1290 84 6 0 chr6 4 182 -189279372 + MER4E LTR ERV1 588 766 0 2113 141 33 25 chr6 197 558 -189278996 - THE1B LTR MaLR 0 364 1 1564 260 101 24 chr6 867 1629 -189277925 + HAL1 LINE L1 1681 2501 -6 185 273 171 23 chr6 3283 3371 -189276183 + L2 LINE L2 3166 3266 -6 2355 99 0 10 chr6 4049 4361 -189275193 - AluSc SINE Alu 0 309 1 3022 208 118 84 chr6 4892 6055 -189273499 + L1M4 LINE L1 830 2064 -4580 1100 79 22 11 chr6 6055 6233 -189273321 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 3022 208 118 84 chr6 6233 7045 -189272509 + L1M4 LINE L1 2064 2847 -3797 3186 88 31 2 chr6 7305 7758 -189271796 - L1PA10 LINE L1 -5 6163 5698 393 95 0 0 chr6 7823 7886 -189271668 + (TA)n Simple_repeat Simple_repeat 2 64 0 2205 140 88 25 chr6 7888 8296 -189271258 + Tigger2a DNA MER2_type 1 434 0 465 283 82 22 chr6 9127 9311 -189270243 + L2 LINE L2 3118 3312 -1 1016 283 134 27 chr6 10661 10935 -189268619 - L2 LINE L2 -1 3312 3069 6673 38 48 0 chr6 10935 11769 -189267785 + L1PA5 LINE L1 5273 6146 -8 1016 283 134 27 chr6 11769 12221 -189267333 - L2 LINE L2 -244 3069 2533 905 275 94 54 chr6 12505 13080 -189266474 - L1M4 LINE L1 -2580 3566 2969 1947 200 70 8 chr6 13082 13551 -189266003 - Tigger5 DNA MER2_type 0 2323 1826 962 218 18 65 chr6 13542 13677 -189265877 - Tigger5 DNA MER2_type -200 218 97 * 2281 79 3 7 chr6 13677 13969 -189265585 - AluSc SINE Alu -14 295 5 962 218 18 65 chr6 13969 14062 -189265492 - Tigger5 DNA MER2_type -321 97 1 3173 204 8 3 chr6 14139 14920 -189264634 - L1P LINE L1 -843 5308 4523 656 310 51 66 chr6 14918 15873 -189263681 - L1PA12 LINE L1 -5691 1890 950 * 1516 222 23 21 chr6 15878 16311 -189263243 - L1M4 LINE L1 -3552 2594 2161 22 0 0 0 chr6 16314 16336 -189263218 + AT_rich Low_complexity Low_complexity 1 22 0 821 197 0 0 chr6 16341 16483 -189263071 - FLAM_C SINE Alu -1 142 1 245 77 19 58 chr6 16485 16537 -189263017 - L1M2 LINE L1 -3971 2878 2829 * 376 254 51 30 chr6 16533 16828 -189262726 - L1MC5 LINE L1 -315 7882 7582 21 57 0 0 chr6 17331 17366 -189262188 + AT_rich Low_complexity Low_complexity 1 35 0 769 229 139 28 chr6 17382 17569 -189261985 - L1MC5 LINE L1 -1866 6178 6013 2250 129 0 0 chr6 17569 17879 -189261675 - AluSx SINE Alu -2 310 1 769 229 139 28 chr6 17879 18079 -189261475 - L1MC5 LINE L1 -2031 6013 5748 * 14510 28 0 0 chr6 18074 19874 -189259680 - L1PA3 LINE L1 -1036 5110 3311 7632 26 2 0 chr6 19876 20924 -189258630 + L1PA3 LINE L1 5105 6155 0 399 224 32 45 chr6 20929 21085 -189258469 - L1MC5 LINE L1 -2283 5761 5608 3720 178 6 1 chr6 21094 21763 -189257791 + L1PA16 LINE L1 5491 6162 -4 2783 62 11 0 chr6 21874 22246 -189257308 - L1PA7 LINE L1 -364 5790 5415 2671 67 15 0 chr6 22246 22587 -189256967 + L1PA7 LINE L1 5805 6150 -4 235 167 45 0 chr6 22613 22679 -189256875 + L1MCa LINE L1 1995 2063 -4363 229 192 0 0 chr6 22637 22689 -189256865 - L1MC4 LINE L1 -1339 6703 6652 * 7177 228 115 35 chr6 23348 24382 -189255172 - L1MC5 LINE L1 -805 5577 4627 189 0 0 0 chr6 24382 24403 -189255151 + (TG)n Simple_repeat Simple_repeat 2 22 0 7177 228 115 35 chr6 24403 24518 -189255036 - L1MC5 LINE L1 -1755 4627 4523 315 215 13 0 chr6 24518 24597 -189254957 + MLT1A2 LTR MaLR 1 80 -294 7177 228 115 35 chr6 24597 25076 -189254478 - L1MC5 LINE L1 -1859 4523 4084 243 0 0 0 chr6 25076 25103 -189254451 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 7177 228 115 35 chr6 25103 25155 -189254399 - L1MC5 LINE L1 -2298 4084 4038 2177 92 0 0 chr6 25155 25428 -189254126 - AluSx SINE Alu 0 312 40 7177 228 115 35 chr6 25428 27236 -189252318 - L1MC5 LINE L1 -2344 4038 1716 1175 129 119 61 chr6 27236 27546 -189252008 - L1MC5 LINE L1 -5052 1332 1005 223 146 42 0 chr6 27546 27594 -189251960 + (TA)n Simple_repeat Simple_repeat 2 51 0 24 53 0 0 chr6 27717 27755 -189251799 + AT_rich Low_complexity Low_complexity 1 38 0 778 193 0 0 chr6 27755 27895 -189251659 - L1MC5 LINE L1 -5709 675 536 627 215 0 20 chr6 27902 28051 -189251503 - L1MC5 LINE L1 -6217 167 22 186 103 0 0 chr6 28250 28279 -189251275 + (G)n Simple_repeat Simple_repeat 1 29 0 3302 240 41 14 chr6 28453 29498 -189250056 - L1M4 LINE L1 -1480 4666 3594 326 134 149 0 chr6 29496 29563 -189249991 + L1MB4 LINE L1 5807 5883 -297 * 361 213 64 0 chr6 29576 29670 -189249884 - L1M4 LINE L1 -2553 3593 3494 1604 161 85 55 chr6 29706 29737 -189249817 - L1MB4 LINE L1 -21 6159 6130 2422 93 0 0 chr6 29737 30038 -189249516 - AluSx SINE Alu -11 301 1 1604 161 85 55 chr6 30038 30428 -189249126 - L1MB4 LINE L1 -50 6130 5725 362 186 41 21 chr6 30491 30588 -189248966 - L1MCc LINE L1 -5142 1281 1183 1054 229 92 19 chr6 30595 31019 -189248535 - L1MCc LINE L1 -5184 1239 785 716 160 80 0 chr6 31036 31211 -189248343 - MER53 DNA DNA 0 189 1 446 294 73 29 chr6 31721 31993 -189247561 - L1MCc LINE L1 -6086 337 54 827 180 77 0 chr6 32681 32875 -189246679 - MLT1B LTR MaLR -81 309 101 2520 81 0 0 chr6 32963 33270 -189246284 - AluY SINE Alu -4 307 1 230 323 115 54 chr6 33622 34256 -189245298 + L2 LINE L2 2305 2977 -337 343 267 200 13 chr6 34311 34461 -189245093 + MIR SINE MIR 29 206 -56 225 269 0 0 chr6 34488 34540 -189245014 - MIR SINE MIR -25 237 186 212 343 30 20 chr6 34518 34617 -189244937 + L2 LINE L2 2979 3078 -194 * 1264 174 72 33 chr6 34846 35179 -189244375 - MLT1B LTR MaLR -31 359 3 390 210 12 0 chr6 36964 37045 -189242509 + L2 LINE L2 3190 3271 -1 463 247 0 0 chr6 37716 37809 -189241745 + MER81 DNA DNA 2 94 -20 2144 125 0 3 chr6 38933 39230 -189240324 + AluSx SINE Alu 1 296 -16 29 0 0 0 chr6 39376 39405 -189240149 + AT_rich Low_complexity Low_complexity 1 29 0 300 20 61 0 chr6 40636 40685 -189238869 + (TC)n Simple_repeat Simple_repeat 2 53 0 255 243 135 36 chr6 40900 41011 -189238543 - L2 LINE L2 -10 3262 3141 763 225 31 0 chr6 41785 41945 -189237609 + MER20 DNA MER1_type 55 219 0 2302 88 0 0 chr6 42609 42904 -189236650 - AluSx SINE Alu -17 295 1 22 0 0 0 chr6 42910 42932 -189236622 + AT_rich Low_complexity Low_complexity 1 22 0 230 341 40 74 chr6 43315 43491 -189236063 - MIR3 SINE MIR -26 182 13 479 323 183 34 chr6 43843 44286 -189235268 - L2 LINE L2 0 3313 2805 308 232 158 0 chr6 44281 44376 -189235178 - L2 LINE L2 0 3313 3204 * 423 299 176 25 chr6 47183 47507 -189232047 - L1ME4a LINE L1 -5 6116 5744 307 351 114 8 chr6 47564 47695 -189231859 - L2 LINE L2 -28 3244 3100 198 50 75 0 chr6 47844 47884 -189231670 + CT-rich Low_complexity Low_complexity 5 47 0 359 270 81 0 chr6 49096 49207 -189230347 + MER34B LTR ERV1 5 124 -441 387 283 23 45 chr6 49304 49569 -189229985 + MER34B LTR ERV1 304 562 -3 338 222 36 82 chr6 49631 49825 -189229729 + MER34B-int LTR ERV1 69 253 -6078 340 191 43 21 chr6 50170 50264 -189229290 + MER34B-int LTR ERV1 1299 1394 -4937 3057 139 33 4 chr6 50359 50878 -189228676 - MSTA-int LTR MaLR -1117 534 1 2549 150 26 5 chr6 50878 51297 -189228257 - MSTA LTR MaLR 0 428 1 7918 187 52 43 chr6 51297 53297 -189226257 + MER34B-int LTR ERV1 4314 6331 0 261 193 174 73 chr6 53301 53410 -189226144 + MER34B LTR ERV1 5 124 -441 22 35 0 0 chr6 56463 56492 -189223062 + AT_rich Low_complexity Low_complexity 1 29 0 206 225 0 0 chr6 56587 56627 -189222927 + L2 LINE L2 3229 3268 -4 1101 133 0 44 chr6 57960 58141 -189221413 + AluSg/x SINE Alu 140 312 0 23 0 0 0 chr6 59002 59025 -189220529 + AT_rich Low_complexity Low_complexity 1 23 0 2454 90 0 0 chr6 59197 59498 -189220056 - AluSg SINE Alu -9 301 1 183 80 0 0 chr6 59971 59996 -189219558 + (CCCTAA)n Simple_repeat Simple_repeat 5 29 0 2025 128 0 7 chr6 62726 63007 -189216547 - AluSx SINE Alu -33 279 1 350 305 32 7 chr6 64458 64612 -189214942 - MER103 DNA DNA -1 165 8 539 245 111 67 chr6 64901 64938 -189214616 + L1ME4a LINE L1 5852 5886 -235 225 0 0 0 chr6 64938 64963 -189214591 + (TG)n Simple_repeat Simple_repeat 2 26 0 539 245 111 67 chr6 64963 65178 -189214376 + L1ME4a LINE L1 5886 6115 -6 24 53 0 0 chr6 66235 66273 -189213281 + AT_rich Low_complexity Low_complexity 1 38 0 291 297 145 22 chr6 67157 67295 -189212259 - MIR3 SINE MIR -28 180 26 432 329 7 7 chr6 70136 70273 -189209281 + MER5A DNA MER1_type 44 180 -9 1322 169 99 51 chr6 70922 71195 -189208359 - AluJo SINE Alu -20 292 7 224 293 12 49 chr6 71732 71896 -189207658 + GA-rich Low_complexity Low_complexity 1 158 0 21 36 0 0 chr6 72195 72223 -189207331 + GC_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr6 72281 72302 -189207252 + GC_rich Low_complexity Low_complexity 1 21 0 3737 155 22 10 chr6 73774 74466 -189205088 - L1MB3 LINE L1 -1 6182 5483 358 331 25 13 chr6 74641 74798 -189204756 - MIR SINE MIR -102 160 2 352 299 80 7 chr6 75047 75184 -189204370 - MIR SINE MIR -45 217 71 324 274 202 0 chr6 75242 75366 -189204188 + MIR SINE MIR 106 254 -8 1159 199 50 66 chr6 75371 75733 -189203821 - MLT1A2 LTR MaLR 0 374 19 28 29 0 0 chr6 75857 75892 -189203662 + AT_rich Low_complexity Low_complexity 1 35 0 2105 145 0 0 chr6 75991 76281 -189203273 - AluSx SINE Alu -22 290 1 22 35 0 0 chr6 76376 76405 -189203149 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr6 77156 77183 -189202371 + (T)n Simple_repeat Simple_repeat 1 27 0 7894 146 98 28 chr6 78847 80434 -189199120 - pTR5 LTR ERV1 0 2438 741 963 236 106 7 chr6 80683 80967 -189198587 - MER63 DNA MER1_type -74 986 675 247 328 74 16 chr6 82942 83064 -189196490 - L3 LINE CR1 -467 1110 982 702 223 37 115 chr6 83901 84257 -189195297 - MER33 DNA MER1_type -6 318 1 203 331 70 21 chr6 84274 84416 -189195138 + MIR SINE MIR 43 191 -71 462 178 0 40 chr6 84722 84823 -189194731 + L1MC2 LINE L1 6248 6344 0 480 241 14 148 chr6 84828 85044 -189194510 - MER91B DNA MER1_type -2 188 2 1085 143 26 0 chr6 86151 86340 -189193214 - L1PA16 LINE L1 -9 6157 5964 1223 231 21 37 chr6 86572 87087 -189192467 + L1ME1 LINE L1 5327 5997 -169 1994 126 7 37 chr6 87200 87521 -189192033 + AluSx SINE Alu 1 312 0 4190 142 80 40 chr6 88454 89772 -189189782 - pTR5 LTR ERV1 0 2438 743 232 241 215 0 chr6 90923 91002 -189188552 + MARNA DNA Mariner 295 390 -196 2714 178 21 55 chr6 91104 91727 -189187827 - L1MB3 LINE L1 -20 6163 5562 483 261 112 2 chr6 92269 92436 -189187118 - MIR SINE MIR -51 157 17 221 215 0 13 chr6 93948 94027 -189185527 + CT-rich Low_complexity Low_complexity 2 79 0 * 601 151 30 0 chr6 94008 94174 -189185380 + (CATCC)n Simple_repeat Simple_repeat 2 172 0 475 158 39 0 chr6 94207 94334 -189185220 + (CATCC)n Simple_repeat Simple_repeat 4 135 0 812 114 25 0 chr6 94361 94519 -189185035 + (CATCC)n Simple_repeat Simple_repeat 5 166 0 461 154 9 0 chr6 94535 94645 -189184909 + (CATCC)n Simple_repeat Simple_repeat 3 113 0 267 315 23 39 chr6 94779 94909 -189184645 + MLT1I LTR MaLR 59 186 -223 2173 109 3 3 chr6 96399 96701 -189182853 - AluSx SINE Alu -10 302 1 1419 130 0 0 chr6 97994 98219 -189181335 + AluSg/x SINE Alu 91 315 0 218 302 190 9 chr6 98352 98468 -189181086 + MIR SINE MIR 59 195 -67 1536 191 34 49 chr6 101884 101940 -189177614 + MLT1B LTR MaLR 1 56 -334 2109 121 119 16 chr6 101940 102327 -189177227 + MSTC LTR MaLR 1 427 -1 1536 191 34 49 chr6 102327 102658 -189176896 + MLT1B LTR MaLR 56 382 -8 195 250 96 0 chr6 102695 102747 -189176807 - MIR3 SINE MIR -34 174 118 309 284 11 11 chr6 103138 103233 -189176321 - L2 LINE L2 -769 2545 2451 5451 128 25 22 chr6 103481 104670 -189174884 + pTR5 LTR ERV1 743 2088 -350 258 275 126 62 chr6 105622 105978 -189173576 - MLT1J2 LTR MaLR -19 431 53 2291 114 0 6 chr6 106944 107259 -189172295 + AluSq SINE Alu 1 313 0 309 244 52 44 chr6 107472 107607 -189171947 - L1ME4a LINE L1 -31 6090 5955 353 311 156 24 chr6 107656 107868 -189171686 - L1ME4a LINE L1 -252 5869 5630 200 327 100 0 chr6 109371 109481 -189170073 + L2 LINE L2 3190 3310 -3 500 354 48 9 chr6 109487 109716 -189169838 + L3 LINE CR1 1240 1477 -100 3988 144 36 14 chr6 109765 110537 -189169017 + L1MA9 LINE L1 5521 6309 -3 1772 263 121 24 chr6 110615 111645 -189167909 + L1MCc LINE L1 814 1983 -4958 217 49 0 49 chr6 111645 111686 -189167868 + (CA)n Simple_repeat Simple_repeat 2 40 0 1772 263 121 24 chr6 111686 111816 -189167738 + L1MCc LINE L1 1983 2099 -4842 665 218 8 0 chr6 111828 111961 -189167593 + Tigger7 DNA MER2_type 37 170 -2317 612 156 88 47 chr6 111966 112128 -189167426 + Tigger7 DNA MER2_type 2209 2382 -105 1044 215 102 93 chr6 112128 112589 -189166965 + MER4C LTR ERV1 1 465 0 612 156 88 47 chr6 112589 112618 -189166936 + Tigger7 DNA MER2_type 2382 2408 -79 331 296 37 0 chr6 112691 112799 -189166755 + Tigger7 DNA MER2_type 2370 2481 -6 312 307 57 45 chr6 112804 113068 -189166486 + L1MCc LINE L1 2297 2563 -4559 5978 88 20 18 chr6 113073 114172 -189165382 + L1PA8 LINE L1 5061 6168 -4 297 248 116 33 chr6 114176 114297 -189165257 + L1MCc LINE L1 2609 2739 -4383 2402 148 27 0 chr6 114297 114708 -189164846 + MSTA LTR MaLR 5 426 -2 6704 166 18 3 chr6 114708 115852 -189163702 + MSTA-int LTR MaLR 1 1161 -490 2273 177 55 39 chr6 115878 116184 -189163370 + MER6 DNA MER2_type 60 378 -487 2329 86 7 7 chr6 116184 116488 -189163066 + AluSc SINE Alu 5 308 -1 2273 177 55 39 chr6 116488 116673 -189162881 + MER6 DNA MER2_type 378 559 -306 1736 144 37 3 chr6 116864 117163 -189162391 + MER6 DNA MER2_type 557 865 0 3837 235 69 21 chr6 117164 118423 -189161131 + L1MCc LINE L1 3397 4716 -2225 265 284 196 0 chr6 119763 119865 -189159689 - MIR SINE MIR -54 208 87 439 226 29 80 chr6 120637 120774 -189158780 - pTR5 LTR ERV1 -2045 393 264 201 188 47 16 chr6 121272 121336 -189158218 + (CTGGGG)n Simple_repeat Simple_repeat 1 66 0 22 0 0 0 chr6 121358 121380 -189158174 + GC_rich Low_complexity Low_complexity 1 22 0 1810 81 146 0 chr6 122109 122370 -189157184 + AluSx SINE Alu 1 299 -13 472 262 25 8 chr6 122881 123003 -189156551 - L2 LINE L2 0 3313 3190 248 298 155 25 chr6 124182 124343 -189155211 + MIR SINE MIR 80 261 -1 315 312 28 0 chr6 125884 125993 -189153561 - MLT1I LTR MaLR -174 235 124 1737 239 73 14 chr6 126245 126763 -189152791 + MER44D DNA MER2_type 1 604 -1 687 343 92 13 chr6 127039 127418 -189152136 - LTR16A LTR ERVL -25 425 17 786 127 19 38 chr6 127524 127682 -189151872 + MER53 DNA DNA 1 155 -34 635 281 22 17 chr6 128297 128528 -189151026 - HERV16 LTR ERVL -3883 1113 882 208 351 35 9 chr6 134220 134334 -189145220 + L2 LINE L2 3197 3313 0 468 301 127 9 chr6 134460 134673 -189144881 + L1ME4a LINE L1 5688 5925 -196 1846 111 53 4 chr6 135027 135289 -189144265 - AluSg SINE Alu -2 308 34 3640 171 56 8 chr6 136173 136910 -189142644 - L1MA8 LINE L1 -6 6285 5514 2484 82 0 22 chr6 137279 137595 -189141959 - AluSc SINE Alu 0 309 1 2200 254 89 7 chr6 137688 138386 -189141168 - L1MC4a LINE L1 -307 7501 6747 194 270 0 32 chr6 139746 139809 -189139745 - L2 LINE L2 -20 3293 3233 327 264 72 1 chr6 139850 140023 -189139531 - L1MC3 LINE L1 -759 7026 6808 291 256 128 0 chr6 140345 140431 -189139123 + MIR SINE MIR 166 262 0 452 243 3 5 chr6 140431 141043 -189138511 + (CTG)n Simple_repeat Simple_repeat 1 611 0 495 235 0 0 chr6 141068 141349 -189138205 + (CTG)n Simple_repeat Simple_repeat 1 281 0 504 232 0 0 chr6 141361 141538 -189138016 + (CTG)n Simple_repeat Simple_repeat 2 178 0 462 245 0 0 chr6 141553 141847 -189137707 + (CTG)n Simple_repeat Simple_repeat 1 294 0 459 237 0 0 chr6 141862 142039 -189137515 + (CTG)n Simple_repeat Simple_repeat 2 178 0 471 248 0 0 chr6 142054 142381 -189137173 + (CTG)n Simple_repeat Simple_repeat 1 327 0 507 233 0 0 chr6 142396 142656 -189136898 + (CTG)n Simple_repeat Simple_repeat 1 260 0 456 237 0 0 chr6 142670 142843 -189136711 + (CTG)n Simple_repeat Simple_repeat 2 174 0 326 287 11 0 chr6 142844 142938 -189136616 + (CTA)n Simple_repeat Simple_repeat 2 96 0 317 316 105 26 chr6 143611 143877 -189135677 + Charlie7 DNA MER1_type 400 686 -1926 835 181 18 0 chr6 144499 144670 -189134884 - L1MA8 LINE L1 -69 6222 6049 272 141 99 14 chr6 144666 144737 -189134817 + L1MA8 LINE L1 6209 6285 -6 * 2123 117 0 0 chr6 144999 145289 -189134265 + AluSc SINE Alu 1 290 -19 416 259 43 9 chr6 146007 146123 -189133431 + MIR SINE MIR 32 151 -111 214 246 17 39 chr6 146225 146404 -189133150 + (TATG)n Simple_repeat Simple_repeat 4 178 0 426 338 12 12 chr6 146450 146610 -189132944 + (TG)n Simple_repeat Simple_repeat 1 160 0 728 200 92 0 chr6 147739 147934 -189131620 - MER20 DNA MER1_type -6 213 1 1131 231 60 36 chr6 147995 148312 -189131242 + L1MB7 LINE L1 5812 6141 -43 1929 91 4 0 chr6 148312 148554 -189131000 - AluSp SINE Alu -10 303 61 1131 231 60 36 chr6 148554 148600 -189130954 + L1MB7 LINE L1 6141 6184 0 315 0 0 0 chr6 149091 149126 -189130428 + (A)n Simple_repeat Simple_repeat 1 35 0 347 325 162 0 chr6 155988 156179 -189123375 + MIR SINE MIR 33 254 -8 2291 109 0 3 chr6 157246 157549 -189122005 - AluSq SINE Alu -11 302 1 2042 146 0 0 chr6 158732 159012 -189120542 + AluSx SINE Alu 1 280 -32 1736 142 110 23 chr6 160385 160695 -189118859 - MER1B DNA MER1_type 0 337 1 472 298 7 0 chr6 164557 164708 -189114846 + (CA)n Simple_repeat Simple_repeat 1 152 0 231 287 20 31 chr6 166652 166771 -189112783 - MER5B DNA MER1_type -1 177 71 219 304 0 0 chr6 167340 167409 -189112145 - MIR SINE MIR 0 262 194 315 0 0 0 chr6 167447 167482 -189112072 + (TG)n Simple_repeat Simple_repeat 2 36 0 996 155 23 76 chr6 168159 168402 -189111152 - L1MA6 LINE L1 0 6300 6071 2140 96 45 3 chr6 168402 168694 -189110860 + AluSx SINE Alu 1 304 -8 996 155 23 76 chr6 168694 168714 -189110840 - L1MA6 LINE L1 -229 6071 6051 197 319 14 14 chr6 169166 169238 -189110316 + MIR SINE MIR 43 114 -94 1799 179 3 16 chr6 169321 169629 -189109925 + AluJb SINE Alu 1 304 -8 267 306 0 0 chr6 170197 170269 -189109285 + (CA)n Simple_repeat Simple_repeat 1 72 0 226 267 163 0 chr6 170617 170703 -189108851 + Charlie8 DNA MER1_type 4 103 -2314 242 279 163 0 chr6 171324 171410 -189108144 - Charlie8 DNA MER1_type -2314 103 4 238 220 250 20 chr6 174543 174643 -189104911 - MIR SINE MIR -50 212 90 775 188 7 0 chr6 176126 176270 -189103284 + L1PB4 LINE L1 6000 6144 -12 208 229 84 48 chr6 176612 176695 -189102859 - MIR SINE MIR -120 142 57 1276 216 25 9 chr6 178088 178403 -189101151 + MER33 DNA MER1_type 5 324 0 231 302 54 20 chr6 180224 180373 -189099181 + LTR67 LTR ERVL 400 553 -4 194 222 0 22 chr6 181759 181804 -189097750 + L2 LINE L2 3223 3266 -6 1157 155 52 44 chr6 182196 182230 -189097324 - L1MB3 LINE L1 -9 6174 6142 2278 99 7 3 chr6 182230 182522 -189097032 + AluSg SINE Alu 1 293 -17 1157 155 52 44 chr6 182522 182739 -189096815 - L1MB3 LINE L1 -41 6142 5921 253 314 108 0 chr6 184890 184992 -189094562 + MER58B DNA MER1_type 189 301 -40 209 217 14 72 chr6 185241 185310 -189094244 + MIR SINE MIR 191 255 -7 300 53 0 0 chr6 188781 188819 -189090735 + (CA)n Simple_repeat Simple_repeat 2 39 0 279 221 53 18 chr6 189878 189991 -189089563 + (TATATG)n Simple_repeat Simple_repeat 2 118 0 261 279 15 0 chr6 189999 190067 -189089487 + L2 LINE L2 2221 2289 -1025 505 292 64 52 chr6 190242 190475 -189089079 - L1M4 LINE L1 -3659 2487 2252 226 368 78 32 chr6 190480 190763 -189088791 + L2 LINE L2 2524 2819 -495 212 250 0 0 chr6 191123 191167 -189088387 + L2 LINE L2 3262 3305 -8 21 0 0 0 chr6 192893 192914 -189086640 + AT_rich Low_complexity Low_complexity 1 21 0 449 324 48 2 chr6 193072 193323 -189086231 - L1MC4a LINE L1 -304 5817 5664 182 274 0 0 chr6 195807 195858 -189083696 + MIR SINE MIR 31 81 -181 208 246 101 14 chr6 196215 196284 -189083270 + L2 LINE L2 3235 3309 -4 369 319 9 9 chr6 196406 196522 -189083032 + L1ME4a LINE L1 5493 5608 -513 196 352 63 13 chr6 196581 196740 -189082814 + MIR3 SINE MIR 29 195 -13 22 0 0 0 chr6 199064 199086 -189080468 + AT_rich Low_complexity Low_complexity 1 22 0 2707 36 0 0 chr6 200347 200651 -189078903 - AluY SINE Alu -7 304 1 900 247 109 31 chr6 200694 201107 -189078447 + LTR56 LTR ERV1 1 445 0 23 0 0 0 chr6 201299 201322 -189078232 + AT_rich Low_complexity Low_complexity 1 23 0 2043 129 0 7 chr6 201789 202114 -189077440 + AluSx SINE Alu 1 312 0 336 264 112 0 chr6 202123 202248 -189077306 + L1ME4a LINE L1 5813 5951 -170 360 0 0 0 chr6 202328 202368 -189077186 + (TG)n Simple_repeat Simple_repeat 2 41 0 183 219 49 0 chr6 202436 202477 -189077077 - MER5A DNA MER1_type -105 84 42 327 300 36 21 chr6 202708 202848 -189076706 + LTR56 LTR ERV1 1 142 -303 582 225 23 0 chr6 203242 203371 -189076183 - L1MB7 LINE L1 -13 6171 6040 261 252 17 9 chr6 204680 204795 -189074759 + GA-rich Low_complexity Low_complexity 2 117 0 201 271 0 0 chr6 205412 205460 -189074094 + L2 LINE L2 3266 3313 0 258 208 65 13 chr6 205746 205823 -189073731 + L1MB3 LINE L1 5574 5654 -467 2415 171 27 5 chr6 206923 207367 -189072187 + L1MB3 LINE L1 5729 6182 -1 187 234 52 52 chr6 208105 208182 -189071372 - MER5A DNA MER1_type 0 189 113 439 189 189 33 chr6 208978 209246 -189070308 + MER31B LTR ERV1 4 389 -77 230 279 0 15 chr6 209227 209295 -189070259 + MER67D LTR ERV1 440 506 -8 * 193 277 11 53 chr6 209413 209507 -189070047 - L2 LINE L2 -43 3229 3140 22 56 0 0 chr6 210094 210130 -189069424 + AT_rich Low_complexity Low_complexity 1 36 0 315 254 296 14 chr6 211043 211256 -189068298 + LTR67 LTR ERVL 277 549 -8 210 305 160 25 chr6 211530 211730 -189067824 + L2 LINE L2 2597 2823 -491 329 250 10 21 chr6 211861 211957 -189067597 - Charlie8 DNA MER1_type -2298 119 25 194 219 344 44 chr6 212965 213125 -189066429 + L2 LINE L2 2931 3138 -175 212 328 16 0 chr6 213173 213234 -189066320 + L2 LINE L2 3172 3233 -39 919 215 75 5 chr6 214357 214557 -189064997 + MER20 DNA MER1_type 2 215 -4 222 175 38 138 chr6 214736 214816 -189064738 - MIR SINE MIR -70 192 121 202 261 46 31 chr6 214803 214868 -189064686 + MIR3 SINE MIR 140 205 -3 * 249 203 55 78 chr6 215097 215225 -189064329 - 7SK RNA RNA -68 125 1 437 242 93 43 chr6 215574 215735 -189063819 + MIR SINE MIR 7 175 -87 203 324 176 7 chr6 216064 216200 -189063354 + MIR SINE MIR 63 221 -41 1784 151 0 77 chr6 216224 216548 -189063006 - AluJb SINE Alu -13 299 1 1307 144 40 104 chr6 217274 217620 -189061934 + MER33 DNA MER1_type 1 324 0 217 288 0 0 chr6 217684 217743 -189061811 + L2 LINE L2 3246 3304 -9 189 0 0 0 chr6 218223 218244 -189061310 + (A)n Simple_repeat Simple_repeat 1 21 0 2808 223 64 11 chr6 219917 220792 -189058762 + L1M4 LINE L1 2334 3254 -2892 882 249 75 59 chr6 220792 221109 -189058445 + L1M4 LINE L1 4838 5155 -991 627 269 35 101 chr6 221122 221695 -189057859 + L1MC4a LINE L1 6049 6583 -1225 207 222 42 14 chr6 221739 221811 -189057743 + (TA)n Simple_repeat Simple_repeat 2 75 0 451 299 61 19 chr6 221911 222175 -189057379 + L1MC5 LINE L1 7251 7525 -436 264 242 64 57 chr6 222287 222425 -189057129 + L1ME3 LINE L1 5979 6126 -38 23 65 0 16 chr6 223048 223081 -189056473 + AT_rich Low_complexity Low_complexity 1 34 -27 414 43 0 0 chr6 223081 223128 -189056426 - L1PA6 LINE L1 -8 6146 6100 23 65 0 16 chr6 223128 223156 -189056398 + AT_rich Low_complexity Low_complexity 34 61 0 353 371 103 23 chr6 224069 224371 -189055183 - L2 LINE L2 -23 3249 2924 25 31 0 0 chr6 224479 224511 -189055043 + AT_rich Low_complexity Low_complexity 1 32 0 2295 45 15 0 chr6 224571 224837 -189054717 - L1PA5 LINE L1 -4 6150 5881 293 385 60 26 chr6 224840 225074 -189054480 - L2 LINE L2 -606 2708 2467 795 190 92 6 chr6 225323 225486 -189054068 + AluSp SINE Alu 123 299 -14 873 297 60 39 chr6 225662 226097 -189053457 - L1ME3A LINE L1 -219 5951 5508 186 43 0 0 chr6 226132 226155 -189053399 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 4150 207 28 31 chr6 226155 227169 -189052385 - L1 LINE L1 -1449 4697 3687 1275 278 67 38 chr6 227219 227979 -189051575 - L1ME3A LINE L1 -2027 4119 3338 7333 154 30 11 chr6 227994 228125 -189051429 - L1MA8 LINE L1 -53 6238 6111 5229 107 18 1 chr6 228125 228854 -189050700 + L1MA2 LINE L1 5556 6303 -1 7333 154 30 11 chr6 228854 230836 -189048718 - L1MA8 LINE L1 -180 6111 4083 1995 214 76 15 chr6 230990 231466 -189048088 + LTR22 LTR ERVK 1 505 -4 6351 181 2 7 chr6 231506 232540 -189047014 + L1PA15-16 LINE L1 2 1030 -5819 2763 111 24 0 chr6 232540 232953 -189046601 + L1P4 LINE L1 5268 5690 -478 2118 128 0 0 chr6 232955 233245 -189046309 + AluSq SINE Alu 1 290 -23 374 121 15 0 chr6 233245 233311 -189046243 + (TA)n Simple_repeat Simple_repeat 2 68 0 228 159 0 0 chr6 233313 233357 -189046197 - LTR66 LTR ERVL -169 441 398 2395 121 17 15 chr6 233376 233847 -189045707 + L1PA8 LINE L1 5648 6077 -77 349 198 83 10 chr6 233826 233922 -189045632 + L1PA8 LINE L1 5946 6048 -124 * 351 214 61 10 chr6 233901 233999 -189045555 + L1PA8 LINE L1 5946 6048 -124 * 367 204 61 10 chr6 233978 234076 -189045478 + L1PA8 LINE L1 5946 6048 -124 346 214 61 10 chr6 234055 234153 -189045401 + L1PA8 LINE L1 5946 6048 -124 * 339 214 71 10 chr6 234132 234230 -189045324 + L1PA8 LINE L1 5946 6049 -123 * 335 239 61 10 chr6 234208 234382 -189045172 + L1PA8 LINE L1 5927 6048 -124 * 357 167 62 42 chr6 234361 234438 -189045116 + L1PA8 LINE L1 5946 6027 -145 1435 134 28 0 chr6 234438 234654 -189044900 + L1PA10 LINE L1 5946 6167 -1 357 167 62 42 chr6 234654 234672 -189044882 + L1PA8 LINE L1 6027 6043 -129 585 236 82 73 chr6 234679 235116 -189044438 - L1MEd LINE L1 -4971 1148 708 309 261 23 11 chr6 235123 235211 -189044343 + GA-rich Low_complexity Low_complexity 3 91 0 819 51 0 0 chr6 235297 235395 -189044159 + L1PA5 LINE L1 6055 6152 -2 3171 205 73 11 chr6 235842 236672 -189042882 + L1 LINE L1 2939 3820 -2326 467 273 86 0 chr6 236679 236818 -189042736 + ERVL LTR ERVL 1690 1840 -3924 1847 224 33 0 chr6 236831 237290 -189042264 + L1MA7 LINE L1 3179 3652 -2494 6234 26 1 0 chr6 237306 238027 -189041527 - L1PA4 LINE L1 -180 5975 5254 1508 51 6 0 chr6 238027 238205 -189041349 + L1PA4 LINE L1 5977 6155 0 5289 160 34 33 chr6 238224 239308 -189040246 + L1MA7 LINE L1 3663 4747 -1399 32534 103 16 58 chr6 240482 246902 -189032652 + L1PA7 LINE L1 12 6153 -1 5530 153 51 12 chr6 247650 249155 -189030399 + L1MA7 LINE L1 4736 6287 -4 1262 238 111 31 chr6 249430 250097 -189029457 + L1M4 LINE L1 3559 4514 -1632 394 311 68 15 chr6 253038 253170 -189026384 - MIR3 SINE MIR -40 168 30 347 347 7 20 chr6 255147 255297 -189024257 + MIR SINE MIR 1 148 -114 250 184 0 0 chr6 255305 255354 -189024200 + L1MA4 LINE L1 6055 6103 -197 1303 150 4 4 chr6 255370 255617 -189023937 + L1MA4 LINE L1 6049 6295 -5 275 234 36 117 chr6 255666 255803 -189023751 + MIR SINE MIR 136 261 -1 500 191 0 0 chr6 256649 256733 -189022821 + AluS SINE Alu 1 84 -228 180 132 0 113 chr6 257934 257987 -189021567 + L2 LINE L2 3267 3313 0 34 42 0 0 chr6 260178 260226 -189019328 + AT_rich Low_complexity Low_complexity 1 48 0 730 131 0 83 chr6 260895 261040 -189018514 + FLAM_C SINE Alu 1 133 0 227 275 87 47 chr6 261111 261260 -189018294 + HAL1b LINE L1 742 896 -452 453 307 170 37 chr6 261575 262269 -189017285 - L2 LINE L2 0 3313 2485 564 296 169 22 chr6 262283 262550 -189017004 + L2 LINE L2 900 1205 -2109 1139 280 51 42 chr6 262765 263006 -189016548 + MLT1H1 LTR MaLR 1 238 -317 1829 168 42 25 chr6 263006 263364 -189016190 - THE1B LTR MaLR 0 364 1 11090 105 18 8 chr6 263364 264928 -189014626 - THE1B-int LTR MaLR 0 1580 1 1973 147 39 33 chr6 264928 265288 -189014266 - THE1B LTR MaLR 0 364 3 1139 280 51 42 chr6 265288 265569 -189013985 + MLT1H1 LTR MaLR 237 530 -25 247 250 10 62 chr6 265569 265665 -189013889 + MLT1H1-int LTR MaLR 7 97 -1274 749 167 74 6 chr6 265968 266130 -189013424 - LTR64 LTR ERVK 0 558 386 2386 94 52 0 chr6 266132 266494 -189013060 + L1PA14 LINE L1 5781 6161 0 2255 106 0 3 chr6 266631 266933 -189012621 + AluSq SINE Alu 1 301 -12 192 222 111 0 chr6 267448 267502 -189012052 + L2 LINE L2 3254 3313 0 577 325 94 48 chr6 267593 268131 -189011423 + L2 LINE L2 2716 3271 -1 789 342 33 25 chr6 269252 269647 -189009907 + MLT1E LTR MaLR 22 419 -174 527 303 92 43 chr6 269748 270213 -189009341 + L1MEd LINE L1 347 834 -5285 283 233 194 0 chr6 270887 270990 -189008564 - L2 LINE L2 -871 2443 2321 228 255 57 38 chr6 271380 271486 -189008068 + MER65B LTR ERV1 262 369 -162 315 324 40 7 chr6 271606 271754 -189007800 - L1M4 LINE L1 -2470 3676 3524 1207 289 70 13 chr6 271918 272577 -189006977 + L2 LINE L2 2616 3309 -4 490 223 16 31 chr6 272577 272770 -189006784 + L1 LINE L1 3794 3983 -2163 430 278 155 63 chr6 272770 273153 -189006401 + L1 LINE L1 4508 4925 -1221 1710 224 37 26 chr6 273156 273646 -189005908 + MLT1D LTR MaLR 1 495 -10 226 172 92 69 chr6 273647 273734 -189005820 + L1 LINE L1 4924 5012 -1134 846 284 76 29 chr6 273928 274586 -189004968 + L1ME3A LINE L1 5259 5947 -223 203 286 12 12 chr6 274940 275024 -189004530 + (TA)n Simple_repeat Simple_repeat 1 84 0 2166 123 29 45 chr6 275112 275493 -189004061 - THE1C LTR MaLR 0 375 1 419 56 112 0 chr6 276516 276659 -189002895 + (TA)n Simple_repeat Simple_repeat 2 160 0 2495 57 0 0 chr6 276793 277089 -189002465 - AluY SINE Alu -15 296 1 39 68 0 0 chr6 277161 277235 -189002319 + AT_rich Low_complexity Low_complexity 1 74 0 245 164 0 18 chr6 278598 278653 -189000901 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 518 146 0 0 chr6 278692 278788 -189000766 + L1MA5 LINE L1 6200 6295 -5 191 146 24 0 chr6 278931 278972 -189000582 + (TA)n Simple_repeat Simple_repeat 1 42 0 523 257 0 9 chr6 279247 279360 -189000194 + L2 LINE L2 3197 3308 -5 506 382 40 23 chr6 279371 279922 -188999632 + L2 LINE L2 2710 3270 -2 1953 167 13 0 chr6 280085 280385 -188999169 + AluJb SINE Alu 1 304 -8 679 202 21 5 chr6 281558 281746 -188997808 + L1MA4A LINE L1 6112 6302 -1 1291 205 39 35 chr6 281748 282506 -188997048 + L1M4c LINE L1 1451 2302 -4082 21 36 0 0 chr6 282640 282668 -188996886 + AT_rich Low_complexity Low_complexity 1 28 0 369 242 158 33 chr6 283055 283175 -188996379 - L2 LINE L2 -1 3312 3178 1992 130 0 0 chr6 283289 283559 -188995995 - AluSx SINE Alu -42 270 1 285 261 39 78 chr6 284000 284105 -188995449 - L2 LINE L2 -5 3308 3209 2343 107 0 0 chr6 284105 284413 -188995141 - AluSq SINE Alu -5 308 1 285 261 39 78 chr6 284413 284460 -188995094 - L2 LINE L2 -104 3209 3162 1837 113 3 65 chr6 284900 285193 -188994361 - AluSx SINE Alu -1 311 37 716 119 0 18 chr6 285195 285304 -188994250 - FLAM_C SINE Alu -8 135 29 688 158 0 0 chr6 285308 285409 -188994145 + FLAM_C SINE Alu 3 103 -40 874 206 25 0 chr6 285410 285516 -188994038 + L1MB4 LINE L1 1123 1225 -5104 2247 100 3 23 chr6 285516 285825 -188993729 + AluSg SINE Alu 1 303 -7 874 206 25 0 chr6 285825 286261 -188993293 + L1MB4 LINE L1 1225 2091 -4238 444 150 13 8 chr6 286276 286511 -188993043 + AluSq SINE Alu 1 313 0 2141 192 56 50 chr6 289303 289400 -188990154 - L1MC3 LINE L1 -662 7123 7028 4927 28 0 0 chr6 289400 289972 -188989582 - L1PA3 LINE L1 0 6155 5584 2141 192 56 50 chr6 289972 290495 -188989059 - L1MC3 LINE L1 -757 7028 6499 1905 162 0 13 chr6 290641 290944 -188988610 - AluSx SINE Alu -13 299 1 1442 244 98 22 chr6 290968 291643 -188987911 - L1ME2 LINE L1 -218 5946 5214 21 0 0 0 chr6 292555 292576 -188986978 + AT_rich Low_complexity Low_complexity 1 21 0 8483 209 47 29 chr6 292752 293324 -188986230 + L1MB4 LINE L1 2606 3166 -3196 2187 102 0 0 chr6 293324 293634 -188985920 - AluSx SINE Alu 0 310 1 8483 209 47 29 chr6 293634 293798 -188985756 + L1MB4 LINE L1 3166 3326 -3036 2251 115 0 0 chr6 293798 294093 -188985461 + AluSc SINE Alu 1 295 -14 8483 209 47 29 chr6 294093 295725 -188983829 + L1MB4 LINE L1 3326 4927 -1435 2288 89 0 4 chr6 295725 296066 -188983488 - AluY SINE Alu 0 342 3 8483 209 47 29 chr6 296066 296246 -188983308 + L1MB4 LINE L1 4927 5102 -1260 1548 167 61 10 chr6 296246 296540 -188983014 + L1MC1 LINE L1 6016 6324 -9 8483 209 47 29 chr6 296540 297667 -188981887 + L1MB4 LINE L1 5102 6361 -1 1444 104 54 14 chr6 297978 298199 -188981355 + MER30 DNA MER1_type 1 230 0 336 231 90 0 chr6 298301 298379 -188981175 + L2 LINE L2 3225 3309 -4 819 125 0 0 chr6 298726 298854 -188980700 + L1PA16 LINE L1 5698 5825 -341 1384 179 0 21 chr6 298858 299092 -188980462 + AluJo SINE Alu 1 229 -83 1827 128 56 36 chr6 299118 299455 -188980099 + L1PA16 LINE L1 5814 6157 -9 24 32 0 0 chr6 300940 300971 -188978583 + AT_rich Low_complexity Low_complexity 1 31 0 2193 110 3 3 chr6 301034 301335 -188978219 + AluSx SINE Alu 1 301 -11 181 333 0 25 chr6 301630 301711 -188977843 + MIR3 SINE MIR 123 201 -7 494 267 23 80 chr6 302906 302933 -188976621 - MIR3 SINE MIR -27 181 154 1522 177 83 3 chr6 302933 303221 -188976333 + AluJo SINE Alu 1 311 -1 494 267 23 80 chr6 303221 303369 -188976185 - MIR3 SINE MIR -54 154 16 2296 101 0 0 chr6 304029 304325 -188975229 + AluSx SINE Alu 1 296 -16 6363 196 39 54 chr6 306118 306258 -188973296 + L1MB7 LINE L1 3443 3584 -2600 2286 85 3 0 chr6 306258 306553 -188973001 - AluSp SINE Alu -15 298 3 6363 196 39 54 chr6 306553 307773 -188971781 + L1MB7 LINE L1 3584 4820 -1364 4120 102 17 107 chr6 307773 308221 -188971333 + L1MA3 LINE L1 5603 5953 -352 2222 97 0 3 chr6 308221 308519 -188971035 + AluSx SINE Alu 5 301 -11 4120 102 17 107 chr6 308519 308843 -188970711 + L1MA3 LINE L1 5953 6305 0 6363 196 39 54 chr6 308843 309570 -188969984 + L1MB7 LINE L1 4820 5484 -700 2059 90 32 0 chr6 309570 309849 -188969705 + AluSg SINE Alu 1 288 -22 6363 196 39 54 chr6 309849 310540 -188969014 + L1MB7 LINE L1 5484 6184 0 1607 111 0 0 chr6 310806 311031 -188968523 - AluSg/x SINE Alu 0 312 88 337 195 39 0 chr6 311861 311938 -188967616 + MER116 DNA Mariner 1 80 0 975 204 91 18 chr6 312227 312501 -188967053 - LTR37A LTR ERV1 -35 391 98 443 224 24 0 chr6 312549 312634 -188966920 - Tigger2 DNA MER2_type 0 2718 2632 10661 134 8 5 chr6 312654 315410 -188964144 - L1MA3 LINE L1 0 6305 3540 2332 104 28 11 chr6 315410 315766 -188963788 - Tigger2 DNA MER2_type -77 2641 2280 468 159 0 0 chr6 315764 315833 -188963721 - Tigger2 DNA MER2_type -2649 69 1 * 183 297 203 0 chr6 316370 316444 -188963110 - MIR SINE MIR -56 206 118 467 226 63 95 chr6 316509 316591 -188962963 - ORSL DNA AcHobo -4 271 188 2319 75 3 3 chr6 316591 316897 -188962657 + AluSp SINE Alu 1 306 -7 467 226 63 95 chr6 316897 317066 -188962488 - ORSL DNA AcHobo -87 188 28 508 273 130 19 chr6 317608 317762 -188961792 + MIR3 SINE MIR 31 201 -7 1740 122 44 7 chr6 318717 318987 -188960567 - AluSx SINE Alu -3 309 30 926 141 224 0 chr6 319000 319192 -188960362 + L1MA4A LINE L1 6063 6297 -6 2296 72 3 0 chr6 319971 320264 -188959290 + AluSq SINE Alu 1 294 -19 506 291 62 39 chr6 320265 320622 -188958932 - L1ME4a LINE L1 -234 5887 5523 350 281 0 0 chr6 321657 321753 -188957801 + GA-rich Low_complexity Low_complexity 1 96 0 308 62 0 21 chr6 321755 321803 -188957751 + (GGGAGA)n Simple_repeat Simple_repeat 1 47 0 665 169 0 25 chr6 321911 322071 -188957483 + CT-rich Low_complexity Low_complexity 2 157 0 2145 131 0 0 chr6 322280 322592 -188956962 + AluSx SINE Alu 1 312 0 189 259 52 0 chr6 323190 323248 -188956306 + MIR SINE MIR 80 140 -122 2067 103 0 7 chr6 323319 323601 -188955953 - AluSg SINE Alu -30 280 1 2130 115 3 0 chr6 323635 323940 -188955614 + AluSg SINE Alu 1 306 -4 200 128 0 26 chr6 323976 324015 -188955539 + (TTA)n Simple_repeat Simple_repeat 1 38 0 200 302 40 79 chr6 324267 324393 -188955161 + MIR3 SINE MIR 15 135 -73 1357 205 160 18 chr6 324393 324793 -188954761 - MLT1C LTR MaLR -7 460 4 209 297 62 0 chr6 324793 324857 -188954697 + MIR SINE MIR 121 188 -74 3824 90 13 26 chr6 325090 325624 -188953930 + MER1A DNA MER1_type 1 527 0 286 337 131 29 chr6 325687 325862 -188953692 + MIR3 SINE MIR 9 201 -7 2367 56 0 7 chr6 326420 326726 -188952828 + AluY SINE Alu 1 304 -7 462 322 132 60 chr6 327180 327583 -188951971 + L1MC4a LINE L1 5262 5733 -2075 432 97 0 0 chr6 327583 327645 -188951909 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 462 322 132 60 chr6 327645 327906 -188951648 + L1MC4a LINE L1 5733 5974 -1834 324 274 0 42 chr6 327831 327926 -188951628 - L1MC4 LINE L1 -1338 6704 6614 * 25 0 0 0 chr6 328950 328975 -188950579 + AT_rich Low_complexity Low_complexity 1 25 0 1994 103 46 0 chr6 329000 329282 -188950272 + AluSq SINE Alu 2 296 -17 201 304 14 0 chr6 329426 329495 -188950059 + CT-rich Low_complexity Low_complexity 4 73 0 270 257 257 0 chr6 329873 330021 -188949533 + MLT1L LTR MaLR 413 598 -17 1219 280 77 70 chr6 330372 331012 -188948542 + MER21B LTR ERV1 24 667 -196 196 288 72 39 chr6 331942 332066 -188947488 - MIR3 SINE MIR -54 154 51 367 281 92 12 chr6 332690 332854 -188946700 - MLT1L LTR MaLR -295 320 144 428 290 32 9 chr6 332854 333000 -188946554 - MER5B DNA MER1_type -4 174 32 2441 202 50 47 chr6 333511 334111 -188945443 + MER7C DNA MER2_type 1 602 0 2129 153 19 48 chr6 335382 335794 -188943760 + MER57A LTR ERV1 1 400 -3 673 243 93 4 chr6 337144 337391 -188942163 + L1MC4 LINE L1 7768 8036 -6 327 252 59 34 chr6 337399 337518 -188942036 + L1M4 LINE L1 4407 4528 -1618 542 218 58 13 chr6 337987 338143 -188941411 + MIR3 SINE MIR 36 198 -10 191 281 61 0 chr6 339330 339412 -188940142 - MIR SINE MIR -153 109 23 297 268 110 47 chr6 339657 339784 -188939770 - L2 LINE L2 -16 3256 3122 345 317 80 30 chr6 339874 340073 -188939481 - MIR SINE MIR -20 242 34 236 164 36 0 chr6 340910 340965 -188938589 + (TA)n Simple_repeat Simple_repeat 1 57 0 228 222 0 0 chr6 341072 341117 -188938437 - MER5A DNA MER1_type 0 189 145 2218 97 3 0 chr6 341223 341523 -188938031 + AluSq SINE Alu 1 301 -12 492 296 106 22 chr6 341713 341939 -188937615 + MIR SINE MIR 17 261 -1 482 316 11 27 chr6 342533 342720 -188936834 - MIR SINE MIR -1 261 78 4094 174 88 3 chr6 343344 344104 -188935450 - LTR1B LTR ERV1 0 826 2 2150 88 7 17 chr6 344643 344939 -188934615 + AluSq SINE Alu 1 293 -20 2747 200 48 2 chr6 344939 345540 -188934014 - L1MB3 LINE L1 -9 6174 5546 283 205 26 51 chr6 345808 345886 -188933668 + L1MC4 LINE L1 7785 7860 -182 214 208 42 0 chr6 348358 348406 -188931148 - MIR SINE MIR -96 166 117 244 258 32 0 chr6 349059 349121 -188930433 + MIR SINE MIR 82 145 -117 2067 116 0 0 chr6 349537 349845 -188929709 - AluSx SINE Alu 0 308 1 1906 138 3 20 chr6 349882 350186 -188929368 + AluSx SINE Alu 1 299 -13 281 179 0 75 chr6 350338 350405 -188929149 - MIR3 SINE MIR -53 155 94 260 223 27 115 chr6 350398 350525 -188929029 + L2 LINE L2 3138 3252 -20 * 1101 190 68 0 chr6 350525 350746 -188928808 - MER46A DNA MER2_type 0 236 1 260 223 27 115 chr6 350746 350766 -188928788 + L2 LINE L2 3252 3272 0 343 232 84 84 chr6 351058 351213 -188928341 + L1MCa LINE L1 1930 2084 -4342 837 198 77 0 chr6 352671 352853 -188926701 - MER20 DNA MER1_type -21 198 3 699 150 9 0 chr6 353168 353292 -188926262 + MER46A DNA MER2_type 107 333 0 220 216 27 95 chr6 353621 353695 -188925859 - L2 LINE L2 -3 3269 3201 204 272 67 77 chr6 354002 354197 -188925357 - L2 LINE L2 -870 2444 2252 357 202 46 55 chr6 354529 354638 -188924916 - MER5A DNA MER1_type 0 189 82 1301 209 116 15 chr6 354717 355113 -188924441 - L1MD2 LINE L1 -228 6131 5693 319 251 46 0 chr6 355183 355315 -188924239 - L1MB3 LINE L1 -691 5479 5337 2126 172 21 23 chr6 355320 355709 -188923845 + LTR45B LTR ERV1 4 391 -98 2203 113 3 10 chr6 356347 356649 -188922905 + AluSc SINE Alu 1 300 -9 1739 153 67 0 chr6 356767 357049 -188922505 + AluSx SINE Alu 1 301 -11 2304 86 7 10 chr6 358240 358531 -188921023 - AluSx SINE Alu -22 290 1 2294 105 16 0 chr6 358777 359081 -188920473 - AluSc SINE Alu 0 309 1 2239 121 0 0 chr6 359661 359959 -188919595 - AluSq SINE Alu -3 310 13 2155 136 0 0 chr6 360540 360834 -188918720 + AluSx SINE Alu 1 294 -18 928 148 0 13 chr6 360909 361267 -188918287 + (TCCA)n Simple_repeat Simple_repeat 1 530 0 317 217 0 130 chr6 361280 361418 -188918136 - L2 LINE L2 0 3313 3194 227 215 129 21 chr6 362110 362203 -188917351 + L1ME LINE L1 5830 5932 -189 1271 246 20 6 chr6 362244 362594 -188916960 - L1MB3 LINE L1 -1095 5051 4697 2406 98 0 0 chr6 362950 363247 -188916307 - AluSx SINE Alu -15 297 1 674 274 91 4 chr6 364078 364308 -188915246 - MIR SINE MIR -11 251 2 598 88 7 51 chr6 364363 364500 -188915054 + (CA)n Simple_repeat Simple_repeat 2 132 0 2153 108 7 3 chr6 364750 365047 -188914507 - AluSc SINE Alu -11 298 1 651 191 121 0 chr6 365424 365581 -188913973 + MER45A DNA AcHobo 3 178 0 1268 208 46 74 chr6 367133 367527 -188912027 + MLT1B LTR MaLR 1 383 -7 219 357 51 0 chr6 369058 369156 -188910398 + L2 LINE L2 3132 3234 -38 2380 60 0 23 chr6 369180 369480 -188910074 + AluY SINE Alu 1 293 -18 239 339 73 0 chr6 371127 371251 -188908303 + MIR SINE MIR 14 146 -116 748 207 22 137 chr6 371789 372059 -188907495 + MER8 DNA MER2_type 1 239 0 246 236 0 0 chr6 372108 372163 -188907391 - LTR40a LTR ERVL -24 495 441 598 252 119 54 chr6 372173 372451 -188907103 - LTR40c LTR ERVL -143 322 27 244 253 181 0 chr6 374785 374868 -188904686 - L3 LINE CR1 -124 1453 1356 2444 72 3 3 chr6 375456 375760 -188903794 - AluSp SINE Alu -9 304 1 4499 156 91 123 chr6 377091 378466 -188901088 - pTR5 LTR ERV1 -32 1683 831 5260 84 98 7 chr6 378466 379223 -188900331 + LTR12 LTR ERV1 1 826 0 4499 156 91 123 chr6 379223 380025 -188899529 - pTR5 LTR ERV1 -884 831 5 2127 130 3 3 chr6 380054 380361 -188899193 + AluSx SINE Alu 1 307 -5 2394 96 0 0 chr6 380428 380729 -188898825 - AluSg SINE Alu -9 301 1 2091 127 0 3 chr6 381300 381591 -188897963 - AluSq SINE Alu -23 290 1 300 302 86 43 chr6 381608 381747 -188897807 + HAL1b LINE L1 320 464 -884 226 153 71 24 chr6 381885 381970 -188897584 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 432 83 28 0 chr6 382342 382414 -188897140 - AluSp/q SINE Alu -2 311 238 2127 101 4 4 chr6 382414 382690 -188896864 - AluSp SINE Alu -37 276 1 2170 197 75 8 chr6 383167 383645 -188895909 - L1M1 LINE L1 -536 5764 5255 1505 181 44 0 chr6 383648 383963 -188895591 - L1M1 LINE L1 -1010 5136 4808 2101 139 45 31 chr6 384065 384424 -188895130 - THE1B LTR MaLR 0 364 1 11158 110 16 3 chr6 384424 385984 -188893570 - THE1B-int LTR MaLR 0 1580 1 2054 157 6 28 chr6 385984 386347 -188893207 - THE1A LTR MaLR 0 355 1 944 190 6 11 chr6 386373 386552 -188893002 - AluJo SINE Alu -17 295 118 803 164 0 21 chr6 386584 386724 -188892830 - AluJo SINE Alu -175 137 1 21 0 0 0 chr6 387594 387615 -188891939 + AT_rich Low_complexity Low_complexity 1 21 0 224 54 54 0 chr6 389159 389196 -188890358 + T-rich Low_complexity Low_complexity 3 41 0 375 208 66 9 chr6 389199 389305 -188890249 - L1MA9 LINE L1 -37 6275 6164 2245 118 0 7 chr6 389316 389622 -188889932 - AluSg SINE Alu -6 304 1 2127 98 0 69 chr6 390505 390823 -188888731 - AluSg SINE Alu -14 296 1 2409 84 0 3 chr6 391040 391349 -188888205 - AluY SINE Alu -3 308 1 1005 174 12 0 chr6 391860 392027 -188887527 + FAM SINE Alu 2 170 -5 725 220 84 5 chr6 392343 392534 -188887020 - MER46C DNA MER2_type -132 206 1 364 253 43 56 chr6 392558 392720 -188886834 - MIR SINE MIR -36 226 67 5808 94 44 14 chr6 393446 393497 -188886057 - L1PB1 LINE L1 -1 6150 6102 2088 86 75 0 chr6 393497 393777 -188885777 - AluY SINE Alu -10 301 1 5808 94 44 14 chr6 393777 394620 -188884934 - L1PB1 LINE L1 -49 6102 5231 2128 171 100 23 chr6 394746 395181 -188884373 - L1MB2 LINE L1 -2 6169 5692 2223 95 14 3 chr6 395181 395476 -188884078 + AluY SINE Alu 1 298 -13 2128 171 100 23 chr6 395476 395520 -188884034 - L1MB2 LINE L1 -479 5692 5653 765 155 88 52 chr6 395522 395716 -188883838 + L1 LINE L1 4111 4311 -1835 * 16401 76 11 5 chr6 395706 397506 -188882048 - L1PA7 LINE L1 -95 6059 4242 2496 78 0 0 chr6 397506 397814 -188881740 - AluY SINE Alu -3 308 1 16401 76 11 5 chr6 397814 398931 -188880623 - L1PA7 LINE L1 -1912 4242 3133 204 184 0 0 chr6 401265 401314 -188878240 + GA-rich Low_complexity Low_complexity 2 50 0 216 0 0 0 chr6 402196 402220 -188877334 + (A)n Simple_repeat Simple_repeat 1 24 0 257 255 18 0 chr6 402937 403029 -188876525 - MIR SINE MIR -60 148 54 824 276 18 5 chr6 403727 403948 -188875606 - MER58A DNA MER1_type 0 224 1 193 57 57 0 chr6 404076 404111 -188875443 + (TAGA)n Simple_repeat Simple_repeat 2 38 0 208 129 32 48 chr6 404297 404359 -188875195 + (TTTG)n Simple_repeat Simple_repeat 2 62 0 626 143 10 0 chr6 406271 406369 -188873185 - MER72 LTR ERV1 -623 99 1 573 266 16 11 chr6 406582 406770 -188872784 - L1MC/D LINE L1 -2020 5765 5577 2940 155 46 16 chr6 406775 407335 -188872219 - MER34C LTR ERV1 -2 583 7 1168 227 85 26 chr6 407346 407958 -188871596 - L1MC/D LINE L1 -745 5401 4898 523 217 9 0 chr6 407974 408080 -188871474 + LTR60 LTR ERV1 1 107 -479 1077 187 64 132 chr6 408116 408586 -188870968 + LTR60 LTR ERV1 106 543 -43 * 4128 176 36 60 chr6 408431 409812 -188869742 + TAR1 Satellite telomeric 1 1348 -237 1183 49 3 38 chr6 409812 410163 -188869391 + (TTAGGG)n Simple_repeat Simple_repeat 1 338 0 951 214 0 5 chr6 410181 410368 -188869186 - AluJb SINE Alu -10 302 117 388 226 39 49 chr6 410368 410470 -188869084 - MER8 DNA MER2_type -136 103 3 1671 181 0 7 chr6 410581 410879 -188868675 + AluJo SINE Alu 1 296 -16 2217 109 0 0 chr6 412266 412569 -188866985 + AluSg SINE Alu 1 303 -7 2244 65 14 0 chr6 413474 413749 -188865805 - AluSx SINE Alu -11 301 23 594 194 118 12 chr6 414406 414576 -188864978 + L1MD3 LINE L1 7798 7985 -10 703 88 51 8 chr6 416762 417003 -188862551 + (TA)n Simple_repeat Simple_repeat 1 251 0 481 126 0 99 chr6 417503 417614 -188861940 + L1MA3 LINE L1 6204 6303 -2 256 339 39 23 chr6 418776 418906 -188860648 - L2 LINE L2 0 3272 3141 200 267 22 56 chr6 419435 419525 -188860029 + MIR SINE MIR 65 151 -111 267 254 48 120 chr6 419657 419866 -188859688 + L2 LINE L2 3073 3266 -6 207 206 0 0 chr6 419875 419909 -188859645 + L2 LINE L2 3168 3201 -71 1533 265 167 39 chr6 420106 420981 -188858573 + L1ME2 LINE L1 100 1086 -4984 1080 247 44 16 chr6 420975 421291 -188858263 + L1ME2 LINE L1 5285 5609 -489 * 2551 40 3 3 chr6 421381 421681 -188857873 + AluY SINE Alu 1 300 -11 1236 175 4 43 chr6 421687 421921 -188857633 + AluJb SINE Alu 71 295 -17 1342 236 89 14 chr6 421921 422357 -188857197 + L1ME2 LINE L1 5630 6098 0 3432 168 46 27 chr6 423871 424604 -188854950 - L1MB8 LINE L1 0 6112 5366 1409 223 113 9 chr6 424604 425154 -188854400 - L1MB8 LINE L1 -940 5140 4508 849 58 53 0 chr6 426422 426593 -188852961 + (TA)n Simple_repeat Simple_repeat 1 180 0 909 51 28 22 chr6 426610 426788 -188852766 + (TA)n Simple_repeat Simple_repeat 2 180 0 267 150 0 0 chr6 426812 426872 -188852682 + (TA)n Simple_repeat Simple_repeat 2 61 0 410 323 56 0 chr6 427346 427507 -188852047 - MIR SINE MIR -75 187 18 387 0 0 0 chr6 428424 428467 -188851087 + (TG)n Simple_repeat Simple_repeat 2 44 0 285 205 90 13 chr6 431094 431172 -188848382 + L1ME LINE L1 13 96 -5974 1399 216 65 30 chr6 431838 432297 -188847257 - L1MB8 LINE L1 -2946 3134 2660 2755 249 73 46 chr6 432303 434080 -188845474 - L1MB8 LINE L1 -3528 2552 729 * 13058 29 9 2 chr6 434074 435652 -188843902 - L1P LINE L1 -1990 4156 2567 500 183 99 47 chr6 435648 435839 -188843715 - L1ME LINE L1 -5108 962 762 * 21 57 0 0 chr6 436475 436510 -188843044 + AT_rich Low_complexity Low_complexity 1 35 0 353 281 113 45 chr6 437349 437570 -188841984 + MIR SINE MIR 13 248 -14 2387 84 0 3 chr6 439988 440284 -188839270 - AluSc SINE Alu -14 295 1 1809 142 110 23 chr6 443674 443984 -188835570 + MER1B DNA MER1_type 1 337 0 2004 146 0 0 chr6 445357 445637 -188833917 - AluSx SINE Alu -32 280 1 2252 109 0 3 chr6 446820 447123 -188832431 + AluSq SINE Alu 1 302 -11 786 107 13 3 chr6 447300 447421 -188832133 + MSTA LTR MaLR 319 428 0 3300 141 33 2 chr6 447421 447940 -188831614 + MSTA-int LTR MaLR 1 535 -1116 371 190 40 30 chr6 448035 448135 -188831419 - MER34B-int LTR ERV1 -4937 1394 1294 390 216 36 82 chr6 448474 448668 -188830886 - MER34B-int LTR ERV1 -6078 253 69 474 258 106 43 chr6 448730 449052 -188830502 - MER34B LTR ERV1 -3 562 221 392 270 81 0 chr6 449092 449203 -188830351 - MER34B LTR ERV1 -441 124 5 198 50 75 0 chr6 450415 450455 -188829099 + GA-rich Low_complexity Low_complexity 5 47 0 251 351 114 8 chr6 450604 450735 -188828819 + L2 LINE L2 3100 3244 -28 300 261 203 51 chr6 450792 451087 -188828467 + L1ME4a LINE L1 5744 6083 -38 198 65 32 65 chr6 452059 452121 -188827433 + (TCTCC)n Simple_repeat Simple_repeat 1 60 0 * 823 75 43 12 chr6 452118 452279 -188827275 + (TCTCTG)n Simple_repeat Simple_repeat 3 168 0 402 38 53 61 chr6 452253 452384 -188827170 + (TCTCC)n Simple_repeat Simple_repeat 2 131 0 * 3048 216 66 7 chr6 452541 452818 -188826736 - MER44D DNA MER2_type -1890 597 338 1645 178 17 0 chr6 452818 453116 -188826438 - AluJb SINE Alu -8 304 2 3048 216 66 7 chr6 453116 453523 -188826031 - MER44D DNA MER2_type -2149 338 1 2252 118 7 0 chr6 455010 455314 -188824240 - AluSx SINE Alu -6 306 1 415 235 73 7 chr6 456740 456876 -188822678 + MIR SINE MIR 9 153 -109 591 200 14 48 chr6 457865 458010 -188821544 - MER4C LTR ERV1 -63 402 263 1239 180 74 77 chr6 458100 458450 -188821104 - MER4A LTR ERV1 -315 349 1 509 258 144 25 chr6 458452 458778 -188820776 - L1M4 LINE L1 -2931 3215 2851 823 153 24 0 chr6 458778 458902 -188820652 + FLAM_C SINE Alu 1 127 -16 294 249 99 128 chr6 458902 459280 -188820274 - L1M4 LINE L1 -3282 2864 2511 2171 110 7 0 chr6 459280 459571 -188819983 - AluSq SINE Alu -20 293 1 294 249 99 128 chr6 459571 459831 -188819723 - L1M4 LINE L1 -3635 2511 2245 321 222 58 24 chr6 460108 460526 -188819028 - L1MD2 LINE L1 0 7808 6165 2216 110 0 0 chr6 461117 461408 -188818146 + AluSg SINE Alu 1 291 -19 618 222 12 8 chr6 511419 511669 -188767885 + CT-rich Low_complexity Low_complexity 1 251 0 5060 172 5 5 chr6 511767 513297 -188766257 + L1P5 LINE L1 4262 5791 -360 290 140 35 0 chr6 513297 513354 -188766200 + (CATA)n Simple_repeat Simple_repeat 3 61 0 233 267 0 11 chr6 513354 513444 -188766110 + L1MC4 LINE L1 6614 6702 -1340 2800 103 0 20 chr6 513464 513854 -188765700 + L1PB1 LINE L1 5769 6150 -1 23 0 0 0 chr6 513854 513877 -188765677 + AT_rich Low_complexity Low_complexity 1 23 0 198 245 51 82 chr6 514041 514139 -188765415 + MIR SINE MIR 105 199 -63 391 275 17 0 chr6 514247 514367 -188765187 + L2 LINE L2 3192 3313 0 563 125 10 0 chr6 514391 514495 -188765059 + (TC)n Simple_repeat Simple_repeat 1 105 0 10028 115 7 8 chr6 514872 516770 -188762784 - L1PA10 LINE L1 -2 6166 4263 2009 154 3 3 chr6 516770 517081 -188762473 + AluSx SINE Alu 1 311 -1 10028 115 7 8 chr6 517081 517389 -188762165 - L1PA10 LINE L1 -1905 4263 3956 316 341 98 43 chr6 517892 518197 -188761357 - L3 LINE CR1 -547 1030 709 210 306 241 20 chr6 518206 518405 -188761149 - L3 LINE CR1 -979 598 356 12843 125 26 19 chr6 518697 519005 -188760549 - Tigger1 DNA MER2_type -370 2048 1743 2140 136 0 13 chr6 519005 519321 -188760233 - AluJo SINE Alu 0 312 1 12843 125 26 19 chr6 519321 521041 -188758513 - Tigger1 DNA MER2_type -675 1743 7 2381 91 0 0 chr6 521767 522063 -188757491 - AluSg SINE Alu -14 296 1 2052 133 3 0 chr6 522137 522467 -188757087 - AluSx SINE Alu 0 312 1 623 227 97 5 chr6 523170 523355 -188756199 + L1ME2 LINE L1 5963 6164 0 427 258 81 66 chr6 528089 528287 -188751267 - MER63A DNA MER1_type -9 201 1 229 338 90 7 chr6 528298 528443 -188751111 + L2 LINE L2 2089 2245 -1069 337 339 58 37 chr6 528568 528757 -188750797 - MIR SINE MIR -21 241 49 885 219 59 0 chr6 529799 530018 -188749536 - Tigger6 DNA MER2_type -2 1595 1364 4973 40 2 0 chr6 530018 530639 -188748915 - L1P LINE L1 -2696 3450 2829 3541 47 0 0 chr6 530639 531042 -188748512 + L1PA5 LINE L1 5748 6152 -2 371 254 123 0 chr6 531237 531367 -188748187 + MER63A DNA MER1_type 56 201 -9 21 71 0 0 chr6 533529 533571 -188745983 + AT_rich Low_complexity Low_complexity 1 42 0 624 222 90 21 chr6 535623 535812 -188743742 - L1ME2 LINE L1 0 6164 5963 264 267 89 30 chr6 536993 537128 -188742426 + MIR3 SINE MIR 39 181 -27 206 192 0 39 chr6 537797 537849 -188741705 + GA-rich Low_complexity Low_complexity 2 51 0 189 107 0 0 chr6 538190 538218 -188741336 + (CACCC)n Simple_repeat Simple_repeat 5 32 0 1276 199 101 136 chr6 540257 541288 -188738266 + L1MC5 LINE L1 6857 7851 -110 1891 153 10 3 chr6 544494 544794 -188734760 - AluJb SINE Alu -10 302 1 664 183 0 0 chr6 546655 546759 -188732795 - FRAM SINE Alu -17 159 56 505 94 10 83 chr6 547252 547381 -188732173 + L1PA8 LINE L1 6082 6172 0 744 315 27 10 chr6 547431 547723 -188731831 - L1MEc LINE L1 -2386 3829 3533 300 253 62 41 chr6 547726 547872 -188731682 - L1MEc LINE L1 -4519 1877 1729 418 259 53 35 chr6 547941 548111 -188731443 - L1MEc LINE L1 -5895 310 138 264 314 95 7 chr6 548430 548567 -188730987 - L3 LINE CR1 -1102 475 327 24 53 0 0 chr6 548589 548627 -188730927 + AT_rich Low_complexity Low_complexity 1 38 0 358 279 66 27 chr6 548896 549079 -188730475 - L1ME2 LINE L1 -314 5807 5618 343 293 44 79 chr6 549140 549369 -188730185 - L1ME2 LINE L1 -607 5557 5337 2478 78 3 0 chr6 549399 549706 -188729848 - AluSp SINE Alu -5 308 1 771 249 42 46 chr6 549770 549987 -188729567 + MIR SINE MIR 42 257 -5 26 50 0 0 chr6 550782 550822 -188728732 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr6 550946 550967 -188728587 + AT_rich Low_complexity Low_complexity 1 21 0 1696 194 0 10 chr6 553725 554024 -188725530 - MER2 DNA MER2_type -8 337 42 231 218 36 91 chr6 554078 554188 -188725366 - L2 LINE L2 -569 2745 2642 187 338 0 27 chr6 554253 554327 -188725227 - L2 LINE L2 -556 2758 2687 22 0 0 0 chr6 554864 554886 -188724668 + AT_rich Low_complexity Low_complexity 1 22 0 2027 143 20 64 chr6 555793 556185 -188723369 - THE1C LTR MaLR 0 375 1 297 323 60 39 chr6 557078 557310 -188722244 + HAL1 LINE L1 1120 1356 -1151 297 68 0 0 chr6 557389 557433 -188722121 + (GA)n Simple_repeat Simple_repeat 1 44 0 436 329 48 18 chr6 557439 557667 -188721887 + HAL1b LINE L1 358 592 -756 461 223 103 29 chr6 557912 558154 -188721400 + L1ME2 LINE L1 2942 3201 -2945 900 210 6 33 chr6 558158 558339 -188721215 + AluJo SINE Alu 113 288 -24 476 242 150 16 chr6 558357 560100 -188719454 + L1ME2 LINE L1 3209 5507 -659 1373 236 110 6 chr6 560544 561035 -188718519 + L1ME2 LINE L1 5623 6164 0 396 205 13 0 chr6 561621 561698 -188717856 + Tigger5 DNA MER2_type 1 78 -2245 293 200 12 71 chr6 561698 561758 -188717796 - Tigger5 DNA MER2_type -3 2320 2265 2245 103 3 0 chr6 561758 562058 -188717496 + AluSg1 SINE Alu 1 301 -8 293 200 12 71 chr6 562058 562082 -188717472 - Tigger5 DNA MER2_type -58 2265 2241 * 369 176 0 0 chr6 562078 562146 -188717408 + Tigger5 DNA MER2_type 2256 2323 0 1096 121 0 0 chr6 563072 563221 -188716333 - AluSq/x SINE Alu -164 149 1 673 262 43 24 chr6 563513 563886 -188715668 + L1MEd LINE L1 970 1249 -4882 449 283 135 74 chr6 563920 564918 -188714636 + L1MEd LINE L1 2579 3637 -2492 265 261 34 42 chr6 564918 565037 -188714517 + L1ME2 LINE L1 5834 5951 -227 1455 172 74 16 chr6 566188 566666 -188712888 + L1MA7 LINE L1 5749 6295 -5 2925 3 0 0 chr6 567832 568145 -188711409 + AluYb8 SINE Alu 1 313 -5 411 251 102 21 chr6 568681 568916 -188710638 + L1ME4a LINE L1 5631 5884 -237 316 235 29 73 chr6 569027 569163 -188710391 + L1ME4a LINE L1 5992 6121 0 2227 159 30 28 chr6 569462 569895 -188709659 + Tigger2a DNA MER2_type 1 434 0 211 263 165 45 chr6 569928 570061 -188709493 + MIR3 SINE MIR 4 152 -56 1204 228 71 50 chr6 574929 575393 -188704161 + LTR42 LTR ERVL 2 475 -20 476 306 135 5 chr6 575444 575666 -188703888 + L2 LINE L2 2178 2428 -886 1913 146 3 0 chr6 575895 576183 -188703371 - AluSx SINE Alu -23 289 1 206 312 9 18 chr6 576234 576343 -188703211 + (TA)n Simple_repeat Simple_repeat 2 109 0 243 103 0 0 chr6 576344 576383 -188703171 + (TG)n Simple_repeat Simple_repeat 2 40 0 2241 92 0 7 chr6 577012 577306 -188702248 - AluSg SINE Alu -18 292 1 273 299 133 88 chr6 580109 580304 -188699250 - L2 LINE L2 -24 3289 3104 2499 74 0 3 chr6 580304 580613 -188698941 + AluSc SINE Alu 1 308 -1 273 299 133 88 chr6 580613 580839 -188698715 - L2 LINE L2 -209 3104 2849 2223 101 3 16 chr6 581496 581804 -188697750 + AluSx SINE Alu 1 304 -8 384 229 47 84 chr6 583338 583552 -188696002 - Charlie5 DNA MER1_type 0 2624 2419 2386 92 0 3 chr6 583668 583974 -188695580 - AluSq SINE Alu -8 305 1 28 86 0 0 chr6 583975 584045 -188695509 + AT_rich Low_complexity Low_complexity 1 70 0 243 221 26 39 chr6 584322 584399 -188695155 - MER8 DNA MER2_type -162 77 2 2277 83 14 0 chr6 584558 584848 -188694706 - AluSc SINE Alu -15 294 1 318 243 111 62 chr6 586538 586781 -188692773 - L1ME4a LINE L1 -35 6086 5832 200 273 0 0 chr6 587369 587424 -188692130 + GA-rich Low_complexity Low_complexity 3 57 0 30 59 0 0 chr6 587897 587948 -188691606 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr6 588533 588555 -188690999 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 588992 589013 -188690541 + AT_rich Low_complexity Low_complexity 1 21 0 226 315 240 0 chr6 589193 589339 -188690215 - L2 LINE L2 -531 2783 2603 635 302 215 6 chr6 589620 590113 -188689441 + L2 LINE L2 2111 2706 -608 250 324 0 0 chr6 590255 590366 -188689188 + L2 LINE L2 2949 3059 -254 33 0 0 0 chr6 590425 590458 -188689096 + AT_rich Low_complexity Low_complexity 1 33 0 382 283 23 28 chr6 590520 590697 -188688857 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 814 262 74 68 chr6 591060 591571 -188687983 + MLT2B1 LTR ERVL 1 514 -6 2519 62 0 0 chr6 593094 593399 -188686155 - AluY SINE Alu -6 305 1 185 318 0 61 chr6 593504 593570 -188685984 - L2 LINE L2 -18 3295 3234 350 230 355 7 chr6 593580 593732 -188685822 - MIR SINE MIR 0 262 58 394 243 189 0 chr6 595228 595339 -188684215 - MIR SINE MIR -67 195 64 58 60 0 0 chr6 596606 596706 -188682848 + AT_rich Low_complexity Low_complexity 1 100 0 628 313 86 48 chr6 596747 597306 -188682248 - L1MC4a LINE L1 -1694 6114 5535 218 263 105 94 chr6 597631 597802 -188681752 - L2 LINE L2 -5 3308 3136 1726 92 78 163 chr6 597993 598150 -188681404 + MSTB LTR MaLR 7 176 -250 1581 109 17 0 chr6 598150 598389 -188681165 + MER75B DNA T2_type 1 243 0 1726 92 78 163 chr6 598389 598690 -188680864 + MSTB LTR MaLR 176 426 0 27 29 0 0 chr6 599537 599571 -188679983 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr6 599972 599993 -188679561 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr6 601116 601160 -188678394 + AT_rich Low_complexity Low_complexity 1 44 0 521 264 39 19 chr6 601243 601398 -188678156 - L2 LINE L2 0 3313 3156 21 95 0 0 chr6 601960 602023 -188677531 + AT_rich Low_complexity Low_complexity 1 63 0 2209 130 0 0 chr6 603006 603306 -188676248 - AluSg SINE Alu -10 300 1 211 280 40 13 chr6 603686 603761 -188675793 + MIR3 SINE MIR 132 208 0 2148 113 3 10 chr6 603978 604279 -188675275 + AluSx SINE Alu 1 299 -13 180 0 0 0 chr6 605590 605610 -188673944 + (TGGGGG)n Simple_repeat Simple_repeat 1 20 0 255 125 0 0 chr6 605694 605734 -188673820 + (TA)n Simple_repeat Simple_repeat 1 40 0 23 33 0 0 chr6 607039 607069 -188672485 + AT_rich Low_complexity Low_complexity 1 30 0 2429 71 0 0 chr6 610215 610510 -188669044 - AluY SINE Alu -16 295 1 699 209 68 80 chr6 610769 611095 -188668459 + L1MC5 LINE L1 7612 7933 -28 2080 107 7 24 chr6 611320 611618 -188667936 - AluSg SINE Alu -17 293 1 262 293 71 10 chr6 612361 612460 -188667094 + L2 LINE L2 2955 3059 -213 302 229 60 131 chr6 612653 612797 -188666757 - MER5B DNA MER1_type -3 175 45 2432 50 0 30 chr6 612797 613098 -188666456 + AluY SINE Alu 7 298 -13 302 229 60 131 chr6 613098 613136 -188666418 - MER5B DNA MER1_type -133 45 6 21 0 0 0 chr6 613260 613281 -188666273 + AT_rich Low_complexity Low_complexity 1 21 0 406 316 153 54 chr6 613649 614732 -188664822 + L2 LINE L2 2028 3250 -22 180 261 22 0 chr6 615079 615125 -188664429 + L2 LINE L2 3201 3247 -25 2062 128 0 28 chr6 615710 616031 -188663523 + AluSx SINE Alu 1 312 0 229 311 37 30 chr6 618748 618883 -188660671 + MIR3 SINE MIR 67 202 -6 1715 181 11 0 chr6 619343 619630 -188659924 - AluJo SINE Alu -19 293 4 471 298 54 0 chr6 619900 620068 -188659486 - MIR SINE MIR -10 252 76 2283 84 0 24 chr6 620148 620446 -188659108 - AluSg SINE Alu -19 291 1 623 227 97 5 chr6 621149 621334 -188658220 + L1ME2 LINE L1 5963 6164 0 469 255 75 70 chr6 626428 626628 -188652926 - MER63A DNA MER1_type -9 201 1 278 342 57 25 chr6 626639 626797 -188652757 + L2 LINE L2 2089 2251 -1063 337 339 58 37 chr6 626920 627109 -188652445 - MIR SINE MIR -21 241 49 885 219 59 0 chr6 628151 628370 -188651184 - Tigger6a DNA MER2_type -2 1081 850 4973 40 2 0 chr6 628370 628991 -188650563 - L1P LINE L1 -2696 3450 2829 3541 47 0 0 chr6 628991 629394 -188650160 + L1PA5 LINE L1 5748 6152 -2 2839 240 97 9 chr6 629427 630219 -188649335 - Tigger6a DNA MER2_type -221 862 1 626 320 61 4 chr6 630221 630449 -188649105 + MIR SINE MIR 17 257 -5 749 148 6 42 chr6 630496 630668 -188648886 - MER3 DNA MER1_type 0 209 1 1284 144 42 14 chr6 633442 633657 -188645897 + MER46A DNA MER2_type 1 221 -15 598 225 191 0 chr6 635135 635308 -188644246 - MER58C DNA MER1_type -9 206 1 201 74 0 0 chr6 636406 636433 -188643121 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1221 15 0 0 chr6 636718 636889 -188642665 + L1PA4 LINE L1 6013 6183 0 1890 236 68 23 chr6 637053 637566 -188641988 + MER77 LTR ERV1 60 595 -10 21 57 0 0 chr6 637689 637724 -188641830 + AT_rich Low_complexity Low_complexity 1 35 0 336 111 0 0 chr6 638133 638187 -188641367 + (TG)n Simple_repeat Simple_repeat 2 55 0 405 207 18 36 chr6 638402 638513 -188641041 + L1MC5 LINE L1 7370 7478 -483 1329 112 0 0 chr6 638534 638712 -188640842 + AluSg/x SINE Alu 131 308 -4 379 287 43 28 chr6 638725 638958 -188640596 + L1MC5 LINE L1 7501 7824 -218 2690 23 0 0 chr6 639289 639590 -188639964 + AluY SINE Alu 2 302 -9 1235 105 17 6 chr6 639696 639900 -188639654 - AluSc SINE Alu 0 311 106 24 0 0 0 chr6 639943 639967 -188639587 + AT_rich Low_complexity Low_complexity 1 24 0 275 314 34 25 chr6 644995 645113 -188634441 + MER117 DNA MER1_type 36 154 -43 384 258 273 10 chr6 647239 647437 -188632117 + MIR SINE MIR 13 262 0 185 213 187 27 chr6 647487 647562 -188631992 - MIR SINE MIR -71 191 105 204 40 0 0 chr6 648482 648507 -188631047 + (T)n Simple_repeat Simple_repeat 1 25 0 2315 88 0 3 chr6 649565 649859 -188629695 - AluSx SINE Alu -19 293 1 21 0 0 0 chr6 649954 649975 -188629579 + AT_rich Low_complexity Low_complexity 1 21 0 195 42 0 0 chr6 650210 650234 -188629320 + (A)n Simple_repeat Simple_repeat 1 24 0 772 215 41 0 chr6 650614 650786 -188628768 + LTR37A LTR ERV1 248 426 0 570 287 123 0 chr6 651031 651226 -188628328 - MIR SINE MIR -10 252 34 2358 90 0 19 chr6 654224 654536 -188625018 + AluSg SINE Alu 1 306 -4 180 219 0 0 chr6 654766 654807 -188624747 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr6 654842 654864 -188624690 + AT_rich Low_complexity Low_complexity 1 22 0 300 307 181 0 chr6 655120 655325 -188624229 - MIR SINE MIR -4 258 17 1914 129 0 60 chr6 657033 657350 -188622204 - AluJb SINE Alu -13 299 2 31 68 0 0 chr6 657707 657766 -188621788 + AT_rich Low_complexity Low_complexity 1 59 0 2242 103 0 6 chr6 658747 659058 -188620496 + AluSc SINE Alu 1 309 0 340 354 31 10 chr6 661391 661607 -188617947 + MIR SINE MIR 3 249 -13 2313 90 7 0 chr6 661618 661918 -188617636 + AluSg SINE Alu 2 303 -7 356 260 103 113 chr6 662496 662722 -188616832 + HAL1 LINE L1 620 844 -1663 3800 136 71 5 chr6 662722 663325 -188616229 - LTR48B LTR ERV1 -1 643 1 356 260 103 113 chr6 663325 663398 -188616156 + HAL1 LINE L1 844 916 -1591 1862 153 24 66 chr6 663461 663841 -188615713 + MLT1B LTR MaLR 25 388 -2 262 284 116 53 chr6 664004 664229 -188615325 + HAL1 LINE L1 2124 2362 -145 555 245 77 77 chr6 664247 664533 -188615021 + MER21B LTR ERV1 5 290 -573 708 196 106 32 chr6 665296 665485 -188614069 + MER21B LTR ERV1 660 862 -1 619 253 32 58 chr6 665495 665807 -188613747 + L1ME LINE L1 812 1115 -5090 278 274 49 20 chr6 665876 665978 -188613576 + L1ME LINE L1 1644 1748 -4648 5909 222 167 31 chr6 665993 668613 -188610941 + L1M4 LINE L1 2392 5368 -778 1156 201 225 0 chr6 668607 668940 -188610614 + L1MC4 LINE L1 6595 7002 -1040 * 674 217 91 11 chr6 668948 669123 -188610431 - L1MC4 LINE L1 -462 7580 7392 765 227 74 29 chr6 669124 669366 -188610188 + L1MC4 LINE L1 7735 7987 -55 323 244 2 0 chr6 669378 669470 -188610084 + L1MC4 LINE L1 7681 8042 0 252 345 101 14 chr6 670361 670500 -188609054 - MIR3 SINE MIR -11 197 47 310 244 49 0 chr6 671075 671157 -188608397 + L2 LINE L2 3223 3308 -5 1799 138 57 27 chr6 671683 671979 -188607575 - AluJo SINE Alu -7 305 1 947 201 0 0 chr6 671986 672155 -188607399 - FAM SINE Alu -6 169 1 22 0 0 0 chr6 673061 673083 -188606471 + AT_rich Low_complexity Low_complexity 1 22 0 244 283 109 36 chr6 673180 673318 -188606236 + MIR3 SINE MIR 38 185 -23 2393 75 0 16 chr6 673994 674299 -188605255 - AluY SINE Alu -11 300 1 2035 140 3 0 chr6 674338 674668 -188604886 + AluSx SINE Alu 1 312 0 2381 91 0 0 chr6 674742 675038 -188604516 + AluSg SINE Alu 1 296 -14 14926 132 27 17 chr6 675764 677484 -188602070 + Tigger1 DNA MER2_type 7 1759 -659 2140 136 0 13 chr6 677484 677800 -188601754 + AluJo SINE Alu 1 312 0 14926 132 27 17 chr6 677800 678466 -188601088 + Tigger1 DNA MER2_type 1759 2417 -1 581 245 153 38 chr6 680341 680688 -188598866 - L1ME4a LINE L1 -202 5919 5533 449 290 60 33 chr6 681377 681560 -188597994 + L2 LINE L2 3126 3313 0 260 27 27 0 chr6 681599 681636 -188597918 + (TA)n Simple_repeat Simple_repeat 2 39 0 2375 98 0 0 chr6 681636 681931 -188597623 - AluSq SINE Alu -18 295 1 236 331 21 14 chr6 682107 682255 -188597299 - L1P LINE L1 -1914 4232 4077 321 182 171 0 chr6 682281 682369 -188597185 - MER106B DNA MER1_type 0 1059 957 12413 199 79 30 chr6 682372 685856 -188593698 + L1PB1 LINE L1 51 3363 -3504 881 118 0 0 chr6 685856 685975 -188593579 + AluSg/x SINE Alu 179 297 -15 12413 199 79 30 chr6 685975 687161 -188592393 + L1PB1 LINE L1 3363 4490 -2377 189 0 0 0 chr6 687161 687182 -188592372 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 12413 199 79 30 chr6 687182 688907 -188590647 + L1PB1 LINE L1 4490 6865 -2 759 298 58 0 chr6 688914 689122 -188590432 + MER58A DNA MER1_type 2 221 -3 1609 140 43 37 chr6 689502 689802 -188589752 - L1MC2 LINE L1 -18 6326 6025 2145 164 118 27 chr6 689802 690326 -188589228 - L1MCa LINE L1 -4142 2284 1713 2936 164 32 26 chr6 690335 690832 -188588722 + MLT2B3 LTR ERVL 16 518 -36 447 19 0 0 chr6 690832 690884 -188588670 + (TCCA)n Simple_repeat Simple_repeat 4 55 0 2936 164 32 26 chr6 690884 690922 -188588632 + MLT2B3 LTR ERVL 518 554 0 1149 205 115 0 chr6 690924 691202 -188588352 - L1MCa LINE L1 -4815 1611 1302 906 201 50 30 chr6 691638 691937 -188587617 + MER2 DNA MER2_type 6 345 0 24 0 0 0 chr6 693444 693468 -188586086 + AT_rich Low_complexity Low_complexity 1 24 0 1751 159 152 42 chr6 693526 693897 -188585657 - Charlie1 DNA MER1_type -1730 1031 702 909 165 0 0 chr6 693897 694030 -188585524 + FLAM_A SINE Alu 1 133 0 1847 134 78 0 chr6 694038 694341 -188585213 + AluSx SINE Alu 1 312 0 1751 159 152 42 chr6 694341 694369 -188585185 - Charlie1 DNA MER1_type -2065 696 578 3146 190 77 31 chr6 694466 694867 -188584687 - L1MCa LINE L1 -4510 1916 1535 194 0 39 0 chr6 694867 694893 -188584661 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3146 190 77 31 chr6 694893 695491 -188584063 - L1MCa LINE L1 -4891 1535 776 891 211 11 6 chr6 695489 695669 -188583885 - L1MCa LINE L1 -6167 259 79 * 641 196 21 21 chr6 695665 695808 -188583746 - L1MCa LINE L1 -6272 154 12 * 2064 112 36 7 chr6 695941 696245 -188583309 + AluSq SINE Alu 1 313 0 1089 135 17 97 chr6 696725 696962 -188582592 - Tigger1 DNA MER2_type -2200 218 1 288 0 0 0 chr6 697676 697708 -188581846 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 1410 171 209 31 chr6 697720 698164 -188581390 + MER74A LTR ERVL 34 556 -2 22 35 0 0 chr6 700362 700391 -188579163 + AT_rich Low_complexity Low_complexity 1 29 0 1723 98 0 0 chr6 700515 700730 -188578824 - AluSg SINE Alu -95 215 1 282 281 305 0 chr6 700734 700898 -188578656 - MIR SINE MIR -36 226 13 279 0 0 0 chr6 700898 700929 -188578625 + (CA)n Simple_repeat Simple_repeat 1 31 0 276 255 128 10 chr6 701222 701324 -188578230 + MIR SINE MIR 77 190 -72 26 50 0 0 chr6 701946 701986 -188577568 + AT_rich Low_complexity Low_complexity 1 40 0 358 330 89 65 chr6 702200 702727 -188576827 + L1ME LINE L1 5267 5806 -315 302 253 53 0 chr6 702893 702968 -188576586 - MIR SINE MIR -150 112 34 419 246 123 35 chr6 702994 703197 -188576357 - L1MC5 LINE L1 -30 7931 7711 22 56 0 0 chr6 704478 704514 -188575040 + AT_rich Low_complexity Low_complexity 1 36 0 2428 76 0 3 chr6 705159 705463 -188574091 - AluY SINE Alu -8 303 1 488 174 31 39 chr6 705627 705818 -188573736 + L1MB7 LINE L1 5889 6114 -66 211 338 0 0 chr6 707122 707193 -188572361 + G-rich Low_complexity Low_complexity 6 76 0 225 0 0 0 chr6 708091 708116 -188571438 + (CA)n Simple_repeat Simple_repeat 2 26 0 414 51 0 0 chr6 708833 708892 -188570662 - AluSc SINE Alu -6 303 245 2193 80 35 7 chr6 708939 709225 -188570329 - AluSg SINE Alu -16 294 1 1996 114 10 33 chr6 710132 710438 -188569116 - AluJo SINE Alu -4 308 10 249 269 103 13 chr6 710599 710677 -188568877 - L2 LINE L2 0 3313 3229 * 368 368 162 25 chr6 710675 711522 -188568032 - L2 LINE L2 -1393 1921 959 183 217 0 43 chr6 712034 712080 -188567474 - MIR SINE MIR -15 247 204 1391 226 7 3 chr6 713038 713321 -188566233 + AluJo SINE Alu 1 284 -28 1904 128 24 0 chr6 713392 713681 -188565873 + AluYa5 SINE Alu 1 296 -15 308 161 54 0 chr6 713936 713992 -188565562 - L2 LINE L2 0 3272 3214 415 174 14 0 chr6 714231 714300 -188565254 - MER8 DNA MER2_type 0 239 170 * 2206 144 108 2 chr6 714297 714694 -188564860 + Tigger2 DNA MER2_type 2280 2718 0 2867 161 205 20 chr6 717022 717631 -188561923 + pTR5 LTR ERV1 1717 2438 0 523 138 92 28 chr6 717642 717751 -188561803 + MER53 DNA DNA 72 187 -2 1067 288 151 12 chr6 717754 718438 -188561116 - L2 LINE L2 -1521 1793 1015 467 219 89 0 chr6 718514 718637 -188560917 - MER94 DNA DNA 0 134 1 2258 98 7 7 chr6 718668 718974 -188560580 + AluSc SINE Alu 1 306 -3 252 346 48 18 chr6 719729 719957 -188559597 + ERVL LTR ERVL 4410 4644 -1120 376 321 54 29 chr6 720200 720480 -188559074 + ERVL LTR ERVL 5094 5380 -384 464 244 289 29 chr6 720662 720977 -188558577 + LTR16C LTR ERVL 85 481 -10 1395 165 4 16 chr6 721041 721283 -188558271 - AluJo SINE Alu -20 292 54 308 205 212 40 chr6 722313 722464 -188557090 + L2 LINE L2 3126 3302 -11 284 339 46 9 chr6 724525 724634 -188554920 + MIR3 SINE MIR 87 199 -9 2421 97 0 0 chr6 724658 724969 -188554585 - AluY SINE Alu 0 311 1 22 0 0 0 chr6 727545 727567 -188551987 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr6 727937 727976 -188551578 + AT_rich Low_complexity Low_complexity 1 39 0 426 318 17 6 chr6 728796 728969 -188550585 + (CA)n Simple_repeat Simple_repeat 1 175 0 192 253 0 0 chr6 728971 729046 -188550508 + (CATA)n Simple_repeat Simple_repeat 4 78 0 219 259 0 0 chr6 729080 729165 -188550389 + (CA)n Simple_repeat Simple_repeat 1 85 0 22 35 0 0 chr6 732218 732247 -188547307 + AT_rich Low_complexity Low_complexity 1 29 0 5178 20 3 3 chr6 734162 734753 -188544801 - L1PA3 LINE L1 0 6155 5565 339 231 13 0 chr6 735201 735279 -188544275 - MIR3 SINE MIR -17 191 113 260 250 0 0 chr6 735668 735732 -188543822 + MLT1I LTR MaLR 346 409 0 343 246 69 23 chr6 736611 736741 -188542813 + L2 LINE L2 3137 3272 0 508 314 42 29 chr6 738777 739162 -188540392 - L2 LINE L2 0 3313 2924 318 328 154 17 chr6 739221 739636 -188539918 - L2 LINE L2 -369 2945 2474 550 254 109 16 chr6 739719 739912 -188539642 + MIR SINE MIR 52 262 0 526 299 57 10 chr6 739925 740119 -188539435 - L2 LINE L2 -874 2440 2238 251 290 107 0 chr6 740155 740286 -188539268 - L2 LINE L2 -1194 2120 1976 2429 88 0 3 chr6 740838 741144 -188538410 - AluSq SINE Alu -8 305 1 1241 185 161 24 chr6 741173 741514 -188538040 + MLT1B LTR MaLR 3 390 0 241 291 134 34 chr6 741999 742267 -188537287 - L2 LINE L2 -84 3229 2935 211 328 74 0 chr6 742337 742459 -188537095 - L2 LINE L2 -504 2810 2680 1322 166 200 10 chr6 742694 742805 -188536749 - MER7A DNA MER2_type -2692 346 257 1489 102 56 0 chr6 742805 743020 -188536534 - MER30 DNA MER1_type -2 228 2 1322 166 200 10 chr6 743020 743198 -188536356 - MER7A DNA MER2_type -2781 257 4 280 274 168 58 chr6 743217 743527 -188536027 - L2 LINE L2 -1318 1996 1653 664 213 27 19 chr6 745039 745218 -188534336 - MER5A DNA MER1_type 0 189 3 2616 68 0 0 chr6 745820 746129 -188533425 - AluY SINE Alu -2 309 1 366 284 31 89 chr6 746430 746722 -188532832 + LTR16C LTR ERVL 108 382 -109 3104 168 2 0 chr6 747046 747594 -188531960 - L1P LINE L1 -1610 4536 3988 5713 139 8 6 chr6 747597 748710 -188530844 + L1PA14 LINE L1 5047 6161 0 989 145 6 52 chr6 748710 748882 -188530672 + AluJb SINE Alu 132 295 -17 1501 172 41 28 chr6 748958 749249 -188530305 - AluJo SINE Alu -15 297 3 219 250 0 0 chr6 749319 749387 -188530167 + CT-rich Low_complexity Low_complexity 5 72 0 234 0 0 0 chr6 751797 751823 -188527731 + (GA)n Simple_repeat Simple_repeat 1 26 0 470 336 38 19 chr6 754444 754655 -188524899 - MIR SINE MIR -26 236 22 555 260 19 7 chr6 754748 754902 -188524652 + L2 LINE L2 3153 3308 -5 520 304 42 51 chr6 756445 756896 -188522658 - L2 LINE L2 0 3313 2867 345 273 50 22 chr6 757156 757295 -188522259 - MARNA DNA Mariner -33 553 411 2075 96 15 4 chr6 757295 757567 -188521987 - AluSq SINE Alu -12 301 27 925 138 0 0 chr6 757889 758019 -188521535 + AluSp SINE Alu 1 130 -183 2440 48 3 0 chr6 758119 758411 -188521143 - AluY SINE Alu -18 293 1 35 41 0 0 chr6 760058 760107 -188519447 + AT_rich Low_complexity Low_complexity 1 49 0 950 295 102 31 chr6 760354 760745 -188518809 - L1ME3 LINE L1 -277 5885 5437 2203 132 3 0 chr6 760745 761233 -188518321 - AluSq SINE Alu 0 313 1 950 295 102 31 chr6 761233 761427 -188518127 - L1ME3 LINE L1 -725 5437 5258 881 136 65 0 chr6 761448 761602 -188517952 - Tigger1 DNA MER2_type 0 2418 2255 260 174 31 10 chr6 761607 761705 -188517849 + (TA)n Simple_repeat Simple_repeat 1 100 0 12537 125 15 40 chr6 761711 761912 -188517642 - Tigger1 DNA MER2_type -196 2222 2017 1913 103 3 94 chr6 761912 762231 -188517323 - AluSq SINE Alu -23 290 1 12537 125 15 40 chr6 762231 764330 -188515224 - Tigger1 DNA MER2_type -401 2017 1 652 306 52 29 chr6 764443 764887 -188514667 - L1ME3 LINE L1 -1103 5043 4590 417 246 84 14 chr6 765084 765226 -188514328 - MIR SINE MIR 0 262 111 308 336 55 48 chr6 765226 765372 -188514182 + L1ME2 LINE L1 5731 5877 -287 1209 215 27 5 chr6 765459 765678 -188513876 + MER58A DNA MER1_type 1 224 0 934 153 23 6 chr6 765949 766125 -188513429 + L1MA4 LINE L1 6118 6296 -4 2235 228 82 14 chr6 766460 767047 -188512507 + L1ME3 LINE L1 5536 6162 0 1234 116 32 26 chr6 767184 767373 -188512181 + L1PA15 LINE L1 5969 6158 -7 194 150 25 0 chr6 768004 768044 -188511510 + (TA)n Simple_repeat Simple_repeat 1 41 0 201 121 0 0 chr6 768044 768077 -188511477 + (TC)n Simple_repeat Simple_repeat 2 34 0 229 318 120 54 chr6 768331 768573 -188510981 + L2 LINE L2 2659 2916 -398 22 0 0 0 chr6 769666 769688 -188509866 + AT_rich Low_complexity Low_complexity 1 22 0 761 225 34 49 chr6 771787 772054 -188507500 - LTR13 LTR ERVK -744 263 1 229 191 95 16 chr6 772112 772175 -188507379 + LTR13 LTR ERVK 242 309 -698 822 295 93 42 chr6 772186 772391 -188507163 - L1M4 LINE L1 -1503 4643 4450 2400 72 7 0 chr6 772391 772683 -188506871 - AluSp SINE Alu -19 294 1 822 295 93 42 chr6 772683 773220 -188506334 - L1M4 LINE L1 -1696 4450 3863 261 114 63 13 chr6 774101 774180 -188505374 + GA-rich Low_complexity Low_complexity 2 84 0 207 0 0 0 chr6 774501 774524 -188505030 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2107 128 0 0 chr6 774526 774808 -188504746 - AluSq SINE Alu -31 282 1 228 176 0 0 chr6 775454 775505 -188504049 + LTR33 LTR ERVL 1 51 -470 310 42 42 0 chr6 775728 775776 -188503778 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 299 232 14 0 chr6 775857 775926 -188503628 + LTR33 LTR ERVL 426 495 -26 711 285 38 29 chr6 777188 777528 -188502026 - L1M4 LINE L1 -2703 3443 3101 650 267 32 45 chr6 777575 777822 -188501732 + LTR33 LTR ERVL 278 521 0 196 229 0 100 chr6 778263 778333 -188501221 - L2 LINE L2 -93 3220 3158 1602 223 31 77 chr6 778421 778942 -188500612 + MLT1D LTR MaLR 9 505 0 238 299 43 104 chr6 778943 779174 -188500380 - L2 LINE L2 -403 2911 2695 307 287 85 53 chr6 780672 780860 -188498694 + L1ME4a LINE L1 5926 6119 -2 2379 55 3 39 chr6 780896 781206 -188498348 + AluY SINE Alu 1 299 -12 1640 177 88 9 chr6 781547 781864 -188497690 + MLT2C1 LTR ERVL 8 349 -48 1907 154 50 71 chr6 781919 782301 -188497253 - THE1C LTR MaLR -1 374 1 293 130 19 37 chr6 782380 782434 -188497120 + MLT2C1 LTR ERVL 468 520 0 762 193 66 0 chr6 782435 782601 -188496953 + MLT1D-int LTR MaLR 2 178 -1193 1735 57 0 13 chr6 782620 782850 -188496704 + AluY SINE Alu 1 227 -84 263 320 69 15 chr6 782851 783054 -188496500 + MLT1C LTR MaLR 247 460 -7 237 216 157 0 chr6 784487 784538 -188495016 - L2 LINE L2 -16 3297 3239 699 256 125 38 chr6 784602 784616 -188494938 - LTR16C LTR ERVL 0 491 480 1647 201 175 24 chr6 784616 785068 -188494486 + MLT2B1 LTR ERVL 1 520 0 699 256 125 38 chr6 785068 785373 -188494181 - LTR16C LTR ERVL -11 480 144 2199 100 0 34 chr6 785846 786166 -188493388 - AluSx SINE Alu -3 309 1 863 261 114 19 chr6 786166 786491 -188493063 + MLT1J LTR MaLR 25 380 -131 314 281 0 12 chr6 789765 789865 -188489689 + CT-rich Low_complexity Low_complexity 1 98 0 1723 229 31 52 chr6 841387 841947 -188437607 - L2 LINE L2 -3 3310 2777 2073 94 3 3 chr6 841947 842234 -188437320 - AluSg SINE Alu -23 287 1 1723 229 31 52 chr6 842234 842302 -188437252 - L2 LINE L2 -536 2777 2709 618 224 175 6 chr6 843213 843396 -188436158 + MIR SINE MIR 37 250 -12 1264 242 58 22 chr6 845944 846304 -188433250 - MLT1A2 LTR MaLR -1 373 1 1923 119 172 107 chr6 846485 846932 -188432622 - LTR26E LTR ERV1 -146 476 1 230 368 47 74 chr6 847285 847543 -188432011 - L2 LINE L2 0 3272 3022 284 150 27 16 chr6 847743 847816 -188431738 - L1MC2 LINE L1 0 6333 6256 4783 158 34 19 chr6 847819 848703 -188430851 + L1MC1 LINE L1 5319 6215 -118 4030 128 16 19 chr6 849432 850065 -188429489 + MER41B LTR ERV1 1 631 -4 1164 179 24 8 chr6 850728 850979 -188428575 + L1MB7 LINE L1 5911 6165 -19 507 174 24 0 chr6 851028 851155 -188428399 + L1M4 LINE L1 5202 5331 -832 365 286 45 9 chr6 851162 851274 -188428280 - L1MC4 LINE L1 -1341 6701 6586 358 291 0 0 chr6 851268 851347 -188428207 + L1MC4 LINE L1 6614 6692 -1350 * 674 45 0 0 chr6 851348 851436 -188428118 + L1MC/D LINE L1 5360 5447 -897 1654 161 42 98 chr6 851495 851905 -188427649 - MLT1B LTR MaLR -3 387 1 668 119 198 0 chr6 851905 852031 -188427523 + L1MC/D LINE L1 5617 5767 -577 1619 223 95 63 chr6 853609 854134 -188425420 - MLT1F LTR MaLR 0 542 1 302 0 26 0 chr6 856680 856718 -188422836 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3095 147 106 19 chr6 856947 857539 -188422015 + MER73 LTR ERVL 1 644 0 13984 75 3 8 chr6 857764 857954 -188421600 + L1PA7 LINE L1 3491 3680 -2474 231 36 0 0 chr6 857954 857982 -188421572 + (CA)n Simple_repeat Simple_repeat 1 28 0 13984 75 3 8 chr6 857982 858952 -188420602 + L1PA7 LINE L1 3680 4653 -1501 2781 6 0 9 chr6 858952 859268 -188420286 + AluYb8 SINE Alu 1 313 -5 13984 75 3 8 chr6 859268 860782 -188418772 + L1PA7 LINE L1 4653 6149 -5 1687 186 73 35 chr6 860897 861268 -188418286 + MLT1B LTR MaLR 6 390 0 444 224 154 21 chr6 861291 861434 -188418120 + MLT1H LTR MaLR 11 172 -377 298 286 214 0 chr6 861535 861661 -188417893 + MLT1H LTR MaLR 392 544 -5 192 389 18 9 chr6 864059 864172 -188415382 - MIR SINE MIR -74 134 21 2465 53 0 0 chr6 864459 864761 -188414793 - AluY SINE Alu -9 302 1 26 30 0 0 chr6 864988 865021 -188414533 + AT_rich Low_complexity Low_complexity 1 33 0 540 126 0 0 chr6 865355 865442 -188414112 + (TCCA)n Simple_repeat Simple_repeat 2 88 0 920 143 6 0 chr6 865453 865621 -188413933 + (TCCA)n Simple_repeat Simple_repeat 2 170 0 579 213 0 0 chr6 865632 865773 -188413781 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 819 183 0 0 chr6 865784 865959 -188413595 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 413 264 0 85 chr6 865962 866091 -188413463 - L2 LINE L2 -5 3308 3191 208 260 0 0 chr6 866779 866829 -188412725 + L2 LINE L2 3258 3307 -6 2924 156 112 55 chr6 867600 867674 -188411880 - LTR8A LTR ERV1 0 727 659 1971 75 39 29 chr6 867674 867975 -188411579 + AluY SINE Alu 1 304 0 2924 156 112 55 chr6 867975 868587 -188410967 - LTR8A LTR ERV1 -68 659 1 249 33 0 0 chr6 869219 869249 -188410305 + (TG)n Simple_repeat Simple_repeat 2 31 0 24 32 0 0 chr6 872373 872404 -188407150 + AT_rich Low_complexity Low_complexity 1 31 0 552 194 0 0 chr6 872420 872518 -188407036 + FLAM_C SINE Alu 26 123 -20 2107 94 3 23 chr6 873181 873488 -188406066 + AluSg SINE Alu 1 301 -9 21 36 0 0 chr6 875098 875126 -188404428 + AT_rich Low_complexity Low_complexity 1 28 0 2182 88 3 10 chr6 875239 875535 -188404019 - AluSp SINE Alu -19 294 1 2500 34 0 0 chr6 875846 876140 -188403414 + AluY SINE Alu 1 294 -17 263 342 221 9 chr6 876232 876454 -188403100 - L3 LINE CR1 -5 1572 1304 241 263 288 0 chr6 877915 877995 -188401559 - L2 LINE L2 0 3313 3211 2082 201 21 31 chr6 878411 878893 -188400661 - L1MB7 LINE L1 -7 6177 5701 1918 159 31 3 chr6 878900 879227 -188400327 + Tigger4(Zombi) DNA MER2_type 1 336 -2395 1938 100 0 25 chr6 879229 879510 -188400044 + Tigger4(Zombi) DNA MER2_type 2457 2730 -1 2347 157 54 25 chr6 879511 879987 -188399567 - L1MB7 LINE L1 -489 5689 5196 2117 114 7 0 chr6 879987 880286 -188399268 - AluSx SINE Alu -9 303 3 2347 157 54 25 chr6 880286 880371 -188399183 - L1MB7 LINE L1 -982 5196 5115 2179 138 62 8 chr6 881224 881593 -188397961 + MLT1B LTR MaLR 1 389 -1 276 288 129 30 chr6 881755 881939 -188397615 - MIR SINE MIR -50 212 14 22 35 0 0 chr6 882175 882204 -188397350 + AT_rich Low_complexity Low_complexity 1 29 0 267 214 36 12 chr6 883446 883530 -188396024 + (TCTA)n Simple_repeat Simple_repeat 1 86 0 231 309 12 24 chr6 886959 887043 -188392511 + MIR3 SINE MIR 115 197 -11 313 262 87 10 chr6 887047 887150 -188392404 + L1MC4 LINE L1 7928 8038 -4 3063 196 97 68 chr6 887254 888093 -188391461 + MER21B LTR ERV1 1 863 0 190 229 0 0 chr6 888433 888468 -188391086 - L2 LINE L2 -1433 1881 1847 197 244 37 6 chr6 888486 888554 -188391000 - MIR SINE MIR -56 152 81 249 33 0 0 chr6 889327 889357 -188390197 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 21 57 0 0 chr6 889955 889990 -188389564 + AT_rich Low_complexity Low_complexity 1 35 0 279 339 42 36 chr6 891382 891550 -188388004 - MIR SINE MIR -73 189 21 180 0 0 0 chr6 893692 893712 -188385842 + (CATA)n Simple_repeat Simple_repeat 4 23 0 874 189 83 152 chr6 893773 893977 -188385577 - MLT1A2 LTR MaLR -8 382 218 369 0 0 0 chr6 893977 894018 -188385536 + (TG)n Simple_repeat Simple_repeat 1 41 0 874 189 83 152 chr6 894018 894221 -188385333 - MLT1A2 LTR MaLR -172 218 3 1869 132 0 4 chr6 894326 894670 -188384884 - AluY SINE Alu 0 343 1 1779 172 67 6 chr6 895030 895390 -188384164 - L1MB3 LINE L1 -9 6174 5793 644 178 159 25 chr6 895418 895581 -188383973 + MER58A DNA MER1_type 40 224 0 23 54 0 0 chr6 896553 896590 -188382964 + AT_rich Low_complexity Low_complexity 1 37 0 1103 191 9 43 chr6 897267 897498 -188382056 + MER58A DNA MER1_type 2 224 0 1971 121 0 0 chr6 897768 898078 -188381476 - AluSx SINE Alu 0 310 1 272 313 0 12 chr6 898319 898399 -188381155 + MIR SINE MIR 23 101 -107 269 237 97 72 chr6 898737 898920 -188380634 - MLT1J2 LTR MaLR -215 231 44 552 258 129 15 chr6 899452 899716 -188379838 + LTR50 LTR ERVL 502 795 0 225 291 80 117 chr6 900425 900638 -188378916 + L2 LINE L2 3063 3267 -5 264 214 0 43 chr6 902419 902489 -188377065 + (CACCAT)n Simple_repeat Simple_repeat 5 71 0 2137 114 0 13 chr6 902674 902982 -188376572 - AluSg SINE Alu -2 308 5 1505 123 35 15 chr6 903053 903313 -188376241 + L1MA5A LINE L1 6030 6294 -3 324 211 0 0 chr6 905075 905132 -188374422 - FLAM_A SINE Alu -75 57 1 208 318 34 23 chr6 905861 905949 -188373605 + MIR SINE MIR 36 124 -84 195 297 122 0 chr6 905980 906054 -188373500 - L2 LINE L2 -32 3281 3199 623 89 0 10 chr6 906057 906158 -188373396 + (GA)n Simple_repeat Simple_repeat 1 100 0 547 250 128 0 chr6 906315 906503 -188373051 - MER5C DNA MER1_type 0 324 113 268 229 0 48 chr6 906515 906598 -188372956 + CT-rich Low_complexity Low_complexity 4 82 0 3107 254 155 44 chr6 906707 907500 -188372054 + L1MC4 LINE L1 6469 7172 -870 2207 117 43 81 chr6 907500 907887 -188371667 + MSTB LTR MaLR 1 401 -25 314 0 49 0 chr6 907887 907928 -188371626 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1755 122 4 11 chr6 907933 908211 -188371343 - AluSq SINE Alu -37 276 1 2144 121 0 3 chr6 908218 908532 -188371022 - AluSq SINE Alu 0 313 1 2207 117 43 81 chr6 908532 908573 -188370981 + MSTB LTR MaLR 411 426 0 3107 254 155 44 chr6 908573 909195 -188370359 + L1MC4 LINE L1 7172 8042 0 270 104 0 62 chr6 909197 909245 -188370309 - MER5C DNA MER1_type -201 123 79 1372 166 22 25 chr6 910453 910731 -188368823 - AluJo SINE Alu -25 287 11 677 199 46 7 chr6 911009 911160 -188368394 - MER45A DNA AcHobo 0 178 22 2005 87 11 7 chr6 911204 911480 -188368074 + AluSx SINE Alu 24 300 -12 940 286 74 25 chr6 912101 912534 -188367020 + L1ME3A LINE L1 5513 5966 -204 332 45 76 0 chr6 912662 912728 -188366826 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 309 343 63 58 chr6 912728 913110 -188366444 - L1MEd LINE L1 -4935 1184 801 612 95 71 0 chr6 913110 913278 -188366276 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 528 273 122 65 chr6 913532 913917 -188365637 - MLT1J LTR MaLR 0 511 105 331 244 96 77 chr6 914264 914751 -188364803 - L1MC5 LINE L1 -183 8058 1922 * 414 145 63 5 chr6 914334 914752 -188364802 + (TA)n Simple_repeat Simple_repeat 1 442 0 315 244 26 52 chr6 914746 914861 -188364693 - L1MC5 LINE L1 -4335 2091 1980 * 310 116 70 23 chr6 914776 914948 -188364606 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 306 206 89 89 chr6 914861 915041 -188364513 + L1MC5 LINE L1 7576 7755 -206 * 240 111 89 0 chr6 914921 915056 -188364498 + (TATAA)n Simple_repeat Simple_repeat 5 151 0 * 205 200 40 13 chr6 915043 915118 -188364436 + (TTATA)n Simple_repeat Simple_repeat 3 79 0 * 1248 244 58 22 chr6 917120 917480 -188362074 + MLT1A2 LTR MaLR 1 373 -1 520 229 175 6 chr6 919478 919661 -188359893 - MIR SINE MIR -12 250 37 231 36 0 0 chr6 920643 920671 -188358883 + (GA)n Simple_repeat Simple_repeat 2 29 0 234 231 0 0 chr6 921378 921430 -188358124 + C-rich Low_complexity Low_complexity 1 52 0 198 309 99 66 chr6 921852 922004 -188357550 - L2 LINE L2 -5 3267 3111 292 327 59 41 chr6 922129 922349 -188357205 - MIR SINE MIR -35 227 4 1991 92 0 11 chr6 922662 922923 -188356631 - AluSg SINE Alu -14 296 39 2090 114 0 46 chr6 923940 924247 -188355307 - AluSg SINE Alu -17 293 1 3356 108 124 2 chr6 924291 924809 -188354745 + LTR12 LTR ERV1 1 581 -133 232 353 0 20 chr6 925097 925199 -188354355 + MIR SINE MIR 84 183 -79 2193 138 80 31 chr6 925319 925732 -188353822 + Tigger2a DNA MER2_type 2 434 0 192 297 47 0 chr6 925805 925869 -188353685 - L2 LINE L2 -1 3312 3246 222 317 55 35 chr6 925994 926139 -188353415 - L2 LINE L2 -191 3081 2934 2216 191 33 9 chr6 926301 926751 -188352803 - LOR1b LTR ERV1 0 461 1 4393 108 68 85 chr6 928678 929477 -188350077 + LTR1 LTR ERV1 1 785 0 16050 154 61 27 chr6 929477 932397 -188347157 + HUERS-P2 LTR ERV1 1 3088 0 4084 121 74 74 chr6 932440 933225 -188346329 + LTR1 LTR ERV1 1 785 0 2155 228 34 15 chr6 934399 934935 -188344619 + L1MC3 LINE L1 7240 7785 0 567 310 31 31 chr6 934985 935211 -188344343 - MIR SINE MIR -1 261 36 301 290 140 11 chr6 935365 935551 -188344003 + L1ME3 LINE L1 416 625 -6096 528 297 76 42 chr6 936114 936564 -188342990 + L1ME3 LINE L1 1314 1747 -4793 2695 110 0 3 chr6 936564 936929 -188342625 - THE1B LTR MaLR 0 364 1 528 297 76 42 chr6 936929 937015 -188342539 + L1ME3 LINE L1 1747 1872 -4668 5106 45 0 0 chr6 937015 937619 -188341935 + L1PA5 LINE L1 5550 6153 -1 528 297 76 42 chr6 937619 937634 -188341920 + L1ME3 LINE L1 1872 1885 -4655 * 1834 265 101 39 chr6 937630 938134 -188341420 + L1ME3 LINE L1 4147 4619 -1937 2461 54 0 7 chr6 938134 938431 -188341123 + AluY SINE Alu 1 295 -16 1834 265 101 39 chr6 938431 938975 -188340579 + L1ME3 LINE L1 4619 6526 -30 375 289 86 13 chr6 939046 939347 -188340207 + L1ME LINE L1 3316 3638 -2902 22 0 0 0 chr6 939860 939882 -188339672 + AT_rich Low_complexity Low_complexity 1 22 0 6132 43 1 0 chr6 940072 940796 -188338758 - L1PA7 LINE L1 -11 6143 5419 1353 182 26 45 chr6 940796 941065 -188338489 - AluJb SINE Alu -35 277 14 327 274 65 38 chr6 941118 941304 -188338250 + L1ME LINE L1 5596 5786 -754 290 257 105 66 chr6 941500 941652 -188337902 + L1ME LINE L1 5940 6097 -467 234 0 0 0 chr6 941994 942020 -188337534 + (A)n Simple_repeat Simple_repeat 1 26 0 197 327 106 10 chr6 942542 942646 -188336908 - L2 LINE L2 -8 3264 3151 333 323 158 30 chr6 942877 943041 -188336513 - MER91A DNA MER1_type -11 185 1 1604 216 8 14 chr6 944480 944836 -188334718 - L1MC1 LINE L1 -1 6332 5979 239 170 19 19 chr6 944876 944929 -188334625 - L1MC1 LINE L1 -360 5984 5932 476 163 8 24 chr6 945599 945722 -188333832 + CT-rich Low_complexity Low_complexity 3 123 0 647 193 6 28 chr6 945800 945981 -188333573 + CT-rich Low_complexity Low_complexity 2 178 0 324 284 28 74 chr6 946471 946647 -188332907 - MIR3 SINE MIR -25 183 16 1510 180 82 0 chr6 946684 947051 -188332503 + MER74A LTR ERVL 132 528 -30 317 277 67 8 chr6 947634 947753 -188331801 + MIR SINE MIR 21 146 -116 347 246 99 28 chr6 949668 949810 -188329744 + MIR SINE MIR 34 185 -77 207 213 0 49 chr6 950171 950232 -188329322 + MIR SINE MIR 89 146 -62 716 189 23 34 chr6 950284 950339 -188329215 - MIR SINE MIR -37 225 171 2393 150 61 0 chr6 950339 950746 -188328808 - MSTB1 LTR MaLR 0 432 1 716 189 23 34 chr6 950746 950865 -188328689 - MIR SINE MIR -91 171 53 247 234 35 127 chr6 952117 952314 -188327240 - MER112 DNA MER1_type -48 212 34 2105 113 0 7 chr6 952314 952597 -188326957 + AluY SINE Alu 1 281 -30 186 233 0 0 chr6 954059 954119 -188325435 + (TA)n Simple_repeat Simple_repeat 1 60 0 58 54 0 0 chr6 954127 954220 -188325334 + AT_rich Low_complexity Low_complexity 1 93 0 486 219 47 72 chr6 954227 954505 -188325049 - L1MC5 LINE L1 -184 7777 7507 893 258 30 8 chr6 954523 954790 -188324764 - MER33 DNA MER1_type -30 294 22 488 314 71 25 chr6 955285 955610 -188323944 - L2 LINE L2 0 3313 2974 3051 296 116 16 chr6 955728 957474 -188322080 - L2 LINE L2 -1076 2238 319 1117 152 148 9 chr6 957524 957754 -188321800 - L1MB8 LINE L1 -60 6118 5857 21 36 0 0 chr6 958057 958085 -188321469 + AT_rich Low_complexity Low_complexity 1 28 0 254 324 47 7 chr6 958433 958581 -188320973 + L1ME LINE L1 5757 5910 -211 192 83 0 56 chr6 959708 959744 -188319810 - L2 LINE L2 0 3272 3239 349 266 87 35 chr6 960888 961117 -188318437 - L1ME4a LINE L1 -252 5869 5629 1465 257 74 4 chr6 963589 964060 -188315494 + MLT1D LTR MaLR 2 505 0 2276 101 0 0 chr6 964708 964996 -188314558 + AluSc SINE Alu 1 288 -21 212 357 0 0 chr6 965233 965303 -188314251 + MIR SINE MIR 45 114 -148 388 323 52 13 chr6 965494 965649 -188313905 - MIR SINE MIR -100 162 2 383 333 78 16 chr6 966511 966703 -188312851 - MIR SINE MIR -16 246 43 857 189 111 75 chr6 967800 968106 -188311448 + MER33 DNA MER1_type 7 323 -1 180 77 0 0 chr6 972121 972147 -188307407 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 279 245 128 21 chr6 973044 973232 -188306322 + L1ME4a LINE L1 5742 5949 -172 189 274 16 0 chr6 974612 974674 -188304880 + MIR3 SINE MIR 103 165 -43 1771 151 15 8 chr6 974832 975097 -188304457 - AluJb SINE Alu -18 294 28 388 306 141 15 chr6 975761 975960 -188303594 + HAL1 LINE L1 286 509 -1998 1785 159 32 155 chr6 976397 976951 -188302603 + MER66B LTR ERV1 1 486 0 248 289 39 0 chr6 976990 977094 -188302460 + HAL1 LINE L1 991 1098 -1409 1017 193 133 9 chr6 977095 977328 -188302226 + L1M4c LINE L1 3 264 -6120 2304 80 3 13 chr6 977695 977994 -188301560 - AluY SINE Alu -15 296 1 1108 263 117 52 chr6 978465 979055 -188300499 - HAL1 LINE L1 -644 1863 1236 2278 152 49 0 chr6 979774 980143 -188299411 - MLT1B LTR MaLR -3 387 1 549 211 75 25 chr6 980657 980818 -188298736 - MER5B DNA MER1_type -5 173 5 204 267 17 17 chr6 980913 980973 -188298581 + L2 LINE L2 3138 3197 -75 1645 161 46 14 chr6 981155 981435 -188298119 + AluJo SINE Alu 1 289 -23 29 28 0 0 chr6 981753 981789 -188297765 + AT_rich Low_complexity Low_complexity 1 36 0 2706 97 11 0 chr6 981956 982317 -188297237 - L1PB1 LINE L1 -5 6146 5782 239 77 0 26 chr6 982317 982356 -188297198 + (TA)n Simple_repeat Simple_repeat 1 38 0 298 228 65 11 chr6 982364 982456 -188297098 - L1MC4 LINE L1 -1343 6699 6603 228 268 0 31 chr6 982461 982558 -188296996 - L1MC4 LINE L1 -1340 6702 6609 5799 161 8 26 chr6 982597 984303 -188295251 - L1P5 LINE L1 -360 5791 4121 9331 152 48 8 chr6 984331 985219 -188294335 - L1PBa LINE L1 -2508 4354 3503 2485 91 0 0 chr6 985219 985527 -188294027 - AluY SINE Alu -1 310 3 9331 152 48 8 chr6 985527 987439 -188292115 - L1PBa LINE L1 -3359 3503 1441 2607 141 19 2 chr6 987436 987854 -188291700 - L1PBa LINE L1 -6436 427 3 * 2235 92 30 0 chr6 990478 990773 -188288781 - AluSq SINE Alu -9 304 1 525 287 106 11 chr6 990829 991017 -188288537 - MIR SINE MIR -27 235 30 276 308 115 20 chr6 991074 991266 -188288288 + L3b LINE CR1 1123 1346 -237 1661 129 47 8 chr6 991266 991521 -188288033 + AluSx SINE Alu 39 303 -9 276 308 115 20 chr6 991521 991581 -188287973 + L3b LINE CR1 1346 1399 -184 2458 55 0 19 chr6 991621 991928 -188287626 + AluY SINE Alu 1 301 -10 15722 98 3 2 chr6 993295 996189 -188283365 - L1PA8 LINE L1 0 6172 3275 1513 209 6 3 chr6 996632 996958 -188282596 - L1M4 LINE L1 -1034 5112 4786 532 184 9 9 chr6 996961 997075 -188282479 + L1MC/D LINE L1 2297 2410 -3974 311 200 12 12 chr6 997216 997301 -188282253 + L1MC/D LINE L1 2474 2558 -3824 2894 233 109 23 chr6 997331 997664 -188281890 + L1MC/D LINE L1 2696 2999 -3383 2945 149 2 7 chr6 997664 998094 -188281460 - MSTA LTR MaLR 0 428 1 2894 233 109 23 chr6 998094 998790 -188280764 + L1MC/D LINE L1 2999 3813 -2569 1188 96 0 0 chr6 998790 998936 -188280618 + AluY SINE Alu 1 146 -165 1354 188 49 62 chr6 998936 999260 -188280294 + THE1C LTR MaLR 56 375 0 4716 219 27 16 chr6 999260 1000474 -188279080 + L1MC/D LINE L1 4363 5589 -793 263 230 50 50 chr6 1000690 1000790 -188278764 + L1MC/D LINE L1 6024 6123 -1921 632 284 72 55 chr6 1001027 1002059 -188277495 + L1ME3A LINE L1 4906 5927 -243 462 155 54 0 chr6 1002152 1002320 -188277234 + (TCTA)n Simple_repeat Simple_repeat 1 177 0 212 158 18 0 chr6 1002341 1002398 -188277156 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 556 163 29 6 chr6 1002428 1002600 -188276954 + (TCTA)n Simple_repeat Simple_repeat 3 178 0 987 254 75 18 chr6 1003071 1003460 -188276094 - LTR16A LTR ERVL 0 450 40 1919 182 28 23 chr6 1004050 1004485 -188275069 + L1MB7 LINE L1 5748 6184 0 216 218 36 0 chr6 1004986 1005041 -188274513 + L2 LINE L2 3216 3272 0 186 244 0 0 chr6 1005321 1005362 -188274192 - L2 LINE L2 -5 3308 3268 * 544 239 158 16 chr6 1005328 1005512 -188274042 - MIR SINE MIR -6 256 47 1551 194 56 48 chr6 1006148 1006525 -188273029 - MLT1B LTR MaLR -8 382 3 3197 176 125 3 chr6 1006757 1007421 -188272133 - MER49 LTR ERV1 0 923 179 300 27 0 0 chr6 1008766 1008803 -188270751 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 426 234 71 26 chr6 1011157 1011344 -188268210 - L1MC4a LINE L1 0 7995 7623 491 217 11 11 chr6 1011359 1011539 -188268015 + CT-rich Low_complexity Low_complexity 1 180 0 1612 121 0 0 chr6 1012921 1013145 -188266409 - AluSg/x SINE Alu -4 308 85 339 78 0 0 chr6 1013328 1013379 -188266175 + (CA)n Simple_repeat Simple_repeat 1 51 0 1289 245 233 70 chr6 1013954 1014894 -188264660 + L1MC4 LINE L1 6716 7808 0 1405 121 9 23 chr6 1015089 1015304 -188264250 + AluJo SINE Alu 58 269 -43 456 305 34 51 chr6 1017020 1017197 -188262357 - MIR3 SINE MIR -2 206 33 198 0 0 0 chr6 1017362 1017384 -188262170 + (CA)n Simple_repeat Simple_repeat 2 23 0 4024 163 40 19 chr6 1017384 1018145 -188261409 - L1MB3 LINE L1 -27 6156 5377 350 185 12 0 chr6 1018775 1018856 -188260698 + CT-rich Low_complexity Low_complexity 4 85 0 1760 209 57 27 chr6 1020155 1020595 -188258959 - MLT1D LTR MaLR -2 503 51 270 0 0 0 chr6 1020610 1020640 -188258914 + (TG)n Simple_repeat Simple_repeat 1 30 0 1129 226 66 8 chr6 1022700 1022957 -188256597 + MLT1A1 LTR MaLR 70 341 -24 1383 119 0 0 chr6 1022957 1023159 -188256395 - L1PA8 LINE L1 -867 5279 5078 6764 72 7 9 chr6 1023159 1024052 -188255502 + L1PA8 LINE L1 5276 6172 0 264 224 0 0 chr6 1024087 1024136 -188255418 + MLT1A1 LTR MaLR 315 363 -2 21 0 0 0 chr6 1024565 1024586 -188254968 + AT_rich Low_complexity Low_complexity 1 21 0 296 257 82 70 chr6 1025321 1025492 -188254062 - MER5B DNA MER1_type -2 176 4 * 526 279 84 44 chr6 1025492 1025739 -188253815 + MIR SINE MIR 7 261 -1 188 302 16 101 chr6 1027006 1027135 -188252419 - MIR3 SINE MIR -6 202 85 351 329 90 26 chr6 1027195 1027350 -188252204 - L2 LINE L2 0 3272 3108 421 288 79 10 chr6 1027473 1027658 -188251896 + MIR SINE MIR 12 200 -62 270 269 15 0 chr6 1028172 1028239 -188251315 - MIR3 SINE MIR -54 154 87 460 299 201 11 chr6 1028242 1028610 -188250944 - LTR16B LTR ERVL -24 440 3 780 324 107 21 chr6 1029043 1029668 -188249886 - ERVL LTR ERVL -2327 3437 2727 547 121 61 50 chr6 1029716 1029815 -188249739 - LTR12 LTR ERV1 0 714 615 296 198 66 22 chr6 1029818 1029909 -188249645 - LTR30 LTR ERV1 -80 642 548 1067 119 37 107 chr6 1029910 1030154 -188249400 - LTR12 LTR ERV1 -435 279 53 243 250 0 0 chr6 1030154 1030206 -188249348 - LTR30 LTR ERV1 -670 52 1 1612 306 88 36 chr6 1030270 1031126 -188248428 - ERVL LTR ERVL -2406 2590 1691 549 371 44 18 chr6 1031796 1032294 -188247260 - ERVL LTR ERVL -4483 513 3 238 231 213 37 chr6 1032298 1032514 -188247040 - LTR16B LTR ERVL -2 462 209 375 318 16 0 chr6 1033900 1034029 -188245525 + MER63A DNA MER1_type 63 193 -17 957 149 0 0 chr6 1035940 1036115 -188243439 + (GGGA)n Simple_repeat Simple_repeat 4 178 0 443 296 30 23 chr6 1036184 1036316 -188243238 + L2 LINE L2 3139 3271 -1 1435 186 164 0 chr6 1037564 1037876 -188241678 + MSTB LTR MaLR 16 378 -48 416 326 44 62 chr6 1038268 1038495 -188241059 + HAL1b LINE L1 1 223 -1125 24 24 0 24 chr6 1038511 1038531 -188241023 + AT_rich Low_complexity Low_complexity 1 20 -21 2774 19 0 0 chr6 1038531 1038849 -188240705 + AluYb8 SINE Alu 1 318 0 24 24 0 24 chr6 1038849 1038870 -188240684 + AT_rich Low_complexity Low_complexity 20 41 0 458 287 72 32 chr6 1038870 1039121 -188240433 + HAL1b LINE L1 232 492 -856 231 230 70 30 chr6 1039130 1039230 -188240324 + HAL1b LINE L1 634 737 -611 5269 201 49 16 chr6 1039442 1040713 -188238841 - L1M3 LINE L1 -622 5558 4219 2277 85 0 0 chr6 1040713 1041006 -188238548 - AluY SINE Alu -12 299 7 5269 201 49 16 chr6 1041006 1041202 -188238352 - L1M3 LINE L1 -1961 4219 4031 569 291 65 87 chr6 1041202 1041776 -188237778 + L1MC4a LINE L1 4695 5255 -891 215 152 22 0 chr6 1041790 1041836 -188237718 + (TG)n Simple_repeat Simple_repeat 2 48 0 1910 264 34 21 chr6 1041853 1042464 -188237090 + L1MC4a LINE L1 5284 5902 -1906 2040 123 0 13 chr6 1042595 1042905 -188236649 - AluSx SINE Alu -6 306 1 22 35 0 0 chr6 1042925 1042954 -188236600 + AT_rich Low_complexity Low_complexity 1 29 0 410 217 65 65 chr6 1043487 1043625 -188235929 - MER112 DNA MER1_type -7 253 116 327 335 103 44 chr6 1043661 1044461 -188235093 - L2 LINE L2 -18 3295 2423 2056 105 21 0 chr6 1045404 1045690 -188233864 + AluSg SINE Alu 1 292 -18 234 0 0 0 chr6 1045812 1045838 -188233716 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 196 374 159 6 chr6 1046130 1046293 -188233261 + MIR SINE MIR 56 243 -19 243 0 0 0 chr6 1047041 1047068 -188232486 + (TG)n Simple_repeat Simple_repeat 2 28 0 428 188 89 0 chr6 1048621 1048722 -188230832 - L1MB2 LINE L1 0 6171 6062 2826 147 31 4 chr6 1049409 1049891 -188229663 - L1MB3 LINE L1 -10 6173 5679 1658 232 57 5 chr6 1050053 1050380 -188229174 - L1 LINE L1 -2649 3497 3143 183 100 0 0 chr6 1050380 1050410 -188229144 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1658 232 57 5 chr6 1050410 1050610 -188228944 - L1 LINE L1 -3003 3143 2955 872 176 70 20 chr6 1054204 1054403 -188225151 - AluJo SINE Alu -19 293 85 2174 104 3 0 chr6 1054845 1055153 -188224401 + AluSc SINE Alu 1 309 0 1600 167 56 44 chr6 1055167 1055276 -188224278 + L1MA5 LINE L1 5937 6043 -257 2065 102 21 0 chr6 1055276 1055559 -188223995 + AluSx SINE Alu 12 300 -12 1600 167 56 44 chr6 1055559 1055809 -188223745 + L1MA5 LINE L1 6043 6300 0 217 359 88 28 chr6 1056976 1057193 -188222361 + MIR SINE MIR 1 230 -32 345 308 51 0 chr6 1057632 1057749 -188221805 - L2 LINE L2 -5 3308 3186 335 295 36 58 chr6 1057751 1057890 -188221664 - MER5B DNA MER1_type -32 146 11 302 276 141 49 chr6 1057902 1058065 -188221489 - L2 LINE L2 -508 2806 2629 3513 195 64 12 chr6 1058545 1059236 -188220318 - MER21B LTR ERV1 -123 740 14 192 285 105 40 chr6 1059295 1059523 -188220031 - L2 LINE L2 -647 2667 2425 2466 153 50 10 chr6 1059594 1059998 -188219556 - MSTC LTR MaLR -8 420 1 2019 161 26 16 chr6 1060167 1060553 -188219001 - MLT1B LTR MaLR 0 390 1 2488 65 0 0 chr6 1061168 1061475 -188218079 + AluY SINE Alu 1 307 -4 393 275 9 28 chr6 1061545 1061654 -188217900 + L2 LINE L2 3162 3268 -4 220 331 6 0 chr6 1062026 1062198 -188217356 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 316 306 6 0 chr6 1062228 1062401 -188217153 + (CAGAGA)n Simple_repeat Simple_repeat 5 178 0 696 262 17 17 chr6 1062893 1063065 -188216489 - MER20 DNA MER1_type -10 209 38 2360 67 0 0 chr6 1064603 1064901 -188214653 + AluY SINE Alu 1 298 -13 241 250 20 50 chr6 1065291 1065391 -188214163 - L1ME4a LINE L1 -61 6060 5964 609 169 17 25 chr6 1065397 1065515 -188214039 - FLAM_C SINE Alu -14 129 13 500 261 11 44 chr6 1065635 1065815 -188213739 - MER5B DNA MER1_type 0 178 5 3311 170 18 24 chr6 1066906 1067214 -188212340 + L1MB3 LINE L1 5519 5827 -356 2381 51 0 3 chr6 1067214 1067509 -188212045 + AluY SINE Alu 1 294 -17 3311 170 18 24 chr6 1067509 1067869 -188211685 + L1MB3 LINE L1 5827 6183 0 571 240 74 88 chr6 1068341 1068607 -188210947 - L1MC4 LINE L1 0 8042 7781 451 177 10 0 chr6 1068607 1068703 -188210851 + L1MB2 LINE L1 6073 6169 -2 571 240 74 88 chr6 1068703 1068799 -188210755 - L1MC4 LINE L1 -261 7781 7685 21 0 0 0 chr6 1068810 1068831 -188210723 + AT_rich Low_complexity Low_complexity 1 21 0 522 163 17 22 chr6 1068837 1069015 -188210539 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 4061 241 60 12 chr6 1069054 1070218 -188209336 - L1MC4 LINE L1 -366 7676 6457 1397 154 16 36 chr6 1070465 1070822 -188208732 + Tigger2a DNA MER2_type 1 444 0 257 330 36 0 chr6 1071161 1071273 -188208281 - MLT1I LTR MaLR 0 409 294 361 285 42 76 chr6 1072997 1073260 -188206294 - MER102b DNA MER1_type 0 341 88 2074 118 13 0 chr6 1073675 1073980 -188205574 + AluSx SINE Alu 1 309 -3 352 335 80 4 chr6 1074046 1074285 -188205269 - MIR SINE MIR -3 259 3 195 302 16 0 chr6 1075423 1075486 -188204068 + MIR SINE MIR 82 145 -63 519 301 88 19 chr6 1075967 1076183 -188203371 - L1P LINE L1 -3089 3057 2827 505 161 32 0 chr6 1076189 1076282 -188203272 + L1PA16 LINE L1 6061 6156 -10 306 199 0 23 chr6 1077103 1077274 -188202280 + (TCTCTG)n Simple_repeat Simple_repeat 4 170 0 721 168 4 4 chr6 1077330 1077580 -188201974 + (TG)n Simple_repeat Simple_repeat 1 250 0 303 282 12 0 chr6 1078676 1078761 -188200793 - MER81 DNA DNA -27 87 2 1659 155 28 0 chr6 1079379 1079669 -188199885 - AluJo SINE Alu -14 298 1 181 194 0 28 chr6 1079812 1079848 -188199706 + L2 LINE L2 3227 3261 -11 244 234 117 97 chr6 1080647 1080792 -188198762 - MIR3 SINE MIR -30 178 31 652 94 0 0 chr6 1080800 1080885 -188198669 - AluJ/FLAM SINE Alu -217 95 11 428 247 23 40 chr6 1080949 1081123 -188198431 + L1MC5 LINE L1 7741 7911 -50 182 250 14 0 chr6 1081147 1081219 -188198335 + (TA)n Simple_repeat Simple_repeat 1 73 0 2148 101 6 19 chr6 1081356 1081673 -188197881 - AluSq SINE Alu 0 313 1 321 232 12 161 chr6 1081808 1081976 -188197578 - L2 LINE L2 -6 3307 3165 1106 202 164 13 chr6 1082124 1082441 -188197113 + MLT1A1 LTR MaLR 1 365 0 578 214 9 0 chr6 1082754 1082866 -188196688 + MER81 DNA DNA 2 114 0 21 0 0 0 chr6 1083483 1083504 -188196050 + AT_rich Low_complexity Low_complexity 1 21 0 2052 109 13 0 chr6 1084381 1084683 -188194871 - AluSq SINE Alu -7 306 1 826 199 92 24 chr6 1085102 1085308 -188194246 + MER58A DNA MER1_type 1 220 -4 2216 85 7 0 chr6 1087419 1087714 -188191840 + AluSq SINE Alu 1 297 -16 1183 109 55 0 chr6 1088311 1088494 -188191060 - L1PA14 LINE L1 -2 6159 5967 250 314 32 85 chr6 1089629 1089817 -188189737 - MIR SINE MIR -24 238 61 235 279 44 15 chr6 1090655 1090723 -188188831 - MIR3 SINE MIR -136 72 3 242 325 42 8 chr6 1090964 1091084 -188188470 + MIR SINE MIR 118 241 -21 611 327 44 31 chr6 1091104 1091330 -188188224 - MIR SINE MIR -23 239 11 2275 94 0 7 chr6 1091967 1092275 -188187279 + AluSq SINE Alu 1 306 -7 305 295 30 78 chr6 1092463 1092529 -188187025 - L1M4 LINE L1 -3316 2830 2762 2152 115 0 0 chr6 1092529 1092833 -188186721 - AluY SINE Alu -7 304 1 305 295 30 78 chr6 1092833 1092932 -188186622 - L1M4 LINE L1 -3384 2762 2673 286 277 170 0 chr6 1093451 1093563 -188185991 - L2 LINE L2 -4 3309 3179 297 167 0 0 chr6 1094088 1094136 -188185418 - L1MEd LINE L1 -5985 134 87 349 224 254 15 chr6 1094449 1094583 -188184971 + MIR SINE MIR 19 184 -78 186 351 91 0 chr6 1095121 1095198 -188184356 + MIR SINE MIR 179 262 0 261 286 31 10 chr6 1095200 1095298 -188184256 - L1MEd LINE L1 -6015 104 5 213 209 36 164 chr6 1096045 1096122 -188183432 - L2 LINE L2 -30 3283 3222 2113 110 0 3 chr6 1096122 1096422 -188183132 + AluSx SINE Alu 1 299 -13 213 209 36 164 chr6 1096422 1096454 -188183100 - L2 LINE L2 -91 3222 3188 373 316 58 23 chr6 1096470 1096641 -188182913 - MIR SINE MIR -8 254 78 650 314 47 13 chr6 1097525 1097761 -188181793 - MIR SINE MIR 0 262 19 1254 296 101 25 chr6 1097769 1098614 -188180940 - L1MC4a LINE L1 -867 5492 5272 2435 53 0 0 chr6 1098817 1099120 -188180434 - AluY SINE Alu -8 303 1 2088 103 0 3 chr6 1099583 1099874 -188179680 - AluSg SINE Alu -20 290 1 1149 134 0 6 chr6 1100479 1100651 -188178903 - Tigger1 DNA MER2_type 0 2418 2248 381 136 0 45 chr6 1100653 1100719 -188178835 - Tigger1 DNA MER2_type -2355 63 1 2037 96 27 7 chr6 1101066 1101358 -188178196 - AluSg SINE Alu -11 299 2 322 288 12 0 chr6 1101942 1102022 -188177532 + L2 LINE L2 3184 3264 -49 21 36 0 0 chr6 1102216 1102244 -188177310 + AT_rich Low_complexity Low_complexity 1 28 0 2030 118 20 0 chr6 1102318 1102622 -188176932 + AluSx SINE Alu 1 310 -2 232 250 50 19 chr6 1103089 1103249 -188176305 + (CA)n Simple_repeat Simple_repeat 1 165 0 2235 88 0 16 chr6 1103441 1103747 -188175807 + AluSx SINE Alu 1 301 -11 264 179 0 39 chr6 1104250 1104328 -188175226 + (CAGG)n Simple_repeat Simple_repeat 1 75 0 1030 253 101 58 chr6 1104462 1105117 -188174437 - L1MC5 LINE L1 -30 7931 7249 728 103 9 0 chr6 1105191 1105307 -188174247 + (GGAA)n Simple_repeat Simple_repeat 3 119 0 24 0 0 0 chr6 1106370 1106394 -188173160 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr6 1106721 1106750 -188172804 + AT_rich Low_complexity Low_complexity 1 29 0 225 94 0 0 chr6 1107916 1107948 -188171606 + (CAGA)n Simple_repeat Simple_repeat 1 32 0 429 304 32 0 chr6 1109857 1109982 -188169572 - L2 LINE L2 0 3313 3185 403 335 54 16 chr6 1110165 1110350 -188169204 - MIR3 SINE MIR -7 201 10 309 330 57 31 chr6 1111639 1111833 -188167721 - MIR3 SINE MIR -7 201 3 182 167 62 0 chr6 1113112 1113160 -188166394 + GA-rich Low_complexity Low_complexity 4 54 0 213 242 55 66 chr6 1114659 1114750 -188164804 - L2 LINE L2 -9 3263 3174 1733 193 42 28 chr6 1115115 1115473 -188164081 - MLT1A1 LTR MaLR -2 363 1 220 302 35 43 chr6 1115508 1115624 -188163930 - L2 LINE L2 0 3272 3158 307 224 42 159 chr6 1116944 1117208 -188162346 + MER112 DNA MER1_type 1 233 -27 1497 206 59 6 chr6 1117737 1118057 -188161497 - MER58B DNA MER1_type -4 337 1 1716 151 27 38 chr6 1118628 1118920 -188160634 + AluJo SINE Alu 1 289 -23 288 0 0 0 chr6 1119865 1119897 -188159657 + (TG)n Simple_repeat Simple_repeat 2 33 0 2604 192 51 25 chr6 1119897 1120206 -188159348 - L1MB7 LINE L1 -11 6173 5874 1838 134 0 81 chr6 1120206 1120526 -188159028 - AluJo SINE Alu -14 298 5 2604 192 51 25 chr6 1120526 1120821 -188158733 - L1MB7 LINE L1 -310 5874 5553 1611 232 21 3 chr6 1120851 1121226 -188158328 - L1MA10 LINE L1 -7 6327 5946 2661 183 13 37 chr6 1121260 1121736 -188157818 + L1MA9 LINE L1 5042 5483 -819 236 136 0 0 chr6 1121736 1121780 -188157774 + LTR66 LTR ERVL 393 436 -174 2661 183 13 37 chr6 1121780 1122215 -188157339 + L1MA9 LINE L1 5483 5927 -375 318 26 0 0 chr6 1123023 1123062 -188156492 + (CCCTAA)n Simple_repeat Simple_repeat 6 44 0 1552 201 87 13 chr6 1125049 1125438 -188154116 + MSTC LTR MaLR 10 427 -1 1718 196 102 8 chr6 1127101 1127463 -188152091 + MSTD LTR MaLR 1 396 0 458 289 64 17 chr6 1127579 1127752 -188151802 - MLT1J LTR MaLR -330 181 1 631 243 10 2 chr6 1128587 1128759 -188150795 + L1P1 LINE L1 5604 5777 -362 604 240 8 0 chr6 1128968 1129097 -188150457 + AluJo SINE Alu 2 131 -181 1092 46 0 0 chr6 1129097 1129228 -188150326 - L1P2 LINE L1 -385 5770 5640 25 31 0 0 chr6 1129241 1129273 -188150281 + AT_rich Low_complexity Low_complexity 1 32 0 1207 151 0 0 chr6 1129273 1129445 -188150109 + AluJo SINE Alu 118 289 -23 573 290 106 44 chr6 1131370 1131691 -188147863 + MLT1J LTR MaLR 1 341 -170 397 274 115 0 chr6 1132456 1132569 -188146985 + MER94 DNA DNA 2 127 -7 2048 114 31 3 chr6 1134740 1135030 -188144524 + AluSx SINE Alu 1 298 -14 1228 63 11 6 chr6 1135052 1135227 -188144327 + (GAAA)n Simple_repeat Simple_repeat 4 179 0 378 258 31 31 chr6 1135807 1135935 -188143619 - LTR67 LTR ERVL 0 557 430 447 184 0 0 chr6 1136326 1136413 -188143141 + (TG)n Simple_repeat Simple_repeat 1 87 0 1737 164 9 50 chr6 1138027 1138350 -188141204 + AluJo SINE Alu 1 310 -2 238 232 0 53 chr6 1139820 1140010 -188139544 + CT-rich Low_complexity Low_complexity 1 180 0 662 182 75 44 chr6 1140986 1141145 -188138409 + L1ME LINE L1 138 301 -5904 759 277 152 16 chr6 1141179 1141759 -188137795 + L1ME LINE L1 703 1207 -4998 5658 131 51 30 chr6 1142033 1142383 -188137171 - L1MA5 LINE L1 -3 6297 5956 2320 84 13 0 chr6 1142383 1142682 -188136872 - AluSg SINE Alu -7 303 1 5658 131 51 30 chr6 1142682 1143862 -188135692 - L1MA5 LINE L1 -344 5956 4550 2296 61 7 0 chr6 1145664 1145983 -188133571 - AluY SINE Alu 0 321 1 2273 95 17 0 chr6 1146437 1146733 -188132821 + AluSp SINE Alu 1 301 -12 240 226 65 0 chr6 1147039 1147101 -188132453 + L2 LINE L2 3159 3224 -48 4376 257 83 12 chr6 1147284 1149209 -188130345 + L1MEc LINE L1 741 2805 -3410 515 77 0 121 chr6 1149209 1149261 -188130293 - MADE1 DNA Mariner 0 80 42 2147 114 7 14 chr6 1149261 1149558 -188129996 + AluSp SINE Alu 1 295 -18 515 77 0 121 chr6 1149558 1149596 -188129958 - MADE1 DNA Mariner -38 42 1 4376 257 83 12 chr6 1149596 1149877 -188129677 + L1MEc LINE L1 2805 3064 -3151 275 242 21 42 chr6 1151042 1151136 -188128418 - Charlie7 DNA MER1_type -5 2607 2516 4343 119 45 126 chr6 1151136 1151870 -188127684 + Tigger3b DNA MER2_type 2 794 -2235 993 89 0 0 chr6 1151870 1151994 -188127560 - AluSp/q SINE Alu -17 296 173 4343 119 45 126 chr6 1151994 1152407 -188127147 + Tigger3b DNA MER2_type 794 1177 -1852 2502 84 0 0 chr6 1152407 1152717 -188126837 - AluY SINE Alu -1 310 1 4343 119 45 126 chr6 1152717 1152769 -188126785 + Tigger3b DNA MER2_type 1177 1232 0 668 94 44 44 chr6 1154714 1154894 -188124660 + (CAGAGA)n Simple_repeat Simple_repeat 1 180 0 418 220 7 11 chr6 1154894 1155177 -188124377 + GA-rich Low_complexity Low_complexity 1 281 0 2076 146 108 10 chr6 1156565 1156955 -188122599 - MSTA LTR MaLR 0 428 1 451 268 8 0 chr6 1157482 1157605 -188121949 - MER58B DNA MER1_type 0 341 218 718 196 39 67 chr6 1157876 1158055 -188121499 + MER58A DNA MER1_type 43 216 -8 215 154 0 26 chr6 1158994 1159033 -188120521 + CT-rich Low_complexity Low_complexity 4 41 0 3605 121 13 0 chr6 1159290 1159836 -188119718 - L1PB4 LINE L1 -4 6152 5600 260 232 0 18 chr6 1161852 1161908 -188117646 + CT-rich Low_complexity Low_complexity 3 57 0 657 225 62 25 chr6 1162978 1163138 -188116416 + MER63A DNA MER1_type 10 175 -35 5303 122 46 21 chr6 1163376 1163895 -188115659 + MER4D LTR ERV1 1 506 -366 2619 106 8 13 chr6 1163895 1164272 -188115282 + THE1C LTR MaLR 1 375 0 10262 105 40 45 chr6 1164272 1165858 -188113696 + THE1C-int LTR MaLR 1 1578 -2 5303 122 46 21 chr6 1165858 1165871 -188113683 + MER4D LTR ERV1 506 517 -355 2410 129 11 11 chr6 1165871 1166244 -188113310 + THE1C LTR MaLR 1 373 -2 5303 122 46 21 chr6 1166244 1166560 -188112994 + MER4D LTR ERV1 517 872 0 375 193 0 36 chr6 1166743 1166826 -188112728 - Charlie1 DNA MER1_type -7 2754 2675 2900 206 72 20 chr6 1166878 1167568 -188111986 - Charlie1 DNA MER1_type -225 2536 1811 2646 92 29 46 chr6 1167574 1167988 -188111566 - L1PA15 LINE L1 -2 6163 5757 1599 83 0 62 chr6 1167989 1168230 -188111324 + L1P4 LINE L1 5470 5695 -470 683 292 40 40 chr6 1168235 1168605 -188110949 - Charlie1 DNA MER1_type -954 1807 1438 200 135 0 54 chr6 1168625 1168662 -188110892 - MER5A DNA MER1_type -152 37 3 22 56 0 0 chr6 1168900 1168936 -188110618 + AT_rich Low_complexity Low_complexity 1 36 0 1721 39 5 0 chr6 1168937 1169145 -188110409 - L1PA4 LINE L1 0 6155 5947 405 331 7 0 chr6 1169360 1169505 -188110049 + MIR SINE MIR 117 262 0 25 0 0 0 chr6 1170114 1170139 -188109415 + AT_rich Low_complexity Low_complexity 1 25 0 282 199 62 155 chr6 1170154 1170201 -188109353 - MLT1L LTR MaLR -4 611 561 2610 7 0 0 chr6 1170201 1170478 -188109076 + AluYa5 SINE Alu 35 311 0 282 199 62 155 chr6 1170478 1170591 -188108963 - MLT1L LTR MaLR -54 561 466 1164 157 42 0 chr6 1172017 1172234 -188107320 + L1MA9 LINE L1 5919 6144 -168 661 138 36 29 chr6 1172243 1172381 -188107173 - L1MA7 LINE L1 -1 6290 6152 982 149 36 10 chr6 1172381 1172573 -188106981 + L1MA9 LINE L1 6114 6312 0 305 340 43 7 chr6 1172654 1172795 -188106759 - MIR3 SINE MIR -15 193 48 239 274 154 8 chr6 1174336 1174453 -188105101 - MLT1L LTR MaLR -106 436 303 * 439 232 220 24 chr6 1174429 1174684 -188104870 - MLT1G3 LTR MaLR -200 395 4 228 192 19 19 chr6 1176152 1176204 -188103350 + MER94 DNA DNA 6 57 -77 1233 152 22 9 chr6 1176273 1176497 -188103057 + L1MA8 LINE L1 6054 6280 -11 276 231 0 0 chr6 1176515 1176567 -188102987 + MER94 DNA DNA 68 119 -15 1832 209 104 14 chr6 1176676 1177139 -188102415 + MLT1D LTR MaLR 1 653 -1 686 191 92 13 chr6 1177182 1177334 -188102220 - AluJb SINE Alu -12 300 137 367 271 80 0 chr6 1177597 1177774 -188101780 - MIR SINE MIR 0 262 68 445 251 57 11 chr6 1177846 1178021 -188101533 - MIR SINE MIR -34 228 46 301 253 12 12 chr6 1178644 1178727 -188100827 + MIR3 SINE MIR 108 190 -18 205 318 0 0 chr6 1178748 1178811 -188100743 + GA-rich Low_complexity Low_complexity 3 65 0 2482 85 3 0 chr6 1179672 1179978 -188099576 - AluSp SINE Alu -6 307 1 2218 95 3 3 chr6 1180416 1180699 -188098855 - AluSc SINE Alu -26 283 1 7012 69 8 0 chr6 1181177 1182180 -188097374 - L1PA7 LINE L1 -4 6150 5145 2143 69 10 3 chr6 1182181 1182470 -188097084 + L1PA7 LINE L1 4873 5163 -983 1739 162 98 0 chr6 1182909 1183224 -188096330 + MER7A DNA MER2_type 1 344 -2 250 262 16 0 chr6 1185256 1185317 -188094237 - L2 LINE L2 -25 3247 3186 2160 112 25 0 chr6 1187535 1187821 -188091733 + AluSg SINE Alu 1 293 -17 23 33 0 0 chr6 1188808 1188838 -188090716 + AT_rich Low_complexity Low_complexity 1 30 0 282 303 31 31 chr6 1189072 1189234 -188090320 + L1ME LINE L1 306 467 -5905 395 271 25 109 chr6 1189403 1189877 -188089677 + L1ME LINE L1 1186 1609 -4775 1576 112 0 14 chr6 1189878 1190101 -188089453 - AluSg/x SINE Alu -5 305 86 1028 188 5 30 chr6 1190170 1190372 -188089182 - AluJb SINE Alu -9 303 107 274 291 94 0 chr6 1190381 1190508 -188089046 + MIR SINE MIR 124 262 0 346 270 99 34 chr6 1191262 1191495 -188088059 - MIR SINE MIR -1 261 14 201 175 0 0 chr6 1192431 1192471 -188087083 + CT-rich Low_complexity Low_complexity 1 40 0 242 253 51 0 chr6 1192999 1193078 -188086476 + L2 LINE L2 3190 3272 0 384 141 62 18 chr6 1193533 1193817 -188085737 + (TAGA)n Simple_repeat Simple_repeat 1 296 0 504 72 0 0 chr6 1193830 1193899 -188085655 + (CAGA)n Simple_repeat Simple_repeat 3 71 0 2355 237 78 62 chr6 1194298 1194872 -188084682 + L1MEc LINE L1 34 631 -5765 540 148 30 20 chr6 1194872 1194973 -188084581 + U13 snRNA snRNA 2 103 -1 2355 237 78 62 chr6 1194973 1195360 -188084194 + L1MEc LINE L1 631 1010 -5386 402 303 8 0 chr6 1195458 1195580 -188083974 + MER94 DNA DNA 5 127 -7 2056 120 62 14 chr6 1197849 1198207 -188081347 + THE1C LTR MaLR 1 375 0 911 168 7 19 chr6 1198334 1198489 -188081065 + FRAM SINE Alu 1 152 -24 274 217 14 0 chr6 1199265 1199334 -188080220 + MIR3 SINE MIR 118 187 -21 26 30 0 0 chr6 1200336 1200369 -188079185 + AT_rich Low_complexity Low_complexity 1 33 0 251 246 204 24 chr6 1200497 1200664 -188078890 + MIR SINE MIR 66 262 0 45 69 0 0 chr6 1200672 1200759 -188078795 + AT_rich Low_complexity Low_complexity 1 87 0 513 232 176 67 chr6 1200892 1201462 -188078092 + L1ME4a LINE L1 5481 6121 0 1043 133 62 0 chr6 1202277 1202472 -188077082 - L1MA8 LINE L1 -1 6290 6084 551 277 94 89 chr6 1202549 1202921 -188076633 + MLT1J LTR MaLR 107 480 -31 2555 216 104 3 chr6 1203184 1203894 -188075660 + L1MEc LINE L1 2502 3283 -2932 308 287 132 49 chr6 1203947 1204212 -188075342 + L2 LINE L2 3023 3309 -4 286 394 38 22 chr6 1204431 1204748 -188074806 - L2 LINE L2 -357 2957 2636 526 232 151 16 chr6 1205521 1205706 -188073848 + MIR SINE MIR 47 256 -6 874 225 35 22 chr6 1206720 1206951 -188072603 + MIR SINE MIR 12 245 -17 202 257 0 54 chr6 1209531 1209605 -188069949 - MIR SINE MIR -128 134 65 198 309 60 0 chr6 1211957 1212041 -188067513 - L2 LINE L2 -460 2854 2766 2411 199 17 2 chr6 1212582 1213059 -188066495 - MER31A LTR ERV1 0 485 2 219 255 0 109 chr6 1213480 1213664 -188065890 + (CATCC)n Simple_repeat Simple_repeat 4 167 0 209 295 46 29 chr6 1213881 1214054 -188065500 + (CCCCAG)n Simple_repeat Simple_repeat 2 177 0 219 310 55 0 chr6 1214068 1214213 -188065341 + (CCCCAG)n Simple_repeat Simple_repeat 2 154 0 201 182 55 18 chr6 1214231 1214286 -188065268 + GA-rich Low_complexity Low_complexity 1 57 0 698 150 87 40 chr6 1214631 1214804 -188064750 - MER53 DNA DNA 0 189 9 2200 92 0 20 chr6 1215687 1215982 -188063572 + AluSc SINE Alu 1 289 -20 309 276 130 73 chr6 1216315 1216363 -188063191 + MIR SINE MIR 49 93 -169 1797 141 47 81 chr6 1216363 1216747 -188062807 + THE1C LTR MaLR 5 375 0 309 276 130 73 chr6 1216747 1216890 -188062664 + MIR SINE MIR 93 251 -11 240 339 46 9 chr6 1217101 1217210 -188062344 + MIR SINE MIR 20 132 -76 587 219 55 34 chr6 1217634 1217780 -188061774 - MER63 DNA MER1_type -57 779 5 348 219 77 45 chr6 1218768 1218923 -188060631 + L1MC/D LINE L1 3068 3227 -2919 604 310 87 46 chr6 1219485 1220623 -188058931 + L1MC/D LINE L1 3623 4836 -1310 276 305 64 47 chr6 1220674 1221018 -188058536 + L1MC/D LINE L1 4782 5131 -1015 406 283 102 58 chr6 1221150 1221773 -188057781 + L1MC/D LINE L1 5175 5824 -747 578 193 7 43 chr6 1221777 1221917 -188057637 + L1ME2 LINE L1 5701 5835 -329 632 289 4 41 chr6 1221954 1222196 -188057358 + L1ME2 LINE L1 5919 6151 -13 293 0 27 0 chr6 1222919 1222956 -188056598 + (TG)n Simple_repeat Simple_repeat 2 39 0 267 183 127 14 chr6 1223218 1223289 -188056265 + MER69 DNA AcHobo 2448 2526 0 1600 174 11 3 chr6 1223669 1223951 -188055603 + AluJb SINE Alu 1 284 -28 466 230 122 0 chr6 1225121 1225260 -188054294 + MIR SINE MIR 76 231 -31 23 54 0 0 chr6 1225310 1225347 -188054207 + AT_rich Low_complexity Low_complexity 1 37 0 991 156 146 35 chr6 1226936 1227135 -188052419 - Tigger2a DNA MER2_type -26 418 198 316 209 198 0 chr6 1227124 1227215 -188052339 - Tigger2a DNA MER2_type -325 109 1 * 353 271 64 53 chr6 1227657 1227845 -188051709 - MIR SINE MIR -26 236 47 813 228 25 10 chr6 1228149 1228351 -188051203 + MER20 DNA MER1_type 1 205 -14 372 59 0 0 chr6 1228390 1228441 -188051113 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 280 216 0 81 chr6 1230385 1230496 -188049058 - MIR3 SINE MIR -18 190 89 1052 142 6 11 chr6 1230541 1230717 -188048837 - L1MA1 LINE L1 0 6302 6128 180 0 0 0 chr6 1232950 1232970 -188046584 + (TTC)n Simple_repeat Simple_repeat 2 21 0 848 156 0 8 chr6 1232975 1233103 -188046451 - FLAM_C SINE Alu -16 127 1 205 279 0 0 chr6 1233168 1233229 -188046325 - MIR SINE MIR -80 128 68 298 266 46 18 chr6 1233615 1233724 -188045830 - L2 LINE L2 -18 3295 3184 618 333 92 51 chr6 1233729 1234251 -188045303 - L2 LINE L2 -998 2316 1738 1534 65 0 0 chr6 1234251 1234450 -188045104 - L1PA4 LINE L1 0 6155 5957 618 333 92 51 chr6 1234450 1234851 -188044703 - L2 LINE L2 -1576 1738 1355 319 275 75 81 chr6 1235246 1235541 -188044013 - L2 LINE L2 -2604 710 418 1010 156 75 15 chr6 1235657 1235856 -188043698 - MER20 DNA MER1_type 0 219 9 196 191 106 0 chr6 1237691 1237738 -188041816 - L2 LINE L2 0 3313 3262 792 212 31 45 chr6 1237813 1238035 -188041519 - MER20 DNA MER1_type 0 219 1 856 287 5 0 chr6 1238842 1239065 -188040489 - MER58A DNA MER1_type 0 224 1 210 338 0 0 chr6 1239260 1239331 -188040223 - MIR3 SINE MIR -49 159 89 849 202 17 77 chr6 1240927 1241160 -188038394 + MER20 DNA MER1_type 1 219 0 2083 107 41 7 chr6 1241740 1242031 -188037523 + AluSx SINE Alu 1 301 -11 263 26 51 0 chr6 1244890 1244929 -188034625 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 189 107 0 0 chr6 1245163 1245191 -188034363 + (CACCAT)n Simple_repeat Simple_repeat 5 32 0 569 207 22 0 chr6 1245282 1245509 -188034045 - L1MA9 LINE L1 -21 6291 5964 2461 77 3 0 chr6 1245518 1245818 -188033736 - AluSp SINE Alu -12 301 1 484 246 60 24 chr6 1248208 1248375 -188031179 - MIR SINE MIR -73 189 17 241 178 0 0 chr6 1249078 1249123 -188030431 - L1MC4 LINE L1 -1339 6703 6659 21 0 0 0 chr6 1250085 1250106 -188029448 + AT_rich Low_complexity Low_complexity 1 21 0 230 324 0 14 chr6 1250125 1250199 -188029355 + L2 LINE L2 3019 3091 -181 621 247 95 55 chr6 1250793 1251156 -188028398 + LTR67 LTR ERVL 116 548 -9 342 268 78 33 chr6 1253468 1253621 -188025933 + MIR SINE MIR 26 185 -77 1000 133 40 0 chr6 1253966 1254139 -188025415 + L1MA8 LINE L1 6111 6290 -1 730 214 330 15 chr6 1254247 1254384 -188025170 + MLT1F LTR MaLR 1 94 -448 2437 86 0 0 chr6 1254384 1254688 -188024866 + AluSg SINE Alu 1 304 -6 730 214 330 15 chr6 1254688 1254962 -188024592 + MLT1F LTR MaLR 94 542 0 217 219 0 0 chr6 1254969 1255010 -188024544 + (CA)n Simple_repeat Simple_repeat 2 42 0 2993 224 122 22 chr6 1256148 1257177 -188022377 + L1M4 LINE L1 3909 5040 -1106 5752 119 7 8 chr6 1257177 1258772 -188020782 - L1PA13 LINE L1 0 6163 4549 218 125 25 0 chr6 1260489 1260529 -188019025 + T-rich Low_complexity Low_complexity 3 43 0 1663 128 132 0 chr6 1260698 1260964 -188018590 - AluSq SINE Alu -11 302 2 2162 115 0 10 chr6 1261383 1261695 -188017859 - AluSc SINE Alu 0 309 1 2154 172 13 0 chr6 1262551 1262929 -188016625 + MLT1B LTR MaLR 1 383 -7 195 69 0 0 chr6 1264344 1264373 -188015181 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 240 273 0 0 chr6 1265144 1265199 -188014355 + (CA)n Simple_repeat Simple_repeat 2 56 0 318 23 23 0 chr6 1265472 1265515 -188014039 + AluY SINE Alu 1 44 -256 2508 81 3 0 chr6 1265515 1265824 -188013730 + AluY SINE Alu 1 310 -1 1894 135 17 14 chr6 1266049 1266345 -188013209 + AluSx SINE Alu 1 297 -15 365 219 14 0 chr6 1266345 1266418 -188013136 + Tigger7 DNA MER2_type 1 74 -265 14670 125 20 6 chr6 1266427 1268620 -188010934 + Tigger1 DNA MER2_type 2 2227 -191 1182 82 44 0 chr6 1268876 1269061 -188010493 - AluY SINE Alu 0 307 116 883 180 28 28 chr6 1269066 1269244 -188010310 + Tigger1 DNA MER2_type 2241 2418 0 1424 114 0 82 chr6 1269459 1269714 -188009840 + Tigger7 DNA MER2_type 2246 2479 -8 398 300 23 8 chr6 1269979 1270109 -188009445 - MIR3 SINE MIR -40 168 37 320 318 227 14 chr6 1270112 1270754 -188008800 - L3 LINE CR1 -1 1576 798 739 254 28 19 chr6 1270789 1271003 -188008551 + L1MA9 LINE L1 6087 6300 0 397 304 108 19 chr6 1271232 1271390 -188008164 - L3 LINE CR1 -1072 505 334 393 100 0 0 chr6 1271617 1271667 -188007887 + AluJ/FLAM SINE Alu 10 59 -243 228 356 7 52 chr6 1272820 1272955 -188006599 + MIR SINE MIR 20 148 -114 1778 166 14 14 chr6 1273087 1273376 -188006178 + AluJo SINE Alu 4 292 -20 2049 187 62 2 chr6 1274607 1275030 -188004524 + L1MB3 LINE L1 5736 6183 0 1638 160 71 11 chr6 1275043 1275324 -188004230 + AluJo SINE Alu 1 298 -14 235 274 137 74 chr6 1276362 1276421 -188003133 + L2 LINE L2 2967 3021 -251 2072 127 0 48 chr6 1276421 1276737 -188002817 + AluJo SINE Alu 1 301 -11 235 274 137 74 chr6 1276737 1276947 -188002607 + L2 LINE L2 3021 3253 -19 1256 217 75 70 chr6 1278441 1278878 -188000676 - MER63C DNA MER1_type 0 1556 258 1838 141 62 3 chr6 1280295 1280601 -187998953 - MER2 DNA MER2_type 0 345 22 2683 145 121 64 chr6 1280601 1281182 -187998372 + LTR18B LTR ERVL 1 614 0 3591 118 30 4 chr6 1281378 1281938 -187997616 + L1MA4A LINE L1 5717 6291 -12 3798 177 8 28 chr6 1283012 1283770 -187995784 + L1MB3 LINE L1 5434 6176 -7 299 305 28 71 chr6 1283914 1284055 -187995499 + L2 LINE L2 3134 3268 -4 237 387 13 0 chr6 1284356 1284511 -187995043 - L2 LINE L2 -2493 821 665 685 176 58 88 chr6 1284616 1284665 -187994889 - MER3 DNA MER1_type -8 201 152 653 225 8 0 chr6 1284665 1284794 -187994760 + FLAM_A SINE Alu 1 130 -3 685 176 58 88 chr6 1284794 1284949 -187994605 - MER3 DNA MER1_type -57 152 3 712 30 20 20 chr6 1285255 1285356 -187994198 + L1PA13 LINE L1 6063 6163 0 1124 189 7 88 chr6 1285604 1285900 -187993654 + MLT1A1 LTR MaLR 44 315 -50 365 309 132 7 chr6 1285972 1286124 -187993430 + MER5B DNA MER1_type 3 173 -5 273 322 132 0 chr6 1286674 1286826 -187992728 - MIR3 SINE MIR -7 201 30 378 239 43 15 chr6 1287020 1287152 -187992402 - MIR SINE MIR -61 147 24 1200 204 109 18 chr6 1288365 1288694 -187990860 + MLT1A1 LTR MaLR 7 365 0 198 103 0 0 chr6 1288749 1288778 -187990776 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2153 200 85 14 chr6 1288846 1289352 -187990202 - MER67A LTR ERV1 -1 542 1 29 70 0 0 chr6 1290823 1290880 -187988674 + AT_rich Low_complexity Low_complexity 1 57 0 962 237 74 18 chr6 1291247 1291655 -187987899 + MLT1J LTR MaLR 1 511 0 297 164 66 0 chr6 1293207 1293268 -187986286 - MIR SINE MIR -72 190 126 240 174 148 61 chr6 1294492 1294607 -187984947 - MER112 DNA MER1_type -91 169 45 259 248 53 71 chr6 1294762 1294875 -187984679 + MIR SINE MIR 80 190 -72 1683 184 125 3 chr6 1295015 1295368 -187984186 + MSTD LTR MaLR 1 396 0 904 309 58 42 chr6 1296156 1296616 -187982938 - L1ME1 LINE L1 -310 5856 5391 665 275 39 5 chr6 1296680 1296887 -187982667 - MIR SINE MIR -26 236 23 252 265 153 24 chr6 1297628 1297798 -187981756 + MIR SINE MIR 34 225 -37 207 335 67 12 chr6 1298476 1298640 -187980914 - MIR SINE MIR -62 200 28 437 349 0 0 chr6 1299460 1299612 -187979942 - MIR3 SINE MIR -10 198 47 200 333 0 0 chr6 1299670 1299724 -187979830 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 232 0 0 chr6 1299750 1299832 -187979722 + (CATA)n Simple_repeat Simple_repeat 4 85 0 253 69 0 103 chr6 1299836 1299894 -187979660 - MER4-int LTR ERV1 -5436 1162 1111 522 241 0 0 chr6 1299901 1300046 -187979508 + (CATA)n Simple_repeat Simple_repeat 1 145 0 288 0 0 0 chr6 1301463 1301495 -187978059 + (CA)n Simple_repeat Simple_repeat 2 33 0 204 303 40 0 chr6 1301800 1301876 -187977678 - MIR SINE MIR -118 144 66 3611 148 5 45 chr6 1301877 1302983 -187976571 + L1M2 LINE L1 4729 5799 -501 301 125 0 0 chr6 1303010 1303058 -187976496 - L1M1 LINE L1 -471 5829 5782 226 282 48 8 chr6 1303745 1303869 -187975685 + LTR16C LTR ERVL 363 491 0 910 199 62 93 chr6 1305396 1305783 -187973771 + L1MC5 LINE L1 7198 7572 -389 1466 321 30 38 chr6 1305809 1306704 -187972850 + L1MEc LINE L1 36 923 -5473 2427 103 0 0 chr6 1306704 1307014 -187972540 - AluSg SINE Alu 0 310 1 706 292 86 15 chr6 1307016 1307423 -187972131 + L1MEc LINE L1 1021 1456 -4940 240 232 37 12 chr6 1307428 1307510 -187972044 + (TA)n Simple_repeat Simple_repeat 1 84 0 760 249 29 24 chr6 1307515 1307724 -187971830 + L1ME1 LINE L1 5953 6162 -4 762 268 58 22 chr6 1307754 1308067 -187971487 + L1MC5 LINE L1 7603 7926 -35 431 245 46 33 chr6 1308263 1308414 -187971140 - MLT1J LTR MaLR -2 509 357 207 0 0 0 chr6 1309013 1309036 -187970518 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr6 1310158 1310182 -187969372 + (A)n Simple_repeat Simple_repeat 1 24 0 270 246 62 0 chr6 1310867 1310932 -187968622 + MER94 DNA DNA 1 69 -65 7902 164 29 21 chr6 1311002 1312286 -187967268 + L1PB4 LINE L1 3783 5055 -1101 1845 152 3 20 chr6 1312286 1312582 -187966972 - AluJo SINE Alu -21 291 1 7902 164 29 21 chr6 1312582 1313457 -187966097 + L1PB4 LINE L1 5055 5962 -194 2260 51 0 116 chr6 1313457 1313792 -187965762 - AluY SINE Alu -15 296 1 7902 164 29 21 chr6 1313792 1313988 -187965566 + L1PB4 LINE L1 5962 6155 -1 27 0 0 0 chr6 1313988 1314015 -187965539 + AT_rich Low_complexity Low_complexity 1 27 0 244 289 133 43 chr6 1314479 1314640 -187964914 + L1MC4a LINE L1 5823 5968 -1840 2141 105 67 64 chr6 1314640 1315029 -187964525 + MLT1B LTR MaLR 1 390 0 244 289 133 43 chr6 1315029 1315168 -187964386 + L1MC4a LINE L1 5968 6150 -1658 786 202 0 0 chr6 1315171 1315300 -187964254 + FLAM_A SINE Alu 1 129 -4 1408 221 120 14 chr6 1315372 1315729 -187963825 + MSTD LTR MaLR 2 396 0 222 37 0 0 chr6 1315945 1315972 -187963582 + (CA)n Simple_repeat Simple_repeat 2 28 0 426 85 0 0 chr6 1316167 1316226 -187963328 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 196 217 0 22 chr6 1316681 1316727 -187962827 - MIR SINE MIR -190 72 28 260 224 0 15 chr6 1319048 1319115 -187960439 - L2 LINE L2 -63 3250 3185 23 0 0 0 chr6 1322120 1322143 -187957411 + GC_rich Low_complexity Low_complexity 1 23 0 55 62 0 0 chr6 1322565 1322662 -187956892 + GC_rich Low_complexity Low_complexity 1 97 0 21 57 0 0 chr6 1322889 1322924 -187956630 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 1323001 1323023 -187956531 + GC_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr6 1323677 1323701 -187955853 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr6 1323850 1323877 -187955677 + AT_rich Low_complexity Low_complexity 1 27 0 190 288 0 17 chr6 1327208 1327267 -187952287 - MIR SINE MIR -131 77 20 1080 67 8 0 chr6 1327643 1327777 -187951777 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1327777 1327979 -187951575 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1327983 1328043 -187951511 + AluSp SINE Alu 73 132 -181 1424 119 5 0 chr6 1328045 1328247 -187951307 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328251 1328311 -187951243 + AluSp SINE Alu 73 132 -181 1039 67 7 7 chr6 1328313 1328448 -187951106 + AluSp SINE Alu 1 135 -178 1461 109 5 0 chr6 1328448 1328650 -187950904 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328654 1328714 -187950840 + AluSp SINE Alu 73 132 -181 1434 119 5 0 chr6 1328716 1328918 -187950636 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1328922 1328982 -187950572 + AluSp SINE Alu 73 132 -181 1053 83 0 0 chr6 1328984 1329116 -187950438 + AluSp SINE Alu 1 132 -181 1484 104 5 0 chr6 1329118 1329320 -187950234 + AluSp SINE Alu 1 203 -110 458 67 0 0 chr6 1329324 1329384 -187950170 + AluSp SINE Alu 73 132 -181 1055 83 0 0 chr6 1329386 1329518 -187950036 + AluSp SINE Alu 1 132 -181 2363 87 10 0 chr6 1329520 1329829 -187949725 + AluSp SINE Alu 1 312 -1 1557 163 3 48 chr6 1331593 1331882 -187947672 + AluJo SINE Alu 29 304 -8 498 238 163 13 chr6 1332745 1332988 -187946566 + L1ME1 LINE L1 5887 6159 -7 316 222 14 14 chr6 1334949 1335021 -187944533 - Tigger5 DNA MER2_type -1 2322 2251 * 386 164 0 0 chr6 1334990 1335045 -187944509 - Tigger5 DNA MER2_type -2268 55 1 1025 96 0 0 chr6 1335887 1336023 -187943531 - AluSg/x SINE Alu -1 311 176 299 143 0 0 chr6 1336095 1336144 -187943410 + L1MA8 LINE L1 6116 6164 -127 410 321 139 9 chr6 1336288 1336612 -187942942 - LTR16C LTR ERVL -39 452 87 367 223 57 76 chr6 1336729 1336886 -187942668 + MER63A DNA MER1_type 55 208 -2 1113 227 32 4 chr6 1337059 1337310 -187942244 + MIR SINE MIR 5 262 0 5897 141 20 15 chr6 1337596 1338594 -187940960 - L1MA8 LINE L1 -25 6266 5264 