1554 215 74 51 chr9 662 1173 -117861454 - L1MD3 LINE L1 0 7995 7473 * 1668 202 18 9 chr9 1169 1496 -117861131 - L1MD3 LINE L1 -958 7037 6708 1853 98 0 0 chr9 1808 2072 -117860555 - AluSc SINE Alu 0 309 46 2226 112 3 16 chr9 3277 3589 -117859038 + AluSx SINE Alu 1 308 -4 217 250 0 0 chr9 3831 3879 -117858748 - MIR SINE MIR -2 260 213 1858 153 109 52 chr9 3881 4156 -117858471 + MSTA LTR MaLR 1 308 -120 1994 130 14 0 chr9 4156 4440 -117858187 + AluSx SINE Alu 1 288 -24 1858 153 109 52 chr9 4440 4569 -117858058 + MSTA LTR MaLR 308 428 0 2275 105 3 0 chr9 4629 4925 -117857702 + AluSg SINE Alu 2 298 -12 233 355 64 41 chr9 4998 5170 -117857457 - L2 LINE L2 -183 3089 2914 323 121 17 0 chr9 5748 5806 -117856821 + (CA)n Simple_repeat Simple_repeat 2 60 0 39 38 0 0 chr9 5806 5859 -117856768 + AT_rich Low_complexity Low_complexity 1 53 0 2217 108 3 0 chr9 5876 6164 -117856463 + AluSq SINE Alu 5 293 -20 226 222 0 0 chr9 6193 6238 -117856389 + (TATG)n Simple_repeat Simple_repeat 4 48 0 405 269 56 0 chr9 6374 6482 -117856145 - L2 LINE L2 -1 3312 3199 2189 124 3 0 chr9 6790 7089 -117855538 + AluSx SINE Alu 6 305 -7 1809 171 47 22 chr9 7486 7848 -117854779 + L1MB2 LINE L1 5801 6171 0 257 315 100 30 chr9 7863 8008 -117854619 + L1MC/D LINE L1 5614 5778 -2030 1098 219 8 60 chr9 8008 8259 -117854368 + MER8 DNA MER2_type 1 238 -1 257 315 100 30 chr9 8259 8313 -117854314 + L1MC/D LINE L1 5778 5827 -1981 2768 213 30 14 chr9 8539 8561 -117854066 + L1MB5 LINE L1 4316 4336 -1810 2257 112 3 0 chr9 8561 8856 -117853771 + AluSp SINE Alu 2 297 -16 2768 213 30 14 chr9 8856 8945 -117853682 + L1MB5 LINE L1 4336 4422 -1724 2259 113 7 3 chr9 8945 9254 -117853373 + AluSx SINE Alu 1 310 -2 2768 213 30 14 chr9 9254 9908 -117852719 + L1MB5 LINE L1 4422 5054 -1092 2267 108 3 13 chr9 9910 10225 -117852402 + AluSx SINE Alu 1 312 0 4024 179 72 11 chr9 10236 11142 -117851485 + L1MB5 LINE L1 5215 6173 -1 2496 131 6 0 chr9 11615 11974 -117850653 + MER46B DNA MER2_type 1 236 0 1971 162 13 0 chr9 12051 12359 -117850268 + AluJo SINE Alu 1 312 0 761 188 0 0 chr9 12623 12740 -117849887 - FLAM_A SINE Alu -16 117 1 30 0 0 0 chr9 13101 13131 -117849496 + AT_rich Low_complexity Low_complexity 1 30 0 310 294 34 62 chr9 15065 15242 -117847385 + L1ME LINE L1 4887 5058 -1088 2618 145 88 47 chr9 15300 15789 -117846838 - LTR22 LTR ERVK 0 509 1 299 317 14 41 chr9 15798 15913 -117846714 - L2 LINE L2 -52 3261 3149 1977 121 31 7 chr9 15913 16202 -117846425 + AluSq SINE Alu 1 296 -17 299 317 14 41 chr9 16202 16231 -117846396 - L2 LINE L2 -164 3149 3121 370 327 96 6 chr9 16260 16531 -117846096 - L2 LINE L2 -309 2963 2653 22 35 0 0 chr9 16600 16629 -117845998 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr9 16672 16714 -117845913 + AT_rich Low_complexity Low_complexity 1 42 0 349 222 178 10 chr9 16721 16977 -117845650 + L1ME LINE L1 5281 5594 -527 280 138 92 62 chr9 17651 17716 -117844911 - MIR3 SINE MIR -17 191 125 485 257 75 70 chr9 18671 18912 -117843715 + MIR SINE MIR 18 259 -3 300 213 516 7 chr9 19137 19292 -117843335 - MIR SINE MIR -8 254 21 894 241 63 69 chr9 19453 19801 -117842826 + L1ME4a LINE L1 5490 5835 -286 535 295 106 10 chr9 19852 19927 -117842700 + MIR SINE MIR 26 92 -170 2284 122 0 0 chr9 19927 20238 -117842389 - AluSx SINE Alu -1 311 1 535 295 106 10 chr9 20238 20369 -117842258 + MIR SINE MIR 92 252 -10 250 288 182 25 chr9 21785 21983 -117840644 + MIR SINE MIR 31 259 -3 269 315 178 36 chr9 22870 23146 -117839481 - L2 LINE L2 -1229 2085 1771 21 0 0 0 chr9 23559 23580 -117839047 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr9 24094 24137 -117838490 + AT_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr9 24323 24351 -117838276 + AT_rich Low_complexity Low_complexity 1 28 0 4611 115 134 31 chr9 26694 28058 -117834569 + pTR5 LTR ERV1 726 2606 0 207 0 0 0 chr9 29711 29734 -117832893 + (CA)n Simple_repeat Simple_repeat 2 24 0 1055 208 33 0 chr9 30257 30440 -117832187 - MER5A DNA MER1_type 0 189 1 4988 66 194 27 chr9 30492 31200 -117831427 + LTR12 LTR ERV1 1 826 0 866 213 38 16 chr9 31833 32016 -117830611 - MER5A DNA MER1_type -1 188 2 2002 153 0 3 chr9 32030 32324 -117830303 - AluSx SINE Alu -19 293 1 1897 154 3 10 chr9 32385 32677 -117829950 - AluJb SINE Alu -22 290 1 183 237 26 92 chr9 32720 32796 -117829831 + MIR SINE MIR 56 126 -136 2237 108 10 3 chr9 33183 33488 -117829139 - AluSx SINE Alu -5 307 1 460 36 0 0 chr9 34552 34608 -117828019 + AluY SINE Alu 3 58 -252 7479 138 40 6 chr9 34714 36021 -117826606 - L1PBa LINE L1 -4274 2589 1093 2550 158 22 9 chr9 36198 36647 -117825980 + L1MB1 LINE L1 5714 6168 0 1250 140 10 24 chr9 36659 36866 -117825761 - Tigger3(Golem) DNA MER2_type -15 3014 2811 331 153 333 0 chr9 36864 36936 -117825691 - Tigger3(Golem) DNA MER2_type -2932 97 2 * 1844 175 0 7 chr9 37251 37542 -117825085 - AluJb SINE Alu -23 289 1 367 297 72 0 chr9 38882 38993 -117823634 + L1ME3 LINE L1 5965 6083 -79 2031 105 28 65 chr9 39050 39373 -117823254 + AluSx SINE Alu 1 311 -1 1006 225 114 76 chr9 39488 39990 -117822637 + MER39 LTR ERV1 1 707 0 187 227 0 23 chr9 40095 40139 -117822488 - MER5A DNA MER1_type -21 168 126 398 250 30 54 chr9 40281 40449 -117822178 + L1MC5 LINE L1 7773 7936 -25 194 270 139 70 chr9 40449 40564 -117822063 - MER5B DNA MER1_type -53 125 3 188 311 115 0 chr9 40569 40630 -117821997 - L2 LINE L2 -1 3271 3204 1623 163 20 24 chr9 43566 43860 -117818767 + AluJo SINE Alu 2 294 -18 1682 195 7 3 chr9 43888 44195 -117818432 + AluJb SINE Alu 1 308 -4 193 222 143 0 chr9 45075 45138 -117817489 + MIR SINE MIR 78 149 -113 188 67 33 0 chr9 45186 45216 -117817411 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1843 168 10 16 chr9 45425 45735 -117816892 + AluJo SINE Alu 1 308 -4 2917 146 17 2 chr9 45879 46346 -117816281 + L1MB1 LINE L1 5695 6168 0 43739 31 21 6 chr9 46457 52521 -117810106 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr9 52539 52564 -117810063 + AT_rich Low_complexity Low_complexity 1 25 0 2259 85 10 19 chr9 53702 54009 -117808618 + AluSc SINE Alu 1 304 -5 1679 126 72 4 chr9 54573 54836 -117807791 + AluSx SINE Alu 5 285 -27 257 27 54 0 chr9 54858 54895 -117807732 + (TAAAAA)n Simple_repeat Simple_repeat 2 40 0 183 80 0 0 chr9 55387 55412 -117807215 + (A)n Simple_repeat Simple_repeat 1 25 0 185 331 145 8 chr9 56019 56143 -117806484 + L2 LINE L2 2718 2858 -456 222 297 55 78 chr9 56209 56337 -117806290 + L2 LINE L2 2948 3072 -200 193 270 206 40 chr9 56424 56550 -117806077 + L2 LINE L2 3122 3268 -4 2620 55 0 0 chr9 56925 57234 -117805393 - AluY SINE Alu -2 309 1 225 0 0 0 chr9 58246 58271 -117804356 + (A)n Simple_repeat Simple_repeat 1 25 0 587 246 181 0 chr9 60203 60418 -117802209 - MIR SINE MIR 0 262 9 21 0 0 0 chr9 61088 61109 -117801518 + AT_rich Low_complexity Low_complexity 1 21 0 801 175 0 0 chr9 62114 62240 -117800387 + FLAM_A SINE Alu 1 126 -7 1751 78 48 117 chr9 62630 62939 -117799688 + AluSx SINE Alu 1 288 -24 38 22 0 0 chr9 62939 62984 -117799643 + AT_rich Low_complexity Low_complexity 1 45 0 290 164 91 0 chr9 64989 65044 -117797583 + L2 LINE L2 3250 3309 -4 27 0 0 0 chr9 65908 65935 -117796692 + AT_rich Low_complexity Low_complexity 1 27 0 1377 113 120 21 chr9 66098 66381 -117796246 + L1MA9 LINE L1 5997 6307 -5 202 151 0 75 chr9 66470 66523 -117796104 + GA-rich Low_complexity Low_complexity 4 52 0 2355 96 3 0 chr9 67995 68296 -117794331 + AluSx SINE Alu 1 302 -10 259 86 0 0 chr9 68607 68642 -117793985 - U2 snRNA snRNA -153 35 1 809 56 47 0 chr9 68715 68822 -117793805 - L1PA10 LINE L1 -3 6165 6054 31 44 0 0 chr9 69507 69552 -117793075 + AT_rich Low_complexity Low_complexity 1 45 0 2203 115 0 28 chr9 70443 70764 -117791863 + AluSx SINE Alu 1 312 0 1233 168 28 5 chr9 72333 72547 -117790080 + MER20 DNA MER1_type 1 219 0 214 158 0 0 chr9 72581 72619 -117790008 + A-rich Low_complexity Low_complexity 5 42 0 742 251 143 72 chr9 73648 74173 -117788454 + HAL1b LINE L1 77 638 -710 * 745 234 104 57 chr9 74172 74488 -117788139 + HAL1b LINE L1 439 769 -579 12781 95 39 8 chr9 74491 75050 -117787577 + Tigger1 DNA MER2_type 388 928 -1490 2052 103 4 4 chr9 75050 75360 -117787267 - AluSg SINE Alu 0 310 1 12781 95 39 8 chr9 75360 76663 -117785964 + Tigger1 DNA MER2_type 928 2309 -109 1028 134 79 12 chr9 76663 76827 -117785800 - FRAM SINE Alu -4 172 1 691 183 0 0 chr9 76831 76946 -117785681 + Tigger1 DNA MER2_type 2304 2418 0 705 167 30 8 chr9 76950 77082 -117785545 - MER5A DNA MER1_type -23 166 32 456 123 0 0 chr9 77144 77217 -117785410 + (TG)n Simple_repeat Simple_repeat 2 74 0 1929 120 4 4 chr9 77219 77494 -117785133 - AluSx SINE Alu -37 275 1 1451 145 9 0 chr9 78346 78574 -117784053 - MER2 DNA MER2_type -115 230 1 299 189 68 14 chr9 79597 79671 -117782956 - L2 LINE L2 -4 3309 3232 2009 82 0 0 chr9 80714 80970 -117781657 + AluY SINE Alu 41 296 -15 2253 107 0 3 chr9 81906 82214 -117780413 + AluSc SINE Alu 2 308 -1 26 64 0 0 chr9 82594 82641 -117779986 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 82780 82801 -117779826 + AT_rich Low_complexity Low_complexity 1 21 0 328 183 112 52 chr9 83162 83332 -117779295 - L1ME LINE L1 -356 5806 5638 233 288 137 0 chr9 83695 83768 -117778859 - L2 LINE L2 -32 3281 3199 390 306 133 43 chr9 83988 84243 -117778384 - L2 LINE L2 -475 2839 2562 212 325 12 12 chr9 85278 85358 -117777269 - MIR SINE MIR -58 150 71 926 272 99 10 chr9 86777 87210 -117775417 - L1ME3A LINE L1 -337 5833 5357 190 106 21 106 chr9 87242 87289 -117775338 - MIR SINE MIR -136 126 84 1258 171 0 18 chr9 87938 88155 -117774472 - AluJo SINE Alu -18 294 82 2104 158 53 44 chr9 88270 88725 -117773902 + L1MB8 LINE L1 5715 6173 -5 2227 117 3 0 chr9 88984 89291 -117773336 - AluSg SINE Alu -2 308 1 743 274 58 14 chr9 89516 89724 -117772903 - MIR SINE MIR -31 231 15 585 189 25 16 chr9 89727 89849 -117772778 - MER58 DNA MER1_type -4 2416 2294 830 196 111 69 chr9 89870 90137 -117772490 + LTR54B LTR ERV1 1 288 -210 1891 143 4 0 chr9 90137 90403 -117772224 + AluSx SINE Alu 1 267 -45 830 196 111 69 chr9 90403 90497 -117772130 + LTR54B LTR ERV1 288 377 -121 433 172 0 133 chr9 90497 90625 -117772002 + MER57A-int LTR ERV1 7425 7535 -2 1000 153 55 92 chr9 90626 90937 -117771690 + MER57A LTR ERV1 1 403 0 378 213 71 50 chr9 90937 91041 -117771586 - MER58 DNA MER1_type -2276 144 38 24 0 0 0 chr9 91722 91746 -117770881 + AT_rich Low_complexity Low_complexity 1 24 0 820 206 28 22 chr9 92613 92793 -117769834 - MLT1A1 LTR MaLR 0 365 185 1700 188 0 0 chr9 92932 93214 -117769413 + AluJo SINE Alu 1 282 -30 287 161 0 16 chr9 93222 93284 -117769343 + (TA)n Simple_repeat Simple_repeat 1 61 0 317 271 48 91 chr9 93631 93750 -117768877 - L1MC4a LINE L1 -1873 5935 5827 2256 119 0 0 chr9 93750 94053 -117768574 - AluSq SINE Alu -10 303 1 317 271 48 91 chr9 94053 94143 -117768484 - L1MC4a LINE L1 -1981 5827 5735 22 35 0 0 chr9 94332 94361 -117768266 + AT_rich Low_complexity Low_complexity 1 29 0 2020 153 3 3 chr9 94646 94954 -117767673 + AluSx SINE Alu 1 308 -4 2006 108 142 16 chr9 95270 95593 -117767034 - THE1B LTR MaLR 0 364 1 11143 90 25 15 chr9 95593 97157 -117765470 - THE1B-int LTR MaLR 0 1580 1 2199 114 76 15 chr9 97157 97500 -117765127 - THE1B LTR MaLR 0 364 1 253 253 0 36 chr9 97733 97816 -117764811 + (TATATG)n Simple_repeat Simple_repeat 1 80 0 26 0 0 0 chr9 97960 97986 -117764641 + AT_rich Low_complexity Low_complexity 1 26 0 371 253 110 38 chr9 97986 98223 -117764404 + L1ME LINE L1 5546 5799 -322 2515 197 80 11 chr9 99197 99831 -117762796 - L1MC4a LINE L1 -5 7803 7126 595 302 45 5 chr9 99830 100044 -117762583 - L1ME1 LINE L1 0 6184 5947 * 186 121 35 35 chr9 100425 100483 -117762144 + T-rich Low_complexity Low_complexity 4 61 0 432 252 67 118 chr9 100632 100870 -117761757 + MER102a DNA MER1_type 96 321 -9 235 170 19 0 chr9 100872 100925 -117761702 + (TA)n Simple_repeat Simple_repeat 1 54 0 1637 243 62 51 chr9 101222 101830 -117760797 - HAL1 LINE L1 -296 2211 1597 317 270 26 12 chr9 101837 101940 -117760687 - MLT1I LTR MaLR -5 445 324 2301 106 0 0 chr9 102233 102536 -117760091 - AluSg SINE Alu -7 303 1 1015 91 8 0 chr9 102536 102668 -117759959 - AluSg SINE Alu -177 133 1 3482 262 68 63 chr9 102668 102828 -117759799 - HAL1 LINE L1 -935 1572 1414 2151 165 12 54 chr9 102828 103233 -117759394 + MLT1B LTR MaLR 3 390 0 3482 262 68 63 chr9 103233 103719 -117758908 - HAL1 LINE L1 -1093 1414 932 4926 106 26 16 chr9 103719 103772 -117758855 - L1MA3 LINE L1 -1 6304 6253 2405 74 7 0 chr9 103772 104070 -117758557 - AluSp SINE Alu -12 301 2 4926 106 26 16 chr9 104070 104759 -117757868 - L1MA3 LINE L1 -52 6253 5555 3482 262 68 63 chr9 104759 105674 -117756953 - HAL1 LINE L1 -1575 932 1 610 254 17 86 chr9 106036 106128 -117756499 - MIR SINE MIR -12 250 153 2299 84 0 0 chr9 106128 106432 -117756195 + AluSx SINE Alu 1 304 0 610 254 17 86 chr9 106432 106570 -117756057 - MIR SINE MIR -109 153 35 2964 6 0 0 chr9 106940 107257 -117755370 + AluYb8 SINE Alu 1 317 -1 548 259 41 14 chr9 107257 107404 -117755223 + L2 LINE L2 3122 3272 0 2387 187 24 2 chr9 107433 107850 -117754777 + MSTB LTR MaLR 1 426 0 2389 68 122 12 chr9 107858 108194 -117754433 - THE1C LTR MaLR -2 373 1 1097 230 149 9 chr9 109003 109325 -117753302 + L1ME3A LINE L1 5781 6147 -23 1775 151 3 40 chr9 110570 110894 -117751733 - AluJb SINE Alu 0 312 1 270 311 150 36 chr9 111260 111427 -117751200 + MER5A DNA MER1_type 4 189 0 2710 39 0 3 chr9 112041 112353 -117750274 + AluY SINE Alu 1 311 0 25 0 0 0 chr9 112644 112669 -117749958 + AT_rich Low_complexity Low_complexity 1 25 0 421 170 0 85 chr9 112732 112826 -117749801 - L1MC4 LINE L1 -159 7883 7798 2508 189 9 5 chr9 112838 113271 -117749356 - MER41D LTR ERV1 -7 550 116 24 32 0 0 chr9 113370 113401 -117749226 + AT_rich Low_complexity Low_complexity 1 31 0 711 274 112 70 chr9 113465 113939 -117748688 + MLT1L LTR MaLR 122 615 0 648 281 87 5 chr9 113979 114175 -117748452 - MIR SINE MIR -49 213 2 712 292 72 8 chr9 114379 114615 -117748012 + MIR SINE MIR 2 252 -10 622 301 104 20 chr9 114623 114922 -117747705 - MLT1K LTR MaLR -150 438 115 266 288 104 40 chr9 116471 116596 -117746031 + L2 LINE L2 3180 3312 -1 25 31 0 0 chr9 116758 116790 -117745837 + AT_rich Low_complexity Low_complexity 1 32 0 2403 80 3 0 chr9 116823 117124 -117745503 - AluSp SINE Alu -11 302 1 896 223 129 41 chr9 117485 117803 -117744824 - L2 LINE L2 0 3313 2968 259 315 83 19 chr9 118535 118643 -117743984 - MIR SINE MIR -64 144 30 517 244 93 52 chr9 118843 119015 -117743612 + MIR SINE MIR 63 241 -21 1286 181 49 61 chr9 120184 120510 -117742117 - MER33 DNA MER1_type -2 322 1 2345 51 10 3 chr9 120540 120834 -117741793 - AluSc SINE Alu -13 296 1 1714 153 32 23 chr9 123056 123364 -117739263 + AluJo SINE Alu 1 311 -1 587 283 34 34 chr9 123669 123874 -117738753 + MIR SINE MIR 2 206 -56 542 207 18 0 chr9 123874 123985 -117738642 + Charlie5 DNA MER1_type 2364 2476 -136 479 257 102 58 chr9 124503 124729 -117737898 - MIR SINE MIR -9 253 18 925 261 56 8 chr9 125625 125874 -117736753 - MIR SINE MIR 0 262 2 259 289 48 0 chr9 125897 125980 -117736647 - MIR SINE MIR 0 262 176 2187 126 3 3 chr9 125996 126306 -117736321 + AluSx SINE Alu 1 310 -2 1989 157 0 0 chr9 126423 126722 -117735905 + AluJo SINE Alu 1 299 -13 1784 79 9 0 chr9 127519 127748 -117734879 - AluSg/x SINE Alu 0 312 82 1520 100 27 9 chr9 128118 128338 -117734289 - MER2 DNA MER2_type 0 345 122 2220 97 0 39 chr9 128338 128646 -117733981 + AluSx SINE Alu 1 296 -16 610 286 43 78 chr9 128687 128780 -117733847 - L1ME LINE L1 -298 5823 5728 1768 158 0 29 chr9 128780 129090 -117733537 + AluJo SINE Alu 1 301 -11 610 286 43 78 chr9 129090 129370 -117733257 - L1ME LINE L1 -393 5728 5463 205 355 56 19 chr9 130115 130222 -117732405 - L2 LINE L2 0 3272 3162 264 278 70 35 chr9 130293 130408 -117732219 - MARNA DNA Mariner -91 495 377 384 321 62 33 chr9 130793 131033 -117731594 - MARNA DNA Mariner -321 265 19 1253 280 159 25 chr9 132373 132854 -117729773 - L2 LINE L2 0 3313 2898 2616 100 43 6 chr9 132854 133205 -117729422 - THE1B LTR MaLR 0 364 1 1253 280 159 25 chr9 133205 133666 -117728961 - L2 LINE L2 -415 2898 2228 24 0 0 0 chr9 133760 133784 -117728843 + AT_rich Low_complexity Low_complexity 1 24 0 349 208 38 28 chr9 133802 133908 -117728719 + L1ME4a LINE L1 5942 6048 -73 652 286 156 4 chr9 134208 134439 -117728188 + MLT1I LTR MaLR 137 402 -7 392 313 43 24 chr9 134763 134974 -117727653 - L2 LINE L2 -1369 1945 1731 28 0 0 0 chr9 135253 135281 -117727346 + AT_rich Low_complexity Low_complexity 1 28 0 663 226 14 20 chr9 135375 135521 -117727106 + MLT1C LTR MaLR 321 465 -2 * 1384 228 49 62 chr9 135521 136003 -117726624 - MLT1H LTR MaLR -28 521 1 196 358 74 12 chr9 136187 136268 -117726359 + L3b LINE CR1 1478 1563 -20 321 211 22 56 chr9 136592 136682 -117725945 - MLT1J LTR MaLR 0 511 425 26 0 0 0 chr9 136686 136712 -117725915 + AT_rich Low_complexity Low_complexity 1 26 0 45335 36 2 1 chr9 136712 142859 -117719768 - L1PA4 LINE L1 0 6155 2 663 320 50 60 chr9 142862 143299 -117719328 - MLT1J LTR MaLR -74 437 5 931 275 71 75 chr9 143454 143905 -117718722 - MLT1J2 LTR MaLR -1 449 1 2148 141 0 0 chr9 144181 144487 -117718140 + AluJb SINE Alu 1 306 -6 3564 152 37 19 chr9 145377 145969 -117716658 - MER6A DNA MER2_type -2 603 1 233 236 0 18 chr9 146001 146056 -117716571 + (CA)n Simple_repeat Simple_repeat 2 55 0 704 275 101 9 chr9 146550 146877 -117715750 - L1ME4a LINE L1 -150 5971 5615 553 210 114 54 chr9 147482 147649 -117714978 - L2 LINE L2 0 3313 3137 244 257 100 0 chr9 147647 147717 -117714910 + MIR SINE MIR 116 192 -70 * 4574 122 18 1 chr9 147902 148580 -117714047 - L1MA5A LINE L1 -3 6294 5606 372 219 0 0 chr9 148657 148721 -117713906 - FLAM_A SINE Alu -69 64 1 297 274 88 39 chr9 148893 148995 -117713632 + MIR3 SINE MIR 82 188 -20 30 0 0 0 chr9 149283 149313 -117713314 + AT_rich Low_complexity Low_complexity 1 30 0 314 306 209 29 chr9 149317 149523 -117713104 - MIR SINE MIR -12 250 8 2569 42 0 13 chr9 150712 151018 -117711609 + AluY SINE Alu 2 303 -8 340 236 165 16 chr9 151021 151085 -117711542 + MER112 DNA MER1_type 4 57 -203 213 39 0 0 chr9 151085 151111 -117711516 + (CA)n Simple_repeat Simple_repeat 1 26 0 340 236 165 16 chr9 151111 151228 -117711399 + MER112 DNA MER1_type 57 212 -48 323 296 80 65 chr9 151277 151476 -117711151 + L2 LINE L2 3112 3313 0 2076 119 0 10 chr9 151995 152316 -117710311 - AluSx SINE Alu 0 312 1 1825 161 10 3 chr9 152746 153038 -117709589 + AluSx SINE Alu 1 294 -18 1511 154 60 39 chr9 153047 153332 -117709295 + AluJo SINE Alu 1 291 -21 746 191 0 0 chr9 153583 153721 -117708906 - FLAM_A SINE Alu 0 140 3 2235 60 0 14 chr9 154339 154620 -117708007 - AluY SINE Alu -9 302 26 725 189 0 9 chr9 155219 155449 -117707178 + CT-rich Low_complexity Low_complexity 1 227 0 2082 105 0 52 chr9 156411 156736 -117705891 - AluSx SINE Alu -4 308 1 187 315 39 85 chr9 157441 157746 -117704881 - L2 LINE L2 -1218 2096 1806 551 191 29 0 chr9 158460 158565 -117704062 + MIR SINE MIR 89 196 -66 2269 112 0 3 chr9 158776 159081 -117703546 - AluSg SINE Alu -6 304 1 275 276 17 0 chr9 159160 159227 -117703400 - MIR SINE MIR -89 119 51 2248 83 21 3 chr9 159329 159619 -117703008 + AluSx SINE Alu 1 295 -17 409 272 61 50 chr9 161634 161814 -117700813 + MER5A DNA MER1_type 8 189 0 2456 88 0 0 chr9 162194 162502 -117700125 + AluSx SINE Alu 1 308 -4 285 245 158 50 chr9 163155 163294 -117699333 + MIR SINE MIR 36 189 -73 399 246 146 9 chr9 163593 163703 -117698924 + L2 LINE L2 3189 3313 0 967 115 23 152 chr9 164252 164320 -117698307 - MER5A DNA MER1_type 0 189 114 2351 88 3 0 chr9 164320 164625 -117698002 - AluSc SINE Alu -3 306 1 967 115 23 152 chr9 164625 164773 -117697854 - MER5A DNA MER1_type -75 114 1 2417 95 0 0 chr9 165401 165706 -117696921 - AluSx SINE Alu -7 305 1 1735 164 24 7 chr9 165833 166125 -117696502 + AluJo SINE Alu 1 297 -15 420 272 239 9 chr9 166260 166473 -117696154 + MIR SINE MIR 1 262 0 421 271 51 0 chr9 166929 167047 -117695580 + L2 LINE L2 2234 2357 -957 681 238 157 20 chr9 167302 167606 -117695021 + L1MC4a LINE L1 5531 5829 -341 460 213 28 0 chr9 167605 167713 -117694914 + L1ME2 LINE L1 5751 5861 -303 * 811 61 0 0 chr9 167816 167915 -117694712 + AluY SINE Alu 204 302 -9 22 0 0 0 chr9 168118 168140 -117694487 + AT_rich Low_complexity Low_complexity 1 22 0 1410 251 80 20 chr9 168207 168793 -117693834 - L1MEc LINE L1 -3288 2927 2307 386 0 0 39 chr9 168794 168845 -117693782 + (GAAA)n Simple_repeat Simple_repeat 2 50 0 370 157 0 0 chr9 168848 168918 -117693709 + L1PA15 LINE L1 6096 6165 0 2161 206 140 27 chr9 168931 169517 -117693110 + L1ME1 LINE L1 5379 6030 -136 487 196 47 0 chr9 169517 169624 -117693003 + L1MA10 LINE L1 6216 6327 -7 287 290 103 30 chr9 169631 169733 -117692894 - L1MEc LINE L1 -4039 2357 2264 2214 113 0 0 chr9 169733 170033 -117692594 + AluSx SINE Alu 1 300 -12 287 290 103 30 chr9 170033 170863 -117691764 - L1MEc LINE L1 -4132 2264 1248 275 287 0 0 chr9 171407 171494 -117691133 + (TA)n Simple_repeat Simple_repeat 2 88 0 2393 88 0 0 chr9 171735 172040 -117690587 - AluSq SINE Alu -8 305 1 344 364 8 8 chr9 172620 172752 -117689875 - MIR3 SINE MIR -19 189 58 279 0 0 0 chr9 173173 173204 -117689423 + (TGAA)n Simple_repeat Simple_repeat 2 32 0 466 290 45 28 chr9 173233 173409 -117689218 - MER5A DNA MER1_type 0 189 11 2199 130 0 3 chr9 174007 174314 -117688313 - AluJb SINE Alu -6 306 1 408 312 58 56 chr9 174482 174982 -117687645 - L1ME4a LINE L1 -238 5883 5385 4037 169 28 27 chr9 175870 176361 -117686266 - L1MB8 LINE L1 -14 6164 5670 2260 115 0 7 chr9 176361 176666 -117685961 - AluSx SINE Alu -9 303 1 4037 169 28 27 chr9 176666 176924 -117685703 - L1MB8 LINE L1 -508 5670 5414 269 259 0 12 chr9 178922 178946 -117683681 - L1MA10 LINE L1 0 6334 6311 673 264 48 39 chr9 178946 179177 -117683450 - L1ME1 LINE L1 -14 6152 5920 1958 126 10 14 chr9 179199 179492 -117683135 - AluJo SINE Alu -20 292 1 29 47 0 0 chr9 180222 180265 -117682362 + AT_rich Low_complexity Low_complexity 1 43 0 2145 102 3 58 chr9 180489 180814 -117681813 - AluSp SINE Alu -6 307 1 264 122 0 0 chr9 181271 181312 -117681315 + (T)n Simple_repeat Simple_repeat 1 41 0 424 300 40 27 chr9 181819 181969 -117680658 + MIR SINE MIR 20 171 -91 523 197 311 0 chr9 182237 182369 -117680258 + MER5B DNA MER1_type 5 177 -1 25 0 0 0 chr9 182381 182406 -117680221 + AT_rich Low_complexity Low_complexity 1 25 0 2259 97 0 0 chr9 182409 182697 -117679930 - AluSx SINE Alu -24 288 1 2123 127 0 0 chr9 182700 182999 -117679628 - AluSx SINE Alu -13 299 1 1924 138 7 7 chr9 183611 183917 -117678710 - AluJb SINE Alu 0 306 1 1799 153 0 32 chr9 183941 184249 -117678378 + AluJo SINE Alu 1 298 -14 349 20 40 0 chr9 184249 184299 -117678328 + (GAGAA)n Simple_repeat Simple_repeat 1 52 0 183 204 0 0 chr9 184349 184393 -117678234 + GA-rich Low_complexity Low_complexity 3 46 0 2233 283 114 20 chr9 185188 186276 -117676351 - L2 LINE L2 0 3313 2120 301 260 68 0 chr9 186315 186388 -117676239 + MER81 DNA DNA 1 78 -36 438 193 175 0 chr9 186412 186526 -117676101 - L2 LINE L2 -1297 2017 1884 270 179 36 0 chr9 186706 186762 -117675865 + MIR SINE MIR 84 141 -121 181 143 163 20 chr9 187133 187182 -117675445 + L2 LINE L2 3216 3271 -1 409 242 80 106 chr9 187189 187528 -117675099 - MLT2C1 LTR ERVL -1 396 67 * 664 179 23 37 chr9 187383 187566 -117675061 - MLT1E1 LTR MaLR -376 278 46 * 717 207 14 7 chr9 187565 187710 -117674917 - MLT2F LTR ERVL -517 146 1 2029 128 21 0 chr9 187780 188069 -117674558 + AluSx SINE Alu 1 295 -17 270 143 0 0 chr9 188426 188475 -117674152 + (TG)n Simple_repeat Simple_repeat 2 50 0 191 254 110 85 chr9 188973 189091 -117673536 + L2 LINE L2 3187 3307 -6 1476 181 26 32 chr9 189217 189526 -117673101 - AluJo SINE Alu 0 312 6 476 244 122 0 chr9 189932 190055 -117672572 + MIR SINE MIR 11 148 -114 1868 155 0 24 chr9 190055 190209 -117672418 + MER46B DNA MER2_type 1 19 -2712 2216 157 23 0 chr9 190209 190560 -117672067 - L1PB4 LINE L1 0 6156 5798 1868 155 0 24 chr9 190560 190734 -117671893 + MER46B DNA MER2_type 19 196 -40 307 235 133 10 chr9 190752 190850 -117671777 + MIR SINE MIR 148 257 -5 4138 83 13 0 chr9 191382 191913 -117670714 + L1PA14 LINE L1 5624 6161 0 336 228 238 0 chr9 193705 193806 -117668821 + MIR SINE MIR 16 140 -122 233 200 0 0 chr9 193905 193945 -117668682 - MIR SINE MIR -6 256 217 796 191 0 22 chr9 194701 194837 -117667790 + FLAM_A SINE Alu 1 133 0 773 308 76 0 chr9 195129 195366 -117667261 + MIR SINE MIR 6 260 -2 733 276 43 30 chr9 195377 195609 -117667018 - MIR SINE MIR -22 240 6 23 0 0 0 chr9 196416 196439 -117666188 + AT_rich Low_complexity Low_complexity 1 23 0 2072 143 56 30 chr9 196444 196941 -117665686 - L1MC2 LINE L1 0 6344 5752 1482 123 45 18 chr9 196978 197198 -117665429 - MER30 DNA MER1_type 0 230 5 580 278 88 10 chr9 198265 198571 -117664056 - L1ME4a LINE L1 -202 5919 5590 1887 155 3 26 chr9 198590 198899 -117663728 + AluJo SINE Alu 2 303 -9 2374 71 6 52 chr9 198899 199222 -117663405 + AluSp SINE Alu 1 309 -4 346 274 110 51 chr9 199338 199630 -117662997 - L1ME4a LINE L1 -748 5398 5090 183 42 0 0 chr9 200252 200276 -117662351 + (GGAGAA)n Simple_repeat Simple_repeat 3 26 0 398 315 144 27 chr9 200956 201254 -117661373 - L1ME LINE L1 -311 5810 5478 1767 193 34 70 chr9 201379 201686 -117660941 + L1ME1 LINE L1 5594 5880 -286 2418 102 0 0 chr9 201686 201990 -117660637 + AluSx SINE Alu 1 304 -8 1767 193 34 70 chr9 201990 202154 -117660473 + L1ME1 LINE L1 5880 6048 -118 230 243 71 0 chr9 203905 203975 -117658652 + GA-rich Low_complexity Low_complexity 2 76 0 470 322 38 17 chr9 203982 204178 -117658449 - MIR SINE MIR -59 203 3 2174 132 0 0 chr9 204951 205261 -117657366 + AluSx SINE Alu 1 310 -2 244 237 103 52 chr9 205300 205397 -117657230 - MIR3 SINE MIR -10 198 97 324 0 0 0 chr9 205427 205463 -117657164 + (TG)n Simple_repeat Simple_repeat 2 37 0 1370 142 0 5 chr9 206167 206371 -117656256 - AluJb SINE Alu -109 203 1 2413 64 7 3 chr9 206548 206844 -117655783 + AluY SINE Alu 1 297 -14 10681 213 63 13 chr9 207245 209655 -117652972 + L1PA16 LINE L1 3078 5566 -600 1746 152 6 108 chr9 209655 209990 -117652637 + AluJo SINE Alu 1 301 -1 10681 213 63 13 chr9 209990 210624 -117652003 + L1PA16 LINE L1 5566 6166 0 734 303 49 12 chr9 211825 212069 -117650558 + MIR SINE MIR 10 262 0 2494 62 0 10 chr9 212085 212393 -117650234 - AluY SINE Alu -6 305 1 725 188 17 15 chr9 212597 212870 -117649757 + L1MB3 LINE L1 5657 6123 -60 199 267 67 0 chr9 212875 212935 -117649692 - MIR SINE MIR -118 144 81 389 229 59 20 chr9 213264 213417 -117649210 - LTR33A LTR ERVL -25 498 340 843 190 49 33 chr9 213424 213608 -117649019 - MER5A DNA MER1_type 0 189 3 773 236 170 66 chr9 213614 214058 -117648569 - LTR50 LTR ERVL -210 585 17 2541 77 6 0 chr9 214155 214466 -117648161 - AluSp SINE Alu 0 313 1 4660 115 27 3 chr9 214487 215156 -117647471 + L1MA5 LINE L1 5609 6293 -7 529 307 63 31 chr9 215361 215470 -117647157 - L1ME4a LINE L1 -179 5942 5838 2225 98 0 7 chr9 215470 215765 -117646862 - AluSc SINE Alu -16 293 1 529 307 63 31 chr9 215765 216004 -117646623 - L1ME4a LINE L1 -283 5838 5583 264 150 0 0 chr9 216741 216781 -117645846 - Alu SINE Alu -19 283 244 2258 105 3 0 chr9 216794 217089 -117645538 + AluSq SINE Alu 1 296 -17 2199 86 0 7 chr9 217278 217556 -117645071 - AluSq SINE Alu -24 289 14 589 218 58 13 chr9 217625 217781 -117644846 + MLT1E LTR MaLR 1 163 -430 1952 135 7 3 chr9 217812 218108 -117644519 + AluSx SINE Alu 1 297 -15 1222 186 4 52 chr9 218112 218360 -117644267 - AluJo SINE Alu -76 236 1 1699 158 63 26 chr9 220315 220664 -117641963 + L1MA7 LINE L1 5880 6241 -50 525 141 10 10 chr9 220659 220758 -117641869 + L1MA7 LINE L1 6192 6290 -1 * 266 160 64 85 chr9 221865 221959 -117640668 - MLT1K LTR MaLR -16 572 481 1407 205 45 40 chr9 222166 222600 -117640027 + L1MC5 LINE L1 7499 7917 -44 791 274 45 0 chr9 224233 224434 -117638193 - MER63A DNA MER1_type 0 210 1 398 304 142 28 chr9 224489 224736 -117637891 - Charlie8 DNA MER1_type -2141 276 2 314 227 23 34 chr9 224867 224955 -117637672 - Charlie7 DNA MER1_type -2500 112 26 183 333 32 11 chr9 225206 225299 -117637328 + MIR3 SINE MIR 108 202 -6 1691 156 53 11 chr9 225823 226105 -117636522 + AluJo SINE Alu 1 294 -18 324 285 27 97 chr9 226717 226903 -117635724 - MER5A DNA MER1_type -11 178 6 460 344 81 9 chr9 229234 229455 -117633172 + MIR SINE MIR 20 256 -6 2128 136 0 0 chr9 229619 229921 -117632706 + AluSq SINE Alu 1 302 -11 2984 114 21 44 chr9 229993 230027 -117632600 - L1MB3 LINE L1 -11 6172 6139 2380 93 3 0 chr9 230027 230329 -117632298 - AluSg SINE Alu -7 303 1 2984 114 21 44 chr9 230329 230776 -117631851 - L1MB3 LINE L1 -44 6139 5702 327 328 39 56 chr9 230779 230959 -117631668 - MIR SINE MIR -39 223 47 2916 105 36 27 chr9 231637 232075 -117630552 - L1PB3 LINE L1 0 6154 5713 682 260 136 41 chr9 233174 233225 -117629402 - MLT1J1 LTR MaLR -10 440 395 1345 128 11 0 chr9 233225 233412 -117629215 - MER5A DNA MER1_type 0 189 1 682 260 136 41 chr9 233412 233734 -117628893 - MLT1J1 LTR MaLR -55 395 64 1885 155 3 13 chr9 234201 234505 -117628122 - AluJb SINE Alu -11 301 1 472 297 34 7 chr9 235162 235310 -117627317 + MIR SINE MIR 29 180 -82 2270 109 3 6 chr9 235747 236060 -117626567 - AluSq SINE Alu -1 312 1 205 233 233 58 chr9 237283 237455 -117625172 + MIR SINE MIR 49 250 -12 221 240 180 80 chr9 237940 238040 -117624587 + L2 LINE L2 3153 3262 -10 535 239 127 29 chr9 238860 239174 -117623453 - L1ME4a LINE L1 -6 6115 5771 1778 184 3 3 chr9 239457 239766 -117622861 - AluJo SINE Alu -3 309 1 2413 81 0 0 chr9 240128 240424 -117622203 + AluY SINE Alu 1 296 -15 2208 109 3 3 chr9 241612 241914 -117620713 + AluSx SINE Alu 5 306 -6 474 283 17 52 chr9 243617 243640 -117618987 + MIR SINE MIR 93 115 -147 2623 144 60 0 chr9 243640 244042 -117618585 - MSTC LTR MaLR -2 426 1 474 283 17 52 chr9 244042 244191 -117618436 + MIR SINE MIR 115 259 -3 1162 172 8 64 chr9 244481 244682 -117617945 + L1MB2 LINE L1 5933 6119 -52 2327 94 7 0 chr9 244682 244980 -117617647 + AluSx SINE Alu 1 300 -12 1162 172 8 64 chr9 244980 245028 -117617599 + L1MB2 LINE L1 6119 6168 -3 182 270 160 50 chr9 245092 245192 -117617435 + L3 LINE CR1 1098 1208 -369 232 242 129 73 chr9 245212 245336 -117617291 + MIR SINE MIR 73 203 -59 348 351 179 0 chr9 245448 245616 -117617011 + L3 LINE CR1 1272 1469 -108 2302 94 0 3 chr9 246325 246622 -117616005 - AluSc SINE Alu -13 296 1 206 304 0 14 chr9 246685 246754 -117615873 - MIR3 SINE MIR -6 202 135 1998 148 3 0 chr9 247148 247452 -117615175 + AluSx SINE Alu 1 305 -7 735 229 71 0 chr9 247863 248046 -117614581 + MER3 DNA MER1_type 9 204 -5 3879 108 19 23 chr9 248514 249043 -117613584 + MER1A DNA MER1_type 1 527 0 234 105 0 0 chr9 249089 249127 -117613500 + (T)n Simple_repeat Simple_repeat 1 38 0 2318 106 0 0 chr9 249270 249572 -117613055 - AluSg SINE Alu -4 306 5 449 304 130 20 chr9 249578 249877 -117612750 - L1ME3 LINE L1 -337 5825 5494 258 225 8 150 chr9 249904 250024 -117612603 - MIR3 SINE MIR -28 180 78 1285 199 68 14 chr9 250026 250307 -117612320 + AluJo SINE Alu 1 296 -16 2081 111 3 24 chr9 251574 251871 -117610756 + AluSq SINE Alu 1 291 -22 234 0 0 0 chr9 252578 252605 -117610022 - MADE1 DNA Mariner 0 80 54 1917 141 7 7 chr9 254032 254331 -117608296 + AluJb SINE Alu 3 301 -11 1523 193 4 7 chr9 256917 257192 -117605435 - AluJo SINE Alu -10 302 29 2244 90 7 3 chr9 259270 259558 -117603069 + AluSg SINE Alu 1 289 -21 248 258 32 0 chr9 259805 259867 -117602760 - L2 LINE L2 0 3272 3209 1962 112 0 0 chr9 260858 261118 -117601509 + AluSq SINE Alu 1 260 -53 1260 215 72 99 chr9 261274 261828 -117600799 - MLT1F1 LTR MaLR 0 567 29 2321 104 3 3 chr9 262001 262310 -117600317 - AluSc SINE Alu 0 309 1 2507 69 0 7 chr9 263055 263361 -117599266 + AluY SINE Alu 1 304 -7 234 91 0 0 chr9 264260 264293 -117598334 + (TC)n Simple_repeat Simple_repeat 2 34 0 1820 128 21 52 chr9 264879 265198 -117597429 - AluJo SINE Alu 0 314 5 2303 122 0 0 chr9 265375 265687 -117596940 + AluSx SINE Alu 1 312 0 276 242 333 0 chr9 265790 265910 -117596717 - MER5A DNA MER1_type 0 189 30 410 276 35 8 chr9 266071 266226 -117596401 + MIR SINE MIR 8 169 -62 189 0 0 0 chr9 266612 266633 -117595994 + (A)n Simple_repeat Simple_repeat 1 21 0 2315 112 0 10 chr9 266842 267154 -117595473 + AluSx SINE Alu 1 309 -3 1551 188 3 30 chr9 267686 267984 -117594643 + AluJo SINE Alu 1 290 -22 339 255 0 21 chr9 270431 270525 -117592102 + MIR3 SINE MIR 95 186 -22 412 239 99 59 chr9 270922 271144 -117591483 + L1ME4a LINE L1 5685 5915 -206 1903 168 0 13 chr9 271159 271468 -117591159 + AluJb SINE Alu 1 305 -7 305 329 264 3 chr9 271718 272099 -117590528 - L2 LINE L2 -223 3049 2575 315 268 12 0 chr9 272474 272556 -117590071 - MIR SINE MIR -149 113 31 849 242 19 53 chr9 273753 274017 -117588610 + MIR SINE MIR 8 262 0 530 183 23 53 chr9 274065 274196 -117588431 - L2 LINE L2 0 3313 3187 30 45 0 0 chr9 275447 275491 -117587136 + AT_rich Low_complexity Low_complexity 1 44 0 2167 96 55 0 chr9 275616 275907 -117586720 - AluSq SINE Alu 0 313 7 445 279 85 42 chr9 276093 276258 -117586369 + MER91A DNA MER1_type 1 172 -24 1943 148 7 3 chr9 276613 276910 -117585717 - AluJb SINE Alu -14 298 1 664 154 36 0 chr9 279599 279709 -117582918 + AluSq SINE Alu 41 154 -159 2156 79 0 8 chr9 279710 280001 -117582626 + AluSx SINE Alu 21 309 0 878 203 89 54 chr9 280092 280408 -117582219 - L1MC5 LINE L1 -182 7779 7453 380 278 71 35 chr9 280764 280933 -117581694 + MIR SINE MIR 34 208 -54 1296 164 80 42 chr9 281032 281261 -117581366 + MER33 DNA MER1_type 1 247 -2338 1996 154 0 13 chr9 281261 281573 -117581054 - AluJo SINE Alu -4 308 1 1296 164 80 42 chr9 281573 281654 -117580973 + MER33 DNA MER1_type 247 323 -1 596 312 63 28 chr9 281671 281988 -117580639 - MER102b DNA MER1_type -8 333 6 244 261 22 80 chr9 282381 282519 -117580108 - MIR3 SINE MIR -3 205 76 2055 137 3 0 chr9 282522 282807 -117579820 + AluJb SINE Alu 1 286 -26 720 183 92 0 chr9 284444 284586 -117578041 - L1MB7 LINE L1 -44 6140 5986 343 285 51 0 chr9 285762 285899 -117576728 - L2 LINE L2 -212 3060 2917 240 192 51 51 chr9 286198 286276 -117576351 - MER5A DNA MER1_type -98 91 14 406 249 92 43 chr9 286814 287197 -117575430 + AluSx SINE Alu 2 197 -105 427 256 110 42 chr9 287197 287628 -117574999 + AluSx SINE Alu 2 204 -98 1795 164 0 11 chr9 287628 287908 -117574719 + AluJo SINE Alu 6 282 -30 225 0 0 0 chr9 287911 287936 -117574691 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2044 143 0 13 chr9 288481 288781 -117573846 + AluJb SINE Alu 1 296 -16 597 254 54 22 chr9 288934 289119 -117573508 + Charlie8 DNA MER1_type 75 265 -2152 2365 93 3 19 chr9 289925 290060 -117572567 + AluSq SINE Alu 1 137 -176 2242 108 10 0 chr9 290060 290356 -117572271 + AluSq SINE Alu 1 299 -14 2365 93 3 19 chr9 290356 290533 -117572094 + AluSq SINE Alu 137 308 -5 1677 185 83 0 chr9 290635 290998 -117571629 - L1MC3 LINE L1 0 7785 7393 318 169 0 101 chr9 291005 291094 -117571533 - L1MB7 LINE L1 -19 6165 6086 229 330 10 0 chr9 291272 291372 -117571255 + MIR SINE MIR 35 135 -73 2513 68 0 0 chr9 291442 291750 -117570877 + AluY SINE Alu 1 308 -3 226 241 0 0 chr9 291793 291847 -117570780 + MER116 DNA Mariner 2 55 -25 785 173 20 0 chr9 291852 292002 -117570625 - MER63B DNA MER1_type 0 434 282 1042 188 73 0 chr9 292002 292220 -117570407 + L1MD3 LINE L1 7730 7963 -32 956 235 91 30 chr9 292222 292520 -117570107 - MER63B DNA MER1_type -118 318 3 24 53 0 0 chr9 292618 292656 -117569971 + AT_rich Low_complexity Low_complexity 1 38 0 1056 140 62 6 chr9 293427 293606 -117569021 - MER5A DNA MER1_type 0 189 1 2271 112 3 0 chr9 293969 294273 -117568354 + AluSx SINE Alu 1 305 -7 2127 127 3 13 chr9 295361 295661 -117566966 - AluSx SINE Alu -15 297 1 413 333 0 0 chr9 295909 296023 -117566604 + MER81 DNA DNA 1 114 0 357 256 23 38 chr9 296319 296372 -117566255 - MIR3 SINE MIR -2 206 154 647 185 204 0 chr9 296372 296400 -117566227 + MER5A DNA MER1_type 1 22 -167 261 0 0 0 chr9 296400 296429 -117566198 + (CAG)n Simple_repeat Simple_repeat 1 29 0 647 185 204 0 chr9 296429 296541 -117566086 + MER5A DNA MER1_type 22 178 -11 1654 134 37 50 chr9 296541 296840 -117565787 + AluJb SINE Alu 1 295 -17 647 185 204 0 chr9 296840 296855 -117565772 + MER5A DNA MER1_type 178 189 0 357 256 23 38 chr9 296855 296934 -117565693 - MIR3 SINE MIR -54 154 76 686 302 122 26 chr9 297456 298256 -117564371 + L2 LINE L2 2432 3304 -9 207 0 0 0 chr9 298629 298652 -117563975 + (T)n Simple_repeat Simple_repeat 1 23 0 2203 121 3 0 chr9 298664 298961 -117563666 + AluSq SINE Alu 1 298 -15 1283 152 5 0 chr9 299725 299922 -117562705 + AluJo SINE Alu 114 311 -1 376 191 35 71 chr9 300157 300298 -117562329 - MIR SINE MIR 0 262 127 706 320 39 48 chr9 300596 301111 -117561516 - LTR33 LTR ERVL -4 517 8 315 0 0 0 chr9 302339 302374 -117560253 + (TAG)n Simple_repeat Simple_repeat 1 35 0 230 179 0 15 chr9 302664 302731 -117559896 + (TA)n Simple_repeat Simple_repeat 2 67 0 298 147 0 44 chr9 303747 303815 -117558812 + L1ME4a LINE L1 6056 6120 -1 1597 128 4 32 chr9 303930 304179 -117558448 + AluSx SINE Alu 62 303 -9 1150 222 15 11 chr9 304194 304214 -117558413 + L1MC4 LINE L1 7775 7793 -249 2117 123 0 3 chr9 304214 304506 -117558121 + AluSx SINE Alu 1 291 -21 1150 222 15 11 chr9 304506 304751 -117557876 + L1MC4 LINE L1 7793 8041 -1 255 335 49 18 chr9 304856 305020 -117557607 - MIR SINE MIR -40 222 54 23 33 0 0 chr9 305343 305373 -117557254 + AT_rich Low_complexity Low_complexity 1 30 0 358 205 134 0 chr9 305647 305759 -117556868 + L1ME4a LINE L1 5879 6005 -116 1113 156 0 8 chr9 306698 307001 -117555626 + (CCA)n Simple_repeat Simple_repeat 1 477 0 933 140 0 0 chr9 307001 307179 -117555448 + (CCA)n Simple_repeat Simple_repeat 2 179 0 1092 106 0 0 chr9 307196 307375 -117555252 + (CCA)n Simple_repeat Simple_repeat 1 179 0 1113 117 0 0 chr9 307536 307901 -117554726 + (CCA)n Simple_repeat Simple_repeat 1 365 0 226 354 13 0 chr9 308097 308176 -117554451 + MIR SINE MIR 66 145 -63 1873 219 54 46 chr9 308177 308717 -117553910 - LTR55 LTR ERV -4 544 1 262 167 0 0 chr9 308766 308808 -117553819 + 5S rRNA rRNA 1 42 -79 286 290 9 19 chr9 309160 309267 -117553360 + CT-rich Low_complexity Low_complexity 2 107 0 328 333 57 0 chr9 309290 309413 -117553214 + MIR3 SINE MIR 31 160 -48 2128 122 3 0 chr9 309867 310161 -117552466 - AluSx SINE Alu -17 295 1 1964 110 15 15 chr9 310574 310831 -117551796 + AluSx SINE Alu 21 277 -35 315 0 0 0 chr9 310831 310866 -117551761 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 870 83 0 0 chr9 310865 310985 -117551642 + (TA)n Simple_repeat Simple_repeat 1 120 0 1964 110 15 15 chr9 310866 310999 -117551628 + AluSx SINE Alu 276 292 -20 301 205 70 123 chr9 312378 312549 -117550078 + MER103 DNA DNA 3 164 -2 1803 159 23 7 chr9 313184 313486 -117549141 + AluSx SINE Alu 1 307 -5 219 292 22 0 chr9 313707 313796 -117548831 + MIR SINE MIR 81 171 -91 398 174 61 98 chr9 314718 314850 -117547777 - L2 LINE L2 0 3313 3187 345 140 0 0 chr9 315834 315891 -117546736 + (CA)n Simple_repeat Simple_repeat 2 58 0 21 57 0 0 chr9 316511 316546 -117546081 + AT_rich Low_complexity Low_complexity 1 35 0 3550 43 86 0 chr9 316554 316975 -117545652 - L1PA5 LINE L1 0 6154 5698 491 36 0 0 chr9 316975 317031 -117545596 + L1PA5 LINE L1 5654 5709 -445 544 256 145 0 chr9 317099 317306 -117545321 - L1ME3 LINE L1 -2 6160 5924 569 251 74 39 chr9 317307 317538 -117545089 - L1ME3 LINE L1 -279 5883 5645 8724 196 42 51 chr9 317633 318103 -117544524 + L1MB7 LINE L1 3077 3550 -2634 2143 114 0 0 chr9 318103 318384 -117544243 + AluSq SINE Alu 1 281 -32 198 0 0 0 chr9 318387 318409 -117544218 + (TAA)n Simple_repeat Simple_repeat 2 23 0 8724 196 42 51 chr9 318409 319093 -117543534 + L1MB7 LINE L1 3552 4240 -1944 1976 159 0 6 chr9 319093 319407 -117543220 + AluJb SINE Alu 1 312 0 8724 196 42 51 chr9 319407 320830 -117541797 + L1MB7 LINE L1 4240 5624 -560 2105 101 38 7 chr9 320830 321118 -117541509 + AluSq SINE Alu 1 297 -16 8724 196 42 51 chr9 321118 321368 -117541259 + L1MB7 LINE L1 5624 5875 -309 238 266 78 0 chr9 321371 321435 -117541192 - MIR SINE MIR -192 70 2 185 293 86 0 chr9 321511 321569 -117541058 - MIR SINE MIR -198 64 2 202 276 86 0 chr9 321578 321636 -117540991 - MIR SINE MIR -198 64 2 247 271 18 53 chr9 322045 322150 -117540477 - Charlie7 DNA MER1_type -1 2611 2513 213 39 0 0 chr9 322150 322176 -117540451 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 247 271 18 53 chr9 322176 322240 -117540387 - Charlie7 DNA MER1_type -99 2513 2448 204 206 0 0 chr9 322632 322666 -117539961 + (CGTG)n Simple_repeat Simple_repeat 4 37 0 353 338 54 39 chr9 323598 323802 -117538825 + MIR SINE MIR 19 225 -37 1803 130 45 0 chr9 323985 324278 -117538349 + AluSx SINE Alu 1 305 0 2111 109 26 13 chr9 325236 325540 -117537087 - AluSx SINE Alu -4 308 1 748 226 164 47 chr9 329464 329686 -117532941 + L1ME4a LINE L1 5666 5861 -260 2283 96 0 0 chr9 329686 329979 -117532648 + AluSx SINE Alu 12 304 -8 748 226 164 47 chr9 329979 330164 -117532463 + L1ME4a LINE L1 5861 6121 0 22 70 0 0 chr9 330564 330607 -117532020 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 331098 331119 -117531508 + AT_rich Low_complexity Low_complexity 1 21 0 729 229 38 0 chr9 331179 331336 -117531291 + MER5B DNA MER1_type 1 163 -15 2138 152 0 0 chr9 331372 331682 -117530945 - AluJb SINE Alu -2 310 1 646 142 21 57 chr9 331683 331824 -117530803 + L1MB4 LINE L1 6045 6180 0 1475 173 51 19 chr9 331858 332171 -117530456 + MER33 DNA MER1_type 2 324 0 2509 68 0 0 chr9 332223 332531 -117530096 + AluYb8 SINE Alu 1 308 -10 271 100 0 0 chr9 332540 332580 -117530047 + L1MB3 LINE L1 6133 6172 -11 1124 123 59 0 chr9 332581 332751 -117529876 + AluJo SINE Alu 125 304 -8 280 304 109 38 chr9 334275 334459 -117528168 + MER117 DNA MER1_type 1 197 0 2052 120 3 0 chr9 335933 336239 -117526388 - AluSx SINE Alu 0 307 1 2030 157 3 0 chr9 337065 337371 -117525256 + AluSx SINE Alu 1 307 -5 1867 126 55 14 chr9 337374 337667 -117524960 + AluSx SINE Alu 3 307 -5 1750 164 7 20 chr9 337841 338146 -117524481 - AluJo SINE Alu -11 301 1 1843 134 22 0 chr9 338487 338763 -117523864 - AluSx SINE Alu -18 294 13 228 204 20 0 chr9 339351 339400 -117523227 + (TA)n Simple_repeat Simple_repeat 1 50 0 29 47 0 0 chr9 341150 341193 -117521434 + AT_rich Low_complexity Low_complexity 1 43 0 1243 142 32 41 chr9 341977 342196 -117520431 + MER20 DNA MER1_type 1 217 -2 304 245 135 74 chr9 342283 342446 -117520181 - MIR SINE MIR -5 257 85 21 0 0 0 chr9 343507 343528 -117519099 + AT_rich Low_complexity Low_complexity 1 21 0 928 261 97 44 chr9 344092 344505 -117518122 - MLT1K LTR MaLR -25 563 129 263 232 58 29 chr9 345108 345177 -117517450 + 7SK RNA RNA 7 77 -116 732 296 16 0 chr9 345179 345368 -117517259 + MER117 DNA MER1_type 5 196 -1 528 289 16 0 chr9 345486 345607 -117517020 + MER96 DNA MER1_type? 50 172 -3 308 274 12 12 chr9 346623 346707 -117515920 - MIR SINE MIR -111 151 68 2100 132 0 3 chr9 346992 347288 -117515339 - AluSx SINE Alu -13 299 5 22 0 0 0 chr9 347442 347464 -117515163 + AT_rich Low_complexity Low_complexity 1 22 0 1704 174 23 7 chr9 347702 348006 -117514621 - AluJo SINE Alu -3 309 1 198 404 11 9 chr9 349881 350017 -117512610 - MIR3 SINE MIR -89 119 13 770 302 60 8 chr9 350675 350923 -117511704 - MIR SINE MIR 0 262 2 1113 268 140 49 chr9 351117 351308 -117511319 - MER21B LTR ERV1 -154 709 537 270 0 0 0 chr9 351308 351338 -117511289 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1113 268 140 49 chr9 351338 351796 -117510831 - MER21B LTR ERV1 -326 537 1 1620 218 40 17 chr9 352480 352999 -117509628 - L1ME1 LINE L1 -28 6138 5441 38 107 0 0 chr9 353777 353927 -117508700 + AT_rich Low_complexity Low_complexity 1 150 0 203 0 37 0 chr9 355008 355035 -117507592 + (TTTCC)n Simple_repeat Simple_repeat 2 29 0 1646 156 13 49 chr9 355067 355375 -117507252 - AluJo SINE Alu -10 302 6 2226 131 12 72 chr9 355435 355840 -117506787 - MLT1B LTR MaLR -7 383 3 2142 117 3 0 chr9 356041 356323 -117506304 + AluSp SINE Alu 1 309 0 214 39 0 0 chr9 356323 356349 -117506278 + (TAAA)n Simple_repeat Simple_repeat 2 76 0 394 307 136 6 chr9 356396 356572 -117506055 + MIR SINE MIR 20 218 -44 2172 128 7 0 chr9 358004 358310 -117504317 + AluSx SINE Alu 2 309 -3 1822 162 7 3 chr9 358314 358611 -117504016 + AluJb SINE Alu 1 298 -14 315 167 0 62 chr9 358847 358943 -117503684 - L1MC4 LINE L1 -1339 6703 6614 225 0 0 0 chr9 358950 358975 -117503652 + (T)n Simple_repeat Simple_repeat 1 25 0 1096 176 11 0 chr9 359124 359311 -117503316 + MER5A DNA MER1_type 1 189 0 461 253 15 32 chr9 359393 359551 -117503076 - MIR SINE MIR -56 152 28 2142 148 0 0 chr9 360395 360699 -117501928 - AluSx SINE Alu -8 304 1 444 132 15 0 chr9 360701 360769 -117501858 - AluJo SINE Alu -178 134 66 31 26 0 0 chr9 360781 360819 -117501808 + AT_rich Low_complexity Low_complexity 1 38 0 1556 135 135 17 chr9 361174 361470 -117501157 + MER44D DNA MER2_type 1 601 -8 574 203 104 12 chr9 362125 362185 -117500442 - MER5A DNA MER1_type -3 186 133 2001 111 3 51 chr9 362185 362501 -117500126 + AluJb SINE Alu 1 301 -11 574 203 104 12 chr9 362501 362603 -117500024 - MER5A DNA MER1_type -56 133 9 213 65 0 0 chr9 362740 362771 -117499856 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 298 113 75 0 chr9 362883 362936 -117499691 - L2 LINE L2 0 3313 3257 392 216 18 9 chr9 363081 363192 -117499435 + L1MB8 LINE L1 6064 6175 -3 760 249 72 17 chr9 364171 364408 -117498219 + MIR SINE MIR 2 251 -11 366 275 36 22 chr9 364557 364695 -117497932 + MIR3 SINE MIR 30 169 -39 932 263 22 0 chr9 364785 365013 -117497614 - MIR SINE MIR -29 233 1 813 234 202 55 chr9 365023 365458 -117497169 - MLT1J LTR MaLR -12 499 1 1832 156 10 10 chr9 365501 365789 -117496838 + AluJb SINE Alu 1 288 -24 311 150 62 0 chr9 366414 366484 -117496143 - MLT1G LTR MaLR -5 590 482 577 267 241 12 chr9 366675 367028 -117495599 - MLT1G LTR MaLR -196 394 1 270 192 55 27 chr9 367064 367137 -117495490 - MIR SINE MIR -70 192 118 646 238 70 70 chr9 368220 368500 -117494127 - L1MEd LINE L1 -4897 1222 940 2030 159 0 6 chr9 368500 368814 -117493813 - AluJb SINE Alu 0 312 1 646 238 70 70 chr9 368814 368861 -117493766 - L1MEd LINE L1 -5178 941 895 578 308 81 65 chr9 368881 369785 -117492842 - L1MEd LINE L1 -5191 928 11 435 303 86 6 chr9 369835 370010 -117492617 + MIR SINE MIR 49 237 -25 908 181 6 6 chr9 370083 370243 -117492384 + FRAM SINE Alu 1 160 -6 387 302 0 9 chr9 370271 370387 -117492240 - MER5B DNA MER1_type -58 120 6 197 95 0 24 chr9 370915 370957 -117491670 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 24 0 0 0 chr9 372154 372178 -117490449 + AT_rich Low_complexity Low_complexity 1 24 0 319 222 72 105 chr9 372949 373102 -117489525 + L2 LINE L2 3166 3313 0 1321 158 59 65 chr9 373127 373204 -117489423 - MER33 DNA MER1_type -2263 322 246 2037 137 0 14 chr9 373204 373496 -117489131 + AluJb SINE Alu 1 288 -24 1321 158 59 65 chr9 373496 373740 -117488887 - MER33 DNA MER1_type -2339 246 3 2347 86 0 0 chr9 374507 374797 -117487830 - AluSx SINE Alu -10 302 13 2259 56 3 25 chr9 374853 375183 -117487444 + AluY SINE Alu 2 325 0 1871 158 36 7 chr9 375187 375490 -117487137 + AluJo SINE Alu 1 312 0 269 307 70 26 chr9 375948 376062 -117486565 + MIR SINE MIR 29 147 -61 1090 221 45 5 chr9 378594 378816 -117483811 + AluJo SINE Alu 2 232 -80 581 186 57 44 chr9 379484 379650 -117482977 + MLT1H LTR MaLR 66 242 -307 570 226 17 0 chr9 379651 379766 -117482861 - MER45A DNA AcHobo -1 177 61 283 340 107 15 chr9 380077 380274 -117482353 - MIR SINE MIR -23 239 25 2281 103 0 0 chr9 380675 380965 -117481662 - AluSc SINE Alu -14 295 6 354 313 157 35 chr9 381268 381498 -117481129 + MIR SINE MIR 5 262 0 3671 162 15 5 chr9 381894 382485 -117480142 + MER50 LTR ERV1 1 597 -137 2248 90 66 0 chr9 382485 382817 -117479810 + MER4E LTR ERV1 1 354 -425 1639 143 0 8 chr9 382819 383086 -117479541 - AluSx SINE Alu 0 306 42 325 43 0 0 chr9 383086 383133 -117479494 + AluSp/q SINE Alu 253 299 -4 2363 90 0 7 chr9 383211 383511 -117479116 + AluSx SINE Alu 1 298 -14 885 125 42 0 chr9 385894 386038 -117476589 - AluSq SINE Alu -12 301 152 280 221 26 13 chr9 386213 386290 -117476337 - MLT1K LTR MaLR -2 586 509 207 271 21 42 chr9 386441 386537 -117476090 - MIR SINE MIR -101 161 68 186 365 129 0 chr9 387669 387754 -117474873 + L3 LINE CR1 1432 1527 -50 2180 136 48 8 chr9 387895 388247 -117474380 - MER47A DNA MER2_type 0 366 1 203 27 0 81 chr9 388253 388290 -117474337 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 845 107 0 0 chr9 388721 388833 -117473794 + FRAM SINE Alu 52 163 -13 358 305 94 24 chr9 389368 389581 -117473046 - MIR SINE MIR -3 259 32 2454 169 69 9 chr9 389785 390246 -117472381 + MER44D DNA MER2_type 59 602 -3 472 262 7 35 chr9 390266 390407 -117472220 - MER5B DNA MER1_type -22 156 20 287 349 0 0 chr9 390459 390568 -117472059 + MIR SINE MIR 84 192 -70 418 253 108 6 chr9 391238 391404 -117471223 + MIR SINE MIR 60 242 -20 793 261 48 102 chr9 392069 392267 -117470360 + MLT1K LTR MaLR 74 281 -307 563 173 58 14 chr9 392267 392406 -117470221 - L1MB8 LINE L1 -1 6177 6033 793 261 48 102 chr9 392406 392563 -117470064 + MLT1K LTR MaLR 281 395 -193 2357 101 10 0 chr9 392563 392870 -117469757 + AluSx SINE Alu 1 310 -2 793 261 48 102 chr9 392870 393033 -117469594 + MLT1K LTR MaLR 395 565 -23 192 125 0 0 chr9 393315 393347 -117469280 + (CAT)n Simple_repeat Simple_repeat 2 33 0 1064 245 4 16 chr9 393353 393602 -117469025 - MIR SINE MIR -15 247 2 2223 133 23 8 chr9 394146 394498 -117468129 + MER47A DNA MER2_type 1 357 -9 277 319 81 56 chr9 395450 395610 -117467017 + MIR SINE MIR 34 197 -65 276 233 200 25 chr9 395874 395994 -117466633 + MIR3 SINE MIR 6 146 -62 262 316 34 34 chr9 396040 396157 -117466470 + L2 LINE L2 3197 3313 0 564 149 0 0 chr9 396334 396421 -117466206 + MER53 DNA DNA 3 89 -100 476 188 0 0 chr9 396354 396439 -117466188 - MER53 DNA DNA -12 177 93 * 241 271 156 0 chr9 396613 396709 -117465918 + MIR SINE MIR 152 262 0 1515 189 7 28 chr9 397192 397507 -117465120 + AluJo SINE Alu 1 309 0 1065 224 74 82 chr9 397692 397931 -117464696 - L2 LINE L2 -1 3312 3073 1854 178 0 3 chr9 397931 398229 -117464398 - AluJo SINE Alu -11 301 5 1065 224 74 82 chr9 398229 398243 -117464384 - L2 LINE L2 -240 3073 3060 2306 95 0 3 chr9 398243 398539 -117464088 - AluSc SINE Alu -14 295 1 1065 224 74 82 chr9 398539 398677 -117463950 - L2 LINE L2 -253 3060 2922 2440 130 5 19 chr9 398677 399046 -117463581 + THE1B LTR MaLR 1 364 0 1065 224 74 82 chr9 399046 399139 -117463488 - L2 LINE L2 -391 2922 2830 482 215 30 122 chr9 399359 399596 -117463031 + MIR SINE MIR 48 262 0 2448 83 3 13 chr9 399715 400028 -117462599 + AluSp SINE Alu 1 310 -3 1701 210 81 79 chr9 400052 400527 -117462100 + MLT1F LTR MaLR 35 513 -29 2248 92 31 0 chr9 400527 400819 -117461808 - AluSx SINE Alu -11 301 1 1701 210 81 79 chr9 400819 400848 -117461779 + MLT1F LTR MaLR 513 540 -2 2337 102 0 0 chr9 400859 401152 -117461475 - AluSg SINE Alu -16 294 2 835 218 107 55 chr9 401431 401697 -117460930 + MLT1F1 LTR MaLR 73 363 -204 198 0 0 0 chr9 402941 402963 -117459664 + (CA)n Simple_repeat Simple_repeat 2 23 0 513 285 77 27 chr9 403010 403231 -117459396 + MIR SINE MIR 29 260 -2 1945 143 0 11 chr9 403244 403582 -117459045 + AluSx SINE Alu 1 335 0 222 233 33 33 chr9 403730 403790 -117458837 + L2 LINE L2 3213 3272 0 25 65 0 0 chr9 403887 403933 -117458694 + AT_rich Low_complexity Low_complexity 1 46 0 195 69 0 0 chr9 404403 404432 -117458195 + (CA)n Simple_repeat Simple_repeat 1 29 0 1679 134 4 4 chr9 404581 404827 -117457800 + AluJb SINE Alu 39 284 -28 183 42 0 0 chr9 404832 404856 -117457771 + (CA)n Simple_repeat Simple_repeat 1 24 0 254 287 0 46 chr9 405080 405167 -117457460 - MIR SINE MIR -74 188 106 2872 166 23 32 chr9 405464 405868 -117456759 + L1MB7 LINE L1 5202 5600 -578 2420 74 0 3 chr9 405868 406165 -117456462 + AluY SINE Alu 1 296 -15 2872 166 23 32 chr9 406165 406397 -117456230 + L1MB7 LINE L1 5600 5833 -345 2720 157 48 0 chr9 406665 407142 -117455485 - MER34 LTR ERV1 -16 526 27 294 73 0 0 chr9 408573 408614 -117454013 + (CA)n Simple_repeat Simple_repeat 1 41 0 568 190 52 35 chr9 408703 408819 -117453808 - FLAM_C SINE Alu -15 118 1 1662 171 67 3 chr9 408995 409340 -117453287 + L1MB7 LINE L1 5818 6184 0 2075 111 20 10 chr9 409501 409798 -117452829 - AluSx SINE Alu -12 300 1 1604 162 33 46 chr9 409808 410111 -117452516 - AluJb SINE Alu -13 299 1 300 385 7 28 chr9 410230 410373 -117452254 - MIR3 SINE MIR -33 175 36 21 57 0 0 chr9 411735 411770 -117450857 + GC_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr9 412057 412078 -117450549 + GC_rich Low_complexity Low_complexity 1 21 0 661 198 99 28 chr9 412977 413159 -117449468 - L1MB7 LINE L1 -2 6182 5988 237 65 0 0 chr9 413500 413531 -117449096 + (TG)n Simple_repeat Simple_repeat 1 31 0 1355 130 0 10 chr9 414139 414331 -117448296 + AluJo SINE Alu 97 286 -26 923 142 7 13 chr9 414363 414381 -117448246 - AluSx SINE Alu -158 154 137 1977 113 7 18 chr9 414381 414529 -117448098 - AluSq SINE Alu -32 281 136 2380 85 0 3 chr9 414529 414823 -117447804 - AluSc SINE Alu -11 298 6 1977 113 7 18 chr9 414823 414958 -117447669 - AluSq SINE Alu -177 136 1 923 142 7 13 chr9 414958 415094 -117447533 - AluSx SINE Alu -175 137 1 2451 77 6 0 chr9 415098 415409 -117447218 - AluSp SINE Alu 0 313 1 1567 267 68 34 chr9 415416 416007 -117446620 - L1ME3A LINE L1 -44 6126 5516 2194 96 7 0 chr9 416072 416363 -117446264 - AluSc SINE Alu -12 297 5 1740 157 0 51 chr9 416773 417085 -117445542 - AluJo SINE Alu -16 296 1 629 200 45 7 chr9 418370 418525 -117444102 + MIR SINE MIR 39 199 -63 1163 248 74 76 chr9 418784 419161 -117443466 - MLT1H1 LTR MaLR -4 622 207 999 231 54 30 chr9 419165 419203 -117443424 - MLT2D LTR ERVL 0 414 378 195 42 0 0 chr9 419203 419227 -117443400 + (TG)n Simple_repeat Simple_repeat 2 25 0 999 231 54 30 chr9 419227 419521 -117443106 - MLT2D LTR ERVL -36 378 74 557 229 83 13 chr9 419560 419717 -117442910 - MLT1H1 LTR MaLR -400 190 23 331 238 38 23 chr9 419741 419878 -117442749 - HAL1b LINE L1 -199 2308 785 1933 113 0 4 chr9 420741 420997 -117441630 + AluSx SINE Alu 36 290 -22 1188 111 0 0 chr9 421073 421253 -117441374 + (TCCC)n Simple_repeat Simple_repeat 1 180 0 1856 236 158 2 chr9 421435 421974 -117440653 - L1ME3A LINE L1 -159 6011 5389 2499 69 0 7 chr9 422034 422340 -117440287 + AluY SINE Alu 1 304 -7 261 0 0 0 chr9 423971 424000 -117438627 + (CA)n Simple_repeat Simple_repeat 2 30 0 2088 112 20 3 chr9 424080 424375 -117438252 - AluSg SINE Alu -10 300 1 2137 129 3 0 chr9 424708 425010 -117437617 - AluSx SINE Alu -9 303 1 2339 97 3 0 chr9 425862 426160 -117436467 - AluSp SINE Alu -12 301 3 2021 150 0 10 chr9 427028 427335 -117435292 + AluJb SINE Alu 1 304 -8 264 271 85 42 chr9 427355 427473 -117435154 - MLT1I LTR MaLR -232 177 55 2219 112 3 3 chr9 428535 428840 -117433787 - AluSx SINE Alu -7 305 1 23 0 0 0 chr9 429198 429221 -117433406 + AT_rich Low_complexity Low_complexity 1 23 0 1268 276 173 28 chr9 429970 430997 -117431630 + L2 LINE L2 2131 3307 -6 2040 143 3 0 chr9 431488 431789 -117430838 - AluSx SINE Alu -10 302 1 2316 96 0 26 chr9 431955 432267 -117430360 - AluSx SINE Alu -8 304 1 306 0 0 0 chr9 432323 432357 -117430270 + (TG)n Simple_repeat Simple_repeat 2 35 0 1721 115 4 27 chr9 432358 432619 -117430008 - AluSx SINE Alu -23 289 35 916 141 7 0 chr9 433403 433538 -117429089 + AluJo SINE Alu 1 136 -176 259 241 0 0 chr9 433704 433758 -117428869 + MER116 DNA Mariner 5 58 -22 708 251 137 38 chr9 433760 434182 -117428445 - HAL1 LINE L1 -167 2340 1877 1083 233 149 73 chr9 434185 434255 -117428372 - HAL1 LINE L1 -719 1788 1725 1874 151 3 0 chr9 434255 434573 -117428054 - AluSq SINE Alu 0 319 1 1083 233 149 73 chr9 434573 434839 -117427788 - HAL1 LINE L1 -782 1725 1481 2119 73 59 21 chr9 434839 435128 -117427499 + AluY SINE Alu 1 300 -11 1083 233 149 73 chr9 435128 435432 -117427195 - HAL1 LINE L1 -1026 1481 1097 2307 89 3 22 chr9 435442 435755 -117426872 - AluSx SINE Alu 0 312 6 1929 157 7 0 chr9 435778 436071 -117426556 - AluJb SINE Alu -17 295 1 402 100 0 0 chr9 436207 436267 -117426360 + (CA)n Simple_repeat Simple_repeat 2 61 0 434 83 0 4 chr9 436267 436471 -117426156 - AluSc SINE Alu -17 292 1 1152 309 100 17 chr9 436486 437075 -117425552 - L1MC4a LINE L1 -1847 5961 5324 21 0 0 0 chr9 437272 437293 -117425334 + AT_rich Low_complexity Low_complexity 1 21 0 273 241 114 32 chr9 437293 437451 -117425176 - L1P LINE L1 -1090 5056 4886 1450 169 126 0 chr9 437679 437940 -117424687 + AluJb SINE Alu 1 294 -18 1690 182 31 3 chr9 438129 438420 -117424207 + AluJo SINE Alu 1 299 -13 185 0 40 0 chr9 438817 438842 -117423785 + (TG)n Simple_repeat Simple_repeat 1 26 0 962 86 0 0 chr9 439204 439332 -117423295 - AluSp/q SINE Alu -3 310 183 198 0 0 0 chr9 439337 439359 -117423268 + (T)n Simple_repeat Simple_repeat 1 22 0 1096 151 13 23 chr9 439359 439586 -117423041 - L1MB3 LINE L1 -36 6147 5917 300 297 97 0 chr9 440290 440435 -117422192 + MIR SINE MIR 72 230 -32 199 250 44 0 chr9 442396 442464 -117420163 - MIR SINE MIR -3 259 189 1003 235 12 20 chr9 442714 442969 -117419658 - MLT1D-int LTR MaLR -1118 253 1 1803 181 37 103 chr9 442971 443032 -117419595 - MLT1D LTR MaLR -4 501 438 2010 124 7 14 chr9 443032 443322 -117419305 + AluSx SINE Alu 5 292 -20 1803 181 37 103 chr9 443322 443796 -117418831 - MLT1D LTR MaLR -67 438 1 866 126 161 60 chr9 444628 444827 -117417800 + MER20 DNA MER1_type 1 219 0 197 274 36 48 chr9 445111 445195 -117417432 + MIR SINE MIR 96 178 -84 195 290 65 0 chr9 445702 445764 -117416863 + MIR SINE MIR 117 182 -80 2166 131 7 0 chr9 445847 446153 -117416474 - AluSx SINE Alu -4 308 1 7331 171 100 16 chr9 446185 446466 -117416161 - L1 LINE L1 -1446 4700 4444 1903 164 17 3 chr9 446466 446759 -117415868 - AluJo SINE Alu -15 297 1 7331 171 100 16 chr9 446759 448089 -117414538 - L1 LINE L1 -1702 4444 2954 2175 201 21 70 chr9 448108 448412 -117414215 + L1MA9 LINE L1 4695 5012 -1172 243 108 0 0 chr9 448412 448449 -117414178 + tRNA-Cys-TGC tRNA tRNA 1 37 -38 2175 201 21 70 chr9 448449 448780 -117413847 + L1MA9 LINE L1 5012 5322 -862 2752 10 0 0 chr9 448780 449073 -117413554 + AluY SINE Alu 1 293 -18 2175 201 21 70 chr9 449073 449188 -117413439 + L1MA9 LINE L1 5322 5441 -743 932 113 8 15 chr9 449189 449322 -117413305 + AluSq/x SINE Alu 1 132 -180 3930 164 91 17 chr9 449322 450140 -117412487 + L1MA9 LINE L1 5432 6309 -3 2311 108 0 10 chr9 450246 450552 -117412075 + AluSq SINE Alu 1 303 -10 257 27 54 0 chr9 450971 451008 -117411619 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 1831 151 18 7 chr9 451011 451295 -117411332 - AluJo SINE Alu -25 287 1 193 333 86 37 chr9 451794 451956 -117410671 - L2 LINE L2 -491 2823 2654 327 282 189 18 chr9 452202 452535 -117410092 - L2 LINE L2 -881 2433 2044 2299 84 3 34 chr9 452697 453019 -117409608 - AluSx SINE Alu 0 312 1 340 352 101 6 chr9 453021 453180 -117409447 - MER91A DNA MER1_type -19 177 4 1107 203 28 24 chr9 453196 453408 -117409219 + MER20 DNA MER1_type 7 219 0 24 67 0 0 chr9 455688 455733 -117406894 + AT_rich Low_complexity Low_complexity 1 45 0 895 137 0 30 chr9 455769 455900 -117406727 + AluJo SINE Alu 1 127 -185 863 191 19 0 chr9 457436 457593 -117405034 + AluJo SINE Alu 137 296 -6 546 318 68 79 chr9 458583 458738 -117403889 - L2 LINE L2 -35 3237 3082 1972 142 13 26 chr9 458738 459041 -117403586 + AluJo SINE Alu 1 299 -13 546 318 68 79 chr9 459041 459225 -117403402 - L2 LINE L2 -190 3082 2902 248 303 15 0 chr9 459227 459293 -117403334 - L2 LINE L2 -626 2688 2622 2037 116 3 14 chr9 459835 460128 -117402499 + AluJo SINE Alu 1 290 -22 316 281 174 20 chr9 460297 460493 -117402134 - MIR SINE MIR -17 245 20 22 0 0 0 chr9 460853 460875 -117401752 + AT_rich Low_complexity Low_complexity 1 22 0 698 200 14 14 chr9 460876 461021 -117401606 - MER5A DNA MER1_type 0 189 45 1965 155 63 86 chr9 461025 461421 -117401206 - MLT2B2 LTR ERVL -10 505 122 3258 107 40 0 chr9 461421 461915 -117400712 - MER75 DNA T2_type 0 514 1 1965 155 63 86 chr9 461915 462029 -117400598 - MLT2B2 LTR ERVL -393 122 7 298 180 0 0 chr9 462035 462085 -117400542 - MER5A DNA MER1_type -138 51 2 931 189 6 6 chr9 464010 464179 -117398448 + AluJb SINE Alu 139 307 -5 323 269 51 30 chr9 464191 464388 -117398239 + L1MC5 LINE L1 7713 7913 -48 1566 171 91 0 chr9 464718 464993 -117397634 + AluJb SINE Alu 1 300 -12 2140 210 25 30 chr9 465273 465797 -117396830 + MER82 DNA MER2_type 11 531 -122 698 93 21 0 chr9 465798 465895 -117396732 + U6 snRNA snRNA 1 99 -8 466 217 130 0 chr9 465917 466032 -117396595 + MER82 DNA MER2_type 524 653 0 380 346 65 34 chr9 467071 467334 -117395293 + L3 LINE CR1 278 548 -1029 540 306 210 32 chr9 467687 468125 -117394502 + L3 LINE CR1 687 1202 -375 509 247 82 58 chr9 468261 468589 -117394038 - L1ME4a LINE L1 -216 5905 5570 224 298 60 0 chr9 468619 468703 -117393924 + L3 LINE CR1 1462 1550 -27 2916 6 0 0 chr9 469011 469327 -117393300 - AluYb8 SINE Alu -2 316 1 302 333 94 19 chr9 469539 469698 -117392929 + MIR SINE MIR 90 260 -2 238 289 144 0 chr9 469761 469858 -117392769 + L2 LINE L2 3198 3308 -5 2409 62 0 10 chr9 471028 471335 -117391292 - AluY SINE Alu -7 304 1 2811 167 84 71 chr9 472371 472841 -117389786 - LTR8A LTR ERV1 0 727 243 5529 113 25 1 chr9 472841 474289 -117388338 - L1PA13 LINE L1 -11 6152 4681 2811 167 84 71 chr9 474289 474536 -117388091 - LTR8A LTR ERV1 -484 243 1 259 218 128 0 chr9 474987 475065 -117387562 - MIR SINE MIR -91 171 84 286 163 0 0 chr9 475442 475491 -117387136 - Alu SINE Alu -20 282 234 1530 175 46 15 chr9 475492 475755 -117386872 - AluJo SINE Alu -41 271 1 2518 103 83 2 chr9 476240 476636 -117385991 + MSTC LTR MaLR 1 428 0 310 278 25 102 chr9 477847 478092 -117384535 - L1ME LINE L1 -384 5737 5512 28 0 0 0 chr9 478534 478562 -117384065 + AT_rich Low_complexity Low_complexity 1 28 0 1757 161 13 26 chr9 479125 479301 -117383326 - AluJo SINE Alu -6 306 134 1858 80 0 8 chr9 479301 479539 -117383088 + AluY SINE Alu 57 292 -19 1757 161 13 26 chr9 479539 479672 -117382955 - AluJo SINE Alu -178 134 1 468 70 0 0 chr9 480239 480319 -117382308 - Alu SINE Alu 0 307 228 1994 31 0 0 chr9 480419 480648 -117381979 - AluYb8 SINE Alu -73 245 17 27 73 0 0 chr9 481543 481598 -117381029 + AT_rich Low_complexity Low_complexity 1 55 0 1724 177 7 0 chr9 531834 532117 -117330510 - AluJo SINE Alu -27 285 1 2166 184 71 113 chr9 532236 532985 -117329642 - LTR8A LTR ERV1 -24 685 1 432 277 44 22 chr9 532986 533123 -117329504 - MLT1L LTR MaLR -128 487 348 340 289 44 0 chr9 533155 533269 -117329358 - MLT1L LTR MaLR -339 276 158 1977 115 83 0 chr9 533853 534141 -117328486 - AluSx SINE Alu 0 312 1 432 275 67 13 chr9 534243 534392 -117328235 - MER5B DNA MER1_type -16 162 6 2186 108 10 3 chr9 534752 535057 -117327570 + AluSg SINE Alu 1 307 -3 879 231 16 11 chr9 535624 535806 -117326821 - MER5A DNA MER1_type -6 183 1 181 125 25 0 chr9 535963 536003 -117326624 + MER5C DNA MER1_type 234 274 -50 480 292 26 13 chr9 536052 536206 -117326421 - MLT1L LTR MaLR -113 502 347 723 194 52 0 chr9 536345 536479 -117326148 - MSTC LTR MaLR -2 426 286 1985 139 30 0 chr9 537482 537783 -117324844 - AluSx SINE Alu -2 310 1 1866 189 36 25 chr9 537859 538219 -117324408 - MLT1A1 LTR MaLR -1 364 1 1070 133 36 0 chr9 538403 538569 -117324058 - AluSg/x SINE Alu -7 305 134 2070 129 3 0 chr9 538569 538863 -117323764 - AluSx SINE Alu -17 295 1 2291 95 0 0 chr9 538866 539162 -117323465 - AluY SINE Alu -15 296 1 1022 157 8 81 chr9 539966 540214 -117322413 - L1MB8 LINE L1 0 6178 5949 752 163 39 16 chr9 541716 541845 -117320782 - FLAM_C SINE Alu 0 133 2 2228 107 0 10 chr9 541860 542169 -117320458 - AluSx SINE Alu -6 306 1 2824 103 56 15 chr9 542521 542929 -117319698 - MSTA LTR MaLR -3 425 1 2077 127 3 13 chr9 543008 543316 -117319311 + AluSx SINE Alu 4 308 -4 1903 168 3 0 chr9 543331 543628 -117318999 + AluSx SINE Alu 7 304 -8 26 50 0 0 chr9 543692 543732 -117318895 + AT_rich Low_complexity Low_complexity 1 40 0 1284 95 0 18 chr9 543766 543935 -117318692 + AluSq SINE Alu 1 166 -147 504 121 0 0 chr9 543939 544005 -117318622 + AluS SINE Alu 221 286 -24 25 53 0 18 chr9 544353 544378 -117318249 + AT_rich Low_complexity Low_complexity 1 25 -31 821 143 0 53 chr9 544378 544511 -117318116 + FLAM_C SINE Alu 2 127 -6 25 53 0 18 chr9 544511 544542 -117318085 + AT_rich Low_complexity Low_complexity 25 56 0 2018 114 9 44 chr9 544841 545158 -117317469 - AluSx SINE Alu 0 312 7 201 154 0 0 chr9 545383 545422 -117317205 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2340 93 0 10 chr9 546166 546468 -117316159 - AluSc SINE Alu -10 299 1 189 359 0 0 chr9 546741 546794 -117315833 - L2 LINE L2 -87 3185 3133 235 287 109 20 chr9 546854 546955 -117315672 + MIR SINE MIR 107 216 -46 405 206 103 48 chr9 547423 547549 -117315078 - MER94 DNA DNA 0 134 2 339 270 20 10 chr9 548618 548718 -117313909 - MER5A DNA MER1_type -80 109 9 233 298 0 48 chr9 549174 549296 -117313331 + MIR SINE MIR 63 178 -30 271 284 56 128 chr9 550190 550404 -117312223 + L1ME4a LINE L1 5529 5714 -2094 2167 120 0 7 chr9 550404 550703 -117311924 + AluSq SINE Alu 1 297 -16 271 284 56 128 chr9 550703 550808 -117311819 + L1ME4a LINE L1 5714 5825 -1983 256 181 133 133 chr9 550870 550975 -117311652 + L1ME4a LINE L1 5945 6049 -72 355 274 128 34 chr9 551317 551496 -117311131 - MIR3 SINE MIR -9 199 4 587 218 68 0 chr9 552313 552446 -117310181 - MER5A DNA MER1_type -47 142 1 317 273 24 24 chr9 552476 552579 -117310048 + MER5A DNA MER1_type 3 116 -73 312 70 0 0 chr9 552980 553023 -117309604 + (GA)n Simple_repeat Simple_repeat 1 43 0 342 158 18 0 chr9 553056 553113 -117309514 - MER5A DNA MER1_type -131 58 1 472 250 57 10 chr9 553121 553247 -117309380 - MER5B DNA MER1_type 0 178 56 2257 109 0 3 chr9 553253 553557 -117309070 + AluSq SINE Alu 1 303 -10 477 244 179 19 chr9 553650 553806 -117308821 - MER5A DNA MER1_type 0 189 9 3351 176 48 42 chr9 555046 555791 -117306836 - L1MB2 LINE L1 0 6171 5422 726 161 154 0 chr9 556072 556202 -117306425 - FAM SINE Alu -34 151 2 225 293 67 60 chr9 556425 556575 -117306052 + L2 LINE L2 2717 2867 -447 977 213 65 54 chr9 556628 556999 -117305628 - L1MB2 LINE L1 -967 5179 4805 577 291 56 67 chr9 557001 557358 -117305269 + L2 LINE L2 2961 3313 0 909 178 16 27 chr9 557489 557674 -117304953 - MER5A DNA MER1_type -1 188 6 1448 185 240 9 chr9 557674 558020 -117304607 - MSTB LTR MaLR 0 426 1 7108 63 0 0 chr9 559310 560210 -117302417 - L1PA5 LINE L1 -20 6134 5235 4755 82 16 0 chr9 560199 560831 -117301796 + L1P LINE L1 4347 4988 -1158 * 2404 84 0 0 chr9 560831 561127 -117301500 - AluSx SINE Alu -16 296 1 1057 113 33 0 chr9 562373 562524 -117300103 + THE1C LTR MaLR 4 159 -216 1996 140 26 0 chr9 562525 562867 -117299760 - L1MA4 LINE L1 -181 6301 5951 657 125 0 21 chr9 562870 562966 -117299661 - AluJo SINE Alu -177 135 42 12963 177 41 21 chr9 562966 564308 -117298319 - L1MA4 LINE L1 -521 5961 4647 1568 164 40 43 chr9 564308 564607 -117298020 + AluJo SINE Alu 1 298 -14 12963 177 41 21 chr9 564607 566145 -117296482 - L1MA4 LINE L1 -1835 4647 3011 2145 122 34 0 chr9 566145 566441 -117296186 - AluSx SINE Alu -6 306 1 12963 177 41 21 chr9 566441 566810 -117295817 - L1MA4 LINE L1 -3471 3011 2651 583 84 122 0 chr9 566801 566908 -117295719 - L1MA4 LINE L1 -4203 1125 1006 * 7096 180 31 33 chr9 566915 567141 -117295486 - L1M1 LINE L1 -4031 2297 2072 1913 164 105 3 chr9 567141 567446 -117295181 - MER1B DNA MER1_type -1 336 1 7096 180 31 33 chr9 567446 569518 -117293109 - L1M1 LINE L1 -4256 2072 27 1938 72 110 0 chr9 569773 570037 -117292590 + AluY SINE Alu 1 293 -18 1763 79 0 0 chr9 570158 570372 -117292255 + AluSg/x SINE Alu 84 297 -15 240 277 88 22 chr9 570403 570540 -117292087 + MARNA DNA Mariner 424 569 -17 590 297 52 9 chr9 570546 570758 -117291869 + MIR SINE MIR 25 245 -17 2161 125 3 6 chr9 571607 571919 -117290708 - AluSx SINE Alu -1 311 1 2122 114 7 3 chr9 573115 573414 -117289213 - AluSx SINE Alu -12 300 1 25 31 0 0 chr9 573414 573446 -117289181 + AT_rich Low_complexity Low_complexity 1 32 0 423 238 157 22 chr9 573448 573671 -117288956 - L1ME4a LINE L1 -65 6056 5804 4152 138 26 10 chr9 574075 574700 -117287927 - MER41B LTR ERV1 0 635 1 279 318 45 11 chr9 576225 576313 -117286314 + MIR SINE MIR 20 110 -98 364 253 80 49 chr9 576670 576832 -117285795 - MIR SINE MIR -1 261 95 1947 136 11 0 chr9 576864 577150 -117285477 + AluSx SINE Alu 9 297 -15 237 200 31 31 chr9 577689 577754 -117284873 + L1MC4 LINE L1 6636 6700 -1342 200 254 0 18 chr9 577757 577812 -117284815 + (TA)n Simple_repeat Simple_repeat 2 55 0 1978 124 32 3 chr9 577833 578116 -117284511 - AluSx SINE Alu -21 291 1 491 181 86 9 chr9 578971 579076 -117283551 - L2 LINE L2 -14 3299 3187 1828 150 10 26 chr9 579341 579647 -117282980 + AluJo SINE Alu 1 301 -11 219 241 17 121 chr9 579938 580054 -117282573 + MIR SINE MIR 128 231 -31 2263 110 0 0 chr9 580407 580707 -117281920 + AluSx SINE Alu 1 300 -12 508 287 66 26 chr9 580877 581149 -117281478 - L1ME4a LINE L1 -246 5875 5593 186 43 0 0 chr9 585431 585454 -117277173 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 281 263 61 30 chr9 586368 586467 -117276160 - L2 LINE L2 0 3272 3171 2141 111 24 0 chr9 586734 587023 -117275604 + AluSx SINE Alu 2 297 -15 192 77 0 0 chr9 588373 588399 -117274228 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2232 96 0 56 chr9 588415 588738 -117273889 + AluSx SINE Alu 1 305 -7 370 211 21 21 chr9 588852 588947 -117273680 + MIR SINE MIR 127 221 -41 890 155 0 14 chr9 589828 589970 -117272657 - FLAM_C SINE Alu -3 140 1 1810 163 3 17 chr9 590021 590322 -117272305 - AluJb SINE Alu -11 301 5 488 214 57 34 chr9 590925 591072 -117271555 - L1ME1 LINE L1 0 6178 6021 1598 176 54 7 chr9 591142 591420 -117271207 + AluJo SINE Alu 1 291 -21 429 237 215 0 chr9 594155 594290 -117268337 - MIR SINE MIR -87 175 12 2470 38 28 0 chr9 594420 594709 -117267918 + AluY SINE Alu 1 297 -14 180 266 53 96 chr9 594802 594990 -117267637 - L2 LINE L2 -159 3113 2934 248 240 173 58 chr9 595382 595486 -117267141 - L1MC4 LINE L1 -2 8040 7925 300 27 0 0 chr9 595486 595523 -117267104 + (TG)n Simple_repeat Simple_repeat 2 38 0 720 201 178 169 chr9 595531 596204 -117266423 - L1MC4 LINE L1 -403 7639 6961 382 309 94 34 chr9 597259 597408 -117265219 + L2 LINE L2 2684 2841 -473 458 286 105 65 chr9 597455 597780 -117264847 + L2 LINE L2 2935 3272 0 1399 149 0 5 chr9 598191 598399 -117264228 + AluJo SINE Alu 84 290 -22 1944 109 47 0 chr9 599534 599809 -117262818 - AluSp SINE Alu -21 292 5 964 172 39 39 chr9 599886 600090 -117262537 - MER20 DNA MER1_type 0 219 16 459 234 53 0 chr9 600794 600888 -117261739 + L2 LINE L2 3186 3284 -29 203 147 0 0 chr9 600905 600939 -117261688 + (GA)n Simple_repeat Simple_repeat 2 35 0 2147 114 0 13 chr9 601403 601701 -117260926 - AluSx SINE Alu -18 294 1 2258 102 0 29 chr9 602109 602423 -117260204 - AluSx SINE Alu -7 305 1 911 285 32 21 chr9 602567 602851 -117259776 - MLT1J LTR MaLR -1 510 224 1863 157 0 38 chr9 603108 603427 -117259200 + AluJo SINE Alu 1 307 -5 305 206 32 0 chr9 603447 603510 -117259117 - L1ME4a LINE L1 -56 6065 6001 1984 94 0 0 chr9 603613 603868 -117258759 + AluSx SINE Alu 1 255 -57 2084 106 0 11 chr9 604024 604306 -117258321 - AluSq SINE Alu -30 283 5 22 0 0 0 chr9 604309 604331 -117258296 + AT_rich Low_complexity Low_complexity 1 22 0 292 221 91 65 chr9 604878 605032 -117257595 + L1ME4a LINE L1 5962 6119 -2 2208 92 10 16 chr9 608020 608325 -117254302 - AluSq SINE Alu -10 303 1 970 211 18 44 chr9 608404 608632 -117253995 + L1PA16 LINE L1 5942 6163 -3 237 310 25 30 chr9 608661 608745 -117253882 - MIR SINE MIR -67 141 92 2262 110 10 3 chr9 608745 609055 -117253572 + AluSx SINE Alu 1 312 0 237 310 25 30 chr9 609055 609114 -117253513 - MIR SINE MIR -116 92 34 797 169 0 8 chr9 612367 612491 -117250136 + FLAM_A SINE Alu 1 123 -10 507 312 69 13 chr9 612508 612739 -117249888 - L2 LINE L2 -18 3295 3052 1941 135 14 0 chr9 612771 613067 -117249560 - AluSx SINE Alu -12 300 1 251 256 136 5 chr9 614594 614739 -117247888 + MIR SINE MIR 28 256 -6 979 163 25 64 chr9 615188 615391 -117247236 + AluJo SINE Alu 87 281 -31 1728 163 17 3 chr9 615419 615720 -117246907 + AluJb SINE Alu 7 311 -1 23 33 0 0 chr9 616020 616050 -117246577 + AT_rich Low_complexity Low_complexity 1 30 0 240 337 36 60 chr9 616636 616708 -117245919 + MIR3 SINE MIR 17 89 -119 1857 161 10 6 chr9 616708 617019 -117245608 - AluJb SINE Alu 0 312 1 240 337 36 60 chr9 617019 617112 -117245515 + MIR3 SINE MIR 89 178 -30 2122 99 0 29 chr9 617363 617676 -117244951 - AluSg SINE Alu -6 304 1 23 0 0 0 chr9 618000 618023 -117244604 + AT_rich Low_complexity Low_complexity 1 23 0 625 125 0 118 chr9 618153 618289 -117244338 - FRAM SINE Alu -12 164 45 1339 193 7 43 chr9 618760 619065 -117243562 - AluJo SINE Alu -18 294 1 635 190 22 51 chr9 619067 619204 -117243423 - AluJo/FLAM SINE Alu -169 133 1 365 134 15 30 chr9 619411 619478 -117243149 - MER5B DNA MER1_type 0 178 113 3033 169 74 47 chr9 619478 620411 -117242216 + LTR8-int LTR ERV1 5043 6257 -6 1029 186 142 9 chr9 620421 620647 -117241980 + LTR8 LTR ERV1 1 256 -435 23 0 0 0 chr9 620662 620685 -117241942 + AT_rich Low_complexity Low_complexity 1 23 0 297 125 0 0 chr9 620723 620779 -117241848 + (TC)n Simple_repeat Simple_repeat 1 56 0 234 155 14 127 chr9 620803 620874 -117241753 + MER5B DNA MER1_type 116 178 0 190 260 20 0 chr9 621204 621254 -117241373 - MIR SINE MIR -11 251 201 602 232 49 32 chr9 621695 621880 -117240747 + L1ME2 LINE L1 5943 6130 -34 797 151 8 16 chr9 621909 622035 -117240592 + FRAM SINE Alu 21 145 -31 668 226 82 62 chr9 622109 622224 -117240403 + L1MC5 LINE L1 7489 7600 -361 1450 180 10 37 chr9 622224 622519 -117240108 + AluJb SINE Alu 5 291 -21 668 226 82 62 chr9 622519 622806 -117239821 + L1MC5 LINE L1 7600 7899 -62 2109 98 0 14 chr9 622925 623222 -117239405 + AluSx SINE Alu 1 293 -19 264 230 148 82 chr9 623570 623679 -117238948 + MIR3 SINE MIR 37 158 -50 1706 106 0 16 chr9 623679 623925 -117238702 + AluSx SINE Alu 60 301 -11 264 230 148 82 chr9 623925 623950 -117238677 + MIR3 SINE MIR 158 180 -28 301 319 35 9 chr9 624046 624159 -117238468 + MER5A DNA MER1_type 50 165 -24 2005 119 3 0 chr9 624766 625059 -117237568 + AluSx SINE Alu 1 294 -18 1864 136 3 17 chr9 625087 625389 -117237238 + AluSq SINE Alu 1 298 -15 316 319 176 32 chr9 625439 625655 -117236972 - L1ME4a LINE L1 -246 5875 5629 2064 100 21 3 chr9 625732 626023 -117236604 - AluSx SINE Alu -14 298 3 429 20 0 0 chr9 626090 626140 -117236487 + (TG)n Simple_repeat Simple_repeat 1 50 0 241 284 0 0 chr9 626157 626231 -117236396 - L1ME LINE L1 -205 5916 5843 5227 115 29 62 chr9 626258 626591 -117236036 + MER4D LTR ERV1 1 344 -559 1994 107 9 28 chr9 626591 626908 -117235719 - AluSx SINE Alu -1 311 1 5227 115 29 62 chr9 626908 627508 -117235119 + MER4D LTR ERV1 344 903 0 2059 112 0 3 chr9 628819 629106 -117233521 + AluSx SINE Alu 1 286 -26 1132 183 100 0 chr9 631951 632180 -117230447 + AluJo SINE Alu 40 291 -21 26 0 0 0 chr9 632205 632231 -117230396 + AT_rich Low_complexity Low_complexity 1 26 0 1874 135 26 13 chr9 632240 632543 -117230084 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr9 632768 632790 -117229837 + AT_rich Low_complexity Low_complexity 1 22 0 2105 101 0 0 chr9 632799 633085 -117229542 + AluSx SINE Alu 7 292 -20 991 163 180 85 chr9 633980 634121 -117228506 + MER2 DNA MER2_type 36 162 -183 1824 145 0 3 chr9 634121 634411 -117228216 + AluSx SINE Alu 1 289 -23 1865 74 0 8 chr9 634411 634668 -117227959 - AluY SINE Alu -55 256 1 991 163 180 85 chr9 634668 634808 -117227819 + MER2 DNA MER2_type 161 345 0 1615 142 42 21 chr9 634833 635121 -117227506 + AluJb SINE Alu 3 296 -16 500 266 97 7 chr9 636307 636461 -117226166 - MIR SINE MIR -75 187 20 194 133 67 22 chr9 637994 638039 -117224588 + L2 LINE L2 2677 2723 -591 1498 143 23 37 chr9 639735 639897 -117222730 - AluSx SINE Alu -16 296 138 2235 92 0 0 chr9 639897 640191 -117222436 - AluY SINE Alu -12 299 6 1498 143 23 37 chr9 640191 640328 -117222299 - AluSx SINE Alu -174 138 1 234 196 78 0 chr9 641764 641815 -117220812 - L1PA15-16 LINE L1 -6208 641 587 1628 151 36 4 chr9 641992 642271 -117220356 + AluJo SINE Alu 1 288 -24 2307 92 0 3 chr9 644869 645172 -117217455 - AluY SINE Alu -9 302 1 221 115 0 19 chr9 645723 645775 -117216852 + (GA)n Simple_repeat Simple_repeat 1 51 0 1635 186 20 0 chr9 646271 646567 -117216060 + AluJo SINE Alu 5 306 -6 713 180 0 43 chr9 646716 646855 -117215772 + FLAM_A SINE Alu 1 133 0 1419 129 126 16 chr9 647289 647567 -117215060 + AluSg SINE Alu 1 306 0 203 222 0 22 chr9 647577 647622 -117215005 - MER5A DNA MER1_type -108 81 38 646 226 97 0 chr9 649227 649422 -117213205 + L1ME3A LINE L1 5944 6157 -13 652 307 68 43 chr9 649616 650013 -117212614 + MLT1I LTR MaLR 3 409 0 664 181 22 14 chr9 650098 650236 -117212391 - MER105 DNA DNA -28 176 38 1065 190 16 0 chr9 650305 650489 -117212138 - MER5A DNA MER1_type -2 187 1 2273 100 0 0 chr9 650891 651192 -117211435 + AluSq SINE Alu 1 301 -12 2050 129 0 0 chr9 651781 652075 -117210552 - AluSx SINE Alu -17 295 2 1982 97 0 33 chr9 652296 652596 -117210031 + AluSx SINE Alu 1 290 -22 595 350 45 8 chr9 653151 653397 -117209230 - MLT1H LTR MaLR -273 276 22 1986 125 7 0 chr9 653798 654087 -117208540 - AluSx SINE Alu -21 291 1 2182 97 0 25 chr9 654894 655214 -117207413 - AluSx SINE Alu 0 312 1 2114 99 3 3 chr9 655488 655780 -117206847 - AluSg SINE Alu -15 295 4 197 273 13 39 chr9 655798 655875 -117206752 + L3 LINE CR1 1245 1319 -258 1977 122 7 7 chr9 656196 656499 -117206128 - AluSx SINE Alu -9 303 1 246 32 0 0 chr9 656629 656660 -117205967 + (TG)n Simple_repeat Simple_repeat 2 32 0 1013 177 74 5 chr9 656694 656897 -117205730 - AluJb SINE Alu -13 299 83 2061 189 16 2 chr9 657006 657430 -117205197 - L1MB4 LINE L1 0 6180 5751 1583 141 82 4 chr9 657445 657714 -117204913 - AluJb SINE Alu -22 290 1 665 254 78 20 chr9 657899 658143 -117204484 - MIR SINE MIR -3 259 2 1370 230 60 7 chr9 659262 659706 -117202921 - MLT2B1 LTR ERVL 0 520 1 323 305 29 0 chr9 660569 660674 -117201953 + L2 LINE L2 2560 2667 -647 2428 81 0 0 chr9 661563 661871 -117200756 + AluY SINE Alu 1 308 -3 1771 140 0 11 chr9 661913 662184 -117200443 + AluSx SINE Alu 1 268 -44 26 98 0 0 chr9 662215 662297 -117200330 + AT_rich Low_complexity Low_complexity 1 82 0 452 303 26 7 chr9 662761 662913 -117199714 + MIR SINE MIR 21 175 -87 758 136 0 0 chr9 663004 663114 -117199513 + AluSq/x SINE Alu 2 111 -202 4168 125 86 26 chr9 663116 663850 -117198777 + MER4E LTR ERV1 2 779 0 690 123 38 0 chr9 663850 663956 -117198671 + MER50 LTR ERV1 595 704 -30 30328 114 20 56 chr9 664880 671284 -117191343 + L1PA8 LINE L1 12 6172 0 2205 118 26 3 chr9 671441 671746 -117190881 + AluSx SINE Alu 1 312 0 261 0 0 0 chr9 671749 671778 -117190849 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 1823 109 13 63 chr9 671935 672237 -117190390 - AluSx SINE Alu 0 312 26 1775 135 60 0 chr9 672297 672564 -117190063 + AluSq SINE Alu 21 303 -10 1121 146 0 0 chr9 672732 672896 -117189731 - AluSq SINE Alu -15 298 135 2140 131 0 0 chr9 672898 673188 -117189439 - AluSx SINE Alu -22 290 1 2036 132 7 0 chr9 673260 673549 -117189078 + AluSp SINE Alu 9 299 -14 264 30 0 0 chr9 673551 673584 -117189043 + (TA)n Simple_repeat Simple_repeat 1 33 0 656 209 67 53 chr9 673597 673757 -117188870 + MLT1E LTR MaLR 1 166 -427 1726 148 36 43 chr9 673757 674061 -117188566 - AluSx SINE Alu -10 302 1 656 209 67 53 chr9 674061 674125 -117188502 + MLT1E LTR MaLR 166 228 -365 1341 290 52 44 chr9 674148 674690 -117187937 + L1MA6 LINE L1 160 705 -6144 240 35 0 0 chr9 675016 675045 -117187582 + (CA)n Simple_repeat Simple_repeat 1 29 0 4016 219 57 26 chr9 675064 675704 -117186923 + L1MA6 LINE L1 1383 2002 -4847 1711 184 0 0 chr9 675704 675971 -117186656 + AluJb SINE Alu 1 267 -45 4016 219 57 26 chr9 675971 676161 -117186466 + L1MA6 LINE L1 2002 2185 -4664 1451 197 49 21 chr9 676161 676445 -117186182 + AluJo SINE Alu 1 292 -20 4016 219 57 26 chr9 676445 676752 -117185875 + L1MA6 LINE L1 2185 2556 -4293 12058 169 52 26 chr9 676762 678145 -117184482 + L1MA6 LINE L1 3434 4780 -2222 8892 50 8 2 chr9 678145 679208 -117183419 + MER11C LTR ERVK 1 1070 -1 12058 169 52 26 chr9 679208 679846 -117182781 + L1MA6 LINE L1 4780 5400 -1602 2196 124 0 7 chr9 679846 680144 -117182483 - AluSx SINE Alu -12 300 5 12058 169 52 26 chr9 680144 680588 -117182039 + L1MA6 LINE L1 5400 5831 -1171 2158 102 0 11 chr9 680588 680872 -117181755 - AluSx SINE Alu -31 281 1 12058 169 52 26 chr9 680872 681764 -117180863 + L1MA6 LINE L1 5831 7002 0 1316 150 184 83 chr9 681775 682182 -117180445 - LTR47A LTR ERVL 0 452 5 1155 229 62 13 chr9 682291 682597 -117180030 - L1MA6 LINE L1 -13 6287 5967 3375 168 66 138 chr9 682683 683066 -117179561 - MER21A LTR ERV1 -16 915 506 2347 102 0 7 chr9 683066 683371 -117179256 + AluSx SINE Alu 1 303 -9 3375 168 66 138 chr9 683371 683958 -117178669 - MER21A LTR ERV1 -425 506 15 1428 248 18 33 chr9 684541 684868 -117177759 + MLT1I LTR MaLR 9 330 -79 1236 220 40 24 chr9 684868 685164 -117177463 + AluJb SINE Alu 1 301 -11 1428 248 18 33 chr9 685164 685235 -117177392 + MLT1I LTR MaLR 330 401 -8 1596 174 32 76 chr9 685541 685765 -117176862 - MLT1B LTR MaLR 0 390 191 2122 109 24 0 chr9 685765 686058 -117176569 - AluSq SINE Alu -13 300 1 1596 174 32 76 chr9 686058 686241 -117176386 - MLT1B LTR MaLR -199 191 1 347 303 103 0 chr9 686843 686998 -117175629 + MIR SINE MIR 89 259 -3 2012 136 18 0 chr9 687443 687729 -117174898 + AluSc SINE Alu 1 291 -18 1921 172 13 0 chr9 687737 688067 -117174560 + AluJb SINE Alu 1 334 0 1545 158 71 128 chr9 688330 688694 -117173933 - MLT1C LTR MaLR -2 465 135 1850 137 34 10 chr9 688694 688987 -117173640 - AluJb SINE Alu -12 300 1 1545 158 71 128 chr9 688987 689115 -117173512 - MLT1C LTR MaLR -332 135 1 372 252 72 14 chr9 689228 689367 -117173260 - MIR SINE MIR -18 244 98 2181 98 3 20 chr9 689577 689874 -117172753 - AluSx SINE Alu -20 292 1 2300 84 3 0 chr9 690303 690589 -117172038 - AluSg SINE Alu -23 287 1 216 320 68 10 chr9 690793 691007 -117171620 - L2 LINE L2 -74 3198 3002 1512 147 9 0 chr9 691742 691960 -117170667 - AluJb SINE Alu -19 293 74 279 203 16 31 chr9 691960 692015 -117170612 + LTR67 LTR ERVL 494 549 -8 371 232 11 17 chr9 692120 692213 -117170414 - AluS SINE Alu -228 75 1 1140 166 5 0 chr9 692480 692667 -117169960 - MER5A DNA MER1_type 0 189 2 521 219 80 22 chr9 692712 692849 -117169778 + LTR67 LTR ERVL 405 549 -8 2313 104 0 16 chr9 693303 693619 -117169008 - AluSq SINE Alu -2 311 1 1872 109 106 0 chr9 694015 694280 -117168347 - AluSg SINE Alu -17 293 1 373 202 326 8 chr9 694443 694572 -117168055 + MER5B DNA MER1_type 5 174 -4 300 207 49 0 chr9 694580 694672 -117167955 - MIR SINE MIR -73 135 32 1163 186 0 69 chr9 694992 695176 -117167451 - AluJo SINE Alu -23 289 94 2393 88 0 0 chr9 695176 695471 -117167156 - AluSg SINE Alu -15 295 1 297 0 0 0 chr9 695471 695504 -117167123 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1163 186 0 69 chr9 695504 695565 -117167062 - AluJo SINE Alu -216 96 60 1900 136 11 7 chr9 695694 695981 -117166646 + AluSg SINE Alu 1 288 -22 2603 51 0 10 chr9 696016 696330 -117166297 - AluY SINE Alu 0 311 1 428 239 162 9 chr9 696391 696568 -117166059 - L1MC4a LINE L1 -219 5902 5708 2259 112 3 0 chr9 696571 696875 -117165752 + AluSx SINE Alu 1 305 -7 2558 48 0 0 chr9 697315 697610 -117165017 - AluY SINE Alu -16 295 1 338 266 70 8 chr9 697661 697789 -117164838 + L1ME4a LINE L1 5548 5683 -438 546 309 85 0 chr9 697789 698012 -117164615 + MIR SINE MIR 20 261 -1 21 36 0 0 chr9 698130 698158 -117164469 + AT_rich Low_complexity Low_complexity 1 28 0 1857 159 29 35 chr9 698236 698538 -117164089 - MER2 DNA MER2_type 0 344 43 2261 98 0 16 chr9 698538 698843 -117163784 + AluSx SINE Alu 1 300 -12 1857 159 29 35 chr9 698843 698886 -117163741 - MER2 DNA MER2_type -301 43 1 1753 144 4 4 chr9 699357 699621 -117163006 + AluSx SINE Alu 39 302 -10 1560 156 64 14 chr9 701712 701995 -117160632 - MLT1C LTR MaLR 0 467 171 2226 113 0 10 chr9 702010 702321 -117160306 - AluSx SINE Alu -4 308 1 283 254 56 16 chr9 702370 702496 -117160131 + L1ME4a LINE L1 5758 5888 -233 552 320 135 24 chr9 702571 703030 -117159597 + L2 LINE L2 2804 3313 0 2322 87 10 3 chr9 703040 703351 -117159276 + AluSq SINE Alu 1 313 0 1008 156 12 0 chr9 704111 704271 -117158356 - AluSg/x SINE Alu -8 304 143 434 154 121 0 chr9 704380 704457 -117158170 + MLT1A1 LTR MaLR 1 92 -273 2255 109 0 7 chr9 704457 704759 -117157868 + AluSq SINE Alu 1 300 -13 434 154 121 0 chr9 704759 704772 -117157855 + MLT1A1 LTR MaLR 92 102 -263 367 127 18 0 chr9 704805 704860 -117157767 + MSTD LTR MaLR 341 396 0 217 173 19 0 chr9 705049 705101 -117157526 + A-rich Low_complexity Low_complexity 6 58 0 618 221 128 0 chr9 705540 705735 -117156892 - MIR SINE MIR -35 227 8 1371 275 57 15 chr9 705838 706310 -117156317 + LTR33 LTR ERVL 24 515 -6 446 252 122 0 chr9 706653 706800 -117155827 + MIR SINE MIR 49 213 -49 1463 102 13 35 chr9 706807 707033 -117155594 + AluSc SINE Alu 81 301 -8 991 9 58 21 chr9 707109 707551 -117155076 + (TG)n Simple_repeat Simple_repeat 1 458 0 608 198 27 0 chr9 707591 707702 -117154925 + MER106B DNA MER1_type 42 155 -904 21 36 0 0 chr9 707705 707733 -117154894 + AT_rich Low_complexity Low_complexity 1 28 0 362 179 0 0 chr9 707812 707868 -117154759 + MLT1A2 LTR MaLR 1 56 -318 2580 59 0 0 chr9 707869 708172 -117154455 + AluSg SINE Alu 1 303 -7 803 213 63 19 chr9 708172 708379 -117154248 + MLT1A2 LTR MaLR 159 374 0 1629 170 21 24 chr9 708472 708760 -117153867 + AluJo SINE Alu 11 297 -15 1987 143 3 19 chr9 709307 709614 -117153013 - AluSx SINE Alu -10 302 1 254 323 104 53 chr9 709833 710170 -117152457 + L2 LINE L2 2945 3298 -15 198 103 0 0 chr9 710286 710315 -117152312 + (A)n Simple_repeat Simple_repeat 1 29 0 1829 284 59 38 chr9 710817 711525 -117151102 + L1MEd LINE L1 1 723 -5396 2189 127 0 19 chr9 711617 711933 -117150694 + AluSx SINE Alu 1 310 -2 516 130 0 0 chr9 711858 711935 -117150692 + Alu SINE Alu 236 312 0 2188 119 3 3 chr9 712065 712375 -117150252 + AluSx SINE Alu 1 310 -2 478 291 179 14 chr9 712533 712756 -117149871 + MIR SINE MIR 3 262 0 1517 185 35 3 chr9 712888 713175 -117149452 + AluJo SINE Alu 2 297 -15 2296 183 71 54 chr9 713235 713381 -117149246 + L1MD1 LINE L1 5061 5203 -1039 1675 167 0 26 chr9 713381 713687 -117148940 + AluJo SINE Alu 1 298 -14 2296 183 71 54 chr9 713687 713766 -117148861 + L1MD1 LINE L1 5203 5279 -963 2082 121 0 16 chr9 713766 714079 -117148548 - AluSx SINE Alu -4 308 1 1876 132 10 3 chr9 714081 714370 -117148257 - AluJb SINE Alu -9 303 13 2296 183 71 54 chr9 714370 714676 -117147951 + L1MD1 LINE L1 5279 5578 -664 2236 109 0 0 chr9 714676 714989 -117147638 - AluSq SINE Alu 0 313 1 2296 183 71 54 chr9 714989 715420 -117147207 + L1MD1 LINE L1 5578 6070 -172 1158 243 28 12 chr9 715210 715535 -117147092 + L1MB8 LINE L1 5843 6172 -6 * 1505 178 7 17 chr9 715551 715838 -117146789 + AluJo SINE Alu 11 294 -18 2185 98 0 0 chr9 715838 716124 -117146503 + AluSg SINE Alu 1 286 -24 2187 76 26 7 chr9 716138 716429 -117146198 + AluSg1 SINE Alu 1 300 -9 270 115 0 0 chr9 716429 716481 -117146146 + (TA)n Simple_repeat Simple_repeat 2 53 0 2187 76 26 7 chr9 716481 716492 -117146135 + AluSg1 SINE Alu 300 309 0 263 286 118 17 chr9 716827 716946 -117145681 - L2 LINE L2 -21 3251 3121 482 250 24 18 chr9 717744 717889 -117144738 + L1ME3 LINE L1 5998 6146 -16 1848 116 61 0 chr9 717889 718166 -117144461 - AluSx SINE Alu -18 294 1 482 250 24 18 chr9 718166 718184 -117144443 + L1ME3 LINE L1 6146 6162 0 644 130 43 9 chr9 718195 718310 -117144317 + L1MB3 LINE L1 6063 6181 -2 910 174 6 6 chr9 718368 718529 -117144098 + AluJb SINE Alu 1 161 -151 207 0 0 0 chr9 718554 718577 -117144050 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 503 300 62 12 chr9 718966 719126 -117143501 - MIR3 SINE MIR -9 199 32 1915 148 7 0 chr9 719223 719533 -117143094 - AluJo SINE Alu 0 312 1 2252 69 0 0 chr9 719568 719881 -117142746 - AluY SINE Alu 0 313 1 1492 191 68 3 chr9 719886 720195 -117142432 - L1MB8 LINE L1 -11 6167 5839 273 228 0 0 chr9 720248 720327 -117142300 + GA-rich Low_complexity Low_complexity 3 81 0 335 307 114 55 chr9 720383 720585 -117142042 - MIR SINE MIR -29 233 20 628 243 80 57 chr9 720747 721048 -117141579 + L1MC4a LINE L1 5697 6004 -1804 1996 136 3 0 chr9 721058 721366 -117141261 + AluSx SINE Alu 1 309 -3 194 264 28 42 chr9 721366 721438 -117141189 - L2 LINE L2 -20 3252 3182 1040 146 6 0 chr9 721475 721640 -117140987 - FRAM SINE Alu -15 161 1 252 161 0 61 chr9 722015 722209 -117140418 + AluJo SINE Alu 38 300 -2 436 280 84 0 chr9 722214 722357 -117140270 + MIR SINE MIR 47 201 -61 1778 174 7 0 chr9 722387 722691 -117139936 + AluJb SINE Alu 1 306 -6 953 197 55 24 chr9 723239 723493 -117139134 - MER58B DNA MER1_type 0 341 80 1334 126 37 5 chr9 723494 723709 -117138918 + AluJb SINE Alu 79 300 -12 1319 191 20 20 chr9 723712 724016 -117138611 + AluJb SINE Alu 1 304 -8 754 166 45 85 chr9 724128 724351 -117138276 - AluJo SINE Alu -11 301 88 2124 95 10 3 chr9 724351 724657 -117137970 - AluSx SINE Alu -4 308 1 449 140 40 30 chr9 724716 724816 -117137811 + MER53 DNA DNA 1 101 -88 245 363 0 7 chr9 724878 725024 -117137603 + C-rich Low_complexity Low_complexity 2 146 0 1471 132 8 31 chr9 726000 726257 -117136370 + AluSx SINE Alu 32 282 -30 2208 97 0 0 chr9 726899 727198 -117135429 + AluSc SINE Alu 1 299 -10 2094 117 0 0 chr9 727206 727505 -117135122 + AluSx SINE Alu 1 299 -13 2015 117 0 3 chr9 727540 727845 -117134782 + AluSx SINE Alu 3 306 0 1277 156 5 9 chr9 727862 728086 -117134541 + AluJb SINE Alu 1 223 -89 1795 57 0 4 chr9 728088 728315 -117134312 - AluY SINE Alu -85 226 1 1898 121 47 13 chr9 728372 728537 -117134090 - AluSx SINE Alu 0 312 131 1911 101 21 21 chr9 728537 728849 -117133778 - AluSx SINE Alu 0 312 2 1898 121 47 13 chr9 728849 728981 -117133646 - AluSx SINE Alu -181 131 5 2059 93 4 0 chr9 729143 729459 -117133168 + AluSg SINE Alu 1 317 0 2240 80 7 7 chr9 729463 729764 -117132863 + AluSc SINE Alu 1 301 -8 2417 37 0 7 chr9 729952 730247 -117132380 + AluY SINE Alu 6 298 -13 2162 96 6 10 chr9 730715 731028 -117131599 + AluSp SINE Alu 1 312 -1 794 313 64 0 chr9 731051 731284 -117131343 - MIR SINE MIR 0 262 15 331 262 121 56 chr9 731683 731929 -117130698 + L2 LINE L2 2735 2998 -274 763 214 26 0 chr9 732431 732585 -117130042 - MIR SINE MIR -26 236 79 1693 97 0 4 chr9 732699 732937 -117129690 + AluSq SINE Alu 1 237 -76 834 141 0 15 chr9 732937 733066 -117129561 + AluSg/x SINE Alu 168 294 -18 3210 176 71 69 chr9 733238 733379 -117129248 - L1MB7 LINE L1 -5 6179 6040 309 26 0 0 chr9 733379 733417 -117129210 + (TTTA)n Simple_repeat Simple_repeat 1 38 0 2054 110 7 3 chr9 733420 733711 -117128916 - AluSc SINE Alu -17 292 1 1052 156 0 0 chr9 733714 733874 -117128753 - FRAM SINE Alu -6 160 1 3210 176 71 69 chr9 733874 734198 -117128429 - L1MB7 LINE L1 -146 6038 5716 2025 92 14 17 chr9 734198 734334 -117128293 + AluSq SINE Alu 1 136 -177 2244 94 3 0 chr9 734334 734633 -117127994 + AluSp SINE Alu 1 300 -13 2025 92 14 17 chr9 734633 734790 -117127837 + AluSq SINE Alu 136 293 -20 3210 176 71 69 chr9 734790 735111 -117127516 - L1MB7 LINE L1 -468 5716 5397 1712 159 28 0 chr9 735111 735400 -117127227 - AluJo SINE Alu -15 297 1 3210 176 71 69 chr9 735400 735561 -117127066 - L1MB7 LINE L1 -787 5397 5238 2090 125 3 0 chr9 735561 735873 -117126754 - AluSq SINE Alu 0 313 1 3210 176 71 69 chr9 735873 735964 -117126663 - L1MB7 LINE L1 -946 5238 5117 1918 136 3 3 chr9 735964 736266 -117126361 - AluSx SINE Alu -10 302 1 3210 176 71 69 chr9 736266 736311 -117126316 - L1MB7 LINE L1 -1067 5117 5074 2094 113 3 0 chr9 736511 736803 -117125824 - AluSx SINE Alu -17 295 3 2090 112 0 3 chr9 736805 737100 -117125527 - AluSg SINE Alu -16 294 1 2076 103 3 7 chr9 737102 737402 -117125225 - AluSq SINE Alu -14 299 1 1523 207 0 7 chr9 737713 737851 -117124776 + AluJo SINE Alu 1 138 -174 2300 74 0 0 chr9 737851 738147 -117124480 + AluY SINE Alu 1 296 -15 1523 207 0 7 chr9 738147 738312 -117124315 + AluJo SINE Alu 138 302 -10 396 0 0 0 chr9 739126 739170 -117123457 + (TG)n Simple_repeat Simple_repeat 2 45 0 405 139 93 0 chr9 739171 739257 -117123370 - L1ME2 LINE L1 -12 6152 6059 2365 69 0 3 chr9 740632 740936 -117121691 - AluSx SINE Alu -8 304 2 27 29 0 0 chr9 742952 742986 -117119641 + AT_rich Low_complexity Low_complexity 1 34 0 2355 80 0 6 chr9 743109 743423 -117119204 - AluSx SINE Alu 0 312 1 2006 124 7 0 chr9 743610 743909 -117118718 - AluSx SINE Alu -11 301 1 2041 113 7 10 chr9 744425 744734 -117117893 - AluSx SINE Alu -4 308 1 885 194 0 0 chr9 744981 745146 -117117481 - FRAM SINE Alu -11 165 1 332 224 116 68 chr9 745177 745324 -117117303 + MER5A DNA MER1_type 9 162 -27 183 237 17 51 chr9 745791 745850 -117116777 - MIR3 SINE MIR -18 190 134 795 234 66 5 chr9 746191 746388 -117116239 - MER3 DNA MER1_type 0 209 1 357 264 28 38 chr9 746619 746725 -117115902 + MIR3 SINE MIR 69 173 -35 2210 119 0 3 chr9 746945 747256 -117115371 - AluSx SINE Alu -2 310 1 493 289 76 25 chr9 747448 747645 -117114982 - MIR SINE MIR -54 208 2 2063 93 21 3 chr9 748231 748520 -117114107 - AluSp SINE Alu -19 294 1 2315 104 0 0 chr9 749148 749457 -117113170 + AluSx SINE Alu 1 309 -3 2082 128 3 0 chr9 749635 749939 -117112688 - AluSx SINE Alu -7 305 1 2051 100 17 0 chr9 750339 750638 -117111989 - AluSx SINE Alu -8 304 1 1681 153 23 17 chr9 751488 751788 -117110839 - L1MC1 LINE L1 -16 6317 6016 33 25 0 0 chr9 751837 751877 -117110750 + AT_rich Low_complexity Low_complexity 1 40 0 1454 140 21 103 chr9 751877 752206 -117110421 - AluYb8 SINE Alu -16 302 1 1484 154 3 55 chr9 752207 752499 -117110128 - AluJo SINE Alu -22 290 14 964 144 0 20 chr9 752514 752667 -117109960 - FRAM SINE Alu -11 165 16 1357 141 14 0 chr9 752691 752904 -117109723 - AluSg/x SINE Alu -15 295 80 2354 58 0 7 chr9 753174 753468 -117109159 - AluY SINE Alu -19 292 1 295 297 123 22 chr9 753755 753893 -117108734 + L2 LINE L2 3162 3313 0 1633 159 10 7 chr9 754025 754320 -117108307 - AluJo SINE Alu -16 296 1 2352 72 0 0 chr9 754326 754616 -117108011 - AluSx SINE Alu -20 292 3 2608 196 77 15 chr9 754666 755273 -117107354 - L1MB7 LINE L1 -20 6164 5520 1995 110 28 0 chr9 755434 755716 -117106911 + AluSx SINE Alu 1 290 -22 190 116 47 0 chr9 755716 755759 -117106868 + (TA)n Simple_repeat Simple_repeat 1 45 0 4109 31 0 0 chr9 756027 756506 -117106121 - L1PA4 LINE L1 0 6155 5677 23 33 0 0 chr9 756914 756944 -117105683 + AT_rich Low_complexity Low_complexity 1 30 0 963 147 47 47 chr9 756947 756993 -117105634 - L1MB4 LINE L1 0 6180 6135 2029 90 75 0 chr9 756993 757272 -117105355 + AluSq SINE Alu 1 300 -13 219 36 0 0 chr9 757272 757300 -117105327 + (TA)n Simple_repeat Simple_repeat 2 29 0 963 147 47 47 chr9 757300 757443 -117105184 - L1MB4 LINE L1 -43 6137 5990 2305 77 0 13 chr9 758420 758732 -117103895 + AluSx SINE Alu 5 312 0 1031 248 74 60 chr9 758889 759321 -117103306 - L2 LINE L2 -1 3312 2875 9401 57 12 81 chr9 759457 760904 -117101723 - SVA Other Other 0 1386 40 240 35 0 0 chr9 760913 760942 -117101685 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 1900 221 72 70 chr9 761242 761436 -117101191 + MLT1E2 LTR MaLR 2 194 -432 1573 181 7 16 chr9 761436 761739 -117100888 + AluJo SINE Alu 3 302 -10 1900 221 72 70 chr9 761739 762168 -117100459 + MLT1E2 LTR MaLR 194 626 0 508 190 60 9 chr9 762172 762288 -117100339 - L1MB7 LINE L1 -2374 5434 5313 286 313 55 16 chr9 762373 762501 -117100126 - L2 LINE L2 -1099 2215 2083 1891 119 51 0 chr9 762599 762894 -117099733 - AluSx SINE Alu -2 310 1 2443 67 0 7 chr9 762901 763198 -117099429 - AluY SINE Alu -13 298 4 271 285 97 24 chr9 763653 763802 -117098825 + MIR SINE MIR 18 185 -64 2396 98 0 0 chr9 764283 764588 -117098039 + AluSx SINE Alu 1 305 -7 468 295 109 19 chr9 765876 766086 -117096541 - MIR SINE MIR -12 250 22 2007 125 17 3 chr9 766390 766679 -117095948 - AluJb SINE Alu -19 293 1 1893 175 0 3 chr9 767129 767438 -117095189 + AluJb SINE Alu 1 308 -4 2299 91 0 3 chr9 768518 768830 -117093797 + AluSq SINE Alu 2 312 0 1673 163 31 17 chr9 769111 769405 -117093222 - AluJb SINE Alu -10 302 5 1536 157 48 11 chr9 769459 769727 -117092900 - AluJb SINE Alu -34 278 1 2327 57 3 30 chr9 769740 770041 -117092586 - AluY SINE Alu -18 293 1 1200 45 0 0 chr9 770041 770175 -117092452 - AluY SINE Alu -177 134 1 2310 199 127 16 chr9 770420 770472 -117092155 - L1MB7 LINE L1 0 6184 6139 2310 79 0 3 chr9 770472 770762 -117091865 - AluSg SINE Alu -21 289 1 2310 199 127 16 chr9 770762 771291 -117091336 - L1MB7 LINE L1 -45 6139 5538 1049 157 47 5 chr9 771314 771505 -117091122 - MLT2B3 LTR ERVL -355 199 1 781 178 16 26 chr9 771505 771696 -117090931 - L1MB7 LINE L1 -717 5467 5279 2283 81 0 42 chr9 771712 772020 -117090607 - AluSq SINE Alu -18 295 1 196 289 125 20 chr9 772319 772471 -117090156 + L3b LINE CR1 1179 1346 -237 2441 81 0 10 chr9 773203 773511 -117089116 - AluY SINE Alu -6 305 1 250 140 53 0 chr9 774164 774221 -117088406 + (TATG)n Simple_repeat Simple_repeat 3 62 0 1696 177 7 10 chr9 774930 775229 -117087398 - AluJo SINE Alu -12 300 3 293 203 76 0 chr9 777151 777230 -117085397 - MIR SINE MIR 0 262 178 5078 197 63 79 chr9 777576 778846 -117083781 - Charlie1a DNA MER1_type -1311 1450 206 2340 110 7 0 chr9 778846 779155 -117083472 + AluSx SINE Alu 1 311 -1 5078 197 63 79 chr9 779155 779358 -117083269 - Charlie1a DNA MER1_type -2555 206 1 285 289 0 25 chr9 779436 779557 -117083070 - MER5B DNA MER1_type -60 118 1 2267 100 6 10 chr9 781162 781473 -117081154 - AluSq SINE Alu -3 310 1 1851 136 17 10 chr9 781913 782208 -117080419 + AluJo SINE Alu 3 299 -13 2280 93 3 13 chr9 783090 783390 -117079237 + AluSx SINE Alu 1 297 -15 3981 163 35 49 chr9 783431 784227 -117078400 - LTR1 LTR ERV1 0 785 1 2108 110 13 10 chr9 784648 784957 -117077670 - AluSx SINE Alu -2 310 1 24 32 0 0 chr9 785071 785102 -117077525 + AT_rich Low_complexity Low_complexity 1 31 0 1069 107 6 47 chr9 785442 785611 -117077016 + AluSq SINE Alu 133 294 -19 241 180 0 20 chr9 786482 786532 -117076095 + L2 LINE L2 3263 3311 -2 1841 143 27 7 chr9 786701 787001 -117075626 - AluJb SINE Alu -6 306 1 795 189 16 63 chr9 787214 787246 -117075381 - MER5A DNA MER1_type -7 182 150 888 133 0 15 chr9 787246 787381 -117075246 + FLAM_C SINE Alu 1 133 0 795 189 16 63 chr9 787381 787539 -117075088 - MER5A DNA MER1_type -39 150 1 814 138 57 13 chr9 788488 788647 -117073980 - FRAM SINE Alu 0 166 1 2117 107 0 49 chr9 789105 789432 -117073195 - AluSx SINE Alu -1 311 1 895 147 0 14 chr9 789459 789602 -117073025 + FLAM_C SINE Alu 1 141 -2 1660 141 0 16 chr9 789622 789877 -117072750 + AluSx SINE Alu 57 307 -5 2143 111 0 32 chr9 789910 790225 -117072402 - AluY SINE Alu -6 305 1 218 200 150 0 chr9 790295 790355 -117072272 - L2 LINE L2 -9 3263 3195 427 257 46 4 chr9 791661 791811 -117070816 + MER58A DNA MER1_type 1 216 -8 315 303 0 10 chr9 792641 792740 -117069887 + (CA)n Simple_repeat Simple_repeat 1 98 0 222 62 0 0 chr9 793188 793220 -117069407 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 2205 104 0 3 chr9 793228 793516 -117069111 - AluSx SINE Alu -25 287 1 216 268 94 71 chr9 793672 793799 -117068828 + L3 LINE CR1 1445 1574 -3 1649 137 13 48 chr9 793923 794203 -117068424 - L1MA9 LINE L1 -1 6311 6042 2395 83 0 0 chr9 794203 794504 -117068123 - AluSc SINE Alu -8 301 1 1649 137 13 48 chr9 794504 794538 -117068089 - L1MA9 LINE L1 -270 6042 6008 1189 102 60 0 chr9 794682 794848 -117067779 - AluSg/x SINE Alu -4 306 131 350 195 78 0 chr9 794848 794925 -117067702 - L1MA9 LINE L1 -296 6016 5934 2344 98 0 0 chr9 794934 795229 -117067398 + AluSg SINE Alu 1 295 -15 2020 88 0 22 chr9 795492 795802 -117066825 - AluSc SINE Alu 0 319 16 660 131 0 0 chr9 795912 796011 -117066616 + FRAM SINE Alu 66 164 -12 2211 118 3 13 chr9 796505 796820 -117065807 - AluSx SINE Alu 0 312 1 1372 133 90 8 chr9 797260 797516 -117065111 - L1 LINE L1 -1577 4569 4293 1648 161 20 43 chr9 799088 799393 -117063234 - AluJo SINE Alu -14 298 1 1860 165 3 19 chr9 799402 799718 -117062909 - AluJb SINE Alu -1 311 1 2440 84 0 0 chr9 799720 800028 -117062599 - AluSx SINE Alu -4 308 1 2391 75 10 0 chr9 800313 800606 -117062021 - AluSx SINE Alu -11 301 6 2175 121 0 7 chr9 800893 801190 -117061437 - AluSx SINE Alu -17 295 1 194 158 0 0 chr9 802965 803003 -117059624 - L2 LINE L2 -20 3252 3215 2321 84 10 0 chr9 803064 803360 -117059267 + AluSp SINE Alu 1 299 -14 543 247 102 24 chr9 803464 803630 -117058997 - MER97a DNA MER1_type? -715 179 1 327 25 0 0 chr9 803876 803916 -117058711 + (TG)n Simple_repeat Simple_repeat 1 40 0 256 283 34 0 chr9 804188 804296 -117058331 - MIR SINE MIR -62 146 31 294 50 0 0 chr9 804422 804462 -117058165 + (CA)n Simple_repeat Simple_repeat 2 41 0 388 256 62 74 chr9 806013 806189 -117056438 + MER112 DNA MER1_type 3 176 -84 261 0 0 0 chr9 806231 806260 -117056367 + (TG)n Simple_repeat Simple_repeat 2 30 0 1804 155 7 17 chr9 806572 806863 -117055764 + AluJo SINE Alu 1 288 -24 1734 180 7 7 chr9 808110 808415 -117054212 - AluJb SINE Alu -7 305 1 702 260 18 27 chr9 809496 809715 -117052912 - MER20 DNA MER1_type -2 217 1 2355 98 7 3 chr9 809882 810189 -117052438 - AluSx SINE Alu 0 312 5 1673 154 44 65 chr9 810355 810738 -117051889 - THE1C LTR MaLR 0 375 1 549 220 54 30 chr9 811164 811332 -117051295 + MER5B DNA MER1_type 1 172 -6 348 137 61 34 chr9 811348 811474 -117051153 + MER58 DNA MER1_type 169 2420 0 1894 135 11 0 chr9 812015 812297 -117050330 + AluSx SINE Alu 1 285 -27 2572 66 0 0 chr9 812694 812998 -117049629 + AluY SINE Alu 1 304 -7 27 29 0 0 chr9 814113 814147 -117048480 + AT_rich Low_complexity Low_complexity 1 34 0 2313 87 0 3 chr9 814147 814434 -117048193 - AluY SINE Alu -25 286 1 199 328 52 17 chr9 814454 814570 -117048057 - MIR SINE MIR -79 183 64 1742 178 0 17 chr9 814775 815073 -117047554 - AluJo SINE Alu -19 293 1 3605 246 51 54 chr9 817927 819251 -117043376 - L2 LINE L2 -457 2857 1537 396 220 220 0 chr9 819231 819404 -117043223 + MER5C DNA MER1_type 11 221 -103 * 3653 145 73 16 chr9 819409 820056 -117042571 - L1MB5 LINE L1 0 6174 5491 1136 130 52 42 chr9 820077 820269 -117042358 + AluJo SINE Alu 85 278 -34 1639 176 8 0 chr9 820313 820580 -117042047 - AluJb SINE Alu -43 269 1 448 195 0 76 chr9 820600 820718 -117041909 + MER5C DNA MER1_type 215 323 -1 240 190 103 0 chr9 820720 820778 -117041849 - L2 LINE L2 -1750 1564 1501 229 253 67 67 chr9 821553 821628 -117040999 - MIR3 SINE MIR -18 190 116 2185 120 0 0 chr9 822472 822773 -117039854 - AluSx SINE Alu -11 301 1 207 211 0 0 chr9 824041 824079 -117038548 + T-rich Low_complexity Low_complexity 3 40 0 309 224 214 0 chr9 824108 824206 -117038421 - MIR SINE MIR -34 228 110 279 0 0 0 chr9 825089 825120 -117037507 + (GA)n Simple_repeat Simple_repeat 2 32 0 596 166 103 34 chr9 827104 827230 -117035397 - MER53 DNA DNA -1 188 72 350 0 44 0 chr9 827230 827275 -117035352 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1858 134 0 4 chr9 827278 827540 -117035087 - AluSx SINE Alu -51 261 1 596 166 103 34 chr9 827540 827584 -117035043 - MER53 DNA DNA -118 71 2 640 134 0 10 chr9 827701 827798 -117034829 - FLAM_A SINE Alu -12 130 35 1375 153 27 135 chr9 828617 828818 -117033809 - AluJo SINE Alu -14 298 146 2409 69 10 0 chr9 828818 829109 -117033518 - AluY SINE Alu -17 294 1 1375 153 27 135 chr9 829109 829241 -117033386 - AluJo SINE Alu -166 146 1 2208 163 39 5 chr9 829250 829636 -117032991 - L1MB7 LINE L1 0 6184 5786 1394 166 101 93 chr9 829874 830259 -117032368 - MLT1B LTR MaLR -2 388 1 180 0 0 0 chr9 830568 830588 -117032039 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 1266 217 50 34 chr9 830968 831290 -117031337 - MER21B LTR ERV1 -124 739 413 2282 94 0 13 chr9 831316 831614 -117031013 - AluSx SINE Alu -14 298 5 878 210 24 54 chr9 831617 831822 -117030805 - MER21B LTR ERV1 -664 199 1 755 235 96 0 chr9 832013 832200 -117030427 - MER3 DNA MER1_type 0 209 5 623 204 0 72 chr9 832602 832783 -117029844 - L1MB7 LINE L1 -893 5253 5086 1009 169 0 12 chr9 832785 832945 -117029682 + FRAM SINE Alu 1 157 -19 919 165 20 42 chr9 832964 833178 -117029449 - L1M4 LINE L1 -1055 5091 4867 2337 86 3 7 chr9 834871 835172 -117027455 + AluSq SINE Alu 1 300 -13 5255 189 57 13 chr9 835215 837302 -117025325 - L1MB4 LINE L1 0 6180 3989 2605 176 6 6 chr9 838279 838762 -117023865 + L1M3 LINE L1 5310 5792 -388 * 4310 164 55 37 chr9 838755 840127 -117022500 + L1MB3 LINE L1 4787 6183 0 600 308 50 32 chr9 840147 840649 -117021978 - L1MB4 LINE L1 -2203 3943 3416 1865 169 3 0 chr9 840672 840974 -117021653 - AluJb SINE Alu -9 303 1 181 339 62 0 chr9 841309 841374 -117021253 - MIR SINE MIR -162 100 32 413 274 58 58 chr9 842363 842622 -117020005 + MIR SINE MIR 2 260 -2 2075 120 0 14 chr9 843541 843857 -117018770 - AluSx SINE Alu 0 312 1 367 290 166 50 chr9 844323 844788 -117017839 - L1MC4a LINE L1 -1877 5931 5413 1557 122 32 5 chr9 845554 845775 -117016852 - MER30 DNA MER1_type 0 230 4 184 234 78 47 chr9 845956 846020 -117016607 - MIR3 SINE MIR -1 207 142 736 102 0 0 chr9 846021 846119 -117016508 - AluSg/x SINE Alu -8 304 207 317 54 161 18 chr9 846120 846176 -117016451 - MIR SINE MIR -55 153 90 1993 150 17 0 chr9 847180 847305 -117015322 + AluSx SINE Alu 6 127 -185 387 0 0 0 chr9 847305 847348 -117015279 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1993 150 17 0 chr9 847348 847516 -117015111 + AluSx SINE Alu 127 304 -8 1317 155 163 26 chr9 847525 847789 -117014838 + AluJo SINE Alu 2 301 -1 3772 170 28 21 chr9 847794 848513 -117014114 - L1MA10 LINE L1 -7 6327 5604 486 249 191 11 chr9 848813 849002 -117013625 + MIR SINE MIR 40 262 0 33 25 0 0 chr9 849586 849626 -117013001 + AT_rich Low_complexity Low_complexity 1 40 0 505 309 124 5 chr9 850335 850545 -117012082 - MIR SINE MIR -8 254 20 385 272 54 0 chr9 850550 850642 -117011985 + L2 LINE L2 3168 3264 -8 2200 103 20 0 chr9 853040 853341 -117009286 - AluSg SINE Alu -3 307 1 230 282 24 12 chr9 853359 853444 -117009183 - L2 LINE L2 -1030 2284 2199 1716 163 14 7 chr9 853829 854112 -117008515 + AluJb SINE Alu 6 290 -22 3690 151 44 27 chr9 854140 854817 -117007810 + L1MB3 LINE L1 5450 6138 -45 1171 144 0 0 chr9 854819 854993 -117007634 + FRAM SINE Alu 1 174 -2 22 0 0 0 chr9 855121 855143 -117007484 + AT_rich Low_complexity Low_complexity 1 22 0 1304 127 84 14 chr9 855341 855554 -117007073 - L1PA16 LINE L1 0 6166 5939 2033 143 3 0 chr9 856129 856436 -117006191 + AluSx SINE Alu 1 308 -4 2118 122 0 3 chr9 856774 857069 -117005558 - AluSx SINE Alu -18 294 1 2160 122 3 0 chr9 857925 858229 -117004398 - AluSx SINE Alu -7 305 1 212 246 138 0 chr9 858335 858400 -117004227 - L2 LINE L2 -2 3270 3197 292 237 92 0 chr9 858921 858997 -117003630 - MIR SINE MIR -75 187 105 384 199 32 12 chr9 859448 859556 -117003071 - MIR SINE MIR -61 147 36 284 262 37 0 chr9 860284 860362 -117002265 - MIR SINE MIR -58 150 76 194 0 0 37 chr9 860947 860974 -117001653 + (GGGTG)n Simple_repeat Simple_repeat 5 30 0 457 324 62 6 chr9 863150 863326 -116999301 - L1ME LINE L1 -462 5659 5474 23 0 0 0 chr9 864744 864767 -116997860 + AT_rich Low_complexity Low_complexity 1 23 0 205 161 0 0 chr9 866341 866372 -116996255 + polypyrimidine Low_complexity Low_complexity 1 31 0 23 33 0 0 chr9 866917 866947 -116995680 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr9 869275 869296 -116993331 + GC_rich Low_complexity Low_complexity 1 21 0 1839 101 63 7 chr9 869554 869840 -116992787 + AluSx SINE Alu 3 304 -8 208 53 53 0 chr9 873885 873923 -116988704 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 201 288 18 45 chr9 874917 875028 -116987599 + G-rich Low_complexity Low_complexity 3 110 0 326 222 9 19 chr9 875690 875798 -116986829 + (CCG)n Simple_repeat Simple_repeat 3 109 0 238 152 0 0 chr9 878986 879032 -116983595 - LTR66 LTR ERVL -168 442 397 437 209 9 9 chr9 880435 880540 -116982087 + MER53 DNA DNA 84 188 -1 229 220 17 17 chr9 881209 881268 -116981359 + CT-rich Low_complexity Low_complexity 3 61 0 220 299 46 46 chr9 881939 882026 -116980601 + L2 LINE L2 3186 3272 0 2081 88 10 10 chr9 882861 883158 -116979469 - AluY SINE Alu -14 297 1 2153 105 0 0 chr9 885012 885307 -116977320 + AluSg SINE Alu 1 295 -15 2852 137 46 0 chr9 885435 885814 -116976813 - L1MB3 LINE L1 -1 6182 5775 405 0 0 0 chr9 885814 885859 -116976768 + (TG)n Simple_repeat Simple_repeat 2 46 0 2852 137 46 0 chr9 885859 885955 -116976672 - L1MB3 LINE L1 -408 5775 5685 319 214 0 0 chr9 890333 890389 -116972238 - L2 LINE L2 0 3272 3217 1646 182 34 0 chr9 891202 891493 -116971134 + AluJb SINE Alu 1 301 -11 2263 107 0 0 chr9 891955 892263 -116970364 + AluSx SINE Alu 1 308 -4 239 310 200 0 chr9 892794 892939 -116969688 + MER5A DNA MER1_type 10 183 -6 365 361 67 0 chr9 894610 894790 -116967837 + MER91A DNA MER1_type 4 195 -1 2267 102 0 0 chr9 895230 895534 -116967093 - AluSc SINE Alu -5 304 1 2093 96 7 0 chr9 895867 896202 -116966425 + AluSq SINE Alu 1 313 0 1533 156 23 0 chr9 896288 896544 -116966083 + AluJo SINE Alu 1 262 -50 601 209 155 39 chr9 896554 896760 -116965867 - MIR SINE MIR 0 262 33 196 333 25 37 chr9 897860 897941 -116964686 - MER5A DNA MER1_type -29 160 81 201 149 0 64 chr9 898415 898462 -116964165 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 370 200 44 0 chr9 899243 899333 -116963294 - MER53 DNA DNA -15 174 81 279 0 0 0 chr9 899341 899372 -116963255 + (TG)n Simple_repeat Simple_repeat 2 32 0 499 163 24 65 chr9 899473 899596 -116963031 - MER53 DNA DNA -71 118 1 508 260 46 35 chr9 899677 899850 -116962777 + Charlie8 DNA MER1_type 2 176 -2241 237 238 32 16 chr9 900106 900169 -116962458 + MIR SINE MIR 85 148 -60 619 158 10 0 chr9 900264 900365 -116962262 - U6 snRNA snRNA -5 102 1 319 188 58 0 chr9 900567 900636 -116961991 - MLT1I LTR MaLR -11 398 326 1773 126 33 4 chr9 900700 900970 -116961657 - AluSx SINE Alu -12 300 23 293 287 53 0 chr9 901067 901161 -116961466 - MLT1J2 LTR MaLR -306 144 46 2170 107 3 0 chr9 901393 901692 -116960935 - AluSq SINE Alu -13 300 1 258 254 0 0 chr9 901713 901772 -116960855 - MIR SINE MIR -58 204 146 1636 170 0 56 chr9 902516 902839 -116959788 - AluJb SINE Alu -7 305 1 779 266 71 77 chr9 902857 903466 -116959161 - L1MC4a LINE L1 -1845 5963 5359 1763 152 0 23 chr9 903901 904210 -116958417 + AluJb SINE Alu 1 302 -10 451 290 127 56 chr9 904211 904769 -116957858 - L1MC5 LINE L1 -38 7923 7326 233 198 23 70 chr9 904975 905018 -116957609 - L1MC4 LINE L1 -835 7207 7168 2185 87 13 10 chr9 905018 905327 -116957300 - AluSx SINE Alu -1 311 2 233 198 23 70 chr9 905327 905369 -116957258 - L1MC4 LINE L1 -874 7168 7126 641 279 153 5 chr9 906265 906480 -116956147 + MIR SINE MIR 3 249 -13 4924 121 16 15 chr9 906705 907500 -116955127 + L1MA4A LINE L1 5507 6302 -1 371 253 40 0 chr9 908335 908434 -116954193 + MER5A DNA MER1_type 13 115 -74 468 257 48 0 chr9 908493 908598 -116954029 + MER5B DNA MER1_type 1 110 -68 1505 187 3 20 chr9 909028 909327 -116953300 - AluJo SINE Alu -18 294 1 310 258 0 0 chr9 909331 909393 -116953234 + MER5A DNA MER1_type 128 189 0 2040 103 0 48 chr9 909794 910105 -116952522 - AluSx SINE Alu -16 296 1 499 237 8 38 chr9 910716 910847 -116951780 - Charlie8 DNA MER1_type -2214 203 77 192 77 0 0 chr9 910857 910883 -116951744 + (A)n Simple_repeat Simple_repeat 1 26 0 2230 85 3 0 chr9 911005 911298 -116951329 + AluSx SINE Alu 1 294 -18 497 251 71 51 chr9 911802 912113 -116950514 + HAL1b LINE L1 658 974 -374 3407 233 40 7 chr9 912236 913124 -116949503 - L1ME3A LINE L1 -18 6152 5237 2106 266 74 17 chr9 913186 913815 -116948812 - L1ME3A LINE L1 -1121 5025 4343 2058 128 0 0 chr9 913815 914113 -116948514 + AluJb SINE Alu 1 298 -14 2106 266 74 17 chr9 914113 914254 -116948373 - L1ME3A LINE L1 -1803 4343 4211 55 0 0 0 chr9 914588 914643 -116947984 + AT_rich Low_complexity Low_complexity 1 55 0 2021 112 3 3 chr9 914643 914937 -116947690 - AluSx SINE Alu -18 294 1 1874 150 0 0 chr9 914946 915233 -116947394 - AluSx SINE Alu -25 287 1 2216 178 22 10 chr9 915243 915805 -116946822 - L1M4 LINE L1 -704 5480 4911 457 303 198 17 chr9 916941 917103 -116945524 - L2 LINE L2 -1 3271 3140 1916 112 11 4 chr9 917103 917371 -116945256 + AluSq SINE Alu 1 270 -43 457 303 198 17 chr9 917371 917672 -116944955 - L2 LINE L2 -132 3140 2709 1809 159 18 0 chr9 918677 918960 -116943667 - AluJb SINE Alu -24 288 1 223 156 67 0 chr9 919132 919177 -116943450 - L2 LINE L2 -93 3220 3173 582 281 95 33 chr9 920039 920281 -116942346 + MIR SINE MIR 6 262 0 3051 201 60 31 chr9 920421 920583 -116942044 - L1ME1 LINE L1 -126 6040 5884 2260 122 0 0 chr9 920583 920878 -116941749 - AluSx SINE Alu -17 295 1 3051 201 60 31 chr9 920878 921530 -116941097 - L1ME1 LINE L1 -282 5884 5200 234 278 204 12 chr9 922206 922368 -116940259 - MIR SINE MIR -58 204 12 2073 140 3 0 chr9 923123 923415 -116939212 + AluSx SINE Alu 1 293 -19 222 80 60 0 chr9 924288 924338 -116938289 + CT-rich Low_complexity Low_complexity 1 53 0 1702 167 14 24 chr9 924338 924626 -116938001 - AluJb SINE Alu -27 285 1 398 279 84 19 chr9 924687 924841 -116937786 - L1ME LINE L1 -345 5776 5613 687 217 24 18 chr9 924846 925012 -116937615 + MIR SINE MIR 75 241 -21 2239 117 0 7 chr9 925634 925932 -116936695 - AluSx SINE Alu -16 296 1 658 291 78 21 chr9 926274 926720 -116935907 - L1MC/D LINE L1 -328 5793 5337 231 197 13 26 chr9 926799 926875 -116935752 + CT-rich Low_complexity Low_complexity 2 76 0 861 191 33 6 chr9 928652 928835 -116933792 + MER5A DNA MER1_type 2 189 0 1564 184 28 31 chr9 928902 929256 -116933371 - L1MA9 LINE L1 -2 6310 5958 186 287 223 0 chr9 929285 929379 -116933248 - MIR SINE MIR -121 141 27 1993 112 64 14 chr9 929402 929697 -116932930 + AluSx SINE Alu 1 310 -2 530 208 69 39 chr9 929786 929916 -116932711 - MER63A DNA MER1_type -1 209 76 292 175 15 153 chr9 931272 931351 -116931276 + L1ME2 LINE L1 6038 6092 -72 1574 194 17 10 chr9 931351 931644 -116930983 + AluJb SINE Alu 1 295 -17 292 175 15 153 chr9 931644 931701 -116930926 + L1ME2 LINE L1 6092 6155 -9 222 185 19 0 chr9 932251 932305 -116930322 + MIR3 SINE MIR 153 207 -1 1932 139 33 3 chr9 933208 933510 -116929117 - AluJb SINE Alu -1 311 1 368 231 108 0 chr9 933600 933730 -116928897 - MER117 DNA MER1_type -50 147 4 295 155 0 34 chr9 934090 934162 -116928465 + Alu SINE Alu 244 302 0 1738 172 37 3 chr9 934335 934631 -116927996 - AluJb SINE Alu -6 306 1 410 310 43 27 chr9 934949 935133 -116927494 + MIR SINE MIR 11 197 -65 256 86 0 0 chr9 935184 935219 -116927408 - U2 snRNA snRNA -153 35 1 521 278 98 8 chr9 935333 935597 -116927030 + L2 LINE L2 2719 3017 -296 37 62 0 0 chr9 935663 935728 -116926899 + AT_rich Low_complexity Low_complexity 1 65 0 1879 164 3 13 chr9 938924 939236 -116923391 - AluJb SINE Alu -3 309 1 291 268 0 0 chr9 940079 940150 -116922477 - MIR SINE MIR -110 152 82 200 216 134 82 chr9 941687 941784 -116920843 - MIR3 SINE MIR -54 154 53 258 290 11 32 chr9 942683 942776 -116919851 - MIR3 SINE MIR -35 173 83 22 0 0 0 chr9 942830 942852 -116919775 + GC_rich Low_complexity Low_complexity 1 22 0 2611 32 3 10 chr9 943558 943869 -116918758 - AluY SINE Alu -2 309 1 24 0 0 0 chr9 944869 944893 -116917734 + AT_rich Low_complexity Low_complexity 1 24 0 1567 130 0 20 chr9 944984 945238 -116917389 - AluJb SINE Alu -34 278 30 210 209 0 90 chr9 945318 945385 -116917242 + G-rich Low_complexity Low_complexity 6 66 0 268 180 107 41 chr9 945764 945886 -116916741 - MIR SINE MIR -98 164 35 211 280 97 21 chr9 947158 947251 -116915376 + MIR SINE MIR 108 207 -55 218 111 0 44 chr9 947687 947732 -116914895 - L2 LINE L2 -9 3304 3262 26 64 0 0 chr9 950059 950106 -116912521 + GC_rich Low_complexity Low_complexity 1 47 0 233 270 0 0 chr9 950106 950180 -116912447 + (CGA)n Simple_repeat Simple_repeat 2 75 0 1030 133 0 0 chr9 950465 950608 -116912019 - AluSg SINE Alu -165 145 3 335 278 9 26 chr9 950806 950921 -116911706 - L1MC4a LINE L1 -1866 5942 5830 252 308 11 0 chr9 950961 951052 -116911575 - MIR3 SINE MIR -28 180 89 217 204 20 0 chr9 951226 951275 -116911352 - MIR SINE MIR -125 137 88 278 332 58 13 chr9 952528 952809 -116909818 + L3 LINE CR1 1075 1416 -161 193 296 74 25 chr9 952930 953011 -116909616 - MER5B DNA MER1_type -72 106 22 209 196 0 39 chr9 953427 953478 -116909149 - MIR3 SINE MIR -13 195 147 230 339 16 0 chr9 953483 953545 -116909082 - MIR SINE MIR -112 96 34 389 337 17 6 chr9 954030 954202 -116908425 - MER5A DNA MER1_type -9 180 7 346 276 142 0 chr9 955541 955766 -116906861 - L1MC4a LINE L1 -1847 5961 5705 629 226 25 25 chr9 956039 956198 -116906429 + L1ME1 LINE L1 5938 6096 -70 * 1392 194 39 51 chr9 956192 956548 -116906079 + L1MA10 LINE L1 5976 6327 -7 302 127 0 0 chr9 956573 956628 -116905999 + L1MB8 LINE L1 6108 6162 -16 198 0 0 0 chr9 957742 957764 -116904863 + (T)n Simple_repeat Simple_repeat 1 22 0 259 207 69 0 chr9 959882 959940 -116902687 + U6 snRNA snRNA 1 62 -45 180 77 0 0 chr9 960174 960200 -116902427 + (CAAAA)n Simple_repeat Simple_repeat 3 28 0 25 0 0 0 chr9 960631 960656 -116901971 + AT_rich Low_complexity Low_complexity 1 25 0 207 69 0 0 chr9 961447 961476 -116901151 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 227 255 0 64 chr9 961544 961638 -116900989 + T-rich Low_complexity Low_complexity 5 92 0 203 77 0 26 chr9 961890 961929 -116900698 + (CAA)n Simple_repeat Simple_repeat 2 39 0 678 167 0 24 chr9 964260 964386 -116898241 - AluJb SINE Alu -22 290 168 2431 36 0 0 chr9 965137 965449 -116897178 + AluY SINE Alu 1 312 0 2144 105 14 0 chr9 966003 966299 -116896328 - AluSq SINE Alu -13 300 1 1748 119 85 107 chr9 966441 966843 -116895784 - L1MB3 LINE L1 -2 6181 5789 180 179 0 0 chr9 966844 966883 -116895744 + (TG)n Simple_repeat Simple_repeat 2 40 0 276 235 11 49 chr9 967219 967402 -116895225 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 587 238 0 2 chr9 967402 967558 -116895069 - L1MB3 LINE L1 -378 5796 5643 23 0 0 0 chr9 968131 968154 -116894473 + AT_rich Low_complexity Low_complexity 1 23 0 269 385 0 8 chr9 968688 968818 -116893809 + LTR16B LTR ERVL 102 230 -234 1524 330 123 29 chr9 969658 970645 -116891982 + L3 LINE CR1 355 1433 -144 2320 98 3 0 chr9 970964 971259 -116891368 - AluSp SINE Alu -17 296 1 1291 159 89 63 chr9 971266 971404 -116891223 - AluJo SINE Alu -16 296 163 195 0 27 54 chr9 971404 971441 -116891186 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 15724 91 5 11 chr9 971448 974334 -116888293 - L1PA7 LINE L1 -13 6141 3268 2151 134 0 0 chr9 974334 974641 -116887986 - AluSc SINE Alu -1 308 2 15724 91 5 11 chr9 974641 974809 -116887818 - L1PA7 LINE L1 -2886 3268 3100 1291 159 89 63 chr9 974809 974932 -116887695 - AluJo SINE Alu -154 158 20 2216 123 21 39 chr9 974951 975334 -116887293 - Tigger2a DNA MER2_type -58 376 1 1881 175 46 9 chr9 975379 975704 -116886923 - MER1B DNA MER1_type 0 337 1 191 265 15 44 chr9 976611 976679 -116885948 - L2 LINE L2 0 3313 3248 1249 199 0 5 chr9 976734 976945 -116885682 + AluJo SINE Alu 84 293 -19 729 261 97 39 chr9 977151 977534 -116885093 + MLT1J LTR MaLR 6 410 -101 2338 135 103 97 chr9 977585 978245 -116884382 - MER4A LTR ERV1 0 664 1 657 281 63 28 chr9 978799 979052 -116883575 - MIR SINE MIR 0 262 1 534 132 0 0 chr9 979594 979670 -116882957 - AluS SINE Alu -13 296 221 1030 120 7 0 chr9 979670 979820 -116882807 - AluJb SINE Alu -161 151 1 2330 78 17 0 chr9 979829 980122 -116882505 - AluY SINE Alu -13 298 1 2408 85 13 3 chr9 980137 980443 -116882184 - AluY SINE Alu 0 311 3 30 0 0 78 chr9 980872 980902 -116881725 + AT_rich Low_complexity Low_complexity 1 25 -34 1999 142 0 13 chr9 980902 981204 -116881423 - AluSx SINE Alu -14 298 1 30 0 0 78 chr9 981204 981237 -116881390 + AT_rich Low_complexity Low_complexity 25 59 0 2293 94 3 10 chr9 981308 981605 -116881022 - AluSg SINE Alu -15 295 1 720 217 39 10 chr9 983669 983876 -116878751 - L1MB3 LINE L1 -3 6180 5968 304 271 141 40 chr9 984041 984201 -116878426 - L1ME LINE L1 -545 5579 5397 237 322 22 11 chr9 984204 984384 -116878243 - L1ME LINE L1 -750 5396 5215 1884 149 4 0 chr9 984596 984877 -116877750 - AluJo SINE Alu -30 282 1 751 297 119 33 chr9 984877 985967 -116876660 - L1ME LINE L1 -1089 5057 3874 669 249 94 26 chr9 986223 986456 -116876171 - MIR SINE MIR -13 249 1 1209 211 39 24 chr9 986570 986907 -116875720 + L1MC4 LINE L1 6806 7147 -895 801 234 85 60 chr9 987059 987494 -116875133 + L1MC4 LINE L1 7587 8032 -10 1268 124 119 0 chr9 987555 987756 -116874871 + AluJo SINE Alu 87 311 -1 260 62 42 0 chr9 988340 988388 -116874239 - L1MB3 LINE L1 -7 6176 6127 894 188 42 16 chr9 988397 988589 -116874038 + Tigger2 DNA MER2_type 1 197 -2521 2584 125 48 2 chr9 988689 989129 -116873498 + Tigger2 DNA MER2_type 57 516 -2202 2446 64 0 6 chr9 989137 989448 -116873179 - AluSg SINE Alu 0 310 2 1367 235 76 53 chr9 989448 990133 -116872494 - MER49 LTR ERV1 -41 881 5 1163 119 0 0 chr9 990141 990309 -116872318 + Tigger2 DNA MER2_type 577 744 -1974 1457 146 4 15 chr9 990364 990625 -116872002 + Tigger2 DNA MER2_type 2461 2718 0 3139 145 31 22 chr9 990627 991283 -116871344 - L1MB3 LINE L1 -64 6119 5417 757 224 75 0 chr9 991560 991734 -116870893 - MER5A DNA MER1_type 0 189 3 21 0 0 0 chr9 991762 991783 -116870844 + AT_rich Low_complexity Low_complexity 1 21 0 379 240 72 72 chr9 993663 993788 -116868839 + MLT1D LTR MaLR 1 125 -380 297 143 0 0 chr9 993789 993838 -116868789 + MLT1D LTR MaLR 457 505 0 438 257 179 14 chr9 993936 994076 -116868551 - MER5A DNA MER1_type 0 189 27 308 184 88 79 chr9 994515 994629 -116867998 - L1ME4a LINE L1 -1 6120 6006 985 156 22 0 chr9 994825 995004 -116867623 + MER20 DNA MER1_type 33 215 -4 819 205 5 60 chr9 995014 995214 -116867413 - MER5A DNA MER1_type 0 189 1 21 36 0 0 chr9 996360 996388 -116866239 + AT_rich Low_complexity Low_complexity 1 28 0 400 257 122 15 chr9 996454 996604 -116866023 - MIR SINE MIR -60 148 20 890 219 11 0 chr9 998138 998321 -116864306 - MER5A DNA MER1_type -1 188 4 229 321 80 51 chr9 999038 999175 -116863452 - MIR3 SINE MIR -65 143 3 180 0 0 0 chr9 999807 999827 -116862800 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 231 167 0 0 chr9 1000180 1000222 -116862405 + (CATA)n Simple_repeat Simple_repeat 2 43 0 6413 86 7 12 chr9 1000248 1001547 -116861080 - L1PA13 LINE L1 -19 6144 4849 414 37 0 0 chr9 1001553 1001607 -116861020 - MLT2A1 LTR ERVL 0 444 391 183 42 0 0 chr9 1001615 1001639 -116860988 + (TA)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr9 1001727 1001750 -116860877 + (TA)n Simple_repeat Simple_repeat 1 23 0 439 201 22 39 chr9 1001804 1001983 -116860644 + (TA)n Simple_repeat Simple_repeat 1 176 0 316 253 101 0 chr9 1001984 1002083 -116860544 + L1MC4 LINE L1 6583 6691 -1351 2905 94 0 5 chr9 1002083 1002489 -116860138 - MLT2A1 LTR ERVL -40 404 1 10235 158 16 19 chr9 1002551 1003703 -116858924 - L1P LINE L1 -1295 4851 3698 369 0 0 0 chr9 1003703 1003744 -116858883 + (TG)n Simple_repeat Simple_repeat 1 41 0 10235 158 16 19 chr9 1003744 1003961 -116858666 - L1P LINE L1 -2448 3698 3482 1077 63 0 7 chr9 1003961 1004103 -116858524 - L1PA5 LINE L1 -7 6147 6007 10235 158 16 19 chr9 1004103 1004761 -116857866 - L1P LINE L1 -2664 3482 2828 6170 88 1 4 chr9 1004761 1005615 -116857012 - L1PA8 LINE L1 0 6172 5314 2269 102 7 0 chr9 1005615 1005918 -116856709 - AluSq SINE Alu -8 305 1 6170 88 1 4 chr9 1005918 1006588 -116856039 - L1PA8 LINE L1 -858 5314 4644 4243 216 46 11 chr9 1006592 1007747 -116854880 - L1M4 LINE L1 -1551 4595 3401 444 153 28 0 chr9 1057748 1057820 -116804807 - AluJ/FLAM SINE Alu -238 74 1 334 299 84 24 chr9 1057820 1057987 -116804640 + L2 LINE L2 1945 2121 -1193 201 191 44 103 chr9 1057977 1058045 -116804582 + MER5B DNA MER1_type 9 72 -106 * 327 296 87 0 chr9 1058033 1058148 -116804479 + L2 LINE L2 2250 2374 -940 3872 156 21 0 chr9 1058555 1059265 -116803362 - L1MA7 LINE L1 -10 6485 5761 1261 108 36 115 chr9 1059265 1059544 -116803083 - Tigger7 DNA MER2_type -1 2486 2230 11004 166 33 18 chr9 1059578 1059814 -116802813 - L1MA7 LINE L1 -728 5767 5536 212 77 26 0 chr9 1059814 1059853 -116802774 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6542 34 12 1 chr9 1059854 1061380 -116801247 - L1PA5 LINE L1 -13 6141 4547 11004 166 33 18 chr9 1061380 1063630 -116798997 - L1MA7 LINE L1 -959 5536 3236 2535 11 0 0 chr9 1063630 1063906 -116798721 - AluYa5 SINE Alu 0 311 36 11004 166 33 18 chr9 1063906 1064013 -116798614 - L1MA7 LINE L1 -3259 3236 3132 3558 261 31 34 chr9 1064350 1066018 -116796609 - L1MA7 LINE L1 -3213 3137 1465 1819 176 7 0 chr9 1066018 1066313 -116796314 - AluSx SINE Alu -15 297 1 3558 261 31 34 chr9 1066313 1066893 -116795734 - L1MA7 LINE L1 -4885 1465 1329 2064 143 0 29 chr9 1066893 1067201 -116795426 - AluSx SINE Alu -11 301 3 3558 261 31 34 chr9 1067201 1067930 -116794697 - L1MA7 LINE L1 -5021 1329 599 2952 244 9 23 chr9 1067907 1067992 -116794635 - L1MA7 LINE L1 -5543 738 653 * 2431 70 0 19 chr9 1067992 1068304 -116794323 + AluY SINE Alu 1 306 -5 2952 244 9 23 chr9 1068304 1068965 -116793662 - L1MA7 LINE L1 -5628 653 2 200 205 0 0 chr9 1069035 1069074 -116793553 + (TG)n Simple_repeat Simple_repeat 2 40 0 755 309 148 26 chr9 1069153 1069681 -116792946 - L2 LINE L2 -949 2365 1774 313 309 71 52 chr9 1069735 1069945 -116792682 + L1ME LINE L1 51 264 -5855 1078 302 25 24 chr9 1070363 1071144 -116791483 + L1ME LINE L1 742 1564 -4746 3388 163 34 34 chr9 1071168 1071782 -116790845 - L1MB1 LINE L1 -225 5943 5330 2201 108 0 3 chr9 1071782 1072079 -116790548 - AluSg SINE Alu -14 296 1 3388 163 34 34 chr9 1072079 1072938 -116789689 - L1MB1 LINE L1 -838 5330 3734 22135 48 2 0 chr9 1073084 1073730 -116788897 + L1PA5 LINE L1 2562 3205 -2949 2377 81 0 0 chr9 1073730 1074026 -116788601 - AluY SINE Alu -15 296 1 22135 48 2 0 chr9 1074026 1076975 -116785652 + L1PA5 LINE L1 3205 6153 -1 254 274 67 12 chr9 1077030 1077194 -116785433 + L1ME LINE L1 3267 3439 -2690 * 285 353 55 0 chr9 1077170 1077388 -116785239 + L1ME LINE L1 3365 3594 -2535 1062 282 78 32 chr9 1079129 1079383 -116783244 + L1ME LINE L1 3608 3849 -2280 2289 104 0 13 chr9 1079383 1079700 -116782927 + AluSq SINE Alu 1 313 0 1062 282 78 32 chr9 1079700 1080155 -116782472 + L1ME LINE L1 3849 4349 -1780 428 238 37 18 chr9 1080261 1080425 -116782202 - L1M4 LINE L1 -2107 4039 3873 646 277 140 15 chr9 1080429 1080887 -116781740 + L1ME LINE L1 4493 5007 -1122 1268 194 4 9 chr9 1081068 1081300 -116781327 + MER8 DNA MER2_type 1 231 -8 274 302 53 36 chr9 1081674 1081899 -116780728 - HAL1 LINE L1 -846 1661 1433 351 113 0 0 chr9 1082669 1082722 -116779905 + (CA)n Simple_repeat Simple_repeat 1 53 0 223 254 14 0 chr9 1083128 1083199 -116779428 + (CA)n Simple_repeat Simple_repeat 1 72 0 986 215 24 0 chr9 1083910 1084119 -116778508 - MER58A DNA MER1_type 0 224 11 354 45 0 0 chr9 1085711 1085755 -116776872 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 901 174 0 0 chr9 1085765 1085903 -116776724 - FRAM SINE Alu -38 138 1 419 292 65 53 chr9 1087004 1087401 -116775226 + MLT1J LTR MaLR 79 480 -31 388 223 10 29 chr9 1087433 1087536 -116775091 + MIR SINE MIR 86 186 -76 411 296 0 9 chr9 1087694 1087809 -116774818 + MER81 DNA DNA 1 114 0 242 310 0 0 chr9 1087817 1087888 -116774739 + MER81 DNA DNA 44 114 0 303 297 83 48 chr9 1089742 1089887 -116772740 + MIR SINE MIR 110 259 -3 234 375 75 25 chr9 1090417 1090577 -116772050 - L2 LINE L2 -222 3050 2883 306 182 0 0 chr9 1090711 1090777 -116771850 + CT-rich Low_complexity Low_complexity 1 66 0 695 162 7 0 chr9 1090942 1091084 -116771543 + CT-rich Low_complexity Low_complexity 2 144 0 300 333 8 33 chr9 1091606 1091726 -116770901 - MIR SINE MIR -134 128 12 1510 224 259 23 chr9 1091944 1092472 -116770155 + MER82 DNA MER2_type 1 653 0 392 246 272 15 chr9 1092475 1092670 -116769957 - MIR SINE MIR -10 252 8 223 332 82 0 chr9 1092675 1092776 -116769851 - MIR SINE MIR -77 131 22 309 200 66 0 chr9 1093304 1093393 -116769234 + L1MC/D LINE L1 5715 5808 -313 430 283 61 20 chr9 1093707 1093905 -116768722 - L1MDa LINE L1 -3949 2591 2386 744 261 106 11 chr9 1094090 1094439 -116768188 - L1MDa LINE L1 -4573 2148 1767 497 345 133 15 chr9 1094645 1094984 -116767643 + L1MEd LINE L1 472 850 -5269 204 202 0 36 chr9 1095686 1095770 -116766857 + GA-rich Low_complexity Low_complexity 1 81 0 270 303 18 36 chr9 1096122 1096287 -116766340 - L2 LINE L2 -224 3048 2887 282 29 0 0 chr9 1098042 1098077 -116764550 + (TG)n Simple_repeat Simple_repeat 1 35 0 272 145 290 0 chr9 1101247 1101309 -116761318 - MADE1 DNA Mariner 0 80 1 890 201 48 0 chr9 1101475 1101664 -116760963 + MER58 DNA MER1_type 4 201 -2219 2007 151 6 10 chr9 1101664 1101975 -116760652 + AluJb SINE Alu 1 310 -2 21 0 0 0 chr9 1102341 1102362 -116760265 + AT_rich Low_complexity Low_complexity 1 21 0 809 259 59 4 chr9 1102426 1102665 -116759962 - L1ME1 LINE L1 -8 6158 5907 21 0 0 0 chr9 1102881 1102902 -116759725 + AT_rich Low_complexity Low_complexity 1 21 0 4179 85 51 22 chr9 1104723 1105348 -116757279 + L1PA11 LINE L1 5529 6171 -3 216 0 0 0 chr9 1105938 1105962 -116756665 + (T)n Simple_repeat Simple_repeat 1 24 0 429 275 129 23 chr9 1106807 1106978 -116755649 - MER5A DNA MER1_type 0 189 1 323 246 32 24 chr9 1107187 1107313 -116755314 - L1ME4a LINE L1 -17 6104 5978 250 260 41 24 chr9 1107745 1107868 -116754759 - LTR67 LTR ERVL 0 557 433 635 243 55 141 chr9 1108004 1108044 -116754583 - L2 LINE L2 0 3313 3271 2477 146 50 2 chr9 1108044 1108463 -116754164 - L1PA16 LINE L1 -11 6155 5717 635 243 55 141 chr9 1108463 1108825 -116753802 - L2 LINE L2 -42 3271 2946 * 1191 223 208 29 chr9 1108812 1108856 -116753771 - L2 LINE L2 -581 2733 2698 2220 84 3 17 chr9 1108856 1109153 -116753474 + AluY SINE Alu 1 293 -18 1191 223 208 29 chr9 1109153 1109634 -116752993 - L2 LINE L2 -616 2698 2061 249 375 77 0 chr9 1110031 1110135 -116752492 + L2 LINE L2 3149 3260 -12 649 184 18 9 chr9 1110154 1110268 -116752359 - FLAM_A SINE Alu -17 116 2 1322 283 109 13 chr9 1110353 1110887 -116751740 - MLT1K LTR MaLR -2 586 2 22 35 0 0 chr9 1112366 1112395 -116750232 + AT_rich Low_complexity Low_complexity 1 29 0 359 155 0 28 chr9 1112395 1112466 -116750161 + Charlie5 DNA MER1_type 2233 2301 -311 672 142 9 9 chr9 1112475 1112588 -116750039 - L1MC1 LINE L1 -5 6328 6216 12333 95 10 10 chr9 1112588 1114433 -116748194 - L1P LINE L1 -4301 1845 1 2450 142 11 47 chr9 1114432 1114905 -116747722 - L1MC1 LINE L1 -104 6229 5774 * 267 322 47 53 chr9 1115157 1115328 -116747299 + MIR SINE MIR 20 189 -73 450 127 0 0 chr9 1115374 1115445 -116747182 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 2009 138 17 0 chr9 1115445 1115736 -116746891 - AluSx SINE Alu -16 296 1 32172 45 3 2 chr9 1116497 1119445 -116743182 - L1PA4 LINE L1 -9 6146 3201 2378 86 3 0 chr9 1119445 1119746 -116742881 + AluY SINE Alu 1 302 -9 32172 45 3 2 chr9 1119746 1122939 -116739688 - L1PA4 LINE L1 -2954 3201 3 207 215 62 46 chr9 1122989 1123054 -116739573 + L2 LINE L2 3184 3249 -64 300 274 0 0 chr9 1123521 1123605 -116739022 + MER103 DNA DNA 80 163 -3 2289 95 0 25 chr9 1123808 1124124 -116738503 + AluSx SINE Alu 1 308 -4 584 283 99 9 chr9 1124643 1124855 -116737772 - MIR SINE MIR -18 244 14 198 103 0 0 chr9 1124875 1124904 -116737723 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 230 118 0 0 chr9 1125083 1125117 -116737510 + Charlie8 DNA MER1_type 1374 1407 -1010 323 333 21 0 chr9 1125284 1125380 -116737247 - L3 LINE CR1 -54 1523 1426 300 376 68 14 chr9 1125611 1125832 -116736795 - L3 LINE CR1 -480 1097 865 687 256 23 6 chr9 1126938 1127114 -116735513 + MIR SINE MIR 13 191 -71 356 266 7 65 chr9 1128832 1128986 -116733641 + L1ME4a LINE L1 5571 5715 -406 237 75 25 25 chr9 