203 171 0 0 chr4_random 323 358 -18851455 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 253 167 83 0 chr4_random 1909 1969 -18849844 - L1MA8 LINE L1 -4 6287 6223 742 249 204 0 chr4_random 2996 3281 -18848532 - MER63 DNA MER1_type -152 909 567 625 353 64 8 chr4_random 3281 3547 -18848266 + LTR16A LTR ERVL 170 450 0 2086 335 61 29 chr4_random 3600 4774 -18847039 + HERV16 LTR ERVL 75 1286 -3710 434 260 58 7 chr4_random 4792 4946 -18846867 - L1MCb LINE L1 -5177 1387 1226 2908 260 54 37 chr4_random 4960 6132 -18845681 - L1MCb LINE L1 -4857 1188 41 2296 84 0 0 chr4_random 6264 6582 -18845231 - AluY SINE Alu 0 311 1 290 296 14 42 chr4_random 6876 7018 -18844795 + LTR67 LTR ERVL 418 555 -2 1705 169 145 16 chr4_random 7151 7530 -18844283 - MSTA LTR MaLR 0 428 1 6660 67 12 0 chr4_random 8938 9893 -18841920 + L1PA7 LINE L1 5183 6148 -6 23 0 0 0 chr4_random 11915 11938 -18839875 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4_random 12004 12027 -18839786 + AT_rich Low_complexity Low_complexity 1 23 0 3113 121 34 38 chr4_random 15409 15964 -18835849 - Tigger3(Golem) DNA MER2_type -1 3028 2476 314 308 55 59 chr4_random 16634 16871 -18834942 - MIR SINE MIR -9 253 18 22 0 0 0 chr4_random 16956 16978 -18834835 + AT_rich Low_complexity Low_complexity 1 22 0 726 278 79 8 chr4_random 16992 17233 -18834580 - L1MC4a LINE L1 -1054 6754 6497 222 273 91 13 chr4_random 18312 18389 -18833424 + MIR SINE MIR 28 110 -152 404 272 34 92 chr4_random 18391 18597 -18833216 - LTR16A LTR ERVL -241 209 16 752 308 40 16 chr4_random 18798 19048 -18832765 + MIR SINE MIR 7 262 0 668 352 38 16 chr4_random 19381 19696 -18832117 - LTR16B LTR ERVL -142 322 1 1930 96 48 0 chr4_random 20896 21197 -18830616 + AluY SINE Alu 1 314 0 541 251 181 15 chr4_random 21898 22097 -18829716 + AluJb SINE Alu 25 256 -56 346 329 48 0 chr4_random 22516 22662 -18829151 + HERV16 LTR ERVL 2515 2667 -2329 223 299 0 0 chr4_random 22895 22982 -18828831 + T-rich Low_complexity Low_complexity 1 87 0 23 86 0 0 chr4_random 23229 23287 -18828526 + AT_rich Low_complexity Low_complexity 1 58 0 2042 84 0 0 chr4_random 26165 26427 -18825386 - AluY SINE Alu -15 296 35 207 91 45 23 chr4_random 26518 26562 -18825251 + A-rich Low_complexity Low_complexity 2 46 0 358 202 71 30 chr4_random 26607 26706 -18825107 + MER58B DNA MER1_type 239 341 0 4815 151 47 9 chr4_random 27464 28106 -18823707 - L1PA16 LINE L1 -5 6161 5476 203 0 37 0 chr4_random 28106 28133 -18823680 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 4815 151 47 9 chr4_random 28133 28365 -18823448 - L1PA16 LINE L1 -690 5476 5254 6201 227 23 23 chr4_random 28366 28893 -18822920 + L1 LINE L1 3637 4163 -1983 1982 103 0 0 chr4_random 28893 29164 -18822649 + AluY SINE Alu 39 309 -2 1944 115 10 0 chr4_random 29166 29462 -18822351 + L1PA8 LINE L1 5868 6166 -6 6201 227 23 23 chr4_random 29462 30555 -18821258 + L1 LINE L1 4163 5260 -886 232 330 19 0 chr4_random 31369 31472 -18820341 + (TA)n Simple_repeat Simple_repeat 1 105 0 190 400 0 12 chr4_random 32191 32271 -18819542 - L2 LINE L2 -214 3058 2980 347 263 144 57 chr4_random 32406 32600 -18819213 + MIR SINE MIR 52 262 0 246 62 0 0 chr4_random 33380 33412 -18818401 + (A)n Simple_repeat Simple_repeat 1 32 0 2274 102 0 3 chr4_random 33791 34094 -18817719 + AluSg SINE Alu 1 302 -8 25 31 0 0 chr4_random 35543 35575 -18816238 + AT_rich Low_complexity Low_complexity 1 32 0 2191 93 3 10 chr4_random 35964 36288 -18815525 + AluY SINE Alu 1 311 0 36 77 0 0 chr4_random 36605 36683 -18815130 + AT_rich Low_complexity Low_complexity 1 78 0 21 0 0 0 chr4_random 37516 37537 -18814276 + AT_rich Low_complexity Low_complexity 1 21 0 381 292 96 47 chr4_random 38386 38749 -18813064 - L1MC/D LINE L1 -2038 5770 5390 1768 160 0 0 chr4_random 38753 39034 -18812779 + AluY SINE Alu 1 281 -30 2404 70 0 19 chr4_random 39869 40185 -18811628 - AluY SINE Alu -1 310 1 343 263 131 31 chr4_random 40397 40656 -18811157 + L1ME1 LINE L1 5865 6152 -12 235 95 14 54 chr4_random 43841 43915 -18807898 + (TA)n Simple_repeat Simple_repeat 2 72 0 273 212 15 0 chr4_random 46245 46311 -18805502 + (TTCA)n Simple_repeat Simple_repeat 3 69 0 412 209 51 70 chr4_random 47497 47655 -18804158 + MER106B DNA MER1_type 904 1058 -1 1906 142 17 53 chr4_random 48302 48351 -18803462 - MER7A DNA MER2_type -2693 345 296 1593 85 0 0 chr4_random 48351 48552 -18803261 + AluSc SINE Alu 93 293 -16 2330 56 0 7 chr4_random 48556 48913 -18802900 + AluY SINE Alu 1 355 0 1906 142 17 53 chr4_random 48913 49216 -18802597 - MER7A DNA MER2_type -2745 293 2 3793 98 11 5 chr4_random 51431 51982 -18799831 - MER41A LTR ERV1 0 554 1 1286 223 6 61 chr4_random 52015 52342 -18799471 + MER67D LTR ERV1 3 311 -203 548 293 66 0 chr4_random 52418 52585 -18799228 + MER67D LTR ERV1 329 506 -8 1666 186 3 0 chr4_random 52672 52962 -18798851 - AluJo SINE Alu -12 300 10 1765 179 45 6 chr4_random 53000 53330 -18798483 - MER61A LTR ERV1 0 343 1 299 227 101 17 chr4_random 53501 53620 -18798193 - LTR48 LTR ERV1 -50 737 609 420 205 80 9 chr4_random 53661 53773 -18798040 - LTR48 LTR ERV1 -312 475 356 3128 155 49 0 chr4_random 53822 54389 -18797424 - LTR49 LTR ERV1 0 595 1 1781 161 45 25 chr4_random 54392 54747 -18797066 + THE1C LTR MaLR 14 375 0 562 178 222 0 chr4_random 54774 54909 -18796904 - MER34C LTR ERV1 -391 194 30 2844 134 60 45 chr4_random 54959 55562 -18796251 + MER4B LTR ERV1 1 779 0 367 299 71 0 chr4_random 55563 55717 -18796096 + L1ME LINE L1 5536 5700 -421 2698 179 90 47 chr4_random 55940 56618 -18795195 - MER39 LTR ERV1 0 707 1 294 73 0 0 chr4_random 57651 57692 -18794121 + (CA)n Simple_repeat Simple_repeat 2 42 0 744 232 35 142 chr4_random 59139 59647 -18792166 - MLT1C LTR MaLR -8 459 6 479 200 44 0 chr4_random 59791 59881 -18791932 - MER58B DNA MER1_type -3 338 245 22 0 0 0 chr4_random 59985 60007 -18791806 + AT_rich Low_complexity Low_complexity 1 22 0 284 319 43 0 chr4_random 60179 60248 -18791565 - MER45 DNA AcHobo -968 72 1 216 0 0 0 chr4_random 60763 60787 -18791026 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 665 219 16 154 chr4_random 62935 63181 -18788632 + MER20 DNA MER1_type 1 212 -7 30 27 0 0 chr4_random 63437 63474 -18788339 + AT_rich Low_complexity Low_complexity 1 37 0 2096 128 0 13 chr4_random 63482 63787 -18788026 + AluSx SINE Alu 1 301 -11 183 129 0 0 chr4_random 64731 64762 -18787051 + (TG)n Simple_repeat Simple_repeat 2 32 0 257 214 48 10 chr4_random 64765 64868 -18786945 + (TA)n Simple_repeat Simple_repeat 1 107 0 21 0 0 0 chr4_random 65000 65021 -18786792 + AT_rich Low_complexity Low_complexity 1 21 0 1216 137 28 5 chr4_random 66405 66617 -18785196 - MER67C LTR ERV1 0 710 494 * 1404 150 80 18 chr4_random 66612 66886 -18784927 - MER7A DNA MER2_type -56 290 2 2202 111 7 0 chr4_random 66983 67289 -18784524 + AluSq SINE Alu 1 308 -5 737 236 128 44 chr4_random 67662 68006 -18783807 - MLT1A2 LTR MaLR 0 374 2 190 27 0 81 chr4_random 68454 68491 -18783322 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 27 0 0 0 chr4_random 68876 68903 -18782910 + AT_rich Low_complexity Low_complexity 1 27 0 2464 74 0 0 chr4_random 69410 69721 -18782092 + AluY SINE Alu 1 311 0 1920 222 108 12 chr4_random 69820 70053 -18781760 - L1MA5 LINE