2818 49 0 0 chr6 1338630 1338956 -187940598 - LTR17 LTR ERV1 -454 326 1 4743 50 2 2 chr6 1338957 1339515 -187940039 - HERV17 LTR ERV1 -1 8625 8068 * 5669 62 3 1 chr6 1339506 1340198 -187939356 - HERV17 LTR ERV1 -3304 5322 4630 210 105 0 0 chr6 1340237 1340275 -187939279 + (TA)n Simple_repeat Simple_repeat 1 38 0 2032 135 0 30 chr6 1340751 1341054 -187938500 + AluSq SINE Alu 1 294 -19 2338 105 0 0 chr6 1341428 1341724 -187937830 - AluSg SINE Alu -14 296 1 1125 283 83 38 chr6 1342203 1342758 -187936796 + L1MC4a LINE L1 5298 5877 -1931 340 304 0 36 chr6 1343053 1343165 -187936389 + GA-rich Low_complexity Low_complexity 1 108 0 195 279 16 0 chr6 1344760 1344821 -187934733 - MIR3 SINE MIR -37 171 110 327 364 114 13 chr6 1345406 1345634 -187933920 + L3 LINE CR1 342 592 -985 687 237 46 98 chr6 1345686 1345958 -187933596 + L2 LINE L2 3006 3260 -53 2321 107 3 0 chr6 1345958 1346266 -187933288 + AluSx SINE Alu 1 309 -3 687 237 46 98 chr6 1346266 1346318 -187933236 + L2 LINE L2 3260 3313 0 741 296 35 43 chr6 1346332 1346677 -187932877 + L3 LINE CR1 682 1023 -554 342 251 97 58 chr6 1346724 1346871 -187932683 + L1MC4a LINE L1 5665 5824 -1984 1802 161 10 20 chr6 1346871 1347175 -187932379 + AluJb SINE Alu 1 301 -11 342 251 97 58 chr6 1347175 1347234 -187932320 + L1MC4a LINE L1 5824 5879 -1929 244 314 35 0 chr6 1347306 1347392 -187932162 + MER5A DNA MER1_type 18 106 -83 637 164 49 16 chr6 1347456 1347578 -187931976 - L1MB4 LINE L1 -3 6177 6052 227 357 143 9 chr6 1347679 1347791 -187931763 - L2 LINE L2 0 3272 3146 228 200 0 0 chr6 1347854 1347894 -187931660 + L1MB3 LINE L1 5551 5590 -722 2197 176 51 7 chr6 1347994 1348408 -187931146 + L1MA9 LINE L1 5832 6263 -49 1198 186 19 27 chr6 1349950 1350208 -187929346 + L1MCa LINE L1 6 261 -6165 * 4039 183 65 26 chr6 1350202 1351242 -187928312 + L1MCa LINE L1 775 1773 -4653 1495 185 26 15 chr6 1351242 1351512 -187928042 - AluJb SINE Alu -37 275 3 4039 183 65 26 chr6 1351512 1352627 -187926927 + L1MCa LINE L1 1773 3110 -3316 3378 225 5 16 chr6 1352614 1353409 -187926145 + L1MCa LINE L1 4145 4930 -1496 * 2476 138 14 32 chr6 1353469 1353862 -187925692 + L1MB3 LINE L1 5748 6134 -49 1584 186 0 38 chr6 1353862 1354180 -187925374 + AluJo SINE Alu 1 306 -6 2476 138 14 32 chr6 1354180 1354227 -187925327 + L1MB3 LINE L1 6134 6180 -3 426 20 0 0 chr6 1354799 1354850 -187924704 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 202 284 75 0 chr6 1354885 1354952 -187924602 - MIR SINE MIR -104 158 87 2173 108 0 3 chr6 1355922 1356209 -187923345 + AluSg SINE Alu 1 286 -24 288 0 0 0 chr6 1356458 1356490 -187923064 + (CA)n Simple_repeat Simple_repeat 1 32 0 6308 242 28 29 chr6 1358162 1360432 -187919122 + L1M4 LINE L1 16 2424 -4401 2598 97 8 0 chr6 1360432 1360784 -187918770 - THE1A LTR MaLR 0 355 1 4430 87 3 7 chr6 1360784 1361356 -187918198 - THE1A-int LTR MaLR 0 1580 1011 931 229 22 11 chr6 1361356 1361631 -187917923 + L1M4 LINE L1 3542 3819 -2825 8004 217 14 6 chr6 1361667 1363846 -187915708 + L1MB7 LINE L1 2108 4324 -2320 1292 154 14 10 chr6 1363836 1364137 -187915417 + L1MB7 LINE L1 4222 4432 -2212 * 257 174 0 0 chr6 1364144 1364190 -187915364 + GA-rich Low_complexity Low_complexity 3 48 0 454 126 0 23 chr6 1364310 1364397 -187915157 + (GGAA)n Simple_repeat Simple_repeat 2 86 0 1073 116 6 0 chr6 1364421 1364594 -187914960 + (GGGAA)n Simple_repeat Simple_repeat 1 174 0 4057 168 55 42 chr6 1364594 1365183 -187914371 + L1MB7 LINE L1 5699 6279 -403 2330 85 0 26 chr6 1365183 1365489 -187914065 + AluSx SINE Alu 1 298 -14 2033 120 53 0 chr6 1365499 1365783 -187913771 + AluSx SINE Alu 1 299 -13 4057 168 55 42 chr6 1365783 1366020 -187913534 + L1MB7 LINE L1 6287 6547 -135 2416 99 0 0 chr6 1366020 1366332 -187913222 + AluSp SINE Alu 1 312 -1 4057 168 55 42 chr6 1366332 1366383 -187913171 + L1MB7 LINE L1 6547 6596 -86 1419 164 50 23 chr6 1366383 1366645 -187912909 + Tigger2a DNA MER2_type 1 269 -165 482 201 54 0 chr6 1366648 1367462 -187912092 + (TA)n Simple_repeat Simple_repeat 1 857 0 324 135 0 0 chr6 1367489 1367541 -187912013 + L1MB8 LINE L1 6115 6166 -12 476 313 84 39 chr6 1367544 1367982 -187911572 - L1MC/D LINE L1 -2096 5712 5255 194 287 43 21 chr6 1368154 1368248 -187911306 + L2 LINE L2 1397 1492 -1822 10009 203 68 46 chr6 1368511 1368578 -187910976 - Charlie1 DNA MER1_type 0 2761 2697 1961 113 76 0 chr6 1368578 1368853 -187910701 + AluSx SINE Alu 3 298 -14 10009 203 68 46 chr6 1368853 1369562 -187909992 - Charlie1 DNA MER1_type -64 2697 2005 1251 212 59 14 chr6 1369562 1369850 -187909704 - AluJo SINE Alu -1 301 1 10009 203 68 46 chr6 1369850 1370519 -187909035 - Charlie1 DNA MER1_type -756 2005 1352 3784 60 2 2 chr6 1370519 1370989 -187908565 + L1PA5 LINE L1 5685 6154 0 10009 203 68 46 chr6 1370989 1371002 -187908552 - Charlie1 DNA MER1_type -1409 1352 1341 703 211 16 0 chr6 1371002 1371130 -187908424 + AluJo SINE Alu 1 130 -172 10009 203 68 46 chr6 1371130 1372364 -187907190 - Charlie1 DNA MER1_type -1420 1341 6 2029 168 13 3 chr6 1373283 1373669 -187905885 - MLT1B LTR MaLR 0 390 1 284 308 0 19 chr6 1373720 1373824 -187905730 + L2 LINE L2 3170 3271 -1 22 0 0 0 chr6 1374613 1374635 -187904919 + AT_rich Low_complexity Low_complexity 1 22 0 1620 192 7 16 chr6 1375614 1375921 -187903633 + AluJo SINE Alu 7 310 -2 1781 176 20 3 chr6 1376497 1376803 -187902751 - AluJb SINE Alu -1 311 1 268 242 0 0 chr6 1378336 1378398 -187901156 + L2 LINE L2 3250 3311 -2 2154 116 51 25 chr6 1378446 1378801 -187900753 - THE1B LTR MaLR 0 364 1 707 247 0 6 chr6 1378832 1378990 -187900564 + AluJo SINE Alu 136 292 -20 268 288 76 47 chr6 1379155 1379391 -187900163 + L1ME LINE L1 3931 4173 -1973 525 221 39 0 chr6 1379445 1379572 -187899982 + MER103 DNA DNA 35 166 0 309 356 46 16 chr6 1379713 1379907 -187899647 + MIR SINE MIR 14 213 -49 449 282 231 4 chr6 1379922 1380195 -187899359 + L1ME LINE L1 5412 5746 -375 371 236 57 57 chr6 1380482 1380622 -187898932 - L1M4 LINE L1 -2892 3254 3115 601 336 58 20 chr6 1380637 1381121 -187898433 + LTR67 LTR ERVL 22 557 0 415 291 67 62 chr6 1381124 1381560 -187897994 - L1M4 LINE L1 -3034 3112 2675 354 331 18 6 chr6 1381570 1381733 -187897821 + MER5A DNA MER1_type 1 165 -24 243 368 82 28 chr6 1381775 1381957 -187897597 - L3b LINE CR1 -61 1522 1331 611 291 34 6 chr6 1382383 1382562 -187896992 + MLT1L LTR MaLR 431 614 -1 215 346 79 0 chr6 1382652 1382779 -187896775 - L3b LINE CR1 -343 1240 1104 760 265 103 44 chr6 1383187 1383594 -187895960 + L2 LINE L2 2883 3313 0 292 351 70 52 chr6 1383742 1384087 -187895467 - MLT1K LTR MaLR -231 357 7 26 104 0 0 chr6 1384361 1384457 -187895097 + AT_rich Low_complexity Low_complexity 1 96 0 408 191 114 15 chr6 1384550 1384681 -187894873 + ORSL DNA AcHobo 1 144 -131 2236 71 7 0 chr6 1385923 1386240 -187893314 - AluSg SINE Alu 0 320 2 24 32 0 0 chr6 1387032 1387063 -187892491 + GC_rich Low_complexity Low_complexity 1 31 0 707 268 38 0 chr6 1387835 1388018 -187891536 - MIR SINE MIR -8 254 65 309 286 62 34 chr6 1389803 1389981 -187889573 + L1MC5 LINE L1 7749 7931 -30 23 33 0 0 chr6 1390659 1390689 -187888865 + GC_rich Low_complexity Low_complexity 1 30 0 319 259 0 0 chr6 1390758 1390843 -187888711 + G-rich Low_complexity Low_complexity 3 87 0 357 280 77 28 chr6 1394990 1395133 -187884421 + MIR SINE MIR 5 154 -108 315 0 0 0 chr6 1396056 1396091 -187883463 + (CA)n Simple_repeat Simple_repeat 1 35 0 239 173 19 0 chr6 1397419 1397471 -187882083 + CT-rich Low_complexity Low_complexity 2 54 0 189 0 0 0 chr6 1398668 1398689 -187880865 + (CCA)n Simple_repeat Simple_repeat 3 23 0 29 60 0 0 chr6 1398742 1398792 -187880762 + GC_rich Low_complexity Low_complexity 1 50 0 387 0 0 0 chr6 1400360 1400403 -187879151 + (CA)n Simple_repeat Simple_repeat 1 43 0 1532 134 5 0 chr6 1405264 1405488 -187874066 - AluJo SINE Alu 0 312 88 805 197 26 57 chr6 1406295 1406488 -187873066 - MER5A DNA MER1_type 0 189 3 444 227 20 0 chr6 1407005 1407155 -187872399 + GA-rich Low_complexity Low_complexity 2 154 0 347 222 8 0 chr6 1407188 1407305 -187872249 + GA-rich Low_complexity Low_complexity 2 119 0 223 226 0 36 chr6 1407336 1407420 -187872134 + GA-rich Low_complexity Low_complexity 3 83 0 23 0 0 0 chr6 1407896 1407919 -187871635 + AT_rich Low_complexity Low_complexity 1 23 0 1955 213 12 5 chr6 1408840 1409268 -187870286 + L1MA7 LINE L1 5371 5801 -490 423 200 27 0 chr6 1409271 1409346 -187870208 - Charlie3 DNA MER1_type -8 2702 2626 2083 177 58 33 chr6 1409357 1409842 -187869712 + L1MA7 LINE L1 5795 6291 0 768 179 0 0 chr6 1410593 1410908 -187868646 + (CA)n Simple_repeat Simple_repeat 1 315 0 713 171 0 11 chr6 1410955 1411136 -187868418 + (CA)n Simple_repeat Simple_repeat 2 180 0 588 218 0 0 chr6 1411178 1411538 -187868016 + (CA)n Simple_repeat Simple_repeat 1 360 0 263 321 0 21 chr6 1411545 1411685 -187867869 + (CATA)n Simple_repeat Simple_repeat 2 138 0 496 212 6 6 chr6 1411689 1411868 -187867686 + (CA)n Simple_repeat Simple_repeat 1 179 0 1749 171 74 15 chr6 1412715 1413093 -187866461 - MLT1B LTR MaLR -8 382 1 2300 108 0 0 chr6 1413927 1414222 -187865332 + AluSx SINE Alu 1 295 -17 2272 74 7 17 chr6 1416447 1416746 -187862808 + AluY SINE Alu 1 296 -15 2370 64 4 0 chr6 1418572 1418892 -187860662 + AluY SINE Alu 1 321 0 784 176 56 42 chr6 1419127 1419343 -187860211 + MER20 DNA MER1_type 1 219 0 1855 148 0 48 chr6 1419402 1419713 -187859841 + AluJb SINE Alu 1 296 -16 21 0 0 0 chr6 1419713 1419734 -187859820 + AT_rich Low_complexity Low_complexity 1 21 0 1987 151 3 7 chr6 1419745 1420043 -187859511 + AluJo SINE Alu 1 297 -15 480 264 85 0 chr6 1421089 1421218 -187858336 - Charlie8 DNA MER1_type -2273 144 5 298 333 67 9 chr6 1423298 1423403 -187856151 + MIR3 SINE MIR 95 205 -3 538 287 96 57 chr6 1423707 1423916 -187855638 - MIR SINE MIR -31 231 15 800 137 8 15 chr6 1424571 1424702 -187854852 + AluSq/x SINE Alu 2 131 -181 266 275 22 11 chr6 1424904 1424995 -187854559 - MIR SINE MIR -122 140 49 225 0 0 0 chr6 1425718 1425743 -187853811 + (TG)n Simple_repeat Simple_repeat 2 26 0 387 137 4 39 chr6 1425744 1425830 -187853724 - FLAM_A SINE Alu -1 132 54 2050 126 3 0 chr6 1425871 1426181 -187853373 - AluSx SINE Alu -1 311 1 717 135 23 23 chr6 1426190 1426323 -187853231 - FLAM_C SINE Alu 0 133 1 651 284 12 0 chr6 1426850 1427019 -187852535 - MER58A DNA MER1_type -9 215 45 196 200 0 100 chr6 1427217 1427267 -187852287 - MIR SINE MIR -2 260 216 695 194 58 13 chr6 1427297 1427452 -187852102 + FRAM SINE Alu 1 161 -15 363 269 112 30 chr6 1427508 1427642 -187851912 - MIR SINE MIR -96 166 22 285 315 112 12 chr6 1427663 1427833 -187851721 + MIR SINE MIR 43 228 -34 1730 144 33 23 chr6 1427900 1428205 -187851349 + MER44D DNA MER2_type 32 609 0 4251 181 81 12 chr6 1428221 1429886 -187849668 - L1MB8 LINE L1 -54 6124 4346 23 0 0 0 chr6 1429886 1429909 -187849645 + AT_rich Low_complexity Low_complexity 1 23 0 436 256 75 67 chr6 1429915 1430169 -187849385 - L1M4 LINE L1 -1616 4530 4275 21 36 0 0 chr6 1430218 1430246 -187849308 + AT_rich Low_complexity Low_complexity 1 28 0 200 231 0 58 chr6 1430342 1430394 -187849160 - L2 LINE L2 0 3313 3265 * 282 234 0 0 chr6 1430371 1430439 -187849115 + MIR SINE MIR 24 91 -117 619 256 106 0 chr6 1430444 1430624 -187848930 + MIR SINE MIR 64 262 0 220 271 158 55 chr6 1430636 1431034 -187848520 - L2 LINE L2 -56 3257 2819 1460 167 23 20 chr6 1431155 1431455 -187848099 - L1MA5 LINE L1 -19 6281 5981 271 297 156 21 chr6 1431529 1431909 -187847645 - MLT1H1 LTR MaLR -4 551 103 812 256 56 16 chr6 1432533 1432783 -187846771 + MIR SINE MIR 2 261 -1 1308 120 69 0 chr6 1432783 1432999 -187846555 + Tigger4(Zombi) DNA MER2_type 1 231 -2500 1886 89 44 173 chr6 1433001 1433207 -187846347 + Tigger4(Zombi) DNA MER2_type 2333 2457 -274 1947 142 0 0 chr6 1433207 1433518 -187846036 - AluSx SINE Alu -1 311 1 1886 89 44 173 chr6 1433518 1433740 -187845814 + Tigger4(Zombi) DNA MER2_type 2457 2706 -25 2095 110 3 3 chr6 1435345 1435646 -187843908 - AluSq SINE Alu -12 301 1 1722 159 3 16 chr6 1435663 1435978 -187843576 + AluJb SINE Alu 1 311 -1 936 181 0 0 chr6 1436361 1436538 -187843016 - AluJ SINE Alu -16 296 120 45480 32 3 1 chr6 1436540 1442676 -187836878 - L1PA3 LINE L1 -8 6147 1 731 187 0 15 chr6 1442682 1442816 -187836738 - AluJ SINE Alu -170 132 1 245 296 51 0 chr6 1442956 1443054 -187836500 + MIR SINE MIR 105 207 -55 2913 199 65 21 chr6 1443341 1443429 -187836125 + L1MB3 LINE L1 5495 5578 -605 2099 112 3 0 chr6 1443429 1443723 -187835831 + AluSx SINE Alu 1 295 -17 2913 199 65 21 chr6 1443723 1444292 -187835262 + L1MB3 LINE L1 5578 6181 -2 859 129 0 30 chr6 1445221 1445353 -187834201 - AluJ SINE Alu -174 128 1 220 53 53 0 chr6 1446016 1446054 -187833500 + C-rich Low_complexity Low_complexity 39 78 0 442 268 263 16 chr6 1446056 1446634 -187832920 + L2 LINE L2 1928 2648 -666 187 254 0 16 chr6 1447030 1447093 -187832461 + L2 LINE L2 3198 3259 -54 1782 243 27 78 chr6 1447127 1447277 -187832277 + L1ME1 LINE L1 5240 5396 -770 382 157 36 0 chr6 1447277 1447360 -187832194 + L1MB3 LINE L1 6096 6181 -2 1782 243 27 78 chr6 1447360 1447806 -187831748 + L1ME1 LINE L1 5396 5797 -369 1766 144 53 0 chr6 1447806 1448090 -187831464 + AluSx SINE Alu 1 299 -13 1782 243 27 78 chr6 1448090 1448328 -187831226 + L1ME1 LINE L1 5797 6046 -120 602 258 5 75 chr6 1448494 1448610 -187830944 + MER45A DNA AcHobo 1 102 -1479 2103 96 0 0 chr6 1448610 1448925 -187830629 - AluSg SINE Alu 0 315 1 602 258 5 75 chr6 1448925 1448993 -187830561 + MER45A DNA AcHobo 102 173 -5 688 253 135 47 chr6 1449509 1449806 -187829748 + MER2 DNA MER2_type 2 324 -21 733 131 57 0 chr6 1449875 1449997 -187829557 + LOR1a LTR ERV1 1 129 -368 * 1561 139 80 24 chr6 1449995 1450064 -187829490 + LOR1b LTR ERV1 158 222 -239 2199 131 56 8 chr6 1450064 1450422 -187829132 - THE1C LTR MaLR 0 375 1 1561 139 80 24 chr6 1450422 1450640 -187828914 + LOR1b LTR ERV1 222 461 0 257 213 227 0 chr6 1450677 1450752 -187828802 - MER5A DNA MER1_type -89 100 9 225 296 45 45 chr6 1450813 1450901 -187828653 + MIR SINE MIR 44 131 -131 430 248 67 0 chr6 1451001 1451106 -187828448 - MIR SINE MIR -98 164 53 1690 145 0 4 chr6 1451118 1451387 -187828167 - AluJb SINE Alu -13 299 32 388 222 118 30 chr6 1451601 1451736 -187827818 - HAL1b LINE L1 -1 1347 1201 21 36 0 0 chr6 1451898 1451926 -187827628 + AT_rich Low_complexity Low_complexity 1 28 0 398 324 67 57 chr6 1451951 1452250 -187827304 - L1ME LINE L1 -547 5574 5273 1868 104 26 0 chr6 1452301 1452570 -187826984 + AluSx SINE Alu 30 305 -7 255 318 15 8 chr6 1452654 1452786 -187826768 - L1ME LINE L1 -1071 5075 4943 917 251 77 40 chr6 1452877 1453256 -187826298 - L1ME1 LINE L1 -15 6151 5759 1820 193 110 68 chr6 1453256 1453800 -187825754 + LTR60 LTR ERV1 1 567 -19 979 267 69 57 chr6 1453847 1454323 -187825231 - L1ME1 LINE L1 -419 5765 5284 368 311 45 42 chr6 1454351 1454708 -187824846 - L1ME LINE L1 -1299 4847 4490 3874 107 17 72 chr6 1455071 1455174 -187824380 - L1PB3 LINE L1 -23 6131 6024 1840 158 0 3 chr6 1455174 1455477 -187824077 - AluJb SINE Alu -10 302 1 3874 107 17 72 chr6 1455477 1455579 -187823975 - L1PB3 LINE L1 -130 6024 5624 651 260 60 91 chr6 1455579 1455765 -187823789 - L1MC2 LINE L1 -391 5953 5763 2591 39 0 0 chr6 1455765 1456076 -187823478 - AluY SINE Alu 0 311 1 651 260 60 91 chr6 1456076 1456405 -187823149 - L1MC2 LINE L1 -581 5763 5454 496 237 132 7 chr6 1456850 1457002 -187822552 - MLT1J LTR MaLR -15 496 326 554 253 33 20 chr6 1457066 1457216 -187822338 - MLT1J LTR MaLR -352 159 8 496 248 97 7 chr6 1457472 1457617 -187821937 - MLT1I LTR MaLR -210 199 42 1445 204 32 3 chr6 1458233 1458542 -187821012 - LTR23 LTR ERV1 -3 434 117 1373 156 124 0 chr6 1458545 1458802 -187820752 + AluJb SINE Alu 12 300 -12 468 153 135 0 chr6 1458807 1458918 -187820636 - LTR23 LTR ERV1 -311 126 1 425 335 25 37 chr6 1459086 1459331 -187820223 - MLT1J1 LTR MaLR -13 433 192 1591 188 114 112 chr6 1459341 1459971 -187819583 - LTR8A LTR ERV1 -3 724 94 2770 131 66 31 chr6 1459971 1460507 -187819047 - LTR35 LTR ERV1 0 618 1 377 211 79 0 chr6 1460507 1460583 -187818971 - LTR8 LTR ERV1 -609 82 1 1247 143 52 13 chr6 1460604 1460834 -187818720 - MLT1B LTR MaLR -12 378 140 2921 188 20 5 chr6 1460836 1461422 -187818132 + LTR49 LTR ERV1 1 595 0 4288 148 60 65 chr6 1461424 1462670 -187816884 + LTR49-int LTR ERV1 1 1470 -4476 707 143 21 43 chr6 1462672 1462812 -187816742 + FLAM_C SINE Alu 2 138 -5 2145 97 0 3 chr6 1462844 1463133 -187816421 - AluSx SINE Alu -24 288 1 282 306 14 0 chr6 1463212 1463284 -187816270 + tRNA-Glu-GAG tRNA tRNA 3 75 0 3870 199 31 44 chr6 1463284 1464166 -187815388 + MER57B-int LTR ERV1 1563 2432 -3899 1472 110 18 9 chr6 1464175 1464394 -187815160 - pTR5 LTR ERV1 -2046 392 172 317 169 73 83 chr6 1464399 1464495 -187815059 - LTR30 LTR ERV1 -77 702 544 4913 121 28 24 chr6 1464500 1465458 -187814096 - pTR5 LTR ERV1 -418 2020 743 1086 156 142 14 chr6 1465455 1465667 -187813887 + MER57B-int LTR ERV1 2436 2674 -3657 * 767 206 0 0 chr6 1465680 1465806 -187813748 + AluJ SINE Alu 2 127 -185 310 208 54 92 chr6 1465820 1465950 -187813604 + L1MCa LINE L1 1941 2065 -4361 302 124 72 10 chr6 1465950 1466047 -187813507 + (TA)n Simple_repeat Simple_repeat 1 103 0 872 187 24 0 chr6 1466051 1466217 -187813337 + AluJ SINE Alu 131 300 -12 6017 157 28 84 chr6 1466218 1467654 -187811900 + MER57B-int LTR ERV1 2666 4020 -2311 1962 117 36 23 chr6 1467654 1467961 -187811593 - L1PA15 LINE L1 -1 6164 5854 6017 157 28 84 chr6 1467961 1467996 -187811558 + MER57B-int LTR ERV1 4020 4055 -2276 13056 120 28 18 chr6 1468003 1468871 -187810683 + MER57B-int LTR ERV1 4210 5068 -1263 2067 121 3 0 chr6 1468871 1469169 -187810385 - AluSx SINE Alu -13 299 1 13056 120 28 18 chr6 1469169 1469648 -187809906 + MER57B-int LTR ERV1 5068 5541 -790 2870 138 5 5 chr6 1469648 1470082 -187809472 + MER57B LTR ERV1 1 434 0 13056 120 28 18 chr6 1470082 1470671 -187808883 + MER57B-int LTR ERV1 5541 6172 -159 2156 111 0 3 chr6 1470671 1470969 -187808585 + AluSq SINE Alu 1 297 -16 13056 120 28 18 chr6 1470969 1471131 -187808423 + MER57B-int LTR ERV1 6172 6331 0 2435 140 44 2 chr6 1471131 1471539 -187808015 + LTR49 LTR ERV1 1 425 -170 1005 123 0 0 chr6 1471543 1471689 -187807865 + AluSg/x SINE Alu 162 307 -5 700 174 112 12 chr6 1471689 1471850 -187807704 + LTR49 LTR ERV1 419 595 0 775 153 0 60 chr6 1471850 1472000 -187807554 - MLT1B LTR MaLR -249 141 1 2326 61 7 0 chr6 1472440 1472735 -187806819 + AluY SINE Alu 1 297 -14 2262 157 130 46 chr6 1473321 1473602 -187805952 - LTR49 LTR ERV1 0 595 339 1648 146 66 10 chr6 1473602 1473890 -187805664 + AluSx SINE Alu 1 304 -8 2262 157 130 46 chr6 1473890 1474155 -187805399 - LTR49 LTR ERV1 -256 339 3 4559 128 51 69 chr6 1474367 1474724 -187804830 - MER4D LTR ERV1 0 903 541 1945 139 0 0 chr6 1474724 1475019 -187804535 + AluJb SINE Alu 1 295 -17 4559 128 51 69 chr6 1475019 1475258 -187804296 - MER4D LTR ERV1 -362 541 299 2230 104 0 0 chr6 1475258 1475555 -187803999 - AluSq SINE Alu -16 297 1 4559 128 51 69 chr6 1475555 1475876 -187803678 - MER4D LTR ERV1 -604 299 1 1708 185 21 108 chr6 1475986 1476528 -187803026 - MER4A LTR ERV1 -3 695 161 2225 89 0 0 chr6 1476528 1476820 -187802734 - AluSq SINE Alu -12 301 10 1708 185 21 108 chr6 1476820 1476969 -187802585 - MER4A LTR ERV1 -537 161 1 296 288 27 51 chr6 1477228 1477452 -187802102 - L1MC4a LINE L1 -349 5825 5689 384 309 88 34 chr6 1478871 1478989 -187800565 - MIR SINE MIR 0 262 127 1949 217 65 26 chr6 1478989 1479524 -187800030 + LTR38 LTR ERV1 1 556 0 384 309 88 34 chr6 1479524 1479609 -187799945 - MIR SINE MIR -135 127 48 1050 153 5 16 chr6 1480402 1480592 -187798962 + L1MB3 LINE L1 5976 6163 -20 877 108 38 25 chr6 1480601 1481103 -187798451 + (TAGA)n Simple_repeat Simple_repeat 1 508 0 3212 147 31 7 chr6 1481627 1482212 -187797342 - L1MB3 LINE L1 0 6183 5585 3442 193 70 91 chr6 1482684 1483401 -187796153 + L1MD2 LINE L1 5336 6067 -292 4453 55 2 4 chr6 1483401 1483949 -187795605 + L1PA8 LINE L1 5622 6168 -4 198 0 0 0 chr6 1483952 1483974 -187795580 + (CA)n Simple_repeat Simple_repeat 1 22 0 3442 193 70 91 chr6 1483974 1484288 -187795266 + L1MD2 LINE L1 6069 6349 -10 226 271 34 0 chr6 1484612 1484671 -187794883 + (CATG)n Simple_repeat Simple_repeat 2 62 0 266 317 110 24 chr6 1535103 1535267 -187744287 - MLT1I LTR MaLR 0 409 232 2722 112 60 0 chr6 1535556 1535958 -187743596 - MSTA LTR MaLR -2 426 1 497 276 35 0 chr6 1536046 1536216 -187743338 + MIR SINE MIR 87 262 0 32 26 0 0 chr6 1536560 1536599 -187742955 + AT_rich Low_complexity Low_complexity 1 39 0 1505 156 30 50 chr6 1536599 1536763 -187742791 - AluJo SINE Alu -16 296 139 1819 87 9 0 chr6 1536763 1536993 -187742561 - AluSp SINE Alu -11 302 71 1505 156 30 50 chr6 1536993 1537130 -187742424 - AluJo SINE Alu -173 139 1 242 257 29 0 chr6 1537681 1537751 -187741803 + LTR67 LTR ERVL 431 502 -55 595 268 168 9 chr6 1537883 1538282 -187741272 + Charlie2 DNA MER1_type 74 589 -2273 955 224 53 86 chr6 1538325 1538525 -187741029 + Charlie2 DNA MER1_type 2030 2235 -627 1617 165 49 8 chr6 1538525 1538792 -187740762 + AluJo SINE Alu 1 278 -34 955 224 53 86 chr6 1538792 1539077 -187740477 + Charlie2 DNA MER1_type 2235 2499 -363 1277 205 52 46 chr6 1539077 1539404 -187740150 + L1MB8 LINE L1 5849 6177 -1 1679 171 3 24 chr6 1539413 1539705 -187739849 + AluJo SINE Alu 1 286 -26 204 40 0 0 chr6 1539714 1539739 -187739815 + (CA)n Simple_repeat Simple_repeat 2 26 0 471 254 30 60 chr6 1539739 1539964 -187739590 + Charlie2 DNA MER1_type 2502 2721 -141 1592 271 135 6 chr6 1539965 1540460 -187739094 + MER69 DNA AcHobo 1 559 -667 233 242 152 38 chr6 1540430 1540562 -187738992 + MER69 DNA AcHobo 2254 2400 -126 * 363 134 20 174 chr6 1540554 1540620 -187738934 + Charlie2 DNA MER1_type 2736 2768 -94 1743 114 0 0 chr6 1540620 1540848 -187738706 + AluSc SINE Alu 65 292 -17 363 134 20 174 chr6 1540848 1540930 -187738624 + Charlie2 DNA MER1_type 2768 2861 -1 1779 281 90 52 chr6 1541042 1541368 -187738186 + HERVL LTR ERVL 2050 2362 -3402 2408 93 3 0 chr6 1541368 1541678 -187737876 + AluY SINE Alu 1 311 0 1779 281 90 52 chr6 1541678 1542176 -187737378 + HERVL LTR ERVL 2362 2905 -2859 360 43 0 0 chr6 1542288 1542334 -187737220 + (TG)n Simple_repeat Simple_repeat 1 46 0 1525 149 29 58 chr6 1542396 1542705 -187736849 + AluJo SINE Alu 1 300 -12 266 230 103 58 chr6 1542706 1542793 -187736761 + HERVL LTR ERVL 3139 3229 -2535 386 328 54 17 chr6 1542907 1543153 -187736401 + HERVL LTR ERVL 5111 5369 -221 439 313 20 7 chr6 1544005 1544155 -187735399 + LTR67 LTR ERVL 385 536 -21 207 172 0 69 chr6 1544559 1544617 -187734937 + CT-rich Low_complexity Low_complexity 3 56 0 2366 79 3 7 chr6 1545254 1545558 -187733996 + AluSp SINE Alu 1 303 -10 339 44 0 0 chr6 1546666 1546711 -187732843 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 802 166 14 21 chr6 1546711 1546856 -187732698 - FRAM SINE Alu -32 144 1 242 299 39 26 chr6 1546898 1547052 -187732502 - MIR SINE MIR -19 243 88 2292 97 10 0 chr6 1547329 1547628 -187731926 + AluSx SINE Alu 1 302 -10 30 27 0 0 chr6 1547628 1547665 -187731889 + AT_rich Low_complexity Low_complexity 1 37 0 204 40 0 0 chr6 1547905 1547930 -187731624 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 1968 151 143 5 chr6 1548069 1548441 -187731113 + MSTA LTR MaLR 6 428 0 21 36 0 0 chr6 1548460 1548488 -187731066 + AT_rich Low_complexity Low_complexity 1 28 0 1987 151 0 0 chr6 1548488 1548773 -187730781 - AluSx SINE Alu -27 285 1 1527 229 65 26 chr6 1548776 1549343 -187730211 - L1MC5 LINE L1 -58 7903 7315 273 302 128 29 chr6 1549501 1549673 -187729881 + MIR SINE MIR 20 208 -54 789 204 56 45 chr6 1549696 1550086 -187729468 - MSTD LTR MaLR -52 344 1 876 185 49 19 chr6 1550715 1550920 -187728634 + MIR SINE MIR 24 234 -28 189 325 112 48 chr6 1551145 1551351 -187728203 + L2 LINE L2 2945 3163 -109 411 301 30 63 chr6 1551665 1551967 -187727587 - L1ME3A LINE L1 -232 5938 5647 247 211 35 0 chr6 1551991 1552048 -187727506 + L2 LINE L2 3214 3272 0 276 269 86 107 chr6 1552701 1552898 -187726656 - MLT1L LTR MaLR -415 200 8 2503 69 3 28 chr6 1553824 1554143 -187725411 + AluY SINE Alu 1 311 0 1025 252 79 84 chr6 1554224 1555018 -187724536 + L1MEc LINE L1 827 1617 -4779 1716 162 32 19 chr6 1555018 1555326 -187724228 + AluJo SINE Alu 1 312 0 1025 252 79 84 chr6 1555326 1555502 -187724052 + L1MEc LINE L1 1617 1792 -4604 1420 208 46 8 chr6 1555563 1555914 -187723640 - L1M4 LINE L1 -1394 5563 5200 870 92 108 0 chr6 1555938 1556058 -187723496 + AluSq/x SINE Alu 1 133 -179 2289 113 3 0 chr6 1556083 1556385 -187723169 + AluSp SINE Alu 1 303 -10 6060 114 28 3 chr6 1556392 1556605 -187722949 - L1M1 LINE L1 -4099 3466 3260 1886 164 13 13 chr6 1556605 1556909 -187722645 - AluJb SINE Alu -6 306 3 6060 114 28 3 chr6 1556909 1557653 -187721901 - L1M1 LINE L1 -4305 3260 2485 5570 239 38 32 chr6 1557658 1559191 -187720363 - L1M4 LINE L1 -2451 4506 3018 810 50 0 0 chr6 1559191 1559292 -187720262 + L1PA5 LINE L1 6053 6153 -1 5570 239 38 32 chr6 1559292 1559838 -187719716 - L1M4 LINE L1 -3939 3018 2476 7649 223 52 20 chr6 1560018 1562303 -187717251 - L1M4 LINE L1 -4550 2409 9 781 239 117 4 chr6 1562459 1562828 -187716726 + MLT1G LTR MaLR 144 589 -1 819 218 88 10 chr6 1563460 1563653 -187715901 - Charlie8 DNA MER1_type -2209 208 1 212 292 0 0 chr6 1568924 1568996 -187710558 + L3 LINE CR1 1080 1151 -426 236 309 95 16 chr6 1571276 1571528 -187708026 + L1ME LINE L1 5615 5886 -284 2173 124 7 7 chr6 1571545 1571844 -187707710 + AluSq SINE Alu 1 299 -14 534 329 67 53 chr6 1572079 1572228 -187707326 + L1MC4a LINE L1 4410 4556 -1590 2377 93 0 3 chr6 1572228 1572530 -187707024 + AluSx SINE Alu 1 301 -11 534 329 67 53 chr6 1572530 1573147 -187706407 + L1MC4a LINE L1 4556 5186 -960 347 162 20 40 chr6 1573164 1573263 -187706291 + L1MC5 LINE L1 7636 7732 -229 216 214 0 0 chr6 1573279 1573335 -187706219 + (CA)n Simple_repeat Simple_repeat 1 56 0 1423 277 97 11 chr6 1573453 1574118 -187705436 + L1MC4a LINE L1 5175 5398 -748 1854 142 13 13 chr6 1576236 1576545 -187703009 - AluJo SINE Alu -1 311 3 354 211 24 8 chr6 1576752 1577007 -187702547 + (TG)n Simple_repeat Simple_repeat 1 259 0 2062 143 0 6 chr6 1577894 1578208 -187701346 - AluSx SINE Alu 0 312 1 231 264 138 46 chr6 1578210 1578297 -187701257 - L2 LINE L2 -2 3270 3176 213 265 20 0 chr6 1578580 1578629 -187700925 + L2 LINE L2 3240 3289 -24 195 42 0 0 chr6 1578726 1578750 -187700804 + (ATTG)n Simple_repeat Simple_repeat 4 27 0 1331 230 83 49 chr6 1580343 1580611 -187698943 - MER82 DNA MER2_type -203 450 160 1755 167 16 32 chr6 1580611 1580923 -187698631 + AluJo SINE Alu 1 307 -5 1331 230 83 49 chr6 1580923 1581085 -187698469 - MER82 DNA MER2_type -493 160 5 453 19 0 0 chr6 1581907 1581961 -187697593 + (CA)n Simple_repeat Simple_repeat 1 54 0 1809 181 48 0 chr6 1582017 1582348 -187697206 + L1PA16 LINE L1 5802 6148 -18 487 245 10 50 chr6 1582353 1582553 -187697001 + L1MC4 LINE L1 7472 7663 -379 231 114 0 0 chr6 1583418 1583453 -187696101 + (TG)n Simple_repeat Simple_repeat 1 35 0 274 312 54 48 chr6 1585211 1585397 -187694157 + Charlie2 DNA MER1_type 30 216 -2646 457 165 0 0 chr6 1586204 1586283 -187693271 + HY4 scRNA scRNA 5 83 -10 306 0 0 0 chr6 1590081 1590115 -187689439 + (CA)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr6 1590114 1590134 -187689420 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 246 259 0 0 chr6 1590134 1590192 -187689362 + (TA)n Simple_repeat Simple_repeat 2 59 0 190 347 53 0 chr6 1591869 1591944 -187687610 + MIR3 SINE MIR 89 167 -41 203 138 0 0 chr6 1592091 1592120 -187687434 + (CCTG)n Simple_repeat Simple_repeat 1 29 0 206 333 39 0 chr6 1592536 1592614 -187686940 + L2 LINE L2 3233 3313 0 356 274 98 13 chr6 1592625 1592778 -187686776 + MER104 DNA Tc2 8 173 -7 408 314 65 0 chr6 1592803 1592956 -187686598 + MIR SINE MIR 80 242 -20 48 32 0 0 chr6 1599270 1599332 -187680222 + GC_rich Low_complexity Low_complexity 1 62 0 42 20 0 0 chr6 1599575 1599624 -187679930 + GC_rich Low_complexity Low_complexity 1 49 0 252 119 0 75 chr6 1599908 1599986 -187679568 + (CCCGG)n Simple_repeat Simple_repeat 1 72 0 31 0 0 0 chr6 1600113 1600144 -187679410 + GC_rich Low_complexity Low_complexity 1 31 0 34 24 0 0 chr6 1600614 1600655 -187678899 + GC_rich Low_complexity Low_complexity 1 41 0 32 26 0 0 chr6 1600904 1600943 -187678611 + GC_rich Low_complexity Low_complexity 1 39 0 221 120 20 20 chr6 1601158 1601208 -187678346 + (CGG)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr6 1601274 1601299 -187678255 + GC_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr6 1601373 1601397 -187678157 + (CGG)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr6 1601497 1601517 -187678037 + (CGG)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr6 1604126 1604149 -187675405 + GC_rich Low_complexity Low_complexity 1 23 0 220 220 20 0 chr6 1608284 1608334 -187671220 + GA-rich Low_complexity Low_complexity 5 55 0 254 327 13 0 chr6 1611990 1612146 -187667408 + (TG)n Simple_repeat Simple_repeat 1 158 0 261 312 13 0 chr6 1612785 1612862 -187666692 + L2 LINE L2 3236 3313 0 243 0 0 0 chr6 1614418 1614445 -187665109 + (T)n Simple_repeat Simple_repeat 1 27 0 257 232 50 99 chr6 1614791 1614972 -187664582 + MER112 DNA MER1_type 29 200 -60 255 229 0 0 chr6 1615274 1615335 -187664219 + GA-rich Low_complexity Low_complexity 4 64 0 206 152 0 22 chr6 1621225 1621271 -187658283 + CT-rich Low_complexity Low_complexity 2 46 0 811 253 69 30 chr6 1621870 1622174 -187657380 + L1ME2 LINE L1 5839 6154 -10 1861 171 3 10 chr6 1622185 1622483 -187657071 + AluJo SINE Alu 1 296 -16 189 282 175 10 chr6 1622556 1622659 -187656895 + MIR SINE MIR 100 219 -43 292 370 146 0 chr6 1622974 1623336 -187656218 - L2 LINE L2 -48 3265 2851 471 341 41 25 chr6 1624240 1624554 -187655000 - L2 LINE L2 -562 2752 2434 231 333 81 16 chr6 1627436 1627559 -187651995 - MIR SINE MIR -128 134 4 257 333 74 22 chr6 1628932 1629067 -187650487 - L2 LINE L2 -219 3053 2912 218 227 109 126 chr6 1629163 1629195 -187650359 + MIR SINE MIR 22 53 -209 1666 151 37 0 chr6 1629195 1629491 -187650063 + AluJb SINE Alu 1 306 0 218 227 109 126 chr6 1629491 1629576 -187649978 + MIR SINE MIR 53 138 -124 208 252 193 37 chr6 1630269 1630404 -187649150 - L2 LINE L2 -54 3259 3104 310 115 33 0 chr6 1631294 1631355 -187648199 + CT-rich Low_complexity Low_complexity 2 64 0 2216 104 0 25 chr6 1631741 1632058 -187647496 - AluSx SINE Alu -3 309 1 274 237 86 21 chr6 1633094 1633187 -187646367 + L1MA8 LINE L1 5961 6059 -232 * 943 236 46 4 chr6 1633182 1633419 -187646135 + L1MB8 LINE L1 5932 6178 0 314 227 75 37 chr6 1634411 1634520 -187645034 - MIR SINE MIR -55 153 45 2316 79 0 13 chr6 1634520 1634823 -187644731 - AluSg SINE Alu -11 299 1 314 227 75 37 chr6 1634823 1634836 -187644718 - MIR SINE MIR -163 45 34 257 277 15 0 chr6 1635551 1635616 -187643938 + L2 LINE L2 3241 3306 -7 1388 167 151 12 chr6 1636022 1636273 -187643281 - AluJo SINE Alu -16 286 1 2377 76 0 3 chr6 1689852 1690141 -187589413 - AluY SINE Alu -23 288 1 948 164 12 6 chr6 1692931 1693096 -187586458 + MLT1D LTR MaLR 340 505 0 25 31 0 0 chr6 1693474 1693506 -187586048 + AT_rich Low_complexity Low_complexity 1 32 0 230 54 0 27 chr6 1694585 1694622 -187584932 + (TA)n Simple_repeat Simple_repeat 2 37 0 2230 98 0 7 chr6 1697886 1698067 -187581487 - AluY SINE Alu -8 303 123 180 0 0 0 chr6 1698067 1698087 -187581467 + (TAG)n Simple_repeat Simple_repeat 1 20 0 2230 98 0 7 chr6 1698087 1698210 -187581344 - AluY SINE Alu -188 123 1 413 291 0 10 chr6 1698232 1698335 -187581219 + L2 LINE L2 3156 3257 -15 771 243 37 28 chr6 1698340 1698554 -187581000 - MIR SINE MIR -9 253 38 2126 58 0 12 chr6 1699153 1699410 -187580144 - AluY SINE Alu -15 296 43 2285 84 7 7 chr6 1701259 1701555 -187577999 - AluSp SINE Alu -17 296 1 217 359 0 16 chr6 1701572 1701636 -187577918 - L2 LINE L2 -92 3180 3118 212 119 34 68 chr6 1702666 1702725 -187576829 + (TTAA)n Simple_repeat Simple_repeat 1 57 0 24 0 0 0 chr6 1704045 1704069 -187575485 + AT_rich Low_complexity Low_complexity 1 24 0 498 279 0 0 chr6 1704562 1704673 -187574881 - MER58C DNA MER1_type -2 213 103 201 245 0 20 chr6 1704673 1704722 -187574832 + CT-rich Low_complexity Low_complexity 3 50 0 199 47 0 70 chr6 1704770 1704813 -187574741 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 931 209 138 12 chr6 1706030 1706283 -187573271 + HAL1 LINE L1 3 287 -2220 2904 264 129 52 chr6 1706365 1707869 -187571685 + HAL1 LINE L1 473 2133 -374 2401 81 0 3 chr6 1707869 1708177 -187571377 + AluSc SINE Alu 1 307 -2 2904 264 129 52 chr6 1708177 1708426 -187571128 + HAL1 LINE L1 2133 2361 -146 1593 139 9 118 chr6 1709358 1709689 -187569865 + AluSx SINE Alu 1 295 -17 487 329 50 25 chr6 1711082 1711365 -187568189 - L2 LINE L2 -13 3259 2970 219 245 19 0 chr6 1712140 1712193 -187567361 + GA-rich Low_complexity Low_complexity 1 54 0 937 106 17 11 chr6 1713311 1713665 -187565889 + (CA)n Simple_repeat Simple_repeat 1 356 0 966 109 14 16 chr6 1713683 1714041 -187565513 + (CA)n Simple_repeat Simple_repeat 1 357 0 339 244 11 0 chr6 1715046 1715136 -187564418 + MIR SINE MIR 53 143 -119 2457 84 0 0 chr6 1716098 1716395 -187563159 + AluSx SINE Alu 1 297 -15 421 158 49 0 chr6 1716759 1716841 -187562713 - Charlie5 DNA MER1_type -1366 1246 1161 2142 162 21 9 chr6 1716872 1717297 -187562257 - L1MA6 LINE L1 -6 6294 5865 2521 90 0 3 chr6 1717352 1717664 -187561890 + AluSx SINE Alu 1 311 -1 206 170 0 57 chr6 1717689 1717742 -187561812 + A-rich Low_complexity Low_complexity 1 50 0 2323 101 0 0 chr6 1717747 1718043 -187561511 - AluSg SINE Alu -14 296 1 258 367 35 6 chr6 1718548 1718717 -187560837 - MER5A DNA MER1_type 0 189 16 2339 38 42 7 chr6 1719095 1719384 -187560170 + AluY SINE Alu 1 299 -12 25 0 0 0 chr6 1719953 1719978 -187559576 + AT_rich Low_complexity Low_complexity 1 25 0 183 162 0 0 chr6 1720790 1720827 -187558727 + (CA)n Simple_repeat Simple_repeat 2 38 0 2346 85 0 0 chr6 1722513 1722823 -187556731 - AluSg SINE Alu 0 310 1 207 220 0 0 chr6 1723283 1723333 -187556221 + (CA)n Simple_repeat Simple_repeat 2 51 0 233 278 88 49 chr6 1724021 1724305 -187555249 - HAL1b LINE L1 -1036 312 18 692 176 101 14 chr6 1724408 1724556 -187554998 - MER58B DNA MER1_type 0 341 181 1976 134 13 22 chr6 1725129 1725442 -187554112 + AluSx SINE Alu 1 310 -2 1295 213 14 14 chr6 1725657 1725944 -187553610 - AluJo SINE Alu -15 297 11 29706 95 30 14 chr6 1726115 1727307 -187552247 + L1P3 LINE L1 11 1182 -5287 196 100 0 0 chr6 1727307 1727337 -187552217 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 2184 115 0 0 chr6 1727337 1727615 -187551939 - AluSc SINE Alu -31 278 1 29706 95 30 14 chr6 1727615 1731995 -187547559 + L1P3 LINE L1 1181 5712 -757 591 249 173 76 chr6 1732022 1732089 -187547465 - MLT1H LTR MaLR 0 555 496 2290 95 0 26 chr6 1732089 1732395 -187547159 - AluSq SINE Alu -15 298 1 591 249 173 76 chr6 1732395 1732868 -187546686 - MLT1H LTR MaLR -59 496 1 1100 231 77 3 chr6 1733606 1733905 -187545649 - MER33 DNA MER1_type 0 324 4 241 171 0 0 chr6 1734334 1734375 -187545179 - MER5A DNA MER1_type -5 184 144 374 252 101 25 chr6 1734378 1734537 -187545017 - MER5A DNA MER1_type -18 171 1 195 277 77 0 chr6 1734542 1734607 -187544947 + MIR SINE MIR 23 92 -116 680 80 0 0 chr6 1734615 1734703 -187544851 + AluS SINE Alu 4 91 -221 1265 102 0 0 chr6 1734752 1734918 -187544636 - AluSg/x SINE Alu -18 294 129 451 314 6 13 chr6 1735083 1735239 -187544315 - MIR3 SINE MIR -12 196 42 255 192 20 91 chr6 1735391 1735490 -187544064 - L2 LINE L2 -12 3260 3169 236 252 158 31 chr6 1741396 1741523 -187538031 - MIR3 SINE MIR -63 145 3 1216 139 130 0 chr6 1744392 1744600 -187534954 + MER46A DNA MER2_type 1 235 -1 2025 115 3 73 chr6 1745519 1745849 -187533705 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 1746857 1746879 -187532675 + AT_rich Low_complexity Low_complexity 1 22 0 267 267 141 22 chr6 1747150 1747354 -187532200 + MIR SINE MIR 24 257 -5 226 261 159 11 chr6 1751159 1751247 -187528307 - MER91B DNA MER1_type 0 190 90 285 263 79 0 chr6 1751263 1751339 -187528215 - MER91B DNA MER1_type -61 129 48 1669 163 46 18 chr6 1752229 1752511 -187527043 + AluJo SINE Alu 1 290 -22 313 267 140 13 chr6 1756066 1756216 -187523338 + MIR SINE MIR 82 250 -12 250 337 51 10 chr6 1758573 1758671 -187520883 - MIR SINE MIR -13 249 148 1784 160 7 11 chr6 1758695 1758976 -187520578 + AluJb SINE Alu 1 280 -32 189 107 0 0 chr6 1758979 1759007 -187520547 + (GGAGA)n Simple_repeat Simple_repeat 2 29 0 1793 88 4 0 chr6 1760015 1760243 -187519311 + AluSg/x SINE Alu 81 309 -1 371 247 315 0 chr6 1761170 1761332 -187518222 - MLT1G LTR MaLR -24 566 354 22 0 0 0 chr6 1764604 1764626 -187514928 + AT_rich Low_complexity Low_complexity 1 22 0 967 253 110 67 chr6 1764683 1765304 -187514250 - MER21B LTR ERV1 -154 709 57 1978 151 6 13 chr6 1765349 1765661 -187513893 - AluJb SINE Alu -2 310 1 357 302 0 26 chr6 1766169 1766285 -187513269 - MIR SINE MIR -81 181 69 1958 183 103 19 chr6 1766646 1767056 -187512498 + MLT1D LTR MaLR 1 456 -49 1577 183 35 42 chr6 1767056 1767433 -187512121 - MLT1A2 LTR MaLR 0 374 1 1958 183 103 19 chr6 1767433 1767486 -187512068 + MLT1D LTR MaLR 456 503 -2 1661 269 121 55 chr6 1767646 1768849 -187510705 - HAL1 LINE L1 0 2507 1226 201 213 0 0 chr6 1768911 1768958 -187510596 + L2 LINE L2 2154 2200 -1114 1755 142 0 47 chr6 1770732 1771028 -187508526 + AluJb SINE Alu 6 287 -25 235 184 0 20 chr6 1771256 1771305 -187508249 + (TA)n Simple_repeat Simple_repeat 2 49 0 311 281 22 30 chr6 1772226 1772361 -187507193 + MER5A DNA MER1_type 51 184 -5 1869 161 7 0 chr6 1772829 1773121 -187506433 + MER1B DNA MER1_type 1 294 -45 611 261 22 17 chr6 1773391 1773571 -187505983 - MIR SINE MIR -38 224 44 423 0 0 0 chr6 1774061 1774108 -187505446 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr6 1775790 1775812 -187503742 + AT_rich Low_complexity Low_complexity 1 22 0 244 320 8 23 chr6 1776077 1776205 -187503349 + MIR SINE MIR 48 173 -89 1770 115 3 89 chr6 1776257 1776561 -187502993 - AluSx SINE Alu -9 303 26 225 0 0 0 chr6 1779397 1779422 -187500132 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr6 1781022 1781045 -187498509 + AT_rich Low_complexity Low_complexity 1 23 0 518 281 14 0 chr6 1781267 1781406 -187498148 + Charlie1 DNA MER1_type 1 141 -2620 983 174 134 13 chr6 1781409 1781708 -187497846 + Charlie1 DNA MER1_type 2427 2761 0 750 185 0 0 chr6 1781822 1781952 -187497602 + FLAM_A SINE Alu 2 131 -2 357 109 0 0 chr6 1782263 1782318 -187497236 + (CA)n Simple_repeat Simple_repeat 2 56 0 1731 168 4 0 chr6 1782874 1783142 -187496412 - AluJo SINE Alu -20 292 24 305 261 43 0 chr6 1783307 1783376 -187496178 + L2 LINE L2 3146 3217 -55 1080 238 45 26 chr6 1783431 1783851 -187495703 + L1M4 LINE L1 4852 5279 -867 26 0 0 0 chr6 1784489 1784515 -187495039 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr6 1784728 1784751 -187494803 + (TG)n Simple_repeat Simple_repeat 2 24 0 197 274 66 47 chr6 1785869 1785975 -187493579 - L2 LINE L2 -23 3290 3183 2108 120 38 0 chr6 1786114 1786406 -187493148 - AluSx SINE Alu -9 303 1 260 280 175 66 chr6 1787751 1788162 -187491392 - L2 LINE L2 -4 3309 2854 293 322 9 26 chr6 1788293 1788408 -187491146 + GA-rich Low_complexity Low_complexity 3 115 0 1520 172 32 36 chr6 1788764 1789072 -187490482 + AluJo SINE Alu 1 307 -5 21 57 0 0 chr6 1789074 1789109 -187490445 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr6 1790505 1790533 -187489021 + AT_rich Low_complexity Low_complexity 1 28 0 189 304 18 0 chr6 1792007 1792063 -187487491 - L2 LINE L2 -4 3309 3253 227 79 26 0 chr6 1792932 1792970 -187486584 + (CA)n Simple_repeat Simple_repeat 2 40 0 2451 89 0 0 chr6 1794149 1794451 -187485103 + AluSq SINE Alu 1 302 -11 311 192 14 0 chr6 1794512 1794585 -187484969 + (TA)n Simple_repeat Simple_repeat 1 74 0 194 347 56 0 chr6 1794640 1794712 -187484842 + MIR SINE MIR 47 122 -140 234 136 0 0 chr6 1794858 1794902 -187484652 + (CA)n Simple_repeat Simple_repeat 1 44 0 2240 107 3 3 chr6 1795301 1795600 -187483954 + AluSq SINE Alu 1 299 -14 198 0 0 0 chr6 1795600 1795622 -187483932 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr6 1795980 1796001 -187483553 + AT_rich Low_complexity Low_complexity 1 21 0 249 57 0 0 chr6 1797427 1797462 -187482092 + (T)n Simple_repeat Simple_repeat 1 35 0 355 303 128 38 chr6 1800411 1800636 -187478918 + MIR SINE MIR 15 262 0 284 325 41 16 chr6 1800704 1800827 -187478727 + L2 LINE L2 3174 3299 -14 2853 173 52 12 chr6 1801282 1801550 -187478004 - MER7C DNA MER2_type -2426 602 346 1936 145 0 22 chr6 1801550 1801861 -187477693 + AluSx SINE Alu 1 304 -8 2853 173 52 12 chr6 1801861 1802170 -187477384 - MER7C DNA MER2_type -2682 346 2 1407 201 24 21 chr6 1802608 1802896 -187476658 + AluJo SINE Alu 1 289 -23 420 20 0 0 chr6 1802902 1802951 -187476603 + (TG)n Simple_repeat Simple_repeat 2 50 0 197 231 0 15 chr6 1802958 1803023 -187476531 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 4454 196 61 16 chr6 1803474 1804629 -187474925 + L1M4c LINE L1 546 1752 -4632 2218 148 45 28 chr6 1804645 1805071 -187474483 - Tigger2a DNA MER2_type -1 433 1 212 353 8 0 chr6 1805071 1805204 -187474350 + (TA)n Simple_repeat Simple_repeat 1 134 0 1530 197 3 19 chr6 1805252 1805562 -187473992 - AluJb SINE Alu -7 305 1 968 181 10 0 chr6 1805861 1806054 -187473500 - MER3 DNA MER1_type -3 206 12 745 171 101 0 chr6 1806073 1806231 -187473323 - MER20 DNA MER1_type 0 219 46 22 0 0 0 chr6 1807816 1807838 -187471716 + AT_rich Low_complexity Low_complexity 1 22 0 452 131 0 0 chr6 1807905 1807966 -187471588 + AluJo SINE Alu 10 70 -242 227 69 0 0 chr6 1807968 1807997 -187471557 - Alu SINE Alu -28 105 77 1349 144 5 14 chr6 1808003 1808211 -187471343 + AluJo SINE Alu 72 277 -35 207 0 0 0 chr6 1808950 1808973 -187470581 + (T)n Simple_repeat Simple_repeat 1 23 0 200 268 0 0 chr6 1809333 1809374 -187470180 + polypyrimidine Low_complexity Low_complexity 5 45 0 22 56 0 0 chr6 1809847 1809883 -187469671 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr6 1810838 1810869 -187468685 + AT_rich Low_complexity Low_complexity 1 31 0 183 328 31 47 chr6 1810931 1811059 -187468495 - L2 LINE L2 -197 3116 2991 1902 88 74 14 chr6 1811662 1811990 -187467564 - AluY SINE Alu 0 311 1 233 200 50 17 chr6 1816144 1816204 -187463350 + L2 LINE L2 3249 3310 -3 320 332 119 20 chr6 1817844 1818046 -187461508 + L2 LINE L2 2827 3048 -224 384 238 109 32 chr6 1818363 1818551 -187461003 + MLT1L LTR MaLR 299 606 -9 1561 165 33 15 chr6 1818656 1818929 -187460625 + AluJb SINE Alu 1 278 -34 378 0 0 0 chr6 1818933 1818975 -187460579 + (TAAAA)n Simple_repeat Simple_repeat 3 44 0 1937 161 0 3 chr6 1819309 1819607 -187459947 + AluSx SINE Alu 1 297 -15 318 345 45 8 chr6 1819875 1820075 -187459479 - MIR SINE MIR -3 259 3 214 225 0 0 chr6 1821055 1821095 -187458459 - MIR SINE MIR -102 106 67 2187 126 21 12 chr6 1821412 1821746 -187457808 - MER1B DNA MER1_type 0 337 1 2100 149 0 9 chr6 1821901 1822216 -187457338 - AluJb SINE Alu 0 312 1 1644 161 30 0 chr6 1822905 1823172 -187456382 - AluJo SINE Alu -37 275 1 241 238 48 0 chr6 1823819 1823882 -187455672 - L2 LINE L2 -253 3060 2995 188 239 195 58 chr6 1824005 1824231 -187455323 + L2 LINE L2 2804 3060 -212 217 330 31 31 chr6 1824429 1824653 -187454901 - L2 LINE L2 -935 2379 2156 1045 169 13 58 chr6 1824705 1824930 -187454624 - MER20 DNA MER1_type -4 215 1 31 26 0 0 chr6 1827528 1827566 -187451988 + AT_rich Low_complexity Low_complexity 1 38 0 2022 101 24 0 chr6 1828535 1828822 -187450732 - AluSp SINE Alu -16 297 4 2751 16 0 0 chr6 1829060 1829364 -187450190 + AluY SINE Alu 1 304 -7 513 239 54 8 chr6 1830293 1830423 -187449131 + MER20 DNA MER1_type 2 137 -82 192 263 211 0 chr6 1835492 1835644 -187443910 + MIR3 SINE MIR 25 208 0 1211 231 35 19 chr6 1836083 1836455 -187443099 + L1ME1 LINE L1 5782 6159 -7 195 42 0 0 chr6 1837442 1837466 -187442088 + (A)n Simple_repeat Simple_repeat 1 24 0 27 49 0 0 chr6 1838098 1838139 -187441415 + AT_rich Low_complexity Low_complexity 1 41 0 198 103 0 0 chr6 1839304 1839333 -187440221 + (TG)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr6 1839704 1839735 -187439819 + AT_rich Low_complexity Low_complexity 1 31 0 205 156 0 0 chr6 1841445 1841477 -187438077 + GA-rich Low_complexity Low_complexity 3 34 0 2256 92 17 0 chr6 1843813 1844108 -187435446 - AluSg SINE Alu -10 300 1 21 57 0 0 chr6 1844683 1844718 -187434836 + AT_rich Low_complexity Low_complexity 1 35 0 189 275 63 106 chr6 1845044 1845186 -187434368 - L2 LINE L2 -1828 1486 1351 261 0 0 0 chr6 1846882 1846911 -187432643 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr6 1847216 1847238 -187432316 + AT_rich Low_complexity Low_complexity 1 22 0 306 0 0 0 chr6 1851141 1851175 -187428379 + (CA)n Simple_repeat Simple_repeat 2 35 0 2018 123 36 0 chr6 1851567 1851869 -187427685 + AluSp SINE Alu 1 313 0 1338 88 0 0 chr6 1851924 1852094 -187427460 + AluSq SINE Alu 126 295 -18 188 263 88 44 chr6 1852388 1852502 -187427052 + MIR SINE MIR 90 208 -54 2008 155 7 7 chr6 1853181 1853491 -187426063 + AluJo SINE Alu 1 310 -2 2535 59 0 7 chr6 1853856 1854162 -187425392 + AluY SINE Alu 2 305 -6 256 333 65 54 chr6 1854745 1854913 -187424641 + L2 LINE L2 3101 3270 -2 25 65 0 0 chr6 1855005 1855051 -187424503 + AT_rich Low_complexity Low_complexity 1 46 0 1476 211 6 35 chr6 1855989 1856302 -187423252 + AluJo SINE Alu 1 304 -8 2071 115 35 0 chr6 1858944 1859231 -187420323 + AluSc SINE Alu 1 297 -12 22 35 0 0 chr6 1859605 1859634 -187419920 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr6 1859813 1859841 -187419713 + AT_rich Low_complexity Low_complexity 1 28 0 21 100 0 0 chr6 1862424 1862494 -187417060 + AT_rich Low_complexity Low_complexity 1 70 0 473 223 218 40 chr6 1862763 1862965 -187416589 - MIR SINE MIR -12 250 13 256 306 137 8 chr6 1863002 1863126 -187416428 - MIR SINE MIR -76 186 47 1085 199 15 0 chr6 1863551 1863752 -187415802 + MER2 DNA MER2_type 1 204 -141 1093 158 19 98 chr6 1863752 1864041 -187415513 - AluJo SINE Alu 0 312 54 1969 123 44 27 chr6 1864043 1864410 -187415144 - THE1C LTR MaLR -2 373 1 2442 113 5 15 chr6 1864410 1864799 -187414755 - THE1C-int LTR MaLR 0 1580 1196 284 203 2 48 chr6 1864799 1864872 -187414682 - AluJ/FLAM SINE Alu -244 58 1 21 36 0 0 chr6 1864874 1864902 -187414652 + AT_rich Low_complexity Low_complexity 1 28 0 3247 188 65 28 chr6 1865494 1866510 -187413044 - L1MB7 LINE L1 -78 6106 5044 234 176 0 0 chr6 1866728 1866779 -187412775 - L1MB7 LINE L1 -1118 5028 4978 263 232 14 14 chr6 1866782 1866851 -187412703 - L1MB7 LINE L1 -1250 4896 4828 864 203 16 5 chr6 1867468 1867655 -187411899 + MER5A DNA MER1_type 1 189 0 2083 141 7 0 chr6 1868190 1868481 -187411073 - AluSx SINE Alu -19 293 1 2305 86 26 0 chr6 1869005 1869309 -187410245 - AluSx SINE Alu 0 312 1 21 57 0 0 chr6 1870265 1870300 -187409254 + AT_rich Low_complexity Low_complexity 1 35 0 707 256 20 0 chr6 1871246 1871445 -187408109 - MER3 DNA MER1_type -1 208 6 211 337 71 10 chr6 1871752 1871850 -187407704 - L2 LINE L2 -32 3240 3137 654 207 165 0 chr6 1871954 1872142 -187407412 - MER20 DNA MER1_type 0 219 1 184 279 93 31 chr6 1872743 1872872 -187406682 - L2 LINE L2 -798 2516 2380 1367 150 26 51 chr6 1872948 1873261 -187406293 - MLT1B LTR MaLR -85 305 1 189 243 229 0 chr6 1873301 1873371 -187406183 + MIR SINE MIR 16 101 -161 944 179 16 0 chr6 1873445 1873635 -187405919 - L1MA4 LINE L1 -101 6199 6007 238 309 0 28 chr6 1873827 1874005 -187405549 + (CCCTA)n Simple_repeat Simple_repeat 2 174 0 236 300 100 0 chr6 1874147 1874217 -187405337 - MIR3 SINE MIR -14 194 118 366 349 50 15 chr6 1874616 1874814 -187404740 - L2 LINE L2 -4 3309 3105 230 241 0 17 chr6 1874911 1874969 -187404585 + CT-rich Low_complexity Low_complexity 1 57 0 308 241 13 0 chr6 1876355 1876434 -187403120 - L1ME3A LINE L1 -4 6166 6087 213 312 128 9 chr6 1876558 1876667 -187402887 + MIR3 SINE MIR 78 199 -9 246 306 97 45 chr6 1877562 1877696 -187401858 - L2 LINE L2 -1 3312 3172 209 280 50 30 chr6 1880864 1880964 -187398590 + MIR SINE MIR 20 121 -141 3038 184 38 6 chr6 1883655 1884188 -187395366 - MER44D DNA MER2_type 0 605 1 238 317 29 39 chr6 1884634 1884738 -187394816 + MIR3 SINE MIR 9 111 -97 871 174 76 76 chr6 1885779 1886054 -187393500 + MER33 DNA MER1_type 49 323 -1 218 329 14 0 chr6 1886368 1886441 -187393113 - MIR3 SINE MIR -54 154 81 2134 121 0 0 chr6 1887907 1888196 -187391358 + AluSx SINE Alu 1 289 -23 2825 16 0 0 chr6 1888923 1889233 -187390321 + AluYa5 SINE Alu 1 310 -1 267 54 0 0 chr6 1889944 1889981 -187389573 + (T)n Simple_repeat Simple_repeat 1 37 0 2249 99 0 34 chr6 1889998 1890320 -187389234 + AluY SINE Alu 1 311 0 192 257 176 0 chr6 1891731 1891805 -187387749 + L3 LINE CR1 1345 1431 -146 309 232 26 13 chr6 1892250 1892405 -187387149 + GA-rich Low_complexity Low_complexity 1 157 0 1737 183 6 10 chr6 1894288 1894600 -187384954 + AluJb SINE Alu 1 311 -1 313 264 104 48 chr6 1894914 1895039 -187384515 - L2 LINE L2 -8 3264 3133 2506 157 179 118 chr6 1898243 1898672 -187380882 + LTR28 LTR ERV1 1 403 -617 2247 118 53 34 chr6 1898672 1899029 -187380525 + THE1B LTR MaLR 1 364 0 2506 157 179 118 chr6 1899029 1899561 -187379993 + LTR28 LTR ERV1 403 1020 0 219 279 118 37 chr6 1899659 1899795 -187379759 + MIR3 SINE MIR 1 147 -61 186 258 106 15 chr6 1900444 1900510 -187379044 + L2 LINE L2 3237 3308 -5 507 93 40 0 chr6 1900716 1900791 -187378763 + AluY SINE Alu 216 293 -18 4504 127 49 39 chr6 1901528 1902305 -187377249 + LTR1 LTR ERV1 1 785 0 23 0 0 0 chr6 1903377 1903400 -187376154 + AT_rich Low_complexity Low_complexity 1 23 0 2255 114 0 0 chr6 1903908 1904207 -187375347 + AluSc SINE Alu 1 299 -10 2082 123 0 0 chr6 1904510 1904830 -187374724 + AluSx SINE Alu 1 320 0 251 313 71 0 chr6 1907672 1907771 -187371783 - L2 LINE L2 0 3313 3208 460 268 65 0 chr6 1908086 1908209 -187371345 - MIR SINE MIR -40 222 92 2537 57 0 3 chr6 1908358 1908658 -187370896 - AluY SINE Alu -9 302 4 4396 205 22 16 chr6 1908687 1910489 -187369065 - L1MB7 LINE L1 -10 6174 4362 266 286 13 13 chr6 1910990 1911067 -187368487 + MIR SINE MIR 62 138 -70 219 241 232 9 chr6 1911161 1911273 -187368281 + MIR SINE MIR 126 262 0 322 250 88 29 chr6 1911623 1911759 -187367795 + L1MEd LINE L1 2 145 -5974 1129 147 121 152 chr6 1912434 1912508 -187367046 + Tigger3(Golem) DNA MER2_type 5 80 -2948 2279 120 0 0 chr6 1912508 1912809 -187366745 + AluSx SINE Alu 1 301 -11 1129 147 121 152 chr6 1912809 1913089 -187366465 + Tigger3(Golem) DNA MER2_type 80 3028 0 1153 216 113 72 chr6 1913241 1913685 -187365869 - MLT1C LTR MaLR 0 467 6 815 120 45 53 chr6 1913714 1913847 -187365707 + FLAM_C SINE Alu 1 132 -1 582 263 108 31 chr6 1914238 1914751 -187364803 - L1MEd LINE L1 -4739 1392 958 390 205 0 0 chr6 1914753 1914836 -187364718 + C-rich Low_complexity Low_complexity 4 86 0 479 305 94 15 chr6 1914879 1915210 -187364344 - L1MEd LINE L1 -5194 925 569 339 278 0 21 chr6 1915309 1915406 -187364148 - L1MC4 LINE L1 -1334 6708 6614 270 81 0 0 chr6 1915406 1915443 -187364111 + (CA)n Simple_repeat Simple_repeat 2 38 0 183 80 0 0 chr6 1915999 1916024 -187363530 + (CATG)n Simple_repeat Simple_repeat 2 26 0 807 214 107 5 chr6 1916649 1916845 -187362709 - MER20 DNA MER1_type 0 219 4 769 279 259 13 chr6 1917019 1917696 -187361858 - L2 LINE L2 -1020 2294 1452 345 279 39 90 chr6 1918450 1918683 -187360871 + MLT1K LTR MaLR 360 580 -8 349 330 35 9 chr6 1919206 1919321 -187360233 + L2 LINE L2 3181 3298 -15 2209 80 3 0 chr6 1920048 1920334 -187359220 + AluY SINE Alu 1 287 -24 1457 52 0 0 chr6 1920345 1920518 -187359036 + AluYa8 SINE Alu 133 305 -5 632 236 0 8 chr6 1921452 1921579 -187357975 + FLAM_A SINE Alu 1 126 -7 462 289 168 10 chr6 1922120 1922317 -187357237 + MIR SINE MIR 25 252 -10 542 289 54 0 chr6 1923857 1924023 -187355531 - MIR SINE MIR -45 217 43 870 151 11 81 chr6 1924313 1924499 -187355055 + AluJo SINE Alu 120 292 -20 294 260 60 30 chr6 1925069 1925169 -187354385 - MIR SINE MIR -91 171 69 798 202 19 84 chr6 1926706 1926919 -187352635 - MER20 DNA MER1_type -19 200 2 846 152 15 8 chr6 1927386 1927518 -187352036 - AluJb SINE Alu -178 134 2 249 278 55 35 chr6 1927875 1928005 -187351549 + MIR SINE MIR 54 187 -21 22 0 0 0 chr6 1929638 1929660 -187349894 + AT_rich Low_complexity Low_complexity 1 22 0 3428 155 37 12 chr6 1930014 1930606 -187348948 - Tigger1 DNA MER2_type -128 2290 1684 2177 161 45 15 chr6 1930602 1930999 -187348555 - Tigger1 DNA MER2_type -1980 438 30 * 405 178 89 141 chr6 1931014 1931149 -187348405 - MER7A DNA MER2_type -220 126 1 180 111 0 0 chr6 1931591 1931618 -187347936 + (A)n Simple_repeat Simple_repeat 1 27 0 753 236 144 5 chr6 1932019 1932214 -187347340 - MER58A DNA MER1_type -2 222 1 2149 95 35 3 chr6 1932641 1932926 -187346628 - AluSx SINE Alu -18 294 1 380 271 119 0 chr6 1933070 1933188 -187346366 - L2 LINE L2 0 3272 3141 1694 184 0 14 chr6 1933635 1933929 -187345625 - AluJo SINE Alu -22 290 1 23 33 0 0 chr6 1933929 1933959 -187345595 + AT_rich Low_complexity Low_complexity 1 30 0 1142 183 69 19 chr6 1934912 1935174 -187344380 + L1MA5A LINE L1 6002 6276 -21 195 299 10 72 chr6 1937098 1937195 -187342359 - MER5A DNA MER1_type -63 126 36 * 239 231 44 66 chr6 1937123 1937214 -187342340 + MER5A DNA MER1_type 96 184 -5 1990 169 58 64 chr6 1937882 1938688 -187340866 - L1MB7 LINE L1 -1 6183 5373 2411 110 0 0 chr6 1938688 1938998 -187340556 - AluSg SINE Alu 0 310 1 1091 147 24 18 chr6 1939005 1939175 -187340379 - FAM SINE Alu -4 171 1 1990 169 58 64 chr6 1939175 1939490 -187340064 - L1MB7 LINE L1 -817 5367 4868 182 266 78 16 chr6 1939743 1939807 -187339747 - MIR SINE MIR -83 125 58 208 233 67 100 chr6 1940180 1940270 -187339284 - MIR SINE MIR -3 259 173 4819 36 21 5 chr6 1940511 1941070 -187338484 - L1PA4 LINE L1 -6 6149 5582 1551 180 7 34 chr6 1941364 1941658 -187337896 + AluJo SINE Alu 1 286 -26 840 246 24 28 chr6 1941765 1941976 -187337578 + MER58A DNA MER1_type 13 222 -2 221 360 56 0 chr6 1942681 1942770 -187336784 + L2 LINE L2 2543 2636 -678 367 260 309 18 chr6 1942789 1943178 -187336376 + L2 LINE L2 2811 3312 -1 247 273 45 0 chr6 1944653 1944719 -187334835 + L2 LINE L2 3142 3210 -62 2600 64 0 3 chr6 1944803 1945114 -187334440 + AluY SINE Alu 1 310 -1 26 0 0 0 chr6 1945143 1945169 -187334385 + AT_rich Low_complexity Low_complexity 1 26 0 400 257 64 9 chr6 1945679 1945788 -187333766 + L2 LINE L2 3197 3311 -2 1339 123 30 5 chr6 1946589 1946792 -187332762 + L1PA10 LINE L1 5954 6161 -7 41 66 0 0 chr6 1947990 1948066 -187331488 + AT_rich Low_complexity Low_complexity 1 76 0 24 53 0 0 chr6 1948086 1948124 -187331430 + AT_rich Low_complexity Low_complexity 1 38 0 927 279 18 21 chr6 1948374 1948654 -187330900 + Charlie4 DNA MER1_type 18 296 -1665 683 225 58 17 chr6 1948653 1948826 -187330728 + Charlie4 DNA MER1_type 1782 1961 0 * 22 0 0 0 chr6 1949470 1949492 -187330062 + AT_rich Low_complexity Low_complexity 1 22 0 2303 97 0 23 chr6 1950572 1950881 -187328673 + AluSx SINE Alu 1 302 -10 451 174 87 0 chr6 1952177 1952269 -187327285 + L2 LINE L2 3173 3272 0 22702 185 35 19 chr6 1953304 1957847 -187321707 + L1PB4 LINE L1 18 5488 -2124 1754 105 0 4 chr6 1957847 1958076 -187321478 + AluSq SINE Alu 1 228 -85 22702 185 35 19 chr6 1958076 1959652 -187319902 + L1PB4 LINE L1 5488 7037 -575 682 242 47 38 chr6 1959782 1959993 -187319561 + AluJo SINE Alu 81 293 -19 1637 220 24 3 chr6 1959998 1960330 -187319224 + L1PB4 LINE L1 7250 7588 -6 226 296 148 28 chr6 1960763 1960905 -187318649 + L1MCa LINE L1 232 390 -6036 350 243 72 27 chr6 1961063 1961174 -187318380 + L2 LINE L2 3197 3312 -1 915 181 40 6 chr6 1961979 1962156 -187317398 + L1PA11 LINE L1 5956 6138 -36 464 307 63 70 chr6 1962395 1962868 -187316686 + L2 LINE L2 2844 3313 0 25 31 0 0 chr6 1963459 1963491 -187316063 + AT_rich Low_complexity Low_complexity 1 32 0 303 260 78 89 chr6 1964126 1964320 -187315234 - L1MEc LINE L1 -822 2079 1844 253 336 45 9 chr6 1965276 1965386 -187314168 + L2 LINE L2 3150 3263 -9 292 350 60 0 chr6 1966355 1966455 -187313099 - L2 LINE L2 -9 3263 3158 2591 121 6 6 chr6 1967527 1967891 -187311663 + L1PA11 LINE L1 5803 6166 -8 195 351 69 8 chr6 1968109 1968240 -187311314 + L2 LINE L2 2617 2755 -559 2457 71 0 3 chr6 1969268 1969565 -187309989 - AluY SINE Alu -13 298 3 1055 192 75 43 chr6 1969568 1969849 -187309705 - L1MB8 LINE L1 -72 6106 5817 997 175 0 29 chr6 1969887 1970058 -187309496 - FRAM SINE Alu -10 166 1 2684 182 34 12 chr6 1970058 1970721 -187308833 - L1MB8 LINE L1 -351 5827 5152 1443 227 60 5 chr6 1970759 1971143 -187308411 + L1M4 LINE L1 4611 5015 -1131 413 262 73 60 chr6 1971146 1971394 -187308160 - HAL1b LINE L1 -616 732 482 377 286 259 5 chr6 1971432 1971617 -187307937 - L2 LINE L2 0 3313 3082 376 215 74 74 chr6 1971626 1971789 -187307765 + HAL1b LINE L1 905 1067 -281 355 269 44 55 chr6 1972779 1972961 -187306593 + MLT1J LTR MaLR 253 432 -79 223 240 56 112 chr6 1973163 1973342 -187306212 + L2 LINE L2 2894 3062 -210 2172 130 0 0 chr6 1973578 1973895 -187305659 - AluSx SINE Alu 0 317 1 282 227 175 10 chr6 1974665 1974762 -187304792 + MER103 DNA DNA 37 149 -17 230 253 84 0 chr6 1975437 1975520 -187304034 - MLT1I LTR MaLR -315 94 5 219 69 0 0 chr6 1975802 1975831 -187303723 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 716 247 97 23 chr6 1978204 1978463 -187301091 - L2 LINE L2 -1 3312 3035 678 262 29 44 chr6 1978533 1978739 -187300815 - MIR SINE MIR -13 249 47 22 70 0 0 chr6 1979470 1979513 -187300041 + AT_rich Low_complexity Low_complexity 1 43 0 382 161 39 23 chr6 1981243 1981373 -187298181 + CT-rich Low_complexity Low_complexity 3 134 0 1225 304 83 15 chr6 1981619 1982090 -187297464 - MLT1J LTR MaLR -8 503 1 2311 93 0 3 chr6 1982417 1982717 -187296837 + AluSc SINE Alu 1 299 -10 254 182 55 0 chr6 1983574 1983629 -187295925 + GA-rich Low_complexity Low_complexity 4 61 0 318 313 57 62 chr6 1983629 1983717 -187295837 + HAL1b LINE L1 430 517 -831 1292 219 75 0 chr6 1983717 1984037 -187295517 - MER2 DNA MER2_type 0 344 1 318 313 57 62 chr6 1984037 1984175 -187295379 + HAL1b LINE L1 517 655 -693 2337 87 3 0 chr6 1984231 1984530 -187295024 + AluSg SINE Alu 1 300 -10 311 261 27 27 chr6 1984943 1985054 -187294500 - HAL1b LINE L1 -517 831 721 463 36 99 0 chr6 1985085 1985196 -187294358 + (TA)n Simple_repeat Simple_repeat 2 123 0 6246 148 65 25 chr6 1985688 1986871 -187292683 - Tigger3b DNA MER2_type 0 1231 1 420 247 9 57 chr6 1987394 1987579 -187291975 + MER34 LTR ERV1 1 201 -341 * 774 215 45 33 chr6 1987578 1987820 -187291734 + MER39 LTR ERV1 463 707 0 201 313 0 0 chr6 1987894 1987961 -187291593 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 520 202 47 0 chr6 1990303 1990432 -187289122 + Charlie5 DNA MER1_type 2450 2584 -28 5633 110 16 14 chr6 1990475 1991476 -187288078 + L1PA13 LINE L1 5160 6160 -3 25 0 0 0 chr6 1991865 1991890 -187287664 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr6 1992059 1992096 -187287458 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr6 1992520 1992549 -187287005 + AT_rich Low_complexity Low_complexity 1 29 0 1804 159 7 13 chr6 1992679 1992980 -187286574 + AluJo SINE Alu 1 299 -13 1416 223 84 12 chr6 1993209 1993783 -187285771 + L1M4 LINE L1 2613 3227 -2919 2132 133 0 0 chr6 1993948 1994256 -187285298 - AluSx SINE Alu -4 308 1 1111 183 68 8 chr6 1994258 1994493 -187285061 - Tigger2 DNA MER2_type 0 2718 2470 29 28 0 0 chr6 1994619 1994655 -187284899 + AT_rich Low_complexity Low_complexity 1 36 0 3790 193 33 18 chr6 1994965 1995757 -187283797 - L1MB8 LINE L1 -6 6172 5369 2304 231 26 44 chr6 1995737 1996134 -187283420 - L1MB8 LINE L1 -1780 4366 3986 * 1906 111 50 0 chr6 1996134 1996396 -187283158 - AluSx SINE Alu -37 275 1 2304 231 26 44 chr6 1996396 1996720 -187282834 - L1MB8 LINE L1 -2160 3986 3658 187 51 0 51 chr6 1996952 1996991 -187282563 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 21 36 0 0 chr6 1998212 1998240 -187281314 + AT_rich Low_complexity Low_complexity 1 28 0 292 311 50 42 chr6 2000399 2000637 -187278917 + L1MEc LINE L1 1093 1332 -4873 314 275 79 44 chr6 2000761 2000970 -187278584 + L1MEc LINE L1 1546 1761 -815 450 0 0 0 chr6 2002006 2002056 -187277498 + (TG)n Simple_repeat Simple_repeat 2 51 0 211 200 0 0 chr6 2002134 2002169 -187277385 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr6 2003564 2003588 -187275966 + AT_rich Low_complexity Low_complexity 1 24 0 180 111 0 0 chr6 2004782 2004809 -187274745 + (T)n Simple_repeat Simple_repeat 1 27 0 27 0 0 0 chr6 2005638 2005665 -187273889 + AT_rich Low_complexity Low_complexity 1 27 0 263 243 171 0 chr6 2006807 2006877 -187272677 - Charlie8 DNA MER1_type -992 1425 1344 332 193 263 18 chr6 2006881 2006995 -187272559 - MER5A DNA MER1_type 0 189 48 832 264 63 70 chr6 2007106 2007579 -187271975 - L2 LINE L2 0 3313 2844 398 277 43 28 chr6 2008339 2008480 -187271074 - L2 LINE L2 0 3313 3171 422 320 19 13 chr6 2009522 2009678 -187269876 - MER5A DNA MER1_type -1 188 32 228 252 56 9 chr6 2009785 2009892 -187269662 + Charlie7 DNA MER1_type 2435 2546 -66 479 239 62 0 chr6 2009959 2010089 -187269465 - MER58C DNA MER1_type 0 215 78 600 146 21 0 chr6 2010099 2010195 -187269359 + L1MB7 LINE L1 5894 5991 -193 296 314 176 29 chr6 2011828 2012140 -187267414 + L2 LINE L2 1963 2320 -994 1464 202 7 20 chr6 2012184 2012486 -187267068 + AluJo SINE Alu 1 298 -14 206 245 0 0 chr6 2013570 2013623 -187265931 + T-rich Low_complexity Low_complexity 1 53 0 283 128 0 0 chr6 2013626 2013673 -187265881 - L1PA16 LINE L1 0 6166 6120 255 314 67 0 chr6 2015029 2015134 -187264420 - MIR SINE MIR -30 232 121 186 351 13 26 chr6 2015333 2015410 -187264144 + MER5A DNA MER1_type 45 120 -69 1331 265 122 40 chr6 2015904 2016087 -187263467 + L1MDa LINE L1 1475 1641 -5080 2347 103 0 0 chr6 2016087 2016397 -187263157 + AluSg SINE Alu 1 310 0 1331 265 122 40 chr6 2016397 2017152 -187262402 + L1MDa LINE L1 1641 2536 -4185 * 4855 141 26 22 chr6 2017136 2017672 -187261882 + L1PB4 LINE L1 5291 5833 -323 1318 206 29 32 chr6 2017672 2017983 -187261571 + AluJo SINE Alu 1 310 -2 4855 141 26 22 chr6 2017983 2018307 -187261247 + L1PB4 LINE L1 5833 6154 -2 409 257 104 15 chr6 2018322 2018524 -187261030 + L1MDa LINE L1 2509 2728 -3812 * 3240 238 151 69 chr6 2018519 2019966 -187259588 + L1MCa LINE L1 26 1352 -5074 318 50 0 0 chr6 2019966 2020006 -187259548 + (TA)n Simple_repeat Simple_repeat 2 41 0 3240 238 151 69 chr6 2020006 2021677 -187257877 + L1MCa LINE L1 1352 3409 -3017 1378 180 117 25 chr6 2021678 2021995 -187257559 - MER44D DNA MER2_type -1 604 387 1607 161 16 82 chr6 2021995 2022312 -187257242 + AluJb SINE Alu 1 296 -16 392 303 0 0 chr6 2022370 2022515 -187257039 + L1MDa LINE L1 2757 2901 -3639 1458 184 4 11 chr6 2022616 2022887 -187256667 - AluJb SINE Alu -23 289 21 2163 115 0 7 chr6 2023630 2023935 -187255619 - AluSq SINE Alu -10 303 1 23 68 0 0 chr6 2023955 2023999 -187255555 + AT_rich Low_complexity Low_complexity 1 44 0 787 252 96 32 chr6 2024521 2025021 -187254533 - L1M4 LINE L1 -1331 4815 4284 1159 175 154 34 chr6 2025025 2025350 -187254204 + MLT1A2 LTR MaLR 7 370 -4 289 265 82 20 chr6 2025355 2025551 -187254003 - L1M4 LINE L1 -1862 4284 4077 1144 195 8 51 chr6 2025615 2025872 -187253682 + MLT1D LTR MaLR 2 247 -258 8396 69 3 2 chr6 2025873 2027018 -187252536 + L1P LINE L1 2837 3982 -2164 1837 79 12 8 chr6 2027018 2027269 -187252285 + L1PA6 LINE L1 5902 6154 0 876 190 109 19 chr6 2027280 2027491 -187252063 + MLT1D LTR MaLR 269 498 -7 745 287 54 9 chr6 2027529 2027846 -187251708 - L1M4 LINE L1 -2229 3917 3587 552 229 70 78 chr6 2027922 2027983 -187251571 - L1M4 LINE L1 -3525 2621 2561 2466 81 0 0 chr6 2027983 2028290 -187251264 + AluSg SINE Alu 1 307 -3 552 229 70 78 chr6 2028290 2028512 -187251042 - L1M4 LINE L1 -3585 2561 2340 186 408 26 26 chr6 2028513 2028665 -187250889 - L2 LINE L2 -225 3047 2896 238 303 56 42 chr6 2028722 2028864 -187250690 + MLT1L LTR MaLR 44 187 -428 342 330 135 14 chr6 2028932 2029147 -187250407 + MLT1L LTR MaLR 353 593 -22 1196 215 111 82 chr6 2030423 2030944 -187248610 + L1ME LINE L1 929 1464 -5483 181 0 33 33 chr6 2030945 2030975 -187248579 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 811 230 86 63 chr6 2030979 2031571 -187247983 + L1ME LINE L1 1413 2141 -4816 195 247 193 30 chr6 2031884 2032053 -187247501 + MIR SINE MIR 2 246 -16 369 263 10 0 chr6 2032164 2032263 -187247291 - MER104 DNA Tc2 -12 168 69 641 263 43 16 chr6 2032331 2032517 -187247037 - MIR SINE MIR -59 203 13 432 343 6 23 chr6 2032709 2032884 -187246670 + MER5B DNA MER1_type 4 175 -3 25 0 0 0 chr6 2033042 2033067 -187246487 + AT_rich Low_complexity Low_complexity 1 25 0 245 309 119 40 chr6 2033372 2033498 -187246056 + L2 LINE L2 3136 3271 -1 691 260 73 0 chr6 2033914 2034106 -187245448 + MER3 DNA MER1_type 4 209 0 1871 126 72 0 chr6 2034223 2034501 -187245053 + AluSx SINE Alu 1 298 -14 264 337 0 20 chr6 2034634 2034735 -187244819 + L3 LINE CR1 1362 1460 -117 2138 125 13 0 chr6 2035047 2035352 -187244202 + AluSx SINE Alu 4 312 0 2783 10 0 0 chr6 2035573 2035874 -187243680 + AluY SINE Alu 1 301 -10 569 295 105 45 chr6 2036593 2036894 -187242660 - L2 LINE L2 -1 3312 2970 2121 93 45 0 chr6 2036894 2037183 -187242371 + AluSc SINE Alu 1 302 -7 569 295 105 45 chr6 2037183 2037373 -187242181 - L2 LINE L2 -343 2970 2793 2100 139 0 7 chr6 2037581 2037890 -187241664 + AluSx SINE Alu 1 307 -5 329 301 107 11 chr6 2038924 2039099 -187240455 + MIR SINE MIR 21 214 -48 293 354 0 0 chr6 2039225 2039324 -187240230 + L2 LINE L2 3210 3308 -5 365 296 176 0 chr6 2040959 2041101 -187238453 - MIR SINE MIR -12 250 84 37606 34 25 2 chr6 2041114 2046578 -187232976 + L1PA3 LINE L1 564 6155 0 245 167 0 17 chr6 2046579 2046639 -187232915 - Charlie4 DNA MER1_type -133 1828 1770 245 259 45 80 chr6 2047964 2048076 -187231478 + MIR SINE MIR 41 148 -114 274 211 28 0 chr6 2048205 2048276 -187231278 + (TG)n Simple_repeat Simple_repeat 1 73 0 5943 151 27 78 chr6 2049515 2050815 -187228739 - L1MA4A LINE L1 -7 6296 5007 748 207 7 0 chr6 2050815 2050950 -187228604 - AluJo SINE Alu -176 136 1 5943 151 27 78 chr6 2050950 2051402 -187228152 - L1MA4A LINE L1 -1296 5007 4533 10349 202 41 25 chr6 2051422 2056935 -187222619 - L1PA4 LINE L1 -4 6853 1270 270 200 12 62 chr6 2057031 2057111 -187222443 + MER116 DNA Mariner 1 76 -4 220 209 0 0 chr6 2058310 2058353 -187221201 + (CA)n Simple_repeat Simple_repeat 2 44 0 267 234 124 16 chr6 2058770 2058962 -187220592 - MER112 DNA MER1_type 0 260 21 24 32 0 0 chr6 2060084 2060115 -187219439 + AT_rich Low_complexity Low_complexity 1 31 0 2549 50 0 3 chr6 2060653 2060953 -187218601 - AluY SINE Alu -12 299 1 1918 143 11 0 chr6 2061686 2061973 -187217581 - AluJo SINE Alu -22 290 1 219 241 103 46 chr6 2062032 2062119 -187217435 + MIR SINE MIR 57 148 -114 238 253 0 81 chr6 2064483 2064570 -187214984 + MIR SINE MIR 128 207 -55 234 294 43 33 chr6 2065122 2065214 -187214340 - L2 LINE L2 0 3313 3221 263 242 10 30 chr6 2065626 2065725 -187213829 + GA-rich Low_complexity Low_complexity 1 97 0 372 366 72 19 chr6 2065726 2065988 -187213566 - L1MEd LINE L1 -5382 737 462 467 353 30 15 chr6 2067585 2067786 -187211768 + L3 LINE CR1 946 1149 -428 1136 173 133 41 chr6 2067790 2068061 -187211493 + AluJb SINE Alu 6 301 -11 716 327 110 36 chr6 2070140 2070639 -187208915 + L3 LINE CR1 457 992 -585 441 330 121 35 chr6 2070678 2071051 -187208503 + L3 LINE CR1 1167 1571 -6 722 255 210 13 chr6 2071243 2071557 -187207997 + HsTC2 DNA Tc2 24 399 -1499 * 783 227 48 13 chr6 2071554 2071783 -187207771 + HsTC2 DNA Tc2 1664 1900 0 273 348 11 11 chr6 2071855 2071947 -187207607 - L3 LINE CR1 -4 1573 1482 304 255 131 48 chr6 2072151 2072296 -187207258 + L1M LINE L1 5257 5413 -2395 23 24 0 24 chr6 2074197 2074215 -187205339 + AT_rich Low_complexity Low_complexity 1 18 -22 2034 100 14 14 chr6 2074215 2074504 -187205050 - AluSx SINE Alu -23 289 1 23 24 0 24 chr6 2074504 2074526 -187205028 + AT_rich Low_complexity Low_complexity 18 40 0 324 206 0 184 chr6 2076108 2076244 -187203310 - MIR3 SINE MIR -9 199 89 189 154 0 0 chr6 2077453 2077492 -187202062 + A-rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr6 2079923 2079944 -187199610 + AT_rich Low_complexity Low_complexity 1 21 0 2543 62 0 0 chr6 2081049 2081355 -187198199 + AluY SINE Alu 3 308 -3 2302 111 0 0 chr6 2082727 2083033 -187196521 + AluSx SINE Alu 1 306 -6 23 33 0 0 chr6 2084512 2084542 -187195012 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr6 2084609 2084634 -187194920 + AT_rich Low_complexity Low_complexity 1 25 0 355 314 109 6 chr6 2085447 2085603 -187193951 - L2 LINE L2 -229 3084 2913 244 342 9 45 chr6 2085640 2085751 -187193803 - MIR SINE MIR -129 133 27 496 268 31 0 chr6 2088578 2088705 -187190849 + MER5A DNA MER1_type 1 131 -58 202 255 0 0 chr6 2089943 2089990 -187189564 + L2 LINE L2 3267 3313 0 246 32 0 0 chr6 2091095 2091126 -187188428 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 287 302 43 43 chr6 2092879 2093018 -187186536 + MIR3 SINE MIR 1 139 -69 25 0 0 0 chr6 2093211 2093236 -187186318 + AT_rich Low_complexity Low_complexity 1 25 0 426 268 167 26 chr6 2096259 2096456 -187183098 - MIR SINE MIR -3 259 32 682 256 21 10 chr6 2097117 2097326 -187182228 - MIR SINE MIR -41 221 12 327 274 260 7 chr6 2098371 2098517 -187181037 + MER5A DNA MER1_type 3 185 -4 238 290 81 16 chr6 2101144 2101206 -187178348 + MIR SINE MIR 23 88 -174 611 229 0 0 chr6 2101302 2101411 -187178143 + FLAM_C SINE Alu 1 109 -34 261 0 0 0 chr6 2101422 2101451 -187178103 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 730 161 8 0 chr6 2101456 2101574 -187177980 - FLAM_C SINE Alu -24 119 1 992 194 0 0 chr6 2101586 2101761 -187177793 + AluJb SINE Alu 129 303 -9 22 0 0 0 chr6 2102165 2102187 -187177367 + AT_rich Low_complexity Low_complexity 1 22 0 1933 140 10 0 chr6 2102776 2103076 -187176478 - AluSx SINE Alu -7 305 3 2154 119 3 3 chr6 2104317 2104611 -187174943 - AluSq SINE Alu -9 304 11 306 275 38 0 chr6 2104666 2104746 -187174808 - MIR SINE MIR -134 128 46 453 231 25 100 chr6 2106055 2106215 -187173339 - MIR3 SINE MIR -31 177 30 421 200 0 0 chr6 2107594 2107669 -187171885 + Tigger5 DNA MER2_type 5 79 -2244 287 194 83 28 chr6 2107671 2107743 -187171811 - Tigger5 DNA MER2_type -6 2317 2242 * 339 217 0 0 chr6 2107739 2107808 -187171746 + Tigger5 DNA MER2_type 2255 2323 0 624 249 82 27 chr6 2108116 2108325 -187171229 - MIR SINE MIR -4 258 42 454 283 108 28 chr6 2111022 2111234 -187168320 - MIR SINE MIR 0 262 34 26 30 0 0 chr6 2111311 2111344 -187168210 + AT_rich Low_complexity Low_complexity 1 33 0 297 0 0 0 chr6 2111742 2111775 -187167779 + (CAT)n Simple_repeat Simple_repeat 1 33 0 1944 152 61 7 chr6 2111832 2112034 -187167520 - Charlie5 DNA MER1_type 0 2624 2434 1460 164 126 7 chr6 2112034 2112344 -187167210 - MER7A DNA MER2_type 0 346 2 1944 152 61 7 chr6 2112344 2112581 -187166973 - Charlie5 DNA MER1_type -190 2434 2161 1310 169 60 70 chr6 2112581 2112883 -187166671 + AluJo SINE Alu 1 299 -13 1058 208 0 0 chr6 2112896 2113079 -187166475 + FRAM SINE Alu 1 176 0 3190 200 79 39 chr6 2113079 2113480 -187166074 - Charlie5 DNA MER1_type -454 2170 1787 2402 73 7 3 chr6 2113480 2113780 -187165774 - AluSp SINE Alu -12 301 1 3190 200 79 39 chr6 2113780 2114649 -187164905 - Charlie5 DNA MER1_type -837 1787 823 719 139 9 0 chr6 2114649 2114764 -187164790 + MSTB LTR MaLR 1 116 -310 559 174 74 0 chr6 2114752 2114873 -187164681 + MSTB LTR MaLR 299 428 -4 * 1160 217 170 28 chr6 2114877 2115210 -187164344 - Charlie5 DNA MER1_type -1797 827 543 904 158 0 0 chr6 2115210 2115356 -187164198 + L1PB3 LINE L1 6008 6153 -1 1160 217 170 28 chr6 2115356 2115665 -187163889 - Charlie5 DNA MER1_type -2081 543 15 735 275 54 0 chr6 2115674 2115896 -187163658 - MIR SINE MIR -27 235 2 1092 223 157 55 chr6 2116180 2116638 -187162916 + MLT1D LTR MaLR 1 505 0 254 29 29 0 chr6 2118012 2118047 -187161507 + (TC)n Simple_repeat Simple_repeat 2 37 0 2501 155 23 32 chr6 2118394 2118865 -187160689 + MLT1C LTR MaLR 1 467 0 217 271 51 0 chr6 2119186 2119245 -187160309 + L2 LINE L2 3138 3199 -73 198 0 0 0 chr6 2120048 2120070 -187159484 + (TTCA)n Simple_repeat Simple_repeat 4 25 0 315 283 126 25 chr6 2120212 2120371 -187159183 - MIR SINE MIR -37 225 51 1298 217 68 25 chr6 2120466 2120909 -187158645 - MER74B LTR ERVL -103 519 58 2135 108 0 11 chr6 2121399 2121716 -187157838 + AluSx SINE Alu 1 314 0 478 154 235 0 chr6 2121752 2121914 -187157640 - MER2 DNA MER2_type -26 319 120 498 180 30 0 chr6 2121914 2122014 -187157540 + FLAM_A SINE Alu 22 124 -18 542 184 149 0 chr6 2122014 2122128 -187157426 - MER2 DNA MER2_type -213 132 2 613 302 16 21 chr6 2122143 2122385 -187157169 + L1ME LINE L1 5336 5576 -586 213 310 0 0 chr6 2122665 2122723 -187156831 + MIR3 SINE MIR 149 206 -2 2202 115 3 0 chr6 2124554 2124866 -187154688 - AluSq SINE Alu 0 313 1 216 315 76 11 chr6 2125138 2125230 -187154324 - MIR3 SINE MIR -8 200 103 634 196 38 23 chr6 2126414 2126547 -187153007 + AluJo SINE Alu 1 135 -177 407 283 25 57 chr6 2126631 2126790 -187152764 + MIR3 SINE MIR 34 187 -21 21 57 0 19 chr6 2127195 2127212 -187152342 + AT_rich Low_complexity Low_complexity 1 17 -35 1534 91 55 0 chr6 2127212 2127466 -187152088 + L1MA2 LINE L1 6037 6304 0 21 57 0 19 chr6 2127466 2127501 -187152053 + AT_rich Low_complexity Low_complexity 17 52 0 192 283 0 19 chr6 2127610 2127663 -187151891 + MIR SINE MIR 69 120 -142 327 293 87 62 chr6 2128526 2128847 -187150707 + L1ME LINE L1 4259 4587 -1559 893 131 138 0 chr6 2129075 2129235 -187150319 + AluSq SINE Alu 132 313 0 567 299 83 56 chr6 2129251 2129877 -187149677 + L1ME LINE L1 4894 5547 -751 245 228 25 13 chr6 2129894 2129973 -187149581 + L1ME LINE L1 5612 5691 -430 22 35 0 0 chr6 2130300 2130329 -187149225 + AT_rich Low_complexity Low_complexity 1 29 0 225 65 0 0 chr6 2131010 2131041 -187148513 + (A)n Simple_repeat Simple_repeat 1 31 0 323 265 212 13 chr6 2133292 2133443 -187146111 - MER5A DNA MER1_type 0 189 9 513 180 18 81 chr6 2135342 2135453 -187144101 - Tigger2 DNA MER2_type -1 2717 2614 538 156 0 0 chr6 2135453 2135530 -187144024 - AluJ/FLAM SINE Alu -234 78 2 1392 81 113 57 chr6 2135531 2135653 -187143901 - Tigger2 DNA MER2_type -2456 262 148 2322 113 7 0 chr6 2135653 2135963 -187143591 - AluSx SINE Alu 0 312 1 1392 81 113 57 chr6 2135963 2136088 -187143466 - Tigger2 DNA MER2_type -2570 148 1 221 293 47 28 chr6 2136451 2136557 -187142997 - MIR SINE MIR -33 229 122 1419 151 98 19 chr6 2136711 2136976 -187142578 - AluJb SINE Alu -26 286 1 2240 97 7 0 chr6 2137165 2137455 -187142099 - AluY SINE Alu -19 292 1 191 265 191 0 chr6 2138347 2138415 -187141139 + MIR3 SINE MIR 15 95 -113 459 0 0 0 chr6 2138806 2138857 -187140697 + (CA)n Simple_repeat Simple_repeat 2 52 0 911 233 150 53 chr6 2139513 2139554 -187140000 - MLT2B1 LTR ERVL 0 520 484 216 67 0 0 chr6 2139554 2139584 -187139970 + (TG)n Simple_repeat Simple_repeat 1 30 0 911 233 150 53 chr6 2139584 2139881 -187139673 - MLT2B1 LTR ERVL -36 484 149 4208 201 55 7 chr6 2139910 2141335 -187138219 - ERVL-B1 LTR ERVL -4219 1545 2 1316 215 195 31 chr6 2141336 2141783 -187137771 - MLT2B1 LTR ERVL 0 520 1 231 254 37 74 chr6 2142018 2142207 -187137347 + L1MEd LINE L1 923 1104 -5015 228 230 144 58 chr6 2142520 2142659 -187136895 - MIR SINE MIR -26 236 86 234 293 29 71 chr6 2142702 2142842 -187136712 - MIR SINE MIR -69 193 60 191 304 54 22 chr6 2142878 2142970 -187136584 + MIR3 SINE MIR 95 189 -19 266 313 0 10 chr6 2143248 2143344 -187136210 + L2 LINE L2 1890 1984 -1330 203 346 0 39 chr6 2144014 2144092 -187135462 + L2 LINE L2 3238 3312 -1 1931 115 0 48 chr6 2145481 2145793 -187133761 + AluSx SINE Alu 11 307 -5 2380 96 3 0 chr6 2146068 2146380 -187133174 + AluSp SINE Alu 1 313 0 1884 180 0 3 chr6 2146490 2146795 -187132759 + AluJo SINE Alu 1 304 -8 2474 71 0 0 chr6 2146860 2147157 -187132397 + AluY SINE Alu 1 297 -14 480 186 72 0 chr6 2147470 2147567 -187131987 - MLT1A2 LTR MaLR -2 372 269 2313 79 0 7 chr6 2148557 2148849 -187130705 + AluSg1 SINE Alu 1 290 -19 345 264 138 75 chr6 2149040 2149388 -187130166 + L1MEd LINE L1 2659 3028 -3101 221 283 120 0 chr6 2150058 2150150 -187129404 - MIR SINE MIR -110 152 50 327 250 0 14 chr6 2150258 2150330 -187129224 - L2 LINE L2 -2 3311 3241 266 0 29 0 chr6 2150691 2150725 -187128829 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 2065 126 0 3 chr6 2150730 2151015 -187128539 - AluSx SINE Alu -28 284 1 269 183 95 103 chr6 2151932 2152058 -187127496 - MIR SINE MIR -4 258 134 233 128 43 0 chr6 2152058 2152105 -187127449 - MIR SINE MIR -98 164 116 22 0 0 0 chr6 2152347 2152369 -187127185 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 2152409 2152441 -187127113 + AT_rich Low_complexity Low_complexity 1 32 0 2253 206 7 0 chr6 2153501 2153937 -187125617 + L1PA16 LINE L1 3648 4086 -2060 3331 152 6 11 chr6 2153938 2154330 -187125224 + L1PA16 LINE L1 5649 6039 -127 2745 130 25 35 chr6 2154330 2154762 -187124792 - MSTA LTR MaLR 0 428 1 3331 152 6 11 chr6 2154762 2154889 -187124665 + L1PA16 LINE L1 6039 6165 -1 1387 209 49 57 chr6 2155497 2155865 -187123689 + MLT1A1 LTR MaLR 1 365 0 30 0 0 0 chr6 2156778 2156808 -187122746 + AT_rich Low_complexity Low_complexity 1 30 0 187 196 206 52 chr6 2156899 2156996 -187122558 - L3 LINE CR1 -884 693 582 2301 84 0 26 chr6 2157032 2157342 -187122212 + AluY SINE Alu 1 302 -9 1081 276 157 28 chr6 2157418 2157586 -187121968 + L2 LINE L2 2353 2498 -815 13768 136 50 45 chr6 2157586 2158867 -187120687 + Tigger1 DNA MER2_type 1 1300 -1118 1805 161 0 7 chr6 2158867 2159152 -187120402 - AluJb SINE Alu -27 285 3 13768 136 50 45 chr6 2159152 2160277 -187119277 + Tigger1 DNA MER2_type 1300 2418 0 1081 276 157 28 chr6 2160277 2160727 -187118827 + L2 LINE L2 2498 3056 -257 590 175 165 10 chr6 2160760 2160954 -187118600 - MER5C DNA MER1_type 0 324 101 468 226 0 21 chr6 2161105 2161198 -187118356 - L2 LINE L2 -38 3275 3185 283 178 89 0 chr6 2162032 2162107 -187117447 - MIR SINE MIR -65 197 115 23 68 0 0 chr6 2162127 2162171 -187117383 + AT_rich Low_complexity Low_complexity 1 44 0 284 346 19 56 chr6 2163679 2163877 -187115677 - MIR SINE MIR -51 211 19 298 281 133 31 chr6 2165587 2165715 -187113839 - MER5A DNA MER1_type -2 187 36 422 313 48 12 chr6 2166527 2166693 -187112861 - MIR SINE MIR -70 192 21 6332 187 84 71 chr6 2167522 2169106 -187110448 + MER52A LTR ERV1 46 1755 0 1462 285 114 9 chr6 2169177 2169808 -187109746 + MER20B DNA MER1_type 30 726 -57 2468 63 10 0 chr6 2169867 2170167 -187109387 - AluY SINE Alu -8 303 1 742 199 0 22 chr6 2171846 2171982 -187107572 + FLAM_C SINE Alu 1 133 0 30 0 0 0 chr6 2171983 2172013 -187107541 + AT_rich Low_complexity Low_complexity 1 30 0 303 323 81 37 chr6 2174068 2174229 -187105325 + MIR SINE MIR 13 180 -82 323 248 181 53 chr6 2175498 2175764 -187103790 + L2 LINE L2 2678 2977 -337 278 298 69 30 chr6 2175901 2176032 -187103522 + L2 LINE L2 3137 3272 0 606 273 207 19 chr6 2176211 2176530 -187103024 - L2 LINE L2 0 3313 2935 187 294 49 29 chr6 2177551 2177653 -187101901 - L2 LINE L2 -275 3038 2935 330 263 88 18 chr6 2180548 2180662 -187098892 - L2 LINE L2 -1 3271 3150 1086 219 35 0 chr6 2180664 2180865 -187098689 - MER3 DNA MER1_type 0 209 2 430 300 86 49 chr6 2181181 2181424 -187098130 - MIR SINE MIR 0 262 11 530 325 48 11 chr6 2181511 2181779 -187097775 + L2 LINE L2 2543 2820 -494 2358 92 3 0 chr6 2182123 2182418 -187097136 + AluSp SINE Alu 1 296 -17 626 210 150 18 chr6 2182783 2182950 -187096604 - MER5A DNA MER1_type 0 189 1 814 256 58 73 chr6 2183246 2183641 -187095913 - MLT1J LTR MaLR -86 425 37 329 140 0 0 chr6 2183781 2183831 -187095723 + L2 LINE L2 3223 3272 0 307 382 14 7 chr6 2184487 2184631 -187094923 - MIR3 SINE MIR -43 165 21 420 71 0 0 chr6 2185695 2185751 -187093803 + (CA)n Simple_repeat Simple_repeat 2 57 0 189 0 0 0 chr6 2185753 2185774 -187093780 + (TC)n Simple_repeat Simple_repeat 2 22 0 438 283 205 10 chr6 2186325 2186530 -187093024 + MIR SINE MIR 18 262 0 306 274 24 0 chr6 2186648 2186732 -187092822 + MLT1L LTR MaLR 191 276 -339 2054 133 148 13 chr6 2186942 2187319 -187092235 + MSTA LTR MaLR 1 428 0 198 0 0 0 chr6 2188854 2188876 -187090678 + (A)n Simple_repeat Simple_repeat 1 22 0 372 270 56 92 chr6 2189436 2189632 -187089922 + MIR SINE MIR 28 216 -46 1891 197 70 95 chr6 2190076 2190457 -187089097 + L1MC5 LINE L1 6738 7127 -834 1952 159 18 9 chr6 2190457 2190797 -187088757 - MER2 DNA MER2_type 0 344 2 1891 197 70 95 chr6 2190797 2190828 -187088726 + L1MC5 LINE L1 7127 7157 -804 769 204 0 0 chr6 2190828 2190960 -187088594 - FLAM_C SINE Alu 0 133 2 1891 197 70 95 chr6 2190960 2191383 -187088171 + L1MC5 LINE L1 7157 7515 -446 325 234 28 19 chr6 2191385 2191412 -187088142 + GA-rich Low_complexity Low_complexity 2 27 -82 1936 136 96 6 chr6 2191412 2191744 -187087810 - THE1B LTR MaLR -2 362 1 325 234 28 19 chr6 2191744 2191823 -187087731 + GA-rich Low_complexity Low_complexity 27 109 0 874 245 68 45 chr6 2191823 2192264 -187087290 + L1MC5 LINE L1 7475 7925 -36 492 214 0 0 chr6 2192729 2192818 -187086736 + FLAM_A SINE Alu 5 93 -49 22 94 0 0 chr6 2193494 2193558 -187085996 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr6 2194796 2194822 -187084732 + AT_rich Low_complexity Low_complexity 1 26 0 249 296 68 0 chr6 2194922 2195010 -187084544 - MIR SINE MIR -85 177 84 951 179 6 0 chr6 2195098 2195260 -187084294 + FRAM SINE Alu 1 163 -13 574 206 269 36 chr6 2195600 2195853 -187083701 - MER5C DNA MER1_type 0 324 13 268 109 0 43 chr6 2195965 2195977 -187083577 - MER46A DNA MER2_type -82 154 145 564 181 93 7 chr6 2195977 2196116 -187083438 + Tigger4(Zombi) DNA MER2_type 1 155 -2576 * 5242 139 17 15 chr6 2196110 2196978 -187082576 + Tigger4(Zombi) DNA MER2_type 1862 2731 0 1163 209 42 72 chr6 2197044 2197351 -187082203 + AluJo SINE Alu 4 301 -1 2434 59 0 26 chr6 2197531 2197834 -187081720 - AluY SINE Alu -16 295 1 1686 156 99 47 chr6 2198934 2199246 -187080308 + MLT2D LTR ERVL 8 302 -112 279 0 0 0 chr6 2199246 2199277 -187080277 + (CAAT)n Simple_repeat Simple_repeat 2 32 0 1686 156 99 47 chr6 2199277 2199296 -187080258 + MLT2D LTR ERVL 302 319 -95 198 103 0 0 chr6 2199296 2199325 -187080229 + (TA)n Simple_repeat Simple_repeat 1 29 0 1686 156 99 47 chr6 2199325 2199376 -187080178 + MLT2D LTR ERVL 319 411 -3 463 318 180 23 chr6 2199526 2200353 -187079201 - L2 LINE L2 -559 2755 1799 500 225 230 6 chr6 2200961 2201139 -187078415 - MIR SINE MIR 0 262 45 1801 158 0 34 chr6 2201184 2201505 -187078049 + AluJb SINE Alu 1 311 0 216 135 0 0 chr6 2202152 2202189 -187077365 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 297 235 42 42 chr6 2203188 2203307 -187076247 + L1ME4a LINE L1 6001 6119 -2 185 105 0 26 chr6 2203330 2203368 -187076186 + (TA)n Simple_repeat Simple_repeat 2 38 0 1584 166 34 48 chr6 2205436 2205731 -187073823 + AluJo SINE Alu 1 291 -21 1509 198 0 20 chr6 2207422 2207720 -187071834 + AluJb SINE Alu 1 292 -20 256 214 207 35 chr6 2208734 2208879 -187070675 - LTR67 LTR ERVL -25 532 363 670 194 29 24 chr6 2209088 2209258 -187070296 + L1MB5 LINE L1 5941 6111 -63 874 206 75 20 chr6 2209531 2209684 -187069870 - MER58A DNA MER1_type -2207 213 45 1955 138 0 16 chr6 2209684 2209989 -187069565 + AluSx SINE Alu 1 300 -12 874 206 75 20 chr6 2209989 2210034 -187069520 - MER58A DNA MER1_type -2375 45 4 384 181 181 0 chr6 2210132 2210226 -187069328 - L2 LINE L2 -6 3307 3197 2125 82 0 4 chr6 2210511 2210778 -187068776 + AluSq SINE Alu 40 305 -8 2308 77 3 0 chr6 2211011 2211296 -187068258 + AluSp SINE Alu 22 307 -6 1518 196 26 22 chr6 2211670 2211981 -187067573 + AluJo SINE Alu 1 312 0 1808 227 57 41 chr6 2212051 2212562 -187066992 + LTR40a LTR ERVL 1 519 0 2307 106 0 0 chr6 2213666 2213968 -187065586 - AluSx SINE Alu -10 302 1 1288 146 77 49 chr6 2214252 2214498 -187065056 + AluJo SINE Alu 1 253 -59 484 111 81 0 chr6 2214900 2214999 -187064555 + L1MA5 LINE L1 6194 6300 0 2158 113 7 10 chr6 2215191 2215492 -187064062 + AluSx SINE Alu 1 300 -12 2281 78 0 45 chr6 2215834 2216143 -187063411 - AluY SINE Alu -16 295 1 987 154 13 0 chr6 2216620 2216776 -187062778 + AluSg/x SINE Alu 153 310 0 269 233 0 0 chr6 2216830 2216890 -187062664 + MIR SINE MIR 200 259 -3 1305 223 18 24 chr6 2217015 2217343 -187062211 + MSTB1-int LTR MaLR 471 796 -855 977 147 73 82 chr6 2217365 2217597 -187061957 + MSTB1-int LTR MaLR 1422 1651 0 2476 138 58 10 chr6 2217597 2218009 -187061545 + MSTB1 LTR MaLR 1 432 0 335 271 231 5 chr6 2218807 2219010 -187060544 + MIR SINE MIR 4 252 -10 1728 158 3 37 chr6 2219990 2220312 -187059242 - AluJo SINE Alu -1 311 1 491 247 140 5 chr6 2220349 2220535 -187059019 + MIR SINE MIR 51 261 -1 24 0 0 0 chr6 2221433 2221457 -187058097 + GC_rich Low_complexity Low_complexity 1 24 0 2434 76 0 3 chr6 2223096 2223397 -187056157 + AluSq SINE Alu 1 300 -13 1617 172 151 9 chr6 2223670 2224001 -187055553 - MLT1B LTR MaLR -10 380 3 1123 167 44 0 chr6 2224232 2224436 -187055118 + MER20 DNA MER1_type 6 218 -1 4318 181 35 27 chr6 2225090 2225929 -187053625 + MER21B LTR ERV1 10 854 -9 289 320 17 3 chr6 2225938 2226075 -187053479 - MIR SINE MIR -62 146 18 590 182 172 35 chr6 2226416 2226619 -187052935 - L1MD2 LINE L1 -11 6348 6118 1350 187 97 0 chr6 2226626 2226894 -187052660 - AluJb SINE Alu -18 294 1 822 151 0 22 chr6 2226901 2227040 -187052514 - AluJo SINE Alu -176 136 1 2039 189 72 72 chr6 2227040 2227232 -187052322 - L1MD2 LINE L1 -226 6133 5942 1637 181 29 0 chr6 2227232 2227508 -187052046 + AluJo SINE Alu 1 284 -28 2039 189 72 72 chr6 2227508 2227635 -187051919 - L1MD2 LINE L1 -417 5942 5816 2141 101 3 3 chr6 2227635 2227922 -187051632 - AluSx SINE Alu -25 287 1 712 268 60 40 chr6 2227922 2228172 -187051382 - L1MB8 LINE L1 -353 5825 5571 2039 189 72 72 chr6 2227922 2228140 -187051414 - L1MD2 LINE L1 -542 5817 5595 271 221 13 26 chr6 2228195 2228272 -187051282 + LTR33A LTR ERVL 446 521 -2 222 37 0 0 chr6 2228410 2228437 -187051117 + (T)n Simple_repeat Simple_repeat 1 27 0 2410 90 0 3 chr6 2228678 2228979 -187050575 - AluSp SINE Alu -13 300 1 1157 134 0 0 chr6 2229290 2229461 -187050093 - AluSx SINE Alu -4 306 136 572 114 0 0 chr6 2229461 2229540 -187050014 - AluSx SINE Alu -228 84 6 213 132 0 0 chr6 2229555 2229593 -187049961 + (T)n Simple_repeat Simple_repeat 1 38 0 438 276 0 24 chr6 2230824 2230951 -187048603 + MLT1L LTR MaLR 127 250 -365 1390 246 57 38 chr6 2231065 2231553 -187048001 - MLT1H1 LTR MaLR -83 472 7 1845 245 39 11 chr6 2231614 2232125 -187047429 - MLT1E LTR MaLR 0 593 1 773 232 40 119 chr6 2232140 2232648 -187046906 - MLT1H1 LTR MaLR -34 521 71 2557 77 3 0 chr6 2232867 2233179 -187046375 + AluSp SINE Alu 1 313 0 478 281 88 11 chr6 2233338 2233555 -187045999 + MLT1L LTR MaLR 263 605 -10 225 0 0 0 chr6 2233819 2233844 -187045710 + (T)n Simple_repeat Simple_repeat 1 25 0 960 186 155 75 chr6 2233865 2234214 -187045340 + MSTD LTR MaLR 1 377 -19 414 0 0 0 chr6 2234214 2234260 -187045294 + (CA)n Simple_repeat Simple_repeat 1 46 0 1885 216 42 13 chr6 2234427 2234881 -187044673 - MLT1C LTR MaLR 0 467 1 530 268 82 41 chr6 2235097 2235317 -187044237 - MIR SINE MIR -14 248 20 647 309 62 9 chr6 2235406 2235726 -187043828 - L1MC/D LINE L1 -2217 5591 5255 667 178 45 45 chr6 2235867 2236024 -187043530 - FRAM SINE Alu -5 161 5 1145 161 75 54 chr6 2236024 2236169 -187043385 - AluJo SINE Alu 0 312 12 2284 118 0 7 chr6 2236462 2236766 -187042788 - AluSx SINE Alu -10 302 1 25 31 0 0 chr6 2237245 2237277 -187042277 + AT_rich Low_complexity Low_complexity 1 32 0 5877 195 30 23 chr6 2237280 2238628 -187040926 - L1MC1 LINE L1 0 6333 4957 231 36 0 0 chr6 2238628 2238656 -187040898 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5877 195 30 23 chr6 2238656 2239881 -187039673 - L1MC1 LINE L1 -1376 4957 3742 619 222 15 0 chr6 2240077 2240212 -187039342 - MLT1G1 LTR MaLR 0 595 459 336 265 185 31 chr6 2240221 2240462 -187039092 - MLT1G1 LTR MaLR -196 346 98 * 896 211 5 0 chr6 2240459 2240644 -187038910 + MLT1B LTR MaLR 205 390 0 1115 189 110 8 chr6 2241492 2241756 -187037798 - MER21B LTR ERV1 -554 309 19 347 279 0 0 chr6 2241779 2241858 -187037696 - MER21B LTR ERV1 -773 90 12 22 0 0 0 chr6 2242761 2242783 -187036771 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr6 2242956 2242979 -187036575 + (A)n Simple_repeat Simple_repeat 1 23 0 283 169 17 51 chr6 2243500 2243559 -187035995 - L2 LINE L2 0 3313 3257 22 0 0 0 chr6 2244601 2244623 -187034931 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 2244797 2244818 -187034736 + (A)n Simple_repeat Simple_repeat 1 21 0 283 169 17 51 chr6 2245339 2245398 -187034156 - L2 LINE L2 0 3313 3257 605 92 0 0 chr6 2245605 2245681 -187033873 + AluSq/x SINE Alu 36 111 -201 1676 266 246 5 chr6 2245730 2246217 -187033337 - L2 LINE L2 -1937 1377 1009 342 0 0 0 chr6 2246217 2246255 -187033299 + (TG)n Simple_repeat Simple_repeat 2 39 0 1676 266 246 5 chr6 2246255 2246659 -187032895 - L2 LINE L2 -2305 1009 271 372 177 42 186 chr6 2246663 2246878 -187032676 - MER5A DNA MER1_type -1 188 5 566 234 64 0 chr6 2246881 2247022 -187032532 + MER33 DNA MER1_type 8 157 -167 1490 158 12 12 chr6 2247029 2247275 -187032279 + AluJo SINE Alu 5 250 -62 1393 192 38 23 chr6 2247295 2247639 -187031915 - MLT1A1 LTR MaLR -11 354 6 1937 156 0 14 chr6 2247658 2247946 -187031608 - AluJo SINE Alu -28 284 1 379 187 73 0 chr6 2247947 2248070 -187031484 + MER33 DNA MER1_type 165 296 -28 250 299 133 14 chr6 2248120 2248331 -187031223 - L2 LINE L2 -3037 277 42 661 229 16 0 chr6 2248332 2248515 -187031039 - MER114 LTR ERV -447 201 16 4896 135 19 37 chr6 2248610 2249497 -187030057 - MER4D LTR ERV1 0 872 2 505 279 31 12 chr6 2249922 2250083 -187029471 + MER41C LTR ERV1 1 164 -390 349 216 14 0 chr6 2250074 2250148 -187029406 + MER41D LTR ERV1 483 557 0 * 1147 168 0 0 chr6 2251704 2251877 -187027677 + FAM SINE Alu 1 173 -2 831 201 0 12 chr6 2253242 2253406 -187026148 + MER5B DNA MER1_type 17 178 0 557 243 18 41 chr6 2254165 2254393 -187025161 + L1ME2 LINE L1 5941 6166 0 270 255 38 19 chr6 2254502 2254608 -187024946 + L1MC4 LINE L1 7924 8031 -11 410 280 49 7 chr6 2254785 2254928 -187024626 - MIR SINE MIR -2 260 112 198 0 0 0 chr6 2255004 2255026 -187024528 + (T)n Simple_repeat Simple_repeat 1 22 0 302 143 0 20 chr6 2255026 2255075 -187024479 - MER5B DNA MER1_type -114 64 17 21 0 0 0 chr6 2255214 2255235 -187024319 + AT_rich Low_complexity Low_complexity 1 21 0 212 59 29 0 chr6 2255270 2255304 -187024250 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2109 75 0 0 chr6 2255306 2255560 -187023994 - AluY SINE Alu -31 280 27 2380 101 0 0 chr6 2255560 2255864 -187023690 - AluSx SINE Alu -6 306 1 2137 117 7 0 chr6 2255992 2256282 -187023272 - AluSx SINE Alu -20 292 1 7878 165 14 23 chr6 2256284 2256716 -187022838 - L1MA9 LINE L1 -61 6251 5817 2438 68 0 0 chr6 2256716 2257011 -187022543 - AluY SINE Alu 0 311 17 7878 165 14 23 chr6 2257011 2259123 -187020431 - L1MA9 LINE L1 -495 5817 3728 873 364 35 33 chr6 2260511 2261053 -187018501 - L2 LINE L2 -30 3242 2695 1823 140 3 56 chr6 2261059 2261207 -187018347 + AluSx SINE Alu 1 124 -188 2352 92 10 0 chr6 2261207 2261512 -187018042 + AluSp SINE Alu 1 308 -5 1823 140 3 56 chr6 2261512 2261684 -187017870 + AluSx SINE Alu 124 304 -8 23 0 0 0 chr6 2261758 2261781 -187017773 + AT_rich Low_complexity Low_complexity 1 23 0 707 266 104 70 chr6 2262425 2262861 -187016693 + L1MEc LINE L1 789 1209 -5187 2225 128 10 49 chr6 2262861 2263251 -187016303 - THE1C LTR MaLR 0 375 1 707 266 104 70 chr6 2263251 2263541 -187016013 + L1MEc LINE L1 1209 1557 -4839 705 197 31 0 chr6 2263541 2263668 -187015886 + FLAM_A SINE Alu 1 131 -2 707 266 104 70 chr6 2263668 2263882 -187015672 + L1MEc LINE L1 1557 1762 -4634 889 274 133 9 chr6 2263993 2264642 -187014912 + L1MEc LINE L1 3198 3926 -2289 30032 107 14 59 chr6 2264648 2271094 -187008460 + L1PA7 LINE L1 12 6153 -1 5625 143 35 14 chr6 2271216 2272579 -187006975 + L1PB3 LINE L1 4186 5518 -705 1992 146 9 25 chr6 2272579 2272894 -187006660 - AluJo SINE Alu -2 310 1 5625 143 35 14 chr6 2272894 2272987 -187006567 + L1PB3 LINE L1 5518 5607 -616 1620 149 16 68 chr6 2272987 2273308 -187006246 + AluJb SINE Alu 3 306 -6 5625 143 35 14 chr6 2273308 2273851 -187005703 + L1PB3 LINE L1 5607 6223 0 1646 248 139 16 chr6 2273885 2274774 -187004780 + L1M4 LINE L1 4268 5266 -880 186 43 0 0 chr6 2275382 2275405 -187004149 + (T)n Simple_repeat Simple_repeat 1 23 0 1844 146 45 3 chr6 2275722 2276058 -187003496 - LTR35 LTR ERV1 0 618 269 1079 97 11 17 chr6 2276058 2276233 -187003321 + THE1C-int LTR MaLR 1407 1580 0 2074 102 6 42 chr6 2276233 2276594 -187002960 + THE1C LTR MaLR 1 431 -26 1975 195 103 55 chr6 2276654 2277171 -187002383 + MER31-int LTR ERV1 3266 3757 -2512 2232 148 13 82 chr6 2277171 2277624 -187001930 - MER61B LTR ERV1 -3 422 1 1975 195 103 55 chr6 2277624 2277651 -187001903 + MER31-int LTR ERV1 3757 5132 -1137 1289 150 0 162 chr6 2277651 2278010 -187001544 + AluSx SINE Alu 6 306 -6 871 164 26 9 chr6 2278018 2278194 -187001360 + MER31-int LTR ERV1 3861 4010 -926 18261 62 3 22 chr6 2278234 2281420 -186998134 + L1PA6 LINE L1 2974 6154 0 22863 74 3 5 chr6 2281425 2284486 -186995068 + HERVL-A1 LTR ERVL 1564 4617 -1037 19538 65 20 12 chr6 2284590 2289119 -186990435 - Harlequin LTR ERV1 -1684 5212 575 447 35 0 0 chr6 2289219 2289277 -186990277 + HERVL-A1 LTR ERVL 5597 5654 0 3112 68 57 9 chr6 2289277 2289660 -186989894 + MLT2A1 LTR ERVL 1 407 -37 243 0 0 0 chr6 2289660 2289687 -186989867 + (TA)n Simple_repeat Simple_repeat 1 27 0 3112 68 57 9 chr6 2289687 2289727 -186989827 + MLT2A1 LTR ERVL 407 444 0 753 221 111 23 chr6 2291571 2291587 -186987967 + MLT1J LTR MaLR 217 230 -281 2428 102 0 3 chr6 2291587 2291901 -186987653 - AluSq SINE Alu 0 313 1 753 221 111 23 chr6 2291901 2292101 -186987453 + MLT1J LTR MaLR 230 452 -59 499 224 48 20 chr6 2292192 2292328 -186987226 + MLT1A1 LTR MaLR 1 140 -225 1367 148 4 13 chr6 2292328 2292565 -186986989 - MER21B LTR ERV1 0 863 629 1812 166 73 34 chr6 2292565 2293005 -186986549 - LTR2B LTR ERV1 0 490 34 42163 62 24 18 chr6 2293019 2299805 -186979749 - Harlequin LTR ERV1 0 6896 1 1804 184 84 32 chr6 2299805 2300267 -186979287 - LTR2B LTR ERV1 0 490 5 * 3251 171 57 11 chr6 2300256 2300290 -186979264 - MER21B LTR ERV1 -225 638 607 207 0 0 0 chr6 2300290 2300313 -186979241 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3251 171 57 11 chr6 2300313 2300888 -186978666 - MER21B LTR ERV1 -256 607 1 2115 170 30 25 chr6 2300973 2301409 -186978145 - MER21B-int LTR ERV1 -55 4136 3699 2113 184 100 107 chr6 2301413 2302250 -186977304 - LTR28 LTR ERV1 0 1020 109 400 239 254 0 chr6 2302262 2302404 -186977150 - LTR28 LTR ERV1 -842 178 1 3009 165 79 2 chr6 2302404 2302985 -186976569 - MER21B-int LTR ERV1 -494 3697 3072 9055 210 39 30 chr6 2303427 2305150 -186974404 - L1M4c LINE L1 -1167 5215 3509 2335 119 3 0 chr6 2305150 2305461 -186974093 - AluSx SINE Alu 0 312 1 9055 210 39 30 chr6 2305461 2306092 -186973462 - L1M4c LINE L1 -2873 3509 2885 2092 149 126 5 chr6 2306092 2306474 -186973080 + MSTA LTR MaLR 1 428 0 8941 177 29 1 chr6 2306474 2308080 -186971474 + MSTA-int LTR MaLR 1 1651 0 2046 147 126 11 chr6 2308080 2308462 -186971092 + MSTA LTR MaLR 1 426 -2 9055 210 39 30 chr6 2308462 2308826 -186970728 - L1M4c LINE L1 -3496 2886 2470 916 234 60 22 chr6 2308847 2309095 -186970459 - L1M4c LINE L1 -3916 2468 2231 500 30 0 15 chr6 2309095 2309162 -186970392 + (TA)n Simple_repeat Simple_repeat 2 67 0 2231 101 7 13 chr6 2309162 2309460 -186970094 - AluSp SINE Alu -17 296 1 916 234 60 22 chr6 2309460 2309574 -186969980 - L1M4c LINE L1 -4152 2232 2091 1831 258 30 25 chr6 2309744 2310387 -186969167 - L1M4c LINE L1 -4663 1721 1076 371 98 16 0 chr6 2310415 2310476 -186969078 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1972 158 10 0 chr6 2310476 2310780 -186968774 - AluSx SINE Alu -5 307 1 843 275 48 3 chr6 2310788 2310990 -186968564 - L1 LINE L1 -4813 1840 1616 267 31 0 0 chr6 2310990 2311022 -186968532 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 843 275 48 3 chr6 2311022 2311154 -186968400 - L1 LINE L1 -5037 1616 1491 246 345 11 0 chr6 2311433 2311520 -186968034 - L1 LINE L1 -5219 1434 1347 285 200 0 0 chr6 2312031 2312091 -186967463 + L1MC5 LINE L1 7345 7404 -557 891 234 10 5 chr6 2312399 2312608 -186966946 - MLT1C LTR MaLR 0 467 258 735 226 14 14 chr6 2312643 2312825 -186966729 - FRAM SINE Alu 0 182 1 1844 160 49 0 chr6 2312837 2313153 -186966401 - AluSx SINE Alu 0 312 6 662 218 71 0 chr6 2313157 2313327 -186966227 - MLT1C LTR MaLR -285 182 1 1586 111 0 5 chr6 2313420 2313627 -186965927 + AluSg/x SINE Alu 95 300 -10 1305 217 41 77 chr6 2314380 2314823 -186964731 + L1ME2 LINE L1 5555 5981 -183 311 143 32 0 chr6 2314873 2314936 -186964618 - L1PA13 LINE L1 0 6163 6099 378 295 75 20 chr6 2315428 2315723 -186963831 + L1MEd LINE L1 981 1291 -4914 234 207 207 11 chr6 2315890 2315977 -186963577 + HAL1 LINE L1 1500 1603 -904 1698 171 24 20 chr6 2316082 2316187 -186963367 + AluJo SINE Alu 6 109 -203 2142 129 36 38 chr6 2316187 2316552 -186963002 - THE1B LTR MaLR 0 364 1 1698 171 24 20 chr6 2316552 2316738 -186962816 + AluJo SINE Alu 109 298 -14 1564 173 32 160 chr6 2316993 2317554 -186962000 + LTR45B LTR ERV1 1 489 0 2409 95 0 0 chr6 2317603 2317950 -186961604 + L1PB1 LINE L1 5624 5970 -181 942 112 0 0 chr6 2317950 2318075 -186961479 + AluSq/x SINE Alu 1 125 -188 1247 116 5 11 chr6 2318081 2318270 -186961284 + L1PB1 LINE L1 5959 6146 -5 281 216 14 0 chr6 2318386 2318460 -186961094 - Charlie1 DNA MER1_type -506 2255 2181 390 245 73 55 chr6 2318508 2318835 -186960719 + L1MEd LINE L1 2120 2452 -3944 1208 149 6 0 chr6 2318847 2319022 -186960532 + AluSx SINE Alu 1 176 -136 619 224 22 22 chr6 2319047 2319230 -186960324 + L1ME3A LINE L1 5774 5956 -214 339 272 0 0 chr6 2319393 2319518 -186960036 + (TA)n Simple_repeat Simple_repeat 1 125 0 2334 160 54 69 chr6 2319521 2320116 -186959438 + L1MA5A LINE L1 1416 2001 -4788 576 187 0 0 chr6 2320117 2320240 -186959314 + GA-rich Low_complexity Low_complexity 3 125 0 2242 233 19 4 chr6 2320240 2320827 -186958727 + L1MA5A LINE L1 1987 2572 -4217 2350 88 109 21 chr6 2320828 2321214 -186958340 - MER4A LTR ERV1 0 664 245 8153 197 16 26 chr6 2321249 2321974 -186957580 + L1MA5A LINE L1 3388 4119 -2669 1978 132 0 7 chr6 2321974 2322246 -186957308 + AluSg SINE Alu 1 270 -40 8153 197 16 26 chr6 2322246 2323517 -186956037 + L1MA5A LINE L1 4119 5362 -1426 1523 195 85 13 chr6 2324672 2325061 -186954493 + L1MA5A LINE L1 5344 5760 -1028 732 74 11 0 chr6 2325066 2325161 -186954393 - AluSg/x SINE Alu -102 208 113 3819 126 23 16 chr6 2325284 2325363 -186954191 + L1MA5A LINE L1 5898 5975 -964 2166 135 0 0 chr6 2325363 2325659 -186953895 + AluSx SINE Alu 1 296 -16 3819 126 23 16 chr6 2325659 2326112 -186953442 + L1MA5A LINE L1 5975 6439 -500 432 0 0 0 chr6 2326112 2326160 -186953394 + (CA)n Simple_repeat Simple_repeat 2 49 0 3819 126 23 16 chr6 2326160 2326310 -186953244 + L1MA5A LINE L1 6439 6586 -353 373 75 25 88 chr6 2326306 2326328 -186953226 - L1MB4 LINE L1 -77 6103 6081 * 514 99 0 25 chr6 2326328 2326409 -186953145 - MADE1 DNA Mariner 0 80 2 373 75 25 88 chr6 2326409 2326466 -186953088 - L1MB4 LINE L1 -99 6081 6029 243 241 25 51 chr6 2326569 2326648 -186952906 - L2 LINE L2 0 3313 3237 * 292 243 14 0 chr6 2326645 2326715 -186952839 - MIR SINE MIR -3 259 189 270 244 38 28 chr6 2327276 2327394 -186952160 + MER5A DNA MER1_type 1 181 -8 2336 95 3 13 chr6 2327574 2327890 -186951664 - AluSq SINE Alu 0 313 1 300 247 54 11 chr6 2327902 2327995 -186951559 + MER58C DNA MER1_type 119 215 0 356 231 8 45 chr6 2328371 2328505 -186951049 - L1MC/D LINE L1 -2006 5802 5674 1866 157 11 55 chr6 2329080 2329122 -186950432 + MER89 LTR ERV1 195 237 -322 1800 140 11 18 chr6 2329122 2329407 -186950147 - AluJb SINE Alu -19 293 11 1866 157 11 55 chr6 2329407 2329746 -186949808 + MER89 LTR ERV1 237 559 0 428 167 78 29 chr6 2330038 2330140 -186949414 + MER89-int LTR ERV1 444 550 -6251 317 239 0 0 chr6 2330146 2330217 -186949337 + MER89-int LTR ERV1 520 590 -6211 * 1062 241 96 21 chr6 2330208 2330582 -186948972 + MER89-int LTR ERV1 878 1279 -5522 645 175 0 0 chr6 2330582 2330685 -186948869 + FLAM_C SINE Alu 16 118 -25 1042 212 8 115 chr6 2330711 2331112 -186948442 + MER89-int LTR ERV1 1274 1631 -5170 1832 248 77 64 chr6 2331177 2331946 -186947608 + MER89-int LTR ERV1 1650 2428 -4373 4149 143 18 28 chr6 2332237 2332493 -186947061 - L1PA16 LINE L1 0 6166 5909 1903 147 0 39 chr6 2332493 2332805 -186946749 + AluJb SINE Alu 1 300 -12 4149 143 18 28 chr6 2332805 2332947 -186946607 - L1PA16 LINE L1 -257 5909 5767 2172 75 3 10 chr6 2332947 2333263 -186946291 - AluY SINE Alu 0 311 1 4149 143 18 28 chr6 2333263 2333677 -186945877 - L1PA16 LINE L1 -399 5767 5361 509 229 9 9 chr6 2334670 2334788 -186944766 + MIR3 SINE MIR 69 187 -21 25 31 0 0 chr6 2335185 2335217 -186944337 + AT_rich Low_complexity Low_complexity 1 32 0 910 121 7 0 chr6 2335229 2335378 -186944176 + L1MA5A LINE L1 6146 6295 -2 487 224 74 20 chr6 2335831 2336022 -186943532 + MER58 DNA MER1_type 5 2417 -3 855 115 0 39 chr6 2338002 2338132 -186941422 - FLAM_C SINE Alu -7 126 2 2643 43 0 0 chr6 2338142 2338443 -186941111 - AluY SINE Alu -10 301 1 245 272 101 32 chr6 2338862 2339020 -186940534 + L2 LINE L2 2537 2705 -609 4431 162 34 28 chr6 2339022 2339067 -186940487 - L1MB4 LINE L1 -6 6174 6131 2400 92 0 3 chr6 2339067 2339373 -186940181 - AluSx SINE Alu -7 305 1 4431 162 34 28 chr6 2339373 2340221 -186939333 - L1MB4 LINE L1 -49 6131 5276 276 186 0 0 chr6 2340474 2340517 -186939037 - Alu SINE Alu -264 44 2 45 19 0 0 chr6 2391014 2391066 -186888488 + AT_rich Low_complexity Low_complexity 1 52 0 2725 18 16 0 chr6 2391066 2391466 -186888088 - L1PA4 LINE L1 -677 5478 5075 5972 21 6 0 chr6 2391466 2392144 -186887410 + L1PA4 LINE L1 5472 6154 -1 40 0 0 0 chr6 2392173 2392213 -186887341 + AT_rich Low_complexity Low_complexity 1 40 0 1051 260 9 0 chr6 2392445 2392664 -186886890 + MER58A DNA MER1_type 4 224 0 1143 158 164 75 chr6 2392913 2393248 -186886306 + MLT1A1 LTR MaLR 1 365 0 243 331 7 44 chr6 2393379 2393515 -186886039 - L2 LINE L2 -213 3059 2929 271 272 163 34 chr6 2394334 2394481 -186885073 + MIR3 SINE MIR 32 197 -11 356 211 56 7 chr6 2395514 2395656 -186883898 + (CA)n Simple_repeat Simple_repeat 2 150 0 327 131 54 15 chr6 2395695 2395825 -186883729 + (CA)n Simple_repeat Simple_repeat 2 136 0 473 208 46 17 chr6 2395867 2396040 -186883514 + (CA)n Simple_repeat Simple_repeat 2 179 0 1130 191 106 25 chr6 2396978 2397260 -186882294 - MER2 DNA MER2_type -28 317 13 425 198 10 0 chr6 2397560 2397661 -186881893 + GA-rich Low_complexity Low_complexity 3 104 0 305 198 293 0 chr6 2397661 2397777 -186881777 + MER103 DNA DNA 1 150 -16 207 0 0 0 chr6 2398780 2398803 -186880751 + (A)n Simple_repeat Simple_repeat 1 23 0 25 0 0 0 chr6 2399042 2399067 -186880487 + AT_rich Low_complexity Low_complexity 1 25 0 207 301 186 9 chr6 2399179 2399292 -186880262 + MIR3 SINE MIR 9 141 -67 343 309 32 0 chr6 2399763 2399889 -186879665 + L2 LINE L2 3182 3311 -2 2370 85 0 0 chr6 2400434 2400729 -186878825 + AluSc SINE Alu 1 295 -14 2228 122 0 6 chr6 2401075 2401386 -186878168 + AluSx SINE Alu 3 311 -1 1431 45 6 0 chr6 2403212 2403390 -186876164 - L1PA4 LINE L1 -3 6152 5974 392 171 14 0 chr6 2403634 2403704 -186875850 - MER82 DNA MER2_type 0 653 583 720 79 0 0 chr6 2403705 2403794 -186875760 - AluSq/x SINE Alu -204 109 21 555 107 19 10 chr6 2406275 2406285 -186873269 + (TCTA)n Simple_repeat Simple_repeat 1 9 -95 1422 224 120 41 chr6 2406285 2406750 -186872804 + MLT1D LTR MaLR 1 502 -3 555 107 19 10 chr6 2406750 2406842 -186872712 + (TCTA)n Simple_repeat Simple_repeat 9 104 0 2061 125 37 28 chr6 2406844 2407171 -186872383 + THE1B LTR MaLR 1 330 -34 396 271 13 12 chr6 2408401 2408720 -186870834 + (CA)n Simple_repeat Simple_repeat 1 319 0 257 251 0 123 chr6 2408900 2409071 -186870483 + MLT1K LTR MaLR 277 426 -162 211 200 0 0 chr6 2409085 2409120 -186870434 + polypurine Low_complexity Low_complexity 2 36 0 310 260 20 30 chr6 2409149 2409249 -186870305 + MLT1K LTR MaLR 472 570 -18 379 227 85 102 chr6 2409453 2409629 -186869925 - L2 LINE L2 -2 3311 3139 519 234 65 13 chr6 2409631 2409785 -186869769 + L1M4 LINE L1 5604 5765 -419 779 101 8 39 chr6 2410430 2410559 -186868995 - L1PA8 LINE L1 -1 6171 6047 190 270 90 45 chr6 2410656 2410767 -186868787 + L2 LINE L2 2928 3043 -229 313 294 87 0 chr6 2411255 2411381 -186868173 + L2 LINE L2 3136 3272 0 1954 141 77 0 chr6 2412274 2412587 -186866967 - MER1B DNA MER1_type 0 337 1 537 214 151 13 chr6 2412716 2412875 -186866679 + MER5A DNA MER1_type 4 184 -5 394 278 51 40 chr6 2412924 2413100 -186866454 + MIR SINE MIR 49 226 -36 277 293 281 0 chr6 2414904 2415071 -186864483 - MIR SINE MIR 0 262 49 243 259 214 0 chr6 2416173 2416304 -186863250 + MIR SINE MIR 48 206 -56 312 241 50 78 chr6 2417404 2417545 -186862009 - L2 LINE L2 0 3272 3136 332 310 120 0 chr6 2418308 2418408 -186861146 + MER81 DNA DNA 1 112 -2 252 288 91 0 chr6 2418428 2418560 -186860994 - MIR SINE MIR -62 200 57 1184 178 45 29 chr6 2418588 2418830 -186860724 - MLT1F1 LTR MaLR 0 567 322 15336 122 37 10 chr6 2419031 2419792 -186859762 + Tigger1 DNA MER2_type 1 740 -1678 2323 156 62 5 chr6 2419792 2420195 -186859359 - MSTB LTR MaLR 0 426 1 15336 122 37 10 chr6 2420195 2421786 -186857768 + Tigger1 DNA MER2_type 740 2418 0 2313 97 0 7 chr6 2421822 2422122 -186857432 + AluSx SINE Alu 1 298 -14 24 32 0 0 chr6 2422333 2422364 -186857190 + AT_rich Low_complexity Low_complexity 1 31 0 269 272 7 66 chr6 2422691 2422834 -186856720 + MIR SINE MIR 92 221 -41 205 176 0 20 chr6 2423549 2423600 -186855954 + L2 LINE L2 2228 2277 -1037 757 214 12 24 chr6 2423601 2423769 -186855785 + MER63B DNA MER1_type 2 167 -269 868 298 96 51 chr6 2423807 2424419 -186855135 + L2 LINE L2 2307 2953 -319 2135 119 0 0 chr6 2424419 2424712 -186854842 - AluSx SINE Alu -15 297 5 868 298 96 51 chr6 2424712 2424789 -186854765 + L2 LINE L2 2953 3025 -247 793 281 30 20 chr6 2424832 2425129 -186854425 - L1M3 LINE L1 -606 5577 5275 2116 107 78 29 chr6 2425129 2425476 -186854078 - THE1B LTR MaLR 0 364 1 793 281 30 20 chr6 2425476 2425602 -186853952 - L1M3 LINE L1 -908 5275 5152 793 251 121 57 chr6 2425673 2426374 -186853180 - L1MEd LINE L1 -4722 1588 820 1431 196 31 14 chr6 2426374 2426665 -186852889 + AluJo SINE Alu 1 296 -16 793 251 121 57 chr6 2426665 2426712 -186852842 - L1MEd LINE L1 -5490 820 777 507 17 0 0 chr6 2426727 2426787 -186852767 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 300 345 84 35 chr6 2426882 2427085 -186852469 + LTR16A LTR ERVL 119 331 -119 298 282 243 24 chr6 2427257 2427313 -186852241 - L1MEd LINE L1 -5446 673 631 1230 203 93 32 chr6 2427313 2427658 -186851896 + MER47A DNA MER2_type 1 366 0 298 282 243 24 chr6 2427658 2427934 -186851620 - L1MEd LINE L1 -5488 631 268 1884 133 60 0 chr6 2428945 2429230 -186850324 - AluJb SINE Alu -10 302 1 872 144 8 0 chr6 2429232 2429364 -186850190 - AluJb SINE Alu -179 133 1 232 328 62 25 chr6 2429369 2429723 -186849831 - L2 LINE L2 -1611 1703 1337 616 224 92 6 chr6 2430259 2430433 -186849121 - MER5A DNA MER1_type 0 189 1 2255 106 0 0 chr6 2430788 2431080 -186848474 - AluSx SINE Alu -16 296 5 23 0 0 0 chr6 2431709 2431732 -186847822 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr6 2432488 2432530 -186847024 + AT_rich Low_complexity Low_complexity 1 42 0 240 256 8 29 chr6 2432656 2432744 -186846810 + CT-rich Low_complexity Low_complexity 1 86 0 1800 166 10 3 chr6 2433108 2433403 -186846151 - AluJo SINE Alu -13 299 3 760 294 35 8 chr6 2435231 2435486 -186844068 - MIR SINE MIR 0 262 1 907 170 18 8 chr6 2435548 2435948 -186843606 + CT-rich Low_complexity Low_complexity 1 404 0 1008 165 62 0 chr6 2435959 2436135 -186843419 - AluJo SINE Alu -4 308 122 303 274 12 0 chr6 2436137 2436221 -186843333 + L1MC4 LINE L1 6608 6692 -1350 1499 165 44 0 chr6 2436231 2436480 -186843074 - AluJo SINE Alu -30 282 23 578 217 140 27 chr6 2436583 2436819 -186842735 + MLT1C LTR MaLR 147 425 -80 939 183 50 72 chr6 2436924 2437203 -186842351 - Charlie1 DNA MER1_type 0 2761 2489 42100 27 17 1 chr6 2437203 2443232 -186836322 - L1HS LINE L1 -3 6152 1 1402 203 34 6 chr6 2443235 2443585 -186835969 - Charlie1 DNA MER1_type -257 2504 2145 4763 171 21 19 chr6 2443595 2443638 -186835916 - L1MB3 LINE L1 -2 6181 6140 2144 94 17 3 chr6 2443638 2443935 -186835619 + AluSx SINE Alu 2 302 -10 4763 171 21 19 chr6 2443935 2444278 -186835276 - L1MB3 LINE L1 -43 6140 5799 297 51 0 0 chr6 2444278 2444317 -186835237 + (TG)n Simple_repeat Simple_repeat 2 40 0 4763 171 21 19 chr6 2444317 2445081 -186834473 - L1MB3 LINE L1 -384 5799 5027 1008 211 33 31 chr6 2445086 2445438 -186834116 - MLT1E LTR MaLR -124 453 9 260 153 143 102 chr6 2445445 2445543 -186834011 - L2 LINE L2 -597 2717 2616 257 279 44 0 chr6 2445576 2445644 -186833910 - L2 LINE L2 -9 3304 3234 2090 135 3 22 chr6 2445676 2446040 -186833514 - L1MA5 LINE L1 -6 6294 5938 924 157 7 0 chr6 2446042 2446195 -186833359 + L1MA5 LINE L1 5787 5940 -360 239 271 78 47 chr6 2447438 2447567 -186831987 - MER5A DNA MER1_type -2 187 55 * 240 310 70 10 chr6 2447468 2447568 -186831986 + MER5A DNA MER1_type 41 146 -43 2356 270 110 14 chr6 2447613 2448679 -186830875 - L2 LINE L2 -24 3289 1917 859 277 100 0 chr6 2448684 2448984 -186830570 - L2 LINE L2 -1622 1692 1363 584 330 75 4 chr6 2448991 2449230 -186830324 - L2 LINE L2 -2194 1120 865 213 39 0 0 chr6 2451047 2451073 -186828481 + (TA)n Simple_repeat Simple_repeat 2 27 0 1247 266 110 2 chr6 2451370 2451814 -186827740 + L1ME3 LINE L1 5659 6150 -12 185 315 37 0 chr6 2451846 2451900 -186827654 - L2 LINE L2 -88 3184 3129 323 312 46 107 chr6 2452118 2452641 -186826913 + L2 LINE L2 1915 2405 -909 361 266 243 54 chr6 2452957 2453435 -186826119 - MLT1K LTR MaLR -18 570 3 246 335 32 11 chr6 2454025 2454145 -186825409 + MIR3 SINE MIR 30 154 -54 357 273 41 67 chr6 2457472 2457666 -186821888 + L1MC5 LINE L1 7736 7924 -37 261 324 0 38 chr6 2457971 2458076 -186821478 + CT-rich Low_complexity Low_complexity 5 105 0 781 358 154 2 chr6 2458464 2458930 -186820624 + L3 LINE CR1 703 1239 -338 901 256 87 73 chr6 2459500 2459949 -186819605 + L1MDb LINE L1 782 1236 -5173 399 234 78 0 chr6 2459950 2460091 -186819463 + MER63 DNA MER1_type 911 1062 0 560 173 105 65 chr6 2462091 2462309 -186817245 + MER106B DNA MER1_type 10 1059 0 1814 144 47 3 chr6 2462464 2462763 -186816791 - AluSx SINE Alu 0 312 1 180 250 0 0 chr6 2463982 2464022 -186815532 + L2 LINE L2 3153 3192 -80 2392 65 0 0 chr6 2464050 2464344 -186815210 + AluY SINE Alu 1 294 -17 388 35 0 188 chr6 2464367 2464452 -186815102 - MADE1 DNA Mariner 0 80 12 889 250 100 109 chr6 2464830 2465263 -186814291 + MER110 LTR ERV1 80 484 -3 539 41 27 0 chr6 2465383 2465456 -186814098 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 21 0 0 0 chr6 2465470 2465491 -186814063 + AT_rich Low_complexity Low_complexity 1 21 0 1651 167 32 3 chr6 2465502 2465784 -186813770 + AluJb SINE Alu 1 290 -22 4721 148 14 3 chr6 2465864 2466640 -186812914 - L1MA7 LINE L1 0 6291 5507 998 186 5 0 chr6 2467353 2467541 -186812013 + MER53 DNA DNA 1 189 0 267 329 0 0 chr6 2468983 2469056 -186810498 - MIR3 SINE MIR -17 191 119 562 279 129 49 chr6 2471075 2471501 -186808053 - L2 LINE L2 0 3272 2813 464 135 0 0 chr6 2472053 2472127 -186807427 - L1MB8 LINE L1 -11 6167 6094 2110 106 7 3 chr6 2472162 2472455 -186807099 - AluSx SINE Alu -18 294 1 4362 178 21 22 chr6 2472457 2473429 -186806125 - L1MB4 LINE L1 -42 6138 5170 942 228 61 58 chr6 2474222 2474634 -186804920 - L1MC5 LINE L1 -30 7931 7519 26 0 0 0 chr6 2475336 2475362 -186804192 + AT_rich Low_complexity Low_complexity 1 26 0 1735 173 38 20 chr6 2476109 2476456 -186803098 - L1MC1 LINE L1 0 6333 5981 1243 157 175 92 chr6 2476458 2476622 -186802932 - LTR54B LTR ERV1 -2 496 347 2231 97 7 0 chr6 2476622 2476930 -186802624 - AluSq SINE Alu -3 310 1 1243 157 175 92 chr6 2476930 2477223 -186802331 - LTR54B LTR ERV1 -151 347 1 213 39 0 0 chr6 2477450 2477476 -186802078 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr6 2477635 2477657 -186801897 + AT_rich Low_complexity Low_complexity 1 22 0 221 116 0 23 chr6 2478043 2478086 -186801468 + (GGAGAA)n Simple_repeat Simple_repeat 1 42 0 344 309 73 0 chr6 2479257 2479393 -186800161 + MER117 DNA MER1_type 4 149 -48 1744 100 61 0 chr6 2480980 2481241 -186798313 + AluSg SINE Alu 1 277 -33 198 0 0 0 chr6 2481243 2481265 -186798289 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 564 286 128 30 chr6 2482423 2482828 -186796726 + LTR16B LTR ERVL 20 464 0 2081 109 0 3 chr6 2483128 2483422 -186796132 - AluSc SINE Alu -16 293 1 310 268 116 27 chr6 2483770 2483882 -186795672 - MIR SINE MIR -37 225 104 1900 99 70 0 chr6 2484605 2484889 -186794665 - AluSx SINE Alu -8 304 1 2251 80 3 0 chr6 2485171 2485460 -186794094 - AluSp SINE Alu -23 290 1 424 263 67 59 chr6 2485566 2485836 -186793718 - L1MC1 LINE L1 -2036 5772 5501 1991 202 74 41 chr6 2486028 2486567 -186792987 - MER74A LTR ERVL 0 558 2 363 199 22 33 chr6 2487665 2487846 -186791708 + GA-rich Low_complexity Low_complexity 1 179 0 748 254 33 8 chr6 2487949 2488189 -186791365 + MLT1C LTR MaLR 210 455 -12 1424 289 74 9 chr6 2488932 2489458 -186790096 + L1ME3A LINE L1 5545 6104 -66 279 347 76 0 chr6 2489859 2490003 -186789551 - LTR33 LTR ERVL -193 328 174 1954 141 0 7 chr6 2490444 2490741 -186788813 + AluJo SINE Alu 4 298 -14 2120 126 0 10 chr6 2491423 2491732 -186787822 + AluSc SINE Alu 1 306 -3 199 318 45 0 chr6 2494709 2494797 -186784757 + MIR SINE MIR 87 178 -84 374 294 35 0 chr6 2495899 2496042 -186783512 - MIR SINE MIR -67 195 48 917 202 54 9 chr6 2496057 2496280 -186783274 + MER58 DNA MER1_type 2 234 -107 402 177 0 0 chr6 2496280 2496342 -186783212 + MER58 DNA MER1_type 2346 2407 -13 712 195 50 6 chr6 2496366 2496525 -186783029 - MER5A DNA MER1_type -22 167 2 4185 160 69 90 chr6 2498163 2498486 -186781068 - LTR12 LTR ERV1 0 826 498 1558 117 4 9 chr6 2498486 2498717 -186780837 + AluY SINE Alu 81 310 -1 4185 160 69 90 chr6 2498717 2499237 -186780317 - LTR12 LTR ERV1 -328 498 1 2137 125 7 0 chr6 2499472 2499777 -186779777 + AluSx SINE Alu 1 307 -5 265 311 22 11 chr6 2500269 2500359 -186779195 - MIR3 SINE MIR -21 187 97 1777 203 68 6 chr6 2500421 2500903 -186778651 - MER69 DNA AcHobo -2 2524 2010 874 261 89 7 chr6 2500901 2501181 -186778373 - MER69 DNA AcHobo -658 568 266 * 3442 182 37 17 chr6 2501981 2502628 -186776926 - MER21B LTR ERV1 -1 862 203 42 57 0 0 chr6 2502822 2502892 -186776662 + GC_rich Low_complexity Low_complexity 1 70 0 342 0 0 0 chr6 2503572 2503610 -186775944 + (A)n Simple_repeat Simple_repeat 1 38 0 297 219 0 0 chr6 2506222 2506295 -186773259 + (CA)n Simple_repeat Simple_repeat 1 73 0 2155 109 33 3 chr6 2506489 2506792 -186772762 - AluSx SINE Alu 0 312 1 670 285 45 5 chr6 2506893 2507093 -186772461 + MER63A DNA MER1_type 2 209 -1 190 227 0 23 chr6 2507474 2507518 -186772036 - L3b LINE CR1 -13 1570 1528 1057 244 238 18 chr6 2507964 2508522 -186771032 - L2 LINE L2 -752 2562 1882 465 246 109 58 chr6 2508857 2509186 -186770368 - L1ME4a LINE L1 -6 6115 5770 565 293 63 10 chr6 2509444 2509649 -186769905 + MIR SINE MIR 5 220 -42 228 67 0 0 chr6 2509700 2509730 -186769824 + (TC)n Simple_repeat Simple_repeat 1 30 0 249 57 0 0 chr6 2509735 2509770 -186769784 + (CA)n Simple_repeat Simple_repeat 1 35 0 1772 180 31 0 chr6 2509770 2510058 -186769496 - AluJb SINE Alu -15 297 1 1964 173 17 0 chr6 2510799 2511151 -186768403 + MLT1B LTR MaLR 9 366 -24 4054 164 37 8 chr6 2511232 2511934 -186767620 + MER72 LTR ERV1 1 722 0 724 219 77 20 chr6 2512344 2512459 -186767095 + MER3 DNA MER1_type 3 135 -74 2309 144 25 0 chr6 2512459 2512814 -186766740 - THE1B LTR MaLR 0 364 1 724 219 77 20 chr6 2512814 2512894 -186766660 + MER3 DNA MER1_type 135 209 0 2279 117 0 0 chr6 2513505 2513814 -186765740 + AluSx SINE Alu 1 309 -3 337 168 262 40 chr6 2513848 2513997 -186765557 - MER53 DNA DNA -3 186 5 223 295 64 0 chr6 2514284 2514362 -186765192 + L2 LINE L2 3196 3278 -35 2520 198 30 85 chr6 2516177 2516908 -186762646 + LTR8 LTR ERV1 1 691 0 237 314 38 60 chr6 2516953 2517138 -186762416 + L2 LINE L2 2926 3106 -166 219 330 0 0 chr6 2517204 2517292 -186762262 + (CATA)n Simple_repeat Simple_repeat 1 88 0 189 189 0 0 chr6 2517355 2517392 -186762162 + L2 LINE L2 3274 3310 -3 333 205 219 53 chr6 2518778 2518929 -186760625 + MER5A DNA MER1_type 14 189 0 2172 129 0 0 chr6 2519421 2519723 -186759831 + AluSx SINE Alu 5 306 -6 409 91 0 0 chr6 2519723 2519778 -186759776 + L1PA13 LINE L1 5777 5831 -332 685 211 0 0 chr6 2520086 2520225 -186759329 - FLAM_A SINE Alu 0 142 4 250 297 152 51 chr6 2520289 2520389 -186759165 - L1ME4a LINE L1 -21 6100 6012 1878 134 43 7 chr6 2520389 2520688 -186758866 - AluSq SINE Alu -3 310 1 250 297 152 51 chr6 2520688 2520843 -186758711 - L1ME4a LINE L1 -109 6012 5819 392 220 22 0 chr6 2520899 2520990 -186758564 - L1ME4a LINE L1 -393 5728 5636 2268 90 7 3 chr6 2521507 2521797 -186757757 + AluSg SINE Alu 1 291 -19 22 35 0 0 chr6 2523288 2523317 -186756237 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr6 2523389 2523419 -186756135 + (T)n Simple_repeat Simple_repeat 1 30 0 2016 120 0 24 chr6 2524065 2524356 -186755198 - AluSx SINE Alu -28 284 1 250 304 60 60 chr6 2524367 2524535 -186755019 - MER5B DNA MER1_type -7 171 4 742 164 70 0 chr6 2525014 2525142 -186754412 + FRAM SINE Alu 22 158 -18 306 313 21 0 chr6 2525463 2525559 -186753995 + (TG)n Simple_repeat Simple_repeat 1 98 0 376 262 170 7 chr6 2525816 2525957 -186753597 + MIR SINE MIR 88 251 -11 866 211 78 0 chr6 2528401 2528605 -186750949 + MER58A DNA MER1_type 1 220 -4 291 229 97 69 chr6 2530194 2530369 -186749185 + MER117 DNA MER1_type 1 180 -17 234 301 87 10 chr6 2532130 2532233 -186747321 - L2 LINE L2 0 3272 3162 392 194 14 0 chr6 2532489 2532561 -186746993 + MER81 DNA DNA 22 94 -20 360 316 65 26 chr6 2532666 2532755 -186746799 - L2 LINE L2 -470 2844 2745 2021 122 40 3 chr6 2532755 2533051 -186746503 - AluSc SINE Alu -2 307 1 360 316 65 26 chr6 2533051 2533116 -186746438 - L2 LINE L2 -569 2745 2684 231 119 24 24 chr6 2533189 2533231 -186746323 + MER63 DNA MER1_type 3 44 -392 2480 154 78 83 chr6 2533235 2533798 -186745756 - LTR31 LTR ERV1 0 619 60 869 86 39 17 chr6 2534193 2534426 -186745128 + (TAGA)n Simple_repeat Simple_repeat 2 239 0 2063 163 113 44 chr6 2534568 2535089 -186744465 - LTR31 LTR ERV1 -3 616 60 839 56 39 39 chr6 2535505 2535685 -186743869 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 7236 162 21 41 chr6 2535847 2537248 -186742306 - L1MC3 LINE L1 -1 7784 6411 1063 104 0 0 chr6 2537248 2537383 -186742171 - AluSq/x SINE Alu -178 135 1 231 211 105 0 chr6 2537384 2537441 -186742113 - MLT1D LTR MaLR -415 90 28 4154 264 39 37 chr6 2537516 2538061 -186741493 - L1M4 LINE L1 -1572 4574 4032 1800 135 8 0 chr6 2538061 2538327 -186741227 + AluSq SINE Alu 1 268 -45 4154 264 39 37 chr6 2538327 2539430 -186740124 - L1M4 LINE L1 -2114 4032 2922 248 316 31 10 chr6 2540512 2540610 -186738944 - L2 LINE L2 -201 3071 2972 300 53 0 0 chr6 2540826 2540864 -186738690 + (TG)n Simple_repeat Simple_repeat 1 38 0 315 172 0 115 chr6 2541012 2541099 -186738455 - Tigger5 DNA MER2_type 0 2323 2247 277 129 233 5 chr6 2541100 2541214 -186738340 - Tigger5 DNA MER2_type -2130 193 1 41 48 0 0 chr6 2541598 2541660 -186737894 + AT_rich Low_complexity Low_complexity 1 62 0 801 173 0 8 chr6 2541664 2541797 -186737757 + AluJo/FLAM SINE Alu 2 133 -179 1364 179 3 70 chr6 2541799 2541893 -186737661 + AluJo SINE Alu 1 100 -212 2042 152 123 5 chr6 2541893 2542274 -186737280 - MSTA LTR MaLR 0 428 3 1364 179 3 70 chr6 2542274 2542480 -186737074 + AluJo SINE Alu 100 281 -31 1532 159 9 83 chr6 2542961 2543288 -186736266 - AluJo SINE Alu -9 303 1 1696 102 9 0 chr6 2543859 2544085 -186735469 - AluSc SINE Alu -2 307 80 713 140 0 129 chr6 2544348 2544383 -186735171 - L1MB3 LINE L1 -15 6168 6130 880 204 0 6 chr6 2544383 2544540 -186735014 - FRAM SINE Alu -9 157 2 713 140 0 129 chr6 2544540 2544682 -186734872 - L1MB3 LINE L1 -53 6130 6014 354 243 32 32 chr6 2546206 2546334 -186733220 - MIR SINE MIR -55 153 43 225 235 0 42 chr6 2547448 2547614 -186731940 + C-rich Low_complexity Low_complexity 3 161 0 698 206 52 123 chr6 2548293 2548341 -186731213 + L1ME2 LINE L1 5831 5881 -283 840 135 38 0 chr6 2548341 2548474 -186731080 + L1MA2 LINE L1 6167 6304 0 698 206 52 123 chr6 2548474 2548774 -186730780 + L1ME2 LINE L1 5881 6154 -10 403 273 22 43 chr6 2549418 2549557 -186729997 + MLT1J LTR MaLR 226 361 -150 245 216 80 23 chr6 2549586 2549674 -186729880 + MLT1L LTR MaLR 521 613 -2 2421 71 0 3 chr6 2549902 2550199 -186729355 - AluY SINE Alu -15 296 1 531 153 0 0 chr6 2551843 2551928 -186727626 + FLAM SINE Alu 40 124 -19 611 174 0 0 chr6 2555374 2555483 -186724071 - L1MA9 LINE L1 0 6312 6204 2405 87 3 0 chr6 2555880 2556178 -186723376 - AluSp SINE Alu -14 299 1 417 262 72 51 chr6 2557331 2557568 -186721986 + L1M4 LINE L1 3735 3976 -2170 269 324 22 0 chr6 2557585 2557724 -186721830 + L1M4 LINE L1 4060 4201 -1945 1047 189 0 0 chr6 2557858 2558033 -186721521 + FAM SINE Alu 1 175 0 277 269 9 56 chr6 2558482 2558590 -186720964 - LTR33 LTR ERVL -418 103 1 23 33 0 0 chr6 2558820 2558850 -186720704 + AT_rich Low_complexity Low_complexity 1 30 0 1062 185 30 5 chr6 2559128 2559328 -186720226 + MER58B DNA MER1_type 129 333 -8 313 263 23 83 chr6 2560815 2560948 -186718606 - MIR SINE MIR -80 182 58 630 269 42 0 chr6 2562363 2562530 -186717024 - MIR SINE MIR -48 214 41 2166 115 0 13 chr6 2562838 2563142 -186716412 + AluSx SINE Alu 1 300 -12 227 350 10 19 chr6 2564835 2564938 -186714616 - MIR SINE MIR -156 106 5 476 229 122 64 chr6 2565196 2565523 -186714031 + L1ME4a LINE L1 5770 6115 -6 836 287 130 5 chr6 2565858 2566266 -186713288 + L2 LINE L2 1882 2340 -974 318 50 0 0 chr6 2566272 2566312 -186713242 + (CA)n Simple_repeat Simple_repeat 1 40 0 370 115 0 0 chr6 2566325 2566377 -186713177 + MER58B DNA MER1_type 278 329 -12 2431 271 184 20 chr6 2566542 2568067 -186711487 - L2 LINE L2 0 3313 1530 254 208 292 10 chr6 2568067 2568163 -186711391 + MER34 LTR ERV1 1 123 -419 278 146 110 98 chr6 2568235 2568317 -186711237 + MER39 LTR ERV1 380 462 -245 1682 113 4 0 chr6 2568317 2568546 -186711008 + AluSg/x SINE Alu 66 295 -15 919 177 17 17 chr6 2568616 2568797 -186710757 - L1MB3 LINE L1 0 6183 6003 491 224 26 0 chr6 2569929 2570045 -186709509 - MIR SINE MIR 0 262 144 1309 187 85 40 chr6 2570076 2570402 -186709152 + L1MB7 LINE L1 5833 6174 -10 1131 256 155 5 chr6 2570825 2571250 -186708304 + LTR50 LTR ERVL 31 519 -276 1722 175 75 24 chr6 2571270 2571642 -186707912 + MLT1C LTR MaLR 3 393 -74 890 132 14 7 chr6 2571678 2571822 -186707732 - L1MA9 LINE L1 0 6312 6168 324 0 0 0 chr6 2571822 2571858 -186707696 + (TG)n Simple_repeat Simple_repeat 2 37 0 799 155 20 37 chr6 2571972 2572168 -186707386 + L1M1 LINE L1 5218 5418 -766 279 109 0 0 chr6 2572183 2572229 -186707325 + L1M1 LINE L1 5388 5433 -867 374 280 98 8 chr6 2572270 2572402 -186707152 - MIR SINE MIR -118 144 1 823 303 0 5 chr6 2572569 2572787 -186706767 - LTR16B LTR ERVL -214 250 34 1136 189 78 66 chr6 2572927 2573347 -186706207 + MLT2B1 LTR ERVL 1 414 0 554 311 51 26 chr6 2573687 2574043 -186705511 - HERV16 LTR ERVL -619 4563 4010 801 273 104 30 chr6 2574356 2575078 -186704476 - HERV16 LTR ERVL -1347 3649 3135 1331 298 74 32 chr6 2575165 2575729 -186703825 - HERV16 LTR ERVL -2059 2937 2417 239 333 11 0 chr6 2576743 2576833 -186702721 - MIR3 SINE MIR -3 205 115 278 138 108 0 chr6 2577053 2577118 -186702436 + MIR3 SINE MIR 135 206 -2 1818 255 82 41 chr6 2577624 2577946 -186701608 + L1MC4a LINE L1 5281 5588 -2220 2317 86 3 7 chr6 2577946 2578248 -186701306 + AluY SINE Alu 1 301 -10 1818 255 82 41 chr6 2578248 2578646 -186700908 + L1MC4a LINE L1 5588 6044 -1764 2030 134 82 26 chr6 2578646 2578997 -186700557 - L1PA16 LINE L1 -8 6158 5783 2101 150 0 0 chr6 2578997 2579304 -186700250 - AluSx SINE Alu -5 307 1 2030 134 82 26 chr6 2579304 2579332 -186700222 - L1PA16 LINE L1 -383 5783 5758 1818 255 82 41 chr6 2579332 2579460 -186700094 + L1MC4a LINE L1 6044 6165 -1643 489 237 183 6 chr6 2579755 2579924 -186699630 + L2 LINE L2 2611 2809 -505 343 239 186 9 chr6 2579960 2580073 -186699481 + LTR41 LTR ERVL 30 162 -611 203 357 0 0 chr6 2580468 2580538 -186699016 - L3 LINE CR1 -1302 275 206 335 312 88 58 chr6 2582000 2582398 -186697156 + L1M4 LINE L1 2431 2853 -3293 2272 124 0 0 chr6 2582398 2582704 -186696850 + AluSx SINE Alu 1 306 -6 335 312 88 58 chr6 2582704 2582875 -186696679 + L1M4 LINE L1 2853 3017 -3129 333 205 219 53 chr6 2583130 2583281 -186696273 + MER5A DNA MER1_type 14 189 0 2183 111 0 0 chr6 2583773 2584061 -186695493 + AluSx SINE Alu 5 292 -20 187 347 32 11 chr6 2584243 2584338 -186695216 + L2 LINE L2 3208 3304 -9 685 211 0 0 chr6 2584780 2584921 -186694633 - FLAM_A SINE Alu 0 144 4 1104 136 65 5 chr6 2585085 2585269 -186694285 - AluSg/x SINE Alu -4 306 112 7213 216 50 27 chr6 2585370 2588073 -186691481 - L1MDa LINE L1 -2710 3830 719 2454 83 3 0 chr6 2588073 2588375 -186691179 - AluSp SINE Alu -10 303 1 7213 216 50 27 chr6 2588375 2589094 -186690460 - L1MDa LINE L1 -5821 719 18 341 215 87 132 chr6 2589321 2589586 -186689968 - L1ME4a LINE L1 -246 5875 5623 984 169 7 0 chr6 2589816 2589970 -186689584 - FRAM SINE Alu -25 151 1 736 11 21 0 chr6 2590120 2590213 -186689341 + (GAAA)n Simple_repeat Simple_repeat 2 96 0 1189 208 186 12 chr6 2590717 2591131 -186688423 - LTR54B LTR ERV1 -10 488 3 194 241 181 0 chr6 2591906 2592022 -186687532 + L2 LINE L2 2251 2387 -927 505 287 5 37 chr6 2592722 2592910 -186686644 + MIR SINE MIR 78 259 -3 385 145 0 29 chr6 2594508 2594577 -186684977 - Tigger2 DNA MER2_type -1518 1200 1134 4713 129 93 13 chr6 2594601 2595354 -186684200 - L1MA5A LINE L1 -3 6294 5464 255 114 0 0 chr6 2595354 2595398 -186684156 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 4713 129 93 13 chr6 2595398 2595497 -186684057 - L1MA5A LINE L1 -833 5464 5374 * 15846 192 57 10 chr6 2595491 2595872 -186683682 - L1PB1 LINE L1 -4 6863 6502 240 86 0 0 chr6 2595872 2595907 -186683647 + (CA)n Simple_repeat Simple_repeat 2 36 0 15846 192 57 10 chr6 2595907 2597284 -186682270 - L1PB1 LINE L1 -365 6502 5192 189 0 0 0 chr6 2597284 2597305 -186682249 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 15846 192 57 10 chr6 2597305 2602095 -186677459 - L1PB1 LINE L1 -1675 5192 6 2171 184 38 0 chr6 2602103 2602549 -186677005 - L1MA5A LINE L1 -752 5394 4932 30 0 0 0 chr6 2603474 2603504 -186676050 + AT_rich Low_complexity Low_complexity 1 30 0 340 257 23 17 chr6 2603572 2603747 -186675807 + (TATAA)n Simple_repeat Simple_repeat 4 179 0 683 271 33 38 chr6 2603762 2604002 -186675552 + LTR16A LTR ERVL 54 292 -158 1502 321 78 10 chr6 2604125 2605416 -186674138 + HERV16 LTR ERVL 1 1421 -3575 2387 295 57 25 chr6 2605518 2605633 -186673921 + HERV16 LTR ERVL 1613 1723 -3781 2051 140 0 31 chr6 2605633 2605954 -186673600 + AluJo SINE Alu 1 311 -1 2249 111 0 0 chr6 2605956 2606245 -186673309 + AluSx SINE Alu 3 291 -21 2387 295 57 25 chr6 2606245 2607448 -186672106 + HERV16 LTR ERVL 1723 3008 -2496 1017 217 74 106 chr6 2607461 2607973 -186671581 - MLT1D LTR MaLR -1 504 5 397 309 116 52 chr6 2608039 2608618 -186670936 + HERV16 LTR ERVL 3163 3778 -1986 826 186 96 0 chr6 2608836 2609024 -186670530 - MER20 DNA MER1_type -13 206 1 538 193 88 64 chr6 2609422 2609500 -186670054 - MER45A DNA AcHobo -1403 178 103 2339 104 0 0 chr6 2609500 2609797 -186669757 + AluSx SINE Alu 11 307 -5 538 193 88 64 chr6 2609797 2609889 -186669665 - MER45A DNA AcHobo -1478 103 4 211 270 149 0 chr6 2610438 2610512 -186669042 + MIR SINE MIR 32 116 -92 396 0 0 0 chr6 2610699 2610743 -186668811 + (TG)n Simple_repeat Simple_repeat 1 44 0 1752 157 77 65 chr6 2611501 2611546 -186668008 - MLT2D LTR ERVL -3 411 368 198 0 0 0 chr6 2611546 2611568 -186667986 + (TC)n Simple_repeat Simple_repeat 2 23 0 1752 157 77 65 chr6 2611568 2611924 -186667630 - MLT2D LTR ERVL -46 368 5 398 212 179 7 chr6 2612302 2612453 -186667101 + MLT1I LTR MaLR 2 178 -231 1813 189 34 11 chr6 2612817 2613172 -186666382 + MLT1A1 LTR MaLR 1 363 -2 369 317 87 6 chr6 2613673 2613856 -186665698 + L1MC2 LINE L1 3917 4114 -2032 2284 113 0 0 chr6 2614176 2614478 -186665076 - AluSx SINE Alu -10 302 1 245 287 108 6 chr6 2614893 2615050 -186664504 + L1P LINE L1 4875 5047 -1099 840 143 0 0 chr6 2615722 2615855 -186663699 - AluSg/x SINE Alu -1 309 177 183 268 28 0 chr6 2615855 2615926 -186663628 - L2 LINE L2 -45 3227 3155 2591 50 0 0 chr6 2616082 2616382 -186663172 + AluY SINE Alu 1 300 -11 941 122 11 17 chr6 2617016 2617197 -186662357 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 306 206 0 37 chr6 2617240 2617347 -186662207 + GA-rich Low_complexity Low_complexity 2 104 0 696 296 31 57 chr6 2619706 2619939 -186659615 + L1MC2 LINE L1 5309 5535 -637 2149 103 0 0 chr6 2619939 2620212 -186659342 + AluSc SINE Alu 30 302 -7 696 296 31 57 chr6 2620212 2620338 -186659216 + L1MC2 LINE L1 5535 5663 -509 314 246 27 27 chr6 2620364 2620474 -186659080 - MLT1F1 LTR MaLR -434 133 24 673 156 14 7 chr6 2620474 2620615 -186658939 - L1MC3 LINE L1 -700 7085 6944 227 277 69 30 chr6 2620754 2620855 -186658699 - L2 LINE L2 -20 3293 3189 6289 123 66 7 chr6 2622057 2623142 -186656412 - L1MC1 LINE L1 -9 6324 5175 523 293 116 13 chr6 2623779 2623939 -186655615 - MIR SINE MIR -5 257 64 1964 151 0 23 chr6 2623939 2624244 -186655310 - AluJo SINE Alu -14 298 1 523 293 116 13 chr6 2624244 2624315 -186655239 - MIR SINE MIR -198 64 2 500 264 24 0 chr6 2624315 2624437 -186655117 + MIR SINE MIR 47 171 -91 384 161 0 62 chr6 2624586 2624667 -186654887 - MLT1D LTR MaLR 0 505 430 620 65 0 0 chr6 2624667 2624744 -186654810 - L1P2 LINE L1 -501 5653 5577 3189 42 8 0 chr6 2624744 2625125 -186654429 + L1PA7 LINE L1 5759 6143 -11 2003 230 11 45 chr6 2625153 2625622 -186653932 - MLT1D LTR MaLR -52 453 1 5099 110 7 1 chr6 2626068 2626798 -186652756 - L1PA14 LINE L1 -65 6096 5363 374 312 16 8 chr6 2627290 2627415 -186652139 - MIR3 SINE MIR -23 185 60 181 286 13 26 chr6 2627941 2628018 -186651536 + L2 LINE L2 3016 3091 -181 2318 107 3 0 chr6 2628030 2628329 -186651225 - AluSx SINE Alu -12 300 1 1948 168 16 45 chr6 2628468 2628848 -186650706 + MSTB LTR MaLR 58 426 0 335 277 188 20 chr6 2629355 2629557 -186649997 + MIR SINE MIR 17 252 -10 2178 180 31 5 chr6 2629824 2630241 -186649313 + L1MC2 LINE L1 5854 6281 -63 321 260 13 0 chr6 2630249 2630326 -186649228 - MLT1H1 LTR MaLR -468 87 10 186 133 0 0 chr6 2631600 2631630 -186647924 + (GGA)n Simple_repeat Simple_repeat 2 31 0 1415 197 93 54 chr6 2632725 2633167 -186646387 + MLT1E3 LTR MaLR 104 562 -62 700 262 11 11 chr6 2633170 2633392 -186646162 + L1PB4 LINE L1 5950 6171 0 384 184 0 71 chr6 2633399 2633497 -186646057 + MLT1E LTR MaLR 503 593 0 711 135 6 140 chr6 2633821 2633910 -186645644 - MER96B DNA MER1_type? -4 413 314 1067 141 11 6 chr6 2633910 2634087 -186645467 - L1MB3 LINE L1 -1 6182 6005 711 135 6 140 chr6 2634087 2634108 -186645446 - MER96B DNA MER1_type? -103 314 292 2211 195 39 9 chr6 2634108 2634569 -186644985 - L1MC1 LINE L1 -8 6325 5851 711 135 6 140 chr6 2634569 2634635 -186644919 - MER96B DNA MER1_type? -125 292 260 183 80 0 0 chr6 2637633 2637658 -186641896 + (T)n Simple_repeat Simple_repeat 1 25 0 601 155 26 0 chr6 2639118 2639234 -186640320 - L1MB3 LINE L1 -1 6182 6064 946 178 53 14 chr6 2640209 2640417 -186639137 + MER20 DNA MER1_type 1 216 -3 2310 108 0 