1129049 1129089 -116733538 + L1ME4a LINE L1 5725 5764 -357 301 312 27 32 chr9 1129115 1129301 -116733326 + L1ME4a LINE L1 5861 6045 -76 368 314 50 0 chr9 1130804 1130925 -116731702 - MIR3 SINE MIR -41 167 41 1917 180 0 0 chr9 1131572 1131877 -116730750 - AluJo SINE Alu -7 305 1 313 234 49 12 chr9 1132271 1132376 -116730251 - MIR SINE MIR -79 129 20 1152 153 0 0 chr9 1132621 1132797 -116729830 + L1PA16 LINE L1 5980 6155 -11 486 259 94 18 chr9 1132822 1132992 -116729635 + MIR SINE MIR 59 241 -21 262 318 116 8 chr9 1133226 1133355 -116729272 - MIR SINE MIR -71 191 49 312 320 17 10 chr9 1134111 1134283 -116728344 + GA-rich Low_complexity Low_complexity 2 293 0 653 281 69 16 chr9 1135833 1136139 -116726488 - LTR33 LTR ERVL -20 501 180 754 22 0 0 chr9 1136139 1136230 -116726397 - L1PA5 LINE L1 -1322 4824 4734 7649 51 0 23 chr9 1136230 1137575 -116725052 + L1PA5 LINE L1 4831 6154 0 580 214 115 50 chr9 1137576 1137758 -116724869 - LTR33 LTR ERVL -327 194 1 882 133 0 8 chr9 1139433 1139561 -116723066 + AluJb SINE Alu 1 127 -185 293 296 125 6 chr9 1140578 1140754 -116721873 - L1ME LINE L1 -531 5590 5394 558 108 26 25 chr9 1140982 1141173 -116721454 - L1MA4A LINE L1 -24 6279 6028 288 277 40 0 chr9 1141406 1141507 -116721120 - LTR67 LTR ERVL -2 555 451 2742 146 5 34 chr9 1141893 1142337 -116720290 - Tigger2a DNA MER2_type -2 432 2 388 297 55 25 chr9 1142416 1142827 -116719800 - L1ME LINE L1 -1445 4701 4274 25 75 0 0 chr9 1144867 1144920 -116717707 + AT_rich Low_complexity Low_complexity 1 53 0 1227 269 63 41 chr9 1146099 1146419 -116716208 - LTR33 LTR ERVL -2 519 184 195 42 0 0 chr9 1146419 1146443 -116716184 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1227 269 63 41 chr9 1146443 1146583 -116716044 - LTR33 LTR ERVL -337 184 49 1448 175 126 7 chr9 1147126 1147395 -116715232 - AluJo SINE Alu -1 301 1 477 321 134 13 chr9 1147530 1147754 -116714873 - MIR SINE MIR -1 261 11 22 0 0 0 chr9 1147865 1147887 -116714740 + AT_rich Low_complexity Low_complexity 1 22 0 1853 167 49 71 chr9 1148553 1149020 -116713607 - LTR16A1 LTR ERVL 0 457 1 1834 213 3 42 chr9 1149043 1149423 -116713204 + MLT1A1 LTR MaLR 1 365 0 227 269 30 15 chr9 1149523 1149590 -116713037 - MER112 DNA MER1_type -189 71 4 2024 123 0 7 chr9 1150286 1150602 -116712025 - AluSx SINE Alu 0 314 1 43715 34 23 1 chr9 1150652 1156673 -116705954 + L1PA2 LINE L1 1 6155 0 189 74 0 0 chr9 1156701 1156728 -116705899 + (A)n Simple_repeat Simple_repeat 1 27 0 734 279 169 24 chr9 1156731 1156862 -116705765 + L1ME3A LINE L1 4015 4126 -2020 210 91 0 0 chr9 1156862 1156895 -116705732 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 734 279 169 24 chr9 1156895 1157508 -116705119 + L1ME3A LINE L1 4126 4867 -1279 528 272 36 15 chr9 1157592 1157787 -116704840 + L1ME3A LINE L1 5749 5947 -223 273 249 85 58 chr9 1157860 1158049 -116704578 + L1ME3A LINE L1 5963 6156 -14 480 190 0 0 chr9 1160091 1160170 -116702457 - FLAM_A SINE Alu -43 99 21 658 276 117 26 chr9 1160252 1160603 -116702024 - L1ME4a LINE L1 -218 5903 5521 22 0 0 0 chr9 1160651 1160673 -116701954 + AT_rich Low_complexity Low_complexity 1 22 0 404 260 164 71 chr9 1161021 1161567 -116701060 - L1ME4a LINE L1 -34 6087 5462 1775 170 0 16 chr9 1161567 1161884 -116700743 - AluJb SINE Alu 0 312 1 404 260 164 71 chr9 1161884 1162059 -116700568 - L1ME4a LINE L1 -659 5462 5305 21 0 0 0 chr9 1162372 1162393 -116700234 + AT_rich Low_complexity Low_complexity 1 21 0 392 289 133 8 chr9 1162691 1162819 -116699808 + MLT1J LTR MaLR 9 152 -359 593 231 8 0 chr9 1162918 1163035 -116699592 + LTR16A1 LTR ERVL 3 120 -337 334 278 44 0 chr9 1163071 1163161 -116699466 + MLT1J LTR MaLR 292 385 -126 2591 187 18 66 chr9 1163432 1163591 -116699036 - LTR27 LTR ERV1 0 636 471 1961 168 60 26 chr9 1163591 1163942 -116698685 - THE1B LTR MaLR -1 363 1 2591 187 18 66 chr9 1163942 1164449 -116698178 - LTR27 LTR ERV1 -165 471 2 224 264 36 45 chr9 1164457 1164567 -116698060 + MIR SINE MIR 100 208 -54 409 296 41 21 chr9 1165062 1165266 -116697361 - ERVL LTR ERVL -1923 3562 3357 255 323 40 0 chr9 1165420 1165519 -116697108 - ERVL LTR ERVL -2584 3180 3078 1059 232 147 4 chr9 1165596 1165868 -116696759 + LTR16C LTR ERVL 79 389 -102 312 235 0 49 chr9 1165893 1165995 -116696632 - L1MC4a LINE L1 -1860 5948 5852 627 125 0 0 chr9 1166027 1166123 -116696504 - L1PA16 LINE L1 0 6166 6071 1018 166 11 6 chr9 1166188 1166369 -116696258 - L1PA15 LINE L1 -100 6065 5884 300 191 16 0 chr9 1166369 1166432 -116696195 + LTR16C LTR ERVL 428 491 0 987 310 82 43 chr9 1166448 1167624 -116695003 - ERVL LTR ERVL -2462 3023 1787 2011 136 10 3 chr9 1167699 1167993 -116694634 - AluSg SINE Alu -14 296 1 1309 180 18 9 chr9 1168681 1168903 -116693724 + MSTB1 LTR MaLR 5 228 -204 529 299 48 11 chr9 1168907 1169094 -116693533 - MIR SINE MIR -19 243 50 479 343 94 9 chr9 1169551 1169784 -116692843 + MIR SINE MIR 10 262 0 2093 130 10 0 chr9 1170685 1170984 -116691643 + AluSq SINE Alu 1 302 -11 24 32 0 0 chr9 1171047 1171078 -116691549 + AT_rich Low_complexity Low_complexity 1 31 0 2171 115 138 26 chr9 1171503 1171887 -116690740 + MSTC LTR MaLR 2 428 0 357 294 39 39 chr9 1171969 1172149 -116690478 + MLT1J LTR MaLR 1 180 -331 2676 49 0 0 chr9 1172201 1172566 -116690061 + L1PA5 LINE L1 5812 6176 0 239 177 38 51 chr9 1172726 1172805 -116689822 + MLT1J LTR MaLR 403 480 -31 1906 171 11 22 chr9 1172923 1173291 -116689336 + MLT1A1 LTR MaLR 1 364 -1 192 343 0 0 chr9 1174325 1174392 -116688235 + MIR SINE MIR 182 248 -14 371 278 28 0 chr9 1174624 1174732 -116687895 + MIR SINE MIR 3 113 -149 225 139 0 0 chr9 1174787 1174823 -116687804 - L1P4 LINE L1 -532 5642 5607 375 269 156 6 chr9 1174826 1174986 -116687641 + MIR SINE MIR 79 262 0 207 0 0 0 chr9 1175896 1175919 -116686708 + (TG)n Simple_repeat Simple_repeat 2 24 0 33 56 0 0 chr9 1175919 1175973 -116686654 + AT_rich Low_complexity Low_complexity 1 54 0 452 72 14 0 chr9 1175974 1176043 -116686584 + (TA)n Simple_repeat Simple_repeat 1 70 0 292 292 36 105 chr9 1177667 1177886 -116684741 + MIR SINE MIR 48 251 -11 391 326 62 26 chr9 1177899 1178126 -116684501 + MIR SINE MIR 18 252 -10 228 233 0 0 chr9 1178775 1178818 -116683809 + polypurine Low_complexity Low_complexity 2 44 0 485 267 2 42 chr9 1179473 1179616 -116683011 + MIR SINE MIR 53 190 -68 507 246 266 10 chr9 1181300 1181503 -116681124 + MIR SINE MIR 3 257 -5 864 221 57 12 chr9 1181873 1182117 -116680510 - L1ME2 LINE L1 -199 5965 5711 304 281 0 12 chr9 1182973 1183055 -116679572 + MER81 DNA DNA 17 97 -17 291 218 173 64 chr9 1183268 1183378 -116679249 - MIR3 SINE MIR -47 161 40 5428 142 30 25 chr9 1183450 1185146 -116677481 + L1MA4 LINE L1 4563 6281 -19 218 273 18 0 chr9 1185185 1185240 -116677387 - MER5A DNA MER1_type -98 91 36 301 275 171 31 chr9 1189414 1189568 -116673059 + MIR SINE MIR 5 193 -69 366 23 0 0 chr9 1189568 1189611 -116673016 + (TG)n Simple_repeat Simple_repeat 2 44 0 301 275 171 31 chr9 1189611 1189649 -116672978 + MIR SINE MIR 193 224 -38 241 122 24 0 chr9 1189695 1189736 -116672891 - L2 LINE L2 -4 3309 3268 425 264 86 6 chr9 1189737 1189900 -116672727 - L2 LINE L2 -1907 1407 1232 282 239 54 33 chr9 1190419 1190511 -116672116 - MLT1H LTR MaLR -16 533 433 383 311 146 0 chr9 1191295 1191446 -116671181 - L3 LINE CR1 -8 1569 1397 210 239 103 65 chr9 1192560 1192715 -116669912 - L3 LINE CR1 -381 1196 1036 296 24 0 24 chr9 1193791 1193833 -116668794 + (TA)n Simple_repeat Simple_repeat 2 42 0 764 332 118 13 chr9 1193836 1194546 -116668081 + ERVL LTR ERVL 3305 4089 -1675 283 341 90 20 chr9 1194575 1194918 -116667709 + ERVL LTR ERVL 4296 4662 -992 495 347 46 28 chr9 1194964 1195422 -116667205 + ERVL LTR ERVL 4770 5235 -529 841 251 132 30 chr9 1195725 1196128 -116666499 + LTR16A1 LTR ERVL 14 457 0 263 267 11 0 chr9 1196263 1196353 -116666274 - LTR16A1 LTR ERVL -339 118 28 257 233 0 12 chr9 1196801 1196887 -116665740 + CT-rich Low_complexity Low_complexity 2 86 0 368 300 130 34 chr9 1198668 1198896 -116663731 - MIR SINE MIR 0 262 3 2168 125 0 0 chr9 1198942 1199231 -116663396 - AluSx SINE Alu -23 289 1 224 402 39 0 chr9 1199383 1199485 -116663142 - L2 LINE L2 -16 3256 3151 215 100 0 25 chr9 1201319 1201359 -116661268 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 4608 170 6 30 chr9 1201597 1202861 -116659766 + L1MB3 LINE L1 4903 6138 -45 1226 188 62 62 chr9 1202861 1202937 -116659690 + AluJo SINE Alu 44 119 -193 180 0 0 0 chr9 1202937 1202957 -116659670 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 1226 188 62 62 chr9 1202957 1203136 -116659491 + AluJo SINE Alu 118 299 -13 331 131 0 0 chr9 1203136 1203197 -116659430 + L1MB2 LINE L1 6111 6171 0 1001 237 113 47 chr9 1203999 1204505 -116658122 - L1ME4a LINE L1 -17 6104 5566 317 289 26 46 chr9 1204679 1204831 -116657796 - L1ME4a LINE L1 -786 5360 5212 1169 167 8 71 chr9 1204906 1205158 -116657469 + MER46A DNA MER2_type 1 236 0 1233 160 60 14 chr9 1205298 1205357 -116657270 - L1MA7 LINE L1 -6 6285 6230 318 26 0 0 chr9 1205357 1205396 -116657231 + (CA)n Simple_repeat Simple_repeat 2 40 0 1233 160 60 14 chr9 1205396 1205617 -116657010 - L1MA7 LINE L1 -61 6230 5992 455 265 87 99 chr9 1206046 1206215 -116656412 - HAL1 LINE L1 -1 2506 2336 2447 45 0 19 chr9 1206215 1206524 -116656103 - AluY SINE Alu -8 303 1 455 265 87 99 chr9 1206524 1206758 -116655869 - HAL1 LINE L1 -171 2336 2108 1914 195 29 43 chr9 1206921 1207413 -116655214 - HAL1 LINE L1 -1959 548 64 26 30 0 0 chr9 1207624 1207657 -116654970 + AT_rich Low_complexity Low_complexity 1 33 0 2381 90 0 0 chr9 1208379 1208680 -116653947 - AluY SINE Alu -10 301 1 433 301 78 41 chr9 1208778 1208997 -116653630 - MIR SINE MIR -16 246 20 241 183 14 28 chr9 1209414 1209485 -116653142 + GA-rich Low_complexity Low_complexity 2 71 0 258 321 71 18 chr9 1209594 1209706 -116652921 + L2 LINE L2 3196 3313 0 208 121 0 0 chr9 1210662 1210695 -116651932 + (CA)n Simple_repeat Simple_repeat 2 34 0 343 96 0 0 chr9 1212990 1213042 -116649585 + L1 LINE L1 5197 5248 -898 996 127 6 11 chr9 1213710 1213891 -116648736 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 584 230 58 40 chr9 1214413 1214587 -116648040 + MER5B DNA MER1_type 2 178 0 261 268 16 71 chr9 1215172 1215299 -116647328 - MER5B DNA MER1_type 0 178 59 554 217 118 80 chr9 1215340 1215719 -116646908 + L1MC4a LINE L1 5523 5823 -298 243 309 18 36 chr9 1215739 1215849 -116646778 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 1516 206 22 43 chr9 1216124 1216493 -116646134 + MLT1A1 LTR MaLR 3 363 -2 273 292 75 50 chr9 1216766 1216927 -116645700 + MIR SINE MIR 70 234 -28 29 78 0 0 chr9 1217560 1217624 -116645003 + AT_rich Low_complexity Low_complexity 1 64 0 1224 189 45 89 chr9 1218098 1218480 -116644147 - MLT1A1 LTR MaLR 0 365 1 694 300 27 5 chr9 1218653 1218873 -116643754 - MIR SINE MIR -13 249 25 1898 161 6 3 chr9 1219033 1219344 -116643283 - AluJb SINE Alu 0 312 1 234 237 34 0 chr9 1222073 1222132 -116640495 + MIR3 SINE MIR 97 157 -51 463 175 88 0 chr9 1222218 1222332 -116640295 - Charlie8 DNA MER1_type -2257 160 37 536 265 21 48 chr9 1222341 1222530 -116640097 + L1MEc LINE L1 36 219 -6177 1932 152 7 0 chr9 1222573 1222869 -116639758 + AluSx SINE Alu 1 298 -14 5646 147 27 6 chr9 1223070 1224968 -116637659 - L1MA8 LINE L1 -137 6154 4213 1171 280 71 32 chr9 1225043 1225639 -116636988 + L2 LINE L2 2694 3313 0 15356 51 2 1 chr9 1226502 1229214 -116633413 - L1PA8 LINE L1 -6 6166 3441 10780 83 21 1 chr9 1229214 1230804 -116631823 + L1P LINE L1 2856 4478 -1668 470 276 37 22 chr9 1230965 1231099 -116631528 - L2 LINE L2 -1 3271 3136 195 316 76 59 chr9 1231387 1231624 -116631003 - L2 LINE L2 -485 2829 2589 259 266 141 0 chr9 1231632 1231760 -116630867 - MER117 DNA MER1_type -1 196 51 204 271 121 72 chr9 1231865 1232072 -116630555 - L2 LINE L2 -791 2523 2307 190 238 57 76 chr9 1232159 1232264 -116630363 - L2 LINE L2 -1017 2297 2195 478 206 46 69 chr9 1233135 1233674 -116628953 + L1ME1 LINE L1 5929 6099 -67 1929 148 107 3 chr9 1233288 1233653 -116628974 - MER57A LTR ERV1 0 403 1 319 152 22 196 chr9 1233653 1233770 -116628857 + L1MA10 LINE L1 6190 6326 -8 441 54 0 0 chr9 1233774 1233830 -116628797 + (CA)n Simple_repeat Simple_repeat 2 57 0 540 313 19 6 chr9 1235772 1235932 -116626695 - MIR SINE MIR -23 239 78 515 239 67 35 chr9 1236066 1236321 -116626306 + L1ME3A LINE L1 4774 5036 -1110 719 279 146 18 chr9 1236494 1237103 -116625524 + L1ME3A LINE L1 5258 5944 -226 312 304 87 36 chr9 1237148 1237286 -116625341 + L1ME3A LINE L1 5953 6097 -73 979 248 94 46 chr9 1238700 1239135 -116623492 - MLT1C LTR MaLR -8 459 4 335 302 86 17 chr9 1240337 1240453 -116622174 + L2 LINE L2 3141 3264 -8 343 307 69 35 chr9 1240540 1240830 -116621797 - LTR16C LTR ERVL 0 491 192 889 178 28 134 chr9 1241399 1241866 -116620761 + MLT1B LTR MaLR 1 444 -23 238 150 0 0 chr9 1241892 1241932 -116620695 + MLT1B LTR MaLR 349 388 -2 197 317 10 109 chr9 1241993 1242094 -116620533 + MIR SINE MIR 21 111 -97 432 308 83 0 chr9 1242960 1243080 -116619547 + MIR SINE MIR 17 146 -62 270 308 175 21 chr9 1243116 1243259 -116619368 + MIR SINE MIR 81 245 -17 2133 127 0 0 chr9 1243601 1243884 -116618743 - AluSx SINE Alu -27 285 3 302 325 25 44 chr9 1244494 1244654 -116617973 - MIR SINE MIR 0 262 106 487 210 70 38 chr9 1244852 1245009 -116617618 - MER112 DNA MER1_type -6 254 93 42 15 0 44 chr9 1245011 1245079 -116617548 + AT_rich Low_complexity Low_complexity 1 65 0 338 183 61 12 chr9 1245079 1245161 -116617466 - MER112 DNA MER1_type -174 86 1 272 314 97 57 chr9 1245277 1245649 -116616978 - L2 LINE L2 -412 2902 2516 250 273 281 7 chr9 1247369 1247508 -116615119 - MIR SINE MIR -27 235 59 183 323 71 0 chr9 1247613 1247712 -116614915 - L3b LINE CR1 -242 1341 1236 227 299 0 52 chr9 1249851 1249928 -116612699 - L2 LINE L2 0 3313 3241 1803 150 58 0 chr9 1251506 1251799 -116610828 - AluSx SINE Alu -2 310 1 535 330 42 0 chr9 1251825 1252016 -116610611 - MIR SINE MIR -8 254 56 503 256 173 0 chr9 1252857 1252990 -116609637 + MER5A DNA MER1_type 32 187 -2 400 168 0 161 chr9 1253796 1253814 -116608813 + L1M2 LINE L1 5407 5426 -865 2185 117 3 13 chr9 1253814 1254148 -116608479 + AluSx SINE Alu 1 312 0 400 168 0 161 chr9 1254148 1254174 -116608453 + L1M2 LINE L1 5426 5455 -836 1852 156 12 23 chr9 1254174 1254520 -116608107 + L1PB4 LINE L1 5815 6156 0 400 168 0 161 chr9 1254520 1254611 -116608016 + L1M2 LINE L1 5455 5521 -770 502 245 129 31 chr9 1254632 1254795 -116607832 - L2 LINE L2 0 3313 3135 191 382 83 0 chr9 1254939 1255083 -116607544 + MIR3 SINE MIR 38 193 -15 1566 228 52 29 chr9 1255241 1255726 -116606901 + MLT1D LTR MaLR 6 386 -4 303 212 71 12 chr9 1255728 1255813 -116606814 + MLT1I LTR MaLR 61 150 -259 2126 185 15 37 chr9 1256023 1256487 -116606140 - MLT2B1 LTR ERVL -64 456 3 248 281 53 35 chr9 1256492 1256606 -116606021 + MLT1I LTR MaLR 256 371 -38 248 288 91 23 chr9 1256808 1256940 -116605687 + MER103 DNA DNA 2 142 -24 891 250 29 16 chr9 1258976 1259220 -116603407 + MLT1H1 LTR MaLR 307 553 -2 192 167 0 0 chr9 1259457 1259487 -116603140 + L2 LINE L2 3233 3262 -51 731 272 83 48 chr9 1259496 1259954 -116602673 - L2 LINE L2 -117 3196 2719 673 167 233 17 chr9 1262021 1262201 -116600426 + MER20 DNA MER1_type 1 219 0 4391 155 37 34 chr9 1262202 1263092 -116599535 - MER54A LTR ERVL -1 900 8 243 61 0 0 chr9 1263149 1263182 -116599445 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 187 316 26 26 chr9 1263264 1263340 -116599287 + L2 LINE L2 2712 2787 -527 431 297 116 7 chr9 1263458 1263613 -116599014 + MIR SINE MIR 10 181 -81 182 301 86 49 chr9 1264246 1264409 -116598218 + L2 LINE L2 2841 3009 -263 247 286 163 7 chr9 1264896 1265043 -116597584 + MIR SINE MIR 93 262 0 479 307 49 13 chr9 1265800 1266025 -116596602 - Charlie8 DNA MER1_type -2184 233 1 2196 115 36 39 chr9 1266067 1266431 -116596196 + THE1B LTR MaLR 1 363 -1 274 284 7 97 chr9 1267068 1267223 -116595404 + MLT1J LTR MaLR 136 276 -235 2327 289 42 24 chr9 1267225 1268234 -116594393 - MER69B DNA AcHobo -199 1027 1 674 321 91 19 chr9 1268536 1269010 -116593617 - MLT1G1 LTR MaLR -13 582 75 196 279 0 0 chr9 1269117 1269160 -116593467 + L2 LINE L2 3261 3303 -10 1761 179 3 38 chr9 1269250 1269569 -116593058 + AluJo SINE Alu 1 308 -4 264 261 43 54 chr9 1270631 1270723 -116591904 - L3 LINE CR1 -12 1565 1475 3476 265 106 35 chr9 1272771 1272935 -116589692 - L2 LINE L2 0 3313 3162 2333 163 89 0 chr9 1272935 1273153 -116589474 - MSTA LTR MaLR 0 428 231 273 57 0 0 chr9 1273153 1273188 -116589439 + (TGGGGG)n Simple_repeat Simple_repeat 5 39 0 2333 163 89 0 chr9 1273188 1273362 -116589265 - MSTA LTR MaLR -197 231 1 3476 265 106 35 chr9 1273362 1274865 -116587762 - L2 LINE L2 -151 3162 1518 222 37 0 0 chr9 1274912 1274939 -116587688 + (TG)n Simple_repeat Simple_repeat 2 28 0 184 344 122 28 chr9 1275304 1275696 -116586931 + L2 LINE L2 2829 3257 -15 493 263 73 39 chr9 1275713 1275918 -116586709 + HAL1 LINE L1 1 212 -2295 2543 264 145 57 chr9 1275986 1276209 -116586418 + HAL1 LINE L1 602 804 -1703 1580 170 7 7 chr9 1276209 1276479 -116586148 - L1PA16 LINE L1 0 6166 5897 2543 264 145 57 chr9 1276479 1277991 -116584636 + HAL1 LINE L1 804 2491 -16 324 272 120 27 chr9 1279242 1279379 -116583248 - MIR3 SINE MIR -23 185 33 1076 316 74 20 chr9 1279887 1280374 -116582253 - LTR33 LTR ERVL -8 513 1 1741 216 48 11 chr9 1280450 1280802 -116581825 + MLT1A1 LTR MaLR 1 365 0 4343 145 2 3 chr9 1281435 1282071 -116580556 - MER41B LTR ERV1 0 635 1 473 151 151 0 chr9 1282175 1282281 -116580346 - MIR SINE MIR -85 177 56 268 290 107 30 chr9 1282361 1282492 -116580135 + MIR SINE MIR 117 257 -5 * 630 256 113 10 chr9 1282482 1282677 -116579950 + MIR SINE MIR 11 225 -37 1039 313 35 28 chr9 1282914 1283314 -116579313 + LTR16A LTR ERVL 26 428 -22 5611 301 70 57 chr9 1283326 1284963 -116577664 + HERV16 LTR ERVL 1 1830 -3166 742 181 7 29 chr9 1284963 1285101 -116577526 + FLAM_A SINE Alu 8 142 0 5611 301 70 57 chr9 1285101 1286377 -116576250 + HERV16 LTR ERVL 1830 3089 -1907 858 286 107 39 chr9 1286525 1287214 -116575413 + HERV16 LTR ERVL 3328 4063 -1701 891 350 68 29 chr9 1287551 1288425 -116574202 + HERV16 LTR ERVL 4419 5326 -328 1031 324 58 15 chr9 1288592 1289002 -116573625 + LTR16A LTR ERVL 23 450 0 331 338 60 25 chr9 1289328 1289529 -116573098 - MIR SINE MIR -26 236 29 1218 231 86 52 chr9 1291125 1291510 -116571117 + MER93a LTR ERV1 1 398 -4 656 225 96 28 chr9 1292537 1292715 -116569912 + MER58C DNA MER1_type 26 215 0 487 281 97 17 chr9 1292718 1292956 -116569671 + MIR SINE MIR 5 261 -1 365 254 21 14 chr9 1292978 1293120 -116569507 + (TA)n Simple_repeat Simple_repeat 1 143 0 216 0 0 0 chr9 1293222 1293246 -116569381 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 398 25 88 0 chr9 1293245 1293325 -116569302 + (TA)n Simple_repeat Simple_repeat 2 88 0 2460 76 0 0 chr9 1294731 1295033 -116567594 + AluSc SINE Alu 1 302 -7 3498 124 24 10 chr9 1295037 1295546 -116567081 - L1PA15 LINE L1 -13 6152 5637 4307 155 65 21 chr9 1295550 1296314 -116566313 - L1MA7 LINE L1 0 6291 5485 2106 122 10 0 chr9 1296314 1296609 -116566018 - AluSp SINE Alu -13 300 3 4307 155 65 21 chr9 1296609 1296687 -116565940 - L1MA7 LINE L1 -806 5485 5412 1350 152 5 9 chr9 1296758 1296968 -116565659 + AluJb SINE Alu 86 294 -18 22 0 0 0 chr9 1296973 1296995 -116565632 + AT_rich Low_complexity Low_complexity 1 22 0 243 205 0 121 chr9 1297272 1297355 -116565272 + LTR67 LTR ERVL 468 540 -17 206 268 56 28 chr9 1297893 1297964 -116564663 + L2 LINE L2 3183 3255 -17 26 0 0 0 chr9 1298718 1298744 -116563883 + AT_rich Low_complexity Low_complexity 1 26 0 30930 114 20 57 chr9 1298794 1305197 -116557430 + L1PA8 LINE L1 12 6166 -6 1551 191 150 24 chr9 1305727 1306140 -116556487 - MLT1C LTR MaLR 0 467 3 319 308 51 51 chr9 1306584 1306740 -116555887 + MER5A DNA MER1_type 33 188 -1 5549 195 38 1 chr9 1308169 1309172 -116553455 - MER45B DNA AcHobo 0 1040 1 227 313 88 0 chr9 1309290 1309370 -116553257 + L2 LINE L2 3006 3092 -221 686 211 0 0 chr9 1309416 1309539 -116553088 - MER5A DNA MER1_type -66 123 1 359 321 60 28 chr9 1309539 1309752 -116552875 + L2 LINE L2 3094 3313 0 1771 191 38 24 chr9 1310242 1310614 -116552013 - MLT1B LTR MaLR -6 384 8 204 314 0 29 chr9 1310620 1310690 -116551937 - MER5A DNA MER1_type -103 86 19 221 56 0 28 chr9 1312993 1313029 -116549598 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 16372 31 1 6 chr9 1313029 1313802 -116548825 - L1PA3 LINE L1 -24 6131 5356 2892 10 0 0 chr9 1313802 1314112 -116548515 - AluYa5 SINE Alu -1 310 1 16372 31 1 6 chr9 1314112 1316035 -116546592 - L1PA3 LINE L1 -799 5356 3441 4538 37 0 3 chr9 1316026 1316593 -116546034 + L1PA3 LINE L1 2848 3412 -2734 * 327 322 49 63 chr9 1316835 1316978 -116545649 - L2 LINE L2 -3 3269 3129 1213 122 0 0 chr9 1317980 1318144 -116544483 + AluSg/x SINE Alu 131 294 -16 250 200 57 43 chr9 1318361 1318431 -116544196 - MIR SINE MIR -9 253 183 236 237 158 26 chr9 1318529 1318643 -116543984 + LTR33 LTR ERVL 116 244 -277 775 259 138 50 chr9 1318814 1319134 -116543493 - MLT1J LTR MaLR -102 409 62 318 276 150 8 chr9 1319220 1319347 -116543280 - MIR SINE MIR -93 169 25 260 325 43 17 chr9 1319646 1319763 -116542864 + MIR SINE MIR 16 135 -73 221 286 25 99 chr9 1321700 1321861 -116540766 + L3 LINE CR1 1139 1287 -290 199 315 69 81 chr9 1321857 1322032 -116540595 + L2 LINE L2 3023 3230 -83 * 23 54 0 0 chr9 1322032 1322069 -116540558 + AT_rich Low_complexity Low_complexity 1 37 0 199 315 69 81 chr9 1322069 1322152 -116540475 + L2 LINE L2 3230 3313 0 22 0 0 0 chr9 1324222 1324244 -116538383 + AT_rich Low_complexity Low_complexity 1 22 0 261 320 67 5 chr9 1325574 1325768 -116536859 - L1MEd LINE L1 -4915 1204 999 826 164 15 0 chr9 1325775 1325909 -116536718 - FRAM SINE Alu -3 173 38 283 352 141 12 chr9 1327060 1327316 -116535311 + L2 LINE L2 2982 3270 -2 7300 40 28 0 chr9 1327602 1328915 -116533712 - L1PA4 LINE L1 0 6155 4824 12067 72 15 0 chr9 1328915 1330551 -116532076 - L1P LINE L1 -4485 1661 1 338 245 71 0 chr9 1331303 1331401 -116531226 - MIR3 SINE MIR -6 202 98 43 47 0 0 chr9 1332544 1332608 -116530019 + AT_rich Low_complexity Low_complexity 1 64 0 327 270 155 34 chr9 1333080 1333228 -116529399 + MIR SINE MIR 90 255 -7 246 182 0 0 chr9 1334492 1334536 -116528091 - MER66B LTR ERV1 -142 344 301 1885 251 45 38 chr9 1335937 1336361 -116526266 - HsTC2a DNA Tc2 -1157 743 310 1668 187 33 3 chr9 1336361 1336661 -116525966 - AluJo SINE Alu -3 309 1 1885 251 45 38 chr9 1336661 1336948 -116525679 - HsTC2a DNA Tc2 -1590 310 27 262 299 46 0 chr9 1336989 1337076 -116525551 - L2 LINE L2 -231 3041 2951 326 340 70 22 chr9 1337761 1337946 -116524681 - L2 LINE L2 -406 2908 2715 2121 125 0 0 chr9 1338416 1338712 -116523915 + AluSx SINE Alu 1 296 -16 2110 126 3 0 chr9 1338923 1339224 -116523403 - AluSc SINE Alu -7 302 1 779 249 120 34 chr9 1339333 1339566 -116523061 - MIR SINE MIR -1 261 9 187 31 62 0 chr9 1341392 1341424 -116521203 + A-rich Low_complexity Low_complexity 2 35 0 495 311 119 11 chr9 1341534 1341711 -116520916 + MIR SINE MIR 23 218 -44 2085 128 0 13 chr9 1342521 1342825 -116519802 - AluSx SINE Alu -10 302 3 2364 101 3 0 chr9 1342966 1343274 -116519353 + AluSc SINE Alu 1 309 0 530 277 42 45 chr9 1343855 1344144 -116518483 + Charlie7 DNA MER1_type 1245 1532 -1080 1000 245 61 114 chr9 1344697 1344837 -116517790 - LTR16C LTR ERVL -2 489 343 2255 98 3 0 chr9 1344837 1345133 -116517494 + AluSx SINE Alu 1 297 -15 1000 245 61 114 chr9 1345133 1345481 -116517146 - LTR16C LTR ERVL -148 343 27 978 304 122 29 chr9 1345815 1346298 -116516329 + MLT1G1 LTR MaLR 1 528 -67 417 177 124 9 chr9 1346427 1346540 -116516087 + L1MD3 LINE L1 7670 7795 -200 413 352 82 15 chr9 1346778 1346974 -116515653 - MIR SINE MIR -52 210 2 225 224 40 7 chr9 1347162 1347317 -116515310 + (TA)n Simple_repeat Simple_repeat 1 160 0 2105 189 88 24 chr9 1347455 1348009 -116514618 - L1MD3 LINE L1 -10 7985 7396 409 189 14 0 chr9 1348009 1348083 -116514544 - MLT1F1 LTR MaLR -457 110 36 2009 138 3 3 chr9 1348449 1348746 -116513881 - AluJb SINE Alu -15 297 1 236 223 53 0 chr9 1348817 1348911 -116513716 + (TA)n Simple_repeat Simple_repeat 1 99 0 465 311 53 24 chr9 1348939 1349148 -116513479 - MIR SINE MIR -1 261 47 2705 94 13 5 chr9 1349448 1349820 -116512807 - THE1C LTR MaLR 0 375 1 465 62 0 0 chr9 1350078 1350143 -116512484 + (GA)n Simple_repeat Simple_repeat 2 66 0 224 364 91 8 chr9 1352096 1352228 -116510399 + MIR3 SINE MIR 60 202 -6 203 286 76 59 chr9 1353516 1353635 -116508992 - L3 LINE CR1 -31 1546 1426 432 274 35 30 chr9 1353662 1353863 -116508764 - Charlie8 DNA MER1_type -9 2408 2207 913 239 85 96 chr9 1353909 1354357 -116508270 - Charlie8 DNA MER1_type -1973 444 2 1181 206 0 26 chr9 1354367 1354595 -116508032 + MER58A DNA MER1_type 2 223 -1 262 267 13 13 chr9 1354631 1354706 -116507921 - L3 LINE CR1 -180 1397 1323 612 327 88 22 chr9 1355100 1355552 -116507075 + L2 LINE L2 2832 3313 0 351 277 119 0 chr9 1355908 1356009 -116506618 - MIR SINE MIR -62 146 34 6506 83 3 28 chr9 1356116 1356933 -116505694 - L1PA10 LINE L1 0 6168 5332 2274 103 0 3 chr9 1356933 1357233 -116505394 - AluY SINE Alu -12 299 1 6506 83 3 28 chr9 1357233 1358336 -116504291 - L1PA10 LINE L1 -836 5332 4284 1117 154 18 0 chr9 1358343 1358512 -116504115 + AluSg/x SINE Alu 132 303 -9 909 225 22 13 chr9 1358515 1358746 -116503881 + L1ME1 LINE L1 5891 6123 -43 202 319 26 73 chr9 1358815 1359007 -116503620 - MIR SINE MIR -57 205 19 741 273 80 8 chr9 1359118 1359356 -116503271 - MIR SINE MIR 0 262 8 831 249 131 24 chr9 1360057 1360386 -116502241 - L2 LINE L2 -1 3312 2949 650 378 114 0 chr9 1360533 1360927 -116501700 - L3 LINE CR1 -1104 473 35 332 285 115 6 chr9 1361011 1361176 -116501451 - L1ME4a LINE L1 -4 6117 5935 266 247 55 0 chr9 1362077 1362150 -116500477 + L2 LINE L2 3197 3273 -40 1038 315 57 25 chr9 1362194 1362670 -116499957 - L2 LINE L2 0 3313 2823 980 235 111 60 chr9 1362667 1363080 -116499547 - L2 LINE L2 -876 2438 2005 * 241 313 107 0 chr9 1363855 1363967 -116498660 - MIR SINE MIR -70 192 69 239 222 0 0 chr9 1364640 1364703 -116497924 - LTR66 LTR ERVL -149 461 399 186 43 0 0 chr9 1364711 1364734 -116497893 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 27 29 0 0 chr9 1365465 1365499 -116497128 + AT_rich Low_complexity Low_complexity 1 34 0 351 362 74 23 chr9 1366320 1366804 -116495823 - L2 LINE L2 -914 2400 1892 204 367 22 11 chr9 1367139 1367229 -116495398 + L2 LINE L2 3168 3258 -14 260 333 55 56 chr9 1367269 1367470 -116495157 - MIR SINE MIR -5 203 1 468 286 64 71 chr9 1368163 1368446 -116494181 + L2 LINE L2 2992 3272 0 470 287 6 43 chr9 1368563 1368727 -116493900 - MIR SINE MIR -40 222 65 296 188 14 0 chr9 1368806 1368875 -116493752 + CT-rich Low_complexity Low_complexity 4 73 0 262 306 41 10 chr9 1368907 1369005 -116493622 + MIR SINE MIR 54 154 -108 424 137 1 35 chr9 1369093 1369182 -116493445 - L1MC3 LINE L1 -15 7770 6238 508 261 113 54 chr9 1369185 1369388 -116493239 - MIR SINE MIR -46 216 2 1577 201 35 32 chr9 1370595 1370968 -116491659 + MLT1A2 LTR MaLR 1 374 0 21 57 0 0 chr9 1372757 1372792 -116489835 + AT_rich Low_complexity Low_complexity 1 35 0 1000 294 70 25 chr9 1372882 1373610 -116489017 + HAL1b LINE L1 89 849 -499 343 212 26 26 chr9 1373638 1373751 -116488876 - HAL1b LINE L1 -341 1007 895 1434 208 91 32 chr9 1373760 1374168 -116488459 - Charlie4a DNA MER1_type -63 445 14 1537 174 68 50 chr9 1376133 1376455 -116486172 + MLT2D LTR ERVL 73 480 -35 414 0 0 0 chr9 1376455 1376501 -116486126 + (CA)n Simple_repeat Simple_repeat 1 46 0 1537 174 68 50 chr9 1376501 1376538 -116486089 + MLT2D LTR ERVL 480 515 0 710 282 102 50 chr9 1376802 1377320 -116485307 + L2 LINE L2 527 1071 -2243 948 199 22 0 chr9 1377840 1378018 -116484609 - MER3 DNA MER1_type -19 190 9 831 196 136 11 chr9 1378018 1378202 -116484425 + MER58C DNA MER1_type 1 207 -8 206 379 70 9 chr9 1378574 1378788 -116483839 - L2 LINE L2 -234 3038 2812 201 39 0 0 chr9 1380853 1380879 -116481748 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 3071 166 35 35 chr9 1380880 1381506 -116481121 - MER73 LTR ERVL -18 626 1 3613 119 11 0 chr9 1381678 1382216 -116480411 - L1PA13 LINE L1 -56 6107 5564 2583 32 0 10 chr9 1382482 1382795 -116479832 + AluY SINE Alu 1 310 -1 303 272 174 0 chr9 1382885 1382977 -116479650 + MIR SINE MIR 126 233 -29 216 261 0 46 chr9 1383186 1383251 -116479376 + MIR SINE MIR 157 218 -44 10298 183 48 18 chr9 1383579 1386164 -116476463 - L1MA4A LINE L1 -5 6161 3654 1083 45 0 0 chr9 1386164 1386296 -116476331 - L1PA3 LINE L1 -3 6152 6021 10298 183 48 18 chr9 1386296 1386504 -116476123 - L1MA4A LINE L1 -2512 3654 3454 2006 118 37 0 chr9 1386504 1386800 -116475827 - AluSx SINE Alu -5 307 1 10298 183 48 18 chr9 1386800 1387211 -116475416 - L1MA4A LINE L1 -2712 3454 2849 2184 238 70 57 chr9 1387238 1388378 -116474249 - L1ME LINE L1 -369 5866 4676 279 100 0 0 chr9 1388378 1388418 -116474209 + U5 snRNA snRNA 3 42 -74 2184 238 70 57 chr9 1388418 1388653 -116473974 - L1ME LINE L1 -1559 4676 4446 4690 220 72 32 chr9 1388666 1390399 -116472228 - L1 LINE L1 -2659 4906 3100 2854 272 42 11 chr9 1390411 1391456 -116471171 - L1ME LINE L1 -1802 4413 3337 460 155 0 21 chr9 1392065 1392162 -116470465 - L1MA10 LINE L1 0 6334 6240 268 185 77 0 chr9 1392170 1392235 -116470392 - L1P LINE L1 -2890 3256 3187 1667 248 83 17 chr9 1392248 1392997 -116469630 - L1ME LINE L1 -3143 3072 2275 665 167 32 24 chr9 1393024 1393150 -116469477 + FLAM_C SINE Alu 10 136 -7 2285 94 0 0 chr9 1393152 1393438 -116469189 + AluSp SINE Alu 1 286 -27 1936 83 0 0 chr9 1393438 1393702 -116468925 - THE1B-int LTR MaLR -1316 264 1 2014 132 79 15 chr9 1393702 1394044 -116468583 - THE1B LTR MaLR 0 364 1 480 272 230 25 chr9 1394142 1394643 -116467984 - L1ME LINE L1 -4925 1471 1074 1912 137 20 3 chr9 1394643 1394935 -116467692 - AluSx SINE Alu -15 297 1 480 272 230 25 chr9 1394935 1395149 -116467478 - L1ME LINE L1 -5322 1074 609 1802 211 87 27 chr9 1395295 1395849 -116466778 + L1MC4 LINE L1 7443 8029 -13 346 299 35 62 chr9 1397303 1397447 -116465180 - MIR SINE MIR -108 154 15 721 330 83 29 chr9 1397518 1398000 -116464627 - L2 LINE L2 -2 3311 2804 239 211 0 19 chr9 1398049 1398101 -116464526 + L2 LINE L2 2715 2765 -549 253 364 76 0 chr9 1398674 1398792 -116463835 + L2 LINE L2 3184 3310 -3 199 234 0 117 chr9 1398801 1398878 -116463749 + MIR SINE MIR 58 125 -83 612 283 31 22 chr9 1398949 1399175 -116463452 - MIR SINE MIR -17 245 18 2226 90 6 40 chr9 1399227 1399589 -116463038 - AluY SINE Alu 0 351 1 4276 178 79 13 chr9 1399687 1400954 -116461673 - L1MA8 LINE L1 -4 6287 4936 2462 136 45 12 chr9 1401952 1402370 -116460257 + MSTB1 LTR MaLR 1 432 0 221 344 0 0 chr9 1402421 1402485 -116460142 - MIR SINE MIR -60 148 85 251 222 19 0 chr9 1402557 1402667 -116459960 + CT-rich Low_complexity Low_complexity 1 112 0 210 147 13 53 chr9 1402700 1402775 -116459852 + CT-rich Low_complexity Low_complexity 2 73 0 27 73 0 0 chr9 1403018 1403073 -116459554 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr9 1403121 1403152 -116459475 + AT_rich Low_complexity Low_complexity 1 31 0 1253 124 21 5 chr9 1403355 1403549 -116459078 - L1PA13 LINE L1 -58 6105 5909 1386 247 92 13 chr9 1403593 1404193 -116458434 + MER114 LTR ERV 1 647 -1 598 229 52 60 chr9 1404484 1404733 -116457894 - L1MD2 LINE L1 -17 6342 6096 1196 221 56 21 chr9 1404734 1405065 -116457562 - Tigger7 DNA MER2_type 0 2491 2 1621 246 78 32 chr9 1405066 1405563 -116457064 - L1MD2 LINE L1 -263 6096 5577 1127 233 31 24 chr9 1405766 1406054 -116456573 - L1MD2 LINE L1 -651 5591 5302 2121 50 28 7 chr9 1406056 1406338 -116456289 - L1PA4 LINE L1 0 6155 5868 559 0 15 0 chr9 1406338 1406404 -116456223 + L1PA4 LINE L1 5797 5863 -292 1758 259 56 17 chr9 1406409 1407072 -116455555 - L1MD2 LINE L1 -842 5304 4616 3349 191 59 76 chr9 1407100 1408158 -116454469 - L1MB8 LINE L1 0 6178 5115 183 42 0 0 chr9 1408158 1408182 -116454445 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3349 191 59 76 chr9 1408182 1408237 -116454390 - L1MB8 LINE L1 -1063 5115 5061 * 3382 200 35 15 chr9 1408233 1409422 -116453205 + L1MB5 LINE L1 4699 5953 -225 4357 152 53 13 chr9 1409422 1410216 -116452411 + LTR1B LTR ERV1 1 826 0 3382 200 35 15 chr9 1410216 1410428 -116452199 + L1MB5 LINE L1 5953 6159 -19 855 345 69 35 chr9 1411244 1411792 -116450835 - L3 LINE CR1 -1 1576 1010 386 325 24 16 chr9 1411814 1411937 -116450690 + L2 LINE L2 3141 3264 -8 181 347 0 14 chr9 1412450 1412522 -116450105 - MIR SINE MIR -118 90 20 1929 277 43 5 chr9 1414325 1414910 -116447717 - L1ME3A LINE L1 -23 6147 5541 1932 128 11 3 chr9 1415233 1415515 -116447112 + AluSx SINE Alu 4 287 -25 201 268 0 0 chr9 1415808 1415849 -116446778 - L2 LINE L2 -14 3258 3218 482 239 127 0 chr9 1417156 1417290 -116445337 + MER69 DNA AcHobo 6 156 -1070 1342 99 16 5 chr9 1417312 1417504 -116445123 - AluSc SINE Alu -12 297 104 230 304 64 60 chr9 1417538 1417788 -116444839 - L2 LINE L2 -205 3067 2817 950 88 22 15 chr9 1419389 1419526 -116443101 + MER85 DNA T2_type 1 138 -1 1726 168 42 3 chr9 1419554 1419840 -116442787 - MER50-int LTR ERV1 -6902 303 7 3891 129 32 71 chr9 1419840 1420591 -116442036 - MER50 LTR ERV1 -12 722 1 542 252 60 33 chr9 1420767 1420918 -116441709 + MIR SINE MIR 3 157 -105 21 36 0 0 chr9 1420986 1421014 -116441613 + AT_rich Low_complexity Low_complexity 1 28 0 775 195 15 135 chr9 1421079 1421413 -116441214 - TAR1 Satellite telomeric -1815 296 3 * 1459 186 49 34 chr9 1421208 1421558 -116441069 - LTR60 LTR ERV1 -3 583 229 709 169 83 156 chr9 1421558 1421859 -116440768 - LTR60 LTR ERV1 -307 279 1 792 142 0 8 chr9 1422524 1422644 -116439983 + THE1C LTR MaLR 1 119 -256 * 1049 82 0 0 chr9 1422639 1422773 -116439854 + THE1C LTR MaLR 242 375 0 1731 243 69 40 chr9 1424174 1424882 -116437745 - MER20B DNA MER1_type -5 778 24 1289 252 145 24 chr9 1424882 1425295 -116437332 - LTR16B LTR ERVL 0 464 2 3929 135 64 70 chr9 1426386 1427170 -116435457 + LTR1 LTR ERV1 7 785 0 348 234 58 88 chr9 1428523 1428660 -116433967 + L2 LINE L2 3122 3254 -18 667 329 82 47 chr9 1429089 1429448 -116433179 - MLT1K LTR MaLR -17 571 185 1663 155 59 98 chr9 1429448 1429854 -116432773 + MLT1B LTR MaLR 1 390 0 667 329 82 47 chr9 1429854 1430029 -116432598 - MLT1K LTR MaLR -403 185 18 3011 141 22 59 chr9 1430623 1430854 -116431773 + MER4B LTR ERV1 1 239 -371 1180 122 168 0 chr9 1430854 1431050 -116431577 + MER30 DNA MER1_type 1 229 -1 3011 141 22 59 chr9 1431050 1431414 -116431213 + MER4B LTR ERV1 239 574 -36 227 296 61 10 chr9 1431616 1431714 -116430913 + LTR33 LTR ERVL 112 214 -307 555 266 44 25 chr9 1431768 1431971 -116430656 + LTR33 LTR ERVL 308 514 -7 531 246 10 74 chr9 1432082 1432285 -116430342 + MIR SINE MIR 63 252 -10 930 303 92 10 chr9 1432331 1432731 -116429896 - LTR16A LTR ERVL 0 450 18 1694 310 63 31 chr9 1433050 1434087 -116428540 - HERV16 LTR ERVL -300 5026 4066 512 342 38 14 chr9 1434423 1434804 -116427823 - HERV16 LTR ERVL -2060 3704 3288 815 122 0 0 chr9 1485123 1485246 -116377381 + MLT2A2 LTR ERVL 301 423 -30 237 322 26 0 chr9 1485281 1485396 -116377231 - LTR40c LTR ERVL -177 288 171 6364 168 27 7 chr9 1486062 1488260 -116374367 + L1PB3 LINE L1 3911 6153 -1 288 301 76 51 chr9 1489321 1489504 -116373123 + MIR SINE MIR 37 220 -42 495 245 1 2 chr9 1490463 1490607 -116372020 + L1MA10 LINE L1 6003 6304 -23 809 233 38 38 chr9 1490612 1490904 -116371723 - LTR13 LTR ERVK -715 292 1 620 111 0 0 chr9 1490904 1490993 -116371634 + MER4E LTR ERV1 129 217 -562 788 93 0 0 chr9 1490991 1491098 -116371529 + MER4E LTR ERV1 660 766 0 898 226 19 33 chr9 1491142 1491354 -116371273 - MER63A DNA MER1_type 0 210 2 215 227 0 0 chr9 1491354 1491398 -116371229 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 197 211 18 0 chr9 1491415 1491472 -116371155 + (TG)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr9 1491633 1491656 -116370971 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr9 1491785 1491827 -116370800 + AT_rich Low_complexity Low_complexity 1 42 0 540 273 68 18 chr9 1492276 1492455 -116370172 - MIR SINE MIR -51 211 20 4199 189 40 9 chr9 1494156 1495506 -116367121 + L1MB5 LINE L1 4789 6174 0 244 182 18 36 chr9 1495860 1495915 -116366712 + (TAGG)n Simple_repeat Simple_repeat 4 57 0 2277 198 4 26 chr9 1495915 1496384 -116366243 - MLT2B2 LTR ERVL -48 467 9 308 102 0 17 chr9 1496384 1496443 -116366184 - ERVL-B2 LTR ERVL -8 5756 5699 * 1096 172 5 15 chr9 1496441 1496644 -116365983 - ERVL LTR ERVL -1423 4341 4141 41015 48 4 1 chr9 1497626 1503760 -116358867 + L1PA4 LINE L1 4 6155 0 302 300 100 19 chr9 1503907 1504067 -116358560 + L1ME4a LINE L1 5255 5427 -932 514 302 56 28 chr9 1504143 1504501 -116358126 + L1ME4a LINE L1 5566 5933 -188 759 195 7 7 chr9 1504855 1505004 -116357623 + MER106B DNA MER1_type 7 155 -904 4624 178 30 51 chr9 1505033 1505193 -116357434 - L1MA9 LINE L1 0 6548 6386 1720 99 114 33 chr9 1505193 1505466 -116357161 - AluSg SINE Alu -15 295 1 4624 178 30 51 chr9 1505466 1507478 -116355149 - L1MA9 LINE L1 -162 6386 4425 905 217 54 27 chr9 1507659 1508192 -116354435 - L1MA9 LINE L1 -4177 2206 1146 40511 38 21 1 chr9 1508210 1514239 -116348388 - L1PA3 LINE L1 -1 6154 3 2335 257 46 33 chr9 1514239 1515555 -116347072 - L1M3c LINE L1 -4739 2298 958 1359 193 0 7 chr9 1515555 1515829 -116346798 - L1M3c LINE L1 -6758 272 1 24 77 0 0 chr9 1515841 1515893 -116346734 + AT_rich Low_complexity Low_complexity 1 52 0 240 100 0 0 chr9 1516310 1516350 -116346277 + (CA)n Simple_repeat Simple_repeat 2 41 0 739 223 81 12 chr9 1517515 1517642 -116344985 - L1MD3 LINE L1 -2 7993 7876 2090 141 0 0 chr9 1517642 1517946 -116344681 + AluSx SINE Alu 1 304 -8 739 223 81 12 chr9 1517946 1518065 -116344562 - L1MD3 LINE L1 -119 7876 7730 462 303 8 8 chr9 1518364 1518486 -116344141 - MIR3 SINE MIR -29 179 58 236 170 19 0 chr9 1518549 1518602 -116344025 + (TA)n Simple_repeat Simple_repeat 2 55 0 314 341 8 38 chr9 1519490 1519622 -116343005 + MIR SINE MIR 8 135 -73 498 228 128 13 chr9 1520048 1520197 -116342430 + MLT1D LTR MaLR 1 166 -339 372 174 76 0 chr9 1520210 1520302 -116342325 + MLT1D LTR MaLR 407 505 0 325 325 118 14 chr9 1520607 1520819 -116341808 + MIR SINE MIR 14 247 -15 262 316 53 0 chr9 1520933 1521009 -116341618 - L2 LINE L2 -35 3278 3199 2276 101 29 9 chr9 1521739 1522087 -116340540 - L1PA7 LINE L1 -1 6153 5799 1157 266 91 54 chr9 1522130 1522645 -116339982 - L1M4 LINE L1 -5856 686 153 * 22100 50 19 1 chr9 1522643 1526901 -116335726 - L1PA5 LINE L1 0 6154 1834 373 205 13 0 chr9 1527001 1527079 -116335548 + L1 LINE L1 4138 4216 -1930 1426 183 9 68 chr9 1527102 1527425 -116335202 - MLT2A2 LTR ERVL -149 304 1 264 277 42 42 chr9 1527442 1527561 -116335066 + LTR40b LTR ERVL 305 423 -39 238 154 77 43 chr9 1528409 1528526 -116334101 + (TTAA)n Simple_repeat Simple_repeat 4 124 0 182 330 75 32 chr9 1528539 1528633 -116333994 - L2 LINE L2 -17 3255 3158 398 332 108 56 chr9 1528796 1529064 -116333563 + L2 LINE L2 2987 3268 -4 2711 210 46 48 chr9 1529162 1529996 -116332631 + L1ME1 LINE L1 5254 6243 -91 201 154 0 0 chr9 1530007 1530046 -116332581 + (TG)n Simple_repeat Simple_repeat 2 40 0 28 86 0 0 chr9 1530804 1530874 -116331753 + AT_rich Low_complexity Low_complexity 1 70 0 207 100 0 0 chr9 1531088 1531118 -116331509 + (TG)n Simple_repeat Simple_repeat 1 30 0 266 296 0 0 chr9 1531118 1531216 -116331411 + GA-rich Low_complexity Low_complexity 2 99 0 467 360 7 7 chr9 1532047 1532200 -116330427 + MIR SINE MIR 33 185 -77 1194 131 23 0 chr9 1532844 1533106 -116329521 - L1MA10 LINE L1 -568 5766 5420 2527 184 19 25 chr9 1533106 1533672 -116328955 + L1MA10 LINE L1 5762 6324 -10 224 240 53 27 chr9 1533872 1533947 -116328680 - MIR SINE MIR -30 232 156 433 336 159 17 chr9 1534008 1534424 -116328203 - L2 LINE L2 0 3313 2839 758 263 56 117 chr9 1535059 1535596 -116327031 + LTR33 LTR ERVL 3 506 -15 398 236 154 0 chr9 1535678 1535788 -116326839 - MIR SINE MIR -99 163 37 1917 275 91 15 chr9 1536573 1537491 -116325136 - L1ME3A LINE L1 -5 6165 5175 376 183 238 16 chr9 1537636 1537762 -116324865 + MER21B LTR ERV1 662 815 -48 560 186 180 0 chr9 1537824 1537985 -116324642 + L1MC5 LINE L1 7712 7901 -60 481 335 17 30 chr9 1538003 1538239 -116324388 - L2 LINE L2 -1480 1834 1602 732 292 83 74 chr9 1538265 1538548 -116324079 - L2 LINE L2 -340 2974 2695 417 20 0 0 chr9 1538548 1538598 -116324029 + (TG)n Simple_repeat Simple_repeat 2 51 0 732 292 83 74 chr9 1538598 1538724 -116323903 - L2 LINE L2 -619 2695 2558 1583 249 46 20 chr9 1538724 1539177 -116323450 + MLT1C LTR MaLR 1 465 -2 732 292 83 74 chr9 1539177 1539211 -116323416 - L2 LINE L2 -756 2558 2526 58 102 0 0 chr9 1539211 1539416 -116323211 + AT_rich Low_complexity Low_complexity 1 205 0 403 267 91 91 chr9 1539546 1539864 -116322763 + L1ME4a LINE L1 4669 4986 -1160 42951 48 4 1 chr9 1539970 1546104 -116316523 + L1PA4 LINE L1 4 6155 0 228 300 9 9 chr9 1546301 1546411 -116316216 + L1P LINE L1 5318 5427 -724 597 304 50 22 chr9 1546487 1546845 -116315782 + L1ME4a LINE L1 5566 5933 -188 810 195 7 7 chr9 1547199 1547348 -116315279 + MER106B DNA MER1_type 7 155 -904 4951 178 30 51 chr9 1547377 1547537 -116315090 - L1MA9 LINE L1 0 6548 6386 1704 99 114 33 chr9 1547537 1547810 -116314817 - AluSg SINE Alu -15 295 1 4951 178 30 51 chr9 1547810 1549822 -116312805 - L1MA9 LINE L1 -162 6386 4425 972 227 66 32 chr9 1549810 1550536 -116312091 - L1MA9 LINE L1 -4177 2206 1146 * 40220 63 12 5 chr9 1550554 1556653 -116305974 - L1PA2 LINE L1 -1 6154 11 490 256 17 59 chr9 1556673 1556906 -116305721 - L1ME LINE L1 -690 5480 5256 314 304 81 40 chr9 1556915 1557063 -116305564 + MLT1D LTR MaLR 3 156 -349 1441 240 58 0 chr9 1557091 1557525 -116305102 + L1MB5 LINE L1 4114 4572 -1574 4433 179 21 26 chr9 1557535 1558441 -116304186 + L1MB5 LINE L1 5254 6154 -20 478 285 60 35 chr9 1558504 1558704 -116303923 - MLT1J2 LTR MaLR -241 209 5 242 297 66 22 chr9 1558707 1558798 -116303829 + MER5A DNA MER1_type 93 187 -2 359 21 21 0 chr9 1559767 1559815 -116302812 + (CA)n Simple_repeat Simple_repeat 2 50 0 3611 208 49 76 chr9 1559862 1559954 -116302673 + L1MB8 LINE L1 4021 4114 -2032 3625 72 4 6 chr9 1559954 1560441 -116302186 - L1PA8 LINE L1 -3 6169 5684 3611 208 49 76 chr9 1560441 1561645 -116300982 + L1MB8 LINE L1 4114 5282 -864 23 78 0 0 chr9 1561646 1561697 -116300930 + AT_rich Low_complexity Low_complexity 1 51 0 3187 192 74 44 chr9 1561752 1562618 -116300009 + L1MB8 LINE L1 5285 6176 -2 243 0 0 0 chr9 1562741 1562768 -116299859 + (TG)n Simple_repeat Simple_repeat 2 28 0 1496 208 38 38 chr9 1563372 1563719 -116298908 - MLT1A1 LTR MaLR 0 365 19 418 296 13 72 chr9 1563784 1563936 -116298691 + MIR SINE MIR 76 218 -44 5417 128 20 9 chr9 1564105 1564996 -116297631 - L1PB3 LINE L1 0 6154 5254 338 336 41 0 chr9 1565068 1565190 -116297437 - MIR3 SINE MIR -21 187 61 184 156 47 94 chr9 1565844 1565908 -116296719 + MIR SINE MIR 70 130 -132 193 311 0 0 chr9 1566268 1566313 -116296314 + MIR SINE MIR 196 240 -22 * 209 308 0 0 chr9 1566279 1566331 -116296296 + L2 LINE L2 3252 3303 -10 1958 145 7 0 chr9 1568059 1568355 -116294272 + AluSx SINE Alu 1 298 -14 411 196 38 0 chr9 1568359 1568517 -116294110 + (TA)n Simple_repeat Simple_repeat 2 165 0 469 211 11 0 chr9 1568532 1568622 -116294005 - LTR16C LTR ERVL -2 489 399 495 235 38 0 chr9 1571250 1571382 -116291245 - Charlie4 DNA MER1_type -1 1960 1824 911 182 21 42 chr9 1572344 1572536 -116290091 - MER5A DNA MER1_type -1 188 1 192 200 0 0 chr9 1572733 1572778 -116289849 + T-rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr9 1575160 1575185 -116287442 + AT_rich Low_complexity Low_complexity 1 25 0 595 242 149 6 chr9 1576085 1576246 -116286381 - MER5A DNA MER1_type 0 189 6 26 0 0 0 chr9 1576842 1576868 -116285759 + AT_rich Low_complexity Low_complexity 1 26 0 640 87 39 0 chr9 1577171 1577275 -116285352 + L1MA3 LINE L1 6198 6305 0 593 235 15 0 chr9 1577395 1577527 -116285100 + MER94 DNA DNA 1 134 0 2160 101 0 10 chr9 1577572 1577870 -116284757 + AluSg SINE Alu 6 300 -10 215 268 106 101 chr9 1577891 1578089 -116284538 - L3 LINE CR1 -100 1477 1279 434 292 5 103 chr9 1578259 1578454 -116284173 - L3 LINE CR1 -30 1547 1372 292 340 64 32 chr9 1579169 1579357 -116283270 + MIR3 SINE MIR 10 203 -5 1818 166 7 3 chr9 1580081 1580377 -116282250 - AluJb SINE Alu -15 297 1 339 308 89 0 chr9 1580881 1581027 -116281600 + Charlie8 DNA MER1_type 85 243 -2174 315 295 150 52 chr9 1582545 1582738 -116279889 + MIR SINE MIR 46 257 -5 205 325 163 12 chr9 1583200 1583360 -116279267 + L2 LINE L2 2157 2340 -974 2478 174 8 32 chr9 1583414 1583886 -116278741 - MER70B LTR ERVL -117 461 1 395 366 31 26 chr9 1584232 1584599 -116278028 + L2 LINE L2 2693 3053 -219 228 241 48 24 chr9 1584643 1584726 -116277901 + MLT1I LTR MaLR 130 214 -195 268 385 117 6 chr9 1584903 1585082 -116277545 + L2 LINE L2 3070 3268 -4 629 302 155 22 chr9 1585289 1585690 -116276937 - LTR33 LTR ERVL -2 519 66 408 261 137 70 chr9 1585832 1586073 -116276554 + L2 LINE L2 2980 3236 -36 199 283 0 0 chr9 1586561 1586614 -116276013 + MIR SINE MIR 76 128 -80 198 0 0 0 chr9 1587691 1587713 -116274914 + (CAG)n Simple_repeat Simple_repeat 1 22 0 420 284 43 7 chr9 1588229 1588370 -116274257 - L2 LINE L2 0 3313 3168 434 345 40 22 chr9 1588700 1588743 -116273884 - L2 LINE L2 -543 2771 2730 477 277 9 0 chr9 1588743 1588855 -116273772 - MER81 DNA DNA -1 113 1 434 345 40 22 chr9 1588855 1589037 -116273590 - L2 LINE L2 -584 2730 2542 1743 168 58 28 chr9 1589090 1589454 -116273173 - THE1C LTR MaLR 0 375 1 5122 132 11 19 chr9 1589454 1590302 -116272325 - THE1C-int LTR MaLR 0 1580 740 1817 116 21 0 chr9 1590306 1590591 -116272036 - THE1C-int LTR MaLR -1184 396 106 5342 108 13 12 chr9 1590591 1591411 -116271216 + HERVL-B3 LTR ERVL 4834 5654 0 1931 215 50 59 chr9 1591411 1591970 -116270657 + MLT2B3 LTR ERVL 1 554 0 807 309 139 14 chr9 1591993 1592498 -116270129 - L2 LINE L2 -826 2488 1921 452 111 0 0 chr9 1592499 1592562 -116270065 + AluJ/FRAM SINE Alu 233 295 -17 201 375 60 39 chr9 1592570 1592802 -116269825 - L2 LINE L2 -1391 1923 1687 250 276 43 43 chr9 1592978 1593094 -116269533 + L2 LINE L2 2595 2710 -604 735 224 37 8 chr9 1593100 1593345 -116269282 + L1MD2 LINE L1 2346 2597 -3943 3408 213 42 21 chr9 1593350 1593550 -116269077 + L1MD2 LINE L1 5482 5676 -1077 2068 84 7 15 chr9 1593550 1593824 -116268803 + AluY SINE Alu 22 293 -18 3408 213 42 21 chr9 1593824 1594642 -116267985 + L1MD2 LINE L1 5676 6538 -215 346 224 10 0 chr9 1594631 1594729 -116267898 + L1MC1 LINE L1 5204 5302 -844 * 271 203 0 0 chr9 1594770 1594829 -116267798 + L1MC1 LINE L1 5292 5350 -983 1019 153 20 10 chr9 1594839 1595035 -116267592 + L1MC1 LINE L1 5571 5768 -565 3065 180 38 19 chr9 1595039 1595637 -116266990 + L1MC1 LINE L1 5356 5941 -301 6220 57 1 1 chr9 1595637 1596412 -116266215 + L1PA6 LINE L1 5367 6141 -13 3065 180 38 19 chr9 1596412 1596437 -116266190 + L1MC1 LINE L1 5941 5964 -278 1671 205 19 3 chr9 1596437 1596803 -116265824 + L1MC1 LINE L1 5962 6333 0 3065 180 38 19 chr9 1596803 1597053 -116265574 + L1MC1 LINE L1 5964 6242 0 654 329 111 23 chr9 1597055 1597169 -116265458 + L2 LINE L2 2708 2811 -502 186 43 0 0 chr9 1597169 1597192 -116265435 + (TC)n Simple_repeat Simple_repeat 2 24 0 654 329 111 23 chr9 1597192 1597630 -116264997 + L2 LINE L2 2811 3312 -1 1075 149 97 154 chr9 1598339 1598722 -116263905 - MLT1A2 LTR MaLR -12 362 2 2897 6 0 0 chr9 1598967 1599281 -116263346 - AluYb8 SINE Alu -4 314 1 1635 264 128 38 chr9 1599380 1600331 -116262296 + L2 LINE L2 2032 3120 -193 2245 162 26 33 chr9 1600331 1600751 -116261876 + MER47B DNA MER2_type 1 417 -1 1635 264 128 38 chr9 1600751 1600960 -116261667 + L2 LINE L2 3120 3309 -4 197 200 25 0 chr9 1600963 1601003 -116261624 - MIR SINE MIR -63 145 105 2016 107 13 3 chr9 1601055 1601372 -116261255 - L1PA15 LINE L1 -582 5583 5264 3417 130 23 5 chr9 1601372 1601933 -116260694 + L1PA15 LINE L1 5595 6165 0 394 325 12 35 chr9 1603430 1603599 -116259028 - MER5B DNA MER1_type 0 178 14 302 274 51 45 chr9 1603766 1603923 -116258704 + MIR SINE MIR 80 237 -25 502 289 151 0 chr9 1604314 1604466 -116258161 + MER5A DNA MER1_type 9 183 -6 407 267 223 5 chr9 1606148 1606350 -116256277 - MER112 DNA MER1_type -7 253 8 1123 127 16 37 chr9 1606542 1606731 -116255896 + MER5A DNA MER1_type 5 189 0 237 248 23 39 chr9 1607591 1607720 -116254907 + (CA)n Simple_repeat Simple_repeat 1 127 0 304 118 29 0 chr9 1607753 1607821 -116254806 + (CA)n Simple_repeat Simple_repeat 1 70 0 2417 69 0 3 chr9 1607981 1608285 -116254342 + AluY SINE Alu 1 303 -8 1924 169 0 3 chr9 1608409 1608705 -116253922 + AluJb SINE Alu 3 297 -15 260 280 107 39 chr9 1608723 1609059 -116253568 + L1M4 LINE L1 3587 3945 -2201 4021 211 34 36 chr9 1609070 1610195 -116252432 - L1MB3 LINE L1 -3 6163 5036 1780 188 26 0 chr9 1610195 1610499 -116252128 - AluJb SINE Alu 0 312 1 4021 211 34 36 chr9 1610499 1611473 -116251154 - L1MB3 LINE L1 -1130 5036 4062 2795 239 71 2 chr9 1611460 1612332 -116250295 - L1MB3 LINE L1 -2319 3810 2879 * 2414 62 0 28 chr9 1612549 1612869 -116249758 - AluY SINE Alu 0 311 1 396 73 0 0 chr9 1612874 1612929 -116249698 + L1PA6 LINE L1 6094 6148 -6 1899 222 103 2 chr9 1613038 1613493 -116249134 + MLT1D LTR MaLR 1 501 -4 898 274 114 76 chr9 1613562 1614511 -116248116 - L1MB3 LINE L1 -4862 1257 335 2566 114 5 11 chr9 1614511 1614888 -116247739 - THE1C LTR MaLR 0 375 1 898 274 114 76 chr9 1614888 1615226 -116247401 - L1MB3 LINE L1 -5784 335 11 991 208 97 143 chr9 1615232 1615818 -116246809 - MLT1F1 LTR MaLR 0 567 17 1999 191 12 10 chr9 1615842 1616251 -116246376 - L1PA16 LINE L1 0 6166 5757 894 245 100 121 chr9 1616301 1617134 -116245493 + L1ME4a LINE L1 5307 6121 0 413 331 22 43 chr9 1617436 1617620 -116245007 - MIR SINE MIR -50 212 33 184 395 47 12 chr9 1617654 1617740 -116244887 - L2 LINE L2 -28 3244 3156 417 86 0 0 chr9 1618524 1618582 -116244045 + (TAA)n Simple_repeat Simple_repeat 3 60 0 200 257 57 14 chr9 1618698 1618768 -116243859 + MIR SINE MIR 58 130 -78 567 228 78 71 chr9 1618837 1619092 -116243535 - MIR SINE MIR -1 261 5 485 361 50 4 chr9 1619666 1619904 -116242723 + MIR SINE MIR 8 256 -6 239 279 15 0 chr9 1622014 1622082 -116240545 + MIR SINE MIR 178 246 -16 8312 198 31 17 chr9 1622451 1625322 -116237305 - L1PA16 LINE L1 -9 6157 3311 671 245 14 0 chr9 1626201 1626348 -116236279 - MIR SINE MIR -111 151 3 24 0 0 0 chr9 1626878 1626902 -116235725 + AT_rich Low_complexity Low_complexity 1 24 0 266 260 0 26 chr9 1627053 1627130 -116235497 + CT-rich Low_complexity Low_complexity 2 76 0 516 222 71 142 chr9 1629071 1629395 -116233232 + MLT1J2 LTR MaLR 150 450 0 27 0 0 0 chr9 1629526 1629553 -116233074 + AT_rich Low_complexity Low_complexity 1 27 0 255 300 0 0 chr9 1629624 1629694 -116232933 - L2 LINE L2 0 3313 3244 240 345 36 9 chr9 1629807 1629917 -116232710 - L2 LINE L2 -91 3222 3110 34 24 0 0 chr9 1630636 1630677 -116231950 + AT_rich Low_complexity Low_complexity 1 41 0 625 245 19 26 chr9 1631069 1631278 -116231349 - MIR SINE MIR 0 262 8 181 303 110 58 chr9 1632081 1632236 -116230391 + L3b LINE CR1 1225 1387 -196 321 260 20 82 chr9 1632329 1632475 -116230152 - MIR SINE MIR -56 206 70 279 0 0 0 chr9 1632786 1632817 -116229810 + (A)n Simple_repeat Simple_repeat 1 31 0 630 175 0 0 chr9 1632892 1633006 -116229621 - L1MB8 LINE L1 -2 6176 6063 307 331 97 36 chr9 1633381 1633795 -116228832 + L2 LINE L2 2267 2705 -609 3377 111 4 14 chr9 1633795 1634300 -116228327 + Charlie3 DNA MER1_type 1 500 -2210 404 119 0 0 chr9 1634294 1634353 -116228274 + Charlie3 DNA MER1_type 2242 2300 -410 * 3024 97 2 50 chr9 1634356 1634840 -116227787 + Charlie3 DNA MER1_type 2245 2705 -5 180 356 20 89 chr9 1634842 1635044 -116227583 + L2 LINE L2 2699 2886 -428 2505 61 0 0 chr9 1635119 1635430 -116227197 - AluY SINE Alu 0 311 1 261 290 0 0 chr9 1635658 1635727 -116226900 + L2 LINE L2 3196 3264 -8 1993 196 70 32 chr9 1635813 1636344 -116226283 + L1MB3 LINE L1 5625 6175 -8 2351 148 0 3 chr9 1636344 1636710 -116225917 + MLT1A1 LTR MaLR 1 365 0 348 359 27 29 chr9 1636720 1636889 -116225738 + MIR3 SINE MIR 20 191 -17 328 296 49 0 chr9 1637130 1637211 -116225416 - L2 LINE L2 -2 3270 3186 231 200 0 0 chr9 1638240 1638280 -116224347 - L2 LINE L2 -12 3301 3262 200 313 138 12 chr9 1638373 1638453 -116224174 - MIR SINE MIR -53 209 120 * 231 344 56 11 chr9 1638436 1638526 -116224101 + MIR SINE MIR 28 121 -87 1353 190 26 95 chr9 1638619 1639041 -116223586 - MSTD LTR MaLR 0 396 4 5602 237 84 27 chr9 1639058 1640684 -116221943 - MSTD-int LTR MaLR -15 1720 2 979 172 59 25 chr9 1640686 1640890 -116221737 - MSTD LTR MaLR 0 396 186 2298 125 0 0 chr9 1641243 1641555 -116221072 - AluSx SINE Alu 0 312 1 349 293 96 19 chr9 1642821 1642978 -116219649 - MIR3 SINE MIR 0 208 40 367 277 85 57 chr9 1643602 1643779 -116218848 + MIR SINE MIR 35 216 -46 932 303 92 10 chr9 1643781 1644193 -116218434 - LTR16A LTR ERVL -4 446 1 358 350 12 8 chr9 1644334 1644616 -116218011 - ERVL LTR ERVL -327 5327 5046 563 356 35 23 chr9 1644650 1645164 -116217463 - ERVL LTR ERVL -754 4900 4436 633 315 36 47 chr9 1645286 1645788 -116216839 - ERVL LTR ERVL -2020 3634 3137 738 317 75 13 chr9 1645824 1646130 -116216497 - ERVL LTR ERVL -1912 3084 2760 3779 290 51 11 chr9 1646131 1647437 -116215190 - HERV16 LTR ERVL -3480 1516 158 420 364 65 16 chr9 1648691 1648875 -116213752 + MIR3 SINE MIR 1 193 -15 345 345 39 97 chr9 1648895 1649309 -116213318 - L2 LINE L2 0 3272 2883 540 286 120 36 chr9 1649762 1650855 -116211772 - L1MDb LINE L1 -3660 2555 1398 315 278 7 48 chr9 1650867 1651127 -116211500 - L1MDb LINE L1 -5097 1108 857 305 339 36 9 chr9 1651785 1651897 -116210730 - L1MDb LINE L1 -5953 252 138 253 254 0 0 chr9 1653922 1653985 -116208642 + GA-rich Low_complexity Low_complexity 2 64 0 954 188 18 61 chr9 1654294 1654486 -116208141 + MER20 DNA MER1_type 1 183 -36 2067 212 125 64 chr9 1654486 1655263 -116207364 - LTR1B LTR ERV1 0 826 3 954 188 18 61 chr9 1655263 1655299 -116207328 + MER20 DNA MER1_type 183 219 0 2015 137 3 3 chr9 1655439 1655738 -116206889 - AluSx SINE Alu -11 301 3 21 36 0 0 chr9 1655870 1655898 -116206729 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr9 1655991 1656026 -116206601 + AT_rich Low_complexity Low_complexity 1 35 0 311 269 50 55 chr9 1656263 1656464 -116206163 - HAL1 LINE L1 -10 2497 2298 1266 298 109 10 chr9 1656476 1656989 -116205638 + Zaphod DNA AcHobo 44 607 -3424 2668 177 23 86 chr9 1656995 1657725 -116204902 - L1MC2 LINE L1 -2 6342 5659 642 254 83 99 chr9 1657723 1658583 -116204044 - L1ME LINE L1 -4968 1088 272 * 438 320 59 51 chr9 1658714 1659123 -116203504 - L1ME LINE L1 -5610 460 49 9598 224 46 29 chr9 1659175 1659687 -116202940 + L1MB2 LINE L1 1964 2466 -3941 12873 30 5 0 chr9 1659687 1662001 -116200626 + L1PA3 LINE L1 3833 6152 -3 9598 224 46 29 chr9 1662001 1665840 -116196787 + L1MB2 LINE L1 2466 6400 -7 1851 276 105 63 chr9 1665852 1666003 -116196624 - HAL1 LINE L1 -542 1965 1822 2512 74 3 0 chr9 1666003 1666312 -116196315 - AluSp SINE Alu -3 310 1 1851 276 105 63 chr9 1666312 1667942 -116194685 - HAL1 LINE L1 -685 1822 110 1034 184 23 122 chr9 1668551 1668894 -116193733 + MLT1A1 LTR MaLR 1 309 -56 196 29 0 57 chr9 1669851 1669886 -116192741 + (TTG)n Simple_repeat Simple_repeat 3 35 0 267 114 0 0 chr9 1670759 1670803 -116191824 + (CA)n Simple_repeat Simple_repeat 2 45 0 194 315 0 0 chr9 1671395 1671449 -116191178 - L2 LINE L2 -5 3308 3255 22 35 0 0 chr9 1671887 1671916 -116190711 + AT_rich Low_complexity Low_complexity 1 29 0 198 100 50 25 chr9 1672256 1672296 -116190331 + MIR SINE MIR 101 141 -67 2402 44 14 14 chr9 1672335 1672631 -116189996 + AluY SINE Alu 1 296 -15 777 193 0 40 chr9 1672709 1672885 -116189742 + MER3 DNA MER1_type 4 125 -84 248 148 19 56 chr9 1673590 1673644 -116188983 - MIR SINE MIR -79 183 132 242 253 53 13 chr9 1673871 1673946 -116188681 + L2 LINE L2 3194 3271 -1 5291 94 8 7 chr9 1673966 1674731 -116187896 + MER4E LTR ERV1 1 766 0 637 224 109 0 chr9 1675259 1675433 -116187194 + L1MC1 LINE L1 6141 6333 0 223 312 56 56 chr9 1675658 1675783 -116186844 + L2 LINE L2 3134 3258 -14 1240 180 25 109 chr9 1675885 1676279 -116186348 + MLT1A1 LTR MaLR 1 361 -4 669 269 55 43 chr9 1679969 1680225 -116182402 + MIR SINE MIR 4 262 0 23 54 0 0 chr9 1680574 1680611 -116182016 + AT_rich Low_complexity Low_complexity 1 37 0 243 220 0 34 chr9 1681440 1681499 -116181128 + (CATA)n Simple_repeat Simple_repeat 3 59 0 284 183 21 0 chr9 1681629 1681697 -116180930 - MER5A DNA MER1_type -116 73 4 640 196 0 0 chr9 1681721 1681828 -116180799 - AluSx SINE Alu -20 292 186 851 86 0 0 chr9 1681828 1681933 -116180694 - AluSx SINE Alu -207 105 1 657 350 60 53 chr9 1681988 1682761 -116179866 + L2 LINE L2 2481 3271 -1 1799 111 4 8 chr9 1682820 1683072 -116179555 + AluSq SINE Alu 12 262 -51 806 108 8 0 chr9 1683072 1683192 -116179435 + AluSp/q SINE Alu 190 310 -3 355 314 20 10 chr9 1683657 1683759 -116178868 + LTR67 LTR ERVL 115 217 -340 1238 251 5 64 chr9 1683790 1684180 -116178447 - L2 LINE L2 0 3313 2947 436 210 87 118 chr9 1684305 1684500 -116178127 + LTR67 LTR ERVL 361 549 -8 230 267 68 93 chr9 1684912 1684940 -116177687 + MER104 DNA Tc2 2 29 -1869 1853 145 0 30 chr9 1684940 1685260 -116177367 - AluSx SINE Alu 0 312 2 230 267 68 93 chr9 1685260 1685392 -116177235 + MER104 DNA Tc2 29 158 -22 3276 169 58 2 chr9 1685936 1686520 -116176107 - MER73 LTR ERVL 0 644 28 385 291 78 47 chr9 1687047 1687305 -116175322 - MLT1H LTR MaLR -204 345 80 207 321 43 62 chr9 1687473 1687635 -116174992 - MIR SINE MIR -6 256 98 216 0 0 0 chr9 1688467 1688491 -116174136 + (TA)n Simple_repeat Simple_repeat 2 25 0 241 224 20 0 chr9 1689157 1689206 -116173421 + GA-rich Low_complexity Low_complexity 4 53 0 838 246 212 15 chr9 1689811 1690136 -116172491 - MLT1J2 LTR MaLR -18 432 44 331 273 91 10 chr9 1690163 1690262 -116172365 - MIR SINE MIR -65 143 37 308 314 86 14 chr9 1691613 1691753 -116170874 + L2 LINE L2 3121 3270 -2 1745 226 12 0 chr9 1691846 1692183 -116170444 - MER58B DNA MER1_type 0 341 1 27 29 0 0 chr9 1692687 1692721 -116169906 + AT_rich Low_complexity Low_complexity 1 34 0 2075 113 44 10 chr9 1692812 1693105 -116169522 + AluSx SINE Alu 1 303 -9 614 328 70 29 chr9 1693291 1693532 -116169095 + MIR SINE MIR 12 262 0 259 357 134 0 chr9 1694443 1694555 -116168072 + MIR3 SINE MIR 55 181 -27 326 320 107 46 chr9 1694937 1695330 -116167297 + L2 LINE L2 2620 3034 -238 417 349 178 25 chr9 1695702 1696017 -116166610 - L2 LINE L2 -371 2943 2581 * 857 111 16 148 chr9 1696007 1696196 -116166431 - MER5A DNA MER1_type -25 164 1 238 370 0 0 chr9 1696196 1696286 -116166341 - L2 LINE L2 -724 2590 2501 2208 176 57 20 chr9 1696941 1697379 -116165248 + MLT1C LTR MaLR 11 464 -3 204 295 143 27 chr9 1697583 1697695 -116164932 + L2 LINE L2 3146 3270 -2 1573 202 76 9 chr9 1698386 1698728 -116163899 - MLT1A1 LTR MaLR 0 365 1 278 282 68 10 chr9 1698728 1698831 -116163796 + MER94 DNA DNA 26 134 0 2376 65 0 10 chr9 1699046 1699340 -116163287 - AluY SINE Alu -20 291 1 491 318 77 14 chr9 1699562 1699782 -116162845 + MIR SINE MIR 29 262 0 2169 106 0 0 chr9 1700901 1701184 -116161443 + AluSg SINE Alu 6 288 -22 595 281 54 0 chr9 1702204 1702389 -116160238 - LTR16A LTR ERVL -235 215 21 397 257 67 0 chr9 1702388 1702493 -116160134 + MER94 DNA DNA 22 133 -1 * 232 312 52 0 chr9 1703228 1703305 -116159322 + L2 LINE L2 3231 3311 -2 1600 328 17 17 chr9 1704466 1705048 -116157579 - HERV16 LTR ERVL -2764 2232 1651 1051 235 101 35 chr9 1705083 1705449 -116157178 - LTR16A LTR ERVL -1 449 60 388 257 67 0 chr9 1705480 1705585 -116157042 + MER94 DNA DNA 22 133 -1 2001 139 3 19 chr9 1706379 1706695 -116155932 + AluJb SINE Alu 1 311 -1 281 191 96 53 chr9 1707265 1707359 -116155268 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1707865 1708000 -116154627 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1708247 1708281 -116154346 + AT_rich Low_complexity Low_complexity 1 34 0 315 277 62 45 chr9 1708473 1708569 -116154058 + L1ME3 LINE L1 5747 5849 -313 2274 119 0 0 chr9 1708569 1708881 -116153746 - AluSx SINE Alu 0 312 1 315 277 62 45 chr9 1708881 1708961 -116153666 + L1ME3 LINE L1 5849 5926 -236 646 247 88 36 chr9 1709156 1709350 -116153277 - MLT1H LTR MaLR 0 549 364 646 233 124 71 chr9 1709371 1709637 -116152990 - MLT1H LTR MaLR -258 291 12 25 51 0 0 chr9 1709756 1709795 -116152832 + AT_rich Low_complexity Low_complexity 1 39 0 393 346 92 19 chr9 1713299 1713362 -116149265 - L3 LINE CR1 -31 1546 1489 2192 138 39 30 chr9 1713362 1713723 -116148904 + THE1B LTR MaLR 1 364 0 393 346 92 19 chr9 1713723 1713919 -116148708 - L3 LINE CR1 -88 1489 1268 354 228 184 56 chr9 1713946 1714266 -116148361 - L1ME4a LINE L1 -31 6090 5730 219 306 40 65 chr9 1714287 1714411 -116148216 - L2 LINE L2 0 3313 3193 279 278 38 45 chr9 1714569 1714702 -116147925 - L1ME4a LINE L1 -590 5531 5400 811 241 82 5 chr9 1715660 1715880 -116146747 - MIR SINE MIR 0 262 26 325 300 100 9 chr9 1715948 1716058 -116146569 - MIR3 SINE MIR -54 154 35 29 28 0 0 chr9 1716210 1716246 -116146381 + AT_rich Low_complexity Low_complexity 1 36 0 44120 44 6 3 chr9 1716983 1723112 -116139515 + L1PA3 LINE L1 8 6153 -2 222 118 0 0 chr9 1723205 1723239 -116139388 + (TC)n Simple_repeat Simple_repeat 2 35 0 902 358 47 12 chr9 1723580 1724152 -116138475 - L2 LINE L2 -1102 2212 1621 684 24 0 0 chr9 1724191 1724273 -116138354 + (TC)n Simple_repeat Simple_repeat 1 82 0 7738 52 9 6 chr9 1724739 1730250 -116132377 + L1PA4 LINE L1 628 6155 0 2786 16 0 0 chr9 1730253 1730558 -116132069 + AluYa5 SINE Alu 1 305 -6 29 0 0 0 chr9 1730728 1730757 -116131870 + AT_rich Low_complexity Low_complexity 1 29 0 3105 303 66 47 chr9 1731221 1732873 -116129754 + ERVL LTR ERVL 1012 2695 -3069 453 258 0 0 chr9 1732897 1732990 -116129637 + MER5A DNA MER1_type 9 101 -88 892 290 128 28 chr9 1733021 1733423 -116129204 + ERVL LTR ERVL 2675 3104 -2381 1253 127 0 0 chr9 1733540 1733713 -116128914 + AluJb SINE Alu 140 312 0 281 191 96 53 chr9 1734283 1734377 -116128250 + L2 LINE L2 3211 3308 -5 470 252 22 0 chr9 1734883 1735018 -116127609 - L1M4 LINE L1 -1127 5019 4882 34 0 0 0 chr9 1735265 1735299 -116127328 + AT_rich Low_complexity Low_complexity 1 34 0 294 212 63 0 chr9 1735491 1735562 -116127065 + L1ME LINE L1 5747 5813 -349 2818 19 0 0 chr9 1735587 1735898 -116126729 - AluYa5 SINE Alu 0 311 1 35584 41 3 2 chr9 1735901 1740971 -116121656 - L1PA4 LINE L1 0 6155 1081 622 178 0 0 chr9 1740939 1741040 -116121587 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1741186 1741272 -116121355 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1742022 1742043 -116120584 + AT_rich Low_complexity Low_complexity 1 21 0 2642 287 119 14 chr9 1742298 1743543 -116119084 + L2 LINE L2 1378 2752 -562 232 273 130 63 chr9 1743543 1743781 -116118846 - LTR16A1 LTR ERVL -12 445 192 701 261 187 28 chr9 1743806 1744170 -116118457 + L2 LINE L2 2892 3313 0 1510 184 46 158 chr9 1745407 1745933 -116116694 - MLT1C LTR MaLR 0 467 1 512 321 29 24 chr9 1746650 1746896 -116115731 + MIR SINE MIR 2 248 -14 261 216 0 0 chr9 1747955 1748006 -116114621 - MADE1 DNA Mariner 0 80 30 2575 146 56 15 chr9 1748087 1748498 -116114129 + MSTA LTR MaLR 1 428 0 300 241 128 73 chr9 1748945 1749218 -116113409 + LTR16C LTR ERVL 163 483 -8 223 283 64 121 chr9 1749334 1749754 -116112873 + L2 LINE L2 2869 3264 -8 2089 110 40 3 chr9 1751067 1751366 -116111261 - AluSx SINE Alu -2 310 1 2459 161 32 19 chr9 1751382 1751853 -116110774 - L1MB7 LINE L1 -9 6175 5699 266 254 0 0 chr9 1754632 1754691 -116107936 + MIR SINE MIR 93 151 -111 313 282 10 58 chr9 1755616 1755719 -116106908 + MIR3 SINE MIR 90 187 -21 322 253 69 11 chr9 1756464 1756551 -116106076 - MIR SINE MIR -142 120 29 1139 226 11 90 chr9 1757621 1757998 -116104629 + MLT2B1 LTR ERVL 1 347 -173 1973 209 45 5 chr9 1758007 1758533 -116104094 + LTR69 LTR ERVL 1 588 0 659 176 0 135 chr9 1758533 1758726 -116103901 + MLT2B1 LTR ERVL 352 518 -2 579 245 108 44 chr9 1758863 1759067 -116103560 - MLT1C LTR MaLR 0 467 251 3700 198 32 26 chr9 1759072 1759874 -116102753 + L1MC3 LINE L1 5863 6669 -1116 743 198 32 0 chr9 1760031 1760157 -116102470 + FLAM_A SINE Alu 1 130 -3 536 165 157 58 chr9 1760582 1760703 -116101924 + FLAM_C SINE Alu 1 133 0 517 186 230 0 chr9 1761146 1761259 -116101368 - FLAM_C SINE Alu -2 141 3 24 53 0 0 chr9 1761904 1761942 -116100685 + AT_rich Low_complexity Low_complexity 1 38 0 851 192 47 5 chr9 1762248 1762441 -116100186 - L1MC4 LINE L1 -680 7362 7162 5365 133 23 52 chr9 1762562 1762713 -116099914 + L1MA9 LINE L1 5327 5481 -831 2169 115 7 0 chr9 1762713 1763018 -116099609 + AluSx SINE Alu 1 307 -5 5365 133 23 52 chr9 1763018 1763882 -116098745 + L1MA9 LINE L1 5481 6312 0 258 32 0 0 chr9 1764869 1764900 -116097727 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 611 219 15 7 chr9 1765651 1765788 -116096839 - MSTD LTR MaLR -258 138 1 397 332 57 17 chr9 1766397 1766698 -116095929 + HAL1 LINE L1 110 422 -2085 403 302 132 16 chr9 1767335 1767524 -116095103 - MIR SINE MIR -39 223 13 243 0 0 0 chr9 1767608 1767635 -116094992 + (TAA)n Simple_repeat Simple_repeat 2 28 0 2076 112 0 10 chr9 1768922 1769236 -116093391 + AluY SINE Alu 1 311 0 7722 41 7 1 chr9 1770360 1771462 -116091165 + L1PA4 LINE L1 5037 6144 -11 222 118 0 0 chr9 1771566 1771600 -116091027 + (TC)n Simple_repeat Simple_repeat 2 35 0 871 356 47 14 chr9 1771942 1772515 -116090112 - L2 LINE L2 -1102 2212 1621 399 21 0 0 chr9 1772554 1772602 -116090025 + (TC)n Simple_repeat Simple_repeat 1 48 0 2007 206 104 50 chr9 1772890 1773464 -116089163 - MLT1E3 LTR MaLR 0 624 20 201 94 0 0 chr9 1773579 1773611 -116089016 + (TTGG)n Simple_repeat Simple_repeat 4 35 0 2317 98 0 0 chr9 1773615 1773911 -116088716 - AluY SINE Alu -15 296 1 854 78 0 0 chr9 1774150 1774252 -116088375 + L1PA8 LINE L1 6057 6158 -14 916 266 72 26 chr9 1774293 1774598 -116088029 + L1M4b LINE L1 1062 1380 -5479 502 264 119 6 chr9 1774896 1775249 -116087378 + MLT1H LTR MaLR 138 549 0 302 291 30 79 chr9 1776049 1776214 -116086413 + MIR SINE MIR 12 168 -94 417 259 118 30 chr9 1776313 1776448 -116086179 + MIR SINE MIR 14 160 -102 2090 56 0 0 chr9 1776457 1776708 -116085919 - L1PA2 LINE L1 -403 5752 5502 3836 21 0 0 chr9 1776708 1777126 -116085501 + L1PA2 LINE L1 5737 6155 0 2174 186 74 9 chr9 1777494 1777929 -116084698 - L1MB2 LINE L1 -23 6148 5686 359 292 62 9 chr9 1778566 1778679 -116083948 + L2 LINE L2 3179 3297 -16 1583 176 61 3 chr9 1779426 1779721 -116082906 + AluJb SINE Alu 1 312 0 3483 70 2 0 chr9 1779871 1780326 -116082301 - L1PA7 LINE L1 -785 5361 4903 6171 62 6 0 chr9 1780326 1781112 -116081515 + L1PA7 LINE L1 5363 6154 0 229 282 14 84 chr9 1781122 1781193 -116081434 - MIR SINE MIR -109 99 34 184 0 97 0 chr9 1783066 1783097 -116079530 + (TAAA)n Simple_repeat Simple_repeat 1 34 0 2154 221 46 15 chr9 1783448 1783974 -116078653 - MLT1F LTR MaLR 0 542 1 202 234 9 140 chr9 1784850 1784957 -116077670 - MER5B DNA MER1_type 0 178 86 265 275 63 21 chr9 1786023 1786165 -116076462 - ERVL LTR ERVL -8 5756 5609 27 49 0 0 chr9 1786323 1786364 -116076263 + AT_rich Low_complexity Low_complexity 1 41 0 1642 209 8 48 chr9 1786499 1786877 -116075750 - MLT1A1 LTR MaLR 0 365 3 7132 205 23 64 chr9 1786890 1788236 -116074391 - MLT1A1-int LTR MaLR -6 1729 425 356 43 0 0 chr9 1788236 1788283 -116074344 + MADE1 DNA Mariner 30 76 -4 7132 205 23 64 chr9 1788283 1788692 -116073935 - MLT1A1-int LTR MaLR -1310 425 1 1475 248 19 14 chr9 1788692 1789055 -116073572 - MLT1A1 LTR MaLR 0 365 1 4864 306 71 69 chr9 1789071 1791504 -116071123 - ERVL LTR ERVL -546 5218 2677 457 258 0 0 chr9 1791504 1791597 -116071030 - MER5A DNA MER1_type -88 101 9 4864 306 71 69 chr9 1791597 1793466 -116069161 - ERVL LTR ERVL -3087 2677 814 29 0 0 0 chr9 1793737 1793766 -116068861 + AT_rich Low_complexity Low_complexity 1 29 0 2749 16 0 0 chr9 1793936 1794241 -116068386 - AluYa5 SINE Alu -6 305 1 33215 41 3 2 chr9 1794244 1799314 -116063313 - L1PA4 LINE L1 0 6155 1081 578 178 0 0 chr9 1799282 1799383 -116063244 - L1P3 LINE L1 -6351 110 10 * 44 70 0 0 chr9 1799529 1799615 -116063012 + AT_rich Low_complexity Low_complexity 1 86 0 21 0 0 0 chr9 1800365 1800386 -116062241 + AT_rich Low_complexity Low_complexity 1 21 0 2661 286 120 15 chr9 1800641 1801886 -116060741 + L2 LINE L2 1378 2752 -562 698 270 177 32 chr9 1802106 1802513 -116060114 + L2 LINE L2 2848 3313 0 1307 184 46 158 chr9 1803750 1804276 -116058351 - MLT1C LTR MaLR 0 467 1 518 321 29 24 chr9 1804993 1805239 -116057388 + MIR SINE MIR 2 248 -14 236 178 0 0 chr9 1806304 1806349 -116056278 - MADE1 DNA Mariner -6 74 30 2385 146 56 15 chr9 1806430 1806841 -116055786 + MSTA LTR MaLR 1 428 0 231 236 131 75 chr9 1807288 1807554 -116055073 + LTR16C LTR ERVL 163 476 -15 230 309 52 109 chr9 1807677 1808097 -116054530 + L2 LINE L2 2869 3264 -8 2086 110 40 3 chr9 1809410 1809709 -116052918 - AluSx SINE Alu -2 310 1 2235 161 32 19 chr9 1809725 1810196 -116052431 - L1MB7 LINE L1 -9 6175 5699 270 254 0 0 chr9 1812975 1813034 -116049593 + MIR SINE MIR 93 151 -111 309 282 10 58 chr9 1813959 1814062 -116048565 + MIR3 SINE MIR 90 187 -21 321 253 69 11 chr9 1814807 1814894 -116047733 - MIR SINE MIR -142 120 29 1009 225 11 91 chr9 1815964 1816338 -116046289 + MLT2B1 LTR ERVL 1 344 -176 1811 209 45 5 chr9 1816350 1816876 -116045751 + LTR69 LTR ERVL 1 588 0 584 176 0 135 chr9 1816876 1817069 -116045558 + MLT2B1 LTR ERVL 352 518 -2 500 250 108 44 chr9 1817206 1817410 -116045217 - MLT1C LTR MaLR 0 467 251 5996 176 94 75 chr9 1817415 1818639 -116043988 + L1MC3 LINE L1 5863 7219 -566 230 264 33 33 chr9 1818639 1818730 -116043897 + MLT1F1 LTR MaLR 35 125 -442 5996 176 94 75 chr9 1818730 1819111 -116043516 + L1MC3 LINE L1 7219 7591 -194 862 174 60 0 chr9 1819114 1819298 -116043329 + L1MC2 LINE L1 6137 6331 -13 604 248 8 0 chr9 1820092 1820217 -116042410 + FLAM_A SINE Alu 1 126 -16 24 0 0 0 chr9 1820235 1820259 -116042368 + AT_rich Low_complexity Low_complexity 1 24 0 321 169 17 0 chr9 1820506 1820565 -116042062 - L1MB7 LINE L1 -445 5721 5662 669 70 85 4 chr9 1820565 1820837 -116041790 + (TA)n Simple_repeat Simple_repeat 1 293 0 206 108 92 15 chr9 1820838 1820903 -116041724 + (TTATA)n Simple_repeat Simple_repeat 2 71 0 627 96 39 34 chr9 1820907 1821085 -116041542 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 188 35 35 0 chr9 1821105 1821134 -116041493 + (TTATA)n Simple_repeat Simple_repeat 5 34 0 186 98 59 0 chr9 1821243 1821294 -116041333 + (TA)n Simple_repeat Simple_repeat 1 54 0 63 14 0 0 chr9 1821294 1821364 -116041263 + AT_rich Low_complexity Low_complexity 1 70 0 538 96 45 39 chr9 1821364 1821542 -116041085 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 352 184 42 24 chr9 1821542 1821710 -116040917 + (TTATA)n Simple_repeat Simple_repeat 2 172 0 5599 244 51 20 chr9 1821710 1821758 -116040869 - L1P3 LINE L1 -470 5702 5657 7290 36 0 0 chr9 1821758 1822719 -116039908 - L1PA5 LINE L1 -15 6139 5172 5599 244 51 20 chr9 1822719 1825017 -116037610 - L1P3 LINE L1 -515 5657 3269 2041 146 0 0 chr9 1825217 1825504 -116037123 + AluSx SINE Alu 1 287 -25 494 154 22 7 chr9 1825504 1825640 -116036987 + (TA)n Simple_repeat Simple_repeat 1 138 0 2739 3 0 3 chr9 1825696 1825998 -116036629 + AluYa5 SINE Alu 1 301 -10 2229 246 14 26 chr9 1826474 1827043 -116035584 - MLT1F1 LTR MaLR -2 565 4 1327 176 12 8 chr9 1827120 1827376 -116035251 - L1 LINE L1 -2316 3830 3574 1818 143 0 3 chr9 1827376 1827663 -116034964 + L1PA15 LINE L1 5876 6161 -4 647 317 45 8 chr9 1828223 1828466 -116034161 + MIR SINE MIR 8 259 -3 35 16 0 49 chr9 1829065 1829126 -116033501 + AT_rich Low_complexity Low_complexity 1 58 0 199 430 52 10 chr9 1829301 1829494 -116033133 - L2 LINE L2 -215 3057 2857 312 343 60 69 chr9 1830624 1830974 -116031653 + HAL1 LINE L1 1 347 -2160 703 267 133 39 chr9 1831260 1831747 -116030880 + HAL1 LINE L1 812 1344 -1163 2335 88 0 35 chr9 1833476 1833795 -116028832 - AluSg SINE Alu -2 308 1 216 298 0 0 chr9 1834602 1834659 -116027968 + GA-rich Low_complexity Low_complexity 1 57 0 2123 157 15 3 chr9 1835142 1835480 -116027147 - MER2 DNA MER2_type 0 344 3 313 268 0 57 chr9 1835626 1835749 -116026878 - L3 LINE CR1 -300 1277 1162 492 246 56 56 chr9 1835766 1835908 -116026719 - MER5A DNA MER1_type -21 168 27 485 285 163 36 chr9 1836083 1836444 -116026183 - L3 LINE CR1 -576 1001 595 385 95 0 119 chr9 1836463 1836547 -116026080 - MLT1D LTR MaLR -2 503 430 8551 97 7 8 chr9 1836553 1838502 -116024125 - L1PA7 LINE L1 0 6154 4188 7640 92 12 4 chr9 1838502 1839585 -116023042 - L1PA7 LINE L1 -3413 2733 1642 1424 207 153 26 chr9 1839589 1839976 -116022651 - MLT1D LTR MaLR -69 436 1 302 343 50 34 chr9 1840026 1840217 -116022410 - MIR SINE MIR -50 212 20 486 315 144 5 chr9 1840217 1840439 -116022188 - L3 LINE CR1 -1029 548 296 266 294 102 37 chr9 1841144 1841331 -116021296 + L2 LINE L2 2069 2267 -1047 982 174 35 6 chr9 1841643 1841815 -116020812 - MER5B DNA MER1_type 0 178 2 565 317 66 21 chr9 1842226 1842469 -116020158 + MIR SINE MIR 6 259 -3 184 294 29 29 chr9 1842563 1842631 -116019996 + L2 LINE L2 3244 3311 -2 219 139 0 0 chr9 1843376 1843402 -116019225 + (CA)n Simple_repeat Simple_repeat 2 30 -14 1514 180 115 49 chr9 1843402 1843768 -116018859 + MLT1B LTR MaLR 1 390 0 219 139 0 0 chr9 1843768 1843784 -116018843 + (CA)n Simple_repeat Simple_repeat 29 44 0 2164 111 7 0 chr9 1844001 1844289 -116018338 + AluSx SINE Alu 1 290 -22 28 29 0 0 chr9 1844289 1844324 -116018303 + AT_rich Low_complexity Low_complexity 1 35 0 480 302 135 14 chr9 1844607 1844829 -116017798 - MIR SINE MIR -3 259 11 5011 158 66 33 chr9 1845224 1845379 -116017248 + L1MC3 LINE L1 6709 6857 -928 225 0 0 0 chr9 1845379 1845404 -116017223 + (CA)n Simple_repeat Simple_repeat 2 26 0 5011 158 66 33 chr9 1845404 1846290 -116016337 + L1MC3 LINE L1 6857 7785 0 872 296 51 12 chr9 1846795 1847219 -116015408 - LTR16B LTR ERVL 0 464 1 293 109 0 0 chr9 1847887 1847933 -116014694 + MADE1 DNA Mariner 1 46 -34 268 179 0 71 chr9 1850326 1850382 -116012245 + L3 LINE CR1 1524 1575 -2 2156 117 0 0 chr9 1850591 1850874 -116011753 + AluSx SINE Alu 1 283 -29 1031 294 40 62 chr9 1851013 1851435 -116011192 - MER115 DNA AcHobo -271 422 10 268 380 23 8 chr9 1852012 1852141 -116010486 - MIR SINE MIR -62 146 16 253 253 11 46 chr9 1852218 1852305 -116010322 + L2 LINE L2 3229 3312 -1 256 247 101 0 chr9 1852993 1853082 -116009545 - MER113 DNA MER1_type? -420 101 4 395 277 107 0 chr9 1853086 1853198 -116009429 - MIR3 SINE MIR -49 159 36 267 306 0 0 chr9 1853463 1853555 -116009072 - MIR SINE MIR -62 146 66 321 251 156 52 chr9 1854299 1854354 -116008273 - MIR SINE MIR -18 244 196 1774 171 72 93 chr9 1854354 1854829 -116007798 - MLT1C LTR MaLR 0 467 3 321 251 156 52 chr9 1854829 1854984 -116007643 - MIR SINE MIR -66 196 12 798 253 30 47 chr9 1855110 1855205 -116007422 - MIR SINE MIR -8 254 159 1929 113 49 7 chr9 1855205 1855489 -116007138 - AluSx SINE Alu -16 296 1 798 253 30 47 chr9 1855489 1855626 -116007001 - MIR SINE MIR -103 159 26 576 232 99 72 chr9 1856921 1857130 -116005497 - MER102b DNA MER1_type -1093 335 116 468 0 0 0 chr9 1857130 1857182 -116005445 + (TG)n Simple_repeat Simple_repeat 2 53 0 576 232 99 72 chr9 1857182 1857235 -116005392 - MER102b DNA MER1_type -1312 116 66 356 198 214 57 chr9 1857249 1857441 -116005186 - MLT1H LTR MaLR -7 548 327 427 164 0 0 chr9 1857815 1857888 -116004739 + AluS SINE Alu 2 74 -238 550 275 38 30 chr9 1857906 1858182 -116004445 - MLT1H LTR MaLR -292 257 10 794 269 34 8 chr9 1858251 1858485 -116004142 + MIR SINE MIR 7 246 -16 1834 151 12 107 chr9 1858497 1858928 -116003699 - MLT1B LTR MaLR 0 390 1 315 280 27 13 chr9 1859014 1859164 -116003463 + (TA)n Simple_repeat Simple_repeat 2 153 0 1811 203 29 29 chr9 1859985 1860359 -116002268 + MLT1A2 LTR MaLR 1 374 0 668 280 114 4 chr9 1860684 1860920 -116001707 + MIR SINE MIR 1 262 0 353 316 186 0 chr9 1862659 1862874 -115999753 + MLT1L LTR MaLR 90 344 -271 2260 122 21 24 chr9 1863232 1863568 -115999059 - MER1B DNA MER1_type 0 337 3 4186 69 19 4 chr9 1863856 1864379 -115998248 + L1PA7 LINE L1 5624 6154 0 507 191 9 45 chr9 1864662 1864772 -115997855 + MER97b DNA MER1_type? 74 179 -874 2245 110 0 7 chr9 1865201 1865502 -115997125 + AluSx SINE Alu 1 299 -13 643 286 44 15 chr9 1865504 1865707 -115996920 + MLT1L LTR MaLR 394 602 -13 202 235 12 141 chr9 1866152 1866237 -115996390 - L2 LINE L2 -3 3269 3196 23 0 0 0 chr9 1867017 1867040 -115995587 + AT_rich Low_complexity Low_complexity 1 23 0 614 147 7 73 chr9 1867109 1867245 -115995382 - L1MB1 LINE L1 -26 6163 6037 276 289 133 16 chr9 1867522 1867650 -115994977 - L3 LINE CR1 -1 1576 1434 2535 175 17 7 chr9 1867739 1868161 -115994466 + MSTB LTR MaLR 1 426 0 2306 83 0 51 chr9 1868176 1868488 -115994139 + AluSc SINE Alu 1 296 -13 8357 189 41 22 chr9 1868489 1870105 -115992522 + MSTB-int LTR MaLR 6 1651 0 2228 188 57 5 chr9 1870105 1870510 -115992117 + MSTB LTR MaLR 1 426 0 798 69 0 0 chr9 1870545 1870647 -115991980 - L1PB1 LINE L1 0 6151 6050 257 274 0 14 chr9 1870653 1870726 -115991901 - L3 LINE CR1 -292 1285 1214 293 269 146 23 chr9 1871343 1871473 -115991154 - L3 LINE CR1 -426 1151 1006 900 316 39 31 chr9 1872255 1872670 -115989957 - LTR16C LTR ERVL -1 490 73 724 284 91 12 chr9 1873158 1873401 -115989226 + MIR SINE MIR 1 262 0 6351 216 52 28 chr9 1873851 1875091 -115987536 + L1MA5 LINE L1 13 1222 -5986 2091 58 0 0 chr9 1875091 1875334 -115987293 - L1PA5 LINE L1 0 6154 5912 6351 216 52 28 chr9 1875334 1875479 -115987148 + L1MA5 LINE L1 1222 1362 -5846 276 30 0 0 chr9 1875479 1875512 -115987115 + (CA)n Simple_repeat Simple_repeat 2 34 0 6351 216 52 28 chr9 1875512 1875879 -115986748 + L1MA5 LINE L1 1362 1719 -5489 2240 120 0 3 chr9 1875879 1876188 -115986439 + AluSx SINE Alu 1 308 -4 6351 216 52 28 chr9 1876188 1877319 -115985308 + L1MA5 LINE L1 1719 3845 -3363 * 25807 74 12 2 chr9 1877311 1881552 -115981075 + L1PA6 LINE L1 1872 6154 0 338 308 77 19 chr9 1881580 1881736 -115980891 + L1ME4a LINE L1 5956 6120 -1 2418 190 57 17 chr9 1881801 1882275 -115980352 + MER68 LTR ERV1 1 493 -69 6320 179 50 24 chr9 1882275 1885637 -115976990 + L1MA5 LINE L1 3822 7345 -17 1973 143 0 22 chr9 1885676 1885990 -115976637 + AluSx SINE Alu 1 307 -5 215 289 19 39 chr9 1886965 1887069 -115975558 + MIR3 SINE MIR 99 200 -8 240 255 170 21 chr9 1887169 1887263 -115975364 - L2 LINE L2 -5 3267 3160 1105 192 151 49 chr9 1889427 1889671 -115972956 + L1ME1 LINE L1 5753 6049 -117 469 261 18 0 chr9 1889671 1889782 -115972845 - MER81 DNA DNA 0 114 2 1105 192 151 49 chr9 1889782 1889907 -115972720 + L1ME1 LINE L1 6049 6160 -6 248 280 32 21 chr9 1889938 1890031 -115972596 + L2 LINE L2 3139 3232 -40 231 268 85 78 chr9 1890231 1890384 -115972243 - MER5A DNA MER1_type 0 189 36 * 285 379 7 7 chr9 1890250 1890395 -115972232 + MER5B DNA MER1_type 21 165 -13 278 193 72 60 chr9 1890770 1890853 -115971774 + MIR3 SINE MIR 118 201 -7 2054 129 0 10 chr9 1891248 1891551 -115971076 + AluSx SINE Alu 1 300 -12 1966 149 10 72 chr9 1891734 1892150 -115970477 - MLT1B LTR MaLR 0 390 1 234 258 161 32 chr9 1893301 1893425 -115969202 + MIR SINE MIR 122 261 -1 473 279 55 22 chr9 1893861 1894044 -115968583 - MIR SINE MIR -49 213 25 2293 107 0 3 chr9 1894672 1894972 -115967655 - AluSp SINE Alu -14 299 1 566 124 0 11 chr9 1894972 1895061 -115967566 - AluSc SINE Alu -5 304 217 286 391 50 11 chr9 1896318 1896497 -115966130 + L2 LINE L2 3085 3270 -2 646 309 34 27 chr9 1896634 1896896 -115965731 - LTR16A LTR ERVL -170 280 17 2189 272 79 49 chr9 1897062 1898155 -115964472 - L2 LINE L2 -4 3309 2175 207 204 0 37 chr9 1898392 1898446 -115964181 - L2 LINE L2 -1143 2171 2120 353 258 105 37 chr9 1898686 1899010 -115963617 + MLT1I LTR MaLR 53 542 0 296 395 7 7 chr9 1899033 1899180 -115963447 + MIR SINE MIR 111 257 -5 2052 171 25 3 chr9 1901169 1901526 -115961101 + MLT1A1 LTR MaLR 1 365 0 21 57 0 0 chr9 1901955 1901990 -115960637 + AT_rich Low_complexity Low_complexity 1 35 0 228 189 57 19 chr9 1902048 1902154 -115960473 + (TA)n Simple_repeat Simple_repeat 1 110 0 203 188 0 0 chr9 1902244 1902276 -115960351 - L2 LINE L2 -71 3242 3211 237 245 167 34 chr9 1902295 1902499 -115960128 - MARNA DNA Mariner -149 437 207 312 293 40 0 chr9 1903037 1903112 -115959515 - MIR SINE MIR -61 147 70 242 160 0 40 chr9 1903564 1903614 -115959013 - L2 LINE L2 -8 3305 3258 319 325 26 0 chr9 1903621 1903735 -115958892 - L1ME4a LINE L1 -254 5867 5751 195 389 11 0 chr9 1903950 1904040 -115958587 - L2 LINE L2 -2 3270 3180 2222 192 56 29 chr9 1904211 1904733 -115957894 - MLT1F LTR MaLR 0 542 7 236 274 116 0 chr9 1905653 1905748 -115956879 + MLT1K LTR MaLR 373 478 -110 1682 156 158 24 chr9 1905957 1906367 -115956260 + MLT1C LTR MaLR 3 467 0 195 69 0 0 chr9 1906490 1906519 -115956108 + (CA)n Simple_repeat Simple_repeat 2 30 0 274 245 39 0 chr9 1906589 1906691 -115955936 - L1ME3A LINE L1 -271 5899 5794 442 276 133 56 chr9 1907395 1907786 -115954841 + MLT1L LTR MaLR 195 615 0 194 304 0 0 chr9 1907916 1907962 -115954665 - MIR SINE MIR -69 139 94 180 111 0 0 chr9 1908354 1908381 -115954246 + (T)n Simple_repeat Simple_repeat 1 27 0 2144 128 0 19 chr9 1911448 1911761 -115950866 - AluSg SINE Alu -3 307 1 242 257 86 0 chr9 1912812 1912882 -115949745 - MIR3 SINE MIR -15 193 118 269 286 22 22 chr9 1913072 1913163 -115949464 - HAL1 LINE L1 -172 2335 2245 21 57 0 0 chr9 1913396 1913431 -115949196 + AT_rich Low_complexity Low_complexity 1 35 0 387 269 42 12 chr9 1913914 1914081 -115948546 - LTR33A LTR ERVL -2 521 350 474 235 55 67 chr9 1914503 1914758 -115947869 - HAL1 LINE L1 -803 1704 1453 195 114 0 0 chr9 1914760 1914795 -115947832 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 527 272 38 54 chr9 1914810 1915049 -115947578 + L2 LINE L2 2521 2755 -559 310 249 18 0 chr9 1915049 1915136 -115947491 - MLT1J2 LTR MaLR 0 550 461 184 299 221 31 chr9 1915573 1915700 -115946927 - L2 LINE L2 -1 3271 3121 231 281 65 69 chr9 1915719 1915950 -115946677 + HAL1b LINE L1 219 448 -900 7657 218 20 17 chr9 1916224 1916632 -115945995 + L1 LINE L1 2633 3038 -3108 2364 86 3 0 chr9 1916632 1916934 -115945693 + AluY SINE Alu 1 303 -8 7657 218 20 17 chr9 1916934 1918579 -115944048 + L1 LINE L1 3038 4693 -1453 4847 149 50 3 chr9 1918579 1919578 -115943049 + L1PA16 LINE L1 5116 6157 -9 21 36 0 0 chr9 1919578 1919606 -115943021 + AT_rich Low_complexity Low_complexity 1 28 0 1842 173 17 11 chr9 1919755 1920107 -115942520 + THE1A LTR MaLR 2 355 0 11404 101 14 0 chr9 1920107 1921665 -115940962 + THE1A-int LTR MaLR 1 1580 0 2038 153 14 11 chr9 1921665 1922019 -115940608 + THE1A LTR MaLR 1 355 0 2079 133 0 0 chr9 1922056 1922364 -115940263 - AluSc SINE Alu 0 308 1 195 114 0 0 chr9 1922509 1922544 -115940083 + (TTCA)n Simple_repeat Simple_repeat 4 38 0 268 315 14 0 chr9 1922550 1922623 -115940004 - L2 LINE L2 -4 3309 3236 301 26 0 0 chr9 1922768 1922807 -115939820 + U5 snRNA snRNA 6 44 -72 813 261 86 34 chr9 1923106 1923489 -115939138 - MLT1J2 LTR MaLR -44 406 4 1932 143 71 13 chr9 1924632 1925011 -115937616 - L1MB3 LINE L1 -8 6175 5775 1569 56 0 0 chr9 1925097 1925292 -115937335 + L1PA11 LINE L1 5980 6174 0 533 297 78 47 chr9 1925337 1925745 -115936882 - LTR16C LTR ERVL -10 481 61 762 291 80 40 chr9 1925862 1926237 -115936390 - MLT1J2 LTR MaLR -57 393 4 410 251 64 35 chr9 1926797 1926869 -115935758 + L1ME LINE L1 5579 5647 -474 789 284 219 7 chr9 1926869 1927299 -115935328 + LTR33 LTR ERVL 1 521 0 410 251 64 35 chr9 1927299 1927397 -115935230 + L1ME LINE L1 5647 5754 -367 183 129 0 0 chr9 1927695 1927726 -115934901 + (A)n Simple_repeat Simple_repeat 1 31 0 250 281 231 0 chr9 1927869 1927990 -115934637 - MIR SINE MIR -8 254 106 678 283 197 49 chr9 1928218 1928784 -115933843 - L2 LINE L2 -4 3309 2669 189 0 0 0 chr9 1928871 1928892 -115933735 + (A)n Simple_repeat Simple_repeat 1 21 0 1202 224 131 57 chr9 1928919 1929424 -115933203 - MLT1F LTR MaLR 0 542 1 323 296 25 96 chr9 1980553 1980752 -115881875 + MIR SINE MIR 1 185 -77 523 202 9 9 chr9 1980913 1981022 -115881605 + L2 LINE L2 3205 3313 0 2431 68 0 3 chr9 1983123 1983415 -115879212 - AluY SINE Alu -20 291 1 220 158 35 35 chr9 1984238 1984295 -115878332 + A-rich Low_complexity Low_complexity 2 58 0 875 315 99 19 chr9 1985508 1985930 -115876697 - L2 LINE L2 0 3313 2858 241 338 151 0 chr9 1987385 1987524 -115875103 + MER91A DNA MER1_type 3 162 -34 701 307 48 35 chr9 1989468 1989865 -115872762 - L1MC5 LINE L1 -531 7430 7029 2258 91 35 0 chr9 1990080 1990366 -115872261 - AluSq SINE Alu -17 296 1 315 181 145 12 chr9 1990529 1990612 -115872015 - L1MC4 LINE L1 -136 7906 7813 498 327 77 4 chr9 1993309 1993551 -115869076 + MIR SINE MIR 3 261 -1 2182 128 3 3 chr9 1993686 1993992 -115868635 - AluSx SINE Alu -6 306 1 670 261 44 32 chr9 1994946 1995195 -115867432 + MIR SINE MIR 6 257 -5 204 329 92 40 chr9 1995202 1995354 -115867273 - L2 LINE L2 -8 3264 3105 2858 13 0 3 chr9 1995662 1995974 -115866653 - AluYa5 SINE Alu 0 311 1 264 281 135 52 chr9 1995986 1996237 -115866390 - L2 LINE L2 -248 3024 2753 248 137 0 20 chr9 1996753 1996804 -115865823 + LTR33A LTR ERVL 4 53 -470 22 0 0 0 chr9 1996824 1996846 -115865781 + AT_rich Low_complexity Low_complexity 1 22 0 559 301 56 10 chr9 1996847 1997043 -115865584 - MIR SINE MIR -56 206 2 270 344 11 11 chr9 1997524 1997617 -115865010 + MIR3 SINE MIR 67 159 -49 213 39 0 0 chr9 1997780 1997806 -115864821 + (TG)n Simple_repeat Simple_repeat 1 26 0 403 326 7 14 chr9 1997817 1997955 -115864672 - MIR SINE MIR -98 164 28 209 188 0 75 chr9 1998612 1998692 -115863935 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 1588 175 58 7 chr9 1998726 1999017 -115863610 - AluJo SINE Alu -1 311 6 2446 74 0 3 chr9 1999113 1999409 -115863218 - AluY SINE Alu -16 295 1 686 301 122 34 chr9 1999677 2000145 -115862482 - LTR33A LTR ERVL -9 514 6 3585 39 15 2 chr9 2000205 2000664 -115861963 + L1PA5 LINE L1 5686 6150 -4 1058 193 0 14 chr9 2004061 2004268 -115858359 - L1MB3 LINE L1 -344 5839 5636 2593 102 5 8 chr9 2005587 2005961 -115856666 - THE1C LTR MaLR 0 375 3 251 188 42 0 chr9 2007703 2007751 -115854876 + MIR SINE MIR 94 143 -119 869 237 54 0 chr9 2011365 2011551 -115851076 + Tigger7 DNA MER2_type 7 202 -503 413 267 10 0 chr9 2011998 2012099 -115850528 + MLT1E2 LTR MaLR 518 619 -7 2200 122 0 10 chr9 2012656 2012960 -115849667 + AluSx SINE Alu 2 302 -10 2335 103 3 3 chr9 2014780 2015091 -115847536 - AluY SINE Alu 0 311 1 2246 128 0 3 chr9 2015258 2015564 -115847063 - AluSx SINE Alu -7 305 1 387 312 46 34 chr9 2016224 2016432 -115846195 - MIR SINE MIR -19 243 37 197 160 0 40 chr9 2017186 2017236 -115845391 + GA-rich Low_complexity Low_complexity 3 50 0 1430 216 96 35 chr9 2019260 2019750 -115842877 - MLT2B1 LTR ERVL 0 520 1 261 338 42 0 chr9 2020228 2020370 -115842257 + MER5A DNA MER1_type 40 187 -2 306 73 0 0 chr9 2020384 2020425 -115842202 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 340 327 7 4 chr9 2021196 2021485 -115841142 + (CA)n Simple_repeat Simple_repeat 1 290 0 238 216 98 49 chr9 2022269 2022371 -115840256 + LTR16C LTR ERVL 385 491 0 247 286 36 0 chr9 2022957 2023041 -115839586 - MIR SINE MIR -70 138 52 376 321 47 21 chr9 2024527 2024720 -115837907 - L1MEd LINE L1 -5920 199 2 239 312 128 0 chr9 2024838 2024963 -115837664 - L1M4 LINE L1 -1988 4158 4018 7596 17 0 0 chr9 2024969 2026304 -115836323 - L1PA3 LINE L1 0 6155 4821 6117 38 3 0 chr9 2026304 2027078 -115835549 + L1P LINE L1 3790 4565 -1581 220 320 70 55 chr9 2028460 2028588 -115834039 - L2 LINE L2 -1 3271 3142 1184 282 73 18 chr9 2029554 2030047 -115832580 - LTR33 LTR ERVL 0 521 2 391 252 137 33 chr9 2031120 2031349 -115831278 - MLT1G3 LTR MaLR -171 371 135 276 313 172 0 chr9 2032011 2032139 -115830488 + MIR SINE MIR 57 206 -56 583 203 0 34 chr9 2032201 2032319 -115830308 - MER58B DNA MER1_type -1 340 227 249 366 16 52 chr9 2033647 2033841 -115828786 + MIR SINE MIR 6 192 -70 930 247 113 53 chr9 2034120 2034342 -115828285 + MLT1L LTR MaLR 1 208 -303 850 252 61 0 chr9 2034342 2034588 -115828039 - MIR SINE MIR 0 262 2 930 247 113 53 chr9 2034588 2034921 -115827706 + MLT1L LTR MaLR 208 507 -4 204 313 38 12 chr9 2035014 2035094 -115827533 + L3 LINE CR1 1480 1561 -16 961 135 7 0 chr9 2035436 2035584 -115827043 + THE1B LTR MaLR 216 364 0 10081 98 37 40 chr9 2035584 2037169 -115825458 + THE1B-int LTR MaLR 1 1580 0 2616 110 0 0 chr9 2037169 2037533 -115825094 + THE1B LTR MaLR 1 364 0 303 378 58 29 chr9 2037543 2037784 -115824843 + L1 LINE L1 4531 4778 -1368 2550 66 0 3 chr9 2037971 2038272 -115824355 + AluY SINE Alu 2 301 -10 431 241 186 0 chr9 2038433 2038578 -115824049 + MER5A DNA MER1_type 10 181 -8 2316 235 51 46 chr9 2038815 2039569 -115823058 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 2039569 2039844 -115822783 - AluJb SINE Alu -18 294 1 2316 235 51 46 chr9 2039844 2039855 -115822772 - L1M4 LINE L1 -2538 3608 3599 673 249 80 20 chr9 2039850 2040051 -115822576 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 2040293 2040369 -115822258 - L1MD2 LINE L1 -543 5699 5606 * 478 242 113 36 chr9 2040368 2040562 -115822065 - L1M4 LINE L1 -2523 3623 3415 504 336 195 23 chr9 2041180 2042014 -115820613 + L2 LINE L2 1167 2144 -1170 5256 88 11 49 chr9 2042071 2043103 -115819524 + L1MA3 LINE L1 4182 6287 -18 5256 102 13 45 chr9 2043103 2043832 -115818795 + L1MA3 LINE L1 5423 6119 -186 2618 64 0 10 chr9 2043832 2044146 -115818481 + AluY SINE Alu 1 311 0 5256 102 13 45 chr9 2044146 2044327 -115818300 + L1MA3 LINE L1 6119 6304 -1 5256 88 11 49 chr9 2044327 2044345 -115818282 + L1MA3 LINE L1 6287 6304 -1 25 0 0 0 chr9 2044367 2044392 -115818235 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr9 2044558 2044583 -115818044 + AT_rich Low_complexity Low_complexity 1 25 0 1020 160 0 0 chr9 2044583 2044727 -115817900 - AluSg/x SINE Alu -23 289 146 2507 79 0 3 chr9 2047309 2047613 -115815014 + AluY SINE Alu 1 303 -8 1135 146 0 6 chr9 2047613 2047784 -115814843 + AluSp SINE Alu 134 303 -10 276 165 21 62 chr9 2048235 2048332 -115814295 + (CAGAGA)n Simple_repeat Simple_repeat 6 98 0 2545 237 43 42 chr9 2048445 2049233 -115813394 - L1ME1 LINE L1 -4 6162 5374 678 260 128 78 chr9 2050637 2051236 -115811391 + Charlie7 DNA MER1_type 48 676 -1936 472 346 15 5 chr9 2051985 2052190 -115810437 + MIR SINE MIR 53 259 -3 375 122 22 33 chr9 2052297 2052387 -115810240 + L1MA9 LINE L1 6207 6295 -17 3760 142 15 3 chr9 2059149 2059761 -115802866 + LTR31 LTR ERV1 1 619 0 2092 103 33 0 chr9 2059941 2060245 -115802382 + AluSx SINE Alu 1 313 0 38 61 0 0 chr9 2060408 2060474 -115802153 + AT_rich Low_complexity Low_complexity 1 66 0 2383 88 0 0 chr9 2063875 2064172 -115798455 + AluSg SINE Alu 1 297 -13 23 54 0 0 chr9 2064188 2064225 -115798402 + AT_rich Low_complexity Low_complexity 1 37 0 1974 141 39 33 chr9 2064249 2064611 -115798016 - THE1B LTR MaLR 0 364 1 311 0 26 0 chr9 2065582 2065621 -115797006 + (TG)n Simple_repeat Simple_repeat 2 41 0 604 292 23 88 chr9 2066173 2066604 -115796023 + L2 LINE L2 2649 3054 -218 940 215 21 0 chr9 2066613 2066799 -115795828 - MER58A DNA MER1_type 0 224 35 295 241 38 13 chr9 2066928 2067007 -115795620 + L2 LINE L2 3225 3305 -8 237 65 0 0 chr9 2067082 2067113 -115795514 + (TG)n Simple_repeat Simple_repeat 1 31 0 227 79 26 0 chr9 2067113 2067151 -115795476 + (GA)n Simple_repeat Simple_repeat 2 40 0 1869 203 29 61 chr9 2067277 2067547 -115795080 + L1MA9 LINE L1 5832 6109 -203 2632 49 0 3 chr9 2067547 2067851 -115794776 + AluY SINE Alu 1 303 -8 1869 203 29 61 chr9 2067851 2068026 -115794601 + L1MA9 LINE L1 6109 6262 -50 1854 166 0 7 chr9 2068026 2068315 -115794312 - AluJo SINE Alu -25 287 1 1869 203 29 61 chr9 2068315 2068360 -115794267 + L1MA9 LINE L1 6262 6307 -5 21 36 0 0 chr9 2068369 2068397 -115794230 + AT_rich Low_complexity Low_complexity 1 28 0 456 312 133 48 chr9 2068506 2068881 -115793746 - MLT1K LTR MaLR -33 555 149 245 279 58 0 chr9 2072080 2072184 -115790443 + MIR SINE MIR 29 138 -124 185 189 0 0 chr9 2072185 2072222 -115790405 + L2 LINE L2 3213 3249 -23 236 241 69 103 chr9 2072881 2072936 -115789691 - MLT1C LTR MaLR -15 452 397 1961 66 0 0 chr9 2072936 2073192 -115789435 + L1PA5 LINE L1 5898 6153 -1 236 241 69 103 chr9 2073192 2073310 -115789317 - MLT1C LTR MaLR -70 397 285 231 235 69 39 chr9 2073357 2073459 -115789168 - MLT1C LTR MaLR -273 194 90 1068 222 28 131 chr9 2074394 2074853 -115787774 - MLT2D LTR ERVL 0 414 3 538 26 26 93 chr9 2074975 2075168 -115787459 + (TA)n Simple_repeat Simple_repeat 1 180 0 324 252 52 102 chr9 2075172 2075545 -115787082 - L1MC5 LINE L1 -204 8037 1980 440 169 0 0 chr9 2076109 2076186 -115786441 + MLT1F1 LTR MaLR 491 567 0 2235 78 58 3 chr9 2077635 2077930 -115784697 + AluY SINE Alu 1 311 0 314 251 115 20 chr9 2078084 2078202 -115784425 - MIR SINE MIR -46 162 33 2206 246 46 26 chr9 2080154 2080286 -115782341 + MER67C LTR ERV1 1 129 -581 2179 103 13 3 chr9 2080286 2080588 -115782039 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 2080588 2081151 -115781476 + MER67C LTR ERV1 129 710 0 668 195 157 5 chr9 2082198 2082408 -115780219 + MLT1D LTR MaLR 107 348 -157 234 245 28 56 chr9 2084635 2084778 -115777849 + CT-rich Low_complexity Low_complexity 3 141 0 208 239 15 15 chr9 2086090 2086157 -115776470 + CT-rich Low_complexity Low_complexity 1 67 0 2123 101 7 3 chr9 2086531 2086828 -115775799 + AluSq SINE Alu 1 298 -15 505 149 0 28 chr9 2086839 2086946 -115775681 + (GAAA)n Simple_repeat Simple_repeat 3 106 0 1072 101 12 0 chr9 2086959 2087128 -115775499 + (GAAA)n Simple_repeat Simple_repeat 1 171 0 288 0 0 0 chr9 2087132 2087164 -115775463 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 610 315 0 28 chr9 2088254 2088432 -115774195 + MLT1G1 LTR MaLR 1 173 -422 756 269 14 5 chr9 2088577 2088789 -115773838 + MLT1G1 LTR MaLR 176 389 -206 2442 254 94 11 chr9 2092787 2093539 -115769088 - MER21B LTR ERV1 0 863 49 297 294 0 0 chr9 2093550 2093618 -115769009 - MER21B LTR ERV1 -777 86 19 321 185 48 23 chr9 2093725 2093813 -115768814 + MLT1E2 LTR MaLR 122 208 -329 265 259 0 0 chr9 2094135 2094193 -115768434 + MARNA DNA Mariner 436 493 -93 351 0 0 0 chr9 2095834 2095873 -115766754 + (TTA)n Simple_repeat Simple_repeat 2 40 0 439 234 43 0 chr9 2095998 2096092 -115766535 + MIR SINE MIR 87 184 -78 686 233 0 0 chr9 2096110 2096243 -115766384 + L1MD1 LINE L1 5599 5731 -511 1769 221 48 0 chr9 2096250 2096601 -115766026 - MER74A LTR ERVL 0 558 191 3573 137 103 46 chr9 2096601 2097403 -115765224 + MER21A LTR ERV1 1 915 -16 779 184 61 31 chr9 2097444 2097607 -115765020 - MER74A LTR ERVL -390 168 1 539 138 43 11 chr9 2097611 2097705 -115764922 + L1MD1 LINE L1 5764 5860 -499 491 233 153 25 chr9 2097716 2097879 -115764748 + L1MD1 LINE L1 5992 6175 -67 5488 166 58 28 chr9 2097984 2098436 -115764191 - L1M2 LINE L1 -819 5493 5056 1606 27 0 0 chr9 2098436 2098620 -115764007 - AluY SINE Alu -127 184 1 5488 166 58 28 chr9 2098620 2098710 -115763917 - L1M2 LINE L1 -1256 5056 4970 2384 171 17 2 chr9 2098710 2099132 -115763495 - MSTC LTR MaLR 0 428 1 5488 166 58 28 chr9 2099132 2099584 -115763043 - L1M2 LINE L1 -1342 4970 4533 2092 113 7 0 chr9 2099584 2099885 -115762742 - AluSq SINE Alu -10 303 1 5488 166 58 28 chr9 2099885 2100261 -115762366 - L1M2 LINE L1 -1779 4533 3998 316 275 50 33 chr9 2100415 2100535 -115762092 - L1MEd LINE L1 -5298 821 700 35420 52 6 3 chr9 2100711 2105114 -115757513 - L1P LINE L1 -1316 4830 414 198 24 24 49 chr9 2105188 2105229 -115757398 + (TA)n Simple_repeat Simple_repeat 1 40 0 465 302 9 0 chr9 2105362 2105468 -115757159 + MIR SINE MIR 45 151 -111 481 233 74 5 chr9 2105469 2105632 -115756995 + MER63 DNA MER1_type 1 1656 -32 401 246 18 45 chr9 2105634 2105744 -115756883 + MIR SINE MIR 156 262 0 231 190 0 0 chr9 2105900 2105958 -115756669 + T-rich Low_complexity Low_complexity 1 58 0 2942 169 5 46 chr9 2106835 2107425 -115755202 - L1MB3 LINE L1 -177 6006 5441 240 111 0 0 chr9 2111157 2111193 -115751434 + (A)n Simple_repeat Simple_repeat 1 36 0 653 270 61 22 chr9 2112193 2112423 -115750204 - MIR SINE MIR -16 246 8 22 35 0 0 chr9 2115314 2115343 -115747284 + AT_rich Low_complexity Low_complexity 1 29 0 832 273 164 49 chr9 2117141 2117629 -115744998 - LTR67 LTR ERVL -11 546 3 1809 147 7 0 chr9 2119062 2119341 -115743286 + AluJb SINE Alu 1 281 -31 1085 139 0 0 chr9 2120125 2120298 -115742329 - AluSq SINE Alu -4 309 137 208 322 34 93 chr9 2121696 2122019 -115740608 - L2 LINE L2 -7 3265 2962 522 264 31 8 chr9 2123086 2123215 -115739412 + MLT1I LTR MaLR 104 235 -174 288 0 0 0 chr9 2123592 2123624 -115739003 + (A)n Simple_repeat Simple_repeat 1 32 0 326 358 129 29 chr9 2123878 2124157 -115738470 + L2 LINE L2 2966 3272 0 23 0 0 0 chr9 2124633 2124656 -115737971 + AT_rich Low_complexity Low_complexity 1 23 0 227 296 14 0 chr9 2124660 2124731 -115737896 + L1ME LINE L1 5500 5571 -595 2282 78 0 0 chr9 2125045 2125339 -115737288 - AluSg SINE Alu -15 295 2 198 216 59 0 chr9 2125771 2125822 -115736805 - L2 LINE L2 -2 3311 3258 188 300 133 11 chr9 2126023 2126113 -115736514 - MIR SINE MIR -25 237 137 471 298 34 0 chr9 2126240 2126396 -115736231 - MER20B DNA MER1_type -23 196 30 31 0 0 0 chr9 2126513 2126544 -115736083 + AT_rich Low_complexity Low_complexity 1 31 0 280 285 53 53 chr9 2126644 2126872 -115735755 + L1MC5 LINE L1 7703 7930 -31 203 182 0 0 chr9 2127348 2127381 -115735246 + polypurine Low_complexity Low_complexity 2 34 0 329 185 0 0 chr9 2128527 2128592 -115734035 + L1MB3 LINE L1 6091 6155 -28 23 0 0 0 chr9 2128608 2128631 -115733996 + AT_rich Low_complexity Low_complexity 1 23 0 319 268 94 79 chr9 2129075 2129202 -115733425 - L2 LINE L2 -7 3265 3137 203 290 93 65 chr9 2133670 2133777 -115728850 - L2 LINE L2 -4 3309 3200 231 287 139 16 chr9 2133830 2133876 -115728751 - MER20B DNA MER1_type -604 179 140 1919 166 132 3 chr9 2133876 2134255 -115728372 + MSTA LTR MaLR 1 428 0 231 287 139 16 chr9 2134255 2134330 -115728297 - MER20B DNA MER1_type -643 140 43 252 363 98 0 chr9 2134389 2134491 -115728136 - MIR3 SINE MIR -3 205 94 553 211 11 58 chr9 2135211 2135401 -115727226 - L1MDb LINE L1 -2125 3955 3775 502 167 79 18 chr9 2135398 2135512 -115727115 - L1MB3 LINE L1 -2 6181 6061 * 1044 156 6 6 chr9 2135552 2135732 -115726895 - L1MB3 LINE L1 -89 6094 5915 3834 234 60 19 chr9 2135733 2136079 -115726548 - L1MDb LINE L1 -2292 3788 3458 1932 134 0 0 chr9 2136079 2136369 -115726258 + AluSx SINE Alu 3 292 -20 3834 234 60 19 chr9 2136369 2137213 -115725414 - L1MDb LINE L1 -2622 3458 2549 623 260 47 30 chr9 2137190 2137615 -115725012 - L1MDb LINE L1 -5170 900 463 * 276 279 93 8 chr9 2137738 2137867 -115724760 - L1MDb LINE L1 -5664 406 267 21 0 0 0 chr9 2138068 2138089 -115724538 + AT_rich Low_complexity Low_complexity 1 21 0 1869 150 0 16 chr9 2138445 2138759 -115723868 + AluJb SINE Alu 4 312 0 195 313 78 55 chr9 2138922 2139050 -115723577 - MER5B DNA MER1_type -21 157 27 333 262 24 0 chr9 2139356 2139440 -115723187 - L2 LINE L2 -4 3268 3183 408 250 22 0 chr9 2141068 2141160 -115721467 + MER58 DNA MER1_type 1 94 -247 223 317 158 17 chr9 2141699 2141819 -115720808 - L2 LINE L2 -17 3255 3119 521 228 70 82 chr9 2142164 2142493 -115720134 - L1ME4a LINE L1 -266 5855 5531 186 43 0 0 chr9 2142568 2142591 -115720036 + (TG)n Simple_repeat Simple_repeat 1 23 0 409 143 0 0 chr9 2144250 2144313 -115718314 - Tigger5 DNA MER2_type 0 2323 2261 444 200 0 12 chr9 2144344 2144424 -115718203 - Tigger5 DNA MER2_type -2244 79 1 2411 44 0 3 chr9 2145406 2145699 -115716928 - AluY SINE Alu -15 296 5 582 260 40 0 chr9 2146090 2146263 -115716364 + MER68 LTR ERV1 1 180 -382 428 200 124 119 chr9 2146298 2146508 -115716119 + MER68 LTR ERV1 351 603 -2 3451 200 64 9 chr9 2147470 2148398 -115714229 + L1M3 LINE L1 4509 5485 -698 330 196 0 0 chr9 2149168 2149260 -115713367 + (TGGA)n Simple_repeat Simple_repeat 1 92 0 231 36 0 0 chr9 2149547 2149575 -115713052 + (TG)n Simple_repeat Simple_repeat 2 29 0 2273 93 3 6 chr9 2149638 2149950 -115712677 + AluSp SINE Alu 1 311 -2 574 260 25 51 chr9 2151701 2151897 -115710730 - MIR3 SINE MIR -4 204 14 276 273 52 0 chr9 2153068 2153145 -115709482 + MER5A DNA MER1_type 5 85 -104 232 277 9 9 chr9 2153223 2153335 -115709292 + (CA)n Simple_repeat Simple_repeat 2 113 0 1284 189 0 26 chr9 2153652 2153942 -115708685 + AluJo SINE Alu 25 307 0 246 302 148 16 chr9 2154080 2154269 -115708358 - MIR SINE MIR -26 236 23 423 0 0 0 chr9 2155165 2155212 -115707415 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr9 2156306 2156329 -115706298 + AT_rich Low_complexity Low_complexity 1 23 0 298 274 71 0 chr9 2156983 2157096 -115705531 - Charlie8 DNA MER1_type -2253 164 44 239 298 21 21 chr9 2157352 2157446 -115705181 + MIR3 SINE MIR 113 206 -2 23 33 0 0 chr9 2159769 2159799 -115702828 + AT_rich Low_complexity Low_complexity 1 30 0 282 309 148 27 chr9 2160038 2160187 -115702440 - MIR SINE MIR -49 213 47 988 248 71 65 chr9 2160627 2160950 -115701677 + MER102a DNA MER1_type 1 325 -5 727 262 102 44 chr9 2161433 2161777 -115700850 - MLT1B LTR MaLR -26 364 1 652 260 39 14 chr9 2163626 2163834 -115698793 + MLT1A1 LTR MaLR 153 365 0 252 209 75 0 chr9 2164096 2164163 -115698464 - MLT1J LTR MaLR -341 170 99 27 29 0 0 chr9 2167050 2167084 -115695543 + AT_rich Low_complexity Low_complexity 1 34 0 71 106 0 0 chr9 2167166 2167307 -115695320 + AT_rich Low_complexity Low_complexity 1 141 0 195 311 59 37 chr9 2169148 2169283 -115693344 + MIR3 SINE MIR 30 167 -41 321 111 0 0 chr9 2169691 2169736 -115692891 + AluSg/x SINE Alu 206 250 -52 1208 158 0 21 chr9 2169736 2169958 -115692669 + AluSq SINE Alu 85 303 -10 2018 98 48 0 chr9 2169958 2170253 -115692374 + AluY SINE Alu 1 309 -2 1208 158 0 21 chr9 2170253 2170264 -115692363 + AluSq SINE Alu 303 313 0 388 270 79 101 chr9 2170264 2170631 -115691996 - Charlie7 DNA MER1_type -2253 359 1 370 225 163 31 chr9 2170631 2170760 -115691867 + MIR SINE MIR 89 234 -28 237 33 0 0 chr9 2170939 2170969 -115691658 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 184 280 264 8 chr9 2171161 2171286 -115691341 - L2 LINE L2 -33 3280 3124 2038 125 0 0 chr9 2171717 2172020 -115690607 + AluSx SINE Alu 1 303 -9 353 69 0 17 chr9 2173213 2173271 -115689356 + (TG)n Simple_repeat Simple_repeat 1 57 0 324 348 82 43 chr9 2173559 2173766 -115688861 + L3b LINE CR1 1366 1580 -3 691 239 0 7 chr9 2174378 2174520 -115688107 + MIR SINE MIR 58 198 -64 392 256 23 0 chr9 2175999 2176085 -115686542 + MIR SINE MIR 2 89 -173 2168 169 6 8 chr9 2176401 2176767 -115685860 + MLT1A1 LTR MaLR 1 365 0 678 121 0 0 chr9 2178151 2178267 -115684360 + (CTG)n Simple_repeat Simple_repeat 3 118 0 1176 150 59 24 chr9 2178863 2179117 -115683510 - MER33 DNA MER1_type -32 292 30 884 300 24 10 chr9 2179352 2179645 -115682982 - LTR16C LTR ERVL 0 491 195 475 303 45 11 chr9 2179818 2179996 -115682631 - MIR SINE MIR -59 203 20 2081 99 0 3 chr9 2185280 2185564 -115677063 + AluSx SINE Alu 1 283 -29 261 119 0 0 chr9 2185573 2185615 -115677012 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 1823 192 72 43 chr9 2186269 2186357 -115676270 + MLT1C LTR MaLR 1 85 -382 2253 86 3 0 chr9 2186357 2186659 -115675968 - AluSc SINE Alu -6 303 1 1823 192 72 43 chr9 2186659 2187012 -115675615 + MLT1C LTR MaLR 85 455 -12 327 351 73 26 chr9 2187134 2187325 -115675302 + MIR SINE MIR 35 234 -28 278 26 26 0 chr9 2187872 2187911 -115674716 + (TTTG)n Simple_repeat Simple_repeat 4 43 0 1455 191 44 86 chr9 2189869 2190277 -115672350 + MLT2B1 LTR ERVL 1 391 -129 4295 103 2 0 chr9 2243084 2243637 -115618990 - MER41A LTR ERV1 0 554 1 2233 89 0 7 chr9 2244142 2244435 -115618192 + AluSx SINE Alu 3 293 -19 724 183 8 38 chr9 2244443 2244574 -115618053 - FRAM SINE Alu -49 127 1 1080 32 0 0 chr9 2245070 2245194 -115617433 - L1PA4 LINE L1 -3 6152 6029 1042 173 6 0 chr9 2245217 2245385 -115617242 - AluJb SINE Alu -143 169 1 2583 102 8 25 chr9 2245629 2245812 -115616815 - THE1A LTR MaLR 0 355 179 2080 121 13 10 chr9 2245812 2246118 -115616509 + AluSx SINE Alu 1 307 -5 2583 102 8 25 chr9 2246118 2246295 -115616332 - THE1A LTR MaLR -176 179 1 180 245 0 0 chr9 2246584 2246637 -115615990 + (TATATG)n Simple_repeat Simple_repeat 1 53 0 6396 163 53 103 chr9 2247167 2247260 -115615367 + Tigger6b DNA MER2_type 4 100 -1497 2052 184 71 0 chr9 2247260 2247624 -115615003 - MLT1B LTR MaLR 0 390 1 6396 163 53 103 chr9 2247624 2248026 -115614601 + Tigger6b DNA MER2_type 100 521 -1076 2031 141 3 7 chr9 2248026 2248325 -115614302 + AluSx SINE Alu 1 298 -14 6396 163 53 103 chr9 2248325 2248846 -115613781 + Tigger6b DNA MER2_type 521 1067 -530 1830 121 27 40 chr9 2248846 2249143 -115613484 + AluSx SINE Alu 1 293 -19 2094 122 6 28 chr9 2249146 2249465 -115613162 + AluSx SINE Alu 1 312 0 6396 163 53 103 chr9 2249465 2249831 -115612796 + Tigger6b DNA MER2_type 1069 1297 -300 1538 182 18 14 chr9 2249831 2250111 -115612516 + AluJo SINE Alu 1 281 -31 6396 163 53 103 chr9 2250111 2250387 -115612240 + Tigger6b DNA MER2_type 1297 1585 -12 820 264 37 16 chr9 2250588 2250834 -115611793 + MIR SINE MIR 3 253 -9 224 229 0 0 chr9 2250854 2250902 -115611725 + (TAG)n Simple_repeat Simple_repeat 2 49 0 2438 71 0 0 chr9 2251855 2252151 -115610476 - AluSg SINE Alu -8 302 7 342 0 0 0 chr9 2252297 2252335 -115610292 + (T)n Simple_repeat Simple_repeat 1 38 0 1115 156 145 46 chr9 2252946 2252993 -115609634 - L1MB3 LINE L1 0 6183 6142 2305 105 3 6 chr9 2252993 2253307 -115609320 - AluSp SINE Alu 0 313 1 1115 156 145 46 chr9 2253307 2253541 -115609086 - L1MB3 LINE L1 -41 6142 5874 216 0 0 0 chr9 2254737 2254761 -115607866 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr9 2255292 2255314 -115607313 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr9 2256071 2256106 -115606521 + AT_rich Low_complexity Low_complexity 1 35 0 1374 103 5 5 chr9 2259343 2259527 -115603100 - U2 snRNA snRNA -1 187 4 21 0 0 0 chr9 2259656 2259677 -115602950 + AT_rich Low_complexity Low_complexity 1 21 0 294 306 32 16 chr9 2260548 2260672 -115601955 + Charlie8 DNA MER1_type 148 273 -2144 300 206 41 14 chr9 2260725 2260798 -115601829 + Charlie8 DNA MER1_type 2343 2417 0 577 282 4 73 chr9 2260885 2261119 -115601508 + MIR SINE MIR 3 220 -42 1196 311 153 46 chr9 2262434 2263647 -115598980 - L3 LINE CR1 -22 1555 213 190 324 121 44 chr9 2264313 2264495 -115598132 - L2 LINE L2 0 3272 3077 2016 93 76 0 chr9 2264596 2264886 -115597741 - AluSq SINE Alu 0 313 2 331 244 138 50 chr9 2266526 2266686 -115595941 - MIR SINE MIR -20 242 69 271 239 65 43 chr9 2266901 2266993 -115595634 - MIR3 SINE MIR -106 102 9 221 371 124 12 chr9 2269477 2269736 -115592891 - L2 LINE L2 -643 2671 2384 201 308 0 0 chr9 2269742 2269794 -115592833 + (TG)n Simple_repeat Simple_repeat 2 53 0 * 214 194 0 0 chr9 2269759 2269795 -115592832 + (TATG)n Simple_repeat Simple_repeat 3 38 0 550 157 102 0 chr9 2270280 2270388 -115592239 - MER103 DNA DNA -46 120 2 1930 143 3 19 chr9 2271214 2271529 -115591098 + AluJb SINE Alu 1 310 -2 2366 100 0 3 chr9 2272446 2272757 -115589870 - AluSp SINE Alu -3 310 1 189 0 0 0 chr9 2272759 2272780 -115589847 + (T)n Simple_repeat Simple_repeat 1 21 0 1576 159 0 22 chr9 2273159 2273430 -115589197 - AluJb SINE Alu -43 269 5 2414 71 3 0 chr9 2274131 2274428 -115588199 - AluSp SINE Alu -15 298 1 302 290 0 40 chr9 2277700 2277800 -115584827 + L1MC4 LINE L1 6608 6703 -1339 2247 106 10 3 chr9 2279060 2279371 -115583256 - AluSq SINE Alu 0 313 1 2202 92 28 0 chr9 2279383 2279667 -115582960 - AluSx SINE Alu -20 292 1 631 169 36 90 chr9 2280813 2280930 -115581697 - L1MD2 LINE L1 -17 6342 6235 2207 104 7 10 chr9 2280930 2281228 -115581399 - AluSg SINE Alu -13 297 1 631 169 36 90 chr9 2281228 2281276 -115581351 - L1MD2 LINE L1 -124 6235 6186 3001 138 72 23 chr9 2281598 2282154 -115580473 - L1MB2 LINE L1 -2 6169 5587 227 276 0 0 chr9 2282733 2282791 -115579836 + GA-rich Low_complexity Low_complexity 2 59 0 269 346 13 26 chr9 2282865 2283018 -115579609 + MIR SINE MIR 10 160 -102 2062 116 0 80 chr9 2283066 2283402 -115579225 - AluSx SINE Alu -3 309 1 550 217 9 0 chr9 2283535 2283641 -115578986 - MER5A DNA MER1_type -80 109 3 632 209 98 33 chr9 2283691 2283906 -115578721 + MER96B DNA MER1_type? 189 417 0 1703 172 3 21 chr9 2283971 2284262 -115578365 + AluJo SINE Alu 6 291 -21 33 25 0 0 chr9 2284262 2284302 -115578325 + AT_rich Low_complexity Low_complexity 1 40 0 653 190 0 0 chr9 2284373 2284473 -115578154 + AluS SINE Alu 1 100 -213 1903 231 120 33 chr9 2285209 2285785 -115576842 - MLT1E2 LTR MaLR 0 626 1 435 236 47 66 chr9 2286819 2287031 -115575596 + L1MC4a LINE L1 5630 5837 -1971 359 244 34 34 chr9 2287625 2287744 -115574883 + MER94 DNA DNA 1 119 -15 305 258 100 74 chr9 2290488 2290906 -115571721 - L1MC5 LINE L1 0 8042 7611 2281 69 7 36 chr9 2290938 2291244 -115571383 - AluY SINE Alu -14 297 1 198 292 101 11 chr9 2292147 2292236 -115570391 - MIR SINE MIR -62 200 104 1102 168 50 0 chr9 2293452 2293631 -115568996 + MER5A DNA MER1_type 1 188 -1 2062 132 0 3 chr9 2294786 2295075 -115567552 + AluSx SINE Alu 6 293 -19 470 174 55 9 chr9 2295094 2295203 -115567424 - MER110A LTR ERV1 0 468 355 554 182 73 0 chr9 2295296 2295406 -115567221 - MER110A LTR ERV1 -350 118 1 236 304 0 22 chr9 2295453 2295545 -115567082 - L1MC/D LINE L1 -1906 5902 5813 254 174 221 0 chr9 2295575 2295661 -115566966 - L1ME4a LINE L1 -5 6116 6012 4082 209 63 46 chr9 2295782 2295935 -115566692 + L1ME LINE L1 6 155 -6409 1934 168 129 31 chr9 2295935 2296323 -115566304 - MSTA LTR MaLR 0 428 3 8177 153 76 51 chr9 2296326 2297660 -115564967 - MSTA-int LTR MaLR -1 1579 199 2279 110 0 0 chr9 2297660 2297970 -115564657 - AluY SINE Alu 0 311 2 8177 153 76 51 chr9 2297970 2298173 -115564454 - MSTA-int LTR MaLR -1381 199 3 2220 139 150 5 chr9 2298175 2298549 -115564078 - MSTA LTR MaLR 0 428 1 4082 209 63 46 chr9 2298549 2300775 -115561852 + L1ME LINE L1 156 2570 -3994 1819 172 0 10 chr9 2300775 2301077 -115561550 - AluJo SINE Alu -7 305 7 4082 209 63 46 chr9 2301077 2301386 -115561241 + L1ME LINE L1 2570 2872 -3692 1284 201 108 2 chr9 2301427 2301886 -115560741 - L1ME1 LINE L1 -20 6164 5589 1740 216 41 19 chr9 2301890 2302530 -115560097 + L1ME LINE L1 5339 5988 -596 265 254 4 44 chr9 2302522 2302659 -115559968 - L1ME LINE L1 -288 5833 5706 * 2187 132 0 0 chr9 2302736 2303046 -115559581 - AluSx SINE Alu -2 310 1 2190 120 10 0 chr9 2304049 2304349 -115558278 - AluSx SINE Alu -9 303 1 1642 163 20 27 chr9 2304671 2304972 -115557655 - AluJo SINE Alu -13 299 1 440 177 54 39 chr9 2305444 2305574 -115557053 + MER104 DNA Tc2 36 167 -13 522 223 32 38 chr9 2305579 2305736 -115556891 - L1MC4a LINE L1 -1869 5939 5784 816 273 0 6 chr9 2306538 2306721 -115555906 - MIR SINE MIR -69 193 12 182 335 88 59 chr9 2306880 2307119 -115555508 + L2 LINE L2 2583 2828 -486 1291 200 77 0 chr9 2307136 2307436 -115555191 - MER33 DNA MER1_type -1 323 1 1021 181 33 0 chr9 2307446 2307628 -115554999 - MER5A DNA MER1_type -1 188 1 537 330 45 5 chr9 2307636 2307857 -115554770 + Charlie8 DNA MER1_type 1 230 -2187 2545 32 0 23 chr9 2307857 2308166 -115554461 - AluY SINE Alu -8 303 2 709 244 84 121 chr9 2308268 2308673 -115553954 + L2 LINE L2 2883 3272 0 372 222 40 20 chr9 2309563 2309662 -115552965 + MIR3 SINE MIR 108 208 0 643 234 102 24 chr9 2311289 2311494 -115551133 - MIR SINE MIR -32 230 10 1401 152 19 60 chr9 2311843 2312076 -115550551 - Tigger2 DNA MER2_type 0 2718 2496 2223 117 0 0 chr9 2312076 2312376 -115550251 + AluSx SINE Alu 1 300 -12 1401 152 19 60 chr9 2312376 2312411 -115550216 - Tigger2 DNA MER2_type -222 2496 2461 4766 133 32 1 chr9 2312477 2313197 -115549430 - Tigger2 DNA MER2_type -1974 744 3 406 274 41 45 chr9 2313291 2313554 -115549073 + MER57B LTR ERV1 67 322 -80 378 222 0 0 chr9 2313716 2313797 -115548830 + MER57A LTR ERV1 323 403 0 1335 272 60 8 chr9 2313864 2314228 -115548399 - LTR16C LTR ERVL -10 481 99 211 64 21 43 chr9 2315432 2315479 -115547148 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1504 140 42 45 chr9 2316308 2316572 -115546055 - L1PA15 LINE L1 -14 6151 5889 6401 156 29 17 chr9 2316635 2317960 -115544667 - L1MC1 LINE L1 0 6613 5272 8051 31 1 0 chr9 2317973 2319575 -115543052 + L1PA4 LINE L1 4553 6155 0 2845 108 13 5 chr9 2319575 2319972 -115542655 - MSTA LTR MaLR -28 400 1 6168 233 21 38 chr9 2319974 2320849 -115541778 - L1MC1 LINE L1 -2179 4247 3359 1809 133 33 0 chr9 2320849 2321119 -115541508 - AluJb SINE Alu -25 287 9 6168 233 21 38 chr9 2321119 2321270 -115541357 - L1MC1 LINE L1 -3067 3359 3207 2761 23 0 0 chr9 2321270 2321572 -115541055 + AluY SINE Alu 1 302 -9 6168 233 21 38 chr9 2321572 2322715 -115539912 - L1MC1 LINE L1 -3219 3207 2115 22 70 0 0 chr9 2322715 2322758 -115539869 + AT_rich Low_complexity Low_complexity 1 43 0 318 226 263 27 chr9 2322782 2322968 -115539659 - L1ME3A LINE L1 -10 6160 5931 235 281 0 0 chr9 2323235 2323292 -115539335 - L2 LINE L2 -50 3222 3166 644 262 36 6 chr9 2323610 2323778 -115538849 + MIR3 SINE MIR 34 206 -2 271 252 225 0 chr9 2324566 2324677 -115537950 - MIR SINE MIR -70 192 57 1969 155 3 0 chr9 2325522 2325819 -115536808 - AluJb SINE Alu -14 298 1 181 329 73 0 chr9 2327182 2327264 -115535363 + MIR SINE MIR 3 90 -172 256 253 99 11 chr9 2327373 2327464 -115535163 + MIR SINE MIR 162 260 -2 897 304 30 49 chr9 2328049 2328378 -115534249 - MLT1K LTR MaLR -264 324 2 225 374 24 0 chr9 2328382 2328465 -115534162 + MIR SINE MIR 60 144 -118 935 235 11 0 chr9 2328484 2328671 -115533956 - MER5A DNA MER1_type 0 189 1 563 228 55 118 chr9 2329050 2329133 -115533494 + MIR SINE MIR 15 102 -160 2287 87 3 0 chr9 2329133 2329420 -115533207 + AluSp SINE Alu 1 288 -25 191 59 0 29 chr9 2329423 2329457 -115533170 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 563 228 55 118 chr9 2329457 2329623 -115533004 + MIR SINE MIR 104 252 -10 513 252 65 7 chr9 2329787 2329942 -115532685 + MER103 DNA DNA 2 165 -1 1770 152 3 42 chr9 2332391 2332701 -115529926 - AluJo SINE Alu -14 298 1 347 321 22 0 chr9 2332720 2332854 -115529773 - MIR SINE MIR -75 187 51 2034 158 0 0 chr9 2333017 2333327 -115529300 + AluSx SINE Alu 1 310 -2 30 45 0 0 chr9 2333468 2333512 -115529115 + AT_rich Low_complexity Low_complexity 1 44 0 771 130 39 137 chr9 2333850 2334114 -115528513 + MER106B DNA MER1_type 1 1059 0 734 198 23 29 chr9 2334129 2334301 -115528326 - MER5B DNA MER1_type -7 171 1 370 291 158 0 chr9 2334336 2334463 -115528164 - MER117 DNA MER1_type -50 147 1 246 62 0 0 chr9 2335186 2335218 -115527409 + (GA)n Simple_repeat Simple_repeat 1 32 0 1470 250 97 24 chr9 2335239 2335787 -115526840 + L1ME3A LINE L1 5364 5951 -219 2386 84 0 0 chr9 2337222 2337521 -115525106 - AluSx SINE Alu -13 299 1 189 74 0 0 chr9 2339491 2339518 -115523109 + (TG)n Simple_repeat Simple_repeat 1 27 0 195 42 0 0 chr9 2339533 2339557 -115523070 + (GA)n Simple_repeat Simple_repeat 1 24 0 3402 257 85 67 chr9 2340015 2340910 -115521717 + L1MC4a LINE L1 5889 6766 -1042 713 136 18 0 chr9 2340910 2341020 -115521607 - L1MB5 LINE L1 0 6174 6063 3402 257 85 67 chr9 2341020 2341279 -115521348 + L1MC4a LINE L1 6766 7019 -789 1809 188 50 19 chr9 2341279 2341657 -115520970 + MLT1B LTR MaLR 1 390 0 3402 257 85 67 chr9 2341657 2342195 -115520432 + L1MC4a LINE L1 7019 7613 -195 1667 238 100 40 chr9 2342199 2342728 -115519899 + MLT1F1 LTR MaLR 3 567 0 443 198 32 76 chr9 2342760 2342917 -115519710 + L1MC4 LINE L1 7737 7886 -156 200 229 0 16 chr9 2342939 2343000 -115519627 + (TA)n Simple_repeat Simple_repeat 1 60 0 254 295 13 13 chr9 2343000 2343078 -115519549 + GA-rich Low_complexity Low_complexity 2 79 0 233 181 58 69 chr9 2343088 2343194 -115519433 + L1MD3 LINE L1 7922 8018 -21 2235 116 7 0 chr9 2343194 2343496 -115519131 - AluSp SINE Alu -9 304 1 233 181 58 69 chr9 2343496 2343518 -115519109 + L1MD3 LINE L1 8018 8039 0 3051 197 5 17 chr9 2343835 2344424 -115518203 - L1MB7 LINE L1 -9 6175 5594 2256 98 10 0 chr9 2345861 2346158 -115516469 - AluSx SINE Alu -12 300 1 558 317 42 0 chr9 2346849 2347016 -115515611 + L2 LINE L2 2980 3153 -160 1225 151 14 9 chr9 2347025 2347237 -115515390 + AluJo SINE Alu 86 298 -14 400 257 125 56 chr9 2347239 2347358 -115515269 + L2 LINE L2 3158 3290 -23 2332 115 0 0 chr9 2347358 2347662 -115514965 - AluSx SINE Alu -8 304 1 400 257 125 56 chr9 2347662 2347686 -115514941 + L2 LINE L2 3290 3311 -2 194 327 59 30 chr9 2347989 2348090 -115514537 - L2 LINE L2 -244 3069 2966 1745 227 33 85 chr9 2348107 2348675 -115513952 - MER77 LTR ERV1 -4 601 85 1544 241 56 53 chr9 2349078 2349197 -115513430 - MLT1H LTR MaLR -5 544 427 2583 89 60 20 chr9 2349197 2349547 -115513080 + THE1B LTR MaLR 1 364 0 1544 241 56 53 chr9 2349547 2349926 -115512701 - MLT1H LTR MaLR -122 427 1 456 277 117 26 chr9 2351218 2351449 -115511178 - MIR SINE MIR 0 262 11 485 283 40 7 chr9 2351576 2351728 -115510899 - LTR33A LTR ERVL 0 523 367 731 273 157 37 chr9 2352075 2352540 -115510087 - LTR33 LTR ERVL 0 521 1 1597 123 0 0 chr9 2353242 2353462 -115509165 + AluSq SINE Alu 1 220 -93 21 36 0 0 chr9 2353476 2353504 -115509123 + AT_rich Low_complexity Low_complexity 1 28 0 365 241 15 131 chr9 2353792 2353929 -115508698 - MIR3 SINE MIR -3 205 85 268 324 65 36 chr9 2354584 2354723 -115507904 + MIR3 SINE MIR 59 201 -7 403 269 135 55 chr9 2355844 2356127 -115506500 + MLT1I LTR MaLR 85 370 -39 199 333 0 31 chr9 2356299 2356395 -115506232 + L2 LINE L2 2616 2708 -606 186 275 0 0 chr9 2356876 2356945 -115505682 + (TATG)n Simple_repeat Simple_repeat 4 72 0 278 253 20 40 chr9 2358448 2358547 -115504080 - MER113 DNA MER1_type? -115 406 310 373 213 0 13 chr9 2358734 2358809 -115503818 + MIR3 SINE MIR 120 193 -15 368 309 38 51 chr9 2358983 2359139 -115503488 - MIR SINE MIR -69 139 9 652 296 117 34 chr9 2360174 2360803 -115501824 - L1MEd LINE L1 -4455 1855 1107 5945 88 21 3 chr9 2360803 2361569 -115501058 - LTR17 LTR ERV1 0 780 1 652 296 117 34 chr9 2361569 2361776 -115500851 - L1MEd LINE L1 -5203 1107 919 191 341 12 12 chr9 2362859 2362941 -115499686 - L2 LINE L2 0 3313 3232 299 261 9 36 chr9 2363492 2363603 -115499024 + CT-rich Low_complexity Low_complexity 4 111 0 460 186 41 105 chr9 2364165 2364358 -115498269 + MER69A DNA AcHobo 1 177 0 1132 291 78 18 chr9 2364524 2364961 -115497666 + LTR16B LTR ERVL 2 464 0 282 255 97 41 chr9 2365413 2365558 -115497069 - MER103 DNA DNA -3 163 11 773 198 48 39 chr9 2366100 2366307 -115496320 - L2 LINE L2 -1 3312 3104 670 258 32 26 chr9 2367409 2367599 -115495028 - MIR SINE MIR -59 203 13 21 0 0 0 chr9 2368504 2368525 -115494102 + AT_rich Low_complexity Low_complexity 1 21 0 2641 35 0 16 chr9 2368525 2368841 -115493786 - AluY SINE Alu 0 311 1 220 310 0 23 chr9 2369895 2369982 -115492645 + CT-rich Low_complexity Low_complexity 3 87 0 2979 70 123 2 chr9 2372283 2372683 -115489944 + LTR7 LTR ERV1 1 448 -2 378 73 18 0 chr9 2372685 2372740 -115489887 + HERVH LTR ERV1 1 56 -7657 295 258 57 69 chr9 2373240 2373399 -115489228 + MIR SINE MIR 98 254 -8 475 141 0 0 chr9 2373498 2373569 -115489058 - THE1B LTR MaLR 0 375 305 7624 52 2 1 chr9 2373570 2374581 -115488046 + L1PA5 LINE L1 5132 6148 -6 26 0 0 0 chr9 2374815 2374841 -115487786 + AT_rich Low_complexity Low_complexity 1 26 0 2007 112 9 37 chr9 2374841 2375162 -115487465 - THE1B LTR MaLR -49 315 4 4543 183 159 6 chr9 2375343 2376419 -115486208 - MER52A LTR ERV1 -380 1375 46 314 158 0 0 chr9 2377158 2377215 -115485412 - MER52A LTR ERV1 -1697 58 2 578 325 104 21 chr9 2378665 2379139 -115483488 - MLT1K LTR MaLR -4 584 52 3402 190 25 40 chr9 2379580 2380328 -115482299 + L1PA14 LINE L1 5422 6158 -3 1817 183 37 0 chr9 2380389 2380711 -115481916 + L1MB1 LINE L1 5830 6163 -5 210 240 0 20 chr9 2381082 2381132 -115481495 + CT-rich Low_complexity Low_complexity 2 50 0 274 321 102 15 chr9 2381924 2382061 -115480566 + MER5B DNA MER1_type 4 152 -26 218 236 0 14 chr9 2382104 2382176 -115480451 + CT-rich Low_complexity Low_complexity 3 73 0 295 116 0 0 chr9 2382193 2382236 -115480391 - MADE1 DNA Mariner -37 43 1 7817 82 4 1 chr9 2382776 2384550 -115478077 - L1PA7 LINE L1 0 6154 4376 3234 83 30 0 chr9 2384550 2384982 -115477645 + L1PA7 LINE L1 3924 4368 -1778 218 272 25 49 chr9 2385475 2385556 -115477071 - MER5B DNA MER1_type -98 80 2 765 280 20 0 chr9 2385599 2385799 -115476828 - MIR SINE MIR -1 261 58 655 75 0 0 chr9 2385911 2385991 -115476636 + MADE1 DNA Mariner 1 80 0 378 257 6 26 chr9 2386002 2386176 -115476451 + MER63A DNA MER1_type 1 208 -2 1864 141 0 0 chr9 2386499 2386792 -115475835 - AluJb SINE Alu 0 306 14 200 211 0 0 chr9 2387159 2387197 -115475430 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 943 313 40 52 chr9 2387600 2388105 -115474522 - MLT1K LTR MaLR -13 575 77 306 0 0 0 chr9 2388137 2388171 -115474456 + (CA)n Simple_repeat Simple_repeat 2 35 0 184 217 150 0 chr9 2388240 2388300 -115474327 + MIR SINE MIR 194 262 0 479 261 49 35 chr9 2388718 2388860 -115473767 - MIR SINE MIR -111 151 8 225 303 30 0 chr9 2388935 2389001 -115473626 - MIR SINE MIR -9 253 186 951 332 47 3 chr9 2389331 2389714 -115472913 - MLT1I LTR MaLR -7 402 3 419 338 25 25 chr9 2389840 2390000 -115472627 - L2 LINE L2 -3 3269 3110 305 273 39 47 chr9 2390262 2390390 -115472237 - MIR SINE MIR -58 204 78 22 35 0 0 chr9 2392138 2392167 -115470460 + AT_rich Low_complexity Low_complexity 1 29 0 745 158 8 24 chr9 2392170 2392297 -115470330 + AluJo SINE Alu 83 207 -105 267 318 26 3 chr9 2392886 2393041 -115469586 + MIR SINE MIR 49 247 -15 2108 117 3 7 chr9 2393041 2393339 -115469288 - AluSg SINE Alu -13 297 1 326 209 30 0 chr9 2394293 2394360 -115468267 - L3 LINE CR1 -110 1467 1399 589 329 74 21 chr9 2394564 2394984 -115467643 - L1MC4a LINE L1 -1914 5894 5453 1154 350 119 25 chr9 2395085 2396104 -115466523 - L3 LINE CR1 -166 1411 298 228 262 35 64 chr9 2396222 2396363 -115466264 - L1MC4a LINE L1 -1858 5950 5814 228 286 0 0 chr9 2397150 2397206 -115465421 - L3 LINE CR1 -1266 311 256 207 100 0 0 chr9 2397206 2397236 -115465391 + (A)n Simple_repeat Simple_repeat 1 30 0 260 288 32 64 chr9 2397828 2397953 -115464674 + MIR SINE MIR 14 134 -128 260 248 8 34 chr9 2398498 2398615 -115464012 - Charlie7 DNA MER1_type -1 2611 2498 459 0 0 0 chr9 2398651 2398702 -115463925 + (CA)n Simple_repeat Simple_repeat 2 52 0 321 283 9 9 chr9 2398705 2398811 -115463816 + (CATATA)n Simple_repeat Simple_repeat 2 107 0 22 56 0 0 chr9 2399596 2399632 -115462995 + AT_rich Low_complexity Low_complexity 1 36 0 1069 256 62 9 chr9 2399658 2399998 -115462629 - MLT1C LTR MaLR -104 363 6 1408 216 17 11 chr9 2401709 2401996 -115460631 + AluJo SINE Alu 4 292 -20 802 285 111 68 chr9 2401998 2402574 -115460053 + L1ME4a LINE L1 5519 6119 -2 378 280 61 23 chr9 2403513 2403645 -115458982 + MIR3 SINE MIR 50 186 -22 402 236 112 45 chr9 2404305 2404483 -115458144 + MIR SINE MIR 67 256 -6 214 203 188 16 chr9 2405008 2405072 -115457555 + MIR SINE MIR 178 252 -10 274 362 28 28 chr9 2405590 2405767 -115456860 - L2 LINE L2 -38 3275 3099 183 231 96 0 chr9 2406139 2406191 -115456436 + L2 LINE L2 3216 3272 0 402 262 28 19 chr9 2406402 2406509 -115456118 - L2 LINE L2 -1 3312 3205 1815 155 6 43 chr9 2406563 2406886 -115455741 + AluJb SINE Alu 1 311 -1 2390 225 53 47 chr9 2406949 2408170 -115454457 + L1ME1 LINE L1 4724 5967 -199 1264 184 0 0 chr9 2408170 2408376 -115454251 + AluJb SINE Alu 92 297 -15 569 205 29 35 chr9 2408383 2408554 -115454073 + L1ME1 LINE L1 5979 6148 -18 287 322 76 18 chr9 2408663 2408834 -115453793 - L2 LINE L2 -252 3061 2881 202 328 15 0 chr9 2408989 2409056 -115453571 + GA-rich Low_complexity Low_complexity 5 72 0 21 0 0 0 chr9 2410043 2410064 -115452563 + AT_rich Low_complexity Low_complexity 1 21 0 41371 43 3 11 chr9 2410085 2411998 -115450629 + L1PA4 LINE L1 3 1928 -4227 7425 36 4 0 chr9 2411998 2413017 -115449610 - L1PA3 LINE L1 -3 6152 5132 41371 43 3 11 chr9 2413017 2417305 -115445322 + L1PA4 LINE L1 1928 6155 0 453 312 35 70 chr9 2417856 2418225 -115444402 + L2 LINE L2 2917 3272 0 378 282 8 8 chr9 2418357 2418488 -115444139 - MER117 DNA MER1_type -54 143 13 1837 169 118 25 chr9 2418951 2419390 -115443237 + MLT2B1 LTR ERVL 1 480 -40 240 200 0 0 chr9 2419390 2419445 -115443182 + (TA)n Simple_repeat Simple_repeat 1 55 0 286 106 43 0 chr9 2419489 2419536 -115443091 + MLT2C2 LTR ERVL 416 464 0 536 240 60 21 chr9 2419809 2420019 -115442608 - MLT1L LTR MaLR -26 589 266 244 237 17 0 chr9 2420135 2420194 -115442433 - MIR SINE MIR -17 245 186 1480 178 73 0 chr9 2420317 2420592 -115442035 + AluJo SINE Alu 1 295 -17 2450 136 18 0 chr9 2420615 2421006 -115441621 - L1PA16 LINE L1 -9 6157 5760 12801 230 48 7 chr9 2421006 2424886 -115437741 - L1PA16 LINE L1 -645 5521 1485 680 228 64 0 chr9 2424889 2425060 -115437567 - MIR SINE MIR -64 198 17 454 243 29 0 chr9 2425080 2425216 -115437411 - MLT1L LTR MaLR -339 276 137 236 391 6 32 chr9 2425419 2425575 -115437052 + L2 LINE L2 3121 3272 0 252 254 0 0 chr9 2425879 2425934 -115436693 - MER45B DNA AcHobo 0 1040 986 * 1539 295 102 30 chr9 2425929 2426505 -115436122 - MER45C DNA AcHobo -320 633 16 2855 86 10 15 chr9 2426708 2427113 -115435514 + L1PA10 LINE L1 5761 6163 -5 1047 163 59 0 chr9 2427142 2427363 -115435264 + L1MA4 LINE L1 6062 6295 -5 1454 72 88 5 chr9 2427600 2427793 -115434834 - AluSc SINE Alu -16 293 85 344 319 125 7 chr9 2427853 2427997 -115434630 - MER45C DNA AcHobo -353 600 440 508 113 0 0 chr9 2427997 2428068 -115434559 - AluY SINE Alu -228 83 13 528 343 59 9 chr9 2428203 2428422 -115434205 + MIR SINE MIR 2 231 -31 201 147 0 0 chr9 2428815 2428849 -115433778 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 194 260 13 65 chr9 2429446 2429523 -115433104 + MER5A DNA MER1_type 3 75 -114 * 636 197 170 0 chr9 2429468 2429615 -115433012 - MER5A DNA MER1_type -9 180 9 335 260 67 0 chr9 2430013 2430117 -115432510 + MIR SINE MIR 104 214 -48 190 239 43 0 chr9 2430686 2430732 -115431895 - L2 LINE L2 -1 3312 3265 928 288 14 47 chr9 2430733 2431156 -115431471 + MLT1I LTR MaLR 1 409 0 406 276 124 39 chr9 2431179 2431436 -115431191 - L2 LINE L2 -112 3201 2923 1754 298 132 24 chr9 2431459 2432326 -115430301 - L2 LINE L2 -620 2694 1735 267 336 9 0 chr9 2433956 2434066 -115428561 + GA-rich Low_complexity Low_complexity 4 114 0 194 62 31 0 chr9 2436254 2436286 -115426341 + (TG)n Simple_repeat Simple_repeat 1 33 0 204 239 0 22 chr9 2436863 2436909 -115425718 + (CCTA)n Simple_repeat Simple_repeat 2 46 0 285 310 120 6 chr9 2437632 2437790 -115424837 - L2 LINE L2 -917 2397 2222 325 361 87 21 chr9 2437890 2438131 -115424496 - L3 LINE CR1 -48 1529 1273 188 273 23 0 chr9 2438219 2438263 -115424364 + L2 LINE L2 3142 3186 -86 383 314 36 6 chr9 2438322 2438493 -115424134 - MIR SINE MIR -49 213 40 351 323 43 18 chr9 2438965 2439045 -115423582 + MIR SINE MIR 63 140 -122 1598 140 23 57 chr9 2439045 2439345 -115423282 + AluJo SINE Alu 13 302 -10 351 323 43 18 chr9 2439345 2439428 -115423199 + MIR SINE MIR 140 230 -32 1777 100 46 0 chr9 2441981 2442242 -115420385 + L1PA15 LINE L1 5881 6153 -12 2267 87 10 10 chr9 2442242 2442542 -115420085 + AluSc SINE Alu 1 300 -9 180 0 0 0 chr9 2442549 2442569 -115420058 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1724 176 47 29 chr9 2442587 2442995 -115419632 + MLT1C LTR MaLR 51 465 -2 2131 91 0 70 chr9 2443819 2443962 -115418665 + AluSg SINE Alu 1 152 -158 207 0 0 0 chr9 2443962 2443985 -115418642 + (TA)n Simple_repeat Simple_repeat 1 23 0 2131 91 0 70 chr9 2443985 2444170 -115418457 + AluSg SINE Alu 152 306 -4 2654 92 20 8 chr9 2445964 2446357 -115416270 - L1PA13 LINE L1 -2 6161 5764 2495 152 16 28 chr9 2446421 2446854 -115415773 - MSTA LTR MaLR 0 428 1 252 311 67 17 chr9 2447852 2447971 -115414656 + L1ME3A LINE L1 6018 6142 -28 21 0 0 0 chr9 2448253 2448274 -115414353 + AT_rich Low_complexity Low_complexity 1 21 0 257 172 151 0 chr9 2448308 2448401 -115414226 + L1ME LINE L1 5682 5788 -374 180 262 24 0 chr9 2448736 2448778 -115413849 - L3 LINE CR1 -2 1575 1533 29 60 0 0 chr9 2448793 2448843 -115413784 + AT_rich Low_complexity Low_complexity 1 50 0 2287 94 0 3 chr9 2449079 2449376 -115413251 - AluSq SINE Alu -12 301 6 466 350 75 52 chr9 2449448 2449983 -115412644 - L3 LINE CR1 -51 1526 980 342 354 161 32 chr9 2450142 2450614 -115412013 - L3 LINE CR1 -1044 533 1 23 33 0 0 chr9 2450643 2450673 -115411954 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 2450723 2450746 -115411881 + AT_rich Low_complexity Low_complexity 1 23 0 213 163 0 0 chr9 2450774 2450823 -115411804 + (TA)n Simple_repeat Simple_repeat 1 49 0 1739 187 0 13 chr9 2450919 2451219 -115411408 - AluJo SINE Alu -13 299 4 258 56 0 0 chr9 2451444 2451480 -115411147 + (TA)n Simple_repeat Simple_repeat 2 37 0 39 22 0 0 chr9 2451482 2451528 -115411099 + AT_rich Low_complexity Low_complexity 1 46 0 2211 119 3 3 chr9 2451539 2451851 -115410776 - AluSq SINE Alu -1 312 1 200 315 0 0 chr9 2451867 2451921 -115410706 + A-rich Low_complexity Low_complexity 2 55 0 21 82 0 0 chr9 2451927 2451976 -115410651 + AT_rich Low_complexity Low_complexity 1 49 0 1115 242 11 0 chr9 2451993 2452266 -115410361 + Charlie4a DNA MER1_type 201 476 -32 1353 267 144 11 chr9 2453088 2453749 -115408878 + L2 LINE L2 2549 3311 -2 337 174 0 23 chr9 2454286 2454372 -115408255 + CT-rich Low_complexity Low_complexity 2 85 0 1761 162 10 23 chr9 2454372 2454674 -115407953 - AluJo SINE Alu -14 298 1 317 284 30 8 chr9 2454677 2454811 -115407816 + CT-rich Low_complexity Low_complexity 5 141 0 3351 153 23 22 chr9 2455922 2455985 -115406642 - MER7C DNA MER2_type -2426 602 541 2571 58 0 0 chr9 2455985 2456293 -115406334 + AluY SINE Alu 1 308 -3 3351 153 23 22 chr9 2456293 2456830 -115405797 - MER7C DNA MER2_type -2487 541 1 1246 276 53 29 chr9 2457153 2457606 -115405021 + LTR16C LTR ERVL 1 464 -27 1082 270 59 23 chr9 2457633 2458074 -115404553 + ERVL LTR ERVL 685 1141 -3855 689 287 7 6 chr9 2458094 2458381 -115404246 + ERVL LTR ERVL 2565 2912 -2852 1763 349 31 35 chr9 2458410 2459839 -115402788 + ERVL LTR ERVL 3979 4979 -17 762 364 24 12 chr9 2459904 2460330 -115402297 + LTR16B LTR ERVL 34 464 0 786 156 7 22 chr9 2460383 2460518 -115402109 + FLAM_C SINE Alu 1 133 0 5775 53 10 3 chr9 2460638 2461367 -115401260 - L1PA5 LINE L1 -1 6153 5420 2066 108 35 0 chr9 2462512 2462800 -115399827 + AluSx SINE Alu 1 298 -14 509 283 88 0 chr9 2462824 2462983 -115399644 + MER5B DNA MER1_type 4 176 -2 370 294 115 23 chr9 2463320 2463538 -115399089 + MLT1L LTR MaLR 360 597 -18 2134 118 7 3 chr9 2463542 2463847 -115398780 - AluSx SINE Alu -6 306 1 461 264 39 0 chr9 2463916 2464045 -115398582 - MIR SINE MIR -48 214 81 180 247 173 12 chr9 2464816 2464897 -115397730 + MIR SINE MIR 127 220 -42 968 226 102 37 chr9 2465121 2465524 -115397103 + MLT1C LTR MaLR 6 434 -33 191 77 0 0 chr9 2465525 2465551 -115397076 + MIR SINE MIR 120 145 -117 391 288 106 7 chr9 2465627 2465829 -115396798 - MIR SINE MIR 0 262 2 2682 36 0 0 chr9 2466435 2466742 -115395885 + AluY SINE Alu 1 307 -4 252 333 49 24 chr9 2467043 2467166 -115395461 - L2 LINE L2 -443 2871 2746 802 264 60 87 chr9 2467313 2467749 -115394878 - L2 LINE L2 -786 2528 2105 993 260 66 27 chr9 2468178 2468585 -115394042 + L1MC3 LINE L1 5863 6285 -1500 494 284 14 14 chr9 2468601 2468742 -115393885 + L1MD3 LINE L1 7154 7294 -701 1776 133 68 11 chr9 2468742 2469006 -115393621 - AluSx SINE Alu -27 285 7 2992 204 58 133 chr9 2469012 2469936 -115392691 + L1MD3 LINE L1 6291 7212 -596 331 269 65 0 chr9 2469936 2470044 -115392583 + MLT1F1 LTR MaLR 1 115 -452 2992 204 58 133 chr9 2470044 2470278 -115392349 + L1MD3 LINE L1 7212 7462 -346 501 134 47 12 chr9 2470305 2470475 -115392152 + L1MD3 LINE L1 7755 7982 -13 222 37 0 0 chr9 