L1 -233 6067 5858 363 23 0 0 chr4_random 70053 70097 -18781716 + (CA)n Simple_repeat Simple_repeat 1 44 0 1920 222 108 12 chr4_random 70097 70373 -18781440 - L1MA5 LINE L1 -442 5858 5509 290 56 0 0 chr4_random 70391 70427 -18781386 + L1M2 LINE L1 5440 5475 -816 1386 245 86 17 chr4_random 70432 70909 -18780904 - LTR48B LTR ERV1 -5 639 130 268 299 0 37 chr4_random 70890 70997 -18780816 - MER34 LTR ERV1 -437 105 3 * 1353 173 44 2 chr4_random 70999 71326 -18780487 - L1MA5 LINE L1 -743 5403 5101 3652 131 5 9 chr4_random 72423 72986 -18778827 + THE1C-int LTR MaLR 1020 1580 0 2195 118 8 70 chr4_random 72986 73339 -18778474 + THE1C LTR MaLR 1 328 -47 2391 81 0 3 chr4_random 73339 73648 -18778165 - AluY SINE Alu -3 308 1 2195 118 8 70 chr4_random 73648 73694 -18778119 + THE1C LTR MaLR 328 375 0 1132 232 23 94 chr4_random 75629 76022 -18775791 - MLT1A1 LTR MaLR 0 365 1 1473 203 43 43 chr4_random 76295 76664 -18775149 - MLT1B LTR MaLR 0 390 22 2845 167 30 19 chr4_random 77107 77635 -18774178 - MER67C LTR ERV1 -17 693 160 913 215 0 40 chr4_random 77694 77917 -18773896 - L1MA7 LINE L1 -49 6242 6029 1971 174 32 22 chr4_random 77925 78327 -18773486 - L1MA7 LINE L1 -400 5891 5486 4993 195 21 31 chr4_random 78340 79548 -18772265 - L1MA7 LINE L1 -889 5257 4061 375 176 27 0 chr4_random 79666 79740 -18772073 - L1MA7 LINE L1 -2295 3851 3776 2646 201 140 22 chr4_random 80176 80928 -18770885 - L1MA7 LINE L1 -2356 3790 2931 2471 98 8 11 chr4_random 80928 81284 -18770529 - THE1A LTR MaLR 0 355 1 2646 201 140 22 chr4_random 81284 81354 -18770459 - L1MA7 LINE L1 -3215 2931 2871 2014 133 0 24 chr4_random 81665 81958 -18769855 + AluSx SINE Alu 1 286 -26 1531 271 159 24 chr4_random 82349 83496 -18768317 + Zaphod DNA AcHobo 124 1426 -2605 2057 136 7 10 chr4_random 84128 84430 -18767383 - AluSq SINE Alu -12 301 1 28 71 0 0 chr4_random 84611 84667 -18767146 + AT_rich Low_complexity Low_complexity 1 56 0 648 209 15 22 chr4_random 84775 84909 -18766904 + FLAM_A SINE Alu 1 133 0 2658 122 25 0 chr4_random 84989 85390 -18766423 + L1PA10 LINE L1 5545 5955 -213 1979 116 42 0 chr4_random 85423 85707 -18766106 + AluSx SINE Alu 14 309 -3 2350 68 7 7 chr4_random 85902 86198 -18765615 + AluSg SINE Alu 1 296 -14 432 0 0 0 chr4_random 87026 87074 -18764739 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 30 0 0 0 chr4_random 87150 87180 -18764633 + AT_rich Low_complexity Low_complexity 1 30 0 354 45 0 0 chr4_random 87382 87426 -18764387 + (TG)n Simple_repeat Simple_repeat 1 44 0 441 291 76 49 chr4_random 87662 87885 -18763928 - MLT1J LTR MaLR -271 240 12 624 124 44 35 chr4_random 88165 88278 -18763535 - L1PA11 LINE L1 -2 6172 6059 3221 108 77 1 chr4_random 88278 88936 -18762877 - L1PA11 LINE L1 -358 5810 5107 198 240 188 10 chr4_random 89099 89195 -18762618 + MIR SINE MIR 84 196 -66 26 64 0 0 chr4_random 89501 89548 -18762265 + AT_rich Low_complexity Low_complexity 1 47 0 3098 171 29 0 chr4_random 89551 90042 -18761771 + L1PA12 LINE L1 1 505 -7076 * 7491 139 13 5 chr4_random 90031 91299 -18760514 + L1PA12 LINE L1 1938 3220 -4364 3733 99 14 23 chr4_random 91294 91849 -18759964 + L1PA14 LINE L1 5500 6049 -112 * 721 119 25 0 chr4_random 91980 92098 -18759715 + L1PA14 LINE L1 6038 6158 -3 810 310 63 59 chr4_random 92378 92952 -18758861 + L1PA13 LINE L1 1 576 -6211 358 344 16 8 chr4_random 93015 93143 -18758670 + L1PA13 LINE L1 1383 1511 -5276 4795 166 17 43 chr4_random 93983 94020 -18757793 + L1PA16 LINE L1 5004 5040 -1126 1927 87 16 0 chr4_random 94020 94339 -18757474 + AluSx SINE Alu 27 349 0 4795 166 17 43 chr4_random 94339 95481 -18756332 + L1PA16 LINE L1 5040 6166 0 298 350 184 0 chr4_random 96628 96791 -18755022 + MIR SINE MIR 40 232 -30 25 31 0 0 chr4_random 97202 97234 -18754579 + AT_rich Low_complexity Low_complexity 1 32 0 715 156 251 11 chr4_random 97327 97506 -18754307 - L1MC1 LINE L1 -30 6303 6082 341 297 79 30 chr4_random 97717 97882 -18753931 + MIR SINE MIR 77 249 -13 2441 71 0 3 chr4_random 98285 98595 -18753218 + AluY SINE Alu 1 309 -2 22 0 0 0 chr4_random 98637 98659 -18753154 + AT_rich Low_complexity Low_complexity 1 22 0 270 309 146 0 chr4_random 98839 98949 -18752864 - L2 LINE L2 -1 3312 3187 318 221 47 35 chr4_random 99049 99135 -18752678 - L2 LINE L2 -2 3311 3225 897 303 119 11 chr4_random 100072 100451 -18751362 + LTR16A LTR ERVL 23 442 -8 5078 125 48 19 chr4_random 101165 101770 -18750043 - Tigger3b DNA MER2_type -1821 1207 567 1674 115 127 0 chr4_random 101770 102030 -18749783 + AluSg SINE Alu 1 293 -7 5078 125 48 19 chr4_random 102030 102341 -18749472 - Tigger3b DNA MER2_type -2461 567 266 2493 90 8 6 chr4_random 102341 102695 -18749118 - THE1A LTR MaLR 0 355 1 393 276 55 8 chr4_random 103976 104103 -18747710 + MIR SINE MIR 127 259 -3 24 0 0 0 chr4_random 104355 104379 -18747434 + AT_rich Low_complexity Low_complexity 1 24 0 6533 76 4 61 chr4_random 104872 105846 -18745967 - L1PA7 LINE L1 0 6154 5187 2650 84 3 3 chr4_random 106221 106576 -18745237 - THE1A LTR MaLR 0 355 1 5171 162 13 45 chr4_random 106576 107630 -18744183 - THE1A-int LTR MaLR 0 1580 560 2597 86 11 0 chr4_random 108680 109031 -18742782 + THE1A LTR MaLR 1 355 0 4620 134 12 25 chr4_random 109031 109836 -18741977 + THE1A-int LTR MaLR 1 795 -785 226 388 31 0 chr4_random 110335 110433 -18741380 + MLT1J LTR MaLR 147 247 -264 22 70 0 0 chr4_random 110680 110723 -18741090 + AT_rich Low_complexity Low_complexity 1 43 0 2285 95 7 0 chr4_random 110727 111032 -18740781 + AluY SINE Alu 1 307 -4 789 343 67 29 chr4_random 112120 112944 -18738869 + HERV16 LTR ERVL 1095 2012 -2984 1094 137 22 0 chr4_random 113908 114090 -18737723 - L1MA2 LINE L1 0 6304 6119 1621 176 0 4 chr4_random 114428 114701 -18737112 - AluSx SINE Alu -39 273 2 21 0 0 0 chr4_random 114962 114983 -18736830 + AT_rich Low_complexity Low_complexity 1 21 0 225 375 70 8 chr4_random 115782 115910 -18735903 - L2 LINE L2 0 3313 3178 242 347 18 42 chr4_random 116335 116502 -18735311 + L2 LINE L2 2185 2347 -967 186 43 0 0 chr4_random 116504 116527 -18735286 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 2221 109 142 8 chr4_random 116619 117014 -18734799 + LTR7 LTR ERV1 1 448 -2 189 178 0 0 chr4_random 117044 117089 -18734724 + CT-rich Low_complexity Low_complexity 1 45 0 486 33 0 0 chr4_random 117089 117149 -18734664 + (TG)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr4_random 117295 117317 -18734496 + AT_rich Low_complexity Low_complexity 1 22 0 236 267 23 35 chr4_random 118622 118708 -18733105 + GA-rich Low_complexity Low_complexity 4 88 0 3975 161 10 9 chr4_random 119366 120050 -18731763 - MER50 LTR ERV1 -49 685 1 905 225 40 18 chr4_random 120836 121058 -18730755 + MLT1E1 LTR MaLR 5 231 -423 211 308 100 39 chr4_random 121207 121337 -18730476 - L2 LINE L2 -376 2938 2801 213 246 16 0 chr4_random 121499 121560 -18730253 + T-rich Low_complexity Low_complexity 1 62 0 1813 241 60 20 chr4_random 121738 122190 -18729623 + MLT2B1 LTR ERVL 8 477 -43 5432 188 19 16 chr4_random 122361 123507 -18728306 - L1MC1 LINE L1 0 6333 5186 1620 170 0 0 chr4_random 124737 124990 -18726823 + AluSx SINE Alu 34 286 -26 453 209 9 55 chr4_random 124999 125109 -18726704 + AluSg/x SINE Alu 181 285 -25 22 0 0 0 chr4_random 