13 chr6 2640946 2641253 -186638301 - AluSx SINE Alu -9 303 1 280 288 14 0 chr6 2641410 2641483 -186638071 + MER112 DNA MER1_type 179 252 -8 1640 196 46 0 chr6 2641534 2641881 -186637673 + MLT2D LTR ERVL 1 363 -51 411 163 150 94 chr6 2641969 2642129 -186637425 + MLT1C LTR MaLR 1 169 -298 350 223 122 21 chr6 2642409 2642578 -186636976 + MLT1I LTR MaLR 266 409 0 351 301 68 40 chr6 2643950 2644126 -186635428 + MIR SINE MIR 36 216 -46 228 262 117 55 chr6 2645631 2645776 -186633778 + MIR SINE MIR 33 186 -76 2145 73 0 18 chr6 2647433 2647705 -186631849 - AluSq SINE Alu -13 300 34 2810 218 64 13 chr6 2648248 2648949 -186630605 - L1MB3 LINE L1 -4 6179 5443 440 314 5 19 chr6 2649248 2649455 -186630099 + SST1 Satellite centromeric 1349 1552 -11 369 75 0 0 chr6 2649481 2649534 -186630020 + (TG)n Simple_repeat Simple_repeat 1 53 0 2302 107 0 0 chr6 2649700 2649991 -186629563 + AluSc SINE Alu 1 291 -18 1006 280 40 26 chr6 2650530 2650984 -186628570 + SST1 Satellite centromeric 1 460 -1103 672 316 51 11 chr6 2651043 2651417 -186628137 + SST1 Satellite centromeric 1161 1549 -14 303 130 0 0 chr6 2651449 2651503 -186628051 + (TG)n Simple_repeat Simple_repeat 1 54 0 258 221 16 123 chr6 2652835 2652957 -186626597 + MER5B DNA MER1_type 1 109 -69 343 266 12 0 chr6 2653428 2653601 -186625953 + (CA)n Simple_repeat Simple_repeat 2 176 0 191 250 105 0 chr6 2654629 2654705 -186624849 + MIR SINE MIR 94 177 -85 1783 172 14 0 chr6 2654726 2655023 -186624531 + AluJo SINE Alu 1 301 -11 2508 222 94 43 chr6 2655061 2655813 -186623741 + L1ME1 LINE L1 5371 6161 -5 608 323 66 10 chr6 2656524 2656812 -186622742 - LTR16C LTR ERVL -8 483 180 632 170 12 12 chr6 2658293 2658464 -186621090 + (TG)n Simple_repeat Simple_repeat 2 172 0 275 237 0 22 chr6 2658479 2658614 -186620940 + (TG)n Simple_repeat Simple_repeat 2 133 0 341 227 0 21 chr6 2658636 2658733 -186620821 + (TG)n Simple_repeat Simple_repeat 2 96 0 271 327 52 47 chr6 2659071 2659282 -186620272 + MIR SINE MIR 50 261 -1 6533 244 60 32 chr6 2659620 2661723 -186617831 + L1ME1 LINE L1 2980 5200 -966 2052 124 0 3 chr6 2661723 2662032 -186617522 + AluSx SINE Alu 1 308 0 6533 244 60 32 chr6 2662032 2663023 -186616531 + L1ME1 LINE L1 5200 6162 -4 2170 110 7 10 chr6 2663164 2663464 -186616090 + AluSg SINE Alu 1 299 -11 479 191 167 12 chr6 2663464 2663632 -186615922 + MER5C DNA MER1_type 131 324 0 5780 228 59 43 chr6 2663753 2664959 -186614595 + L1M4 LINE L1 14 1200 -5444 2294 60 6 73 chr6 2664959 2665273 -186614281 + AluY SINE Alu 1 293 -18 5780 228 59 43 chr6 2665273 2666362 -186613192 + L1M4 LINE L1 1200 2271 -4373 2318 119 0 0 chr6 2666362 2666665 -186612889 + AluSx SINE Alu 1 303 -9 5780 228 59 43 chr6 2666665 2667671 -186611883 + L1M4 LINE L1 2271 3515 -3129 408 366 40 13 chr6 2667683 2668131 -186611423 - MARNA DNA Mariner -75 511 52 26 30 0 0 chr6 2669201 2669234 -186610320 + AT_rich Low_complexity Low_complexity 1 33 0 271 325 25 0 chr6 2669997 2670117 -186609437 + MLT1-int LTR MaLR 21 143 -1228 583 285 27 16 chr6 2670152 2670408 -186609146 + MLT1-int LTR MaLR 292 550 -821 278 338 73 7 chr6 2670636 2670787 -186608767 + MLT1-int LTR MaLR 692 852 -519 1233 214 126 23 chr6 2671025 2671334 -186608220 + MLT1F LTR MaLR 13 353 -189 24 32 0 0 chr6 2672510 2672541 -186607013 + AT_rich Low_complexity Low_complexity 1 31 0 222 118 59 0 chr6 2672613 2672664 -186606890 + (TAA)n Simple_repeat Simple_repeat 2 55 0 344 231 214 0 chr6 2672835 2672952 -186606602 + MER5A DNA MER1_type 41 182 -7 374 312 139 5 chr6 2672965 2673167 -186606387 + MIR SINE MIR 16 244 -18 1922 112 45 159 chr6 2675103 2675586 -186603968 + MSTA LTR MaLR 1 428 0 230 0 33 0 chr6 2677896 2677926 -186601628 + (TG)n Simple_repeat Simple_repeat 2 32 0 1721 81 14 0 chr6 2678309 2678532 -186601022 + AluSc SINE Alu 76 301 -8 21 36 0 0 chr6 2679608 2679636 -186599918 + AT_rich Low_complexity Low_complexity 1 28 0 472 97 14 0 chr6 2680094 2680166 -186599388 - L1PA16 LINE L1 0 6166 6094 183 42 0 0 chr6 2680736 2680760 -186598794 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1924 151 10 10 chr6 2680772 2681084 -186598470 + AluJo SINE Alu 1 312 0 2309 91 0 0 chr6 2682068 2682379 -186597175 + AluSx SINE Alu 1 311 0 184 313 23 70 chr6 2682797 2682925 -186596629 + MIR SINE MIR 65 186 -76 253 279 96 0 chr6 2684823 2684927 -186594627 + MIR SINE MIR 111 224 -38 22 56 0 0 chr6 2684962 2684998 -186594556 + AT_rich Low_complexity Low_complexity 1 36 0 261 353 116 27 chr6 2685727 2686166 -186593388 - L2 LINE L2 -649 2665 2188 2032 135 3 3 chr6 2686576 2686864 -186592690 + AluSg SINE Alu 1 288 -22 24 0 0 0 chr6 2687433 2687457 -186592097 + AT_rich Low_complexity Low_complexity 1 24 0 2259 119 0 3 chr6 2687795 2688105 -186591449 + AluSg SINE Alu 1 309 -1 197 236 100 70 chr6 2688684 2688858 -186590696 + MIR SINE MIR 29 210 -52 280 325 145 0 chr6 2689159 2689276 -186590278 + L2 LINE L2 3134 3267 -5 195 339 167 11 chr6 2689667 2689853 -186589701 + MIR SINE MIR 43 257 -5 240 211 42 28 chr6 2689888 2689959 -186589595 - MIR3 SINE MIR -23 185 114 2358 69 24 0 chr6 2690696 2690986 -186588568 - AluSc SINE Alu -12 297 1 271 218 56 42 chr6 2693544 2693686 -186585868 - L1ME4a LINE L1 -3 6118 5975 387 0 0 0 chr6 2695376 2695419 -186584135 + (TG)n Simple_repeat Simple_repeat 2 44 0 2144 108 7 0 chr6 2695419 2695702 -186583852 - AluSx SINE Alu -27 285 1 3011 159 42 2 chr6 2695904 2696431 -186583123 - MER44D DNA MER2_type 0 605 3 1256 218 73 30 chr6 2696514 2696844 -186582710 - MER2 DNA MER2_type 0 344 1 539 219 19 129 chr6 2697699 2697773 -186581781 + MER5A DNA MER1_type 1 82 -107 2183 97 26 23 chr6 2697773 2698082 -186581472 + AluSg SINE Alu 1 310 0 539 219 19 129 chr6 2698082 2698217 -186581337 + MER5A DNA MER1_type 82 187 -2 385 282 33 6 chr6 2698704 2698870 -186580684 + ERVL LTR ERVL 2379 2553 -2934 682 304 53 30 chr6 2699083 2699386 -186580168 + ERVL LTR ERVL 2805 3114 -2540 2468 87 3 0 chr6 2700032 2700343 -186579211 - AluSx SINE Alu 0 312 1 221 300 0 0 chr6 2701791 2701851 -186577703 - L2 LINE L2 -3 3310 3251 2581 42 3 7 chr6 2702808 2703114 -186576440 - AluY SINE Alu -6 305 1 896 182 67 34 chr6 2704887 2705096 -186574458 - MER20 DNA MER1_type -2 217 2 2271 109 0 3 chr6 2705741 2706043 -186573511 - AluSq SINE Alu -12 301 1 192 246 35 0 chr6 2706118 2706175 -186573379 + L3 LINE CR1 667 725 -852 970 88 0 67 chr6 2706476 2706669 -186572885 + (TGG)n Simple_repeat Simple_repeat 1 180 0 681 177 0 0 chr6 2706783 2706930 -186572624 + (TGG)n Simple_repeat Simple_repeat 1 147 0 541 253 164 9 chr6 2706930 2707155 -186572399 - MIR SINE MIR -2 260 1 244 323 31 0 chr6 2708476 2708572 -186570982 + Charlie7 DNA MER1_type 5 103 -2509 1355 201 118 54 chr6 2708576 2708925 -186570629 + MLT1A1 LTR MaLR 4 365 0 21 36 0 0 chr6 2709006 2709034 -186570520 + AT_rich Low_complexity Low_complexity 1 28 0 2120 114 4 0 chr6 2709038 2709353 -186570201 + AluSg SINE Alu 1 316 0 290 200 111 11 chr6 2709370 2709460 -186570094 + Charlie7 DNA MER1_type 2514 2612 0 22 35 0 0 chr6 2711466 2711495 -186568059 + AT_rich Low_complexity Low_complexity 1 29 0 2256 101 0 25 chr6 2711538 2711855 -186567699 - AluSg1 SINE Alu 0 309 1 346 261 23 46 chr6 2712525 2712655 -186566899 - MER5B DNA MER1_type -30 148 22 295 272 154 49 chr6 2713961 2714123 -186565431 + MER5A DNA MER1_type 11 189 0 1491 177 12 50 chr6 2714733 2715055 -186564499 + L1MA7 LINE L1 5981 6290 -1 27 49 0 0 chr6 2715549 2715590 -186563964 + AT_rich Low_complexity Low_complexity 1 41 0 366 298 32 16 chr6 2715737 2715861 -186563693 - MER5A DNA MER1_type -57 132 7 2367 70 0 0 chr6 2715921 2716208 -186563346 - AluSc SINE Alu -3 306 20 201 256 0 0 chr6 2717912 2717955 -186561599 + L3b LINE CR1 1289 1331 -252 906 150 0 6 chr6 2718638 2718798 -186560756 + L1MA10 LINE L1 6169 6327 -7 22 0 0 0 chr6 2720368 2720390 -186559164 + AT_rich Low_complexity Low_complexity 1 22 0 27 73 0 0 chr6 2722207 2722262 -186557292 + AT_rich Low_complexity Low_complexity 1 55 0 2822 145 43 27 chr6 2722545 2723034 -186556520 + LOR1a LTR ERV1 1 497 0 383 296 173 14 chr6 2723410 2723630 -186555924 - L3 LINE CR1 -991 586 332 348 287 75 37 chr6 2725137 2725325 -186554229 + MIR SINE MIR 18 212 -50 2217 108 3 13 chr6 2725349 2725663 -186553891 + AluSp SINE Alu 3 313 0 1024 191 32 0 chr6 2726186 2726375 -186553179 + L1MB3 LINE L1 5418 5612 -559 354 169 56 134 chr6 2726421 2726563 -186552991 + MER41A LTR ERV1 174 304 -250 * 948 158 161 110 chr6 2726539 2726831 -186552723 + MER66A LTR ERV1 171 477 -1 3265 124 41 30 chr6 2726831 2727241 -186552313 + L1MB3 LINE L1 5607 6026 -157 2171 110 17 0 chr6 2727241 2727533 -186552021 + AluSp SINE Alu 1 297 -16 3265 124 41 30 chr6 2727533 2727686 -186551868 + L1MB3 LINE L1 6026 6176 -7 849 224 47 0 chr6 2728955 2729147 -186550407 + MIR SINE MIR 47 247 -15 256 276 90 35 chr6 2729220 2729365 -186550189 - L2 LINE L2 -210 3062 2910 353 293 102 0 chr6 2729894 2730051 -186549503 - MIR SINE MIR -70 192 20 2429 91 7 0 chr6 2730157 2730466 -186549088 + AluSp SINE Alu 1 311 -2 234 203 17 17 chr6 2730589 2730648 -186548906 + MLT1L LTR MaLR 11 69 -546 310 274 85 9 chr6 2730752 2730858 -186548696 + MLT1J LTR MaLR 224 337 -174 1123 101 0 0 chr6 2732114 2732253 -186547301 + AluSq/x SINE Alu 1 139 -174 380 250 125 0 chr6 2732253 2732349 -186547205 - MER5B DNA MER1_type -70 108 1 2432 71 0 3 chr6 2732381 2732678 -186546876 + AluSc SINE Alu 1 296 -13 1396 225 84 28 chr6 2732680 2732766 -186546788 + HAL1 LINE L1 887 967 -1540 533 114 13 0 chr6 2732766 2732845 -186546709 - MADE1 DNA Mariner 0 80 1 1396 225 84 28 chr6 2732845 2733139 -186546415 + HAL1 LINE L1 967 1305 -1202 2250 103 0 0 chr6 2733139 2733451 -186546103 + AluSg SINE Alu 1 312 0 1396 225 84 28 chr6 2733451 2733570 -186545984 + HAL1 LINE L1 1305 1416 -1091 481 216 22 36 chr6 2733998 2734137 -186545417 + HAL1 LINE L1 1405 1541 -966 2067 253 50 43 chr6 2734143 2734771 -186544783 + HAL1 LINE L1 1597 2234 -273 396 0 0 0 chr6 2734771 2734815 -186544739 + (TG)n Simple_repeat Simple_repeat 2 45 0 2067 253 50 43 chr6 2734815 2735091 -186544463 + HAL1 LINE L1 2234 2507 0 1872 159 3 7 chr6 2735270 2735571 -186543983 + AluJb SINE Alu 3 302 -10 243 0 0 0 chr6 2736118 2736145 -186543409 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 2193 111 0 3 chr6 2736148 2736436 -186543118 - AluSx SINE Alu -25 287 1 2018 110 0 0 chr6 2737160 2737424 -186542130 + AluSx SINE Alu 34 297 -15 1635 186 0 54 chr6 2737434 2737751 -186541803 + AluJo SINE Alu 1 300 -12 905 134 12 0 chr6 2737760 2737931 -186541623 + GA-rich Low_complexity Low_complexity 4 176 0 2564 59 3 0 chr6 2738864 2739168 -186540386 - AluSq SINE Alu -6 307 3 2354 70 0 3 chr6 2739941 2740226 -186539328 + AluSc SINE Alu 17 300 -9 422 269 39 0 chr6 2740268 2740398 -186539156 - MIR SINE MIR -70 192 58 240 338 84 38 chr6 2743749 2743962 -186535592 + L2 LINE L2 2985 3207 -65 181 303 66 25 chr6 2744475 2744597 -186534957 - MIR SINE MIR -5 257 131 229 297 43 29 chr6 2746048 2746186 -186533368 - MER5A DNA MER1_type -24 165 26 240 240 30 0 chr6 2746858 2746958 -186532596 + (TA)n Simple_repeat Simple_repeat 2 104 0 287 218 69 20 chr6 2747136 2747237 -186532317 - MER5A DNA MER1_type -80 109 4 429 294 69 25 chr6 2748149 2748309 -186531245 - MIR SINE MIR -70 192 26 1194 107 0 0 chr6 2748526 2748685 -186530869 - AluSg/x SINE Alu -25 285 127 2278 76 0 0 chr6 2749309 2749597 -186529957 + AluSc SINE Alu 19 306 -3 226 283 133 26 chr6 2750246 2750359 -186529195 - MIR SINE MIR -97 165 41 1037 157 6 0 chr6 2751078 2751244 -186528310 + L1MC1 LINE L1 6055 6221 -112 276 299 11 0 chr6 2751343 2751430 -186528124 + MIR SINE MIR 78 165 -97 424 143 0 0 chr6 2751431 2751494 -186528060 + AluS SINE Alu 2 64 -245 256 200 210 10 chr6 2752357 2752457 -186527097 + MIR SINE MIR 50 169 -93 266 265 61 41 chr6 2752802 2752949 -186526605 + LTR16C LTR ERVL 332 481 -10 226 229 96 12 chr6 2753365 2753448 -186526106 - MER113 DNA MER1_type? -427 94 5 4738 28 0 0 chr6 2754599 2755139 -186524415 + L1PA3 LINE L1 5615 6154 -1 626 176 71 80 chr6 2755208 2755446 -186524108 + MER106A DNA MER1_type 1 236 0 1869 153 7 7 chr6 2757901 2758208 -186521346 + AluJb SINE Alu 1 307 -5 2340 92 0 49 chr6 2758229 2758555 -186520999 + AluSg SINE Alu 1 310 0 1761 149 3 34 chr6 2759606 2759901 -186519653 - AluJo SINE Alu -14 298 13 211 333 0 12 chr6 2760740 2760821 -186518733 - MIR SINE MIR -8 254 175 1238 174 26 15 chr6 2764454 2764718 -186514836 - L1MC3 LINE L1 0 7785 7519 777 259 117 0 chr6 2764718 2764992 -186514562 - L2 LINE L2 -793 2521 2216 3408 192 57 56 chr6 2765742 2766137 -186513417 + L1MB8 LINE L1 5109 5502 -676 976 111 0 15 chr6 2766137 2766272 -186513282 + FLAM_C SINE Alu 1 133 0 3408 192 57 56 chr6 2766272 2766942 -186512612 + L1MB8 LINE L1 5502 6178 0 550 243 186 0 chr6 2767532 2767709 -186511845 - L1MC4 LINE L1 -36 8006 7797 1163 157 17 0 chr6 2767793 2767994 -186511560 - AluJb SINE Alu 0 307 104 2682 240 101 13 chr6 2767996 2768931 -186510623 - L1MC4 LINE L1 -287 7602 6509 390 289 146 50 chr6 2769601 2769840 -186509714 + L1ME LINE L1 5491 5752 -369 417 264 96 34 chr6 2770141 2770319 -186509235 + MIR SINE MIR 8 196 -66 256 208 58 19 chr6 2770592 2770746 -186508808 + (TA)n Simple_repeat Simple_repeat 2 161 0 22 0 0 0 chr6 2770769 2770791 -186508763 + AT_rich Low_complexity Low_complexity 1 22 0 387 270 57 28 chr6 2770935 2771183 -186508371 - L1ME3A LINE L1 -205 5965 5711 388 258 110 53 chr6 2771223 2771370 -186508184 - L1ME3A LINE L1 -604 5558 5421 1532 183 48 14 chr6 2771370 2771665 -186507889 - AluJo SINE Alu -7 305 1 388 258 110 53 chr6 2771665 2771781 -186507773 - L1ME3A LINE L1 -741 5421 5280 304 289 21 14 chr6 2771808 2771950 -186507604 - L1ME3A LINE L1 -897 5249 5107 678 145 8 0 chr6 2772297 2772414 -186507140 - MER2 DNA MER2_type -135 210 93 710 107 0 0 chr6 2772422 2772525 -186507029 - MER2 DNA MER2_type -135 210 108 670 238 219 66 chr6 2772538 2772903 -186506651 - MER21B LTR ERV1 -425 438 18 318 322 35 17 chr6 2772923 2773097 -186506457 + L1M4 LINE L1 4248 4424 -1722 531 188 147 12 chr6 2773798 2773979 -186505575 - MIR SINE MIR -21 241 40 1844 129 7 7 chr6 2774172 2774450 -186505104 - AluSc SINE Alu -13 296 19 2855 203 130 32 chr6 2774901 2776090 -186503464 - pTR5 LTR ERV1 -22 1523 6 1924 92 73 7 chr6 2776123 2776395 -186503159 + AluSp SINE Alu 1 290 -23 599 170 30 15 chr6 2776529 2776664 -186502890 + FRAM SINE Alu 1 136 -40 23 33 0 0 chr6 2777441 2777471 -186502083 + GC_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr6 2777844 2777881 -186501673 + GC_rich Low_complexity Low_complexity 1 37 0 23 101 0 0 chr6 2778009 2778088 -186501466 + GC_rich Low_complexity Low_complexity 1 79 0 26 0 0 0 chr6 2778305 2778331 -186501223 + GC_rich Low_complexity Low_complexity 1 26 0 206 263 0 0 chr6 2778355 2778431 -186501123 + G-rich Low_complexity Low_complexity 30 105 0 21 36 0 0 chr6 2778490 2778518 -186501036 + GC_rich Low_complexity Low_complexity 1 28 0 186 319 18 26 chr6 2779417 2779530 -186500024 + L3 LINE CR1 1123 1234 -343 25 31 0 0 chr6 2781664 2781696 -186497858 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr6 2781721 2781746 -186497808 + AT_rich Low_complexity Low_complexity 1 25 0 1192 142 78 23 chr6 2783804 2784023 -186495531 + MER46A DNA MER2_type 1 231 -5 181 207 17 86 chr6 2784406 2784464 -186495090 + MER5A DNA MER1_type 130 183 -6 333 222 154 8 chr6 2784632 2784749 -186494805 + L2 LINE L2 3139 3272 0 22 0 0 0 chr6 2786400 2786422 -186493132 + AT_rich Low_complexity Low_complexity 1 22 0 1004 211 40 103 chr6 2786540 2786939 -186492615 - MLT1B LTR MaLR -16 374 1 713 269 20 10 chr6 2787181 2787382 -186492172 - MIR SINE MIR -6 256 54 22 80 0 0 chr6 2788251 2788301 -186491253 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr6 2789159 2789191 -186490363 + AT_rich Low_complexity Low_complexity 1 32 0 187 225 0 0 chr6 2790776 2790816 -186488738 - MIR SINE MIR -145 117 78 198 274 60 36 chr6 2790988 2791072 -186488482 + MIR3 SINE MIR 116 201 -7 213 280 11 32 chr6 2793169 2793262 -186486292 - MIR SINE MIR -49 213 123 651 198 142 6 chr6 2794078 2794240 -186485314 - MIR SINE MIR -71 191 8 267 315 36 0 chr6 2798510 2798621 -186480933 - HAL1 LINE L1 -702 1805 1691 661 293 168 19 chr6 2798663 2799080 -186480474 - HAL1 LINE L1 -620 1887 1409 321 143 89 0 chr6 2799083 2799139 -186480415 - HAL1 LINE L1 -1144 1363 1303 2137 98 0 25 chr6 2799140 2799457 -186480097 - AluSx SINE Alu -3 309 1 985 277 126 16 chr6 2799457 2800039 -186479515 - L2 LINE L2 -10 3303 2651 264 356 40 0 chr6 2800064 2800213 -186479341 - HAL1 LINE L1 -1879 628 474 533 287 62 14 chr6 2800299 2800508 -186479046 - HAL1 LINE L1 -2278 229 11 2036 123 0 16 chr6 2800539 2800855 -186478699 - AluSx SINE Alu -1 311 1 2688 29 0 0 chr6 2800887 2801197 -186478357 + AluYb8 SINE Alu 1 310 -8 2058 118 0 0 chr6 2801864 2802152 -186477402 + AluSx SINE Alu 1 288 -24 195 42 0 0 chr6 2802156 2802180 -186477374 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 406 226 96 78 chr6 2802840 2803070 -186476484 - LTR33 LTR ERVL -169 352 119 228 250 0 0 chr6 2803490 2803538 -186476016 + L2 LINE L2 3219 3266 -6 380 215 0 93 chr6 2803785 2803957 -186475597 - L1ME4a LINE L1 -3 6118 5963 309 51 0 0 chr6 2803961 2804000 -186475554 + (TG)n Simple_repeat Simple_repeat 1 39 0 2299 100 0 0 chr6 2804195 2804505 -186475049 - AluSx SINE Alu -2 310 1 465 294 166 5 chr6 2804606 2804817 -186474737 + MIR SINE MIR 15 259 -3 349 347 67 0 chr6 2805130 2805280 -186474274 - MIR SINE MIR 0 262 103 691 208 116 29 chr6 2805350 2805523 -186474031 - MER5A DNA MER1_type 0 189 2 245 219 74 12 chr6 2805867 2805949 -186473605 + MER91 DNA MER1_type 105 196 0 284 187 37 44 chr6 2807061 2807142 -186472412 + MIR3 SINE MIR 101 168 -40 1762 106 0 0 chr6 2807160 2807434 -186472120 + AluSg SINE Alu 46 319 0 226 361 62 0 chr6 2807582 2807679 -186471875 + MIR3 SINE MIR 83 185 -23 326 253 145 24 chr6 2808473 2808639 -186470915 + MER5A DNA MER1_type 1 186 -3 2406 62 0 3 chr6 2808644 2808950 -186470604 + AluY SINE Alu 1 305 -6 761 65 9 0 chr6 2810106 2810214 -186469340 + (TCC)n Simple_repeat Simple_repeat 1 109 0 327 270 73 64 chr6 2810932 2811165 -186468389 + MLT1K LTR MaLR 351 585 -3 2236 107 0 0 chr6 2811330 2811640 -186467914 - AluSx SINE Alu -2 310 1 188 220 119 0 chr6 2811873 2811932 -186467622 + MIR3 SINE MIR 3 68 -140 209 188 21 21 chr6 2812351 2812399 -186467155 - L3b LINE CR1 -8 1575 1528 2627 185 8 4 chr6 2812790 2813260 -186466294 - MER70A LTR ERVL 0 472 1 1819 185 49 3 chr6 2813266 2813762 -186465792 - MER70A-int LTR ERVL 0 5023 4469 28 0 0 0 chr6 2813762 2813790 -186465764 + AT_rich Low_complexity Low_complexity 1 28 0 3494 5 0 0 chr6 2813790 2814173 -186465381 - L1HS LINE L1 -3 6152 5770 14246 176 54 28 chr6 2814176 2815537 -186464017 - MER70A-int LTR ERVL -549 4474 3150 255 216 0 0 chr6 2815537 2815588 -186463966 + MER9 LTR ERVK 461 511 0 14246 176 54 28 chr6 2815588 2816957 -186462597 - MER70A-int LTR ERVL -1873 3150 1621 2271 160 76 10 chr6 2816957 2817251 -186462303 - MER70A-int LTR ERVL -3832 1191 918 1772 192 27 0 chr6 2817251 2817579 -186461975 - MER1B DNA MER1_type 0 337 1 2271 160 76 10 chr6 2817579 2818064 -186461490 - MER70A-int LTR ERVL -4105 918 467 372 22 0 0 chr6 2818064 2818109 -186461445 + (TG)n Simple_repeat Simple_repeat 2 46 0 2271 160 76 10 chr6 2818109 2818294 -186461260 - MER70A-int LTR ERVL -4556 467 1 966 149 19 91 chr6 2818294 2818462 -186461092 - MER70A LTR ERVL 0 472 320 4176 142 23 34 chr6 2818462 2819195 -186460359 + LTR8A LTR ERV1 1 725 -2 966 149 19 91 chr6 2819195 2819234 -186460320 - MER70A LTR ERVL -152 320 280 602 256 30 24 chr6 2819268 2819436 -186460118 + HAL1 LINE L1 539 707 -1800 275 272 25 12 chr6 2819444 2819525 -186460029 + HAL1 LINE L1 745 826 -1681 1099 253 80 26 chr6 2819562 2819949 -186459605 + HAL1 LINE L1 1404 1811 -696 458 216 18 9 chr6 2820106 2820217 -186459337 + HAL1 LINE L1 1690 1801 -706 3242 154 131 37 chr6 2820272 2820411 -186459143 + L1MA9 LINE L1 5483 5608 -704 1794 163 20 3 chr6 2820411 2820717 -186458837 + AluJo SINE Alu 1 311 -1 3242 154 131 37 chr6 2820717 2821331 -186458223 + L1MA9 LINE L1 5608 6307 -5 625 257 151 29 chr6 2821342 2821759 -186457795 + HAL1 LINE L1 1812 2279 -228 929 192 33 23 chr6 2823562 2823776 -186455778 - MER20 DNA MER1_type -3 216 1 234 295 0 0 chr6 2823783 2823844 -186455710 + (TA)n Simple_repeat Simple_repeat 2 62 0 766 208 36 24 chr6 2823859 2824027 -186455527 + MER6B DNA MER2_type 41 210 0 283 279 12 0 chr6 2824028 2824114 -186455440 + (TA)n Simple_repeat Simple_repeat 1 87 0 405 181 0 0 chr6 2824114 2824186 -186455368 + MER116 DNA Mariner 5 76 -4 248 239 136 34 chr6 2824374 2824462 -186455092 + MIR SINE MIR 137 233 -29 2313 103 0 0 chr6 2824704 2825015 -186454539 + AluSx SINE Alu 1 311 -1 749 254 83 8 chr6 2825052 2825304 -186454250 - L1ME1 LINE L1 -5 6161 5891 2210 55 4 0 chr6 2825310 2825583 -186453971 - AluY SINE Alu -10 301 28 274 275 0 0 chr6 2825687 2825756 -186453798 - AluS SINE Alu -231 69 1 2145 176 72 133 chr6 2825759 2826075 -186453479 - L1ME2 LINE L1 -267 5897 5564 854 159 0 0 chr6 2826075 2826207 -186453347 + FLAM_C SINE Alu 2 133 0 2145 176 72 133 chr6 2826207 2826519 -186453035 - L1ME2 LINE L1 -600 5564 5235 1222 183 5 0 chr6 2826519 2826733 -186452821 + L1PB4 LINE L1 5935 6154 -2 2145 176 72 133 chr6 2826733 2827357 -186452197 - L1ME2 LINE L1 -929 5235 4724 760 200 0 0 chr6 2827364 2827489 -186452065 + FLAM_C SINE Alu 3 127 -16 7296 214 46 48 chr6 2827494 2828234 -186451320 - L1ME2 LINE L1 -1414 4732 3993 189 0 0 0 chr6 2828234 2828255 -186451299 + (TTTC)n Simple_repeat Simple_repeat 2 22 0 1547 183 4 0 chr6 2828257 2828531 -186451023 - AluJo SINE Alu -26 286 12 7296 214 46 48 chr6 2828531 2830070 -186449484 - L1ME2 LINE L1 -2154 3992 2453 2072 135 0 0 chr6 2831980 2832291 -186447263 + L1PA16 LINE L1 5483 5793 -373 413 137 14 0 chr6 2832291 2832361 -186447193 + L1PA16 LINE L1 6077 6150 -16 565 285 131 0 chr6 2832412 2832626 -186446928 + MIR SINE MIR 20 261 -1 295 206 11 0 chr6 2833317 2833397 -186446157 + L1ME3A LINE L1 6007 6091 -79 2071 126 0 0 chr6 2833519 2833829 -186445725 + AluY SINE Alu 1 310 -1 337 319 120 57 chr6 2834243 2834626 -186444928 - L1M4 LINE L1 -989 5157 4751 608 311 175 10 chr6 2834649 2835260 -186444294 - L1M4 LINE L1 -1448 4698 3987 683 258 36 22 chr6 2835379 2835443 -186444111 + L1ME2 LINE L1 5728 5790 -376 2055 214 0 0 chr6 2835443 2835808 -186443746 + MLT1A1 LTR MaLR 1 365 0 683 258 36 22 chr6 2835808 2835968 -186443586 + L1ME2 LINE L1 5790 5955 -211 381 288 61 0 chr6 2835975 2836107 -186443447 + L1ME2 LINE L1 6015 6154 -10 694 302 202 30 chr6 2836173 2836469 -186443085 + L2 LINE L2 1830 2074 -1240 2357 63 0 13 chr6 2836469 2836770 -186442784 - AluY SINE Alu -14 297 1 694 302 202 30 chr6 2836770 2837260 -186442294 + L2 LINE L2 2074 2751 -563 35 24 0 0 chr6 2837276 2837318 -186442236 + AT_rich Low_complexity Low_complexity 1 42 0 1727 94 0 84 chr6 2837318 2837398 -186442156 + AluSx SINE Alu 50 135 -177 2169 94 0 0 chr6 2837398 2837684 -186441870 + AluY SINE Alu 1 286 -25 1727 94 0 84 chr6 2837684 2837890 -186441664 + AluSx SINE Alu 135 312 0 1175 101 0 0 chr6 2837890 2838049 -186441505 + AluSg/x SINE Alu 134 292 -20 198 255 64 0 chr6 2838812 2838859 -186440695 + MIR SINE MIR 129 178 -84 713 122 0 0 chr6 2839049 2839147 -186440407 + AluJ/FLAM SINE Alu 2 99 -213 1975 122 0 0 chr6 2839166 2839453 -186440101 + AluSx SINE Alu 21 307 -5 24 32 0 0 chr6 2839458 2839489 -186440065 + AT_rich Low_complexity Low_complexity 1 31 0 424 265 59 73 chr6 2839806 2840146 -186439408 - L1M4 LINE L1 -934 5212 4878 244 261 34 67 chr6 2840182 2840301 -186439253 + MER94 DNA DNA 6 120 -14 877 261 124 57 chr6 2840334 2840527 -186439027 - L1M4 LINE L1 -1307 4839 4660 2398 81 0 0 chr6 2840527 2840835 -186438719 + AluSg SINE Alu 1 308 -2 877 261 124 57 chr6 2840835 2840934 -186438620 - L1M4 LINE L1 -1486 4660 4569 1691 133 36 30 chr6 2840934 2841235 -186438319 - AluJo SINE Alu -9 303 1 877 261 124 57 chr6 2841235 2841661 -186437893 - L1M4 LINE L1 -1577 4569 4072 277 301 14 27 chr6 2841672 2841818 -186437736 - L1MDa LINE L1 -3630 2499 2356 380 229 144 65 chr6 2841978 2842284 -186437270 - L1MDa LINE L1 -3809 2320 2031 563 281 124 42 chr6 2842448 2842930 -186436624 - L1MDa LINE L1 -4433 1696 1233 1641 173 3 10 chr6 2842971 2843260 -186436294 + AluJo SINE Alu 2 288 -24 22 35 0 0 chr6 2843260 2843289 -186436265 + AT_rich Low_complexity Low_complexity 1 29 0 710 279 96 100 chr6 2843289 2843891 -186435663 - L1MDa LINE L1 -4949 1170 571 293 297 20 10 chr6 2844318 2844419 -186435135 + MIR SINE MIR 50 151 -57 2253 115 0 0 chr6 2844928 2845240 -186434314 + AluSx SINE Alu 1 312 0 230 136 23 0 chr6 2846646 2846690 -186432864 + (TCCA)n Simple_repeat Simple_repeat 4 48 0 869 170 7 0 chr6 2846701 2846991 -186432563 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 418 211 138 24 chr6 2847187 2847310 -186432244 + MIR SINE MIR 125 261 -1 744 184 0 22 chr6 2847959 2848095 -186431459 + FLAM_A SINE Alu 1 133 0 824 193 0 0 chr6 2849113 2849258 -186430296 + AluJb SINE Alu 138 282 -30 206 32 32 0 chr6 2849262 2849293 -186430261 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2119 111 0 19 chr6 2849666 2849981 -186429573 - AluSx SINE Alu 0 312 4 367 226 0 29 chr6 2850541 2850643 -186428911 - L1MB2 LINE L1 0 6171 6073 419 244 38 53 chr6 2852533 2852664 -186426890 + L2 LINE L2 3184 3312 -1 22 0 0 0 chr6 2853510 2853532 -186426022 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr6 2853959 2853979 -186425575 + (TCCC)n Simple_repeat Simple_repeat 3 22 0 21 0 0 0 chr6 2854171 2854192 -186425362 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr6 2854325 2854347 -186425207 + GC_rich Low_complexity Low_complexity 1 22 0 824 196 40 67 chr6 2854691 2854916 -186424638 - MLT1A1 LTR MaLR -146 219 1 7751 203 45 40 chr6 2854916 2856644 -186422910 - MLT1A1-int LTR MaLR 0 1735 1 1365 179 56 88 chr6 2856644 2857018 -186422536 - MLT1A1 LTR MaLR 0 365 4 573 232 149 28 chr6 2857054 2857235 -186422319 + MLT1A1 LTR MaLR 163 365 0 202 80 40 40 chr6 2857717 2857767 -186421787 + T-rich Low_complexity Low_complexity 3 52 0 21 0 0 0 chr6 2857770 2857791 -186421763 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr6 2857966 2858005 -186421549 + AT_rich Low_complexity Low_complexity 1 39 0 1381 141 4 13 chr6 2858006 2858233 -186421321 + AluJo SINE Alu 87 311 -1 2134 111 6 19 chr6 2858489 2858805 -186420749 - AluSx SINE Alu 0 312 1 556 279 298 11 chr6 2859077 2859453 -186420101 + L2 LINE L2 2830 3313 0 1042 323 91 29 chr6 2859725 2859802 -186419752 + L3 LINE CR1 445 516 -1061 2346 70 3 0 chr6 2859802 2860100 -186419454 + AluSp SINE Alu 1 299 -14 1042 323 91 29 chr6 2860100 2860135 -186419419 + L3 LINE CR1 516 547 -1030 2171 109 0 0 chr6 2860135 2860437 -186419117 + AluSx SINE Alu 2 303 -9 1042 323 91 29 chr6 2860437 2860951 -186418603 + L3 LINE CR1 547 1111 -466 393 328 61 15 chr6 2861049 2861247 -186418307 + MIR SINE MIR 1 207 -55 2039 87 23 33 chr6 2861938 2862228 -186417326 + AluSx SINE Alu 1 289 -23 198 0 0 0 chr6 2862228 2862250 -186417304 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 1817 106 92 3 chr6 2862522 2862804 -186416750 - AluSx SINE Alu -5 307 1 1610 154 0 52 chr6 2862881 2863186 -186416368 - AluJo SINE Alu -14 298 10 502 271 40 20 chr6 2863257 2863408 -186416146 - MER21B LTR ERV1 -612 251 98 456 221 0 0 chr6 2863447 2863524 -186416030 - MER21B LTR ERV1 -769 94 18 1946 101 3 39 chr6 2863524 2863722 -186415832 - AluSq SINE Alu 0 313 140 2015 121 0 13 chr6 2863722 2864036 -186415518 - AluSx SINE Alu -2 310 1 1946 101 3 39 chr6 2864036 2864172 -186415382 - AluSq SINE Alu -173 140 1 208 344 52 31 chr6 2864267 2864363 -186415191 - MIR3 SINE MIR -45 163 66 230 207 8 107 chr6 2865709 2865830 -186413724 + C-rich Low_complexity Low_complexity 5 113 0 404 192 22 82 chr6 2865877 2866059 -186413495 + CT-rich Low_complexity Low_complexity 2 172 0 890 194 29 0 chr6 2866138 2866313 -186413241 - L1MC3 LINE L1 -391 7394 7215 334 113 42 28 chr6 2866323 2866394 -186413160 - L1MC3 LINE L1 -1310 6475 6404 2167 108 0 3 chr6 2868828 2869133 -186410421 - AluSx SINE Alu -8 304 1 219 69 0 0 chr6 2870661 2870690 -186408864 + (CCCCCT)n Simple_repeat Simple_repeat 4 32 0 2048 125 0 0 chr6 2870734 2871031 -186408523 - AluSg SINE Alu -13 297 1 256 308 58 58 chr6 2871261 2871365 -186408189 - L2 LINE L2 -11 3261 3158 207 272 53 88 chr6 2871700 2871814 -186407740 + MIR SINE MIR 92 201 -61 2902 161 28 19 chr6 2871822 2872364 -186407190 + L1MA9 LINE L1 5476 6022 -290 7493 140 75 116 chr6 2872364 2874128 -186405426 + pTR5 LTR ERV1 743 2433 -5 550 235 68 8 chr6 2874173 2874305 -186405249 + AluSg/x SINE Alu 146 285 -25 1201 196 44 18 chr6 2874305 2874500 -186405054 + L1MA9 LINE L1 6031 6236 -76 2016 128 87 16 chr6 2874500 2874867 -186404687 + MSTD LTR MaLR 4 396 0 1201 196 44 18 chr6 2874867 2874946 -186404608 + L1MA9 LINE L1 6236 6312 0 1818 159 26 100 chr6 2875648 2876069 -186403485 - MLT1B LTR MaLR 0 390 1 1655 98 0 21 chr6 2876664 2876900 -186402654 + AluSx SINE Alu 1 231 -81 201 74 0 0 chr6 2876911 2876938 -186402616 + (GAAAA)n Simple_repeat Simple_repeat 3 29 0 180 227 15 45 chr6 2877521 2877587 -186401967 + L2 LINE L2 3171 3234 -79 287 181 0 36 chr6 2877672 2877755 -186401799 + C-rich Low_complexity Low_complexity 4 83 0 1709 149 4 4 chr6 2877772 2878048 -186401506 - AluJb SINE Alu -34 278 3 1165 206 124 65 chr6 2878051 2878463 -186401091 + LTR56 LTR ERV1 10 445 0 557 200 30 0 chr6 2878547 2878647 -186400907 + MER21B LTR ERV1 2 104 -759 1850 225 112 34 chr6 2878707 2879235 -186400319 + MER21B LTR ERV1 214 782 -81 645 173 39 0 chr6 2879326 2879430 -186400124 - FLAM_C SINE Alu -34 109 2 430 309 140 40 chr6 2879495 2879867 -186399687 + L1ME4a LINE L1 4981 5389 -757 332 359 38 11 chr6 2879902 2880086 -186399468 + L1ME4a LINE L1 5699 5887 -234 299 268 147 47 chr6 2880220 2880519 -186399035 + L1MC4 LINE L1 7525 7853 -189 878 82 8 0 chr6 2880632 2880754 -186398800 - AluY SINE Alu -19 292 170 296 233 124 32 chr6 2880755 2880976 -186398578 - L1MEc LINE L1 -5226 1721 1356 285 261 11 22 chr6 2881098 2881190 -186398364 - L1MEc LINE L1 -6269 869 779 205 371 114 0 chr6 2881280 2881385 -186398169 - MER5A DNA MER1_type -69 120 4 212 328 33 0 chr6 2881409 2881470 -186398084 + MER5B DNA MER1_type 26 88 -90 5683 188 88 56 chr6 2881499 2883037 -186396517 - pTR5 LTR ERV1 -157 2210 31 243 154 39 58 chr6 2883259 2883311 -186396243 - MER5B DNA MER1_type -127 51 1 234 259 19 0 chr6 2883311 2883363 -186396191 + MIR3 SINE MIR 153 205 -3 30 27 0 0 chr6 2883773 2883810 -186395744 + AT_rich Low_complexity Low_complexity 1 37 0 198 342 0 26 chr6 2883898 2883974 -186395580 - MIR SINE MIR -85 123 50 2071 133 0 0 chr6 2883977 2884286 -186395268 + AluSg SINE Alu 1 309 -1 798 288 125 16 chr6 2884483 2884797 -186394757 - MLT1I LTR MaLR 0 409 61 2220 123 18 47 chr6 2884797 2885178 -186394376 - THE1C LTR MaLR 0 375 6 278 213 16 16 chr6 2885209 2885270 -186394284 - MLT1I LTR MaLR -344 65 5 1773 136 9 28 chr6 2886123 2886440 -186393114 + AluJb SINE Alu 1 311 -1 542 300 106 25 chr6 2886451 2886688 -186392866 - MIR SINE MIR 0 262 7 1764 87 23 4 chr6 2887975 2888240 -186391314 + AluSx SINE Alu 1 270 -42 189 0 0 0 chr6 2888244 2888265 -186391289 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 38 89 0 0 chr6 2888483 2888584 -186390970 + GC_rich Low_complexity Low_complexity 1 101 0 13965 187 35 57 chr6 2889273 2895251 -186384303 + L1P5 LINE L1 6 6067 -800 2272 107 0 0 chr6 2895251 2895561 -186383993 + AluSg SINE Alu 1 310 0 13965 187 35 57 chr6 2895561 2895993 -186383561 + L1P5 LINE L1 6067 6507 -360 313 244 49 0 chr6 2896041 2896123 -186383431 + MLT1J1 LTR MaLR 350 435 -11 539 304 212 23 chr6 2896460 2896931 -186382623 - L2 LINE L2 -930 2384 1825 993 173 37 6 chr6 2897095 2897257 -186382297 - FAM SINE Alu -8 167 1 245 163 38 50 chr6 2897314 2897394 -186382160 + L1MB2 LINE L1 5309 5387 -2421 449 309 69 88 chr6 2897572 2897947 -186381607 - L1ME4a LINE L1 0 6121 5754 203 170 21 0 chr6 2897998 2898045 -186381509 + CT-rich Low_complexity Low_complexity 3 50 0 311 157 100 0 chr6 2898051 2898121 -186381433 + L1MB2 LINE L1 6088 6164 -7 314 312 109 18 chr6 2898152 2898373 -186381181 - L1ME4a LINE L1 -2099 5709 5469 2474 139 43 26 chr6 2898419 2898842 -186380712 - MSTB1 LTR MaLR 0 432 3 486 340 59 86 chr6 2898979 2899470 -186380084 + L1M4 LINE L1 4207 4684 -1462 2143 141 3 3 chr6 2899960 2900266 -186379288 + AluSx SINE Alu 1 306 -6 518 196 9 9 chr6 2900273 2900385 -186379169 + MER50 LTR ERV1 493 604 -130 4116 144 21 32 chr6 2900475 2901251 -186378303 + L1MB5 LINE L1 5408 6174 0 230 323 0 0 chr6 2901720 2901782 -186377772 + L2 LINE L2 3194 3255 -17 2646 35 0 7 chr6 2901809 2902119 -186377435 + AluY SINE Alu 1 308 -3 389 269 0 10 chr6 2903773 2903877 -186375677 - MIR SINE MIR 0 262 160 224 317 48 28 chr6 2903994 2904139 -186375415 - MIR3 SINE MIR -59 149 2 225 0 0 0 chr6 2904501 2904526 -186375028 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr6 2905019 2905041 -186374513 + AT_rich Low_complexity Low_complexity 1 22 0 589 67 48 0 chr6 2905573 2905677 -186373877 + (TA)n Simple_repeat Simple_repeat 1 109 0 1868 130 66 36 chr6 2907200 2907501 -186372053 - AluSx SINE Alu -2 310 1 225 209 9 19 chr6 2907692 2907797 -186371757 + GA-rich Low_complexity Low_complexity 2 105 0 724 124 133 0 chr6 2908263 2908376 -186371178 + FLAM_C SINE Alu 1 128 -5 457 294 94 85 chr6 2908967 2909302 -186370252 + L1M4 LINE L1 2584 2915 -3231 1888 155 55 0 chr6 2909302 2909593 -186369961 + AluJo SINE Alu 1 307 -5 457 294 94 85 chr6 2909593 2909628 -186369926 + L1M4 LINE L1 2915 2948 -3198 2305 118 0 0 chr6 2909628 2909932 -186369622 + AluSx SINE Alu 1 304 -8 457 294 94 85 chr6 2909932 2910181 -186369373 + L1M4 LINE L1 2948 3223 -2923 1095 134 0 41 chr6 2910352 2910555 -186368999 + AluSg/x SINE Alu 121 316 0 2414 81 10 0 chr6 2910980 2911276 -186368278 + AluY SINE Alu 1 299 -12 243 326 71 0 chr6 2911277 2911418 -186368136 + L1ME4a LINE L1 5970 6120 -1 2292 145 18 43 chr6 2911666 2912108 -186367446 + MER65A LTR ERV1 12 442 -3 396 0 0 0 chr6 2913332 2913376 -186366178 + (CA)n Simple_repeat Simple_repeat 1 44 0 183 80 0 0 chr6 2913807 2913832 -186365722 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2100 123 16 10 chr6 2914973 2915282 -186364272 - AluSx SINE Alu -1 311 1 615 228 69 0 chr6 2916704 2916849 -186362705 - MER96 DNA MER1_type? -1 174 20 1638 208 1 61 chr6 2916849 2917275 -186362279 - L1MB7 LINE L1 -2 6182 5776 859 258 10 7 chr6 2917274 2917576 -186361978 + L1M4 LINE L1 2903 3205 -2941 * 2252 115 3 0 chr6 2917590 2917885 -186361669 - AluSx SINE Alu -16 296 1 200 321 79 21 chr6 2918820 2918960 -186360594 - L2 LINE L2 0 3272 3125 1132 168 162 70 chr6 2919116 2919431 -186360123 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 2919615 2919717 -186359837 + (TG)n Simple_repeat Simple_repeat 1 100 0 287 251 16 8 chr6 2919738 2919999 -186359555 + (TG)n Simple_repeat Simple_repeat 1 263 0 420 271 0 25 chr6 2920080 2920410 -186359144 + (TG)n Simple_repeat Simple_repeat 1 321 0 270 239 6 12 chr6 2920429 2920592 -186358962 + (TG)n Simple_repeat Simple_repeat 1 162 0 8253 67 1 0 chr6 2921131 2922099 -186357455 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 2922612 2922917 -186356637 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 2923278 2923495 -186356059 - MER20 DNA MER1_type 0 219 4 2460 84 7 3 chr6 2924585 2924893 -186354661 + AluSx SINE Alu 1 309 -3 579 170 54 48 chr6 2925001 2925148 -186354406 + MLT1D LTR MaLR 1 148 -357 1437 60 27 0 chr6 2925486 2925671 -186353883 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 2925965 2926511 -186353043 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 2926557 2926873 -186352681 + MLT1D LTR MaLR 130 505 0 231 355 167 21 chr6 2926979 2927165 -186352389 - MIR SINE MIR -37 225 13 2309 98 7 0 chr6 2927275 2927572 -186351982 - AluSx SINE Alu -13 299 1 2125 144 0 0 chr6 2928052 2928350 -186351204 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 2929706 2929735 -186349819 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 2930050 2930180 -186349374 + FLAM_A SINE Alu 2 130 -3 3383 147 37 35 chr6 2930901 2931058 -186348496 + MER41B LTR ERV1 1 156 -479 1752 165 7 20 chr6 2931058 2931361 -186348193 + AluJo SINE Alu 1 299 -13 3383 147 37 35 chr6 2931361 2931829 -186347725 + MER41B LTR ERV1 156 627 -8 1498 71 0 5 chr6 2932207 2932403 -186347151 - MER4E LTR ERV1 0 779 585 21 36 0 0 chr6 2932656 2932684 -186346870 + GC_rich Low_complexity Low_complexity 1 28 0 2830 86 30 92 chr6 2932735 2933428 -186346126 + SVA Other Other 393 868 -555 1458 101 6 60 chr6 2933441 2933777 -186345777 + SVA Other Other 549 866 -520 6559 71 3 60 chr6 2933843 2934855 -186344699 + SVA Other Other 433 1386 0 1273 99 117 9 chr6 2934872 2935085 -186344469 - MER4B LTR ERV1 -183 427 192 337 174 14 0 chr6 2935100 2935169 -186344385 - AluSp/q SINE Alu -3 300 231 200 321 79 21 chr6 2935369 2935509 -186344045 - L2 LINE L2 0 3272 3125 1141 175 156 63 chr6 2935665 2935980 -186343574 - MER2 DNA MER2_type 0 344 1 301 186 0 20 chr6 2936164 2936266 -186343288 + (TG)n Simple_repeat Simple_repeat 1 100 0 305 239 12 20 chr6 2936287 2936548 -186343006 + (TG)n Simple_repeat Simple_repeat 1 258 0 420 271 0 25 chr6 2936629 2936959 -186342595 + (TG)n Simple_repeat Simple_repeat 1 321 0 234 245 6 13 chr6 2936978 2937137 -186342417 + (TG)n Simple_repeat Simple_repeat 1 158 0 8253 67 1 0 chr6 2937676 2938644 -186340910 + LTR5 LTR ERVK 1 969 0 2368 112 0 0 chr6 2939157 2939462 -186340092 + AluSx SINE Alu 1 305 -7 993 212 14 18 chr6 2939823 2940040 -186339514 - MER20 DNA MER1_type 0 219 4 2468 84 7 3 chr6 2941130 2941439 -186338115 + AluSx SINE Alu 1 310 -2 579 170 54 48 chr6 2941549 2941696 -186337858 + MLT1D LTR MaLR 1 148 -357 1322 76 32 5 chr6 2942034 2942219 -186337335 - L1PA4 LINE L1 -1 6154 5965 3177 134 112 2 chr6 2942513 2943059 -186336495 - MER4B LTR ERV1 -4 606 1 1127 187 196 6 chr6 2943105 2943421 -186336133 + MLT1D LTR MaLR 130 505 0 236 355 167 21 chr6 2943527 2943713 -186335841 - MIR SINE MIR -37 225 13 2318 97 7 0 chr6 2943823 2944121 -186335433 - AluSx SINE Alu -12 300 1 2138 141 0 0 chr6 2944601 2944899 -186334655 - AluSx SINE Alu -14 298 1 186 103 0 0 chr6 2946254 2946283 -186333271 + (CA)n Simple_repeat Simple_repeat 2 30 0 739 200 0 8 chr6 2946598 2946728 -186332826 + FLAM_A SINE Alu 2 130 -3 3578 139 37 35 chr6 2947449 2947606 -186331948 + MER41B LTR ERV1 1 156 -479 1603 165 7 20 chr6 2947606 2947909 -186331645 + AluJo SINE Alu 1 299 -13 3578 139 37 35 chr6 2947909 2948377 -186331177 + MER41B LTR ERV1 156 627 -8 3117 107 26 32 chr6 2948755 2949163 -186330391 - MER4B LTR ERV1 0 779 201 1946 97 29 42 chr6 2949163 2949472 -186330082 - AluSx SINE Alu -7 305 1 3117 107 26 32 chr6 2949472 2949672 -186329882 - MER4B LTR ERV1 -578 201 1 2174 191 48 0 chr6 2950166 2950606 -186328948 - LOR1b LTR ERV1 0 461 1 530 130 11 22 chr6 2950606 2950698 -186328856 - LOR1b-int LTR ERV1 0 8120 8030 * 1638 141 8 4 chr6 2950697 2950960 -186328594 - MER41D-int LTR ERV1 -2056 6064 5801 * 33066 101 37 24 chr6 2950950 2954884 -186324670 - MER41D-int LTR ERV1 -2596 5524 1640 2810 193 43 55 chr6 2954884 2955718 -186323836 - LTR5 LTR ERVK -145 824 1 33066 101 37 24 chr6 2955718 2956504 -186323050 - MER41D-int LTR ERV1 -6480 1640 730 9203 40 2 3 chr6 2956504 2957574 -186321980 + MER11C LTR ERVK 1 1069 -2 33066 101 37 24 chr6 2957574 2958098 -186321456 - MER41D-int LTR ERV1 -7390 730 214 1945 117 34 0 chr6 2958098 2958396 -186321158 + AluSx SINE Alu 1 308 -4 601 170 0 45 chr6 2958455 2958491 -186321063 - FRAM SINE Alu -183 129 93 2818 168 17 73 chr6 2958491 2958858 -186320696 - MER41D LTR ERV1 0 557 234 2018 104 0 7 chr6 2958858 2959146 -186320408 + AluSg SINE Alu 1 286 -24 2818 168 17 73 chr6 2959146 2959368 -186320186 - MER41D LTR ERV1 -323 234 1 601 170 0 45 chr6 2959368 2959443 -186320111 - FRAM SINE Alu -219 93 23 494 207 224 62 chr6 2959531 2959595 -186319959 - Charlie7 DNA MER1_type -586 2026 1974 2040 120 3 3 chr6 2959595 2959904 -186319650 - AluSx SINE Alu -3 309 1 494 207 224 62 chr6 2959904 2960192 -186319362 - Charlie7 DNA MER1_type -638 1974 1617 323 213 16 0 chr6 2960643 2960704 -186318850 - MER94 DNA DNA -1 133 72 324 118 118 0 chr6 2960827 2960895 -186318659 - LTR50 LTR ERVL -7 788 713 1874 147 3 3 chr6 2961974 2962280 -186317274 - AluSx SINE Alu -6 306 1 2136 107 3 3 chr6 2962520 2962828 -186316726 + AluSg SINE Alu 1 308 -2 311 152 0 0 chr6 2963172 2963218 -186316336 + Alu SINE Alu 252 297 -11 1576 237 57 0 chr6 2963735 2964191 -186315363 - MER114 LTR ERV -121 527 46 742 255 13 0 chr6 2964206 2964363 -186315191 - MER45A DNA AcHobo 0 178 20 605 184 9 9 chr6 2964565 2964679 -186314875 - MLT1A2 LTR MaLR 0 374 261 7713 154 73 68 chr6 2964679 2966357 -186313197 + pTR5 LTR ERV1 743 2429 -9 230 187 67 53 chr6 2966627 2966702 -186312852 - L1MA7 LINE L1 -4 6287 6212 2241 124 29 9 chr6 2966702 2967048 -186312506 - LTR1 LTR ERV1 0 785 433 1378 158 12 116 chr6 2967064 2967399 -186312155 - LTR1 LTR ERV1 -462 323 24 388 123 92 0 chr6 2967434 2967499 -186312055 - L1MA8 LINE L1 -76 6215 6145 291 294 165 0 chr6 2967499 2967608 -186311946 + MER50 LTR ERV1 1 127 -607 820 266 122 42 chr6 2967671 2968017 -186311537 + MER50 LTR ERV1 105 490 -244 2076 115 3 0 chr6 2968017 2968312 -186311242 + AluY SINE Alu 1 296 -15 820 266 122 42 chr6 2968312 2968374 -186311180 + MER50 LTR ERV1 490 546 -188 4299 174 67 59 chr6 2968439 2969819 -186309735 + pTR5 LTR ERV1 724 2436 -2 22 0 0 0 chr6 2969924 2969946 -186309608 + AT_rich Low_complexity Low_complexity 1 22 0 583 226 24 8 chr6 2970001 2970125 -186309429 + FLAM_A SINE Alu 4 129 -4 877 128 101 13 chr6 2970208 2970357 -186309197 - MER44D DNA MER2_type 0 605 444 844 89 0 0 chr6 2970414 2970527 -186309027 - MER4E LTR ERV1 -14 765 485 3101 123 161 21 chr6 2970532 2971110 -186308444 - MER4D LTR ERV1 -237 666 8 2267 87 3 0 chr6 2971110 2971409 -186308145 + AluSp SINE Alu 1 300 -13 421 211 120 49 chr6 2971425 2971463 -186308091 - MER44D DNA MER2_type -2069 422 388 2097 90 10 3 chr6 2971463 2971751 -186307803 + AluSq SINE Alu 1 290 -23 421 211 120 49 chr6 2971751 2971766 -186307788 - MER44D DNA MER2_type -2103 388 375 213 39 0 0 chr6 2971766 2971792 -186307762 + (TC)n Simple_repeat Simple_repeat 1 26 0 421 211 120 49 chr6 2971792 2971879 -186307675 - MER44D DNA MER2_type -2116 375 1 1851 180 50 40 chr6 2971899 2972343 -186307211 + MER83 LTR ERV1 1 448 0 2084 125 0 6 chr6 2972740 2973053 -186306501 + AluSx SINE Alu 1 311 -1 1728 144 3 11 chr6 2974567 2974871 -186304683 + AluSx SINE Alu 1 302 0 2238 87 0 0 chr6 2975465 2975764 -186303790 + AluY SINE Alu 1 299 -12 989 95 15 7 chr6 2975773 2975910 -186303644 + AluSg SINE Alu 1 138 -172 2113 103 0 19 chr6 2975911 2976222 -186303332 + AluSx SINE Alu 1 305 -7 1263 310 170 13 chr6 2978232 2979263 -186300291 + L2 LINE L2 2094 3290 -23 2197 95 0 0 chr6 2979270 2979564 -186299990 + AluSx SINE Alu 6 299 -13 183 194 0 0 chr6 2979564 2979595 -186299959 + L2 LINE L2 3240 3270 -2 588 250 83 46 chr6 2979988 2980118 -186299436 - MER58A DNA MER1_type -2196 224 81 2160 113 0 0 chr6 2980118 2980429 -186299125 + AluSq SINE Alu 1 311 -2 588 250 83 46 chr6 2980429 2980514 -186299040 - MER58A DNA MER1_type -2339 81 1 314 163 101 93 chr6 2980877 2981006 -186298548 + MLT1J LTR MaLR 209 338 -173 201 291 18 0 chr6 2981585 2981640 -186297914 - L2 LINE L2 -2 3270 3215 1740 161 3 35 chr6 2982566 2982788 -186296766 + AluJo SINE Alu 1 212 -100 1908 115 0 11 chr6 2982788 2983066 -186296488 + AluSc SINE Alu 23 297 -12 1740 161 3 35 chr6 2983066 2983154 -186296400 + AluJo SINE Alu 212 301 -11 2209 114 0 0 chr6 2983925 2984233 -186295321 + AluSx SINE Alu 1 308 -4 2160 89 7 0 chr6 2984812 2985105 -186294449 + AluSx SINE Alu 1 295 -17 531 210 185 107 chr6 2985304 2985557 -186293997 + MLT1H1 LTR MaLR 66 298 -257 2295 77 3 0 chr6 2985557 2985854 -186293700 + AluSp SINE Alu 1 298 -15 531 210 185 107 chr6 2985854 2986048 -186293506 + MLT1H1 LTR MaLR 298 548 -7 292 260 0 13 chr6 2986063 2986140 -186293414 + MLT1H1-int LTR MaLR 15 90 -1281 252 224 138 0 chr6 2986291 2986349 -186293205 + MLT1H1-int LTR MaLR 476 541 -830 1737 171 13 0 chr6 2987023 2987321 -186292233 + MLT1B LTR MaLR 1 302 -88 1051 221 71 24 chr6 2989741 2990189 -186289365 + MLT1D LTR MaLR 1 505 0 695 156 25 8 chr6 2990917 2991039 -186288515 - AluJb SINE Alu -187 125 2 448 277 161 0 chr6 2991419 2991574 -186287980 + MIR3 SINE MIR 20 199 -9 343 333 113 33 chr6 2991802 2992267 -186287287 + L1 LINE L1 3930 4429 -1717 233 373 24 24 chr6 2992340 2992509 -186287045 - MIR SINE MIR -90 172 4 516 271 46 13 chr6 2993005 2993156 -186286398 + LTR35 LTR ERV1 463 618 0 578 238 78 24 chr6 2993630 2993836 -186285718 - HAL1 LINE L1 0 2507 2291 787 215 0 6 chr6 2993841 2994004 -186285550 - AluJo SINE Alu 0 312 151 290 236 95 107 chr6 2994071 2994313 -186285241 - HAL1 LINE L1 -358 2149 1911 1860 158 13 16 chr6 2995445 2995748 -186283806 + MER1B DNA MER1_type 38 339 0 872 182 13 0 chr6 2995813 2995972 -186283582 - AluJo SINE Alu -151 161 1 6006 94 14 25 chr6 2996255 2997491 -186282063 + L1PA14 LINE L1 4941 6161 0 3281 95 21 31 chr6 2996976 2997493 -186282061 + L1PA13 LINE L1 5652 6163 0 356 287 17 98 chr6 2997685 2997859 -186281695 - HAL1 LINE L1 -1606 901 742 222 240 0 0 chr6 2998362 2998412 -186281142 + (TA)n Simple_repeat Simple_repeat 2 51 0 287 49 24 0 chr6 2998779 2998820 -186280734 + (TG)n Simple_repeat Simple_repeat 2 43 0 1100 103 0 0 chr6 2998872 2999017 -186280537 + AluSg SINE Alu 1 145 -165 429 115 179 0 chr6 2999017 2999095 -186280459 + AluSc SINE Alu 201 292 -17 198 103 0 0 chr6 2999742 2999771 -186279783 + (A)n Simple_repeat Simple_repeat 1 29 0 215 222 25 37 chr6 3000401 3000482 -186279072 + C-rich Low_complexity Low_complexity 1 80 0 391 133 0 0 chr6 3000899 3000959 -186278595 + MER41B LTR ERV1 131 190 -445 2021 85 61 0 chr6 3000960 3001254 -186278300 + AluSx SINE Alu 1 312 0 6101 83 25 20 chr6 3001256 3002197 -186277357 + L1PB1 LINE L1 5151 6097 -54 1908 130 7 17 chr6 3002197 3002497 -186277057 + AluSg SINE Alu 1 297 -13 6101 83 25 20 chr6 3002497 3002553 -186277001 + L1PB1 LINE L1 6097 6151 0 32 26 0 0 chr6 3002554 3002593 -186276961 + AT_rich Low_complexity Low_complexity 1 39 0 430 239 19 65 chr6 3002846 3003001 -186276553 - MER20 DNA MER1_type 0 219 72 389 273 66 93 chr6 3003018 3003484 -186276070 - L1M4 LINE L1 -906 5240 4798 2120 112 0 0 chr6 3003606 3003902 -186275652 - AluSg SINE Alu -14 296 1 1913 150 0 0 chr6 3003958 3004245 -186275309 + AluSg SINE Alu 1 287 -23 33 0 0 0 chr6 3004245 3004278 -186275276 + AT_rich Low_complexity Low_complexity 1 33 0 436 162 0 0 chr6 3004292 3004360 -186275194 + AluS SINE Alu 2 69 -243 218 54 0 27 chr6 3004380 3004417 -186275137 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 485 308 65 16 chr6 3004420 3004895 -186274659 - L1M4 LINE L1 -1530 4616 4122 196 360 11 22 chr6 3004948 3005037 -186274517 + L3 LINE CR1 324 411 -1166 222 239 60 15 chr6 3005315 3005382 -186274172 + L3 LINE CR1 892 961 -616 4868 133 47 21 chr6 3006185 3007055 -186272499 - MER4D LTR ERV1 0 872 1 22 0 0 0 chr6 3007135 3007157 -186272397 + AT_rich Low_complexity Low_complexity 1 22 0 2170 142 39 88 chr6 3007944 3008276 -186271278 + MER4B LTR ERV1 1 348 -431 1778 148 40 0 chr6 3008276 3008573 -186270981 - AluJb SINE Alu -3 309 1 2170 142 39 88 chr6 3008573 3008847 -186270707 + MER4B LTR ERV1 348 779 0 3820 147 3 51 chr6 3008936 3009603 -186269951 + MER41B LTR ERV1 1 635 0 2363 161 60 31 chr6 3010956 3010993 -186268561 + MER31A LTR ERV1 1 35 -450 1876 130 22 0 chr6 3010993 3011428 -186268126 - AluSx SINE Alu 0 441 1 2363 161 60 31 chr6 3011428 3011843 -186267711 + MER31A LTR ERV1 35 467 -18 216 297 16 0 chr6 3012104 3012168 -186267386 + CT-rich Low_complexity Low_complexity 4 68 0 806 160 23 0 chr6 3012185 3012316 -186267238 - FRAM SINE Alu -38 138 5 382 182 0 26 chr6 3013091 3013168 -186266386 + MER39 LTR ERV1 633 707 0 2053 120 0 14 chr6 3013201 3013493 -186266061 + AluSx SINE Alu 1 288 -24 1136 116 0 0 chr6 3013508 3013672 -186265882 + AluSg/x SINE Alu 130 293 -17 2224 103 0 0 chr6 3014488 3014790 -186264764 - AluSx SINE Alu -10 302 1 2289 88 0 0 chr6 3015256 3015552 -186264002 - AluSg SINE Alu -14 296 1 343 299 97 83 chr6 3015552 3015830 -186263724 - L2 LINE L2 -6 3266 2985 2296 137 154 7 chr6 3016055 3016510 -186263044 - MER1A DNA MER1_type -8 525 1 2140 113 0 0 chr6 3016616 3016916 -186262638 + AluSg SINE Alu 1 300 -10 318 325 68 24 chr6 3016925 3017174 -186262380 - L2 LINE L2 -798 2516 2257 285 321 0 79 chr6 3019729 3019869 -186259685 + L2 LINE L2 3141 3269 -3 3913 105 27 5 chr6 3019906 3020458 -186259096 + LTR6A LTR ERV1 1 564 0 33 43 0 0 chr6 3020718 3020765 -186258789 + AT_rich Low_complexity Low_complexity 1 47 0 1945 122 0 22 chr6 3020818 3021129 -186258425 + AluSx SINE Alu 1 304 -8 520 176 77 6 chr6 3021465 3021591 -186257963 - L1MD3 LINE L1 0 7982 6246 2172 197 35 0 chr6 3021592 3022014 -186257540 - MER54A LTR ERVL 0 901 465 259 199 164 68 chr6 3021955 3022101 -186257453 + MER74A LTR ERVL 355 514 -44 * 316 223 100 3 chr6 3022121 3022227 -186257327 - L1MD3 LINE L1 -108 7871 7565 2499 56 0 0 chr6 3022387 3022692 -186256862 - AluY SINE Alu -6 305 1 282 91 0 0 chr6 3023108 3023149 -186256405 + MSTB1 LTR MaLR 4 44 -382 812 213 0 6 chr6 3023149 3023323 -186256231 - FRAM SINE Alu -3 173 1 2145 128 80 13 chr6 3023323 3023698 -186255856 + MSTB1 LTR MaLR 33 432 0 1341 215 100 0 chr6 3024137 3024448 -186255106 + MER2 DNA MER2_type 2 343 -1 470 180 9 81 chr6 3024694 3024805 -186254749 - Tigger1 DNA MER2_type -2315 103 1 274 109 254 0 chr6 3024808 3024863 -186254691 + L1M4c LINE L1 1452 1520 -4864 * 2715 164 58 39 chr6 3024858 3025285 -186254269 + L1MB4 LINE L1 4827 5245 -935 2317 74 3 0 chr6 3025285 3025584 -186253970 + AluSp SINE Alu 1 300 -13 2715 164 58 39 chr6 3025584 3026068 -186253486 + L1MB4 LINE L1 5245 5773 -407 591 15 0 0 chr6 3026078 3026146 -186253408 + (TTCC)n Simple_repeat Simple_repeat 3 70 0 1356 147 9 0 chr6 3026147 3026371 -186253183 - AluSp SINE Alu 0 313 88 1704 181 18 29 chr6 3026387 3026618 -186252936 + L1MB4 LINE L1 5799 6026 -154 1797 130 51 0 chr6 3026618 3026910 -186252644 - AluSx SINE Alu -5 307 1 1704 181 18 29 chr6 3026910 3027064 -186252490 + L1MB4 LINE L1 6026 6180 0 297 271 97 7 chr6 3028347 3028491 -186251063 - L1MD1 LINE L1 -87 6155 5999 262 86 0 0 chr6 3028568 3028603 -186250951 - tRNA-Gly-GGG tRNA tRNA -39 35 1 314 237 32 11 chr6 3028612 3028705 -186250849 - L1MD1 LINE L1 -456 5903 5809 258 145 13 64 chr6 3028896 3029060 -186250494 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 183 286 20 0 chr6 3029554 3029603 -186249951 - MIR SINE MIR -88 174 125 2176 72 14 3 chr6 3029793 3030086 -186249468 - AluSg SINE Alu -14 296 1 1547 113 4 4 chr6 3030089 3030319 -186249235 - AluSg/x SINE Alu -8 302 73 2208 102 16 3 chr6 3030330 3030635 -186248919 - AluSq SINE Alu -4 309 1 2064 130 0 3 chr6 3031559 3031858 -186247696 - AluSx SINE Alu -13 299 2 279 352 56 28 chr6 3031866 3032045 -186247509 + L2 LINE L2 2718 2901 -413 290 214 0 0 chr6 3032046 3032102 -186247452 - AluJo SINE Alu 0 302 247 1028 163 6 12 chr6 3032103 3032275 -186247279 - AluJo SINE Alu -112 200 30 298 270 92 116 chr6 3033183 3033476 -186246078 - MLT1J LTR MaLR -127 384 99 246 228 0 0 chr6 3034056 3034113 -186245441 - L1MB2 LINE L1 0 6171 6115 1497 84 0 0 chr6 3034154 3034344 -186245210 - AluSx SINE Alu -122 190 1 2006 182 51 31 chr6 3034380 3034879 -186244675 - L1M3 LINE L1 -408 5772 5266 303 265 29 20 chr6 3035068 3035170 -186244384 - MIR SINE MIR -66 142 40 541 191 0 0 chr6 3035837 3035926 -186243628 - FLAM SINE Alu -15 128 40 241 321 24 73 chr6 3035999 3036164 -186243390 + L2 LINE L2 3138 3294 -19 1014 177 14 32 chr6 3036354 3036574 -186242980 - MER20 DNA MER1_type -3 216 1 2164 92 23 3 chr6 3037385 3037690 -186241864 + AluSp SINE Alu 1 311 -2 1121 130 0 6 chr6 3037717 3037879 -186241675 + AluSx SINE Alu 1 161 -151 4183 106 11 11 chr6 3037915 3038531 -186241023 - MER11C LTR ERVK -14 1057 442 5682 173 56 16 chr6 3038642 3040341 -186239213 + L1M3f LINE L1 269 2035 -4065 365 288 137 7 chr6 3040353 3040499 -186239055 + MIR SINE MIR 81 245 -17 2690 16 0 0 chr6 3041087 3041395 -186238159 - AluY SINE Alu -3 308 1 536 274 105 11 chr6 3042870 3043060 -186236494 - MIR SINE MIR -8 254 47 298 289 114 0 chr6 3043872 3043986 -186235568 - L2 LINE L2 -1 3312 3186 2240 103 0 0 chr6 3044289 3044591 -186234963 + AluSx SINE Alu 1 302 -10 357 145 0 0 chr6 3045161 3045223 -186234331 + (CA)n Simple_repeat Simple_repeat 1 62 0 304 289 10 39 chr6 3046001 3046105 -186233449 - L1MB2 LINE L1 -2453 5355 5255 393 241 145 48 chr6 3046136 3046364 -186233190 - L1MB2 LINE L1 -1686 4460 4211 1981 113 7 0 chr6 3046365 3046678 -186232876 + AluSx SINE Alu 1 315 0 599 259 100 80 chr6 3046977 3047328 -186232226 - L1ME4a LINE L1 0 6121 5764 3154 169 7 4 chr6 3047920 3048483 -186231071 - L1PA16 LINE L1 -3 6163 5599 825 168 0 21 chr6 3048617 3048763 -186230791 - FLAM_C SINE Alu 0 143 4 1600 135 39 143 chr6 3049013 3049115 -186230439 + MER7A DNA MER2_type 3 114 -2924 1451 173 60 7 chr6 3049115 3049398 -186230156 - AluJo SINE Alu -12 300 3 1600 135 39 143 chr6 3049398 3049679 -186229875 + MER7A DNA MER2_type 114 344 -2 484 70 0 56 chr6 3049694 3049765 -186229789 + Alu SINE Alu 5 71 -240 371 240 142 49 chr6 3049785 3049989 -186229565 - L1 LINE L1 -1713 4433 4211 1955 75 68 4 chr6 3049990 3050271 -186229283 + AluY SINE Alu 1 299 -12 1666 168 7 21 chr6 3050276 3050567 -186228987 + AluJo SINE Alu 1 287 -25 1537 190 7 7 chr6 3050568 3050873 -186228681 + AluJb SINE Alu 1 305 -7 2238 66 17 0 chr6 3052546 3052833 -186226721 - AluSp SINE Alu -21 292 1 2065 81 3 14 chr6 3053375 3053658 -186225896 + AluSx SINE Alu 22 301 -11 222 206 63 16 chr6 3053661 3053724 -186225830 - MIR SINE MIR -162 100 35 880 310 114 34 chr6 3053804 3054337 -186225217 + MLT1K LTR MaLR 12 587 -1 340 267 44 0 chr6 3054592 3054682 -186224872 + MIR SINE MIR 55 148 -60 372 305 58 0 chr6 3055046 3055200 -186224354 - MIR SINE MIR -87 175 13 330 329 29 7 chr6 3055364 3055504 -186224050 + L1MEd LINE L1 300 442 -5974 4688 167 30 47 chr6 3055658 3056894 -186222660 + pTR5 LTR ERV1 6 595 -119 492 320 59 15 chr6 3057053 3057325 -186222229 + L1MEd LINE L1 854 1137 -5279 1687 167 10 3 chr6 3057421 3057714 -186221840 + AluJo SINE Alu 1 295 -17 326 250 167 36 chr6 3057840 3058008 -186221546 + L1MEd LINE L1 2178 2367 -4059 740 314 59 15 chr6 3058038 3058503 -186221051 + L1MEd LINE L1 2401 2889 -3537 2190 80 7 0 chr6 3058503 3058790 -186220764 + AluSp SINE Alu 1 289 -24 740 314 59 15 chr6 3058790 3058801 -186220753 + L1MEd LINE L1 2889 2898 -3528 269 231 26 39 chr6 3058846 3058924 -186220630 + L1ME3A LINE L1 5485 5561 -603 318 321 120 55 chr6 3058969 3059243 -186220311 + L1ME3A LINE L1 5799 6090 -80 1680 183 0 14 chr6 3059360 3059655 -186219899 + AluJo SINE Alu 1 291 -21 660 88 22 0 chr6 3060025 3060116 -186219438 - AluJb SINE Alu -15 297 205 794 161 0 29 chr6 3061719 3061856 -186217698 + FLAM_C SINE Alu 1 133 0 963 198 19 14 chr6 3061945 3062152 -186217402 - MLT1A1 LTR MaLR 0 365 158 985 150 0 53 chr6 3062152 3062339 -186217215 - AluJo SINE Alu -135 177 1 1485 239 23 47 chr6 3062379 3062806 -186216748 + MLT1C LTR MaLR 1 417 -50 472 106 9 50 chr6 3062839 3062933 -186216621 + L1MDa LINE L1 1217 1304 -5236 1686 171 7 10 chr6 3062933 3063238 -186216316 + AluJo SINE Alu 1 304 -8 472 106 9 50 chr6 3063238 3063290 -186216264 + L1MDa LINE L1 1304 1357 -5183 * 624 207 41 12 chr6 3063289 3063458 -186216096 + L1MDa LINE L1 1644 1817 -4723 2341 242 57 7 chr6 3063461 3063519 -186216035 + L1MDa LINE L1 2952 3006 -3534 2387 149 16 71 chr6 3063519 3063970 -186215584 + MSTB LTR MaLR 1 426 0 2341 242 57 7 chr6 3063970 3064660 -186214894 + L1MDa LINE L1 3006 3738 -2802 2442 122 100 5 chr6 3064675 3065084 -186214470 + MER83 LTR ERV1 1 448 0 9622 179 22 42 chr6 3065108 3066938 -186212616 + MER83-int LTR ERV1 22 1815 -2470 2109 174 14 68 chr6 3066907 3066990 -186212564 + MER83-int LTR ERV1 4373 4459 -1487 * 1853 36 5 0 chr6 3066990 3067212 -186212342 - L1PA4 LINE L1 -8 6147 5925 2109 174 14 68 chr6 3067212 3067616 -186211938 + MER83-int LTR ERV1 4459 4834 -1112 1646 176 37 3 chr6 3067769 3068065 -186211489 + AluJb SINE Alu 1 306 -6 3315 145 59 66 chr6 3068065 3068756 -186210798 + MER83-int LTR ERV1 5365 6204 -394 2329 44 40 7 chr6 3068756 3069053 -186210501 + AluY SINE Alu 3 309 -2 3315 145 59 66 chr6 3069053 3069105 -186210449 + MER83-int LTR ERV1 6204 6255 -343 445 151 118 132 chr6 3069140 3069292 -186210262 + MER83-int LTR ERV1 5924 6073 -258 * 2109 141 62 25 chr6 3069287 3069641 -186209913 + MER83-int LTR ERV1 2663 3029 -1256 * 2138 175 17 62 chr6 3069634 3070052 -186209502 + MER83-int LTR ERV1 3876 4274 -11 2390 130 78 53 chr6 3070053 3070426 -186209128 + MER83 LTR ERV1 1 388 -60 2210 86 3 0 chr6 3070426 3070717 -186208837 - AluSp SINE Alu -21 292 1 2390 130 78 53 chr6 3070717 3070780 -186208774 + MER83 LTR ERV1 388 448 0 1196 232 58 35 chr6 3070811 3071242 -186208312 + L1MDa LINE L1 3779 4219 -2321 1893 130 7 33 chr6 3071259 3071560 -186207994 + AluSx SINE Alu 1 293 -19 652 235 36 41 chr6 3071594 3071815 -186207739 + L1MDa LINE L1 4158 4377 -2163 226 53 0 0 chr6 3071820 3071858 -186207696 - AluJo SINE Alu 0 302 265 800 119 8 0 chr6 3071858 3071976 -186207578 - AluSq/x SINE Alu -194 119 1 1956 219 96 57 chr6 3072037 3072218 -186207336 + L1MDa LINE L1 4455 4627 -1913 2309 90 0 0 chr6 3072218 3072530 -186207024 + AluSq SINE Alu 1 312 -1 1956 219 96 57 chr6 3072530 3073120 -186206434 + L1MDa LINE L1 4627 5256 -1284 231 36 0 0 chr6 3073141 3073169 -186206385 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1538 169 22 0 chr6 3073172 3073439 -186206115 - AluJo SINE Alu -32 280 8 2317 235 17 26 chr6 3074954 3075605 -186203949 - L1M4 LINE L1 -1748 4398 3754 2203 93 23 0 chr6 3075655 3075957 -186203597 + AluSc SINE Alu 1 309 0 1739 157 14 3 chr6 3076129 3076422 -186203132 - AluJo SINE Alu -16 296 1 1717 216 176 7 chr6 3077974 3078548 -186201006 - L1M4 LINE L1 -1612 4534 3864 886 174 0 0 chr6 3078552 3078696 -186200858 + FAM SINE Alu 5 148 -37 1998 117 0 0 chr6 3078728 3079035 -186200519 - AluSx SINE Alu 0 307 1 298 270 92 116 chr6 3079658 3079951 -186199603 + MLT1J LTR MaLR 99 384 -127 214 211 28 37 chr6 3081917 3082026 -186197528 + (CACGC)n Simple_repeat Simple_repeat 1 108 0 2072 88 37 3 chr6 3082125 3082419 -186197135 + AluSx SINE Alu 1 304 -8 298 264 94 26 chr6 3082527 3082829 -186196725 + L1MD1 LINE L1 5815 6156 -86 2888 48 3 0 chr6 3082940 3083292 -186196262 + LTR5 LTR ERVK 1 353 -616 3139 31 0 0 chr6 3083292 3083649 -186195905 + HERVK LTR ERVK 4787 5143 -2100 2225 35 6 99 chr6 3084441 3084784 -186194770 - AluY SINE Alu 0 311 1 1384 231 24 11 chr6 3085327 3085502 -186194052 - L1MB4 LINE L1 -1 6179 6005 2276 205 53 37 chr6 3085502 3086584 -186192970 - L1MC4 LINE L1 -461 5719 4863 274 131 229 0 chr6 3086595 3086656 -186192898 - L1M4c LINE L1 -4858 1526 1452 14424 126 40 18 chr6 3086659 3088107 -186191447 + Tigger1 DNA MER2_type 1 1416 -1002 2023 102 0 0 chr6 3088107 3088451 -186191103 + AluSq SINE Alu 1 344 0 14424 126 40 18 chr6 3088451 3088864 -186190690 + Tigger1 DNA MER2_type 1416 1818 -600 2250 105 0 0 chr6 3088864 3089170 -186190384 + AluSx SINE Alu 1 306 -6 14424 126 40 18 chr6 3089170 3089349 -186190205 + Tigger1 DNA MER2_type 1818 1992 -426 2433 57 0 0 chr6 3089349 3089648 -186189906 + AluY SINE Alu 1 299 -12 14424 126 40 18 chr6 3089648 3089970 -186189584 + Tigger1 DNA MER2_type 1992 2418 0 2715 168 14 89 chr6 3089970 3090665 -186188889 + L1MB8 LINE L1 5531 6173 -5 28 0 0 0 chr6 3090665 3090693 -186188861 + AT_rich Low_complexity Low_complexity 1 28 0 2165 101 7 0 chr6 3090693 3090999 -186188555 - AluSg SINE Alu -2 308 1 662 218 70 0 chr6 3091009 3091151 -186188403 + MER96 DNA MER1_type? 23 174 -1 2439 24 0 70 chr6 3093101 3093432 -186186122 + AluY SINE Alu 1 308 -3 408 203 123 123 chr6 3094121 3094169 -186185385 + L2 LINE L2 3176 3223 -90 1981 119 34 0 chr6 3094169 3094464 -186185090 - AluSx SINE Alu -7 305 1 408 203 123 123 chr6 3094464 3094553 -186185001 + L2 LINE L2 3222 3313 0 183 357 71 12 chr6 3094560 3094644 -186184910 + L2 LINE L2 3180 3268 -4 4489 165 70 64 chr6 3094680 3095821 -186183733 - L1MC2 LINE L1 -1 6343 5199 2292 82 0 3 chr6 3095881 3096184 -186183370 - AluSq SINE Alu -11 302 1 23 33 0 0 chr6 3096192 3096222 -186183332 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr6 3097062 3097096 -186182458 + GC_rich Low_complexity Low_complexity 1 34 0 2044 99 10 3 chr6 3097871 3098173 -186181381 + AluSx SINE Alu 2 305 -7 1883 132 18 0 chr6 3098585 3098866 -186180688 - AluSg SINE Alu -19 291 6 216 368 58 0 chr6 3099084 3099171 -186180383 + MIR SINE MIR 88 179 -83 348 179 64 26 chr6 3099305 3099383 -186180171 - MLT1L LTR MaLR -532 83 3 402 233 89 33 chr6 3100367 3100547 -186179007 - L1ME4a LINE L1 -6 6115 5926 251 226 52 70 chr6 3100582 3100697 -186178857 - L1ME4a LINE L1 -284 5837 5725 199 218 164 18 chr6 3100741 3100796 -186178758 - L2 LINE L2 -52 3220 3158 310 263 11 63 chr6 3101238 3101333 -186178221 - L1MC4 LINE L1 -1339 6703 6614 * 335 243 0 107 chr6 3101276 3101379 -186178175 + L1MC4 LINE L1 6614 6705 -1337 249 147 29 15 chr6 3101380 3101448 -186178106 + (TA)n Simple_repeat Simple_repeat 1 69 0 512 226 178 0 chr6 3101467 3101613 -186177941 - MIR SINE MIR -70 192 21 1788 206 90 25 chr6 3102231 3102720 -186176834 - L1ME2 LINE L1 -53 6111 5591 2281 82 0 19 chr6 3102804 3103120 -186176434 - AluSg SINE Alu 0 310 1 734 232 12 4 chr6 3103227 3103425 -186176129 - L1ME4a LINE L1 -541 5625 5425 543 265 151 62 chr6 3103606 3104077 -186175477 - L1MEd LINE L1 -5250 869 357 373 309 20 7 chr6 3104225 3104377 -186175177 - L1MEd LINE L1 -5960 159 6 1794 144 0 39 chr6 3104527 3104839 -186174715 + AluJo SINE Alu 2 301 -11 243 0 0 0 chr6 3104840 3104867 -186174687 + (TA)n Simple_repeat Simple_repeat 1 27 0 207 88 0 0 chr6 3105668 3105702 -186173852 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 774 145 0 0 chr6 3106201 3106318 -186173236 - FLAM_A SINE Alu -6 136 20 641 171 77 0 chr6 3106365 3106482 -186173072 + AluJb SINE Alu 5 130 -182 23 33 0 0 chr6 3106823 3106853 -186172701 + AT_rich Low_complexity Low_complexity 1 30 0 1022 173 0 18 chr6 3107049 3107217 -186172337 - FRAM SINE Alu -1 165 1 2028 107 3 0 chr6 3107229 3107518 -186172036 - AluSg SINE Alu -20 290 1 271 231 249 72 chr6 3107546 3107767 -186171787 - L2 LINE L2 -177 3095 2836 470 51 17 0 chr6 3107979 3108038 -186171516 - 5S rRNA rRNA -29 92 33 225 281 271 0 chr6 3108768 3108864 -186170690 - L2 LINE L2 0 3313 3192 2401 80 3 0 chr6 3109719 3110031 -186169523 + AluSp SINE Alu 1 313 0 430 259 36 27 chr6 3111442 3111554 -186168000 + L2 LINE L2 3201 3313 0 209 295 64 26 chr6 3111737 3111815 -186167739 - L2 LINE L2 -2 3311 3231 553 325 135 43 chr6 3111881 3112732 -186166822 + L2 LINE L2 2165 3113 -159 2201 113 0 0 chr6 3112732 3113032 -186166522 - AluSc SINE Alu -9 300 1 553 325 135 43 chr6 3113032 3113119 -186166435 + L2 LINE L2 3113 3191 -81 1729 149 17 13 chr6 3113764 3113776 -186165778 - L1MB3 LINE L1 -153 6030 6020 435 179 0 11 chr6 3113776 3113871 -186165683 - L1MB3 LINE L1 -2 6181 6088 1729 149 17 13 chr6 3113871 3114159 -186165395 - L1MB3 LINE L1 -163 6020 5729 1475 193 56 3 chr6 3114283 3114589 -186164965 - L1MB3 LINE L1 -430 5812 5491 1953 241 82 29 chr6 3114605 3115131 -186164423 - MER21B LTR ERV1 -270 593 40 503 151 0 0 chr6 3115141 3115227 -186164327 - L1MDa LINE L1 -4482 2058 1973 4403 206 109 113 chr6 3115231 3115700 -186163854 - L1MDa LINE L1 -4745 1795 1326 2090 65 61 0 chr6 3115700 3115978 -186163576 - AluY SINE Alu -16 295 1 4403 206 109 113 chr6 3115978 3116860 -186162694 - L1MDa LINE L1 -5214 1326 361 629 167 0 0 chr6 3116860 3116950 -186162604 - 5S rRNA rRNA -31 90 1 4403 206 109 113 chr6 3116950 3117310 -186162244 - L1MDa LINE L1 -6179 361 1 22 70 0 0 chr6 3117659 3117702 -186161852 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr6 3118536 3118557 -186160997 + AT_rich Low_complexity Low_complexity 1 21 0 850 276 15 15 chr6 3118560 3118901 -186160653 + L1MC/D LINE L1 2337 2677 -3469 763 264 113 27 chr6 3121796 3122126 -186157428 + L1MC/D LINE L1 2688 3081 -3065 180 0 0 0 chr6 3122126 3122146 -186157408 + (TA)n Simple_repeat Simple_repeat 2 21 0 763 264 113 27 chr6 3122146 3122338 -186157216 + L1MC/D LINE L1 3081 3255 -2891 1381 186 29 14 chr6 3122349 3122624 -186156930 + AluJo SINE Alu 25 303 -9 1740 287 80 27 chr6 3122624 3123392 -186156162 + L1MC/D LINE L1 3245 4074 -2072 1732 161 28 3 chr6 3123392 3123683 -186155871 - AluJb SINE Alu -14 298 1 1740 287 80 27 chr6 3123683 3123870 -186155684 + L1MC/D LINE L1 4074 4250 -1896 459 244 65 30 chr6 3123894 3124095 -186155459 + L1MC/D LINE L1 4402 4609 -1537 2256 101 0 0 chr6 3124096 3124404 -186155150 - AluY SINE Alu -3 308 1 2083 102 0 0 chr6 3124409 3124716 -186154838 - AluSx SINE Alu 0 307 1 1242 270 49 36 chr6 3124766 3125296 -186154258 + L1MC/D LINE L1 4621 5157 -989 35 41 0 0 chr6 3125337 3125386 -186154168 + AT_rich Low_complexity Low_complexity 1 49 0 501 267 53 25 chr6 3125416 3125459 -186154095 + L1MC/D LINE L1 5156 5196 -1009 1395 156 84 11 chr6 3125459 3125745 -186153809 + AluJo SINE Alu 1 305 0 501 267 53 25 chr6 3125745 3125996 -186153558 + L1MC/D LINE L1 5196 5471 -734 417 314 69 5 chr6 3126024 3126228 -186153326 + L1MC4a LINE L1 4491 4707 -1439 358 251 81 8 chr6 3126282 3126624 -186152930 - LTR16A LTR ERVL -2 448 1 615 298 133 29 chr6 3126762 3126808 -186152746 + L1MC4a LINE L1 5258 5298 -823 2381 77 0 0 chr6 3126808 3127119 -186152435 + AluY SINE Alu 1 311 0 615 298 133 29 chr6 3127119 3127673 -186151881 + L1MC4a LINE L1 5298 5545 -576 1775 146 3 11 chr6 3127685 3127972 -186151582 + AluSx SINE Alu 1 285 -27 2134 106 7 7 chr6 3128137 3128438 -186151116 - AluSx SINE Alu -11 301 1 22 88 0 0 chr6 3128481 3128538 -186151016 + AT_rich Low_complexity Low_complexity 1 57 0 1297 164 126 0 chr6 3128550 3128819 -186150735 + AluJb SINE Alu 1 303 -9 867 209 0 17 chr6 3128854 3129031 -186150523 + FRAM SINE Alu 1 174 -2 267 225 152 29 chr6 3129176 3129314 -186150240 + L1ME4a LINE L1 5964 6118 -3 2727 175 50 27 chr6 3129315 3129704 -186149850 - L1MB4 LINE L1 0 6180 5802 2019 129 31 20 chr6 3129704 3130061 -186149493 + MER46B DNA MER2_type 1 236 0 2727 175 50 27 chr6 3130061 3130151 -186149403 - L1MB4 LINE L1 -378 5802 5716 1990 86 31 14 chr6 3130151 3130441 -186149113 - AluSx SINE Alu -17 295 1 2727 175 50 27 chr6 3130441 3130832 -186148722 - L1MB4 LINE L1 -464 5716 5336 1727 136 0 14 chr6 3130832 3131112 -186148442 - AluSx SINE Alu -1 311 36 2727 175 50 27 chr6 3131112 3131626 -186147928 - L1MB4 LINE L1 -844 5336 4669 369 368 12 6 chr6 3132098 3132269 -186147285 - L2 LINE L2 -1673 1641 1470 293 242 182 15 chr6 3132267 3132399 -186147155 + MIR SINE MIR 69 222 -40 * 2096 101 21 0 chr6 3132410 3132697 -186146857 - AluSx SINE Alu -19 293 1 2109 120 0 3 chr6 3134514 3134813 -186144741 + AluSx SINE Alu 1 298 -14 2142 86 6 32 chr6 3134820 3135133 -186144421 + AluSg SINE Alu 1 305 -5 351 256 26 51 chr6 3135146 3135263 -186144291 - L2 LINE L2 -31 3282 3169 451 305 73 11 chr6 3135744 3135921 -186143633 + MIR3 SINE MIR 20 207 -1 223 222 111 74 chr6 3136112 3136193 -186143361 + MIR SINE MIR 179 262 0 250 304 82 44 chr6 3136606 3136741 -186142813 - L2 LINE L2 -4 3309 3170 3677 164 37 17 chr6 3137171 3137750 -186141804 - L1MB3 LINE L1 0 6183 5585 2258 79 7 7 chr6 3137750 3138053 -186141501 - AluSx SINE Alu -9 303 1 3677 164 37 17 chr6 3138053 3138198 -186141356 - L1MB3 LINE L1 -598 5585 5444 554 243 35 7 chr6 3138649 3138793 -186140761 + MIR SINE MIR 105 252 -10 1046 216 25 0 chr6 3139067 3139271 -186140283 - MER58A DNA MER1_type -15 209 1 353 263 0 114 chr6 3140009 3140074 -186139480 + MER91A DNA MER1_type 88 136 -60 1784 148 3 29 chr6 3140074 3140384 -186139170 - AluJo SINE Alu -10 302 1 353 263 0 114 chr6 3140384 3140432 -186139122 + MER91A DNA MER1_type 136 188 -8 746 141 8 8 chr6 3141048 3141169 -186138385 - FLAM_C SINE Alu -21 122 2 905 167 51 65 chr6 3142235 3142451 -186137103 - MER20 DNA MER1_type 0 219 7 21 0 0 0 chr6 3142706 3142727 -186136827 + AT_rich Low_complexity Low_complexity 1 21 0 1380 176 0 12 chr6 3143474 3143719 -186135835 + AluJo SINE Alu 1 242 -70 470 269 57 14 chr6 3143891 3144032 -186135522 + MIR SINE MIR 72 218 -44 2251 95 0 0 chr6 3144118 3144412 -186135142 + AluSq SINE Alu 2 295 -18 3771 173 30 12 chr6 3145039 3145763 -186133791 - L1MB3 LINE L1 -5 6178 5442 246 186 29 88 chr6 3146129 3146231 -186133323 + (CGGGG)n Simple_repeat Simple_repeat 2 97 0 198 339 121 16 chr6 3146652 3146776 -186132778 - MIR3 SINE MIR -52 156 20 362 292 53 0 chr6 3146908 3147021 -186132533 - MER5A DNA MER1_type -7 182 64 2104 95 7 3 chr6 3147584 3147880 -186131674 - AluSq SINE Alu -16 297 1 263 208 47 36 chr6 3148491 3148624 -186130930 + MIR SINE MIR 36 206 -56 1960 116 0 58 chr6 3148834 3149162 -186130392 - AluSc SINE Alu 0 309 1 2381 68 0 3 chr6 3149563 3149855 -186129699 + AluY SINE Alu 21 311 0 1707 118 45 0 chr6 3150889 3151176 -186128378 - L1MA5A LINE L1 0 6297 5998 391 243 0 0 chr6 3151623 3151697 -186127857 + MER81 DNA DNA 3 76 -38 1969 156 9 0 chr6 3151997 3152330 -186127224 + MER2 DNA MER2_type 10 345 0 2174 115 14 0 chr6 3152595 3152890 -186126664 - AluSx SINE Alu -13 299 1 23 0 0 0 chr6 3153790 3153813 -186125741 + AT_rich Low_complexity Low_complexity 1 23 0 945 175 0 12 chr6 3154132 3154298 -186125256 - AluSc SINE Alu -11 298 135 2009 81 7 61 chr6 3154301 3154597 -186124957 - AluSx SINE Alu -13 299 20 365 263 101 86 chr6 3155035 3155366 -186124188 - L1ME4a LINE L1 -3 6118 5778 2308 117 0 0 chr6 3155366 3155664 -186123890 - AluSg SINE Alu -12 298 1 365 263 101 86 chr6 3155664 3155750 -186123804 - L1ME4a LINE L1 -343 5778 5695 340 327 159 10 chr6 3155750 3155958 -186123596 - L1ME LINE L1 -408 5762 5524 818 188 0 7 chr6 3157073 3157211 -186122343 + AluJb SINE Alu 137 273 -39 2227 110 3 3 chr6 3157351 3157652 -186121902 - AluSp SINE Alu -12 301 1 592 168 0 34 chr6 3158149 3158268 -186121286 + MER58 DNA MER1_type 2305 2419 -1 263 303 122 45 chr6 3158498 3158874 -186120680 + L2 LINE L2 1537 1941 -1373 1950 149 3 19 chr6 3160096 3160411 -186119143 + AluJb SINE Alu 3 312 0 606 281 86 34 chr6 3161334 3161658 -186117896 - L1ME4a LINE L1 -467 5695 5355 1980 143 6 19 chr6 3161974 3162149 -186117405 - AluJb SINE Alu -2 310 139 2544 50 10 0 chr6 3162149 3162447 -186117107 - AluY SINE Alu -10 301 1 1980 143 6 19 chr6 3162447 3162585 -186116969 - AluJb SINE Alu -173 139 1 284 297 49 30 chr6 3162876 3163164 -186116390 - L1MEc LINE L1 -4819 1651 1268 372 345 0 9 chr6 3163185 3163295 -186116259 - L1MEc LINE L1 -5030 1342 1234 303 327 19 31 chr6 3163300 3163462 -186116092 - L1MEc LINE L1 -5398 974 815 181 350 0 0 chr6 3164084 3164144 -186115410 - L2 LINE L2 -8 3264 3205 300 213 110 39 chr6 3164588 3164715 -186114839 - L2 LINE L2 -1 3271 3136 188 368 26 0 chr6 3164778 3164854 -186114700 - L2 LINE L2 -337 2976 2899 1959 137 7 10 chr6 3165571 3165863 -186113691 - AluSc SINE Alu -18 291 1 423 293 98 45 chr6 3166548 3166794 -186112760 + MIR SINE MIR 4 262 0 196 265 29 15 chr6 3166865 3166933 -186112621 + MIR SINE MIR 193 261 -1 227 319 118 0 chr6 3167228 3167363 -186112191 - MIR SINE MIR -70 192 42 335 287 10 0 chr6 3167760 3167861 -186111693 - MIR3 SINE MIR -12 196 95 2182 103 0 10 chr6 3168921 3169213 -186110341 - AluSc SINE Alu -20 289 1 216 322 92 26 chr6 3169302 3169454 -186110100 - MIR SINE MIR -44 218 57 2042 107 4 4 chr6 3169746 3170043 -186109511 + AluSq SINE Alu 14 310 0 729 235 39 0 chr6 3170426 3170605 -186108949 - MLT1B LTR MaLR -204 186 1 2419 85 7 0 chr6 3170858 3171163 -186108391 - AluY SINE Alu -4 307 1 2095 132 6 28 chr6 3171169 3171488 -186108066 - AluJo SINE Alu 0 312 1 200 263 7 0 chr6 3171884 3172036 -186107518 + (TTCGGG)n Simple_repeat Simple_repeat 6 158 0 213 252 0 0 chr6 3172080 3172215 -186107339 + (TTCGGG)n Simple_repeat Simple_repeat 6 140 0 496 278 10 0 chr6 3172241 3172978 -186106576 + (TTCGGG)n Simple_repeat Simple_repeat 1 744 0 371 277 9 0 chr6 3173024 3173502 -186106052 + (TTCGGG)n Simple_repeat Simple_repeat 1 482 0 471 284 18 0 chr6 3173582 3173751 -186105803 + (TTCGGG)n Simple_repeat Simple_repeat 5 176 0 236 276 35 23 chr6 3173783 3173870 -186105684 + MIR SINE MIR 105 192 -70 1288 186 5 0 chr6 3173913 3174134 -186105420 + AluJb SINE Alu 85 306 -6 810 183 0 20 chr6 3174272 3174425 -186105129 - FRAM SINE Alu -4 172 23 1860 196 21 75 chr6 3174456 3174976 -186104578 - MLT2B1 LTR ERVL -11 509 18 577 278 24 24 chr6 3175849 3176018 -186103536 - MIR SINE MIR 0 262 94 2165 100 14 0 chr6 3176476 3176778 -186102776 - AluSx SINE Alu 0 306 1 186 227 0 0 chr6 3177715 3177759 -186101795 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 1913 164 9 25 chr6 3179594 3179911 -186099643 + AluJo SINE Alu 1 312 0 583 274 0 0 chr6 3183903 3184027 -186095527 + FLAM_A SINE Alu 1 124 -9 478 312 64 86 chr6 3184030 3184062 -186095492 - MER92A LTR ERV1 -14 398 367 2473 79 7 0 chr6 3184062 3184367 -186095187 + AluSp SINE Alu 5 311 -2 478 312 64 86 chr6 3184367 3184741 -186094813 - MER92A LTR ERV1 -45 367 1 3379 137 6 4 chr6 3185888 3186401 -186093153 - MER75 DNA T2_type 0 514 1 619 360 45 11 chr6 3187171 3187457 -186092097 + MER115 DNA AcHobo 89 384 -309 776 263 105 25 chr6 3187457 3187742 -186091812 + MER77 LTR ERV1 290 597 -8 1301 267 68 32 chr6 3187826 3188298 -186091256 + MER77-int LTR ERV1 2 490 -3701 * 1464 237 23 66 chr6 3188288 3188462 -186091092 + MER77-int LTR ERV1 1218 1398 -2793 2392 116 0 0 chr6 3188462 3188772 -186090782 - AluSx SINE Alu -2 310 1 1464 237 23 66 chr6 3188772 3189036 -186090518 + MER77-int LTR ERV1 1398 1637 -2554 5132 227 52 30 chr6 3189115 3190448 -186089106 + MER77-int LTR ERV1 1631 2993 -1198 679 96 0 0 chr6 3190765 3190859 -186088695 - AluSx SINE Alu -10 302 209 2208 95 7 0 chr6 3191467 3191751 -186087803 - AluSx SINE Alu -22 290 5 4674 167 52 17 chr6 3192218 3193052 -186086502 - MER21B LTR ERV1 0 863 1 1707 121 20 154 chr6 3193483 3193971 -186085583 + MER4A LTR ERV1 1 423 -241 530 255 13 20 chr6 3193983 3194132 -186085422 + MER4C LTR ERV1 276 423 -42 290 250 13 26 chr6 3194129 3194205 -186085349 + MER4C LTR ERV1 389 463 -2 * 766 103 0 8 chr6 3194289 3194406 -186085148 - AluSp/q SINE Alu 0 313 198 1563 97 141 7 chr6 3194406 3194675 -186084879 + LTR7 LTR ERV1 9 313 -137 15579 158 17 33 chr6 3194675 3197944 -186081610 + HERVH LTR ERV1 982 4232 -2297 4512 132 173 23 chr6 3197952 3199317 -186080237 + pTR5 LTR ERV1 740 2438 0 6248 106 9 2 chr6 3199321 3200230 -186079324 + HERVH LTR ERV1 4235 5149 -2564 1342 146 0 0 chr6 3200231 3200451 -186079103 + HERVH LTR ERV1 5600 5819 -1894 * 2147 87 82 14 chr6 3200449 3200816 -186078738 + HERVH LTR ERV1 7322 7713 0 2817 83 95 5 chr6 3200816 3201227 -186078327 + LTR7 LTR ERV1 1 448 -2 1586 101 5 0 chr6 3201229 3201437 -186078117 - AluSx SINE Alu -103 209 1 917 213 0 0 chr6 3201442 3201611 -186077943 - FRAM SINE Alu -7 169 1 2374 90 0 0 chr6 3201752 3202062 -186077492 + AluY SINE Alu 1 310 -1 256 297 14 0 chr6 3202084 3202158 -186077396 - L3 LINE CR1 -75 1502 1428 500 291 30 44 chr6 3202186 3202389 -186077165 - MIR SINE MIR -50 212 13 238 164 36 36 chr6 3202390 3202445 -186077109 + MLT1E3 LTR MaLR 1 55 -569 2810 125 57 13 chr6 3202445 3203034 -186076520 - MER4B LTR ERV1 0 779 1 1269 246 53 59 chr6 3203034 3203556 -186075998 + MLT1E3 LTR MaLR 52 652 -2 365 309 62 16 chr6 3203582 3203825 -186075729 - LTR16C LTR ERVL -5 486 233 2187 123 0 0 chr6 3205117 3205425 -186074129 - AluSx SINE Alu -4 308 1 333 47 0 0 chr6 3205697 3205740 -186073814 + (TATG)n Simple_repeat Simple_repeat 2 44 0 1921 70 0 31 chr6 3205740 3205997 -186073557 - AluY SINE Alu -26 285 37 2271 59 0 0 chr6 3206536 3206808 -186072746 + AluY SINE Alu 1 272 -39 185 156 0 22 chr6 3208267 3208312 -186071242 + (CCCCAG)n Simple_repeat Simple_repeat 3 46 0 342 0 0 0 chr6 3209249 3209287 -186070267 + (TG)n Simple_repeat Simple_repeat 2 39 0 692 243 27 14 chr6 3209397 3209619 -186069935 + MER33 DNA MER1_type 5 229 -95 212 318 148 0 chr6 3209695 3209783 -186069771 - MIR SINE MIR -99 163 63 2389 62 0 3 chr6 3210059 3210363 -186069191 + AluY SINE Alu 1 303 -8 189 262 49 0 chr6 3210951 3211012 -186068542 + MIR SINE MIR 59 122 -86 23 0 0 0 chr6 3212283 3212306 -186067248 + AT_rich Low_complexity Low_complexity 1 23 0 1394 141 38 0 chr6 3212476 3212689 -186066865 - AluSg/x SINE Alu -14 296 76 956 248 56 0 chr6 3213182 3213416 -186066138 + MIR SINE MIR 15 261 -1 268 123 0 35 chr6 3213432 3213489 -186066065 + (TCCC)n Simple_repeat Simple_repeat 4 58 0 23 0 0 0 chr6 3213994 3214017 -186065537 + GC_rich Low_complexity Low_complexity 1 23 0 43 97 0 0 chr6 3314633 3314767 -185964787 + GC_rich Low_complexity Low_complexity 1 134 0 294 338 214 33 chr6 3317676 3318289 -185961265 - L3 LINE CR1 -2 1575 852 1937 136 0 26 chr6 3318551 3318861 -185960693 - AluJo SINE Alu 0 312 11 1550 168 25 50 chr6 3318950 3319372 -185960182 - Tigger5 DNA MER2_type 0 2323 1 224 0 65 0 chr6 3319612 3319643 -185959911 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2117 128 3 0 chr6 3319685 3319981 -185959573 + AluSx SINE Alu 1 297 -15 2471 74 0 0 chr6 3320577 3320874 -185958680 + AluSg SINE Alu 1 297 -13 1050 282 96 23 chr6 3321161 3321747 -185957807 - L1MC4a LINE L1 -297 5824 5266 363 314 84 58 chr6 3321768 3321994 -185957560 - L1MC4a LINE L1 -908 5238 5007 249 57 0 0 chr6 3322261 3322296 -185957258 + (TCTCCC)n Simple_repeat Simple_repeat 3 37 0 2345 80 0 6 chr6 3322388 3322699 -185956855 + AluY SINE Alu 1 309 -2 822 202 52 31 chr6 3322744 3322937 -185956617 - MER63A DNA MER1_type -2 208 12 2454 79 0 13 chr6 3322979 3323284 -185956270 + AluSx SINE Alu 1 301 -11 2509 88 0 0 chr6 3323294 3323602 -185955952 + AluY SINE Alu 1 308 -3 467 301 33 99 chr6 3323634 3323996 -185955558 - L2 LINE L2 -25 3247 2910 282 290 23 76 chr6 3324036 3324167 -185955387 - L2 LINE L2 -513 2801 2678 287 287 174 0 chr6 3324825 3324940 -185954614 - MIR3 SINE MIR -44 164 30 199 258 81 97 chr6 3325166 3325290 -185954264 + L2 LINE L2 2638 2759 -555 211 264 80 55 chr6 3325328 3325529 -185954025 + L2 LINE L2 2836 3041 -231 2310 90 3 7 chr6 3325682 3325981 -185953573 + AluSx SINE Alu 1 298 -14 190 293 146 24 chr6 3325999 3326122 -185953432 + MIR SINE MIR 46 183 -79 382 179 0 0 chr6 3327887 3327954 -185951600 - MER45 DNA AcHobo 0 1581 1515 2289 192 51 2 chr6 3328738 3329207 -185950347 - L1MB3 LINE L1 -2 6181 5690 1852 157 42 37 chr6 3330252 3330455 -185949099 - MLT1B LTR MaLR -6 384 177 2474 76 0 3 chr6 3330455 3330756 -185948798 - AluSg SINE Alu -10 300 1 1852 157 42 37 chr6 3330756 3330934 -185948620 - MLT1B LTR MaLR -213 177 1 196 302 19 0 chr6 3331126 3331179 -185948375 + L2 LINE L2 2720 2773 -541 225 114 139 101 chr6 3331792 3331871 -185947683 + MER5B DNA MER1_type 21 102 -76 870 145 18 84 chr6 3331875 3332102 -185947452 + MER20 DNA MER1_type 8 219 0 1380 103 0 0 chr6 3333262 3333436 -185946118 + AluSq SINE Alu 129 302 -11 21 0 0 0 chr6 3333622 3333643 -185945911 + AT_rich Low_complexity Low_complexity 1 21 0 2355 78 0 38 chr6 3333674 3333994 -185945560 - AluY SINE Alu -3 308 1 240 233 0 17 chr6 3334604 3334664 -185944890 - L2 LINE L2 -14 3299 3241 2043 102 62 0 chr6 3334956 3335231 -185944323 + AluSq SINE Alu 3 294 -19 1698 158 80 19 chr6 3335335 3335696 -185943858 - MLT1B LTR MaLR 0 390 8 464 299 0 22 chr6 3335979 3336116 -185943438 + G-rich Low_complexity Low_complexity 3 136 0 2205 101 17 0 chr6 3336768 3337056 -185942498 - AluSg SINE Alu -17 293 1 216 0 0 0 chr6 3337057 3337081 -185942473 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 2176 94 7 0 chr6 3337081 3337357 -185942197 - AluSx SINE Alu -34 278 1 1001 269 134 5 chr6 3337365 3337782 -185941772 - L1ME2 LINE L1 0 6164 5694 304 314 122 17 chr6 3339181 3339353 -185940201 + MIR SINE MIR 14 203 -59 2487 99 3 0 chr6 3340293 3340605 -185938949 - AluSp SINE Alu 0 313 1 2878 133 58 0 chr6 3341330 3341826 -185937728 - L1MB3 LINE L1 -10 6173 5649 429 218 0 0 chr6 3342429 3342516 -185937038 - MER103 DNA DNA -45 121 35 23 0 0 0 chr6 3342694 3342717 -185936837 + AT_rich Low_complexity Low_complexity 1 23 0 321 354 82 10 chr6 3344125 3344331 -185935223 - MIR SINE MIR -26 236 16 186 143 0 0 chr6 3344699 3344734 -185934820 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 283 290 75 37 chr6 3345095 3345202 -185934352 + MIR SINE MIR 42 152 -56 403 301 74 25 chr6 3345575 3345738 -185933816 + MIR SINE MIR 86 256 -6 2604 60 7 0 chr6 3345806 3346107 -185933447 + AluY SINE Alu 1 303 -8 31 26 0 0 chr6 3346257 3346295 -185933259 + AT_rich Low_complexity Low_complexity 1 38 0 191 286 0 0 chr6 3346448 3346497 -185933057 - L2 LINE L2 -76 3237 3189 1149 230 0 9 chr6 3346497 3346723 -185932831 - MER58A DNA MER1_type 0 224 1 209 146 21 0 chr6 3347762 3347810 -185931744 + CT-rich Low_complexity Low_complexity 2 50 0 283 272 41 35 chr6 3349683 3349852 -185929702 - L1ME4a LINE L1 0 6121 5952 562 272 32 10 chr6 3349893 3350175 -185929379 - L1ME4a LINE L1 -251 5870 5541 2028 156 16 0 chr6 3350260 3350567 -185928987 - AluSx SINE Alu 0 312 1 212 287 111 37 chr6 3351390 3351498 -185928056 - L2 LINE L2 -614 2700 2585 256 167 26 64 chr6 3351556 3351634 -185927920 - LTR33A LTR ERVL -9 514 440 198 280 0 32 chr6 3352090 3352183 -185927371 - L2 LINE L2 -738 2576 2487 181 385 0 51 chr6 3352345 3352423 -185927131 + L3b LINE CR1 1503 1576 -7 635 239 31 6 chr6 3353694 3353853 -185925701 - MER5A DNA MER1_type -26 163 1 642 266 74 29 chr6 3356232 3356476 -185923078 - MIR SINE MIR 0 262 8 207 0 0 0 chr6 3356645 3356668 -185922886 + (T)n Simple_repeat Simple_repeat 1 23 0 501 283 0 7 chr6 3358167 3358312 -185921242 + LTR33 LTR ERVL 367 510 -11 1792 213 82 25 chr6 3358312 3358790 -185920764 - MLT1D LTR MaLR 0 505 1 348 289 72 62 chr6 3358911 3359105 -185920449 - MIR SINE MIR -44 218 23 915 197 118 9 chr6 3359752 3359980 -185919574 - L1MB8 LINE L1 0 6178 5926 197 273 0 0 chr6 3360827 3360871 -185918683 + MIR3 SINE MIR 117 160 -48 355 313 44 6 chr6 3362710 3362870 -185916684 + MER117 DNA MER1_type 1 166 -31 1197 181 59 0 chr6 3363212 3363416 -185916138 - MER58A DNA MER1_type -8 216 1 333 118 0 0 chr6 3364812 3364863 -185914691 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr6 3365165 3365186 -185914368 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr6 3365744 3365774 -185913780 + AT_rich Low_complexity Low_complexity 1 30 0 2052 99 7 17 chr6 3366109 3366411 -185913143 - AluSg SINE Alu -11 299 1 259 393 27 0 chr6 3367395 3367507 -185912047 + MIR SINE MIR 33 147 -61 192 351 84 15 chr6 3369043 3369245 -185910309 - L2 LINE L2 -544 2770 2555 192 311 67 25 chr6 3369441 3369560 -185909994 - L2 LINE L2 -935 2379 2256 317 107 58 223 chr6 3369961 3370024 -185909530 - L1MB4 LINE L1 0 6180 6145 2167 111 13 0 chr6 3370024 3370330 -185909224 - AluSx SINE Alu -2 310 1 317 107 58 223 chr6 3370330 3370387 -185909167 - L1MB4 LINE L1 -35 6145 6080 277 286 77 16 chr6 3370705 3370831 -185908723 + MIR SINE MIR 34 162 -46 2245 78 7 3 chr6 3371212 3371505 -185908049 + AluSq SINE Alu 1 294 -19 1686 166 3 16 chr6 3372327 3372634 -185906920 - AluJo SINE Alu -1 311 9 189 0 0 0 chr6 3372914 3372935 -185906619 + (A)n Simple_repeat Simple_repeat 1 21 0 292 263 19 113 chr6 3373737 3373897 -185905657 - MIR SINE MIR -1 261 117 330 246 228 0 chr6 3374080 3374194 -185905360 - MIR SINE MIR -41 221 82 3689 127 93 63 chr6 3374198 3374814 -185904740 - LTR1 LTR ERV1 0 785 140 2097 95 41 0 chr6 3374814 3375109 -185904445 - AluSc SINE Alu -2 307 1 3689 127 93 63 chr6 3375109 3375242 -185904312 - LTR1 LTR ERV1 -645 140 13 258 330 0 10 chr6 3376664 3376767 -185902787 - L2 LINE L2 -527 2787 2686 644 245 57 10 chr6 3377859 3378051 -185901503 + MER3 DNA MER1_type 1 201 -8 1598 280 167 17 chr6 3378090 3378951 -185900603 + L2 LINE L2 1744 2733 -581 294 221 139 25 chr6 3378962 3379084 -185900470 - MLT1J LTR MaLR 0 511 376 750 274 135 0 chr6 3379120 3379350 -185900204 - MLT1J LTR MaLR -250 261 1 498 309 88 62 chr6 3379457 3379842 -185899712 + L2 LINE L2 2919 3313 0 234 242 81 0 chr6 3379925 3379987 -185899567 - MIR3 SINE MIR -10 198 132 * 410 353 64 5 chr6 3379978 3380165 -185899389 + L3 LINE CR1 403 600 -977 3127 158 19 73 chr6 3381958 3382094 -185897460 - L1MB3 LINE L1 -3 6180 6038 2192 108 0 0 chr6 3382094 3382401 -185897153 - AluSq SINE Alu -3 310 4 3127 158 19 73 chr6 3382401 3383019 -185896535 - L1MB3 LINE L1 -145 6038 5467 241 226 0 0 chr6 3383057 3383110 -185896444 + (CATTT)n Simple_repeat Simple_repeat 4 56 0 1865 231 104 29 chr6 3383679 3384238 -185895316 - L1MD3 LINE L1 -21 7974 7374 198 319 52 9 chr6 3384625 3384741 -185894813 + MIR SINE MIR 33 153 -55 2865 161 38 21 chr6 3385811 3385858 -185893696 - L1MB3 LINE L1 -4 6179 6134 1847 156 0 10 chr6 3385858 3386159 -185893395 - AluSx SINE Alu -14 298 1 2865 161 38 21 chr6 3386159 3386669 -185892885 - L1MB3 LINE L1 -49 6134 5613 269 355 89 23 chr6 3387444 3387658 -185891896 + L2 LINE L2 2683 2910 -404 363 271 126 37 chr6 3388126 3388320 -185891234 - L1ME3A LINE L1 -204 5960 5754 1125 215 42 0 chr6 3388584 3388798 -185890756 - MER58A DNA MER1_type -1 223 1 476 301 47 28 chr6 3389620 3389833 -185889721 - MIR SINE MIR -26 236 20 877 307 65 3 chr6 3390383 3390692 -185888862 + MLT1I LTR MaLR 82 409 0 192 179 0 0 chr6 3391402 3391441 -185888113 + (CA)n Simple_repeat Simple_repeat 1 39 0 2493 64 0 3 chr6 3392431 3392744 -185886810 + AluSq SINE Alu 1 312 -1 1221 192 42 0 chr6 3394119 3394333 -185885221 - MER58A DNA MER1_type -1 223 1 192 267 67 44 chr6 3394664 3394754 -185884800 + L2 LINE L2 3222 3313 0 913 227 96 9 chr6 3397293 3397522 -185882032 + MIR SINE MIR 3 251 -11 431 136 19 29 chr6 3397686 3397789 -185881765 + CT-rich Low_complexity Low_complexity 2 103 0 2839 180 39 2 chr6 3397903 3398443 -185881111 - MER68 LTR ERV1 0 562 3 694 251 72 43 chr6 3399234 3399397 -185880157 + MIR SINE MIR 21 195 -67 727 157 51 56 chr6 3399397 3399575 -185879979 + MER104 DNA MER2_type 1 177 -3 694 251 72 43 chr6 3399575 3399646 -185879908 + MIR SINE MIR 195 262 0 412 324 63 0 chr6 3399701 3399843 -185879711 - MIR SINE MIR -52 210 60 1122 213 102 22 chr6 3399851 3400166 -185879388 + MER58B DNA MER1_type 1 340 -1 189 182 0 0 chr6 3400235 3400268 -185879286 + L2 LINE L2 3272 3304 -9 2253 92 0 0 chr6 3401686 3401981 -185877573 - AluSx SINE Alu -17 295 1 295 195 104 26 chr6 3403709 3403786 -185875768 + MIR SINE MIR 66 148 -114 271 277 161 0 chr6 3404851 3404981 -185874573 - MIR SINE MIR -32 230 80 2492 86 0 13 chr6 3405028 3405341 -185874213 - AluSg SINE Alu -1 309 1 2359 109 0 10 chr6 3406040 3406353 -185873201 - AluSx SINE Alu -2 310 1 250 357 27 32 chr6 3406968 3407153 -185872401 + MIR SINE MIR 33 216 -46 2369 93 6 3 chr6 3408957 3409268 -185870286 - AluSx SINE Alu 0 312 1 234 224 66 40 chr6 3409305 3409381 -185870173 + MER103 DNA DNA 56 133 -33 1634 138 41 3 chr6 3411099 3411418 -185868136 - L1MB3 LINE L1 0 6183 5853 2337 198 8 25 chr6 3411479 3411990 -185867564 - L1MB3 LINE L1 -328 5855 5354 3309 182 9 12 chr6 3412643 3413308 -185866246 - L1MB1 LINE L1 -1 6167 5505 252 0 0 0 chr6 3414305 3414333 -185865221 + (T)n Simple_repeat Simple_repeat 1 28 0 181 221 52 52 chr6 3414516 3414593 -185864961 + MIR SINE MIR 125 201 -61 212 128 0 21 chr6 3415388 3415435 -185864119 + (CCCCCT)n Simple_repeat Simple_repeat 3 48 0 323 296 0 0 chr6 3418966 3419064 -185860490 + (TG)n Simple_repeat Simple_repeat 1 98 0 585 199 0 0 chr6 3419082 3419253 -185860301 + (TG)n Simple_repeat Simple_repeat 2 172 0 1137 220 49 70 chr6 3420860 3421205 -185858349 - MER58B DNA MER1_type 0 341 4 466 209 147 63 chr6 3421210 3421401 -185858153 - MER112 DNA MER1_type -1 259 53 261 262 64 78 chr6 3423319 3423460 -185856094 - L2 LINE L2 -76 3237 3099 315 241 93 65 chr6 3424390 3424498 -185855056 + L1ME4a LINE L1 5927 6037 -84 23 33 0 0 chr6 3424923 3424953 -185854601 + AT_rich Low_complexity Low_complexity 1 30 0 2309 103 0 0 chr6 3425121 3425413 -185854141 - AluSg SINE Alu -16 294 3 264 59 0 0 chr6 3426875 3426909 -185852645 + (CA)n Simple_repeat Simple_repeat 2 35 0 300 302 60 19 chr6 3429271 3429536 -185850018 - L1MC4 LINE L1 -1 8041 7766 1691 104 146 0 chr6 3430131 3430391 -185849163 + AluSx SINE Alu 1 298 -14 310 266 179 39 chr6 3430474 3430703 -185848851 - L2 LINE L2 -61 3252 2992 1708 222 182 27 chr6 3430711 3431189 -185848365 - LTR12 LTR ERV1 0 714 163 1850 146 110 55 chr6 3431200 3431673 -185847881 - pTR5 LTR ERV1 -1197 1241 743 1586 121 9 9 chr6 3431695 3431918 -185847636 - AluSx SINE Alu -37 275 53 5420 138 287 36 chr6 3433529 3434886 -185844668 - pTR5 LTR ERV1 0 2438 742 555 318 23 17 chr6 3435026 3435199 -185844355 - L2 LINE L2 0 3272 3099 246 190 17 0 chr6 3435303 3435361 -185844193 + MER5A DNA MER1_type 48 106 -83 225 317 77 19 chr6 3435638 3435742 -185843812 + MIR SINE MIR 108 217 -45 2336 111 0 0 chr6 3435792 3436090 -185843464 - AluSc SINE Alu -11 298 1 222 305 29 48 chr6 3436969 3437074 -185842480 - MIR SINE MIR -60 202 100 21 82 0 0 chr6 3437181 3437230 -185842324 + AT_rich Low_complexity Low_complexity 1 49 0 2138 125 0 7 chr6 3437377 3437674 -185841880 - AluSx SINE Alu -17 295 1 2350 104 0 0 chr6 3438172 3438471 -185841083 - AluSc SINE Alu -8 301 3 2967 156 17 13 chr6 3438880 3438898 -185840656 - LTR45 LTR ERV1 -2 523 507 2371 101 59 0 chr6 3438898 3439254 -185840300 - MER51B LTR ERV1 0 377 1 2967 156 17 13 chr6 3439254 3439756 -185839798 - LTR45 LTR ERV1 -18 507 1 23 0 0 0 chr6 3440666 3440689 -185838865 + GC_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr6 3441139 3441184 -185838370 + GC_rich Low_complexity Low_complexity 1 45 0 30 45 0 0 chr6 3441268 3441312 -185838242 + GC_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr6 3442138 3442166 -185837388 + GC_rich Low_complexity Low_complexity 1 28 0 261 284 52 26 chr6 3443435 3443551 -185836003 + L3 LINE CR1 1178 1296 -281 296 264 66 36 chr6 3444559 3444726 -185834828 + LTR50 LTR ERVL 320 672 -32 929 233 197 46 chr6 3444966 3445769 -185833785 - L2 LINE L2 -3 3310 2346 302 369 87 34 chr6 3447304 3447510 -185832044 + MIR SINE MIR 16 232 -30 2212 108 0 10 chr6 3447883 3448188 -185831366 + AluSx SINE Alu 8 309 -3 497 195 188 0 chr6 3452386 3452535 -185827019 - MER53 DNA DNA -7 182 6 255 69 0 155 chr6 3453815 3453873 -185825681 - MADE1 DNA Mariner -1 79 31 22 0 0 0 chr6 3454081 3454103 -185825451 + AT_rich Low_complexity Low_complexity 1 22 0 3273 152 20 0 chr6 3456970 3457529 -185822025 - L1MA6 LINE L1 -1 6299 5730 1614 109 31 97 chr6 3457529 3457786 -185821768 - L1MA6 LINE L1 -1263 4883 4653 1739 160 87 0 chr6 3457786 3458073 -185821481 - AluJb SINE Alu 0 312 1 1614 109 31 97 chr6 3458073 3458165 -185821389 - L1MA6 LINE L1 -1493 4653 4557 184 255 0 0 chr6 3458692 3458739 -185820815 + L3 LINE CR1 781 827 -750 1472 286 42 25 chr6 3460724 3461323 -185818231 + L1MC4a LINE L1 7072 7680 -128 484 192 233 17 chr6 3461824 3461996 -185817558 - MIR SINE MIR -14 248 40 269 311 44 0 chr6 3464157 3464247 -185815307 - MIR3 SINE MIR -11 197 104 1699 87 79 0 chr6 3464480 3464732 -185814822 + L1PB2 LINE L1 5878 6149 -2 300 269 46 28 chr6 3468795 3468903 -185810651 + L2 LINE L2 3204 3313 0 21 36 0 0 chr6 3470218 3470246 -185809308 + AT_rich Low_complexity Low_complexity 1 28 0 652 262 51 33 chr6 3471065 3471398 -185808156 - Charlie8 DNA MER1_type -2141 276 78 7889 147 81 64 chr6 3471547 3473317 -185806237 + pTR5 LTR ERV1 65 2424 -14 2326 185 43 13 chr6 3474021 3474552 -185805002 - MER74A LTR ERVL -4 554 8 1528 188 4 15 chr6 3476196 3476468 -185803086 - AluJo SINE Alu -14 298 30 505 267 125 11 chr6 3476472 3476648 -185802906 - L2 LINE L2 -1047 2267 2072 594 292 42 17 chr6 3476775 3477011 -185802543 - L2 LINE L2 -1230 2084 1843 1002 265 138 19 chr6 3477011 3477547 -185802007 - L1MC4a LINE L1 -1690 6118 5519 325 292 42 33 chr6 3477552 3477672 -185801882 - L1MC/D LINE L1 -2046 5762 5642 326 240 53 59 chr6 3477728 3478008 -185801546 - MLT1H LTR MaLR 0 549 229 249 211 0 18 chr6 3478121 3478178 -185801376 - MLT1H LTR MaLR -488 61 6 22 0 0 0 chr6 3478442 3478464 -185801090 + AT_rich Low_complexity Low_complexity 1 22 0 271 305 0 24 chr6 3478946 3479028 -185800526 - L2 LINE L2 -17 3255 3176 249 340 19 10 chr6 3479498 3479601 -185799953 + L2 LINE L2 3207 3310 -3 221 233 0 0 chr6 3480382 3480425 -185799129 + CT-rich Low_complexity Low_complexity 4 46 0 333 0 0 0 chr6 3480428 3480465 -185799089 + (CA)n Simple_repeat Simple_repeat 2 38 0 971 164 13 6 chr6 3480580 3480739 -185798815 - AluJb SINE Alu -19 293 134 2214 121 3 6 chr6 3481066 3481380 -185798174 - AluSq SINE Alu 0 313 1 1077 76 8 0 chr6 3481383 3481515 -185798039 - AluSq/x SINE Alu -179 133 1 667 304 65 5 chr6 3481568 3481785 -185797769 + MIR SINE MIR 2 231 -31 321 331 99 36 chr6 3483048 3483350 -185796204 - L2 LINE L2 -43 3229 2909 1380 189 34 34 chr6 3483412 3483703 -185795851 + AluJo SINE Alu 1 291 -21 344 345 31 11 chr6 3484919 3485110 -185794444 + L2 LINE L2 727 921 -2393 310 221 9 124 chr6 3485130 3485243 -185794311 + L1MC4 LINE L1 6607 6706 -1336 * 344 300 0 11 chr6 3485185 3485275 -185794279 - L1MC4 LINE L1 -1340 6702 6614 4440 190 54 37 chr6 3485288 3486793 -185792761 - L1MB3 LINE L1 -6 6177 4627 287 278 268 20 chr6 3486799 3486997 -185792557 + L2 LINE L2 923 1169 -2145 233 378 0 0 chr6 3487032 3487114 -185792440 - MIR SINE MIR 0 262 181 601 329 133 16 chr6 3487122 3487624 -185791930 + L2 LINE L2 1165 1725 -1589 959 310 64 37 chr6 3487627 3488298 -185791256 + L2 LINE L2 2328 3015 -257 2193 140 65 0 chr6 3488312 3488684 -185790870 - MSTA LTR MaLR 0 428 33 895 98 379 15 chr6 3488684 3488887 -185790667 + LTR12 LTR ERV1 6 282 -432 338 242 11 0 chr6 3488894 3488985 -185790569 + LTR30 LTR ERV1 552 643 -79 682 106 10 0 chr6 3488985 3489089 -185790465 + LTR12 LTR ERV1 480 584 -130 206 329 13 26 chr6 3489288 3489364 -185790190 + L2 LINE L2 3179 3253 -19 215 274 6 0 chr6 3489930 3490105 -185789449 + (CA)n Simple_repeat Simple_repeat 2 177 0 2476 200 58 97 chr6 3490422 3491178 -185788376 - MER50 LTR ERV1 -7 727 1 418 246 136 93 chr6 3491359 3491595 -185787959 - MIR SINE MIR 0 262 17 248 222 111 0 chr6 3491792 3491846 -185787708 + MER91A DNA MER1_type 123 182 -14 220 324 155 7 chr6 3491867 3492009 -185787545 + L2 LINE L2 3104 3266 -6 464 337 79 0 chr6 3492300 3492478 -185787076 + MIR SINE MIR 47 238 -24 206 184 102 0 chr6 3492842 3492891 -185786663 + L2 LINE L2 3012 3065 -248 1926 251 66 45 chr6 3492938 3493325 -185786229 - MER21B LTR ERV1 -124 739 329 3006 157 46 4 chr6 3493325 3493829 -185785725 + LTR45 LTR ERV1 1 525 0 1926 251 66 45 chr6 3493829 3494151 -185785403 - MER21B LTR ERV1 -534 329 15 363 299 45 19 chr6 3494171 3494328 -185785226 + L2 LINE L2 3120 3280 -33 3532 67 25 2 chr6 3494372 3494847 -185784707 - LTR19A LTR ERV1 0 486 1 30 27 0 0 chr6 3496445 3496482 -185783072 + AT_rich Low_complexity Low_complexity 1 37 0 625 116 87 43 chr6 3497046 3497184 -185782370 - L1MA4 LINE L1 -6 6294 6151 736 96 37 30 chr6 3497184 3497267 -185782287 + L1MA4 LINE L1 6032 6118 -182 2196 166 22 49 chr6 3497267 3497505 -185782049 - Tigger2a DNA MER2_type -2274 434 212 1856 184 0 3 chr6 3497505 3497798 -185781756 + AluJo SINE Alu 5 296 -16 2196 166 22 49 chr6 3497798 3498004 -185781550 - Tigger2a DNA MER2_type -2496 212 2 736 96 37 30 chr6 3498004 3498055 -185781499 + L1MA4 LINE L1 6118 6167 -133 2461 250 43 11 chr6 3498061 3498766 -185780788 - L1MC4a LINE L1 0 7808 7082 2075 92 64 27 chr6 3499728 3500023 -185779531 - AluSc SINE Alu -3 306 1 1874 231 97 24 chr6 3500065 3500645 -185778909 - L1MD3 LINE L1 -856 7139 6518 2323 89 0 0 chr6 3500667 3500958 -185778596 + AluY SINE Alu 1 291 -20 2652 39 0 13 chr6 3501491 3501802 -185777752 - AluY SINE Alu -4 307 1 341 285 68 50 chr6 3502339 3502854 -185776700 + L1MEd LINE L1 680 1203 -4916 318 301 47 25 chr6 3503001 3503237 -185776317 + L1MEd LINE L1 1376 1616 -4513 429 296 91 61 chr6 3503326 3504003 -185775551 + L1MEd LINE L1 1791 2533 -3596 1824 220 97 14 chr6 3505041 3505578 -185773976 + MLT1F1 LTR MaLR 1 567 0 250 262 63 87 chr6 3505717 3505843 -185773711 + L2 LINE L2 3140 3262 -10 1154 165 29 25 chr6 3505981 3506223 -185773331 + L1ME1 LINE L1 5808 6050 -116 305 281 22 0 chr6 3507005 3507094 -185772460 + MIR SINE MIR 117 207 -55 79 70 0 0 chr6 3507499 3507655 -185771899 + AT_rich Low_complexity Low_complexity 1 156 0 2131 99 11 3 chr6 3507719 3508002 -185771552 - AluSp SINE Alu -26 287 3 201 74 0 0 chr6 3508786 3508813 -185770741 + (CAATT)n Simple_repeat Simple_repeat 2 28 0 1412 193 24 17 chr6 3509764 3510087 -185769467 + L1MD3 LINE L1 7577 7995 0 395 381 55 25 chr6 3510399 3510803 -185768751 + L3 LINE CR1 114 529 -1048 1650 203 27 63 chr6 3510808 3511385 -185768169 + L1MB7 LINE L1 5792 6334 0 748 121 0 0 chr6 3511735 3511851 -185767703 + L1MA7 LINE L1 6159 6274 -17 582 338 103 11 chr6 3512536 3512903 -185766651 - LTR33A LTR ERVL -56 467 67 2248 233 26 6 chr6 3513892 3514433 -185765121 - L1M4 LINE L1 -1776 4370 3819 38741 84 12 7 chr6 3514549 3520669 -185758885 + L1PA6 LINE L1 11 6154 0 540 224 82 35 chr6 3521970 3522140 -185757414 + MER5B DNA MER1_type 1 178 0 288 350 10 0 chr6 3522181 3522281 -185757273 - MER81 DNA DNA -13 101 1 339 280 26 90 chr6 3522295 3522484 -185757070 - MER5B DNA MER1_type 0 178 2 926 158 0 23 chr6 3522542 3522713 -185756841 + MER5A DNA MER1_type 23 189 0 188 299 164 28 chr6 3523071 3523199 -185756355 + MIR SINE MIR 5 165 -97 393 22 0 0 chr6 3523199 3523245 -185756309 + (TAA)n Simple_repeat Simple_repeat 2 47 0 188 299 164 28 chr6 3523245 3523293 -185756261 + MIR SINE MIR 165 205 -57 7093 236 129 18 chr6 3523374 3523651 -185755903 - L1ME LINE L1 -634 5528 5283 212 59 29 0 chr6 3523651 3523685 -185755869 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 7093 236 129 18 chr6 3523685 3526228 -185753326 - L1ME LINE L1 -879 5283 2389 306 234 96 0 chr6 3526309 3526403 -185753151 - MIR SINE MIR -70 192 90 187 323 0 0 chr6 3528272 3528337 -185751217 - MIR SINE MIR -40 222 158 392 317 47 27 chr6 3528894 3529307 -185750247 + LTR67 LTR ERVL 24 522 -35 188 278 83 53 chr6 3529345 3529478 -185750076 - MIR SINE MIR -116 146 10 1515 211 95 91 chr6 3529785 3530513 -185749041 - L1MC5 LINE L1 -32 7929 7199 601 224 41 61 chr6 3530514 3530710 -185748844 + MER106A DNA MER1_type 2 193 -43 348 276 23 0 chr6 3531555 3531642 -185747912 - MIR SINE MIR -104 158 70 207 127 0 0 chr6 3531676 3531718 -185747836 - MIR SINE MIR -62 146 105 227 277 145 0 chr6 3532641 3532724 -185746830 - L2 LINE L2 -28 3285 3191 432 300 57 45 chr6 3532857 3533104 -185746450 + MIR SINE MIR 13 262 0 1226 226 84 45 chr6 3534180 3534561 -185744993 + MSTD LTR MaLR 1 396 0 304 310 35 44 chr6 3534644 3534847 -185744707 + L2 LINE L2 2885 3085 -187 579 285 124 24 chr6 3535372 3535621 -185743933 + MLT1L LTR MaLR 1 274 -341 433 256 89 28 chr6 3535734 3535914 -185743640 + MLT1L LTR MaLR 421 611 -4 799 187 238 51 chr6 3535940 3536255 -185743299 + MLT1A2 LTR MaLR 1 374 0 270 0 0 0 chr6 3536841 3536871 -185742683 + (TG)n Simple_repeat Simple_repeat 2 31 0 203 161 0 0 chr6 3537571 3537602 -185741952 + A-rich Low_complexity Low_complexity 5 35 0 213 330 54 18 chr6 3538510 3538622 -185740932 + L2 LINE L2 3153 3268 -4 378 285 93 0 chr6 3539009 3539160 -185740394 + MLT1L LTR MaLR 451 615 0 2327 109 24 24 chr6 3539255 3539630 -185739924 - THE1C LTR MaLR 0 375 1 3456 182 44 4 chr6 3539704 3540387 -185739167 + L1MB2 LINE L1 5460 6169 -2 631 199 93 9 chr6 3540678 3540861 -185738693 + MER20 DNA MER1_type 15 212 -7 440 279 93 0 chr6 3541145 3541285 -185738269 + MER3 DNA MER1_type 57 209 0 182 91 30 0 chr6 3541487 3541520 -185738034 + CT-rich Low_complexity Low_complexity 4 37 0 2336 78 113 0 chr6 3542943 3543278 -185736276 - MER51B LTR ERV1 -4 373 1 533 286 57 50 chr6 3543278 3543558 -185735996 - MLT1J LTR MaLR -1 510 229 2419 100 0 0 chr6 3544159 3544469 -185735085 + AluY SINE Alu 1 310 -1 2416 86 0 7 chr6 3544690 3544993 -185734561 + AluSx SINE Alu 1 301 -11 376 265 163 21 chr6 3545048 3545380 -185734174 - HAL1 LINE L1 -120 2387 2009 3810 239 49 23 chr6 3545858 3546310 -185733244 + MER45B DNA AcHobo 1 440 -1141 2619 48 0 6 chr6 3546310 3546623 -185732931 - AluY SINE Alu 0 311 1 3810 239 49 23 chr6 3546623 3546791 -185732763 + MER45B DNA AcHobo 440 602 -979 2150 106 7 3 chr6 3546791 3547109 -185732445 + AluSg SINE Alu 1 319 0 3810 239 49 23 chr6 3547109 3547491 -185732063 + MER45B DNA AcHobo 602 1032 -8 198 118 0 0 chr6 3548440 3548474 -185731080 + (A)n Simple_repeat Simple_repeat 1 34 0 4330 177 24 21 chr6 3549743 3549792 -185729762 - L1MB3 LINE L1 -2 6181 6134 2125 80 0 4 chr6 3549792 3550055 -185729499 - AluY SINE Alu -22 289 28 4330 177 24 21 chr6 3550055 3550892 -185728662 - L1MB3 LINE L1 -49 6134 5293 5169 152 43 6 chr6 3550911 3551825 -185727729 - L1MA8 LINE L1 -21 6270 5323 2134 184 0 13 chr6 3551833 3552224 -185727330 - L1MA8 LINE L1 -1779 4367 3982 2364 109 3 0 chr6 3552519 3552830 -185726724 + AluSx SINE Alu 1 312 0 2155 255 94 41 chr6 3552853 3554218 -185725336 - L1ME3A LINE L1 -34 6136 4699 846 193 59 5 chr6 3554444 3554631 -185724923 - L1MB4 LINE L1 -2 6178 5982 1891 166 3 7 chr6 3556013 3556309 -185723245 + AluJo SINE Alu 1 295 -17 336 322 76 6 chr6 3557308 3557479 -185722075 - MIR SINE MIR 0 262 80 431 332 68 14 chr6 3557511 3557731 -185721823 - L1MC4a LINE L1 -1910 5898 5667 248 278 0 0 chr6 3557731 3557821 -185721733 + L1MC4 LINE L1 6614 6703 -1339 * 273 239 0 22 chr6 3557787 3557879 -185721675 - L1MC4 LINE L1 -1339 6703 6614 336 346 32 43 chr6 3557896 3557986 -185721568 - L1MC4a LINE L1 -473 5648 5559 2814 188 26 6 chr6 3557986 3558530 -185721024 - L1MB5 LINE L1 -7 6167 5613 336 346 32 43 chr6 3558530 3558715 -185720839 - L1MC4a LINE L1 -562 5559 5420 233 310 14 0 chr6 3558741 3558812 -185720742 + MLT1L LTR MaLR 4 75 -540 289 295 69 42 chr6 3558867 3559069 -185720485 + MER20B DNA MER1_type 5 215 -4 1063 262 144 63 chr6 3559080 3559703 -185719851 - MER21B LTR ERV1 -167 696 23 245 338 0 0 chr6 3559733 3559804 -185719750 + MLT1J1 LTR MaLR 71 141 -305 302 237 72 10 chr6 3560022 3560119 -185719435 + MLT1L LTR MaLR 513 615 0 431 276 32 42 chr6 3560119 3560430 -185719124 - L1MC4a LINE L1 -752 5394 5087 4060 158 29 10 chr6 3560491 3561182 -185718372 + MER44D DNA MER2_type 2 705 0 515 305 110 13 chr6 3561292 3561528 -185718026 - MIR SINE MIR 0 262 4 2282 74 10 0 chr6 3561635 3561931 -185717623 + AluSx SINE Alu 1 299 -13 2046 218 35 29 chr6 3562125 3562612 -185716942 - MER74A LTR ERVL -46 512 23 2242 67 0 20 chr6 3562800 3563100 -185716454 - AluY SINE Alu -17 294 1 450 267 79 12 chr6 3563138 3563303 -185716251 + MLT1K LTR MaLR 389 564 -24 317 288 161 0 chr6 3564990 3565108 -185714446 - MIR SINE MIR -101 161 25 1698 144 0 0 chr6 3565463 3565733 -185713821 + AluJb SINE Alu 16 285 -27 332 83 73 0 chr6 3565752 3565848 -185713706 + (TA)n Simple_repeat Simple_repeat 1 103 0 300 277 36 0 chr6 3565876 3565959 -185713595 - L1MC4 LINE L1 -1333 6709 6624 518 157 0 0 chr6 3567206 3567289 -185712265 - MER53 DNA DNA 0 189 107 343 270 11 11 chr6 3567679 3567768 -185711786 - MER5A DNA MER1_type -83 106 18 230 109 0 219 chr6 3567833 3567897 -185711657 + MLT1B LTR MaLR 1 50 -340 1090 156 29 10 chr6 3567904 3568109 -185711445 + MLT1B LTR MaLR 182 390 0 2107 179 47 38 chr6 3568974 3569389 -185710165 + L1MB3 LINE L1 5711 6132 -51 2090 112 3 0 chr6 3569389 3569683 -185709871 + AluSq SINE Alu 1 295 -18 2107 179 47 38 chr6 3569683 3569736 -185709818 + L1MB3 LINE L1 6132 6183 0 2337 94 0 0 chr6 3570579 3570887 -185708667 + AluSp SINE Alu 1 308 -5 494 194 31 70 chr6 3571953 3572082 -185707472 - MER112 DNA MER1_type -9 251 128 250 222 19 0 chr6 3572135 3572189 -185707365 + MER4-int LTR ERV1 1111 1165 -5433 297 206 29 0 chr6 3572217 3572319 -185707235 + (TG)n Simple_repeat Simple_repeat 2 106 0 243 0 0 0 chr6 3572444 3572471 -185707083 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 1662 115 13 0 chr6 3572471 3572706 -185706848 - AluSx SINE Alu -32 280 43 1304 164 5 5 chr6 3574225 3574445 -185705109 + AluJo SINE Alu 73 292 -20 26 30 0 0 chr6 3575459 3575492 -185704062 + AT_rich Low_complexity Low_complexity 1 33 0 526 199 12 24 chr6 3577669 3577835 -185701719 + CT-rich Low_complexity Low_complexity 1 164 0 244 67 0 44 chr6 3578001 3578046 -185701508 + (TTCC)n Simple_repeat Simple_repeat 1 43 0 1071 212 104 34 chr6 3578058 3578327 -185701227 - AluJo SINE Alu -13 289 2 978 191 27 45 chr6 3578346 3578566 -185700988 - MER20 DNA MER1_type -2 217 2 242 313 40 30 chr6 3578811 3578910 -185700644 + MIR SINE MIR 16 115 -93 5558 55 7 0 chr6 3578912 3579597 -185699957 - L1PA8 LINE L1 0 6172 5483 436 349 99 71 chr6 3580503 3580867 -185698687 - L2 LINE L2 -9 3263 2890 2127 112 0 7 chr6 3580983 3581287 -185698267 + AluSg SINE Alu 1 302 -8 363 325 21 5 chr6 3581507 3581698 -185697856 - L2 LINE L2 -824 2490 2297 274 308 143 0 chr6 3582115 3582206 -185697348 - L2 LINE L2 -20 3252 3149 922 44 0 0 chr6 3582207 3582320 -185697234 + AluY SINE Alu 183 295 -16 236 236 153 42 chr6 3583045 3583117 -185696437 - L2 LINE L2 -26 3246 3167 1450 177 18 201 chr6 3584845 3585573 -185693981 - MER45R DNA AcHobo -983 598 4 365 39 20 0 chr6 3586535 3586586 -185692968 + (TG)n Simple_repeat Simple_repeat 1 52 0 24 0 0 0 chr6 3587208 3587232 -185692322 + AT_rich Low_complexity Low_complexity 1 24 0 200 321 24 0 chr6 3587360 3587444 -185692110 + (TATG)n Simple_repeat Simple_repeat 1 86 0 2494 173 19 17 chr6 3588268 3588731 -185690823 - MLT2C2 LTR ERVL 0 464 1 16901 189 42 79 chr6 3588916 3592449 -185687105 + L1M2 LINE L1 8 3544 -3304 1237 209 17 30 chr6 3592449 3592751 -185686803 + AluJo SINE Alu 13 310 -2 16901 189 42 79 chr6 3592751 3594624 -185684930 + L1M2 LINE L1 3544 5483 -1365 1791 118 24 3 chr6 3594629 3594917 -185684637 + L1MA4A LINE L1 6006 6299 -4 671 288 123 5 chr6 3594931 3595150 -185684404 + MIR SINE MIR 5 249 -13 230 316 45 7 chr6 3596995 3597150 -185682404 + (CATATA)n Simple_repeat Simple_repeat 6 166 0 207 211 0 0 chr6 3597824 3597862 -185681692 + L2 LINE L2 3230 3267 -5 498 321 87 11 chr6 3597927 3598158 -185681396 + MIR SINE MIR 11 262 0 312 305 169 7 chr6 3598731 3598885 -185680669 - MER5A DNA MER1_type -4 185 7 23 0 0 0 chr6 3599166 3599189 -185680365 + AT_rich Low_complexity Low_complexity 1 23 0 226 345 54 40 chr6 3600583 3600731 -185678823 + MIR3 SINE MIR 19 168 -40 391 294 7 7 chr6 3600979 3601132 -185678422 + L1MEc LINE L1 1519 1671 -4725 336 299 56 0 chr6 3601133 3601240 -185678314 + L2 LINE L2 2624 2736 -578 22 0 0 0 chr6 3601287 3601309 -185678245 + AT_rich Low_complexity Low_complexity 1 22 0 1833 247 18 26 chr6 3601309 3601644 -185677910 - L1ME1 LINE L1 -12 6154 5823 2117 115 0 3 chr6 3601644 3601956 -185677598 - AluSq SINE Alu -2 311 1 1833 247 18 26 chr6 3601956 3602110 -185677444 - L1ME1 LINE L1 -343 5823 5669 610 267 10 61 chr6 3602126 3602401 -185677153 + L2 LINE L2 2748 3009 -304 277 306 209 0 chr6 3602481 3602615 -185676939 + MER5A DNA MER1_type 22 183 -6 402 240 20 89 chr6 3602622 3602768 -185676786 + L2 LINE L2 3142 3277 -36 467 270 8 0 chr6 3603862 3603988 -185675566 + MER103 DNA DNA 4 130 -36 735 142 0 108 chr6 3604035 3604183 -185675371 - FLAM_A SINE Alu -1 132 1 2066 120 7 3 chr6 3604512 3604812 -185674742 - AluSx SINE Alu -11 301 1 1712 184 70 6 chr6 3605071 3605414 -185674140 + MLT1A1 LTR MaLR 1 365 0 2706 214 72 89 chr6 3606454 3607119 -185672435 + L1MC5 LINE L1 6578 7211 -750 222 37 0 0 chr6 3607119 3607146 -185672408 + (GA)n Simple_repeat Simple_repeat 1 27 0 2706 214 72 89 chr6 3607146 3607841 -185671713 + L1MC5 LINE L1 7211 7916 -45 292 185 146 54 chr6 3608184 3608314 -185671240 - MIR SINE MIR -55 207 66 252 0 0 0 chr6 3609427 3609455 -185670099 + (GA)n Simple_repeat Simple_repeat 1 28 0 257 278 131 25 chr6 3609550 3609795 -185669759 + HAL1b LINE L1 313 583 -765 300 281 61 0 chr6 3609799 3609913 -185669641 + HAL1b LINE L1 617 737 -611 348 304 147 16 chr6 3610172 3610662 -185668892 + L1 LINE L1 4058 4611 -1535 225 244 58 12 chr6 3610937 3611023 -185668531 + L1 LINE L1 4943 5032 -1114 894 254 123 28 chr6 3611151 3611510 -185668044 - MLT1L LTR MaLR -16 599 207 265 279 196 6 chr6 3611978 3612157 -185667397 + L1ME LINE L1 5577 5789 -332 610 197 213 6 chr6 3612398 3612581 -185666973 - L1ME2 LINE L1 -1 6163 5943 184 321 0 0 chr6 3613003 3613056 -185666498 - L2 LINE L2 -81 3191 3139 2599 58 0 6 chr6 3614697 3615010 -185664544 + AluY SINE Alu 1 311 0 216 258 247 0 chr6 3615017 3615114 -185664440 + MIR SINE MIR 61 181 -81 2208 96 4 0 chr6 3616424 3616705 -185662849 - AluSq SINE Alu -18 295 14 2412 75 7 0 chr6 3618503 3618810 -185660744 + AluY SINE Alu 1 309 -2 203 281 22 52 chr6 3618997 3619132 -185660422 + L2 LINE L2 2967 3097 -216 231 189 0 0 chr6 3619198 3619251 -185660303 + (CA)n Simple_repeat Simple_repeat 2 54 0 239 294 103 46 chr6 3619276 3619470 -185660084 + L2 LINE L2 3095 3299 -14 268 297 89 10 chr6 3620227 3620328 -185659226 + MIR SINE MIR 44 152 -56 1225 75 149 11 chr6 3620328 3620502 -185659052 + AluJo SINE Alu 91 288 -24 191 203 219 0 chr6 3620551 3620615 -185658939 + MIR SINE MIR 89 166 -96 458 186 207 21 chr6 3621327 3621467 -185658087 + MER5A DNA MER1_type 24 189 0 267 180 41 25 chr6 3622931 3623053 -185656501 + GA-rich Low_complexity Low_complexity 2 125 0 242 222 14 14 chr6 3623064 3623136 -185656418 + GA-rich Low_complexity Low_complexity 2 73 0 196 319 9 26 chr6 3623290 3623403 -185656151 + L2 LINE L2 2630 2740 -574 265 150 0 0 chr6 3623409 3623449 -185656105 + Tigger3(Golem) DNA MER2_type 2989 3028 -1 194 304 0 14 chr6 3623676 3623745 -185655809 + MIR SINE MIR 189 256 -6 283 312 85 60 chr6 3624653 3625256 -185654298 + L1ME4a LINE L1 5282 5899 -222 704 254 59 21 chr6 3625256 3625574 -185653980 - HsTC2 DNA Tc2 0 1898 1283 295 223 11 53 chr6 3625585 3625679 -185653875 - HsTC2 DNA Tc2 -1796 102 13 634 192 52 159 chr6 3625737 3626045 -185653509 + MER21B LTR ERV1 23 297 -566 2113 169 60 0 chr6 3626150 3626552 -185653002 - MSTB LTR MaLR 0 426 1 354 98 0 0 chr6 3627230 3627281 -185652273 + (CA)n Simple_repeat Simple_repeat 1 51 0 1083 283 28 12 chr6 3627603 3627925 -185651629 + MLT1G1 LTR MaLR 63 389 -206 2338 112 80 39 chr6 3628176 3628481 -185651073 - MSTA LTR MaLR 0 428 100 2418 59 3 31 chr6 3628481 3628801 -185650753 + AluY SINE Alu 1 311 0 2338 112 80 39 chr6 3628801 3628906 -185650648 - MSTA LTR MaLR -328 100 1 327 25 0 0 chr6 3629646 3629686 -185649868 + (CA)n Simple_repeat Simple_repeat 2 41 0 2174 193 24 39 chr6 3629739 3630274 -185649280 + MER74A LTR ERVL 2 528 -30 264 173 0 0 chr6 3630307 3630359 -185649195 + L2 LINE L2 3259 3310 -3 520 261 30 18 chr6 3630490 3630655 -185648899 + MIR SINE MIR 78 244 -18 243 0 0 0 chr6 3631664 3631691 -185647863 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 408 191 0 0 chr6 3631760 3631844 -185647710 + (TGGA)n Simple_repeat Simple_repeat 2 85 0 260 172 16 78 chr6 3632264 3632328 -185647226 + MLT1J LTR MaLR 3 62 -449 239 113 19 0 chr6 3632328 3632381 -185647173 + A-rich Low_complexity Low_complexity 1 54 0 324 231 33 11 chr6 3632465 3632556 -185646998 + MLT1J LTR MaLR 418 510 -1 247 209 0 0 chr6 3632705 3632748 -185646806 - MARNA DNA Mariner -78 508 466 * 595 311 40 20 chr6 3632742 3632993 -185646561 + MARNA DNA Mariner 131 386 -200 195 129 0 0 chr6 3633753 3633784 -185645770 + (T)n Simple_repeat Simple_repeat 1 31 0 262 355 0 28 chr6 3633786 3633927 -185645627 + L1MD2 LINE L1 202 338 -6202 335 250 11 11 chr6 3634158 3634250 -185645304 + L1MD2 LINE L1 808 899 -5631 1551 154 104 48 chr6 3634522 3634878 -185644676 - L1MC3 LINE L1 -64 7721 7346 3999 190 43 29 chr6 3634883 3635778 -185643776 - L1MB5 LINE L1 -9 6165 5266 1593 224 26 28 chr6 3635769 3636039 -185643515 - L1MA9 LINE L1 -38 6274 6004 * 369 0 0 0 chr6 3636039 3636080 -185643474 + (CA)n Simple_repeat Simple_repeat 2 42 0 1593 224 26 28 chr6 3636080 3636233 -185643321 - L1MA9 LINE L1 -308 6004 5852 * 1632 214 12 3 chr6 3636232 3636578 -185642976 - L1MB5 LINE L1 -867 5279 4931 402 185 0 0 chr6 3636858 3636939 -185642615 + (TCCA)n Simple_repeat Simple_repeat 1 81 0 956 251 3 38 chr6 3637043 3637334 -185642220 - L1MB5 LINE L1 -2427 3719 3439 1368 228 24 19 chr6 3637340 3637833 -185641721 + L1MD2 LINE L1 1020 1515 -5028 635 166 0 93 chr6 3637907 3637934 -185641620 + AluJo SINE Alu 9 37 -275 2384 74 10 7 chr6 3637934 3638233 -185641321 - AluY SINE Alu -11 300 1 635 166 0 93 chr6 3638233 3638344 -185641210 + AluJo SINE Alu 37 134 -178 2323 253 24 28 chr6 3638345 3639271 -185640283 + L1MD2 LINE L1 2401 3275 -3265 * 5238 217 46 33 chr6 3639270 3642051 -185637503 + L1MD2 LINE L1 3237 6753 0 1285 174 0 126 chr6 3642326 3642643 -185636911 + AluJo SINE Alu 30 306 -6 1398 56 0 0 chr6 3642667 3642847 -185636707 + (GAA)n Simple_repeat Simple_repeat 1 180 0 2424 58 0 3 chr6 3644510 3644803 -185634751 - AluY SINE Alu -18 293 2 403 130 26 0 chr6 3644866 3644943 -185634611 + CT-rich Low_complexity Low_complexity 3 81 0 354 168 76 84 chr6 3645045 3645096 -185634458 - MIR SINE MIR -61 147 97 1373 179 100 56 chr6 3645096 3645526 -185634028 - LTR7 LTR ERV1 0 450 2 354 168 76 84 chr6 3645526 3645593 -185633961 - MIR SINE MIR -111 97 30 2242 172 67 26 chr6 3646587 3647047 -185632507 + MLT2B1 LTR ERVL 1 479 -41 207 169 42 0 chr6 3647051 3647122 -185632432 + (TA)n Simple_repeat Simple_repeat 1 74 0 281 132 0 94 chr6 3647125 3647178 -185632376 + MLT2B1 LTR ERVL 350 520 0 1483 192 31 14 chr6 3647256 3647548 -185632006 - AluJo SINE Alu -15 297 1 358 309 63 29 chr6 3648013 3648220 -185631334 + L1M4 LINE L1 2200 2413 -3733 628 254 34 11 chr6 3648815 3648992 -185630562 + MIR SINE MIR 23 203 -59 569 157 52 11 chr6 3649043 3649315 -185630239 + (TAGA)n Simple_repeat Simple_repeat 1 283 0 231 170 0 0 chr6 3649323 3649370 -185630184 + GA-rich Low_complexity Low_complexity 2 48 0 1943 159 60 5 chr6 3649442 3649812 -185629742 + MLT1B LTR MaLR 1 390 0 329 325 44 10 chr6 3650594 3650797 -185628757 + LTR16C LTR ERVL 255 464 -27 306 264 94 6 chr6 3651167 3651326 -185628228 + L1MC4a LINE L1 5723 5895 -1913 2322 93 0 13 chr6 3651970 3652272 -185627282 + AluSx SINE Alu 1 298 -14 27 0 0 0 chr6 3652822 3652849 -185626705 + AT_rich Low_complexity Low_complexity 1 27 0 257 313 30 20 chr6 3653952 3654051 -185625503 - MIR SINE MIR -108 154 55 1693 73 0 0 chr6 3655645 3655864 -185623690 - L1PA8 LINE L1 0 6172 5954 555 280 73 5 chr6 3655919 3656137 -185623417 - MIR SINE MIR 0 262 30 698 277 110 31 chr6 3657623 3658006 -185621548 + LTR16A LTR ERVL 26 438 -12 962 282 51 0 chr6 3658013 3658329 -185621225 - L2 LINE L2 -1105 2209 1878 1832 186 12 129 chr6 3658440 3659027 -185620527 - MLT2B1 LTR ERVL 0 520 3 2180 164 46 0 chr6 3659444 3659817 -185619737 + MLT1B LTR MaLR 1 390 0 2554 170 15 0 chr6 3659818 3660289 -185619265 + MLT1B-int LTR MaLR 2 479 -892 302 148 49 0 chr6 3660289 3660350 -185619204 + MLT1B LTR MaLR 327 390 0 2166 157 10 20 chr6 3660749 3661143 -185618411 + L1MA8 LINE L1 5894 6283 -8 280 370 159 14 chr6 3662139 3662428 -185617126 + L2 LINE L2 2521 2851 -463 579 264 121 100 chr6 3662478 3662803 -185616751 + L2 LINE L2 2886 3222 -50 2254 182 36 77 chr6 3662803 3663336 -185616218 + MLT2B2 LTR ERVL 5 515 0 579 264 121 100 chr6 3663336 3663389 -185616165 + L2 LINE L2 3222 3272 0 230 247 156 0 chr6 3663496 3663573 -185615981 + MIR SINE MIR 108 196 -66 250 231 39 0 chr6 3663862 3663914 -185615640 - L2 LINE L2 -50 3222 3169 605 280 6 34 chr6 3663959 3664134 -185615420 - MIR SINE MIR -59 203 34 1717 167 53 35 chr6 3664433 3664693 -185614861 - MER7A DNA MER2_type -2692 346 79 2229 108 10 0 chr6 3664693 3664988 -185614566 + AluSp SINE Alu 1 298 -15 1717 167 53 35 chr6 3664988 3665068 -185614486 - MER7A DNA MER2_type -2959 79 2 1000 194 0 0 chr6 3665134 3665320 -185614234 + MER58A DNA MER1_type 29 214 -10 209 108 27 0 chr6 3666365 3666421 -185613133 + (TTG)n Simple_repeat Simple_repeat 1 57 0 269 320 20 60 chr6 3666606 3666756 -185612798 - MIR SINE MIR -20 242 99 347 229 24 0 chr6 3666758 3666841 -185612713 - LTR16C LTR ERVL -2 489 405 378 252 107 0 chr6 3667359 3667462 -185612092 + MER91C DNA MER1_type 1 114 -26 345 319 62 35 chr6 3668535 3668792 -185610762 - L2 LINE L2 -182 3090 2827 359 244 99 14 chr6 3669153 3669372 -185610182 - L1ME LINE L1 -727 5437 5197 186 331 87 27 chr6 3669536 3669720 -185609834 + L2 LINE L2 2765 2959 -355 287 222 139 0 chr6 3670280 3670352 -185609202 + MLT1J2 LTR MaLR 315 396 -54 381 221 123 16 chr6 3670482 3670604 -185608950 - L2 LINE L2 0 3272 3138 2162 129 137 11 chr6 3671044 3671424 -185608130 + MSTA LTR MaLR 1 428 0 243 284 11 42 chr6 3671935 3672030 -185607524 + MIR3 SINE MIR 111 202 -6 252 185 0 0 chr6 3672668 3672722 -185606832 + GA-rich Low_complexity Low_complexity 4 57 0 303 301 0 42 chr6 3672730 3672873 -185606681 + HAL1b LINE L1 663 799 -549 1978 193 42 20 chr6 3672876 3673326 -185606228 - MLT1C LTR MaLR 0 467 8 649 232 87 68 chr6 3673331 3673641 -185605913 + HAL1b LINE L1 799 1114 -234 209 309 52 0 chr6 3675035 3675132 -185604422 - MIR3 SINE MIR -21 187 86 352 298 6 28 chr6 3675727 3675908 -185603646 + G-rich Low_complexity Low_complexity 2 178 0 384 260 0 44 chr6 3675933 3676114 -185603440 + G-rich Low_complexity Low_complexity 2 174 0 344 354 0 17 chr6 3676156 3676410 -185603144 + G-rich Low_complexity Low_complexity 1 249 0 280 235 16 53 chr6 3676388 3676632 -185602922 + GA-rich Low_complexity Low_complexity 1 234 0 * 185 293 120 15 chr6 3676777 3676910 -185602644 - L3 LINE CR1 -117 1460 1314 189 0 0 0 chr6 3676977 3676998 -185602556 + (TG)n Simple_repeat Simple_repeat 1 21 0 1781 184 3 0 chr6 3677225 3677508 -185602046 + AluJo SINE Alu 6 289 -23 2149 105 0 11 chr6 3677515 3677800 -185601754 + AluSc SINE Alu 1 282 -27 366 23 0 0 chr6 3677801 3677844 -185601710 + (CATA)n Simple_repeat Simple_repeat 2 44 0 189 333 54 23 chr6 3678523 3678652 -185600902 + L2 LINE L2 3180 3312 -1 21 0 0 0 chr6 3678963 3678984 -185600570 + AT_rich Low_complexity Low_complexity 1 21 0 688 147 0 0 chr6 3678985 3679080 -185600474 + AluJ/FLAM SINE Alu 2 96 -216 205 167 44 44 chr6 3679100 3679190 -185600364 + (TTATA)n Simple_repeat Simple_repeat 2 91 0 383 274 60 8 chr6 3679252 3679369 -185600185 - MIR SINE MIR -1 261 139 437 344 69 12 chr6 3680625 3680872 -185598682 - LTR16A1 LTR ERVL -15 442 182 2406 126 91 2 chr6 3681009 3681405 -185598149 - MSTB1 LTR MaLR 0 432 2 411 73 0 0 chr6 3681628 3681683 -185597871 + (TC)n Simple_repeat Simple_repeat 2 56 0 270 0 0 0 chr6 3681683 3681713 -185597841 + (CA)n Simple_repeat Simple_repeat 1 30 0 351 248 85 31 chr6 3682293 3682422 -185597132 + MIR SINE MIR 120 255 -7 1989 243 47 40 chr6 3682909 3683535 -185596019 - L1MC4 LINE L1 -1 8041 7408 1268 218 45 77 chr6 3683535 3683912 -185595642 - MLT1A1 LTR MaLR 0 365 1 1989 243 47 40 chr6 3683912 3684006 -185595548 - L1MC4 LINE L1 -634 7408 7316 261 304 74 66 chr6 3684022 3684310 -185595244 + L1MC/D LINE L1 4541 4834 -1312 2228 109 10 0 chr6 3684310 3684603 -185594951 + AluSg SINE Alu 1 296 -14 261 304 74 66 chr6 3684603 3684706 -185594848 + L1MC/D LINE L1 4834 4935 -1211 231 264 0 58 chr6 3685194 3685281 -185594273 + LTR33 LTR ERVL 438 519 -2 319 333 51 39 chr6 3685284 3685518 -185594036 + L1MC/D LINE L1 5067 5303 -843 998 281 102 14 chr6 3685533 3685975 -185593579 + L1MC/D LINE L1 5317 5797 -2011 275 314 118 0 chr6 3686037 3686190 -185593364 + MIR SINE MIR 92 262 0 299 259 27 27 chr6 3686430 3686542 -185593012 + CT-rich Low_complexity Low_complexity 2 113 0 366 295 104 23 chr6 3686569 3686742 -185592812 - MIR3 SINE MIR -17 191 5 907 145 36 67 chr6 3687639 3687832 -185591722 + LTR12 LTR ERV1 1 187 -527 1089 110 74 258 chr6 3687834 3688388 -185591166 + LTR12 LTR ERV1 55 506 -208 232 253 137 11 chr6 3688393 3688488 -185591066 + MLT1I LTR MaLR 31 137 -272 302 186 0 17 chr6 3688685 3688744 -185590810 + MLT1I LTR MaLR 310 367 -42 674 250 166 73 chr6 3689377 3690050 -185589504 - HAL1 LINE L1 -124 2383 1648 507 267 47 26 chr6 3690099 3690331 -185589223 - HAL1 LINE L1 -957 1550 1314 393 315 27 0 chr6 3690623 3690734 -185588820 - MIR SINE MIR -71 191 78 195 129 0 0 chr6 3690777 3690808 -185588746 + (TTC)n Simple_repeat Simple_repeat 2 32 0 275 303 56 43 chr6 3690809 3690971 -185588583 + L1M4c LINE L1 1323 1486 -4898 2640 49 0 0 chr6 3691613 3691920 -185587634 + AluY SINE Alu 1 307 -4 1621 135 4 0 chr6 3692440 3692669 -185586885 - MER30 DNA MER1_type 0 230 1 313 255 38 38 chr6 3693040 3693146 -185586408 + MIR SINE MIR 102 207 -55 1617 180 62 36 chr6 3693686 3694022 -185585532 + MER74A LTR ERVL 125 475 -83 2068 122 0 21 chr6 3694022 3694331 -185585223 - AluSp SINE Alu 0 303 1 1617 180 62 36 chr6 3694331 3694377 -185585177 + MER74A LTR ERVL 475 518 -40 288 115 19 19 chr6 3694598 3694650 -185584904 - MLT1A2-int LTR MaLR -1679 56 5 951 198 58 133 chr6 3694650 3695050 -185584504 - MLT1A2 LTR MaLR 0 374 5 2414 86 0 13 chr6 3695258 3695572 -185583982 - AluY SINE Alu -1 310 1 507 121 38 30 chr6 3696382 3696514 -185583040 + GA-rich Low_complexity Low_complexity 4 136 0 650 148 191 37 chr6 3697024 3697134 -185582420 - MER5A DNA MER1_type -2 187 95 1516 180 15 127 chr6 3697134 3697180 -185582374 - MLT1A1 LTR MaLR 0 365 315 2231 113 7 0 chr6 3697180 3697480 -185582074 - AluSp SINE Alu -11 302 1 1516 180 15 127 chr6 3697480 3697844 -185581710 - MLT1A1 LTR MaLR -50 315 1 650 148 191 37 chr6 3697844 3697895 -185581659 - MER5A DNA MER1_type -94 95 1 681 253 78 66 chr6 3697913 3698170 -185581384 + MIR SINE MIR 2 261 -1 513 260 31 0 chr6 3698261 3698388 -185581166 + MIR3 SINE MIR 47 177 -31 297 333 101 0 chr6 3698612 3698741 -185580813 - MIR SINE MIR -70 192 51 2323 114 0 19 chr6 3698932 3699247 -185580307 - AluSg SINE Alu -1 309 1 376 220 53 0 chr6 3699701 3699722 -185579832 + MLT1B LTR MaLR 97 115 -295 1983 148 25 0 chr6 3699722 3700006 -185579548 + AluSx SINE Alu 1 291 -21 376 220 53 0 chr6 3700006 3700091 -185579463 + MLT1B LTR MaLR 115 215 -195 1500 253 107 15 chr6 3700405 3700931 -185578623 + MER90 LTR ERV1 2 575 0 1336 231 86 29 chr6 3701654 3701898 -185577656 - MLT1C LTR MaLR 0 467 238 2071 150 18 48 chr6 3701898 3702218 -185577336 + L1MA5A LINE L1 5904 6211 -86 3162 121 77 16 chr6 3702218 3702715 -185576839 - MER1A DNA MER1_type 0 527 1 2071 150 18 48 chr6 3702715 3702794 -185576760 + L1MA5A LINE L1 6211 6291 -6 1336 231 86 29 chr6 3702794 3702991 -185576563 - MLT1C LTR MaLR -229 238 1 369 183 10 87 chr6 3703068 3703172 -185576382 - MER5A DNA MER1_type -80 109 14 346 191 296 0 chr6 3703289 3703404 -185576150 - MER5B DNA MER1_type 0 178 30 22 35 0 0 chr6 3704016 3704045 -185575509 + AT_rich Low_complexity Low_complexity 1 29 0 2252 116 0 0 chr6 3704047 3704340 -185575214 + AluSx SINE Alu 1 293 -19 204 328 115 33 chr6 3704443 3704565 -185574989 + L2 LINE L2 3104 3235 -37 300 267 22 11 chr6 3704584 3704674 -185574880 + L2 LINE L2 3176 3266 -6 246 264 28 0 chr6 3705571 3705643 -185573911 - L2 LINE L2 -333 2939 2866 244 88 0 0 chr6 3706107 3706141 -185573413 - Alu SINE Alu -16 286 253 3222 144 29 10 chr6 3706232 3706821 -185572733 - L1MB3 LINE L1 -84 6099 5500 387 276 67 8 chr6 3706821 3706955 -185572599 - MER5A DNA MER1_type -37 152 11 2347 102 0 0 chr6 3707371 3707665 -185571889 + AluSx SINE Alu 1 294 -18 255 330 64 0 chr6 3708496 3708590 -185570964 + L2 LINE L2 3180 3279 -34 401 259 106 55 chr6 3709586 3709760 -185569794 - MIR SINE MIR -62 146 20 183 280 80 0 chr6 3710117 3710167 -185569387 + L2 LINE L2 3241 3294 -19 298 363 74 7 chr6 3710201 3710336 -185569218 - L2 LINE L2 -4 3268 3125 479 217 16 50 chr6 3710510 3710658 -185568896 + MER21B LTR ERV1 16 197 -408 * 1195 273 31 41 chr6 3710631 3711019 -185568535 + MER21B LTR ERV1 98 481 -382 850 244 44 44 chr6 3711073 3711347 -185568207 + MER21B LTR ERV1 465 738 -125 315 246 49 0 chr6 3711375 3711497 -185568057 - LTR33A LTR ERVL -127 394 260 1131 182 70 134 chr6 3712063 3712170 -185567384 + MLT1B LTR MaLR 1 113 -277 2169 115 0 3 chr6 3712170 3712475 -185567079 + AluSx SINE Alu 1 304 -8 1131 182 70 134 chr6 3712475 3712784 -185566770 + MLT1B LTR MaLR 113 390 0 675 126 36 0 chr6 3712784 3712895 -185566659 + MLT1A2-int LTR MaLR 1 115 -1256 * 1765 173 8 37 chr6 3712886 3713170 -185566384 + MLT1A2-int LTR MaLR 260 535 -836 1958 95 0 18 chr6 3713170 3713478 -185566076 + AluSg SINE Alu 1 303 0 1765 173 8 37 chr6 3713478 3713544 -185566010 + MLT1A2-int LTR MaLR 535 601 -770 2330 182 25 0 chr6 3713565 3713972 -185565582 + MLT1A2-int LTR MaLR 1319 1735 0 1271 269 16 22 chr6 3713972 3714343 -185565211 + MLT1A2 LTR MaLR 1 369 -5 491 293 103 33 chr6 3714343 3714585 -185564969 - L2 LINE L2 -2507 807 549 1869 143 0 51 chr6 3715295 3715609 -185563945 + MER1B DNA MER1_type 29 326 -13 209 241 316 0 chr6 3715644 3715723 -185563831 - MER5A DNA MER1_type -15 174 71 257 303 55 0 chr6 3715958 3716067 -185563487 + L1MC4a LINE L1 5176 5290 -856 403 316 85 59 chr6 3716067 3716339 -185563215 + L1MC4a LINE L1 5708 5986 -1822 1803 152 27 3 chr6 3716439 3716736 -185562818 + AluJb SINE Alu 1 304 -8 332 212 288 30 chr6 3716943 3717075 -185562479 + MER5A DNA MER1_type 9 174 -15 197 306 32 0 chr6 3717337 3717399 -185562155 + L2 LINE L2 3208 3271 -1 24 32 0 0 chr6 3717533 3717564 -185561990 + AT_rich Low_complexity Low_complexity 1 31 0 2203 101 0 0 chr6 3718023 3718320 -185561234 + AluY SINE Alu 1 297 -14 2169 105 7 0 chr6 3718493 3718799 -185560755 - AluSq SINE Alu -5 308 1 2076 89 4 0 chr6 3719148 3719482 -185560072 + AluY SINE Alu 1 335 0 342 0 0 0 chr6 3719692 3719730 -185559824 + (TG)n Simple_repeat Simple_repeat 2 39 0 352 287 38 96 chr6 3720485 3720566 -185558988 + MIR3 SINE MIR 4 88 -120 2217 108 7 0 chr6 3720566 3720872 -185558682 - AluSp SINE Alu -5 308 1 352 287 38 96 chr6 3720872 3720999 -185558555 + MIR3 SINE MIR 88 200 -8 2366 87 0 0 chr6 3721660 3721972 -185557582 + AluSx SINE Alu 1 312 0 609 279 96 21 chr6 3722350 3722630 -185556924 + MARNA DNA Mariner 175 475 -111 310 254 62 102 chr6 3723517 3723650 -185555904 + MIR SINE MIR 1 124 -138 1065 193 88 99 chr6 3723650 3724105 -185555449 - LTR7 LTR ERV1 0 450 1 310 254 62 102 chr6 3724105 3724186 -185555368 + MIR SINE MIR 124 207 -55 492 279 0 64 chr6 3724783 3724955 -185554599 - MIR SINE MIR -65 197 37 2168 96 3 0 chr6 3725156 3725449 -185554105 - AluSp SINE Alu -18 295 2 328 262 10 19 chr6 3725724 3725827 -185553727 + MLT1K LTR MaLR 479 580 -8 1957 239 79 5 chr6 3726156 3726700 -185552854 + L1ME2 LINE L1 5588 6172 -6 2142 97 3 0 chr6 3726757 3727045 -185552509 + AluSp SINE Alu 2 290 -23 186 43 0 0 chr6 3727051 3727074 -185552480 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 252 264 153 0 chr6 3727289 3727361 -185552193 - L2 LINE L2 -1 3312 3230 1921 86 30 50 chr6 3727902 3728205 -185551349 + AluSp SINE Alu 1 297 -16 2123 105 3 0 chr6 3728297 3728591 -185550963 + AluSp SINE Alu 3 297 -16 1901 155 8 137 chr6 3728634 3728958 -185550596 - MSTB LTR MaLR 0 426 184 2390 57 0 0 chr6 3728958 3729257 -185550297 - AluY SINE Alu -12 299 1 1901 155 8 137 chr6 3729257 3729421 -185550133 - MSTB LTR MaLR -242 184 1 4063 136 120 104 chr6 3729470 3730059 -185549495 - L1MC3 LINE L1 0 7785 7095 245 273 39 0 chr6 3730059 3730136 -185549418 - MLT1F1 LTR MaLR -453 114 35 4063 136 120 104 chr6 3730136 3730554 -185549000 - L1MC3 LINE L1 -690 7095 6685 270 0 0 0 chr6 3731313 3731343 -185548211 + (TG)n Simple_repeat Simple_repeat 2 31 0 2136 82 21 7 chr6 3731352 3731643 -185547911 - AluSc SINE Alu -14 295 1 287 307 128 44 chr6 3732642 3732893 -185546661 - MER102b DNA MER1_type -3 338 67 556 234 101 32 chr6 3733168 3733356 -185546198 - L2 LINE L2 0 3313 3113 303 241 13 13 chr6 3734326 3734405 -185545149 - MIR SINE MIR 0 262 184 22 0 0 0 chr6 3735798 3735820 -185543734 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 3735919 3735953 -185543601 + (GGA)n Simple_repeat Simple_repeat 1 34 0 26 0 0 0 chr6 3736117 3736143 -185543411 + GC_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr6 3736264 3736305 -185543249 + GC_rich Low_complexity Low_complexity 1 41 0 325 297 44 100 chr6 3836963 3837481 -185442073 + L2 LINE L2 2390 2878 -436 26 0 0 0 chr6 3838501 3838527 -185441027 + AT_rich Low_complexity Low_complexity 1 26 0 2613 201 64 47 chr6 3838927 3839002 -185440552 - MER82 DNA MER2_type -1 652 580 1801 123 0 87 chr6 3839002 3839342 -185440212 - AluSx SINE Alu 0 313 1 2613 201 64 47 chr6 3839342 3839906 -185439648 - MER82 DNA MER2_type -73 580 1 954 273 67 4 chr6 3839916 3840169 -185439385 - LTR16C LTR ERVL 0 491 223 2139 121 3 7 chr6 3840181 3840487 -185439067 - AluY SINE Alu -6 305 1 536 213 89 30 chr6 3840488 3840657 -185438897 - L1ME LINE L1 -3292 2788 2610 3072 229 71 70 chr6 3840672 3841256 -185438298 - L1ME LINE L1 -3549 2531 1949 207 0 0 0 chr6 3841256 3841279 -185438275 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3072 229 71 70 chr6 3841279 3841296 -185438258 - L1ME LINE L1 -4131 1949 1934 2247 114 114 75 chr6 3841296 3841338 -185438216 - MSTA LTR MaLR 0 428 389 1566 154 24 8 chr6 3841338 3841591 -185437963 + AluJb SINE Alu 23 279 -33 221 0 0 33 chr6 3841591 3841621 -185437933 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 2247 114 114 75 chr6 3841621 3841989 -185437565 - MSTA LTR MaLR -38 390 1 3072 229 71 70 chr6 3841989 3843180 -185436374 - L1ME LINE L1 -4146 1934 742 2402 150 23 30 chr6 3843817 3844250 -185435304 - MSTB1 LTR MaLR 0 432 3 524 323 31 16 chr6 3844755 3844947 -185434607 - L2 LINE L2 -1 3312 3118 184 341 181 4 chr6 3844948 3845037 -185434517 - L2 LINE L2 -495 2819 2747 2496 205 58 5 chr6 3845037 3845485 -185434069 - MER70A LTR ERVL 0 472 1 184 341 181 4 chr6 3845485 3845621 -185433933 - L2 LINE L2 -567 2747 2554 234 281 114 24 chr6 3845806 3846016 -185433538 - L1M4 LINE L1 -2106 4040 3812 * 2525 166 53 0 chr6 3846001 3846177 -185433377 - L1MB3 LINE L1 -210 5973 5808 249 83 0 0 chr6 3846177 3846213 -185433341 + (TA)n Simple_repeat Simple_repeat 1 36 0 2525 166 53 0 chr6 3846213 3846487 -185433067 - L1MB3 LINE L1 -375 5808 5499 2189 116 0 0 chr6 3846493 3846794 -185432760 - AluY SINE Alu -9 302 2 3314 98 7 7 chr6 3846820 3847270 -185432284 - L1MA2 LINE L1 0 6304 5855 10792 175 52 14 chr6 3847270 3849458 -185430096 - L1MB3 LINE L1 -1282 4864 2593 1270 116 0 0 chr6 3849460 3849632 -185429922 - AluSq SINE Alu 0 313 142 233 171 0 0 chr6 3849764 3849805 -185429749 - HAL1 LINE L1 -109 2398 2358 3689 226 122 44 chr6 3849927 3851494 -185428060 - L1MDb LINE L1 -3979 2427 783 279 0 0 0 chr6 3851695 3851726 -185427828 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 222 128 0 0 chr6 3851872 3851911 -185427643 + (GA)n Simple_repeat Simple_repeat 1 39 0 375 302 17 26 chr6 3852773 3852889 -185426665 - MIR3 SINE MIR -9 199 85 356 250 190 9 chr6 3853419 3853535 -185426019 - L2 LINE L2 -2 3270 3134 273 252 39 87 chr6 3853785 3853888 -185425666 - L3 LINE CR1 -12 1565 1468 221 302 94 0 chr6 3854953 3855049 -185424505 + L2 LINE L2 3161 3265 -7 1890 191 26 63 chr6 3855416 3855846 -185423708 - MLT2D LTR ERVL 0 414 1 243 290 250 0 chr6 3856612 3856712 -185422842 + L2 LINE L2 3148 3272 0 2363 65 0 3 chr6 3856817 3857108 -185422446 + AluY SINE Alu 3 292 -19 217 339 45 18 chr6 3857170 3857282 -185422272 + L2 