2473486 2473513 -115389114 + (CA)n Simple_repeat Simple_repeat 2 28 0 264 264 103 35 chr9 2473580 2473667 -115388960 - L2 LINE L2 -31 3241 3149 1868 151 13 23 chr9 2474883 2475182 -115387445 - AluJb SINE Alu -16 296 1 192 77 0 0 chr9 2475273 2475299 -115387328 + (T)n Simple_repeat Simple_repeat 1 26 0 593 296 35 6 chr9 2475568 2475737 -115386890 + MIR SINE MIR 48 221 -41 192 284 68 14 chr9 2477808 2477882 -115384745 - MIR SINE MIR 0 262 185 321 272 88 24 chr9 2477981 2478106 -115384521 + MIR SINE MIR 118 250 -12 301 215 89 13 chr9 2480178 2480257 -115382370 - MIR SINE MIR 0 262 178 1698 188 7 16 chr9 2481972 2482280 -115380347 + AluJo SINE Alu 1 305 -7 902 197 53 61 chr9 2482333 2482561 -115380066 + MIR SINE MIR 7 232 -30 22 35 0 0 chr9 2483454 2483483 -115379144 + AT_rich Low_complexity Low_complexity 1 29 0 2277 88 3 0 chr9 2484533 2484828 -115377799 + AluSg SINE Alu 1 296 -14 333 0 0 0 chr9 2486230 2486267 -115376360 + (CCCTAA)n Simple_repeat Simple_repeat 5 41 0 22 0 0 0 chr9 2486390 2486412 -115376215 + AT_rich Low_complexity Low_complexity 1 22 0 262 143 14 100 chr9 2487490 2487630 -115374997 + (TATAA)n Simple_repeat Simple_repeat 1 128 0 24 0 0 0 chr9 2487734 2487758 -115374869 + AT_rich Low_complexity Low_complexity 1 24 0 671 236 94 29 chr9 2487920 2488196 -115374431 - L1M4 LINE L1 -3356 2790 2497 961 289 66 29 chr9 2488286 2488846 -115373781 - L1MC4a LINE L1 -1899 5909 5324 2382 82 0 0 chr9 2488846 2489149 -115373478 - AluY SINE Alu -8 303 1 961 289 66 29 chr9 2489149 2489179 -115373448 - L1MC4a LINE L1 -2484 5324 5297 366 239 77 26 chr9 2489277 2489394 -115373233 + MARNA DNA Mariner 286 408 -178 206 261 31 0 chr9 2489738 2489803 -115372824 + (TATG)n Simple_repeat Simple_repeat 4 70 0 312 298 93 15 chr9 2492724 2492819 -115369808 - L1ME3A LINE L1 -223 5947 5861 843 240 34 5 chr9 2492819 2493027 -115369600 - MER58C DNA MER1_type 0 215 2 312 298 93 15 chr9 2493027 2493136 -115369491 - L1ME3A LINE L1 -309 5861 5727 588 138 62 8 chr9 2493776 2493906 -115368721 - L1MB2 LINE L1 -2 6169 6033 307 339 18 0 chr9 2494692 2494804 -115367823 - MIR SINE MIR -70 192 79 252 0 0 0 chr9 2495571 2495599 -115367028 + (TTTTTG)n Simple_repeat Simple_repeat 2 29 0 2195 118 3 0 chr9 2495800 2496096 -115366531 + AluSx SINE Alu 1 297 -15 243 329 24 0 chr9 2496386 2496468 -115366159 + MIR SINE MIR 179 262 0 216 329 200 0 chr9 2496751 2496891 -115365736 + MIR3 SINE MIR 20 187 -21 229 94 0 0 chr9 2497794 2497826 -115364801 + U6 snRNA snRNA 1 32 -75 188 148 0 0 chr9 2498293 2498320 -115364307 + L2 LINE L2 3263 3289 -24 210 143 0 0 chr9 2498493 2498528 -115364099 - MIR SINE MIR -14 248 214 1155 267 122 13 chr9 2501219 2501597 -115361030 - MLT1G1 LTR MaLR -176 419 1 1847 161 10 22 chr9 2502686 2502997 -115359630 - AluJo SINE Alu -5 307 1 2351 82 0 0 chr9 2503092 2503385 -115359242 - AluY SINE Alu -18 293 1 2200 92 0 0 chr9 2504099 2504381 -115358246 - AluY SINE Alu -29 282 1 319 338 76 6 chr9 2504470 2504627 -115358000 + MIR SINE MIR 40 207 -55 795 202 83 99 chr9 2504773 2505219 -115357408 + LTR37B LTR ERV1 6 444 -24 2061 117 45 48 chr9 2505300 2505676 -115356951 + THE1C LTR MaLR 1 375 0 391 305 22 48 chr9 2506771 2506938 -115355689 + MIR3 SINE MIR 5 177 -31 368 205 68 43 chr9 2506968 2507084 -115355543 + LTR8 LTR ERV1 1 119 -572 260 33 101 0 chr9 2507084 2507128 -115355499 - MLT2A1 LTR ERVL 0 444 402 481 247 0 23 chr9 2507243 2507417 -115355210 + (TATATG)n Simple_repeat Simple_repeat 3 172 0 353 39 19 0 chr9 2507418 2507470 -115355157 - MLT2A1 LTR ERVL -391 53 1 3011 74 0 7 chr9 2507535 2507548 -115355079 - MLT2A1 LTR ERVL -40 404 392 336 102 0 0 chr9 2507548 2507597 -115355030 + (TG)n Simple_repeat Simple_repeat 2 50 0 3011 74 0 7 chr9 2507597 2507990 -115354637 - MLT2A1 LTR ERVL -52 392 1 1853 156 49 138 chr9 2507990 2508649 -115353978 + LTR8A LTR ERV1 128 727 0 643 237 24 6 chr9 2508926 2509095 -115353532 + MER69A DNA AcHobo 3 174 -3 312 332 54 73 chr9 2509333 2509592 -115353035 + MIR SINE MIR 3 256 -6 370 353 62 12 chr9 2509746 2509987 -115352640 + MLT1J LTR MaLR 158 410 -101 840 191 26 0 chr9 2510015 2510167 -115352460 - MER5A DNA MER1_type -30 159 4 296 205 12 12 chr9 2510170 2510253 -115352374 + MLT1J LTR MaLR 416 498 -13 258 188 0 0 chr9 2510349 2510397 -115352230 - L2 LINE L2 -3 3310 3263 787 176 79 0 chr9 2510584 2510749 -115351878 - MER5B DNA MER1_type 0 178 1 187 217 196 33 chr9 2510760 2510852 -115351775 - MIR3 SINE MIR -90 118 12 313 288 136 33 chr9 2511236 2511479 -115351148 - L3 LINE CR1 -2 1575 1308 1333 273 53 68 chr9 2512172 2512851 -115349776 - MER21B LTR ERV1 -171 692 24 867 329 106 20 chr9 2513289 2513782 -115348845 - L3 LINE CR1 -78 1499 965 303 242 65 81 chr9 2514068 2514192 -115348435 + MLT1K LTR MaLR 380 501 -87 809 280 100 11 chr9 2514192 2514571 -115348056 - MER95 LTR ERV 0 431 19 518 290 54 67 chr9 2514579 2514910 -115347717 - MER57-int LTR ERV1 -479 7337 7011 405 190 13 0 chr9 2515115 2515194 -115347433 + Tigger5 DNA MER2_type 1 80 -2243 313 217 43 0 chr9 2515194 2515263 -115347364 - Tigger5 DNA MER2_type -5 2318 2247 272 262 0 36 chr9 2515259 2515343 -115347284 + Tigger5 DNA MER2_type 2243 2323 0 * 297 0 0 0 chr9 2516410 2516443 -115346184 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1484 162 68 54 chr9 2516448 2516726 -115345901 - AluJo SINE Alu -30 282 1 286 313 36 23 chr9 2516970 2517235 -115345392 - MER57-int LTR ERV1 -1390 6147 5018 655 293 34 81 chr9 2517435 2518347 -115344280 - MER57-int LTR ERV1 -1778 5759 2017 2445 138 74 5 chr9 2518685 2519105 -115343522 - LTR47A LTR ERVL 0 452 4 2489 68 3 3 chr9 2520306 2520616 -115342011 - AluY SINE Alu -1 310 1 348 316 13 19 chr9 2520798 2520953 -115341674 - MER57-int LTR ERV1 -5429 1372 1219 5344 143 21 25 chr9 2521246 2522003 -115340624 - L1PA15 LINE L1 -1 6164 5425 1924 149 0 17 chr9 2522003 2522331 -115340296 - AluSg SINE Alu 0 310 1 5344 143 21 25 chr9 2522331 2522739 -115339888 - L1PA15 LINE L1 -740 5425 5017 15252 142 11 26 chr9 2522747 2523992 -115338635 - L1PA10 LINE L1 0 6168 4906 2212 128 0 0 chr9 2523992 2524290 -115338337 + AluSx SINE Alu 1 298 -14 15252 142 11 26 chr9 2524290 2526618 -115336009 - L1PA10 LINE L1 -1262 4906 2645 705 189 0 8 chr9 2526618 2526745 -115335882 - THE1B LTR MaLR 0 364 239 878 314 116 16 chr9 2526776 2527209 -115335418 - L3 LINE CR1 -901 676 201 307 347 5 24 chr9 2528180 2528365 -115334262 + MIR SINE MIR 36 212 -50 1468 179 40 27 chr9 2528984 2529285 -115333342 + AluSx SINE Alu 1 305 -7 3363 144 47 66 chr9 2529499 2530071 -115332556 + LTR8A LTR ERV1 1 557 -170 1715 194 7 13 chr9 2530071 2530381 -115332246 + AluJb SINE Alu 1 308 -4 3363 144 47 66 chr9 2530381 2530549 -115332078 + LTR8A LTR ERV1 557 727 0 1107 228 72 79 chr9 2530853 2531272 -115331355 + L2 LINE L2 2636 3054 -259 1583 219 36 11 chr9 2531272 2531637 -115330990 + MLT1A2 LTR MaLR 1 374 0 1107 228 72 79 chr9 2531637 2531886 -115330741 + L2 LINE L2 3054 3303 -10 350 317 63 55 chr9 2531886 2532052 -115330575 - L1ME LINE L1 -404 5717 5554 1841 179 7 0 chr9 2532052 2532354 -115330273 + AluJb SINE Alu 1 304 -8 350 317 63 55 chr9 2532354 2532644 -115329983 - L1ME LINE L1 -567 5554 5257 447 339 28 24 chr9 2532860 2533108 -115329519 - L1ME LINE L1 -1124 5022 4774 2134 144 0 0 chr9 2533482 2533794 -115328833 - AluSx SINE Alu 0 312 1 1900 188 86 46 chr9 2533983 2534087 -115328540 - LTR49 LTR ERV1 0 595 497 2623 128 36 5 chr9 2534087 2534502 -115328125 + MSTA LTR MaLR 1 428 0 1900 188 86 46 chr9 2534502 2534957 -115327670 - LTR49 LTR ERV1 -98 497 14 2038 127 0 0 chr9 2534957 2535272 -115327355 - AluSx SINE Alu 0 315 1 2007 146 33 0 chr9 2535701 2536003 -115326624 - AluSx SINE Alu 0 312 1 185 41 41 122 chr9 2536330 2536379 -115326248 - MIR3 SINE MIR -32 176 132 2553 191 62 61 chr9 2536408 2537101 -115325526 + LTR8A LTR ERV1 34 727 0 262 236 28 47 chr9 2537140 2537246 -115325381 + L1MC4 LINE L1 7899 8002 -40 1191 171 19 27 chr9 2537389 2537511 -115325116 + MER34B LTR ERV1 1 122 -443 2478 148 130 11 chr9 2537511 2537719 -115324908 + LTR49 LTR ERV1 1 183 -412 249 33 0 0 chr9 2537719 2537749 -115324878 + (CA)n Simple_repeat Simple_repeat 2 31 0 2478 148 130 11 chr9 2537749 2538072 -115324555 + LTR49 LTR ERV1 183 595 0 1191 171 19 27 chr9 2538072 2538206 -115324421 + MER34B LTR ERV1 122 255 -310 2210 151 26 3 chr9 2538208 2538592 -115324035 - MER57A LTR ERV1 -3 400 8 267 91 23 0 chr9 2538593 2538637 -115323990 + MER34B LTR ERV1 251 295 -270 2418 179 33 81 chr9 2538771 2539414 -115323213 - LTR9 LTR ERV1 0 612 1 1557 170 44 11 chr9 2539414 2539684 -115322943 - AluJo SINE Alu -33 279 1 1309 124 21 8 chr9 2540156 2540386 -115322241 + MER34B LTR ERV1 303 535 -30 1257 195 112 57 chr9 2540386 2540825 -115321802 + LTR56 LTR ERV1 1 437 0 1963 188 91 117 chr9 2540972 2541717 -115320910 + LTR8A LTR ERV1 2 727 0 2726 144 43 34 chr9 2542180 2542750 -115319877 - LTR49 LTR ERV1 -17 636 1 * 2825 159 37 12 chr9 2542750 2543260 -115319367 - MER34C LTR ERV1 -24 561 39 2742 100 47 10 chr9 2543349 2543797 -115318830 + LTR56 LTR ERV1 6 437 0 2187 122 0 3 chr9 2543977 2544281 -115318346 - AluSg SINE Alu -7 303 1 848 229 92 42 chr9 2544375 2544615 -115318012 + MLT1B LTR MaLR 3 254 -136 9677 202 15 18 chr9 2544626 2547076 -115315551 - L1P4 LINE L1 -588 5578 3141 901 261 35 0 chr9 2547219 2547476 -115315151 + Charlie5 DNA MER1_type 2 267 -2345 197 65 32 0 chr9 2547477 2547508 -115315119 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 683 176 8 25 chr9 2547511 2547630 -115314997 - AluJb SINE Alu -194 118 2 1245 239 25 28 chr9 2547635 2547804 -115314823 + Charlie5 DNA MER1_type 256 425 -2199 1668 150 221 11 chr9 2547804 2547972 -115314655 - MSTA LTR MaLR 0 428 297 186 43 0 0 chr9 2547972 2547995 -115314632 + (GA)n Simple_repeat Simple_repeat 1 23 0 1668 150 221 11 chr9 2547995 2548179 -115314448 - MSTA LTR MaLR -131 297 2 1245 239 25 28 chr9 2548179 2548336 -115314291 + Charlie5 DNA MER1_type 425 581 -2043 1924 181 111 2 chr9 2548532 2549001 -115313626 + Charlie5 DNA MER1_type 924 1443 -1169 276 222 50 119 chr9 2549244 2549496 -115313131 - LTR37A LTR ERV1 -165 261 26 2449 124 55 6 chr9 2549496 2549843 -115312784 - THE1B LTR MaLR 0 364 1 2673 156 27 9 chr9 2550052 2550502 -115312125 - MER65C LTR ERV1 -2 459 2 2371 86 0 7 chr9 2550949 2551252 -115311375 + AluY SINE Alu 2 302 -9 268 167 21 0 chr9 2551298 2551346 -115311281 + MLT1E2 LTR MaLR 2 50 -604 2104 161 76 55 chr9 2551373 2551691 -115310936 + MER31A LTR ERV1 1 334 -151 2584 39 6 6 chr9 2551691 2552002 -115310625 - AluY SINE Alu 0 311 1 2104 161 76 55 chr9 2552002 2552155 -115310472 + MER31A LTR ERV1 334 482 -3 1569 214 122 57 chr9 2552164 2552640 -115309987 + MLT1E2 LTR MaLR 120 626 0 3836 110 15 19 chr9 2552737 2553263 -115309364 - MER1A DNA MER1_type -3 524 1 274 257 112 62 chr9 2553325 2553504 -115309123 - MIR SINE MIR -15 247 60 2052 175 77 44 chr9 2553560 2554012 -115308615 - MLT1C LTR MaLR 0 467 1 203 365 0 0 chr9 2554520 2554605 -115308022 - MIR SINE MIR -8 254 170 2429 86 0 0 chr9 2554822 2555123 -115307504 - AluSp SINE Alu -12 301 1 537 280 33 22 chr9 2555402 2555584 -115307043 - MIR SINE MIR -51 211 28 1906 249 50 21 chr9 2555693 2556214 -115306413 - MLT1F LTR MaLR 0 542 7 3843 131 24 15 chr9 2556216 2556805 -115305822 + LTR49 LTR ERV1 1 594 -1 267 208 10 146 chr9 2557062 2557158 -115305469 + MIR3 SINE MIR 96 178 -30 3349 130 45 2 chr9 2557239 2557730 -115304897 + MER41E LTR ERV1 1 512 0 211 321 38 38 chr9 2557766 2557897 -115304730 - MIR SINE MIR -58 150 20 232 250 17 0 chr9 2557975 2558035 -115304592 + (CTA)n Simple_repeat Simple_repeat 2 62 0 201 282 97 65 chr9 2558087 2558211 -115304416 - MIR SINE MIR -82 180 53 523 283 19 47 chr9 2558957 2559147 -115303480 - MIR SINE MIR -51 211 27 466 241 62 53 chr9 2559160 2559354 -115303273 - MIR SINE MIR -19 243 49 1461 231 89 100 chr9 2559424 2559723 -115302904 + L2 LINE L2 346 647 -2666 3643 158 82 32 chr9 2559723 2560415 -115302212 + LTR8A LTR ERV1 1 727 0 1461 231 89 100 chr9 2560415 2561194 -115301433 + L2 LINE L2 647 3308 -5 245 106 0 43 chr9 2561499 2561546 -115301081 + (CATA)n Simple_repeat Simple_repeat 1 45 0 243 216 0 54 chr9 2561547 2561597 -115301030 - L1MC4 LINE L1 -1342 6700 6654 1901 152 0 16 chr9 2561597 2561900 -115300727 - AluJo SINE Alu -6 306 9 243 216 0 54 chr9 2561900 2561923 -115300704 - L1MC4 LINE L1 -1388 6654 6631 605 292 11 11 chr9 2562592 2562770 -115299857 + MIR SINE MIR 8 185 -77 631 291 80 37 chr9 2563075 2563425 -115299202 - MLT1I LTR MaLR -38 371 7 268 326 121 7 chr9 2563494 2563635 -115298992 - MIR SINE MIR 0 262 106 1841 142 6 49 chr9 2563640 2563965 -115298662 + AluJb SINE Alu 1 311 -1 361 273 175 0 chr9 2564140 2564283 -115298344 + MER117 DNA MER1_type 4 171 -26 192 298 0 0 chr9 2564299 2564356 -115298271 + MIR SINE MIR 90 146 -62 2302 109 0 6 chr9 2564673 2564984 -115297643 - AluSx SINE Alu 0 312 4 801 302 67 27 chr9 2565125 2565453 -115297174 - LTR33 LTR ERVL -8 513 173 923 215 24 29 chr9 2566267 2566472 -115296155 - MER3 DNA MER1_type 0 209 6 413 294 123 0 chr9 2566636 2566806 -115295821 - MIR SINE MIR 0 262 72 232 234 62 0 chr9 2566810 2566874 -115295753 + MER116 DNA Mariner 11 78 -2 208 174 196 0 chr9 2566876 2566922 -115295705 - MIR SINE MIR -183 79 25 195 256 171 0 chr9 2566965 2567047 -115295580 + MIR SINE MIR 157 252 -10 761 111 151 58 chr9 2567649 2567789 -115294838 + MER53 DNA DNA 1 161 -28 1010 230 56 90 chr9 2567789 2568167 -115294460 + MLT1A1 LTR MaLR 1 365 0 761 111 151 58 chr9 2568167 2568198 -115294429 + MER53 DNA DNA 161 188 -1 753 212 35 6 chr9 2568364 2568534 -115294093 + MER5A DNA MER1_type 4 178 -11 413 306 50 25 chr9 2568544 2568704 -115293923 + MIR SINE MIR 25 188 -74 1042 204 37 28 chr9 2569239 2569455 -115293172 - MER20 DNA MER1_type -1 218 1 1026 203 20 15 chr9 2569565 2569793 -115292834 - AluJo SINE Alu 0 313 85 424 275 67 17 chr9 2569802 2569922 -115292705 - MIR SINE MIR -111 151 26 460 287 28 58 chr9 2571031 2571265 -115291362 + MIR SINE MIR 20 238 -24 221 311 59 42 chr9 2571269 2571388 -115291239 + MIR SINE MIR 106 226 -36 318 311 120 18 chr9 2571678 2571845 -115290782 + MER91B DNA MER1_type 1 184 -6 432 269 168 0 chr9 2572136 2572285 -115290342 + MIR SINE MIR 20 193 -69 22 0 0 0 chr9 2572307 2572329 -115290298 + AT_rich Low_complexity Low_complexity 1 22 0 1591 51 51 0 chr9 2572609 2572806 -115289821 - L1PA4 LINE L1 -2 6153 5947 2064 162 3 26 chr9 2573007 2573352 -115289275 - MER1B DNA MER1_type 0 337 1 327 257 95 19 chr9 2574400 2574505 -115288122 + MARNA DNA Mariner 66 178 -408 499 307 70 23 chr9 2574590 2574805 -115287822 + MARNA DNA Mariner 313 537 -49 423 264 75 87 chr9 2575133 2575688 -115286939 + LTR50 LTR ERVL 1 520 -3 351 221 75 29 chr9 2576928 2577085 -115285542 + MLT1H LTR MaLR 12 177 -334 385 245 47 63 chr9 2577194 2577380 -115285247 + MLT1H LTR MaLR 333 530 -19 125 81 0 0 chr9 2577406 2577736 -115284891 + AT_rich Low_complexity Low_complexity 1 300 0 111 89 0 0 chr9 2577740 2578033 -115284594 + AT_rich Low_complexity Low_complexity 1 293 0 566 277 135 31 chr9 2578177 2578466 -115284161 + L2 LINE L2 2995 3313 0 23 0 0 0 chr9 2579179 2579202 -115283425 + AT_rich Low_complexity Low_complexity 1 23 0 286 244 47 110 chr9 2579680 2579807 -115282820 - MIR3 SINE MIR -53 155 37 461 239 92 8 chr9 2580237 2580367 -115282260 + MIR SINE MIR 14 154 -108 215 326 76 22 chr9 2583263 2583355 -115279272 - L2 LINE L2 -44 3228 3132 819 284 47 0 chr9 2583779 2584015 -115278612 - L1MC/D LINE L1 -2045 5763 5517 496 263 56 15 chr9 2584018 2584264 -115278363 - L1MC/D LINE L1 -748 5398 5220 330 213 118 66 chr9 2584391 2584527 -115278100 - L1MC/D LINE L1 -1156 4990 4848 2085 142 0 16 chr9 2584865 2585175 -115277452 + AluSx SINE Alu 1 305 -7 2288 114 0 0 chr9 2585230 2585529 -115277098 - AluSx SINE Alu -13 299 1 264 299 123 75 chr9 2585767 2585824 -115276803 + L3 LINE CR1 1380 1433 -144 2899 89 5 5 chr9 2585824 2586204 -115276423 - L1PA8 LINE L1 -1 6171 5792 264 299 123 75 chr9 2586204 2586333 -115276294 + L3 LINE CR1 1433 1575 -2 301 211 132 0 chr9 2586678 2586754 -115275873 - MIR SINE MIR -75 187 102 189 74 0 0 chr9 2586785 2586812 -115275815 + (TTA)n Simple_repeat Simple_repeat 2 28 0 202 286 179 9 chr9 2586860 2586972 -115275655 + L2 LINE L2 3151 3281 -32 404 211 0 0 chr9 2586989 2587065 -115275562 + L1MD1 LINE L1 6156 6231 -11 262 177 39 21 chr9 2587255 2587328 -115275299 + MIR SINE MIR 91 169 -39 335 164 0 14 chr9 2587611 2587684 -115274943 + MER3 DNA MER1_type 96 167 -42 31 0 0 0 chr9 2587692 2587723 -115274904 + AT_rich Low_complexity Low_complexity 1 31 0 1549 188 7 24 chr9 2587723 2588015 -115274612 - AluJb SINE Alu -25 287 1 417 104 60 0 chr9 2588015 2588082 -115274545 + MER3 DNA MER1_type 139 209 0 191 319 149 11 chr9 2588962 2589056 -115273571 - MIR3 SINE MIR -47 161 55 395 269 41 58 chr9 2589362 2589533 -115273094 - MIR3 SINE MIR -25 183 16 24 0 0 0 chr9 2590653 2590677 -115271950 + AT_rich Low_complexity Low_complexity 1 24 0 628 284 38 38 chr9 2591082 2591346 -115271281 - MLT1J LTR MaLR -8 503 240 864 233 10 26 chr9 2591347 2591540 -115271087 + AluJo SINE Alu 122 311 -1 310 258 47 74 chr9 2592025 2592215 -115270412 - L1ME4a LINE L1 -2 6119 5935 3042 60 19 0 chr9 2592256 2592624 -115270003 - L1PA8 LINE L1 -7 6165 5791 564 283 30 18 chr9 2592995 2593161 -115269466 + MIR3 SINE MIR 34 201 -7 229 189 75 0 chr9 2593237 2593290 -115269337 + L2 LINE L2 3257 3313 0 322 292 62 59 chr9 2593398 2593546 -115269081 - L1M4 LINE L1 -1630 4516 4370 2028 138 0 10 chr9 2593546 2593844 -115268783 - AluSx SINE Alu -17 295 1 322 292 62 59 chr9 2593844 2594099 -115268528 - L1M4 LINE L1 -1776 4370 4112 869 265 73 83 chr9 2594104 2594631 -115267996 - L1M4 LINE L1 -996 5150 4632 1381 170 134 0 chr9 2594631 2594884 -115267743 - AluSx SINE Alu -25 287 1 869 265 73 83 chr9 2594884 2595138 -115267489 - L1M4 LINE L1 -1514 4632 4377 294 214 0 0 chr9 2595140 2595196 -115267431 + MLT1F1 LTR MaLR 3 58 -509 867 248 63 38 chr9 2595237 2595475 -115267152 + MLT1F1 LTR MaLR 50 293 -274 366 315 81 35 chr9 2595553 2595959 -115266668 - L1M4 LINE L1 -1757 4389 3965 411 21 0 0 chr9 2595973 2596021 -115266606 + (CA)n Simple_repeat Simple_repeat 2 49 0 308 313 15 37 chr9 2596029 2596192 -115266435 - L1ME4a LINE L1 -487 5634 5495 974 243 21 0 chr9 2596228 2596463 -115266164 - MIR SINE MIR 0 262 23 1438 195 47 0 chr9 2596465 2596742 -115265885 - AluJo SINE Alu -14 298 9 191 269 247 0 chr9 2596807 2596900 -115265727 - MIR SINE MIR -4 258 143 994 167 6 36 chr9 2597118 2597286 -115265341 - FRAM SINE Alu -3 163 1 500 307 98 19 chr9 2597348 2597563 -115265064 + MIR SINE MIR 20 251 -11 765 268 9 28 chr9 2597738 2597951 -115264676 - MIR SINE MIR -25 237 29 640 280 69 0 chr9 2598199 2598417 -115264210 + MIR SINE MIR 29 261 -1 258 244 144 11 chr9 2598983 2599073 -115263554 - MER5B DNA MER1_type -51 127 26 1047 171 15 20 chr9 2599753 2599952 -115262675 - AluJo SINE Alu -21 291 94 313 221 158 11 chr9 2599991 2600086 -115262541 + MIR3 SINE MIR 47 155 -53 255 297 30 20 chr9 2600890 2600991 -115261636 - MIR SINE MIR -50 212 111 34 0 0 0 chr9 2601180 2601214 -115261413 + AT_rich Low_complexity Low_complexity 1 34 0 1705 181 7 19 chr9 2601247 2601557 -115261070 - AluJo SINE Alu -6 306 1 200 244 22 0 chr9 2601565 2601610 -115261017 - MER5A DNA MER1_type -79 110 65 611 111 202 0 chr9 2602155 2602254 -115260373 + AluJb SINE Alu 182 300 -12 243 225 56 28 chr9 2602260 2602331 -115260296 + MER5A DNA MER1_type 117 189 0 1384 160 36 4 chr9 2603525 2603750 -115258877 - MER46A DNA MER2_type 0 236 5 321 276 43 9 chr9 2603956 2604072 -115258555 - MIR SINE MIR -48 214 95 800 219 48 28 chr9 2604095 2604169 -115258458 - L1MB4 LINE L1 -23 6157 6086 1487 122 5 0 chr9 2604169 2604374 -115258253 + AluSx SINE Alu 1 206 -106 800 219 48 28 chr9 2604374 2604586 -115258041 - L1MB4 LINE L1 -94 6086 5950 2701 23 0 0 chr9 2604896 2605195 -115257432 + AluY SINE Alu 3 301 -10 1858 130 38 17 chr9 2605293 2605585 -115257042 - AluJb SINE Alu -14 298 1 327 49 0 0 chr9 2605617 2605658 -115256969 + (CA)n Simple_repeat Simple_repeat 2 42 0 308 267 10 20 chr9 2606139 2606240 -115256387 + MIR SINE MIR 150 249 -13 370 237 51 70 chr9 2606331 2606361 -115256266 - MIR SINE MIR -102 160 131 333 0 0 0 chr9 2606361 2606398 -115256229 + (TG)n Simple_repeat Simple_repeat 2 38 0 370 237 51 70 chr9 2606398 2606523 -115256104 - MIR SINE MIR -131 131 8 2143 132 0 0 chr9 2607076 2607371 -115255256 + AluSx SINE Alu 1 295 -17 2381 164 10 10 chr9 2608984 2609373 -115253254 + MLT1B LTR MaLR 1 389 -1 2219 125 3 0 chr9 2610440 2610744 -115251883 + AluSp SINE Alu 1 305 -8 1753 246 87 24 chr9 2610769 2611310 -115251317 - MER90 LTR ERV1 0 575 1 213 167 42 0 chr9 2612327 2612375 -115250252 + CT-rich Low_complexity Low_complexity 3 52 0 180 77 0 0 chr9 2612620 2612646 -115249981 + (T)n Simple_repeat Simple_repeat 1 26 0 2086 121 20 0 chr9 2613647 2613945 -115248682 + AluSx SINE Alu 1 304 -8 327 203 0 0 chr9 2613945 2614014 -115248613 + (TA)n Simple_repeat Simple_repeat 1 69 0 276 30 0 0 chr9 2614014 2614047 -115248580 + (CA)n Simple_repeat Simple_repeat 2 34 0 492 260 0 0 chr9 2614155 2614255 -115248372 - MER58B DNA MER1_type 0 341 242 472 153 0 14 chr9 2614301 2614373 -115248254 + AluSg/x SINE Alu 86 156 -154 532 160 180 82 chr9 2614384 2614578 -115248049 - MER58B DNA MER1_type -128 213 1 315 313 53 33 chr9 2614611 2614761 -115247866 - L1MC4a LINE L1 -1845 5963 5811 915 197 0 38 chr9 2614833 2615016 -115247611 - AluJb SINE Alu -3 309 134 1969 130 3 10 chr9 2615016 2615317 -115247310 - AluSx SINE Alu -13 299 1 274 351 0 0 chr9 2615319 2615433 -115247194 - L1MC4a LINE L1 -379 5742 5629 336 278 41 0 chr9 2616089 2616186 -115246441 + MIR3 SINE MIR 96 196 -12 238 292 29 109 chr9 2616210 2616297 -115246330 + L2 LINE L2 3146 3220 -52 1638 169 14 27 chr9 2616297 2616592 -115246035 + AluJo SINE Alu 1 291 -21 238 292 29 109 chr9 2616592 2616641 -115245986 + L2 LINE L2 3220 3271 -1 722 285 94 84 chr9 2616690 2617273 -115245354 + MLT1L LTR MaLR 19 607 -8 2388 83 0 0 chr9 2618242 2618544 -115244083 + AluY SINE Alu 1 302 -9 302 291 127 63 chr9 2619011 2619169 -115243458 + MIR SINE MIR 20 187 -75 563 323 96 27 chr9 2619194 2619274 -115243353 - L2 LINE L2 0 3272 3199 1973 159 0 3 chr9 2619274 2619576 -115243051 + AluSx SINE Alu 1 301 -11 563 323 96 27 chr9 2619576 2619901 -115242726 - L2 LINE L2 -73 3199 2839 2446 89 0 0 chr9 2619923 2620225 -115242402 + AluSc SINE Alu 1 302 -7 183 330 8 93 chr9 2620237 2620355 -115242272 - MIR SINE MIR -126 136 29 298 263 61 35 chr9 2622382 2622496 -115240131 + L2 LINE L2 3197 3313 0 2697 145 20 57 chr9 2622713 2623258 -115239369 + L1MB4 LINE L1 5655 6179 -1 506 338 32 18 chr9 2623350 2623569 -115239058 + MIR SINE MIR 29 250 -12 2815 110 0 3 chr9 2623685 2624050 -115238577 - THE1B LTR MaLR 0 364 1 503 231 59 117 chr9 2624391 2624863 -115237764 - HAL1 LINE L1 -32 2475 2031 2313 250 80 57 chr9 2624868 2625982 -115236645 - HAL1 LINE L1 -838 1669 530 313 298 43 27 chr9 2626132 2626320 -115236307 + L1ME4a LINE L1 5725 5915 -206 2267 108 3 0 chr9 2626766 2627063 -115235564 - AluY SINE Alu -13 298 1 509 317 54 32 chr9 2627071 2627443 -115235184 - L1M4 LINE L1 -2055 4091 3712 3797 152 17 2 chr9 2627545 2628124 -115234503 - L1PA15 LINE L1 0 6165 5578 977 233 49 0 chr9 2628152 2628397 -115234230 + L1M4 LINE L1 2476 2732 -3414 3224 245 33 16 chr9 2628400 2629319 -115233308 - L1M4 LINE L1 -1694 4452 3519 2211 107 3 7 chr9 2629834 2630134 -115232493 + AluSg SINE Alu 1 299 -11 437 341 29 39 chr9 2630815 2631020 -115231607 - MIR SINE MIR -58 204 2 2312 109 69 29 chr9 2631991 2632341 -115230286 - THE1B LTR MaLR 0 364 1 11275 102 2 81 chr9 2632341 2634055 -115228572 - THE1B-int LTR MaLR 0 1580 1 2380 125 43 14 chr9 2634057 2634409 -115228218 - THE1B LTR MaLR -2 362 1 375 247 58 39 chr9 2634998 2635152 -115227475 - L2 LINE L2 -202 3070 2914 221 114 45 0 chr9 2636623 2636667 -115225960 + T-rich Low_complexity Low_complexity 2 47 0 207 265 20 0 chr9 2636836 2636885 -115225742 + L3 LINE CR1 1526 1575 -2 905 289 141 18 chr9 2637497 2638167 -115224460 + L2 LINE L2 2563 3308 -5 180 0 0 0 chr9 2639070 2639090 -115223537 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 187 297 164 16 chr9 2639127 2639255 -115223372 - MIR SINE MIR -50 212 66 236 273 141 41 chr9 2640838 2640959 -115221668 + MIR SINE MIR 112 244 -18 289 289 193 15 chr9 2641324 2641459 -115221168 - MIR SINE MIR -22 240 82 252 0 0 0 chr9 2643074 2643102 -115219525 + (T)n Simple_repeat Simple_repeat 1 28 0 1027 84 30 0 chr9 2643602 2643733 -115218894 - AluJb SINE Alu -177 135 1 869 192 34 0 chr9 2644899 2645076 -115217551 - MER5A DNA MER1_type 0 189 7 1636 166 42 93 chr9 2650202 2650367 -115212260 + MLT1B LTR MaLR 1 173 -217 2155 117 0 0 chr9 2650367 2650658 -115211969 + AluSx SINE Alu 15 305 -7 1636 166 42 93 chr9 2650658 2650901 -115211726 + MLT1B LTR MaLR 173 388 -2 2498 65 6 37 chr9 2655576 2655899 -115206728 + AluSq SINE Alu 1 313 0 1654 188 36 36 chr9 2660591 2660952 -115201675 + MLT1A1 LTR MaLR 1 361 -4 522 221 44 0 chr9 2661301 2661414 -115201213 + MER94 DNA DNA 1 118 -16 189 0 0 0 chr9 2662055 2662076 -115200551 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 2484 71 0 7 chr9 2662076 2662385 -115200242 - AluY SINE Alu -4 307 1 751 304 24 0 chr9 2664761 2664968 -115197659 + MLT1J LTR MaLR 70 281 -230 333 0 0 0 chr9 2666956 2666993 -115195634 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 0 0 0 chr9 2666992 2667013 -115195614 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 4557 157 29 8 chr9 2668183 2669296 -115193331 - L1MA4A LINE L1 -6 6150 5062 2135 133 10 0 chr9 2669951 2670260 -115192367 + AluSq SINE Alu 1 312 -1 468 272 108 15 chr9 2670423 2670618 -115192009 - MIR SINE MIR -35 227 15 725 181 29 103 chr9 2670824 2671028 -115191599 - MER5A DNA MER1_type 0 189 1 2327 87 0 7 chr9 2672162 2672462 -115190165 - AluSg SINE Alu -12 298 1 244 294 151 8 chr9 2672921 2673047 -115189580 + L2 LINE L2 3122 3265 -7 2106 137 61 9 chr9 2673595 2673938 -115188689 + MER46B DNA MER2_type 1 236 0 181 355 16 0 chr9 2675015 2675077 -115187550 - L3 LINE CR1 -1460 117 55 225 0 0 0 chr9 2677867 2677892 -115184735 + (CCG)n Simple_repeat Simple_repeat 1 25 0 307 286 24 0 chr9 2677929 2678013 -115184614 + G-rich Low_complexity Low_complexity 2 87 0 205 122 0 41 chr9 2678125 2678174 -115184453 + (GGGGA)n Simple_repeat Simple_repeat 5 51 0 23 33 0 0 chr9 2678293 2678323 -115184304 + GC_rich Low_complexity Low_complexity 1 30 0 227 366 24 0 chr9 2680288 2680370 -115182257 + MIR SINE MIR 65 148 -60 186 338 13 0 chr9 2680681 2680758 -115181869 - L2 LINE L2 0 3272 3195 715 265 45 9 chr9 2680972 2681195 -115181432 + MLT1I LTR MaLR 39 269 -140 781 255 82 0 chr9 2681269 2681453 -115181174 + MER58C DNA MER1_type 2 200 -15 347 193 121 12 chr9 2681494 2681577 -115181050 + MLT1I LTR MaLR 318 409 0 1625 161 23 33 chr9 2681961 2682266 -115180361 + AluJb SINE Alu 1 302 -10 313 328 5 7 chr9 2682404 2682538 -115180089 - MER5A DNA MER1_type -43 146 1 1059 159 74 0 chr9 2682964 2683140 -115179487 - MER5A DNA MER1_type 0 189 1 444 332 89 43 chr9 2683192 2683584 -115179043 + MLT1K LTR MaLR 162 571 -17 852 232 32 41 chr9 2683953 2684173 -115178454 + MER20B DNA MER1_type 2 219 0 777 249 92 9 chr9 2685391 2685608 -115177019 + MIR SINE MIR 2 236 -26 518 247 45 32 chr9 2685676 2685830 -115176797 + MER5B DNA MER1_type 3 158 -20 2422 97 3 0 chr9 2686689 2686999 -115175628 + AluSx SINE Alu 1 311 -1 5020 139 19 1 chr9 2687885 2688683 -115173944 + L1MA4A LINE L1 5486 6297 -6 1422 161 24 69 chr9 2689939 2690274 -115172353 - L1MA7 LINE L1 -2 6289 5970 2231 93 0 42 chr9 2690279 2690591 -115172036 - AluSx SINE Alu -13 299 1 331 303 8 8 chr9 2692514 2692633 -115169994 + MIR SINE MIR 32 150 -112 1526 233 81 40 chr9 2693216 2693748 -115168879 - MER20B DNA MER1_type -1 782 229 1291 172 19 34 chr9 2693802 2694070 -115168557 - AluJo SINE Alu -7 305 42 417 225 78 56 chr9 2694074 2694216 -115168411 - MER20B DNA MER1_type -608 175 31 406 294 73 14 chr9 2694607 2694737 -115167890 + MIR SINE MIR 18 168 -94 1466 213 96 0 chr9 2694737 2695070 -115167557 - MLT1A1 LTR MaLR 0 365 1 406 294 73 14 chr9 2695070 2695157 -115167470 + MIR SINE MIR 168 248 -14 4764 106 1 7 chr9 2695219 2695891 -115166736 - L1PA13 LINE L1 -13 6150 5483 4719 107 1 0 chr9 2695230 2695906 -115166721 - L1PA13 LINE L1 -19 6144 5468 354 295 18 18 chr9 2697388 2697500 -115165127 - L1ME4a LINE L1 -48 6073 5962 789 193 0 0 chr9 2697541 2697681 -115164946 + FRAM SINE Alu 1 140 -36 2187 106 0 3 chr9 2698314 2698606 -115164021 - AluSx SINE Alu -21 291 1 190 154 51 0 chr9 2698775 2698814 -115163813 + L2 LINE L2 184 224 -3090 300 234 0 64 chr9 2700013 2700107 -115162520 + CT-rich Low_complexity Low_complexity 1 88 0 306 125 0 0 chr9 2701244 2701292 -115161335 + (TCC)n Simple_repeat Simple_repeat 1 48 0 1951 173 3 0 chr9 2701292 2701598 -115161029 - AluJb SINE Alu -5 307 1 322 274 121 40 chr9 2702273 2702435 -115160192 + MIR SINE MIR 16 179 -56 223 312 184 32 chr9 2702544 2702762 -115159865 + MIR SINE MIR 11 261 -1 28 0 0 0 chr9 2704293 2704321 -115158306 + AT_rich Low_complexity Low_complexity 1 28 0 457 235 176 15 chr9 2704539 2704743 -115157884 - L1ME4a LINE L1 -4 6117 5881 338 332 161 10 chr9 2704889 2705058 -115157569 - L1ME4a LINE L1 -452 5669 5466 437 253 11 79 chr9 2705058 2705248 -115157379 + MER5B DNA MER1_type 1 177 -1 338 332 161 10 chr9 2705248 2705271 -115157356 - L1ME4a LINE L1 -655 5466 5448 352 311 78 38 chr9 2706092 2706462 -115156165 + MLT1J LTR MaLR 108 492 -19 1873 169 28 104 chr9 2706706 2707169 -115155458 + MSTB1 LTR MaLR 1 428 -4 8865 173 40 7 chr9 2707173 2708771 -115153856 + MSTB-int LTR MaLR 1 1651 0 2104 188 39 12 chr9 2708771 2709186 -115153441 + MSTB LTR MaLR 1 426 0 2078 151 5 16 chr9 2710374 2710746 -115151881 - L1PB1 LINE L1 -2 6149 5782 424 174 23 0 chr9 2710746 2710832 -115151795 + L1PB1 LINE L1 5777 5864 -287 278 137 0 0 chr9 2710847 2710898 -115151729 - L1PB1 LINE L1 -597 5554 5504 300 289 0 22 chr9 2710922 2711012 -115151615 + L1MC4 LINE L1 6616 6703 -1339 13905 195 27 7 chr9 2711017 2713642 -115148985 - L1P5 LINE L1 -360 6507 3936 207 0 0 0 chr9 2713642 2713665 -115148962 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13905 195 27 7 chr9 2713665 2716633 -115145994 - L1P5 LINE L1 -2931 3936 653 402 21 0 0 chr9 2717204 2717251 -115145376 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 295 250 156 19 chr9 2718493 2718653 -115143974 - L1ME3A LINE L1 0 6170 5989 2869 80 22 59 chr9 2718757 2719218 -115143409 - MLT2A1 LTR ERVL 0 444 1 290 271 35 80 chr9 2719225 2719686 -115142941 - L1MEc LINE L1 -4917 1393 954 2411 69 0 0 chr9 2719714 2720020 -115142607 - AluY SINE Alu -5 306 1 292 184 51 20 chr9 2720301 2720399 -115142228 - L1MC5 LINE L1 -30 7931 7831 389 351 121 4 chr9 2720411 2720659 -115141968 - L1MEc LINE L1 -5292 827 551 762 282 194 5 chr9 2721240 2721652 -115140975 + LTR33A LTR ERVL 5 494 -29 429 301 21 43 chr9 2722717 2722903 -115139724 + MIR SINE MIR 11 192 -70 1456 204 29 50 chr9 2724282 2724664 -115137963 - MLT1A2 LTR MaLR 0 374 1 635 178 0 75 chr9 2724746 2724892 -115137735 - AluJo/FRAM SINE Alu -3 309 175 317 183 56 14 chr9 2724892 2724963 -115137664 - Alu SINE Alu -251 52 2 507 279 161 43 chr9 2725419 2725766 -115136861 + L2 LINE L2 2924 3311 -2 224 266 164 31 chr9 2725778 2725906 -115136721 - MIR SINE MIR -66 196 52 2242 120 0 7 chr9 2726172 2726471 -115136156 - AluSx SINE Alu -15 297 1 2094 131 108 10 chr9 2727454 2727842 -115134785 + MSTB LTR MaLR 1 426 0 1879 199 14 0 chr9 2728103 2728474 -115134153 + MLT1B LTR MaLR 15 390 0 264 276 0 0 chr9 2728673 2728731 -115133896 - L2 LINE L2 -2 3270 3213 381 22 0 0 chr9 2729499 2729545 -115133082 - MLT2C1 LTR ERVL 0 520 475 1125 128 0 0 chr9 2729546 2729726 -115132901 + (TA)n Simple_repeat Simple_repeat 1 180 0 374 258 0 43 chr9 2729736 2729922 -115132705 + (CATATA)n Simple_repeat Simple_repeat 3 180 0 405 0 0 0 chr9 2729923 2729968 -115132659 + (TG)n Simple_repeat Simple_repeat 1 45 0 1665 193 15 9 chr9 2730006 2730343 -115132284 - MLT2C1 LTR ERVL -58 339 1 405 309 11 56 chr9 2730435 2730613 -115132014 - L3 LINE CR1 -112 1465 1296 229 135 0 0 chr9 2730713 2730750 -115131877 - MER103 DNA DNA -1 165 129 939 249 111 47 chr9 2730938 2731343 -115131284 - MLT1H LTR MaLR 0 549 119 242 313 117 31 chr9 2731453 2731616 -115131011 - MER5B DNA MER1_type -1 177 1 1677 165 47 52 chr9 2732329 2732711 -115129916 - MLT1B LTR MaLR -10 380 1 854 236 64 40 chr9 2733244 2733276 -115129351 + MIR SINE MIR 7 37 -225 1107 202 52 0 chr9 2733276 2733489 -115129138 + MER58A DNA MER1_type 1 224 0 854 236 64 40 chr9 2733489 2733706 -115128921 + MIR SINE MIR 37 262 0 1764 167 20 0 chr9 2734600 2734893 -115127734 + AluJo SINE Alu 1 299 -13 3038 81 26 2 chr9 2735074 2735495 -115127132 + MLT2A2 LTR ERVL 23 453 0 5250 141 47 1 chr9 2735539 2736504 -115126123 - L1MC1 LINE L1 -1 6612 5604 2240 105 10 0 chr9 2736504 2736800 -115125827 - AluSp SINE Alu -14 299 1 4288 111 28 7 chr9 2736818 2737505 -115125122 - L1MA3 LINE L1 0 6305 5605 210 71 0 0 chr9 2737505 2737533 -115125094 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 998 148 0 0 chr9 2737534 2737696 -115124931 - L1PA15 LINE L1 -31 6134 5973 19445 134 29 10 chr9 2737705 2740933 -115121694 - L1M1 LINE L1 -4262 3303 14 1309 229 61 11 chr9 2740938 2741298 -115121329 - L1MC1 LINE L1 -823 5603 5216 201 39 0 0 chr9 2741298 2741324 -115121303 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 1309 229 61 11 chr9 2741324 2741403 -115121224 - L1MC1 LINE L1 -1210 5216 5142 * 1603 267 6 0 chr9 2741402 2741892 -115120735 - L1MC1 LINE L1 -3420 3006 2514 2521 179 53 2 chr9 2741892 2742477 -115120150 + L1PBa LINE L1 1758 2372 -4491 5964 92 14 22 chr9 2742477 2743398 -115119229 - L1PA12 LINE L1 -4 6164 5236 4272 76 43 3 chr9 2743398 2743980 -115118647 + LTR14B LTR ERVK 4 608 0 5964 92 14 22 chr9 2743980 2744589 -115118038 - L1PA12 LINE L1 -932 5236 4638 2200 132 0 0 chr9 2744589 2744885 -115117742 + AluSx SINE Alu 1 296 -16 5964 92 14 22 chr9 2744885 2745137 -115117490 - L1PA12 LINE L1 -1530 4638 4385 559 239 22 0 chr9 2745138 2745272 -115117355 - L1MC1 LINE L1 -6284 142 6 447 246 44 11 chr9 2745699 2745882 -115116745 - L1ME4a LINE L1 -2 6119 5931 378 323 62 0 chr9 2745906 2746067 -115116560 - MIR SINE MIR -2 260 90 21 71 0 0 chr9 2746128 2746170 -115116457 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 2746247 2746268 -115116359 + AT_rich Low_complexity Low_complexity 1 21 0 2447 63 0 3 chr9 2746914 2747215 -115115412 - AluY SINE Alu -11 300 1 338 216 129 52 chr9 2747482 2747598 -115115029 - MIR3 SINE MIR -6 202 78 1565 268 26 35 chr9 2747830 2748400 -115114227 - L1MD3 LINE L1 -18 7977 7413 476 202 0 23 chr9 2748402 2748531 -115114096 + L1MD3 LINE L1 6938 7063 -932 3145 207 32 2 chr9 2748538 2749165 -115113462 + MER82 DNA MER2_type 8 653 0 725 214 61 31 chr9 2749170 2749399 -115113228 + L1MC4a LINE L1 7015 7250 -558 24 0 0 0 chr9 2749532 2749556 -115113071 + AT_rich Low_complexity Low_complexity 1 24 0 333 282 137 8 chr9 2749765 2749896 -115112731 + L2 LINE L2 3122 3269 -3 813 262 187 18 chr9 2750323 2750708 -115111919 - MLT1J2 LTR MaLR 0 450 1 226 301 70 24 chr9 2751401 2751614 -115111013 - L1ME4a LINE L1 -4 6117 5895 599 208 214 0 chr9 2751834 2752002 -115110625 + MIR SINE MIR 58 261 -1 952 173 9 61 chr9 2752056 2752287 -115110340 + MER20 DNA MER1_type 1 219 0 706 216 29 39 chr9 2752515 2752723 -115109904 - MER106A DNA MER1_type -2 234 29 205 347 95 11 chr9 2753684 2753779 -115108848 + L2 LINE L2 3161 3263 -9 1554 201 7 26 chr9 2754967 2755270 -115107357 - AluJb SINE Alu -15 297 1 464 295 70 8 chr9 2755490 2755619 -115107008 + L2 LINE L2 3136 3272 0 5846 83 30 52 chr9 2756214 2757827 -115104800 + L1PA10 LINE L1 4558 6152 -16 2242 117 0 13 chr9 2758494 2758811 -115103816 + AluSq SINE Alu 1 313 0 22 0 0 0 chr9 2759571 2759593 -115103034 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr9 2760439 2760460 -115102167 + (T)n Simple_repeat Simple_repeat 1 21 0 29 0 0 0 chr9 2761076 2761105 -115101522 + AT_rich Low_complexity Low_complexity 1 29 0 215 274 0 0 chr9 2761382 2761433 -115101194 + G-rich Low_complexity Low_complexity 6 56 0 340 263 53 45 chr9 2762329 2762462 -115100165 - MIR SINE MIR -18 244 111 580 261 141 5 chr9 2763299 2763498 -115099129 + MIR SINE MIR 29 254 -8 823 243 79 69 chr9 2765007 2765414 -115097213 + HsTC2a DNA Tc2 94 504 -240 455 156 22 11 chr9 2765415 2765505 -115097122 + HsTC2a DNA Tc2 651 741 -1 250 292 83 0 chr9 2766121 2766241 -115096386 - L3b LINE CR1 -351 1232 1103 258 225 56 11 chr9 2766253 2766342 -115096285 - MER94 DNA DNA -9 125 33 863 274 155 44 chr9 2766380 2766792 -115095835 - L3 LINE CR1 -492 1085 615 2203 92 0 3 chr9 2766792 2767114 -115095513 + AluSg SINE Alu 1 321 0 863 274 155 44 chr9 2767114 2767157 -115095470 - L3 LINE CR1 -962 615 578 1144 199 85 99 chr9 2767159 2767652 -115094975 - LTR29 LTR ERV1 0 622 137 276 283 23 48 chr9 2767627 2767774 -115094853 - MER34 LTR ERV1 -409 133 1 * 182 329 25 63 chr9 2767795 2767953 -115094674 - L3 LINE CR1 -1055 522 371 180 143 0 122 chr9 2768034 2768083 -115094544 + L2 LINE L2 3261 3303 -10 2182 111 20 3 chr9 2769251 2769549 -115093078 + AluSx SINE Alu 1 303 -9 603 293 102 5 chr9 2769554 2769759 -115092868 + MIR SINE MIR 28 252 -10 547 281 207 5 chr9 2769956 2770159 -115092468 + MIR SINE MIR 2 245 -17 396 312 28 7 chr9 2770422 2770563 -115092064 - MER117 DNA MER1_type -53 144 1 2234 116 0 13 chr9 2770659 2770970 -115091657 - AluSx SINE Alu -5 307 1 1958 130 14 0 chr9 2771360 2771645 -115090982 - AluSq SINE Alu -7 306 18 574 298 36 16 chr9 2771796 2772105 -115090522 + L1ME LINE L1 5316 5558 -604 2636 82 3 72 chr9 2772136 2772527 -115090100 - THE1B LTR MaLR 0 364 1 482 220 20 0 chr9 2772566 2772666 -115089961 - MER94 DNA DNA 0 134 33 25 0 0 0 chr9 2773078 2773103 -115089524 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr9 2773155 2773179 -115089448 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr9 2774037 2774072 -115088555 + (TG)n Simple_repeat Simple_repeat 1 35 0 264 59 0 0 chr9 2774072 2774106 -115088521 + (GA)n Simple_repeat Simple_repeat 2 35 0 825 180 33 27 chr9 2774276 2774450 -115088177 + MLT1H LTR MaLR 1 175 -374 3185 138 66 22 chr9 2774450 2775039 -115087588 - MER41B LTR ERV1 0 635 21 228 91 0 0 chr9 2775036 2775069 -115087558 - MER41A LTR ERV1 -496 58 26 * 483 231 104 136 chr9 2775080 2775426 -115087201 + MLT1H LTR MaLR 176 510 -39 755 133 103 42 chr9 2776523 2776688 -115085939 + L1PA16 LINE L1 5992 6166 0 21 57 0 0 chr9 2776797 2776832 -115085795 + AT_rich Low_complexity Low_complexity 1 35 0 228 299 219 12 chr9 2776963 2777127 -115085500 + MIR SINE MIR 59 256 -6 346 217 29 0 chr9 2778003 2778072 -115084555 - MER5B DNA MER1_type 0 178 108 11507 118 32 81 chr9 2778076 2784404 -115078223 + L1PA8 LINE L1 12 6172 0 338 191 0 0 chr9 2784424 2784492 -115078135 + L1M4 LINE L1 4684 4751 -1395 372 22 0 0 chr9 2784494 2784539 -115078088 - LTR7 LTR ERV1 -405 45 1 3263 107 6 28 chr9 2784539 2785072 -115077555 - HERVH LTR ERV1 0 7713 7193 2840 234 4 4 chr9 2785061 2785762 -115076865 - HERVH LTR ERV1 -2699 5014 4314 * 15751 185 16 28 chr9 2785826 2789918 -115072709 - HERVH LTR ERV1 -3430 5148 1 1896 162 60 21 chr9 2789918 2790351 -115072276 - LTR7 LTR ERV1 0 450 1 9006 147 57 82 chr9 2790405 2791909 -115070718 + L1MC3 LINE L1 5653 7194 -591 244 294 11 22 chr9 2791909 2792001 -115070626 + MLT1F1 LTR MaLR 35 125 -442 9006 147 57 82 chr9 2792001 2792573 -115070054 + L1MC3 LINE L1 7194 7766 -19 2658 20 0 0 chr9 2792573 2792873 -115069754 - AluY SINE Alu -11 300 1 9006 147 57 82 chr9 2792873 2792893 -115069734 + L1MC3 LINE L1 7766 7785 0 506 233 15 3 chr9 2792897 2793016 -115069611 - MER5B DNA MER1_type -57 126 12 266 240 10 80 chr9 2793945 2794045 -115068582 - L2 LINE L2 0 3313 3221 1096 202 5 14 chr9 2794124 2794342 -115068285 + MER20 DNA MER1_type 1 216 -3 982 181 62 0 chr9 2794844 2795037 -115067590 - MER3 DNA MER1_type -4 205 1 2128 249 34 39 chr9 2797026 2797752 -115064875 + MER21B LTR ERV1 13 735 -128 2391 94 71 0 chr9 2797762 2798112 -115064515 + MER51B LTR ERV1 3 377 0 233 236 55 18 chr9 2798149 2798204 -115064423 - L2 LINE L2 -60 3212 3156 457 287 123 20 chr9 2798241 2798436 -115064191 + LTR33 LTR ERVL 1 215 -306 277 188 77 60 chr9 2798583 2798700 -115063927 + LTR33 LTR ERVL 403 521 0 407 319 60 44 chr9 2799636 2799735 -115062892 - MIR3 SINE MIR -21 187 82 2095 140 10 75 chr9 2799735 2800150 -115062477 - MLT1B LTR MaLR 0 390 3 407 319 60 44 chr9 2800150 2800232 -115062395 - MIR3 SINE MIR -126 82 3 202 306 32 0 chr9 2801019 2801081 -115061546 - MIR SINE MIR -63 145 82 481 291 14 0 chr9 2801370 2801518 -115061109 - MER103 DNA DNA -7 159 10 898 270 70 59 chr9 2802545 2803090 -115059537 + MLT1L LTR MaLR 21 467 -44 645 322 153 8 chr9 2803375 2803729 -115058898 - L2 LINE L2 -8 3305 2901 254 297 168 0 chr9 2804634 2804735 -115057892 - MIR3 SINE MIR -4 204 87 376 243 168 34 chr9 2804861 2805036 -115057591 - MIR SINE MIR -30 232 31 490 314 168 9 chr9 2805345 2805565 -115057062 + MIR SINE MIR 2 256 -6 2265 97 3 3 chr9 2805717 2806015 -115056612 - AluSp SINE Alu -15 298 1 424 278 133 17 chr9 2807271 2807512 -115055115 - L1ME3A LINE L1 -215 5947 5679 2132 124 0 0 chr9 2807685 2808015 -115054612 - AluSx SINE Alu 0 330 1 1613 170 0 56 chr9 2808021 2808327 -115054300 - AluJb SINE Alu -17 295 7 326 196 131 9 chr9 2808508 2808615 -115054012 - L1MEd LINE L1 -5998 121 2 216 323 46 39 chr9 2809707 2809837 -115052790 + L2 LINE L2 2716 2846 -468 243 0 0 0 chr9 2809894 2809921 -115052706 + (A)n Simple_repeat Simple_repeat 1 27 0 373 256 183 0 chr9 2810463 2810600 -115052027 + MIR SINE MIR 57 218 -44 217 328 101 25 chr9 2810728 2810847 -115051780 - L2 LINE L2 -9 3263 3136 752 219 17 52 chr9 2810874 2811107 -115051520 + MER33 DNA MER1_type 1 225 -99 1043 61 0 0 chr9 2811107 2811238 -115051389 + AluY SINE Alu 181 311 0 252 0 0 0 chr9 2811242 2811270 -115051357 + (TA)n Simple_repeat Simple_repeat 2 29 0 361 124 45 34 chr9 2811277 2811366 -115051261 + MER33 DNA MER1_type 259 348 -15 1849 130 22 7 chr9 2811371 2811648 -115050979 - AluSq SINE Alu -19 294 14 269 300 148 51 chr9 2811712 2811969 -115050658 - L2 LINE L2 -167 3105 2824 228 158 329 13 chr9 2812642 2812718 -115049909 + MER5A DNA MER1_type 59 158 -31 * 446 212 30 10 chr9 2812652 2812751 -115049876 - MER5A DNA MER1_type -80 109 9 * 700 333 144 19 chr9 2812744 2813384 -115049243 - L3 LINE CR1 -16 1561 842 552 287 83 47 chr9 2813565 2814035 -115048592 - L1ME4a LINE L1 -282 5839 5353 2504 100 3 11 chr9 2814231 2814612 -115048015 - L1MA2 LINE L1 0 6304 5927 268 91 121 76 chr9 2814706 2814772 -115047855 + MADE1 DNA Mariner 12 80 0 405 279 22 8 chr9 2814837 2814851 -115047776 - L1ME4a LINE L1 -1968 4178 4166 2276 95 0 10 chr9 2814851 2815156 -115047471 - AluY SINE Alu -9 302 1 405 279 22 8 chr9 2815156 2815296 -115047331 - L1ME4a LINE L1 -1980 4166 4023 744 248 8 33 chr9 2815549 2815791 -115046836 + L1MB7 LINE L1 5948 6183 -1 1257 254 45 2 chr9 2815793 2816191 -115046436 - L1MC4 LINE L1 -384 7658 7244 1815 268 14 24 chr9 2816192 2816818 -115045809 - L1MC4 LINE L1 -961 7081 6462 21 36 0 0 chr9 2818031 2818059 -115044568 + AT_rich Low_complexity Low_complexity 1 28 0 350 316 0 10 chr9 2818554 2818652 -115043975 - L2 LINE L2 0 3313 3217 687 247 86 0 chr9 2818653 2818839 -115043788 + MER63A DNA MER1_type 9 210 0 1158 326 59 52 chr9 2818839 2819806 -115042821 - L2 LINE L2 -93 3179 2204 254 294 0 0 chr9 2820011 2820079 -115042548 + MIR SINE MIR 183 250 -12 338 157 12 0 chr9 2820081 2820164 -115042463 + CT-rich Low_complexity Low_complexity 2 85 0 222 125 25 0 chr9 2820277 2820317 -115042310 + (TG)n Simple_repeat Simple_repeat 1 41 0 1465 247 99 53 chr9 2820724 2821063 -115041564 - MLT1G1 LTR MaLR -15 580 258 1847 146 27 7 chr9 2821063 2821364 -115041263 - AluSx SINE Alu -5 307 1 640 246 0 0 chr9 2821370 2821492 -115041135 - FLAM_A SINE Alu -10 123 2 1465 247 99 53 chr9 2821492 2821691 -115040936 - MLT1G1 LTR MaLR -341 254 10 2537 53 3 0 chr9 2823104 2823408 -115039219 + AluYa5 SINE Alu 2 306 -5 31 68 0 0 chr9 2823807 2823866 -115038761 + AT_rich Low_complexity Low_complexity 1 59 0 237 276 150 0 chr9 2824236 2824363 -115038264 + MER117 DNA MER1_type 51 196 -1 372 270 63 9 chr9 2825907 2826018 -115036609 + MIR SINE MIR 8 124 -138 385 273 113 92 chr9 2826023 2826316 -115036311 - L2 LINE L2 0 3272 2974 245 281 177 0 chr9 2826313 2826409 -115036218 + MIR SINE MIR 115 227 -35 * 1317 278 55 26 chr9 2826693 2827147 -115035480 + LTR16C LTR ERVL 1 467 -24 970 294 71 34 chr9 2827157 2827664 -115034963 + LTR67 LTR ERVL 23 548 -9 601 270 82 0 chr9 2827670 2827903 -115034724 - LTR33A LTR ERVL 0 523 272 204 315 121 60 chr9 2827965 2828114 -115034513 - L2 LINE L2 -1141 2173 2016 3057 161 21 3 chr9 2828658 2829237 -115033390 - L1MA8 LINE L1 -22 6269 5681 320 327 69 25 chr9 2829242 2829401 -115033226 + MIR SINE MIR 20 185 -77 186 43 0 0 chr9 2829514 2829537 -115033090 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr9 2830590 2830611 -115032016 + AT_rich Low_complexity Low_complexity 1 21 0 396 255 102 10 chr9 2831106 2831302 -115031325 - HAL1 LINE L1 -296 2211 1998 749 243 78 19 chr9 2831328 2831534 -115031093 - MIR SINE MIR -31 231 14 615 265 90 13 chr9 2831650 2831884 -115030743 - HAL1 LINE L1 -636 1871 1620 1155 248 110 63 chr9 2831903 2832676 -115029951 - HAL1 LINE L1 -1009 1498 690 349 391 14 0 chr9 2833598 2833736 -115028891 - MIR SINE MIR -98 164 25 435 309 33 48 chr9 2833913 2834123 -115028504 + L1MEd LINE L1 122 328 -5791 741 182 0 0 chr9 2834253 2834374 -115028253 + AluJo/FLAM SINE Alu 1 121 -191 1431 186 11 22 chr9 2834374 2834643 -115027984 + AluJo SINE Alu 27 292 -20 932 279 36 68 chr9 2834654 2835393 -115027234 + L1MEd LINE L1 494 1209 -4910 427 292 64 68 chr9 2835409 2835628 -115026999 + HAL1 LINE L1 1301 1518 -989 231 279 31 54 chr9 2836264 2836393 -115026234 + L1ME LINE L1 5610 5735 -386 417 281 136 28 chr9 2836579 2836875 -115025752 + L1ME4a LINE L1 5335 5689 -432 201 74 0 0 chr9 2836875 2836902 -115025725 + (TG)n Simple_repeat Simple_repeat 2 28 0 417 281 136 28 chr9 2836902 2837029 -115025598 + L1ME4a LINE L1 5689 5801 -320 30 59 0 0 chr9 2837059 2837110 -115025517 + AT_rich Low_complexity Low_complexity 1 51 0 243 225 78 47 chr9 2837136 2837265 -115025362 + L1ME4a LINE L1 5977 6109 -12 218 175 0 18 chr9 2837379 2837436 -115025191 + GA-rich Low_complexity Low_complexity 2 57 0 24 77 0 0 chr9 2837543 2837595 -115025032 + AT_rich Low_complexity Low_complexity 1 52 0 430 308 127 60 chr9 2838425 2838841 -115023786 + L2 LINE L2 2804 3247 -25 1719 243 94 8 chr9 2838843 2839354 -115023273 + L1ME3A LINE L1 5613 6167 -3 211 338 12 12 chr9 2840589 2840669 -115021958 + L2 LINE L2 2970 3049 -223 647 203 49 7 chr9 2840784 2840927 -115021700 - MIR SINE MIR -3 259 111 273 348 71 7 chr9 2842306 2842447 -115020180 + L2 LINE L2 3116 3265 -7 5214 175 17 6 chr9 2843522 2844585 -115018042 - L1 LINE L1 -1894 4252 3178 305 291 101 20 chr9 2844586 2844734 -115017893 - L2 LINE L2 -274 2998 2839 1810 101 42 32 chr9 2844787 2845095 -115017532 + L1MA3 LINE L1 5994 6304 -1 269 284 216 61 chr9 2845119 2845397 -115017230 + L2 LINE L2 2988 3308 -5 2212 90 0 0 chr9 2845416 2845717 -115016910 + L1PB1 LINE L1 5851 6151 0 427 286 138 22 chr9 2846931 2847162 -115015465 - MIR SINE MIR 0 262 5 847 140 25 13 chr9 2848838 2848995 -115013632 + L1M4b LINE L1 -520 4294966934 -6690 1365 216 28 21 chr9 2849000 2849389 -115013238 + L1 LINE L1 4848 5239 -907 297 54 0 0 chr9 2849390 2849427 -115013200 - MER61A LTR ERV1 0 343 307 337 57 0 38 chr9 2849427 2849480 -115013147 - MLT2A2 LTR ERVL 0 453 403 375 270 0 0 chr9 2849508 2849597 -115013030 - L1MC4 LINE L1 -1340 6702 6614 339 216 45 23 chr9 2849579 2849667 -115012960 + L1MC4 LINE L1 6614 6703 -1339 * 2924 81 0 12 chr9 2849669 2849686 -115012941 - MLT2A1 LTR ERVL -40 404 388 189 107 0 0 chr9 2849686 2849714 -115012913 + (TATATG)n Simple_repeat Simple_repeat 1 28 0 2924 81 0 12 chr9 2849714 2850105 -115012522 - MLT2A1 LTR ERVL -56 388 1 1531 140 29 57 chr9 2850195 2850545 -115012082 + L1MA9 LINE L1 5738 6077 -235 528 214 14 4 chr9 2850551 2850684 -115011943 + L1MA9 LINE L1 6180 6334 0 4612 239 52 11 chr9 2850692 2851836 -115010791 + L1M4b LINE L1 -372 818 -5510 281 230 63 0 chr9 2851844 2851961 -115010666 + L1M4b LINE L1 1806 1886 -4540 21379 37 12 10 chr9 2852226 2855709 -115006918 - L1PA4 LINE L1 0 6155 2667 5559 109 6 13 chr9 2855772 2856632 -115005995 + L1PA10 LINE L1 5305 6158 -10 271 173 245 43 chr9 2856655 2856671 -115005956 + L1MB8 LINE L1 5179 5190 -956 1900 181 33 33 chr9 2856671 2857035 -115005592 - THE1B LTR MaLR 0 364 1 271 173 245 43 chr9 2857035 2857157 -115005470 + L1MB8 LINE L1 5190 5345 -801 * 13454 147 37 21 chr9 2857156 2857505 -115005122 + L1PBa LINE L1 3 345 -6518 1800 94 4 33 chr9 2857505 2857750 -115004877 + AluSx SINE Alu 50 287 -25 203 0 0 36 chr9 2857754 2857782 -115004845 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 13454 147 37 21 chr9 2857782 2859939 -115002688 + L1PBa LINE L1 347 2552 -4311 12078 186 49 14 chr9 2859951 2866361 -114996266 + L1PB1 LINE L1 1 6864 -3 25 0 0 0 chr9 2866361 2866386 -114996241 + AT_rich Low_complexity Low_complexity 1 25 0 3619 179 28 43 chr9 2866393 2866538 -114996089 + L1MB8 LINE L1 5338 5484 -694 2166 122 0 3 chr9 2866538 2866832 -114995795 - AluSx SINE Alu -19 293 1 3619 179 28 43 chr9 2866832 2867537 -114995090 + L1MB8 LINE L1 5484 6175 -3 5862 49 3 0 chr9 2867757 2868474 -114994153 + L1PA7 LINE L1 5435 6153 -1 830 356 30 8 chr9 2868642 2869013 -114993614 - LTR16C LTR ERVL -11 480 102 340 236 62 35 chr9 2869733 2869877 -114992750 + MER103 DNA DNA 17 164 -2 538 281 43 0 chr9 2869942 2870081 -114992546 - MIR3 SINE MIR -51 157 13 391 239 141 33 chr9 2870442 2870626 -114992001 + MLT1J2 LTR MaLR 244 447 -3 563 337 80 52 chr9 2870887 2871581 -114991046 + L2 LINE L2 2550 3250 -22 210 118 0 0 chr9 2871813 2871847 -114990780 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 277 323 42 0 chr9 2871946 2872042 -114990585 + MIR SINE MIR 16 115 -147 435 286 28 45 chr9 2872225 2872403 -114990224 - MIR SINE MIR -84 178 4 274 351 105 12 chr9 2872866 2873037 -114989590 - MIR3 SINE MIR -3 205 19 196 286 44 33 chr9 2874519 2874610 -114988017 + MIR SINE MIR 2 93 -169 182 150 25 0 chr9 2874758 2874798 -114987829 + (CATAT)n Simple_repeat Simple_repeat 3 43 0 1130 284 94 23 chr9 2875473 2876047 -114986580 + MLT1L LTR MaLR 1 615 0 224 345 12 12 chr9 2876091 2876175 -114986452 + L2 LINE L2 3180 3263 -9 392 355 26 19 chr9 2876514 2876669 -114985958 - L2 LINE L2 -1 3271 3116 2020 142 10 0 chr9 2877057 2877359 -114985268 + AluSx SINE Alu 1 305 -7 370 291 82 0 chr9 2877704 2877814 -114984813 + MIR SINE MIR 29 147 -115 1913 163 29 27 chr9 2877839 2878213 -114984414 + THE1C LTR MaLR 1 375 0 320 202 24 12 chr9 2878358 2878442 -114984185 + L1ME3A LINE L1 6077 6161 -9 23 0 0 0 chr9 2878587 2878610 -114984017 + AT_rich Low_complexity Low_complexity 1 23 0 340 264 90 0 chr9 2878738 2878882 -114983745 - L1ME4a LINE L1 -289 5832 5676 369 0 0 0 chr9 2879738 2879779 -114982848 + (CA)n Simple_repeat Simple_repeat 1 41 0 265 330 92 63 chr9 2881350 2881698 -114980929 + L2 LINE L2 2362 2719 -595 1489 217 28 12 chr9 2882011 2882370 -114980257 + MLT1A1 LTR MaLR 1 365 0 367 115 297 40 chr9 2882371 2882519 -114980108 - MER53 DNA DNA -2 187 2 384 283 83 49 chr9 2882615 2882820 -114979807 + HAL1 LINE L1 1 212 -2295 246 332 50 50 chr9 2882940 2883160 -114979467 + HAL1 LINE L1 410 629 -1878 834 250 126 57 chr9 2883235 2883778 -114978849 + HAL1 LINE L1 780 1381 -1126 537 135 21 0 chr9 2883778 2883874 -114978753 + L1MB3 LINE L1 6083 6180 -3 834 250 126 57 chr9 2883874 2884011 -114978616 + HAL1 LINE L1 1381 1507 -1000 456 175 0 0 chr9 2884028 2884108 -114978519 + MADE1 DNA Mariner 1 80 0 1872 146 24 3 chr9 2884149 2884444 -114978183 + AluSx SINE Alu 3 303 -9 196 269 115 0 chr9 2884714 2884766 -114977861 - L2 LINE L2 -1 3271 3214 2128 152 0 15 chr9 2884774 2885116 -114977511 + MER1B DNA MER1_type 1 337 0 203 325 77 41 chr9 2885259 2885453 -114977174 - L2 LINE L2 -162 3110 2910 207 384 139 17 chr9 2885649 2885821 -114976806 + L2 LINE L2 3076 3268 -4 216 274 96 14 chr9 2888110 2888183 -114974444 - L2 LINE L2 -5 3267 3189 950 307 56 14 chr9 2888199 2888554 -114974073 - MLT1I LTR MaLR 0 409 40 22 0 0 0 chr9 2888989 2889011 -114973616 + AT_rich Low_complexity Low_complexity 1 22 0 311 299 0 21 chr9 2889064 2889161 -114973466 + L1MDa LINE L1 2459 2553 -3987 840 163 0 7 chr9 2889162 2889297 -114973330 + AluJo SINE Alu 1 134 -178 536 225 45 64 chr9 2889368 2889595 -114973032 + L1MDa LINE L1 2637 2860 -3680 2222 91 3 0 chr9 2889595 2889882 -114972745 + AluSp SINE Alu 1 288 -25 536 225 45 64 chr9 2889882 2889921 -114972706 + L1MDa LINE L1 2860 2898 -3642 3001 144 44 94 chr9 2889924 2890680 -114971947 + L1MB2 LINE L1 5449 6166 -5 834 272 121 49 chr9 2890739 2891273 -114971354 - MLT1F1 LTR MaLR -1 566 1 705 266 77 29 chr9 2891275 2891663 -114970964 + L1MDa LINE L1 2952 3363 -3177 2121 88 4 0 chr9 2891663 2891936 -114970691 + AluY SINE Alu 34 307 -4 705 266 77 29 chr9 2891936 2891964 -114970663 + L1MDa LINE L1 3363 3388 -3152 5644 180 161 28 chr9 2892185 2893749 -114968878 - MER52A LTR ERV1 0 1755 6 2879 249 58 43 chr9 2894043 2896328 -114966299 - L1 LINE L1 -3534 2816 830 1999 150 10 0 chr9 2896351 2896645 -114965982 + AluSx SINE Alu 1 297 -15 21629 100 9 5 chr9 2896647 2902312 -114960315 + L1PA7 LINE L1 748 6469 0 931 278 116 10 chr9 2902540 2902936 -114959691 + HAL1 LINE L1 1530 1967 -540 1101 284 149 15 chr9 2903627 2904163 -114958464 - L1 LINE L1 -5672 609 2 467 269 52 84 chr9 2904412 2905392 -114957235 + L1MEd LINE L1 648 1692 -884 893 241 67 15 chr9 2905606 2906008 -114956619 - L1M4 LINE L1 -2751 3395 2973 600 263 32 21 chr9 2906481 2906840 -114955787 + L1MEd LINE L1 2113 2437 -3778 3153 100 0 4 chr9 2906851 2907303 -114955324 - MER9 LTR ERVK -61 450 1 1542 246 66 26 chr9 2907464 2908203 -114954424 + L1MEd LINE L1 2704 3472 -2743 192 304 18 0 chr9 2908545 2908601 -114954026 + L2 LINE L2 3214 3270 -2 1349 214 121 6 chr9 2908708 2909063 -114953564 + MSTD LTR MaLR 1 396 0 2402 124 5 22 chr9 2911120 2911490 -114951137 + THE1B LTR MaLR 1 364 0 230 356 0 26 chr9 2912133 2912248 -114950379 - L2 LINE L2 -179 3093 2982 2276 94 0 0 chr9 2913666 2913954 -114948673 - AluSg SINE Alu -22 288 1 218 319 56 14 chr9 2914037 2914109 -114948518 - L2 LINE L2 -44 3228 3154 189 292 157 0 chr9 2914138 2914227 -114948400 + L2 LINE L2 3200 3302 -11 426 238 65 38 chr9 2914738 2914923 -114947704 + L1ME4a LINE L1 5929 6118 -3 299 222 52 30 chr9 2915486 2915621 -114947006 + L1ME4a LINE L1 5984 6121 0 2353 137 72 10 chr9 2916353 2916756 -114945871 + MSTA LTR MaLR 1 428 0 224 234 0 0 chr9 2917053 2917100 -114945527 + MER91A DNA MER1_type 2 48 -148 1741 194 85 8 chr9 2917194 2917595 -114945032 + MLT1C LTR MaLR 34 465 -2 225 224 0 52 chr9 2918919 2918977 -114943650 + MIR SINE MIR 99 153 -55 199 54 54 0 chr9 2919117 2919154 -114943473 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 517 197 230 0 chr9 2919158 2919310 -114943317 + MER5A DNA MER1_type 3 189 0 706 226 65 0 chr9 2919814 2919982 -114942645 - MER20 DNA MER1_type 0 219 41 2576 134 25 2 chr9 2919987 2920402 -114942225 - MSTB LTR MaLR 0 414 2 1479 221 25 43 chr9 2920708 2921152 -114941475 - LTR40b LTR ERVL 0 462 27 211 336 159 0 chr9 2921163 2921270 -114941357 + L2 LINE L2 3186 3309 -4 2142 195 86 13 chr9 2921352 2921819 -114940808 - MLT1D LTR MaLR -2 503 3 232 322 226 0 chr9 2922242 2922419 -114940208 - MIR SINE MIR -18 244 28 998 235 9 0 chr9 2922528 2922745 -114939882 + MER58A DNA MER1_type 1 219 -5 2016 183 113 33 chr9 2922745 2923185 -114939442 + MLT2B1 LTR ERVL 1 484 -36 419 35 18 0 chr9 2923185 2923242 -114939385 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2016 183 113 33 chr9 2923242 2923281 -114939346 + MLT2B1 LTR ERVL 484 518 -2 315 303 0 55 chr9 2923292 2923401 -114939226 - L1ME3A LINE L1 -105 6065 5963 395 260 1 9 chr9 2923498 2923631 -114938996 - L1ME3A LINE L1 -469 5693 5561 255 103 0 0 chr9 2923631 2923670 -114938957 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 5236 154 31 23 chr9 2923670 2923919 -114938708 - L1MA5A LINE L1 -9 6288 6042 2034 151 15 0 chr9 2923919 2924250 -114938377 + MER1B DNA MER1_type 2 337 0 5236 154 31 23 chr9 2924250 2925797 -114936830 - L1MA5A LINE L1 -255 6042 4474 23 0 0 0 chr9 2925797 2925820 -114936807 + AT_rich Low_complexity Low_complexity 1 23 0 4554 144 5 1 chr9 2925820 2926588 -114936039 - L1PA13 LINE L1 -6 6157 5387 * 5751 169 8 6 chr9 2926582 2927666 -114934961 - L1PA13 LINE L1 -1315 4831 3745 9179 223 26 13 chr9 2927666 2930469 -114932158 - L1 LINE L1 -1643 5145 2349 24 32 0 0 chr9 2930475 2930506 -114932121 + AT_rich Low_complexity Low_complexity 1 31 0 10530 193 28 52 chr9 2930522 2932850 -114929777 - L1 LINE L1 -4514 2275 3 1842 257 120 45 chr9 2932890 2934672 -114927955 - L1MC/D LINE L1 -707 5444 3632 21 36 0 0 chr9 2934973 2935001 -114927626 + AT_rich Low_complexity Low_complexity 1 28 0 802 263 64 57 chr9 2935027 2935765 -114926862 - L1MC/D LINE L1 -2630 3516 2774 24 32 0 0 chr9 2935843 2935874 -114926753 + AT_rich Low_complexity Low_complexity 1 31 0 212 143 48 0 chr9 2935928 2935970 -114926657 + (TATG)n Simple_repeat Simple_repeat 4 47 0 312 304 7 22 chr9 2936823 2936961 -114925666 + CT-rich Low_complexity Low_complexity 3 138 0 583 226 0 51 chr9 2937391 2937528 -114925099 - FLAM_C SINE Alu -3 130 1 2297 116 0 3 chr9 2937846 2938149 -114924478 - AluSq SINE Alu -11 302 1 658 282 39 83 chr9 2938417 2938900 -114923727 + MLT1J LTR MaLR 23 484 -27 705 243 53 37 chr9 2938936 2939179 -114923448 + MIR SINE MIR 14 260 -2 207 0 0 0 chr9 2940453 2940476 -114922151 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1069 152 0 6 chr9 2941394 2941559 -114921068 + AluSg/x SINE Alu 125 288 -24 1376 238 42 118 chr9 2942783 2942957 -114919670 + MLT1E LTR MaLR 5 191 -402 2408 98 3 0 chr9 2942957 2943264 -114919363 + AluSg SINE Alu 1 308 -2 1376 238 42 118 chr9 2943264 2943714 -114918913 + MLT1E LTR MaLR 191 581 -12 802 147 84 101 chr9 2946123 2946361 -114916266 + MLT1B LTR MaLR 22 255 -135 2474 180 30 8 chr9 2946749 2947243 -114915384 + MLT1D LTR MaLR 1 505 0 734 133 0 8 chr9 2947253 2947381 -114915246 + (TCCCC)n Simple_repeat Simple_repeat 3 129 0 370 308 0 0 chr9 2947774 2947865 -114914762 - MIR SINE MIR -88 174 84 310 232 62 40 chr9 2948140 2948366 -114914261 + L1MC/D LINE L1 5600 5829 -303 471 306 100 58 chr9 2948527 2948926 -114913701 + L1MC/D LINE L1 3925 4340 -1806 42 57 0 0 chr9 2949016 2949086 -114913541 + AT_rich Low_complexity Low_complexity 1 70 0 425 308 47 65 chr9 2949173 2949911 -114912716 + L1MC/D LINE L1 4549 5277 -869 1105 279 69 42 chr9 2949921 2950369 -114912258 + L1MC/D LINE L1 5318 5777 -2031 22 35 0 0 chr9 2950369 2950398 -114912229 + AT_rich Low_complexity Low_complexity 1 29 0 969 193 0 0 chr9 2950399 2950560 -114912067 + MSTB LTR MaLR 1 161 -265 * 2366 184 92 2 chr9 2950551 2950987 -114911640 - LTR36 LTR ERV1 -40 571 97 4888 152 38 7 chr9 2951004 2951811 -114910816 - MSTA-int LTR MaLR -819 832 1 2436 174 48 17 chr9 2951811 2952226 -114910401 - MSTA LTR MaLR 0 428 1 354 111 122 11 chr9 2952227 2952317 -114910310 - LTR36 LTR ERV1 -511 100 1 893 167 0 0 chr9 2952317 2952455 -114910172 + MSTB LTR MaLR 287 424 -2 4745 204 47 6 chr9 2952466 2953410 -114909217 + MSTB-int LTR MaLR 5 986 -665 191 325 84 0 chr9 2954045 2954128 -114908499 - L2 LINE L2 0 3272 3183 231 304 72 16 chr9 2955609 2955734 -114906893 + L1ME LINE L1 324 455 -5615 382 224 64 55 chr9 2955803 2956023 -114906604 + L1ME LINE L1 446 662 -5421 1403 130 5 0 chr9 2956052 2956252 -114906375 + AluSx SINE Alu 1 201 -111 884 256 0 0 chr9 2956260 2956432 -114906195 - MER58A DNA MER1_type -52 172 1 2298 350 57 25 chr9 2956486 2958550 -114904077 - ERVL LTR ERVL -1151 4613 2453 413 341 24 54 chr9 2958545 2959012 -114903615 - ERVL LTR ERVL -3829 1167 728 * 182 345 136 9 chr9 2960116 2960226 -114902401 - L2 LINE L2 -20 3293 3170 2643 173 22 7 chr9 2960317 2960763 -114901864 + LTR32 LTR ERVL 19 471 0 703 293 43 17 chr9 2961030 2961389 -114901238 - MLT1I LTR MaLR 0 409 2 471 285 36 112 chr9 2961412 2961717 -114900910 + L2 LINE L2 2990 3271 -1 503 210 145 22 chr9 2962459 2962622 -114900005 + MER5A DNA MER1_type 4 189 0 246 297 47 27 chr9 2963483 2963631 -114898996 + L2 LINE L2 1597 1747 -1567 182 364 119 36 chr9 2963845 2964257 -114898370 + L2 LINE L2 2822 3267 -5 1929 135 0 14 chr9 2965333 2965647 -114896980 - AluSx SINE Alu 0 310 1 21 82 0 0 chr9 2966362 2966411 -114896216 + AT_rich Low_complexity Low_complexity 1 49 0 27 49 0 0 chr9 2966447 2966488 -114896139 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr9 2966761 2966791 -114895836 + AT_rich Low_complexity Low_complexity 1 30 0 314 242 31 47 chr9 2967509 2967612 -114895015 - MIR SINE MIR -108 100 3 * 492 195 146 8 chr9 2967612 2967728 -114894899 - MER5A DNA MER1_type -15 174 42 2236 91 20 14 chr9 2967978 2968275 -114894352 - AluSq SINE Alu -14 299 1 4777 210 48 10 chr9 2968334 2968533 -114894094 - MER45B DNA AcHobo -548 1033 843 2338 88 0 0 chr9 2968533 2968828 -114893799 - AluY SINE Alu -16 295 1 4777 210 48 10 chr9 2968828 2969620 -114893007 - MER45B DNA AcHobo -738 843 4 3152 95 27 0 chr9 2969743 2970154 -114892473 + L1PA10 LINE L1 5743 6164 -4 2138 133 0 0 chr9 2971339 2971633 -114890994 - AluSg SINE Alu -16 294 1 469 310 62 31 chr9 2971677 2971903 -114890724 - L1MC/D LINE L1 -2034 5774 5542 2212 181 0 3 chr9 2972126 2972491 -114890136 + MLT2D LTR ERVL 1 364 -50 633 171 0 0 chr9 2972491 2972608 -114890019 + (TCCA)n Simple_repeat Simple_repeat 1 117 0 279 117 0 83 chr9 2972608 2972668 -114889959 + MLT2D LTR ERVL 343 397 0 368 273 58 65 chr9 2972709 2972984 -114889643 + L1ME LINE L1 3951 4223 -1923 254 311 56 11 chr9 2973351 2973441 -114889186 - MIR SINE MIR -95 113 20 956 251 4 30 chr9 2973465 2973696 -114888931 - MIR SINE MIR -1 261 37 21 0 0 0 chr9 2973777 2973798 -114888829 + AT_rich Low_complexity Low_complexity 1 21 0 2295 78 0 0 chr9 2973798 2974104 -114888523 + AluY SINE Alu 1 306 0 225 288 45 15 chr9 2974310 2974376 -114888251 + MIR SINE MIR 20 87 -175 694 265 26 48 chr9 2974500 2974730 -114887897 + MIR SINE MIR 36 260 -2 210 71 0 0 chr9 2975574 2975602 -114887025 + (TG)n Simple_repeat Simple_repeat 1 28 0 662 272 56 75 chr9 2975912 2976592 -114886035 + L1ME LINE L1 5148 5819 -302 1381 205 4 4 chr9 2976652 2976915 -114885712 + AluJo SINE Alu 32 294 -18 398 151 27 0 chr9 2977020 2977093 -114885534 + MER116 DNA Mariner 1 75 -5 21 0 0 0 chr9 2977094 2977115 -114885512 + AT_rich Low_complexity Low_complexity 1 21 0 421 265 71 109 chr9 2977383 2977621 -114885006 - MIR SINE MIR -25 237 9 783 279 59 41 chr9 2977920 2977996 -114884631 - LTR33 LTR ERVL -28 493 420 1291 162 69 0 chr9 2977996 2978200 -114884427 + MER20 DNA MER1_type 2 219 0 783 279 59 41 chr9 2978200 2978464 -114884163 - LTR33 LTR ERVL -101 420 147 615 159 102 64 chr9 2978634 2978791 -114883836 + MLT1A2 LTR MaLR 1 163 -211 193 204 0 56 chr9 2978853 2978961 -114883666 + CT-rich Low_complexity Low_complexity 6 107 0 908 184 61 31 chr9 2978961 2979157 -114883470 + MLT1A2 LTR MaLR 173 374 0 364 268 274 6 chr9 2980040 2980208 -114882419 + MIR SINE MIR 2 214 -48 205 356 34 17 chr9 2980294 2980412 -114882215 - MIR SINE MIR -106 156 37 427 237 140 77 chr9 2980746 2980874 -114881753 - MIR SINE MIR -9 253 106 2434 72 7 7 chr9 2980874 2981181 -114881446 + AluSc SINE Alu 1 307 -2 427 237 140 77 chr9 2981181 2981259 -114881368 - MIR SINE MIR -156 106 34 4910 156 37 21 chr9 2981811 2983722 -114878905 + L1MA2 LINE L1 15 1895 -5828 2296 113 0 0 chr9 2983722 2984023 -114878604 - AluSg SINE Alu -9 301 1 4910 156 37 21 chr9 2984023 2985051 -114877576 + L1MA2 LINE L1 1895 2906 -4817 2845 100 11 0 chr9 2985051 2985421 -114877206 - THE1C LTR MaLR -1 374 1 11002 123 14 30 chr9 2985421 2987027 -114875600 - THE1C-int LTR MaLR 0 1580 1 2315 131 50 8 chr9 2987027 2987387 -114875240 - THE1C LTR MaLR 0 375 1 4910 156 37 21 chr9 2987387 2988656 -114873971 + L1MA2 LINE L1 2906 4154 -3569 977 62 86 0 chr9 2988656 2988784 -114873843 + MER85 DNA T2_type 1 139 0 4910 156 37 21 chr9 2988784 2991997 -114870630 + L1MA2 LINE L1 4154 7723 0 477 302 189 18 chr9 2992041 2992326 -114870301 - MLT1I LTR MaLR -7 402 69 25 65 0 0 chr9 2992593 2992639 -114869988 + AT_rich Low_complexity Low_complexity 1 46 0 2227 103 3 7 chr9 2992639 2992939 -114869688 - AluSx SINE Alu -13 299 1 273 324 72 0 chr9 2994203 2994314 -114868313 + MIR SINE MIR 71 189 -73 343 241 23 0 chr9 2994770 2994857 -114867770 - MER96 DNA MER1_type? -81 94 6 183 233 83 17 chr9 2995045 2995105 -114867522 + MIR SINE MIR 83 146 -62 287 231 0 26 chr9 2995149 2995227 -114867400 + L1MC5 LINE L1 7836 7911 -50 21 0 0 0 chr9 2995418 2995439 -114867188 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 2996567 2996588 -114866039 + AT_rich Low_complexity Low_complexity 1 21 0 2623 129 3 3 chr9 2996723 2997087 -114865540 + THE1B LTR MaLR 1 364 0 2071 192 117 16 chr9 2997891 2998344 -114864283 + MLT1D LTR MaLR 1 499 -6 2199 102 77 112 chr9 2998573 2999012 -114863615 + MSTA LTR MaLR 1 424 -4 189 313 0 0 chr9 2999033 2999081 -114863546 + MIR SINE MIR 68 115 -93 335 147 147 42 chr9 2999260 2999355 -114863272 + MIR3 SINE MIR 98 202 -6 297 235 0 29 chr9 2999516 2999584 -114863043 - L2 LINE L2 0 3272 3207 774 224 12 0 chr9 3000911 3001072 -114861555 + MER69A DNA AcHobo 1 163 -14 967 158 184 11 chr9 3001334 3001524 -114861103 + MER58A DNA MER1_type 2 224 0 349 296 82 47 chr9 3001736 3001969 -114860658 + L2 LINE L2 3073 3313 0 1990 119 59 54 chr9 3002136 3002507 -114860120 + THE1C LTR MaLR 1 373 -2 894 271 54 7 chr9 3003088 3003418 -114859209 - MLT1H1 LTR MaLR -4 551 171 255 259 99 25 chr9 3006246 3006327 -114856300 - MIR3 SINE MIR -11 197 111 296 216 0 0 chr9 3008661 3008712 -114853915 + L2 LINE L2 3252 3302 -11 443 302 26 0 chr9 3008950 3009066 -114853561 + MIR SINE MIR 64 182 -80 294 239 0 14 chr9 3009115 3009186 -114853441 + HsTC2 DNA Tc2 1827 1896 -2 411 276 178 36 chr9 3009808 3010145 -114852482 + L1MC4a LINE L1 5527 5911 -1897 21 0 0 0 chr9 3010145 3010166 -114852461 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr9 3010332 3010368 -114852259 + AT_rich Low_complexity Low_complexity 1 36 0 4161 172 80 13 chr9 3011470 3012244 -114850383 - LTR1B LTR ERV1 0 826 1 25 0 0 0 chr9 3012540 3012565 -114850062 + AT_rich Low_complexity Low_complexity 1 25 0 2368 172 63 27 chr9 3013075 3013516 -114849111 - LTR32 LTR ERVL 0 471 15 233 282 225 8 chr9 3013526 3013650 -114848977 + MIR SINE MIR 7 154 -63 1983 114 61 10 chr9 3013657 3013954 -114848673 + AluSx SINE Alu 1 312 0 792 287 137 20 chr9 3014707 3015197 -114847430 - L2 LINE L2 -1 3312 2767 333 226 20 88 chr9 3015212 3015314 -114847313 + LTR16A LTR ERVL 358 457 0 818 153 200 12 chr9 3015646 3015816 -114846811 + AluSg/x SINE Alu 71 272 -37 3185 111 12 10 chr9 3016103 3016522 -114846105 + MER4E LTR ERV1 1 503 -263 1890 141 0 0 chr9 3016522 3016798 -114845829 + AluSx SINE Alu 37 312 0 3185 111 12 10 chr9 3016798 3017061 -114845566 + MER4E LTR ERV1 503 764 -2 700 196 14 7 chr9 3017301 3017444 -114845183 - MER5A DNA MER1_type -45 144 1 312 266 124 80 chr9 3017448 3017674 -114844953 + MLT1J LTR MaLR 274 509 -2 3136 71 2 117 chr9 3018513 3019019 -114843608 - LTR7 LTR ERV1 -2 448 1 2304 102 59 13 chr9 3019019 3019392 -114843235 - HERVH LTR ERV1 0 7713 7324 1383 129 18 5 chr9 3019392 3019609 -114843018 - HERVH LTR ERV1 -1894 5819 5600 3100 127 3 2 chr9 3019610 3020230 -114842397 - HERVH LTR ERV1 -2564 5149 4481 * 5989 97 5 2 chr9 3020227 3021079 -114841548 - HERVH LTR ERV1 -3720 3993 3140 * 15227 112 24 27 chr9 3021058 3023805 -114838822 - HERVH LTR ERV1 -4718 2995 126 488 320 136 19 chr9 3024183 3024389 -114838238 + MIR SINE MIR 18 247 -15 728 266 13 42 chr9 3024846 3025083 -114837544 - MIR SINE MIR -3 259 30 188 178 67 67 chr9 3025244 3025289 -114837338 - L2 LINE L2 -86 3186 3142 192 287 35 46 chr9 3026037 3026124 -114836503 - L2 LINE L2 -168 3104 3019 644 256 207 33 chr9 3027051 3027501 -114835126 - HAL1 LINE L1 -24 2483 1956 814 190 42 60 chr9 3027925 3028141 -114834486 + MLT1L LTR MaLR 397 608 -7 1389 250 113 53 chr9 3028258 3028941 -114833686 - HAL1 LINE L1 -689 1818 1095 1118 209 25 4 chr9 3028944 3029179 -114833448 - AluJb SINE Alu -5 307 68 291 274 146 46 chr9 3029200 3029550 -114833077 - HAL1 LINE L1 -1469 1038 654 284 284 210 62 chr9 3029573 3030073 -114832554 - HAL1 LINE L1 -1933 574 1 2315 56 10 3 chr9 3030726 3031014 -114831613 - AluY SINE Alu -21 290 1 240 221 0 73 chr9 3032040 3032071 -114830556 - Tigger5 DNA MER2_type -355 63 38 2023 141 0 0 chr9 3032071 3032355 -114830272 + AluSx SINE Alu 13 296 -16 240 221 0 73 chr9 3032355 3032391 -114830236 - Tigger5 DNA MER2_type -380 38 1 2462 57 7 0 chr9 3032394 3032695 -114829932 - AluY SINE Alu -8 303 1 452 219 67 37 chr9 3032908 3033087 -114829540 + MER104 DNA Tc2 1 182 0 501 224 179 0 chr9 3033274 3033430 -114829197 + MIR SINE MIR 3 186 -76 487 110 0 0 chr9 3034182 3034255 -114828372 - Alu SINE Alu -3 307 235 1938 176 56 8 chr9 3034396 3034771 -114827856 + MER52A LTR ERV1 1361 1753 -2 1749 107 51 4 chr9 3034897 3035150 -114827477 - AluSq SINE Alu -48 265 1 268 393 51 9 chr9 3036096 3036432 -114826195 + HERV16 LTR ERVL 1023 1372 -3624 1081 337 80 18 chr9 3036497 3037176 -114825451 + HERV16 LTR ERVL 1512 2232 -3422 454 271 24 59 chr9 3037197 3037367 -114825260 - MIR SINE MIR -98 164 1 1541 240 272 25 chr9 3038121 3039211 -114823416 - L2 LINE L2 -10 3303 1927 23 0 0 0 chr9 3039479 3039502 -114823125 + AT_rich Low_complexity Low_complexity 1 23 0 908 274 42 33 chr9 3039515 3039851 -114822776 + L1ME LINE L1 5384 5722 -399 180 0 0 0 chr9 3040069 3040089 -114822538 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2227 267 192 39 chr9 3040206 3041657 -114820970 - L2 LINE L2 -1 3312 1649 857 139 46 13 chr9 3042721 3042872 -114819755 + MER20 DNA MER1_type 2 157 -62 531 281 108 25 chr9 3043873 3044076 -114818551 - MIR SINE MIR 0 262 43 843 249 182 44 chr9 3044374 3044831 -114817796 + HAL1 LINE L1 1230 1749 -758 1122 224 102 63 chr9 3044994 3045189 -114817438 + HAL1 LINE L1 1996 2182 -325 1347 197 66 16 chr9 3045189 3045509 -114817118 + MER46C DNA MER2_type 2 337 -1 1122 224 102 63 chr9 3045509 3045805 -114816822 + HAL1 LINE L1 2182 2506 -1 333 321 15 22 chr9 3046574 3046711 -114815916 + MIR SINE MIR 17 152 -110 933 135 47 57 chr9 3046730 3046922 -114815705 - MER20 DNA MER1_type -7 212 23 358 299 43 37 chr9 3047155 3047319 -114815308 - MIR3 SINE MIR -9 199 35 203 319 14 0 chr9 3048001 3048070 -114814557 + (TATG)n Simple_repeat Simple_repeat 2 71 0 910 189 0 12 chr9 3048176 3048340 -114814287 - AluJ SINE Alu -9 303 142 23 0 0 0 chr9 3048468 3048491 -114814136 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr9 3049654 3049691 -114812936 + AT_rich Low_complexity Low_complexity 1 37 0 1865 147 17 10 chr9 3049696 3049989 -114812638 + AluSx SINE Alu 1 295 -17 289 294 85 7 chr9 3050393 3050546 -114812081 - L1ME LINE L1 -304 5817 5653 266 271 0 0 chr9 3050550 3050620 -114812007 - L1ME LINE L1 -499 5622 5553 473 373 12 12 chr9 3051068 3051237 -114811390 + MIR3 SINE MIR 31 199 -9 419 250 61 14 chr9 3051289 3051437 -114811190 - MER103 DNA DNA -1 165 11 264 254 0 0 chr9 3052065 3052124 -114810503 - MER4-int LTR ERV1 -5442 1156 1098 484 311 24 6 chr9 3052353 3052517 -114810110 + MIR SINE MIR 23 189 -73 330 345 98 13 chr9 3052708 3052943 -114809684 + L1MC/D LINE L1 5547 5801 -2007 824 130 0 61 chr9 3052943 3053074 -114809553 - AluJ SINE Alu -178 134 12 1560 254 96 49 chr9 3053586 3054504 -114808123 + HAL1b LINE L1 123 1083 -265 250 184 145 20 chr9 3054522 3054674 -114807953 + HAL1b LINE L1 1178 1348 0 543 289 55 42 chr9 3055405 3055785 -114806842 + HAL1 LINE L1 1283 1667 -840 2153 112 14 0 chr9 3055931 3056226 -114806401 - AluSx SINE Alu -13 299 1 281 357 31 0 chr9 3056897 3057026 -114805601 - MIR3 SINE MIR -13 195 63 261 0 0 0 chr9 3057355 3057384 -114805243 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 226 372 149 8 chr9 3057902 3058023 -114804604 + L2 LINE L2 3125 3262 -10 868 210 110 0 chr9 3058519 3058809 -114803818 + LTR37A LTR ERV1 105 426 0 207 0 0 0 chr9 3058896 3058919 -114803708 + (TG)n Simple_repeat Simple_repeat 2 24 0 628 284 48 8 chr9 3058919 3059169 -114803458 + MIR SINE MIR 1 260 -2 769 281 53 81 chr9 3059336 3059844 -114802783 + MLT1J LTR MaLR 1 494 -17 1933 149 0 7 chr9 3059948 3060244 -114802383 - AluJo SINE Alu -12 300 7 250 325 36 0 chr9 3060724 3060807 -114801820 - MIR SINE MIR -65 197 112 233 232 10 81 chr9 3062510 3062609 -114800018 - MIR3 SINE MIR -11 197 106 244 373 127 9 chr9 3063501 3063611 -114799016 - L2 LINE L2 -23 3249 3127 560 238 98 12 chr9 3063616 3063780 -114798847 - MIR SINE MIR 0 262 85 2295 178 26 2 chr9 3063781 3064235 -114798392 + MLT1C LTR MaLR 2 466 -1 205 422 0 0 chr9 3064235 3064318 -114798309 - MIR SINE MIR -172 90 8 1268 165 9 0 chr9 3064784 3065008 -114797619 - L1PA15 LINE L1 -13 6152 5927 2391 130 16 3 chr9 3065370 3065748 -114796879 + MLT1B LTR MaLR 4 386 -4 230 300 0 0 chr9 3066322 3066382 -114796245 + (TG)n Simple_repeat Simple_repeat 2 61 0 478 241 24 60 chr9 3067848 3068014 -114794613 + LTR45 LTR ERV1 366 525 0 412 319 8 0 chr9 3068684 3068803 -114793824 + L2 LINE L2 3187 3306 -7 259 292 177 0 chr9 3068865 3068961 -114793666 - L2 LINE L2 0 3313 3201 663 215 115 68 chr9 3068982 3069173 -114793454 - MER20 DNA MER1_type -19 200 1 1410 291 76 10 chr9 3069175 3069869 -114792758 - L2 LINE L2 -119 3194 2458 423 292 146 0 chr9 3069873 3070010 -114792617 - MIR SINE MIR -104 158 2 1871 253 144 16 chr9 3070138 3071049 -114791578 + Charlie7 DNA MER1_type 436 1462 -1150 7676 185 83 22 chr9 3071053 3072362 -114790265 + L1M4c LINE L1 19 1246 -5138 1358 183 147 0 chr9 3072362 3072614 -114790013 - AluJb SINE Alu -13 289 1 7676 185 83 22 chr9 3072614 3072648 -114789979 + L1M4c LINE L1 1246 1276 -5108 2078 138 0 0 chr9 3072648 3072977 -114789650 + AluSx SINE Alu 4 312 0 7676 185 83 22 chr9 3072977 3073428 -114789199 + L1M4c LINE L1 1276 1924 -4460 2044 152 0 0 chr9 3073430 3073732 -114788895 - AluSx SINE Alu -10 302 1 572 185 8 0 chr9 3073813 3073932 -114788695 - L1MA9 LINE L1 -4 6308 6189 225 206 0 32 chr9 3073934 3073997 -114788630 + L1M4c LINE L1 2041 2101 -4283 * 1539 236 29 28 chr9 3073986 3074638 -114787989 + L1M4c LINE L1 2835 3487 -2895 501 134 0 0 chr9 3074657 3074739 -114787888 + L1MB3 LINE L1 1386 1467 -4917 317 146 0 0 chr9 3074741 3074789 -114787838 - Alu SINE Alu -15 287 240 2056 147 55 30 chr9 3074801 3075305 -114787322 - MLT2A2 LTR ERVL -22 532 2 3503 219 39 28 chr9 3075308 3076344 -114786283 + L1MB3 LINE L1 3481 4527 -1855 1934 153 88 5 chr9 3076343 3076728 -114785899 + L1MB3 LINE L1 5561 5977 -442 * 893 189 91 103 chr9 3076728 3077086 -114785541 + MLT1A1 LTR MaLR 1 428 -4 2301 161 33 5 chr9 3077086 3077516 -114785111 + L1MB3 LINE L1 5969 6410 -9 2112 234 90 17 chr9 3077527 3078295 -114784332 + Charlie7 DNA MER1_type 1462 2285 -327 294 253 49 31 chr9 3078499 3078518 -114784109 - L1MA10 LINE L1 0 6334 6316 2212 202 102 40 chr9 3078518 3079192 -114783435 - L1ME2 LINE L1 -11 6153 5438 21 0 0 0 chr9 3079436 3079457 -114783170 + AT_rich Low_complexity Low_complexity 1 21 0 2779 185 42 24 chr9 3080461 3081088 -114781539 + LTR9B LTR ERV1 7 644 0 722 206 101 42 chr9 3081502 3081897 -114780730 - MLT1A1 LTR MaLR 0 365 24 219 269 164 0 chr9 3081920 3081987 -114780640 + MIR SINE MIR 76 153 -55 642 198 161 0 chr9 3082238 3082400 -114780227 + MER5A DNA MER1_type 2 189 0 625 285 34 34 chr9 3082868 3082996 -114779631 - MIR SINE MIR -34 228 98 2252 186 83 2 chr9 3082996 3083463 -114779164 + MLT1D LTR MaLR 1 505 0 625 285 34 34 chr9 3083463 3083541 -114779086 - MIR SINE MIR -163 99 22 919 298 75 11 chr9 3085065 3085437 -114777190 + LTR16A LTR ERVL 55 450 0 871 190 34 34 chr9 3085624 3085748 -114776879 + MER3 DNA MER1_type 5 131 -78 1790 177 23 7 chr9 3085748 3085917 -114776710 - AluSx SINE Alu -2 310 132 1689 139 4 4 chr9 3085917 3086162 -114776465 - AluSx SINE Alu -15 297 53 1790 177 23 7 chr9 3086162 3086297 -114776330 - AluSx SINE Alu -180 132 1 871 190 34 34 chr9 3086297 3086377 -114776250 + MER3 DNA MER1_type 130 209 0 1320 219 40 15 chr9 3087983 3088307 -114774320 + MER57A LTR ERV1 72 403 0 320 181 97 42 chr9 3088308 3088380 -114774247 + MIR SINE MIR 45 120 -142 881 70 0 0 chr9 3089268 3089383 -114773244 + L1PA5 LINE L1 6024 6138 -16 215 122 0 24 chr9 3089527 3089568 -114773059 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 458 304 0 30 chr9 3090734 3090902 -114771725 + GA-rich Low_complexity Low_complexity 1 163 0 3460 96 18 20 chr9 3090956 3091510 -114771117 + L1P LINE L1 1296 1848 -4298 2054 122 3 28 chr9 3092054 3092375 -114770252 - AluSq SINE Alu 0 313 1 335 307 92 33 chr9 3092557 3092710 -114769917 + L2 LINE L2 2988 3149 -164 22 0 0 0 chr9 3092896 3092918 -114769709 + AT_rich Low_complexity Low_complexity 1 22 0 5865 132 52 9 chr9 3093422 3094503 -114768124 + L1MC1 LINE L1 5188 6317 -16 2541 75 80 3 chr9 3094531 3094906 -114767721 - L1PA13 LINE L1 -5 6158 5755 2479 89 3 3 chr9 3094907 3095265 -114767362 - L1PA12 LINE L1 -329 5839 5482 809 111 0 0 chr9 3096617 3096725 -114765902 + AluSg/x SINE Alu 175 282 -30 345 216 0 0 chr9 3096933 3097007 -114765620 + L1MC4 LINE L1 7785 7858 -184 427 324 0 16 chr9 3097068 3097250 -114765377 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 247 0 0 chr9 3097304 3097377 -114765250 + L1MC4 LINE L1 7925 7997 -45 424 211 0 21 chr9 3097377 3097472 -114765155 - FAM SINE Alu -5 180 88 1195 280 75 20 chr9 3098018 3098732 -114763895 + L1ME3A LINE L1 5183 5934 -236 21 0 0 0 chr9 3099803 3099824 -114762803 + AT_rich Low_complexity Low_complexity 1 21 0 977 134 56 12 chr9 3099899 3100081 -114762546 - THE1B LTR MaLR -2 362 180 883 241 0 0 chr9 3100198 3100385 -114762242 - THE1B LTR MaLR -177 187 1 2402 66 0 38 chr9 3100497 3100814 -114761813 + AluY SINE Alu 1 305 -6 380 312 102 16 chr9 3101056 3101242 -114761385 + MIR SINE MIR 61 262 0 242 389 18 42 chr9 3101781 3101948 -114760679 - MIR SINE MIR -79 183 21 225 0 0 0 chr9 3102126 3102151 -114760476 + (TG)n Simple_repeat Simple_repeat 1 25 0 292 277 125 8 chr9 3103662 3103786 -114758841 - MIR SINE MIR -63 145 19 493 256 96 0 chr9 3104248 3104404 -114758223 + MLT1J2 LTR MaLR 280 450 0 313 336 112 52 chr9 3104423 3104709 -114757918 + L2 LINE L2 2967 3269 -3 263 247 108 32 chr9 3105075 3105168 -114757459 + L2 LINE L2 2874 2973 -341 1160 292 78 19 chr9 3105226 3105669 -114756958 + LTR33 LTR ERVL 1 477 -44 2744 106 39 14 chr9 3105669 3106047 -114756580 + MLT2A1 LTR ERVL 1 393 -51 308 102 0 17 chr9 3106047 3106106 -114756521 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2744 106 39 14 chr9 3106106 3106160 -114756467 + MLT2A1 LTR ERVL 393 444 0 1160 292 78 19 chr9 3106160 3106203 -114756424 + LTR33 LTR ERVL 477 516 -5 2509 0 0 0 chr9 3106318 3106586 -114756041 - AluYa5 SINE Alu -6 305 38 323 351 46 23 chr9 3106800 3106931 -114755696 + L2 LINE L2 3134 3267 -5 1821 163 15 18 chr9 3107581 3107918 -114754709 + MER2 DNA MER2_type 1 336 -9 284 302 147 0 chr9 3107942 3108071 -114754556 - MIR SINE MIR -5 257 110 2251 280 2 0 chr9 3108148 3108548 -114754079 - L1PA3 LINE L1 -3 6152 5752 225 262 131 0 chr9 3109523 3109584 -114753043 - L2 LINE L2 -19 3294 3226 520 260 172 21 chr9 3110158 3110443 -114752184 + MLT1L LTR MaLR 38 365 -250 272 383 104 0 chr9 3110577 3110778 -114751849 - L2 LINE L2 -663 2651 2430 252 59 0 0 chr9 3110893 3110927 -114751700 + (CTG)n Simple_repeat Simple_repeat 2 35 0 295 353 24 50 chr9 3111112 3111452 -114751175 + LTR16C LTR ERVL 159 489 -2 967 194 122 56 chr9 3111686 3112006 -114750621 - MER2 DNA MER2_type 0 344 4 1066 261 12 4 chr9 3112456 3112791 -114749836 + MLT1I LTR MaLR 13 388 -21 919 194 60 26 chr9 3113462 3113694 -114748933 + MLT1C LTR MaLR 11 250 -217 324 333 33 13 chr9 3113943 3114096 -114748531 + MIR SINE MIR 23 178 -84 387 153 0 0 chr9 3114105 3114177 -114748450 + LTR67 LTR ERVL 3 74 -483 502 308 136 40 chr9 3114232 3114606 -114748021 + LTR67 LTR ERVL 148 557 0 314 268 6 159 chr9 3115581 3115812 -114746815 - MIR SINE MIR -3 205 9 790 328 16 4 chr9 3115938 3116185 -114746442 + MIR SINE MIR 13 262 0 2226 114 0 7 chr9 3116534 3116840 -114745787 - AluSx SINE Alu -8 304 1 401 333 56 12 chr9 3116870 3117032 -114745595 - MIR3 SINE MIR -4 204 36 421 183 65 11 chr9 3117649 3117742 -114744885 + MER5A DNA MER1_type 9 106 -83 704 327 28 6 chr9 3119081 3119442 -114743185 + L1ME2 LINE L1 5452 5820 -301 1456 148 60 27 chr9 3120245 3120577 -114742050 - L1MA8 LINE L1 0 6291 5949 523 118 0 24 chr9 3121571 3121656 -114740971 - AluSc SINE Alu -226 83 1 3099 164 11 9 chr9 3121657 3122181 -114740446 + HUERS-P3 LTR ERV1 6198 6722 -2197 10382 184 29 39 chr9 3122181 3123335 -114739292 + HUERS-P3 LTR ERV1 6863 8028 -891 210 271 0 68 chr9 3123335 3123394 -114739233 + MER5A DNA MER1_type 1 55 -134 10382 184 29 39 chr9 3123394 3123411 -114739216 + HUERS-P3 LTR ERV1 8028 8044 -875 2250 114 0 7 chr9 3123411 3123719 -114738908 - AluSg SINE Alu -4 306 1 10382 184 29 39 chr9 3123719 3124567 -114738060 + HUERS-P3 LTR ERV1 8044 8919 0 2543 189 19 68 chr9 3124567 3125211 -114737416 + LTR9 LTR ERV1 1 612 0 1430 177 21 36 chr9 3125211 3125544 -114737083 - L1M4 LINE L1 -477 5707 5380 7146 46 2 0 chr9 3125644 3126999 -114735628 + L1PA5 LINE L1 4782 6138 -16 505 274 86 4 chr9 3127047 3127281 -114735346 + L1ME2 LINE L1 5879 6131 -33 665 200 18 12 chr9 3128725 3128765 -114733862 - L1MB1 LINE L1 -209 5959 5921 606 193 0 0 chr9 3128765 3128900 -114733727 - L1MB1 LINE L1 -1 6167 6033 665 200 18 12 chr9 3128900 3129029 -114733598 - L1MB1 LINE L1 -247 5921 5789 220 386 8 8 chr9 3129293 3129420 -114733207 + L2 LINE L2 2629 2755 -559 527 274 91 43 chr9 3129499 3129695 -114732932 + MIR SINE MIR 20 225 -37 209 194 0 0 chr9 3130165 3130201 -114732426 + (TGAA)n Simple_repeat Simple_repeat 4 39 0 186 133 0 0 chr9 3130922 3130952 -114731675 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 1010 251 64 6 chr9 3131379 3131721 -114730906 - L1MB1 LINE L1 -554 5616 5255 710 333 89 24 chr9 3131851 3132223 -114730404 + LTR16C LTR ERVL 90 485 -6 235 270 79 0 chr9 3133070 3133159 -114729468 + L2 LINE L2 3218 3313 0 1873 155 0 7 chr9 3133300 3133597 -114729030 - AluJb SINE Alu -17 295 1 272 333 0 0 chr9 3133794 3133881 -114728746 - L2 LINE L2 -4 3268 3182 260 303 40 30 chr9 3134025 3134124 -114728503 - L2 LINE L2 -11 3302 3203 497 248 272 5 chr9 3134208 3134410 -114728217 + MIR SINE MIR 7 262 0 1345 271 123 35 chr9 3135014 3136138 -114726489 + L1ME2 LINE L1 322 1538 -4677 922 246 73 39 chr9 3136290 3136787 -114725840 + L1ME2 LINE L1 1864 2343 -3872 297 51 0 0 chr9 3136787 3136826 -114725801 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 684 67 0 0 chr9 3136825 3136915 -114725712 + (TA)n Simple_repeat Simple_repeat 2 91 0 922 246 73 39 chr9 3136826 3137405 -114725222 + L1ME2 LINE L1 2343 2924 -3291 1620 244 55 32 chr9 3137417 3138069 -114724558 + L1ME2 LINE L1 3452 4118 -2097 * 1643 255 29 27 chr9 3138064 3138252 -114724375 + L1ME2 LINE L1 5259 5445 -788 2233 102 0 37 chr9 3138252 3138577 -114724050 + AluSp SINE Alu 1 313 0 2140 91 30 14 chr9 3138586 3138883 -114723744 + AluSc SINE Alu 6 307 -2 1643 255 29 27 chr9 3138883 3139401 -114723226 + L1ME2 LINE L1 5452 5955 -278 437 35 0 0 chr9 3139408 3139465 -114723162 - L1P LINE L1 -5916 230 174 2589 93 0 5 chr9 3139469 3139857 -114722770 + L1P LINE L1 674 1059 -5087 1429 176 87 31 chr9 3140383 3140764 -114721863 + LTR52 LTR ERVL 18 419 -2 259 257 76 29 chr9 3141203 3141308 -114721319 - MIR SINE MIR -94 168 59 349 259 108 76 chr9 3141654 3141839 -114720788 - MIR3 SINE MIR -10 198 8 623 228 14 100 chr9 3142006 3142287 -114720340 - L1MD2 LINE L1 -24 6335 6079 608 287 59 21 chr9 3142421 3142658 -114719969 + MIR SINE MIR 17 262 0 494 283 97 39 chr9 3142674 3142985 -114719642 - HAL1 LINE L1 -11 2496 2168 1306 266 55 82 chr9 3143182 3144174 -114718453 - HAL1 LINE L1 -803 1704 739 1437 239 45 19 chr9 3144186 3144648 -114717979 - MLT1E2 LTR MaLR 0 626 156 1290 181 4 49 chr9 3146449 3146715 -114715912 + AluJb SINE Alu 1 254 -58 358 236 55 0 chr9 3146884 3147011 -114715616 - L1ME4a LINE L1 0 6121 5988 1797 68 8 0 chr9 3147020 3147257 -114715370 - L1PA7 LINE L1 0 6154 5916 2177 106 6 13 chr9 3147273 3147585 -114715042 - AluSx SINE Alu -2 310 1 347 335 107 26 chr9 3147661 3148074 -114714553 - L1ME4a LINE L1 -331 5790 5317 1595 166 76 3 chr9 3148074 3148364 -114714263 - AluJb SINE Alu -1 311 1 347 335 107 26 chr9 3148364 3148433 -114714194 - L1ME4a LINE L1 -804 5317 5255 25 51 0 0 chr9 3148495 3148534 -114714093 + AT_rich Low_complexity Low_complexity 1 39 0 191 182 250 0 chr9 3148823 3148867 -114713760 - L2 LINE L2 -1 3271 3217 2390 95 0 7 chr9 3149524 3149829 -114712798 + AluSp SINE Alu 1 303 -10 211 260 87 39 chr9 3149894 3149998 -114712629 - MIR SINE MIR -56 206 98 1677 199 52 13 chr9 3150192 3150573 -114712054 + MER57A LTR ERV1 8 403 0 320 181 97 42 chr9 3150574 3150646 -114711981 + MIR SINE MIR 45 120 -142 198 0 0 0 chr9 3151052 3151074 -114711553 + (T)n Simple_repeat Simple_repeat 1 22 0 668 238 10 10 chr9 3151543 3151745 -114710882 + L1MDb LINE L1 1065 1266 -5143 879 287 75 41 chr9 3151950 3152442 -114710185 - MLT1H LTR MaLR -40 509 1 282 307 0 13 chr9 3152515 3152590 -114710037 - MIR SINE MIR -85 123 50 2637 182 22 55 chr9 3152902 3153480 -114709147 - L1MB5 LINE L1 -10 6164 5606 229 388 10 0 chr9 3153763 3153866 -114708761 - MIR SINE MIR -67 141 38 797 159 28 14 chr9 3153985 3154130 -114708497 + FRAM SINE Alu 19 165 -11 610 251 94 30 chr9 3154352 3154555 -114708072 - MIR SINE MIR -2 260 45 322 157 0 0 chr9 3154548 3154599 -114708028 - MER5A DNA MER1_type -138 51 1 * 427 322 6 23 chr9 3155979 3156153 -114706474 + MER5B DNA MER1_type 2 172 -6 1409 202 112 30 chr9 3156277 3156563 -114706064 - MSTD LTR MaLR 0 396 72 2108 131 3 7 chr9 3156563 3156868 -114705759 - AluSq SINE Alu -9 304 1 1409 202 112 30 chr9 3156868 3156947 -114705680 - MSTD LTR MaLR -324 72 1 316 298 106 13 chr9 3157650 3157801 -114704826 - L1ME4a LINE L1 -202 5919 5755 239 294 228 0 chr9 3157805 3157897 -114704730 + MER5A DNA MER1_type 69 181 -8 2213 130 0 3 chr9 3158053 3158361 -114704266 - AluSx SINE Alu -5 307 1 306 222 193 19 chr9 3158408 3158615 -114704012 - L1ME4a LINE L1 -36 6085 5843 184 365 40 0 chr9 3158649 3158723 -114703904 - L3 LINE CR1 -1043 534 458 351 404 13 30 chr9 3158794 3159024 -114703603 - L3 LINE CR1 -1309 268 43 613 317 69 29 chr9 3159048 3159395 -114703232 - MARNA DNA Mariner -201 385 25 1462 219 38 27 chr9 3159403 3159769 -114702858 - MLT1A2 LTR MaLR -4 370 1 216 0 0 0 chr9 3159960 3159984 -114702643 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr9 3160076 3160099 -114702528 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr9 3160311 3160335 -114702292 + (T)n Simple_repeat Simple_repeat 1 24 0 1924 68 0 16 chr9 3161482 3161730 -114700897 - AluY SINE Alu -5 306 63 247 338 58 32 chr9 3161865 3162019 -114700608 + L2 LINE L2 3149 3306 -7 549 245 23 14 chr9 3162049 3162323 -114700304 + CT-rich Low_complexity Low_complexity 1 276 0 573 315 91 4 chr9 3163862 3164103 -114698524 - MLT1K LTR MaLR -172 416 155 434 292 8 8 chr9 3164673 3164803 -114697824 - MER94 DNA DNA -3 131 2 23 68 0 0 chr9 3165119 3165163 -114697464 + AT_rich Low_complexity Low_complexity 1 44 0 413 270 50 87 chr9 3166320 3166561 -114696066 + MER102a DNA MER1_type 92 323 -7 9759 25 1 0 chr9 3167418 3168580 -114694047 - L1P LINE L1 -814 5332 4170 277 403 8 0 chr9 3168914 3169043 -114693584 - MER89-int LTR ERV1 -338 6463 6334 2280 217 149 23 chr9 3169355 3170686 -114691941 - L1ME2 LINE L1 -125 6108 4605 548 284 34 0 chr9 3170715 3170919 -114691708 - L1ME2 LINE L1 -2046 4169 3959 1867 264 49 3 chr9 3170954 3171693 -114690934 - L1ME2 LINE L1 -2555 3660 2888 428 334 32 83 chr9 3171679 3172362 -114690265 - L1ME2 LINE L1 -5582 814 167 * 1608 255 31 16 chr9 3173057 3173508 -114689119 - LTR40c LTR ERVL -7 458 1 196 336 91 51 chr9 3175191 3175444 -114687183 - L2 LINE L2 -339 2975 2713 377 229 28 28 chr9 3175496 3175605 -114687022 - MIR SINE MIR -70 192 84 2326 234 41 53 chr9 3175838 3176669 -114685958 - L1MC4 LINE L1 -7 8035 7215 2028 221 94 52 chr9 3176648 3177422 -114685205 - L1M4 LINE L1 -1775 4371 3565 * 2019 244 61 23 chr9 3177452 3178191 -114684436 - L1M4 LINE L1 -2875 3271 2505 294 151 0 0 chr9 3178473 3178526 -114684101 + L1MC5 LINE L1 7724 7776 -185 734 202 12 40 chr9 3179089 3179262 -114683365 + AluJo SINE Alu 1 168 -144 368 103 116 0 chr9 3179263 3179684 -114682943 + (TA)n Simple_repeat Simple_repeat 1 469 0 1779 156 3 33 chr9 3179965 3180266 -114682361 - AluJb SINE Alu -20 292 1 1801 181 79 23 chr9 3180295 3180825 -114681802 - MLT2A2 LTR ERVL 0 554 1 202 233 0 0 chr9 3180830 3180873 -114681754 + MIR SINE MIR 196 238 -24 237 65 0 0 chr9 3180914 3180945 -114681682 + (TCC)n Simple_repeat Simple_repeat 3 33 0 321 343 56 0 chr9 3181019 3181127 -114681500 - MER91C DNA MER1_type 0 140 27 868 107 0 0 chr9 3182591 3182713 -114679914 - FRAM SINE Alu -1 175 54 351 320 109 6 chr9 3182721 3182896 -114679731 - MIR SINE MIR -62 200 8 1769 184 27 15 chr9 3182911 3183248 -114679379 + MER58B DNA MER1_type 1 341 0 299 378 6 47 chr9 3184126 3184298 -114678329 + MIR3 SINE MIR 1 145 -63 935 274 87 21 chr9 3184603 3184983 -114677644 - MLT1I LTR MaLR -3 406 2 457 268 87 100 chr9 3185168 3185698 -114676929 + L1ME4a LINE L1 5485 6007 -114 181 240 40 0 chr9 3185863 3185913 -114676714 + L2 LINE L2 3261 3312 -1 512 176 84 59 chr9 3186460 3186579 -114676048 + MER91B DNA MER1_type 1 122 -68 310 245 20 69 chr9 3186603 3186705 -114675922 + MER91B DNA MER1_type 93 189 -1 262 239 30 0 chr9 3186754 3186821 -114675806 - Charlie8 DNA MER1_type -1 2416 2348 216 272 0 99 chr9 3187187 3187268 -114675359 + L2 LINE L2 3239 3311 -2 1060 168 10 15 chr9 3187298 3187500 -114675127 + MER41B LTR ERV1 349 549 -86 210 37 0 0 chr9 3187785 3187812 -114674815 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 337 340 51 9 chr9 3188269 3188484 -114674143 + L1P LINE L1 3509 3732 -2414 201 412 0 8 chr9 3188487 3188606 -114674021 + MIR SINE MIR 41 158 -104 779 216 59 54 chr9 3188668 3188835 -114673792 - MIR SINE MIR -23 239 69 1818 189 55 3 chr9 3188835 3189178 -114673449 + MLT1A1 LTR MaLR 1 361 -4 779 216 59 54 chr9 3189178 3189232 -114673395 - MIR SINE MIR -193 69 17 326 298 127 72 chr9 3189259 3189572 -114673055 + L1ME LINE L1 3862 4156 -1990 2136 174 61 2 chr9 3189572 3189980 -114672647 - MSTB1 LTR MaLR 0 432 1 326 298 127 72 chr9 3189980 3190281 -114672346 + L1ME LINE L1 4156 4510 -1636 588 283 60 57 chr9 3190802 3191116 -114671511 + MLT1J LTR MaLR 197 511 0 5092 73 16 0 chr9 3191489 3192176 -114670451 - L1PA10 LINE L1 -186 5982 5285 479 304 68 34 chr9 3192194 3192520 -114670107 + L1ME LINE L1 5484 5820 -301 2510 152 8 46 chr9 3193001 3193482 -114669145 + L1MA10 LINE L1 5740 6202 -132 303 339 99 9 chr9 3193697 3193918 -114668709 + MIR SINE MIR 6 246 -16 246 207 37 37 chr9 3194002 3194084 -114668543 - MER103 DNA DNA -82 84 3 1732 191 31 6 chr9 3194704 3195060 -114667567 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr9 3195071 3195095 -114667532 + AT_rich Low_complexity Low_complexity 1 24 0 547 326 82 10 chr9 3195705 3195901 -114666726 - MIR SINE MIR -33 229 20 1258 113 21 0 chr9 3196778 3196972 -114665655 - L1PB3 LINE L1 0 6154 5957 2869 9 0 0 chr9 3197356 3197671 -114664956 + AluYb8 SINE Alu 1 315 -3 426 253 7 20 chr9 3197683 3197829 -114664798 - L1MC4a LINE L1 -1913 5895 5752 433 280 19 32 chr9 3197902 3198180 -114664447 - L1MEd LINE L1 -4862 1257 1069 455 297 57 29 chr9 3198275 3198521 -114664106 + L1MEd LINE L1 971 1223 -4896 12450 205 41 13 chr9 3198970 3199010 -114663617 - L1MB1 LINE L1 -209 6195 6158 624 193 0 0 chr9 3199010 3199145 -114663482 - L1MB1 LINE L1 -1 6167 6033 12450 205 41 13 chr9 3199145 3202991 -114659636 - L1MB1 LINE L1 -246 6158 2190 197 284 116 0 chr9 3203642 3203731 -114658896 + MIR SINE MIR 52 148 -62 21 36 0 0 chr9 3204739 3204767 -114657860 + AT_rich Low_complexity Low_complexity 1 28 0 2710 61 3 0 chr9 3204810 3205154 -114657473 - L1PA7 LINE L1 0 6154 5810 1932 58 0 0 chr9 3205154 3205396 -114657231 + L1PA7 LINE L1 5572 5813 -341 336 306 27 20 chr9 3206695 3206842 -114655785 + L1ME4a LINE L1 5965 6112 -9 185 0 0 39 chr9 3207169 3207195 -114655432 + (TTA)n Simple_repeat Simple_repeat 3 27 0 517 324 117 28 chr9 3207541 3208001 -114654626 - L1M4 LINE L1 -1586 4560 4060 23 54 0 0 chr9 3208665 3208702 -114653925 + AT_rich Low_complexity Low_complexity 1 37 0 340 238 105 70 chr9 3209640 3209709 -114652918 + MIR SINE MIR 76 141 -121 339 25 0 0 chr9 3209709 3209749 -114652878 + (ATG)n Simple_repeat Simple_repeat 3 42 0 340 238 105 70 chr9 3209749 3209822 -114652805 + MIR SINE MIR 141 223 -39 284 315 15 54 chr9 3210734 3210864 -114651763 - MIR3 SINE MIR -11 197 73 503 130 0 0 chr9 3210999 3211076 -114651551 - MADE1 DNA Mariner -3 77 1 561 282 17 35 chr9 3212004 3212178 -114650449 - MER20B DNA MER1_type -609 174 4 621 293 25 20 chr9 3212996 3213194 -114649433 - MIR SINE MIR -56 206 8 219 262 33 16 chr9 3213326 3213387 -114649240 - MIR SINE MIR -115 147 86 29 0 0 0 chr9 3213468 3213497 -114649130 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr9 3213667 3213687 -114648940 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 345 140 0 0 chr9 3214837 3214894 -114647733 + (CA)n Simple_repeat Simple_repeat 2 58 0 716 239 177 5 chr9 3214928 3215137 -114647490 - MIR SINE MIR 0 262 18 337 300 134 89 chr9 3215134 3215603 -114647024 + L2 LINE L2 2770 3255 -17 * 336 281 22 11 chr9 3216857 3216946 -114645681 + MER91A DNA MER1_type 2 91 -105 2102 177 28 23 chr9 3217646 3219231 -114643396 + L1MC3 LINE L1 4731 7765 -20 1957 119 0 41 chr9 3219231 3219552 -114643075 - AluSx SINE Alu 0 309 1 2102 177 28 23 chr9 3219552 3219574 -114643053 + L1MC3 LINE L1 7765 7785 0 525 267 99 15 chr9 3219776 3220038 -114642589 + HAL1 LINE L1 1398 1681 -826 35 0 0 0 chr9 3220188 3220223 -114642404 + AT_rich Low_complexity Low_complexity 1 35 0 1325 178 114 11 chr9 3221831 3222112 -114640515 + AluSx SINE Alu 2 311 -1 1003 289 16 9 chr9 3223568 3223890 -114638737 + L1MCc LINE L1 130 453 -5970 388 246 48 60 chr9 3224372 3224539 -114638088 + L1MCc LINE L1 795 959 -5464 1060 279 73 26 chr9 3224603 3225091 -114637536 + L1MCc LINE L1 1339 1803 -5319 2172 86 58 0 chr9 3225091 3225382 -114637245 + AluSg SINE Alu 1 308 -2 1060 279 73 26 chr9 3225382 3225838 -114636789 + L1MCc LINE L1 1803 2518 -4604 28895 102 13 3 chr9 3225888 3231021 -114631606 - L1PA7 LINE L1 0 6469 1288 4747 17 0 0 chr9 3231025 3231567 -114631060 - L1PA2 LINE L1 0 6155 5614 4669 34 2 0 chr9 3231567 3232134 -114630493 + L1P LINE L1 4686 5253 -893 * 9008 98 32 5 chr9 3232127 3233391 -114629236 - L1PA7 LINE L1 -5161 1300 2 1819 169 0 19 chr9 3233573 3233881 -114628746 - AluJo SINE Alu -10 302 1 2893 236 64 26 chr9 3233925 3234795 -114627832 + L1MEc LINE L1 40 942 -5454 701 318 32 53 chr9 3234830 3235208 -114627419 - MLT1L LTR MaLR -123 492 123 2533 239 28 11 chr9 3235307 3235850 -114626777 + REP3 LTR ERV 11 562 0 644 264 70 0 chr9 3235977 3236178 -114626449 + MER58C DNA MER1_type 1 215 0 231 361 139 0 chr9 3236248 3236356 -114626271 - MIR SINE MIR -112 150 28 252 59 0 0 chr9 3236527 3236561 -114626066 + (GAAAA)n Simple_repeat Simple_repeat 1 34 0 211 245 75 0 chr9 3236791 3236844 -114625783 - L2 LINE L2 -4 3268 3212 320 268 145 41 chr9 3236980 3237249 -114625378 - MER102a DNA MER1_type 0 330 34 729 117 0 83 chr9 3237389 3237534 -114625093 - L1MD1 LINE L1 -14 6228 6096 213 227 0 0 chr9 3237672 3237716 -114624911 + (TATATG)n Simple_repeat Simple_repeat 6 49 0 606 228 42 5 chr9 3237727 3237916 -114624711 - L1MD1 LINE L1 -1985 5823 5628 874 298 80 35 chr9 3237931 3238723 -114623904 - L1MD1 LINE L1 -748 5398 4686 183 80 0 0 chr9 3238723 3238748 -114623879 + (CCCCCA)n Simple_repeat Simple_repeat 4 28 0 874 298 80 35 chr9 3238748 3239140 -114623487 - L1MD1 LINE L1 -1460 4686 4313 3577 126 24 0 chr9 3239152 3239730 -114622897 - L1MA5A LINE L1 -3 6294 5703 1522 196 37 0 chr9 3239730 3240021 -114622606 + L1PB4 LINE L1 5837 6143 -13 2967 149 18 9 chr9 3240037 3240592 -114622035 - L1MA5A LINE L1 -587 5710 5144 4076 129 25 71 chr9 3240592 3241414 -114621213 - LTR1 LTR ERV1 0 785 1 2967 149 18 9 chr9 3241414 3241789 -114620838 - L1MA5A LINE L1 -1153 5144 4774 327 297 25 0 chr9 3241942 3242060 -114620567 - L1MD1 LINE L1 -1987 4159 4039 1785 189 88 43 chr9 3242482 3242777 -114619850 - Charlie4a DNA MER1_type -1453 508 183 3827 14 0 0 chr9 3242777 3243216 -114619411 + L1PA2 LINE L1 5717 6155 0 1785 189 88 43 chr9 3243216 3243386 -114619241 - Charlie4a DNA MER1_type -1778 183 22 1769 163 3 3 chr9 3244605 3244930 -114617697 - AluSx SINE Alu 0 325 1 1068 202 79 128 chr9 3245326 3245394 -114617233 - MLT1D LTR MaLR -1 504 434 2354 104 0 0 chr9 3245394 3245701 -114616926 + AluSg SINE Alu 3 309 -1 1068 202 79 128 chr9 3245701 3246162 -114616465 - MLT1D LTR MaLR -71 434 1 2977 278 109 28 chr9 3247084 3249198 -114613429 - L1MC4a LINE L1 -758 5388 3850 311 88 0 18 chr9 3249198 3249255 -114613372 + (TA)n Simple_repeat Simple_repeat 1 56 0 2977 278 109 28 chr9 3249255 3250104 -114612523 - L1MC4a LINE L1 -2296 3850 3071 399 21 0 0 chr9 3250328 3250376 -114612251 + (CA)n Simple_repeat Simple_repeat 2 49 0 267 293 75 43 chr9 3250442 3250630 -114611997 - HAL1b LINE L1 -929 419 226 26 30 0 0 chr9 3250753 3250786 -114611841 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr9 3251270 3251300 -114611327 + (TTG)n Simple_repeat Simple_repeat 2 31 0 237 385 54 0 chr9 3253572 3253702 -114608925 + MIR3 SINE MIR 2 138 -70 194 276 163 0 chr9 3253964 3254062 -114608565 + MIR SINE MIR 8 121 -141 307 179 0 24 chr9 3254468 3254552 -114608075 + CT-rich Low_complexity Low_complexity 4 85 0 468 231 23 62 chr9 3255162 3255215 -114607412 + L2 LINE L2 3189 3242 -71 1378 250 82 52 chr9 3255215 3255739 -114606888 + MLT1F LTR MaLR 3 542 0 468 231 23 62 chr9 3255739 3255815 -114606812 + L2 LINE L2 3242 3313 0 23 0 0 0 chr9 3256378 3256401 -114606226 + AT_rich Low_complexity Low_complexity 1 23 0 243 266 78 101 chr9 3256417 3256635 -114605992 - L2 LINE L2 -174 3139 2927 345 24 0 0 chr9 3256713 3256755 -114605872 + (CA)n Simple_repeat Simple_repeat 1 42 0 224 228 0 0 chr9 3256923 3256980 -114605647 + T-rich Low_complexity Low_complexity 1 57 0 290 293 81 10 chr9 3256982 3257081 -114605546 - MIR SINE MIR -87 175 70 1123 176 27 5 chr9 3258037 3258259 -114604368 + L1MA9 LINE L1 6049 6275 -37 2128 99 3 11 chr9 3258574 3258885 -114603742 - AluSq SINE Alu 0 311 3 304 232 141 40 chr9 3259524 3259623 -114603004 + MER20B DNA MER1_type 70 178 -605 641 190 25 0 chr9 3259925 3260046 -114602581 - MLT2D LTR ERVL -274 140 17 882 220 70 0 chr9 3260073 3260273 -114602354 + MLT1H1 LTR MaLR 342 555 0 966 305 90 11 chr9 3260284 3260717 -114601910 + L2 LINE L2 2842 3308 -5 3258 151 36 31 chr9 3261368 3261923 -114600704 + MER74A LTR ERVL 1 558 0 304 281 12 0 chr9 3262047 3262129 -114600498 - L2 LINE L2 -4 3268 3186 1583 213 0 3 chr9 3262511 3262798 -114599829 + AluJo SINE Alu 1 286 -26 659 315 84 4 chr9 3262802 3263040 -114599587 - MIR SINE MIR 0 262 6 339 213 0 50 chr9 3264015 3264095 -114598532 - L2 LINE L2 -5 3308 3233 223 311 25 8 chr9 3265011 3265130 -114597497 + (CACG)n Simple_repeat Simple_repeat 1 121 0 425 193 211 18 chr9 3266833 3266947 -114595680 - MER82 DNA MER2_type -504 149 14 1140 244 136 40 chr9 3267474 3267924 -114594703 - MLT1D LTR MaLR 0 505 13 2245 109 0 10 chr9 3268220 3268532 -114594095 - AluY SINE Alu 0 311 3 249 146 0 0 chr9 3268599 3268647 -114593980 + (GA)n Simple_repeat Simple_repeat 1 48 0 509 254 204 33 chr9 3268678 3268953 -114593674 + Charlie2 DNA MER1_type 1 322 -2540 611 199 121 0 chr9 3268960 3269101 -114593526 + Charlie2 DNA MER1_type 1858 2015 -847 743 244 120 14 chr9 3269188 3269606 -114593021 + Charlie2 DNA MER1_type 2334 2795 -67 2244 116 6 30 chr9 3269633 3269994 -114592633 + MER50 LTR ERV1 1 352 -382 518 264 156 64 chr9 3270006 3270332 -114592295 - LTR18A LTR ERVL -1 356 1 1840 143 39 34 chr9 3270332 3270689 -114591938 + MER50 LTR ERV1 347 705 -29 749 233 25 6 chr9 3272645 3272804 -114589823 - MER5A DNA MER1_type -3 186 25 1450 172 31 151 chr9 3272934 3273359 -114589268 + MLT1A2 LTR MaLR 1 374 0 185 359 39 19 chr9 3273626 3273729 -114588898 + MIR SINE MIR 104 208 -54 321 301 141 47 chr9 3273736 3273992 -114588635 + L2 LINE L2 3032 3311 -2 2056 107 0 14 chr9 3274313 3274603 -114588024 + AluSc SINE Alu 1 286 -23 243 217 36 48 chr9 3275453 3275536 -114587091 + MIR SINE MIR 104 185 -77 240 231 19 0 chr9 3276270 3276322 -114586305 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 253 298 118 8 chr9 3276327 3276554 -114586073 + L1MC4a LINE L1 5389 5640 -522 505 195 190 36 chr9 3277059 3277254 -114585373 + L1MC4a LINE L1 5674 5898 -1910 386 171 0 85 chr9 3277434 3277516 -114585111 - MER5B DNA MER1_type 0 178 104 249 290 176 51 chr9 3277725 3277901 -114584726 - MIR SINE MIR -45 217 20 337 261 76 8 chr9 3278839 3278958 -114583669 - L1ME4a LINE L1 -53 6068 5942 2585 36 3 7 chr9 3278963 3279268 -114583359 + AluY SINE Alu 1 304 -7 181 292 77 15 chr9 3279638 3279703 -114582924 - L3 LINE CR1 -1297 280 212 756 278 106 16 chr9 3280030 3280350 -114582277 - L2 LINE L2 -7 3306 2958 1504 215 7 7 chr9 3280575 3280863 -114581764 + AluJo SINE Alu 3 290 -22 264 30 0 0 chr9 3281036 3281069 -114581558 + (TG)n Simple_repeat Simple_repeat 2 34 0 715 236 0 8 chr9 3281268 3281395 -114581232 + FLAM_A SINE Alu 3 128 -5 2264 134 85 15 chr9 3283101 3283655 -114578972 - MER39 LTR ERV1 0 707 32 398 284 113 0 chr9 3283701 3283842 -114578785 - MIR SINE MIR -48 214 58 286 214 14 14 chr9 3284153 3284223 -114578404 + MIR SINE MIR 129 198 -64 544 276 46 46 chr9 3285522 3285565 -114577062 - MIR SINE MIR -64 198 156 1541 171 100 10 chr9 3285565 3285875 -114576752 - MER44D DNA MER2_type 0 609 2 544 276 46 46 chr9 3285875 3286027 -114576600 - MIR SINE MIR -105 157 3 211 182 0 0 chr9 3286075 3286108 -114576519 + polypurine Low_complexity Low_complexity 4 36 0 242 262 56 19 chr9 3286477 3286584 -114576043 + L1ME LINE L1 5314 5424 -2384 1307 211 57 80 chr9 3286588 3286836 -114575791 - MLT1C LTR MaLR -5 462 229 378 0 0 0 chr9 3286836 3286878 -114575749 + (TG)n Simple_repeat Simple_repeat 2 43 0 1307 211 57 80 chr9 3286878 3287102 -114575525 - MLT1C LTR MaLR -238 229 1 2313 118 0 0 chr9 3287375 3287680 -114574947 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr9 3287870 3287891 -114574736 + AT_rich Low_complexity Low_complexity 1 21 0 1942 167 139 54 chr9 3288183 3288411 -114574216 + MER39 LTR ERV1 4 211 -496 2281 169 39 10 chr9 3288411 3288796 -114573831 + MSTD LTR MaLR 1 396 0 1942 167 139 54 chr9 3288796 3289183 -114573444 + MER39 LTR ERV1 211 707 0 829 288 99 20 chr9 3290349 3290703 -114571924 - L1ME3A LINE L1 -60 6110 5729 246 291 55 18 chr9 3291167 3291277 -114571350 + L1ME LINE L1 5532 5645 -476 243 374 61 8 chr9 3291371 3291502 -114571125 - L2 LINE L2 -1 3271 3134 1516 185 10 17 chr9 3291584 3291876 -114570751 - AluJo SINE Alu -18 294 5 368 40 20 0 chr9 3291879 3291929 -114570698 + (TTTA)n Simple_repeat Simple_repeat 1 51 0 524 117 0 0 chr9 3292029 3292106 -114570521 - L1M4 LINE L1 -863 5283 5207 1527 276 29 40 chr9 3292106 3292624 -114570003 - LTR40a LTR ERVL 0 519 8 371 242 32 24 chr9 3292634 3292758 -114569869 - L1ME3A LINE L1 -940 5206 5082 2730 192 49 48 chr9 3292762 3292780 -114569847 - L1ME3A LINE L1 -1022 5124 5108 2359 96 3 0 chr9 3292780 3293081 -114569546 - AluSp SINE Alu -11 302 1 2730 192 49 48 chr9 3293081 3293797 -114568830 - L1ME3A LINE L1 -1038 5108 4389 317 194 216 37 chr9 3293799 3293933 -114568694 - L1ME3A LINE L1 -3851 2295 2138 2061 128 7 3 chr9 3294415 3294720 -114567907 - AluSx SINE Alu -6 306 1 3985 129 48 12 chr9 3296028 3296503 -114566124 + L1MA6 LINE L1 5633 6138 -162 2631 168 12 16 chr9 3296503 3296931 -114565696 + MSTB LTR MaLR 1 426 0 3985 129 48 12 chr9 3296931 3297100 -114565527 + L1MA6 LINE L1 6138 6300 0 346 220 119 90 chr9 3297185 3297362 -114565265 - Charlie8 DNA MER1_type -2164 253 72 2259 99 3 0 chr9 3297512 3297806 -114564821 + AluSx SINE Alu 1 295 -17 324 284 10 49 chr9 3298433 3298535 -114564092 - MIR SINE MIR -161 101 4 244 322 8 50 chr9 3298567 3298688 -114563939 - MIR SINE MIR -63 145 30 986 291 76 46 chr9 3298791 3299738 -114562889 + MERVL LTR ERVL 4156 5209 -555 272 241 76 0 chr9 3300001 3300080 -114562547 + LTR33 LTR ERVL 419 503 -18 2193 113 10 0 chr9 3301208 3301510 -114561117 - AluSg SINE Alu -4 306 2 333 0 0 0 chr9 3301650 3301687 -114560940 + (TA)n Simple_repeat Simple_repeat 2 38 0 448 195 98 32 chr9 3301709 3301832 -114560795 + L1ME1 LINE L1 6036 6166 0 27 0 0 0 chr9 3302405 3302432 -114560195 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr9 3303384 3303407 -114559220 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr9 3309780 3309806 -114552821 + AT_rich Low_complexity Low_complexity 1 26 0 480 273 101 38 chr9 3313789 3313998 -114548629 + MARNA DNA Mariner 11 232 -354 509 296 94 31 chr9 3314072 3314295 -114548332 + MARNA DNA Mariner 328 564 -22 316 122 0 0 chr9 3314307 3314356 -114548271 - MADE1 DNA Mariner -31 49 1 298 241 0 0 chr9 3315347 3315405 -114547222 - L2 LINE L2 0 3313 3256 1696 104 120 12 chr9 3315724 3315978 -114546649 + AluSg SINE Alu 1 283 -23 351 65 0 0 chr9 3315978 3316024 -114546603 + (CAAG)n Simple_repeat Simple_repeat 2 47 0 468 321 92 22 chr9 3316276 3316547 -114546080 + L2 LINE L2 3024 3313 0 272 186 10 29 chr9 3316714 3316816 -114545811 + GA-rich Low_complexity Low_complexity 1 100 0 263 233 0 17 chr9 3317749 3317809 -114544818 + MIR SINE MIR 203 261 -1 811 238 23 0 chr9 3318126 3318298 -114544329 - MER58A DNA MER1_type -1 223 48 1762 152 11 11 chr9 3318299 3318610 -114544017 + AluJb SINE Alu 1 311 0 330 261 0 0 chr9 3318639 3318704 -114543923 - MER58A DNA MER1_type -42 65 1 1642 190 78 88 chr9 3319397 3319896 -114542731 - MLT1D LTR MaLR -11 494 1 385 322 38 43 chr9 3321535 3321746 -114540881 - MIR SINE MIR -6 256 47 234 143 0 24 chr9 3321781 3321823 -114540804 + MIR SINE MIR 34 74 -188 814 96 0 0 chr9 3321829 3321933 -114540694 + AluJb SINE Alu 197 300 -12 195 303 210 8 chr9 3321934 3322053 -114540574 + MIR SINE MIR 82 224 -38 1899 71 8 38 chr9 3322691 3322957 -114539670 + AluSp SINE Alu 44 301 -12 1680 258 131 28 chr9 3323627 3324250 -114538377 + MER115 DNA AcHobo 5 4029 -2 379 342 114 5 chr9 3326044 3326237 -114536390 + MIR SINE MIR 32 245 -17 27 81 0 0 chr9 3326845 3326907 -114535720 + AT_rich Low_complexity Low_complexity 1 62 0 39 22 0 0 chr9 3327191 3327237 -114535390 + AT_rich Low_complexity Low_complexity 1 46 0 743 254 43 70 chr9 3327805 3327932 -114534695 + MIR SINE MIR 8 126 -136 2286 98 0 13 chr9 3327932 3328248 -114534379 - AluSx SINE Alu 0 312 1 743 254 43 70 chr9 3328248 3328376 -114534251 + MIR SINE MIR 126 256 -6 583 270 41 130 chr9 3328502 3328894 -114533733 + L2 LINE L2 2914 3270 -2 312 327 36 18 chr9 3328902 3329012 -114533615 - MIR SINE MIR -67 141 30 381 316 85 32 chr9 3329133 3329470 -114533157 - L2 LINE L2 -225 3047 2682 248 314 25 17 chr9 3329488 3329606 -114533021 - L2 LINE L2 -797 2517 2399 641 239 97 85 chr9 3331284 3331531 -114531096 + MIR SINE MIR 12 261 -1 23 68 0 0 chr9 3332826 3332870 -114529757 + AT_rich Low_complexity Low_complexity 1 44 0 225 65 0 0 chr9 3332971 3333002 -114529625 + (TG)n Simple_repeat Simple_repeat 2 32 0 188 353 77 47 chr9 3333267 3333437 -114529190 + MIR SINE MIR 32 206 -56 24 0 0 0 chr9 3333881 3333905 -114528722 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr9 3334250 3334282 -114528345 + AT_rich Low_complexity Low_complexity 1 32 0 644 265 127 38 chr9 3334289 3334778 -114527849 + L1ME4a LINE L1 5361 5894 -227 508 235 23 65 chr9 3334932 3335149 -114527478 + L1ME4a LINE L1 5676 5883 -238 1421 173 57 14 chr9 3335294 3335577 -114527050 - AluJo SINE Alu -17 295 1 24 0 0 0 chr9 3335618 3335642 -114526985 + AT_rich Low_complexity Low_complexity 1 24 0 2095 79 4 0 chr9 3335782 3336049 -114526578 - AluSp SINE Alu -4 309 42 917 309 91 9 chr9 3336162 3336682 -114525945 - L2 LINE L2 -3 3310 2738 1212 106 0 0 chr9 3338484 3338645 -114523982 - AluY SINE Alu -16 295 135 210 73 0 98 chr9 3339844 3339885 -114522742 + MER5B DNA MER1_type 25 61 -117 2296 74 0 13 chr9 3339914 3340212 -114522415 - AluY SINE Alu -17 294 1 229 337 10 10 chr9 3340230 3340331 -114522296 - MER5B DNA MER1_type -72 106 6 846 260 0 6 chr9 3340371 3340544 -114522083 - MER5A DNA MER1_type -16 173 2 213 336 136 9 chr9 3342015 3342125 -114520502 + MIR3 SINE MIR 31 154 -54 250 296 178 46 chr9 3342342 3342494 -114520133 + L2 LINE L2 2247 2418 -896 286 205 47 24 chr9 3342712 3342839 -114519788 + (TA)n Simple_repeat Simple_repeat 2 131 0 321 272 73 32 chr9 3342842 3343088 -114519539 - L1ME4a LINE L1 -161 5960 5705 201 171 0 0 chr9 3344382 3344417 -114518210 + (TA)n Simple_repeat Simple_repeat 2 36 0 256 191 43 0 chr9 3344778 3344872 -114517755 + (TA)n Simple_repeat Simple_repeat 2 99 0 4580 189 18 9 chr9 3345062 3346137 -114516490 - L1MB8 LINE L1 0 6178 5102 379 303 45 30 chr9 3346504 3346636 -114515991 - MIR SINE MIR -128 134 1 1204 282 80 16 chr9 3347629 3348115 -114514512 + LTR33 LTR ERVL 1 517 -4 26 30 0 0 chr9 3348220 3348253 -114514374 + AT_rich Low_complexity Low_complexity 1 33 0 412 289 0 0 chr9 3348461 3348565 -114514062 - MIR SINE MIR -11 251 148 256 196 0 0 chr9 3348979 3349030 -114513597 + MER3 DNA MER1_type 1 51 -158 * 803 237 41 0 chr9 3349027 3349221 -114513406 + MER3 DNA MER1_type 7 208 -1 22 35 0 0 chr9 3351880 3351909 -114510718 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr9 3352241 3352262 -114510365 + AT_rich Low_complexity Low_complexity 1 21 0 767 57 33 8 chr9 3353992 3354114 -114508513 + (GAAA)n Simple_repeat Simple_repeat 2 126 0 593 193 18 18 chr9 3355359 3355525 -114507102 + CT-rich Low_complexity Low_complexity 3 168 0 2277 98 0 3 chr9 3357528 3357825 -114504802 + AluSx SINE Alu 5 300 -12 249 167 0 0 chr9 3358780 3358834 -114503793 + (TA)n Simple_repeat Simple_repeat 2 55 0 587 285 54 51 chr9 3358853 3359204 -114503423 - L1MC4a LINE L1 -157 5964 5610 210 150 0 0 chr9 3360596 3360636 -114501991 + (CA)n Simple_repeat Simple_repeat 1 40 0 30 59 0 0 chr9 3360850 3360901 -114501726 + AT_rich Low_complexity Low_complexity 1 51 0 275 246 85 0 chr9 3362274 3362392 -114500235 - L1ME4a LINE L1 -30 6091 5964 329 349 48 27 chr9 3364602 3364748 -114497879 + MER5B DNA MER1_type 1 149 -29 215 150 50 100 chr9 3365000 3365060 -114497567 - L2 LINE L2 -8 3305 3249 465 287 0 9 chr9 3366459 3366574 -114496053 - L2 LINE L2 0 3272 3159 392 252 29 10 chr9 3367281 3367384 -114495243 - MIR SINE MIR -56 206 102 504 244 78 0 chr9 3367880 3367995 -114494632 + MIR3 SINE MIR 81 204 -4 24 0 0 0 chr9 3370271 3370295 -114492332 + AT_rich Low_complexity Low_complexity 1 24 0 227 224 86 0 chr9 3371382 3371440 -114491187 + MIR SINE MIR 61 123 -85 356 125 16 0 chr9 3371532 3371596 -114491031 + (TCCA)n Simple_repeat Simple_repeat 4 68 0 23 0 0 0 chr9 3373143 3373166 -114489461 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr9 3373231 3373259 -114489368 + AT_rich Low_complexity Low_complexity 1 28 0 263 200 20 0 chr9 3374765 3374815 -114487812 + MER34 LTR ERV1 1 51 -491 1491 175 69 102 chr9 3374826 3375025 -114487602 + MER39 LTR ERV1 232 436 -271 1972 107 0 24 chr9 3375025 3375379 -114487248 + AluSx SINE Alu 1 347 0 1491 175 69 102 chr9 3375379 3375670 -114486957 + MER39 LTR ERV1 436 707 0 1949 101 14 22 chr9 3375757 3376034 -114486593 + AluSc SINE Alu 35 309 0 222 91 0 0 chr9 3376685 3376718 -114485909 + (TG)n Simple_repeat Simple_repeat 2 34 0 304 341 30 22 chr9 3378346 3378481 -114484146 - L2 LINE L2 -19 3294 3159 24 32 0 0 chr9 3378547 3378578 -114484049 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr9 3379853 3379875 -114482752 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr9 3380111 3380140 -114482487 + AT_rich Low_complexity Low_complexity 1 29 0 207 139 0 0 chr9 3380480 3380516 -114482111 + (TA)n Simple_repeat Simple_repeat 1 36 0 33 43 0 0 chr9 3382013 3382060 -114480567 + AT_rich Low_complexity Low_complexity 1 47 0 665 195 0 9 chr9 3382416 3382529 -114480098 - L2 LINE L2 -1 3312 3201 21 36 0 0 chr9 3384394 3384422 -114478205 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr9 3385392 3385415 -114477212 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr9 3386914 3386949 -114475678 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr9 3388172 3388202 -114474425 + AT_rich Low_complexity Low_complexity 1 30 0 2156 106 43 37 chr9 3388435 3388785 -114473842 + THE1B LTR MaLR 11 362 -2 1632 29 0 10 chr9 3390504 3390708 -114471919 + L1PA4 LINE L1 5954 6155 0 2069 138 19 32 chr9 3390822 3391191 -114471436 + THE1B LTR MaLR 1 364 0 197 337 124 72 chr9 3391275 3391468 -114471159 - L2 LINE L2 -555 2759 2557 282 204 0 97 chr9 3394542 3394635 -114467992 - MIR SINE MIR -62 200 117 359 182 15 15 chr9 3395472 3395538 -114467089 + MER5A DNA MER1_type 3 68 -121 1948 119 7 4 chr9 3395547 3395824 -114466803 + AluSx SINE Alu 3 280 -32 667 251 44 35 chr9 3395942 3396145 -114466482 - MER112 DNA MER1_type 0 260 56 240 200 15 62 chr9 3396175 3396240 -114466387 - MER112 DNA MER1_type -175 85 24 630 85 0 30 chr9 3396535 3396636 -114465991 + L1PA5 LINE L1 10 398 -6063 * 38595 68 3 3 chr9 3396621 3402477 -114460150 + L1PA5 LINE L1 612 6469 0 28 0 0 0 chr9 3402477 3402505 -114460122 + AT_rich Low_complexity Low_complexity 1 28 0 658 217 90 6 chr9 3403112 3403278 -114459349 + MER5A DNA MER1_type 5 184 -5 203 371 21 50 chr9 3403640 3403780 -114458847 + L2 LINE L2 3123 3258 -14 1869 138 6 22 chr9 3404213 3404524 -114458103 + AluSx SINE Alu 1 306 -6 244 254 0 0 chr9 3404634 3404689 -114457938 - L1MC4 LINE L1 -1339 6703 6649 387 0 0 0 chr9 3404711 3404754 -114457873 + (TA)n Simple_repeat Simple_repeat 2 44 0 717 299 56 43 chr9 3404770 3404854 -114457773 - L1MC4 LINE L1 -2000 5808 5727 2030 113 14 7 chr9 3404854 3405146 -114457481 - AluSx SINE Alu -18 294 1 717 299 56 43 chr9 3405146 3405456 -114457171 - L1MC4 LINE L1 -2081 5727 5409 303 298 53 40 chr9 3405465 3405693 -114456934 - L1MC4 LINE L1 -818 5328 5098 455 284 100 46 chr9 3405792 3406392 -114456235 - L1MC4 LINE L1 -1207 4939 4284 2173 118 0 3 chr9 3406392 3406689 -114455938 + AluSx SINE Alu 1 296 -16 455 284 100 46 chr9 3406689 3406842 -114455785 - L1MC4 LINE L1 -1862 4284 4141 21 36 0 0 chr9 3407650 3407678 -114454949 + AT_rich Low_complexity Low_complexity 1 28 0 344 226 89 96 chr9 3408429 3408575 -114454052 + L1MC4a LINE L1 5820 5964 -1844 2179 105 0 10 chr9 3408623 3408937 -114453690 + AluSx SINE Alu 1 311 -1 28 0 0 0 chr9 3409330 3409358 -114453269 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr9 3409564 3409593 -114453034 + AT_rich Low_complexity Low_complexity 1 29 0 180 238 0 0 chr9 3410066 3410129 -114452498 + (TA)n Simple_repeat Simple_repeat 1 63 0 2967 84 10 0 chr9 3410275 3410680 -114451947 - L1PA12 LINE L1 -7 6161 5753 375 262 0 36 chr9 3412301 3412385 -114450242 - MIR3 SINE MIR -19 189 109 2227 112 0 10 chr9 3413065 3413378 -114449249 + AluSx SINE Alu 1 310 -2 305 176 15 0 chr9 3413648 3413716 -114448911 - MER113 DNA MER1_type? -408 113 45 459 282 107 38 chr9 3414978 3415240 -114447387 + L2 LINE L2 1709 1988 -1326 1788 151 71 0 chr9 3416110 3416447 -114446180 - MER46B DNA MER2_type 0 236 1 208 354 89 54 chr9 3416448 3417053 -114445574 + L2 LINE L2 2619 3244 -28 24 32 0 0 chr9 3417479 3417510 -114445117 + AT_rich Low_complexity Low_complexity 1 31 0 636 282 14 53 chr9 3417795 3418004 -114444623 - MIR SINE MIR -4 258 58 2065 98 14 11 chr9 3418780 3419095 -114443532 + AluSx SINE Alu 1 316 0 23 33 0 0 chr9 3419235 3419265 -114443362 + AT_rich Low_complexity Low_complexity 1 30 0 219 390 83 38 chr9 3420175 3420644 -114441983 - L2 LINE L2 0 3313 2824 495 268 52 7 chr9 3420672 3420825 -114441802 - MER112 DNA MER1_type -11 249 90 242 244 12 93 chr9 3420874 3420960 -114441667 - MER112 DNA MER1_type -181 79 1 780 274 98 57 chr9 3421355 3421796 -114440831 + LTR67 LTR ERVL 99 557 0 940 226 0 5 chr9 3422483 3422673 -114439954 - MER5A DNA MER1_type 0 189 1 2164 105 0 3 chr9 3422749 3423045 -114439582 + AluSg SINE Alu 1 295 -15 562 222 40 0 chr9 3423525 3423651 -114438976 - L2 LINE L2 -1 3312 3182 7570 35 0 0 chr9 3423680 3425356 -114437271 + L1PA4 LINE L1 4477 6152 -3 300 289 22 0 chr9 3425369 3425459 -114437168 - L2 LINE L2 -1393 1921 1830 273 282 56 0 chr9 3425566 3425637 -114436990 - L2 LINE L2 -1 3312 3238 21 36 0 0 chr9 3426593 3426621 -114436006 + AT_rich Low_complexity Low_complexity 1 28 0 1263 164 5 14 chr9 3428203 3428422 -114434205 - MER46A DNA MER2_type 0 236 20 281 356 25 19 chr9 3429473 3429633 -114432994 - MIR SINE MIR -27 235 75 297 231 26 39 chr9 3429696 3429774 -114432853 - L2 LINE L2 -40 3273 3197 24 32 0 0 chr9 3430053 3430084 -114432543 + AT_rich Low_complexity Low_complexity 1 31 0 2060 131 3 3 chr9 3430980 3431278 -114431349 + AluSx SINE Alu 1 298 -14 1972 248 66 106 chr9 3431440 3431483 -114431144 - L1MC5 LINE L1 -164 7797 7754 2051 125 3 10 chr9 3431483 3431779 -114430848 + AluSq SINE Alu 1 294 -19 1972 248 66 106 chr9 3431779 3433757 -114428870 - L1MC5 LINE L1 -207 7754 5848 5325 170 55 28 chr9 3433964 3435211 -114427416 + L1MC1 LINE L1 5042 6322 -11 22 0 0 0 chr9 3435285 3435307 -114427320 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr9 3435414 3435437 -114427190 + (CAA)n Simple_repeat Simple_repeat 2 24 0 399 312 104 21 chr9 3435528 3435807 -114426820 + L1ME4a LINE L1 5257 5558 -612 237 243 40 59 chr9 3435989 3436141 -114426486 + L1ME4a LINE L1 5777 5925 -1883 210 284 15 0 chr9 3436148 3436215 -114426412 + (TA)n Simple_repeat Simple_repeat 2 69 0 234 225 0 67 chr9 3436218 3436307 -114426320 + L1ME4a LINE L1 5937 6019 -102 23 78 0 0 chr9 3436387 3436438 -114426189 + AT_rich Low_complexity Low_complexity 1 51 0 4144 264 113 50 chr9 3436538 3436820 -114425807 + L1MEc LINE L1 31 294 -5921 4089 27 0 0 chr9 3436820 3437299 -114425328 + L1PA3 LINE L1 5674 6152 -3 4144 264 113 50 chr9 3437299 3438244 -114424383 + L1MEc LINE L1 294 1178 -5037 334 265 0 0 chr9 3438244 3438327 -114424300 + FLAM SINE Alu 43 125 -8 4144 264 113 50 chr9 3438327 3440097 -114422530 + L1MEc LINE L1 1178 2836 -3379 471 35 0 0 chr9 3440097 3440154 -114422473 + (GGAA)n Simple_repeat Simple_repeat 1 57 0 4144 264 113 50 chr9 3440154 3440882 -114421745 + L1MEc LINE L1 2836 4042 -2173 438 69 0 0 chr9 3440882 3440940 -114421687 + (CA)n Simple_repeat Simple_repeat 2 59 0 4144 264 113 50 chr9 3440940 3441028 -114421599 + L1MEc LINE L1 4042 4123 -2092 26 30 0 0 chr9 3441346 3441379 -114421248 + AT_rich Low_complexity Low_complexity 1 33 0 465 174 58 0 chr9 3441387 3441508 -114421119 + L1M4 LINE L1 2904 3031 -3115 1735 145 20 3 chr9 3441517 3441820 -114420807 + L1MA4 LINE L1 5978 6285 -15 182 329 34 67 chr9 3442057 3442206 -114420421 + MIR SINE MIR 107 250 -12 2316 110 27 19 chr9 3442615 3442987 -114419640 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr9 3443672 3443708 -114418919 + AT_rich Low_complexity Low_complexity 1 36 0 713 138 0 17 chr9 3445509 3445625 -114417002 + FLAM_C SINE Alu 28 141 -2 1616 160 4 0 chr9 3445640 3445917 -114416710 + AluJb SINE Alu 33 310 0 228 266 31 94 chr9 3447522 3447650 -114414977 - MIR SINE MIR -33 229 110 388 200 166 35 chr9 3447734 3447826 -114414801 - MER113 DNA MER1_type? 0 521 442 1997 131 0 7 chr9 3447826 3448117 -114414510 - AluSc SINE Alu -20 289 1 388 200 166 35 chr9 3448117 3448169 -114414458 - MER113 DNA MER1_type? -79 442 358 2214 81 14 3 chr9 3448963 3449258 -114413369 + AluSc SINE Alu 1 298 -11 298 314 62 67 chr9 3449943 3450153 -114412474 - MLT1I LTR MaLR -119 290 82 812 54 8 31 chr9 3450567 3450697 -114411930 + (TTTC)n Simple_repeat Simple_repeat 2 128 0 1430 251 115 6 chr9 3451033 3451532 -114411095 + MLT1E2 LTR MaLR 92 626 0 23 68 0 0 chr9 3452173 3452217 -114410410 + AT_rich Low_complexity Low_complexity 1 44 0 251 305 76 19 chr9 3452862 3452967 -114409660 + L2 LINE L2 3198 3308 -5 1722 185 55 9 chr9 3453089 3453435 -114409192 - MLT1A1 LTR MaLR -1 364 3 205 26 53 26 chr9 3453756 3453794 -114408833 + (TTTG)n Simple_repeat Simple_repeat 1 39 0 2133 41 3 45 chr9 3453796 3454086 -114408541 - AluY SINE Alu -33 278 1 30 0 0 0 chr9 3454124 3454154 -114408473 + AT_rich Low_complexity Low_complexity 1 30 0 42 20 0 0 chr9 3454408 3454457 -114408170 + AT_rich Low_complexity Low_complexity 1 49 0 497 218 80 80 chr9 3454462 3454650 -114407977 + L1ME2 LINE L1 5966 6153 -11 28 48 0 0 chr9 3454957 3454999 -114407628 + AT_rich Low_complexity Low_complexity 1 42 0 366 355 86 19 chr9 3455591 3455859 -114406768 + L3b LINE CR1 1105 1390 -193 1238 288 49 14 chr9 3456003 3456433 -114406194 + LTR16C LTR ERVL 43 487 -4 1832 109 0 117 chr9 3456481 3456831 -114405796 - AluSg1 SINE Alu 0 309 1 350 280 56 0 chr9 3457077 3457202 -114405425 + MER113 DNA MER1_type? 309 440 -81 289 255 143 0 chr9 3457441 3457539 -114405088 + MIR3 SINE MIR 74 185 -23 223 263 13 26 chr9 3457646 3457722 -114404905 + GA-rich Low_complexity Low_complexity 3 77 0 2062 111 0 0 chr9 3457742 3458022 -114404605 + AluY SINE Alu 1 280 -31 297 75 0 0 chr9 3458022 3458062 -114404565 + (CA)n Simple_repeat Simple_repeat 1 40 0 3729 126 52 56 chr9 3458066 3458798 -114403829 + L1MB2 LINE L1 5432 6164 -7 181 339 18 0 chr9 3458813 3458869 -114403758 + MIR3 SINE MIR 137 193 -15 2197 105 0 0 chr9 3459625 3459919 -114402708 + AluY SINE Alu 1 294 -17 2968 215 59 48 chr9 3459952 3460517 -114402110 + L1ME1 LINE L1 5318 5887 -279 7454 31 7 0 chr9 3460517 3461545 -114401082 + L1PA5 LINE L1 5119 6152 -2 2968 215 59 48 chr9 3461545 3461817 -114400810 + L1ME1 LINE L1 5887 6154 -12 297 179 38 19 chr9 3461876 3461982 -114400645 - Charlie7 DNA MER1_type -74 2538 2431 672 282 143 27 chr9 3461982 3462354 -114400273 - Charlie7 DNA MER1_type -1892 720 306 2163 131 3 0 chr9 3462490 3462802 -114399825 - AluSq SINE Alu 0 313 1 451 302 93 22 chr9 3463001 3463269 -114399358 - L2 LINE L2 0 3313 3027 411 21 0 0 chr9 3463826 3463874 -114398753 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 2083 108 10 7 chr9 3463877 3464173 -114398454 - AluSq SINE Alu -16 297 1 182 313 0 0 chr9 3464398 3464446 -114398181 + L2 LINE L2 3209 3256 -16 299 271 0 14 chr9 3464450 3464529 -114398098 - MIR SINE MIR -81 127 49 21 71 0 0 chr9 3464950 3464992 -114397635 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr9 3465869 3465895 -114396732 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 22 0 0 0 chr9 3465942 3465964 -114396663 + AT_rich Low_complexity Low_complexity 1 22 0 712 186 23 8 chr9 3466011 3466140 -114396487 - FRAM SINE Alu -45 131 1 390 246 79 0 chr9 3466988 3467102 -114395525 - L1MC4 LINE L1 0 8042 7920 195 42 0 0 chr9 3467687 3467711 -114394916 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 345 289 96 26 chr9 3468400 3468556 -114394071 + MIR SINE MIR 96 262 0 208 348 79 22 chr9 3468720 3468947 -114393680 + L2 LINE L2 2835 3074 -239 1851 135 83 0 chr9 3469373 3469662 -114392965 + AluSp SINE Alu 1 313 0 200 213 0 0 chr9 3470231 3470278 -114392349 + (TAA)n Simple_repeat Simple_repeat 1 47 0 445 353 54 5 chr9 3470278 3470502 -114392125 - MIR SINE MIR 0 262 28 208 376 21 0 chr9 3470994 3471087 -114391540 + L2 LINE L2 2941 3035 -237 201 167 0 0 chr9 3471231 3471261 -114391366 + L2 LINE L2 3206 3235 -37 * 221 300 0 0 chr9 3471260 3471310 -114391317 - L3 LINE CR1 -469 1108 1059 23 0 0 0 chr9 3471310 3471333 -114391294 + AT_rich Low_complexity Low_complexity 1 23 0 1587 179 100 3 chr9 3473501 3473830 -114388797 + MER46B DNA MER2_type 1 236 0 742 124 0 18 chr9 3474066 3474179 -114388448 + THE1B LTR MaLR 1 111 -253 1678 93 0 72 chr9 3474183 3474461 -114388166 + THE1-int LTR MaLR 1 258 -1322 2179 133 8 31 chr9 3474474 3474834 -114387793 + THE1B LTR MaLR 13 364 0 368 17 317 0 chr9 3474851 3474911 -114387716 - MADE1 DNA Mariner 0 80 2 338 238 20 0 chr9 3475637 3475738 -114386889 - MER113 DNA MER1_type? -323 198 96 757 258 104 43 chr9 3475746 3476758 -114385869 + HAL1 LINE L1 380 1534 -973 488 244 18 18 chr9 3476745 3476909 -114385718 + HAL1 LINE L1 2022 2185 -322 * 186 43 0 0 chr9 3476992 3477015 -114385612 + (TGGG)n Simple_repeat Simple_repeat 1 23 0 446 291 20 45 chr9 3477075 3477274 -114385353 + HAL1 LINE L1 2285 2478 -29 21 36 0 0 chr9 3477665 3477693 -114384934 + AT_rich Low_complexity Low_complexity 1 28 0 1086 212 4 4 chr9 3477704 3477935 -114384692 + L1PB4 LINE L1 5925 6155 -1 21 36 0 0 chr9 3478091 3478119 -114384508 + AT_rich Low_complexity Low_complexity 1 28 0 2287 77 7 3 chr9 3478127 3478427 -114384200 + AluY SINE Alu 1 301 -10 204 312 205 9 chr9 3478926 3479141 -114383486 - L2 LINE L2 -5 3308 3052 328 217 0 72 chr9 3479208 3479291 -114383336 + L2 LINE L2 3232 3308 -5 7504 36 1 0 chr9 3479986 3481663 -114380964 - L1PA4 LINE L1 0 6155 4477 562 222 40 0 chr9 3481692 3481818 -114380809 + L2 LINE L2 3182 3312 -1 2092 109 3 3 chr9 3482298 3482592 -114380035 - AluSg SINE Alu -16 294 1 940 226 0 5 chr9 3482668 3482858 -114379769 + MER5A DNA MER1_type 1 189 0 780 274 98 57 chr9 3483545 3483986 -114378641 - LTR67 LTR ERVL 0 557 99 242 244 12 93 chr9 3484381 3484467 -114378160 + MER112 DNA MER1_type 1 79 -181 495 268 52 7 chr9 3484516 3484669 -114377958 + MER112 DNA MER1_type 90 249 -11 219 390 83 38 chr9 3484697 3485166 -114377461 + L2 LINE L2 2824 3313 0 23 33 0 0 chr9 3486077 3486107 -114376520 + AT_rich Low_complexity Low_complexity 1 30 0 2064 98 14 11 chr9 3486247 3486562 -114376065 - AluSx SINE Alu 0 316 1 636 282 14 53 chr9 3487338 3487547 -114375080 + MIR SINE MIR 58 258 -4 24 32 0 0 chr9 3487832 3487863 -114374764 + AT_rich Low_complexity Low_complexity 1 31 0 208 354 89 54 chr9 3488289 3488894 -114373733 - L2 LINE L2 -28 3244 2619 1788 151 71 0 chr9 3488895 3489232 -114373395 + MER46B DNA MER2_type 1 236 0 459 282 107 38 chr9 3490102 3490364 -114372263 - L2 LINE L2 -1326 1988 1709 305 176 15 0 chr9 3491626 3491694 -114370933 + MER113 DNA MER1_type? 45 113 -408 2227 112 0 10 chr9 3491964 3492277 -114370350 - AluSx SINE Alu -2 310 1 375 262 0 36 chr9 3492957 3493041 -114369586 + MIR3 SINE MIR 109 189 -19 2906 89 10 2 chr9 3494662 3495068 -114367559 + L1PA12 LINE L1 5753 6161 -7 180 238 0 0 chr9 3495214 3495277 -114367350 + (TA)n Simple_repeat Simple_repeat 2 64 0 22 35 0 0 chr9 3495750 3495779 -114366848 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr9 3495985 3496013 -114366614 + AT_rich Low_complexity Low_complexity 1 28 0 2179 105 0 10 chr9 3496406 3496720 -114365907 - AluSx SINE Alu -1 311 1 344 226 89 96 chr9 3496768 3496914 -114365713 - L1MC4a LINE L1 -1844 5964 5820 21 36 0 0 chr9 3497665 3497693 -114364934 + AT_rich Low_complexity Low_complexity 1 28 0 596 281 107 48 chr9 3498499 3498653 -114363974 + L1MC4 LINE L1 4140 4283 -1863 2173 118 0 3 chr9 3498653 3498950 -114363677 - AluSx SINE Alu -16 296 1 596 281 107 48 chr9 3498950 3499550 -114363077 + L1MC4 LINE L1 4283 4939 -1207 707 301 56 43 chr9 3499886 3500196 -114362431 + L1MC4 LINE L1 5409 5727 -2081 2030 113 14 7 chr9 3500196 3500488 -114362139 + AluSx SINE Alu 1 294 -18 707 301 56 43 chr9 3500488 3500572 -114362055 + L1MC4 LINE L1 5727 5808 -2000 387 0 0 0 chr9 3500588 3500631 -114361996 + (TA)n Simple_repeat Simple_repeat 2 44 0 244 254 0 0 chr9 3500653 3500708 -114361919 + L1MC4 LINE L1 6649 6703 -1339 6462 37 4 2 chr9 3501028 3501821 -114360806 - L1PA4 LINE L1 0 6155 5362 201 256 0 0 chr9 3501822 3501861 -114360766 + L3 LINE CR1 1526 1564 -13 410 296 140 34 chr9 3502488 3502667 -114359960 - MIR3 SINE MIR -9 199 2 457 297 30 30 chr9 3502759 3502924 -114359703 - MIR SINE MIR 0 262 98 352 254 164 0 chr9 3502973 3503083 -114359544 - Charlie8 DNA MER1_type -2179 238 111 632 0 0 0 chr9 3503839 3503915 -114358712 + L1HS LINE L1 6080 6155 0 312 282 55 55 chr9 3504010 3504140 -114358487 + Charlie8 DNA MER1_type 7 139 -202 2002 135 0 28 chr9 3504140 3504458 -114358169 + AluSq SINE Alu 1 309 -4 312 282 55 55 chr9 3504458 3504490 -114358137 + Charlie8 DNA MER1_type 138 169 -172 2168 111 3 0 chr9 3504657 3504955 -114357672 + AluSg SINE Alu 1 299 -11 380 211 0 0 chr9 3505103 3505179 -114357448 - MIR SINE MIR -106 156 81 850 258 41 9 chr9 3505737 3505958 -114356669 - MIR SINE MIR -33 229 2 32 26 0 0 chr9 3507638 3507677 -114354950 + AT_rich Low_complexity Low_complexity 1 39 0 446 295 54 63 chr9 3509838 3510153 -114352474 + L2 LINE L2 1762 2073 -1241 201 158 0 0 chr9 3510185 3510223 -114352404 + A-rich Low_complexity Low_complexity 5 42 0 216 367 0 46 chr9 3510303 3510412 -114352215 + L2 LINE L2 2207 2310 -1004 418 325 61 99 chr9 3510852 3510934 -114351693 + L2 LINE L2 2842 2926 -346 1695 165 3 25 chr9 3510934 3511249 -114351378 - AluJb SINE Alu -4 308 1 418 325 61 99 chr9 3511249 3511609 -114351018 + L2 LINE L2 2926 3267 -5 406 198 113 19 chr9 3512299 3512405 -114350222 - MIR SINE MIR -49 213 98 23 0 0 0 chr9 3512405 3512428 -114350199 + AT_rich Low_complexity Low_complexity 1 23 0 222 62 0 0 chr9 3513570 3513602 -114349025 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 285 135 0 0 chr9 3513601 3513653 -114348974 + (CA)n Simple_repeat Simple_repeat 1 52 0 290 315 170 6 chr9 3514774 3514939 -114347688 - MIR3 SINE MIR -7 201 10 558 0 0 0 chr9 3515150 3515212 -114347415 + (TG)n Simple_repeat Simple_repeat 1 62 0 1472 175 77 0 chr9 3516358 3516643 -114345984 - AluJb SINE Alu -5 307 1 923 103 0 0 chr9 3516661 3516787 -114345840 - AluSq/x SINE Alu -181 132 7 298 370 82 32 chr9 3519010 3519229 -114343398 - MIR SINE MIR -13 249 20 307 247 78 0 chr9 3519488 3519565 -114343062 + L1MC4 LINE L1 6614 6696 -1346 567 221 0 0 chr9 3519635 3519793 -114342834 + (TA)n Simple_repeat Simple_repeat 1 158 0 243 236 0 0 chr9 3519943 3520015 -114342612 + (TA)n Simple_repeat Simple_repeat 1 72 0 775 188 29 0 chr9 3520022 3520160 -114342467 - FRAM SINE Alu -36 140 1 376 279 124 25 chr9 3521029 3521190 -114341437 - MIR SINE MIR -84 178 2 2152 217 112 11 chr9 3521410 3522429 -114340198 + L1MEc LINE L1 1982 3049 -3166 720 271 15 73 chr9 3522855 3523128 -114339499 + MIR SINE MIR 6 262 0 2218 115 0 0 chr9 3523158 3523463 -114339164 - AluSx SINE Alu -7 305 1 21 36 0 0 chr9 3524110 3524138 -114338489 + AT_rich Low_complexity Low_complexity 1 28 0 511 156 0 7 chr9 3524417 3524541 -114338086 + MER2 DNA MER2_type 1 204 -141 303 111 74 25 chr9 3524541 3524622 -114338005 - L1MA4A LINE L1 0 6303 6219 303 291 0 38 chr9 3524631 3524710 -114337917 + MER2 DNA MER2_type 270 345 0 404 205 47 94 chr9 3525226 3525353 -114337274 - MIR SINE MIR -56 206 86 286 327 77 0 chr9 3526367 3526471 -114336156 - MIR SINE MIR -40 222 111 24 0 0 0 chr9 3527686 3527710 -114334917 + AT_rich Low_complexity Low_complexity 1 24 0 2027 197 96 48 chr9 3527938 3528543 -114334084 + L1ME1 LINE L1 5504 6137 -29 320 77 19 0 chr9 3528544 3528596 -114334031 + (TA)n Simple_repeat