125321 125343 -18726470 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr4_random 125519 125566 -18726247 + AT_rich Low_complexity Low_complexity 1 47 0 338 342 6 13 chr4_random 126102 126260 -18725553 + (CATATA)n Simple_repeat Simple_repeat 5 161 0 754 214 7 0 chr4_random 126652 126818 -18724995 - FRAM SINE Alu 0 167 1 397 287 63 21 chr4_random 126943 127086 -18724727 - L2 LINE L2 0 3313 3165 851 0 0 0 chr4_random 127105 127199 -18724614 - AluYa5/8 SINE Alu -14 297 204 216 333 0 0 chr4_random 127207 127270 -18724543 - L2 LINE L2 -243 3070 3008 245 274 14 41 chr4_random 127494 127567 -18724246 + MLT1E1 LTR MaLR 204 274 -281 497 257 21 96 chr4_random 127677 127864 -18723949 + MER45A DNA AcHobo 1 173 -5 21 0 0 0 chr4_random 128547 128568 -18723245 + AT_rich Low_complexity Low_complexity 1 21 0 206 245 0 20 chr4_random 129084 129133 -18722680 + MIR SINE MIR 98 145 -117 361 337 53 34 chr4_random 129242 129561 -18722252 + L2 LINE L2 2738 3057 -256 304 242 20 30 chr4_random 129594 129693 -18722120 + L1MC4 LINE L1 6606 6703 -1339 280 145 16 16 chr4_random 129696 129758 -18722055 + (TA)n Simple_repeat Simple_repeat 2 63 0 321 337 99 51 chr4_random 129870 130164 -18721649 + MLT1H LTR MaLR 39 346 -203 351 274 111 17 chr4_random 131274 131391 -18720422 - L2 LINE L2 -3 3310 3183 290 342 0 0 chr4_random 131527 131603 -18720210 - MER5A DNA MER1_type -104 85 10 244 325 214 0 chr4_random 131814 131931 -18719882 + MER5A DNA MER1_type 47 188 -1 267 363 0 0 chr4_random 132453 132544 -18719269 + MER5A DNA MER1_type 9 99 -90 332 294 0 28 chr4_random 132605 132714 -18719099 - MER5A DNA MER1_type -80 109 4 243 0 0 0 chr4_random 132917 132944 -18718869 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2376 244 51 26 chr4_random 133160 133410 -18718403 + L1MDa LINE L1 1664 1906 -4634 623 189 90 0 chr4_random 133410 133532 -18718281 + FLAM_A SINE Alu 1 133 0 2376 244 51 26 chr4_random 133532 134098 -18717715 + L1MDa LINE L1 1906 2501 -4039 1434 194 138 0 chr4_random 134655 134975 -18716838 - MSTD LTR MaLR -32 364 1 1256 74 17 0 chr4_random 135213 135389 -18716424 - L1PA7 LINE L1 -1 6153 5975 285 181 309 11 chr4_random 136042 136136 -18715677 + LTR37B LTR ERV1 56 177 -291 587 329 140 3 chr4_random 136167 136489 -18715324 + L2 LINE L2 2866 3231 -82 214 291 0 0 chr4_random 136840 136895 -18714918 - L2 LINE L2 0 3272 3218 296 311 67 62 chr4_random 137156 137210 -18714603 + L2 LINE L2 3120 3172 -141 2027 121 7 10 chr4_random 137210 137507 -18714306 + AluSx SINE Alu 1 296 -16 296 311 67 62 chr4_random 137507 137645 -18714168 + L2 LINE L2 3172 3313 0 1317 249 33 16 chr4_random 137871 138237 -18713576 + MLT1A2 LTR MaLR 1 372 -2 246 301 34 57 chr4_random 138266 138428 -18713385 + MLT1J1 LTR MaLR 36 231 -280 230 305 132 41 chr4_random 138453 138793 -18713020 - LTR16A1 LTR ERVL -9 441 73 205 263 95 44 chr4_random 139972 140109 -18711704 + MIR SINE MIR 119 262 0 1661 185 79 6 chr4_random 140614 140954 -18710859 + MLT1A1 LTR MaLR 1 365 0 1641 193 16 10 chr4_random 141657 141968 -18709845 - MLT1A1 LTR MaLR 0 365 53 2180 166 43 0 chr4_random 142016 142384 -18709429 + MSTA LTR MaLR 1 384 -44 265 209 45 30 chr4_random 142385 142452 -18709361 + (TCTCTG)n Simple_repeat Simple_repeat 4 71 0 507 342 149 22 chr4_random 142456 142530 -18709283 + L2 LINE L2 2469 2532 -781 1320 133 41 0 chr4_random 142530 142748 -18709065 - MER30 DNA MER1_type 0 230 4 507 342 149 22 chr4_random 142748 143414 -18708399 + L2 LINE L2 2532 3313 0 21 57 0 0 chr4_random 143812 143847 -18707966 + AT_rich Low_complexity Low_complexity 1 35 0 703 174 57 113 chr4_random 144200 144430 -18707383 - MER20 DNA MER1_type 0 219 3 242 320 14 33 chr4_random 145301 145430 -18706383 - MIR SINE MIR -27 181 53 2621 137 121 0 chr4_random 145745 146192 -18705621 + MER61D LTR ERV1 1 501 0 298 288 0 0 chr4_random 146232 146312 -18705501 + (TA)n Simple_repeat Simple_repeat 1 80 0 230 242 20 141 chr4_random 146683 146832 -18704981 + L2 LINE L2 2927 3057 -256 21 57 0 0 chr4_random 147452 147487 -18704326 + AT_rich Low_complexity Low_complexity 1 35 0 194 258 15 83 chr4_random 147769 147901 -18703912 - MIR SINE MIR -18 244 122 5049 211 34 14 chr4_random 148675 150138 -18701675 + L1MC1 LINE L1 4834 6317 -16 294 273 34 19 chr4_random 150312 150490 -18701323 + MER41B LTR ERV1 112 426 -209 193 29 59 0 chr4_random 152689 152723 -18699090 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 183 298 0 0 chr4_random 152819 152866 -18698947 - L2 LINE L2 -1503 1811 1765 970 219 97 83 chr4_random 153881 154321 -18697492 - MER66A LTR ERV1 -11 467 102 2042 167 26 0 chr4_random 154361 154703 -18697110 - MER66A-int LTR ERV1 -2 6674 6324 1169 179 25 20 chr4_random 154786 155063 -18696750 - MER66-int LTR ERV1 -1580 6176 4604 370 220 110 9 chr4_random 155091 155200 -18696613 - MER4D LTR ERV1 -712 160 41 1591 187 46 90 chr4_random 155200 156213 -18695600 - MER66-int LTR ERV1 -2253 4423 2943 1484 216 76 15 chr4_random 156214 156543 -18695270 - MER66-int LTR ERV1 -3226 3450 3102 241 239 0 42 chr4_random 156543 156614 -18695199 + AluJ/monomer SINE Alu 235 302 0 1203 210 80 126 chr4_random 156712 157222 -18694591 + MER67D LTR ERV1 25 511 -3 25 31 0 0 chr4_random 157564 157596 -18694217 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr4_random 158330 158357 -18693456 + AT_rich Low_complexity Low_complexity 1 27 0 365 298 26 48 chr4_random 158367 158639 -18693174 - L1ME4a LINE L1 -294 5827 5562 184 229 21 146 chr4_random 158683 158779 -18693034 - L2 LINE L2 -16 3256 3173 27 29 0 0 chr4_random 159360 159394 -18692419 + AT_rich Low_complexity Low_complexity 1 34 0 369 216 75 75 chr4_random 159753 159787 -18692026 - L1MA10 LINE L1 -27 6307 6274 3574 258 70 52 chr4_random 159787 160525 -18691288 - L1ME1 LINE L1 -44 6122 5399 616 97 39 0 chr4_random 160525 160628 -18691185 - L1PA14 LINE L1 0 6161 6055 3574 258 70 52 chr4_random 160628 160941 -18690872 - L1ME1 LINE L1 -767 5399 5093 2075 126 52 25 chr4_random 160941 161306 -18690507 + THE1C LTR MaLR 1 375 0 3574 258 70 52 chr4_random 161306 161729 -18690084 - L1ME1 LINE L1 -1073 5093 4679 1941 168 10 39 chr4_random 161729 162115 -18689698 + THE1C LTR MaLR 1 375 0 3574 258 70 52 chr4_random 162115 163168 -18688645 - L1ME1 LINE L1 -1487 4679 3554 353 329 136 14 chr4_random 163176 163456 -18688357 + L2 LINE L2 1642 1955 -1359 1243 153 5 9 chr4_random 163456 163671 -18688142 - L1MC1 LINE L1 0 6333 6120 575 184 0 0 chr4_random 163671 163769 -18688044 - AluJb SINE Alu -11 301 204 8200 239 34 13 chr4_random 163793 167024 -18684789 - L1MC1 LINE L1 -200 6133 2709 500 284 118 71 chr4_random 167160 167751 -18684062 - L1MC1 LINE L1 -3329 2817 2199 22 0 0 0 chr4_random 168355 168377 -18683436 + AT_rich Low_complexity Low_complexity 1 22 0 409 297 13 39 chr4_random 168645 168800 -18683013 + MIR SINE MIR 84 234 -28 1148 199 39 98 chr4_random 168809 169297 -18682516 + LTR37B LTR ERV1 10 468 0 26 30 0 0 chr4_random 169412 169445 -18682368 + AT_rich Low_complexity Low_complexity 1 33 0 313 246 0 0 chr4_random 169980 170041 -18681772 + AluJ/FRAM SINE Alu 233 293 -9 300 353 132 24 chr4_random 170576 170956 -18680857 + L2 LINE L2 2889 3309 -4 262 331 34 47 chr4_random 171500 171648 -18680165 - MIR SINE MIR -30 232 87 306 67 0 0 chr4_random 171809 171854 -18679959 + (TG)n Simple_repeat Simple_repeat 2 46 0 1026 211 5 140 chr4_random 171942 172205 -18679608 - MLT1A1 LTR MaLR 0 365 179 1244 212 3 39 chr4_random 172205 172511 -18679302 - AluJb SINE Alu -7 295 1 1026 211 5 140 chr4_random 172511 172669 -18679144 - MLT1A1 LTR MaLR -186 179 1 221 261 217 26 chr4_random 172961 173076 -18678737 - MIR SINE MIR 0 262 126 579 218 98 60 chr4_random 174822 175056 -18676757 - MER5C DNA MER1_type 0 324 82 2752 261 37 21 chr4_random 175068 176289 -18675524 - L1ME LINE L1 -696 5535 4299 295 282 26 60 chr4_random 176347 176464 -18675349 + LTR16A LTR ERVL 60 172 -278 248 213 27 53 chr4_random 176622 176697 -18675116 + LTR16A1 LTR ERVL 379 451 -6 416 340 25 0 chr4_random 176745 176989 -18674824 - L1ME LINE L1 -1956 4259 4010 444 319 52 47 chr4_random 177049 177585 -18674228 - L1ME LINE L1 -5579 817 279 2257 99 0 10 chr4_random 178740 179063 -18672750 + AluSg SINE Alu 1 310 0 3953 195 25 7 chr4_random 179368 180213 -18671600 + L1MB2 LINE L1 5310 6169 -2 2081 113 10 13 chr4_random 181651 181952 -18669861 - AluSq SINE Alu -11 302 3 189 107 0 0 chr4_random 181958 181986 -18669827 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 563 260 83 28 chr4_random 183139 183320 -18668493 + MIR SINE MIR 72 262 0 250 319 11 11 chr4_random 183489 183583 -18668230 - MIR3 SINE MIR -39 169 76 2698 287 72 6 chr4_random 183616 183808 -18668005 - MER50 LTR ERV1 -35 699 521 1779 109 0 30 chr4_random 183808 184073 -18667740 - AluSc SINE Alu -52 257 1 2698 287 72 6 chr4_random 184073 184536 -18667277 - MER50 LTR ERV1 -213 521 1 1302 116 20 15 chr4_random 184778 184976 -18666837 + AluSg/x SINE Alu 95 293 -19 422 181 21 0 chr4_random 186852 186946 -18664867 + GA-rich Low_complexity Low_complexity 3 98 0 1085 263 52 44 chr4_random 187287 187744 -18664069 - LTR40a LTR ERVL 0 519 59 1837 318 62 42 chr4_random 188179 189141 -18662672 + HERV16 LTR ERVL 499 1480 -3516 819 298 103 16 chr4_random 189596 189908 -18661905 + LTR16A LTR ERVL 112 450 0 219 372 29 29 chr4_random 189993 190165 -18661648 - L2 LINE L2 -665 2649 2478 2476 50 0 0 chr4_random 190281 190579 -18661234 + AluY SINE Alu 1 298 -13 5093 190 15 2 chr4_random 192144 193148 -18658665 + L1PA13 LINE L1 3744 4760 -1386 5307 126 45 3 chr4_random 193248 194205 -18657608 + L1PA13 LINE L1 5174 6163 0 286 309 57 16 chr4_random 194375 194498 -18657315 + MIR SINE MIR 33 160 -102 615 301 54 71 chr4_random 196539 197146 -18654667 + L1MEc LINE L1 876 1472 -4924 506 133 11 0 chr4_random 197214 197304 -18654509 + GA-rich Low_complexity Low_complexity 4 94 0 317 338 96 13 chr4_random 197320 197477 -18654336 + L1MEc LINE L1 1511 1680 -4716 3904 134 45 97 chr4_random 198517 199490 -18652323 + Tigger3b DNA MER2_type 10 932 -299 400 330 57 62 chr4_random 199659 199681 -18652132 - MIR SINE MIR -30 232 211 2085 73 0 0 chr4_random 199681 199942 -18651871 - AluY SINE Alu -50 261 1 400 330 57 62 chr4_random 199942 200146 -18651667 - MIR SINE MIR -51 211 7 388 213 53 0 chr4_random 200256 200331 -18651482 - Tigger5 DNA MER2_type -2244 79 1 503 272 179 0 chr4_random 200331 200515 -18651298 - L2 LINE L2 -431 2883 2667 729 164 23 23 chr4_random 251486 251614 -18600199 + FLAM_C SINE Alu 6 133 -10 201 255 0 0 chr4_random 251693 251740 -18600073 + (TAG)n Simple_repeat Simple_repeat 3 49 0 2113 99 7 7 chr4_random 251870 252173 -18599640 - AluSc SINE Alu -6 303 1 1385 112 0 54 chr4_random 252173 252396 -18599417 - MER4D LTR ERV1 -692 211 1 244 253 71 50 chr4_random 252435 252534 -18599279 + MER91C DNA MER1_type 37 137 -3 1666 222 55 26 chr4_random 252736 252798 -18599015 - MSTD LTR MaLR -6 390 331 1549 134 90 4 chr4_random 252798 253075 -18598738 + AluSx SINE Alu 1 301 -11 1666 222 55 26 chr4_random 253075 253391 -18598422 - MSTD LTR MaLR -65 331 1 566 346 31 11 chr4_random 253694 253954 -18597859 + L2 LINE L2 1407 1671 -1643 2104 234 43 16 chr4_random 253957 254444 -18597369 + MLT1D LTR MaLR 6 505 0 1904 306 145 38 chr4_random 254448 255620 -18596193 + L2 LINE L2 1669 2965 -349 31 0 0 0 chr4_random 255626 255657 -18596156 + AT_rich Low_complexity Low_complexity 1 31 0 330 332 154 4 chr4_random 256873 257120 -18594693 + L2 LINE L2 2046 2329 -985 338 266 55 73 chr4_random 258538 258756 -18593057 - MER112 DNA MER1_type -9 251 38 395 342 9 22 chr4_random 258961 259189 -18592624 - MLT1L LTR MaLR -388 227 3 1379 268 97 23 chr4_random 259211 259932 -18591881 - L1ME1 LINE L1 -2 7595 6813 1755 256 111 46 chr4_random 259985 261385 -18590428 - L1ME1 LINE L1 -2168 5397 3907 207 0 0 0 chr4_random 261399 261422 -18590391 + (TA)n Simple_repeat Simple_repeat 1 23 0 437 229 139 19 chr4_random 261437 261599 -18590214 - L1ME1 LINE L1 -4612 2953 2857 21 71 0 0 chr4_random 261755 261797 -18590016 + AT_rich Low_complexity Low_complexity 1 42 0 24 32 0 0 chr4_random 263379 263410 -18588403 + AT_rich Low_complexity Low_complexity 1 31 0 471 113 0 0 chr4_random 264445 264516 -18587297 + (TA)n Simple_repeat Simple_repeat 1 71 0 1987 96 17 7 chr4_random 264518 264809 -18587004 - AluSp SINE Alu -19 294 1 202 284 0 45 chr4_random 264844 264911 -18586902 - MIR SINE MIR -35 227 164 8867 237 27 14 chr4_random 265742 268215 -18583598 - L1 LINE L1 -1439 4707 2202 2288 109 0 3 chr4_random 268389 268701 -18583112 + AluY SINE Alu 1 311 0 8387 50 20 1 chr4_random 269310 270361 -18581452 + MER11C LTR ERVK 1 1071 0 1281 96 0 28 chr4_random 270649 270826 -18580987 + AluY SINE Alu 3 174 -137 1766 260 41 34 chr4_random 270927 270997 -18580816 + MER63C DNA MER1_type 272 340 -720 2728 13 0 0 chr4_random 270997 271298 -18580515 + AluYa5 SINE Alu 1 301 -10 1766 260 41 34 chr4_random 271298 271881 -18579932 + MER63C DNA MER1_type 340 930 0 283 378 37 7 chr4_random 271991 272126 -18579687 - MLT1K LTR MaLR -350 238 100 185 292 67 33 chr4_random 272248 272368 -18579445 - MIR SINE MIR -14 248 125 329 115 148 0 chr4_random 272412 272473 -18579340 - MADE1 DNA Mariner 0 80 11 32 67 0 0 chr4_random 273637 273697 -18578116 + AT_rich Low_complexity Low_complexity 1 60 0 7477 22 13 4 chr4_random 275213 276209 -18575604 - L1PA3 LINE L1 0 6155 5173 907 241 34 8 chr4_random 276903 277168 -18574645 + LTR37B LTR ERV1 173 444 -24 3390 135 138 24 chr4_random 277330 278035 -18573778 - LTR1 LTR ERV1 0 785 1 244 218 40 97 chr4_random 281861 281985 -18569828 - MIR3 SINE MIR -6 202 86 214 279 81 54 chr4_random 282475 282586 -18569227 + L2 LINE L2 3145 3258 -14 279 271 93 28 chr4_random 283984 284091 -18567722 + L3b LINE CR1 1206 1319 -264 446 319 45 39 chr4_random 286138 286194 -18565619 + MLT1I LTR MaLR 59 113 -296 1316 212 43 58 chr4_random 286194 286439 -18565374 - MLT1B LTR MaLR 0 390 152 2156 61 43 4 chr4_random 286439 286719 -18565094 + AluY SINE Alu 1 291 -20 1316 212 43 58 chr4_random 286719 286869 -18564944 - MLT1B LTR MaLR -238 152 1 446 319 45 39 chr4_random 286869 287147 -18564666 + MLT1I LTR MaLR 113 395 -14 210 208 0 0 chr4_random 288237 288290 -18563523 + (TATG)n Simple_repeat Simple_repeat 1 53 0 210 231 0 19 chr4_random 288437 288489 -18563324 + CT-rich Low_complexity Low_complexity 2 52 0 237 65 0 0 chr4_random 288500 288531 -18563282 