LINE L2 2643 2757 -557 2192 132 134 11 chr6 3858404 3858784 -185420770 + MSTA LTR MaLR 1 427 -1 314 333 117 26 chr6 3858848 3859112 -185420442 - L2 LINE L2 -9 3263 2976 1783 154 57 0 chr6 3859629 3859908 -185419646 - AluSg SINE Alu -14 296 2 1155 214 81 45 chr6 3860505 3860837 -185418717 + MER2 DNA MER2_type 1 344 0 939 210 16 0 chr6 3864066 3864252 -185415302 + MER2 DNA MER2_type 2 190 -155 2097 132 3 0 chr6 3864255 3864558 -185414996 - AluSq SINE Alu -9 304 1 324 224 0 15 chr6 3864582 3864649 -185414905 + MER2 DNA MER2_type 267 332 -13 1247 178 18 4 chr6 3864808 3865139 -185414415 - MER74A LTR ERVL -124 434 19 2095 85 0 0 chr6 3865139 3865398 -185414156 + AluSc SINE Alu 1 259 -50 191 61 30 0 chr6 3865408 3865441 -185414113 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 259 86 0 0 chr6 3865446 3865481 -185414073 - MER74C LTR ERVL -424 36 2 2552 241 58 24 chr6 3865484 3865692 -185413862 - L1ME3A LINE L1 -21 6149 5950 2006 146 7 0 chr6 3865692 3865994 -185413560 - AluSx SINE Alu -8 304 1 2552 241 58 24 chr6 3865994 3867209 -185412345 - L1ME3A LINE L1 -220 5950 4667 1257 215 15 4 chr6 3868330 3868616 -185410938 + AluJb SINE Alu 16 304 0 228 208 26 26 chr6 3868798 3868875 -185410679 - MER117 DNA MER1_type -5 192 116 326 277 28 35 chr6 3868945 3869086 -185410468 + MIR SINE MIR 8 147 -115 2077 210 33 9 chr6 3869086 3869539 -185410015 + MER101 LTR ERV1 11 474 0 2352 98 0 0 chr6 3869701 3869998 -185409556 - AluSq SINE Alu -10 303 7 207 0 0 0 chr6 3871208 3871231 -185408323 + (T)n Simple_repeat Simple_repeat 1 23 0 379 169 0 28 chr6 3871894 3871965 -185407589 + MER89-int LTR ERV1 2577 2645 -3686 1745 182 41 64 chr6 3872048 3872635 -185406919 + MER89-int LTR ERV1 1066 3012 -3319 705 213 70 39 chr6 3872559 3872789 -185406765 + LTR57-int LTR ERVL 1236 1472 -3871 * 2304 89 3 0 chr6 3872789 3873082 -185406472 + AluSg SINE Alu 1 294 -16 2402 97 0 0 chr6 3873223 3873531 -185406023 + AluSx SINE Alu 1 308 -4 883 169 15 36 chr6 3873581 3873776 -185405778 + MER89-int LTR ERV1 3540 3730 -2868 723 142 172 64 chr6 3873855 3874059 -185405495 + MER89-int LTR ERV1 3730 3955 -2643 865 114 57 0 chr6 3874060 3874183 -185405371 + FRAM SINE Alu 32 161 -15 2265 108 0 37 chr6 3874185 3874510 -185405044 + AluSq SINE Alu 1 313 0 2307 175 38 69 chr6 3874554 3875159 -185404395 + MER89-int LTR ERV1 4024 4609 -1722 265 277 15 46 chr6 3875145 3875275 -185404279 + MER89-int LTR ERV1 2727 2852 -1795 * 270 247 67 67 chr6 3876675 3876764 -185402790 + MER89-int LTR ERV1 6305 6393 -408 2414 150 32 47 chr6 3877331 3877804 -185401750 + MER101 LTR ERV1 9 474 0 1700 197 61 72 chr6 3878174 3878424 -185401130 + MLT1C LTR MaLR 1 245 -222 891 128 0 0 chr6 3878424 3878588 -185400966 + (GA)n Simple_repeat Simple_repeat 2 165 0 1700 197 61 72 chr6 3878588 3878809 -185400745 + MLT1C LTR MaLR 245 467 0 933 187 12 88 chr6 3879014 3879265 -185400289 - MER101 LTR ERV1 -111 363 132 370 184 167 18 chr6 3879688 3879802 -185399752 - L1ME4a LINE L1 -27 6374 6244 1459 265 121 24 chr6 3879830 3880542 -185399012 - HAL1 LINE L1 0 2507 1727 1364 258 94 28 chr6 3880539 3881281 -185398273 - L1ME4a LINE L1 -452 5998 5205 * 423 246 42 122 chr6 3881369 3881755 -185397799 - L1ME4a LINE L1 -3463 2963 2609 1570 173 43 34 chr6 3882135 3882458 -185397096 + MLT1B LTR MaLR 1 326 -64 581 98 0 80 chr6 3882457 3882569 -185396985 + Tigger4(Zombi) DNA MER2_type 2629 2731 0 * 300 262 94 67 chr6 3882900 3883265 -185396289 - L1MDa LINE L1 -4813 1613 1232 264 285 102 0 chr6 3883259 3883396 -185396158 - L1MDa LINE L1 -5069 1347 1197 * 243 211 53 123 chr6 3883510 3883624 -185395930 - MLT1H LTR MaLR -13 536 431 5121 83 25 3 chr6 3883743 3884419 -185395135 - LTR8 LTR ERV1 0 691 1 313 258 78 31 chr6 3884443 3884571 -185394983 - MLT1H LTR MaLR -365 184 51 25 0 0 0 chr6 3884620 3884645 -185394909 + AT_rich Low_complexity Low_complexity 1 25 0 873 237 118 0 chr6 3884787 3885015 -185394539 - MLT1E1 LTR MaLR -2 652 398 547 265 33 17 chr6 3885343 3885524 -185394030 - MIR SINE MIR 0 262 79 884 166 61 55 chr6 3885526 3885707 -185393847 + LTR54 LTR ERV1 2 183 -327 813 230 19 5 chr6 3885730 3885939 -185393615 + LTR54 LTR ERV1 299 510 0 2109 100 19 59 chr6 3886637 3886957 -185392597 - AluSx SINE Alu -5 307 1 184 308 39 51 chr6 3886973 3887129 -185392425 + MIR SINE MIR 1 154 -108 27 81 0 0 chr6 3887169 3887231 -185392323 + AT_rich Low_complexity Low_complexity 1 62 0 4147 109 148 110 chr6 3888848 3890213 -185389341 - pTR5 LTR ERV1 0 2438 742 231 173 77 0 chr6 3891835 3891887 -185387667 - L1 LINE L1 -3715 2431 2376 8012 14 0 0 chr6 3891893 3892961 -185386593 - L1PA2 LINE L1 -4 6151 5084 1859 175 34 0 chr6 3893247 3893544 -185386010 + AluSx SINE Alu 1 307 -5 1467 143 3 73 chr6 3893544 3893830 -185385724 - MER2 DNA MER2_type -79 266 1 8389 109 41 6 chr6 3894204 3895460 -185384094 + HSMAR2 DNA Mariner 2 1301 -1 22 0 0 0 chr6 3895585 3895607 -185383947 + AT_rich Low_complexity Low_complexity 1 22 0 258 274 73 32 chr6 3895652 3895776 -185383778 - L1MC/D LINE L1 -2159 5883 5755 680 272 68 33 chr6 3895891 3896351 -185383203 - L1MC/D LINE L1 -448 5722 5255 598 120 16 72 chr6 3896434 3896488 -185383066 - L1MB2 LINE L1 -5 6166 6111 1913 84 4 4 chr6 3896488 3896763 -185382791 - L1MA2 LINE L1 0 6304 6030 598 120 16 72 chr6 3896763 3896833 -185382721 - L1MB2 LINE L1 -60 6111 6049 44844 38 4 1 chr6 3896881 3903002 -185376552 - L1PA4 LINE L1 0 6155 13 594 256 42 30 chr6 3903005 3903267 -185376287 - L1MC/D LINE L1 -999 5147 4883 663 299 119 3 chr6 3903340 3903634 -185375920 + LTR16C LTR ERVL 71 398 -93 1633 189 4 0 chr6 3903704 3903968 -185375586 - AluJo SINE Alu -47 265 1 614 164 8 0 chr6 3905456 3905578 -185373976 + CT-rich Low_complexity Low_complexity 4 126 0 1560 170 56 35 chr6 3905665 3905953 -185373601 - AluJo SINE Alu -18 294 1 198 265 20 0 chr6 3906943 3906992 -185372562 + L2 LINE L2 3247 3296 -17 1848 175 153 0 chr6 3907608 3908008 -185371546 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 3908030 3908052 -185371502 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 3908175 3908231 -185371323 + AT_rich Low_complexity Low_complexity 1 56 0 1124 132 113 33 chr6 3910099 3910312 -185369242 + AluJo SINE Alu 1 230 -82 1570 74 0 11 chr6 3910312 3910501 -185369053 - AluSp SINE Alu -126 187 1 2178 114 3 3 chr6 3910501 3910800 -185368754 - AluSx SINE Alu -13 299 1 850 265 175 10 chr6 3910833 3911343 -185368211 - L2 LINE L2 -16 3297 2709 722 178 144 29 chr6 3911470 3911678 -185367876 - MIR SINE MIR -11 251 20 834 238 102 0 chr6 3911823 3912029 -185367525 - MIR SINE MIR -33 229 3 1612 179 9 57 chr6 3912385 3912703 -185366851 - AluJo SINE Alu -9 303 1 224 327 0 0 chr6 3912830 3912885 -185366669 + L2 LINE L2 353 407 -2907 1099 129 6 18 chr6 3913210 3913381 -185366173 - FRAM SINE Alu -8 168 1 1735 170 13 42 chr6 3913537 3913848 -185365706 - AluJb SINE Alu -8 304 3 2284 115 0 6 chr6 3914127 3914440 -185365114 - AluSx SINE Alu -1 311 1 286 211 53 0 chr6 3914944 3915020 -185364534 + MER116 DNA Mariner 1 80 0 204 40 0 0 chr6 3915187 3915212 -185364342 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 203 259 9 60 chr6 3915844 3915960 -185363594 + A-rich Low_complexity Low_complexity 5 114 0 483 276 115 36 chr6 3918438 3918742 -185360812 - L1MC4a LINE L1 -1971 5837 5510 2230 77 4 0 chr6 3918880 3919199 -185360355 - AluSg SINE Alu 0 329 10 180 111 0 0 chr6 3919269 3919296 -185360258 + (TA)n Simple_repeat Simple_repeat 2 28 0 2059 79 0 95 chr6 3919305 3919644 -185359910 - AluSx SINE Alu 0 309 1 1962 119 14 4 chr6 3919891 3920169 -185359385 + AluSp SINE Alu 9 289 -24 1774 184 0 0 chr6 3920437 3920719 -185358835 - AluJb SINE Alu -30 282 1 665 240 60 0 chr6 3920723 3920873 -185358681 - AluJb SINE Alu -17 295 137 1850 141 24 10 chr6 3920907 3921205 -185358349 + AluJb SINE Alu 3 304 -8 261 0 0 0 chr6 3922480 3922509 -185357045 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1392 125 35 39 chr6 3922514 3922746 -185356808 - AluSx SINE Alu -37 275 45 351 247 118 12 chr6 3922999 3923169 -185356385 - HAL1 LINE L1 -1088 1419 1232 513 289 179 37 chr6 3923183 3923859 -185355695 - HAL1 LINE L1 -1477 1030 259 228 86 0 0 chr6 3924020 3924055 -185355499 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 1650 144 87 11 chr6 3924100 3924377 -185355177 - AluJb SINE Alu -14 298 1 358 224 187 0 chr6 3924456 3924590 -185354964 - L1ME2 LINE L1 -16 6148 5990 558 155 68 0 chr6 3924821 3924924 -185354630 - L1MC1 LINE L1 -5 6328 6219 1091 145 59 5 chr6 3925585 3925771 -185353783 + AluJb SINE Alu 108 303 -9 444 182 261 51 chr6 3925830 3926006 -185353548 + MER20 DNA MER1_type 7 219 0 344 234 26 0 chr6 3926346 3926423 -185353131 - MIR SINE MIR -61 147 69 1130 192 88 22 chr6 3927552 3927869 -185351685 - MER46C DNA MER2_type 0 338 1 850 174 0 153 chr6 3928574 3928907 -185350647 - L1MC5 LINE L1 -861 7100 6820 666 249 95 86 chr6 3928907 3929043 -185350511 - MER58B DNA MER1_type -2079 341 208 2369 58 10 7 chr6 3929043 3929356 -185350198 - AluY SINE Alu 0 314 1 666 249 95 86 chr6 3929356 3929556 -185349998 - MER58B DNA MER1_type -2212 208 1 850 174 0 153 chr6 3929556 3929849 -185349705 - L1MC5 LINE L1 -1141 6820 6476 1007 247 71 30 chr6 3930217 3930683 -185348871 - L1MC5 LINE L1 -2029 5779 5295 2162 114 3 0 chr6 3930858 3931155 -185348399 - AluSx SINE Alu -14 298 1 278 213 115 41 chr6 3931502 3931624 -185347930 + L1MC4 LINE L1 7906 8036 -6 405 0 0 0 chr6 3932099 3932144 -185347410 + (CA)n Simple_repeat Simple_repeat 2 46 0 2565 46 0 3 chr6 3932294 3932598 -185346956 + AluY SINE Alu 1 303 -8 1120 162 8 83 chr6 3932749 3932990 -185346564 - AluJo SINE Alu -5 307 85 2785 13 0 0 chr6 3934216 3934523 -185345031 - AluYa5 SINE Alu -4 307 1 2084 102 0 33 chr6 3935083 3935407 -185344147 - AluSx SINE Alu 0 312 1 2076 103 0 17 chr6 3935485 3935814 -185343740 - AluSq SINE Alu 0 313 1 454 174 22 22 chr6 3936450 3936569 -185342985 - AluSg/x SINE Alu 0 305 187 561 188 210 6 chr6 3937534 3937710 -185341844 - L1PA7 LINE L1 -1 6153 5942 1399 176 70 40 chr6 3938087 3938399 -185341155 - AluJo SINE Alu 0 320 1 2080 105 4 0 chr6 3938713 3938989 -185340565 - AluSc SINE Alu -20 289 13 23 33 0 0 chr6 3940448 3940478 -185339076 + AT_rich Low_complexity Low_complexity 1 30 0 1202 86 37 0 chr6 3941949 3942111 -185337443 - AluY SINE Alu -9 302 135 1134 165 36 45 chr6 3942208 3942432 -185337122 - AluJo SINE Alu -9 303 82 23 0 0 0 chr6 3943201 3943224 -185336330 + AT_rich Low_complexity Low_complexity 1 23 0 244 303 86 40 chr6 3943272 3943447 -185336107 + L2 LINE L2 2652 2834 -480 2075 122 3 23 chr6 3943838 3944142 -185335412 - AluSx SINE Alu -14 298 1 816 191 83 5 chr6 3944285 3944489 -185335065 - MER7A DNA MER2_type -117 229 12 21 0 0 0 chr6 3946706 3946727 -185332827 + AT_rich Low_complexity Low_complexity 1 21 0 852 168 48 12 chr6 3949811 3949978 -185329576 - AluSc SINE Alu -2 307 135 607 256 130 27 chr6 3950551 3950774 -185328780 - MIR SINE MIR -13 249 4 2217 96 31 0 chr6 3951419 3951710 -185327844 - AluSg1 SINE Alu -9 300 1 23 33 0 0 chr6 3951761 3951791 -185327763 + AT_rich Low_complexity Low_complexity 1 30 0 305 359 71 12 chr6 3951889 3952059 -185327495 + MER5A DNA MER1_type 8 187 -2 22 0 0 0 chr6 3954119 3954141 -185325413 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr6 3954300 3954332 -185325222 + AT_rich Low_complexity Low_complexity 1 32 0 1664 201 30 0 chr6 3954920 3955223 -185324331 + AluJb SINE Alu 1 312 0 415 297 133 0 chr6 3955620 3955785 -185323769 - MIR SINE MIR -74 188 2 303 261 0 15 chr6 3956169 3956234 -185323320 + MER5A DNA MER1_type 123 186 -3 2144 114 10 0 chr6 3956258 3956556 -185322998 + AluSq SINE Alu 1 301 -12 711 58 58 33 chr6 3956556 3956676 -185322878 + L1PA8 LINE L1 6050 6172 0 2279 98 3 0 chr6 3956678 3956973 -185322581 + AluSp SINE Alu 1 296 -17 714 235 27 27 chr6 3956999 3957182 -185322372 + MIR SINE MIR 53 235 -27 27 0 0 0 chr6 3957580 3957607 -185321947 + AT_rich Low_complexity Low_complexity 1 27 0 1964 133 3 20 chr6 3958049 3958349 -185321205 - AluSx SINE Alu -17 295 1 2140 108 0 40 chr6 3959247 3959570 -185319984 + AluSx SINE Alu 1 310 -2 441 292 81 49 chr6 3959953 3960138 -185319416 + L3b LINE CR1 1303 1493 -90 234 81 0 27 chr6 3960154 3960191 -185319363 + MER5B DNA MER1_type 20 55 -123 2262 109 0 6 chr6 3960242 3960553 -185319001 + AluSx SINE Alu 1 309 -3 181 194 0 0 chr6 3960553 3960584 -185318970 + MER5A DNA MER1_type 111 141 -48 329 222 25 0 chr6 3960586 3960667 -185318887 + U13 snRNA snRNA 1 83 -21 2045 108 37 17 chr6 3960794 3961090 -185318464 + AluSx SINE Alu 1 302 -10 2611 63 0 0 chr6 3962247 3962549 -185317005 - AluSg SINE Alu -8 302 1 27 100 0 0 chr6 3963411 3963501 -185316053 + GC_rich Low_complexity Low_complexity 1 90 0 21 36 0 0 chr6 3963534 3963562 -185315992 + GC_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr6 3964229 3964261 -185315293 + AT_rich Low_complexity Low_complexity 1 32 0 566 218 91 63 chr6 3964430 3964682 -185314872 + L2 LINE L2 3032 3290 -23 332 263 26 26 chr6 3965370 3965484 -185314070 - MIR SINE MIR -13 249 136 2154 104 3 35 chr6 3965491 3965809 -185313745 - AluSx SINE Alu -4 308 1 3730 103 68 6 chr6 3966504 3967050 -185312504 + MER39B LTR ERV1 1 580 -73 510 233 10 0 chr6 3967050 3967153 -185312401 - AluSc SINE Alu -93 216 113 2112 142 0 7 chr6 3967737 3968047 -185311507 - AluSx SINE Alu 0 312 5 207 108 27 0 chr6 3969509 3969546 -185310008 + (TA)n Simple_repeat Simple_repeat 2 39 0 247 182 45 15 chr6 3970005 3970025 -185309529 + GA-rich Low_complexity Low_complexity 2 20 -49 1713 156 48 17 chr6 3970025 3970314 -185309240 + AluJo SINE Alu 1 298 -14 247 182 45 15 chr6 3970314 3970359 -185309195 + GA-rich Low_complexity Low_complexity 20 69 0 2382 98 3 0 chr6 3970362 3970669 -185308885 + AluSp SINE Alu 1 308 -5 1232 175 16 70 chr6 3972043 3972357 -185307197 - AluJo SINE Alu -15 297 1 2439 67 3 3 chr6 3972515 3972815 -185306739 - AluY SINE Alu -11 300 1 2105 112 34 3 chr6 3973272 3973566 -185305988 + AluSx SINE Alu 1 303 -9 1111 138 56 81 chr6 3973663 3973708 -185305846 - MLT1A1 LTR MaLR 0 365 320 2338 97 10 0 chr6 3973708 3974008 -185305546 + AluSq SINE Alu 1 303 -10 1111 138 56 81 chr6 3974008 3974205 -185305349 - MLT1A1 LTR MaLR -45 320 173 6129 117 208 86 chr6 3974206 3975675 -185303879 + pTR5 LTR ERV1 791 2438 0 593 183 32 40 chr6 3975714 3975840 -185303714 - MLT1A1 LTR MaLR -240 125 1 279 85 85 43 chr6 3975957 3976004 -185303550 - MER8 DNA MER2_type 0 239 191 254 250 24 97 chr6 3976009 3976133 -185303421 + LTR4 LTR ERV1 5 119 -477 767 232 28 46 chr6 3976370 3976654 -185302900 + LTR4 LTR ERV1 318 596 0 4077 131 29 50 chr6 3976654 3976775 -185302779 + Tigger2 DNA MER2_type 47 169 -2549 1949 126 7 0 chr6 3976775 3977045 -185302509 + AluSx SINE Alu 5 276 -36 4077 131 29 50 chr6 3977045 3977248 -185302306 + Tigger2 DNA MER2_type 169 375 -2343 2141 124 3 0 chr6 3977248 3977546 -185302008 + AluSq SINE Alu 1 299 -14 4077 131 29 50 chr6 3977546 3977943 -185301611 + Tigger2 DNA MER2_type 375 754 -1964 919 142 77 27 chr6 3977995 3978020 -185301534 + Tigger2 DNA MER2_type 2461 2483 -235 2082 131 7 0 chr6 3978020 3978318 -185301236 - AluSx SINE Alu -12 300 1 919 142 77 27 chr6 3978318 3978475 -185301079 + Tigger2 DNA MER2_type 2483 2652 -66 601 119 30 50 chr6 3978523 3978602 -185300952 + FLAM_A SINE Alu 29 107 -204 2172 106 13 7 chr6 3978602 3978903 -185300651 - AluSc SINE Alu -6 303 1 601 119 30 50 chr6 3978903 3978924 -185300630 + FLAM_A SINE Alu 107 127 -184 361 221 15 0 chr6 3978925 3978993 -185300561 + Tigger2 DNA MER2_type 2640 2708 -10 2200 99 3 0 chr6 3979006 3979329 -185300225 - AluSx SINE Alu 0 324 1 1670 193 74 37 chr6 3979541 3979971 -185299583 + MLT1C LTR MaLR 18 463 -4 480 281 72 27 chr6 3980255 3980615 -185298939 + L1ME4a LINE L1 5600 5984 -137 26 0 0 0 chr6 3981501 3981527 -185298027 + AT_rich Low_complexity Low_complexity 1 26 0 1458 138 9 9 chr6 3981531 3981755 -185297799 + AluJo SINE Alu 36 259 -53 2402 51 27 0 chr6 3982375 3982667 -185296887 - AluY SINE Alu -11 300 1 2335 84 0 0 chr6 3982798 3983083 -185296471 - AluY SINE Alu -26 285 1 315 272 234 0 chr6 3983819 3984003 -185295551 - L2 LINE L2 -549 2765 2539 2255 112 3 13 chr6 3984107 3984421 -185295133 - AluSx SINE Alu -1 311 1 1866 151 130 16 chr6 3984881 3985265 -185294289 + MSTA LTR MaLR 1 428 0 185 302 0 38 chr6 3985457 3985510 -185294044 + L2 LINE L2 3163 3213 -59 477 252 25 0 chr6 3985614 3985733 -185293821 - MLT1H LTR MaLR -425 124 3 2494 143 16 9 chr6 3985982 3986407 -185293147 + L1MA3 LINE L1 5600 6027 -278 2503 127 8 3 chr6 3986409 3986795 -185292759 + L1MA5 LINE L1 5903 6290 -10 2413 97 0 0 chr6 3987768 3988079 -185291475 - AluSq SINE Alu -2 311 1 345 127 0 0 chr6 3988086 3988141 -185291413 - Alu SINE Alu -1 300 246 3641 211 98 54 chr6 3988537 3988849 -185290705 - L1M4 LINE L1 -806 5340 5043 2446 78 0 0 chr6 3988849 3989144 -185290410 + AluY SINE Alu 1 295 -16 3641 211 98 54 chr6 3989144 3989295 -185290259 - L1M4 LINE L1 -1103 5043 4900 2281 115 7 0 chr6 3989295 3989590 -185289964 - AluSx SINE Alu -15 297 1 3641 211 98 54 chr6 3989590 3990030 -185289524 - L1M4 LINE L1 -1246 4900 4481 2958 170 129 21 chr6 3990030 3990736 -185288818 - LTR48 LTR ERV1 -3 784 3 3641 211 98 54 chr6 3990736 3990890 -185288664 - L1M4 LINE L1 -1665 4481 4335 2838 161 39 17 chr6 3990890 3991430 -185288124 - L1MB1 LINE L1 -1 6167 5616 3641 211 98 54 chr6 3991430 3991802 -185287752 - L1M4 LINE L1 -1811 4335 3846 2630 127 83 22 chr6 3991812 3992317 -185287237 - L1MB4 LINE L1 -3 6177 5642 306 137 78 0 chr6 3992319 3992370 -185287184 + MSTD LTR MaLR 1 55 -373 1497 184 92 30 chr6 3994216 3994552 -185285002 + MSTD LTR MaLR 40 396 0 255 87 0 87 chr6 3994552 3994598 -185284956 - L1MB4 LINE L1 -539 5644 5603 * 5453 219 97 19 chr6 3994586 3997176 -185282378 - L1M4 LINE L1 -1462 4920 924 2013 142 3 7 chr6 3997176 3997479 -185282075 - AluSx SINE Alu -10 302 1 5453 219 97 19 chr6 3997479 3997662 -185281892 - L1M4 LINE L1 -5458 924 757 347 303 67 26 chr6 3998293 3998533 -185281021 - L1MDb LINE L1 -5484 586 323 287 68 45 0 chr6 3998664 3998708 -185280846 + MADE1 DNA Mariner 1 46 -34 337 331 33 11 chr6 3998759 3998943 -185280611 - L1MDb LINE L1 -5882 188 1 273 311 34 17 chr6 3998943 3999062 -185280492 + MIR SINE MIR 47 167 -95 2253 103 10 0 chr6 4000268 4000560 -185278994 + AluSx SINE Alu 1 295 -17 2162 114 0 10 chr6 4000642 4000941 -185278613 - AluSx SINE Alu -16 296 1 286 256 22 11 chr6 4001017 4001107 -185278447 - MER5A DNA MER1_type -89 100 10 2208 116 0 3 chr6 4002235 4002529 -185277025 - AluSx SINE Alu -19 293 1 2133 123 0 7 chr6 4003517 4003818 -185275736 - AluSx SINE Alu -13 299 1 25 0 0 0 chr6 4003866 4003891 -185275663 + AT_rich Low_complexity Low_complexity 1 25 0 2380 210 50 114 chr6 4003930 4004367 -185275187 - L1ME2 LINE L1 -49 6115 5651 376 100 0 57 chr6 4004367 4004392 -185275162 + L1MA9 LINE L1 6247 6272 -40 1829 186 20 12 chr6 4004392 4004642 -185274912 - MER7A DNA MER2_type -2693 345 92 2127 108 38 0 chr6 4004642 4004929 -185274625 + AluSx SINE Alu 1 298 -14 1829 186 20 12 chr6 4004929 4005022 -185274532 - MER7A DNA MER2_type -2946 92 1 376 100 0 57 chr6 4005022 4005066 -185274488 + L1MA9 LINE L1 6272 6312 0 2380 210 50 114 chr6 4005066 4005625 -185273929 - L1ME2 LINE L1 -513 5651 5176 349 209 63 4 chr6 4006292 4006407 -185273147 + MIR SINE MIR 19 146 -63 2363 105 0 0 chr6 4006414 4006718 -185272836 - AluSx SINE Alu -8 304 1 233 150 0 0 chr6 4006758 4006798 -185272756 - Alu SINE Alu -7 126 87 1461 119 0 0 chr6 4006800 4006993 -185272561 - AluSq SINE Alu -120 193 1 1958 112 0 18 chr6 4007357 4007633 -185271921 - AluSx SINE Alu 0 312 42 183 125 83 0 chr6 4007735 4007807 -185271747 + (TA)n Simple_repeat Simple_repeat 2 79 0 1952 123 27 17 chr6 4007882 4008174 -185271380 + AluSx SINE Alu 1 295 -17 416 239 22 46 chr6 4008708 4008927 -185270627 + L1ME4a LINE L1 5709 6121 0 302 222 86 20 chr6 4008964 4009070 -185270484 + MIR3 SINE MIR 79 194 -14 528 310 64 74 chr6 4010462 4011000 -185268554 - L2 LINE L2 -2 3270 2733 1706 249 41 21 chr6 4011011 4011526 -185268028 - L1ME2 LINE L1 -8 6156 5632 2014 116 0 0 chr6 4011602 4011869 -185267685 - AluSg SINE Alu -2 308 42 1876 164 33 9 chr6 4012766 4013102 -185266452 - MER2 DNA MER2_type 0 344 1 249 108 0 0 chr6 4013287 4013324 -185266230 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 1999 132 17 3 chr6 4013324 4013611 -185265943 - AluSx SINE Alu -21 291 1 266 322 203 0 chr6 4013615 4013792 -185265762 + MIR SINE MIR 50 262 0 25 0 0 0 chr6 4015709 4015734 -185263820 + AT_rich Low_complexity Low_complexity 1 25 0 2236 135 0 0 chr6 4015772 4016084 -185263470 + AluSx SINE Alu 1 312 0 1039 258 31 28 chr6 4016250 4016572 -185262982 - MER77 LTR ERV1 -6 599 277 528 248 106 47 chr6 4016832 4016962 -185262592 - L1MC5 LINE L1 -31 7930 7809 2178 117 7 0 chr6 4016962 4017261 -185262293 - AluSx SINE Alu -11 301 1 528 248 106 47 chr6 4017261 4017534 -185262020 - L1MC5 LINE L1 -152 7809 7503 441 263 80 144 chr6 4019670 4020419 -185259135 - L1M2 LINE L1 -5489 1360 660 228 67 0 0 chr6 4020701 4020731 -185258823 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 222 237 0 66 chr6 4020929 4021005 -185258549 - MIR SINE MIR -129 133 63 2082 113 14 3 chr6 4021115 4021408 -185258146 - AluSq SINE Alu -17 296 1 857 174 73 18 chr6 4021719 4021937 -185257617 - LTR37B LTR ERV1 -42 426 197 2558 251 103 39 chr6 4022636 4023488 -185256066 - ERVL LTR ERVL -692 5072 4166 700 227 122 46 chr6 4023568 4023872 -185255682 - HAL1 LINE L1 -1069 1438 1112 441 258 24 72 chr6 4023896 4024063 -185255491 - L1MD2 LINE L1 -2 6357 6199 1950 234 86 4 chr6 4025390 4025878 -185253676 - L1MD2 LINE L1 -144 6215 5688 642 248 41 60 chr6 4025878 4026028 -185253526 - HAL1 LINE L1 -1400 1107 956 2166 115 7 3 chr6 4026028 4026333 -185253221 - AluSx SINE Alu -6 306 1 642 248 41 60 chr6 4026333 4026496 -185253058 - HAL1 LINE L1 -1551 956 800 622 130 0 46 chr6 4026541 4026649 -185252905 - MLT1J2 LTR MaLR -2 448 346 270 299 28 40 chr6 4026720 4026897 -185252657 + HAL1 LINE L1 2258 2432 -75 2036 149 41 24 chr6 4027110 4027479 -185252075 - THE1C LTR MaLR 0 375 1 262 236 67 22 chr6 4027738 4027827 -185251727 - L1MD2 LINE L1 -863 5283 5191 271 252 0 54 chr6 4027828 4027942 -185251612 - MIR SINE MIR -97 111 17 3280 126 6 12 chr6 4027989 4028483 -185251071 + L1PA13 LINE L1 5666 6156 -7 469 269 58 32 chr6 4028497 4028653 -185250901 + MIR SINE MIR 24 183 -79 23 33 0 0 chr6 4028706 4028736 -185250818 + AT_rich Low_complexity Low_complexity 1 30 0 677 274 18 39 chr6 4029120 4029401 -185250153 + MARNA DNA Mariner 191 465 -121 249 211 92 13 chr6 4029333 4029409 -185250145 - MARNA DNA Mariner -395 191 110 * 2551 124 5 22 chr6 4029700 4030070 -185249484 + THE1B LTR MaLR 1 364 0 750 181 9 0 chr6 4031332 4031448 -185248106 + FLAM_C SINE Alu 1 117 -16 216 0 0 0 chr6 4031454 4031478 -185248076 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2428 84 0 0 chr6 4032060 4032387 -185247167 + AluSc SINE Alu 1 309 0 955 174 0 0 chr6 4032466 4032627 -185246927 - FRAM SINE Alu -4 172 12 292 281 0 0 chr6 4035414 4035478 -185244076 - L2 LINE L2 -5 3267 3204 2284 92 0 10 chr6 4035941 4036247 -185243307 + AluSg SINE Alu 1 303 -7 869 176 84 130 chr6 4036248 4036471 -185243083 - MLT1B LTR MaLR 0 390 181 2341 83 3 0 chr6 4036471 4036771 -185242783 - AluSc SINE Alu -6 303 3 869 176 84 130 chr6 4036771 4036831 -185242723 - MLT1B LTR MaLR -209 181 120 916 214 144 28 chr6 4036831 4037116 -185242438 - LTR36 LTR ERV1 -1 610 293 356 185 0 0 chr6 4037283 4037346 -185242208 - MLT1C LTR MaLR -263 127 65 3373 116 22 41 chr6 4037346 4037931 -185241623 + MER4B LTR ERV1 1 574 -36 448 95 0 81 chr6 4037962 4038036 -185241518 - MLT1C LTR MaLR -399 68 1 1794 241 47 9 chr6 4038073 4038497 -185241057 + MER21B LTR ERV1 12 451 -412 873 121 0 0 chr6 4038506 4038630 -185240924 - FRAM SINE Alu -1 175 52 3897 138 98 8 chr6 4038630 4039281 -185240273 - MER50 LTR ERV1 -24 710 1 346 210 0 0 chr6 4039281 4039339 -185240215 - AluJ/FLAM SINE Alu -244 58 1 971 254 50 53 chr6 4039347 4039685 -185239869 + MER21B LTR ERV1 466 802 -61 2334 104 0 0 chr6 4040102 4040400 -185239154 + AluSq SINE Alu 1 298 -15 278 309 0 0 chr6 4040458 4040539 -185239015 + L1ME LINE L1 4263 4343 -1803 633 260 61 25 chr6 4040952 4040981 -185238573 + MIR SINE MIR 52 79 -183 1764 161 27 3 chr6 4040981 4041273 -185238281 + AluJb SINE Alu 4 302 -10 633 260 61 25 chr6 4041273 4041439 -185238115 + MIR SINE MIR 79 254 -8 284 345 44 32 chr6 4041501 4041583 -185237971 + L1ME LINE L1 5319 5399 -722 2083 133 3 0 chr6 4041583 4041883 -185237671 + AluSx SINE Alu 1 301 -11 284 345 44 32 chr6 4041883 4042139 -185237415 + L1ME LINE L1 5399 5661 -460 234 333 29 29 chr6 4043862 4043967 -185235587 - L2 LINE L2 -8 3305 3201 789 85 171 0 chr6 4043967 4044096 -185235458 + LTR24C LTR ERV1 1 151 -484 252 277 30 50 chr6 4044178 4044279 -185235275 - L2 LINE L2 -480 2834 2736 335 67 0 50 chr6 4044726 4044786 -185234768 + (A)n Simple_repeat Simple_repeat 1 57 0 1013 119 0 0 chr6 4044837 4044971 -185234583 + AluSq/x SINE Alu 2 135 -178 1831 162 3 7 chr6 4044971 4045267 -185234287 + AluSx SINE Alu 1 295 -17 1676 144 39 35 chr6 4047015 4047300 -185232254 + AluJo SINE Alu 1 286 -26 553 221 123 7 chr6 4047652 4047806 -185231748 + MIR SINE MIR 57 228 -34 1887 59 0 0 chr6 4047896 4048117 -185231437 - AluY SINE Alu -17 294 74 1861 153 3 10 chr6 4049008 4049308 -185230246 + AluJb SINE Alu 1 298 -14 392 313 108 5 chr6 4049667 4049862 -185229692 + LTR16A LTR ERVL 158 372 -78 636 307 180 13 chr6 4050194 4050510 -185229044 - MLT1I LTR MaLR 0 409 41 2087 139 38 46 chr6 4050639 4050985 -185228569 + MER2 DNA MER2_type 1 343 -1 229 267 174 0 chr6 4051092 4051178 -185228376 - L2 LINE L2 -4 3309 3209 1145 115 4 106 chr6 4051297 4051532 -185228022 + L1MB7 LINE L1 5907 6117 -67 2418 66 0 7 chr6 4051564 4051867 -185227687 - AluY SINE Alu -10 301 1 351 44 0 0 chr6 4051870 4051915 -185227639 + (T)n Simple_repeat Simple_repeat 1 45 0 878 263 110 53 chr6 4052087 4053344 -185226210 + L1M4 LINE L1 3790 5163 -983 2235 104 3 10 chr6 4053344 4053653 -185225901 + AluSg SINE Alu 1 307 -3 878 263 110 53 chr6 4053653 4053670 -185225884 + L1M4 LINE L1 5163 5178 -968 2100 95 0 0 chr6 4053680 4053944 -185225610 + AluSq SINE Alu 1 264 -49 455 273 43 91 chr6 4054196 4054427 -185225127 - MIR SINE MIR -42 220 1 199 209 0 47 chr6 4054735 4054778 -185224776 + L2 LINE L2 3215 3255 -17 22 56 0 0 chr6 4054901 4054937 -185224617 + AT_rich Low_complexity Low_complexity 1 36 0 441 295 61 120 chr6 4055683 4055823 -185223731 - L2 LINE L2 -1 3312 3165 2214 100 13 0 chr6 4055823 4056122 -185223432 + AluSp SINE Alu 1 303 -10 441 295 61 120 chr6 4056122 4056541 -185223013 - L2 LINE L2 -148 3165 2768 1034 134 6 39 chr6 4056687 4056866 -185222688 - FRAM SINE Alu -1 175 3 846 209 60 0 chr6 4057388 4057603 -185221951 + Charlie1 DNA MER1_type 2534 2761 0 406 289 170 7 chr6 4058006 4058141 -185221413 + MER5A DNA MER1_type 33 189 0 501 302 67 41 chr6 4058439 4058783 -185220771 + L1MEc LINE L1 32 384 -6012 6099 174 22 18 chr6 4058888 4059798 -185219756 + L1 LINE L1 4081 4997 -1149 2025 125 31 7 chr6 4059798 4060087 -185219467 + AluSx SINE Alu 1 296 -16 6099 174 22 18 chr6 4060087 4060378 -185219176 + L1 LINE L1 4997 5286 -860 1015 175 0 28 chr6 4060382 4060559 -185218995 + AluJo SINE Alu 16 187 -125 1121 148 0 44 chr6 4060561 4060764 -185218790 + AluJo SINE Alu 119 312 0 1222 245 119 42 chr6 4060765 4061344 -185218210 + L1MEc LINE L1 1737 2347 -3868 2126 107 0 0 chr6 4061344 4061659 -185217895 + AluSg SINE Alu 1 315 0 1222 245 119 42 chr6 4061659 4061924 -185217630 + L1MEc LINE L1 2347 2590 -3625 977 291 150 28 chr6 4061987 4062382 -185217172 + L2 LINE L2 2339 2809 -505 809 189 8 0 chr6 4062382 4062514 -185217040 - FLAM_C SINE Alu 0 133 1 977 291 150 28 chr6 4062514 4062619 -185216935 + L2 LINE L2 2809 2900 -414 2260 85 0 0 chr6 4062676 4062988 -185216566 + AluSg SINE Alu 1 312 0 24 0 0 0 chr6 4063053 4063077 -185216477 + AT_rich Low_complexity Low_complexity 1 24 0 311 327 152 14 chr6 4063308 4063519 -185216035 - MIR SINE MIR -21 241 2 255 257 88 22 chr6 4063698 4063834 -185215720 + L1ME4a LINE L1 5944 6088 -33 300 296 114 0 chr6 4065606 4065738 -185213816 + MIR SINE MIR 20 166 -96 1932 84 73 14 chr6 4065842 4066128 -185213426 - AluSq SINE Alu -10 303 1 2354 65 17 3 chr6 4066328 4066621 -185212933 - AluSx SINE Alu -14 298 2 198 0 0 0 chr6 4068176 4068198 -185211356 + (T)n Simple_repeat Simple_repeat 1 22 0 207 88 0 0 chr6 4068475 4068509 -185211045 + (T)n Simple_repeat Simple_repeat 1 34 0 811 195 58 6 chr6 4069331 4069505 -185210049 - MIR SINE MIR -74 188 6 1087 183 48 60 chr6 4069729 4069894 -185209660 - AluJb SINE Alu -3 309 147 2182 113 0 0 chr6 4069894 4070186 -185209368 - AluSc SINE Alu -17 292 1 1087 183 48 60 chr6 4070186 4070271 -185209283 - AluJb SINE Alu -165 147 62 535 194 0 0 chr6 4070274 4070367 -185209187 + FLAM_A SINE Alu 31 123 -19 2155 110 14 3 chr6 4070634 4070925 -185208629 - AluSx SINE Alu -18 294 1 245 295 95 0 chr6 4071874 4071969 -185207585 - L2 LINE L2 -2 3311 3208 1259 99 0 0 chr6 4072025 4072186 -185207368 - AluSp SINE Alu -15 298 138 300 53 0 0 chr6 4072286 4072324 -185207230 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 1593 166 55 35 chr6 4072409 4072699 -185206855 - AluJo SINE Alu -16 296 1 198 265 20 0 chr6 4073689 4073738 -185205816 + L2 LINE L2 3247 3296 -17 1848 175 153 0 chr6 4074354 4074754 -185204800 + LOR1b LTR ERV1 1 461 0 22 0 0 0 chr6 4074776 4074798 -185204756 + AT_rich Low_complexity Low_complexity 1 22 0 42 36 0 0 chr6 4074921 4074977 -185204577 + AT_rich Low_complexity Low_complexity 1 56 0 1505 147 88 26 chr6 4076845 4077118 -185202436 + AluJo SINE Alu 1 290 -22 685 249 23 17 chr6 4077308 4077485 -185202069 - MER5B DNA MER1_type 0 178 1 345 100 0 0 chr6 4077533 4077583 -185201971 + (CA)n Simple_repeat Simple_repeat 1 50 0 2318 137 16 29 chr6 4078210 4078590 -185200964 - THE1C LTR MaLR 0 375 1 10268 107 31 45 chr6 4078592 4080193 -185199361 - THE1C-int LTR MaLR -2 1578 1 2312 120 29 27 chr6 4080193 4080567 -185198987 - THE1C LTR MaLR 0 375 1 1260 186 93 47 chr6 4080657 4080958 -185198596 + MSTB1 LTR MaLR 1 315 -117 25 0 0 0 chr6 4081450 4081475 -185198079 + AT_rich Low_complexity Low_complexity 1 25 0 3321 159 3 52 chr6 4082224 4082670 -185196884 + MER73 LTR ERVL 15 422 -222 2329 89 3 29 chr6 4082670 4082984 -185196570 - AluY SINE Alu -5 306 1 3321 159 3 52 chr6 4082984 4083171 -185196383 + MER73 LTR ERVL 422 617 -27 1318 149 14 0 chr6 4083172 4083380 -185196174 - THE1C LTR MaLR 0 375 165 334 252 43 0 chr6 4083559 4083674 -185195880 - THE1C LTR MaLR -246 129 10 537 216 7 14 chr6 4083688 4083827 -185195727 - THE1C-int LTR MaLR -4 1576 1439 * 7275 119 34 41 chr6 4083822 4085097 -185194457 - THE1C-int LTR MaLR -367 1213 3 2659 102 11 3 chr6 4085099 4085471 -185194083 - THE1C LTR MaLR 0 375 1 299 301 199 15 chr6 4085777 4085973 -185193581 - MIR SINE MIR 0 262 31 623 235 22 34 chr6 4086015 4086194 -185193360 + MER5B DNA MER1_type 1 177 -1 282 164 0 0 chr6 4086230 4086285 -185193269 + (CA)n Simple_repeat Simple_repeat 2 56 0 516 321 75 11 chr6 4086615 4086895 -185192659 + MER102a DNA MER1_type 1 298 -32 2259 138 30 25 chr6 4087487 4087849 -185191705 + THE1B LTR MaLR 1 364 0 11686 90 13 10 chr6 4087849 4089425 -185190129 + THE1B-int LTR MaLR 1 1580 0 1069 164 55 32 chr6 4089427 4089646 -185189908 + THE1B LTR MaLR 3 226 -149 492 249 15 88 chr6 4089657 4089862 -185189692 + LTR4 LTR ERV1 10 199 -397 390 261 50 31 chr6 4090055 4090216 -185189338 + LTR4 LTR ERV1 318 481 -115 8728 162 27 27 chr6 4090231 4091841 -185187713 + L1P LINE L1 11 1620 -4526 1636 155 79 65 chr6 4091856 4092129 -185187425 + HERVL74 LTR ERVL 1243 1525 -4160 1928 128 0 21 chr6 4092129 4092439 -185187115 + AluSx SINE Alu 1 304 0 1636 155 79 65 chr6 4092439 4092531 -185187023 + HERVL74 LTR ERVL 1525 1614 -4071 1729 159 101 29 chr6 4092534 4092622 -185186932 + L1MA4 LINE L1 5642 5722 -578 1544 182 0 0 chr6 4092622 4092864 -185186690 + AluSx SINE Alu 1 242 -70 1729 159 101 29 chr6 4092864 4092895 -185186659 + L1MA4 LINE L1 5722 5749 -551 432 0 0 0 chr6 4092895 4092943 -185186611 + (CA)n Simple_repeat Simple_repeat 2 49 0 1729 159 101 29 chr6 4092943 4093200 -185186354 + L1MA4 LINE L1 5749 6046 -254 957 143 0 0 chr6 4093203 4093336 -185186218 + FLAM_C SINE Alu 1 133 -10 751 309 77 3 chr6 4093360 4093726 -185185828 + L1ME LINE L1 4910 5302 -844 450 53 0 0 chr6 4093726 4093783 -185185771 - U2 snRNA snRNA -125 63 7 1656 41 0 0 chr6 4093783 4093979 -185185575 + L1PA5 LINE L1 5959 6154 0 401 230 29 7 chr6 4093981 4094139 -185185415 + L1ME LINE L1 5328 5486 -676 18806 127 20 56 chr6 4094152 4097522 -185182032 + L1P LINE L1 12 3260 -2886 18359 78 18 5 chr6 4097701 4100938 -185178616 + L1PA6 LINE L1 2882 6153 -1 352 165 87 58 chr6 4100938 4101041 -185178513 + LTR4 LTR ERV1 477 582 -14 * 829 175 75 12 chr6 4101036 4101196 -185178358 + THE1B LTR MaLR 193 362 -2 225 204 0 0 chr6 4101433 4101477 -185178077 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 818 217 44 113 chr6 4101574 4102077 -185177477 + LTR37B LTR ERV1 1 468 0 1541 231 50 29 chr6 4102085 4102540 -185177014 - L1MC4 LINE L1 -96 7946 7482 664 240 0 0 chr6 4103027 4103156 -185176398 + FLAM_A SINE Alu 1 129 -4 2775 258 97 16 chr6 4104185 4105277 -185174277 - L1M4 LINE L1 -1824 4322 3143 1316 190 62 0 chr6 4105315 4105573 -185173981 - AluJo SINE Alu -38 274 1 444 237 0 0 chr6 4105642 4105781 -185173773 + L1M4 LINE L1 3047 3185 -2961 1111 269 111 24 chr6 4106260 4106368 -185173186 + HERV16 LTR ERVL 871 968 -4028 1935 60 0 9 chr6 4106368 4106600 -185172954 - AluY SINE Alu -14 297 68 1111 269 111 24 chr6 4106600 4106915 -185172639 + HERV16 LTR ERVL 968 1331 -3665 285 29 0 0 chr6 4107191 4107225 -185172329 + (TG)n Simple_repeat Simple_repeat 2 35 0 2404 108 57 5 chr6 4107328 4107698 -185171856 - L1PA11 LINE L1 -1 6173 5785 2267 125 3 0 chr6 4107704 4108015 -185171539 - AluSx SINE Alu 0 312 1 25 0 0 0 chr6 4109000 4109025 -185170529 + AT_rich Low_complexity Low_complexity 1 25 0 2842 109 144 2 chr6 4109183 4109649 -185169905 - THE1C-int LTR MaLR -1045 535 4 1839 155 61 22 chr6 4109652 4110013 -185169541 - THE1C LTR MaLR 0 375 1 4395 195 19 20 chr6 4110043 4110368 -185169186 - L1MA9 LINE L1 -161 6151 5827 2256 103 0 16 chr6 4110368 4110678 -185168876 - AluY SINE Alu -6 305 1 4395 195 19 20 chr6 4110678 4110711 -185168843 - L1MA9 LINE L1 -485 5827 5795 348 24 0 0 chr6 4110711 4110752 -185168802 + (CA)n Simple_repeat Simple_repeat 2 42 0 4395 195 19 20 chr6 4110752 4111197 -185168357 - L1MA9 LINE L1 -517 5795 5351 2361 101 0 0 chr6 4111197 4111494 -185168060 - AluSx SINE Alu -15 297 1 2442 74 0 3 chr6 4111499 4111798 -185167756 - AluY SINE Alu -13 298 1 4395 195 19 20 chr6 4111798 4112381 -185167173 - L1MA9 LINE L1 -965 5347 4765 934 221 67 0 chr6 4112383 4112578 -185166976 - AluJb SINE Alu -23 289 82 184 317 0 0 chr6 4162878 4162938 -185116616 + MIR SINE MIR 47 106 -156 531 274 177 23 chr6 4162949 4163339 -185116215 + MLT1J2 LTR MaLR 1 450 0 2608 57 0 0 chr6 4163453 4163751 -185115803 + AluY SINE Alu 2 299 -12 185 108 27 0 chr6 4164198 4164235 -185115319 + CT-rich Low_complexity Low_complexity 3 40 0 615 235 86 29 chr6 4164324 4164567 -185114987 - L1ME4a LINE L1 -177 5944 5688 2569 186 24 24 chr6 4164815 4165321 -185114233 + MLT2B2 LTR ERVL 2 507 -8 694 194 19 0 chr6 4165460 4165620 -185113934 + CT-rich Low_complexity Low_complexity 4 166 0 4566 184 40 25 chr6 4165638 4167253 -185112301 - L1MB7 LINE L1 -16 6168 4530 2291 118 0 0 chr6 4167520 4167825 -185111729 + AluSq SINE Alu 1 305 -8 193 284 28 110 chr6 4167946 4168055 -185111499 + MIR SINE MIR 36 135 -73 182 282 64 0 chr6 4169815 4169893 -185109661 - L2 LINE L2 -57 3215 3133 194 366 113 7 chr6 4169985 4170127 -185109427 - L2 LINE L2 -169 3103 2947 202 186 17 85 chr6 4170356 4170415 -185109139 - L2 LINE L2 -488 2826 2772 281 297 82 36 chr6 4170516 4170711 -185108843 + Charlie8 DNA MER1_type 115 1416 -1001 551 307 199 28 chr6 4171867 4171890 -185107664 - L2 LINE L2 0 3272 3254 1643 253 103 2 chr6 4171890 4172336 -185107218 - LTR16C LTR ERVL 0 491 1 551 307 199 28 chr6 4172336 4172638 -185106916 - L2 LINE L2 -18 3254 2891 2441 68 0 0 chr6 4172639 4172933 -185106621 + AluY SINE Alu 1 294 -17 1830 167 7 0 chr6 4173326 4173632 -185105922 - Tigger3(Golem) DNA MER2_type -1 3028 2721 389 231 77 0 chr6 4173624 4173702 -185105852 - Tigger3(Golem) DNA MER2_type -2935 94 11 * 775 220 146 14 chr6 4173730 4174000 -185105554 + MLT1G1 LTR MaLR 1 260 -330 437 171 40 51 chr6 4174060 4174236 -185105318 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 200 316 144 7 chr6 4175618 4175757 -185103797 - L2 LINE L2 -174 3098 2941 600 269 83 25 chr6 4175880 4176117 -185103437 - MIR SINE MIR 0 262 14 327 297 51 8 chr6 4176157 4176275 -185103279 + MER5A DNA MER1_type 43 165 -24 481 353 22 11 chr6 4176366 4176550 -185103004 + MIR3 SINE MIR 16 201 -7 2586 163 39 34 chr6 4176615 4176653 -185102901 - MLT1C LTR MaLR 0 467 431 2045 95 0 79 chr6 4176653 4176970 -185102584 + AluSq SINE Alu 1 292 -21 2586 163 39 34 chr6 4176970 4177396 -185102158 - MLT1C LTR MaLR -36 431 1 7109 141 47 23 chr6 4177474 4178124 -185101430 + Tigger3b DNA MER2_type 1 695 -2333 1778 164 6 41 chr6 4178124 4178302 -185101252 - AluJo SINE Alu -6 306 142 2022 145 0 7 chr6 4178302 4178598 -185100956 - AluSx SINE Alu -18 294 1 1778 164 6 41 chr6 4178598 4178736 -185100818 - AluJo SINE Alu -170 142 1 7109 141 47 23 chr6 4178736 4179287 -185100267 + Tigger3b DNA MER2_type 695 1231 0 469 247 33 54 chr6 4179565 4179788 -185099766 + L1ME4a LINE L1 5559 5718 -403 996 227 145 93 chr6 4179833 4180578 -185098976 - MER20B DNA MER1_type 0 784 1 253 258 81 32 chr6 4180784 4180908 -185098646 + L1ME4a LINE L1 5992 6121 0 1658 160 7 21 chr6 4180930 4181251 -185098303 + AluSx SINE Alu 1 317 0 1160 193 33 0 chr6 4181266 4181478 -185098076 - MER20 DNA MER1_type 0 219 1 467 279 123 18 chr6 4181480 4181699 -185097855 + MIR SINE MIR 9 250 -12 827 217 16 27 chr6 4183411 4183595 -185095959 + MER5A DNA MER1_type 1 182 -7 1365 195 92 23 chr6 4183612 4183915 -185095639 - MER2 DNA MER2_type 0 345 22 313 370 92 40 chr6 4184494 4184721 -185094833 - L2 LINE L2 -4 3268 3030 4342 133 8 39 chr6 4185114 4185837 -185093717 + MER50 LTR ERV1 34 734 0 206 333 63 0 chr6 4186904 4186967 -185092587 + MIR SINE MIR 23 89 -173 2319 184 29 86 chr6 4187171 4187753 -185091801 + MLT2B3 LTR ERVL 6 554 0 189 291 214 0 chr6 4188068 4188171 -185091383 + L3 LINE CR1 1105 1229 -348 21 0 0 0 chr6 4189114 4189135 -185090419 + AT_rich Low_complexity Low_complexity 1 21 0 2132 122 0 0 chr6 4190549 4190837 -185088717 - AluSg1 SINE Alu -21 288 1 215 303 40 0 chr6 4190890 4190966 -185088588 - MER5A DNA MER1_type -110 79 1 290 297 318 8 chr6 4191767 4192006 -185087548 - L2 LINE L2 -1 3271 2959 27 0 0 0 chr6 4192477 4192504 -185087050 + AT_rich Low_complexity Low_complexity 1 27 0 1751 91 0 28 chr6 4192851 4193104 -185086450 - L1PA14 LINE L1 -530 5631 5386 3431 104 34 8 chr6 4193105 4193604 -185085950 + L1PA14 LINE L1 5650 6161 0 1015 253 48 83 chr6 4193662 4194076 -185085478 + L2 LINE L2 2766 3152 -161 3984 114 22 5 chr6 4194076 4194666 -185084888 - L1MC1 LINE L1 -11 6322 5723 1015 253 48 83 chr6 4194666 4194823 -185084731 + L2 LINE L2 3152 3313 0 414 322 72 11 chr6 4195108 4195373 -185084181 + L1M2 LINE L1 5286 5566 -601 395 298 113 31 chr6 4195615 4195907 -185083647 - MER97c DNA MER1_type? -1 1089 774 738 176 0 40 chr6 4196124 4196272 -185083282 - MER97c DNA MER1_type? -466 624 483 2381 94 7 0 chr6 4196296 4196604 -185082950 - AluSg SINE Alu 0 310 1 1606 208 61 21 chr6 4196604 4196983 -185082571 - MER97b DNA MER1_type? -652 401 8 387 202 34 0 chr6 4197076 4197165 -185082389 - L1M4 LINE L1 -1210 5118 5027 5814 213 37 49 chr6 4197165 4198900 -185080654 + L1 LINE L1 1160 2871 -3917 2709 168 14 0 chr6 4198900 4199412 -185080142 + L1 LINE L1 4960 5478 -1310 7461 182 33 15 chr6 4199428 4201368 -185078186 - L1M4 LINE L1 -4065 1263 3 892 219 214 21 chr6 4201369 4201757 -185077797 - L1M4 LINE L1 -1371 4957 4495 616 232 112 21 chr6 4202280 4202565 -185076989 + L1ME4a LINE L1 5808 6118 -3 767 191 40 12 chr6 4203904 4204077 -185075477 + MER5B DNA MER1_type 1 178 0 400 195 0 37 chr6 4205236 4205318 -185074236 + MER21B LTR ERV1 12 90 -773 2739 228 55 50 chr6 4205340 4206159 -185073395 + MER21B LTR ERV1 19 841 -22 363 248 139 0 chr6 4206787 4206888 -185072666 + MIR SINE MIR 73 187 -75 368 273 169 23 chr6 4206962 4207134 -185072420 - MIR SINE MIR -43 219 23 2017 106 7 0 chr6 4207182 4207457 -185072097 - AluSx SINE Alu 0 312 36 485 263 79 7 chr6 4210152 4210304 -185069250 + MIR3 SINE MIR 24 186 -22 191 326 153 33 chr6 4210434 4210676 -185068878 + L2 LINE L2 2704 2974 -340 2376 87 7 3 chr6 4211497 4211795 -185067759 + AluSq SINE Alu 1 299 -14 3724 210 71 28 chr6 4211803 4213555 -185065999 - L1ME1 LINE L1 -5 6230 4400 534 217 129 42 chr6 4213626 4213843 -185065711 + MER106A DNA MER1_type 1 236 0 1740 309 22 18 chr6 4214048 4214758 -185064796 - L1ME1 LINE L1 -5607 789 77 259 297 76 0 chr6 4215021 4215139 -185064415 + L1MEd LINE L1 6 132 -5987 451 281 16 8 chr6 4215218 4215346 -185064208 + L2 LINE L2 3185 3313 0 988 284 66 33 chr6 4215621 4216078 -185063476 + L1MEd LINE L1 459 930 -5189 338 339 109 16 chr6 4216091 4216283 -185063271 + HAL1 LINE L1 1560 1769 -738 43276 34 25 1 chr6 4216344 4222349 -185057205 - L1PA3 LINE L1 0 6155 2 262 274 110 40 chr6 4222433 4222787 -185056767 + L1M4 LINE L1 4132 4510 -1636 2654 269 148 31 chr6 4222795 4223980 -185055574 - L2 LINE L2 -701 2613 1291 300 347 57 6 chr6 4223981 4224157 -185055397 + L1M4 LINE L1 4961 5145 -1001 1804 309 118 25 chr6 4224158 4224182 -185055372 + L2 LINE L2 1771 1791 -1523 4445 156 85 40 chr6 4224182 4225021 -185054533 + LTR13 LTR ERVK 1 886 -68 2201 103 0 3 chr6 4225021 4225331 -185054223 - AluY SINE Alu -2 309 1 4445 156 85 40 chr6 4225331 4225404 -185054150 + LTR13 LTR ERVK 886 954 0 16542 129 45 7 chr6 4225409 4227695 -185051859 - Tigger4(Zombi) DNA MER2_type 0 2731 328 549 0 0 0 chr6 4227695 4227756 -185051798 + (CA)n Simple_repeat Simple_repeat 2 62 0 16542 129 45 7 chr6 4227756 4228097 -185051457 - Tigger4(Zombi) DNA MER2_type -2403 328 2 1804 309 118 25 chr6 4228097 4229101 -185050453 + L2 LINE L2 1794 2901 -413 426 300 91 36 chr6 4229142 4229362 -185050192 + L2 LINE L2 3014 3245 -68 2240 225 100 26 chr6 4229494 4230653 -185048901 + L1ME2 LINE L1 4853 6130 -34 271 297 0 11 chr6 4230893 4230984 -185048570 + GA-rich Low_complexity Low_complexity 3 92 0 185 178 22 0 chr6 4231018 4231063 -185048491 + GA-rich Low_complexity Low_complexity 1 46 0 289 343 82 33 chr6 4231663 4231908 -185047646 - L2 LINE L2 -10 3262 3006 492 324 24 34 chr6 4232128 4232335 -185047219 + MIR SINE MIR 36 240 -22 1331 255 86 14 chr6 4233112 4233547 -185046007 - MLT1F LTR MaLR -18 524 24 1112 120 0 0 chr6 4233832 4234022 -185045532 - AluSg/x SINE Alu 0 316 127 238 292 124 29 chr6 4234388 4234525 -185045029 - MIR SINE MIR -79 183 34 328 302 13 13 chr6 4234969 4235128 -185044426 + CT-rich Low_complexity Low_complexity 1 159 0 2196 100 0 10 chr6 4236489 4236800 -185042754 - AluY SINE Alu -3 308 1 700 282 29 28 chr6 4237637 4238002 -185041552 + LTR16B LTR ERVL 34 451 -13 266 263 185 24 chr6 4238041 4238246 -185041308 - L2 LINE L2 -529 2785 2548 356 259 70 49 chr6 4238333 4238476 -185041078 + MIR3 SINE MIR 20 165 -43 378 181 14 0 chr6 4238517 4238589 -185040965 - L1MB3 LINE L1 -23 6160 6088 2524 166 32 11 chr6 4238716 4239185 -185040369 - L1MB3 LINE L1 -93 6090 5612 199 152 0 0 chr6 4239504 4239537 -185040017 + MIR3 SINE MIR 167 199 -9 381 311 40 20 chr6 4240501 4240652 -185038902 + LTR16A LTR ERVL 25 178 -272 874 238 123 53 chr6 4241251 4241683 -185037871 + LTR16B LTR ERVL 1 462 -2 213 232 29 58 chr6 4242214 4242283 -185037271 + L2 LINE L2 3132 3198 -74 1817 144 44 0 chr6 4242352 4242650 -185036904 - AluSx SINE Alu -1 311 1 320 271 34 126 chr6 4242837 4243187 -185036367 - L2 LINE L2 -37 3235 2918 5808 107 38 5 chr6 4243489 4243848 -185035706 - L1PA15 LINE L1 -5 6160 5814 387 0 0 0 chr6 4243848 4243891 -185035663 + (TG)n Simple_repeat Simple_repeat 2 44 0 5808 107 38 5 chr6 4243891 4244455 -185035099 - L1PA15 LINE L1 -351 5814 5213 426 94 0 0 chr6 4245241 4245305 -185034249 + (GGAA)n Simple_repeat Simple_repeat 1 64 0 3298 32 0 0 chr6 4245540 4245920 -185033634 + L1PA3 LINE L1 5775 6154 -1 397 232 13 73 chr6 4247035 4247186 -185032368 + MIR3 SINE MIR 10 151 -57 229 279 15 15 chr6 4247390 4247458 -185032096 - L2 LINE L2 0 3313 3246 2527 146 18 18 chr6 4249103 4249263 -185030291 - L1MB3 LINE L1 -2 6181 6022 1658 173 63 39 chr6 4249263 4249644 -185029910 - MLT1B LTR MaLR 0 390 1 2527 146 18 18 chr6 4249644 4249921 -185029633 - L1MB3 LINE L1 -160 6023 5744 247 333 23 0 chr6 4249967 4250054 -185029500 + L2 LINE L2 3184 3272 0 235 281 31 62 chr6 4250070 4250166 -185029388 - MIR SINE MIR -76 186 94 1051 189 19 0 chr6 4250418 4250630 -185028924 + MER20 DNA MER1_type 1 216 -3 506 260 73 50 chr6 4251203 4251422 -185028132 - MIR SINE MIR -14 248 25 2011 160 47 25 chr6 4251524 4251986 -185027568 - MLT2B1 LTR ERVL -1 514 1 897 217 84 57 chr6 4252512 4252844 -185026710 - LTR16A1 LTR ERVL 0 457 117 736 260 12 0 chr6 4255466 4255635 -185023919 - MER5A DNA MER1_type 0 189 19 338 273 102 8 chr6 4255747 4255875 -185023679 - MIR SINE MIR -69 193 54 256 259 71 0 chr6 4255868 4255953 -185023601 - MER5B DNA MER1_type -87 91 1 * 386 292 31 8 chr6 4256324 4256454 -185023100 - LTR33 LTR ERVL 0 521 389 489 255 64 64 chr6 4256487 4256570 -185022984 - LTR33 LTR ERVL -250 271 189 844 241 45 5 chr6 4256570 4256769 -185022785 + MER63A DNA MER1_type 4 210 0 489 255 64 64 chr6 4256769 4256889 -185022665 - LTR33 LTR ERVL -331 190 68 232 281 18 0 chr6 4257285 4257342 -185022212 - L2 LINE L2 -6 3266 3209 525 237 198 20 chr6 4257411 4257812 -185021742 - LTR33A LTR ERVL -5 518 2 2706 163 25 48 chr6 4257984 4258050 -185021504 - MLT2B2 LTR ERVL -2 513 447 1941 111 7 14 chr6 4258050 4258369 -185021185 - AluSx SINE Alu 0 317 1 2706 163 25 48 chr6 4258369 4258823 -185020731 - MLT2B2 LTR ERVL -68 447 3 311 272 39 19 chr6 4259065 4259168 -185020386 - MIR SINE MIR -67 141 37 600 262 13 13 chr6 4259500 4259649 -185019905 + MER63A DNA MER1_type 60 208 -2 766 224 13 69 chr6 4259918 4260150 -185019404 + MIR SINE MIR 44 262 0 510 296 96 50 chr6 4260277 4260557 -185018997 - L3 LINE CR1 -14 1563 1271 191 172 0 0 chr6 4260857 4260886 -185018668 - L3 LINE CR1 -303 1274 1246 299 256 80 16 chr6 4262211 4262336 -185017218 + L2 LINE L2 2132 2264 -1050 1861 140 146 3 chr6 4262420 4262763 -185016791 + Ricksha DNA DNA 30 421 -2825 243 288 85 25 chr6 4263024 4263142 -185016412 + L2 LINE L2 2648 2772 -542 371 244 17 122 chr6 4263150 4263275 -185016279 - MIR SINE MIR -4 258 154 2254 102 0 7 chr6 4263275 4263580 -185015974 - AluSx SINE Alu -9 303 1 371 244 17 122 chr6 4263580 4263626 -185015928 - MIR SINE MIR -108 154 105 217 305 40 46 chr6 4264234 4264385 -185015169 + L2 LINE L2 2919 3068 -204 315 245 91 42 chr6 4265048 4265191 -185014363 + MIR SINE MIR 83 232 -30 217 203 31 62 chr6 4265165 4265229 -185014325 + L2 LINE L2 3252 3313 0 * 1938 123 17 17 chr6 4265527 4265827 -185013727 + AluSq SINE Alu 1 300 -13 259 264 47 28 chr6 4266608 4266714 -185012840 - L3 LINE CR1 -390 1187 1080 268 281 170 0 chr6 4268071 4268183 -185011371 - MIR SINE MIR -71 137 15 200 326 84 21 chr6 4268342 4268437 -185011117 - MIR3 SINE MIR -102 106 6 297 235 47 12 chr6 4268449 4268534 -185011020 - MIR SINE MIR -69 139 52 388 234 171 0 chr6 4269585 4269696 -185009858 - MER91C DNA MER1_type -10 130 1 1405 149 54 0 chr6 4270946 4271187 -185008367 + AluJo SINE Alu 48 301 -11 1813 213 57 31 chr6 4271472 4271917 -185007637 + LTR10B LTR ERV1 1 547 0 9276 243 52 70 chr6 4271917 4275200 -185004354 + HERVI LTR ERV1 1 3223 -4562 9919 224 6 17 chr6 4275205 4277238 -185002316 + HERVI LTR ERV1 4354 6364 -285 681 328 0 0 chr6 4277844 4278042 -185001512 - MIR SINE MIR -5 257 60 245 252 37 37 chr6 4278103 4278210 -185001344 - L1ME4a LINE L1 -48 6073 5967 243 241 81 0 chr6 4278315 4278402 -185001152 - L1ME4a LINE L1 -319 5802 5709 503 209 73 72 chr6 4278406 4278639 -185000915 + MLT1H LTR MaLR 1 278 -271 259 176 189 0 chr6 4278778 4278852 -185000702 + MLT1G LTR MaLR 495 582 -8 237 287 96 37 chr6 4279161 4279297 -185000257 - L1ME4a LINE L1 -595 5526 5383 263 230 0 120 chr6 4279348 4279448 -185000106 - L1ME2 LINE L1 -138 6026 5939 1686 118 8 0 chr6 4279523 4279768 -184999786 - L1MA5A LINE L1 0 6297 6051 1360 150 0 5 chr6 4280269 4280482 -184999072 + AluSx SINE Alu 1 212 -100 365 121 0 0 chr6 4280483 4280541 -184999013 + AluYb8 SINE Alu 77 134 -174 2237 118 0 9 chr6 4280541 4280856 -184998698 + AluSq SINE Alu 1 312 -1 575 122 0 0 chr6 4280857 4280947 -184998607 - L1P LINE L1 -851 5295 5206 2799 46 3 6 chr6 4280947 4281270 -184998284 + L1PA8 LINE L1 5838 6165 -7 234 227 0 0 chr6 4281439 4281483 -184998071 + L2 LINE L2 3219 3262 -10 557 266 117 0 chr6 4281957 4282111 -184997443 - MIR3 SINE MIR -3 205 34 2206 203 40 143 chr6 4283198 4284509 -184995045 + L1ME3 LINE L1 4987 6153 -9 517 177 32 24 chr6 4284509 4284633 -184994921 + L1MB2 LINE L1 6047 6171 0 275 188 42 0 chr6 4284643 4284691 -184994863 + MLT1L LTR MaLR 337 386 -81 21 0 0 0 chr6 4284809 4284830 -184994724 + AT_rich Low_complexity Low_complexity 1 21 0 221 248 239 44 chr6 4285318 4285431 -184994123 - L2 LINE L2 0 3313 3179 495 205 94 60 chr6 4285749 4285983 -184993571 + MLT1L LTR MaLR 38 279 -336 323 284 118 6 chr6 4286038 4286207 -184993347 + MLT1L LTR MaLR 394 581 -34 483 289 8 0 chr6 4286635 4286756 -184992798 - MER5A DNA MER1_type -67 122 1 185 282 99 56 chr6 4286851 4286922 -184992632 + MIR SINE MIR 111 184 -78 298 271 232 22 chr6 4288943 4289124 -184990430 - MIR SINE MIR -38 224 6 210 214 18 36 chr6 4289158 4289214 -184990340 + L2 LINE L2 3215 3269 -3 183 129 0 0 chr6 4290088 4290119 -184989435 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 217 236 91 0 chr6 4290782 4290837 -184988717 + MIR SINE MIR 61 120 -142 803 174 0 0 chr6 4292594 4292715 -184986839 + FLAM_A SINE Alu 1 121 -12 24 0 0 0 chr6 4292859 4292883 -184986671 + AT_rich Low_complexity Low_complexity 1 24 0 10006 159 7 31 chr6 4292943 4296025 -184983529 + L1PA8A LINE L1 5 3071 -3390 201 74 0 0 chr6 4296038 4296065 -184983489 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 18527 112 8 14 chr6 4296065 4298695 -184980859 + L1PA8A LINE L1 3051 5670 -776 2198 63 41 0 chr6 4298695 4298988 -184980566 + AluY SINE Alu 1 304 0 18527 112 8 14 chr6 4298988 4299749 -184979805 + L1PA8A LINE L1 5670 6434 -12 188 349 0 0 chr6 4299886 4299949 -184979605 - L2 LINE L2 -249 3064 3002 197 267 50 0 chr6 4300426 4300486 -184979068 + L2 LINE L2 3250 3312 -1 28 0 0 0 chr6 4300630 4300658 -184978896 + AT_rich Low_complexity Low_complexity 1 28 0 468 252 164 25 chr6 4300789 4300948 -184978606 + MER5A DNA MER1_type 9 189 0 664 52 0 0 chr6 4301493 4301570 -184977984 - MER4B LTR ERV1 0 610 534 251 250 0 0 chr6 4301582 4301634 -184977920 + LTR30 LTR ERV1 1 52 -670 1005 134 38 91 chr6 4301634 4301911 -184977643 + LTR12 LTR ERV1 55 230 -484 275 227 98 30 chr6 4301919 4302051 -184977503 + LTR12 LTR ERV1 142 282 -432 368 186 35 0 chr6 4302053 4302139 -184977415 + LTR30 LTR ERV1 551 639 -83 687 102 0 0 chr6 4302142 4302230 -184977324 + LTR12 LTR ERV1 478 565 -149 334 94 9 13 chr6 4302230 4302290 -184977264 - MLT2D LTR ERVL -370 44 1 457 284 99 12 chr6 4302531 4302693 -184976861 + MIR SINE MIR 8 183 -79 276 231 77 0 chr6 4302718 4302796 -184976758 - L2 LINE L2 -17 3296 3213 598 224 29 81 chr6 4303401 4303774 -184975780 + MLT1D LTR MaLR 20 356 -149 474 264 31 0 chr6 4303844 4303973 -184975581 + L1MEc LINE L1 1509 1641 -4755 361 286 119 30 chr6 4303976 4304144 -184975410 + MIR SINE MIR 68 250 -12 2470 123 37 13 chr6 4304378 4304759 -184974795 - MLT1B LTR MaLR 0 390 1 4860 265 63 34 chr6 4304956 4305796 -184973758 + L1MEc LINE L1 2112 2926 -3289 2109 105 44 0 chr6 4305796 4306092 -184973462 + AluY SINE Alu 1 309 -2 4860 265 63 34 chr6 4306092 4307541 -184972013 + L1MEc LINE L1 2926 4436 -1779 8875 223 70 42 chr6 4307549 4308792 -184970762 + L1MCb LINE L1 180 1387 -5177 1552 211 7 3 chr6 4308792 4309100 -184970454 + AluJo SINE Alu 1 309 -3 8875 223 70 42 chr6 4309100 4309446 -184970108 + L1MCb LINE L1 1387 1722 -4842 2203 138 53 28 chr6 4309446 4309801 -184969753 - THE1B LTR MaLR 0 364 1 8875 223 70 42 chr6 4309801 4312457 -184967097 + L1MCb LINE L1 1722 4630 -1934 2182 118 0 6 chr6 4312457 4312770 -184966784 + AluY SINE Alu 1 311 0 8875 223 70 42 chr6 4312770 4313528 -184966026 + L1MCb LINE L1 4630 5365 -1199 2305 78 0 7 chr6 4313598 4313905 -184965649 - AluSx SINE Alu 0 305 1 1123 8 0 0 chr6 4315552 4315672 -184963882 + 5S rRNA rRNA 1 120 -1 3713 50 2 0 chr6 4315672 4316134 -184963420 - Harlequin LTR ERV1 -6329 567 105 186 216 318 34 chr6 4316216 4316304 -184963250 + MER5A DNA MER1_type 1 113 -76 728 210 24 24 chr6 4316305 4316472 -184963082 + MER5A DNA MER1_type 1 167 -22 194 259 111 0 chr6 4316481 4316535 -184963019 + MER5A DNA MER1_type 110 169 -20 2598 192 65 2 chr6 4316931 4317451 -184962103 + MER74A LTR ERVL 6 558 0 291 329 81 13 chr6 4317852 4318001 -184961553 + MIR SINE MIR 100 258 -4 999 164 66 33 chr6 4318252 4318411 -184961143 + MER5A DNA MER1_type 1 168 -21 2098 135 66 14 chr6 4318411 4318758 -184960796 + MLT1A1 LTR MaLR 1 365 0 999 164 66 33 chr6 4318758 4318781 -184960773 + MER5A DNA MER1_type 168 189 0 1922 144 47 39 chr6 4319220 4319580 -184959974 - MLT1A1 LTR MaLR -2 363 1 497 194 10 10 chr6 4319988 4320091 -184959463 + MER5B DNA MER1_type 73 175 -3 2378 109 0 0 chr6 4320492 4320804 -184958750 - AluSx SINE Alu 0 312 1 2195 171 94 20 chr6 4321056 4321501 -184958053 + MLT2B2 LTR ERVL 1 478 -37 2095 74 4 4 chr6 4321936 4322206 -184957348 + AluSc SINE Alu 39 308 -1 1752 248 47 39 chr6 4322487 4322980 -184956574 + MLT1J LTR MaLR 7 503 -8 1223 174 43 13 chr6 4323138 4323368 -184956186 - MER96B DNA MER1_type? -180 237 1 262 171 0 0 chr6 4323856 4323897 -184955657 - 5S rRNA rRNA -79 42 2 306 0 0 0 chr6 4324141 4324175 -184955379 + (CA)n Simple_repeat Simple_repeat 1 34 0 2903 222 75 48 chr6 4324181 4324969 -184954585 + MER21B LTR ERV1 16 824 -39 4971 150 49 3 chr6 4325751 4326585 -184952969 + L1MA4A LINE L1 4443 5237 -1066 182 61 0 30 chr6 4326585 4326618 -184952936 + (CAAAA)n Simple_repeat Simple_repeat 4 35 0 4971 150 49 3 chr6 4326618 4327414 -184952140 + L1MA4A LINE L1 5237 6143 -160 1531 181 69 0 chr6 4327414 4327691 -184951863 + AluJb SINE Alu 1 296 -16 1986 136 0 10 chr6 4327738 4328033 -184951521 - L1PB1 LINE L1 -1 6150 5859 2283 82 38 0 chr6 4328033 4328324 -184951230 + AluSg SINE Alu 1 302 -8 259 254 16 32 chr6 4328476 4328539 -184951015 - L1M3c LINE L1 -6078 63 2 291 200 125 0 chr6 4328555 4328635 -184950919 - L1MC3 LINE L1 -8 7777 7688 222 303 13 0 chr6 4328642 4328718 -184950836 - L2 LINE L2 -2382 932 856 996 255 111 12 chr6 4328727 4329052 -184950502 - MLT1I LTR MaLR -25 384 28 2658 283 27 35 chr6 4329053 4329879 -184949675 - L2 LINE L2 -2479 835 17 309 238 38 12 chr6 4330187 4330267 -184949287 - L2 LINE L2 -1877 1437 1356 757 252 59 64 chr6 4330280 4330660 -184948894 - L1M4 LINE L1 -1602 4544 4165 2314 109 0 3 chr6 4330660 4330971 -184948583 - AluSg SINE Alu 0 310 1 757 252 59 64 chr6 4330971 4331030 -184948524 - L1M4 LINE L1 -1981 4165 4107 313 287 39 62 chr6 4331042 4331300 -184948254 - L1MEd LINE L1 -5164 955 704 827 198 36 30 chr6 4331301 4331468 -184948086 - FRAM SINE Alu -16 160 1 269 279 51 0 chr6 4331468 4331547 -184948007 - L1MEd LINE L1 -5416 703 621 4522 169 52 6 chr6 4331680 4332500 -184947054 - L1MD1 LINE L1 0 6242 5385 1895 33 0 5 chr6 4332714 4332928 -184946626 - L1PA5 LINE L1 -3 6151 5939 1455 251 48 5 chr6 4332928 4333346 -184946208 - L1MD1 LINE L1 -745 5401 4966 1283 276 59 46 chr6 4333519 4334080 -184945474 + Charlie7 DNA MER1_type 120 687 -1925 490 239 39 72 chr6 4334096 4334276 -184945278 - MLT1J LTR MaLR -12 499 326 302 164 0 0 chr6 4334277 4334338 -184945216 - L1MC3 LINE L1 -727 7058 6998 * 857 54 1 1 chr6 4334313 4334338 -184945216 + L1P LINE L1 5225 5249 -897 1446 19 0 0 chr6 4334338 4334495 -184945059 - L1PA4 LINE L1 -5 6150 5994 857 54 1 1 chr6 4334495 4334599 -184944955 + L1P LINE L1 5248 5354 -792 180 0 0 0 chr6 4335364 4335384 -184944170 + (TG)n Simple_repeat Simple_repeat 2 21 0 325 181 38 9 chr6 4336214 4336319 -184943235 + (TA)n Simple_repeat Simple_repeat 1 108 0 323 299 132 29 chr6 4336632 4336806 -184942748 - MIR SINE MIR -1 261 70 182 36 0 36 chr6 4336952 4336980 -184942574 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1211 55 0 0 chr6 4336980 4337125 -184942429 - MER107 DNA MER1_type -52 145 1 460 236 9 9 chr6 4337165 4337271 -184942283 + MER5B DNA MER1_type 73 178 0 334 307 9 0 chr6 4337544 4337658 -184941896 + L1ME LINE L1 5458 5572 -598 22 0 0 0 chr6 4337826 4337848 -184941706 + AT_rich Low_complexity Low_complexity 1 22 0 813 139 12 78 chr6 4338193 4338359 -184941195 + AluJo SINE Alu 85 239 -73 326 181 0 14 chr6 4338394 4338466 -184941088 + GA-rich Low_complexity Low_complexity 4 74 0 261 139 0 0 chr6 4338565 4338608 -184940946 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1991 254 75 34 chr6 4338873 4339731 -184939823 + L1MEc LINE L1 499 1391 -5005 275 259 76 0 chr6 4340542 4340673 -184938881 - L1ME4a LINE L1 -3 6118 5978 275 177 51 0 chr6 4340996 4341075 -184938479 + (TAA)n Simple_repeat Simple_repeat 1 83 0 324 286 9 108 chr6 4341129 4341342 -184938212 - L1M4 LINE L1 -2055 4091 3900 269 324 59 0 chr6 4341555 4341657 -184937897 - L2 LINE L2 -932 2382 2275 278 296 241 0 chr6 4342288 4342396 -184937158 - MIR SINE MIR -77 185 52 235 274 71 36 chr6 4342485 4342569 -184936985 - MIR SINE MIR -58 204 118 509 270 77 62 chr6 4343410 4343669 -184935885 - MLT1J LTR MaLR -4 507 245 1954 192 25 25 chr6 4344014 4344379 -184935175 - MLT1A1 LTR MaLR 0 365 1 229 255 177 21 chr6 4344381 4344522 -184935032 - L2 LINE L2 -11 3302 3140 703 241 294 0 chr6 4345477 4345797 -184933757 + Charlie2a DNA MER1_type 7 420 -2442 898 246 29 14 chr6 4345831 4346107 -184933447 + Charlie2a DNA MER1_type 738 1017 -1845 420 182 0 23 chr6 4346104 4346192 -184933362 + Charlie2a DNA MER1_type 2748 2833 -29 * 207 219 162 57 chr6 4347287 4347392 -184932162 - L2 LINE L2 -2 3270 3155 245 278 0 0 chr6 4348564 4348636 -184930918 + tRNA-Ile-ATT tRNA tRNA 3 74 -3 234 216 0 0 chr6 4349981 4350032 -184929522 + MER116 DNA Mariner 25 75 -5 1778 175 3 19 chr6 4350119 4350427 -184929127 + AluJo SINE Alu 1 303 -9 693 294 58 39 chr6 4350436 4350817 -184928737 + L1ME4a LINE L1 5377 5764 -357 408 327 62 34 chr6 4350822 4351030 -184928524 + MIR SINE MIR 13 226 -36 332 212 73 53 chr6 4351208 4351359 -184928195 + L1ME4a LINE L1 5964 6117 -4 1881 137 135 83 chr6 4351761 4352205 -184927349 + MLT1C LTR MaLR 1 467 0 1681 167 50 83 chr6 4352707 4353091 -184926463 + MLT1A2 LTR MaLR 4 374 0 600 274 71 56 chr6 4353156 4353356 -184926198 - MLT1J LTR MaLR -238 273 67 2204 111 20 0 chr6 4353356 4353662 -184925892 - AluSx SINE Alu 0 312 1 600 274 71 56 chr6 4353662 4353713 -184925841 - MLT1J LTR MaLR -444 67 18 198 277 241 9 chr6 4354179 4354291 -184925263 + MIR3 SINE MIR 19 156 -52 701 271 35 66 chr6 4354378 4354819 -184924735 + LTR35 LTR ERV1 134 556 0 2233 106 0 28 chr6 4355577 4355898 -184923656 - AluSq SINE Alu -1 312 1 280 200 18 0 chr6 4356144 4356199 -184923355 + L2 LINE L2 3257 3312 -1 386 264 157 31 chr6 4356638 4356797 -184922757 - MER5A DNA MER1_type -6 183 5 3659 7 0 3 chr6 4357011 4357554 -184922000 + L1P1 LINE L1 5119 5660 -495 185 74 56 37 chr6 4357558 4357612 -184921942 + A-rich Low_complexity Low_complexity 1 55 0 410 151 0 27 chr6 4358113 4358186 -184921368 - MER20 DNA MER1_type 0 219 149 4831 100 14 5 chr6 4358186 4358824 -184920730 - LTR9B LTR ERV1 0 644 1 3468 128 16 15 chr6 4358837 4359383 -184920171 + LTR10A LTR ERV1 1 547 -62 716 154 0 99 chr6 4359394 4359556 -184919998 - MER20 DNA MER1_type -73 146 1 305 217 85 40 chr6 4361021 4361171 -184918383 + L1ME4a LINE L1 5698 5854 -267 363 276 20 53 chr6 4361209 4361361 -184918193 + L1ME4a LINE L1 5975 6121 0 1099 189 112 18 chr6 4361400 4361897 -184917657 + MLT1E1 LTR MaLR 3 654 0 339 314 69 36 chr6 4362172 4362449 -184917105 + L2 LINE L2 1103 1388 -1926 5188 100 10 13 chr6 4362529 4363222 -184916332 - LTR8 LTR ERV1 0 691 1 1122 265 21 4 chr6 4363380 4363659 -184915895 - MER87 LTR ERV1 -48 493 210 245 292 124 11 chr6 4363731 4363820 -184915734 - LTR8 LTR ERV1 -566 125 27 466 306 165 16 chr6 4363877 4364448 -184915106 + L2 LINE L2 1614 2269 -1045 268 348 24 40 chr6 4364448 4364626 -184914928 + L2 LINE L2 2457 2631 -683 749 202 60 24 chr6 4364626 4364794 -184914760 + MER5B DNA MER1_type 1 174 -4 268 348 24 40 chr6 4364794 4364868 -184914686 + L2 LINE L2 2631 2705 -609 764 219 0 0 chr6 4364876 4364999 -184914555 + FLAM_C SINE Alu 1 123 -10 1223 205 73 14 chr6 4365031 4365319 -184914235 - MLT1A2 LTR MaLR -66 308 4 197 325 93 73 chr6 4365463 4365614 -184913940 + L2 LINE L2 3108 3261 -11 481 285 8 0 chr6 4365835 4365965 -184913589 + MIR SINE MIR 88 218 -44 1060 152 12 0 chr6 4366907 4367071 -184912483 - AluJb SINE Alu -146 166 1 1891 205 21 36 chr6 4367074 4367547 -184912007 - L1 LINE L1 -817 5329 4864 778 185 25 37 chr6 4367550 4367712 -184911842 - MLT1A2 LTR MaLR -214 160 1 776 135 0 0 chr6 4368989 4369100 -184910454 + L1 LINE L1 4864 4974 -1172 545 42 14 0 chr6 4370543 4370615 -184908939 + (GGAA)n Simple_repeat Simple_repeat 2 74 0 468 48 0 0 chr6 4370839 4370902 -184908652 + (CA)n Simple_repeat Simple_repeat 1 63 0 222 261 0 0 chr6 4371369 4371415 -184908139 + (TA)n Simple_repeat Simple_repeat 1 46 0 1360 177 129 33 chr6 4371434 4371768 -184907786 - MLT2D LTR ERVL -48 366 1 2068 111 4 0 chr6 4371908 4372187 -184907367 + AluSx SINE Alu 16 295 -17 273 230 115 35 chr6 4372584 4372671 -184906883 - L2 LINE L2 -8 3305 3212 373 289 39 27 chr6 4372744 4373007 -184906547 + L2 LINE L2 2711 2977 -336 2554 217 60 19 chr6 4373230 4373793 -184905761 - MLT1E LTR MaLR 0 593 8 239 293 135 30 chr6 4374902 4375035 -184904519 + MIR SINE MIR 21 167 -95 3083 145 25 33 chr6 4375127 4375678 -184903876 + LTR10A LTR ERV1 1 547 -62 2065 173 138 50 chr6 4376098 4376600 -184902954 - LTR10B LTR ERV1 -1 546 1 1911 155 54 57 chr6 4376643 4377029 -184902525 - MLT1B LTR MaLR -5 385 1 1678 175 22 0 chr6 4378469 4378743 -184900811 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr6 4378743 4378764 -184900790 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 981 191 5 5 chr6 4378979 4379167 -184900387 - MER53 DNA DNA 0 189 2 263 261 142 30 chr6 4379326 4379460 -184900094 - MLT1L LTR MaLR -49 566 418 2551 69 0 0 chr6 4379858 4380161 -184899393 - AluSc SINE Alu -6 303 1 2483 74 0 16 chr6 4380163 4380472 -184899082 - AluY SINE Alu -7 304 1 22 0 0 0 chr6 4380474 4380496 -184899058 + AT_rich Low_complexity Low_complexity 1 22 0 1631 68 42 13 chr6 4380496 4380732 -184898822 - L1MA1 LINE L1 0 6302 6060 202 309 62 0 chr6 4381617 4381698 -184897856 + MIR SINE MIR 45 130 -78 628 231 158 60 chr6 4381698 4382066 -184897488 - MLT1J LTR MaLR 0 511 108 285 253 13 0 chr6 4382218 4382297 -184897257 - L2 LINE L2 0 3313 3234 2227 101 30 0 chr6 4382549 4382845 -184896709 + AluSc SINE Alu 1 305 -4 610 329 43 37 chr6 4383060 4383434 -184896120 + L1ME4a LINE L1 5518 5893 -228 2167 109 0 0 chr6 4383463 4383738 -184895816 - AluSg SINE Alu -34 276 2 190 286 0 16 chr6 4384368 4384431 -184895123 - L2 LINE L2 -73 3199 3138 1929 159 3 0 chr6 4384661 4384956 -184894598 - AluJo SINE Alu -16 296 1 375 274 149 23 chr6 4385122 4385337 -184894217 - MIR SINE MIR -1 261 20 290 252 19 37 chr6 4385341 4385465 -184894089 - MIR3 SINE MIR -46 162 63 1039 200 33 79 chr6 4385998 4386328 -184893226 + L1MA10 LINE L1 6018 6332 -2 1260 197 24 14 chr6 4386347 4386636 -184892918 + L1MB8 LINE L1 5881 6172 -6 390 274 143 6 chr6 4386683 4386858 -184892696 + MARNA DNA Mariner 211 409 -177 412 264 104 42 chr6 4386987 4387180 -184892374 + MIR SINE MIR 58 262 0 2532 170 25 48 chr6 4388554 4389114 -184890440 - L1MA10 LINE L1 -1 6333 5787 1200 182 18 1 chr6 4389116 4389421 -184890133 - MER2 DNA MER2_type -1 344 1 1207 124 23 0 chr6 4389425 4389602 -184889952 - L1MA10 LINE L1 -552 5782 5602 2322 155 38 5 chr6 4389606 4390032 -184889522 - L1MB3 LINE L1 -2 6181 5742 419 265 8 17 chr6 4390039 4390156 -184889398 + Charlie8 DNA MER1_type 91 206 -2211 306 334 175 16 chr6 4390702 4391010 -184888544 - L3b LINE CR1 -125 1458 1102 504 222 163 7 chr6 4391540 4391693 -184887861 + MER5A DNA MER1_type 13 189 0 366 169 0 0 chr6 4392256 4392315 -184887239 + MER20 DNA MER1_type 159 217 -2 273 61 0 0 chr6 4392362 4392395 -184887159 + MLT1B LTR MaLR 1 33 -357 375 265 48 78 chr6 4392397 4392523 -184887031 + L2 LINE L2 1521 1642 -1672 1059 188 32 37 chr6 4392523 4392741 -184886813 + MER20 DNA MER1_type 1 217 -2 375 265 48 78 chr6 4392741 4392780 -184886774 + L2 LINE L2 1642 1681 -1633 1325 184 126 36 chr6 4392788 4392960 -184886594 + MLT1B LTR MaLR 1 156 -234 189 0 0 0 chr6 4392960 4392981 -184886573 + (TC)n Simple_repeat Simple_repeat 2 22 0 1325 184 126 36 chr6 4392981 4393166 -184886388 + MLT1B LTR MaLR 156 390 0 1469 249 29 31 chr6 4393193 4393249 -184886305 + L1ME1 LINE L1 5742 5797 -369 1870 137 67 25 chr6 4393249 4393607 -184885947 - THE1C LTR MaLR 0 375 3 9616 125 26 38 chr6 4393609 4395204 -184884350 - THE1C-int LTR MaLR 0 1580 4 1603 149 109 34 chr6 4395207 4395556 -184883998 - THE1C LTR MaLR 0 375 1 1469 249 29 31 chr6 4395556 4395913 -184883641 + L1ME1 LINE L1 5800 6161 -5 953 290 172 18 chr6 4395955 4396795 -184882759 + L2 LINE L2 1706 2686 -628 1752 183 93 11 chr6 4396795 4397161 -184882393 + MSTD LTR MaLR 1 396 0 953 290 172 18 chr6 4397161 4397193 -184882361 + L2 LINE L2 2686 2712 -602 2252 95 3 0 chr6 4397514 4397822 -184881732 + AluSq SINE Alu 1 309 0 238 274 59 0 chr6 4399864 4399966 -184879588 + L1ME LINE L1 5692 5799 -363 1200 128 12 0 chr6 4400125 4400297 -184879257 + AluSg/x SINE Alu 139 312 0 283 198 244 0 chr6 4400460 4400546 -184879008 + HsTC2 DNA Tc2 28 134 -1764 * 544 167 49 42 chr6 4400545 4400689 -184878865 + HsTC2 DNA Tc2 1647 1791 -107 474 243 126 14 chr6 4400690 4400955 -184878599 + L2 LINE L2 2702 3006 -307 1114 257 119 48 chr6 4401115 4401745 -184877809 + L1MC4 LINE L1 7367 8041 -1 454 296 21 0 chr6 4403806 4403948 -184875606 + MIR SINE MIR 80 224 -38 491 201 79 126 chr6 4404277 4404491 -184875063 + MIR SINE MIR 51 254 -8 2145 58 91 4 chr6 4405794 4406069 -184873485 - AluY SINE Alu -12 299 1 3427 54 16 16 chr6 4407041 4407485 -184872069 + L1PA8 LINE L1 5726 6169 -3 453 317 0 12 chr6 4407583 4407744 -184871810 - MIR SINE MIR -6 256 98 288 304 53 70 chr6 4408937 4409108 -184870446 - MER5B DNA MER1_type -7 171 4 395 233 0 0 chr6 4409585 4409658 -184869896 + Tigger3(Golem) DNA MER2_type 3 75 -2954 611 196 0 0 chr6 4409658 4409765 -184869789 - FLAM_C SINE Alu -35 108 2 475 217 57 23 chr6 4409767 4409942 -184869612 + L1ME1 LINE L1 4279 4459 -1687 * 1391 226 72 24 chr6 4409928 4410074 -184869480 + L1ME1 LINE L1 5643 5781 -385 2236 150 25 34 chr6 4410074 4410481 -184869073 - MER57A LTR ERV1 0 403 1 1391 226 72 24 chr6 4410481 4410749 -184868805 + L1ME1 LINE L1 5781 6077 -89 1518 201 43 23 chr6 4410781 4411179 -184868375 + MER97b DNA MER1_type? 454 859 -194 379 185 46 28 chr6 4411411 4411519 -184868035 + L1 LINE L1 4884 4993 -1153 363 269 36 16 chr6 4411546 4411726 -184867828 + L1M4b LINE L1 24 487 -6368 230 217 14 14 chr6 4411831 4411900 -184867654 + (TA)n Simple_repeat Simple_repeat 1 69 0 2028 157 26 103 chr6 4411900 4412128 -184867426 + Tigger2a DNA MER2_type 1 176 -2532 2044 123 4 0 chr6 4412128 4412405 -184867149 - AluSx SINE Alu -30 282 5 2028 157 26 103 chr6 4412405 4412641 -184866913 + Tigger2a DNA MER2_type 176 429 -5 797 181 6 19 chr6 4412865 4413025 -184866529 + L1MB7 LINE L1 15 172 -6370 * 13965 153 38 10 chr6 4413018 4415284 -184864270 + L1M1 LINE L1 1361 3752 -3813 1782 152 0 4 chr6 4415284 4415568 -184863986 + AluSx SINE Alu 28 310 0 13965 153 38 10 chr6 4415568 4416679 -184862875 + L1M1 LINE L1 3752 4831 -2734 1280 158 27 97 chr6 4416676 4416917 -184862637 + L1MB7 LINE L1 901 1114 -5428 * 2369 84 3 0 chr6 4416917 4417213 -184862341 - AluY SINE Alu -14 297 1 1280 158 27 97 chr6 4417213 4417300 -184862254 + L1MB7 LINE L1 1114 1206 -5336 2008 204 42 8 chr6 4418529 4419005 -184860549 + L1MB7 LINE L1 1188 1679 -4863 3464 199 60 12 chr6 4419019 4419802 -184859752 - MER21B LTR ERV1 0 863 2 1441 235 48 29 chr6 4419803 4420279 -184859275 + L1MB7 LINE L1 1685 2169 -4477 1246 276 10 17 chr6 4420667 4421149 -184858405 + L1MB7 LINE L1 2268 2746 -3900 5723 127 41 7 chr6 4421149 4422266 -184857288 + L1PB3 LINE L1 5006 6154 0 1633 158 18 40 chr6 4422281 4422559 -184856995 + AluSx SINE Alu 1 272 -40 221 0 0 33 chr6 4422575 4422605 -184856949 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 585 211 62 23 chr6 4422756 4422884 -184856670 + AluJo SINE Alu 3 135 -177 9434 199 52 32 chr6 4422898 4424420 -184855134 + L1MB7 LINE L1 2732 4222 -2460 203 61 30 0 chr6 4424420 4424453 -184855101 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1662 189 4 0 chr6 4424455 4424735 -184854819 - AluJb SINE Alu -31 281 1 9434 199 52 32 chr6 4424735 4425125 -184854429 + L1MB7 LINE L1 4222 4603 -2079 237 65 0 0 chr6 4425125 4425156 -184854398 + (CA)n Simple_repeat Simple_repeat 2 32 0 9434 199 52 32 chr6 4425156 4426885 -184852669 + L1MB7 LINE L1 4603 6545 -137 621 72 0 0 chr6 4426885 4426968 -184852586 + (TG)n Simple_repeat Simple_repeat 1 83 0 9434 199 52 32 chr6 4426968 4427090 -184852464 + L1MB7 LINE L1 6545 6663 -19 4462 226 42 46 chr6 4427308 4428069 -184851485 + L1MD3 LINE L1 3239 4001 -2145 186 43 0 0 chr6 4428069 4428092 -184851462 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2264 110 0 0 chr6 4428092 4428391 -184851163 - AluSx SINE Alu -13 299 1 4462 226 42 46 chr6 4428391 4428695 -184850859 + L1MD3 LINE L1 4000 4304 -1842 2453 146 50 8 chr6 4428695 4429073 -184850481 + MSTD LTR MaLR 1 394 -2 4462 226 42 46 chr6 4429073 4429380 -184850174 + L1MD3 LINE L1 4304 4608 -1538 6171 155 45 8 chr6 4429386 4431216 -184848338 + L1MA8 LINE L1 4287 6290 -1 2458 211 47 77 chr6 4431220 4432080 -184847474 + L1MD3 LINE L1 4610 5439 -727 293 210 200 10 chr6 4432084 4432184 -184847370 + FLAM_A SINE Alu 6 124 -9 3200 245 117 29 chr6 4432186 4433451 -184846103 + L1MD3 LINE L1 5435 6811 -1184 769 235 107 38 chr6 4433461 4433750 -184845804 + L2 LINE L2 3005 3313 0 758 242 82 6 chr6 4433904 4434086 -184845468 - MER91A DNA MER1_type 0 196 1 4235 152 31 11 chr6 4435316 4436060 -184843494 + L1MB3 LINE L1 5289 6047 -136 665 292 79 46 chr6 4436060 4436491 -184843063 + L1ME4a LINE L1 5526 5970 -151 233 221 58 0 chr6 4436504 4436590 -184842964 + L1ME4a LINE L1 6031 6121 0 6121 66 15 4 chr6 4437044 4437800 -184841754 + L1PA7 LINE L1 5383 6146 -8 186 71 0 0 chr6 4437805 4437833 -184841721 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 333 157 49 10 chr6 4437898 4438000 -184841554 + CT-rich Low_complexity Low_complexity 1 106 0 769 307 66 0 chr6 4438942 4439183 -184840371 + MIR SINE MIR 1 257 -5 1193 118 6 0 chr6 4439202 4439363 -184840191 + AluSx SINE Alu 1 162 -150 225 325 79 0 chr6 4440821 4440935 -184838619 + L2 LINE L2 2916 3038 -234 343 307 62 20 chr6 4441025 4441183 -184838371 + MIR SINE MIR 30 191 -66 230 283 97 21 chr6 4441392 4441537 -184838017 - MER5B DNA MER1_type -2 176 21 204 229 33 33 chr6 4441557 4441618 -184837936 + CT-rich Low_complexity Low_complexity 6 66 0 240 289 29 29 chr6 4442242 4442346 -184837208 + L2 LINE L2 2935 3038 -234 2013 108 52 3 chr6 4444091 4444377 -184835177 + AluSx SINE Alu 1 300 -12 199 154 0 26 chr6 4444966 4445005 -184834549 - L2 LINE L2 -79 3234 3197 792 128 21 14 chr6 4445255 4445396 -184834158 + L1MA8 LINE L1 6146 6287 -4 1780 130 19 52 chr6 4445404 4445711 -184833843 + AluSx SINE Alu 1 297 -15 1653 76 23 2 chr6 4446291 4446670 -184832884 - MLT2A2 LTR ERVL 0 453 1 350 254 0 18 chr6 4448005 4448170 -184831384 + (GTATG)n Simple_repeat Simple_repeat 3 164 0 432 239 150 60 chr6 4448369 4448536 -184831018 - MIR SINE MIR -31 231 50 450 311 0 16 chr6 4449265 4449448 -184830106 + (CA)n Simple_repeat Simple_repeat 1 180 0 275 275 0 13 chr6 4449641 4449790 -184829764 + (GTATG)n Simple_repeat Simple_repeat 1 147 0 267 294 0 0 chr6 4450899 4450967 -184828587 + (GCATG)n Simple_repeat Simple_repeat 5 72 0 346 218 141 54 chr6 4451212 4451407 -184828147 - MIR SINE MIR -29 233 16 716 262 83 78 chr6 4451673 4452081 -184827473 - MLT1J LTR MaLR -78 433 24 2561 120 10 10 chr6 4452555 4452939 -184826615 + MLT1B LTR MaLR 7 390 0 1506 160 94 0 chr6 4454098 4454354 -184825200 + AluJo SINE Alu 1 280 -32 2059 117 7 3 chr6 4454394 4454692 -184824862 + AluSc SINE Alu 1 299 -10 219 333 167 0 chr6 4455147 4455267 -184824287 + MIR3 SINE MIR 51 190 -18 1027 238 19 0 chr6 4456141 4456347 -184823207 - MER63A DNA MER1_type 0 210 1 184 267 0 0 chr6 4457283 4457328 -184822226 + L2 LINE L2 3269 3313 0 32 0 0 0 chr6 4458818 4458850 -184820704 + AT_rich Low_complexity Low_complexity 1 32 0 250 256 168 57 chr6 4459229 4459526 -184820028 - L1MEd LINE L1 -3222 2907 2578 317 274 79 66 chr6 4459563 4459671 -184819883 - L1MEd LINE L1 -3636 2493 2388 2143 129 3 0 chr6 4459671 4459980 -184819574 - AluSx SINE Alu -2 310 1 317 274 79 66 chr6 4459980 4460174 -184819380 - L1MEd LINE L1 -3741 2388 2187 1964 141 30 3 chr6 4460188 4460492 -184819062 + AluJb SINE Alu 1 312 0 514 295 76 55 chr6 4461033 4461491 -184818063 - HAL1 LINE L1 -742 1765 1298 288 171 0 0 chr6 4461500 4461541 -184818013 - Tigger5 DNA MER2_type 0 2323 2283 256 233 0 0 chr6 4461549 4461592 -184817962 + Tigger5 DNA MER2_type 2278 2320 -3 * 326 247 0 27 chr6 4461592 4461661 -184817893 - Tigger5 DNA MER2_type -2256 67 1 357 300 66 37 chr6 4461702 4461945 -184817609 - L1MEd LINE L1 -4975 1144 895 1764 136 0 8 chr6 4462131 4462388 -184817166 + AluSx SINE Alu 43 297 -15 3053 25 3 0 chr6 4462388 4462745 -184816809 - L1PA3 LINE L1 -1005 5141 4784 8294 22 0 0 chr6 4462745 4463817 -184815737 + L1PA3 LINE L1 5141 6209 0 333 157 49 10 chr6 4463853 4463955 -184815599 + CT-rich Low_complexity Low_complexity 1 106 0 807 299 66 0 chr6 4464897 4465138 -184814416 + MIR SINE MIR 1 257 -5 1769 154 4 7 chr6 4465157 4465436 -184814118 + AluJb SINE Alu 1 278 -34 446 0 19 0 chr6 4465439 4465493 -184814061 + (TTAAA)n Simple_repeat Simple_repeat 1 55 0 185 274 171 77 chr6 4465518 4466125 -184813429 + L2 LINE L2 2167 2830 -484 395 328 100 45 chr6 4466152 4466463 -184813091 + L2 LINE L2 2922 3249 -23 506 262 56 76 chr6 4466687 4466863 -184812691 + L1MC/D LINE L1 5196 5374 -1024 1629 185 3 27 chr6 4466863 4467160 -184812394 - AluJb SINE Alu -22 290 1 506 262 56 76 chr6 4467160 4467427 -184812127 + L1MC/D LINE L1 5374 5622 -776 402 255 80 92 chr6 4467738 4467989 -184811565 + MLT1L LTR MaLR 10 257 -358 2839 218 174 55 chr6 4468040 4468986 -184810568 + L1MC4a LINE L1 6442 7500 -308 2162 121 0 0 chr6 4469040 4469348 -184810206 + AluSx SINE Alu 1 308 0 374 280 9 9 chr6 4469380 4469487 -184810067 + L1MC4 LINE L1 7795 7901 -141 234 180 0 66 chr6 4469488 4469549 -184810005 + L1MC4 LINE L1 7986 8042 0 286 279 240 6 chr6 4469725 4469904 -184809650 + MLT1L LTR MaLR 395 615 0 2815 19 0 6 chr6 4470007 4470323 -184809231 + AluYb8 SINE Alu 1 314 -4 528 209 34 155 chr6 4470787 4470823 -184808731 + L1MC4 LINE L1 6509 6548 -1494 2148 93 0 10 chr6 4470823 4471114 -184808440 + AluSx SINE Alu 1 288 -24 528 209 34 155 chr6 4471114 4471374 -184808180 + L1MC4 LINE L1 6548 6769 -1273 299 284 101 47 chr6 4471680 4471828 -184807726 + L2 LINE L2 3109 3264 -8 633 192 0 48 chr6 4472461 4472586 -184806968 - MLT1E2 LTR MaLR -3 623 505 1434 164 34 74 chr6 4472586 4472681 -184806873 - AluJo SINE Alu 0 312 215 4610 104 30 47 chr6 4472681 4473384 -184806170 + LTR8 LTR ERV1 1 691 0 1434 164 34 74 chr6 4473384 4473611 -184805943 - AluJo SINE Alu -97 215 3 1593 240 109 27 chr6 4473613 4474088 -184805466 - MLT1E2 LTR MaLR -112 514 1 791 189 0 0 chr6 4474406 4474538 -184805016 + FLAM_C SINE Alu 2 133 0 237 247 148 0 chr6 4475019 4475100 -184804454 - L2 LINE L2 -36 3277 3185 1811 179 43 93 chr6 4476382 4476867 -184802687 - MLT2C2 LTR ERVL -3 461 1 389 294 62 20 chr6 4478160 4478306 -184801248 - L2 LINE L2 0 3272 3121 369 62 0 0 chr6 4478318 4478366 -184801188 + (ATG)n Simple_repeat Simple_repeat 3 50 0 736 207 0 0 chr6 4480541 4480676 -184798878 + FLAM_C SINE Alu 2 136 -7 573 306 120 0 chr6 4480690 4480906 -184798648 + MIR SINE MIR 20 261 -1 507 270 199 5 chr6 4482320 4482516 -184797038 + MIR SINE MIR 2 235 -27 * 788 226 37 26 chr6 4482514 4482704 -184796850 + MIR SINE MIR 68 259 -3 321 179 0 0 chr6 4482709 4482793 -184796761 + (ATG)n Simple_repeat Simple_repeat 1 84 0 1190 213 49 4 chr6 4482814 4483058 -184796496 - LTR8 LTR ERV1 -436 255 1 377 216 14 0 chr6 4483060 4483134 -184796420 + MER5A DNA MER1_type 16 90 -99 854 251 117 42 chr6 4484255 4484657 -184794897 - L1ME3A LINE L1 -130 6032 5601 5618 101 15 16 chr6 4484664 4485327 -184794227 - L1PB1 LINE L1 0 6151 5488 1854 129 3 24 chr6 4485327 4485646 -184793908 - AluSx SINE Alu 0 312 1 5618 101 15 16 chr6 4485646 4485842 -184793712 - L1PB1 LINE L1 -663 5488 5293 1936 67 0 0 chr6 4485855 4486093 -184793461 - LTR17 LTR ERV1 -454 326 89 8257 197 13 38 chr6 4486095 4487923 -184791631 - L1PB1 LINE L1 -852 5294 3516 2248 93 0 0 chr6 4487923 4488223 -184791331 - AluY SINE Alu -11 300 1 8257 197 13 38 chr6 4488223 4488347 -184791207 - L1PB1 LINE L1 -2630 3516 3390 580 268 46 15 chr6 4488459 4488782 -184790772 - L1ME3A LINE L1 -641 5525 5195 2146 111 0 7 chr6 4489482 4489788 -184789766 - AluSx SINE Alu -8 304 1 3041 159 46 9 chr6 4489792 4490376 -184789178 - L1MB3 LINE L1 -1 6182 5577 501 286 12 42 chr6 4490488 4490656 -184788898 - MIR3 SINE MIR 0 208 46 333 0 0 0 chr6 4491054 4491091 -184788463 + (CA)n Simple_repeat Simple_repeat 2 38 0 205 184 26 0 chr6 4491765 4491803 -184787751 + MIR SINE MIR 108 146 -62 359 320 153 0 chr6 4492726 4492876 -184786678 - MER5B DNA MER1_type -5 173 1 249 243 49 53 chr6 4493247 4493418 -184786136 - MIR SINE MIR -50 212 43 438 209 12 0 chr6 4493532 4493618 -184785936 - MER81 DNA DNA -8 106 20 296 188 29 14 chr6 4494044 4494113 -184785441 - Charlie4a DNA MER1_type 0 508 439 1783 183 7 0 chr6 4494113 4494525 -184785029 - AluJb SINE Alu 0 414 1 1533 204 90 0 chr6 4494566 4494910 -184784644 - Charlie4a DNA MER1_type -133 375 1 1595 244 40 14 chr6 4495036 4495478 -184784076 + MLT1C LTR MaLR 1 654 0 214 297 48 69 chr6 4495810 4495955 -184783599 - MIR3 SINE MIR -7 201 60 277 233 78 33 chr6 4496367 4496457 -184783097 - LTR16A1 LTR ERVL -30 427 334 303 274 0 0 chr6 4496563 4496636 -184782918 - MER63 DNA MER1_type -11 1050 978 458 147 0 40 chr6 4496638 4496713 -184782841 - MER63 DNA MER1_type -312 749 678 259 288 0 0 chr6 4497788 4497868 -184781686 + MER116 DNA Mariner 1 80 0 300 330 93 8 chr6 4498007 4498125 -184781429 + MIR3 SINE MIR 12 139 -69 1102 152 39 30 chr6 4499288 4499506 -184780048 + L1MB3 LINE L1 5854 6100 -71 1500 202 3 3 chr6 4499506 4499798 -184779756 + AluJo SINE Alu 6 297 -15 1102 152 39 30 chr6 4499798 4499869 -184779685 + L1MB3 LINE L1 6100 6169 -2 265 367 101 0 chr6 4501443 4501552 -184778002 + L2 LINE L2 3152 3271 -1 306 0 0 0 chr6 4502070 4502104 -184777450 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 56 0 0 chr6 4502223 4502313 -184777241 + Alu SINE Alu 221 310 0 678 244 130 28 chr6 4503829 4504153 -184775401 + LTR33A LTR ERVL 159 515 -8 525 178 0 0 chr6 4504410 4504500 -184775054 - LTR12 LTR ERV1 0 714 625 306 185 29 27 chr6 4504500 4504602 -184774952 - LTR30 LTR ERV1 -92 614 378 273 145 0 65 chr6 4504602 4504664 -184774890 - LTR12 LTR ERV1 -429 285 228 970 162 96 21 chr6 4504721 4504944 -184774610 - LTR12 LTR ERV1 -480 1683 55 274 231 0 0 chr6 4504944 4504996 -184774558 - LTR30 LTR ERV1 -670 52 1 2226 106 0 0 chr6 4505563 4505864 -184773690 - AluSq SINE Alu -12 301 1 347 141 31 0 chr6 4506164 4506228 -184773326 + Alu SINE Alu 235 300 -2 2503 154 55 20 chr6 4506355 4506795 -184772759 - MLT1C LTR MaLR 0 467 13 1677 208 28 48 chr6 4506813 4507207 -184772347 - MLT1C-int LTR MaLR -14 1357 972 2321 108 95 63 chr6 4507732 4508195 -184771359 + L1MA7 LINE L1 5813 6290 -1 1485 159 116 0 chr6 4508205 4508463 -184771091 + AluJb SINE Alu 1 288 -24 344 327 68 19 chr6 4508682 4508844 -184770710 + MER5A DNA MER1_type 20 189 0 495 291 60 39 chr6 4508849 4509031 -184770523 + MIR SINE MIR 18 203 -59 317 299 37 9 chr6 4509158 4509265 -184770289 + MIR SINE MIR 153 262 0 2128 97 10 3 chr6 4509637 4509935 -184769619 + AluSc SINE Alu 1 300 -9 1968 184 91 30 chr6 4510485 4510947 -184768607 - LTR2B LTR ERV1 0 490 1 264 407 42 0 chr6 4510999 4511117 -184768437 - L2 LINE L2 -27 3245 3123 299 231 51 0 chr6 4511168 4511246 -184768308 + MER58B DNA MER1_type 252 333 -8 756 157 100 7 chr6 4511481 4511621 -184767933 - LTR32 LTR ERVL 0 471 319 1972 181 29 14 chr6 4511623 4511972 -184767582 - LTR32 LTR ERVL -103 368 15 1580 190 74 3 chr6 4511972 4512336 -184767218 + L1MB2 LINE L1 5782 6171 0 873 330 14 17 chr6 4512665 4513011 -184766543 + L2 LINE L2 1973 2317 -997 937 283 118 53 chr6 4513028 4513477 -184766077 - MLT1J LTR MaLR -33 478 1 455 333 85 28 chr6 4513477 4513795 -184765759 + L2 LINE L2 2315 2650 -664 398 287 102 56 chr6 4513801 4514058 -184765496 + L2 LINE L2 2473 2717 -555 1922 142 3 0 chr6 4514058 4514361 -184765193 + AluSx SINE Alu 1 304 -8 398 287 102 56 chr6 4514361 4514655 -184764899 + L2 LINE L2 2717 3091 -181 230 250 52 73 chr6 4514802 4514898 -184764656 + L2 LINE L2 3220 3313 0 713 138 7 51 chr6 4516382 4516520 -184763034 - FRAM SINE Alu -4 172 41 548 285 108 25 chr6 4516830 4517107 -184762447 + L1MC4a LINE L1 5569 5868 -1940 875 123 23 0 chr6 4517126 4517256 -184762298 - FLAM_C SINE Alu 0 133 1 1219 202 96 58 chr6 4517335 4518024 -184761530 - L1ME1 LINE L1 -9 6157 5496 2148 123 0 0 chr6 4518024 4518333 -184761221 - AluSg SINE Alu -1 309 1 2034 121 0 25 chr6 4518333 4518648 -184760906 - AluSx SINE Alu -4 308 2 1219 202 96 58 chr6 4518648 4518727 -184760827 - L1ME1 LINE L1 -670 5496 5421 1742 176 0 0 chr6 4518727 4519028 -184760526 - AluSx SINE Alu -11 301 1 1219 202 96 58 chr6 4519028 4519356 -184760198 - L1ME1 LINE L1 -745 5421 4853 844 171 41 59 chr6 4519744 4519864 -184759690 - AluJo SINE Alu -12 300 182 4971 71 3 2 chr6 4519864 4520496 -184759058 - LTR10E LTR ERV1 0 633 1 844 171 41 59 chr6 4520496 4520545 -184759009 - AluJo SINE Alu -130 182 134 852 150 0 0 chr6 4520545 4520678 -184758876 - AluJo SINE Alu -169 133 1 861 246 42 17 chr6 4521473 4521709 -184757845 - MIR SINE MIR -3 259 18 2148 107 0 57 chr6 4521811 4522128 -184757426 - AluSx SINE Alu -13 299 1 265 376 6 25 chr6 4522365 4522527 -184757027 + MIR SINE MIR 75 233 -29 400 263 105 70 chr6 4522618 4522935 -184756619 + L1MC4a LINE L1 4755 5095 -1051 1941 102 45 0 chr6 4522935 4523225 -184756329 + AluSx SINE Alu 7 308 0 400 263 105 70 chr6 4523225 4523362 -184756192 + L1MC4a LINE L1 5095 5226 -920 374 242 89 8 chr6 4523408 4523532 -184756022 - L2 LINE L2 0 3313 3180 1878 132 11 0 chr6 4523716 4523981 -184755573 + AluSx SINE Alu 7 274 -38 21 0 0 0 chr6 4523988 4524009 -184755545 + AT_rich Low_complexity Low_complexity 1 21 0 1496 183 11 21 chr6 4524080 4524364 -184755190 + AluJo SINE Alu 1 281 -31 2603 74 0 0 chr6 4524376 4524687 -184754867 - AluY SINE Alu 0 311 1 936 304 41 39 chr6 4524707 4525147 -184754407 + L1MC4a LINE L1 5466 5906 -1902 503 216 122 0 chr6 4525147 4525295 -184754259 + MER63C DNA MER1_type 1 166 -764 482 224 46 33 chr6 4525396 4525548 -184754006 - MER63C DNA MER1_type -533 397 244 * 1448 188 20 14 chr6 4525432 4525708 -184753846 + MER63C DNA MER1_type 244 521 -409 1068 213 62 0 chr6 4525708 4525919 -184753635 + MER58A DNA MER1_type 1 224 0 1633 230 65 0 chr6 4525919 4526301 -184753253 + MER63C DNA MER1_type 519 925 -5 271 285 98 16 chr6 4527150 4527273 -184752281 - LTR16C LTR ERVL 0 491 359 1060 212 205 40 chr6 4527292 4527716 -184751838 - MLT1G LTR MaLR 0 590 97 1193 178 57 13 chr6 4527808 4528038 -184751516 - MLT1F1 LTR MaLR -299 268 29 204 40 0 0 chr6 4528055 4528080 -184751474 + (TG)n Simple_repeat Simple_repeat 2 26 0 1100 264 190 26 chr6 4528100 4528197 -184751357 - L1ME3A LINE L1 -232 5938 5858 2516 123 21 3 chr6 4528197 4528580 -184750974 - MLT1B LTR MaLR 0 390 1 1100 264 190 26 chr6 4528580 4529064 -184750490 - L1ME3A LINE L1 -312 5858 5265 2247 124 0 0 chr6 4529303 4529602 -184749952 + AluSx SINE Alu 1 299 -13 975 161 37 0 chr6 4530669 4530831 -184748723 - MER20 DNA MER1_type 0 219 52 2538 162 5 0 chr6 4530887 4531288 -184748266 - MER57A LTR ERV1 0 403 1 15608 124 30 3 chr6 4531343 4533693 -184745861 - Tigger1 DNA MER2_type 0 2418 5 347 200 122 0 chr6 4533748 4533838 -184745716 + U13 snRNA snRNA 1 101 -3 1766 88 0 0 chr6 4534428 4534644 -184744910 + AluSg/x SINE Alu 87 302 -8 205 285 49 57 chr6 4535918 4536041 -184743513 + MER5B DNA MER1_type 2 123 -55 180 212 0 0 chr6 4536396 4536429 -184743125 + L2 LINE L2 3230 3262 -10 2406 95 0 0 chr6 4536448 4536744 -184742810 - AluSg SINE Alu -14 296 1 1990 118 0 24 chr6 4536982 4537270 -184742284 + AluSx SINE Alu 22 302 -10 252 232 85 67 chr6 4538391 4538555 -184740999 - L1ME4a LINE L1 -2 6119 5953 524 229 97 0 chr6 4538833 4539008 -184740546 - MIR SINE MIR 0 262 71 538 281 113 30 chr6 4539621 4540027 -184739527 - HAL1 LINE L1 0 2507 2068 * 6821 223 69 24 chr6 4540022 4542650 -184736904 + L1ME1 LINE L1 3153 5901 -265 1693 154 78 7 chr6 4542659 4542965 -184736589 + MER2 DNA MER2_type 17 344 -1 713 247 5 73 chr6 4542969 4543170 -184736384 + L1ME1 LINE L1 5905 6091 -75 941 220 18 23 chr6 4543170 4543388 -184736166 - MER20 DNA MER1_type -1 218 2 713 247 5 73 chr6 4543388 4543405 -184736149 + L1ME1 LINE L1 6091 6108 -58 596 177 21 0 chr6 4543409 4543505 -184736049 + AluJ/FLAM SINE Alu 3 100 -212 39 50 0 0 chr6 4543505 4543565 -184735989 + AT_rich Low_complexity Low_complexity 1 60 0 1712 158 21 7 chr6 4543565 4543849 -184735705 - AluJb SINE Alu -24 288 1 2148 124 3 7 chr6 4543886 4544185 -184735369 + AluSx SINE Alu 1 298 -14 684 293 226 44 chr6 4544383 4545315 -184734239 - HAL1 LINE L1 -931 1576 475 204 125 42 42 chr6 4546501 4546573 -184732981 + (TAA)n Simple_repeat Simple_repeat 1 72 0 1894 261 92 53 chr6 4546623 4546845 -184732709 + L1M4 LINE L1 2210 2422 -3724 2085 121 14 3 chr6 4546845 4547134 -184732420 + AluSx SINE Alu 1 292 -20 1894 261 92 53 chr6 4547134 4548291 -184731263 + L1M4 LINE L1 2422 3643 -2503 1027 236 159 26 chr6 4548313 4549042 -184730512 - L2 LINE L2 -73 3240 2410 234 215 15 15 chr6 4549061 4549126 -184730428 + GA-rich Low_complexity Low_complexity 2 66 0 4295 27 0 0 chr6 4549338 4549827 -184729727 - L1PA4 LINE L1 -4 6151 5663 838 108 58 0 chr6 4549833 4549953 -184729601 - FLAM_C SINE Alu -10 133 7 361 268 49 0 chr6 4550042 4550165 -184729389 - MIR3 SINE MIR -69 139 11 1317 153 77 32 chr6 4551787 4552035 -184727519 + AluJo SINE Alu 39 297 -15 1576 134 0 17 chr6 4552095 4552326 -184727228 + AluJb SINE Alu 17 243 -69 270 81 0 0 chr6 4552337 4552374 -184727180 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 1005 163 0 0 chr6 4553854 4554007 -184725547 + FRAM SINE Alu 1 153 -13 671 221 21 106 chr6 4554182 4554513 -184725041 + MLT1J1 LTR MaLR 35 337 -109 294 293 125 66 chr6 4555992 4556416 -184723138 - MLT1K LTR MaLR 0 588 140 2051 141 0 51 chr6 4556979 4557334 -184722220 + MER1B DNA MER1_type 1 337 0 2074 149 74 3 chr6 4557403 4557766 -184721788 + MLT1B LTR MaLR 1 389 -1 209 304 67 38 chr6 4559195 4559307 -184720247 + MIR SINE MIR 7 122 -86 473 232 134 73 chr6 4559357 4559472 -184720082 + MIR SINE MIR 2 109 -153 2422 69 3 7 chr6 4559472 4559778 -184719776 - AluY SINE Alu -6 305 1 473 232 134 73 chr6 4559778 4559908 -184719646 + MIR SINE MIR 109 262 0 260 320 8 25 chr6 4559982 4560104 -184719450 - MLT1K LTR MaLR 0 588 469 198 171 0 0 chr6 4560419 4560460 -184719094 + (CA)n Simple_repeat Simple_repeat 2 42 0 259 225 45 0 chr6 4561051 4561140 -184718414 + MIR SINE MIR 93 185 -77 2025 127 13 30 chr6 4561198 4561497 -184718057 + AluSx SINE Alu 1 294 -18 643 205 66 0 chr6 4561685 4561851 -184717703 - MIR SINE MIR -57 205 29 274 267 12 12 chr6 4563205 4563291 -184716263 + GA-rich Low_complexity Low_complexity 2 87 0 490 286 105 33 chr6 4563761 4564037 -184715517 - LTR16B LTR ERVL 0 464 169 320 266 115 9 chr6 4564837 4564950 -184714604 + MER96 DNA MER1_type? 1 125 -50 206 205 0 0 chr6 4565916 4565955 -184713599 + G-rich Low_complexity Low_complexity 1 39 0 476 263 21 21 chr6 4566014 4566200 -184713354 - MER5A DNA MER1_type -3 186 1 469 299 91 15 chr6 4566431 4566628 -184712926 + MIR SINE MIR 48 259 -3 704 258 154 75 chr6 4566653 4566724 -184712830 - MLT1F1 LTR MaLR 0 590 526 1720 174 7 17 chr6 4566724 4567022 -184712532 + AluJo SINE Alu 6 300 -12 704 258 154 75 chr6 4567022 4567497 -184712057 - MLT1F1 LTR MaLR -64 526 1 1106 138 39 86 chr6 4568114 4568346 -184711208 - AluJo SINE Alu -7 305 85 1826 155 32 45 chr6 4568542 4568922 -184710632 + THE1C LTR MaLR 1 375 0 1028 203 33 5 chr6 4569336 4569548 -184710006 + MER20 DNA MER1_type 1 218 -1 2200 101 0 3 chr6 4570217 4570503 -184709051 - AluSx SINE Alu -27 285 1 453 228 82 78 chr6 4570726 4570932 -184708622 - L1MC5 LINE L1 -74 7887 7681 2199 120 0 0 chr6 4570933 4571232 -184708322 + AluSx SINE Alu 1 299 -13 290 339 51 8 chr6 4572266 4572384 -184707170 + MIR SINE MIR 79 201 -61 * 444 311 179 16 chr6 4572382 4572745 -184706809 - L2 LINE L2 0 3313 2892 2202 125 110 15 chr6 4572776 4573167 -184706387 + MSTA LTR MaLR 1 428 0 1200 319 76 17 chr6 4573263 4573905 -184705649 - L2 LINE L2 -616 2698 2019 675 142 0 0 chr6 4573905 4574025 -184705529 + (GAATG)n Simple_repeat Simple_repeat 3 122 0 424 306 188 3 chr6 4574030 4574366 -184705188 - L2 LINE L2 -1304 2010 1613 301 242 57 16 chr6 4574983 4575107 -184704447 - HAL1b LINE L1 -7 1341 1213 382 164 0 0 chr6 4575504 4575559 -184703995 + AluJ/FLAM SINE Alu 19 73 -229 820 29 29 0 chr6 4575559 4575663 -184703891 - L1PA7 LINE L1 -100 6054 5948 1622 243 102 67 chr6 4575670 4575699 -184703855 + HAL1 LINE L1 114 141 -2366 2195 122 3 0 chr6 4575699 4575993 -184703561 - AluSx SINE Alu -17 295 1 1622 243 102 67 chr6 4575993 4576528 -184703026 + HAL1 LINE L1 141 656 -1851 1590 201 7 13 chr6 4576528 4576827 -184702727 + AluJo SINE Alu 1 297 -15 2241 99 0 43 chr6 4576829 4577153 -184702401 + AluSg SINE Alu 1 310 0 1622 243 102 67 chr6 4577153 4577320 -184702234 + HAL1 LINE L1 656 875 -1632 384 231 93 9 chr6 4577320 4577428 -184702126 + HsTC2 DNA Tc2 1 117 -1781 260 159 45 0 chr6 4577446 4577490 -184702064 + HsTC2 DNA Tc2 1245 1290 -608 1300 239 267 33 chr6 4577515 4578813 -184700741 + HAL1 LINE L1 874 2507 0 383 168 8 143 chr6 4578890 4579009 -184700545 - MER2 DNA MER2_type -1 344 242 1649 128 42 19 chr6 4579011 4579276 -184700278 + AluSx SINE Alu 35 305 -7 291 122 0 0 chr6 4579494 4579535 -184700019 - MSTA LTR MaLR 0 428 388 2296 104 3 0 chr6 4579535 4579834 -184699720 + AluSx SINE Alu 1 300 -12 27 29 0 0 chr6 4580005 4580039 -184699515 + AT_rich Low_complexity Low_complexity 1 34 0 236 299 0 0 chr6 4580973 4581040 -184698514 + (CTTA)n Simple_repeat Simple_repeat 3 69 0 21 0 0 0 chr6 4581352 4581373 -184698181 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr6 4583727 4583761 -184695793 + AT_rich Low_complexity Low_complexity 1 34 0 24 32 0 0 chr6 4584843 4584874 -184694680 + AT_rich Low_complexity Low_complexity 1 31 0 227 79 26 0 chr6 4584877 4584915 -184694639 + (TA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr6 4585950 4585972 -184693582 + (A)n Simple_repeat Simple_repeat 1 22 0 2035 139 0 16 chr6 4585992 4586302 -184693252 - AluSx SINE Alu -7 305 1 1844 114 158 24 chr6 4586303 4586644 -184692910 - MSTA LTR MaLR -40 388 2 218 324 88 0 chr6 4586736 4586906 -184692648 + L2 LINE L2 1859 2043 -1271 1979 182 14 0 chr6 4587096 4587453 -184692101 - L1PB4 LINE L1 -1 6155 5794 284 271 42 42 chr6 4587654 4587798 -184691756 + L2 LINE L2 3084 3227 -86 418 297 156 52 chr6 4587884 4588355 -184691199 + HAL1 LINE L1 882 1303 -1204 2236 117 0 0 chr6 4588355 4588653 -184690901 + AluSg SINE Alu 1 298 -12 418 297 156 52 chr6 4588653 4589104 -184690450 + HAL1 LINE L1 1303 1900 -607 479 181 85 11 chr6 4589192 4589286 -184690268 + AluJo SINE Alu 117 217 -95 243 338 68 7 chr6 4589533 4589681 -184689873 + HAL1b LINE L1 749 905 -443 315 324 34 34 chr6 4589778 4589954 -184689600 + HAL1 LINE L1 2226 2401 -106 1933 120 40 36 chr6 4589993 4590159 -184689395 - AluSx SINE Alu -10 302 133 2502 82 0 0 chr6 4590159 4590463 -184689091 - AluY SINE Alu -7 304 1 1933 120 40 36 chr6 4590463 4590597 -184688957 - AluSx SINE Alu -179 133 1 194 318 14 74 chr6 4591091 4591239 -184688315 - MIR SINE MIR -72 190 52 1472 131 25 4 chr6 4591313 4591557 -184687997 + L1MA9 LINE L1 5357 5605 -707 2241 92 3 55 chr6 4591561 4591887 -184687667 + AluSp SINE Alu 1 309 -4 2452 97 0 0 chr6 4591890 4592200 -184687354 + AluSg SINE Alu 1 310 0 1394 118 15 0 chr6 4592204 4592408 -184687146 + L1MA9 LINE L1 5953 6159 -153 * 1597 258 87 68 chr6 4592406 4592701 -184686853 + L1ME3A LINE L1 3586 3874 -2272 2478 77 0 0 chr6 4592701 4592998 -184686556 - AluY SINE Alu -14 297 1 1597 258 87 68 chr6 4592998 4593372 -184686182 + L1ME3A LINE L1 3874 4240 -1906 2542 111 22 8 chr6 4593372 4593742 -184685812 - THE1C LTR MaLR 0 375 1 1597 258 87 68 chr6 4593742 4594077 -184685477 + L1ME3A LINE L1 4240 4621 -1525 2382 100 0 13 chr6 4594077 4594387 -184685167 - AluSq SINE Alu -7 306 1 1597 258 87 68 chr6 4594387 4594620 -184684934 + L1ME3A LINE L1 4621 4848 -1298 508 288 141 13 chr6 4594644 4595236 -184684318 + L1ME3A LINE L1 4928 5579 -591 242 320 30 0 chr6 4595739 4595839 -184683715 + LTR67 LTR ERVL 431 533 -24 906 253 50 44 chr6 4595853 4595937 -184683617 + L1ME3A LINE L1 5581 5663 -507 4904 26 7 0 chr6 4595937 4596504 -184683050 + L1PA4 LINE L1 5585 6155 0 906 253 50 44 chr6 4596504 4596779 -184682775 + L1ME3A LINE L1 5663 5944 -226 365 132 0 13 chr6 4596798 4596874 -184682680 + (TA)n Simple_repeat Simple_repeat 1 75 0 492 257 93 93 chr6 4597178 4597586 -184681968 + L1MC4a LINE L1 5617 6024 -1784 302 188 0 0 chr6 4597590 4597638 -184681916 + MER66B LTR ERV1 298 345 -141 282 281 20 69 chr6 4597685 4597888 -184681666 + L1MC4a LINE L1 6054 6246 -1562 342 0 0 0 chr6 4600114 4600152 -184679402 + (CA)n Simple_repeat Simple_repeat 1 38 0 2118 107 4 0 chr6 4600154 4600424 -184679130 - AluSx SINE Alu -36 276 6 1512 132 107 80 chr6 4600677 4601004 -184678550 - THE1C LTR MaLR 0 375 36 2233 118 0 0 chr6 4601004 4601308 -184678246 + AluSx SINE Alu 1 304 -8 1512 132 107 80 chr6 4601308 4601345 -184678209 - THE1C LTR MaLR -339 36 1 282 366 31 9 chr6 4601509 4601736 -184677818 + L2 LINE L2 2170 2401 -913 1989 112 34 14 chr6 4602627 4602921 -184676633 + AluSx SINE Alu 1 300 -12 302 287 65 0 chr6 4603286 4603394 -184676160 - MIR SINE MIR -108 154 40 2182 88 17 10 chr6 4603394 4603688 -184675866 - AluSc SINE Alu -13 296 1 401 166 12 19 chr6 4603830 4603943 -184675611 - L1M3 LINE L1 -662 5509 5402 372 262 157 34 chr6 4603911 4604262 -184675292 - L1M4 LINE L1 -3090 3056 2663 * 297 0 0 0 chr6 4604262 4604295 -184675259 + (CA)n Simple_repeat Simple_repeat 2 34 0 1723 150 67 0 chr6 4604309 4604576 -184674978 - AluSx SINE Alu -27 285 1 1925 126 48 4 chr6 4604853 4605153 -184674401 + AluSx SINE Alu 1 312 0 2128 126 0 7 chr6 4605318 4605612 -184673942 - AluSg SINE Alu -18 292 1 206 328 76 0 chr6 4605849 4605980 -184673574 + L2 LINE L2 3173 3313 0 2241 122 0 3 chr6 4606055 4606359 -184673195 + AluSq SINE Alu 1 303 -10 470 179 0 9 chr6 4606414 4606520 -184673034 + GA-rich Low_complexity Low_complexity 4 108 0 259 233 222 0 chr6 4606533 4606623 -184672931 + MER5B DNA MER1_type 69 178 0 833 197 77 0 chr6 4606957 4607034 -184672520 + L1MA9 LINE L1 6075 6145 -167 270 0 0 0 chr6 4607034 4607064 -184672490 + (CA)n Simple_repeat Simple_repeat 1 30 0 833 197 77 0 chr6 4607064 4607169 -184672385 + L1MA9 LINE L1 6145 6271 -41 1875 174 7 0 chr6 4607899 4608209 -184671345 + AluJb SINE Alu 1 312 0 1154 176 0 0 chr6 4609025 4609218 -184670336 + AluJb SINE Alu 47 239 -73 2134 146 0 0 chr6 4609703 4610004 -184669550 - AluSx SINE Alu -11 301 1 222 322 46 59 chr6 4610179 4610331 -184669223 - MIR SINE MIR -111 151 2 439 297 104 16 chr6 4610427 4610619 -184668935 + MIR SINE MIR 40 248 -14 2517 37 10 7 chr6 4612083 4612378 -184667176 + AluY SINE Alu 1 296 -15 180 0 0 0 chr6 4612710 4612730 -184666824 + (T)n Simple_repeat Simple_repeat 1 20 0 404 181 0 14 chr6 4613279 4613351 -184666203 + AluJ/FLAM SINE Alu 14 84 -228 1434 180 49 29 chr6 4613544 4613850 -184665704 + AluJo SINE Alu 1 312 0 1703 164 35 0 chr6 4613956 4614242 -184665312 - AluJb SINE Alu -5 307 12 1877 161 27 0 chr6 4614396 4614694 -184664860 - AluSx SINE Alu -6 306 1 363 267 96 84 chr6 4614879 4615029 -184664525 - L1ME4a LINE L1 -222 5899 5752 2041 127 40 3 chr6 4615029 4615329 -184664225 - AluSq SINE Alu -2 311 1 363 267 96 84 chr6 4615329 4615500 -184664054 - L1ME4a LINE L1 -369 5752 5574 380 107 0 0 chr6 4617411 4617467 -184662087 - U6 snRNA snRNA -51 56 1 1869 154 10 3 chr6 4617498 4617797 -184661757 - AluSx SINE Alu -11 301 1 2106 111 27 13 chr6 4617971 4618269 -184661285 - AluSg SINE Alu -8 302 1 673 207 326 4 chr6 4618300 4618527 -184661027 + AluJo SINE Alu 1 300 -2 258 192 39 192 chr6 4618637 4618712 -184660842 - MER81 DNA DNA -4 110 62 1996 155 0 3 chr6 4618712 4619009 -184660545 + AluSx SINE Alu 2 297 -15 258 192 39 192 chr6 4619009 4619063 -184660491 - MER81 DNA DNA -52 62 1 1119 205 114 28 chr6 4619161 4619478 -184660076 - MER2 DNA MER2_type 0 344 1 584 233 93 16 chr6 4619495 4619688 -184659866 - LTR33 LTR ERVL -3 518 311 376 272 95 25 chr6 4619715 4619873 -184659681 - LTR33 LTR ERVL -343 178 10 1736 156 7 41 chr6 4620172 4620467 -184659087 - AluSx SINE Alu -27 285 1 4849 129 37 53 chr6 4620588 4621988 -184657566 - pTR5 LTR ERV1 0 2438 740 1442 153 69 42 chr6 4622247 4622372 -184657182 + AluJo SINE Alu 1 121 -191 2257 95 14 0 chr6 4622372 4622668 -184656886 + AluSg SINE Alu 1 300 -10 832 161 37 31 chr6 4622668 4622830 -184656724 + AluJo/FRAM SINE Alu 134 296 -16 209 266 92 9 chr6 4622955 4623064 -184656490 + MIR SINE MIR 80 197 -65 1998 151 0 0 chr6 4625752 4626043 -184653511 + AluJb SINE Alu 1 291 -21 2444 84 10 0 chr6 4626511 4626820 -184652734 + AluSq SINE Alu 1 312 -1 446 305 25 30 chr6 4627212 4627409 -184652145 - L3 LINE CR1 -520 1057 862 2121 102 0 75 chr6 4627631 4627953 -184651601 + AluSx SINE Alu 1 298 -14 1808 182 0 0 chr6 4628169 4628455 -184651099 + AluJo SINE Alu 1 286 -26 23 0 0 0 chr6 4628455 4628478 -184651076 + AT_rich Low_complexity Low_complexity 1 23 0 1556 173 3 40 chr6 4628490 4628790 -184650764 + AluJo SINE Alu 3 291 -21 2132 114 43 3 chr6 4629957 4630256 -184649298 - AluSx SINE Alu -1 311 1 207 297 0 14 chr6 4630765 4630839 -184648715 + G-rich Low_complexity Low_complexity 2 74 0 705 160 75 64 chr6 4631054 4631121 -184648433 - Charlie4a DNA MER1_type -1465 496 431 2388 82 3 13 chr6 4631121 4631426 -184648128 + AluSp SINE Alu 1 302 -11 705 160 75 64 chr6 4631426 4631545 -184648009 - Charlie4a DNA MER1_type -1530 431 308 1620 199 62 71 chr6 4631548 4631598 -184647956 - L1MA10 LINE L1 -7 6327 6278 2084 125 0 7 chr6 4631598 4631894 -184647660 + AluSq SINE Alu 1 294 -19 1620 199 62 71 chr6 4631894 4632310 -184647244 - L1MA10 LINE L1 -56 6278 5865 1124 189 84 0 chr6 4632310 4632548 -184647006 - Charlie4a DNA MER1_type -192 316 59 1907 83 117 0 chr6 4633487 4633753 -184645801 + AluSx SINE Alu 1 297 -15 1467 94 0 0 chr6 4633755 4633936 -184645618 - AluSc SINE Alu -123 186 6 437 309 96 18 chr6 4633940 4634222 -184645332 + L1MC4a LINE L1 5080 5383 -763 1750 144 0 11 chr6 4634238 4634501 -184645053 + AluSx SINE Alu 29 288 -24 816 311 80 26 chr6 4634524 4634977 -184644577 + L1MC4a LINE L1 5374 5850 -1958 2354 84 3 0 chr6 4634996 4635342 -184644212 + AluSp SINE Alu 1 347 0 2231 110 0 28 chr6 4635352 4635670 -184643884 + AluSq SINE Alu 1 309 -4 2312 89 7 3 chr6 4635788 4636091 -184643463 + AluSp SINE Alu 1 304 -9 1155 162 19 14 chr6 4636417 4636633 -184642921 + MER20 DNA MER1_type 1 217 -2 2310 108 0 0 chr6 4636906 4637203 -184642351 - AluSx SINE Alu -15 297 1 1296 274 84 32 chr6 4637452 4637926 -184641628 - MLT1J LTR MaLR -2 509 11 1707 153 38 51 chr6 4638195 4638509 -184641045 + AluJb SINE Alu 1 310 -2 1830 154 3 10 chr6 4640331 4640623 -184638931 + AluJo SINE Alu 4 293 -19 891 210 113 21 chr6 4640705 4640943 -184638611 - MIR SINE MIR -2 260 1 1796 141 17 23 chr6 4641077 4641376 -184638178 - AluJo SINE Alu -15 297 1 1032 79 14 36 chr6 4641571 4641710 -184637844 + AluSq/x SINE Alu 1 136 -177 233 283 98 39 chr6 4641879 4642084 -184637470 - L2 LINE L2 -213 3059 2843 2217 101 10 0 chr6 4642200 4642496 -184637058 + AluSg SINE Alu 1 299 -11 184 266 83 37 chr6 4642831 4642940 -184636614 - L2 LINE L2 -1034 2280 2167 2236 114 0 0 chr6 4643143 4643440 -184636114 + AluSg SINE Alu 1 297 -13 401 348 51 62 chr6 4643897 4644153 -184635401 + L2 LINE L2 3020 3272 0 409 202 146 0 chr6 4644371 4644460 -184635094 + FLAM_C SINE Alu 2 103 -40 228 35 0 0 chr6 4644773 4644802 -184634752 + (CA)n Simple_repeat Simple_repeat 2 30 0 224 225 75 38 chr6 4645036 4645116 -184634438 - MIR3 SINE MIR -10 198 116 180 176 0 0 chr6 4645339 4645373 -184634181 + L2 LINE L2 3201 3234 -38 1019 69 30 13 chr6 4645398 4645635 -184633919 + (TGGA)n Simple_repeat Simple_repeat 1 241 0 367 232 84 0 chr6 4645923 4646018 -184633536 + MER94 DNA DNA 1 103 -31 825 177 0 0 chr6 4646174 4646298 -184633256 + FLAM_C SINE Alu 2 125 -18 26 0 0 0 chr6 4646301 4646327 -184633227 + AT_rich Low_complexity Low_complexity 1 26 0 814 158 0 0 chr6 4646594 4646721 -184632833 - AluJb SINE Alu -185 127 1 316 355 21 35 chr6 4646849 4646990 -184632564 + MIR3 SINE MIR 32 170 -38 357 24 0 0 chr6 4647860 4647902 -184631652 + (CA)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr6 4648580 4648615 -184630939 + AT_rich Low_complexity Low_complexity 1 35 0 299 301 60 15 chr6 4648637 4648770 -184630784 + MIR SINE MIR 54 192 -70 2217 118 0 0 chr6 4649105 4649409 -184630145 + AluSx SINE Alu 1 304 -8 251 135 0 0 chr6 4649409 4649446 -184630108 - MSTA LTR MaLR -391 37 1 281 337 143 14 chr6 4649466 4649837 -184629717 + L2 LINE L2 1983 2401 -913 1972 112 34 14 chr6 4650728 4651022 -184628532 + AluSx SINE Alu 1 300 -12 346 323 77 7 chr6 4651340 4651495 -184628059 - MIR SINE MIR -57 205 40 2162 88 17 10 chr6 4651495 4651789 -184627765 - AluSc SINE Alu -13 296 1 407 166 12 19 chr6 4651931 4652044 -184627510 - L1M3 LINE L1 -662 5509 5402 248 249 100 39 chr6 4652012 4652310 -184627244 - L1M3 LINE L1 -3090 3056 2719 * 36 0 0 21 chr6 4652458 4652490 -184627064 + AT_rich Low_complexity Low_complexity 1 33 -13 2226 95 3 0 chr6 4652490 4652775 -184626779 - AluSx SINE Alu -26 286 1 36 0 0 21 chr6 4652775 4652789 -184626765 + AT_rich Low_complexity Low_complexity 33 46 0 729 195 0 0 chr6 4652789 4652907 -184626647 + FRAM SINE Alu 1 113 -63 2657 51 0 10 chr6 4653114 4653428 -184626126 - AluY SINE Alu 0 311 1 621 245 155 0 chr6 4653527 4653682 -184625872 + MER5A DNA MER1_type 11 189 0 189 0 0 0 chr6 4655110 4655131 -184624423 + (TG)n Simple_repeat Simple_repeat 2 22 0 426 94 0 0 chr6 4655133 4655197 -184624357 + (TAGG)n Simple_repeat Simple_repeat 4 67 0 1633 178 25 0 chr6 4655198 4655484 -184624070 - AluJb SINE Alu -19 293 1 906 119 0 30 chr6 4656290 4656424 -184623130 + FRAM SINE Alu 29 158 -18 180 0 0 0 chr6 4657298 4657318 -184622236 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2222 100 0 34 chr6 4657323 4657644 -184621910 - AluSq SINE Alu -3 310 1 299 301 60 15 chr6 4657979 4658112 -184621442 - MIR SINE MIR -70 192 54 28 29 0 0 chr6 4658134 4658169 -184621385 + AT_rich Low_complexity Low_complexity 1 35 0 357 24 0 0 chr6 4658847 4658889 -184620665 + (TG)n Simple_repeat Simple_repeat 2 43 0 316 355 21 35 chr6 4659759 4659900 -184619654 - MIR3 SINE MIR -38 170 32 814 158 0 0 chr6 4660028 4660155 -184619399 + AluJb SINE Alu 1 127 -185 2029 136 3 3 chr6 4660331 4660617 -184618937 + AluSx SINE Alu 1 286 -26 186 71 0 0 chr6 4660617 4660645 -184618909 + (TA)n Simple_repeat Simple_repeat 2 29 0 1993 121 7 10 chr6 4660653 4660943 -184618611 + AluSx SINE Alu 1 289 -23 28 61 0 0 chr6 4661115 4661164 -184618390 + AT_rich Low_complexity Low_complexity 1 49 0 2513 64 0 6 chr6 4661231 4661542 -184618012 - AluY SINE Alu -2 309 1 292 292 36 18 chr6 4661626 4661794 -184617760 - L1ME4a LINE L1 -226 5895 5725 2424 82 10 0 chr6 4661877 4662249 -184617305 + AluSq SINE Alu 5 379 0 2239 103 0 0 chr6 4663623 4663915 -184615639 - AluSg SINE Alu -18 292 1 243 254 111 0 chr6 4664042 4664105 -184615449 + MIR SINE MIR 123 192 -70 2235 284 120 40 chr6 4664524 4665934 -184613620 + L1MEd LINE L1 543 1838 -4291 2109 136 0 13 chr6 4665934 4666236 -184613318 + AluSx SINE Alu 1 298 -14 2235 284 120 40 chr6 4666236 4666552 -184613002 + L1MEd LINE L1 1838 2127 -4002 2264 123 0 0 chr6 4666552 4666861 -184612693 - AluSg SINE Alu -1 309 1 2235 284 120 40 chr6 4666861 4667314 -184612240 + L1MEd LINE L1 2127 2542 -3587 2053 131 7 7 chr6 4667314 4667619 -184611935 + AluSx SINE Alu 1 305 -7 2235 284 120 40 chr6 4667619 4667828 -184611726 + L1MEd LINE L1 2542 2733 -3396 2179 131 0 0 chr6 4667828 4668134 -184611420 - AluSx SINE Alu -3 309 4 2235 284 120 40 chr6 4668134 4668473 -184611081 + L1MEd LINE L1 2733 3043 -3086 2319 106 0 3 chr6 4668473 4668784 -184610770 - AluSq SINE Alu -3 310 1 2235 284 120 40 chr6 4668784 4668996 -184610558 + L1MEd LINE L1 3043 3237 -2892 1701 164 20 16 chr6 4668996 4669301 -184610253 + AluJb SINE Alu 1 306 -6 2235 284 120 40 chr6 4669301 4669538 -184610016 + L1MEd LINE L1 3237 3938 -2191 2042 122 0 0 chr6 4669566 4669844 -184609710 + AluSg SINE Alu 1 278 -32 267 140 0 0 chr6 4669846 4669896 -184609658 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 369 258 157 13 chr6 4669896 4670055 -184609499 + L1MEd LINE L1 3947 4128 -2001 188 346 99 16 chr6 4670303 4670485 -184609069 + L2 LINE L2 2825 3021 -251 4236 143 110 99 chr6 4670523 4670928 -184608626 + L1MC3 LINE L1 6133 5748 -585 231 276 46 0 chr6 4670928 4671015 -184608539 + MLT1F1 LTR MaLR 35 125 -442 4236 143 110 99 chr6 4671015 4671609 -184607945 + L1MC3 LINE L1 5747 6333 0 2307 70 17 7 chr6 4672065 4672239 -184607315 - AluY SINE Alu -7 304 124 405 0 0 0 chr6 4672239 4672284 -184607270 + (TG)n Simple_repeat Simple_repeat 2 46 0 2307 70 17 7 chr6 4672284 4672410 -184607144 - AluY SINE Alu -187 124 1 342 313 157 0 chr6 4672436 4672551 -184607003 + L2 LINE L2 3134 3266 -6 323 197 0 0 chr6 4672734 4672795 -184606759 + MIR SINE MIR 181 241 -21 21 0 0 0 chr6 4672806 4672827 -184606727 + AT_rich Low_complexity Low_complexity 1 21 0 316 163 75 25 chr6 4673148 4673228 -184606326 + MER112 DNA MER1_type 1 84 -176 412 186 0 93 chr6 4673347 4673388 -184606166 - MER5A DNA MER1_type -81 108 65 2092 117 0 23 chr6 4673388 4673687 -184605867 - AluSx SINE Alu -20 292 1 412 186 0 93 chr6 4673687 4673763 -184605791 - MER5A DNA MER1_type -124 65 2 189 74 0 0 chr6 4673979 4674006 -184605548 + (TC)n Simple_repeat Simple_repeat 2 28 0 29 110 0 0 chr6 4677891 4678018 -184601536 + GC_rich Low_complexity Low_complexity 1 127 0 272 229 9 46 chr6 4678417 4678526 -184601028 + C-rich Low_complexity Low_complexity 3 107 0 188 33 0 33 chr6 4678553 4678583 -184600971 + (CCCCG)n Simple_repeat Simple_repeat 5 33 0 209 143 20 20 chr6 4678731 4678780 -184600774 + (CCCCG)n Simple_repeat Simple_repeat 3 51 0 22 0 0 0 chr6 4678872 4678894 -184600660 + GC_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr6 4678993 4679021 -184600533 + GC_rich Low_complexity Low_complexity 1 28 0 271 124 41 52 chr6 4679107 4679204 -184600350 + (CCCG)n Simple_repeat Simple_repeat 4 99 0 190 292 117 25 chr6 4680266 4680386 -184599168 - L2 LINE L2 -1 3312 3182 441 257 189 22 chr6 4681107 4681329 -184598225 + MIR SINE MIR 3 261 -1 189 310 0 52 chr6 4681732 4681790 -184597764 + L2 LINE L2 3203 3257 -15 1109 225 64 35 chr6 4682028 4682339 -184597215 - MER58B DNA MER1_type -21 320 1 1495 144 9 115 chr6 4682494 4682842 -184596712 - AluYa5 SINE Alu 0 311 1 467 309 34 73 chr6 4685441 4685691 -184593863 - L1MEc LINE L1 -4641 1669 1438 2110 133 0 7 chr6 4685691 4685992 -184593562 - AluSq SINE Alu -14 299 1 467 309 34 73 chr6 4685992 4686123 -184593431 - L1MEc LINE L1 -4872 1438 1303 490 246 126 62 chr6 4686149 4686458 -184593096 - L1MEc LINE L1 -4883 1236 908 1932 144 73 12 chr6 4686896 4686998 -184592556 + MER7A DNA MER2_type 2 96 -2942 2513 112 20 0 chr6 4686998 4687355 -184592199 + THE1B LTR MaLR 1 364 0 1932 144 73 12 chr6 4687355 4687579 -184591975 + MER7A DNA MER2_type 96 346 0 2258 114 3 0 chr6 4690039 4690345 -184589209 - AluSx SINE Alu -5 307 1 1939 129 34 3 chr6 4690481 4690776 -184588778 + AluSx SINE Alu 1 304 -8 1790 170 7 0 chr6 4691347 4691647 -184587907 - AluJb SINE Alu -10 302 1 375 293 61 45 chr6 4693637 4693835 -184585719 + MARNA DNA Mariner 275 475 -111 2511 55 0 32 chr6 4694157 4694465 -184585089 - AluY SINE Alu -13 298 1 490 250 141 68 chr6 4694518 4694707 -184584847 - L1ME LINE L1 -840 5240 5066 2191 109 3 17 chr6 4694707 4695009 -184584545 - AluSx SINE Alu -14 298 1 490 250 141 68 chr6 4695009 4695512 -184584042 - L1ME LINE L1 -1014 5066 4497 205 262 0 83 chr6 4695512 4695596 -184583958 - L2 LINE L2 -59 3254 3178 2143 244 140 48 chr6 4695713 4696932 -184582622 - L2 LINE L2 -421 2893 1563 554 279 148 41 chr6 4697097 4697638 -184581916 - L1ME LINE L1 -1801 4279 3681 1794 104 100 19 chr6 4698236 4698506 -184581048 - AluSx SINE Alu -20 292 1 22 0 0 0 chr6 4698639 4698661 -184580893 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr6 4699681 4699708 -184579846 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 2366 194 55 30 chr6 4699708 4700233 -184579321 - L1MB7 LINE L1 -16 6168 5631 1869 197 0 0 chr6 4700237 4700546 -184579008 - AluJb SINE Alu -3 309 1 2315 264 131 37 chr6 4700876 4701717 -184577837 - L1ME LINE L1 -2406 3674 2913 1609 176 51 14 chr6 4701717 4702012 -184577542 - AluJb SINE Alu -6 306 1 2315 264 131 37 chr6 4702012 4704051 -184575503 - L1ME LINE L1 -3167 2913 278 1795 171 3 7 chr6 4704534 4704826 -184574728 + AluJo SINE Alu 6 296 -16 180 0 0 0 chr6 4706007 4706027 -184573527 + (T)n Simple_repeat Simple_repeat 1 20 0 23 54 0 0 chr6 4706189 4706226 -184573328 + AT_rich Low_complexity Low_complexity 1 37 0 2582 162 24 31 chr6 4707714 4708225 -184571329 - MLT2B1 LTR ERVL -8 512 6 4203 221 91 51 chr6 4708708 4709111 -184570443 - L1MC4a LINE L1 0 7808 7422 1438 218 17 57 chr6 4709111 4709514 -184570040 - MLT1B LTR MaLR 0 390 4 4203 221 91 51 chr6 4709514 4709865 -184569689 - L1MC4a LINE L1 -386 7422 7086 2072 137 0 9 chr6 4709865 4710180 -184569374 - AluJo SINE Alu 0 312 1 4203 221 91 51 chr6 4710180 4710811 -184568743 - L1MC4a LINE L1 -722 7086 6367 565 245 0 2 chr6 4710812 4710997 -184568557 + MER58A DNA MER1_type 6 223 -1 2555 218 53 30 chr6 4711005 4711740 -184567814 - L1MC4a LINE L1 -1434 6374 5623 1480 176 76 53 chr6 4712867 4713224 -184566330 - MLT1A1 LTR MaLR 0 365 1 241 163 23 0 chr6 4713322 4713365 -184566189 + MER69 DNA AcHobo 1 44 -1182 901 168 37 102 chr6 4713879 4714123 -184565431 - AluJo SINE Alu -8 304 77 326 227 31 41 chr6 4714249 4714346 -184565208 + MER5A DNA MER1_type 14 109 -80 342 260 127 48 chr6 4714466 4714786 -184564768 - L1MC4a LINE L1 -494 5627 5538 * 500 264 88 89 chr6 4714783 4715735 -184563819 - L1MC4a LINE L1 -1331 4815 3865 1679 177 16 35 chr6 4716035 4716352 -184563202 - AluJb SINE Alu -1 311 1 1893 152 10 7 chr6 4716793 4717096 -184562458 - AluSx SINE Alu -8 304 1 201 175 0 0 chr6 4717480 4717520 -184562034 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 321 310 147 11 chr6 4717747 4717931 -184561623 - L1MC4a LINE L1 -485 5636 5428 222 91 0 0 chr6 4717947 4717980 -184561574 + (T)n Simple_repeat Simple_repeat 1 33 0 1868 155 36 7 chr6 4718759 4719062 -184560492 - AluSx SINE Alu 0 312 1 1842 160 7 0 chr6 4720248 4720562 -184558992 + AluJb SINE Alu 1 316 0 423 0 0 0 chr6 4721390 4721437 -184558117 + (TC)n Simple_repeat Simple_repeat 2 48 0 189 0 0 0 chr6 4721436 4721457 -184558097 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 954 169 13 65 chr6 4721962 4722193 -184557361 + MER20 DNA MER1_type 1 219 0 1054 56 0 42 chr6 4723534 4723676 -184555878 - AluSg/x SINE Alu -1 309 174 2058 130 3 10 chr6 4723725 4724025 -184555529 + AluSx SINE Alu 1 298 -14 1669 154 6 91 chr6 4724241 4724571 -184554983 - AluJb SINE Alu -9 303 2 372 211 158 0 chr6 4725872 4726005 -184553549 - L1MB4 LINE L1 -12 6168 6015 * 3469 183 64 33 chr6 4725999 4727048 -184552506 - L1MB4 LINE L1 -11 6667 5590 360 202 48 10 chr6 4727043 4727147 -184552407 - L1MB4 LINE L1 -1433 5211 5104 * 2232 116 0 0 chr6 4727148 4727440 -184552114 - AluSx SINE Alu -16 296 5 1153 208 224 32 chr6 4727500 4728001 -184551553 - L1MB4 LINE L1 -1800 4844 4248 666 248 57 52 chr6 4728005 4728215 -184551339 - MER82 DNA MER2_type 0 653 443 383 303 6 46 chr6 4728261 4728394 -184551160 + MIR SINE MIR 31 164 -44 3176 213 118 72 chr6 4728490 4729932 -184549622 - L1MB4 LINE L1 -2849 3795 2421 2209 118 3 0 chr6 4729932 4730228 -184549326 - AluSx SINE Alu -15 297 1 3176 213 118 72 chr6 4730228 4730526 -184549028 - L1MB4 LINE L1 -4223 2421 2138 1200 100 6 18 chr6 4730526 4730696 -184548858 - FRAM SINE Alu -9 167 1 3176 213 118 72 chr6 4730696 4731674 -184547880 - L1MB4 LINE L1 -4506 2138 776 183 80 0 0 chr6 4731674 4731699 -184547855 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 3176 213 118 72 chr6 4731699 4731874 -184547680 - L1MB4 LINE L1 -5868 776 611 266 280 77 33 chr6 4732174 4732356 -184547198 - L1MB4 LINE L1 -6335 207 18 4862 21 0 9 chr6 4732872 4733446 -184546108 - L1PA3 LINE L1 -1 6154 5586 39892 37 2 2 chr6 4733449 4738504 -184541050 - L1PA3 LINE L1 -1090 5056 2 352 266 79 50 chr6 4739222 4739361 -184540193 + L2 LINE L2 3128 3270 -2 22 35 0 0 chr6 4739628 4739657 -184539897 + AT_rich Low_complexity Low_complexity 1 29 0 2318 89 0 19 chr6 4739722 4740038 -184539516 - AluSg SINE Alu 0 310 1 1627 201 0 13 chr6 4740043 4740351 -184539203 - AluJb SINE Alu -8 304 1 10689 178 30 5 chr6 4740433 4740967 -184538587 - L1PB1 LINE L1 0 6867 6348 2087 92 36 0 chr6 4740967 4741248 -184538306 - AluSg SINE Alu -19 291 1 10689 178 30 5 chr6 4741248 4743113 -184536441 - L1PB1 LINE L1 -519 6348 4350 205 49 0 49 chr6 4743113 4743154 -184536400 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 10689 178 30 5 chr6 4743154 4744230 -184535324 - L1PB1 LINE L1 -2517 4350 3303 51 0 0 0 chr6 4744230 4744281 -184535273 + AT_rich Low_complexity Low_complexity 1 51 0 276 99 64 41 chr6 4744281 4744453 -184535101 + (TTATA)n Simple_repeat Simple_repeat 1 176 0 271 173 13 13 chr6 4744456 4744531 -184535023 + (TAA)n Simple_repeat Simple_repeat 1 75 0 8231 119 60 37 chr6 4744538 4746490 -184533064 - L1PB1 LINE L1 -3493 3369 1389 521 79 8 0 chr6 4746533 4746658 -184532896 - L1PB1 LINE L1 -5700 1163 995 1051 149 0 5 chr6 4746658 4746853 -184532701 - L1PB1 LINE L1 -6669 194 1 768 218 94 24 chr6 4746953 4747523 -184532031 + MER114 LTR ERV 1 648 0 180 0 0 0 chr6 4747565 4747585 -184531969 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 1505 212 36 3 chr6 4747824 4748154 -184531400 - MER58B DNA MER1_type 0 341 1 297 232 0 0 chr6 4749088 4749144 -184530410 + MER94 DNA DNA 79 134 0 299 239 83 46 chr6 4749393 4749502 -184530052 - MER5A DNA MER1_type 0 189 77 185 333 31 23 chr6 4750416 4750545 -184529009 + L2 LINE L2 3183 3312 -1 364 254 132 54 chr6 4752009 4752214 -184527340 - L2 LINE L2 -18 3295 3075 227 194 78 108 chr6 4752229 4752358 -184527196 + MIR SINE MIR 57 133 -75 211 324 15 15 chr6 4752480 4752548 -184527006 - L2 LINE L2 -4 3268 3201 380 188 247 39 chr6 4753435 4753589 -184525965 + MIR SINE MIR 48 233 -29 304 345 39 0 chr6 4754310 4754542 -184525012 - L1MC4 LINE L1 -701 7341 7101 1050 89 16 0 chr6 4754589 4754897 -184524657 + (TTCC)n Simple_repeat Simple_repeat 1 313 0 330 295 20 13 chr6 4755015 4755069 -184524485 - L1MC4 LINE L1 -1037 7005 6953 1721 171 34 0 chr6 4755069 4755362 -184524192 - AluJo SINE Alu -9 303 1 330 295 20 13 chr6 4755362 4755456 -184524098 - L1MC4 LINE L1 -1089 6953 6856 556 276 45 78 chr6 4755486 4755729 -184523825 - MIR SINE MIR -15 247 13 246 156 0 0 chr6 4755744 4755789 -184523765 + CT-rich Low_complexity Low_complexity 6 50 0 948 142 11 80 chr6 4757560 4757736 -184521818 - AluJo SINE Alu -22 290 127 252 156 0 0 chr6 4758063 4758108 -184521446 + MER112 DNA MER1_type 205 249 -11 631 262 112 65 chr6 4758362 4758747 -184520807 - L2 LINE L2 -28 3285 2883 366 263 244 25 chr6 4758793 4759109 -184520445 - L2 LINE L2 -645 2669 2285 641 136 40 0 chr6 4759409 4759534 -184520020 - L1MB3 LINE L1 -1 6182 6053 224 317 59 54 chr6 4760655 4760876 -184518678 - MIR SINE MIR -33 229 8 728 226 74 43 chr6 4760986 4761216 -184518338 + MIR SINE MIR 16 252 -10 2582 64 0 0 chr6 4762163 4762474 -184517080 - AluY SINE Alu 0 311 1 295 80 0 20 chr6 4762735 4762785 -184516769 - MLT2A1 LTR ERVL -8 445 397 271 79 89 20 chr6 4762787 4762888 -184516666 + (TA)n Simple_repeat Simple_repeat 2 109 0 2397 101 40 18 chr6 4762919 4763314 -184516240 - MLT2A1 LTR ERVL -40 404 1 3106 170 5 4 chr6 4765069 4765628 -184513926 + L1PA16 LINE L1 5587 6146 -20 521 319 128 24 chr6 4766189 4766590 -184512964 + L1MCa LINE L1 1376 2051 -736 2511 107 6 8 chr6 4766780 4767136 -184512418 + THE1A LTR MaLR 1 355 0 2643 127 8 106 chr6 4767224 4767816 -184511738 + LTR10A LTR ERV1 12 545 -64 309 279 211 19 chr6 4768129 4768441 -184511113 + L1MCa LINE L1 2831 3202 -3224 402 274 135 61 chr6 4768546 4768769 -184510785 + L1MCa LINE L1 3406 3611 -2815 1131 168 25 0 chr6 4768769 4768972 -184510582 + MER6B DNA MER2_type 2 209 -1 402 274 135 61 chr6 4768972 4769207 -184510347 + L1MCa LINE L1 3611 3898 -2528 1603 245 98 14 chr6 4769485 4770037 -184509517 - L1M4 LINE L1 -1856 4788 4191 2532 244 72 73 chr6 4770080 4771362 -184508192 - L1M4 LINE L1 -2692 3952 2700 2248 124 0 0 chr6 4771362 4771669 -184507885 - AluSx SINE Alu -5 307 1 2532 244 72 73 chr6 4771669 4772314 -184507240 - L1M4 LINE L1 -3944 2700 2056 937 188 0 0 chr6 4772345 4772494 -184507060 - FRAM SINE Alu -19 157 9 1100 257 109 35 chr6 4772522 4773318 -184506236 - L1M4 LINE L1 -4732 1914 1076 391 167 0 0 chr6 4773645 4773711 -184505843 - Tigger4(Zombi) DNA MER2_type -2665 66 1 2043 121 13 3 chr6 4774655 4774953 -184504601 - AluSq SINE Alu -12 301 1 2037 255 98 5 chr6 4776850 4777496 -184502058 - L1ME2 LINE L1 -4 6160 5455 940 246 100 36 chr6 4777468 4777967 -184501587 - L1ME2 LINE L1 -1381 4765 4235 * 1534 204 79 78 chr6 4778236 4778991 -184500563 - L1ME2 LINE L1 -15 6218 5359 384 131 0 0 chr6 4779019 4779080 -184500474 + MLT1A1-int LTR MaLR 1662 1722 -13 1759 207 64 0 chr6 4779113 4779456 -184500098 + MLT1A1 LTR MaLR 1 365 0 1315 272 61 43 chr6 4779580 4780283 -184499271 - L1ME2 LINE L1 -968 5247 4532 * 2539 237 136 56 chr6 4780277 4781731 -184497823 - L1ME2 LINE L1 -2228 3987 2418 2437 91 0 3 chr6 4781826 4782133 -184497421 - AluSq SINE Alu -7 306 1 5413 160 62 20 chr6 4782139 4783263 -184496291 - L1MC1 LINE L1 -2 6331 5172 561 265 48 59 chr6 4783254 4783612 -184495942 - L1ME2 LINE L1 -3826 2389 2076 * 401 312 51 22 chr6 4783673 4783811 -184495743 + MER5A DNA MER1_type 33 174 -15 488 221 129 42 chr6 4783817 4784057 -184495497 - L1ME2 LINE L1 -4387 2009 1749 1090 264 123 21 chr6 4784113 4784495 -184495059 + LTR40b LTR ERVL 1 421 -41 940 288 123 83 chr6 4784512 4785284 -184494270 + HERVL40 LTR ERVL 43 845 -4685 258 250 14 0 chr6 4785330 4785402 -184494152 + HERVL40 LTR ERVL 2041 2113 -924 252 246 18 0 chr6 4785517 4785574 -184493980 + HERVL40 LTR ERVL 2214 2271 -766 309 197 0 0 chr6 4786497 4786558 -184492996 + HERVL40 LTR ERVL 2830 2890 -147 * 960 253 42 0 chr6 4786547 4786788 -184492766 + HERVL40 LTR ERVL 5278 5528 -2 925 267 105 24 chr6 4786790 4787161 -184492393 + LTR40a LTR ERVL 1 401 -118 1296 222 4 33 chr6 4787163 4787271 -184492283 + Tigger7 DNA MER2_type 1 111 -2376 1938 166 0 0 chr6 4787271 4787567 -184491987 - AluJo SINE Alu -16 296 1 1296 222 4 33 chr6 4787567 4787733 -184491821 + Tigger7 DNA MER2_type 111 267 -2220 429 216 0 0 chr6 4787734 4787822 -184491732 + Tigger7 DNA MER2_type 2400 2487 -4 502 139 37 56 chr6 4787833 4787941 -184491613 + LTR40a LTR ERVL 410 515 -4 8183 211 81 25 chr6 4788009 4791343 -184488211 - L1MB8 LINE L1 0 6178 2658 815 213 54 76 chr6 4791478 4791496 -184488058 + MER58B DNA MER1_type 71 88 -2332 2408 73 3 3 chr6 4791496 4791796 -184487758 - AluSg SINE Alu -10 300 1 815 213 54 76 chr6 4791796 4792054 -184487500 + MER58B DNA MER1_type 88 341 0 2305 97 0 0 chr6 4795684 4795984 -184483570 + AluSx SINE Alu 1 300 -12 210 282 118 0 chr6 4796377 4796462 -184483092 - MIR3 SINE MIR -8 200 106 673 256 36 15 chr6 4796630 4796825 -184482729 + MER58 DNA MER1_type 2 200 -2220 1165 105 7 0 chr6 4796870 4797022 -184482532 - AluSq SINE Alu -160 153 1 228 67 0 0 chr6 4797108 4797138 -184482416 + (TG)n Simple_repeat Simple_repeat 2 31 0 241 326 0 0 chr6 4797157 4797246 -184482308 + L1MC4 LINE L1 6615 6703 -1339 252 235 0 0 chr6 4797246 4797314 -184482240 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 249 299 23 0 chr6 4797315 4797402 -184482152 + L1MC4 LINE L1 6615 6703 -1339 245 299 23 0 chr6 4797338 4797425 -184482129 - L1MC4 LINE L1 -1339 6703 6615 * 204 217 0 0 chr6 4797428 4797474 -184482080 + (TA)n Simple_repeat Simple_repeat 2 47 0 269 299 86 8 chr6 4797995 4798112 -184481442 + L2 LINE L2 3186 3311 -2 827 152 0 8 chr6 4799298 4799423 -184480131 + FLAM_C SINE Alu 1 124 -19 1851 83 8 12 chr6 4799481 4799735 -184479819 + AluY SINE Alu 43 295 -16 969 159 6 29 chr6 4799736 4799906 -184479648 + AluJo/FRAM SINE Alu 138 303 -9 1126 258 54 81 chr6 4800890 4801444 -184478110 - MER34 LTR ERV1 -3 539 1 482 179 36 27 chr6 4801963 4802075 -184477479 - L1MC4 LINE L1 -2 8040 7928 218 205 0 0 chr6 4802094 4802133 -184477421 + (CATATA)n Simple_repeat Simple_repeat 1 39 0 465 66 0 0 chr6 4802433 4802494 -184477060 + (TA)n Simple_repeat Simple_repeat 2 62 0 262 250 62 0 chr6 4802528 4802592 -184476962 - U6 snRNA snRNA -1 106 39 263 254 112 52 chr6 4803201 4803335 -184476219 - MIR3 SINE MIR -62 146 5 336 287 143 56 chr6 4803380 4803666 -184475888 - MLT1K LTR MaLR -1 587 277 2218 92 10 26 chr6 4803780 4804085 -184475469 + AluSp SINE Alu 1 300 -13 431 196 27 9 chr6 4807445 4807557 -184471997 - L1MA4A LINE L1 -1 6302 6189 1493 161 19 74 chr6 4809013 4809337 -184470217 - AluJb SINE Alu -6 306 1 304 352 102 51 chr6 4811112 4811234 -184468320 + L2 LINE L2 2653 2767 -505 2117 102 3 16 chr6 4811234 4811537 -184468017 - AluY SINE Alu -12 299 1 304 352 102 51 chr6 4811537 4811962 -184467592 + L2 LINE L2 2767 3263 -9 2268 55 41 17 chr6 4812497 4812790 -184466764 - AluY SINE Alu -11 300 1 23 86 0 0 chr6 4813329 4813387 -184466167 + AT_rich Low_complexity Low_complexity 1 58 0 700 241 76 101 chr6 4813434 4813908 -184465646 - LTR37B LTR ERV1 -2 466 5 226 278 118 66 chr6 4814156 4814262 -184465292 - L2 LINE L2 -506 2808 2709 1942 153 138 31 chr6 4814262 4814647 -184464907 - MSTC LTR MaLR -2 426 1 226 278 118 66 chr6 4814647 4814752 -184464802 - L2 LINE L2 -605 2709 2586 28 0 0 0 chr6 4814918 4814946 -184464608 + AT_rich Low_complexity Low_complexity 1 28 0 1009 211 57 0 chr6 4815353 4815562 -184463992 - MER58A DNA MER1_type -1 223 3 326 192 111 134 chr6 4815638 4815810 -184463744 - L1MCc LINE L1 -5396 1027 860 362 335 78 9 chr6 4816064 4816294 -184463260 - L1MCc LINE L1 -6091 332 87 5411 136 22 23 chr6 4817046 4817919 -184461635 + MER4D LTR ERV1 1 872 0 1095 154 104 36 chr6 4821070 4821290 -184458264 - MER46A DNA MER2_type 0 236 2 2086 211 112 6 chr6 4821476 4822011 -184457543 + L1MB4 LINE L1 5589 6180 0 1958 132 11 0 chr6 4822300 4822581 -184456973 - AluSx SINE Alu -28 284 1 213 39 0 0 chr6 4822661 4822687 -184456867 + (TG)n Simple_repeat Simple_repeat 1 26 0 221 204 0 0 chr6 4823481 4823525 -184456029 - L2 LINE L2 -7 3306 3263 4256 135 67 21 chr6 4824624 4825371 -184454183 - L1MA5 LINE L1 -3 6297 5517 1821 35 0 31 chr6 4825371 4825597 -184453957 + AluY SINE Alu 92 310 -1 210 281 18 0 chr6 4825617 4825674 -184453880 + MER5B DNA MER1_type 121 178 0 2263 50 10 17 chr6 4827065 4827362 -184452192 - AluY SINE Alu 0 311 17 377 242 144 70 chr6 4828668 4828953 -184450601 - L1ME4a LINE L1 -270 5920 5615 291 54 0 0 chr6 4829089 4829126 -184450428 + (TG)n Simple_repeat Simple_repeat 2 38 0 1569 118 126 16 chr6 4829127 4829381 -184450173 - AluSx SINE Alu -26 286 5 328 228 167 83 chr6 4829772 4829918 -184449636 - L1ME4a LINE L1 -1487 4728 4596 195 42 0 0 chr6 4829918 4829942 -184449612 + (TG)n Simple_repeat Simple_repeat 1 24 0 328 228 167 83 chr6 4829942 4830119 -184449435 - L1ME4a LINE L1 -1619 4596 4378 753 278 80 36 chr6 4830665 4831159 -184448395 - L1ME4a LINE L1 -4559 1658 1112 354 45 0 0 chr6 4831159 4831203 -184448351 + (CA)n Simple_repeat Simple_repeat 2 45 0 753 278 80 36 chr6 4831203 4831320 -184448234 - L1ME4a LINE L1 -5105 1112 1002 1417 287 69 47 chr6 4831364 4832315 -184447239 - L1ME4a LINE L1 -5381 1015 44 245 292 191 0 chr6 4832730 4832819 -184446735 + MIR3 SINE MIR 75 180 -28 631 314 98 25 chr6 4832823 4833180 -184446374 - L2 LINE L2 -20 3293 2911 1586 198 25 38 chr6 4833819 4834187 -184445367 - MLT1A1 LTR MaLR -2 363 1 339 278 101 65 chr6 4835472 4835720 -184443834 + L1MC4a LINE L1 5676 5932 -1876 26 30 0 0 chr6 4835983 4836016 -184443538 + AT_rich Low_complexity Low_complexity 1 33 0 191 372 26 0 chr6 4838178 4838256 -184441298 - MIR SINE MIR -122 140 61 863 128 0 0 chr6 4838803 4838928 -184440626 + FLAM_C SINE Alu 1 125 -18 1476 194 3 7 chr6 4838940 4839234 -184440320 + AluJo SINE Alu 1 293 -19 186 156 0 0 chr6 4839937 4839982 -184439572 + T-rich Low_complexity Low_complexity 1 45 0 1365 105 35 18 chr6 4840179 4840408 -184439146 - L1MA8 LINE L1 -5 6286 6054 22 0 0 0 chr6 4845995 4846017 -184433537 + AT_rich Low_complexity Low_complexity 1 22 0 435 223 116 0 chr6 4846498 4846619 -184432935 - LTR16A LTR ERVL 0 450 316 289 280 80 13 chr6 4846662 4846812 -184432742 - LTR16A LTR ERVL -290 160 1 1539 240 109 46 chr6 4846907 4847556 -184431998 + L1MC4a LINE L1 7106 7802 -6 297 308 25 25 chr6 4848257 4848377 -184431177 - HERV16 LTR ERVL -1450 4314 4195 462 281 62 0 chr6 4849118 4849328 -184430226 - HERV16 LTR ERVL -3880 1116 894 227 139 23 0 chr6 4849973 4850016 -184429538 - LTR16A LTR ERVL -83 367 324 361 176 63 142 chr6 4850773 4850978 -184428576 + MER20 DNA MER1_type 31 219 0 2187 47 0 14 chr6 4852900 4853179 -184426375 + AluY SINE Alu 25 299 -12 1895 114 0 4 chr6 4855002 4855283 -184424271 - AluSc SINE Alu -16 293 14 773 98 98 24 chr6 4855290 4855413 -184424141 - AluSq/x SINE Alu -180 133 2 2058 110 0 0 chr6 4856054 4856346 -184423208 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr6 4856350 4856372 -184423182 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr6 4857963 4857991 -184421563 + AT_rich Low_complexity Low_complexity 1 28 0 260 259 126 44 chr6 4858820 4858955 -184420599 - MIR SINE MIR -41 221 76 499 261 113 53 chr6 4859237 4859555 -184419999 + L1ME4a LINE L1 5490 5826 -295 25 65 0 0 chr6 4860398 4860444 -184419110 + AT_rich Low_complexity Low_complexity 1 46 0 369 228 55 39 chr6 4860899 4861026 -184418528 - MIR3 SINE MIR -66 142 14 3782 237 64 19 chr6 4861679 4862858 -184416696 + L1M4 LINE L1 2570 3800 -2346 539 176 0 0 chr6 4862858 4862949 -184416605 + AluJ/FRAM SINE Alu 217 307 -5 3089 160 52 86 chr6 4862949 4863750 -184415804 + L1MB7 LINE L1 5392 6165 -19 406 287 63 33 chr6 4863787 4864288 -184415266 + L1MEc LINE L1 2102 2583 -3632 544 68 0 34 chr6 4864290 4864378 -184415176 + (GGAGAA)n Simple_repeat Simple_repeat 3 87 0 782 265 251 49 chr6 4864389 4864875 -184414679 + MLT1E LTR MaLR 10 593 0 447 52 0 0 chr6 4864906 4864964 -184414590 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 333 330 0 9 chr6 4865172 4865281 -184414273 - MIR SINE MIR -98 164 57 2547 58 0 0 chr6 4865390 4865698 -184413856 - AluY SINE Alu -3 308 1 1728 139 0 35 chr6 4866303 4866591 -184412963 + AluJb SINE Alu 1 278 -34 2304 70 0 0 chr6 4866769 4867067 -184412487 - AluY SINE Alu -9 302 5 269 270 14 0 chr6 4868112 4868186 -184411368 + (TG)n Simple_repeat Simple_repeat 1 75 0 608 248 56 47 chr6 4868205 4868419 -184411135 - L1ME1 LINE L1 -5 6161 5946 310 278 31 52 chr6 4869509 4869606 -184409948 + L1M4 LINE L1 5248 5342 -804 480 195 16 47 chr6 4869606 4869688 -184409866 + L1MB3 LINE L1 6058 6136 -47 768 179 0 8 chr6 4869688 4869822 -184409732 + FLAM_A SINE Alu 1 133 0 480 195 16 47 chr6 4869822 4869867 -184409687 + L1MB3 LINE L1 6136 6181 -2 23 54 0 0 chr6 4869867 4869904 -184409650 + AT_rich Low_complexity Low_complexity 1 37 0 2017 250 104 18 chr6 4869920 4870317 -184409237 + L1ME3A LINE L1 5290 5651 -519 1648 152 39 7 chr6 4870317 4870600 -184408954 + AluJo SINE Alu 1 292 -20 2017 250 104 18 chr6 4870600 4870988 -184408566 + L1ME3A LINE L1 5651 6152 -18 402 21 0 0 chr6 4870988 4871035 -184408519 + (TC)n Simple_repeat Simple_repeat 2 48 0 243 0 0 0 chr6 4871034 4871061 -184408493 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 2083 115 0 0 chr6 4871061 4871357 -184408197 - AluSg SINE Alu -14 296 1 1800 158 0 0 chr6 4871413 4871691 -184407863 - AluSx SINE Alu -34 278 1 1767 174 0 0 chr6 4871726 4872025 -184407529 + AluSx SINE Alu 1 299 -13 2179 156 5 22 chr6 4872656 4873027 -184406527 - MLT1A1 LTR MaLR 0 365 1 652 242 27 13 chr6 4873097 4873246 -184406308 + MIR SINE MIR 84 234 -28 195 42 0 0 chr6 4873282 4873306 -184406248 + (ATG)n Simple_repeat Simple_repeat 3 26 0 330 302 12 0 chr6 4873334 4873420 -184406134 - L2 LINE L2 -189 3083 2997 237 65 0 0 chr6 4873438 4873469 -184406085 + (A)n Simple_repeat Simple_repeat 1 31 0 195 146 55 109 chr6 4873609 4873664 -184405890 - L3 LINE CR1 -1090 487 436 1000 156 22 11 chr6 4874031 4874211 -184405343 - MLT1B LTR MaLR -1 389 208 273 225 14 14 chr6 4874255 4874326 -184405228 + L1ME3A LINE L1 6031 6101 -69 1289 156 100 26 chr6 4874326 4874400 -184405154 - MLT1B LTR MaLR -101 289 222 276 30 0 0 chr6 4874400 4874433 -184405121 + (TA)n Simple_repeat Simple_repeat 2 34 0 1563 108 0 0 chr6 4874433 4874647 -184404907 - AluSg/x SINE Alu -27 283 70 1289 156 100 26 chr6 4874647 4874840 -184404714 - MLT1B LTR MaLR -167 223 1 1112 181 45 0 chr6 4875463 4875684 -184403870 + L1MB3 LINE L1 5915 6145 -38 1074 159 125 4 chr6 4875689 4875921 -184403633 + AluJb SINE Alu 40 299 -13 2118 102 3 3 chr6 4875982 4876275 -184403279 + AluSx SINE Alu 1 293 -19 5434 104 1 5 chr6 4878505 4879275 -184400279 - L1PB2 LINE L1 0 6151 5385 1352 61 0 0 chr6 4879275 4879440 -184400114 - AluY SINE Alu 0 311 147 6437 184 7 16 chr6 4879440 4880795 -184398759 - L1PB2 LINE L1 -745 5401 4059 192 293 37 12 chr6 4881195 4881277 -184398277 + MIR SINE MIR 155 238 -24 495 33 0 0 chr6 4881505 4881566 -184397988 + (TC)n Simple_repeat Simple_repeat 1 61 0 468 0 0 0 chr6 4881565 4881617 -184397937 + (CA)n Simple_repeat Simple_repeat 1 52 0 * 702 172 15 1 chr6 4881927 4882070 -184397484 + L1 LINE L1 3607 3756 -2390 3131 147 8 0 chr6 4882581 4883065 -184396489 + L1 LINE L1 3742 4229 -1917 239 217 0 33 chr6 4883084 4883144 -184396410 - FRAM/FAM SINE Alu -109 57 1 2394 103 3 0 chr6 4883150 4883460 -184396094 - AluSx SINE Alu -1 311 1 749 118 118 33 chr6 4883463 4883589 -184395965 - L1MB4 LINE L1 -213 5967 5824 2877 169 75 51 chr6 4883589 4884299 -184395255 - LTR8A LTR ERV1 0 727 1 749 118 118 33 chr6 4884299 4884325 -184395229 - L1MB4 LINE L1 -356 5824 5802 1039 162 17 17 chr6 4884333 4884506 -184395048 + AluJo SINE Alu 85 257 -55 728 153 0 0 chr6 4884509 4884620 -184394934 + AluJb SINE Alu 198 308 -4 307 353 77 23 chr6 4884625 4884730 -184394824 + MIR SINE MIR 30 128 -134 1939 216 59 22 chr6 4884730 4885271 -184394283 - MER34B LTR ERV1 0 565 5 307 353 77 23 chr6 4885271 4885386 -184394168 + MIR SINE MIR 128 262 0 2371 82 0 3 chr6 4885757 4886051 -184393503 - AluSc SINE Alu -16 293 1 2509 78 0 0 chr6 4887424 4887732 -184391822 - AluY SINE Alu -3 308 1 4974 174 49 26 chr6 4888445 4889436 -184390118 + L1MC3 LINE L1 6687 7705 -80 279 0 0 0 chr6 4889436 4889467 -184390087 + (TG)n Simple_repeat Simple_repeat 2 32 0 4974 174 49 26 chr6 4889467 4889537 -184390017 + L1MC3 LINE L1 7705 7772 -13 1846 166 0 20 chr6 4889538 4889834 -184389720 - AluJo SINE Alu -22 290 1 1431 212 42 31 chr6 4889990 4890349 -184389205 - MLT1A2 LTR MaLR -11 363 1 4401 195 45 57 chr6 4891197 4892293 -184387261 - L1MD2 LINE L1 -22 6320 5238 4426 230 93 40 chr6 4892293 4892485 -184387069 - L1MD2 LINE L1 -1332 4797 4617 189 0 0 0 chr6 4892485 4892506 -184387048 + (CA)n Simple_repeat Simple_repeat 2 22 0 4426 230 93 40 chr6 4892506 4893532 -184386022 - L1MD2 LINE L1 -1512 4617 3467 1606 192 11 3 chr6 4893532 4893819 -184385735 - AluJo SINE Alu -23 289 1 4426 230 93 40 chr6 4893819 4894253 -184385301 - L1MD2 LINE L1 -2662 3467 3057 575 209 74 0 chr6 4894240 4894388 -184385166 - L1MD2 LINE L1 -3302 2827 2669 * 818 247 38 13 chr6 4894509 4894744 -184384810 - L1MD2 LINE L1 -3450 2679 2439 2413 233 106 22 chr6 4894748 4894782 -184384772 - L1MD2 LINE L1 -3876 2434 2404 2196 108 118 45 chr6 4894782 4895093 -184384461 + MSTA LTR MaLR 1 349 -79 1772 135 20 94 chr6 4895093 4895434 -184384120 + AluYb8 SINE Alu 1 316 -2 2196 108 118 45 chr6 4895434 4895519 -184384035 + MSTA LTR MaLR 349 426 -2 2413 233 106 22 chr6 4895519 4896297 -184383257 - L1MD2 LINE L1 -3906 2404 1554 351 239 104 33 chr6 4896291 4896577 -184382977 - L1MD2 LINE L1 -5088 1046 725 * 304 287 84 72 chr6 4896620 4896979 -184382575 - L1MD2 LINE L1 -5487 632 270 2273 23 0 0 chr6 4897181 4897442 -184382112 + L1PA4 LINE L1 5891 6151 -4 250 262 285 12 chr6 4897584 4897756 -184381798 + MIR SINE MIR 19 237 -25 22 0 0 0 chr6 4898095 4898117 -184381437 + AT_rich Low_complexity Low_complexity 1 22 0 1714 197 58 42 chr6 4899901 4900182 -184379372 + LTR40a LTR ERVL 82 374 -145 3279 151 30 0 chr6 4900182 4900681 -184378873 + MLT2B3 LTR ERVL 1 519 -35 261 0 0 0 chr6 4900681 4900710 -184378844 + (TCCA)n Simple_repeat Simple_repeat 2 30 0 3279 151 30 0 chr6 4900710 4900748 -184378806 + MLT2B3 LTR ERVL 519 554 0 1714 197 58 42 chr6 4900748 4900897 -184378657 + LTR40a LTR ERVL 374 519 0 21 0 0 0 chr6 4901615 4901636 -184377918 + AT_rich Low_complexity Low_complexity 1 21 0 2128 93 0 0 chr6 4902327 4902597 -184376957 - AluSc SINE Alu -4 305 36 2247 88 10 3 chr6 4903229 4903523 -184376031 - AluSx SINE Alu -16 296 1 180 0 0 0 chr6 4903526 4903546 -184376008 + (T)n Simple_repeat Simple_repeat 1 20 0 281 365 0 0 chr6 4903848 4904018 -184375536 + (CAAG)n Simple_repeat Simple_repeat 1 170 0 436 220 136 0 chr6 4904217 4904335 -184375219 + MIR SINE MIR 97 230 -32 2690 29 3 0 chr6 4906105 4906412 -184373142 + AluY SINE Alu 1 308 -3 23 78 0 0 chr6 4906789 4906840 -184372714 + GC_rich Low_complexity Low_complexity 1 51 0 1095 147 101 150 chr6 4908097 4908403 -184371151 + AluJo SINE Alu 2 292 -10 2207 105 7 3 chr6 4908457 4908752 -184370802 + AluSx SINE Alu 1 296 -16 600 298 31 28 chr6 4909376 4909698 -184369856 + L2 LINE L2 2454 2776 -538 230 261 14 14 chr6 4910027 4910096 -184369458 + L1P LINE L1 2749 2817 -3329 2485 83 0 13 chr6 4910113 4910426 -184369128 + AluSc SINE Alu 1 309 0 2215 109 0 0 chr6 4910918 4911235 -184368319 + AluSx SINE Alu 1 317 0 1937 161 73 3 chr6 4911241 4911582 -184367972 + MLT1A1 LTR MaLR 1 365 0 1964 151 3 7 chr6 4911762 4912053 -184367501 + AluJo SINE Alu 1 290 -22 199 276 143 9 chr6 4912428 4912533 -184367021 - MIR SINE MIR -11 251 133 895 136 11 68 chr6 4912725 4912901 -184366653 - AluJb SINE Alu -18 294 129 1659 165 81 9 chr6 4913104 4913230 -184366324 - L1MB8 LINE L1 0 6178 6063 1702 125 42 42 chr6 4913230 4913518 -184366036 - AluJo SINE Alu -18 294 7 1659 165 81 9 chr6 4913518 4913736 -184365818 - L1MB8 LINE L1 -115 6063 5809 2101 129 0 0 chr6 4913808 4914087 -184365467 - AluSg SINE Alu -19 291 13 529 107 0 0 chr6 4914193 4914277 -184365277 - Alu SINE Alu 0 309 226 225 0 0 0 chr6 4914885 4914910 -184364644 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 758 142 0 0 chr6 4914924 4915044 -184364510 + L1MB2 LINE L1 6012 6131 -40 1469 152 9 4 chr6 4915045 4915275 -184364279 + AluJb SINE Alu 1 231 -81 478 104 30 0 chr6 4915307 4915374 -184364180 + AluJb SINE Alu 224 292 -20 273 47 116 0 chr6 4915376 4915419 -184364135 + L1MB2 LINE L1 6122 6169 -2 2060 153 3 0 chr6 4916209 4916504 -184363050 - AluJb SINE Alu -16 296 1 1752 159 33 0 chr6 4916780 4917051 -184362503 - AluJb SINE Alu -30 282 3 1854 232 119 10 chr6 4917307 4917795 -184361759 - MLT1H LTR MaLR 0 549 9 844 210 17 6 chr6 4918481 4918657 -184360897 + MER5B DNA MER1_type 1 178 0 2551 231 83 11 chr6 4919107 4919942 -184359612 - L1 LINE L1 -2478 3668 2774 1883 142 31 14 chr6 4919951 4920239 -184359315 - AluSx SINE Alu -19 293 1 489 70 28 28 chr6 4920243 4920314 -184359240 - Charlie1 DNA MER1_type -2011 750 680 18616 126 22 55 chr6 4920534 4923844 -184355710 - L1P LINE L1 -2934 3212 12 707 251 97 9 chr6 4923857 4924267 -184355287 - L1ME LINE L1 -676 5486 5045 955 143 0 0 chr6 4924403 4924536 -184355018 - FLAM_C SINE Alu -10 133 1 1592 179 98 29 chr6 4924539 4924795 -184354759 - L1MA4 LINE L1 -254 6046 5809 252 0 0 0 chr6 4924795 4924823 -184354731 + (TG)n Simple_repeat Simple_repeat 2 29 0 1592 179 98 29 chr6 4924823 4924856 -184354698 - L1MA4 LINE L1 -491 5809 5780 1697 149 0 0 chr6 4924856 4925098 -184354456 - AluSx SINE Alu -70 242 1 1592 179 98 29 chr6 4925098 4925186 -184354368 - L1MA4 LINE L1 -520 5780 5642 1524 190 104 41 chr6 4925189 4925262 -184354292 - HERVL74 LTR ERVL -4071 1614 1547 1887 148 0 17 chr6 4925262 4925589 -184353965 - AluSx SINE Alu 0 312 1 1524 190 104 41 chr6 4925589 4925930 -184353624 - HERVL74 LTR ERVL -4138 1547 1174 24 0 0 0 chr6 4925930 4925954 -184353600 + AT_rich Low_complexity Low_complexity 1 24 0 1548 158 17 45 chr6 4926202 4926524 -184353030 - AluJb SINE Alu 0 315 2 1955 135 7 4 chr6 4927895 4928176 -184351378 + AluJo SINE Alu 1 282 -30 192 40 0 0 chr6 4928181 4928206 -184351348 + (GA)n Simple_repeat Simple_repeat 2 26 0 241 156 16 16 chr6 4928206 4928245 -184351309 + GA-rich Low_complexity Low_complexity 3 65 0 200 250 0 59 chr6 4929860 4929928 -184349626 + MIR3 SINE MIR 114 177 -31 2082 72 7 65 chr6 4929947 4930151 -184349403 - AluSx SINE Alu 0 323 142 2093 129 0 19 chr6 4930151 4930469 -184349085 - AluSx SINE Alu 0 312 1 2082 72 7 65 chr6 4930469 4930596 -184348958 - AluSx SINE Alu -181 142 9 211 316 0 42 chr6 4931079 4931174 -184348380 - L2 LINE L2 -533 2781 2691 2192 97 3 7 chr6 4931195 4931484 -184348070 + AluSx SINE Alu 1 288 -24 225 0 0 0 chr6 4931484 4931509 -184348045 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 257 111 0 0 chr6 4931509 4931545 -184348009 + Alu SINE Alu 252 287 -14 342 67 0 0 chr6 4931545 4931590 -184347964 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2508 144 18 81 chr6 4931685 4931735 -184347819 + L1MB7 LINE L1 5647 5699 -485 1947 188 14 3 chr6 4931735 4932096 -184347458 + MLT1A1 LTR MaLR 1 365 0 2508 144 18 81 chr6 4932096 4932599 -184346955 + L1MB7 LINE L1 5699 6165 -19 1500 181 28 11 chr6 4932633 4932920 -184346634 + AluJo SINE Alu 15 306 -6 181 336 105 14 chr6 4932937 4933080 -184346474 - L2 LINE L2 -711 2603 2448 320 317 19 0 chr6 4933863 4933967 -184345587 + MER3 DNA MER1_type 1 106 -103 912 144 139 16 chr6 4934504 4934698 -184344856 + MER20 DNA MER1_type 2 219 0 212 273 18 109 chr6 4935751 4935861 -184343693 + MIR3 SINE MIR 97 196 -12 283 244 12 12 chr6 4935913 4935999 -184343555 + CT-rich Low_complexity Low_complexity 2 87 0 205 217 116 74 chr6 4936562 4936751 -184342803 + L2 LINE L2 2555 2751 -563 1980 230 23 7 chr6 4936823 4937266 -184342288 - MER82 DNA MER2_type 0 653 204 2437 141 53 2 chr6 4937399 4937810 -184341744 + MSTB1 LTR MaLR 1 432 0 270 0 0 0 chr6 4937818 4937848 -184341706 + (T)n Simple_repeat Simple_repeat 1 30 0 544 262 28 14 chr6 4938162 4938303 -184341251 - MER82 DNA MER2_type -510 143 1 233 146 21 0 chr6 4938607 4938655 -184340899 + CT-rich Low_complexity Low_complexity 3 51 0 218 184 0 0 chr6 4938815 4938853 -184340701 + (TATG)n Simple_repeat Simple_repeat 3 40 0 188 290 48 0 chr6 4938958 4939020 -184340534 + L2 LINE L2 3239 3303 -10 519 237 9 0 chr6 4940367 4940481 -184339073 - L2 LINE L2 -3 3310 3196 693 279 44 24 chr6 4940800 4941209 -184338345 + L1M4 LINE L1 4596 5012 -1134 1299 125 36 10 chr6 4941209 4941401 -184338153 + AluJo SINE Alu 86 282 -30 453 115 0 0 chr6 4941406 4941493 -184338061 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 970 128 0 0 chr6 4941517 4941650 -184337904 + FLAM_C SINE Alu 1 133 0 1251 153 8 16 chr6 4941650 4941892 -184337662 + L1MA4 LINE L1 6055 6294 -6 676 217 31 25 chr6 4941893 4942054 -184337500 + HERVL74 LTR ERVL 1610 1771 -3914 1101 111 6 19 chr6 4942113 4942275 -184337279 + AluSg/x SINE Alu 132 291 -18 1386 194 23 0 chr6 4943432 4943690 -184335864 + HERVL74 LTR ERVL 1765 2028 -3657 * 2387 194 52 61 chr6 4943678 4944331 -184335223 + HERVL74 LTR ERVL 4615 5261 -424 845 250 23 5 chr6 4944361 4944577 -184334977 + HERVL74 LTR ERVL 5376 5595 -90 1890 158 105 3 chr6 4944804 4945177 -184334377 + MER74A LTR ERVL 121 531 -27 2415 86 0 6 chr6 4945210 4945525 -184334029 - AluSq SINE Alu 0 313 1 294 211 0 0 chr6 4946171 4946223 -184333331 - MLT1H1 LTR MaLR -3 592 541 2444 158 10 2 chr6 4946223 4946640 -184332914 + L1MB3 LINE L1 5659 6078 -105 772 229 70 111 chr6 4947217 4947247 -184332307 - MLT1H1 LTR MaLR -37 518 488 2334 59 0 0 chr6 4947247 4947518 -184332036 - AluY SINE Alu -18 293 23 772 229 70 111 chr6 4947518 4947906 -184331648 - MLT1H1 LTR MaLR -67 488 106 1919 150 0 7 chr6 4947906 4948199 -184331355 + AluJb SINE Alu 5 295 -17 772 229 70 111 chr6 4948199 4948301 -184331253 - MLT1H1 LTR MaLR -449 106 1 428 247 0 22 chr6 4948377 4948466 -184331088 - MER81 DNA DNA -27 87 1 378 0 0 0 chr6 4949385 4949427 -184330127 + (TG)n Simple_repeat Simple_repeat 2 43 0 1200 157 47 120 chr6 4949431 4949730 -184329824 - AluJo SINE Alu -35 277 1 211 250 11 91 chr6 4950629 4950717 -184328837 + MIR SINE MIR 92 144 -64 2245 119 0 0 chr6 4950765 4951060 -184328494 - AluSg SINE Alu -15 295 1 8893 161 122 33 chr6 4951157 4952765 -184326789 + L1M4c LINE L1 31 1844 -4540 2203 143 41 48 chr6 4952765 4953200 -184326354 - MSTB1 LTR MaLR 0 432 1 8893 161 122 33 chr6 4953200 4953550 -184326004 + L1M4c LINE L1 1844 2162 -4222 745 183 0 29 chr6 4953553 4953690 -184325864 - FLAM_C SINE Alu 0 133 1 729 101 36 36 chr6 4953719 4953858 -184325696 + L1MB3 LINE L1 6044 6182 -1 220 277 24 12 chr6 4954492 4954575 -184324979 + GA-rich Low_complexity Low_complexity 1 84 0 1074 153 0 28 chr6 4954577 4954754 -184324800 + FRAM SINE Alu 5 176 0 442 343 78 0 chr6 4955292 4955511 -184324043 - MIR SINE MIR -7 255 20 5586 110 52 5 chr6 4955661 4956494 -184323060 + MER4D LTR ERV1 1 872 0 262 129 32 32 chr6 4957021 4957083 -184322471 + CT-rich Low_complexity Low_complexity 1 62 0 840 153 98 37 chr6 4957092 4957255 -184322299 - FAM SINE Alu 0 175 3 4126 198 41 13 chr6 4957262 4958166 -184321388 - Charlie1a DNA MER1_type -268 1187 259 738 205 12 58 chr6 4958170 4958341 -184321213 - Charlie1a DNA MER1_type -1291 164 2 2287 89 13 7 chr6 4958527 4958829 -184320725 + AluSx SINE Alu 1 304 -8 1920 112 45 17 chr6 4958857 4959144 -184320410 - AluJo SINE Alu -17 295 1 1815 179 0 0 chr6 4960151 4960453 -184319101 + AluJo SINE Alu 1 302 -10 521 216 181 15 chr6 4960695 4960894 -184318660 + LTR48 LTR ERV1 490 721 -66 1029 152 0 18 chr6 4960894 4961058 -184318496 - FRAM SINE Alu -16 160 1 512 120 13 0 chr6 4961058 4961133 -184318421 + LTR49 LTR ERV1 520 595 0 496 283 122 5 chr6 4961143 4961348 -184318206 - L1MC/D LINE L1 -2021 5787 5559 1868 136 0 85 chr6 4961589 4961920 -184317634 - AluSx SINE Alu -9 303 1 571 189 28 56 chr6 4962411 4962554 -184317000 + Tigger8 DNA MER2_type 154 292 -374 298 280 93 47 chr6 4962689 4962925 -184316629 + L1MEd LINE L1 496 742 -5377 1207 141 6 0 chr6 4963168 4963345 -184316209 - AluJo SINE Alu -3 309 132 281 189 44 0 chr6 4963346 4963436 -184316118 + (TA)n Simple_repeat Simple_repeat 2 95 0 660 122 122 0 chr6 4963437 4963544 -184316010 - FLAM_C SINE Alu -13 120 1 641 208 63 35 chr6 4965445 4965665 -184313889 - L1MC2 LINE L1 -1 6343 6159 714 194 0 16 chr6 4965667 4965796 -184313758 - AluJo SINE Alu -184 128 2 2397 154 67 29 chr6 4965803 4966393 -184313161 - L1MC2 LINE L1 -2 6298 5721 48 43 0 0 chr6 4966397 4966466 -184313088 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr6 4968134 4968155 -184311399 + AT_rich Low_complexity Low_complexity 1 21 0 1527 207 200 18 chr6 4968320 4968774 -184310780 - MLT1F LTR MaLR -3 539 3 558 53 13 0 chr6 4969813 4969888 -184309666 + L1PA5 LINE L1 6079 6154 0 2255 98 6 3 chr6 4969894 4970221 -184309333 - HSMAR2 DNA Mariner -970 332 5 761 171 32 21 chr6 4970282 4970469 -184309085 - Charlie1 DNA MER1_type -7 2754 2566 517 228 19 84 chr6 4970509 4970546 -184309008 + L2 LINE L2 3113 3151 -162 197 33 33 0 chr6 4970546 4970576 -184308978 + (TA)n Simple_repeat Simple_repeat 2 32 0 2249 92 14 3 chr6 4970576 4970871 -184308683 - AluSc SINE Alu -11 298 1 517 228 19 84 chr6 4970871 4971047 -184308507 + L2 LINE L2 3149 3313 0 408 261 96 50 chr6 4971083 4971282 -184308272 - MIR SINE MIR -26 236 29 314 252 36 58 chr6 4971468 4971607 -184307947 + L1ME4a LINE L1 5978 6113 -8 1653 182 27 3 chr6 4971686 4971983 -184307571 + AluJo SINE Alu 1 304 -8 2194 103 7 3 chr6 4972003 4972295 -184307259 + AluSg SINE Alu 2 294 -16 21 0 0 0 chr6 4972427 4972448 -184307106 + AT_rich Low_complexity Low_complexity 1 21 0 438 236 0 0 chr6 4972533 4972622 -184306932 - MER96B DNA MER1_type? 0 417 329 564 178 0 0 chr6 4972635 4972742 -184306812 + (TG)n Simple_repeat Simple_repeat 2 108 0 2074 101 0 24 chr6 4972750 4973037 -184306517 - AluSx SINE Alu -32 280 1 4725 88 5 0 chr6 4973037 4973660 -184305894 - L1PA11 LINE L1 -135 6039 5414 684 89 0 0 chr6 4973669 4973759 -184305795 - AluSp/q SINE Alu -11 302 213 685 159 119 99 chr6 4973865 4974117 -184305437 - MER69 DNA AcHobo -5 2521 2265 1606 126 56 34 chr6 4974186 4974455 -184305099 + AluSx SINE Alu 1 275 -37 31 0 0 0 chr6 4974456 4974487 -184305067 + AT_rich Low_complexity Low_complexity 1 31 0 255 133 22 44 chr6 4974571 4974706 -184304848 + (TA)n Simple_repeat Simple_repeat 1 132 0 240 283 152 0 chr6 4974849 4974987 -184304567 - MLT1E LTR MaLR -398 195 37 472 277 32 27 chr6 4975004 4975313 -184304241 - MER69 DNA AcHobo -2080 446 95 225 0 0 0 chr6 4975490 4975515 -184304039 + (T)n Simple_repeat Simple_repeat 1 25 0 1027 138 27 43 chr6 4975522 4975710 -184303844 + Tigger1 DNA MER2_type 1625 1809 -609 567 53 0 0 chr6 4975716 4975792 -184303762 - L1PA6 LINE L1 0 6154 6079 195 162 0 0 chr6 4975872 4975909 -184303645 + (ATGGTG)n Simple_repeat Simple_repeat 5 41 0 2610 133 36 2 chr6 4975929 4976343 -184303211 + MSTA LTR MaLR 1 428 0 237 79 0 0 chr6 4976835 4976873 -184302681 - L1MB3 LINE L1 -2 6181 6144 1959 138 0 26 chr6 4977034 4977338 -184302216 - AluJb SINE Alu -16 296 1 268 317 62 21 chr6 4977453 4977598 -184301956 + MIR SINE MIR 20 170 -92 266 344 61 0 chr6 4977760 4977891 -184301663 + MER20 DNA MER1_type 55 193 -26 291 302 128 23 chr6 4977966 4978138 -184301416 - MLT1L LTR MaLR -204 411 222 343 299 107 21 chr6 4979399 4979586 -184299968 + MIR SINE MIR 16 218 -44 30 27 0 0 chr6 4980011 4980048 -184299506 + AT_rich Low_complexity Low_complexity 1 37 0 1611 212 48 75 chr6 4980068 4980625 -184298929 - MER34 LTR ERV1 0 542 1 510 191 296 35 chr6 4981936 4982135 -184297419 + MLT1G1 LTR MaLR 340 595 0 402 281 60 6 chr6 4982524 4982691 -184296863 + L2 LINE L2 1986 2161 -1153 272 300 0 12 chr6 4982705 4982785 -184296769 + MER21B LTR ERV1 1 79 -784 1257 232 88 20 chr6 4982876 4983443 -184296111 + MER21B LTR ERV1 98 834 -97 361 385 78 19 chr6 4983447 4983860 -184295694 + L2 LINE L2 2334 2770 -544 342 190 25 13 chr6 4984193 4984272 -184295282 - MER96 DNA MER1_type? -90 85 6 407 131 131 164 chr6 4984989 4985081 -184294473 + MER5A DNA MER1_type 13 98 -91 665 172 0 8 chr6 4985081 4985203 -184294351 + FLAM_A SINE Alu 1 121 -12 407 131 131 164 chr6 4985203 4985293 -184294261 + MER5A DNA MER1_type 98 189 0 21 71 0 0 chr6 4986280 4986322 -184293232 + GC_rich Low_complexity Low_complexity 1 42 0 1428 189 23 49 chr6 4989076 4989173 -184290381 + MER58B DNA MER1_type 1 99 -2321 2358 105 3 6 chr6 4989173 4989487 -184290067 - AluSq SINE Alu 0 313 1 1428 189 23 49 chr6 4989487 4989739 -184289815 + MER58B DNA MER1_type 99 341 0 21 36 0 0 chr6 4990422 4990450 -184289104 + AT_rich Low_complexity Low_complexity 1 28 0 293 0 27 0 chr6 4991108 4991145 -184288409 + (CA)n Simple_repeat Simple_repeat 2 39 0 2170 104 0 27 chr6 4993522 4993819 -184285735 + AluSg SINE Alu 1 289 -21 1849 180 0 7 chr6 4995292 4995598 -184283956 + AluJo SINE Alu 1 304 -8 1415 150 42 0 chr6 4995930 4996217 -184283337 + L1MA4 LINE L1 5997 6295 -5 427 225 167 8 chr6 4996238 4996358 -184283196 + MER20 DNA MER1_type 50 188 -31 2397 145 13 3 chr6 4996360 4996752 -184282802 - MER57A LTR ERV1 0 403 8 2143 118 0 7 chr6 4996788 4997107 -184282447 + AluSx SINE Alu 1 317 0 615 225 13 13 chr6 4997112 4997263 -184282291 + L1MC4a LINE L1 7657 7807 -1 1912 167 10 0 chr6 4997304 4997598 -184281956 + AluJo SINE Alu 5 301 -11 263 310 80 37 chr6 4997675 4997862 -184281692 + MIR SINE MIR 16 210 -52 1577 155 0 0 chr6 4998101 4998346 -184281208 - MSTC LTR MaLR -2 426 182 498 103 0 0 chr6 4998361 4998429 -184281125 - AluJ/FRAM SINE Alu -27 285 218 1759 158 7 31 chr6 4998451 4998743 -184280811 - AluJo SINE Alu -27 285 1 834 143 7 7 chr6 4998748 4998895 -184280659 - MSTC LTR MaLR -281 147 1 640 184 8 16 chr6 4999090 4999215 -184280339 - FLAM_A SINE Alu -9 124 1 504 245 123 0 chr6 4999578 4999733 -184279821 + L1ME LINE L1 5566 5739 -431 1665 164 0 18 chr6 5000299 5000475 -184279079 - AluJb SINE Alu -16 296 125 360 43 0 0 chr6 5000475 5000521 -184279033 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1665 164 0 18 chr6 5000521 5000618 -184278936 - AluJb SINE Alu -187 125 28 779 167 0 0 chr6 5000702 5000834 -184278720 - FLAM_C SINE Alu 0 133 2 386 232 104 16 chr6 5000836 5000961 -184278593 - MIR SINE MIR -112 150 15 463 304 87 11 chr6 5002472 5002656 -184276898 - MIR SINE MIR -6 256 59 217 227 0 0 chr6 5002761 5002805 -184276749 - MIR SINE MIR -114 94 51 1319 177 92 44 chr6 5002891 5003185 -184276369 - AluJo SINE Alu -4 308 1 2193 106 7 13 chr6 5004723 5005026 -184274528 - AluSg SINE Alu -7 303 3 2085 144 0 3 chr6 5005370 5005668 -184273886 - AluJb SINE Alu -15 297 1 194 257 9 64 chr6 5005859 5005968 -184273586 + L2 LINE L2 2426 2528 -786 241 279 25 0 chr6 5006199 5006278 -184273276 - MLT1H LTR MaLR 0 549 469 2276 94 0 3 chr6 5006623 5006933 -184272621 + AluSx SINE Alu 1 309 0 352 333 129 29 chr6 5007013 5007392 -184272162 + L2 LINE L2 2856 3272 0 2033 82 78 4 chr6 5008838 5009107 -184270447 + AluSg SINE Alu 1 289 -21 193 326 27 82 chr6 5009559 5009743 -184269811 - MER5B DNA MER1_type 0 178 5 360 222 25 0 chr6 5009810 5009891 -184269663 - MER5A DNA MER1_type -82 107 25 291 241 25 0 chr6 5011929 5012008 -184267546 - MER5A DNA MER1_type -100 89 9 390 255 221 7 chr6 5012550 5012699 -184266855 + L3 LINE CR1 1392 1572 -5 291 245 116 54 chr6 5012860 5013007 -184266547 + MIR3 SINE MIR 41 196 -12 252 237 96 74 chr6 5013335 5013470 -184266084 + L2 LINE L2 3133 3270 -2 1855 132 55 4 chr6 5014249 5014522 -184265032 + AluSg SINE Alu 5 291 -19 915 129 0 0 chr6 5014826 5014958 -184264596 - FLAM_A SINE Alu -1 132 1 814 255 45 52 chr6 5015250 5015517 -184264037 + MLT1J LTR MaLR 243 507 -4 1550 58 44 26 chr6 5015732 5015958 -184263596 + MER30 DNA MER1_type 1 230 0 796 273 124 12 chr6 5015990 5016393 -184263161 - L1ME4a LINE L1 -118 6003 5556 215 243 0 57 chr6 5017084 5017154 -184262400 + MIR SINE MIR 184 249 -13 2323 77 28 0 chr6 5018367 5018653 -184260901 + AluSc SINE Alu 1 294 -15 1024 160 0 0 chr6 5018825 5018975 -184260579 + FAM SINE Alu 12 161 -24 1968 137 0 27 chr6 5019188 5019509 -184260045 - AluSx SINE Alu 0 313 1 2076 147 3 10 chr6 5020597 5020911 -184258643 + AluSx SINE Alu 1 312 0 2051 122 21 7 chr6 5021000 5021287 -184258267 - AluSg SINE Alu -19 291 1 816 137 24 0 chr6 5021465 5021589 -184257965 - LTR12 LTR ERV1 -229 485 359 280 236 0 0 chr6 5021589 5021661 -184257893 - LTR30 LTR ERV1 -98 624 553 1478 135 23 23 chr6 5021662 5021964 -184257590 - LTR12 LTR ERV1 -406 2032 55 278 211 0 0 chr6 5021964 5022016 -184257538 - LTR30 LTR ERV1 -670 52 1 402 191 0 0 chr6 5025405 5025473 -184254081 - AluJ/FLAM SINE Alu -243 69 2 200 289 24 24 chr6 5025882 5025965 -184253589 - MER5B DNA MER1_type -74 104 22 200 261 118 67 chr6 5025982 5026101 -184253453 + L2 LINE L2 3102 3226 -46 190 299 26 26 chr6 5026255 5026332 -184253222 + L2 LINE L2 2678 2754 -560 2461 159 30 13 chr6 5027578 5028049 -184251505 + L1MB7 LINE L1 5645 6123 -61 2154 119 14 0 chr6 5028049 5028342 -184251212 - AluSx SINE Alu -15 297 1 993 113 0 0 chr6 5028344 5028477 -184251077 - AluJb SINE Alu -179 133 1 262 143 79 0 chr6 5028477 5028540 -184251014 + L1MB8 LINE L1 6111 6178 0 1005 186 64 25 chr6 5028613 5028893 -184250661 + MER33 DNA MER1_type 31 321 -3 691 217 7 0 chr6 5028999 5029151 -184250403 - L1MD2 LINE L1 -15 6344 6192 2093 200 47 12 chr6 5030335 5030821 -184248733 - MLT1D LTR MaLR 0 505 3 827 173 0 0 chr6 5032510 5032643 -184246911 + FLAM_C SINE Alu 1 133 0 228 198 151 47 chr6 5032893 5032979 -184246575 + L1ME LINE L1 5801 5895 -226 214 336 124 46 chr6 5033288 5033505 -184246049 - MIR SINE MIR -11 251 18 195 42 0 0 chr6 5033506 5033530 -184246024 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 497 270 68 0 chr6 5034565 5034694 -184244860 - MER5B DNA MER1_type 0 178 34 2893 174 56 18 chr6 5034694 5035298 -184244256 - L1MB5 LINE L1 -6 6168 5542 497 270 68 0 chr6 5035298 5035331 -184244223 - MER5B DNA MER1_type -144 34 5 565 221 164 64 chr6 5035385 5035856 -184243698 + L1MC5 LINE L1 7398 7915 -46 2874 173 50 4 chr6 5036835 5037380 -184242174 - L1MB3 LINE L1 -10 6173 5604 411 286 160 9 chr6 5037487 5037700 -184241854 + MIR SINE MIR 6 250 -12 2916 182 18 2 chr6 5037920 5038470 -184241084 - L1MB7 LINE L1 -9 6175 5617 2055 149 0 9 chr6 5039294 5039609 -184239945 + AluJb SINE Alu 1 312 0 284 321 51 36 chr6 5040098 5040294 -184239260 - MIR SINE MIR 0 262 64 1600 152 57 4 chr6 5040626 5040889 -184238665 + MER57A LTR ERV1 1 277 -126 1001 138 33 0 chr6 5040929 5041081 -184238473 - AluJb SINE Alu -11 301 145 1552 142 24 0 chr6 5041087 5041334 -184238220 + AluJb SINE Alu 44 296 -16 696 202 8 0 chr6 5041335 5041464 -184238090 + MER57A LTR ERV1 274 403 0 340 125 0 31 chr6 5041825 5041889 -184237665 + L1MB4 LINE L1 6119 6180 0 307 238 89 0 chr6 5042388 5042489 -184237065 + MIR3 SINE MIR 67 176 -32 189 337 22 11 chr6 5042659 5042751 -184236803 - MIR3 SINE MIR -12 196 104 264 291 93 0 chr6 5042941 5043027 -184236527 - MIR3 SINE MIR -52 156 63 1135 218 201 43 chr6 5043193 5043661 -184235893 + MLT1G LTR MaLR 36 577 -13 2385 67 40 0 chr6 5045448 5045747 -184233807 + AluY SINE Alu 1 311 0 285 288 0 0 chr6 5046462 5046535 -184233019 - MIR SINE MIR -86 176 104 213 39 0 0 chr6 5046972 5046998 -184232556 + (CATTC)n Simple_repeat Simple_repeat 1 26 0 212 242 16 121 chr6 5047466 5047590 -184231964 - MIR SINE MIR -108 154 44 302 310 37 43 chr6 5047681 5047868 -184231686 + MLT1L LTR MaLR 105 290 -325 198 0 0 0 chr6 5049755 5049777 -184229777 + (TC)n Simple_repeat Simple_repeat 2 23 0 258 226 70 50 chr6 5050487 5050618 -184228936 - MIR SINE MIR -63 145 13 474 228 174 11 chr6 5051486 5051670 -184227884 + MIR SINE MIR 47 260 -2 2340 89 0 13 chr6 5052162 5052475 -184227079 - AluSc SINE Alu 0 309 1 430 300 80 34 chr6 5052714 5052951 -184226603 + MIR SINE MIR 2 249 -13 271 302 70 31 chr6 5053031 5053160 -184226394 + L2 LINE L2 3179 3312 -1 348 208 56 83 chr6 5053189 5053333 -184226221 - MIR3 SINE MIR -2 206 67 1798 150 25 0 chr6 5054196 5054482 -184225072 - AluSx SINE Alu -18 294 2 257 234 26 13 chr6 5054607 5054684 -184224870 + MIR SINE MIR 83 160 -102 2412 66 0 25 chr6 5055627 5055946 -184223608 + AluY SINE Alu 1 311 0 197 253 121 24 chr6 5055950 5056033 -184223521 - MIR SINE MIR -88 120 30 2083 123 7 3 chr6 5056171 5056473 -184223081 - AluSx SINE Alu -9 303 1 189 195 0 0 chr6 5059144 5059185 -184220369 + GA-rich Low_complexity Low_complexity 4 44 0 330 298 8 24 chr6 5059204 5059328 -184220226 + (TATG)n Simple_repeat Simple_repeat 2 123 0 2062 134 17 3 chr6 5059566 5059865 -184219689 - AluJo SINE Alu -9 303 1 267 255 37 85 chr6 5060436 5060624 -184218930 - L2 LINE L2 -1260 2054 1876 2003 91 53 138 chr6 5061449 5061846 -184217708 + THE1B LTR MaLR 2 364 0 29 47 0 0 chr6 5062233 5062276 -184217278 + AT_rich Low_complexity Low_complexity 1 43 0 204 261 0 0 chr6 5063286 5063332 -184216222 + MER5B DNA MER1_type 108 153 -25 303 136 0 0 chr6 5063566 5063625 -184215929 + (GA)n Simple_repeat Simple_repeat 2 60 0 1642 289 77 24 chr6 5063938 5064713 -184214841 - L1M LINE L1 -754 5392 4587 2078 102 53 0 chr6 5064713 5064998 -184214556 - AluSx SINE Alu -12 300 1 1642 289 77 24 chr6 5064998 5065092 -184214462 - L1M LINE L1 -1559 4587 4499 * 1884 251 93 29 chr6 5065090 5065775 -184213779 + L1ME3A LINE L1 5375 6103 -67 2367 106 0 0 chr6 5065778 5066080 -184213474 + AluSx SINE Alu 1 302 -10 2315 112 0 6 chr6 5066621 5066935 -184212619 - AluSx SINE Alu 0 312 1 24 91 0 0 chr6 5067106 5067172 -184212382 + AT_rich Low_complexity Low_complexity 1 66 0 183 203 95 14 chr6 5067677 5067751 -184211803 - MIR SINE MIR -71 191 112 442 242 11 0 chr6 5068019 5068110 -184211444 - AluJ/FLAM SINE Alu -219 93 2 1938 237 124 61 chr6 5069023 5069977 -184209577 + L1MC4 LINE L1 6891 7904 -138 234 176 59 0 chr6 5070043 5070111 -184209443 + L1MC4 LINE L1 7931 8002 -40 697 197 0 23 chr6 5070188 5070320 -184209234 - FLAM_A SINE Alu -4 129 1 307 244 122 0 chr6 5070594 5070676 -184208878 + MER82 DNA MER2_type 556 647 -6 252 0 0 0 chr6 5071575 5071603 -184207951 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 930 70 0 0 chr6 5071606 5071720 -184207834 - AluSg/x SINE Alu -25 285 172 475 265 111 17 chr6 5071840 5072021 -184207533 + L1ME LINE L1 5585 5782 -339 1039 245 119 14 chr6 5076690 5077160 -184202394 + MLT1G LTR MaLR 1 548 -42 2375 102 0 0 chr6 5077160 5077455 -184202099 - AluSg SINE Alu -15 295 1 431 300 50 7 chr6 5079112 5079252 -184200302 + L2 LINE L2 3119 3264 -8 429 205 32 3 chr6 5079259 5079430 -184200124 - MARNA DNA Mariner -197 389 161 21 0 0 0 chr6 5079539 5079560 -184199994 + AT_rich Low_complexity Low_complexity 1 21 0 2387 80 30 0 chr6 5079624 5079926 -184199628 + AluSx SINE Alu 1 311 -1 297 125 0 0 chr6 5080135 5080191 -184199363 + (A)n Simple_repeat Simple_repeat 1 56 0 283 127 0 18 chr6 5080245 5080300 -184199254 - L1MB4 LINE L1 0 6180 6127 3231 151 21 36 chr6 5080321 5080937 -184198617 - L1MB3 LINE L1 0 6183 5577 388 296 161 23 chr6 5082848 5083108 -184196446 + L2 LINE L2 2154 2449 -865 1265 155 33 0 chr6 5084928 5085141 -184194413 + L1MA8 LINE L1 6062 6281 -10 21 36 0 0 chr6 5085634 5085662 -184193892 + AT_rich Low_complexity Low_complexity 1 28 0 321 273 152 0 chr6 5085798 5085897 -184193657 - L2 LINE L2 0 3272 3159 207 100 0 0 chr6 5086296 5086326 -184193228 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 397 243 135 9 chr6 5086721 5086832 -184192722 - MIR SINE MIR -130 132 8 244 232 73 66 chr6 5087545 5087696 -184191858 + L1PA6 LINE L1 4897 5048 -1098 2278 112 0 0 chr6 5087795 5088091 -184191463 + AluSx SINE Alu 2 297 -15 2375 172 103 4 chr6 5088370 5088859 -184190695 + L1PA6 LINE L1 5603 6154 0 324 269 15 75 chr6 5088859 5088993 -184190561 + L1MC4a LINE L1 5811 5936 -1872 1513 157 71 31 chr6 5089159 5089282 -184190272 + AluJb SINE Alu 1 118 -194 204 97 0 0 chr6 5089282 5089313 -184190241 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1513 157 71 31 chr6 5089313 5089483 -184190071 + AluJb SINE Alu 118 306 -6 522 251 199 9 chr6 5089646 5089857 -184189697 + MIR SINE MIR 12 262 0 1835 137 18 7 chr6 5089868 5090145 -184189409 - AluJb SINE Alu -24 288 9 312 328 12 12 chr6 5090350 5090521 -184189033 + (TTAGGG)n Simple_repeat Simple_repeat 3 173 0 25 51 0 0 chr6 5091533 5091572 -184187982 + AT_rich Low_complexity Low_complexity 1 39 0 691 235 133 0 chr6 5091675 5091841 -184187713 + Tigger3(Golem) DNA MER2_type 1 188 -2841 228 313 137 16 chr6 5092107 5092356 -184187198 + L1ME LINE L1 5617 5895 -226 1243 244 217 6 chr6 5092725 5093200 -184186354 + L1MC4 LINE L1 7154 7728 -314 2227 101 7 0 chr6 5093836 5094132 -184185422 + AluSx SINE Alu 1 298 -14 378 93 0 0 chr6 5095115 5095169 -184184385 - MLT2D LTR ERVL 0 414 361 210 273 91 0 chr6 5095595 5095661 -184183893 + MIR SINE MIR 119 190 -72 1148 137 6 0 chr6 5095819 5095980 -184183574 - FRAM SINE Alu -4 162 1 269 303 18 55 chr6 5096050 5096215 -184183339 - Charlie7 DNA MER1_type 0 2612 2454 1931 115 3 78 chr6 5096421 5096752 -184182802 + AluSx SINE Alu 1 306 -6 343 235 12 71 chr6 5096887 5096972 -184182582 + L2 LINE L2 3132 3211 -61 413 301 92 5 chr6 5097051 5097257 -184182297 - MIR SINE MIR -3 259 36 363 273 56 37 chr6 5097496 5097657 -184181897 + MIR SINE MIR 13 176 -86 2287 100 0 10 chr6 5098484 5098795 -184180759 + AluSg1 SINE Alu 1 308 -1 2099 94 3 82 chr6 5098983 5099314 -184180240 + AluSq SINE Alu 2 306 -7 3779 147 75 22 chr6 5099948 5100641 -184178913 + L1MB8 LINE L1 5444 6173 -5 629 224 141 0 chr6 5101809 5101965 -184177589 - MER5B DNA MER1_type 0 178 1 23 54 0 0 chr6 5102089 5102126 -184177428 + AT_rich Low_complexity Low_complexity 1 37 0 374 233 20 130 chr6 5102933 5103079 -184176475 + MIR SINE MIR 20 149 -59 459 322 93 14 chr6 5105055 5105269 -184174285 - MIR SINE MIR -13 249 19 384 211 44 26 chr6 5105506 5105620 -184173934 + MER4C LTR ERV1 1 116 -349 810 220 39 35 chr6 5105639 5105912 -184173642 + MER4C LTR ERV1 278 465 0 351 210 210 14 chr6 5107298 5107436 -184172118 - MIR3 SINE MIR -7 201 37 267 313 111 14 chr6 5107796 5107940 -184171614 + MIR SINE MIR 77 234 -28 218 314 110 25 chr6 5108010 5108128 -184171426 - MIR3 SINE MIR -68 140 13 2015 136 0 10 chr6 5108864 5109158 -184170396 - AluSx SINE Alu -5 307 17 363 303 18 9 chr6 5110058 5110167 -184169387 - MIR3 SINE MIR -8 200 91 2641 153 27 0 chr6 5110289 5110735 -184168819 - L1MB2 LINE L1 -3 6168 5711 658 275 113 17 chr6 5111585 5111924 -184167630 + L1ME LINE L1 5388 5780 -341 2127 115 7 0 chr6 5111954 5112241 -184167313 + AluSq SINE Alu 1 289 -24 2292 89 3 16 chr6 5112243 5112559 -184166995 + AluSx SINE Alu 1 312 0 867 293 168 55 chr6 5112708 5113318 -184166236 - L1MC4a LINE L1 -376 5802 5271 2332 77 28 0 chr6 5113666 5113953 -184165601 - AluSp SINE Alu -18 295 1 247 356 46 31 chr6 5114355 5114678 -184164876 - L2 LINE L2 -954 2360 2033 5168 69 15 14 chr6 5114773 5115427 -184164127 + L1PA8 LINE L1 5514 6168 -4 328 259 55 82 chr6 5115508 5115557 -184163997 + L1M4 LINE L1 2879 2928 -3218 2056 141 0 3 chr6 5115557 5115854 -184163700 - AluSx SINE Alu -16 296 1 328 259 55 82 chr6 5115854 5115995 -184163559 + L1M4 LINE L1 2928 3065 -3081 2560 55 0 13 chr6 5115995 5116306 -184163248 + AluY SINE Alu 1 307 -4 328 259 55 82 chr6 5116306 5116334 -184163220 + L1M4 LINE L1 3065 3092 -3054 22 0 0 0 chr6 5117807 5117829 -184161725 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 5117861 5117882 -184161672 + AT_rich Low_complexity Low_complexity 1 21 0 338 113 9 12 chr6 5118271 5118502 -184161052 + AluSq SINE Alu 1 300 0 761 151 17 0 chr6 5120932 5121051 -184158503 - FLAM_A SINE Alu -12 121 1 21 0 0 0 chr6 5121402 5121423 -184158131 + AT_rich Low_complexity Low_complexity 1 21 0 209 289 134 31 chr6 5121780 5121877 -184157677 - L2 LINE L2 -188 3084 2978 1094 127 6 35 chr6 5122429 5122602 -184156952 - AluSg/x SINE Alu -22 290 123 2384 99 0 0 chr6 5123459 5123762 -184155792 + AluSx SINE Alu 1 303 -9 1814 145 7 37 chr6 5123942 5124238 -184155316 + AluJo SINE Alu 1 287 -25 3617 99 73 4 chr6 5124405 5124898 -184154656 + MER1A DNA MER1_type 1 527 0 451 315 62 6 chr6 5128289 5128467 -184151087 + MIR SINE MIR 61 248 -14 207 339 66 25 chr6 5128489 5128610 -184150944 + MIR SINE MIR 131 256 -6 583 244 0 8 chr6 5128912 5129035 -184150519 + L2 LINE L2 3192 3313 0 2349 84 0 7 chr6 5129351 5129648 -184149906 - AluSc SINE Alu -14 295 1 1986 119 7 3 chr6 5129714 5130000 -184149554 + AluSq SINE Alu 1 287 -26 2842 10 0 0 chr6 5130043 5130349 -184149205 - AluYb8 SINE Alu -12 306 1 23 54 0 0 chr6 5130987 5131024 -184148530 + AT_rich Low_complexity Low_complexity 1 37 0 2058 162 40 0 chr6 5131317 5131668 -184147886 + MER47A DNA MER2_type 2 366 0 216 0 0 0 chr6 5132366 5132390 -184147164 + (A)n Simple_repeat Simple_repeat 1 24 0 459 0 0 0 chr6 5132390 5132441 -184147113 + (TA)n Simple_repeat Simple_repeat 1 51 0 201 289 84 12 chr6 5132677 5132760 -184146794 - L2 LINE L2 -38 3275 3187 284 333 81 43 chr6 5133344 5133554 -184146000 - L2 LINE L2 -212 3060 2843 186 313 70 26 chr6 5133643 5133758 -184145796 + MIR SINE MIR 15 134 -128 248 333 61 12 chr6 5134074 5134239 -184145315 - L2 LINE L2 -1015 2299 2127 201 318 34 62 chr6 5135463 5135642 -184143912 + L2 LINE L2 2477 2650 -664 365 288 70 109 chr6 5135885 5136198 -184143356 + L2 LINE L2 2967 3267 -5 31 82 0 0 chr6 5137443 5137516 -184142038 + AT_rich Low_complexity Low_complexity 1 73 0 2924 113 57 2 chr6 5138612 5139018 -184140536 - MSTA LTR MaLR 0 428 1 286 259 82 0 chr6 5139554 5139639 -184139915 + MIR SINE MIR 32 123 -85 255 261 85 54 chr6 5139706 5139836 -184139718 + L2 LINE L2 2862 2995 -318 274 298 145 21 chr6 5140029 5140264 -184139290 + MLT1J LTR MaLR 242 505 -6 8844 103 52 2 chr6 5140586 5141810 -184137744 + HSMAR1 DNA Mariner 1 1285 -2 188 219 146 0 chr6 5141815 5141856 -184137698 - L2 LINE L2 -42 3230 3184 1445 208 153 2 chr6 5142463 5142887 -184136667 + Charlie1b DNA MER1_type 34 521 -2 733 184 247 0 chr6 5142988 5143162 -184136392 - MER20 DNA MER1_type -1 218 2 282 290 0 0 chr6 5143230 5143292 -184136262 - MIR SINE MIR -12 250 189 348 215 0 0 chr6 5143309 5143374 -184136180 + MER20 DNA MER1_type 154 218 -1 2461 96 0 0 chr6 5143484 5143797 -184135757 + AluSq SINE Alu 1 313 0 299 100 0 0 chr6 5143811 5143851 -184135703 - Charlie1 DNA MER1_type -2 2759 2720 322 217 126 51 chr6 5143852 5144010 -184135544 - MIR3 SINE MIR -61 147 1 * 420 317 108 67 chr6 5144010 5144609 -184134945 + L2 LINE L2 2304 2929 -385 2304 106 59 12 chr6 5144799 5145121 -184134433 + MER1B DNA MER1_type 1 337 0 336 352 87 27 chr6 5145254 5145473 -184134081 - L2 LINE L2 -222 3050 2819 517 283 62 6 chr6 5145615 5145792 -184133762 + MIR SINE MIR 76 262 0 445 230 30 0 chr6 5146263 5146363 -184133191 - MIR3 SINE MIR -15 193 91 28 48 0 0 chr6 5147867 5147909 -184131645 + GC_rich Low_complexity Low_complexity 1 42 0 2407 84 0 3 chr6 5149547 5149855 -184129699 - AluSx SINE Alu -5 307 1 1961 119 0 110 chr6 5151207 5151543 -184128011 + AluJb SINE Alu 2 300 -2 186 181 153 83 chr6 5151616 5151688 -184127866 - MIR3 SINE MIR -13 195 119 536 111 0 0 chr6 5151757 5151838 -184127716 - AluSq SINE Alu 0 313 233 1096 90 0 7 chr6 5151838 5151983 -184127571 - AluSq SINE Alu -169 144 1 1340 221 34 37 chr6 5152081 5152375 -184127179 - AluJb SINE Alu -9 293 1 393 184 26 0 chr6 5153005 5153081 -184126473 + MADE1 DNA Mariner 1 78 -2 268 214 119 127 chr6 5153135 5153261 -184126293 + MER5B DNA MER1_type 54 178 0 183 231 22 110 chr6 5153631 5153662 -184125892 - MIR SINE MIR -111 151 119 917 143 0 15 chr6 5153662 5153795 -184125759 + FLAM_C SINE Alu 3 133 0 183 231 22 110 chr6 5153795 5153854 -184125700 - MIR SINE MIR -143 119 69 2272 86 7 13 chr6 5154745 5155047 -184124507 + AluY SINE Alu 1 300 -11 8208 33 1 2 chr6 5155047 5156224 -184123330 - L1PA5 LINE L1 -569 5586 4409 4455 47 58 0 chr6 5156224 5156747 -184122807 + L1PA5 LINE L1 5585 6152 -2 328 301 164 35 chr6 5157941 5158267 -184121287 + L2 LINE L2 2717 3096 -176 362 333 98 50 chr6 5158302 5158719 -184120835 - MLT1K LTR MaLR -23 565 129 199 319 35 64 chr6 5158772 5158837 -184120717 + L2 LINE L2 3161 3226 -87 2144 76 0 0 chr6 5158837 5159099 -184120455 - AluSg SINE Alu -10 300 39 199 319 35 64 chr6 5159099 5159174 -184120380 + L2 LINE L2 3226 3297 -16 925 186 164 9 chr6 5159232 5159452 -184120102 + Tigger7 DNA MER2_type 8 261 -472 530 104 7 153 chr6 5159479 5159623 -184119931 + Tigger7 DNA MER2_type 2211 2333 -154 5997 151 37 16 chr6 5159801 5161222 -184118332 - L1MA4 LINE L1 -2 6298 4843 1053 149 24 53 chr6 5161222 5161430 -184118124 + Tigger7 DNA MER2_type 2286 2487 0 649 241 195 67 chr6 5161461 5161985 -184117569 + MLT1L LTR MaLR 3 593 -22 1843 137 7 28 chr6 5161995 5162280 -184117274 - AluJo SINE Alu -20 292 14 475 216 171 0 chr6 5162735 5162846 -184116708 + L2 LINE L2 3143 3272 0 575 241 15 30 chr6 5163648 5163781 -184115773 + MER94 DNA DNA 4 134 0 180 278 98 75 chr6 5165421 5165554 -184114000 + MIR SINE MIR 50 185 -77 2320 97 7 0 chr6 5166372 5166681 -184112873 + AluY SINE Alu 1 311 0 239 211 19 0 chr6 5166826 5166878 -184112676 + (TA)n Simple_repeat Simple_repeat 2 54 0 1644 198 92 24 chr6 5166893 5167272 -184112282 - MLT2B1 LTR ERVL -115 405 1 191 359 162 7 chr6 5167828 5167970 -184111584 + L2 LINE L2 2898 3061 -252 25 31 0 0 chr6 5168220 5168252 -184111302 + AT_rich Low_complexity Low_complexity 1 32 0 1332 124 14 18 chr6 5168718 5168935 -184110619 - L1MB3 LINE L1 -2 6181 5966 2078 124 0 45 chr6 5170231 5170377 -184109177 + AluSx SINE Alu 1 127 -185 2239 117 0 3 chr6 5170377 5170676 -184108878 + AluSp SINE Alu 11 308 -5 2078 124 0 45 chr6 5170676 5170843 -184108711 + AluSx SINE Alu 127 300 -12 857 274 115 32 chr6 5171083 5171517 -184108037 - L1MB3 LINE L1 -2032 5776 5307 1827 163 14 0 chr6 5173541 5173835 -184105719 - AluJb SINE Alu -14 298 1 365 241 111 19 chr6 5175883 5175991 -184103563 - L2 LINE L2 -3 3310 3193 4452 97 45 34 chr6 5176580 5177207 -184102347 - MER51A LTR ERV1 0 634 1 22 35 0 0 chr6 5177297 5177326 -184102228 + AT_rich Low_complexity Low_complexity 1 29 0 1720 167 14 10 chr6 5178003 5178296 -184101258 - AluJb SINE Alu -18 294 1 780 211 83 6 chr6 5178897 5179053 -184100501 + FRAM SINE Alu 1 166 -10 1252 305 88 57 chr6 5179537 5180603 -184098951 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5181264 5181287 -184098267 + (CA)n Simple_repeat Simple_repeat 2 24 0 2869 157 81 13 chr6 5181618 5182139 -184097415 - MER21A LTR ERV1 0 931 376 946 147 187 13 chr6 5182144 5182369 -184097185 - MER21A LTR ERV1 -667 264 1 415 184 112 0 chr6 5183250 5183348 -184096206 - MIR SINE MIR -17 245 137 4170 149 10 18 chr6 5183358 5183406 -184096148 - L1MB3 LINE L1 -2 6181 6134 2582 68 0 0 chr6 5183406 5183717 -184095837 - AluY SINE Alu 0 311 1 4170 149 10 18 chr6 5183717 5184347 -184095207 - L1MB3 LINE L1 -49 6134 5508 247 188 197 51 chr6 5184349 5184466 -184095088 - MIR SINE MIR -97 165 32 2348 105 0 0 chr6 5184642 5184948 -184094606 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5184956 5184983 -184094571 + (CAA)n Simple_repeat Simple_repeat 2 28 0 707 274 0 11 chr6 5185810 5185989 -184093565 - MER5B DNA MER1_type 0 178 2 750 112 0 0 chr6 5186062 5186169 -184093385 + AluSg/x SINE Alu 204 310 0 1800 84 0 16 chr6 5186862 5187111 -184092443 - L1PA6 LINE L1 -55 6099 5855 437 183 104 0 chr6 5187114 5187220 -184092334 + MLT2B2 LTR ERVL 351 465 -50 1295 132 51 180 chr6 5187938 5188293 -184091261 - AluJo SINE Alu -3 309 1 1050 158 0 0 chr6 5188584 5188742 -184090812 + FRAM SINE Alu 4 161 -15 483 18 0 0 chr6 5189068 5189124 -184090430 + (CA)n Simple_repeat Simple_repeat 1 56 0 239 232 171 0 chr6 5189537 5189619 -184089935 - MER5A DNA MER1_type -77 112 17 834 203 68 5 chr6 5189775 5189967 -184089587 - MIR SINE MIR -26 236 33 521 289 114 9 chr6 5190233 5190444 -184089110 - MIR SINE MIR -4 258 26 918 279 41 16 chr6 5191518 5191837 -184087717 - L1ME4a LINE L1 -259 5862 5536 447 158 12 12 chr6 5192365 5192447 -184087107 + MER117 DNA MER1_type 55 136 -61 339 280 88 40 chr6 5192853 5192978 -184086576 - MIR SINE MIR -58 150 20 259 345 236 3 chr6 5195415 5195716 -184083838 - L2 LINE L2 -318 2954 2586 406 217 61 20 chr6 5195723 5195927 -184083627 - MER5C DNA MER1_type -2 322 52 1988 190 40 3 chr6 5196029 5196381 -184083173 - MLT1A1 LTR MaLR 0 365 1 197 394 10 20 chr6 5196387 5196486 -184083068 - L2 LINE L2 -38 3234 3137 * 253 326 0 10 chr6 5196482 5196580 -184082974 - L2 LINE L2 -756 2558 2462 825 280 73 103 chr6 5196876 5197818 -184081736 + L1MC4a LINE L1 4390 5303 -843 281 248 132 16 chr6 5197853 5197982 -184081572 + L1MC4a LINE L1 5333 5476 -2332 213 262 139 66 chr6 5198026 5198148 -184081406 + L2 LINE L2 3183 3313 0 712 322 47 13 chr6 5198197 5198514 -184081040 + L1MC4a LINE L1 5566 5893 -1915 22 35 0 0 chr6 5199523 5199552 -184080002 + AT_rich Low_complexity Low_complexity 1 29 0 316 274 14 0 chr6 5200019 5200092 -184079462 - L2 LINE L2 -25 3247 3174 228 67 0 0 chr6 5200293 5200323 -184079231 + (GGGAGA)n Simple_repeat Simple_repeat 1 30 0 438 217 30 136 chr6 5201060 5201120 -184078434 - MER5B DNA MER1_type -1 177 112 306 0 0 0 chr6 5201120 5201154 -184078400 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 438 217 30 136 chr6 5201154 5201291 -184078263 - MER5B DNA MER1_type -66 112 1 437 313 108 35 chr6 5201291 5201606 -184077948 - L2 LINE L2 -495 2819 2482 378 61 0 0 chr6 5202993 5203042 -184076512 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 2907 221 129 53 chr6 5203672 5204712 -184074842 + L1MCb LINE L1 3 1121 -4924 2156 165 50 81 chr6 5204727 5204775 -184074779 - LTR58 LTR ERV1 -2 677 629 1834 173 3 3 chr6 5204775 5205076 -184074478 + AluJb SINE Alu 1 301 -11 2156 165 50 81 chr6 5205076 5205355 -184074199 - LTR58 LTR ERV1 -50 629 343 2344 81 0 37 chr6 5205355 5205677 -184073877 + AluSg SINE Alu 1 310 0 2156 165 50 81 chr6 5205677 5205795 -184073759 - LTR58 LTR ERV1 -336 343 248 1709 116 455 40 chr6 5205795 5206243 -184073311 - MER51A LTR ERV1 0 634 1 2156 165 50 81 chr6 5206243 5206339 -184073215 - LTR58 LTR ERV1 -431 248 151 4387 147 14 1 chr6 5206340 5207042 -184072512 + MER50 LTR ERV1 1 711 -23 394 147 44 0 chr6 5207048 5207116 -184072438 - LTR58 LTR ERV1 -534 145 75 804 186 14 54 chr6 5207118 5207349 -184072205 + MST-int LTR MaLR 382 667 -704 1251 213 20 20 chr6 5207989 5208242 -184071312 - MLT1A1 LTR MaLR -4 361 109 219 287 69 23 chr6 5209299 5209386 -184070168 - L2 LINE L2 -1 3271 3181 272 226 118 29 chr6 5209446 5209548 -184070006 + L1ME LINE L1 5726 5836 -285 3061 132 40 6 chr6 5211022 5211492 -184068062 + LTR19A LTR ERV1 1 486 0 207 0 0 0 chr6 5211720 5211743 -184067811 + (T)n Simple_repeat Simple_repeat 1 23 0 258 275 141 34 chr6 5213100 5213408 -184066146 + L1MC/D LINE L1 5328 5660 -461 2769 102 8 6 chr6 5214633 5214996 -184064558 + THE1B LTR MaLR 1 364 0 198 245 142 38 chr6 5215737 5215843 -184063711 + MIR SINE MIR 20 136 -72 1744 272 139 25 chr6 5216712 5217418 -184062136 - MER21B LTR ERV1 -57 806 21 21 36 0 0 chr6 5217508 5217536 -184062018 + AT_rich Low_complexity Low_complexity 1 28 0 1755 184 3 0 chr6 5218100 5218399 -184061155 + AluJb SINE Alu 1 300 -12 541 272 29 59 chr6 5219219 5219458 -184060096 - MIR SINE MIR -12 250 19 806 279 71 16 chr6 5221515 5221837 -184057717 + L1MC4a LINE L1 5502 5841 -1967 23 0 0 0 chr6 5223757 5223780 -184055774 + AT_rich Low_complexity Low_complexity 1 23 0 1853 44 48 24 chr6 5223780 5224030 -184055524 - L1MA1 LINE L1 0 6302 6047 325 307 90 33 chr6 5224077 5224409 -184055145 - L1M4 LINE L1 -914 5232 4882 293 138 0 17 chr6 5224422 5224480 -184055074 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 1537 209 93 34 chr6 5226627 5226707 -184052847 - MER95 LTR ERV 0 431 357 1743 168 7 26 chr6 5226707 5227011 -184052543 - AluJo SINE Alu -14 298 1 1537 209 93 34 chr6 5227011 5227337 -184052217 - MER95 LTR ERV -74 357 1 2230 60 0 8 chr6 5228142 5228410 -184051144 + AluSg SINE Alu 1 266 -44 432 0 0 0 chr6 5228465 5228513 -184051041 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr6 5228513 5228534 -184051020 + (T)n Simple_repeat Simple_repeat 1 21 0 2218 132 0 0 chr6 5228784 5229095 -184050459 - AluSx SINE Alu -1 311 1 250 303 45 0 chr6 5229282 5229371 -184050183 - MIR3 SINE MIR -6 202 110 656 271 105 32 chr6 5229408 5229685 -184049869 + Tigger8 DNA MER2_type 8 304 -362 2302 84 3 0 chr6 5229767 5230054 -184049500 + AluSp SINE Alu 21 308 -5 2199 99 0 0 chr6 5230477 5230788 -184048766 - AluSq SINE Alu 0 311 1 2142 143 0 10 chr6 5232054 5232368 -184047186 - AluSx SINE Alu -1 311 1 302 264 23 23 chr6 5233377 5233464 -184046090 + MIR3 SINE MIR 98 184 -24 265 265 43 8 chr6 5233873 5233990 -184045564 - L1MC4 LINE L1 -1 8041 7921 2225 217 79 72 chr6 5234126 5234188 -184045366 - L1ME2 LINE L1 0 6164 6104 2099 129 0 7 chr6 5234188 5234490 -184045064 - AluSx SINE Alu -12 300 1 2225 217 79 72 chr6 5234490 5234781 -184044773 - L1ME2 LINE L1 -60 6104 5817 186 43 0 0 chr6 5234781 5234804 -184044750 + (TG)n Simple_repeat Simple_repeat 2 24 0 2225 217 79 72 chr6 5234804 5235639 -184043915 - L1ME2 LINE L1 -347 5817 4959 212 57 0 29 chr6 5235758 5235793 -184043761 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 202 337 0 12 chr6 5235810 5235893 -184043661 - L2 LINE L2 -67 3246 3165 2395 227 38 24 chr6 5235971 5236716 -184042838 + L1M4 LINE L1 3850 4604 -1542 259 243 0 0 chr6 5236730 5236800 -184042754 + Charlie1 DNA MER1_type 1569 1638 -1123 1939 175 72 30 chr6 5236843 5237340 -184042214 - L1MC3 LINE L1 -86 7699 7182 1072 143 0 34 chr6 5237409 5237584 -184041970 - AluJo SINE Alu -143 169 1 951 282 33 3 chr6 5237604 5237966 -184041588 + L1M4 LINE L1 4631 5003 -1143 784 163 0 7 chr6 5237994 5238147 -184041407 + L1MD1 LINE L1 6089 6240 -2 1416 114 35 26 chr6 5239300 5239528 -184040026 - MER30 DNA MER1_type 0 230 1 218 320 72 39 chr6 5239774 5239955 -184039599 + MIR3 SINE MIR 15 201 -7 200 167 21 0 chr6 5239994 5240042 -184039512 + CT-rich Low_complexity Low_complexity 4 52 0 4974 153 57 24 chr6 5240056 5241117 -184038437 - L1MA6 LINE L1 0 6300 5205 2555 57 0 0 chr6 5241788 5242089 -184037465 - AluY SINE Alu -10 301 1 652 264 56 0 chr6 5242095 5242273 -184037281 - MER5A DNA MER1_type -1 188 1 25 51 0 0 chr6 5242281 5242320 -184037234 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr6 5242363 5242390 -184037164 + AT_rich Low_complexity Low_complexity 1 27 0 2082 102 54 7 chr6 5242639 5242933 -184036621 - AluSg SINE Alu -2 308 1 255 103 0 0 chr6 5242978 5243017 -184036537 + (CA)n Simple_repeat Simple_repeat 1 39 0 2833 196 42 24 chr6 5243150 5243443 -184036111 - MER82 DNA MER2_type -12 641 355 1988 128 0 7 chr6 5243443 5243725 -184035829 + AluSx SINE Alu 1 280 -32 279 39 20 39 chr6 5243729 5243780 -184035774 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2833 196 42 24 chr6 5243780 5244104 -184035450 - MER82 DNA MER2_type -300 353 8 184 286 0 0 chr6 5245027 5245069 -184034485 + MIR SINE MIR 35 76 -186 23 0 0 0 chr6 5245462 5245485 -184034069 + AT_rich Low_complexity Low_complexity 1 23 0 2187 116 0 3 chr6 5246307 5246617 -184032937 - AluSx SINE Alu -3 309 1 185 62 0 31 chr6 5247553 5247585 -184031969 + (TTCA)n Simple_repeat Simple_repeat 4 34 0 203 333 33 17 chr6 5247654 5247714 -184031840 - L2 LINE L2 -93 3179 3119 1306 220 114 22 chr6 5248273 5248824 -184030730 - L1ME4a LINE L1 -7 6114 5513 204 313 67 47 chr6 5249490 5249640 -184029914 - MIR SINE MIR -1 261 109 3311 121 25 36 chr6 5249649 5250191 -184029363 - L1MA8 LINE L1 -426 5865 5328 2456 84 0 0 chr6 5250191 5250502 -184029052 - AluY SINE Alu 0 311 1 3311 121 25 36 chr6 5250502 5250650 -184028904 - L1MA8 LINE L1 -963 5328 5180 186 373 35 38 chr6 5250993 5251307 -184028247 + L2 LINE L2 2043 2355 -959 405 319 24 24 chr6 5251514 5251680 -184027874 - MIR SINE MIR -94 168 3 590 282 35 0 chr6 5251849 5252023 -184027531 - MER58A DNA MER1_type 0 224 45 1839 136 3 69 chr6 5252027 5252359 -184027195 + AluJb SINE Alu 1 310 -2 202 146 0 24 chr6 5252440 5252481 -184027073 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1829 136 6 73 chr6 5252594 5252924 -184026630 - AluJo SINE Alu 0 312 5 2213 129 90 5 chr6 5252936 5253347 -184026207 - Tigger2 DNA MER2_type 0 2718 2273 362 197 15 0 chr6 5253338 5253404 -184026150 - Tigger2 DNA MER2_type -2650 68 2 * 302 351 27 0 chr6 5253445 5253556 -184025998 + MIR SINE MIR 77 190 -72 403 298 31 43 chr6 5258199 5258379 -184021175 - MIR3 SINE MIR -64 144 12 276 291 157 13 chr6 5259105 5259487 -184020067 + L1ME3A LINE L1 2113 2549 -3597 23 0 0 0 chr6 5259570 5259593 -184019961 + AT_rich Low_complexity Low_complexity 1 23 0 265 308 0 0 chr6 5259599 5259677 -184019877 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 329 272 52 60 chr6 5259758 5259990 -184019564 + L1ME3A LINE L1 2745 2974 -3172 304 255 75 9 chr6 5260644 5260750 -184018804 + L1MC5 LINE L1 7249 7361 -600 730 219 122 48 chr6 5261089 5261523 -184018031 + L1MC5 LINE L1 7452 7917 -44 334 254 154 86 chr6 5261736 5262016 -184017538 + L1ME3A LINE L1 3475 3773 -2373 1151 274 52 50 chr6 5262056 5262849 -184016705 + L1ME3A LINE L1 3860 4653 -1493 383 299 95 33 chr6 5262991 5263333 -184016221 + L1ME3A LINE L1 4878 5231 -915 383 307 102 0 chr6 5263537 5263752 -184015802 + L1ME3A LINE L1 5354 5590 -572 316 303 28 0 chr6 5263814 5263956 -184015598 + L1ME3A LINE L1 5740 5885 -285 226 259 0 0 chr6 5264271 5264325 -184015229 + Charlie1 DNA MER1_type 2708 2761 0 22 0 0 0 chr6 5264802 5264824 -184014730 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr6 5265244 5265284 -184014270 + AT_rich Low_complexity Low_complexity 1 40 0 410 233 44 107 chr6 5266611 5266817 -184012737 - LTR41 LTR ERVL -5 768 576 629 171 39 0 chr6 5267077 5267206 -184012348 - LTR41 LTR ERVL -598 175 42 2207 72 11 0 chr6 5268244 5268577 -184010977 - AluY SINE Alu 0 336 1 456 19 0 0 chr6 5268651 5268704 -184010850 + (CA)n Simple_repeat Simple_repeat 2 54 0 1215 219 22 52 chr6 5270007 5270419 -184009135 - MLT2B1 LTR ERVL 0 414 1 294 326 23 38 chr6 5270714 5270846 -184008708 + MIR SINE MIR 20 149 -113 2338 99 0 16 chr6 5272693 5273007 -184006547 - AluSc SINE Alu 0 309 1 669 182 21 3 chr6 5273852 5274010 -184005544 - L1 LINE L1 -1031 5115 4959 705 89 27 9 chr6 5274043 5274155 -184005399 + L1MA5 LINE L1 6187 6300 0 2021 157 0 0 chr6 5274313 5274606 -184004948 + AluSx SINE Alu 1 293 -19 1688 224 93 28 chr6 5275006 5275072 -184004482 - L1ME LINE L1 -686 5549 5489 2354 108 0 6 chr6 5275072 5275386 -184004168 - AluSx SINE Alu 0 312 1 1688 224 93 28 chr6 5275386 5275481 -184004073 - L1ME LINE L1 -746 5489 5402 1662 180 30 3 chr6 5275481 5275776 -184003778 - AluJb SINE Alu -9 303 1 1688 224 93 28 chr6 5275776 5276394 -184003160 - L1ME LINE L1 -833 5402 4726 992 213 122 26 chr6 5276377 5276762 -184002792 - L1ME LINE L1 -4123 2273 1852 * 235 306 62 0 chr6 5277097 5277158 -184002396 + L1MEc LINE L1 35 91 -6305 216 0 0 0 chr6 5277158 5277182 -184002372 + (TAA)n Simple_repeat Simple_repeat 1 24 0 235 306 62 0 chr6 5277182 5277264 -184002290 + L1MEc LINE L1 91 187 -6209 2746 238 81 17 chr6 5277267 5278387 -184001167 + L1MEc LINE L1 256 1447 -4949 235 298 59 121 chr6 5278763 5279135 -184000419 + L2 LINE L2 1356 1704 -1610 615 349 96 41 chr6 5279211 5279993 -183999561 + L2 LINE L2 2060 2884 -430 3604 96 0 2 chr6 5280711 5281213 -183998341 + THE1B-int LTR MaLR 1080 1580 0 2061 116 101 18 chr6 5281213 5281549 -183998005 + THE1B LTR MaLR 1 364 0 1797 196 59 50 chr6 5282361 5282917 -183996637 + L1ME1 LINE L1 5606 6166 0 708 221 145 25 chr6 5284720 5284996 -183994558 - LTR16A LTR ERVL -78 372 64 261 0 0 0 chr6 5285855 5285884 -183993670 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1017 146 0 13 chr6 5285887 5286045 -183993509 - AluJo SINE Alu -30 282 127 407 322 66 0 chr6 5286152 5286304 -183993250 + MIR SINE MIR 24 185 -77 7826 106 8 0 chr6 5286698 5287752 -183991802 - THE1B-int LTR MaLR -517 1063 1 2246 108 108 21 chr6 5287752 5288087 -183991467 - THE1B LTR MaLR 0 364 1 378 283 53 84 chr6 5288299 5288525 -183991029 + MIR SINE MIR 39 257 -5 560 315 91 17 chr6 5288614 5288846 -183990708 - MIR SINE MIR 0 262 14 683 289 21 26 chr6 5290005 5290391 -183989163 + L1MC4a LINE L1 5534 5982 -1826 300 280 17 25 chr6 5291664 5291782 -183987772 - MIR SINE MIR -99 163 47 484 115 0 0 chr6 5292066 5292127 -183987427 - AluS SINE Alu -247 62 2 708 299 86 30 chr6 5292385 5292860 -183986694 - L1ME3A LINE L1 -230 5940 5439 867 171 35 29 chr6 5292860 5293030 -183986524 + AluJb SINE Alu 135 305 -7 21 36 0 0 chr6 5293097 5293125 -183986429 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 35 21 chr6 5293130 5293274 -183986280 - L1ME3A LINE L1 -813 5333 5188 463 251 135 65 chr6 5294262 5294665 -183984889 + MLT1H LTR MaLR 30 547 -2 348 24 0 0 chr6 5294999 5295040 -183984514 + (TG)n Simple_repeat Simple_repeat 1 41 0 2411 95 0 0 chr6 5295093 5295399 -183984155 + AluSg SINE Alu 1 306 -4 198 0 0 0 chr6 5295399 5295421 -183984133 + (GA)n Simple_repeat Simple_repeat 2 23 0 574 192 0 10 chr6 5295481 5295585 -183983969 + L2 LINE L2 3189 3291 -22 504 235 90 36 chr6 5295773 5295939 -183983615 + MIR3 SINE MIR 11 185 -23 226 288 137 0 chr6 5296520 5296659 -183982895 + MER103 DNA DNA 7 164 -2 2432 69 0 13 chr6 5296824 5297129 -183982425 + AluY SINE Alu 1 301 -10 182 371 96 20 chr6 5297422 5297619 -183981935 - L2 LINE L2 -93 3179 2968 462 248 0 9 chr6 5297636 5297749 -183981805 - L1MA9 LINE L1 -38 6274 6163 191 360 126 18 chr6 5297975 5298197 -183981357 - L2 LINE L2 -562 2752 2507 340 250 0 0 chr6 5298552 5298616 -183980938 + MER8 DNA MER2_type 150 213 -26 443 338 87 51 chr6 5298684 5299152 -183980402 - L2 LINE L2 -55 3217 2725 1126 226 110 18 chr6 5299288 5299678 -183979876 - L1MC4a LINE L1 -1804 6004 5579 262 340 172 0 chr6 5299718 5299956 -183979598 - L2 LINE L2 -812 2502 2224 2342 102 0 13 chr6 5299973 5300288 -183979266 + AluSx SINE Alu 1 311 -1 202 135 27 0 chr6 5300474 5300511 -183979043 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 1430 157 0 25 chr6 5300538 5300780 -183978774 - MER46A DNA MER2_type 0 236 1 1557 183 8 0 chr6 5300803 5301038 -183978516 + MER8 DNA MER2_type 3 239 0 933 231 74 26 chr6 5301297 5301608 -183977946 - MER58B DNA MER1_type -8 333 8 184 174 65 0 chr6 5301616 5301662 -183977892 - L2 LINE L2 -310 2962 2914 250 350 60 0 chr6 5303458 5303558 -183975996 + L2 LINE L2 3201 3306 -7 2182 92 0 24 chr6 5305235 5305550 -183974004 - AluY SINE Alu 0 311 1 369 258 22 82 chr6 5305831 5306013 -183973541 + L2 LINE L2 3118 3288 -25 334 298 37 62 chr6 5306616 5306777 -183972777 + MIR3 SINE MIR 16 172 -36 1975 150 10 0 chr6 5306841 5307147 -183972407 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5307147 5307253 -183972301 - L2 LINE L2 -14 3299 3194 2251 94 7 3 chr6 5307358 5307655 -183971899 + AluSg SINE Alu 1 298 -12 261 277 53 0 chr6 5308304 5308398 -183971156 + L2 LINE L2 3164 3262 -10 1016 286 61 61 chr6 5310608 5311234 -183968320 - HAL1 LINE L1 -30 2477 1852 368 255 68 19 chr6 5311282 5311443 -183968111 - LTR67 LTR ERVL -8 549 381 226 344 33 11 chr6 5311701 5311791 -183967763 - LTR67 LTR ERVL -367 190 99 279 54 0 0 chr6 5311873 5311910 -183967644 + (TG)n Simple_repeat Simple_repeat 2 38 0 1808 182 0 3 chr6 5311950 5312246 -183967308 - AluSx SINE Alu -17 295 1 342 233 186 16 chr6 5312343 5312472 -183967082 - L1MB8 LINE L1 -64 6114 5964 340 129 0 32 chr6 5312472 5312534 -183967020 - Alu SINE Alu -9 293 234 3063 189 89 101 chr6 5312534 5313844 -183965710 - L1ME1 LINE L1 -196 5970 4513 534 236 152 12 chr6 5313844 5314009 -183965545 - MER58A DNA MER1_type 0 224 37 3063 189 89 101 chr6 5314009 5314256 -183965298 - L1ME1 LINE L1 -1653 4513 4264 366 211 46 28 chr6 5314240 5314349 -183965205 - HAL1 LINE L1 -1043 1464 1354 * 196 204 0 45 chr6 5315007 5315051 -183964503 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5315694 5315717 -183963837 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 290 341 112 18 chr6 5315794 5316017 -183963537 + L3b LINE CR1 1272 1515 -68 311 314 108 10 chr6 5317299 5317401 -183962153 + L2 LINE L2 3138 3249 -23 236 234 125 16 chr6 5317587 5317715 -183961839 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5318094 5318134 -183961420 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 363 240 10 48 chr6 5318632 5318736 -183960818 + MIR3 SINE MIR 109 208 0 252 159 0 0 chr6 5318938 5318982 -183960572 - L3 LINE CR1 -8 1569 1526 * 259 178 0 0 chr6 5318943 5318988 -183960566 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5319260 5319286 -183960268 + (A)n Simple_repeat Simple_repeat 1 26 0 657 340 31 12 chr6 5320721 5320977 -183958577 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5320980 5321001 -183958553 + AT_rich Low_complexity Low_complexity 1 21 0 1385 159 0 5 chr6 5321061 5321359 -183958195 - MER2 DNA MER2_type 0 345 2 209 265 0 0 chr6 5323326 5323375 -183956179 + GA-rich Low_complexity Low_complexity 5 53 0 2551 70 0 3 chr6 5324151 5324463 -183955091 + AluY SINE Alu 1 311 0 202 239 0 0 chr6 5325138 5325184 -183954370 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2089 154 14 61 chr6 5325298 5325570 -183953984 - MER7A DNA MER2_type -2692 346 96 2204 97 10 0 chr6 5325570 5325859 -183953695 - AluSg SINE Alu -13 297 6 2089 154 14 61 chr6 5325859 5325949 -183953605 - MER7A DNA MER2_type -2942 96 3 292 311 185 12 chr6 5326411 5326702 -183952852 + L2 LINE L2 2712 3037 -276 343 197 94 60 chr6 5326869 5326986 -183952568 + MLT1L LTR MaLR 147 267 -348 330 236 85 9 chr6 5327123 5327229 -183952325 + MLT1L LTR MaLR 498 611 -4 544 273 42 42 chr6 5327234 5327450 -183952104 + L2 LINE L2 3098 3313 0 204 234 0 0 chr6 5327450 5327497 -183952057 + (TGAA)n Simple_repeat Simple_repeat 2 48 0 677 222 74 39 chr6 5328436 5328639 -183950915 + MIR SINE MIR 5 214 -48 1917 134 0 3 chr6 5328643 5328956 -183950598 + AluJo SINE Alu 1 312 0 312 273 79 52 chr6 5329280 5329464 -183950090 - MIR SINE MIR -64 198 11 1229 289 150 6 chr6 5330878 5331365 -183948189 + L3 LINE CR1 527 1083 -494 314 215 116 70 chr6 5333078 5333250 -183946304 + MER104 DNA Tc2 1 180 0 320 306 88 69 chr6 5333453 5333714 -183945840 - L2 LINE L2 -22 3250 2985 253 151 0 38 chr6 5333983 5334036 -183945518 + LTR16C LTR ERVL 185 235 -256 354 267 68 25 chr6 5334096 5334257 -183945297 + LTR16C LTR ERVL 320 487 -4 1707 171 44 0 chr6 5334303 5334616 -183944938 + AluSx SINE Alu 1 288 -24 850 149 0 27 chr6 5334894 5335042 -183944512 + FRAM SINE Alu 32 175 -1 902 178 86 25 chr6 5335288 5335485 -183944069 + MER3 DNA MER1_type 1 209 0 241 277 108 0 chr6 5336125 5336208 -183943346 + MIR SINE MIR 115 206 -56 728 238 109 5 chr6 5336469 5336662 -183942892 - MER58C DNA MER1_type -2 213 1 749 257 30 0 chr6 5336670 5336872 -183942682 - MER3 DNA MER1_type -1 208 1 505 273 120 19 chr6 5336872 5337072 -183942482 + MIR SINE MIR 37 260 -2 28 0 0 0 chr6 5337122 5337150 -183942404 + AT_rich Low_complexity Low_complexity 1 28 0 482 295 29 70 chr6 5338316 5338560 -183940994 - MIR SINE MIR -8 254 21 192 285 131 22 chr6 5338572 5338709 -183940845 + MIR3 SINE MIR 50 201 -7 240 250 53 13 chr6 5339517 5339593 -183939961 - L2 LINE L2 -921 2393 2315 803 240 6 95 chr6 5339804 5340078 -183939476 - L2 LINE L2 -4 3309 3065 2053 144 0 0 chr6 5340078 5340376 -183939178 + AluSx SINE Alu 1 298 -14 803 240 6 95 chr6 5340376 5340418 -183939136 - L2 LINE L2 -248 3065 3021 2305 260 28 5 chr6 5340805 5341417 -183938137 - L1ME1 LINE L1 -2 6164 5539 1964 227 40 62 chr6 5341417 5341963 -183937591 + MLT1F LTR MaLR 9 542 0 815 236 29 12 chr6 5341965 5342206 -183937348 - L1ME1 LINE L1 -635 5529 5285 292 243 43 14 chr6 5343453 5343523 -183936031 - L2 LINE L2 -6 3307 3236 251 324 14 0 chr6 5343560 5343634 -183935920 - L2 LINE L2 -8 3305 3231 1212 115 0 0 chr6 5343980 5344145 -183935409 + AluSq SINE Alu 148 312 -1 565 296 17 48 chr6 5344458 5344688 -183934866 + MIR SINE MIR 30 252 -10 195 42 0 0 chr6 5345022 5345046 -183934508 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 152 19 14 chr6 5347364 5347726 -183931828 - MLT1B LTR MaLR 0 390 27 718 217 0 8 chr6 5347760 5347889 -183931665 - FLAM_A SINE Alu -5 128 1 22 56 0 0 chr6 5348645 5348681 -183930873 + AT_rich Low_complexity Low_complexity 1 36 0 321 286 125 0 chr6 5349375 5349487 -183930067 + L2 LINE L2 3139 3264 -8 1766 83 0 0 chr6 5349810 5350027 -183929527 - AluSg/x SINE Alu -18 294 78 362 293 73 20 chr6 5350363 5350513 -183929041 + MIR3 SINE MIR 39 196 -12 204 97 0 0 chr6 5351083 5351114 -183928440 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 231 163 23 23 chr6 5351538 5351581 -183927973 + MIR SINE MIR 15 57 -205 342 0 0 0 chr6 5351840 5351878 -183927676 + (GA)n Simple_repeat Simple_repeat 1 38 0 204 262 87 58 chr6 5352146 5352249 -183927305 + MIR SINE MIR 139 244 -18 2073 114 7 0 chr6 5352383 5352701 -183926853 - AluSx SINE Alu 0 320 1 49 52 0 0 chr6 5354066 5354143 -183925411 + AT_rich Low_complexity Low_complexity 1 77 0 927 231 126 0 chr6 5354143 5354280 -183925274 + L1MA9 LINE L1 6000 6118 -194 297 0 0 0 chr6 5354280 5354313 -183925241 + (CA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr6 5354312 5354341 -183925213 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 927 231 126 0 chr6 5354313 5354450 -183925104 + L1MA9 LINE L1 6118 6277 -35 35 0 0 0 chr6 5354455 5354490 -183925064 + AT_rich Low_complexity Low_complexity 1 35 0 1987 228 56 22 chr6 5354861 5355488 -183924066 - MER114 LTR ERV 0 648 1 707 188 160 14 chr6 5355730 5355874 -183923680 - AluJb SINE Alu -12 300 136 352 250 0 0 chr6 5356002 5356074 -183923480 - MER94 DNA DNA -62 72 1 1268 63 0 2 chr6 5356374 5356565 -183922989 - MER11C LTR ERVK -790 281 1 22 56 0 0 chr6 5356765 5356801 -183922753 + AT_rich Low_complexity Low_complexity 1 36 0 701 203 26 46 chr6 5359829 5359982 -183919572 - MER58B DNA MER1_type -1 340 191 773 350 52 11 chr6 5362639 5363005 -183916549 - L3 LINE CR1 -823 754 374 406 248 80 16 chr6 5363020 5363145 -183916409 - MLT1K LTR MaLR -2 586 454 255 213 13 93 chr6 5363146 5363221 -183916333 - MIR SINE MIR -120 88 20 246 326 12 0 chr6 5363489 5363575 -183915979 - L2 LINE L2 0 3272 3186 195 224 45 60 chr6 5363647 5363714 -183915840 - L2 LINE L2 0 3313 3248 206 336 128 38 chr6 5363852 5364197 -183915357 - L2 LINE L2 -557 2757 2382 * 305 216 99 27 chr6 5364169 5364280 -183915274 + L2 LINE L2 3150 3268 -4 180 0 0 0 chr6 5364995 5365015 -183914539 + (TA)n Simple_repeat Simple_repeat 2 21 0 1402 159 18 57 chr6 5365675 5365958 -183913596 - AluJb SINE Alu -17 295 24 2159 147 0 0 chr6 5366322 5366634 -183912920 - AluSx SINE Alu 0 312 1 518 278 67 66 chr6 5366869 5367203 -183912351 - MLT1I LTR MaLR -7 443 71 201 320 102 61 chr6 5367389 5367586 -183911968 + MIR3 SINE MIR 4 208 0 529 154 83 0 chr6 5368127 5368232 -183911322 + MER33 DNA MER1_type 1 103 -97 2099 103 3 10 chr6 5368239 5368531 -183911023 + AluSx SINE Alu 6 295 -17 812 151 49 27 chr6 5368559 5368744 -183910810 + MER33 DNA MER1_type 133 321 -42 22 0 0 0 chr6 5369667 5369689 -183909865 + AT_rich Low_complexity Low_complexity 1 22 0 266 294 95 87 chr6 5370165 5370396 -183909158 - L2 LINE L2 -1395 1919 1687 26 0 0 0 chr6 5370619 5370645 -183908909 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr6 5371108 5371138 -183908416 + AT_rich Low_complexity Low_complexity 1 30 0 245 298 75 11 chr6 5371514 5371608 -183907946 - L1MC/D LINE L1 -2268 5540 5441 29 0 0 0 chr6 5372008 5372037 -183907517 + AT_rich Low_complexity Low_complexity 1 29 0 252 263 105 42 chr6 5372339 5372434 -183907120 + L2 LINE L2 3210 3310 -3 303 198 18 90 chr6 5372953 5373064 -183906490 - MLT1J2 LTR MaLR -2 448 346 248 237 22 74 chr6 5373153 5373288 -183906266 - MLT1J1 LTR MaLR -281 165 38 879 248 57 5 chr6 5375501 5375711 -183903843 - MIR SINE MIR -25 237 17 2201 132 7 0 chr6 5377512 5377822 -183901732 - AluSq SINE Alu -1 312 1 21 36 0 0 chr6 5379089 5379117 -183900437 + AT_rich Low_complexity Low_complexity 1 28 0 653 170 0 10 chr6 5379117 5379217 -183900337 - FLAM_A SINE Alu -26 116 18 248 294 0 15 chr6 5379430 5379498 -183900056 + MIR SINE MIR 18 84 -178 660 247 52 81 chr6 5379721 5379992 -183899562 + MLT1L LTR MaLR 240 598 -9 412 257 71 0 chr6 5379994 5380107 -183899447 + MIR SINE MIR 78 198 -64 2300 95 0 0 chr6 5380217 5380511 -183899043 - AluSc SINE Alu -15 294 1 956 253 179 38 chr6 5380631 5381023 -183898531 + MLT1H LTR MaLR 100 546 -3 1760 274 6 4 chr6 5381059 5381540 -183898014 + L1MC4 LINE L1 7413 7894 -148 259 205 21 6 chr6 5381548 5381890 -183897664 + (TA)n Simple_repeat Simple_repeat 1 347 0 333 322 39 71 chr6 5381891 5382146 -183897408 - MLT1L LTR MaLR -201 414 168 2127 109 0 3 chr6 5383375 5383689 -183895865 + AluSg SINE Alu 1 313 0 190 107 0 0 chr6 5383661 5383718 -183895836 + (TAA)n Simple_repeat Simple_repeat 1 57 0 548 313 53 40 chr6 5384396 5384696 -183894858 - L2 LINE L2 -14 3299 2996 268 305 11 21 chr6 5384916 5385011 -183894543 - MIR3 SINE MIR -9 199 106 2434 177 59 4 chr6 5385167 5385676 -183893878 - L1MB4 LINE L1 -2 6178 5642 345 208 0 0 chr6 5385704 5385781 -183893773 + (CA)n Simple_repeat Simple_repeat 2 78 0 2555 183 10 51 chr6 5385795 5386798 -183892756 - L1MB4 LINE L1 -542 5632 3794 719 211 83 6 chr6 5387319 5387475 -183892079 + FRAM SINE Alu 1 166 -10 1263 305 88 57 chr6 5387959 5389025 -183890529 - L2 LINE L2 -567 2747 1649 186 43 0 0 chr6 5389686 5389709 -183889845 + (CA)n Simple_repeat Simple_repeat 2 24 0 2646 161 81 13 chr6 5390040 5390561 -183888993 - MER21A LTR ERV1 0 931 376 845 147 187 13 chr6 5390566 5390791 -183888763 - MER21A LTR ERV1 -667 264 1 412 184 112 0 chr6 5391672 5391770 -183887784 - MIR SINE MIR -17 245 137 3822 152 9 16 chr6 5391780 5391828 -183887726 - L1MB3 LINE L1 -2 6181 6134 2571 68 0 0 chr6 5391828 5392139 -183887415 - AluY SINE Alu 0 311 1 3822 152 9 16 chr6 5392139 5392769 -183886785 - L1MB3 LINE L1 -49 6134 5508 245 197 197 51 chr6 5392771 5392888 -183886666 - MIR SINE MIR -97 165 32 2349 105 0 0 chr6 5393064 5393370 -183886184 + AluSq SINE Alu 1 306 -7 201 74 0 0 chr6 5393378 5393405 -183886149 + (CAA)n Simple_repeat Simple_repeat 2 28 0 633 274 0 11 chr6 5394232 5394411 -183885143 - MER5B DNA MER1_type 0 178 2 703 112 0 0 chr6 5394484 5394591 -183884963 + AluSg/x SINE Alu 204 310 0 1776 78 62 0 chr6 5395296 5395554 -183884000 - L1PA6 LINE L1 -63 6091 5818 395 171 102 0 chr6 5395554 5395642 -183883912 + MLT2B2 LTR ERVL 369 465 -50 1315 132 51 180 chr6 5396360 5396715 -183882839 - AluJo SINE Alu -3 309 1 2176 92 0 24 chr6 5398606 5398921 -183880633 - AluY SINE Alu 0 311 1 361 258 22 82 chr6 5399202 5399384 -183880170 + L2 LINE L2 3118 3288 -25 343 298 37 62 chr6 5399987 5400148 -183879406 + MIR3 SINE MIR 16 172 -36 1990 150 10 0 chr6 5400212 5400518 -183879036 + AluJb SINE Alu 1 309 -3 503 245 0 0 chr6 5400518 5400624 -183878930 - L2 LINE L2 -14 3299 3194 2244 94 7 3 chr6 5400729 5401026 -183878528 + AluSg SINE Alu 1 298 -12 250 272 61 26 chr6 5401655 5401769 -183877785 + L2 LINE L2 3145 3262 -10 773 289 61 61 chr6 5403979 5404605 -183874949 - HAL1 LINE L1 -30 2477 1852 306 255 68 19 chr6 5404653 5404814 -183874740 - LTR67 LTR ERVL -8 549 381 279 54 0 0 chr6 5405244 5405281 -183874273 + (TG)n Simple_repeat Simple_repeat 2 38 0 1830 182 0 3 chr6 5405321 5405617 -183873937 - AluSx SINE Alu -17 295 1 303 233 181 15 chr6 5405714 5405847 -183873707 - L1MB8 LINE L1 -64 6114 5960 316 103 0 35 chr6 5405847 5405905 -183873649 - Alu SINE Alu -13 289 234 2756 190 91 103 chr6 5405905 5407215 -183872339 - L1ME1 LINE L1 -196 5970 4513 467 236 152 12 chr6 5407215 5407380 -183872174 - MER58A DNA MER1_type 0 224 37 2756 190 91 103 chr6 5407380 5407627 -183871927 - L1ME1 LINE L1 -1653 4513 4264 319 211 46 28 chr6 5407611 5407720 -183871834 - HAL1 LINE L1 -1043 1464 1354 * 198 204 0 45 chr6 5408378 5408422 -183871132 - L2 LINE L2 -1 3271 3230 207 0 0 0 chr6 5409065 5409088 -183870466 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 298 341 112 18 chr6 5409165 5409388 -183870166 + L3b LINE CR1 1272 1515 -68 249 322 99 16 chr6 5410651 5410772 -183868782 + L2 LINE L2 3160 3290 -23 231 234 125 16 chr6 5410958 5411086 -183868468 - MER5B DNA MER1_type -34 144 3 199 50 75 0 chr6 5411465 5411505 -183868049 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 369 240 10 48 chr6 5412003 5412107 -183867447 + MIR3 SINE MIR 109 208 0 251 159 0 0 chr6 5412309 5412353 -183867201 - L3 LINE CR1 -8 1569 1526 * 256 178 0 0 chr6 5412314 5412359 -183867195 - MIR3 SINE MIR -17 191 147 192 77 0 0 chr6 5412631 5412657 -183866897 + (A)n Simple_repeat Simple_repeat 1 26 0 682 340 31 12 chr6 5414092 5414348 -183865206 + MIR SINE MIR 2 262 0 21 0 0 0 chr6 5414351 5414372 -183865182 + AT_rich Low_complexity Low_complexity 1 21 0 1281 159 0 5 chr6 5414432 5414730 -183864824 - MER2 DNA MER2_type 0 345 2 25 31 0 0 chr6 5416379 5416411 -183863143 + AT_rich Low_complexity Low_complexity 1 32 0 2151 136 3 0 chr6 5417890 5418199 -183861355 - AluSx SINE Alu -2 310 1 345 223 136 82 chr6 5419247 5419431 -183860123 + MIR SINE MIR 21 214 -48 332 140 0 0 chr6 5420622 5420682 -183858872 + FRAM/FAM SINE Alu 28 75 -100 236 234 52 0 chr6 5420763 5420840 -183858714 - L1MC4 LINE L1 -1350 6692 6612 671 159 26 0 chr6 5420840 5420991 -183858563 + (TA)n Simple_repeat Simple_repeat 1 155 0 32 26 0 0 chr6 5421003 5421042 -183858512 + AT_rich Low_complexity Low_complexity 1 39 0 2251 76 3 10 chr6 5421395 5421683 -183857871 + AluSc SINE Alu 1 286 -23 232 184 0 0 chr6 5422215 5422253 -183857301 - U6 snRNA snRNA -69 38 1 1344 179 105 10 chr6 5422262 5422558 -183856996 + MER7A DNA MER2_type 21 342 -4 2110 133 0 0 chr6 5423085 5423371 -183856183 - AluSx SINE Alu -26 286 1 2698 153 24 8 chr6 5425154 5425658 -183853896 + L1MC1 LINE L1 5822 6333 0 448 253 48 20 chr6 5425735 5425881 -183853673 - L1MD3 LINE L1 -215 7780 7631 5957 211 84 66 chr6 5425881 5427219 -183852335 - L1MC4a LINE L1 -288 7520 6122 1876 131 0 4 chr6 5427219 5427487 -183852067 - AluSx SINE Alu -30 282 16 5957 211 84 66 chr6 5427487 5428372 -183851182 - L1MC4a LINE L1 -1686 6122 5255 392 318 39 37 chr6 5428479 5428644 -183850910 - L1 LINE L1 -3325 2821 2662 240 35 0 0 chr6 5428644 5428673 -183850881 + (TG)n Simple_repeat Simple_repeat 2 30 0 392 318 39 37 chr6 5428673 5428808 -183850746 - L1 LINE L1 -3484 2662 2529 234 280 31 44 chr6 5428884 5429109 -183850445 - L1 LINE L1 -3687 2459 2238 272 317 86 31 chr6 5429459 5429938 -183849616 - HAL1b LINE L1 -510 838 334 323 347 52 21 chr6 5429999 5430192 -183849362 - HAL1 LINE L1 -1218 1289 1091 212 222 14 42 chr6 5430244 5430316 -183849238 + T-rich Low_complexity Low_complexity 2 71 0 201 39 0 0 chr6 5431047 5431073 -183848481 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 32 0 0 0 chr6 5431533 5431565 -183847989 + AT_rich Low_complexity Low_complexity 1 32 0 408 294 94 0 chr6 5431925 5432105 -183847449 - MIR SINE MIR 0 262 66 191 300 25 25 chr6 5432108 5432188 -183847366 - L2 LINE L2 -37 3276 3197 1547 156 51 0 chr6 5432746 5432802 -183846752 - MER46B DNA MER2_type -2495 236 184 2250 93 3 46 chr6 5432802 5433126 -183846428 - AluSg SINE Alu 0 310 1 1547 156 51 0 chr6 5433126 5433364 -183846190 - MER46B DNA MER2_type -2547 184 52 2353 68 3 19 chr6 5433507 5433817 -183845737 - AluY SINE Alu -6 305 1 267 188 31 0 chr6 5434246 5434310 -183845244 - L1ME2 LINE L1 -10 6154 6089 * 1193 235 92 25 chr6 5434304 5434976 -183844578 - L1ME2 LINE L1 -21 6143 5435 288 0 0 0 chr6 5435069 5435101 -183844453 + (TA)n Simple_repeat Simple_repeat 1 32 0 284 188 72 0 chr6 5435101 5435170 -183844384 + L1ME1 LINE L1 5368 5441 -721 307 252 47 16 chr6 5435346 5435473 -183844081 - L1MEd LINE L1 -5980 139 9 229 363 48 16 chr6 5436510 5436634 -183842920 + MIR3 SINE MIR 14 141 -67 2128 101 3 14 chr6 5437201 5437498 -183842056 + AluSc SINE Alu 1 294 -15 2141 119 0 28 chr6 5438175 5438495 -183841059 - AluSx SINE Alu -1 311 1 28 29 0 0 chr6 5439202 5439237 -183840317 + AT_rich Low_complexity Low_complexity 1 35 0 994 219 22 75 chr6 5439703 5440064 -183839490 + L1ME1 LINE L1 5802 6143 -23 247 263 11 11 chr6 5440091 5440186 -183839368 + MER113 DNA MER1_type? 139 233 -288 1740 162 10 26 chr6 5440337 5440645 -183838909 + AluJo SINE Alu 1 303 -9 326 311 41 16 chr6 5440655 5440777 -183838777 + MIR SINE MIR 20 144 -118 30 27 0 0 chr6 5441365 5441402 -183838152 + AT_rich Low_complexity Low_complexity 1 37 0 47 0 0 0 chr6 5442804 5442851 -183836703 + AT_rich Low_complexity Low_complexity 1 47 0 2014 87 11 4 chr6 5442876 5443142 -183836412 + AluSx SINE Alu 29 296 -16 620 43 98 0 chr6 5443142 5443305 -183836249 + (TA)n Simple_repeat Simple_repeat 1 179 0 25 0 0 0 chr6 5443330 5443355 -183836199 + AT_rich Low_complexity Low_complexity 1 25 0 402 295 31 55 chr6 5443900 5444155 -183835399 + MIR SINE MIR 4 249 -13 183 42 0 0 chr6 5444917 5444941 -183834613 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 2095 115 0 7 chr6 5444941 5445228 -183834326 - AluSx SINE Alu -27 285 1 22 0 0 0 chr6 5445228 5445250 -183834304 + AT_rich Low_complexity Low_complexity 1 22 0 267 279 29 10 chr6 5445531 5445635 -183833919 + CT-rich Low_complexity Low_complexity 2 107 0 319 324 176 9 chr6 5445746 5445968 -183833586 - MIR SINE MIR -1 261 3 204 350 39 82 chr6 5447252 5447508 -183832046 - L2 LINE L2 -19 3253 3009 316 283 116 52 chr6 5447508 5447681 -183831873 - MER5A DNA MER1_type -1 188 5 1218 203 27 34 chr6 5447714 5448150 -183831404 - L1ME1 LINE L1 -4 6162 5628 820 252 48 21 chr6 5448142 5448475 -183831079 - L1ME LINE L1 -3479 2601 2260 * 814 271 66 69 chr6 5448483 5449459 -183830095 - L1ME LINE L1 -4310 1770 780 1339 149 40 4 chr6 5449459 5449687 -183829867 - MER46A DNA MER2_type 0 236 1 814 271 66 69 chr6 5449687 5450139 -183829415 - L1ME LINE L1 -5300 780 328 318 262 41 103 chr6 5450228 5450373 -183829181 - L1ME LINE L1 -5844 226 91 252 214 29 14 chr6 5450632 5450702 -183828852 + CT-rich Low_complexity Low_complexity 3 73 0 503 268 91 63 chr6 5450884 5451246 -183828308 - L1ME4a LINE L1 -1 6120 5749 230 289 13 0 chr6 5451258 5451334 -183828220 - L1ME4a LINE L1 -422 5699 5623 660 163 0 62 chr6 5451507 5451636 -183827918 - FLAM_A SINE Alu -11 122 2 2135 134 0 6 chr6 5451724 5452037 -183827517 - AluSx SINE Alu -1 311 1 1393 198 14 11 chr6 5452047 5452330 -183827224 + MER82 DNA MER2_type 358 641 -12 255 103 0 0 chr6 5452463 5452502 -183827052 + (TG)n Simple_repeat Simple_repeat 1 39 0 692 89 0 0 chr6 5452547 5452637 -183826917 + AluSg SINE Alu 1 90 -220 2015 79 0 0 chr6 5502637 5502890 -183776664 + AluY SINE Alu 59 311 0 705 224 156 29 chr6 5502900 5503105 -183776449 + MIR SINE MIR 11 241 -21 2289 81 0 42 chr6 5503316 5503623 -183775931 - AluSx SINE Alu -16 296 3 258 156 47 16 chr6 5503964 5504028 -183775526 + T-rich Low_complexity Low_complexity 3 68 0 2187 123 0 0 chr6 5504061 5504363 -183775191 + AluSg SINE Alu 1 302 -8 227 100 0 25 chr6 5504365 5504405 -183775149 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 192 61 61 0 chr6 5504627 5504660 -183774894 + MIR SINE MIR 116 150 -112 218 240 0 0 chr6 5505192 5505242 -183774312 - L2 LINE L2 -2 3270 3221 478 307 42 16 chr6 5506417 5506606 -183772948 - MIR SINE MIR 0 262 69 193 143 0 29 chr6 5507441 5507476 -183772078 + MIR SINE MIR 109 142 -120 797 184 126 26 chr6 5507649 5507839 -183771715 - MIR SINE MIR -18 244 36 306 0 0 0 chr6 5508160 5508194 -183771360 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 298 0 18 chr6 5508558 5508615 -183770939 + CT-rich Low_complexity Low_complexity 1 56 0 2636 155 29 31 chr6 5509232 5509749 -183769805 - L1MA9 LINE L1 -22 6290 5775 227 241 48 0 chr6 5509749 5509832 -183769722 + (CATATA)n Simple_repeat Simple_repeat 6 92 0 1162 165 26 35 chr6 5509833 5510063 -183769491 - L1MA9 LINE L1 -524 5788 5561 * 4008 171 58 1 chr6 5510058 5510699 -183768855 - L1MA9 LINE L1 -1777 4369 3675 207 0 0 0 chr6 5510699 5510722 -183768832 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 4008 171 58 1 chr6 5510722 5510857 -183768697 - L1MA9 LINE L1 -2471 3675 3549 409 285 7 35 chr6 5511148 5511292 -183768262 + MIR SINE MIR 67 206 -56 371 220 156 0 chr6 5511642 5511751 -183767803 - MER103 DNA DNA -38 128 3 447 247 227 0 chr6 5511808 5511958 -183767596 + MIR SINE MIR 18 201 -61 479 232 209 38 chr6 5513208 5513419 -183766135 + MIR SINE MIR 14 260 -2 574 298 44 24 chr6 5513943 5514191 -183765363 + MIR SINE MIR 5 257 -5 28 0 0 0 chr6 5515881 5515909 -183763645 + AT_rich Low_complexity Low_complexity 1 28 0 2126 137 3 6 chr6 5516154 5516467 -183763087 + AluJb SINE Alu 1 312 0 1429 218 209 14 chr6 5518498 5519158 -183760396 - LTR50 LTR ERVL -1 794 6 307 250 86 23 chr6 5519823 5519951 -183759603 - MIR SINE MIR -67 195 60 268 311 58 0 chr6 5520069 5520172 -183759382 - MIR SINE MIR -46 216 108 184 301 122 41 chr6 5520282 5520405 -183759149 + MIR3 SINE MIR 10 142 -66 1710 169 14 0 chr6 5522160 5522439 -183757115 + AluJo SINE Alu 5 287 -25 231 146 0 0 chr6 5522447 5522488 -183757066 + (TAAG)n Simple_repeat Simple_repeat 1 41 0 664 118 55 31 chr6 5523647 5523774 -183755780 - L1MB8 LINE L1 -19 6159 6030 1331 198 71 39 chr6 5524916 5525254 -183754300 + MLT1A1 LTR MaLR 6 354 -11 2492 77 0 6 chr6 5525291 5525603 -183753951 + AluSp SINE Alu 1 310 -3 648 310 45 4 chr6 5525625 5525867 -183753687 + MIR SINE MIR 8 259 -3 2380 92 3 0 chr6 5526419 5526722 -183752832 + AluSc SINE Alu 1 304 -5 254 234 234 0 chr6 5526976 5527053 -183752501 - MIR SINE MIR -54 208 114 340 147 80 13 chr6 5527068 5527143 -183752411 - REP3 LTR ERV 0 562 483 1196 187 5 5 chr6 5527144 5527363 -183752191 - AluJb SINE Alu -9 303 85 2003 206 71 21 chr6 5527363 5527475 -183752079 - REP3 LTR ERV -70 492 387 2131 202 53 18 chr6 5527475 5527926 -183751628 - MLT1C LTR MaLR 0 467 1 2003 206 71 21 chr6 5527926 5528279 -183751275 - REP3 LTR ERV -175 387 4 599 264 16 21 chr6 5528413 5528606 -183750948 - LTR16A LTR ERVL -1 449 258 531 300 127 22 chr6 5529896 5530541 -183749013 + L1MEd LINE L1 860 1668 -822 916 264 69 27 chr6 5530610 5531058 -183748496 - LTR40a LTR ERVL -6 513 97 22 35 0 0 chr6 5531131 5531160 -183748394 + AT_rich Low_complexity Low_complexity 1 29 0 420 20 0 0 chr6 5531333 5531382 -183748172 + (TG)n Simple_repeat Simple_repeat 2 50 0 271 272 41 54 chr6 5532045 5532192 -183747362 - L1M4 LINE L1 -3276 2870 2726 236 393 0 0 chr6 5533468 5533636 -183745918 + (CCA)n Simple_repeat Simple_repeat 1 168 0 23 33 0 0 chr6 5534358 5534388 -183745166 + AT_rich Low_complexity Low_complexity 1 30 0 1263 183 201 14 chr6 5534415 5534704 -183744850 - MER2 DNA MER2_type 0 344 2 190 279 0 0 chr6 5534790 5534833 -183744721 + MIR3 SINE MIR 165 207 -1 434 349 92 34 chr6 5537733 5538025 -183741529 - L2 LINE L2 -10 3262 2954 238 262 12 48 chr6 5538181 5538265 -183741289 - L2 LINE L2 -531 2783 2703 530 326 80 46 chr6 5538273 5538449 -183741105 - HAL1b LINE L1 -437 911 742 2205 76 40 7 chr6 5538449 5538750 -183740804 - AluY SINE Alu 0 311 1 530 326 80 46 chr6 5538750 5539076 -183740478 - HAL1b LINE L1 -606 742 392 479 259 75 49 chr6 5539082 5539348 -183740206 - HAL1b LINE L1 -987 361 89 255 122 0 0 chr6 5540062 5540111 -183739443 + (A)n Simple_repeat Simple_repeat 1 49 0 256 159 302 0 chr6 5540284 5540347 -183739207 + MLT1J LTR MaLR 353 434 -77 1578 112 29 8 chr6 5540492 5540733 -183738821 - Tigger4(Zombi) DNA MER2_type 0 2731 2486 430 156 0 0 chr6 5540724 5540788 -183738766 - Tigger4(Zombi) DNA MER2_type -2666 65 2 * 23 33 0 0 chr6 5541184 5541214 -183738340 + AT_rich Low_complexity Low_complexity 1 30 0 589 258 165 56 chr6 5541487 5541948 -183737606 + MLT1J LTR MaLR 1 511 0 854 254 26 10 chr6 5542041 5542234 -183737320 - MER58A DNA MER1_type -28 196 1 815 132 101 141 chr6 5544123 5544350 -183735204 - MER20 DNA MER1_type -1 218 1 1421 178 113 14 chr6 5545167 5545442 -183734112 - AluJo SINE Alu -10 302 1 1036 163 15 49 chr6 5546471 5546674 -183732880 + MLT1A1 LTR MaLR 1 196 -169 999 189 25 15 chr6 5546687 5546888 -183732666 + MLT1A1 LTR MaLR 163 365 0 279 314 146 11 chr6 5547038 5547223 -183732331 + MIR SINE MIR 7 216 -46 21 0 0 0 chr6 5547456 5547477 -183732077 + AT_rich Low_complexity Low_complexity 1 21 0 2280 115 0 0 chr6 5547483 5547788 -183731766 + AluSg SINE Alu 1 305 -5 23 0 0 0 chr6 5548867 5548890 -183730664 + GC_rich Low_complexity Low_complexity 1 23 0 1529 122 37 29 chr6 5550821 5551067 -183728487 - Tigger3(Golem) DNA MER2_type -1 3028 2781 1130 207 10 0 chr6 5551064 5551267 -183728287 - Tigger3(Golem) DNA MER2_type -2824 205 1 * 724 181 111 23 chr6 5556446 5556617 -183722937 - L1MB5 LINE L1 0 6174 5989 397 188 10 10 chr6 5556618 5556714 -183722840 + CT-rich Low_complexity Low_complexity 1 96 0 1188 152 24 5 chr6 5556722 5556932 -183722622 - L1MB5 LINE L1 -711 5467 5254 326 185 12 0 chr6 5556985 5557066 -183722488 + CT-rich Low_complexity Low_complexity 3 84 0 745 217 0 0 chr6 5557185 5557314 -183722240 - FLAM_A SINE Alu -4 129 1 2385 89 26 0 chr6 5557315 5557618 -183721936 - AluSx SINE Alu 0 312 2 352 312 89 58 chr6 5557818 5558302 -183721252 - L1M4 LINE L1 -754 5392 4894 1641 146 45 68 chr6 5558353 5558661 -183720893 - AluJo SINE Alu -11 301 1 426 273 73 12 chr6 5559031 5559196 -183720358 + MIR SINE MIR 5 179 -83 202 204 0 45 chr6 5559196 5559240 -183720314 + L2 LINE L2 3221 3262 -10 223 281 34 0 chr6 5561502 5561591 -183717963 - MIR SINE MIR -152 110 19 2191 125 74 11 chr6 5561674 5562041 -183717513 - MLT1B LTR MaLR 0 390 1 2421 91 0 0 chr6 5562334 5562642 -183716912 + AluSx SINE Alu 1 308 -4 197 231 215 0 chr6 5563125 5563190 -183716364 + MIR SINE MIR 42 120 -88 234 0 0 0 chr6 5564191 5564217 -183715337 + (TG)n Simple_repeat Simple_repeat 2 27 0 1586 194 40 65 chr6 5564573 5565021 -183714533 + LTR56 LTR ERV1 9 445 0 2034 137 0 0 chr6 5565335 5565648 -183713906 - AluSx SINE Alu 0 313 1 251 250 232 9 chr6 5566001 5566113 -183713441 + L2 LINE L2 3175 3311 -2 241 268 0 0 chr6 5566147 5566203 -183713351 + (TATATG)n Simple_repeat Simple_repeat 4 59 0 233 250 0 0 chr6 5566204 5566260 -183713294 - L1MD3 LINE L1 -1328 6667 6612 1791 150 33 13 chr6 5568258 5568564 -183710990 - AluJb SINE Alu 0 312 1 323 102 20 0 chr6 5568655 5568704 -183710850 - Alu SINE Alu -243 57 8 276 270 51 29 chr6 5570385 5570522 -183709032 + MIR3 SINE MIR 65 204 -4 2369 123 6 3 chr6 5570626 5570968 -183708586 + MER2 DNA MER2_type 1 343 -1 216 230 122 0 chr6 5571315 5571389 -183708165 + L2 LINE L2 3186 3268 -4 624 276 84 10 chr6 5571911 5572114 -183707440 + MIR SINE MIR 7 224 -38 229 239 28 28 chr6 5572659 5572730 -183706824 + CT-rich Low_complexity Low_complexity 1 71 0 23 54 0 0 chr6 5572808 5572845 -183706709 + AT_rich Low_complexity Low_complexity 1 37 0 523 229 15 8 chr6 5572868 5572999 -183706555 + L2 LINE L2 3182 3313 0 703 288 14 18 chr6 5573624 5573846 -183705708 - MIR SINE MIR -36 226 6 195 42 0 0 chr6 5574307 5574331 -183705223 + (T)n Simple_repeat Simple_repeat 1 24 0 1988 72 12 0 chr6 5574578 5574828 -183704726 - AluY SINE Alu -58 253 1 230 326 8 47 chr6 5574916 5575045 -183704509 + MIR SINE MIR 28 151 -111 1289 257 58 58 chr6 5575045 5575527 -183704027 + HAL1 LINE L1 1 482 -2025 724 268 38 1 chr6 5575730 5575943 -183703611 - MIR SINE MIR -13 249 31 591 275 35 45 chr6 5576162 5576449 -183703105 + HAL1 LINE L1 2224 2507 0 257 372 0 0 chr6 5577466 5577552 -183702002 - L2 LINE L2 -13 3259 3174 230 290 194 0 chr6 5577773 5577866 -183701688 - L2 LINE L2 0 3313 3203 2403 161 37 37 chr6 5578791 5579225 -183700329 + Tigger2a DNA MER2_type 1 434 0 1197 207 27 3 chr6 5579424 5579867 -183699687 - MLT1D LTR MaLR 0 505 1 2286 104 7 0 chr6 5580602 5580900 -183698654 - AluSx SINE Alu -12 300 1 250 218 46 11 chr6 5581093 5581180 -183698374 + (TA)n Simple_repeat Simple_repeat 1 90 0 742 222 81 30 chr6 5581874 5582054 -183697500 + MIR SINE MIR 17 213 -49 1976 109 4 14 chr6 5582054 5582329 -183697225 + AluSp SINE Alu 33 304 -9 742 222 81 30 chr6 5582329 5582382 -183697172 + MIR SINE MIR 213 262 0 296 236 0 28 chr6 5583234 5583306 -183696248 - MIR3 SINE MIR -1 207 138 184 288 25 50 chr6 5583439 5583519 -183696035 - L2 LINE L2 -77 3195 3118 204 222 0 0 chr6 5584182 5584227 -183695327 + (TTCA)n Simple_repeat Simple_repeat 4 48 0 1840 169 0 16 chr6 5584413 5584721 -183694833 + AluJb SINE Alu 1 303 -9 884 305 150 27 chr6 5584848 5586065 -183693489 - L2 LINE L2 -420 2894 1528 817 234 53 13 chr6 5586792 5587019 -183692535 + MIR SINE MIR 14 249 -13 270 196 144 21 chr6 5589045 5589142 -183690412 + L3 LINE CR1 1278 1386 -191 4076 111 37 0 chr6 5590678 5591274 -183688280 + L1PA13 LINE L1 5546 6163 0 2197 115 0 0 chr6 5591289 5591585 -183687969 + AluSg SINE Alu 1 296 -14 350 247 22 0 chr6 5591727 5591816 -183687738 - MIR3 SINE MIR -4 204 114 228 316 13 3 chr6 5592631 5592723 -183686831 + MIR SINE MIR 12 106 -102 2346 94 3 10 chr6 5592738 5593047 -183686507 - AluSq SINE Alu -6 307 1 221 242 133 55 chr6 5593048 5593176 -183686378 + MIR SINE MIR 88 225 -37 198 327 158 0 chr6 5594449 5594550 -183685004 + L2 LINE L2 3137 3253 -19 240 111 0 0 chr6 5598245 5598281 -183681273 + (A)n Simple_repeat Simple_repeat 1 36 0 307 354 12 43 chr6 5598887 5599051 -183680503 - MIR3 SINE MIR -27 181 23 181 227 0 0 chr6 5599138 5599182 -183680372 + L2 LINE L2 3261 3304 -9 360 0 0 0 chr6 5599251 5599291 -183680263 + (CA)n Simple_repeat Simple_repeat 2 41 0 191 328 17 0 chr6 5601834 5601892 -183677662 + L2 LINE L2 3128 3186 -86 329 226 0 43 chr6 5604662 5604755 -183674799 - L1ME4a LINE L1 -74 6047 5959 701 288 133 20 chr6 5604861 5605346 -183674208 + L1ME4a LINE L1 5310 5837 -284 299 272 65 0 chr6 5605483 5605575 -183673979 + L1ME4a LINE L1 5997 6094 -27 463 289 187 18 chr6 5606683 5607441 -183672113 - L2 LINE L2 -1 3312 2376 3487 71 2 0 chr6 5607655 5608106 -183671448 - L1PA8 LINE L1 0 6172 5721 265 224 0 45 chr6 5610135 5610202 -183669352 + L2 LINE L2 3200 3263 -9 44751 42 4 0 chr6 5610252 5616388 -183663166 - L1PA4 LINE L1 -1 6154 1 184 340 0 0 chr6 5616521 5616574 -183662980 - L2 LINE L2 -15 3257 3205 1371 254 172 12 chr6 5617618 5618150 -183661404 - MLT1G LTR MaLR -3 587 14 24 0 0 0 chr6 5618578 5618602 -183660952 + AT_rich Low_complexity Low_complexity 1 24 0 1643 176 7 27 chr6 5618773 5619074 -183660480 + AluJo SINE Alu 1 295 -17 580 274 65 11 chr6 5619520 5619706 -183659848 - MIR SINE MIR -6 256 61 586 293 116 19 chr6 5619943 5620228 -183659326 + L1MC/D LINE L1 5315 5625 -599 22 0 0 0 chr6 5621936 5621958 -183657596 + AT_rich Low_complexity Low_complexity 1 22 0 2076 141 128 16 chr6 5622175 5622558 -183656996 - MSTA LTR MaLR -2 426 1 365 250 98 8 chr6 5622781 5622913 -183656641 - MLT1I LTR MaLR 0 409 266 438 167 12 0 chr6 5623449 5623533 -183656021 + MER5A DNA MER1_type 20 104 -85 1715 88 0 5 chr6 5623562 5623778 -183655776 - AluSg/x SINE Alu -15 297 83 358 280 189 0 chr6 5623822 5623965 -183655589 - MER5B DNA MER1_type -3 175 6 2087 94 36 0 chr6 5624460 5624735 -183654819 - AluSg SINE Alu -14 296 12 1956 159 47 6 chr6 5628149 5628489 -183651065 - MLT1A1 LTR MaLR -1 364 11 383 193 34 0 chr6 5628926 5629014 -183650540 + MIR SINE MIR 122 212 -50 24 0 0 0 chr6 5629060 5629084 -183650470 + AT_rich Low_complexity Low_complexity 1 24 0 2109 160 0 3 chr6 5630047 5630384 -183649170 - MER1B DNA MER1_type -1 336 1 1723 142 0 12 chr6 5632724 5632978 -183646576 - AluJo SINE Alu -24 288 38 336 216 0 0 chr6 5633723 5633820 -183645734 + (TG)n Simple_repeat Simple_repeat 1 97 0 1462 293 75 11 chr6 5634424 5635039 -183644515 + L1MEc LINE L1 31 684 -5712 2763 170 135 121 chr6 5635040 5635339 -183644215 + L1MC3 LINE L1 6757 7050 -735 276 30 0 0 chr6 5635339 5635372 -183644182 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 2763 170 135 121 chr6 5635372 5635407 -183644147 + L1MC3 LINE L1 7050 7083 -702 260 234 26 13 chr6 5635407 5635484 -183644070 + MLT1F1 LTR MaLR 33 110 -457 2763 170 135 121 chr6 5635484 5636074 -183643480 + L1MC3 LINE L1 7083 7772 -13 226 110 121 55 chr6 5636074 5636165 -183643389 - MER63 DNA MER1_type -91 970 874 189 337 23 12 chr6 5636644 5636730 -183642824 - MIR SINE MIR -149 113 27 22 0 0 0 chr6 5638020 5638042 -183641512 + AT_rich Low_complexity Low_complexity 1 22 0 2278 113 0 0 chr6 5638794 5639097 -183640457 + AluSx SINE Alu 1 300 -12 650 301 74 5 chr6 5639109 5639325 -183640229 - MIR SINE MIR -19 243 13 3618 170 29 42 chr6 5639380 5640144 -183639410 - L1MB8 LINE L1 -51 6127 5374 331 252 119 50 chr6 5640153 5640431 -183639123 - L1MC5 LINE L1 -182 7779 7483 3714 169 69 90 chr6 5640488 5641397 -183638157 - MER21A LTR ERV1 -26 905 16 363 44 0 0 chr6 5641397 5641442 -183638112 + (TG)n Simple_repeat Simple_repeat 2 46 0 914 154 37 56 chr6 5641483 5641697 -183637857 - L1MC5 LINE L1 -494 7467 7258 21 0 0 0 chr6 5641753 5641774 -183637780 + AT_rich Low_complexity Low_complexity 1 21 0 257 143 24 0 chr6 5641805 5641847 -183637707 - L1MC5 LINE L1 -737 7224 7182 252 0 0 0 chr6 5641960 5641988 -183637566 + (TA)n Simple_repeat Simple_repeat 1 28 0 2019 108 4 0 chr6 5641988 5642265 -183637289 - AluSx SINE Alu -34 278 1 322 333 63 24 chr6 5642326 5642452 -183637102 + L2 LINE L2 3142 3272 0 1775 164 3 22 chr6 5643152 5643529 -183636025 + AluJb SINE Alu 1 371 0 208 273 73 0 chr6 5644564 5644619 -183634935 - L2 LINE L2 -16 3297 3239 5117 183 86 64 chr6 5644684 5644817 -183634737 - Charlie1a DNA MER1_type -1325 1436 1307 1419 179 13 43 chr6 5644817 5645119 -183634435 + AluJo SINE Alu 3 295 -17 5117 183 86 64 chr6 5645119 5646386 -183633168 - Charlie1a DNA MER1_type -1454 1307 6 275 317 54 32 chr6 5646586 5646807 -183632747 - L2 LINE L2 -361 2953 2728 364 311 92 41 chr6 5647395 5647591 -183631963 + MIR SINE MIR 6 211 -51 385 329 35 21 chr6 5648774 5648917 -183630637 - L3 LINE CR1 -154 1423 1279 265 250 125 39 chr6 5648919 5649047 -183630507 - L2 LINE L2 -16 3297 3159 640 293 139 5 chr6 5649488 5649703 -183629851 + MIR SINE MIR 13 256 -6 2062 106 3 0 chr6 5649705 5649998 -183629556 + AluSx SINE Alu 1 294 -18 294 269 123 58 chr6 5651049 5651220 -183628334 + MIR SINE MIR 67 248 -14 1029 212 5 5 chr6 5653908 5654106 -183625448 - MER20 DNA MER1_type -21 198 1 800 217 128 10 chr6 5654840 5655043 -183624511 - MIR SINE MIR 0 262 36 249 313 21 10 chr6 5655306 5655402 -183624152 + CT-rich Low_complexity Low_complexity 1 97 0 391 200 27 0 chr6 5656180 5656255 -183623299 - L2 LINE L2 -11 3261 3185 253 312 11 11 chr6 5656392 5656485 -183623069 + MIR SINE MIR 162 254 -8 198 329 89 0 chr6 5656936 5657015 -183622539 - L2 LINE L2 -17 3255 3170 487 299 77 11 chr6 5657822 5658052 -183621502 + MIR SINE MIR 13 261 -1 367 357 14 0 chr6 5658641 5658784 -183620770 - MIR SINE MIR -10 252 108 318 67 0 0 chr6 5658854 5658899 -183620655 + (CATA)n Simple_repeat Simple_repeat 2 46 0 424 272 32 10 chr6 5659271 5659382 -183620172 - MIR SINE MIR -88 120 6 1579 203 73 35 chr6 5660058 5660482 -183619072 - MLT1F LTR MaLR -102 440 1 2050 127 0 0 chr6 5661302 5661594 -183617960 + AluSg SINE Alu 1 292 -18 375 237 73 73 chr6 5661672 5661941 -183617613 + MLT1J LTR MaLR 62 364 -147 195 100 0 0 chr6 5661988 5662018 -183617536 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1658 154 11 7 chr6 5662029 5662301 -183617253 - AluJo SINE Alu -39 273 1 1138 175 75 12 chr6 5663010 5663250 -183616304 - L1MD2 LINE L1 -275 6084 5830 934 129 0 8 chr6 5663265 5663397 -183616157 + FLAM_C SINE Alu 1 131 -2 577 297 91 18 chr6 5663908 5664127 -183615427 - MIR SINE MIR -15 247 13 2234 99 0 3 chr6 5665690 5666003 -183613551 - AluSx SINE Alu 0 312 1 533 290 43 6 chr6 5668461 5668623 -183610931 - MIR SINE MIR -75 187 20 23 68 0 0 chr6 5668901 5668945 -183610609 + AT_rich Low_complexity Low_complexity 1 44 0 1766 159 0 3 chr6 5669597 5669887 -183609667 - AluJb SINE Alu -19 293 5 187 282 68 68 chr6 5670724 5670827 -183608727 + L2 LINE L2 3158 3260 -12 1368 237 90 62 chr6 5670977 5671557 -183607997 - L2 LINE L2 -221 3092 2482 490 283 7 7 chr6 5671560 5671698 -183607856 - MLT1F LTR MaLR -404 138 1 316 236 0 2 chr6 5672680 5672754 -183606800 - MIR SINE MIR -84 124 52 288 223 204 51 chr6 5673356 5673513 -183606041 - L2 LINE L2 -571 2743 2563 501 309 84 50 chr6 5674037 5674357 -183605197 - L2 LINE L2 -1 3271 2941 298 307 111 33 chr6 5676769 5676922 -183602632 - MIR3 SINE MIR -24 184 20 218 317 120 7 chr6 5676994 5677136 -183602418 + MIR SINE MIR 61 218 -44 276 287 67 28 chr6 5678133 5678339 -183601215 - MIR SINE MIR -1 261 2 1739 293 121 36 chr6 5678693 5679255 -183600299 - L1MEd LINE L1 -863 1627 1114 2327 66 33 0 chr6 5679255 5679557 -183599997 - L1PA7 LINE L1 -4 6150 5839 1739 293 121 36 chr6 5679557 5680051 -183599503 - L1MEd LINE L1 -1376 1114 664 189 0 0 0 chr6 5680051 5680072 -183599482 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1739 293 121 36 chr6 5680072 5680335 -183599219 - L1MEd LINE L1 -1826 664 109 1994 130 154 16 chr6 5680369 5680738 -183598816 - MSTA LTR MaLR 0 428 9 279 257 14 40 chr6 5681697 5681771 -183597783 + MIR SINE MIR 16 87 -175 287 315 41 20 chr6 5682285 5682431 -183597123 + MARNA DNA Mariner 196 344 -242 320 356 19 0 chr6 5683104 5683208 -183596346 - MIR SINE MIR -109 153 48 507 307 21 107 chr6 5683214 5683589 -183595965 + L2 LINE L2 2930 3272 0 233 285 220 32 chr6 5683737 5683923 -183595631 + L3 LINE CR1 1259 1479 -98 180 0 0 0 chr6 5685860 5685880 -183593674 + (A)n Simple_repeat Simple_repeat 1 20 0 330 122 0 0 chr6 5686078 5686127 -183593427 - L1MB4 LINE L1 -302 5878 5830 242 182 164 18 chr6 5686137 5686192 -183593362 - MIR SINE MIR -119 143 81 181 169 92 77 chr6 5686138 5686203 -183593351 + MIR3 SINE MIR 131 196 -12 * 280 268 141 64 chr6 5686240 5686460 -183593094 - MIR SINE MIR 0 262 26 1473 159 0 23 chr6 5687272 5687529 -183592025 + AluJo SINE Alu 52 302 -10 526 298 58 6 chr6 5687552 5687723 -183591831 - MIR3 SINE MIR -8 200 21 700 276 43 17 chr6 5688127 5688359 -183591195 - MIR SINE MIR -16 246 9 190 253 242 10 chr6 5689839 5689938 -183589616 + L2 LINE L2 3150 3271 -1 2799 161 61 37 chr6 5690710 5691116 -183588438 - L1MB5 LINE L1 -1 6173 5745 2341 89 0 0 chr6 5691116 5691407 -183588147 - AluSx SINE Alu -21 291 1 2799 161 61 37 chr6 5691407 5691621 -183587933 - L1MB5 LINE L1 -429 5745 5538 718 255 34 24 chr6 5691621 5691829 -183587725 + MIR SINE MIR 43 252 -10 2180 193 22 12 chr6 5692658 5693340 -183586214 - L1MB5 LINE L1 -658 5526 4839 288 77 0 0 chr6 5694443 5694482 -183585072 + (CTG)n Simple_repeat Simple_repeat 1 39 0 234 361 36 36 chr6 5694483 5694649 -183584905 - MIR3 SINE MIR -24 184 19 274 327 30 42 chr6 5694970 5695135 -183584419 + MER5B DNA MER1_type 13 175 -3 1385 161 94 58 chr6 5696799 5696987 -183582567 - MER7A DNA MER2_type -2692 346 141 2476 159 31 2 chr6 5696987 5697403 -183582151 + MSTA LTR MaLR 1 428 0 1385 161 94 58 chr6 5697403 5697543 -183582011 - MER7A DNA MER2_type -2897 141 8 207 330 33 22 chr6 5697624 5697715 -183581839 - MIR SINE MIR -79 183 92 1432 139 28 5 chr6 5697835 5698051 -183581503 + AluJo SINE Alu 86 306 -6 360 269 40 74 chr6 5698396 5698545 -183581009 + MIR SINE MIR 119 262 0 373 335 30 30 chr6 5698558 5698722 -183580832 - MIR3 SINE MIR -5 203 40 218 303 15 0 chr6 5699671 5699737 -183579817 - L2 LINE L2 -49 3223 3157 208 147 0 0 chr6 5700412 5700446 -183579108 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 230 190 172 78 chr6 5700586 5700702 -183578852 + MIR SINE MIR 27 153 -109 1517 203 80 45 chr6 5701441 5701990 -183577564 + L1ME LINE L1 4860 5423 -741 481 183 44 36 chr6 5701988 5702125 -183577429 + L1ME2 LINE L1 5918 6055 -109 * 225 0 0 0 chr6 5702125 5702150 -183577404 + (T)n Simple_repeat Simple_repeat 1 25 0 426 20 0 0 chr6 5702181 5702232 -183577322 + (TC)n Simple_repeat Simple_repeat 2 52 0 807 157 22 30 chr6 5702232 5702366 -183577188 - FLAM_C SINE Alu 0 133 1 564 179 8 8 chr6 5702367 5702484 -183577070 + L1ME2 LINE L1 6039 6155 -9 540 246 63 0 chr6 5703295 5703437 -183576117 + MIR SINE MIR 56 206 -56 7355 51 0 0 chr6 5703514 5704677 -183574877 - L1PA6 LINE L1 0 6154 4995 707 148 15 15 chr6 5704677 5704812 -183574742 + L1MB7 LINE L1 6050 6184 0 341 154 14 42 chr6 5704812 5704894 -183574660 + L1ME LINE L1 5595 5665 -501 189 279 180 8 chr6 5705220 5705342 -183574212 - MER5A DNA MER1_type -3 186 44 2227 201 19 11 chr6 5705479 5705941 -183573613 + MLT1C LTR MaLR 2 467 0 245 211 28 0 chr6 5706694 5706765 -183572789 + CT-rich Low_complexity Low_complexity 1 73 0 244 291 0 0 chr6 5707379 5707434 -183572120 + MIR SINE MIR 7 61 -201 3110 179 91 24 chr6 5707601 5708323 -183571231 + MER21A LTR ERV1 1 771 -160 196 293 83 53 chr6 5708523 5708656 -183570898 - MIR SINE MIR -45 217 81 211 303 40 0 chr6 5709389 5709465 -183570089 - MIR3 SINE MIR -6 202 124 275 258 0 16 chr6 5710055 5710117 -183569437 + MIR SINE MIR 89 149 -113 391 118 24 24 chr6 5710119 5710204 -183569350 - LTR67 LTR ERVL -2 555 471 2668 174 41 6 chr6 5710205 5710739 -183568815 + L1MB5 LINE L1 5572 6124 -50 985 233 41 23 chr6 5711756 5712099 -183567455 - L1MC4 LINE L1 -5 8037 7689 436 205 103 0 chr6 5712099 5712207 -183567347 - L1 LINE L1 -3294 2852 2736 256 326 31 0 chr6 5712256 5712354 -183567200 - L1ME LINE L1 -5625 445 345 345 82 0 0 chr6 5713151 5713200 -183566354 + (CA)n Simple_repeat Simple_repeat 2 50 0 634 197 61 3 chr6 5713617 5713802 -183565752 - MLT1B LTR MaLR 0 390 217 3542 86 2 4 chr6 5713802 5714279 -183565275 - L1PA13 LINE L1 -2 6161 5686 634 197 61 3 chr6 5714279 5714403 -183565151 - MLT1B LTR MaLR -173 217 1 1458 144 164 12 chr6 5714724 5714980 -183564574 + AluY SINE Alu 1 295 -16 5315 146 37 39 chr6 5715111 5715295 -183564259 - L1MA9 LINE L1 0 6312 6129 2512 85 0 0 chr6 5715295 5715601 -183563953 - AluY SINE Alu -5 306 1 5315 146 37 39 chr6 5715601 5716686 -183562868 - L1MA9 LINE L1 -183 6129 5043 251 146 21 0 chr6 5716684 5716732 -183562822 + L1MA9 LINE L1 4989 5037 -1109 * 826 305 71 24 chr6 5716735 5717155 -183562399 + L2 LINE L2 1033 1472 -1842 1986 122 4 4 chr6 5717714 5717992 -183561562 + AluY SINE Alu 1 278 -33 200 35 35 0 chr6 5717992 5718021 -183561533 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 694 272 111 48 chr6 5718234 5718949 -183560605 - L2 LINE L2 -6 3307 2544 558 230 115 48 chr6 5719068 5719277 -183560277 - MER31B LTR ERV1 0 466 244 249 268 28 0 chr6 5719286 5719357 -183560197 - MER31B LTR ERV1 -382 84 12 2843 65 3 3 chr6 5719358 5719712 -183559842 - THE1A LTR MaLR -1 354 1 12311 82 4 1 chr6 5719712 5721287 -183558267 - THE1A-int LTR MaLR 0 1580 1 2789 80 11 0 chr6 5721287 5721638 -183557916 - THE1A LTR MaLR 0 355 1 403 247 123 31 chr6 5721659 5721821 -183557733 - L2 LINE L2 -940 2374 2198 2346 159 7 27 chr6 5721913 5722316 -183557238 + MSTD LTR MaLR 2 396 0 747 219 47 47 chr6 5722543 5722775 -183556779 - MLT1A2 LTR MaLR 0 365 134 283 95 24 0 chr6 5722775 5722817 -183556737 - MLT1A1 LTR MaLR 0 457 415 1333 99 0 0 chr6 5722818 5723010 -183556544 + L1MA2 LINE L1 6113 6304 0 1038 183 46 118 chr6 5723031 5723397 -183556157 - MLT1A1 LTR MaLR -25 340 1 2587 209 32 9 chr6 5723406 5723933 -183555621 - MLT1A1-int LTR MaLR -1 1734 1196 1181 197 13 26 chr6 5723935 5724169 -183555385 - MLT2B3 LTR ERVL -237 317 87 387 188 0 0 chr6 5724246 5724315 -183555239 - MLT2B3 LTR ERVL -484 70 2 765 128 78 35 chr6 5724318 5724459 -183555095 - MLT1A2 LTR MaLR -227 147 1 2237 122 0 0 chr6 5724604 5724908 -183554646 - AluSx SINE Alu -8 304 1 978 185 0 0 chr6 5724968 5725130 -183554424 - FAM SINE Alu -13 162 1 420 71 0 0 chr6 5725605 5725661 -183553893 + (TG)n Simple_repeat Simple_repeat 1 56 0 1886 77 0 0 chr6 5725661 5725883 -183553671 - AluSq SINE Alu -91 222 1 466 277 69 23 chr6 5725939 5726190 -183553364 - L1ME LINE L1 -317 5804 5584 234 0 0 0 chr6 5727785 5727811 -183551743 + (TC)n Simple_repeat Simple_repeat 1 26 0 366 340 39 0 chr6 5728985 5729188 -183550366 + L1ME3A LINE L1 5727 5937 -233 1552 194 154 19 chr6 5729207 5729254 -183550300 + MSTA LTR MaLR 1 40 -388 2301 130 13 24 chr6 5729254 5729632 -183549922 + THE1C LTR MaLR 1 374 -1 1552 194 154 19 chr6 5729632 5729961 -183549593 + MSTA LTR MaLR 40 428 0 9868 160 25 2 chr6 5729961 5731574 -183547980 + THE1C-int LTR MaLR 1 1650 -1 1913 170 154 0 chr6 5731581 5731952 -183547602 + MSTA LTR MaLR 1 428 0 315 263 0 40 chr6 5732124 5732223 -183547331 + L1MC5 LINE L1 7847 7941 -20 266 232 21 0 chr6 5733074 5733169 -183546385 + CT-rich Low_complexity Low_complexity 1 97 0 225 329 102 7 chr6 5733242 5733379 -183546175 + L2 LINE L2 3121 3270 -2 576 116 0 0 chr6 5733380 5733475 -183546079 + (GGAA)n Simple_repeat Simple_repeat 1 95 0 4558 184 15 3 chr6 5733673 5734551 -183545003 + L1MB3 LINE L1 5273 6160 -23 1044 216 73 85 chr6 5735089 5735468 -183544086 + MLT2D LTR ERVL 1 376 -38 225 0 0 0 chr6 5735468 5735493 -183544061 + (CA)n Simple_repeat Simple_repeat 2 26 0 1044 216 73 85 chr6 5735493 5735524 -183544030 + MLT2D LTR ERVL 376 406 -8 314 232 77 97 chr6 5735691 5735898 -183543656 - L2 LINE L2 -217 3055 2853 1914 201 40 25 chr6 5736145 5736671 -183542883 + MER74A LTR ERVL 1 534 -24 13421 115 37 16 chr6 5737017 5739172 -183540382 - Tigger1 DNA MER2_type -219 2199 1 4194 145 26 0 chr6 5743237 5743926 -183535628 - L1MC1 LINE L1 -5 6328 5622 522 266 40 40 chr6 5743953 5744126 -183535428 + MER5B DNA MER1_type 4 176 -2 326 222 16 0 chr6 5744275 5744338 -183535216 + L1MCa LINE L1 2005 2068 -4358 366 23 0 0 chr6 5744355 5744398 -183535156 + (GA)n Simple_repeat Simple_repeat 2 44 0 1743 133 0 72 chr6 5744398 5744545 -183535009 - AluJo SINE Alu -40 272 155 2055 107 0 38 chr6 5744545 5744835 -183534719 - AluSg SINE Alu -12 298 20 1743 133 0 72 chr6 5744835 5744980 -183534574 - AluJo SINE Alu -157 155 1 2223 89 0 3 chr6 5745405 5745687 -183533867 - AluSg SINE Alu -16 294 14 273 311 10 10 chr6 5746011 5746114 -183533440 + C-rich Low_complexity Low_complexity 1 103 0 4641 177 17 6 chr6 5747153 5748039 -183531515 + L1MB3 LINE L1 5273 6168 -15 2257 99 3 0 chr6 5749653 5749946 -183529608 - AluSq SINE Alu -19 294 1 257 0 30 0 chr6 5750115 5750148 -183529406 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 4749 138 87 11 chr6 5750162 5750194 -183529360 + L1MA7 LINE L1 5282 5310 -981 2285 137 8 27 chr6 5750194 5750483 -183529071 + MER47A DNA MER2_type 1 283 -2040 2104 149 0 0 chr6 5750483 5750792 -183528762 - AluJb SINE Alu -3 309 1 2285 137 8 27 chr6 5750792 5750875 -183528679 + MER47A DNA MER2_type 283 366 0 4749 138 87 11 chr6 5750875 5751776 -183527778 + L1MA7 LINE L1 5310 6286 -5 411 260 31 8 chr6 5753935 5754062 -183525492 - MIR SINE MIR -109 153 24 293 238 60 46 chr6 5754238 5754389 -183525165 + Charlie7 DNA MER1_type 2444 2596 -16 318 239 12 153 chr6 5755002 5755165 -183524389 + MIR SINE MIR 117 256 -6 255 200 212 12 chr6 5755174 5755259 -183524295 + MIR SINE MIR 65 166 -96 317 95 0 0 chr6 5755262 5755304 -183524250 - 5S rRNA rRNA -79 42 1 564 332 45 7 chr6 5755376 5755611 -183523943 + MIR SINE MIR 17 259 -3 558 282 37 31 chr6 5755636 5755776 -183523778 - MIR SINE MIR -39 223 80 2034 133 41 0 chr6 5755776 5756070 -183523484 + AluSx SINE Alu 1 306 -6 558 282 37 31 chr6 5756070 5756092 -183523462 - MIR SINE MIR -182 80 60 1794 175 3 19 chr6 5756918 5757226 -183522328 + AluJb SINE Alu 2 304 -8 788 144 6 18 chr6 5757226 5757393 -183522161 + GA-rich Low_complexity Low_complexity 1 165 0 228 306 113 16 chr6 5757475 5757599 -183521955 + MIR SINE MIR 73 208 -54 269 189 11 111 chr6 5757876 5757966 -183521588 + MIR SINE MIR 82 162 -100 258 188 34 26 chr6 5758054 5758171 -183521383 + (TAA)n Simple_repeat Simple_repeat 1 118 0 6992 61 12 45 chr6 5759668 5760649 -183518905 - SVA Other Other -5 1381 433 5885 67 27 12 chr6 5760662 5761481 -183518073 - SVA Other Other -555 831 1 403 268 36 7 chr6 5761488 5761626 -183517928 - L1ME LINE L1 -538 5583 5442 2139 88 4 0 chr6 5761751 5762013 -183517541 + AluSq SINE Alu 1 263 -50 191 59 0 29 chr6 5762033 5762067 -183517487 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 360 185 15 0 chr6 5762850 5762915 -183516639 + MIR SINE MIR 82 147 -61 296 284 191 31 chr6 5763255 5763417 -183516137 - MIR SINE MIR -54 208 21 233 229 9 0 chr6 5763848 5763953 -183515601 + (AGGTG)n Simple_repeat Simple_repeat 5 110 0 211 240 16 0 chr6 5763967 5764092 -183515462 + (AGGTG)n Simple_repeat Simple_repeat 3 129 0 213 243 43 0 chr6 5764114 5764184 -183515370 + (AGGTG)n Simple_repeat Simple_repeat 3 75 0 503 289 64 6 chr6 5765139 5765295 -183514259 + MIR3 SINE MIR 37 201 -7 180 233 200 44 chr6 5766201 5766291 -183513263 + MIR SINE MIR 41 144 -118 2615 244 41 21 chr6 5766840 5767645 -183511909 - L1ME3A LINE L1 -76 6094 5274 403 252 132 38 chr6 5768531 5768690 -183510864 - L2 LINE L2 -1 3312 3139 1298 266 51 58 chr6 5769415 5770021 -183509533 - MLT1L LTR MaLR 0 615 14 302 241 198 19 chr6 5770405 5770541 -183509013 + MIR SINE MIR 14 176 -86 241 137 196 0 chr6 5770850 5770901 -183508653 - MLT1J1 LTR MaLR -385 61 1 182 321 38 0 chr6 5771123 5771176 -183508378 + L2 LINE L2 3205 3259 -13 400 228 117 0 chr6 5771456 5771601 -183507953 + LTR16C LTR ERVL 330 491 0 527 282 19 0 chr6 5772343 5772499 -183507055 + LTR16A LTR ERVL 111 269 -181 322 273 111 0 chr6 5772547 5772646 -183506908 + LTR16A LTR ERVL 341 450 0 388 293 76 19 chr6 5773018 5773175 -183506379 + L2 LINE L2 2503 2668 -646 387 361 47 0 chr6 5773752 5773943 -183505611 + L2 LINE L2 3106 3305 -8 254 312 192 16 chr6 5774522 5774647 -183504907 - MIR3 SINE MIR -29 179 33 204 242 15 15 chr6 5774671 5774737 -183504817 + CT-rich Low_complexity Low_complexity 2 67 0 21 36 0 0 chr6 5776099 5776127 -183503427 + AT_rich Low_complexity Low_complexity 1 28 0 993 261 92 11 chr6 5776629 5776974 -183502580 + MLT1J LTR MaLR 1 373 -138 1899 144 89 53 chr6 5776974 5777060 -183502494 - MLT2D LTR ERVL -2 518 437 243 0 0 0 chr6 5777060 5777087 -183502467 + (CA)n Simple_repeat Simple_repeat 2 28 0 1899 144 89 53 chr6 5777087 5777392 -183502162 - MLT2D LTR ERVL -83 437 38 1958 163 12 65 chr6 5777392 5777502 -183502052 + MLT1B LTR MaLR 1 115 -275 1919 90 12 102 chr6 5777502 5777834 -183501720 + AluSx SINE Alu 1 302 -10 1958 163 12 65 chr6 5777834 5778135 -183501419 + MLT1B LTR MaLR 115 390 0 1899 144 89 53 chr6 5778135 5778175 -183501379 - MLT2D LTR ERVL -482 38 1 313 327 170 44 chr6 5778305 5778757 -183500797 - L2 LINE L2 -570 2744 2236 310 326 28 14 chr6 5779371 5779515 -183500039 + MIR SINE MIR 109 254 -8 548 297 50 41 chr6 5780417 5780636 -183498918 - MIR SINE MIR -26 236 16 4748 134 7 67 chr6 5781612 5782559 -183496995 - L1MB3 LINE L1 -9 6174 5284 229 277 62 0 chr6 5782605 5782670 -183496884 - MIR SINE MIR -117 145 77 7632 37 0 0 chr6 5782701 5783957 -183495597 - L1PA5 LINE L1 0 6154 4900 6609 167 36 10 chr6 5784204 5784824 -183494730 + L1MA9 LINE L1 4022 4624 -1688 2178 140 0 0 chr6 5784824 5785124 -183494430 + AluSx SINE Alu 1 300 -12 6609 167 36 10 chr6 5785124 5786667 -183492887 + L1MA9 LINE L1 4624 6312 0 972 197 55 144 chr6 5786692 5787355 -183492199 + MLT1D LTR MaLR 14 505 0 563 225 110 0 chr6 5787460 5787633 -183491921 - MIR SINE MIR 0 262 71 405 185 12 12 chr6 5788177 5788258 -183491296 + L1MB1 LINE L1 5685 5765 -401 693 148 58 26 chr6 5788258 5788406 -183491148 + L1MB8 LINE L1 6018 6177 -1 1425 182 28 18 chr6 5789166 5789370 -183490184 + MER33 DNA MER1_type 1 201 -2384 2071 119 69 28 chr6 5789370 5789730 -183489824 + THE1C LTR MaLR 1 375 0 1425 182 28 18 chr6 5789730 5789856 -183489698 + MER33 DNA MER1_type 201 324 0 231 357 49 16 chr6 5790239 5790424 -183489130 - L2 LINE L2 -971 2343 2153 572 256 111 14 chr6 5790529 5790736 -183488818 + MLT1G LTR MaLR 61 287 -303 640 262 6 17 chr6 5790770 5790942 -183488612 + MLT1G LTR MaLR 421 590 0 190 287 178 0 chr6 5790945 5791046 -183488508 + MIR SINE MIR 134 252 -10 264 322 134 25 chr6 5791096 5791379 -183488175 - L3 LINE CR1 -256 1321 1008 717 319 58 25 chr6 5791429 5791705 -183487849 - L3 LINE CR1 -824 753 469 326 157 0 0 chr6 5791968 5792019 -183487535 + L1MB1 LINE L1 5817 5867 -301 4347 166 43 15 chr6 5792320 5793134 -183486420 + L1MA10 LINE L1 5487 6323 -11 1978 130 0 11 chr6 5793149 5793434 -183486120 - AluSx SINE Alu -22 290 9 213 156 0 22 chr6 5793620 5793665 -183485889 + T-rich Low_complexity Low_complexity 6 49 0 438 276 184 6 chr6 5793739 5793913 -183485641 + MIR SINE MIR 29 233 -29 195 292 91 136 chr6 5794205 5794359 -183485195 - MER5A DNA MER1_type 0 189 43 323 253 0 0 chr6 5794955 5795030 -183484524 - L1ME3A LINE L1 -311 5859 5785 461 239 26 9 chr6 5795044 5795157 -183484397 - L1MA10 LINE L1 -2 6332 6218 663 252 47 51 chr6 5795220 5795474 -183484080 - L1ME3A LINE L1 -393 5777 5525 824 286 118 18 chr6 5795487 5795945 -183483609 - L1ME3A LINE L1 -1692 4454 3951 180 246 185 0 chr6 5796113 5796178 -183483376 - L2 LINE L2 0 3313 3237 844 304 101 7 chr6 5796411 5796849 -183482705 - L3 LINE CR1 -2 1575 1097 181 339 0 0 chr6 5797308 5797364 -183482190 + MIR SINE MIR 78 133 -129 1855 168 61 82 chr6 5798781 5799075 -183480479 - MLT1C LTR MaLR 0 467 183 2061 120 0 49 chr6 5799075 5799401 -183480153 - AluSg SINE Alu 0 310 1 1855 168 61 82 chr6 5799401 5799547 -183480007 - MLT1C LTR MaLR -284 183 36 234 318 64 0 chr6 5799720 5799830 -183479724 + L3b LINE CR1 1239 1355 -228 279 0 0 0 chr6 5800325 5800356 -183479198 + (CA)n Simple_repeat Simple_repeat 2 32 0 555 340 40 8 chr6 5800652 5801005 -183478549 - LTR16C LTR ERVL 0 491 128 725 152 0 0 chr6 5801249 5801348 -183478206 + FLAM_A SINE Alu 1 99 -43 1019 345 62 24 chr6 5801639 5802314 -183477240 - ERVL LTR ERVL -719 5045 4345 26 0 0 0 chr6 5802330 5802356 -183477198 + AT_rich Low_complexity Low_complexity 1 26 0 2235 303 66 40 chr6 5802362 5804559 -183474995 - ERVL LTR ERVL -1536 4228 1902 690 354 97 8 chr6 5804851 5805224 -183474330 - ERVL LTR ERVL -3531 1465 1060 2395 94 0 0 chr6 5805958 5806265 -183473289 + AluY SINE Alu 1 307 -4 250 234 73 40 chr6 5806524 5806648 -183472906 + L1ME LINE L1 40 167 -5903 347 234 0 13 chr6 5806886 5806963 -183472591 + L2 LINE L2 3229 3304 -9 409 227 62 31 chr6 5807217 5807345 -183472209 + MIR SINE MIR 65 196 -66 246 242 65 0 chr6 5807347 5807409 -183472145 - L2 LINE L2 -1 3312 3247 275 209 166 92 chr6 5807413 5807576 -183471978 - L2 LINE L2 0 3313 3139 1362 171 23 5 chr6 5807576 5807989 -183471565 + MLT2B2 LTR ERVL 1 515 0 597 292 50 7 chr6 5809630 5809907 -183469647 - L1ME4a LINE L1 -1 6120 5832 1077 291 93 39 chr6 5809935 5810737 -183468817 + L2 LINE L2 2461 3308 -5 386 244 123 40 chr6 5810738 5810933 -183468621 - L1M2 LINE L1 -334 5787 5596 43276 33 22 13 chr6 5810941 5816708 -183462846 - L1PA2 LINE L1 -2 6153 321 1461 18 0 0 chr6 5816708 5816873 -183462681 - AluYb8 SINE Alu 0 318 154 43276 33 22 13 chr6 5816873 5817195 -183462359 - L1PA2 LINE L1 -5834 321 4 631 284 89 4 chr6 5817808 5818044 -183461510 - MIR SINE MIR -3 259 4 1919 212 128 38 chr6 5818058 5818582 -183460972 - MLT1G LTR MaLR -6 584 14 543 128 0 64 chr6 5818586 5818680 -183460874 - L1MC1 LINE L1 -6 6327 6240 2245 94 17 7 chr6 5818690 5818989 -183460565 - AluSc SINE Alu 0 309 8 614 305 28 59 chr6 5820158 5820494 -183459060 + MLT1I LTR MaLR 64 390 -19 1079 261 5 0 chr6 5820494 5820712 -183458842 + MER58A DNA MER1_type 4 222 -2 614 305 28 59 chr6 5820712 5820732 -183458822 + MLT1I LTR MaLR 390 409 0 189 235 0 0 chr6 5820844 5820878 -183458676 - L2 LINE L2 -14 3258 3225 189 0 0 0 chr6 5821530 5821551 -183458003 + (T)n Simple_repeat Simple_repeat 1 21 0 528 16 0 0 chr6 5822184 5822245 -183457309 + (CA)n Simple_repeat Simple_repeat 2 62 0 216 0 0 0 chr6 5822244 5822268 -183457286 + (GA)n Simple_repeat Simple_repeat 2 25 0 * 428 191 57 77 chr6 5822541 5822724 -183456830 + MER58 DNA MER1_type 43 2419 -1 1992 268 77 70 chr6 5822746 5824900 -183454654 - HERV16 LTR ERVL -2762 2234 1 1312 253 93 23 chr6 5824907 5825303 -183454251 - LTR16A LTR ERVL -10 440 17 201 267 93 0 chr6 5825329 5825404 -183454150 + MIR SINE MIR 60 141 -67 260 236 112 22 chr6 5825413 5825502 -183454052 - L1ME4a LINE L1 -17 6104 6008 292 131 51 35 chr6 5825896 5825975 -183453579 + L1PB4 LINE L1 5684 5758 -396 205 228 25 0 chr6 5825985 5826064 -183453490 + (CA)n Simple_repeat Simple_repeat 1 81 0 2267 128 56 11 chr6 5826064 5826422 -183453132 + L1PB4 LINE L1 5783 6156 0 758 251 25 5 chr6 5826509 5826708 -183452846 - L1ME4a LINE L1 -393 5728 5526 2134 118 0 10 chr6 5827924 5828221 -183451333 - AluSq SINE Alu -19 294 1 180 77 0 0 chr6 5828312 5828338 -183451216 + (TATATG)n Simple_repeat Simple_repeat 3 28 0 279 122 0 0 chr6 5828434 5828483 -183451071 + (GA)n Simple_repeat Simple_repeat 2 50 0 605 298 164 3 chr6 5828790 5829119 -183450435 - Tigger8 DNA MER2_type -174 492 111 189 0 0 0 chr6 5829166 5829187 -183450367 + (TG)n Simple_repeat Simple_repeat 2 22 0 1204 202 68 46 chr6 5830495 5830983 -183448571 - MLT1F LTR MaLR 0 567 20 284 184 79 26 chr6 5831193 5831269 -183448285 + LTR50 LTR ERVL 716 795 0 328 298 0 11 chr6 5831345 5831439 -183448115 - MIR SINE MIR -121 141 49 2903 155 33 26 chr6 5831892 5832383 -183447171 + L1PA15 LINE L1 5670 6163 -2 358 348 123 40 chr6 5832819 5833046 -183446508 - MIR SINE MIR -1 261 16 393 291 10 0 chr6 5833497 5833600 -183445954 + MER5A DNA MER1_type 67 170 -19 562 271 66 17 chr6 5833661 5833842 -183445712 + MIR SINE MIR 34 223 -39 21 36 0 0 chr6 5834222 5834250 -183445304 + AT_rich Low_complexity Low_complexity 1 28 0 1158 291 49 51 chr6 5834734 5835163 -183444391 - L2 LINE L2 -66 3247 2832 2454 185 17 77 chr6 5835163 5835697 -183443857 - MLT1D LTR MaLR -1 504 3 1158 291 49 51 chr6 5835697 5836076 -183443478 - L2 LINE L2 -481 2832 2454 246 214 54 0 chr6 5836293 5836349 -183443205 - LTR50 LTR ERVL 0 795 737 323 231 100 23 chr6 5836349 5836479 -183443075 - L1MEc LINE L1 -4544 1852 1713 882 49 0 0 chr6 5836503 5836605 -183442949 - L1PA7 LINE L1 -3 6151 6050 372 261 22 0 chr6 5836607 5836699 -183442855 - L2 LINE L2 -644 2670 2577 32713 101 7 23 chr6 5836731 5843099 -183436455 - L1PA7 LINE L1 -108 6361 4 1074 255 50 61 chr6 5843104 5843326 -183436228 - L1MEc LINE L1 -4678 1718 1495 1627 174 44 7 chr6 5843326 5843624 -183435930 - 7SLRNA srpRNA srpRNA -9 311 3 1074 255 50 61 chr6 5843624 5843943 -183435611 - L1MEc LINE L1 -4901 1495 1183 355 220 28 37 chr6 5843958 5844067 -183435487 + LTR16B LTR ERVL 355 462 -2 1155 300 29 40 chr6 5844101 5844657 -183434897 - L1MEc LINE L1 -5637 759 210 1028 175 0 16 chr6 5844806 5845000 -183434554 + L1MB7 LINE L1 4976 5166 -980 2235 173 41 12 chr6 5845000 5845416 -183434138 + L1MB3 LINE L1 5749 6176 -7 4125 202 45 12 chr6 5845437 5846433 -183433121 + L1MB7 LINE L1 5149 6173 -11 280 222 127 16 chr6 5846472 5846535 -183433019 + L2 LINE L2 3204 3273 -40 21 0 0 0 chr6 5846625 5846646 -183432908 + AT_rich Low_complexity Low_complexity 1 21 0 572 285 80 10 chr6 5846821 5847021 -183432533 + MIR SINE MIR 48 261 -1 321 26 0 0 chr6 5847683 5847722 -183431832 + U5 snRNA snRNA 6 44 -72 196 298 0 0 chr6 5848395 5848442 -183431112 + MIR SINE MIR 215 261 -1 423 202 0 0 chr6 5848446 5848540 -183431014 + (CCA)n Simple_repeat Simple_repeat 1 94 0 436 346 39 43 chr6 5848713 5849146 -183430408 + L3 LINE CR1 358 866 -711 2494 167 55 4 chr6 5849229 5849685 -183429869 + L1MD1 LINE L1 5565 6043 -199 1525 213 66 26 chr6 5849685 5850032 -183429522 - MSTD LTR MaLR 0 396 36 1083 163 41 5 chr6 5850039 5850230 -183429324 + L1MD1 LINE L1 6039 6237 -1 198 0 0 0 chr6 5850230 5850252 -183429302 + (CA)n Simple_repeat Simple_repeat 1 22 0 837 325 45 3 chr6 5850274 5850560 -183428994 + L3 LINE CR1 976 1273 -304 2156 162 34 3 chr6 5851034 5851386 -183428168 - MLT1A1 LTR MaLR 0 365 3 1741 189 0 3 chr6 5852221 5852713 -183426841 - AluJo SINE Alu 0 312 1 530 289 0 7 chr6 5853010 5853145 -183426409 - MER94 DNA DNA 0 134 1 251 231 70 124 chr6 5853633 5853819 -183425735 + L2 LINE L2 3015 3190 -82 199 274 20 0 chr6 5854368 5854419 -183425135 - L2 LINE L2 -5 3267 3216 1318 234 80 27 chr6 5854556 5855060 -183424494 + MLT1E LTR MaLR 102 593 0 685 257 50 94 chr6 5855108 5855470 -183424084 + LTR16A LTR ERVL 105 450 0 222 310 0 14 chr6 5855670 5855741 -183423813 - MIR3 SINE MIR -27 181 112 310 299 0 0 chr6 5856188 5856275 -183423279 - MIR SINE MIR -26 236 150 1907 188 39 39 chr6 5857147 5857562 -183421992 - MLT1D LTR MaLR 0 505 91 870 250 94 58 chr6 5858361 5858721 -183420833 - MLT1J2 LTR MaLR 0 450 78 347 231 34 60 chr6 5859983 5860100 -183419454 + MIR SINE MIR 49 162 -100 925 313 63 11 chr6 5860496 5860969 -183418585 + L2 LINE L2 2014 2511 -803 238 275 165 0 chr6 5861405 5861514 -183418040 + HsTC2 DNA Tc2 1 127 -1771 2779 208 59 0 chr6 5861530 5862121 -183417433 + HsTC2 DNA Tc2 1273 1898 0 215 289 132 18 chr6 5862253 5862367 -183417187 + L2 LINE L2 3187 3313 0 65 74 0 0 chr6 5863830 5863965 -183415589 + AT_rich Low_complexity Low_complexity 1 135 0 489 272 43 19 chr6 5863987 5864149 -183415405 - MIR3 SINE MIR -9 199 34 357 278 75 100 chr6 5864292 5864379 -183415175 - Charlie8 DNA MER1_type -106 235 147 1747 160 3 39 chr6 5864379 5864685 -183414869 - AluJb SINE Alu 0 312 18 357 278 75 100 chr6 5864685 5864838 -183414716 - Charlie8 DNA MER1_type -194 147 1 2065 109 0 7 chr6 5864856 5865202 -183414352 + AluSg SINE Alu 1 344 0 635 246 78 47 chr6 5865929 5866161 -183413393 - Charlie8 DNA MER1_type -2177 240 2 356 311 20 27 chr6 5867467 5867615 -183411939 + L2 LINE L2 2343 2489 -825 442 214 127 8 chr6 5867732 5867858 -183411696 - MER103 DNA DNA -7 159 19 257 358 45 11 chr6 5868013 5868192 -183411362 + L2 LINE L2 2601 2785 -529 1024 238 135 67 chr6 5868329 5868855 -183410699 + L1MEc LINE L1 1297 1858 -4538 9817 109 8 0 chr6 5868948 5870223 -183409331 - HSMAR1 DNA Mariner 0 1287 3 1719 100 4 21 chr6 5871306 5871547 -183408007 + AluSc SINE Alu 63 299 -10 2294 136 87 0 chr6 5873502 5873893 -183405661 - MSTB1 LTR MaLR 0 432 8 435 344 60 5 chr6 5875435 5875650 -183403904 - Charlie8 DNA MER1_type -2136 281 55 309 305 181 41 chr6 5876981 5877446 -183402108 + L2 LINE L2 2446 2975 -339 302 279 52 19 chr6 5878860 5879014 -183400540 + L1MC4a LINE L1 5768 5926 -1882 282 298 25 19 chr6 5879193 5879351 -183400203 + L1MC4a LINE L1 5768 5926 -1882 2201 116 0 0 chr6 5881218 5881521 -183398033 + AluY SINE Alu 1 303 -8 1211 157 101 28 chr6 5882318 5882566 -183396988 + L1MD3 LINE L1 7730 7995 0 183 235 20 0 chr6 5882858 5882909 -183396645 + L2 LINE L2 3220 3271 -1 727 110 20 0 chr6 5883623 5883723 -183395831 + AluSg/x SINE Alu 203 304 -5 190 311 33 82 chr6 5884124 5884246 -183395308 + MIR SINE MIR 30 145 -63 284 314 137 10 chr6 5884304 5884406 -183395148 + MIR SINE MIR 30 144 -64 283 283 43 0 chr6 5885951 5886043 -183393511 - MIR SINE MIR -13 249 154 467 57 71 0 chr6 5886044 5886114 -183393440 - AluSp/q SINE Alu -12 301 227 246 61 0 0 chr6 5886114 5886147 -183393407 - Alu SINE Alu -269 33 1 314 352 110 0 chr6 5886149 5886294 -183393260 - MIR SINE MIR -100 162 2 391 285 86 56 chr6 5887484 5887821 -183391733 - MLT1I LTR MaLR 0 409 63 213 154 0 0 chr6 5889505 5889544 -183390010 + (TA)n Simple_repeat Simple_repeat 1 39 0 218 208 21 0 chr6 5889647 5889695 -183389859 - L2 LINE L2 0 3313 3265 2370 85 0 16 chr6 5890061 5890377 -183389177 - AluY SINE Alu 0 311 1 309 229 16 41 chr6 5891001 5891129 -183388425 - MIR SINE MIR -18 190 67 2129 115 3 3 chr6 5891130 5891416 -183388138 + AluSx SINE Alu 1 286 -26 328 116 261 0 chr6 5891437 5891506 -183388048 + L1PA14 LINE L1 6075 6161 0 23 33 0 0 chr6 5892066 5892096 -183387458 + AT_rich Low_complexity Low_complexity 1 30 0 423 271 57 36 chr6 5892409 5892549 -183387005 + MIR SINE MIR 2 144 -118 1417 13 0 7 chr6 5893089 5893244 -183386310 + L1PA6 LINE L1 5995 6148 -6 789 189 24 18 chr6 5893363 5893532 -183386022 + MER5B DNA MER1_type 7 176 -2 426 278 23 79 chr6 5894082 5894272 -183385282 - MIR SINE MIR -60 148 11 1227 206 39 123 chr6 5894576 5895063 -183384491 + L1MC5 LINE L1 6692 7122 -839 2217 85 3 10 chr6 5895063 5895368 -183384186 + AluSp SINE Alu 1 303 -10 1227 206 39 123 chr6 5895368 5895476 -183384078 + L1MC5 LINE L1 7122 7237 -724 277 219 55 0 chr6 5895623 5895696 -183383858 + L1MC5 LINE L1 7311 7387 -574 25 0 0 0 chr6 5895948 5895973 -183383581 + AT_rich Low_complexity Low_complexity 1 25 0 538 288 100 4 chr6 5896274 5896503 -183383051 + L2 LINE L2 1452 1702 -1612 659 184 14 35 chr6 5896512 5896653 -183382901 + L1PA16 LINE L1 6027 6164 -2 468 218 29 24 chr6 5896931 5897101 -183382453 + L1 LINE L1 3128 3298 -2848 745 231 13 70 chr6 5899412 5899636 -183379918 + L1 LINE L1 3289 3493 -2653 875 165 0 0 chr6 5899636 5899769 -183379785 + FLAM_A SINE Alu 1 133 0 745 231 13 70 chr6 5899769 5899842 -183379712 + L1 LINE L1 3493 3569 -2577 2853 128 5 25 chr6 5900067 5900139 -183379415 + MER83 LTR ERV1 1 73 -375 2070 100 0 77 chr6 5900139 5900478 -183379076 + AluSq SINE Alu 1 313 0 2853 128 5 25 chr6 5900478 5900844 -183378710 + MER83 LTR ERV1 73 430 -18 353 364 102 62 chr6 5900897 5901172 -183378382 + L2 LINE L2 2985 3270 -2 2004 95 0 7 chr6 5901986 5902313 -183377241 + AluSc SINE Alu 1 325 0 1767 242 122 33 chr6 5902394 5902930 -183376624 - MLT1E2 LTR MaLR 0 626 34 2154 102 10 0 chr6 5902930 5903225 -183376329 + AluSg SINE Alu 1 298 -12 1767 242 122 33 chr6 5903225 5903263 -183376291 - MLT1E2 LTR MaLR -592 34 1 317 313 68 68 chr6 5904110 5904273 -183375281 + L1ME4a LINE L1 5827 5989 -132 398 228 0 22 chr6 5904882 5904974 -183374580 + FLAM_A SINE Alu 44 133 0 278 242 63 90 chr6 5905122 5905345 -183374209 - HAL1 LINE L1 -1153 1354 1138 1325 175 10 31 chr6 5905378 5905685 -183373869 + MLT1A1 LTR MaLR 1 373 -1 290 303 49 25 chr6 5905689 5905811 -183373743 - LTR16C LTR ERVL -158 333 209 21 36 0 0 chr6 5905900 5905928 -183373626 + AT_rich Low_complexity Low_complexity 1 28 0 556 183 48 48 chr6 5906070 5906196 -183373358 + L1MC4 LINE L1 7599 7724 -318 345 203 0 0 chr6 5907031 5907090 -183372464 - L2 LINE L2 0 3313 3255 1789 158 10 0 chr6 5907296 5907587 -183371967 + AluJo SINE Alu 1 294 -18 1143 194 19 0 chr6 5907680 5907891 -183371663 - MER20 DNA MER1_type -4 215 1 1884 141 7 0 chr6 5908446 5908736 -183370818 + AluSp SINE Alu 1 292 -21 364 281 71 52 chr6 5909034 5909244 -183370310 - L2 LINE L2 -228 3085 2872 615 278 139 4 chr6 5911061 5911291 -183368263 + MIR SINE MIR 2 262 0 495 231 62 36 chr6 5911561 5911759 -183367795 + LTR33A LTR ERVL 26 175 -348 1688 161 3 16 chr6 5912043 5912354 -183367200 + AluJo SINE Alu 1 307 -5 2571 219 15 9 chr6 5912448 5912983 -183366571 - MLT1F LTR MaLR -2 540 3 395 340 36 69 chr6 5913557 5914104 -183365450 - L2 LINE L2 -38 3234 2705 224 254 0 48 chr6 5914436 5914499 -183365055 - MIR SINE MIR -8 254 195 192 125 0 0 chr6 5914720 5914752 -183364802 + (TG)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr6 5916195 5916219 -183363335 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1590 207 63 67 chr6 5916426 5916933 -183362621 - MLT1D LTR MaLR 0 505 1 610 279 56 23 chr6 5917030 5917245 -183362309 + MIR SINE MIR 39 260 -2 447 336 27 55 chr6 5917938 5918194 -183361360 + L1MC/D LINE L1 5511 5759 -2049 616 207 166 24 chr6 5918922 5919091 -183360463 - MIR SINE MIR -50 212 20 22 0 0 0 chr6 5922015 5922037 -183357517 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr6 5922841 5922871 -183356683 + AT_rich Low_complexity Low_complexity 1 30 0 32 0 0 0 chr6 5923443 5923475 -183356079 + AT_rich Low_complexity Low_complexity 1 32 0 319 289 11 56 chr6 5924454 5924634 -183354920 + CT-rich Low_complexity Low_complexity 5 176 0 186 200 0 0 chr6 5925320 5925355 -183354199 + L2 LINE L2 3150 3184 -88 234 0 0 0 chr6 5925504 5925530 -183354024 + (T)n Simple_repeat Simple_repeat 1 26 0 219 322 0 41 chr6 5927537 5927658 -183351896 + CT-rich Low_complexity Low_complexity 1 116 0 183 194 28 0 chr6 5927844 5927880 -183351674 + L2 LINE L2 3276 3312 -1 189 0 0 0 chr6 5928369 5928390 -183351164 + (GGA)n Simple_repeat Simple_repeat 1 21 0 440 117 13 0 chr6 5931662 5931739 -183347815 + (GA)n Simple_repeat Simple_repeat 2 79 0 288 0 0 0 chr6 5932348 5932380 -183347174 + (CA)n Simple_repeat Simple_repeat 1 32 0 239 238 38 0 chr6 5932382 5932462 -183347092 + (CG)n Simple_repeat Simple_repeat 1 83 0 230 203 0 14 chr6 5932757 5932826 -183346728 + (CA)n Simple_repeat Simple_repeat 2 69 0 25 0 0 0 chr6 5934058 5934083 -183345471 + GC_rich Low_complexity Low_complexity 1 25 0 197 275 0 58 chr6 5934581 5934650 -183344904 + MIR3 SINE MIR 133 197 -11 2026 96 48 0 chr6 5935512 5935804 -183343750 + AluSq SINE Alu 1 306 -7 1192 241 68 51 chr6 5936041 5936451 -183343103 + L1MC4 LINE L1 7624 8040 -2 350 280 206 41 chr6 5936462 5936680 -183342874 + L1M4 LINE L1 4980 5233 -913 378 0 0 0 chr6 5936718 5936760 -183342794 + (CA)n Simple_repeat Simple_repeat 2 43 0 2154 271 101 24 chr6 5936838 5937717 -183341837 - L1MC4 LINE L1 -459 7583 6637 691 292 111 48 chr6 5937996 5938473 -183341081 - L1MEc LINE L1 -3445 3095 2649 1918 158 3 0 chr6 5938473 5938777 -183340777 + AluSx SINE Alu 1 305 -7 691 292 111 48 chr6 5938777 5939331 -183340223 - L1MEc LINE L1 -3891 2649 2025 571 307 112 68 chr6 5939333 5939618 -183339936 - L1MEc LINE L1 -4604 1936 1626 959 164 31 0 chr6 5939618 5939777 -183339777 - FRAM SINE Alu -2 164 1 571 307 112 68 chr6 5939777 5939901 -183339653 - L1MEc LINE L1 -4914 1626 1509 5879 146 28 9 chr6 5939931 5940434 -183339120 - L1MA9 LINE L1 0 6312 5820 285 89 0 0 chr6 5940434 5940479 -183339075 + (CA)n Simple_repeat Simple_repeat 1 45 0 5879 146 28 9 chr6 5940479 5941601 -183337953 - L1MA9 LINE L1 -492 5820 4655 7094 158 92 68 chr6 5941813 5942277 -183337277 - L1MC3 LINE L1 0 7785 7334 1256 190 99 74 chr6 5942277 5942640 -183336914 + MLT1A2 LTR MaLR 1 372 -2 7094 158 92 68 chr6 5942640 5942735 -183336819 - L1MC3 LINE L1 -451 7334 7243 272 250 0 25 chr6 5942735 5942815 -183336739 - MLT1F1 LTR MaLR -442 125 48 7094 158 92 68 chr6 5942815 5943834 -183335720 - L1MC3 LINE L1 -542 7243 6087 1475 162 38 22 chr6 5943958 5944272 -183335282 - MER33 DNA MER1_type 0 324 6 330 26 0 0 chr6 5945098 5945137 -183334417 + (TG)n Simple_repeat Simple_repeat 2 40 0 285 268 33 72 chr6 5945537 5945690 -183333864 + MIR SINE MIR 34 180 -82 2130 173 36 51 chr6 5946595 5947069 -183332485 + MLT1C LTR MaLR 1 467 0 341 100 0 17 chr6 5947675 5947735 -183331819 + (TTCC)n Simple_repeat Simple_repeat 2 60 0 947 87 16 33 chr6 5947737 5947920 -183331634 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 594 75 0 0 chr6 5947925 5948005 -183331549 + (TTCC)n Simple_repeat Simple_repeat 2 81 0 1202 182 82 82 chr6 5948007 5948287 -183331267 - AluJo SINE Alu -32 280 1 1919 164 0 0 chr6 5948313 5948606 -183330948 - AluJb SINE Alu -19 293 1 182 194 21 161 chr6 5948913 5949006 -183330548 + MIR3 SINE MIR 122 201 -7 223 340 28 38 chr6 5949146 5949252 -183330302 - L2 LINE L2 -57 3215 3111 2039 171 89 39 chr6 5949342 5949782 -183329772 - MLT1C LTR MaLR 0 467 6 627 224 26 13 chr6 5950738 5950894 -183328660 + Charlie8 DNA MER1_type 102 259 -2158 198 103 0 0 chr6 5952354 5952383 -183327171 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 2807 77 66 16 chr6 5952591 5953018 -183326536 - LTR7 LTR ERV1 -2 448 1 2676 66 45 13 chr6 5953018 5953398 -183326156 - HERVH LTR ERV1 0 7713 7322 1426 115 23 9 chr6 5953396 5953613 -183325941 - HERVH LTR ERV1 -1894 5819 5600 * 4229 153 12 1 chr6 5953614 5954269 -183325285 - HERVH LTR ERV1 -2564 5149 4488 3479 105 10 2 chr6 5954267 5954771 -183324783 - HERVH LTR ERV1 -3714 3999 3492 * 888 143 27 0 chr6 5954761 5954908 -183324646 - HERVH LTR ERV1 -4423 3290 3140 * 17037 101 36 25 chr6 5954878 5957966 -183321588 - HERVH LTR ERV1 -4709 3004 1 2724 89 60 17 chr6 5957968 5958382 -183321172 - LTR7 LTR ERV1 -2 448 17 583 256 0 0 chr6 5959484 5959601 -183319953 - MER94 DNA DNA -2 132 16 773 180 6 0 chr6 5960711 5960878 -183318676 + (CAT)n Simple_repeat Simple_repeat 1 168 0 3441 67 2 7 chr6 5960880 5961330 -183318224 - LTR7 LTR ERV1 -2 448 1 213 94 0 0 chr6 5961331 5961363 -183318191 + (CAT)n Simple_repeat Simple_repeat 3 34 0 510 316 59 30 chr6 5961481 5961785 -183317769 + L3 LINE CR1 1251 1563 -14 1228 146 68 5 chr6 5961863 5962069 -183317485 + MER20 DNA MER1_type 1 219 0 12274 34 0 0 chr6 5962286 5964488 -183315066 - L1PA4 LINE L1 0 6155 3951 574 246 8 0 chr6 5964738 5964868 -183314686 - MER94 DNA DNA 0 134 4 374 279 147 35 chr6 5966066 5966305 -183313249 + MIR SINE MIR 2 255 -7 223 359 92 0 chr6 5966348 5966490 -183313064 + L2 LINE L2 3117 3271 -1 655 176 27 148 chr6 5966693 5966949 -183312605 + LTR16A1 LTR ERVL 1 225 -232 804 128 0 0 chr6 6017053 6017178 -183262376 + L1PA13 LINE L1 6039 6163 0 4580 243 51 35 chr6 6017205 6017901 -183261653 + L1M4 LINE L1 3181 3864 -2282 2140 111 3 0 chr6 6017901 6018199 -183261355 + AluSp SINE Alu 1 299 -14 4580 243 51 35 chr6 6018199 6018336 -183261218 + L1M4 LINE L1 3864 3997 -2149 2353 84 3 0 chr6 6018336 6018645 -183260909 + AluY SINE Alu 1 310 -1 4580 243 51 35 chr6 6018645 6019663 -183259891 + L1M4 LINE L1 3997 5063 -1083 249 275 0 0 chr6 6019698 6019789 -183259765 + L1MC4 LINE L1 6614 6704 -1338 765 166 0 0 chr6 6019911 6020056 -183259498 - AluY SINE Alu 0 311 167 261 267 23 23 chr6 6020647 6020733 -183258821 + MIR SINE MIR 55 140 -68 1481 262 173 6 chr6 6020804 6021527 -183258027 + L2 LINE L2 2461 3312 -1 329 229 64 9 chr6 6021524 6021633 -183257921 - MIR SINE MIR -85 177 63 * 2241 105 0 3 chr6 6021828 6022123 -183257431 - AluSx SINE Alu -18 294 1 2236 95 0 0 chr6 6022778 6023063 -183256491 - AluSx SINE Alu -6 306 22 253 250 0 0 chr6 6023386 6023470 -183256084 - L1MC4 LINE L1 -1339 6703 6620 1243 68 0 0 chr6 6023593 6023755 -183255799 - AluY SINE Alu 0 311 150 334 130 0 29 chr6 6023764 6023833 -183255721 + (TA)n Simple_repeat Simple_repeat 2 68 0 1449 185 46 60 chr6 6023833 6024287 -183255267 + L1ME2 LINE L1 5603 6050 -114 1197 282 153 7 chr6 6025072 6025677 -183253877 - L2 LINE L2 -6 3307 2612 4221 179 38 5 chr6 6027229 6028026 -183251528 - MER54A LTR ERVL -4 897 75 460 191 17 9 chr6 6028638 6028753 -183250801 - Charlie5 DNA MER1_type 0 2624 2509 * 1357 212 104 51 chr6 6028752 6029205 -183250349 - MLT1D LTR MaLR -28 477 1 774 159 6 38 chr6 6029206 6029388 -183250166 - MER33 DNA MER1_type -262 62 1 672 195 94 25 chr6 6029390 6029549 -183250005 + MER5B DNA MER1_type 5 174 -4 246 136 0 0 chr6 6029607 6029651 -183249903 + (TC)n Simple_repeat Simple_repeat 1 44 0 225 0 0 0 chr6 6029725 6029750 -183249804 + (TG)n Simple_repeat Simple_repeat 2 26 0 202 346 0 0 chr6 6029850 6029902 -183249652 - L2 LINE L2 -6 3266 3215 200 189 0 0 chr6 6030004 6030041 -183249513 + (CA)n Simple_repeat Simple_repeat 2 38 0 2035 179 16 40 chr6 6030941 6031365 -183248189 - MLT2D LTR ERVL 0 414 1 209 182 45 154 chr6 6031367 6031477 -183248077 + L2 LINE L2 3155 3252 -20 218 261 72 43 chr6 6032459 6032528 -183247026 + L2 LINE L2 3202 3272 0 614 233 126 6 chr6 6032598 6032757 -183246797 + MER5A DNA MER1_type 12 189 0 2750 125 28 0 chr6 6032889 6033320 -183246234 - L1PB3 LINE L1 -1 6153 5711 329 269 0 0 chr6 6034500 6034567 -183244987 + MER5A DNA MER1_type 9 75 -114 599 107 0 0 chr6 6034570 6034654 -183244900 + AluS SINE Alu 1 84 -229 182 208 21 0 chr6 6036260 6036308 -183243246 + GA-rich Low_complexity Low_complexity 4 52 0 466 266 31 44 chr6 6036909 6037091 -183242463 + MER5A DNA MER1_type 3 178 0 236 275 0 0 chr6 6039740 6039809 -183239745 - MER113 DNA MER1_type? -118 403 335 234 371 19 0 chr6 6039889 6039994 -183239560 + L2 LINE L2 2903 3009 -263 466 256 80 23 chr6 6040366 6040628 -183238926 - L1MC5 LINE L1 -48 7913 7637 22 56 0 0 chr6 6040628 6040664 -183238890 + AT_rich Low_complexity Low_complexity 1 36 0 5683 96 11 13 chr6 6040742 6041292 -183238262 - L1PB1 LINE L1 0 6151 5602 2271 83 3 23 chr6 6041292 6041593 -183237961 - AluSc SINE Alu -14 295 1 5683 96 11 13 chr6 6041593 6041937 -183237617 - L1PB1 LINE L1 -549 5602 5259 973 267 80 60 chr6 6042102 6042156 -183237398 - L1MEd LINE L1 -4868 1251 1200 2421 87 0 0 chr6 6042156 6042456 -183237098 - AluY SINE Alu -11 300 1 973 267 80 60 chr6 6042456 6043408 -183236146 - L1MEd LINE L1 -4919 1200 323 225 226 97 11 chr6 6043554 6043647 -183235907 - L1MEd LINE L1 -5941 178 78 435 288 161 15 chr6 6043691 6043965 -183235589 + L1MC4a LINE L1 5575 5888 -1920 24 0 0 0 chr6 6043997 6044021 -183235533 + AT_rich Low_complexity Low_complexity 1 24 0 2844 126 11 7 chr6 6044385 6044830 -183234724 - L1PA11 LINE L1 -1 6173 5727 603 59 24 0 chr6 6045621 6045706 -183233848 - L1PA6 LINE L1 -2 6152 6066 17375 93 7 4 chr6 6045706 6048181 -183231373 - HERVK9 LTR ERVK -1810 4106 1625 4235 103 12 21 chr6 6048182 6048849 -183230705 - HERVK9 LTR ERVK -5255 661 1 2975 118 51 8 chr6 6048849 6049339 -183230215 - MER9 LTR ERVK 0 511 1 2839 3 0 16 chr6 6049375 6049691 -183229863 - AluYa5 SINE Alu 0 311 1 21315 126 13 18 chr6 6049691 6050220 -183229334 - L1P LINE L1 -2530 3616 3086 2290 113 0 6 chr6 6050220 6050531 -183229023 - AluY SINE Alu -2 309 1 21315 126 13 18 chr6 6050531 6053623 -183225931 - L1P LINE L1 -3060 3086 11 1516 169 66 0 chr6 6053842 6054115 -183225439 - AluY SINE Alu -20 291 1 324 242 78 13 chr6 6054552 6054705 -183224849 + L1ME LINE L1 5508 5670 -451 1442 247 53 40 chr6 6054750 6055280 -183224274 - MER74A LTR ERVL 0 558 22 689 190 27 2 chr6 6055283 6055454 -183224100 - L1MA4 LINE L1 -190 6114 5942 818 159 14 7 chr6 6055550 6055695 -183223859 + MER47A DNA MER2_type 5 150 -216 470 265 67 76 chr6 6055696 6056075 -183223479 + L1MEc LINE L1 2167 2499 -3716 874 297 73 38 chr6 6056105 6057413 -183222141 + L1MEc LINE L1 2714 4068 -2147 8549 145 11 6 chr6 6057429 6060073 -183219481 + L1MA2 LINE L1 3652 6304 0 33 0 0 0 chr6 6060076 6060109 -183219445 + AT_rich Low_complexity Low_complexity 1 33 0 328 343 41 0 chr6 6060271 6060516 -183219038 + L1MEc LINE L1 4864 5118 -1097 227 264 35 11 chr6 6060861 6060948 -183218606 - MLT1K LTR MaLR -15 573 485 675 214 7 89 chr6 6060974 6061194 -183218360 - MIR SINE MIR -35 227 33 234 0 0 0 chr6 6061270 6061296 -183218258 + (CA)n Simple_repeat Simple_repeat 2 27 0 385 335 76 57 chr6 6061443 6062023 -183217531 - L2 LINE L2 -396 2918 2328 644 246 214 23 chr6 6062036 6062423 -183217131 - LTR67 LTR ERVL 0 557 97 1510 164 15 107 chr6 6063412 6063814 -183215740 - MLT1A1 LTR MaLR 0 365 1 1769 215 11 5 chr6 6064614 6064982 -183214572 + MLT1A2 LTR MaLR 1 370 -4 16892 192 17 13 chr6 6065435 6066684 -183212870 - L1PA12 LINE L1 -298 7308 6065 2046 133 3 0 chr6 6066684 6066977 -183212577 + AluSx SINE Alu 1 294 -18 16892 192 17 13 chr6 6066977 6067132 -183212422 - L1PA12 LINE L1 -1541 6065 5912 306 0 0 0 chr6 6067132 6067166 -183212388 + (TTA)n Simple_repeat Simple_repeat 3 36 0 13518 28 0 0 chr6 6067166 6069518 -183210036 - L1PA4 LINE L1 -18 6137 3784 16892 192 17 13 chr6 6069518 6071805 -183207749 - L1PA12 LINE L1 -1694 5912 3585 2119 139 0 0 chr6 6071805 6072106 -183207448 - AluSx SINE Alu -11 301 1 16892 192 17 13 chr6 6072106 6073263 -183206291 - L1PA12 LINE L1 -4021 3585 2434 1126 198 0 25 chr6 6073344 6073581 -183205973 - L1PA12 LINE L1 -7350 231 1 6040 145 31 0 chr6 6073699 6075094 -183204460 - L1MA1 LINE L1 0 7721 6275 * 18956 168 38 36 chr6 6075093 6079877 -183199677 - L1MA1 LINE L1 -2691 4874 93 198 0 0 0 chr6 6079877 6079899 -183199655 + (TG)n Simple_repeat Simple_repeat 2 23 0 18956 168 38 36 chr6 6079899 6079979 -183199575 - L1MA1 LINE L1 -7472 93 15 339 125 0 0 chr6 6080022 6080078 -183199476 - MADE1 DNA Mariner -24 56 1 2151 243 46 35 chr6 6080083 6080768 -183198786 - L1MEc LINE L1 -3148 3067 2404 2224 132 0 0 chr6 6080768 6081078 -183198476 - AluSq SINE Alu -3 310 1 2151 243 46 35 chr6 6081078 6081297 -183198257 - L1MEc LINE L1 -3811 2404 2189 697 244 94 23 chr6 6081345 6081644 -183197910 - L1MEc LINE L1 -4356 2040 1721 21573 127 18 10 chr6 6081677 6086133 -183193421 - L1PA7 LINE L1 0 6154 1665 21 36 0 0 chr6 6086460 6086488 -183193066 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 7 chr6 6086579 6086881 -183192673 - AluSc SINE Alu -7 302 1 710 245 116 45 chr6 6086962 6087367 -183192187 - L1MC4 LINE L1 0 8042 7524 2055 174 133 4 chr6 6087388 6087860 -183191694 - L1MA4A LINE L1 -25 6278 5746 738 294 52 55 chr6 6087865 6088229 -183191325 - L1M2 LINE L1 -5874 975 613 251 360 11 0 chr6 6088332 6088421 -183191133 - L1M2 LINE L1 -6072 777 688 1832 188 35 0 chr6 6088421 6088767 -183190787 + MSTB LTR MaLR 1 358 -68 240 161 16 16 chr6 6088816 6088878 -183190676 + MSTB LTR MaLR 365 426 -2 274 136 0 51 chr6 6088880 6088939 -183190615 + MSTB-int LTR MaLR 1 56 -1595 6236 190 50 64 chr6 6088939 6090624 -183188930 + MER52A LTR ERV1 1 1754 -1 7379 172 70 18 chr6 6090626 6092145 -183187409 + MSTB-int LTR MaLR 54 1651 0 1715 184 7 0 chr6 6092145 6092450 -183187104 + MSTB LTR MaLR 1 307 -119 1503 201 14 3 chr6 6092449 6092737 -183186817 + MSTB LTR MaLR 136 426 0 * 1964 253 13 0 chr6 6092850 6093324 -183186230 - L1M2 LINE L1 -6368 481 2 2421 241 71 53 chr6 6093327 6094267 -183185287 - L1MC4a LINE L1 -348 7460 6504 2708 263 138 30 chr6 6094876 6095966 -183183588 - MER69 DNA AcHobo -1316 1210 4 6490 118 28 10 chr6 6096855 6098078 -183181476 - L1MA3 LINE L1 0 6305 5062 731 194 8 0 chr6 6098167 6098296 -183181258 - FLAM_A SINE Alu -3 130 1 244 297 54 47 chr6 6100164 6100312 -183179242 - L3 LINE CR1 -5 1572 1424 1758 267 75 24 chr6 6101694 6102244 -183177310 + MLT1E LTR MaLR 16 593 0 2141 139 0 0 chr6 6102258 6102559 -183176995 - AluSx SINE Alu -11 301 1 944 190 36 107 chr6 6102585 6102922 -183176632 - L1ME3A LINE L1 -101 6069 5757 643 214 53 0 chr6 6102926 6103057 -183176497 - L1ME3A LINE L1 -507 5663 5526 194 301 0 14 chr6 6104898 6104971 -183174583 + L3 LINE CR1 1142 1213 -364 2024 253 43 15 chr6 6105160 6105216 -183174338 - MLT1H1 LTR MaLR -1 554 501 994 153 84 11 chr6 6105216 6105406 -183174148 + L1MA4A LINE L1 6100 6303 0 2024 253 43 15 chr6 6105406 6105887 -183173667 - MLT1H1 LTR MaLR -54 501 2 218 293 0 32 chr6 6107293 6107416 -183172138 + (TGGA)n Simple_repeat Simple_repeat 3 121 0 544 13 53 0 chr6 6107828 6107903 -183171651 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 268 278 41 0 chr6 6108261 6108358 -183171196 - L1MC4 LINE L1 0 8042 7942 16220 29 3 1 chr6 6108368 6111032 -183168522 - L1PA3 LINE L1 -2 6153 3486 333 220 264 0 chr6 6111040 6111131 -183168423 + MER117 DNA MER1_type 41 155 -42 348 287 20 34 chr6 6114060 6114221 -183165333 - MIR3 SINE MIR -87 175 15 3164 83 32 17 chr6 6114280 6114747 -183164807 + L1PB1 LINE L1 5678 6151 0 2724 156 4 28 chr6 6116290 6116797 -183162757 + L1MA6 LINE L1 5801 6295 -5 1764 208 11 19 chr6 6116821 6117196 -183162358 + MLT1A2 LTR MaLR 1 372 -2 638 298 146 22 chr6 6118225 6118594 -183160960 + L3 LINE CR1 1072 1486 -91 191 286 0 0 chr6 6118810 6118852 -183160702 + L2 LINE L2 3255 3296 -17 591 295 16 21 chr6 6118877 6119067 -183160487 + MIR SINE MIR 3 191 -71 271 303 50 0 chr6 6120023 6120122 -183159432 + MIR SINE MIR 41 144 -118 577 102 11 0 chr6 6120779 6120867 -183158687 + L1MA5 LINE L1 6206 6294 -6 209 386 16 16 chr6 6121346 6121473 -183158081 - MIR3 SINE MIR -44 164 38 1030 216 9 5 chr6 6121827 6122045 -183157509 - MER20 DNA MER1_type 0 219 1 272 253 62 88 chr6 6124133 6124327 -183155227 + MER3 DNA MER1_type 21 209 0 * 1059 183 0 11 chr6 6124327 6124362 -183155192 - MER3 DNA MER1_type -164 45 13 753 220 30 0 chr6 6124363 6124531 -183155023 - MIR SINE MIR -68 194 22 368 274 61 76 chr6 6124576 6124839 -183154715 - MIR SINE MIR -3 259 1 223 218 64 0 chr6 6125721 6125804 -183153750 + MIR SINE MIR 37 130 -78 2520 75 0 0 chr6 6126331 6126636 -183152918 - AluY SINE Alu -4 307 3 306 284 85 43 chr6 6126932 6127073 -183152481 - MER91A DNA MER1_type -30 166 20 2222 88 0 0 chr6 6127432 6127705 -183151849 + AluSx SINE Alu 1 273 -39 456 346 21 5 chr6 6128251 6128439 -183151115 - MIR SINE MIR -67 195 5 299 340 74 28 chr6 6128371 6128586 -183150968 + MIR SINE MIR 17 241 -21 * 4927 105 42 16 chr6 6128875 6129618 -183149936 - L1PA13 LINE L1 -6 6157 5396 660 84 176 8 chr6 6129618 6129737 -183149817 + L1PA13 LINE L1 5254 5392 -776 2137 103 0 3 chr6 6129744 6130046 -183149508 + L1PA14 LINE L1 5858 6158 -3 189 0 0 0 chr6 6130051 6130072 -183149482 + (GGAA)n Simple_repeat Simple_repeat 3 23 0 413 203 17 34 chr6 6130232 6130409 -183149145 + CT-rich Low_complexity Low_complexity 5 178 0 736 256 39 17 chr6 6131623 6131857 -183147697 + MIR SINE MIR 15 253 -9 830 221 17 43 chr6 6132367 6132598 -183146956 + L1ME3 LINE L1 5937 6161 -1 180 0 0 0 chr6 6132870 6132890 -183146664 + (T)n Simple_repeat Simple_repeat 1 20 0 183 184 0 0 chr6 6132906 6132944 -183146610 + (CA)n Simple_repeat Simple_repeat 1 38 0 628 195 53 35 chr6 6134576 6134745 -183144809 + MER5B DNA MER1_type 6 177 -1 367 263 219 0 chr6 6134842 6134979 -183144575 + MER5A DNA MER1_type 16 182 -7 362 233 14 0 chr6 6135055 6135128 -183144426 - MER81 DNA DNA -40 74 1 1190 167 28 19 chr6 6135132 6135348 -183144206 + MER20B DNA MER1_type 2 219 0 2122 124 0 0 chr6 6136151 6136441 -183143113 + AluSx SINE Alu 19 308 -4 182 312 56 32 chr6 6137014 6137139 -183142415 - MIR SINE MIR -91 171 44 359 212 34 51 chr6 6137616 6137734 -183141820 - MER103 DNA DNA -47 119 4 442 267 0 0 chr6 6138315 6138431 -183141123 - MIR SINE MIR -10 252 137 325 277 75 0 chr6 6139436 6139530 -183140024 + L2 LINE L2 3178 3278 -35 243 231 0 0 chr6 6140294 6140346 -183139208 - MIR SINE MIR -10 252 201 289 380 72 0 chr6 6140753 6141172 -183138382 - L2 LINE L2 -1230 2084 1636 180 310 79 49 chr6 6142153 6142356 -183137198 + L2 LINE L2 2897 3105 -167 183 313 54 9 chr6 6143131 6143243 -183136311 + L2 LINE L2 2899 3015 -257 547 259 109 85 chr6 6144498 6144915 -183134639 + MLT1L LTR MaLR 110 611 -4 410 306 14 7 chr6 6145236 6145380 -183134174 + MIR SINE MIR 108 252 -10 206 229 0 21 chr6 6145498 6145546 -183134008 - MER5B DNA MER1_type -19 159 113 314 330 96 20 chr6 6146116 6146313 -183133241 - MIR SINE MIR -4 258 47 213 244 58 47 chr6 6146973 6147059 -183132495 + MER5B DNA MER1_type 2 88 -90 198 195 49 0 chr6 6147112 6147153 -183132401 + MIR SINE MIR 72 114 -148 43281 38 22 7 chr6 6147154 6153280 -183126274 - L1PA3 LINE L1 0 6172 1 462 315 89 52 chr6 6153872 6154551 -183125003 - L2 LINE L2 -92 3180 2446 202 205 0 0 chr6 6154826 6154865 -183124689 + (TG)n Simple_repeat Simple_repeat 1 39 0 503 328 51 0 chr6 6156834 6157011 -183122543 + MIR SINE MIR 5 190 -72 2210 123 0 0 chr6 6159426 6159719 -183119835 + AluSc SINE Alu 1 293 -16 251 368 46 33 chr6 6160582 6160734 -183118820 - L2 LINE L2 -1 3271 3118 331 198 74 0 chr6 6160742 6160823 -183118731 + MIR SINE MIR 164 250 -12 487 246 50 40 chr6 6161132 6161236 -183118318 - MIR SINE MIR -5 257 156 2544 46 0 13 chr6 6161236 6161539 -183118015 + AluY SINE Alu 1 299 -12 487 246 50 40 chr6 6161539 6161647 -183117907 - MIR SINE MIR -106 156 50 1758 159 57 0 chr6 6162313 6162596 -183116958 + AluJb SINE Alu 1 299 -13 216 0 0 0 chr6 6163732 6163756 -183115798 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 671 121 30 0 chr6 6163759 6163858 -183115696 - FLAM_C SINE Alu -27 116 15 920 169 31 73 chr6 6163972 6164233 -183115321 - L1MA7 LINE L1 0 6291 6042 272 301 21 11 chr6 6164401 6164494 -183115060 + L2 LINE L2 3175 3268 -4 1246 222 45 24 chr6 6165241 6165811 -183113743 + MLT1E1 LTR MaLR 9 645 -9 192 40 0 0 chr6 6165976 6166001 -183113553 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 205 153 0 85 chr6 6167804 6167863 -183111691 + A-rich Low_complexity Low_complexity 2 55 0 573 188 92 61 chr6 6168658 6168887 -183110667 - MER20B DNA MER1_type 0 783 548 6199 222 57 39 chr6 6168981 6170669 -183108885 + L1M4 LINE L1 14 1936 -1069 4113 190 31 18 chr6 6170837 6171970 -183107584 + L1MB7 LINE L1 4963 6107 -77 1746 147 25 21 chr6 6171971 6172256 -183107298 + AluJb SINE Alu 1 286 -26 23 0 0 0 chr6 6172351 6172374 -183107180 + AT_rich Low_complexity Low_complexity 1 23 0 403 109 16 0 chr6 6172374 6172438 -183107116 - Alu SINE Alu -15 297 233 1190 239 68 23 chr6 6172855 6173249 -183106305 - L1ME3A LINE L1 -10 6160 5749 549 264 43 40 chr6 6173249 6173268 -183106286 - L2 LINE L2 -311 3002 2985 2334 92 3 10 chr6 6173268 6173574 -183105980 + AluSq SINE Alu 1 304 -9 549 264 43 40 chr6 6173574 6173814 -183105740 - L2 LINE L2 -328 2985 2744 1758 113 55 24 chr6 6173914 6174205 -183105349 - THE1C LTR MaLR -75 300 1 1833 150 32 0 chr6 6174237 6174517 -183105037 - AluJb SINE Alu -23 289 1 2019 128 3 0 chr6 6174710 6174999 -183104555 - AluSc SINE Alu -19 290 1 1099 311 12 50 chr6 6175967 6176449 -183103105 - L2 LINE L2 0 3272 2809 1053 155 22 43 chr6 6176503 6176735 -183102819 - AluJo SINE Alu 0 312 86 314 242 62 0 chr6 6176786 6176914 -183102640 + AluSp SINE Alu 15 150 -153 961 101 0 0 chr6 6177045 6177164 -183102390 - AluSq/x SINE Alu -194 119 1 588 210 8 0 chr6 6177171 6177295 -183102259 - FLAM_C SINE Alu -10 133 9 2262 105 0 7 chr6 6177310 6177615 -183101939 - AluSx SINE Alu -9 303 1 387 127 0 0 chr6 6177625 6177688 -183101866 + (ATG)n Simple_repeat Simple_repeat 3 65 0 206 242 48 48 chr6 6178276 6178338 -183101216 + L2 LINE L2 3025 3086 -186 2170 110 3 3 chr6 6178700 6179000 -183100554 + AluSx SINE Alu 2 301 -11 1638 119 12 0 chr6 6179261 6179505 -183100049 + L1PA16 LINE L1 5792 6038 -128 1326 92 6 6 chr6 6179505 6179679 -183099875 + AluSq SINE Alu 1 174 -139 43787 35 24 1 chr6 6179780 6185650 -183093904 - L1PA3 LINE L1 -150 6005 1 352 272 243 6 chr6 6186097 6186266 -183093288 - MIR SINE MIR -34 228 20 2101 131 0 16 chr6 6186284 6186590 -183092964 + AluSx SINE Alu 1 301 -11 446 117 0 0 chr6 6186631 6186691 -183092863 + AluS SINE Alu 11 70 -239 1714 227 30 59 chr6 6186988 6187565 -183091989 - MER68 LTR ERV1 0 562 3 865 158 33 0 chr6 6188939 6189091 -183090463 - L1MB2 LINE L1 -3 6168 6012 515 284 0 16 chr6 6189103 6189286 -183090268 + (TG)n Simple_repeat Simple_repeat 1 180 0 219 69 0 0 chr6 6189984 6190013 -183089541 + (TG)n Simple_repeat Simple_repeat 2 30 0 447 256 141 0 chr6 6190074 6190230 -183089324 + MIR SINE MIR 75 252 -10 2144 60 26 0 chr6 6190548 6190813 -183088741 - AluY SINE Alu -39 272 1 316 178 0 109 chr6 6191983 6192084 -183087470 - L1MC4 LINE L1 -1339 6703 6614 711 227 99 147 chr6 6192207 6192771 -183086783 + MLT1H1 LTR MaLR 6 555 0 229 315 9 0 chr6 6193347 6193440 -183086114 - MIR SINE MIR -72 136 41 25 0 0 0 chr6 6195372 6195397 -183084157 + AT_rich Low_complexity Low_complexity 1 25 0 299 293 25 51 chr6 6195729 6195886 -183083668 - MER5A DNA MER1_type -36 153 1 2749 166 42 17 chr6 6196230 6196773 -183082781 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6198071 6198548 -183081006 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6199496 6199524 -183080030 + AT_rich Low_complexity Low_complexity 1 28 0 2173 102 0 3 chr6 6200485 6200780 -183078774 + AluSx SINE Alu 1 294 -18 317 261 48 106 chr6 6201762 6201901 -183077653 + MIR3 SINE MIR 22 149 -59 1954 128 3 23 chr6 6201901 6202206 -183077348 - AluSq SINE Alu -14 299 1 317 261 48 106 chr6 6202206 6202254 -183077300 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6202379 6202768 -183076786 + MLT1L LTR MaLR 163 580 -8 1981 135 3 10 chr6 6202806 6203109 -183076445 - AluSx SINE Alu -11 301 1 286 313 70 35 chr6 6204082 6204280 -183075274 - MIR SINE MIR -11 251 42 2248 127 50 14 chr6 6204787 6205149 -183074405 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6205563 6206228 -183073326 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6206434 6206460 -183073094 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6207416 6207492 -183072062 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6207566 6207864 -183071690 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6207864 6208170 -183071384 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6208170 6208273 -183071281 - L1ME LINE L1 -754 5367 5265 2230 4 0 4 chr6 6208704 6208977 -183070577 - AluYa5 SINE Alu 0 341 70 1117 139 19 48 chr6 6208982 6209191 -183070363 - MER49 LTR ERV1 -716 207 5 188 172 121 17 chr6 6209365 6209423 -183070131 - MIR SINE MIR -115 147 84 * 492 274 8 0 chr6 6209419 6209543 -183070011 + MIR SINE MIR 25 149 -113 689 240 116 25 chr6 6209562 6209971 -183069583 - LTR33A LTR ERVL -25 498 9 287 219 19 86 chr6 6210380 6210431 -183069123 + L2 LINE L2 3215 3259 -54 2003 128 4 0 chr6 6210431 6210748 -183068806 + AluSx SINE Alu 1 318 0 287 219 19 86 chr6 6210748 6210799 -183068755 + L2 LINE L2 3259 3312 -1 365 257 121 51 chr6 6210822 6211079 -183068475 + L2 LINE L2 2487 2761 -553 380 295 38 0 chr6 6211857 6211962 -183067592 - L2 LINE L2 -5 3308 3200 3816 143 5 0 chr6 6212950 6213503 -183066051 - MER41D LTR ERV1 0 557 2 300 205 63 87 chr6 6215388 6215515 -183064039 + MIR SINE MIR 18 141 -67 691 239 35 78 chr6 6215906 6216087 -183063467 - MER58A DNA MER1_type -2196 224 53 2266 79 4 0 chr6 6216087 6216400 -183063154 + AluY SINE Alu 1 314 0 691 239 35 78 chr6 6216400 6216447 -183063107 - MER58A DNA MER1_type -2367 53 5 256 297 126 18 chr6 6216826 6216937 -183062617 - MIR SINE MIR -79 183 61 2122 126 0 7 chr6 6217109 6217411 -183062143 + AluSq SINE Alu 2 301 -12 245 362 21 11 chr6 6217516 6217610 -183061944 - MIR SINE MIR -78 130 36 554 270 54 32 chr6 6217636 6217821 -183061733 + MIR SINE MIR 10 198 -64 532 238 71 8 chr6 6217843 6217969 -183061585 + L2 LINE L2 3179 3312 -1 1552 171 92 18 chr6 6219587 6219868 -183059686 + AluJo SINE Alu 1 302 0 393 100 17 0 chr6 6220097 6220157 -183059397 - MADE1 DNA Mariner -17 63 3 872 158 0 0 chr6 6220985 6221118 -183058436 - AluJo SINE Alu -178 134 2 416 293 246 6 chr6 6221332 6221653 -183057901 - L2 LINE L2 -877 2437 2040 1335 293 179 28 chr6 6222109 6223034 -183056520 - L2 LINE L2 -641 2673 1609 793 210 30 0 chr6 6223034 6223201 -183056353 - MER5B DNA MER1_type 0 178 7 324 299 104 44 chr6 6223196 6223514 -183056040 - L2 LINE L2 -1704 1610 1274 * 192 125 31 0 chr6 6224488 6224520 -183055034 + MER5B DNA MER1_type 15 47 -131 * 622 177 92 0 chr6 6224494 6224624 -183054930 - MER5A DNA MER1_type -21 168 27 534 157 14 71 chr6 6224626 6224766 -183054788 + AluJo SINE Alu 92 223 -89 2344 110 0 0 chr6 6224830 6225140 -183054414 + AluSg SINE Alu 1 310 0 214 292 0 0 chr6 6227020 6227068 -183052486 - L2 LINE L2 -48 3224 3177 194 286 0 18 chr6 6227719 6227775 -183051779 + L2 LINE L2 3213 3267 -5 246 32 0 0 chr6 6228059 6228090 -183051464 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 27 29 0 0 chr6 6230249 6230283 -183049271 + AT_rich Low_complexity Low_complexity 1 34 0 275 260 0 14 chr6 6230534 6230607 -183048947 - L2 LINE L2 -2 3270 3199 720 206 96 48 chr6 6230626 6230835 -183048719 + MIR SINE MIR 20 238 -24 827 265 83 54 chr6 6231582 6232088 -183047466 - L1MC4a LINE L1 -672 5479 5358 238 278 9 37 chr6 6232172 6232280 -183047274 - L1MC4a LINE L1 -1164 4982 4878 277 198 78 103 chr6 6232378 6232494 -183047060 - MLT1H LTR MaLR 0 549 437 317 248 186 9 chr6 6232714 6232827 -183046727 - MLT1H LTR MaLR -374 175 43 2022 118 56 0 chr6 6232933 6233220 -183046334 - AluSx SINE Alu -9 303 1 299 269 57 57 chr6 6233244 6233437 -183046117 - L1MC4a LINE L1 -1487 4659 4467 * 706 217 63 146 chr6 6233429 6234154 -183045400 - L1MC5 LINE L1 -21 7940 7276 379 173 0 27 chr6 6234284 6234359 -183045195 - L1MC5 LINE L1 -754 7207 7135 235 301 12 48 chr6 6238360 6238443 -183041111 - MIR3 SINE MIR -123 85 6 2066 102 47 4 chr6 6240573 6240848 -183038706 + AluSp SINE Alu 1 287 -26 670 249 34 28 chr6 6240921 6241098 -183038456 - MER20 DNA MER1_type -39 180 3 216 280 0 0 chr6 6241101 6241151 -183038403 + MIR SINE MIR 102 151 -111 313 340 29 0 chr6 6241268 6241371 -183038183 + MIR SINE MIR 39 144 -64 352 293 47 9 chr6 6242366 6242472 -183037082 - MIR SINE MIR -74 134 25 774 161 0 37 chr6 6242749 6242998 -183036556 + (ATGGTG)n Simple_repeat Simple_repeat 1 239 0 421 322 134 0 chr6 6243016 6243165 -183036389 - L2 LINE L2 0 3272 3104 214 333 129 11 chr6 6245478 6245571 -183033983 - MIR SINE MIR -125 137 34 202 318 34 23 chr6 6246247 6246335 -183033219 - L2 LINE L2 -1 3312 3224 3015 230 79 53 chr6 6246608 6247352 -183032202 - L1ME2 LINE L1 0 6164 5441 189 0 0 0 chr6 6247352 6247373 -183032181 + (TA)n Simple_repeat Simple_repeat 1 21 0 3015 230 79 53 chr6 6247373 6248188 -183031366 - L1ME2 LINE L1 -723 5441 4577 413 304 95 86 chr6 6248236 6248595 -183030959 - L2 LINE L2 0 3272 2911 2908 230 29 27 chr6 6249775 6251163 -183028391 - L1ME1 LINE L1 -5 6161 4776 989 241 126 34 chr6 6251209 6251741 -183027813 - HAL1b LINE L1 -221 1127 547 10875 194 75 3 chr6 6251784 6256501 -183023053 - L1PBa LINE L1 -1801 5061 6 308 197 61 0 chr6 6256515 6256581 -183022973 - HAL1b LINE L1 -1169 179 110 24 0 0 0 chr6 6256666 6256690 -183022864 + AT_rich Low_complexity Low_complexity 1 24 0 180 152 0 0 chr6 6256847 6256880 -183022674 + CT-rich Low_complexity Low_complexity 2 34 0 2073 124 10 0 chr6 6257334 6257624 -183021930 - AluSx SINE Alu -7 305 13 478 257 193 0 chr6 6259669 6259809 -183019745 - MER5A DNA MER1_type -2 187 21 1834 177 26 10 chr6 6260286 6260591 -183018963 + AluJo SINE Alu 1 310 -2 21 57 0 0 chr6 6261812 6261847 -183017707 + AT_rich Low_complexity Low_complexity 1 35 0 486 215 189 5 chr6 6264423 6264611 -183014943 - MIR SINE MIR -6 256 39 345 75 0 0 chr6 6265495 6265548 -183014006 + (CA)n Simple_repeat Simple_repeat 2 54 0 462 238 119 7 chr6 6265983 6266126 -183013428 + MIR SINE MIR 8 166 -96 592 294 10 30 chr6 6266464 6266661 -183012893 + MIR SINE MIR 21 213 -49 235 276 17 0 chr6 6266747 6266805 -183012749 + G-rich Low_complexity Low_complexity 4 62 0 220 368 18 35 chr6 6268028 6268142 -183011412 + L2 LINE L2 3141 3252 -20 21 57 0 0 chr6 6270231 6270266 -183009288 + AT_rich Low_complexity Low_complexity 1 35 0 1801 180 26 10 chr6 6271486 6271791 -183007763 - AluJo SINE Alu -2 310 1 455 264 193 0 chr6 6272268 6272408 -183007146 + MER5A DNA MER1_type 21 187 -2 2050 128 10 0 chr6 6274453 6274742 -183004812 + AluSx SINE Alu 13 304 -8 180 152 0 0 chr6 6275196 6275229 -183004325 + GA-rich Low_complexity Low_complexity 2 34 0 24 0 0 0 chr6 6275386 6275410 -183004144 + AT_rich Low_complexity Low_complexity 1 24 0 308 197 61 0 chr6 6275495 6275561 -183003993 + HAL1b LINE L1 110 179 -1169 10878 194 74 3 chr6 6275575 6280294 -182999260 + L1PBa LINE L1 6 5061 -1801 989 241 126 34 chr6 6280337 6280869 -182998685 + HAL1b LINE L1 547 1127 -221 2930 229 29 27 chr6 6280915 6282303 -182997251 + L1ME1 LINE L1 4776 6161 -5 413 304 95 86 chr6 6283483 6283842 -182995712 + L2 LINE L2 2911 3272 0 2769 232 55 50 chr6 6283946 6285467 -182994087 + L1ME2 LINE L1 4633 6164 0 204 318 34 23 chr6 6285739 6285827 -182993727 + L2 LINE L2 3224 3312 -1 207 333 129 11 chr6 6286503 6286596 -182992958 + MIR SINE MIR 34 137 -125 433 322 134 0 chr6 6288920 6289069 -182990485 + L2 LINE L2 3104 3272 0 774 161 0 37 chr6 6289087 6289336 -182990218 + (CACCAT)n Simple_repeat Simple_repeat 1 239 0 349 293 47 9 chr6 6289613 6289719 -182989835 + MIR SINE MIR 25 134 -74 314 340 29 0 chr6 6290714 6290817 -182988737 - MIR SINE MIR -64 144 39 217 280 0 0 chr6 6290934 6290984 -182988570 - MIR SINE MIR -111 151 102 612 244 30 30 chr6 6290996 6291164 -182988390 + MER20 DNA MER1_type 13 180 -39 2070 102 47 4 chr6 6291237 6291512 -182988042 - AluSp SINE Alu -26 287 1 236 301 12 48 chr6 6293642 6293725 -182985829 + MIR3 SINE MIR 6 85 -123 339 173 0 27 chr6 6297726 6297801 -182981753 + L1MC5 LINE L1 7135 7207 -754 467 225 52 147 chr6 6297931 6298630 -182980924 + L1MC5 LINE L1 7276 7907 -54 299 269 34 63 chr6 6298666 6298841 -182980713 + L1MC4a LINE L1 4490 4659 -1487 2032 118 56 0 chr6 6298865 6299152 -182980402 + AluSx SINE Alu 1 303 -9 317 248 186 9 chr6 6299258 6299371 -182980183 + MLT1H LTR MaLR 43 175 -374 277 198 78 103 chr6 6299591 6299707 -182979847 + MLT1H LTR MaLR 437 549 0 827 265 83 54 chr6 6299997 6300503 -182979051 + L1MC4a LINE L1 5358 5479 -672 720 206 96 48 chr6 6301250 6301459 -182978095 - MIR SINE MIR -24 238 20 275 260 0 14 chr6 6301478 6301551 -182978003 + L2 LINE L2 3199 3270 -2 27 29 0 0 chr6 6301802 6301836 -182977718 + AT_rich Low_complexity Low_complexity 1 34 0 246 32 0 0 chr6 6303995 6304026 -182975528 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 194 286 0 18 chr6 6304310 6304366 -182975188 - L2 LINE L2 -5 3267 3213 214 292 0 0 chr6 6305017 6305065 -182974489 + L2 LINE L2 3177 3224 -48 2344 110 0 0 chr6 6306945 6307255 -182972299 - AluSg SINE Alu 0 310 1 534 157 14 71 chr6 6307320 6307460 -182972094 - AluJo SINE Alu -89 223 92 621 165 94 0 chr6 6307462 6307589 -182971965 + MER5A DNA MER1_type 27 165 -24 183 156 31 0 chr6 6307566 6307598 -182971956 - MER5B DNA MER1_type -131 47 15 * 324 299 104 44 chr6 6308572 6308890 -182970664 + L2 LINE L2 1274 1610 -1704 * 793 210 30 0 chr6 6308885 6309052 -182970502 + MER5B DNA MER1_type 7 178 0 1335 293 179 28 chr6 6309052 6309977 -182969577 + L2 LINE L2 1609 2673 -641 416 293 246 6 chr6 6310433 6310754 -182968800 + L2 LINE L2 2040 2437 -877 872 158 0 0 chr6 6310968 6311101 -182968453 + AluJo SINE Alu 2 134 -178 393 100 17 0 chr6 6311929 6311989 -182967565 + MADE1 DNA Mariner 3 63 -17 1493 165 90 18 chr6 6312221 6312500 -182967054 - AluJo SINE Alu -13 299 1 532 238 71 8 chr6 6314118 6314244 -182965310 - L2 LINE L2 -1 3312 3179 554 270 54 32 chr6 6314266 6314451 -182965103 - MIR SINE MIR -64 198 10 245 362 21 11 chr6 6314477 6314571 -182964983 + MIR SINE MIR 36 130 -78 2165 119 0 7 chr6 6314676 6314978 -182964576 - AluSq SINE Alu -12 301 2 256 297 126 18 chr6 6315150 6315261 -182964293 + MIR SINE MIR 61 183 -79 691 239 35 78 chr6 6315640 6315687 -182963867 + MER58A DNA MER1_type 5 53 -2367 2265 79 4 0 chr6 6315687 6316000 -182963554 - AluY SINE Alu 0 314 1 691 239 35 78 chr6 6316000 6316181 -182963373 + MER58A DNA MER1_type 53 224 0 300 205 63 87 chr6 6316572 6316699 -182962855 - MIR SINE MIR -67 141 18 3816 143 5 0 chr6 6318584 6319137 -182960417 + MER41D LTR ERV1 2 557 0 380 295 38 0 chr6 6320125 6320230 -182959324 + L2 LINE L2 3200 3308 -5 379 257 158 46 chr6 6321008 6321292 -182958262 - L2 LINE L2 -553 2761 2446 287 219 19 86 chr6 6321289 6321340 -182958214 - L2 LINE L2 -1 3312 3268 * 2002 128 4 0 chr6 6321340 6321657 -182957897 - AluSx SINE Alu 0 318 1 287 219 19 86 chr6 6321657 6321708 -182957846 - L2 LINE L2 -45 3268 3215 689 240 116 25 chr6 6322117 6322526 -182957028 + LTR33A LTR ERVL 9 498 -25 492 274 8 0 chr6 6322545 6322669 -182956885 - MIR SINE MIR -113 149 25 188 172 121 17 chr6 6322665 6322723 -182956831 + MIR SINE MIR 84 147 -115 * 5399 169 10 24 chr6 6322897 6323111 -182956443 + MER49 LTR ERV1 5 220 -703 2230 4 0 4 chr6 6323111 6323354 -182956200 + AluYa5 SINE Alu 70 311 0 5399 169 10 24 chr6 6323354 6324071 -182955483 + MER49 LTR ERV1 220 923 0 1013 235 169 20 chr6 6324109 6324500 -182955054 - L2 LINE L2 -10 3303 2855 503 224 241 11 chr6 6324741 6324915 -182954639 - L2 LINE L2 -448 2866 2653 440 160 0 0 chr6 6327549 6327624 -182951930 + MLT1E2 LTR MaLR 552 626 0 2412 79 0 3 chr6 6327700 6328005 -182951549 + AluY SINE Alu 1 304 -7 760 259 97 69 chr6 6328119 6328439 -182951115 + L1MC4 LINE L1 6749 7077 -965 381 252 36 9 chr6 6328454 6328565 -182950989 + L1MC4a LINE L1 7161 7274 -534 1627 231 53 17 chr6 6328582 6328997 -182950557 + LTR16A LTR ERVL 16 445 -5 1978 230 68 23 chr6 6329000 6329527 -182950027 + L1MC4 LINE L1 7351 7901 -141 1654 108 0 22 chr6 6331018 6331249 -182948305 + AluSg/x SINE Alu 69 294 -18 3906 153 59 23 chr6 6331621 6332104 -182947450 + MER50 LTR ERV1 1 518 -216 1909 146 42 0 chr6 6332104 6332391 -182947163 + AluSx SINE Alu 1 299 -13 3906 153 59 23 chr6 6332391 6332604 -182946950 + MER50 LTR ERV1 518 722 -12 4821 161 31 43 chr6 6334029 6334971 -182944583 - L1MA7 LINE L1 -39 6252 5323 258 32 0 0 chr6 6335420 6335451 -182944103 + (CA)n Simple_repeat Simple_repeat 2 32 0 458 301 45 0 chr6 6336458 6336614 -182942940 + MER103 DNA DNA 4 166 0 516 341 131 34 chr6 6337258 6337938 -182941616 + L2 LINE L2 1606 2351 -963 388 283 62 14 chr6 6338015 6338160 -182941394 + MIR SINE MIR 41 192 -70 244 332 48 40 chr6 6338268 6338518 -182941036 + L2 LINE L2 2397 2648 -666 717 139 0 0 chr6 6339699 6339821 -182939733 + (GGGA)n Simple_repeat Simple_repeat 3 124 0 383 58 0 0 chr6 6340053 6340105 -182939449 + L1PA15 LINE L1 6101 6152 -13 2754 72 69 8 chr6 6340124 6340501 -182939053 + MLT2A1 LTR ERVL 1 400 -44 281 197 14 0 chr6 6340501 6340572 -182938982 + (CA)n Simple_repeat Simple_repeat 2 73 0 328 148 0 0 chr6 6340572 6340626 -182938928 + MLT2A1 LTR ERVL 400 453 0 43423 36 22 1 chr6 6340732 6346757 -182932797 - L1PA3 LINE L1 0 6155 1 778 266 50 8 chr6 6347816 6348057 -182931497 + LTR16A LTR ERVL 200 450 0 2916 158 62 38 chr6 6348286 6348836 -182930718 - MER7C DNA MER2_type -39 563 1 312 306 60 75 chr6 6348898 6349150 -182930404 - L1M4 LINE L1 -1099 5047 4800 572 291 87 48 chr6 6349317 6349384 -182930170 - L1M4 LINE L1 -1528 4618 4555 1568 96 35 78 chr6 6349384 6349666 -182929888 - L1MA7 LINE L1 -10 6281 6012 572 291 87 48 chr6 6349666 6350395 -182929159 - L1M4 LINE L1 -1591 4555 3791 327 220 140 80 chr6 6350463 6350568 -182928986 + MER103 DNA DNA 2 120 -46 2027 143 7 3 chr6 6350568 6350869 -182928685 + AluSx SINE Alu 1 302 -10 327 220 140 80 chr6 6350869 6350913 -182928641 + MER103 DNA DNA 120 160 -6 192 279 66 142 chr6 6352318 6352501 -182927053 + MIR SINE MIR 74 242 -20 370 308 134 0 chr6 6352986 6353158 -182926396 + MIR SINE MIR 47 241 -21 1129 321 44 90 chr6 6353642 6354017 -182925537 - L3 LINE CR1 -7 1570 1179 2011 116 3 34 chr6 6354017 6354311 -182925243 - AluSx SINE Alu -27 285 1 1129 321 44 90 chr6 6354311 6354592 -182924962 - L3 LINE CR1 -398 1179 971 1742 136 0 39 chr6 6354592 6354872 -182924682 - AluSx SINE Alu -3 309 41 1129 321 44 90 chr6 6354872 6355195 -182924359 - L3 LINE CR1 -606 971 635 548 326 66 48 chr6 6355301 6355785 -182923769 - L2 LINE L2 -173 3099 2600 519 276 79 0 chr6 6356156 6356308 -182923246 + MER103 DNA DNA 1 164 -2 490 264 36 0 chr6 6356356 6356466 -182923088 + MIR SINE MIR 64 177 -85 207 100 0 0 chr6 6356492 6356522 -182923032 + (TTA)n Simple_repeat Simple_repeat 1 30 0 804 221 164 5 chr6 6356535 6356748 -182922806 + MIR SINE MIR 8 254 -8 209 139 42 14 chr6 6357572 6357644 -182921910 + (TA)n Simple_repeat Simple_repeat 2 75 0 335 126 82 0 chr6 6357657 6357816 -182921738 + (TA)n Simple_repeat Simple_repeat 1 172 0 243 163 43 21 chr6 6357905 6358046 -182921508 + (TA)n Simple_repeat Simple_repeat 1 144 0 2276 75 0 29 chr6 6358378 6358684 -182920870 + AluSc SINE Alu 1 297 -12 180 0 0 0 chr6 6359269 6359289 -182920265 + (T)n Simple_repeat Simple_repeat 1 20 0 2361 82 7 0 chr6 6359975 6360268 -182919286 - AluSq SINE Alu -18 295 1 273 301 58 122 chr6 6360434 6360810 -182918744 + L2 LINE L2 2920 3271 -1 585 0 0 0 chr6 6362067 6362132 -182917422 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 0 0 0 chr6 6362269 6362290 -182917264 + AT_rich Low_complexity Low_complexity 1 21 0 358 307 90 2 chr6 6362712 6362940 -182916614 - MIR SINE MIR -6 256 3 422 309 99 0 chr6 6364192 6364357 -182915197 - MIR3 SINE MIR -9 199 13 420 303 55 43 chr6 6365149 6365403 -182914151 - L2 LINE L2 -5 3308 3052 281 294 174 18 chr6 6365592 6365810 -182913744 + MARNA DNA Mariner 271 522 -64 202 275 0 29 chr6 6366818 6366887 -182912667 + C-rich Low_complexity Low_complexity 4 70 0 180 355 109 32 chr6 6367354 6367368 -182912186 + L2 LINE L2 1294 1305 -2009 1880 135 83 0 chr6 6367368 6367656 -182911898 - AluSx SINE Alu 0 312 1 180 355 109 32 chr6 6367656 6367861 -182911693 + L2 LINE L2 1305 1530 -1784 325 251 140 25 chr6 6368035 6368270 -182911284 + L2 LINE L2 1790 2051 -1263 619 351 11 24 chr6 6368284 6368666 -182910888 + L2 LINE L2 2175 2551 -763 281 316 95 30 chr6 6368673 6368841 -182910713 + L2 LINE L2 2654 2832 -482 698 199 33 7 chr6 6369931 6370082 -182909472 - LTR33A LTR ERVL 0 523 369 358 294 66 15 chr6 6370181 6370317 -182909237 - LTR33A LTR ERVL -318 205 63 2679 184 28 54 chr6 6370344 6370919 -182908635 - MER68 LTR ERV1 0 562 3 905 154 51 0 chr6 6372294 6372450 -182907104 - L1MB2 LINE L1 -3 6168 6005 499 290 0 16 chr6 6372458 6372641 -182906913 + (TG)n Simple_repeat Simple_repeat 1 180 0 255 61 0 0 chr6 6373339 6373372 -182906182 + (TG)n Simple_repeat Simple_repeat 2 34 0 492 256 141 0 chr6 6373433 6373589 -182905965 + MIR SINE MIR 75 252 -10 2206 53 23 0 chr6 6373906 6374172 -182905382 - AluY SINE Alu -39 272 1 329 178 0 109 chr6 6375342 6375443 -182904111 - L1MC4 LINE L1 -1339 6703 6614 707 227 99 147 chr6 6375566 6376130 -182903424 + MLT1H1 LTR MaLR 6 555 0 265 365 31 2 chr6 6376699 6376825 -182902729 - MIR SINE MIR -62 146 15 207 269 46 65 chr6 6377075 6377183 -182902371 - L2 LINE L2 -10 3303 3198 28 0 0 0 chr6 6378731 6378759 -182900795 + AT_rich Low_complexity Low_complexity 1 28 0 345 293 25 51 chr6 6379091 6379248 -182900306 - MER5A DNA MER1_type -36 153 1 2932 162 44 18 chr6 6379592 6380135 -182899419 - MER89 LTR ERV1 0 559 3 1333 277 78 23 chr6 6381432 6381909 -182897645 + MLT1J LTR MaLR 7 509 -2 21 36 0 0 chr6 6382857 6382885 -182896669 + AT_rich Low_complexity Low_complexity 1 28 0 2199 99 0 3 chr6 6383844 6384138 -182895416 + AluSx SINE Alu 1 293 -19 302 266 48 106 chr6 6385120 6385259 -182894295 + MIR3 SINE MIR 22 149 -59 1931 130 3 26 chr6 6385259 6385566 -182893988 - AluSq SINE Alu -13 300 1 302 266 48 106 chr6 6385566 6385614 -182893940 + MIR3 SINE MIR 149 198 -10 336 287 146 30 chr6 6385739 6386128 -182893426 + MLT1L LTR MaLR 163 580 -8 2063 128 0 10 chr6 6386166 6386470 -182893084 - AluSx SINE Alu -11 301 1 283 301 46 43 chr6 6387474 6387637 -182891917 - MIR SINE MIR -50 158 42 2248 127 50 14 chr6 6388144 6388506 -182891048 + THE1C LTR MaLR 1 375 0 1173 226 46 91 chr6 6388920 6389585 -182889969 - L1ME LINE L1 -4925 1653 1031 213 39 0 0 chr6 6389791 6389817 -182889737 + (TAA)n Simple_repeat Simple_repeat 2 27 0 257 342 0 0 chr6 6390773 6390849 -182888705 - MIR3 SINE MIR -21 187 112 407 293 77 87 chr6 6390923 6391221 -182888333 - L1ME LINE L1 -459 5662 5367 2333 101 0 3 chr6 6391221 6391527 -182888027 - AluSq SINE Alu 0 313 9 407 293 77 87 chr6 6391527 6391630 -182887924 - L1ME LINE L1 -754 5367 5265 2434 103 0 0 chr6 6392061 6392402 -182887152 - AluSx SINE Alu 0 342 2 387 340 48 50 chr6 6393536 6393956 -182885598 - L1ME LINE L1 -1077 5069 4651 2005 200 100 21 chr6 6395261 6395740 -182883814 + L1MC4 LINE L1 7306 7822 -220 295 333 28 14 chr6 6395746 6395887 -182883667 - MLT1J LTR MaLR -360 151 9 2299 94 0 7 chr6 6397070 6397378 -182882176 + AluSg SINE Alu 1 306 -4 1235 171 34 41 chr6 6397992 6398261 -182881293 - AluJo SINE Alu -45 267 1 2008 141 0 7 chr6 6398521 6398825 -182880729 + AluSx SINE Alu 1 302 -10 274 113 75 30 chr6 6398852 6398985 -182880569 + (CA)n Simple_repeat Simple_repeat 1 139 0 423 0 0 0 chr6 6399208 6399255 -182880299 + (CA)n Simple_repeat Simple_repeat 1 47 0 231 36 0 0 chr6 6399814 6399842 -182879712 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 234 240 60 0 chr6 6399924 6400024 -182879530 + (TA)n Simple_repeat Simple_repeat 2 107 0 493 299 38 53 chr6 6400036 6400301 -182879253 - MIR SINE MIR -5 257 1 297 51 0 0 chr6 6400728 6400767 -182878787 + (TG)n Simple_repeat Simple_repeat 2 40 0 225 170 94 0 chr6 6401365 6401418 -182878136 + MER53 DNA DNA 1 58 -131 503 189 134 0 chr6 6401456 6401583 -182877971 + MER53 DNA DNA 46 189 0 304 331 45 22 chr6 6402456 6402634 -182876920 + MIR SINE MIR 31 212 -50 2897 137 16 6 chr6 6404564 6405067 -182874487 - L1MC3 LINE L1 0 7785 7278 228 259 152 45 chr6 6405542 6405654 -182873900 - MIR SINE MIR -14 248 125 621 303 137 16 chr6 6406163 6406668 -182872886 + L1MC4a LINE L1 5264 5829 -1979 265 325 73 24 chr6 6409061 6409184 -182870370 - L2 LINE L2 0 3272 3144 1616 78 8 21 chr6 6409407 6409649 -182869905 + MER75B DNA T2_type 1 239 -4 377 177 13 0 chr6 6409876 6409955 -182869599 + (TA)n Simple_repeat Simple_repeat 2 81 0 2121 301 93 31 chr6 6409966 6411150 -182868404 - L2 LINE L2 -167 3146 1896 277 250 0 24 chr6 6411151 6411207 -182868347 + MER94 DNA DNA 4 57 -77 1506 208 33 43 chr6 6411207 6411687 -182867867 - MLT1F LTR MaLR 0 542 5 277 297 0 0 chr6 6411696 6411770 -182867784 + MER94 DNA DNA 61 134 0 262 182 0 0 chr6 6412013 6412057 -182867497 + MLT1K LTR MaLR 434 477 -111 1064 159 67 24 chr6 6413964 6414172 -182865382 - MER20 DNA MER1_type 0 219 3 437 264 50 0 chr6 6414240 6414361 -182865193 - MIR3 SINE MIR -44 164 38 240 59 0 0 chr6 6414487 6414521 -182865033 - MADE1 DNA Mariner -46 34 1 343 43 0 0 chr6 6414598 6414644 -182864910 - MADE1 DNA Mariner -34 46 1 813 73 0 0 chr6 6415148 6415257 -182864297 + (GAAA)n Simple_repeat Simple_repeat 2 110 0 240 111 0 0 chr6 6415261 6415297 -182864257 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 24 32 0 0 chr6 6415720 6415751 -182863803 + AT_rich Low_complexity Low_complexity 1 31 0 273 355 41 86 chr6 6416109 6416377 -182863177 - L2 LINE L2 -92 3180 2925 208 321 0 0 chr6 6416665 6416718 -182862836 - MER5A DNA MER1_type 0 189 137 2495 175 50 2 chr6 6416718 6417214 -182862340 + L1MB3 LINE L1 5662 6181 -2 13902 197 15 4 chr6 6417291 6421739 -182857815 + L1P5 LINE L1 1818 6373 -494 377 290 95 6 chr6 6471760 6471929 -182807625 - L2 LINE L2 -874 2440 2257 1016 142 0 44 chr6 6471929 6472112 -182807442 + FRAM SINE Alu 1 172 -4 353 264 74 50 chr6 6472396 6472517 -182807037 + L2 LINE L2 3190 3313 0 308 174 14 0 chr6 6472580 6472649 -182806905 - L1MC4 LINE L1 -2 8040 7971 2376 77 0 3 chr6 6472672 6472971 -182806583 - AluY SINE Alu -13 298 1 2032 116 0 10 chr6 6472985 6473277 -182806277 - AluSx SINE Alu -23 289 1 1254 220 148 6 chr6 6473290 6473348 -182806206 - L1MC4 LINE L1 -65 7977 7929 275 49 24 0 chr6 6473348 6473389 -182806165 + (CA)n Simple_repeat Simple_repeat 2 43 0 1254 220 148 6 chr6 6473389 6473675 -182805879 - L1MC4 LINE L1 -113 7929 7584 324 0 0 0 chr6 6473687 6473723 -182805831 + (T)n Simple_repeat Simple_repeat 1 36 0 235 296 148 11 chr6 6474519 6474708 -182804846 - L2 LINE L2 -1094 2220 2006 517 271 23 8 chr6 6476052 6476185 -182803369 - MER97c DNA MER1_type? -952 138 4 307 284 0 0 chr6 6476810 6476884 -182802670 + L2 LINE L2 3239 3312 -1 235 315 33 33 chr6 6477101 6477193 -182802361 + MIR3 SINE MIR 86 177 -31 21 0 0 0 chr6 6477498 6477519 -182802035 + AT_rich Low_complexity Low_complexity 1 21 0 2682 152 163 10 chr6 6477551 6477991 -182801563 + MLT2B3 LTR ERVL 2 522 -32 572 40 13 0 chr6 6477991 6478066 -182801488 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 2682 152 163 10 chr6 6478066 6478105 -182801449 + MLT2B3 LTR ERVL 522 554 0 1614 104 22 0 chr6 6478268 6478490 -182801064 - L1PA8 LINE L1 -6 6166 5940 369 364 65 5 chr6 6478676 6478893 -182800661 - MIR SINE MIR -21 241 12 15807 135 24 8 chr6 6479457 6481837 -182797717 + Tigger1 DNA MER2_type 1 2418 0 3934 113 16 0 chr6 6483455 6484006 -182795548 + L1PB1 LINE L1 5584 6143 -8 227 257 14 40 chr6 6486060 6486134 -182793420 + CT-rich Low_complexity Low_complexity 4 75 0 2800 104 0 3 chr6 6486231 6486616 -182792938 + MER41B LTR ERV1 166 549 -86 2164 115 52 30 chr6 6487106 6487472 -182792082 + THE1C LTR MaLR 2 375 0 752 71 0 0 chr6 6488973 6489071 -182790483 + L1MA8 LINE L1 5998 6095 -196 261 286 98 9 chr6 6489461 6489573 -182789981 - MIR SINE MIR -22 240 119 325 321 37 0 chr6 6489719 6489828 -182789726 + L2 LINE L2 3200 3312 -1 1679 155 7 28 chr6 6490241 6490532 -182789022 - AluJb SINE Alu -27 285 1 2412 61 0 0 chr6 6491638 6491932 -182787622 + AluY SINE Alu 1 294 -17 229 343 82 29 chr6 6492539 6492746 -182786808 - L3b LINE CR1 -203 1380 1163 1885 205 130 53 chr6 6493451 6493958 -182785596 + MLT1H LTR MaLR 4 549 0 229 233 50 33 chr6 6494411 6494471 -182785083 + L2 LINE L2 3206 3266 -6 2118 135 3 0 chr6 6495569 6495872 -182783682 + AluSg SINE Alu 3 306 -4 367 252 58 0 chr6 6496304 6496407 -182783147 - L2 LINE L2 -1413 1901 1793 232 248 9 115 chr6 6497575 6497688 -182781866 + MIR SINE MIR 46 146 -62 264 122 0 0 chr6 6497957 6497998 -182781556 + (TTC)n Simple_repeat Simple_repeat 2 42 0 19820 29 2 2 chr6 6498567 6500911 -182778643 - L1P LINE L1 -931 5215 2872 380 132 26 13 chr6 6501013 6501089 -182778465 + MLT1D LTR MaLR 429 505 0 1868 191 132 4 chr6 6501089 6501550 -182778004 + L1MB7 LINE L1 5646 6165 -19 6236 64 0 4 chr6 6501672 6502419 -182777135 - L1PA8 LINE L1 -5 6167 5424 1661 84 0 28 chr6 6502416 6502670 -182776884 + L1PA8 LINE L1 5154 5400 -746 183 80 0 0 chr6 6505183 6505208 -182774346 + (CTCTG)n Simple_repeat Simple_repeat 2 26 0 3015 194 24 26 chr6 6505247 6505929 -182773625 + Tigger6a DNA MER2_type 1 680 -403 1974 149 0 0 chr6 6506702 6506990 -182772564 - AluSx SINE Alu -24 288 1 1430 288 51 13 chr6 6507232 6507759 -182771795 - MLT1H LTR MaLR 0 549 3 972 299 25 0 chr6 6507762 6508083 -182771471 - LTR16C LTR ERVL -9 482 154 674 216 46 32 chr6 6508192 6508410 -182771144 - L2 LINE L2 -1366 1948 1728 16237 26 1 0 chr6 6508971 6511661 -182767893 - L1PA3 LINE L1 -3 6152 3462 1159 246 129 14 chr6 6511735 6512170 -182767384 + L1MC4 LINE L1 7375 7859 -183 2505 53 0 0 chr6 6512273 6512589 -182766965 - L1P2 LINE L1 -358 5796 5480 15057 27 0 0 chr6 6512589 6515136 -182764418 - L1PA3 LINE L1 -3 6152 3606 1914 50 0 8 chr6 6515310 6515571 -182763983 - L1PA3 LINE L1 -2524 3622 3364 1099 263 134 10 chr6 6516477 6516888 -182762666 - LTR16B LTR ERVL 0 464 3 303 49 0 0 chr6 6517979 6518020 -182761534 + (TC)n Simple_repeat Simple_repeat 2 42 0 462 327 13 13 chr6 6518318 6518477 -182761077 - MIR SINE MIR -46 216 58 266 303 98 25 chr6 6518501 6518623 -182760931 - MIR SINE MIR -9 253 123 315 299 21 0 chr6 6520383 6520480 -182759074 + MER81 DNA DNA 1 99 -15 354 158 0 49 chr6 6522333 6522415 -182757139 - L1MC2 LINE L1 -13 6331 6254 669 231 0 0 chr6 6522432 6522597 -182756957 - FRAM SINE Alu 0 182 18 4928 168 64 35 chr6 6522608 6523721 -182755833 - L1MC3 LINE L1 -84 7701 6557 21 36 0 0 chr6 6524035 6524063 -182755491 + AT_rich Low_complexity Low_complexity 1 28 0 684 101 20 0 chr6 6524074 6524173 -182755381 - L1MC1 LINE L1 -5 6328 6228 15952 157 15 11 chr6 6524173 6526880 -182752674 - ERVL LTR ERVL -2300 3464 748 312 305 22 59 chr6 6526891 6527153 -182752401 + L1ME4a LINE L1 5385 5650 -516 8371 251 34 30 chr6 6527616 6528581 -182750973 + L1MB4 LINE L1 217 1177 -5205 2137 143 25 25 chr6 6528581 6528945 -182750609 - THE1B LTR MaLR 0 364 1 8371 251 34 30 chr6 6528945 6530814 -182748740 + L1MB4 LINE L1 1177 3037 -3345 23060 38 3 0 chr6 6530814 6534438 -182745116 + L1PA5 LINE L1 2513 6149 -5 8371 251 34 30 chr6 6534438 6535633 -182743921 + L1MB4 LINE L1 3037 4447 -1935 216 0 0 0 chr6 6535633 6535657 -182743897 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 8371 251 34 30 chr6 6535657 6536618 -182742936 + L1MB4 LINE L1 4447 5403 -979 2936 228 28 14 chr6 6536621 6537437 -182742117 + L1MB4 LINE L1 5588 6415 -1 590 339 85 14 chr6 6537931 6538214 -182741340 + MLT1H1 LTR MaLR 1 303 -252 744 294 162 7 chr6 6538439 6538884 -182740670 - L1MC4a LINE L1 -1919 5889 5376 21 0 0 0 chr6 6539098 6539119 -182740435 + AT_rich Low_complexity Low_complexity 1 21 0 4420 160 9 12 chr6 6539209 6540063 -182739491 - L1PB4 LINE L1 -1 6155 5304 1636 239 16 74 chr6 6540124 6540494 -182739060 - L1ME2 LINE L1 -22 6142 5829 1952 191 130 66 chr6 6540494 6541069 -182738485 - LTR9 LTR ERV1 0 612 1 1636 239 16 74 chr6 6541069 6541384 -182738170 - L1ME2 LINE L1 -335 5829 5497 490 242 160 50 chr6 6541488 6541769 -182737785 + L1ME4a LINE L1 5710 6021 -100 410 255 21 0 chr6 6541996 6542090 -182737464 + MIR3 SINE MIR 63 158 -50 1666 80 43 16 chr6 6542635 6543142 -182736412 - MER4A LTR ERV1 0 664 1 1220 222 102 21 chr6 6543213 6543645 -182735909 - MLT1C LTR MaLR 0 467 1 799 265 86 0 chr6 6543719 6543953 -182735601 - MIR SINE MIR 0 262 9 338 293 45 45 chr6 6544018 6544349 -182735205 + L1ME4a LINE L1 5552 5882 -239 4950 114 23 13 chr6 6545411 6546182 -182733372 + MER4E LTR ERV1 1 779 0 5000 34 0 0 chr6 6546733 6547324 -182732230 - LTR10C LTR ERV1 0 591 1 320 58 43 14 chr6 6549877 6549946 -182729608 + (TA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr6 6550997 6551019 -182728535 + AT_rich Low_complexity Low_complexity 1 22 0 3189 248 77 34 chr6 6551156 6552267 -182727287 + L1M4 LINE L1 39 1196 -5346 214 200 0 0 chr6 6552268 6552308 -182727246 + (TA)n Simple_repeat Simple_repeat 2 41 0 241 136 0 0 chr6 6552308 6552352 -182727202 + L1M4 LINE L1 1194 1237 -5305 4284 234 21 22 chr6 6552361 6553636 -182725918 + L1M4 LINE L1 3867 5147 -999 541 225 0 0 chr6 6553636 6553765 -182725789 + MLT2B3 LTR ERVL 1 129 -425 3031 26 0 4 chr6 6553765 6554164 -182725390 - L1P LINE L1 -730 5425 5028 6468 22 4 0 chr6 6554164 6554894 -182724660 + L1PA3 LINE L1 5419 6154 -1 2029 204 25 28 chr6 6554896 6555292 -182724262 + MLT2B3 LTR ERVL 122 516 -38 319 119 0 68 chr6 6555310 6555369 -182724185 + MLT2C2 LTR ERVL 407 461 -3 652 153 23 139 chr6 6555372 6555588 -182723966 + L1M4 LINE L1 5143 5333 -813 1056 179 0 39 chr6 6555593 6555800 -182723754 + AluJo SINE Alu 95 293 -19 755 172 38 19 chr6 6555802 6555959 -182723595 + L1M4 LINE L1 5323 5482 -702 342 318 139 9 chr6 6556764 6556987 -182722567 + MER112 DNA MER1_type 1 252 -8 403 278 56 0 chr6 6557005 6557131 -182722423 + HAL1 LINE L1 11 143 -2364 430 299 41 7 chr6 6557552 6557699 -182721855 + MLT1L LTR MaLR 428 579 -36 864 289 64 13 chr6 6557707 6558084 -182721470 + HAL1 LINE L1 1379 1774 -733 2504 232 40 2 chr6 6558237 6558768 -182720786 - MLT1F1 LTR MaLR -16 551 1 252 316 83 32 chr6 6558816 6558944 -182720610 + HAL1 LINE L1 2046 2166 -341 1661 129 43 0 chr6 6558944 6559200 -182720354 + AluSx SINE Alu 1 267 -45 252 316 83 32 chr6 6559200 6559324 -182720230 + HAL1 LINE L1 2166 2311 -196 * 5352 157 84 20 chr6 6559295 6560812 -182718742 + L1MC1 LINE L1 4720 6333 0 182 318 131 50 chr6 6561944 6562409 -182717145 + L2 LINE L2 1754 2256 -1058 728 295 214 21 chr6 6563504 6563935 -182715619 + L2 LINE L2 2205 2718 -596 569 212 58 0 chr6 6565586 6565723 -182713831 - MIR SINE MIR -14 248 104 312 291 138 26 chr6 6565934 6566123 -182713431 + L2 LINE L2 2210 2419 -895 1532 264 73 31 chr6 6566268 6566786 -182712768 + MLT1F1 LTR MaLR 9 548 -19 359 348 105 0 chr6 6566797 6566978 -182712576 + L2 LINE L2 2649 2848 -466 2014 124 7 0 chr6 6567835 6568125 -182711429 - AluSx SINE Alu -20 292 1 284 246 55 27 chr6 6568281 6568391 -182711163 + L2 LINE L2 2967 3079 -234 217 227 27 13 chr6 6569039 6569114 -182710440 + (TTATA)n Simple_repeat Simple_repeat 5 80 0 227 164 16 49 chr6 6569170 6569231 -182710323 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 454 188 134 27 chr6 6569311 6569423 -182710131 + MER63 DNA MER1_type 1 750 -312 294 267 0 13 chr6 6569409 6569484 -182710070 + MER63 DNA MER1_type 985 1058 -4 * 216 128 0 0 chr6 6569556 6569568 -182709986 + (A)n Simple_repeat Simple_repeat 1 12 -27 1697 159 6 49 chr6 6569568 6569895 -182709659 + AluSq SINE Alu 1 313 0 216 128 0 0 chr6 6569895 6569921 -182709633 + (A)n Simple_repeat Simple_repeat 11 39 0 180 356 27 0 chr6 6570780 6570853 -182708701 - L2 LINE L2 -31 3282 3208 375 242 134 13 chr6 6571207 6571356 -182708198 - MER104 DNA Tc2 -13 167 1 4246 158 154 30 chr6 6572377 6573659 -182705895 - pTR5 LTR ERV1 -8 2430 738 261 218 0 0 chr6 6574398 6574476 -182705078 + (CA)n Simple_repeat Simple_repeat 1 78 0 554 202 6 0 chr6 6574491 6574669 -182704885 + (CA)n Simple_repeat Simple_repeat 2 180 0 182 190 0 17 chr6 6574700 6574758 -182704796 + (CA)n Simple_repeat Simple_repeat 2 58 0 182 174 65 65 chr6 6574829 6574875 -182704679 + L2 LINE L2 3219 3264 -8 249 224 0 30 chr6 6575233 6575300 -182704254 + (TATATG)n Simple_repeat Simple_repeat 6 70 0 245 210 16 0 chr6 6575301 6575363 -182704191 - L1MC4 LINE L1 -1340 6702 6640 342 0 0 0 chr6 6575909 6575947 -182703607 + (CA)n Simple_repeat Simple_repeat 2 39 0 213 65 0 0 chr6 6577919 6577950 -182701604 + (TA)n Simple_repeat Simple_repeat 1 31 0 210 71 0 0 chr6 6579118 6579146 -182700408 + (CCCCCT)n Simple_repeat Simple_repeat 2 29 0 395 137 14 0 chr6 6579956 6580029 -182699525 + GA-rich Low_complexity Low_complexity 3 76 0 287 250 10 87 chr6 6580444 6580501 -182699053 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6580501 6580530 -182699024 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 287 250 10 87 chr6 6580530 6580576 -182698978 + MER21B LTR ERV1 59 107 -756 2694 235 111 26 chr6 6580576 6581342 -182698212 + MER21B LTR ERV1 22 852 -11 883 177 58 22 chr6 6581465 6581691 -182697863 + MER33 DNA MER1_type 9 242 -82 2623 138 52 54 chr6 6581707 6581726 -182697828 - L1MB3 LINE L1 -17 6166 6148 2122 106 0 0 chr6 6581726 6582019 -182697535 - AluSg SINE Alu -17 293 1 2623 138 52 54 chr6 6582019 6582480 -182697074 - L1MB3 LINE L1 -35 6148 5617 2167 110 3 0 chr6 6582480 6582789 -182696765 - AluSg SINE Alu 0 310 1 2623 138 52 54 chr6 6582789 6583060 -182696494 - L1MB3 LINE L1 -566 5617 5347 573 106 0 43 chr6 6583061 6583155 -182696399 + MER33 DNA MER1_type 273 362 -1 2119 110 3 3 chr6 6583577 6583877 -182695677 + AluSq SINE Alu 1 300 -13 2070 119 10 3 chr6 6584326 6584637 -182694917 - AluSq SINE Alu 0 313 1 2187 105 0 3 chr6 6584908 6585221 -182694333 + AluSx SINE Alu 1 312 0 218 300 27 55 chr6 6585383 6585493 -182694061 + MIR SINE MIR 98 204 -58 1617 163 7 14 chr6 6585758 6586053 -182693501 + AluJo SINE Alu 1 293 -19 303 206 98 10 chr6 6587379 6587481 -182692073 + MER53 DNA DNA 10 120 -69 1580 149 7 55 chr6 6587732 6588021 -182691533 + AluJb SINE Alu 3 277 -35 233 268 0 18 chr6 6588024 6588080 -182691474 + GA-rich Low_complexity Low_complexity 4 58 0 312 66 33 33 chr6 6588080 6588141 -182691413 + (GAAA)n Simple_repeat Simple_repeat 4 64 0 336 308 116 27 chr6 6589127 6589273 -182690281 - MIR3 SINE MIR -34 174 16 1180 275 116 27 chr6 6589488 6590084 -182689470 + L2 LINE L2 2188 2836 -478 688 274 128 45 chr6 6590087 6590605 -182688949 - L1MB3 LINE L1 -1005 5141 4559 642 265 157 13 chr6 6590611 6590988 -182688566 - L1MB3 LINE L1 -2196 3950 3520 1163 168 10 14 chr6 6590989 6591198 -182688356 - AluJo SINE Alu -17 295 88 446 286 70 27 chr6 6591203 6591759 -182687795 - L1MB3 LINE L1 -2630 3516 2937 320 302 71 8 chr6 6591891 6592017 -182687537 - L1MEd LINE L1 -5394 725 592 4252 136 18 44 chr6 6592463 6593258 -182686296 - L1MC1 LINE L1 0 6333 5560 198 0 0 0 chr6 6594338 6594360 -182685194 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1784 87 77 45 chr6 6594505 6594792 -182684762 - AluSq SINE Alu -17 296 1 1847 83 8 30 chr6 6595202 6595467 -182684087 + AluSg SINE Alu 42 300 -10 373 239 142 7 chr6 6595548 6595703 -182683851 + L1ME4a LINE L1 5943 6118 -3 1042 109 0 0 chr6 6596047 6596194 -182683360 - AluSq/x SINE Alu -165 148 2 192 363 134 17 chr6 6598273 6598452 -182681102 + L2 LINE L2 1063 1262 -2052 627 255 98 21 chr6 6598706 6599032 -182680522 + HAL1 LINE L1 871 1221 -1286 227 280 0 0 chr6 6599032 6599082 -182680472 - MER45A DNA AcHobo -4 174 125 2010 115 0 3 chr6 6599094 6599380 -182680174 + AluSc SINE Alu 1 285 -24 1011 127 66 71 chr6 6599398 6599610 -182679944 + AluJo SINE Alu 20 230 -82 1188 168 172 27 chr6 6599619 6599881 -182679673 - AluJo SINE Alu -2 300 1 320 140 60 0 chr6 6599942 6599992 -182679562 + AluJo SINE Alu 235 287 -15 299 253 38 0 chr6 6599965 6600044 -182679510 - MER45A DNA AcHobo -35 143 62 * 898 177 100 15 chr6 6600234 6600505 -182679049 + MER33 DNA MER1_type 14 307 -17 354 257 61 20 chr6 6600642 6600790 -182678764 - LTR33A LTR ERVL -14 509 356 233 321 85 0 chr6 6601006 6601112 -182678442 - LTR33A LTR ERVL -350 173 59 710 261 120 53 chr6 6601162 6601728 -182677826 + HAL1 LINE L1 1884 2487 -20 427 276 44 108 chr6 6602225 6602569 -182676985 + MLT1I LTR MaLR 81 402 -7 1266 222 68 31 chr6 6602775 6603127 -182676427 - MLT1A1 LTR MaLR 0 365 1 833 67 0 0 chr6 6603464 6603569 -182675985 + AluY SINE Alu 196 300 -11 2339 103 3 0 chr6 6603847 6604157 -182675397 + AluSx SINE Alu 1 311 -1 1602 97 162 16 chr6 6604159 6604406 -182675148 + AluSx SINE Alu 2 284 -18 196 42 0 0 chr6 6604406 6604430 -182675124 + (CAAA)n Simple_repeat Simple_repeat 2 92 0 487 306 44 14 chr6 6606172 6606397 -182673157 + MLT1J LTR MaLR 311 596 -19 233 127 28 70 chr6 6608002 6608073 -182671481 - L1MD1 LINE L1 -1 6241 6174 1802 226 108 26 chr6 6608185 6608760 -182670794 - L1MD2 LINE L1 -59 6300 5679 5484 244 90 15 chr6 6608775 6610491 -182669063 - L1MD2 LINE L1 -743 5403 3541 1748 252 23 50 chr6 6610491 6611066 -182668488 + MER68 LTR ERV1 2 560 -2 5484 244 90 15 chr6 6611066 6611170 -182668384 - L1MD2 LINE L1 -2605 3541 3446 2464 193 69 30 chr6 6611170 6611760 -182667794 - Tigger7 DNA MER2_type 0 2487 1 2826 239 19 35 chr6 6611760 6611973 -182667581 - L1MD2 LINE L1 -2699 3447 3232 1837 93 0 0 chr6 6611973 6612210 -182667344 - AluY SINE Alu 0 311 75 2826 239 19 35 chr6 6612210 6612729 -182666825 - L1MD2 LINE L1 -2914 3232 2706 1874 147 158 13 chr6 6612729 6613103 -182666451 - MSTA LTR MaLR 0 428 1 9511 124 36 39 chr6 6613103 6614686 -182664868 - MSTA-int LTR MaLR 0 1580 3 1966 144 137 13 chr6 6614688 6615069 -182664485 - MSTA LTR MaLR 0 428 1 2826 239 19 35 chr6 6615069 6615264 -182664290 - L1MD2 LINE L1 -3440 2706 2530 245 273 133 62 chr6 6615265 6615393 -182664161 - MIR SINE MIR -106 156 20 26 0 0 0 chr6 6615977 6616003 -182663551 + AT_rich Low_complexity Low_complexity 1 26 0 539 213 269 0 chr6 6617069 6617229 -182662325 + MER3 DNA MER1_type 1 203 -6 492 202 15 3 chr6 6617257 6617394 -182662160 - MER5A DNA MER1_type -14 175 3 1193 266 113 15 chr6 6617535 6617994 -182661560 + MER69 DNA AcHobo 214 717 -1809 1318 151 106 8 chr6 6618016 6618261 -182661293 - L1PA16 LINE L1 -9 6157 5889 1163 191 131 76 chr6 6618277 6618805 -182660749 + MER69 DNA AcHobo 1969 2525 -1 388 248 16 33 chr6 6618827 6618948 -182660606 + L2 LINE L2 3195 3313 0 1897 132 4 0 chr6 6620954 6621226 -182658328 + AluSc SINE Alu 37 309 0 390 42 0 0 chr6 6621226 6621274 -182658280 + (GGAA)n Simple_repeat Simple_repeat 1 48 0 5469 180 41 27 chr6 6621854 6623972 -182655582 - L1MB4 LINE L1 -37 6143 4015 455 310 104 30 chr6 6624091 6624359 -182655195 + L1MEc LINE L1 245 532 -6075 302 235 98 15 chr6 6624771 6624903 -182654651 + L1MEc LINE L1 999 1141 -5466 * 1741 271 102 13 chr6 6624892 6625726 -182653828 + L1MEc LINE L1 950 2077 -4481 1169 251 44 17 chr6 6625932 6626227 -182653327 + LTR40a LTR ERVL 217 519 0 296 299 31 16 chr6 6626231 6626358 -182653196 + L1MEc LINE L1 2076 2204 -4403 310 156 45 58 chr6 6626358 6626512 -182653042 + (TTATA)n Simple_repeat Simple_repeat 3 154 0 904 190 85 63 chr6 6626529 6626845 -182652709 - MER33 DNA MER1_type 0 324 2 402 235 66 7 chr6 6626845 6626981 -182652573 + L1MEc LINE L1 2270 2413 -4194 514 255 85 7 chr6 6627199 6627352 -182652202 + MIR SINE MIR 2 166 -96 468 208 0 0 chr6 6628110 6628216 -182651338 + (TA)n Simple_repeat Simple_repeat 1 106 0 726 243 0 38 chr6 6628468 6628653 -182650901 + AluJo SINE Alu 122 299 -13 320 207 76 27 chr6 6629559 6629677 -182649877 + L1ME4a LINE L1 5752 5874 -247 258 32 0 0 chr6 6629704 6629735 -182649819 + (TG)n Simple_repeat Simple_repeat 2 32 0 248 275 25 0 chr6 6629735 6629815 -182649739 + L1ME4a LINE L1 5973 6054 -67 231 229 16 16 chr6 6630164 6630225 -182649329 + GA-rich Low_complexity Low_complexity 4 64 0 2077 104 104 21 chr6 6630723 6631059 -182648495 - THE1B LTR MaLR 0 364 1 1537 179 23 29 chr6 6631130 6631438 -182648116 + AluJo SINE Alu 5 310 -2 242 297 158 0 chr6 6632341 6632442 -182647112 + MIR SINE MIR 35 151 -111 945 193 60 32 chr6 6632445 6632694 -182646860 - MER46C DNA MER2_type 0 338 83 317 232 0 49 chr6 6632813 6632895 -182646659 + MIR SINE MIR 155 232 -30 25 0 0 0 chr6 6633772 6633797 -182645757 + AT_rich Low_complexity Low_complexity 1 25 0 374 264 116 8 chr6 6634062 6634183 -182645371 + L2 LINE L2 3180 3313 0 3498 116 43 10 chr6 6634572 6635080 -182644474 - MER1A DNA MER1_type 0 527 3 247 67 67 0 chr6 6635545 6635590 -182643964 + CT-rich Low_complexity Low_complexity 4 51 0 2312 115 0 0 chr6 6635850 6636145 -182643409 + AluSx SINE Alu 5 299 -13 790 185 25 0 chr6 6636693 6636855 -182642699 + MER5A DNA MER1_type 1 166 -23 355 250 72 33 chr6 6636734 6636886 -182642668 - MER5A DNA MER1_type -31 158 1 * 1991 156 23 25 chr6 6637047 6637400 -182642154 + MLT1A1 LTR MaLR 13 364 -1 843 181 32 27 chr6 6637812 6638000 -182641554 - MER5A DNA MER1_type 0 189 1 1622 138 98 41 chr6 6640035 6640314 -182639240 - MLT1B LTR MaLR 0 390 89 2250 116 13 0 chr6 6640314 6640617 -182638937 + AluSp SINE Alu 1 307 -6 1622 138 98 41 chr6 6640617 6640654 -182638900 - MLT1B LTR MaLR -301 89 56 583 175 0 10 chr6 6640654 6640751 -182638803 - Tigger7 DNA MER2_type -2 2485 2390 1167 218 75 0 chr6 6640752 6640991 -182638563 - Tigger7 DNA MER2_type -468 265 9 362 143 18 0 chr6 6640998 6641054 -182638500 - MLT1B LTR MaLR -330 60 4 346 178 11 67 chr6 6642063 6642153 -182637401 - MIR SINE MIR -112 150 66 1520 216 49 6 chr6 6643020 6643367 -182636187 + MLT1A1 LTR MaLR 1 362 -3 1816 186 132 13 chr6 6643511 6643958 -182635596 - MLT1D LTR MaLR 0 505 6 212 204 161 21 chr6 6643963 6644056 -182635498 + MIR SINE MIR 140 245 -17 1346 199 69 22 chr6 6644713 6645030 -182634524 + MER58B DNA MER1_type 10 341 0 235 298 161 0 chr6 6645263 6645387 -182634167 - MIR SINE MIR -70 192 49 293 291 0 25 chr6 6645561 6645640 -182633914 + G-rich Low_complexity Low_complexity 1 77 0 636 192 21 21 chr6 6645644 6645956 -182633598 + GA-rich Low_complexity Low_complexity 1 312 0 181 313 35 56 chr6 6650170 6650314 -182629240 - MIR3 SINE MIR -3 205 65 2166 123 3 3 chr6 6650784 6651094 -182628460 + AluSx SINE Alu 3 312 0 2461 73 7 0 chr6 6651915 6652218 -182627336 + AluY SINE Alu 1 305 -6 736 284 46 17 chr6 6652251 6652490 -182627064 - Charlie8 DNA MER1_type -2171 246 1 1395 258 86 5 chr6 6652984 6653368 -182626186 - LTR16C LTR ERVL -6 485 71 1865 223 6 0 chr6 6653389 6653752 -182625802 - MLT1A1 LTR MaLR 0 365 1 1120 274 94 105 chr6 6653916 6654107 -182625447 + L1MEd LINE L1 453 645 -5885 207 0 0 0 chr6 6654107 6654130 -182625424 + (CA)n Simple_repeat Simple_repeat 2 24 0 1120 274 94 105 chr6 6654130 6654305 -182625249 + L1MEd LINE L1 645 820 -5710 23 54 0 0 chr6 6654305 6654342 -182625212 + AT_rich Low_complexity Low_complexity 1 37 0 1120 274 94 105 chr6 6654342 6655155 -182624399 + L1MEd LINE L1 820 1656 -4874 834 249 63 103 chr6 6655673 6656130 -182623424 - MLT1F LTR MaLR 0 542 104 3868 143 67 45 chr6 6656131 6657447 -182622107 - pTR5 LTR ERV1 0 2438 760 376 222 145 0 chr6 6657447 6657564 -182621990 - MLT1F LTR MaLR -453 140 7 723 180 0 0 chr6 6657676 6657815 -182621739 + L1MB2 LINE L1 6033 6171 0 432 242 131 79 chr6 6657959 6658092 -182621462 + L1MEd LINE L1 2385 2510 -4030 2146 111 16 0 chr6 6658092 6658399 -182621155 + AluSx SINE Alu 1 312 0 432 242 131 79 chr6 6658399 6658517 -182621037 + L1MEd LINE L1 2510 2649 -3891 707 247 75 45 chr6 6658517 6658784 -182620770 + L1M4 LINE L1 4015 4289 -1857 356 269 61 19 chr6 6658826 6658987 -182620567 - L1MB5 LINE L1 -332 5842 5677 186 238 109 59 chr6 6660261 6660362 -182619192 + MER5C DNA MER1_type 90 195 -129 794 134 34 0 chr6 6660441 6660560 -182618994 - FLAM_C SINE Alu -19 124 2 644 277 107 12 chr6 6660569 6660822 -182618732 + L1MD2 LINE L1 6083 6359 0 441 291 68 0 chr6 6661827 6661975 -182617579 + MIR SINE MIR 105 262 0 239 278 33 33 chr6 6662183 6662273 -182617281 + L2 LINE L2 3203 3292 -21 8872 137 68 41 chr6 6662627 6664279 -182615275 - pTR5 LTR ERV1 0 2438 741 595 207 79 12 chr6 6665622 6665786 -182613768 + MER5B DNA MER1_type 1 175 -3 2101 113 7 0 chr6 6665914 6666214 -182613340 + AluSx SINE Alu 1 302 -10 695 196 0 23 chr6 6666222 6666355 -182613199 + FLAM_C SINE Alu 4 133 0 221 313 12 12 chr6 6666511 6666594 -182612960 - MIR SINE MIR -12 250 168 210 316 38 0 chr6 6667724 6667803 -182611751 + L2 LINE L2 3231 3312 -1 198 24 24 49 chr6 6668288 6668329 -182611225 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 2142 95 0 0 chr6 6668331 6668615 -182610939 - AluSx SINE Alu -28 284 1 233 71 0 0 chr6 6669854 6669882 -182609672 + MLT2C2 LTR ERVL 430 457 -7 315 209 27 0 chr6 6670288 6670398 -182609156 + GA-rich Low_complexity Low_complexity 2 114 0 854 227 39 0 chr6 6670618 6670821 -182608733 + L1MD2 LINE L1 6139 6349 -10 1069 184 23 14 chr6 6671973 6672190 -182607364 + MER20 DNA MER1_type 1 219 0 387 297 31 8 chr6 6673418 6673546 -182606008 + MIR SINE MIR 48 178 -84 511 250 275 18 chr6 6673557 6673837 -182605717 - LTR50 LTR ERVL -7 788 437 329 184 289 13 chr6 6673920 6674072 -182605482 - LTR50 LTR ERVL -581 214 21 235 231 62 31 chr6 6674089 6674154 -182605400 - L2 LINE L2 0 3272 3206 441 81 0 0 chr6 6674849 6674911 -182604643 + (GGATG)n Simple_repeat Simple_repeat 2 63 0 186 391 0 0 chr6 6676163 6676232 -182603322 + L2 LINE L2 3188 3256 -16 279 272 133 89 chr6 6676958 6677138 -182602416 + MIR SINE MIR 32 219 -43 268 356 60 20 chr6 6677987 6678136 -182601418 + L2 LINE L2 3096 3250 -22 771 243 65 9 chr6 6678154 6678368 -182601186 - MIR SINE MIR -3 259 34 513 160 0 25 chr6 6678709 6678828 -182600726 + CT-rich Low_complexity Low_complexity 3 118 0 267 122 0 0 chr6 6678999 6679048 -182600506 + (TC)n Simple_repeat Simple_repeat 2 50 0 259 297 59 25 chr6 6679165 6679283 -182600271 + L2 LINE L2 3180 3301 -12 468 293 79 11 chr6 6680294 6680560 -182598994 + L1ME4a LINE L1 5732 6015 -106 440 215 8 108 chr6 6681190 6681226 -182598328 + MER5B DNA MER1_type 1 39 -139 1030 191 14 101 chr6 6681226 6681581 -182597973 + MER33 DNA MER1_type 1 324 0 440 215 8 108 chr6 6681581 6681674 -182597880 + MER5B DNA MER1_type 39 117 -61 317 215 177 13 chr6 6681740 6681819 -182597735 - MIR SINE MIR -115 147 56 1023 143 7 7 chr6 6681995 6682149 -182597405 + MER5A DNA MER1_type 1 154 -35 667 187 112 8 chr6 6682155 6682289 -182597265 - MER58B DNA MER1_type -5 336 189 398 151 0 0 chr6 6682354 6682427 -182597127 - MER58B DNA MER1_type -161 180 108 185 262 0 0 chr6 6682438 6682480 -182597074 + MER5A DNA MER1_type 148 189 0 212 259 68 91 chr6 6682689 6682913 -182596641 + MIR3 SINE MIR 1 216 -46 347 156 0 56 chr6 6683861 6683951 -182595603 - L1PA3 LINE L1 -1 6154 6070 834 148 55 39 chr6 6683970 6684152 -182595402 - L1PA11 LINE L1 -80 6094 5910 1386 168 24 108 chr6 6685657 6686027 -182593527 - MER44D DNA MER2_type 0 609 1 889 210 11 0 chr6 6686468 6686654 -182592900 - MER5A DNA MER1_type 0 189 2 916 279 30 4 chr6 6686654 6686891 -182592663 + MIR SINE MIR 8 250 -12 2346 65 3 7 chr6 6687479 6687785 -182591769 - AluY SINE Alu -6 305 1 1386 191 48 22 chr6 6688580 6688894 -182590660 + MER33 DNA MER1_type 3 324 0 955 223 30 0 chr6 6688903 6689100 -182590454 - MER3 DNA MER1_type -1 208 6 2136 36 0 0 chr6 6689132 6689380 -182590174 - L1PA3 LINE L1 0 6155 5908 2298 15 0 11 chr6 6689380 6689646 -182589908 + L1PA3 LINE L1 5622 5884 -271 1889 218 130 2 chr6 6689868 6690300 -182589254 - MLT1D LTR MaLR 0 505 19 864 154 0 0 chr6 6690750 6690893 -182588661 + FLAM_C SINE Alu 1 143 0 1463 176 29 13 chr6 6690912 6691219 -182588335 + AluJo SINE Alu 1 312 0 304 269 0 0 chr6 6692168 6692235 -182587319 - MER91A DNA MER1_type -1 195 129 216 319 21 21 chr6 6692647 6692741 -182586813 - MER91A DNA MER1_type -67 129 36 1143 87 0 25 chr6 6693540 6693701 -182585853 - L1MA9 LINE L1 -623 5689 5533 2247 159 80 9 chr6 6693712 6694139 -182585415 + L1MA9 LINE L1 5705 6161 -151 300 273 0 0 chr6 6694139 6694260 -182585294 + (CA)n Simple_repeat Simple_repeat 1 121 0 352 113 0 42 chr6 6694287 6694358 -182585196 + L1MA9 LINE L1 6245 6312 0 1528 145 67 28 chr6 6694716 6694998 -182584556 + AluJb SINE Alu 1 293 -19 187 107 0 0 chr6 6695305 6695333 -182584221 - L3b LINE CR1 -12 1571 1544 490 308 79 23 chr6 6695786 6696000 -182583554 - MIR SINE MIR -2 260 35 319 273 33 8 chr6 6696243 6696364 -182583190 - LTR67 LTR ERVL -1 556 433 212 309 53 11 chr6 6696533 6696627 -182582927 + MER91C DNA MER1_type 31 128 -12 417 267 99 0 chr6 6696695 6696796 -182582758 - MIR SINE MIR -144 118 8 3324 313 125 21 chr6 6696868 6698438 -182581116 + L2 LINE L2 670 2528 -785 420 20 0 0 chr6 6698438 6698487 -182581067 + (CA)n Simple_repeat Simple_repeat 1 49 0 3324 313 125 21 chr6 6698487 6699104 -182580450 + L2 LINE L2 2528 3079 -234 425 257 124 92 chr6 6699117 6699335 -182580219 - MIR SINE MIR -5 257 33 483 291 88 48 chr6 6699340 6699463 -182580091 + L2 LINE L2 3078 3195 -118 2438 146 3 3 chr6 6699463 6699827 -182579727 - THE1B LTR MaLR 0 364 1 483 291 88 48 chr6 6699827 6699930 -182579624 + L2 LINE L2 3195 3313 0 233 197 15 61 chr6 6700194 6700260 -182579294 + GA-rich Low_complexity Low_complexity 1 63 0 2015 96 7 0 chr6 6700815 6701087 -182578467 - AluSg SINE Alu -16 294 21 433 155 0 0 chr6 6701164 6701235 -182578319 - L1MA4A LINE L1 -43 6260 6190 2656 119 19 5 chr6 6701237 6701665 -182577889 - L1MA4A LINE L1 -184 6119 5686 2178 114 0 0 chr6 6702248 6702556 -182576998 + AluSx SINE Alu 1 308 -4 288 254 58 78 chr6 6703674 6703879 -182575675 - L3 LINE CR1 -163 1414 1214 1033 251 165 4 chr6 6704158 6704613 -182574941 + L2 LINE L2 2380 2907 -407 715 280 34 62 chr6 6704645 6704966 -182574588 + L2 LINE L2 2995 3306 -7 180 111 0 0 chr6 6706595 6706622 -182572932 + (GA)n Simple_repeat Simple_repeat 1 27 0 452 280 119 76 chr6 6707431 6707780 -182571774 - MLT1K LTR MaLR -17 571 197 2256 113 17 210 chr6 6707780 6708384 -182571170 + LTR45B LTR ERV1 3 489 0 452 280 119 76 chr6 6708384 6708481 -182571073 - MLT1K LTR MaLR -391 197 106 717 261 99 9 chr6 6708567 6708789 -182570765 + MIR SINE MIR 21 262 0 2301 87 0 13 chr6 6709109 6709418 -182570136 + AluSx SINE Alu 1 305 -7 349 282 100 36 chr6 6710248 6710468 -182569086 - MIR SINE MIR -9 253 20 194 352 45 11 chr6 6710764 6710852 -182568702 - L2 LINE L2 -1 3312 3222 280 272 51 4 chr6 6712438 6712535 -182567019 - MER91A DNA MER1_type -2 188 90 523 218 18 9 chr6 6712565 6712675 -182566879 - MER91A DNA MER1_type -81 115 5 408 265 86 124 chr6 6713058 6713315 -182566239 + L2 LINE L2 3023 3269 -3 1663 189 66 76 chr6 6713349 6713821 -182565733 - MLT1C LTR MaLR 0 467 1 249 338 144 7 chr6 6713843 6713982 -182565572 - MIR SINE MIR -71 191 34 186 276 236 24 chr6 6713999 6714122 -182565432 + MIR SINE MIR 10 158 -104 556 259 37 12 chr6 6714763 6714924 -182564630 + MIR SINE MIR 22 186 -63 644 111 96 15 chr6 6715112 6715247 -182564307 + L1MB3 LINE L1 6034 6179 -4 1961 106 7 0 chr6 6715523 6715832 -182563722 - AluSx SINE Alu 0 311 1 433 60 15 0 chr6 6715848 6715915 -182563639 + L1MB2 LINE L1 6103 6170 -1 322 305 188 8 chr6 6717180 6717308 -182562246 + MIR3 SINE MIR 51 201 -7 299 231 15 0 chr6 6718553 6718618 -182560936 + MER63 DNA MER1_type 685 750 -311 34984 84 7 10 chr6 6718635 6723420 -182556134 + L1P LINE L1 11 4780 -1366 237 277 0 15 chr6 6723422 6723487 -182556067 + L2 LINE L2 3205 3268 -4 1354 175 34 14 chr6 6723943 6724235 -182555319 - MER33 DNA MER1_type -24 300 3 523 290 45 57 chr6 6724270 6724504 -182555050 - MIR SINE MIR 0 262 37 2232 54 7 10 chr6 6724614 6724908 -182554646 + AluY SINE Alu 1 293 -18 270 0 0 0 chr6 6724950 6724980 -182554574 + (TG)n Simple_repeat Simple_repeat 2 31 0 1963 120 0 0 chr6 6724980 6725263 -182554291 - AluSx SINE Alu -29 283 1 971 256 127 9 chr6 6725806 6726122 -182553432 - MLT1J LTR MaLR -4 507 155 304 231 33 165 chr6 6726135 6726226 -182553328 - MLT1E LTR MaLR -244 410 250 314 203 17 0 chr6 6726297 6726356 -182553198 + LTR16B LTR ERVL 1 60 -404 635 152 7 80 chr6 6726358 6726496 -182553058 + FRAM SINE Alu 27 154 -22 2067 117 0 0 chr6 6726514 6726812 -182552742 + AluSc SINE Alu 2 299 -10 2269 81 3 0 chr6 6728054 6728350 -182551204 - AluSp SINE Alu -16 297 1 428 291 126 0 chr6 6728784 6728935 -182550619 + MIR SINE MIR 92 261 -1 246 156 0 0 chr6 6729031 6729076 -182550478 + (CA)n Simple_repeat Simple_repeat 2 46 0 301 302 51 51 chr6 6729906 6730121 -182549433 - L2 LINE L2 -373 2941 2727 25 31 0 0 chr6 6730788 6730820 -182548734 + AT_rich Low_complexity Low_complexity 1 32 0 1278 232 38 55 chr6 6731290 6731742 -182547812 - HsTC2 DNA Tc2 0 1900 1281 516 340 21 5 chr6 6732153 6732341 -182547213 + MIR SINE MIR 20 210 -52 196 330 70 9 chr6 6732988 6733103 -182546451 + MIR SINE MIR 69 190 -72 2502 56 0 0 chr6 6733275 6733578 -182545976 + AluSq SINE Alu 1 303 -10 527 211 24 0 chr6 6733594 6733760 -182545794 + CT-rich Low_complexity Low_complexity 1 170 0 272 200 0 0 chr6 6734490 6734540 -182545014 - MER103 DNA DNA -53 113 64 4375 206 109 8 chr6 6734845 6735824 -182543730 + Tigger6a DNA MER2_type 1 1078 -5 2231 163 10 3 chr6 6736719 6737106 -182542448 - MLT1B LTR MaLR 0 390 1 251 348 54 49 chr6 6737183 6737367 -182542187 + L2 LINE L2 2175 2359 -955 3994 138 19 32 chr6 6738144 6738868 -182540686 - L1PA16 LINE L1 -17 6149 5435 189 0 0 0 chr6 6739019 6739040 -182540514 + (CA)n Simple_repeat Simple_repeat 2 22 0 323 282 12 0 chr6 6739708 6739793 -182539761 + (TG)n Simple_repeat Simple_repeat 1 86 0 724 133 106 72 chr6 6740531 6740711 -182538843 - MLT1C LTR MaLR -279 188 3 4002 322 40 26 chr6 6740715 6742165 -182537389 + HERV16 LTR ERVL 1854 3323 -1673 2167 124 0 0 chr6 6743829 6744136 -182535418 + AluSg SINE Alu 1 307 -3 4422 136 58 22 chr6 6744950 6745706 -182533848 - LTR1 LTR ERV1 -2 783 1 304 265 20 61 chr6 6746160 6746258 -182533296 - MER5A DNA MER1_type -56 133 40 283 274 0 0 chr6 6747423 6747496 -182532058 + MER116 DNA Mariner 8 80 0 448 200 89 0 chr6 6747700 6747790 -182531764 + MER5A DNA MER1_type 9 106 -83 389 185 43 0 chr6 6748031 6748123 -182531431 - MLT1F LTR MaLR 0 542 447 * 637 230 0 15 chr6 6748094 6748229 -182531325 - MLT1E LTR MaLR -460 133 1 568 250 59 13 chr6 6748372 6748524 -182531030 + MER5B DNA MER1_type 17 175 -3 2112 98 13 10 chr6 6748532 6748837 -182530717 + AluSx SINE Alu 1 306 -6 211 170 0 43 chr6 6749105 6749152 -182530402 + GA-rich Low_complexity Low_complexity 4 48 0 2403 161 22 18 chr6 6749160 6749600 -182529954 + L1MC1 LINE L1 5882 6324 -4 1603 170 25 3 chr6 6749600 6749883 -182529671 - AluJb SINE Alu -22 290 2 23 0 0 0 chr6 6749888 6749911 -182529643 + AT_rich Low_complexity Low_complexity 1 23 0 388 296 170 6 chr6 6750033 6750192 -182529362 - MIR3 SINE MIR -6 202 18 821 144 24 0 chr6 6751908 6752033 -182527521 + FLAM_C SINE Alu 1 128 -15 2733 7 0 7 chr6 6752904 6753214 -182526340 + AluY SINE Alu 1 308 -3 251 205 33 131 chr6 6753624 6753746 -182525808 + MIR3 SINE MIR 51 160 -48 215 280 0 0 chr6 6753967 6754017 -182525537 + MIR3 SINE MIR 153 202 -6 2015 132 7 13 chr6 6754501 6754811 -182524743 + AluSx SINE Alu 1 308 -4 443 311 86 5 chr6 6755616 6755838 -182523716 - MLT1L LTR MaLR -1 614 375 2295 218 51 19 chr6 6755871 6756377 -182523177 + MER45B DNA AcHobo 1 526 -514 2208 116 13 3 chr6 6756377 6756687 -182522867 + AluSq SINE Alu 1 313 0 2295 218 51 19 chr6 6756687 6756707 -182522847 + MER45B DNA AcHobo 526 544 -496 793 209 0 7 chr6 6757293 6757446 -182522108 + FRAM SINE Alu 17 168 -8 24 32 0 0 chr6 6757446 6757477 -182522077 + AT_rich Low_complexity Low_complexity 1 31 0 202 273 68 11 chr6 6757958 6758046 -182521508 - MIR SINE MIR -97 111 19 1090 186 14 18 chr6 6758273 6758493 -182521061 - MER20 DNA MER1_type 0 219 1 357 244 33 0 chr6 6758637 6758727 -182520827 - MER92C-int LTR ERV1 -4163 2638 2546 2115 107 0 69 chr6 6758771 6759090 -182520464 + AluSx SINE Alu 1 297 -15 251 299 0 31 chr6 6761323 6761420 -182518134 - MER92C-int LTR ERV1 -4770 166 73 1281 251 72 55 chr6 6761522 6761907 -182517647 - MER92C LTR ERV1 -2 552 154 1912 159 59 14 chr6 6761907 6762278 -182517276 - MLT1B LTR MaLR -2 388 1 1281 251 72 55 chr6 6762278 6762435 -182517119 - MER92C LTR ERV1 -400 154 1 1107 159 68 19 chr6 6764381 6764588 -182514966 + AluJo SINE Alu 85 301 -11 225 0 0 0 chr6 6765440 6765465 -182514089 + (A)n Simple_repeat Simple_repeat 1 25 0 1132 136 16 0 chr6 6766237 6766421 -182513133 + L1MA4 LINE L1 6107 6293 -7 2828 7 0 0 chr6 6766440 6766738 -182512816 + AluYa5 SINE Alu 1 298 -13 207 0 0 0 chr6 6766738 6766761 -182512793 + (TA)n Simple_repeat Simple_repeat 2 24 0 2140 101 3 11 chr6 6767032 6767318 -182512236 + AluSx SINE Alu 2 285 -27 857 185 143 21 chr6 6767843 6768032 -182511522 - MER20 DNA MER1_type 0 219 8 706 184 93 93 chr6 6768046 6768367 -182511187 + MER33 DNA MER1_type 1 321 -3 2092 105 10 3 chr6 6768947 6769241 -182510313 - AluSq SINE Alu -13 300 5 207 0 0 0 chr6 6769669 6769692 -182509862 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 307 324 9 0 chr6 6769932 6770037 -182509517 - MIR SINE MIR -67 141 36 473 285 41 60 chr6 6770990 6771085 -182508469 + L1ME3A LINE L1 5852 5947 -223 3125 186 20 8 chr6 6771085 6771691 -182507863 + L1MB3 LINE L1 5565 6177 -6 473 285 41 60 chr6 6771691 6771914 -182507640 + L1ME3A LINE L1 5947 6164 -6 190 302 139 12 chr6 6772769 6772855 -182506699 - MIR3 SINE MIR -48 160 64 1775 164 19 13 chr6 6772855 6773165 -182506389 + AluJo SINE Alu 1 312 0 280 275 80 22 chr6 6777240 6777378 -182502176 + MIR SINE MIR 117 262 0 205 291 236 6 chr6 6777497 6777662 -182501892 - L3 LINE CR1 -145 1432 1230 2024 138 0 7 chr6 6777671 6777967 -182501587 - AluY SINE Alu -17 294 1 2265 116 0 3 chr6 6777967 6778268 -182501286 - AluSx SINE Alu -12 300 1 412 296 108 35 chr6 6778367 6778738 -182500816 - L3 LINE CR1 -567 1010 613 345 318 139 9 chr6 6779813 6780036 -182499518 + MER112 DNA MER1_type 1 252 -8 404 278 56 0 chr6 6780054 6780180 -182499374 + HAL1 LINE L1 11 143 -2364 436 299 41 7 chr6 6780601 6780748 -182498806 + MLT1L LTR MaLR 428 579 -36 872 286 64 13 chr6 6780756 6781133 -182498421 + HAL1 LINE L1 1379 1774 -733 5082 114 23 13 chr6 6781935 6782706 -182496848 + MER4E LTR ERV1 1 779 0 5109 34 0 0 chr6 6783257 6783848 -182495706 - LTR10C LTR ERV1 0 591 1 4553 174 29 50 chr6 6787002 6788480 -182491074 + L1MA9 LINE L1 4721 6174 -181 357 24 0 0 chr6 6788480 6788522 -182491032 + (CA)n Simple_repeat Simple_repeat 1 42 0 4553 174 29 50 chr6 6788522 6788701 -182490853 + L1MA9 LINE L1 6174 6355 0 2417 233 49 60 chr6 6788709 6789712 -182489842 + L1ME3 LINE L1 5172 6161 -1 276 303 57 25 chr6 6789801 6789923 -182489631 + L2 LINE L2 3179 3304 -9 572 265 85 51 chr6 6792007 6792301 -182487253 + L2 LINE L2 3010 3313 0 573 246 0 9 chr6 6792420 6792534 -182487020 + MER81 DNA DNA 1 113 -1 404 297 76 51 chr6 6792620 6792896 -182486658 + LTR33 LTR ERVL 236 518 -3 259 292 153 0 chr6 6792951 6793088 -182486466 + MIR SINE MIR 97 254 -8 207 100 0 0 chr6 6793776 6793806 -182485748 + (CA)n Simple_repeat Simple_repeat 1 30 0 759 169 80 85 chr6 6793953 6794154 -182485400 + MLT1C LTR MaLR 53 252 -215 1294 96 0 0 chr6 6794154 6794321 -182485233 - L1PA13 LINE L1 -485 5678 5512 3179 120 2 0 chr6 6794325 6794792 -182484762 + L1PA13 LINE L1 5694 6161 -2 666 249 124 5 chr6 6794807 6795008 -182484546 + MLT1C LTR MaLR 278 502 -3 405 269 144 6 chr6 6795951 6796118 -182483436 + LTR33 LTR ERVL 1 190 -331 349 319 22 0 chr6 6796206 6796341 -182483213 + LTR33 LTR ERVL 339 476 -45 196 318 45 23 chr6 6796517 6796605 -182482949 + MIR SINE MIR 110 199 -63 780 160 15 0 chr6 6798078 6798209 -182481345 + FRAM SINE Alu 19 151 -25 22 56 0 0 chr6 6798337 6798373 -182481181 + AT_rich Low_complexity Low_complexity 1 36 0 210 182 23 0 chr6 6798432 6798476 -182481078 + T-rich Low_complexity Low_complexity 4 48 0 2150 129 0 13 chr6 6798482 6798791 -182480763 - AluSx SINE Alu -7 305 1 202 245 19 19 chr6 6799661 6799714 -182479840 + L2 LINE L2 3214 3266 -6 669 174 174 6 chr6 6799827 6799988 -182479566 - MER5A DNA MER1_type 0 189 2 25 0 0 0 chr6 6800055 6800080 -182479474 + AT_rich Low_complexity Low_complexity 1 25 0 323 94 0 19 chr6 6803722 6803775 -182475779 + (TTTC)n Simple_repeat Simple_repeat 1 52 0 1445 271 139 35 chr6 6804602 6805567 -182473987 + HAL1 LINE L1 812 1876 -631 277 277 0 42 chr6 6806008 6806127 -182473427 + HAL1b LINE L1 745 858 -490 180 200 0 0 chr6 6806232 6806272 -182473282 + GA-rich Low_complexity Low_complexity 4 43 0 352 238 59 10 chr6 6806335 6806436 -182473118 - LTR67 LTR ERVL -3 554 449 440 310 50 54 chr6 6806716 6806977 -182472577 - LTR67 LTR ERVL -296 261 2 22 0 0 0 chr6 6807213 6807235 -182472319 + AT_rich Low_complexity Low_complexity 1 22 0 460 225 11 0 chr6 6807830 6807919 -182471635 - L2 LINE L2 0 3272 3183 327 240 101 78 chr6 6807945 6808162 -182471392 + MIR SINE MIR 3 224 -38 236 357 35 28 chr6 6808235 6808378 -182471176 - L2 LINE L2 -180 3092 2949 423 305 135 9 chr6 6809627 6809945 -182469609 - L2 LINE L2 -1088 2226 1869 220 221 221 18 chr6 6810003 6810116 -182469438 - MIR SINE MIR -49 213 78 357 269 50 0 chr6 6810970 6811089 -182468465 + L1ME LINE L1 5619 5743 -378 566 75 12 12 chr6 6811089 6811169 -182468385 - MADE1 DNA Mariner 0 80 1 561 325 30 26 chr6 6811244 6811512 -182468042 - L1MC/D LINE L1 -2188 5689 5421 746 124 0 0 chr6 6811540 6811645 -182467909 + AluJb SINE Alu 9 113 -199 889 124 12 0 chr6 6811645 6811806 -182467748 + (GAAA)n Simple_repeat Simple_repeat 1 163 0 329 317 0 0 chr6 6812272 6812414 -182467140 - L1MC/D LINE L1 -1333 4882 4741 307 157 0 0 chr6 6813272 6813323 -182466231 - MLT-int LTR MaLR -1006 729 679 258 279 0 0 chr6 6813385 6813446 -182466108 - MLT1-int LTR MaLR -487 884 824 * 2074 194 37 31 chr6 6813435 6813920 -182465634 - MLT1-int LTR MaLR -660 711 224 1901 212 107 1 chr6 6813933 6814613 -182464941 - L1MEc LINE L1 -3423 2792 2071 40 59 0 0 chr6 6814671 6814739 -182464815 + AT_rich Low_complexity Low_complexity 1 68 0 875 258 65 108 chr6 6814815 6815295 -182464259 - LTR40b LTR ERVL 0 462 4 1087 238 34 3 chr6 6815298 6815635 -182463919 - HERVL40 LTR ERVL 0 5530 2784 270 330 45 17 chr6 6815504 6815680 -182463874 - MER89-int LTR ERV1 -291 6510 6330 * 256 275 78 60 chr6 6815609 6815892 -182463662 - HERVL40 LTR ERVL -256 2781 2740 * 513 263 51 110 chr6 6816059 6816413 -182463141 - HERVL40 LTR ERVL -328 2709 2377 2175 240 79 3 chr6 6816566 6817146 -182462408 - HERVL40 LTR ERVL -874 4656 1844 753 303 5 10 chr6 6817162 6817370 -182462184 - HERVL40 LTR ERVL -2159 3371 3165 2085 139 3 0 chr6 6819459 6819760 -182459794 + AluSq SINE Alu 2 303 -10 192 273 74 33 chr6 6821511 6821632 -182457922 + MER5A DNA MER1_type 43 168 -21 2107 114 29 0 chr6 6821915 6822195 -182457359 + AluSc SINE Alu 1 288 -21 416 332 44 22 chr6 6823992 6824263 -182455291 - L2 LINE L2 -191 3081 2805 2676 70 11 8 chr6 6824385 6824740 -182454814 + L1PA11 LINE L1 5819 6174 0 2371 89 3 3 chr6 6824997 6825300 -182454254 - AluSq SINE Alu -10 303 1 1427 140 91 7 chr6 6825849 6826134 -182453420 + L1MB2 LINE L1 5771 6079 -92 304 249 6 6 chr6 6826425 6826602 -182452952 + (CA)n Simple_repeat Simple_repeat 1 177 0 364 290 50 40 chr6 6826917 6827117 -182452437 - MIR SINE MIR -41 221 20 1741 60 5 0 chr6 6827536 6827751 -182451803 - L1PA5 LINE L1 -164 5990 5775 1049 52 0 15 chr6 6827751 6827885 -182451669 + L1PA5 LINE L1 6021 6154 0 1638 202 0 3 chr6 6828547 6828829 -182450725 + AluJb SINE Alu 1 281 -31 243 0 0 0 chr6 6828834 6828861 -182450693 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 584 245 130 37 chr6 6829273 6829571 -182449983 - LTR16A1 LTR ERVL -2 455 155 253 232 0 0 chr6 6829781 6829837 -182449717 + MIR SINE MIR 129 184 -78 595 283 123 41 chr6 6831556 6832458 -182447096 + L1ME3A LINE L1 4562 5546 -747 386 241 208 70 chr6 6832626 6832996 -182446558 + MLT1H LTR MaLR 129 549 0 585 322 130 25 chr6 6833168 6833491 -182446063 + MLT1L LTR MaLR 215 571 -44 346 386 40 18 chr6 6833558 6833849 -182445705 + L1ME3A LINE L1 5655 5950 -220 594 229 8 0 chr6 6834031 6834153 -182445401 - FLAM_C SINE Alu -19 124 2 1316 214 106 106 chr6 6834156 6834655 -182444899 - MLT1F1 LTR MaLR -43 524 1 288 377 41 0 chr6 6837108 6837254 -182442300 + L3 LINE CR1 890 1041 -536 436 235 182 0 chr6 6837467 6837599 -182441955 + L3 LINE CR1 1049 1204 -373 399 311 82 25 chr6 6837712 6837956 -182441598 + L1ME LINE L1 5405 5662 -459 203 179 0 0 chr6 6837991 6838030 -182441524 + A-rich Low_complexity Low_complexity 1 39 0 447 338 64 0 chr6 6838074 6838293 -182441261 - MIR SINE MIR -7 255 23 219 225 62 25 chr6 6838412 6838492 -182441062 - L3 LINE CR1 -1377 200 118 243 0 0 0 chr6 6838680 6838707 -182440847 + (A)n Simple_repeat Simple_repeat 1 27 0 2042 89 64 11 chr6 6840612 6840759 -182438795 - AluSq SINE Alu -17 296 158 2419 96 0 0 chr6 6840759 6841060 -182438494 - AluSg SINE Alu -9 301 1 2042 89 64 11 chr6 6841060 6841193 -182438361 - AluSq SINE Alu -155 158 1 21 0 0 0 chr6 6841233 6841254 -182438300 + AT_rich Low_complexity Low_complexity 1 21 0 509 83 0 0 chr6 6841510 6841582 -182437972 - AluS SINE Alu -238 74 3 21 0 0 0 chr6 6841755 6841776 -182437778 + AT_rich Low_complexity Low_complexity 1 21 0 1041 134 0 0 chr6 6841776 6841925 -182437629 - AluJo SINE Alu -30 282 134 296 100 0 20 chr6 6842007 6842057 -182437497 + (TTCC)n Simple_repeat Simple_repeat 2 50 0 1326 215 39 16 chr6 6842199 6842511 -182437043 + MER33 DNA MER1_type 6 324 0 594 236 121 0 chr6 6844250 6844432 -182435122 + MIR SINE MIR 33 236 -26 198 279 63 0 chr6 6844513 6844592 -182434962 + MER5A DNA MER1_type 33 116 -73 223 278 56 0 chr6 6845252 6845342 -182434212 - L2 LINE L2 -2 3311 3217 536 250 71 95 chr6 6845538 6845795 -182433759 + L2 LINE L2 2830 3092 -221 1230 202 73 35 chr6 6845795 6846082 -182433472 - AluJb SINE Alu -3 299 2 2388 105 0 6 chr6 6846086 6846400 -182433154 - AluSx SINE Alu 0 312 1 536 250 71 95 chr6 6846400 6846413 -182433141 + L2 LINE L2 3095 3107 -206 665 144 127 0 chr6 6846413 6846531 -182433023 - AluJo SINE Alu -169 133 1 536 250 71 95 chr6 6846531 6846750 -182432804 + L2 LINE L2 3107 3313 0 2078 105 10 10 chr6 6847048 6847342 -182432212 - AluSx SINE Alu -18 294 1 213 200 71 14 chr6 6848192 6848262 -182431292 + MIR SINE MIR 38 111 -97 407 200 14 117 chr6 6848297 6848339 -182431215 + L2 LINE L2 3183 3228 -85 2206 133 0 13 chr6 6848339 6848656 -182430898 - AluSq SINE Alu 0 313 1 407 200 14 117 chr6 6848656 6848758 -182430796 + L2 LINE L2 3228 3312 -1 830 201 12 6 chr6 6848963 6849127 -182430427 - MER58B DNA MER1_type 0 341 177 1273 203 8 4 chr6 6849127 6849364 -182430190 - MER8 DNA MER2_type 0 239 2 591 281 77 108 chr6 6850354 6850431 -182429123 - MLT1K LTR MaLR 0 588 510 653 178 31 8 chr6 6850431 6850560 -182428994 + FLAM_C SINE Alu 2 133 0 591 281 77 108 chr6 6850560 6850952 -182428602 - MLT1K LTR MaLR -78 510 134 2327 90 0 3 chr6 6851261 6851561 -182427993 - AluSc SINE Alu -10 299 1 1588 105 5 0 chr6 6851911 6852121 -182427433 + AluSg/x SINE Alu 83 293 -17 633 177 18 0 chr6 6852140 6852253 -182427301 - FRAM SINE Alu -18 158 44 183 352 148 0 chr6 6852259 6852401 -182427153 + L2 LINE L2 3027 3189 -83 2008 170 0 0 chr6 6852679 6852991 -182426563 + AluSx SINE Alu 1 312 0 563 309 65 40 chr6 6853346 6853776 -182425778 + L1ME LINE L1 5276 5716 -405 979 270 93 0 chr6 6854259 6854537 -182425017 - MER115 DNA AcHobo -385 308 5 1911 107 0 84 chr6 6854649 6855004 -182424550 - AluSx SINE Alu 0 329 1 2034 108 25 14 chr6 6855004 6855290 -182424264 - AluSx SINE Alu -23 289 1 21 36 0 0 chr6 6856290 6856318 -182423236 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 6856742 6856765 -182422789 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 523 249 30 75 chr6 6857040 6857241 -182422313 + MER112 DNA MER1_type 52 243 -17 2068 115 20 0 chr6 6857243 6857596 -182421958 - AluSx SINE Alu 0 359 1 271 218 90 13 chr6 6858023 6858101 -182421453 + LTR33A LTR ERVL 440 523 0 1904 129 0 0 chr6 6858391 6858646 -182420908 - AluSx SINE Alu -56 256 2 418 210 25 4 chr6 6859061 6859180 -182420374 + MER5A DNA MER1_type 24 186 -3 272 327 80 43 chr6 6859267 6859429 -182420125 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 6859634 6859808 -182419746 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 6860341 6860422 -182419132 + GA-rich Low_complexity Low_complexity 4 83 0 951 143 0 0 chr6 6862139 6862272 -182417282 - FLAM_C SINE Alu 0 133 1 6268 155 55 89 chr6 6862527 6864158 -182415396 - L1MC3 LINE L1 0 7785 6211 276 186 43 0 chr6 6864271 6864341 -182415213 + CT-rich Low_complexity Low_complexity 1 73 0 711 112 0 0 chr6 6864343 6864450 -182415104 + (TTCC)n Simple_repeat Simple_repeat 1 107 0 495 208 0 10 chr6 6865000 6865101 -182414453 - MER45A DNA AcHobo 0 178 79 300 273 0 0 chr6 6865321 6865387 -182414167 - L2 LINE L2 -2 3270 3205 277 218 24 48 chr6 6865562 6865686 -182413868 - LTR67 LTR ERVL -11 546 426 274 156 31 0 chr6 6865982 6866046 -182413508 + (TA)n Simple_repeat Simple_repeat 1 66 0 816 311 86 6 chr6 6866124 6866462 -182413092 + LTR16C LTR ERVL 125 489 -2 275 187 36 14 chr6 6866663 6866802 -182412752 + GA-rich Low_complexity Low_complexity 1 142 0 2339 98 3 0 chr6 6867778 6868074 -182411480 - AluSx SINE Alu -15 297 1 810 236 132 0 chr6 6869240 6869452 -182410102 + MIR SINE MIR 13 252 -10 404 367 67 11 chr6 6869452 6869722 -182409832 + L2 LINE L2 2365 2649 -665 573 320 13 53 chr6 6869768 6869821 -182409733 - MIR SINE MIR -1 261 207 2215 107 0 10 chr6 6869821 6870120 -182409434 + AluSg SINE Alu 1 296 -14 573 320 13 53 chr6 6870120 6870291 -182409263 - MIR SINE MIR -55 207 46 2001 170 0 0 chr6 6870433 6870745 -182408809 - AluJb SINE Alu 0 312 1 268 287 96 44 chr6 6870756 6870892 -182408662 + Charlie7 DNA MER1_type 142 284 -2328 276 100 0 0 chr6 6870984 6871024 -182408530 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 1290 224 110 107 chr6 6871051 6871932 -182407622 + Charlie7 DNA MER1_type 1485 2371 -241 2473 68 3 0 chr6 6871932 6872225 -182407329 - AluY SINE Alu -17 294 1 1290 224 110 107 chr6 6872225 6872332 -182407222 + Charlie7 DNA MER1_type 2371 2476 -136 21 36 0 0 chr6 6872429 6872457 -182407097 + AT_rich Low_complexity Low_complexity 1 28 0 1998 155 0 10 chr6 6872697 6873006 -182406548 - AluSx SINE Alu -6 306 1 1049 153 5 37 chr6 6873008 6873198 -182406356 - L1PA15 LINE L1 0 6165 5982 240 111 0 0 chr6 6873198 6873234 -182406320 + (TCCC)n Simple_repeat Simple_repeat 1 36 0 2077 104 17 0 chr6 6873234 6873523 -182406031 - AluY SINE Alu -1 310 17 1922 150 0 0 chr6 6873523 6873801 -182405753 - AluJb SINE Alu -32 280 1 211 277 31 0 chr6 6873962 6874027 -182405527 + CT-rich Low_complexity Low_complexity 1 67 0 416 224 51 10 chr6 6876222 6876320 -182403234 + MIR SINE MIR 87 188 -74 786 183 0 0 chr6 6876494 6876620 -182402934 + FLAM_C SINE Alu 1 126 -17 364 214 10 10 chr6 6876673 6876776 -182402778 + GA-rich Low_complexity Low_complexity 1 103 0 220 39 0 0 chr6 6876781 6876807 -182402747 + (GA)n Simple_repeat Simple_repeat 2 27 0 355 302 24 48 chr6 6878126 6878252 -182401302 + MIR3 SINE MIR 63 185 -23 345 24 0 0 chr6 6879243 6879285 -182400269 + (A)n Simple_repeat Simple_repeat 1 42 0 356 246 6 0 chr6 6879550 6879725 -182399829 + CT-rich Low_complexity Low_complexity 2 177 0 405 0 0 0 chr6 6879727 6879772 -182399782 + (CA)n Simple_repeat Simple_repeat 1 45 0 220 319 56 0 chr6 6880149 6880221 -182399333 - MIR SINE MIR -68 140 65 2359 112 0 0 chr6 6880344 6880647 -182398907 - AluSx SINE Alu -9 303 1 427 255 134 13 chr6 6882495 6882644 -182396910 - MIR SINE MIR -76 186 20 224 203 8 98 chr6 6883636 6883769 -182395785 + CT-rich Low_complexity Low_complexity 1 121 0 326 288 102 0 chr6 6883901 6884019 -182395535 + MLT1J LTR MaLR 67 196 -315 370 185 12 0 chr6 6884041 6884122 -182395432 - FRAM/FAM SINE Alu -93 82 1 412 313 0 8 chr6 6884125 6884253 -182395301 + MLT1J LTR MaLR 184 310 -201 296 269 40 54 chr6 6884980 6885129 -182394425 + LTR16C LTR ERVL 345 491 0 510 243 40 28 chr6 6885129 6885306 -182394248 + MLT1J LTR MaLR 311 489 -22 2033 116 42 0 chr6 6885331 6885616 -182393938 + AluSx SINE Alu 1 297 -15 395 289 159 32 chr6 6885968 6886245 -182393309 + MLT1I LTR MaLR 22 333 -76 1088 141 0 0 chr6 6887808 6887964 -182391590 - FRAM SINE Alu -12 164 9 251 250 31 73 chr6 6888172 6888268 -182391286 + MIR3 SINE MIR 108 199 -9 500 259 61 33 chr6 6888654 6888820 -182390734 + L1MB8 LINE L1 5944 6119 -59 2073 135 0 22 chr6 6888820 6889132 -182390422 - AluSx SINE Alu -7 305 1 500 259 61 33 chr6 6889132 6889177 -182390377 + L1MB8 LINE L1 6119 6161 -17 677 313 25 10 chr6 6889751 6889952 -182389602 + MIR SINE MIR 51 254 -8 216 97 0 0 chr6 6890825 6890856 -182388698 + (GGA)n Simple_repeat Simple_repeat 2 32 0 628 218 14 49 chr6 6891568 6891710 -182387844 - FLAM_A SINE Alu 0 142 6 281 254 203 17 chr6 6891876 6891994 -182387560 + MIR SINE MIR 106 245 -17 256 284 165 31 chr6 6891991 6892118 -182387436 - MIR3 SINE MIR -35 173 30 * 2063 74 67 7 chr6 6892132 6892470 -182387084 - AluY SINE Alu 0 354 1 1287 55 0 0 chr6 6892470 6892615 -182386939 - AluSq/x SINE Alu -167 145 1 341 88 35 0 chr6 6893182 6893239 -182386315 + CT-rich Low_complexity Low_complexity 1 59 0 320 307 79 18 chr6 6893246 6893360 -182386194 - L2 LINE L2 0 3313 3193 330 177 21 115 chr6 6894439 6894498 -182385056 - MER103 DNA DNA -77 89 41 1663 166 10 40 chr6 6894498 6894799 -182384755 - AluJo SINE Alu -20 292 1 330 177 21 115 chr6 6894799 6894835 -182384719 - MER103 DNA DNA -125 41 3 213 211 0 0 chr6 6894919 6894957 -182384597 + (CA)n Simple_repeat Simple_repeat 2 39 0 1073 248 56 12 chr6 6895432 6895751 -182383803 - MER46C DNA MER2_type 0 338 6 2363 89 0 16 chr6 6896170 6896484 -182383070 - AluY SINE Alu -2 309 1 2213 109 23 0 chr6 6896988 6897191 -182382363 - AluSg SINE Alu 0 329 115 243 0 0 0 chr6 6897191 6897218 -182382336 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2213 109 23 0 chr6 6897218 6897336 -182382218 - AluSg SINE Alu -214 115 1 267 102 61 20 chr6 6898089 6898138 -182381416 + MIR SINE MIR 199 249 -13 2346 90 3 22 chr6 6898304 6898615 -182380939 + AluSp SINE Alu 1 305 -8 1318 213 117 47 chr6 6898621 6898830 -182380724 + L1MD2 LINE L1 5914 6107 -252 180 0 0 0 chr6 6898830 6898850 -182380704 + (CA)n Simple_repeat Simple_repeat 1 20 0 1318 213 117 47 chr6 6898850 6899043 -182380511 + L1MD2 LINE L1 6107 6344 -15 320 310 60 10 chr6 6899206 6899306 -182380248 - MER91C DNA MER1_type -35 105 1 2170 116 0 0 chr6 6901939 6902246 -182377308 - AluSq SINE Alu 0 307 1 266 226 200 43 chr6 6903109 6903224 -182376330 + MIR SINE MIR 124 256 -6 236 318 79 16 chr6 6903325 6903451 -182376103 - MARNA DNA Mariner -380 206 73 2266 69 0 34 chr6 6903739 6904064 -182375490 + AluY SINE Alu 3 317 0 2201 137 0 0 chr6 6904231 6904538 -182375016 - AluSx SINE Alu -5 307 1 599 308 67 5 chr6 6904540 6904748 -182374806 - MIR SINE MIR -36 226 6 2463 149 38 33 chr6 6904909 6905333 -182374221 + MSTB LTR MaLR 1 426 0 2357 143 30 40 chr6 6906643 6906975 -182372579 - MSTC LTR MaLR -1 427 98 2582 63 0 0 chr6 6906975 6907277 -182372277 - AluY SINE Alu -9 302 1 2357 143 30 40 chr6 6907277 6907372 -182372182 - MSTC LTR MaLR -330 98 4 584 266 104 57 chr6 6908996 6909399 -182370155 - LTR16A LTR ERVL -7 443 22 358 218 89 65 chr6 6909537 6909638 -182369916 + L2 LINE L2 3186 3292 -21 2263 73 0 13 chr6 6909638 6909938 -182369616 - AluY SINE Alu -15 296 1 358 218 89 65 chr6 6909938 6909960 -182369594 + L2 LINE L2 3292 3312 -1 204 315 79 47 chr6 6910135 6910262 -182369292 + MIR3 SINE MIR 73 203 -5 2175 81 3 0 chr6 6910578 6910883 -182368671 + AluSp SINE Alu 1 306 0 194 314 0 0 chr6 6910898 6910949 -182368605 + L2 LINE L2 3213 3263 -9 362 301 90 8 chr6 6911282 6911415 -182368139 - MIR SINE MIR -118 144 1 619 219 89 89 chr6 6911545 6911860 -182367694 - MER102a DNA MER1_type -15 315 1 692 224 5 57 chr6 6912021 6912231 -182367323 - HAL1 LINE L1 -119 2388 2190 1893 204 9 61 chr6 6912274 6912734 -182366820 - MER41B LTR ERV1 -38 597 162 1739 258 108 14 chr6 6912795 6913435 -182366119 - HAL1 LINE L1 -304 2203 1504 7554 26 1 1 chr6 6913442 6914728 -182364826 + L1PA4 LINE L1 4882 6167 0 681 129 9 35 chr6 6915281 6915397 -182364157 + AluSq/x SINE Alu 23 135 -177 225 229 17 68 chr6 6915400 6915518 -182364036 - L1MC5 LINE L1 -247 7714 7603 380 279 27 20 chr6 6915740 6915887 -182363667 - L1MC5 LINE L1 -522 7439 7292 * 459 330 58 10 chr6 6915855 6916149 -182363405 - L1MC4a LINE L1 -393 7415 7108 379 83 0 0 chr6 6916850 6916910 -182362644 - L1PA7 LINE L1 -2 6152 6093 1963 108 0 0 chr6 6916991 6917259 -182362295 - AluSx SINE Alu -44 268 1 27 0 0 0 chr6 6917925 6917952 -182361602 + AT_rich Low_complexity Low_complexity 1 27 0 585 67 13 0 chr6 6918567 6918642 -182360912 + AluSq/x SINE Alu 64 139 -173 1676 100 4 0 chr6 6918642 6918872 -182360682 + AluSp SINE Alu 68 298 -15 497 292 152 0 chr6 6918976 6919147 -182360407 + MIR SINE MIR 29 225 -37 23 54 0 0 chr6 6919306 6919343 -182360211 + AT_rich Low_complexity Low_complexity 1 37 0 207 111 0 28 chr6 6919424 6919460 -182360094 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 185 35 69 0 chr6 6920532 6920561 -182358993 + T-rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr6 6920581 6920604 -182358950 + (TA)n Simple_repeat Simple_repeat 1 23 0 551 235 190 6 chr6 6920605 6920784 -182358770 + MER112 DNA MER1_type 49 260 0 1894 131 36 162 chr6 6920908 6920965 -182358589 - MER31B LTR ERV1 -7 459 396 764 168 0 15 chr6 6920965 6921096 -182358458 + FLAM_C SINE Alu 2 130 -3 1894 131 36 162 chr6 6921096 6921563 -182357991 - MER31B LTR ERV1 -70 396 1 2004 271 99 74 chr6 6921738 6921773 -182357781 + HAL1 LINE L1 116 149 -2358 261 0 0 0 chr6 6921773 6921802 -182357752 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2004 271 99 74 chr6 6921802 6923448 -182356106 + HAL1 LINE L1 149 1839 -668 2438 66 3 0 chr6 6923590 6923893 -182355661 - AluSp SINE Alu -9 304 1 454 235 63 75 chr6 6924378 6924646 -182354908 + HAL1 LINE L1 1974 2238 -269 819 251 215 36 chr6 6924667 6925053 -182354501 - LTR33 LTR ERVL -64 457 3 286 240 62 54 chr6 6925158 6925287 -182354267 + HAL1 LINE L1 2375 2504 -3 238 25 25 25 chr6 6925313 6925353 -182354201 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 387 286 182 0 chr6 6925403 6925557 -182353997 + MIR SINE MIR 37 218 -44 263 282 24 47 chr6 6925656 6925741 -182353813 + L2 LINE L2 3184 3266 -6 273 321 0 0 chr6 6926672 6926753 -182352801 + MLT1L LTR MaLR 412 492 -123 24 32 0 0 chr6 6926940 6926971 -182352583 + AT_rich Low_complexity Low_complexity 1 31 0 811 165 0 0 chr6 6926971 6927092 -182352462 - FLAM_A SINE Alu -12 121 1 347 328 16 8 chr6 6927660 6927788 -182351766 - MER5A DNA MER1_type -5 184 56 312 233 42 42 chr6 6927684 6927804 -182351750 + MER5A DNA MER1_type 41 160 -29 * 1747 158 0 10 chr6 6927891 6928188 -182351366 - AluJb SINE Alu -1 311 18 353 164 14 0 chr6 6929550 6929623 -182349931 + GA-rich Low_complexity Low_complexity 3 76 0 287 250 10 87 chr6 6930038 6930095 -182349459 + MER21B LTR ERV1 12 59 -804 228 35 0 0 chr6 6930095 6930124 -182349430 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 287 250 10 87 chr6 6930124 6930170 -182349384 + MER21B LTR ERV1 59 107 -756 2671 229 116 31 chr6 6930170 6930936 -182348618 + MER21B LTR ERV1 22 852 -11 883 177 58 22 chr6 6931059 6931285 -182348269 + MER33 DNA MER1_type 9 242 -82 2623 138 52 54 chr6 6931301 6931320 -182348234 - L1MB3 LINE L1 -17 6166 6148 2122 106 0 0 chr6 6931320 6931613 -182347941 - AluSg SINE Alu -17 293 1 2623 138 52 54 chr6 6931613 6932074 -182347480 - L1MB3 LINE L1 -35 6148 5617 2167 110 3 0 chr6 6932074 6932383 -182347171 - AluSg SINE Alu 0 310 1 2623 138 52 54 chr6 6932383 6932654 -182346900 - L1MB3 LINE L1 -566 5617 5347 573 106 0 43 chr6 6932655 6932749 -182346805 + MER33 DNA MER1_type 273 362 -1 2119 110 3 3 chr6 6933171 6933471 -182346083 + AluSq SINE Alu 1 300 -13 2070 119 10 3 chr6 6933920 6934231 -182345323 - AluSq SINE Alu 0 313 1 2187 105 0 3 chr6 6934501 6934814 -182344740 + AluSx SINE Alu 1 312 0 218 300 27 55 chr6 6934976 6935086 -182344468 + MIR SINE MIR 98 204 -58 1617 163 7 14 chr6 6935351 6935646 -182343908 + AluJo SINE Alu 1 293 -19 297 206 98 10 chr6 6936972 6937074 -182342480 + MER53 DNA DNA 10 120 -69 4672 158 144 31 chr6 6938656 6940063 -182339491 - pTR5 LTR ERV1 0 2438 742 316 273 120 13 chr6 6940324 6940474 -182339080 - L2 LINE L2 -328 2985 2820 2096 269 106 55 chr6 6940484 6940773 -182338781 - L2 LINE L2 -650 2664 2391 2042 63 0 0 chr6 6940773 6941025 -182338529 - L1PA6 LINE L1 -4 6150 5899 2096 269 106 55 chr6 6941025 6941298 -182338256 - L2 LINE L2 -923 2391 2133 1272 230 26 10 chr6 6941298 6941602 -182337952 + AluJb SINE Alu 4 312 0 2096 269 106 55 chr6 6941602 6941761 -182337793 - L2 LINE L2 -1181 2133 1984 2066 140 110 8 chr6 6941761 6942153 -182337401 + MSTB1 LTR MaLR 1 432 0 2096 269 106 55 chr6 6942153 6942633 -182336921 - L2 LINE L2 -1330 1984 1400 1401 155 83 31 chr6 6942649 6942939 -182336615 + MSTB LTR MaLR 1 305 -121 250 91 0 0 chr6 6942948 6942981 -182336573 - MER58 DNA MER1_type -2216 204 172 662 78 12 18 chr6 6942982 6943237 -182336317 + AluSg SINE Alu 1 308 -4 717 204 117 0 chr6 6943237 6943399 -182336155 - MER58 DNA MER1_type -2239 181 1 31 20 0 20 chr6 6944170 6944199 -182335355 + AT_rich Low_complexity Low_complexity 1 30 -18 1915 103 13 43 chr6 6944199 6944499 -182335055 - AluSx SINE Alu -21 291 1 31 20 0 20 chr6 6944499 6944518 -182335036 + AT_rich Low_complexity Low_complexity 30 48 0 537 168 9 62 chr6 6944596 6944709 -182334845 - MSTA LTR MaLR -321 107 1 2067 109 3 7 chr6 6944813 6945115 -182334439 - AluSx SINE Alu -11 301 1 509 279 90 31 chr6 6945265 6945487 -182334067 + MIR SINE MIR 20 254 -8 240 214 0 0 chr6 6945562 6945604 -182333950 + L2 LINE L2 3258 3299 -14 2073 97 30 3 chr6 6945916 6946214 -182333340 + AluSc SINE Alu 1 306 -3 189 0 0 0 chr6 6946967 6946988 -182332566 + (TG)n Simple_repeat Simple_repeat 2 22 0 2832 168 10 27 chr6 6947305 6947852 -182331702 + L1MB3 LINE L1 5633 6160 -15 2122 117 0 0 chr6 6947968 6948268 -182331286 + AluSx SINE Alu 1 300 -12 421 149 11 11 chr6 6948268 6948355 -182331199 + GA-rich Low_complexity Low_complexity 1 87 0 211 277 31 0 chr6 6999605 6999670 -182279884 + GA-rich Low_complexity Low_complexity 1 67 0 1776 154 0 0 chr6 6999831 7000111 -182279443 + AluJb SINE Alu 1 280 -32 1941 104 17 0 chr6 7000111 7000398 -182279156 + AluY SINE Alu 17 310 -1 240 111 0 0 chr6 7000398 7000434 -182279120 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 1043 153 5 37 chr6 7000434 7000624 -182278930 + L1PA15 LINE L1 5982 6165 0 1821 160 0 10 chr6 7000626 7000933 -182278621 + AluSx SINE Alu 1 304 -8 21 36 0 0 chr6 7001173 7001201 -182278353 + AT_rich Low_complexity Low_complexity 1 28 0 1486 218 113 109 chr6 7001309 7001405 -182278149 - Charlie7 DNA MER1_type -147 2465 2371 2331 68 3 0 chr6 7001405 7001698 -182277856 + AluY SINE Alu 1 294 -17 1486 218 113 109 chr6 7001698 7002579 -182276975 - Charlie7 DNA MER1_type -241 2371 1485 242 246 0 0 chr6 7002603 7002660 -182276894 + L1MC4 LINE L1 6649 6705 -1337 302 287 96 44 chr6 7002738 7002874 -182276680 - Charlie7 DNA MER1_type -2328 284 142 1844 170 0 0 chr6 7002885 7003197 -182276357 + AluJb SINE Alu 1 312 0 577 320 13 53 chr6 7003339 7003510 -182276044 + MIR SINE MIR 46 207 -55 2075 104 0 10 chr6 7003510 7003808 -182275746 - AluSg SINE Alu -15 295 1 577 320 13 53 chr6 7003808 7003861 -182275693 + MIR SINE MIR 207 261 -1 399 367 67 11 chr6 7003907 7004177 -182275377 - L2 LINE L2 -665 2649 2365 817 236 132 0 chr6 7004177 7004389 -182275165 - MIR SINE MIR -10 252 13 2201 98 3 0 chr6 7005555 7005852 -182273702 + AluSx SINE Alu 1 298 -14 293 184 35 14 chr6 7006828 7006969 -182272585 + CT-rich Low_complexity Low_complexity 1 144 0 901 311 86 6 chr6 7007170 7007508 -182272046 - LTR16C LTR ERVL -2 489 125 274 156 31 0 chr6 7007586 7007650 -182271904 + (TA)n Simple_repeat Simple_repeat 1 66 0 305 218 24 48 chr6 7007946 7008070 -182271484 + LTR67 LTR ERVL 426 546 -11 298 273 0 0 chr6 7008245 7008311 -182271243 + L2 LINE L2 3205 3270 -2 525 208 0 10 chr6 7008531 7008632 -182270922 + MER45A DNA AcHobo 79 178 0 744 86 0 0 chr6 7009182 7009287 -182270267 + (GGAA)n Simple_repeat Simple_repeat 1 105 0 372 77 0 0 chr6 7009387 7009439 -182270115 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 360 242 17 22 chr6 7009396 7009574 -182269980 + GA-rich Low_complexity Low_complexity 4 180 0 * 21 36 0 0 chr6 7010424 7010452 -182269102 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr6 7010876 7010899 -182268655 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 531 244 30 75 chr6 7011174 7011375 -182268179 + MER112 DNA MER1_type 52 243 -17 1938 118 20 0 chr6 7011377 7011730 -182267824 - AluSx SINE Alu 0 359 1 272 218 90 13 chr6 7012157 7012235 -182267319 + LTR33A LTR ERVL 440 523 0 1779 129 0 0 chr6 7012525 7012780 -182266774 - AluSx SINE Alu -56 256 2 409 210 25 4 chr6 7013195 7013314 -182266240 + MER5A DNA MER1_type 24 186 -3 270 327 80 43 chr6 7013401 7013563 -182265991 + MIR SINE MIR 19 186 -76 306 328 11 17 chr6 7013768 7013942 -182265612 + A-rich Low_complexity Low_complexity 3 175 0 299 210 0 12 chr6 7014475 7014556 -182264998 + GA-rich Low_complexity Low_complexity 4 83 0 933 143 0 0 chr6 7016272 7016405 -182263149 - FLAM_C SINE Alu 0 133 1 7183 159 88 104 chr6 7016660 7017259 -182262295 - L1MC3 LINE L1 0 7785 7177 234 266 0 16 chr6 7017259 7017323 -182262231 - MLT1F1 LTR MaLR -460 107 45 7183 159 88 104 chr6 7017323 7018664 -182260890 - L1MC3 LINE L1 -608 7177 5810 465 285 201 11 chr6 7018737 7019000 -182260554 + L2 LINE L2 3001 3313 0 1851 119 25 14 chr6 7019270 7019556 -182259998 + AluSx SINE Alu 1 289 -23 1851 105 0 66 chr6 7019556 7019905 -182259649 + AluSx SINE Alu 1 329 0 1081 273 133 8 chr6 7020017 7020401 -182259153 + MER115 DNA AcHobo 5 436 -257 583 305 65 40 chr6 7020787 7021217 -182258337 - L1MC3 LINE L1 -405 5716 5276 1892 167 0 0 chr6 7021577 7021889 -182257665 - AluSx SINE Alu 0 312 1 226 361 139 5 chr6 7022093 7022309 -182257245 - L2 LINE L2 -1 3271 3027 636 177 18 0 chr6 7022315 7022428 -182257126 + FRAM SINE Alu 44 158 -18 1500 105 5 0 chr6 7022447 7022657 -182256897 - AluSg/x SINE Alu -17 293 83 187 86 57 29 chr6 7022969 7023004 -182256550 - MER5A DNA MER1_type -26 163 128 2209 90 0 3 chr6 7023007 7023308 -182256246 + AluSc SINE Alu 1 300 -9 610 281 77 108 chr6 7023617 7024009 -182255545 + MLT1K LTR MaLR 134 510 -78 657 178 31 8 chr6 7024009 7024138 -182255416 - FLAM_C SINE Alu 0 133 2 610 281 77 108 chr6 7024138 7024215 -182255339 + MLT1K LTR MaLR 510 588 0 1276 203 8 4 chr6 7025205 7025442 -182254112 + MER8 DNA MER2_type 2 239 0 822 201 12 6 chr6 7025442 7025606 -182253948 + MER58B DNA MER1_type 177 341 0 461 201 21 111 chr6 7025811 7025913 -182253641 - L2 LINE L2 -1 3312 3225 2081 133 0 13 chr6 7025913 7026230 -182253324 + AluSq SINE Alu 1 313 0 461 201 21 111 chr6 7026230 7026271 -182253283 - L2 LINE L2 -88 3225 3182 240 200 71 14 chr6 7026307 7026377 -182253177 - MIR SINE MIR -97 111 38 1952 105 10 10 chr6 7027227 7027521 -182252033 + AluSx SINE Alu 1 294 -18 715 250 71 95 chr6 7027819 7028038 -182251516 - L2 LINE L2 0 3313 3090 667 144 127 0 chr6 7028038 7028156 -182251398 + AluJo SINE Alu 1 133 -169 715 250 71 95 chr6 7028156 7028169 -182251385 - L2 LINE L2 -223 3090 3078 2259 105 0 6 chr6 7028169 7028483 -182251071 + AluSx SINE Alu 1 312 0 1245 202 73 35 chr6 7028487 7028774 -182250780 + AluJb SINE Alu 2 299 -3 715 250 71 95 chr6 7028774 7029031 -182250523 - L2 LINE L2 -238 3075 2830 262 278 56 0 chr6 7029227 7029317 -182250237 + L2 LINE L2 3217 3311 -2 224 279 63 0 chr6 7029977 7030056 -182249498 - MER5A DNA MER1_type -73 116 33 676 239 117 5 chr6 7030137 7030334 -182249220 - MIR SINE MIR -26 236 18 197 203 102 34 chr6 7031704 7031763 -182247791 - MIR3 SINE MIR -133 75 13 1315 215 39 16 chr6 7032058 7032370 -182247184 - MER33 DNA MER1_type 0 324 6 296 100 0 20 chr6 7032512 7032562 -182246992 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 978 134 0 0 chr6 7032644 7032793 -182246761 + AluJo SINE Alu 134 282 -30 21 0 0 0 chr6 7032793 7032814 -182246740 + AT_rich Low_complexity Low_complexity 1 21 0 2082 119 3 0 chr6 7032985 7033288 -182246266 + AluSq SINE Alu 1 304 -9 243 88 0 0 chr6 7033786 7033820 -182245734 + (T)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr6 7034098 7034120 -182245434 + (TTCA)n Simple_repeat Simple_repeat 2 23 0 209 156 0 0 chr6 7034550 7034582 -182244972 + MIR SINE MIR 114 145 -63 968 227 158 27 chr6 7034614 7035020 -182244534 - LTR16B LTR ERVL -4 460 2 2285 148 16 3 chr6 7035038 7035423 -182244131 - MLT1B LTR MaLR 0 390 1 348 331 39 6 chr6 7035505 7035683 -182243871 - HERV16 LTR ERVL -361 5403 5220 268 265 116 48 chr6 7036059 7036206 -182243348 - HERV16 LTR ERVL -4435 561 405 213 265 229 0 chr6 7036489 7036572 -182242982 + MIR SINE MIR 101 202 -60 1684 212 8 33 chr6 7036578 7036941 -182242613 + MLT1A1 LTR MaLR 1 354 -11 481 340 71 30 chr6 7036984 7037281 -182242273 + L1MC4a LINE L1 4619 4927 -1219 376 233 0 23 chr6 7037348 7037434 -182242120 - MER96 DNA MER1_type? -1 174 91 292 305 130 7 chr6 7037513 7037667 -182241887 + L1MC4a LINE L1 5729 5901 -1907 2346 58 0 0 chr6 7038384 7038675 -182240879 - AluY SINE Alu -14 297 7 27 0 0 0 chr6 7038724 7038751 -182240803 + AT_rich Low_complexity Low_complexity 1 27 0 2874 150 41 44 chr6 7038753 7039318 -182240236 + L1MB8 LINE L1 5476 6038 -140 1818 188 49 10 chr6 7039319 7039728 -182239826 - L1MC1 LINE L1 0 6333 5909 738 180 20 13 chr6 7039729 7039879 -182239675 + L1MB8 LINE L1 6027 6177 -1 1674 140 0 4 chr6 7040294 7040558 -182238996 - AluJo SINE Alu -9 303 41 611 145 192 87 chr6 7040697 7040869 -182238685 - MER20 DNA MER1_type -1 218 29 225 65 0 0 chr6 7040874 7040905 -182238649 + (TC)n Simple_repeat Simple_repeat 2 32 0 336 326 64 28 chr6 7041320 7041461 -182238093 - MIR SINE MIR -12 250 105 573 157 352 179 chr6 7041475 7041708 -182237846 + MLT1H LTR MaLR 14 206 -343 2293 89 0 0 chr6 7041708 7042012 -182237542 + AluY SINE Alu 1 304 -7 573 157 352 179 chr6 7042012 7042213 -182237341 + MLT1H LTR MaLR 206 549 0 723 207 47 61 chr6 7043002 7043215 -182236339 + MER63A DNA MER1_type 1 210 0 682 313 78 14 chr6 7043242 7043526 -182236028 - MLT1J LTR MaLR 0 511 210 931 135 0 59 chr6 7043573 7043743 -182235811 - AluJo SINE Alu -17 295 136 264 279 171 16 chr6 7043806 7043935 -182235619 - MLT1J LTR MaLR -362 149 1 304 261 52 0 chr6 7044181 7044296 -182235258 - MER113 DNA MER1_type? -399 122 2 294 203 0 16 chr6 7044313 7044377 -182235177 - MIR SINE MIR -61 147 85 1789 133 11 11 chr6 7044425 7044710 -182234844 + AluJb SINE Alu 1 285 -27 217 369 67 34 chr6 7045445 7045624 -182233930 + L3b LINE CR1 1372 1556 -27 928 249 39 35 chr6 7046554 7046811 -182232743 - MLT1J LTR MaLR 0 511 254 894 250 169 43 chr6 7046815 7047299 -182232255 + MLT1H LTR MaLR 1 545 -4 2257 90 3 0 chr6 7047603 7047939 -182231615 + AluSx SINE Alu 1 337 0 27 48 0 32 chr6 7047957 7047981 -182231573 + AT_rich Low_complexity Low_complexity 1 24 -37 760 171 0 23 chr6 7047981 7048110 -182231444 - AluJo SINE Alu -176 126 1 27 48 0 32 chr6 7048110 7048148 -182231406 + AT_rich Low_complexity Low_complexity 24 61 0 363 347 70 14 chr6 7048359 7048572 -182230982 + L3b LINE CR1 1351 1575 -8 300 255 39 20 chr6 7048609 7048711 -182230843 - L2 LINE L2 -32 3281 3178 593 165 122 17 chr6 7048845 7048960 -182230594 + FLAM_C SINE Alu 1 127 -6 1540 248 118 83 chr6 7049110 7049552 -182230002 + Charlie2a DNA MER1_type 36 461 -2401 237 83 0 0 chr6 7049552 7049588 -182229966 + (TG)n Simple_repeat Simple_repeat 1 36 0 1540 248 118 83 chr6 7049588 7049931 -182229623 + Charlie2a DNA MER1_type 461 791 -2071 6530 42 0 0 chr6 7049931 7050701 -182228853 + L1PA6 LINE L1 5384 6153 -1 1540 248 118 83 chr6 7050701 7050775 -182228779 + Charlie2a DNA MER1_type 791 861 -2001 1837 102 0 8 chr6 7050775 7051030 -182228524 + AluSx SINE Alu 47 299 -13 1540 248 118 83 chr6 7051030 7051070 -182228484 + Charlie2a DNA MER1_type 861 968 -1894 631 331 35 3 chr6 7051136 7051426 -182228128 - L1MC4a LINE L1 -1878 5930 5632 1998 128 3 0 chr6 7052101 7052391 -182227163 + AluSq SINE Alu 6 296 -17 541 225 0 180 chr6 7052420 7052687 -182226867 - MIR SINE MIR -8 254 36 360 0 0 0 chr6 7052692 7052732 -182226822 + (TG)n Simple_repeat Simple_repeat 2 41 0 1423 259 80 35 chr6 7052750 7052828 -182226726 - MLT1J LTR MaLR -3 508 435 2250 113 0 0 chr6 7052828 7053137 -182226417 + AluSg SINE Alu 1 309 -1 1423 259 80 35 chr6 7053137 7053544 -182226010 - MLT1J LTR MaLR -76 435 1 373 307 246 34 chr6 7053557 7054410 -182225144 - L3 LINE CR1 0 1577 544 400 245 93 29 chr6 7054602 7054741 -182224813 - L2 LINE L2 0 3272 3125 * 594 267 99 29 chr6 7054732 7054966 -182224588 + L2 LINE L2 2682 2898 -415 579 53 0 0 chr6 7054966 7055041 -182224513 + (CATAC)n Simple_repeat Simple_repeat 2 76 0 594 267 99 29 chr6 7055041 7055317 -182224237 + L2 LINE L2 2898 3233 -80 273 119 0 0 chr6 7055374 7055416 -182224138 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 295 275 161 34 chr6 7055443 7055592 -182223962 - L2 LINE L2 -176 3096 2929 302 401 70 13 chr6 7055692 7055905 -182223649 - L2 LINE L2 -508 2806 2606 580 274 60 19 chr6 7055905 7055996 -182223558 - MER58A DNA MER1_type -2196 224 138 1916 146 3 3 chr6 7055996 7056304 -182223250 + AluJo SINE Alu 1 308 -4 1686 145 10 27 chr6 7056313 7056610 -182222944 + AluJb SINE Alu 1 292 -20 580 274 60 19 chr6 7056610 7056723 -182222831 - MER58A DNA MER1_type -2289 131 1 302 401 70 13 chr6 7056723 7056811 -182222743 - L2 LINE L2 -708 2606 2488 187 123 26 61 chr6 7057643 7057676 -182221878 + A-rich Low_complexity Low_complexity 2 35 -76 846 141 0 0 chr6 7057676 7057797 -182221757 + FLAM_C SINE Alu 1 121 -12 187 123 26 61 chr6 7057797 7057877 -182221677 + A-rich Low_complexity Low_complexity 35 111 0 2210 97 0 7 chr6 7060433 7060741 -182218813 + AluY SINE Alu 1 306 -5 2085 101 0 33 chr6 7060745 7061051 -182218503 + AluSg SINE Alu 1 296 -14 1652 180 20 3 chr6 7061057 7061357 -182218197 + L1MB3 LINE L1 5815 6119 -64 733 184 73 0 chr6 7061362 7061498 -182218056 + AluJb SINE Alu 150 295 -17 317 150 0 150 chr6 7061498 7061542 -182218012 + L1MB2 LINE L1 6097 6125 -46 2183 75 27 10 chr6 7061542 7061836 -182217718 - AluSx SINE Alu -13 299 1 317 150 0 150 chr6 7061836 7061871 -182217683 + L1MB2 LINE L1 6125 6164 -7 354 301 199 5 chr6 7062258 7062444 -182217110 + MIR SINE MIR 4 225 -37 671 288 142 34 chr6 7062770 7063207 -182216347 - LTR33A LTR ERVL -16 507 24 185 235 98 0 chr6 7063935 7063986 -182215568 - MIR SINE MIR -97 165 110 209 351 0 14 chr6 7064152 7064226 -182215328 + GA-rich Low_complexity Low_complexity 2 74 0 219 232 104 48 chr6 7065817 7065942 -182213612 + MIR SINE MIR 17 148 -60 310 255 106 0 chr6 7066178 7066272 -182213282 + MER5A DNA MER1_type 2 105 -84 875 206 33 0 chr6 7066341 7066521 -182213033 - MER5A DNA MER1_type -3 186 1 2038 123 3 0 chr6 7066824 7067126 -182212428 - AluSx SINE Alu -9 303 1 1867 148 0 3 chr6 7067301 7067599 -182211955 + AluJb SINE Alu 1 297 -15 1314 192 16 4 chr6 7067893 7068167 -182211387 + AluJo SINE Alu 30 306 0 356 277 0 27 chr6 7068220 7068332 -182211222 - L1ME LINE L1 -307 5814 5706 1916 82 4 0 chr6 7068428 7068684 -182210870 + L1PA14 LINE L1 5728 5984 -177 1133 162 5 0 chr6 7068784 7068988 -182210566 + L1PA14 LINE L1 5955 6159 -2 261 302 84 20 chr6 7069025 7069227 -182210327 - L1ME LINE L1 -659 5511 5297 2237 185 49 29 chr6 7069730 7070221 -182209333 + LTR40a LTR ERVL 19 519 0 404 271 235 28 chr6 7070400 7070651 -182208903 + L3 LINE CR1 1252 1554 -23 2031 88 32 0 chr6 7071020 7071305 -182208249 - AluSp SINE Alu -19 294 1 440 213 11 11 chr6 7071698 7071792 -182207762 + MIR SINE MIR 46 139 -69 1982 133 0 0 chr6 7071842 7072142 -182207412 + AluSg SINE Alu 1 300 -10 252 0 0 0 chr6 7072143 7072171 -182207383 + (TA)n Simple_repeat Simple_repeat 2 29 0 1767 156 32 0 chr6 7072172 7072454 -182207100 + AluJb SINE Alu 1 291 -21 990 184 36 31 chr6 7072459 7072682 -182206872 + L1MC1 LINE L1 6107 6330 -3 222 333 90 42 chr6 7073997 7074186 -182205368 - L2 LINE L2 -2 3270 3073 729 142 24 39 chr6 7074531 7074658 -182204896 - FLAM_A SINE Alu -10 132 8 1403 193 11 4 chr6 7074662 7074932 -182204622 - AluJb SINE Alu -40 272 1 185 262 83 48 chr6 7075114 7075198 -182204356 - L2 LINE L2 0 3272 3186 822 104 0 0 chr6 7075489 7075604 -182203950 - AluSg/x SINE Alu -10 302 188 3499 203 31 55 chr6 7075676 7076413 -182203141 - MER45B DNA AcHobo -213 827 112 2020 135 0 0 chr6 7076413 7076709 -182202845 + AluSx SINE Alu 1 296 -16 3499 203 31 55 chr6 7076709 7076819 -182202735 - MER45B DNA AcHobo -928 112 1 187 315 115 105 chr6 7077004 7077309 -182202245 - L2 LINE L2 -5 3267 2960 545 251 87 90 chr6 7077309 7077498 -182202056 - LTR16C LTR ERVL -2 489 300 1664 141 85 0 chr6 7077498 7077768 -182201786 - AluJo SINE Alu -15 297 5 545 251 87 90 chr6 7077768 7077944 -182201610 - LTR16C LTR ERVL -191 300 125 680 232 14 0 chr6 7078115 7078253 -182201301 - MER5A DNA MER1_type 0 189 50 380 286 207 0 chr6 7078603 7078743 -182200811 + LTR33 LTR ERVL 42 210 -311 248 301 82 20 chr6 7078865 7079011 -182200543 + LTR33 LTR ERVL 365 519 -2 191 61 30 0 chr6 7079242 7079275 -182200279 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 573 273 171 6 chr6 7080226 7080402 -182199152 - MIR SINE MIR -16 246 42 624 195 124 12 chr6 7080440 7080609 -182198945 + MER20 DNA MER1_type 32 219 0 1800 124 7 34 chr6 7081096 7081394 -182198160 + AluJb SINE Alu 1 290 -22 197 229 21 104 chr6 7082116 7082212 -182197342 - MER5A DNA MER1_type -93 96 9 2204 101 7 0 chr6 7082939 7083235 -182196319 - AluSx SINE Alu -14 298 1 632 260 13 104 chr6 7083261 7083492 -182196062 - MIR SINE MIR -10 252 43 521 153 0 0 chr6 7084521 7084606 -182194948 - AluJ/FRAM SINE Alu -1 311 227 1267 186 53 4 chr6 7084609 7084835 -182194719 + MLT1A1 LTR MaLR 127 363 -2 310 268 14 0 chr6 7084950 7085021 -182194533 - L2 LINE L2 -4 3309 3238 315 246 144 57 chr6 7085904 7086135 -182193419 - MIR SINE MIR 0 262 4 195 42 0 0 chr6 7086274 7086298 -182193256 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1325 137 121 19 chr6 7086322 7086578 -182192976 - AluJo SINE Alu -30 282 1 837 174 0 0 chr6 7087166 7087375 -182192179 - AluJb SINE Alu 0 342 134 219 271 164 21 chr6 7087680 7087820 -182191734 - MIR SINE MIR -12 250 91 1370 206 44 16 chr6 7087830 7088146 -182191408 - MER58B DNA MER1_type -16 325 1 231 261 14 43 chr6 7088244 7088313 -182191241 - MIR3 SINE MIR -134 74 8 519 66 0 0 chr6 7088906 7088982 -182190572 + (TG)n Simple_repeat Simple_repeat 1 76 0 315 302 56 24 chr6 7089384 7089510 -182190044 + L2 LINE L2 3127 3256 -16 267 236 57 89 chr6 7090099 7090222 -182189332 - L2 LINE L2 -16 3297 3179 180 265 0 41 chr6 7090228 7090277 -182189277 - L2 LINE L2 -3 3310 3264 291 54 0 0 chr6 7092233 7092270 -182187284 + (TG)n Simple_repeat Simple_repeat 1 37 0 1823 192 79 8 chr6 7094790 7095159 -182184395 - MSTD LTR MaLR 0 396 2 265 241 176 0 chr6 7096054 7096162 -182183392 - L2 LINE L2 -645 2669 2543 384 239 127 70 chr6 7096523 7096697 -182182857 + MIR SINE MIR 5 206 -56 2043 118 0 0 chr6 7096697 7096984 -182182570 + AluSx SINE Alu 1 287 -25 384 239 127 70 chr6 7096984 7097045 -182182509 + MIR SINE MIR 206 262 0 21 0 0 0 chr6 7097062 7097083 -182182471 + AT_rich Low_complexity Low_complexity 1 21 0 195 275 132 33 chr6 7098211 7098302 -182181252 + L2 LINE L2 3172 3271 -1 196 75 25 25 chr6 7098333 7098373 -182181181 + (CCCTAA)n Simple_repeat Simple_repeat 1 40 0 232 342 25 0 chr6 7098465 7098544 -182181010 - MIR3 SINE MIR -2 206 126 472 292 30 55 chr6 7099198 7099400 -182180154 - MIR SINE MIR -53 209 13 829 187 18 6 chr6 7099693 7099864 -182179690 + FRAM SINE Alu 2 174 -2 2394 41 3 0 chr6 7101175 7101469 -182178085 - AluY SINE Alu -16 295 1 1583 180 3 10 chr6 7101589 7101900 -182177654 - AluJo SINE Alu -3 309 1 433 327 210 13 chr6 7102030 7102425 -182177129 - L3 LINE CR1 -20 1557 1085 805 216 72 19 chr6 7102439 7102647 -182176907 - MIR SINE MIR -10 252 34 745 237 17 6 chr6 7102663 7102836 -182176718 - MER5B DNA MER1_type -3 175 1 843 130 0 8 chr6 7103513 7103636 -182175918 - FLAM_C SINE Alu -11 122 1 584 120 10 0 chr6 7104814 7104914 -182174640 + (CA)n Simple_repeat Simple_repeat 2 102 0 258 167 0 0 chr6 7104914 7104968 -182174586 - MER4-int LTR ERV1 -5433 1165 1112 301 115 0 0 chr6 7104979 7105031 -182174523 - MER4-int LTR ERV1 -5436 1162 1111 207 162 0 0 chr6 7105032 7105069 -182174485 + (CA)n Simple_repeat Simple_repeat 1 37 0 258 135 39 0 chr6 7105069 7105121 -182174433 - MER4-int LTR ERV1 -5434 1164 1111 779 204 0 6 chr6 7105128 7105309 -182174245 + (CA)n Simple_repeat Simple_repeat 1 180 0 2059 142 0 0 chr6 7106012 7106323 -182173231 - AluSx SINE Alu -1 311 1 1794 168 3 0 chr6 7106856 7107148 -182172406 + AluJo SINE Alu 1 293 -19 362 272 191 0 chr6 7107384 7107531 -182172023 + MER5A DNA MER1_type 9 183 -6 1716 172 26 0 chr6 7107535 7107838 -182171716 + AluJb SINE Alu 1 311 -1 859 146 8 0 chr6 7108095 7108225 -182171329 + FLAM_C SINE Alu 1 131 -2 430 322 64 0 chr6 7108694 7108865 -182170689 + LTR33 LTR ERVL 2 183 -338 246 277 200 0 chr6 7108952 7109107 -182170447 + LTR33 LTR ERVL 327 512 -9 737 192 0 0 chr6 7109159 7109284 -182170270 - FLAM_A SINE Alu -8 125 1 2052 135 7 0 chr6 7109569 7109873 -182169681 - AluSx SINE Alu -6 306 1 2349 73 0 6 chr6 7109883 7110196 -182169358 - AluY SINE Alu 0 311 1 494 258 74 94 chr6 7110273 7110469 -182169085 + L1MB3 LINE L1 4742 4940 -1181 1817 138 0 10 chr6 7110469 7110766 -182168788 + AluSx SINE Alu 1 294 -18 494 258 74 94 chr6 7110766 7111102 -182168452 + L1MB3 LINE L1 4940 5281 -840 1759 154 26 13 chr6 7111102 7111408 -182168146 - 7SLRNA srpRNA srpRNA -6 314 5 494 258 74 94 chr6 7111408 7111583 -182167971 + L1MB3 LINE L1 5281 5458 -663 1575 137 98 0 chr6 7111583 7111839 -182167715 + AluSc SINE Alu 1 305 0 196 42 0 0 chr6 7111839 7111863 -182167691 + (TAAA)n Simple_repeat Simple_repeat 2 152 0 494 258 74 94 chr6 7111863 7111882 -182167672 + L1MB3 LINE L1 5458 5476 -645 2246 55 0 10 chr6 7111882 7112172 -182167382 + AluY SINE Alu 1 287 -24 494 258 74 94 chr6 7112172 7112386 -182167168 + L1MB3 LINE L1 5476 5662 -459 4686 152 29 39 chr6 7112424 7113688 -182165866 + pTR5 LTR ERV1 175 2294 -144 1461 133 27 19 chr6 7113753 7114016 -182165538 + AluSx SINE Alu 10 274 -38 1360 182 16 0 chr6 7114130 7114388 -182165166 - AluJo SINE Alu -50 262 1 284 0 28 0 chr6 7115386 7115422 -182164132 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 2083 114 41 0 chr6 7115927 7116310 -182163244 + L1MB3 LINE L1 5658 6182 -1 792 145 8 0 chr6 7116317 7116434 -182163120 + FLAM_C SINE Alu 2 119 -24 2390 60 0 3 chr6 7116507 7116807 -182162747 - AluY SINE Alu -12 299 1 8997 45 9 3 chr6 7116861 7118746 -182160808 - L1PA6 LINE L1 0 6154 4250 36 0 0 0 chr6 7118760 7118796 -182160758 + AT_rich Low_complexity Low_complexity 1 36 0 218 253 121 81 chr6 7119386 7119485 -182160069 + MIR SINE MIR 49 151 -111 449 174 0 0 chr6 7119485 7119554 -182160000 + Tigger2 DNA MER2_type 1 69 -2649 * 2563 149 27 18 chr6 7119544 7119986 -182159568 + Tigger2 DNA MER2_type 2273 2718 0 1606 149 53 4 chr6 7119988 7120151 -182159403 - AluJo SINE Alu -17 295 111 369 0 0 0 chr6 7120151 7120192 -182159362 + (TG)n Simple_repeat Simple_repeat 2 42 0 1606 149 53 4 chr6 7120192 7120309 -182159245 - AluJo SINE Alu -201 111 1 335 60 20 0 chr6 7120350 7120400 -182159154 + (TA)n Simple_repeat Simple_repeat 2 52 0 1714 151 4 0 chr6 7121332 7121603 -182157951 - AluJo SINE Alu -40 272 1 385 256 90 45 chr6 7121615 7121654 -182157900 + MIR SINE MIR 111 147 -115 2238 75 0 0 chr6 7121654 7121956 -182157598 + AluY SINE Alu 3 304 0 385 256 90 45 chr6 7121956 7122048 -182157506 + MIR SINE MIR 147 249 -13 421 273 72 57 chr6 7122097 7122291 -182157263 - MIR SINE MIR 0 262 66 274 258 0 16 chr6 7122502 7122564 -182156990 - L2 LINE L2 -109 3163 3103 1405 148 94 32 chr6 7122645 7122922 -182156632 - AluJb SINE Alu -16 296 3 2186 133 68 0 chr6 7122995 7123378 -182156176 - L1MA9 LINE L1 0 6312 5904 1366 169 110 19 chr6 7123378 7123663 -182155891 + L1 LINE L1 4655 4971 -1175 2288 164 25 70 chr6 7123663 7124146 -182155408 + LOR1b LTR ERV1 1 461 0 1366 169 110 19 chr6 7124146 7124168 -182155386 + L1 LINE L1 4971 4990 -1156 180 0 0 0 chr6 7124331 7124351 -182155203 + (CATAC)n Simple_repeat Simple_repeat 1 20 0 3890 198 259 25 chr6 7124971 7126111 -182153443 + pTR5 LTR ERV1 1033 2438 0 502 277 36 42 chr6 7126114 7126280 -182153274 + MER5A DNA MER1_type 23 187 -2 1561 161 34 38 chr6 7126875 7127000 -182152554 + AluSx SINE Alu 1 125 -187 2103 105 10 10 chr6 7127000 7127306 -182152248 + AluSp SINE Alu 1 306 -7 1561 161 34 38 chr6 7127306 7127472 -182152082 + AluSx SINE Alu 125 291 -21 389 236 264 21 chr6 7127480 7127624 -182151930 + MER5A DNA MER1_type 11 189 0 267 265 174 10 chr6 7127750 7127848 -182151706 + MER5B DNA MER1_type 1 114 -64 1790 116 0 0 chr6 7127856 7128106 -182151448 - AluSx SINE Alu -14 298 49 3739 153 52 31 chr6 7128106 7128875 -182150679 - LTR1 LTR ERV1 0 785 1 382 137 0 7 chr6 7128875 7128944 -182150610 - Alu SINE Alu -249 52 1 241 243 142 95 chr6 7129987 7130056 -182149498 - L2 LINE L2 -2 3270 3206 2128 114 3 0 chr6 7130056 7130354 -182149200 + AluSg SINE Alu 1 299 -11 241 243 142 95 chr6 7130354 7130432 -182149122 - L2 LINE L2 -66 3206 3116 316 341 89 42 chr6 7130676 7130890 -182148664 - L1ME LINE L1 -516 5605 5382 209 314 43 0 chr6 7131586 7131656 -182147898 + MIR SINE MIR 58 130 -78 565 286 177 16 chr6 7131659 7131907 -182147647 - LTR16A LTR ERVL 0 450 163 369 289 70 16 chr6 7131972 7132100 -182147454 + MIR SINE MIR 128 262 0 241 250 0 33 chr6 7132148 7132208 -182147346 - L2 LINE L2 -1 3312 3255 236 290 121 0 chr6 7132301 7132425 -182147129 - L2 LINE L2 -351 2962 2824 1449 214 46 89 chr6 7132455 7133108 -182146446 + L1MC5 LINE L1 7300 7924 -37 1142 210 25 18 chr6 7133404 7133685 -182145869 + L1ME3 LINE L1 5648 5930 -232 476 243 128 7 chr6 7133708 7133856 -182145698 + L1ME3 LINE L1 5989 6154 -8 25 31 0 0 chr6 7133866 7133898 -182145656 + AT_rich Low_complexity Low_complexity 1 32 0 1500 151 55 27 chr6 7133963 7134255 -182145299 - AluJb SINE Alu -8 304 5 253 307 0 0 chr6 7134282 7134357 -182145197 + MER94 DNA DNA 3 77 -57 883 148 0 0 chr6 7134357 7134485 -182145069 + FLAM_C SINE Alu 1 128 -5 379 320 11 55 chr6 7134595 7134776 -182144778 - MER5B DNA MER1_type 0 178 6 477 213 46 19 chr6 7135080 7135188 -182144366 - MER81 DNA DNA -1 113 3 2045 102 58 0 chr6 7135867 7136161 -182143393 + AluSp SINE Alu 1 311 -2 2143 115 0 6 chr6 7136309 7136623 -182142931 + AluSx SINE Alu 1 312 0 279 356 83 8 chr6 7136917 7137049 -182142505 + MIR3 SINE MIR 60 201 -7 542 259 80 4 chr6 7137128 7137375 -182142179 + L1MB3 LINE L1 5263 5523 -639 1996 101 20 33 chr6 7138224 7138530 -182141024 + AluSx SINE Alu 1 302 -10 253 312 32 32 chr6 7138957 7139050 -182140504 - MIR SINE MIR -112 150 58 516 334 34 61 chr6 7139571 7139897 -182139657 + L2 LINE L2 2914 3230 -42 1823 142 3 16 chr6 7140325 7140634 -182138920 - AluJo SINE Alu -7 305 1 1100 146 16 5 chr6 7140866 7141051 -182138503 + MER5A DNA MER1_type 3 189 0 528 286 10 46 chr6 7141063 7141259 -182138295 + L2 LINE L2 3124 3312 -1 1979 109 0 7 chr6 7141958 7142243 -182137311 + AluSx SINE Alu 7 289 -23 514 191 191 0 chr6 7144842 7144952 -182134602 + FLAM_C SINE Alu 2 132 -11 23 0 0 0 chr6 7144954 7144977 -182134577 + AT_rich Low_complexity Low_complexity 1 23 0 287 256 80 16 chr6 7145092 7145217 -182134337 + L2 LINE L2 2148 2280 -1034 1517 173 35 7 chr6 7145586 7145869 -182133685 + AluJo SINE Alu 1 291 -21 180 0 0 0 chr6 7145875 7145895 -182133659 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2180 100 0 0 chr6 7146485 7146785 -182132769 + AluSx SINE Alu 1 300 -12 1686 161 29 0 chr6 7147587 7147861 -182131693 + AluJb SINE Alu 1 282 -30 1890 132 0 11 chr6 7148062 7148349 -182131205 + AluSx SINE Alu 11 294 -18 1634 136 3 103 chr6 7148704 7149035 -182130519 + AluJb SINE Alu 5 302 -10 3437 183 27 0 chr6 7149230 7149860 -182129694 + L1MB3 LINE L1 5537 6183 0 792 107 0 0 chr6 7150731 7150834 -182128720 + AluJb SINE Alu 3 105 -207 1707 202 44 41 chr6 7151057 7151444 -182128110 - MLT1B LTR MaLR -2 388 1 417 315 43 16 chr6 7151478 7151662 -182127892 - MIR SINE MIR -46 216 28 2034 126 0 16 chr6 7152085 7152402 -182127152 - AluJb SINE Alu 0 312 1 272 250 0 0 chr6 7152428 7152504 -182127050 + A-rich Low_complexity Low_complexity 1 76 0 436 252 10 19 chr6 7153187 7153290 -182126264 + MER81 DNA DNA 11 112 -2 864 246 61 36 chr6 7154323 7154600 -182124954 + L1ME2 LINE L1 5758 6041 -123 840 211 0 0 chr6 7154602 7154763 -182124791 + FRAM SINE Alu 1 160 -16 354 216 82 21 chr6 7154763 7154860 -182124694 + L1ME2 LINE L1 6034 6136 -28 1721 167 0 26 chr6 7154873 7155178 -182124376 - AluSx SINE Alu -15 297 1 1638 164 3 7 chr6 7155225 7155511 -182124043 + AluJb SINE Alu 3 287 -25 209 58 77 0 chr6 7155511 7155563 -182123991 + (TA)n Simple_repeat Simple_repeat 1 56 0 312 361 19 0 chr6 7155597 7155705 -182123849 + L1MC4 LINE L1 6617 6726 -1316 212 271 0 0 chr6 7155828 7155876 -182123678 - L2 LINE L2 -35 3278 3231 347 338 136 49 chr6 7156206 7156700 -182122854 - L2 LINE L2 -534 2780 2244 199 296 0 19 chr6 7156826 7156880 -182122674 + MIR3 SINE MIR 13 65 -143 833 126 8 0 chr6 7157260 7157379 -182122175 + AluJb SINE Alu 5 124 -188 364 215 161 11 chr6 7157384 7157477 -182122077 - MER45 DNA AcHobo -933 107 1 560 322 70 13 chr6 7157505 7157735 -182121819 + MIR SINE MIR 12 254 -8 335 328 107 0 chr6 7158896 7159027 -182120527 + LTR67 LTR ERVL 40 184 -373 2018 114 17 0 chr6 7159690 7159989 -182119565 + AluSg SINE Alu 1 304 -6 1224 206 24 14 chr6 7160018 7160309 -182119245 - AluJo SINE Alu -17 295 2 207 0 0 0 chr6 7160373 7160396 -182119158 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1903 88 84 0 chr6 7160398 7160671 -182118883 - AluSg SINE Alu -14 296 1 366 267 64 97 chr6 7160681 7161026 -182118528 + L1M4 LINE L1 3073 3402 -2744 1624 167 10 23 chr6 7161050 7161330 -182118224 + AluJb SINE Alu 1 278 -34 183 42 0 0 chr6 7161330 7161354 -182118200 + (CA)n Simple_repeat Simple_repeat 1 24 0 1624 167 10 23 chr6 7161354 7161378 -182118176 + AluJb SINE Alu 278 301 -11 2165 104 0 0 chr6 7161388 7161725 -182117829 + AluSx SINE Alu 1 337 0 1746 150 14 10 chr6 7161962 7162255 -182117299 - AluSx SINE Alu -18 294 1 338 362 107 31 chr6 7162267 7162463 -182117091 + L1MC4 LINE L1 6493 6703 -1339 283 190 0 35 chr6 7162465 7162523 -182117031 + L1MC5 LINE L1 6790 6845 -1116 1655 165 3 10 chr6 7162523 7162658 -182116896 + AluJo SINE Alu 1 135 -177 1596 136 0 4 chr6 7162658 7162908 -182116646 + AluSx SINE Alu 50 298 -14 1655 165 3 10 chr6 7162908 7163063 -182116491 + AluJo SINE Alu 135 289 -23 27 29 0 0 chr6 7163063 7163097 -182116457 + AT_rich Low_complexity Low_complexity 1 34 0 2057 118 3 3 chr6 7163104 7163408 -182116146 + AluSc SINE Alu 1 304 -5 312 194 0 133 chr6 7163409 7163507 -182116047 + L1MC4 LINE L1 6837 7002 -1040 2158 113 0 10 chr6 7163509 7163820 -182115734 + AluSx SINE Alu 1 308 -4 514 202 54 64 chr6 7163903 7164106 -182115448 + L1MC5 LINE L1 6959 7159 -802 1622 173 11 14 chr6 7164107 7164419 -182115135 + AluJo SINE Alu 1 311 0 521 158 0 98 chr6 7164431 7164564 -182114990 + L1MC5 LINE L1 7145 7264 -697 424 221 44 18 chr6 7164561 7164674 -182114880 - L1MC4a LINE L1 -422 7386 7271 * 2056 107 0 10 chr6 7164721 7165031 -182114523 + AluSc SINE Alu 1 307 -2 432 296 124 5 chr6 7165158 7165344 -182114210 + LTR67 LTR ERVL 350 557 0 327 25 0 0 chr6 7165364 7165404 -182114150 + (TG)n Simple_repeat Simple_repeat 1 40 0 1549 171 11 11 chr6 7165678 7165965 -182113589 + AluJo SINE Alu 1 287 -25 207 0 0 0 chr6 7166104 7166127 -182113427 + (TTA)n Simple_repeat Simple_repeat 2 24 0 821 120 8 0 chr6 7166141 7166258 -182113296 - FLAM_C SINE Alu -15 118 1 765 289 125 14 chr6 7166413 7166780 -182112774 + MLT1I LTR MaLR 1 408 -1 346 322 29 47 chr6 7166782 7166953 -182112601 - MIR SINE MIR -16 246 79 362 237 0 13 chr6 7167162 7167238 -182112316 + Tigger5 DNA MER2_type 1 75 -2248 258 192 19 0 chr6 7167255 7167307 -182112247 - Tigger5 DNA MER2_type -20 2303 2251 1795 155 14 3 chr6 7167321 7167618 -182111936 + AluJb SINE Alu 2 301 -11 426 167 0 0 chr6 7167620 7167686 -182111868 + Tigger5 DNA MER2_type 2258 2323 0 255 240 154 23 chr6 7167842 7167992 -182111562 + MIR SINE MIR 23 201 -61 1400 177 108 63 chr6 7167992 7168371 -182111183 + MSTD LTR MaLR 1 396 0 255 240 154 23 chr6 7168371 7168390 -182111164 + MIR SINE MIR 201 216 -46 270 249 13 81 chr6 7169022 7169143 -182110411 - MIR SINE MIR -84 124 20 1411 227 31 68 chr6 7169152 7169462 -182110092 + MER58B DNA MER1_type 3 300 -2120 849 158 0 23 chr6 7169462 7169595 -182109959 - FLAM_C SINE Alu -3 130 1 1411 227 31 68 chr6 7169595 7169636 -182109918 + MER58B DNA MER1_type 300 341 0 232 267 0 17 chr6 7169666 7169726 -182109828 - MIR SINE MIR -122 140 82 485 266 5 65 chr6 7170516 7170700 -182108854 + L1MC4a LINE L1 7636 7808 0 2001 139 0 0 chr6 7170701 7171003 -182108551 + AluSx SINE Alu 1 302 -10 850 225 5 27 chr6 7171007 7171194 -182108360 + AluJb SINE Alu 130 312 0 411 169 13 0 chr6 7171199 7171276 -182108278 + MER116 DNA Mariner 2 79 -1 2207 82 0 0 chr6 7171893 7172173 -182107381 + AluSp SINE Alu 1 280 -33 393 75 0 0 chr6 7172179 7172232 -182107322 + (GGGA)n Simple_repeat Simple_repeat 4 56 0 1054 211 30 35 chr6 7172662 7172768 -182106786 - MLT1C LTR MaLR -16 451 346 592 229 91 108 chr6 7172768 7173174 -182106380 - MER93a LTR ERV1 -3 399 1 1054 211 30 35 chr6 7173174 7173299 -182106255 - MLT1C LTR MaLR -121 346 221 1017 112 0 0 chr6 7173312 7173455 -182106099 - FLAM_C SINE Alu 0 143 1 1693 154 6 26 chr6 7173457 7173769 -182105785 - AluJb SINE Alu -6 306 1 1326 133 43 0 chr6 7173769 7173980 -182105574 - MLT1C LTR MaLR -233 234 15 247 392 8 0 chr6 7174240 7174365 -182105189 + MIR3 SINE MIR 30 155 -53 183 148 0 0 chr6 7175538 7175565 -182103989 - MIR SINE MIR -99 109 83 221 284 153 9 chr6 7175629 7175775 -182103779 + MIR SINE MIR 5 140 -68 739 187 0 8 chr6 7176612 7176746 -182102808 + FLAM_C SINE Alu 1 133 0 318 284 14 85 chr6 7176921 7177010 -182102544 + L1MB3 LINE L1 5562 5639 -482 848 219 0 0 chr6 7177010 7177179 -182102375 - L1PA16 LINE L1 -17 6149 5981 318 284 14 85 chr6 7177179 7177230 -182102324 + L1MB3 LINE L1 5639 5692 -429 293 240 10 39 chr6 7177266 7177370 -182102184 + L1ME4a LINE L1 5990 6090 -31 2457 162 18 16 chr6 7177370 7177820 -182101734 + L1MB3 LINE L1 5733 6183 0 1949 116 24 10 chr6 7177895 7178187 -182101367 + AluSx SINE Alu 1 296 -16 1574 150 14 31 chr6 7178651 7178937 -182100617 + AluJo SINE Alu 1 281 -31 1584 174 9 43 chr6 7178938 7179260 -182100294 + AluJo SINE Alu 1 311 -1 2164 119 0 0 chr6 7179288 7179599 -182099955 + AluSx SINE Alu 1 311 -1 1513 140 17 0 chr6 7179599 7179835 -182099719 - L1MB2 LINE L1 -251 5920 5681 229 240 200 30 chr6 7179927 7180027 -182099527 - MIR3 SINE MIR -3 205 89 1350 133 195 8 chr6 7181188 7181444 -182098110 + AluSg1 SINE Alu 1 304 -5 1534 159 19 48 chr6 7181464 7181778 -182097776 + AluJb SINE Alu 6 310 -2 303 203 0 0 chr6 7181793 7181862 -182097692 + GA-rich Low_complexity Low_complexity 4 72 0 543 148 218 0 chr6 7181872 7181973 -182097581 + AluJb SINE Alu 2 124 -188 22 35 0 0 chr6 7182177 7182206 -182097348 + AT_rich Low_complexity Low_complexity 1 29 0 2058 120 7 3 chr6 7182577 