Simple_repeat 1 53 0 2209 77 0 7 chr9 3528649 3528948 -114333679 + AluY SINE Alu 1 297 -14 2677 19 3 0 chr9 3529424 3529734 -114332893 - AluY SINE Alu 0 311 1 1542 167 13 39 chr9 3530022 3530328 -114332299 + AluJb SINE Alu 1 298 -14 664 249 63 34 chr9 3530706 3531056 -114331571 - L1M4 LINE L1 -4879 1663 1304 244 213 0 0 chr9 3531214 3531261 -114331366 - MLT1K LTR MaLR -55 533 487 2302 92 20 0 chr9 3531511 3531814 -114330813 - AluSc SINE Alu 0 309 1 1111 308 186 19 chr9 3531814 3532440 -114330187 + L3 LINE CR1 246 1015 -562 830 212 111 49 chr9 3532440 3532784 -114329843 + MLT1A1 LTR MaLR 1 365 0 1111 308 186 19 chr9 3532784 3532895 -114329732 + L3 LINE CR1 1015 1106 -471 300 283 15 91 chr9 3533079 3533277 -114329350 - L2 LINE L2 -48 3265 3083 216 0 0 0 chr9 3533294 3533318 -114329309 + (GGGAA)n Simple_repeat Simple_repeat 4 27 0 230 365 65 35 chr9 3533449 3533649 -114328978 - L2 LINE L2 -485 2829 2624 250 272 161 44 chr9 3533711 3533902 -114328725 + MIR SINE MIR 3 216 -46 38 22 0 0 chr9 3534789 3534834 -114327793 + AT_rich Low_complexity Low_complexity 1 45 0 2081 114 0 33 chr9 3534951 3535257 -114327370 - AluSx SINE Alu -11 301 6 453 290 30 8 chr9 3535538 3535669 -114326958 - MIR SINE MIR -31 231 98 1443 196 0 8 chr9 3536107 3536372 -114326255 - AluJo SINE Alu -49 263 1 617 144 0 9 chr9 3536848 3536959 -114325668 - L1MC3 LINE L1 -2 7783 7674 245 284 0 15 chr9 3536983 3537050 -114325577 - MLT1F1 LTR MaLR -457 110 45 1729 161 40 83 chr9 3537050 3537138 -114325489 - L1MC3 LINE L1 -687 7098 7008 1736 143 32 4 chr9 3537138 3537417 -114325210 - AluJb SINE Alu -25 287 1 1729 161 40 83 chr9 3537417 3537749 -114324878 - L1MC3 LINE L1 -777 7008 6696 202 244 0 0 chr9 3538263 3538308 -114324319 + A-rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr9 3538532 3538554 -114324073 + AT_rich Low_complexity Low_complexity 1 22 0 1632 150 25 50 chr9 3538783 3539103 -114323524 - AluJo SINE Alu 0 312 1 461 260 64 46 chr9 3539468 3539641 -114322986 - MIR SINE MIR -17 245 70 352 118 118 118 chr9 3540230 3540323 -114322304 - ORSL DNA AcHobo 0 275 183 2531 37 0 0 chr9 3540349 3540645 -114321982 - AluY SINE Alu -15 296 1 215 127 18 36 chr9 3540710 3540765 -114321862 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 192 284 84 84 chr9 3541650 3541745 -114320882 + MIR SINE MIR 38 132 -76 14011 129 29 104 chr9 3542013 3544951 -114317676 + Tigger2 DNA MER2_type 3 2718 0 1107 185 25 0 chr9 3545114 3545314 -114317313 - MER58A DNA MER1_type -19 205 1 414 230 30 10 chr9 3545372 3545472 -114317155 - MER5A DNA MER1_type -79 110 9 355 298 8 58 chr9 3545486 3545607 -114317020 + L2 LINE L2 3199 3313 0 226 396 9 0 chr9 3545843 3545949 -114316678 + L2 LINE L2 2877 2983 -289 4211 121 65 8 chr9 3546094 3546806 -114315821 - Tigger3(Golem) DNA MER2_type -1 3028 2277 652 185 0 0 chr9 3546797 3546905 -114315722 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 369 280 21 0 chr9 3546970 3547063 -114315564 + L2 LINE L2 3178 3272 0 207 0 0 0 chr9 3547126 3547149 -114315478 + (A)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr9 3548262 3548285 -114314342 + AT_rich Low_complexity Low_complexity 1 23 0 6811 240 124 21 chr9 3549743 3552415 -114310212 + L1ME1 LINE L1 2125 5074 -1141 3474 212 128 70 chr9 3552414 3552632 -114309995 + L1MC3 LINE L1 6371 6575 -1210 * 216 0 0 0 chr9 3552632 3552656 -114309971 + (GA)n Simple_repeat Simple_repeat 1 24 0 3474 212 128 70 chr9 3552656 3553153 -114309474 + L1MC3 LINE L1 6575 7042 -743 289 310 0 0 chr9 3553153 3553224 -114309403 + MLT1F1 LTR MaLR 64 134 -433 3474 212 128 70 chr9 3553224 3553241 -114309386 + L1MC3 LINE L1 7042 7057 -728 2194 92 3 0 chr9 3553241 3553545 -114309082 + AluSq SINE Alu 1 305 0 3474 212 128 70 chr9 3553545 3554076 -114308551 + L1MC3 LINE L1 7057 7784 -1 3170 214 59 29 chr9 3554072 3554514 -114308113 + L1ME1 LINE L1 5061 5488 -747 * 5180 84 13 0 chr9 3554514 3555212 -114307415 - L1PA11 LINE L1 0 6174 5468 3170 214 59 29 chr9 3555212 3555922 -114306705 + L1ME1 LINE L1 5488 6230 -5 737 318 32 48 chr9 3555940 3556314 -114306313 + L3 LINE CR1 1183 1550 -27 230 301 126 7 chr9 3556643 3556786 -114305841 - MIR SINE MIR 0 262 103 504 374 161 15 chr9 3557057 3557461 -114305166 + L2 LINE L2 2810 3272 0 324 340 19 0 chr9 3561884 3561987 -114300640 + MIR SINE MIR 47 151 -111 21 0 0 0 chr9 3562736 3562757 -114299870 + AT_rich Low_complexity Low_complexity 1 21 0 45 0 0 0 chr9 3563383 3563428 -114299199 + AT_rich Low_complexity Low_complexity 1 45 0 3577 237 93 37 chr9 3564346 3565771 -114296856 + L1ME LINE L1 3591 5095 -1051 1993 140 37 31 chr9 3565872 3566223 -114296404 + MLT1B LTR MaLR 30 382 -8 544 255 101 27 chr9 3566254 3566442 -114296185 - LTR33 LTR ERVL -8 513 312 743 246 68 50 chr9 3566470 3566690 -114295937 - LTR33 LTR ERVL -297 224 1 1245 161 161 20 chr9 3568405 3568659 -114293968 - AluJo SINE Alu -12 290 1 2078 100 4 7 chr9 3569367 3569648 -114292979 + AluSp SINE Alu 5 284 -29 224 30 30 0 chr9 3570270 3570303 -114292324 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2154 100 0 0 chr9 3570305 3570585 -114292042 - AluSg SINE Alu -30 280 1 2741 88 0 23 chr9 3570585 3570982 -114291645 - L1MA3 LINE L1 -478 5827 5440 3540 83 2 10 chr9 3570995 3571491 -114291136 + L1PB1 LINE L1 5660 6151 0 2351 59 3 26 chr9 3571813 3572119 -114290508 - AluY SINE Alu -12 299 1 2114 106 10 3 chr9 3572232 3572524 -114290103 + AluSp SINE Alu 1 294 -19 626 200 32 0 chr9 3572618 3572743 -114289884 + L1ME LINE L1 5474 5602 -564 2410 70 17 0 chr9 3572743 3573041 -114289586 + AluSc SINE Alu 1 303 -6 1413 143 84 16 chr9 3573050 3573301 -114289326 + AluJb SINE Alu 36 303 -9 2418 76 3 0 chr9 3573307 3573608 -114289019 + AluSx SINE Alu 3 304 -8 675 231 78 12 chr9 3573791 3574087 -114288540 - L1MCa LINE L1 -3948 2478 2216 21 0 0 0 chr9 3574244 3574265 -114288362 + AT_rich Low_complexity Low_complexity 1 21 0 1201 211 24 0 chr9 3574265 3574511 -114288116 - MER90 LTR ERV1 0 614 363 2126 93 14 7 chr9 3574511 3574800 -114287827 - AluSc SINE Alu -18 291 1 21 0 0 0 chr9 3574805 3574826 -114287801 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr9 3575178 3575200 -114287427 + (TC)n Simple_repeat Simple_repeat 2 23 0 412 288 106 8 chr9 3575623 3575755 -114286872 - MIR3 SINE MIR -5 203 59 1598 161 11 90 chr9 3576328 3576706 -114285921 + MER7A DNA MER2_type 1 346 0 822 124 23 0 chr9 3578074 3578203 -114284424 + LTR13 LTR ERVK 1 132 -875 6591 66 6 75 chr9 3578207 3579191 -114283436 + LTR13 LTR ERVK 92 1007 0 1982 146 3 13 chr9 3579274 3579589 -114283038 - AluJo SINE Alu 0 312 1 303 276 114 16 chr9 3579715 3579838 -114282789 + MIR SINE MIR 23 157 -105 764 169 22 7 chr9 3580295 3580431 -114282196 + MER5A DNA MER1_type 1 138 -51 303 309 168 35 chr9 3580778 3581063 -114281564 - L3 LINE CR1 -35 1542 1220 295 241 11 35 chr9 3581972 3582059 -114280568 - MIR SINE MIR -7 255 171 402 204 214 0 chr9 3582085 3582183 -114280444 - AluJb SINE Alu -193 119 1 767 280 76 5 chr9 3582191 3582402 -114280225 + L2 LINE L2 2109 2334 -980 1467 181 4 12 chr9 3582410 3582669 -114279958 - AluJo SINE Alu -55 257 1 822 209 63 29 chr9 3582674 3582880 -114279747 + L1M4 LINE L1 3926 4138 -2008 26 64 0 0 chr9 3583873 3583920 -114278707 + AT_rich Low_complexity Low_complexity 1 47 0 21 57 0 0 chr9 3584249 3584284 -114278343 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr9 3585230 3585264 -114277363 + AT_rich Low_complexity Low_complexity 1 34 0 1499 208 10 17 chr9 3585705 3585993 -114276634 + AluJo SINE Alu 1 286 -26 1165 175 0 54 chr9 3586560 3586783 -114275844 - AluJo SINE Alu -17 295 85 733 247 123 0 chr9 3586966 3587193 -114275434 + MIR SINE MIR 8 262 0 347 249 116 52 chr9 3588069 3588242 -114274385 + MER20 DNA MER1_type 29 212 -7 229 212 212 0 chr9 3588254 3588320 -114274307 + L2 LINE L2 3229 3308 -5 207 276 161 0 chr9 3588624 3588711 -114273916 + MIR SINE MIR 12 112 -150 420 297 27 60 chr9 3588723 3588793 -114273834 + MIR SINE MIR 84 155 -107 756 248 97 19 chr9 3588793 3589103 -114273524 - MER46C DNA MER2_type 0 338 5 420 297 27 60 chr9 3589103 3589217 -114273410 + MIR SINE MIR 155 262 0 1280 176 9 94 chr9 3589679 3589997 -114272630 + AluJo SINE Alu 1 291 -21 28 48 0 0 chr9 3589997 3590039 -114272588 + AT_rich Low_complexity Low_complexity 1 42 0 295 315 79 0 chr9 3590169 3590296 -114272331 - MIR SINE MIR -6 256 120 1583 95 5 5 chr9 3590719 3590929 -114271698 + AluSp SINE Alu 1 210 -103 3222 179 59 14 chr9 3591036 3591684 -114270943 + L1MB5 LINE L1 5492 6168 -6 6661 61 2 24 chr9 3591769 3593161 -114269466 + L1PA7 LINE L1 4774 6134 -20 285 29 0 0 chr9 3593161 3593195 -114269432 + (TG)n Simple_repeat Simple_repeat 2 35 0 367 325 43 11 chr9 3593203 3593391 -114269236 + L1M4 LINE L1 4260 4453 -1693 23 33 0 0 chr9 3593803 3593833 -114268794 + AT_rich Low_complexity Low_complexity 1 30 0 1375 74 0 23 chr9 3593856 3594032 -114268595 + AluY SINE Alu 1 172 -139 22 35 0 0 chr9 3594718 3594747 -114267880 + AT_rich Low_complexity Low_complexity 1 29 0 2568 49 0 0 chr9 3595648 3595954 -114266673 - AluY SINE Alu -5 306 1 326 175 23 115 chr9 3595978 3596127 -114266500 - L1ME LINE L1 -355 5766 5674 2469 59 0 13 chr9 3596127 3596430 -114266197 - AluY SINE Alu -10 301 3 326 175 23 115 chr9 3596430 3596465 -114266162 - L1ME LINE L1 -447 5674 5637 2474 55 3 3 chr9 3596615 3596925 -114265702 - AluY SINE Alu -1 310 1 480 194 21 11 chr9 3597181 3597274 -114265353 + MER20 DNA MER1_type 1 94 -125 435 123 14 0 chr9 3598087 3598160 -114264467 + AluS SINE Alu 1 74 -239 2224 66 3 35 chr9 3598299 3598617 -114264010 + AluY SINE Alu 1 308 -3 4653 190 50 30 chr9 3598631 3600262 -114262365 - L1MB2 LINE L1 -18 6153 4555 2023 127 0 10 chr9 3600262 3600581 -114262046 - AluJb SINE Alu 0 312 1 4653 190 50 30 chr9 3600581 3600955 -114261672 - L1MB2 LINE L1 -1616 4555 4104 2368 55 3 35 chr9 3600955 3601265 -114261362 + AluY SINE Alu 1 300 -11 4653 190 50 30 chr9 3601265 3601295 -114261332 - L1MB2 LINE L1 -2067 4104 4076 37646 55 7 2 chr9 3601304 3606918 -114255709 - L1PA5 LINE L1 0 6154 511 369 62 31 31 chr9 3607020 3607084 -114255543 + Alu SINE Alu 238 301 -1 4540 207 127 36 chr9 3607098 3607799 -114254828 + L1MCb LINE L1 636 1272 -5292 2521 46 0 7 chr9 3607799 3608103 -114254524 - AluY SINE Alu -9 302 1 4540 207 127 36 chr9 3608103 3609164 -114253463 + L1MCb LINE L1 1272 2236 -4328 7258 47 5 0 chr9 3609164 3610225 -114252402 + L1PA5 LINE L1 5094 6151 -3 4540 207 127 36 chr9 3610225 3611000 -114251627 + L1MCb LINE L1 2236 3351 -3213 1340 246 47 0 chr9 3611008 3611395 -114251232 + L1MCb LINE L1 3908 4312 -2252 342 131 0 0 chr9 3611401 3611462 -114251165 + L1MC2 LINE L1 6274 6334 -10 2736 244 29 33 chr9 3611467 3612465 -114250162 + L1M4 LINE L1 2490 3483 -2663 2080 224 102 8 chr9 3612565 3613209 -114249418 - L1M4 LINE L1 -1264 4882 4178 364 262 24 36 chr9 3613335 3613503 -114249124 - HAL1b LINE L1 -435 913 748 * 622 303 101 21 chr9 3613485 3613822 -114248805 + L1MEd LINE L1 6 369 -5750 497 171 0 0 chr9 3614228 3614304 -114248323 + AluJ/FLAM SINE Alu 6 81 -231 382 93 0 0 chr9 3614383 3614437 -114248190 + Alu SINE Alu 243 296 -6 182 333 56 0 chr9 3615184 3615274 -114247353 + MIR SINE MIR 49 143 -119 1963 117 4 0 chr9 3615506 3615779 -114246848 - AluSx SINE Alu 0 312 39 22 35 0 0 chr9 3615870 3615899 -114246728 + AT_rich Low_complexity Low_complexity 1 29 0 436 123 74 164 chr9 3616145 3616267 -114246360 + FRAM SINE Alu 49 159 -17 586 249 117 10 chr9 3616563 3616760 -114245867 - MIR SINE MIR 0 262 45 2091 137 0 0 chr9 3616822 3617115 -114245512 + AluY SINE Alu 1 293 -18 1492 130 0 5 chr9 3617361 3617577 -114245050 + AluSg/x SINE Alu 86 300 -10 509 379 86 19 chr9 3617590 3618123 -114244504 + L2 LINE L2 2268 2836 -478 272 368 40 0 chr9 3618542 3618667 -114243960 + L2 LINE L2 2907 3036 -236 684 325 51 0 chr9 3618677 3618914 -114243713 - MIR SINE MIR -3 259 11 2136 133 0 0 chr9 3619124 3619426 -114243201 + AluSg SINE Alu 1 302 -8 296 217 36 12 chr9 3620807 3620890 -114241737 + MLT1J1 LTR MaLR 360 444 -2 1428 167 0 0 chr9 3621324 3621540 -114241087 + AluJb SINE Alu 72 287 -25 32 0 0 0 chr9 3621930 3621962 -114240665 + AT_rich Low_complexity Low_complexity 1 32 0 1643 126 84 11 chr9 3621962 3622224 -114240403 - AluSx SINE Alu -31 281 1 520 265 90 90 chr9 3623350 3623761 -114238866 + MLT1J LTR MaLR 1 411 -100 502 254 24 102 chr9 3623966 3624171 -114238456 + MIR SINE MIR 20 208 -54 252 0 0 0 chr9 3624196 3624224 -114238403 + (CA)n Simple_repeat Simple_repeat 2 29 0 297 315 130 0 chr9 3624295 3624441 -114238186 + MIR3 SINE MIR 33 197 -11 313 281 30 85 chr9 3624475 3624627 -114238000 + L1ME3A LINE L1 5968 6108 -62 1731 204 66 75 chr9 3624627 3625186 -114237441 - MLT2B3 LTR ERVL 0 554 1 313 281 30 85 chr9 3625186 3625232 -114237395 + L1ME3A LINE L1 6108 6155 -15 2366 82 3 0 chr9 3625306 3625610 -114237017 + AluSg SINE Alu 1 305 -5 499 157 104 17 chr9 3625961 3626076 -114236551 - L1MC2 LINE L1 0 6344 6220 31403 108 10 59 chr9 3626256 3632705 -114229922 - L1PA7 LINE L1 -15 6139 12 1143 138 5 0 chr9 3632715 3632904 -114229723 - L1MC2 LINE L1 -108 6236 6047 6759 129 24 57 chr9 3632917 3633406 -114229221 - Tigger3b DNA MER2_type -1823 1205 701 1941 124 0 37 chr9 3633406 3633705 -114228922 + AluJb SINE Alu 1 288 -24 6759 129 24 57 chr9 3633705 3634461 -114228166 - Tigger3b DNA MER2_type -2327 701 1 1702 149 63 23 chr9 3634481 3634830 -114227797 - L1MC2 LINE L1 -339 6005 5643 2223 113 3 0 chr9 3634999 3635301 -114227326 + AluSg SINE Alu 1 303 -7 2244 98 0 7 chr9 3635647 3635944 -114226683 + AluSx SINE Alu 3 297 -15 366 345 91 0 chr9 3636548 3636713 -114225914 + MIR SINE MIR 49 228 -34 276 345 78 0 chr9 3636746 3636888 -114225739 + MIR SINE MIR 85 237 -25 770 177 0 0 chr9 3637907 3638031 -114224596 + AluSg/x SINE Alu 170 293 -19 846 237 71 0 chr9 3638556 3638754 -114223873 + MER58C DNA MER1_type 4 215 0 273 242 44 77 chr9 3639504 3639595 -114223032 + MER102b DNA MER1_type 254 341 0 4174 122 10 57 chr9 3639617 3640390 -114222237 + L1MB3 LINE L1 5440 6176 -7 193 333 0 0 chr9 3640445 3640493 -114222134 + MIR SINE MIR 49 96 -166 335 364 120 16 chr9 3640689 3641149 -114221478 - L2 LINE L2 -221 3051 2550 313 335 29 41 chr9 3641225 3641395 -114221232 + L2 LINE L2 2201 2368 -946 181 305 183 37 chr9 3641733 3641836 -114220791 + MIR SINE MIR 60 147 -115 533 247 114 6 chr9 3641836 3641994 -114220633 + MER5B DNA MER1_type 1 175 -3 181 305 183 37 chr9 3641994 3642054 -114220573 + MIR SINE MIR 147 247 -15 * 570 284 111 0 chr9 3642049 3642257 -114220370 - MIR SINE MIR 0 262 32 525 312 74 39 chr9 3644194 3644596 -114218031 - L2 LINE L2 -205 3108 2682 356 270 26 59 chr9 3644910 3645062 -114217565 + L1M4 LINE L1 3843 3989 -2157 1059 135 30 110 chr9 3645402 3645639 -114216988 - MER20 DNA MER1_type 0 219 2 1086 238 45 79 chr9 3645741 3646145 -114216482 - MLT1B LTR MaLR 0 390 1 377 328 65 14 chr9 3646284 3646854 -114215773 + L1M4 LINE L1 4151 4793 -1353 2418 67 0 3 chr9 3647065 3647365 -114215262 - AluY SINE Alu -12 299 1 336 325 33 8 chr9 3647474 3647594 -114215033 - L2 LINE L2 -703 2611 2489 3474 217 117 45 chr9 3647615 3648758 -114213869 - MER69B DNA AcHobo -1 1225 1 201 300 0 0 chr9 3648761 3648811 -114213816 - L2 LINE L2 -833 2481 2432 2689 218 65 37 chr9 3648885 3649661 -114212966 + L1MDb LINE L1 457 1389 -5020 1770 152 0 7 chr9 3649743 3650013 -114212614 + AluJb SINE Alu 1 268 -44 214 75 75 0 chr9 3650061 3650101 -114212526 + A-rich Low_complexity Low_complexity 6 48 0 2419 152 43 10 chr9 3650127 3650541 -114212086 + MSTA LTR MaLR 1 428 0 633 157 9 0 chr9 3650541 3650649 -114211978 + MSTA-int LTR MaLR 1 109 -1542 1581 156 0 8 chr9 3650649 3650893 -114211734 + MSTB LTR MaLR 185 426 0 1453 242 63 0 chr9 3650893 3651323 -114211304 + L1MDb LINE L1 1503 1959 -4447 889 189 0 0 chr9 3651326 3651479 -114211148 + FRAM SINE Alu 14 166 -10 2969 236 71 10 chr9 3651585 3652832 -114209795 + L1MDb LINE L1 2072 3379 -3027 2212 299 105 66 chr9 3652858 3654118 -114208509 + L2 LINE L2 984 2320 -994 1599 190 58 0 chr9 3654118 3654413 -114208214 + AluJb SINE Alu 1 312 0 2212 299 105 66 chr9 3654413 3654736 -114207891 + L2 LINE L2 2320 2629 -685 492 337 7 95 chr9 3655366 3655660 -114206967 + L3 LINE CR1 110 377 -1200 487 299 184 0 chr9 3655683 3655900 -114206727 - MIR SINE MIR 0 262 6 335 383 54 9 chr9 3655979 3656201 -114206426 + L3 LINE CR1 483 714 -863 2477 121 57 45 chr9 3656210 3656579 -114206048 + MSTA LTR MaLR 1 377 -51 1732 163 144 21 chr9 3656579 3656960 -114205667 + MSTA LTR MaLR 1 428 0 2477 121 57 45 chr9 3656960 3657013 -114205614 + MSTA LTR MaLR 377 428 0 193 239 137 34 chr9 3657013 3657130 -114205497 + L3 LINE CR1 724 852 -725 4852 28 11 0 chr9 3657136 3657708 -114204919 + L1PA4 LINE L1 5575 6152 -3 36 53 0 0 chr9 3658200 3658257 -114204370 + AT_rich Low_complexity Low_complexity 1 57 0 652 264 115 19 chr9 3658450 3658711 -114203916 + L3 LINE CR1 936 1221 -356 732 318 61 0 chr9 3658796 3659010 -114203617 + MIR SINE MIR 3 229 -33 2086 142 33 28 chr9 3659335 3659695 -114202932 + THE1B LTR MaLR 3 364 0 229 188 16 16 chr9 3660129 3660193 -114202434 - L1MDb LINE L1 -5440 969 906 1055 306 91 72 chr9 3660215 3660709 -114201918 - L2 LINE L2 -6 3307 2824 1646 167 47 0 chr9 3660709 3660985 -114201642 + AluJb SINE Alu 11 299 -13 1055 306 91 72 chr9 3660985 3661333 -114201294 - L2 LINE L2 -489 2824 2484 2490 63 0 0 chr9 3661333 3661632 -114200995 + AluY SINE Alu 1 299 -12 1055 306 91 72 chr9 3661632 3662003 -114200624 - L2 LINE L2 -829 2484 2058 330 302 213 0 chr9 3662234 3662403 -114200224 - L2 LINE L2 -1320 1994 1790 282 359 34 17 chr9 3662767 3662884 -114199743 - MIR3 SINE MIR -54 154 36 2459 63 7 3 chr9 3662990 3663293 -114199334 + AluY SINE Alu 1 304 -7 640 343 30 18 chr9 3663537 3663872 -114198755 + HERVL LTR ERVL 3569 3907 -1747 2037 146 21 29 chr9 3663872 3664250 -114198377 - THE1C LTR MaLR 0 375 1 1478 381 34 5 chr9 3664482 3665448 -114197179 + HERVL LTR ERVL 3962 4955 -699 613 263 120 31 chr9 3665859 3666113 -114196514 + LTR16A LTR ERVL 3 282 -175 813 196 0 0 chr9 3666115 3666258 -114196369 - FLAM_C SINE Alu 0 143 1 5211 175 90 0 chr9 3666625 3667561 -114195066 + LTR28 LTR ERV1 1 1020 0 23 33 0 0 chr9 3667576 3667606 -114195021 + AT_rich Low_complexity Low_complexity 1 30 0 507 165 31 0 chr9 3667854 3667951 -114194676 - L1M4 LINE L1 -539 5645 5546 210 91 0 0 chr9 3668422 3668455 -114194172 + (T)n Simple_repeat Simple_repeat 1 33 0 204 297 0 31 chr9 3669343 3669407 -114193220 - MER5A DNA MER1_type 0 189 128 25 0 0 0 chr9 3669437 3669462 -114193165 + AT_rich Low_complexity Low_complexity 1 25 0 258 240 8 104 chr9 3669669 3669794 -114192833 - L1MC/D LINE L1 -1921 5887 5775 390 293 24 16 chr9 3669805 3669928 -114192699 + MER5A DNA MER1_type 44 167 -22 404 278 59 53 chr9 3671196 3671365 -114191262 - MIR SINE MIR -87 175 6 220 238 0 32 chr9 3672086 3672149 -114190478 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 326 146 12 61 chr9 3673564 3673646 -114188981 - HAL1 LINE L1 0 2507 2430 4433 97 11 32 chr9 3673737 3674399 -114188228 - MER39B LTR ERV1 -1 652 5 255 291 6 55 chr9 3674445 3674610 -114188017 - L1MC5 LINE L1 -33 7928 7772 2034 252 68 43 chr9 3674629 3674914 -114187713 - L1ME3A LINE L1 -13 6157 5881 2490 87 3 0 chr9 3674914 3675226 -114187401 - AluSp SINE Alu 0 313 1 2034 252 68 43 chr9 3675226 3676564 -114186063 - L1ME3A LINE L1 -289 5881 4484 247 316 51 17 chr9 3676788 3676965 -114185662 - HAL1 LINE L1 -1198 1309 1127 243 0 0 0 chr9 3676980 3677007 -114185620 + (TA)n Simple_repeat Simple_repeat 1 27 0 5945 115 7 3 chr9 3677007 3678353 -114184274 - L1PA15 LINE L1 -10 7574 6223 4417 201 18 10 chr9 3678355 3679378 -114183249 - L1PA15 LINE L1 -1435 6130 5100 545 202 23 55 chr9 3679360 3679578 -114183049 - HAL1 LINE L1 -1341 1166 956 * 566 137 0 0 chr9 3679583 3679685 -114182942 - L1MA8 LINE L1 -7 6284 6183 787 277 68 10 chr9 3679710 3680122 -114182505 - L1ME3A LINE L1 -1678 4468 4033 1093 159 0 23 chr9 3680126 3680302 -114182325 - AluJb SINE Alu -140 172 1 16913 148 68 5 chr9 3680302 3681707 -114180920 - L1PA15 LINE L1 -4385 3180 1865 204 40 0 0 chr9 3681707 3681732 -114180895 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 16913 148 68 5 chr9 3681732 3683308 -114179319 - L1PA15 LINE L1 -5700 1865 11 17218 140 18 10 chr9 3683404 3686687 -114175940 - L1PA11 LINE L1 -2 7610 4286 2264 99 3 10 chr9 3686687 3686991 -114175636 - AluSg SINE Alu -8 302 1 17218 140 18 10 chr9 3686991 3687705 -114174922 - L1PA11 LINE L1 -3326 4286 3579 28613 120 11 57 chr9 3687718 3693753 -114168874 - L1PA7 LINE L1 -15 6139 426 219 36 0 0 chr9 3693753 3693781 -114168846 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 28613 120 11 57 chr9 3693781 3694178 -114168449 - L1PA7 LINE L1 -5728 426 12 4722 239 25 37 chr9 3694189 3696713 -114165914 - L1PA11 LINE L1 -3999 3585 7 827 244 41 51 chr9 3696724 3697114 -114165513 - L1M4 LINE L1 -951 5195 4810 652 256 122 48 chr9 3697117 3697684 -114164943 - L1MDb LINE L1 -5024 1194 630 362 367 66 15 chr9 3697748 3697944 -114164683 - L1MDb LINE L1 -5831 565 360 961 273 60 78 chr9 3698971 3699558 -114163069 + MER77 LTR ERV1 54 602 -3 825 217 38 79 chr9 3699566 3699946 -114162681 + MLT1A1 LTR MaLR 1 422 -6 757 179 0 0 chr9 3700528 3700651 -114161976 + FLAM_A SINE Alu 2 124 -9 519 260 8 0 chr9 3700810 3700937 -114161690 + MLT1L LTR MaLR 430 557 -58 195 129 0 0 chr9 3701187 3701218 -114161409 + (T)n Simple_repeat Simple_repeat 1 31 0 2036 98 7 11 chr9 3701221 3701498 -114161129 - AluSx SINE Alu 0 312 37 387 316 193 30 chr9 3702500 3702769 -114159858 - L3 LINE CR1 -85 1492 1180 348 316 72 24 chr9 3702861 3703234 -114159393 + L1MC4 LINE L1 7098 7488 -554 381 203 127 0 chr9 3703404 3703522 -114159105 + L1ME4a LINE L1 5977 6109 -12 250 387 34 42 chr9 3703574 3703812 -114158815 - L3 LINE CR1 -400 1177 942 502 316 17 11 chr9 3703869 3704043 -114158584 + MIR SINE MIR 87 261 -1 380 248 46 9 chr9 3705041 3705150 -114157477 - MLT1L LTR MaLR -339 276 164 2313 86 14 0 chr9 3705405 3705696 -114156931 - AluSx SINE Alu -17 295 1 270 355 118 0 chr9 3706226 3706319 -114156308 + MIR SINE MIR 31 134 -74 298 324 88 99 chr9 3706345 3706811 -114155816 - L2 LINE L2 0 3272 2812 207 162 0 0 chr9 3707353 3707390 -114155237 + CT-rich Low_complexity Low_complexity 3 39 0 1681 235 54 7 chr9 3708235 3708640 -114153987 + MER45B DNA AcHobo 1 424 -616 5242 120 24 14 chr9 3708640 3709589 -114153038 + L1MA8 LINE L1 5195 6154 -137 5864 110 12 0 chr9 3709601 3710550 -114152077 - L1PA8 LINE L1 -758 5388 4429 6002 68 2 9 chr9 3710550 3711331 -114151296 + L1PA8 LINE L1 5388 6492 -209 2304 107 0 3 chr9 3711331 3711640 -114150987 + AluSc SINE Alu 1 308 -1 6002 68 2 9 chr9 3711640 3711849 -114150778 + L1PA8 LINE L1 6492 6701 0 2689 164 91 2 chr9 3711857 3712404 -114150223 + MER45B DNA AcHobo 411 1006 -34 1045 45 8 0 chr9 3712481 3712613 -114150014 - L1PA7 LINE L1 -4 6150 6018 384 109 0 0 chr9 3712613 3712668 -114149959 + MER45B DNA AcHobo 984 1038 -2 1687 178 16 3 chr9 3712818 3713178 -114149449 + L1PB4 LINE L1 5812 6175 0 184 234 0 64 chr9 3713319 3713366 -114149261 + L2 LINE L2 3213 3256 -16 871 269 98 52 chr9 3713677 3714138 -114148489 - MLT1J LTR MaLR -8 503 22 2097 120 3 3 chr9 3714382 3714683 -114147944 - AluSx SINE Alu -6 306 6 376 330 28 0 chr9 3714797 3714906 -114147721 - MER5A DNA MER1_type -10 179 68 342 0 0 0 chr9 3716982 3717020 -114145607 + (TA)n Simple_repeat Simple_repeat 2 39 0 225 277 0 0 chr9 3718608 3718673 -114143954 + MLT1K LTR MaLR 519 583 -5 183 309 79 63 chr9 3718824 3718950 -114143677 - MIR SINE MIR 0 262 135 256 282 70 0 chr9 3719316 3719387 -114143240 - MIR SINE MIR -79 129 54 696 225 22 0 chr9 3719433 3719571 -114143056 - MER5A DNA MER1_type -29 160 20 24 32 0 0 chr9 3720419 3720450 -114142177 + AT_rich Low_complexity Low_complexity 1 31 0 1585 150 132 6 chr9 3720783 3721116 -114141511 + THE1C LTR MaLR 1 375 0 200 343 159 17 chr9 3721425 3721597 -114141030 - MIR3 SINE MIR -64 198 4 12765 180 40 47 chr9 3721615 3723508 -114139119 - L1MA4A LINE L1 0 7365 5460 180 0 0 0 chr9 3723508 3723528 -114139099 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 12765 180 40 47 chr9 3723528 3726196 -114136431 - L1MA4A LINE L1 -1905 5460 2646 1319 102 11 0 chr9 3726196 3726373 -114136254 - AluSp SINE Alu -3 310 132 12765 180 40 47 chr9 3726373 3728295 -114134332 - L1MA4A LINE L1 -4719 2646 712 1840 274 72 31 chr9 3728684 3729393 -114133234 - L1MA4A LINE L1 -6471 738 1 182 340 0 0 chr9 3729672 3729725 -114132902 - L2 LINE L2 0 3313 3261 301 200 60 184 chr9 3729768 3729953 -114132674 - MER5B DNA MER1_type 0 178 17 341 0 0 43 chr9 3730170 3730216 -114132411 + (CATTA)n Simple_repeat Simple_repeat 4 47 0 213 154 0 0 chr9 3730237 3730276 -114132351 + (TG)n Simple_repeat Simple_repeat 1 39 0 260 269 0 0 chr9 3730428 3730480 -114132147 - MIR3 SINE MIR -34 174 123 231 167 0 0 chr9 3731073 3731115 -114131512 + (CTG)n Simple_repeat Simple_repeat 1 42 0 477 300 170 0 chr9 3731462 3731662 -114130965 + MIR SINE MIR 29 262 0 416 244 64 32 chr9 3732123 3732279 -114130348 - MLT1J LTR MaLR -23 488 328 2239 109 7 7 chr9 3732686 3732990 -114129637 - AluSc SINE Alu -5 304 1 31 26 0 0 chr9 3733023 3733061 -114129566 + AT_rich Low_complexity Low_complexity 1 38 0 250 316 0 0 chr9 3733151 3733227 -114129400 + L1ME LINE L1 176 251 -5954 517 330 100 45 chr9 3733523 3734102 -114128525 + L1ME LINE L1 567 1177 -5028 489 304 35 3 chr9 3734128 3734417 -114128210 + L1ME LINE L1 1259 1556 -4840 207 0 0 0 chr9 3734451 3734474 -114128153 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1639 268 151 20 chr9 3734559 3736056 -114126571 + L1ME LINE L1 2169 3825 -2390 303 259 259 26 chr9 3736104 3736293 -114126334 + L1ME LINE L1 3998 4230 -1985 1796 107 40 10 chr9 3736294 3736593 -114126034 + L1PB2 LINE L1 5722 6037 -114 728 280 83 34 chr9 3736591 3737145 -114125482 + L1ME LINE L1 4569 5149 -1066 * 349 299 75 7 chr9 3738171 3738318 -114124309 + MIR SINE MIR 105 261 -1 1946 97 19 58 chr9 3738454 3738617 -114124010 - AluSg1 SINE Alu -9 300 132 239 0 0 31 chr9 3738617 3738649 -114123978 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 1946 97 19 58 chr9 3738649 3738665 -114123962 - AluSg1 SINE Alu -177 132 117 2604 33 0 0 chr9 3738665 3738969 -114123658 - AluYb8 SINE Alu -14 304 1 1946 97 19 58 chr9 3738969 3739099 -114123528 - AluSg1 SINE Alu -192 117 2 749 210 26 65 chr9 3739462 3739691 -114122936 + MER112 DNA MER1_type 1 220 -40 279 233 106 100 chr9 3740130 3740291 -114122336 - MIR SINE MIR -57 205 45 186 43 0 0 chr9 3740433 3740456 -114122171 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1560 200 82 43 chr9 3742449 3742935 -114119692 - MLT1D LTR MaLR 0 505 1 465 250 22 71 chr9 3743027 3743211 -114119416 - MER5B DNA MER1_type -3 175 1 273 198 0 0 chr9 3745608 3745689 -114116938 + (CA)n Simple_repeat Simple_repeat 1 81 0 260 286 58 39 chr9 3746011 3746217 -114116410 + LTR16B LTR ERVL 4 213 -251 497 246 128 45 chr9 3748163 3748561 -114114066 - L1ME4a LINE L1 -4 6117 5687 1594 278 154 88 chr9 3749794 3750843 -114111784 - L2 LINE L2 0 3313 2334 204 40 0 0 chr9 3750843 3750868 -114111759 + (GGAGA)n Simple_repeat Simple_repeat 2 26 0 1594 278 154 88 chr9 3750868 3751005 -114111622 - L2 LINE L2 -979 2334 2207 553 234 16 0 chr9 3751005 3751129 -114111498 + MER94 DNA DNA 9 134 0 1594 278 154 88 chr9 3751129 3751560 -114111067 - L2 LINE L2 -1106 2207 1442 251 281 157 0 chr9 3751968 3752054 -114110573 + MIR SINE MIR 55 149 -59 2214 120 0 0 chr9 3753003 3753302 -114109325 - AluSx SINE Alu -13 299 1 295 337 61 0 chr9 3754462 3754560 -114108067 - L2 LINE L2 0 3272 3169 21 0 0 0 chr9 3754560 3754581 -114108046 + AT_rich Low_complexity Low_complexity 1 21 0 2745 74 21 5 chr9 3754581 3754959 -114107668 - L1PA10 LINE L1 0 6168 5785 215 271 0 0 chr9 3755169 3755228 -114107399 - L2 LINE L2 -298 2974 2916 2359 98 0 0 chr9 3755246 3755541 -114107086 + AluSg SINE Alu 1 295 -15 32 26 0 0 chr9 3755580 3755619 -114107008 + AT_rich Low_complexity Low_complexity 1 39 0 1056 183 18 22 chr9 3755743 3755972 -114106655 + MER96B DNA MER1_type? 190 417 0 208 167 0 0 chr9 3756426 3756462 -114106165 + L2 LINE L2 3273 3308 -5 2259 116 0 3 chr9 3757735 3758045 -114104582 - AluSx SINE Alu -3 309 1 2306 99 0 10 chr9 3758410 3758714 -114103913 - AluSq SINE Alu -12 301 1 2701 194 98 17 chr9 3759397 3759439 -114103188 + MER63C DNA MER1_type 11 48 -1012 267 31 0 0 chr9 3759439 3759471 -114103156 + (CA)n Simple_repeat Simple_repeat 2 33 0 2701 194 98 17 chr9 3759471 3760181 -114102446 + MER63C DNA MER1_type 48 824 -106 938 201 6 0 chr9 3760181 3760345 -114102282 - FRAM SINE Alu -7 169 5 415 234 21 0 chr9 3760349 3760443 -114102184 + MER63C DNA MER1_type 817 912 -18 297 279 77 93 chr9 3760504 3760751 -114101876 + MLT1J LTR MaLR 1 243 -268 382 182 130 71 chr9 3760797 3760951 -114101676 - MLT1J2 LTR MaLR -22 428 266 863 200 12 0 chr9 3761114 3761284 -114101343 - Tigger1 DNA MER2_type -2246 172 1 1327 190 0 4 chr9 3761381 3761607 -114101020 + AluJo SINE Alu 84 308 -4 1606 159 36 47 chr9 3762398 3762678 -114099949 + AluJb SINE Alu 1 298 -14 21 0 0 0 chr9 3762678 3762699 -114099928 + AT_rich Low_complexity Low_complexity 1 21 0 2405 80 7 0 chr9 3762883 3763184 -114099443 - AluSq SINE Alu -10 303 1 245 259 0 0 chr9 3763754 3763808 -114098819 + (TG)n Simple_repeat Simple_repeat 2 55 0 879 201 6 22 chr9 3763808 3763835 -114098792 - MER45A DNA AcHobo -1404 177 151 7613 27 0 0 chr9 3763835 3765230 -114097397 + L1PA4 LINE L1 4757 6152 -3 879 201 6 22 chr9 3765230 3765381 -114097246 - MER45A DNA AcHobo -1430 151 2 344 306 27 55 chr9 3765568 3765751 -114096876 + MIR SINE MIR 56 233 -29 21 36 0 0 chr9 3766596 3766624 -114096003 + AT_rich Low_complexity Low_complexity 1 28 0 407 316 21 16 chr9 3767981 3768168 -114094459 + MER117 DNA MER1_type 10 197 0 221 277 121 48 chr9 3768318 3768484 -114094143 - MIR SINE MIR 0 262 85 284 102 20 0 chr9 3771571 3771620 -114091007 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 998 216 50 0 chr9 3772117 3772339 -114090288 - MIR SINE MIR -8 254 22 185 387 40 0 chr9 3772378 3772453 -114090174 - L3 LINE CR1 -92 1485 1408 685 269 97 36 chr9 3772552 3772942 -114089685 - LTR16C LTR ERVL -18 473 60 980 175 6 0 chr9 3773077 3773243 -114089384 + MER5A DNA MER1_type 1 167 -22 567 275 86 57 chr9 3773433 3773840 -114088787 - MLT1J LTR MaLR -23 488 70 2357 93 0 0 chr9 3775126 3775427 -114087200 + AluY SINE Alu 1 301 -10 735 272 68 36 chr9 3775896 3776146 -114086481 + MIR SINE MIR 4 261 -1 275 292 358 0 chr9 3776321 3776458 -114086169 - MER5A DNA MER1_type 0 189 4 291 306 150 25 chr9 3776471 3776631 -114085996 + MIR SINE MIR 53 232 -30 1807 127 33 7 chr9 3776726 3777063 -114085564 + AluSx SINE Alu 1 344 0 1150 224 37 104 chr9 3777312 3777688 -114084939 + L1MEc LINE L1 36 373 -6023 2185 92 3 10 chr9 3777688 3777992 -114084635 + AluSx SINE Alu 1 302 -10 1150 224 37 104 chr9 3777992 3778105 -114084522 + L1MEc LINE L1 373 492 -5904 910 228 0 0 chr9 3778106 3778264 -114084363 + FRAM SINE Alu 1 157 -19 1920 216 145 8 chr9 3778296 3778943 -114083684 + L1MEc LINE L1 518 1253 -5143 1459 216 62 55 chr9 3778944 3779023 -114083604 + L1MEc LINE L1 1759 1836 -4560 1869 176 3 6 chr9 3779023 3779336 -114083291 - AluJb SINE Alu 0 312 1 1459 216 62 55 chr9 3779336 3779488 -114083139 + L1MEc LINE L1 1836 1985 -4411 1884 185 0 6 chr9 3779488 3779802 -114082825 - AluJo SINE Alu 0 312 1 1459 216 62 55 chr9 3779802 3780134 -114082493 + L1MEc LINE L1 1985 2327 -4069 * 3397 231 57 65 chr9 3780132 3781480 -114081147 + L1MEc LINE L1 2966 4297 -1918 1657 105 24 0 chr9 3781480 3781728 -114080899 + L1PA10 LINE L1 5915 6168 0 3397 231 57 65 chr9 3781728 3782092 -114080535 + L1MEc LINE L1 4297 4663 -1552 18766 157 46 25 chr9 3782098 3788948 -114073679 + L1M1 LINE L1 18 7008 -713 288 0 0 0 chr9 3789243 3789275 -114073352 + (A)n Simple_repeat Simple_repeat 1 32 0 1438 243 130 18 chr9 3789655 3790302 -114072325 + L2 LINE L2 2565 3311 -2 214 167 0 0 chr9 3790782 3790818 -114071809 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 31 58 0 0 chr9 3790981 3791033 -114071594 + AT_rich Low_complexity Low_complexity 1 52 0 643 277 116 55 chr9 3791129 3791855 -114070772 - L1MC4 LINE L1 -143 7899 7130 351 44 0 0 chr9 3791857 3791902 -114070725 + (TG)n Simple_repeat Simple_repeat 2 46 0 878 248 28 88 chr9 3792051 3792293 -114070334 - L1MC4 LINE L1 -981 7061 6849 2179 118 7 0 chr9 3792293 3792582 -114070045 - AluSx SINE Alu -21 291 1 878 248 28 88 chr9 3792582 3792726 -114069901 - L1MC4 LINE L1 -1193 6849 6698 206 229 147 83 chr9 3792966 3793075 -114069552 - MIR SINE MIR -70 138 23 5332 156 14 6 chr9 3793150 3794845 -114067782 + L1PA15 LINE L1 4309 6164 -1 963 177 23 0 chr9 3794982 3795157 -114067470 + MER5A DNA MER1_type 8 186 -3 227 313 31 0 chr9 3795608 3795672 -114066955 + MIR SINE MIR 119 184 -78 310 344 81 12 chr9 3796197 3796444 -114066183 + L2 LINE L2 2199 2462 -852 319 220 11 33 chr9 3796635 3796726 -114065901 - MIR SINE MIR -1 261 173 217 345 116 34 chr9 3796690 3797042 -114065585 + L2 LINE L2 2672 3059 -213 * 383 354 186 11 chr9 3797295 3797676 -114064951 - L2 LINE L2 0 3272 2825 1866 164 7 0 chr9 3798021 3798331 -114064296 + AluSx SINE Alu 1 312 0 1659 160 19 0 chr9 3798557 3798826 -114063801 - AluSx SINE Alu -38 274 1 313 343 56 9 chr9 3799485 3799593 -114063034 - MIR3 SINE MIR -93 115 3 1498 196 31 10 chr9 3799840 3800131 -114062496 - AluJo SINE Alu -15 297 1 360 298 158 35 chr9 3800669 3800840 -114061787 + MIR3 SINE MIR 3 194 -14 1691 195 36 28 chr9 3801063 3801452 -114061175 - MSTD LTR MaLR -4 392 1 4248 127 46 29 chr9 3803217 3804570 -114058057 + pTR5 LTR ERV1 738 2438 0 364 267 59 0 chr9 3804711 3804812 -114057815 - MIR3 SINE MIR -15 193 87 2343 87 23 0 chr9 3805152 3805452 -114057175 - AluSq SINE Alu -6 307 1 243 88 0 0 chr9 3806080 3806114 -114056513 + (TG)n Simple_repeat Simple_repeat 2 35 0 617 309 168 23 chr9 3806472 3806870 -114055757 + L3 LINE CR1 1101 1556 -21 780 286 61 12 chr9 3807156 3807595 -114055032 - MLT1J LTR MaLR -23 488 7 22 35 0 0 chr9 3807770 3807799 -114054828 + AT_rich Low_complexity Low_complexity 1 29 0 282 338 135 24 chr9 3808515 3808722 -114053905 - MIR SINE MIR -16 246 17 246 183 9 148 chr9 3808906 3808962 -114053665 - MLT1L LTR MaLR -6 609 575 1147 170 5 0 chr9 3808962 3809150 -114053477 + MER5A DNA MER1_type 1 189 0 246 183 9 148 chr9 3809150 3809208 -114053419 - MLT1L LTR MaLR -40 575 511 591 269 36 5 chr9 3809324 3809517 -114053110 - MLT1L LTR MaLR -289 326 128 369 308 38 8 chr9 3810619 3810752 -114051875 + MIR3 SINE MIR 49 185 -23 542 254 37 0 chr9 3810809 3810943 -114051684 + MIR SINE MIR 47 185 -77 618 193 107 0 chr9 3811201 3811351 -114051276 - MER5A DNA MER1_type -10 179 14 402 299 21 35 chr9 3811363 3811507 -114051120 - MER5A DNA MER1_type -28 161 20 281 237 0 118 chr9 3812019 3812112 -114050515 - MIR SINE MIR 0 262 181 1498 139 12 8 chr9 3812356 3812600 -114050027 + THE1B LTR MaLR 120 364 0 1045 266 39 53 chr9 3812629 3813043 -114049584 + MER20B DNA MER1_type 100 507 -276 296 279 0 0 chr9 3813055 3813134 -114049493 + (TA)n Simple_repeat Simple_repeat 1 79 0 886 246 14 7 chr9 3813207 3813483 -114049144 + MER20B DNA MER1_type 505 782 -1 325 350 72 6 chr9 3814052 3814232 -114048395 - MIR SINE MIR -50 212 21 763 270 178 14 chr9 3814496 3814918 -114047709 + MLT1H1 LTR MaLR 32 522 -33 189 0 0 0 chr9 3815283 3815304 -114047323 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 757 142 0 0 chr9 3815307 3815413 -114047214 - AluSx SINE Alu -23 289 184 1354 95 5 37 chr9 3815495 3815685 -114046942 - AluSx SINE Alu -128 184 1 357 291 56 56 chr9 3817312 3817563 -114045064 + L2 LINE L2 2271 2521 -793 1866 146 17 0 chr9 3817987 3818289 -114044338 + AluSx SINE Alu 1 307 -5 744 199 8 0 chr9 3818414 3818545 -114044082 - FLAM_A SINE Alu -1 132 1 1180 270 81 18 chr9 3818935 3819331 -114043296 + L1ME3A LINE L1 5486 5906 -264 2332 80 22 14 chr9 3819332 3819681 -114042946 + LTR7 LTR ERV1 1 448 -2 338 209 82 77 chr9 3819723 3819919 -114042708 + L1ME3A LINE L1 5903 6099 -71 1706 152 35 7 chr9 3819941 3820224 -114042403 - AluJb SINE Alu -21 291 1 249 108 0 0 chr9 3820302 3820339 -114042288 + (GA)n Simple_repeat Simple_repeat 2 38 0 583 114 13 0 chr9 3821687 3821766 -114040861 + MADE1 DNA Mariner 1 80 0 250 161 70 119 chr9 3821846 3821989 -114040638 - L1ME4a LINE L1 -11 6110 5975 2177 132 3 0 chr9 3823419 3823730 -114038897 - AluSx SINE Alu 0 312 1 26 0 0 0 chr9 3823730 3823756 -114038871 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr9 3824418 3824460 -114038167 + AT_rich Low_complexity Low_complexity 1 42 0 2262 77 3 46 chr9 3824990 3825315 -114037312 - AluY SINE Alu 0 311 1 1741 176 137 56 chr9 3825705 3826172 -114036455 - MLT1D LTR MaLR 0 505 1 212 263 0 0 chr9 3826529 3826586 -114036041 + (CATA)n Simple_repeat Simple_repeat 4 60 0 499 289 19 120 chr9 3826614 3826720 -114035907 - L2 LINE L2 -199 3114 2999 2236 125 0 0 chr9 3826720 3827023 -114035604 + AluSx SINE Alu 1 303 -9 499 289 19 120 chr9 3827023 3827182 -114035445 - L2 LINE L2 -314 2999 2876 941 245 54 113 chr9 3827269 3827845 -114034782 + MER34 LTR ERV1 1 542 0 240 287 298 0 chr9 3827931 3828025 -114034602 - MIR SINE MIR -115 147 26 384 194 87 0 chr9 3828371 3828474 -114034153 + MER104 DNA Tc2 6 117 -63 1909 114 13 40 chr9 3830704 3831002 -114031625 + AluSx SINE Alu 1 290 -22 310 171 126 54 chr9 3832106 3832217 -114030410 + LTR41 LTR ERVL 5 123 -650 3105 168 42 32 chr9 3832268 3832883 -114029744 - L1MB7 LINE L1 -42 6142 5522 722 249 37 11 chr9 3832884 3833073 -114029554 - MLT1A2 LTR MaLR 0 374 181 1963 288 53 80 chr9 3833089 3834103 -114028524 - L1M4 LINE L1 -1299 4847 3807 270 0 0 0 chr9 3834103 3834133 -114028494 + (TTA)n Simple_repeat Simple_repeat 3 32 0 1982 122 3 14 chr9 3834140 3834428 -114028199 - AluSc SINE Alu -24 285 1 1963 288 53 80 chr9 3834428 3835091 -114027536 - L1M4 LINE L1 -2345 3801 3209 642 190 50 50 chr9 3835129 3835308 -114027319 + LTR41 LTR ERVL 585 763 -10 289 344 21 91 chr9 3835339 3835769 -114026858 + L2 LINE L2 2533 2932 -382 989 313 56 36 chr9 3836294 3836795 -114025832 - LTR33 LTR ERVL -8 513 3 22 35 0 0 chr9 3836839 3836868 -114025759 + AT_rich Low_complexity Low_complexity 1 29 0 331 213 0 0 chr9 3837588 3837649 -114024978 - L2 LINE L2 -1 3271 3211 316 328 50 0 chr9 3837980 3838099 -114024528 - MIR SINE MIR -108 154 30 192 186 0 47 chr9 3838322 3838365 -114024262 + L2 LINE L2 3229 3269 -3 977 220 113 50 chr9 3839234 3839598 -114023029 + LTR33A LTR ERVL 137 523 0 788 283 75 24 chr9 3839981 3840274 -114022353 - MLT1K LTR MaLR -4 584 277 405 399 0 0 chr9 3840452 3840590 -114022037 + MIR3 SINE MIR 19 156 -52 180 262 0 0 chr9 3840770 3840812 -114021815 + MIR3 SINE MIR 150 191 -17 202 264 43 71 chr9 3841762 3841902 -114020725 - L2 LINE L2 -188 3084 2949 1193 288 48 32 chr9 3842016 3842784 -114019843 + L2 LINE L2 2522 3306 -7 851 244 11 0 chr9 3844380 3844556 -114018071 - MER5A DNA MER1_type -5 184 7 599 250 62 82 chr9 3844797 3845041 -114017586 - MLT1K LTR MaLR -2 586 348 332 371 16 8 chr9 3847528 3847652 -114014975 - MIR SINE MIR -63 145 21 573 197 28 35 chr9 3848890 3849032 -114013595 + MER5B DNA MER1_type 35 175 -3 403 292 78 31 chr9 3849033 3849219 -114013408 + MIR SINE MIR 35 227 -35 1655 149 8 4 chr9 3849509 3849771 -114012856 + AluSx SINE Alu 32 294 -18 22 35 0 0 chr9 3849772 3849801 -114012826 + AT_rich Low_complexity Low_complexity 1 29 0 319 161 0 0 chr9 3849864 3849920 -114012707 - Alu SINE Alu -1 299 244 2918 6 0 0 chr9 3850079 3850390 -114012237 + AluY SINE Alu 1 311 0 245 326 57 17 chr9 3850406 3850581 -114012046 - MLT1J LTR MaLR 0 511 330 802 296 93 51 chr9 3850899 3851406 -114011221 - LTR67 LTR ERVL 0 557 30 242 139 0 0 chr9 3851480 3851516 -114011111 - MIR SINE MIR -62 146 111 434 280 70 33 chr9 3851523 3851794 -114010833 + L1MC4a LINE L1 5629 5909 -1899 1708 130 7 29 chr9 3851917 3852194 -114010433 + Tigger5 DNA MER2_type 2052 2322 -1 309 51 0 0 chr9 3852205 3852244 -114010383 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 200 104 32 chr9 3852254 3852379 -114010248 + L1ME4a LINE L1 5985 6118 -3 201 191 0 24 chr9 3853788 3853830 -114008797 + T-rich Low_complexity Low_complexity 2 42 0 699 250 101 48 chr9 3853972 3854220 -114008407 + MIR SINE MIR 2 262 0 180 183 14 42 chr9 3854927 3854938 -114007689 + CT-rich Low_complexity Low_complexity 4 14 -58 1259 225 78 52 chr9 3854938 3855324 -114007303 - MSTD LTR MaLR 0 396 1 180 183 14 42 chr9 3855324 3855383 -114007244 + CT-rich Low_complexity Low_complexity 14 72 0 596 132 9 0 chr9 3855473 3855579 -114007048 + C-rich Low_complexity Low_complexity 5 111 0 2604 86 44 17 chr9 3856019 3856381 -114006246 - THE1C LTR MaLR 0 375 4 10152 98 46 47 chr9 3856384 3857654 -114004973 - THE1C-int LTR MaLR 0 1580 310 2357 127 48 20 chr9 3857654 3858008 -114004619 + THE1B LTR MaLR 1 364 0 12584 93 4 0 chr9 3858008 3859582 -114003045 + THE1B-int LTR MaLR 1 1580 0 2203 145 54 20 chr9 3859582 3859934 -114002693 + THE1B LTR MaLR 1 364 0 10152 98 46 47 chr9 3859934 3860243 -114002384 - THE1C-int LTR MaLR -1267 313 1 2944 96 5 16 chr9 3860245 3860622 -114002005 - THE1C LTR MaLR -2 373 1 266 197 28 155 chr9 3861025 3861167 -114001460 + LTR67 LTR ERVL 434 557 0 2803 136 13 75 chr9 3862101 3862624 -114000003 + L1MB3 LINE L1 5693 6183 0 415 276 104 8 chr9 3862921 3863055 -113999572 - MIR SINE MIR -65 197 51 257 366 67 8 chr9 3864376 3864510 -113998117 + MIR3 SINE MIR 19 160 -48 182 37 37 0 chr9 3865971 3865998 -113996629 + (CAATT)n Simple_repeat Simple_repeat 1 28 0 368 243 54 45 chr9 3866005 3866116 -113996511 - L2 LINE L2 -22 3250 3139 686 184 171 13 chr9 3866887 3867045 -113995582 + MER5A DNA MER1_type 7 189 0 184 195 0 24 chr9 3867045 3867084 -113995543 - MIR SINE MIR -64 198 161 213 277 0 0 chr9 3867315 3867362 -113995265 + (CACG)n Simple_repeat Simple_repeat 1 47 0 183 129 0 0 chr9 3867802 3867833 -113994794 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 183 200 60 60 chr9 3867909 3867959 -113994668 + L2 LINE L2 3222 3271 -1 1257 278 75 63 chr9 3868976 3869119 -113993508 - L1ME3A LINE L1 -144 6262 6122 2020 152 66 23 chr9 3869119 3869468 -113993159 + MER47A DNA MER2_type 2 365 -1 1257 278 75 63 chr9 3869468 3869600 -113993027 - L1ME3A LINE L1 -284 6122 5993 16839 146 35 8 chr9 3869600 3869957 -113992670 + Tigger4(Zombi) DNA MER2_type 1 347 -2384 195 100 0 0 chr9 3869957 3869987 -113992640 + (TTG)n Simple_repeat Simple_repeat 1 30 0 16839 146 35 8 chr9 3869987 3872290 -113990337 + Tigger4(Zombi) DNA MER2_type 347 2731 0 1257 278 75 63 chr9 3872290 3872545 -113990082 - L1ME3A LINE L1 -413 5993 5743 1354 156 138 86 chr9 3872545 3872733 -113989894 - MER2 DNA MER2_type 0 344 129 1691 133 94 0 chr9 3872733 3873010 -113989617 + AluSx SINE Alu 5 305 0 1354 156 138 86 chr9 3873010 3873147 -113989480 - MER2 DNA MER2_type -215 129 1 1257 278 75 63 chr9 3873147 3874453 -113988174 - L1ME3A LINE L1 -663 5743 4402 26 21 0 42 chr9 3874629 3874644 -113987983 + AT_rich Low_complexity Low_complexity 1 15 -31 2524 38 0 0 chr9 3874644 3874934 -113987693 - AluY SINE Alu -21 290 1 26 21 0 42 chr9 3874934 3874966 -113987661 + AT_rich Low_complexity Low_complexity 15 46 0 552 267 74 20 chr9 3875130 3875332 -113987295 + MLT1I LTR MaLR 3 215 -194 518 258 60 56 chr9 3875472 3876047 -113986580 - L1ME3A LINE L1 -3518 2864 2287 344 290 44 47 chr9 3876033 3876630 -113985997 - HAL1b LINE L1 -885 1165 1077 * 236 286 60 23 chr9 3877497 3877630 -113984997 - L1M4 LINE L1 -1978 4168 4031 1227 42 56 0 chr9 3877936 3878080 -113984547 - L1PA8 LINE L1 -14 6158 6007 290 276 81 0 chr9 3879704 3879791 -113982836 - MIR SINE MIR -77 185 92 188 348 73 39 chr9 3880159 3880337 -113982290 + MIR3 SINE MIR 15 198 -10 2861 72 119 5 chr9 3880345 3880747 -113981880 - LTR7 LTR ERV1 -2 448 1 2254 107 62 16 chr9 3880747 3881120 -113981507 - HERVH LTR ERV1 0 7713 7324 1390 134 19 0 chr9 3881120 3881336 -113981291 - HERVH LTR ERV1 -1894 5819 5600 3808 145 2 2 chr9 3881340 3881912 -113980715 - HERVH LTR ERV1 -2567 5146 4575 1334 104 0 0 chr9 3881909 3882092 -113980535 - HERVH LTR ERV1 -3043 4670 4488 * 6451 69 2 2 chr9 3882094 3882948 -113979679 - HERVH LTR ERV1 -3720 3993 3140 * 16180 92 21 25 chr9 3882934 3885810 -113976817 - HERVH LTR ERV1 -4721 2992 1 2638 73 128 5 chr9 3885812 3886211 -113976416 - LTR7 LTR ERV1 -2 448 1 2491 248 65 44 chr9 3886848 3887525 -113975102 - MER115 DNA AcHobo 0 693 3 213 39 0 0 chr9 3888031 3888057 -113974570 + (CA)n Simple_repeat Simple_repeat 2 27 0 360 0 0 0 chr9 3888129 3888169 -113974458 + (TG)n Simple_repeat Simple_repeat 1 40 0 401 306 91 39 chr9 3888482 3888714 -113973913 + LTR16A LTR ERVL 201 444 -6 310 184 0 105 chr9 3888805 3888881 -113973746 + L2 LINE L2 3246 3313 0 2435 162 77 46 chr9 3889398 3889986 -113972641 - L1MB4 LINE L1 -6 6174 5569 528 239 34 0 chr9 3890047 3890164 -113972463 - MER103 DNA DNA -44 122 2 295 239 27 133 chr9 3890339 3890527 -113972100 + L2 LINE L2 2917 3084 -188 371 266 40 102 chr9 3890607 3890784 -113971843 - MER5A DNA MER1_type -12 177 12 203 170 21 0 chr9 3890851 3890898 -113971729 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 185 234 0 0 chr9 3890902 3890949 -113971678 + MIR3 SINE MIR 121 167 -41 1545 176 54 57 chr9 3891916 3892252 -113970375 + MER58B DNA MER1_type 6 340 -1 1035 254 86 84 chr9 3892327 3892885 -113969742 - L1ME3A LINE L1 -75 6095 5537 234 0 0 0 chr9 3893056 3893082 -113969545 + (A)n Simple_repeat Simple_repeat 1 26 0 201 39 0 0 chr9 3893832 3893858 -113968769 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr9 3894366 3894387 -113968240 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 3894759 3894781 -113967846 + AT_rich Low_complexity Low_complexity 1 22 0 367 353 85 34 chr9 3898188 3898599 -113964028 - L2 LINE L2 -338 2976 2545 318 294 105 14 chr9 3899885 3900028 -113962599 + MIR SINE MIR 107 262 0 803 327 55 35 chr9 3900738 3901334 -113961293 + L1ME4a LINE L1 5309 5916 -205 847 192 66 6 chr9 3901435 3901617 -113961010 + MIR SINE MIR 7 199 -63 48 77 0 0 chr9 3901621 3901725 -113960902 + AT_rich Low_complexity Low_complexity 1 104 0 1135 168 73 0 chr9 3903791 3903982 -113958645 + MER3 DNA MER1_type 5 209 0 272 302 16 48 chr9 3905078 3905204 -113957423 + MIR SINE MIR 135 256 -6 376 301 62 0 chr9 3905274 3905387 -113957240 - L2 LINE L2 -34 3279 3160 5001 150 53 15 chr9 3906682 3907529 -113955098 + L1MC1 LINE L1 5449 6327 -6 618 278 0 13 chr9 3907542 3907693 -113954934 + L2 LINE L2 3165 3313 0 343 309 82 31 chr9 3908918 3909112 -113953515 - MIR SINE MIR -6 256 53 194 343 187 6 chr9 3909450 3909616 -113953011 + MIR SINE MIR 49 244 -18 375 245 68 54 chr9 3910767 3910914 -113951713 + MIR SINE MIR 6 154 -108 2042 130 0 0 chr9 3911637 3911922 -113950705 + AluSg SINE Alu 1 285 -25 223 265 163 31 chr9 3912086 3912184 -113950443 + MER5A DNA MER1_type 35 145 -44 238 237 51 17 chr9 3913012 3913071 -113949556 - L2 LINE L2 -3 3310 3250 551 300 119 83 chr9 3914246 3914766 -113947861 + L1MC4a LINE L1 5373 5677 -444 261 182 0 0 chr9 3915156 3915211 -113947416 + (CA)n Simple_repeat Simple_repeat 2 56 0 609 288 79 14 chr9 3915292 3915507 -113947120 + MIR SINE MIR 2 230 -32 284 278 121 10 chr9 3915737 3915850 -113946777 + MIR SINE MIR 28 159 -49 2044 129 0 0 chr9 3916347 3916678 -113945949 + AluSx SINE Alu 1 331 0 2385 92 0 3 chr9 3917664 3917978 -113944649 + AluSq SINE Alu 1 313 0 180 182 0 0 chr9 3918693 3918726 -113943901 - MIR SINE MIR -107 155 123 393 343 9 23 chr9 3918854 3919070 -113943557 + MLT1J LTR MaLR 217 429 -82 2178 119 0 3 chr9 3919071 3919366 -113943261 + AluSx SINE Alu 1 294 -18 280 287 47 62 chr9 3920120 3920418 -113942209 + L2 LINE L2 2785 3078 -194 2109 134 0 7 chr9 3921306 3921611 -113941016 + AluSx SINE Alu 1 303 -9 1735 168 25 14 chr9 3922371 3922656 -113939971 + AluJo SINE Alu 1 288 -24 247 350 121 7 chr9 3922846 3922986 -113939641 - L2 LINE L2 -2 3311 3156 208 331 221 17 chr9 3922982 3923163 -113939464 - MIR SINE MIR -13 249 32 * 399 191 56 0 chr9 3923184 3923273 -113939354 - L1ME4a LINE L1 -65 6056 5963 589 221 61 31 chr9 3923340 3923503 -113939124 - MER104 DNA Tc2 -4 176 9 233 254 111 71 chr9 3923613 3923739 -113938888 + L2 LINE L2 3142 3272 0 2308 86 0 26 chr9 3923986 3924289 -113938338 - AluY SINE Alu -16 295 1 219 339 95 37 chr9 3924925 3925114 -113937513 - L2 LINE L2 -122 3150 2951 459 0 0 0 chr9 3928796 3928847 -113933780 + (CA)n Simple_repeat Simple_repeat 2 52 0 2443 84 7 0 chr9 3929439 3929748 -113932879 + AluY SINE Alu 1 311 0 219 349 18 37 chr9 3930072 3930181 -113932446 + MIR SINE MIR 21 127 -135 508 306 79 24 chr9 3930238 3930490 -113932137 - L2 LINE L2 0 3313 3048 4583 72 19 60 chr9 3930741 3931409 -113931218 + L1PA10 LINE L1 5528 6168 0 324 273 127 11 chr9 3931533 3931651 -113930976 - MIR3 SINE MIR -3 205 73 295 291 87 44 chr9 3935573 3935779 -113926848 - L2 LINE L2 0 3313 3099 976 71 16 0 chr9 3935788 3935914 -113926713 + AluY SINE Alu 165 292 -19 983 275 83 48 chr9 3935938 3936537 -113926090 - L2 LINE L2 -244 3069 2445 215 61 30 0 chr9 3936667 3936700 -113925927 + (TTG)n Simple_repeat Simple_repeat 2 35 0 399 113 0 0 chr9 3937160 3937222 -113925405 + (TG)n Simple_repeat Simple_repeat 1 62 0 476 300 52 67 chr9 3938353 3938563 -113924064 + L2 LINE L2 3030 3236 -36 252 0 0 0 chr9 3938711 3938739 -113923888 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 367 69 49 chr9 3939182 3939487 -113923140 - L2 LINE L2 -47 3225 2915 2086 177 61 34 chr9 3939639 3939868 -113922759 + L1MA4A LINE L1 2729 2950 -3353 2177 134 19 46 chr9 3939868 3940240 -113922387 - THE1B LTR MaLR 0 364 3 12426 98 4 4 chr9 3940242 3941823 -113920804 - THE1B-int LTR MaLR 0 1580 1 1913 150 33 46 chr9 3941825 3942192 -113920435 - THE1B LTR MaLR -2 362 1 2086 177 61 34 chr9 3942192 3942998 -113919629 + L1MA4A LINE L1 2950 6121 -182 462 189 0 27 chr9 3943009 3943120 -113919507 + L1MA4A LINE L1 6195 6302 -1 5099 168 38 15 chr9 3943416 3944259 -113918368 + MER21B LTR ERV1 1 862 -1 1210 237 18 85 chr9 3945547 3946041 -113916586 + L1MC4 LINE L1 7431 7891 -151 410 176 12 0 chr9 3946079 3946164 -113916463 + GA-rich Low_complexity Low_complexity 2 87 0 187 146 49 0 chr9 3946279 3946320 -113916307 + GA-rich Low_complexity Low_complexity 2 44 0 280 205 27 98 chr9 3946321 3946433 -113916194 + L1MC4 LINE L1 7939 8042 0 260 267 11 33 chr9 3946464 3946554 -113916073 - MIR SINE MIR -136 126 39 252 321 83 90 chr9 3947042 3947619 -113915008 + L2 LINE L2 2271 2843 -471 356 399 70 38 chr9 3947675 3948016 -113914611 + L2 LINE L2 2916 3267 -5 246 308 66 0 chr9 3951676 3951767 -113910860 - L2 LINE L2 -3 3269 3173 229 239 0 0 chr9 3951872 3951918 -113910709 - LTR16C LTR ERVL -257 234 189 223 245 19 0 chr9 3954120 3954173 -113908454 - MER5A DNA MER1_type -127 62 9 326 300 0 58 chr9 3954294 3954414 -113908213 - MIR SINE MIR -116 146 34 424 220 165 55 chr9 3955454 3955672 -113906955 + MIR SINE MIR 21 262 0 652 234 18 80 chr9 3959266 3959492 -113903135 - MER58C DNA MER1_type 0 215 4 427 291 200 0 chr9 3960131 3960306 -113902321 - MIR SINE MIR -19 243 34 212 0 36 0 chr9 3960353 3960381 -113902246 + (CAA)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr9 3960701 3960728 -113901899 + (GGA)n Simple_repeat Simple_repeat 3 29 0 1641 170 28 28 chr9 3961036 3961324 -113901303 + AluJo SINE Alu 13 300 -12 1127 101 63 0 chr9 3962561 3962720 -113899907 - L1PA13 LINE L1 -10 6153 5985 815 131 12 101 chr9 3963312 3963480 -113899147 + MER5A DNA MER1_type 23 175 -14 2142 110 0 13 chr9 3965989 3966289 -113896338 + AluSx SINE Alu 3 298 -14 27 29 0 0 chr9 3967039 3967073 -113895554 + AT_rich Low_complexity Low_complexity 1 34 0 651 319 129 21 chr9 3969331 3969758 -113892869 - L2 LINE L2 -2 3311 2839 243 266 138 83 chr9 3969803 3970246 -113892381 + L1ME LINE L1 5352 5818 -303 703 217 32 28 chr9 3970681 3970898 -113891729 + LTR7 LTR ERV1 233 450 0 747 251 55 5 chr9 3970920 3971119 -113891508 - MER63A DNA MER1_type -1 209 1 466 161 301 0 chr9 3972191 3972334 -113890293 - MER5A DNA MER1_type -2 187 2 813 247 171 28 chr9 3973183 3973539 -113889088 - L2 LINE L2 0 3313 2907 1480 168 33 97 chr9 3973722 3974146 -113888481 + MLT2C1 LTR ERVL 1 397 0 270 333 207 0 chr9 3974338 3974488 -113888139 - MIR SINE MIR -80 182 2 2272 67 0 58 chr9 3974580 3974893 -113887734 - AluY SINE Alu -16 295 1 954 289 179 39 chr9 3975530 3976243 -113886384 - L2 LINE L2 -239 3074 2247 342 0 0 0 chr9 3977209 3977247 -113885380 + (CA)n Simple_repeat Simple_repeat 2 39 0 496 248 117 9 chr9 3977258 3977472 -113885155 + LTR16A1 LTR ERVL 217 453 -4 407 359 37 23 chr9 3977707 3977924 -113884703 - L3 LINE CR1 -19 1558 1339 219 36 0 0 chr9 3978296 3978324 -113884303 + (T)n Simple_repeat Simple_repeat 1 28 0 771 154 70 6 chr9 3979397 3979553 -113883074 + MER3 DNA MER1_type 1 166 -43 279 240 60 130 chr9 3979588 3979788 -113882839 - L3 LINE CR1 -99 1478 1293 1565 203 7 11 chr9 3979932 3980234 -113882393 - AluJo SINE Alu 0 312 13 402 297 61 12 chr9 3980292 3980457 -113882170 + MIR SINE MIR 76 248 -14 308 309 127 27 chr9 3980455 3980675 -113881952 - L3 LINE CR1 -369 1208 967 * 446 48 0 16 chr9 3980684 3980746 -113881881 + (TTCC)n Simple_repeat Simple_repeat 1 61 0 346 320 0 10 chr9 3980750 3980850 -113881777 - L2 LINE L2 -18 3295 3197 549 316 47 19 chr9 3981209 3981421 -113881206 + MIR SINE MIR 36 253 -9 463 273 80 17 chr9 3981574 3981750 -113880877 + MIR SINE MIR 6 192 -70 1770 158 0 67 chr9 3983732 3984062 -113878565 - AluJo SINE Alu -4 308 1 1492 199 130 31 chr9 3987888 3988304 -113874323 + LTR40b LTR ERVL 3 459 -3 353 333 44 7 chr9 3988851 3988986 -113873641 + MIR3 SINE MIR 5 144 -64 374 0 0 0 chr9 3988987 3989030 -113873597 - L1PA13 LINE L1 -211 5952 5910 * 1538 99 37 4 chr9 3989005 3989292 -113873335 + L1PA13 LINE L1 5913 6207 0 2585 56 0 0 chr9 3989596 3989898 -113872729 - AluY SINE Alu -9 302 1 22 0 0 0 chr9 3990205 3990227 -113872400 + AT_rich Low_complexity Low_complexity 1 22 0 251 247 114 63 chr9 3990867 3991025 -113871602 - MIR SINE MIR -19 243 78 288 0 0 0 chr9 3991519 3991551 -113871076 + (CA)n Simple_repeat Simple_repeat 2 33 0 236 350 63 0 chr9 3991689 3991832 -113870795 + L1ME LINE L1 5669 5820 -301 645 327 156 21 chr9 3992280 3992754 -113869873 + L3 LINE CR1 47 584 -993 417 93 0 0 chr9 3993481 3993535 -113869092 + AluS SINE Alu 21 74 -238 2520 163 133 9 chr9 3995006 3995192 -113867435 + MER6A DNA MER2_type 1 163 -702 231 114 0 0 chr9 3995192 3995227 -113867400 + (TG)n Simple_repeat Simple_repeat 1 35 0 2520 163 133 9 chr9 3995227 3995573 -113867054 + MER6A DNA MER2_type 163 599 -6 2306 88 10 3 chr9 3995828 3996135 -113866492 - AluY SINE Alu -2 309 1 183 250 0 0 chr9 3996174 3996226 -113866401 + CT-rich Low_complexity Low_complexity 1 52 0 1934 118 33 26 chr9 3996226 3996530 -113866097 - AluSx SINE Alu -6 306 1 646 275 75 32 chr9 3996567 3996847 -113865780 + L2 LINE L2 3022 3313 0 266 267 33 22 chr9 3996979 3997069 -113865558 - MER103 DNA DNA -68 98 8 437 290 58 39 chr9 4001213 4001368 -113861259 + L3 LINE CR1 1417 1574 -3 1126 125 0 34 chr9 4002787 4002963 -113859664 - AluSq SINE Alu -19 294 125 207 0 0 0 chr9 4003300 4003323 -113859304 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 229 303 0 53 chr9 4003612 4003688 -113858939 - L2 LINE L2 -37 3276 3205 2335 110 3 0 chr9 4004004 4004314 -113858313 - AluSx SINE Alu -1 311 1 22 0 0 0 chr9 4005588 4005610 -113857017 + AT_rich Low_complexity Low_complexity 1 22 0 519 333 75 50 chr9 4009076 4009514 -113853113 + HAL1b LINE L1 236 684 -664 680 193 93 7 chr9 4010543 4010693 -113851934 + MER5A DNA MER1_type 2 164 -25 328 310 124 8 chr9 4010730 4010859 -113851768 + MER91B DNA MER1_type 46 189 -1 207 0 0 0 chr9 4010959 4010982 -113851645 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 739 70 18 26 chr9 4010984 4011098 -113851529 - L1HS LINE L1 -5 6150 6038 22 35 0 0 chr9 4011449 4011478 -113851149 + AT_rich Low_complexity Low_complexity 1 29 0 180 286 27 129 chr9 4012247 4012394 -113850233 + MER5A DNA MER1_type 48 179 -10 * 420 246 179 30 chr9 4012281 4012415 -113850212 - MER5A DNA MER1_type -32 157 4 1290 216 78 35 chr9 4014346 4014744 -113847883 - MSTB2 LTR MaLR 0 457 43 518 298 153 55 chr9 4015521 4015940 -113846687 + L2 LINE L2 2810 3269 -3 232 224 20 0 chr9 4018464 4018513 -113844114 + MIR SINE MIR 212 261 -1 532 219 16 24 chr9 4018546 4018669 -113843958 - MIR SINE MIR -105 157 36 198 294 15 44 chr9 4019276 4019344 -113843283 + L2 LINE L2 3246 3311 -2 1250 307 115 7 chr9 4019523 4020259 -113842368 + L2 LINE L2 2251 3061 -211 35 24 0 0 chr9 4021182 4021224 -113841403 + AT_rich Low_complexity Low_complexity 1 42 0 465 50 0 0 chr9 4021447 4021507 -113841120 + (CA)n Simple_repeat Simple_repeat 2 61 0 265 250 62 0 chr9 4022133 4022197 -113840430 + L2 LINE L2 3179 3246 -26 412 240 10 21 chr9 4022402 4022498 -113840129 - MER5A DNA MER1_type -84 105 11 324 0 0 0 chr9 4023366 4023402 -113839225 + (TC)n Simple_repeat Simple_repeat 2 37 0 243 0 0 0 chr9 4023401 4023428 -113839199 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 219 152 0 0 chr9 4023439 4023485 -113839142 + (CA)n Simple_repeat Simple_repeat 1 46 0 183 290 120 50 chr9 4023802 4023902 -113838725 - MIR SINE MIR -60 148 42 276 100 0 0 chr9 4025636 4025676 -113836951 + (A)n Simple_repeat Simple_repeat 1 40 0 252 0 0 0 chr9 4026235 4026263 -113836364 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 216 306 88 64 chr9 4027894 4028135 -113834492 - MIR3 SINE MIR -14 248 1 327 355 57 21 chr9 4028179 4028320 -113834307 - L2 LINE L2 -5 3267 3122 1905 168 0 42 chr9 4028658 4029039 -113833588 + MLT1A1 LTR MaLR 1 365 0 459 301 106 17 chr9 4029041 4029277 -113833350 + L2 LINE L2 2699 2955 -359 1506 138 6 114 chr9 4029366 4029477 -113833150 + MLT1B LTR MaLR 69 190 -200 1985 116 53 0 chr9 4029477 4029762 -113832865 + AluSx SINE Alu 1 300 -12 1506 138 6 114 chr9 4029762 4030011 -113832616 + MLT1B LTR MaLR 190 390 0 494 286 79 26 chr9 4030029 4030218 -113832409 + L2 LINE L2 3115 3313 0 1780 173 0 46 chr9 4031530 4031854 -113830773 + AluJo SINE Alu 1 309 -3 181 352 0 70 chr9 4034547 4034618 -113828009 + MIR SINE MIR 32 97 -165 2432 82 3 0 chr9 4034791 4035097 -113827530 - AluSx SINE Alu -1 311 5 258 291 12 47 chr9 4035539 4035625 -113827002 + MER5A DNA MER1_type 6 88 -101 433 262 21 48 chr9 4035686 4035831 -113826796 + L2 LINE L2 3171 3311 -2 2009 78 81 3 chr9 4036121 4036405 -113826222 + AluSx SINE Alu 1 306 -6 620 235 31 15 chr9 4036412 4036608 -113826019 - L1MB7 LINE L1 -10 6174 5976 237 33 0 0 chr9 4036619 4036649 -113825978 + (A)n Simple_repeat Simple_repeat 1 30 0 2282 117 3 0 chr9 4036830 4037138 -113825489 + AluSx SINE Alu 2 310 -2 253 321 6 13 chr9 4037234 4037393 -113825234 + L1MC4a LINE L1 5775 5932 -1876 261 259 74 30 chr9 4038263 4038398 -113824229 - L1ME3A LINE L1 -5 6165 6025 450 165 132 0 chr9 4040167 4040258 -113822369 + MER20 DNA MER1_type 116 218 -1 656 161 0 32 chr9 4040559 4040745 -113821882 + GA-rich Low_complexity Low_complexity 1 180 0 1228 243 118 17 chr9 4042606 4043014 -113819613 - MER77 LTR ERV1 -3 602 154 239 210 170 30 chr9 4043056 4043156 -113819471 - MER77 LTR ERV1 -438 167 54 432 0 0 0 chr9 4046403 4046451 -113816176 + (A)n Simple_repeat Simple_repeat 1 48 0 258 286 97 45 chr9 4047946 4048215 -113814412 - L1ME3A LINE L1 -117 6004 5722 245 260 10 30 chr9 4048220 4048320 -113814307 + (TA)n Simple_repeat Simple_repeat 1 98 0 1010 152 73 0 chr9 4048515 4048706 -113813921 - MER2 DNA MER2_type -134 211 7 288 219 0 14 chr9 4049093 4049166 -113813461 + MIR SINE MIR 61 132 -130 217 231 29 77 chr9 4049135 4049239 -113813388 + L2 LINE L2 2993 3091 -181 * 442 272 76 86 chr9 4049369 4049659 -113812968 - L2 LINE L2 -3 3310 3024 314 239 97 18 chr9 4049920 4050033 -113812594 - MIR3 SINE MIR -76 132 11 186 43 0 0 chr9 4050421 4050444 -113812183 + (TTC)n Simple_repeat Simple_repeat 2 24 0 287 229 324 17 chr9 4051063 4051242 -113811385 + L2 LINE L2 3008 3241 -31 2313 113 25 19 chr9 4052638 4053000 -113809627 + THE1B LTR MaLR 1 364 0 4878 99 4 3 chr9 4053000 4053708 -113808919 + THE1B-int LTR MaLR 1 709 -871 4350 102 16 0 chr9 4053706 4054324 -113808303 + THE1B-int LTR MaLR 953 1580 0 * 1348 141 16 25 chr9 4054324 4054566 -113808061 + THE1B LTR MaLR 1 240 -124 1331 133 14 9 chr9 4054559 4054777 -113807850 + THE1B LTR MaLR 146 364 0 * 26 0 0 0 chr9 4054828 4054854 -113807773 + AT_rich Low_complexity Low_complexity 1 26 0 1732 164 7 18 chr9 4054855 4055141 -113807486 - AluJb SINE Alu -29 283 1 3230 195 52 46 chr9 4056321 4057113 -113805514 + L1MD2 LINE L1 653 1439 -4967 2302 107 16 0 chr9 4057113 4057421 -113805206 + AluSq SINE Alu 1 313 0 3230 195 52 46 chr9 4057421 4057663 -113804964 + L1MD2 LINE L1 1439 1678 -4728 580 144 18 0 chr9 4057663 4057774 -113804853 - L1MA9 LINE L1 -4 6308 6196 3230 195 52 46 chr9 4057774 4058056 -113804571 + L1MD2 LINE L1 1678 1949 -4457 4378 202 50 13 chr9 4058213 4059753 -113802874 + L1MD2 LINE L1 5009 6595 -24 2562 59 0 0 chr9 4061377 4061683 -113800944 - AluY SINE Alu -5 306 1 216 91 23 45 chr9 4063163 4063207 -113799420 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 333 268 89 8 chr9 4063360 4063483 -113799144 - L1ME4a LINE L1 -241 5880 5748 760 212 118 6 chr9 4063654 4063824 -113798803 - MER5A DNA MER1_type 0 189 1 269 106 64 0 chr9 4063845 4063892 -113798735 + U5 snRNA snRNA 1 50 -66 812 308 68 51 chr9 4064442 4065670 -113796957 + L1MDa LINE L1 4 1252 -4867 380 338 125 10 chr9 4065707 4066043 -113796584 + L1MDa LINE L1 1407 1691 -863 652 307 92 10 chr9 4066219 4066730 -113795897 + L1ME3A LINE L1 2958 3510 -2636 2218 71 7 24 chr9 4066759 4067054 -113795573 + AluSp SINE Alu 1 290 -23 266 0 0 29 chr9 4067059 4067094 -113795533 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 317 258 207 35 chr9 4067194 4067652 -113794975 + L1ME3A LINE L1 3712 4248 -1898 1212 290 67 41 chr9 4067696 4069125 -113793502 - L1MC4 LINE L1 -864 6944 5479 742 286 52 44 chr9 4069132 4069650 -113792977 + L1ME3A LINE L1 4325 4846 -1300 547 289 35 39 chr9 4069674 4069986 -113792641 + L1ME3A LINE L1 5647 5957 -213 22 70 0 0 chr9 4070167 4070210 -113792417 + AT_rich Low_complexity Low_complexity 1 43 0 354 348 166 7 chr9 4070300 4070711 -113791916 + L2 LINE L2 2722 3186 -86 241 370 65 0 chr9 4070720 4070828 -113791799 - L2 LINE L2 -9 3263 3149 2339 166 67 34 chr9 4071652 4072129 -113790498 + MLT1D LTR MaLR 13 505 0 332 274 68 75 chr9 4072374 4072604 -113790023 + MLT1L LTR MaLR 107 391 -193 899 137 0 0 chr9 4072791 4072908 -113789719 + FLAM_C SINE Alu 1 117 -16 233 378 96 22 chr9 4073702 4073837 -113788790 - L2 LINE L2 -12 3260 3116 227 238 188 20 chr9 4074422 4074523 -113788104 - MIR SINE MIR -7 255 138 347 232 49 0 chr9 4074907 4074989 -113787638 + L1MC/D LINE L1 5567 5652 -469 294 273 10 20 chr9 4075017 4075116 -113787511 + (CATA)n Simple_repeat Simple_repeat 1 98 0 840 255 48 0 chr9 4075132 4075340 -113787287 + MIR SINE MIR 2 219 -43 303 217 83 24 chr9 4075390 4075492 -113787135 + L1MC/D LINE L1 5712 5820 -301 225 0 0 0 chr9 4075998 4076023 -113786604 + (A)n Simple_repeat Simple_repeat 1 25 0 364 332 93 21 chr9 4076260 4076453 -113786174 - MIR SINE MIR -36 226 20 523 303 40 34 chr9 4078476 4078651 -113783976 - MIR3 SINE MIR -21 187 12 585 188 255 0 chr9 4079674 4079823 -113782804 - MER20 DNA MER1_type -2 217 31 727 301 35 13 chr9 4079880 4080109 -113782518 + MIR SINE MIR 9 242 -20 285 310 41 47 chr9 4080134 4080305 -113782322 + MLT2E LTR ERVL 41 210 -418 228 304 29 29 chr9 4080428 4080530 -113782097 + MLT2E LTR ERVL 520 621 -7 193 269 39 39 chr9 4080977 4081055 -113781572 - L2 LINE L2 -52 3220 3143 211 364 50 8 chr9 4081865 4081986 -113780641 + L2 LINE L2 3146 3271 -1 2158 122 0 0 chr9 4082453 4082748 -113779879 - AluSq SINE Alu 0 313 19 187 265 0 20 chr9 4083236 4083285 -113779342 + L2 LINE L2 3213 3260 -12 206 264 0 83 chr9 4083589 4083661 -113778966 + MER91A DNA MER1_type 2 67 -129 1935 184 38 63 chr9 4083991 4084448 -113778179 + MLT1C LTR MaLR 6 467 0 352 284 9 18 chr9 4084448 4084557 -113778070 - MIR3 SINE MIR -42 166 59 313 271 148 63 chr9 4084583 4084867 -113777760 - L2 LINE L2 -1 3312 3005 2353 101 0 3 chr9 4085299 4085606 -113777021 + AluSx SINE Alu 1 306 -6 212 147 0 0 chr9 4087836 4087870 -113774757 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 203 263 11 63 chr9 4088976 4089071 -113773556 - MIR SINE MIR -133 129 40 796 239 73 121 chr9 4089153 4089414 -113773213 - L2 LINE L2 -6 3307 3078 1509 164 21 76 chr9 4089414 4089744 -113772883 - AluJo SINE Alu 0 312 1 796 239 73 121 chr9 4089744 4089963 -113772664 - L2 LINE L2 -235 3078 2850 293 0 27 0 chr9 4089982 4090019 -113772608 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 294 73 0 0 chr9 4090843 4090884 -113771743 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 448 290 27 39 chr9 4091783 4091974 -113770653 - MIR SINE MIR -25 237 46 2020 224 50 32 chr9 4092212 4092778 -113769849 + L1ME1 LINE L1 5584 6159 -7 25 31 0 0 chr9 4092840 4092872 -113769755 + AT_rich Low_complexity Low_complexity 1 32 0 339 222 81 40 chr9 4093481 4093580 -113769047 + MER5C DNA MER1_type 21 123 -201 240 192 0 0 chr9 4093724 4093776 -113768851 + MER5C DNA MER1_type 270 321 -3 387 316 121 16 chr9 4094448 4094638 -113767989 + L2 LINE L2 3016 3225 -47 2161 108 7 10 chr9 4094660 4094966 -113767661 + AluSx SINE Alu 1 305 -7 2099 121 0 0 chr9 4095074 4095379 -113767248 - AluSc SINE Alu -4 305 1 189 0 0 0 chr9 4096221 4096242 -113766385 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 321 292 186 6 chr9 4096510 4096671 -113765956 - MIR SINE MIR -48 214 25 204 40 0 0 chr9 4096697 4096722 -113765905 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 494 273 74 51 chr9 4097828 4098044 -113764583 + MIR SINE MIR 28 248 -14 652 232 82 1 chr9 4098190 4098405 -113764222 - L1ME3A LINE L1 -7 6155 5929 7132 109 34 9 chr9 4099014 4100407 -113762220 - L1MA1 LINE L1 -4 6298 4863 4186 168 42 9 chr9 4100592 4101355 -113761272 + L1MB5 LINE L1 5386 6173 -1 40 37 0 0 chr9 4102131 4102185 -113760442 + AT_rich Low_complexity Low_complexity 1 54 0 2408 70 3 3 chr9 4102546 4102846 -113759781 - AluY SINE Alu -11 300 1 324 366 41 0 chr9 4102847 4102970 -113759657 - MER115 DNA AcHobo -175 518 391 740 345 9 4 chr9 4103019 4103248 -113759379 - MER115 DNA AcHobo -413 280 51 425 264 28 9 chr9 4103253 4103359 -113759268 + MER5A DNA MER1_type 7 114 -75 234 0 0 0 chr9 4103558 4103584 -113759043 + (A)n Simple_repeat Simple_repeat 1 26 0 1347 201 30 30 chr9 4103655 4103923 -113758704 + AluJb SINE Alu 23 290 -22 451 311 122 31 chr9 4104821 4105043 -113757584 - MIR SINE MIR -20 242 1 313 307 62 22 chr9 4106678 4106857 -113755770 + MIR SINE MIR 21 206 -56 710 285 60 4 chr9 4106929 4107161 -113755466 + MIR SINE MIR 2 252 -10 347 0 23 0 chr9 4107235 4107278 -113755349 + (CA)n Simple_repeat Simple_repeat 1 44 0 475 328 39 6 chr9 4109199 4109379 -113753248 - MIR3 SINE MIR -3 205 20 598 209 99 41 chr9 4110551 4110723 -113751904 + MER5A DNA MER1_type 1 182 -7 249 151 19 38 chr9 4110833 4110886 -113751741 - MER5B DNA MER1_type 0 178 127 630 233 5 87 chr9 4110887 4111093 -113751534 + MER20 DNA MER1_type 31 219 0 2808 139 90 25 chr9 4111321 4111845 -113750782 + LTR64 LTR ERVK 1 558 0 2084 103 3 14 chr9 4115039 4115330 -113747297 - AluSg SINE Alu -22 288 1 1284 335 159 23 chr9 4115505 4116623 -113746004 + L3 LINE CR1 105 1374 -203 2151 148 56 8 chr9 4116714 4117072 -113745555 + THE1C LTR MaLR 1 375 0 234 349 70 0 chr9 4117281 4117367 -113745260 - L2 LINE L2 -48 3224 3133 7177 52 1 1 chr9 4119303 4120303 -113742324 + L1PA6 LINE L1 5161 6154 0 2972 177 34 16 chr9 4122017 4122627 -113740000 - L1MB5 LINE L1 -9 6165 5545 1884 163 7 3 chr9 4122648 4122942 -113739685 - AluSx SINE Alu -17 295 1 455 232 20 0 chr9 4123189 4123288 -113739339 + L2 LINE L2 3141 3241 -31 22 0 0 0 chr9 4123397 4123419 -113739208 + AT_rich Low_complexity Low_complexity 1 22 0 286 321 47 0 chr9 4123904 4124010 -113738617 + L2 LINE L2 3188 3298 -15 210 262 24 24 chr9 4126275 4126359 -113736268 + GA-rich Low_complexity Low_complexity 1 84 0 576 221 15 113 chr9 4126538 4126733 -113735894 - MER91B DNA MER1_type -14 176 1 834 230 6 11 chr9 4126863 4127041 -113735586 + MER45A DNA AcHobo 1 177 -1 732 268 114 21 chr9 4128155 4128396 -113734231 - L1MCc LINE L1 -4889 1534 1242 2343 87 0 7 chr9 4128396 4128705 -113733922 + AluY SINE Alu 5 311 0 732 268 114 21 chr9 4128705 4128848 -113733779 - L1MCc LINE L1 -5181 1242 1114 234 0 0 0 chr9 4129498 4129524 -113733103 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 411 21 0 0 chr9 4129523 4129571 -113733056 + (GA)n Simple_repeat Simple_repeat 1 48 0 231 103 73 0 chr9 4130085 4130153 -113732474 + T-rich Low_complexity Low_complexity 3 75 0 210 37 0 0 chr9 4130153 4130180 -113732447 + (G)n Simple_repeat Simple_repeat 1 27 0 205 286 0 0 chr9 4130209 4130279 -113732348 + G-rich Low_complexity Low_complexity 1 70 0 358 249 83 5 chr9 4130372 4130531 -113732096 - L1 LINE L1 -2945 3201 3027 192 47 47 23 chr9 4130531 4130574 -113732053 + (TTTTTG)n Simple_repeat Simple_repeat 4 47 0 1948 58 8 0 chr9 4130574 4130835 -113731792 - L1PA5 LINE L1 -153 6001 5739 418 252 49 34 chr9 4131800 4131992 -113730635 + MIR SINE MIR 17 205 -57 2370 89 0 7 chr9 4132003 4132306 -113730321 + AluY SINE Alu 1 301 -10 268 277 18 9 chr9 4132763 4132875 -113729752 + L1 LINE L1 3796 3908 -2238 442 325 101 38 chr9 4133403 4133769 -113728858 + L1 LINE L1 4790 5178 -968 1300 132 10 29 chr9 4133908 4134112 -113728515 + AluSx SINE Alu 44 243 -69 309 345 81 43 chr9 4134248 4134457 -113728170 + L3 LINE CR1 48 264 -1313 596 252 5 48 chr9 4135960 4136166 -113726461 + LTR41 LTR ERVL 1 197 -576 21 95 0 0 chr9 4136557 4136620 -113726007 + AT_rich Low_complexity Low_complexity 1 63 0 25 65 0 0 chr9 4136627 4136673 -113725954 + AT_rich Low_complexity Low_complexity 1 46 0 304 203 63 0 chr9 4136674 4136753 -113725874 + LTR50 LTR ERVL 712 795 0 324 286 71 42 chr9 4137186 4137497 -113725130 + HAL1b LINE L1 399 718 -630 216 97 0 0 chr9 4138184 4138215 -113724412 + (TG)n Simple_repeat Simple_repeat 2 32 0 298 281 39 55 chr9 4138278 4138406 -113724221 - MIR3 SINE MIR -10 198 73 273 197 0 0 chr9 4139838 4139904 -113722723 + (TG)n Simple_repeat Simple_repeat 1 66 0 205 171 0 24 chr9 4139942 4139983 -113722644 + (TG)n Simple_repeat Simple_repeat 2 41 0 190 222 111 16 chr9 4142002 4142065 -113720562 - L3 LINE CR1 -1204 373 305 334 320 79 28 chr9 4142642 4142820 -113719807 - MER5A DNA MER1_type -1 188 2 384 204 82 61 chr9 4143092 4143239 -113719388 + MIR SINE MIR 103 252 -10 281 313 37 37 chr9 4144205 4144339 -113718288 - MIR3 SINE MIR -9 199 66 185 0 40 0 chr9 4144448 4144473 -113718154 + (CAA)n Simple_repeat Simple_repeat 2 27 0 666 185 37 0 chr9 4144473 4144608 -113718019 + L1MA10 LINE L1 6180 6319 -15 2060 83 3 31 chr9 4144644 4144957 -113717670 + AluY SINE Alu 1 305 0 1476 228 19 60 chr9 4144990 4145517 -113717110 + L1ME2 LINE L1 5665 6333 -1 360 379 52 6 chr9 4145591 4145765 -113716862 + L3 LINE CR1 893 1074 -503 1669 183 0 7 chr9 4146132 4146422 -113716205 + AluJb SINE Alu 1 288 -24 333 320 26 16 chr9 4146491 4146685 -113715942 - L1ME LINE L1 -353 5768 5573 369 291 99 7 chr9 4146689 4146840 -113715787 + L3 LINE CR1 1092 1256 -321 370 240 132 8 chr9 4146930 4147059 -113715568 + LTR50 LTR ERVL 12 156 -639 563 171 257 22 chr9 4147089 4147320 -113715307 + LTR50 LTR ERVL 228 634 -161 394 145 72 0 chr9 4147353 4147436 -113715191 + LTR50 LTR ERVL 705 793 -2 201 392 21 10 chr9 4147438 4147535 -113715092 + L3 LINE CR1 1435 1532 -45 205 330 121 0 chr9 4148617 4148708 -113713919 - MIR SINE MIR -102 160 59 201 74 0 0 chr9 4149102 4149129 -113713498 + (A)n Simple_repeat Simple_repeat 1 27 0 368 256 13 0 chr9 4149580 4149658 -113712969 - L2 LINE L2 0 3272 3194 1407 187 33 19 chr9 4149662 4150026 -113712601 - MER96B DNA MER1_type? 0 417 49 504 227 143 14 chr9 4150700 4151016 -113711611 + MLT1J2 LTR MaLR 63 450 0 343 195 93 8 chr9 4152610 4152728 -113709899 - MER117 DNA MER1_type -23 174 47 237 402 0 8 chr9 4152793 4152910 -113709717 - MIR3 SINE MIR -16 192 77 351 0 0 0 chr9 4153590 4153629 -113708998 + (CA)n Simple_repeat Simple_repeat 2 40 0 2258 139 38 12 chr9 4155039 4155456 -113707171 + MSTA LTR MaLR 1 428 0 373 327 108 75 chr9 4155623 4155984 -113706643 + L2 LINE L2 2900 3272 0 201 222 19 19 chr9 4157600 4157654 -113704973 + GA-rich Low_complexity Low_complexity 1 54 0 204 303 40 61 chr9 4157729 4157828 -113704799 + L2 LINE L2 3168 3264 -8 303 319 42 25 chr9 4158076 4158195 -113704432 - L2 LINE L2 -4 3309 3189 24 0 0 0 chr9 4158934 4158958 -113703669 + AT_rich Low_complexity Low_complexity 1 24 0 1516 166 69 42 chr9 4159012 4159301 -113703326 + AluJo SINE Alu 1 297 -15 23 0 0 0 chr9 4159920 4159943 -113702684 + AT_rich Low_complexity Low_complexity 1 23 0 204 296 0 42 chr9 4160076 4160147 -113702480 + MIR SINE MIR 14 81 -181 566 274 121 21 chr9 4160349 4160539 -113702088 + MIR SINE MIR 4 212 -50 1717 172 0 40 chr9 4160541 4160843 -113701784 + AluJo SINE Alu 1 290 -22 21 36 0 0 chr9 4160914 4160942 -113701685 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr9 4160981 4161016 -113701611 + (CA)n Simple_repeat Simple_repeat 2 36 0 395 169 96 0 chr9 4161036 4161119 -113701508 - Tigger3b DNA MER2_type 0 1232 1142 973 98 93 27 chr9 4161128 4161311 -113701316 + THE1C LTR MaLR 181 375 0 * 5083 132 56 33 chr9 4161311 4161621 -113701006 - Tigger3b DNA MER2_type -2008 1020 719 2062 84 0 4 chr9 4161621 4161882 -113700745 - AluY SINE Alu -13 298 39 5083 132 56 33 chr9 4161882 4162568 -113700059 - Tigger3b DNA MER2_type -2309 719 1 831 172 28 0 chr9 4162580 4162725 -113699902 - MIR SINE MIR -112 150 2 24 32 0 0 chr9 4163242 4163273 -113699354 + AT_rich Low_complexity Low_complexity 1 31 0 311 282 26 43 chr9 4163704 4163821 -113698806 + L1ME LINE L1 5448 5562 -559 2281 79 9 3 chr9 4164361 4164691 -113697936 - L1MA5A LINE L1 0 6297 5966 485 284 102 49 chr9 4165220 4165445 -113697182 - MIR SINE MIR -6 256 20 1938 142 0 0 chr9 4166198 4166507 -113696120 + AluSx SINE Alu 1 309 0 1675 153 63 137 chr9 4168619 4169123 -113693504 - MLT1C LTR MaLR 0 467 1 293 211 9 114 chr9 4169407 4169521 -113693106 + MIR SINE MIR 90 191 -71 294 294 104 51 chr9 4170531 4170736 -113691891 + MIR SINE MIR 9 212 -50 871 225 18 31 chr9 4171912 4172134 -113690493 + MER20 DNA MER1_type 1 219 0 25 0 0 0 chr9 4172167 4172192 -113690435 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr9 4172696 4172717 -113689910 + AT_rich Low_complexity Low_complexity 1 21 0 1737 244 175 38 chr9 4173448 4174293 -113688334 + L2 LINE L2 2064 3022 -291 632 222 26 31 chr9 4176708 4176902 -113685725 + MLT1J2 LTR MaLR 1 193 -257 230 239 256 26 chr9 4176929 4177046 -113685581 + MLT1J2 LTR MaLR 266 409 -41 287 196 0 72 chr9 4177317 4177414 -113685213 - L1MC5 LINE L1 -30 7931 7842 390 325 149 48 chr9 4179193 4179608 -113683019 + L2 LINE L2 2816 3272 0 330 294 71 8 chr9 4179651 4179777 -113682850 - MER94 DNA DNA 0 134 1 21 36 0 0 chr9 4181351 4181379 -113681248 + AT_rich Low_complexity Low_complexity 1 28 0 556 194 276 0 chr9 4181947 4182081 -113680546 + MER5B DNA MER1_type 6 176 -2 402 328 67 36 chr9 4182545 4183011 -113679616 - L1ME3 LINE L1 -238 5924 5445 358 308 122 65 chr9 4187434 4187957 -113674670 - L1M2 LINE L1 -5481 1368 816 198 286 36 36 chr9 4188722 4188778 -113673849 - L2 LINE L2 -12 3260 3205 193 349 45 0 chr9 4190844 4190910 -113671717 + L2 LINE L2 3235 3303 -10 378 0 0 0 chr9 4191089 4191131 -113671496 + (CA)n Simple_repeat Simple_repeat 2 43 0 648 266 87 57 chr9 4192656 4193347 -113669280 + L1ME4a LINE L1 5415 6119 -2 223 260 117 0 chr9 4194261 4194338 -113668289 - MIR SINE MIR -66 142 57 234 105 0 0 chr9 4195086 4195124 -113667503 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr9 4195665 4195693 -113666934 + AT_rich Low_complexity Low_complexity 1 28 0 206 300 29 0 chr9 4196661 4196731 -113665896 - MIR SINE MIR -79 129 58 459 218 143 0 chr9 4197408 4197555 -113665072 - MER104 DNA Tc2 -3 177 10 344 311 0 30 chr9 4197598 4197733 -113664894 + L2 LINE L2 2936 3066 -206 263 261 148 106 chr9 4198659 4198801 -113663826 + MIR SINE MIR 2 149 -113 2562 116 57 7 chr9 4198816 4199223 -113663404 + MSTA LTR MaLR 1 427 -1 8671 166 23 4 chr9 4199225 4200826 -113661801 + MSTA-int LTR MaLR 15 1645 -6 2432 142 54 5 chr9 4200831 4201239 -113661388 + MSTA LTR MaLR 1 428 0 285 307 59 50 chr9 4201239 4201340 -113661287 + MIR SINE MIR 161 262 0 23 0 0 0 chr9 4201511 4201534 -113661093 + AT_rich Low_complexity Low_complexity 1 23 0 240 320 68 19 chr9 4202039 4202142 -113660485 - L2 LINE L2 -24 3248 3141 279 213 12 25 chr9 4202189 4202269 -113660358 - MER116 DNA Mariner -1 79 1 654 214 26 7 chr9 4202310 4202464 -113660163 + MIR SINE MIR 50 206 -56 362 214 401 6 chr9 4202640 4202822 -113659805 - L1MC4 LINE L1 -146 7896 7643 777 190 107 19 chr9 4202957 4203162 -113659465 + MIR SINE MIR 13 235 -27 450 0 0 0 chr9 4203294 4203344 -113659283 + (CA)n Simple_repeat Simple_repeat 2 51 0 278 250 48 73 chr9 4203900 4204059 -113658568 + MIR SINE MIR 49 212 -50 23 0 0 0 chr9 4204688 4204711 -113657916 + AT_rich Low_complexity Low_complexity 1 23 0 324 261 26 17 chr9 4205885 4206000 -113656627 + MER103 DNA DNA 4 119 -47 262 225 31 132 chr9 4206308 4206437 -113656190 - MER5B DNA MER1_type 0 178 63 846 238 8 10 chr9 4208065 4208295 -113654332 + MIR SINE MIR 20 247 -15 195 237 0 0 chr9 4208766 4208804 -113653823 + L2 LINE L2 3231 3268 -4 1678 138 43 72 chr9 4209066 4209413 -113653214 - MER1B DNA MER1_type 0 337 1 1593 165 0 0 chr9 4209568 4209822 -113652805 + AluJb SINE Alu 59 312 0 2300 99 0 3 chr9 4210265 4210568 -113652059 - AluSq SINE Alu -11 302 1 21 0 0 0 chr9 4212111 4212132 -113650495 + AT_rich Low_complexity Low_complexity 1 21 0 2068 150 23 51 chr9 4212541 4212701 -113649926 - L1MA9 LINE L1 0 6312 6149 180 77 0 0 chr9 4212701 4212727 -113649900 + (TG)n Simple_repeat Simple_repeat 2 27 0 2068 150 23 51 chr9 4212727 4212753 -113649874 - L1MA9 LINE L1 -163 6149 6124 2489 75 7 0 chr9 4212753 4213060 -113649567 + AluSx SINE Alu 1 309 -3 2068 150 23 51 chr9 4213060 4213305 -113649322 - L1MA9 LINE L1 -188 6124 5892 197 226 28 19 chr9 4215152 4215258 -113647369 + CT-rich Low_complexity Low_complexity 2 108 0 22 0 0 0 chr9 4217284 4217306 -113645321 + AT_rich Low_complexity Low_complexity 1 22 0 215 275 52 136 chr9 4217690 4218116 -113644511 + L2 LINE L2 2859 3248 -24 201 156 0 0 chr9 4218570 4218602 -113644025 + (CTA)n Simple_repeat Simple_repeat 1 32 0 327 285 85 15 chr9 4218662 4218792 -113643835 - MIR SINE MIR -14 248 110 180 111 0 0 chr9 4219319 4219346 -113643281 + (ATG)n Simple_repeat Simple_repeat 2 28 0 185 250 0 0 chr9 4219972 4220016 -113642611 + L2 LINE L2 3212 3255 -17 620 270 55 0 chr9 4220168 4220331 -113642296 - MIR3 SINE MIR -3 205 34 226 269 224 13 chr9 4221675 4221831 -113640796 + L3 LINE CR1 1370 1558 -19 345 288 54 18 chr9 4221958 4222069 -113640558 + MIR3 SINE MIR 83 197 -11 371 269 234 19 chr9 4222121 4222418 -113640209 + L1ME4a LINE L1 4224 4596 -1550 960 200 41 45 chr9 4222418 4222638 -113639989 - MER20 DNA MER1_type 0 219 1 371 269 234 19 chr9 4222638 4222660 -113639967 + L1ME4a LINE L1 4596 4612 -1534 2085 133 0 0 chr9 4222750 4223036 -113639591 + AluSx SINE Alu 1 286 -26 1143 276 100 39 chr9 4223258 4223819 -113638808 - MLT1G1 LTR MaLR 0 595 1 301 292 118 6 chr9 4223923 4224084 -113638543 + L1ME4a LINE L1 5120 5298 -848 335 254 62 68 chr9 4224325 4224502 -113638125 + L1ME4a LINE L1 5736 5911 -210 824 185 21 48 chr9 4225176 4225365 -113637262 - MER5A DNA MER1_type -5 184 1 788 189 7 7 chr9 4226324 4226467 -113636160 + MER5A DNA MER1_type 1 143 -46 519 337 71 68 chr9 4228158 4228568 -113634059 - L2 LINE L2 -65 3248 2838 218 287 130 37 chr9 4228597 4228705 -113633922 + L2 LINE L2 3151 3268 -4 2299 122 0 0 chr9 4228905 4229216 -113633411 + AluSx SINE Alu 1 311 -1 1407 156 30 117 chr9 4230430 4230763 -113631864 + AluJo SINE Alu 1 304 -8 28 0 0 0 chr9 4230765 4230793 -113631834 + AT_rich Low_complexity Low_complexity 1 28 0 1494 192 39 111 chr9 4231045 4231144 -113631483 - MLT1C LTR MaLR 0 467 362 2050 110 10 36 chr9 4231144 4231452 -113631175 - AluSx SINE Alu -10 302 3 1494 192 39 111 chr9 4231452 4231846 -113630781 - MLT1C LTR MaLR -105 362 10 2168 89 26 13 chr9 4232046 4232350 -113630277 + AluY SINE Alu 1 308 -3 254 320 117 16 chr9 4232533 4232661 -113629966 - MIR3 SINE MIR -32 176 36 279 133 0 0 chr9 4232713 4232758 -113629869 + (CA)n Simple_repeat Simple_repeat 1 45 0 388 335 90 13 chr9 4232817 4232972 -113629655 - MIR3 SINE MIR -12 196 30 425 347 78 25 chr9 4233037 4233279 -113629348 + MIR SINE MIR 2 256 -6 2377 95 0 0 chr9 4234627 4234932 -113627695 + AluSq SINE Alu 1 305 -8 316 297 124 59 chr9 4235146 4235436 -113627191 - L2 LINE L2 -961 2353 2045 515 320 117 17 chr9 4235456 4235687 -113626940 + MIR SINE MIR 8 261 -1 250 316 175 18 chr9 4235972 4236143 -113626484 + MIR3 SINE MIR 4 201 -7 285 250 174 45 chr9 4236555 4236687 -113625940 - MIR3 SINE MIR -30 178 30 225 268 73 12 chr9 4236861 4236943 -113625684 - MIR SINE MIR -13 249 163 376 306 54 0 chr9 4236950 4237061 -113625566 + L2 LINE L2 3153 3269 -3 249 333 8 58 chr9 4237065 4237185 -113625442 - MIR SINE MIR -121 141 28 282 95 0 0 chr9 4237647 4237689 -113624938 + (CA)n Simple_repeat Simple_repeat 2 43 0 273 309 0 24 chr9 4238879 4238963 -113623664 + MIR SINE MIR 17 98 -110 1527 187 50 39 chr9 4238982 4239341 -113623286 + L1MC4 LINE L1 7680 8042 0 218 136 45 0 chr9 4242065 4242109 -113620518 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 515 300 17 11 chr9 4242365 4242545 -113620082 - Charlie8 DNA MER1_type -2215 202 22 369 0 0 0 chr9 4243030 4243071 -113619556 + (CA)n Simple_repeat Simple_repeat 2 42 0 891 174 34 0 chr9 4243079 4243228 -113619399 - AluJb SINE Alu -21 291 138 267 103 0 0 chr9 4243382 4243421 -113619206 + (CA)n Simple_repeat Simple_repeat 2 40 0 497 303 85 0 chr9 4245260 4245425 -113617202 - MIR SINE MIR -37 225 47 378 268 72 14 chr9 4245687 4245825 -113616802 - L1ME4a LINE L1 -12 6109 5964 269 303 0 91 chr9 4245974 4246085 -113616542 - L1ME4a LINE L1 -344 5777 5686 2147 137 0 0 chr9 4246085 4246392 -113616235 - AluSq SINE Alu -6 307 1 269 303 0 91 chr9 4246392 4246455 -113616172 - L1ME4a LINE L1 -435 5686 5619 396 0 0 0 chr9 4246599 4246643 -113615984 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 190 293 207 0 chr9 4246812 4246870 -113615757 + MIR SINE MIR 37 106 -102 30 0 0 0 chr9 4248338 4248368 -113614259 + AT_rich Low_complexity Low_complexity 1 30 0 326 220 230 0 chr9 4248891 4248991 -113613636 - MER94 DNA DNA -3 131 9 2318 95 0 0 chr9 4249096 4249391 -113613236 + AluSx SINE Alu 1 295 -17 268 251 137 69 chr9 4249842 4250017 -113612610 + MIR SINE MIR 65 251 -11 245 219 114 49 chr9 4250960 4251083 -113611544 + LTR67 LTR ERVL 2 132 -425 * 404 259 126 74 chr9 4251076 4251489 -113611138 + MLT1H LTR MaLR 52 547 -2 274 170 0 21 chr9 4251741 4251788 -113610839 + Charlie8 DNA MER1_type 231 276 -2141 229 158 0 26 chr9 4252179 4252217 -113610410 - MLT1F LTR MaLR -504 38 2 228 279 14 40 chr9 4252350 4252438 -113610189 - MIR SINE MIR -55 153 68 245 333 130 25 chr9 4252553 4252715 -113609912 + L3 LINE CR1 1204 1382 -195 389 288 68 8 chr9 4253003 4253135 -113609492 + MIR3 SINE MIR 49 188 -20 1886 226 51 31 chr9 4254430 4254930 -113607697 - L1ME1 LINE L1 -5 6161 5651 342 256 0 43 chr9 4255023 4255140 -113607487 - LTR33 LTR ERVL 0 521 410 547 333 0 6 chr9 4255224 4255404 -113607223 - LTR33 LTR ERVL -307 214 36 27380 32 3 1 chr9 4255473 4259367 -113603260 - L1PA3 LINE L1 -3 6152 2247 11270 48 1 1 chr9 4259368 4260752 -113601875 + L1PA3 LINE L1 854 2237 -3909 388 157 43 0 chr9 4260754 4260824 -113601803 + HsTC2 DNA Tc2 1823 1895 -3 31 0 0 0 chr9 4261336 4261367 -113601260 + AT_rich Low_complexity Low_complexity 1 31 0 207 114 0 0 chr9 4262088 4262123 -113600504 + (CATG)n Simple_repeat Simple_repeat 1 35 0 186 250 0 0 chr9 4262277 4262333 -113600294 + A-rich Low_complexity Low_complexity 1 56 0 423 346 118 36 chr9 4262340 4262622 -113600005 - L2 LINE L2 -340 2974 2717 1460 192 96 16 chr9 4262622 4262934 -113599693 + MER58B DNA MER1_type 5 341 0 423 346 118 36 chr9 4262934 4263208 -113599419 - L2 LINE L2 -597 2717 2372 511 309 22 45 chr9 4263289 4263512 -113599115 + Tigger8 DNA MER2_type 46 263 -403 207 0 0 0 chr9 4263513 4263536 -113599091 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2124 95 3 11 chr9 4263544 4263828 -113598799 - AluSx SINE Alu -30 282 1 21 0 0 0 chr9 4263916 4263937 -113598690 + AT_rich Low_complexity Low_complexity 1 21 0 3925 156 2 2 chr9 4263986 4264596 -113598031 + L1PA16 LINE L1 25 634 -6215 6745 155 101 87 chr9 4264596 4266267 -113596360 + pTR5 LTR ERV1 745 2438 0 13646 188 12 47 chr9 4266269 4271322 -113591305 + L1PA16 LINE L1 628 5857 -1012 1827 140 4 11 chr9 4271322 4271600 -113591027 + AluSx SINE Alu 1 276 -36 2078 88 0 28 chr9 4271600 4271883 -113590744 - AluY SINE Alu 0 311 37 13646 188 12 47 chr9 4271883 4271895 -113590732 + L1PA16 LINE L1 5856 5867 -1002 295 40 20 20 chr9 4271895 4271945 -113590682 + (TAAAA)n Simple_repeat Simple_repeat 2 51 0 13646 188 12 47 chr9 4271945 4272911 -113589716 + L1PA16 LINE L1 5867 6310 -559 406 129 14 0 chr9 4272911 4272979 -113589648 + L1PA10 LINE L1 6094 6164 -4 3131 129 33 25 chr9 4273020 4273572 -113589055 + L1PA16 LINE L1 6305 6860 -9 297 322 70 39 chr9 4273599 4273857 -113588770 + Tigger8 DNA MER2_type 398 663 -3 1975 117 21 3 chr9 4274104 4274394 -113588233 + AluSq SINE Alu 1 295 -18 1829 115 15 8 chr9 4274402 4274662 -113587965 + AluSx SINE Alu 39 300 -12 584 236 98 94 chr9 4274723 4275224 -113587403 + MLT1K LTR MaLR 38 540 -48 183 80 0 0 chr9 4275437 4275462 -113587165 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 446 322 17 51 chr9 4277034 4277270 -113585357 - MIR SINE MIR -26 236 9 249 275 55 55 chr9 4278617 4278708 -113583919 - MIR3 SINE MIR -36 172 82 368 266 65 30 chr9 4278750 4278919 -113583708 + MER20B DNA MER1_type 5 179 -604 964 173 99 15 chr9 4279152 4279354 -113583273 - MER20 DNA MER1_type 0 219 1 359 200 35 35 chr9 4279500 4279585 -113583042 + L2 LINE L2 3227 3311 -2 2779 196 47 7 chr9 4281027 4281640 -113580987 + L1MB8 LINE L1 5526 6163 -15 727 288 86 70 chr9 4281835 4282498 -113580129 - L2 LINE L2 0 3272 2596 280 271 106 40 chr9 4282636 4282787 -113579840 + L2 LINE L2 2927 3087 -185 1019 174 68 0 chr9 4282910 4283100 -113579527 + MER3 DNA MER1_type 6 208 -1 324 322 51 8 chr9 4283100 4283218 -113579409 + L2 LINE L2 3191 3313 0 392 340 106 7 chr9 4283258 4283399 -113579228 - L2 LINE L2 0 3313 3159 315 71 0 0 chr9 4284783 4284825 -113577802 + (TG)n Simple_repeat Simple_repeat 2 43 0 2362 88 0 25 chr9 4285659 4285976 -113576651 + AluY SINE Alu 1 309 -2 25 0 0 0 chr9 4286790 4286815 -113575812 + AT_rich Low_complexity Low_complexity 1 25 0 505 288 118 9 chr9 4287512 4287741 -113574886 + L2 LINE L2 2339 2592 -722 2428 56 17 0 chr9 4287758 4288046 -113574581 - AluY SINE Alu -18 293 1 879 160 32 21 chr9 4288048 4288236 -113574391 + MER3 DNA MER1_type 16 205 -4 378 301 156 6 chr9 4288353 4288526 -113574101 + L2 LINE L2 3111 3309 -4 2702 190 134 40 chr9 4289298 4290081 -113572546 + L1MC4 LINE L1 6701 7573 -469 530 197 30 53 chr9 4290081 4290213 -113572414 + FLAM_A SINE Alu 2 130 -3 2702 190 134 40 chr9 4290213 4290286 -113572341 + L1MC4 LINE L1 7573 7638 -404 1002 164 0 0 chr9 4290301 4290453 -113572174 + AluJb SINE Alu 131 282 -30 180 0 0 0 chr9 4290453 4290473 -113572154 + (TTAA)n Simple_repeat Simple_repeat 4 23 0 800 167 0 147 chr9 4290547 4290825 -113571802 + L1MC4 LINE L1 7819 7995 0 180 329 0 57 chr9 4292589 4292659 -113569968 - MIR3 SINE MIR -42 166 101 225 201 91 0 chr9 4292718 4292783 -113569844 + MIR SINE MIR 36 111 -97 314 353 10 0 chr9 4293644 4293746 -113568881 + MIR3 SINE MIR 85 187 -21 22 56 0 0 chr9 4294427 4294463 -113568164 + AT_rich Low_complexity Low_complexity 1 36 0 439 261 6 72 chr9 4294485 4294655 -113567972 - MIR SINE MIR -49 213 56 216 333 128 8 chr9 4295758 4295875 -113566752 + L2 LINE L2 3141 3271 -1 484 285 40 47 chr9 4296107 4296343 -113566284 + MIR SINE MIR 20 257 -5 192 77 0 0 chr9 4297667 4297693 -113564934 + (A)n Simple_repeat Simple_repeat 1 26 0 377 269 0 0 chr9 4298476 4298584 -113564043 + L1MC4a LINE L1 5809 5916 -1892 24 32 0 0 chr9 4299634 4299665 -113562962 + AT_rich Low_complexity Low_complexity 1 31 0 376 269 75 78 chr9 4300353 4300394 -113562233 + L1MDa LINE L1 1157 1197 -5343 905 207 12 0 chr9 4300394 4300558 -113562069 + FRAM SINE Alu 1 166 0 376 269 75 78 chr9 4300558 4300784 -113561843 + L1MDa LINE L1 1197 1423 -5117 230 259 147 42 chr9 4300854 4300997 -113561630 + L1MDa LINE L1 1490 1647 -4883 250 266 72 0 chr9 4301120 4301259 -113561368 + HAL1b LINE L1 437 1669 -785 1917 164 0 16 chr9 4301564 4301881 -113560746 + AluJo SINE Alu 1 312 0 243 297 72 9 chr9 4301949 4302060 -113560567 + MIR SINE MIR 65 182 -80 8877 124 21 9 chr9 4302810 4304244 -113558383 - Tigger1 DNA MER2_type -967 1451 1 220 231 0 0 chr9 4304266 4304305 -113558322 - MIR SINE MIR -146 116 78 2183 97 0 10 chr9 4304485 4304785 -113557842 + AluSc SINE Alu 1 297 -12 348 127 0 0 chr9 4305653 4305708 -113556919 + (A)n Simple_repeat Simple_repeat 1 55 0 274 190 69 0 chr9 4306146 4306204 -113556423 - L2 LINE L2 -2 3311 3250 480 270 103 88 chr9 4306490 4306946 -113555681 + L1ME4a LINE L1 5517 5979 -142 1806 23 0 0 chr9 4308410 4308627 -113554000 - L1PA4 LINE L1 -255 5900 5684 1430 6 12 6 chr9 4308629 4308798 -113553829 + L1PA4 LINE L1 5986 6155 0 2216 129 3 40 chr9 4309590 4309940 -113552687 - MER1B DNA MER1_type 0 337 1 952 57 0 0 chr9 4310215 4310337 -113552290 + L1PA13 LINE L1 6036 6157 -6 201 121 0 0 chr9 4310416 4310449 -113552178 + (TG)n Simple_repeat Simple_repeat 2 34 0 1021 160 41 78 chr9 4310797 4311090 -113551537 + L1MA4 LINE L1 6016 6297 -3 1901 161 0 22 chr9 4311135 4311452 -113551175 - AluSx SINE Alu -2 310 1 1028 162 80 51 chr9 4312113 4312427 -113550200 + MER33 DNA MER1_type 1 323 -1 243 146 0 0 chr9 4312848 4312889 -113549738 + (CA)n Simple_repeat Simple_repeat 2 42 0 245 243 122 27 chr9 4313054 4313128 -113549499 + L3b LINE CR1 1198 1278 -305 233 402 37 0 chr9 4313144 4313251 -113549376 + L3b LINE CR1 1412 1522 -61 2286 120 0 3 chr9 4314043 4314344 -113548283 - AluSq SINE Alu -13 300 1 730 101 34 0 chr9 4315143 4315262 -113547365 + L1MA5 LINE L1 6176 6298 -2 747 130 130 0 chr9 4315563 4315686 -113546941 + AluSg SINE Alu 1 139 -171 3649 170 89 60 chr9 4366677 4367656 -113494971 + MER51B-int LTR ERV1 6809 7815 -1 2079 109 112 3 chr9 4367658 4367998 -113494629 + MER51B LTR ERV1 1 377 0 592 133 0 0 chr9 4367998 4368081 -113494546 + U6 snRNA snRNA 19 101 -6 182 37 37 0 chr9 4368130 4368157 -113494470 + (TAAAAA)n Simple_repeat Simple_repeat 5 32 0 1027 38 25 19 chr9 4368657 4368815 -113493812 + (TTTC)n Simple_repeat Simple_repeat 2 160 0 983 130 0 7 chr9 4368916 4369062 -113493565 - AluSq/x SINE Alu -168 145 1 25 31 0 0 chr9 4369842 4369874 -113492753 + AT_rich Low_complexity Low_complexity 1 32 0 249 254 0 0 chr9 4369900 4369971 -113492656 + GA-rich Low_complexity Low_complexity 2 72 0 3467 142 22 5 chr9 4371288 4371921 -113490706 - L1 LINE L1 -1286 6279 5636 1371 117 5 33 chr9 4371921 4372134 -113490493 + AluSp SINE Alu 90 296 -17 6566 201 15 38 chr9 4372149 4373068 -113489559 - L1 LINE L1 -1929 5636 4697 2379 103 3 0 chr9 4373068 4373378 -113489249 - AluSp SINE Alu -1 312 2 6566 201 15 38 chr9 4373378 4374759 -113487868 - L1 LINE L1 -2868 4697 3369 332 305 80 40 chr9 4374882 4375082 -113487545 + L2 LINE L2 2609 2816 -498 578 176 61 53 chr9 4375439 4375570 -113487057 + MER45 DNA AcHobo 2 133 -1448 * 956 183 27 40 chr9 4375563 4375787 -113486840 + MER74B LTR ERVL 55 275 -347 23 0 0 0 chr9 4375803 4375826 -113486801 + AT_rich Low_complexity Low_complexity 1 23 0 199 380 62 0 chr9 4376146 4376259 -113486368 + L2 LINE L2 3144 3263 -9 299 313 91 0 chr9 4376547 4376646 -113485981 + MER5B DNA MER1_type 1 108 -70 2010 88 4 0 chr9 4376994 4377244 -113485383 - AluSg SINE Alu -59 251 1 352 264 86 46 chr9 4378139 4378336 -113484291 - L1ME4a LINE L1 -211 5910 5706 2191 100 20 13 chr9 4380111 4380239 -113482388 + AluSc SINE Alu 1 127 -182 2301 106 0 6 chr9 4380239 4380551 -113482076 + AluSg SINE Alu 1 310 0 2191 100 20 13 chr9 4380551 4380723 -113481904 + AluSc SINE Alu 127 303 -6 512 152 13 0 chr9 4380827 4380906 -113481721 + MER33 DNA MER1_type 1 80 -244 216 309 30 19 chr9 4381286 4381435 -113481192 + GA-rich Low_complexity Low_complexity 3 243 0 324 0 0 0 chr9 4383441 4383477 -113479150 + (TG)n Simple_repeat Simple_repeat 2 37 0 2432 65 0 7 chr9 4383855 4384175 -113478452 + AluY SINE Alu 1 311 0 433 267 103 10 chr9 4385094 4385282 -113477345 - MIR SINE MIR -39 223 23 248 310 110 3 chr9 4385342 4385459 -113477168 + MIR SINE MIR 3 128 -80 240 286 114 19 chr9 4385548 4385653 -113476974 + MLT1K LTR MaLR 97 211 -377 387 236 21 64 chr9 4385661 4385801 -113476826 + MLT1L LTR MaLR 147 280 -335 1243 146 41 18 chr9 4386159 4386378 -113476249 - AluJo SINE Alu -3 309 86 14972 89 13 1 chr9 4387211 4389263 -113473364 - L1P LINE L1 -1423 4723 2646 3698 162 25 7 chr9 4389881 4390475 -113472152 + MER6A DNA MER2_type 1 605 0 378 298 149 0 chr9 4390752 4390893 -113471734 - MER5B DNA MER1_type -16 162 1 256 255 7 92 chr9 4391575 4391716 -113470911 + L1MC4 LINE L1 6476 6604 -1438 4165 222 139 10 chr9 4391732 4392935 -113469692 + L1MC3 LINE L1 6699 8014 -2 1517 157 16 12 chr9 4392987 4393242 -113469385 - AluJo SINE Alu -17 295 40 378 0 0 0 chr9 4393436 4393478 -113469149 + (TG)n Simple_repeat Simple_repeat 1 42 0 474 194 134 130 chr9 4393495 4393742 -113468885 + MER102a DNA MER1_type 77 324 -6 183 277 62 0 chr9 4393822 4393887 -113468740 + L2 LINE L2 2322 2390 -924 246 235 0 0 chr9 4394878 4394929 -113467698 + CT-rich Low_complexity Low_complexity 2 52 0 241 330 28 0 chr9 4395549 4395658 -113466969 + GA-rich Low_complexity Low_complexity 3 114 0 1908 125 15 0 chr9 4395782 4396046 -113466581 + AluSx SINE Alu 1 268 -44 218 342 94 8 chr9 4396191 4396308 -113466319 + MIR3 SINE MIR 31 157 -51 375 318 117 31 chr9 4396542 4396765 -113465862 - MIR SINE MIR -14 248 7 2287 83 0 49 chr9 4396789 4397116 -113465511 - AluY SINE Alu 0 311 1 2012 73 0 33 chr9 4397815 4398090 -113464537 + AluY SINE Alu 1 266 -45 31 0 0 0 chr9 4400749 4400780 -113461847 + AT_rich Low_complexity Low_complexity 1 31 0 190 310 40 60 chr9 4401224 4401324 -113461303 + MIR3 SINE MIR 89 186 -22 509 93 58 0 chr9 4402374 4402460 -113460167 - MSTB1 LTR MaLR -341 91 1 487 261 30 37 chr9 4402511 4402645 -113459982 + MER5A DNA MER1_type 57 189 0 332 267 64 41 chr9 4403024 4403196 -113459431 + L1ME4a LINE L1 5574 5749 -372 1167 253 67 75 chr9 4403199 4403705 -113458922 - MLT1J LTR MaLR -7 504 3 331 226 209 43 chr9 4403744 4403978 -113458649 + L1ME4a LINE L1 5803 6075 -46 219 186 0 0 chr9 4405120 4405163 -113457464 + GA-rich Low_complexity Low_complexity 1 43 0 1710 122 61 34 chr9 4405936 4406231 -113456396 - AluSg SINE Alu -7 303 1 1082 266 135 37 chr9 4406589 4407107 -113455520 + L2 LINE L2 1094 1662 -1652 5310 172 23 14 chr9 4407111 4408249 -113454378 - L1P LINE L1 -765 5381 4252 3686 98 7 19 chr9 4408247 4408312 -113454315 + L1PA15 LINE L1 5379 5443 -722 * 1827 148 3 14 chr9 4408312 4408615 -113454012 + AluJo SINE Alu 3 302 0 3686 98 7 19 chr9 4408615 4409086 -113453541 + L1PA15 LINE L1 5443 5910 -255 213 256 61 24 chr9 4409626 4409708 -113452919 - MER91C DNA MER1_type -23 117 33 2808 159 39 4 chr9 4410653 4411144 -113451483 - L1MB3 LINE L1 -3 6180 5673 3167 88 16 7 chr9 4411151 4411574 -113451053 - L1PA11 LINE L1 -3 6171 5745 956 237 11 0 chr9 4411720 4411906 -113450721 - MER5A DNA MER1_type -1 188 1 444 172 0 94 chr9 4411992 4412184 -113450443 + (AGGTG)n Simple_repeat Simple_repeat 2 175 0 1433 224 118 7 chr9 4412514 4412930 -113449697 - MLT1C LTR MaLR 0 467 6 352 338 8 72 chr9 4413161 4413424 -113449203 - L2 LINE L2 -191 3081 2836 477 356 18 18 chr9 4413446 4413671 -113448956 - L3 LINE CR1 -287 1290 1066 185 0 40 0 chr9 4414539 4414564 -113448063 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 451 193 83 121 chr9 4415184 4415449 -113447178 + MER112 DNA MER1_type 1 255 -1 213 220 40 0 chr9 4415977 4416027 -113446600 + CT-rich Low_complexity Low_complexity 3 54 0 225 371 86 9 chr9 4416912 4417028 -113445599 + L2 LINE L2 3187 3311 -2 196 336 8 50 chr9 4417427 4417546 -113445081 + MIR SINE MIR 32 145 -63 2138 122 0 0 chr9 4419251 4419539 -113443088 + AluSx SINE Alu 1 288 -24 448 204 106 18 chr9 4419554 4419667 -113442960 + Charlie4 DNA MER1_type 1839 1961 0 1385 170 15 26 chr9 4420003 4420268 -113442359 + L1PA13 LINE L1 5891 6152 -11 189 0 0 0 chr9 4420268 4420289 -113442338 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 2121 129 0 0 chr9 4420310 4420605 -113442022 + AluSx SINE Alu 1 295 -17 194 269 108 9 chr9 4420843 4420959 -113441668 + MIR SINE MIR 9 138 -70 618 247 159 18 chr9 4420961 4421188 -113441439 - MIR SINE MIR -3 259 1 180 0 0 0 chr9 4421836 4421856 -113440771 + (TAA)n Simple_repeat Simple_repeat 2 21 0 2166 132 0 16 chr9 4421856 4422167 -113440460 + AluSx SINE Alu 1 306 -6 445 260 253 4 chr9 4422432 4422713 -113439914 + L2 LINE L2 2303 2653 -661 284 279 13 0 chr9 4422714 4422793 -113439834 - MER116 DNA Mariner 0 80 1 628 310 48 85 chr9 4422798 4423411 -113439216 + L2 LINE L2 2660 3251 -21 338 304 152 23 chr9 4423511 4423682 -113438945 - MIR SINE MIR -50 212 20 243 0 0 0 chr9 4423688 4423715 -113438912 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 422 268 72 102 chr9 4423767 4424002 -113438625 - MER102b DNA MER1_type -11 330 103 763 276 30 42 chr9 4424985 4425184 -113437443 - MLT1J2 LTR MaLR 0 450 253 1383 175 0 43 chr9 4425184 4425222 -113437405 - MER58A DNA MER1_type -2196 224 186 2211 120 3 0 chr9 4425222 4425523 -113437104 + AluSq SINE Alu 1 302 -11 1383 175 0 43 chr9 4425523 4425718 -113436909 - MER58A DNA MER1_type -2234 186 1 763 276 30 42 chr9 4425718 4425783 -113436844 - MLT1J2 LTR MaLR -197 253 189 185 365 48 21 chr9 4426022 4426167 -113436460 - L2 LINE L2 -318 2954 2806 2073 132 0 22 chr9 4426288 4426606 -113436021 - AluSx SINE Alu 0 312 2 2077 157 0 0 chr9 4426809 4427121 -113435506 + AluSx SINE Alu 1 312 0 2234 103 0 3 chr9 4427474 4427775 -113434852 + AluSc SINE Alu 1 300 -9 322 295 156 64 chr9 4427896 4428191 -113434436 - L2 LINE L2 -17 3255 2934 189 171 0 0 chr9 4428242 4428277 -113434350 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 2379 70 0 3 chr9 4429329 4429654 -113432973 + AluY SINE Alu 1 311 0 313 228 272 13 chr9 4429814 4429972 -113432655 + L1ME4a LINE L1 5670 5868 -253 2208 96 13 26 chr9 4430185 4430498 -113432129 + AluSq SINE Alu 1 309 -4 429 279 14 21 chr9 4431040 4431066 -113431561 - MIR SINE MIR -46 216 191 483 69 0 0 chr9 4431066 4431138 -113431489 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 429 279 14 21 chr9 4431138 4431251 -113431376 - MIR SINE MIR -71 191 78 450 162 0 0 chr9 4431255 4431323 -113431304 + Tigger2 DNA MER2_type 2 69 -2649 * 2571 142 56 7 chr9 4431307 4431738 -113430889 + Tigger2 DNA MER2_type 2267 2718 0 196 271 0 0 chr9 4431758 4431806 -113430821 - MIR SINE MIR -208 54 7 2369 125 40 8 chr9 4432239 4432592 -113430035 + THE1B LTR MaLR 1 364 0 270 212 40 30 chr9 4432737 4432836 -113429791 - L1MEd LINE L1 -5029 1090 991 271 321 37 83 chr9 4433729 4433838 -113428789 + MIR SINE MIR 16 119 -89 2263 143 45 31 chr9 4434005 4434116 -113428511 - Tigger1 DNA MER2_type -1 2417 2309 1951 145 21 3 chr9 4434116 4434406 -113428221 + AluSx SINE Alu 1 295 -17 2263 143 45 31 chr9 4434406 4434713 -113427914 - Tigger1 DNA MER2_type -109 2309 1993 * 3164 285 65 0 chr9 4434707 4435353 -113427274 - Tigger1 DNA MER2_type -1687 731 44 1805 176 7 0 chr9 4435355 4435645 -113426982 + AluJo SINE Alu 3 294 -18 2324 100 0 13 chr9 4435838 4436138 -113426489 + AluSc SINE Alu 1 296 -13 1609 269 112 11 chr9 4436505 4436720 -113425907 - L2 LINE L2 0 3313 3121 183 80 0 0 chr9 4436720 4436745 -113425882 + (ATGGTG)n Simple_repeat Simple_repeat 3 27 0 1609 269 112 11 chr9 4436745 4436780 -113425847 - L2 LINE L2 -192 3121 3091 2021 106 0 35 chr9 4436780 4437063 -113425564 + AluSg SINE Alu 1 273 -37 1609 269 112 11 chr9 4437063 4437585 -113425042 - L2 LINE L2 -222 3091 2449 900 243 18 101 chr9 4437585 4437754 -113424873 - L2 LINE L2 -1148 2166 2037 1575 153 0 130 chr9 4437754 4438101 -113424526 + AluJb SINE Alu 1 302 -10 900 243 18 101 chr9 4438101 4438268 -113424359 - L2 LINE L2 -1277 2037 1858 19224 82 226 8 chr9 4439075 4442168 -113420459 + L1PA6 LINE L1 1635 5401 -745 3655 43 2 0 chr9 4442168 4442583 -113420044 + L1PA6 LINE L1 5730 6146 -8 750 162 58 104 chr9 4442766 4443025 -113419602 - L1MB8 LINE L1 -1 6177 5931 650 183 37 43 chr9 4443025 4443189 -113419438 - L1MA6 LINE L1 -232 6068 5906 1521 195 6 38 chr9 4443191 4443504 -113419123 - AluJb SINE Alu -9 303 1 10792 168 42 11 chr9 4443507 4445117 -113417510 - L1MA6 LINE L1 -783 5363 3670 1798 162 7 13 chr9 4445117 4445426 -113417201 - AluJb SINE Alu -5 307 1 10792 168 42 11 chr9 4445426 4445916 -113416711 - L1MA6 LINE L1 -2476 3670 3197 31 26 0 0 chr9 4446272 4446310 -113416317 + AT_rich Low_complexity Low_complexity 1 38 0 2210 125 0 6 chr9 4446310 4446621 -113416006 - AluSx SINE Alu -3 309 1 283 270 51 7 chr9 4446626 4446763 -113415864 - MER113 DNA MER1_type? -378 143 1 2051 141 0 3 chr9 4447192 4447505 -113415122 + AluSx SINE Alu 1 312 0 1188 86 0 7 chr9 4447515 4447667 -113414960 + L1MA1 LINE L1 6148 6298 -4 21 57 0 0 chr9 4447667 4447702 -113414925 + AT_rich Low_complexity Low_complexity 1 35 0 2438 235 37 7 chr9 4447902 4448574 -113414053 + L1M4 LINE L1 3161 3852 -2294 40447 74 9 2 chr9 4448585 4454693 -113407934 + L1PA6 LINE L1 1 6152 -2 347 257 77 11 chr9 4454672 4454855 -113407772 + L1M4 LINE L1 4166 4360 -1786 * 20138 39 10 2 chr9 4454956 4457676 -113404951 + L1P2 LINE L1 2915 5658 -497 247 258 16 0 chr9 4457975 4458037 -113404590 - MIR SINE MIR -123 139 77 224 298 162 10 chr9 4459404 4459602 -113403025 + L2 LINE L2 2094 2321 -993 997 280 22 19 chr9 4459682 4459950 -113402677 + MLT1H1 LTR MaLR 3 271 -284 214 29 57 0 chr9 4459995 4460030 -113402597 + (GA)n Simple_repeat Simple_repeat 1 37 0 216 67 0 0 chr9 4460114 4460144 -113402483 + (TAATG)n Simple_repeat Simple_repeat 3 32 0 350 384 21 11 chr9 4460156 4460346 -113402281 + L2 LINE L2 2566 2757 -557 180 111 0 0 chr9 4460376 4460403 -113402224 + (CCCCAA)n Simple_repeat Simple_repeat 6 32 0 1338 247 36 11 chr9 4460859 4461215 -113401412 - L1ME1 LINE L1 -24 6142 5778 2064 175 53 20 chr9 4461362 4462028 -113400599 - L1ME1 LINE L1 -744 5402 4849 906 198 0 18 chr9 4462032 4462199 -113400428 + FRAM SINE Alu 1 164 -12 2756 208 52 67 chr9 4462210 4462261 -113400366 - L1ME1 LINE L1 -1300 4846 4796 310 28 0 0 chr9 4462261 4462297 -113400330 - MADE1 DNA Mariner 0 80 45 2756 208 52 67 chr9 4462297 4462428 -113400199 - L1ME1 LINE L1 -1350 4796 4665 1946 146 20 3 chr9 4462428 4462730 -113399897 - AluJb SINE Alu -5 307 1 2756 208 52 67 chr9 4462730 4463351 -113399276 - L1ME1 LINE L1 -1481 4665 4019 306 0 0 0 chr9 4463360 4463394 -113399233 + (TG)n Simple_repeat Simple_repeat 2 35 0 2375 159 3 3 chr9 4463443 4463808 -113398819 + MLT1A1 LTR MaLR 1 365 0 638 269 60 96 chr9 4464122 4464569 -113398058 + MLT1K LTR MaLR 156 586 -2 1580 130 0 0 chr9 4464675 4464891 -113397736 - AluSx SINE Alu -96 216 1 264 257 14 14 chr9 4465072 4465146 -113397481 + L2 LINE L2 3195 3268 -4 224 282 15 84 chr9 4465382 4465513 -113397114 - L2 LINE L2 0 3272 3151 933 288 16 0 chr9 4465569 4465812 -113396815 - MIR SINE MIR -15 247 1 230 335 57 67 chr9 4465883 4466092 -113396535 - L2 LINE L2 -214 3058 2852 1230 239 38 35 chr9 4467180 4467548 -113395079 - MLT1J LTR MaLR 0 511 143 1581 164 36 22 chr9 4467607 4467882 -113394745 + AluJb SINE Alu 1 279 -33 260 290 220 5 chr9 4469215 4469401 -113393226 + L2 LINE L2 2921 3146 -167 2118 218 55 0 chr9 4469759 4470228 -113392399 - Charlie4a DNA MER1_type 0 508 14 217 233 178 0 chr9 4470280 4470353 -113392274 + L2 LINE L2 3227 3312 -1 498 116 0 0 chr9 4471332 4471401 -113391226 + MSTA LTR MaLR 360 428 0 281 221 163 0 chr9 4471414 4471500 -113391127 + MER113 DNA MER1_type? 295 394 -127 230 271 0 94 chr9 4471911 4471996 -113390631 + MER5B DNA MER1_type 3 79 -99 373 167 15 0 chr9 4472119 4472185 -113390442 + MSTA LTR MaLR 362 428 0 281 221 163 0 chr9 4472198 4472284 -113390343 + MER113 DNA MER1_type? 295 394 -127 287 224 0 94 chr9 4472696 4472781 -113389846 + MER5B DNA MER1_type 3 79 -99 2293 129 122 38 chr9 4472900 4473063 -113389564 + MSTA LTR MaLR 1 149 -279 2055 106 39 0 chr9 4473063 4473368 -113389259 - AluSx SINE Alu 0 312 1 2293 129 122 38 chr9 4473368 4473599 -113389028 + MSTA LTR MaLR 149 428 0 386 165 142 63 chr9 4473611 4473738 -113388889 + MER113 DNA MER1_type? 295 431 -90 1616 101 5 0 chr9 4474157 4474376 -113388251 - AluSg/x SINE Alu -10 302 83 439 272 146 0 chr9 4474769 4474927 -113387700 + MER20B DNA MER1_type 1 181 -602 693 323 81 9 chr9 4475075 4475419 -113387208 + L1MC/D LINE L1 5454 5822 -1986 2536 179 79 20 chr9 4475697 4475762 -113386865 + Tigger6a DNA MER2_type 390 450 -1147 1769 127 33 23 chr9 4475762 4476062 -113386565 + AluSg SINE Alu 1 303 -7 2536 179 79 20 chr9 4476062 4476594 -113386033 + Tigger6a DNA MER2_type 450 1022 -61 961 211 0 0 chr9 4476595 4476775 -113385852 - AluJb SINE Alu -2 310 131 190 148 37 0 chr9 4476840 4476894 -113385733 + (TA)n Simple_repeat Simple_repeat 2 57 0 29 47 0 0 chr9 4477057 4477100 -113385527 + AT_rich Low_complexity Low_complexity 1 43 0 2099 190 72 11 chr9 4477791 4478248 -113384379 - MER31A LTR ERV1 0 485 1 436 267 50 62 chr9 4478330 4478491 -113384136 - MIR SINE MIR -51 211 53 227 215 15 31 chr9 4479574 4479639 -113382988 - MIR SINE MIR -31 231 168 287 228 0 0 chr9 4479793 4479850 -113382777 - MLT1J2 LTR MaLR 0 450 394 1829 159 0 20 chr9 4481401 4481696 -113380931 + AluSx SINE Alu 1 289 -23 1492 133 27 5 chr9 4482379 4482647 -113379980 - LTR24C LTR ERV1 0 635 316 22 35 0 0 chr9 4482655 4482684 -113379943 + AT_rich Low_complexity Low_complexity 1 29 0 1731 110 16 0 chr9 4482684 4482929 -113379698 - L1MA2 LINE L1 0 6304 6056 2508 56 0 0 chr9 4482929 4483231 -113379396 - AluYa5 SINE Alu -9 302 1 710 181 95 0 chr9 4483902 4484018 -113378609 + FLAM_C SINE Alu 3 129 -14 241 261 15 0 chr9 4484071 4484136 -113378491 + (TTCA)n Simple_repeat Simple_repeat 4 69 0 183 292 0 97 chr9 4484330 4484402 -113378225 - L2 LINE L2 -332 2940 2876 205 348 22 0 chr9 4484432 4484524 -113378103 - L2 LINE L2 -484 2830 2737 2354 76 0 13 chr9 4485121 4485424 -113377203 - AluY SINE Alu -8 303 5 2756 186 117 41 chr9 4486310 4486918 -113375709 - MLT1E1 LTR MaLR 0 654 1 764 138 9 0 chr9 4487585 4487694 -113374933 - FLAM_C SINE Alu -11 132 23 262 290 54 21 chr9 4487699 4487885 -113374742 - L1MEd LINE L1 -3107 3022 2831 338 288 72 16 chr9 4487898 4488148 -113374479 - L1MEd LINE L1 -5043 1076 813 257 341 58 45 chr9 4488345 4488656 -113373971 - L1MEd LINE L1 -5555 564 250 1663 178 31 0 chr9 4488685 4488978 -113373649 + MSTB2 LTR MaLR 7 308 -149 30 27 0 0 chr9 4488983 4489020 -113373607 + AT_rich Low_complexity Low_complexity 1 37 0 1129 149 0 0 chr9 4489039 4489207 -113373420 + MSTB2 LTR MaLR 290 457 0 778 210 32 68 chr9 4489798 4490017 -113372610 + MIR SINE MIR 52 262 0 237 217 142 75 chr9 4490424 4490544 -113372083 - L2 LINE L2 -8 3305 3178 2349 131 16 31 chr9 4490795 4491176 -113371451 + THE1C LTR MaLR 1 375 0 247 241 17 0 chr9 4491308 4491366 -113371261 - MER5A DNA MER1_type -3 186 128 2520 78 0 0 chr9 4491368 4491676 -113370951 + AluY SINE Alu 1 308 -3 21 0 0 0 chr9 4492468 4492489 -113370138 + AT_rich Low_complexity Low_complexity 1 21 0 3755 170 20 27 chr9 4492504 4493271 -113369356 + L1MB7 LINE L1 5202 5969 -215 731 300 18 0 chr9 4493927 4494147 -113368480 + MIR SINE MIR 36 259 -3 1029 193 0 0 chr9 4495188 4495354 -113367273 + FRAM SINE Alu 1 166 0 2244 104 3 25 chr9 4495456 4495773 -113366854 - AluSx SINE Alu -2 310 1 515 179 36 0 chr9 4496264 4496376 -113366251 - L1 LINE L1 -2824 3322 3207 29 47 0 0 chr9 4496664 4496707 -113365920 + AT_rich Low_complexity Low_complexity 1 43 0 207 179 0 0 chr9 4497383 4497422 -113365205 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 201 281 53 61 chr9 4499133 4499247 -113363380 + MIR SINE MIR 99 211 -51 305 326 28 14 chr9 4499276 4499329 -113363298 - MIR3 SINE MIR -5 203 152 1901 164 0 22 chr9 4499329 4499647 -113362980 + AluJo SINE Alu 1 311 -1 305 326 28 14 chr9 4499647 4499737 -113362890 - MIR3 SINE MIR -56 152 58 699 295 52 33 chr9 4499837 4500108 -113362519 - Charlie8 DNA MER1_type -2141 276 1 1730 220 37 8 chr9 4500117 4500472 -113362155 + MLT1A1 LTR MaLR 1 365 0 2115 121 13 16 chr9 4500489 4500795 -113361832 - AluSx SINE Alu -7 305 1 190 379 38 15 chr9 4500795 4500927 -113361700 + L2 LINE L2 2776 2910 -404 1785 166 3 24 chr9 4501035 4501331 -113361296 - AluJo SINE Alu -19 293 4 726 243 0 0 chr9 4502017 4502153 -113360474 - FLAM_C SINE Alu -6 137 2 570 309 40 15 chr9 4502638 4502839 -113359788 + MLT1I LTR MaLR 1 206 -203 7826 169 13 26 chr9 4502955 4504377 -113358250 + L1P LINE L1 11 1414 -4732 288 211 14 0 chr9 4504481 4504552 -113358075 + L1MB3 LINE L1 4744 4815 -1331 565 185 0 11 chr9 4504552 4504644 -113357983 + AluJb SINE Alu 41 131 -181 709 250 92 8 chr9 4504680 4504940 -113357687 + L1MB3 LINE L1 4812 5093 -1053 1182 179 0 23 chr9 4504986 4505204 -113357423 - AluJb SINE Alu -13 299 87 976 177 0 11 chr9 4505275 4505456 -113357171 - AluSg/x SINE Alu -5 307 129 292 261 46 50 chr9 4505513 4505666 -113356961 + L1MB3 LINE L1 5257 5412 -753 708 212 54 163 chr9 4505731 4506203 -113356424 + L1MC4a LINE L1 5692 6101 -1707 848 157 0 30 chr9 4506203 4506337 -113356290 - FLAM_C SINE Alu -3 130 1 708 212 54 163 chr9 4506337 4506397 -113356230 + L1MC4a LINE L1 6101 6166 -1642 2318 108 0 0 chr9 4506643 4506950 -113355677 - AluSq SINE Alu -6 307 1 3455 128 67 92 chr9 4507143 4507711 -113354916 + L1MB3 LINE L1 5450 5996 -187 1943 148 3 3 chr9 4507711 4508002 -113354625 - AluJb SINE Alu -21 291 1 3455 128 67 92 chr9 4508002 4508184 -113354443 + L1MB3 LINE L1 5996 6181 -2 1572 227 108 83 chr9 4508184 4508620 -113354007 + L1MC5 LINE L1 6560 6984 -977 1936 112 21 17 chr9 4508620 4508907 -113353720 + AluSx SINE Alu 7 294 -18 1572 227 108 83 chr9 4508907 4509324 -113353303 + L1MC5 LINE L1 6984 7443 -518 27 0 0 0 chr9 4509336 4509363 -113353264 + AT_rich Low_complexity Low_complexity 1 27 0 383 147 0 29 chr9 4509377 4509445 -113353182 - AluJb SINE Alu -167 135 70 750 120 0 0 chr9 4509546 4509646 -113352981 + AluSg/x SINE Alu 187 286 -26 222 361 0 0 chr9 4510127 4510199 -113352428 + L2 LINE L2 2798 2869 -445 1217 124 36 26 chr9 4510499 4510692 -113351935 - AluJo SINE Alu -117 195 1 224 179 30 60 chr9 4510692 4510759 -113351868 + MIR SINE MIR 104 168 -94 180 255 21 0 chr9 4511141 4511188 -113351439 - L2 LINE L2 0 3272 3225 22 0 0 0 chr9 4511402 4511424 -113351203 + AT_rich Low_complexity Low_complexity 1 22 0 482 237 21 0 chr9 4511957 4512054 -113350573 - MER81 DNA DNA -14 100 2 1937 147 3 0 chr9 4512806 4513098 -113349529 + AluSx SINE Alu 1 293 -19 1969 152 7 7 chr9 4513433 4513743 -113348884 - AluSx SINE Alu -2 310 1 306 106 0 0 chr9 4513877 4513924 -113348703 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 276 320 50 50 chr9 4514126 4514326 -113348301 - L2 LINE L2 -188 3084 2885 1287 192 5 0 chr9 4514419 4514638 -113347989 + AluJo SINE Alu 1 220 -92 738 263 40 11 chr9 4514638 4514813 -113347814 + AluJo SINE Alu 86 265 -47 25 0 0 0 chr9 4514841 4514866 -113347761 + AT_rich Low_complexity Low_complexity 1 25 0 44768 41 0 1 chr9 4514880 4521040 -113341587 - L1PA3 LINE L1 0 6155 2 246 205 0 0 chr9 4521857 4521896 -113340731 - AluJ/monomer SINE Alu -263 39 1 2439 82 3 0 chr9 4521918 4522223 -113340404 - AluSc SINE Alu -3 306 1 2347 91 0 3 chr9 4522249 4522547 -113340080 - AluSx SINE Alu -15 297 1 1180 183 76 55 chr9 4522550 4522840 -113339787 + L1MC4 LINE L1 6777 7072 -970 2224 237 94 5 chr9 4522854 4523462 -113339165 + L1MC4 LINE L1 7241 7902 -140 392 208 0 0 chr9 4523742 4523814 -113338813 + MER94 DNA DNA 2 73 -61 207 0 0 0 chr9 4524068 4524091 -113338536 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 266 335 73 35 chr9 4524094 4524354 -113338273 + L2 LINE L2 1914 2183 -1131 28 0 0 0 chr9 4524354 4524382 -113338245 + AT_rich Low_complexity Low_complexity 1 28 0 759 192 8 0 chr9 4524453 4524573 -113338054 - AluJb SINE Alu -190 122 2 429 278 23 8 chr9 4524600 4524733 -113337894 + L2 LINE L2 2225 2359 -955 1647 228 24 73 chr9 4524894 4525398 -113337229 + MLT2B1 LTR ERVL 1 479 -41 240 111 0 0 chr9 4525385 4525421 -113337206 + (CATATA)n Simple_repeat Simple_repeat 2 37 0 * 242 213 40 13 chr9 4525398 4525480 -113337147 + (CATA)n Simple_repeat Simple_repeat 1 84 0 312 89 54 54 chr9 4525438 4525519 -113337108 + MLT2D LTR ERVL 367 414 0 680 112 0 0 chr9 4526989 4527087 -113335540 - AluSx SINE Alu -6 306 209 1675 98 0 0 chr9 4527126 4527331 -113335296 - AluSx SINE Alu -103 209 5 622 344 6 34 chr9 4527356 4527682 -113334945 + L2 LINE L2 2376 2692 -622 491 221 30 70 chr9 4527727 4527926 -113334701 + L2 LINE L2 3120 3310 -3 2224 75 0 52 chr9 4528185 4528491 -113334136 + AluY SINE Alu 1 290 -21 959 146 0 38 chr9 4528494 4528652 -113333975 + AluSg/x SINE Alu 139 290 -20 1782 172 10 10 chr9 4528677 4528979 -113333648 - AluJo SINE Alu -10 302 1 208 200 67 53 chr9 4529079 4529154 -113333473 - L2 LINE L2 -923 2391 2316 909 225 0 0 chr9 4529387 4529556 -113333071 - FAM SINE Alu -6 169 1 239 173 49 25 chr9 4529657 4529738 -113332889 + L1ME4a LINE L1 6038 6120 -1 2338 80 3 7 chr9 4530258 4530557 -113332070 - AluY SINE Alu -13 298 1 349 351 35 18 chr9 4530767 4530995 -113331632 + L3 LINE CR1 1345 1576 -1 1255 208 112 16 chr9 4531185 4531485 -113331142 - MLT1I LTR MaLR -2 407 92 41 36 0 0 chr9 4531509 4531564 -113331063 + AT_rich Low_complexity Low_complexity 1 55 0 2260 105 6 6 chr9 4531570 4531883 -113330744 + AluSq SINE Alu 1 313 0 1263 28 0 0 chr9 4531930 4532075 -113330552 - L1PA4 LINE L1 -8 6147 6003 1951 23 0 0 chr9 4532075 4532294 -113330333 + L1PA4 LINE L1 5777 5995 -160 519 296 0 0 chr9 4532870 4533005 -113329622 + L1MC/D LINE L1 5421 5555 -2253 1756 201 9 25 chr9 4533016 4533077 -113329550 + MLT2B1 LTR ERVL 1 61 -459 1804 158 0 27 chr9 4533077 4533369 -113329258 + AluJb SINE Alu 1 284 -28 1756 201 9 25 chr9 4533369 4533671 -113328956 + MLT2B1 LTR ERVL 61 409 -111 1468 169 72 14 chr9 4533847 4534125 -113328502 + AluJo SINE Alu 5 298 -4 262 185 0 37 chr9 4534353 4534461 -113328166 + CT-rich Low_complexity Low_complexity 2 105 0 1256 124 27 5 chr9 4534464 4534649 -113327978 - AluSq SINE Alu -124 189 1 2129 131 0 13 chr9 4534744 4535057 -113327570 + AluSx SINE Alu 1 309 -3 318 347 0 0 chr9 4535163 4535261 -113327366 + L1MC/D LINE L1 5465 5562 -2246 321 146 0 0 chr9 4535265 4535320 -113327307 + MLT2B2 LTR ERVL 1 55 -460 1363 138 0 46 chr9 4535326 4535543 -113327084 + AluJb SINE Alu 1 207 -105 1913 162 0 20 chr9 4535897 4536200 -113326427 + AluSq SINE Alu 1 297 -16 2520 184 89 7 chr9 4536312 4536887 -113325740 - L1MB7 LINE L1 -76 6108 5487 1838 131 3 91 chr9 4536887 4537216 -113325411 - AluSx SINE Alu -12 300 1 5732 178 47 6 chr9 4537233 4538263 -113324364 + L1MA2 LINE L1 5 1076 -6489 282 179 0 0 chr9 4538279 4538335 -113324292 + CT-rich Low_complexity Low_complexity 2 57 0 5937 131 29 84 chr9 4539102 4539954 -113322673 + L1MA2 LINE L1 1081 1979 -5744 2305 105 14 0 chr9 4539954 4540249 -113322378 - AluSx SINE Alu -13 299 1 5937 131 29 84 chr9 4540249 4540627 -113322000 + L1MA2 LINE L1 1979 2376 -5347 2282 114 0 3 chr9 4540627 4540934 -113321693 - AluSx SINE Alu -6 306 1 5937 131 29 84 chr9 4540934 4542230 -113320397 + L1MA2 LINE L1 2376 3742 -3981 2811 73 0 5 chr9 4542230 4542598 -113320029 + L1PA8 LINE L1 5807 6172 0 5937 131 29 84 chr9 4542598 4542980 -113319647 + L1MA2 LINE L1 3742 4144 -3579 2627 90 0 37 chr9 4542980 4543285 -113319342 + THE1B LTR MaLR 1 291 -73 2235 119 0 0 chr9 4543285 4543588 -113319039 - AluSg SINE Alu -7 303 1 2627 90 0 37 chr9 4543588 4543660 -113318967 + THE1B LTR MaLR 291 364 0 5937 131 29 84 chr9 4543660 4545262 -113317365 + L1MA2 LINE L1 4144 5833 -1890 1712 158 92 0 chr9 4545262 4545534 -113317093 - AluSx SINE Alu -15 297 1 5937 131 29 84 chr9 4545534 4545690 -113316937 + L1MA2 LINE L1 5833 5996 -1727 1614 144 48 41 chr9 4545690 4545981 -113316646 + AluJb SINE Alu 11 303 -9 5937 131 29 84 chr9 4545981 4546589 -113316038 + L1MA2 LINE L1 5996 6636 -1087 1304 141 0 0 chr9 4546589 4546774 -113315853 + AluSg/x SINE Alu 125 309 -3 5937 131 29 84 chr9 4546774 4548137 -113314490 + L1MA2 LINE L1 6636 7723 0 2209 150 0 0 chr9 4548142 4548503 -113314124 + L1 LINE L1 4644 5004 -1142 1271 203 68 0 chr9 4548503 4548740 -113313887 + AluJb SINE Alu 1 253 -59 21 36 0 0 chr9 4550161 4550189 -113312438 + GC_rich Low_complexity Low_complexity 1 28 0 2136 102 3 20 chr9 4552000 4552304 -113310323 - AluSx SINE Alu -13 299 1 234 195 37 98 chr9 4552320 4552402 -113310225 + L1MC4 LINE L1 6627 6703 -1339 217 274 14 14 chr9 4552547 4552620 -113310007 - L3 LINE CR1 -10 1567 1495 180 305 67 9 chr9 4552703 4552808 -113309819 - L2 LINE L2 -3 3310 3200 3363 136 28 16 chr9 4553017 4553332 -113309295 - L1PB4 LINE L1 -3 6153 5826 1588 197 28 14 chr9 4553332 4553621 -113309006 - AluJo SINE Alu -19 293 1 3363 136 28 16 chr9 4553621 4553873 -113308754 - L1PB4 LINE L1 -330 5826 5579 745 206 63 71 chr9 4553960 4554213 -113308414 + MIR SINE MIR 12 262 0 309 283 83 17 chr9 4554214 4554334 -113308293 - L3 LINE CR1 -232 1345 1218 1209 174 38 5 chr9 4554375 4554587 -113308040 + MER20 DNA MER1_type 1 219 0 196 250 269 19 chr9 4555273 4555381 -113307246 + MIR3 SINE MIR 14 148 -60 183 80 0 0 chr9 4555794 4555819 -113306808 + (T)n Simple_repeat Simple_repeat 1 25 0 189 0 0 0 chr9 4555896 4555917 -113306710 + (TTTTC)n Simple_repeat Simple_repeat 1 21 0 484 179 14 28 chr9 4555917 4556062 -113306565 + CT-rich Low_complexity Low_complexity 3 145 0 665 233 0 0 chr9 4556062 4556195 -113306432 - FLAM_C SINE Alu 0 133 1 2116 141 11 22 chr9 4556230 4556599 -113306028 - L1MD1 LINE L1 0 6242 5878 38 0 0 0 chr9 4556606 4556644 -113305983 + AT_rich Low_complexity Low_complexity 1 38 0 2626 187 129 44 chr9 4556925 4557127 -113305500 - L1MD1 LINE L1 -350 5892 5709 2219 117 10 0 chr9 4557127 4557436 -113305191 - AluSx SINE Alu 0 312 1 2626 187 129 44 chr9 4557436 4557574 -113305053 - L1MD1 LINE L1 -533 5709 5584 2233 110 3 3 chr9 4557574 4557874 -113304753 - AluSx SINE Alu -12 300 1 2626 187 129 44 chr9 4557874 4558094 -113304533 - L1MD1 LINE L1 -658 5584 5384 1578 202 0 26 chr9 4558094 4558401 -113304226 - AluJo SINE Alu -13 299 1 2626 187 129 44 chr9 4558401 4558835 -113303792 - L1MD1 LINE L1 -858 5384 4988 1934 116 13 51 chr9 4558835 4559146 -113303481 - AluSx SINE Alu -13 299 1 2626 187 129 44 chr9 4559146 4559439 -113303188 - L1MD1 LINE L1 -1254 4988 4477 1466 173 3 90 chr9 4559737 4560069 -113302558 - AluJo SINE Alu 0 305 1 298 120 0 40 chr9 4562076 4562126 -113300501 + AluJb SINE Alu 85 132 -170 728 181 52 26 chr9 4562170 4562325 -113300302 + FRAM SINE Alu 9 167 -9 5640 231 72 36 chr9 4562776 4562945 -113299682 - L1MD1 LINE L1 -1656 4490 4329 471 48 0 0 chr9 4562945 4563007 -113299620 + (TG)n Simple_repeat Simple_repeat 2 63 0 5640 231 72 36 chr9 4563007 4563517 -113299110 - L1MD1 LINE L1 -1817 4329 3839 426 39 0 0 chr9 4563517 4563569 -113299058 + (CA)n Simple_repeat Simple_repeat 2 53 0 5640 231 72 36 chr9 4563569 4564447 -113298180 - L1MD1 LINE L1 -2307 3839 2839 2320 103 3 0 chr9 4564447 4564747 -113297880 - AluSp SINE Alu -11 302 2 5640 231 72 36 chr9 4564747 4565229 -113297398 - L1MD1 LINE L1 -3307 2839 2376 1978 140 0 10 chr9 4565229 4565529 -113297098 - AluJb SINE Alu -6 306 10 439 260 95 22 chr9 4565969 4566230 -113296397 - L1MC4a LINE L1 -302 5819 5613 2267 99 3 3 chr9 4566235 4566537 -113296090 - AluSc SINE Alu -7 302 1 2192 122 0 34 chr9 4566737 4567057 -113295570 - AluSx SINE Alu -3 309 1 1929 245 129 21 chr9 4567114 4567827 -113294800 - L1ME3A LINE L1 -4 6166 5377 994 94 61 39 chr9 4567830 4568010 -113294617 - L1MA5 LINE L1 -2 6298 6115 1318 119 40 44 chr9 4568010 4568236 -113294391 + AluJo SINE Alu 85 309 -3 1890 146 46 15 chr9 4568236 4569350 -113293277 - L1MA5 LINE L1 -180 6120 4910 618 195 0 18 chr9 4569356 4569469 -113293158 - AluJo SINE Alu -178 134 24 2717 161 49 60 chr9 4569472 4570116 -113292511 - L1ME3A LINE L1 -1397 4749 4059 6829 46 49 3 chr9 4570116 4571083 -113291544 + L1PA6 LINE L1 5143 6148 -6 2717 161 49 60 chr9 4571083 4571214 -113291413 - L1ME3A LINE L1 -2087 4059 3928 1382 197 66 4 chr9 4571221 4571495 -113291132 - AluJo SINE Alu -21 291 1 3717 202 39 6 chr9 4571495 4572394 -113290233 - L1M2 LINE L1 -4029 3139 2211 2859 200 136 10 chr9 4572424 4573044 -113289583 - L1M2 LINE L1 -6460 708 11 478 240 145 12 chr9 4573041 4573283 -113289344 - L1M4 LINE L1 -749 5397 5124 * 25 0 0 0 chr9 4573476 4573501 -113289126 + AT_rich Low_complexity Low_complexity 1 25 0 2429 66 0 3 chr9 4573755 4574044 -113288583 - AluY SINE Alu -23 288 1 236 29 0 29 chr9 4574066 4574100 -113288527 + (TTTTC)n Simple_repeat Simple_repeat 4 36 0 1118 239 79 31 chr9 4574137 4574555 -113288072 - LTR56 LTR ERV1 0 445 8 1323 189 58 0 chr9 4574556 4574842 -113287785 + AluJo SINE Alu 10 310 0 228 333 68 8 chr9 4575353 4575470 -113287157 - MIR SINE MIR -62 146 48 1915 183 86 49 chr9 4575741 4576227 -113286400 + LTR54 LTR ERV1 7 510 0 397 324 7 7 chr9 4576227 4576369 -113286258 - MIR SINE MIR -60 202 61 1781 147 35 7 chr9 4576455 4576741 -113285886 + MER49 LTR ERV1 1 294 -629 1648 179 16 52 chr9 4576761 4576834 -113285793 + MER4D LTR ERV1 554 628 -275 1898 174 26 0 chr9 4576834 4577138 -113285489 - AluJo SINE Alu 0 312 1 1648 179 16 52 chr9 4577138 4577427 -113285200 + MER4D LTR ERV1 628 903 0 2116 145 0 3 chr9 4577878 4578189 -113284438 + AluJo SINE Alu 1 310 -2 410 206 20 0 chr9 4578211 4578313 -113284314 + GA-rich Low_complexity Low_complexity 1 104 0 2193 104 23 7 chr9 4578414 4578721 -113283906 - AluSp SINE Alu -1 312 1 1415 161 0 0 chr9 4578769 4578987 -113283640 - AluJb SINE Alu -94 218 1 510 302 113 8 chr9 4579026 4579274 -113283353 - L1MC4a LINE L1 -1865 5943 5670 256 250 0 16 chr9 4579278 4579342 -113283285 - L1MC4a LINE L1 -2177 5631 5569 485 148 23 0 chr9 4579342 4579430 -113283197 + LTR23 LTR ERV1 1 90 -347 2270 117 0 0 chr9 4579430 4579739 -113282888 + AluSx SINE Alu 1 309 -3 1900 159 0 7 chr9 4579814 4580192 -113282435 - AluSx SINE Alu 0 376 1 1139 183 116 12 chr9 4580287 4580538 -113282089 + LTR23 LTR ERV1 161 437 0 995 229 25 55 chr9 4580538 4580865 -113281762 - L1MC4a LINE L1 -2236 5572 5256 394 221 0 0 chr9 4580867 4580935 -113281692 - MER63 DNA MER1_type 0 1062 995 341 241 13 13 chr9 4580956 4581035 -113281592 - MER63 DNA MER1_type -70 766 688 322 341 40 44 chr9 4581073 4581325 -113281302 - L1MC4a LINE L1 -883 5263 5013 1125 195 65 89 chr9 4581389 4581758 -113280869 + MLT1A2 LTR MaLR 15 374 0 711 251 182 19 chr9 4581945 4582252 -113280375 + MLT1A1 LTR MaLR 1 357 -8 210 204 0 0 chr9 4582252 4582296 -113280331 + L2 LINE L2 2498 2541 -773 2273 119 0 3 chr9 4583092 4583403 -113279224 - AluSg SINE Alu 0 310 1 1812 252 105 16 chr9 4583419 4583983 -113278644 + L2 LINE L2 1928 2541 -773 1591 152 3 69 chr9 4584476 4584766 -113277861 + AluJo SINE Alu 12 282 -30 216 0 0 0 chr9 4584769 4584793 -113277834 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 437 226 110 108 chr9 4584845 4585454 -113277173 + L1MD3 LINE L1 6535 7141 -854 1486 128 83 55 chr9 4585454 4585743 -113276884 - AluJo SINE Alu -15 297 1 437 226 110 108 chr9 4585743 4586483 -113276144 + L1MD3 LINE L1 7141 7994 -1 183 318 91 0 chr9 4586483 4586549 -113276078 + L2 LINE L2 2545 2616 -698 1285 246 58 31 chr9 4586550 4587056 -113275571 - MLT1G LTR MaLR -49 518 1 520 274 73 22 chr9 4587056 4587235 -113275392 + L2 LINE L2 2790 2977 -337 1137 168 0 0 chr9 4587240 4587413 -113275214 - AluSg/x SINE Alu -8 304 132 249 33 0 0 chr9 4587413 4587443 -113275184 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 2004 124 0 31 chr9 4587443 4587734 -113274893 - AluSx SINE Alu -30 282 1 1884 135 3 64 chr9 4587744 4588055 -113274572 - AluJb SINE Alu -20 292 1 2051 209 88 2 chr9 4588237 4588667 -113273960 - MLT1C LTR MaLR 0 467 1 1895 134 31 0 chr9 4588750 4589041 -113273586 + AluSx SINE Alu 1 300 -12 265 232 0 0 chr9 4589064 4589120 -113273507 - L2 LINE L2 -4 3309 3254 2024 134 3 17 chr9 4589782 4590080 -113272547 + AluSq SINE Alu 2 295 -18 2186 91 39 0 chr9 4590083 4590368 -113272259 + AluSp SINE Alu 1 296 -17 372 274 99 125 chr9 4591222 4592300 -113270327 - L1M2 LINE L1 -5599 1250 489 215 61 30 0 chr9 4592449 4592482 -113270145 + (TTTC)n Simple_repeat Simple_repeat 3 36 0 230 188 47 16 chr9 4592701 4592765 -113269862 + L1MB7 LINE L1 6119 6184 0 264 100 0 0 chr9 4592879 4592919 -113269708 + (T)n Simple_repeat Simple_repeat 1 40 0 1634 88 0 0 chr9 4593112 4593328 -113269299 - AluY SINE Alu -95 216 1 1657 159 32 11 chr9 4593498 4593781 -113268846 + AluSq SINE Alu 15 303 -10 1914 148 3 19 chr9 4593905 4594216 -113268411 + AluSx SINE Alu 1 306 -6 526 269 91 62 chr9 4594216 4594512 -113268115 - L1ME4a LINE L1 -20 6101 5786 2248 106 0 0 chr9 4594512 4594804 -113267823 + AluSq SINE Alu 1 292 -21 526 269 91 62 chr9 4594804 4594971 -113267656 - L1ME4a LINE L1 -335 5786 5625 244 261 93 81 chr9 4595173 4595236 -113267391 - MIR3 SINE MIR -2 206 145 1605 131 26 22 chr9 4595236 4595504 -113267123 - AluSx SINE Alu -8 304 36 244 261 93 81 chr9 4595504 4595601 -113267026 - MIR3 SINE MIR -63 145 44 1799 149 24 7 chr9 4596000 4596288 -113266339 + AluJo SINE Alu 1 293 -19 276 333 8 50 chr9 4596295 4596415 -113266212 + MIR3 SINE MIR 87 201 -7 739 138 0 0 chr9 4596724 4596840 -113265787 - L1MB8 LINE L1 0 6178 6063 2322 106 0 0 chr9 4596842 4597144 -113265483 - AluSx SINE Alu -10 302 1 45 34 0 0 chr9 4597150 4597209 -113265418 + AT_rich Low_complexity Low_complexity 1 59 0 1866 136 45 14 chr9 4597209 4597495 -113265132 + AluSx SINE Alu 1 295 -17 315 275 11 0 chr9 4597496 4597587 -113265040 + L1MC4 LINE L1 6614 6705 -1337 * 336 238 71 0 chr9 4597529 4597613 -113265014 - L1MC4 LINE L1 -1339 6703 6614 495 123 0 0 chr9 4597616 4597775 -113264852 + (TA)n Simple_repeat Simple_repeat 1 159 0 678 170 0 18 chr9 4597775 4597887 -113264740 - AluJb SINE Alu -201 111 2 22 0 0 0 chr9 4597888 4597910 -113264717 + AT_rich Low_complexity Low_complexity 1 22 0 1790 163 11 30 chr9 4597915 4598276 -113264351 - L1MB8 LINE L1 -109 6069 5716 198 208 0 0 chr9 4598457 4598505 -113264122 + (TCCA)n Simple_repeat Simple_repeat 1 48 0 1736 199 47 24 chr9 4598628 4599009 -113263618 - MLT1B LTR MaLR 0 390 1 204 314 97 8 chr9 4599340 4599464 -113263163 - L2 LINE L2 -1481 1833 1699 1573 146 8 16 chr9 4599872 4600119 -113262508 + AluJo SINE Alu 6 250 -62 2240 174 98 5 chr9 4600538 4600765 -113261862 - Tigger2a DNA MER2_type -2274 434 230 1782 174 10 10 chr9 4600765 4601075 -113261552 + AluJo SINE Alu 1 310 -2 2240 174 98 5 chr9 4601075 4601243 -113261384 - Tigger2a DNA MER2_type -2478 230 2 2806 102 10 5 chr9 4601506 4601900 -113260727 + L1PA13 LINE L1 5766 6161 -2 1001 158 0 0 chr9 4602387 4602539 -113260088 - AluJb SINE Alu -5 307 156 21 36 0 0 chr9 4602547 4602575 -113260052 + AT_rich Low_complexity Low_complexity 1 28 0 3401 149 16 17 chr9 4602647 4603161 -113259466 - L1MB7 LINE L1 0 6184 5670 1525 183 27 23 chr9 4603161 4603462 -113259165 - AluJo SINE Alu -10 302 1 3401 149 16 17 chr9 4603462 4603524 -113259103 - L1MB7 LINE L1 -514 5670 5609 836 178 34 0 chr9 4603544 4603690 -113258937 - FRAM SINE Alu -31 145 1 2164 119 3 0 chr9 4603705 4603999 -113258628 + AluSq SINE Alu 1 295 -18 405 177 0 0 chr9 4603999 4604078 -113258549 + (TA)n Simple_repeat Simple_repeat 1 79 0 339 300 0 0 chr9 4604080 4604170 -113258457 + L1MC4 LINE L1 6614 6703 -1339 771 171 0 0 chr9 4604183 4604300 -113258327 - FLAM_C SINE Alu -15 118 2 677 192 16 0 chr9 4604301 4604423 -113258204 - L1MB8 LINE L1 -558 5616 5490 2122 122 3 3 chr9 4604423 4604726 -113257901 - AluSx SINE Alu -9 303 1 677 192 16 0 chr9 4604726 4604740 -113257887 - L1MB8 LINE L1 -684 5490 5478 16175 112 23 6 chr9 4604751 4607103 -113255524 + Tigger1 DNA MER2_type 26 2418 0 1088 159 78 31 chr9 4607107 4607396 -113255231 - L1MB8 LINE L1 -694 5484 5188 975 65 16 8 chr9 4607405 4607529 -113255098 - AluSq/x SINE Alu -187 125 1 1474 229 23 30 chr9 4607529 4607699 -113254928 - L1MB8 LINE L1 -949 5197 5027 2260 92 17 7 chr9 4607699 4607994 -113254633 + AluSg SINE Alu 1 298 -12 1474 229 23 30 chr9 4607994 4608216 -113254411 - L1MB8 LINE L1 -1119 5027 4808 1547 156 0 0 chr9 4608218 4608443 -113254184 - AluJb SINE Alu -11 301 77 460 241 86 0 chr9 4608453 4608569 -113254058 - L1MB8 LINE L1 -1941 4205 4080 247 276 35 35 chr9 4609040 4609156 -113253471 + L1ME LINE L1 5549 5664 -457 400 229 42 35 chr9 4609752 4609896 -113252731 - L1ME4a LINE L1 -56 6065 5921 1992 117 3 47 chr9 4609924 4610241 -113252386 - AluSx SINE Alu -9 303 1 219 294 71 24 chr9 4610636 4610721 -113251906 + MIR3 SINE MIR 90 178 -30 255 231 87 29 chr9 4611143 4611247 -113251380 - L2 LINE L2 -91 3222 3113 2257 108 3 0 chr9 4611257 4611553 -113251074 + AluSx SINE Alu 1 297 -15 2019 143 0 7 chr9 4611594 4611894 -113250733 - AluSx SINE Alu -13 299 2 1929 137 3 20 chr9 4612314 4612614 -113250013 - AluJo SINE Alu -17 295 1 1978 115 20 7 chr9 4612937 4613232 -113249395 - AluSx SINE Alu -13 299 1 773 238 40 62 chr9 4613271 4613544 -113249083 - MLT2B1 LTR ERVL -253 267 1 201 179 26 0 chr9 4613663 4613702 -113248925 + CT-rich Low_complexity Low_complexity 2 41 0 230 229 43 29 chr9 4614077 4614147 -113248480 - L2 LINE L2 -2 3270 3200 340 248 19 38 chr9 4614683 4614788 -113247839 - MLT1K LTR MaLR -27 561 459 1856 173 127 0 chr9 4615132 4615455 -113247172 - MER47A DNA MER2_type 0 366 3 593 233 219 5 chr9 4615791 4616006 -113246621 + MIR SINE MIR 2 262 0 1598 177 23 23 chr9 4616068 4616367 -113246260 - AluJo SINE Alu -13 299 1 492 296 46 15 chr9 4616468 4616664 -113245963 + MIR SINE MIR 61 262 0 182 231 96 0 chr9 4616676 4616728 -113245899 - L2 LINE L2 -45 3227 3171 839 232 170 26 chr9 4616818 4617220 -113245407 - MLT1K LTR MaLR -37 551 20 1733 174 7 20 chr9 4617319 4617624 -113245003 + AluJb SINE Alu 1 301 -11 2242 111 7 0 chr9 4617772 4618079 -113244548 - AluSx SINE Alu -3 309 1 441 296 0 0 chr9 4618820 4619127 -113243500 + (TG)n Simple_repeat Simple_repeat 1 307 0 260 314 0 0 chr9 4619606 4619676 -113242951 + MIR SINE MIR 180 249 -13 1627 178 39 0 chr9 4622089 4622375 -113240252 - AluJo SINE Alu -11 301 5 2520 26 0 40 chr9 4622497 4622800 -113239827 + AluY SINE Alu 1 291 -20 243 0 0 0 chr9 4623177 4623204 -113239423 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 2072 80 0 4 chr9 4624107 4624370 -113238257 - AluSc SINE Alu -47 262 1 28 29 0 0 chr9 4624620 4624655 -113237972 + AT_rich Low_complexity Low_complexity 1 35 0 198 200 67 50 chr9 4627110 4627170 -113235457 + MIR SINE MIR 2 62 -200 23 0 0 0 chr9 4627815 4627838 -113234789 + AT_rich Low_complexity Low_complexity 1 23 0 359 269 107 13 chr9 4628711 4628860 -113233767 + MIR SINE MIR 56 218 -44 2497 48 0 25 chr9 4630102 4630416 -113232211 - AluY SINE Alu -5 306 