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 78 0 0 chr4_random 289082 289133 -18562680 + AT_rich Low_complexity Low_complexity 1 51 0 217 215 13 13 chr4_random 290260 290339 -18561474 + (TA)n Simple_repeat Simple_repeat 1 79 0 381 58 0 0 chr4_random 290400 290452 -18561361 + (TG)n Simple_repeat Simple_repeat 2 53 0 1228 263 64 72 chr4_random 290934 291421 -18560392 + MLT1H LTR MaLR 67 549 0 291 289 110 66 chr4_random 291486 291759 -18560054 - MLT1L LTR MaLR -145 470 186 576 312 114 41 chr4_random 292074 292558 -18559255 - L2 LINE L2 -638 2676 2158 2216 118 0 0 chr4_random 292774 293079 -18558734 - AluSg SINE Alu -5 305 1 2734 164 21 41 chr4_random 293628 294208 -18557605 + L1MB3 LINE L1 5615 6182 -1 261 384 0 8 chr4_random 294525 294650 -18557163 + L2 LINE L2 3189 3312 -1 301 353 6 19 chr4_random 294876 295032 -18556781 + L3 LINE CR1 967 1120 -457 639 364 80 10 chr4_random 295550 295937 -18555876 + L3 LINE CR1 1016 1429 -148 219 383 66 16 chr4_random 296045 296228 -18555585 - MIR SINE MIR -67 195 4 25 0 0 0 chr4_random 296342 296367 -18555446 + AT_rich Low_complexity Low_complexity 1 25 0 339 25 0 0 chr4_random 296640 296680 -18555133 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 319 231 63 47 chr4_random 296692 296849 -18554964 - L1MC4 LINE L1 -1398 6597 6438 23 0 0 0 chr4_random 297049 297072 -18554741 + AT_rich Low_complexity Low_complexity 1 23 0 1979 123 3 0 chr4_random 297199 297505 -18554308 - AluSq SINE Alu 0 307 1 250 236 24 32 chr4_random 297824 297947 -18553866 + (TATATG)n Simple_repeat Simple_repeat 3 124 0 531 295 35 10 chr4_random 298279 298479 -18553334 - MER63A DNA MER1_type -3 207 3 400 349 88 87 chr4_random 299854 300517 -18551296 + L1MEd LINE L1 44 710 -5409 2299 102 3 6 chr4_random 300517 300830 -18550983 + AluSp SINE Alu 1 312 -1 400 349 88 87 chr4_random 300830 300902 -18550911 + L1MEd LINE L1 710 780 -5339 1085 318 59 36 chr4_random 300946 301696 -18550117 + L2 LINE L2 2531 3302 -11 251 297 78 15 chr4_random 301737 302006 -18549807 + L1M4 LINE L1 4332 4617 -1529 2180 217 30 16 chr4_random 302257 302755 -18549058 + MLT1D LTR MaLR 1 505 0 324 296 92 46 chr4_random 302822 303018 -18548795 + L1M4 LINE L1 5013 5217 -929 2287 115 27 21 chr4_random 303020 303393 -18548420 - THE1C LTR MaLR 0 375 1 558 254 156 77 chr4_random 303848 304367 -18547446 + MER34B LTR ERV1 1 560 -5 452 364 57 28 chr4_random 304677 305029 -18546784 - L1MEc LINE L1 -5963 433 72 22 0 0 0 chr4_random 305068 305090 -18546723 + AT_rich Low_complexity Low_complexity 1 22 0 268 250 25 25 chr4_random 306389 306469 -18545344 + MIR SINE MIR 63 142 -120 2077 138 3 0 chr4_random 307287 307599 -18544214 + AluSp SINE Alu 1 313 0 268 247 0 27 chr4_random 307678 307751 -18544062 + MSTD LTR MaLR 133 203 -193 313 333 31 0 chr4_random 307776 307905 -18543908 - L2 LINE L2 -1643 1671 1539 1057 240 111 27 chr4_random 308279 308766 -18543047 + L1M4 LINE L1 4726 5253 -893 300 211 0 0 chr4_random 308792 308863 -18542950 + (TATG)n Simple_repeat Simple_repeat 4 74 0 2442 109 17 6 chr4_random 310550 310908 -18540905 + THE1B LTR MaLR 1 362 -2 28 71 0 0 chr4_random 311288 311344 -18540469 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr4_random 311721 311745 -18540068 + AT_rich Low_complexity Low_complexity 1 24 0 1877 162 7 3 chr4_random 311936 312238 -18539575 + AluSx SINE Alu 1 303 -9 2179 140 82 31 chr4_random 312479 312892 -18538921 - Tigger2a DNA MER2_type 0 434 1 282 398 46 15 chr4_random 313264 313523 -18538290 + L3 LINE CR1 983 1249 -328 180 0 0 0 chr4_random 313691 313711 -18538102 + (TG)n Simple_repeat Simple_repeat 2 21 0 218 186 0 0 chr4_random 313821 313864 -18537949 + (CAT)n Simple_repeat Simple_repeat 3 45 0 25 51 0 0 chr4_random 315546 315585 -18536228 + AT_rich Low_complexity Low_complexity 1 39 0 268 385 53 18 chr4_random 315585 315811 -18536002 - MIR SINE MIR -1 261 28 207 0 0 0 chr4_random 317741 317764 -18534049 + (A)n Simple_repeat Simple_repeat 1 23 0 467 316 64 47 chr4_random 318338 318635 -18533178 + MLT1I LTR MaLR 106 407 -2 183 326 0 0 chr4_random 318830 318876 -18532937 - MIR SINE MIR -170 92 47 772 181 0 8 chr4_random 318949 319076 -18532737 - FLAM_C SINE Alu -17 126 1 339 326 11 38 chr4_random 320981 321165 -18530648 - MIR SINE MIR -36 226 48 284 149 0 0 chr4_random 321205 321252 -18530561 - U7 snRNA snRNA -11 52 6 242 321 38 9 chr4_random 322025 322131 -18529682 - L1ME LINE L1 -266 5855 5747 278 176 68 27 chr4_random 322658 322732 -18529081 - MADE1 DNA Mariner -3 77 1 22 56 0 0 chr4_random 322777 322813 -18529000 + AT_rich Low_complexity Low_complexity 1 36 0 229 172 17 17 chr4_random 323348 323406 -18528407 + (TA)n Simple_repeat Simple_repeat 1 58 0 42 48 0 0 chr4_random 323718 323781 -18528032 + AT_rich Low_complexity Low_complexity 1 63 0 211 203 54 81 chr4_random 323847 323921 -18527892 - MIR SINE MIR -142 120 49 1073 269 67 111 chr4_random 324062 324641 -18527172 + L2 LINE L2 2157 2710 -604 26 64 0 0 chr4_random 325389 325436 -18526377 + AT_rich Low_complexity Low_complexity 1 47 0 2340 164 5 5 chr4_random 325538 325935 -18525878 - MER31A LTR ERV1 -83 402 6 360 256 24 0 chr4_random 326089 326171 -18525642 - L2 LINE L2 -520 2794 2711 207 325 26 13 chr4_random 326227 326304 -18525509 - MIR SINE MIR -86 122 45 405 308 8 15 chr4_random 327486 327616 -18524197 + MIR SINE MIR 126 254 -8 222 37 0 0 chr4_random 327617 327644 -18524169 + (TAG)n Simple_repeat Simple_repeat 1 27 0 540 283 89 61 chr4_random 327844 328718 -18523095 - L1M4 LINE L1 -1430 4716 3818 247 308 69 26 chr4_random 328953 329194 -18522619 - L1M4 LINE L1 -2532 3614 3361 286 100 0 0 chr4_random 329248 329288 -18522525 - L1MA8 LINE L1 -212 6079 6040 333 263 120 15 chr4_random 329392 329525 -18522288 + MIR SINE MIR 110 256 -6 1466 194 35 46 chr4_random 330255 330622 -18521191 - MLT1A1 LTR MaLR -2 363 1 1867 152 27 10 chr4_random 331715 332012 -18519801 - AluSx SINE Alu -10 302 1 255 386 0 0 chr4_random 332080 332150 -18519663 + L2 LINE L2 3150 3219 -53 243 0 0 0 chr4_random 332735 332762 -18519051 + (CA)n Simple_repeat Simple_repeat 2 28 0 238 270 99 45 chr4_random 333879 333990 -18517823 + MIR SINE MIR 31 147 -115 25 0 0 0 chr4_random 334089 334114 -18517699 + AT_rich Low_complexity Low_complexity 1 25 0 1614 95 0 0 chr4_random 334345 334567 -18517246 + L1PA7 LINE L1 5925 6146 -8 1091 274 65 21 chr4_random 335455 335838 -18515975 - MER110 LTR ERV1 -31 460 61 1674 231 119 35 chr4_random 336107 336587 -18515226 + MLT2B1 LTR ERVL 1 520 0 969 225 47 55 chr4_random 336618 337022 -18514791 - MLT1A2 LTR MaLR -2 386 1 320 341 23 8 chr4_random 337681 337813 -18514000 - MIR3 SINE MIR -36 172 39 211 346 12 0 chr4_random 337874 337955 -18513858 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 22 35 0 0 chr4_random 338192 338221 -18513592 + AT_rich Low_complexity Low_complexity 1 29 0 258 267 73 30 chr4_random 338280 338419 -18513394 + L1P LINE L1 5285 5429 -725 2158 69 4 7 chr4_random 338427 338702 -18513111 - AluY SINE Alu -17 294 21 633 316 111 20 chr4_random 338872 339423 -18512390 - L1ME3A LINE L1 -273 5897 5297 278 197 0 0 chr4_random 339482 339548 -18512265 + (TA)n Simple_repeat Simple_repeat 2 67 0 227 183 0 42 chr4_random 339566 339637 -18512176 + T-rich Low_complexity Low_complexity 3 70 0 990 270 19 4 chr4_random 339706 339973 -18511840 - MER69 DNA AcHobo -2254 272 2 374 347 20 7 chr4_random 339985 340135 -18511678 + L2 LINE L2 3162 3313 0 1197 125 65 0 chr4_random 340329 340513 -18511300 - THE1C LTR MaLR 0 375 180 221 276 17 0 chr4_random 341891 341949 -18509864 - L2 LINE L2 0 3313 3255 2079 217 25 70 chr4_random 342242 342814 -18508999 - MLT2B3 LTR ERVL -8 546 1 234 0 0 0 chr4_random 342888 342914 -18508899 + (TG)n Simple_repeat Simple_repeat 2 27 0 5616 205 61 19 chr4_random 343510 344719 -18507094 - L1MC3 LINE L1 -2 7783 6513 2215 114 3 0 chr4_random 344719 345025 -18506788 - AluSp SINE Alu -4 309 3 5616 205 61 19 chr4_random 345025 345145 -18506668 - L1MC3 LINE L1 -1272 6513 6399 22 0 0 0 chr4_random 345153 345175 -18506638 + AT_rich Low_complexity Low_complexity 1 22 0 353 200 0 21 chr4_random 345647 345742 -18506071 + L1M4 LINE L1 2282 2374 -3772 322 175 103 19 chr4_random 345782 345886 -18505927 + FLAM_A SINE Alu 4 114 -19 1866 261 90 30 chr4_random 345892 346006 -18505807 + L1M4 LINE L1 2357 2463 -3683 973 24 16 0 chr4_random 346006 346130 -18505683 + (GAAA)n Simple_repeat Simple_repeat 3 128 0 1866 261 90 30 chr4_random 346130 346766 -18505047 + L1M4 LINE L1 2463 3060 -3086 436 193 0 0 chr4_random 346766 346849 -18504964 + L1PB4 LINE L1 6074 6156 0 1866 261 90 30 chr4_random 346849 346877 -18504936 + L1M4 LINE L1 3060 3085 -3061 2411 87 0 0 chr4_random 346877 347186 -18504627 + AluY SINE Alu 1 309 -2 1866 261 90 30 chr4_random 347186 347460 -18504353 + L1M4 LINE L1 3085 3474 -2672 559 244 118 79 chr4_random 347609 347949 -18503864 - L1ME2 LINE L1 -50 6114 5762 1622 187 30 41 chr4_random 347956 348229 -18503584 - MLT1A1 LTR MaLR 0 365 96 1404 215 96 11 chr4_random 348229 348592 -18503221 + MSTD LTR MaLR 1 394 -2 1622 187 30 41 chr4_random 348592 348687 -18503126 - MLT1A1 LTR MaLR -269 96 1 975 264 61 23 chr4_random 348721 349179 -18502634 - L1ME2 LINE L1 -471 5695 5210 578 239 38 68 chr4_random 349422 349715 -18502098 - L1ME2 LINE L1 -992 5154 4871 198 0 0 0 chr4_random 350711 350733 -18501080 + (A)n Simple_repeat Simple_repeat 1 22 0 540 318 46 5 chr4_random 351475 351670 -18500143 - MIR SINE MIR -4 258 56 2088 118 3 0 chr4_random 351793 352121 -18499692 - AluSq SINE Alu 0 329 1 270 385 65 10 chr4_random 353025 353225 -18498588 - MIR SINE MIR -6 256 46 1809 66 4 0 chr4_random 353589 353817 -18497996 + AluY SINE Alu 63 291 -20 21 0 0 0 chr4_random 354205 354226 -18497587 + AT_rich Low_complexity Low_complexity 1 21 0 328 307 50 10 chr4_random 354894 354995 -18496818 + L2 LINE L2 3195 3299 -14 1118 152 34 5 chr4_random 355574 355778 -18496035 + MER41B LTR ERV1 426 635 0 1213 240 163 3 chr4_random 355784 356147 -18495666 - Charlie1a DNA MER1_type -730 725 305 183 42 0 0 chr4_random 356156 356180 -18495633 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1093 103 6 0 chr4_random 356183 356339 -18495474 - AluY SINE Alu -32 279 123 794 265 12 74 chr4_random 356343 356667 -18495146 - Charlie1a DNA MER1_type -1151 304 1 21 57 0 0 chr4_random 357309 357344 -18494469 + AT_rich Low_complexity Low_complexity 1 35 0 309 357 30 8 chr4_random 357380 357615 -18494198 + L1ME LINE L1 5335 5574 -547 400 282 47 54 chr4_random 357872 358021 -18493792 - L2 LINE L2 -269 3044 2897 2387 126 58 23 chr4_random 358545 358980 -18492833 + LTR7 LTR ERV1 1 450 0 771 234 115 23 chr4_random 359203 359507 -18492306 + LTR16B LTR ERVL 120 451 -13 2906 108 2 0 chr4_random 360766 361194 -18490619 - L1PA7 LINE L1 -1040 5106 4678 6576 88 1 3 chr4_random 361195 362248 -18489565 + L1PA7 LINE L1 5101 6151 -3 26 0 0 0 chr4_random 362248 362274 -18489539 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4_random 362379 362404 -18489409 + AT_rich Low_complexity Low_complexity 1 25 0 454 237 15 69 chr4_random 362688 362819 -18488994 + MER70A LTR ERVL 12 135 -337 1211 239 13 0 chr4_random 362840 363079 -18488734 + MER70A LTR ERVL 101 342 -130 6033 76 1 14 chr4_random 363079 363869 -18487944 - LTR17 LTR ERV1 0 780 1 2334 65 3 0 chr4_random 363870 364160 -18487653 - HERV17 LTR ERV1 -1 8625 8335 283 77 0 0 chr4_random 364150 364189 -18487624 - HERV17 LTR ERV1 -1078 7548 7510 * 5799 52 8 0 chr4_random 364182 364892 -18486921 - HERV17 LTR ERV1 -2607 6019 5304 513 228 55 0 chr4_random 364924 365051 -18486762 + MER70A LTR ERVL 339 472 0 4904 75 46 3 chr4_random 365054 365746 -18486067 - LTR30 LTR ERV1 0 722 1 2815 85 3 0 chr4_random 365993 366369 -18485444 - MER51B LTR ERV1 0 377 1 29 47 0 0 chr4_random 367783 367826 -18483987 + AT_rich Low_complexity Low_complexity 1 43 0 619 213 46 14 chr4_random 367833 368117 -18483696 - L1MA4A LINE L1 -23 6280 5927 961 39 0 23 chr4_random 368117 368247 -18483566 + L1PA5 LINE L1 6028 6154 0 2906 146 66 18 chr4_random 368254 368831 -18482982 - LTR38B LTR ERV1 0 611 8 2977 141 2 52 chr4_random 368836 369389 -18482424 - L1MA4A LINE L1 -388 5915 5391 2860 105 13 3 chr4_random 369507 369896 -18481917 + MLT2A2 LTR ERVL 1 393 -60 933 145 101 0 chr4_random 369903 370062 -18481751 - AluSg SINE Alu -130 180 6 2335 71 0 0 chr4_random 370072 370389 -18481424 - AluY SINE Alu 0 317 1 40019 93 8 2 chr4_random 370394 375726 -18476087 + HERVL-A2 LTR ERVL 119 5482 -172 2266 141 29 16 chr4_random 375728 376098 -18475715 + MLT2A2 LTR ERVL 5 372 -81 360 116 87 14 chr4_random 376129 376198 -18475615 + MLT2A2 LTR ERVL 333 406 -47 220 68 23 23 chr4_random 376203 376247 -18475566 + (TA)n Simple_repeat Simple_repeat 2 45 0 392 148 58 0 chr4_random 376278 376536 -18475277 + (TA)n Simple_repeat Simple_repeat 1 273 0 364 348 51 0 chr4_random 376717 376855 -18474958 + MIR SINE MIR 46 190 -72 365 290 126 38 chr4_random 377074 377312 -18474501 + MIR SINE MIR 3 261 -1 653 187 0 50 chr4_random 377367 377506 -18474307 - FLAM_C SINE Alu -11 132 1 302 316 42 14 chr4_random 377918 378130 -18473683 - L1ME3A LINE L1 -300 5939 5722 700 244 24 28 chr4_random 378132 378345 -18473468 + MER20 DNA MER1_type 4 215 -4 345 273 141 25 chr4_random 378373 378941 -18472872 - L1ME3A LINE L1 -1410 4805 4172 367 329 81 39 chr4_random 379006 379365 -18472448 - L1ME3A LINE L1 -5213 1183 810 21 0 0 0 chr4_random 380483 380504 -18471309 + AT_rich Low_complexity Low_complexity 1 21 0 3842 129 51 2 chr4_random 380789 381394 -18470419 - MER41B LTR ERV1 0 635 1 249 33 0 0 chr4_random 382811 382841 -18468972 + (TTTTC)n Simple_repeat Simple_repeat 1 30 0 1270 214 37 41 chr4_random 384519 384813 -18467000 + AluJo SINE Alu 1 293 -19 3216 161 8 75 chr4_random 386030 386486 -18465327 - L1MA8 LINE L1 -22 6269 5877 2229 112 0 0 chr4_random 386486 386781 -18465032 - AluSx SINE Alu -17 295 1 3216 161 8 75 chr4_random 386781 387040 -18464773 - L1MA8 LINE L1 -414 5877 5602 1386 178 30 16 chr4_random 387052 387355 -18464458 - L1MA5 LINE L1 0 6300 5994 1952 154 3 3 chr4_random 387395 387870 -18463943 - AluSx SINE Alu 0 475 1 364 190 25 0 chr4_random 387872 387951 -18463862 - L1MA8 LINE L1 -712 5588 5508 * 4637 157 25 5 chr4_random 387947 388929 -18462884 + L1M2 LINE L1 4468 5463 -743 216 266 16 16 chr4_random 390415 390479 -18461334 - MIR3 SINE MIR -7 201 138 1949 142 3 22 chr4_random 390646 390962 -18460851 + AluSx SINE