7182876 -182096678 + AluSq SINE Alu 1 300 -13 1617 131 3 125 chr6 7183459 7183803 -182095751 + AluJo SINE Alu 1 302 0 186 43 0 0 chr6 7183821 7183844 -182095710 + (TG)n Simple_repeat Simple_repeat 2 24 0 338 253 48 0 chr6 7183944 7184027 -182095527 - L1MC4 LINE L1 -1342 6700 6614 317 348 0 0 chr6 7183949 7184038 -182095516 + L1MC4 LINE L1 6614 6702 -1340 * 1663 155 7 4 chr6 7185182 7185460 -182094094 + AluJo SINE Alu 12 290 -22 24 0 0 0 chr6 7185460 7185484 -182094070 + AT_rich Low_complexity Low_complexity 1 24 0 3144 65 5 0 chr6 7185769 7186170 -182093384 - L1PA8A LINE L1 -27 6104 5702 22 0 0 0 chr6 7186436 7186458 -182093096 + AT_rich Low_complexity Low_complexity 1 22 0 2016 114 7 0 chr6 7186696 7186995 -182092559 + AluY SINE Alu 1 301 -10 2270 63 0 26 chr6 7187599 7187901 -182091653 + AluY SINE Alu 1 294 -17 197 302 143 0 chr6 7188335 7188398 -182091156 - L2 LINE L2 -3 3310 3239 54 73 0 0 chr6 7188464 7188574 -182090980 + AT_rich Low_complexity Low_complexity 1 110 0 1607 159 4 7 chr6 7188595 7188871 -182090683 - AluJo SINE Alu -17 295 21 2254 107 3 0 chr6 7188929 7189239 -182090315 - AluSx SINE Alu -1 311 1 608 202 0 0 chr6 7189606 7189705 -182089849 - AluJ/FLAM SINE Alu -212 100 2 659 237 31 36 chr6 7190024 7190240 -182089314 + MIR SINE MIR 46 261 -1 1964 118 37 0 chr6 7190245 7190542 -182089012 - AluSx SINE Alu -4 308 1 610 330 172 12 chr6 7190583 7191171 -182088383 + L2 LINE L2 1965 2646 -668 847 122 0 0 chr6 7191598 7191713 -182087841 + AluSq/x SINE Alu 10 124 -188 3749 156 30 66 chr6 7191714 7192221 -182087333 + L1MB8 LINE L1 5308 5832 -346 1903 99 102 0 chr6 7192221 7192504 -182087050 + AluSx SINE Alu 1 312 0 3749 156 30 66 chr6 7192504 7192596 -182086958 + L1MB8 LINE L1 5832 5926 -252 1792 150 20 3 chr6 7192596 7192890 -182086664 - AluJb SINE Alu -13 299 1 3749 156 30 66 chr6 7192890 7193096 -182086458 + L1MB8 LINE L1 5926 6085 -93 531 118 0 0 chr6 7193308 7193393 -182086161 + (TA)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr6 7193450 7193472 -182086082 + AT_rich Low_complexity Low_complexity 1 22 0 1430 166 88 3 chr6 7193490 7193774 -182085780 + AluJb SINE Alu 1 308 -4 503 318 72 40 chr6 7193778 7194124 -182085430 + L1MC/D LINE L1 3286 3642 -2504 185 150 0 25 chr6 7194163 7194203 -182085351 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 776 145 8 23 chr6 7194257 7194388 -182085166 - AluSp/q SINE Alu -14 299 171 2182 103 0 0 chr6 7194388 7194689 -182084865 + AluSq SINE Alu 5 305 -8 461 261 71 69 chr6 7194696 7194724 -182084830 + L1MC/D LINE L1 5352 5378 -743 342 67 0 0 chr6 7194724 7194769 -182084785 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 461 261 71 69 chr6 7194769 7195061 -182084493 + L1MC/D LINE L1 5378 5672 -449 712 235 34 0 chr6 7195078 7195227 -182084327 - MLT1E1 LTR MaLR -7 647 494 846 143 0 0 chr6 7195259 7195385 -182084169 - FLAM_C SINE Alu -3 130 5 353 141 3 7 chr6 7195385 7195400 -182084154 - Alu SINE Alu -3 298 284 2172 105 0 10 chr6 7195400 7195706 -182083848 - AluSx SINE Alu -9 303 1 353 141 3 7 chr6 7195706 7195763 -182083791 - Alu SINE Alu -17 284 243 622 248 90 85 chr6 7195763 7196199 -182083355 - MLT1E LTR MaLR -136 518 11 1433 158 0 0 chr6 7196199 7196420 -182083134 + AluJo SINE Alu 1 221 -91 341 93 0 0 chr6 7196585 7196628 -182082926 + Alu SINE Alu 235 277 -25 2164 110 3 0 chr6 7196632 7196940 -182082614 - AluSx SINE Alu -3 309 1 273 254 61 43 chr6 7197026 7197211 -182082343 + L1MC/D LINE L1 5723 5829 -530 671 188 8 16 chr6 7197581 7197822 -182081732 + AluJ SINE Alu 2 133 -169 386 338 33 7 chr6 7197956 7198107 -182081447 + L2 LINE L2 3147 3301 -12 346 308 62 15 chr6 7198157 7198287 -182081267 + L2 LINE L2 2910 3045 -227 2132 107 3 0 chr6 7198308 7198599 -182080955 + AluSg SINE Alu 1 292 -18 22419 99 17 13 chr6 7198737 7201974 -182077580 + L1PA6 LINE L1 11 3261 -2885 7199 50 6 2 chr6 7201974 7203364 -182076190 + L1PA6 LINE L1 4762 6154 0 217 331 123 13 chr6 7203542 7203696 -182075858 + L2 LINE L2 3102 3272 0 917 179 6 0 chr6 7204346 7204514 -182075040 + AluJ SINE Alu 134 302 -10 2126 109 0 26 chr6 7204540 7204852 -182074702 + AluSq SINE Alu 1 304 -9 1670 172 34 0 chr6 7205622 7205918 -182073636 + AluJb SINE Alu 1 306 -6 207 69 0 0 chr6 7206494 7206523 -182073031 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr6 7206638 7206660 -182072894 + (CA)n Simple_repeat Simple_repeat 2 23 0 1813 162 0 7 chr6 7206791 7207088 -182072466 + AluJo SINE Alu 1 295 -17 2100 88 0 11 chr6 7207127 7207411 -182072143 - AluSx SINE Alu -17 295 15 227 206 0 48 chr6 7207534 7207597 -182071957 + AluJo SINE Alu 75 134 -168 587 209 124 0 chr6 7207664 7207793 -182071761 - MIR SINE MIR 0 262 118 759 122 0 0 chr6 7207810 7207917 -182071637 + FRAM SINE Alu 65 171 -5 333 304 0 0 chr6 7207918 7207997 -182071557 - MIR SINE MIR -182 80 2 1424 173 24 34 chr6 7208800 7209095 -182070459 - AluJb SINE Alu -9 303 12 195 179 0 26 chr6 7209208 7209247 -182070307 + L2 LINE L2 3276 3313 0 540 304 207 52 chr6 7209275 7209312 -182070242 - L2 LINE L2 -3 3269 3239 2280 157 171 28 chr6 7209312 7209808 -182069746 + MLT1F1 LTR MaLR 1 567 0 540 304 207 52 chr6 7209808 7210966 -182068588 - L2 LINE L2 -33 3239 1873 2229 94 0 0 chr6 7210990 7211287 -182068267 - AluY SINE Alu -14 297 1 2308 104 0 0 chr6 7211325 7211634 -182067920 - AluSg SINE Alu -1 309 1 431 269 134 7 chr6 7212042 7212191 -182067363 + MIR SINE MIR 75 242 -20 187 211 18 88 chr6 7212161 7212218 -182067336 + L2 LINE L2 3217 3269 -3 * 201 39 0 0 chr6 7212295 7212321 -182067233 + (TG)n Simple_repeat Simple_repeat 2 27 0 271 212 200 0 chr6 7212324 7212409 -182067145 - U13 snRNA snRNA 0 104 3 1971 84 22 0 chr6 7212531 7212831 -182066723 - AluSc SINE Alu 0 306 1 198 0 0 0 chr6 7212831 7212853 -182066701 + (TTTTA)n Simple_repeat Simple_repeat 1 22 0 1693 149 0 24 chr6 7212853 7213142 -182066412 - AluJo SINE Alu -30 282 1 195 218 55 18 chr6 7213175 7213230 -182066324 + L2 LINE L2 3216 3272 0 215 272 88 40 chr6 7214267 7214392 -182065162 - MIR SINE MIR -61 147 17 231 61 0 0 chr6 7215392 7215425 -182064129 + (CA)n Simple_repeat Simple_repeat 2 34 0 2130 98 23 10 chr6 7215480 7215786 -182063768 + AluSx SINE Alu 2 311 -1 871 104 0 0 chr6 7216153 7216268 -182063286 + FLAM_C SINE Alu 4 118 -15 2292 93 3 7 chr6 7216557 7216858 -182062696 + AluSx SINE Alu 1 300 -12 553 232 66 13 chr6 7217508 7217659 -182061895 + MIR SINE MIR 28 186 -76 207 0 0 0 chr6 7217884 7217907 -182061647 + (A)n Simple_repeat Simple_repeat 1 23 0 219 69 0 0 chr6 7218299 7218328 -182061226 + (GA)n Simple_repeat Simple_repeat 2 30 0 1176 129 0 12 chr6 7218436 7218606 -182060948 + AluSg/x SINE Alu 121 288 -24 723 189 115 80 chr6 7219537 7219849 -182059705 - L1MC5 LINE L1 -30 7931 7609 382 335 37 12 chr6 7220122 7220283 -182059271 + MIR3 SINE MIR 21 185 -23 279 399 43 6 chr6 7220458 7220621 -182058933 + L2 LINE L2 3104 3272 0 189 254 14 84 chr6 7220637 7220708 -182058846 + MIR SINE MIR 141 206 -56 1718 179 10 23 chr6 7220834 7221142 -182058412 - AluJo SINE Alu -8 304 1 2347 94 0 3 chr6 7221193 7221492 -182058062 - AluSp SINE Alu -15 298 1 349 200 19 150 chr6 7222007 7222167 -182057387 - MER103 DNA DNA -11 155 17 358 133 51 43 chr6 7222169 7222295 -182057259 - HsTC2 DNA Tc2 -44 1854 9 21 0 0 0 chr6 7223573 7223594 -182055960 + GC_rich Low_complexity Low_complexity 1 21 0 34 55 0 0 chr6 7223718 7223773 -182055781 + GC_rich Low_complexity Low_complexity 1 55 0 189 107 0 0 chr6 7224315 7224343 -182055211 + (CGGGGG)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr6 7224456 7224482 -182055072 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2336 96 0 0 chr6 7225819 7226122 -182053432 + AluY SINE Alu 1 303 -8 736 161 0 58 chr6 7226173 7226310 -182053244 - FLAM_C SINE Alu -13 130 2 332 137 0 0 chr6 7227116 7227167 -182052387 - FAM SINE Alu -10 165 115 2440 94 3 0 chr6 7227167 7227475 -182052079 - AluSp SINE Alu -4 309 1 2155 123 0 7 chr6 7227517 7227825 -182051729 + AluSx SINE Alu 1 306 -6 2487 61 0 0 chr6 7227874 7228170 -182051384 + AluY SINE Alu 1 296 -15 200 216 0 0 chr6 7228456 7228493 -182051061 + GA-rich Low_complexity Low_complexity 2 38 0 629 174 41 8 chr6 7229361 7229482 -182050072 + FLAM_C SINE Alu 1 125 -8 44 63 0 0 chr6 7229482 7229561 -182049993 + AT_rich Low_complexity Low_complexity 1 79 0 195 345 17 17 chr6 7229687 7229746 -182049808 + MER5A DNA MER1_type 68 126 -63 2352 92 0 7 chr6 7229746 7230049 -182049505 - AluSc SINE Alu -8 301 1 195 345 17 17 chr6 7230049 7230108 -182049446 + MER5A DNA MER1_type 125 186 -3 594 144 0 0 chr6 7231167 7231279 -182048275 + AluSg/x SINE Alu 195 306 0 504 103 4 0 chr6 7231279 7231356 -182048198 - L1MB2 LINE L1 -32 6136 6058 2176 114 0 0 chr6 7231624 7231914 -182047640 + AluSg SINE Alu 1 290 -20 234 208 0 0 chr6 7231914 7231962 -182047592 + AluJ/monomer SINE Alu 1 48 -251 2192 129 0 0 chr6 7232006 7232308 -182047246 - AluSx SINE Alu -10 302 1 2058 118 0 14 chr6 7233161 7233488 -182046066 - AluSx SINE Alu 0 323 1 759 155 0 0 chr6 7233858 7233974 -182045580 + FLAM_C SINE Alu 1 116 -17 356 171 0 85 chr6 7235077 7235159 -182044395 + Charlie7 DNA MER1_type 37 111 -2501 786 166 59 130 chr6 7235162 7235236 -182044318 - L1MB4 LINE L1 -2 6178 6100 2396 80 0 3 chr6 7235236 7235525 -182044029 - AluSq SINE Alu -25 288 1 786 166 59 130 chr6 7235525 7235703 -182043851 - L1MB4 LINE L1 -80 6100 5944 752 183 0 0 chr6 7235716 7235831 -182043723 - AluSq/x SINE Alu -197 116 2 1436 135 35 45 chr6 7235832 7236120 -182043434 - L1MB4 LINE L1 -564 5610 5326 1976 150 3 0 chr6 7236124 7236460 -182043094 + AluSx SINE Alu 1 337 0 250 222 30 12 chr6 7236829 7236904 -182042650 + AluS SINE Alu 1 61 -238 1289 102 19 10 chr6 7237005 7237210 -182042344 + AluY SINE Alu 82 288 -23 2544 55 0 0 chr6 7237328 7237638 -182041916 - AluY SINE Alu -1 310 1 2540 71 0 7 chr6 7237711 7238020 -182041534 - AluSg SINE Alu -3 307 1 2422 71 0 16 chr6 7238205 7238516 -182041038 + AluY SINE Alu 1 306 -5 2373 92 0 3 chr6 7238673 7238978 -182040576 + AluSq SINE Alu 1 304 -9 26 69 0 14 chr6 7239018 7239035 -182040519 + AT_rich Low_complexity Low_complexity 1 17 -54 2241 104 0 0 chr6 7239035 7239322 -182040232 - AluSg SINE Alu -23 287 1 26 69 0 14 chr6 7239322 7239376 -182040178 + AT_rich Low_complexity Low_complexity 17 71 0 1761 129 10 34 chr6 7239456 7239750 -182039804 - AluJo SINE Alu -3 309 23 1784 129 86 4 chr6 7239769 7240047 -182039507 - AluSq SINE Alu -12 301 1 893 158 0 0 chr6 7240585 7240718 -182038836 + FLAM_C SINE Alu 1 133 0 2116 160 0 0 chr6 7241014 7241321 -182038233 - AluJb SINE Alu -5 307 1 2072 120 6 19 chr6 7241341 7241657 -182037897 - AluSq SINE Alu 0 313 2 930 294 59 15 chr6 7241667 7242075 -182037479 - L1ME3A LINE L1 -220 5950 5525 2324 109 0 0 chr6 7242081 7242385 -182037169 - AluSx SINE Alu -8 304 1 558 156 45 78 chr6 7242413 7242477 -182037077 - L1MA9 LINE L1 0 6312 6247 2155 134 0 0 chr6 7242477 7242782 -182036772 + AluJb SINE Alu 1 305 -7 558 156 45 78 chr6 7242782 7242871 -182036683 - L1MA9 LINE L1 -65 6247 6164 1605 198 7 20 chr6 7242889 7243187 -182036367 + AluJo SINE Alu 1 294 -18 653 242 85 42 chr6 7243191 7243451 -182036103 - L1ME3A LINE L1 -633 5531 5261 259 159 14 43 chr6 7243513 7243582 -182035972 - L1ME3A LINE L1 -896 5250 5184 2442 85 3 0 chr6 7243633 7243939 -182035615 - AluSx SINE Alu -5 307 1 708 285 79 65 chr6 7243939 7244571 -182034983 - L1ME3A LINE L1 -976 5170 4530 576 210 46 149 chr6 7244581 7244843 -182034711 + MIR SINE MIR 2 236 -26 2143 116 6 61 chr6 7244943 7245289 -182034265 - MER7A DNA MER2_type 0 346 22 25 31 0 0 chr6 7245394 7245426 -182034128 + AT_rich Low_complexity Low_complexity 1 32 0 2034 120 0 3 chr6 7245571 7245884 -182033670 + AluSq SINE Alu 1 312 0 288 232 0 14 chr6 7246263 7246332 -182033222 + FLAM_A SINE Alu 66 133 0 261 83 0 0 chr6 7246816 7246852 -182032702 + (T)n Simple_repeat Simple_repeat 1 36 0 2311 88 3 3 chr6 7247087 7247381 -182032173 - AluSc SINE Alu -15 294 1 1061 103 0 0 chr6 7247381 7247517 -182032037 - AluSq/x SINE Alu -177 136 1 735 162 0 0 chr6 7247559 7247676 -182031878 + FLAM_A SINE Alu 1 117 -16 334 0 0 42 chr6 7247684 7247732 -182031822 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 416 224 269 6 chr6 7247733 7247889 -182031665 - MIR SINE MIR -4 258 62 322 283 38 38 chr6 7248230 7248389 -182031165 - MIR SINE MIR -25 237 79 2333 93 0 0 chr6 7248886 7249177 -182030377 - AluY SINE Alu -20 291 1 302 296 152 8 chr6 7249216 7249348 -182030206 - MIR3 SINE MIR -28 180 30 736 121 129 0 chr6 7250017 7250133 -182029421 + FLAM_A SINE Alu 1 131 -2 543 136 0 0 chr6 7250190 7250278 -182029276 - MER2 DNA MER2_type -135 210 123 904 141 0 15 chr6 7250279 7250414 -182029140 + FLAM_C SINE Alu 1 133 0 726 212 8 0 chr6 7250460 7250592 -182028962 - MER2 DNA MER2_type -210 135 3 326 222 25 0 chr6 7250692 7250773 -182028781 - L1ME3A LINE L1 -9 6161 6079 401 202 103 21 chr6 7250796 7250939 -182028615 + MIR SINE MIR 45 201 -59 2590 58 0 7 chr6 7251007 7251316 -182028238 + AluY SINE Alu 2 308 -3 770 148 0 16 chr6 7251526 7251648 -182027906 + FLAM_C SINE Alu 3 122 -11 493 189 13 26 chr6 7251669 7251822 -182027732 + GA-rich Low_complexity Low_complexity 3 153 0 2281 115 0 0 chr6 7251858 7252163 -182027391 + AluSx SINE Alu 1 305 -7 1968 122 29 0 chr6 7252456 7252735 -182026819 - AluSx SINE Alu -25 287 1 1344 101 0 0 chr6 7252740 7252938 -182026616 - L1MA5 LINE L1 -2 6298 6101 314 187 67 13 chr6 7252949 7253024 -182026530 - L1MA5A LINE L1 -172 6125 6047 2345 88 13 0 chr6 7253493 7253801 -182025753 + AluSx SINE Alu 1 312 0 1266 177 72 16 chr6 7254005 7254254 -182025300 + AluJo SINE Alu 33 295 -17 2391 97 3 0 chr6 7254328 7254639 -182024915 + AluSx SINE Alu 1 312 0 436 108 14 14 chr6 7254639 7254713 -182024841 + Charlie1 DNA MER1_type 2688 2761 0 207 352 46 19 chr6 7254873 7254981 -182024573 - L2 LINE L2 -18 3295 3185 410 324 77 6 chr6 7255077 7255247 -182024307 - MIR SINE MIR -26 236 55 2207 111 10 3 chr6 7256030 7256336 -182023218 - AluSx SINE Alu -4 308 1 2335 86 0 0 chr6 7256636 7256928 -182022626 + AluY SINE Alu 1 292 -19 2310 98 0 0 chr6 7256941 7257236 -182022318 + AluSx SINE Alu 3 297 -15 266 211 178 0 chr6 7257875 7257965 -182021589 + MIR SINE MIR 87 192 -70 2396 73 10 0 chr6 7258110 7258410 -182021144 + AluSp SINE Alu 1 303 -10 288 249 24 133 chr6 7258874 7259039 -182020515 + MIR3 SINE MIR 33 179 -29 4376 139 16 22 chr6 7260718 7261486 -182018068 - L1MB3 LINE L1 -7 6176 5414 351 238 0 12 chr6 7261950 7262030 -182017524 + MIR SINE MIR 20 98 -164 310 334 30 30 chr6 7262114 7262413 -182017141 - L1M4 LINE L1 -1898 4248 3950 1295 117 20 101 chr6 7262905 7263069 -182016485 + MER30 DNA MER1_type 3 143 -87 2280 74 7 3 chr6 7263069 7263387 -182016167 - AluSx SINE Alu 0 319 1 1295 117 20 101 chr6 7263387 7263469 -182016085 + MER30 DNA MER1_type 143 230 0 21 0 0 0 chr6 7263517 7263538 -182016016 + AT_rich Low_complexity Low_complexity 1 21 0 942 132 0 21 chr6 7263567 7263711 -182015843 + AluJo SINE Alu 1 141 -171 2255 104 3 19 chr6 7263711 7264027 -182015527 + AluSx SINE Alu 1 311 -1 300 223 84 62 chr6 7264033 7264250 -182015304 - L1ME4a LINE L1 -218 5903 5681 191 88 29 0 chr6 7264324 7264358 -182015196 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1891 80 13 0 chr6 7264368 7264607 -182014947 - AluSp SINE Alu -58 255 14 2502 65 0 0 chr6 7264622 7264932 -182014622 - AluY SINE Alu -1 310 1 336 153 0 19 chr6 7264946 7265011 -182014543 + Alu SINE Alu 1 47 -255 273 236 149 63 chr6 7265014 7265188 -182014366 - L1ME4a LINE L1 -656 5465 5277 524 285 69 69 chr6 7265189 7265338 -182014216 + MIR SINE MIR 3 151 -111 2216 107 0 0 chr6 7265338 7265636 -182013918 + AluSx SINE Alu 1 298 -14 1908 109 39 3 chr6 7265639 7265923 -182013631 + AluSc SINE Alu 1 294 -15 524 285 69 69 chr6 7265923 7266015 -182013539 + MIR SINE MIR 152 248 -14 415 287 137 92 chr6 7266054 7266235 -182013319 - L1ME4a LINE L1 -912 5234 5063 2334 83 0 10 chr6 7266235 7266548 -182013006 - AluSq SINE Alu -3 310 1 415 287 137 92 chr6 7266548 7266611 -182012943 - L1ME4a LINE L1 -1083 5063 5004 1691 167 3 7 chr6 7266611 7266774 -182012780 - AluJb SINE Alu -20 292 130 348 24 0 0 chr6 7266774 7266815 -182012739 + (TTG)n Simple_repeat Simple_repeat 1 41 0 1681 135 0 19 chr6 7266815 7267075 -182012479 - AluSx SINE Alu -31 281 27 1691 167 3 7 chr6 7267075 7267203 -182012351 - AluJb SINE Alu -180 132 1 2215 103 7 3 chr6 7267212 7267522 -182012032 - AluSq SINE Alu -2 311 1 415 287 137 92 chr6 7267522 7267691 -182011863 - L1ME4a LINE L1 -1149 4997 4791 379 323 65 8 chr6 7267875 7267999 -182011555 + MIR3 SINE MIR 14 144 -64 2012 115 0 35 chr6 7268112 7268425 -182011129 + AluSx SINE Alu 1 302 -10 1432 141 33 21 chr6 7268524 7268766 -182010788 - L1PB4 LINE L1 0 6156 5912 21 0 0 0 chr6 7268773 7268794 -182010760 + AT_rich Low_complexity Low_complexity 1 21 0 1743 175 0 0 chr6 7268802 7269088 -182010466 + AluJo SINE Alu 6 291 -21 193 146 42 0 chr6 7269112 7269160 -182010394 + (TA)n Simple_repeat Simple_repeat 2 51 0 200 252 65 9 chr6 7269161 7269268 -182010286 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 230 150 25 25 chr6 7269282 7269362 -182010192 + (TA)n Simple_repeat Simple_repeat 1 80 0 2075 107 10 3 chr6 7269387 7269686 -182009868 - AluSc SINE Alu -8 301 1 1604 150 42 71 chr6 7269764 7269908 -182009646 - MLT1B LTR MaLR -46 344 197 2004 131 0 10 chr6 7269908 7270222 -182009332 - AluY SINE Alu 0 311 1 1604 150 42 71 chr6 7270222 7270337 -182009217 - MLT1B LTR MaLR -193 197 80 1725 109 94 0 chr6 7270337 7270593 -182008961 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr6 7270593 7270614 -182008940 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 1604 150 42 71 chr6 7270614 7270706 -182008848 - MLT1B LTR MaLR -308 82 1 742 173 8 24 chr6 7271706 7271833 -182007721 - FLAM_A SINE Alu -8 125 1 1238 151 18 14 chr6 7271864 7272082 -182007472 - MER20 DNA MER1_type 0 219 1 1407 78 0 0 chr6 7272416 7272595 -182006959 - AluSg/x SINE Alu -7 305 127 539 294 51 25 chr6 7272670 7272905 -182006649 + MIR SINE MIR 20 260 -2 1024 159 53 39 chr6 7273104 7273311 -182006243 - L1PB4 LINE L1 0 6156 5947 279 303 34 51 chr6 7274079 7274313 -182005241 + L2 LINE L2 2810 3039 -233 1943 89 78 0 chr6 7274923 7275204 -182004350 + AluSp SINE Alu 1 303 -10 1552 118 4 0 chr6 7275204 7275432 -182004122 + AluSg/x SINE Alu 80 309 -1 2159 118 3 0 chr6 7275463 7275769 -182003785 + AluSx SINE Alu 2 308 -4 22 0 0 0 chr6 7275805 7275827 -182003727 + AT_rich Low_complexity Low_complexity 1 22 0 40 49 0 0 chr6 7275882 7275943 -182003611 + AT_rich Low_complexity Low_complexity 1 61 0 301 235 37 99 chr6 7275943 7276105 -182003449 + L1MCa LINE L1 1941 2092 -4334 743 81 24 16 chr6 7276250 7276373 -182003181 - L1MB8 LINE L1 -9 6169 6046 899 209 0 0 chr6 7276388 7276541 -182003013 - FRAM SINE Alu -13 153 1 1248 138 4 43 chr6 7276545 7276776 -182002778 - AluSc SINE Alu -4 305 84 1868 116 56 3 chr6 7276776 7277061 -182002493 - AluSq SINE Alu -13 300 1 200 180 34 22 chr6 7277116 7277205 -182002349 + GA-rich Low_complexity Low_complexity 4 93 0 3962 138 14 2 chr6 7277220 7277843 -182001711 - L1MB7 LINE L1 -129 6055 5425 1678 189 3 0 chr6 7277955 7278261 -182001293 + AluJo SINE Alu 1 307 -5 22 0 0 0 chr6 7279164 7279186 -182000368 + GC_rich Low_complexity Low_complexity 1 22 0 922 199 8 34 chr6 7280285 7280552 -181999002 - AluSq SINE Alu -27 286 27 30 45 0 0 chr6 7280801 7280845 -181998709 + GC_rich Low_complexity Low_complexity 1 44 0 204 263 0 0 chr6 7280958 7281015 -181998539 + G-rich Low_complexity Low_complexity 6 62 0 255 61 0 0 chr6 7281476 7281509 -181998045 + (TCC)n Simple_repeat Simple_repeat 1 33 0 29 60 0 0 chr6 7281962 7282012 -181997542 + GC_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr6 7282243 7282278 -181997276 + GC_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr6 7282444 7282466 -181997088 + GC_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr6 7283639 7283673 -181995881 + (TG)n Simple_repeat Simple_repeat 2 35 0 231 244 0 0 chr6 7284316 7284361 -181995193 - L2 LINE L2 -10 3262 3218 21 0 0 0 chr6 7285297 7285318 -181994236 + AT_rich Low_complexity Low_complexity 1 21 0 184 194 0 0 chr6 7287041 7287072 -181992482 + MIR SINE MIR 159 189 -73 1264 138 10 0 chr6 7287310 7287506 -181992048 - AluSg/x SINE Alu -29 283 86 662 181 132 64 chr6 7287562 7287766 -181991788 + MER20 DNA MER1_type 2 219 0 289 369 114 29 chr6 7288857 7289453 -181990101 + L2 LINE L2 2258 2904 -410 2261 78 16 16 chr6 7290565 7290874 -181988680 - AluSq SINE Alu 0 313 5 675 159 0 103 chr6 7290907 7291052 -181988502 - FLAM_C SINE Alu -2 131 2 25 31 0 0 chr6 7291136 7291168 -181988386 + AT_rich Low_complexity Low_complexity 1 32 0 2093 124 0 0 chr6 7291291 7291590 -181987964 - AluSx SINE Alu -13 299 1 888 154 0 0 chr6 7291975 7292118 -181987436 - FLAM_C SINE Alu 0 143 1 1564 114 146 4 chr6 7292279 7292533 -181987021 + AluSg1 SINE Alu 4 293 -16 321 236 194 36 chr6 7292628 7292793 -181986761 - L2 LINE L2 -211 3061 2871 1721 164 0 10 chr6 7293338 7293637 -181985917 + AluJb SINE Alu 1 296 -16 1614 134 91 14 chr6 7293845 7293983 -181985571 - AluJb SINE Alu -16 296 170 2171 107 0 13 chr6 7293983 7294293 -181985261 - AluSx SINE Alu -6 306 1 1614 134 91 14 chr6 7294293 7294429 -181985125 - AluJb SINE Alu -142 170 1 217 351 69 30 chr6 7294828 7294959 -181984595 - L3 LINE CR1 -89 1488 1353 1924 150 0 7 chr6 7295429 7295735 -181983819 - AluJb SINE Alu -8 304 1 1967 117 3 17 chr6 7296332 7296631 -181982923 - AluSx SINE Alu -17 295 1 2410 60 0 3 chr6 7296780 7297080 -181982474 - AluY SINE Alu -12 299 1 600 258 39 57 chr6 7297870 7298099 -181981455 - MIR SINE MIR -1 261 37 2278 64 0 0 chr6 7299152 7299469 -181980085 - AluSg SINE Alu 0 317 1 1627 115 78 0 chr6 7299489 7299732 -181979822 - AluSq SINE Alu -45 268 7 376 224 84 28 chr6 7301637 7301744 -181977810 - MIR SINE MIR -76 186 74 2153 103 0 0 chr6 7301856 7302147 -181977407 + AluSx SINE Alu 1 291 -21 2051 134 0 0 chr6 7303786 7304084 -181975470 - AluSg SINE Alu -12 298 1 2291 54 40 0 chr6 7304099 7304395 -181975159 - AluY SINE Alu -3 308 1 371 269 67 8 chr6 7304430 7304549 -181975005 - MIR SINE MIR -32 230 105 580 227 74 23 chr6 7304607 7304783 -181974771 - MIR SINE MIR -62 200 16 525 134 12 0 chr6 7304848 7304930 -181974624 - AluJ/FLAM SINE Alu -228 84 2 1538 167 20 33 chr6 7305033 7305221 -181974333 - AluSx SINE Alu -16 296 112 2185 112 0 0 chr6 7305221 7305524 -181974030 - AluSq SINE Alu -10 303 1 1538 167 20 33 chr6 7305524 7305635 -181973919 - AluSx SINE Alu -200 112 1 496 188 0 0 chr6 7305656 7305741 -181973813 + L2 LINE L2 3229 3313 0 298 216 9 117 chr6 7306269 7306380 -181973174 - MIR3 SINE MIR -6 202 104 681 197 0 0 chr6 7306610 7306727 -181972827 + FLAM_A SINE Alu 1 117 -16 189 107 0 0 chr6 7306727 7306755 -181972799 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 243 290 42 53 chr6 7306941 7307203 -181972351 - L1ME4a LINE L1 -65 6056 5798 759 183 0 22 chr6 7309607 7309744 -181969810 - FLAM_C SINE Alu -8 135 2 25 31 0 0 chr6 7314387 7314419 -181965135 + GC_rich Low_complexity Low_complexity 1 32 0 2209 65 0 20 chr6 7315112 7315404 -181964150 + AluSq SINE Alu 14 299 -14 237 65 0 0 chr6 7317009 7317040 -181962514 + (T)n Simple_repeat Simple_repeat 1 31 0 664 144 79 0 chr6 7317382 7317521 -181962033 + L1MA7 LINE L1 6133 6282 -9 189 107 0 0 chr6 7319136 7319164 -181960390 + (TC)n Simple_repeat Simple_repeat 2 29 0 198 71 0 0 chr6 7319270 7319298 -181960256 + (CA)n Simple_repeat Simple_repeat 2 29 0 407 231 28 0 chr6 7321558 7321666 -181957888 + L1MD2 LINE L1 6249 6359 0 2176 106 0 0 chr6 7322100 7322392 -181957162 - AluSx SINE Alu -20 292 1 229 175 0 0 chr6 7322635 7322675 -181956879 - L3b LINE CR1 -3 1580 1541 2278 76 0 7 chr6 7322856 7323158 -181956396 - AluSx SINE Alu -12 300 1 189 0 0 0 chr6 7326275 7326296 -181953258 + (T)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr6 7326402 7326423 -181953131 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr6 7326583 7326614 -181952940 + (CA)n Simple_repeat Simple_repeat 2 32 0 509 274 37 93 chr6 7326892 7327246 -181952308 - MLT1I LTR MaLR -6 403 70 1084 138 69 0 chr6 7327382 7327556 -181951998 + MER5A DNA MER1_type 4 189 0 740 256 55 47 chr6 7327676 7327930 -181951624 - MIR SINE MIR -1 261 6 2041 122 0 13 chr6 7328469 7328780 -181950774 - AluSx SINE Alu -5 307 1 22 0 0 0 chr6 7328949 7328971 -181950583 + AT_rich Low_complexity Low_complexity 1 22 0 1957 124 0 7 chr6 7330319 7330617 -181948937 + AluSx SINE Alu 1 296 -16 185 139 0 28 chr6 7330617 7330644 -181948910 - L2 LINE L2 -22 3291 3264 1483 159 52 38 chr6 7330658 7330948 -181948606 + AluJb SINE Alu 1 294 -18 229 267 0 0 chr6 7333183 7333228 -181946326 - L2 LINE L2 -27 3286 3242 400 162 0 81 chr6 7333279 7333378 -181946176 - AluJ/FRAM SINE Alu -4 308 218 378 104 5 19 chr6 7333394 7333453 -181946101 - FLAM SINE Alu -11 122 71 21 71 0 0 chr6 7333474 7333516 -181946038 + AT_rich Low_complexity Low_complexity 1 42 0 1662 157 0 52 chr6 7333689 7333847 -181945707 - AluJb SINE Alu -22 290 154 2252 98 3 0 chr6 7333847 7334153 -181945401 - AluSc SINE Alu -2 307 1 1662 157 0 52 chr6 7334153 7334300 -181945254 - AluJb SINE Alu -158 154 1 229 0 54 27 chr6 7335989 7336026 -181943528 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 908 149 0 7 chr6 7336030 7336178 -181943376 - AluJb SINE Alu -24 288 142 2345 77 0 10 chr6 7336550 7336862 -181942692 - AluY SINE Alu -1 310 2 21 0 0 0 chr6 7340473 7340494 -181939060 + AT_rich Low_complexity Low_complexity 1 21 0 1992 82 85 4 chr6 7340519 7340800 -181938754 - AluSq SINE Alu -9 304 1 213 304 0 0 chr6 7341030 7341086 -181938468 - MIR SINE MIR -96 166 111 2192 94 20 0 chr6 7341148 7341446 -181938108 + AluSx SINE Alu 1 304 -8 420 304 193 46 chr6 7341565 7341979 -181937575 - L3 LINE CR1 -2 1575 1101 262 293 82 24 chr6 7341985 7342171 -181937383 + MIR SINE MIR 11 255 -7 453 209 85 52 chr6 7344037 7344190 -181935364 - MER5A DNA MER1_type -3 186 29 392 250 98 38 chr6 7344692 7344824 -181934730 + MIR SINE MIR 64 203 -59 1639 179 3 0 chr6 7345117 7345414 -181934140 - AluJo SINE Alu -14 298 1 761 177 8 0 chr6 7345586 7345716 -181933838 - FLAM_C SINE Alu -1 132 2 1550 109 97 4 chr6 7346444 7346691 -181932863 + AluSx SINE Alu 42 311 -1 1171 118 129 86 chr6 7346704 7346983 -181932571 + AluSx SINE Alu 21 311 -1 192 125 0 0 chr6 7347650 7347682 -181931872 + (AAATG)n Simple_repeat Simple_repeat 4 35 0 1981 137 13 0 chr6 7347772 7348078 -181931476 - AluSx SINE Alu -2 310 1 189 0 0 0 chr6 7348078 7348099 -181931455 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1794 147 7 3 chr6 7349085 7349378 -181930176 - AluJb SINE Alu -10 302 9 2101 117 7 7 chr6 7350104 7350412 -181929142 + AluSx SINE Alu 1 308 -4 1561 149 16 68 chr6 7350711 7350882 -181928672 - AluJo SINE Alu -19 293 144 2039 139 7 0 chr6 7350882 7351192 -181928362 - AluSx SINE Alu 0 312 1 1561 149 16 68 chr6 7351192 7351329 -181928225 - AluJo SINE Alu -168 144 1 23 54 0 0 chr6 7351329 7351366 -181928188 + AT_rich Low_complexity Low_complexity 1 37 0 578 169 0 48 chr6 7352444 7352568 -181926986 - FLAM_A SINE Alu 0 142 25 21 36 0 0 chr6 7352966 7352994 -181926560 + AT_rich Low_complexity Low_complexity 1 28 0 762 168 0 8 chr6 7352994 7353119 -181926435 - FLAM_C SINE Alu -17 126 3 295 277 85 11 chr6 7356214 7356308 -181923246 - L1ME LINE L1 -519 5602 5502 203 286 0 0 chr6 7356363 7356412 -181923142 + CT-rich Low_complexity Low_complexity 4 52 0 246 343 20 10 chr6 7356544 7356643 -181922911 - L2 LINE L2 -7 3306 3207 671 177 23 23 chr6 7357239 7357369 -181922185 + FLAM_A SINE Alu 1 130 -3 213 65 0 0 chr6 7357432 7357463 -181922091 + (TTA)n Simple_repeat Simple_repeat 3 33 0 27 0 0 0 chr6 7357576 7357603 -181921951 + AT_rich Low_complexity Low_complexity 1 27 0 896 102 0 0 chr6 7357604 7357722 -181921832 - FLAM_C SINE Alu -19 124 7 2239 101 0 0 chr6 7358457 7358755 -181920799 + AluSx SINE Alu 1 298 -14 698 255 98 13 chr6 7358979 7359214 -181920340 + MIR SINE MIR 5 259 -3 273 224 19 118 chr6 7359482 7359643 -181919911 + MER5A DNA MER1_type 21 165 -24 575 281 49 0 chr6 7360310 7360474 -181919080 - MIR SINE MIR -8 254 83 450 0 0 0 chr6 7360710 7360760 -181918794 + (TTTTA)n Simple_repeat Simple_repeat 1 50 0 671 101 50 0 chr6 7360760 7360859 -181918695 - HY1 scRNA scRNA -8 104 1 23 33 0 0 chr6 7360936 7360966 -181918588 + AT_rich Low_complexity Low_complexity 1 30 0 1818 132 3 52 chr6 7361043 7361370 -181918184 + AluSx SINE Alu 1 311 -1 249 159 0 0 chr6 7361585 7361629 -181917925 + (TG)n Simple_repeat Simple_repeat 2 45 0 1340 102 0 11 chr6 7361629 7361816 -181917738 - AluSg/x SINE Alu -32 280 96 464 315 31 0 chr6 7363509 7363639 -181915915 + MIR SINE MIR 11 144 -118 267 274 115 0 chr6 7363684 7363797 -181915757 + MIR SINE MIR 137 262 0 231 254 17 0 chr6 7364601 7364660 -181914894 - L1MB8 LINE L1 -20 6158 6099 * 1314 180 15 15 chr6 7364646 7364913 -181914641 - L1MB8 LINE L1 -345 5833 5567 1941 212 172 7 chr6 7364916 7365482 -181914072 - L1MB8 LINE L1 -1573 4573 3897 180 0 0 0 chr6 7365482 7365502 -181914052 + (T)n Simple_repeat Simple_repeat 1 20 0 1941 212 172 7 chr6 7365502 7365548 -181914006 - L1MB8 LINE L1 -2249 3897 3860 1955 132 0 0 chr6 7365557 7365846 -181913708 - AluSx SINE Alu -18 294 6 1864 225 56 17 chr6 7365852 7366496 -181913058 - L1MB8 LINE L1 -2690 3456 2788 1204 193 8 4 chr6 7366510 7366749 -181912805 - L1MB8 LINE L1 -3317 2829 2590 275 273 322 0 chr6 7366773 7366894 -181912660 - MIR SINE MIR -91 171 12 1948 119 89 18 chr6 7366894 7366944 -181912610 - MER46B DNA MER2_type -2495 236 191 200 57 0 29 chr6 7366944 7366979 -181912575 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1948 119 89 18 chr6 7366979 7367265 -181912289 - MER46B DNA MER2_type -2540 191 1 21 0 0 0 chr6 7367596 7367617 -181911937 + AT_rich Low_complexity Low_complexity 1 21 0 1702 149 0 4 chr6 7367626 7367894 -181911660 + AluSx SINE Alu 1 267 -45 700 272 49 0 chr6 7368232 7368416 -181911138 + MIR SINE MIR 70 262 0 279 104 0 0 chr6 7369557 7369605 -181909949 + (T)n Simple_repeat Simple_repeat 1 48 0 30 27 0 0 chr6 7370054 7370091 -181909463 + AT_rich Low_complexity Low_complexity 1 37 0 1386 162 79 0 chr6 7370791 7371032 -181908522 + AluSx SINE Alu 31 290 -22 276 273 165 8 chr6 7372580 7372701 -181906853 + MIR SINE MIR 117 256 -6 1006 150 0 0 chr6 7373016 7373201 -181906353 - AluJb SINE Alu 0 306 122 315 152 0 0 chr6 7373538 7373584 -181905970 + L1MC4 LINE L1 6658 6703 -1339 396 59 0 0 chr6 7373589 7373640 -181905914 + (TG)n Simple_repeat Simple_repeat 2 52 0 1989 105 59 0 chr6 7373641 7373927 -181905627 - AluSq SINE Alu -10 303 1 286 343 29 25 chr6 7375899 7376138 -181903416 + L3 LINE CR1 1043 1282 -295 557 196 10 0 chr6 7376632 7376729 -181902825 + FRAM SINE Alu 63 160 -16 637 256 18 0 chr6 7378506 7378674 -181900880 - MER5A DNA MER1_type -3 186 16 260 352 22 0 chr6 7378707 7378798 -181900756 - MIR SINE MIR -112 150 58 498 291 131 51 chr6 7379859 7380474 -181899080 - L2 LINE L2 -8 3305 2621 369 355 35 43 chr6 7380534 7380790 -181898764 - L1MC/D LINE L1 -2109 5699 5446 824 320 157 36 chr6 7380795 7381439 -181898115 + L3 LINE CR1 851 1572 -5 297 259 134 21 chr6 7382246 7382401 -181897153 + MIR SINE MIR 2 181 -27 549 198 0 0 chr6 7382922 7383028 -181896526 - AluJo/FRAM SINE Alu -2 310 205 448 118 0 0 chr6 7383027 7383095 -181896459 + AluS SINE Alu 226 293 -18 * 251 233 62 144 chr6 7384552 7384663 -181894891 + L2 LINE L2 3180 3278 -35 624 81 0 0 chr6 7384663 7384750 -181894804 + (TGGA)n Simple_repeat Simple_repeat 1 87 0 251 233 62 144 chr6 7384750 7384784 -181894770 + L2 LINE L2 3278 3313 0 211 286 165 30 chr6 7386366 7386499 -181893055 + MIR3 SINE MIR 24 174 -34 1952 133 3 16 chr6 7386509 7386825 -181892729 - AluSx SINE Alu 0 312 1 186 43 0 0 chr6 7388693 7388716 -181890838 + (CATTT)n Simple_repeat Simple_repeat 3 25 0 1536 179 4 14 chr6 7388718 7388998 -181890556 - AluJb SINE Alu -35 277 1 608 258 47 39 chr6 7388998 7389231 -181890323 - MER33 DNA MER1_type -53 271 37 192 321 49 12 chr6 7389457 7389538 -181890016 - L2 LINE L2 -4 3268 3185 215 254 32 16 chr6 7440752 7440815 -181838739 + CT-rich Low_complexity Low_complexity 5 68 0 2161 110 0 3 chr6 7445338 7445638 -181833916 + AluSx SINE Alu 1 299 -13 799 144 0 0 chr6 7445649 7445767 -181833787 + FLAM_C SINE Alu 1 118 -15 2249 84 7 0 chr6 7446472 7446769 -181832785 + AluSq SINE Alu 1 299 -14 228 277 15 15 chr6 7448837 7448902 -181830652 + MIR SINE MIR 111 175 -87 381 22 0 0 chr6 7450417 7450463 -181829091 + (GA)n Simple_repeat Simple_repeat 1 46 0 282 29 0 0 chr6 7451149 7451184 -181828370 + (TTA)n Simple_repeat Simple_repeat 1 35 0 318 153 0 0 chr6 7452326 7452385 -181827169 + (TTA)n Simple_repeat Simple_repeat 2 60 0 237 65 0 0 chr6 7452840 7452871 -181826683 + (T)n Simple_repeat Simple_repeat 1 31 0 1545 175 0 15 chr6 7453505 7453779 -181825775 + AluJo SINE Alu 9 278 -34 2251 82 3 0 chr6 7454237 7454528 -181825026 + AluY SINE Alu 1 292 -19 2081 103 10 3 chr6 7454533 7454835 -181824719 + AluSx SINE Alu 1 304 -8 433 274 117 11 chr6 7455162 7455341 -181824213 + MIR SINE MIR 13 210 -52 305 172 17 0 chr6 7455756 7455814 -181823740 + MER5A DNA MER1_type 9 67 -122 841 152 48 48 chr6 7455829 7455994 -181823560 + FRAM SINE Alu 2 166 0 181 247 278 10 chr6 7455998 7456095 -181823459 + MER5A DNA MER1_type 61 183 -6 339 179 328 22 chr6 7457391 7457525 -181822029 - MLT1G LTR MaLR 0 590 416 274 296 49 45 chr6 7457590 7457630 -181821924 + MER5A DNA MER1_type 29 67 -122 2190 114 0 0 chr6 7457630 7457929 -181821625 + AluSq SINE Alu 1 299 -14 274 296 49 45 chr6 7457929 7458038 -181821516 + MER5A DNA MER1_type 67 186 -3 1655 162 4 22 chr6 7458454 7458732 -181820822 - AluSx SINE Alu -35 277 5 1897 129 13 13 chr6 7458744 7459055 -181820499 - AluJb SINE Alu -1 311 1 841 239 112 15 chr6 7459174 7459442 -181820112 - MER45C DNA AcHobo -659 294 1 195 100 0 0 chr6 7460269 7460299 -181819255 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 841 169 15 0 chr6 7461108 7461238 -181818316 + FLAM_A SINE Alu 1 132 -1 660 210 0 8 chr6 7461520 7461639 -181817915 + FLAM_C SINE Alu 2 119 -24 180 0 0 0 chr6 7461640 7461660 -181817894 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 2122 114 0 3 chr6 7464001 7464298 -181815256 - AluSq SINE Alu -17 296 1 2153 83 43 0 chr6 7464824 7465124 -181814430 - AluSp SINE Alu 0 313 1 188 67 33 0 chr6 7465135 7465165 -181814389 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2306 99 0 3 chr6 7465169 7465483 -181814071 - AluSq SINE Alu 0 313 1 1253 215 115 6 chr6 7466057 7466387 -181813167 + MLT1B LTR MaLR 9 374 -16 2024 139 0 0 chr6 7466723 7467026 -181812528 - AluSx SINE Alu -7 305 3 180 219 14 110 chr6 7467339 7467412 -181812142 + L3 LINE CR1 1493 1558 -19 892 274 161 11 chr6 7467495 7467949 -181811605 + LTR41 LTR ERVL 1 564 -209 540 90 0 26 chr6 7467982 7468060 -181811494 - Alu SINE Alu -9 301 226 369 229 57 57 chr6 7468061 7468201 -181811353 + LTR41 LTR ERVL 620 759 -14 536 243 77 0 chr6 7468874 7469043 -181810511 + MER5A DNA MER1_type 7 188 -1 188 244 13 39 chr6 7469156 7469234 -181810320 - MER5A DNA MER1_type -26 163 88 216 278 0 0 chr6 7469676 7469730 -181809824 + (CAATT)n Simple_repeat Simple_repeat 4 57 0 299 214 137 34 chr6 7470989 7471106 -181808448 - L2 LINE L2 -1 3312 3184 1906 246 79 35 chr6 7471267 7471710 -181807844 + L1MC4 LINE L1 7348 7829 -213 2402 73 17 0 chr6 7471710 7472010 -181807544 + AluSp SINE Alu 1 305 -8 1906 246 79 35 chr6 7472010 7472215 -181807339 + L1MC4 LINE L1 7829 8024 -18 2320 103 0 3 chr6 7472753 7473054 -181806500 + AluSp SINE Alu 1 300 -13 267 291 145 0 chr6 7473161 7473278 -181806276 + MIR SINE MIR 33 166 -96 196 186 0 0 chr6 7475343 7475386 -181804168 - MER5A DNA MER1_type -34 155 113 * 213 236 101 34 chr6 7475352 7475441 -181804113 + MER5A DNA MER1_type 54 148 -41 657 0 80 0 chr6 7475677 7475790 -181803764 + (TA)n Simple_repeat Simple_repeat 2 123 0 2265 82 21 0 chr6 7475790 7476072 -181803482 - AluSg SINE Alu -22 288 1 456 273 258 22 chr6 7476152 7476419 -181803135 + L3 LINE CR1 1235 1564 -13 324 250 73 0 chr6 7476672 7476768 -181802786 - MIR SINE MIR -108 154 52 903 101 0 81 chr6 7476809 7476958 -181802596 - AluJo SINE Alu -175 137 1 1730 149 0 30 chr6 7477659 7477954 -181801600 + AluSx SINE Alu 3 288 -24 2501 51 0 0 chr6 7477964 7478256 -181801298 + AluY SINE Alu 1 292 -19 1219 113 0 0 chr6 7478259 7478449 -181801105 + AluSg/x SINE Alu 125 314 0 723 128 9 0 chr6 7478515 7478624 -181800930 - FLAM_C SINE Alu -32 111 2 2207 137 0 0 chr6 7478637 7478944 -181800610 - AluSx SINE Alu -5 307 1 383 218 119 10 chr6 7479451 7479552 -181800002 + MIR SINE MIR 61 172 -90 192 245 153 61 chr6 7479553 7479651 -181799903 - L2 LINE L2 -13 3300 3194 288 0 0 0 chr6 7479689 7479721 -181799833 + (TG)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr6 7479720 7479749 -181799805 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2157 88 11 14 chr6 7479776 7480059 -181799495 - AluSx SINE Alu -30 282 1 2547 63 0 0 chr6 7480592 7480894 -181798660 + AluY SINE Alu 1 302 -9 2260 110 3 0 chr6 7480907 7481206 -181798348 + AluSx SINE Alu 1 300 -12 227 206 137 0 chr6 7481398 7481471 -181798083 - L1ME4a LINE L1 -70 6051 5969 2244 92 35 0 chr6 7482069 7482351 -181797203 - AluSg SINE Alu -18 292 1 22 0 0 0 chr6 7484400 7484422 -181795132 + AT_rich Low_complexity Low_complexity 1 22 0 2146 100 7 17 chr6 7484455 7484611 -181794943 - AluSx SINE Alu -24 288 135 2287 114 0 0 chr6 7484611 7484908 -181794646 - AluSx SINE Alu -15 297 1 2146 100 7 17 chr6 7484908 7485042 -181794512 - AluSx SINE Alu -177 135 1 200 205 384 13 chr6 7485914 7486065 -181793489 - MIR SINE MIR -18 244 38 1951 146 6 16 chr6 7486755 7487070 -181792484 + AluSx SINE Alu 1 312 0 213 329 95 25 chr6 7487376 7487534 -181792020 + MIR SINE MIR 82 250 -12 2157 90 10 29 chr6 7487989 7488300 -181791254 + AluSx SINE Alu 1 305 -7 1024 128 60 0 chr6 7492261 7492410 -181787144 - AluSg/x SINE Alu -18 292 135 2067 125 3 23 chr6 7492473 7492776 -181786778 + AluSx SINE Alu 1 297 -15 2006 140 14 3 chr6 7493151 7493444 -181786110 + AluJb SINE Alu 1 296 -16 210 301 174 36 chr6 7493456 7493898 -181785656 + L2 LINE L2 2196 2698 -616 749 194 0 8 chr6 7493912 7494046 -181785508 - FLAM_A SINE Alu 0 133 1 549 241 30 60 chr6 7494368 7494534 -181785020 + MER8 DNA MER2_type 1 161 -78 22 35 0 0 chr6 7494535 7494564 -181784990 + AT_rich Low_complexity Low_complexity 1 29 0 1431 108 19 0 chr6 7494567 7494780 -181784774 - L1PB2 LINE L1 -5 6146 5930 1459 163 106 4 chr6 7494811 7495075 -181784479 - AluJb SINE Alu -21 291 1 366 134 15 30 chr6 7495143 7495210 -181784344 - Tigger2 DNA MER2_type -2651 67 2 359 349 11 37 chr6 7495448 7495637 -181783917 + L1MC4a LINE L1 5682 5865 -1943 2212 88 0 11 chr6 7495767 7496081 -181783473 + AluSx SINE Alu 1 311 0 695 183 9 0 chr6 7496914 7497029 -181782525 - FLAM_A SINE Alu -17 116 1 345 264 0 58 chr6 7498007 7498128 -181781426 + G-rich Low_complexity Low_complexity 2 115 0 1854 166 13 0 chr6 7498300 7498601 -181780953 + AluJb SINE Alu 1 305 -7 1777 180 3 10 chr6 7498805 7499105 -181780449 + AluJo SINE Alu 1 298 -14 609 183 8 32 chr6 7500387 7500513 -181779041 + FLAM_A SINE Alu 1 123 -10 1961 118 38 3 chr6 7500779 7501066 -181778488 + AluSp SINE Alu 2 298 -15 240 333 61 25 chr6 7501486 7501684 -181777870 + L3b LINE CR1 1266 1470 -113 2370 98 0 0 chr6 7502007 7502303 -181777251 - AluSx SINE Alu -15 297 2 323 313 46 30 chr6 7502996 7503127 -181776427 - MER117 DNA MER1_type -57 140 8 2233 111 7 0 chr6 7503845 7504143 -181775411 + AluSc SINE Alu 1 300 -9 2352 84 7 13 chr6 7504218 7504526 -181775028 + AluSg SINE Alu 1 306 -4 767 142 0 0 chr6 7504578 7504698 -181774856 + AluSg/x SINE Alu 171 290 -20 1823 107 103 4 chr6 7505070 7505341 -181774213 + AluSx SINE Alu 1 298 -14 263 308 55 0 chr6 7505497 7505588 -181773966 - MER5A DNA MER1_type -84 105 10 696 204 27 34 chr6 7505605 7505752 -181773802 - MER58B DNA MER1_type 0 341 196 265 233 167 0 chr6 7505940 7506030 -181773524 + L1MB7 LINE L1 6079 6183 -1 225 215 77 0 chr6 7507010 7507075 -181772479 - L2 LINE L2 -1757 1557 1488 2278 75 0 52 chr6 7507497 7507804 -181771750 - AluY SINE Alu -20 291 1 2402 53 0 4 chr6 7507996 7508277 -181771277 + AluY SINE Alu 1 280 -31 1598 155 62 0 chr6 7508912 7509170 -181770384 - AluJo SINE Alu -21 291 18 218 218 95 129 chr6 7510036 7510183 -181769371 + L2 LINE L2 3136 3277 -36 1938 137 0 23 chr6 7510534 7510833 -181768721 + AluJo SINE Alu 1 292 -20 2646 94 16 11 chr6 7510862 7511235 -181768319 + THE1C LTR MaLR 1 375 0 966 174 0 18 chr6 7511586 7511753 -181767801 - FRAM SINE Alu -2 164 1 2159 131 3 0 chr6 7511991 7512297 -181767257 + AluSx SINE Alu 1 307 -5 23 33 0 0 chr6 7513028 7513058 -181766496 + AT_rich Low_complexity Low_complexity 1 30 0 2187 104 0 3 chr6 7515031 7515319 -181764235 - AluSx SINE Alu -25 287 1 494 256 128 10 chr6 7515570 7515765 -181763789 - MIR SINE MIR -24 238 21 2182 91 144 6 chr6 7516062 7516403 -181763151 - pTR5 LTR ERV1 -2046 392 5 1209 181 19 39 chr6 7516400 7516966 -181762588 + pTR5 LTR ERV1 743 1346 -1092 * 2537 185 209 41 chr6 7516979 7517683 -181761871 + LTR12 LTR ERV1 4 825 -1 3917 152 190 40 chr6 7517683 7518642 -181760912 - pTR5 LTR ERV1 -404 1756 31 2231 107 0 17 chr6 7519758 7520056 -181759498 - AluSx SINE Alu -19 293 1 458 268 159 22 chr6 7520057 7520333 -181759221 + L2 LINE L2 2999 3312 -1 204 40 0 0 chr6 7520495 7520520 -181759034 + (A)n Simple_repeat Simple_repeat 1 25 0 615 308 147 22 chr6 7520731 7520779 -181758775 + L2 LINE L2 1445 1486 -1828 2056 123 17 3 chr6 7520779 7521072 -181758482 - AluJo SINE Alu -5 307 11 615 308 147 22 chr6 7521072 7521439 -181758115 + L2 LINE L2 1486 1912 -1402 807 273 73 57 chr6 7521556 7521580 -181757974 + HERV16 LTR ERVL 1165 1187 -3809 1067 220 125 32 chr6 7521580 7521795 -181757759 - MER2 DNA MER2_type -2 342 88 2424 68 0 0 chr6 7521795 7522087 -181757467 - AluY SINE Alu -19 292 1 1067 220 125 32 chr6 7522087 7522184 -181757370 - MER2 DNA MER2_type -256 88 1 807 273 73 57 chr6 7522184 7522600 -181756954 + HERV16 LTR ERVL 1187 1595 -3401 2453 92 0 0 chr6 7522600 7522906 -181756648 + AluSc SINE Alu 1 306 -3 807 273 73 57 chr6 7522906 7522959 -181756595 + HERV16 LTR ERVL 1595 1646 -3350 1058 171 89 131 chr6 7522959 7523122 -181756432 + MLT1A1 LTR MaLR 1 169 -196 2205 135 0 0 chr6 7523122 7523426 -181756128 - AluSx SINE Alu -8 304 1 1058 171 89 131 chr6 7523426 7523572 -181755982 + MLT1A1 LTR MaLR 169 294 -71 2441 82 0 0 chr6 7523572 7523875 -181755679 - AluSc SINE Alu -6 303 1 1058 171 89 131 chr6 7523875 7523945 -181755609 + MLT1A1 LTR MaLR 294 365 0 807 273 73 57 chr6 7523945 7524045 -181755509 + HERV16 LTR ERVL 1646 1833 -3163 353 270 43 26 chr6 7524154 7524269 -181755285 + HERV16 LTR ERVL 2334 2450 -2546 597 229 0 0 chr6 7524422 7524553 -181755001 + L1MB7 LINE L1 6039 6169 -15 181 231 116 33 chr6 7526198 7526319 -181753235 + L2 LINE L2 1554 1684 -1630 350 57 19 0 chr6 7526648 7526701 -181752853 + (TA)n Simple_repeat Simple_repeat 1 54 0 2266 111 0 13 chr6 7526702 7527008 -181752546 - AluSx SINE Alu -10 302 1 651 136 34 25 chr6 7527229 7527347 -181752207 - AluJo SINE Alu -18 294 176 438 171 48 19 chr6 7527373 7527478 -181752076 - AluJo SINE Alu -118 194 87 2508 65 0 7 chr6 7527479 7527786 -181751768 - AluY SINE Alu -6 305 1 2012 127 0 0 chr6 7528415 7528691 -181750863 - AluSx SINE Alu -13 299 24 647 143 107 0 chr6 7528691 7528803 -181750751 - AluSq/x SINE Alu -187 125 2 2340 75 4 0 chr6 7529010 7529291 -181750263 + AluSp SINE Alu 1 282 -31 270 0 0 0 chr6 7529294 7529324 -181750230 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1961 155 6 3 chr6 7529922 7530235 -181749319 + L1MA5 LINE L1 5950 6266 -34 414 0 0 0 chr6 7530235 7530281 -181749273 + (TG)n Simple_repeat Simple_repeat 2 47 0 2226 114 0 3 chr6 7530296 7530594 -181748960 - AluSx SINE Alu -15 297 1 233 152 43 0 chr6 7530594 7530640 -181748914 + L1MA6 LINE L1 6253 6300 0 659 345 26 7 chr6 7530702 7531006 -181748548 - L2 LINE L2 -452 2862 2553 2061 144 3 0 chr6 7531467 7531773 -181747781 + AluSx SINE Alu 1 307 -5 21 36 0 0 chr6 7532275 7532303 -181747251 + AT_rich Low_complexity Low_complexity 1 28 0 2410 104 0 0 chr6 7534303 7534612 -181744942 - AluSq SINE Alu -4 309 1 297 51 0 0 chr6 7535000 7535039 -181744515 + (TA)n Simple_repeat Simple_repeat 2 40 0 2384 79 3 0 chr6 7535039 7535329 -181744225 - AluSx SINE Alu -21 291 1 21 0 0 0 chr6 7535351 7535372 -181744182 + AT_rich Low_complexity Low_complexity 1 21 0 2083 142 10 0 chr6 7535808 7536117 -181743437 + AluJb SINE Alu 1 312 0 1827 193 86 29 chr6 7536224 7536702 -181742852 - MLT1D LTR MaLR 0 505 1 694 194 49 170 chr6 7536740 7536959 -181742595 - MER102a DNA MER1_type -1087 330 179 1786 161 18 7 chr6 7536959 7537238 -181742316 - AluJo SINE Alu -30 282 1 694 194 49 170 chr6 7537238 7537390 -181742164 - MER102a DNA MER1_type -1238 179 10 4902 207 98 16 chr6 7537837 7537869 -181741685 - L1MC/D LINE L1 -758 5388 5360 1998 162 0 0 chr6 7537869 7538171 -181741383 - AluSx SINE Alu -10 302 1 4902 207 98 16 chr6 7538171 7538402 -181741152 - L1MC/D LINE L1 -786 5360 5149 2379 84 7 19 chr6 7538402 7538711 -181740843 + AluSg SINE Alu 1 305 -5 4902 207 98 16 chr6 7538711 7539912 -181739642 - L1MC/D LINE L1 -997 5149 3843 322 173 39 0 chr6 7539940 7539992 -181739562 - MLT1D LTR MaLR -418 87 34 647 92 11 0 chr6 7540021 7540132 -181739422 - L1PB1 LINE L1 -100 6051 5940 5430 91 8 2 chr6 7540960 7541802 -181737752 - L1PB1 LINE L1 -178 5973 5128 1212 219 0 7 chr6 7544033 7544321 -181735233 - L1PB1 LINE L1 -1018 5128 4843 1701 97 0 9 chr6 7544352 7544579 -181734975 + AluSg/x SINE Alu 87 311 -1 4503 160 132 45 chr6 7545386 7546836 -181732718 + pTR5 LTR ERV1 730 2438 0 2153 106 14 7 chr6 7547007 7547299 -181732255 + AluY SINE Alu 1 294 -17 466 88 15 0 chr6 7547448 7547516 -181732038 - MER41B LTR ERV1 -86 549 481 1876 152 21 0 chr6 7547634 7547923 -181731631 + AluJo SINE Alu 1 295 -17 1846 166 0 34 chr6 7547926 7548246 -181731308 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr6 7548395 7548424 -181731130 + AT_rich Low_complexity Low_complexity 1 29 0 13115 186 26 33 chr6 7548438 7551012 -181728542 + L1PB1 LINE L1 6 2596 -4300 2172 125 6 3 chr6 7551012 7551324 -181728230 + AluSq SINE Alu 1 313 0 13115 186 26 33 chr6 7551324 7552880 -181726674 + L1PB1 LINE L1 2596 4161 -2735 209 81 0 27 chr6 7552880 7552917 -181726637 + (TAAAA)n Simple_repeat Simple_repeat 1 36 0 13115 186 26 33 chr6 7552917 7555058 -181724496 + L1PB1 LINE L1 4161 6511 -385 414 0 0 0 chr6 7555058 7555104 -181724450 + (CA)n Simple_repeat Simple_repeat 2 47 0 13115 186 26 33 chr6 7555104 7555488 -181724066 + L1PB1 LINE L1 6511 6896 0 32 26 0 0 chr6 7555523 7555562 -181723992 + AT_rich Low_complexity Low_complexity 1 39 0 1680 174 24 7 chr6 7557081 7557379 -181722175 + AluJo SINE Alu 1 303 -9 2274 96 13 3 chr6 7558157 7558459 -181721095 - AluSx SINE Alu -7 305 1 234 257 11 140 chr6 7559061 7559146 -181720408 - L1MA10 LINE L1 -4 6330 6236 1563 129 0 0 chr6 7559146 7559370 -181720184 - AluSg/x SINE Alu -3 307 84 234 257 11 140 chr6 7559370 7559389 -181720165 - L1MA10 LINE L1 -98 6236 6216 396 0 0 0 chr6 7559389 7559433 -181720121 + (TA)n Simple_repeat Simple_repeat 2 45 0 2587 182 29 76 chr6 7559441 7559920 -181719634 - L1ME1 LINE L1 -92 6074 5574 1285 167 114 43 chr6 7559920 7560201 -181719353 + AluJo SINE Alu 1 301 -11 2587 182 29 76 chr6 7560201 7560413 -181719141 - L1ME1 LINE L1 -592 5574 5416 2325 92 3 3 chr6 7560413 7560708 -181718846 - AluSq SINE Alu -18 295 1 2587 182 29 76 chr6 7560708 7560740 -181718814 - L1ME1 LINE L1 -750 5416 5384 2080 168 104 28 chr6 7561195 7561664 -181717890 - MLT1D LTR MaLR 0 505 1 2195 109 0 10 chr6 7562023 7562326 -181717228 + AluSx SINE Alu 1 300 -12 772 222 144 92 chr6 7564090 7564343 -181715211 - L1MC5 LINE L1 -1 7960 7722 1967 131 3 20 chr6 7564343 7564648 -181714906 + AluSx SINE Alu 1 300 -12 772 222 144 92 chr6 7564648 7565060 -181714494 - L1MC5 LINE L1 -239 7722 7260 571 220 30 18 chr6 7565192 7565360 -181714194 - L1MC5 LINE L1 -733 7228 7059 2290 108 0 3 chr6 7565824 7566129 -181713425 - AluSg SINE Alu -6 304 1 21 0 0 0 chr6 7567297 7567318 -181712236 + AT_rich Low_complexity Low_complexity 1 21 0 2346 103 0 0 chr6 7567325 7567626 -181711928 + AluSx SINE Alu 1 301 -11 2407 215 75 2 chr6 7567686 7568203 -181711351 + MER68 LTR ERV1 1 555 -7 368 267 68 19 chr6 7568376 7568582 -181710972 - L1MC5 LINE L1 -22 7939 7724 214 178 0 0 chr6 7568640 7568685 -181710869 + T-rich Low_complexity Low_complexity 1 45 0 1482 148 4 4 chr6 7568707 7568936 -181710618 - AluJb SINE Alu -83 229 1 2206 96 0 60 chr6 7569314 7569646 -181709908 + AluSx SINE Alu 1 312 0 2424 77 6 6 chr6 7570357 7570669 -181708885 - AluSq SINE Alu -1 312 1 403 235 71 0 chr6 7570732 7570830 -181708724 - MIR SINE MIR -109 153 49 1594 138 14 86 chr6 7571530 7571653 -181707901 - Charlie1b DNA MER1_type -2241 520 390 1647 172 11 11 chr6 7571653 7571952 -181707602 - AluJo SINE Alu 0 304 6 1594 138 14 86 chr6 7571952 7572250 -181707304 - Charlie1b DNA MER1_type -2371 390 53 1186 148 28 0 chr6 7572477 7572659 -181706895 + MER5A DNA MER1_type 3 189 0 2207 107 0 22 chr6 7572862 7573180 -181706374 + AluSx SINE Alu 1 311 -1 2276 101 10 0 chr6 7573551 7573847 -181705707 + AluSx SINE Alu 1 299 -13 1718 168 0 31 chr6 7574020 7574312 -181705242 - AluJo SINE Alu -2 310 28 2150 134 0 13 chr6 7576109 7576423 -181703131 + AluSx SINE Alu 1 310 -2 2369 100 0 3 chr6 7576490 7576800 -181702754 + AluSc SINE Alu 1 309 0 1325 192 91 25 chr6 7576816 7577102 -181702452 + AluJb SINE Alu 1 305 -7 524 292 35 59 chr6 7577185 7577292 -181702262 + L2 LINE L2 2722 2830 -442 1577 194 96 72 chr6 7577292 7577469 -181702085 + MSTD LTR MaLR 1 172 -224 2104 110 0 0 chr6 7577469 7577798 -181701756 + AluY SINE Alu 1 329 0 1577 194 96 72 chr6 7577798 7578006 -181701548 + MSTD LTR MaLR 172 396 0 524 292 35 59 chr6 7578006 7578290 -181701264 + L2 LINE L2 2830 3091 -181 433 275 19 50 chr6 7578447 7578607 -181700947 + L2 LINE L2 3158 3312 -1 2007 129 26 13 chr6 7578822 7579124 -181700430 + AluSg SINE Alu 1 306 -4 368 164 0 0 chr6 7579490 7579551 -181700003 + MER41A LTR ERV1 400 460 -94 24 32 0 0 chr6 7579811 7579842 -181699712 + AT_rich Low_complexity Low_complexity 1 31 0 682 228 7 13 chr6 7580740 7580889 -181698665 - MIR SINE MIR -59 203 56 2011 212 98 4 chr6 7581149 7581626 -181697928 - MER119 DNA MER1_type -3 580 59 2287 103 0 0 chr6 7581720 7582012 -181697542 + AluSx SINE Alu 5 296 -16 694 245 165 64 chr6 7582067 7582473 -181697081 - L1ME LINE L1 -354 5808 5444 2301 137 23 35 chr6 7582473 7582868 -181696686 + MLT1B LTR MaLR 1 390 0 694 245 165 64 chr6 7582868 7582898 -181696656 - L1ME LINE L1 -718 5444 5418 2231 103 14 0 chr6 7582898 7583190 -181696364 - AluSx SINE Alu -16 296 1 694 245 165 64 chr6 7583190 7583203 -181696351 - L1ME LINE L1 -744 5418 5408 2349 81 7 0 chr6 7583203 7583499 -181696055 - AluY SINE Alu -13 298 1 694 245 165 64 chr6 7583499 7583546 -181696008 - L1ME LINE L1 -754 5408 5257 2205 97 3 3 chr6 7583674 7583962 -181695592 - AluSg SINE Alu -22 288 1 1633 137 15 8 chr6 7584102 7584365 -181695189 + AluSg SINE Alu 37 301 -9 1911 140 74 37 chr6 7584390 7584741 -181694813 + THE1B LTR MaLR 1 364 0 744 276 123 27 chr6 7584754 7585547 -181694007 - L1ME LINE L1 -1100 5046 4164 1853 59 0 0 chr6 7585547 7585766 -181693788 - AluY SINE Alu -47 264 46 744 276 123 27 chr6 7585766 7585784 -181693770 - L1ME LINE L1 -1982 4164 4149 809 182 8 0 chr6 7585919 7586051 -181693503 + FLAM_C SINE Alu 1 133 0 1433 185 65 7 chr6 7586154 7586430 -181693124 - AluJb SINE Alu -18 294 3 2342 98 3 0 chr6 7586432 7586739 -181692815 - AluSp SINE Alu -5 308 1 814 229 13 13 chr6 7586744 7586901 -181692653 - FRAM SINE Alu -19 157 1 537 224 34 142 chr6 7586944 7587149 -181692405 + MIR SINE MIR 45 227 -35 1353 126 0 0 chr6 7588049 7588239 -181691315 - AluSg/x SINE Alu -40 270 81 2421 50 3 47 chr6 7589172 7589490 -181690064 + AluY SINE Alu 1 304 -7 456 227 70 64 chr6 7591810 7591982 -181687572 - L2 LINE L2 -7 3306 3134 868 281 191 11 chr6 7592059 7592503 -181687051 - L2 LINE L2 -337 2977 2454 499 337 122 25 chr6 7592622 7592901 -181686653 - L2 LINE L2 -9 3263 2958 948 157 0 76 chr6 7593043 7593241 -181686313 + MER20 DNA MER1_type 1 183 -36 718 238 85 68 chr6 7593524 7593805 -181685749 + MER102b DNA MER1_type 33 318 -23 890 147 61 37 chr6 7593951 7594114 -181685440 - FRAM SINE Alu -5 171 5 27 62 0 0 chr6 7594407 7594455 -181685099 + AT_rich Low_complexity Low_complexity 1 48 0 209 266 0 0 chr6 7594604 7594668 -181684886 + (ATG)n Simple_repeat Simple_repeat 3 66 0 384 264 155 19 chr6 7594987 7595142 -181684412 + L1ME4a LINE L1 5323 5478 -643 405 280 88 16 chr6 7595235 7595417 -181684137 + L1ME4a LINE L1 5671 5865 -256 2305 96 0 0 chr6 7595586 7595889 -181683665 + AluSx SINE Alu 1 303 -9 2312 115 3 0 chr6 7596666 7596970 -181682584 + AluSp SINE Alu 1 305 -8 2025 146 7 0 chr6 7597148 7597442 -181682112 - AluJb SINE Alu -16 296 1 252 0 0 0 chr6 7598327 7598355 -181681199 + (TG)n Simple_repeat Simple_repeat 2 29 0 2151 131 0 0 chr6 7598416 7598722 -181680832 + AluSx SINE Alu 1 306 -6 2527 61 0 3 chr6 7599295 7599606 -181679948 + AluY SINE Alu 2 311 0 517 194 0 20 chr6 7599668 7599766 -181679788 + FLAM_A SINE Alu 41 136 -6 638 243 153 16 chr6 7601630 7601819 -181677735 - MER58C DNA MER1_type 0 215 1 1289 155 120 11 chr6 7601827 7602111 -181677443 + MER33 DNA MER1_type 1 315 -9 1857 149 42 0 chr6 7603124 7603413 -181676141 - AluSx SINE Alu -11 301 1 1707 148 102 31 chr6 7603517 7603842 -181675712 - MER7A DNA MER2_type 0 346 1 321 327 26 18 chr6 7604579 7604692 -181674862 - L2 LINE L2 -489 2825 2712 586 215 74 0 chr6 7605084 7605247 -181674307 + MER104 DNA MER2_type 4 178 -2 1345 174 4 8 chr6 7606830 7607065 -181672489 - MER46A DNA MER2_type 0 236 3 234 91 0 0 chr6 7607212 7607245 -181672309 + (T)n Simple_repeat Simple_repeat 1 33 0 213 121 0 0 chr6 7607385 7607418 -181672136 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1962 168 3 0 chr6 7607421 7607731 -181671823 - AluJb SINE Alu -1 311 1 4786 141 59 50 chr6 7607755 7608097 -181671457 - L1MB3 LINE L1 -1 6182 5845 1935 137 7 7 chr6 7608097 7608396 -181671158 - AluSx SINE Alu -13 299 1 4786 141 59 50 chr6 7608396 7608922 -181670632 - L1MB3 LINE L1 -338 5845 5307 1334 209 10 39 chr6 7608922 7609228 -181670326 - AluJo SINE Alu -15 297 1 4786 141 59 50 chr6 7609228 7609419 -181670135 - L1MB3 LINE L1 -876 5307 5119 2067 136 3 3 chr6 7609476 7609771 -181669783 - AluSx SINE Alu -17 295 1 193 277 77 31 chr6 7610035 7610100 -181669454 + L2 LINE L2 3246 3313 0 2382 97 3 0 chr6 7610144 7610455 -181669099 - AluSp SINE Alu -1 312 1 876 134 20 7 chr6 7610457 7610606 -181668948 - AluYa8 SINE Alu -10 300 150 304 95 0 0 chr6 7610606 7610648 -181668906 - AluSq SINE Alu -129 174 133 513 0 0 0 chr6 7610648 7610705 -181668849 + (TG)n Simple_repeat Simple_repeat 2 58 0 1905 131 4 0 chr6 7610705 7610973 -181668581 - AluSg SINE Alu -28 282 14 299 29 0 0 chr6 7610973 7611007 -181668547 - AluY SINE Alu -251 50 17 1136 133 5 51 chr6 7611007 7611202 -181668352 - AluSx SINE Alu -124 188 3 180 0 0 0 chr6 7611230 7611250 -181668304 + (A)n Simple_repeat Simple_repeat 1 20 0 1507 165 64 32 chr6 7613214 7613513 -181666041 - MER58D DNA MER1_type -2050 370 82 2267 105 0 0 chr6 7613513 7613807 -181665747 + AluSx SINE Alu 1 294 -18 2194 99 14 3 chr6 7613807 7614101 -181665453 + AluSx SINE Alu 1 297 -15 1507 165 64 32 chr6 7614101 7614145 -181665409 - MER58D DNA MER1_type -2337 83 15 30 77 0 0 chr6 7614448 7614513 -181665041 + AT_rich Low_complexity Low_complexity 1 65 0 2430 202 7 0 chr6 7616177 7616602 -181662952 + Tigger7 DNA MER2_type 2 429 -304 1385 162 131 4 chr6 7616602 7616861 -181662693 + AluJo SINE Alu 16 307 -5 2433 130 46 23 chr6 7616861 7617252 -181662302 + Tigger7 DNA MER2_type 440 839 -1648 1570 136 62 0 chr6 7617251 7617493 -181662061 + Tigger7 DNA MER2_type 2227 2483 -4 * 2497 51 14 0 chr6 7617801 7618095 -181661459 + AluY SINE Alu 1 298 -13 999 164 0 0 chr6 7618108 7618267 -181661287 + FRAM SINE Alu 1 159 -17 1953 137 3 22 chr6 7618400 7618714 -181660840 + AluJb SINE Alu 5 312 0 22 0 0 0 chr6 7619129 7619151 -181660403 + AT_rich Low_complexity Low_complexity 1 22 0 1180 235 256 14 chr6 7619483 7620246 -181659308 - L2 LINE L2 0 3313 2369 2268 107 13 0 chr6 7621384 7621684 -181657870 - AluSx SINE Alu -8 304 1 217 182 23 23 chr6 7622585 7622629 -181656925 + MIR SINE MIR 141 184 -78 456 277 45 6 chr6 7622751 7622928 -181656626 + L1MC5 LINE L1 7260 7443 -518 2367 105 0 0 chr6 7622943 7623238 -181656316 + AluSg SINE Alu 1 295 -15 583 215 90 65 chr6 7623281 7623635 -181655919 + L1MC5 LINE L1 7554 7916 -45 693 138 16 16 chr6 7623656 7623779 -181655775 - AluJo/FRAM SINE Alu -25 287 165 369 97 113 0 chr6 7623779 7623841 -181655713 - AluJ/FLAM SINE Alu -233 69 1 2553 84 0 0 chr6 7624181 7624492 -181655062 + AluSx SINE Alu 1 311 -1 595 219 47 111 chr6 7624498 7624795 -181654759 + L2 LINE L2 3030 3307 -6 2220 100 43 0 chr6 7625200 7625499 -181654055 + AluSx SINE Alu 1 312 0 240 265 45 106 chr6 7625905 7626037 -181653517 + MIR3 SINE MIR 76 199 -9 2353 107 0 0 chr6 7626118 7626427 -181653127 + AluY SINE Alu 1 309 -2 1845 90 13 87 chr6 7626745 7627044 -181652510 - AluSq SINE Alu -6 307 31 8572 157 42 30 chr6 7627044 7628720 -181650834 + pTR5 LTR ERV1 743 2438 0 1579 183 39 0 chr6 7628871 7629156 -181650398 + AluSq SINE Alu 1 296 -17 297 230 59 16 chr6 7629226 7629320 -181650234 + MIR3 SINE MIR 80 162 -46 703 184 160 10 chr6 7629324 7629530 -181650024 + MER33 DNA MER1_type 1 237 -87 1684 164 29 0 chr6 7629656 7629931 -181649623 + AluJo SINE Alu 1 283 -29 720 163 81 73 chr6 7630298 7630313 -181649241 - L1MA4 LINE L1 -2 6298 6285 2344 96 0 3 chr6 7630313 7630606 -181648948 + AluSg SINE Alu 1 292 -18 720 163 81 73 chr6 7630606 7630715 -181648839 - L1MA4 LINE L1 -15 6285 6178 2028 130 0 42 chr6 7630715 7631022 -181648532 + AluSx SINE Alu 1 294 -18 720 163 81 73 chr6 7631022 7631142 -181648412 - L1MA4 LINE L1 -122 6178 6051 2187 101 30 7 chr6 7631623 7631919 -181647635 - AluSq SINE Alu -10 303 1 22 0 0 0 chr6 7632030 7632052 -181647502 + AT_rich Low_complexity Low_complexity 1 22 0 1573 190 46 23 chr6 7632080 7632385 -181647169 + AluJo SINE Alu 1 312 0 234 239 111 43 chr6 7632645 7632750 -181646804 + MIR3 SINE MIR 51 162 -46 2132 116 7 3 chr6 7635095 7635387 -181644167 - AluSx SINE Alu -19 293 1 919 98 53 0 chr6 7635457 7635589 -181643965 + MER85 DNA T2_type 1 139 0 1780 173 23 23 chr6 7635644 7635950 -181643604 - AluJb SINE Alu -6 306 1 233 213 0 0 chr6 7636281 7636328 -181643226 + (CA)n Simple_repeat Simple_repeat 2 48 0 2983 143 84 2 chr6 7636610 7637637 -181641917 + L1M3f LINE L1 84 1216 -4112 2368 112 0 10 chr6 7637647 7637959 -181641595 + AluSx SINE Alu 1 309 -3 2276 116 3 0 chr6 7638114 7638415 -181641139 - AluSx SINE Alu -10 302 1 1482 189 13 31 chr6 7638644 7639071 -181640483 + AluJb SINE Alu 1 448 -20 213 39 0 0 chr6 7639071 7639097 -181640457 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 1482 189 13 31 chr6 7639097 7639118 -181640436 + AluJb SINE Alu 448 468 0 2067 118 11 0 chr6 7639233 7639543 -181640011 + AluSp SINE Alu 1 313 0 2222 113 6 31 chr6 7639885 7640203 -181639351 - AluSg SINE Alu 0 310 1 1781 173 3 20 chr6 7640540 7640840 -181638714 - AluJo SINE Alu -12 300 6 377 198 79 0 chr6 7640940 7641066 -181638488 - HAL1 LINE L1 -134 2373 2238 539 179 9 9 chr6 7641119 7641225 -181638329 - FLAM_A SINE Alu -9 133 28 298 328 129 23 chr6 7641233 7641629 -181637925 - HAL1 LINE L1 -345 2162 1725 245 167 139 100 chr6 7641599 7641736 -181637818 - HAL1 LINE L1 -1330 1177 1030 * 2462 70 0 10 chr6 7641736 7642048 -181637506 + AluSc SINE Alu 1 309 0 245 167 139 100 chr6 7642048 7642090 -181637464 - HAL1 LINE L1 -1477 1030 991 331 176 0 44 chr6 7642110 7642178 -181637376 + MER74C LTR ERVL 6 70 -390 386 221 101 40 chr6 7642348 7642497 -181637057 - HAL1 LINE L1 -1994 513 356 7039 170 93 39 chr6 7642537 7644146 -181635408 + pTR5 LTR ERV1 743 2438 0 319 113 72 124 chr6 7644727 7644805 -181634749 - MER97a DNA MER1_type? -719 175 101 1705 168 0 14 chr6 7644805 7645096 -181634458 - AluJb SINE Alu -25 287 1 319 113 72 124 chr6 7645096 7645114 -181634440 - MER97a DNA MER1_type? -793 101 84 202 273 0 0 chr6 7645347 7645391 -181634163 - L2 LINE L2 -2 3311 3268 2109 116 10 0 chr6 7645434 7645726 -181633828 + AluSq SINE Alu 1 295 -18 2280 79 0 40 chr6 7645726 7646029 -181633525 + AluY SINE Alu 1 292 -19 2159 115 3 16 chr6 7646071 7646385 -181633169 - AluSx SINE Alu -2 310 1 230 368 132 0 chr6 7646815 7646989 -181632565 - L2 LINE L2 -564 2750 2554 2102 135 21 12 chr6 7648008 7648342 -181631212 - MER1B DNA MER1_type 0 337 1 204 216 0 39 chr6 7648537 7648588 -181630966 - L2 LINE L2 -4 3309 3261 2264 65 135 29 chr6 7648817 7648928 -181630626 - MER51B LTR ERV1 0 377 279 2403 67 0 51 chr6 7648928 7649243 -181630311 + AluY SINE Alu 1 299 -12 2264 65 135 29 chr6 7649243 7649472 -181630082 - MER51B LTR ERV1 -98 279 1 230 195 0 0 chr6 7649700 7649741 -181629813 + L2 LINE L2 3226 3266 -6 206 323 157 15 chr6 7649747 7650078 -181629476 - L2 LINE L2 -341 2973 2596 2318 103 0 22 chr6 7650153 7650472 -181629082 + AluSq SINE Alu 1 312 -1 1847 179 33 0 chr6 7650516 7650818 -181628736 - AluJo SINE Alu 0 312 1 2381 99 0 0 chr6 7651149 7651451 -181628103 - AluSg SINE Alu -7 303 2 21 0 0 0 chr6 7651569 7651590 -181627964 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 7651901 7651922 -181627632 + (CAG)n Simple_repeat Simple_repeat 1 21 0 2432 91 10 0 chr6 7652039 7652348 -181627206 - AluSx SINE Alu 0 312 1 1955 117 20 34 chr6 7652518 7652816 -181626738 - AluSx SINE Alu -18 294 1 2120 181 48 9 chr6 7652818 7653260 -181626294 + L1MB7 LINE L1 5706 6164 -20 272 307 50 55 chr6 7653406 7653644 -181625910 - L1MC4a LINE L1 -1753 6055 5819 1855 144 6 52 chr6 7653707 7653817 -181625737 - AluJo SINE Alu 0 312 198 4670 126 96 21 chr6 7653817 7654581 -181624973 + LTR1B LTR ERV1 4 824 -2 1855 144 6 52 chr6 7654581 7654797 -181624757 - AluJo SINE Alu -114 198 1 849 254 132 46 chr6 7654798 7655122 -181624432 - L1MC4a LINE L1 -2042 5766 5389 2279 114 3 0 chr6 7655122 7655428 -181624126 - AluSx SINE Alu -5 307 1 849 254 132 46 chr6 7655428 7655564 -181623990 - L1MC4a LINE L1 -2419 5389 5266 1839 146 28 24 chr6 7655696 7655984 -181623570 + AluJb SINE Alu 8 296 -16 2351 182 97 10 chr6 7656382 7656876 -181622678 + MLT1F1 LTR MaLR 20 556 -11 2281 94 3 0 chr6 7657007 7657295 -181622259 + AluSq SINE Alu 1 289 -24 1727 162 42 32 chr6 7657297 7657606 -181621948 - AluJb SINE Alu 0 312 1 7183 144 113 69 chr6 7657616 7659241 -181620313 + pTR5 LTR ERV1 742 2438 0 2573 196 86 18 chr6 7659279 7659850 -181619704 + LTR1B LTR ERV1 1 610 -216 2160 122 3 0 chr6 7659857 7660143 -181619411 + AluSq SINE Alu 7 293 -20 754 226 66 9 chr6 7660151 7660363 -181619191 - MER67B LTR ERV1 -437 224 1 1975 136 69 50 chr6 7660368 7660646 -181618908 - L1MB3 LINE L1 -69 6114 5843 2329 95 3 0 chr6 7660646 7660940 -181618614 + AluSg SINE Alu 2 296 -14 1975 136 69 50 chr6 7660940 7661090 -181618464 - L1MB3 LINE L1 -340 5843 5674 1710 141 94 0 chr6 7661090 7661366 -181618188 - AluJo SINE Alu -2 310 9 1975 136 69 50 chr6 7661366 7661400 -181618154 - L1MB3 LINE L1 -509 5674 5642 506 291 145 42 chr6 7661657 7661911 -181617643 + L2 LINE L2 2917 3220 -93 1305 182 164 33 chr6 7661911 7661959 -181617595 - MER93b LTR ERV1 0 373 333 2440 94 0 0 chr6 7661959 7662258 -181617296 + AluSc SINE Alu 1 299 -10 1305 182 164 33 chr6 7662258 7662539 -181617015 - MER93b LTR ERV1 -40 333 1 506 291 145 42 chr6 7662539 7662642 -181616912 + L2 LINE L2 3220 3311 -2 32 0 0 0 chr6 7663301 7663333 -181616221 + AT_rich Low_complexity Low_complexity 1 32 0 782 161 31 0 chr6 7663353 7663483 -181616071 + AluJb SINE Alu 179 312 0 629 153 6 123 chr6 7663483 7663631 -181615923 + L1MB3 LINE L1 5672 5799 -381 1811 140 16 23 chr6 7663631 7663766 -181615788 + AluJo SINE Alu 1 135 -177 2236 130 0 0 chr6 7663766 7664058 -181615496 + AluSx SINE Alu 1 292 -20 1811 140 16 23 chr6 7664058 7664230 -181615324 + AluJo SINE Alu 135 306 -6 629 153 6 123 chr6 7664230 7664251 -181615303 + L1MB3 LINE L1 5799 5821 -359 1007 143 15 35 chr6 7664252 7664455 -181615099 + L1MB3 LINE L1 5983 6181 -2 2168 107 19 29 chr6 7664455 7664770 -181614784 + L1MB3 LINE L1 5812 6131 -52 1981 119 40 0 chr6 7664770 7665048 -181614506 + AluSg SINE Alu 1 289 -21 2168 107 19 29 chr6 7665048 7665100 -181614454 + L1MB3 LINE L1 6131 6182 -1 305 209 86 29 chr6 7665512 7665617 -181613937 + LTR68 LTR ERV1 615 725 -15 371 284 30 12 chr6 7665681 7665763 -181613791 + L1P5 LINE L1 5276 5355 -796 2010 144 24 0 chr6 7665763 7666055 -181613499 + AluSx SINE Alu 1 299 -13 371 284 30 12 chr6 7666055 7666141 -181613413 + L1P5 LINE L1 5355 5447 -704 1313 179 0 60 chr6 7666230 7666515 -181613039 + L1MB8 LINE L1 5910 6177 -1 1215 113 88 29 chr6 7666523 7666763 -181612791 + L1MA9 LINE L1 6059 6312 0 1786 168 41 3 chr6 7666777 7667069 -181612485 + AluJb SINE Alu 2 304 -8 316 219 23 76 chr6 7667108 7667238 -181612316 + L1ME LINE L1 5455 5578 -543 392 270 103 17 chr6 7667293 7667467 -181612087 + L1ME LINE L1 5581 5769 -393 535 269 32 56 chr6 7667576 7667703 -181611851 + L1ME3A LINE L1 5706 5826 -344 2457 83 0 0 chr6 7667703 7668003 -181611551 + AluSx SINE Alu 1 300 -12 535 269 32 56 chr6 7668003 7668124 -181611430 + L1ME3A LINE L1 5826 5948 -222 465 232 168 0 chr6 7669401 7669553 -181610001 + MER5A DNA MER1_type 4 186 -3 1473 146 0 53 chr6 7670473 7670580 -181608974 - AluJo SINE Alu -76 236 125 2492 69 10 3 chr6 7670580 7670885 -181608669 - AluSx SINE Alu 0 312 6 1473 146 0 53 chr6 7670885 7671024 -181608530 - AluJo SINE Alu -187 125 3 346 234 76 21 chr6 7671078 7671223 -181608331 - L1ME4a LINE L1 -2 6119 5967 2283 96 3 3 chr6 7671617 7671908 -181607646 - AluSp SINE Alu -22 291 1 402 299 92 28 chr6 7672399 7672616 -181606938 + L2 LINE L2 1912 2142 -1172 3149 142 126 50 chr6 7672662 7673190 -181606364 - L1MB3 LINE L1 -14 6169 5683 1306 203 53 14 chr6 7673190 7673471 -181606083 - AluJo SINE Alu -20 292 1 1759 103 4 4 chr6 7673477 7673709 -181605845 - AluSc SINE Alu -16 293 62 3149 142 126 50 chr6 7673709 7673840 -181605714 - L1MB3 LINE L1 -504 5679 5452 1890 177 0 0 chr6 7673858 7674158 -181605396 - AluSx SINE Alu -12 300 1 2344 97 10 7 chr6 7674690 7674999 -181604555 + AluSx SINE Alu 1 310 -2 244 250 0 0 chr6 7675224 7675280 -181604274 + A-rich Low_complexity Low_complexity 1 56 0 318 285 112 43 chr6 7675425 7675857 -181603697 - L2 LINE L2 -211 3061 2585 366 250 0 43 chr6 7675928 7676020 -181603534 - L2 LINE L2 -24 3248 3161 770 157 8 0 chr6 7676046 7676167 -181603387 - MSTD LTR MaLR -2 394 273 2164 104 0 52 chr6 7676207 7676515 -181603039 + AluSx SINE Alu 1 292 -20 342 107 0 0 chr6 7676515 7676571 -181602983 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 930 150 7 0 chr6 7676597 7676737 -181602817 - AluJb SINE Alu -171 141 1 729 211 173 46 chr6 7676739 7676874 -181602680 - MSTD LTR MaLR -129 267 150 1615 173 0 22 chr6 7676874 7677151 -181602403 - AluJo SINE Alu -31 281 11 729 211 173 46 chr6 7677151 7677252 -181602302 - MSTD LTR MaLR -246 150 1 336 333 67 5 chr6 7677383 7677593 -181601961 - L2 LINE L2 -240 3032 2810 644 306 128 12 chr6 7677810 7678238 -181601316 - L2 LINE L2 -925 2389 1912 415 210 68 49 chr6 7679127 7679148 -181600406 + L1ME4a LINE L1 5957 5976 -145 2231 107 0 3 chr6 7679148 7679447 -181600107 + AluSc SINE Alu 1 298 -11 415 210 68 49 chr6 7679447 7679587 -181599967 + L1ME4a LINE L1 5976 6121 0 1690 165 0 0 chr6 7679639 7679905 -181599649 + AluJo SINE Alu 2 267 -45 2204 101 3 13 chr6 7680402 7680700 -181598854 - AluSq SINE Alu -18 295 1 2348 72 23 3 chr6 7681022 7681326 -181598228 + AluY SINE Alu 1 310 -1 240 35 0 0 chr6 7681864 7681893 -181597661 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2476 70 0 3 chr6 7681994 7682296 -181597258 - AluY SINE Alu -10 301 1 288 102 0 0 chr6 7682419 7682468 -181597086 + (A)n Simple_repeat Simple_repeat 1 49 0 1990 119 0 51 chr6 7684218 7684530 -181595024 + AluSx SINE Alu 1 296 -16 2407 230 51 24 chr6 7684786 7685525 -181594029 - L1M4 LINE L1 -1267 4879 4121 434 174 0 54 chr6 7685525 7685617 -181593937 - MER6 DNA MER2_type 0 865 58 1057 162 18 0 chr6 7685631 7685798 -181593756 - AluJo SINE Alu -142 170 1 515 167 29 29 chr6 7685803 7685905 -181593649 + MER6 DNA MER2_type 43 865 0 1457 202 0 73 chr6 7685905 7686002 -181593552 - L1M4 LINE L1 -2024 4122 4020 2185 148 42 0 chr6 7686002 7686380 -181593174 - L1MB3 LINE L1 -7 6176 5783 1457 202 0 73 chr6 7686380 7686654 -181592900 - L1M4 LINE L1 -2126 4020 3778 * 1955 186 20 18 chr6 7686650 7687049 -181592505 - L1MB3 LINE L1 -1091 5055 4656 230 250 16 0 chr6 7687110 7687154 -181592400 + MER5B DNA MER1_type 1 48 -130 2323 117 0 0 chr6 7687154 7687461 -181592093 - AluSx SINE Alu -5 307 1 230 250 16 0 chr6 7687461 7687480 -181592074 + MER5B DNA MER1_type 48 65 -113 2009 115 59 3 chr6 7687567 7687855 -181591699 - AluSx SINE Alu -8 304 1 2029 139 0 32 chr6 7687881 7688197 -181591357 - AluSx SINE Alu 0 312 7 338 272 44 0 chr6 7688540 7688654 -181590900 + MIR SINE MIR 119 237 -25 2121 98 39 3 chr6 7689226 7689511 -181590043 - AluSx SINE Alu -17 295 1 2034 144 0 10 chr6 7689613 7689919 -181589635 + AluJb SINE Alu 1 303 -9 1776 177 0 7 chr6 7690061 7690355 -181589199 - AluJo SINE Alu -20 292 1 201 367 69 25 chr6 7690502 7690777 -181588777 + L2 LINE L2 2928 3214 -58 1905 164 0 6 chr6 7691446 7691757 -181587797 + AluJo SINE Alu 1 309 -3 199 278 37 0 chr6 7691941 7691995 -181587559 - L2 LINE L2 -9 3263 3208 4753 175 36 14 chr6 7692755 7694293 -181585261 - L1MB4 LINE L1 0 6180 4611 257 253 13 13 chr6 7695422 7695501 -181584053 + L2 LINE L2 2571 2649 -665 2530 133 3 8 chr6 7695773 7696164 -181583390 + MLT1B LTR MaLR 2 567 0 314 284 45 8 chr6 7696220 7696354 -181583200 - L1MC4a LINE L1 -1878 5930 5792 2339 107 0 0 chr6 7696369 7696667 -181582887 - AluSx SINE Alu -14 298 1 211 275 44 33 chr6 7696809 7696900 -181582654 - MIR3 SINE MIR -28 180 89 219 224 69 0 chr6 7697095 7697153 -181582401 - MIR3 SINE MIR -35 173 112 231 114 227 0 chr6 7697181 7697225 -181582329 - L1MB5 LINE L1 -240 5934 5881 37 23 0 0 chr6 7697491 7697535 -181582019 + AT_rich Low_complexity Low_complexity 1 44 0 837 123 0 16 chr6 7697536 7697658 -181581896 - FLAM_C SINE Alu -22 121 2 244 244 52 43 chr6 7697908 7698023 -181581531 - L2 LINE L2 -190 3082 2967 22 0 0 0 chr6 7698406 7698428 -181581126 + AT_rich Low_complexity Low_complexity 1 22 0 1822 164 49 9 chr6 7698494 7698741 -181580813 + MER46B DNA MER2_type 14 154 -2577 16157 109 20 21 chr6 7698741 7701161 -181578393 - Tigger1 DNA MER2_type 0 2418 1 1822 164 49 9 chr6 7701161 7701242 -181578312 + MER46B DNA MER2_type 154 230 -6 360 43 0 0 chr6 7701242 7701288 -181578266 + (TG)n Simple_repeat Simple_repeat 1 46 0 1210 178 11 58 chr6 7701304 7701579 -181577975 - AluJo SINE Alu -16 296 35 1861 113 6 98 chr6 7702048 7702385 -181577169 + AluSp SINE Alu 1 306 -7 216 321 98 16 chr6 7702628 7702874 -181576680 - L2 LINE L2 -665 2649 2384 2369 97 0 0 chr6 7703205 7703504 -181576050 + AluSx SINE Alu 1 299 -13 2320 106 3 0 chr6 7703505 7703817 -181575737 + AluSp SINE Alu 1 313 0 1467 161 101 4 chr6 7705110 7705377 -181574177 - AluJo SINE Alu -13 299 7 2146 120 27 0 chr6 7705979 7706271 -181573283 + AluSx SINE Alu 1 300 -12 423 298 53 0 chr6 7706273 7706387 -181573167 + MIR3 SINE MIR 41 160 -48 541 224 36 73 chr6 7706387 7706579 -181572975 + MER63A DNA MER1_type 1 185 -25 3673 163 18 24 chr6 7708070 7708267 -181571287 + L1MB3 LINE L1 5476 5673 -510 2251 102 0 37 chr6 7708267 7708411 -181571143 + AluSx SINE Alu 1 149 -163 2209 113 3 0 chr6 7708411 7708702 -181570852 + AluSq SINE Alu 1 292 -21 2251 102 0 37 chr6 7708702 7708879 -181570675 + AluSx SINE Alu 149 310 -2 3673 163 18 24 chr6 7708879 7709393 -181570161 + L1MB3 LINE L1 5673 6183 0 1838 168 3 10 chr6 7709469 7709773 -181569781 - AluJb SINE Alu -10 302 1 2109 145 0 3 chr6 7709854 7710157 -181569397 + AluSx SINE Alu 9 310 -2 253 136 34 0 chr6 7710157 7710211 -181569343 + GA-rich Low_complexity Low_complexity 9 64 0 505 292 24 0 chr6 7710211 7710379 -181569175 + MIR SINE MIR 84 255 -7 899 146 0 0 chr6 7710379 7710509 -181569045 + FLAM_C SINE Alu 1 130 -3 1043 146 59 64 chr6 7711231 7711451 -181568103 + MER20 DNA MER1_type 1 219 0 2333 105 0 0 chr6 7711585 7711881 -181567673 + AluSx SINE Alu 2 297 -15 619 135 0 149 chr6 7711943 7712084 -181567470 - FLAM_C SINE Alu 0 143 24 730 264 28 14 chr6 7712575 7712791 -181566763 + MIR SINE MIR 42 260 -2 253 270 123 49 chr6 7713281 7713335 -181566219 + MER5B DNA MER1_type 1 50 -128 1372 169 126 8 chr6 7713335 7713596 -181565958 + AluJb SINE Alu 1 292 -20 253 270 123 49 chr6 7713596 7713704 -181565850 + MER5B DNA MER1_type 50 175 -3 200 267 33 0 chr6 7713720 7713780 -181565774 - MER5A DNA MER1_type 0 189 128 1979 150 3 3 chr6 7714350 7714644 -181564910 - AluJo SINE Alu -18 294 1 270 0 0 0 chr6 7715312 7715342 -181564212 + (CA)n Simple_repeat Simple_repeat 1 30 0 465 181 62 42 chr6 7715361 7715505 -181564049 - L1ME4a LINE L1 -1 6120 5974 2534 146 29 77 chr6 7715857 7716336 -181563218 - LTR32 LTR ERVL 0 471 16 775 224 29 6 chr6 7716663 7716837 -181562717 + MER5B DNA MER1_type 1 178 0 533 274 5 48 chr6 7716845 7717031 -181562523 + MER5B DNA MER1_type 1 178 0 252 312 18 37 chr6 7717141 7717250 -181562304 + MIR3 SINE MIR 12 118 -90 180 0 0 0 chr6 7717344 7717364 -181562190 + (TTTTTG)n Simple_repeat Simple_repeat 4 23 0 2394 77 3 3 chr6 7719306 7719604 -181559950 - AluSq SINE Alu -15 298 1 1705 165 43 16 chr6 7720248 7720551 -181559003 - AluJb SINE Alu -1 311 1 843 147 0 52 chr6 7721593 7721729 -181557825 - AluJb SINE Alu -181 131 3 1887 148 10 7 chr6 7722490 7722787 -181556767 + AluJo SINE Alu 3 300 -12 714 207 59 68 chr6 7722810 7722997 -181556557 - L1ME3A LINE L1 -5 6165 5979 2162 141 3 0 chr6 7722997 7723302 -181556252 - AluSx SINE Alu -6 306 1 714 207 59 68 chr6 7723302 7723351 -181556203 - L1ME3A LINE L1 -191 5979 5931 879 150 15 0 chr6 7724123 7724256 -181555298 - FAM SINE Alu -43 142 8 273 57 0 0 chr6 7724314 7724349 -181555205 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 2015 123 36 26 chr6 7725041 7725350 -181554204 + AluSx SINE Alu 1 312 0 2414 69 0 7 chr6 7726309 7726600 -181552954 - AluSc SINE Alu -20 289 1 183 129 0 0 chr6 7726735 7726766 -181552788 + (GGGAGA)n Simple_repeat Simple_repeat 5 35 0 412 314 24 39 chr6 7726835 7727042 -181552512 + MIR SINE MIR 59 262 0 262 307 71 55 chr6 7727038 7727165 -181552389 + L2 LINE L2 3139 3267 -5 * 2217 121 0 19 chr6 7727690 7728004 -181551550 + AluSq SINE Alu 1 308 -5 231 61 0 0 chr6 7728133 7728166 -181551388 + (T)n Simple_repeat Simple_repeat 1 33 0 598 292 56 64 chr6 7729139 7729499 -181550055 + L1ME3 LINE L1 5526 5882 -280 1956 148 23 0 chr6 7729503 7729808 -181549746 + AluSx SINE Alu 1 312 0 363 167 211 0 chr6 7730496 7730586 -181548968 - L1ME4a LINE L1 -40 6081 5973 299 250 180 57 chr6 7730649 7730877 -181548677 + MIR SINE MIR 7 262 0 1820 254 66 21 chr6 7731355 7731951 -181547603 + HAL1 LINE L1 1464 2089 -418 2123 99 3 78 chr6 7731951 7732285 -181547269 + AluSq SINE Alu 1 309 -4 2649 138 12 39 chr6 7732315 7732637 -181546917 + L1MB3 LINE L1 5700 6006 -177 1620 151 100 0 chr6 7732637 7732916 -181546638 - AluJb SINE Alu -5 307 1 2649 138 12 39 chr6 7732916 7733086 -181546468 + L1MB3 LINE L1 6006 6179 -4 700 161 110 0 chr6 7734559 7734677 -181544877 + FLAM_C SINE Alu 1 131 -2 380 264 125 50 chr6 7734736 7734827 -181544727 + L1ME4a LINE L1 5796 5879 -242 2456 92 0 0 chr6 7734827 7735133 -181544421 + AluSx SINE Alu 1 306 -6 380 264 125 50 chr6 7735133 7735344 -181544210 + L1ME4a LINE L1 5879 6121 0 265 106 0 45 chr6 7735567 7735633 -181543921 + (CAAAAA)n Simple_repeat Simple_repeat 2 64 0 1613 163 64 0 chr6 7735736 7736019 -181543535 - AluJb SINE Alu -11 301 1 225 0 0 0 chr6 7736410 7736435 -181543119 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 467 159 57 0 chr6 7736519 7736607 -181542947 + FLAM_A SINE Alu 48 140 -2 1645 197 10 3 chr6 7736695 7736994 -181542560 + AluJo SINE Alu 1 301 -11 1721 150 34 24 chr6 7737969 7738263 -181541291 - AluJb SINE Alu -15 297 1 1843 156 0 3 chr6 7738827 7739133 -181540421 + AluJb SINE Alu 1 305 0 255 103 0 0 chr6 7740071 7740110 -181539444 + (TG)n Simple_repeat Simple_repeat 2 40 0 2197 128 0 0 chr6 7740572 7740870 -181538684 - AluSx SINE Alu -8 304 7 267 286 29 29 chr6 7741115 7741181 -181538373 + Tigger8 DNA MER2_type 153 221 -445 2517 116 3 6 chr6 7741181 7741543 -181538011 + MER46B DNA MER2_type 1 236 0 267 286 29 29 chr6 7741543 7741581 -181537973 + Tigger8 DNA MER2_type 220 257 -409 21 0 0 0 chr6 7742857 7742878 -181536676 + GC_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr6 7744145 7744173 -181535381 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr6 7744827 7744849 -181534705 + (T)n Simple_repeat Simple_repeat 1 22 0 195 129 0 0 chr6 7745907 7745938 -181533616 + (T)n Simple_repeat Simple_repeat 1 31 0 21 57 0 0 chr6 7747804 7747839 -181531715 + AT_rich Low_complexity Low_complexity 1 35 0 394 227 31 10 chr6 7747932 7748029 -181531525 - MIR SINE MIR -116 146 48 1770 161 0 31 chr6 7748855 7749170 -181530384 - AluJo SINE Alu 0 306 1 2309 84 13 0 chr6 7749422 7749721 -181529833 + AluSg SINE Alu 2 304 -6 2501 61 3 0 chr6 7750586 7750882 -181528672 - AluSp SINE Alu -16 297 1 250 274 0 0 chr6 7751184 7751235 -181528319 + polypurine Low_complexity Low_complexity 3 53 0 1730 147 0 55 chr6 7751476 7751788 -181527766 - AluJb SINE Alu -17 295 1 22 0 0 0 chr6 7751796 7751818 -181527736 + AT_rich Low_complexity Low_complexity 1 22 0 2193 108 0 10 chr6 7752778 7753075 -181526479 + AluSx SINE Alu 1 294 -18 2331 98 0 23 chr6 7753711 7754018 -181525536 + AluSx SINE Alu 5 304 -8 446 151 54 0 chr6 7754465 7754558 -181524996 - L1MD3 LINE L1 0 7995 7898 744 154 0 16 chr6 7754570 7754693 -181524861 - FLAM_C SINE Alu -12 131 11 396 0 0 0 chr6 7755516 7755560 -181523994 + (CA)n Simple_repeat Simple_repeat 2 45 0 1640 181 3 37 chr6 7756090 7756388 -181523166 - AluJo SINE Alu -24 288 1 905 201 81 54 chr6 7756620 7756879 -181522675 + L1MC4 LINE L1 7655 7920 -122 635 186 55 125 chr6 7756876 7757121 -181522433 + L1MC4 LINE L1 7827 8042 0 * 597 231 36 34 chr6 7758621 7758798 -181520756 - L1MD3 LINE L1 0 7983 6191 2419 109 0 0 chr6 7758831 7759143 -181520411 + AluSx SINE Alu 1 312 0 1677 156 34 30 chr6 7759941 7760236 -181519318 - AluJb SINE Alu -5 307 12 2128 123 0 7 chr6 7762384 7762685 -181516869 - AluSg SINE Alu -11 299 1 983 84 0 63 chr6 7765389 7765531 -181514023 - AluSq/x SINE Alu -179 133 1 1721 110 23 0 chr6 7765991 7766254 -181513300 + L1MA4 LINE L1 6027 6295 -5 2245 84 3 17 chr6 7766296 7766594 -181512960 + AluSx SINE Alu 1 294 -18 2223 87 3 19 chr6 7767120 7767431 -181512123 + L1PA13 LINE L1 5858 6163 0 1096 217 18 5 chr6 7768051 7768272 -181511282 - MER58A DNA MER1_type 0 224 1 2330 102 3 0 chr6 7770986 7771280 -181508274 + AluSp SINE Alu 1 295 -18 21 0 0 0 chr6 7772610 7772631 -181506923 + AT_rich Low_complexity Low_complexity 1 21 0 194 281 16 31 chr6 7773872 7773936 -181505618 - MIR3 SINE MIR -136 72 10 1533 129 141 0 chr6 7774168 7774416 -181505138 - MER7A DNA MER2_type -6 340 60 755 156 170 22 chr6 7774417 7774552 -181505002 + FRAM SINE Alu 1 155 -11 267 173 0 0 chr6 7774552 7774604 -181504950 + (TG)n Simple_repeat Simple_repeat 1 52 0 365 192 14 27 chr6 7774604 7774677 -181504877 - MER7A DNA MER2_type -275 73 2 2109 200 39 33 chr6 7774678 7774730 -181504824 + L1MA9 LINE L1 5782 5832 -480 2512 73 0 3 chr6 7774730 7775033 -181504521 + AluSg SINE Alu 1 302 -8 2109 200 39 33 chr6 7775033 7775470 -181504084 + L1MA9 LINE L1 5832 6274 -38 372 200 118 0 chr6 7776425 7776510 -181503044 + MER103 DNA DNA 4 98 -68 1628 164 52 44 chr6 7777323 7777689 -181501865 - L1MB8 LINE L1 -225 5953 5585 234 0 0 0 chr6 7778755 7778781 -181500773 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 2046 107 4 0 chr6 7778785 7779055 -181500499 - AluSp SINE Alu -36 277 7 219 295 0 26 chr6 7779349 7779427 -181500127 + CT-rich Low_complexity Low_complexity 5 80 0 339 349 16 8 chr6 7780455 7780584 -181498970 - MIR SINE MIR -62 146 17 252 0 0 0 chr6 7783573 7783601 -181495953 + (TG)n Simple_repeat Simple_repeat 2 29 0 229 135 56 0 chr6 7783601 7783690 -181495864 + (TA)n Simple_repeat Simple_repeat 2 95 0 647 204 74 32 chr6 7789092 7789394 -181490160 - MLT1B LTR MaLR 0 390 1 2408 88 0 0 chr6 7789763 7790060 -181489494 + AluSg SINE Alu 1 297 -13 1964 257 137 44 chr6 7790357 7791442 -181488112 + L1MC4 LINE L1 6831 8016 -26 2213 106 0 0 chr6 7792129 7792430 -181487124 + AluJb SINE Alu 1 301 -11 553 213 81 0 chr6 7793132 7793268 -181486286 - MIR SINE MIR -59 203 57 329 297 82 61 chr6 7793549 7793898 -181485656 - L2 LINE L2 -218 3054 2694 * 859 239 5 50 chr6 7793895 7794117 -181485437 - MIR SINE MIR 0 262 51 567 289 186 48 chr6 7794165 7795014 -181484540 - L2 LINE L2 -650 2664 1699 22 0 0 0 chr6 7795109 7795131 -181484423 + AT_rich Low_complexity Low_complexity 1 22 0 526 288 108 9 chr6 7795919 7796131 -181483423 + MIR SINE MIR 1 233 -29 22 0 0 0 chr6 7796808 7796830 -181482724 + AT_rich Low_complexity Low_complexity 1 22 0 314 234 13 26 chr6 7796837 7796914 -181482640 + Tigger5 DNA MER2_type 1 76 -2247 540 103 13 13 chr6 7796963 7797041 -181482513 + Tigger5 DNA MER2_type 2245 2322 -1 2189 108 0 7 chr6 7797415 7797710 -181481844 + AluSx SINE Alu 1 293 -19 359 256 0 0 chr6 7798334 7798412 -181481142 - MIR3 SINE MIR -6 202 125 275 252 98 26 chr6 7798500 7798654 -181480900 - MIR SINE MIR -50 212 45 2251 86 3 10 chr6 7799299 7799600 -181479954 - AluY SINE Alu -12 299 1 2313 107 0 0 chr6 7799646 7799945 -181479609 + AluSx SINE Alu 1 299 -13 378 289 23 47 chr6 7800489 7800617 -181478937 + MIR3 SINE MIR 50 174 -34 819 126 80 7 chr6 7800732 7800883 -181478671 + L1MB3 LINE L1 6019 6180 -3 1835 162 8 64 chr6 7803090 7803284 -181476270 - MER2 DNA MER2_type -1 344 178 2011 156 3 0 chr6 7803284 7803586 -181475968 - AluSx SINE Alu -9 303 1 1835 162 8 64 chr6 7803586 7803749 -181475805 - MER2 DNA MER2_type -167 178 7 281 320 76 41 chr6 7804417 7804614 -181474940 + MIR SINE MIR 3 206 -56 273 141 84 42 chr6 7805370 7805441 -181474113 - L1MC5 LINE L1 -51 7910 7837 659 208 50 134 chr6 7806306 7806678 -181472876 - L1MD3 LINE L1 -1 8035 7709 1033 55 78 0 chr6 7807164 7807292 -181472262 - MER85 DNA T2_type -1 138 1 229 226 19 0 chr6 7807946 7807999 -181471555 + CT-rich Low_complexity Low_complexity 4 57 0 274 303 140 28 chr6 7808154 7808332 -181471222 + L2 LINE L2 2286 2483 -831 1858 163 3 0 chr6 7808470 7808758 -181470796 + AluJb SINE Alu 1 289 -23 459 320 105 31 chr6 7808876 7809170 -181470384 + L2 LINE L2 2871 3186 -86 2285 93 10 3 chr6 7809708 7810018 -181469536 + AluSq SINE Alu 1 312 -1 280 331 54 6 chr6 7810758 7810924 -181468630 + L1ME2 LINE L1 5734 5907 -257 21 0 0 0 chr6 7811114 7811135 -181468419 + AT_rich Low_complexity Low_complexity 1 21 0 325 298 33 26 chr6 7811179 7811196 -181468358 - L1MA10 LINE L1 -1 6333 6317 968 239 95 20 chr6 7811196 7811544 -181468010 - L1ME1 LINE L1 -8 6158 5785 265 209 30 15 chr6 7811879 7811946 -181467608 - MER116 DNA Mariner -6 74 7 206 306 118 0 chr6 7812257 7812342 -181467212 + L2 LINE L2 3126 3220 -52 1394 162 4 9 chr6 7812512 7812741 -181466813 - AluJo SINE Alu -56 256 29 640 139 165 26 chr6 7812790 7812905 -181466649 - FLAM_C SINE Alu -2 131 1 2006 139 27 0 chr6 7814590 7814891 -181464663 + AluJo SINE Alu 1 309 -3 2147 138 55 17 chr6 7814966 7815314 -181464240 + MER46B DNA MER2_type 1 236 0 3469 213 36 46 chr6 7815376 7815929 -181463625 - MER21B LTR ERV1 -31 832 290 2177 112 7 0 chr6 7815929 7816223 -181463331 + AluSx SINE Alu 1 296 -16 3469 213 36 46 chr6 7816223 7816510 -181463044 - MER21B LTR ERV1 -573 290 1 223 322 50 41 chr6 7816517 7816638 -181462916 + L2 LINE L2 2574 2695 -619 1141 88 0 0 chr6 7816799 7816946 -181462608 + AluSg/x SINE Alu 153 299 -13 2382 295 188 22 chr6 7817178 7817799 -181461755 + L2 LINE L2 1500 2017 -1296 2306 78 14 0 chr6 7817799 7818095 -181461459 - AluSq SINE Alu -13 300 1 2382 295 188 22 chr6 7818095 7819029 -181460525 + L2 LINE L2 2017 3313 0 212 261 39 100 chr6 7820340 7820470 -181459084 + L2 LINE L2 1333 1454 -1860 284 339 125 0 chr6 7820515 7820707 -181458847 - MIR SINE MIR -16 246 31 181 300 0 0 chr6 7820709 7820769 -181458785 + L2 LINE L2 3207 3266 -6 906 105 8 0 chr6 7821175 7821299 -181458255 + AluJb SINE Alu 7 131 -181 1566 173 0 91 chr6 7821477 7821835 -181457719 - MLT2D LTR ERVL 0 414 94 462 252 9 0 chr6 7822433 7822544 -181457010 - MLT2D LTR ERVL -302 112 1 248 26 26 51 chr6 7822750 7822789 -181456765 - MER69 DNA AcHobo -42 2484 2447 1511 191 0 29 chr6 7822793 7823066 -181456488 + AluJo SINE Alu 3 267 -45 914 270 9 0 chr6 7823420 7823642 -181455912 - MER58A DNA MER1_type 0 224 1 2100 122 3 0 chr6 7824681 7824985 -181454569 + AluSx SINE Alu 1 305 -7 331 320 36 77 chr6 7825873 7826067 -181453487 + L1ME LINE L1 5268 5453 -709 2569 121 33 51 chr6 7826195 7826648 -181452906 + MER65A LTR ERV1 1 445 0 735 300 58 8 chr6 7826654 7826897 -181452657 - MIR SINE MIR -4 258 4 287 146 18 0 chr6 7827259 7827314 -181452240 + T-rich Low_complexity Low_complexity 4 59 0 1734 166 13 7 chr6 7827316 7827618 -181451936 - AluSx SINE Alu -8 304 1 1946 138 0 16 chr6 7828037 7828355 -181451199 - AluSq SINE Alu 0 313 1 228 341 0 24 chr6 7828364 7828446 -181451108 + LTR67 LTR ERVL 98 177 -380 * 820 272 46 79 chr6 7828382 7828617 -181450937 + MLT1J LTR MaLR 110 326 -185 1404 217 117 42 chr6 7828617 7828684 -181450870 - MLT1C LTR MaLR -4 463 402 1505 66 0 0 chr6 7828684 7828867 -181450687 + AluY SINE Alu 1 183 -128 1404 217 117 42 chr6 7828867 7829228 -181450326 - MLT1C LTR MaLR -65 402 3 820 272 46 79 chr6 7829228 7829408 -181450146 + MLT1J LTR MaLR 326 511 0 473 0 0 17 chr6 7829412 7829470 -181450084 + (TCCA)n Simple_repeat Simple_repeat 1 57 0 2328 76 0 0 chr6 7829639 7829943 -181449611 + AluY SINE Alu 1 304 -7 230 281 0 16 chr6 7830096 7830160 -181449394 + GA-rich Low_complexity Low_complexity 1 63 0 1206 167 9 14 chr6 7831617 7831827 -181447727 + MLT1A1 LTR MaLR 18 226 -139 357 194 16 0 chr6 7831817 7831879 -181447675 - MER115 DNA AcHobo -467 226 164 * 465 276 0 98 chr6 7882385 7882559 -181396995 + MER5B DNA MER1_type 1 157 -21 1387 60 0 0 chr6 7882710 7882876 -181396678 - AluSg/x SINE Alu -11 299 134 957 248 16 33 chr6 7883072 7883378 -181396176 + L1MC4 LINE L1 6788 7088 -954 375 231 103 17 chr6 7883407 7883524 -181396030 + L1MC5 LINE L1 6982 7108 -853 299 181 162 29 chr6 7883587 7883692 -181395862 + L1MC5 LINE L1 7109 7227 -734 694 264 184 48 chr6 7883760 7884070 -181395484 - MLT1H LTR MaLR -173 394 43 331 269 195 62 chr6 7884106 7884363 -181395191 - MLT1H-int LTR MaLR -7 1364 1074 1162 265 31 55 chr6 7884658 7885140 -181394414 + L1MC5 LINE L1 7304 7771 -190 1718 182 0 7 chr6 7885140 7885437 -181394117 + AluJb SINE Alu 1 295 -17 1162 265 31 55 chr6 7885437 7885536 -181394018 + L1MC5 LINE L1 7771 7871 -90 847 218 0 0 chr6 7885575 7885722 -181393832 - FRAM SINE Alu -30 146 1 2272 116 3 0 chr6 7886107 7886418 -181393136 - AluSp SINE Alu 0 313 2 1203 273 104 67 chr6 7886535 7886670 -181392884 - HAL1 LINE L1 -53 2454 2325 2096 117 3 22 chr6 7886670 7886986 -181392568 + AluSx SINE Alu 1 310 -2 1203 273 104 67 chr6 7886986 7887609 -181391945 - HAL1 LINE L1 -182 2325 1668 1013 214 117 16 chr6 7887682 7887999 -181391555 - LTR16A LTR ERVL -36 414 66 1394 331 58 36 chr6 7888404 7889309 -181390245 - HERV16 LTR ERVL -697 5067 4144 759 293 21 45 chr6 7889304 7889486 -181390068 - HERV16 LTR ERVL -2225 2771 2586 * 2874 122 7 23 chr6 7889486 7889920 -181389634 - MSTC LTR MaLR 0 428 2 759 293 21 45 chr6 7889920 7889936 -181389618 - HERV16 LTR ERVL -2410 2586 2571 2196 120 13 0 chr6 7889936 7890237 -181389317 - AluSx SINE Alu -7 305 1 759 293 21 45 chr6 7890237 7890327 -181389227 - HERV16 LTR ERVL -2425 2571 2489 2301 276 79 22 chr6 7890332 7892053 -181387501 - HERV16 LTR ERVL -2665 2331 401 3251 183 13 7 chr6 7892075 7892686 -181386868 - L1MB8 LINE L1 -2 6176 5562 6071 178 17 12 chr6 7892691 7893834 -181385720 + L1PA16 LINE L1 4040 5196 -970 2030 132 17 7 chr6 7893834 7894129 -181385425 + AluSq SINE Alu 1 298 -15 6071 178 17 12 chr6 7894129 7894558 -181384996 + L1PA16 LINE L1 5196 5621 -545 3840 89 10 43 chr6 7894582 7894972 -181384582 + L1PA16 LINE L1 5598 5964 -202 1839 181 3 0 chr6 7894972 7895275 -181384279 + AluJo SINE Alu 1 304 -8 3840 89 10 43 chr6 7895275 7895471 -181384083 + L1PA16 LINE L1 5964 6165 -1 2224 152 38 47 chr6 7895472 7896165 -181383389 - L1MB8 LINE L1 -606 5572 4871 282 230 54 0 chr6 7896287 7896361 -181383193 + L1P LINE L1 3703 3780 -2366 1384 86 50 10 chr6 7896450 7896648 -181382906 - AluSg/x SINE Alu -16 294 89 799 157 0 15 chr6 7896662 7896796 -181382758 - FLAM_C SINE Alu -1 132 1 299 211 26 0 chr6 7896952 7897028 -181382526 + L1M4 LINE L1 5017 5094 -1052 2001 160 31 0 chr6 7897045 7897364 -181382190 - MER7A DNA MER2_type -19 327 1 506 289 11 42 chr6 7897935 7898125 -181381429 - HERV16 LTR ERVL -4803 193 10 456 271 30 15 chr6 7898368 7898501 -181381053 + MLT1L LTR MaLR 128 262 -353 286 296 46 9 chr6 7898635 7898743 -181380811 + MLT1L LTR MaLR 496 607 -8 1409 110 8 55 chr6 7899278 7899515 -181380039 + MLT1B LTR MaLR 4 229 -161 1743 176 47 52 chr6 7899524 7899911 -181379643 - MLT1B LTR MaLR 0 390 6 833 148 0 15 chr6 7899912 7900047 -181379507 + AluJo SINE Alu 1 133 -169 1111 142 11 11 chr6 7900096 7900286 -181379268 + AluJo SINE Alu 122 311 -1 984 189 28 18 chr6 7900355 7900572 -181378982 - MER20 DNA MER1_type 0 219 1 1946 165 30 12 chr6 7901075 7901482 -181378072 - MLT1B LTR MaLR -34 433 5 227 306 47 24 chr6 7903393 7903478 -181376076 - MIR SINE MIR -147 115 29 369 253 205 18 chr6 7904032 7904198 -181375356 + MIR SINE MIR 50 246 -16 371 259 94 55 chr6 7904418 7904619 -181374935 - L2 LINE L2 -17 3296 3088 1086 257 105 34 chr6 7904696 7905268 -181374286 + MLT2F LTR ERVL 2 651 -12 2368 104 0 0 chr6 7905270 7905568 -181373986 - AluSq SINE Alu -15 298 1 346 274 170 72 chr6 7905996 7906397 -181373157 - MLT1J2 LTR MaLR -9 441 2 2372 108 0 6 chr6 7906679 7906993 -181372561 - AluSx SINE Alu 0 312 1 2317 171 23 0 chr6 7907624 7907976 -181371578 + MLT2D LTR ERVL 1 364 -50 823 85 15 0 chr6 7907976 7908106 -181371448 + (TCTA)n Simple_repeat Simple_repeat 3 134 0 2317 171 23 0 chr6 7908106 7908146 -181371408 + MLT2D LTR ERVL 364 402 -12 2310 115 0 0 chr6 7909508 7909813 -181369741 - AluSx SINE Alu -7 305 1 457 261 48 30 chr6 7910003 7910168 -181369386 + MIR3 SINE MIR 38 205 -3 241 326 7 43 chr6 7910240 7910378 -181369176 - L2 LINE L2 -7 3265 3133 3695 143 50 16 chr6 7910909 7911523 -181368031 - MER41B LTR ERV1 0 635 1 180 143 0 0 chr6 7911759 7911801 -181367753 + (T)n Simple_repeat Simple_repeat 1 42 0 2095 104 21 7 chr6 7913711 7913998 -181365556 + AluSq SINE Alu 1 291 -22 185 0 0 39 chr6 7914009 7914035 -181365519 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 837 174 43 31 chr6 7914283 7914444 -181365110 + FRAM SINE Alu 1 163 -3 248 310 106 21 chr6 7914562 7914704 -181364850 + MIR3 SINE MIR 32 185 -23 190 242 97 16 chr6 7914993 7915055 -181364499 + MIR SINE MIR 58 124 -84 1403 145 5 5 chr6 7915336 7915550 -181364004 + AluJo SINE Alu 86 299 -13 1165 136 44 29 chr6 7916332 7916538 -181363016 + MER3 DNA MER1_type 1 209 0 675 190 8 0 chr6 7917371 7917492 -181362062 + FLAM_C SINE Alu 1 122 -11 21 0 0 0 chr6 7917492 7917513 -181362041 + AT_rich Low_complexity Low_complexity 1 21 0 2842 230 56 6 chr6 7918344 7919019 -181360535 + L1ME1 LINE L1 5441 6149 -17 808 176 150 31 chr6 7919147 7919254 -181360300 - L1ME3A LINE L1 -13 6157 6064 1890 167 6 3 chr6 7919254 7919565 -181359989 + AluJb SINE Alu 1 312 0 808 176 150 31 chr6 7919565 7919684 -181359870 - L1ME3A LINE L1 -106 6064 5904 331 309 133 24 chr6 7920966 7921131 -181358423 - MIR3 SINE MIR -5 203 21 284 211 18 0 chr6 7921728 7921785 -181357769 - MLT1K LTR MaLR -20 568 511 250 282 0 68 chr6 7921785 7921831 -181357723 - LTR67 LTR ERVL -18 539 444 183 235 0 0 chr6 7921898 7921949 -181357605 + C-rich Low_complexity Low_complexity 3 53 0 2305 98 3 13 chr6 7921983 7922299 -181357255 - AluSq SINE Alu 0 313 1 375 23 0 0 chr6 7923381 7923425 -181356129 + (TAA)n Simple_repeat Simple_repeat 2 45 0 327 338 52 0 chr6 7923710 7923846 -181355708 - MIR SINE MIR -73 189 47 367 322 90 6 chr6 7924011 7924188 -181355366 - MIR SINE MIR -25 237 46 1336 158 4 58 chr6 7924293 7924553 -181355001 - AluJo SINE Alu -15 297 52 205 371 57 9 chr6 7924571 7924676 -181354878 - L2 LINE L2 -4 3268 3159 849 239 36 54 chr6 7924829 7925109 -181354445 - ORSL DNA AcHobo 0 275 1 339 106 0 0 chr6 7925275 7925322 -181354232 - AluJb SINE Alu -4 298 252 616 174 9 17 chr6 7925339 7925454 -181354100 + ORSL DNA AcHobo 151 264 -11 1737 144 0 4 chr6 7925458 7925714 -181353840 - AluJb SINE Alu -57 255 1 363 158 29 14 chr6 7925986 7926125 -181353429 + (TA)n Simple_repeat Simple_repeat 1 141 0 681 200 0 24 chr6 7926162 7926287 -181353267 - AluJb SINE Alu -184 128 7 2273 116 3 0 chr6 7927501 7927804 -181351750 - AluSx SINE Alu -8 304 1 193 305 203 34 chr6 7927929 7928047 -181351507 + L2 LINE L2 3133 3270 -2 26 0 0 0 chr6 7929469 7929495 -181350059 + AT_rich Low_complexity Low_complexity 1 26 0 2302 139 21 10 chr6 7929664 7929738 -181349816 + LTR51 LTR ERV1 1 73 -598 2231 115 3 0 chr6 7929738 7930042 -181349512 + AluSg SINE Alu 1 305 -5 2302 139 21 10 chr6 7930042 7930587 -181348967 + LTR51 LTR ERV1 73 671 0 2366 108 0 0 chr6 7930724 7931031 -181348523 + AluSx SINE Alu 1 307 -5 371 269 23 0 chr6 7931415 7931519 -181348035 - MIR SINE MIR -57 151 45 985 203 98 51 chr6 7931991 7932065 -181347489 + L1ME3A LINE L1 5862 5931 -239 2089 150 129 5 chr6 7932065 7932446 -181347108 - MSTA LTR MaLR 0 428 1 985 203 98 51 chr6 7932446 7932666 -181346888 + L1ME3A LINE L1 5931 6170 0 281 247 0 67 chr6 7933986 7934075 -181345479 - MIR SINE MIR -71 191 109 300 291 78 28 chr6 7934542 7934683 -181344871 - L2 LINE L2 -203 3069 2922 1624 196 27 46 chr6 7935083 7935408 -181344146 + MLT1A1 LTR MaLR 5 324 -41 2331 84 0 47 chr6 7935408 7935729 -181343825 - AluSq SINE Alu -7 306 1 1624 196 27 46 chr6 7935729 7935771 -181343783 + MLT1A1 LTR MaLR 324 365 0 1852 154 0 29 chr6 7935817 7936146 -181343408 - AluJo SINE Alu 0 312 1 217 340 212 17 chr6 7937179 7938061 -181341493 + L2 LINE L2 1710 2763 -551 206 299 26 0 chr6 7938169 7938246 -181341308 + L2 LINE L2 2894 2972 -300 1210 102 81 106 chr6 7938875 7939029 -181340525 - MER30 DNA MER1_type 0 230 83 2501 57 3 0 chr6 7939029 7939326 -181340228 - AluY SINE Alu -13 298 1 1210 102 81 106 chr6 7939326 7939407 -181340147 - MER30 DNA MER1_type -147 83 1 1803 185 22 27 chr6 7940241 7940608 -181338946 - MLT1A1 LTR MaLR 0 365 1 1995 268 50 23 chr6 7941401 7941964 -181337590 - MLT1E LTR MaLR 0 593 16 1523 317 125 29 chr6 7942109 7943369 -181336185 + L2 LINE L2 1618 2996 -276 373 248 108 8 chr6 7943397 7943526 -181336028 + L2 LINE L2 3158 3299 -14 261 271 60 53 chr6 7943723 7943856 -181335698 + L2 LINE L2 3132 3265 -7 362 171 13 13 chr6 7944876 7944952 -181334602 - L2 LINE L2 0 3313 3238 2004 179 6 0 chr6 7945434 7945791 -181333763 + L1MDb LINE L1 793 1151 -5392 5730 136 42 2 chr6 7945791 7946695 -181332859 + L1MC1 LINE L1 5394 6333 0 3845 204 61 75 chr6 7946688 7946887 -181332667 + L1MDb LINE L1 1110 1310 -5230 * 1242 63 0 0 chr6 7946887 7947045 -181332509 + L1PA3 LINE L1 5998 6155 0 3845 204 61 75 chr6 7947045 7947747 -181331807 + L1MDb LINE L1 1310 2021 -4519 2947 6 0 0 chr6 7947747 7948058 -181331496 + AluY SINE Alu 1 311 0 3845 204 61 75 chr6 7948058 7948222 -181331332 + L1MDb LINE L1 2021 2186 -4354 2093 138 0 3 chr6 7948222 7948518 -181331036 + AluJb SINE Alu 1 295 -17 3845 204 61 75 chr6 7948518 7948816 -181330738 + L1MDb LINE L1 2186 2455 -4085 2229 116 3 0 chr6 7949055 7949349 -181330205 - AluSq SINE Alu -18 295 1 1014 197 56 16 chr6 7949431 7949680 -181329874 - L1MC3 LINE L1 0 7785 7527 1880 79 0 0 chr6 7949709 7949938 -181329616 + AluY SINE Alu 82 310 -1 715 281 32 32 chr6 7950324 7950570 -181328984 + L2 LINE L2 2518 2763 -551 988 238 71 29 chr6 7950610 7950921 -181328633 - L1ME3A LINE L1 -5 6165 5842 767 269 88 30 chr6 7951007 7951312 -181328242 + L2 LINE L2 2818 3140 -173 1220 243 40 6 chr6 7951322 7951641 -181327913 - MLT1E2 LTR MaLR 0 626 271 321 175 225 33 chr6 7951697 7951817 -181327737 + L2 LINE L2 3171 3313 0 1727 120 7 80 chr6 7952863 7953162 -181326392 - AluJb SINE Alu -12 300 24 189 107 0 0 chr6 7954507 7954535 -181325019 + (TG)n Simple_repeat Simple_repeat 2 29 0 2360 133 17 0 chr6 7954569 7954923 -181324631 - MER46B DNA MER2_type 0 236 2 22 0 0 0 chr6 7956753 7956775 -181322779 + GC_rich Low_complexity Low_complexity 1 22 0 185 160 0 20 chr6 7957620 7957670 -181321884 + (CCG)n Simple_repeat Simple_repeat 1 49 0 222 62 0 0 chr6 7957807 7957839 -181321715 + (CAG)n Simple_repeat Simple_repeat 3 34 0 26 88 0 0 chr6 7958331 7958399 -181321155 + GC_rich Low_complexity Low_complexity 1 68 0 207 333 0 0 chr6 7959808 7959871 -181319683 + C-rich Low_complexity Low_complexity 1 63 0 433 268 28 56 chr6 7960019 7960198 -181319356 + MER5B DNA MER1_type 5 178 0 363 166 78 181 chr6 7960262 7960401 -181319153 + MER5B DNA MER1_type 6 121 -57 592 212 0 38 chr6 7960401 7960533 -181319021 - FLAM_A SINE Alu -6 127 1 363 166 78 181 chr6 7960533 7960586 -181318968 + MER5B DNA MER1_type 121 178 0 389 308 69 47 chr6 7961842 7962118 -181317436 + L2 LINE L2 3005 3286 -27 1996 128 0 29 chr6 7963428 7963734 -181315820 - AluSx SINE Alu -15 297 1 184 220 40 0 chr6 7964793 7964843 -181314711 - MIR3 SINE MIR -4 204 153 1504 161 28 46 chr6 7966101 7966425 -181313129 - L1MC1 LINE L1 0 6333 6016 2212 106 7 0 chr6 7967434 7967726 -181311828 + AluSx SINE Alu 1 294 -18 203 267 0 0 chr6 7968145 7968190 -181311364 + CT-rich Low_complexity Low_complexity 1 45 0 209 217 0 0 chr6 7968471 7968517 -181311037 + T-rich Low_complexity Low_complexity 1 46 0 395 281 131 11 chr6 7968887 7969147 -181310407 + LTR33A LTR ERVL 231 521 -2 227 303 0 0 chr6 7969268 7969344 -181310210 - L1ME1 LINE L1 -45 6121 6046 473 248 115 49 chr6 7970860 7971146 -181308408 - MER5C DNA MER1_type 0 324 20 187 206 330 10 chr6 7971139 7971236 -181308318 - MER5A DNA MER1_type -46 143 16 * 213 39 0 0 chr6 7971812 7971838 -181307716 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1735 149 14 11 chr6 7971844 7972125 -181307429 - AluJo SINE Alu -30 282 1 951 127 0 0 chr6 7972135 7972261 -181307293 - FLAM_C SINE Alu -17 126 1 298 193 35 153 chr6 7974531 7974733 -181304821 - L1MC4 LINE L1 -1 8041 7864 1946 115 39 0 chr6 7974735 7975014 -181304540 + AluSx SINE Alu 3 292 -20 627 216 58 0 chr6 7975087 7975226 -181304328 - L1ME2 LINE L1 -10 6154 6008 * 919 260 115 41 chr6 7975218 7975637 -181303917 - L1ME LINE L1 -5620 450 1 1675 175 15 4 chr6 7975825 7976099 -181303455 - AluJo SINE Alu -35 277 1 1102 129 13 0 chr6 7976350 7976505 -181303049 + AluSq SINE Alu 137 293 -20 196 374 32 11 chr6 7976744 7976934 -181302620 - L2 LINE L2 -464 2850 2657 1581 219 164 39 chr6 7977760 7978180 -181301374 + MLT1E2 LTR MaLR 51 548 -78 1998 143 3 0 chr6 7978180 7978474 -181301080 - AluJb SINE Alu -17 295 1 1581 219 164 39 chr6 7978474 7978565 -181300989 + MLT1E2 LTR MaLR 548 626 0 539 280 70 0 chr6 7978646 7978846 -181300708 + MIR SINE MIR 33 246 -16 193 331 192 0 chr6 7980311 7980441 -181299113 + MER5A DNA MER1_type 7 161 -28 * 378 306 8 8 chr6 7980356 7980480 -181299074 - MER5A DNA MER1_type -65 124 1 286 269 101 40 chr6 7982490 7982639 -181296915 - L3 LINE CR1 -114 1463 1306 765 230 133 5 chr6 7982639 7982835 -181296719 - MER58A DNA MER1_type 0 224 4 360 246 246 0 chr6 7983893 7984035 -181295519 + MER5A DNA MER1_type 13 189 0 5356 244 63 43 chr6 7984304 7984634 -181294920 - L1MEc LINE L1 -3180 3035 2713 1805 158 30 0 chr6 7984634 7984937 -181294617 - AluJo SINE Alu 0 312 1 5356 244 63 43 chr6 7984937 7985237 -181294317 - L1MEc LINE L1 -3502 2713 2421 2309 94 0 3 chr6 7985237 7985544 -181294010 - AluY SINE Alu -3 308 3 5356 244 63 43 chr6 7985544 7986718 -181292836 - L1MEc LINE L1 -3794 2421 1163 180 0 0 0 chr6 7986718 7986738 -181292816 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 5356 244 63 43 chr6 7986738 7987675 -181291879 - L1MEc LINE L1 -5052 1163 246 1926 184 115 12 chr6 7987723 7988142 -181291412 - MLT1C LTR MaLR 0 467 6 335 313 71 0 chr6 7989472 7989571 -181289983 + L2 LINE L2 3124 3229 -43 334 275 138 14 chr6 7989951 7990089 -181289465 + MIR3 SINE MIR 33 187 -21 2313 119 0 3 chr6 7990222 7990533 -181289021 - AluSx SINE Alu -2 310 1 929 193 31 0 chr6 7990593 7990754 -181288800 - FRAM SINE Alu 0 166 1 2188 106 0 3 chr6 7990982 7991296 -181288258 - AluSx SINE Alu 0 313 1 270 325 0 90 chr6 7992210 7992410 -181287144 + L2 LINE L2 3005 3186 -86 2133 107 0 73 chr6 7992423 7992750 -181286804 - AluSx SINE Alu -9 303 1 708 195 0 0 chr6 7995185 7995308 -181284246 - FLAM_A SINE Alu -10 123 1 1766 196 136 7 chr6 7996181 7996599 -181282955 - MLT1D LTR MaLR -7 498 27 1938 161 3 19 chr6 7996859 7997176 -181282378 + AluJo SINE Alu 1 312 0 206 32 32 0 chr6 7997474 7997505 -181282049 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 2254 76 42 0 chr6 7997513 7997801 -181281753 - AluY SINE Alu -10 301 2 224 250 77 29 chr6 7997950 7998054 -181281500 - MER5A DNA MER1_type 0 189 81 2910 174 66 62 chr6 7998219 7998974 -181280580 - L1MCa LINE L1 -5483 943 186 519 199 133 20 chr6 7999818 7999969 -181279585 + MER5B DNA MER1_type 1 168 -10 277 290 106 37 chr6 8001176 8001313 -181278241 + MER5A DNA MER1_type 7 160 -29 453 242 73 0 chr6 8001336 8001460 -181278094 + MER5B DNA MER1_type 1 133 -45 201 296 0 0 chr6 8001721 8001765 -181277789 + MIR SINE MIR 219 262 0 543 277 19 13 chr6 8001988 8002143 -181277411 - MIR SINE MIR -84 178 23 2439 87 6 3 chr6 8002299 8002610 -181276944 + AluSx SINE Alu 1 312 0 2147 117 0 7 chr6 8004796 8005095 -181274459 + AluSx SINE Alu 1 297 -15 895 155 61 0 chr6 8005095 8005243 -181274311 + AluSg/x SINE Alu 134 290 -22 2198 156 15 51 chr6 8005307 8005718 -181273836 - MSTD LTR MaLR 0 396 1 257 135 0 0 chr6 8006498 8006535 -181273019 + 5S rRNA rRNA 2 38 -83 719 221 0 0 chr6 8007197 8007324 -181272230 - FRAM SINE Alu -30 146 20 596 274 78 4 chr6 8008808 8009038 -181270516 - MIR SINE MIR -2 260 14 237 302 147 16 chr6 8009170 8009299 -181270255 - MIR3 SINE MIR -3 205 60 2311 83 0 29 chr6 8009855 8010168 -181269386 - AluSq SINE Alu -9 304 1 2336 88 0 3 chr6 8010794 8011089 -181268465 + AluSq SINE Alu 1 294 -19 1953 132 11 0 chr6 8011222 8011539 -181268015 - AluJb SINE Alu 0 320 1 452 267 0 46 chr6 8011718 8011849 -181267705 - MIR SINE MIR -75 187 63 827 294 127 52 chr6 8012522 8012959 -181266595 - L2 LINE L2 -662 2652 2249 1883 149 30 3 chr6 8012959 8013260 -181266294 + AluSx SINE Alu 3 311 -1 827 294 127 52 chr6 8013260 8013799 -181265755 - L2 LINE L2 -1065 2249 1603 225 200 40 0 chr6 8013816 8013866 -181265688 + MIR SINE MIR 156 207 -55 224 269 0 0 chr6 8014926 8014993 -181264561 + (TG)n Simple_repeat Simple_repeat 2 68 0 189 0 0 0 chr6 8016989 8017010 -181262544 + (T)n Simple_repeat Simple_repeat 1 21 0 276 264 176 39 chr6 8019109 8019291 -181260263 - Charlie2a DNA MER1_type -1199 1663 1457 616 175 71 0 chr6 8019504 8019630 -181259924 - L1MA9 LINE L1 0 6312 6178 459 245 0 0 chr6 8019631 8019729 -181259825 - L1MA9 LINE L1 -212 6100 6003 389 269 0 37 chr6 8019786 8019894 -181259660 - Charlie2a DNA MER1_type -2715 147 44 1908 157 10 10 chr6 8020761 8021073 -181258481 + AluJb SINE Alu 1 312 0 226 333 118 36 chr6 8021926 8022419 -181257135 + L2 LINE L2 2044 2576 -738 1704 177 75 42 chr6 8022489 8022516 -181257038 - MLT2C1 LTR ERVL 0 397 372 432 0 0 0 chr6 8022516 8022564 -181256990 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 1704 177 75 42 chr6 8022564 8022920 -181256634 - MLT2C1 LTR ERVL -25 372 1 3245 159 19 9 chr6 8023669 8024242 -181255312 + L1MC1 LINE L1 5755 6333 0 1465 150 38 23 chr6 8024885 8025151 -181254403 + AluJo SINE Alu 35 304 -8 298 224 109 68 chr6 8025223 8025370 -181254184 - MIR SINE MIR -87 175 23 625 342 98 15 chr6 8026085 8026626 -181252928 - L2 LINE L2 -555 2759 2174 182 195 0 24 chr6 8028253 8028294 -181251260 + L2 LINE L2 794 833 -2481 278 313 104 7 chr6 8028854 8028998 -181250556 - MIR3 SINE MIR -33 175 18 257 255 128 11 chr6 8030015 8030109 -181249445 + MIR3 SINE MIR 93 197 -11 387 0 0 0 chr6 8030609 8030652 -181248902 + (TG)n Simple_repeat Simple_repeat 1 43 0 264 306 171 27 chr6 8033427 8033902 -181245652 - L2 LINE L2 0 3313 2715 661 184 45 39 chr6 8034243 8034422 -181245132 + MER104 DNA MER2_type 1 180 0 202 132 0 26 chr6 8034910 8034948 -181244606 + (TTTC)n Simple_repeat Simple_repeat 3 39 0 302 315 99 0 chr6 8035159 8035270 -181244284 - L2 LINE L2 0 3272 3151 215 0 67 0 chr6 8037118 8037148 -181242406 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 286 312 18 9 chr6 8037463 8037572 -181241982 - L3b LINE CR1 -83 1500 1391 1077 154 5 56 chr6 8037746 8037804 -181241750 + MER5A DNA MER1_type 1 60 -129 1848 105 56 0 chr6 8037804 8038108 -181241446 - AluSq SINE Alu 0 319 1 1077 154 5 56 chr6 8038108 8038243 -181241311 + MER5A DNA MER1_type 60 185 -4 2621 59 0 0 chr6 8038443 8038749 -181240805 - AluY SINE Alu -5 306 1 1919 166 3 3 chr6 8039161 8039468 -181240086 + AluJo SINE Alu 1 307 -5 366 274 57 58 chr6 8040821 8040983 -181238571 - MIR3 SINE MIR -5 203 39 623 179 188 0 chr6 8043520 8043637 -181235917 + FLAM_C SINE Alu 2 140 -3 405 0 0 0 chr6 8043637 8043682 -181235872 + (TA)n Simple_repeat Simple_repeat 1 45 0 1840 148 3 67 chr6 8043872 8044203 -181235351 + AluJo SINE Alu 1 310 -2 1376 169 94 87 chr6 8044489 8044891 -181234663 - MLT1E2 LTR MaLR -211 415 11 1745 68 18 5 chr6 8045300 8045519 -181234035 + L1PA8 LINE L1 5940 6161 -11 503 255 221 5 chr6 8045838 8046042 -181233512 + MIR SINE MIR 2 249 -13 21 82 0 0 chr6 8046198 8046247 -181233307 + AT_rich Low_complexity Low_complexity 1 49 0 318 341 110 18 chr6 8046840 8047004 -181232550 - MIR SINE MIR -71 191 13 3205 40 3 5 chr6 8047898 8048270 -181231284 + L1PA5 LINE L1 5781 6151 -3 259 207 24 37 chr6 8048367 8048449 -181231105 - MIR3 SINE MIR -9 199 119 251 163 41 20 chr6 8049753 8049802 -181229752 - MER81 DNA DNA 0 114 65 229 333 0 13 chr6 8050031 8050106 -181229448 + GA-rich Low_complexity Low_complexity 2 75 0 2057 159 9 18 chr6 8051277 8051616 -181227938 - MER1B DNA MER1_type 0 337 2 704 116 132 25 chr6 8051937 8052058 -181227496 + AluJb SINE Alu 1 134 -178 416 342 27 40 chr6 8052119 8052341 -181227213 + MIR SINE MIR 42 260 -2 2279 96 3 0 chr6 8052560 8052852 -181226702 - AluSq SINE Alu -18 295 3 405 0 0 0 chr6 8053432 8053477 -181226077 + (TG)n Simple_repeat Simple_repeat 2 46 0 215 357 24 24 chr6 8053802 8053928 -181225626 - MIR SINE MIR -32 230 105 1072 266 67 49 chr6 8053981 8054744 -181224810 - L2 LINE L2 -85 3228 2451 1301 176 160 27 chr6 8055571 8055833 -181223721 + AluJo SINE Alu 2 298 -4 2307 102 3 6 chr6 8055977 8056290 -181223264 + AluSq SINE Alu 1 312 -1 403 271 41 16 chr6 8059161 8059283 -181220271 - L2 LINE L2 -6 3266 3142 234 227 0 0 chr6 8059806 8059850 -181219704 + CT-rich Low_complexity Low_complexity 2 45 0 1818 164 0 7 chr6 8059960 8060253 -181219301 + AluJo SINE Alu 1 291 -21 313 173 0 0 chr6 8060868 8060920 -181218634 - L2 LINE L2 -8 3305 3254 2476 124 37 8 chr6 8061108 8061462 -181218092 - THE1B LTR MaLR 0 364 1 2913 172 29 11 chr6 8061489 8062013 -181217541 + L1MB5 LINE L1 5640 6172 -2 320 296 136 16 chr6 8062467 8062592 -181216962 - L2 LINE L2 -7 3265 3126 2078 125 101 18 chr6 8062768 8063105 -181216449 + MLT1A1 LTR MaLR 1 365 0 838 225 73 0 chr6 8063692 8063883 -181215671 + MER3 DNA MER1_type 5 209 0 206 301 87 48 chr6 8063960 8064166 -181215388 - L2 LINE L2 -926 2388 2175 * 219 262 43 92 chr6 8064148 8064289 -181215265 + MIR SINE MIR 79 212 -50 717 154 22 66 chr6 8065081 8065217 -181214337 + FLAM_A SINE Alu 4 133 0 400 303 65 40 chr6 8065222 8065499 -181214055 + L1MEd LINE L1 948 1231 -4888 2064 50 88 0 chr6 8065644 8065927 -181213627 - AluY SINE Alu 0 306 1 1799 131 13 26 chr6 8066365 8066670 -181212884 - AluSx SINE Alu -11 301 1 21 0 0 0 chr6 8066732 8066753 -181212801 + AT_rich Low_complexity Low_complexity 1 21 0 1047 230 21 60 chr6 8066850 8067185 -181212369 + L1MD2 LINE L1 6028 6349 -10 481 288 157 37 chr6 8067889 8068013 -181211541 + L1M4 LINE L1 3223 3331 -2815 2254 105 19 0 chr6 8068013 8068328 -181211226 + L1PB1 LINE L1 5828 6148 -3 481 288 157 37 chr6 8068328 8068578 -181210976 + L1M4 LINE L1 3331 3642 -2504 1732 145 59 31 chr6 8068584 8068908 -181210646 + MER44D DNA MER2_type 1 603 -6 264 231 13 128 chr6 8069114 8069193 -181210361 - L1M4 LINE L1 -2045 4101 4047 2674 40 0 0 chr6 8069193 8069495 -181210059 + AluY SINE Alu 1 302 -9 264 231 13 128 chr6 8069495 8069571 -181209983 - L1M4 LINE L1 -2099 4047 3964 926 158 7 0 chr6 8069715 8069861 -181209693 - FRAM SINE Alu -30 146 1 3556 161 28 5 chr6 8069863 8070498 -181209056 - L1MB3 LINE L1 -44 6139 5490 213 200 60 0 chr6 8072595 8072645 -181206909 + CT-rich Low_complexity Low_complexity 4 56 0 611 225 86 91 chr6 8072647 8073177 -181206377 - MLT1F1 LTR MaLR 0 567 84 249 108 0 0 chr6 8073950 8073987 -181205567 + (T)n Simple_repeat Simple_repeat 1 37 0 848 113 60 65 chr6 8074413 8074581 -181204973 - L1MA9 LINE L1 0 6312 6146 1296 193 35 0 chr6 8074585 8074839 -181204715 - L1MA9 LINE L1 -322 5990 5728 203 265 92 20 chr6 8075304 8075402 -181204152 - MIR SINE MIR -65 197 93 1123 239 123 106 chr6 8078526 8079233 -181200321 + LTR8A LTR ERV1 2 720 -7 669 302 90 18 chr6 8080015 8080402 -181199152 - HsTC2 DNA Tc2 -1007 891 477 291 235 0 0 chr6 8080390 8080458 -181199096 - HsTC2 DNA Tc2 -1599 299 232 * 1303 93 0 0 chr6 8080659 8080842 -181198712 - AluY SINE Alu 0 311 129 317 198 37 0 chr6 8080863 8080944 -181198610 - L1MB4 LINE L1 -1 6179 6096 2823 238 89 26 chr6 8081379 8082485 -181197069 - L1M4 LINE L1 -1215 4931 3757 1633 172 3 17 chr6 8082820 8083111 -181196443 + AluJo SINE Alu 2 288 -24 23 54 0 0 chr6 8083111 8083148 -181196406 + AT_rich Low_complexity Low_complexity 1 37 0 225 268 0 93 chr6 8083580 8083677 -181195877 - L1MEc LINE L1 -6142 254 167 1867 135 24 0 chr6 8085044 8085340 -181194214 + AluSx SINE Alu 1 303 -9 1053 164 22 6 chr6 8085784 8085967 -181193587 + MER5A DNA MER1_type 4 189 0 767 167 56 167 chr6 8085971 8086091 -181193463 + MIR SINE MIR 20 95 -167 1572 142 127 0 chr6 8086091 8086359 -181193195 - AluJb SINE Alu 0 302 1 767 167 56 167 chr6 8086359 8086507 -181193047 + MIR SINE MIR 95 258 -4 252 0 0 0 chr6 8086652 8086680 -181192874 + (A)n Simple_repeat Simple_repeat 1 28 0 2671 29 0 0 chr6 8087136 8087447 -181192107 - AluYa5 SINE Alu 0 311 1 1758 161 0 7 chr6 8088638 8088936 -181190618 - AluJb SINE Alu -16 296 1 258 280 174 8 chr6 8089133 8089265 -181190289 + MIR SINE MIR 47 200 -62 217 378 49 6 chr6 8089442 8089606 -181189948 - MIR SINE MIR -69 193 23 360 291 94 49 chr6 8090601 8090804 -181188750 + MIR SINE MIR 1 212 -50 415 95 0 0 chr6 8091594 8091657 -181187897 + Alu SINE Alu 240 302 -10 1028 276 97 23 chr6 8093448 8093542 -181186012 - MLT1K LTR MaLR 0 588 502 2298 94 0 0 chr6 8093542 8093851 -181185703 - AluY SINE Alu -2 309 1 1028 276 97 23 chr6 8093851 8094198 -181185356 - MLT1K LTR MaLR -86 502 114 1868 131 28 3 chr6 8094290 8094580 -181184974 + AluSx SINE Alu 1 297 -15 374 259 238 21 chr6 8094779 8094972 -181184582 + MIR SINE MIR 10 244 -18 2057 121 7 3 chr6 8097418 8097724 -181181830 - AluSq SINE Alu -6 307 1 203 81 54 0 chr6 8099418 8099455 -181180099 + CT-rich Low_complexity Low_complexity 5 43 0 1985 104 7 4 chr6 8101201 8101481 -181178073 - AluSx SINE Alu -31 281 1 214 300 38 12 chr6 8102414 8102494 -181177060 - MER5A DNA MER1_type -65 124 43 1685 252 80 74 chr6 8103306 8103353 -181176201 - MER21B LTR ERV1 -106 757 712 1655 193 23 0 chr6 8103353 8103658 -181175896 - AluJo SINE Alu 0 312 1 1685 252 80 74 chr6 8103658 8104351 -181175203 - MER21B LTR ERV1 -151 712 13 700 210 40 65 chr6 8104613 8104861 -181174693 - MLT1J2 LTR MaLR -189 261 20 376 337 30 45 chr6 8104863 8105026 -181174528 + L2 LINE L2 2879 3040 -273 1643 140 29 32 chr6 8105026 8105334 -181174220 + AluJo SINE Alu 1 307 -5 376 337 30 45 chr6 8105334 8105372 -181174182 + L2 LINE L2 3040 3077 -236 2724 196 12 55 chr6 8105432 8105946 -181173608 - MLT2B3 LTR ERVL -2 552 64 1524 181 36 0 chr6 8105946 8106227 -181173327 + AluJo SINE Alu 2 292 -20 2724 196 12 55 chr6 8106227 8106289 -181173265 - MLT2B3 LTR ERVL -490 64 1 570 268 75 36 chr6 8106803 8107174 -181172380 - L1MEd LINE L1 -4869 1250 967 376 317 81 43 chr6 8107194 8107380 -181172174 - L1MEd LINE L1 -5078 1041 849 220 0 0 79 chr6 8107448 8107486 -181172068 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2153 111 0 3 chr6 8107893 8108190 -181171364 + AluSx SINE Alu 5 300 -12 187 319 42 59 chr6 8108391 8108510 -181171044 + L2 LINE L2 2636 2752 -562 210 246 148 0 chr6 8109512 8109573 -181169981 + L2 LINE L2 3244 3313 0 404 304 56 0 chr6 8110330 8110455 -181169099 + MIR SINE MIR 20 151 -111 274 313 36 27 chr6 8114099 8114211 -181165343 - MER5A DNA MER1_type -71 118 6 292 284 60 66 chr6 8115861 8115998 -181163556 - MIR SINE MIR -61 147 15 282 298 128 21 chr6 8118567 8118708 -181160846 + L2 LINE L2 3158 3313 0 259 352 193 0 chr6 8121284 8121429 -181158125 - MIR SINE MIR -13 249 77 1504 257 82 23 chr6 8122436 8123008 -181156546 + L1MC5 LINE L1 6927 7532 -429 2107 118 53 28 chr6 8123067 8123422 -181156132 + THE1B LTR MaLR 1 364 0 297 250 133 39 chr6 8123494 8123622 -181155932 + L1ME3A LINE L1 6031 6170 0 1262 184 93 25 chr6 8124670 8124948 -181154606 - AluJb SINE Alu -11 301 5 1186 163 62 15 chr6 8125025 8125377 -181154177 - Tigger1 DNA MER2_type 0 2418 1 614 184 0 0 chr6 8126192 8126290 -181153264 + AluJ/FLAM SINE Alu 2 99 -213 1468 153 15 23 chr6 8126291 8126552 -181153002 + AluJo SINE Alu 30 288 -24 386 298 50 73 chr6 8127405 8127707 -181151847 + L1ME LINE L1 5511 5805 -316 1937 123 24 0 chr6 8128617 8128909 -181150645 - AluSq SINE Alu -14 299 1 312 70 0 0 chr6 8130072 8130115 -181149439 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 1804 176 49 9 chr6 8131162 8131508 -181148046 - MLT1A1 LTR MaLR 0 365 6 1926 175 62 27 chr6 8132399 8132850 -181146704 + MLT1C LTR MaLR 1 467 0 274 289 103 57 chr6 8135528 8135791 -181143763 + L2 LINE L2 2809 3083 -189 1705 152 18 7 chr6 8136515 8136798 -181142756 + AluJo SINE Alu 9 294 -18 2133 104 3 10 chr6 8136805 8137114 -181142440 + AluSg SINE Alu 1 307 -3 2311 83 0 0 chr6 8138556 8138856 -181140698 + AluSc SINE Alu 2 301 -8 1431 185 3 52 chr6 8139094 8139418 -181140136 + AluJo SINE Alu 5 312 0 29 60 0 0 chr6 8140790 8140840 -181138714 + GC_rich Low_complexity Low_complexity 1 50 0 22 35 0 0 chr6 8140973 8141002 -181138552 + GC_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr6 8141188 8141208 -181138346 + (CCG)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr6 8141212 8141243 -181138311 + GC_rich Low_complexity Low_complexity 1 31 0 200 248 0 70 chr6 8141344 8141473 -181138081 + C-rich Low_complexity Low_complexity 3 122 0 189 367 20 10 chr6 8142396 8142494 -181137060 + L2 LINE L2 2418 2516 -798 974 312 204 32 chr6 8142749 8143914 -181135640 + L2 LINE L2 107 1472 -1842 1984 189 60 35 chr6 8143982 8144464 -181135090 + MLT1D LTR MaLR 10 503 -2 272 254 45 55 chr6 8144466 8144576 -181134978 + L2 LINE L2 1567 1675 -1639 842 286 205 9 chr6 8144582 8145148 -181134406 + L2 LINE L2 1782 2458 -856 547 155 0 0 chr6 8145158 8145242 -181134312 - AluS SINE Alu -227 85 2 441 297 141 47 chr6 8145285 8146051 -181133503 + L2 LINE L2 2462 3312 -1 233 219 0 109 chr6 8146521 8146558 -181132996 + L2 LINE L2 3216 3245 -27 2272 138 36 17 chr6 8146558 8146914 -181132640 + THE1B LTR MaLR 1 363 -1 233 219 0 109 chr6 8146914 8146940 -181132614 + L2 LINE L2 3245 3272 0 2150 107 0 0 chr6 8147108 8147398 -181132156 - AluSg SINE Alu -20 290 1 251 268 89 71 chr6 8148649 8148761 -181130793 + MER5B DNA MER1_type 5 118 -60 225 287 76 80 chr6 8148945 8149182 -181130372 - LTR67 LTR ERVL -138 419 184 1972 149 3 0 chr6 8149316 8149618 -181129936 - AluSq SINE Alu -10 303 1 245 276 71 0 chr6 8149699 8149797 -181129757 + MER103 DNA DNA 59 163 -3 843 274 126 26 chr6 8149971 8150321 -181129233 - L2 LINE L2 -4 3309 2925 3813 263 72 77 chr6 8150346 8152133 -181127421 - L2 LINE L2 -527 2787 1011 281 357 80 23 chr6 8152247 8152676 -181126878 + L2 LINE L2 2533 2983 -289 238 200 0 29 chr6 8152736 8152806 -181126748 - LTR66 LTR ERVL -142 468 401 486 120 0 0 chr6 8152825 8152900 -181126654 + (CA)n Simple_repeat Simple_repeat 2 76 0 1527 141 24 0 chr6 8152900 8153149 -181126405 - Tigger2 DNA MER2_type -3 2715 2461 3917 127 29 8 chr6 8153206 8153822 -181125732 - Tigger2 DNA MER2_type -1964 754 126 328 205 152 41 chr6 8153937 8154126 -181125428 + L1P4 LINE L1 5575 5796 -370 329 311 49 25 chr6 8154150 8154272 -181125282 + MIR SINE MIR 12 136 -126 4106 244 71 61 chr6 8154332 8156031 -181123523 + L1MCc LINE L1 20 1745 -5069 351 0 0 0 chr6 8156031 8156070 -181123484 + (CA)n Simple_repeat Simple_repeat 2 40 0 4106 244 71 61 chr6 8156070 8156255 -181123299 + L1MCc LINE L1 1745 1927 -4887 39269 77 11 9 chr6 8156261 8162388 -181117166 + L1PA6 LINE L1 12 6152 -2 31 26 0 0 chr6 8162741 8162779 -181116775 + AT_rich Low_complexity Low_complexity 1 38 0 2277 192 8 3 chr6 8163036 8163417 -181116137 - MER70A LTR ERVL 0 472 90 912 217 12 0 chr6 8163412 8163573 -181115981 - MER70B LTR ERVL -415 163 1 * 641 205 155 0 chr6 8163722 8163883 -181115671 - MER5A DNA MER1_type 0 189 4 622 329 79 56 chr6 8163924 8164428 -181115126 - HAL1b LINE L1 -756 592 77 2260 145 17 3 chr6 8165374 8165733 -181113821 - MLT1A1 LTR MaLR 0 365 2 2060 125 0 7 chr6 8166043 8166346 -181113208 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr6 8166911 8166933 -181112621 + AT_rich Low_complexity Low_complexity 1 22 0 1988 136 13 0 chr6 8167033 8167342 -181112212 - AluSq SINE Alu 0 313 1 1975 105 34 3 chr6 8168243 8168539 -181111015 - AluSx SINE Alu -7 305 1 1286 156 93 14 chr6 8168648 8168954 -181110600 + MLT1B LTR MaLR 1 386 -4 432 106 0 0 chr6 8169104 8169170 -181110384 - Alu SINE Alu -10 301 236 985 93 6 28 chr6 8171053 8171235 -181108319 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 184 270 0 0 chr6 8171906 8171943 -181107611 + L2 LINE L2 3180 3216 -97 2872 127 7 25 chr6 8171984 8172417 -181107137 - MSTC LTR MaLR -3 425 1 376 226 75 50 chr6 8172672 8172831 -181106723 - MER46C DNA MER2_type -174 164 2 260 303 56 56 chr6 8173183 8173325 -181106229 - MIR SINE MIR -93 169 28 2029 113 19 32 chr6 8173434 8173745 -181105809 + THE1B LTR MaLR 1 307 -57 38205 44 5 0 chr6 8173745 8179849 -181099705 - L1PA4 LINE L1 -9 6146 11 480 129 14 0 chr6 8179854 8179924 -181099630 + THE1B LTR MaLR 294 364 0 24 32 0 0 chr6 8180862 8180893 -181098661 + AT_rich Low_complexity Low_complexity 1 31 0 2130 96 7 0 chr6 8180949 8181265 -181098289 - AluSx SINE Alu 0 318 1 22 0 0 0 chr6 8181375 8181397 -181098157 + AT_rich Low_complexity Low_complexity 1 22 0 839 128 0 8 chr6 8182514 8182639 -181096915 - FLAM_C SINE Alu -19 124 1 260 331 105 0 chr6 8182802 8182926 -181096628 - L2 LINE L2 -2823 491 355 1675 165 35 3 chr6 8183267 8183552 -181096002 - AluJo SINE Alu -18 294 1 27 0 0 0 chr6 8183849 8183876 -181095678 + AT_rich Low_complexity Low_complexity 1 27 0 1706 159 37 0 chr6 8184919 8185190 -181094364 + AluJo SINE Alu 1 281 -31 189 107 0 0 chr6 8185191 8185219 -181094335 + (CAAT)n Simple_repeat Simple_repeat 2 29 0 806 214 6 12 chr6 8185424 8185592 -181093962 - FRAM SINE Alu -6 170 4 2267 92 0 7 chr6 8186383 8186686 -181092868 + AluSx SINE Alu 1 301 -11 308 250 205 19 chr6 8186756 8186912 -181092642 + L1ME4a LINE L1 5699 5883 -238 460 206 89 7 chr6 8187008 8187154 -181092400 + L1ME4a LINE L1 5940 6097 -24 936 82 8 0 chr6 8187247 8187369 -181092185 + AluSq/x SINE Alu 2 124 -189 181 302 93 93 chr6 8188879 8189008 -181090546 + MIR SINE MIR 16 144 -64 2082 115 37 0 chr6 8189320 8189616 -181089938 - AluSx SINE Alu -5 307 1 31 44 0 0 chr6 8189662 8189707 -181089847 + AT_rich Low_complexity Low_complexity 1 45 0 283 295 0 0 chr6 8189991 8190052 -181089502 + (CA)n Simple_repeat Simple_repeat 1 61 0 1772 99 0 0 chr6 8190255 8190478 -181089076 - AluSg/x SINE Alu -15 297 75 2898 6 0 0 chr6 8190976 8191287 -181088267 + AluYa5 SINE Alu 1 311 0 1014 153 74 60 chr6 8191502 8191718 -181087836 - MER20 DNA MER1_type 0 219 1 3339 164 7 17 chr6 8192096 8192225 -181087329 - L1MB3 LINE L1 0 6183 6054 2302 101 0 22 chr6 8192225 8192543 -181087011 - AluSq SINE Alu -2 311 1 3339 164 7 17 chr6 8192543 8192998 -181086556 - L1MB3 LINE L1 -129 6054 5605 22 0 0 0 chr6 8193723 8193745 -181085809 + AT_rich Low_complexity Low_complexity 1 22 0 2317 100 0 3 chr6 8194290 8194590 -181084964 + AluSq SINE Alu 1 299 -14 365 289 147 26 chr6 8195101 8195333 -181084221 - MIR SINE MIR -1 261 2 239 357 56 16 chr6 8196014 8196140 -181083414 + MIR SINE MIR 20 150 -112 201 39 0 0 chr6 8196452 8196478 -181083076 + (TG)n Simple_repeat Simple_repeat 2 27 0 764 96 0 0 chr6 8196478 8196572 -181082982 - AluSg/x SINE Alu -26 284 191 1947 122 16 48 chr6 8196960 8197271 -181082283 - AluSx SINE Alu -7 305 5 2177 125 0 0 chr6 8197521 8197816 -181081738 - AluSx SINE Alu -17 295 1 2228 119 0 0 chr6 8199286 8199581 -181079973 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr6 8200555 8200599 -181078955 + AT_rich Low_complexity Low_complexity 1 44 0 2243 132 0 0 chr6 8200616 8200927 -181078627 - AluSx SINE Alu -1 311 1 404 278 161 42 chr6 8201069 8201692 -181077862 - L1MEd LINE L1 -3219 2910 2186 2407 75 0 3 chr6 8201692 8201986 -181077568 + AluSc SINE Alu 1 293 -16 404 278 161 42 chr6 8201986 8202093 -181077461 - L1MEd LINE L1 -3943 2186 2093 1194 256 95 53 chr6 8202482 8203312 -181076242 - L1MEd LINE L1 -4752 1558 660 186 204 68 0 chr6 8203631 8203675 -181075879 + L2 LINE L2 361 407 -2907 922 241 129 38 chr6 8203700 8204041 -181075513 + MLT1A2 LTR MaLR 1 372 -2 207 0 0 0 chr6 8204908 8204931 -181074623 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1638 99 0 0 chr6 8205212 8205424 -181074130 - AluSq SINE Alu -6 307 96 767 144 23 38 chr6 8205438 8205570 -181073984 - AluSq/x SINE Alu -181 131 2 710 117 27 0 chr6 8206273 8206384 -181073170 + L1MA7 LINE L1 6173 6286 -5 963 125 0 29 chr6 8206389 8206525 -181073029 + FLAM_C SINE Alu 2 133 0 24 32 0 0 chr6 8207335 8207366 -181072188 + AT_rich Low_complexity Low_complexity 1 31 0 2081 119 16 19 chr6 8207858 8208169 -181071385 + AluSx SINE Alu 1 310 -2 1324 95 105 0 chr6 8209571 8209761 -181069793 + L1PB1 LINE L1 5938 6147 -4 195 42 0 0 chr6 8211030 8211054 -181068500 + (TG)n Simple_repeat Simple_repeat 2 25 0 241 293 0 0 chr6 8211225 8211283 -181068271 + CT-rich Low_complexity Low_complexity 5 62 0 1342 265 164 20 chr6 8211957 8212554 -181067000 + L2 LINE L2 1662 2344 -970 530 134 34 92 chr6 8212543 8212662 -181066892 + MIR SINE MIR 106 217 -45 * 2410 84 0 3 chr6 8213850 8214148 -181065406 + AluSc SINE Alu 1 297 -12 607 162 45 18 chr6 8214858 8214969 -181064585 + FLAM_A SINE Alu 24 137 -5 352 272 130 19 chr6 8216325 8216487 -181063067 - MIR SINE MIR -10 252 73 474 314 100 18 chr6 8216501 8216721 -181062833 + MIR SINE MIR 15 252 -10 509 301 159 40 chr6 8217924 8217956 -181061598 + MIR SINE MIR 3 30 -232 2134 137 0 0 chr6 8217956 8218262 -181061292 + AluSx SINE Alu 1 306 -6 509 301 159 40 chr6 8218262 8218455 -181061099 + MIR SINE MIR 30 255 -7 1943 153 13 7 chr6 8219189 8219497 -181060057 - AluJo SINE Alu -2 310 1 662 281 93 39 chr6 8219924 8220360 -181059194 + L1MC4a LINE L1 5481 5937 -227 2367 79 10 0 chr6 8220484 8220776 -181058778 - AluY SINE Alu -16 295 1 30 59 0 0 chr6 8222310 8222361 -181057193 + AT_rich Low_complexity Low_complexity 1 51 0 940 194 0 0 chr6 8222434 8222594 -181056960 + MER3 DNA MER1_type 1 160 -49 2290 106 3 3 chr6 8222765 8223076 -181056478 + AluSq SINE Alu 1 311 -2 2407 77 3 6 chr6 8227771 8228084 -181051470 - AluSp SINE Alu -1 312 1 380 298 17 15 chr6 8228320 8228461 -181051093 + MIR3 SINE MIR 56 196 -12 1893 267 117 66 chr6 8229358 8229614 -181049940 + L1ME3A LINE L1 807 1048 -5081 2272 117 3 0 chr6 8229614 8229921 -181049633 + AluSx SINE Alu 1 308 -4 1893 267 117 66 chr6 8229921 8230686 -181048868 + L1ME3A LINE L1 1048 1772 -4357 2159 112 7 0 chr6 8230686 8230981 -181048573 - AluSx SINE Alu -15 297 1 1893 267 117 66 chr6 8230981 8231232 -181048322 + L1ME3A LINE L1 1772 2009 -4120 2305 103 3 6 chr6 8231232 8231543 -181048011 - AluSp SINE Alu -3 310 1 1893 267 117 66 chr6 8231543 8232849 -181046705 + L1ME3A LINE L1 2009 3565 -2564 1681 268 66 29 chr6 8232857 8233416 -181046138 - MLT1E LTR MaLR -13 580 1 530 233 74 81 chr6 8233418 8233689 -181045865 + L1ME3A LINE L1 3562 3830 -2299 * 1982 250 48 67 chr6 8233688 8234529 -181045025 + L1ME3A LINE L1 5276 6100 -53 199 414 69 0 chr6 8234560 8234676 -181044878 - L2 LINE L2 -28 3244 3121 2775 148 16 20 chr6 8234806 8235253 -181044301 + MER65A LTR ERV1 1 445 0 2884 102 53 12 chr6 8235287 8235698 -181043856 - MSTA LTR MaLR 0 428 1 2208 129 0 0 chr6 8236207 8236517 -181043037 + AluSx SINE Alu 1 310 -2 1836 177 32 0 chr6 8236521 8236832 -181042722 + MLT1A1 LTR MaLR 45 365 0 307 294 92 9 chr6 8237441 8237550 -181042004 + MER94 DNA DNA 16 133 -1 2791 157 42 13 chr6 8239225 8239697 -181039857 + MER66B LTR ERV1 1 486 0 1462 203 65 15 chr6 8240176 8240247 -181039307 - MER2 DNA MER2_type -2 342 276 2277 111 0 13 chr6 8240247 8240554 -181039000 + AluSg SINE Alu 1 303 -7 1462 203 65 15 chr6 8240554 8240807 -181038747 - MER2 DNA MER2_type -68 276 2 21 57 0 0 chr6 8241839 8241874 -181037680 + AT_rich Low_complexity Low_complexity 1 35 0 2485 156 2 44 chr6 8242195 8242624 -181036930 + MER47B DNA MER2_type 8 418 0 1256 156 5 18 chr6 8243086 8243304 -181036250 - MSTB LTR MaLR 0 426 212 * 1601 258 48 50 chr6 8243292 8243808 -181035746 - MER21B LTR ERV1 -348 515 1 199 79 53 0 chr6 8244483 8244521 -181035033 + T-rich Low_complexity Low_complexity 3 42 0 577 282 95 26 chr6 8244603 8244876 -181034678 - L2 LINE L2 -1 3312 3021 195 129 0 0 chr6 8245190 8245221 -181034333 + (TCTCCC)n Simple_repeat Simple_repeat 5 35 0 342 262 47 19 chr6 8246280 8246387 -181033167 - L3 LINE CR1 -125 1452 1343 181 273 78 26 chr6 8246508 8246585 -181032969 - L3 LINE CR1 -410 1167 1087 2157 107 0 0 chr6 8246993 8247273 -181032281 - AluSx SINE Alu -32 280 1 309 309 190 4 chr6 8247275 8247453 -181032101 - MIR SINE MIR -37 225 9 1838 156 102 15 chr6 8247479 8247813 -181031741 - MLT1A1 LTR MaLR -2 363 1 631 203 55 1 chr6 8248109 8248252 -181031302 - L1ME2 LINE L1 -2 6332 6022 2056 213 20 20 chr6 8248254 8248710 -181030844 - L1ME2 LINE L1 -244 5922 5467 21 0 0 0 chr6 8248781 8248802 -181030752 + AT_rich Low_complexity Low_complexity 1 21 0 2266 84 0 3 chr6 8248804 8249112 -181030442 + AluY SINE Alu 1 307 0 2202 143 37 69 chr6 8249834 8250108 -181029446 - L1MA9 LINE L1 0 6312 6058 1882 116 60 28 chr6 8250108 8250392 -181029162 - AluSx SINE Alu -19 293 1 2202 143 37 69 chr6 8250392 8250580 -181028974 - L1MA9 LINE L1 -254 6058 5865 544 209 59 44 chr6 8250580 8250834 -181028720 - L1ME2 LINE L1 -733 5445 5189 1028 150 12 0 chr6 8250870 8251037 -181028517 + AluJb SINE Alu 128 296 -16 650 199 23 0 chr6 8251076 8251207 -181028347 - L1MA10 LINE L1 -10 6324 6191 512 157 41 75 chr6 8251214 8251361 -181028193 - L1ME2 LINE L1 -960 5186 5045 22 70 0 0 chr6 8251521 8251564 -181027990 + AT_rich Low_complexity Low_complexity 1 43 0 361 292 94 94 chr6 8251624 8251652 -181027902 + L2 LINE L2 3077 3104 -209 3139 144 49 103 chr6 8251652 8251726 -181027828 + MER73 LTR ERVL 1 77 -567 2291 50 0 0 chr6 8251726 8252003 -181027551 + AluY SINE Alu 1 277 -34 333 0 0 0 chr6 8252004 8252041 -181027513 + (CA)n Simple_repeat Simple_repeat 1 37 0 3139 144 49 103 chr6 8252041 8252396 -181027158 + MER73 LTR ERVL 77 384 -260 2032 125 0 39 chr6 8252396 8252708 -181026846 + AluSx SINE Alu 1 300 -12 3139 144 49 103 chr6 8252708 8252953 -181026601 + MER73 LTR ERVL 384 641 -3 361 292 94 94 chr6 8252953 8253157 -181026397 + L2 LINE L2 3103 3309 -4 1906 129 48 14 chr6 8253750 8254044 -181025510 - AluSg SINE Alu -6 304 1 2416 92 0 13 chr6 8254722 8255038 -181024516 + AluSx SINE Alu 1 312 0 2670 172 42 12 chr6 8255385 8255422 -181024132 - L1MA9 LINE L1 -5 6307 6273 2418 100 0 0 chr6 8255422 8255732 -181023822 + AluSg SINE Alu 1 310 0 2670 172 42 12 chr6 8255732 8256194 -181023360 - L1MA9 LINE L1 -39 6273 5793 265 291 20 20 chr6 8256643 8256794 -181022760 + (TA)n Simple_repeat Simple_repeat 1 151 0 324 0 0 0 chr6 8256805 8256841 -181022713 + (CA)n Simple_repeat Simple_repeat 2 37 0 2098 108 7 14 chr6 8256868 8257165 -181022389 - AluSx SINE Alu -16 296 2 467 199 89 7 chr6 8257258 8257404 -181022150 - L1ME4a LINE L1 -24 6097 5940 310 250 205 19 chr6 8257500 8257656 -181021898 - L1ME4a LINE L1 -238 5883 5699 2259 93 0 7 chr6 8257726 8258028 -181021526 - AluSx SINE Alu -12 300 1 806 214 6 12 chr6 8258819 8258987 -181020567 + FRAM SINE Alu 4 170 -6 189 107 0 0 chr6 8259192 8259220 -181020334 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 1706 159 37 0 chr6 8259221 8259492 -181020062 - AluJo SINE Alu -31 281 1 27 0 0 0 chr6 8260534 8260561 -181018993 + AT_rich Low_complexity Low_complexity 1 27 0 1675 165 35 3 chr6 8260858 8261143 -181018411 + AluJo SINE Alu 1 294 -18 260 331 105 0 chr6 8261484 8261608 -181017946 + L2 LINE L2 355 491 -2823 839 128 0 8 chr6 8261771 8261896 -181017658 + FLAM_C SINE Alu 1 124 -19 2131 96 7 0 chr6 8263145 8263461 -181016093 + AluSx SINE Alu 1 318 0 23 33 0 0 chr6 8263517 8263547 -181016007 + AT_rich Low_complexity Low_complexity 1 30 0 480 129 14 0 chr6 8264485 8264555 -181014999 - THE1B LTR MaLR 0 364 294 43915 46 6 1 chr6 8264560 8270664 -181008890 + L1PA4 LINE L1 11 6144 -11 2012 115 19 32 chr6 8270664 8270978 -181008576 - THE1B LTR MaLR -54 310 1 236 310 56 56 chr6 8271087 8271229 -181008325 + MIR SINE MIR 28 169 -93 404 226 75 50 chr6 8271581 8271740 -181007814 + MER46C DNA MER2_type 2 164 -174 3018 127 7 25 chr6 8271995 8272428 -181007126 + MSTC LTR MaLR 1 425 -3 182 270 0 0 chr6 8272469 8272506 -181007048 - L2 LINE L2 -97 3216 3180 883 117 6 28 chr6 8273176 8273356 -181006198 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 448 106 0 0 chr6 8275234 8275300 -181004254 + Alu SINE Alu 237 302 -10 1261 149 91 15 chr6 8275450 8275756 -181003798 - MLT1B LTR MaLR -4 386 1 2074 98 34 10 chr6 8275865 8276160 -181003394 + AluSx SINE Alu 1 302 -10 2091 136 13 0 chr6 8277065 8277374 -181002180 + AluSq SINE Alu 1 313 0 22 0 0 0 chr6 8277485 8277507 -181002047 + AT_rich Low_complexity Low_complexity 1 22 0 2185 122 0 7 chr6 8278071 8278374 -181001180 - AluSx SINE Alu -11 301 1 2378 145 17 3 chr6 8278684 8279043 -181000511 + MLT1A1 LTR MaLR 2 365 0 492 343 72 38 chr6 8280046 8280492 -180999062 + HAL1b LINE L1 132 592 -756 639 192 160 0 chr6 8280538 8280694 -180998860 + MER5A DNA MER1_type 9 189 0 902 217 12 0 chr6 8280843 8281004 -180998550 + MER70A LTR ERVL 1 163 -309 * 2233 192 8 3 chr6 8280999 8281380 -180998174 + MER70A LTR ERVL 90 472 0 31 26 0 0 chr6 8281637 8281675 -180997879 + AT_rich Low_complexity Low_complexity 1 38 0 39072 77 13 11 chr6 8282029 8288155 -180991399 - L1PA6 