1 636 244 73 6 chr9 4632186 4632350 -113230277 + MIR SINE MIR 85 259 -3 1916 159 28 0 chr9 4632568 4632857 -113229770 + AluJo SINE Alu 1 297 -15 33 25 0 0 chr9 4633006 4633046 -113229581 + AT_rich Low_complexity Low_complexity 1 40 0 274 257 0 0 chr9 4633069 4633143 -113229484 - L1ME4a LINE L1 -70 6051 5978 1035 154 135 5 chr9 4633585 4633793 -113228834 - MER46A DNA MER2_type 0 236 2 1208 141 71 24 chr9 4633899 4634196 -113228431 - Charlie1 DNA MER1_type -31 2730 2420 625 210 29 0 chr9 4634194 4634332 -113228295 - Charlie1 DNA MER1_type -2615 146 5 * 450 261 85 13 chr9 4634335 4634488 -113228139 - L1ME4a LINE L1 -505 5657 5494 300 228 97 28 chr9 4634595 4634740 -113227887 - L1ME4a LINE L1 -254 5867 5713 351 293 75 45 chr9 4634741 4634874 -113227753 + L2 LINE L2 3136 3272 0 22 0 0 0 chr9 4635288 4635310 -113227317 + AT_rich Low_complexity Low_complexity 1 22 0 710 179 0 30 chr9 4636519 4636653 -113225974 - FLAM_C SINE Alu -2 131 2 2096 99 18 7 chr9 4636930 4637212 -113225415 + AluSx SINE Alu 1 285 -27 1481 194 3 26 chr9 4637219 4637523 -113225104 + AluJo SINE Alu 1 297 -15 748 189 69 19 chr9 4637662 4637821 -113224806 + AluJo SINE Alu 122 288 -24 2249 117 3 0 chr9 4638127 4638425 -113224202 - AluSg SINE Alu -11 299 1 1617 209 3 0 chr9 4638640 4638927 -113223700 + AluJo SINE Alu 5 292 -20 875 236 100 9 chr9 4639026 4639255 -113223372 + MIR SINE MIR 1 250 -12 22 0 0 0 chr9 4639533 4639555 -113223072 + AT_rich Low_complexity Low_complexity 1 22 0 1693 197 3 3 chr9 4639555 4639855 -113222772 - AluJb SINE Alu -12 300 1 377 208 176 0 chr9 4640283 4640408 -113222219 - L1ME4a LINE L1 -1 6120 5974 2370 76 0 0 chr9 4640454 4640743 -113221884 + AluSq SINE Alu 9 297 -16 30 0 0 0 chr9 4641139 4641169 -113221458 + AT_rich Low_complexity Low_complexity 1 30 0 2166 78 30 0 chr9 4641546 4641842 -113220785 + L1PA12 LINE L1 5860 6164 -4 365 316 23 11 chr9 4642067 4642244 -113220383 + ERVL LTR ERVL 2781 2959 -2805 1011 303 63 30 chr9 4642397 4642922 -113219705 + ERVL LTR ERVL 4097 4638 -1126 605 269 48 32 chr9 4643078 4643327 -113219300 + ERVL LTR ERVL 4663 4915 -849 22 35 0 0 chr9 4643504 4643533 -113219094 + AT_rich Low_complexity Low_complexity 1 29 0 295 332 101 10 chr9 4643699 4643898 -113218729 + L2 LINE L2 2835 3051 -221 22 56 0 0 chr9 4644224 4644260 -113218367 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr9 4644653 4644675 -113217952 + AT_rich Low_complexity Low_complexity 1 22 0 2256 89 0 7 chr9 4644718 4645009 -113217618 + AluSg SINE Alu 1 289 -21 2197 138 0 0 chr9 4645314 4645619 -113217008 - AluJo SINE Alu -7 305 1 1638 127 58 7 chr9 4645939 4646247 -113216380 - MER33 DNA MER1_type 0 324 1 1663 183 10 28 chr9 4646845 4647135 -113215492 - AluJb SINE Alu -27 285 1 279 269 0 26 chr9 4647417 4647495 -113215132 + MIR3 SINE MIR 97 172 -36 217 328 0 0 chr9 4648369 4648427 -113214200 + L2 LINE L2 3207 3264 -8 2135 124 0 0 chr9 4648729 4649012 -113213615 - AluSc SINE Alu -26 283 1 225 361 0 0 chr9 4649409 4649481 -113213146 + L2 LINE L2 2798 2869 -445 229 139 66 7 chr9 4649865 4650016 -113212611 + (TA)n Simple_repeat Simple_repeat 2 161 0 202 146 62 0 chr9 4650018 4650066 -113212561 + (TATAA)n Simple_repeat Simple_repeat 3 53 0 2104 115 0 50 chr9 4650243 4650391 -113212236 + AluSx SINE Alu 1 126 -186 2287 85 7 3 chr9 4650391 4650686 -113211941 + AluY SINE Alu 1 296 -15 2104 115 0 50 chr9 4650686 4650860 -113211767 + AluSx SINE Alu 126 307 -5 1595 85 42 5 chr9 4651367 4651579 -113211048 - AluSp SINE Alu -19 294 75 326 274 59 39 chr9 4651584 4651686 -113210941 + MIR3 SINE MIR 3 106 -102 323 329 129 7 chr9 4654000 4654140 -113208487 - MIR SINE MIR -89 173 17 286 315 88 35 chr9 4654275 4654615 -113208012 + L1MC4a LINE L1 5538 5895 -1913 342 0 0 0 chr9 4654675 4654713 -113207914 + (TG)n Simple_repeat Simple_repeat 2 39 0 258 231 0 0 chr9 4655052 4655104 -113207523 + MIR SINE MIR 204 255 -7 1212 290 159 15 chr9 4655105 4655716 -113206911 + L2 LINE L2 2036 2734 -580 291 296 133 0 chr9 4655727 4655862 -113206765 - MLT1L LTR MaLR -13 602 450 1566 139 120 8 chr9 4655863 4656129 -113206498 + AluSg1 SINE Alu 1 296 -13 353 147 0 15 chr9 4656129 4656197 -113206430 + (GGGAA)n Simple_repeat Simple_repeat 2 68 0 498 293 26 60 chr9 4656197 4656463 -113206164 - MLT1L LTR MaLR -153 462 206 328 250 11 11 chr9 4656487 4656579 -113206048 - MLT1L LTR MaLR -523 92 1 2270 88 0 29 chr9 4656633 4656940 -113205687 - AluSx SINE Alu -14 298 1 779 319 74 32 chr9 4656946 4657417 -113205210 + L2 LINE L2 2823 3313 0 716 200 8 0 chr9 4657609 4657729 -113204898 - FLAM_A SINE Alu -12 121 1 2419 83 0 0 chr9 4658273 4658575 -113204052 + AluY SINE Alu 1 302 -9 1626 183 14 10 chr9 4658773 4659062 -113203565 - AluJo SINE Alu -22 290 1 251 259 41 104 chr9 4659083 4659390 -113203237 - L1MC5 LINE L1 -27 8015 7685 2239 116 0 3 chr9 4659390 4659693 -113202934 + AluSp SINE Alu 1 302 -11 251 259 41 104 chr9 4659693 4659893 -113202734 - L1MC5 LINE L1 -357 7685 7474 2287 88 0 7 chr9 4659918 4660202 -113202425 - AluSp SINE Alu -31 282 1 276 100 0 0 chr9 4660203 4660243 -113202384 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 786 182 8 0 chr9 4660243 4660375 -113202252 - AluJb SINE Alu -30 282 150 260 211 40 0 chr9 4660406 4660482 -113202145 - L1MC5 LINE L1 -553 7408 7330 629 212 62 36 chr9 4660482 4660626 -113202001 + MER3 DNA MER1_type 1 154 -55 2112 109 0 3 chr9 4660626 4660931 -113201696 + AluSq SINE Alu 1 304 0 629 212 62 36 chr9 4660931 4660978 -113201649 + MER3 DNA MER1_type 154 198 -11 329 274 10 20 chr9 4661167 4661269 -113201358 + L1MCa LINE L1 1968 2068 -4358 2256 111 3 0 chr9 4661286 4661592 -113201035 - AluSx SINE Alu -5 307 1 660 263 158 33 chr9 4662785 4663129 -113199498 - L1MC4a LINE L1 -1869 5939 5537 1645 174 126 51 chr9 4663129 4663338 -113199289 + MLT1D LTR MaLR 1 193 -312 2399 110 0 0 chr9 4663338 4663647 -113198980 + AluSx SINE Alu 1 309 -3 1645 174 126 51 chr9 4663647 4663907 -113198720 + MLT1D LTR MaLR 193 505 0 660 263 158 33 chr9 4663907 4663961 -113198666 - L1MC4a LINE L1 -2271 5537 5491 26 82 0 0 chr9 4664000 4664061 -113198566 + AT_rich Low_complexity Low_complexity 1 61 0 287 299 226 0 chr9 4664859 4665076 -113197551 - L2 LINE L2 -1046 2268 2003 479 296 145 0 chr9 4665183 4665369 -113197258 + MIR SINE MIR 47 259 -3 300 298 132 85 chr9 4670059 4670543 -113192084 - L1M2 LINE L1 -5926 923 417 514 186 0 35 chr9 4671863 4671976 -113190651 - L1PA10 LINE L1 -1 6167 6059 8227 47 1 2 chr9 4671976 4673691 -113188936 - L1PA6 LINE L1 -154 6000 4289 1496 128 163 8 chr9 4674047 4674305 -113188322 - AluSg1 SINE Alu -11 298 1 907 233 124 8 chr9 4674799 4675048 -113187579 - MLT1C LTR MaLR 0 467 190 584 220 61 0 chr9 4675066 4675198 -113187429 + MER93b LTR ERV1 18 157 -216 624 227 59 74 chr9 4675198 4675454 -113187173 + MER93b LTR ERV1 117 368 -5 921 162 30 35 chr9 4675484 4675682 -113186945 - MLT1C LTR MaLR -270 197 1 185 357 0 0 chr9 4676174 4676230 -113186397 - L2 LINE L2 -3 3269 3214 615 27 0 0 chr9 4676505 4676578 -113186049 + (TTCC)n Simple_repeat Simple_repeat 3 75 0 1733 173 0 0 chr9 4676580 4676858 -113185769 - AluJb SINE Alu -33 279 2 2360 108 0 6 chr9 4677165 4677479 -113185148 + AluSx SINE Alu 1 312 0 2298 167 28 7 chr9 4677562 4677998 -113184629 - L1MB7 LINE L1 -124 6060 5616 3791 117 130 7 chr9 4678041 4678740 -113183887 + LTR1 LTR ERV1 1 785 0 7236 181 67 34 chr9 4678740 4679053 -113183574 - L1MB7 LINE L1 -565 5619 5318 1810 168 3 25 chr9 4679053 4679368 -113183259 - AluJo SINE Alu -4 308 1 7236 181 67 34 chr9 4679368 4680145 -113182482 - L1MB7 LINE L1 -866 5318 4568 2181 116 30 0 chr9 4680145 4680448 -113182179 - AluSp SINE Alu -1 312 1 7236 181 67 34 chr9 4680448 4680608 -113182019 - L1MB7 LINE L1 -1616 4568 4415 226 146 0 0 chr9 4680608 4680656 -113181971 - AluSp SINE Alu 0 303 256 1631 99 0 5 chr9 4680656 4680877 -113181750 - AluSp SINE Alu -93 220 1 7236 181 67 34 chr9 4680877 4681798 -113180829 - L1MB7 LINE L1 -1768 4416 3341 988 207 0 16 chr9 4681817 4682005 -113180622 + AluJb SINE Alu 108 292 -20 1970 143 27 0 chr9 4682015 4682140 -113180487 + AluSx SINE Alu 2 122 -190 459 0 0 0 chr9 4682140 4682191 -113180436 + (CA)n Simple_repeat Simple_repeat 2 52 0 1970 143 27 0 chr9 4682191 4682358 -113180269 + AluSx SINE Alu 122 302 -10 943 210 8 8 chr9 4682360 4682627 -113180000 - L1MB7 LINE L1 -2817 3329 3063 580 286 10 41 chr9 4683382 4683578 -113179049 + MIR SINE MIR 2 191 -71 4521 93 10 42 chr9 4683597 4683920 -113178707 + L1PB1 LINE L1 5465 5797 -354 297 0 0 0 chr9 4683920 4683953 -113178674 + (TG)n Simple_repeat Simple_repeat 2 34 0 4521 93 10 42 chr9 4683953 4684282 -113178345 + L1PB1 LINE L1 5797 6096 -55 2349 42 0 3 chr9 4684282 4684598 -113178029 - AluY SINE Alu 0 315 1 4521 93 10 42 chr9 4684598 4684653 -113177974 + L1PB1 LINE L1 6096 6151 0 2091 147 0 0 chr9 4684881 4685180 -113177447 + AluSx SINE Alu 1 299 -13 2215 121 3 0 chr9 4685401 4685706 -113176921 - AluSx SINE Alu -6 306 1 1965 115 82 6 chr9 4685937 4686267 -113176360 - L1PA13 LINE L1 -1 6162 5808 198 71 0 0 chr9 4686369 4686397 -113176230 + (TTA)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chr9 4686774 4686813 -113175814 + AT_rich Low_complexity Low_complexity 1 39 0 198 0 0 0 chr9 4686870 4686892 -113175735 + (TG)n Simple_repeat Simple_repeat 2 23 0 386 259 12 0 chr9 4686930 4687015 -113175612 + MER58B DNA MER1_type 4 89 -252 1814 182 43 0 chr9 4687015 4687383 -113175244 - L1MB7 LINE L1 -16 6168 5785 1966 111 40 12 chr9 4687383 4687708 -113174919 + MSTC LTR MaLR 95 428 0 604 162 115 0 chr9 4687708 4687856 -113174771 - L1MB7 LINE L1 -448 5736 5572 1000 170 71 20 chr9 4687856 4688109 -113174518 + MER58B DNA MER1_type 76 341 0 351 0 0 0 chr9 4688291 4688330 -113174297 + (TG)n Simple_repeat Simple_repeat 1 39 0 252 0 0 0 chr9 4688329 4688357 -113174270 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1298 166 89 76 chr9 4688649 4688951 -113173676 - AluJb SINE Alu -6 306 1 1994 136 0 19 chr9 4688985 4689293 -113173334 - AluSx SINE Alu -10 302 1 2040 135 0 0 chr9 4689722 4690010 -113172617 + AluSg SINE Alu 13 300 -10 1701 170 18 0 chr9 4690948 4691250 -113171377 + AluJb SINE Alu 1 307 0 1309 168 31 8 chr9 4691343 4691599 -113171028 - MER2 DNA MER2_type -1 344 83 538 194 0 20 chr9 4691656 4691754 -113170873 - MER2 DNA MER2_type -248 97 2 391 272 34 60 chr9 4693025 4693199 -113169428 + MIR SINE MIR 28 197 -11 531 340 15 15 chr9 4693870 4694067 -113168560 - MIR SINE MIR -34 228 32 1265 102 0 0 chr9 4694077 4694243 -113168384 + AluSg/x SINE Alu 145 310 0 2079 115 0 3 chr9 4694503 4694812 -113167815 + AluSq SINE Alu 1 308 0 420 250 24 40 chr9 4694928 4695052 -113167575 + L2 LINE L2 3151 3272 0 304 291 13 0 chr9 4695082 4695161 -113167466 - MIR3 SINE MIR -20 188 109 237 343 14 0 chr9 4695231 4695304 -113167323 - L2 LINE L2 -1 3312 3239 851 302 74 30 chr9 4695451 4696122 -113166505 - L2 LINE L2 -18 3295 2590 614 244 67 0 chr9 4696550 4696759 -113165868 - MER20B DNA MER1_type 0 783 561 929 216 140 84 chr9 4696778 4697171 -113165456 - MER20B DNA MER1_type -366 417 3 221 336 136 18 chr9 4697225 4697335 -113165292 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4699106 4699127 -113163500 + AT_rich Low_complexity Low_complexity 1 21 0 2380 87 0 0 chr9 4700404 4700702 -113161925 - AluSx SINE Alu -14 298 1 1304 125 100 0 chr9 4700781 4700981 -113161646 + AluSg/x SINE Alu 86 305 -7 602 332 16 24 chr9 4700982 4701235 -113161392 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4701696 4701719 -113160908 + AT_rich Low_complexity Low_complexity 1 23 0 832 231 95 18 chr9 4702032 4702253 -113160374 + MIR SINE MIR 9 246 -16 1585 240 41 7 chr9 4702720 4703133 -113159494 - L1ME1 LINE L1 -25 6141 5715 278 148 0 82 chr9 4703135 4703196 -113159431 + MIR SINE MIR 120 175 -87 231 219 16 0 chr9 4703202 4703266 -113159361 - L1MC4 LINE L1 -1323 6719 6655 622 258 145 14 chr9 4703484 4703705 -113158922 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4704264 4704288 -113158339 + AT_rich Low_complexity Low_complexity 1 24 0 1724 127 0 4 chr9 4704302 4704561 -113158066 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4704566 4704603 -113158024 + AT_rich Low_complexity Low_complexity 1 37 0 3804 100 32 12 chr9 4704607 4705208 -113157419 - L1MA3 LINE L1 -1 6304 5692 467 156 13 0 chr9 4705853 4705930 -113156697 - AluJ/FLAM SINE Alu -228 84 7 519 240 20 41 chr9 4706096 4706292 -113156335 - L1ME4a LINE L1 -188 5933 5742 1044 241 130 50 chr9 4706297 4707033 -113155594 - LTR50 LTR ERVL 0 795 1 237 150 0 0 chr9 4707092 4707132 -113155495 - L1ME4a LINE L1 -459 5662 5623 2293 111 0 0 chr9 4708267 4708565 -113154062 - AluSx SINE Alu -9 303 6 346 320 74 25 chr9 4708590 4708834 -113153793 - L1ME4a LINE L1 -49 6072 5817 2403 73 0 0 chr9 4709701 4710018 -113152609 - AluSp SINE Alu 0 317 1 318 311 75 12 chr9 4710251 4710412 -113152215 - L3b LINE CR1 -212 1371 1201 581 188 38 0 chr9 4711082 4711215 -113151412 - Charlie1 DNA MER1_type -5 2756 2619 * 1060 173 17 35 chr9 4711208 4711228 -113151399 - Charlie1 DNA MER1_type -2534 227 208 2373 94 3 0 chr9 4711228 4711527 -113151100 + AluSp SINE Alu 1 300 -13 1060 173 17 35 chr9 4711527 4711737 -113150890 - Charlie1 DNA MER1_type -2553 208 1 208 260 29 96 chr9 4712278 4712382 -113150245 - MIR SINE MIR -75 133 37 712 196 141 0 chr9 4712470 4712633 -113149994 - MER5A DNA MER1_type 0 189 4 2278 91 3 3 chr9 4713571 4713867 -113148760 + AluSx SINE Alu 14 309 -3 313 238 114 0 chr9 4715380 4715485 -113147142 - L1ME4a LINE L1 -27 6094 5978 487 246 36 0 chr9 4715609 4715719 -113146908 - MER81 DNA DNA 0 114 1 2357 92 3 0 chr9 4716131 4716435 -113146192 + AluSp SINE Alu 1 305 -8 212 270 54 14 chr9 4716636 4716710 -113145917 + MIR SINE MIR 39 115 -93 1838 145 24 17 chr9 4716730 4717019 -113145608 - AluJb SINE Alu -21 291 1 227 179 30 60 chr9 4717019 4717086 -113145541 + MIR SINE MIR 104 168 -94 22 0 0 0 chr9 4717729 4717751 -113144876 + AT_rich Low_complexity Low_complexity 1 22 0 451 231 11 0 chr9 4718290 4718381 -113144246 - MER81 DNA DNA -21 93 2 1946 147 3 0 chr9 4719133 4719425 -113143202 + AluSx SINE Alu 1 293 -19 1993 152 7 7 chr9 4719760 4720070 -113142557 - AluSx SINE Alu -2 310 1 270 116 0 0 chr9 4720204 4720247 -113142380 + (TGAA)n Simple_repeat Simple_repeat 3 45 0 290 355 80 57 chr9 4720247 4720735 -113141892 - L2 LINE L2 -2 3311 2813 1308 183 141 8 chr9 4720742 4721004 -113141623 + AluJo SINE Alu 1 297 -5 624 263 0 15 chr9 4721004 4721137 -113141490 + AluJo/FRAM SINE Alu 135 265 -47 25 0 0 0 chr9 4721165 4721190 -113141437 + AT_rich Low_complexity Low_complexity 1 25 0 40713 32 24 1 chr9 4721204 4727216 -113135411 - L1PA3 LINE L1 0 6155 2 21 0 0 0 chr9 4727225 4727246 -113135381 + AT_rich Low_complexity Low_complexity 1 21 0 225 263 66 46 chr9 4727260 4727412 -113135215 - L1ME4a LINE L1 -6 6115 5961 313 301 38 30 chr9 4727420 4727553 -113135074 - L1ME4a LINE L1 -193 5928 5795 208 208 51 168 chr9 4727721 4727918 -113134709 - L2 LINE L2 -107 3165 2992 730 163 16 8 chr9 4728469 4728598 -113134029 + FLAM_C SINE Alu 1 130 -3 189 254 102 0 chr9 4728920 4728979 -113133648 + L3 LINE CR1 1189 1253 -324 486 283 133 52 chr9 4729022 4729422 -113133205 + L2 LINE L2 2828 3259 -54 2272 107 17 0 chr9 4729566 4729866 -113132761 - AluSg SINE Alu -5 305 1 648 191 27 48 chr9 4730079 4730226 -113132401 - MIR SINE MIR -55 207 64 427 131 0 24 chr9 4731760 4731844 -113130783 + (GGAA)n Simple_repeat Simple_repeat 3 84 0 228 213 197 57 chr9 4731902 4732024 -113130603 - MIR SINE MIR -43 219 81 258 106 0 0 chr9 4732508 4732555 -113130072 + (TC)n Simple_repeat Simple_repeat 1 47 0 2014 165 46 6 chr9 4733167 4733518 -113129109 + MLT1A1 LTR MaLR 1 365 0 217 180 0 66 chr9 4733615 4733676 -113128951 + A-rich Low_complexity Low_complexity 3 59 0 2080 135 5 53 chr9 4733721 4734100 -113128527 + MER46B DNA MER2_type 1 236 0 450 0 0 0 chr9 4735646 4735696 -113126931 + (TG)n Simple_repeat Simple_repeat 2 51 0 765 146 7 42 chr9 4735697 4735841 -113126786 - FLAM_C SINE Alu 0 143 5 835 254 42 5 chr9 4735845 4736058 -113126569 + MIR SINE MIR 42 262 0 2358 69 13 10 chr9 4738505 4738809 -113123818 + AluY SINE Alu 2 306 -5 180 281 0 0 chr9 4738994 4739058 -113123569 - L2 LINE L2 -1064 2250 2187 286 258 118 55 chr9 4739238 4739509 -113123118 - L2 LINE L2 -1282 2032 1745 579 272 19 0 chr9 4739889 4740051 -113122576 + MIR SINE MIR 77 241 -21 937 197 95 61 chr9 4740072 4740336 -113122291 - L1MA10 LINE L1 0 6334 6062 565 250 41 6 chr9 4740465 4740637 -113121990 + MIR SINE MIR 63 240 -22 2435 90 0 0 chr9 4740682 4740983 -113121644 - AluSx SINE Alu -11 301 1 2222 108 0 0 chr9 4742792 4743078 -113119549 + AluSx SINE Alu 1 286 -26 311 333 83 6 chr9 4743746 4743926 -113118701 - MIR SINE MIR -7 255 62 1826 162 13 7 chr9 4744658 4744961 -113117666 - AluJb SINE Alu -7 305 1 1643 204 3 0 chr9 4745157 4745451 -113117176 + AluJb SINE Alu 6 300 -12 207 69 0 0 chr9 4746773 4746802 -113115825 + (TA)n Simple_repeat Simple_repeat 2 30 0 270 0 0 0 chr9 4749103 4749133 -113113494 + (TG)n Simple_repeat Simple_repeat 1 30 0 270 0 0 0 chr9 4749132 4749162 -113113465 + (GA)n Simple_repeat Simple_repeat 1 30 0 591 288 35 5 chr9 4749222 4749420 -113113207 - MIR SINE MIR -12 250 47 562 302 74 23 chr9 4751815 4752030 -113110597 + MIR SINE MIR 22 247 -15 575 66 0 0 chr9 4752041 4752117 -113110510 + L1PA8 LINE L1 6095 6170 -2 277 300 0 0 chr9 4752138 4752218 -113110409 + (CTG)n Simple_repeat Simple_repeat 1 80 0 258 215 0 0 chr9 4752219 4752298 -113110329 + (CTA)n Simple_repeat Simple_repeat 2 80 0 459 0 0 0 chr9 4752363 4752414 -113110213 + (CA)n Simple_repeat Simple_repeat 2 52 0 2017 148 0 0 chr9 4752420 4752717 -113109910 - AluJb SINE Alu -15 297 1 1806 174 0 32 chr9 4752761 4753077 -113109550 - AluJb SINE Alu -6 306 1 436 171 98 0 chr9 4754179 4754261 -113108366 + MER3 DNA MER1_type 2 91 -118 230 143 57 0 chr9 4754246 4754281 -113108346 - Charlie5 DNA MER1_type -2573 39 3 * 417 301 56 4 chr9 4754353 4754602 -113108025 + L2 LINE L2 1939 2200 -1114 * 567 255 87 10 chr9 4754600 4754796 -113107831 - MIR SINE MIR -9 253 43 338 304 181 24 chr9 4754860 4755241 -113107386 + L2 LINE L2 2273 2713 -601 2312 99 3 0 chr9 4755242 4755536 -113107091 + AluSx SINE Alu 2 296 -16 225 338 39 26 chr9 4755723 4755877 -113106750 + L2 LINE L2 2939 3094 -178 187 296 43 62 chr9 4757290 4757452 -113105175 + L2 LINE L2 2933 3091 -181 264 256 51 34 chr9 4759594 4759711 -113102916 - MIR SINE MIR -50 212 94 1909 166 0 7 chr9 4760167 4760469 -113102158 + AluJb SINE Alu 1 300 -12 2189 108 0 3 chr9 4761308 4761622 -113101005 - AluSx SINE Alu 0 313 1 2852 66 56 13 chr9 4761641 4762037 -113100590 - L1PA12 LINE L1 -15 6153 5741 1035 126 16 60 chr9 4762078 4762260 -113100367 - FRAM SINE Alu -8 168 1 2348 95 3 0 chr9 4762345 4762639 -113099988 + AluSx SINE Alu 1 295 -17 345 258 31 21 chr9 4763099 4763196 -113099431 + L2 LINE L2 3166 3263 -9 1002 254 29 41 chr9 4763491 4763833 -113098794 + MER46C DNA MER2_type 1 338 0 3364 176 15 45 chr9 4763946 4764303 -113098324 + MER82 DNA MER2_type 3 369 -284 1623 157 95 4 chr9 4764303 4764577 -113098050 - AluJo SINE Alu -13 299 1 1849 168 7 0 chr9 4764583 4764874 -113097753 - AluJo SINE Alu -15 297 5 3364 176 15 45 chr9 4764874 4765180 -113097447 + MER82 DNA MER2_type 374 653 0 22 35 0 0 chr9 4765704 4765733 -113096894 + AT_rich Low_complexity Low_complexity 1 29 0 866 132 0 22 chr9 4766309 4766445 -113096182 - FLAM_C SINE Alu -5 138 6 1941 132 170 16 chr9 4767304 4767675 -113094952 + MSTA LTR MaLR 1 428 0 508 256 34 0 chr9 4768391 4768508 -113094119 - MER45A DNA AcHobo 0 178 58 231 146 0 0 chr9 4768888 4768929 -113093698 + (TG)n Simple_repeat Simple_repeat 2 42 0 299 354 35 0 chr9 4769071 4769184 -113093443 - L3 LINE CR1 -224 1353 1237 * 435 287 172 4 chr9 4769155 4769399 -113093228 + L3 LINE CR1 1248 1532 -45 1812 33 0 0 chr9 4769884 4770096 -113092531 - L1PA2 LINE L1 0 6155 5944 2517 21 3 0 chr9 4770096 4770384 -113092243 + L1PA2 LINE L1 5652 5940 -215 2443 91 0 10 chr9 4770642 4770950 -113091677 + AluSx SINE Alu 1 305 -7 745 125 8 33 chr9 4770958 4771078 -113091549 + FLAM_C SINE Alu 1 117 -16 23 33 0 0 chr9 4771078 4771108 -113091519 + AT_rich Low_complexity Low_complexity 1 30 0 1400 148 14 9 chr9 4771190 4771406 -113091221 - AluSx SINE Alu -95 217 1 2123 124 3 0 chr9 4771997 4772301 -113090326 - AluSx SINE Alu 0 305 1 21 71 0 0 chr9 4772394 4772436 -113090191 + AT_rich Low_complexity Low_complexity 1 42 0 322 313 37 12 chr9 4772570 4772733 -113089894 - L1ME4a LINE L1 -219 5902 5736 246 254 0 0 chr9 4774921 4774980 -113087647 + (TAA)n Simple_repeat Simple_repeat 2 60 0 624 242 55 28 chr9 4775012 4775194 -113087433 - MIR SINE MIR -74 188 2 1035 184 9 55 chr9 4775225 4775377 -113087250 + MER3 DNA MER1_type 2 143 -66 909 119 0 15 chr9 4775377 4775511 -113087116 - FLAM_C SINE Alu -1 132 1 1035 184 9 55 chr9 4775511 4775575 -113087052 + MER3 DNA MER1_type 143 208 -1 369 189 131 143 chr9 4776119 4776294 -113086333 - MER106B DNA MER1_type -57 1002 7 636 206 58 5 chr9 4776608 4776695 -113085932 + MER5C DNA MER1_type 76 157 -167 1617 131 21 100 chr9 4776695 4777024 -113085603 + AluYb8 SINE Alu 1 303 -15 636 206 58 5 chr9 4777024 4777125 -113085502 + MER5C DNA MER1_type 157 274 -50 250 302 63 45 chr9 4777864 4778086 -113084541 + MIR SINE MIR 24 249 -13 564 278 125 33 chr9 4778167 4778732 -113083895 + L2 LINE L2 2646 3270 -2 389 221 14 83 chr9 4778824 4778969 -113083658 + MIR SINE MIR 57 191 -71 2323 102 7 3 chr9 4779350 4779653 -113082974 + AluSx SINE Alu 3 312 0 554 175 143 0 chr9 4780227 4780353 -113082274 - MIR SINE MIR -106 156 13 203 138 0 0 chr9 4780807 4780836 -113081791 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 10550 131 124 1 chr9 4782115 4783868 -113078759 - L1M1 LINE L1 -4317 3248 1280 1340 108 8 121 chr9 4783870 4784119 -113078508 + AluSg/x SINE Alu 82 302 -8 1292 131 5 15 chr9 4784225 4784423 -113078204 + AluSg/x SINE Alu 110 305 -5 2302 105 0 0 chr9 4785380 4785674 -113076953 + AluSx SINE Alu 1 294 -18 515 97 84 0 chr9 4785675 4785829 -113076798 + (TA)n Simple_repeat Simple_repeat 1 167 0 205 182 0 0 chr9 4785883 4785916 -113076711 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 25 31 0 0 chr9 4786034 4786066 -113076561 + AT_rich Low_complexity Low_complexity 1 32 0 202 319 121 45 chr9 4787225 4787382 -113075245 - L2 LINE L2 -8 3264 3096 * 689 169 245 0 chr9 4787378 4787562 -113075065 + MIR SINE MIR 8 236 -26 387 155 0 14 chr9 4787583 4787654 -113074973 + MLT1C LTR MaLR 398 467 0 1551 185 10 20 chr9 4787820 4788112 -113074515 - AluJo SINE Alu -23 289 1 201 59 88 0 chr9 4788171 4788205 -113074422 + A-rich Low_complexity Low_complexity 2 38 0 816 181 0 0 chr9 4788205 4788338 -113074289 + FLAM_C SINE Alu 1 133 0 345 361 67 13 chr9 4788546 4788845 -113073782 + L2 LINE L2 2077 2391 -923 702 278 112 46 chr9 4789078 4789427 -113073200 + L2 LINE L2 2942 3313 0 47 0 0 0 chr9 4790048 4790095 -113072532 + AT_rich Low_complexity Low_complexity 1 47 0 324 293 138 22 chr9 4790341 4790566 -113072061 - MIR SINE MIR -6 256 6 537 219 62 23 chr9 4790974 4791102 -113071525 - FLAM_C SINE Alu -8 135 3 1986 131 17 10 chr9 4791911 4792208 -113070419 - AluJb SINE Alu -13 299 1 1046 151 12 0 chr9 4792220 4792386 -113070241 - AluSg/x SINE Alu -5 307 140 204 200 0 0 chr9 4794165 4794210 -113068417 + (CCG)n Simple_repeat Simple_repeat 2 46 0 2146 109 13 3 chr9 4795583 4795886 -113066741 + AluY SINE Alu 3 308 -3 2035 124 7 3 chr9 4795932 4796223 -113066404 + AluSx SINE Alu 3 294 -18 317 267 33 27 chr9 4796258 4796408 -113066219 + L1ME4a LINE L1 5719 5869 -252 708 174 16 0 chr9 4796494 4796615 -113066012 + FLAM_C SINE Alu 2 124 -19 1530 173 0 26 chr9 4796753 4797019 -113065608 + AluJo SINE Alu 38 296 -16 735 316 0 0 chr9 4797170 4797379 -113065248 + MIR SINE MIR 28 236 -26 957 64 0 0 chr9 4797516 4797626 -113065001 + AluSq SINE Alu 109 218 -95 1616 165 0 29 chr9 4797710 4797983 -113064644 + AluJo SINE Alu 1 265 -47 2858 123 186 6 chr9 4798016 4798543 -113064084 - LTR29 LTR ERV1 0 622 1 21 89 0 0 chr9 4798606 4798662 -113063965 + AT_rich Low_complexity Low_complexity 1 56 0 2168 99 3 20 chr9 4798686 4798988 -113063639 + AluSq SINE Alu 1 297 -16 1242 198 84 62 chr9 4799024 4799393 -113063234 - LTR8A LTR ERV1 0 727 351 2140 117 0 0 chr9 4799393 4799676 -113062951 + AluSq SINE Alu 1 283 -30 1136 145 40 122 chr9 4799695 4799991 -113062636 - LTR8A LTR ERV1 -337 390 119 2238 117 7 0 chr9 4799993 4800301 -113062326 + AluSx SINE Alu 3 312 0 1316 117 0 0 chr9 4800301 4800480 -113062147 + AluSg/x SINE Alu 132 310 -2 683 177 53 0 chr9 4800480 4800593 -113062034 - LTR8 LTR ERV1 -572 119 1 287 316 41 0 chr9 4800690 4800788 -113061839 - MIR SINE MIR -21 241 140 447 301 15 0 chr9 4800823 4800959 -113061668 - MIR SINE MIR -110 152 15 2295 105 0 10 chr9 4800966 4801270 -113061357 - AluSg SINE Alu -9 301 1 266 257 0 0 chr9 4802542 4802612 -113060015 + MIR SINE MIR 66 135 -127 464 284 123 89 chr9 4802654 4803105 -113059522 + L1ME4a LINE L1 5372 5828 -293 252 0 0 0 chr9 4803164 4803192 -113059435 + (CA)n Simple_repeat Simple_repeat 2 29 0 234 0 0 0 chr9 4803200 4803226 -113059401 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2037 113 18 0 chr9 4803230 4803505 -113059122 - AluSx SINE Alu -32 280 1 739 155 9 0 chr9 4803692 4803808 -113058819 + AluSg/x SINE Alu 185 301 -9 924 125 0 22 chr9 4804384 4804520 -113058107 + AluSq/x SINE Alu 7 139 -173 671 231 21 0 chr9 4804757 4804900 -113057727 + MER58B DNA MER1_type 181 326 -15 1520 199 11 11 chr9 4805019 4805300 -113057327 + AluJo SINE Alu 1 281 -31 380 250 75 19 chr9 4806918 4807078 -113055549 - L1MC5 LINE L1 -184 7777 7609 641 281 59 64 chr9 4807731 4808187 -113054440 - L1ME4a LINE L1 -178 5943 5490 346 114 0 0 chr9 4808517 4808561 -113054066 + MER72 LTR ERV1 585 628 -94 811 172 0 0 chr9 4808913 4809035 -113053592 + FLAM_C SINE Alu 1 122 -11 734 274 10 82 chr9 4809089 4809381 -113053246 - MER102a DNA MER1_type -18 312 42 1440 156 0 0 chr9 4809942 4810153 -113052474 + AluSg/x SINE Alu 82 292 -20 1025 266 135 17 chr9 4810253 4810719 -113051908 + LTR33 LTR ERVL 1 521 0 482 308 49 90 chr9 4810756 4811146 -113051481 + L2 LINE L2 2872 3245 -27 2149 112 0 13 chr9 4812742 4813045 -113049582 - AluY SINE Alu -12 299 1 1968 119 0 63 chr9 4813738 4813889 -113048738 + AluSx SINE Alu 1 123 -193 1983 113 7 7 chr9 4813889 4814171 -113048456 + AluSx SINE Alu 21 302 -10 1968 119 0 63 chr9 4814171 4814354 -113048273 + AluSx SINE Alu 123 316 0 2359 104 0 7 chr9 4814646 4814953 -113047674 + AluSx SINE Alu 1 305 -7 542 259 56 0 chr9 4816694 4816837 -113045790 + MER117 DNA MER1_type 12 162 -35 341 259 229 15 chr9 4817290 4817495 -113045132 + MIR SINE MIR 12 260 -2 2055 158 0 0 chr9 4817580 4817890 -113044737 - AluJb SINE Alu -2 310 1 442 136 0 23 chr9 4818277 4818365 -113044262 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 2704 45 0 0 chr9 4818660 4818971 -113043656 + AluYa5 SINE Alu 1 311 0 1823 145 9 60 chr9 4819556 4819874 -113042753 + AluSx SINE Alu 1 302 -10 2167 109 33 0 chr9 4819913 4820215 -113042412 + AluSx SINE Alu 1 312 0 424 181 106 0 chr9 4820307 4820401 -113042226 + MER20 DNA MER1_type 24 127 -92 68 55 0 0 chr9 4821624 4821734 -113040893 + AT_rich Low_complexity Low_complexity 1 110 0 1609 198 63 25 chr9 4822159 4822554 -113040073 + L1MC4 LINE L1 7357 7766 -276 1826 156 14 3 chr9 4823063 4823358 -113039269 - AluJb SINE Alu -14 298 1 21 0 0 0 chr9 4824477 4824498 -113038129 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr9 4825037 4825062 -113037565 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 200 275 0 0 chr9 4825068 4825108 -113037519 + polypyrimidine Low_complexity Low_complexity 4 43 0 3506 112 112 0 chr9 4825499 4826070 -113036557 + LTR24C LTR ERV1 1 635 0 1632 167 113 130 chr9 4826591 4827238 -113035389 - LTR1B LTR ERV1 -81 745 110 570 318 0 6 chr9 4827626 4827805 -113034822 + (CA)n Simple_repeat Simple_repeat 2 179 0 458 316 0 6 chr9 4827838 4828198 -113034429 + (CA)n Simple_repeat Simple_repeat 1 357 0 417 363 0 6 chr9 4828280 4828459 -113034168 + (CA)n Simple_repeat Simple_repeat 2 179 0 8533 48 1 2 chr9 4828843 4830539 -113032088 + L1PA3 LINE L1 4315 6007 -148 2115 115 0 3 chr9 4830836 4831124 -113031503 + AluSq SINE Alu 1 308 0 190 0 0 0 chr9 4831124 4831145 -113031482 + (TAA)n Simple_repeat Simple_repeat 2 180 0 404 250 24 40 chr9 4831261 4831385 -113031242 + L2 LINE L2 3151 3272 0 301 291 13 0 chr9 4831415 4831494 -113031133 - MIR3 SINE MIR -20 188 109 229 288 41 27 chr9 4831564 4831637 -113030990 - L2 LINE L2 -1 3312 3239 806 303 73 23 chr9 4831831 4832456 -113030171 - L2 LINE L2 -60 3253 2590 705 250 66 0 chr9 4832884 4833096 -113029531 - MER20B DNA MER1_type 0 783 558 1084 214 140 84 chr9 4833112 4833505 -113029122 - MER20B DNA MER1_type -366 417 3 216 336 136 18 chr9 4833559 4833669 -113028958 + L2 LINE L2 3145 3267 -5 21 0 0 0 chr9 4835440 4835461 -113027166 + AT_rich Low_complexity Low_complexity 1 21 0 2336 94 0 3 chr9 4836738 4837037 -113025590 - AluSx SINE Alu -14 298 1 1292 125 100 0 chr9 4837116 4837316 -113025311 + AluSg/x SINE Alu 86 305 -7 608 332 16 24 chr9 4837317 4837570 -113025057 - MIR SINE MIR -5 257 7 23 0 0 0 chr9 4838031 4838054 -113024573 + AT_rich Low_complexity Low_complexity 1 23 0 820 231 95 18 chr9 4838367 4838588 -113024039 + MIR SINE MIR 9 246 -16 180 349 35 35 chr9 4838939 4839025 -113023602 + MIR SINE MIR 45 130 -78 1772 240 41 7 chr9 4839055 4839468 -113023159 - L1ME1 LINE L1 -25 6141 5715 286 155 42 70 chr9 4839470 4839541 -113023086 + MIR SINE MIR 120 188 -74 402 115 0 0 chr9 4839552 4839613 -113023014 + (TA)n Simple_repeat Simple_repeat 2 62 0 606 258 145 14 chr9 4839831 4840052 -113022575 + MIR SINE MIR 13 262 0 24 0 0 0 chr9 4840611 4840635 -113021992 + AT_rich Low_complexity Low_complexity 1 24 0 1729 127 0 4 chr9 4840649 4840908 -113021719 + AluSx SINE Alu 34 291 -21 30 27 0 0 chr9 4840913 4840950 -113021677 + AT_rich Low_complexity Low_complexity 1 37 0 4123 100 32 12 chr9 4840954 4841555 -113021072 - L1MA3 LINE L1 -1 6304 5692 496 156 13 0 chr9 4842200 4842277 -113020350 - AluJ/FLAM SINE Alu -228 84 7 621 235 136 60 chr9 4842286 4842639 -113019988 - L1ME4a LINE L1 0 6121 5742 1282 223 143 61 chr9 4842644 4843367 -113019260 - LTR50 LTR ERVL 0 795 14 257 150 0 0 chr9 4843439 4843479 -113019148 - L1ME4a LINE L1 -459 5662 5623 2397 85 0 0 chr9 4844614 4844909 -113017718 - AluSx SINE Alu -9 303 9 425 222 163 0 chr9 4844945 4845080 -113017547 + L1ME4a LINE L1 5964 6120 -1 1656 196 3 7 chr9 4845508 4845809 -113016818 + AluJb SINE Alu 1 300 -12 22 0 0 0 chr9 4845809 4845831 -113016796 + AT_rich Low_complexity Low_complexity 1 22 0 884 231 100 9 chr9 4846109 4846338 -113016289 - MIR SINE MIR -12 250 1 1581 209 3 0 chr9 4846437 4846724 -113015903 - AluJo SINE Alu -20 292 5 2239 117 3 0 chr9 4846939 4847237 -113015390 + AluSg SINE Alu 1 299 -11 838 182 69 19 chr9 4847543 4847702 -113014925 - AluJo SINE Alu -24 288 122 1460 194 3 26 chr9 4847841 4848145 -113014482 - AluJo SINE Alu -15 297 1 2103 99 18 7 chr9 4848152 4848434 -113014193 - AluSx SINE Alu -27 285 1 762 179 0 30 chr9 4848716 4848850 -113013777 + FLAM_C SINE Alu 2 131 -2 22 0 0 0 chr9 4850059 4850081 -113012546 + AT_rich Low_complexity Low_complexity 1 22 0 339 293 75 45 chr9 4850495 4850628 -113011999 - L2 LINE L2 0 3272 3136 367 231 95 27 chr9 4850629 4850776 -113011851 + L1ME4a LINE L1 5713 5869 -252 514 269 99 13 chr9 4850848 4851034 -113011593 + L1ME4a LINE L1 5443 5657 -505 679 213 28 0 chr9 4851037 4851178 -113011449 + Charlie1 DNA MER1_type 5 149 -2612 * 1365 141 71 24 chr9 4851173 4851470 -113011157 + Charlie1 DNA MER1_type 2420 2730 -31 1137 154 135 5 chr9 4851576 4851784 -113010843 + MER46A DNA MER2_type 2 236 0 292 258 54 21 chr9 4852207 4852300 -113010327 + L1ME4a LINE L1 5956 6051 -70 33 25 0 0 chr9 4852323 4852363 -113010264 + AT_rich Low_complexity Low_complexity 1 40 0 1899 159 28 0 chr9 4852512 4852801 -113009826 - AluJo SINE Alu -15 297 1 622 244 73 6 chr9 4853019 4853183 -113009444 - MIR SINE MIR -3 259 85 410 206 20 0 chr9 4853469 4853571 -113009056 + CT-rich Low_complexity Low_complexity 1 104 0 2118 144 0 3 chr9 4853593 4853905 -113008722 - AluJo SINE Alu -1 311 1 1648 179 16 52 chr9 4854356 4854645 -113007982 - MER4D LTR ERV1 0 903 628 1890 174 26 0 chr9 4854645 4854949 -113007678 + AluJo SINE Alu 1 312 0 1648 179 16 52 chr9 4854949 4855022 -113007605 - MER4D LTR ERV1 -275 628 554 1781 147 35 7 chr9 4855042 4855328 -113007299 - MER49 LTR ERV1 -629 294 1 421 324 7 7 chr9 4855414 4855556 -113007071 + MIR SINE MIR 61 202 -60 1942 181 86 49 chr9 4855556 4856042 -113006585 - LTR54 LTR ERV1 0 510 7 263 333 79 8 chr9 4856316 4856442 -113006185 + MIR SINE MIR 48 182 -80 1305 189 58 0 chr9 4856943 4857225 -113005402 - AluJo SINE Alu 0 306 10 1179 233 78 33 chr9 4857226 4857666 -113004961 + LTR56 LTR ERV1 8 610 0 227 77 0 26 chr9 4857684 4857723 -113004904 + (GAAAA)n Simple_repeat Simple_repeat 4 41 0 2298 69 24 3 chr9 4857745 4858035 -113004592 + AluSq SINE Alu 1 296 -17 1774 104 150 0 chr9 4858416 4858676 -113003951 - AluSx SINE Alu -2 300 2 182 196 62 93 chr9 4858702 4858799 -113003828 - MIR SINE MIR -70 192 99 1520 95 60 0 chr9 4859245 4859477 -113003150 - L1MA8 LINE L1 -4 6287 6042 1100 124 12 6 chr9 4859524 4859693 -113002934 - AluSg/x SINE Alu -16 296 127 192 324 0 15 chr9 4859795 4859863 -113002764 + L2 LINE L2 2673 2739 -575 2325 102 0 6 chr9 4859920 4860234 -113002393 - AluSx SINE Alu 0 312 1 343 351 38 15 chr9 4860564 4860695 -113001932 + MER5A DNA MER1_type 8 141 -48 185 246 222 56 chr9 4860597 4860704 -113001923 - MER5B DNA MER1_type -29 149 17 * 1567 176 0 25 chr9 4860704 4860983 -113001644 + AluJb SINE Alu 1 272 -40 185 246 222 56 chr9 4860983 4861001 -113001626 - MER5B DNA MER1_type -161 17 3 2052 108 0 0 chr9 4861137 4861416 -113001211 + AluY SINE Alu 1 279 -32 321 130 0 87 chr9 4862760 4862829 -112999798 + L1MC4 LINE L1 6471 6533 -1509 1220 172 102 19 chr9 4862829 4863085 -112999542 + AluJo SINE Alu 17 293 -19 507 261 41 60 chr9 4863086 4863304 -112999323 + L1MC4 LINE L1 6534 6747 -1295 24 0 0 0 chr9 4863316 4863340 -112999287 + AT_rich Low_complexity Low_complexity 1 24 0 1745 114 0 0 chr9 4863352 4863579 -112999048 + AluSg SINE Alu 1 227 -83 1292 198 68 0 chr9 4864691 4864928 -112997699 - AluJb SINE Alu -59 253 1 2223 150 0 0 chr9 4864928 4865289 -112997338 - L1 LINE L1 -1142 5004 4644 6234 95 16 15 chr9 4865294 4866160 -112996467 - L1MA2 LINE L1 0 6304 5438 16185 147 30 86 chr9 4866160 4866657 -112995970 - L1 LINE L1 -902 6663 6140 1311 140 0 0 chr9 4866657 4866843 -112995784 - AluSg/x SINE Alu -2 310 125 16185 147 30 86 chr9 4866843 4867451 -112995176 - L1 LINE L1 -1425 6140 5500 1639 151 45 34 chr9 4867451 4867742 -112994885 - AluJb SINE Alu -8 304 11 16185 147 30 86 chr9 4867742 4867898 -112994729 - L1 LINE L1 -2065 5500 5337 1696 158 92 0 chr9 4867898 4868170 -112994457 + AluSx SINE Alu 1 297 -15 16185 147 30 86 chr9 4868170 4869772 -112992855 - L1 LINE L1 -2228 5337 3648 2777 90 0 37 chr9 4869772 4869844 -112992783 - THE1B LTR MaLR 0 364 291 2218 119 0 0 chr9 4869844 4870147 -112992480 + AluSg SINE Alu 1 303 -7 2777 90 0 37 chr9 4870147 4870452 -112992175 - THE1B LTR MaLR -73 291 1 16185 147 30 86 chr9 4870452 4870834 -112991793 - L1 LINE L1 -3917 3648 3246 2927 73 0 8 chr9 4870834 4871203 -112991424 - L1PA8 LINE L1 0 6172 5807 16185 147 30 86 chr9 4871203 4872498 -112990129 - L1 LINE L1 -4319 3246 1881 2262 114 0 3 chr9 4872498 4872805 -112989822 + AluSx SINE Alu 1 306 -6 16185 147 30 86 chr9 4872805 4873183 -112989444 - L1 LINE L1 -5684 1881 1484 2326 101 14 0 chr9 4873183 4873479 -112989148 + AluSx SINE Alu 1 300 -12 16185 147 30 86 chr9 4873479 4874331 -112988296 - L1 LINE L1 -6081 1484 1081 315 203 0 0 chr9 4875098 4875167 -112987460 + A-rich Low_complexity Low_complexity 1 69 0 5690 178 47 6 chr9 4875183 4876213 -112986414 - L1 LINE L1 -6489 1076 5 1815 131 3 91 chr9 4876230 4876559 -112986068 + AluSx SINE Alu 1 300 -12 2562 184 89 7 chr9 4876559 4877134 -112985493 + L1MB7 LINE L1 5487 6108 -76 1899 162 0 20 chr9 4877246 4877549 -112985078 - AluSq SINE Alu -16 297 1 1322 143 0 46 chr9 4877904 4878121 -112984506 - AluJb SINE Alu -105 207 1 370 109 0 0 chr9 4878127 4878182 -112984445 - MLT2B1 LTR ERVL -465 55 1 313 347 0 0 chr9 4878186 4878284 -112984343 - L1MC/D LINE L1 -2246 5562 5465 2203 118 0 13 chr9 4878380 4878694 -112983933 - AluSg SINE Alu 0 310 1 24 0 0 0 chr9 4878706 4878730 -112983897 + AT_rich Low_complexity Low_complexity 1 24 0 507 261 41 60 chr9 4878742 4878960 -112983667 - L1MC4 LINE L1 -1295 6747 6534 1203 176 102 19 chr9 4878961 4879217 -112983410 - AluJo SINE Alu -19 293 17 321 130 0 87 chr9 4879217 4879286 -112983341 - L1MC4 LINE L1 -1509 6533 6471 2052 108 0 0 chr9 4880630 4880909 -112981718 - AluY SINE Alu -32 279 1 185 246 222 56 chr9 4881045 4881063 -112981564 + MER5B DNA MER1_type 3 17 -161 1539 179 0 25 chr9 4881063 4881342 -112981285 - AluJb SINE Alu -40 272 1 185 246 222 56 chr9 4881342 4881449 -112981178 + MER5B DNA MER1_type 17 149 -29 * 363 344 38 15 chr9 4881351 4881482 -112981145 - MER5A DNA MER1_type -48 141 8 2327 103 0 6 chr9 4881812 4882124 -112980503 + AluSx SINE Alu 1 310 -2 192 324 0 15 chr9 4882181 4882249 -112980378 - L2 LINE L2 -575 2739 2673 1130 120 13 0 chr9 4882362 4882520 -112980107 + AluSg/x SINE Alu 137 296 -16 1459 95 60 0 chr9 4882567 4882799 -112979828 + L1MA8 LINE L1 6042 6287 -4 1674 107 149 0 chr9 4883368 4883630 -112978997 + AluSx SINE Alu 2 302 0 2078 128 21 0 chr9 4884008 4884298 -112978329 - AluSq SINE Alu -16 297 2 2003 131 3 20 chr9 4884718 4885023 -112977604 - AluJo SINE Alu -12 300 1 1994 112 20 7 chr9 4885346 4885641 -112976986 - AluSx SINE Alu -13 299 1 756 239 68 27 chr9 4885690 4885953 -112976674 - MLT2D LTR ERVL -140 274 1 201 179 26 0 chr9 4886072 4886111 -112976516 + CT-rich Low_complexity Low_complexity 2 41 0 339 248 19 38 chr9 4887095 4887200 -112975427 - MLT1K LTR MaLR -27 561 459 1840 173 127 0 chr9 4887544 4887867 -112974760 - MER47A DNA MER2_type 0 366 3 502 223 234 5 chr9 4888221 4888418 -112974209 + MIR SINE MIR 21 262 0 1615 177 23 23 chr9 4888480 4888779 -112973848 - AluJo SINE Alu -13 299 1 438 296 46 15 chr9 4888880 4889076 -112973551 + MIR SINE MIR 61 262 0 849 232 170 26 chr9 4889230 4889632 -112972995 - MLT1K LTR MaLR -37 551 20 1757 173 7 19 chr9 4889731 4890038 -112972589 + AluJb SINE Alu 1 303 -9 2269 110 7 0 chr9 4890186 4890494 -112972133 - AluSx SINE Alu -2 310 1 372 294 0 0 chr9 4891191 4891609 -112971018 + (TG)n Simple_repeat Simple_repeat 1 418 0 455 295 1 0 chr9 4891641 4892557 -112970070 + (TG)n Simple_repeat Simple_repeat 1 917 0 509 311 0 7 chr9 4892576 4892724 -112969903 + (TG)n Simple_repeat Simple_repeat 1 147 0 25 51 0 0 chr9 4893077 4893116 -112969511 + AT_rich Low_complexity Low_complexity 1 39 0 1925 119 0 80 chr9 4893192 4893529 -112969098 - AluJb SINE Alu -2 310 1 2342 107 0 0 chr9 4893645 4893953 -112968674 - AluSq SINE Alu -5 308 1 21 0 0 0 chr9 4894106 4894127 -112968500 + AT_rich Low_complexity Low_complexity 1 21 0 2113 111 30 3 chr9 4894333 4894631 -112967996 + AluSc SINE Alu 1 306 -3 23 0 0 0 chr9 4894673 4894696 -112967931 + AT_rich Low_complexity Low_complexity 1 23 0 978 163 0 18 chr9 4894889 4895055 -112967572 - MER1B DNA MER1_type -55 284 122 252 163 23 0 chr9 4895055 4895098 -112967529 + MER1B DNA MER1_type 286 329 0 497 116 16 132 chr9 4895231 4895273 -112967354 + L1PB4 LINE L1 6043 6088 -68 2349 49 0 0 chr9 4895273 4895560 -112967067 + AluSc SINE Alu 15 301 0 497 116 16 132 chr9 4895560 4895645 -112966982 + L1PB4 LINE L1 6088 6156 0 317 330 84 6 chr9 4896594 4896773 -112965854 + MER112 DNA MER1_type 50 242 -18 659 244 8 0 chr9 4896874 4897005 -112965622 + FLAM_C SINE Alu 1 132 -1 291 330 9 9 chr9 4897005 4897111 -112965516 + MIR SINE MIR 22 127 -135 992 213 29 24 chr9 4897168 4897375 -112965252 - MSTD LTR MaLR -2 394 187 615 237 0 8 chr9 4897377 4897508 -112965119 - FLAM_A SINE Alu -9 133 4 822 246 26 26 chr9 4897510 4897705 -112964922 - MSTD LTR MaLR -201 195 1 228 283 0 0 chr9 4898203 4898249 -112964378 + polypyrimidine Low_complexity Low_complexity 4 49 0 1776 152 24 20 chr9 4898270 4898566 -112964061 + AluJo SINE Alu 3 299 -13 30 0 0 0 chr9 4898567 4898597 -112964030 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr9 4899014 4899036 -112963591 + (T)n Simple_repeat Simple_repeat 1 22 0 471 261 11 50 chr9 4900121 4900301 -112962326 - L1MC4a LINE L1 -1926 5882 5710 1324 183 117 11 chr9 4900642 4900915 -112961712 - AluSx SINE Alu -10 302 1 381 175 0 0 chr9 4901489 4901546 -112961081 + AluJ/FLAM SINE Alu 2 58 -244 628 135 162 18 chr9 4901564 4901675 -112960952 + FLAM_C SINE Alu 2 128 -5 1270 167 58 109 chr9 4901680 4901991 -112960636 + AluJb SINE Alu 1 295 -17 357 82 0 0 chr9 4903464 4903513 -112959114 + (TG)n Simple_repeat Simple_repeat 1 49 0 2366 46 70 0 chr9 4903637 4903922 -112958705 + AluY SINE Alu 1 305 -6 21 0 0 0 chr9 4904488 4904509 -112958118 + AT_rich Low_complexity Low_complexity 1 21 0 194 125 0 25 chr9 4905429 4905469 -112957158 + (TGG)n Simple_repeat Simple_repeat 3 41 0 524 289 13 0 chr9 4905554 4905706 -112956921 + MER102a DNA MER1_type 177 330 0 397 242 47 8 chr9 4906713 4906841 -112955786 - MIR3 SINE MIR -14 194 62 1257 159 34 0 chr9 4907210 4907418 -112955209 - AluJo SINE Alu -12 300 86 316 294 59 64 chr9 4907564 4907751 -112954876 - MIR3 SINE MIR -11 197 12 2482 76 7 0 chr9 4908262 4908564 -112954063 + AluSc SINE Alu 1 304 -5 217 345 115 0 chr9 4908603 4908742 -112953885 - MIR SINE MIR -47 215 61 272 319 0 0 chr9 4909147 4909241 -112953386 - MIR SINE MIR 0 262 169 25 0 0 0 chr9 4910205 4910230 -112952397 + AT_rich Low_complexity Low_complexity 1 25 0 504 284 95 9 chr9 4910487 4910698 -112951929 - MIR SINE MIR -16 246 18 182 288 0 15 chr9 4911402 4911468 -112951159 + MIR SINE MIR 15 79 -183 253 242 129 40 chr9 4912977 4913101 -112949526 - L1MC/D LINE L1 -1985 5823 5689 241 307 0 13 chr9 4914555 4914630 -112947997 + Charlie4 DNA MER1_type 1888 1961 0 612 294 63 25 chr9 4914668 4914906 -112947721 - MIR SINE MIR -3 259 13 22 35 0 0 chr9 4916835 4916864 -112945763 + AT_rich Low_complexity Low_complexity 1 29 0 28 29 0 0 chr9 4917619 4917654 -112944973 + AT_rich Low_complexity Low_complexity 1 35 0 301 270 60 60 chr9 4917788 4918003 -112944624 - L1MC4 LINE L1 -19 8023 7809 240 319 118 0 chr9 4918359 4918478 -112944149 + MIR SINE MIR 124 256 -6 443 274 127 6 chr9 4920737 4920894 -112941733 - MER102b DNA MER1_type -45 296 121 2077 111 31 0 chr9 4922670 4922959 -112939668 - AluSx SINE Alu -13 299 2 231 36 0 0 chr9 4926264 4926292 -112936335 + (T)n Simple_repeat Simple_repeat 1 28 0 2380 75 0 3 chr9 4927667 4927962 -112934665 - AluY SINE Alu -17 294 1 206 333 81 9 chr9 4928268 4928379 -112934248 + MIR SINE MIR 21 139 -123 321 157 0 0 chr9 4928566 4928617 -112934010 - MER66B LTR ERV1 -141 345 295 25 75 0 0 chr9 4928726 4928779 -112933848 + AT_rich Low_complexity Low_complexity 1 53 0 671 258 56 56 chr9 4928872 4929105 -112933522 - MIR SINE MIR -22 240 8 2504 57 7 0 chr9 4929106 4929402 -112933225 - AluY SINE Alu -13 298 1 2497 75 7 0 chr9 4930556 4930863 -112931764 + AluSg SINE Alu 1 309 -1 4362 164 23 26 chr9 4932858 4933703 -112928924 - L1MB8 LINE L1 -1 6177 5336 418 137 27 0 chr9 4933713 4933786 -112928841 - AluJo SINE Alu -11 301 227 * 804 205 47 23 chr9 4933783 4933954 -112928673 - AluJo SINE Alu -134 178 4 2229 187 52 23 chr9 4933960 4934484 -112928143 - L1MB8 LINE L1 -820 5326 4788 325 138 35 0 chr9 4934484 4934542 -112928085 + MER5B DNA MER1_type 116 175 -3 442 269 32 106 chr9 4935040 4935322 -112927305 + L2 LINE L2 3046 3306 -7 675 164 9 0 chr9 4935483 4935593 -112927034 + FLAM_A SINE Alu 19 129 -13 28 61 0 0 chr9 4935848 4935897 -112926730 + AT_rich Low_complexity Low_complexity 1 49 0 1203 246 163 12 chr9 4936872 4937271 -112925356 - LTR40c LTR ERVL -1 464 6 1763 201 105 62 chr9 4937554 4938140 -112924487 - MLT1E2 LTR MaLR 0 624 1 962 164 53 0 chr9 4939091 4939243 -112923384 - FRAM SINE Alu -21 155 1 1102 113 6 0 chr9 4939300 4939459 -112923168 - L1PA10 LINE L1 -1 6167 6008 549 201 86 65 chr9 4941373 4941512 -112921115 - FLAM_C SINE Alu -1 142 1 252 272 160 0 chr9 4941910 4942035 -112920592 + MIR SINE MIR 3 147 -115 235 259 151 0 chr9 4942619 4942758 -112919869 + MIR SINE MIR 89 256 -6 385 250 136 15 chr9 4942874 4943006 -112919621 - MLT1K LTR MaLR -20 568 421 277 100 0 0 chr9 4943006 4943046 -112919581 + FRAM/FAM SINE Alu 43 82 -93 188 229 29 57 chr9 4943176 4943246 -112919381 + MIR SINE MIR 78 145 -63 22 35 0 0 chr9 4943304 4943333 -112919294 + AT_rich Low_complexity Low_complexity 1 29 0 603 316 30 6 chr9 4943377 4943545 -112919082 - MLT1K LTR MaLR -415 173 2 243 88 0 0 chr9 4943954 4943988 -112918639 + (T)n Simple_repeat Simple_repeat 1 34 0 2002 100 0 8 chr9 4944120 4944379 -112918248 - AluSq SINE Alu -48 265 9 2110 107 17 3 chr9 4944586 4944875 -112917752 - AluSg SINE Alu -17 293 1 221 245 0 0 chr9 4944893 4944942 -112917685 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 2089 127 10 7 chr9 4945009 4945300 -112917327 + AluSq SINE Alu 1 292 -21 299 253 137 11 chr9 4945644 4945739 -112916888 - MER103 DNA DNA -59 107 1 1864 152 13 23 chr9 4945875 4946184 -112916443 - AluJo SINE Alu -6 306 1 1820 176 0 0 chr9 4947387 4947682 -112914945 - AluJo SINE Alu -17 295 1 730 20 41 0 chr9 4947702 4947800 -112914827 + (CTATT)n Simple_repeat Simple_repeat 3 104 0 764 292 65 27 chr9 4948615 4949133 -112913494 - MLT1K LTR MaLR -8 580 13 217 248 186 18 chr9 4949305 4949418 -112913209 - MIR3 SINE MIR -49 159 28 1885 211 25 3 chr9 4949583 4949939 -112912688 + MLT1A1 LTR MaLR 1 364 -1 1034 210 0 40 chr9 4950363 4950587 -112912040 - AluJo SINE Alu -13 299 85 271 62 0 0 chr9 4950587 4950619 -112912008 - AluSg/x SINE Alu -52 250 219 979 112 0 42 chr9 4950619 4950762 -112911865 - AluJo SINE Alu -170 142 6 329 274 133 0 chr9 4951002 4951137 -112911490 + MARNA DNA Mariner 235 387 -199 2209 129 3 0 chr9 4951215 4951526 -112911101 + AluSx SINE Alu 1 312 0 246 132 0 0 chr9 4951541 4951594 -112911033 + (TAAAA)n Simple_repeat Simple_repeat 4 56 0 26 0 0 0 chr9 4953489 4953515 -112909112 + AT_rich Low_complexity Low_complexity 1 26 0 1728 199 3 0 chr9 4953596 4953883 -112908744 - AluJb SINE Alu -24 288 1 495 274 169 10 chr9 4954145 4954346 -112908281 + L1ME LINE L1 5582 5814 -307 196 289 111 11 chr9 4954490 4954580 -112908047 + L2 LINE L2 3141 3239 -33 2106 184 37 31 chr9 4956258 4956714 -112905913 - MLT1C LTR MaLR -6 461 3 234 250 0 0 chr9 4956911 4956959 -112905668 - MLT1K LTR MaLR -17 571 524 2261 109 0 22 chr9 4956977 4957297 -112905330 + AluSq SINE Alu 1 313 0 248 152 0 22 chr9 4957332 4957378 -112905249 - HSMAR1 DNA Mariner -1242 45 1 265 107 18 36 chr9 4957461 4957517 -112905110 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 859 257 61 39 chr9 4957544 4957824 -112904803 - MLT1K LTR MaLR -165 423 138 254 292 43 75 chr9 4958380 4958541 -112904086 - MIR3 SINE MIR -36 172 17 291 140 0 0 chr9 4958618 4958668 -112903959 + (CA)n Simple_repeat Simple_repeat 2 51 0 288 309 78 123 chr9 4958692 4959051 -112903576 + L2 LINE L2 2917 3259 -13 289 243 97 29 chr9 4959246 4959349 -112903278 - MIR SINE MIR -1 261 152 1753 160 21 63 chr9 4959859 4960240 -112902387 - MLT1A1 LTR MaLR 0 365 1 409 260 57 24 chr9 4960605 4960728 -112901899 - L2 LINE L2 -5 3308 3182 2256 105 0 0 chr9 4960750 4961044 -112901583 - AluSq SINE Alu -14 299 6 270 250 18 71 chr9 4961266 4961378 -112901249 - LTR67 LTR ERVL -367 190 32 1951 121 34 14 chr9 4961416 4961713 -112900914 + AluJb SINE Alu 1 303 -9 1175 213 63 72 chr9 4961776 4962124 -112900503 - L1ME2 LINE L1 -1 6163 5819 1175 127 0 0 chr9 4962124 4962289 -112900338 + AluSg/x SINE Alu 134 298 -14 478 207 78 17 chr9 4962289 4962405 -112900222 - L1ME2 LINE L1 -344 5822 5700 220 221 103 29 chr9 4962407 4962475 -112900152 - MER5A DNA MER1_type -116 73 1 5116 63 38 0 chr9 4962710 4963345 -112899282 + PABL_A LTR ERV1 1 659 -1 414 280 95 11 chr9 4963422 4963640 -112898987 - MLT1H LTR MaLR -215 334 62 272 279 52 10 chr9 4964362 4964528 -112898099 + LTR16C LTR ERVL 2 222 -269 2148 121 0 7 chr9 4965000 4965297 -112897330 + AluSx SINE Alu 1 295 -17 265 204 174 51 chr9 4966264 4966362 -112896265 - MIR SINE MIR -78 130 21 1377 170 88 28 chr9 4966542 4966825 -112895802 + AluJb SINE Alu 1 300 -12 490 243 18 0 chr9 4966854 4966965 -112895662 - MER103 DNA DNA -46 120 8 251 111 0 22 chr9 4966973 4967018 -112895609 + (TCCC)n Simple_repeat Simple_repeat 2 45 0 748 211 34 96 chr9 4967430 4967838 -112894789 + L1ME LINE L1 552 934 -5136 842 206 0 0 chr9 4967843 4967989 -112894638 + FRAM SINE Alu 1 146 -30 257 0 30 0 chr9 4967994 4968027 -112894600 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 1156 257 63 41 chr9 4968029 4968877 -112893750 + L1MB2 LINE L1 1016 5881 -224 * 1682 192 13 37 chr9 4968715 4969096 -112893531 + L1ME2 LINE L1 5717 6088 -10 308 265 65 37 chr9 4969129 4969344 -112893283 + L1MC4 LINE L1 7821 8041 -1 587 317 96 30 chr9 4969352 4970020 -112892607 + L2 LINE L2 2334 3046 -226 279 221 44 15 chr9 4970074 4970142 -112892485 + L2 LINE L2 3231 3300 -13 747 238 165 79 chr9 4970248 4970780 -112891847 - MLT1L LTR MaLR -8 580 4 22 0 0 0 chr9 4971012 4971034 -112891593 + AT_rich Low_complexity Low_complexity 1 22 0 295 264 0 11 chr9 4971077 4971164 -112891463 + L1MDb LINE L1 892 977 -5432 33150 100 12 59 chr9 4971866 4978320 -112884307 - L1PA7 LINE L1 -1 6153 12 27 87 0 0 chr9 4978330 4978399 -112884228 + AT_rich Low_complexity Low_complexity 1 69 0 2120 113 0 10 chr9 4978727 4979019 -112883608 - AluSx SINE Alu -6 306 18 269 323 91 5 chr9 4979141 4979327 -112883300 + L1M4 LINE L1 4935 5136 -1010 699 290 45 0 chr9 4979331 4979552 -112883075 - MIR SINE MIR 0 262 32 1992 158 0 0 chr9 4979838 4980136 -112882491 - AluJo SINE Alu -14 298 1 22 35 0 0 chr9 4981820 4981849 -112880778 + AT_rich Low_complexity Low_complexity 1 29 0 428 182 65 71 chr9 4981852 4982006 -112880621 - L1ME4a LINE L1 -4 6117 5965 1563 147 50 114 chr9 4982094 4982258 -112880369 + MLT1B LTR MaLR 1 174 -216 2170 130 0 0 chr9 4982258 4982559 -112880068 + AluSx SINE Alu 12 312 0 1563 147 50 114 chr9 4982559 4982796 -112879831 + MLT1B LTR MaLR 174 376 -14 999 289 46 28 chr9 4982902 4983364 -112879263 - L1ME4a LINE L1 -188 5933 5468 2255 78 10 10 chr9 4984244 4984537 -112878090 + AluSq SINE Alu 1 293 -20 291 123 70 26 chr9 4984537 4984651 -112877976 + (TA)n Simple_repeat Simple_repeat 1 119 0 1937 103 31 78 chr9 4984814 4985006 -112877621 - AluSx SINE Alu -8 304 131 2179 60 43 0 chr9 4985006 4985315 -112877312 - AluY SINE Alu 0 311 1 1937 103 31 78 chr9 4985315 4985441 -112877186 - AluSx SINE Alu -181 131 1 409 274 51 0 chr9 4985636 4985753 -112876874 - MIR SINE MIR -27 235 113 1868 121 10 38 chr9 4986737 4987052 -112875575 - AluSx SINE Alu 0 307 1 711 286 122 61 chr9 4987072 4987451 -112875176 - L1 LINE L1 -1792 4354 4000 2245 109 0 0 chr9 4987451 4987745 -112874882 + AluSx SINE Alu 1 294 -18 711 286 122 61 chr9 4987745 4988253 -112874374 - L1 LINE L1 -2146 4000 3408 430 311 34 48 chr9 4988393 4988739 -112873888 + MLT1K LTR MaLR 225 586 -2 2214 100 3 3 chr9 4989106 4989405 -112873222 - AluSx SINE Alu -13 299 1 332 296 32 38 chr9 4989463 4989649 -112872978 - L1 LINE L1 -3093 3053 2869 685 154 52 0 chr9 4989688 4989824 -112872803 - L1MC3 LINE L1 -1 7784 7642 1104 153 62 0 chr9 4989840 4990016 -112872611 - L1MC3 LINE L1 -427 7358 7172 1604 188 19 16 chr9 4990019 4990328 -112872299 - AluJo SINE Alu -2 310 1 354 231 9 37 chr9 4990328 4990436 -112872191 - MLT1F1 LTR MaLR -443 124 20 1389 194 70 39 chr9 4990436 4990792 -112871835 - L1MC3 LINE L1 -709 7076 6710 21 36 0 0 chr9 4990829 4990857 -112871770 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr9 4990876 4990908 -112871719 + AT_rich Low_complexity Low_complexity 1 32 0 44263 41 6 0 chr9 4990908 4997025 -112865602 - L1PA4 LINE L1 -3 6152 2 2103 117 7 7 chr9 4997027 4997325 -112865302 - AluSq SINE Alu -15 298 1 351 246 184 0 chr9 4997336 4997450 -112865177 - MLT1H LTR MaLR -65 484 350 2946 119 113 61 chr9 4997715 4998209 -112864418 - MLT2B1 LTR ERVL 0 520 1 255 313 10 20 chr9 4998993 4999092 -112863535 - MLT1-int LTR MaLR -1269 102 5 964 175 0 75 chr9 5000431 5000631 -112861996 + MER20 DNA MER1_type 1 185 -34 852 152 0 0 chr9 5000713 5000845 -112861782 + FRAM SINE Alu 33 164 -12 791 200 23 46 chr9 5000878 5001053 -112861574 - MER5B DNA MER1_type -1 177 7 297 178 208 20 chr9 5001059 5001160 -112861467 - MIR3 SINE MIR -48 160 41 26 82 0 0 chr9 5001262 5001323 -112861304 + AT_rich Low_complexity Low_complexity 1 61 0 3215 199 27 37 chr9 5001345 5002098 -112860529 + L1ME1 LINE L1 5408 6152 -14 231 295 147 0 chr9 5002105 5002234 -112860393 - HAL1b LINE L1 -6 1342 1195 1089 279 58 49 chr9 5002240 5002809 -112859818 - HAL1b LINE L1 -692 656 83 1358 188 19 16 chr9 5003691 5003947 -112858680 - MER58B DNA MER1_type -5 336 80 592 222 0 0 chr9 5003950 5004049 -112858578 + FLAM_A SINE Alu 1 99 -43 371 277 0 0 chr9 5004064 5004147 -112858480 - MER58B DNA MER1_type -258 83 1 1554 204 59 4 chr9 5004390 5004567 -112858060 - AluJo SINE Alu 0 308 108 189 0 0 0 chr9 5004567 5004588 -112858039 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1554 204 59 4 chr9 5004588 5004703 -112857924 - AluJo SINE Alu -200 108 1 271 258 152 3 chr9 5004875 5004967 -112857660 + MER2 DNA MER2_type 2 104 -135 1362 130 0 5 chr9 5005047 5005239 -112857388 + AluSx SINE Alu 7 197 -115 563 216 203 0 chr9 5006625 5006773 -112855854 + MER5A DNA MER1_type 9 186 -3 696 232 19 19 chr9 5006790 5006847 -112855780 - MER5B DNA MER1_type -5 173 117 2274 116 0 3 chr9 5006847 5007149 -112855478 + AluSg SINE Alu 1 301 -9 696 232 19 19 chr9 5007149 5007246 -112855381 - MER5B DNA MER1_type -60 118 19 2505 77 0 0 chr9 5007427 5007725 -112854902 - AluY SINE Alu -13 298 1 3606 184 11 17 chr9 5007741 5008403 -112854224 - L1MB4 LINE L1 -6 6174 5517 1674 192 0 3 chr9 5009396 5009693 -112852934 - AluJb SINE Alu -16 296 1 1642 169 17 40 chr9 5009698 5010000 -112852627 - AluJo SINE Alu -17 295 1 704 137 56 96 chr9 5010210 5010326 -112852301 - MER53 DNA DNA 0 189 83 2186 117 0 3 chr9 5010326 5010625 -112852002 + AluY SINE Alu 2 299 -12 704 137 56 96 chr9 5010625 5010705 -112851922 - MER53 DNA DNA -106 83 1 348 286 271 18 chr9 5010940 5011331 -112851296 - LTR33 LTR ERVL -27 494 5 482 284 45 13 chr9 5011333 5011488 -112851139 - MIR SINE MIR -19 243 84 23 0 0 0 chr9 5011551 5011574 -112851053 + AT_rich Low_complexity Low_complexity 1 23 0 311 218 46 35 chr9 5011901 5011988 -112850639 - L3 LINE CR1 -7 1570 1483 43 35 0 0 chr9 5012628 5012685 -112849942 + AT_rich Low_complexity Low_complexity 1 57 0 530 211 37 9 chr9 5013367 5013476 -112849151 - MER81 DNA DNA 0 114 3 198 103 0 0 chr9 5013793 5013822 -112848805 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 314 84 35 chr9 5014185 5014403 -112848224 + L1M4 LINE L1 2880 3117 -3029 303 28 0 0 chr9 5014403 5014439 -112848188 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 291 314 84 35 chr9 5014439 5014507 -112848120 + L1M4 LINE L1 3117 3180 -2966 187 284 84 63 chr9 5014739 5014834 -112847793 - MIR SINE MIR -59 149 53 268 284 159 35 chr9 5015311 5015543 -112847084 - L3 LINE CR1 -19 1558 1298 742 223 0 0 chr9 5016144 5016265 -112846362 - FLAM_A SINE Alu -12 121 1 689 247 45 40 chr9 5016265 5016512 -112846115 + L1ME4a LINE L1 5588 5835 -286 347 215 50 91 chr9 5017091 5017212 -112845415 - MLT1H LTR MaLR 0 549 434 888 137 0 0 chr9 5017335 5017466 -112845161 + AluSg/x SINE Alu 176 306 -4 1913 140 0 47 chr9 5017929 5018250 -112844377 - AluSx SINE Alu -6 306 1 214 340 0 10 chr9 5020737 5020840 -112841787 + (CCA)n Simple_repeat Simple_repeat 1 102 0 2398 68 3 0 chr9 5021231 5021526 -112841101 - AluY SINE Alu 0 311 16 306 0 0 0 chr9 5021845 5021879 -112840748 + (TTTTG)n Simple_repeat Simple_repeat 1 34 0 1877 153 0 33 chr9 5021974 5022281 -112840346 - AluSx SINE Alu -15 297 1 1601 182 20 10 chr9 5022516 5022818 -112839809 - AluJb SINE Alu -7 305 1 586 240 6 55 chr9 5022821 5023004 -112839623 - L1ME2 LINE L1 -36 6128 5955 588 240 94 36 chr9 5023018 5023222 -112839405 - L1ME2 LINE L1 -633 5537 5289 851 206 12 0 chr9 5023222 5023382 -112839245 - FRAM SINE Alu -1 165 4 588 240 94 36 chr9 5023382 5023491 -112839136 - L1ME2 LINE L1 -881 5289 5188 442 154 22 33 chr9 5023497 5023588 -112839039 - Charlie1a DNA MER1_type -633 822 733 44785 39 3 0 chr9 5023594 5029726 -112832901 - L1PA4 LINE L1 -6 6149 8 509 194 31 0 chr9 5029733 5029831 -112832796 - Charlie1a DNA MER1_type -710 745 645 827 236 6 0 chr9 5029843 5030000 -112832627 + AluJb SINE Alu 148 305 -7 1460 189 61 10 chr9 5030019 5030331 -112832296 - Charlie1a DNA MER1_type -803 652 325 5564 153 19 38 chr9 5030332 5031071 -112831556 + L1MC2 LINE L1 5308 6023 -321 2355 78 0 10 chr9 5031071 5031377 -112831250 - AluY SINE Alu -8 303 1 5564 153 19 38 chr9 5031377 5031682 -112830945 + L1MC2 LINE L1 6023 6332 -12 1180 181 7 90 chr9 5031682 5031970 -112830657 - Charlie1a DNA MER1_type -1110 345 82 642 250 69 50 chr9 5031992 5032352 -112830275 - L1MDb LINE L1 -4831 1575 1209 2319 91 10 0 chr9 5032371 5032667 -112829960 + AluSx SINE Alu 1 299 -13 2931 9 0 0 chr9 5032685 5033001 -112829626 + AluYb8 SINE Alu 1 316 -2 888 145 52 6 chr9 5033146 5033318 -112829309 - L1MA7 LINE L1 -6 6285 6106 441 245 44 33 chr9 5033336 5033593 -112829034 - L1MDb LINE L1 -5179 1217 938 * 5208 179 27 28 chr9 5033583 5034537 -112828090 + L1 LINE L1 818 1770 -5398 1798 158 22 0 chr9 5034530 5034890 -112827737 + L1 LINE L1 5284 5651 -1516 * 680 122 65 0 chr9 5034895 5035018 -112827609 - L1MA4 LINE L1 -17 6283 6153 1327 275 43 37 chr9 5035024 5035515 -112827112 - L1M3b LINE L1 -5777 504 11 871 210 125 23 chr9 5035533 5036001 -112826626 - L1M4c LINE L1 -4137 2509 1914 674 144 0 0 chr9 5036022 5036126 -112826501 + AluSg/x SINE Alu 170 273 -39 789 157 31 6 chr9 5036173 5036332 -112826295 - L1MC/D LINE L1 -756 5577 5415 8869 155 91 86 chr9 5036337 5036405 -112826222 - L1MCa LINE L1 -3948 2478 2412 1877 183 0 16 chr9 5036405 5036722 -112825905 - AluJo SINE Alu 0 312 1 8869 155 91 86 chr9 5036722 5037196 -112825431 - L1MCa LINE L1 -4014 2412 1942 226 185 0 74 chr9 5037196 5037250 -112825377 - Alu SINE Alu -252 50 1 8869 155 91 86 chr9 5037250 5039147 -112823480 - L1MCa LINE L1 -4484 1942 56 3488 217 66 22 chr9 5039168 5040596 -112822031 - L1M4c LINE L1 -4726 1920 448 628 264 58 14 chr9 5040735 5041012 -112821615 - L1ME4a LINE L1 -296 5825 5537 442 306 153 6 chr9 5041116 5041273 -112821354 - MER5A DNA MER1_type -1 188 9 1153 122 0 43 chr9 5042486 5042674 -112819953 - AluSg/x SINE Alu -1 311 132 511 343 23 23 chr9 5043457 5043629 -112818998 + MER5B DNA MER1_type 3 174 -4 701 152 23 38 chr9 5043641 5043773 -112818854 + MER5B DNA MER1_type 1 130 -48 279 262 0 0 chr9 5043810 5043871 -112818756 + MER5B DNA MER1_type 118 178 0 599 207 200 0 chr9 5043944 5044094 -112818533 - MER5A DNA MER1_type 0 189 10 1777 139 89 4 chr9 5044252 5044533 -112818094 - AluSx SINE Alu -7 305 1 345 47 0 0 chr9 5044784 5044827 -112817800 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 238 39 28 chr9 5045190 5045344 -112817283 - HAL1b LINE L1 -12 1336 1233 206 158 26 0 chr9 5045344 5045382 -112817245 + T-rich Low_complexity Low_complexity 2 40 0 2033 135 0 3 chr9 5046193 5046482 -112816145 + AluSx SINE Alu 6 293 -19 1453 250 69 40 chr9 5046702 5047250 -112815377 + L2 LINE L2 847 1410 -1904 686 286 57 74 chr9 5047466 5047638 -112814989 + LTR16B LTR ERVL 118 282 -182 3074 147 17 28 chr9 5047638 5048242 -112814385 - L1MB8 LINE L1 0 6178 5582 686 286 57 74 chr9 5048242 5048422 -112814205 + LTR16B LTR ERVL 282 464 0 2828 234 119 60 chr9 5048426 5049520 -112813107 + L2 LINE L2 1512 2669 -645 273 193 122 92 chr9 5049531 5049769 -112812858 + L1MC5 LINE L1 7639 7883 -78 377 268 151 34 chr9 5049777 5049797 -112812830 + HAL1b LINE L1 444 460 -888 3234 143 38 4 chr9 5049797 5050329 -112812298 + MER44D DNA MER2_type 1 605 0 377 268 151 34 chr9 5050329 5050375 -112812252 + HAL1b LINE L1 460 499 -849 2508 71 0 3 chr9 5050375 5050684 -112811943 + AluY SINE Alu 1 308 -3 377 268 151 34 chr9 5050684 5050907 -112811720 + HAL1b LINE L1 499 768 -580 2031 126 13 10 chr9 5050958 5051259 -112811368 - AluSx SINE Alu -9 303 2 324 288 65 52 chr9 5051293 5051446 -112811181 + MIR SINE MIR 18 172 -90 398 278 254 28 chr9 5051488 5051772 -112810855 - L2 LINE L2 -38 3275 2928 234 167 167 0 chr9 5052107 5052161 -112810466 - MIR SINE MIR -90 172 110 352 275 28 28 chr9 5052426 5052535 -112810092 - L2 LINE L2 0 3313 3205 1156 181 0 0 chr9 5053194 5053382 -112809245 - MER5A DNA MER1_type 0 189 2 555 312 73 12 chr9 5053639 5053886 -112808741 + MIR SINE MIR 1 262 0 397 327 31 6 chr9 5053881 5054040 -112808587 - MIR SINE MIR -26 236 74 * 225 356 27 0 chr9 5054270 5054343 -112808284 + L2 LINE L2 3195 3269 -3 351 295 89 85 chr9 5054398 5055008 -112807619 + L1ME4a LINE L1 5495 6121 0 2061 128 3 3 chr9 5056795 5057114 -112805513 - AluY SINE Alu 0 311 1 192 308 10 92 chr9 5057840 5058035 -112804592 - L3 LINE CR1 -708 869 691 433 260 122 25 chr9 5058067 5058263 -112804364 - MIR SINE MIR -42 220 6 216 320 48 29 chr9 5058264 5058367 -112804260 + MER5B DNA MER1_type 5 109 -69 253 307 122 42 chr9 5058406 5058595 -112804032 - L3 LINE CR1 -931 646 443 1429 245 49 56 chr9 5059709 5060223 -112802404 + L2 LINE L2 2804 3313 0 333 261 59 128 chr9 5060600 5060937 -112801690 + L1M2 LINE L1 662 975 -5874 319 289 99 99 chr9 5060837 5061565 -112801062 - L1M2 LINE L1 -5479 1370 776 * 1292 156 115 0 chr9 5062522 5062828 -112799799 - MER46B DNA MER2_type -8 228 1 248 289 256 39 chr9 5063246 5063331 -112799296 + MIR SINE MIR 9 74 -188 2358 103 0 0 chr9 5063331 5063641 -112798986 + AluSx SINE Alu 1 310 -2 248 289 256 39 chr9 5063641 5063735 -112798892 + MIR SINE MIR 74 227 -35 876 195 118 10 chr9 5064129 5064441 -112798186 + MER119 DNA MER1_type 137 583 0 300 320 80 8 chr9 5066082 5066207 -112796420 - MIR3 SINE MIR -9 199 66 185 328 40 34 chr9 5066224 5066401 -112796226 - L2 LINE L2 -889 2425 2248 538 297 36 5 chr9 5067619 5067811 -112794816 + L2 LINE L2 1471 1668 -1646 1451 207 134 88 chr9 5067822 5068367 -112794260 - MLT1G LTR MaLR -12 578 14 3242 138 71 3 chr9 5069626 5070192 -112792435 + MER6A DNA MER2_type 2 605 0 825 201 37 27 chr9 5070201 5070385 -112792242 - MER5A DNA MER1_type -3 175 1 911 239 4 39 chr9 5070393 5070623 -112792004 - MER58A DNA MER1_type 0 224 3 358 254 91 0 chr9 5070629 5070739 -112791888 + L2 LINE L2 1707 1826 -1488 289 303 175 20 chr9 5070790 5071041 -112791586 - L1MC/D LINE L1 -2105 5703 5414 1667 123 4 0 chr9 5072101 5072368 -112790259 + AluSq SINE Alu 58 325 0 25 31 0 0 chr9 5072390 5072422 -112790205 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr9 5072630 5072665 -112789962 + AT_rich Low_complexity Low_complexity 1 35 0 1771 154 13 16 chr9 5072799 5073110 -112789517 - AluJb SINE Alu -2 310 1 2459 140 29 7 chr9 5073112 5073527 -112789100 - MSTA LTR MaLR -4 424 1 2421 87 0 0 chr9 5074133 5074432 -112788195 - AluSg SINE Alu -11 299 1 217 161 54 0 chr9 5074597 5074653 -112787974 + A-rich Low_complexity Low_complexity 2 60 0 2234 49 32 14 chr9 5074716 5075000 -112787627 - AluY SINE Alu -20 291 3 1213 79 57 6 chr9 5075381 5075558 -112787069 - MLT2A1 LTR ERVL -8 436 251 436 131 0 0 chr9 5075563 5075624 -112787003 - AluS SINE Alu -255 63 3 273 272 44 44 chr9 5075799 5075935 -112786692 - L1M4 LINE L1 -660 5518 5383 780 192 5 101 chr9 5076671 5076890 -112785737 - MER74B LTR ERVL -367 255 58 2738 222 52 15 chr9 5076891 5077707 -112784920 - L1M4 LINE L1 -1805 4341 3496 6739 64 12 5 chr9 5077813 5079066 -112783561 + L1PA7 LINE L1 4893 6154 0 189 345 101 17 chr9 5081799 5081918 -112780709 - L3b LINE CR1 -99 1484 1356 27 29 0 0 chr9 5082044 5082078 -112780549 + AT_rich Low_complexity Low_complexity 1 34 0 316 290 101 5 chr9 5082526 5082743 -112779884 + L1ME4a LINE L1 5645 5882 -239 396 0 0 0 chr9 5085252 5085296 -112777331 + (CA)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr9 5085295 5085320 -112777307 + (GA)n Simple_repeat Simple_repeat 2 26 0 * 1978 116 7 0 chr9 5085989 5086266 -112776361 - AluSq SINE Alu 0 313 35 274 250 107 68 chr9 5086746 5086951 -112775676 + MLT1J LTR MaLR 61 311 -200 703 19 48 0 chr9 5087111 5087216 -112775411 + (TAGA)n Simple_repeat Simple_repeat 2 111 0 21 0 0 0 chr9 5087762 5087783 -112774844 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5087934 5087956 -112774671 + AT_rich Low_complexity Low_complexity 1 22 0 2370 190 51 0 chr9 5088550 5089039 -112773588 + LTR53 LTR ERVL 6 519 0 195 357 97 32 chr9 5089133 5089441 -112773186 + L2 LINE L2 2634 2961 -353 1992 146 73 2 chr9 5090456 5090880 -112771747 - L1MCa LINE L1 -4112 2314 1861 933 18 0 0 chr9 5091718 5091827 -112770800 - L1PA2 LINE L1 0 6155 6047 487 20 2 0 chr9 5091827 5091900 -112770727 + L1M LINE L1 5279 5352 -812 2939 206 35 21 chr9 5092624 5093429 -112769198 - L1 LINE L1 -3153 2993 2178 786 158 0 29 chr9 5093436 5093607 -112769020 - L1MA7 LINE L1 0 6291 6126 5039 237 98 6 chr9 5093608 5094872 -112767755 + L1M2a LINE L1 -779 600 -5783 4162 222 48 29 chr9 5094866 5096199 -112766428 + L1M2a LINE L1 911 2064 -4320 * 4535 64 25 3 chr9 5096199 5096791 -112765836 - L1PA7 LINE L1 0 6154 5550 4162 222 48 29 chr9 5096791 5097221 -112765406 + L1M2a LINE L1 2064 2484 -3900 896 133 0 0 chr9 5097237 5097357 -112765270 + AluSg/x SINE Alu 174 293 -17 1077 225 44 24 chr9 5097558 5097887 -112764740 + L1MC/D LINE L1 5263 5601 -2207 297 51 0 0 chr9 5097887 5097926 -112764701 + (TG)n Simple_repeat Simple_repeat 2 40 0 869 131 0 8 chr9 5097943 5098065 -112764562 - AluSq/x SINE Alu -192 121 1 2197 121 0 0 chr9 5099880 5100177 -112762450 - AluSx SINE Alu -14 298 2 2020 143 0 7 chr9 5100263 5100563 -112762064 - AluSx SINE Alu -14 298 1 238 304 328 12 chr9 5101223 5101473 -112761154 + L2 LINE L2 2984 3312 -1 268 225 36 0 chr9 5101479 5101590 -112761037 + GA-rich Low_complexity Low_complexity 3 117 0 432 222 116 62 chr9 5102751 5103268 -112759359 + MER34 LTR ERV1 42 542 0 1882 148 3 7 chr9 5103656 5103963 -112758664 + AluSx SINE Alu 1 306 0 33 43 0 0 chr9 5104959 5105006 -112757621 + AT_rich Low_complexity Low_complexity 1 47 0 494 292 149 11 chr9 5106124 5106487 -112756140 - LTR33 LTR ERVL -87 434 22 22 0 0 0 chr9 5106789 5106811 -112755816 + AT_rich Low_complexity Low_complexity 1 22 0 22418 112 13 29 chr9 5106821 5108914 -112753713 + L1P LINE L1 11 2136 -4010 2855 22 0 0 chr9 5108914 5109231 -112753396 + AluYb8 SINE Alu 1 317 -1 22418 112 13 29 chr9 5109231 5110249 -112752378 + L1P LINE L1 2136 3054 -3092 2410 84 0 0 chr9 5110249 5110558 -112752069 + AluY SINE Alu 1 309 -2 22418 112 13 29 chr9 5110558 5111239 -112751388 + L1P LINE L1 3054 3744 -2402 3835 56 14 0 chr9 5111239 5111720 -112750907 + L1PA6 LINE L1 5660 6152 -2 507 329 18 28 chr9 5111735 5112124 -112750503 + L1MC4a LINE L1 5548 5932 -1876 2199 84 24 10 chr9 5112513 5112809 -112749818 - AluSq SINE Alu -13 300 1 6320 136 8 1 chr9 5113169 5114230 -112748397 + L1P LINE L1 3242 4310 -1836 261 0 0 0 chr9 5116882 5116911 -112745716 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr9 5117228 5117252 -112745375 + AT_rich Low_complexity Low_complexity 1 24 0 283 276 126 14 chr9 5117695 5117909 -112744718 + L1ME4a LINE L1 5645 5882 -239 21 0 0 0 chr9 5120353 5120374 -112742253 + AT_rich Low_complexity Low_complexity 1 21 0 194 146 0 24 chr9 5120416 5120457 -112742170 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 2032 104 0 22 chr9 5121128 5121406 -112741221 - AluSq SINE Alu -7 306 35 4244 220 59 15 chr9 5121746 5122366 -112740261 + L1MA9 LINE L1 2527 3118 -3028 2141 145 3 0 chr9 5122366 5122677 -112739950 - AluSx SINE Alu 0 312 1 4244 220 59 15 chr9 5122677 5123354 -112739273 + L1MA9 LINE L1 3118 3881 -2265 2842 99 9 5 chr9 5123362 5123784 -112738843 + L1PB1 LINE L1 5728 6151 0 1711 134 39 36 chr9 5123823 5124159 -112738468 + L1MC3 LINE L1 7441 7777 -8 504 295 5 37 chr9 5124246 5124436 -112738191 + MIR SINE MIR 78 261 -1 4392 181 22 22 chr9 5124517 5125516 -112737111 + L1MA6 LINE L1 5299 6297 -3 6281 192 17 40 chr9 5125521 5127000 -112735627 + L1MA9 LINE L1 3928 5439 -873 2744 20 0 0 chr9 5127000 5127305 -112735322 + AluY SINE Alu 1 305 -6 6281 192 17 40 chr9 5127305 5127705 -112734922 + L1MA9 LINE L1 5439 5757 -555 195 42 0 0 chr9 5127705 5127729 -112734898 + (TG)n Simple_repeat Simple_repeat 1 24 0 6281 192 17 40 chr9 5127729 5128192 -112734435 + L1MA9 LINE L1 5757 6229 -83 351 164 0 0 chr9 5128217 5128272 -112734355 - MER2 DNA MER2_type -10 335 281 * 638 278 11 6 chr9 5128246 5128422 -112734205 - MER8 DNA MER2_type -60 179 3 692 244 121 22 chr9 5128574 5128939 -112733688 - L1M1 LINE L1 -4200 3365 2965 1058 181 0 0 chr9 5128939 5129110 -112733517 + AluSg/x SINE Alu 132 302 -8 2305 269 57 12 chr9 5129110 5129484 -112733143 - L1M2 LINE L1 -4271 2897 2541 2315 90 3 0 chr9 5129484 5129785 -112732842 - AluY SINE Alu -9 302 1 2305 269 57 12 chr9 5129785 5130619 -112732008 - L1M2 LINE L1 -4627 2541 1623 306 106 0 0 chr9 5131427 5131474 -112731153 + (TG)n Simple_repeat Simple_repeat 2 48 0 231 250 25 50 chr9 5131726 5131846 -112730781 - L1MC5 LINE L1 -44 7917 7801 426 184 117 81 chr9 5131887 5132110 -112730517 - L1ME2 LINE L1 -24 6140 5910 21 0 0 0 chr9 5134691 5134712 -112727915 + AT_rich Low_complexity Low_complexity 1 21 0 316 316 105 0 chr9 5134794 5134927 -112727700 + MIR3 SINE MIR 52 198 -10 27 0 0 0 chr9 5135636 5135663 -112726964 + AT_rich Low_complexity Low_complexity 1 27 0 250 313 70 62 chr9 5136504 5136781 -112725846 + L2 LINE L2 2755 3028 -244 695 255 39 77 chr9 5136927 5137237 -112725390 + L2 LINE L2 3010 3307 -6 459 278 125 37 chr9 5137517 5137733 -112724894 + MIR SINE MIR 23 257 -5 22 0 0 0 chr9 5137974 5137996 -112724631 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr9 5138013 5138045 -112724582 + AT_rich Low_complexity Low_complexity 1 32 0 1900 131 48 3 chr9 5138952 5139242 -112723385 - AluSx SINE Alu -9 303 1 1799 203 71 30 chr9 5139697 5140204 -112722423 + MER63C DNA MER1_type 1 528 -402 779 214 99 5 chr9 5140205 5140406 -112722221 - MER58A DNA MER1_type -4 220 1 1270 211 53 65 chr9 5140406 5140824 -112721803 + MER63C DNA MER1_type 518 930 0 201 225 87 55 chr9 5141284 5141382 -112721245 + MIR SINE MIR 85 187 -55 492 213 21 112 chr9 5143974 5144162 -112718465 + MER5B DNA MER1_type 4 174 -4 4056 200 48 46 chr9 5144267 5145353 -112717274 + L1MC3 LINE L1 6018 7105 -680 316 247 12 0 chr9 5145355 5145440 -112717187 + MLT1F1 LTR MaLR 39 124 -443 897 234 62 4 chr9 5145459 5145733 -112716894 + L1MC3 LINE L1 7495 7784 -1 1806 183 13 38 chr9 5146450 5146899 -112715728 + L1 LINE L1 3952 4389 -1757 417 81 0 0 chr9 5146899 5146961 -112715666 + (CA)n Simple_repeat Simple_repeat 2 63 0 5842 109 28 2 chr9 5146975 5148632 -112713995 + L1PA16 LINE L1 4480 6165 -1 6657 47 37 6 chr9 5148636 5150008 -112712619 + L1PA7 LINE L1 4778 6177 0 2536 100 17 0 chr9 5151197 5151546 -112711081 + THE1A LTR MaLR 1 355 0 2003 90 4 4 chr9 5151879 5152135 -112710492 - AluSc SINE Alu -17 292 37 225 337 49 18 chr9 5152296 5152459 -112710168 - LTR67 LTR ERVL -19 538 371 451 219 50 17 chr9 5152767 5152886 -112709741 - MIR SINE MIR -111 151 29 189 331 44 37 chr9 5153071 5153207 -112709420 + L2 LINE L2 1772 1908 -1406 1433 196 79 0 chr9 5153410 5153690 -112708937 + AluJb SINE Alu 1 302 0 297 338 89 14 chr9 5153843 5154056 -112708571 + L2 LINE L2 2088 2316 -998 276 369 130 27 chr9 5154101 5154432 -112708195 + L2 LINE L2 2549 2913 -401 270 309 128 21 chr9 5154446 5154540 -112708087 + MIR SINE MIR 20 123 -139 3375 144 20 8 chr9 5155577 5156181 -112706446 + L1MB3 LINE L1 5478 6088 -95 644 250 60 6 chr9 5156193 5156369 -112706258 + MIR SINE MIR 7 185 -27 296 236 27 73 chr9 5156369 5156479 -112706148 + L1MC4a LINE L1 5530 5634 -2174 183 42 0 0 chr9 5156529 5156553 -112706074 + (CAT)n Simple_repeat Simple_repeat 2 25 0 317 217 60 0 chr9 5156566 5156649 -112705978 + L1MC4a LINE L1 5835 5922 -1886 192 77 0 0 chr9 5156657 5156683 -112705944 + (CATA)n Simple_repeat Simple_repeat 3 28 0 25 31 0 0 chr9 5156865 5156897 -112705730 + AT_rich Low_complexity Low_complexity 1 32 0 398 295 10 82 chr9 5157951 5158158 -112704469 + HAL1 LINE L1 762 953 -1554 572 228 66 12 chr9 5158310 5158477 -112704150 + L1ME3A LINE L1 5836 6011 -159 317 324 86 31 chr9 5158534 5158930 -112703697 + L1ME LINE L1 2397 2824 -3322 604 163 108 0 chr9 5159264 5159393 -112703234 - MER3 DNA MER1_type -1 208 66 513 323 86 14 chr9 5159520 5159950 -112702677 + L1ME LINE L1 5338 5798 -323 2393 76 0 16 chr9 5159975 5160291 -112702336 + AluY SINE Alu 1 311 0 268 271 29 71 chr9 5160291 5160431 -112702196 - MIR SINE MIR -2 260 127 * 809 253 53 32 chr9 5160407 5160692 -112701935 + L2 LINE L2 3021 3311 -2 1818 129 97 23 chr9 5160701 5161050 -112701577 + THE1C LTR MaLR 1 375 0 2337 121 3 16 chr9 5161071 5161451 -112701176 + THE1-int LTR MaLR 549 923 -657 235 174 0 0 chr9 5161502 5161548 -112701079 - MSTA LTR MaLR 0 428 383 619 305 103 47 chr9 5162246 5162811 -112699816 - L2 LINE L2 -217 3055 2454 1127 233 99 35 chr9 5162817 5163251 -112699376 + MLT1C LTR MaLR 6 467 0 3366 104 87 0 chr9 5163281 5163763 -112698864 - MER1A DNA MER1_type 0 527 4 251 318 73 0 chr9 5163784 5163894 -112698733 - L2 LINE L2 -896 2418 2301 205 316 131 53 chr9 5163957 5164201 -112698426 - L2 LINE L2 -1018 2296 2034 25 0 0 0 chr9 5164780 5164805 -112697822 + AT_rich Low_complexity Low_complexity 1 25 0 438 296 10 36 chr9 5164862 5165058 -112697569 - L2 LINE L2 -410 2904 2714 815 88 0 0 chr9 5165239 5165341 -112697286 - AluY SINE Alu -162 149 48 1480 257 41 33 chr9 5165631 5166144 -112696483 + LTR40a LTR ERVL 3 519 0 1072 165 46 46 chr9 5166234 5166452 -112696175 + MER20 DNA MER1_type 2 219 0 416 325 8 0 chr9 5166789 5166906 -112695721 - L2 LINE L2 -380 2934 2817 287 329 206 0 chr9 5166923 5167069 -112695558 - MER5A DNA MER1_type 0 189 14 542 250 68 0 chr9 5167081 5167213 -112695414 - L2 LINE L2 -505 2809 2669 1398 246 55 14 chr9 5167245 5167684 -112694943 + L1ME3 LINE L1 5698 6154 -8 750 254 17 0 chr9 5167705 5167882 -112694745 - L2 LINE L2 -647 2667 2488 1139 251 52 25 chr9 5167892 5168254 -112694373 - L2 LINE L2 -1010 2304 1933 182 265 20 0 chr9 5168277 5168326 -112694301 + MIR SINE MIR 202 251 -11 792 229 6 0 chr9 5168650 5168807 -112693820 + MIR SINE MIR 102 259 -3 2038 215 45 6 chr9 5168826 5169361 -112693266 - MER90 LTR ERV1 0 575 20 180 296 28 42 chr9 5169546 5169617 -112693010 + L3 LINE CR1 276 345 -1232 321 118 0 0 chr9 5170084 5170135 -112692492 + (TG)n Simple_repeat Simple_repeat 2 52 0 184 239 65 0 chr9 5170601 5170647 -112691980 + MIR SINE MIR 158 206 -56 184 224 0 61 chr9 5171185 5171234 -112691393 - L2 LINE L2 -2886 428 383 750 291 45 5 chr9 5172440 5172663 -112689964 + MIR SINE MIR 30 261 -1 2389 102 0 0 chr9 5172729 5173034 -112689593 - AluSx SINE Alu -7 305 1 2328 94 0 0 chr9 5174299 5174598 -112688029 - AluSx SINE Alu -6 306 8 2304 112 0 0 chr9 5175781 5176085 -112686542 - AluSx SINE Alu -7 305 2 2193 117 0 29 chr9 5176171 5176487 -112686140 - AluSx SINE Alu -5 307 1 299 261 318 15 chr9 5177152 5177416 -112685211 + L2 LINE L2 2969 3312 -1 329 266 0 8 chr9 5177418 5177546 -112685081 + GA-rich Low_complexity Low_complexity 3 129 0 454 249 98 61 chr9 5178696 5179216 -112683411 + LTR48 LTR ERV1 1 787 0 1987 120 3 7 chr9 5179599 5179915 -112682712 + AluSx SINE Alu 1 315 0 189 361 76 25 chr9 5180533 5180652 -112681975 + L2 LINE L2 3188 3312 -1 26 64 0 0 chr9 5180911 5180958 -112681669 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr9 5181695 5181716 -112680911 + AT_rich Low_complexity Low_complexity 1 21 0 671 280 123 23 chr9 5182115 5182544 -112680083 - LTR33 LTR ERVL -28 493 22 2536 71 0 3 chr9 5183107 5183417 -112679210 - AluSq SINE Alu -4 309 1 13377 124 10 1 chr9 5183774 5186660 -112675967 + L1PA10 LINE L1 3242 6158 -10 1880 83 33 14 chr9 5186394 5186660 -112675967 + L1PA10 LINE L1 5885 6158 -10 836 104 24 0 chr9 5186660 5186778 -112675849 + L1PB3 LINE L1 6020 6147 -7 25 0 0 0 chr9 5186778 5186803 -112675824 + AT_rich Low_complexity Low_complexity 1 25 0 224 281 90 0 chr9 5187359 5187448 -112675179 + L2 LINE L2 3217 3313 0 180 77 0 0 chr9 5187771 5187797 -112674830 + (TG)n Simple_repeat Simple_repeat 1 26 0 5348 191 36 8 chr9 5188038 5189046 -112673581 + MST-int LTR MaLR 51 1086 -565 3114 75 18 5 chr9 5189046 5189444 -112673183 + MLT2A1 LTR ERVL 1 403 -41 1904 158 22 33 chr9 5189444 5189804 -112672823 + THE1-int LTR MaLR 1065 1420 -160 28 61 0 0 chr9 5189929 5189978 -112672649 + AT_rich Low_complexity Low_complexity 1 49 0 1277 126 177 52 chr9 5190150 5190421 -112672206 + AluSg1 SINE Alu 5 309 0 242 174 22 0 chr9 5190476 5190522 -112672105 - MER65C LTR ERV1 -312 149 103 2298 121 0 3 chr9 5190994 5191307 -112671320 + AluSx SINE Alu 1 312 0 487 279 16 8 chr9 5191357 5191486 -112671141 - MIR SINE MIR -108 154 25 7959 253 74 40 chr9 5191698 5192240 -112670387 + L1MC4a LINE L1 4475 4997 -2811 1277 199 224 9 chr9 5192240 5192566 -112670061 + MSTD LTR MaLR 1 396 0 7959 253 74 40 chr9 5192566 5193203 -112669424 + L1MC4a LINE L1 4997 5611 -2197 2495 181 66 25 chr9 5193203 5193688 -112668939 + MLT1D LTR MaLR 1 505 0 7959 253 74 40 chr9 5193688 5194063 -112668564 + L1MC4a LINE L1 5611 5972 -1836 2137 117 0 3 chr9 5194063 5194353 -112668274 - AluSx SINE Alu -16 296 8 7959 253 74 40 chr9 5194353 5196021 -112666606 + L1MC4a LINE L1 5972 7807 -1 1459 207 43 6 chr9 5197203 5197551 -112665076 + L1MB5 LINE L1 4922 5282 -864 4161 177 7 45 chr9 5199441 5200304 -112662323 + L1MB5 LINE L1 5328 6157 -17 1395 265 84 25 chr9 5200917 5201484 -112661143 + L2 LINE L2 2712 3313 0 382 278 17 57 chr9 5201512 5201688 -112660939 - MIR SINE MIR -2 260 92 899 220 76 73 chr9 5201691 5202088 -112660539 + L1MC5 LINE L1 6827 7228 -733 784 294 54 21 chr9 5202130 5202537 -112660090 + L1MC5 LINE L1 7260 7630 -178 296 317 128 4 chr9 5202798 5203019 -112659608 - HAL1b LINE L1 -701 1651 400 324 284 92 37 chr9 5203109 5203218 -112659409 + L2 LINE L2 3158 3272 0 268 150 0 50 chr9 5203459 5203519 -112659108 + L2 LINE L2 1951 2007 -1307 1040 193 0 6 chr9 5203582 5203763 -112658864 - AluJb SINE Alu 0 312 133 390 143 89 18 chr9 5203764 5203932 -112658695 + (TA)n Simple_repeat Simple_repeat 1 180 0 343 80 94 25 chr9 5203961 5204188 -112658439 + (TA)n Simple_repeat Simple_repeat 1 242 0 335 144 56 25 chr9 5204223 5204383 -112658244 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 31 68 0 0 chr9 5204383 5204442 -112658185 + AT_rich Low_complexity Low_complexity 1 59 0 321 86 36 64 chr9 5204444 5204584 -112658043 + (TTATA)n Simple_repeat Simple_repeat 5 140 0 279 93 0 0 chr9 5204598 5204641 -112657986 + (GA)n Simple_repeat Simple_repeat 1 43 0 506 171 207 18 chr9 5204663 5204774 -112657853 - AluJb SINE Alu -92 220 89 267 238 89 89 chr9 5205533 5205634 -112656993 + MER5B DNA MER1_type 74 174 -4 1336 194 184 45 chr9 5206525 5206898 -112655729 + LTR40c LTR ERVL 1 435 -30 2912 203 88 33 chr9 5206898 5207593 -112655034 + MER44D DNA MER2_type 1 605 0 1336 194 184 45 chr9 5207593 5207622 -112655005 + LTR40c LTR ERVL 435 459 -6 299 302 17 64 chr9 5207656 5207828 -112654799 + HERVL40 LTR ERVL 20 183 -5347 903 218 68 33 chr9 5207938 5208291 -112654336 + HERVL40 LTR ERVL 918 1353 -4177 1700 184 0 13 chr9 5208579 5208888 -112653739 - AluJo SINE Alu -1 311 7 292 247 82 112 chr9 5208916 5209086 -112653541 + HERVL40 LTR ERVL 1380 1544 -3986 1936 162 141 62 chr9 5209262 5209695 -112652932 - MLT1C LTR MaLR 0 467 1 525 227 61 45 chr9 5209695 5209827 -112652800 + HERVL40 LTR ERVL 2682 2815 -2715 1137 239 81 25 chr9 5209873 5210158 -112652469 + LTR40a LTR ERVL 218 518 -1 635 196 240 11 chr9 5210440 5210619 -112652008 - MIR SINE MIR -38 224 5 1468 171 132 48 chr9 5210856 5211150 -112651477 - MLT1D LTR MaLR -2 503 172 2095 121 27 0 chr9 5211150 5211447 -112651180 + AluSx SINE Alu 1 305 -7 1468 171 132 48 chr9 5211447 5211509 -112651118 - MLT1D LTR MaLR -333 172 117 394 278 79 0 chr9 5212008 5212134 -112650493 + MIR3 SINE MIR 50 185 -23 6025 116 47 21 chr9 5212377 5215231 -112647396 + SVA Other Other 19 1386 0 301 255 277 16 chr9 5218583 5218767 -112643860 + MIR SINE MIR 3 234 -28 187 268 0 0 chr9 5218739 5218780 -112643847 + L2 LINE L2 3211 3251 -21 * 633 225 98 140 chr9 5218790 5219190 -112643437 - LTR33 LTR ERVL -138 383 1 3170 39 0 0 chr9 5219199 5219559 -112643068 - L1PA5 LINE L1 0 6154 5795 2007 161 26 77 chr9 5220206 5220697 -112641930 - MER31B LTR ERV1 0 466 1 1115 289 82 17 chr9 5220793 5221257 -112641370 + LTR33 LTR ERVL 12 505 -16 211 281 0 0 chr9 5221495 5221552 -112641075 + (TATATG)n Simple_repeat Simple_repeat 6 62 0 257 223 36 0 chr9 5221686 5221796 -112640831 - L1MC3 LINE L1 -1139 6702 6571 238 232 29 14 chr9 5221746 5221815 -112640812 + L1MCa LINE L1 1995 2064 -4362 * 263 333 0 0 chr9 5221838 5221928 -112640699 + L1MC4 LINE L1 6614 6703 -1339 231 314 47 0 chr9 5221936 5222022 -112640605 - L1MC4 LINE L1 -1339 6703 6614 3296 145 41 23 chr9 5222571 5223135 -112639492 - L1MB7 LINE L1 -19 6165 5592 1077 219 23 0 chr9 5223194 5223409 -112639218 + MIR SINE MIR 9 228 -34 366 239 0 54 chr9 5224085 5224177 -112638450 + MER21B LTR ERV1 1 87 -776 1248 226 124 6 chr9 5224200 5224523 -112638104 + MER21B LTR ERV1 20 380 -483 4348 39 8 0 chr9 5224627 5225140 -112637487 - L1PA5 LINE L1 -384 5770 5254 3354 58 2 2 chr9 5225151 5225550 -112637077 + L1PA5 LINE L1 5755 6153 -1 241 176 27 0 chr9 5226102 5226176 -112636451 + (TA)n Simple_repeat Simple_repeat 2 77 0 521 311 102 22 chr9 5226193 5226794 -112635833 + L2 LINE L2 2458 3174 -139 269 257 112 73 chr9 5228005 5228184 -112634443 - MER5A DNA MER1_type 0 189 4 229 190 69 0 chr9 5228777 5228835 -112633792 - MIR SINE MIR -98 110 49 424 258 108 24 chr9 5228851 5229018 -112633609 - MER112 DNA MER1_type -9 251 71 424 88 206 15 chr9 5229516 5229584 -112633043 + AluS SINE Alu 4 84 -228 561 287 89 3 chr9 5231159 5231441 -112631186 - L1ME4a LINE L1 -267 5854 5549 803 146 0 8 chr9 5231737 5231867 -112630760 - FLAM_C SINE Alu -8 135 7 2386 80 30 0 chr9 5231908 5232209 -112630418 - AluSx SINE Alu -2 310 1 38 39 0 0 chr9 5232886 5232938 -112629689 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5233221 5233242 -112629385 + AT_rich Low_complexity Low_complexity 1 21 0 281 289 185 33 chr9 5233278 5233641 -112628986 + L1ME4a LINE L1 5581 5998 -123 945 188 16 36 chr9 5233659 5233851 -112628776 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5233908 5233951 -112628676 + AT_rich Low_complexity Low_complexity 1 43 0 2021 221 80 39 chr9 5234389 5235062 -112627565 - L1MD1 LINE L1 0 6242 5542 1082 278 67 9 chr9 5235194 5235630 -112626997 + MLT1C LTR MaLR 1 461 -6 233 200 0 0 chr9 5236135 5236185 -112626442 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 4732 129 6 0 chr9 5240914 5241641 -112620986 - L1PA16 LINE L1 -4 6162 5432 3136 258 50 30 chr9 5242531 5243768 -112618859 - L1MD1 LINE L1 -872 5274 4013 1288 238 84 35 chr9 5244000 5244462 -112618165 - L1MD1 LINE L1 0 6242 5758 414 341 17 12 chr9 5244585 5244758 -112617869 + MER5B DNA MER1_type 5 178 0 351 0 0 0 chr9 5245078 5245117 -112617510 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 0 0 0 chr9 5245703 5245725 -112616902 + AT_rich Low_complexity Low_complexity 1 22 0 2858 122 7 5 chr9 5248510 5248937 -112613690 - MSTA LTR MaLR 0 428 1 380 305 19 0 chr9 5249080 5249234 -112613393 - MER5B DNA MER1_type -21 157 1 232 229 33 0 chr9 5250257 5250318 -112612309 - MER5B DNA MER1_type -33 145 83 243 71 214 0 chr9 5250321 5250363 -112612264 + LTR50 LTR ERVL 272 322 -473 595 215 19 65 chr9 5250513 5250774 -112611853 + L1MA4 LINE L1 3210 3458 -4107 * 11406 169 21 41 chr9 5250771 5251332 -112611295 + L1MA4 LINE L1 4156 4727 -2992 2229 114 0 7 chr9 5251332 5251639 -112610988 + AluSx SINE Alu 3 307 -5 11406 169 21 41 chr9 5251639 5254714 -112607913 + L1MA4 LINE L1 4727 7712 -7 900 125 33 20 chr9 5256299 5256451 -112606176 - MSTC LTR MaLR -273 155 2 2030 249 69 25 chr9 5256613 5257307 -112605320 + L1MD1 LINE L1 5509 6233 -9 230 207 0 0 chr9 5257310 5257368 -112605259 + L1MA8 LINE L1 5291 5348 -823 422 163 12 12 chr9 5257379 5257465 -112605162 + L1MB3 LINE L1 6081 6166 -17 1786 178 55 17 chr9 5257485 5257902 -112604725 + L1MA8 LINE L1 5843 6275 -16 356 264 91 30 chr9 5257909 5258140 -112604487 + L1M4 LINE L1 5 249 -6293 356 222 60 26 chr9 5258413 5258530 -112604097 + L1M4 LINE L1 802 922 -5724 231 229 0 0 chr9 5258582 5258630 -112603997 + L1M4 LINE L1 1412 1459 -5116 1752 136 0 4 chr9 5258632 5258889 -112603738 - AluSx SINE Alu -8 304 49 1253 289 43 36 chr9 5258925 5259455 -112603172 + L1M3e LINE L1 1439 1972 -5058 * 5375 48 12 2 chr9 5259454 5260357 -112602270 + L1PA7 LINE L1 5020 5928 -226 1077 137 11 42 chr9 5260357 5260547 -112602080 - THE1B LTR MaLR -180 184 1 1726 150 13 37 chr9 5261059 5261359 -112601268 - AluJo SINE Alu -19 293 1 24 91 0 0 chr9 5261836 5261902 -112600725 + AT_rich Low_complexity Low_complexity 1 66 0 357 326 17 34 chr9 5262907 5263085 -112599542 - MER5B DNA MER1_type -3 175 1 2561 184 8 6 chr9 5263197 5263670 -112598957 + MER101 LTR ERV1 1 474 0 1428 219 66 22 chr9 5263709 5264162 -112598465 + L1MD1 LINE L1 5770 6242 0 2409 228 78 50 chr9 5264432 5264795 -112597832 + L1MB2 LINE L1 4076 4427 -1719 3654 88 32 4 chr9 5264795 5265292 -112597335 + MER9 LTR ERVK 1 511 0 2409 228 78 50 chr9 5265292 5265901 -112596726 + L1MB2 LINE L1 4427 5075 -1071 228 265 163 25 chr9 5265946 5266142 -112596485 + L1MB2 LINE L1 5052 5274 -872 23 0 0 0 chr9 5266474 5266497 -112596130 + AT_rich Low_complexity Low_complexity 1 23 0 21339 173 39 18 chr9 5266688 5272428 -112590199 + L1PA11 LINE L1 914 7609 -3 441 0 0 0 chr9 5272600 5272649 -112589978 + (TG)n Simple_repeat Simple_repeat 1 49 0 1586 128 28 17 chr9 5273151 5273440 -112589187 + LTR22B LTR ERVK 1 292 -200 12290 97 10 1 chr9 5273440 5275097 -112587530 + HERVK22 LTR ERVK 5165 6837 0 2594 140 30 34 chr9 5275097 5275591 -112587036 + LTR22B LTR ERVK 1 492 0 1274 139 29 8 chr9 5278593 5278831 -112583796 + L1MA4 LINE L1 6046 6288 -12 192 326 58 0 chr9 5280112 5280198 -112582429 - L2 LINE L2 -23 3290 3200 1005 214 150 20 chr9 5280501 5280847 -112581780 - MLT1C LTR MaLR -17 450 60 1793 191 42 35 chr9 5280853 5281278 -112581349 - MSTC LTR MaLR 0 428 1 1433 233 50 94 chr9 5281435 5282149 -112580478 + L1MD1 LINE L1 5546 6228 -14 3467 227 38 15 chr9 5282157 5283000 -112579627 + L1MB2 LINE L1 5291 6152 -19 1937 161 79 12 chr9 5283028 5283445 -112579182 + L1MA8 LINE L1 5843 6287 -4 321 254 85 34 chr9 5283451 5283684 -112578943 + L1M4c LINE L1 467 955 -6082 423 0 0 0 chr9 5283875 5283922 -112578705 + (CA)n Simple_repeat Simple_repeat 2 48 0 366 301 175 6 chr9 5284005 5284331 -112578296 + L1M4c LINE L1 1266 1646 -5462 7963 14 0 0 chr9 5284348 5285604 -112577023 - L1HS LINE L1 0 6155 4900 * 18776 24 0 0 chr9 5285599 5287831 -112574796 + L1HS LINE L1 2673 4904 -1242 443 217 24 63 chr9 5287826 5288033 -112574594 + L1M4c LINE L1 1629 1827 -5281 * 1282 313 47 5 chr9 5288028 5288776 -112573851 + L1 LINE L1 3547 4325 -1821 2479 281 46 24 chr9 5288778 5290953 -112571674 + L1M3c LINE L1 1224 3167 -3939 7148 50 0 0 chr9 5290953 5291963 -112570664 - L1PA7 LINE L1 -5 6149 5139 2479 281 46 24 chr9 5291963 5292133 -112570494 + L1M3c LINE L1 3167 3332 -3774 928 173 42 0 chr9 5292167 5292358 -112570269 + L1PB1 LINE L1 2 200 -6663 10602 131 70 16 chr9 5292358 5295577 -112567050 + L1PB1 LINE L1 634 3678 -3189 339 25 0 0 chr9 5295577 5295617 -112567010 + (CA)n Simple_repeat Simple_repeat 2 41 0 10602 131 70 16 chr9 5295617 5295965 -112566662 + L1PB1 LINE L1 3678 6866 -1 2082 252 26 6 chr9 5295975 5296658 -112565969 + L1M3c LINE L1 3348 4044 -3062 682 271 80 3 chr9 5296650 5297023 -112565604 + L1 LINE L1 2810 3211 -2935 * 5007 167 26 7 chr9 5297026 5298757 -112563870 - L1PB4 LINE L1 -12 6201 4246 12763 155 23 31 chr9 5298761 5302148 -112560479 - L1PA6 LINE L1 0 6154 2789 428 128 23 23 chr9 5302159 5302245 -112560382 - L1PB4 LINE L1 -3362 2841 2756 16973 109 31 12 chr9 5302245 5303447 -112559180 - MER57B-int LTR ERV1 -744 6793 5616 6699 112 27 18 chr9 5303447 5304508 -112558119 + MER11C LTR ERVK 1 1071 0 16973 109 31 12 chr9 5304508 5306072 -112556555 - MER57B-int LTR ERV1 -1921 5616 3974 2264 116 11 24 chr9 5306061 5306442 -112556185 - MER57B-int LTR ERV1 -3000 2946 2571 * 838 124 29 0 chr9 5306452 5306589 -112556038 - MER57B-int LTR ERV1 -4616 2921 2781 661 157 0 9 chr9 5306585 5306700 -112555927 - MER57B-int LTR ERV1 -3929 2017 1904 * 3395 134 46 10 chr9 5306701 5307271 -112555356 - MER57B-int LTR ERV1 -4231 3585 3037 204 40 0 0 chr9 5307271 5307296 -112555331 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3395 134 46 10 chr9 5307296 5307499 -112555128 - MER57B-int LTR ERV1 -4779 3037 650 1202 109 0 0 chr9 5307491 5307666 -112554961 - MER57B-int LTR ERV1 -6570 967 793 * 4092 130 24 13 chr9 5307654 5308331 -112554296 - MER57B-int LTR ERV1 -6853 684 1 2508 138 35 19 chr9 5308331 5308758 -112553869 - MER57B LTR ERV1 0 434 1 2299 236 41 70 chr9 5308759 5310437 -112552190 - L1PB4 LINE L1 -3674 2529 690 661 358 42 0 chr9 5310423 5310808 -112551819 - L1PA15-16 LINE L1 -5286 1563 1163 * 848 310 33 35 chr9 5311087 5311638 -112550989 - L1PA15-16 LINE L1 -6297 552 3 3381 180 41 51 chr9 5311639 5312668 -112549959 - L1MCa LINE L1 -4588 1838 731 366 248 19 9 chr9 5313731 5313836 -112548791 - LTR39 LTR ERV1 -81 702 597 992 198 18 94 chr9 5313914 5314253 -112548374 - LTR39 LTR ERV1 -467 316 4 759 299 43 4 chr9 5314393 5314627 -112548000 - MIR SINE MIR 0 262 20 5735 141 11 25 chr9 5315097 5316121 -112546506 + MSTA-int LTR MaLR 572 1580 0 1764 150 203 11 chr9 5316121 5316480 -112546147 + MSTA LTR MaLR 1 428 0 5064 167 33 10 chr9 5317072 5318101 -112544526 - Ricksha_b DNA DNA -13 1241 240 573 197 71 0 chr9 5318112 5318239 -112544388 - Ricksha_b DNA DNA -1117 137 2 2847 232 43 20 chr9 5318906 5319669 -112542958 + L1MCa LINE L1 31 811 -5615 2615 212 16 18 chr9 5319665 5320448 -112542179 + L1PA15-16 LINE L1 1637 2428 -4369 * 2475 116 13 16 chr9 5320516 5320903 -112541724 + MSTB1 LTR MaLR 1 386 -46 5396 146 4 10 chr9 5320903 5322179 -112540448 + L1PA15 LINE L1 4879 6144 -21 2421 247 135 73 chr9 5322196 5322981 -112539646 + L1M4 LINE L1 2247 2982 -3164 1830 164 7 68 chr9 5322981 5323408 -112539219 + MER57A LTR ERV1 3 403 0 2421 247 135 73 chr9 5323408 5323687 -112538940 + L1M4 LINE L1 2982 3242 -2904 2030 139 0 0 chr9 5323687 5323981 -112538646 + AluSx SINE Alu 1 294 -18 2421 247 135 73 chr9 5323981 5324298 -112538329 + L1M4 LINE L1 3242 3538 -2608 2193 108 14 0 chr9 5324298 5324584 -112538043 + AluSc SINE Alu 1 290 -19 2421 247 135 73 chr9 5324584 5324645 -112537982 + L1M4 LINE L1 3538 3594 -2552 13474 89 9 0 chr9 5324645 5327356 -112535271 + L1PA8 LINE L1 3425 6170 -2 2421 247 135 73 chr9 5327356 5327654 -112534973 + L1M4 LINE L1 3594 4099 -2047 2067 166 42 14 chr9 5327663 5328096 -112534531 + L1MA7 LINE L1 5528 5972 -328 760 228 30 42 chr9 5328095 5328332 -112534295 + L1MCb LINE L1 605 838 -5207 * 2447 200 73 10 chr9 5328343 5329042 -112533585 + L1MCb LINE L1 893 1635 -4929 881 194 0 0 chr9 5329046 5329216 -112533411 + L1MB4 LINE L1 3999 4168 -1978 1875 259 75 26 chr9 5329349 5330039 -112532588 - L1M2b LINE L1 -6485 724 1 1515 145 25 0 chr9 5330068 5330350 -112532277 + L1MA7 LINE L1 6001 6289 -2 3247 165 23 59 chr9 5330376 5330735 -112531892 + L1MB4 LINE L1 5435 5805 -375 339 25 0 0 chr9 5330735 5330775 -112531852 + (TG)n Simple_repeat Simple_repeat 2 41 0 3247 165 23 59 chr9 5330775 5331189 -112531438 + L1MB4 LINE L1 5805 6180 0 5009 178 23 22 chr9 5331193 5331481 -112531146 + L1MC2 LINE L1 5023 5309 -1035 12364 161 19 15 chr9 5331481 5332930 -112529697 - L1PA11 LINE L1 -4 6170 4729 197 33 33 0 chr9 5332930 5332960 -112529667 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 12364 161 19 15 chr9 5332960 5334653 -112527974 - L1PA11 LINE L1 -1445 4729 3022 5009 178 23 22 chr9 5334653 5335679 -112526948 + L1MC2 LINE L1 5309 6343 -1 1022 161 15 62 chr9 5335679 5335928 -112526699 + L1MC2 LINE L1 6089 6336 -8 274 256 82 73 chr9 5336265 5336498 -112526129 + MLT1J LTR MaLR 61 333 -178 24745 105 16 14 chr9 5337331 5342518 -112520109 + L1P3 LINE L1 10 5255 -1206 13582 160 19 46 chr9 5342520 5345101 -112517526 - L1M2 LINE L1 -4337 2512 1 1575 164 10 31 chr9 5345400 5345693 -112516934 - AluJb SINE Alu -25 287 1 26 0 0 0 chr9 5346051 5346077 -112516550 + AT_rich Low_complexity Low_complexity 1 26 0 2049 114 41 6 chr9 5346769 5347112 -112515515 - L1MA4A LINE L1 -138 6165 5811 2029 216 64 11 chr9 5347114 5347568 -112515059 - L1M2 LINE L1 -6361 488 11 334 186 14 0 chr9 5347562 5347632 -112514995 - L1M4 LINE L1 -5603 939 869 * 2383 86 0 0 chr9 5347735 5348025 -112514602 + AluY SINE Alu 1 290 -21 1121 279 75 83 chr9 5348140 5348972 -112513655 - L1M4 LINE L1 -5716 826 2 214 172 0 35 chr9 5349214 5349272 -112513355 + CT-rich Low_complexity Low_complexity 2 57 0 1741 156 52 0 chr9 5349290 5349579 -112513048 - AluSx SINE Alu -8 304 1 423 263 95 22 chr9 5349820 5350094 -112512533 - L1M4 LINE L1 -2984 3864 3571 226 222 0 0 chr9 5350458 5350503 -112512124 + (TG)n Simple_repeat Simple_repeat 2 46 0 523 267 119 9 chr9 5350573 5350783 -112511844 - Charlie2 DNA MER1_type 0 2862 2630 14903 131 21 12 chr9 5350963 5353359 -112509268 - Tigger1 DNA MER2_type -2 2416 1 444 266 101 60 chr9 5354224 5354423 -112508204 - MIR SINE MIR -42 220 14 26 0 0 0 chr9 5354607 5354633 -112507994 + AT_rich Low_complexity Low_complexity 1 26 0 340 312 72 38 chr9 5354641 5354878 -112507749 + L1 LINE L1 4268 4512 -1634 42144 49 11 1 chr9 5355532 5361626 -112501001 + L1PA4 LINE L1 1 6151 -4 7323 225 46 14 chr9 5361933 5362300 -112500327 + L1MB7 LINE L1 3365 3719 -2427 1207 179 8 49 chr9 5362300 5362546 -112500081 - MER46A DNA MER2_type 0 236 1 7323 225 46 14 chr9 5362546 5362979 -112499648 + L1MB7 LINE L1 3719 4137 -2009 1945 169 33 0 chr9 5362979 5363311 -112499316 - MER2 DNA MER2_type -1 343 1 7323 225 46 14 chr9 5363311 5364481 -112498146 + L1MB7 LINE L1 4137 5400 -746 2837 19 0 0 chr9 5365881 5366197 -112496430 - AluYb8 SINE Alu -2 316 1 332 252 89 158 chr9 5366434 5366859 -112495768 - L1M4 LINE L1 -5907 942 547 2662 167 22 3 chr9 5367106 5367736 -112494891 + L1MB7 LINE L1 5386 6175 -9 4459 166 59 34 chr9 5369157 5370460 -112492167 - L1MB3 LINE L1 -3 6180 4848 1171 171 9 57 chr9 5371433 5371661 -112490966 - AluJo SINE Alu -95 217 1 2237 111 0 3 chr9 5371894 5372201 -112490426 - AluSg SINE Alu -4 306 1 2100 163 3 9 chr9 5373438 5373787 -112488840 - MER7A DNA MER2_type 0 346 2 1573 164 95 0 chr9 5374069 5374331 -112488296 - AluJo SINE Alu -25 287 1 1220 175 69 0 chr9 5374696 5374913 -112487714 - MER46A DNA MER2_type -3 233 2 323 369 6 18 chr9 5375143 5375311 -112487316 + MER5A DNA MER1_type 2 167 -22 * 507 271 7 21 chr9 5375175 5375319 -112487308 - MER5A DNA MER1_type -22 167 26 278 208 0 0 chr9 5375741 5375789 -112486838 - L2 LINE L2 0 3313 3266 4220 186 37 13 chr9 5376233 5377284 -112485343 - L1MB7 LINE L1 -1 6183 5110 457 305 140 5 chr9 5377296 5377496 -112485131 - L2 LINE L2 -1391 1923 1697 302 320 47 62 chr9 5380341 5380469 -112482158 + L2 LINE L2 3146 3271 -1 335 304 49 10 chr9 5380611 5380713 -112481914 - MIR SINE MIR -139 123 18 4662 160 44 21 chr9 5381137 5381337 -112481290 - L1MB2 LINE L1 -2 6169 5975 2210 109 7 3 chr9 5381337 5381641 -112480986 - AluSg SINE Alu -5 305 1 4662 160 44 21 chr9 5381641 5381968 -112480659 - L1MB2 LINE L1 -196 5975 5657 1835 137 64 20 chr9 5381968 5382325 -112480302 - THE1C LTR MaLR -2 373 1 4662 160 44 21 chr9 5382325 5382828 -112479799 - L1MB2 LINE L1 -514 5657 5121 2625 251 56 18 chr9 5382834 5383693 -112478934 - L1ME3 LINE L1 -8 6154 5263 14718 126 31 16 chr9 5383726 5385838 -112476789 - Tigger1 DNA MER2_type -1 2417 265 1411 205 0 0 chr9 5385838 5386077 -112476550 - MER8 DNA MER2_type 0 239 1 14718 126 31 16 chr9 5386077 5386346 -112476281 - Tigger1 DNA MER2_type -2153 265 1 447 278 124 36 chr9 5386374 5386680 -112475947 - L1MC/D LINE L1 -2179 5629 5297 451 262 78 85 chr9 5386859 5387332 -112475295 - HAL1 LINE L1 -327 2180 1711 2165 101 0 0 chr9 5387636 5387912 -112474715 + AluSg SINE Alu 1 276 -34 1999 141 14 0 chr9 5388016 5388313 -112474314 + AluSx SINE Alu 9 309 -3 1104 174 47 0 chr9 5389226 5389416 -112473211 + MER3 DNA MER1_type 2 200 -9 214 409 64 0 chr9 5389794 5389904 -112472723 - L2 LINE L2 0 3272 3156 30 0 0 0 chr9 5390729 5390759 -112471868 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr9 5391233 5391256 -112471371 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr9 5391410 5391435 -112471192 + AT_rich Low_complexity Low_complexity 1 25 0 2329 92 0 25 chr9 5391632 5391949 -112470678 + AluSc SINE Alu 1 309 0 21 57 0 0 chr9 5392112 5392147 -112470480 + AT_rich Low_complexity Low_complexity 1 35 0 393 349 54 46 chr9 5392212 5392529 -112470098 - L2 LINE L2 -219 3053 2735 315 233 17 0 chr9 5394103 5394163 -112468464 + L1MEd LINE L1 112 172 -5947 664 217 119 7 chr9 5394170 5394313 -112468314 + MER8 DNA MER2_type 1 159 -80 41 21 0 0 chr9 5394314 5394362 -112468265 + AT_rich Low_complexity Low_complexity 1 48 0 482 129 0 0 chr9 5394471 5394541 -112468086 - Tigger2 DNA MER2_type -2648 70 1 1623 282 74 33 chr9 5394602 5395485 -112467142 + L1MEd LINE L1 238 1156 -4963 419 305 0 0 chr9 5395533 5395638 -112466989 - MIR SINE MIR -146 116 12 740 271 78 29 chr9 5395673 5395917 -112466710 - MIR SINE MIR 0 262 7 13936 129 39 30 chr9 5398043 5400439 -112462188 + Tigger1 DNA MER2_type 1 2417 -1 24 53 0 0 chr9 5400682 5400720 -112461907 + AT_rich Low_complexity Low_complexity 1 38 0 32 43 0 0 chr9 5400959 5401005 -112461622 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 5401144 5401176 -112461451 + AT_rich Low_complexity Low_complexity 1 32 0 734 198 21 88 chr9 5403397 5403589 -112459038 + AluJb SINE Alu 114 292 -20 431 320 47 13 chr9 5403650 5403830 -112458797 + MIR3 SINE MIR 1 185 -23 2662 46 0 0 chr9 5404648 5404955 -112457672 - AluY SINE Alu -4 307 1 449 189 72 46 chr9 5405746 5405796 -112456831 + MER103 DNA DNA 10 57 -109 3651 194 58 53 chr9 5405796 5406760 -112455867 - LTR5 LTR ERVK 0 969 1 449 189 72 46 chr9 5406760 5406862 -112455765 + MER103 DNA DNA 57 166 0 266 171 260 14 chr9 5407660 5407806 -112454821 - L1ME4a LINE L1 -202 5919 5738 21 0 0 0 chr9 5408243 5408264 -112454363 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr9 5408293 5408323 -112454304 + AT_rich Low_complexity Low_complexity 1 30 0 299 53 0 0 chr9 5409827 5409865 -112452762 - THE1-int LTR MaLR -125 1455 1418 26 0 0 0 chr9 5409879 5409905 -112452722 + GC_rich Low_complexity Low_complexity 1 26 0 2183 101 70 20 chr9 5410878 5411235 -112451392 - THE1C LTR MaLR 0 375 1 348 279 117 33 chr9 5411375 5411615 -112451012 + L1ME LINE L1 5449 5708 -413 22 0 0 0 chr9 5411697 5411719 -112450908 + AT_rich Low_complexity Low_complexity 1 22 0 412 323 57 6 chr9 5411834 5411992 -112450635 - MIR SINE MIR -79 183 18 1527 214 24 40 chr9 5412349 5412727 -112449900 - MLT1A2 LTR MaLR -2 372 1 2474 84 0 0 chr9 5413018 5413326 -112449301 + AluY SINE Alu 2 309 -2 22 0 0 0 chr9 5413359 5413381 -112449246 + AT_rich Low_complexity Low_complexity 1 22 0 2335 70 0 10 chr9 5422458 5422756 -112439871 - AluY SINE Alu -16 295 1 22 35 0 0 chr9 5423239 5423268 -112439359 + AT_rich Low_complexity Low_complexity 1 29 0 34787 90 17 12 chr9 5424676 5430796 -112431831 + L1PA6 LINE L1 12 6146 -8 252 0 0 0 chr9 5436952 5436980 -112425647 + (T)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr9 5437185 5437210 -112425417 + (A)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr9 5438693 5438718 -112423909 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 6795 66 9 6 chr9 5438718 5439835 -112422792 + L1PA7 LINE L1 5030 6154 0 702 275 140 5 chr9 5439840 5440047 -112422580 - MIR SINE MIR -10 252 18 21 36 0 0 chr9 5440110 5440138 -112422489 + AT_rich Low_complexity Low_complexity 1 28 0 222 310 0 0 chr9 5440398 5440456 -112422171 - L2 LINE L2 -12 3301 3244 794 146 19 149 chr9 5440750 5441018 -112421609 + MLT1A1 LTR MaLR 116 348 -17 238 280 75 11 chr9 5441074 5441164 -112421463 - L2 LINE L2 -548 2766 2671 458 177 308 0 chr9 5441164 5441294 -112421333 + Charlie1 DNA MER1_type 1 170 -2591 * 1348 171 58 3 chr9 5441291 5441583 -112421044 + Charlie1 DNA MER1_type 2454 2761 0 3129 192 97 142 chr9 5441656 5441856 -112420771 - Charlie2a DNA MER1_type 0 2862 2655 556 88 0 0 chr9 5441856 5441936 -112420691 + Alu SINE Alu 217 296 -15 3129 192 97 142 chr9 5441936 5443742 -112418885 - Charlie2a DNA MER1_type -207 2655 871 1258 184 37 110 chr9 5443742 5444116 -112418511 - MLT1A1 LTR MaLR 0 365 19 242 248 192 35 chr9 5444134 5444332 -112418295 - Charlie2a DNA MER1_type -1993 869 641 338 342 167 30 chr9 5444499 5444880 -112417747 - L2 LINE L2 -773 2541 2077 3553 138 60 18 chr9 5444880 5445561 -112417066 - MER67C LTR ERV1 0 710 1 338 342 167 30 chr9 5445561 5445670 -112416957 - L2 LINE L2 -1237 2077 1984 736 202 8 0 chr9 5446325 5446449 -112416178 - MER68 LTR ERV1 0 562 438 * 1257 166 85 0 chr9 5446446 5446669 -112415958 - MER68 LTR ERV1 -320 242 1 2049 183 28 5 chr9 5446913 5446924 -112415703 - L1M4 LINE L1 -695 5489 5480 3935 161 25 4 chr9 5446924 5447650 -112414977 - L1PB4 LINE L1 -3 6153 5413 2049 183 28 5 chr9 5447650 5448235 -112414392 - L1M4 LINE L1 -704 5480 4887 1868 146 3 6 chr9 5448233 5448562 -112414065 + L1M4 LINE L1 4556 4883 -1263 * 672 265 108 79 chr9 5448869 5449630 -112412997 - L1ME4a LINE L1 -74 6047 5258 369 0 0 0 chr9 5451841 5451882 -112410745 + (TG)n Simple_repeat Simple_repeat 2 42 0 23 86 0 0 chr9 5453634 5453692 -112408935 + AT_rich Low_complexity Low_complexity 1 58 0 2610 42 0 3 chr9 5454480 5454789 -112407838 - AluY SINE Alu -3 308 1 2396 79 0 7 chr9 5455196 5455500 -112407127 - AluSq SINE Alu -11 302 1 495 189 175 63 chr9 5456812 5457018 -112405609 + MER106A DNA MER1_type 7 235 -1 11370 124 20 18 chr9 5457194 5459118 -112403509 + L1PA7 LINE L1 1383 4098 -3486 18397 79 10 1 chr9 5459120 5462500 -112400127 + L1PA7 LINE L1 4161 7588 -4 21 0 0 0 chr9 5462664 5462685 -112399942 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 5462803 5462825 -112399802 + AT_rich Low_complexity Low_complexity 1 22 0 312 188 111 68 chr9 5462944 5463061 -112399566 - L1M4 LINE L1 -689 5485 5364 312 308 42 30 chr9 5463389 5463569 -112399058 - MIR3 SINE MIR -23 185 1 284 330 93 22 chr9 5464227 5464409 -112398218 + L2 LINE L2 2590 2784 -530 20541 180 39 14 chr9 5464476 5467424 -112395203 - L1PA13 LINE L1 -2 6812 3941 2228 107 0 0 chr9 5467424 5467714 -112394913 - AluSx SINE Alu -16 296 7 20541 180 39 14 chr9 5467714 5470883 -112391744 - L1PA13 LINE L1 -2873 3941 384 2832 120 5 2 chr9 5470910 5471318 -112391309 - L1PA12 LINE L1 -5579 2002 1594 2512 260 60 7 chr9 5471330 5472103 -112390524 - L1PA12 LINE L1 -4509 3072 2259 348 202 36 12 chr9 5472405 5472489 -112390138 - L1PA12 LINE L1 -5412 2169 2084 718 327 148 26 chr9 5472743 5473162 -112389465 - L1PA12 LINE L1 -6317 1257 788 4529 184 50 11 chr9 5473186 5474607 -112388020 + L1PB4 LINE L1 4321 5809 -347 315 0 0 0 chr9 5474607 5474642 -112387985 + (CA)n Simple_repeat Simple_repeat 2 36 0 4529 184 50 11 chr9 5474642 5474992 -112387635 + L1PB4 LINE L1 5809 6144 -12 281 239 71 9 chr9 5474998 5475111 -112387516 + HsTC2 DNA Tc2 251 370 -1528 1688 233 118 31 chr9 5475167 5476507 -112386120 + L1MEc LINE L1 1850 3290 -2925 4851 129 16 0 chr9 5476509 5477244 -112385383 + L1P3 LINE L1 2 748 -5713 9415 62 1 1 chr9 5477244 5479248 -112383379 + L1PA4 LINE L1 4145 6155 0 3047 52 0 5 chr9 5479306 5479694 -112382933 + L1PA7 LINE L1 5769 6154 0 2409 215 178 96 chr9 5479694 5480679 -112381948 + L1MEc LINE L1 3281 4183 -2032 737 142 17 0 chr9 5480679 5480799 -112381828 + AluSg/x SINE Alu 185 306 -6 2409 215 178 96 chr9 5480799 5481406 -112381221 + L1MEc LINE L1 4183 5133 -1082 9899 162 25 27 chr9 5481414 5483650 -112378977 + L1M1 LINE L1 1931 4166 -3399 2234 101 0 13 chr9 5483650 5483957 -112378670 + AluSq SINE Alu 1 303 -10 9899 162 25 27 chr9 5483957 5485581 -112377046 + L1M1 LINE L1 4166 5792 -1773 1589 141 42 15 chr9 5485582 5485845 -112376782 + AluJo SINE Alu 25 294 -18 978 188 11 21 chr9 5486839 5487025 -112375602 - MER5A DNA MER1_type -1 188 5 4165 173 58 13 chr9 5488248 5488686 -112373941 - L1MB7 LINE L1 -20 6164 5747 2126 122 0 10 chr9 5488686 5488990 -112373637 + AluSx SINE Alu 1 301 -11 4165 173 58 13 chr9 5488990 5489385 -112373242 - L1MB7 LINE L1 -437 5747 5294 212 0 36 0 chr9 5489962 5489990 -112372637 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 457 291 138 9 chr9 5490166 5490602 -112372025 + L1 LINE L1 3196 3687 -2459 21494 169 44 24 chr9 5490714 5492688 -112369939 + L1PA10 LINE L1 1 1933 -4550 2116 121 3 3 chr9 5492688 5492985 -112369642 - AluSq SINE Alu -15 298 2 21494 169 44 24 chr9 5492985 5496407 -112366220 + L1PA10 LINE L1 1933 5661 -822 2228 118 3 0 chr9 5496407 5496704 -112365923 + AluSx SINE Alu 1 298 -14 21494 169 44 24 chr9 5496704 5497545 -112365082 + L1PA10 LINE L1 5661 6483 0 4023 253 117 49 chr9 5497632 5498700 -112363927 + L2 LINE L2 1361 2355 -958 2403 73 0 3 chr9 5498700 5499000 -112363627 - AluY SINE Alu -12 299 1 4023 253 117 49 chr9 5499000 5499280 -112363347 + L2 LINE L2 2355 2614 -699 3612 123 13 8 chr9 5499280 5499802 -112362825 + MER1A DNA MER1_type 3 527 0 4023 253 117 49 chr9 5499802 5500278 -112362349 + L2 LINE L2 2614 3312 -1 244 303 40 0 chr9 5500373 5500472 -112362155 + L1 LINE L1 3987 4089 -2057 331 226 99 23 chr9 5500540 5500761 -112361866 + L1 LINE L1 4231 4468 -1678 3533 226 62 51 chr9 5500847 5501626 -112361001 + L1PA12 LINE L1 4 802 -6779 2230 127 3 0 chr9 5501626 5501933 -112360694 - AluSx SINE Alu -2 310 3 3533 226 62 51 chr9 5501933 5502339 -112360288 + L1PA12 LINE L1 802 1202 -6379 6383 79 34 0 chr9 5502343 5503779 -112358848 + L1PA11 LINE L1 4716 6174 0 5784 50 143 60 chr9 5503813 5504885 -112357742 + MER11A LTR ERVK 1 1266 0 342 324 115 61 chr9 5504887 5505329 -112357298 + L1ME3A LINE L1 4581 5046 -1100 568 325 99 11 chr9 5505474 5506024 -112356603 + L1ME3A LINE L1 5256 5847 -323 466 259 114 6 chr9 5506194 5506352 -112356275 + L2 LINE L2 3135 3309 -4 25 0 0 0 chr9 5506977 5507002 -112355625 + AT_rich Low_complexity Low_complexity 1 25 0 474 247 213 7 chr9 5507577 5507727 -112354900 + MER5A DNA MER1_type 9 189 0 197 167 24 0 chr9 5507906 5507948 -112354679 - L2 LINE L2 0 3313 3271 394 181 26 60 chr9 5508552 5508668 -112353959 + MER45 DNA AcHobo 1463 1574 -7 300 313 134 18 chr9 5508729 5508841 -112353786 - L2 LINE L2 -206 3066 2942 190 278 28 28 chr9 5509880 5509952 -112352675 + L2 LINE L2 3161 3232 -40 880 214 54 17 chr9 5510749 5511043 -112351584 + L1M1 LINE L1 3358 3662 -3903 2239 219 33 10 chr9 5511049 5511377 -112351250 + L1M1 LINE L1 4027 4377 -3188 2099 122 0 3 chr9 5511377 5511665 -112350962 + AluSx SINE Alu 1 287 -25 2239 219 33 10 chr9 5511665 5511943 -112350684 + L1M1 LINE L1 4377 4647 -2918 1882 255 49 89 chr9 5511938 5512964 -112349663 - L1P3 LINE L1 -5467 994 10 * 352 58 0 39 chr9 5513095 5513147 -112349480 + THE1B LTR MaLR 1 50 -314 530 306 100 24 chr9 5513718 5514279 -112348348 + L2 LINE L2 2503 3174 -139 269 279 101 62 chr9 5515490 5515669 -112346958 - MER5A DNA MER1_type 0 189 4 234 190 69 0 chr9 5516262 5516320 -112346307 - MIR SINE MIR -98 110 49 348 182 164 0 chr9 5516393 5516503 -112346124 - MER112 DNA MER1_type -62 198 71 365 88 206 15 chr9 5517001 5517069 -112345558 + AluS SINE Alu 4 84 -218 447 287 89 3 chr9 5518644 5518926 -112343701 - L1ME4a LINE L1 -267 5854 5549 733 154 0 8 chr9 5519222 5519352 -112343275 - FLAM_C SINE Alu -8 135 7 2391 80 30 0 chr9 5519393 5519695 -112342932 - AluSx SINE Alu -1 311 1 38 39 0 0 chr9 5520372 5520424 -112342203 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr9 5520707 5520728 -112341899 + AT_rich Low_complexity Low_complexity 1 21 0 317 239 0 14 chr9 5520829 5520900 -112341727 + L2 LINE L2 3244 3313 0 310 260 273 9 chr9 5520900 5521127 -112341500 + L1ME4a LINE L1 5712 5998 -123 869 188 16 36 chr9 5521145 5521337 -112341290 - MER20 DNA MER1_type 0 219 32 22 70 0 0 chr9 5521394 5521437 -112341190 + AT_rich Low_complexity Low_complexity 1 43 0 437 294 105 57 chr9 5521899 5522423 -112340204 - L1MC/D LINE L1 -2005 5803 5255 416 304 24 16 chr9 5522618 5522743 -112339884 + L2 LINE L2 3183 3308 -5 182 61 0 30 chr9 5524913 5524946 -112337681 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 271 268 143 62 chr9 5525607 5525816 -112336811 - L3 LINE CR1 -7 1570 1345 581 223 4 128 chr9 5527260 5527525 -112335102 + L2 LINE L2 3082 3313 0 263 319 11 21 chr9 5527721 5527815 -112334812 - MIR SINE MIR -24 238 146 671 253 13 13 chr9 5527901 5528051 -112334576 - MIR SINE MIR -111 151 2 240 269 86 6 chr9 5528154 5528264 -112334363 - Charlie7 DNA MER1_type -4 2608 2477 336 200 0 12 chr9 5528264 5528344 -112334283 - MER116 DNA Mariner -1 79 1 240 269 86 6 chr9 5528344 5528408 -112334219 - Charlie7 DNA MER1_type -135 2477 2420 918 223 137 15 chr9 5528412 5528749 -112333878 - Charlie7 DNA MER1_type -1900 712 335 1062 186 45 4 chr9 5529272 5529527 -112333100 + L1MC3 LINE L1 6196 6357 -2 493 96 0 24 chr9 5529856 5529939 -112332688 - L1PB4 LINE L1 -8 6148 6068 300 263 79 0 chr9 5530529 5530605 -112332022 + L2 LINE L2 3191 3272 0 192 384 40 0 chr9 5530684 5530783 -112331844 - L2 LINE L2 -7 3265 3163 381 239 123 29 chr9 5531082 5531220 -112331407 + MIR SINE MIR 80 230 -32 384 232 35 84 chr9 5531623 5531765 -112330862 + MIR SINE MIR 72 206 -56 2268 117 0 0 chr9 5532183 5532482 -112330145 + AluSx SINE Alu 1 299 -13 246 327 58 10 chr9 5532608 5532712 -112329915 - MIR SINE MIR -153 109 1 351 275 59 82 chr9 5534498 5534581 -112328046 - MIR SINE MIR -27 235 152 225 0 0 0 chr9 5534581 5534606 -112328021 + (GA)n Simple_repeat Simple_repeat 2 26 0 351 275 59 82 chr9 5534606 5534770 -112327857 - MIR SINE MIR -110 152 2 276 188 0 0 chr9 5535004 5535052 -112327575 + MER81 DNA DNA 3 50 -64 369 279 121 7 chr9 5536043 5536183 -112326444 - MIR SINE MIR -58 204 49 486 326 56 25 chr9 5536228 5536424 -112326203 - L2 LINE L2 0 3272 3071 24 32 0 0 chr9 5537829 5537860 -112324767 + AT_rich Low_complexity Low_complexity 1 31 0 2231 110 3 0 chr9 5538568 5538868 -112323759 - AluSq SINE Alu -12 301 1 23 33 0 0 chr9 5539149 5539179 -112323448 + AT_rich Low_complexity Low_complexity 1 30 0 25451 60 3 4 chr9 5539193 5545345 -112317282 - L1PA5 LINE L1 -2 6152 3 3580 125 8 43 chr9 5545357 5545549 -112317078 - L1MA6 LINE L1 -22 6278 6081 2110 138 50 56 chr9 5545549 5545926 -112316701 - THE1C LTR MaLR 0 375 1 3580 125 8 43 chr9 5545926 5546228 -112316399 - L1MA6 LINE L1 -219 6081 5770 405 0 0 0 chr9 5546228 5546273 -112316354 + (TG)n Simple_repeat Simple_repeat 2 46 0 3580 125 8 43 chr9 5546273 5546288 -112316339 - L1MA6 LINE L1 -530 5770 5756 710 153 89 24 chr9 5546288 5546412 -112316215 - FLAM_A SINE Alu -1 132 1 3580 125 8 43 chr9 5546412 5546525 -112316102 - L1MA6 LINE L1 -544 5756 5676 205 106 21 21 chr9 5546531 5546578 -112316049 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 45 45 0 0 chr9 5547286 5547352 -112315275 + AT_rich Low_complexity Low_complexity 1 66 0 195 238 188 38 chr9 5547858 5547938 -112314689 - L2 LINE L2 -12 3260 3169 874 281 42 4 chr9 5548280 5548518 -112314109 - MIR SINE MIR -13 249 3 1883 249 55 21 chr9 5548679 5549582 -112313045 - L1ME LINE L1 -438 5724 4787 1930 154 0 0 chr9 5549803 5550101 -112312526 + AluJb SINE Alu 1 298 -14 1390 112 0 39 chr9 5550307 5550513 -112312114 - AluSg/x SINE Alu -10 300 103 361 268 48 26 chr9 5551333 5551539 -112311088 - MLT1L LTR MaLR -363 252 5 194 311 98 59 chr9 5551556 5551810 -112310817 + L2 LINE L2 2603 2866 -448 332 176 0 0 chr9 5551824 5551875 -112310752 - MER58A DNA MER1_type -33 191 141 699 77 30 179 chr9 5551894 5551992 -112310635 + Tigger7 DNA MER2_type 2232 2296 -195 861 137 23 8 chr9 5551992 5552123 -112310504 - FLAM_C SINE Alu 0 133 1 699 77 30 179 chr9 5552123 5552192 -112310435 + Tigger7 DNA MER2_type 2296 2374 -117 814 123 0 16 chr9 5552275 5552397 -112310230 + Tigger7 DNA MER2_type 2368 2487 0 675 248 14 0 chr9 5552397 5552538 -112310089 - MER58A DNA MER1_type 0 143 1 690 296 94 14 chr9 5553213 5553436 -112309191 + MIR SINE MIR 15 255 -7 1083 267 49 21 chr9 5553525 5553813 -112308814 - MLT1J1 LTR MaLR -128 318 23 667 321 109 44 chr9 5554202 5554726 -112307901 - L2 LINE L2 0 3313 2728 2368 97 0 0 chr9 5554726 5555035 -112307592 - AluSc SINE Alu 0 309 1 667 321 109 44 chr9 5555035 5555182 -112307445 - L2 LINE L2 -585 2728 2592 841 285 34 4 chr9 5556898 5557133 -112305494 + MIR SINE MIR 8 249 -13 548 235 53 82 chr9 5557997 5558240 -112304387 + L1ME4a LINE L1 5631 5866 -255 466 17 0 34 chr9 5558301 5558360 -112304267 + AluY SINE Alu 242 298 -13 1845 51 0 0 chr9 5558364 5558578 -112304049 + L1PA5 LINE L1 5933 6146 -8 22 0 0 0 chr9 5558578 5558600 -112304027 + AT_rich Low_complexity Low_complexity 1 22 0 815 272 40 36 chr9 5558934 5559184 -112303443 - MIR SINE MIR -4 258 8 260 200 0 20 chr9 5559364 5559414 -112303213 + MIR SINE MIR 101 149 -59 331 273 147 47 chr9 5559624 5559774 -112302853 + L2 LINE L2 3106 3270 -2 2140 130 19 3 chr9 5560028 5560335 -112302292 - AluJb SINE Alu 0 312 1 348 267 147 47 chr9 5560555 5560705 -112301922 - L2 LINE L2 -2 3270 3106 517 291 32 6 chr9 5561000 5561158 -112301469 - MER5B DNA MER1_type -16 162 1 7801 45 7 0 chr9 5561999 5563334 -112299293 - L1PA4 LINE L1 0 6155 4817 2871 165 49 27 chr9 5563518 5563574 -112299053 - L1MB8 LINE L1 0 6178 6125 2241 147 6 32 chr9 5563574 5563920 -112298707 + MER1B DNA MER1_type 1 337 0 2871 165 49 27 chr9 5563920 5564450 -112298177 - L1MB8 LINE L1 -53 6125 5579 211 194 0 0 chr9 5565024 5565060 -112297567 + CT-rich Low_complexity Low_complexity 5 40 0 1025 181 0 0 chr9 5565155 5565321 -112297306 - FRAM SINE Alu -11 165 1 1444 114 14 5 chr9 5565332 5565552 -112297075 - L1MA5 LINE L1 -5 6295 6074 2320 91 0 3 chr9 5566048 5566346 -112296281 - AluSx SINE Alu -15 297 1 286 235 12 35 chr9 5566629 5566714 -112295913 - MIR SINE MIR -7 255 173 310 193 12 12 chr9 5566715 5566798 -112295829 + (CATTA)n Simple_repeat Simple_repeat 2 84 0 229 369 0 0 chr9 5566850 5566934 -112295693 + MIR SINE MIR 61 144 -118 549 176 0 0 chr9 5567155 5567240 -112295387 + AluJb SINE Alu 1 85 -227 2208 110 0 3 chr9 5567240 5567541 -112295086 - LTR46 LTR ERV1 0 460 161 1963 162 48 14 chr9 5567544 5567902 -112294725 - LTR46-int LTR ERV1 -3 6982 6613 2765 88 0 1 chr9 5568018 5568426 -112294201 + LTR46 LTR ERV1 1 460 0 1293 186 0 4 chr9 5568428 5568654 -112293973 + AluJb SINE Alu 83 307 -5 19688 175 24 19 chr9 5568855 5574892 -112287735 + L1PA12 LINE L1 1 6115 -704 2351 82 0 3 chr9 5574892 5575185 -112287442 + AluY SINE Alu 1 292 -19 19688 175 24 19 chr9 5575185 5575839 -112286788 + L1PA12 LINE L1 6115 6764 -55 227 200 0 0 chr9 5576269 5576309 -112286318 - MLT1K LTR MaLR -359 229 190 183 308 223 0 chr9 5576792 5576922 -112285705 + MIR SINE MIR 34 192 -70 999 208 98 4 chr9 5576946 5577191 -112285436 + MLT1C LTR MaLR 9 276 -191 2540 161 9 0 chr9 5577391 5577826 -112284801 + L1P LINE L1 3951 4389 -1757 269 173 19 0 chr9 5579024 5579076 -112283551 + L3 LINE CR1 1518 1570 -7 328 308 38 53 chr9 5579219 5579352 -112283275 + L2 LINE L2 3142 3272 0 253 349 77 12 chr9 5580583 5580752 -112281875 + L2 LINE L2 2872 3051 -221 227 263 18 0 chr9 5581144 5581201 -112281426 - Charlie8 DNA MER1_type -1010 1407 1350 283 278 151 56 chr9 5581545 5581671 -112280956 + L2 LINE L2 3134 3271 -1 967 162 5 89 chr9 5581973 5582164 -112280463 + FAM SINE Alu 1 175 0 257 269 26 13 chr9 5582262 5582340 -112280287 - L2 LINE L2 -209 3063 2985 4666 190 99 30 chr9 5582754 5583021 -112279606 - MER52A LTR ERV1 -518 1237 990 2338 97 3 3 chr9 5583021 5583331 -112279296 + AluSg SINE Alu 1 310 0 4666 190 99 30 chr9 5583331 5583421 -112279206 - MER52A LTR ERV1 -765 990 908 2298 91 10 3 chr9 5583421 5583729 -112278898 - AluSq SINE Alu -3 310 1 4666 190 99 30 chr9 5583729 5584444 -112278183 - MER52A LTR ERV1 -847 908 1 353 100 20 0 chr9 5584446 5584496 -112278131 + AluJ/FRAM SINE Alu 225 275 -27 582 314 91 19 chr9 5584634 5584898 -112277729 - MER115 DNA AcHobo -390 303 21 1337 246 87 27 chr9 5584900 5585303 -112277324 - L2 LINE L2 -519 2795 2369 358 345 54 14 chr9 5585472 5585620 -112277007 - MIR SINE MIR -96 166 13 1616 261 183 30 chr9 5586007 5586301 -112276326 + L2 LINE L2 1673 1921 -1393 3291 149 29 23 chr9 5586301 5586856 -112275771 - MER74A LTR ERVL 0 558 1 1616 261 183 30 chr9 5586856 5587304 -112275323 + L2 LINE L2 1921 2529 -785 2571 197 8 126 chr9 5587304 5588177 -112274450 + L1MB7 LINE L1 4481 5250 -896 * 3377 161 7 11 chr9 5588168 5588738 -112273889 + L1MB7 LINE L1 5567 6134 -50 228 187 0 93 chr9 5588745 5588820 -112273807 + L1MA10 LINE L1 6263 6330 -4 27 49 0 0 chr9 5588820 5588861 -112273766 + AT_rich Low_complexity Low_complexity 1 41 0 386 262 91 77 chr9 5588871 5589092 -112273535 + L2 LINE L2 2548 2771 -543 543 264 167 17 chr9 5591438 5591612 -112271015 - MIR SINE MIR -11 251 52 28 29 0 0 chr9 5592163 5592198 -112270429 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr9 5592418 5592440 -112270187 + AT_rich Low_complexity Low_complexity 1 22 0 2103 119 16 7 chr9 5592445 5592748 -112269879 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr9 5592881 5592903 -112269724 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr9 5593021 5593046 -112269581 + AT_rich Low_complexity Low_complexity 1 25 0 2337 84 0 0 chr9 5593146 5593443 -112269184 + AluSg SINE Alu 1 297 -13 25 31 0 0 chr9 5593567 5593599 -112269028 + AT_rich Low_complexity Low_complexity 1 32 0 252 175 53 18 chr9 5593680 5593737 -112268890 - L1ME3A LINE L1 -95 6075 6017 1597 188 10 10 chr9 5593829 5594117 -112268510 - AluJo SINE Alu -24 288 1 252 219 146 57 chr9 5594203 5594326 -112268301 - L1ME3A LINE L1 -268 5853 5720 2699 196 69 13 chr9 5594549 5594670 -112267957 - L1ME1 LINE L1 -187 5979 5866 180 0 0 0 chr9 5594670 5594690 -112267937 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2699 196 69 13 chr9 5594690 5595200 -112267427 - L1ME1 LINE L1 -300 5866 5458 2186 123 0 3 chr9 5595200 5595509 -112267118 - AluSx SINE Alu -4 308 1 2699 196 69 13 chr9 5595509 5595608 -112267019 - L1ME1 LINE L1 -708 5458 5366 221 58 77 0 chr9 5595616 5595668 -112266959 + (TA)n Simple_repeat Simple_repeat 1 56 0 1836 167 3 13 chr9 5595684 5595984 -112266643 - AluJo SINE Alu -15 297 1 2161 190 40 77 chr9 5595993 5596126 -112266501 - L1ME1 LINE L1 -757 5389 5253 1694 157 25 0 chr9 5596126 5596400 -112266227 - AluSx SINE Alu -23 289 9 2161 190 40 77 chr9 5596400 5596913 -112265714 - L1ME1 LINE L1 -893 5253 4767 671 268 93 0 chr9 5597966 5598160 -112264467 + MIR SINE MIR 49 260 -2 411 224 299 0 chr9 5598209 5598343 -112264284 - MER5A DNA MER1_type -6 183 10 510 277 40 40 chr9 5598394 5598571 -112264056 - MER5B DNA MER1_type -1 177 1 215 308 192 42 chr9 5599890 5600010 -112262617 - L2 LINE L2 -2 3270 3133 581 316 66 20 chr9 5600196 5600440 -112262187 - MIR SINE MIR -6 256 2 233 73 0 24 chr9 5600490 5600531 -112262096 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 985 251 112 27 chr9 5600729 5601103 -112261524 + MER113 DNA MER1_type? 116 521 0 302 304 143 54 chr9 5601103 5601327 -112261300 + MIR SINE MIR 13 256 -6 555 240 85 25 chr9 5601393 5601593 -112261034 + MIR SINE MIR 51 262 0 532 246 41 86 chr9 5602797 5603065 -112259562 - MER112 DNA MER1_type 0 256 1 248 290 0 0 chr9 5603066 5603135 -112259492 - MIR3 SINE MIR -49 159 91 518 308 12 12 chr9 5603546 5603715 -112258912 + MIR SINE MIR 89 257 -5 804 273 144 11 chr9 5604117 5604395 -112258232 + Charlie2 DNA MER1_type 4 318 -2544 2214 210 101 30 chr9 5604407 5604857 -112257770 + Charlie2 DNA MER1_type 1871 2388 -474 3527 39 17 0 chr9 5604857 5605263 -112257364 + L1PA4 LINE L1 5743 6155 0 2214 210 101 30 chr9 5605263 5605503 -112257124 + Charlie2 DNA MER1_type 2388 2610 -252 2521 52 0 10 chr9 5605781 5606091 -112256536 + AluY SINE Alu 1 307 -4 1264 101 48 0 chr9 5606220 5606408 -112256219 - L1MA5A LINE L1 -3 6294 6098 419 265 70 22 chr9 5606412 5606642 -112255985 + Charlie2 DNA MER1_type 2606 2846 -16 12851 165 27 18 chr9 5607231 5610633 -112251994 + L1PB1 LINE L1 2598 6032 -119 2500 69 0 0 chr9 5610635 5610938 -112251689 + AluY SINE Alu 1 303 -8 22 56 0 0 chr9 5611186 5611222 -112251405 + AT_rich Low_complexity Low_complexity 1 36 0 255 308 59 18 chr9 5611312 5611481 -112251146 + L3 LINE CR1 270 445 -1132 1192 266 110 17 chr9 5611512 5611985 -112250642 - LTR33A LTR ERVL -5 518 2 209 285 76 101 chr9 5612008 5612166 -112250461 + L3 LINE CR1 473 626 -951 411 358 55 5 chr9 5612261 5612479 -112250148 + L3 LINE CR1 1044 1272 -305 288 275 290 15 chr9 5612482 5612682 -112249945 - MIR SINE MIR 0 262 8 308 312 7 78 chr9 5612714 5612868 -112249759 + L3 LINE CR1 1326 1468 -109 1157 208 60 18 chr9 5612894 5613230 -112249397 + L1M4 LINE L1 2368 2717 -3429 229 233 50 0 chr9 5614566 5614626 -112248001 - L1ME LINE L1 -536 5585 5523 3360 154 64 43 chr9 5614947 5615032 -112247595 - L1MA7 LINE L1 -1 6290 6208 2327 103 7 3 chr9 5615032 5615342 -112247285 + AluSq SINE Alu 1 311 -2 3360 154 64 43 chr9 5615342 5615976 -112246651 - L1MA7 LINE L1 -83 6208 5556 219 149 0 64 chr9 5616047 5616094 -112246533 + (TG)n Simple_repeat Simple_repeat 2 45 0 439 348 49 18 chr9 5616380 5616604 -112246023 + MIR SINE MIR 32 262 0 1714 236 113 11 chr9 5617009 5617480 -112245147 - LTR33 LTR ERVL -2 519 1 2122 199 44 58 chr9 5617788 5618077 -112244550 - MLT1D LTR MaLR -7 498 217 2235 109 3 0 chr9 5618077 5618370 -112244257 - AluSx SINE Alu -18 294 1 2122 199 44 58 chr9 5618370 5618582 -112244045 - MLT1D LTR MaLR -288 217 4 927 313 67 46 chr9 5619335 5619859 -112242768 - ERVL LTR ERVL -420 5344 4810 892 178 5 49 chr9 5620321 5620506 -112242121 + AluJo SINE Alu 123 299 -13 192 182 0 45 chr9 5621574 5621618 -112241009 + MIR SINE MIR 213 254 -8 591 286 45 15 chr9 5622166 5622365 -112240262 + MIR SINE MIR 13 217 -45 2218 108 0 7 chr9 5622510 5622806 -112239821 + AluSq SINE Alu 1 294 -19 650 261 153 47 chr9 5622878 5623304 -112239323 - MLT1J LTR MaLR -10 501 31 434 323 12 24 chr9 5623821 5623988 -112238639 + MIR3 SINE MIR 37 201 -7 247 298 0 0 chr9 5624555 5624612 -112238015 + polypurine Low_complexity Low_complexity 1 57 0 216 67 0 0 chr9 5624629 5624659 -112237968 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 879 264 65 0 chr9 5624676 5624892 -112237735 + MIR SINE MIR 13 242 -20 257 340 11 0 chr9 5626159 5626253 -112236374 + GA-rich Low_complexity Low_complexity 2 96 0 264 357 37 1 chr9 5626827 5626955 -112235672 + MIR SINE MIR 17 148 -60 357 364 137 25 chr9 5626993 5627431 -112235196 + L2 LINE L2 2564 3055 -217 365 371 0 0 chr9 5628350 5628466 -112234161 + L2 LINE L2 3137 3252 -20 714 173 173 43 chr9 5628510 5628695 -112233932 - MER3 DNA MER1_type 0 209 1 356 270 162 14 chr9 5628697 5628874 -112233753 - MIR SINE MIR -48 214 16 185 143 57 0 chr9 5629073 5629108 -112233519 - MER5C DNA MER1_type 0 324 288 * 278 224 90 0 chr9 5629106 5629173 -112233454 - MER5C DNA MER1_type -249 75 3 3229 102 7 7 chr9 5629584 5630027 -112232600 + L1PB3 LINE L1 5712 6154 0 1989 151 16 6 chr9 5631113 5631430 -112231197 - MLT2C1 LTR ERVL -77 320 1 243 270 17 70 chr9 5632148 5632263 -112230364 + L2 LINE L2 2893 3001 -271 646 246 33 74 chr9 5632305 5632549 -112230078 - MIR SINE MIR -26 236 3 1872 150 10 14 chr9 5632568 5632861 -112229766 - AluJo SINE Alu -20 292 1 23 0 0 0 chr9 5633114 5633137 -112229490 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr9 5633170 5633207 -112229420 + AT_rich Low_complexity Low_complexity 1 37 0 26 64 0 0 chr9 5633288 5633335 -112229292 + AT_rich Low_complexity Low_complexity 1 47 0 1573 248 28 18 chr9 5633713 5634100 -112228527 + MLT1I LTR MaLR 11 401 -8 313 316 70 51 chr9 5634140 5634453 -112228174 + L1ME4a LINE L1 5803 6121 0 362 299 0 0 chr9 5634657 5634744 -112227883 - MIR SINE MIR -95 113 27 279 298 0 12 chr9 5634938 5635022 -112227605 - MIR3 SINE MIR -35 173 91 228 206 0 130 chr9 5635081 5635173 -112227454 - L2 LINE L2 0 3272 3193 2374 130 12 35 chr9 5635607 5635952 -112226675 + MER1B DNA MER1_type 1 337 0 1375 276 106 15 chr9 5636545 5637019 -112225608 - LTR33 LTR ERVL -4 517 1 212 250 0 18 chr9 5638217 5638273 -112224354 + MIR SINE MIR 102 156 -106 585 258 57 5 chr9 5639157 5639356 -112223271 - MIR SINE MIR -2 260 53 5277 55 40 5 chr9 5639471 5640124 -112222503 + L1PA8 LINE L1 5486 6161 -11 228 365 94 10 chr9 5640174 5640270 -112222357 + MIR SINE MIR 28 131 -131 2209 132 0 0 chr9 5640284 5640588 -112222039 + AluSx SINE Alu 1 304 -8 231 61 0 0 chr9 5640604 5640637 -112221990 + (TA)n Simple_repeat Simple_repeat 1 33 0 36 0 0 0 chr9 5640663 5640699 -112221928 + AT_rich Low_complexity Low_complexity 1 36 0 2202 121 0 19 chr9 5640701 5641015 -112221612 + AluSg SINE Alu 1 308 -2 2341 86 3 10 chr9 5641215 5641517 -112221110 - AluSp SINE Alu -13 300 1 2358 87 3 0 chr9 5641818 5642117 -112220510 + AluSp SINE Alu 1 300 -13 398 238 0 10 chr9 5642168 5642269 -112220358 - L1ME LINE L1 -298 5823 5724 1626 230 49 45 chr9 5642291 5642663 -112219964 + LTR33 LTR ERVL 1 377 -144 279 114 0 0 chr9 5642663 5642707 -112219920 + (CA)n Simple_repeat Simple_repeat 2 45 0 1626 230 49 45 chr9 5642707 5642826 -112219801 + LTR33 LTR ERVL 377 494 -27 373 290 20 0 chr9 5642869 5642969 -112219658 - L1ME LINE L1 -461 5660 5559 263 272 29 48 chr9 5643222 5643325 -112219302 + MIR SINE MIR 104 204 -58 1007 156 0 0 chr9 5643574 5643756 -112218871 - AluJb SINE Alu 0 323 142 2193 119 3 0 chr9 5643834 5644136 -112218491 - AluSp SINE Alu -10 303 1 642 235 138 113 chr9 5644596 5645030 -112217597 - MLT1H LTR MaLR 0 549 105 422 324 113 35 chr9 5645442 5645813 -112216814 - ERVL LTR ERVL -5067 697 298 415 249 79 42 chr9 5646259 5646424 -112216203 - LTR50 LTR ERVL -617 178 8 2341 71 0 0 chr9 5646653 5646984 -112215643 - AluY SINE Alu 0 333 3 682 301 160 33 chr9 5647023 5647449 -112215178 - MLT1K LTR MaLR -19 569 90 589 204 84 36 chr9 5647808 5647899 -112214728 - MIR SINE MIR -27 235 150 2560 107 120 5 chr9 5647899 5648283 -112214344 - MSTA LTR MaLR 0 428 1 589 204 84 36 chr9 5648283 5648358 -112214269 - MIR SINE MIR -112 150 61 266 346 58 6 chr9 5648430 5648586 -112214041 + L2 LINE L2 3146 3309 -4 4514 70 23 0 chr9 5649049 5649610 -112213017 + L1PA11 LINE L1 5596 6169 -5 1872 103 20 0 chr9 5651120 5651373 -112211254 + AluSx SINE Alu 34 291 -21 363 262 8 40 chr9 5651389 5651515 -112211112 - MIR SINE MIR -50 212 91 1996 164 0 0 chr9 5651552 5651851 -112210776 + AluJb SINE Alu 1 299 -13 225 283 61 30 chr9 5651886 5651985 -112210642 + L3 LINE CR1 398 499 -1078 828 297 183 73 chr9 5652043 5652161 -112210466 + L3 LINE CR1 647 751 -826 1980 162 0 0 chr9 5652161 5652463 -112210164 + AluJb SINE Alu 8 309 -3 828 297 183 73 chr9 5652463 5652690 -112209937 + L3 LINE CR1 751 952 -625 1931 155 3 3 chr9 5652690 5652987 -112209640 + AluJb SINE Alu 1 297 -15 828 297 183 73 chr9 5652987 5653476 -112209151 + L3 LINE CR1 952 1574 -3 300 261 136 11 chr9 5653483 5653571 -112209056 + MIR3 SINE MIR 99 197 -11 451 270 117 7 chr9 5655112 5655249 -112207378 + MIR SINE MIR 32 183 -79 2079 138 3 0 chr9 5655294 5655592 -112207035 - AluSx SINE Alu -13 299 1 21 71 0 0 chr9 5655973 5656015 -112206612 + AT_rich Low_complexity Low_complexity 1 42 0 213 59 0 29 chr9 5656051 5656085 -112206542 - L2 LINE L2 0 3272 3240 372 318 68 27 chr9 5656817 5657037 -112205590 - MIR SINE MIR -6 256 28 883 241 117 14 chr9 5657653 5657944 -112204683 - MER5C DNA MER1_type -2 322 2 2426 91 3 0 chr9 5657956 5658263 -112204364 - AluSx SINE Alu -4 308 1 192 152 0 0 chr9 5658366 5658399 -112204228 + T-rich Low_complexity Low_complexity 1 33 0 691 79 0 11 chr9 5658686 5658775 -112203852 - AluJb SINE Alu -194 118 31 220 196 0 39 chr9 5659540 5659591 -112203036 + L2 LINE L2 3262 3310 -3 382 225 200 8 chr9 5660121 5660241 -112202386 - MER5A DNA MER1_type 0 189 47 1016 101 51 6 chr9 5660241 5660399 -112202228 + MSTB LTR MaLR 1 165 -261 1750 193 90 69 chr9 5660407 5660916 -112201711 + MER21B LTR ERV1 299 818 -45 968 145 0 0 chr9 5661008 5661139 -112201488 - FLAM_C SINE Alu -2 131 1 1680 151 33 4 chr9 5661952 5662223 -112200404 + AluJb SINE Alu 1 279 -33 1015 198 68 34 chr9 5663246 5663483 -112199144 - MIR SINE MIR 0 262 18 343 298 89 0 chr9 5664100 5664224 -112198403 - MIR3 SINE MIR -4 204 70 291 274 27 0 chr9 5665067 5665140 -112197487 + L2 LINE L2 3184 3258 -14 231 163 20 20 chr9 5665141 5665190 -112197437 + GA-rich Low_complexity Low_complexity 2 50 0 597 262 115 0 chr9 5665804 5665987 -112196640 - MIR SINE MIR -52 210 7 266 236 167 0 chr9 5666156 5666228 -112196399 + MIR SINE MIR 63 146 -116 589 248 35 0 chr9 5666229 5666374 -112196253 + L1MC4a LINE L1 5674 5823 -1985 2352 137 2 68 chr9 5666374 5666798 -112195829 + MER61E LTR ERV1 54 449 -120 479 221 50 61 chr9 5666807 5666988 -112195639 + L1MC4a LINE L1 5812 5990 -1818 1287 265 38 19 chr9 5667057 5667508 -112195119 - LTR33 LTR ERVL -1 520 1 1755 118 49 26 chr9 5667579 5667885 -112194742 + AluSq SINE Alu 1 313 0 2054 97 18 4 chr9 5668224 5668539 -112194088 - AluSx SINE Alu 0 319 1 359 277 161 19 chr9 5668746 5668901 -112193726 - MER5B DNA MER1_type 0 178 2 356 299 90 57 chr9 5668949 5669193 -112193434 + L2 LINE L2 2839 3090 -182 934 284 56 40 chr9 5669312 5669816 -112192811 + L1ME4a LINE L1 5506 6017 -104 506 311 0 8 chr9 5669919 5670041 -112192586 - MER91A DNA MER1_type 0 196 76 409 303 55 0 chr9 5670069 5670214 -112192413 - L1ME3A LINE L1 -230 5940 5788 2201 283 82 39 chr9 5670849 5672568 -112190059 + L1MEc LINE L1 2141 3785 -2430 1850 167 3 10 chr9 5672568 5672896 -112189731 + AluJb SINE Alu 1 312 0 2201 283 82 39 chr9 5672896 5672907 -112189720 + L1MEc LINE L1 3785 3794 -2421 2151 122 0 0 chr9 5672907 5673220 -112189407 + AluSq SINE Alu 1 313 0 2201 283 82 39 chr9 5673220 5673295 -112189332 + L1MEc LINE L1 3794 3982 -2233 1221 266 81 75 chr9 5673315 5673538 -112189089 + L1MEc LINE L1 4136 4356 -1859 2162 107 7 3 chr9 5673538 5673829 -112188798 + AluSp SINE Alu 1 292 -21 1221 266 81 75 chr9 5673829 5673955 -112188672 + L1MEc LINE L1 4356 4480 -1735 2692 106 19 6 chr9 5673955 5674314 -112188313 + THE1B LTR MaLR 1 364 0 1221 266 81 75 chr9 5674314 5675131 -112187496 + L1MEc LINE L1 4480 5311 -904 558 270 92 25 chr9 5675135 5675331 -112187296 + MER63A DNA MER1_type 2 210 0 784 250 72 51 chr9 5675331 5675577 -112187050 + L1MEc LINE L1 5305 5544 -687 835 191 0 22 chr9 5675577 5675713 -112186914 + FLAM_A SINE Alu 1 133 0 784 250 72 51 chr9 5675713 5675970 -112186657 + L1MEc LINE L1 5544 5817 -414 1119 240 193 14 chr9 5675971 5676388 -112186239 - MLT2F LTR ERVL -3 660 93 258 121 172 35 chr9 5676394 5676452 -112186175 - MIR3 SINE MIR -46 162 97 30 69 0 0 chr9 5677279 5677337 -112185290 + AT_rich Low_complexity Low_complexity 1 58 0 32 0 0 0 chr9 5677497 5677529 -112185098 + AT_rich Low_complexity Low_complexity 1 32 0 381 213 12 0 chr9 5677946 5678026 -112184601 - LTR16A LTR ERVL -5 445 365 1989 89 4 0 chr9 5678245 5678502 -112184125 - L1PB1 LINE L1 -1 6150 5893 264 295 11 