Alu 3 312 0 202 211 123 0 chr4_random 391120 391177 -18460636 - L2 LINE L2 -2 3311 3248 194 355 136 26 chr4_random 391390 391545 -18460268 + MIR3 SINE MIR 34 205 -3 1857 165 10 0 chr4_random 391671 392015 -18459798 - AluSx SINE Alu 0 347 1 13380 169 24 3 chr4_random 392016 394378 -18457435 + Tigger1 DNA MER2_type 8 2418 0 2005 152 11 37 chr4_random 394777 395151 -18456662 + THE1B LTR MaLR 1 364 0 9872 130 49 0 chr4_random 395151 396651 -18455162 + THE1B-int LTR MaLR 1 1574 -6 2001 138 41 39 chr4_random 396656 397019 -18454794 + THE1B LTR MaLR 1 364 0 263 260 52 0 chr4_random 397053 397130 -18454683 - MIR SINE MIR -19 243 163 28 29 0 0 chr4_random 397372 397407 -18454406 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr4_random 397969 397990 -18453823 + AT_rich Low_complexity Low_complexity 1 21 0 454 385 29 19 chr4_random 398160 398578 -18453235 + L1M3c LINE L1 173 594 -5719 1947 256 80 48 chr4_random 398791 398890 -18452923 + L1M3c LINE L1 796 890 -5492 1945 133 19 13 chr4_random 398890 399198 -18452615 - AluSg SINE Alu 0 310 1 1947 256 80 48 chr4_random 399198 401145 -18450668 + L1M3c LINE L1 890 2830 -3552 1634 128 0 12 chr4_random 401155 401405 -18450408 - THE1C LTR MaLR 0 375 129 5656 236 111 19 chr4_random 401409 401710 -18450103 + L1ME1 LINE L1 3471 3743 -2423 1326 181 96 34 chr4_random 401710 402063 -18449750 + THE1C LTR MaLR 1 375 0 5656 236 111 19 chr4_random 402063 402567 -18449246 + L1ME1 LINE L1 3743 4199 -1967 1653 183 15 51 chr4_random 402567 402756 -18449057 - THE1C LTR MaLR 0 375 206 228 35 0 0 chr4_random 402756 402785 -18449028 + (GA)n Simple_repeat Simple_repeat 1 29 0 1653 183 15 51 chr4_random 402785 402984 -18448829 - THE1C LTR MaLR -169 206 1 5656 236 111 19 chr4_random 402984 404478 -18447335 + L1ME1 LINE L1 4199 5992 -174 3100 178 22 7 chr4_random 404069 404653 -18447160 + L1MB1 LINE L1 5576 6168 0 * 542 354 41 73 chr4_random 405509 405897 -18445916 + L2 LINE L2 2577 2976 -337 2778 29 0 0 chr4_random 405897 406211 -18445602 - AluYb8 SINE Alu -4 314 1 542 354 41 73 chr4_random 406211 406297 -18445516 + L2 LINE L2 2976 3039 -274 3142 118 14 27 chr4_random 406297 406815 -18444998 - MER9 LTR ERVK 0 511 1 542 354 41 73 chr4_random 406815 406845 -18444968 + L2 LINE L2 3039 3068 -245 270 231 112 33 chr4_random 406931 407021 -18444792 - MLT1I LTR MaLR 0 450 308 289 362 26 0 chr4_random 407464 407580 -18444233 + L2 LINE L2 3177 3295 -18 268 337 121 25 chr4_random 407889 408088 -18443725 - MIR SINE MIR 0 262 45 22 0 0 0 chr4_random 408126 408148 -18443665 + AT_rich Low_complexity Low_complexity 1 22 0 261 299 117 15 chr4_random 409276 409413 -18442400 - MIR SINE MIR -10 252 102 5038 96 16 9 chr4_random 411154 412320 -18439493 - L1P3 LINE L1 -413 5741 4572 238 308 19 0 chr4_random 413204 413311 -18438502 + (TATG)n Simple_repeat Simple_repeat 4 112 0 201 176 0 44 chr4_random 413604 413672 -18438141 + CT-rich Low_complexity Low_complexity 4 68 0 1980 143 45 34 chr4_random 413845 414203 -18437610 + THE1B LTR MaLR 1 362 -2 277 118 0 20 chr4_random 414446 414497 -18437316 - MLT2A2 LTR ERVL 0 444 395 238 105 18 18 chr4_random 414500 414557 -18437256 + (TA)n Simple_repeat Simple_repeat 1 57 0 303 191 0 0 chr4_random 414592 414655 -18437158 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 2927 108 12 0 chr4_random 414658 415066 -18436747 - MLT2A2 LTR ERVL -40 413 1 613 93 0 0 chr4_random 415142 415228 -18436585 - MLT2A2 LTR ERVL -367 86 1 382 363 126 0 chr4_random 415795 416018 -18435795 + MIR SINE MIR 3 253 -9 881 243 71 30 chr4_random 416218 416485 -18435328 + MER93a LTR ERV1 121 398 -4 24 32 0 0 chr4_random 416825 416856 -18434957 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr4_random 417354 417385 -18434428 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr4_random 417719 417741 -18434072 + AT_rich Low_complexity Low_complexity 1 22 0 234 241 0 0 chr4_random 418044 418098 -18433715 + MIR SINE MIR 103 156 -106 274 189 0 0 chr4_random 418131 418184 -18433629 - LTR40a LTR ERVL -19 500 448 1626 199 38 80 chr4_random 418192 418619 -18433194 - MSTB LTR MaLR 0 426 18 1068 309 36 20 chr4_random 418614 419006 -18432807 - LTR40a LTR ERVL -86 433 36 * 190 376 82 24 chr4_random 419314 419484 -18432329 - L2 LINE L2 -223 3049 2870 1286 276 46 78 chr4_random 421490 422121 -18429692 + MLT1E3 LTR MaLR 1 611 -13 3356 166 64 19 chr4_random 422389 422729 -18429084 + L1PB3 LINE L1 5443 5766 -388 288 0 0 0 chr4_random 422729 422761 -18429052 + (CA)n Simple_repeat Simple_repeat 2 33 0 3356 166 64 19 chr4_random 422761 423095 -18428718 + L1PB3 LINE L1 5766 6147 -7 225 0 0 0 chr4_random 423150 423175 -18428638 + (TG)n Simple_repeat Simple_repeat 2 26 0 185 62 0 31 chr4_random 424426 424458 -18427355 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 2220 202 50 89 chr4_random 424551 425273 -18426540 + LTR8A LTR ERV1 34 727 0 2471 205 117 9 chr4_random 425454 426025 -18425788 - MER4D LTR ERV1 0 903 271 501 181 64 0 chr4_random 426013 426107 -18425706 - MER4D LTR ERV1 -803 100 1 * 198 220 22 22 chr4_random 426122 426213 -18425600 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 234 0 0 0 chr4_random 427156 427182 -18424631 + (TC)n Simple_repeat Simple_repeat 2 27 0 536 205 9 25 chr4_random 427206 427340 -18424473 + LTR40b LTR ERVL 323 463 -2 30 59 0 0 chr4_random 427420 427471 -18424342 + AT_rich Low_complexity Low_complexity 1 51 0 279 0 0 0 chr4_random 427484 427515 -18424298 + (CA)n Simple_repeat Simple_repeat 1 31 0 190 308 13 13 chr4_random 427705 427783 -18424030 + MIR SINE MIR 87 164 -98 26 0 0 0 chr4_random 427788 427814 -18423999 + AT_rich Low_complexity Low_complexity 1 26 0 1293 310 24 15 chr4_random 427936 428401 -18423412 + LTR40a LTR ERVL 29 497 -22 23 33 0 0 chr4_random 428703 428733 -18423080 + AT_rich Low_complexity Low_complexity 1 30 0 848 298 61 52 chr4_random 429028 429779 -18422034 + L1ME1 LINE L1 2156 2871 -3344 2162 265 46 51 chr4_random 429779 431251 -18420562 + L1ME1 LINE L1 4621 6069 -166 228 259 0 0 chr4_random 431340 431398 -18420415 + L1MA9 LINE L1 6251 6308 -4 464 240 110 13 chr4_random 432182 432336 -18419477 + MER5B DNA MER1_type 1 169 -9 2404 52 0 0 chr4_random 432377 432668 -18419145 + AluY SINE Alu 3 293 -18 2016 183 3 6 chr4_random 433095 433461 -18418352 + MLT1A1 LTR MaLR 1 365 0 1599 206 0 3 chr4_random 433625 433921 -18417892 + AluJb SINE Alu 1 295 -17 210 136 0 0 chr4_random 433984 434028 -18417785 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr4_random 434227 434249 -18417564 + AT_rich Low_complexity Low_complexity 1 22 0 468 283 61 35 chr4_random 434550 434748 -18417065 - MLT1H LTR MaLR 0 549 347 272 237 0 0 chr4_random 434922 434981 -18416832 - MLT1H LTR MaLR -411 138 80 203 156 0 0 chr4_random 435375 435407 -18416406 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 4731 179 17 4 chr4_random 435965 436810 -18415003 + Tigger2 DNA MER2_type 1 856 -1862 855 222 0 18 chr4_random 436800 436971 -18414842 + Tigger2 DNA MER2_type 2550 2717 -1 * 21 36 0 0 chr4_random 437366 437394 -18414419 + AT_rich Low_complexity Low_complexity 1 28 0 2125 169 7 7 chr4_random 437655 438058 -18413755 - MER57A LTR ERV1 0 403 1 3401 74 7 0 chr4_random 438680 