LINE L1 -2 6152 12 4021 245 70 61 chr6 8288161 8288346 -180991208 - L1MCc LINE L1 -4887 1536 1354 243 0 0 0 chr6 8288346 8288373 -180991181 + (TG)n Simple_repeat Simple_repeat 2 28 0 4021 245 70 61 chr6 8288373 8290074 -180989480 - L1MCc LINE L1 -5069 1354 20 316 311 49 25 chr6 8290133 8290255 -180989299 - MIR SINE MIR -126 136 12 339 205 152 41 chr6 8290279 8290468 -180989086 - L1P4 LINE L1 -370 5796 5575 3968 127 29 8 chr6 8290583 8291199 -180988355 + Tigger2 DNA MER2_type 126 754 -1964 1549 141 24 0 chr6 8291256 8291505 -180988049 + Tigger2 DNA MER2_type 2461 2715 -3 345 233 0 0 chr6 8291509 8291599 -180987955 + (TA)n Simple_repeat Simple_repeat 1 90 0 250 176 0 54 chr6 8291599 8291673 -180987881 + LTR66 LTR ERVL 399 468 -142 301 285 15 36 chr6 8291721 8291858 -180987696 - L2 LINE L2 -280 2992 2859 464 277 118 40 chr6 8292473 8292714 -180986840 - MIR SINE MIR 0 262 3 310 185 0 0 chr6 8292917 8292971 -180986583 - L2 LINE L2 -2 3270 3217 199 261 54 63 chr6 8292984 8293095 -180986459 + MIR SINE MIR 107 216 -46 2221 90 38 0 chr6 8293161 8293449 -180986105 + AluSx SINE Alu 1 299 -13 191 255 0 59 chr6 8293754 8293805 -180985749 + L2 LINE L2 3144 3191 -81 28 29 0 0 chr6 8293952 8293987 -180985567 + AT_rich Low_complexity Low_complexity 1 35 0 6491 166 28 9 chr6 8294760 8295774 -180983780 + L1PB1 LINE L1 4 1044 -4284 2262 109 0 0 chr6 8295774 8296067 -180983487 - AluSg SINE Alu -17 293 1 6491 166 28 9 chr6 8296067 8296197 -180983357 + L1PB1 LINE L1 1044 1170 -4158 1988 122 24 0 chr6 8296199 8296487 -180983067 + AluSq SINE Alu 1 295 -18 6899 185 19 2 chr6 8296488 8298069 -180981485 + L1PB1 LINE L1 4071 5674 -659 11949 55 5 0 chr6 8298069 8300247 -180979307 + L1PA6 LINE L1 3973 6154 0 4729 75 33 75 chr6 8300247 8300934 -180978620 + L1PB1 LINE L1 5652 6326 -7 383 113 126 24 chr6 8300967 8301050 -180978504 + L1MEc LINE L1 3595 3675 -3890 405 183 0 37 chr6 8301055 8301137 -180978417 - L1 LINE L1 -3438 2708 2630 12949 168 87 21 chr6 8301148 8304089 -180975465 + L1MA4 LINE L1 3705 6452 -1267 207 0 0 0 chr6 8304089 8304112 -180975442 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 2269 79 0 0 chr6 8304114 8304393 -180975161 - AluY SINE Alu -32 279 1 12949 168 87 21 chr6 8304393 8305201 -180974353 + L1MA4 LINE L1 6452 7719 0 475 267 7 15 chr6 8305303 8305438 -180974116 - L2 LINE L2 0 3313 3180 * 595 299 38 38 chr6 8305425 8305686 -180973868 - L2 LINE L2 -1035 2279 2019 314 369 40 25 chr6 8305745 8305943 -180973611 + MIR SINE MIR 22 222 -40 2080 119 7 3 chr6 8306187 8306481 -180973073 + AluSc SINE Alu 1 295 -14 2344 102 0 0 chr6 8306916 8307221 -180972333 - AluY SINE Alu -6 305 1 2155 81 0 0 chr6 8307248 8307555 -180971999 - AluY SINE Alu 0 307 1 2685 204 14 40 chr6 8307963 8308133 -180971421 + MER68 LTR ERV1 1 174 -388 1702 109 4 0 chr6 8308133 8308362 -180971192 - MER30 DNA MER1_type 0 230 1 2685 204 14 40 chr6 8308362 8308768 -180970786 + MER68 LTR ERV1 174 562 0 232 229 0 0 chr6 8308813 8308861 -180970693 + MLT1F1 LTR MaLR 78 125 -442 2499 197 55 35 chr6 8308887 8309382 -180970172 + L1MD3 LINE L1 7406 7889 -106 2819 52 25 44 chr6 8309382 8309611 -180969943 + THE1A LTR MaLR 1 222 -133 2396 95 0 7 chr6 8309611 8309917 -180969637 + AluSg SINE Alu 1 304 -6 2819 52 25 44 chr6 8309917 8310049 -180969505 + THE1A LTR MaLR 222 355 0 12641 92 2 1 chr6 8310049 8311627 -180967927 + THE1A-int LTR MaLR 1 1580 0 2844 79 6 6 chr6 8311629 8311982 -180967572 + THE1A LTR MaLR 3 355 0 2499 197 55 35 chr6 8311982 8312060 -180967494 + L1MD3 LINE L1 7889 7995 0 621 203 68 34 chr6 8312193 8312370 -180967184 - L1MC5 LINE L1 -61 7900 7718 1689 151 3 63 chr6 8312370 8312687 -180966867 - AluJo SINE Alu -8 304 7 360 0 0 0 chr6 8312770 8312810 -180966744 + (CA)n Simple_repeat Simple_repeat 1 40 0 1291 157 0 0 chr6 8312821 8313012 -180966542 - AluJb SINE Alu -16 296 106 1314 230 54 16 chr6 8313054 8313441 -180966113 - L1MC5 LINE L1 -305 7656 7255 897 185 11 85 chr6 8313453 8313713 -180965841 - L1MC5 LINE L1 -808 7153 6913 924 267 89 36 chr6 8313754 8314147 -180965407 - L1MC4a LINE L1 -893 6915 6502 24 32 0 0 chr6 8314235 8314266 -180965288 + AT_rich Low_complexity Low_complexity 1 31 0 2236 110 13 3 chr6 8314340 8314648 -180964906 + AluSx SINE Alu 1 311 -1 291 54 0 0 chr6 8314650 8314687 -180964867 + (GGGGA)n Simple_repeat Simple_repeat 3 39 0 2381 103 0 0 chr6 8314698 8315008 -180964546 + AluSq SINE Alu 1 310 -3 233 309 41 0 chr6 8315118 8315215 -180964339 - L1MC4a LINE L1 -1651 6157 6057 217 300 0 0 chr6 8315270 8315327 -180964227 + (TA)n Simple_repeat Simple_repeat 1 60 -10 1988 140 3 3 chr6 8315327 8315619 -180963935 - AluJb SINE Alu -18 294 3 217 300 0 0 chr6 8315619 8315631 -180963923 + (TA)n Simple_repeat Simple_repeat 59 70 0 11623 116 29 32 chr6 8315653 8316211 -180963343 + Tigger1 DNA MER2_type 24 583 -1835 2174 116 0 7 chr6 8316211 8316512 -180963042 - AluSx SINE Alu -11 301 3 11623 116 29 32 chr6 8316512 8316555 -180962999 + Tigger1 DNA MER2_type 583 625 -1793 1968 99 8 0 chr6 8316555 8316808 -180962746 + AluSc SINE Alu 39 293 -16 11623 116 29 32 chr6 8316808 8317579 -180961975 + Tigger1 DNA MER2_type 625 1397 -1021 2540 27 20 3 chr6 8317579 8317873 -180961681 - AluY SINE Alu -9 302 4 11623 116 29 32 chr6 8317873 8318220 -180961334 + Tigger1 DNA MER2_type 1397 1740 -678 2174 93 7 20 chr6 8318220 8318522 -180961032 + AluY SINE Alu 1 298 -13 11623 116 29 32 chr6 8318522 8318644 -180960910 + Tigger1 DNA MER2_type 1740 1861 -557 799 91 50 0 chr6 8318640 8318761 -180960793 + Tigger1 DNA MER2_type 397 523 -1895 * 3404 148 18 12 chr6 8318753 8319312 -180960242 + Tigger1 DNA MER2_type 1855 2416 -2 472 241 63 44 chr6 8319504 8319662 -180959892 - MER46A DNA MER2_type -74 162 2 252 301 44 44 chr6 8320043 8320179 -180959375 - HAL1b LINE L1 -708 640 505 372 320 73 21 chr6 8320191 8320425 -180959129 - HAL1b LINE L1 -887 461 216 2084 117 3 10 chr6 8320759 8321049 -180958505 + AluSx SINE Alu 1 288 -24 1948 177 74 26 chr6 8321466 8321844 -180957710 + MSTD LTR MaLR 1 396 0 2352 100 0 6 chr6 8322544 8322855 -180956699 + AluSq SINE Alu 1 309 -4 283 299 75 108 chr6 8323441 8323655 -180955899 + L2 LINE L2 2979 3185 -87 267 276 0 0 chr6 8323787 8323845 -180955709 + MLT1J LTR MaLR 242 299 -212 909 156 0 15 chr6 8323847 8323982 -180955572 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr6 8323982 8324003 -180955551 + AT_rich Low_complexity Low_complexity 1 21 0 959 154 0 0 chr6 8324174 8324317 -180955237 + AluJb SINE Alu 158 300 -12 246 275 94 22 chr6 8324386 8324524 -180955030 + MLT1J LTR MaLR 364 511 0 303 330 11 0 chr6 8325522 8325616 -180953938 + L2 LINE L2 3207 3301 -12 261 254 0 0 chr6 8325645 8325704 -180953850 + MLT1E1 LTR MaLR 596 654 0 610 359 106 21 chr6 8325704 8326322 -180953232 - L2 LINE L2 -181 3132 2447 2162 109 13 10 chr6 8326430 8326733 -180952821 - AluSx SINE Alu -8 304 1 28 71 0 0 chr6 8326861 8326917 -180952637 + AT_rich Low_complexity Low_complexity 1 56 0 213 319 151 8 chr6 8327404 8327523 -180952031 - L2 LINE L2 -328 2944 2809 183 302 0 63 chr6 8327704 8327767 -180951787 - L2 LINE L2 -810 2504 2446 446 278 85 14 chr6 8328339 8328557 -180950997 + L1ME LINE L1 5509 5745 -425 33 43 0 0 chr6 8328636 8328683 -180950871 + AT_rich Low_complexity Low_complexity 1 47 0 1575 100 256 0 chr6 8330282 8330552 -180949002 - MER44D DNA MER2_type 0 609 1 1063 248 58 111 chr6 8330713 8331246 -180948308 + MER21B LTR ERV1 24 528 -335 206 250 0 0 chr6 8331489 8331529 -180948025 - L2 LINE L2 -9 3263 3224 * 694 256 67 0 chr6 8331491 8331671 -180947883 - MIR SINE MIR -5 257 66 473 244 9 43 chr6 8331818 8331933 -180947621 - L2 LINE L2 -7 3265 3155 1990 189 64 11 chr6 8332307 8332747 -180946807 - L1MD2 LINE L1 -2 6357 5895 2390 74 10 0 chr6 8333259 8333556 -180945998 + AluSp SINE Alu 2 301 -12 2310 91 0 36 chr6 8333625 8333933 -180945621 + AluSx SINE Alu 1 297 -15 416 209 37 4 chr6 8334328 8334465 -180945089 + MER5A DNA MER1_type 1 189 0 2148 119 3 0 chr6 8336079 8336374 -180943180 - AluSp SINE Alu -17 296 1 303 219 156 0 chr6 8337337 8337433 -180942121 + L2 LINE L2 3188 3298 -15 2619 48 0 3 chr6 8337571 8337880 -180941674 - AluY SINE Alu -3 308 1 955 174 6 12 chr6 8337888 8338049 -180941505 - FRAM SINE Alu -21 155 1 2067 122 0 3 chr6 8338125 8338411 -180941143 - AluSg SINE Alu -10 300 16 237 352 145 11 chr6 8338589 8338768 -180940786 - MIR SINE MIR -11 251 49 443 193 73 0 chr6 8338798 8338910 -180940644 - L1MB7 LINE L1 -22 6149 6019 655 194 215 26 chr6 8339023 8339214 -180940340 + MIR SINE MIR 36 262 0 247 318 0 0 chr6 8339470 8339533 -180940021 + MLT1L LTR MaLR 1 63 -552 265 250 100 50 chr6 8340009 8340129 -180939425 - L2 LINE L2 -23 3290 3165 14006 120 53 39 chr6 8340994 8341940 -180937614 - Tigger1 DNA MER2_type -13 2405 1473 2420 65 0 0 chr6 8341940 8342232 -180937322 - AluY SINE Alu -19 292 1 14006 120 53 39 chr6 8342232 8342540 -180937014 - Tigger1 DNA MER2_type -945 1473 1171 2536 61 0 3 chr6 8342540 8342851 -180936703 - AluY SINE Alu 0 311 2 14006 120 53 39 chr6 8342851 8343411 -180936143 - Tigger1 DNA MER2_type -1247 1171 620 1785 142 55 0 chr6 8343411 8343686 -180935868 - AluJb SINE Alu -22 290 1 14006 120 53 39 chr6 8343686 8344242 -180935312 - Tigger1 DNA MER2_type -1798 620 1 2137 131 0 3 chr6 8347882 8348188 -180931366 - AluSx SINE Alu -7 305 1 1965 162 51 14 chr6 8398578 8398930 -180880624 - MLT1A1 LTR MaLR 0 365 1 514 133 71 20 chr6 8399072 8399170 -180880384 + Tigger2 DNA MER2_type 2398 2500 -218 2323 83 10 7 chr6 8399561 8399863 -180879691 - AluSg SINE Alu -7 303 1 294 315 0 0 chr6 8400132 8400221 -180879333 - L1MC4 LINE L1 -26 8016 7928 22 0 0 0 chr6 8400348 8400370 -180879184 + AT_rich Low_complexity Low_complexity 1 22 0 371 258 117 75 chr6 8400379 8400496 -180879058 + L1ME LINE L1 5310 5421 -700 2128 119 0 3 chr6 8400496 8400790 -180878764 - AluSx SINE Alu -19 293 1 371 258 117 75 chr6 8400790 8401006 -180878548 + L1ME LINE L1 5421 5657 -464 1851 114 107 11 chr6 8401007 8401279 -180878275 + AluSx SINE Alu 2 299 -13 2390 156 44 35 chr6 8401372 8401801 -180877753 + Tigger2a DNA MER2_type 1 433 -1 2031 113 0 7 chr6 8401910 8402185 -180877369 + AluSx SINE Alu 1 273 -39 195 100 0 0 chr6 8402197 8402227 -180877327 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 310 303 138 9 chr6 8402552 8402661 -180876893 + L2 LINE L2 3125 3247 -25 184 302 48 0 chr6 8403263 8403326 -180876228 + L3 LINE CR1 1495 1560 -17 22 35 0 0 chr6 8403356 8403385 -180876169 + AT_rich Low_complexity Low_complexity 1 29 0 237 117 33 83 chr6 8403794 8403854 -180875700 - L2 LINE L2 -337 2977 2921 2247 94 7 7 chr6 8404812 8405109 -180874445 - AluSg SINE Alu -13 297 1 253 217 87 0 chr6 8405397 8405466 -180874088 + L1ME3A LINE L1 6032 6106 -64 237 296 239 21 chr6 8405628 8405770 -180873784 - MIR SINE MIR -70 192 20 1798 166 3 54 chr6 8405884 8406156 -180873398 + MER7A DNA MER2_type 5 254 -2784 2374 81 0 0 chr6 8406156 8406443 -180873111 + AluSp SINE Alu 1 290 -23 369 0 0 0 chr6 8406443 8406484 -180873070 + (CA)n Simple_repeat Simple_repeat 2 42 0 1798 166 3 54 chr6 8406493 8406582 -180872972 + MER7A DNA MER2_type 254 346 0 226 310 26 26 chr6 8406582 8406695 -180872859 - L1MC/D LINE L1 -2009 5799 5687 23 0 0 0 chr6 8406814 8406837 -180872717 + AT_rich Low_complexity Low_complexity 1 23 0 3132 129 16 2 chr6 8407086 8407528 -180872026 + MER83 LTR ERV1 1 448 0 2222 117 0 0 chr6 8407635 8407935 -180871619 + AluSx SINE Alu 1 300 -12 360 0 0 0 chr6 8407935 8407975 -180871579 + (TA)n Simple_repeat Simple_repeat 2 41 0 29 47 0 0 chr6 8408020 8408063 -180871491 + AT_rich Low_complexity Low_complexity 1 43 0 274 324 56 9 chr6 8408107 8408215 -180871339 + MIR3 SINE MIR 15 127 -81 288 300 43 91 chr6 8408513 8408723 -180870831 + L2 LINE L2 3034 3233 -39 204 200 0 0 chr6 8409354 8409394 -180870160 + G-rich Low_complexity Low_complexity 2 41 0 228 67 0 0 chr6 8409992 8410022 -180869532 + (GAAA)n Simple_repeat Simple_repeat 3 32 0 2520 226 64 74 chr6 8410783 8411965 -180867589 + L1MC5 LINE L1 6424 7589 -372 422 235 94 34 chr6 8412073 8412222 -180867332 - MER5B DNA MER1_type -19 159 2 556 300 138 66 chr6 8412905 8413075 -180866479 - L2 LINE L2 -20 3252 3096 2199 103 0 10 chr6 8413075 8413366 -180866188 + AluSg1 SINE Alu 1 288 -21 556 300 138 66 chr6 8413366 8413528 -180866026 - L2 LINE L2 -176 3096 2896 2088 196 56 28 chr6 8413623 8413974 -180865580 + MLT2B1 LTR ERVL 3 372 -148 2400 148 28 14 chr6 8413974 8414333 -180865221 - THE1B LTR MaLR 0 364 1 2088 196 56 28 chr6 8414333 8414446 -180865108 + MLT2B1 LTR ERVL 372 480 -40 2142 104 0 7 chr6 8414452 8414732 -180864822 - AluSg SINE Alu -32 278 1 326 349 35 28 chr6 8414765 8415020 -180864534 + L2 LINE L2 2721 2977 -337 196 353 49 20 chr6 8415139 8415241 -180864313 + L2 LINE L2 3208 3312 -1 651 199 55 7 chr6 8415595 8415741 -180863813 - MIR SINE MIR -10 252 100 239 156 22 0 chr6 8416450 8416495 -180863059 + L2 LINE L2 3268 3313 0 2197 140 0 0 chr6 8416563 8416894 -180862660 + AluSx SINE Alu 1 312 0 854 156 64 64 chr6 8416919 8417092 -180862462 + FRAM SINE Alu 1 171 -5 244 246 0 0 chr6 8417095 8417152 -180862402 + A-rich Low_complexity Low_complexity 1 57 0 812 289 138 29 chr6 8417487 8417836 -180861718 - MLT1J2 LTR MaLR 0 450 64 501 296 74 16 chr6 8417870 8418059 -180861495 + LTR33 LTR ERVL 26 225 -296 325 184 23 58 chr6 8418063 8418150 -180861404 + LTR52 LTR ERVL 9 92 -329 301 247 52 58 chr6 8418220 8418374 -180861180 + LTR52 LTR ERVL 269 421 0 448 307 43 0 chr6 8418402 8418565 -180860989 + LTR33 LTR ERVL 350 519 -2 1992 125 3 38 chr6 8418928 8419247 -180860307 - AluSx SINE Alu -4 308 1 398 298 87 6 chr6 8420042 8420203 -180859351 + L3 LINE CR1 1337 1510 -67 244 225 34 56 chr6 8420287 8420376 -180859178 - L1MC5 LINE L1 -37 7924 7838 338 119 104 0 chr6 8420488 8420555 -180858999 + L1M4 LINE L1 5721 5794 -390 2456 61 0 0 chr6 8420572 8420866 -180858688 - AluY SINE Alu -17 294 1 485 298 178 24 chr6 8421288 8421808 -180857746 - L2 LINE L2 -123 3190 2585 391 284 81 49 chr6 8421810 8422095 -180857459 - MLT1J LTR MaLR -2 509 216 1198 236 119 6 chr6 8422270 8422588 -180856966 + MLT1J LTR MaLR 33 386 -125 1160 148 51 37 chr6 8422814 8422927 -180856627 + MER30 DNA MER1_type 11 130 -100 2419 74 0 13 chr6 8422927 8423238 -180856316 + AluY SINE Alu 1 307 -4 1160 148 51 37 chr6 8423238 8423340 -180856214 + MER30 DNA MER1_type 130 229 -1 2127 125 0 7 chr6 8423621 8423917 -180855637 - AluSx SINE Alu -18 294 1 202 365 66 15 chr6 8423923 8424060 -180855494 + L2 LINE L2 3146 3289 -24 1895 155 3 7 chr6 8424079 8424375 -180855179 - AluJb SINE Alu -17 295 1 440 272 103 82 chr6 8424561 8424660 -180854894 - MLT1G1 LTR MaLR -406 189 83 2235 105 26 0 chr6 8424660 8424965 -180854589 + AluSq SINE Alu 1 313 0 440 272 103 82 chr6 8424965 8425049 -180854505 - MLT1G1 LTR MaLR -512 83 2 306 276 72 125 chr6 8425051 8425355 -180854199 - MLT1G1-int LTR MaLR -1 1370 1083 2114 125 3 0 chr6 8425697 8425992 -180853562 + AluSx SINE Alu 1 296 -16 337 220 165 0 chr6 8426417 8426526 -180853028 + L1MA10 LINE L1 6201 6327 -7 37 0 0 0 chr6 8427100 8427137 -180852417 + AT_rich Low_complexity Low_complexity 1 37 0 563 218 17 165 chr6 8427199 8427389 -180852165 - MLT1G1-int LTR MaLR -770 601 384 2522 129 114 8 chr6 8427389 8427776 -180851778 - MSTA LTR MaLR 0 428 1 563 218 17 165 chr6 8427776 8427802 -180851752 - MLT1G1-int LTR MaLR -987 384 356 1795 181 0 7 chr6 8427802 8428101 -180851453 - AluJb SINE Alu -4 308 12 563 218 17 165 chr6 8428101 8428146 -180851408 - MLT1G1-int LTR MaLR -1015 356 306 2590 160 19 16 chr6 8428146 8428506 -180851048 + MSTB1 LTR MaLR 1 364 -68 2057 92 27 37 chr6 8428506 8428800 -180850754 - AluSx SINE Alu -21 291 1 2590 160 19 16 chr6 8428800 8428870 -180850684 + MSTB1 LTR MaLR 364 432 0 563 218 17 165 chr6 8428870 8429024 -180850530 - MLT1G1-int LTR MaLR -1065 306 246 236 238 0 16 chr6 8429057 8429120 -180850434 - MLT1G1-int LTR MaLR -1309 62 1 2090 111 14 0 chr6 8429126 8429415 -180850139 - AluSq SINE Alu -20 293 1 1989 111 21 17 chr6 8430527 8430816 -180848738 + AluSp SINE Alu 1 290 -23 811 265 88 8 chr6 8430833 8431082 -180848472 - L1ME3A LINE L1 -8 6162 5894 * 915 226 39 11 chr6 8431075 8431093 -180848461 - L1ME2 LINE L1 -168 5996 5980 861 151 26 0 chr6 8431093 8431245 -180848309 - L1MA10 LINE L1 -2 6332 6177 915 226 39 11 chr6 8431245 8431505 -180848049 - L1ME2 LINE L1 -184 5980 5754 344 183 0 0 chr6 8431505 8431565 -180847989 - L1ME3A LINE L1 -262 5908 5849 370 282 149 51 chr6 8431863 8432118 -180847436 + MLT1I LTR MaLR 63 342 -67 1732 165 6 22 chr6 8432232 8432548 -180847006 - AluJo SINE Alu 0 312 2 4856 141 24 3 chr6 8432705 8433472 -180846082 + L1PA16 LINE L1 5363 6145 -21 778 178 0 0 chr6 8433529 8433647 -180845907 + FLAM_A SINE Alu 6 123 -19 1975 167 3 0 chr6 8433841 8434146 -180845408 + AluJb SINE Alu 1 306 -6 2337 89 3 7 chr6 8434718 8435020 -180844534 - AluSg SINE Alu -9 301 1 684 245 26 49 chr6 8435064 8435329 -180844225 + MIR SINE MIR 2 260 -2 1688 92 0 0 chr6 8435659 8435876 -180843678 - AluY SINE Alu -11 300 84 276 149 0 0 chr6 8435908 8435955 -180843599 + (TCCA)n Simple_repeat Simple_repeat 3 49 0 273 327 75 9 chr6 8435957 8436064 -180843490 - L2 LINE L2 -5 3308 3195 1805 102 94 23 chr6 8436814 8437107 -180842447 + AluSx SINE Alu 1 312 0 201 286 82 0 chr6 8437410 8437459 -180842095 + L2 LINE L2 3207 3259 -13 423 236 0 81 chr6 8437487 8437610 -180841944 - MER69 DNA AcHobo 0 2526 2414 2015 168 8 46 chr6 8438887 8439279 -180840275 - MLT1B LTR MaLR -6 384 8 1879 144 0 3 chr6 8439368 8439652 -180839902 - AluJb SINE Alu -3 309 27 1747 146 4 0 chr6 8439912 8440166 -180839388 - AluSx SINE Alu -57 255 1 1992 127 51 7 chr6 8440534 8440826 -180838728 - AluSx SINE Alu -7 305 1 467 144 152 30 chr6 8440913 8441045 -180838509 - L2 LINE L2 -8 3305 3158 268 141 109 47 chr6 8441052 8441116 -180838438 + HsTC2 DNA Tc2 3 70 -1828 1827 224 50 42 chr6 8441150 8441527 -180838027 + HsTC2 DNA Tc2 1274 1659 -239 2334 94 3 0 chr6 8441527 8441835 -180837719 - AluSq SINE Alu -4 309 1 1827 224 50 42 chr6 8441835 8442077 -180837477 + HsTC2 DNA Tc2 1659 1898 0 331 339 5 16 chr6 8442184 8442323 -180837231 + MIR SINE MIR 30 144 -64 200 286 14 14 chr6 8442385 8442455 -180837099 - L2 LINE L2 -49 3264 3195 2009 146 13 7 chr6 8442850 8443158 -180836396 - AluSx SINE Alu -2 310 1 383 261 45 18 chr6 8444558 8444669 -180834885 - MIR SINE MIR -92 170 57 42 65 0 0 chr6 8444677 8444754 -180834800 + AT_rich Low_complexity Low_complexity 1 77 0 2268 83 0 0 chr6 8444832 8445108 -180834446 - AluSc SINE Alu -14 295 20 184 315 102 39 chr6 8445188 8445315 -180834239 + MIR SINE MIR 13 147 -115 2053 139 0 10 chr6 8446376 8446686 -180832868 + AluJb SINE Alu 6 312 0 22 70 0 0 chr6 8447105 8447148 -180832406 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr6 8447177 8447212 -180832342 + AT_rich Low_complexity Low_complexity 1 35 0 317 227 0 13 chr6 8447394 8447469 -180832085 + MLT1I LTR MaLR 327 400 -9 1912 147 10 7 chr6 8448988 8449295 -180830259 - AluSx SINE Alu -4 308 1 21 0 0 0 chr6 8449411 8449432 -180830122 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr6 8449432 8449453 -180830101 + (TAAAAA)n Simple_repeat Simple_repeat 4 24 0 2219 98 0 3 chr6 8450230 8450526 -180829028 - AluSq SINE Alu -18 295 1 342 61 0 0 chr6 8450806 8450855 -180828699 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 281 316 105 0 chr6 8450922 8451055 -180828499 + MIR SINE MIR 110 256 -6 189 162 0 0 chr6 8451153 8451173 -180828381 + GA-rich Low_complexity Low_complexity 2 24 -14 2261 117 0 3 chr6 8451173 8451473 -180828081 + AluSq SINE Alu 1 299 -14 189 162 0 0 chr6 8451473 8451489 -180828065 + GA-rich Low_complexity Low_complexity 23 38 0 338 283 71 0 chr6 8451625 8451738 -180827816 - L2 LINE L2 -16 3256 3136 225 65 0 0 chr6 8453138 8453169 -180826385 + (CAT)n Simple_repeat Simple_repeat 2 32 0 308 231 15 92 chr6 8454222 8454352 -180825202 + MIR SINE MIR 84 203 -59 180 0 0 0 chr6 8454352 8454372 -180825182 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 274 318 130 7 chr6 8454431 8454585 -180824969 - MIR3 SINE MIR -32 176 4 2315 159 20 54 chr6 8455393 8455682 -180823872 - MSTB LTR MaLR 0 426 156 2247 96 10 3 chr6 8455682 8455975 -180823579 - AluSp SINE Alu -18 295 1 2315 159 20 54 chr6 8455975 8456126 -180823428 - MSTB LTR MaLR -270 156 1 1604 194 169 54 chr6 8457409 8457448 -180822106 - MLT2B1 LTR ERVL 0 520 487 405 0 0 0 chr6 8457448 8457493 -180822061 + (TG)n Simple_repeat Simple_repeat 1 45 0 1604 194 169 54 chr6 8457493 8457916 -180821638 - MLT2B1 LTR ERVL -33 487 5 311 331 103 0 chr6 8458198 8458281 -180821273 + MIR3 SINE MIR 31 104 -104 1528 186 49 3 chr6 8458281 8458566 -180820988 - AluJb SINE Alu -12 300 3 311 331 103 0 chr6 8458566 8458618 -180820936 + MIR3 SINE MIR 104 180 -28 844 201 0 0 chr6 8459059 8459203 -180820351 - Tigger5 DNA MER2_type 0 2323 2180 901 179 19 13 chr6 8459204 8459360 -180820194 - Tigger5 DNA MER2_type -2166 157 1 1196 224 44 108 chr6 8460766 8461010 -180818544 + MLT1C LTR MaLR 1 198 -269 2241 125 0 0 chr6 8461010 8461322 -180818232 + AluSx SINE Alu 1 312 0 1196 224 44 108 chr6 8461322 8461576 -180817978 + MLT1C LTR MaLR 198 467 0 978 210 68 5 chr6 8461689 8461908 -180817646 + MER96B DNA MER1_type? 6 238 -179 307 256 31 39 chr6 8462741 8462870 -180816684 - L1ME1 LINE L1 -43 6123 5996 2146 240 28 9 chr6 8462916 8463490 -180816064 - L1M4 LINE L1 -1120 5262 4678 704 174 8 0 chr6 8463496 8463617 -180815937 - MER31A LTR ERV1 0 485 364 2384 239 80 3 chr6 8463617 8464370 -180815184 - L1M4c LINE L1 -2732 3650 2840 1817 166 68 91 chr6 8464416 8464964 -180814590 - LTR49 LTR ERV1 -49 546 12 3782 251 36 29 chr6 8464971 8465610 -180813944 - L1M4c LINE L1 -3531 2851 2218 2072 143 10 0 chr6 8465610 8465917 -180813637 - AluSg SINE Alu 0 310 1 3782 251 36 29 chr6 8465917 8467000 -180812554 - L1M4c LINE L1 -4164 2218 1023 1783 175 0 3 chr6 8467638 8467954 -180811600 - AluJb SINE Alu 0 315 1 2717 113 40 38 chr6 8468317 8468740 -180810814 - MSTA LTR MaLR -4 424 1 2505 77 0 0 chr6 8468851 8469150 -180810404 - AluSc SINE Alu -10 299 1 221 316 79 82 chr6 8469224 8469553 -180810001 - L2 LINE L2 0 3272 2945 301 340 7 44 chr6 8469802 8469921 -180809633 - MIR SINE MIR -67 141 42 2237 37 67 0 chr6 8469921 8470190 -180809364 - AluY SINE Alu -15 296 10 301 340 7 44 chr6 8470190 8470229 -180809325 - MIR SINE MIR -166 42 3 2333 97 3 7 chr6 8470282 8470592 -180808962 - AluSx SINE Alu -3 309 1 4276 132 97 128 chr6 8470842 8472065 -180807489 + pTR5 LTR ERV1 738 2219 -219 2931 13 0 0 chr6 8472065 8472383 -180807171 + AluYb8 SINE Alu 1 318 0 4276 132 97 128 chr6 8472383 8472597 -180806957 + pTR5 LTR ERV1 2219 2438 0 243 314 23 12 chr6 8472670 8472756 -180806798 - MIR SINE MIR -108 154 68 240 86 0 0 chr6 8473288 8473323 -180806231 + (TTCCC)n Simple_repeat Simple_repeat 4 38 0 213 213 66 33 chr6 8473472 8473533 -180806021 - L2 LINE L2 0 3313 3251 1446 242 114 39 chr6 8474432 8474895 -180804659 - MLT1D LTR MaLR -7 498 1 445 304 59 42 chr6 8474894 8475131 -180804423 + MER112 DNA MER1_type 2 242 -18 * 210 371 0 53 chr6 8476328 8476479 -180803075 + MIR3 SINE MIR 16 158 -50 2414 64 0 3 chr6 8476487 8476784 -180802770 - AluY SINE Alu -14 297 2 2604 65 0 0 chr6 8477899 8478206 -180801348 + AluY SINE Alu 1 307 -4 5831 147 83 53 chr6 8478650 8479557 -180799997 - Tigger3b DNA MER2_type -1797 1231 279 2285 102 3 0 chr6 8479557 8479861 -180799693 + AluSq SINE Alu 1 305 -8 5831 147 83 53 chr6 8479861 8480139 -180799415 - Tigger3b DNA MER2_type -2749 279 11 2187 102 0 22 chr6 8480140 8480453 -180799101 + AluSx SINE Alu 1 306 -6 204 97 0 0 chr6 8480820 8480851 -180798703 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1101 272 83 23 chr6 8480853 8481448 -180798106 - L2 LINE L2 -10 3303 2679 1320 256 85 67 chr6 8481694 8482163 -180797391 - L1ME3A LINE L1 -116 6054 5595 1512 183 29 26 chr6 8482163 8482474 -180797080 - AluJo SINE Alu 0 312 1 1320 256 85 67 chr6 8482474 8483078 -180796476 - L1ME3A LINE L1 -575 5595 4962 336 204 9 19 chr6 8483083 8483191 -180796363 + CT-rich Low_complexity Low_complexity 3 109 0 515 214 172 0 chr6 8483340 8483485 -180796069 - MER5B DNA MER1_type 0 178 9 603 268 13 0 chr6 8483529 8483686 -180795868 - MER53 DNA DNA -1 188 30 316 135 27 0 chr6 8483712 8483786 -180795768 + (TA)n Simple_repeat Simple_repeat 1 76 0 1670 115 93 22 chr6 8483786 8484055 -180795499 - AluSx SINE Alu -24 288 1 393 276 58 63 chr6 8485044 8485218 -180794336 - MIR SINE MIR -70 192 20 1973 148 0 10 chr6 8485433 8485730 -180793824 - AluJb SINE Alu -16 296 3 364 297 59 109 chr6 8486021 8486277 -180793277 - L2 LINE L2 0 3272 3030 280 309 140 11 chr6 8487569 8487747 -180791807 - MIR SINE MIR -6 256 56 530 208 10 10 chr6 8487966 8488177 -180791377 + CT-rich Low_complexity Low_complexity 1 211 0 183 327 57 86 chr6 8488223 8488572 -180790982 - L2 LINE L2 -61 3211 2873 2317 180 46 58 chr6 8488952 8489518 -180790036 - MER89 LTR ERV1 0 559 1 242 211 0 14 chr6 8491596 8491604 -180787950 + (TA)n Simple_repeat Simple_repeat 1 8 -62 888 109 8 0 chr6 8491604 8491723 -180787831 - L1PA11 LINE L1 -2 6172 6053 242 211 0 14 chr6 8491723 8491785 -180787769 + (TA)n Simple_repeat Simple_repeat 8 70 0 2501 26 0 48 chr6 8491786 8492097 -180787457 - AluY SINE Alu -15 296 1 6045 107 4 13 chr6 8492100 8492778 -180786776 - L1PA11 LINE L1 -110 6064 5381 2530 68 0 0 chr6 8492778 8493089 -180786465 - AluY SINE Alu 0 311 1 6045 107 4 13 chr6 8493089 8493848 -180785706 - L1PA11 LINE L1 -793 5381 4639 23 33 0 0 chr6 8493848 8493878 -180785676 + AT_rich Low_complexity Low_complexity 1 30 0 277 300 0 22 chr6 8495146 8495236 -180784318 + GA-rich Low_complexity Low_complexity 2 89 0 1946 158 37 23 chr6 8495567 8495921 -180783633 - MLT1A1 LTR MaLR -6 359 1 30 45 0 0 chr6 8496578 8496622 -180782932 + AT_rich Low_complexity Low_complexity 1 44 0 2185 117 0 7 chr6 8496762 8497060 -180782494 - AluSx SINE Alu -16 296 1 2246 218 16 20 chr6 8497069 8497619 -180781935 - L1MB8 LINE L1 -73 6105 5558 222 62 0 0 chr6 8497622 8497654 -180781900 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1967 140 0 0 chr6 8497654 8497933 -180781621 - AluSx SINE Alu -33 279 1 395 272 7 0 chr6 8499388 8499535 -180780019 + GA-rich Low_complexity Low_complexity 4 151 0 2595 126 15 106 chr6 8499800 8500032 -180779522 + MER4B LTR ERV1 1 253 -526 2363 98 23 0 chr6 8500032 8500337 -180779217 + AluSx SINE Alu 1 312 0 2595 126 15 106 chr6 8500337 8500779 -180778775 + MER4B LTR ERV1 253 779 0 21 36 0 0 chr6 8502954 8502982 -180776572 + AT_rich Low_complexity Low_complexity 1 28 0 184 255 20 20 chr6 8503127 8503178 -180776376 + MIR SINE MIR 46 96 -166 2455 123 27 11 chr6 8503625 8503992 -180775562 - L1PB3 LINE L1 0 6154 5782 283 141 35 24 chr6 8503999 8504084 -180775470 + (TA)n Simple_repeat Simple_repeat 1 86 0 6436 137 16 1 chr6 8504129 8505530 -180774024 - L1PB2 LINE L1 -3 6148 4724 499 120 27 0 chr6 8505528 8505603 -180773951 - L1PB3 LINE L1 -366 5785 5709 * 180 0 0 0 chr6 8505739 8505759 -180773795 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1956 137 0 0 chr6 8505759 8506037 -180773517 - AluSg SINE Alu -32 278 1 730 193 37 7 chr6 8506068 8506203 -180773351 - Tigger7 DNA MER2_type -566 139 1 3158 116 67 28 chr6 8506206 8506740 -180772814 + L1MA8 LINE L1 5734 6288 -3 916 229 76 5 chr6 8507371 8507581 -180771973 - MER89 LTR ERV1 0 559 335 1798 210 14 25 chr6 8507583 8507949 -180771605 + MLT1A1 LTR MaLR 4 365 0 1456 208 38 29 chr6 8507949 8508283 -180771271 - MER89 LTR ERV1 -222 337 1 225 0 0 0 chr6 8509564 8509589 -180769965 + (T)n Simple_repeat Simple_repeat 1 25 0 2174 105 7 3 chr6 8509925 8510221 -180769333 + AluSc SINE Alu 1 297 -12 1854 97 0 8 chr6 8510739 8510987 -180768567 - AluSg SINE Alu -5 305 60 180 290 103 90 chr6 8511060 8511370 -180768184 + L2 LINE L2 2379 2692 -622 202 368 0 11 chr6 8511519 8511614 -180767940 + MER5B DNA MER1_type 62 155 -23 217 313 17 26 chr6 8512400 8512515 -180767039 + GA-rich Low_complexity Low_complexity 5 118 0 192 40 0 0 chr6 8512599 8512624 -180766930 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 1753 147 6 45 chr6 8512624 8512937 -180766617 - AluJo SINE Alu -11 301 1 257 163 0 0 chr6 8516212 8516255 -180763299 + L2 LINE L2 3258 3300 -13 235 292 96 18 chr6 8516512 8516701 -180762853 + MIR SINE MIR 3 207 -55 1758 114 19 19 chr6 8517331 8517594 -180761960 - AluSx SINE Alu -8 304 42 23 0 0 0 chr6 8519003 8519026 -180760528 + AT_rich Low_complexity Low_complexity 1 23 0 1749 171 3 7 chr6 8519052 8519345 -180760209 - AluJb SINE Alu -20 292 1 283 284 23 11 chr6 8519684 8519772 -180759782 - MER5B DNA MER1_type -86 92 4 1976 176 42 3 chr6 8519914 8520249 -180759305 - MER7A DNA MER2_type 0 346 1 265 298 0 21 chr6 8520571 8520665 -180758889 - L1MC5 LINE L1 -62 7899 7808 21 0 0 0 chr6 8521665 8521686 -180757868 + AT_rich Low_complexity Low_complexity 1 21 0 413 254 0 45 chr6 8521779 8521889 -180757665 + L1ME1 LINE L1 6035 6139 -27 706 162 0 0 chr6 8522139 8522256 -180757298 - AluJo SINE Alu -3 309 193 818 165 0 0 chr6 8522272 8522393 -180757161 - AluJo SINE Alu -187 125 5 7217 5 0 0 chr6 8523361 8524114 -180755440 + L1PA2 LINE L1 5403 6155 0 21 36 0 0 chr6 8524147 8524175 -180755379 + AT_rich Low_complexity Low_complexity 1 28 0 1548 86 10 0 chr6 8524628 8524825 -180754729 - AluY SINE Alu -15 296 98 428 341 24 12 chr6 8525231 8525395 -180754159 - MIR3 SINE MIR -5 203 38 1905 147 0 0 chr6 8526561 8526840 -180752714 + AluJb SINE Alu 5 283 -29 234 0 0 0 chr6 8527282 8527308 -180752246 + (A)n Simple_repeat Simple_repeat 1 26 0 1917 137 29 0 chr6 8528026 8528304 -180751250 - AluJo SINE Alu -26 286 1 1375 178 22 0 chr6 8528469 8528700 -180750854 - AluJo SINE Alu -76 236 1 363 64 0 0 chr6 8529453 8529500 -180750054 - MADE1 DNA Mariner 0 80 34 2101 114 4 0 chr6 8529504 8529832 -180749722 + AluSx SINE Alu 1 329 0 2271 170 83 11 chr6 8529839 8530275 -180749279 + MLT1C LTR MaLR 1 467 0 969 168 21 26 chr6 8530335 8530525 -180749029 - MER53 DNA DNA 0 189 1 1937 179 55 60 chr6 8530703 8531275 -180748279 + MLT2A2 LTR ERVL 1 554 0 248 204 0 0 chr6 8531278 8531322 -180748232 - MER2 DNA MER2_type -21 324 281 21 0 0 0 chr6 8531333 8531354 -180748200 + AT_rich Low_complexity Low_complexity 1 21 0 5786 164 65 45 chr6 8531392 8531615 -180747939 - Tigger3b DNA MER2_type -1797 1231 1014 354 23 0 0 chr6 8531615 8531658 -180747896 + (TG)n Simple_repeat Simple_repeat 1 43 0 1957 114 7 21 chr6 8531658 8531938 -180747616 - AluSc SINE Alu -33 276 1 5786 164 65 45 chr6 8531938 8532259 -180747295 - Tigger3b DNA MER2_type -2014 1014 701 2249 118 0 3 chr6 8532259 8532564 -180746990 - AluSq SINE Alu -9 304 1 5786 164 65 45 chr6 8532564 8532853 -180746701 - Tigger3b DNA MER2_type -2327 701 419 2082 133 30 0 chr6 8532853 8533153 -180746401 - AluSx SINE Alu -3 309 1 5786 164 65 45 chr6 8533153 8533292 -180746262 - Tigger3b DNA MER2_type -2609 419 284 1585 58 0 0 chr6 8533292 8533512 -180746042 - AluY SINE Alu 0 313 94 5786 164 65 45 chr6 8533512 8533740 -180745814 - Tigger3b DNA MER2_type -2744 284 1 598 103 32 142 chr6 8533740 8533885 -180745669 - MER2 DNA MER2_type -215 130 1 584 216 0 0 chr6 8533908 8534024 -180745530 + MIR3 SINE MIR 67 182 -26 2851 10 0 0 chr6 8534392 8534700 -180744854 - AluYb8 SINE Alu -10 308 1 2280 109 0 0 chr6 8535049 8535352 -180744202 - AluSx SINE Alu -9 303 1 635 183 30 98 chr6 8535464 8535628 -180743926 + AluJb SINE Alu 129 281 -31 1511 134 4 4 chr6 8535779 8536010 -180743544 + AluJo SINE Alu 1 231 -81 1604 185 20 10 chr6 8537515 8537813 -180741741 + AluJo SINE Alu 1 301 -11 218 228 18 0 chr6 8537827 8537884 -180741670 - MIR SINE MIR -55 207 150 2313 113 3 0 chr6 8537900 8538211 -180741343 + AluSx SINE Alu 1 312 0 472 271 60 13 chr6 8538396 8538547 -180741007 - MIR SINE MIR -57 205 48 629 247 78 18 chr6 8538805 8538971 -180740583 + MER5A DNA MER1_type 13 188 -1 1872 150 35 0 chr6 8539038 8539325 -180740229 - AluJb SINE Alu -11 301 5 188 404 10 10 chr6 8540042 8540146 -180739408 - MIR SINE MIR -65 143 40 248 276 164 9 chr6 8540193 8540309 -180739245 + MER5A DNA MER1_type 6 139 -50 2346 113 0 0 chr6 8540323 8540625 -180738929 + AluSq SINE Alu 1 302 -11 802 219 44 11 chr6 8540757 8540940 -180738614 + MER5A DNA MER1_type 1 189 0 232 318 61 0 chr6 8541688 8541754 -180737800 - L2 LINE L2 -55 3217 3148 1136 297 107 9 chr6 8541882 8542340 -180737214 - LTR33A LTR ERVL -14 509 7 23 0 0 0 chr6 8542581 8542604 -180736950 + AT_rich Low_complexity Low_complexity 1 23 0 968 70 0 0 chr6 8542726 8542887 -180736667 + AluSg/x SINE Alu 172 332 0 574 273 58 73 chr6 8543145 8543320 -180736234 - MER5C DNA MER1_type -54 270 99 2084 139 0 3 chr6 8543320 8543630 -180735924 + AluSx SINE Alu 1 309 -3 574 273 58 73 chr6 8543630 8543714 -180735840 - MER5C DNA MER1_type -225 99 15 2271 108 0 0 chr6 8543939 8544235 -180735319 - AluSq SINE Alu -17 296 1 276 53 0 0 chr6 8544689 8544727 -180734827 + (CA)n Simple_repeat Simple_repeat 2 39 0 534 277 15 7 chr6 8546653 8546790 -180732764 + MIR3 SINE MIR 29 166 -42 219 69 0 0 chr6 8549057 8549086 -180730468 + (A)n Simple_repeat Simple_repeat 1 29 0 1604 196 86 65 chr6 8549567 8550077 -180729477 + LTR55 LTR ERV 21 541 -7 1725 109 79 78 chr6 8550227 8550664 -180728890 + LTR64 LTR ERVK 1 499 -59 1896 155 0 16 chr6 8550870 8551180 -180728374 - AluJo SINE Alu -3 309 5 1811 172 0 10 chr6 8551189 8551486 -180728068 - AluJo SINE Alu -18 294 1 380 266 21 0 chr6 8551968 8552062 -180727492 - MER5A DNA MER1_type -85 104 9 1146 220 128 90 chr6 8552320 8552889 -180726665 + MLT1G1 LTR MaLR 2 592 -3 7988 32 0 0 chr6 8554533 8556064 -180723490 - L1PA4 LINE L1 -4 6151 4623 253 93 37 0 chr6 8556192 8556246 -180723308 + (TCTA)n Simple_repeat Simple_repeat 2 57 0 208 218 0 36 chr6 8557009 8557064 -180722490 - L2 LINE L2 0 3313 3261 817 301 18 11 chr6 8557617 8557903 -180721651 + L1ME LINE L1 16 303 -5767 915 248 66 33 chr6 8557908 8558295 -180721259 + L1ME LINE L1 726 1163 -4982 2575 272 65 26 chr6 8558308 8559500 -180720054 + L1ME LINE L1 1261 2543 -3537 2387 174 69 21 chr6 8559500 8559936 -180719618 + MSTB2 LTR MaLR 1 457 0 2575 272 65 26 chr6 8559936 8560377 -180719177 + L1ME LINE L1 2543 2965 -3115 782 200 0 0 chr6 8560393 8560513 -180719041 + FLAM_C SINE Alu 2 121 -22 809 117 45 16 chr6 8560523 8561143 -180718411 + (TA)n Simple_repeat Simple_repeat 1 637 0 430 244 29 96 chr6 8561144 8561353 -180718201 + L1M4 LINE L1 4647 4841 -1305 409 165 25 0 chr6 8561351 8561430 -180718124 + L1MC4 LINE L1 7962 8042 0 * 523 304 88 20 chr6 8561980 8562230 -180717324 + LTR16C LTR ERVL 225 491 0 422 261 152 62 chr6 8562235 8562763 -180716791 + L1ME LINE L1 2860 3434 -2646 254 350 44 37 chr6 8562952 8563246 -180716308 + L1ME LINE L1 3915 4210 -1870 422 286 111 78 chr6 8563259 8563450 -180716104 - MLT1J2 LTR MaLR -3 447 264 652 193 64 150 chr6 8563450 8563683 -180715871 - MER58C DNA MER1_type -2 213 1 422 286 111 78 chr6 8563683 8563889 -180715665 - MLT1J2 LTR MaLR -186 264 37 28 0 0 0 chr6 8563922 8563950 -180715604 + AT_rich Low_complexity Low_complexity 1 28 0 310 298 35 43 chr6 8564093 8564234 -180715320 + L1ME LINE L1 4401 4540 -1540 1926 152 0 7 chr6 8564235 8564525 -180715029 + AluJb SINE Alu 1 288 -24 22 0 0 0 chr6 8564655 8564677 -180714877 + AT_rich Low_complexity Low_complexity 1 22 0 242 278 97 16 chr6 8564779 8564902 -180714652 + MIR SINE MIR 34 171 -81 273 222 0 0 chr6 8565070 8565133 -180714421 + GA-rich Low_complexity Low_complexity 2 64 0 288 274 51 33 chr6 8565196 8565321 -180714233 + MIR SINE MIR 35 164 -72 519 250 48 48 chr6 8565335 8565437 -180714117 - MIR SINE MIR 0 262 161 228 67 0 0 chr6 8565437 8565467 -180714087 + (CAT)n Simple_repeat Simple_repeat 1 30 0 519 250 48 48 chr6 8565467 8565572 -180713982 - MIR SINE MIR -100 162 55 2230 64 7 3 chr6 8565655 8565971 -180713583 + AluY SINE Alu 1 317 0 220 280 0 0 chr6 8566128 8566178 -180713376 + MIR SINE MIR 201 250 -12 227 268 12 24 chr6 8566195 8566277 -180713277 + L2 LINE L2 3192 3272 0 186 143 0 0 chr6 8567182 8567217 -180712337 + (GA)n Simple_repeat Simple_repeat 1 35 0 2130 111 0 4 chr6 8568218 8568530 -180711024 - AluSc SINE Alu 0 311 1 1585 192 47 25 chr6 8569414 8569815 -180709739 - L1MDb LINE L1 -5197 1212 803 902 126 35 0 chr6 8569819 8569993 -180709561 + CT-rich Low_complexity Low_complexity 1 180 0 303 53 0 0 chr6 8569993 8570031 -180709523 + (TTTCC)n Simple_repeat Simple_repeat 4 41 0 2010 128 13 3 chr6 8570037 8570342 -180709212 - AluSx SINE Alu -4 308 1 1826 205 82 45 chr6 8570345 8570978 -180708576 - L1MDb LINE L1 -5595 814 27 369 323 51 31 chr6 8571689 8571884 -180707670 + L3 LINE CR1 1096 1294 -283 229 250 78 16 chr6 8571893 8571957 -180707597 - MER5A DNA MER1_type -108 81 14 2401 105 0 0 chr6 8571992 8572298 -180707256 - AluSq SINE Alu -7 306 1 228 204 8 45 chr6 8572385 8572517 -180707037 + GA-rich Low_complexity Low_complexity 4 130 0 700 238 58 0 chr6 8572953 8573125 -180706429 - MER5A DNA MER1_type 0 189 8 264 358 104 31 chr6 8573578 8573937 -180705617 + L2 LINE L2 2722 3054 -218 2132 136 3 0 chr6 8573937 8574245 -180705309 - AluSx SINE Alu -3 309 1 264 358 104 31 chr6 8574245 8574317 -180705237 + L2 LINE L2 3054 3119 -153 538 227 18 0 chr6 8574317 8574427 -180705127 - MER81 DNA DNA -2 112 1 264 358 104 31 chr6 8574427 8574491 -180705063 + L2 LINE L2 3119 3255 -17 1117 208 95 72 chr6 8575867 8576090 -180703464 - MLT1H1 LTR MaLR 0 555 318 2211 196 44 40 chr6 8576090 8576591 -180702963 + MLT1D LTR MaLR 1 503 -2 1117 208 95 72 chr6 8576591 8576756 -180702798 - MLT1H1 LTR MaLR -237 318 158 408 266 11 11 chr6 8576766 8576860 -180702694 - MLT1H1 LTR MaLR -483 107 14 2328 151 54 35 chr6 8578314 8578738 -180700816 - MSTB1 LTR MaLR 0 432 1 594 231 68 107 chr6 8579082 8579134 -180700420 - MLT1J LTR MaLR 0 511 458 1619 164 22 4 chr6 8579134 8579409 -180700145 + AluJb SINE Alu 1 280 -32 594 231 68 107 chr6 8579409 8579711 -180699843 - MLT1J LTR MaLR -53 458 171 648 211 0 0 chr6 8581290 8581404 -180698150 - AluY SINE Alu -81 230 117 213 94 0 0 chr6 8581971 8582003 -180697551 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1994 158 0 0 chr6 8582020 8582317 -180697237 - AluJb SINE Alu -15 297 1 294 276 32 83 chr6 8582697 8582914 -180696640 - L2 LINE L2 -252 3061 2856 1503 217 116 8 chr6 8583093 8583471 -180696083 + L1MA4A LINE L1 5623 6041 -262 * 1924 150 32 0 chr6 8583245 8583559 -180695995 + L1PB4 LINE L1 5810 6133 -23 620 66 0 11 chr6 8583565 8583656 -180695898 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 455 280 24 24 chr6 8583776 8583944 -180695610 - HAL1 LINE L1 -122 2385 2218 306 243 98 35 chr6 8583949 8584122 -180695432 - HAL1 LINE L1 -338 2169 1986 296 258 143 62 chr6 8584141 8584350 -180695204 - HAL1 LINE L1 -1862 645 420 351 147 40 133 chr6 8584385 8584535 -180695019 - HAL1 LINE L1 -2323 184 49 2114 94 0 69 chr6 8587715 8588035 -180691519 + AluSx SINE Alu 1 298 -14 229 279 25 13 chr6 8588461 8588540 -180691014 + L2 LINE L2 3232 3311 -2 2109 109 3 0 chr6 8588622 8588915 -180690639 - AluSx SINE Alu -18 294 1 513 225 53 64 chr6 8589049 8589236 -180690318 + pTR5 LTR ERV1 743 927 -1511 3221 144 217 60 chr6 8589537 8590251 -180689303 + LTR12 LTR ERV1 1 826 0 674 240 17 9 chr6 8590441 8590670 -180688884 - L1MB1 LINE L1 -1 6167 5879 2585 154 39 15 chr6 8590699 8591079 -180688475 + L1MB1 LINE L1 5403 5798 -370 342 67 0 0 chr6 8591079 8591124 -180688430 + (TA)n Simple_repeat Simple_repeat 2 46 0 2585 154 39 15 chr6 8591124 8591211 -180688343 + L1MB1 LINE L1 5798 5881 -287 225 319 53 53 chr6 8591213 8591326 -180688228 - MIR SINE MIR -99 163 51 410 241 0 0 chr6 8591364 8591472 -180688082 - L1M4 LINE L1 -1888 4258 4151 1634 248 21 19 chr6 8591496 8591920 -180687634 - L1M4 LINE L1 -1949 4197 3773 449 327 91 44 chr6 8592232 8592617 -180686937 + MLT1L LTR MaLR 112 514 -101 214 288 76 0 chr6 8592799 8592865 -180686689 + MER5A DNA MER1_type 115 185 -4 216 0 0 0 chr6 8593591 8593615 -180685939 + (CA)n Simple_repeat Simple_repeat 1 24 0 2127 116 3 28 chr6 8594154 8594473 -180685081 - AluSx SINE Alu -1 311 1 6439 173 34 3 chr6 8594484 8595940 -180683614 - L1MC1 LINE L1 0 6333 4812 522 0 0 0 chr6 8595940 8595998 -180683556 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 6439 173 34 3 chr6 8595998 8596191 -180683363 - L1MC1 LINE L1 -1521 4812 4626 276 313 108 33 chr6 8596267 8596481 -180683073 + L2 LINE L2 1766 1995 -1319 346 313 38 15 chr6 8596713 8596844 -180682710 + L2 LINE L2 3137 3270 -2 1515 230 86 24 chr6 8597717 8598751 -180680803 - L1MB8 LINE L1 -10 6168 4944 218 291 0 0 chr6 8599296 8599351 -180680203 - L2 LINE L2 -81 3191 3137 193 244 209 0 chr6 8599771 8599857 -180679697 + MIR SINE MIR 41 144 -118 1691 178 3 22 chr6 8601263 8601577 -180677977 - AluJb SINE Alu 0 312 5 2584 164 22 22 chr6 8602956 8603413 -180676141 - LTR32 LTR ERVL 0 471 15 232 304 174 50 chr6 8604172 8604448 -180675106 + L2 LINE L2 2887 3204 -68 249 33 0 0 chr6 8604448 8604478 -180675076 + (TC)n Simple_repeat Simple_repeat 1 30 0 232 304 174 50 chr6 8604478 8604500 -180675054 + L2 LINE L2 3204 3222 -50 2000 118 29 0 chr6 8604750 8605030 -180674524 - AluSx SINE Alu -19 293 6 26 0 0 0 chr6 8605276 8605302 -180674252 + AT_rich Low_complexity Low_complexity 1 26 0 1403 121 0 0 chr6 8605321 8605503 -180674051 - AluSx SINE Alu -130 182 1 357 24 0 0 chr6 8605986 8606028 -180673526 + (TCCCC)n Simple_repeat Simple_repeat 2 43 0 2471 28 0 0 chr6 8607487 8607886 -180671668 - L1P2 LINE L1 -608 5547 5149 310 224 35 24 chr6 8608162 8608247 -180671307 + L1MC2 LINE L1 5239 5324 -822 997 185 33 63 chr6 8608259 8608529 -180671025 + L1MC3 LINE L1 6564 6825 -960 5298 62 24 1 chr6 8608629 8609287 -180670267 - LTR12 LTR ERV1 -40 674 2 2496 204 9 8 chr6 8609287 8609817 -180669737 + L1 LINE L1 4534 5064 -1082 7637 134 45 3 chr6 8609926 8611274 -180668280 - L1M1 LINE L1 -3927 3638 2233 1186 187 103 11 chr6 8611381 8611643 -180667911 + L1MC2 LINE L1 5777 6062 -282 273 77 0 0 chr6 8611658 8611697 -180667857 + L1MA3 LINE L1 6267 6305 0 489 307 62 36 chr6 8611727 8612176 -180667378 - L1MDa LINE L1 -4815 1725 1265 1528 258 13 12 chr6 8613535 8614071 -180665483 + MLT2F LTR ERVL 3 584 -79 1119 178 50 78 chr6 8614259 8614540 -180665014 + L1MB1 LINE L1 5788 6060 -108 909 122 7 7 chr6 8614554 8614702 -180664852 + AluSg/x SINE Alu 165 312 0 363 170 44 41 chr6 8614740 8614869 -180664685 + L1MB1 LINE L1 6044 6167 -1 211 292 36 36 chr6 8614878 8615015 -180664539 + MIR SINE MIR 83 219 -43 357 24 0 0 chr6 8615114 8615156 -180664398 + (CA)n Simple_repeat Simple_repeat 1 42 0 937 174 37 5 chr6 8615587 8615777 -180663777 + MLT2B1 LTR ERVL 1 196 -324 372 85 0 0 chr6 8617223 8617270 -180662284 + (TCCCC)n Simple_repeat Simple_repeat 2 48 0 1995 122 59 0 chr6 8617270 8617556 -180661998 - AluSx SINE Alu -9 303 1 279 0 0 0 chr6 8617744 8617775 -180661779 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 253 0 13 chr6 8617775 8617854 -180661700 - L1MC4 LINE L1 -1343 6699 6622 703 325 25 37 chr6 8617928 8618251 -180661303 - L3 LINE CR1 -15 1562 1244 542 221 190 58 chr6 8618507 8618733 -180660821 - L2 LINE L2 0 3313 3058 422 302 17 0 chr6 8618823 8618939 -180660615 - L3 LINE CR1 -420 1157 1040 3509 188 38 17 chr6 8619242 8619892 -180659662 + L1MC3 LINE L1 7058 7726 -59 1962 165 24 126 chr6 8619892 8620353 -180659201 + MLT2D LTR ERVL 1 414 0 3509 188 38 17 chr6 8620353 8620414 -180659140 + L1MC3 LINE L1 7726 7784 -1 243 246 18 0 chr6 8622396 8622453 -180657101 + L2 LINE L2 3214 3271 -1 8343 140 33 121 chr6 8623378 8625334 -180654220 - L1MA6 LINE L1 0 6300 4517 1377 150 17 0 chr6 8625334 8625567 -180653987 + Tigger1 DNA MER2_type 2 238 -2180 8343 140 33 121 chr6 8625567 8626647 -180652907 - L1MA6 LINE L1 -1783 4517 3344 9831 110 23 1 chr6 8626647 8628792 -180650762 - L1PA8A LINE L1 -1 6445 4277 18101 152 7 24 chr6 8628894 8629237 -180650317 - L1PA8A LINE L1 -2108 4353 4006 2354 84 0 16 chr6 8629237 8629545 -180650009 - AluY SINE Alu -4 307 5 18101 152 7 24 chr6 8629545 8630038 -180649516 - L1PA8A LINE L1 -2455 4006 3506 2230 71 7 4 chr6 8630038 8630355 -180649199 + AluY SINE Alu 1 318 0 18101 152 7 24 chr6 8630355 8633883 -180645671 - L1PA8A LINE L1 -2955 3506 2 2719 184 58 11 chr6 8633882 8634534 -180645020 - L1MA6 LINE L1 -2791 3355 2673 * 29 0 0 0 chr6 8634587 8634616 -180644938 + AT_rich Low_complexity Low_complexity 1 29 0 1542 199 3 14 chr6 8634659 8634950 -180644604 + AluJo SINE Alu 1 288 -24 835 233 44 0 chr6 8634973 8635201 -180644353 + L1MD1 LINE L1 5031 5268 -878 912 172 49 0 chr6 8635247 8635413 -180644141 + FRAM SINE Alu 1 163 -13 * 3394 161 58 67 chr6 8635411 8635976 -180643578 + L1MD1 LINE L1 5284 5841 -401 2039 121 9 16 chr6 8635976 8636291 -180643263 + AluSq SINE Alu 1 313 0 3394 161 58 67 chr6 8636291 8636537 -180643017 + L1MD1 LINE L1 5841 6088 -154 371 304 36 53 chr6 8636531 8636778 -180642776 - L1MC/D LINE L1 -2226 5582 5340 * 2160 163 23 3 chr6 8638111 8638460 -180641094 - MLT1A1 LTR MaLR 0 365 10 1977 175 117 51 chr6 8639863 8640315 -180639239 + LTR44 LTR ERV1 1 482 -37 459 0 0 0 chr6 8640316 8640367 -180639187 + (TTCC)n Simple_repeat Simple_repeat 2 52 0 2667 175 119 52 chr6 8640367 8641110 -180638444 - LTR1B LTR ERV1 0 785 2 660 87 0 0 chr6 8641110 8641202 -180638352 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 1551 137 27 89 chr6 8641220 8641513 -180638041 - AluJo SINE Alu -37 275 1 244 171 0 0 chr6 8641513 8641554 -180638000 + LTR44 LTR ERV1 479 519 0 4039 207 118 30 chr6 8642378 8643528 -180636026 - Zaphod DNA AcHobo -3 4028 2741 2275 91 7 7 chr6 8643528 8643825 -180635729 - AluSg SINE Alu -13 297 1 4039 207 118 30 chr6 8643825 8644026 -180635528 - Zaphod DNA AcHobo -1290 2741 2559 1087 283 162 13 chr6 8644039 8644435 -180635119 - Zaphod DNA AcHobo -3475 556 102 2282 74 0 3 chr6 8644436 8644744 -180634810 - AluY SINE Alu 0 307 1 2147 115 3 70 chr6 8644905 8645300 -180634254 - L1PA4 LINE L1 0 6155 5804 222 91 0 0 chr6 8645348 8645381 -180634173 + (TG)n Simple_repeat Simple_repeat 1 33 0 829 224 50 0 chr6 8646110 8646289 -180633265 - MER5A DNA MER1_type 0 189 2 3553 71 9 11 chr6 8646686 8647138 -180632416 + L1PA10 LINE L1 5715 6165 -3 183 80 0 0 chr6 8649655 8649680 -180629874 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 212 180 34 11 chr6 8650090 8650179 -180629375 + (TA)n Simple_repeat Simple_repeat 2 92 0 2481 56 16 0 chr6 8650611 8650916 -180628638 + AluY SINE Alu 1 310 -1 2383 156 150 25 chr6 8651988 8652515 -180627039 - L1MB5 LINE L1 -6 6168 5576 195 296 28 14 chr6 8652664 8652735 -180626819 - MIR SINE MIR -120 142 71 1175 206 0 0 chr6 8653886 8654095 -180625459 - MER3 DNA MER1_type 0 209 1 2173 92 3 36 chr6 8654401 8654705 -180624849 - AluSq SINE Alu -19 294 1 278 370 120 25 chr6 8654713 8655364 -180624190 + L2 LINE L2 1759 2471 -843 516 208 19 0 chr6 8655364 8655470 -180624084 + MER81 DNA DNA 1 108 -6 411 38 0 0 chr6 8656115 8656168 -180623386 + (CA)n Simple_repeat Simple_repeat 2 54 0 518 329 108 30 chr6 8657003 8657511 -180622043 + L2 LINE L2 2032 2579 -735 213 279 279 13 chr6 8657513 8657739 -180621815 + L2 LINE L2 3028 3313 0 356 194 0 0 chr6 8658508 8658575 -180620979 - MIR SINE MIR 0 262 196 464 252 18 0 chr6 8659037 8659148 -180620406 - MIR SINE MIR -97 165 53 875 138 0 38 chr6 8659216 8659375 -180620179 + L1PA16 LINE L1 5913 6065 -101 393 248 67 0 chr6 8659512 8659617 -180619937 + MIR SINE MIR 150 261 -1 2059 125 7 14 chr6 8659663 8659960 -180619594 + AluSx SINE Alu 1 295 -17 399 257 117 35 chr6 8660942 8661113 -180618441 + L1ME4a LINE L1 5933 6117 -4 258 338 156 23 chr6 8661221 8661529 -180618025 + L2 LINE L2 2827 3175 -97 1876 127 167 9 chr6 8663373 8663697 -180615857 + THE1C LTR MaLR 1 375 0 11469 106 7 42 chr6 8663697 8665334 -180614220 + THE1C-int LTR MaLR 1 1580 0 2245 111 72 28 chr6 8665334 8665693 -180613861 + THE1C LTR MaLR 1 375 0 448 341 49 0 chr6 8665846 8666010 -180613544 + MIR SINE MIR 62 233 -29 505 206 89 67 chr6 8666063 8666243 -180613311 + L2 LINE L2 1605 1788 -1526 2781 68 3 3 chr6 8666289 8666628 -180612926 + L1PA6 LINE L1 5815 6153 -1 195 129 0 0 chr6 8666755 8666786 -180612768 + (CA)n Simple_repeat Simple_repeat 1 31 0 1723 271 65 52 chr6 8666987 8667659 -180611895 + L2 LINE L2 1811 2491 -823 954 227 49 0 chr6 8667659 8667862 -180611692 + MLT1F LTR MaLR 1 213 -354 1552 192 67 17 chr6 8667864 8668223 -180611331 - MLT1A2 LTR MaLR 0 374 1 1415 214 107 0 chr6 8668223 8668532 -180611022 + MLT1F LTR MaLR 199 540 -2 1295 261 177 13 chr6 8668534 8669236 -180610318 + L2 LINE L2 2487 3313 0 205 328 9 78 chr6 8669511 8669627 -180609927 + L3 LINE CR1 1431 1538 -39 2080 115 124 18 chr6 8670138 8670477 -180609077 - THE1C LTR MaLR 0 375 1 354 214 0 0 chr6 8671485 8671574 -180607980 + (CA)n Simple_repeat Simple_repeat 2 90 0 233 234 65 13 chr6 8671592 8671669 -180607885 - L2 LINE L2 -1220 2094 2014 1682 167 17 10 chr6 8671725 8672013 -180607541 + AluJo SINE Alu 3 292 -20 438 247 137 22 chr6 8672083 8672265 -180607289 + MER58C DNA MER1_type 1 203 -12 222 293 38 57 chr6 8672420 8672526 -180607028 - MER5B DNA MER1_type -12 166 63 1924 139 0 0 chr6 8672529 8672802 -180606752 - AluSx SINE Alu 0 312 40 219 200 0 0 chr6 8673006 8673046 -180606508 - L2 LINE L2 -10 3303 3264 209 108 27 0 chr6 8673152 8673189 -180606365 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 7189 52 38 0 chr6 8673388 8674609 -180604945 + L1PA6 LINE L1 4869 6154 0 612 257 138 5 chr6 8675516 8675734 -180603820 + MIR SINE MIR 16 262 0 1440 152 41 104 chr6 8676028 8676145 -180603409 + AluJo SINE Alu 1 124 -188 207 0 0 0 chr6 8676145 8676168 -180603386 + (TC)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr6 8676169 8676215 -180603339 + (TA)n Simple_repeat Simple_repeat 2 47 0 1440 152 41 104 chr6 8676215 8676411 -180603143 + AluJo SINE Alu 123 296 -16 2969 199 38 5 chr6 8676437 8677039 -180602515 - L1MB7 LINE L1 -43 6141 5520 265 359 0 0 chr6 8677620 8677712 -180601842 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 251 313 0 26 chr6 8679310 8679425 -180600129 + L1MC5 LINE L1 7806 7917 -44 751 313 100 9 chr6 8679449 8679868 -180599686 + L2 LINE L2 1854 2310 -1004 2005 185 36 46 chr6 8679880 8680433 -180599121 - MLT2A2 LTR ERVL 0 554 1 479 313 171 20 chr6 8680454 8681127 -180598427 + L2 LINE L2 2335 3210 -103 198 176 0 0 chr6 8681211 8681245 -180598309 + MIR SINE MIR 217 250 -12 198 176 0 118 chr6 8681245 8681262 -180598292 + L2 LINE L2 3262 3306 -7 274 143 0 0 chr6 8682828 8682870 -180596684 + MLT1A1 LTR MaLR 2 43 -331 283 174 0 0 chr6 8682871 8682917 -180596637 + MLT1A1 LTR MaLR 158 203 -162 253 150 0 0 chr6 8682916 8682956 -180596598 + MLT1A2 LTR MaLR 166 205 -169 * 918 181 75 5 chr6 8682958 8683146 -180596408 + MLT1A2 LTR MaLR 173 373 -1 308 303 37 0 chr6 8683438 8683547 -180596007 - MIR SINE MIR -17 245 133 231 288 68 14 chr6 8683591 8683664 -180595890 - MIR SINE MIR -84 124 48 511 308 80 83 chr6 8684420 8684781 -180594773 - L2 LINE L2 -40 3232 2873 858 320 76 15 chr6 8684916 8685310 -180594244 - L2 LINE L2 -649 2665 2248 185 279 77 48 chr6 8685842 8685946 -180593608 - L2 LINE L2 -40 3273 3167 2161 127 0 13 chr6 8686291 8686607 -180592947 + AluSx SINE Alu 1 312 0 2157 83 42 10 chr6 8687230 8687518 -180592036 + AluSx SINE Alu 1 297 -15 282 29 0 0 chr6 8688208 8688243 -180591311 + (TG)n Simple_repeat Simple_repeat 2 36 0 35 24 0 0 chr6 8688372 8688414 -180591140 + AT_rich Low_complexity Low_complexity 1 42 0 2091 136 0 16 chr6 8688487 8688803 -180590751 + AluJb SINE Alu 1 311 -1 21 0 0 0 chr6 8689212 8689233 -180590321 + AT_rich Low_complexity Low_complexity 1 21 0 251 320 40 0 chr6 8689688 8689763 -180589791 + L2 LINE L2 3150 3227 -45 290 262 95 32 chr6 8690008 8690134 -180589420 + MER63A DNA MER1_type 69 202 -8 251 203 257 0 chr6 8691063 8691137 -180588417 + MER63 DNA MER1_type 1 719 -117 1148 171 38 79 chr6 8691137 8691453 -180588101 - MER58B DNA MER1_type 0 341 39 265 266 46 15 chr6 8691454 8691580 -180587974 + MER63 DNA MER1_type 695 1052 -8 2312 205 31 98 chr6 8691764 8692502 -180587052 - LTR8 LTR ERV1 -2 689 1 314 214 0 67 chr6 8692731 8692820 -180586734 - MER94 DNA DNA -40 94 12 367 202 32 11 chr6 8693466 8693560 -180585994 + MER103 DNA DNA 68 163 -3 1728 178 3 28 chr6 8693754 8694074 -180585480 - AluJb SINE Alu 0 312 1 388 312 159 6 chr6 8694898 8695055 -180584499 + MER5A DNA MER1_type 9 189 0 193 304 145 0 chr6 8695077 8695146 -180584408 + MIR SINE MIR 119 197 -65 1666 161 25 6 chr6 8695302 8695626 -180583928 + MLT1B LTR MaLR 1 330 -60 948 229 78 0 chr6 8695666 8695911 -180583643 + Tigger7 DNA MER2_type 1 264 -469 435 248 10 0 chr6 8695906 8696007 -180583547 + Tigger7 DNA MER2_type 2386 2487 0 * 187 235 41 85 chr6 8696520 8696625 -180582929 - MIR SINE MIR -66 196 118 1183 126 9 19 chr6 8696625 8696839 -180582715 + L1MA8 LINE L1 6076 6287 -4 187 235 41 85 chr6 8696839 8696885 -180582669 - MIR SINE MIR -144 118 71 1926 137 17 10 chr6 8699403 8699695 -180579859 + AluSx SINE Alu 1 294 -18 1091 191 70 101 chr6 8700081 8700479 -180579075 - MLT1B LTR MaLR 0 390 5 414 302 99 26 chr6 8700864 8701056 -180578498 + MIR3 SINE MIR 2 207 -1 349 322 16 71 chr6 8702497 8702680 -180576874 + MER5A DNA MER1_type 17 189 0 3070 211 49 54 chr6 8702734 8704596 -180574958 + L1ME1 LINE L1 4307 6161 -5 233 303 132 0 chr6 8705396 8705472 -180574082 - MIR SINE MIR -90 118 33 2652 119 5 121 chr6 8705939 8706023 -180573531 + MER84 LTR ERVI 1 93 -414 2298 184 44 75 chr6 8706023 8706654 -180572900 - LTR9 LTR ERV1 0 612 1 2652 119 5 121 chr6 8706654 8707141 -180572413 + MER84 LTR ERVI 93 506 -1 221 319 180 50 chr6 8707166 8707671 -180571883 + L2 LINE L2 2214 2784 -530 1190 184 104 43 chr6 8708227 8708601 -180570953 - L1MC2 LINE L1 0 6344 5948 1906 132 0 35 chr6 8708601 8708889 -180570665 - AluSx SINE Alu -11 301 24 333 295 62 62 chr6 8710876 8711103 -180568451 - L1ME3A LINE L1 -2 6164 5938 886 254 102 19 chr6 8711144 8711842 -180567712 - L1ME3A LINE L1 -218 5946 5152 * 1741 161 28 43 chr6 8711830 8712252 -180567302 - L1MD3 LINE L1 0 7995 7580 1101 285 85 34 chr6 8712447 8712954 -180566600 - L1ME3A LINE L1 -1225 4921 4350 2274 110 0 0 chr6 8712954 8713253 -180566301 - AluSx SINE Alu -13 299 1 1101 285 85 34 chr6 8713253 8713619 -180565935 - L1ME3A LINE L1 -1796 4350 4004 462 282 76 15 chr6 8713625 8713888 -180565666 - L1ME3A LINE L1 -2677 3469 3173 1731 174 3 40 chr6 8713888 8714209 -180565345 - AluJo SINE Alu -3 309 1 462 282 76 15 chr6 8714209 8714338 -180565216 - L1ME3A LINE L1 -2973 3173 3053 269 258 222 24 chr6 8714361 8714528 -180565026 - MIR SINE MIR -43 219 20 386 330 164 30 chr6 8714740 8715315 -180564239 + L2 LINE L2 1979 2630 -684 237 289 26 0 chr6 8715946 8716022 -180563532 - MIR SINE MIR -88 174 97 2031 152 11 19 chr6 8716234 8716602 -180562952 - MER47A DNA MER2_type -1 365 1 253 260 80 20 chr6 8717270 8717370 -180562184 + MIR SINE MIR 37 142 -66 255 140 0 0 chr6 8717999 8718049 -180561505 + (GA)n Simple_repeat Simple_repeat 1 50 0 421 288 77 56 chr6 8718311 8718648 -180560906 + L1MEd LINE L1 811 1154 -4965 472 265 114 30 chr6 8720181 8720347 -180559207 + MER5A DNA MER1_type 9 188 -1 322 316 120 8 chr6 8720417 8720534 -180559020 + L2 LINE L2 3143 3272 0 546 229 50 69 chr6 8720883 8721101 -180558453 + MER21B LTR ERV1 183 396 -467 601 165 106 41 chr6 8721397 8721422 -180558132 - Ricksha DNA DNA -2880 366 344 2770 72 59 56 chr6 8721422 8721461 -180558093 - MLT2A1 LTR ERVL 0 444 407 745 62 39 0 chr6 8721461 8721590 -180557964 + (TA)n Simple_repeat Simple_repeat 2 135 0 2770 72 59 56 chr6 8721590 8721993 -180557561 - MLT2A1 LTR ERVL -37 407 1 31120 59 12 3 chr6 8721993 8727551 -180552003 - HERVL-A1 LTR ERVL 0 5654 1 601 165 106 41 chr6 8721993 8722137 -180557417 - Ricksha DNA DNA -2902 344 186 * 2580 75 35 132 chr6 8727551 8728043 -180551511 - MLT2A1 LTR ERVL 0 444 1 1138 274 86 61 chr6 8728044 8728669 -180550885 - MER21B LTR ERV1 -193 670 30 198 0 0 0 chr6 8728788 8728810 -180550744 + (TTG)n Simple_repeat Simple_repeat 1 22 0 969 180 38 38 chr6 8729084 8729345 -180550209 - MLT1A1 LTR MaLR 0 365 105 1725 169 77 6 chr6 8730119 8730457 -180549097 + MLT1A1 LTR MaLR 3 364 -1 30 0 0 0 chr6 8730562 8730592 -180548962 + AT_rich Low_complexity Low_complexity 1 30 0 2166 148 3 26 chr6 8730770 8731115 -180548439 - MER1B DNA MER1_type 0 337 1 23 0 0 0 chr6 8732930 8732953 -180546601 + AT_rich Low_complexity Low_complexity 1 23 0 292 213 47 147 chr6 8733190 8733401 -180546153 - L2 LINE L2 -2 3311 3122 232 253 218 59 chr6 8733638 8733840 -180545714 + L2 LINE L2 3039 3272 0 283 250 53 0 chr6 8733937 8734013 -180545541 + MLT1J LTR MaLR 106 185 -326 691 201 107 0 chr6 8734149 8734318 -180545236 + MIR SINE MIR 2 188 -74 213 296 157 17 chr6 8734480 8734595 -180544959 + L2 LINE L2 3137 3267 -5 21 89 0 0 chr6 8735988 8736044 -180543510 + AT_rich Low_complexity Low_complexity 1 56 0 207 0 0 0 chr6 8736131 8736154 -180543400 + (CAG)n Simple_repeat Simple_repeat 1 23 0 618 301 53 22 chr6 8736166 8736392 -180543162 - MIR SINE MIR -27 235 3 258 32 0 0 chr6 8736625 8736656 -180542898 + (CA)n Simple_repeat Simple_repeat 2 32 0 346 256 75 25 chr6 8736794 8736993 -180542561 + L1M4 LINE L1 4414 4622 -1524 358 274 201 11 chr6 8737262 8737536 -180542018 + L1M4 LINE L1 4977 5302 -844 29 47 0 0 chr6 8739439 8739482 -180540072 + AT_rich Low_complexity Low_complexity 1 43 0 2140 114 0 0 chr6 8740147 8740457 -180539097 - AluSg SINE Alu 0 310 1 1075 170 0 0 chr6 8741139 8741310 -180538244 - AluSg/x SINE Alu -9 303 133 2311 73 3 27 chr6 8742414 8742714 -180536840 - AluSq SINE Alu -20 293 1 22 0 0 0 chr6 8743243 8743265 -180536289 + AT_rich Low_complexity Low_complexity 1 22 0 269 306 0 0 chr6 8743535 8743607 -180535947 + MIR3 SINE MIR 85 156 -52 1120 160 5 5 chr6 8744300 8744494 -180535060 - MER46B DNA MER2_type 0 236 43 2470 93 8 8 chr6 8744494 8744847 -180534707 + THE1A LTR MaLR 1 353 -2 4951 115 24 0 chr6 8744850 8745569 -180533985 + THE1A-int LTR MaLR 1 736 -844 560 158 185 7 chr6 8745586 8745732 -180533822 - MER46B DNA MER2_type -189 47 1 29 60 0 0 chr6 8747022 8747072 -180532482 + AT_rich Low_complexity Low_complexity 1 50 0 1939 152 30 0 chr6 8748752 8748872 -180530682 + AluJo SINE Alu 1 116 -196 252 0 0 0 chr6 8748872 8748900 -180530654 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 1939 152 30 0 chr6 8748900 8749081 -180530473 + AluJo SINE Alu 116 311 -1 584 270 110 30 chr6 8750665 8750902 -180528652 + MIR SINE MIR 2 257 -5 648 270 128 47 chr6 8750999 8751343 -180528211 + L2 LINE L2 2244 2615 -699 29 0 0 0 chr6 8752184 8752213 -180527341 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr6 8752317 8752338 -180527216 + AT_rich Low_complexity Low_complexity 1 21 0 207 200 20 0 chr6 8753564 8753614 -180525940 + CT-rich Low_complexity Low_complexity 2 52 0 579 302 156 21 chr6 8755029 8755450 -180524104 + L2 LINE L2 2581 3070 -243 2150 107 4 0 chr6 8755632 8755913 -180523641 - AluSx SINE Alu -28 284 3 561 339 103 21 chr6 8756141 8756480 -180523074 + LTR16C LTR ERVL 123 489 -2 1078 113 17 0 chr6 8756861 8757038 -180522516 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 585 188 22 28 chr6 8757055 8757236 -180522318 + CT-rich Low_complexity Low_complexity 1 180 0 1814 135 57 7 chr6 8757236 8757518 -180522036 - AluSx SINE Alu -16 296 1 483 303 7 7 chr6 8757538 8757680 -180521874 + HERVL LTR ERVL 4471 4612 -1042 396 0 0 0 chr6 8757741 8757785 -180521769 + (CA)n Simple_repeat Simple_repeat 2 45 0 508 279 7 0 chr6 8757948 8758084 -180521470 - L2 LINE L2 -1208 2106 1970 700 313 36 24 chr6 8758134 8758383 -180521171 + MIR SINE MIR 9 260 -2 501 293 54 20 chr6 8758570 8758717 -180520837 - L2 LINE L2 -4 3268 3117 1508 172 19 14 chr6 8759157 8759239 -180520315 - MER33 DNA MER1_type -2261 324 244 2243 99 0 7 chr6 8759239 8759541 -180520013 + AluSx SINE Alu 1 300 -12 1508 172 19 14 chr6 8759541 8759793 -180519761 - MER33 DNA MER1_type -2341 244 1 1795 157 0 63 chr6 8759849 8760181 -180519373 + AluJb SINE Alu 1 311 -1 1854 128 75 12 chr6 8761041 8761376 -180518178 - MER46B DNA MER2_type -1 235 5 631 157 26 9 chr6 8761418 8761533 -180518021 - MLT1D LTR MaLR 0 505 389 527 216 0 0 chr6 8761534 8761636 -180517918 + FLAM_C SINE Alu 5 106 -37 206 31 0 31 chr6 8761661 8761693 -180517861 + (CATA)n Simple_repeat Simple_repeat 2 32 0 1043 206 58 51 chr6 8761693 8761743 -180517811 - MLT1D LTR MaLR -102 403 355 4265 108 15 11 chr6 8761743 8762353 -180517201 - LTR9 LTR ERV1 0 612 1 1043 206 58 51 chr6 8762353 8762578 -180516976 - MLT1D LTR MaLR -150 355 126 4907 57 2 0 chr6 8762581 8763191 -180516363 - L1PA6 LINE L1 0 6154 5544 8064 69 3 2 chr6 8763191 8764255 -180515299 - L1PA6 LINE L1 -3382 2764 1700 4584 97 14 6 chr6 8764263 8764921 -180514633 - PABL_B LTR ERV1 0 667 5 332 307 104 43 chr6 8764974 8765137 -180514417 - LTR16C LTR ERVL -223 268 96 2102 254 11 20 chr6 8765147 8765381 -180514173 - MER90 LTR ERV1 -25 550 315 2290 96 3 3 chr6 8765381 8765684 -180513870 - AluSg SINE Alu -7 303 1 2102 254 11 20 chr6 8765684 8766004 -180513550 - MER90 LTR ERV1 -260 315 1 1955 229 44 44 chr6 8766153 8766673 -180512881 - MLT1E3 LTR MaLR 0 624 105 1872 196 35 84 chr6 8766707 8766986 -180512568 - L1ME1 LINE L1 -306 5860 5622 2337 87 6 6 chr6 8766986 8767297 -180512257 + AluSq SINE Alu 1 311 -2 1872 196 35 84 chr6 8767297 8767588 -180511966 - L1ME1 LINE L1 -544 5622 5318 509 208 0 0 chr6 8767640 8767760 -180511794 - L1MA9 LINE L1 -33 6279 6160 * 1025 202 42 21 chr6 8767753 8767961 -180511593 - L1ME1 LINE L1 -844 5302 5083 507 113 0 0 chr6 8767961 8768041 -180511513 + MADE1 DNA Mariner 1 80 0 1025 202 42 21 chr6 8768041 8768164 -180511390 - L1ME1 LINE L1 -1063 5083 4964 370 245 29 22 chr6 8768160 8768299 -180511255 - L1M1 LINE L1 -4640 2925 2786 * 32 81 0 0 chr6 8768827 8768901 -180510653 + AT_rich Low_complexity Low_complexity 1 74 0 30 59 0 0 chr6 8769062 8769113 -180510441 + AT_rich Low_complexity Low_complexity 1 51 0 216 158 0 0 chr6 8770079 8770117 -180509437 + (TATG)n Simple_repeat Simple_repeat 1 38 0 186 43 0 0 chr6 8770117 8770140 -180509414 + (CA)n Simple_repeat Simple_repeat 1 23 0 2169 123 3 0 chr6 8770725 8771026 -180508528 - AluSx SINE Alu -6 306 5 200 407 0 0 chr6 8771899 8771980 -180507574 + MIR SINE MIR 16 96 -112 265 296 209 26 chr6 8772135 8772250 -180507304 + L2 LINE L2 3137 3272 0 26 0 0 0 chr6 8772743 8772769 -180506785 + AT_rich Low_complexity Low_complexity 1 26 0 409 302 259 31 chr6 8773651 8774002 -180505552 + L3 LINE CR1 1132 1562 -15 439 77 0 0 chr6 8774359 8774424 -180505130 - L1PA16 LINE L1 -4 7600 7536 14018 214 28 27 chr6 8774425 8776698 -180502856 - L1PA16 LINE L1 -105 7499 5231 2035 136 0 3 chr6 8776698 8776992 -180502562 - AluSx SINE Alu -17 295 3 14018 214 28 27 chr6 8776992 8777805 -180501749 - L1PA16 LINE L1 -2373 5231 4421 1920 159 0 0 chr6 8777805 8778113 -180501441 - AluSx SINE Alu -4 308 1 14018 214 28 27 chr6 8778113 8779315 -180500239 - L1PA16 LINE L1 -3183 4421 3198 2048 154 0 0 chr6 8779315 8779620 -180499934 - AluSx SINE Alu -7 305 1 14018 214 28 27 chr6 8779620 8780617 -180498937 - L1PA16 LINE L1 -4406 3198 2204 27 62 0 0 chr6 8781593 8781641 -180497913 + AT_rich Low_complexity Low_complexity 1 48 0 2080 152 82 14 chr6 8781695 8782058 -180497496 - L1MC2 LINE L1 -170 6174 5778 204 40 0 0 chr6 8782058 8782083 -180497471 + (GCATG)n Simple_repeat Simple_repeat 5 29 0 2080 152 82 14 chr6 8782083 8782133 -180497421 - L1MC2 LINE L1 -566 5778 5733 28 48 0 0 chr6 8782326 8782368 -180497186 + AT_rich Low_complexity Low_complexity 1 42 0 1568 206 21 45 chr6 8782521 8782895 -180496659 + MLT1A1 LTR MaLR 1 365 0 198 0 0 0 chr6 8782939 8782961 -180496593 + (A)n Simple_repeat Simple_repeat 1 22 0 995 328 22 9 chr6 8782961 8783278 -180496276 - L3 LINE CR1 -25 1552 1232 500 263 8 8 chr6 8783398 8783516 -180496038 - L2 LINE L2 0 3272 3155 215 433 0 0 chr6 8783572 8783706 -180495848 - L2 LINE L2 -335 2978 2845 371 123 37 49 chr6 8783721 8783802 -180495752 + L1MA5A LINE L1 6218 6297 0 1962 232 88 17 chr6 8783808 8784330 -180495224 + MLT1F1 LTR MaLR 9 567 0 483 265 123 0 chr6 8784338 8784508 -180495046 - MLT1L LTR MaLR -1 614 424 1119 275 109 73 chr6 8784693 8784899 -180494655 - L2 LINE L2 -791 2523 2326 2103 98 11 21 chr6 8784899 8785186 -180494368 - AluSq SINE Alu -27 286 3 1119 275 109 73 chr6 8785186 8785884 -180493670 - L2 LINE L2 -988 2326 1586 660 272 94 22 chr6 8785998 8786222 -180493332 + MIR SINE MIR 2 241 -21 274 346 52 52 chr6 8789596 8789732 -180489822 - L2 LINE L2 -19 3253 3118 420 277 42 43 chr6 8789812 8790025 -180489529 - MIR SINE MIR -12 250 33 344 138 15 0 chr6 8790315 8790380 -180489174 + (CA)n Simple_repeat Simple_repeat 2 67 0 1642 135 97 4 chr6 8790734 8791026 -180488528 - AluSx SINE Alu 0 316 1 1193 279 59 20 chr6 8791072 8791563 -180487991 - L1ME3A LINE L1 -280 5890 5381 183 42 0 0 chr6 8791663 8791687 -180487867 + (TTG)n Simple_repeat Simple_repeat 2 25 0 985 185 6 0 chr6 8791689 8791851 -180487703 - AluJb SINE Alu -15 297 135 1997 127 14 46 chr6 8791863 8792210 -180487344 - THE1C LTR MaLR -39 336 1 805 156 0 0 chr6 8792230 8792352 -180487202 - AluJb SINE Alu -190 122 1 1319 289 90 48 chr6 8792355 8793783 -180485771 - L1ME3A LINE L1 -865 5281 3794 1177 195 71 68 chr6 8793772 8793896 -180485658 - L1M4 LINE L1 -895 5645 5523 * 1609 157 38 11 chr6 8793896 8794183 -180485371 - AluSx SINE Alu -17 295 1 1177 195 71 68 chr6 8794183 8794483 -180485071 - L1M4 LINE L1 -1017 5523 5220 1299 276 126 31 chr6 8794597 8795141 -180484413 - MER77 LTR ERV1 -4 601 54 559 233 105 9 chr6 8795247 8795475 -180484079 - L1MEc LINE L1 -2591 3949 3700 2486 243 50 95 chr6 8795482 8795717 -180483837 - L1MEc LINE L1 -2994 3546 3302 1784 151 3 20 chr6 8795717 8796009 -180483545 + AluJb SINE Alu 5 291 -21 2486 243 50 95 chr6 8796009 8797196 -180482358 - L1MEc LINE L1 -3238 3302 2063 1853 102 14 0 chr6 8797196 8797471 -180482083 - L1MA3 LINE L1 0 6305 6027 2486 243 50 95 chr6 8797471 8797528 -180482026 - L1MEc LINE L1 -4477 2063 2005 2017 131 0 0 chr6 8797528 8797826 -180481728 + AluSp SINE Alu 1 298 -15 2486 243 50 95 chr6 8797826 8798903 -180480651 - L1MEc LINE L1 -4535 2005 1137 25 31 0 0 chr6 8798921 8798953 -180480601 + AT_rich Low_complexity Low_complexity 1 32 0 1968 248 72 22 chr6 8799095 8799647 -180479907 - L1MEc LINE L1 -5934 606 27 1336 286 54 20 chr6 8799656 8800393 -180479161 - L1MEc LINE L1 -5571 825 34 549 313 62 62 chr6 8800393 8800491 -180479063 - L1MDa LINE L1 -4455 1674 1577 411 56 0 0 chr6 8800491 8800545 -180479009 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 549 313 62 62 chr6 8800545 8800916 -180478638 - L1MDa LINE L1 -4551 1578 1205 551 276 21 72 chr6 8800926 8801314 -180478240 - L1MDa LINE L1 -4908 1211 844 5681 207 47 33 chr6 8803260 8805671 -180473883 + L1MB7 LINE L1 3730 6168 -16 21 71 0 0 chr6 8805988 8806030 -180473524 + AT_rich Low_complexity Low_complexity 1 42 0 2224 102 0 37 chr6 8807091 8807415 -180472139 + AluSx SINE Alu 1 312 0 306 310 17 9 chr6 8807552 8807668 -180471886 + MIR SINE MIR 140 256 -6 4933 54 6 2 chr6 8807680 8808310 -180471244 - L1P LINE L1 -1715 4431 3799 886 60 8 45 chr6 8808262 8808395 -180471159 + L1PA4 LINE L1 6027 6154 -1 * 537 299 50 85 chr6 8808447 8808633 -180470921 - MLT1J LTR MaLR -52 459 291 2131 116 0 0 chr6 8808633 8808925 -180470629 + AluSx SINE Alu 6 297 -15 537 299 50 85 chr6 8808925 8809102 -180470452 - MLT1J LTR MaLR -220 291 109 23 54 0 0 chr6 8809267 8809304 -180470250 + AT_rich Low_complexity Low_complexity 1 37 0 325 350 88 26 chr6 8809364 8809670 -180469884 + L1M4 LINE L1 3584 3908 -2238 244 309 90 50 chr6 8810101 8810667 -180468887 + L1M4 LINE L1 4488 5076 -1070 322 288 73 14 chr6 8810763 8810903 -180468651 + MER20 DNA MER1_type 46 195 -24 643 219 71 129 chr6 8811681 8811943 -180467611 - MLT1L LTR MaLR -27 588 236 237 276 14 7 chr6 8812010 8812093 -180467461 + GA-rich Low_complexity Low_complexity 1 146 0 375 227 277 7 chr6 8812106 8812247 -180467307 - MER5A DNA MER1_type -2 187 9 471 244 70 70 chr6 8813165 8813337 -180466217 + MER91B DNA MER1_type 11 182 -8 514 133 14 147 chr6 8813724 8813867 -180465687 + LOR1-int LTR ERV1 6830 6953 -1167 207 0 0 0 chr6 8813880 8813903 -180465651 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 6678 110 20 3 chr6 8813908 8815685 -180463869 - L1PA8 LINE L1 -15 6157 4349 1981 113 3 0 chr6 8815699 8815983 -180463571 + L1P LINE L1 4707 4991 -1155 5025 104 1 1 chr6 8815991 8816702 -180462852 - L1PA8 LINE L1 -1800 4346 3636 1967 147 20 11 chr6 8816702 8817050 -180462504 + MER72 LTR ERV1 344 694 -28 22 0 0 0 chr6 8817050 8817072 -180462482 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr6 8817081 8817102 -180462452 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr6 8818320 8818341 -180461213 + AT_rich Low_complexity Low_complexity 1 21 0 2081 123 3 19 chr6 8818973 8819281 -180460273 + AluSx SINE Alu 1 303 -9 1257 316 89 12 chr6 8819349 8819833 -180459721 + MLT1G1 LTR MaLR 75 595 0 935 220 16 0 chr6 8820453 8820639 -180458915 - MER5A DNA MER1_type 0 189 1 253 286 18 0 chr6 8820748 8820804 -180458750 - L2 LINE L2 -11 3261 3205 21 36 0 0 chr6 8822267 8822295 -180457259 + AT_rich Low_complexity Low_complexity 1 28 0 324 70 0 0 chr6 8822620 8822663 -180456891 + (TG)n Simple_repeat Simple_repeat 1 43 0 506 280 21 38 chr6 8824058 8824244 -180455310 + MIR SINE MIR 60 242 -20 2057 143 125 13 chr6 8825133 8825518 -180454036 + MSTA LTR MaLR 1 428 0 365 22 0 0 chr6 8825627 8825673 -180453881 - MADE1 DNA Mariner -1 79 34 22 0 0 0 chr6 8826271 8826293 -180453261 + AT_rich Low_complexity Low_complexity 1 22 0 652 216 242 5 chr6 8826304 8826498 -180453056 + MIR SINE MIR 2 241 -21 192 179 0 0 chr6 8826959 8826998 -180452556 + (CAA)n Simple_repeat Simple_repeat 1 39 0 783 298 129 51 chr6 8827526 8828077 -180451477 - L1ME4a LINE L1 -48 6073 5480 612 336 14 14 chr6 8828108 8828316 -180451238 + MIR SINE MIR 55 262 0 253 263 66 13 chr6 8828338 8828414 -180451140 - L1ME4a LINE L1 -659 5462 5383 2256 101 0 0 chr6 8828437 8828734 -180450820 - AluSg SINE Alu -13 297 1 395 310 91 5 chr6 8828786 8828973 -180450581 + LTR16A LTR ERVL 1 203 -247 1723 172 8 87 chr6 8828974 8829352 -180450202 - MER7A DNA MER2_type 0 346 1 383 253 120 90 chr6 8829352 8829584 -180449970 + LTR16A LTR ERVL 203 441 -9 252 226 12 24 chr6 8829747 8829831 -180449723 - L1MB8 LINE L1 -37 6141 6059 22 35 0 0 chr6 8830261 8830290 -180449264 + AT_rich Low_complexity Low_complexity 1 29 0 620 165 132 8 chr6 8830297 8830418 -180449136 + FRAM SINE Alu 23 158 -18 2123 125 0 7 chr6 8830711 8831016 -180448538 + AluSx SINE Alu 1 303 -9 255 215 13 25 chr6 8831021 8831100 -180448454 + L1MB8 LINE L1 6059 6136 -42 23 33 0 0 chr6 8831250 8831280 -180448274 + AT_rich Low_complexity Low_complexity 1 30 0 657 181 9 0 chr6 8832055 8832171 -180447383 + FLAM_C SINE Alu 1 117 -16 24 32 0 0 chr6 8832347 8832378 -180447176 + AT_rich Low_complexity Low_complexity 1 31 0 223 290 43 0 chr6 8834461 8834530 -180445024 - MIR SINE MIR -13 249 178 303 250 0 0 chr6 8834639 8834711 -180444843 + L1ME1 LINE L1 28 99 -6297 234 0 0 0 chr6 8834722 8834748 -180444806 + (A)n Simple_repeat Simple_repeat 1 26 0 4604 271 72 17 chr6 8834750 8837587 -180441967 + L1ME1 LINE L1 1308 4277 -1938 2373 226 104 43 chr6 8837592 8838815 -180440739 + L1ME1 LINE L1 4772 6099 -136 2203 86 0 7 chr6 8838815 8839095 -180440459 + AluSc SINE Alu 1 278 -31 253 0 0 0 chr6 8839095 8839123 -180440431 + (CAAA)n Simple_repeat Simple_repeat 1 156 0 2373 226 104 43 chr6 8839123 8839264 -180440290 + L1ME1 LINE L1 6099 6230 -5 1186 110 0 0 chr6 8839411 8839584 -180439970 + L1PA8A LINE L1 3764 3936 -2210 307 107 0 0 chr6 8839581 8839637 -180439917 + L1 LINE L1 4794 4849 -1297 * 3116 103 9 0 chr6 8839643 8840098 -180439456 + L1PA8A LINE L1 4143 4601 -1545 5879 91 16 17 chr6 8840099 8841534 -180438020 + L1PA8A LINE L1 4690 6128 -3 34 0 0 0 chr6 8841534 8841568 -180437986 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr6 8841723 8841745 -180437809 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr6 8841882 8841903 -180437651 + (T)n Simple_repeat Simple_repeat 1 21 0 247 268 24 24 chr6 8842507 8842606 -180436948 - MER5A DNA MER1_type -87 102 4 817 269 197 14 chr6 8842700 8843132 -180436422 - MLT1J LTR MaLR 0 511 1 265 311 78 11 chr6 8843185 8843275 -180436279 + MIR3 SINE MIR 63 158 -50 22 0 0 0 chr6 8844358 8844380 -180435174 + AT_rich Low_complexity Low_complexity 1 22 0 991 238 135 82 chr6 8844519 8845247 -180434307 - LTR41 LTR ERVL -7 766 1 249 327 58 29 chr6 8845473 8845577 -180433977 - MIR3 SINE MIR -36 172 66 696 273 98 35 chr6 8845584 8845870 -180433684 - L2 LINE L2 -4 3309 3006 354 123 0 0 chr6 8849365 8849422 -180430132 + (TG)n Simple_repeat Simple_repeat 1 57 0 8762 129 21 9 chr6 8849870 8851241 -180428313 + Tigger1 DNA MER2_type 31 1417 -1001 2418 151 47 7 chr6 8851238 8851662 -180427892 + Tigger1 DNA MER2_type 1977 2417 -1 * 215 286 39 39 chr6 8852275 8852352 -180427202 + MIR SINE MIR 2 78 -184 342 315 142 6 chr6 8852496 8852658 -180426896 + MLT1J2 LTR MaLR 124 307 -143 451 317 116 9 chr6 8853120 8853344 -180426210 - MIR SINE MIR -7 255 8 744 305 141 14 chr6 8854096 8854569 -180424985 - L2 LINE L2 -4 3309 2768 257 325 60 0 chr6 8854583 8854700 -180424854 - MIR SINE MIR -65 197 74 546 314 50 0 chr6 8854853 8855012 -180424542 - MIR SINE MIR -73 189 23 1994 142 3 7 chr6 8855158 8855454 -180424100 - AluSx SINE Alu -15 297 3 429 264 82 43 chr6 8855874 8856041 -180423513 - L1MEd LINE L1 -4880 1239 1055 1839 159 0 26 chr6 8856041 8856349 -180423205 - AluJo SINE Alu -12 300 1 429 264 82 43 chr6 8856349 8856461 -180423093 - L1MEd LINE L1 -5064 1055 949 1010 223 26 108 chr6 8856477 8856685 -180422869 - L1ME2 LINE L1 -8 6156 5997 2593 43 3 0 chr6 8856685 8856986 -180422568 + AluY SINE Alu 1 302 -9 1010 223 26 108 chr6 8856986 8857195 -180422359 - L1ME2 LINE L1 -167 5997 5773 877 299 121 16 chr6 8858422 8858860 -180420694 + L1ME LINE L1 740 1223 -5200 630 234 100 65 chr6 8858885 8859432 -180420122 + L1ME LINE L1 1291 1833 -4887 1586 238 26 40 chr6 8859459 8860185 -180419369 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 8860185 8860214 -180419340 + (CA)n Simple_repeat Simple_repeat 2 30 0 1586 238 26 40 chr6 8860214 8860325 -180419229 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 8860418 8860461 -180419093 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr6 8860677 8860702 -180418852 + AT_rich Low_complexity Low_complexity 1 25 0 4374 186 25 31 chr6 8860836 8861682 -180417872 - MER21B LTR ERV1 -22 841 1 268 298 35 94 chr6 8863999 8864170 -180415384 + L2 LINE L2 2953 3113 -159 2109 112 0 0 chr6 8864216 8864503 -180415051 + AluSg SINE Alu 21 307 -3 36 40 0 0 chr6 8864582 8864632 -180414922 + AT_rich Low_complexity Low_complexity 1 50 0 2042 128 0 28 chr6 8865216 8865537 -180414017 - AluJb SINE Alu 0 312 1 24 0 0 0 chr6 8866974 8866998 -180412556 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr6 8867801 8867831 -180411723 + (CA)n Simple_repeat Simple_repeat 2 31 0 201 219 0 0 chr6 8868156 8868197 -180411357 - L2 LINE L2 -1 3312 3272 280 381 60 16 chr6 8868349 8868598 -180410956 - L2 LINE L2 -243 3070 2811 555 293 55 30 chr6 8868794 8869122 -180410432 - L1ME4a LINE L1 -263 5858 5523 199 375 26 40 chr6 8871024 8871176 -180408378 + L2 LINE L2 2608 2757 -557 266 289 67 0 chr6 8871932 8872036 -180407518 - MIR SINE MIR -31 231 121 592 285 131 9 chr6 8873494 8873708 -180405846 - MIR SINE MIR -1 261 22 22 0 0 0 chr6 8875099 8875121 -180404433 + AT_rich Low_complexity Low_complexity 1 22 0 263 276 99 26 chr6 8875288 8875482 -180404072 - MIR SINE MIR -41 221 20 378 257 44 26 chr6 8876128 8876241 -180403313 + MIR SINE MIR 81 195 -67 500 308 114 17 chr6 8877344 8877782 -180401772 - LTR33 LTR ERVL -1 520 17 * 616 333 68 30 chr6 8877767 8878133 -180401421 - MLT1I LTR MaLR -28 381 2 2154 110 30 0 chr6 8878288 8878588 -180400966 - AluSx SINE Alu -3 309 1 676 308 164 28 chr6 8879393 8879789 -180399765 + LTR16C LTR ERVL 42 491 0 222 233 0 0 chr6 8880124 8880167 -180399387 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 2056 132 49 37 chr6 8880706 8881116 -180398438 + L1MA4 LINE L1 5886 6300 0 496 320 128 5 chr6 8881765 8881968 -180397586 - MLT1J1 LTR MaLR -4 442 215 1025 342 76 35 chr6 8881973 8882579 -180396975 + L2 LINE L2 2141 2771 -543 459 229 65 65 chr6 8882566 8882767 -180396787 + L2 LINE L2 3113 3313 0 * 243 0 0 0 chr6 8883523 8883550 -180396004 + (TG)n Simple_repeat Simple_repeat 1 27 0 408 238 144 50 chr6 8883553 8883713 -180395841 + MER91B DNA MER1_type 6 180 -10 180 111 0 0 chr6 8884671 8884698 -180394856 + (T)n Simple_repeat Simple_repeat 1 27 0 7900 11 1 0 chr6 8884718 8886327 -180393227 - L1PA2 LINE L1 0 6155 4546 427 276 82 102 chr6 8886428 8886553 -180393001 - L2 LINE L2 -34 3238 3112 2357 97 0 0 chr6 8886553 8886852 -180392702 - AluSx SINE Alu -13 299 1 427 276 82 102 chr6 8886852 8887030 -180392524 - L2 LINE L2 -160 3112 2941 32 0 0 0 chr6 8887049 8887081 -180392473 + AT_rich Low_complexity Low_complexity 1 32 0 2901 126 0 0 chr6 8887081 8887510 -180392044 - L1PA15 LINE L1 -10 6155 5727 2208 120 0 0 chr6 8887510 8887811 -180391743 - AluSc SINE Alu -8 301 1 211 346 95 35 chr6 8887907 8888222 -180391332 - L2 LINE L2 -452 2862 2529 386 325 90 5 chr6 8890464 8890652 -180388902 + MIR SINE MIR 21 224 -38 23 0 0 0 chr6 8890658 8890681 -180388873 + AT_rich Low_complexity Low_complexity 1 23 0 324 194 153 51 chr6 8891663 8891761 -180387793 - MIR3 SINE MIR -18 190 83 1627 74 12 19 chr6 8892280 8892536 -180387018 - MER11A LTR ERVK 0 1266 1013 687 151 7 20 chr6 8893019 8893171 -180386383 + CT-rich Low_complexity Low_complexity 2 151 0 1771 144 102 18 chr6 8893624 8893958 -180385596 - MLT1A1 LTR MaLR 0 365 4 1615 204 0 26 chr6 8893965 8894278 -180385276 - AluJo SINE Alu -7 305 1 391 148 23 0 chr6 8894571 8894659 -180384895 + CT-rich Low_complexity Low_complexity 3 92 0 231 173 0 0 chr6 8895185 8895237 -180384317 + C-rich Low_complexity Low_complexity 4 55 0 229 352 19 19 chr6 8895361 8895466 -180384088 - MIR3 SINE MIR -11 197 93 255 281 0 0 chr6 8895682 8895746 -180383808 + (CATA)n Simple_repeat Simple_repeat 4 67 0 180 77 0 0 chr6 8895988 8896014 -180383540 + (TA)n Simple_repeat Simple_repeat 2 27 0 237 65 0 0 chr6 8896058 8896089 -180383465 + (TG)n Simple_repeat Simple_repeat 2 32 0 2310 102 3 0 chr6 8897076 8897371 -180382183 - AluSp SINE Alu -17 296 1 21 0 0 0 chr6 8897591 8897612 -180381942 + AT_rich Low_complexity Low_complexity 1 21 0 276 30 0 0 chr6 8898094 8898127 -180381427 + (TG)n Simple_repeat Simple_repeat 1 33 0 525 236 156 31 chr6 8898503 8898728 -180380826 + MER112 DNA MER1_type 1 253 -7 1890 148 17 10 chr6 8899214 8899512 -180380042 - AluSx SINE Alu -12 300 1 22 70 0 0 chr6 8900699 8900742 -180378812 + AT_rich Low_complexity Low_complexity 1 43 0 1438 179 54 24 chr6 8901031 8901328 -180378226 - AluJo SINE Alu -6 306 1 406 269 40 120 chr6 8902047 8902396 -180377158 - MLT1K LTR MaLR -2 586 266 459 0 0 0 chr6 8902405 8902456 -180377098 + (TG)n Simple_repeat Simple_repeat 1 51 0 6725 60 19 2 chr6 8902458 8904164 -180375390 - L1PA7 LINE L1 -3 6151 4423 6899 100 2 5 chr6 8904165 8905201 -180374353 + L1P LINE L1 1490 2522 -3624 1294 268 38 38 chr6 8905326 8905886 -180373668 + MLT2F LTR ERVL 1 560 -103 1467 189 67 28 chr6 8905910 8906270 -180373284 - MLT1A2 LTR MaLR 0 374 1 379 276 110 24 chr6 8906559 8906686 -180372868 + L2 LINE L2 3125 3262 -10 200 328 30 0 chr6 8906987 8907054 -180372500 + L2 LINE L2 3198 3266 -6 2284 96 0 0 chr6 8908265 8908557 -180370997 - AluSg SINE Alu -18 292 1 1838 182 12 45 chr6 8908754 8909155 -180370399 + MLT1B LTR MaLR 3 390 0 1150 225 134 3 chr6 8910230 8910528 -180369026 + MER58B DNA MER1_type 1 337 -4 1505 54 0 0 chr6 8910808 8910993 -180368561 + L1PA4 LINE L1 5963 6147 -8 29 0 0 0 chr6 8910996 8911025 -180368529 + AT_rich Low_complexity Low_complexity 1 29 0 1922 94 128 0 chr6 8911904 8912170 -180367384 + AluSq SINE Alu 1 300 -13 1561 207 46 0 chr6 8912277 8912562 -180366992 + AluJo SINE Alu 1 298 -14 23 0 0 0 chr6 8912676 8912699 -180366855 + AT_rich Low_complexity Low_complexity 1 23 0 265 305 50 14 chr6 8913025 8913166 -180366388 + MLT1K LTR MaLR 335 480 -108 2487 186 215 21 chr6 8913349 8914070 -180365484 - pTR5 LTR ERV1 -226 2212 1352 984 273 79 69 chr6 8914393 8915197 -180364357 - L2 LINE L2 0 3313 2499 240 344 22 0 chr6 8915470 8915560 -180363994 + L2 LINE L2 3222 3313 0 180 219 158 12 chr6 8915588 8915670 -180363884 + MIR SINE MIR 97 190 -72 431 264 47 73 chr6 8916301 8916516 -180363038 - MIR SINE MIR 0 262 56 463 302 130 28 chr6 8917261 8917622 -180361932 - MLT1I LTR MaLR -9 400 3 878 184 32 16 chr6 8919736 8919921 -180359633 + MER3 DNA MER1_type 22 209 0 356 198 25 0 chr6 8921541 8921622 -180357932 + MER69 DNA AcHobo 1 83 -2443 279 275 58 0 chr6 8921744 8921864 -180357690 + MER69 DNA AcHobo 2393 2519 -7 247 258 70 39 chr6 8922058 8922186 -180357368 + MIR SINE MIR 18 149 -59 272 183 176 65 chr6 8922209 8922351 -180357203 + MER5A DNA MER1_type 4 183 -6 2071 140 24 34 chr6 8922630 8923009 -180356545 - THE1C LTR MaLR 0 375 1 1716 181 47 9 chr6 8923030 8923373 -180356181 + MLT1A1 LTR MaLR 10 365 0 1955 154 20 0 chr6 8923593 8923899 -180355655 + AluSx SINE Alu 1 312 0 840 262 173 22 chr6 8925656 8925848 -180353706 - MLT1G LTR MaLR -2 588 426 1917 134 17 76 chr6 8925848 8926205 -180353349 + MER1B DNA MER1_type 2 337 0 840 262 173 22 chr6 8926205 8926504 -180353050 - MLT1G LTR MaLR -164 426 23 2295 107 7 0 chr6 8927654 8927963 -180351591 + AluSq SINE Alu 1 311 -2 507 330 89 0 chr6 8928847 8929083 -180350471 + L2 LINE L2 2100 2356 -958 992 102 28 11 chr6 8929707 8929757 -180349797 + GA-rich Low_complexity Low_complexity 1 230 0 992 102 28 11 chr6 8929757 8929934 -180349620 + GA-rich Low_complexity Low_complexity 1 180 0 564 146 10 0 chr6 8930031 8930127 -180349427 - MLT1A2 LTR MaLR 0 374 278 522 329 61 4 chr6 8931438 8931669 -180347885 + MIR SINE MIR 11 254 -8 363 0 0 0 chr6 8932187 8932233 -180347321 - L1PA4 LINE L1 -175 5980 5935 1420 34 11 6 chr6 8932233 8932409 -180347145 + L1PA4 LINE L1 5975 6153 -2 21 0 0 0 chr6 8934012 8934033 -180345521 + AT_rich Low_complexity Low_complexity 1 21 0 2221 106 0 0 chr6 8934985 8935269 -180344285 + AluSx SINE Alu 1 284 -28 261 0 0 0 chr6 8935269 8935298 -180344256 + (TC)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr6 8936065 8936087 -180343467 + AT_rich Low_complexity Low_complexity 1 22 0 189 218 168 30 chr6 8936160 8936261 -180343293 - MIR SINE MIR -59 203 89 241 200 22 0 chr6 8936612 8936657 -180342897 + L3b LINE CR1 1422 1467 -116 21 0 0 0 chr6 8937097 8937118 -180342436 + AT_rich Low_complexity Low_complexity 1 21 0 395 321 49 5 chr6 8937315 8937539 -180342015 - HsTC2 DNA Tc2 -1026 872 639 446 195 144 8 chr6 8937985 8938103 -180341451 - MLT1D LTR MaLR -1 504 371 8574 104 35 0 chr6 8938106 8939363 -180340191 + L1PA7 LINE L1 1 1301 -5160 20279 90 8 6 chr6 8939371 8943772 -180335782 + L1PA7 LINE L1 2061 6467 -2 625 172 16 23 chr6 8943772 8943900 -180335654 - MLT1D LTR MaLR -119 386 260 3310 148 18 4 chr6 8943900 8944408 -180335146 - MER1A DNA MER1_type 0 529 15 321 250 0 65 chr6 8944550 8944642 -180334912 - MLT1D LTR MaLR -417 88 3 694 310 33 20 chr6 8944767 8944952 -180334602 + MER115 DNA AcHobo 390 582 -111 1850 161 24 18 chr6 8944952 8945293 -180334261 + MER2 DNA MER2_type 2 344 0 694 310 33 20 chr6 8945293 8945407 -180334147 + MER115 DNA AcHobo 582 693 0 193 233 23 0 chr6 8946021 8946064 -180333490 - L3 LINE CR1 -83 1494 1451 28 0 0 0 chr6 8947273 8947301 -180332253 + AT_rich Low_complexity Low_complexity 1 28 0 3878 166 13 11 chr6 8947750 8948462 -180331092 + L1MC1 LINE L1 5616 6328 -5 3668 75 20 2 chr6 8949719 8950222 -180329332 + L1PB1 LINE L1 5639 6150 -1 25 0 0 0 chr6 8950465 8950490 -180329064 + AT_rich Low_complexity Low_complexity 1 25 0 4506 161 19 20 chr6 8950490 8951337 -180328217 - L1MB1 LINE L1 -1 6167 5322 515 210 43 0 chr6 8951335 8951473 -180328081 + L1MB1 LINE L1 5185 5328 -818 * 522 119 40 23 chr6 8952540 8952717 -180326837 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 0 0 0 chr6 8952735 8952758 -180326796 + (TG)n Simple_repeat Simple_repeat 2 24 0 207 88 0 0 chr6 8952770 8952804 -180326750 + (CA)n Simple_repeat Simple_repeat 2 35 0 357 295 80 20 chr6 8953767 8954101 -180325453 + HAL1b LINE L1 497 641 -776 362 213 0 0 chr6 8954186 8954247 -180325307 + FLAM_A SINE Alu 28 88 -45 263 31 0 0 chr6 8954284 8954316 -180325238 + (GA)n Simple_repeat Simple_repeat 2 33 0 313 115 16 16 chr6 8954317 8954378 -180325176 + (GAAAA)n Simple_repeat Simple_repeat 4 64 0 868 186 16 15 chr6 8954394 8954656 -180324898 + GA-rich Low_complexity Low_complexity 1 261 -326 1430 182 60 33 chr6 8954656 8954958 -180324596 + AluJo SINE Alu 1 310 -2 868 186 16 15 chr6 8954958 8954981 -180324573 + GA-rich Low_complexity Low_complexity 261 587 0 231 114 0 0 chr6 8955017 8955052 -180324502 + (TTCA)n Simple_repeat Simple_repeat 3 37 0 3540 227 58 13 chr6 8955134 8956113 -180323441 + L1PB2 LINE L1 6 1028 -5835 729 235 0 29 chr6 8956100 8956304 -180323250 - L1PBa LINE L1 -5258 1605 1408 * 14224 181 15 46 chr6 8956300 8961024 -180318530 + L1PB2 LINE L1 1793 6404 -463 270 56 0 0 chr6 8961024 8961060 -180318494 + (TG)n Simple_repeat Simple_repeat 2 37 0 14224 181 15 46 chr6 8961060 8961511 -180318043 + L1PB2 LINE L1 6404 6867 0 24 0 0 0 chr6 8961545 8961569 -180317985 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr6 8961717 8961747 -180317807 + AT_rich Low_complexity Low_complexity 1 30 0 619 280 108 91 chr6 8962086 8962926 -180316628 + L1M4 LINE L1 2325 3179 -2967 1552 126 31 126 chr6 8963296 8963621 -180315933 - AluJb SINE Alu -7 295 2 6218 138 15 17 chr6 8963885 8965964 -180313590 - L1MA4 LINE L1 -5 6295 4220 208 128 64 43 chr6 8966213 8966260 -180313294 - MIR3 SINE MIR -17 191 144 220 77 96 0 chr6 8967310 8967362 -180312192 + (TA)n Simple_repeat Simple_repeat 2 58 0 296 130 14 0 chr6 8967425 8967494 -180312060 + (TA)n Simple_repeat Simple_repeat 2 71 0 393 58 0 0 chr6 8967879 8967931 -180311623 + (TG)n Simple_repeat Simple_repeat 2 53 0 501 308 27 7 chr6 8968965 8969111 -180310443 - MIR3 SINE MIR -4 204 56 22 0 0 0 chr6 8969259 8969281 -180310273 + AT_rich Low_complexity Low_complexity 1 22 0 15468 104 8 3 chr6 8970081 8972356 -180307198 - L1P LINE L1 -2371 3775 1490 6696 61 21 5 chr6 8972357 8974063 -180305491 + L1PA7 LINE L1 4423 6151 -3 378 0 0 0 chr6 8974065 8974107 -180305447 + (CA)n Simple_repeat Simple_repeat 1 42 0 493 269 40 120 chr6 8974117 8974466 -180305088 + MLT1K LTR MaLR 266 586 -2 1421 182 54 24 chr6 8975185 8975482 -180304072 + AluJb SINE Alu 1 306 -6 22 70 0 0 chr6 8975771 8975814 -180303740 + AT_rich Low_complexity Low_complexity 1 43 0 1875 144 17 10 chr6 8977001 8977299 -180302255 + AluSx SINE Alu 1 300 -12 604 236 156 31 chr6 8977785 8978010 -180301544 - MER112 DNA MER1_type -7 253 1 420 20 0 0 chr6 8978386 8978435 -180301119 + (CA)n Simple_repeat Simple_repeat 1 49 0 21 0 0 0 chr6 8978918 8978939 -180300615 + AT_rich Low_complexity Low_complexity 1 21 0 2312 98 3 0 chr6 8979159 8979455 -180300099 + AluSp SINE Alu 1 297 -16 237 65 0 0 chr6 8980441 8980472 -180299082 + (CA)n Simple_repeat Simple_repeat 2 32 0 198 71 0 0 chr6 8980516 8980544 -180299010 + (TA)n Simple_repeat Simple_repeat 2 29 0 255 281 0 0 chr6 8980786 8980850 -180298704 + (TATG)n Simple_repeat Simple_repeat 4 67 0 233 352 19 19 chr6 8981066 8981171 -180298383 + MIR3 SINE MIR 93 197 -11 231 173 0 0 chr6 8981295 8981347 -180298207 + G-rich Low_complexity Low_complexity 4 55 0 370 159 23 0 chr6 8981874 8981962 -180297592 + GA-rich Low_complexity Low_complexity 3 92 0 1578 209 0 17 chr6 8982255 8982557 -180296997 + AluJo SINE Alu 1 297 -15 1784 141 102 18 chr6 8982575 8982909 -180296645 + MLT1A1 LTR MaLR 4 365 0 666 158 7 20 chr6 8983362 8983514 -180296040 + GA-rich Low_complexity Low_complexity 2 151 0 1733 70 12 19 chr6 8983997 8984253 -180295301 + MER11A LTR ERVK 1013 1266 0 310 204 153 51 chr6 8984772 8984870 -180294684 + MIR3 SINE MIR 83 190 -18 23 0 0 0 chr6 8985854 8985877 -180293677 + AT_rich Low_complexity Low_complexity 1 23 0 374 325 90 5 chr6 8985883 8986071 -180293483 - MIR SINE MIR -38 224 21 199 349 95 35 chr6 8988313 8988628 -180290926 + L2 LINE L2 2529 2862 -452 2203 120 0 0 chr6 8988724 8989025 -180290529 + AluSc SINE Alu 1 301 -8 2901 126 0 0 chr6 8989025 8989454 -180290100 + L1PA15 LINE L1 5727 6155 -10 32 0 0 0 chr6 8989454 8989486 -180290068 + AT_rich Low_complexity Low_complexity 1 32 0 427 276 82 102 chr6 8989505 8989683 -180289871 + L2 LINE L2 2941 3112 -160 2357 97 0 0 chr6 8989683 8989982 -180289572 + AluSx SINE Alu 1 299 -13 427 276 82 102 chr6 8989982 8990107 -180289447 + L2 LINE L2 3112 3238 -34 7922 12 0 0 chr6 8990208 8991818 -180287736 + L1PA2 LINE L1 4546 6155 0 7927 12 0 0 chr6 8990916 8991818 -180287736 + L1PA2 LINE L1 5254 6204 0 207 265 0 0 chr6 8991818 8991867 -180287687 + A-rich Low_complexity Low_complexity 1 180 0 408 238 144 50 chr6 8992825 8992985 -180286569 - MER91B DNA MER1_type -10 180 6 261 0 0 0 chr6 8992988 8993017 -180286537 + (CA)n Simple_repeat Simple_repeat 1 29 0 459 229 65 65 chr6 8993773 8993974 -180285580 - L2 LINE L2 0 3313 3113 * 1078 339 81 33 chr6 8993961 8994569 -180284985 - L2 LINE L2 -543 2771 2135 482 325 128 5 chr6 8994575 8994778 -180284776 + MLT1J1 LTR MaLR 215 442 -4 2025 134 49 37 chr6 8995427 8995837 -180283717 - L1MA4 LINE L1 0 6300 5886 222 233 0 0 chr6 8996373 8996416 -180283138 + (CATATA)n Simple_repeat Simple_repeat 5 47 0 664 310 161 28 chr6 8996751 8997148 -180282406 - LTR16C LTR ERVL 0 491 42 2176 109 30 0 chr6 8997954 8998257 -180281297 + AluSx SINE Alu 1 312 0 616 333 68 30 chr6 8998412 8998778 -180280776 + MLT1I LTR MaLR 2 381 -28 500 305 114 17 chr6 8998763 8999201 -180280353 + LTR33 LTR ERVL 17 520 -1 * 378 257 44 26 chr6 9000304 9000417 -180279137 - MIR SINE MIR -67 195 81 274 268 99 26 chr6 9001063 9001257 -180278297 + MIR SINE MIR 20 221 -41 22 0 0 0 chr6 9001424 9001446 -180278108 + AT_rich Low_complexity Low_complexity 1 22 0 592 285 131 9 chr6 9002837 9003051 -180276503 + MIR SINE MIR 22 261 -1 257 289 67 0 chr6 9004510 9004614 -180274940 + MIR SINE MIR 121 231 -31 210 368 26 40 chr6 9005370 9005522 -180274032 - L2 LINE L2 -557 2757 2608 569 302 52 27 chr6 9007424 9007752 -180271802 + L1ME4a LINE L1 5523 5858 -263 286 381 60 16 chr6 9007948 9008197 -180271357 + L2 LINE L2 2811 3070 -243 201 219 0 0 chr6 9008349 9008390 -180271164 + L2 LINE L2 3272 3312 -1 306 0 0 0 chr6 9008715 9008749 -180270805 + (TG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr6 9009554 9009578 -180269976 + AT_rich Low_complexity Low_complexity 1 24 0 2046 127 0 31 chr6 9011016 9011338 -180268216 + AluJb SINE Alu 1 312 0 36 40 0 0 chr6 9011922 9011972 -180267582 + AT_rich Low_complexity Low_complexity 1 50 0 2097 114 0 0 chr6 9012047 9012336 -180267218 - AluSg SINE Alu -1 309 21 268 298 35 94 chr6 9012382 9012553 -180267001 - L2 LINE L2 -159 3113 2953 4387 184 25 31 chr6 9014870 9015716 -180263838 + MER21B LTR ERV1 1 841 -22 25 0 0 0 chr6 9015850 9015875 -180263679 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr6 9016091 9016134 -180263420 + AT_rich Low_complexity Low_complexity 1 43 0 1600 237 26 40 chr6 9016227 9016338 -180263216 - L1ME LINE L1 -392 6569 6458 207 69 0 0 chr6 9016338 9016367 -180263187 + (TG)n Simple_repeat Simple_repeat 2 30 0 1600 237 26 40 chr6 9016367 9017093 -180262461 - L1ME LINE L1 -503 6458 5750 630 234 100 65 chr6 9017120 9017667 -180261887 - L1MCc LINE L1 -4887 1536 1291 858 301 121 16 chr6 9017692 9018130 -180261424 - L1MCc LINE L1 -5200 1223 740 1015 223 26 108 chr6 9019357 9019566 -180259988 + L1ME2 LINE L1 5773 5933 -231 2627 36 3 0 chr6 9019566 9019867 -180259687 - AluY SINE Alu -9 302 1 1015 223 26 108 chr6 9019867 9020075 -180259479 + L1ME2 LINE L1 5933 6156 -8 467 263 78 43 chr6 9020091 9020203 -180259351 + L1MEd LINE L1 949 1056 -5063 1847 159 0 26 chr6 9020203 9020512 -180259042 + AluJo SINE Alu 1 301 -11 467 263 78 43 chr6 9020512 9020680 -180258874 + L1MEd LINE L1 1056 1239 -4880 1994 142 3 7 chr6 9021100 9021396 -180258158 + AluSx SINE Alu 3 297 -15 546 314 50 0 chr6 9021542 9021701 -180257853 + MIR SINE MIR 23 189 -73 259 325 60 0 chr6 9021854 9021971 -180257583 + MIR SINE MIR 74 197 -65 720 307 141 14 chr6 9021985 9022458 -180257096 + L2 LINE L2 2768 3309 -4 451 317 116 9 chr6 9023210 9023434 -180256120 + MIR SINE MIR 8 255 -7 353 309 142 6 chr6 9023897 9024059 -180255495 - MLT1J2 LTR MaLR -143 307 124 215 286 39 39 chr6 9024203 9024280 -180255274 - MIR SINE MIR -184 78 2 2429 151 47 7 chr6 9024892 9025317 -180254237 - Tigger1 DNA MER2_type 0 2418 1977 * 8787 128 21 9 chr6 9025314 9026685 -180252869 - Tigger1 DNA MER2_type -1001 1417 31 369 131 0 0 chr6 9027131 9027192 -180252362 + (CA)n Simple_repeat Simple_repeat 1 61 0 696 273 98 35 chr6 9030688 9030974 -180248580 + L2 LINE L2 3006 3309 -4 261 317 58 29 chr6 9030981 9031085 -180248469 + MIR3 SINE MIR 66 172 -36 1038 234 140 88 chr6 9031311 9032039 -180247515 + LTR41 LTR ERVL 1 766 -7 22 0 0 0 chr6 9032178 9032200 -180247354 + AT_rich Low_complexity Low_complexity 1 22 0 265 311 78 11 chr6 9033283 9033373 -180246181 - MIR3 SINE MIR -50 158 63 838 271 197 14 chr6 9033426 9033858 -180245696 + MLT1J LTR MaLR 1 511 0 247 268 24 24 chr6 9033952 9034051 -180245503 + MER5A DNA MER1_type 4 102 -87 22 0 0 0 chr6 9034808 9034830 -180244724 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr6 9034985 9035019 -180244535 + AT_rich Low_complexity Low_complexity 1 34 0 5879 91 11 0 chr6 9035019 9036454 -180243100 - L1PA8A LINE L1 -3 6128 4690 3563 116 227 0 chr6 9036455 9037156 -180242398 - L1PA8A LINE L1 -1545 4601 3742 2320 225 105 43 chr6 9037289 9037430 -180242124 - L1ME1 LINE L1 -5 6144 6013 2203 86 0 7 chr6 9037430 9037738 -180241816 - AluSc SINE Alu 0 306 1 2320 225 105 43 chr6 9037738 9038961 -180240593 - L1ME1 LINE L1 -136 6013 4686 1251 257 60 12 chr6 9038966 9039382 -180240172 - L1ME1 LINE L1 -1938 4191 3756 464 272 71 42 chr6 9039959 9040129 -180239425 - L1ME1 LINE L1 -4880 1239 1056 1796 163 0 26 chr6 9040129 9040435 -180239119 - AluJo SINE Alu -14 298 1 464 272 71 42 chr6 9040435 9040547 -180239007 - L1ME1 LINE L1 -5063 1056 949 1022 223 26 108 chr6 9040563 9040771 -180238783 - L1ME2 LINE L1 -8 6156 5997 2448 38 34 0 chr6 9040771 9041062 -180238492 + AluY SINE Alu 1 301 -10 1022 223 26 108 chr6 9041062 9041271 -180238283 - L1ME2 LINE L1 -167 5997 5773 901 301 121 16 chr6 9042498 9042936 -180236618 + L1ME LINE L1 740 1223 -5200 616 231 102 68 chr6 9042961 9043508 -180236046 + L1ME LINE L1 1291 1833 -4887 1566 238 27 40 chr6 9043535 9044260 -180235294 + L1ME LINE L1 5750 6458 -503 207 69 0 0 chr6 9044260 9044289 -180235265 + (CA)n Simple_repeat Simple_repeat 2 30 0 1566 238 27 40 chr6 9044289 9044400 -180235154 + L1ME LINE L1 6458 6569 -392 22 70 0 0 chr6 9044493 9044536 -180235018 + AT_rich Low_complexity Low_complexity 1 43 0 576 200 90 0 chr6 9044639 9044784 -180234770 + L1MB1 LINE L1 4775 4932 -1214 2606 45 0 3 chr6 9044824 9045132 -180234422 - AluY SINE Alu -4 307 1 2368 225 34 17 chr6 9045162 9045806 -180233748 - L1MB1 LINE L1 -783 5363 4709 * 4121 150 53 8 chr6 9045804 9046570 -180232984 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9046573 9046599 -180232955 + (TAA)n Simple_repeat Simple_repeat 2 27 0 706 263 202 20 chr6 9046601 9046898 -180232656 - L2 LINE L2 -1625 1689 1339 433 285 73 0 chr6 9046956 9047079 -180232475 - MER58B DNA MER1_type 0 341 210 283 314 0 0 chr6 9047266 9047336 -180232218 - MER63 DNA MER1_type -7 1053 984 278 229 43 0 chr6 9047358 9047428 -180232126 - MER63 DNA MER1_type -123 713 15 480 250 86 0 chr6 9047905 9048033 -180231521 + MIR SINE MIR 86 224 -38 915 328 65 21 chr6 9048061 9048723 -180230831 + L2 LINE L2 2629 3313 0 2289 109 0 3 chr6 9048997 9049310 -180230244 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9049833 9049893 -180229661 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9050278 9050304 -180229250 + AT_rich Low_complexity Low_complexity 1 26 0 630 222 0 0 chr6 9051250 9051358 -180228196 + Tigger3(Golem) DNA MER2_type 1 108 -2921 432 0 0 0 chr6 9051358 9051406 -180228148 + (T)n Simple_repeat Simple_repeat 1 48 0 1951 83 8 0 chr6 9051460 9051726 -180227828 - L1PA8 LINE L1 0 6172 5905 4158 140 28 29 chr6 9051731 9052481 -180227073 + Tigger3(Golem) DNA MER2_type 2281 3029 0 375 266 0 62 chr6 9052483 9052611 -180226943 + L2 LINE L2 3180 3299 -14 295 287 59 30 chr6 9052715 9052816 -180226738 - L2 LINE L2 0 3313 3210 401 222 127 16 chr6 9052862 9052988 -180226566 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9053578 9053608 -180225946 + (CA)n Simple_repeat Simple_repeat 2 31 0 566 157 62 105 chr6 9054258 9054468 -180225086 - L1MA9 LINE L1 -1 6311 6111 344 237 49 105 chr6 9054480 9054653 -180224901 - MIR SINE MIR -62 146 32 317 273 20 40 chr6 9056368 9056467 -180223087 + MIR SINE MIR 82 178 -84 2134 90 0 0 chr6 9057009 9057276 -180222278 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9057461 9057499 -180222055 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 422 267 136 11 chr6 9057522 9057698 -180221856 + MIR SINE MIR 46 243 -19 285 245 59 29 chr6 9057741 9057843 -180221711 - MIR3 SINE MIR -3 205 101 1467 189 172 56 chr6 9057860 9057899 -180221655 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9057899 9057943 -180221611 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1467 189 172 56 chr6 9057943 9058369 -180221185 - MLT2B1 LTR ERVL -33 487 1 1839 156 3 0 chr6 9058554 9058871 -180220683 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9060142 9060203 -180219351 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9060953 9061079 -180218475 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9061124 9061514 -180218040 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9063121 9063293 -180216261 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9064539 9064734 -180214820 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9065328 9065362 -180214192 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9065362 9065671 -180213883 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9065702 9065779 -180213775 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9066475 9066496 -180213058 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9066527 9066592 -180212962 - L1PB1 LINE L1 0 6151 6088 285 197 0 0 chr6 9067052 9067128 -180212426 + C-rich Low_complexity Low_complexity 1 76 0 522 119 40 23 chr6 9067268 9067445 -180212109 + (TA)n Simple_repeat Simple_repeat 1 180 0 515 210 43 0 chr6 9068512 9068650 -180210904 - L1MB1 LINE L1 -818 5328 5185 * 4506 161 19 20 chr6 9068648 9069495 -180210059 + L1MB1 LINE L1 5322 6167 -1 25 0 0 0 chr6 9069495 9069520 -180210034 + AT_rich Low_complexity Low_complexity 1 25 0 3683 74 20 2 chr6 9069763 9070266 -180209288 - L1PB1 LINE L1 -1 6150 5639 3878 166 13 11 chr6 9071523 9072235 -180207319 - L1MC1 LINE L1 -5 6328 5616 28 0 0 0 chr6 9072684 9072712 -180206842 + AT_rich Low_complexity Low_complexity 1 28 0 193 233 23 0 chr6 9073921 9073964 -180205590 + L3 LINE CR1 1451 1494 -83 694 310 33 20 chr6 9074578 9074692 -180204862 - MER115 DNA AcHobo 0 693 582 1850 161 24 18 chr6 9074692 9075033 -180204521 - MER2 DNA MER2_type 0 344 2 694 310 33 20 chr6 9075033 9075218 -180204336 - MER115 DNA AcHobo -111 582 390 321 250 0 65 chr6 9075343 9075435 -180204119 + MLT1D LTR MaLR 3 88 -417 3310 148 18 4 chr6 9075577 9076085 -180203469 + MER1A DNA MER1_type 15 529 0 625 172 16 23 chr6 9076085 9076213 -180203341 + MLT1D LTR MaLR 260 386 -119 25080 90 8 6 chr6 9076213 9080614 -180198940 - L1PA7 LINE L1 -2 6467 2061 9058 104 35 0 chr6 9080622 9081879 -180197675 - L1PA7 LINE L1 -5160 1301 1 484 195 144 8 chr6 9081882 9082000 -180197554 + MLT1D LTR MaLR 371 504 -1 225 158 0 0 chr6 9082264 9082302 -180197252 + HsTC2 DNA Tc2 231 268 -1630 457 321 49 5 chr6 9082446 9082670 -180196884 + HsTC2 DNA Tc2 639 872 -1026 21 0 0 0 chr6 9082867 9082888 -180196666 + AT_rich Low_complexity Low_complexity 1 21 0 241 200 22 0 chr6 9083328 9083373 -180196181 - L3b LINE CR1 -116 1467 1422 189 218 168 30 chr6 9083724 9083825 -180195729 + MIR SINE MIR 89 203 -59 22 0 0 0 chr6 9083898 9083920 -180195634 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr6 9084685 9084714 -180194840 + (GA)n Simple_repeat Simple_repeat 2 30 0 2212 106 0 0 chr6 9084714 9084998 -180194556 - AluSx SINE Alu -28 284 1 21 0 0 0 chr6 9085950 9085971 -180193583 + AT_rich Low_complexity Low_complexity 1 21 0 1414 34 11 6 chr6 9087574 9087752 -180191802 - L1PA4 LINE L1 -2 6153 5975 351 0 0 0 chr6 9087752 9087796 -180191758 + L1PA4 LINE L1 5937 5980 -175 519 329 61 4 chr6 9088314 9088545 -180191009 - MIR SINE MIR -8 254 11 596 146 10 0 chr6 9089856 9089952 -180189602 + MLT1A2 LTR MaLR 278 374 0 965 103 29 11 chr6 9090002 9090049 -180189505 + CT-rich Low_complexity Low_complexity 1 224 0 965 103 29 11 chr6 9090049 9090223 -180189331 + CT-rich Low_complexity Low_complexity 4 180 0 513 330 89 0 chr6 9090896 9091132 -180188422 - L2 LINE L2 -958 2356 2100 2275 107 7 0 chr6 9092016 9092325 -180187229 - AluSq SINE Alu -2 311 1 840 262 173 22 chr6 9093475 9093774 -180185780 + MLT1G LTR MaLR 23 276 -314 1917 134 17 76 chr6 9093774 9094131 -180185423 - MER1B DNA MER1_type 0 337 2 840 262 173 22 chr6 9094131 9094323 -180185231 + MLT1G LTR MaLR 276 588 -2 1955 154 20 0 chr6 9096080 9096386 -180183168 - AluSx SINE Alu 0 312 1 1716 181 47 9 chr6 9096606 9096949 -180182605 - MLT1A1 LTR MaLR 0 365 10 2071 140 24 34 chr6 9096970 9097349 -180182205 + THE1C LTR MaLR 1 375 0 272 183 176 65 chr6 9097628 9097770 -180181784 - MER5A DNA MER1_type -6 183 4 247 258 70 39 chr6 9097793 9097921 -180181633 - MIR SINE MIR -59 149 18 279 275 58 0 chr6 9098115 9098235 -180181319 - MER69 DNA AcHobo -7 2519 2393 356 198 25 0 chr6 9098357 9098438 -180181116 - MER69 DNA AcHobo -2443 83 1 878 184 32 16 chr6 9100058 9100243 -180179311 - MER3 DNA MER1_type 0 209 22 463 302 130 28 chr6 9102357 9102718 -180176836 + MLT1I LTR MaLR 3 400 -9 431 264 47 73 chr6 9103463 9103678 -180175876 + MIR SINE MIR 56 262 0 180 219 158 12 chr6 9104309 9104391 -180175163 - MIR SINE MIR -72 190 97 240 344 22 0 chr6 9104419 9104509 -180175045 - L2 LINE L2 0 3313 3222 984 273 79 69 chr6 9104782 9105586 -180173968 + L2 LINE L2 2499 3313 0 2487 186 215 21 chr6 9105909 9106630 -180172924 + pTR5 LTR ERV1 1352 2212 -226 265 305 50 14 chr6 9106813 9106954 -180172600 - MLT1K LTR MaLR -108 480 335 23 0 0 0 chr6 9107280 9107303 -180172251 + AT_rich Low_complexity Low_complexity 1 23 0 1561 207 46 0 chr6 9107417 9107702 -180171852 - AluJo SINE Alu -14 298 1 1887 94 127 4 chr6 9107809 9108076 -180171478 - AluSq SINE Alu -13 300 1 29 0 0 0 chr6 9108955 9108984 -180170570 + AT_rich Low_complexity Low_complexity 1 29 0 1505 54 0 0 chr6 9108987 9109172 -180170382 - L1PA4 LINE L1 -8 6147 5963 1169 221 134 3 chr6 9109452 9109750 -180169804 - MER58B DNA MER1_type -4 337 1 1838 182 12 45 chr6 9110825 9111226 -180168328 - MLT1B LTR MaLR 0 390 3 2284 96 0 0 chr6 9111423 9111715 -180167839 + AluSg SINE Alu 1 292 -18 200 328 30 0 chr6 9112926 9112993 -180166561 - L2 LINE L2 -6 3266 3198 379 276 110 24 chr6 9113294 9113421 -180166133 - L2 LINE L2 -10 3262 3125 1467 189 67 28 chr6 9113710 9114070 -180165484 + MLT1A2 LTR MaLR 1 374 0 1294 268 38 38 chr6 9114094 9114654 -180164900 - MLT2F LTR ERVL -103 560 1 204 163 0 23 chr6 9115406 9115449 -180164105 + A-rich Low_complexity Low_complexity 2 43 0 276 30 0 0 chr6 9115826 9115859 -180163695 + (A)n Simple_repeat Simple_repeat 1 33 0 377 361 95 23 chr6 9116764 9117110 -180162444 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9117636 9118183 -180161371 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9120894 9121248 -180158306 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9121739 9121890 -180157664 - MIR SINE MIR -74 188 46 189 0 0 0 chr6 9124876 9124897 -180154657 + (T)n Simple_repeat Simple_repeat 1 21 0 247 362 0 0 chr6 9125414 9125483 -180154071 - L2 LINE L2 -4 3268 3200 826 213 4 43 chr6 9127144 9127374 -180152180 + pTR5 LTR ERV1 743 963 -1475 * 1252 139 30 11 chr6 9127347 9127614 -180151940 - pTR5 LTR ERV1 -1093 1345 1074 3781 115 132 127 chr6 9127796 9129261 -180150293 + pTR5 LTR ERV1 1088 2438 0 180 292 21 0 chr6 9130483 9130531 -180149023 - MIR SINE MIR -10 252 204 2283 225 105 8 chr6 9130844 9131659 -180147895 + L1ME2 LINE L1 5236 6148 -18 252 293 24 42 chr6 9131681 9131893 -180147661 + L1MC4 LINE L1 7834 8041 -1 302 280 13 0 chr6 9132660 9132735 -180146819 - MIR3 SINE MIR -17 191 116 519 154 49 0 chr6 9133421 9133544 -180146010 - L1MA10 LINE L1 -2 6332 6204 387 41 0 0 chr6 9134497 9134546 -180145008 + (TG)n Simple_repeat Simple_repeat 1 49 0 361 321 67 12 chr6 9135142 9135307 -180144247 + MIR SINE MIR 70 243 -19 231 244 105 118 chr6 9135408 9135646 -180143908 + L2 LINE L2 3015 3249 -64 198 118 0 0 chr6 9137747 9137781 -180141773 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9139561 9139639 -180139915 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9139750 9140127 -180139427 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9140499 9140807 -180138747 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9140935 9141016 -180138538 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9141494 9141689 -180137865 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9141718 9141741 -180137813 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9141783 9141923 -180137631 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9142359 9142790 -180136764 + MER115 DNA AcHobo 2 434 -259 2626 51 0 0 chr6 9142797 9143108 -180136446 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9143208 9143296 -180136258 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9144194 9144218 -180135336 + AT_rich Low_complexity Low_complexity 1 24 0 1305 200 3 7 chr6 9144498 9144718 -180134836 - L1MB3 LINE L1 -2 6181 5961 1973 117 27 20 chr6 9144718 9144889 -180134665 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9144889 9144927 -180134627 + (TG)n Simple_repeat Simple_repeat 2 40 0 1973 117 27 20 chr6 9144927 9145054 -180134500 - AluSx SINE Alu -186 126 1 1305 200 3 7 chr6 9145054 9145123 -180134431 - L1MB3 LINE L1 -222 5961 5893 720 180 0 7 chr6 9145127 9145266 -180134288 - L1MB3 LINE L1 -719 5461 5324 912 250 94 3 chr6 9145266 9145650 -180133904 + MER114 LTR ERV 178 596 -52 1861 90 105 18 chr6 9146171 9146448 -180133106 + AluSq SINE Alu 1 301 -12 2028 121 0 0 chr6 9146812 9147094 -180132460 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9147606 9147630 -180131924 + (CA)n Simple_repeat Simple_repeat 2 25 0 629 368 68 29 chr6 9148126 9148507 -180131047 - L2 LINE L2 -5 3267 2872 957 365 37 23 chr6 9148574 9149351 -180130203 - L2 LINE L2 -514 2800 2013 187 411 18 0 chr6 9149627 9149683 -180129871 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9150013 9150053 -180129501 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 411 286 97 35 chr6 9150053 9150280 -180129274 - L2 LINE L2 -20 3293 3053 539 250 170 9 chr6 9150350 9150574 -180128980 + LTR16C LTR ERVL 232 491 0 1443 257 31 53 chr6 9150932 9151418 -180128136 - LTR53 LTR ERVL -9 510 36 2220 127 0 0 chr6 9153466 9153774 -180125780 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9154468 9154499 -180125055 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9154521 9154551 -180125003 + AT_rich Low_complexity Low_complexity 1 30 0 4984 220 58 41 chr6 9156471 9159211 -180120343 - L1MD1 LINE L1 0 6242 3451 1508 142 4 37 chr6 9159272 9159518 -180120036 - MER1B DNA MER1_type -1 338 101 1875 138 95 14 chr6 9159518 9159865 -180119689 + THE1C LTR MaLR 1 375 0 9642 117 53 11 chr6 9159865 9161381 -180118173 + THE1C-int LTR MaLR 1 1580 0 475 111 12 49 chr6 9161381 9161462 -180118092 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9163756 9163785 -180115769 + AT_rich Low_complexity Low_complexity 1 29 0 558 264 171 39 chr6 9164233 9164315 -180115239 - L2 LINE L2 -1267 2047 1977 1790 208 8 24 chr6 9164315 9164686 -180114868 - MLT1A1 LTR MaLR 0 365 1 558 264 171 39 chr6 9164686 9164861 -180114693 - L2 LINE L2 -1337 1977 1756 2430 93 0 0 chr6 9164864 9165165 -180114389 + AluSg SINE Alu 1 301 -9 732 198 76 0 chr6 9165172 9165344 -180114210 + L1 LINE L1 4748 4932 -1214 1095 64 7 0 chr6 9165384 9165525 -180114029 - AluY SINE Alu -4 307 166 377 361 95 23 chr6 9216311 9216657 -180062897 + L2 LINE L2 2273 2643 -671 2587 168 40 7 chr6 9217183 9217730 -180061824 - L1MA8 LINE L1 -2 6289 5725 1351 164 79 54 chr6 9220441 9220795 -180058759 + MLT1A1 LTR MaLR 3 365 0 310 291 26 80 chr6 9221286 9221437 -180058117 - MIR SINE MIR -74 188 46 207 0 0 0 chr6 9224423 9224446 -180055108 + (T)n Simple_repeat Simple_repeat 1 23 0 247 362 0 0 chr6 9224963 9225032 -180054522 - L2 LINE L2 -4 3268 3200 830 209 4 43 chr6 9226693 9226923 -180052631 + pTR5 LTR ERV1 743 963 -1475 * 1255 135 30 11 chr6 9226896 9227163 -180052391 - pTR5 LTR ERV1 -1093 1345 1074 * 4474 119 122 120 chr6 9227148 9228772 -180050782 + pTR5 LTR ERV1 936 2438 0 180 292 21 0 chr6 9229994 9230042 -180049512 - MIR SINE MIR -10 252 204 198 118 0 0 chr6 9231036 9231070 -180048484 + (TG)n Simple_repeat Simple_repeat 1 34 0 437 128 0 0 chr6 9232850 9232928 -180046626 - L1MA9 LINE L1 -2 6310 6233 1943 138 32 37 chr6 9233039 9233416 -180046138 - THE1C LTR MaLR 0 375 1 2326 101 7 7 chr6 9233788 9234096 -180045458 + AluSg SINE Alu 1 308 -2 308 321 12 0 chr6 9234224 9234305 -180045249 + L2 LINE L2 3154 3235 -37 699 193 17 45 chr6 9234783 9234978 -180044576 + MLT1A2 LTR MaLR 6 205 -214 23 0 0 0 chr6 9235007 9235030 -180044524 + AT_rich Low_complexity Low_complexity 1 23 0 622 236 21 0 chr6 9235072 9235212 -180044342 + MLT1A2 LTR MaLR 190 332 -58 814 311 49 44 chr6 9235648 9236079 -180043475 + MER115 DNA AcHobo 2 434 -259 2621 51 0 0 chr6 9236086 9236397 -180043157 + AluY SINE Alu 1 311 0 220 330 80 0 chr6 9236497 9236585 -180042969 + MIR SINE MIR 46 140 -122 24 0 0 0 chr6 9237483 9237507 -180042047 + AT_rich Low_complexity Low_complexity 1 24 0 1290 200 3 7 chr6 9237787 9238007 -180041547 - L1MB3 LINE L1 -2 6181 5961 1990 117 27 20 chr6 9238007 9238178 -180041376 - AluSx SINE Alu -11 301 126 269 26 26 0 chr6 9238178 9238216 -180041338 + (TG)n Simple_repeat Simple_repeat 2 40 0 1990 117 27 20 chr6 9238216 9238343 -180041211 - AluSx SINE Alu -186 126 1 1290 200 3 7 chr6 9238343 9238412 -180041142 - L1MB3 LINE L1 -222 5961 5893 677 180 0 7 chr6 9238416 9238555 -180040999 - L1MB3 LINE L1 -719 5461 5324 826 250 94 3 chr6 9238555 9238939 -180040615 + MER114 LTR ERV 178 596 -52 1870 90 105 18 chr6 9239460 9239737 -180039817 + AluSq SINE Alu 1 301 -12 2019 124 0 0 chr6 9240101 9240383 -180039171 + AluSx SINE Alu 15 296 -16 195 42 0 0 chr6 9240895 9240919 -180038635 + (CA)n Simple_repeat Simple_repeat 2 25 0 622 368 68 29 chr6 9241415 9241796 -180037758 - L2 LINE L2 -5 3267 2872 995 364 37 23 chr6 9241863 9242640 -180036914 - L2 LINE L2 -514 2800 2013 186 411 18 0 chr6 9242916 9242972 -180036582 - L2 LINE L2 -87 3185 3129 360 0 0 0 chr6 9243302 9243342 -180036212 + (TTCA)n Simple_repeat Simple_repeat 2 41 0 415 286 97 35 chr6 9243342 9243569 -180035985 - L2 LINE L2 -20 3293 3053 461 250 170 9 chr6 9243639 9243863 -180035691 + LTR16C LTR ERVL 232 491 0 1299 257 31 53 chr6 9244221 9244707 -180034847 - LTR53 LTR ERVL -9 510 36 2220 127 0 0 chr6 9246755 9247063 -180032491 + AluSg SINE Alu 1 308 -2 24 32 0 0 chr6 9247757 9247788 -180031766 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr6 9247810 9247840 -180031714 + AT_rich Low_complexity Low_complexity 1 30 0 4984 220 58 41 chr6 9249760 9252500 -180027054 - L1MD1 LINE L1 0 6242 3451 1508 142 4 37 chr6 9252559 9252805 -180026749 - MER1B DNA MER1_type -1 338 101 1875 138 95 14 chr6 9252805 9253152 -180026402 + THE1C LTR MaLR 1 375 0 9642 117 53 11 chr6 9253152 9254668 -180024886 + THE1C-int LTR MaLR 1 1580 0 475 111 12 49 chr6 9254668 9254749 -180024805 + THE1C LTR MaLR 1 78 -297 22 35 0 0 chr6 9257043 9257072 -180022482 + AT_rich Low_complexity Low_complexity 1 29 0 558 264 171 39 chr6 9257520 9257602 -180021952 - L2 LINE L2 -1267 2047 1977 1790 208 8 24 chr6 9257602 9257973 -180021581 - MLT1A1 LTR MaLR 0 365 1 558 264 171 39 chr6 9257973 9258148 -180021406 - L2 LINE L2 -1337 1977 1756 2430 93 0 0 chr6 9258151 9258452 -180021102 + AluSg SINE Alu 1 301 -9 776 196 69 0 chr6 9258459 9258632 -180020922 + L1MB1 LINE L1 4748 4932 -1214 2622 45 0 3 chr6 9258672 9258982 -180020572 - AluY SINE Alu -2 309 1 2368 225 34 17 chr6 9259012 9259656 -180019898 - L1MB1 LINE L1 -783 5363 4709 * 4121 150 53 8 chr6 9259654 9260420 -180019134 + L1MB1 LINE L1 5355 6155 -13 213 39 0 0 chr6 9260423 9260449 -180019105 + (TAA)n Simple_repeat Simple_repeat 2 27 0 706 263 202 20 chr6 9260451 9260748 -180018806 - L2 LINE L2 -1625 1689 1339 433 285 73 0 chr6 9260806 9260929 -180018625 - MER58B DNA MER1_type 0 341 210 283 314 0 0 chr6 9261116 9261186 -180018368 - MER63 DNA MER1_type -7 1054 985 278 229 43 0 chr6 9261208 9261278 -180018276 - MER63 DNA MER1_type -349 713 15 480 250 86 0 chr6 9261755 9261883 -180017671 + MIR SINE MIR 86 224 -38 915 328 65 21 chr6 9261911 9262573 -180016981 + L2 LINE L2 2629 3313 0 2289 109 0 3 chr6 9262846 9263159 -180016395 - AluSx SINE Alu 0 312 1 206 250 0 17 chr6 9263682 9263742 -180015812 + T-rich Low_complexity Low_complexity 4 62 0 26 0 0 0 chr6 9264127 9264153 -180015401 + AT_rich Low_complexity Low_complexity 1 26 0 630 222 0 0 chr6 9265099 9265207 -180014347 + Tigger3(Golem) DNA MER2_type 1 108 -2921 198 0 0 0 chr6 9265207 9265229 -180014325 + (T)n Simple_repeat Simple_repeat 1 22 0 1951 83 8 0 chr6 9265283 9265549 -180014005 - L1PA8 LINE L1 0 6172 5905 4158 140 28 29 chr6 9265554 9266304 -180013250 + Tigger3(Golem) DNA MER2_type 2281 3029 0 375 266 0 62 chr6 9266306 9266434 -180013120 + L2 LINE L2 3180 3299 -14 295 287 59 30 chr6 9266538 9266639 -180012915 - L2 LINE L2 0 3313 3210 401 222 127 16 chr6 9266685 9266811 -180012743 + MER5A DNA MER1_type 43 182 -7 270 0 0 0 chr6 9267401 9267431 -180012123 + (CA)n Simple_repeat Simple_repeat 2 31 0 566 157 62 105 chr6 9268081 9268291 -180011263 - L1MA9 LINE L1 -1 6311 6111 344 237 49 105 chr6 9268303 9268476 -180011078 - MIR SINE MIR -62 146 32 317 273 20 40 chr6 9270191 9270290 -180009264 + MIR SINE MIR 82 178 -84 2134 90 0 0 chr6 9270832 9271099 -180008455 + AluSx SINE Alu 1 267 -45 212 158 0 0 chr6 9271284 9271322 -180008232 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 422 267 136 11 chr6 9271345 9271521 -180008033 + MIR SINE MIR 46 243 -19 285 245 59 29 chr6 9271564 9271666 -180007888 - MIR3 SINE MIR -3 205 101 1467 189 172 56 chr6 9271683 9271722 -180007832 - MLT2B1 LTR ERVL 0 520 487 279 114 0 0 chr6 9271722 9271766 -180007788 + (TTTA)n Simple_repeat Simple_repeat 3 46 0 1467 189 172 56 chr6 9271766 9272192 -180007362 - MLT2B1 LTR ERVL -33 487 1 1879 155 0 0 chr6 9272377 9272695 -180006859 - AluJb SINE Alu 0 318 1 40 49 0 0 chr6 9273966 9274027 -180005527 + AT_rich Low_complexity Low_complexity 1 61 0 372 175 0 151 chr6 9274777 9274903 -180004651 + L2 LINE L2 3206 3312 -1 573 356 103 20 chr6 9274948 9275338 -180004216 + L3 LINE CR1 1056 1477 -100 246 326 93 29 chr6 9276945 9277117 -180002437 + MIR3 SINE MIR 8 190 -18 490 303 87 15 chr6 9278363 9278558 -180000996 + MIR SINE MIR 21 229 -33 264 59 0 0 chr6 9279152 9279186 -180000368 + (TCC)n Simple_repeat Simple_repeat 1 34 0 2202 78 13 29 chr6 9279186 9279495 -180000059 - AluSg SINE Alu -6 304 1 207 286 195 0 chr6 9279526 9279603 -179999951 + MIR SINE MIR 56 147 -115 21 0 0 0 chr6 9280299 9280320 -179999234 + AT_rich Low_complexity Low_complexity 1 21 0 276 154 0 15 chr6 9280351 9280416 -179999138 - L1PB1 LINE L1 0 6151 6088 290 331 147 22 chr6 9281481 9281665 -179997889 + MIR SINE MIR 26 232 -30 880 210 23 0 chr6 9281684 9281860 -179997694 + MER5A DNA MER1_type 10 189 0 236 391 0 13 chr6 9282021 9282172 -179997382 - MIR SINE MIR -3 259 111 297 308 8 34 chr6 9282500 9282617 -179996937 + L2 LINE L2 3200 3313 0 442 294 75 37 chr6 9282821 9283008 -179996546 - MIR3 SINE MIR -1 207 14 727 266 29 14 chr6 9283140 9283347 -179996207 + MIR SINE MIR 53 262 0 713 206 0 0 chr6 9284014 9284140 -179995414 + FLAM_C SINE Alu 5 130 -3 223 234 16 23 chr6 9284148 9284276 -179995278 + (TA)n Simple_repeat Simple_repeat 1 127 0 240 35 0 0 chr6 9285498 9285527 -179994027 + (CA)n Simple_repeat Simple_repeat 2 30 0 1585 106 4 0 chr6 9286852 9287078 -179992476 - AluSg/x SINE Alu -3 309 83 206 321 0 0 chr6 9288549 9288605 -179990949 - L2 LINE L2 -12 3301 3246 714 264 26 45 chr6 9289083 9289462 -179990092 - L1M4 LINE L1 -2523 3623 3252 195 167 0 0 chr6 9289645 9289687 -179989867 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 272 223 60 18 chr6 9289703 9289869 -179989685 + (TA)n Simple_repeat Simple_repeat 1 173 0 1465 238 108 20 chr6 9292258 9292758 -179986796 + L1M4 LINE L1 3791 4334 -1812 300 200 12 50 chr6 9292824 9292889 -179986665 - MLT1F1 LTR MaLR -452 115 52 710 62 0 71 chr6 9292889 9293001 -179986553 - L1PA7 LINE L1 0 6154 6051 300 200 12 50 chr6 9293001 9293015 -179986539 - MLT1F1 LTR MaLR -515 52 39 1742 167 31 28 chr6 9293740 9294099 -179985455 + MLT1A1 LTR MaLR 6 365 0 550 195 18 44 chr6 9294105 9294218 -179985336 - FLAM_A SINE Alu -20 122 13 500 299 79 25 chr6 9294258 9294499 -179985055 - MIR SINE MIR -5 257 4 1454 169 71 42 chr6 9295176 9295513 -179984041 - MER7A DNA MER2_type -1 345 1 396 315 136 6 chr6 9295710 9295872 -179983682 - MIR SINE MIR -75 187 5 191 290 54 21 chr6 9295931 9296024 -179983530 + MIR SINE MIR 78 173 -89 192 267 67 44 chr6 9298172 9298262 -179981292 - L2 LINE L2 -14 3258 3167 1335 236 49 3 chr6 9298293 9298658 -179980896 + L1M4 LINE L1 3537 3918 -2228 * 6168 213 48 7 chr6 9298637 9300989 -179978565 + L1MB5 LINE L1 3715 6166 -8 473 260 78 0 chr6 9301071 9301225 -179978329 - Tigger6a DNA MER2_type -1 1082 917 9461 176 26 12 chr6 9301225 9304045 -179975509 + L1PA16 LINE L1 3305 6165 -1 3607 219 54 6 chr6 9304045 9304933 -179974621 - Tigger6a DNA MER2_type -138 945 15 903 186 194 75 chr6 9305304 9305630 -179973924 + MSTD LTR MaLR 10 396 0 192 266 147 28 chr6 9305638 9305747 -179973807 + MIR SINE MIR 64 185 -77 244 300 0 0 chr6 9305785 9305855 -179973699 - L2 LINE L2 -9 3263 3194 390 217 86 9 chr6 9406132 9406261 -179873293 - MSTC LTR MaLR -258 138 1 204 111 0 0 chr6 9406270 9406306 -179873248 + (A)n Simple_repeat Simple_repeat 1 36 0 2106 130 0 10 chr6 9407166 9407467 -179872087 + AluSx SINE Alu 1 298 -14 2292 95 0 0 chr6 9408879 9409173 -179870381 - AluSg SINE Alu -16 294 1 197 389 29 29 chr6 9409252 9409391 -179870163 - MIR3 SINE MIR -66 142 4 2373 58 3 26 chr6 9410510 9410820 -179868734 + AluY SINE Alu 1 303 -8 1415 278 56 7 chr6 9410920 9411511 -179868043 + L1MCc LINE L1 875 1494 -4929 267 31 0 0 chr6 9411538 9411570 -179867984 + (TG)n Simple_repeat Simple_repeat 1 32 0 1331 169 16 4 chr6 9411586 9411828 -179867726 - MLT2D LTR ERVL -169 245 1 650 301 47 50 chr6 9411850 9412172 -179867382 + L1MCb LINE L1 245 565 -5480 622 136 41 41 chr6 9412346 9412493 -179867061 - L1MA9 LINE L1 -87 6225 6079 400 160 90 0 chr6 9412495 9412595 -179866959 + L1MA9 LINE L1 6202 6310 -2 231 325 52 45 chr6 9412918 9412999 -179866555 + MIR SINE MIR 17 101 -161 2342 108 51 14 chr6 9412999 9413350 -179866204 - THE1B LTR MaLR 0 364 1 231 325 52 45 chr6 9413350 9413422 -179866132 + MIR SINE MIR 101 171 -91 2228 247 124 20 chr6 9413542 9414946 -179864608 + L1MCb LINE L1 765 2467 -4278 1291 284 39 11 chr6 9414928 9415562 -179863992 + L1MCc LINE L1 1897 2699 -4423 * 596 222 205 10 chr6 9415683 9415971 -179863583 - L1MCa LINE L1 -4830 1596 1253 241 353 150 38 chr6 9416573 9416972 -179862582 + L2 LINE L2 2315 2758 -556 324 0 0 0 chr6 9417101 9417137 -179862417 + (CA)n Simple_repeat Simple_repeat 2 37 0 193 373 111 30 chr6 9417165 9417436 -179862118 + L2 LINE L2 2972 3264 -8 800 279 21 18 chr6 9417514 9417797 -179861757 + MLT1G LTR MaLR 10 293 -297 271 280 96 16 chr6 9417906 9418031 -179861523 + MLT1G LTR MaLR 402 536 -6 4477 116 91 127 chr6 9418102 9419682 -179859872 - pTR5 LTR ERV1 0 2438 741 2202 113 0 0 chr6 9419687 9419979 -179859575 + AluSx SINE Alu 1 292 -20 45 19 0 0 chr6 9419980 9420032 -179859522 + AT_rich Low_complexity Low_complexity 1 52 0 2480 58 0 0 chr6 9422261 9422552 -179857002 - AluY SINE Alu -20 291 1 24 32 0 0 chr6 9423169 9423200 -179856354 + AT_rich Low_complexity Low_complexity 1 31 0 983 219 159 4 chr6 9423236 9423469 -179856085 + AluSx SINE Alu 26 294 -18 22 0 0 0 chr6 9423469 9423491 -179856063 + AT_rich Low_complexity Low_complexity 1 22 0 194 347 61 38 chr6 9425250 9425593 -179853961 + L2 LINE L2 2332 2682 -632 210 71 0 0 chr6 9425781 9425809 -179853745 + (T)n Simple_repeat Simple_repeat 1 28 0 231 405 68 35 chr6 9425821 9426132 -179853422 + L2 LINE L2 2943 3263 -9 2115 125 3 0 chr6 9426148 9426445 -179853109 - AluSx SINE Alu -14 298 1 186 43 0 0 chr6 9426779 9426802 -179852752 + (TG)n Simple_repeat Simple_repeat 2 24 0 275 221 15 0 chr6 9426815 9426883 -179852671 + GA-rich Low_complexity Low_complexity 2 70 0 26 0 0 0 chr6 9427799 9427825 -179851729 + AT_rich Low_complexity Low_complexity 1 26 0 27 29 0 0 chr6 9428319 9428353 -179851201 + AT_rich Low_complexity Low_complexity 1 34 0 940 227 112 51 chr6 9428757 9429070 -179850484 - MLT1D LTR MaLR -151 354 23 853 0 0 0 chr6 9429081 9429177 -179850377 - AluYa5/8 SINE Alu 0 311 216 1135 168 17 0 chr6 9429851 9430083 -179849471 - L1MC3 LINE L1 -11 7774 7539 1522 185 176 45 chr6 9430092 9430585 -179848969 - L1MC3 LINE L1 -540 7245 6688 855 78 0 0 chr6 9430593 9430709 -179848845 + (TA)n Simple_repeat Simple_repeat 2 117 0 2382 76 6 19 chr6 9430709 9431024 -179848530 - AluY SINE Alu 0 311 1 24 0 0 0 chr6 9431033 9431057 -179848497 + AT_rich Low_complexity Low_complexity 1 24 0 304 100 80 0 chr6 9431347 9431397 -179848157 + U2 snRNA snRNA 1 54 -134 21 0 0 0 chr6 9431399 9431420 -179848134 + AT_rich Low_complexity Low_complexity 1 21 0 246 349 63 37 chr6 9431672 9431861 -179847693 - L2 LINE L2 -191 3081 2888 573 40 0 0 chr6 9431892 9431967 -179847587 + MER41A LTR ERV1 395 469 -85 5000 117 1 6 chr6 9432046 9432405 -179847149 - L1PB1 LINE L1 -1 6150 5791 351 0 0 0 chr6 9432405 9432444 -179847110 + (CAGA)n Simple_repeat Simple_repeat 2 40 0 5000 117 1 6 chr6 9432444 9432877 -179846677 - L1PB1 LINE L1 -360 5791 5362 583 79 0 0 chr6 9432877 9432966 -179846588 + L1P LINE L1 5267 5355 -796 199 241 29 176 chr6 9433036 9433206 -179846348 - MIR SINE MIR -29 233 89 22 0 0 0 chr6 9433311 9433333 -179846221 + AT_rich Low_complexity Low_complexity 1 22 0 1864 103 4 27 chr6 9433342 9433604 -179845950 + AluSx SINE Alu 44 299 -13 2005 168 5 35 chr6 9433858 9434262 -179845292 + MER57A LTR ERV1 12 403 0 2239 104 0 0 chr6 9434318 9434615 -179844939 + AluSq SINE Alu 1 297 -16 2154 109 0 3 chr6 9435216 9435510 -179844044 + AluSx SINE Alu 1 293 -19 3542 141 30 73 chr6 9436106 9436816 -179842738 - LTR58 LTR ERV1 0 679 1 230 191 32 48 chr6 9437011 9437074 -179842480 + L2 LINE L2 3191 3252 -61 204 67 0 0 chr6 9437089 9437119 -179842435 + (A)n Simple_repeat Simple_repeat 1 30 0 285 368 0 0 chr6 9437494 9437600 -179841954 - MIR SINE MIR -105 157 52 667 212 21 93 chr6 9437767 9438003 -179841551 + MER20 DNA MER1_type 1 219 0 338 207 134 0 chr6 9438170 9438252 -179841302 + MER94 DNA DNA 1 93 -41 2014 138 125 33 chr6 9439040 9439432 -179840122 - MSTA LTR MaLR 0 428 1 221 136 0 23 chr6 9439797 9439841 -179839713 + (GGGAGA)n Simple_repeat Simple_repeat 4 46 0 192 158 0 0 chr6 9440474 9440512 -179839042 + T-rich Low_complexity Low_complexity 2 39 0 25 31 0 0 chr6 9441216 9441248 -179838306 + AT_rich Low_complexity Low_complexity 1 32 0 2411 136 64 5 chr6 9441437 9441841 -179837713 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr6 9442148 9442170 -179837384 + AT_rich Low_complexity Low_complexity 1 22 0 6079 120 28 19 chr6 9442173 9443618 -179835936 + L1PA13 LINE L1 4695 6157 -6 2322 63 0 13 chr6 9444395 9444698 -179834856 - AluY SINE Alu -12 299 1 237 289 24 0 chr6 9445892 9445975 -179833579 + L2 LINE L2 3203 3287 -26 338 266 12 12 chr6 9446040 9446209 -179833345 + GA-rich Low_complexity Low_complexity 1 169 0 198 103 0 0 chr6 9446607 9446636 -179832918 + (TTCTCC)n Simple_repeat Simple_repeat 6 34 0 3324 163 56 22 chr6 9447011 9447237 -179832317 + L1PB4 LINE L1 5436 5653 -503 1706 143 0 0 chr6 9447237 9447488 -179832066 + AluSc SINE Alu 39 289 -20 3324 163 56 22 chr6 9447488 9447955 -179831599 + L1PB4 LINE L1 5653 6153 -3 702 145 0 0 chr6 9448342 9448480 -179831074 + (TG)n Simple_repeat Simple_repeat 1 138 0 1020 221 14 5 chr6 9449714 9449931 -179829623 + MER20 DNA MER1_type 1 219 0 2364 102 0 6 chr6 9450663 9450978 -179828576 - AluSq SINE Alu 0 313 1 1330 216 14 59 chr6 9452333 9452759 -179826795 - L1MA9 LINE L1 -38 6274 5868 227 143 24 0 chr6 9452763 9452805 -179826749 - L1MA9 LINE L1 -553 5618 5576 * 2318 228 8 4 chr6 9452800 9453323 -179826231 - L1 LINE L1 -1858 4288 3764 447 221 67 67 chr6 9453324 9453473 -179826081 + L2 LINE L2 3159 3307 -6 472 213 133 33 chr6 9453629 9453779 -179825775 - MIR SINE MIR -70 192 28 1947 151 148 3 chr6 9453861 9454233 -179825321 + MSTA LTR MaLR 1 426 -2 181 391 33 11 chr6 9454325 9454417 -179825137 - MIR SINE MIR -92 170 77 23 33 0 0 chr6 9454643 9454673 -179824881 + AT_rich Low_complexity Low_complexity 1 30 0 1854 166 0 34 chr6 9454748 9455068 -179824486 + AluJb SINE Alu 4 312 0 1483 206 81 7 chr6 9455131 9455492 -179824062 - MLT2B1 LTR ERVL 0 397 1 238 299 45 0 chr6 9455859 9455926 -179823628 - L2 LINE L2 -18 3295 3226 28 48 0 0 chr6 9456735 9456777 -179822777 + AT_rich Low_complexity Low_complexity 1 42 0 1304 176 16 80 chr6 9457136 9457793 -179821761 + L1MB1 LINE L1 4981 5659 -509 2321 106 3 0 chr6 9457793 9458105 -179821449 + AluSq SINE Alu 1 313 0 1304 176 16 80 chr6 9458105 9458580 -179820974 + L1MB1 LINE L1 5659 6163 -5 523 170 226 0 chr6 9459405 9459511 -179820043 + FLAM_C SINE Alu 1 130 -3 281 362 27 27 chr6 9461052 9461237 -179818317 - MIR SINE MIR -71 191 7 283 368 17 0 chr6 9461304 9461421 -179818133 + MIR3 SINE MIR 82 200 -8 227 374 24 0 chr6 9461450 9461533 -179818021 - MIR3 SINE MIR -1 207 123 941 228 10 5 chr6 9462168 9462365 -179817189 - MLT1A1 LTR MaLR 0 365 168 908 137 95 6 chr6 9462563 9462731 -179816823 - MLT1A1 LTR MaLR -180 185 3 2511 289 91 43 chr6 9462736 9463408 -179816146 + L1MCc LINE L1 96 734 -5689 1370 228 18 97 chr6 9463408 9463965 -179815589 - LTR40a LTR ERVL -2 517 5 2511 289 91 43 chr6 9463965 9464654 -179814900 + L1MCc LINE L1 734 1523 -4900 1140 261 47 46 chr6 9464770 9465379 -179814175 + L1MCc LINE L1 1605 2290 -4651 1057 55 7 7 chr6 9465379 9465525 -179814029 + (GGAA)n Simple_repeat Simple_repeat 3 148 0 1140 261 47 46 chr6 9465525 9465669 -179813885 + L1MCc LINE L1 2290 2432 -4509 306 148 0 0 chr6 9465808 9465862 -179813692 + (TAA)n Simple_repeat Simple_repeat 2 55 0 311 296 20 0 chr6 9466497 9466595 -179812959 + MIR SINE MIR 150 249 -13 680 266 142 88 chr6 9467111 9467520 -179812034 + L2 LINE L2 1982 2412 -902 23 0 0 0 chr6 9467533 9467556 -179811998 + AT_rich Low_complexity Low_complexity 1 23 0 544 257 13 41 chr6 9467884 9468137 -179811417 - L2 LINE L2 0 3313 3005 329 293 49 118 chr6 9468843 9469130 -179810424 - L2 LINE L2 -2 3311 3045 202 273 23 23 chr6 9469161 9469289 -179810265 + (TA)n Simple_repeat Simple_repeat 2 129 0 460 294 55 14 chr6 9470777 9470995 -179808559 + MER110A LTR ERV1 219 445 -23 22 35 0 0 chr6 9471991 9472020 -179807534 + AT_rich Low_complexity Low_complexity 1 29 0 335 245 43 39 chr6 9472100 9472332 -179807222 + L1M4 LINE L1 1242 1565 -5069 3054 244 82 30 chr6 9472493 9474086 -179805468 + L1MCb LINE L1 1 1735 -4829 1224 209 141 9 chr6 9474086 9474406 -179805148 + MLT1A1 LTR MaLR 4 365 0 3054 244 82 30 chr6 9474406 9474834 -179804720 + L1MCb LINE L1 1735 2139 -4425 874 163 26 0 chr6 9474857 9475010 -179804544 + MER76 LTR ERV 1 157 -531 652 314 80 36 chr6 9475730 9476141 -179803413 + L1ME LINE L1 24 452 -5618 859 299 87 22 chr6 9476165 9476188 -179803366 + L1ME LINE L1 93 113 -5967 2127 124 0 3 chr6 9476188 9476487 -179803067 - AluSx SINE Alu -14 298 1 859 299 87 22 chr6 9476487 9477691 -179801863 + L1ME LINE L1 113 1521 -4559 976 264 80 25 chr6 9477711 9478743 -179800811 - L1MCc LINE L1 -4520 2421 1246 593 219 11 11 chr6 9478758 9478936 -179800618 + CT-rich Low_complexity Low_complexity 1 178 0 570 155 50 0 chr6 9478947 9479108 -179800446 + CT-rich Low_complexity Low_complexity 2 170 0 288 338 183 21 chr6 9479178 9479462 -179800092 - L1MCc LINE L1 -5226 1197 868 702 293 103 36 chr6 9479660 9480121 -179799433 - L1MCc LINE L1 -5842 581 79 1371 163 132 0 chr6 9480121 9480274 -179799280 - AluJo SINE Alu -21 291 160 201 39 0 0 chr6 9480274 9480300 -179799254 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1371 163 132 0 chr6 9480300 9480403 -179799151 - AluJo SINE Alu -152 160 1 702 293 103 36 chr6 9480403 9480464 -179799090 - L1MCc LINE L1 -6344 79 24 6470 45 13 0 chr6 9480667 9481454 -179798100 - L1PA7 LINE L1 -12 6142 5346 551 63 25 0 chr6 9482148 9482227 -179797327 + (GAAA)n Simple_repeat Simple_repeat 1 81 0 211 308 103 17 chr6 9483031 9483148 -179796406 - MIR3 SINE MIR -9 199 73 419 280 84 109 chr6 9483203 9484370 -179795184 + L1MEc LINE L1 36 1173 -5223 408 254 31 6 chr6 9484583 9484816 -179794738 + L1MEc LINE L1 2179 4018 -2197 954 241 72 4 chr6 9485329 9485565 -179793989 + HERVL40 LTR ERVL 5279 5530 0 995 285 51 42 chr6 9485565 9485919 -179793635 + LTR40b LTR ERVL 1 357 -105 297 169 0 0 chr6 9485920 9485979 -179793575 + CT-rich Low_complexity Low_complexity 1 59 0 255 125 0 0 chr6 9485974 9486014 -179793540 + (TCCCC)n Simple_repeat Simple_repeat 2 41 0 * 504 231 9 36 chr6 9486017 9486218 -179793336 - L1MEc LINE L1 -4509 1938 1734 387 161 0 0 chr6 9486227 9486294 -179793260 + LTR40a LTR ERVL 411 519 0 1583 234 22 80 chr6 9486305 9486766 -179792788 + L1MC4a LINE L1 6187 6604 -1204 185 65 32 0 chr6 9486766 9486797 -179792757 + (TATG)n Simple_repeat Simple_repeat 4 35 0 1583 234 22 80 chr6 9486797 9486960 -179792594 + L1MC4a LINE L1 6604 6775 -1033 321 201 112 45 chr6 9487040 9487174 -179792380 - L1MEc LINE L1 -3239 2976 2834 376 191 48 0 chr6 9487179 9487263 -179792291 - L1MEc LINE L1 -4316 2080 1993 1193 299 66 42 chr6 9487373 9487767 -179791787 - L1MEc LINE L1 -4578 1818 1435 2273 115 0 0 chr6 9487767 9488079 -179791475 - AluSq SINE Alu -1 312 1 1193 299 66 42 chr6 9488079 9488658 -179790896 - L1MEc LINE L1 -4961 1435 822 422 55 0 0 chr6 9488658 9488713 -179790841 - MLT2A1 LTR ERVL 0 453 399 203 130 22 22 chr6 9488758 9488804 -179790750 + (TA)n Simple_repeat Simple_repeat 2 47 0 271 83 83 0 chr6 9488813 9488861 -179790693 - HERVL LTR ERVL -144 5510 5459 2679 88 39 5 chr6 9488893 9489277 -179790277 - MLT2A1 LTR ERVL -44 400 4 44589 68 7 8 chr6 9489280 9494939 -179784615 - HERVL-A1 LTR ERVL 0 5654 2 317 113 38 0 chr6 9494940 9494993 -179784561 - MLT2A1 LTR ERVL 0 453 399 297 230 0 0 chr6 9495013 9495191 -179784363 + (TA)n Simple_repeat Simple_repeat 1 178 0 326 194 32 0 chr6 9495192 9495444 -179784110 + (TCTA)n Simple_repeat Simple_repeat 1 260 0 380 208 0 5 chr6 949