32 chr9 5679471 5679566 -112183061 - MIR SINE MIR -2 260 168 205 298 0 0 chr9 5679598 5679645 -112182982 - MIR SINE MIR -196 66 20 1537 249 66 10 chr9 5679761 5680155 -112182472 + LTR16C LTR ERVL 76 491 0 2322 102 0 0 chr9 5680656 5680949 -112181678 - AluSg SINE Alu -17 293 1 1787 120 69 4 chr9 5681134 5681410 -112181217 + AluSx SINE Alu 1 294 -18 2050 116 31 7 chr9 5681860 5682152 -112180475 - AluSx SINE Alu -13 299 1 203 86 0 29 chr9 5682758 5682793 -112179834 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 787 219 125 5 chr9 5683226 5683418 -112179209 + MIR SINE MIR 48 262 0 407 304 28 66 chr9 5683923 5684104 -112178523 - MER5A DNA MER1_type -9 180 7 22 0 0 0 chr9 5684196 5684218 -112178409 + AT_rich Low_complexity Low_complexity 1 22 0 4399 117 26 48 chr9 5684683 5685417 -112177210 + L1MB2 LINE L1 5343 6060 -111 26 50 0 0 chr9 5686010 5686050 -112176577 + AT_rich Low_complexity Low_complexity 1 40 0 6131 133 60 34 chr9 5686099 5686709 -112175918 - Tigger3b DNA MER2_type -1797 1231 639 2363 90 0 0 chr9 5686709 5687010 -112175617 - AluSg SINE Alu -9 301 1 2055 123 3 29 chr9 5687012 5687322 -112175305 - AluSx SINE Alu -10 302 1 6131 133 60 34 chr9 5687322 5687464 -112175163 - Tigger3b DNA MER2_type -2389 639 502 1725 158 10 17 chr9 5687464 5687756 -112174871 - AluJo SINE Alu -14 298 9 6131 133 60 34 chr9 5687756 5688130 -112174497 - Tigger3b DNA MER2_type -2526 502 71 881 145 7 7 chr9 5688236 5688381 -112174246 - Tigger1 DNA MER2_type -185 2233 2089 2350 85 0 0 chr9 5688387 5688682 -112173945 - AluSc SINE Alu -14 295 1 1415 133 4 112 chr9 5688682 5688960 -112173667 - Tigger1 DNA MER2_type -864 1554 1307 9176 142 10 23 chr9 5688997 5689792 -112172835 - Tigger1 DNA MER2_type -921 1497 730 1660 174 27 20 chr9 5689792 5690086 -112172541 - AluJo SINE Alu -14 298 3 9176 142 10 23 chr9 5690086 5690753 -112171874 - Tigger1 DNA MER2_type -1688 730 55 1630 176 35 3 chr9 5690886 5691175 -112171452 - AluJb SINE Alu -14 298 1 2215 126 7 0 chr9 5691336 5691646 -112170981 + AluSx SINE Alu 1 312 0 380 253 55 0 chr9 5691797 5691888 -112170739 - Tigger1 DNA MER2_type -2254 164 69 880 104 0 0 chr9 5691890 5692005 -112170622 - AluSg/x SINE Alu -13 299 185 2367 95 3 0 chr9 5692129 5692434 -112170193 + AluSp SINE Alu 1 306 -7 2132 101 10 3 chr9 5693282 5693578 -112169049 - AluSx SINE Alu -14 298 1 23 68 0 0 chr9 5694524 5694568 -112168059 + GC_rich Low_complexity Low_complexity 1 44 0 237 211 0 0 chr9 5696418 5696475 -112166152 + (TA)n Simple_repeat Simple_repeat 1 57 0 1984 62 0 4 chr9 5697144 5697385 -112165242 + AluSc SINE Alu 61 300 -9 4700 163 49 37 chr9 5699254 5700544 -112162083 - L1MA9 LINE L1 -5 7726 6416 396 104 0 0 chr9 5700553 5700620 -112162007 - L1MA3 LINE L1 -1 6304 6238 339 62 44 239 chr9 5700620 5700682 -112161945 - L1MA2 LINE L1 -196 6108 6076 1599 193 44 0 chr9 5700682 5700956 -112161671 - AluJo SINE Alu -26 286 1 339 62 44 239 chr9 5700956 5701006 -112161621 - L1MA2 LINE L1 -228 6076 6018 11554 153 45 70 chr9 5701010 5701286 -112161341 - L1MA9 LINE L1 -1139 6426 6145 1629 181 40 27 chr9 5701286 5701656 -112160971 + THE1C LTR MaLR 1 375 0 11554 153 45 70 chr9 5701656 5701987 -112160640 - L1MA9 LINE L1 -1420 6145 5807 2249 120 3 0 chr9 5701987 5702295 -112160332 - AluSq SINE Alu -4 309 1 11554 153 45 70 chr9 5702295 5702688 -112159939 - L1MA9 LINE L1 -1758 5807 5406 3294 115 33 4 chr9 5702688 5702728 -112159899 - L1MA2 LINE L1 0 6304 6267 1879 161 0 31 chr9 5702728 5703045 -112159582 - AluJb SINE Alu -5 307 1 3294 115 33 4 chr9 5703045 5703550 -112159077 - L1MA2 LINE L1 -37 6267 5743 11554 153 45 70 chr9 5703550 5704592 -112158035 - L1MA9 LINE L1 -2159 5406 4340 1665 187 38 0 chr9 5704592 5704881 -112157746 - AluJb SINE Alu -12 300 1 11554 153 45 70 chr9 5704881 5706770 -112155857 - L1MA9 LINE L1 -3225 4340 2654 2439 64 3 0 chr9 5706770 5707067 -112155560 - AluY SINE Alu -13 298 1 11554 153 45 70 chr9 5707067 5708389 -112154238 - L1MA9 LINE L1 -4911 2654 1301 287 263 184 11 chr9 5708496 5708686 -112153941 + MER113 DNA MER1_type? 5 227 -294 1224 177 0 32 chr9 5708696 5708916 -112153711 + AluJb SINE Alu 3 215 -97 557 202 0 0 chr9 5709099 5709193 -112153434 + AluJb SINE Alu 198 291 -21 362 275 72 18 chr9 5709234 5709401 -112153226 + MER113 DNA MER1_type? 297 472 -49 30 59 0 0 chr9 5709452 5709503 -112153124 + AT_rich Low_complexity Low_complexity 1 51 0 793 242 57 8 chr9 5709788 5710052 -112152575 - L1ME1 LINE L1 -48 6118 5842 920 196 63 1 chr9 5710059 5710263 -112152364 - L1PB4 LINE L1 -2 6164 5948 1240 228 112 36 chr9 5710263 5710774 -112151853 - L1ME1 LINE L1 -339 5827 5320 964 240 65 0 chr9 5710784 5711013 -112151614 - AluJo SINE Alu -66 246 3 373 153 41 31 chr9 5711014 5711112 -112151515 - L1ME1 LINE L1 -821 5325 5227 * 3469 177 39 49 chr9 5711111 5712008 -112150619 - L1MB3 LINE L1 -65 6820 5934 483 200 62 76 chr9 5712014 5712159 -112150468 + Tigger3(Golem) DNA MER2_type 1 143 -2886 * 1375 169 4 11 chr9 5712155 5712415 -112150212 + Tigger3(Golem) DNA MER2_type 2772 3029 0 2946 267 35 16 chr9 5712415 5713568 -112149059 - L1MB3 LINE L1 -920 5928 4727 1960 142 0 37 chr9 5713568 5713613 -112149014 - AluSx SINE Alu 0 312 267 558 43 0 0 chr9 5713613 5713682 -112148945 + (TGG)n Simple_repeat Simple_repeat 2 70 0 1960 142 0 37 chr9 5713682 5713960 -112148667 - AluSx SINE Alu -45 267 1 2946 267 35 16 chr9 5713960 5714100 -112148527 - L1MB3 LINE L1 -2121 4727 4591 2655 135 41 3 chr9 5714093 5714676 -112147951 - L1M1 LINE L1 -541 5762 5164 * 751 164 8 8 chr9 5714699 5714827 -112147800 + AluJb SINE Alu 172 299 -13 433 230 7 30 chr9 5714829 5714964 -112147663 + L1 LINE L1 2764 2895 -3251 7242 216 55 37 chr9 5714965 5717096 -112145531 - L1MB3 LINE L1 -4679 2170 1 6600 162 35 18 chr9 5717095 5717235 -112145392 - L1M1 LINE L1 -1011 5135 4999 * 2213 113 7 13 chr9 5717235 5717544 -112145083 - AluSx SINE Alu -5 307 1 6600 162 35 18 chr9 5717544 5718804 -112143823 - L1M1 LINE L1 -1147 4999 3711 1599 221 14 45 chr9 5718806 5719262 -112143365 - L1M4 LINE L1 -1194 4952 4512 2233 136 0 0 chr9 5719262 5719572 -112143055 - AluSg SINE Alu 0 310 1 1599 221 14 45 chr9 5719572 5719627 -112143000 - L1M4 LINE L1 -1634 4512 4457 1351 153 5 23 chr9 5719680 5719895 -112142732 - AluJb SINE Alu -16 296 86 2101 130 3 13 chr9 5719908 5720224 -112142403 - AluSq SINE Alu 0 313 1 1759 144 26 52 chr9 5720224 5720529 -112142098 - AluSq SINE Alu -15 298 1 2411 220 58 74 chr9 5720559 5720968 -112141659 - L1M4 LINE L1 -1793 4353 3939 2227 117 3 0 chr9 5720968 5721277 -112141350 - AluSq SINE Alu -3 310 1 2411 220 58 74 chr9 5721277 5721542 -112141085 - L1M4 LINE L1 -2207 3939 3695 2347 82 0 13 chr9 5721542 5721846 -112140781 - AluY SINE Alu -11 300 1 2411 220 58 74 chr9 5721846 5722090 -112140537 - L1M4 LINE L1 -2451 3695 3449 452 359 42 9 chr9 5723061 5723278 -112139349 - MIR SINE MIR -5 257 34 2402 235 62 13 chr9 5723415 5724108 -112138519 + Cheshire DNA MER1_type 1 727 -1693 1202 220 33 3 chr9 5724099 5724399 -112138228 + Cheshire DNA MER1_type 940 1248 -1172 * 783 200 29 44 chr9 5724402 5724794 -112137833 + Cheshire DNA MER1_type 1373 2249 -171 959 206 31 182 chr9 5724804 5725522 -112137105 - L1M4 LINE L1 -1222 4924 4316 * 19874 156 21 10 chr9 5725517 5729804 -112132823 - L1PA11 LINE L1 -5 7607 3272 2202 94 7 17 chr9 5729804 5730101 -112132526 + AluSc SINE Alu 1 294 -15 19874 156 21 10 chr9 5730101 5730663 -112131964 - L1PA11 LINE L1 -4340 3272 2718 1073 143 15 0 chr9 5730669 5730865 -112131762 - L1P LINE L1 -3577 2569 2371 * 2297 205 45 30 chr9 5730861 5731926 -112130701 - L1PA11 LINE L1 -3551 4033 983 1537 222 109 2 chr9 5731927 5732479 -112130148 - L1M4 LINE L1 -1804 4840 4195 647 251 66 29 chr9 5732498 5732719 -112129908 - L1M4 LINE L1 -2713 3931 3689 1457 221 10 0 chr9 5732719 5733008 -112129619 + AluJo SINE Alu 1 292 -20 647 251 66 29 chr9 5733008 5733164 -112129463 - L1M4 LINE L1 -2955 3689 3540 1925 151 7 3 chr9 5733181 5733480 -112129147 - AluJo SINE Alu -12 300 1 624 72 10 21 chr9 5733510 5733607 -112129020 - THE1C-int LTR MaLR -1484 96 1 2549 105 13 8 chr9 5733607 5733980 -112128647 - THE1C LTR MaLR 0 375 1 2079 226 94 23 chr9 5733981 5734867 -112127760 - L1M4 LINE L1 -4833 1709 835 2410 74 0 12 chr9 5734886 5735225 -112127402 - L1PB1 LINE L1 -75 6076 5742 2393 122 129 9 chr9 5735283 5735716 -112126911 - MER31A LTR ERV1 0 485 1 21 0 0 0 chr9 5736121 5736142 -112126485 + AT_rich Low_complexity Low_complexity 1 21 0 2210 135 81 60 chr9 5736348 5736844 -112125783 - LTR8A LTR ERV1 0 727 222 1993 127 0 20 chr9 5736922 5737252 -112125375 - AluSx SINE Alu 0 324 1 413 337 96 38 chr9 5738234 5738632 -112123995 + HAL1 LINE L1 1181 1601 -906 371 233 188 0 chr9 5738896 5739029 -112123598 + L1MC4a LINE L1 5299 5456 -708 354 288 122 25 chr9 5739104 5739212 -112123415 + L1MC4a LINE L1 5574 5670 -2138 210 37 0 0 chr9 5739212 5739239 -112123388 + (TA)n Simple_repeat Simple_repeat 2 28 0 354 288 122 25 chr9 5739239 5739457 -112123170 + L1MC4a LINE L1 5670 5932 -1876 327 308 100 0 chr9 5739815 5739945 -112122682 + L1ME4a LINE L1 5979 6121 0 2964 90 33 11 chr9 5740158 5740612 -112122015 + MER4C LTR ERV1 2 465 0 1762 165 138 37 chr9 5740629 5741115 -112121512 - LTR10A LTR ERV1 -61 548 14 1268 92 61 0 chr9 5741580 5741776 -112120851 + LTR8A LTR ERV1 1 208 -519 771 162 0 0 chr9 5741776 5741893 -112120734 - FLAM_C SINE Alu -26 117 1 739 211 12 19 chr9 5742077 5742238 -112120389 - MIR SINE MIR -29 233 74 2332 230 48 11 chr9 5742406 5743067 -112119560 - L1ME1 LINE L1 -192 6043 5358 993 214 70 0 chr9 5743069 5743354 -112119273 - L1ME1 LINE L1 -1191 5024 4720 30478 43 10 5 chr9 5743529 5746492 -112116135 - L1PA4 LINE L1 -3 6152 3203 2860 7 0 0 chr9 5746492 5746802 -112115825 - AluY SINE Alu -1 310 1 30478 43 10 5 chr9 5746802 5749950 -112112677 - L1PA4 LINE L1 -2952 3203 7 243 0 0 0 chr9 5749951 5749978 -112112649 + (C)n Simple_repeat Simple_repeat 1 27 0 4077 230 138 31 chr9 5749980 5750765 -112111862 - L1ME1 LINE L1 -1508 4707 4007 7838 26 0 0 chr9 5750765 5752466 -112110161 + L1PA2 LINE L1 4453 6154 -1 4077 230 138 31 chr9 5752466 5753375 -112109252 - L1ME1 LINE L1 -2208 4007 2833 373 184 23 23 chr9 5753362 5753449 -112109178 - L1ME1 LINE L1 -4472 1924 1838 * 22 0 0 0 chr9 5753468 5753490 -112109137 + AT_rich Low_complexity Low_complexity 1 22 0 469 258 129 41 chr9 5753515 5753903 -112108724 - L1ME1 LINE L1 -5142 1254 833 * 761 268 39 9 chr9 5753895 5754126 -112108501 - L1ME1 LINE L1 -6066 330 93 2459 68 0 10 chr9 5754717 5755027 -112107600 - AluY SINE Alu -4 307 1 197 116 0 23 chr9 5756608 5756651 -112105976 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 25 31 0 0 chr9 5756665 5756697 -112105930 + AT_rich Low_complexity Low_complexity 1 32 0 331 296 59 30 chr9 5756745 5756914 -112105713 + L1ME4a LINE L1 5743 5916 -205 566 317 95 21 chr9 5757848 5758091 -112104536 + MIR SINE MIR 2 262 0 255 313 104 22 chr9 5758289 5758423 -112104204 + MIR SINE MIR 77 221 -41 735 256 103 0 chr9 5758513 5758716 -112103911 - MIR SINE MIR -38 224 1 450 292 141 48 chr9 5760596 5760908 -112101719 - L2 LINE L2 -42 3271 2931 2283 100 7 0 chr9 5761248 5761547 -112101080 - AluSx SINE Alu -11 301 1 295 65 0 87 chr9 5762381 5762427 -112100200 - L1ME LINE L1 -512 5654 5613 893 281 127 27 chr9 5762430 5763130 -112099497 - L1MEc LINE L1 -5571 825 56 193 267 22 0 chr9 5763465 5763510 -112099117 - L2 LINE L2 -18 3254 3209 197 324 93 86 chr9 5764303 5764442 -112098185 + MIR3 SINE MIR 21 160 -48 1907 177 80 6 chr9 5764823 5765173 -112097454 + MER6A DNA MER2_type 43 418 -187 31 18 0 53 chr9 5766239 5766296 -112096331 + AT_rich Low_complexity Low_complexity 1 54 0 22 70 0 0 chr9 5766491 5766534 -112096093 + AT_rich Low_complexity Low_complexity 1 43 0 1775 123 67 7 chr9 5767005 5767289 -112095338 + AluSx SINE Alu 1 301 -11 1804 98 130 144 chr9 5767955 5768207 -112094420 - MSTA LTR MaLR 0 428 183 1997 110 3 26 chr9 5768207 5768515 -112094112 - AluSx SINE Alu -3 309 9 1804 98 130 144 chr9 5768515 5768692 -112093935 - MSTA LTR MaLR -245 183 5 2123 136 26 6 chr9 5768701 5769046 -112093581 - MSTA-int LTR MaLR -6 1645 1294 9368 210 86 49 chr9 5769053 5769892 -112092735 - L1MB8 LINE L1 -78 6336 5530 1674 186 27 3 chr9 5769892 5770188 -112092439 - AluJo SINE Alu -9 303 1 9368 210 86 49 chr9 5770188 5771855 -112090772 - L1MB8 LINE L1 -884 5530 3927 2013 114 21 4 chr9 5771855 5772135 -112090492 + AluSc SINE Alu 3 287 -22 9368 210 86 49 chr9 5772135 5773332 -112089295 - L1MB8 LINE L1 -2487 3927 2776 246 32 0 0 chr9 5773332 5773363 -112089264 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9368 210 86 49 chr9 5773363 5773647 -112088980 - L1MB8 LINE L1 -3638 2776 2504 270 56 0 0 chr9 5773647 5773683 -112088944 + (TTG)n Simple_repeat Simple_repeat 1 36 0 9368 210 86 49 chr9 5773683 5774632 -112087995 - L1MB8 LINE L1 -3910 2504 1162 670 286 18 23 chr9 5774751 5774922 -112087705 - MLT1I LTR MaLR -191 218 49 423 344 48 11 chr9 5775078 5775267 -112087360 + MIR SINE MIR 50 245 -17 1208 278 115 35 chr9 5776038 5776916 -112085711 + HAL1 LINE L1 586 1533 -974 281 273 61 18 chr9 5776998 5777163 -112085464 - L1MC5 LINE L1 -188 7773 7602 22 35 0 0 chr9 5777231 5777260 -112085367 + AT_rich Low_complexity Low_complexity 1 29 0 6490 40 0 0 chr9 5777260 5778033 -112084594 - L1PA5 LINE L1 -8 6146 5374 1557 39 20 0 chr9 5778032 5778236 -112084391 + L1PA5 LINE L1 5156 5363 -783 * 236 247 41 0 chr9 5778278 5778351 -112084276 + HAL1 LINE L1 2432 2507 0 23 92 0 0 chr9 5779859 5779924 -112082703 + AT_rich Low_complexity Low_complexity 1 65 0 248 241 96 0 chr9 5780291 5780374 -112082253 + L1MC/D LINE L1 5801 5891 -1917 187 272 136 0 chr9 5781046 5781127 -112081500 + MIR3 SINE MIR 89 180 -28 294 73 0 0 chr9 5781459 5781500 -112081127 + (TCCCC)n Simple_repeat Simple_repeat 5 45 0 1499 139 20 90 chr9 5781520 5781821 -112080806 - AluJb SINE Alu -32 280 1 2067 111 14 24 chr9 5782002 5782299 -112080328 + AluSg SINE Alu 1 294 -16 691 164 16 8 chr9 5782524 5782646 -112079981 - FLAM_A SINE Alu -10 123 1 324 275 84 35 chr9 5782697 5782979 -112079648 - L1MEc LINE L1 -4933 1659 1344 3311 105 91 36 chr9 5783113 5783239 -112079388 - LTR24C LTR ERV1 0 635 517 2009 123 27 0 chr9 5783239 5783531 -112079096 + AluSx SINE Alu 1 300 -12 2440 84 3 0 chr9 5783535 5783843 -112078784 + AluSx SINE Alu 1 309 -3 3311 105 91 36 chr9 5783843 5784313 -112078314 - LTR24C LTR ERV1 -120 515 1 21 36 0 0 chr9 5784388 5784416 -112078211 + AT_rich Low_complexity Low_complexity 1 28 0 200 259 61 61 chr9 5784774 5784921 -112077706 + L2 LINE L2 1964 2110 -1204 227 279 76 0 chr9 5784946 5785025 -112077602 - L2 LINE L2 -13 3300 3216 355 308 51 8 chr9 5785103 5785220 -112077407 + L2 LINE L2 3150 3271 -1 878 208 31 16 chr9 5785270 5785462 -112077165 - MER3 DNA MER1_type -8 201 7 812 292 78 25 chr9 5786618 5786932 -112075695 - HAL1 LINE L1 -76 2431 2080 1659 136 65 127 chr9 5786932 5787381 -112075246 - MER61B LTR ERV1 -4 421 1 812 292 78 25 chr9 5787381 5787555 -112075072 - HAL1 LINE L1 -427 2080 1917 2238 107 3 0 chr9 5787556 5787864 -112074763 - AluSp SINE Alu -4 309 1 21 0 0 0 chr9 5787932 5787953 -112074674 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr9 5788025 5788059 -112074568 + (TG)n Simple_repeat Simple_repeat 2 35 0 39832 73 8 3 chr9 5788239 5794352 -112068275 - L1PA5 LINE L1 -8 6146 3 492 259 54 7 chr9 5794353 5794500 -112068127 - HAL1 LINE L1 -585 1922 1769 850 316 103 58 chr9 5794558 5795334 -112067293 - HAL1 LINE L1 -1693 814 4 21 0 0 0 chr9 5795936 5795957 -112066670 + AT_rich Low_complexity Low_complexity 1 21 0 433 215 69 15 chr9 5796051 5796181 -112066446 + L1ME3A LINE L1 5810 5946 -224 793 308 58 29 chr9 5796473 5796954 -112065673 + L2 LINE L2 2753 3313 0 437 289 234 15 chr9 5797383 5797584 -112065043 - MIR SINE MIR -13 249 5 209 356 0 14 chr9 5797680 5797753 -112064874 - L2 LINE L2 -50 3263 3192 286 287 130 9 chr9 5798630 5798738 -112063889 - L2 LINE L2 -2 3311 3191 2196 67 17 17 chr9 5798940 5799239 -112063388 - AluY SINE Alu -12 299 1 401 206 130 54 chr9 5799417 5799695 -112062932 - L1 LINE L1 -2365 3781 3465 286 98 61 0 chr9 5799696 5799778 -112062849 + (TA)n Simple_repeat Simple_repeat 2 88 0 2071 126 10 0 chr9 5799778 5800080 -112062547 - AluSg SINE Alu -5 305 1 279 291 45 8 chr9 5800090 5800224 -112062403 - L1 LINE L1 -2672 3474 3336 326 170 113 70 chr9 5800404 5800555 -112062072 - L1ME3 LINE L1 -287 5875 5733 422 310 55 30 chr9 5800559 5800888 -112061739 - L1MC4 LINE L1 -214 7828 7492 349 302 189 0 chr9 5801467 5801636 -112060991 - L1MC4 LINE L1 -546 7496 7296 888 257 81 40 chr9 5801958 5802328 -112060299 + L1MEc LINE L1 43 427 -5969 * 957 166 90 18 chr9 5802326 5802549 -112060078 + L1MEc LINE L1 996 1234 -5162 21 36 0 0 chr9 5803024 5803052 -112059575 + AT_rich Low_complexity Low_complexity 1 28 0 2242 141 49 33 chr9 5803303 5803728 -112058899 - Tigger2a DNA MER2_type -2 432 1 576 229 70 84 chr9 5803741 5804076 -112058551 - L1ME3A LINE L1 -333 5837 5514 189 0 0 0 chr9 5804222 5804243 -112058384 + (T)n Simple_repeat Simple_repeat 1 21 0 13668 68 15 6 chr9 5804329 5806095 -112056532 - HERVL-A1 LTR ERVL -3872 1782 1 3427 51 13 27 chr9 5806095 5806545 -112056082 - MLT2A1 LTR ERVL 0 444 1 1021 286 113 43 chr9 5806731 5807936 -112054691 - L1MEd LINE L1 -4656 1473 269 230 309 114 65 chr9 5808875 5808998 -112053629 - L2 LINE L2 -6 3307 3179 1102 145 56 23 chr9 5809484 5809698 -112052929 - AluJo SINE Alu -11 301 81 1783 139 100 9 chr9 5810113 5810444 -112052183 - MER46B DNA MER2_type 0 236 1 428 353 42 32 chr9 5811003 5811193 -112051434 - MIR3 SINE MIR -2 206 15 24 0 0 0 chr9 5811891 5811915 -112050712 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr9 5811998 5812022 -112050605 + AT_rich Low_complexity Low_complexity 1 24 0 336 290 48 0 chr9 5812151 5812275 -112050352 + MER103 DNA DNA 34 163 -3 182 216 0 0 chr9 5814438 5814475 -112048152 + MIR3 SINE MIR 172 208 0 517 196 45 15 chr9 5814694 5814827 -112047800 - MIR3 SINE MIR -5 203 67 2500 74 6 3 chr9 5815441 5815753 -112046874 - AluSq SINE Alu 0 313 1 2109 103 4 0 chr9 5817050 5817331 -112045296 - AluSx SINE Alu -30 282 1 2169 113 17 0 chr9 5818111 5818412 -112044215 - AluSq SINE Alu -7 306 1 195 304 54 0 chr9 5819096 5819152 -112043475 - L2 LINE L2 -4 3268 3210 210 118 0 0 chr9 5819690 5819724 -112042903 + (TG)n Simple_repeat Simple_repeat 2 35 0 383 352 93 10 chr9 5819754 5819947 -112042680 - MIR SINE MIR -6 256 48 21 0 0 0 chr9 5820020 5820041 -112042586 + AT_rich Low_complexity Low_complexity 1 21 0 1901 121 10 17 chr9 5820121 5820411 -112042216 + AluSx SINE Alu 1 288 -24 28 0 0 0 chr9 5820488 5820516 -112042111 + AT_rich Low_complexity Low_complexity 1 28 0 1762 148 93 3 chr9 5820940 5821251 -112041376 - MER44D DNA MER2_type 0 609 1 2106 117 0 0 chr9 5821317 5821631 -112040996 + AluSx SINE Alu 1 314 0 217 372 64 11 chr9 5823200 5823294 -112039333 - L2 LINE L2 -4 3268 3170 448 372 202 2 chr9 5823396 5823818 -112038809 - L2 LINE L2 -209 3063 2550 410 250 44 127 chr9 5824145 5824406 -112038221 - L3 LINE CR1 -202 1375 1143 2358 96 0 13 chr9 5824406 5824719 -112037908 - AluSc SINE Alu 0 309 1 410 250 44 127 chr9 5824719 5824773 -112037854 - L3 LINE CR1 -434 1143 1086 306 305 130 37 chr9 5824918 5825164 -112037463 + L1MC4 LINE L1 7381 7649 -393 228 171 0 0 chr9 5825177 5825212 -112037415 - tRNA-Val-GTG tRNA tRNA -39 37 3 565 234 94 61 chr9 5825225 5825588 -112037039 + L1MC5 LINE L1 7551 7925 -36 205 211 0 0 chr9 5825635 5825673 -112036954 + L3 LINE CR1 1081 1118 -459 208 313 116 36 chr9 5825803 5825915 -112036712 + L3 LINE CR1 1384 1504 -73 2427 84 0 7 chr9 5826781 5827090 -112035537 - AluSg SINE Alu -3 307 1 21 36 0 0 chr9 5827177 5827205 -112035422 + AT_rich Low_complexity Low_complexity 1 28 0 282 296 112 18 chr9 5827225 5827394 -112035233 + L2 LINE L2 2356 2540 -774 206 218 18 36 chr9 5828062 5828117 -112034510 + L2 LINE L2 3242 3295 -18 380 300 140 0 chr9 5830756 5830906 -112031721 + MIR SINE MIR 86 256 -6 1993 134 3 0 chr9 5831733 5832017 -112030610 - AluSx SINE Alu -27 285 1 4593 111 22 4 chr9 5832030 5832745 -112029882 - L1PB1 LINE L1 -2 6149 5422 203 226 0 19 chr9 5833200 5833253 -112029374 + MIR SINE MIR 210 261 -1 2358 84 3 0 chr9 5833267 5833563 -112029064 - AluSp SINE Alu -16 297 1 745 253 107 9 chr9 5833576 5833801 -112028826 - MIR SINE MIR -14 248 2 1734 157 7 20 chr9 5833925 5834218 -112028409 + AluJo SINE Alu 6 294 -18 1334 142 6 120 chr9 5836164 5836523 -112026104 + Cheshire DNA MER1_type 2103 2420 0 2158 206 113 20 chr9 5836744 5837401 -112025226 - L1MB1 LINE L1 -28 6161 5444 1203 221 124 53 chr9 5837433 5838053 -112024574 - L1MC5 LINE L1 -52 7909 7246 34 0 0 0 chr9 5838851 5838885 -112023742 + AT_rich Low_complexity Low_complexity 1 34 0 319 356 27 20 chr9 5839188 5839337 -112023290 + MIR3 SINE MIR 38 187 -21 25 0 0 0 chr9 5842336 5842361 -112020266 + AT_rich Low_complexity Low_complexity 1 25 0 629 197 164 20 chr9 5842606 5842966 -112019661 - L1MB7 LINE L1 -217 5967 5188 3671 206 154 29 chr9 5843175 5844376 -112018251 - L1MB7 LINE L1 -944 5202 3834 1639 200 7 0 chr9 5844376 5844666 -112017961 - AluJb SINE Alu -20 292 1 3671 206 154 29 chr9 5844666 5844723 -112017904 - L1MB7 LINE L1 -2312 3834 3786 11981 122 31 128 chr9 5844883 5847728 -112014899 + L1PA7 LINE L1 12 2579 -3567 8225 70 15 4 chr9 5847720 5849636 -112012991 + L1PA7 LINE L1 4212 6150 -4 * 229 308 162 0 chr9 5853462 5853579 -112009048 + MIR SINE MIR 20 155 -107 419 293 74 36 chr9 5854732 5855207 -112007420 + HAL1b LINE L1 153 645 -703 437 202 48 0 chr9 5855231 5855315 -112007312 - AluJb SINE Alu -22 290 203 226 171 0 0 chr9 5855342 5855383 -112007244 - Alu SINE Alu -33 269 229 1379 186 27 4 chr9 5855391 5855654 -112006973 - AluJo SINE Alu -43 269 1 829 98 0 0 chr9 5855846 5855958 -112006669 - AluSg/x SINE Alu -2 310 199 498 329 69 23 chr9 5856005 5856514 -112006113 + L1MDa LINE L1 2417 2953 -3587 582 176 30 30 chr9 5856533 5856664 -112005963 + L1ME2 LINE L1 6021 6151 -13 216 67 0 0 chr9 5856848 5856878 -112005749 + (GA)n Simple_repeat Simple_repeat 2 31 0 1740 174 46 17 chr9 5856883 5857234 -112005393 - MLT2D LTR ERVL -53 361 1 262 312 136 30 chr9 5857441 5857640 -112004987 - L2 LINE L2 -8 3305 3086 518 198 236 0 chr9 5858384 5858566 -112004061 + L1MCa LINE L1 2099 2323 -4103 * 7872 211 48 26 chr9 5858557 5861174 -112001453 + L1MC2 LINE L1 1840 4540 -1886 2362 95 7 0 chr9 5861174 5861480 -112001147 + AluSg SINE Alu 1 308 -2 7872 211 48 26 chr9 5861480 5862050 -112000577 + L1MC2 LINE L1 4540 5096 -1330 2431 169 122 19 chr9 5862038 5862724 -111999903 + L1MC2 LINE L1 5849 6610 -14 * 1507 151 77 49 chr9 5862724 5863009 -111999618 - AluJo SINE Alu -19 293 1 2431 169 122 19 chr9 5863009 5863021 -111999606 + L1MC2 LINE L1 6610 6619 -5 2454 84 0 0 chr9 5863044 5863343 -111999284 + AluSg SINE Alu 1 299 -11 2347 80 3 0 chr9 5863893 5864192 -111998435 - AluSp SINE Alu -13 300 1 717 243 109 0 chr9 5865230 5865432 -111997195 + MER58A DNA MER1_type 1 224 0 2208 116 0 3 chr9 5866069 5866370 -111996257 + AluSx SINE Alu 1 300 -12 2094 137 0 3 chr9 5868062 5868361 -111994266 - AluSx SINE Alu -13 299 2 769 119 0 0 chr9 5868602 5868738 -111993889 + AluSg/x SINE Alu 176 311 0 1785 161 0 39 chr9 5872105 5872416 -111990211 - AluJb SINE Alu -13 299 1 2177 128 0 0 chr9 5873140 5873444 -111989183 + AluSx SINE Alu 1 304 -8 735 148 17 9 chr9 5873682 5873797 -111988830 - FLAM_C SINE Alu -25 118 3 1696 137 76 4 chr9 5874413 5874695 -111987932 - AluJb SINE Alu 0 301 1 2378 48 10 0 chr9 5874706 5874996 -111987631 - AluY SINE Alu -18 293 1 517 265 53 20 chr9 5875229 5875380 -111987247 - L2 LINE L2 0 3313 3158 25 0 0 0 chr9 5876632 5876657 -111985970 + AT_rich Low_complexity Low_complexity 1 25 0 198 171 0 0 chr9 5877008 5877049 -111985578 + A-rich Low_complexity Low_complexity 1 41 0 296 304 78 48 chr9 5877159 5877389 -111985238 + L2 LINE L2 1739 1975 -1339 273 280 160 10 chr9 5877352 5877452 -111985175 - L2 LINE L2 -3 3269 3155 * 247 246 90 0 chr9 5879061 5879129 -111983498 - L1ME LINE L1 -213 5908 5848 1397 140 35 0 chr9 5879129 5879357 -111983270 - MER46A DNA MER2_type 0 236 1 247 246 90 0 chr9 5879357 5879410 -111983217 - L1ME LINE L1 -273 5848 5776 23 33 0 0 chr9 5879423 5879453 -111983174 + AT_rich Low_complexity Low_complexity 1 30 0 226 240 13 0 chr9 5879526 5879601 -111983026 + (TA)n Simple_repeat Simple_repeat 1 76 0 599 290 34 65 chr9 5879712 5880036 -111982591 + MLT1I LTR MaLR 93 406 -3 1881 132 44 14 chr9 5880137 5880432 -111982195 + AluSx SINE Alu 1 304 -8 302 234 0 0 chr9 5880457 5880534 -111982093 + L1MCc LINE L1 1386 1462 -4961 301 273 47 53 chr9 5880555 5880705 -111981922 + L1MCc LINE L1 1675 1823 -5108 288 306 16 15 chr9 5880732 5880885 -111981742 + L1MCc LINE L1 1816 2069 -4862 1763 219 91 34 chr9 5880907 5881532 -111981095 + L1MC4 LINE L1 6785 7445 -597 23 78 0 0 chr9 5881590 5881641 -111980986 + AT_rich Low_complexity Low_complexity 1 51 0 332 258 126 0 chr9 5881858 5882025 -111980602 + L1MC4 LINE L1 7634 7821 -221 413 218 78 62 chr9 5882042 5882221 -111980406 - L1M4 LINE L1 -2243 3903 3722 646 235 143 0 chr9 5882242 5882459 -111980168 + L1ME4a LINE L1 5585 5832 -338 268 328 9 69 chr9 5882459 5882575 -111980052 - MIR SINE MIR -130 132 24 2335 90 0 0 chr9 5882575 5882874 -111979753 - AluY SINE Alu -12 299 1 2385 72 0 7 chr9 5882874 5883166 -111979461 - AluSx SINE Alu -22 290 1 376 221 127 70 chr9 5883538 5883696 -111978931 - L2 LINE L2 -1317 1997 1831 622 179 19 0 chr9 5883744 5883850 -111978777 + FRAM SINE Alu 53 160 -16 565 265 99 0 chr9 5883856 5884037 -111978590 - L2 LINE L2 -1502 1812 1614 1882 179 10 0 chr9 5884110 5884417 -111978210 + AluJo SINE Alu 1 310 -2 374 288 167 1 chr9 5884441 5884620 -111978007 - L1MC/D LINE L1 -460 5661 5459 2220 189 42 14 chr9 5884681 5884956 -111977671 + L1MB8 LINE L1 5577 5874 -304 2490 126 22 38 chr9 5884956 5885408 -111977219 + MER65A LTR ERV1 1 445 0 2220 189 42 14 chr9 5885408 5885629 -111976998 + L1MB8 LINE L1 5874 6087 -91 2141 110 3 0 chr9 5885694 5885985 -111976642 + AluSx SINE Alu 1 292 -20 262 238 10 50 chr9 5886043 5886144 -111976483 + L1ME4a LINE L1 5936 6032 -89 1825 172 7 0 chr9 5887647 5887943 -111974684 + AluJb SINE Alu 1 298 -14 1153 29 0 7 chr9 5888484 5888624 -111974003 + MER85 DNA T2_type 1 139 0 1692 169 37 10 chr9 5888678 5888974 -111973653 + AluJb SINE Alu 1 304 -8 1001 237 47 0 chr9 5889163 5889395 -111973232 + MIR SINE MIR 12 254 -8 811 137 0 0 chr9 5889967 5890084 -111972543 + AluJo/FLAM SINE Alu 1 117 -185 283 159 111 0 chr9 5890084 5890147 -111972480 - AluSp/q SINE Alu -2 301 232 575 232 103 13 chr9 5890925 5891149 -111971478 + L1ME4a LINE L1 5625 5868 -253 1614 197 13 7 chr9 5891158 5891467 -111971160 + AluJo SINE Alu 1 311 -1 228 297 45 45 chr9 5892172 5892283 -111970344 + MIR3 SINE MIR 6 116 -92 695 297 25 8 chr9 5892396 5892487 -111970140 - MIR SINE MIR -21 241 153 234 0 0 0 chr9 5892487 5892513 -111970114 + (CAT)n Simple_repeat Simple_repeat 2 27 0 695 297 25 8 chr9 5892513 5892657 -111969970 - MIR SINE MIR -109 153 2 1735 172 39 4 chr9 5893074 5893353 -111969274 - AluJb SINE Alu -23 289 1 341 247 0 0 chr9 5893369 5893450 -111969177 - MIR SINE MIR -108 154 74 237 269 100 41 chr9 5894242 5894380 -111968247 - L1ME4a LINE L1 -11 6110 5982 194 62 31 0 chr9 5894380 5894412 -111968215 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 2255 91 3 19 chr9 5894419 5894726 -111967901 - AluSx SINE Alu -10 302 1 2306 63 0 7 chr9 5894735 5895052 -111967575 - AluY SINE Alu 0 315 1 237 269 100 41 chr9 5895052 5895214 -111967413 - L1ME4a LINE L1 -151 5970 5772 305 215 28 65 chr9 5896047 5896154 -111966473 + L1P5 LINE L1 5366 5468 -686 724 195 16 0 chr9 5897742 5897870 -111964757 - FLAM_A SINE Alu -3 130 1 25 0 0 0 chr9 5898007 5898032 -111964595 + AT_rich Low_complexity Low_complexity 1 25 0 387 239 46 15 chr9 5898084 5898214 -111964413 + L1ME4a LINE L1 5119 5252 -894 1339 155 76 55 chr9 5898412 5898703 -111963924 + AluSx SINE Alu 3 299 -13 552 280 100 47 chr9 5898750 5898845 -111963782 + L1ME4a LINE L1 5518 5607 -514 1771 158 47 10 chr9 5898845 5899143 -111963484 + AluJo SINE Alu 1 309 -3 552 280 100 47 chr9 5899143 5899408 -111963219 + L1ME4a LINE L1 5607 5897 -224 890 100 21 14 chr9 5899912 5900052 -111962575 + AluSg/x SINE Alu 170 310 -2 1715 211 88 25 chr9 5900091 5900622 -111962005 + L1MC2 LINE L1 4252 4816 -1330 * 2657 178 151 16 chr9 5900610 5901299 -111961328 + L1MC2 LINE L1 5569 6336 -8 1476 151 79 50 chr9 5901302 5901581 -111961046 - AluJo SINE Alu -25 287 1 2262 102 3 0 chr9 5901616 5901910 -111960717 + AluSg SINE Alu 1 295 -15 183 42 0 0 chr9 5901913 5901937 -111960690 + (TAAAAA)n Simple_repeat Simple_repeat 4 27 0 1833 202 161 2 chr9 5902418 5902854 -111959773 - MLT1D LTR MaLR 0 505 1 394 294 16 8 chr9 5902864 5902990 -111959637 + MIR SINE MIR 53 179 -83 2445 79 0 0 chr9 5903013 5903318 -111959309 - AluY SINE Alu 0 311 7 409 246 0 101 chr9 5903796 5903934 -111958693 - MIR3 SINE MIR -2 206 83 2183 121 3 3 chr9 5903965 5904263 -111958364 + AluSx SINE Alu 1 298 -14 1578 101 0 0 chr9 5904265 5904463 -111958164 + AluSq SINE Alu 1 198 -115 383 127 0 16 chr9 5904464 5904527 -111958100 + AluSq SINE Alu 240 301 -1 374 193 48 0 chr9 5904528 5904611 -111958016 + L1MCa LINE L1 1578 1664 -4762 * 5849 167 49 66 chr9 5904608 5905937 -111956690 + L1MCa LINE L1 17 1322 -5104 1174 150 9 44 chr9 5905937 5906163 -111956464 + AluSx SINE Alu 1 218 -94 1829 151 21 3 chr9 5907583 5907868 -111954759 + AluSx SINE Alu 1 290 -22 532 220 83 64 chr9 5908298 5908516 -111954111 + MER34 LTR ERV1 295 516 -26 601 268 56 6 chr9 5908531 5908710 -111953917 + MER5A DNA MER1_type 1 188 -1 1685 171 7 52 chr9 5909919 5910228 -111952399 + AluJo SINE Alu 1 295 -17 1892 148 0 33 chr9 5910234 5910519 -111952108 + AluJo SINE Alu 1 277 -35 186 71 0 0 chr9 5910519 5910547 -111952080 + (CATA)n Simple_repeat Simple_repeat 2 29 0 1892 148 0 33 chr9 5910547 5910564 -111952063 + AluJo SINE Alu 277 293 -19 216 0 0 0 chr9 5910824 5910848 -111951779 + (A)n Simple_repeat Simple_repeat 1 24 0 450 0 0 0 chr9 5911345 5911395 -111951232 + (CA)n Simple_repeat Simple_repeat 2 51 0 1052 216 65 8 chr9 5911475 5911720 -111950907 - MSTD LTR MaLR 0 396 138 937 157 187 57 chr9 5911723 5911953 -111950674 + AluJo SINE Alu 40 299 -13 23 0 0 0 chr9 5912356 5912379 -111950248 + AT_rich Low_complexity Low_complexity 1 23 0 1669 159 0 34 chr9 5912896 5913192 -111949435 - AluJo SINE Alu 0 312 27 21 36 0 0 chr9 5913231 5913259 -111949368 + AT_rich Low_complexity Low_complexity 1 28 0 2359 103 3 3 chr9 5913812 5914123 -111948504 - AluSx SINE Alu -1 311 1 1420 194 7 4 chr9 5914123 5914385 -111948242 - L1MB5 LINE L1 -111 6063 5798 22 0 0 0 chr9 5914394 5914416 -111948211 + AT_rich Low_complexity Low_complexity 1 22 0 216 314 29 0 chr9 5914898 5914968 -111947659 - MIR SINE MIR -111 151 80 382 265 43 8 chr9 5915873 5915990 -111946637 + L2 LINE L2 3188 3308 -5 716 208 136 61 chr9 5916452 5916746 -111945881 + L1MC5 LINE L1 7621 7936 -25 1222 106 116 10 chr9 5917757 5917964 -111944663 + MER30 DNA MER1_type 1 229 -1 517 92 23 2 chr9 5918080 5918298 -111944329 + AluY SINE Alu 1 262 -49 1346 90 22 0 chr9 5918300 5918478 -111944149 + AluY SINE Alu 100 281 -30 231 114 0 0 chr9 5918478 5918513 -111944114 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 667 191 38 23 chr9 5918523 5918654 -111943973 + AluJo SINE Alu 2 134 -178 2728 175 41 15 chr9 5918766 5919308 -111943319 + MER34B LTR ERV1 10 565 0 1561 134 119 32 chr9 5919462 5919739 -111942888 + AluSx SINE Alu 1 301 -11 419 205 139 0 chr9 5919991 5920142 -111942485 - MIR SINE MIR -2 260 89 203 368 0 0 chr9 5920267 5920335 -111942292 + L3 LINE CR1 1502 1569 -8 22 0 0 0 chr9 5920399 5920421 -111942206 + AT_rich Low_complexity Low_complexity 1 22 0 1218 64 146 0 chr9 5920630 5920801 -111941826 - MER30 DNA MER1_type -34 196 1 186 103 0 0 chr9 5921419 5921448 -111941179 + (CCG)n Simple_repeat Simple_repeat 3 31 0 184 244 47 58 chr9 5921849 5921935 -111940692 - MIR SINE MIR -54 208 124 266 324 29 15 chr9 5921935 5922071 -111940556 - MIR SINE MIR 0 262 125 748 315 91 37 chr9 5922379 5922863 -111939764 + L2 LINE L2 2758 3271 -1 275 247 0 108 chr9 5922928 5923021 -111939606 + L2 LINE L2 3155 3237 -35 426 85 0 0 chr9 5923032 5923091 -111939536 + (TG)n Simple_repeat Simple_repeat 2 60 0 242 56 28 0 chr9 5923283 5923319 -111939308 + (TAGA)n Simple_repeat Simple_repeat 1 37 0 * 432 0 0 0 chr9 5923318 5923366 -111939261 + (TG)n Simple_repeat Simple_repeat 1 48 0 670 267 88 44 chr9 5923570 5923866 -111938761 - L2 LINE L2 -9 3304 2996 254 355 41 8 chr9 5923979 5924100 -111938527 - L2 LINE L2 -10 3262 3138 197 33 33 0 chr9 5924857 5924887 -111937740 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 216 339 125 16 chr9 5924984 5925176 -111937451 - MIR SINE MIR -29 233 21 250 287 9 43 chr9 5925389 5925504 -111937123 - MIR SINE MIR -72 190 80 315 278 70 17 chr9 5925595 5925710 -111936917 + MER117 DNA MER1_type 75 195 -2 228 171 0 0 chr9 5925830 5925871 -111936756 - L2 LINE L2 -19 3253 3213 1573 172 62 28 chr9 5926059 5926349 -111936278 + AluJo SINE Alu 1 300 -12 181 339 68 0 chr9 5926420 5926479 -111936148 + L2 LINE L2 3157 3219 -53 1735 137 69 7 chr9 5926730 5927036 -111935591 + MER65A LTR ERV1 1 325 -120 3251 32 0 0 chr9 5927036 5927500 -111935127 + L1PA5 LINE L1 5576 6153 -1 790 114 38 15 chr9 5927507 5927639 -111934988 + MER65A LTR ERV1 309 443 -2 1785 166 6 25 chr9 5927783 5928097 -111934530 - AluJo SINE Alu 0 312 5 237 151 94 19 chr9 5928179 5928232 -111934395 + LTR67 LTR ERVL 501 557 0 190 250 125 73 chr9 5928284 5928380 -111934247 - MIR SINE MIR -109 153 53 2239 89 24 7 chr9 5929711 5930002 -111932625 - AluSp SINE Alu -17 296 1 512 187 93 22 chr9 5930002 5930141 -111932486 - MIR SINE MIR -60 202 54 459 252 107 39 chr9 5930734 5930940 -111931687 - MIR SINE MIR -24 238 19 1988 134 0 0 chr9 5931306 5931581 -111931046 + AluSx SINE Alu 1 275 -37 335 304 51 22 chr9 5932111 5932249 -111930378 + L2 LINE L2 2921 3062 -251 187 143 0 0 chr9 5932423 5932451 -111930176 - L3 LINE CR1 -27 1550 1523 9065 108 14 9 chr9 5932626 5933834 -111928793 + HSMAR1 DNA Mariner 1 1218 -69 2371 86 0 3 chr9 5933834 5934126 -111928501 + AluSc SINE Alu 1 291 -18 9065 108 14 9 chr9 5934126 5934197 -111928430 + HSMAR1 DNA Mariner 1218 1287 0 581 159 0 28 chr9 5934700 5934807 -111927820 + U13 snRNA snRNA 1 104 0 590 97 0 174 chr9 5934817 5934972 -111927655 + MER53 DNA DNA 43 170 -19 524 62 0 0 chr9 5935109 5935174 -111927453 - HSMAR1 DNA Mariner 0 1287 1223 305 271 225 7 chr9 5938294 5938445 -111924182 - MLT1J LTR MaLR -158 353 170 353 275 169 7 chr9 5938479 5938621 -111924006 - MIR SINE MIR -90 172 8 853 247 155 43 chr9 5938825 5939453 -111923174 - LTR50 LTR ERVL -8 787 3 22 0 0 0 chr9 5939934 5939956 -111922671 + AT_rich Low_complexity Low_complexity 1 22 0 432 326 17 6 chr9 5940156 5940334 -111922293 - MER5A DNA MER1_type -1 188 9 191 254 113 14 chr9 5940591 5940662 -111921965 + MIR3 SINE MIR 6 83 -125 435 286 119 5 chr9 5940685 5940870 -111921757 + MIR SINE MIR 56 261 -1 251 337 11 0 chr9 5940890 5940982 -111921645 + MIR3 SINE MIR 108 200 -8 492 283 73 34 chr9 5941491 5941724 -111920903 + MIR SINE MIR 21 262 0 1961 167 32 47 chr9 5942412 5942609 -111920018 - MSTD LTR MaLR 0 396 207 1571 127 69 33 chr9 5942609 5942885 -111919742 - AluJb SINE Alu -15 297 12 1961 167 32 47 chr9 5942885 5943089 -111919538 - MSTD LTR MaLR -189 207 1 318 247 55 0 chr9 5944313 5944386 -111918241 + L2 LINE L2 3173 3249 -23 30 27 0 0 chr9 5944915 5944952 -111917675 + AT_rich Low_complexity Low_complexity 1 37 0 6188 180 45 91 chr9 5945715 5946066 -111916561 - L1MCa LINE L1 -1939 4487 4122 2067 144 0 10 chr9 5946066 5946372 -111916255 - AluJb SINE Alu -9 303 1 6188 180 45 91 chr9 5946372 5947000 -111915627 - L1MCa LINE L1 -2304 4122 3467 1558 154 0 126 chr9 5947000 5947357 -111915270 - AluJo SINE Alu 0 312 1 6188 180 45 91 chr9 5947357 5948414 -111914213 - L1MCa LINE L1 -2959 3467 2363 2230 112 0 3 chr9 5948414 5948709 -111913918 - AluSx SINE Alu -18 294 1 6188 180 45 91 chr9 5948709 5949025 -111913602 - L1MCa LINE L1 -4063 2363 2034 2080 110 28 14 chr9 5949025 5949315 -111913312 - AluSx SINE Alu -18 294 1 2321 104 0 0 chr9 5949324 5949623 -111913004 - AluY SINE Alu -12 299 1 6188 180 45 91 chr9 5949623 5949767 -111912860 - L1MCa LINE L1 -4178 2248 2099 1531 166 55 7 chr9 5949767 5950056 -111912571 + MER49 LTR ERV1 1 303 -620 417 132 60 24 chr9 5950030 5950139 -111912488 + MER4E LTR ERV1 62 284 -588 * 1664 211 23 8 chr9 5950138 5950489 -111912138 + MER4D LTR ERV1 548 903 0 1701 99 136 60 chr9 5950490 5950621 -111912006 - L1MCa LINE L1 -4325 2101 1981 1208 217 83 4 chr9 5950621 5950898 -111911729 + AluJo SINE Alu 2 300 -2 1701 99 136 60 chr9 5950898 5951118 -111911509 - L1MCa LINE L1 -4445 1981 1723 492 258 108 11 chr9 5951162 5951348 -111911279 - MIR SINE MIR -10 252 49 454 121 55 22 chr9 5951636 5951727 -111910900 + L1MB3 LINE L1 6088 6181 -2 1117 177 77 39 chr9 5951952 5952221 -111910406 + MER33 DNA MER1_type 1 285 -2300 2253 114 0 0 chr9 5952221 5952527 -111910100 + AluSq SINE Alu 1 306 -7 1117 177 77 39 chr9 5952527 5952568 -111910059 + MER33 DNA MER1_type 285 323 -1 951 211 32 0 chr9 5952577 5952762 -111909865 + MIR SINE MIR 1 191 -71 2409 76 3 0 chr9 5953817 5954108 -111908519 - AluSp SINE Alu -21 292 1 1074 240 137 36 chr9 5954384 5954801 -111907826 + MER113 DNA MER1_type? 21 479 -42 5549 154 32 38 chr9 5955469 5956078 -111906549 - L1 LINE L1 -866 5280 4680 2250 108 10 0 chr9 5956078 5956385 -111906242 - AluSx SINE Alu -2 310 1 5549 154 32 38 chr9 5956385 5956948 -111905679 - L1 LINE L1 -1466 4680 4115 2669 55 0 0 chr9 5958962 5959273 -111903354 - AluY SINE Alu 0 311 1 397 253 101 0 chr9 5959874 5959973 -111902654 - MIR SINE MIR -18 244 136 206 301 24 36 chr9 5960176 5960259 -111902368 + L2 LINE L2 2988 3069 -203 318 206 0 0 chr9 5961026 5961094 -111901533 + (TA)n Simple_repeat Simple_repeat 1 68 0 23 68 0 0 chr9 5961105 5961149 -111901478 + AT_rich Low_complexity Low_complexity 1 44 0 181 355 151 17 chr9 5961852 5962024 -111900603 - L2 LINE L2 -344 2970 2776 181 268 18 54 chr9 5962025 5962081 -111900546 - L2 LINE L2 -489 2825 2772 2050 101 3 62 chr9 5962102 5962410 -111900217 + AluSx SINE Alu 1 290 -22 1065 127 42 0 chr9 5962988 5963154 -111899473 + AluJb SINE Alu 5 177 -135 257 119 0 85 chr9 5963204 5963263 -111899364 + MADE1 DNA Mariner 27 80 0 677 149 74 0 chr9 5963263 5963384 -111899243 + AluSg/x SINE Alu 171 300 -12 22 35 0 0 chr9 5963783 5963812 -111898815 + AT_rich Low_complexity Low_complexity 1 29 0 369 0 0 0 chr9 5964094 5964135 -111898492 + (CA)n Simple_repeat Simple_repeat 2 42 0 1142 171 33 19 chr9 5968839 5969049 -111893578 - AluJo SINE Alu -16 296 84 2289 115 0 0 chr9 5969627 5969939 -111892688 + AluSx SINE Alu 1 312 0 2138 107 0 0 chr9 5970494 5970766 -111891861 - AluSg SINE Alu -38 272 1 1274 153 5 5 chr9 5970870 5971072 -111891555 - AluJb SINE Alu -24 288 87 2187 78 0 0 chr9 5971077 5971347 -111891280 - AluY SINE Alu -7 304 35 263 182 61 15 chr9 5971394 5971460 -111891167 + MIR SINE MIR 97 165 -97 246 274 44 71 chr9 5971560 5971673 -111890954 + L3b LINE CR1 1390 1499 -84 4739 252 99 23 chr9 5971673 5973501 -111889126 + L2 LINE L2 1326 3311 -2 21 36 0 0 chr9 5973935 5973963 -111888664 + AT_rich Low_complexity Low_complexity 1 28 0 416 314 92 59 chr9 5974246 5974485 -111888142 - MIR SINE MIR -2 260 14 245 133 67 0 chr9 5974678 5974723 -111887904 - L1MB8 LINE L1 0 6178 6131 225 0 0 0 chr9 5974920 5974945 -111887682 + (TA)n Simple_repeat Simple_repeat 2 26 0 1725 167 0 13 chr9 5976944 5977249 -111885378 - MER2 DNA MER2_type -44 301 1 29 47 0 0 chr9 5977445 5977488 -111885139 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr9 5977688 5977709 -111884918 + AT_rich Low_complexity Low_complexity 1 21 0 2013 147 0 22 chr9 5978904 5979216 -111883411 - AluSx SINE Alu -7 305 1 266 132 0 0 chr9 5979290 5979328 -111883299 - tRNA-Lys-AAG tRNA tRNA -38 38 1 1717 187 3 0 chr9 5980624 5980918 -111881709 + AluJb SINE Alu 1 295 -17 2096 122 3 7 chr9 5981498 5981794 -111880833 + AluSg SINE Alu 1 295 -15 2199 90 7 3 chr9 5981825 5982115 -111880512 + AluSx SINE Alu 21 311 -1 21 36 0 0 chr9 5982668 5982696 -111879931 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 27 chr9 5982721 5982735 -111879892 + AT_rich Low_complexity Low_complexity 1 14 -22 1653 160 0 28 chr9 5982735 5983017 -111879610 + AluJo SINE Alu 27 300 -12 26 0 0 27 chr9 5983017 5983039 -111879588 + AT_rich Low_complexity Low_complexity 14 36 0 211 369 63 36 chr9 5983072 5983183 -111879444 + L2 LINE L2 3157 3270 -2 23 0 0 0 chr9 5983548 5983571 -111879056 + AT_rich Low_complexity Low_complexity 1 23 0 631 222 108 75 chr9 5984269 5984481 -111878146 - MER20 DNA MER1_type 0 219 1 2133 71 7 68 chr9 5984734 5985043 -111877584 - AluSg SINE Alu -20 290 1 22 35 0 0 chr9 5985442 5985471 -111877156 + AT_rich Low_complexity Low_complexity 1 29 0 265 128 0 0 chr9 5986289 5986336 -111876291 + L1MC2 LINE L1 6289 6335 -9 32 57 0 0 chr9 5986540 5986593 -111876034 + AT_rich Low_complexity Low_complexity 1 53 0 300 65 81 0 chr9 5986950 5987012 -111875615 + (CATAA)n Simple_repeat Simple_repeat 4 70 0 1898 149 3 3 chr9 5987426 5987727 -111874900 - AluJo SINE Alu -11 301 1 22 0 0 0 chr9 5989650 5989672 -111872955 + AT_rich Low_complexity Low_complexity 1 22 0 335 130 159 0 chr9 5990680 5990749 -111871878 + MER116 DNA Mariner 1 80 0 493 236 203 0 chr9 5991745 5991868 -111870759 - MER5A DNA MER1_type -1 188 41 21 57 0 0 chr9 5992104 5992139 -111870488 + AT_rich Low_complexity Low_complexity 1 35 0 193 230 58 69 chr9 5992673 5992760 -111869867 - L3 LINE CR1 -1 1576 1491 22 0 0 0 chr9 5993337 5993359 -111869268 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr9 5993379 5993422 -111869205 + AT_rich Low_complexity Low_complexity 1 43 0 687 136 0 0 chr9 5993817 5993948 -111868679 + AluSc SINE Alu 189 319 0 803 191 56 28 chr9 5994909 5995087 -111867540 - MIR SINE MIR -71 191 9 282 317 10 30 chr9 5995098 5995199 -111867428 + MER5A DNA MER1_type 91 189 0 1850 132 69 36 chr9 5995252 5995585 -111867042 + MER2 DNA MER2_type 1 344 0 378 0 0 0 chr9 5995586 5995628 -111866999 + (CA)n Simple_repeat Simple_repeat 2 43 0 181 160 20 20 chr9 5996474 5996524 -111866103 + CT-rich Low_complexity Low_complexity 2 51 0 1990 103 18 11 chr9 5996551 5996871 -111865756 - AluSp SINE Alu 0 322 1 446 200 40 153 chr9 5996898 5997173 -111865454 + MER112 DNA MER1_type 11 254 -6 213 150 17 33 chr9 5998228 5998288 -111864339 + (TA)n Simple_repeat Simple_repeat 2 60 0 477 279 29 23 chr9 6000015 6000187 -111862440 - MER5A DNA MER1_type 0 189 17 285 234 0 85 chr9 6000428 6000481 -111862146 + L2 LINE L2 3208 3251 -62 959 210 83 5 chr9 6000481 6000686 -111861941 - MER58A DNA MER1_type -3 221 1 285 234 0 85 chr9 6000686 6000726 -111861901 + L2 LINE L2 3251 3293 -20 348 169 28 0 chr9 6001526 6001597 -111861030 - MER116 DNA Mariner -5 75 3 233 227 53 27 chr9 6004197 6004272 -111858355 - L1M3f LINE L1 -5022 306 230 429 325 38 19 chr9 6005062 6005219 -111857408 - L2 LINE L2 -3 3269 3110 659 257 43 104 chr9 6005284 6005507 -111857120 + MLT1J LTR MaLR 1 236 -275 1956 156 3 19 chr9 6005507 6005821 -111856806 + AluJo SINE Alu 1 309 -3 659 257 43 104 chr9 6005821 6005893 -111856734 + MLT1J LTR MaLR 236 311 -200 1973 194 29 52 chr9 6005893 6006409 -111856218 - MLT1D LTR MaLR -1 504 1 659 257 43 104 chr9 6006409 6006555 -111856072 + MLT1J LTR MaLR 311 416 -95 241 300 80 0 chr9 6006638 6006738 -111855889 - L2 LINE L2 -237 3035 2928 1935 123 0 0 chr9 6007087 6007347 -111855280 + AluSx SINE Alu 31 290 -22 594 81 12 0 chr9 6007447 6007533 -111855094 + L1M4 LINE L1 2636 2722 -3424 480 267 105 53 chr9 6007567 6007814 -111854813 + HAL1 LINE L1 1076 1335 -1172 3296 99 12 12 chr9 6007821 6008307 -111854320 + MER41A LTR ERV1 1 486 -68 2325 110 0 0 chr9 6008466 6008774 -111853853 + AluSq SINE Alu 1 308 -5 775 222 53 113 chr9 6010024 6010290 -111852337 + MIR SINE MIR 10 259 -3 254 376 73 18 chr9 6010446 6010555 -111852072 + L2 LINE L2 3108 3222 -50 596 296 42 19 chr9 6010775 6010991 -111851636 - MIR SINE MIR -7 255 35 379 294 95 50 chr9 6011031 6011252 -111851375 - MIR SINE MIR -12 250 20 27 0 0 0 chr9 6011448 6011475 -111851152 + AT_rich Low_complexity Low_complexity 1 27 0 229 152 0 0 chr9 6012148 6012181 -111850446 + Alu SINE Alu 136 168 -135 578 130 10 0 chr9 6012181 6012281 -111850346 + FLAM_A SINE Alu 16 116 -26 708 212 42 94 chr9 6012977 6013189 -111849438 + MIR SINE MIR 59 259 -3 2402 91 0 0 chr9 6013940 6014248 -111848379 + AluSq SINE Alu 1 308 -5 496 250 55 30 chr9 6014438 6014638 -111847989 + L1ME4a LINE L1 5712 5916 -205 23 0 0 0 chr9 6015144 6015167 -111847460 + AT_rich Low_complexity Low_complexity 1 23 0 2054 20 0 0 chr9 6015553 6015806 -111846821 - L1PA2 LINE L1 -2909 3237 2985 17907 30 0 0 chr9 6015806 6018730 -111843897 + L1PA2 LINE L1 3227 6155 0 464 203 133 31 chr9 6018985 6019051 -111843576 + MER103 DNA DNA 26 84 -82 555 253 119 66 chr9 6019051 6019371 -111843256 + MER46C DNA MER2_type 1 337 -1 464 203 133 31 chr9 6019371 6019432 -111843195 + MER103 DNA DNA 84 166 0 21 36 0 0 chr9 6020028 6020056 -111842571 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr9 6020073 6020101 -111842526 + AT_rich Low_complexity Low_complexity 1 28 0 2283 114 0 0 chr9 6020111 6020418 -111842209 - AluSg SINE Alu -3 307 1 2240 102 0 7 chr9 6023202 6023506 -111839121 - AluSx SINE Alu -10 302 1 23 0 0 0 chr9 6023923 6023946 -111838681 + AT_rich Low_complexity Low_complexity 1 23 0 1794 182 76 50 chr9 6024122 6024429 -111838198 + L1M4 LINE L1 5019 5317 -867 2204 125 0 3 chr9 6024429 6024740 -111837887 + AluSq SINE Alu 1 310 -3 1794 182 76 50 chr9 6024740 6025133 -111837494 + L1M4 LINE L1 5317 5749 -435 23 33 0 0 chr9 6025323 6025353 -111837274 + AT_rich Low_complexity Low_complexity 1 30 0 393 321 82 51 chr9 6025439 6026050 -111836577 + L1MEd LINE L1 409 1038 -5167 2270 191 34 0 chr9 6026069 6026487 -111836140 + MSTB1 LTR MaLR 1 432 0 250 284 67 8 chr9 6026487 6026621 -111836006 + HAL1 LINE L1 1504 1645 -862 2134 132 0 0 chr9 6026845 6027133 -111835494 + AluSx SINE Alu 1 288 -24 1744 174 24 0 chr9 6027267 6027565 -111835062 + AluJo SINE Alu 1 305 -7 532 285 68 41 chr9 6027583 6027994 -111834633 + L1MEd LINE L1 1246 1667 -4729 1193 255 66 45 chr9 6028015 6028411 -111834216 + L1MEc LINE L1 38 441 -5955 2181 206 71 36 chr9 6028439 6028814 -111833813 + L1MEc LINE L1 530 937 -5459 2309 106 3 13 chr9 6028814 6029126 -111833501 + AluSq SINE Alu 1 309 -4 2181 206 71 36 chr9 6029126 6029368 -111833259 + L1MEc LINE L1 937 1169 -5227 624 190 83 24 chr9 6029641 6029846 -111832781 + HAL1 LINE L1 2261 2477 -30 195 320 48 39 chr9 6030688 6030791 -111831836 - MIR SINE MIR -64 144 41 2294 70 42 0 chr9 6031226 6031511 -111831116 + AluY SINE Alu 1 297 -14 467 233 40 45 chr9 6032205 6032381 -111830246 - LTR67 LTR ERVL -3 554 380 415 350 0 21 chr9 6032544 6032687 -111829940 - LTR67 LTR ERVL -405 152 13 1852 148 20 10 chr9 6032892 6033195 -111829432 + AluJb SINE Alu 1 306 -6 2135 132 7 0 chr9 6033395 6033705 -111828922 + AluSx SINE Alu 1 312 0 219 69 0 0 chr9 6034585 6034614 -111828013 + (CAA)n Simple_repeat Simple_repeat 2 30 0 357 331 70 6 chr9 6034788 6034945 -111827682 + LTR33 LTR ERVL 90 256 -265 216 290 145 0 chr9 6035149 6035211 -111827416 - L2 LINE L2 -994 2320 2250 548 97 18 26 chr9 6035211 6035324 -111827303 + (TCTA)n Simple_repeat Simple_repeat 2 113 0 310 269 48 87 chr9 6035325 6035533 -111827094 + L1ME3 LINE L1 5668 5867 -295 1080 59 0 0 chr9 6035557 6035692 -111826935 + L1PB1 LINE L1 6010 6144 -7 210 143 0 0 chr9 6035694 6035729 -111826898 + (TATG)n Simple_repeat Simple_repeat 2 36 0 571 243 40 12 chr9 6035837 6036010 -111826617 + L1MC4a LINE L1 36 213 -6183 2283 138 104 3 chr9 6036024 6036408 -111826219 + MSTC LTR MaLR 6 428 0 405 358 55 12 chr9 6036409 6036574 -111826053 + L1MC4a LINE L1 213 384 -6012 273 231 0 0 chr9 6036669 6036721 -111825906 + MER2 DNA MER2_type 294 345 0 615 296 89 25 chr9 6036781 6037176 -111825451 + L1MC4a LINE L1 494 913 -5483 286 190 175 36 chr9 6037188 6037325 -111825302 + L1MC4a LINE L1 974 1129 -5267 1443 240 84 57 chr9 6037335 6037623 -111825004 + L1MC4a LINE L1 1332 1611 -4785 396 0 0 0 chr9 6037623 6037667 -111824960 + (CA)n Simple_repeat Simple_repeat 2 45 0 1443 240 84 57 chr9 6037667 6038165 -111824462 + L1MC4a LINE L1 1611 2139 -4257 509 222 36 30 chr9 6038141 6038308 -111824319 + L1MC4a LINE L1 2415 2582 -3633 * 1939 239 102 21 chr9 6038304 6039164 -111823463 + L1MC4a LINE L1 4365 5349 -866 2352 94 3 0 chr9 6039164 6039473 -111823154 + AluSp SINE Alu 1 310 -3 1939 239 102 21 chr9 6039473 6039495 -111823132 + L1MC4a LINE L1 5349 5368 -847 4763 77 22 2 chr9 6039634 6040274 -111822353 - L1PA10 LINE L1 -9 6159 5507 23 0 0 0 chr9 6040309 6040332 -111822295 + AT_rich Low_complexity Low_complexity 1 23 0 591 253 10 3 chr9 6040638 6040834 -111821793 + MIR SINE MIR 6 262 0 192 255 43 0 chr9 6041449 6041496 -111821131 + MIR SINE MIR 100 148 -60 196 375 0 0 chr9 6041642 6041698 -111820929 + L3 LINE CR1 1521 1576 -1 24 53 0 0 chr9 6041835 6041873 -111820754 + AT_rich Low_complexity Low_complexity 1 38 0 2284 96 3 13 chr9 6042609 6042923 -111819704 + AluSp SINE Alu 1 311 -2 860 169 38 76 chr9 6042923 6043107 -111819520 + AluJb SINE Alu 126 302 -10 1900 125 45 3 chr9 6043328 6043616 -111819011 - AluJb SINE Alu -12 300 1 21 36 0 0 chr9 6044035 6044063 -111818564 + AT_rich Low_complexity Low_complexity 1 28 0 666 318 84 14 chr9 6044429 6044914 -111817713 + L1MC4a LINE L1 5456 5974 -1903 189 0 0 0 chr9 6044968 6044989 -111817638 + (TA)n Simple_repeat Simple_repeat 2 22 0 1017 302 79 23 chr9 6045115 6045228 -111817399 + L2 LINE L2 2600 2705 -608 2154 125 0 7 chr9 6045228 6045533 -111817094 + AluSx SINE Alu 1 303 -9 1017 302 79 23 chr9 6045533 6046082 -111816545 + L2 LINE L2 2705 3299 -14 21 36 0 0 chr9 6046226 6046254 -111816373 + AT_rich Low_complexity Low_complexity 1 28 0 585 131 82 112 chr9 6046679 6046821 -111815806 + Charlie7 DNA MER1_type 1822 1958 -654 2254 102 10 0 chr9 6046821 6047124 -111815503 + AluSx SINE Alu 1 306 -6 585 131 82 112 chr9 6047124 6047187 -111815440 + Charlie7 DNA MER1_type 1958 2021 -591 1492 251 122 9 chr9 6047197 6047656 -111814971 - LTR33 LTR ERVL -10 511 1 613 236 61 8 chr9 6047658 6048155 -111814472 + Charlie7 DNA MER1_type 2020 2612 0 2347 82 3 3 chr9 6048683 6048987 -111813640 - AluSp SINE Alu -9 304 1 242 327 111 7 chr9 6049311 6049464 -111813163 + L2 LINE L2 1792 1960 -1354 292 303 183 6 chr9 6049760 6049935 -111812692 - L2 LINE L2 -914 2400 2195 22 56 0 0 chr9 6049943 6049979 -111812648 + AT_rich Low_complexity Low_complexity 1 36 0 1965 150 0 38 chr9 6050095 6050415 -111812212 - AluSx SINE Alu -1 311 4 260 276 145 41 chr9 6051548 6051693 -111810934 - L2 LINE L2 0 3313 3154 282 320 98 7 chr9 6051811 6051964 -111810663 - L2 LINE L2 -841 2473 2307 23 0 0 0 chr9 6052865 6052888 -111809739 + AT_rich Low_complexity Low_complexity 1 23 0 271 318 88 46 chr9 6053367 6053543 -111809084 + L2 LINE L2 2793 2962 -310 418 261 55 12 chr9 6053814 6053979 -111808648 - L1ME4a LINE L1 -5 6116 5945 202 357 137 15 chr9 6054850 6055304 -111807323 + L2 LINE L2 2430 2938 -376 222 296 84 0 chr9 6055383 6055454 -111807173 + L2 LINE L2 3191 3267 -5 207 186 0 23 chr9 6055993 6056036 -111806591 + L2 LINE L2 3226 3267 -5 1687 166 30 27 chr9 6056475 6056771 -111805856 - AluSq SINE Alu -15 298 2 21 0 0 0 chr9 6056979 6057000 -111805627 + AT_rich Low_complexity Low_complexity 1 21 0 37 39 0 0 chr9 6057538 6057589 -111805038 + AT_rich Low_complexity Low_complexity 1 51 0 384 217 19 47 chr9 6057646 6057752 -111804875 - Charlie7 DNA MER1_type -2507 105 3 268 269 60 0 chr9 6058173 6058240 -111804387 - MIR3 SINE MIR -49 159 89 1993 98 34 0 chr9 6059016 6059311 -111803316 + AluSx SINE Alu 1 305 -7 233 217 22 0 chr9 6059428 6059474 -111803153 + L3 LINE CR1 1524 1570 -7 761 178 55 18 chr9 6059944 6060107 -111802520 - MIR SINE MIR -3 259 91 24 53 0 0 chr9 6061824 6061862 -111800765 + GC_rich Low_complexity Low_complexity 1 38 0 22 89 0 0 chr9 6061915 6061960 -111800667 + GC_rich Low_complexity Low_complexity 1 45 0 206 224 0 20 chr9 6062142 6062191 -111800436 + G-rich Low_complexity Low_complexity 2 49 0 428 168 193 0 chr9 6063717 6063836 -111798791 - MIR SINE MIR 0 262 121 316 271 81 27 chr9 6064129 6064146 -111798481 - L1ME4a LINE L1 -11 6110 6095 2236 105 10 3 chr9 6064146 6064451 -111798176 + AluSq SINE Alu 1 307 -6 316 271 81 27 chr9 6064451 6064654 -111797973 - L1ME4a LINE L1 -26 6095 5878 1980 125 10 3 chr9 6069668 6069963 -111792664 - AluJb SINE Alu -15 297 1 1592 151 69 7 chr9 6070035 6070340 -111792287 + L1MB8 LINE L1 5855 6178 0 213 270 0 16 chr9 6070398 6070461 -111792166 - MER5A DNA MER1_type -1 188 127 226 340 46 46 chr9 6070485 6070638 -111791989 + MIR3 SINE MIR 17 169 -39 2277 99 3 13 chr9 6070698 6071010 -111791617 - AluSc SINE Alu 0 309 1 2289 98 0 0 chr9 6071473 6071760 -111790867 + AluSc SINE Alu 1 287 -22 339 344 38 38 chr9 6071801 6071984 -111790643 + MER5A DNA MER1_type 7 189 0 2354 122 0 0 chr9 6072037 6072349 -111790278 - AluSx SINE Alu 0 312 1 21 0 0 0 chr9 6072423 6072444 -111790183 + AT_rich Low_complexity Low_complexity 1 21 0 553 192 54 42 chr9 6072456 6072630 -111789997 + L1ME LINE L1 5395 5575 -589 2344 80 0 43 chr9 6072634 6072960 -111789667 + AluSx SINE Alu 1 312 0 2466 77 0 0 chr9 6073007 6073306 -111789321 + AluSc SINE Alu 1 299 -10 294 308 27 104 chr9 6073502 6073801 -111788826 - L2 LINE L2 -193 3079 2804 3112 92 11 9 chr9 6073812 6074259 -111788368 + LTR7 LTR ERV1 1 448 -2 6393 130 30 65 chr9 6074261 6075992 -111786635 + HERVH LTR ERV1 1 1797 -5916 1029 199 35 87 chr9 6076851 6077038 -111785589 + L1MC5 LINE L1 6876 7002 -959 1729 165 22 41 chr9 6077038 6077354 -111785273 - AluJo SINE Alu -2 310 1 1029 199 35 87 chr9 6077354 6077575 -111785052 + L1MC5 LINE L1 7002 7233 -728 656 280 213 17 chr9 6077678 6078081 -111784546 + LTR50 LTR ERVL 8 489 -306 517 279 49 11 chr9 6078081 6078264 -111784363 + LTR33A LTR ERVL 332 521 -2 3578 212 74 30 chr9 6078328 6079413 -111783214 - L1ME1 LINE L1 -5 6161 4995 2206 103 0 7 chr9 6079413 6079695 -111782932 + AluSx SINE Alu 2 281 -31 3578 212 74 30 chr9 6079695 6079980 -111782647 - L1ME1 LINE L1 -1171 4995 4724 21 36 0 0 chr9 6080298 6080326 -111782301 + AT_rich Low_complexity Low_complexity 1 28 0 569 248 33 8 chr9 6080740 6080861 -111781766 - L2 LINE L2 0 3313 3190 2239 86 41 0 chr9 6081260 6081550 -111781077 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr9 6081858 6081879 -111780748 + AT_rich Low_complexity Low_complexity 1 21 0 2413 97 3 0 chr9 6081970 6082280 -111780347 + AluSx SINE Alu 2 312 0 1796 88 0 0 chr9 6082291 6082518 -111780109 + AluY SINE Alu 85 311 0 338 305 117 15 chr9 6082904 6083101 -111779526 - L1MC4 LINE L1 -552 7490 7274 344 205 25 57 chr9 6083110 6083232 -111779395 - L1MC4 LINE L1 -827 7215 7098 205 171 0 0 chr9 6083346 6083387 -111779240 + T-rich Low_complexity Low_complexity 3 43 0 320 169 34 0 chr9 6083389 6083448 -111779179 - LTR40a LTR ERVL -2 517 457 250 356 0 0 chr9 6083481 6083540 -111779087 + C-rich Low_complexity Low_complexity 1 59 0 1383 209 72 70 chr9 6083652 6084053 -111778574 - LTR40a LTR ERVL -95 424 23 867 286 133 29 chr9 6084107 6084484 -111778143 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6084630 6084778 -111777849 + L1M4 LINE L1 3792 3943 -2203 373 256 171 18 chr9 6084923 6085087 -111777540 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6085101 6085224 -111777403 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6085254 6085429 -111777198 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6085586 6085847 -111776780 - AluSq SINE Alu -4 299 1 2376 74 0 36 chr9 6085928 6086237 -111776390 + AluY SINE Alu 1 298 -13 1718 120 32 0 chr9 6086333 6086583 -111776044 - AluSc SINE Alu -16 293 36 921 195 16 16 chr9 6086887 6087072 -111775555 - AluJo SINE Alu -7 305 121 27 49 0 0 chr9 6087408 6087449 -111775178 + AT_rich Low_complexity Low_complexity 1 41 0 2196 113 0 31 chr9 6087660 6087978 -111774649 + AluSx SINE Alu 3 310 -2 7172 187 132 8 chr9 6088104 6089514 -111773113 + L1PA13 LINE L1 1 1585 -5202 5868 107 53 2 chr9 6089517 6090814 -111771813 + L1PA13 LINE L1 4817 6163 0 1042 135 53 6 chr9 6091625 6091795 -111770832 - L1PB3 LINE L1 -1 6869 6692 12613 235 62 65 chr9 6092043 6093450 -111769177 - L1PB3 LINE L1 -164 6706 5296 2104 134 3 3 chr9 6093450 6093757 -111768870 - AluSq SINE Alu -6 307 1 12613 235 62 65 chr9 6093757 6095077 -111767550 - L1PB3 LINE L1 -1574 5296 3973 2006 133 0 44 chr9 6095077 6095394 -111767233 - AluSx SINE Alu -9 303 1 12613 235 62 65 chr9 6095394 6097798 -111764829 - L1PB3 LINE L1 -2897 3973 2682 2193 122 20 0 chr9 6097798 6098102 -111764525 - AluSx SINE Alu -2 310 1 12613 235 62 65 chr9 6098102 6100774 -111761853 - L1PB3 LINE L1 -4188 2682 3 255 384 58 0 chr9 6101254 6101340 -111761287 - MIR SINE MIR -90 118 28 1683 87 4 13 chr9 6101514 6101745 -111760882 + AluSq SINE Alu 44 272 -41 3393 60 2 10 chr9 6101847 6102262 -111760365 + L1PA5 LINE L1 5743 6154 0 379 231 161 0 chr9 6102503 6102633 -111759994 - L1MC5 LINE L1 -48 7913 7763 602 180 9 0 chr9 6103339 6103450 -111759177 - Charlie4 DNA MER1_type -34 1927 1816 391 298 7 64 chr9 6104138 6104279 -111758348 + MLT1I LTR MaLR 22 154 -255 198 167 0 0 chr9 6104281 6104317 -111758310 + CT-rich Low_complexity Low_complexity 2 37 0 728 171 0 0 chr9 6104327 6104432 -111758195 - FLAM_C SINE Alu -21 122 18 739 266 41 18 chr9 6104469 6104691 -111757936 + MLT1I LTR MaLR 184 450 0 315 235 12 12 chr9 6104738 6104819 -111757808 - MIR SINE MIR -110 152 72 180 225 25 0 chr9 6105171 6105211 -111757416 + MER5B DNA MER1_type 13 53 -125 237 311 76 98 chr9 6105421 6105698 -111756929 + L2 LINE L2 2924 3194 -78 21 0 0 0 chr9 6105726 6105747 -111756880 + GC_rich Low_complexity Low_complexity 1 21 0 546 242 95 38 chr9 6106120 6106331 -111756296 - L2 LINE L2 0 3313 3091 180 0 0 0 chr9 6106640 6106660 -111755967 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1101 216 24 111 chr9 6106668 6107039 -111755588 + MSTD LTR MaLR 1 339 -57 514 147 10 10 chr9 6107039 6107141 -111755486 + CT-rich Low_complexity Low_complexity 3 104 0 5204 91 11 14 chr9 6107154 6107850 -111754777 - L1PA13 LINE L1 -14 6149 5456 507 100 0 0 chr9 6107851 6107921 -111754706 + MSTD LTR MaLR 388 457 0 1737 157 0 35 chr9 6108069 6108355 -111754272 - AluJo SINE Alu -36 276 1 745 16 63 0 chr9 6108546 6108651 -111753976 - L1P1 LINE L1 -671 5484 5374 271 0 51 0 chr9 6108990 6109029 -111753598 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 7584 22 0 0 chr9 6109033 6109891 -111752736 - L1PA3 LINE L1 0 6155 5298 * 41614 71 6 2 chr9 6109886 6115254 -111747373 - L1P LINE L1 -756 5390 5 574 267 37 19 chr9 6117292 6117453 -111745174 - MIR SINE MIR -93 169 6 359 262 19 19 chr9 6117731 6117838 -111744789 - MIR SINE MIR -26 236 130 365 280 107 33 chr9 6119113 6119263 -111743364 + LTR16C LTR ERVL 322 482 -9 1318 81 27 27 chr9 6120059 6120244 -111742383 + AluY SINE Alu 1 185 -126 1639 170 3 39 chr9 6120856 6121168 -111741459 + AluJo SINE Alu 1 301 -11 2032 95 4 0 chr9 6121181 6121444 -111741183 - AluSq SINE Alu -6 307 44 1482 208 72 67 chr9 6121681 6122100 -111740527 - LTR40a LTR ERVL -76 443 23 867 286 133 29 chr9 6122154 6122531 -111740096 + LTR33 LTR ERVL 99 514 -7 341 284 54 27 chr9 6122677 6122825 -111739802 + L1M4 LINE L1 3792 3943 -2203 23 68 0 0 chr9 6122877 6122921 -111739706 + AT_rich Low_complexity Low_complexity 1 44 0 373 256 171 18 chr9 6122970 6123134 -111739493 + MER5A DNA MER1_type 1 189 0 898 98 81 0 chr9 6123148 6123271 -111739356 - FLAM_C SINE Alu 0 133 1 310 257 57 74 chr9 6123301 6123476 -111739151 - HAL1 LINE L1 -10 2497 2326 1853 96 146 0 chr9 6123633 6123894 -111738733 - AluSq SINE Alu -4 299 1 2059 105 3 37 chr9 6123975 6124305 -111738322 + AluY SINE Alu 1 320 0 2335 93 3 0 chr9 6124535 6124837 -111737790 + AluY SINE Alu 1 303 -8 235 248 86 68 chr9 6125454 6125517 -111737110 + MER103 DNA DNA 11 78 -88 2224 118 0 0 chr9 6125517 6125821 -111736806 + AluSx SINE Alu 1 304 -8 235 248 86 68 chr9 6125821 6125874 -111736753 + MER103 DNA DNA 78 129 -37 220 313 163 0 chr9 6126212 6126359 -111736268 + L2 LINE L2 1918 2088 -1226 3738 110 12 2 chr9 6126636 6127144 -111735483 + LTR10D LTR ERV1 1 513 0 1616 267 42 56 chr9 6127170 6128226 -111734401 + HERVI LTR ERV1 23 1139 -6646 829 219 16 37 chr9 6128340 6128367 -111734260 - L1P LINE L1 -2652 3494 3468 2061 86 23 36 chr9 6128367 6128670 -111733957 + AluY SINE Alu 1 299 -12 829 219 16 37 chr9 6128670 6128884 -111733743 - L1P LINE L1 -2678 3468 3258 345 202 218 24 chr9 6128885 6129009 -111733618 + LTR50 LTR ERVL 586 733 -62 216 266 16 0 chr9 6129055 6129119 -111733508 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2273 112 3 0 chr9 6129150 6129454 -111733173 - AluSc SINE Alu -4 305 1 1139 213 46 59 chr9 6129651 6129956 -111732671 - LTR8A LTR ERV1 0 727 427 316 271 81 27 chr9 6130995 6131198 -111731429 + L1ME4a LINE L1 5878 6095 -26 2236 105 10 3 chr9 6131198 6131503 -111731124 - AluSq SINE Alu -6 307 1 316 271 81 27 chr9 6131503 6131520 -111731107 + L1ME4a LINE L1 6095 6110 -11 428 168 193 0 chr9 6131813 6131932 -111730695 + MIR SINE MIR 121 262 0 502 319 101 4 chr9 6133582 6133839 -111728788 + MLT1J LTR MaLR 228 509 -2 1347 265 23 8 chr9 6133854 6134205 -111728422 - LTR16A LTR ERVL -6 444 89 437 295 36 36 chr9 6134852 6135018 -111727609 + LTR67 LTR ERVL 23 188 -369 534 241 13 57 chr9 6135161 6135319 -111727308 + LTR67 LTR ERVL 393 543 -14 1040 165 41 28 chr9 6135670 6135888 -111726739 - AluJo SINE Alu -5 307 87 1971 138 13 7 chr9 6135985 6136289 -111726338 - AluJb SINE Alu -6 306 1 308 253 48 0 chr9 6136791 6136874 -111725753 + MLT1H LTR MaLR 1 87 -462 1169 191 9 23 chr9 6136881 6137101 -111725526 - MER20 DNA MER1_type 0 219 3 331 183 73 12 chr9 6137401 6137483 -111725144 + MLT1H LTR MaLR 463 549 0 1080 201 44 97 chr9 6137709 6138122 -111724505 - L1M4 LINE L1 -832 5314 4924 258 269 106 14 chr9 6138213 6138354 -111724273 + L1ME4a LINE L1 5967 6120 -1 2120 131 0 0 chr9 6138361 6138667 -111723960 - AluSq SINE Alu 0 306 1 4104 126 76 35 chr9 6139472 6140221 -111722406 + LTR1 LTR ERV1 6 785 0 1317 177 45 78 chr9 6140472 6140818 -111721809 + LTR37A LTR ERV1 18 349 -77 1739 167 38 0 chr9 6140818 6141106 -111721521 + AluJo SINE Alu 1 299 -13 1317 177 45 78 chr9 6141106 6141182 -111721445 + LTR37A LTR ERV1 349 426 0 430 186 150 35 chr9 6142063 6142176 -111720451 - FLAM_C SINE Alu -7 126 1 1949 108 7 51 chr9 6142471 6142803 -111719824 + AluSg SINE Alu 1 319 0 2283 103 3 0 chr9 6143033 6143335 -111719292 + AluY SINE Alu 1 303 -8 235 248 86 68 chr9 6143952 6144015 -111718612 + MER103 DNA DNA 11 78 -88 2224 118 0 0 chr9 6144015 6144319 -111718308 + AluSx SINE Alu 1 304 -8 235 248 86 68 chr9 6144319 6144372 -111718255 + MER103 DNA DNA 78 129 -37 220 313 163 0 chr9 6144710 6144857 -111717770 + L2 LINE L2 1918 2088 -1226 3742 110 12 2 chr9 6145134 6145642 -111716985 + LTR10D LTR ERV1 1 513 0 1630 264 56 55 chr9 6145668 6146740 -111715887 + HERVI LTR ERV1 23 1171 -6614 35450 178 10 19 chr9 6147070 6153758 -111708869 + HERVI LTR ERV1 1144 7769 -16 3774 106 10 8 chr9 6153774 6154286 -111708341 + LTR10D LTR ERV1 1 513 0 534 306 124 6 chr9 6154291 6154605 -111708022 - HAL1 LINE L1 -431 2076 1726 360 344 51 28 chr9 6154607 6154822 -111707805 + MLT1J LTR MaLR 1 220 -291 221 125 0 42 chr9 6155179 6155227 -111707400 + (TAAAAA)n Simple_repeat Simple_repeat 1 46 0 679 325 94 22 chr9 6156049 6156452 -111706175 + L2 LINE L2 2181 2612 -702 385 286 0 0 chr9 6156511 6156609 -111706018 + L1MC4a LINE L1 5746 5843 -1965 2296 166 21 23 chr9 6156692 6157137 -111705490 + MSTB1 LTR MaLR 1 396 0 622 241 28 47 chr9 6157290 6157502 -111705125 - L1MC5 LINE L1 -48 7913 7706 926 223 9 38 chr9 6157503 6157714 -111704913 + MER3 DNA MER1_type 5 209 0 795 209 12 31 chr9 6157748 6157933 -111704694 + AluJo SINE Alu 127 312 0 400 209 12 0 chr9 6158032 6158118 -111704509 - AluJb SINE Alu -5 307 221 1107 140 12 6 chr9 6158118 6158289 -111704338 - AluJb SINE Alu -124 188 17 4724 128 44 33 chr9 6158649 6159462 -111703165 - L1PA16 LINE L1 -5 6161 5340 7241 215 35 11 chr9 6159463 6160673 -111701954 - L1 LINE L1 -959 5187 3925 2236 139 39 28 chr9 6160673 6161033 -111701594 + THE1B LTR MaLR 1 364 0 7241 215 35 11 chr9 6161033 6161459 -111701168 - L1 LINE L1 -2221 3925 3511 2148 55 0 8 chr9 6161470 6161758 -111700869 - AluY SINE Alu 0 312 27 2168 100 4 4 chr9 6161862 6162166 -111700461 - AluSq SINE Alu 0 308 5 2181 84 28 0 chr9 6162170 6162455 -111700172 + L1PB1 LINE L1 5858 6150 -1 7985 166 135 15 chr9 6162627 6164194 -111698433 - MER52A LTR ERV1 0 1755 1 431 367 25 17 chr9 6165225 6165462 -111697165 - MIR SINE MIR 0 262 24 1905 190 36 8 chr9 6165821 6166267 -111696360 - MER89 LTR ERV1 0 559 1 424 149 7 41 chr9 6166853 6166989 -111695638 - MER53 DNA DNA 0 189 3 210 167 0 0 chr9 6167147 6167183 -111695444 + MER91 DNA MER1_type 13 48 -92 422 114 0 29 chr9 6168114 6168184 -111694443 - L1PB4 LINE L1 -2 6154 6087 581 309 82 0 chr9 6169488 6169708 -111692919 + MIR SINE MIR 23 260 -2 1492 163 63 11 chr9 6169762 6170032 -111692595 + AluJo SINE Alu 3 286 -26 2403 90 0 6 chr9 6170034 6170345 -111692282 + AluY SINE Alu 1 309 -2 24 53 0 0 chr9 6170346 6170384 -111692243 + AT_rich Low_complexity Low_complexity 1 38 0 1187 197 165 76 chr9 6170823 6171358 -111691269 + LTR50 LTR ERVL 11 702 -93 192 40 0 0 chr9 6171358 6171383 -111691244 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 1187 197 165 76 chr9 6171383 6171478 -111691149 + LTR50 LTR ERVL 702 787 -8 1158 218 40 0 chr9 6171763 6171988 -111690639 - L1PB4 LINE L1 -2 6154 5921 432 271 160 27 chr9 6172239 6172427 -111690200 - MIR SINE MIR -2 260 48 27 0 0 0 chr9 6172459 6172486 -111690141 + AT_rich Low_complexity Low_complexity 1 27 0 3475 76 32 5 chr9 6172602 6172642 -111689985 - MLT2A1 LTR ERVL 0 444 407 225 0 0 0 chr9 6172642 6172667 -111689960 + (TA)n Simple_repeat Simple_repeat 2 26 0 3475 76 32 5 chr9 6172667 6173058 -111689569 - MLT2A1 LTR ERVL -37 407 1 41354 75 10 5 chr9 6173059 6178797 -111683830 - ERVL-A1 LTR ERVL -8 5756 33 1665 40 0 5 chr9 6178798 6178998 -111683629 - MLT2A1 LTR ERVL -244 200 2 972 179 19 61 chr9 6180125 6180337 -111682290 + LTR8A LTR ERV1 34 236 -491 1173 167 13 107 chr9 6180342 6180641 -111681986 - LTR27 LTR ERV1 -2 634 364 261 132 0 0 chr9 6180723 6180761 -111681866 - MER61B LTR ERV1 -286 139 102 * 925 174 11 17 chr9 6180738 6180916 -111681711 - LTR28 LTR ERV1 -842 178 2 1051 140 22 22 chr9 6180917 6181095 -111681532 + LTR8A LTR ERV1 233 410 -317 239 167 0 0 chr9 6181324 6181360 -111681267 - L1PB4 LINE L1 -297 5854 5819 2470 84 0 3 chr9 6181360 6181670 -111680957 - AluY SINE Alu -2 309 1 2331 131 8 11 chr9 6181696 6182055 -111680572 - THE1B LTR MaLR -1 363 6 1807 256 43 4 chr9 6182079 6182572 -111680055 - L1M4 LINE L1 -1018 5128 4617 2155 123 0 0 chr9 6182583 6182875 -111679752 - AluSg SINE Alu -18 292 1 337 282 21 18 chr9 6183255 6183381 -111679246 - MIR SINE MIR -36 172 45 1927 132 40 0 chr9 6184415 6184711 -111677916 + AluSx SINE Alu 5 312 0 1519 171 38 3 chr9 6184894 6185186 -111677441 - L1MB7 LINE L1 0 6184 5883 233 195 12 24 chr9 6185491 6185573 -111677054 + (TAA)n Simple_repeat Simple_repeat 1 81 0 320 267 23 0 chr9 6186189 6186275 -111676352 - MER69 DNA AcHobo -1727 799 712 255 216 165 31 chr9 6186284 6186381 -111676246 - MLT1F1 LTR MaLR -284 283 174 27 0 0 0 chr9 6187686 6187713 -111674914 + AT_rich Low_complexity Low_complexity 1 27 0 725 191 34 121 chr9 6187723 6187925 -111674702 + L1MC5 LINE L1 7452 7601 -360 1813 154 21 7 chr9 6187925 6188211 -111674416 + AluJo SINE Alu 1 290 -22 725 191 34 121 chr9 6188211 6188422 -111674205 + L1MC5 LINE L1 7601 7829 -132 195 42 0 0 chr9 6190314 6190338 -111672289 + (TTCA)n Simple_repeat Simple_repeat 4 27 0 4289 158 48 32 chr9 6190347 6190753 -111671874 + L1MB4 LINE L1 5174 5572 -608 2225 100 0 3 chr9 6190753 6191044 -111671583 + AluSc SINE Alu 1 290 -19 4289 158 48 32 chr9 6191044 6191371 -111671256 + L1MB4 LINE L1 5572 5927 -253 2617 173 7 9 chr9 6191371 6191798 -111670829 - MSTB LTR MaLR 0 426 1 4289 158 48 32 chr9 6191798 6191982 -111670645 + L1MB4 LINE L1 5927 6107 -73 493 325 75 9 chr9 6192059 6192271 -111670356 - MIR SINE MIR -31 231 6 25 0 0 0 chr9 6192691 6192716 -111669911 + AT_rich Low_complexity Low_complexity 1 25 0 240 69 0 0 chr9 6193573 6193602 -111669025 + U2 snRNA snRNA 1 29 -159 1187 252 35 22 chr9 6193630 6194031 -111668596 + L1MC5 LINE L1 6968 7373 -588 442 299 25 49 chr9 6194083 6194287 -111668340 + L1ME3A LINE L1 5963 6161 -9 2766 174 72 30 chr9 6194621 6194633 -111667994 + L1MB5 LINE L1 5566 5576 -598 1681 118 4 12 chr9 6194633 6194878 -111667749 + AluSx SINE Alu 38 280 -32 297 0 0 0 chr9 6194879 6194912 -111667715 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2766 174 72 30 chr9 6194912 6195465 -111667162 + L1MB5 LINE L1 5575 6157 -17 5066 170 6 20 chr9 6195485 6196459 -111666168 + L1P LINE L1 3037 3996 -2150 590 284 83 31 chr9 6196788 6197017 -111665610 - MIR SINE MIR -21 241 1 196 247 62 49 chr9 6197017 6197050 -111665577 - MER5A DNA MER1_type -148 41 8 682 226 104 28 chr9 6197744 6197956 -111664671 + MLT1H LTR MaLR 3 230 -319 375 182 28 114 chr9 6197997 6198161 -111664466 + MLT1H LTR MaLR 381 536 0 249 33 0 0 chr9 6199217 6199247 -111663380 + (TG)n Simple_repeat Simple_repeat 1 30 0 1739 149 3 11 chr9 6199258 6199540 -111663087 - AluJb SINE Alu -32 280 1 189 345 9 52 chr9 6200567 6200683 -111661944 + L3 LINE CR1 1458 1568 -9 28076 35 19 1 chr9 6200841 6206844 -111655783 + L1PA2 LINE L1 4 6155 0 668 239 25 50 chr9 6207110 6207311 -111655316 - MIR SINE MIR -2 260 65 203 152 0 0 chr9 6208536 6208569 -111654058 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1963 130 52 30 chr9 6208670 6209000 -111653627 - MER1B DNA MER1_type 0 337 1 283 100 0 0 chr9 6209075 6209115 -111653512 - MLT1I LTR MaLR -272 137 98 311 273 109 0 chr9 6209124 6209307 -111653320 + L1MEc LINE L1 1599 1801 -4595 25 0 0 0 chr9 6209389 6209414 -111653213 + AT_rich Low_complexity Low_complexity 1 25 0 336 188 44 125 chr9 6209457 6209617 -111653010 + L1M4 LINE L1 4540 4686 -1460 22 70 0 0 chr9 6209842 6209885 -111652742 + AT_rich Low_complexity Low_complexity 1 43 0 473 183 83 33 chr9 6209923 6210043 -111652584 - L1MC5 LINE L1 -48 7913 7788 8986 152 29 4 chr9 6210043 6211505 -111651122 - ERVL-B1 LTR ERVL -2210 3554 2057 3205 172 66 53 chr9 6211532 6212566 -111650061 - MER21A LTR ERV1 -19 912 15 10640 187 43 18 chr9 6212601 6213355 -111649272 - ERVL-B1 LTR ERVL -3711 2053 1320 1202 210 78 49 chr9 6213355 6213740 -111648887 + MSTD LTR MaLR 1 396 0 10640 187 43 18 chr9 6213740 6214369 -111648258 - ERVL-B1 LTR ERVL -4444 1320 709 2435 131 31 5 chr9 6214369 6214757 -111647870 + MER48 LTR ERV1 1 398 0 10640 187 43 18 chr9 6214757 6215373 -111647254 - ERVL-B1 LTR ERVL -5055 709 2 1855 181 151 54 chr9 6215380 6215844 -111646783 - MLT2B1 LTR ERVL -6 514 6 1036 103 19 0 chr9 6215844 6216000 -111646627 + L1MB8 LINE L1 5737 5895 -283 322 305 59 0 chr9 6216232 6216350 -111646277 + L2 LINE L2 1879 2003 -1311 265 344 84 7 chr9 6216383 6216537 -111646090 - MLT1L LTR MaLR -67 548 383 11442 190 30 36 chr9 6216596 6218248 -111644379 + L1MB3 LINE L1 266 1926 -4456 2779 112 57 69 chr9 6218248 6218773 -111643854 - LTR44 LTR ERV1 0 519 1 2124 138 0 0 chr9 6218780 6219091 -111643536 - AluSx SINE Alu -1 311 1 11442 190 30 36 chr9 6219091 6219716 -111642911 + L1MB3 LINE L1 1932 2559 -3823 1922 149 7 3 chr9 6219716 6220005 -111642622 - AluJb SINE Alu -20 292 3 11442 190 30 36 chr9 6220005 6220727 -111641900 + L1MB3 LINE L1 2559 3284 -3098 1981 165 7 0 chr9 6220727 6221036 -111641591 + AluJb SINE Alu 1 311 -1 11442 190 30 36 chr9 6221036 6223220 -111639407 + L1MB3 LINE L1 3284 5424 -958 1720 164 0 34 chr9 6223357 6223506 -111639121 - AluJo SINE Alu -30 282 146 243 0 0 0 chr9 6223506 6223533 -111639094 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 1720 164 0 34 chr9 6223533 6223675 -111638952 - AluJo SINE Alu -166 146 1 4527 165 31 39 chr9 6224144 6225106 -111637521 + L1MB3 LINE L1 5424 6374 -45 2271 98 0 10 chr9 6225106 6225411 -111637216 + AluSx SINE Alu 1 302 -10 4527 165 31 39 chr9 6225411 6225455 -111637172 + L1MB3 LINE L1 6374 6417 -2 679 264 41 86 chr9 6225627 6226207 -111636420 - L1MEd LINE L1 -4871 1248 695 180 152 0 0 chr9 6226290 6226323 -111636304 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 375 336 69 83 chr9 6226736 6227231 -111635396 + L2 LINE L2 2589 3073 -199 2178 123 3 7 chr9 6227231 6227540 -111635087 - AluSx SINE Alu -4 308 1 375 336 69 83 chr9 6227540 6227738 -111634889 + L2 LINE L2 3073 3272 0 207 200 0 0 chr9 6228154 6228189 -111634438 + (TG)n Simple_repeat Simple_repeat 2 36 0 299 211 0 0 chr9 6228401 6228472 -111634155 - L1ME LINE L1 -303 5818 5748 837 240 159 0 chr9 6228476 6228684 -111633943 - MIR SINE MIR -21 241 1 631 280 13 0 chr9 6228775 6228925 -111633702 + MIR SINE MIR 15 166 -96 315 49 0 0 chr9 6229042 6229083 -111633544 + (A)n Simple_repeat Simple_repeat 1 41 0 254 234 106 0 chr9 6229514 6229608 -111633019 - MIR SINE MIR 0 262 159 216 0 0 0 chr9 6229647 6229671 -111632956 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 381 198 242 0 chr9 6229673 6229764 -111632863 - FLAM_A SINE Alu -17 116 4 240 273 26 39 chr9 6229764 6229841 -111632786 - MIR SINE MIR -145 117 42 211 262 0 0 chr9 6229907 6229949 -111632678 - MIR3 SINE MIR -17 191 150 317 213 12 12 chr9 6230345 6230425 -111632202 - MER116 DNA Mariner 0 80 1 1122 164 0 55 chr9 6232048 6232091 -111630536 + AluJo SINE Alu 91 135 -177 2557 43 0 3 chr9 6232091 6232391 -111630236 + AluY SINE Alu 1 299 -12 1122 164 0 55 chr9 6232391 6232566 -111630061 + AluJo SINE Alu 135 297 -15 652 242 0 0 chr9 6232768 6232896 -111629731 + FLAM_A SINE Alu 3 130 -3 236 281 36 36 chr9 6234331 6234470 -111628157 + HAL1b LINE L1 123 261 -1087 408 213 36 169 chr9 6234576 6234801 -111627826 - MLT1L LTR MaLR 0 615 421 351 308 119 6 chr9 6234936 6235095 -111627532 + MLT1J LTR MaLR 2 178 -333 1093 200 60 113 chr9 6235104 6235474 -111627153 + MLT2D LTR ERVL 1 350 -64 239 136 0 85 chr9 6235521 6235580 -111627047 + MLT2D LTR ERVL 464 517 -3 304 232 199 33 chr9 6235671 6235904 -111626723 + MLT1L LTR MaLR 240 509 -2 588 305 86 12 chr9 6235924 6236180 -111626447 - MLT1L LTR MaLR -340 275 1 2616 125 24 5 chr9 6236697 6237114 -111625513 - LTR24C LTR ERV1 -210 425 1 853 332 42 30 chr9 6237312 6237746 -111624881 + L1M3a LINE L1 14 452 -5503 16711 32 1 1 chr9 6238570 6240618 -111622009 + L1P LINE L1 1547 3595 -2551 1034 162 67 46 chr9 6241510 6241579 -111621048 + L1MA8 LINE L1 6002 6068 -223 2500 66 3 0 chr9 6241579 6241881 -111620746 + AluY SINE Alu 1 303 -8 1034 162 67 46 chr9 6241881 6242037 -111620590 + L1MA8 LINE L1 6068 6237 -54 267 31 0 0 chr9 6242037 6242069 -111620558 + (TA)n Simple_repeat Simple_repeat 1 32 0 1034 162 67 46 chr9 6242069 6242126 -111620501 + L1MA8 LINE L1 6237 6291 0 460 356 56 0 chr9 6242510 6242690 -111619937 + L2 LINE L2 2811 3000 -313 1752 48 5 0 chr9 6242704 6242910 -111619717 - AluY SINE Alu -13 298 92 333 322 59 8 chr9 6243032 6243150 -111619477 + MIR3 SINE MIR 10 133 -75 2269 105 7 0 chr9 6243510 6243816 -111618811 + AluSp SINE Alu 1 308 -5 366 183 0 0 chr9 6244003 6244074 -111618553 + (CA)n Simple_repeat Simple_repeat 2 72 0 193 259 65 111 chr9 6244150 6244258 -111618369 + MER5A DNA MER1_type 65 167 -22 285 222 43 103 chr9 6244345 6244462 -111618165 + MIR SINE MIR 71 180 -82 341 204 46 125 chr9 6244672 6244824 -111617803 - MER112 DNA MER1_type -1 259 120 2552 168 95 6 chr9 6244848 6245353 -111617274 - MER44D DNA MER2_type 0 605 1 491 138 38 0 chr9 6245581 6245661 -111616966 + Tigger7 DNA MER2_type 2357 2439 -48 389 365 28 38 chr9 6246132 6246385 -111616242 - MIR SINE MIR -2 260 8 308 281 94 23 chr9 6247511 6247639 -111614988 - MIR SINE MIR -20 242 106 212 267 0 40 chr9 6247851 6247926 -111614701 - L2 LINE L2 -6 3307 3236 * 328 233 165 0 chr9 6247922 6248025 -111614602 + MIR SINE MIR 13 132 -130 1077 90 0 0 chr9 6248135 6248269 -111614358 - AluSq/x SINE Alu -178 134 1 22 0 0 0 chr9 6248392 6248414 -111614213 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr9 6249784 6249826 -111612801 + AT_rich Low_complexity Low_complexity 1 42 0 505 321 65 11 chr9 6249884 6250068 -111612559 + MIR SINE MIR 1 194 -68 1532 145 4 4 chr9 6250662 6250890 -111611737 - AluSx SINE Alu -84 228 1 1585 137 8 16 chr9 6251038 6251293 -111611334 + AluSc SINE Alu 1 253 -56 191 257 119 79 chr9 6253407 6253508 -111609119 - MIR SINE MIR -147 115 11 482 247 100 32 chr9 6253714 6253924 -111608703 - MIR SINE MIR 0 262 38 4085 241 75 21 chr9 6254067 6255692 -111606935 + L1M3f LINE L1 539 2242 -4086 2250 128 88 7 chr9 6255692 6256100 -111606527 + L1MA4 LINE L1 5849 6289 -11 477 255 101 64 chr9 6256258 6256542 -111606085 + L1M3f LINE L1 3255 3527 -2801 1793 167 10 10 chr9 6256542 6256842 -111605785 + AluJo SINE Alu 1 300 -12 236 77 26 0 chr9 6256842 6256881 -111605746 + (TA)n Simple_repeat Simple_repeat 2 41 0 477 255 101 64 chr9 6256881 6257007 -111605620 + L1M3f LINE L1 3526 3672 -2656 800 177 6 55 chr9 6257021 6257202 -111605425 + MLT1D LTR MaLR 17 188 -317 2528 165 19 39 chr9 6257202 6257717 -111604910 + MLT1D LTR MaLR 1 505 0 40618 35 23 1 chr9 6257745 6263765 -111598862 - L1PA3 LINE L1 0 6155 3 475 275 105 18 chr9 6263870 6264204 -111598423 + L1M3f LINE L1 3802 4164 -2164 592 337 102 38 chr9 6264251 6264786 -111597841 - L2 LINE L2 -2 3270 2703 365 242 25 25 chr9 6265044 6265164 -111597463 + LTR33 LTR ERVL 402 521 0 518 276 19 26 chr9 6265174 6265330 -111597297 - L2 LINE L2 -596 2718 2564 1504 173 15 11 chr9 6265338 6265739 -111596888 + MER76 LTR ERV 1 466 -222 358 164 45 0 chr9 6265783 6265850 -111596777 + MER76 LTR ERV 590 659 -29 638 312 41 54 chr9 6265851 6266293 -111596334 - L2 LINE L2 -744 2570 2135 180 250 0 0 chr9 6266426 6266462 -111596165 + L2 LINE L2 3220 3255 -17 322 119 237 0 chr9 6266832 6266891 -111595736 - THE1B LTR MaLR 0 375 303 1027 146 0 0 chr9 6266893 6267074 -111595553 + AluSg/x SINE Alu 136 316 0 219 167 0 0 chr9 6267094 6267136 -111595491 + GA-rich Low_complexity Low_complexity 4 45 0 2098 116 0 0 chr9 6267149 6267451 -111595176 - THE1B LTR MaLR -62 302 1 286 323 222 35 chr9 6267658 6267856 -111594771 + MIR SINE MIR 20 254 -8 1321 174 0 21 chr9 6268646 6268882 -111593745 + AluJo SINE Alu 70 300 -12 202 267 0 0 chr9 6269237 6269282 -111593345 + (CAG)n Simple_repeat Simple_repeat 3 47 0 628 213 90 62 chr9 6269503 6269714 -111592913 + MIR SINE MIR 40 256 -6 1591 151 7 60 chr9 6270102 6270422 -111592205 - AluJb SINE Alu 0 304 1 264 353 88 0 chr9 6270663 6270799 -111591828 - MIR3 SINE MIR -5 203 56 235 286 0 16 chr9 6271137 6271200 -111591427 - MIR SINE MIR -127 81 20 1688 148 20 67 chr9 6271638 6272044 -111590583 - L1MB8 LINE L1 -6 6172 5786 1456 173 24 0 chr9 6272047 6272342 -111590285 - L1MB8 LINE L1 -538 5646 5345 1186 277 54 12 chr9 6272349 6272851 -111589776 - L1M4c LINE L1 -4738 1646 1124 1625 256 113 35 chr9 6272855 6273389 -111589238 + L1ME LINE L1 89 580 -5500 2064 144 3 0 chr9 6273389 6273680 -111588947 + AluSx SINE Alu 1 292 -20 1625 256 113 35 chr9 6273680 6274326 -111588301 + L1ME LINE L1 580 1362 -4718 2833 6 15 3 chr9 6274349 6274677 -111587950 + L1PA3 LINE L1 5824 6155 0 183 42 0 0 chr9 6274745 6274769 -111587858 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 334 215 47 0 chr9 6274777 6274884 -111587743 + L1ME LINE L1 1403 1514 -4566 2495 191 57 78 chr9 6275496 6276202 -111586425 - LTR8 LTR ERV1 0 691 1 1939 135 49 0 chr9 6277395 6277683 -111584944 + AluSx SINE Alu 5 306 -6 283 282 18 0 chr9 6278184 6278294 -111584333 + LTR33 LTR ERVL 4 115 -406 573 238 42 0 chr9 6278707 6278850 -111583777 + MLT1D LTR MaLR 355 503 -2 1629 115 125 16 chr9 6279897 6280202 -111582425 - MER44D DNA MER2_type -1 608 1 3676 162 19 0 chr9 6281384 6282032 -111580595 + L1MB5 LINE L1 5515 6174 0 4356 213 36 30 chr9 6282064 6282452 -111580175 - L1M4 LINE L1 -649 6023 5639 1578 194 40 0 chr9 6282452 6282730 -111579897 + AluJb SINE Alu 9 297 -15 4356 213 36 30 chr9 6282730 6283709 -111578918 - L1M4 LINE L1 -1033 5639 4648 207 0 0 0 chr9 6283709 6283732 -111578895 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4356 213 36 30 chr9 6283732 6283799 -111578828 - L1M4 LINE L1 -2024 4648 4583 29825 94 9 8 chr9 6283803 6289227 -111573400 + L1PA7 LINE L1 1377 7588 -4 203 0 37 0 chr9 6289253 6289280 -111573347 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1346 245 6 14 chr9 6289288 6289635 -111572992 - L1M4 LINE L1 -2046 4598 4255 4432 235 54 43 chr9 6289638 6291634 -111570993 - L1M4 LINE L1 -4656 1990 5 476 343 78 12 chr9 6291659 6291980 -111570647 - L1MEc LINE L1 -3404 2811 2470 1529 188 18 25 chr9 6291991 6292309 -111570318 - AluJo SINE Alu 0 319 4 3041 93 32 5 chr9 6292310 6292742 -111569885 - MLT2A1 LTR ERVL 0 444 1 550 322 70 36 chr9 6292751 6293251 -111569376 - L1MEc LINE L1 -4016 2380 1864 234 0 0 0 chr9 6294153 6294179 -111568448 + (A)n Simple_repeat Simple_repeat 1 26 0 2332 64 0 3 chr9 6294310 6294619 -111568008 + AluY SINE Alu 1 308 0 612 242 80 58 chr9 6294650 6294988 -111567639 + L1MEc LINE L1 2179 2492 -3723 1199 165 5 15 chr9 6296658 6296885 -111565742 - AluJo SINE Alu 0 309 85 1967 127 0 43 chr9 6296997 6297296 -111565331 + AluSq SINE Alu 7 292 -21 3261 136 71 43 chr9 6297423 6298101 -111564526 - LTR8A LTR ERV1 -30 697 1 521 184 31 17 chr9 6299122 6299482 -111563145 + (TA)n Simple_repeat Simple_repeat 1 365 0 421 301 35 60 chr9 6300047 6300246 -111562381 + MIR SINE MIR 2 195 -67 355 240 123 68 chr9 6300315 6300461 -111562166 - MIR SINE MIR -75 187 34 228 67 0 0 chr9 6301279 6301309 -111561318 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1762 178 21 0 chr9 6301311 6301592 -111561035 - AluJb SINE Alu -25 287 1 366 284 24 95 chr9 6303444 6303655 -111558972 - L1ME3A LINE L1 -1 6169 5974 595 280 111 18 chr9 6304256 6304588 -111558039 - MLT1L LTR MaLR 0 615 253 526 195 0 70 chr9 6305939 6306067 -111556560 + MIR SINE MIR 33 151 -57 1143 209 0 30 chr9 6306256 6306486 -111556141 - AluJb SINE Alu -9 303 81 1363 294 71 30 chr9 6306487 6306539 -111556088 - L1MEd LINE L1 -4865 1254 1206 1748 168 0 25 chr9 6306539 6306854 -111555773 - AluJo SINE Alu -5 307 1 1363 294 71 30 chr9 6306854 6307811 -111554816 - L1MEd LINE L1 -4913 1206 274 841 242 11 0 chr9 6308514 6308692 -111553935 + MIR SINE MIR 79 258 -4 717 231 81 0 chr9 6308692 6308865 -111553762 + AluJo SINE Alu 120 306 -6 1800 140 39 3 chr9 6309113 6309399 -111553228 + AluJo SINE Alu 1 296 -16 260 245 0 0 chr9 6309716 6309769 -111552858 - MIR SINE MIR -59 149 97 399 339 133 33 chr9 6310243 6310641 -111551986 - L2 LINE L2 -16 3256 2819 292 311 152 7 chr9 6311399 6311550 -111551077 + MIR SINE MIR 36 208 -54 431 358 33 30 chr9 6311584 6311916 -111550711 + L2 LINE L2 2559 2891 -423 4747 222 93 18 chr9 6312052 6313135 -111549492 - L1M4 LINE L1 -1825 4321 3321 231 88 0 0 chr9 6313135 6313169 -111549458 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 4747 222 93 18 chr9 6313169 6313519 -111549108 - L1M4 LINE L1 -2825 3321 2999 1822 166 0 10 chr9 6313519 6313821 -111548806 - AluSx SINE Alu -13 299 1 4747 222 93 18 chr9 6313821 6314055 -111548572 - L1M4 LINE L1 -3147 2999 2528 1779 161 3 17 chr9 6314294 6314592 -111548035 + AluJb SINE Alu 1 294 -18 457 299 128 9 chr9 6315233 6315444 -111547183 - MIR SINE MIR -7 255 20 222 317 70 75 chr9 6315983 6316169 -111546458 - L2 LINE L2 -995 2319 2135 616 199 93 7 chr9 6316273 6316424 -111546203 - LTR53 LTR ERVL -61 458 295 453 159 0 0 chr9 6316771 6316840 -111545787 - AluJ/FLAM SINE Alu -243 69 1 1182 267 63 13 chr9 6316857 6317400 -111545227 - L1M4 LINE L1 -2400 3746 3177 35 0 0 0 chr9 6317404 6317439 -111545188 + AT_rich Low_complexity Low_complexity 1 35 0 1742 187 52 3 chr9 6317547 6317895 -111544732 + MLT1A1 LTR MaLR 1 365 0 230 121 0 0 chr9 6318136 6318169 -111544458 - L2 LINE L2 -16 3256 3224 309 214 87 19 chr9 6318245 6318348 -111544279 - MLT1J LTR MaLR -33 478 369 334 265 120 56 chr9 6318361 6318459 -111544168 - LTR16A1 LTR ERVL 0 457 367 195 100 0 0 chr9 6318459 6318489 -111544138 + (CAGGG)n Simple_repeat Simple_repeat 1 30 0 334 265 120 56 chr9 6318489 6318624 -111544003 - LTR16A1 LTR ERVL -90 367 209 2105 123 3 7 chr9 6318899 6319192 -111543435 - AluSx SINE Alu -16 296 5 330 234 34 88 chr9 6319235 6319467 -111543160 - MLT1J LTR MaLR -200 311 54 247 275 87 81 chr9 6319562 6319711 -111542916 - MIR SINE MIR -58 150 1 364 99 0 0 chr9 6319746 6319808 -111542819 - MLT2B3 LTR ERVL 0 520 403 234 81 0 0 chr9 6319808 6319845 -111542782 + (TA)n Simple_repeat Simple_repeat 1 37 0 227 104 0 0 chr9 6319852 6319900 -111542727 - LTR66 LTR ERVL -169 441 394 2019 199 17 60 chr9 6319905 6319919 -111542708 - MLT2B3 LTR ERVL -44 500 487 459 0 0 0 chr9 6319919 6319970 -111542657 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2019 199 17 60 chr9 6319970 6320389 -111542238 - MLT2B3 LTR ERVL -57 487 115 1939 154 3 3 chr9 6320389 6320694 -111541933 + AluJb SINE Alu 1 305 -7 2019 199 17 60 chr9 6320694 6320805 -111541822 - MLT2B3 LTR ERVL -429 115 1 1983 138 0 7 chr9 6321160 6321449 -111541178 + AluSg SINE Alu 1 287 -23 1337 87 0 0 chr9 6321701 6321885 -111540742 - L1PA14 LINE L1 0 6161 5978 1725 84 0 24 chr9 6321905 6322156 -111540471 - L1PA14 LINE L1 -291 5870 5626 204 295 103 13 chr9 6322759 6322837 -111539790 - L2 LINE L2 -21 3251 3167 38914 69 4 3 chr9 6322960 6324794 -111537833 + L1PA5 LINE L1 11 1841 -4313 2285 52 41 3 chr9 6324794 6325084 -111537543 - AluY SINE Alu -10 301 1 38914 69 4 3 chr9 6325084 6329383 -111533244 + L1PA5 LINE L1 1841 6152 -2 234 304 29 10 chr9 6331687 6331789 -111530838 + MIR SINE MIR 28 131 -131 425 222 22 0 chr9 6331826 6331916 -111530711 + MLT1H LTR MaLR 458 549 0 322 289 10 10 chr9 6331920 6332024 -111530603 + MIR SINE MIR 159 262 0 533 177 218 7 chr9 6332505 6332652 -111529975 - MER5A DNA MER1_type 0 189 12 637 246 191 24 chr9 6333286 6333627 -111529000 + MLT1J LTR MaLR 107 504 -7 25 0 0 0 chr9 6334050 6334075 -111528552 + AT_rich Low_complexity Low_complexity 1 25 0 331 266 24 32 chr9 6334199 6334323 -111528304 - MER117 DNA MER1_type -69 128 6 1952 154 23 0 chr9 6335350 6335656 -111526971 - AluSq SINE Alu 0 313 1 22 0 0 0 chr9 6335779 6335801 -111526826 + AT_rich Low_complexity Low_complexity 1 22 0 233 237 21 10 chr9 6336558 6336655 -111525972 - L1ME LINE L1 -193 5928 5831 850 213 66 92 chr9 6337031 6337378 -111525249 - MER46C DNA MER2_type 0 338 1 646 258 30 39 chr9 6337516 6337726 -111524901 - MIR SINE MIR -3 259 52 1143 232 77 16 chr9 6338462 6338535 -111524092 - MSTD LTR MaLR 0 396 329 1930 158 6 19 chr9 6338535 6338846 -111523781 + AluJo SINE Alu 1 307 -5 1143 232 77 16 chr9 6338846 6339082 -111523545 - MSTD LTR MaLR -67 329 68 739 62 0 0 chr9 6339082 6339178 -111523449 + AluSc SINE Alu 212 307 -2 432 168 47 0 chr9 6339188 6339277 -111523350 - MSTD LTR MaLR -344 89 1 680 284 48 141 chr9 6340044 6340494 -111522133 + L2 LINE L2 1950 2440 -874 1756 196 17 63 chr9 6340494 6340830 -111521797 - MSTD LTR MaLR -1 395 80 2363 103 0 0 chr9 6340830 6341132 -111521495 - AluSc SINE Alu -7 302 1 1756 196 17 63 chr9 6341132 6341209 -111521418 - MSTD LTR MaLR -316 80 1 680 284 48 141 chr9 6341209 6341321 -111521306 + L2 LINE L2 2440 2561 -753 2473 84 0 3 chr9 6341321 6341632 -111520995 - AluY SINE Alu 0 311 2 680 284 48 141 chr9 6341632 6341991 -111520636 + L2 LINE L2 2561 2786 -528 653 302 21 8 chr9 6342024 6342259 -111520368 - Charlie8 DNA MER1_type -2179 238 1 1452 167 105 0 chr9 6342780 6343074 -111519553 + MER44D DNA MER2_type 9 603 -6 2024 121 11 3 chr9 6343759 6344041 -111518586 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr9 6344045 6344065 -111518562 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 1982 155 39 62 chr9 6344234 6344619 -111518008 + MSTB1 LTR MaLR 3 378 -54 2813 95 87 27 chr9 6344619 6345103 -111517524 + MER75 DNA T2_type 2 514 0 1982 155 39 62 chr9 6345103 6345155 -111517472 + MSTB1 LTR MaLR 378 430 -2 184 287 58 35 chr9 6345176 6345263 -111517364 + L2 LINE L2 3179 3267 -5 5703 124 32 13 chr9 6345903 6346911 -111515716 + Tigger3b DNA MER2_type 7 1033 -198 1912 149 56 20 chr9 6346915 6347305 -111515322 + MER4E LTR ERV1 371 774 -5 268 288 105 13 chr9 6347331 6347484 -111515143 + L1MC4a LINE L1 6415 6581 -1227 * 402 230 178 0 chr9 6347481 6347616 -111515011 + L1MC4 LINE L1 6769 6927 -1115 1239 262 67 80 chr9 6347664 6348317 -111514310 - LTR19C LTR ERV1 0 779 135 279 214 0 0 chr9 6348373 6348443 -111514184 + L1MC4 LINE L1 7154 7223 -819 418 297 110 7 chr9 6349104 6349249 -111513378 - MIR3 SINE MIR -15 193 34 285 303 19 0 chr9 6349678 6349833 -111512794 - MER103 DNA DNA 0 166 9 2130 120 3 13 chr9 6350520 6350828 -111511799 - AluSx SINE Alu -7 305 1 233 167 17 0 chr9 6350996 6351056 -111511571 - L1ME4a LINE L1 -1 6120 6060 532 290 80 35 chr9 6351072 6351354 -111511273 - L1ME4a LINE L1 -139 5982 5714 447 87 0 0 chr9 6351354 6351423 -111511204 + (TG)n Simple_repeat Simple_repeat 2 70 0 532 290 80 35 chr9 6351423 6351715 -111510912 - L1ME4a LINE L1 -407 5714 5382 1547 198 13 31 chr9 6352070 6352388 -111510239 + AluJo SINE Alu 1 312 0 417 364 18 49 chr9 6352478 6352764 -111509863 - L2 LINE L2 -493 2821 2545 266 259 52 0 chr9 6352846 6352904 -111509723 - MIR SINE MIR -116 92 32 274 354 137 13 chr9 6353033 6353412 -111509215 - L2 LINE L2 -903 2411 1986 666 176 14 131 chr9 6353625 6353846 -111508781 + MIR SINE MIR 68 262 0 1059 94 50 28 chr9 6354249 6354429 -111508198 + L1MB3 LINE L1 5999 6182 -1 612 242 80 58 chr9 6356215 6356553 -111506074 - L1MEc LINE L1 -3723 2423 2110 235 0 0 0 chr9 6356584 6356610 -111506017 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2405 50 0 0 chr9 6356610 6356892 -111505735 - AluY SINE Alu -29 282 1 679 198 93 0 chr9 6356895 6357057 -111505570 - L1 LINE L1 -1800 4346 4170 389 301 46 53 chr9 6358965 6359208 -111503419 - L1 LINE L1 -2791 3355 3112 2176 127 7 0 chr9 6359208 6359515 -111503112 - AluSx SINE Alu -3 309 1 389 301 46 53 chr9 6359515 6359636 -111502991 - L1 LINE L1 -3034 3112 2992 1715 209 64 43 chr9 6359636 6360104 -111502523 + MER31A LTR ERV1 4 481 -4 389 301 46 53 chr9 6360104 6360699 -111501928 - L1 LINE L1 -3154 2992 2402 297 73 0 0 chr9 6360774 6360815 -111501812 - HERVL LTR ERVL -4275 1379 1339 6038 138 16 16 chr9 6360816 6362853 -111499774 + L1MA3 LINE L1 4266 6304 -1 2193 96 0 51 chr9 6363173 6363487 -111499140 - AluSc SINE Alu -11 298 1 2051 118 0 0 chr9 6363693 6363964 -111498663 - AluSx SINE Alu -18 294 24 29 60 0 0 chr9 6364104 6364154 -111498473 + AT_rich Low_complexity Low_complexity 1 50 0 3201 88 0 0 chr9 6364169 6364610 -111498017 + L1P LINE L1 1 441 -5705 2132 85 4 4 chr9 6366072 6366343 -111496284 - AluY SINE Alu -40 271 1 1306 166 45 15 chr9 6367267 6367616 -111495011 - L1MC/D LINE L1 -567 5675 5290 368 272 158 16 chr9 6368010 6368194 -111494433 + MIR SINE MIR 49 258 -4 2149 144 0 0 chr9 6368220 6368519 -111494108 + AluSx SINE Alu 1 299 -13 538 191 122 63 chr9 6369069 6369258 -111493369 + MIR SINE MIR 13 212 -50 841 161 0 15 chr9 6369771 6369908 -111492719 - FLAM_C SINE Alu -8 135 1 558 280 58 13 chr9 6370394 6370619 -111492008 + AluSg/x SINE Alu 66 300 -12 2315 96 7 0 chr9 6370779 6371080 -111491547 + AluSp SINE Alu 2 304 -9 5456 117 56 32 chr9 6371130 6371605 -111491022 - Tigger3b DNA MER2_type -1797 1231 769 2249 109 0 0 chr9 6371605 6371899 -111490728 - AluSx SINE Alu -17 295 2 5456 117 56 32 chr9 6371899 6372160 -111490467 - Tigger3b DNA MER2_type -2259 769 516 1788 154 7 30 chr9 6372160 6372459 -111490168 - AluJb SINE Alu -20 292 1 5456 117 56 32 chr9 6372459 6372639 -111489988 - Tigger3b DNA MER2_type -2512 516 284 2045 126 0 0 chr9 6372639 6372953 -111489674 + AluSx SINE Alu 1 314 0 5456 117 56 32 chr9 6372953 6373050 -111489577 - Tigger3b DNA MER2_type -2744 284 191 358 143 0 0 chr9 6373048 6373104 -111489523 - AluS SINE Alu -246 57 2 * 684 259 153 35 chr9 6373452 6373807 -111488820 + L1ME4a LINE L1 5515 5956 -165 1528 174 0 33 chr9 6373807 6374083 -111488544 + AluJo SINE Alu 1 267 -45 684 259 153 35 chr9 6374083 6374264 -111488363 + L1ME4a LINE L1 5956 6114 -7 2744 149 30 20 chr9 6375300 6375838 -111486789 + L1MA4 LINE L1 5750 6292 -8 21 0 0 0 chr9 6375838 6375859 -111486768 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr9 6376664 6376713 -111485914 + AT_rich Low_complexity Low_complexity 1 49 0 2177 130 3 0 chr9 6376851 6377159 -111485468 - AluSx SINE Alu -3 309 1 410 247 55 22 chr9 6377568 6377750 -111484877 - L1MC5 LINE L1 -444 7517 7330 649 208 29 29 chr9 6377765 6377938 -111484689 + MER58B DNA MER1_type 169 341 0 1223 225 143 54 chr9 6377950 6378678 -111483949 - L1MC5 LINE L1 -630 7331 6543 502 221 52 100 chr9 6379384 6379615 -111483012 + L1ME1 LINE L1 5944 6163 -1 594 200 0 17 chr9 6379864 6379979 -111482648 - MLT1F LTR MaLR -85 482 370 763 256 29 33 chr9 6379991 6380233 -111482394 - MLT1F LTR MaLR -301 241 1 1916 114 0 11 chr9 6380604 6380867 -111481760 + AluSx SINE Alu 32 291 -21 2301 103 0 3 chr9 6380867 6381159 -111481468 + AluSp SINE Alu 1 291 -22 255 343 113 64 chr9 6381570 6381979 -111480648 + L2 LINE L2 2596 3047 -225 181 311 16 0 chr9 6382034 6382095 -111480532 - MIR SINE MIR -21 241 180 1454 295 185 35 chr9 6382541 6383677 -111478950 + L2 LINE L2 1483 2788 -526 2195 84 38 3 chr9 6385416 6385703 -111476924 - AluY SINE Alu -14 297 1 1424 181 55 66 chr9 6385774 6385867 -111476760 + MER2 DNA MER2_type 1 94 -250 2194 120 3 0 chr9 6385867 6386166 -111476461 + AluSx SINE Alu 6 305 -7 1424 181 55 66 chr9 6386166 6386420 -111476207 + MER2 DNA MER2_type 94 344 0 25 51 0 0 chr9 6386450 6386489 -111476138 + AT_rich Low_complexity Low_complexity 1 39 0 2414 94 3 0 chr9 6386499 6386807 -111475820 - AluSp SINE Alu -4 309 1 1334 174 51 68 chr9 6386880 6387174 -111475453 - AluJo SINE Alu -3 309 21 228 321 0 0 chr9 6387305 6387358 -111475269 + C-rich Low_complexity Low_complexity 1 53 0 1104 195 73 41 chr9 6387358 6387604 -111475023 - AluJb SINE Alu -58 254 1 282 240 145 45 chr9 6387605 6387677 -111474950 - HAL1 LINE L1 -159 2348 2285 2511 80 3 0 chr9 6387677 6387988 -111474639 - AluSp SINE Alu -1 312 1 282 240 145 45 chr9 6387988 6388115 -111474512 - HAL1 LINE L1 -222 2285 2129 315 253 33 11 chr9 6388278 6388369 -111474258 - L2 LINE L2 -845 2469 2377 873 81 15 37 chr9 6388578 6388714 -111473913 + FLAM_C SINE Alu 1 133 0 188 377 124 22 chr9 6388858 6389359 -111473268 - L2 LINE L2 -383 2931 2380 2054 136 3 10 chr9 6390073 6390251 -111472376 - AluSx SINE Alu 0 312 135 2086 151 0 0 chr9 6390251 6390562 -111472065 - AluSq SINE Alu -2 311 1 2054 136 3 10 chr9 6390562 6390693 -111471934 - AluSx SINE Alu -177 135 5 356 143 14 0 chr9 6390784 6390854 -111471773 - L1MD2 LINE L1 0 6359 6289 1921 141 0 35 chr9 6390854 6391167 -111471460 + AluJb SINE Alu 1 302 -10 198 0 0 0 chr9 6391609 6391631 -111470996 + (T)n Simple_repeat Simple_repeat 1 22 0 2015 137 0 3 chr9 6391791 6392084 -111470543 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr9 6392279 6392300 -111470327 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr9 6393331 6393368 -111469259 + AT_rich Low_complexity Low_complexity 1 37 0 6861 112 12 9 chr9 6395313 6396745 -111465882 + L1MA1 LINE L1 4869 6302 0 1879 218 95 57 chr9 6396762 6397809 -111464818 + L1MD2 LINE L1 5241 6344 -15 2378 95 0 3 chr9 6397812 6398116 -111464511 + AluSx SINE Alu 1 303 -9 1566 207 111 53 chr9 6398838 6399350 -111463277 - MLT1F LTR MaLR 0 542 1 1568 161 4 12 chr9 6399464 6399712 -111462915 + AluJb SINE Alu 1 246 -66 941 285 108 5 chr9 6399794 6400163 -111462464 - MLT1I LTR MaLR -2 407 1 575 225 202 19 chr9 6400218 6400525 -111462102 + L1ME LINE L1 5452 5814 -350 317 180 100 80 chr9 6401385 6401535 -111461092 + L1MC5 LINE L1 7246 7398 -563 2609 23 0 0 chr9 6401662 6401962 -111460665 - AluYa5 SINE Alu -11 300 1 304 218 149 0 chr9 6402147 6402234 -111460393 - L1ME LINE L1 -385 5736 5637 22 35 0 0 chr9 6402275 6402304 -111460323 + AT_rich Low_complexity Low_complexity 1 29 0 850 236 6 0 chr9 6402427 6402609 -111460018 + MER58A DNA MER1_type 42 224 0 21 0 0 0 chr9 6402611 6402632 -111459995 + AT_rich Low_complexity Low_complexity 1 21 0 2213 115 0 0 chr9 6402927 6403215 -111459412 + AluSg SINE Alu 1 288 -22 2097 119 7 3 chr9 6403290 6403585 -111459042 + AluSp SINE Alu 1 296 -17 1841 158 3 3 chr9 6403761 6404058 -111458569 - AluSx SINE Alu -13 299 3 22 0 0 0 chr9 6404060 6404082 -111458545 + AT_rich Low_complexity Low_complexity 1 22 0 732 256 105 49 chr9 6404142 6405094 -111457533 - L1ME LINE L1 -402 5751 4742 301 327 99 6 chr9 6405190 6405502 -111457125 - L1ME LINE L1 -1800 4329 3989 746 263 161 12 chr9 6405510 6406027 -111456600 - L1ME LINE L1 -2381 3748 3155 1040 118 0 0 chr9 6406409 6406545 -111456082 + AluSq/x SINE Alu 1 136 -176 2222 127 0 6 chr9 6406546 6406860 -111455767 + AluSx SINE Alu 1 312 0 673 259 73 54 chr9 6407022 6407295 -111455332 + L2 LINE L2 2864 3145 -168 1719 203 97 32 chr9 6407295 6407769 -111454858 - MLT1D LTR MaLR 0 505 1 673 259 73 54 chr9 6407769 6407808 -111454819 + L2 LINE L2 3145 3182 -131 198 0 0 0 chr9 6407884 6407906 -111454721 + (T)n Simple_repeat Simple_repeat 1 22 0 252 339 15 31 chr9 6408025 6408155 -111454472 - L1ME LINE L1 -5553 566 439 562 248 29 79 chr9 6409592 6409839 -111452788 - L1MC5 LINE L1 -37 7924 7691 1613 205 0 3 chr9 6409839 6410136 -111452491 + AluJb SINE Alu 1 296 -16 562 248 29 79 chr9 6410136 6410166 -111452461 - L1MC5 LINE L1 -270 7691 7661 255 221 91 0 chr9 6410213 6410290 -111452337 - U13 snRNA snRNA -2 102 19 32 86 0 0 chr9 6410625 6410706 -111451921 + AT_rich Low_complexity Low_complexity 1 81 0 180 262 119 32 chr9 6410758 6410884 -111451743 - MIR SINE MIR -55 153 17 216 163 0 0 chr9 6411003 6411046 -111451581 + A-rich Low_complexity Low_complexity 1 43 0 304 204 11 45 chr9 6411253 6411341 -111451286 + MIR SINE MIR 96 180 -82 223 57 86 0 chr9 6411442 6411477 -111451150 + L2 LINE L2 3017 3054 -259 189 0 0 0 chr9 6412070 6412091 -111450536 + (TC)n Simple_repeat Simple_repeat 2 22 0 2293 114 0 3 chr9 6412446 6412753 -111449874 + AluSx SINE Alu 2 307 -5 23 33 0 0 chr9 6413165 6413195 -111449432 + AT_rich Low_complexity Low_complexity 1 30 0 2243 116 0 0 chr9 6413252 6413554 -111449073 + AluSg SINE Alu 2 303 -7 1881 138 0 28 chr9 6413565 6413856 -111448771 + AluSx SINE Alu 1 283 -29 2387 103 0 0 chr9 6414451 6414753 -111447874 + AluSq SINE Alu 1 302 -11 26 30 0 0 chr9 6414768 6414801 -111447826 + AT_rich Low_complexity Low_complexity 1 33 0 258 280 49 21 chr9 6414965 6415108 -111447519 + L1M4 LINE L1 4599 4745 -1401 2733 167 5 92 chr9 6415109 6415683 -111446944 - MER44D DNA MER2_type 0 605 27 1468 213 119 20 chr9 6415693 6416140 -111446487 + L1M4 LINE L1 4744 5234 -912 387 291 17 26 chr9 6416623 6416740 -111445887 + LTR67 LTR ERVL 432 547 -10 420 129 0 0 chr9 6417008 6417070 -111445557 + AluSg/x SINE Alu 135 196 -114 2010 116 0 34 chr9 6417070 6417362 -111445265 + AluSx SINE Alu 23 304 -8 450 131 7 189 chr9 6418021 6418105 -111444522 + MER5A DNA MER1_type 1 46 -143 1965 103 41 0 chr9 6418105 6418376 -111444251 + AluSx SINE Alu 31 312 0 450 131 7 189 chr9 6418376 6418444 -111444183 + MER5A DNA MER1_type 46 125 -64 302 233 103 43 chr9 6418649 6418765 -111443862 + MER117 DNA MER1_type 53 175 -22 1199 128 0 22 chr9 6418932 6419112 -111443515 + AluSg/x SINE Alu 132 307 -3 440 227 0 42 chr9 6419130 6419249 -111443378 - MER5B DNA MER1_type -64 114 1 968 181 39 6 chr9 6419257 6419439 -111443188 + MER5A DNA MER1_type 2 189 0 1779 171 6 16 chr9 6420013 6420328 -111442299 - MLT1A1 LTR MaLR 0 365 54 1363 106 5 0 chr9 6420334 6420523 -111442104 - AluSq SINE Alu -1 312 123 253 278 195 73 chr9 6421210 6421366 -111441261 + MIR SINE MIR 33 221 -41 2197 115 3 13 chr9 6421366 6421678 -111440949 + AluSq SINE Alu 1 309 -4 253 278 195 73 chr9 6421678 6421726 -111440901 + MIR SINE MIR 221 262 0 495 273 67 70 chr9 6421963 6422191 -111440436 + MLT1J LTR MaLR 1 229 -282 2426 97 0 3 chr9 6422191 6422501 -111440126 - AluSx SINE Alu -3 309 1 495 273 67 70 chr9 6422501 6422628 -111439999 + MLT1J LTR MaLR 229 355 -156 2193 125 3 0 chr9 6424028 6424324 -111438303 + AluSp SINE Alu 1 297 -16 2156 67 103 0 chr9 6424382 6424664 -111437963 + AluY SINE Alu 1 311 0 418 298 123 21 chr9 6426763 6427186 -111435441 + L1ME4a LINE L1 5635 6100 -21 200 139 0 28 chr9 6427271 6427307 -111435320 - MIR SINE MIR -110 152 118 1679 177 42 0 chr9 6427482 6427770 -111434857 - AluJb SINE Alu -12 300 1 201 255 0 0 chr9 6427841 6427888 -111434739 - MER5A DNA MER1_type 0 189 143 253 317 67 29 chr9 6427929 6427948 -111434679 - L1MC4 LINE L1 -1 8041 8024 1894 155 3 20 chr9 6427948 6428245 -111434382 + AluJb SINE Alu 1 292 -20 253 317 67 29 chr9 6428245 6428433 -111434194 - L1MC4 LINE L1 -18 8024 7826 404 202 1 0 chr9 6428475 6428557 -111434070 - L1ME2 LINE L1 -22 6140 6058 243 304 89 0 chr9 6428674 6428786 -111433841 + MER5A DNA MER1_type 43 164 -25 243 282 39 13 chr9 6428718 6428796 -111433831 - MER5A DNA MER1_type -85 104 25 251 109 43 0 chr9 6428991 6429037 -111433590 - L2 LINE L2 -2 3311 3264 2053 127 0 3 chr9 6429647 6429930 -111432697 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr9 6429957 6429978 -111432649 + AT_rich Low_complexity Low_complexity 1 21 0 227 132 26 0 chr9 6431286 6431324 -111431303 - Tigger4(Zombi) DNA MER2_type -2646 85 47 743 210 21 0 chr9 6431327 6431470 -111431157 + AluSq/x SINE Alu 2 147 -166 565 143 0 11 chr9 6431470 6431561 -111431066 + AluJb SINE Alu 210 299 -3 1991 136 3 17 chr9 6431992 6432293 -111430334 + AluSx SINE Alu 1 297 -15 2367 85 0 0 chr9 6432411 6432704 -111429923 + AluSc SINE Alu 1 293 -16 1800 138 14 18 chr9 6432704 6432987 -111429640 - AluJb SINE Alu -28 284 3 1954 167 3 3 chr9 6433055 6433361 -111429266 + AluJb SINE Alu 1 306 -6 1381 185 8 0 chr9 6433501 6433739 -111428888 + AluJo SINE Alu 56 295 -17 210 239 120 35 chr9 6435373 6435515 -111427112 + L2 LINE L2 2725 2878 -436 2321 117 0 0 chr9 6435837 6436146 -111426481 + AluSx SINE Alu 1 309 -3 255 273 112 25 chr9 6437379 6437540 -111425087 - MER5B DNA MER1_type 0 178 4 1973 128 3 72 chr9 6440979 6441314 -111421313 + AluSx SINE Alu 1 312 0 183 218 109 0 chr9 6441447 6441502 -111421125 - MIR SINE MIR -61 147 87 2264 121 0 3 chr9 6442003 6442316 -111420311 + AluSx SINE Alu 1 312 0 1584 94 49 8 chr9 6442550 6442795 -111419832 + L1MA5A LINE L1 6040 6294 -3 2359 94 0 3 chr9 6442806 6443113 -111419514 + AluSc SINE Alu 1 306 -3 2378 100 0 0 chr9 6444725 6445034 -111417593 + AluSq SINE Alu 1 309 -4 2107 96 55 17 chr9 6445043 6445335 -111417292 + AluSg SINE Alu 1 303 -7 22 0 0 0 chr9 6446129 6446151 -111416476 + AT_rich Low_complexity Low_complexity 1 22 0 2064 187 85 13 chr9 6446228 6446699 -111415928 + MLT1D LTR MaLR 1 505 0 2071 139 0 0 chr9 6446860 6447154 -111415473 + AluSx SINE Alu 1 294 -18 184 290 48 0 chr9 6447640 6447702 -111414925 + MIR SINE MIR 193 257 -5 2236 104 0 3 chr9 6448062 6448351 -111414276 - AluSx SINE Alu -21 291 4 368 242 53 11 chr9 6449347 6449442 -111413185 + FRAM SINE Alu 1 99 -67 2359 97 0 7 chr9 6449457 6449757 -111412870 + AluSx SINE Alu 1 298 -14 201 263 91 40 chr9 6450395 6450494 -111412133 - L2 LINE L2 0 3272 3169 22 35 0 0 chr9 6454035 6454064 -111408563 + AT_rich Low_complexity Low_complexity 1 29 0 1823 165 17 3 chr9 6454975 6455272 -111407355 - AluJb SINE Alu -11 301 1 415 290 91 23 chr9 6457240 6457416 -111405211 + L2 LINE L2 2895 3082 -231 607 188 20 0 chr9 6457441 6457542 -111405085 - FLAM_A SINE Alu -28 114 12 274 265 125 0 chr9 6457543 6457673 -111404954 + L2 LINE L2 3113 3266 -47 184 42 0 0 chr9 6457953 6457977 -111404650 + (TTTG)n Simple_repeat Simple_repeat 2 144 0 1881 140 3 7 chr9 6457977 6458262 -111404365 - AluSx SINE Alu -28 284 1 23 33 0 0 chr9 6458273 6458303 -111404324 + AT_rich Low_complexity Low_complexity 1 30 0 2485 71 0 0 chr9 6458982 6459291 -111403336 - AluY SINE Alu -2 309 1 696 186 76 0 chr9 6459324 6459496 -111403131 - L1MA4 LINE L1 -6 6294 6110 180 219 0 0 chr9 6460235 6460276 -111402351 + (TA)n Simple_repeat Simple_repeat 2 42 0 1850 160 7 3 chr9 6460276 6460563 -111402064 - AluSx SINE Alu -24 288 1 252 299 43 43 chr9 6460742 6460859 -111401768 - MIR SINE MIR -116 146 30 281 109 43 0 chr9 6462160 6462206 -111400421 + Alu SINE Alu 245 292 -10 1169 180 48 0 chr9 6462208 6462414 -111400213 + AluJo SINE Alu 87 302 -10 360 288 45 0 chr9 6462414 6462525 -111400102 + L1 LINE L1 3041 3156 -2990 326 254 100 39 chr9 6462651 6462781 -111399846 + HAL1b LINE L1 1203 1340 -8 299 228 0 0 chr9 6463513 6463570 -111399057 + MLT1A2 LTR MaLR 1 57 -317 2365 106 0 3 chr9 6463571 6463883 -111398744 + AluSx SINE Alu 1 311 -1 2166 122 7 0 chr9 6463894 6464197 -111398430 + AluSx SINE Alu 1 305 -7 429 100 50 10 chr9 6464365 6464465 -111398162 + (TA)n Simple_repeat Simple_repeat 2 105 0 352 187 44 0 chr9 6464532 6464623 -111398004 - L1MB4 LINE L1 -5 6175 6081 2241 123 0 0 chr9 6465486 6465787 -111396840 + AluSx SINE Alu 1 301 -11 1354 93 67 44 chr9 6466414 6466516 -111396111 - MER30 DNA MER1_type 0 230 132 2138 127 0 3 chr9 6466516 6466816 -111395811 + AluSx SINE Alu 1 299 -13 1354 93 67 44 chr9 6466816 6466938 -111395689 - MER30 DNA MER1_type -98 132 1 1648 197 14 0 chr9 6467879 6468163 -111394464 - AluJb SINE Alu -16 296 9 2154 79 3 60 chr9 6468388 6468705 -111393922 + AluY SINE Alu 1 299 -12 1974 110 0 55 chr9 6468716 6469070 -111393557 + AluSx SINE Alu 1 312 0 800 137 8 8 chr9 6469184 6469315 -111393312 - FLAM_C SINE Alu -12 131 1 339 280 60 0 chr9 6469447 6469547 -111393080 + MIR SINE MIR 49 154 -108 2060 112 4 0 chr9 6469913 6470209 -111392418 + AluSg SINE Alu 3 299 0 397 258 139 46 chr9 6470855 6471399 -111391228 + L1MEd LINE L1 957 1651 -839 2068 103 0 82 chr9 6471421 6471557 -111391070 + AluSx SINE Alu 1 147 -165 2321 58 10 7 chr9 6471557 6471879 -111390748 + AluY SINE Alu 1 311 0 2068 103 0 82 chr9 6471879 6472073 -111390554 + AluSx SINE Alu 147 304 -8 9415 46 0 1 chr9 6472297 6474265 -111388362 + L1PA5 LINE L1 4197 6153 -1 2041 118 54 0 chr9 6474600 6474896 -111387731 - AluSq SINE Alu -1 312 1 1992 120 0 11 chr9 6475147 6475458 -111387169 + AluSc SINE Alu 1 308 0 2482 224 79 22 chr9 6476151 6477183 -111385444 + L1MDb LINE L1 767 2007 -4399 1898 122 3 24 chr9 6477183 6477479 -111385148 + AluSq SINE Alu 1 290 -23 728 247 103 0 chr9 6477657 6477851 -111384776 - L2 LINE L2 -236 3077 2864 2277 121 0 6 chr9 6478015 6478329 -111384298 - AluSx SINE Alu 0 312 1 1040 118 0 0 chr9 6478330 6478466 -111384161 - AluSq/x SINE Alu -176 136 1 729 265 161 12 chr9 6478848 6479365 -111383262 + L1MDb LINE L1 3432 4025 -2381 301 327 99 6 chr9 6479373 6479685 -111382942 + L1MDb LINE L1 4266 4606 -1800 732 256 105 49 chr9 6479781 6480733 -111381894 + L1MDb LINE L1 5019 6028 -402 22 0 0 0 chr9 6480792 6480814 -111381813 + AT_rich Low_complexity Low_complexity 1 22 0 1854 155 3 3 chr9 6480816 6481113 -111381514 + AluSx SINE Alu 3 299 -13 2107 118 7 3 chr9 6481289 6481585 -111381042 - AluSp SINE Alu -16 297 1 2215 115 0 0 chr9 6481660 6481948 -111380679 - AluSg SINE Alu -22 288 1 21 0 0 0 chr9 6482243 6482264 -111380363 + AT_rich Low_complexity Low_complexity 1 21 0 850 236 6 0 chr9 6482266 6482448 -111380179 - MER58A DNA MER1_type 0 224 42 22 35 0 0 chr9 6482571 6482600 -111380027 + AT_rich Low_complexity Low_complexity 1 29 0 304 218 149 0 chr9 6482641 6482728 -111379899 + L1ME LINE L1 5637 5736 -385 1916 133 4 0 chr9 6482913 6483184 -111379443 + AluSx SINE Alu 1 272 -40 285 149 14 27 chr9 6483184 6483258 -111379369 + GA-rich Low_complexity Low_complexity 1 73 0 1577 209 3 0 chr9 6484596 6484893 -111377734 - AluJo SINE Alu -14 298 1 2283 110 0 0 chr9 6484898 6485198 -111377429 - AluSx SINE Alu -12 300 1 5076 55 12 5 chr9 6485356 6486009 -111376618 - L1PA7 LINE L1 -1 6153 5496 15241 98 23 32 chr9 6486009 6488583 -111374044 + L1MA4A LINE L1 3071 5588 -715 1756 187 7 0 chr9 6488583 6488882 -111373745 - AluJb SINE Alu -11 301 1 15241 98 23 32 chr9 6488882 6489233 -111373394 + L1MA4A LINE L1 5588 5941 -362 3433 53 0 2 chr9 6488981 6489454 -111373173 + L1PA5 LINE L1 5690 6161 0 * 914 189 86 6 chr9 6489566 6489741 -111372886 + MER5A DNA MER1_type 1 189 0 425 300 79 11 chr9 6490385 6490575 -111372052 + MIR SINE MIR 60 262 0 1812 123 0 11 chr9 6490665 6490925 -111371702 - AluY SINE Alu -15 296 40 212 298 114 23 chr9 6491731 6491862 -111370765 + L2 LINE L2 2259 2401 -913 890 281 91 12 chr9 6492122 6492539 -111370088 + L1MC5 LINE L1 5476 5925 -1883 254 243 0 27 chr9 6492540 6492614 -111370013 + (TA)n Simple_repeat Simple_repeat 1 72 0 822 74 0 50 chr9 6492675 6492781 -111369846 + AluSc SINE Alu 174 284 -25 237 33 0 0 chr9 6492781 6492811 -111369816 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2227 53 36 13 chr9 6492814 6493118 -111369509 + AluY SINE Alu 1 311 0 416 201 179 80 chr9 6493579 6493974 -111368653 + L1MC5 LINE L1 6563 6920 -888 478 253 113 27 chr9 6494154 6494446 -111368181 + L1MC5 LINE L1 7353 7669 -292 2206 175 68 68 chr9 6494466 6495026 -111367601 - MER68 LTR ERV1 0 562 3 234 321 28 9 chr9 6495091 6495200 -111367427 - LTR16B LTR ERVL -62 402 292 273 323 8 24 chr9 6495298 6495422 -111367205 - LTR16B LTR ERVL -309 155 34 371 235 17 9 chr9 6495499 6495614 -111367013 + L1MC5 LINE L1 7744 7859 -102 349 229 141 65 chr9 6495737 6495907 -111366720 - HAL1 LINE L1 -20 2487 2305 325 259 265 24 chr9 6495985 6496151 -111366476 - MIR SINE MIR -40 222 17 531 228 159 38 chr9 6496199 6496594 -111366033 - HAL1 LINE L1 -337 2170 1728 485 289 73 50 chr9 6496636 6496979 -111365648 - HAL1 LINE L1 -2156 351 1 2376 79 0 3 chr9 6497396 6497688 -111364939 + AluY SINE Alu 1 291 -20 1879 151 24 10 chr9 6497718 6498016 -111364611 - AluSx SINE Alu -8 304 3 1561 167 0 25 chr9 6498046 6498142 -111364485 + AluJb SINE Alu 43 140 -172 1942 124 39 0 chr9 6498142 6498425 -111364202 + AluSx SINE Alu 1 294 -18 1561 167 0 25 chr9 6498425 6498603 -111364024 + AluJb SINE Alu 140 310 -2 1817 169 0 20 chr9 6498721 6499022 -111363605 + AluJo SINE Alu 1 295 -17 1921 137 11 0 chr9 6499024 6499301 -111363326 + AluSx SINE Alu 1 280 -32 878 145 0 36 chr9 6499438 6499576 -111363051 - FLAM_C SINE Alu 0 133 1 2092 125 3 3 chr9 6499683 6499979 -111362648 + AluSq SINE Alu 1 296 -17 210 235 20 92 chr9 6499979 6500077 -111362550 + MER5A DNA MER1_type 67 157 -32 460 269 173 15 chr9 6501112 6501309 -111361318 + MIR SINE MIR 3 230 -32 1616 167 7 48 chr9 6501795 6502133 -111360494 + AluJo SINE Alu 2 327 0 1869 137 7 0 chr9 6502321 6502592 -111360035 + AluSx SINE Alu 1 273 -39 599 180 33 161 chr9 6503046 6503183 -111359444 - MER5A DNA MER1_type -5 184 82 1767 154 17 33 chr9 6503183 6503482 -111359145 - AluJb SINE Alu -12 300 7 599 180 33 161 chr9 6503482 6503555 -111359072 - MER5A DNA MER1_type -107 82 1 279 146 42 0 chr9 6503563 6503611 -111359016 + MER5B DNA MER1_type 1 50 -128 321 282 58 83 chr9 6503653 6503809 -111358818 + MER5B DNA MER1_type 26 177 -1 21 0 0 0 chr9 6504037 6504058 -111358569 + AT_rich Low_complexity Low_complexity 1 21 0 1430 142 134 0 chr9 6505145 6505398 -111357229 + AluSx SINE Alu 14 300 -12 492 328 218 29 chr9 6506217 6506673 -111355954 - L3 LINE CR1 -35 1542 971 1921 158 20 0 chr9 6506673 6506977 -111355650 + AluSx SINE Alu 1 310 -2 492 328 218 29 chr9 6506977 6507047 -111355580 - L3 LINE CR1 -606 971 916 2104 143 0 0 chr9 6507052 6507360 -111355267 + AluSx SINE Alu 1 308 -4 1944 130 0 7 chr9 6508676 6508960 -111353667 + AluSx SINE Alu 1 303 0 190 0 0 0 chr9 6508960 6508981 -111353646 + (TAAA)n Simple_repeat Simple_repeat 1 52 0 544 164 239 13 chr9 6508992 6509151 -111353476 + L1MB7 LINE L1 5990 6184 0 1402 204 25 32 chr9 6509161 6509291 -111353336 + AluJb SINE Alu 3 132 -180 1986 105 54 14 chr9 6509291 6509585 -111353042 + AluSx SINE Alu 1 306 -6 1402 204 25 32 chr9 6509585 6509734 -111352893 + AluJb SINE Alu 132 280 -32 2099 118 7 7 chr9 6509846 6510135 -111352492 + AluSx SINE Alu 1 289 -23 2113 109 31 7 chr9 6511451 6511745 -111350882 + AluSx SINE Alu 1 301 -11 320 331 142 7 chr9 6511980 6512128 -111350499 - MIR SINE MIR -89 173 6 1281 199 102 0 chr9 6512993 6513259 -111349368 - AluJo SINE Alu -19 293 1 1830 213 107 22 chr9 6513658 6514146 -111348481 - MER74B LTR ERVL -16 606 78 1941 145 17 0 chr9 6514275 6514565 -111348062 + AluSq SINE Alu 1 295 -18 261 308 64 0 chr9 6514729 6514807 -111347820 + MIR SINE MIR 31 113 -149 1043 95 0 20 chr9 6514956 6515104 -111347523 + AluSq/x SINE Alu 3 147 -165 360 191 0 0 chr9 6515104 6515172 -111347455 + Alu SINE Alu 234 301 0 182 369 98 16 chr9 6515268 6515390 -111347237 - MIR SINE MIR -112 150 19 2048 134 3 7 chr9 6515404 6515703 -111346924 - AluSx SINE Alu -14 298 1 1911 160 20 0 chr9 6515737 6516043 -111346584 + AluJo SINE Alu 1 312 0 249 278 35 43 chr9 6516198 6516313 -111346314 + L1ME3A LINE L1 5962 6075 -95 2022 134 7 0 chr9 6516888 6517180 -111345447 - AluSx SINE Alu -18 294 1 2176 118 10 0 chr9 6517537 6517842 -111344785 + AluSq SINE Alu 1 308 -5 209 370 69 40 chr9 6518132 6518305 -111344322 - MIR SINE MIR -84 178 1 2571 153 244 139 chr9 6518648 6518798 -111343829 + L1MC3 LINE L1 6565 6698 -1087 2009 115 13 35 chr9 6518798 6519112 -111343515 - AluSx SINE Alu -5 307 1 2571 153 244 139 chr9 6519112 6519395 -111343232 + L1MC3 LINE L1 6698 6950 -835 271 214 39 78 chr9 6519395 6519498 -111343129 + MLT1F1 LTR MaLR 27 125 -442 2571 153 244 139 chr9 6519498 6520065 -111342562 + L1MC3 LINE L1 6950 7783 -2 349 285 46 8 chr9 6520423 6520553 -111342074 - L1 LINE L1 -1952 4194 4060 2246 108 0 3 chr9 6520616 6520921 -111341706 - AluSg SINE Alu -6 304 1 987 148 12 0 chr9 6521807 6521969 -111340658 + AluJb SINE Alu 131 294 -18 474 271 86 24 chr9 6521969 6522224 -111340403 + L1ME3A LINE L1 4492 4762 -1384 1233 117 6 0 chr9 6522227 6522398 -111340229 + AluSg SINE Alu 23 194 -116 453 260 136 16 chr9 6522451 6522664 -111339963 + L1ME3A LINE L1 5612 5800 -321 2131 119 0 16 chr9 6522868 6523178 -111339449 + AluSx SINE Alu 1 305 -7 2300 63 7 17 chr9 6523863 6524162 -111338465 - AluY SINE Alu -15 296 1 2069 112 17 3 chr9 6524230 6524524 -111338103 + AluSg SINE Alu 1 298 -12 1489 161 38 65 chr9 6524536 6524851 -111337776 + AluJb SINE Alu 1 307 0 357 179 64 13 chr9 6525281 6525359 -111337268 + MLT1B LTR MaLR 38 119 -271 1690 168 144 47 chr9 6525386 6525808 -111336819 + MLT1C LTR MaLR 1 463 -4 23 0 0 0 chr9 6526302 6526325 -111336302 + AT_rich Low_complexity Low_complexity 1 23 0 185 123 53 18 chr9 6527510 6527567 -111335060 + (TA)n Simple_repeat Simple_repeat 1 59 0 2417 28 52 0 chr9 6527758 6528049 -111334578 + AluY SINE Alu 1 306 -5 1998 103 19 23 chr9 6528217 6528527 -111334100 + AluSc SINE Alu 1 309 0 460 149 243 68 chr9 6528548 6528696 -111333931 - MER5A DNA MER1_type -6 183 10 325 290 54 0 chr9 6528940 6529033 -111333594 + MER91B DNA MER1_type 92 189 -1 30 0 0 0 chr9 6531142 6531172 -111331455 + GC_rich Low_complexity Low_complexity 1 30 0 1326 47 0 10 chr9 6532378 6532397 -111330230 - AluY SINE Alu -7 304 286 279 0 0 0 chr9 6532397 6532428 -111330199 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1326 47 0 10 chr9 6532428 6532666 -111329961 - AluY SINE Alu -25 286 2 2336 92 0 7 chr9 6532905 6533209 -111329418 + AluSx SINE Alu 1 302 -10 545 105 13 0 chr9 6533381 6533457 -111329170 + MADE1 DNA Mariner 1 77 -3 253 275 174 9 chr9 6533816 6533925 -111328702 + MIR SINE MIR 17 143 -119 201 341 49 71 chr9 6534275 6534686 -111327941 - L2 LINE L2 -656 2658 2257 1871 175 3 0 chr9 6535172 6535480 -111327147 - AluSx SINE Alu -3 309 1 275 259 206 46 chr9 6536435 6536566 -111326061 - MIR3 SINE MIR -36 172 21 1363 175 163 44 chr9 6536858 6536878 -111325749 + LTR54B LTR ERV1 1 17 -481 2006 133 0 36 chr9 6536878 6537186 -111325441 + AluSx SINE Alu 1 297 -15 1363 175 163 44 chr9 6537186 6537396 -111325231 + LTR54B LTR ERV1 17 201 -297 2255 119 0 0 chr9 6537396 6537691 -111324936 + AluSx SINE Alu 1 295 -17 1363 175 163 44 chr9 6537691 6537894 -111324733 + LTR54B LTR ERV1 201 487 -11 420 221 11 72 chr9 6537988 6538129 -111324498 - MLT1G1 LTR MaLR -37 556 425 290 138 35 11 chr9 6538166 6538253 -111324374 + CT-rich Low_complexity Low_complexity 2 90 0 1133 226 8 77 chr9 6538280 6538459 -111324168 - MLT1G1 LTR MaLR -294 296 192 2355 75 9 40 chr9 6538459 6538781 -111323846 - AluSx SINE Alu 0 312 1 1133 226 8 77 chr9 6538781 6538961 -111323666 - MLT1G1 LTR MaLR -398 192 1 1709 197 0 7 chr9 6539029 6539323 -111323304 + AluJo SINE Alu 1 292 -20 793 273 24 14 chr9 6539669 6539878 -111322749 - MER58A DNA MER1_type -10 214 4 1578 158 18 32 chr9 6539982 6540260 -111322367 - AluJo SINE Alu -38 274 1 298 238 72 0 chr9 6540263 6540382 -111322245 - L1ME LINE L1 -397 5765 5631 574 248 46 100 chr9 6540501 6540634 -111321993 - Tigger8 DNA MER2_type -180 486 347 1718 183 3 3 chr9 6540634 6540924 -111321703 - AluJb SINE Alu -17 295 6 574 248 46 100 chr9 6540924 6541141 -111321486 - Tigger8 DNA MER2_type -319 347 155 2127 138 0 0 chr9 6541248 6541560 -111321067 - AluSx SINE Alu 0 312 1 1269 204 12 12 chr9 6541686 6541936 -111320691 - MLT1H LTR MaLR -278 271 22 1226 124 0 0 chr9 6541937 6542106 -111320521 - AluSg/x SINE Alu -14 298 130 2366 83 0 13 chr9 6542109 6542409 -111320218 - AluY SINE Alu -15 296 1 450 139 0 28 chr9 6542636 6542708 -111319919 - Tigger2 DNA MER2_type -2648 70 1 941 207 57 10 chr9 6542954 6543147 -111319480 - MER8 DNA MER2_type -37 202 1 2504 230 109 45 chr9 6543204 6543996 -111318631 + L1ME3 LINE L1 5305 6146 -16 1953 120 11 0 chr9 6544213 6544522 -111318105 + AluSx SINE Alu 1 312 0 206 163 41 0 chr9 6544639 6544688 -111317939 + (CATG)n Simple_repeat Simple_repeat 4 54 0 204 275 33 33 chr9 6544688 6544779 -111317848 + (TATG)n Simple_repeat Simple_repeat 4 94 0 746 196 15 23 chr9 6545236 6545369 -111317258 - FLAM_A SINE Alu 0 133 2 1855 149 7 13 chr9 6546289 6546590 -111316037 - AluJo SINE Alu -7 305 7 561 144 25 8 chr9 6546938 6547056 -111315571 + CT-rich Low_complexity Low_complexity 1 120 0 2134 135 0 0 chr9 6547070 6547366 -111315261 - AluSx SINE Alu -16 296 1 341 176 29 29 chr9 6547441 6547509 -111315118 - MLT1B LTR MaLR 0 390 323 1805 132 50 46 chr9 6547669 6548022 -111314605 - MLT1B LTR MaLR -36 392 3 1278 186 7 52 chr9 6548606 6548875 -111313752 + AluJb SINE Alu 38 294 -18 334 271 140 28 chr9 6549588 6549806 -111312821 - L1MC/D LINE L1 -301 5820 5631 2142 136 0 0 chr9 6549811 6550112 -111312515 - AluSx SINE Alu -11 301 1 189 0 0 0 chr9 6550239 6550260 -111312367 + (TATAA)n Simple_repeat Simple_repeat 4 24 0 31 76 0 0 chr9 6550260 6550326 -111312301 + AT_rich Low_complexity Low_complexity 1 66 0 1276 194 68 4 chr9 6550326 6550439 -111312188 + AluJb SINE Alu 10 114 -198 276 30 0 0 chr9 6550439 6550472 -111312155 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 1276 194 68 4 chr9 6550472 6550610 -111312017 + AluJb SINE Alu 114 277 -35 306 73 0 0 chr9 6550638 6550679 -111311948 + (CA)n Simple_repeat Simple_repeat 2 42 0 15881 157 16 24 chr9 6550716 6550882 -111311745 - L1MA3 LINE L1 -2 7722 7556 1903 169 0 6 chr9 6550882 6551196 -111311431 - AluSx SINE Alu 0 312 1 15881 157 16 24 chr9 6551196 6553579 -111309048 - L1MA3 LINE L1 -168 7556 5154 1371 203 43 14 chr9 6553579 6553860 -111308767 - AluJo SINE Alu -23 289 1 15881 157 16 24 chr9 6553860 6553960 -111308667 - L1MA3 LINE L1 -2570 5154 5055 21572 30 3 2 chr9 6553960 6557171 -111305456 + L1PA3 LINE L1 2938 6155 0 15881 157 16 24 chr9 6557171 6558347 -111304280 - L1MA3 LINE L1 -2669 5055 3871 2305 85 3 3 chr9 6558347 6558640 -111303987 - AluSp SINE Alu -20 293 1 15881 157 16 24 chr9 6558640 6558986 -111303641 - L1MA3 LINE L1 -3853 3871 3524 1703 180 0 66 chr9 6558986 6559320 -111303307 - AluJb SINE Alu 0 312 1 263 274 27 0 chr9 6559268 6559341 -111303286 - AluSp SINE Alu -116 187 113 * 15881 157 16 24 chr9 6559320 6559562 -111303065 - L1MA3 LINE L1 -4200 3524 3353 1941 135 74 19 chr9 6559562 6559887 -111302740 + MER61A LTR ERV1 1 343 0 2712 176 35 20 chr9 6559888 6560427 -111302200 + MER61A-int LTR ERV1 3 549 -4668 337 134 45 15 chr9 6560489 6560556 -111302071 + MER61A-int LTR ERV1 731 799 -4418 * 8320 88 82 25 chr9 6560530 6560733 -111301894 + MER61A-int LTR ERV1 1320 1510 -3707 1892 117 60 0 chr9 6560733 6561014 -111301613 - AluY SINE Alu -1 310 13 8320 88 82 25 chr9 6561014 6562136 -111300491 + MER61A-int LTR ERV1 1510 2721 -2496 44061 50 1 4 chr9 6562154 6568320 -111294307 - L1PA5 LINE L1 -7 6147 2 15736 84 5 0 chr9 6568320 6570376 -111292251 - L1P LINE L1 -4069 2077 11 17498 79 49 22 chr9 6570385 6570586 -111292041 + MER61A-int LTR ERV1 2709 2903 -2314 1966 135 7 3 chr9 6570586 6570882 -111291745 - AluSx SINE Alu -15 297 1 17498 79 49 22 chr9 6570882 6573124 -111289503 + MER61A-int LTR ERV1 2903 5217 0 384 129 16 0 chr9 6573124 6573186 -111289441 + MER61A LTR ERV1 1 63 -280 4723 135 3 7 chr9 6573186 6573877 -111288750 - THE1-int LTR MaLR -264 1316 629 1830 166 7 7 chr9 6573894 6574196 -111288431 + AluJb SINE Alu 1 302 -10 15042 141 12 6 chr9 6574196 6576436 -111286191 - L1M1 LINE L1 -5301 2264 12 337 268 0 0 chr9 6576973 6577044 -111285583 - L1ME LINE L1 -539 5582 5512 311 243 112 57 chr9 6577053 6577190 -111285437 - MER5A DNA MER1_type -3 186 29 360 94 0 0 chr9 6577675 6577728 -111284899 + (TCCC)n Simple_repeat Simple_repeat 1 53 0 803 215 0 0 chr9 6577728 6577872 -111284755 - AluSg/x SINE Alu -2 308 165 1781 186 3 0 chr9 6577877 6578173 -111284454 - AluJb SINE Alu -15 297 1 231 167 0 0 chr9 6578986 6579028 -111283599 + (TGAA)n Simple_repeat Simple_repeat 3 44 0 294 154 282 0 chr9 6579174 6579252 -111283375 + MER67A LTR ERV1 1 100 -443 2112 183 39 39 chr9 6579320 6579784 -111282843 + MER67A LTR ERV1 80 543 0 2083 129 17 0 chr9 6580226 6580520 -111282107 - AluSx SINE Alu -13 299 1 2166 139 0 0 chr9 6580522 6580825 -111281802 - AluSx SINE Alu -9 303 1 1634 188 50 10 chr9 6580825 6581003 -111281624 - AluJo SINE Alu -1 311 115 2227 95 0 7 chr9 6581003 6581297 -111281330 - AluSg SINE Alu -18 292 1 1634 188 50 10 chr9 6581297 6581416 -111281211 - AluJo SINE Alu -197 115 2 1019 340 52 38 chr9 6581878 6582636 -111279991 + ERVL LTR ERVL 420 1187 -3809 1285 309 73 54 chr9 6582788 6583764 -111278863 + ERVL LTR ERVL 1449 2471 -3183 2324 84 3 0 chr9 6583764 6584080 -111278547 - AluSq SINE Alu 0 318 2 1285 309 73 54 chr9 6584080 6584221 -111278406 + ERVL LTR ERVL 2471 2608 -3046 2300 90 0 34 chr9 6584317 6584639 -111277988 + AluSx SINE Alu 1 311 -1 726 312 26 26 chr9 6585751 6586020 -111276607 - MER115 DNA AcHobo -391 302 34 184 342 165 13 chr9 6586025 6586183 -111276444 - L2 LINE L2 -378 2936 2755 252 130 0 0 chr9 6586926 6586972 -111275655 + (T)n Simple_repeat Simple_repeat 1 46 0 744 258 97 5 chr9 6587972 6588189 -111274438 + MIR SINE MIR 8 244 -18 744 157 58 8 chr9 6588267 6588388 -111274239 + FLAM_A SINE Alu 5 131 -2 2394 94 0 0 chr9 6589303 6589602 -111273025 - AluSg SINE Alu -11 299 1 1815 171 7 13 chr9 6590670 6590968 -111271659 - AluJo SINE Alu -14 298 3 2498 50 17 0 chr9 6591138 6591437 -111271190 + AluY SINE Alu 1 304 -7 290 194 16 16 chr9 6591761 6591823 -111270804 - MLT1B LTR MaLR -325 65 4 210 273 0 0 chr9 6591825 6591869 -111270758 - L2 LINE L2 -307 3006 2963 352 257 20 20 chr9 6591970 6592071 -111270556 + MIR SINE MIR 11 111 -151 1119 206 47 117 chr9 6592072 6592542 -111270085 - MER39 LTR ERV1 -2 705 269 932 149 0 37 chr9 6592587 6592748 -111269879 - FRAM SINE Alu -4 172 18 322 253 0 13 chr9 6592762 6592837 -111269790 - MER39 LTR ERV1 -633 74 1 530 292 13 0 chr9 6592837 6592991 -111269636 + MIR SINE MIR 107 262 0 1401 163 45 45 chr9 6593573 6593756 -111268871 - AluJo SINE Alu -17 295 110 1786 109 70 4 chr9 6593756 6594013 -111268614 + AluSx SINE Alu 1 274 -38 1401 163 45 45 chr9 6594013 6594118 -111268509 - AluJo SINE Alu -201 111 7 468 282 10 0 chr9 6594123 6594226 -111268401 + L2 LINE L2 3210 3313 0 6203 233 33 20 chr9 6594748 6596030 -111266597 - L1M4 LINE L1 -2075 4307 2990 2273 104 0 0 chr9 6596030 6596319 -111266308 - AluY SINE Alu -22 289 1 6203 233 33 20 chr9 6596319 6596879 -111265748 - L1M4 LINE L1 -3392 2990 2439 11243 170 93 62 chr9 6596889 6597076 -111265551 - L1MA4 LINE L1 -2 7319 7139 2416 67 3 3 chr9 6597076 6597373 -111265254 + AluY SINE Alu 1 297 -14 11243 170 93 62 chr9 6597373 6598561 -111264066 - L1MA4 LINE L1 -182 7139 5989 1947 158 0 13 chr9 6598561 6598877 -111263750 - AluJb SINE Alu 0 312 1 11243 170 93 62 chr9 6598877 6598988 -111263639 - L1MA4 LINE L1 -1332 5989 5883 1687 186 3 37 chr9 6598988 6599311 -111263316 + AluJo SINE Alu 1 312 0 11243 170 93 62 chr9 6599311 6599468 -111263159 - L1MA4 LINE L1 -1438 5883 5732 860 169 0 0 chr9 6599468 6599598 -111263029 - FLAM_C SINE Alu -11 132 3 11243 170 93 62 chr9 6599598 6601626 -111261001 - L1MA4 LINE L1 -1589 5732 3405 226 204 82 20 chr9 6601623 6601672 -111260955 - L1MA4 LINE L1 -6236 932 881 * 4310 236 54 2 chr9 6601673 6602573 -111260054 - L1MA4 LINE L1 -6216 952 6 40946 71 7 4 chr9 6602577 6608707 -111253920 - L1PA5 LINE L1 -1 6153 3 9064 138 51 88 chr9 6608707 6609008 -111253619 - L1M4 LINE L1 -3931 2453 2142 2376 96 0 13 chr9 6609008 6609322 -111253305 + AluY SINE Alu 1 310 -1 9064 138 51 88 chr9 6609322 6611560 -111251067 - L1M4 LINE L1 -4242 2142 14 1199 181 188 19 chr9 6612019 6612328 -111250299 - MLT1A1 LTR MaLR 0 365 5 319 316 85 69 chr9 6612851 6613308 -111249319 + L2 LINE L2 2616 3090 -182 21 0 0 0 chr9 6613710 6613731 -111248896 + AT_rich Low_complexity Low_complexity 1 21 0 679 198 93 0 chr9 6617609 6617771 -111244856 + L1 LINE L1 4170 4346 -1800 2871 10 0 0 chr9 6617774 6618085 -111244542 + AluYa5 SINE Alu 1 311 0 5195 118 7 23 chr9 6618088 6618951 -111243676 + L1PA16 LINE L1 5317 6165 -1 2044 178 18 13 chr9 6620958 6621341 -111241286 + MSTD LTR MaLR 1 385 -11 1218 152 107 49 chr9 6621815 6622093 -111240534 - AluJb SINE Alu 0 318 27 1865 173 84 13 chr9 6622387 6622780 -111239847 - MSTB LTR MaLR -4 422 2 594 183 40 40 chr9 6622783 6622909 -111239718 + FLAM_C SINE Alu 1 126 -17 207 69 0 0 chr9 6622910 6622939 -111239688 + (TTA)n Simple_repeat Simple_repeat 2 30 0 13924 198 47 18 chr9 6622939 6625926 -111236701 - L1PB1 LINE L1 -8 6859 3961 2277 109 0 0 chr9 6625926 6626229 -111236398 - AluSx SINE Alu -9 303 1 13924 198 47 18 chr9 6626229 6626449 -111236178 - L1PB1 LINE L1 -2906 3961 3749 2172 98 14 0 chr9 6626449 6626736 -111235891 - AluSc SINE Alu -16 293 3 13924 198 47 18 chr9 6626736 6627631 -111234996 - L1PB1 LINE L1 -3118 3749 2882 207 69 0 0 chr9 6627631 6627660 -111234967 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 13924 198 47 18 chr9 6627660 6630141 -111232486 - L1PB1 LINE L1 -3985 2882 1 688 133 38 0 chr9 6630187 6630292 -111232335 + FRAM SINE Alu 47 155 -21 21 36 0 0 chr9 6630292 6630320 -111232307 + AT_rich Low_complexity Low_complexity 1 28 0 255 226 0 0 chr9 6630345 6630407 -111232220 - HsTC2 DNA Tc2 -1836 62 1 532 227 102 6 chr9 6630647 6630823 -111231804 - L1ME3A LINE L1 -219 5951 5759 233 310 128 75 chr9 6631007 6631101 -111231526 + L2 LINE L2 2824 2912 -360 2023 136 16 48 chr9 6631101 6631477 -111231150 + THE1B LTR MaLR 1 364 0 233 310 128 75 chr9 6631477 6631608 -111231019 + L2 LINE L2 2912 3061 -211 283 150 0 0 chr9 6632131 6632191 -111230436 - L1MC3 LINE L1 0 7785 7726 370 184 178 55 chr9 6632337 6632500 -111230127 - L1ME LINE L1 -317 5804 5622 359 265 138 5 chr9 6632506 6632695 -111229932 - L1ME LINE L1 -517 5604 5391 1278 228 71 63 chr9 6632761 6633270 -111229357 - HAL1 LINE L1 -1992 515 3 241 224 15 15 chr9 6634471 6634538 -111228089 - MLT1L LTR MaLR -534 81 15 3326 234 109 26 chr9 6634558 6635727 -111226900 + HAL1 LINE L1 702 1967 -540 1600 109 9 0 chr9 6635991 6636212 -111226415 - AluSq SINE Alu -14 299 77 692 203 24 0 chr9 6636774 6636897 -111225730 + AluJb SINE Alu 141 266 -46 528 220 165 11 chr9 6636999 6637157 -111225470 - MER5A DNA MER1_type 0 189 4 501 290 10 62 chr9 6637535 6637728 -111224899 - MER5A DNA MER1_type -6 183 1 205 271 85 0 chr9 6637953 6638012 -111224615 - MIR3 SINE MIR -3 205 142 420 274 42 38 chr9 6638123 6638290 -111224337 - MIR3 SINE MIR -36 172 4 840 125 8 16 chr9 6638672 6638800 -111223827 + FLAM_C SINE Alu 7 133 -10 2329 110 0 16 chr9 6638806 6639123 -111223504 + AluSx SINE Alu 1 312 0 2126 134 3 0 chr9 6639685 6639983 -111222644 + AluJb SINE Alu 1 299 -13 2087 175 35 22 chr9 6639983 6640389 -111222238 + MLT2D LTR ERVL 4 414 0 265 353 15 45 chr9 6640519 6640652 -111221975 + L2 LINE L2 3144 3272 0 1053 277 95 25 chr9 6640712 6641082 -111221545 + L1ME LINE L1 4579 4922 -1240 2194 109 0 0 chr9 6641082 6641366 -111221261 - AluSx SINE Alu -24 288 5 1053 277 95 25 chr9 6641366 6642094 -111220533 + L1ME LINE L1 4922 5759 -403 41836 44 1 3 chr9 6643063 6649229 -111213398 - L1PA4 LINE L1 -3 6152 1 29 60 0 0 chr9 6649244 6649294 -111213333 + AT_rich Low_complexity Low_complexity 1 50 0 2051 118 0 0 chr9 6649434 6649705 -111212922 + AluSx SINE Alu 24 294 -18 237 259 0 0 chr9 6649857 6649911 -111212716 + MER21B LTR ERV1 40 93 -770 2158 94 0 60 chr9 6649911 6650229 -111212398 + AluSc SINE Alu 1 299 -10 1137 157 20 0 chr9 6650238 6650435 -111212192 + L1PB3 LINE L1 5953 6153 -1 1554 214 38 17 chr9 6650516 6651017 -111211610 + MER21B LTR ERV1 206 756 -107 2133 135 26 0 chr9 6651309 6651613 -111211014 - AluSx SINE Alu 0 312 1 252 0 0 0 chr9 6653374 6653402 -111209225 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 360 327 19 0 chr9 6653837 6653941 -111208686 - L2 LINE L2 -5 3267 3162 378 0 0 0 chr9 6654054 6654096 -111208531 + (TG)n Simple_repeat Simple_repeat 2 43 0 1364 120 16 38 chr9 6654119 6654251 -111208376 - L1MC1 LINE L1 -440 5893 5893 2330 112 0 6 chr9 6654251 6654564 -111208063 - AluSx SINE Alu -1 311 1 1364 120 16 38 chr9 6654564 6654796 -111207831 - L1MC1 LINE L1 -440 5893 5657 790 334 47 31 chr9 6654785 6655190 -111207437 - L1M4 LINE L1 -1109 5037 4640 * 2196 108 0 44 chr9 6655190 6655358 -111207269 - AluSx SINE Alu -11 301 152 2469 82 0 22 chr9 6655358 6655673 -111206954 - AluY SINE Alu -3 308 1 2196 108 0 44 chr9 6655673 6655819 -111206808 - AluSx SINE Alu -160 152 1 790 334 47 31 chr9 6655819 6656417 -111206210 - L1M4 LINE L1 -1506 4640 4018 565 313 51 47 chr9 6656454 6657000 -111205627 - L1M4 LINE L1 -2475 3671 3129 2176 127 7 0 chr9 6657000 6657307 -111205320 - AluSx SINE Alu -3 309 1 565 313 51 47 chr9 6657307 6657428 -111205199 - L1M4 LINE L1 -3017 3129 3010 1715 209 64 43 chr9 6657428 6657896 -111204731 + MER31A LTR ERV1 4 481 -4 565 313 51 47 chr9 6657896 6658491 -111204136 - L1M4 LINE L1 -3136 3010 2402 297 73 0 0 chr9 6658566 6658607 -111204020 - HERVL LTR ERVL -4275 1379 1339 6379 132 14 13 chr9 6658608 6660644 -111201983 + L1MA2 LINE L1 4266 6304 0 2491 60 0 7 chr9 6660964 6661266 -111201361 - AluY SINE Alu -11 300 1 231 36 0 0 chr9 6661273 6661301 -111201326 + (T)n Simple_repeat Simple_repeat 1 28 0 1767 159 43 7 chr9 6661715 6662016 -111200611 - AluJb SINE Alu 0 312 1 234 279 0 15 chr9 6662016 6662084 -111200543 - MER5A DNA MER1_type -113 76 10 397 257 86 29 chr9 6662113 6662253 -111200374 - MIR SINE MIR -75 187 40 1168 152 15 10 chr9 6662285 6662482 -111200145 - L1MC2 LINE L1 -8 6336 6139 249 191 79 11 chr9 6662486 6662559 -111200068 + Tigger3(Golem) DNA MER2_type 240 321 -910 212 57 0 29 chr9 6662559 6662594 -111200033 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 249 191 79 11 chr9 6662594 6662609 -111200018 + Tigger3(Golem) DNA MER2_type 321 334 -897 1081 119 57 23 chr9 6664008 6664185 -111198442 + MER46A DNA MER2_type 54 236 0 30 0 0 0 chr9 6664371 6664401 -111198226 + AT_rich Low_complexity Low_complexity 1 30 0 2007 87 42 19 chr9 6666008 6666318 -111196309 + Tigger3b DNA MER2_type 343 659 -572 1368 158 14 0 chr9 6666331 6666553 -111196074 - Tigger3b DNA MER2_type -1006 225 1 2449 146 55 55 chr9 6666553 6667041 -111195586 - L1MC2 LINE L1 -410 5923 5436 583 172 31 2 chr9 6667316 6667429 -111195198 - L1ME1 LINE L1 -2 6332 6058 225 152 0 0 chr9 6667429 6667462 -111195165 - MER3 DNA MER1_type -160 49 17 372 177 210 18 chr9 6667462 6667584 -111195043 - L1ME1 LINE L1 -149 6017 5877 451 237 17 0 chr9 6668116 6668234 -111194393 - L1ME1 LINE L1 -1084 5062 4943 211 125 0 71 chr9 6668264 6668320 -111194307 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 427 252 17 0 chr9 6668396 6668515 -111194112 - L1MC2 LINE L1 -1083 5063 4943 210 168 0 69 chr9 6668515 6668616 -111194011 + CT-rich Low_complexity Low_complexity 1 94 0 1432 236 64 12 chr9 6668619 6669038 -111193589 - L1MC2 LINE L1 -1199 4947 4507 713 180 47 0 chr9 6669481 6669609 -111193018 - AluJo SINE Alu -176 136 3 3222 141 37 8 chr9 6670203 6670713 -111191914 + LTR45 LTR ERV1 1 525 0 263 322 76 64 chr9 6670970 6671141 -111191486 + LTR16C LTR ERVL 78 250 -241 887 272 35 31 chr9 6671146 6671436 -111191191 + LTR16C LTR ERVL 201 491 0 5079 156 14 34 chr9 6671801 6671892 -111190735 + L1MB3 LINE L1 5173 5264 -919 2231 122 3 0 chr9 6671892 6672196 -111190431 + AluSx SINE Alu 1 305 -7 2107 116 0 7 chr9 6672196 6672489 -111190138 + AluSx SINE Alu 1 292 -20 5079 156 14 34 chr9 6672489 6672506 -111190121 + L1MB3 LINE L1 5263 5279 -904 2558 53 0 0 chr9 6672506 6672805 -111189822 + AluY SINE Alu 1 299 -12 5079 156 14 34 chr9 6672805 6673351 -111189276 + L1MB3 LINE L1 5279 5807 -376 1751 179 0 3 chr9 6673351 6673648 -111188979 + AluJb SINE Alu 1 296 -16 5079 156 14 34 chr9 6673648 6674016 -111188611 + L1MB3 LINE L1 5807 6181 -2 631 145 36 114 chr9 6674936 6675129 -111187498 - MER5B DNA MER1_type 0 178 1 234 208 14 69 chr9 6675608 6675680 -111186947 - MER5A DNA MER1_type -113 76 9 366 85 0 0 chr9 6675791 6675850 -111186777 + (TATG)n Simple_repeat Simple_repeat 2 60 0 421 196 101 101 chr9 6675908 6675972 -111186655 - MER5A DNA MER1_type 0 189 126 2402 93 3 0 chr9 6675972 6676284 -111186343 + AluSp SINE Alu 1 313 0 421 196 101 101 chr9 6676284 6676408 -111186219 - MER5A DNA MER1_type -62 127 1 685 274 41 53 chr9 6676588 6676939 -111185688 + MLT1G1 LTR MaLR 1 389 -206 300 185 111 0 chr9 6676996 6677077 -111185550 + MLT1G1 LTR MaLR 501 590 0 208 269 0 0 chr9 6677277 6677329 -111185298 + (TAA)n Simple_repeat Simple_repeat 3 54 0 530 198 0 0 chr9 6677332 6677428 -111185199 - MIR SINE MIR -29 233 138 544 208 8 54 chr9 6677641 6677771 -111184856 + FLAM_A SINE Alu 1 124 -9 29 0 0 0 chr9 6678128 6678157 -111184470 + AT_rich Low_complexity Low_complexity 1 29 0 267 31 0 0 chr9 6679366 6679398 -111183229 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1732 166 18 3 chr9 6679401 6679685 -111182942 - AluJb SINE Alu -24 288 1 894 75 17 0 chr9 6679810 6679930 -111182697 + AluSp/q SINE Alu 181 302 -11 1464 88 0 10 chr9 6679930 6680122 -111182505 + AluY SINE Alu 1 190 -121 690 0 0 0 chr9 6680122 6680198 -111182429 + AluY SINE Alu 57 132 -179 2072 115 0 3 chr9 6680202 6680498 -111182129 + AluY SINE Alu 1 295 -16 2478 34 7 17 chr9 6680504 6680832 -111181795 + AluY SINE Alu 1 311 0 336 200 24 12 chr9 6681415 6681500 -111181127 - MIR SINE MIR -121 141 56 1694 169 0 44 chr9 6681639 6681958 -111180669 + AluJb SINE Alu 1 305 -7 886 224 0 0 chr9 6682009 6682174 -111180453 + FRAM SINE Alu 1 164 -12 1932 99 4 4 chr9 6682176 6682439 -111180188 + AluSq SINE Alu 1 263 -50 275 193 0 0 chr9 6682541 6682598 -111180029 + AluSq SINE Alu 245 301 -1 195 42 0 0 chr9 6682852 6682876 -111179751 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2099 131 3 3 chr9 6683030 6683327 -111179300 - AluSp SINE Alu -16 297 1 2474 81 0 7 chr9 6683327 6683634 -111178993 - AluSx SINE Alu -7 305 1 474 18 0 0 chr9 6683640 6683695 -111178932 + (TTA)n Simple_repeat Simple_repeat 2 56 0 1987 101 4 0 chr9 6683699 6683956 -111178671 - AluSx SINE Alu -32 280 23 1975 136 3 7 chr9 6683964 6684279 -111178348 - AluSx SINE Alu 0 314 1 2288 84 3 0 chr9 6684811 6685130 -111177497 - AluSx SINE Alu 0 320 1 1424 206 17 24 chr9 6685138 6685434 -111177193 - AluJo SINE Alu -18 294 1 1032 201 14 5 chr9 6685442 6685651 -111176976 - AluJb SINE Alu 0 312 102 555 147 147 0 chr9 6685651 6685753 -111176874 + FLAM_C SINE Alu 1 117 -26 2001 154 0 3 chr9 6685766 6686077 -111176550 - AluJb SINE Alu -2 310 1 606 213 12 50 chr9 6686254 6686405 -111176222 + AluJb SINE Alu 157 303 -9 1800 169 23 10 chr9 6686405 6686713 -111175914 + AluSx SINE Alu 1 312 0 2404 93 0 0 chr9 6686903 6687205 -111175422 + AluSg1 SINE Alu 1 302 -7 495 236 260 24 chr9 6687205 6687413 -111175214 + Zaphod DNA AcHobo 383 639 -3392 2322 99 3 3 chr9 6687413 6687715 -111174912 + AluSx SINE Alu 1 302 -10 1378 53 0 6 chr9 6687770 6687939 -111174688 + AluY SINE Alu 136 303 -8 254 182 18 0 chr9 6687971 6688026 -111174601 + Zaphod DNA AcHobo 673 728 -3303 2108 119 10 0 chr9 6688026 6688321 -111174306 + AluSx SINE Alu 1 298 -14 2179 179 87 50 chr9 6688330 6688789 -111173838 + MER21A LTR ERV1 386 861 -70 1045 186 6 0 chr9 6688789 6688972 -111173655 - AluSg/x SINE Alu -8 302 119 567 168 71 9 chr9 6689248 6689361 -111173266 + FLAM_C SINE Alu 12 131 -12 23 0 0 0 chr9 6689390 6689413 -111173214 + AT_rich Low_complexity Low_complexity 1 23 0 2214 109 0 7 chr9 6689417 6689711 -111172916 - AluSc SINE Alu -17 292 1 2381 74 0 0 chr9 6689716 6690024 -111172603 - AluY SINE Alu 0 308 1 893 186 47 131 chr9 6690030 6690390 -111172237 + MER34C LTR ERV1 256 585 0 2077 128 3 7 chr9 6690509 6690806 -111171821 - AluSx SINE Alu -16 296 1 2540 70 3 0 chr9 6691896 6692198 -111170429 - AluSx SINE Alu -9 303 1 207 0 0 0 chr9 6692210 6692233 -111170394 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2158 105 7 0 chr9 6692410 6692696 -111169931 - AluSg SINE Alu -21 289 2 2161 111 0 26 chr9 6692901 6693207 -111169420 - AluSx SINE Alu -14 298 1 23 33 0 0 chr9 6693913 6693943 -111168684 + AT_rich Low_complexity Low_complexity 1 30 0 1327 167 77 42 chr9 6694150 6694437 -111168190 + AluJo SINE Alu 1 297 -15 1941 142 10 10 chr9 6694457 6694753 -111167874 - AluSx SINE Alu -16 296 1 859 229 0 0 chr9 6694763 6694938 -111167689 - FAM SINE Alu 0 175 1 1210 107 6 0 chr9 6697186 6697345 -111165282 - AluSp SINE Alu -51 262 103 2225 102 9 19 chr9 6697596 6697911 -111164716 - AluSx SINE Alu 0 312 1 2365 99 0 0 chr9 6698127 6698421 -111164206 + AluSg SINE Alu 3 296 -14 261 0 0 0 chr9 6699069 6699098 -111163529 + (TA)n Simple_repeat Simple_repeat 2 30 0 2370 178 93 8 chr9 6699118 6699624 -111163003 + MER89 LTR ERV1 1 549 -10 226 280 28 28 chr9 6700264 6700371 -111162256 - L1ME4a LINE L1 -48 6073 5967 805 274 51 8 chr9 6700903 6701137 -111161490 + MIR SINE MIR 8 251 -11 2311 105 0 3 chr9 6701661 6701966 -111160661 + AluSx SINE Alu 5 308 -4 1783 179 3 3 chr9 6702296 6702608 -111160019 - AluJo SINE Alu 0 312 1 2257 105 13 0 chr9 6703164 6703470 -111159157 + AluSx SINE Alu 1 310 -2 195 42 0 0 chr9 6703474 6703498 -111159129 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 461 154 0 0 chr9 6705142 6705207 -111157420 - HERVL18 LTR ERVL -3265 2782 2718 * 1197 155 64 2 chr9 6705204 6705464 -111157163 - HERVL18 LTR ERVL -3595 2452 2119 2697 196 14 26 chr9 6705489 6706368 -111156259 - HERVL18 LTR ERVL -4425 1622 56 385 256 2 2 chr9 6706469 6706559 -111156068 - AluJ/FLAM SINE Alu -227 75 1 2435 86 3 0 chr9 6706676 6706977 -111155650 + AluSp SINE Alu 1 302 -11 1192 38 0 0 chr9 6706977 6707109 -111155518 + AluY SINE Alu 1 132 -179 2357 71 0 7 chr9 6707113 6707410 -111155217 + AluY SINE Alu 1 295 -16 2230 42 46 18 chr9 6707410 6707727 -111154900 + AluY SINE Alu 1 311 0 336 200 24 12 chr9 6708310 6708395 -111154232 - MIR SINE MIR -121 141 56 1744 163 0 44 chr9 6708534 6708853 -111153774 + AluJb SINE Alu 1 305 -7 904 218 0 0 chr9 6708904 6709069 -111153558 + FRAM SINE Alu 1 164 -12 370 64 0 0 chr9 6709071 6709118 -111153509 + Alu SINE Alu 1 47 -255 23 0 0 0 chr9 6709236 6709259 -111153368 + AT_rich Low_complexity Low_complexity 1 23 0 815 173 0 0 chr9 6710170 6710303 -111152324 + AluJo/FLAM SINE Alu 1 133 -169 1441 127 5 9 chr9 6710306 6710519 -111152108 + AluSp SINE Alu 1 212 -101 452 240 202 8 chr9 6710535 6710664 -111151963 - AluJo SINE Alu -38 274 121 553 44 15 0 chr9 6710664 6710732 -111151895 - L1PA8 LINE L1 -319 5853 5785 2108 166 44 70 chr9 6710733 6711051 -111151576 - Tigger7 DNA MER2_type -308 425 119 2381 89 10 0 chr9 6711051 6711355 -111151272 + AluSp SINE Alu 1 307 -6 2108 166 44 70 chr9 6711355 6711464 -111151163 - Tigger7 DNA MER2_type -614 119 9 394 310 84 0 chr9 6711488 6711643 -111150984 - L1MCb LINE L1 -5308 737 570 486 286 34 7 chr9 6711735 6711882 -111150745 - L1MCb LINE L1 -5471 574 424 279 176 0 44 chr9 6711884 6711952 -111150675 - L1MCb LINE L1 -5772 273 209 2068 127 0 0 chr9 6711991 6712274 -111150353 - AluSx SINE Alu -16 296 14 405 182 0 0 chr9 6712279 6712356 -111150271 - AluJ/FRAM SINE Alu -7 305 229 671 61 0 0 chr9 6712456 6712538 -111150089 - AluY SINE Alu -228 83 2 * 741 164 16 0 chr9 6712538 6712657 -111149970 + AluSg/x SINE Alu 181 301 -9 1558 162 4 0 chr9 6712672 6712937 -111149690 + AluJb SINE Alu 16 281 -31 916 136 8 0 chr9 6712937 6712976 -111149651 + AluJo SINE Alu 16 320 0 963 280 15 19 chr9 6712981 6713249 -111149378 + LTR16B LTR ERVL 109 375 -89 400 243 0 0 chr9 6713909 6713983 -111148644 + FRAM SINE Alu 77 150 -26 1297 226 7 13 chr9 6714001 6714311 -111148316 + AluJb SINE Alu 3 310 -2 1339 151 29 59 chr9 6714334 6714431 -111148196 + L1MC1 LINE L1 6059 6157 -176 2056 115 7 3 chr9 6714431 6714726 -111147901 + AluSx SINE Alu 1 296 -16 1339 151 29 59 chr9 6714726 6714900 -111147727 + L1MC1 LINE L1 6157 6322 -11 1779 150 10 10 chr9 6714901 6715201 -111147426 + AluJo SINE Alu 1 300 -12 1986 110 0 0 chr9 6715212 6715485 -111147142 + AluSx SINE Alu 3 275 -37 1883 97 6 61 chr9 6715515 6715826 -111146801 + AluSq SINE Alu 3 296 -17 1792 144 6 52 chr9 6715848 6716174 -111146453 - AluSx SINE Alu -1 311 1 716 124 66 25 chr9 6716262 6716383 -111146244 - FLAM_C SINE Alu -4 139 14 1836 153 3 16 chr9 6716862 6717175 -111145452 + AluSx SINE Alu 1 309 -3 1100 207 195 0 chr9 6717505 6717766 -111144861 + MER21B LTR ERV1 1 312 -551 1055 82 0 0 chr9 6717767 6717902 -111144725 + AluSq/x SINE Alu 1 135 -177 2296 74 0 0 chr9 6717902 6718199 -111144428 + AluY SINE Alu 1 297 -14 2403 168 85 78 chr9 6718208 6718667 -111143960 + MER21A LTR ERV1 386 851 -80 1830 148 3 23 chr9 6718667 6718977 -111143650 - AluSx SINE Alu -8 304 1 2403 168 85 78 chr9 6718977 6719059 -111143568 + MER21A LTR ERV1 851 931 0 2020 68 79 7 chr9 6719221 6719501 -111143126 - AluSp SINE Alu -13 300 1 2149 109 0 0 chr9 6719600 6719894 -111142733 - AluSg SINE Alu -15 295 2 194 125 0 25 chr9 6719945 6719985 -111142642 + (GAAAA)n Simple_repeat Simple_repeat 4 42 0 1922 117 11 3 chr9 6720060 6720369 -111142258 + AluSx SINE Alu 1 311 0 370 174 315 0 chr9 6720435 6720527 -111142100 + FLAM_A SINE Alu 1 121 -12 37 0 0 0 chr9 6720748 6720785 -111141842 + AT_rich Low_complexity Low_complexity 1 37 0 803 206 11 29 chr9 6720785 6720924 -111141703 + AluJo SINE Alu 1 138 -174 2335 78 0 0 chr9 6720924 6721219 -111141408 + AluSx SINE Alu 1 295 -17 803 206 11 29 chr9 6721219 6721254 -111141373 + AluJo SINE Alu 138 172 -140 267 115 39 167 chr9 6721256 6721319 -111141308 + FAM SINE Alu 116 185 -126 2038 125 0 0 chr9 6721319 6721616 -111141011 + AluSx SINE Alu 2 298 -14 809 135 0 8 chr9 6721617 6721750 -111140877 + FLAM_C SINE Alu 1 132 -1 267 115 39 167 chr9 6721750 6721762 -111140865 + FAM SINE Alu 161 173 -2 965 291 139 58 chr9 6721978 6722317 -111140310 + ERVL LTR ERVL 884 1194 -4460 1792 135 36 30 chr9 6722317 6722621 -111140006 + AluJb SINE Alu 3 308 -4 965 291 139 58 chr9 6722621 6723195 -111139432 + ERVL LTR ERVL 1194 1827 -3827 619 133 0 0 chr9 6723316 6723414 -111139213 + AluSg/x SINE Alu 209 306 -3 312 172 35 0 chr9 6723415 6723473 -111139154 + AluY SINE Alu 129 188 -113 753 149 8 22 chr9 6723523 6723657 -111138970 - FLAM_C SINE Alu 0 133 2 2100 110 0 0 chr9 6723672 6723962 -111138665 - AluSq SINE Alu -22 291 2 2355 61 3 0 chr9 6724020 6724313 -111138314 - AluY SINE Alu -17 294 1 957 191 60 101 chr9 6724315 6724681 -111137946 + MER34C LTR ERV1 235 585 0 1998 118 3 7 chr9 6724800 6725096 -111137531 - AluSx SINE Alu -17 295 1 2250 86 3 0 chr9 6726185 6726486 -111136141 - AluSx SINE Alu -10 302 1 207 0 0 0 chr9 6726498 6726521 -111136106 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2037 105 7 0 chr9 6726698 6726984 -111135643 - AluSg SINE Alu -21 289 2 2056 108 0 23 chr9 6727189 6727494 -111135133 - AluSx SINE Alu -14 298 1 263 254 228 9 chr9 6728164 6728278 -111134349 + MIR SINE MIR 82 220 -42 387 60 0 0 chr9 6728323 6728373 -111134254 + (TCC)n Simple_repeat Simple_repeat 2 51 0 1767 139 21 0 chr9 6728413 6728701 -111133926 + AluJb SINE Alu 8 301 -11 878 164 18 12 chr9 6728854 6729025 -111133602 + AluJo SINE Alu 126 297 -15 208 222 42 69 chr9 6729101 6729173 -111133454 + MIR SINE MIR 193 262 0 2143 48 44 0 chr9 6730135 6730432 -111132195 - AluY SINE Alu 0 309 1 823 195 84 97 chr9 6731662 6731970 -111130657 + MER2 DNA MER2_type 42 345 0 305 340 113 5 chr9 6732012 6732215 -111130412 - MIR SINE MIR -18 244 20 314 89 0 0 chr9 6732428 6732473 -111130154 - MADE1 DNA Mariner -4 76 32 2071 89 14 0 chr9 6732473 6732764 -111129863 + AluSx SINE Alu 1 295 -17 1208 128 0 0 chr9 6732766 6732946 -111129681 + AluSq SINE Alu 134 313 0 951 199 0 0 chr9 6733072 6733238 -111129389 - AluJb SINE Alu -13 299 134 1883 106 65 0 chr9 6733238 6733513 -111129114 - AluSx SINE Alu -19 293 1 235 284 43 9 chr9 6733519 6733635 -111128992 - L1ME LINE L1 -338 5783 5664 621 118 0 0 chr9 6733779 6733864 -111128763 + AluY SINE Alu 207 291 -20 1410 165 120 39 chr9 6734033 6734206 -111128421 - MSTD LTR MaLR -2 394 236 2008 121 7 3 chr9 6734206 6734503 -111128124 - AluSx SINE Alu -14 298 1 1410 165 120 39 chr9 6734503 6734638 -111127989 - MSTD LTR MaLR -160 236 61 418 269 45 87 chr9 6734753 6735002 -111127625 + MIR SINE MIR 23 260 -2 2099 96 0 53 chr9 6735548 6735870 -111126757 - AluSg SINE Alu -5 305 1 1626 176 0 20 chr9 6735873 6736174 -111126453 - AluJo SINE Alu -17 295 1 192 395 45 13 chr9 6736174 6736331 -111126296 + L2 LINE L2 2517 2678 -636 2162 111 3 0 chr9 6736363 6736670 -111125957 + AluSp SINE Alu 1 308 -5 2194 100 0 10 chr9 6737159 6737459 -111125168 - AluSg SINE Alu -13 297 1 2182 112 0 6 chr9 6737545 6737858 -111124769 - AluSx SINE Alu -1 311 1 373 327 79 16 chr9 6737858 6738148 -111124479 + L2 LINE L2 2772 3081 -191 629 212 80 7 chr9 6738221 6738372 -111124255 + AluJb SINE Alu 134 295 -17 1474 115 0 0 chr9 6738913 6739122 -111123505 + AluSg/x SINE Alu 92 300 -10 1906 155 0 0 chr9 6739274 6739583 -111123044 + AluSx SINE Alu 1 309 -3 416 291 147 103 chr9 6739588 6739995 -111122632 + L1MEd LINE L1 66 513 -5606 1992 103 26 0 chr9 6739995 6740318 -111122309 + AluSg SINE Alu 1 330 0 416 291 147 103 chr9 6740318 6740541 -111122086 + L1MEd LINE L1 513 725 -5394 1136 189 12 87 chr9 6740550 6740698 -111121929 + AluJb SINE Alu 5 116 -196 2125 94 3 26 chr9 6740698 6741006 -111121621 + AluSq SINE Alu 1 301 -12 1136 189 12 87 chr9 6741006 6741190 -111121437 + AluJb SINE Alu 116 312 0 376 192 50 20 chr9 6741261 6741360 -111121267 + L1MC5 LINE L1 7336 7437 -524 604 274 63 83 chr9 6741381 6741613 -111121014 - L1 LINE L1 -2084 4062 3827 1516 79 26 40 chr9 6741613 6741840 -111120787 + AluSx SINE Alu 1 224 -88 604 274 63 83 chr9 6741840 6742269 -111120358 - L1 LINE L1 -2319 3827 3442 1837 129 33 0 chr9 6743334 6743636 -111118991 - AluJb SINE Alu 0 312 1 648 105 0 11 chr9 6743761 6743856 -111118771 + FLAM_C SINE Alu 34 127 -16 2099 110 7 0 chr9 6743864 6744174 -111118453 + AluSp SINE Alu 1 312 -1 2489 47 0 0 chr9 6744403 6744701 -111117926 - AluY SINE Alu -13 298 1 202 303 210 12 chr9 6744761 6744923 -111117704 + MIR SINE MIR 48 241 -21 1504 204 92 36 chr9 6745007 6745426 -111117201 + MER39 LTR ERV1 269 565 0 2255 100 0 0 chr9 6745490 6745799 -111116828 - AluSx SINE Alu -3 309 1 2141 103 3 10 chr9 6745831 6746142 -111116485 + AluSx SINE Alu 3 311 -1 195 42 0 0 chr9 6746387 6746411 -111116216 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1992 128 3 3 chr9 6746565 6746862 -111115765 - AluSp SINE Alu -16 297 1 2121 114 0 10 chr9 6746862 6747170 -111115457 - AluSx SINE Alu -7 305 1 1959 97 0 0 chr9 6747176 6747490 -111115137 - AluSc SINE Alu 0 336 23 1669 176 0 0 chr9 6747498 6747811 -111114816 - AluJb SINE Alu 0 313 1 2161 84 3 0 chr9 6748343 6748662 -111113965 - AluSx SINE Alu 0 320 1 1319 209 17 24 chr9 6748670 6748966 -111113661 - AluJo SINE Alu -18 294 1 966 201 14 5 chr9 6748974 6749183 -111113444 - AluJb SINE Alu 0 312 102 565 147 147 0 chr9 6749183 6749285 -111113342 + FLAM_C SINE Alu 1 117 -26 1882 154 0 3 chr9 6749298 6749609 -111113018 - AluJb SINE Alu -2 310 1 2188 92 3 7 chr9 6749676 6749981 -111112646 + AluSx SINE Alu 1 304 -8 1542 170 44 27 chr9 6750271 6750634 -111111993 - L1MA7 LINE L1 -100 6200 5825 974 166 0 12 chr9 6750641 6750804 -111111823 - AluJb SINE Alu -18 294 134 2146 105 0 0 chr9 6750804 6751098 -111111529 - AluSc SINE Alu -15 294 1 2060 124 0 3 chr9 6751103 6751401 -111111226 - AluSx SINE Alu -15 297 1 294 202 11 79 chr9 6751649 6751738 -111110889 - MER34B LTR ERV1 -448 117 35 259 161 18 18 chr9 6751901 6751957 -111110670 - AluSp SINE Alu -133 170 115 21 0 0 0 chr9 6752125 6752146 -111110481 + AT_rich Low_complexity Low_complexity 1 21 0 1890 155 0 0 chr9 6752146 6752442 -111110185 + AluSx SINE Alu 1 296 -16 1510 157 20 38 chr9 6752455 6752620 -111110007 - AluJo SINE Alu -14 298 139 2211 113 3 0 chr9 6752620 6752931 -111109696 - AluSx SINE Alu 0 312 1 1510 157 20 38 chr9 6752931 6753058 -111109569 - AluJo SINE Alu -173 139 11 754 133 18 0 chr9 6753185 6753298 -111109329 + AluSq/x SINE Alu 2 116 -196 1479 96 58 139 chr9 6753302 6753323 -111109304 - MER4C-int LTR ERV1 -4278 1268 1247 2199 114 0 0 chr9 6753323 6753630 -111108997 + AluSq SINE Alu 1 307 -6 1479 96 58 139 chr9 6753630 6753868 -111108759 - MER4C-int LTR ERV1 -4299 1247 991 2042 111 14 0 chr9 6753868 6754165 -111108462 - AluSg SINE Alu -9 301 1 1479 96 58 139 chr9 6754165 6754224 -111108403 - MER4C-int LTR ERV1 -4555 991 511 235 178 0 44 chr9 6754244 6754289 -111108338 - LTR49 LTR ERV1 -282 313 271 309 143 0 0 chr9 6754356 6754405 -111108222 - MER4C-int LTR ERV1 -5799 799 751 713 229 227 24 chr9 6754416 6754863 -111107764 - MER4C-int LTR ERV1 -6009 589 1 489 144 264 8 chr9 6754884 6755009 -111107618 - MER4C LTR ERV1 -18 447 291 358 195 98 89 chr9 6755064 6755187 -111107440 - MER4A LTR ERV1 -322 342 219 1800 86 89 51 chr9 6755187 6755479 -111107148 + AluSq SINE Alu 1 303 -10 412 16 16 0 chr9 6755501 6755562 -111107065 - AluY SINE Alu -1 309 248 2562 39 0 0 chr9 6755662 6755967 -111106660 - AluY SINE Alu -6 305 1 983 149 11 17 chr9 6755988 6756163 -111106464 - MER4A LTR ERV1 -490 174 1 706 168 61 26 chr9 6756204 6756420 -111106207 + MLT1A1 LTR MaLR 207 365 0 1641 138 145 59 chr9 6757093 6757305 -111105322 - LTR54B LTR ERV1 -4 494 302 1953 107 10 24 chr9 6757305 6757603 -111105024 - AluSx SINE Alu -18 294 1 1641 138 145 59 chr9 6757603 6757711 -111104916 - LTR54B LTR ERV1 -196 302 205 2210 108 7 0 chr9 6757711 6758018 -111104609 - AluSc SINE Alu 0 309 1 1641 138 145 59 chr9 6758018 6758151 -111104476 - LTR54B LTR ERV1 -293 205 1 1125 268 135 39 chr9 6758154 6758359 -111104268 + Zaphod DNA AcHobo 186 370 -3661 2265 92 0 3 chr9 6758359 6758663 -111103964 + AluSg SINE Alu 1 303 -7 1125 268 135 39 chr9 6758663 6758871 -111103756 + Zaphod DNA AcHobo 370 639 -3392 2191 99 3 3 chr9 6758871 6759173 -111103454 + AluSx SINE Alu 1 302 -10 1321 53 0 6 chr9 6759228 6759399 -111103228 + AluY SINE Alu 136 305 -6 389 176 73 94 chr9 6759420 6759485 -111103142 + Zaphod DNA AcHobo 663 728 -3303 2068 108 10 0 chr9 6759485 6759780 -111102847 + AluSx SINE Alu 1 298 -14 389 176 73 94 chr9 6759780 6759866 -111102761 + Zaphod DNA AcHobo 728 810 -3221 881 159 38 6 chr9 6759866 6760023 -111102604 - FRAM SINE Alu -4 162 1 389 176 73 94 chr9 6760023 6760103 -111102524 + Zaphod DNA AcHobo 810 890 -3141 2152 96 3 3 chr9 6760106 6760399 -111102228 + AluSq SINE Alu 1 293 -20 21 57 0 0 chr9 6760408 6760443 -111102184 + AT_rich Low_complexity Low_complexity 1 35 0 241 180 0 20 chr9 6760447 6760497 -111102130 - LTR59 LTR ERV1 -78 519 471 321 155 12 36 chr9 6760568 6760652 -111101975 + Zaphod DNA AcHobo 909 990 -3041 1065 111 0 0 chr9 6760666 6760819 -111101808 - AluSp/q SINE Alu 0 313 161 2192 102 16 0 chr9 6760866 6761169 -111101458 + AluSx SINE Alu 1 308 -4 1678 152 47 7 chr9 6761216 6761513 -111101114 + AluJb SINE Alu 1 309 -3 208 200 213 12 chr9 6761558 6761638 -111100989 + MIR SINE MIR 122 217 -45 778 263 50 93 chr9 6761672 6761922 -111100705 - L2 LINE L2 -43 3270 3048 2066 100 0 62 chr9 6761922 6762243 -111100384 - AluSx SINE Alu -11 301 1 778 263 50 93 chr9 6762243 6762456 -111100171 - L2 LINE L2 -265 3048 2827 423 233 100 0 chr9 6762456 6762576 -111100051 + LTR33 LTR ERVL 2 133 -388 649 241 120 49 chr9 6762668 6762934 -111099693 + LTR33 LTR ERVL 235 519 -2 2323 252 90 26 chr9 6762939 6763433 -111099194 - L2 LINE L2 -498 2816 2254 2494 61 0 0 chr9 6763433 6763744 -111098883 + AluY SINE Alu 1 311 0 2323 252 90 26 chr9 6763744 6764012 -111098615 - L2 LINE L2 -1060 2254 2005 736 147 133 21 chr9 6764026 6764169 -111098458 + AluSg/x SINE Alu 141 299 -13 2257 47 40 7 chr9 6764169 6764470 -111098157 + AluY SINE Alu 1 311 0 1182 96 0 0 chr9 6765388 6765554 -111097073 + AluSg/x SINE Alu 132 297 -15 2180 86 7 13 chr9 6766631 6766934 -111095693 + AluSg SINE Alu 2 302 -8 1988 139 0 0 chr9 6767125 6767427 -111095200 + AluSx SINE Alu 7 308 -4 1606 112 37 121 chr9 6767577 6767954 -111094673 - MER4A LTR ERV1 0 664 261 539 160 0 20 chr9 6767954 6768054 -111094573 - MER4A LTR ERV1 -566 98 1 268 253 190 0 chr9 6768054 6768132 -111094495 + MLT1G1 LTR MaLR 297 389 -206 2177 164 9 83 chr9 6768416 6768494 -111094133 + MER70A LTR ERVL 1 83 -389 1876 146 14 0 chr9 6768494 6768781 -111093846 - AluSx SINE Alu -21 291 1 2177 164 9 83 chr9 6768781 6768804 -111093823 + MER70A LTR ERVL 83 106 -366 2126 91 3 23 chr9 6768804 6769111 -111093516 + AluSp SINE Alu 1 301 -12 2177 164 9 83 chr9 6769111 6769429 -111093198 + MER70A LTR ERVL 106 390 -82 364 188 58 0 chr9 6769530 6769599 -111093028 + MER70A LTR ERVL 400 472 0 1889 101 69 3 chr9 6769635 6769923 -111092704 + AluSx SINE Alu 1 307 -5 1098 235 0 0 chr9 6770048 6770244 -111092383 + LTR28 LTR ERV1 1 196 -824 29 0 0 0 chr9 6770244 6770273 -111092354 + AT_rich Low_complexity Low_complexity 1 29 0 315 252 126 8 chr9 6770273 6770392 -111092235 - L1MCa LINE L1 -4361 2065 1933 430 240 116 8 chr9 6770415 6770544 -111092083 + LTR28 LTR ERV1 202 344 -676 607 275 18 30 chr9 6770549 6770716 -111091911 + MER61D LTR ERV1 337 501 0 1237 225 3 40 chr9 6770770 6770904 -111091723 + AluJo SINE Alu 4 141 -171 2175 120 0 0 chr9 6770904 6771213 -111091414 + AluSx SINE Alu 1 309 -3 1237 225 3 40 chr9 6771213 6771376 -111091251 + AluJo SINE Alu 141 290 -22 1990 118 3 13 chr9 6771430 6771734 -111090893 - AluSc SINE Alu 0 309 9 2138 118 0 0 chr9 6771751 6772056 -111090571 - AluSx SINE Alu -7 305 1 2129 106 0 13 chr9 6772061 6772363 -111090264 - AluSx SINE Alu -14 298 1 561 126 23 0 chr9 6772412 6772499 -111090128 + AluSg SINE Alu 12 100 -210 2327 78 0 10 chr9 6772806 6773114 -111089513 - AluSq SINE Alu -8 305 1 238 122 73 0 chr9 6773624 6773665 -111088962 + MER57A LTR ERV1 295 338 -65 1492 206 3 10 chr9 6773686 6773992 -111088635 + AluJb SINE Alu 5 308 -4 2106 97 10 0 chr9 6774057 6774357 -111088270 - AluY SINE Alu -8 303 1 22 35 0 0 chr9 6774415 6774444 -111088183 + AT_rich Low_complexity Low_complexity 1 29 0 712 168 0 8 chr9 6774444 6774563 -111088064 - FLAM_C SINE Alu -15 118 1 4003 173 43 8 chr9 6774621 6775373 -111087254 - L1MB7 LINE L1 -16 6168 5391 741 176 0 0 chr9 6775413 6775544 -111087083 - FLAM_C SINE Alu -3 140 10 706 203 27 20 chr9 6776183 6776331 -111086296 - FRAM SINE Alu -30 146 1 306 296 51 0 chr9 6777145 6777243 -111085384 - L1M4 LINE L1 -2971 3175 3073 531 66 0 0 chr9 6777243 6777319 -111085308 + (CTTG)n Simple_repeat Simple_repeat 2 77 0 1819 148 4 0 chr9 6777320 6777598 -111085029 - AluSx SINE Alu -33 279 1 446 266 80 88 chr9 6777644 6777870 -111084757 + L1MC/D LINE L1 5255 5478 -2330 645 209 16 0 chr9 6777888 6778017 -111084610 + FLAM_A SINE Alu 1 131 -2 2195 113 0 0 chr9 6778019 6778320 -111084307 + AluSx SINE Alu 1 301 -11 1514 188 7 36 chr9 6778410 6778714 -111083913 + AluJo SINE Alu 1 295 -17 27 0 0 0 chr9 6778716 6778743 -111083884 + AT_rich Low_complexity Low_complexity 1 27 0 2074 116 3 22 chr9 6780121 6780440 -111082187 + AluSp SINE Alu 1 313 0 1552 180 10 35 chr9 6780774 6781085 -111081542 + AluJo SINE Alu 1 303 -9 1691 169 23 10 chr9 6781085 6781392 -111081235 + AluSx SINE Alu 1 312 0 2129 117 0 0 chr9 6781582 6781881 -111080746 + AluSg SINE Alu 1 299 -11 1514 182 0 21 chr9 6782329 6782620 -111080007 - AluJb SINE Alu -27 285 1 216 97 0 0 chr9 6782709 6782740 -111079887 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 1989 80 88 0 chr9 6783067 6783341 -111079286 - AluSx SINE Alu -13 299 2 235 244 178 39 chr9 6783537 6783635 -111078992 - MER2 DNA MER2_type -16 329 246 2174 118 0 0 chr9 6783635 6783941 -111078686 + AluSx SINE Alu 1 306 -6 235 244 178 39 chr9 6783941 6784022 -111078605 - MER2 DNA MER2_type -99 246 125 324 172 30 49 chr9 6784024 6784261 -111078366 + AluJb SINE Alu 2 301 0 2101 120 3 0 chr9 6784408 6784717 -111077910 - AluSg SINE Alu 0 310 1 201 74 0 0 chr9 6784718 6784745 -111077882 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 298 170 0 0 chr9 6785602 6785649 -111076978 - L2 LINE L2 0 3313 3267 2246 77 0 10 chr9 6786715 6787028 -111075599 + AluY SINE Alu 1 310 -1 1958 87 37 24 chr9 6787480 6787778 -111074849 + AluSq SINE Alu 1 302 -11 1923 114 4 0 chr9 6787990 6788310 -111074317 + AluSx SINE Alu 1 321 0 907 158 0 74 chr9 6788314 6788516 -111074111 - AluJb SINE Alu -2 310 124 1710 168 21 0 chr9 6788530 6788816 -111073811 + AluJb SINE Alu 1 292 -20 2274 72 0 28 chr9 6788821 6789141 -111073486 + AluY SINE Alu 1 311 0 2177 59 0 21 chr9 6789148 6789487 -111073140 + AluY SINE Alu 1 333 0 331 224 0 0 chr9 6789900 6789967 -111072660 + L1ME LINE L1 5619 5685 -436 2190 99 0 13 chr9 6790239 6790553 -111072074 + AluSg SINE Alu 1 310 0 2109 92 0 0 chr9 6790823 6791104 -111071523 + AluSx SINE Alu 1 281 -31 1611 171 3 13 chr9 6792272 6792571 -111070056 + AluSx SINE Alu 10 305 -7 2276 85 0 0 chr9 6792899 6793193 -111069434 - AluSg SINE Alu -16 294 1 372 22 0 0 chr9 6793524 6793569 -111069058 + (CA)n Simple_repeat Simple_repeat 1 45 0 195 42 0 0 chr9 6793617 6793641 -111068986 + (CCCCCT)n Simple_repeat Simple_repeat 2 25 0 10861 28 20 31 chr9 6793646 6795009 -111067618 + SVA Other Other 38 1385 -1 1856 199 97 21 chr9 6795571 6796002 -111066625 + MLT1C LTR MaLR 1 464 -3 2129 99 0 3 chr9 6796086 6796379 -111066248 + AluSx SINE Alu 5 296 -16 2428 60 0 3 chr9 6798390 6798691 -111063936 + AluY SINE Alu 1 300 -11 747 114 21 6 chr9 6799884 6800129 -111062498 + AluJ SINE Alu 1 294 -18 1927 75 20 0 chr9 6800598 6800852 -111061775 - AluSq SINE Alu -16 297 39 25 0 0 0 chr9 6801178 6801203 -111061424 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr9 6801304 6801327 -111061300 + (TA)n Simple_repeat Simple_repeat 2 24 0 908 132 0 22 chr9 6801329 6801465 -111061162 - FLAM_C SINE Alu 0 133 1 969 91 0 0 chr9 6801535 6801667 -111060960 + AluY SINE Alu 173 304 -7 1442 156 31 28 chr9 6803160 6803449 -111059178 + AluJo SINE Alu 1 290 -22 187 355 106 23 chr9 6804667 6804932 -111057695 + L2 LINE L2 2140 2426 -888 271 261 0 0 chr9 6804950 6805015 -111057612 + LTR16B LTR ERVL 54 118 -346 435 193 45 0 chr9 6805017 6805105 -111057522 + AluS SINE Alu 2 93 -219 631 167 135 26 chr9 6805109 6805265 -111057362 + L1ME3A LINE L1 5693 5865 -305 2113 104 0 3 chr9 6805711 6806009 -111056618 - AluSx SINE Alu -15 297 1 525 220 135 21 chr9 6806009 6806150 -111056477 - FRAM SINE Alu -13 163 7 1973 259 96 31 chr9 6806166 6806434 -111056193 + L2 LINE L2 2005 2254 -1060 2045 129 0 0 chr9 6806434 6806745 -111055882 - AluY SINE Alu 0 311 1 1973 259 96 31 chr9 6806745 6807239 -111055388 + L2 LINE L2 2254 2816 -498 597 244 65 57 chr9 6807244 6807474 -111055153 - LTR33 LTR ERVL -2 519 288 1350 197 4 4 chr9 6807693 6807972 -111054655 - AluJo SINE Alu -33 279 1 2097 101 13 7 chr9 6808530 6808836 -111053791 + AluSx SINE Alu 5 312 0 1693 95 91 18 chr9 6810024 6810298 -111052329 - AluSc SINE Alu -14 295 2 1205 135 5 25 chr9 6811011 6811211 -111051416 + AluSx SINE Alu 1 196 -116 1465 199 13 10 chr9 6811424 6811763 -111050864 + AluSx SINE Alu 1 340 0 22 35 0 0 chr9 6813119 6813148 -111049479 + GC_rich Low_complexity Low_complexity 1 29 0 389 92 70 21 chr9 6813473 6813615 -111049012 + (TATAA)n Simple_repeat Simple_repeat 1 149 0 1689 146 4 7 chr9 6814143 6814423 -111048204 + AluJb SINE Alu 5 283 -29 43 0 0 0 chr9 6814455 6814498 -111048129 + AT_rich Low_complexity Low_complexity 1 43 0 * 300 224 83 68 chr9 6814482 6814674 -111047953 + L1MC5 LINE L1 7571 7765 -196 1861 106 71 3 chr9 6815180 6815463 -111047164 + AluSx SINE Alu 1 302 -10 2201 95 3 7 chr9 6815801 6816105 -111046522 + AluSc SINE Alu 1 303 -6 2091 137 0 3 chr9 6816540 6816853 -111045774 - AluSx SINE Alu 0 312 1 304 280 72 32 chr9 6816929 6816973 -111045654 - MIR SINE MIR -62 146 105 1236 172 4 70 chr9 6816973 6817229 -111045398 + MER8 DNA MER2_type 1 239 0 2266 94 0 3 chr9 6817230 6817539 -111045088 + AluSq SINE Alu 1 308 -5 304 280 72 32 chr9 6817539 6817617 -111045010 - MIR SINE MIR -102 106 17 647 131 46 39 chr9 6817655 6817785 -111044842 + FLAM_A SINE Alu 1 131 -2 222 209 47 0 chr9 6817797 6817840 -111044787 + MIR SINE MIR 67 111 -151 411 303 73 12 chr9 6817843 6818008 -111044619 + MIR SINE MIR 85 259 -3 2004 96 0 36 chr9 6818479 6818782 -111043845 + AluSx SINE Alu 1 292 -20 2013 113 17 3 chr9 6818804 6819104 -111043523 + AluSx SINE Alu 1 304 -8 2199 88 3 7 chr9 6820483 6820789 -111041838 + AluSp SINE Alu 1 305 -8 216 200 0 0 chr9 6820806 6820851 -111041776 + GA-rich Low_complexity Low_complexity 4 48 0 696 144 0 24 chr9 6820857 6820982 -111041645 + FLAM_C SINE Alu 5 126 -7 3819 150 49 71 chr9 6821023 6821725 -111040902 + LTR39 LTR ERV1 1 717 -66 1730 153 14 0 chr9 6821725 6822012 -111040615 + AluJb SINE Alu 1 291 -21 3819 150 49 71 chr9 6822012 6822032 -111040595 + LTR39 LTR ERV1 717 736 -47 2028 127 0 0 chr9 6822032 6822331 -111040296 + AluSx SINE Alu 4 302 -10 3819 150 49 71 chr9 6822331 6822408 -111040219 + LTR39 LTR ERV1 736 783 0 2298 85 7 0 chr9 6822965 6823272 -111039355 - AluSq SINE Alu -4 309 1 2290 76 3 7 chr9 6823448 6823751 -111038876 - AluSx SINE Alu -10 302 1 1937 114 3 50 chr9 6823771 6824088 -111038539 - AluSp SINE Alu -11 302 1 1349 181 12 116 chr9 6824470 6824668 -111037959 - AluJo SINE Alu 0 302 85 1928 141 0 26 chr9 6824668 6824980 -111037647 - AluSx SINE Alu -8 304 1 2228 83 0 3 chr9 6824983 6825284 -111037343 - AluSg SINE Alu -10 300 1 1349 181 12 116 chr9 6825284 6825418 -111037209 - AluJo SINE Alu -219 83 1 1513 169 0 77 chr9 6825792 6825914 -111036713 + AluJb SINE Alu 1 131 -181 2281 85 3 0 chr9 6825914 6826209 -111036418 - AluSp SINE Alu -17 296 1 1513 169 0 77 chr9 6826209 6826424 -111036203 + AluJb SINE Alu 131 312 0 1913 100 0 4 chr9 6826522 6826792 -111035835 + AluSq SINE Alu 35 303 -10 372 331 47 0 chr9 6826804 6826931 -111035696 + HERVL68 LTR ERVL 1084 1216 -4314 390 56 14 111 chr9 6826975 6827047 -111035580 + Alu SINE Alu 236 300 0 485 226 49 0 chr9 6827113 6827215 -111035412 + HERVL68 LTR ERVL 3510 3616 -1914 269 119 24 0 chr9 6827209 6827251 -111035376 + HERVL68 LTR ERVL 3765 3807 -1723 * 586 341 70 24 chr9 6827526 6827895 -111034732 + HERVL68 LTR ERVL 2490 2875 -2655 2091 92 0 3 chr9 6827911 6828225 -111034402 - AluSc SINE Alu 0 313 1 1409 177 106 40 chr9 6828231 6828553 -111034074 - MLT1D LTR MaLR 0 505 163 1360 115 0 14 chr9 6828876 6829084 -111033543 - AluSq SINE Alu -5 308 104 1334 127 0 14 chr9 6829094 6829306 -111033321 - AluSg/x SINE Alu 0 312 104 2043 123 16 7 chr9 6829311 6829620 -111033007 - AluSx SINE Alu 0 312 1 292 163 0 0 chr9 6829635 6829678 -111032949 - MER57A LTR ERV1 -66 337 295 1989 125 3 0 chr9 6830143 6830431 -111032196 - AluSx SINE Alu -23 289 1 2126 121 0 0 chr9 6830565 6830872 -111031755 + AluSq SINE Alu 1 307 -6 1002 54 15 0 chr9 6830872 6831002 -111031625 + AluY SINE Alu 1 132 -179 225 0 0 0 chr9 6831463 6831488 -111031139 + (A)n Simple_repeat Simple_repeat 1 25 0 678 200 13 13 chr9 6831488 6831638 -111030989 + HERVL68 LTR ERVL 770 919 -2118 1963 134 13 0 chr9 6831650 6831949 -111030678 + AluSg SINE Alu 1 303 -7 2174 101 0 3 chr9 6831961 6832268 -111030359 + AluSg SINE Alu 1 306 -4 2330 87 0 3 chr9 6832320 6832630 -111029997 + AluSg1 SINE Alu 1 309 0 1594 159 17 23 chr9 6832655 6832957 -111029670 + AluJb SINE Alu 1 300 -12 1950 173 36 48 chr9 6832957 6833224 -111029403 + HERVL68 LTR ERVL 929 1191 -1846 2028 133 0 0 chr9 6833224 6833526 -111029101 + AluSx SINE Alu 1 302 -10 1950 173 36 48 chr9 6833526 6833679 -111028948 + HERVL68 LTR ERVL 1191 1344 -1693 2478 121 24 66 chr9 6833679 6833730 -111028897 - MER57B LTR ERV1 0 434 382 2378 64 0 0 chr9 6833730 6834025 -111028602 + AluY SINE Alu 1 295 -16 2478 121 24 66 chr9 6834025 6834426 -111028201 - MER57B LTR ERV1 -52 382 1 1585 81 124 4 chr9 6834430 6834664 -111027963 - MER57B-int LTR ERV1 -4 7533 7272 612 118 30 104 chr9 6834664 6834710 -111027917 - LTR54B LTR ERV1 -371 127 79 2383 63 9 25 chr9 6834710 6835028 -111027599 - AluSp SINE Alu 0 313 1 612 118 30 104 chr9 6835028 6835116 -111027511 - LTR54B LTR ERV1 -419 79 3 2832 89 0 0 chr9 6835116 6835477 -111027150 - MER57B-int LTR ERV1 -389 7148 6788 2374 74 7 0 chr9 6835482 6835791 -111026836 + AluY SINE Alu 1 311 0 586 94 0 62 chr9 6835805 6835901 -111026726 + AluS SINE Alu 2 91 -222 321 93 0 0 chr9 6835901 6835944 -111026683 - Alu SINE Alu -265 43 1 939 111 24 83 chr9 6835944 6836127 -111026500 - MER57-int LTR ERV1 -4402 1451 1259 2134 120 0 0 chr9 6836127 6836428 -111026199 + AluSx SINE Alu 1 301 -11 939 111 24 83 chr9 6836428 6836548 -111026079 - MER57-int LTR ERV1 -4594 1259 632 2726 181 48 25 chr9 6836572 6836998 -111025629 + HERVL68 LTR ERVL 1377 1821 -1216 4256 77 9 0 chr9 6836998 6837547 -111025080 - MER41A LTR ERV1 0 554 1 2726 181 48 25 chr9 6837547 6837684 -111024943 + HERVL68 LTR ERVL 1821 1953 -1084 2300 85 3 0 chr9 6837685 6837990 -111024637 - AluSp SINE Alu -7 306 1 737 239 117 9 chr9 6838565 6838787 -111023840 + REP3 LTR ERV 290 535 -27 2173 132 30 28 chr9 6838792 6839155 -111023472 + THE1B LTR MaLR 1 364 0 6538 96 3 0 chr9 6839156 6840020 -111022607 + THE1B-int LTR MaLR 2 868 -712 633 228 7 0 chr9 6840024 6840160 -111022467 + L1P LINE L1 4187 4323 -1823 1790 141 3 3 chr9 6840167 6840471 -111022156 + AluSx SINE Alu 3 306 -6 273 162 4 70 chr9 6840482 6840547 -111022080 + AluJo SINE Alu 83 134 -168 1448 88 39 61 chr9 6840566 6840775 -111021852 + L1P4 LINE L1 5128 5331 -834 2168 117 0 10 chr9 6840775 6841083 -111021544 + AluSq SINE Alu 1 305 -8 1448 88 39 61 chr9 6841083 6841251 -111021376 + L1P4 LINE L1 5331 5501 -664 1836 125 18 4 chr9 6841251 6841532 -111021095 + AluSq SINE Alu 1 285 -28 432 0 0 0 chr9 6841532 6841580 -111021047 + (CTAAA)n Simple_repeat Simple_repeat 3 50 0 1851 106 8 0 chr9 6841591 6841855 -111020772 + AluSx SINE Alu 1 266 -46 1289 128 0 137 chr9 6841858 6842015 -111020612 - AluJb SINE Alu -40 272 178 1306 120 147 71 chr9 6842015 6842281 -111020346 - AluSx SINE Alu -26 286 1 1289 128 0 137 chr9 6842281 6842436 -111020191 - AluJb SINE Alu -134 178 3 1928 133 0 0 chr9 6842483 6842769 -111019858 - AluSx SINE Alu -26 286 1 659 156 57 8 chr9 6843122 6843244 -111019383 + FLAM_C SINE Alu 12 139 -4 2127 116 0 6 chr9 6843275 6843586 -111019041 - AluSc SINE Alu 0 309 1 2266 70 0 0 chr9 6843591 6843899 -111018728 - AluY SINE Alu 0 308 1 2064 126 0 0 chr9 6843914 6844215 -111018412 - AluSx SINE Alu -11 301 1 1644 132 12 0 chr9 6844228 6844470 -111018157 - AluSg SINE Alu -16 294 50 699 221 49 71 chr9 6844470 6844512 -111018115 - L1MDa LINE L1 -4380 2160 2119 2021 118 3 3 chr9 6844512 6844816 -111017811 + AluSc SINE Alu 1 304 -5 699 221 49 71 chr9 6844816 6845081 -111017546 - L1MDa LINE L1 -4421 2119 1860 728 154 0 70 chr9 6845121 6845264 -111017363 - FLAM_C SINE Alu 0 133 1 1607 109 0 0 chr9 6845359 6845588 -111017039 - AluSg/x SINE Alu -2 308 80 725 95 0 0 chr9 6845588 6845683 -111016944 - AluSg SINE Alu -188 122 28 232 259 120 0 chr9 6845698 6845806 -111016821 - L1MDa LINE L1 -4782 1758 1638 245 195 0 0 chr9 6845817 6845858 -111016769 - MER57A LTR ERV1 -67 336 296 503 214 44 87 chr9 6845858 6846064 -111016563 - L1MDa LINE L1 -4873 1667 1471 328 177 0 0 chr9 6846078 6846140 -111016487 - AluS SINE Alu -8 293 232 827 129 0 0 chr9 6846299 6846423 -111016204 + AluSg/x SINE Alu 173 296 -14 187 398 21 0 chr9 6846696 6846789 -111015838 + L2 LINE L2 3178 3272 0 1867 147 7 3 chr9 6846896 6847203 -111015424 - AluSx SINE Alu -4 308 1 858 168 0 0 chr9 6847313 6847444 -111015183 - FLAM_C SINE Alu -2 131 1 2210 103 0 3 chr9 6847641 6847941 -111014686 + AluSc SINE Alu 2 300 -9 681 197 15 29 chr9 6847953 6848090 -111014537 - AluJo SINE Alu -176 136 2 216 111 0 0 chr9 6848361 6848397 -111014230 + (TCC)n Simple_repeat Simple_repeat 3 38 0 1484 171 75 0 chr9 6848713 6848994 -111013633 + AluJo SINE Alu 1 302 0 188 135 27 0 chr9 6848999 6849036 -111013591 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 1950 113 13 17 chr9 6849036 6849199 -111013428 - AluSx SINE Alu -13 299 136 2145 106 13 0 chr9 6849199 6849501 -111013126 - AluSp SINE Alu -6 307 2 1950 113 13 17 chr9 6849501 6849637 -111012990 - AluSx SINE Alu -176 136 1 2476 39 3 7 chr9 6849659 6849965 -111012662 - AluY SINE Alu -6 305 1 1584 186 0 24 chr9 6849994 6850123 -111012504 + AluJb SINE Alu 1 132 -180 2513 36 13 0 chr9 6850123 6850430 -111012197 + AluY SINE Alu 1 311 0 1584 186 0 24 chr9 6850430 6850596 -111012031 + AluJb SINE Alu 132 289 -23 234 0 0 0 chr9 6850599 6850625 -111012002 + (CCAA)n Simple_repeat Simple_repeat 2 27 0 574 248 101 50 chr9 6850628 6850662 -111011965 - Charlie1 DNA MER1_type -2517 244 213 2162 81 27 3 chr9 6850662 6850959 -111011668 + AluY SINE Alu 1 304 -7 574 248 101 50 chr9 6850959 6851122 -111011505 - Charlie1 DNA MER1_type -2548 213 37 1707 146 41 7 chr9 6851292 6851614 -111011013 + AluSx SINE Alu 1 312 0 2357 74 3 0 chr9 6851622 6851921 -111010706 + AluSp SINE Alu 1 300 -13 183 42 0 0 chr9 6851924 6851948 -111010679 + (TTA)n Simple_repeat Simple_repeat 1 24 0 2041 123 3 0 chr9 6852422 6852715 -111009912 - AluSp SINE Alu -19 294 1 1330 150 0 26 chr9 6852866 6853093 -111009534 + AluJo SINE Alu 91 311 -1 2198 107 3 0 chr9 6853101 6853410 -111009217 + AluSq SINE Alu 1 310 -3 2130 122 0 0 chr9 6853555 6853850 -111008777 + AluSg SINE Alu 1 295 -15 918 251 67 110 chr9 6854151 6854560 -111008067 - MLT1H LTR MaLR -11 538 154 1812 147 0 0 chr9 6854560 6854846 -111007781 + AluJb SINE Alu 1 286 -26 918 251 67 110 chr9 6854846 6854945 -111007682 - MLT1H LTR MaLR -395 154 52 1334 14 0 0 chr9 6855448 6855596 -111007031 + AluY SINE Alu 1 148 -163 252 0 0 0 chr9 6855699 6855727 -111006900 + (A)n Simple_repeat Simple_repeat 1 28 0 1954 121 28 0 chr9 6855779 6856068 -111006559 - AluSq SINE Alu -16 297 1 865 195 51 96 chr9 6856748 6856803 -111005824 - MSTD LTR MaLR 0 396 340 862 133 0 22 chr9 6856803 6856938 -111005689 - FLAM_C SINE Alu 0 133 2 865 195 51 96 chr9 6856938 6857155 -111005472 - MSTD LTR MaLR -56 340 87 2362 77 0 7 chr9 6857231 6857541 -111005086 - AluY SINE Alu -3 308 1 2110 132 0 0 chr9 6857567 6857878 -111004749 - AluSq SINE Alu -2 311 1 1820 145 7 7 chr9 6857959 6858269 -111004358 + AluJb SINE Alu 1 310 -2 1672 147 6 58 chr9 6858321 6858455 -111004172 + AluSx SINE Alu 1 140 -172 2165 102 0 0 chr9 6858455 6858749 -111003878 + AluY SINE Alu 1 294 -17 1672 147 6 58 chr9 6858749 6858941 -111003686 + AluSx SINE Alu 140 310 -2 591 236 52 17 chr9 6859504 6859678 -111002949 + MIR SINE MIR 77 256 -6 2216 73 0 0 chr9 6859800 6860088 -111002539 + AluSx SINE Alu 1 288 -24 1740 122 44 0 chr9 6863036 6863361 -110999266 + AluSx SINE Alu 1 337 0 2137 158 47 27 chr9 6863362 6863811 -110998816 - L1MB8 LINE L1 -72 6106 5649 180 0 0 0 chr9 6863811 6863831 -110998796 + (TA)n Simple_repeat Simple_repeat 1 20 0 2237 73 0 7 chr9 6863908 6864237 -110998390 - AluY SINE Alu 0 327 1 2139 95 13 36 chr9 6864368 6864674 -110997953 - AluSx SINE Alu -13 299 1 1292 209 60 11 chr9 6864702 6864985 -110997642 - AluJo SINE Alu -15 297 1 2107 73 52 11 chr9 6865177 6865463 -110997164 - AluSg SINE Alu -12 298 1 1749 64 0 0 chr9 6865464 6865683 -110996944 - L1PA6 LINE L1 0 6154 5936 768 171 39 0 chr9 6865707 6865836 -110996791 - AluJo SINE Alu -177 135 2 205 195 52 0 chr9 6865941 6866018 -110996609 + (TTATA)n Simple_repeat Simple_repeat 3 83 0 2271 104 3 7 chr9 6866028 6866325 -110996302 - AluSq SINE Alu -17 296 1 242 234 36 72 chr9 6866649 6866760 -110995867 + L2 LINE L2 2934 3040 -232 393 233 70 39 chr9 6866893 6867022 -110995605 + L1ME4a LINE L1 5987 6119 -2 2273 91 3 7 chr9 6867127 6867424 -110995203 - AluSp SINE Alu -17 296 1 268 200 67 40 chr9 6867863 6867938 -110994689 - L2 LINE L2 -33 3280 3204 285 274 89 66 chr9 6868700 6869003 -110993624 + L2 LINE L2 3002 3311 -2 399 161 23 23 chr9 6869038 6869125 -110993502 + MER112 DNA MER1_type 23 109 -151 2141 121 0 16 chr9 6869148 6869453 -110993174 - AluSx SINE Alu -11 301 2 23 33 0 0 chr9 6869457 6869487 -110993140 + AT_rich Low_complexity Low_complexity 1 30 0 657 150 154 91 chr9 6869491 6869711 -110992916 - MER46A DNA MER2_type -1 235 2 2362 86 0 10 chr9 6870492 6870806 -110991821 - AluY SINE Alu 0 311 1 1849 121 6 82 chr9 6870809 6871124 -110991503 - AluSx SINE Alu -21 291 1 22 35 0 0 chr9 6871265 6871294 -110991333 + AT_rich Low_complexity Low_complexity 1 29 0 732 221 117 29 chr9 6871811 6872051 -110990576 - L1MC4 LINE L1 -180 7862 7602 2407 100 3 0 chr9 6872129 6872438 -110990189 - AluSq SINE Alu -3 310 1 198 167 0 0 chr9 6872695 6872731 -110989896 + T-rich Low_complexity Low_complexity 2 37 0 317 259 14 61 chr9 6872813 6872960 -110989667 + MIR SINE MIR 71 210 -52 2101 136 7 0 chr9 6873265 6873575 -110989052 + AluSq SINE Alu 2 313 0 2483 88 0 0 chr9 6874133 6874439 -110988188 - AluSg SINE Alu -4 306 1 913 125 0 22 chr9 6874460 6874596 -110988031 - FLAM_C SINE Alu 0 133 1 2174 115 3 7 chr9 6874672 6874976 -110987651 - AluSx SINE Alu -9 303 1 1751 74 5 0 chr9 6875517 6875732 -110986895 - AluSg/x SINE Alu -14 296 81 2335 89 3 0 chr9 6875733 6876025 -110986602 - AluSp SINE Alu -19 294 2 2259 107 0 16 chr9 6876044 6876361 -110986266 - AluSx SINE Alu 0 312 1 1807 150 7 20 chr9 6876361 6876660 -110985967 - AluJo SINE Alu -5 307 12 2197 128 3 0 chr9 6876855 6877152 -110985475 + AluSx SINE Alu 1 298 -14 226 48 0 48 chr9 6877270 6877312 -110985315 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1777 118 0 0 chr9 6877324 6877553 -110985074 - AluSx SINE Alu -83 229 1 1934 145 32 0 chr9 6877749 6878031 -110984596 + AluSx SINE Alu 2 292 -20 624 252 30 70 chr9 6878347 6878378 -110984249 - L1ME3A LINE L1 -294 5872 5841 2033 139 0 20 chr9 6878378 6878680 -110983947 - AluSx SINE Alu -14 298 3 624 252 30 70 chr9 6878680 6878878 -110983749 - L1ME3A LINE L1 -325 5841 5652 2255 93 7 0 chr9 6878896 6879185 -110983442 - AluSq SINE Alu -21 292 2 661 212 179 5 chr9 6879192 6879376 -110983251 - MER20 DNA MER1_type -3 216 1 770 199 0 57 chr9 6879448 6879624 -110983003 - FRAM SINE Alu -11 165 1 1891 96 88 7 chr9 6879633 6879905 -110982722 - AluSc SINE Alu -15 294 1 2101 99 20 10 chr9 6879964 6880267 -110982360 - AluSq SINE Alu -7 306 1 588 98 0 0 chr9 6881005 6881087 -110981540 - AluSg/x SINE Alu -20 292 211 965 142 24 41 chr9 6881282 6881451 -110981176 - AluJo/FRAM SINE Alu -13 299 134 2275 110 0 0 chr9 6881451 6881750 -110980877 - AluSx SINE Alu -8 304 6 2149 109 0 3 chr9 6881850 6882134 -110980493 + AluSx SINE Alu 1 283 -29 299 69 52 52 chr9 6882182 6882240 -110980387 - Alu SINE Alu 0 301 244 1072 111 0 7 chr9 6882244 6882388 -110980239 - AluSq/x SINE Alu -170 143 1 2312 64 42 0 chr9 6882399 6882682 -110979945 - AluY SINE Alu -16 295 1 226 242 91 0 chr9 6883061 6883127 -110979500 + LTR67 LTR ERVL 485 556 -1 2061 136 3 7 chr9 6883851 6884161 -110978466 + AluSq SINE Alu 1 309 -4 3199 186 18 46 chr9 6884584 6885187 -110977440 + MER82 DNA MER2_type 2 586 -67 2116 106 7 16 chr9 6885187 6885490 -110977137 - AluSq SINE Alu -13 300 1 3199 186 18 46 chr9 6885490 6885554 -110977073 + MER82 DNA MER2_type 586 650 -3 367 256 147 24 chr9 6885705 6885916 -110976711 + MIR SINE MIR 6 242 -20 206 369 39 8 chr9 6887089 6887219 -110975408 - L2 LINE L2 -1339 1975 1842 503 235 59 48 chr9 6887464 6887651 -110974976 - MIR SINE MIR -26 236 48 1327 138 0 15 chr9 6887703 6887898 -110974729 - AluSx SINE Alu -120 192 1 1953 202 23 32 chr9 6888417 6888708 -110973919 - MLT1C LTR MaLR 0 467 180 2309 92 0 7 chr9 6888708 6889003 -110973624 - AluSg SINE Alu -17 293 1 1953 202 23 32 chr9 6889003 6889182 -110973445 - MLT1C LTR MaLR -287 180 1 260 263 140 22 chr9 6890151 6890289 -110972338 + L1ME LINE L1 5320 5474 -647 2135 122 0 3 chr9 6890596 6890900 -110971727 - AluSx SINE Alu -9 303 1 549 261 142 89 chr9 6890905 6891593 -110971034 + L2 LINE L2 2422 3145 -168 1790 127 3 71 chr9 6892407 6892585 -110970042 - AluJb SINE Alu -9 303 155 2444 83 3 0 chr9 6892585 6892886 -110969741 - AluSp SINE Alu -11 302 1 1790 127 3 71 chr9 6892886 6893030 -110969597 - AluJb SINE Alu -157 155 3 1105 147 0 6 chr9 6893433 6893603 -110969024 + AluJb SINE Alu 3 171 -141 1811 88 88 47 chr9 6893769 6894066 -110968561 - AluY SINE Alu -2 309 1 261 83 0 0 chr9 6894168 6894204 -110968423 + (A)n Simple_repeat Simple_repeat 1 36 0 250 174 0 0 chr9 6894333 6894379 -110968248 + L2 LINE L2 3264 3309 -4 191 351 80 48 chr9 6894463 6894651 -110967976 + L2 LINE L2 2888 3081 -191 1768 149 26 4 chr9 6894651 6894919 -110967708 - AluSx SINE Alu -38 274 1 2175 128 3 0 chr9 6895254 6895560 -110967067 + AluSp SINE Alu 1 307 -6 2072 107 7 10 chr9 6895573 6895864 -110966763 + AluSx SINE Alu 3 292 -20 194 0 39 0 chr9 6895865 6895891 -110966736 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 278 139 0 0 chr9 6896033 6896076 -110966551 - AluSg SINE Alu -6 296 254 2136 112 0 0 chr9 6896076 6896352 -110966275 - AluSg SINE Alu -34 276 1 2419 85 0 9 chr9 6897192 6897508 -110965119 - AluSq SINE Alu 0 313 1 979 178 15 54 chr9 6897513 6897772 -110964855 - L1MB7 LINE L1 0 6184 5936 527 194 32 48 chr9 6897785 6897909 -110964718 - L2 LINE L2 -2 3311 3190 244 363 104 0 chr9 6897936 6898071 -110964556 - L2 LINE L2 -284 3029 2881 283 286 109 51 chr9 6898194 6898369 -110964258 - L2 LINE L2 -607 2707 2523 2206 122 0 3 chr9 6898992 6899295 -110963332 - AluSx SINE Alu -8 304 3 1900 174 0 0 chr9 6899333 6899637 -110962990 - AluJb SINE Alu -8 304 1 1632 95 14 0 chr9 6899829 6900051 -110962576 + AluSq SINE Alu 1 225 -88 1519 119 78 71 chr9 6900657 6900952 -110961675 - AluJb SINE Alu -15 297 1 10869 55 29 16 chr9 6901918 6903283 -110959344 - SVA Other Other -2 1384 2 228 67 0 0 chr9 6903296 6903326 -110959301 + (T)n Simple_repeat Simple_repeat 1 30 0 1703 157 13 43 chr9 6903606 6903751 -110958876 + AluJo SINE Alu 1 134 -178 2101 138 10 0 chr9 6903751 6904055 -110958572 + AluSx SINE Alu 1 307 -5 1703 157 13 43 chr9 6904055 6904209 -110958418 + AluJo SINE Alu 134 291 -21 1979 137 0 16 chr9 6904276 6904591 -110958036 - AluJb SINE Alu 0 312 3 210 257 57 0 chr9 6904718 6904788 -110957839 + MIR SINE MIR 62 135 -127 260 231 51 0 chr9 6904826 6904904 -110957723 + L1ME3A LINE L1 5003 5084 -1062 2242 64 68 14 chr9 6904907 6905202 -110957425 - AluY SINE Alu 0 311 1 345 24 0 0 chr9 6905284 6905326 -110957301 + (TC)n Simple_repeat Simple_repeat 2 43 0 1663 255 31 103 chr9 6905382 6905488 -110957139 + L1ME3A LINE L1 5263 5375 -795 2324 91 3 3 chr9 6905488 6905786 -110956841 + AluSq SINE Alu 1 298 -15 1663 255 31 103 chr9 6905786 6906282 -110956345 + L1ME3A LINE L1 5375 5770 -400 1735 145 80 0 chr9 6906282 6906572 -110956055 - AluSx SINE Alu 0 311 1 1663 255 31 103 chr9 6906572 6906946 -110955681 + L1ME3A LINE L1 5770 6170 0 2141 94 3 41 chr9 6906956 6907276 -110955351 + AluSc SINE Alu 1 308 -1 790 163 31 0 chr9 6907295 6907424 -110955203 + FLAM_C SINE Alu 1 133 0 1846 156 28 3 chr9 6907500 6907788 -110954839 - AluSx SINE Alu -17 295 1 814 284 10 0 chr9 6907890 6908098 -110954529 - MER63A DNA MER1_type 0 210 1 2260 98 3 3 chr9 6908143 6908440 -110954187 + AluSg SINE Alu 1 297 -13 2283 98 0 0 chr9 6908568 6908864 -110953763 - AluSg SINE Alu -14 296 1 306 262 219 16 chr9 6908906 6909089 -110953538 + MIR SINE MIR 34 253 -9 1868 180 158 68 chr9 6909836 6909878 -110952749 - MLT1F1 LTR MaLR 0 567 530 2268 101 3 0 chr9 6909878 6910202 -110952425 + AluSp SINE Alu 1 325 0 1868 180 158 68 chr9 6910202 6910525 -110952102 - MLT1F1 LTR MaLR -37 530 237 504 45 0 0 chr9 6910525 6910592 -110952035 + (TCTCCC)n Simple_repeat Simple_repeat 1 67 0 8756 24 9 264 chr9 6910592 6912376 -110950251 + SVA Other Other 57 1386 0 1868 180 158 68 chr9 6912376 6912518 -110950109 - MLT1F1 LTR MaLR -329 238 11 1789 166 31 0 chr9 6913382 6913672 -110948955 + AluJb SINE Alu 1 299 -13 228 299 130 0 chr9 6913960 6914037 -110948590 + L2 LINE L2 3186 3272 0 1810 153 7 7 chr9 6914256 6914565 -110948062 + AluJb SINE Alu 2 310 0 2012 83 8 8 chr9 6914826 6915090 -110947537 - AluSg SINE Alu -19 291 28 462 349 79 4 chr9 6915281 6915510 -110947117 - MIR SINE MIR -15 247 2 1111 90 28 0 chr9 6915769 6915914 -110946713 + AluSg/x SINE Alu 150 298 -14 2117 126 77 0 chr9 6916071 6916381 -110946246 - MER1B DNA MER1_type 0 337 4 2196 89 13 16 chr9 6916559 6916873 -110945754 + AluSp SINE Alu 1 313 0 551 186 93 62 chr9 6916873 6916994 -110945633 - FLAM_C SINE Alu -174 128 1 286 286 70 29 chr9 6917626 6917797 -110944830 - L1ME LINE L1 -406 5715 5538 25 0 0 0 chr9 6918851 6918876 -110943751 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr9 6919016 6919059 -110943568 + AT_rich Low_complexity Low_complexity 1 43 0 747 170 0 0 chr9 6919067 6919179 -110943448 - FLAM_C SINE Alu -30 113 2 341 281 38 72 chr9 6919185 6919270 -110943357 - L1MC4 LINE L1 -1 8041 7955 932 165 83 61 chr9 6919270 6919500 -110943127 + MER46A DNA MER2_type 1 235 -1 341 281 38 72 chr9 6919500 6919649 -110942978 - L1MC4 LINE L1 -87 7955 7815 255 119 203 0 chr9 6919654 6919713 -110942914 - L1MC4 LINE L1 -273 7769 7699 333 228 22 73 chr9 6919755 6919891 -110942736 - L1MC4 LINE L1 -725 7317 7189 734 200 35 102 chr9 6919896 6920227 -110942400 - L1ME3A LINE L1 -1 6169 5865 570 210 158 9 chr9 6920255 6920496 -110942131 - L1ME3A LINE L1 -556 5606 5328 247 276 105 6 chr9 6920670 6920851 -110941776 + L1MC5 LINE L1 7628 7826 -135 1864 155 7 10 chr9 6920874 6921170 -110941457 - AluJo SINE Alu -17 295 1 367 284 22 33 chr9 6921324 6921429 -110941198 - L1ME4a LINE L1 -9 6112 6008 2253 110 0 0 chr9 6921429 6921730 -110940897 - AluSg SINE Alu -9 301 1 367 284 22 33 chr9 6921730 6921807 -110940820 - L1ME4a LINE L1 -113 6008 5932 210 227 29 39 chr9 6922368 6922465 -110940162 - MIR SINE MIR -67 141 70 201 221 126 63 chr9 6923864 6923959 -110938668 - L2 LINE L2 -208 3064 2964 7439 51 2 0 chr9 6924388 6925287 -110937340 - L1PA6 LINE L1 0 6154 5254 1849 134 42 0 chr9 6925316 6925600 -110937027 - AluSx SINE Alu -16 296 1 580 256 94 6 chr9 6925802 6925982 -110936645 + MER58A DNA MER1_type 28 223 -1 1353 155 52 174 chr9 6928150 6928527 -110934100 - Charlie1b DNA MER1_type -2238 523 238 2241 111 0 7 chr9 6928527 6928834 -110933793 + AluSq SINE Alu 1 305 -8 1353 155 52 174 chr9 6928834 6929046 -110933581 - Charlie1b DNA MER1_type -2523 238 2 1791 186 0 3 chr9 6929465 6929777 -110932850 - AluJb SINE Alu -1 311 1 399 307 108 25 chr9 6929991 6930232 -110932395 - L1ME4a LINE L1 -43 6078 5818 2302 103 0 3 chr9 6930249 6930551 -110932076 + AluSx SINE Alu 1 301 -11 278 302 101 16 chr9 6930857 6930986 -110931641 + MIR3 SINE MIR 67 206 -2 293 299 186 26 chr9 6931474 6931705 -110930922 + L3 LINE CR1 891 1158 -419 2415 74 0 0 chr9 6931816 6932112 -110930515 - AluY SINE Alu -15 296 1 252 339 43 38 chr9 6932118 6932254 -110930373 + L3 LINE CR1 1372 1511 -66 2260 98 3 3 chr9 6932254 6932550 -110930077 + AluSp SINE Alu 1 296 -17 252 339 43 38 chr9 6932550 6932599 -110930028 + L3 LINE CR1 1511 1558 -19 412 247 129 32 chr9 6933145 6933331 -110929296 - MIR3 SINE MIR -4 204 1 854 286 51 83 chr9 6934836 6935026 -110927601 - MLT1J LTR MaLR 0 511 316 1872 117 92 0 chr9 6935026 6935307 -110927320 - AluSx SINE Alu -5 307 1 854 286 51 83 chr9 6935307 6935644 -110926983 - MLT1J LTR MaLR -195 316 1 2398 54 3 10 chr9 6935723 6936019 -110926608 + AluY SINE Alu 1 294 -17 2649 61 0 0 chr9 6936199 6936510 -110926117 - AluY SINE Alu 0 311 1 2128 116 0 35 chr9 6936510 6936821 -110925806 - AluSq SINE Alu -13 300 1 483 309 57 10 chr9 6937309 6937503 -110925124 + MIR SINE MIR 54 256 -6 1830 158 20 3 chr9 6937829 6938121 -110924506 - AluSx SINE Alu -15 297 1 262 0 53 0 chr9 6939448 6939486 -110923141 + (TTTTTG)n Simple_repeat Simple_repeat 3 42 0 665 106 0 4 chr9 6939957 6940176 -110922451 + AluSx SINE Alu 3 301 -11 818 278 69 31 chr9 6940423 6940844 -110921783 - L1ME3 LINE L1 -196 5949 5513 1692 197 3 0 chr9 6940848 6941142 -110921485 - AluJo SINE Alu -17 295 1 532 200 159 3 chr9 6941158 6941308 -110921319 - L1MB7 LINE L1 -9 6155 5992 360 220 136 67 chr9 6941307 6941659 -110920968 - L1ME3 LINE L1 -686 5475 5102 * 296 245 50 80 chr9 6941708 6941908 -110920719 - L1ME3 LINE L1 -5016 1103 910 3820 174 42 52 chr9 6992441 6992602 -110870025 - L1M3f LINE L1 -4383 945 784 1989 127 6 41 chr9 6992602 6992776 -110869851 - AluSx SINE Alu -4 308 148 2278 49 39 29 chr9 6992776 6993084 -110869543 - AluY SINE Alu 0 311 1 1989 127 6 41 chr9 6993084 6993224 -110869403 - AluSx SINE Alu -164 148 5 3820 174 42 52 chr9 6993224 6993940 -110868687 - L1M3f LINE L1 -4544 784 77 384 240 0 0 chr9 6993940 6994061 -110868566 + (TA)n Simple_repeat Simple_repeat 1 121 0 2210 98 3 10 chr9 6994061 6994357 -110868270 - AluSc SINE Alu -15 294 1 458 138 0 58 chr9 6994358 6994445 -110868182 - L1M3f LINE L1 -5241 87 6 245 337 41 51 chr9 6994742 6994840 -110867787 - L2 LINE L2 -19 3253 3157 1543 203 42 3 chr9 6995479 6995809 -110866818 + MER2 DNA MER2_type 2 344 0 501 295 101 4 chr9 6996488 6996746 -110865881 - LTR16A LTR ERVL 0 450 168 184 340 85 35 chr9 6997417 6997558 -110865069 + MIR SINE MIR 21 168 -94 22 35 0 0 chr9 6998449 6998478 -110864149 + AT_rich Low_complexity Low_complexity 1 29 0 2931 90 7 7 chr9 6999455 6999900 -110862727 - L1P LINE L1 -3470 2676 2232 806 158 0 7 chr9 6999900 7000039 -110862588 - Tigger1 DNA MER2_type -1217 1201 1064 1149 112 0 0 chr9 7000039 7000191 -110862436 - AluSp SINE Alu -14 299 148 1514 112 5 27 chr9 7000191 7000414 -110862213 - AluSx SINE Alu -94 218 1 2852 135 100 27 chr9 7000414 7001015 -110861612 - Tigger1 DNA MER2_type -1346 1072 428 522 43 0 0 chr9 7001015 7001084 -110861543 + (GA)n Simple_repeat Simple_repeat 1 69 0 1517 187 59 0 chr9 7001084 7001405 -110861222 - Tigger1 DNA MER2_type -2076 342 3 830 112 0 70 chr9 7001915 7002058 -110860569 + FLAM_C SINE Alu 1 133 0 271 57 0 0 chr9 7003350 7003385 -110859242 - U2 snRNA snRNA -153 35 1 2313 87 0 0 chr9 7004322 7004611 -110858016 - AluY SINE Alu -22 289 1 187 182 0 0 chr9 7004613 7004646 -110857981 + MIR3 SINE MIR 154 186 -22 22 0 0 0 chr9 7006606 7006628 -110855999 + AT_rich Low_complexity Low_complexity 1 22 0 188 206 123 41 chr9 7006760 7006833 -110855794 + MIR SINE MIR 75 153 -55 21 0 0 0 chr9 7007436 7007457 -110855170 + AT_rich Low_complexity Low_complexity 1 21 0 336 48 0 0 chr9 7009821 7009863 -110852764 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 240 0 20 chr9 7011679 7011729 -110850898 + CT-rich Low_complexity Low_complexity 4 52 0 1125 184 45 58 chr9 7012054 7012364 -110850263 - L1ME1 LINE L1 -4 6162 5857 1733 157 35 3 chr9 7013371 7013531 -110849096 - AluSx SINE Alu -16 296 122 2223 117 10 7 chr9 7013531 7013840 -110848787 - AluSg SINE Alu 0 310 1 1733 157 35 3 chr9 7013840 7013966 -110848661 - AluSx SINE Alu -190 122 1 2768 7 0 3 chr9 7015830 7016136 -110846491 - AluYa5 SINE Alu -6 305 1 360 0 0 0 chr9 7016260 7016300 -110846327 + (TG)n Simple_repeat Simple_repeat 1 40 0 462 277 35 7 chr9 7017370 7017511 -110845116 + MIR SINE MIR 98 242 -20 2102 188 25 11 chr9 7018343 7018821 -110843806 + L1MB7 LINE L1 5691 6175 -9 21 0 0 0 chr9 7018954 7018975 -110843652 + AT_rich Low_complexity Low_complexity 1 21 0 422 195 0 0 chr9 7019017 7019104 -110843523 + L1ME2 LINE L1 6068 6154 -10 22 35 0 0 chr9 7021340 7021369 -110841258 + AT_rich Low_complexity Low_complexity 1 29 0 905 252 96 15 chr9 7022270 7022603 -110840024 - MLT1E2 LTR MaLR 0 626 267 331 225 0 25 chr9 7022601 7022681 -110839946 - MLT1E2 LTR MaLR -407 98 21 * 759 161 22 29 chr9 7022755 7022892 -110839735 + AluJ SINE Alu 1 136 -176 32 0 0 0 chr9 7023605 7023637 -110838990 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr9 7023702 7023723 -110838904 + AT_rich Low_complexity Low_complexity 1 21 0 981 189 0 0 chr9 7026300 7026485 -110836142 - L1MC1 LINE L1 -12 6321 6137 781 139 0 15 chr9 7026529 7026666 -110835961 - L1MC1 LINE L1 -184 6149 6015 252 0 0 0 chr9 7026679 7026707 -110835920 + (TG)n Simple_repeat Simple_repeat 2 29 0 879 184 6 12 chr9 7027621 7027784 -110834843 + AluJ SINE Alu 136 297 -15 212 305 95 38 chr9 7028922 7029027 -110833600 - L2 LINE L2 -13 3259 3149 285 332 51 16 chr9 7029035 7029175 -110833452 + MER5B DNA MER1_type 38 175 -3 265 277 70 7 chr9 7029578 7029704 -110832923 + MIR SINE MIR 48 151 -57 472 321 132 35 chr9 7030478 7030818 -110831809 + L1MC/D LINE L1 5431 5803 -318 2134 134 3 0 chr9 7031093 7031392 -110831235 + AluSx SINE Alu 1 300 -12 290 49 0 0 chr9 7033638 7033679 -110828948 - AluJ/F(R)AM SINE Alu -114 197 157 1177 174 0 15 chr9 7033681 7033876 -110828751 - AluJo SINE Alu -119 193 2 251 234 78 13 chr9 7034243 7034320 -110828307 + L1MC/D LINE L1 5800 5881 -1927 387 261 203 39 chr9 7035862 7036069 -110826558 + MIR SINE MIR 12 252 -10 21 36 0 0 chr9 7036740 7036768 -110825859 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr9 7036919 7036959 -110825668 + AT_rich Low_complexity Low_complexity 1 40 0 522 280 63 0 chr9 7037417 7037560 -110825067 - MIR SINE MIR -3 259 108 267 174 167 72 chr9 7037589 7037727 -110824900 + L1ME4a LINE L1 5314 5464 -2344 486 275 53 8 chr9 7037804 7038048 -110824579 + L1ME4a LINE L1 5595 5849 -272 2118 110 3 41 chr9 7040977 7041294 -110821333 - AluSp SINE Alu -8 305 1 1335 210 24 66 chr9 7041500 7041881 -110820746 + MLT1A1 LTR MaLR 1 365 0 839 138 239 0 chr9 7043315 7043482 -110819145 - AluJo SINE Alu -105 207 1 1854 273 150 16 chr9 7044159 7044925 -110817702 + L2 LINE L2 837 1705 -1609 5296 116 15 29 chr9 7044947 7045781 -110816846 - L1PA16 LINE L1 -13 6153 5309 2199 103 3 7 chr9 7045781 7046073 -110816554 - AluSg SINE Alu -19 291 1 5296 116 15 29 chr9 7046073 7046141 -110816486 - L1PA16 LINE L1 -857 5309 5242 599 59 0 12 chr9 7046141 7046226 -110816401 + (TTTC)n Simple_repeat Simple_repeat 1 84 0 5296 116 15 29 chr9 7046226 7046340 -110816287 - L1PA16 LINE L1 -924 5242 5160 310 325 57 46 chr9 7046341 7046451 -110816176 + L2 LINE L2 1701 1808 -1506 501 62 0 0 chr9 7046451 7046516 -110816111 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 2115 111 4 0 chr9 7046517 7046797 -110815830 - AluSq SINE Alu -32 281 1 310 325 57 46 chr9 7046797 7046878 -110815749 + L2 LINE L2 1807 1896 -1418 1076 190 143 60 chr9 7046892 7047277 -110815350 - LTR8A LTR ERV1 0 727 311 1380 121 43 5 chr9 7047278 7047485 -110815142 + AluSg/x SINE Alu 77 291 -21 929 160 166 22 chr9 7047523 7047858 -110814769 - LTR29 LTR ERV1 -198 424 1 1946 276 122 41 chr9 7047877 7048940 -110813687 + L2 LINE L2 1937 3090 -223 499 224 65 0 chr9 7048942 7049049 -110813578 + L2 LINE L2 3200 3313 0 1842 185 0 0 chr9 7049387 7049685 -110812942 + AluJo SINE Alu 1 298 -14 22 35 0 0 chr9 7050151 7050180 -110812447 + AT_rich Low_complexity Low_complexity 1 29 0 260 252 41 16 chr9 7051196 7051319 -110811308 + LTR33 LTR ERVL 1 126 -395 241 294 55 40 chr9 7051407 7051608 -110811019 + LTR33 LTR ERVL 303 506 -15 303 286 29 0 chr9 7052320 7052390 -110810237 + C-rich Low_complexity Low_complexity 3 74 0 450 216 29 0 chr9 7052411 7052513 -110810114 - FLAM_C SINE Alu -26 107 3 459 0 0 0 chr9 7054012 7054063 -110808564 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 1954 153 0 0 chr9 7054064 7054352 -110808275 - AluSx SINE Alu -24 288 1 235 350 91 0 chr9 7054736 7054879 -110807748 + L2 LINE L2 1813 1968 -1346 517 280 242 22 chr9 7054883 7055247 -110807380 + L2 LINE L2 1723 2166 -1148 308 233 100 33 chr9 7055249 7055369 -110807258 + L2 LINE L2 3159 3286 -27 21 0 0 0 chr9 7055522 7055543 -110807084 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr9 7056388 7056413 -110806214 + (T)n Simple_repeat Simple_repeat 1 25 0 207 305 102 31 chr9 7056527 7056655 -110805972 - MIR SINE MIR -92 170 34 365 187 78 12 chr9 7057409 7057575 -110805052 + (TA)n Simple_repeat Simple_repeat 2 178 0 332 199 54 36 chr9 7057520 7057686 -110804941 + (TATAA)n Simple_repeat Simple_repeat 5 173 0 * 251 254 45 0 chr9 7057768 7057835 -110804792 - MER5B DNA MER1_type -7 171 102 1915 170 0 0 chr9 7058429 7058723 -110803904 - AluJb SINE Alu -18 294 1 223 203 95 0 chr9 7059522 7059596 -110803031 - MIR SINE MIR -132 130 50 722 220 56 33 chr9 7059619 7059833 -110802794 + MER20 DNA MER1_type 1 219 0 324 143 0 0 chr9 7060771 7060827 -110801800 - Alu SINE Alu 0 300 245 23 0 0 0 chr9 7061077 7061100 -110801527 + AT_rich Low_complexity Low_complexity 1 23 0 1769 83 36 7 chr9 7061100 7061378 -110801249 - L1MA5A LINE L1 -1 6296 6011 420 276 70 68 chr9 7062071 7062455 -110800172 + L1ME4a LINE L1 5477 5861 -260 189 107 0 0 chr9 7062462 7062490 -110800137 + (TA)n Simple_repeat Simple_repeat 1 28 0 2223 100 3 0 chr9 7062510 7062799 -110799828 - AluSq SINE Alu -23 290 1 2631 85 26 8 chr9 7066073 7066461 -110796166 + L1MA1 LINE L1 5908 6302 0 718 231 75 6 chr9 7066597 7066770 -110795857 + MER58A DNA MER1_type 39 223 -1 21 0 0 0 chr9 7068143 7068164 -110794463 + AT_rich Low_complexity Low_complexity 1 21 0 2112 122 3 10 chr9 7068362 7068658 -110793969 + AluSx SINE Alu 1 294 -18 711 227 91 91 chr9 7069236 7069796 -110792831 - MER69 DNA AcHobo -207 2319 1760 486 281 52 30 chr9 7069837 7070068 -110792559 - MER69 DNA AcHobo -914 312 77 26 0 0 0 chr9 7070495 7070521 -110792106 + AT_rich Low_complexity Low_complexity 1 26 0 349 290 84 39 chr9 7070673 7070828 -110791799 + MER5B DNA MER1_type 17 178 0 10115 46 18 32 chr9 7071432 7072727 -110789900 - SVA Other Other -6 1380 104 1430 183 129 0 chr9 7072970 7073233 -110789394 - AluJb SINE Alu -5 297 1 1306 206 14 27 chr9 7073487 7073779 -110788848 + AluJb SINE Alu 1 288 -24 260 217 0 0 chr9 7074204 7074264 -110788363 + A-rich Low_complexity Low_complexity 1 60 0 360 0 0 0 chr9 7074337 7074377 -110788250 + (CA)n Simple_repeat Simple_repeat 2 41 0 287 254 0 44 chr9 7074640 7074754 -110787873 - Charlie8 DNA MER1_type -2258 159 51 274 238 12 0 chr9 7074763 7074843 -110787784 + (CA)n Simple_repeat Simple_repeat 2 82 0 576 110 134 0 chr9 7075242 7075369 -110787258 + L1P LINE L1 5254 5397 -764 948 146 139 0 chr9 7075369 7075527 -110787100 + AluSx SINE Alu 19 198 -114 24 32 0 0 chr9 7075871 7075902 -110786725 + AT_rich Low_complexity Low_complexity 1 31 0 203 214 34 51 chr9 7076423 7076540 -110786087 + (CATATA)n Simple_repeat Simple_repeat 3 117 0 2093 118 0 0 chr9 7076699 7076987 -110785640 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr9 7076987 7077008 -110785619 + AT_rich Low_complexity Low_complexity 1 21 0 271 156 0 0 chr9 7077499 7077544 -110785083 + Alu SINE Alu 2 46 -254 29 0 0 0 chr9 7077552 7077581 -110785046 + AT_rich Low_complexity Low_complexity 1 29 0 532 274 117 48 chr9 7077768 7077998 -110784629 - MIR SINE MIR -11 251 6 1331 110 0 6 chr9 7079113 7079295 -110783332 + AluSg/x SINE Alu 119 299 -11 28 29 0 0 chr9 7079808 7079843 -110782784 + AT_rich Low_complexity Low_complexity 1 35 0 2414 69 0 10 chr9 7079949 7080253 -110782374 + AluSc SINE Alu 1 301 -8 1136 153 6 0 chr9 7080253 7080430 -110782197 + AluJb SINE Alu 134 311 -1 345 47 0 0 chr9 7080485 7080528 -110782099 + (TG)n Simple_repeat Simple_repeat 1 43 0 647 174 16 0 chr9 7080528 7080649 -110781978 + L1MC1 LINE L1 6210 6332 -1 1128 151 170 0 chr9 7080769 7080987 -110781640 - AluJo SINE Alu -57 255 1 1539 166 95 14 chr9 7082315 7082598 -110780029 - AluJo SINE Alu -6 306 1 311 188 16 16 chr9 7082861 7082925 -110779702 - MER20 DNA MER1_type -154 65 2 186 43 0 0 chr9 7083753 7083776 -110778851 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 621 260 158 0 chr9 7085051 7085228 -110777399 + MIR SINE MIR 34 238 -24 21 36 0 0 chr9 7086068 7086096 -110776531 + AT_rich Low_complexity Low_complexity 1 28 0 3754 60 0 4 chr9 7086128 7086611 -110776016 - L1PA5 LINE L1 0 6154 5674 1873 57 0 4 chr9 7086611 7086841 -110775786 + AluY SINE Alu 73 301 -10 1171 108 0 0 chr9 7086848 7087005 -110775622 + AluSg/x SINE Alu 136 292 -18 269 193 24 12 chr9 7087323 7087406 -110775221 + (TA)n Simple_repeat Simple_repeat 2 85 0 794 283 87 49 chr9 7087479 7087973 -110774654 - MLT2B1 LTR ERVL -7 513 1 467 198 0 0 chr9 7087975 7088076 -110774551 + L1M4 LINE L1 3821 3921 -2225 414 268 82 64 chr9 7088137 7088230 -110774397 + L1M4 LINE L1 4013 4103 -2043 2257 50 43 0 chr9 7088230 7088509 -110774118 - AluYa5 SINE Alu -20 291 1 414 268 82 64 chr9 7088509 7088635 -110773992 + L1M4 LINE L1 4103 4236 -1910 634 282 60 23 chr9 7088791 7089177 -110773450 + L1M4 LINE L1 4945 5344 -802 2177 113 3 3 chr9 7089181 7089482 -110773145 + AluSx SINE Alu 1 301 -11 218 328 89 89 chr9 7089859 7090106 -110772521 + MIR SINE MIR 13 259 -3 23 68 0 0 chr9 7090125 7090169 -110772458 + AT_rich Low_complexity Low_complexity 1 44 0 668 186 34 8 chr9 7090240 7090358 -110772269 + FLAM_C SINE Alu 3 123 -20 1977 144 3 0 chr9 7090991 7091276 -110771351 - AluSx SINE Alu -26 286 1 21 0 0 0 chr9 7091754 7091775 -110770852 + AT_rich Low_complexity Low_complexity 1 21 0 371 246 39 14 chr9 7091904 7092101 -110770526 - MLT1K LTR MaLR -170 418 165 21 57 0 0 chr9 7093083 7093118 -110769509 + AT_rich Low_complexity Low_complexity 1 35 0 377 312 111 11 chr9 7093965 7094154 -110768473 - L2 LINE L2 -6 3307 3100 180 152 0 0 chr9 7094296 7094329 -110768298 + (TA)n Simple_repeat Simple_repeat 1 33 0 712 189 0 15 chr9 7095253 7095385 -110767242 - FLAM_C SINE Alu -13 130 1 321 262 8 74 chr9 7096113 7096235 -110766392 + MIR SINE MIR 60 173 -89 2093 121 7 0 chr9 7096401 7096698 -110765929 - AluSx SINE Alu -13 299 1 277 241 0 100 chr9 7097496 7097611 -110765016 + MIR SINE MIR 34 137 -71 2141 114 14 0 chr9 7097806 7098095 -110764532 + AluSx SINE Alu 7 299 -13 802 122 0 0 chr9 7099053 7099168 -110763459 - AluJo SINE Alu -176 136 22 21 0 0 0 chr9 7099343 7099364 -110763263 + AT_rich Low_complexity Low_complexity 1 21 0 583 280 0 14 chr9 7100133 7100276 -110762351 - MIR SINE MIR -74 188 48 1307 186 29 7 chr9 7100603 7100877 -110761750 - MLT1-int LTR MaLR -456 915 636 496 193 158 0 chr9 7103872 7104043 -110758584 - L1ME4a LINE L1 0 6121 5924 495 264 57 16 chr9 7104434 7104627 -110758000 - MER112 DNA MER1_type -58 202 2 659 179 8 0 chr9 7105496 7105613 -110757014 + FLAM_C SINE Alu 1 118 -15 486 0 0 0 chr9 7105615 7105669 -110756958 + (CA)n Simple_repeat Simple_repeat 2 55 0 211 191 34 34 chr9 7105841 7105930 -110756697 + T-rich Low_complexity Low_complexity 2 90 0 337 301 164 44 chr9 7107061 7107403 -110755224 + L2 LINE L2 2465 2847 -467 293 336 22 111 chr9 7107458 7107684 -110754943 - L2 LINE L2 -108 3164 2959 2022 139 0 23 chr9 7107738 7108047 -110754580 - AluSx SINE Alu -10 302 1 213 213 0 0 chr9 7108262 7108309 -110754318 + (TG)n Simple_repeat Simple_repeat 2 48 0 951 170 16 6 chr9 7108971 7109153 -110753474 - L1MD1 LINE L1 -5 6237 6054 1706 162 29 35 chr9 7109931 7110245 -110752382 + AluJo SINE Alu 1 312 0 483 18 0 0 chr9 7110716 7110772 -110751855 + (TCCA)n Simple_repeat Simple_repeat 3 58 0 722 308 106 22 chr9 7110773 7111140 -110751487 + L2 LINE L2 2884 3281 -32 1577 180 10 17 chr9 7111841 7112135 -110750492 - AluJo SINE Alu -20 292 1 1554 178 20 49 chr9 7113136 7113440 -110749187 - AluJb SINE Alu -15 297 3 668 200 0 8 chr9 7113810 7113940 -110748687 + FLAM_A SINE Alu 1 129 -4 1734 166 52 28 chr9 7116021 7116346 -110746281 - MER1B DNA MER1_type -6 333 1 249 98 0 0 chr9 7117384 7117425 -110745202 + (CA)n Simple_repeat Simple_repeat 2 42 0 254 253 27 73 chr9 7117485 7117635 -110744992 + L1ME LINE L1 5742 5884 -237 2472 58 0 0 chr9 7117733 7118026 -110744601 - AluY SINE Alu -18 293 1 902 89 7 30 chr9 7118048 7118183 -110744444 - L1PB4 LINE L1 -13 6143 6012 253 284 0 11 chr9 7118950 7119045 -110743582 + L1MEd LINE L1 18 111 -6008 222 321 0 37 chr9 7119127 7119208 -110743419 + MIR SINE MIR 116 193 -69 226 240 53 67 chr9 7119584 7119659 -110742968 + L1MEd LINE L1 549 622 -5497 284 273 121 15 chr9 7119686 7119818 -110742809 + MIR3 SINE MIR 31 176 -32 2045 133 0 7 chr9 7120573 7120905 -110741722 + AluSx SINE Alu 1 312 0 32 43 0 0 chr9 7121396 7121442 -110741185 + AT_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr9 7122239 7122271 -110740356 + AT_rich Low_complexity Low_complexity 1 32 0 201 219 24 0 chr9 7122770 7122811 -110739816 - MIR SINE MIR -151 111 70 2084 130 0 0 chr9 7123647 7123940 -110738687 - AluSx SINE Alu -13 299 7 533 215 75 5 chr9 7124068 7124254 -110738373 - L1MA7 LINE L1 0 6291 6093 398 339 0 8 chr9 7124497 7124618 -110738009 - MIR SINE MIR -122 140 21 1862 145 0 17 chr9 7124629 7124919 -110737708 - AluSx SINE Alu -27 285 1 22 0 0 0 chr9 7125069 7125091 -110737536 + AT_rich Low_complexity Low_complexity 1 22 0 2833 119 54 29 chr9 7126629 7126907 -110735720 - LTR22B LTR ERVK 0 492 195 2420 80 3 0 chr9 7126907 7127206 -110735421 + AluSq SINE Alu 1 300 -13 2833 119 54 29 chr9 7127206 7127407 -110735220 - LTR22B LTR ERVK -296 196 1 27 0 0 0 chr9 7128685 7128712 -110733915 + AT_rich Low_complexity Low_complexity 1 27 0 568 181 49 62 chr9 7129407 7129650 -110732977 - Charlie1 DNA MER1_type 0 2761 2522 1504 209 16 16 chr9 7129658 7129979 -110732648 + L1M3e LINE L1 2 322 -6708 2538 238 39 62 chr9 7129979 7131025 -110731602 + L1M3e LINE L1 1216 2245 -4792 1511 270 109 10 chr9 7131026 7131522 -110731105 - Charlie1a DNA MER1_type -907 548 4 1929 163 116 2 chr9 7131539 7131943 -110730684 + Tigger2 DNA MER2_type 1 450 -2268 2007 142 10 10 chr9 7132517 7132826 -110729801 + AluSq SINE Alu 3 311 -2 191 286 14 43 chr9 7132892 7132962 -110729665 + L2 LINE L2 3201 3268 -4 1317 188 7 44 chr9 7133824 7134095 -110728532 - AluJo SINE Alu -14 298 38 306 0 0 0 chr9 7136669 7136703 -110725924 + (CA)n Simple_repeat Simple_repeat 2 35 0 39 50 0 0 chr9 7137234 7137294 -110725333 + AT_rich Low_complexity Low_complexity 1 60 0 2434 82 0 0 chr9 7137873 7138176 -110724451 - AluY SINE Alu -8 303 1 2124 127 3 0 chr9 7138176 7138475 -110724152 - AluSx SINE Alu -11 301 1 1949 164 0 3 chr9 7138686 7138985 -110723642 - AluJo SINE Alu -13 299 2 22 35 0 0 chr9 7139230 7139259 -110723368 + AT_rich Low_complexity Low_complexity 1 29 0 1664 170 112 3 chr9 7139799 7140111 -110722516 - MER7A DNA MER2_type 0 346 3 22 0 0 0 chr9 7142309 7142331 -110720296 + AT_rich Low_complexity Low_complexity 1 22 0 1710 137 19 55 chr9 7142332 7142711 -110719916 - L1MA2 LINE L1 -3 7720 7356 301 70 47 0 chr9 7142721 7142764 -110719863 - L1M LINE L1 -895 6826 6782 189 0 0 0 chr9 7142778 7142799 -110719828 + (TG)n Simple_repeat Simple_repeat 2 22 0 20479 170 28 16 chr9 7142803 7142814 -110719813 - L1MA2 LINE L1 -762 6803 6794 2221 83 24 0 chr9 7142814 7143102 -110719525 - AluSx SINE Alu -17 295 1 20479 170 28 16 chr9 7143102 7145999 -110716628 - L1MA2 LINE L1 -771 6794 3933 5598 39 3 0 chr9 7145999 7146673 -110715954 - L1PA4 LINE L1 -8 6147 5472 20479 170 28 16 chr9 7146673 7147580 -110715047 - L1MA2 LINE L1 -3632 3933 3038 2033 142 3 3 chr9 7147580 7147891 -110714736 + AluSx SINE Alu 1 311 -1 20479 170 28 16 chr9 7147891 7150783 -110711844 - L1MA2 LINE L1 -4527 3038 19 39 60 0 0 chr9 7151203 7151270 -110711357 + AT_rich Low_complexity Low_complexity 1 67 0 1638 156 28 0 chr9 7152013 7152302 -110710325 + L1MC1 LINE L1 6037 6333 0 402 57 0 0 chr9 7152780 7152833 -110709794 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 2053 117 7 0 chr9 7152835 7153118 -110709509 - AluSx SINE Alu -27 285 1 213 196 0 0 chr9 7153261 7153307 -110709320 + (TA)n Simple_repeat Simple_repeat 1 46 0 222 37 0 0 chr9 7153334 7153361 -110709266 + (TG)n Simple_repeat Simple_repeat 2 28 0 226 306 68 41 chr9 7154257 7154404 -110708223 - MIR3 SINE MIR -46 162 12 23 0 0 0 chr9 7154800 7154823 -110707804 + AT_rich Low_complexity Low_complexity 1 23 0 5483 140 45 19 chr9 7155739 7156658 -110705969 - L1MA5A LINE L1 0 6297 5403 1874 169 0 6 chr9 7156658 7156972 -110705655 - AluJb SINE Alu 0 312 1 5483 140 45 19 chr9 7156972 7157889 -110704738 - L1MA5A LINE L1 -894 5403 4408 253 224 198 35 chr9 7158417 7158533 -110704094 + L2 LINE L2 3179 3313 0 259 370 8 0 chr9 7160325 7160444 -110702183 - L1MC/D LINE L1 -2153 6450 6331 241 241 36 36 chr9 7160751 7160863 -110701764 - L1MC/D LINE L1 -1070 5871 5760 512 278 159 48 chr9 7160944 7161145 -110701482 - L1MC/D LINE L1 -5082 1849 1672 2205 155 63 17 chr9 7161145 7161559 -110701068 - Tigger2a DNA MER2_type 0 434 2 512 278 159 48 chr9 7161559 7161709 -110700918 - L1MC/D LINE L1 -5259 1672 1459 544 223 107 22 chr9 7161709 7161933 -110700694 - L1MEd LINE L1 -4313 1997 1755 342 169 0 0 chr9 7161954 7162019 -110700608 + CT-rich Low_complexity Low_complexity 4 68 0 423 92 0 0 chr9 7162028 7162093 -110700534 + (TG)n Simple_repeat Simple_repeat 2 66 0 937 305 45 34 chr9 7162093 7162744 -110699883 - L1MEd LINE L1 -4555 1755 1056 2011 136 33 9 chr9 7162752 7163084 -110699543 - MER2 DNA MER2_type -5 340 1 449 291 58 16 chr9 7163173 7163431 -110699196 - L1MC/D LINE L1 -5041 1382 1114 404 265 68 0 chr9 7163810 7163927 -110698700 - MIR SINE MIR -98 164 40 530 280 108 11 chr9 7164523 7164709 -110697918 + MER58A DNA MER1_type 21 224 0 290 370 62 0 chr9 7164710 7164872 -110697755 + MIR SINE MIR 80 251 -11 196 320 144 49 chr9 7165609 7165893 -110696734 - L2 LINE L2 -2 3311 3001 639 303 213 15 chr9 7166088 7166695 -110695932 - L2 LINE L2 -684 2630 1904 338 300 86 7 chr9 7169277 7169417 -110693210 + Charlie8 DNA MER1_type 7 157 -2260 232 340 186 16 chr9 7169836 7170083 -110692544 + L3b LINE CR1 1284 1572 -11 470 183 8 11 chr9 7173522 7173670 -110688957 - MER20 DNA MER1_type -9 210 3 215 191 0 0 chr9 7174013 7174055 -110688572 + L2 LINE L2 3271 3312 -1 438 36 0 0 chr9 7174521 7174577 -110688050 + (GA)n Simple_repeat Simple_repeat 2 57 0 200 200 0 0 chr9 7175974 7176009 -110686618 + CT-rich Low_complexity Low_complexity 2 36 0 1613 114 0 4 chr9 7176639 7176867 -110685760 + AluSc SINE Alu 76 302 -7 258 229 383 11 chr9 7179100 7179275 -110683352 + MIR SINE MIR 21 260 -2 411 298 39 29 chr9 7180011 7180216 -110682411 + MER63A DNA MER1_type 4 210 0 1984 230 93 5 chr9 7180216 7180807 -110681820 + Charlie1 DNA MER1_type 1466 2108 -653 700 163 0 0 chr9 7180812 7180935 -110681692 - AluJo SINE Alu -7 305 183 * 724 181 7 21 chr9 7180926 7181070 -110681557 - AluJo SINE Alu -170 142 1 2418 164 93 21 chr9 7181078 7181683 -110680944 + Charlie1 DNA MER1_type 2114 2761 0 2234 92 0 0 chr9 7182114 7182447 -110680180 - AluSc SINE Alu 0 333 1 246 274 56 68 chr9 7182687 7182939 -110679688 - HAL1 LINE L1 -156 2351 2103 312 250 24 0 chr9 7182941 7183025 -110679602 - HAL1 LINE L1 -540 1967 1882 361 278 112 0 chr9 7183050 7183219 -110679408 - HAL1 LINE L1 -1602 905 718 1174 293 75 28 chr9 7183225 7183646 -110678981 - HAL1 LINE L1 -1828 679 279 2224 93 0 3 chr9 7183646 7183935 -110678692 - AluY SINE Alu -23 288 1 1174 293 75 28 chr9 7183935 7184041 -110678586 - HAL1 LINE L1 -2228 279 179 1719 194 13 7 chr9 7184041 7184351 -110678276 - AluJb SINE Alu 0 312 1 1174 293 75 28 chr9 7184351 7184464 -110678163 - HAL1 LINE L1 -2328 179 8 27 0 0 0 chr9 7184902 7184929 -110677698 + AT_rich Low_complexity Low_complexity 1 27 0 230 167 0 21 chr9 7185183 7185231 -110677396 - L2 LINE L2 0 3313 3267 396 230 40 55 chr9 7185632 7185832 -110676795 + Charlie5 DNA MER1_type 1 197 -2415 751 180 64 21 chr9 7185836 7186069 -110676558 + Charlie5 DNA MER1_type 2352 2594 -18 21 0 0 0 chr9 7189294 7189315 -110673312 + AT_rich Low_complexity Low_complexity 1 21 0 2363 72 0 3 chr9 7189471 7189763 -110672864 - AluY SINE Alu -20 291 1 257 354 53 0 chr9 7190139 7190252 -110672375 + MIR SINE MIR 11 129 -133 2443 102 0 0 chr9 7190351 7190664 -110671963 - AluSq SINE Alu 0 313 1 236 331 55 8 chr9 7190720 7190847 -110671780 + MIR SINE MIR 130 262 0 635 167 0 0 chr9 7191083 7191179 -110671448 + FRAM SINE Alu 51 146 -30 195 42 0 0 chr9 7191181 7191205 -110671422 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 340 283 101 0 chr9 7191205 7191343 -110671284 - L1MD2 LINE L1 -13 6346 6195 333 300 77 15 chr9 7191439 7191766 -110670861 + L1ME1 LINE L1 1868 2214 -4182 3886 248 79 35 chr9 7191775 7193488 -110669139 + L1ME1 LINE L1 3445 5351 -884 302 95 0 0 chr9 7193488 7193530 -110669097 + 5S rRNA rRNA 1 42 -79 3886 248 79 35 chr9 7193530 7194424 -110668203 + L1ME1 LINE L1 5351 6204 -31 488 156 0 0 chr9 7194480 7194570 -110668057 - L1MA6 LINE L1 0 6300 6211 189 238 111 0 chr9 7194967 7195030 -110667597 + MIR SINE MIR 178 247 -15 196 268 61 24 chr9 7195069 7195151 -110667476 - MIR3 SINE MIR -118 90 6 2018 149 0 10 chr9 7195831 7196133 -110666494 - AluSx SINE Alu -12 300 2 1434 177 53 61 chr9 7196974 7197398 -110665229 + MSTB1 LTR MaLR 3 416 -16 477 114 0 0 chr9 7197477 7197547 -110665080 - AluSp/q SINE Alu -10 303 234 214 373 36 0 chr9 7197945 7198055 -110664572 - MIR SINE MIR -146 116 3 195 129 0 0 chr9 7198121 7198152 -110664475 + (CAA)n Simple_repeat Simple_repeat 3 33 0 359 291 68 0 chr9 7199148 7199265 -110663362 - MIR SINE MIR -76 186 62 22 0 0 0 chr9 7199756 7199778 -110662849 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr9 7199845 7199866 -110662761 + AT_rich Low_complexity Low_complexity 1 21 0 567 209 0 9 chr9 7200481 7200596 -110662031 - MER68 LTR ERV1 -6 556 443 1510 140 34 23 chr9 7200609 7200874 -110661753 - MER68 LTR ERV1 -285 277 10 2043 142 7 0 chr9 7200986 7201289 -110661338 - AluSx SINE Alu -7 305 1 531 294 62 5 chr9 7201415 7201626 -110661001 + Charlie2 DNA MER1_type 12 234 -2628 601 266 131 26 chr9 7201767 7202132 -110660495 + MLT1J1 LTR MaLR 16 422 -28 760 151 45 50 chr9 7202183 7202382 -110660245 + Charlie2a DNA MER1_type 1466 1663 -1199 1028 199 50 9 chr9 7204823 7205044 -110657583 - MER46A DNA MER2_type -1 235 6 1686 175 42 9 chr9 7205047 7205378 -110657249 - MER7A DNA MER2_type -6 340 1 333 0 0 0 chr9 7205379 7205416 -110657211 + (TG)n Simple_repeat Simple_repeat 2 38 0 477 260 106 31 chr9 7205851 7206078 -110656549 + MLT1I LTR MaLR 141 384 -25 445 287 154 0 chr9 7206281 7206424 -110656203 + MIR SINE MIR 70 234 -28 512 344 75 40 chr9 7206445 7206843 -110655784 - L2 LINE L2 -10 3262 2851 248 252 207 9 chr9 7206855 7206966 -110655661 + MIR3 SINE MIR 9 141 -67 26 0 0 0 chr9 7207328 7207354 -110655273 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr9 7207509 7207540 -110655087 + AT_rich Low_complexity Low_complexity 1 31 0 2318 87 0 7 chr9 7207541 7207839 -110654788 + AluSx SINE Alu 1 296 -16 254 225 84 0 chr9 7208464 7208535 -110654092 + Charlie2 DNA MER1_type 93 169 -2693 2150 215 116 26 chr9 7208684 7209580 -110653047 + Charlie2 DNA MER1_type 1847 2823 -39 373 243 83 95 chr9 7209621 7209790 -110652837 + MER5A DNA MER1_type 1 167 -22 183 80 0 0 chr9 7210507 7210532 -110652095 + (A)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr9 7213239 7213260 -110649367 + AT_rich Low_complexity Low_complexity 1 21 0 215 238 284 4 chr9 7213860 7213988 -110648639 - MIR SINE MIR -51 211 41 27 0 0 0 chr9 7215030 7215057 -110647570 + AT_rich Low_complexity Low_complexity 1 27 0 604 190 127 16 chr9 7215259 7215482 -110647145 - Charlie4 DNA MER1_type -20 1941 225 307 319 67 22 chr9 7215654 7215789 -110646838 - MIR SINE MIR -15 247 107 353 0 0 0 chr9 7216017 7216061 -110646566 - L1PA3 LINE L1 -3 6152 6109 487 228 62 28 chr9 7221287 7221432 -110641195 + MER5A DNA MER1_type 4 153 -36 201 206 27 27 chr9 7221541 7221614 -110641013 + T-rich Low_complexity Low_complexity 6 78 0 713 178 39 31 chr9 7221787 7221916 -110640711 + AluJo SINE Alu 6 135 -177 2212 124 0 0 chr9 7222082 7222381 -110640246 - AluSx SINE Alu -13 299 1 267 152 0 0 chr9 7222487 7222533 -110640094 + T-rich Low_complexity Low_complexity 3 48 0 216 0 0 0 chr9 7224051 7224075 -110638552 + (T)n Simple_repeat Simple_repeat 1 24 0 405 311 76 58 chr9 7225626 7225851 -110636776 + L2 LINE L2 3044 3272 0 313 346 53 0 chr9 7225905 7226038 -110636589 - MER91C DNA MER1_type 0 140 1 440 291 93 13 chr9 7226987 7227138 -110635489 + MIR SINE MIR 14 176 -86 218 167 0 0 chr9 7227184 7227220 -110635407 + (CTG)n Simple_repeat Simple_repeat 3 38 0 264 330 10 10 chr9 7227247 7227344 -110635283 - MIR SINE MIR -108 154 58 31 26 0 0 chr9 7228389 7228427 -110634200 + AT_rich Low_complexity Low_complexity 1 38 0 687 196 0 0 chr9 7228429 7228536 -110634091 - FLAM_C SINE Alu -36 107 1 225 0 0 0 chr9 7229589 7229614 -110633013 + (TTG)n Simple_repeat Simple_repeat 3 27 0 2013 154 0 0 chr9 7229973 7230278 -110632349 - AluJb SINE Alu -7 305 1 22 0 0 0 chr9 7231004 7231026 -110631601 + AT_rich Low_complexity Low_complexity 1 22 0 1462 133 246 13 chr9 7231552 7231853 -110630774 + THE1C LTR MaLR 5 375 0 290 270 69 22 chr9 7231865 7232027 -110630600 - L1MC5 LINE L1 -975 6833 6671 23 0 0 0 chr9 7232148 7232171 -110630456 + AT_rich Low_complexity Low_complexity 1 23 0 777 202 32 87 chr9 7232885 7232978 -110629649 - MIR SINE MIR -10 252 155 1122 184 108 0 chr9 7232978 7233190 -110629437 + MER46A DNA MER2_type 2 236 0 777 202 32 87 chr9 7233190 7233349 -110629278 - MIR SINE MIR -107 155 14 237 308 88 22 chr9 7233333 7233424 -110629203 - L2 LINE L2 -343 2970 2874 * 321 211 26 0 chr9 7235777 7235853 -110626774 - MER116 DNA Mariner -2 78 1 1512 161 93 21 chr9 7236565 7236856 -110625771 + AluJo SINE Alu 1 312 0 281 316 102 21 chr9 7238694 7238881 -110623746 - MIR SINE MIR 0 262 61 410 208 0 10 chr9 7239267 7239368 -110623259 - L1M4 LINE L1 -1424 4722 4623 378 0 0 0 chr9 7239368 7239410 -110623217 + (CA)n Simple_repeat Simple_repeat 2 43 0 619 220 125 102 chr9 7241091 7241514 -110621113 + Charlie4a DNA MER1_type 56 488 -20 290 343 96 36 chr9 7241602 7241768 -110620859 + L2 LINE L2 3076 3251 -21 305 186 119 51 chr9 7242728 7242846 -110619781 - L1ME4a LINE L1 -46 6075 5950 1801 219 88 24 chr9 7242851 7243349 -110619278 - MLT1H LTR MaLR -19 530 1 2493 119 111 3 chr9 7243769 7243981 -110618646 - MSTA LTR MaLR 0 428 240 243 0 0 0 chr9 7243981 7244008 -110618619 + (CA)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr9 7244007 7244027 -110618600 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2493 119 111 3 chr9 7244008 7244200 -110618427 - MSTA LTR MaLR -188 240 1 194 271 45 98 chr9 7244219 7244352 -110618275 + MIR SINE MIR 64 189 -73 186 300 118 64 chr9 7245280 7245390 -110617237 - L2 LINE L2 0 3272 3157 325 200 100 20 chr9 7245815 7245915 -110616712 - MIR SINE MIR -82 180 73 217 285 55 64 chr9 7246771 7247025 -110615602 + L2 LINE L2 2726 2960 -312 208 179 0 0 chr9 7247789 7247828 -110614799 - MIR SINE MIR -6 256 218 289 181 0 84 chr9 7247858 7247941 -110614686 - L1M4 LINE L1 -5870 672 597 2500 267 100 38 chr9 7248172 7248754 -110613873 + L1MC4 LINE L1 6459 7003 -1039 387 119 0 0 chr9 7248754 7248821 -110613806 + (TGGA)n Simple_repeat Simple_repeat 4 70 0 2500 267 100 38 chr9 7248821 7249487 -110613140 + L1MC4 LINE L1 7003 7785 -257 228 286 88 0 chr9 7249484 7249575 -110613052 - L1MC4 LINE L1 -1339 6703 6605 * 314 136 0 169 chr9 7249581 7249694 -110612933 + L1MC4 LINE L1 7900 8040 -2 204 304 0 0 chr9 7249749 7249805 -110612822 + T-rich Low_complexity Low_complexity 2 57 0 536 140 131 19 chr9 7250183 7250290 -110612337 - MSTC LTR MaLR -309 119 1 234 91 0 0 chr9 7250512 7250545 -110612082 + (TG)n Simple_repeat Simple_repeat 2 34 0 270 324 39 39 chr9 7251275 7251377 -110611250 - L2 LINE L2 -1 3271 3170 761 277 37 16 chr9 7251492 7251734 -110610893 - MIR SINE MIR 0 262 16 1812 144 0 33 chr9 7252496 7252802 -110609825 - AluJo SINE Alu -8 304 9 603 119 83 0 chr9 7253125 7253234 -110609393 - MLT2B1 LTR ERVL 0 520 403 903 121 0 0 chr9 7253235 7253359 -110609268 - AluJb SINE Alu -188 124 1 190 297 0 62 chr9 7257343 7257407 -110605220 - L2 LINE L2 -34 3238 3179 372 175 62 0 chr9 7257837 7257917 -110604710 - L1M4 LINE L1 -852 5294 5210 2629 189 32 15 chr9 7257928 7258592 -110604035 - L1ME LINE L1 -369 5797 5123 23 0 0 0 chr9 7258727 7258750 -110603877 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr9 7259810 7259833 -110602794 + AT_rich Low_complexity Low_complexity 1 23 0 1849 163 0 16 chr9 7260274 7260580 -110602047 + AluJo SINE Alu 1 301 -11 1756 183 0 10 chr9 7260731 7261037 -110601590 + AluJb SINE Alu 1 303 -9 1667 147 0 11 chr9 7261543 7261808 -110600819 - MER50 LTR ERV1 -38 696 435 1319 129 26 35 chr9 7261805 7262037 -110600590 - MER50 LTR ERV1 -504 230 1 * 219 158 35 18 chr9 7262059 7262116 -110600511 + T-rich Low_complexity Low_complexity 1 58 0 374 379 8 16 chr9 7262422 7262546 -110600081 - L2 LINE L2 -21 3251 3129 753 298 109 33 chr9 7262727 7262921 -110599706 - L2 LINE L2 -457 2857 2679 1286 126 10 20 chr9 7262921 7263089 -110599538 + MER107 DNA MER1_type 1 168 -29 182 36 0 36 chr9 7263089 7263117 -110599510 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1286 126 10 20 chr9 7263117 7263147 -110599480 + MER107 DNA MER1_type 168 197 0 753 298 109 33 chr9 7263147 7263439 -110599188 - L2 LINE L2 -635 2679 2334 23 0 0 0 chr9 7263837 7263860 -110598767 + AT_rich Low_complexity Low_complexity 1 23 0 706 169 81 16 chr9 7264030 7264154 -110598473 - FLAM_C SINE Alu -10 133 2 189 0 0 0 chr9 7264595 7264616 -110598011 + (TG)n Simple_repeat Simple_repeat 2 22 0 686 152 0 139 chr9 7265848 7266013 -110596614 - FLAM_C SINE Alu 0 143 2 241 258 135 0 chr9 7266211 7266300 -110596327 + MIR3 SINE MIR 85 185 -23 675 310 82 71 chr9 7267257 7267792 -110594835 - L3 LINE CR1 -50 1527 987 878 174 192 11 chr9 7267805 7268081 -110594546 + L1ME4a LINE L1 5793 6118 -3 415 237 144 37 chr9 7269448 7269567 -110593060 + MIR SINE MIR 17 122 -140 5165 175 108 125 chr9 7269567 7271348 -110591279 - MER52A LTR ERV1 0 1755 4 415 237 144 37 chr9 7271348 7271433 -110591194 + MIR SINE MIR 122 238 -24 194 247 130 0 chr9 7272258 7272335 -110590292 + L2 LINE L2 3162 3248 -24 795 161 0 0 chr9 7272770 7272894 -110589733 + FLAM_C SINE Alu 1 124 -9 1407 150 80 36 chr9 7273151 7273425 -110589202 + AluJo SINE Alu 1 286 -26 699 269 50 17 chr9 7273887 7274184 -110588443 + L1ME4a LINE L1 5599 5905 -216 1508 142 46 7 chr9 7274187 7274469 -110588158 + L1MB3 LINE L1 5891 6183 0 894 110 7 29 chr9 7274846 7274982 -110587645 - FLAM_C SINE Alu 0 133 1 232 333 39 16 chr9 7275137 7275266 -110587361 - MARNA DNA Mariner -178 408 277 456 244 59 7 chr9 7275429 7275564 -110587063 - LTR67 LTR ERVL -8 549 408 180 0 0 0 chr9 7275684 7275704 -110586923 + (CTG)n Simple_repeat Simple_repeat 1 20 0 37874 84 14 8 chr9 7277101 7283202 -110579425 - L1PA6 LINE L1 -2 6152 13 647 222 7 15 chr9 7284890 7285025 -110577602 - MER119 DNA MER1_type -1 582 449 396 272 76 0 chr9 7285043 7285135 -110577492 - MER119 DNA MER1_type -478 105 7 309 198 35 78 chr9 7286493 7286609 -110576018 + MIR SINE MIR 102 212 -50 240 86 0 0 chr9 7288182 7288217 -110574410 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 30 0 0 chr9 7288397 7288430 -110574197 + AT_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr9 7288885 7288924 -110573703 + AT_rich Low_complexity Low_complexity 1 39 0 501 235 9 17 chr9 7288984 7289099 -110573528 - MER81 DNA DNA 0 114 1 2217 111 0 19 chr9 7289641 7289957 -110572670 + AluSq SINE Alu 1 310 -3 1458 161 96 38 chr9 7290524 7290815 -110571812 + AluJb SINE Alu 1 308 -4 2280 103 7 0 chr9 7291073 7291374 -110571253 - AluSc SINE Alu -6 303 1 1385 114 31 22 chr9 7292561 7292789 -110569838 + MER30 DNA MER1_type 1 230 0 24 0 0 0 chr9 7293570 7293594 -110569033 + AT_rich Low_complexity Low_complexity 1 24 0 200 344 33 0 chr9 7294756 7294846 -110567781 - L2 LINE L2 -6 3266 3174 234 280 122 0 chr9 7297682 7297789 -110564838 - MIR3 SINE MIR -19 189 70 227 176 221 15 chr9 7297844 7297912 -110564715 - MLT1G1 LTR MaLR -36 559 478 279 306 68 27 chr9 7299697 7299844 -110562783 - MIR SINE MIR -13 249 97 1088 167 63 9 chr9 7300014 7300236 -110562391 + L1ME1 LINE L1 5928 6161 -5 249 324 69 6 chr9 7300349 7300522 -110562105 - L2 LINE L2 -1153 2161 1978 1051 284 39 56 chr9 7300663 7301075 -110561552 - L1MDa LINE L1 -6079 461 57 2214 117 10 0 chr9 7301102 7301411 -110561216 - AluSx SINE Alu 0 312 1 2083 184 86 4 chr9 7301812 7302278 -110560349 + MLT1D LTR MaLR 2 505 0 503 196 41 0 chr9 7302467 7302578 -110560049 - L1MB7 LINE L1 0 6174 6055 1533 181 83 0 chr9 7302633 7302909 -110559718 - AluJb SINE Alu -13 299 1 521 180 54 31 chr9 7303550 7303788 -110558839 + MER46C DNA MER2_type 61 338 0 2347 187 20 47 chr9 7303950 7304092 -110558535 + MLT2B2 LTR ERVL 1 145 -370 2728 98 8 0 chr9 7304092 7304451 -110558176 + THE1B LTR MaLR 3 364 0 2347 187 20 47 chr9 7304451 7304801 -110557826 + MLT2B2 LTR ERVL 145 480 -35 248 224 0 0 chr9 7304832 7304890 -110557737 + MLT2B2 LTR ERVL 458 515 0 6422 64 0 3 chr9 7304909 7305691 -110556936 + LTR17 LTR ERV1 1 780 0 312 370 60 10 chr9 7306873 7307073 -110555554 + MIR SINE MIR 21 230 -32 216 0 0 0 chr9 7308737 7308761 -110553866 + (T)n Simple_repeat Simple_repeat 1 24 0 185 283 98 22 chr9 7308831 7308923 -110553704 + L2 LINE L2 3209 3307 -6 595 234 13 19 chr9 7308926 7309080 -110553547 + MIR SINE MIR 88 240 -22 187 220 20 0 chr9 7309111 7309161 -110553466 + L2 LINE L2 3263 3313 0 1606 159 58 18 chr9 7309214 7309491 -110553136 - AluJo SINE Alu -16 296 9 2377 105 48 20 chr9 7309682 7310035 -110552592 - THE1B LTR MaLR -1 363 1 202 292 6 123 chr9 7310907 7310970 -110551657 + MER5B DNA MER1_type 3 72 -106 2237 112 3 0 chr9 7310970 7311273 -110551354 + AluSq SINE Alu 1 304 -9 202 292 6 123 chr9 7311273 7311380 -110551247 + MER5B DNA MER1_type 72 153 -25 306 269 129 65 chr9 7311498 7311684 -110550943 + MIR SINE MIR 20 217 -45 321 292 29 22 chr9 7311929 7312066 -110550561 + HAL1 LINE L1 1 138 -2369 677 228 61 6 chr9 7312095 7312275 -110550352 + HAL1 LINE L1 1562 1751 -756 777 340 54 4 chr9 7312301 7312580 -110550047 + LTR33 LTR ERVL 48 340 -181 1295 239 49 72 chr9 7312600 7313170 -110549457 + HAL1 LINE L1 1836 2392 -115 27 29 0 0 chr9 7314471 7314505 -110548122 + AT_rich Low_complexity Low_complexity 1 34 0 2117 134 0 17 chr9 7314505 7314804 -110547823 - AluSx SINE Alu -16 296 3 268 319 141 16 chr9 7315212 7315397 -110547230 - MIR SINE MIR -8 254 47 681 98 0 0 chr9 7316510 7316622 -110546005 + (TCCA)n Simple_repeat Simple_repeat 3 114 0 1275 84 0 0 chr9 7316636 7316923 -110545704 + (TCCA)n Simple_repeat Simple_repeat 1 287 0 288 354 9 0 chr9 7316925 7317038 -110545589 - L2 LINE L2 -14 3299 3186 406 253 0 0 chr9 7318057 7318156 -110544471 + L1MC/D LINE L1 5706 5804 -2004 2217 282 131 25 chr9 7318260 7319704 -110542923 + L2 LINE L2 1481 3084 -229 382 281 44 0 chr9 7319742 7319856 -110542771 - MER91C DNA MER1_type -17 123 5 1065 52 40 12 chr9 7319897 7320070 -110542557 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 2112 132 7 0 chr9 7320072 7320368 -110542259 - AluSx SINE Alu -14 298 1 323 290 145 0 chr9 7320372 7320503 -110542124 + L2 LINE L2 3164 3313 0 307 303 13 26 chr9 7320525 7320680 -110541947 + HAL1b LINE L1 1189 1341 -7 471 269 140 5 chr9 7320695 7320888 -110541739 + MIR SINE MIR 30 248 -14 213 120 60 0 chr9 7320908 7320958 -110541669 + (TTA)n Simple_repeat Simple_repeat 2 54 0 1793 173 3 3 chr9 7321770 7322054 -110540573 + AluJo SINE Alu 5 288 -24 849 282 50 31 chr9 7324295 7324618 -110538009 + HAL1 LINE L1 11 339 -2168 5085 128 11 7 chr9 7324997 7325742 -110536885 - L1MC1 LINE L1 -1 6332 5585 2081 100 0 4 chr9 7325930 7326201 -110536426 + AluSq SINE Alu 5 274 -39 911 228 46 32 chr9 7326263 7326482 -110536145 - MER58A DNA MER1_type -2 222 1 663 283 79 18 chr9 7326567 7326846 -110535781 - MLT1K LTR MaLR -2 586 291 732 154 30 124 chr9 7326990 7327191 -110535436 + MER5A DNA MER1_type 3 184 -5 266 268 82 10 chr9 7327209 7327306 -110535321 + L2 LINE L2 3121 3224 -48 1597 164 98 14 chr9 7328045 7328331 -110534296 - AluSx SINE Alu -2 310 1 1069 199 92 5 chr9 7328741 7328947 -110533680 + MER58A DNA MER1_type 1 224 0 667 152 0 9 chr9 7329065 7329170 -110533457 - AluJ SINE Alu -19 293 190 895 150 0 0 chr9 7329177 7329310 -110533317 - AluJ SINE Alu -179 133 1 448 199 87 132 chr9 7329317 7329762 -110532865 - L1MC4 LINE L1 -1 8041 7549 271 270 22 31 chr9 7332297 7332435 -110530192 - MLT1J LTR MaLR -339 172 110 267 200 125 12 chr9 7332430 7332510 -110530117 - MLT1L LTR MaLR -524 91 3 * 270 201 97 119 chr9 7333279 7333413 -110529214 - MER5A DNA MER1_type -30 159 29 234 278 40 71 chr9 7333455 7333581 -110529046 - MIR SINE MIR -19 243 122 248 75 0 25 chr9 7333989 7334029 -110528598 + (GA)n Simple_repeat Simple_repeat 2 40 0 601 270 56 19 chr9 7334390 7334603 -110528024 - MIR SINE MIR -26 236 17 1554 147 13 63 chr9 7335641 7335941 -110526686 - AluJo SINE Alu -23 289 5 652 262 143 91 chr9 7336449 7336975 -110525652 + LTR67 LTR ERVL 2 554 -3 680 196 0 0 chr9 7337024 7337126 -110525501 + FLAM_C SINE Alu 17 118 -25 270 0 0 0 chr9 7337130 7337160 -110525467 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2202 116 10 0 chr9 7337487 7337780 -110524847 - AluSx SINE Alu -16 296 1 34329 94 55 10 chr9 7338006 7343879 -110518748 + L1PA6 LINE L1 11 6153 -1 230 360 11 73 chr9 7343902 7344163 -110518464 + L2 LINE L2 2942 3186 -86 474 236 90 36 chr9 7344588 7344784 -110517843 + MIR3 SINE MIR 18 216 -46 250 291 13 0 chr9 7344968 7345047 -110517580 + MLT1L LTR MaLR 1 80 -535 240 111 0 0 chr9 7345286 7345322 -110517305 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 219 369 12 31 chr9 7345322 7345482 -110517145 + L2 LINE L2 2948 3104 -168 413 145 13 0 chr9 7345484 7345560 -110517067 + CT-rich Low_complexity Low_complexity 4 80 0 234 311 0 0 chr9 7346264 7346325 -110516302 - L2 LINE L2 -9 3263 3203 26 0 0 0 chr9 7346332 7346358 -110516269 + AT_rich Low_complexity Low_complexity 1 26 0 856 296 88 21 chr9 7346395 7346868 -110515759 + MLT2F LTR ERVL 1 434 -229 491 237 22 22 chr9 7346886 7347025 -110515602 + MLT2E LTR ERVL 475 613 -15 255 363 4 35 chr9 7347057 7347149 -110515478 + MLT1-int LTR MaLR 292 385 -986 2657 118 6 6 chr9 7347149 7347513 -110515114 - THE1B LTR MaLR 0 364 1 255 363 4 35 chr9 7347513 7347679 -110514948 + MLT1-int LTR MaLR 385 542 -829 24 0 0 0 chr9 7348081 7348105 -110514522 + AT_rich Low_complexity Low_complexity 1 24 0 760 333 68 12 chr9 7348338 7348677 -110513950 + LTR16C LTR ERVL 133 490 -1 205 340 21 0 chr9 7348786 7348880 -110513747 - L2 LINE L2 -305 2967 2872 * 259 333 29 0 chr9 7348871 7348940 -110513687 - MER91A DNA MER1_type -7 189 119 404 310 26 0 chr9 7348986 7349102 -110513525 - MER91A DNA MER1_type -40 156 38 273 263 38 0 chr9 7349504 7349584 -110513043 + MLT1J2 LTR MaLR 67 149 -301 227 196 0 20 chr9 7350256 7350307 -110512320 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 85 0 0 chr9 7350911 7350970 -110511657 + (TG)n Simple_repeat Simple_repeat 1 59 0 265 268 31 70 chr9 7351084 7351292 -110511335 - MIR SINE MIR 0 262 8 755 224 56 28 chr9 7351842 7352021 -110510606 - MIR SINE MIR -66 196 13 1639 177 24 3 chr9 7352100 7352394 -110510233 + AluJb SINE Alu 1 300 -12 204 40 0 0 chr9 7352397 7352422 -110510205 + (CAA)n Simple_repeat Simple_repeat 3 27 0 295 299 120 33 chr9 7353025 7353209 -110509418 - MIR SINE MIR -6 256 57 636 167 0 0 chr9 7353510 7353600 -110509027 - AluJ/FLAM SINE Alu -221 91 2 4640 169 63 3 chr9 7353967 7354854 -110507773 + L1MD1 LINE L1 5292 6231 -11 274 231 0 0 chr9 7354856 7354921 -110507706 + MARNA DNA Mariner 327 391 -195 316 226 0 0 chr9 7355135 7355197 -110507430 - MER21B LTR ERV1 -144 719 658 * 3016 99 39 27 chr9 7355191 7355677 -110506950 - LTR21A LTR ERV1 -13 492 1 1393 188 82 36 chr9 7355679 7355983 -110506644 - MER21B LTR ERV1 -202 661 344 434 194 155 0 chr9 7356045 7356148 -110506479 - MER21B LTR ERV1 -647 216 98 376 127 228 0 chr9 7356173 7356252 -110506375 - FRAM SINE Alu -2 164 68 563 176 0 0 chr9 7356276 7356361 -110506266 - FRAM/FAM SINE Alu -92 84 1 397 210 25 0 chr9 7356380 7356461 -110506166 - MER21B LTR ERV1 -760 103 21 366 309 9 9 chr9 7356624 7356734 -110505893 - MIR SINE MIR -60 148 39 757 271 65 0 chr9 7357473 7357687 -110504940 - MIR SINE MIR -13 249 22 1984 123 3 49 chr9 7357688 7358013 -110504614 - AluJb SINE Alu -2 310 1 265 242 61 53 chr9 7359200 7359332 -110503295 - L2 LINE L2 -23 3290 3158 2446 178 48 85 chr9 7359400 7359939 -110502688 + LTR40a LTR ERVL 1 519 0 306 280 67 16 chr9 7361114 7361307 -110501320 + L1MEd LINE L1 638 840 -5279 1006 196 6 0 chr9 7361365 7361538 -110501089 + L1MDa LINE L1 19 192 -6348 * 2872 181 120 107 chr9 7361536 7361836 -110500791 + L1MDa LINE L1 807 1102 -5438 1725 189 3 7 chr9 7361836 7362137 -110500490 + AluJo SINE Alu 1 300 -12 2872 181 120 107 chr9 7362137 7362852 -110499775 + L1MDa LINE L1 1102 1835 -4705 1077 154 66 0 chr9 7363287 7363469 -110499158 - AluSc SINE Alu -2 307 114 2789 129 35 2 chr9 7363632 7364057 -110498570 + Tigger2 DNA MER2_type 2280 2718 0 207 195 0 24 chr9 7364338 7364364 -110498263 + CT-rich Low_complexity Low_complexity 2 28 -13 2201 108 3 10 chr9 7364364 7364678 -110497949 - AluSx SINE Alu 0 312 1 207 195 0 24 chr9 7364678 7364692 -110497935 + CT-rich Low_complexity Low_complexity 28 41 0 276 261 165 17 chr9 7365003 7365118 -110497509 + MIR3 SINE MIR 13 144 -64 379 299 25 80 chr9 7365175 7365376 -110497251 - MLT1J LTR MaLR -104 407 218 246 65 0 0 chr9 7365405 7365436 -110497191 - MLT1J2 LTR MaLR -356 94 64 257 235 20 0 chr9 7366915 7366966 -110495661 - MLT1K LTR MaLR 0 588 537 2038 141 76 17 chr9 7367746 7368100 -110494527 - THE1C LTR MaLR 0 375 1 242 314 157 0 chr9 7368378 7368499 -110494128 + MIR SINE MIR 11 150 -112 345 229 41 74 chr9 7368776 7368810 -110493817 + MIR SINE MIR 141 175 -87 536 313 44 0 chr9 7368810 7368992 -110493635 + MER91B DNA MER1_type 1 190 0 345 229 41 74 chr9 7368992 7369079 -110493548 + MIR SINE MIR 175 258 -4 256 300 43 21 chr9 7369239 7369379 -110493248 - L1MC4 LINE L1 -15 8027 7885 3362 210 26 41 chr9 7369519 7369573 -110493054 - L1ME2 LINE L1 -10 6088 6035 2286 105 0 0 chr9 7369573 7369868 -110492759 + AluSx SINE Alu 1 295 -17 3362 210 26 41 chr9 7369868 7369937 -110492690 - L1ME2 LINE L1 -63 6035 5966 2232 112 3 3 chr9 7369937 7370249 -110492378 + AluSx SINE Alu 1 312 0 3362 210 26 41 chr9 7370249 7370972 -110491655 - L1ME2 LINE L1 -132 5966 5254 1019 222 48 4 chr9 7370969 7371221 -110491406 - L1MD3 LINE L1 -2 7993 7731 * 1755 145 91 0 chr9 7371230 7371506 -110491121 - AluSx SINE Alu -11 301 1 4419 243 91 52 chr9 7371542 7373520 -110489107 - L1ME2 LINE L1 -830 5250 3207 5894 138 11 18 chr9 7373536 7374435 -110488192 - L1MC1 LINE L1 0 6333 5438 1875 54 0 5 chr9 7374435 7374683 -110487944 - AluY SINE Alu 0 319 73 5894 138 11 18 chr9 7374683 7374737 -110487890 - L1MC1 LINE L1 -895 5438 5385 7050 52 0 72 chr9 7374737 7375919 -110486708 - L1PA5 LINE L1 0 6154 5081 9320 223 42 11 chr9 7375927 7376960 -110485667 - L1MC1 LINE L1 -752 5394 4394 2070 121 0 13 chr9 7376960 7377258 -110485369 - AluSc SINE Alu -15 294 1 9320 223 42 11 chr9 7377258 7378615 -110484012 - L1MC1 LINE L1 -1752 4394 2930 277 229 57 0 chr9 7378664 7378769 -110483858 - L1ME2 LINE L1 -2989 3091 2981 1053 277 88 71 chr9 7378770 7379224 -110483403 + MLT1G LTR MaLR 1 460 -135 408 208 25 67 chr9 7379289 7379409 -110483218 - L1ME2 LINE L1 -5859 211 97 2178 111 0 3 chr9 7379869 7380157 -110482470 - AluSx SINE Alu -15 297 11 288 0 0 0 chr9 7380708 7380740 -110481887 + (TG)n Simple_repeat Simple_repeat 2 33 0 361 277 43 116 chr9 7381293 7381622 -110481005 - L2 LINE L2 -2 3270 2966 1090 181 48 9 chr9 7383074 7383284 -110479343 - L1PB3 LINE L1 -1 6153 5936 402 261 96 102 chr9 7383477 7383811 -110478816 + MLT1K LTR MaLR 10 341 -247 241 219 37 0 chr9 7383924 7384006 -110478621 + C-rich Low_complexity Low_complexity 3 87 0 649 341 60 30 chr9 7384011 7384664 -110477963 - L2 LINE L2 -5 3308 2628 370 278 35 0 chr9 7384764 7384879 -110477748 - MLT1L LTR MaLR -129 486 368 234 211 53 0 chr9 7385737 7385794 -110476833 + MLT1K LTR MaLR 522 581 -7 1801 191 63 26 chr9 7386631 7387013 -110475614 + MSTD LTR MaLR 1 396 0 180 111 0 0 chr9 7387156 7387183 -110475444 + (TCCC)n Simple_repeat Simple_repeat 4 30 0 1754 183 26 7 chr9 7387585 7387891 -110474736 + AluJb SINE Alu 1 312 0 300 275 42 25 chr9 7387925 7388045 -110474582 + MIR SINE MIR 60 181 -81 217 296 26 61 chr9 7388117 7388232 -110474395 - L3 LINE CR1 -206 1371 1261 1354 177 9 79 chr9 7388238 7388554 -110474073 - L1MB5 LINE L1 0 6174 5881 271 208 218 20 chr9 7389816 7389917 -110472710 - MLT1J LTR MaLR -57 454 334 809 247 147 36 chr9 7389998 7390386 -110472241 - MLT1J LTR MaLR -74 437 7 218 255 59 0 chr9 7390961 7391012 -110471615 + MIR3 SINE MIR 103 156 -52 293 240 165 8 chr9 7393074 7393195 -110469432 + L2 LINE L2 2919 3058 -214 321 125 0 0 chr9 7393498 7393554 -110469073 + (GA)n Simple_repeat Simple_repeat 1 56 0 4671 110 36 7 chr9 7394624 7395342 -110467285 - L1PA16 LINE L1 -11 6155 5417 297 68 0 0 chr9 7395414 7395458 -110467169 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 233 322 144 8 chr9 7396675 7396793 -110465834 + L2 LINE L2 3138 3271 -1 223 319 55 22 chr9 7397719 7397810 -110464817 - MIR SINE MIR -70 192 99 373 289 72 41 chr9 7398768 7398919 -110463708 - MLT1L LTR MaLR 0 615 470 2096 145 0 6 chr9 7398919 7399230 -110463397 - AluSx SINE Alu -3 309 1 373 289 72 41 chr9 7399230 7399470 -110463157 - MLT1L LTR MaLR -145 470 110 37 0 0 0 chr9 7399492 7399529 -110463098 + AT_rich Low_complexity Low_complexity 1 37 0 39594 83 6 7 chr9 7399529 7405685 -110456942 - L1PA6 LINE L1 0 6154 5 603 77 0 0 chr9 7406808 7406886 -110455741 - MADE1 DNA Mariner 0 80 3 734 235 15 67 chr9 7407789 7408057 -110454570 - L1MC4a LINE L1 -1878 5930 5677 204 125 0 0 chr9 7408070 7408102 -110454525 + (GA)n Simple_repeat Simple_repeat 1 32 0 207 293 61 0 chr9 7408144 7408226 -110454401 + L3b LINE CR1 1251 1337 -246 680 172 19 51 chr9 7410670 7410827 -110451800 - MIR SINE MIR -10 252 101 195 42 0 0 chr9 7411184 7411208 -110451419 + (GA)n Simple_repeat Simple_repeat 2 25 0 1056 295 157 5 chr9 7411711 7412152 -110450475 - MLT1L LTR MaLR -22 593 86 507 275 8 0 chr9 7412362 7412493 -110450134 + L1MC4a LINE L1 5775 5906 -1902 2502 59 0 31 chr9 7412630 7412951 -110449676 + AluY SINE Alu 1 311 0 383 285 145 5 chr9 7413173 7413366 -110449261 + L1MC4a LINE L1 6531 6750 -1058 255 317 0 12 chr9 7413467 7413549 -110449078 - MIR SINE MIR -179 83 3 428 204 41 20 chr9 7413726 7413824 -110448803 - MIR3 SINE MIR -15 193 94 387 316 8 0 chr9 7414796 7414929 -110447698 + MIR SINE MIR 58 191 -71 1724 99 4 21 chr9 7414983 7415216 -110447411 - AluSp SINE Alu -11 302 74 200 132 0 26 chr9 7416125 7416163 -110446464 - MIR SINE MIR -109 153 117 511 250 8 0 chr9 7417039 7417171 -110445456 + L1MB7 LINE L1 6040 6172 -12 2521 76 0 0 chr9 7417925 7418229 -110444398 + AluY SINE Alu 1 304 -7 670 167 67 40 chr9 7418646 7418796 -110443831 + MIR SINE MIR 109 262 0 703 263 123 4 chr9 7419617 7419845 -110442782 - MIR SINE MIR 0 262 8 185 323 56 71 chr9 7420107 7420305 -110442322 - MIR SINE MIR -44 218 24 405 0 0 0 chr9 7421295 7421340 -110441287 + (CA)n Simple_repeat Simple_repeat 2 46 0 390 213 155 32 chr9 7422793 7422948 -110439679 - MIR3 SINE MIR -26 182 9 479 227 123 19 chr9 7423391 7423545 -110439082 - MIR SINE MIR -91 171 2 540 217 217 11 chr9 7424734 7425047 -110437580 + MLT1J LTR MaLR 82 488 -23 185 139 0 28 chr9 7425438 7425474 -110437153 - MIR SINE MIR -153 55 21 720 215 70 0 chr9 7426283 7426441 -110436186 - MER45A DNA AcHobo -1 177 9 3185 154 11 71 chr9 7426515 7426652 -110435975 - MER6A DNA MER2_type -260 605 461 1805 143 68 4 chr9 7426652 7426932 -110435695 + AluJo SINE Alu 1 298 -14 3185 154 11 71 chr9 7426932 7427438 -110435189 - MER6A DNA MER2_type -404 461 1 476 160 0 0 chr9 7427442 7427517 -110435110 + MSTD LTR MaLR 1 75 -321 7236 221 82 19 chr9 7477517 7477785 -110384842 - L1M2 LINE L1 -4523 2686 2436 2083 124 3 0 chr9 7477785 7478096 -110384531 - AluSp SINE Alu 0 312 1 7236 221 82 19 chr9 7478096 7480296 -110382331 - L1M2 LINE L1 -4773 2436 1 199 283 67 0 chr9 7480453 7480513 -110382114 + L2 LINE L2 2191 2254 -1060 740 304 35 4 chr9 7480788 7481015 -110381612 + MIR SINE MIR 25 258 -4 304 286 8 40 chr9 7481451 7481577 -110381050 + GA-rich Low_complexity Low_complexity 3 124 0 377 247 62 84 chr9 7482322 7482500 -110380127 + HAL1 LINE L1 22 195 -2312 287 330 42 62 chr9 7482897 7483203 -110379424 + HAL1 LINE L1 706 1005 -1502 265 342 17 17 chr9 7484148 7484268 -110378359 + MIR SINE MIR 23 142 -120 2866 221 100 12 chr9 7486210 7486988 -110375639 - L1ME1 LINE L1 -3 6163 5317 241 235 15 15 chr9 7487751 7487819 -110374808 + MLT1K LTR MaLR 179 246 -342 2064 160 0 0 chr9 7488156 7488462 -110374165 + AluJo SINE Alu 1 306 -6 232 333 8 79 chr9 7488680 7488806 -110373821 - L3 LINE CR1 -3 1574 1458 389 355 33 16 chr9 7489852 7490094 -110372533 - MIR SINE MIR -14 248 3 404 258 116 37 chr9 7491212 7491402 -110371225 + MIR SINE MIR 56 260 -2 2111 221 61 17 chr9 7492296 7492770 -110369857 + MLT1F LTR MaLR 1 495 -47 2060 221 31 48 chr9 7492771 7493292 -110369335 - LTR40a LTR ERVL 0 519 8 262 235 0 0 chr9 7493298 7493349 -110369278 + MLT1F LTR MaLR 492 542 0 351 276 95 0 chr9 7494368 7494484 -110368143 + MIR SINE MIR 124 250 -12 555 163 0 0 chr9 7494489 7494581 -110368046 - AluJ/FRAM SINE Alu 0 312 221 1521 263 50 19 chr9 7495234 7495710 -110366917 + LTR16C LTR ERVL 1 491 0 345 329 96 0 chr9 7495856 7496002 -110366625 - MIR SINE MIR -66 196 37 1016 251 140 40 chr9 7496093 7496664 -110365963 + L2 LINE L2 2698 3308 -5 329 243 162 0 chr9 7497230 7497366 -110365261 - L1ME4a LINE L1 -3 6118 5961 1046 110 6 0 chr9 7497447 7497611 -110365016 + (TTTCC)n Simple_repeat Simple_repeat 2 166 0 1708 169 22 0 chr9 7497611 7497884 -110364743 - AluJb SINE Alu -33 279 1 272 275 11 0 chr9 7498026 7498117 -110364510 - HsTC2 DNA Tc2 -1007 891 800 482 134 0 0 chr9 7498153 7498220 -110364407 + Tigger2 DNA MER2_type 1 67 -2651 * 570 143 0 10 chr9 7498206 7498304 -110364323 + Tigger2 DNA MER2_type 2267 2363 -355 226 103 0 0 chr9 7498301 7498330 -110364297 + Tigger2 DNA MER2_type 2690 2718 0 * 648 260 87 5 chr9 7498334 7498542 -110364085 - HsTC2 DNA Tc2 -1138 760 536 336 276 33 59 chr9 7498544 7498696 -110363931 - HsTC2 DNA Tc2 -1750 148 1 21 0 0 0 chr9 7498845 7498866 -110363761 + AT_rich Low_complexity Low_complexity 1 21 0 510 271 25 30 chr9 7499613 7499748 -110362879 - L1ME4a LINE L1 -162 5959 5824 2153 132 47 44 chr9 7499748 7500111 -110362516 + THE1B LTR MaLR 1 364 0 510 271 25 30 chr9 7500111 7500174 -110362453 - L1ME4a LINE L1 -297 5824 5762 2451 68 0 0 chr9 7500663 7500957 -110361670 + AluY SINE Alu 1 294 -17 381 197 13 0 chr9 7501766 7501842 -110360785 + MER58 DNA MER1_type 2343 2419 -1 234 258 33 67 chr9 7502650 7502770 -110359857 - L1MC4 LINE L1 -116 7926 7811 295 271 21 21 chr9 7502899 7502995 -110359632 - L1MC4 LINE L1 -368 7674 7579 2531 230 17 35 chr9 7503013 7503648 -110358979 - L1ME1 LINE L1 -4 6162 5539 253 220 68 0 chr9 7503691 7503750 -110358877 - L1ME LINE L1 -6002 68 6 234 307 53 0 chr9 7503823 7503898 -110358729 - MIR3 SINE MIR -14 194 116 346 236 42 0 chr9 7503921 7503993 -110358634 - L2 LINE L2 -4 3268 3194 294 254 0 0 chr9 7505392 7505459 -110357168 + MIR3 SINE MIR 137 203 -5 27 49 0 0 chr9 7506148 7506189 -110356438 + AT_rich Low_complexity Low_complexity 1 41 0 632 255 21 32 chr9 7506378 7506566 -110356061 + MIR SINE MIR 2 187 -75 23 33 0 0 chr9 7508900 7508930 -110353697 + AT_rich Low_complexity Low_complexity 1 30 0 431 193 0 23 chr9 7509875 7509963 -110352664 + MIR SINE MIR 174 259 -3 21 57 0 0 chr9 7510135 7510170 -110352457 + AT_rich Low_complexity Low_complexity 1 35 0 182 306 26 119 chr9 7510448 7510641 -110351986 + MIR SINE MIR 18 192 -70 329 314 0 8 chr9 7511648 7511769 -110350858 - LTR67 LTR ERVL 0 557 438 2483 132 16 65 chr9 7511821 7512267 -110350360 + Tigger2a DNA MER2_type 11 434 0 299 243 40 0 chr9 7512319 7512393 -110350234 - LTR67 LTR ERVL -478 79 3 2625 227 116 136 chr9 7512857 7513693 -110348934 - HAL1 LINE L1 -93 2414 1563 764 160 82 82 chr9 7513693 7513716 -110348911 + MER58C DNA MER1_type 3 25 -2395 2669 167 22 31 chr9 7513716 7514206 -110348421 - MER66B LTR ERV1 0 486 1 764 160 82 82 chr9 7514206 7514273 -110348354 + MER58C DNA MER1_type 25 91 -2329 483 18 0 0 chr9 7514273 7514329 -110348298 + (CCAA)n Simple_repeat Simple_repeat 4 59 0 764 160 82 82 chr9 7514329 7514443 -110348184 + MER58C DNA MER1_type 90 208 -7 2625 227 116 136 chr9 7514443 7514895 -110347732 - HAL1 LINE L1 -944 1563 1103 189 0 0 0 chr9 7514895 7514916 -110347711 + (TA)n Simple_repeat Simple_repeat 1 21 0 2625 227 116 136 chr9 7514916 7515345 -110347282 - HAL1 LINE L1 -1404 1103 530 1210 182 9 18 chr9 7515359 7515579 -110347048 - AluJo SINE Alu -22 290 73 241 215 169 0 chr9 7515582 7515647 -110346980 - HAL1 LINE L1 -1966 541 466 1058 137 12 6 chr9 7515648 7515816 -110346811 - FRAM SINE Alu -7 169 1 908 243 62 110 chr9 7515816 7516298 -110346329 - HAL1 LINE L1 -2033 474 16 279 259 16 77 chr9 7516638 7516793 -110345834 - L1ME LINE L1 -516 5605 5465 1317 282 44 12 chr9 7517512 7517994 -110344633 - Tigger8 DNA MER2_type -13 653 157 1725 171 0 51 chr9 7518616 7518932 -110343695 + AluJb SINE Alu 1 300 -12 1124 151 27 28 chr9 7521845 7522063 -110340564 - L1PB1 LINE L1 -13 6153 5945 1433 122 10 0 chr9 7523081 7523286 -110339341 - L1PB1 LINE L1 0 6151 5945 258 308 65 19 chr9 7523306 7523413 -110339214 + MIR SINE MIR 61 172 -90 439 259 109 23 chr9 7523662 7523836 -110338791 - LTR67 LTR ERVL -13 544 356 305 325 19 57 chr9 7523987 7524144 -110338483 - LTR67 LTR ERVL -355 202 52 210 277 96 0 chr9 7524402 7524496 -110338131 - MIR SINE MIR -80 182 80 475 316 124 10 chr9 7524548 7524741 -110337886 + MIR SINE MIR 7 221 -41 232 200 12 129 chr9 7526311 7526365 -110336262 + MIR SINE MIR 105 147 -115 2262 77 7 0 chr9 7526365 7526651 -110335976 - AluSp SINE Alu -25 288 1 232 200 12 129 chr9 7526651 7526681 -110335946 + MIR SINE MIR 147 179 -83 2272 136 33 25 chr9 7526760 7527121 -110335506 + THE1B LTR MaLR 1 364 0 2522 62 0 7 chr9 7530247 7530556 -110332071 + AluY SINE Alu 1 307 -4 235 214 0 0 chr9 7531148 7531190 -110331437 + L2 LINE L2 3228 3269 -3 1073 90 8 0 chr9 7531798 7531932 -110330695 + AluSq/x SINE Alu 1 135 -178 1827 161 3 3 chr9 7531933 7532224 -110330403 + AluSx SINE Alu 1 291 -21 2683 162 54 35 chr9 7532376 7532951 -110329676 + L1MA7 LINE L1 5607 6192 -99 972 169 19 5 chr9 7533073 7533280 -110329347 + L1MA7 LINE L1 6080 6289 -2 233 342 149 0 chr9 7534131 7534245 -110328382 + MIR3 SINE MIR 15 145 -63 242 283 54 0 chr9 7534819 7534911 -110327716 + MIR SINE MIR 96 192 -70 214 216 27 0 chr9 7535290 7535364 -110327263 + GA-rich Low_complexity Low_complexity 2 77 0 250 239 30 0 chr9 7536650 7536717 -110325910 + (TA)n Simple_repeat Simple_repeat 2 70 0 2691 26 7 0 chr9 7536782 7537090 -110325537 + AluY SINE Alu 1 310 -1 1983 161 70 6 chr9 7538158 7538500 -110324127 + MLT1A1 LTR MaLR 1 364 -1 728 218 18 41 chr9 7538990 7539210 -110323417 + L1MA7 LINE L1 6076 6290 -1 506 296 69 57 chr9 7540585 7540832 -110321795 - MIR SINE MIR -12 250 1 189 205 0 0 chr9 7541572 7541611 -110321016 - MIR SINE MIR -66 196 158 2069 138 3 0 chr9 7542304 7542600 -110320027 + AluSx SINE Alu 3 299 -13 370 227 40 80 chr9 7543348 7543498 -110319129 - L2 LINE L2 -10 3303 3160 839 284 29 0 chr9 7543561 7543765 -110318862 - MER63A DNA MER1_type 0 210 1 25 0 0 0 chr9 7543904 7543929 -110318698 + AT_rich Low_complexity Low_complexity 1 25 0 375 312 55 0 chr9 7544229 7544338 -110318289 - MIR SINE MIR -120 142 28 2800 174 49 8 chr9 7544828 7545356 -110317271 + MER44D DNA MER2_type 1 605 0 317 276 43 17 chr9 7545731 7545847 -110316780 - LTR67 LTR ERVL -10 547 429 1037 186 11 6 chr9 7546885 7547062 -110315565 + MER5B DNA MER1_type 1 178 0 234 0 0 0 chr9 7547159 7547185 -110315442 + (TTA)n Simple_repeat Simple_repeat 2 27 0 471 296 123 0 chr9 7547240 7547419 -110315208 + MIR SINE MIR 49 249 -13 225 266 28 73 chr9 7547486 7547595 -110315032 - MIR SINE MIR -78 184 81 467 230 164 24 chr9 7547892 7548057 -110314570 - MIR3 SINE MIR 0 208 21 258 218 64 0 chr9 7548236 7548314 -110314313 - MLT1H1 LTR MaLR -1 554 507 612 292 82 26 chr9 7548352 7548585 -110314042 - MLT1H1 LTR MaLR -309 246 1 477 292 52 7 chr9 7549372 7549526 -110313101 + MIR SINE MIR 95 255 -7 210 171 0 0 chr9 7549528 7549569 -110313058 + (CAAT)n Simple_repeat Simple_repeat 2 42 0 410 261 113 20 chr9 7550286 7550481 -110312146 + MIR SINE MIR 2 214 -48 476 338 87 14 chr9 7550584 7550803 -110311824 - MIR SINE MIR -8 254 20 198 329 75 80 chr9 7551243 7551456 -110311171 - MIR SINE MIR 0 262 51 234 302 0 0 chr9 7551540 7551603 -110311024 + MER5A DNA MER1_type 51 113 -76 476 281 98 58 chr9 7553545 7553769 -110308858 + MIR SINE MIR 4 236 -26 519 328 6 17 chr9 7555868 7556048 -110306579 - MIR3 SINE MIR -11 197 20 827 214 291 40 chr9 7556596 7556832 -110305795 + Charlie2a DNA MER1_type 2 177 -2685 2024 118 27 3 chr9 7556832 7557128 -110305499 - AluSx SINE Alu -9 303 1 827 214 291 40 chr9 7557128 7557269 -110305358 + Charlie2a DNA MER1_type 177 474 -2388 978 206 25 25 chr9 7557270 7557547 -110305080 + Charlie2a DNA MER1_type 736 1012 -1850 238 224 0 26 chr9 7557602 7557678 -110304949 - L1MC5 LINE L1 -35 7926 7853 2262 98 3 0 chr9 7557699 7557986 -110304641 - AluSp SINE Alu -25 288 1 281 228 35 0 chr9 7558651 7558765 -110303862 + (TA)n Simple_repeat Simple_repeat 2 119 0 283 316 58 26 chr9 7558801 7558997 -110303630 + MIR SINE MIR 58 259 -3 555 254 89 46 chr9 7559395 7559821 -110302806 - MLT1L LTR MaLR -1 614 126 211 254 104 0 chr9 7561509 7561576 -110301051 - MIR SINE MIR -64 198 125 195 289 19 0 chr9 7561587 7561639 -110300988 + L2 LINE L2 3219 3271 -1 2098 171 31 6 chr9 7562169 7562525 -110300102 - MLT1A1 LTR MaLR 0 365 1 357 318 101 16 chr9 7564059 7564248 -110298379 - MIR SINE MIR -6 256 52 2029 136 172 5 chr9 7564407 7564774 -110297853 - MSTA LTR MaLR 0 428 1 1005 180 52 134 chr9 7564887 7565422 -110297205 + MER4A LTR ERV1 1 432 -165 632 209 19 87 chr9 7565407 7565613 -110297014 + MER4C LTR ERV1 273 464 -1 * 201 39 0 0 chr9 7565952 7565978 -110296649 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr9 7566249 7566270 -110296357 + (CA)n Simple_repeat Simple_repeat 1 21 0 216 111 0 0 chr9 7567684 7567720 -110294907 + (CA)n Simple_repeat Simple_repeat 1 36 0 1323 261 68 38 chr9 7568083 7568554 -110294073 + LTR16C LTR ERVL 1 485 -6 203 316 52 44 chr9 7568766 7568823 -110293804 + L2 LINE L2 3171 3226 -87 2622 52 7 0 chr9 7568823 7569132 -110293495 - AluY SINE Alu 0 311 1 203 316 52 44 chr9 7569132 7569210 -110293417 + L2 LINE L2 3226 3307 -6 1629 169 96 37 chr9 7570097 7570451 -110292176 + THE1C LTR MaLR 1 375 0 1030 273 101 21 chr9 7571825 7572202 -110290425 - MLT1I LTR MaLR -2 407 1 2559 65 0 0 chr9 7572244 7572553 -110290074 + AluY SINE Alu 3 311 0 382 294 48 14 chr9 7572687 7572863 -110289764 + MIR SINE MIR 42 221 -41 261 244 142 47 chr9 7573460 7573587 -110289040 + Charlie8 DNA MER1_type 87 225 -2192 259 306 102 23 chr9 7573994 7574152 -110288475 - MIR SINE MIR -63 145 1 198 333 0 26 chr9 7574411 7574489 -110288138 + L2 LINE L2 3197 3272 0 359 297 40 14 chr9 7575325 7575601 -110287026 - L1MDb LINE L1 -5023 1921 1639 7806 144 17 6 chr9 7575626 7577833 -110284794 + L1PA14 LINE L1 3923 6149 -12 24 0 0 0 chr9 7577835 7577859 -110284768 + AT_rich Low_complexity Low_complexity 1 24 0 260 219 24 158 chr9 7577935 7578181 -110284446 - L1MDb LINE L1 -5082 1341 1129 658 314 47 38 chr9 7578511 7578963 -110283664 - L1MDb LINE L1 -5944 479 24 248 311 8 0 chr9 7578970 7579089 -110283538 - L1ME LINE L1 -313 5808 5689 373 175 6 108 chr9 7579160 7579317 -110283310 + L1ME3A LINE L1 6006 6148 -22 24 0 0 0 chr9 7579412 7579436 -110283191 + AT_rich Low_complexity Low_complexity 1 24 0 377 331 44 7 chr9 7580692 7580828 -110281799 - MIR3 SINE MIR -23 185 45 1316 192 55 73 chr9 7580892 7581273 -110281354 - MLT1A2 LTR MaLR 0 374 1 5364 129 40 2 chr9 7582058 7583590 -110279037 + L1PA15 LINE L1 4594 6159 -6 2534 74 0 0 chr9 7584030 7584341 -110278286 + AluY SINE Alu 1 311 0 4442 215 115 7 chr9 7584511 7585225 -110277402 - L1PA16 LINE L1 -9 6472 5837 2152 104 27 7 chr9 7585225 7585524 -110277103 - AluSx SINE Alu -7 305 1 4442 215 115 7 chr9 7585524 7586438 -110276189 - L1PA16 LINE L1 -644 5837 4616 * 10440 153 20 20 chr9 7586426 7587753 -110274874 - L1MA3 LINE L1 -2 7722 6397 2518 48 0 10 chr9 7587753 7588065 -110274562 - AluY SINE Alu 0 311 3 10440 153 20 20 chr9 7588065 7589930 -110272697 - L1MA3 LINE L1 -1327 6397 4527 696 129 0 0 chr9 7589946 7590062 -110272565 - L1PA16 LINE L1 -1829 4632 4517 * 4132 129 2 8 chr9 7590060 7590702 -110271925 - L1PA16 LINE L1 -4757 1118 481 1697 167 69 3 chr9 7590706 7591023 -110271604 - L1PA16 LINE L1 -5536 339 2 18627 160 32 24 chr9 7591023 7594645 -110267982 - L1MA3 LINE L1 -3898 3667 16 3039 195 47 1 chr9 7594651 7595329 -110267298 - L1 LINE L1 -1817 4329 3621 11350 191 31 19 chr9 7595329 7598502 -110264125 - L1PA15-16 LINE L1 -3368 3481 716 2163 161 97 11 chr9 7598516 7598970 -110263657 - LTR49 LTR ERV1 -102 493 1 2895 77 41 10 chr9 7599295 7599712 -110262915 - L1PA11 LINE L1 -2 6172 5743 324 261 109 0 chr9 7600262 7600354 -110262273 + MIR SINE MIR 156 257 -5 2773 193 56 59 chr9 7600851 7601580 -110261047 - LTR8A LTR ERV1 0 727 1 345 262 10 48 chr9 7603048 7603151 -110259476 + MIR SINE MIR 9 107 -155 1122 316 118 29 chr9 7603803 7604513 -110258114 + HERVL LTR ERVL 2937 3725 -1929 2809 7 0 0 chr9 7604513 7604817 -110257810 + AluYb8 SINE Alu 1 304 -14 1122 316 118 29 chr9 7604817 7604896 -110257731 + HERVL LTR ERVL 3725 3796 -1858 1233 331 43 50 chr9 7604978 7605971 -110256656 + HERVL LTR ERVL 4050 5035 -729 878 228 34 153 chr9 7606404 7606754 -110255873 + LTR16C LTR ERVL 71 350 -141 2545 117 6 80 chr9 7606754 7607243 -110255384 - MLT2A2 LTR ERVL 0 453 1 878 228 34 153 chr9 7607243 7607370 -110255257 + LTR16C LTR ERVL 350 491 0 621 240 34 43 chr9 7607529 7607737 -110254890 - MER58C DNA MER1_type 0 215 10 2562 46 3 0 chr9 7609387 7609694 -110252933 + AluY SINE Alu 1 308 -3 180 0 0 0 chr9 7609694 7609714 -110252913 + (TA)n Simple_repeat Simple_repeat 2 21 0 336 355 51 0 chr9 7609752 7609890 -110252737 + L2 LINE L2 2917 3061 -211 1245 216 42 45 chr9 7609890 7610312 -110252315 - MER66A LTR ERV1 0 525 165 389 295 85 123 chr9 7610532 7610874 -110251753 + MER102b DNA MER1_type 13 341 0 2240 110 0 0 chr9 7611058 7611348 -110251279 - AluSx SINE Alu -22 290 1 218 246 18 18 chr9 7611483 7611540 -110251087 + L2 LINE L2 3179 3235 -78 240 35 0 0 chr9 7611587 7611616 -110251011 + (TA)n Simple_repeat Simple_repeat 2 30 0 228 35 0 0 chr9 7611615 7611644 -110250983 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 1166 148 0 48 chr9 7611650 7611879 -110250748 - L1PA16 LINE L1 -9 6157 5940 827 211 54 66 chr9 7612289 7612531 -110250096 + MER8 DNA MER2_type 1 239 0 331 370 126 38 chr9 7613009 7613406 -110249221 - L2 LINE L2 0 3272 2841 309 164 64 38 chr9 7613787 7613896 -110248731 + MER45C DNA AcHobo 82 195 -758 1274 281 76 14 chr9 7614014 7614513 -110248114 + MER45C DNA AcHobo 424 953 0 259 316 0 0 chr9 7614748 7614824 -110247803 + GA-rich Low_complexity Low_complexity 2 77 0 2710 128 7 2 chr9 7615887 7616315 -110246312 - L1PA16 LINE L1 -9 6157 5728 415 297 89 50 chr9 7616850 7617052 -110245575 - MIR SINE MIR -19 243 34 2041 152 0 0 chr9 7617465 7617761 -110244866 + AluSx SINE Alu 3 298 -14 398 255 66 76 chr9 7618705 7618891 -110243736 - MLT1J2 LTR MaLR -6 440 254 348 302 52 0 chr9 7619220 7619336 -110243291 + MIR SINE MIR 141 262 0 28 48 0 0 chr9 7619417 7619459 -110243168 + AT_rich Low_complexity Low_complexity 1 42 0 978 219 25 5 chr9 7619619 7619820 -110242807 - MER58A DNA MER1_type 0 224 20 348 283 87 36 chr9 7619896 7620034 -110242593 - MIR SINE MIR -112 150 6 509 223 0 6 chr9 7622360 7622517 -110240110 + (TA)n Simple_repeat Simple_repeat 1 156 0 259 143 0 0 chr9 7622517 7622559 -110240068 + (TG)n Simple_repeat Simple_repeat 2 43 0 393 248 46 0 chr9 7622623 7622732 -110239895 - MER94 DNA DNA -20 114 1 823 277 137 47 chr9 7623782 7624823 -110237804 + L1MEd LINE L1 599 1831 -745 22 35 0 0 chr9 7625221 7625250 -110237377 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr9 7625402 7625437 -110237190 + AT_rich Low_complexity Low_complexity 1 35 0 306 344 62 10 chr9 7625539 7625734 -110236893 + L1MEd LINE L1 2033 2237 -4159 513 268 38 28 chr9 7626463 7626676 -110235951 + MLT1J LTR MaLR 293 507 -4 434 296 25 49 chr9 7626770 7626932 -110235695 - MIR SINE MIR -73 189 32 892 219 12 0 chr9 7627478 7627647 -110234980 - MER5A DNA MER1_type -2 187 17 199 288 0 34 chr9 7627717 7627776 -110234851 - MIR SINE MIR -90 118 62 189 87 43 22 chr9 7627900 7627946 -110234681 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 1366 212 98 0 chr9 7628329 7628636 -110233991 - MER58B DNA MER1_type 0 341 5 531 270 145 78 chr9 7628768 7629168 -110233459 + L1ME LINE L1 5369 5795 -326 189 250 62 16 chr9 7630254 7630318 -110232309 - MIR3 SINE MIR 0 208 142 205 195 0 172 chr9 7630504 7630591 -110232036 - MIR3 SINE MIR -22 186 115 413 321 85 66 chr9 7632411 7632716 -110229911 - L2 LINE L2 -4 3268 2958 3099 96 69 5 chr9 7633824 7634261 -110228366 - MER4C LTR ERV1 0 465 1 199 303 111 0 chr9 7634359 7634458 -110228169 - MIR SINE MIR -78 184 75 268 306 20 61 chr9 7635961 7636108 -110226519 - L2 LINE L2 0 3313 3173 613 155 108 7 chr9 7637007 7637155 -110225472 + MER53 DNA DNA 1 163 -26 246 62 0 0 chr9 7637165 7637197 -110225430 + (TG)n Simple_repeat Simple_repeat 1 32 0 1590 202 3 3 chr9 7637208 7637490 -110225137 - AluJb SINE Alu -30 282 1 231 232 116 11 chr9 7637868 7637963 -110224664 + MIR SINE MIR 81 185 -77 290 240 76 58 chr9 7638373 7638508 -110224119 - LTR26 LTR ERV1 0 691 467 1048 226 9 141 chr9 7638517 7638937 -110223690 - LTR8A LTR ERV1 -328 399 35 1169 116 0 6 chr9 7639628 7639792 -110222835 + AluSg/x SINE Alu 129 291 -21 1039 192 34 14 chr9 7640366 7640574 -110222053 - MER20 DNA MER1_type -7 212 1 397 299 32 32 chr9 7642468 7642625 -110220002 - MIR SINE MIR -86 176 20 349 316 54 6 chr9 7643250 7643418 -110219209 + MIR SINE MIR 35 210 -52 272 385 68 43 chr9 7643450 7643772 -110218855 - L2 LINE L2 -8 3264 2935 515 283 64 27 chr9 7645293 7645480 -110217147 + MIR SINE MIR 20 213 -49 321 244 209 0 chr9 7645819 7645934 -110216693 + MIR SINE MIR 60 198 -64 721 277 67 9 chr9 7645953 7646177 -110216450 - MIR SINE MIR -6 256 20 5790 117 13 3 chr9 7646177 7647030 -110215597 + L1P LINE L1 3514 4374 -1772 307 39 77 0 chr9 7697049 7697101 -110165526 - L1P1 LINE L1 -710 5445 5390 6180 53 1 1 chr9 7697101 7697917 -110164710 + L1P LINE L1 3469 4284 -1862 271 103 0 0 chr9 7697935 7697974 -110164653 - MLT2C2 LTR ERVL -48 416 378 216 0 0 0 chr9 7697975 7697999 -110164628 + (CA)n Simple_repeat Simple_repeat 1 24 0 280 135 19 0 chr9 7698005 7698057 -110164570 + MLT2B1 LTR ERVL 468 520 0 231 204 0 0 chr9 7699137 7699191 -110163436 + (CA)n Simple_repeat Simple_repeat 2 55 0 1705 189 78 44 chr9 7699531 7699982 -110162645 + MER31B LTR ERV1 1 466 0 369 280 0 0 chr9 7700655 7700748 -110161879 - MER96 DNA MER1_type? 0 175 83 708 294 74 9 chr9 7701462 7701693 -110160934 - MIR SINE MIR -11 251 6 828 246 33 48 chr9 7701874 7702249 -110160378 - L1MD3 LINE L1 0 8042 7687 226 262 0 19 chr9 7702272 7702375 -110160252 + CT-rich Low_complexity Low_complexity 2 102 0 1824 149 58 22 chr9 7702423 7702785 -110159842 + THE1C LTR MaLR 1 375 0 416 255 21 27 chr9 7704235 7704366 -110158261 + MIR SINE MIR 2 134 -74 276 77 0 0 chr9 7705143 7705182 -110157445 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 349 211 0 chr9 7705246 7705464 -110157163 + L2 LINE L2 2641 2904 -410 443 291 11 39 chr9 7705996 7706175 -110156452 + L2 LINE L2 3121 3294 -19 28 29 0 0 chr9 7707091 7707126 -110155501 + AT_rich Low_complexity Low_complexity 1 35 0 907 142 15 0 chr9 7707280 7707414 -110155213 - AluJo SINE Alu -176 136 1 258 250 12 12 chr9 7709151 7709231 -110153396 + MER112 DNA MER1_type 179 258 -2 14877 94 10 10 chr9 7710791 7713807 -110148820 - L1PA8 LINE L1 0 6172 3159 313 288 142 59 chr9 7714229 7714448 -110148179 - L2 LINE L2 0 3313 3077 360 341 49 9 chr9 7714655 7714878 -110147749 - L2 LINE L2 -799 2515 2284 757 175 6 79 chr9 7714894 7715071 -110147556 - MER58A DNA MER1_type -29 195 32 23 33 0 0 chr9 7715319 7715349 -110147278 + AT_rich Low_complexity Low_complexity 1 30 0 198 336 18 62 chr9 7716037 7716150 -110146477 - MIR SINE MIR -59 149 42 216 302 43 86 chr9 7716487 7716603 -110146024 - L2 LINE L2 -15 3257 3147 255 313 15 61 chr9 7716729 7716860 -110145767 + L2 LINE L2 3183 3307 -6 1871 222 49 22 chr9 7717196 7717686 -110144941 + MER87 LTR ERV1 33 535 -6 1404 225 30 35 chr9 7717974 7718343 -110144284 + MLT1A2 LTR MaLR 6 372 -2 374 236 0 22 chr9 7718328 7718417 -110144210 + MER21B LTR ERV1 1 87 -776 * 238 125 62 21 chr9 7718473 7718521 -110144106 + MER21B LTR ERV1 98 147 -716 2481 161 36 78 chr9 7718741 7719295 -110143332 - LTR26B LTR ERV1 0 531 1 2272 86 0 0 chr9 7719343 7719622 -110143005 - AluY SINE Alu -32 279 1 286 284 84 63 chr9 7719851 7720041 -110142586 + MER117 DNA MER1_type 4 197 0 207 111 0 28 chr9 7720066 7720102 -110142525 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 411 285 43 38 chr9 7720679 7720865 -110141762 - MIR3 SINE MIR -3 205 19 1156 196 30 121 chr9 7721041 7721470 -110141157 - MLT2D LTR ERVL -24 390 1 2106 91 66 0 chr9 7722606 7722893 -110139734 - AluY SINE Alu -5 306 1 21 0 0 0 chr9 7723104 7723125 -110139502 + AT_rich Low_complexity Low_complexity 1 21 0 2871 100 83 21 chr9 7723135 7723615 -110139012 - MER9 LTR ERVK -1 510 1 40 0 0 0 chr9 7723762 7723802 -110138825 + AT_rich Low_complexity Low_complexity 1 40 0 272 307 45 23 chr9 7724920 7725008 -110137619 - MIR SINE MIR -89 119 30 23 0 0 0 chr9 7725631 7725654 -110136973 + AT_rich Low_complexity Low_complexity 1 23 0 222 290 54 54 chr9 7725684 7725777 -110136850 - MIR SINE MIR -97 111 19 252 0 0 0 chr9 7725784 7725812 -110136815 + (TG)n Simple_repeat Simple_repeat 2 29 0 340 336 36 0 chr9 7725899 7726039 -110136588 + MIR SINE MIR 112 256 -6 773 176 22 60 chr9 7726124 7726306 -110136321 - MER5B DNA MER1_type 0 178 4 398 270 0 0 chr9 7726672 7726761 -110135866 - L2 LINE L2 0 3272 3184 976 201 54 0 chr9 7727781 7727985 -110134642 - MER20 DNA MER1_type 0 219 5 324 0 0 0 chr9 7728296 7728332 -110134295 + (CA)n Simple_repeat Simple_repeat 2 37 0 245 250 44 29 chr9 7728397 7728465 -110134162 + MIR SINE MIR 72 140 -68 216 0 0 0 chr9 7728465 7728489 -110134138 + (CAT)n Simple_repeat Simple_repeat 2 25 0 622 275 60 63 chr9 7728537 7728901 -110133726 + L1MB1 LINE L1 413 775 -5528 1626 243 47 56 chr9 7729352 7729436 -110133191 + L1MB1 LINE L1 801 884 -5429 2457 136 0 8 chr9 7729436 7729812 -110132815 + THE1C LTR MaLR 1 373 -2 1626 243 47 56 chr9 7729812 7730648 -110131979 + L1MB1 LINE L1 884 1793 -4520 * 3458 232 27 7 chr9 7730637 7731628 -110130999 - L1 LINE L1 -2369 3777 2767 4980 169 30 13 chr9 7731630 7733339 -110129288 + L1PA16 LINE L1 4105 5833 -333 1059 85 0 0 chr9 7733340 7733469 -110129158 + AluSg SINE Alu 5 133 -177 2369 101 7 0 chr9 7733469 7733775 -110128852 + AluSg SINE Alu 1 308 -2 1580 156 25 54 chr9 7733776 7734129 -110128498 + L1PA16 LINE L1 5815 6157 -9 5763 211 56 11 chr9 7734987 7737483 -110125144 + L1MB1 LINE L1 3798 6404 0 429 279 65 13 chr9 7738362 7738516 -110124111 + L2 LINE L2 34 195 -3119 672 278 17 43 chr9 7738535 7738769 -110123858 + L2 LINE L2 3078 3305 -8 299 290 29 88 chr9 7738952 7739393 -110123234 + MLT1I LTR MaLR 1 409 0 220 304 98 29 chr9 7739678 7739780 -110122847 - L2 LINE L2 -2 3311 3203 512 255 180 12 chr9 7740014 7740175 -110122452 - MIR SINE MIR -59 203 16 465 297 24 0 chr9 7740641 7740806 -110121821 - LTR33 LTR ERVL -4 517 349 2102 220 28 18 chr9 7740836 7741336 -110121291 + MLT1D LTR MaLR 1 505 0 900 267 50 21 chr9 7741336 7741617 -110121010 - LTR33 LTR ERVL -232 289 1 351 356 58 14 chr9 7742065 7742273 -110120354 - L2 LINE L2 -214 3058 2842 189 132 0 0 chr9 7742719 7742757 -110119870 + (CA)n Simple_repeat Simple_repeat 2 39 0 200 294 103 66 chr9 7743241 7743377 -110119250 + MIR3 SINE MIR 8 148 -60 279 318 155 0 chr9 7743441 7743589 -110119038 + MIR SINE MIR 51 221 -41 745 142 0 15 chr9 7746010 7746144 -110116483 - FLAM_C SINE Alu 0 133 2 238 276 20 82 chr9 7747011 7747109 -110115518 + L2 LINE L2 1142 1233 -2081 5636 167 13 15 chr9 7747109 7748984 -110113643 - L1PB1 LINE L1 0 6151 4286 2169 134 0 0 chr9 7748984 7749283 -110113344 - AluSq SINE Alu -14 299 1 5636 167 13 15 chr9 7749283 7749550 -110113077 - L1PB1 LINE L1 -1865 4286 4020 1556 326 65 56 chr9 7749556 7749920 -110112707 + L2 LINE L2 1229 1588 -1726 861 149 0 0 chr9 7749920 7750074 -110112553 + L1MA4 LINE L1 6145 6298 -2 1556 326 65 56 chr9 7750074 7750571 -110112056 + L2 LINE L2 1588 2098 -1216 227 303 73 28 chr9 7750956 7751065 -110111562 - L2 LINE L2 -220 3052 2939 325 325 56 51 chr9 7751499 7751874 -110110753 + HAL1 LINE L1 4 380 -2127 339 310 92 28 chr9 7751939 7752081 -110110546 + HAL1 LINE L1 480 630 -1877 2297 89 0 7 chr9 7752322 7752614 -110110013 - AluSg SINE Alu -20 290 1 207 221 13 39 chr9 7752678 7752755 -110109872 + A-rich Low_complexity Low_complexity 5 79 0 2241 152 12 14 chr9 7753379 7753799 -110108828 + L1MB3 LINE L1 5757 6175 -8 39 60 0 0 chr9 7753958 7754025 -110108602 + AT_rich Low_complexity Low_complexity 1 67 0 1929 147 17 3 chr9 7754025 7754324 -110108303 + AluSx SINE Alu 1 303 -9 411 285 57 85 chr9 7755517 7755763 -110106864 - MIR3 SINE MIR -18 244 6 1830 160 0 14 chr9 7757009 7757303 -110105324 + AluJb SINE Alu 1 290 -22 857 284 96 11 chr9 7757621 7757984 -110104643 + MLT1I LTR MaLR 1 394 -15 338 288 25 25 chr9 7759458 7759576 -110103051 + MER5A DNA MER1_type 35 152 -37 288 222 28 0 chr9 7759805 7759877 -110102750 + MLT1L LTR MaLR 5 78 -537 242 244 155 37 chr9 7759947 7760124 -110102503 + MLT1J2 LTR MaLR 72 315 -196 313 315 89 98 chr9 7761007 7761334 -110101293 + L2 LINE L2 2930 3253 -19 2774 10 0 0 chr9 7761340 7761643 -110100984 + AluYb8 SINE Alu 16 318 0 23 0 0 0 chr9 7761643 7761666 -110100961 + AT_rich Low_complexity Low_complexity 1 23 0 255 289 22 11 chr9 7761704 7761794 -110100833 - MER103 DNA DNA -75 91 1 395 349 12 41 chr9 7761891 7761992 -110100635 - MIR3 SINE MIR -21 187 92 1732 251 40 41 chr9 7761992 7762547 -110100080 - MLT2B3 LTR ERVL 0 554 1 395 349 12 41 chr9 7762547 7762617 -110100010 - MIR3 SINE MIR -116 92 21 1134 302 51 20 chr9 7763039 7763430 -110099197 + MLT2E LTR ERVL 167 569 -59 1454 264 79 39 chr9 7763617 7764369 -110098258 + ERVL LTR ERVL 2104 2900 -2585 1924 163 56 28 chr9 7764384 7764459 -110098168 - MLT2A2 LTR ERVL 0 554 483 2284 114 0 0 chr9 7764459 7764767 -110097860 + AluSq SINE Alu 1 308 -5 1924 163 56 28 chr9 7764767 7765234 -110097393 - MLT2A2 LTR ERVL -71 483 1 182 33 67 0 chr9 7765529 7765559 -110097068 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 1869 233 93 47 chr9 7765843 7766487 -110096140 + ERVL LTR ERVL 3813 4486 -1278 1891 278 66 12 chr9 7766540 7766794 -110095833 + ERVL LTR ERVL 4572 4811 -953 3603 142 23 5 chr9 7766794 7767393 -110095234 + MER4B LTR ERV1 1 610 0 1891 278 66 12 chr9 7767393 7767786 -110094841 + ERVL LTR ERVL 4811 5254 -510 3591 173 21 6 chr9 7767788 7768486 -110094141 + MER50 LTR ERV1 1 709 -25 4517 125 62 15 chr9 7768486 7769041 -110093586 - MER4E LTR ERV1 0 779 179 2202 91 14 7 chr9 7769041 7769328 -110093299 - AluSc SINE Alu -20 289 1 4517 125 62 15 chr9 7769328 7769516 -110093111 - MER4E LTR ERV1 -600 179 1 1112 272 91 7 chr9 7769535 7769954 -110092673 + MLT2B2 LTR ERVL 1 454 -61 210 250 0 0 chr9 7769995 7770039 -110092588 + (TATG)n Simple_repeat Simple_repeat 2 45 0 396 0 0 0 chr9 7770047 7770091 -110092536 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 270 122 0 0 chr9 7770123 7770164 -110092463 + ERVL LTR ERVL 5257 5297 -467 25 0 0 0 chr9 7771215 7771240 -110091387 + AT_rich Low_complexity Low_complexity 1 25 0 199 299 104 0 chr9 7771874 7771941 -110090686 - L2 LINE L2 -39 3233 3160 1775 190 16 19 chr9 7772879 7772941 -110089686 - MLT1A1 LTR MaLR 0 365 304 574 88 0 0 chr9 7772941 7773021 -110089606 + MADE1 DNA Mariner 1 80 0 1775 190 16 19 chr9 7773021 7773322 -110089305 - MLT1A1 LTR MaLR -61 304 3 303 304 188 0 chr9 7773966 7774078 -110088549 + MIR3 SINE MIR 67 199 -9 539 289 96 56 chr9 7774118 7774568 -110088059 + L1ME LINE L1 21 488 -5582 455 279 52 73 chr9 7774574 7774744 -110087883 + L1ME LINE L1 102 274 -5796 1960 160 0 0 chr9 7774744 7775050 -110087577 + AluSx SINE Alu 1 306 -6 455 279 52 73 chr9 7775050 7775248 -110087379 + L1ME LINE L1 274 462 -5608 * 28925 103 13 25 chr9 7775230 7781333 -110081294 + L1PA7 LINE L1 371 6468 -1 4083 276 69 10 chr9 7781339 7783223 -110079404 + L1M4 LINE L1 2271 4266 -1880 1106 216 82 40 chr9 7783228 7783318 -110079309 + L1M4 LINE L1 4407 4492 -1654 219 36 0 0 chr9 7783318 7783346 -110079281 + (CA)n Simple_repeat Simple_repeat 2 29 0 1106 216 82 40 chr9 7783346 7783705 -110078922 + L1M4 LINE L1 4492 4875 -1271 439 237 96 20 chr9 7783731 7783929 -110078698 - MLT1J1 LTR MaLR 0 446 234 487 242 8 8 chr9 7784004 7784124 -110078503 - MLT1J1 LTR MaLR -326 120 1 396 0 0 0 chr9 7784847 7784891 -110077736 + (TG)n Simple_repeat Simple_repeat 2 45 0 227 313 82 41 chr9 7785255 7785402 -110077225 - MIR SINE MIR -14 248 96 302 206 29 0 chr9 7785889 7785957 -110076670 + Charlie8 DNA MER1_type 1348 1417 -1000 335 349 11 48 chr9 7786108 7786297 -110076330 + MER5A DNA MER1_type 2 183 -6 1650 140 118 4 chr9 7786626 7786905 -110075722 - AluSx SINE Alu -1 311 1 21 57 0 0 chr9 7786908 7786943 -110075684 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr9 7787478 7787502 -110075125 + (T)n Simple_repeat Simple_repeat 1 24 0 202 349 0 0 chr9 7789071 7789134 -110073493 - L2 LINE L2 0 3272 3210 856 222 63 12 chr9 7790608 7791048 -110071579 - MLT1D LTR MaLR 0 505 7 6803 193 31 7 chr9 7791266 7791822 -110070805 - L1PA16 LINE L1 -1 6165 5624 2041 141 7 0 chr9 7791822 7792119 -110070508 - AluSx SINE Alu -13 299 1 6803 193 31 7 chr9 7792119 7793985 -110068642 - L1PA16 LINE L1 -542 5624 3675 213 65 0 0 chr9 7793985 7794016 -110068611 + (TTG)n Simple_repeat Simple_repeat 2 32 0 6803 193 31 7 chr9 7794016 7794143 -110068484 - L1PA16 LINE L1 -2491 3675 3553 3007 85 15 0 chr9 7794145 7794556 -110068071 + MLT2A2 LTR ERVL 2 418 -35 313 187 33 44 chr9 7794570 7794661 -110067966 + L1MC4 LINE L1 6614 6703 -1339 374 127 14 0 chr9 7794663 7794734 -110067893 + (TA)n Simple_repeat Simple_repeat 1 72 0 326 100 0 0 chr9 7794736 7794786 -110067841 + MLT2A2 LTR ERVL 404 453 0 5205 260 32 31 chr9 7794786 7796868 -110065759 - L1PA16 LINE L1 -2590 3556 1473 4871 234 59 26 chr9 7797054 7797724 -110064903 + L1ME1 LINE L1 3304 3950 -2196 1990 195 29 0 chr9 7797724 7798103 -110064524 + MLT1B LTR MaLR 1 390 0 4871 234 59 26 chr9 7798103 7799185 -110063442 + L1ME1 LINE L1 3950 5115 -1031 1643 207 58 24 chr9 7799194 7799610 -110063017 + L1ME1 LINE L1 5491 5920 -246 1946 144 31 7 chr9 7799622 7799913 -110062714 + AluSx SINE Alu 1 298 -14 425 228 6 64 chr9 7799919 7799964 -110062663 + L1MA10 LINE L1 6172 6218 -116 1764 189 5 39 chr9 7799964 7800346 -110062281 + MLT1A2 LTR MaLR 4 372 -2 425 228 6 64 chr9 7800346 7800471 -110062156 + L1MA10 LINE L1 6218 6332 -2 1812 141 3 40 chr9 7803006 7803303 -110059324 - AluSq SINE Alu -27 286 1 953 252 20 56 chr9 7803386 7803630 -110058997 + MLT2F LTR ERVL 369 601 -62 287 85 21 0 chr9 7803630 7803677 -110058950 + (CA)n Simple_repeat Simple_repeat 2 49 0 953 252 20 56 chr9 7803677 7803738 -110058889 + MLT2F LTR ERVL 601 663 0 374 321 9 0 chr9 7803859 7803965 -110058662 - L2 LINE L2 -19 3294 3188 183 80 0 0 chr9 7805122 7805147 -110057480 + (TC)n Simple_repeat Simple_repeat 2 26 0 369 0 0 0 chr9 7805147 7805188 -110057439 + (CA)n Simple_repeat Simple_repeat 1 41 0 642 305 59 29 chr9 7805200 7805642 -110056985 - L1MEc LINE L1 -5873 523 69 703 57 0 0 chr9 7806311 7806399 -110056228 + AluY SINE Alu 1 88 -222 2530 59 3 3 chr9 7806746 7807052 -110055575 + AluSc SINE Alu 4 309 0 240 35 0 0 chr9 7807291 7807320 -110055307 + (A)n Simple_repeat Simple_repeat 1 29 0 304 247 37 12 chr9 7807321 7807402 -110055225 - L2 LINE L2 -5 3267 3185 320 333 42 0 chr9 7807834 7807954 -110054673 - MIR SINE MIR -83 179 55 195 424 47 0 chr9 7809305 7809390 -110053237 - L2 LINE L2 -63 3209 3121 208 353 60 24 chr9 7809540 7809707 -110052920 + L2 LINE L2 2507 2679 -635 242 254 32 16 chr9 7809787 7809850 -110052777 - L2 LINE L2 -1 3312 3249 2083 179 3 6 chr9 7810157 7810520 -110052107 - MLT1A1 LTR MaLR -3 362 1 625 274 46 20 chr9 7810523 7810720 -110051907 + MIR SINE MIR 61 262 0 254 309 9 18 chr9 7811706 7811816 -110050811 + CT-rich Low_complexity Low_complexity 4 112 0 228 200 0 20 chr9 7812252 7812302 -110050325 - L2 LINE L2 -5 3267 3219 1928 174 10 0 chr9 7812519 7812824 -110049803 + AluJb SINE Alu 5 312 0 391 365 97 24 chr9 7813751 7814011 -110048616 - L2 LINE L2 -767 2547 2267 275 281 41 89 chr9 7814011 7814157 -110048470 + MIR3 SINE MIR 4 142 -66 333 280 59 59 chr9 7815103 7815221 -110047406 - MER5B DNA MER1_type 0 178 61 1401 137 30 5 chr9 7815370 7815660 -110046967 + MLT2D LTR ERVL 3 349 -65 1304 20 0 0 chr9 7815670 7815822 -110046805 - L1PA2 LINE L1 0 6155 6004 809 175 0 0 chr9 7816632 7816758 -110045869 - FLAM_A SINE Alu -7 126 1 180 321 19 0 chr9 7817604 7817657 -110044970 + L2 LINE L2 3255 3308 -5 547 313 35 31 chr9 7817807 7818034 -110044593 + MIR SINE MIR 8 235 -27 182 289 0 0 chr9 7818004 7818049 -110044578 + L2 LINE L2 3251 3295 -18 * 2080 198 75 13 chr9 7818080 7818545 -110044082 + MLT1D LTR MaLR 12 505 0 2367 317 112 59 chr9 7819161 7819786 -110042841 - L2 LINE L2 0 3313 2723 2131 75 11 4 chr9 7819786 7820052 -110042575 - AluSp SINE Alu -7 306 39 2367 317 112 59 chr9 7820052 7822061 -110040566 - L2 LINE L2 -590 2723 541 239 267 22 0 chr9 7822084 7822174 -110040453 + (TATATG)n Simple_repeat Simple_repeat 4 95 0 333 292 23 46 chr9 7823601 7823731 -110038896 - L2 LINE L2 0 3313 3187 342 0 0 0 chr9 7824212 7824250 -110038377 + (CA)n Simple_repeat Simple_repeat 2 39 0 1984 163 14 0 chr9 7825883 7826238 -110036389 + MER46B DNA MER2_type -1 233 -3 291 303 138 9 chr9 7826242 7826351 -110036276 - MIR SINE MIR -130 132 10 484 305 17 40 chr9 7826393 7826570 -110036057 - MER5B DNA MER1_type -3 175 3 967 321 111 38 chr9 7826620 7826662 -110035965 - L2 LINE L2 -5 3308 3271 1715 155 197 11 chr9 7826662 7827023 -110035604 + MSTA LTR MaLR 1 428 0 9583 118 35 39 chr9 7827025 7828608 -110034019 + MSTA-int LTR MaLR 3 1580 0 1363 176 92 42 chr9 7828608 7828965 -110033662 + THE1C LTR MaLR 1 375 0 967 321 111 38 chr9 7828965 7829367 -110033260 - L2 LINE L2 -41 3272 2827 5857 147 11 31 chr9 7830673 7831471 -110031156 - L1MA3 LINE L1 0 7724 6912 2133 117 3 13 chr9 7831471 7831770 -110030857 - AluSq SINE Alu -8 305 10 5857 147 11 31 chr9 7831770 7833062 -110029565 - L1MA3 LINE L1 -812 6912 5677 19314 167 39 12 chr9 7833070 7834730 -110027897 - L1MA3 LINE L1 -2748 4817 3202 2265 104 0 13 chr9 7834730 7835037 -110027590 + AluSg SINE Alu 1 303 -7 19314 167 39 12 chr9 7835037 7835856 -110026771 - L1MA3 LINE L1 -4363 3202 2406 2397 84 0 10 chr9 7835856 7836166 -110026461 - AluY SINE Alu -4 307 1 19314 167 39 12 chr9 7836166 7838364 -110024263 - L1MA3 LINE L1 -5159 2406 14 369 0 0 0 chr9 7838596 7838637 -110023990 + (GA)n Simple_repeat Simple_repeat 2 42 0 199 318 30 15 chr9 7838831 7838897 -110023730 - L3b LINE CR1 0 1583 1517 2098 138 33 28 chr9 7838917 7839279 -110023348 - THE1B LTR MaLR 0 364 1 384 360 14 7 chr9 7839279 7839418 -110023209 - MIR3 SINE MIR -25 183 44 243 295 84 0 chr9 7840548 7840643 -110021984 + MIR SINE MIR 121 223 -39 242 294 71 0 chr9 7840677 7840762 -110021865 + MIR SINE MIR 121 211 -51 303 264 45 15 chr9 7840837 7841038 -110021589 + MER113 DNA MER1_type? 19 225 -296 480 229 238 0 chr9 7841109 7841231 -110021396 + MER5A DNA MER1_type 9 159 -30 350 245 115 43 chr9 7842417 7842556 -110020071 - MIR3 SINE MIR 0 208 60 1124 265 54 52 chr9 7844326 7844771 -110017856 - MLT1J1 LTR MaLR 0 446 1 340 296 12 0 chr9 7844900 7844981 -110017646 - L2 LINE L2 0 3272 3191 180 0 0 0 chr9 7845306 7845326 -110017301 + (CAA)n Simple_repeat Simple_repeat 2 21 0 293 298 107 16 chr9 7845546 7845667 -110016960 + MIR SINE MIR 17 148 -114 1363 213 24 14 chr9 7846510 7846801 -110015826 - MLT1A1 LTR MaLR -71 294 1 378 237 89 106 chr9 7847197 7847433 -110015194 - MLT1L LTR MaLR -221 394 163 504 196 0 14 chr9 7847523 7847661 -110014966 - LTR37A LTR ERV1 0 426 291 34800 90 18 11 chr9 7847699 7853809 -110008818 + L1PA6 LINE L1 11 6154 0 21 0 0 0 chr9 7853809 7853830 -110008797 + AT_rich Low_complexity Low_complexity 1 21 0 1978 118 38 3 chr9 7853869 7854157 -110008470 + AluSx SINE Alu 1 298 -14 634 221 12 91 chr9 7854166 7854420 -110008207 - LTR37A LTR ERV1 -174 252 19 827 217 27 0 chr9 7855464 7855648 -110006979 - MER5A DNA MER1_type 0 189 1 191 231 183 10 chr9 7857224 7857328 -110005299 - MIR SINE MIR 0 262 141 5923 88 11 16 chr9 7857395 7858293 -110004334 - L1PA12 LINE L1 0 6168 5275 1191 190 86 30 chr9 7858383 7858793 -110003834 + MLT1D LTR MaLR 1 483 -22 242 243 139 56 chr9 7859491 7859635 -110002992 - MIR SINE MIR -26 236 81 572 295 100 33 chr9 7860601 7860930 -110001697 + LTR33 LTR ERVL 167 517 -4 212 167 0 0 chr9 7862361 7862403 -110000224 + A-rich Low_complexity Low_complexity 1 42 0 1047 291 42 9 chr9 7863874 7864207 -109998420 - MLT1I LTR MaLR -3 406 63 222 320 120 10 chr9 7865346 7865446 -109997181 - L2 LINE L2 0 3313 3203 242 217 0 0 chr9 7866168 7866214 -109996413 - MIR SINE MIR -110 152 107 1101 211 52 83 chr9 7866570 7867015 -109995612 + MLT1C LTR MaLR 37 467 0 217 87 22 22 chr9 7867044 7867090 -109995537 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 1822 150 89 29 chr9 7867169 7867549 -109995078 + MER57A LTR ERV1 1 403 0 3062 168 3 43 chr9 7867582 7868111 -109994516 + MLT2B3 LTR ERVL 1 507 -47 1826 171 33 0 chr9 7868111 7868444 -109994183 + MER2 DNA MER2_type 1 344 0 3062 168 3 43 chr9 7868444 7868491 -109994136 + MLT2B3 LTR ERVL 507 554 0 293 216 0 0 chr9 7868642 7868693 -109993934 - MLT2B3 LTR ERVL -175 379 329 430 292 192 9 chr9 7869085 7869304 -109993323 - MIR SINE MIR 0 262 4 200 354 0 97 chr9 7869452 7869565 -109993062 + MIR SINE MIR 19 120 -88 12173 129 27 13 chr9 7871167 7872108 -109990519 - Tigger1 DNA MER2_type 0 2418 1491 2259 115 0 0 chr9 7872108 7872404 -109990223 - AluSg SINE Alu -14 296 1 12173 129 27 13 chr9 7872404 7873754 -109988873 - Tigger1 DNA MER2_type -927 1491 1 379 311 7 40 chr9 7873916 7874064 -109988563 - L2 LINE L2 -4 3309 3167 448 293 66 52 chr9 7874264 7874476 -109988151 - MLT1K LTR MaLR -185 403 189 373 215 45 0 chr9 7874543 7874632 -109987995 - FRAM SINE Alu -72 94 11 229 262 7 117 chr9 7874941 7875086 -109987541 - MIR SINE MIR -27 235 107 196 265 61 92 chr9 7875804 7875902 -109986725 - MIR SINE MIR -48 214 120 914 210 88 46 chr9 7875964 7876293 -109986334 - MER2 DNA MER2_type -1 343 1 261 0 0 0 chr9 7877345 7877374 -109985253 + (T)n Simple_repeat Simple_repeat 1 29 0 641 256 55 29 chr9 7877453 7877691 -109984936 - MLT1A2 LTR MaLR 0 374 131 222 413 7 21 chr9 7877839 7877982 -109984645 + MIR SINE MIR 6 146 -116 537 304 42 6 chr9 7878181 7878349 -109984278 + MER5B DNA MER1_type 1 174 -4 5161 170 29 21 chr9 7878445 7879464 -109983163 - L1PA16 LINE L1 -10 6156 5123 1860 180 3 0 chr9 7879464 7879775 -109982852 + AluJb SINE Alu 1 312 0 5161 170 29 21 chr9 7879775 7880493 -109982134 - L1PA16 LINE L1 -1043 5123 4412 1718 237 60 5 chr9 7880972 7881390 -109981237 + MLT1A1-int LTR MaLR 1294 1734 -1 1364 217 26 29 chr9 7881397 7881710 -109980917 + MLT1A1 LTR MaLR 1 312 -53 365 298 0 11 chr9 7881883 7881977 -109980650 + L2 LINE L2 3180 3272 0 464 229 28 28 chr9 7882615 7882759 -109979868 - L1MC4a LINE L1 -1839 5969 5826 185 267 17 50 chr9 7883049 7883109 -109979518 - L2 LINE L2 -667 2647 2590 964 271 12 0 chr9 7883780 7884027 -109978600 + MIR SINE MIR 13 262 0 6722 208 37 53 chr9 7884452 7886170 -109976457 + L1ME1 LINE L1 3657 5338 -828 1469 173 0 0 chr9 7886170 7886401 -109976226 + AluJb SINE Alu 76 306 -6 6722 208 37 53 chr9 7886401 7886892 -109975735 + L1ME1 LINE L1 5338 5835 -331 324 91 0 30 chr9 7886896 7886946 -109975681 + L1MA7 LINE L1 6227 6290 -1 1722 182 8 54 chr9 7886958 7886994 -109975633 + L1MB5 LINE L1 5821 5857 -317 3735 111 8 2 chr9 7886994 7887501 -109975126 + MER75 DNA T2_type 5 514 0 1722 182 8 54 chr9 7887501 7887698 -109974929 + L1MB5 LINE L1 5857 6033 -141 1731 182 7 3 chr9 7887698 7887994 -109974633 - AluJb SINE Alu -15 297 1 1722 182 8 54 chr9 7887994 7888128 -109974499 + L1MB5 LINE L1 6033 6172 -2 301 372 30 12 chr9 7888323 7888487 -109974140 + L3 LINE CR1 35 201 -1376 432 248 74 109 chr9 7888497 7888699 -109973928 + L3 LINE CR1 403 597 -980 216 333 211 0 chr9 7888939 7889029 -109973598 - L2 LINE L2 -22 3250 3142 440 300 73 0 chr9 7889148 7889258 -109973369 - MLT1J2 LTR MaLR -145 305 188 311 280 30 10 chr9 7889290 7889390 -109973237 - MLT1J2 LTR MaLR -342 108 7 477 28 9 255 chr9 7889658 7889764 -109972863 - MADE1 DNA Mariner 0 80 1 485 292 92 33 chr9 7891091 7891331 -109971296 + MIR SINE MIR 9 262 0 208 333 14 0 chr9 7891988 7892057 -109970570 - MIR SINE MIR -113 149 80 286 272 25 0 chr9 7893196 7893277 -109969350 + L2 LINE L2 2998 3080 -192 228 324 109 39 chr9 7893481 7893711 -109968916 + L2 LINE L2 2772 3057 -215 1973 138 41 29 chr9 7894541 7894881 -109967746 + MER2 DNA MER2_type 1 344 0 219 259 55 28 chr9 7895023 7895121 -109967506 + L2 LINE L2 2875 2983 -330 1154 259 95 18 chr9 7895159 7895549 -109967078 - LTR16A LTR ERVL -13 437 18 441 253 140 43 chr9 7896029 7896400 -109966227 - L1ME4a LINE L1 -1 6120 5714 430 313 40 45 chr9 7896565 7896741 -109965886 + MIR3 SINE MIR 33 207 -1 410 290 15 8 chr9 7897374 7897505 -109965122 - MIR SINE MIR -10 252 121 6080 161 46 18 chr9 7897914 7898338 -109964289 + Tigger1 DNA MER2_type 3 413 -2005 2188 96 0 0 chr9 7898338 7898610 -109964017 + AluSg SINE Alu 2 273 -37 222 37 0 0 chr9 7898614 7898641 -109963986 + (CAA)n Simple_repeat Simple_repeat 1 27 0 6080 161 46 18 chr9 7898641 7899295 -109963332 + Tigger1 DNA MER2_type 415 1117 -1301 2541 127 117 5 chr9 7899301 7899719 -109962908 + MER4C LTR ERV1 1 465 0 446 115 0 0 chr9 7899720 7899781 -109962846 + Tigger1 DNA MER2_type 1120 1180 -1238 7753 136 14 19 chr9 7899951 7900568 -109962059 + Tigger1 DNA MER2_type 1187 1795 -623 2191 134 0 0 chr9 7900568 7900873 -109961754 + AluSg SINE Alu 1 305 -5 7753 136 14 19 chr9 7900873 7901494 -109961133 + Tigger1 DNA MER2_type 1795 2418 0 239 257 149 0 chr9 7901897 7901971 -109960656 + L2 LINE L2 3203 3287 -26 7516 49 1 0 chr9 7902305 7903750 -109958877 - L1PA5 LINE L1 0 6154 4700 245 316 70 18 chr9 7904053 7904167 -109958460 - MIR SINE MIR -44 218 99 305 277 79 2 chr9 7904864 7904995 -109957632 + MIR SINE MIR 18 157 -92 639 301 128 38 chr9 7905751 7906595 -109956032 - L2 LINE L2 0 3313 2380 256 260 128 108 chr9 7906726 7906976 -109955651 + MIR SINE MIR 8 262 0 189 295 67 95 chr9 7907092 7907197 -109955430 + MIR SINE MIR 45 146 -62 211 263 147 32 chr9 7907353 7907448 -109955179 - MIR SINE MIR -71 191 86 1345 155 116 5 chr9 7907717 7908013 -109954614 - MER33 DNA MER1_type -4 320 1 195 100 0 0 chr9 7908312 7908342 -109954285 + (TA)n Simple_repeat Simple_repeat 2 31 0 333 270 174 0 chr9 7909286 7909401 -109953226 + MIR SINE MIR 60 194 -68 479 313 44 22 chr9 7910663 7910845 -109951782 + MER5A DNA MER1_type 1 186 -3 268 214 2 2 chr9 7911782 7911847 -109950780 - MLT1L LTR MaLR -137 465 310 219 289 0 0 chr9 7912200 7912245 -109950382 + polypurine Low_complexity Low_complexity 3 47 0 2269 97 0 17 chr9 7913483 7913783 -109948844 + AluY SINE Alu 1 295 -16 318 259 47 0 chr9 7915140 7915225 -109947402 - MIR3 SINE MIR -8 200 112 2044 299 56 19 chr9 7915235 7916217 -109946410 - L2 LINE L2 -1 3312 2298 2329 112 0 0 chr9 7917101 7917406 -109945221 - AluSx SINE Alu -7 305 1 211 294 22 66 chr9 7917500 7917636 -109944991 - MIR SINE MIR -42 220 91 237 263 158 21 chr9 7918218 7918313 -109944314 - MIR SINE MIR -69 193 86 244 207 64 129 chr9 7918560 7918700 -109943927 + MIR SINE MIR 66 196 -66 594 101 13 0 chr9 7918851 7918930 -109943697 - MADE1 DNA Mariner 0 80 1 262 315 130 55 chr9 7919496 7919595 -109943032 + L2 LINE L2 3116 3231 -41 1743 188 94 31 chr9 7919595 7919946 -109942681 - MER93b LTR ERV1 0 373 1 262 315 130 55 chr9 7919946 7919992 -109942635 + L2 LINE L2 3231 3272 0 26 0 0 0 chr9 7920223 7920249 -109942378 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr9 7920453 7920477 -109942150 + GC_rich Low_complexity Low_complexity 1 24 0 2472 130 154 82 chr9 7920722 7921285 -109941342 - LTR18B LTR ERVL -10 604 1 10693 160 10 2 chr9 7921438 7923079 -109939548 - HERVL18 LTR ERVL 0 6047 4394 5068 166 8 65 chr9 7923081 7923995 -109938632 - HERVL18 LTR ERVL -2468 3579 2718 * 13385 189 15 5 chr9 7923992 7926293 -109936334 - HERVL18 LTR ERVL -3595 2452 68 969 228 0 0 chr9 7926307 7926487 -109936140 + HERVL18 LTR ERVL 1065 1244 -4803 2411 135 136 131 chr9 7926576 7927185 -109935442 - LTR18B LTR ERVL 0 614 3 480 369 5 5 chr9 7927495 7927682 -109934945 - MIR3 SINE MIR -2 206 20 717 195 32 32 chr9 7927761 7927915 -109934712 - MER5A DNA MER1_type -35 154 1 722 328 80 48 chr9 7927982 7928986 -109933641 - L2 LINE L2 0 3272 2233 326 283 242 0 chr9 7929279 7929399 -109933228 + MIR SINE MIR 89 237 -25 1737 204 115 87 chr9 7929650 7930257 -109932370 - MLT1E3 LTR MaLR 0 624 1 180 0 0 0 chr9 7930503 7930523 -109932104 + (A)n Simple_repeat Simple_repeat 1 20 0 2451 158 61 7 chr9 7931844 7932256 -109930371 + Tigger2a DNA MER2_type 1 434 0 244 353 49 8 chr9 7932321 7932443 -109930184 + L3 LINE CR1 1356 1482 -95 213 364 64 16 chr9 7933104 7933261 -109929366 + MIR SINE MIR 55 223 -39 26 88 0 0 chr9 7933422 7933490 -109929137 + AT_rich Low_complexity Low_complexity 1 68 0 279 297 59 20 chr9 7933942 7934043 -109928584 - MIR SINE MIR -48 214 110 287 282 141 43 chr9 7934345 7934508 -109928119 + MIR SINE MIR 20 198 -64 21 0 0 0 chr9 7934530 7934551 -109928076 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr9 7935242 7935264 -109927363 + GC_rich Low_complexity Low_complexity 1 22 0 2341 91 0 13 chr9 7935604 7935911 -109926716 - AluSq SINE Alu -10 303 1 10975 136 42 7 chr9 7935916 7937965 -109924662 - Tigger1 DNA MER2_type -242 2176 1 260 250 9 26 chr9 7938763 7938879 -109923748 + (TA)n Simple_repeat Simple_repeat 1 114 0 396 59 0 0 chr9 7938884 7938935 -109923692 + (TG)n Simple_repeat Simple_repeat 1 51 0 359 329 43 23 chr9 7938937 7939115 -109923512 + MIR3 SINE MIR 10 194 -14 26 0 0 0 chr9 7939370 7939396 -109923231 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr9 7940078 7940099 -109922528 + AT_rich Low_complexity Low_complexity 1 21 0 1087 286 107 28 chr9 7940236 7940770 -109921857 - L1MC4a LINE L1 -1926 5882 5307 383 303 139 24 chr9 7940773 7941146 -109921481 - L1MC4a LINE L1 -846 5300 4885 701 158 113 15 chr9 7941168 7941301 -109921326 + FAM SINE Alu 20 165 -20 23 68 0 0 chr9 7941302 7941346 -109921281 + AT_rich Low_complexity Low_complexity 1 44 0 329 169 12 0 chr9 7941365 7941448 -109921179 + (TA)n Simple_repeat Simple_repeat 2 85 0 542 341 65 11 chr9 7941448 7941944 -109920683 - L1MC4a LINE L1 -1301 4845 4318 342 0 0 0 chr9 7942009 7942047 -109920580 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 335 76 38 chr9 7942058 7942348 -109920279 - L1MC4a LINE L1 -2476 3670 3370 1650 199 0 4 chr9 7942354 7942635 -109919992 + AluJo SINE Alu 1 280 -32 1423 244 101 7 chr9 7942722 7943136 -109919491 + MLT1D LTR MaLR 51 503 -2 560 217 45 19 chr9 7943215 7943372 -109919255 - HAL1b LINE L1 -849 499 339 24 53 0 0 chr9 7943953 7943991 -109918636 + AT_rich Low_complexity Low_complexity 1 38 0 663 238 50 30 chr9 7946156 7946358 -109916269 + MLT1I LTR MaLR 204 409 0 294 203 68 14 chr9 7946356 7946430 -109916197 + MER20B DNA MER1_type 1 78 -705 * 21 71 0 0 chr9 7946655 7946697 -109915930 + AT_rich Low_complexity Low_complexity 1 42 0 233 316 13 26 chr9 7946723 7946799 -109915828 + L2 LINE L2 3190 3264 -8 466 301 38 0 chr9 7948821 7948954 -109913673 - MIR SINE MIR -64 198 61 415 306 108 16 chr9 7949001 7949187 -109913440 - MIR SINE MIR -59 203 1 480 319 32 27 chr9 7949607 7949795 -109912832 - MIR SINE MIR -40 222 34 224 100 25 0 chr9 7950881 7950921 -109911706 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 1350 13 0 0 chr9 7950927 7951082 -109911545 - L1PA2 LINE L1 -4 6151 5997 572 106 14 0 chr9 7951082 7951172 -109911455 + L1PA2 LINE L1 5903 6000 -161 21 36 0 0 chr9 7951740 7951768 -109910859 + AT_rich Low_complexity Low_complexity 1 28 0 7395 26 8 0 chr9 7952075 7952943 -109909684 - L1PA5 LINE L1 -5 6149 5275 263 296 35 70 chr9 7953191 7953210 -109909417 - MER5A DNA MER1_type -1 188 170 1359 171 117 107 chr9 7953210 7953308 -109909319 - MSTD LTR MaLR 0 396 300 2308 110 0 3 chr9 7953308 7953618 -109909009 - AluSg SINE Alu -1 309 1 1359 171 117 107 chr9 7953618 7953911 -109908716 - MSTD LTR MaLR -96 300 1 263 296 35 70 chr9 7953911 7954006 -109908621 - MER5A DNA MER1_type -19 170 78 2297 248 55 23 chr9 7954013 7954674 -109907953 + L1ME1 LINE L1 5480 6161 -5 363 44 0 0 chr9 7954801 7954846 -109907781 + (TG)n Simple_repeat Simple_repeat 1 45 0 219 186 0 0 chr9 7955082 7955125 -109907502 + (TATATG)n Simple_repeat Simple_repeat 3 45 0 1451 127 16 65 chr9 7955134 7955441 -109907186 + L1MB8 LINE L1 5887 6178 0 2528 233 49 50 chr9 7955523 7956465 -109906162 + L1MC5 LINE L1 6638 7578 -383 445 242 117 16 chr9 7956606 7956734 -109905893 + MER21B LTR ERV1 363 503 -360 489 194 57 87 chr9 7956766 7956825 -109905802 + L1MC5 LINE L1 7618 7677 -284 2082 134 3 10 chr9 7956825 7957138 -109905489 - AluSx SINE Alu -1 311 1 489 194 57 87 chr9 7957138 7957377 -109905250 + L1MC5 LINE L1 7677 7907 -54 1141 201 219 72 chr9 7958344 7958861 -109903766 + MLT1E1 LTR MaLR 1 654 0 316 205 60 12 chr9 7959613 7959696 -109902931 + MIR3 SINE MIR 87 173 -35 1003 282 104 14 chr9 7959829 7960272 -109902355 + L1MC4a LINE L1 5413 5895 -1913 2283 89 3 52 chr9 7960282 7960609 -109902018 + AluSp SINE Alu 3 313 0 280 125 31 0 chr9 7960639 7960703 -109901924 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 71 0 0 chr9 7960968 7961010 -109901617 + AT_rich Low_complexity Low_complexity 1 42 0 615 298 8 55 chr9 7961566 7961804 -109900823 + MIR SINE MIR 20 246 -16 555 220 143 14 chr9 7961798 7961982 -109900645 - MIR SINE MIR -19 243 40 * 2156 255 18 8 chr9 7963549 7964063 -109898564 - LTR40a LTR ERVL 0 519 1 808 263 95 0 chr9 7964063 7964295 -109898332 - HERVL40 LTR ERVL 0 5530 5277 514 324 17 29 chr9 7964281 7964522 -109898105 - MER89-int LTR ERV1 -319 6482 6245 * 350 266 48 96 chr9 7964619 7964848 -109897779 - HERVL40 LTR ERVL -333 2704 2487 781 239 67 100 chr9 7965065 7965395 -109897232 - HERVL40 LTR ERVL -688 4660 2034 2119 222 24 30 chr9 7965429 7965670 -109896957 + MLT1D LTR MaLR 8 249 -256 2118 109 53 34 chr9 7965670 7966027 -109896600 - THE1B LTR MaLR 0 364 1 2119 222 24 30 chr9 7966027 7966286 -109896341 + MLT1D LTR MaLR 249 505 0 7038 251 47 30 chr9 7966288 7968187 -109894440 - HERVL40 LTR ERVL -1269 4261 2330 886 284 74 53 chr9 7968187 7968692 -109893935 + L2 LINE L2 2750 3274 -39 1240 199 45 87 chr9 8020552 8020933 -109841694 - MLT1A1 LTR MaLR 0 365 1 291 303 174 17 chr9 8021559 8021800 -109840827 + L1MC/D LINE L1 5294 5572 -2236 916 222 4 78 chr9 8021800 8021957 -109840670 + MLT1A1 LTR MaLR 1 133 -232 1807 174 0 10 chr9 8021957 8022262 -109840365 + AluJo SINE Alu 1 302 -10 916 222 4 78 chr9 8022262 8022361 -109840266 + MLT1A1 LTR MaLR 133 238 -127 489 306 41 0 chr9 8023594 8023741 -109838886 + MIR3 SINE MIR 50 202 -6 238 282 24 12 chr9 8024099 8024184 -109838443 - LTR16A1 LTR ERVL -25 432 347 682 271 107 27 chr9 8025301 8025469 -109837158 + LTR16C LTR ERVL 209 407 -84 756 164 99 6 chr9 8025469 8025640 -109836987 - MER53 DNA DNA 0 189 3 682 271 107 27 chr9 8025640 8025733 -109836894 + LTR16C LTR ERVL 407 491 0 509 284 52 90 chr9 8025877 8026243 -109836384 + MLT1J LTR MaLR 158 509 -2 249 333 0 29 chr9 8026295 8026364 -109836263 + L2 LINE L2 3009 3075 -238 204 330 144 0 chr9 8026415 8026512 -109836115 + MIR SINE MIR 152 262 0 2051 142 3 3 chr9 8026791 8027094 -109835533 + AluSg SINE Alu 1 303 -7 219 180 0 20 chr9 8027096 8027146 -109835481 + (ATTG)n Simple_repeat Simple_repeat 4 52 0 394 261 9 0 chr9 8027149 8027264 -109835363 + L1MC4 LINE L1 7922 8037 -5 256 220 186 0 chr9 8027311 8027370 -109835257 - MIR3 SINE MIR -48 160 91 223 305 0 0 chr9 8029053 8029112 -109833515 + (CA)n Simple_repeat Simple_repeat 2 60 0 302 298 165 0 chr9 8029127 8029248 -109833379 - L2 LINE L2 -12 3301 3161 1598 203 11 44 chr9 8029376 8029736 -109832891 + MER7A DNA MER2_type 1 346 0 193 377 57 16 chr9 8030131 8030253 -109832374 - L2 LINE L2 -9 3263 3137 566 345 22 9 chr9 8030369 8030601 -109832026 - MIR SINE MIR -10 252 18 1843 175 63 26 chr9 8030659 8031041 -109831586 - MSTD LTR MaLR 0 396 1 258 229 0 0 chr9 8031415 8031485 -109831142 + GA-rich Low_complexity Low_complexity 3 72 0 685 281 54 40 chr9 8032345 8032569 -109830058 - MIR SINE MIR -18 244 18 562 275 39 28 chr9 8032623 8032801 -109829826 + MLT1K LTR MaLR 26 205 -383 451 265 113 63 chr9 8032804 8033042 -109829585 + MLT1K LTR MaLR 331 580 -8 1907 197 14 3 chr9 8033387 8033738 -109828889 - MLT1A1 LTR MaLR 0 365 11 1573 214 27 24 chr9 8033753 8034126 -109828501 + MLT1A2 LTR MaLR 1 374 0 188 200 22 22 chr9 8034336 8034381 -109828246 + L2 LINE L2 3264 3308 -5 2343 167 151 10 chr9 8034404 8034666 -109827961 - MLT2B3 LTR ERVL 0 554 330 203 0 37 0 chr9 8034666 8034693 -109827934 + (GA)n Simple_repeat Simple_repeat 2 29 0 2343 167 151 10 chr9 8034693 8034914 -109827713 - MLT2B3 LTR ERVL -224 330 3 215 227 0 0 chr9 8035010 8035054 -109827573 + (TATG)n Simple_repeat Simple_repeat 1 44 0 507 33 0 0 chr9 8035056 8035117 -109827510 + (TCTA)n Simple_repeat Simple_repeat 4 64 0 420 269 40 86 chr9 8035901 8036076 -109826551 + MER63A DNA MER1_type 44 210 0 23 0 0 0 chr9 8036375 8036398 -109826229 + AT_rich Low_complexity Low_complexity 1 23 0 210 135 19 39 chr9 8037061 8037113 -109825514 + GA-rich Low_complexity Low_complexity 2 52 0 358 252 74 0 chr9 8037302 8037437 -109825190 + L1ME4a LINE L1 5690 5834 -287 1384 230 48 19 chr9 8037510 8037954 -109824673 + L1ME1 LINE L1 5688 6137 -27 303 253 100 65 chr9 8037959 8037988 -109824639 + L1ME4a LINE L1 5879 5906 -215 1811 178 45 17 chr9 8037988 8038343 -109824284 - MLT1A1 LTR MaLR 0 365 1 303 253 100 65 chr9 8038343 8038483 -109824144 + L1ME4a LINE L1 5906 6054 -67 239 276 13 13 chr9 8038531 8038607 -109824020 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 23 54 0 0 chr9 8039075 8039112 -109823515 + AT_rich Low_complexity Low_complexity 1 37 0 203 291 219 40 chr9 8039168 8039319 -109823308 - MIR SINE MIR -84 178 1 2731 29 3 0 chr9 8040599 8040909 -109821718 - AluY SINE Alu 0 311 1 189 226 0 0 chr9 8040948 8041001 -109821626 + (TA)n Simple_repeat Simple_repeat 1 53 0 388 135 135 0 chr9 8043426 8043500 -109819127 - MLT1B LTR MaLR -305 85 2 212 253 0 131 chr9 8043690 8043789 -109818838 - MIR SINE MIR -89 173 88 488 333 64 5 chr9 8045073 8045277 -109817350 - MIR SINE MIR 0 262 47 415 238 25 16 chr9 8046106 8046228 -109816399 - L1ME3A LINE L1 -284 5886 5764 21 0 0 0 chr9 8046591 8046612 -109816015 + AT_rich Low_complexity Low_complexity 1 21 0 321 264 110 12 chr9 8046939 8047126 -109815501 - L1ME3 LINE L1 -289 5873 5665 659 302 74 20 chr9 8047190 8047976 -109814651 - L1ME3 LINE L1 -649 5513 4677 417 293 91 55 chr9 8048042 8048605 -109814022 - L1ME3 LINE L1 -1952 4194 3612 341 278 137 67 chr9 8048692 8048976 -109813651 - L1ME3 LINE L1 -2611 3535 3232 2718 84 16 11 chr9 8049156 8049527 -109813100 + THE1C LTR MaLR 1 373 -2 4666 67 2 2 chr9 8051425 8052026 -109810601 - L1PA7 LINE L1 0 6154 5554 29 47 0 0 chr9 8052033 8052076 -109810551 + AT_rich Low_complexity Low_complexity 1 43 0 789 217 56 28 chr9 8052876 8053056 -109809571 - MER3 DNA MER1_type -24 185 1 181 270 0 0 chr9 8053316 8053353 -109809274 + L2 LINE L2 3256 3292 -21 299 219 37 0 chr9 8053363 8053445 -109809182 - LTR50 LTR ERVL 0 795 711 1141 245 133 28 chr9 8053471 8053969 -109808658 - LTR50 LTR ERVL -142 653 1 3005 201 98 28 chr9 8054100 8055537 -109807090 + L1MB5 LINE L1 4304 5851 -323 182 235 0 0 chr9 8055613 8055647 -109806980 - L2 LINE L2 -6 3266 3233 499 257 151 29 chr9 8055649 8055855 -109806772 - MIR SINE MIR 0 262 32 201 368 15 0 chr9 8056796 8056864 -109805763 + MIR SINE MIR 54 122 -86 24 96 0 0 chr9 8056895 8056968 -109805659 + AT_rich Low_complexity Low_complexity 1 73 0 466 371 0 10 chr9 8056972 8057166 -109805461 - MIR SINE MIR -13 249 58 193 279 29 44 chr9 8057258 8057326 -109805301 + L2 LINE L2 3194 3260 -12 246 213 0 0 chr9 8057911 8057958 -109804669 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 75 0 0 chr9 8057958 8058011 -109804616 + AT_rich Low_complexity Low_complexity 1 53 0 230 288 15 0 chr9 8059284 8059350 -109803277 - MER113 DNA MER1_type? -3 518 452 1698 203 48 6 chr9 8059470 8059805 -109802822 + MLT1A1 LTR MaLR 1 349 -16 215 238 0 0 chr9 8059805 8059847 -109802780 + L2 LINE L2 3228 3269 -3 259 333 26 9 chr9 8060134 8060248 -109802379 - MIR SINE MIR -55 207 92 318 295 109 12 chr9 8060565 8060887 -109801740 - L1MEc LINE L1 -2169 4046 3694 249 303 79 0 chr9 8060918 8060994 -109801633 + L2 LINE L2 3192 3273 -40 209 204 0 20 chr9 8061014 8061063 -109801564 + GA-rich Low_complexity Low_complexity 3 50 0 996 325 88 45 chr9 8061130 8062254 -109800373 - L1MEc LINE L1 -2659 3556 2384 531 220 15 38 chr9 8062451 8062583 -109800044 + FLAM_A SINE Alu 8 136 -6 314 318 136 15 chr9 8062629 8062893 -109799734 - L1MEc LINE L1 -3998 2398 2103 1475 165 44 54 chr9 8063588 8063885 -109798742 - AluJo SINE Alu -13 299 6 234 284 99 45 chr9 8063955 8064198 -109798429 - HAL1 LINE L1 -1151 1356 1101 23 54 0 0 chr9 8064222 8064259 -109798368 + AT_rich Low_complexity Low_complexity 1 37 0 276 310 23 11 chr9 8064994 8065081 -109797546 + MIR SINE MIR 57 144 -64 234 91 0 0 chr9 8066362 8066395 -109796232 + (T)n Simple_repeat Simple_repeat 1 33 0 207 0 0 0 chr9 8066716 8066739 -109795888 + (CA)n Simple_repeat Simple_repeat 2 24 0 438 243 13 185 chr9 8067535 8067835 -109794792 + MIR SINE MIR 4 248 -14 225 178 0 0 chr9 8067980 8068025 -109794602 + (CA)n Simple_repeat Simple_repeat 1 45 0 267 356 30 0 chr9 8069247 8069379 -109793248 + LTR16A LTR ERVL 13 148 -302 253 321 44 50 chr9 8070849 8071070 -109791557 - MIR3 SINE MIR -34 228 14 803 297 38 4 chr9 8071893 8072156 -109790471 + L2 LINE L2 2896 3167 -146 542 286 124 0 chr9 8072177 8072338 -109790289 + MIR SINE MIR 13 193 -69 488 304 0 14 chr9 8072385 8072523 -109790104 + L2 LINE L2 3178 3313 0 2795 163 5 66 chr9 8073743 8074315 -109788312 + MER74A LTR ERVL 1 537 -21 1181 188 39 0 chr9 8074779 8074987 -109787640 + MER58A DNA MER1_type 1 216 -8 2093 113 0 3 chr9 8075365 8075673 -109786954 + AluSq SINE Alu 1 307 0 373 186 134 0 chr9 8075842 8075939 -109786688 + MER20 DNA MER1_type 25 134 -85 6956 155 12 21 chr9 8075948 8077451 -109785176 - Ricksha DNA DNA -13 3238 1711 626 152 16 24 chr9 8077437 8077562 -109785065 - Ricksha DNA DNA -1122 132 9 * 532 224 9 0 chr9 8077581 8077688 -109784939 + MER20 DNA MER1_type 107 214 -5 182 240 135 31 chr9 8077693 8077789 -109784838 + MIR SINE MIR 102 207 -55 21 36 0 0 chr9 8077823 8077851 -109784776 + AT_rich Low_complexity Low_complexity 1 28 0 704 174 52 0 chr9 8078786 8078901 -109783726 - FLAM_A SINE Alu -9 124 4 195 392 13 0 chr9 8081573 8081652 -109780975 + L2 LINE L2 3164 3243 -29 436 266 16 23 chr9 8081813 8081941 -109780686 - MIR SINE MIR -21 241 115 216 202 26 26 chr9 8082024 8082138 -109780489 + (TA)n Simple_repeat Simple_repeat 2 115 0 454 224 0 112 chr9 8082293 8082427 -109780200 - MIR3 SINE MIR -46 162 44 216 217 49 105 chr9 8082617 8082760 -109779867 + L2 LINE L2 2878 3012 -260 525 227 109 0 chr9 8082865 8082975 -109779652 + MER45A DNA AcHobo 57 178 0 243 297 81 0 chr9 8083034 8083108 -109779519 + L2 LINE L2 3136 3215 -57 240 352 16 39 chr9 8083937 8084040 -109778587 - L2 LINE L2 -7 3306 3207 896 223 9 40 chr9 8084040 8084264 -109778363 + MIR SINE MIR 2 218 -44 2121 133 7 0 chr9 8084748 8085057 -109777570 - AluSx SINE Alu 0 312 2 2264 101 0 16 chr9 8085130 8085437 -109777190 - AluSg SINE Alu -8 302 1 2013 137 21 6 chr9 8087120 8087456 -109775171 + L1P4 LINE L1 5393 5733 -432 1463 214 31 26 chr9 8087507 8087891 -109774736 - MER89 LTR ERV1 0 559 174 318 143 32 0 chr9 8087891 8087954 -109774673 - MER89 LTR ERV1 -494 65 1 995 150 56 100 chr9 8087995 8088075 -109774552 + MER33 DNA MER1_type 1 83 -2502 2215 71 0 52 chr9 8088075 8088385 -109774242 + AluY SINE Alu 1 294 -17 995 150 56 100 chr9 8088385 8088643 -109773984 + MER33 DNA MER1_type 83 324 0 413 322 17 0 chr9 8092568 8092683 -109769944 + MIR3 SINE MIR 86 202 -6 28 48 0 0 chr9 8093072 8093114 -109769513 + AT_rich Low_complexity Low_complexity 1 42 0 262 239 103 77 chr9 8094290 8094407 -109768220 - MER20B DNA MER1_type -607 176 57 1991 165 123 8 chr9 8094898 8095280 -109767347 - MSTA LTR MaLR 0 428 3 1648 171 3 58 chr9 8095503 8095681 -109766946 - AluJo SINE Alu -2 310 157 1996 144 17 0 chr9 8095681 8095972 -109766655 - AluSx SINE Alu -16 296 1 1648 171 3 58 chr9 8095972 8096120 -109766507 - AluJo SINE Alu -155 157 2 442 326 47 23 chr9 8096390 8096562 -109766065 - MIR SINE MIR -50 212 37 201 310 42 0 chr9 8096783 8096854 -109765773 - MIR3 SINE MIR -11 197 124 363 277 97 13 chr9 8096855 8097010 -109765617 + MLT1J2 LTR MaLR 1 168 -282 228 86 0 0 chr9 8097031 8097066 -109765561 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 28 29 0 0 chr9 8097150 8097185 -109765442 + AT_rich Low_complexity Low_complexity 1 35 0 820 192 7 0 chr9 8097192 8097338 -109765289 - AluJb SINE Alu -30 282 136 260 243 0 27 chr9 8097352 8097426 -109765201 + MLT1I LTR MaLR 336 407 -2 486 272 97 20 chr9 8098171 8098395 -109764232 + L1M4b LINE L1 11 549 -6306 1121 267 40 14 chr9 8098508 8098928 -109763699 + L1ME1 LINE L1 5731 6161 -5 184 283 321 9 chr9 8099142 8099248 -109763379 - MIR3 SINE MIR -16 192 54 269 294 147 45 chr9 8099826 8100003 -109762624 + MIR SINE MIR 7 201 -61 227 343 95 0 chr9 8100558 8100663 -109761964 + L2 LINE L2 3150 3264 -8 1882 127 25 28 chr9 8102199 8102482 -109760145 - AluY SINE Alu -29 282 1 23 0 0 0 chr9 8104556 8104579 -109758048 + AT_rich Low_complexity Low_complexity 1 23 0 2088 117 7 3 chr9 8104675 8104990 -109757637 - AluSq SINE Alu 0 316 1 22 56 0 0 chr9 8106330 8106366 -109756261 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 167 31 chr9 8106841 8106937 -109755690 - L2 LINE L2 -1 3312 3204 326 367 130 18 chr9 8107590 8107982 -109754645 - L2 LINE L2 0 3272 2837 1238 123 36 5 chr9 8108132 8108351 -109754276 - L1MA8 LINE L1 -5 6286 6061 36705 69 10 8 chr9 8108358 8114453 -109748174 - L1PA3 LINE L1 -3 6152 44 3912 145 9 0 chr9 8114453 8115267 -109747360 - L1MA8 LINE L1 -744 5402 4450 1570 154 0 0 chr9 8115293 8115565 -109747062 - L1MA8 LINE L1 -1800 4346 4075 1142 168 15 0 chr9 8115786 8115989 -109746638 + L1PA15 LINE L1 5939 6144 -21 263 314 128 21 chr9 8116405 8116647 -109745980 - LTR33A LTR ERVL -129 394 127 1064 226 146 45 chr9 8116881 8117258 -109745369 + LTR48 LTR ERV1 1 415 -372 529 153 26 97 chr9 8117261 8117530 -109745097 + MER39 LTR ERV1 544 707 0 232 196 0 0 chr9 8118530 8118576 -109744051 - Charlie8 DNA MER1_type -2162 255 210 225 277 89 50 chr9 8118614 8118715 -109743912 - L2 LINE L2 -283 3030 2926 587 245 0 73 chr9 8118715 8118760 -109743867 - MER5B DNA MER1_type 0 178 131 2564 81 0 0 chr9 8118760 8119069 -109743558 - AluSx SINE Alu -3 309 1 587 245 0 73 chr9 8119069 8119215 -109743412 - MER5B DNA MER1_type -47 131 1 226 287 63 34 chr9 8119798 8120035 -109742592 + L1ME4a LINE L1 5872 6115 -6 282 29 0 0 chr9 8120085 8120120 -109742507 + (TG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr9 8120178 8120202 -109742425 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 283 230 81 23 chr9 8121054 8121141 -109741486 - MIR3 SINE MIR -50 158 67 1545 166 60 21 chr9 8122226 8122539 -109740088 - MER2 DNA MER2_type 0 345 17 2434 127 27 78 chr9 8122539 8122988 -109739639 - MSTB LTR MaLR 0 426 1 1545 166 60 21 chr9 8122988 8123006 -109739621 - MER2 DNA MER2_type -328 17 1 265 308 0 0 chr9 8123435 8123500 -109739127 + L3b LINE CR1 1276 1340 -243 7996 25 2 2 chr9 8123643 8125361 -109737266 - L1PA3 LINE L1 -1 6154 4437 850 9 0 0 chr9 8125361 8125468 -109737159 + L1PA3 LINE L1 4326 4432 -1714 188 245 0 38 chr9 8125684 8125737 -109736890 - L2 LINE L2 0 3313 3263 198 71 0 0 chr9 8126860 8126888 -109735739 + (TA)n Simple_repeat Simple_repeat 2 29 0 258 222 69 0 chr9 8127777 8127849 -109734778 - MIR SINE MIR -88 174 98 7921 130 16 1 chr9 8128109 8129378 -109733249 + HSMAR2 DNA Mariner 5 1292 -10 380 325 80 51 chr9 8129834 8130185 -109732442 + L2 LINE L2 2535 2895 -419 300 369 0 39 chr9 8130348 8130478 -109732149 + L2 LINE L2 3133 3257 -15 452 243 59 64 chr9 8130492 8130556 -109732071 - MIR SINE MIR -3 259 196 2247 192 12 19 chr9 8130556 8130789 -109731838 - MSTB LTR MaLR -2 424 194 1435 234 3 23 chr9 8130789 8131092 -109731535 - AluJb SINE Alu -15 297 1 2247 192 12 19 chr9 8131092 8131285 -109731342 - MSTB LTR MaLR -232 194 1 452 243 59 64 chr9 8131285 8131441 -109731186 - MIR SINE MIR -66 196 40 213 253 220 22 chr9 8132559 8132650 -109729977 + MIR SINE MIR 36 144 -118 820 136 7 50 chr9 8132918 8133058 -109729569 - AluJo SINE Alu -178 134 1 219 242 16 16 chr9 8134024 8134086 -109728541 + L2 LINE L2 3251 3312 -1 755 263 124 0 chr9 8134193 8134410 -109728217 + MIR SINE MIR 14 257 -5 218 281 158 23 chr9 8134484 8134753 -109727874 - L2 LINE L2 0 3272 2928 780 201 36 82 chr9 8134822 8135041 -109727586 - MER20 DNA MER1_type -10 209 1 183 379 81 0 chr9 8136466 8136590 -109726037 + L3b LINE CR1 1377 1510 -73 186 167 0 0 chr9 8137165 8137201 -109725426 + (TG)n Simple_repeat Simple_repeat 2 37 0 317 266 38 0 chr9 8137793 8137872 -109724755 + L2 LINE L2 3190 3271 -1 402 100 0 0 chr9 8138740 8138800 -109723827 + (TG)n Simple_repeat Simple_repeat 2 61 0 1242 218 157 11 chr9 8139646 8140271 -109722356 - LTR50 LTR ERVL 0 795 5 296 396 132 7 chr9 8140677 8140821 -109721806 + MER91A DNA MER1_type 34 195 -1 194 263 70 0 chr9 8140852 8140909 -109721718 + L2 LINE L2 3006 3066 -206 1286 211 34 4 chr9 8141297 8141726 -109720901 + L1MB8 LINE L1 5137 5578 -596 2020 132 140 8 chr9 8141735 8142113 -109720514 - MSTA LTR MaLR 0 428 1 8968 168 19 31 chr9 8142118 8143783 -109718844 - MSTA-int LTR MaLR -6 1645 1 2250 127 99 10 chr9 8143783 8144176 -109718451 - MSTA LTR MaLR 0 428 1 1469 176 35 6 chr9 8144176 8144495 -109718132 + L1MB8 LINE L1 5583 5910 -268 398 145 0 0 chr9 8144497 8144559 -109718068 - MADE1 DNA Mariner -18 62 1 394 228 11 5 chr9 8144559 8144747 -109717880 + L1MB8 LINE L1 5908 6172 -6 400 349 24 8 chr9 8144969 8145095 -109717532 - L2 LINE L2 0 3272 3145 761 326 143 33 chr9 8145144 8145746 -109716881 - L2 LINE L2 -653 2661 1994 241 174 0 0 chr9 8146060 8146106 -109716521 - L1MB1 LINE L1 -1 6167 6122 2801 110 19 14 chr9 8146108 8146536 -109716091 - L1PA16 LINE L1 0 6166 5737 3100 149 5 13 chr9 8146536 8147331 -109715296 + L1PA16 LINE L1 4949 5737 -429 473 162 108 0 chr9 8147329 8147440 -109715187 - L1MB1 LINE L1 -39 6129 6007 * 841 180 19 0 chr9 8147444 8147605 -109715022 - L1MB1 LINE L1 -236 5932 5769 * 24463 63 5 2 chr9 8147604 8151572 -109711055 - L1PA6 LINE L1 0 6154 2175 3852 131 29 3 chr9 8151572 8152191 -109710436 - MER11B LTR ERVK -601 635 1 4825 167 34 5 chr9 8152191 8153697 -109708930 - L1PA14 LINE L1 -332 6480 4935 5285 167 19 10 chr9 8153699 8155265 -109707362 + L1PB1 LINE L1 4573 6143 -8 11262 199 39 32 chr9 8155280 8159502 -109703125 - L1PA14 LINE L1 -1851 4946 728 279 0 0 0 chr9 8159502 8159533 -109703094 + (CA)n Simple_repeat Simple_repeat 1 31 0 11262 199 39 32 chr9 8159533 8160142 -109702485 - L1PA14 LINE L1 -6069 728 125 2294 272 71 28 chr9 8160147 8161486 -109701141 - L1M4 LINE L1 -2478 3668 2273 27 0 0 0 chr9 8161568 8161595 -109701032 + AT_rich Low_complexity Low_complexity 1 27 0 203 0 37 0 chr9 8162071 8162098 -109700529 + (TTA)n Simple_repeat Simple_repeat 3 30 0 278 267 139 10 chr9 8163395 8163496 -109699131 + LTR16A LTR ERVL 337 450 0 255 176 68 27 chr9 8163497 8163571 -109699056 + MLT1K LTR MaLR 496 572 -16 832 166 21 100 chr9 8163848 8164089 -109698538 - L1MA4A LINE L1 -114 6189 5968 * 1627 51 0 0 chr9 8164066 8164281 -109698346 - L1P2 LINE L1 -644 5510 5296 * 1652 121 18 33 chr9 8164272 8164544 -109698083 + L1M1 LINE L1 5465 5732 -571 * 12292 218 55 22 chr9 8164542 8166596 -109696031 - L1 LINE L1 -842 6006 4023 234 0 0 0 chr9 8166596 8166622 -109696005 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 12292 218 55 22 chr9 8166622 8168505 -109694122 - L1 LINE L1 -2825 4023 1908 3659 202 61 13 chr9 8168513 8169278 -109693349 - L1 LINE L1 -6067 782 2 388 222 5 62 chr9 8170051 8170160 -109692467 - MLT2E LTR ERVL -336 185 36 24 0 0 0 chr9 8170427 8170451 -109692176 + AT_rich Low_complexity Low_complexity 1 24 0 201 268 0 36 chr9 8171353 8171409 -109691218 + GA-rich Low_complexity Low_complexity 4 57 0 437 315 56 29 chr9 8172134 8172687 -109689940 - L1MC4a LINE L1 -846 5445 5297 286 245 170 34 chr9 8172774 8173039 -109689588 - L1MC4a LINE L1 -1773 4373 4073 2429 77 3 3 chr9 8173105 8173416 -109689211 - AluY SINE Alu 0 311 1 321 306 32 64 chr9 8173420 8173639 -109688988 - L1MC4a LINE L1 -2117 4029 3818 723 119 24 8 chr9 8173663 8173789 -109688838 - L1MA5A LINE L1 -4 6293 6166 2716 125 26 9 chr9 8173818 8174273 -109688354 - L1PA16 LINE L1 -9 6157 5695 5483 245 66 25 chr9 8174275 8175040 -109687587 - L1M4 LINE L1 -758 5388 4656 1702 187 0 22 chr9 8175040 8175355 -109687272 - AluJo SINE Alu 0 312 5 5483 245 66 25 chr9 8175355 8176862 -109685765 - L1M4 LINE L1 -1490 4656 2762 287 266 64 0 chr9 8177065 8177159 -109685468 - L1PA12 LINE L1 -5398 2183 2084 914 343 20 51 chr9 8177258 8177891 -109684736 - L1PA12 LINE L1 -6173 1401 788 227 272 52 81 chr9 8177920 8178093 -109684534 - L1MC4a LINE L1 -2342 3804 3637 253 328 55 55 chr9 8178137 8178320 -109684307 - MER5A DNA MER1_type -2 187 5 1504 319 83 25 chr9 8178390 8179207 -109683420 + HAL1 LINE L1 10 874 -1633 185 62 0 31 chr9 8179216 8179248 -109683379 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 3415 25 0 0 chr9 8179248 8179643 -109682984 - L1PA4 LINE L1 -24 6131 5737 363 0 0 0 chr9 8179640 8179680 -109682947 + L1P2 LINE L1 5618 5657 -497 * 461 238 115 73 chr9 8179676 8180251 -109682376 + HAL1 LINE L1 863 1461 -1046 456 318 40 0 chr9 8180251 8180399 -109682228 + L2 LINE L2 3160 3313 0 381 316 36 14 chr9 8180590 8180729 -109681898 - L3 LINE CR1 -8 1569 1428 2030 130 0 0 chr9 8181203 8181480 -109681147 - AluSq SINE Alu -15 298 22 339 270 132 7 chr9 8181743 8181895 -109680732 + MIR3 SINE MIR 31 201 -7 1997 112 13 16 chr9 8181941 8182244 -109680383 - AluSq SINE Alu -11 302 1 293 306 50 16 chr9 8182643 8182764 -109679863 + MIR3 SINE MIR 8 132 -76 200 231 19 19 chr9 8182921 8182973 -109679654 - L2 LINE L2 -8 3305 3254 415 232 141 68 chr9 8183491 8183668 -109678959 - MIR SINE MIR -24 238 49 4627 88 8 8 chr9 8183921 8184571 -109678056 + L1PA10 LINE L1 5519 6168 0 302 186 253 98 chr9 8184609 8184803 -109677824 + MLT1H LTR MaLR 1 224 -325 2388 151 45 0 chr9 8184842 8185239 -109677388 - MSTB LTR MaLR -11 415 1 35615 93 5 5 chr9 8185448 8191594 -109671033 - L1PA6 LINE L1 -4 6150 11 1986 111 0 14 chr9 8192561 8192840 -109669787 + AluSc SINE Alu 1 275 -34 756 32 0 0 chr9 8192840 8192935 -109669692 + (TC)n Simple_repeat Simple_repeat 2 96 0 2485 56 0 3 chr9 8193023 8193328 -109669299 + AluY SINE Alu 1 304 -7 1745 44 0 31 chr9 8193498 8193726 -109668901 + L1PA5 LINE L1 5928 6148 -6 203 211 0 0 chr9 8194249 8194287 -109668340 - MIR SINE MIR -72 136 99 264 170 0 0 chr9 8194394 8194447 -109668180 + (TATG)n Simple_repeat Simple_repeat 2 54 0 353 292 175 38 chr9 8194787 8195181 -109667446 + MLT1L LTR MaLR 166 613 -2 216 261 0 0 chr9 8195378 8195424 -109667203 - MER5A DNA MER1_type -128 61 16 234 174 0 0 chr9 8195551 8195597 -109667030 + (ATG)n Simple_repeat Simple_repeat 3 48 0 788 277 38 34 chr9 8195626 8195778 -109666849 + MIR SINE MIR 7 162 -100 1899 148 49 25 chr9 8195778 8196144 -109666483 + THE1C LTR MaLR 1 375 0 788 277 38 34 chr9 8196144 8196226 -109666401 + MIR SINE MIR 162 242 -20 323 260 79 0 chr9 8198112 8198239 -109664388 - L1ME4a LINE L1 -50 6071 5935 350 299 216 0 chr9 8199836 8199970 -109662657 - MER5A DNA MER1_type -2 187 25 2750 20 0 0 chr9 8201134 8201437 -109661190 + AluY SINE Alu 1 303 -8 595 324 29 0 chr9 8202854 8203024 -109659603 + MIR3 SINE MIR 19 193 -15 10717 199 26 44 chr9 8203522 8203978 -109658649 - L1PA16 LINE L1 0 6166 5703 2584 108 14 3 chr9 8203978 8204348 -109658279 - THE1C LTR MaLR -1 374 1 10717 199 26 44 chr9 8204348 8204762 -109657865 - L1PA16 LINE L1 -463 5703 5283 3780 94 14 38 chr9 8204762 8205387 -109657240 - L1MA2 LINE L1 0 6304 5695 10717 199 26 44 chr9 8205387 8206235 -109656392 - L1PA16 LINE L1 -883 5283 4421 2316 98 0 16 chr9 8206235 8206551 -109656076 - AluY SINE Alu 0 311 1 10717 199 26 44 chr9 8206551 8208711 -109653916 - L1PA16 LINE L1 -1745 4421 2329 20891 48 4 1 chr9 8208711 8212133 -109650494 - L1PA5 LINE L1 0 6154 2725 10717 199 26 44 chr9 8212133 8212177 -109650450 - L1PA16 LINE L1 -3837 2329 2286 209 179 39 77 chr9 8212248 8212326 -109650301 + A-rich Low_complexity Low_complexity 5 79 0 516 268 0 9 chr9 8214204 8214316 -109648311 + MIR SINE MIR 41 151 -111 210 71 0 0 chr9 8214886 8214914 -109647713 + (TA)n Simple_repeat Simple_repeat 1 28 0 301 263 131 0 chr9 8214917 8215016 -109647611 - MIR SINE MIR -25 237 126 377 265 103 0 chr9 8215352 8215469 -109647158 + Zaphod DNA AcHobo 3900 4028 -3 516 271 17 0 chr9 8215470 8215588 -109647039 - MIR SINE MIR -137 125 6 336 219 93 35 chr9 8215947 8216132 -109646495 + MIR SINE MIR 10 248 -14 580 266 83 16 chr9 8216185 8216377 -109646250 - MIR SINE MIR -1 261 57 1041 243 31 20 chr9 8216383 8216704 -109645923 - MER58B DNA MER1_type 0 341 1 1502 214 57 10 chr9 8217823 8218230 -109644397 + LTR37A LTR ERV1 1 426 0 245 325 105 26 chr9 8219784 8219898 -109642729 - L2 LINE L2 -12 3260 3138 625 355 132 20 chr9 8220450 8221307 -109641320 - L2 LINE L2 -825 2489 1537 417 225 28 84 chr9 8222925 8223067 -109639560 + MIR SINE MIR 8 141 -121 181 246 31 77 chr9 8223249 8223314 -109639313 - L2 LINE L2 -45 3268 3207 783 290 75 36 chr9 8223336 8223695 -109638932 + LTR33 LTR ERVL 149 521 0 397 339 48 16 chr9 8223834 8224020 -109638607 - MIR SINE MIR -70 192 1 493 276 6 41 chr9 8225098 8225268 -109637359 + MIR SINE MIR 29 191 -69 197 367 41 31 chr9 8227028 8227126 -109635501 - L2 LINE L2 -32 3240 3142 1140 189 42 0 chr9 8227394 8227654 -109634973 + L1MA4 LINE L1 6018 6288 -12 767 297 64 55 chr9 8227930 8228368 -109634259 - L1MEd LINE L1 -5613 506 65 503 329 70 51 chr9 8228526 8228882 -109633745 + L2 LINE L2 2939 3301 -12 537 258 22 39 chr9 8229482 8229660 -109632967 + MER5B DNA MER1_type 2 176 -2 291 337 0 0 chr9 8229737 8229829 -109632798 + L2 LINE L2 3180 3271 -1 21 36 0 0 chr9 8230715 8230743 -109631884 + AT_rich Low_complexity Low_complexity 1 28 0 369 43 0 0 chr9 8230949 8230996 -109631631 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 5100 171 35 24 chr9 8232462 8233836 -109628791 - L1MA9 LINE L1 0 6312 4927 2742 136 28 29 chr9 8233826 8234457 -109628170 - L1P4 LINE L1 -425 5740 5113 * 1154 193 75 55 chr9 8234456 8234908 -109627719 - L1MA9 LINE L1 -2757 3389 2929 * 859 254 39 21 chr9 8234959 8235238 -109627389 + L1MA9 LINE L1 5987 6270 -42 4029 146 84 40 chr9 8235620 8236509 -109626118 - L1PB4 LINE L1 0 6156 5229 6154 147 17 4 chr9 8236509 8237527 -109625100 + Ricksha_c DNA DNA 906 1936 -110 336 282 0 48 chr9 8237654 8237692 -109624935 + L1MC4 LINE L1 6608 6646 -1396 333 0 0 0 chr9 8237692 8237729 -109624898 + (TC)n Simple_repeat Simple_repeat 2 38 0 369 321 0 0 chr9 8237729 8237813 -109624814 - L1MC4 LINE L1 -1341 6701 6618 21 36 0 0 chr9 8237931 8237959 -109624668 + AT_rich Low_complexity Low_complexity 1 28 0 2025 124 0 7 chr9 8238062 8238360 -109624267 + AluSx SINE Alu 1 296 -16 43 56 0 0 chr9 8238498 8238569 -109624058 + AT_rich Low_complexity Low_complexity 1 71 0 1783 117 8 4 chr9 8240246 8240511 -109622116 - AluSc SINE Alu -9 300 35 1100 266 100 35 chr9 8240642 8241154 -109621473 - MLT1H LTR MaLR 0 549 5 584 276 136 0 chr9 8241278 8241499 -109621128 + MIR SINE MIR 12 262 0 324 266 120 20 chr9 8242655 8242789 -109619838 - MIR SINE MIR -62 146 38 279 0 0 0 chr9 8243000 8243031 -109619596 + (CA)n Simple_repeat Simple_repeat 1 31 0 1997 94 59 0 chr9 8244235 8244521 -109618106 - AluSg SINE Alu -5 305 3 386 304 92 16 chr9 8245430 8245614 -109617013 + MIR SINE MIR 54 251 -11 272 323 51 109 chr9 8246535 8246866 -109615761 - L2 LINE L2 0 3272 2961 227 323 240 15 chr9 8247144 8247481 -109615146 - L2 LINE L2 -925 2389 1977 753 272 109 32 chr9 8248154 8248503 -109614124 - MLT1H LTR MaLR -147 408 40 305 277 0 0 chr9 8248583 8248648 -109613979 + MIR SINE MIR 3 67 -195 193 266 16 47 chr9 8248704 8248768 -109613859 + MIR SINE MIR 201 262 0 501 242 99 6 chr9 8249020 8249181 -109613446 - L1ME LINE L1 -439 5682 5507 483 18 0 0 chr9 8250993 8251049 -109611578 + (TA)n Simple_repeat Simple_repeat 2 57 0 2020 186 21 8 chr9 8251127 8251508 -109611119 + MLT1B LTR MaLR 3 388 -2 24 32 0 0 chr9 8251570 8251601 -109611026 + AT_rich Low_complexity Low_complexity 1 31 0 287 210 32 0 chr9 8251757 8251819 -109610808 - MLT1I LTR MaLR 0 409 346 497 292 14 14 chr9 8252110 8252254 -109610373 - MLT1I LTR MaLR -207 202 59 1982 309 16 48 chr9 8253125 8253872 -109608755 + L1PA15 LINE L1 1 723 -6064 13995 229 27 18 chr9 8253987 8256492 -109606135 + L1PA15 LINE L1 1324 3804 -3012 2479 123 13 11 chr9 8256492 8256866 -109605761 + THE1C LTR MaLR 1 375 0 13995 229 27 18 chr9 8256866 8259813 -109602814 + L1PA15 LINE L1 3804 6815 -1 216 86 0 0 chr9 8260955 8260990 -109601637 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr9 8261059 8261080 -109601547 + AT_rich Low_complexity Low_complexity 1 21 0 250 200 0 50 chr9 8261556 8261616 -109601011 + L2 LINE L2 3255 3311 -2 22 56 0 0 chr9 8261950 8261986 -109600641 + AT_rich Low_complexity Low_complexity 1 36 0 264 222 0 0 chr9 8262575 8262647 -109599980 + (TG)n Simple_repeat Simple_repeat 1 72 0 224 275 62 118 chr9 8262968 8263167 -109599460 - MIR3 SINE MIR -5 203 15 333 0 0 0 chr9 8263167 8263204 -109599423 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 224 275 62 118 chr9 8263204 8263215 -109599412 - MIR3 SINE MIR -193 15 5 340 230 190 10 chr9 8263341 8263441 -109599186 - L2 LINE L2 -1 3312 3195 1996 134 0 0 chr9 8265207 8265513 -109597114 - AluSc SINE Alu -3 306 1 501 270 122 26 chr9 8265605 8265997 -109596630 - MLT1H1 LTR MaLR 0 555 64 549 328 6 22 chr9 8267239 8267419 -109595208 - MIR SINE MIR -32 230 54 1775 229 28 21 chr9 8267459 8267892 -109594735 - L1ME1 LINE L1 -9 6157 5722 2408 67 0 0 chr9 8268112 8268412 -109594215 - AluY SINE Alu -11 300 1 191 265 61 0 chr9 8268436 8268485 -109594142 + L2 LINE L2 3221 3272 0 409 326 12 22 chr9 8269049 8269229 -109593398 + MIR SINE MIR 30 206 -41 2267 81 7 3 chr9 8270233 8270542 -109592085 + AluY SINE Alu 1 310 -1 341 260 81 18 chr9 8273753 8273934 -109588693 + L1ME LINE L1 515 750 -5384 276 279 93 8 chr9 8274115 8274244 -109588383 + L1ME LINE L1 267 406 -5664 625 260 47 30 chr9 8274367 8274792 -109587835 + L1ME LINE L1 463 900 -5170 * 3734 236 62 19 chr9 8274769 8275612 -109587015 + L1ME LINE L1 2549 3458 -2622 1932 134 0 0 chr9 8275612 8275902 -109586725 - AluSx SINE Alu -20 292 3 3734 236 62 19 chr9 8275902 8276245 -109586382 + L1ME LINE L1 3458 3785 -2295 915 159 19 0 chr9 8278007 8278164 -109584463 - AluJb SINE Alu -15 297 138 653 270 61 22 chr9 8279472 8279702 -109582925 + MIR SINE MIR 8 246 -16 180 158 40 13 chr9 8281434 8281510 -109581117 + (TCTCTG)n Simple_repeat Simple_repeat 3 80 0 251 181 36 24 chr9 8281527 8281693 -109580934 + (TCTCTG)n Simple_repeat Simple_repeat 4 171 0 435 156 21 54 chr9 8281710 8281896 -109580731 + (TCTCTG)n Simple_repeat Simple_repeat 1 180 0 996 145 0 12 chr9 8282362 8282534 -109580093 - AluSp SINE Alu -10 303 134 2260 95 0 3 chr9 8282534 8282838 -109579789 - AluY SINE Alu -8 303 1 262 282 51 0 chr9 8283758 8283836 -109578791 + MER5A DNA MER1_type 4 85 -104 232 277 9 9 chr9 8283914 8284026 -109578601 + (CA)n Simple_repeat Simple_repeat 2 113 0 1284 189 0 26 chr9 8284343 8284633 -109577994 + AluJo SINE Alu 25 307 0 246 302 148 16 chr9 8284771 8284960 -109577667 - MIR SINE MIR -26 236 23 2633 107 8 8 chr9 8286546 8286919 -109575708 - THE1C LTR MaLR 0 375 3 279 311 47 0 chr9 8288141 8288255 -109574372 + MIR SINE MIR 30 147 -70 247 216 98 49 chr9 8288831 8288933 -109573694 - LTR16C LTR ERVL 0 491 385 208 195 0 46 chr9 8289625 8289712 -109572915 + (CACCC)n Simple_repeat Simple_repeat 3 85 0 2098 127 0 10 chr9 8290803 8291111 -109571516 - AluSx SINE Alu -6 306 2 1273 263 54 28 chr9 8291668 8292129 -109570498 - MLT1E2 LTR MaLR -7 619 147 200 271 83 52 chr9 8294958 8295054 -109567573 + MIR3 SINE MIR 78 176 -32 367 293 18 42 chr9 8296491 8296658 -109565969 - MER58B DNA MER1_type -2 339 177 1073 175 60 19 chr9 8296750 8297019 -109565608 - THE1C LTR MaLR 0 375 96 2119 59 0 0 chr9 8297122 8297378 -109565249 - L1PA5 LINE L1 -1 6153 5898 197 190 103 17 chr9 8298091 8298149 -109564478 - L2 LINE L2 -23 3249 3187 * 297 279 58 0 chr9 8298129 8298233 -109564394 - MIR SINE MIR -124 138 29 216 184 0 0 chr9 8298922 8298960 -109563667 + (CA)n Simple_repeat Simple_repeat 1 38 0 282 243 0 0 chr9 8299092 8299166 -109563461 + G-rich Low_complexity Low_complexity 1 74 0 633 276 92 0 chr9 8301510 8301749 -109560878 - Charlie5 DNA MER1_type 0 2624 2364 256 288 14 0 chr9 8301736 8301809 -109560818 - Charlie5 DNA MER1_type -2536 76 3 * 215 286 83 7 chr9 8302335 8302429 -109560198 + MIR SINE MIR 45 144 -64 564 214 17 0 chr9 8302637 8302810 -109559817 + CT-rich Low_complexity Low_complexity 1 176 0 1480 94 44 5 chr9 8303696 8303899 -109558728 + AluSg/x SINE Alu 83 293 -17 259 301 54 0 chr9 8304645 8304738 -109557889 + MIR3 SINE MIR 92 189 -19 298 224 0 0 chr9 8304871 8304929 -109557698 + L2 LINE L2 3215 3272 0 1696 149 55 3 chr9 8304999 8305288 -109557339 - AluSx SINE Alu -8 304 1 421 345 40 0 chr9 8306231 8306405 -109556222 + MIR SINE MIR 50 230 -32 1165 252 55 3 chr9 8307000 8307325 -109555302 + MER7A DNA MER2_type 1 340 -6 298 283 11 22 chr9 8307711 8307803 -109554824 + MIR SINE MIR 87 177 -85 188 333 0 0 chr9 8307859 8307907 -109554720 - MIR SINE MIR -106 156 109 233 209 75 0 chr9 8308984 8309051 -109553576 - MLT1J LTR MaLR -341 170 99 181 296 28 14 chr9 8310832 8310903 -109551724 + L2 LINE L2 2994 3065 -248 2352 60 0 0 chr9 8311137 8311448 -109551179 - AluY SINE Alu 0 311 1 817 164 0 29 chr9 8311448 8311588 -109551039 - AluJo SINE Alu -176 136 1 1912 97 0 0 chr9 8311637 8311884 -109550743 - AluSx SINE Alu -19 293 47 186 200 20 20 chr9 8312512 8312562 -109550065 - MIR SINE MIR -57 151 102 390 303 70 32 chr9 8312962 8313147 -109549480 + MIR SINE MIR 41 232 -30 401 330 62 17 chr9 8313413 8313704 -109548923 - L1MEc LINE L1 -6028 368 65 627 253 220 10 chr9 8315571 8315930 -109546697 - MLT1C LTR MaLR -47 420 1 194 126 11 69 chr9 8316639 8316726 -109545901 + (GGA)n Simple_repeat Simple_repeat 2 83 0 351 297 109 0 chr9 8318908 8319046 -109543581 - MIR SINE MIR -19 243 91 23 0 0 0 chr9 8320741 8320764 -109541863 + GC_rich Low_complexity Low_complexity 1 23 0 326 251 115 20 chr9 8322276 8322394 -109540233 + MIR SINE MIR 33 162 -46 2122 78 58 3 chr9 8322548 8322843 -109539784 - AluY SINE Alu 0 311 1 2299 258 92 8 chr9 8323734 8324486 -109538141 - MER21B LTR ERV1 0 863 49 276 294 0 0 chr9 8324497 8324565 -109538062 - MER21B LTR ERV1 -777 86 19 285 244 37 0 chr9 8324678 8324760 -109537867 + MLT1E2 LTR MaLR 124 208 -418 248 259 0 0 chr9 8325082 8325140 -109537487 + MARNA DNA Mariner 436 493 -93 1883 184 47 19 chr9 8326183 8326548 -109536079 + THE1C LTR MaLR 1 375 0 495 244 154 5 chr9 8327261 8327462 -109535165 - MER113 DNA MER1_type? -230 291 61 279 363 9 9 chr9 8327489 8327602 -109535025 - L3 LINE CR1 -48 1529 1417 392 330 84 0 chr9 8328318 8328497 -109534130 - MIR SINE MIR -26 236 43 22 0 0 0 chr9 8329180 8329202 -109533425 + GC_rich Low_complexity Low_complexity 1 22 0 206 295 33 0 chr9 8330833 8330894 -109531733 - MER91B DNA MER1_type -127 63 1 569 209 157 5 chr9 8330901 8331111 -109531516 - MLT1D LTR MaLR -157 348 107 372 277 108 19 chr9 8331899 8332112 -109530515 - LTR16A LTR ERVL -17 433 202 255 168 76 0 chr9 8332186 8332305 -109530322 + (CAGGA)n Simple_repeat Simple_repeat 3 130 0 242 272 48 24 chr9 8332305 8332430 -109530197 + (CGGGA)n Simple_repeat Simple_repeat 3 130 0 1732 231 86 25 chr9 8335834 8336324 -109526303 - MLT2B1 LTR ERVL 0 520 1 2659 104 8 29 chr9 8336896 8337279 -109525348 + THE1C LTR MaLR 1 375 0 441 104 42 52 chr9 8339014 8339110 -109523517 - L1MA8 LINE L1 -1 6290 6196 234 245 28 56 chr9 8342916 8343059 -109519568 + GA-rich Low_complexity Low_complexity 3 141 0 190 222 0 37 chr9 8345183 8345237 -109517390 - MIR SINE MIR -64 144 93 201 244 0 0 chr9 8345412 8345457 -109517170 + (TGAG)n Simple_repeat Simple_repeat 4 48 0 230 198 19 36 chr9 8346468 8346537 -109516090 - MIR SINE MIR -61 147 98 3164 200 61 7 chr9 8351139 8351898 -109510729 + L1 LINE L1 3240 4039 -2107 259 119 0 0 chr9 8351901 8351943 -109510684 + L1 LINE L1 3998 4039 -2107 259 119 0 0 chr9 8351946 8351988 -109510639 + L1 LINE L1 3998 4039 -2107 259 119 0 0 chr9 8351991 8352033 -109510594 + L1 LINE L1 3998 4039 -2107 243 143 0 0 chr9 8352084 8352126 -109510501 + L1 LINE L1 3998 4039 -2107 1697 160 53 53 chr9 8352129 8352504 -109510123 + L1 LINE L1 3998 4372 -1774 2207 122 7 0 chr9 8352505 8352799 -109509828 + AluSq SINE Alu 1 296 -17 381 259 29 43 chr9 8352803 8352942 -109509685 - L2 LINE L2 -256 3057 2921 5019 286 39 17 chr9 8353067 8355166 -109507461 - L1P LINE L1 -2537 3609 1466 430 335 70 44 chr9 8355655 8355998 -109506629 + MLT1J2 LTR MaLR 99 450 0 289 283 10 10 chr9 8356400 8356427 -109506200 + L3 LINE CR1 647 673 -904 2543 196 21 44 chr9 8356427 8356994 -109505633 - MLT2B3 LTR ERVL 0 554 1 289 283 10 10 chr9 8356994 8357065 -109505562 + L3 LINE CR1 672 745 -832 2043 118 48 3 chr9 8357421 8357710 -109504917 - AluSc SINE Alu -7 302 1 207 139 23 23 chr9 8357869 8357912 -109504715 + A-rich Low_complexity Low_complexity 2 44 0 229 373 117 12 chr9 8358199 8358446 -109504181 + L3 LINE CR1 1251 1523 -54 1860 191 0 20 chr9 8358463 8358813 -109503814 + MLT1A1 LTR MaLR 21 363 -2 222 217 29 43 chr9 8358932 8359001 -109503626 + CT-rich Low_complexity Low_complexity 4 71 0 337 393 17 6 chr9 8359001 8359179 -109503448 - L2 LINE L2 -1 3312 3133 360 246 129 23 chr9 8359727 8359947 -109502680 - MLT1K LTR MaLR -2 613 360 602 224 76 59 chr9 8359968 8360205 -109502422 - MIR SINE MIR -14 248 8 207 345 154 34 chr9 8362341 8362587 -109500040 + L2 LINE L2 1521 1736 -1578 1183 193 28 0 chr9 8362587 8362799 -109499828 - MER20 DNA MER1_type -1 218 1 207 345 154 34 chr9 8362799 8363532 -109499095 + L2 LINE L2 1736 2618 -696 1019 247 17 0 chr9 8364151 8364390 -109498237 - MIR SINE MIR 0 262 20 23 33 0 0 chr9 8364882 8364912 -109497715 + AT_rich Low_complexity Low_complexity 1 30 0 836 84 0 0 chr9 8365144 8365251 -109497376 + AluY SINE Alu 199 305 -6 352 234 117 7 chr9 8365292 8365437 -109497190 + L1ME4a LINE L1 5961 6121 0 523 255 50 32 chr9 8365589 8365787 -109496840 + MIR SINE MIR 18 220 -42 188 346 90 32 chr9 8366323 8366702 -109495925 - L2 LINE L2 -201 3071 2670 446 311 28 17 chr9 8366832 8367012 -109495615 - MIR SINE MIR 0 262 81 497 173 0 10 chr9 8367408 8367512 -109495115 + GA-rich Low_complexity Low_complexity 2 104 0 297 128 0 0 chr9 8367619 8367666 -109494961 + (T)n Simple_repeat Simple_repeat 1 47 0 244 247 53 94 chr9 8369391 8369561 -109493066 + LTR67 LTR ERVL 381 543 -14 214 239 15 15 chr9 8369667 8369734 -109492893 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 179 0 0 chr9 8369851 8369890 -109492737 + T-rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr9 8370376 8370401 -109492226 + AT_rich Low_complexity Low_complexity 1 25 0 342 263 175 0 chr9 8370619 8370756 -109491871 - MIR SINE MIR -2 260 100 205 158 26 0 chr9 8371489 8371527 -109491100 + L2 LINE L2 3264 3302 -11 881 231 54 0 chr9 8374001 8374187 -109488440 + Tigger7 DNA MER2_type 7 202 -2285 717 278 27 0 chr9 8374402 8374625 -109488002 + Tigger7 DNA MER2_type 191 419 -314 627 149 90 70 chr9 8375384 8375585 -109487042 - MLT1C LTR MaLR -231 236 32 248 258 0 0 chr9 8376516 8376578 -109486049 - MER2 DNA MER2_type -1 344 283 239 290 0 0 chr9 8376554 8376623 -109486004 - MER8 DNA MER2_type -60 179 111 * 426 242 121 0 chr9 8376736 8376885 -109485742 + MLT1F1 LTR MaLR 1 167 -223 480 264 142 44 chr9 8377715 8378010 -109484617 + MLT1F1 LTR MaLR 244 567 0 651 199 20 5 chr9 8378398 8378563 -109484064 - MLT1A1 LTR MaLR -175 190 19 276 207 198 0 chr9 8378890 8379001 -109483626 + MLT1K LTR MaLR 431 563 -25 737 279 63 11 chr9 8380131 8380608 -109482019 - MER77 LTR ERV1 -4 601 58 234 176 0 39 chr9 8382349 8382400 -109480227 - L2 LINE L2 -5 3267 3219 2206 246 46 26 chr9 8383407 8383539 -109479088 + MER67C LTR ERV1 1 129 -581 2228 96 13 3 chr9 8383539 8383841 -109478786 - AluSc SINE Alu -4 305 1 2206 246 46 26 chr9 8383841 8384404 -109478223 + MER67C LTR ERV1 129 710 0 2166 101 3 3 chr9 8385010 8385296 -109477331 + AluSg1 SINE Alu 1 286 -23 2068 111 47 65 chr9 8385475 8385694 -109476933 + MER51A LTR ERV1 1 222 -412 238 67 44 0 chr9 8385694 8385739 -109476888 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 2130 125 0 20 chr9 8385742 8386046 -109476581 - AluSx SINE Alu -14 298 1 2068 111 47 65 chr9 8386046 8386372 -109476255 + MER51A LTR ERV1 224 634 0 2348 236 51 43 chr9 8386763 8387515 -109475112 - L1M4 LINE L1 -1778 4368 3608 1366 171 98 29 chr9 8387515 8387790 -109474837 - AluJb SINE Alu -18 294 1 2348 236 51 43 chr9 8387790 8387801 -109474826 - L1M4 LINE L1 -2538 3608 3599 701 244 80 20 chr9 8387796 8387997 -109474630 - L1MD2 LINE L1 -16 6343 6131 * 255 197 237 0 chr9 8388239 8388315 -109474312 - L1MD2 LINE L1 -543 5699 5606 453 247 20 27 chr9 8388362 8388508 -109474119 - L1M4 LINE L1 -2587 3559 3415 257 304 47 70 chr9 8388743 8389000 -109473627 + MLT1-int LTR MaLR 1114 1364 -7 5768 18 0 0 chr9 8389206 8389883 -109472744 - L1PA3 LINE L1 -16 6139 5463 * 7184 36 18 0 chr9 8389880 8390863 -109471764 + L1PA4 LINE L1 5149 6147 -8 2276 67 7 24 chr9 8391003 8391301 -109471326 + AluY SINE Alu 1 293 -18 201 74 0 0 chr9 8391365 8391392 -109471235 + (TA)n Simple_repeat Simple_repeat 1 27 0 232 276 52 22 chr9 8391470 8391604 -109471023 - L1MC/D LINE L1 -1930 5878 5741 5488 72 3 0 chr9 8391760 8392468 -109470159 - L1PA7 LINE L1 -3 6151 5442 4834 156 41 1 chr9 8393171 8394172 -109468455 - L1PA16 LINE L1 -9 6157 5116 180 0 0 0 chr9 8394374 8394394 -109468233 + (T)n Simple_repeat Simple_repeat 1 20 0 369 316 20 94 chr9 8395554 8395798 -109466829 - L2 LINE L2 -3 3269 3044 421 262 121 7 chr9 8397201 8397342 -109465285 + MER5A DNA MER1_type 33 189 0 1999 133 0 3 chr9 8397843 8398129 -109464498 - AluJb SINE Alu -19 293 9 242 359 23 53 chr9 8400112 8400243 -109462384 + MIR SINE MIR 19 145 -63 191 326 102 0 chr9 8400445 8400543 -109462084 + MIR SINE MIR 152 259 -3 1788 77 151 4 chr9 8402037 8402296 -109460331 - AluY SINE Alu -3 298 2 301 257 38 0 chr9 8402612 8402717 -109459910 + MER103 DNA DNA 1 109 -57 23 0 0 0 chr9 8404190 8404213 -109458414 + AT_rich Low_complexity Low_complexity 1 23 0 295 284 40 14 chr9 8406333 8406407 -109456220 + MIR SINE MIR 32 107 -155 254 308 67 29 chr9 8407072 8407176 -109455451 - L2 LINE L2 -24 3289 3182 707 309 114 63 chr9 8408462 8409423 -109453204 + L2 LINE L2 2297 3313 0 2024 149 0 10 chr9 8409985 8410293 -109452334 - AluSx SINE Alu -3 309 5 24 0 0 0 chr9 8410507 8410531 -109452096 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr9 8410840 8410871 -109451756 + AT_rich Low_complexity Low_complexity 1 31 0 1369 189 70 83 chr9 8411262 8411744 -109450883 - LTR8 LTR ERV1 -215 476 1 2112 111 10 0 chr9 8411830 8412127 -109450500 - AluSq SINE Alu -12 301 2 1026 149 28 11 chr9 8413128 8413309 -109449318 + MER5A DNA MER1_type 6 189 0 468 147 138 0 chr9 8413364 8413473 -109449154 + MER53 DNA DNA 3 126 -63 1865 153 73 14 chr9 8415372 8415726 -109446901 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr9 8418433 8418455 -109444172 + AT_rich Low_complexity Low_complexity 1 22 0 5767 51 2 8 chr9 8418559 8419388 -109443239 + L1P LINE L1 2 953 -5193 240 267 120 0 chr9 8419514 8419589 -109443038 + MLT1J LTR MaLR 286 369 -142 360 350 87 15 chr9 8419709 8419915 -109442712 - MIR SINE MIR -41 221 1 519 294 120 45 chr9 8420773 8421174 -109441453 - MLT1H LTR MaLR 0 549 119 1492 312 57 40 chr9 8421266 8421972 -109440655 + L3 LINE CR1 761 1478 -99 182 176 0 0 chr9 8421993 8422027 -109440600 + MER5B DNA MER1_type 1 34 -144 327 49 0 0 chr9 8422239 8422280 -109440347 + (CA)n Simple_repeat Simple_repeat 2 42 0 181 267 109 30 chr9 8422333 8422434 -109440193 + L3 LINE CR1 1218 1326 -251 33 80 0 0 chr9 8423129 8423204 -109439423 + AT_rich Low_complexity Low_complexity 1 75 0 185 283 43 0 chr9 8423413 8423459 -109439168 + L2 LINE L2 1835 1882 -1432 210 241 60 60 chr9 8424353 8424436 -109438191 - MIR SINE MIR -56 206 124 1481 162 19 4 chr9 8424442 8424708 -109437919 + MLT1A1 LTR MaLR 1 270 -95 1157 170 75 0 chr9 8424848 8425089 -109437538 + L1MC3 LINE L1 7494 7752 -33 3203 266 44 20 chr9 8426127 8427544 -109435083 - L1M4 LINE L1 -1483 4899 3449 4040 168 29 20 chr9 8427721 8428069 -109434558 - L1MB5 LINE L1 0 6174 5830 1887 150 0 32 chr9 8428069 8428383 -109434244 - AluJb SINE Alu -8 304 1 4040 168 29 20 chr9 8428383 8428876 -109433751 - L1MB5 LINE L1 -344 5830 5326 1751 168 31 17 chr9 8428889 8429181 -109433446 - AluJb SINE Alu -16 296 1 1890 167 0 16 chr9 8429187 8429499 -109433128 - AluJo SINE Alu -5 307 1 1658 196 28 0 chr9 8429504 8429790 -109432837 - AluJb SINE Alu -18 294 1 821 236 41 20 chr9 8429847 8430190 -109432437 - L1M4 LINE L1 -4071 2313 1964 2322 111 17 37 chr9 8430374 8430778 -109431849 - HERVK9 LTR ERVK -5520 396 1 3189 125 2 6 chr9 8430778 8431275 -109431352 - MER9 LTR ERVK 0 511 17 7558 157 18 8 chr9 8431432 8432817 -109429810 + Tigger1 DNA MER2_type 1 1399 -1019 254 179 155 12 chr9 8432920 8433004 -109429623 - MER33 DNA MER1_type -224 100 5 200 309 49 81 chr9 8434038 8434161 -109428466 + L2 LINE L2 3187 3305 -8 407 330 59 39 chr9 8435632 8435835 -109426792 - MIR SINE MIR -7 255 49 320 284 60 49 chr9 8436020 8436203 -109426424 + MLT1J LTR MaLR 6 190 -321 221 147 0 0 chr9 8436305 8436339 -109426288 + (GA)n Simple_repeat Simple_repeat 2 35 0 224 182 0 18 chr9 8436340 8436395 -109426232 + GA-rich Low_complexity Low_complexity 1 54 0 1382 229 93 26 chr9 8436401 8436858 -109425769 - MLT2B1 LTR ERVL -20 534 1 265 302 63 32 chr9 8436864 8436990 -109425637 + MLT1J LTR MaLR 382 511 0 209 365 81 0 chr9 8437220 8437294 -109425333 + L2 LINE L2 2970 3049 -223 310 374 36 12 chr9 8437735 8437901 -109424726 - L1ME3A LINE L1 -273 5897 5728 243 211 33 0 chr9 8437977 8438067 -109424560 + (TA)n Simple_repeat Simple_repeat 1 93 0 500 304 87 42 chr9 8438090 8438445 -109424182 - L1M3 LINE L1 -520 5642 5272 2076 259 10 19 chr9 8439557 8440071 -109422556 - MLT1F LTR MaLR -6 536 28 2398 177 18 11 chr9 8440421 8440861 -109421766 + L1PA13 LINE L1 2 444 -6343 368 95 16 32 chr9 8440961 8441024 -109421603 - MER30 DNA MER1_type -162 68 7 3993 118 3 0 chr9 8441030 8441608 -109421019 + Tigger1 DNA MER2_type 1461 2040 -378 288 243 0 0 chr9 8442497 8442571 -109420056 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 268 338 110 15 chr9 8442727 8442863 -109419764 - MIR SINE MIR -109 153 5 380 145 0 0 chr9 8443187 8443249 -109419378 + MSTB1 LTR MaLR 344 405 -27 471 281 99 18 chr9 8443440 8443611 -109419016 - L2 LINE L2 -40 3273 3089 863 183 91 6 chr9 8443613 8443788 -109418839 + MER58A DNA MER1_type 25 214 -10 483 273 107 0 chr9 8443797 8443947 -109418680 - L2 LINE L2 -504 2810 2645 1297 86 15 40 chr9 8443947 8444145 -109418482 - MER30 DNA MER1_type -37 193 1 840 321 11 4 chr9 8444265 8444542 -109418085 - L2 LINE L2 -861 2453 2175 216 0 0 0 chr9 8444544 8444568 -109418059 + (T)n Simple_repeat Simple_repeat 1 24 0 189 216 0 0 chr9 8444869 8444906 -109417721 - MIR SINE MIR -3 259 223 5561 65 39 0 chr9 8445251 8445988 -109416639 + L1PA7 LINE L1 5386 6151 -3 265 276 52 22 chr9 8446144 8446278 -109416349 + L1MC/D LINE L1 5741 5878 -1930 201 74 0 0 chr9 8446356 8446383 -109416244 + (TA)n Simple_repeat Simple_repeat 1 27 0 1866 62 8 29 chr9 8446447 8446691 -109415936 - AluY SINE Alu -18 293 55 7073 181 13 21 chr9 8446791 8448987 -109413640 + L1PA13 LINE L1 3944 6145 -18 779 251 0 26 chr9 8449024 8449215 -109413412 + AluJb SINE Alu 127 312 0 645 274 88 18 chr9 8449502 8449842 -109412785 + L1ME3A LINE L1 4037 4400 -1746 1100 278 168 10 chr9 8449852 8450435 -109412192 + L1ME3A LINE L1 4573 5247 -899 2305 246 71 24 chr9 8450508 8451062 -109411565 + L1ME3A LINE L1 5274 5883 -287 782 230 99 5 chr9 8451062 8451253 -109411374 - MER63A DNA MER1_type -1 209 1 2305 246 71 24 chr9 8451253 8451547 -109411080 + L1ME3A LINE L1 5883 6162 -8 905 191 12 0 chr9 8451602 8451764 -109410863 - MER58B DNA MER1_type -5 336 173 240 289 45 58 chr9 8451833 8451989 -109410638 - MIR3 SINE MIR -25 183 30 890 170 105 0 chr9 8452957 8453128 -109409499 - MER5A DNA MER1_type 0 189 1 616 174 232 7 chr9 8453392 8453530 -109409097 + MER45A DNA AcHobo 1 169 -9 342 275 0 0 chr9 8453556 8453636 -109408991 + L2 LINE L2 3234 3313 0 395 330 16 68 chr9 8453692 8453883 -109408744 - MER5A DNA MER1_type -2 187 7 180 378 14 0 chr9 8453981 8454055 -109408572 + L2 LINE L2 2980 3054 -218 872 359 87 11 chr9 8454125 8454654 -109407973 + MLT1K LTR MaLR 17 585 -3 219 277 117 51 chr9 8455402 8455539 -109407088 - L2 LINE L2 -2 3311 3166 3382 133 57 25 chr9 8456003 8456636 -109405991 + MER39B LTR ERV1 1 653 0 23 54 0 0 chr9 8457467 8457504 -109405123 + AT_rich Low_complexity Low_complexity 1 37 0 592 191 0 116 chr9 8457807 8457890 -109404737 - L1MA9 LINE L1 -32 6280 6231 2232 90 0 0 chr9 8457890 8458204 -109404423 + AluSc SINE Alu 3 316 0 592 191 0 116 chr9 8458204 8458318 -109404309 - L1MA9 LINE L1 -81 6231 6105 583 76 0 0 chr9 8458688 8458818 -109403809 - AluSg/x SINE Alu 0 333 204 268 250 0 0 chr9 8459750 8459810 -109402817 + Charlie8 DNA MER1_type 1357 1416 -1001 1879 181 25 27 chr9 8460146 8460554 -109402073 - L1MA10 LINE L1 -13 6321 5915 6579 22 3 0 chr9 8460687 8461449 -109401178 - L1PA3 LINE L1 -1 6154 5391 303 167 24 60 chr9 8461558 8461642 -109400985 + L1M4 LINE L1 2896 2976 -3170 2334 95 0 0 chr9 8461994 8462288 -109400339 + AluSx SINE Alu 3 296 -16 5286 56 0 2 chr9 8462306 8462950 -109399677 + HERVL LTR ERVL 2034 2676 -2978 974 247 126 40 chr9 8463231 8463908 -109398719 - L1MEc LINE L1 -4813 1583 849 1333 275 61 7 chr9 8463926 8464369 -109398258 - L1MEc LINE L1 -5640 756 290 187 336 101 40 chr9 8464369 8464518 -109398109 - MER5A DNA MER1_type -16 173 16 208 352 66 9 chr9 8464709 8464902 -109397725 + MIR SINE MIR 18 221 -41 387 324 101 26 chr9 8464995 8465301 -109397326 - HAL1 LINE L1 -1353 1154 826 780 179 0 22 chr9 8465601 8465785 -109396842 + CT-rich Low_complexity Low_complexity 1 180 0 1909 161 0 13 chr9 8466285 8466590 -109396037 + AluJb SINE Alu 3 303 -9 243 204 0 0 chr9 8466913 8466967 -109395660 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 2374 100 0 0 chr9 8467392 8467702 -109394925 + AluSx SINE Alu 1 310 -2 400 357 78 0 chr9 8468955 8469109 -109393518 - L2 LINE L2 -1 3271 3106 518 243 41 18 chr9 8469231 8469663 -109392964 + LTR33 LTR ERVL 3 521 0 228 195 0 0 chr9 8469888 8469929 -109392698 + MER34 LTR ERV1 6 46 -496 1491 187 127 19 chr9 8469987 8470356 -109392271 + MER39 LTR ERV1 290 698 -9 1938 227 38 47 chr9 8470399 8470975 -109391652 + MLT1E3 LTR MaLR 4 574 -50 1092 173 25 0 chr9 8471260 8471457 -109391170 + MER3 DNA MER1_type 3 204 -5 3109 131 15 27 chr9 8471556 8471963 -109390664 - L1PA16 LINE L1 0 6166 5766 180 0 0 0 chr9 8471963 8471983 -109390644 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 3109 131 15 27 chr9 8471983 8472124 -109390503 - L1PA16 LINE L1 -400 5766 5625 22 0 0 0 chr9 8472159 8472181 -109390446 + AT_rich Low_complexity Low_complexity 1 22 0 211 350 114 24 chr9 8472391 8472514 -109390113 + MIR3 SINE MIR 13 146 -62 22 35 0 0 chr9 8472729 8472758 -109389869 + AT_rich Low_complexity Low_complexity 1 29 0 1959 219 16 26 chr9 8473203 8473628 -109388999 - MER74B LTR ERVL -26 596 176 566 186 9 9 chr9 8473679 8473792 -109388835 - MER74A LTR ERVL -445 113 1 262 306 86 27 chr9 8473805 8474027 -109388600 + L1MC4 LINE L1 5614 5848 -1960 875 173 21 37 chr9 8474384 8474575 -109388052 - MER5A DNA MER1_type 0 189 2 198 0 0 0 chr9 8475685 8475707 -109386920 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 38668 40 6 0 chr9 8475707 8481192 -109381435 - L1PA4 LINE L1 -16 6139 623 823 51 0 0 chr9 8481190 8481288 -109381339 - L1PA4 LINE L1 -6048 98 1 * 288 169 15 0 chr9 8481684 8481749 -109380878 - MADE1 DNA Mariner -1 79 14 355 365 76 25 chr9 8485329 8485606 -109377021 - L2 LINE L2 -5 3267 2977 407 312 153 27 chr9 8486846 8487218 -109375409 + MLT1L LTR MaLR 143 561 -54 999 228 97 28 chr9 8487476 8487949 -109374678 - Charlie4a DNA MER1_type 0 508 3 346 232 61 0 chr9 8488764 8488846 -109373781 + L1MC4 LINE L1 6617 6703 -1339 333 0 0 0 chr9 8488858 8488895 -109373732 + (GA)n Simple_repeat Simple_repeat 2 38 0 326 208 78 0 chr9 8489411 8489488 -109373139 + L1MC4 LINE L1 6621 6703 -1339 333 0 0 0 chr9 8489500 8489537 -109373090 + (GA)n Simple_repeat Simple_repeat 2 38 0 2728 231 44 5 chr9 8490220 8490973 -109371654 + L1ME1 LINE L1 3981 4762 -1384 2015 129 0 0 chr9 8491626 8491905 -109370722 + AluSx SINE Alu 1 279 -33 249 108 0 0 chr9 8491905 8491942 -109370685 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 841 271 48 36 chr9 8492353 8492604 -109370023 + MIR SINE MIR 8 261 -1 2198 193 48 51 chr9 8492656 8493441 -109369186 + L1ME1 LINE L1 4801 5621 -545 449 213 0 0 chr9 8493441 8493521 -109369106 + AluJ/FLAM SINE Alu 5 84 -228 2198 193 48 51 chr9 8493521 8493771 -109368856 + L1ME1 LINE L1 5621 5870 -296 3718 172 18 1 chr9 8493773 8494935 -109367692 - L1M2 LINE L1 -490 5822 4647 191 329 96 0 chr9 8494960 8495033 -109367594 - MIR SINE MIR -109 153 74 191 388 36 24 chr9 8495395 8495560 -109367067 + L2 LINE L2 2887 3053 -219 392 324 71 24 chr9 8497171 8497341 -109365286 + MER5B DNA MER1_type 1 178 0 233 94 0 0 chr9 8497825 8497857 -109364770 - L2 LINE L2 -259 3054 3023 190 303 0 15 chr9 8497869 8497935 -109364692 + L2 LINE L2 3249 3313 0 230 299 55 24 chr9 8498041 8498168 -109364459 - L2 LINE L2 -481 2833 2703 1010 249 155 22 chr9 8498215 8498661 -109363966 - L2 LINE L2 -590 2724 2220 207 241 12 60 chr9 8498707 8498790 -109363837 + CT-rich Low_complexity Low_complexity 5 83 0 252 203 34 17 chr9 8498908 8498967 -109363660 + MIR SINE MIR 82 141 -67 2101 221 21 0 chr9 8499245 8499712 -109362915 + LTR53 LTR ERVL 1 477 -42 1841 125 3 42 chr9 8499727 8500014 -109362613 + AluSq SINE Alu 1 276 -37 693 194 17 6 chr9 8500016 8500191 -109362436 + GA-rich Low_complexity Low_complexity 3 179 0 2271 85 0 10 chr9 8500232 8500526 -109362101 - AluY SINE Alu -20 291 1 2161 112 3 38 chr9 8500526 8500840 -109361787 - AluSx SINE Alu -1 311 9 384 306 113 22 chr9 8500844 8501066 -109361561 + MLT1I LTR MaLR 150 391 -18 776 180 97 44 chr9 8501336 8501542 -109361085 - MER20 DNA MER1_type -2 217 1 2100 94 42 7 chr9 8502349 8502636 -109359991 + AluSc SINE Alu 1 297 -12 24 0 0 0 chr9 8504333 8504357 -109358270 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 0 45 chr9 8504488 8504554 -109358073 + L2 LINE L2 3249 3311 -2 412 240 50 0 chr9 8505573 8505673 -109356954 - L2 LINE L2 -4 3309 3205 * 1553 278 42 24 chr9 8505671 8506168 -109356459 - L2 LINE L2 -500 2814 2309 288 327 137 29 chr9 8506192 8506470 -109356157 - L2 LINE L2 -1 3312 3005 1487 127 27 0 chr9 8506501 8506722 -109355905 + MER30 DNA MER1_type 4 230 0 251 121 52 0 chr9 8507748 8507806 -109354821 + HSMAR1 DNA Mariner 1227 1287 0 319 261 8 75 chr9 8509833 8509967 -109352660 + MIR SINE MIR 88 212 -50 296 244 9 61 chr9 8510916 8511031 -109351596 + MLT1L LTR MaLR 387 495 -120 230 340 29 10 chr9 8511108 8511211 -109351416 + L2 LINE L2 3181 3285 -28 189 0 0 0 chr9 8511407 8511428 -109351199 + (T)n Simple_repeat Simple_repeat 1 21 0 282 250 100 0 chr9 8512489 8512589 -109350038 - L1ME LINE L1 -381 5740 5631 2250 121 36 33 chr9 8513647 8514010 -109348617 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr9 8516028 8516060 -109346567 + AT_rich Low_complexity Low_complexity 1 32 0 533 309 104 17 chr9 8516203 8516433 -109346194 + MIR SINE MIR 12 261 -1 196 293 0 35 chr9 8516915 8516973 -109345654 + MER5A DNA MER1_type 45 100 -89 215 179 0 0 chr9 8516991 8517030 -109345597 + L2 LINE L2 3257 3295 -18 2012 151 0 3 chr9 8517223 8517527 -109345100 + AluSx SINE Alu 1 303 -9 978 70 0 56 chr9 8517529 8517672 -109344955 + AluY SINE Alu 175 309 -2 216 0 0 0 chr9 8518052 8518076 -109344551 + (A)n Simple_repeat Simple_repeat 1 24 0 216 240 133 93 chr9 8519218 8519368 -109343259 + MER5A DNA MER1_type 34 189 0 324 93 19 0 chr9 8519441 8519495 -109343132 - L1PB2 LINE L1 -2 6149 6095 503 265 7 52 chr9 8519498 8519564 -109343063 - L2 LINE L2 -9 3263 3204 1725 208 43 41 chr9 8519564 8520030 -109342597 - MLT1C LTR MaLR 0 467 1 503 265 7 52 chr9 8520030 8520099 -109342528 - L2 LINE L2 -68 3204 3134 211 292 150 0 chr9 8521001 8521114 -109341513 - MIR SINE MIR -5 257 128 23 33 0 0 chr9 8522324 8522354 -109340273 + AT_rich Low_complexity Low_complexity 1 30 0 330 383 6 16 chr9 8523021 8523204 -109339423 + MIR SINE MIR 8 188 -74 459 254 47 41 chr9 8524697 8524755 -109337872 - LTR67 LTR ERVL -293 264 208 1522 105 0 0 chr9 8524755 8524955 -109337672 - AluSg/x SINE Alu -2 310 111 459 254 47 41 chr9 8524955 8525065 -109337562 - LTR67 LTR ERVL -349 208 95 207 0 0 0 chr9 8525080 8525103 -109337524 + (A)n Simple_repeat Simple_repeat 1 23 0 2952 271 105 56 chr9 8525225 8526016 -109336611 + L2 LINE L2 1511 2393 -921 2316 77 10 3 chr9 8526016 8526315 -109336312 + AluSg SINE Alu 1 301 -9 2952 271 105 56 chr9 8526315 8526839 -109335788 + L2 LINE L2 2393 2890 -424 186 194 0 0 chr9 8527057 8527088 -109335539 - L2 LINE L2 -23 3249 3219 2438 91 0 0 chr9 8527421 8527730 -109334897 + AluSc SINE Alu 1 309 0 318 26 0 0 chr9 8528117 8528156 -109334471 + (CA)n Simple_repeat Simple_repeat 2 40 0 224 307 40 0 chr9 8528346 8528421 -109334206 - MIR SINE MIR -14 248 171 323 217 17 104 chr9 8530274 8530389 -109332238 - MIR SINE MIR -108 154 50 1922 128 45 0 chr9 8530639 8530928 -109331699 + AluSg SINE Alu 1 302 -8 428 222 126 29 chr9 8530976 8531183 -109331444 - HAL1 LINE L1 -5 2502 2276 581 290 80 8 chr9 8531259 8531497 -109331130 - L2 LINE L2 0 3313 3059 1929 228 120 86 chr9 8531497 8532815 -109329812 - HAL1 LINE L1 -331 2176 814 2579 52 3 0 chr9 8533197 8533505 -109329122 - AluY SINE Alu -2 309 1 216 200 0 0 chr9 8533758 8533803 -109328824 + (TA)n Simple_repeat Simple_repeat 1 45 0 235 0 0 54 chr9 8535646 8535683 -109326944 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 233 330 28 28 chr9 8536455 8536561 -109326066 + L2 LINE L2 3158 3263 -50 322 282 101 32 chr9 8536899 8537026 -109325601 - MER5B DNA MER1_type -39 150 5 195 329 53 26 chr9 8537316 8537392 -109325235 - MIR SINE MIR -162 100 23 353 330 98 15 chr9 8538197 8538400 -109324227 - MIR SINE MIR -34 228 9 650 255 51 23 chr9 8538965 8539199 -109323428 - MIR SINE MIR -23 239 3 188 35 35 0 chr9 8540865 8540894 -109321733 + (TAA)n Simple_repeat Simple_repeat 1 30 0 279 288 68 38 chr9 8542690 8542822 -109319805 - L2 LINE L2 0 3272 3137 370 299 149 8 chr9 8544519 8544653 -109317974 - MER5A DNA MER1_type -6 183 31 414 226 66 9 chr9 8545632 8545738 -109316889 + MER117 DNA MER1_type 7 118 -79 306 270 45 0 chr9 8545926 8546015 -109316612 - L2 LINE L2 0 3313 3221 9143 213 39 25 chr9 8547186 8548977 -109313650 - L1MC1 LINE L1 0 6333 4569 2474 62 0 0 chr9 8548977 8549292 -109313335 + AluSc SINE Alu 1 315 0 9143 213 39 25 chr9 8549292 8551311 -109311316 - L1MC1 LINE L1 -1764 4569 2460 1949 166 77 0 chr9 8551717 8552055 -109310572 - THE1B LTR MaLR 0 364 1 11437 103 5 2 chr9 8552055 8553630 -109308997 - THE1B-int LTR MaLR 0 1580 1 2058 108 108 15 chr9 8553630 8553963 -109308664 - THE1B LTR MaLR 0 364 1 283 294 49 10 chr9 8554256 8554358 -109308269 - MIR SINE MIR -94 168 63 885 242 67 8 chr9 8554497 8554737 -109307890 - L1PA16 LINE L1 0 6172 5921 474 287 84 0 chr9 8555177 8555320 -109307307 + MIR SINE MIR 89 243 -19 288 274 168 9 chr9 8555329 8555442 -109307185 - MER94 DNA DNA -1 133 3 589 316 92 5 chr9 8556487 8556693 -109305934 + MIR SINE MIR 29 252 -10 497 309 48 30 chr9 8556945 8557110 -109305517 - MIR SINE MIR -77 185 18 325 375 8 0 chr9 8557462 8557582 -109305045 - MIR SINE MIR -65 143 23 198 0 0 0 chr9 8557949 8557971 -109304656 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 1166 212 29 67 chr9 8559489 8559880 -109302747 + MLT1B LTR MaLR 1 342 -32 403 331 73 17 chr9 8560315 8560402 -109302225 + MIR SINE MIR 65 146 -116 1612 171 72 17 chr9 8560402 8560748 -109301879 - MLT1A1 LTR MaLR 0 365 1 403 331 73 17 chr9 8560748 8560838 -109301789 + MIR SINE MIR 146 252 -10 280 310 80 10 chr9 8561416 8561516 -109301111 - MIR SINE MIR -72 190 84 369 198 0 47 chr9 8562275 8562361 -109300266 - MIR SINE MIR -5 257 176 980 273 112 12 chr9 8562863 8563281 -109299346 + LTR16B LTR ERVL 1 460 -4 21 0 0 0 chr9 8564338 8564359 -109298268 + AT_rich Low_complexity Low_complexity 1 21 0 928 186 60 5 chr9 8565591 8565790 -109296837 + MER6B DNA MER2_type 1 210 0 2328 192 29 5 chr9 8566164 8566571 -109296056 + MLT2C2 LTR ERVL 7 427 -37 432 0 0 0 chr9 8566571 8566619 -109296008 + (CA)n Simple_repeat Simple_repeat 2 49 0 2328 192 29 5 chr9 8566619 8566658 -109295969 + MLT2C2 LTR ERVL 427 464 0 323 106 0 0 chr9 8567646 8567693 -109294934 - L2 LINE L2 0 3313 3267 2894 6 0 6 chr9 8567838 8568158 -109294469 + AluYb8 SINE Alu 1 318 0 22 0 0 0 chr9 8569592 8569614 -109293013 + AT_rich Low_complexity Low_complexity 1 22 0 2023 151 137 11 chr9 8570596 8570961 -109291666 + MSTA LTR MaLR 18 428 0 652 139 9 0 chr9 8570961 8571069 -109291558 + MSTA-int LTR MaLR 1 109 -1542 * 1779 128 7 14 chr9 8571064 8571354 -109291273 + MSTA-int LTR MaLR 1293 1580 0 2217 144 105 5 chr9 8571354 8571743 -109290884 + MSTA LTR MaLR 1 428 0 1090 278 86 24 chr9 8572250 8572621 -109290006 - MLT1J1 LTR MaLR -45 401 8 326 298 35 26 chr9 8573868 8573982 -109288645 - LTR67 LTR ERVL -6 551 437 1867 165 71 10 chr9 8574342 8574736 -109287891 + LTR52 LTR ERVL 1 418 -3 181 191 0 29 chr9 8575428 8575496 -109287131 + GA-rich Low_complexity Low_complexity 3 68 0 245 295 0 108 chr9 8575669 8575808 -109286819 - L3 LINE CR1 -21 1556 1433 229 402 21 0 chr9 8577597 8577694 -109284933 - MIR SINE MIR -142 120 22 355 240 88 2 chr9 8577944 8578063 -109284564 - MIR SINE MIR -67 141 13 295 312 65 14 chr9 8578100 8578238 -109284389 + MIR SINE MIR 67 211 -51 1069 202 10 5 chr9 8578586 8578794 -109283833 + MER2 DNA MER2_type 2 210 -135 23 54 0 0 chr9 8578804 8578841 -109283786 + AT_rich Low_complexity Low_complexity 1 37 0 353 269 67 10 chr9 8578933 8579037 -109283590 - MIR SINE MIR -102 160 51 7144 216 91 22 chr9 8579072 8579520 -109283107 - L1MB3 LINE L1 -2 6417 6001 2492 162 16 2 chr9 8579520 8579946 -109282681 + MSTB1 LTR MaLR 1 432 0 7144 216 91 22 chr9 8579946 8581209 -109281418 - L1MB3 LINE L1 -418 6001 4826 2065 132 0 0 chr9 8581209 8581520 -109281107 - AluSc SINE Alu 0 311 1 7144 216 91 22 chr9 8581520 8582581 -109280046 - L1MB3 LINE L1 -1593 4826 3839 1676 146 0 4 chr9 8582581 8582828 -109279799 - AluSx SINE Alu -66 246 1 7144 216 91 22 chr9 8582828 8584802 -109277825 - L1MB3 LINE L1 -2580 3839 1340 857 211 43 24 chr9 8584809 8585017 -109277610 + AluJo SINE Alu 84 295 -17 5375 172 147 18 chr9 8585039 8586207 -109276420 - L1MB3 LINE L1 -5044 1340 22 198 0 0 0 chr9 8586753 8586775 -109275852 + (T)n Simple_repeat Simple_repeat 1 22 0 212 328 0 0 chr9 8586936 8586997 -109275630 - L3b LINE CR1 -243 1340 1280 1187 321 80 5 chr9 8587288 8587874 -109274753 - L1ME3A LINE L1 -258 5981 5352 1710 263 94 22 chr9 8587900 8588890 -109273737 - L1ME3A LINE L1 -2814 3401 2341 316 298 123 6 chr9 8588928 8589099 -109273528 - L1ME3A LINE L1 -4093 2303 2113 21 0 0 0 chr9 8589278 8589299 -109273328 + AT_rich Low_complexity Low_complexity 1 21 0 364 208 28 176 chr9 8590331 8590547 -109272080 + MLT1K LTR MaLR 399 582 -6 323 335 112 6 chr9 8590560 8590739 -109271888 + L2 LINE L2 3116 3313 0 180 250 264 0 chr9 8590962 8591034 -109271593 + MIR SINE MIR 80 170 -92 241 224 0 59 chr9 8591552 8591637 -109270990 + A-rich Low_complexity Low_complexity 5 84 0 211 216 0 0 chr9 8592548 8592599 -109270028 + T-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr9 8593542 8593563 -109269064 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr9 8596434 8596459 -109266168 + AT_rich Low_complexity Low_complexity 1 25 0 281 197 28 0 chr9 8596475 8596546 -109266081 - MER116 DNA Mariner -7 73 1 220 256 0 0 chr9 8598060 8598103 -109264524 + L3 LINE CR1 1524 1566 -11 243 0 0 0 chr9 8598388 8598415 -109264212 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 360 0 0 0 chr9 8598414 8598454 -109264173 + (TA)n Simple_repeat Simple_repeat 1 40 0 12214 125 21 60 chr9 8598732 8601033 -109261594 + Tigger1 DNA MER2_type 3 2214 -204 28888 113 28 38 chr9 8601033 8607241 -109255386 - L1PA7 LINE L1 -3 6151 13 814 133 109 24 chr9 8607250 8607415 -109255212 + Tigger1 DNA MER2_type 2240 2418 0 213 308 165 0 chr9 8607571 8607662 -109254965 - MIR SINE MIR -72 136 31 22011 80 36 11 chr9 8610336 8614511 -109248116 + L1PA7 LINE L1 1852 6132 -22 194 0 0 37 chr9 8616023 8616050 -109246577 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 230 296 11 45 chr9 8616152 8616240 -109246387 + L2 LINE L2 3229 3313 0 186 299 86 34 chr9 8621612 8621729 -109240898 + MIR SINE MIR 34 156 -106 265 213 0 0 chr9 8622094 8622141 -109240486 + L2 LINE L2 3214 3260 -12 193 243 272 10 chr9 8622971 8623074 -109239553 + L2 LINE L2 2364 2493 -821 548 175 171 25 chr9 8623191 8623287 -109239340 - MER63B DNA MER1_type -750 310 229 4295 157 28 6 chr9 8623287 8624001 -109238626 + MER44D DNA MER2_type 2 603 -2 548 175 171 25 chr9 8624001 8624147 -109238480 - MER63B DNA MER1_type -831 229 7 415 252 118 30 chr9 8624257 8624392 -109238235 - L2 LINE L2 -8 3305 3159 1682 187 38 51 chr9 8624483 8624878 -109237749 + MLT1B LTR MaLR 1 390 0 372 327 57 39 chr9 8625148 8625533 -109237094 - HAL1b LINE L1 -659 689 298 184 330 174 0 chr9 8625610 8625725 -109236902 + L2 LINE L2 2901 3035 -237 34 24 0 0 chr9 8625937 8625978 -109236649 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr9 8626832 8626854 -109235773 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr9 8627661 8627696 -109234931 + AT_rich Low_complexity Low_complexity 1 35 0 653 275 67 22 chr9 8627789 8628058 -109234569 + L1MC4a LINE L1 5563 5843 -1965 270 0 0 0 chr9 8628641 8628671 -109233956 + (A)n Simple_repeat Simple_repeat 1 30 0 237 277 0 15 chr9 8629409 8629474 -109233153 - MER91 DNA MER1_type 0 140 77 2355 99 0 0 chr9 8629731 8630033 -109232594 + AluSc SINE Alu 3 304 -5 255 31 0 0 chr9 8630316 8630348 -109232279 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 1905 134 0 14 chr9 8630348 8630632 -109231995 - AluSx SINE Alu -32 280 1 894 137 0 0 chr9 8630716 8630862 -109231765 + (TA)n Simple_repeat Simple_repeat 2 147 0 836 80 0 0 chr9 8630863 8630963 -109231664 - AluSc SINE Alu -17 292 193 28 86 0 0 chr9 8630964 8631034 -109231593 + AT_rich Low_complexity Low_complexity 1 70 0 1564 179 74 23 chr9 8631896 8632247 -109230380 + MSTB LTR MaLR 1 369 -57 225 318 38 23 chr9 8632619 8632751 -109229876 + MER5A DNA MER1_type 31 164 -25 * 592 250 7 0 chr9 8632639 8632779 -109229848 - MER5A DNA MER1_type -40 149 9 246 263 123 35 chr9 8635372 8635486 -109227141 + MIR SINE MIR 57 180 -82 2546 28 0 3 chr9 8635745 8636036 -109226591 + AluY SINE Alu 22 311 0 293 221 42 63 chr9 8636046 8636088 -109226539 - MIR3 SINE MIR -5 203 162 892 154 15 67 chr9 8636088 8636220 -109226407 + MER5A DNA MER1_type 3 123 -66 1789 179 0 29 chr9 8636220 8636532 -109226095 - AluSx SINE Alu -9 303 1 892 154 15 67 chr9 8636532 8636594 -109226033 + MER5A DNA MER1_type 123 187 -2 293 221 42 63 chr9 8636594 8636646 -109225981 - MIR3 SINE MIR -46 162 111 304 194 233 0 chr9 8637717 8637820 -109224807 - MER103 DNA DNA -37 129 3 300 135 54 27 chr9 8638608 8638682 -109223945 + L1MC5 LINE L1 7832 7907 -54 25 0 0 0 chr9 8642031 8642056 -109220571 + AT_rich Low_complexity Low_complexity 1 25 0 416 216 165 44 chr9 8642516 8642735 -109219892 + MLT1H LTR MaLR 4 292 -257 370 209 90 37 chr9 8642775 8642909 -109219718 + MLT1H LTR MaLR 405 545 -4 661 268 34 43 chr9 8643684 8644009 -109218618 - MARNA DNA Mariner -9 577 256 789 245 38 5 chr9 8644216 8644428 -109218199 + MER20 DNA MER1_type 1 219 0 687 283 35 10 chr9 8644709 8644907 -109217720 - MIR SINE MIR -10 252 50 337 338 27 34 chr9 8645089 8645237 -109217390 + MIR SINE MIR 50 196 -66 291 114 0 0 chr9 8647093 8647137 -109215490 + (CA)n Simple_repeat Simple_repeat 1 44 0 229 146 0 49 chr9 8647310 8647351 -109215276 + MIR SINE MIR 80 118 -144 342 311 37 31 chr9 8647732 8647893 -109214734 + MIR SINE MIR 63 224 -38 673 282 64 37 chr9 8649232 8649485 -109213142 - MIR SINE MIR -2 260 4 396 0 0 0 chr9 8650506 8650550 -109212077 + (TG)n Simple_repeat Simple_repeat 2 45 0 414 57 0 0 chr9 8650698 8650751 -109211876 + (TATG)n Simple_repeat Simple_repeat 4 56 0 * 677 54 21 0 chr9 8650750 8650843 -109211784 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 363 23 0 0 chr9 8651021 8651065 -109211562 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr9 8651358 8651379 -109211248 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr9 8652149 8652184 -109210443 + AT_rich Low_complexity Low_complexity 1 35 0 341 310 70 16 chr9 8656835 8656964 -109205663 + MIR SINE MIR 127 262 0 236 298 43 21 chr9 8657066 8657160 -109205467 - L2 LINE L2 -9 3263 3168 26 30 0 0 chr9 8657572 8657605 -109205022 + AT_rich Low_complexity Low_complexity 1 33 0 2155 117 7 0 chr9 8661436 8661735 -109200892 - AluSp SINE Alu -12 301 1 1458 188 49 10 chr9 8662152 8662440 -109200187 + AluJo SINE Alu 1 299 -13 420 272 136 19 chr9 8663002 8663164 -109199463 - MIR SINE MIR -59 203 23 562 291 11 11 chr9 8664530 8664709 -109197918 + MIR SINE MIR 2 180 -82 189 74 0 0 chr9 8665893 8665920 -109196707 + (T)n Simple_repeat Simple_repeat 1 27 0 441 254 113 7 chr9 8666780 8666922 -109195705 - MIR SINE MIR -60 202 46 484 281 135 23 chr9 8667002 8667262 -109195365 + L2 LINE L2 2606 2894 -420 473 296 196 39 chr9 8667611 8668020 -109194607 + L3 LINE CR1 1090 1562 -15 828 159 16 0 chr9 8669019 8669145 -109193482 + AluJb SINE Alu 7 134 -178 1467 202 10 17 chr9 8669158 8669450 -109193177 + AluJo SINE Alu 6 295 -17 186 294 88 15 chr9 8670626 8670694 -109191933 - MIR3 SINE MIR -18 190 118 320 378 7 13 chr9 8671404 8671555 -109191072 + MIR3 SINE MIR 41 190 -18 203 220 55 88 chr9 8673035 8673126 -109189501 + MIR SINE MIR 119 206 -56 715 233 61 0 chr9 8675079 8675242 -109187385 - MIR SINE MIR 0 262 90 1402 179 23 101 chr9 8675423 8675819 -109186808 + MLT1A1 LTR MaLR 1 365 0 271 336 38 15 chr9 8676743 8676874 -109185753 + MIR SINE MIR 41 174 -88 385 257 88 61 chr9 8677565 8677714 -109184913 + MIR3 SINE MIR 9 161 -68 218 246 228 0 chr9 8677821 8677878 -109184749 - MIR SINE MIR -69 139 70 989 172 0 0 chr9 8678073 8678230 -109184397 - AluJb SINE Alu -11 301 145 26 0 0 0 chr9 8679750 8679776 -109182851 + AT_rich Low_complexity Low_complexity 1 26 0 2214 99 0 20 chr9 8681036 8681339 -109181288 - AluSx SINE Alu -15 297 1 242 242 8 42 chr9 8682213 8682333 -109180294 + T-rich Low_complexity Low_complexity 2 117 0 230 337 191 13 chr9 8683161 8683464 -109179163 + L2 LINE L2 2429 2785 -529 322 261 109 25 chr9 8684146 8684265 -109178362 - MIR SINE MIR -30 232 104 191 192 58 39 chr9 8684260 8684312 -109178315 - L2 LINE L2 -4 3309 3257 * 209 338 39 0 chr9 8684320 8684397 -109178230 - MIR SINE MIR -155 107 28 737 325 49 0 chr9 8686027 8686270 -109176357 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 8688172 8688210 -109174417 + AT_rich Low_complexity Low_complexity 1 38 0 2050 137 13 0 chr9 8688211 8688510 -109174117 - AluSx SINE Alu -5 307 5 622 177 0 54 chr9 8689032 8689162 -109173465 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 8691103 8691128 -109171499 + AT_rich Low_complexity Low_complexity 1 25 0 285 291 34 34 chr9 8691269 8691386 -109171241 + Tigger8 DNA MER2_type 127 243 -423 490 219 10 0 chr9 8691558 8691654 -109170973 - MER94 DNA DNA -35 99 3 237 65 0 0 chr9 8691780 8691811 -109170816 + (GGGA)n Simple_repeat Simple_repeat 2 32 0 506 29 0 14 chr9 8691915 8691984 -109170643 + (GA)n Simple_repeat Simple_repeat 1 68 0 22 0 0 0 chr9 8692471 8692493 -109170134 + AT_rich Low_complexity Low_complexity 1 22 0 266 262 85 37 chr9 8693292 8693456 -109169171 + L1ME4a LINE L1 5933 6104 -17 558 286 5 46 chr9 8693798 8693994 -109168633 - MIR SINE MIR -70 192 5 1122 186 12 39 chr9 8695999 8696257 -109166370 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 8696552 8696573 -109166054 + AT_rich Low_complexity Low_complexity 1 21 0 328 308 68 8 chr9 8697180 8697297 -109165330 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 8697376 8697411 -109165216 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 8697914 8697947 -109164680 + AT_rich Low_complexity Low_complexity 1 33 0 17257 68 1 5 chr9 8698232 8700470 -109162157 + L1P LINE L1 2780 5009 -1137 261 98 0 0 chr9 8700591 8700632 -109161995 + (C)n Simple_repeat Simple_repeat 1 41 0 474 273 58 0 chr9 8700669 8700808 -109161819 + MIR SINE MIR 111 257 -5 1873 107 4 0 chr9 8702072 8702325 -109160302 + AluSx SINE Alu 1 254 -58 981 310 90 35 chr9 8702361 8702906 -109159721 + L1M4 LINE L1 192 766 -5776 7057 118 8 98 chr9 8703007 8704341 -109158286 + Tigger1 DNA MER2_type 995 2208 -210 4774 84 0 0 chr9 8704341 8704933 -109157694 - L1PA7 LINE L1 -1 6153 5562 2817 50 0 0 chr9 8704933 8705256 -109157371 + L1PA5 LINE L1 5830 6152 -2 484 255 213 0 chr9 8706085 8706226 -109156401 - MER5A DNA MER1_type -2 187 17 214 333 11 21 chr9 8706514 8706607 -109156020 + L2 LINE L2 2604 2695 -619 262 261 108 64 chr9 8706780 8706937 -109155690 + L2 LINE L2 2896 3059 -213 208 348 87 26 chr9 8707050 8707165 -109155462 + L2 LINE L2 3134 3255 -17 413 210 15 29 chr9 8707477 8707682 -109154945 + GA-rich Low_complexity Low_complexity 1 202 0 320 202 8 42 chr9 8707690 8707809 -109154818 + A-rich Low_complexity Low_complexity 2 116 0 342 269 134 29 chr9 8707915 8708086 -109154541 + L1ME LINE L1 5607 5795 -326 501 208 88 31 chr9 8708586 8708611 -109154016 - LTR23-int LTR ERV1 -3789 4331 4309 1707 183 10 0 chr9 8708611 8708912 -109153715 - AluJo SINE Alu -8 304 1 501 208 88 31 chr9 8708912 8709045 -109153582 - LTR23-int LTR ERV1 -3811 4309 4164 488 247 58 42 chr9 8709069 8709415 -109153212 - LTR23-int LTR ERV1 -1923 2957 1952 3846 79 8 2 chr9 8709415 8709923 -109152704 - LTR6B LTR ERV1 0 558 48 6653 138 1 1 chr9 8709923 8710860 -109151767 - HERVS71 LTR ERV1 -48 8930 7994 8809 68 78 1 chr9 8710965 8712148 -109150479 - L1P LINE L1 -4015 2131 858 5845 37 17 0 chr9 8712141 8713082 -109149545 + L1PA4 LINE L1 5012 5968 -187 * 1853 148 0 24 chr9 8714694 8714991 -109147636 + AluJb SINE Alu 3 292 -20 696 172 0 67 chr9 8715100 8715234 -109147393 + FLAM_A SINE Alu 1 125 -8 316 295 18 27 chr9 8715364 8715476 -109147151 - L1MEd LINE L1 -5310 809 699 911 193 0 0 chr9 8715478 8715623 -109147004 - AluJb SINE Alu -28 284 140 1998 119 7 23 chr9 8716118 8716420 -109146207 - AluSx SINE Alu -15 297 1 2458 93 0 3 chr9 8717371 8717684 -109144943 - AluSx SINE Alu 0 312 1 799 163 124 28 chr9 8718009 8718187 -109144440 - MER31B LTR ERV1 0 466 272 255 277 50 40 chr9 8718297 8718398 -109144229 + MER5B DNA MER1_type 19 120 -58 1521 178 90 59 chr9 8718509 8718925 -109143702 - MER21B LTR ERV1 -186 745 317 1745 201 134 87 chr9 8718931 8719443 -109143184 + MER50 LTR ERV1 10 565 -169 2283 110 0 0 chr9 8719443 8719742 -109142885 - AluSg SINE Alu -11 299 1 1745 201 134 87 chr9 8719742 8719921 -109142706 + MER50 LTR ERV1 565 734 0 1215 151 45 113 chr9 8719922 8720268 -109142359 - MER39 LTR ERV1 -237 470 62 306 171 0 122 chr9 8720380 8720462 -109142165 - MER21A LTR ERV1 -859 72 1 628 270 66 5 chr9 8720470 8720709 -109141918 - L1 LINE L1 -1857 4289 4046 342 203 14 0 chr9 8720815 8720889 -109141738 - LTR54B LTR ERV1 -419 79 5 7295 168 32 15 chr9 8720890 8722190 -109140437 - MER57-int LTR ERV1 -390 7147 5825 6389 151 58 30 chr9 8722515 8723152 -109139475 - MER57-int LTR ERV1 -1717 5820 5202 1434 182 87 0 chr9 8723152 8723270 -109139357 + AluSx SINE Alu 1 107 -205 419 0 20 0 chr9 8723270 8723321 -109139306 + (TAA)n Simple_repeat Simple_repeat 2 53 0 1434 182 87 0 chr9 8723321 8723477 -109139150 + AluSx SINE Alu 107 299 -13 6389 151 58 30 chr9 8723477 8724083 -109138544 - MER57-int LTR ERV1 -2335 5202 4543 2250 94 0 20 chr9 8725567 8725865 -109136762 + AluSg SINE Alu 1 292 -18 1755 175 24 7 chr9 8726760 8727052 -109135575 - AluSx SINE Alu -15 297 1 249 238 149 36 chr9 8727099 8727435 -109135192 - L1ME4a LINE L1 -24 6097 5724 1175 177 12 49 chr9 8727444 8727533 -109135094 + MLT2B2 LTR ERVL 1 92 -423 4836 87 51 6 chr9 8727533 8728165 -109134462 - PABL_A LTR ERV1 0 660 1 1175 177 12 49 chr9 8728165 8728318 -109134309 + MLT2B2 LTR ERVL 92 234 -281 23 78 0 0 chr9 8728955 8729006 -109133621 + AT_rich Low_complexity Low_complexity 1 51 0 261 0 0 0 chr9 8729006 8729035 -109133592 + (TA)n Simple_repeat Simple_repeat 1 29 0 2165 120 0 3 chr9 8729035 8729334 -109133293 - AluSx SINE Alu -13 299 2 808 61 0 0 chr9 8729605 8729703 -109132924 + L1P LINE L1 1 98 -6048 * 5709 119 0 2 chr9 8729701 8730535 -109132092 + L1P LINE L1 623 1454 -4692 13695 51 5 0 chr9 8730648 8732936 -109129691 - L1PA5 LINE L1 -140 6014 3716 8061 28 16 0 chr9 8734857 8735864 -109126763 - L1PA3 LINE L1 0 6155 5144 4205 209 125 64 chr9 8735974 8736783 -109125844 - L1MC4 LINE L1 -144 7898 6971 2066 241 124 8 chr9 8736783 8737313 -109125314 - MLT1G1 LTR MaLR 0 595 4 4205 209 125 64 chr9 8737313 8737869 -109124758 - L1MC4 LINE L1 -1071 6971 6450 315 315 35 35 chr9 8738105 8738248 -109124379 + MIR3 SINE MIR 41 183 -25 378 0 0 0 chr9 8738923 8738965 -109123662 + (CA)n Simple_repeat Simple_repeat 2 43 0 229 203 31 31 chr9 8739061 8739125 -109123502 + G-rich Low_complexity Low_complexity 1 64 0 787 305 4 21 chr9 8739652 8739891 -109122736 - MIR SINE MIR -25 237 3 267 314 50 6 chr9 8740120 8740136 -109122491 - L1MA10 LINE L1 0 6334 6319 1347 231 34 0 chr9 8740136 8740430 -109122197 - L1ME1 LINE L1 -6 6160 5857 812 146 22 14 chr9 8740435 8740774 -109121853 + CT-rich Low_complexity Low_complexity 1 341 0 1523 163 22 22 chr9 8740800 8741077 -109121550 - AluJo SINE Alu -3 309 33 1500 185 48 0 chr9 8741077 8741347 -109121280 - L1ME1 LINE L1 -307 5859 5577 252 204 250 65 chr9 8741348 8741456 -109121171 + MER34 LTR ERV1 5 132 -410 1409 198 39 61 chr9 8741530 8741940 -109120687 + MER39 LTR ERV1 307 707 0 802 195 12 12 chr9 8741940 8742109 -109120518 - L1ME1 LINE L1 -583 5583 5415 660 298 5 6 chr9 8743222 8743415 -109119212 - MIR SINE MIR -34 228 38 810 210 23 109 chr9 8743798 8744033 -109118594 - MIR SINE MIR -10 252 39 1204 153 9 37 chr9 8744033 8744248 -109118379 - MER3 DNA MER1_type 0 209 1 810 210 23 109 chr9 8744248 8744269 -109118358 - MIR SINE MIR -223 39 18 1067 135 6 0 chr9 8744520 8744683 -109117944 - L1MA4 LINE L1 -362 5938 5775 257 214 60 0 chr9 8744684 8744768 -109117859 + (TA)n Simple_repeat Simple_repeat 1 89 0 496 289 121 0 chr9 8744768 8744958 -109117669 + LTR33 LTR ERVL 309 521 0 326 384 23 6 chr9 8745206 8745378 -109117249 + MIR3 SINE MIR 19 193 -15 23 0 0 0 chr9 8745843 8745866 -109116761 + AT_rich Low_complexity Low_complexity 1 23 0 2846 86 6 0 chr9 8746169 8746520 -109116107 + THE1A LTR MaLR 3 355 0 2857 96 7 0 chr9 8746521 8746938 -109115689 + THE1A-int LTR MaLR 2 421 -1159 2326 116 30 58 chr9 8747042 8747259 -109115368 - L1MA5A LINE L1 -175 6122 5900 1749 132 90 39 chr9 8747259 8747614 -109115013 - THE1C LTR MaLR -2 373 1 2326 116 30 58 chr9 8747614 8747701 -109114926 - L1MA5A LINE L1 -397 5900 5812 2038 158 0 0 chr9 8747701 8748004 -109114623 - AluJb SINE Alu -9 303 1 2326 116 30 58 chr9 8748004 8748162 -109114465 - L1MA5A LINE L1 -485 5812 5672 1260 220 86 40 chr9 8748169 8748574 -109114053 - L1ME2 LINE L1 -9 6155 5732 713 199 0 14 chr9 8749233 8749374 -109113253 + FLAM_C SINE Alu 3 141 -2 198 167 0 0 chr9 8749485 8749521 -109113106 + (TA)n Simple_repeat Simple_repeat 2 37 0 707 257 45 4 chr9 8749555 8749800 -109112827 - L1ME3A LINE L1 -220 5950 5696 23 33 0 0 chr9 8750312 8750342 -109112285 + AT_rich Low_complexity Low_complexity 1 30 0 216 0 0 0 chr9 8750379 8750403 -109112224 + (TA)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr9 8750471 8750506 -109112121 + AT_rich Low_complexity Low_complexity 1 35 0 1630 202 40 3 chr9 8750923 8751275 -109111352 - MLT1A1 LTR MaLR 0 365 1 306 208 0 14 chr9 8751483 8751555 -109111072 + HAL1b LINE L1 1197 1267 -81 469 33 0 0 chr9 8752098 8752159 -109110468 + L1PA4 LINE L1 6092 6152 -3 1756 170 3 50 chr9 8752159 8752541 -109110086 - MSTA LTR MaLR -64 364 1 8260 195 29 5 chr9 8752541 8754153 -109108474 - MSTA-int LTR MaLR 0 1651 2 702 151 122 14 chr9 8754154 8754293 -109108334 - MSTA LTR MaLR 0 428 275 315 93 0 0 chr9 8754293 8754336 -109108291 - THE1A LTR MaLR 0 355 313 644 179 0 0 chr9 8754336 8754459 -109108168 - THE1B LTR MaLR 0 364 242 24 0 0 0 chr9 8754750 8754774 -109107853 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr9 8754907 8754944 -109107683 + AT_rich Low_complexity Low_complexity 1 37 0 206 146 24 24 chr9 8756352 8756393 -109106234 + CT-rich Low_complexity Low_complexity 2 42 0 588 98 12 0 chr9 8756521 8756603 -109106024 + AluY SINE Alu 1 83 -227 224 307 40 0 chr9 8757192 8757267 -109105360 + MIR SINE MIR 171 248 -14 291 28 0 0 chr9 8757459 8757495 -109105132 + (TG)n Simple_repeat Simple_repeat 2 37 0 2393 93 0 3 chr9 8757882 8758193 -109104434 - AluSg SINE Alu 0 310 1 1813 144 0 0 chr9 8758210 8758460 -109104167 - AluSq SINE Alu -63 250 1 308 270 87 0 chr9 8758461 8758576 -109104051 + L1ME2 LINE L1 6040 6164 0 332 174 122 26 chr9 8758596 8758711 -109103916 + L1MC5 LINE L1 7786 7911 -50 287 278 69 14 chr9 8759646 8759790 -109102837 + BaEV-int LTR ERV1 216 367 -6282 499 325 5 10 chr9 8760135 8760338 -109102289 + BaEV-int LTR ERV1 802 1003 -6782 732 320 39 34 chr9 8760505 8761192 -109101435 + BaEV-int LTR ERV1 1048 1738 -4911 1836 118 16 6 chr9 8761379 8761701 -109100926 - L1M3f LINE L1 -4221 1107 783 4941 120 5 0 chr9 8761701 8762451 -109100176 - THE1A-int LTR MaLR -826 754 1 2288 132 0 6 chr9 8762451 8762806 -109099821 - THE1A LTR MaLR 0 355 3 3660 115 48 0 chr9 8762810 8763368 -109099259 + BaEV-int LTR ERV1 4152 4736 -2355 577 103 0 0 chr9 8763368 8763446 -109099181 + Alu SINE Alu 1 78 -233 30 111 0 0 chr9 8763947 8764082 -109098545 + AT_rich Low_complexity Low_complexity 1 135 0 203 0 37 0 chr9 8764310 8764337 -109098290 + (TAGA)n Simple_repeat Simple_repeat 3 30 0 1400 248 48 3 chr9 8764579 8764910 -109097717 - MLT1A1 LTR MaLR -6 359 14 180 0 0 0 chr9 8764965 8764985 -109097642 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2299 173 16 43 chr9 8766065 8766800 -109095827 - MER52A-int LTR ERV1 -1331 1966 953 * 5820 179 35 41 chr9 8766794 8767007 -109095620 - MER52A-int LTR ERV1 -1882 1261 1048 2275 159 3 0 chr9 8767007 8767379 -109095248 - THE1C LTR MaLR -2 373 1 5820 179 35 41 chr9 8767379 8768472 -109094155 - MER52A-int LTR ERV1 -2095 1048 30 437 271 6 54 chr9 8768477 8768643 -109093984 - MER52A LTR ERV1 0 1755 1598 489 306 22 71 chr9 8768648 8768916 -109093711 - MER52A LTR ERV1 -285 1470 1216 1756 170 69 20 chr9 8769152 8769499 -109093128 + THE1B LTR MaLR 1 364 0 11009 115 10 2 chr9 8769500 8771066 -109091561 + THE1B-int LTR MaLR 2 1579 -1 976 173 20 25 chr9 8771074 8771271 -109091356 + THE1B LTR MaLR 16 211 -153 1015 105 6 19 chr9 8771371 8771533 -109091094 - LTR14B LTR ERVK -432 176 17 570 336 8 4 chr9 8771533 8771795 -109090832 + Harlequin LTR ERV1 5494 5756 -2029 288 269 25 25 chr9 8772026 8772145 -109090482 + Harlequin LTR ERV1 4735 4853 -1796 386 298 28 37 chr9 8772561 8772776 -109089851 + Harlequin LTR ERV1 5326 5538 -1111 287 193 50 67 chr9 8773003 8773122 -109089505 + Harlequin LTR ERV1 3819 3935 -2961 1990 78 11 14 chr9 8773173 8773456 -109089171 - AluY SINE Alu -1 310 29 19477 33 7 0 chr9 8773762 8776263 -109086364 + L1P LINE L1 2545 5062 -1084 13802 89 6 5 chr9 8776363 8778427 -109084200 + L1P LINE L1 3038 5104 -1042 730 325 49 0 chr9 8828942 8829185 -109033442 - MIR SINE MIR -5 257 3 24 53 0 0 chr9 8831087 8831125 -109031502 + AT_rich Low_complexity Low_complexity 1 38 0 2023 137 13 0 chr9 8831126 8831425 -109031202 - AluSx SINE Alu -5 307 5 608 177 0 54 chr9 8831947 8832077 -109030550 + FLAM_A SINE Alu 2 124 -9 25 0 0 0 chr9 8834018 8834043 -109028584 + AT_rich Low_complexity Low_complexity 1 25 0 292 291 34 34 chr9 8834184 8834301 -109028326 + Tigger8 DNA MER2_type 127 243 -423 489 224 10 0 chr9 8834473 8834571 -109028056 - MER94 DNA DNA -35 99 1 636 143 0 0 chr9 8834696 8834808 -109027819 + (GA)n Simple_repeat Simple_repeat 1 112 0 22 0 0 0 chr9 8835294 8835316 -109027311 + AT_rich Low_complexity Low_complexity 1 22 0 277 262 85 37 chr9 8836115 8836279 -109026348 + L1ME4a LINE L1 5933 6104 -17 565 286 5 46 chr9 8836621 8836817 -109025810 - MIR SINE MIR -70 192 5 1133 189 8 39 chr9 8838822 8839081 -109023546 + AluJo SINE Alu 60 310 -2 21 0 0 0 chr9 8839376 8839397 -109023230 + AT_rich Low_complexity Low_complexity 1 21 0 343 308 68 8 chr9 8840004 8840121 -109022506 + L2 LINE L2 3147 3270 -2 35 0 0 0 chr9 8840200 8840235 -109022392 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr9 8840629 8840662 -109021965 + AT_rich Low_complexity Low_complexity 1 33 0 409 199 7 28 chr9 8841087 8841228 -109021399 + CT-rich Low_complexity Low_complexity 1 138 0 1873 159 7 3 chr9 8841693 8842001 -109020626 + AluJb SINE Alu 3 311 -1 21 0 0 0 chr9 8843847 8843868 -109018759 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr9 8843971 8843992 -109018635 + AT_rich Low_complexity Low_complexity 1 21 0 907 227 71 21 chr9 8844133 8844371 -109018256 + MIR SINE MIR 11 260 -2 245 256 24 39 chr9 8844485 8844587 -109018040 + GA-rich Low_complexity Low_complexity 3 170 0 207 357 14 13 chr9 8845594 8845673 -109016954 - MIR3 SINE MIR -54 154 75 406 327 73 29 chr9 8845991 8846196 -109016431 - MIR SINE MIR -39 223 10 183 146 0 0 chr9 8847480 8847521 -109015106 + (TTA)n Simple_repeat Simple_repeat 2 42 0 746 224 6 17 chr9 8847580 8847754 -109014873 + MER104 DNA Tc2 6 177 -3 454 333 138 4 chr9 8847757 8847988 -109014639 - MIR SINE MIR 0 262 1 204 40 0 0 chr9 8848499 8848524 -109014103 + (TG)n Simple_repeat Simple_repeat 2 26 0 360 289 47 31 chr9 8849100 8849236 -109013391 + MIR3 SINE MIR 49 187 -21 1906 148 0 22 chr9 8850085 8850402 -109012225 - AluJb SINE Alu -2 310 1 500 219 0 0 chr9 8850451 8850547 -109012080 - MER5A DNA MER1_type -80 109 14 425 309 8 8 chr9 8851489 8851615 -109011012 + MER5A DNA MER1_type 7 132 -57 1841 92 0 0 chr9 8851618 8851869 -109010758 - L1P LINE L1 -2459 3687 3437 279 286 52 104 chr9 8852070 8852301 -109010326 - L3b LINE CR1 -74 1509 1291 5632 165 87 3 chr9 8852913 8853801 -109008826 + Tigger3b DNA MER2_type 2 813 -2215 294 29 0 0 chr9 8853801 8853836 -109008791 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1968 107 7 4 chr9 8853836 8854106 -109008521 - AluSq SINE Alu -42 271 1 5632 165 87 3 chr9 8854106 8854349 -109008278 + Tigger3b DNA MER2_type 812 1230 -1 333 118 0 0 chr9 8855526 8855577 -109007050 + (CA)n Simple_repeat Simple_repeat 2 52 0 1085 159 85 0 chr9 8855926 8856127 -109006500 + L1MA7 LINE L1 5893 6110 -181 27 0 0 0 chr9 8856149 8856176 -109006451 + AT_rich Low_complexity Low_complexity 1 27 0 316 344 94 25 chr9 8859001 8859161 -109003466 + MIR3 SINE MIR 8 178 -30 279 0 0 0 chr9 8859761 8859792 -109002835 + (T)n Simple_repeat Simple_repeat 1 31 0 340 250 26 0 chr9 8859793 8859869 -109002758 + MER5B DNA MER1_type 65 142 -36 2239 99 3 0 chr9 8860145 8860438 -109002189 - AluSg SINE Alu -16 294 1 380 299 24 31 chr9 8860648 8860775 -109001852 - MIR3 SINE MIR -6 202 77 225 191 0 0 chr9 8860882 8860924 -109001703 - Charlie8 DNA MER1_type -28 2389 2348 377 301 78 44 chr9 8860935 8861375 -109001252 - Charlie8 DNA MER1_type -2196 221 1 272 324 70 28 chr9 8861561 8861703 -109000924 - MIR3 SINE MIR -49 159 12 1094 213 13 30 chr9 8862744 8862974 -108999653 + AluJb SINE Alu 61 286 -26 392 324 42 19 chr9 8863875 8864088 -108998539 + L1MC/D LINE L1 5586 5803 -2005 29 60 0 0 chr9 8864329 8864379 -108998248 + AT_rich Low_complexity Low_complexity 1 50 0 1645 182 0 10 chr9 8867868 8868159 -108994468 + AluJb SINE Alu 1 288 -24 204 125 0 0 chr9 8869071 8869103 -108993524 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 294 252 146 24 chr9 8872833 8872956 -108989671 + MIR3 SINE MIR 57 194 -14 2276 68 0 4 chr9 8873010 8873289 -108989338 - AluY SINE Alu -33 278 1 896 200 5 36 chr9 8873501 8873696 -108988931 - MER5A DNA MER1_type 0 189 1 243 220 17 0 chr9 8873763 8873822 -108988805 + (TA)n Simple_repeat Simple_repeat 2 61 0 185 0 40 0 chr9 8874045 8874070 -108988557 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 333 0 0 0 chr9 8874637 8874674 -108987953 + (TG)n Simple_repeat Simple_repeat 1 37 0 315 281 156 0 chr9 8875944 8876040 -108986587 - L2 LINE L2 -18 3295 3185 29 28 0 0 chr9 8876755 8876791 -108985836 + AT_rich Low_complexity Low_complexity 1 36 0 426 263 51 36 chr9 8876967 8877104 -108985523 - MIR3 SINE MIR -45 163 25 22 0 0 0 chr9 8879343 8879365 -108983262 + AT_rich Low_complexity Low_complexity 1 22 0 219 275 110 28 chr9 8880730 8880839 -108981788 - L2 LINE L2 -15 3298 3181 854 150 0 0 chr9 8881648 8881775 -108980852 - FLAM_C SINE Alu -16 127 1 247 375 27 18 chr9 8882697 8882809 -108979818 + L2 LINE L2 3154 3266 -6 234 0 0 0 chr9 8883134 8883160 -108979467 + (A)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr9 8886503 8886529 -108976098 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr9 8886924 8886953 -108975674 + AT_rich Low_complexity Low_complexity 1 29 0 722 185 15 29 chr9 8887204 8887367 -108975260 - MIR SINE MIR 0 262 103 1311 204 39 0 chr9 8892336 8892644 -108969983 + MER33 DNA MER1_type 5 324 0 565 308 31 62 chr9 8893827 8894275 -108968352 + L2 LINE L2 340 773 -2541 1290 346 103 36 chr9 8894275 8895873 -108966754 + L2 LINE L2 1118 2823 -491 1997 158 3 32 chr9 8895933 8896280 -108966347 - MER1B DNA MER1_type 0 337 1 21 0 0 0 chr9 8896490 8896511 -108966116 + AT_rich Low_complexity Low_complexity 1 21 0 462 257 182 30 chr9 8897671 8897873 -108964754 + MIR SINE MIR 3 228 -34 479 248 35 0 chr9 8897902 8898015 -108964612 + MIR SINE MIR 75 191 -71 275 319 21 11 chr9 8900417 8900511 -108962116 + L2 LINE L2 2976 3070 -202 265 302 35 99 chr9 8900739 8900941 -108961686 + L2 LINE L2 2909 3097 -175 582 226 68 0 chr9 8901097 8901230 -108961397 + L1MA10 LINE L1 6192 6333 -1 2265 91 3 3 chr9 8901388 8901696 -108960931 + AluY SINE Alu 1 308 -3 2122 117 0 0 chr9 8902307 8902610 -108960017 - AluSg SINE Alu 0 303 1 2100 98 0 80 chr9 8904000 8904360 -108958267 + AluY SINE Alu 1 333 0 353 286 56 89 chr9 8907244 8907513 -108955114 - MIR SINE MIR -1 261 2 338 263 0 0 chr9 8907611 8907706 -108954921 + MIR SINE MIR 120 214 -48 1326 207 46 25 chr9 8907977 8908065 -108954562 + AluJo SINE Alu 1 86 -226 2064 94 33 0 chr9 8908065 8908370 -108954257 + AluSp SINE Alu 1 314 0 1326 207 46 25 chr9 8908370 8908560 -108954067 + AluJo SINE Alu 86 286 -26 22 56 0 0 chr9 8909172 8909208 -108953419 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr9 8912188 8912208 -108950419 + (A)n Simple_repeat Simple_repeat 1 20 0 705 288 95 21 chr9 8912823 8913150 -108949477 + L2 LINE L2 2943 3293 -20 594 226 119 43 chr9 8913721 8913956 -108948671 + MIR SINE MIR 7 259 -3 498 91 0 0 chr9 8914493 8914570 -108948057 + (CA)n Simple_repeat Simple_repeat 2 78 0 276 344 139 35 chr9 8915448 8916018 -108946609 + L2 LINE L2 2045 2673 -641 624 233 38 88 chr9 8916019 8916281 -108946346 - MER112 DNA MER1_type 0 260 12 507 17 0 0 chr9 8916701 8916761 -108945866 + (CA)n Simple_repeat Simple_repeat 2 61 0 1077 80 98 18 chr9 8917319 8917482 -108945145 - MER30 DNA MER1_type -54 176 1 230 245 0 53 chr9 8918228 8918322 -108944305 + GA-rich Low_complexity Low_complexity 2 90 0 1778 108 0 15 chr9 8918796 8919056 -108943571 - AluSc SINE Alu -4 305 50 183 129 0 0 chr9 8920580 8920611 -108942016 + (A)n Simple_repeat Simple_repeat 1 31 0 306 50 0 0 chr9 8921079 8921119 -108941508 + (A)n Simple_repeat Simple_repeat 1 40 0 211 282 0 0 chr9 8921643 8921714 -108940913 + A-rich Low_complexity Low_complexity 1 71 0 230 217 0 0 chr9 8923361 8923407 -108939220 + L1MC4 LINE L1 6658 6703 -1339 2448 76 0 10 chr9 8925870 8926184 -108936443 + AluY SINE Alu 1 311 0 212 162 0 0 chr9 8926367 8926404 -108936223 + (TATG)n Simple_repeat Simple_repeat 2 38 0 749 289 47 16 chr9 8926997 8927250 -108935377 + MIR SINE MIR 2 262 0 205 356 0 0 chr9 8928247 8928334 -108934293 + MIR SINE MIR 160 246 -16 180 0 0 0 chr9 8928524 8928544 -108934083 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 450 79 0 0 chr9 8929393 8929456 -108933171 + (TG)n Simple_repeat Simple_repeat 2 64 0 1712 172 0 26 chr9 8930536 8930839 -108931788 + AluJo SINE Alu 6 300 -12 565 284 86 46 chr9 8930866 8931169 -108931458 - MER102b DNA MER1_type -8 333 19 242 239 14 0 chr9 8931540 8931611 -108931016 + (TA)n Simple_repeat Simple_repeat 1 72 0 1543 194 7 14 chr9 8931612 8931900 -108930727 - AluJb SINE Alu -26 286 1 21 0 0 0 chr9 8932007 8932028 -108930599 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr9 8932235 8932263 -108930364 + AT_rich Low_complexity Low_complexity 1 28 0 2027 145 49 25 chr9 8935291 8935657 -108926970 + THE1C LTR MaLR 1 375 0 393 258 88 57 chr9 8935671 8935865 -108926762 + MIR SINE MIR 39 238 -24 2147 195 28 11 chr9 8935951 8936408 -108926219 + MLT1C LTR MaLR 1 465 -2 341 239 146 23 chr9 8936412 8936542 -108926085 - MIR SINE MIR -83 179 34 1920 130 29 29 chr9 8937328 8937635 -108924992 - AluSx SINE Alu -5 307 1 430 286 29 0 chr9 8939181 8939387 -108923240 + MIR SINE MIR 49 229 -33 262 361 0 53 chr9 8940082 8940215 -108922412 + L2 LINE L2 3188 3313 0 247 369 0 0 chr9 8940936 8941020 -108921607 + L2 LINE L2 3188 3271 -42 28 48 0 0 chr9 8943351 8943393 -108919234 + AT_rich Low_complexity Low_complexity 1 42 0 219 235 20 0 chr9 8945105 8945156 -108917471 + GA-rich Low_complexity Low_complexity 4 55 0 336 200 0 0 chr9 8946780 8946850 -108915777 + A-rich Low_complexity Low_complexity 1 70 0 184 128 21 21 chr9 8946943 8946990 -108915637 + GA-rich Low_complexity Low_complexity 2 48 0 195 100 0 0 chr9 8947553 8947583 -108915044 + (TA)n Simple_repeat Simple_repeat 1 30 0 26 0 0 0 chr9 8947796 8947822 -108914805 + AT_rich Low_complexity Low_complexity 1 26 0 250 200 17 0 chr9 8949023 8949083 -108913544 + A-rich Low_complexity Low_complexity 1 61 0 824 65 0 0 chr9 8950325 8950432 -108912195 - L1PA5 LINE L1 -5 6149 6043 343 219 27 0 chr9 8955469 8955542 -108907085 - L2 LINE L2 -2 3311 3237 214 256 105 12 chr9 8955599 8955685 -108906942 + MIR SINE MIR 141 234 -28 349 198 23 0 chr9 8956922 8957008 -108905619 - L1MC4 LINE L1 -1339 6703 6616 32 57 0 0 chr9 8958791 8958844 -108903783 + AT_rich Low_complexity Low_complexity 1 53 0 1293 221 66 138 chr9 8959063 8960622 -108902005 + L1MC4 LINE L1 6539 7896 -146 1390 228 7 7 chr9 8961758 8962056 -108900571 - AluJb SINE Alu -11 301 4 605 210 14 22 chr9 8962058 8962196 -108900431 - FLAM_C SINE Alu -6 137 1 202 195 0 0 chr9 8962198 8962239 -108900388 + (TG)n Simple_repeat Simple_repeat 2 42 0 2133 135 3 0 chr9 8964236 8964539 -108898088 - AluSg SINE Alu -6 304 1 881 122 8 0 chr9 8964694 8964825 -108897802 - AluSx SINE Alu -9 303 172 543 107 12 12 chr9 8964825 8964909 -108897718 - AluSx SINE Alu -227 86 3 2042 136 3 3 chr9 8964997 8965298 -108897329 - AluSx SINE Alu -9 303 3 272 163 20 0 chr9 8965298 8965347 -108897280 + MADE1 DNA Mariner 30 79 -1 198 0 0 0 chr9 8965419 8965441 -108897186 + (T)n Simple_repeat Simple_repeat 1 22 0 2115 125 0 6 chr9 8967017 8967330 -108895297 - AluSx SINE Alu -1 311 1 203 167 0 0 chr9 8967852 8967888 -108894739 + GA-rich Low_complexity Low_complexity 2 37 0 1677 194 7 0 chr9 8967897 8968191 -108894436 + AluJb SINE Alu 6 301 -11 1902 152 3 3 chr9 8968900 8969197 -108893430 - AluSx SINE Alu -15 297 1 2483 68 13 0 chr9 8969211 8969518 -108893109 - AluSp SINE Alu 0 313 3 227 304 138 29 chr9 8969525 8969663 -108892964 - L2 LINE L2 -567 2747 2595 275 306 28 19 chr9 8970803 8970911 -108891716 + MIR SINE MIR 152 260 -2 242 231 19 0 chr9 8971982 8972034 -108890593 + CT-rich Low_complexity Low_complexity 3 55 0 286 100 0 80 chr9 8974187 8974237 -108888390 + U2 snRNA snRNA 1 46 -142 2183 103 0 4 chr9 8974436 8974741 -108887886 + AluSg SINE Alu 1 304 0 1427 182 50 12 chr9 8975664 8975922 -108886705 + AluJb SINE Alu 1 268 -44 213 268 0 0 chr9 8977824 8977865 -108884762 + L2 LINE L2 3215 3255 -17 213 39 0 0 chr9 8977961 8977987 -108884640 + (TA)n Simple_repeat Simple_repeat 2 27 0 2326 106 0 0 chr9 8977990 8978302 -108884325 + AluSx SINE Alu 1 312 0 342 67 0 0 chr9 8978309 8978354 -108884273 + (CA)n Simple_repeat Simple_repeat 2 46 0 222 235 0 0 chr9 8978354 8978405 -108884222 + (TA)n Simple_repeat Simple_repeat 2 52 0 984 203 83 0 chr9 8979681 8979922 -108882705 + L1MA4 LINE L1 6036 6296 -4 330 87 0 0 chr9 8980966 8981012 -108881615 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr9 8981053 8981075 -108881552 + AT_rich Low_complexity Low_complexity 1 22 0 2337 206 28 29 chr9 8981473 8982134 -108880493 + LTR27 LTR ERV1 1 498 -138 22 35 0 0 chr9 8982353 8982382 -108880245 + AT_rich Low_complexity Low_complexity 1 29 0 1922 158 0 0 chr9 8982958 8983266 -108879361 - AluJb SINE Alu 0 308 1 714 219 63 15 chr9 8983322 8983527 -108879100 - L1M4 LINE L1 -1034 5112 4898 644 256 48 6 chr9 8983526 8983751 -108878876 + L1ME2 LINE L1 5756 5993 -177 * 465 186 21 0 chr9 8983800 8983897 -108878730 + L1MA10 LINE L1 6221 6319 -15 209 152 22 0 chr9 8983902 8983930 -108878697 + (CATATA)n Simple_repeat Simple_repeat 3 29 -20 1978 202 14 31 chr9 8983930 8983966 -108878661 + MER47B DNA MER2_type 1 36 -2287 1888 116 4 0 chr9 8983966 8984224 -108878403 - AluSg SINE Alu -11 299 41 1714 155 0 15 chr9 8984224 8984495 -108878132 - AluSx SINE Alu -45 267 1 1978 202 14 31 chr9 8984495 8984882 -108877745 + MER47B DNA MER2_type 34 418 0 209 152 22 0 chr9 8984882 8984899 -108877728 + (CATATA)n Simple_repeat Simple_repeat 29 49 0 1944 117 14 21 chr9 8984946 8985237 -108877390 + AluSx SINE Alu 1 289 -23 369 0 0 0 chr9 8986630 8986671 -108875956 + (TG)n Simple_repeat Simple_repeat 2 42 0 282 319 92 17 chr9 8987128 8987247 -108875380 + L2 LINE L2 3144 3271 -1 250 282 103 136 chr9 8987815 8988145 -108874482 + L2 LINE L2 2954 3272 0 22 35 0 0 chr9 8988641 8988670 -108873957 + AT_rich Low_complexity Low_complexity 1 29 0 212 345 84 21 chr9 8992504 8992646 -108869981 + MIR3 SINE MIR 33 183 -25 23 0 0 0 chr9 8994653 8994676 -108867951 + AT_rich Low_complexity Low_complexity 1 23 0 180 306 69 69 chr9 8996162 8996234 -108866393 - L2 LINE L2 0 3313 3242 241 272 7 110 chr9 8997543 8997582 -108865045 + L2 LINE L2 2938 2979 -293 2170 95 3 3 chr9 8997582 8997912 -108864715 - AluSp SINE Alu 0 330 1 241 272 7 110 chr9 8997912 8998007 -108864620 + L2 LINE L2 2979 3059 -213 933 197 16 16 chr9 8998084 8998272 -108864355 + MER5A DNA MER1_type 1 188 -1 343 346 58 6 chr9 8999829 8999985 -108862642 - L2 LINE L2 -1 3271 3108 463 322 64 35 chr9 9001502 9001816 -108860811 + L1ME LINE L1 2979 3301 -2845 2346 90 3 0 chr9 9001824 9002125 -108860502 + AluY SINE Alu 1 302 -9 270 116 0 0 chr9 9002125 9002168 -108860459 + (GGGGA)n Simple_repeat Simple_repeat 1 43 0 462 188 111 8 chr9 9002170 9002287 -108860340 + FLAM_C SINE Alu 5 133 0 438 273 108 45 chr9 9002550 9002884 -108859743 + L1ME LINE L1 4905 5259 -887 444 285 57 44 chr9 9002910 9003398 -108859229 + L1ME LINE L1 5312 5803 -367 1739 141 4 15 chr9 9003418 9003680 -108858947 - MER1B DNA MER1_type -80 259 1 627 197 0 53 chr9 9003709 9003841 -108858786 - FLAM_A SINE Alu -8 125 1 1851 174 0 7 chr9 9004227 9004515 -108858112 + AluJb SINE Alu 1 286 -26 32 26 0 0 chr9 9004515 9004554 -108858073 + AT_rich Low_complexity Low_complexity 1 39 0 2572 121 3 5 chr9 9005078 9005449 -108857178 - THE1C LTR MaLR 0 375 6 23 33 0 0 chr9 9005640 9005670 -108856957 + AT_rich Low_complexity Low_complexity 1 30 0 257 313 80 0 chr9 9006115 9006227 -108856400 - MIR SINE MIR -21 241 121 28 0 0 26 chr9 9006358 9006377 -108856250 + AT_rich Low_complexity Low_complexity 1 19 -19 1997 133 3 0 chr9 9006377 9006662 -108855965 + AluSg SINE Alu 1 286 -24 28 0 0 26 chr9 9006662 9006681 -108855946 + AT_rich Low_complexity Low_complexity 19 38 0 25 51 0 0 chr9 9007117 9007156 -108855471 + AT_rich Low_complexity Low_complexity 1 39 0 2234 102 0 10 chr9 9007223 9007536 -108855091 + AluY SINE Alu 1 310 -1 24 32 0 0 chr9 9007672 9007703 -108854924 + AT_rich Low_complexity Low_complexity 1 31 0 298 324 29 0 chr9 9009215 9009317 -108853310 + MER5A DNA MER1_type 40 144 -45 1739 194 35 78 chr9 9011160 9011682 -108850945 - MLT1D LTR MaLR -3 502 4 219 375 94 31 chr9 9013178 9013434 -108849193 - L2 LINE L2 -184 3088 2817 206 247 143 137 chr9 9014367 9014549 -108848078 - L3 LINE CR1 -130 1447 1265 1921 127 69 30 chr9 9014846 9015207 -108847420 + THE1C LTR MaLR 1 375 0 2314 96 0 3 chr9 9015218 9015520 -108847107 - AluY SINE Alu -10 301 1 218 289 0 21 chr9 9017840 9017937 -108844690 + A-rich Low_complexity Low_complexity 2 96 0 22 0 0 0 chr9 9018220 9018242 -108844385 + AT_rich Low_complexity Low_complexity 1 22 0 1816 110 8 34 chr9 9018560 9018856 -108843771 + AluSx SINE Alu 34 322 0 2452 137 0 0 chr9 9019315 9019679 -108842948 + THE1B LTR MaLR 1 364 0 2241 82 26 7 chr9 9019971 9020275 -108842352 - AluSp SINE Alu -3 310 1 9674 193 25 6 chr9 9020285 9022051 -108840576 + L1M1 LINE L1 111 1911 -5654 21 0 0 0 chr9 9022885 9022906 -108839721 + AT_rich Low_complexity Low_complexity 1 21 0 259 254 132 35 chr9 9024436 9024550 -108838077 - L2 LINE L2 -6 3307 3183 339 355 74 31 chr9 9025027 9025283 -108837344 - L2 LINE L2 -757 2557 2291 382 307 106 5 chr9 9025892 9026081 -108836546 + MIR SINE MIR 49 256 -6 186 43 0 0 chr9 9026295 9026318 -108836309 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1361 166 73 7 chr9 9027365 9027667 -108834960 + L1MA8 LINE L1 5964 6285 -6 2098 126 0 7 chr9 9027720 9028022 -108834605 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr9 9029993 9030017 -108832610 + AT_rich Low_complexity Low_complexity 1 24 0 269 321 18 18 chr9 9030323 9030432 -108832195 + MIR SINE MIR 98 206 -56 423 242 87 60 chr9 9030544 9030693 -108831934 + MIR SINE MIR 109 261 -1 264 333 65 24 chr9 9030706 9030829 -108831798 - MIR3 SINE MIR -72 136 9 1825 166 6 13 chr9 9031780 9032094 -108830533 + AluJb SINE Alu 1 312 0 349 221 19 10 chr9 9032094 9032198 -108830429 + GA-rich Low_complexity Low_complexity 5 109 0 260 45 68 0 chr9 9032284 9032328 -108830299 + A-rich Low_complexity Low_complexity 1 47 0 * 270 125 0 0 chr9 9032326 9032374 -108830253 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 285 51 0 0 chr9 9032460 9032499 -108830128 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 429 304 88 21 chr9 9033930 9034124 -108828503 - L3 LINE CR1 -106 1471 1265 640 255 76 0 chr9 9034547 9034692 -108827935 - MER82 DNA MER2_type -25 628 473 1723 163 0 72 chr9 9039058 9039224 -108823403 - AluSx SINE Alu -16 296 162 303 49 0 0 chr9 9039224 9039265 -108823362 + (TG)n Simple_repeat Simple_repeat 2 42 0 1723 163 0 72 chr9 9039265 9039417 -108823210 - AluSx SINE Alu -150 162 1 1795 176 35 23 chr9 9039422 9039853 -108822774 - L1MA8 LINE L1 0 6291 5856 459 289 28 0 chr9 9041372 9041514 -108821113 - MER69 DNA AcHobo -2380 146 1 28 48 0 0 chr9 9041732 9041774 -108820853 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr9 9042320 9042341 -108820286 + AT_rich Low_complexity Low_complexity 1 21 0 231 296 112 40 chr9 9042911 9043036 -108819591 + L2 LINE L2 3139 3272 0 1380 197 10 48 chr9 9043214 9043523 -108819104 + AluJo SINE Alu 1 297 -15 270 274 147 0 chr9 9043524 9043619 -108819008 - L2 LINE L2 -13 3300 3192 220 224 0 0 chr9 9043918 9043967 -108818660 + (TAA)n Simple_repeat Simple_repeat 1 49 0 439 346 87 9 chr9 9043970 9044201 -108818426 - MIR SINE MIR 0 262 14 327 200 50 0 chr9 9044812 9044872 -108817755 - L2 LINE L2 -16 3256 3194 297 328 94 18 chr9 9044930 9045101 -108817526 - MIR SINE MIR -6 256 73 254 244 204 35 chr9 9045367 9045539 -108817088 - L2 LINE L2 -5 3308 3108 249 175 16 32 chr9 9045540 9045603 -108817024 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 1203 249 97 45 chr9 9046821 9047315 -108815312 + MLT2B1 LTR ERVL 1 520 0 352 289 33 25 chr9 9047686 9047807 -108814820 + MIR3 SINE MIR 79 200 -8 28 0 0 0 chr9 9047858 9047886 -108814741 + AT_rich Low_complexity Low_complexity 1 28 0 202 340 41 31 chr9 9048984 9049081 -108813546 - MIR SINE MIR -78 130 33 354 23 0 0 chr9 9052479 9052522 -108810105 + (TG)n Simple_repeat Simple_repeat 2 44 0 316 300 0 18 chr9 9055273 9055383 -108807244 - L2 LINE L2 -16 3297 3190 213 66 115 0 chr9 9055389 9055450 -108807177 + (TA)n Simple_repeat Simple_repeat 2 69 0 29 60 0 0 chr9 9055770 9055820 -108806807 + AT_rich Low_complexity Low_complexity 1 50 0 432 359 32 14 chr9 9056499 9056719 -108805908 + MLT1K LTR MaLR 23 246 -342 273 298 72 53 chr9 9058001 9058263 -108804364 + L1ME4a LINE L1 5637 5903 -218 23 0 0 0 chr9 9058461 9058484 -108804143 + AT_rich Low_complexity Low_complexity 1 23 0 2155 104 0 0 chr9 9059183 9059498 -108803129 - AluSc SINE Alu 0 315 1 1571 197 7 0 chr9 9060289 9060579 -108802048 - AluJb SINE Alu -13 299 8 671 115 0 26 chr9 9060627 9060740 -108801887 + AluSp/q SINE Alu 204 313 0 234 81 0 0 chr9 9060904 9060941 -108801686 + (A)n Simple_repeat Simple_repeat 1 37 0 25 31 0 0 chr9 9061038 9061070 -108801557 + AT_rich Low_complexity Low_complexity 1 32 0 356 86 0 17 chr9 9063700 9063758 -108798869 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 6085 183 38 71 chr9 9063953 9065356 -108797271 + MER52A LTR ERV1 399 1755 0 237 261 0 15 chr9 9065977 9066042 -108796585 + GA-rich Low_complexity Low_complexity 1 64 0 339 268 84 106 chr9 9066366 9066545 -108796082 + MER5B DNA MER1_type 4 178 0 229 351 77 36 chr9 9066851 9067019 -108795608 + L2 LINE L2 2918 3092 -180 373 248 97 31 chr9 9067884 9068110 -108794517 - L1ME LINE L1 -364 5757 5517 1629 180 7 0 chr9 9070273 9070556 -108792071 - AluJo SINE Alu -16 296 12 2259 81 17 10 chr9 9070737 9071035 -108791592 + AluSp SINE Alu 4 303 -10 764 194 90 0 chr9 9074481 9074636 -108787991 - MER20 DNA MER1_type -19 200 32 359 267 87 52 chr9 9076589 9076761 -108785866 + MER5A DNA MER1_type 8 185 -4 844 274 202 13 chr9 9076954 9077330 -108785297 + MER69 DNA AcHobo 1 447 -2079 424 254 42 0 chr9 9077310 9077428 -108785199 + MER69 DNA AcHobo 1917 2039 -487 * 1729 101 26 38 chr9 9077495 9077652 -108784975 - L1P4 LINE L1 -697 5477 5320 2371 95 0 3 chr9 9077652 9077956 -108784671 - AluSq SINE Alu -10 303 1 1729 101 26 38 chr9 9077956 9078218 -108784409 - L1P4 LINE L1 -854 5320 5058 21 36 0 0 chr9 9078416 9078444 -108784183 + AT_rich Low_complexity Low_complexity 1 28 0 193 200 60 0 chr9 9081486 9081536 -108781091 - MIR SINE MIR -93 169 117 258 156 0 0 chr9 9082403 9082448 -108780179 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 516 270 0 0 chr9 9082448 9082559 -108780068 - FLAM_A SINE Alu -22 120 10 279 0 0 0 chr9 9082791 9082822 -108779805 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2100 127 3 3 chr9 9083971 9084278 -108778349 - AluSx SINE Alu -5 307 1 2257 108 0 0 chr9 9087544 9087849 -108774778 + AluSq SINE Alu 1 305 -8 1354 148 44 109 chr9 9087917 9088242 -108774385 + MER46B DNA MER2_type 3 176 -2555 188 0 74 0 chr9 9088242 9088269 -108774358 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1354 148 44 109 chr9 9088269 9088327 -108774300 + MER46B DNA MER2_type 176 236 0 270 154 0 0 chr9 9088391 9088430 -108774197 + MER57A LTR ERV1 295 333 -70 27 0 0 0 chr9 9088432 9088459 -108774168 + AT_rich Low_complexity Low_complexity 1 27 0 503 283 21 26 chr9