439138 -18412675 - L1PA7 LINE L1 -1 6153 5693 1518 63 5 0 chr4_random 439141 439347 -18412466 + L1P LINE L1 5023 5229 -917 23633 116 6 3 chr4_random 439691 444126 -18407687 + L1PA8 LINE L1 1728 6169 0 484 167 0 0 chr4_random 444145 444223 -18407590 + Tigger1 DNA MER2_type 1720 1797 -621 29 78 0 0 chr4_random 444819 444883 -18406930 + AT_rich Low_complexity Low_complexity 1 64 0 1445 241 94 54 chr4_random 445350 445709 -18406104 + MLT1E2 LTR MaLR 111 435 -132 2191 72 0 0 chr4_random 445709 446029 -18405784 + AluY SINE Alu 6 325 0 1445 241 94 54 chr4_random 446029 446150 -18405663 + MLT1E2 LTR MaLR 435 550 -17 1025 162 0 0 chr4_random 446405 446572 -18405241 - AluSq SINE Alu -10 303 137 197 300 29 0 chr4_random 446720 446790 -18405023 + MIR3 SINE MIR 87 158 -50 275 250 167 0 chr4_random 447133 447217 -18404596 - MIR SINE MIR -8 254 157 2123 76 7 7 chr4_random 447241 447518 -18404295 - AluY SINE Alu -33 278 2 22 0 0 0 chr4_random 448064 448086 -18403727 + AT_rich Low_complexity Low_complexity 1 22 0 880 132 8 0 chr4_random 448086 448215 -18403598 - AluSq SINE Alu -180 133 4 987 195 39 78 chr4_random 449275 449582 -18402231 + LTR37A LTR ERV1 46 340 -86 672 247 101 46 chr4_random 449585 449804 -18402009 - MLT1E1 LTR MaLR 0 654 424 668 325 50 9 chr4_random 450284 450703 -18401110 + L1M4 LINE L1 2339 2774 -3372 26 74 0 0 chr4_random 451098 451152 -18400661 + AT_rich Low_complexity Low_complexity 1 54 0 201 232 0 71 chr4_random 451507 451563 -18400250 + L2 LINE L2 3262 3313 0 217 234 234 13 chr4_random 451826 451903 -18399910 + MIR SINE MIR 27 120 -142 201 311 0 11 chr4_random 451937 452027 -18399786 + (TA)n Simple_repeat Simple_repeat 2 90 0 180 111 0 0 chr4_random 453123 453150 -18398663 + (CA)n Simple_repeat Simple_repeat 2 28 0 271 331 74 16 chr4_random 454075 454196 -18397617 + L3b LINE CR1 1436 1563 -20 1986 127 0 0 chr4_random 454612 454909 -18396904 - AluSg SINE Alu 0 301 5 934 324 133 24 chr4_random 454964 455734 -18396079 + L2 LINE L2 2449 3313 0 1436 207 54 76 chr4_random 455783 456299 -18395514 - MLT1D LTR MaLR 0 505 1 193 380 88 6 chr4_random 456299 456470 -18395343 + L2 LINE L2 1788 1972 -1342 2052 168 71 30 chr4_random 457127 457561 -18394252 - LTR47A LTR ERVL 0 452 1 186 429 75 33 chr4_random 457821 458061 -18393752 + L2 LINE L2 3015 3264 -8 1053 209 29 0 chr4_random 458307 458513 -18393300 + MER20 DNA MER1_type 4 215 -4 1099 283 46 28 chr4_random 459494 459954 -18391859 + MLT1L LTR MaLR 1 468 -147 24 0 0 0 chr4_random 461125 461149 -18390664 + AT_rich Low_complexity Low_complexity 1 24 0 22 88 0 0 chr4_random 462952 463009 -18388804 + AT_rich Low_complexity Low_complexity 1 57 0 28 0 0 0 chr4_random 464154 464182 -18387631 + AT_rich Low_complexity Low_complexity 1 28 0 260 325 26 0 chr4_random 465162 465276 -18386537 + LTR33 LTR ERVL 367 483 -38 694 247 11 45 chr4_random 465475 465653 -18386160 - MER45A DNA AcHobo -4 174 3 561 363 98 18 chr4_random 467359 467704 -18384109 + HERVL LTR ERVL 2894 3210 -2444 210 37 0 0 chr4_random 467704 467731 -18384082 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 561 363 98 18 chr4_random 467731 467985 -18383828 + HERVL LTR ERVL 3210 3541 -2113 1166 350 31 28 chr4_random 468347 468590 -18383223 + HERVL LTR ERVL 4065 4306 -1458 1661 193 58 25 chr4_random 468590 468953 -18382860 - THE1C LTR MaLR 0 375 1 1166 350 31 28 chr4_random 468953 469418 -18382395 + HERVL LTR ERVL 4306 4775 -989 369 0 0 0 chr4_random 469480 469521 -18382292 + (TTA)n Simple_repeat Simple_repeat 2 42 0 836 238 84 0 chr4_random 469928 470248 -18381565 + Charlie1 DNA MER1_type 2374 2720 -41 40 59 0 0 chr4_random 470396 470464 -18381349 + AT_rich Low_complexity Low_complexity 1 68 0 21 0 0 0 chr4_random 470803 470824 -18380989 + AT_rich Low_complexity Low_complexity 1 21 0 1533 140 89 78 chr4_random 471123 471195 -18380618 - THE1C LTR MaLR 0 375 305 2293 115 0 3 chr4_random 471195 471509 -18380304 + AluSq SINE Alu 1 313 0 1533 140 89 78 chr4_random 471509 471807 -18380006 - THE1C LTR MaLR -70 305 1 9119 153 6 46 chr4_random 471807 473450 -18378363 - THE1C-int LTR MaLR 0 1580 4 1605 179 62 22 chr4_random 473457 473814 -18377999 - THE1C LTR MaLR -4 371 1 637 233 8 0 chr4_random 473830 473950 -18377863 + MER44D DNA MER2_type 1 121 -584 * 1412 235 7 0 chr4_random 473946 474223 -18377590 + MER44D DNA MER2_type 452 602 -3 2233 100 33 0 chr4_random 474369 474669 -18377144 + AluY SINE Alu 2 311 0 334 361 13 13 chr4_random 474900 475058 -18376755 + MIR SINE MIR 12 169 -93 939 272 103 12 chr4_random 475661 476087 -18375726 + MLT1C LTR MaLR 1 465 -2 1809 251 77 20 chr4_random 476398 476891 -18374922 + MLT1E LTR MaLR 5 525 -68 6613 77 5 0 chr4_random 476946 477826 -18373987 - L1PA7 LINE L1 0 6154 5271 1244 84 6 0 chr4_random 477829 478008 -18373805 + L1PA7 LINE L1 5098 5277 -869 354 341 116 31 chr4_random 478287 478545 -18373268 + L3 LINE CR1 1204 1483 -94 302 182 15 0 chr4_random 478602 478668 -18373145 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 187 149 21 21 chr4_random 478755 478802 -18373011 + (TAGA)n Simple_repeat Simple_repeat 3 49 0 210 143 0 0 chr4_random 479436 479471 -18372342 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr4_random 479599 479628 -18372185 + AT_rich Low_complexity Low_complexity 1 29 0 197 184 82 20 chr4_random 479717 479766 -18372047 - L2 LINE L2 -1 3312 3261 1597 234 91 47 chr4_random 483443 483620 -18368193 + MER92B LTR ERV1 1 169 -467 408 40 0 0 chr4_random 483620 483670 -18368143 + (CA)n Simple_repeat Simple_repeat 2 51 0 1597 234 91 47 chr4_random 483670 484051 -18367762 + MER92B LTR ERV1 169 584 -52 1643 244 45 33 chr4_random 484622 485423 -18366390 + MER31-int LTR ERV1 427 1286 -3650 1525 176 103 123 chr4_random 485483 486086 -18365727 + LTR38B LTR ERV1 2 592 -18 1658 258 64 85 chr4_random 486404 488135 -18363678 + MER31-int LTR ERV1 2477 4257 -679 359 208 92 42 chr4_random 488136 488256 -18363557 + LTR37A LTR ERV1 4 129 -297 308 273 70 0 chr4_random 488351 488479 -18363334 + MER31-int LTR ERV1 4366 4502 -434 7633 23 7 0 chr4_random 488526 489584 -18362229 - L1PA3 LINE L1 0 6155 5100 1443 271 40 36 chr4_random 489717 490322 -18361491 + MER92B LTR ERV1 30 636 0 21 82 0 0 chr4_random 492580 492629 -18359184 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr4_random 493068 493092 -18358721 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4_random 493361 493385 -18358428 + AT_rich Low_complexity Low_complexity 1 24 0 1606 134 9 0 chr4_random 493566 493798 -18358015 - AluSx SINE Alu -16 296 63 2230 112 0 0 chr4_random 494326 494629 -18357184 + AluY SINE Alu 1 303 -8 4400 168 36 5 chr4_random 495028 495896 -18355917 + MER4D LTR ERV1 1 660 -4 21 0 0 0 chr4_random 495939 495960 -18355853 + AT_rich Low_complexity Low_complexity 1 21 0 4707 120 29 17 chr4_random 496409 497469 -18354344 - L1PA13 LINE L1 -186 7415 6352 363 182 0 0 chr4_random 497481 497547 -18354266 - L1PA13 LINE L1 -2569 5015 4950 6206 223 42 77 chr4_random 497547 501704 -18350109 - L1PA13 LINE L1 -3143 4441 471 1896 166 91 13 chr4_random 501705 502102 -18349711 + MSTA LTR MaLR 1 428 0 8359 196 32 7 chr4_random 502106 503704 -18348109 + MSTA-int LTR MaLR 5 1643 -8 1320 184 95 48 chr4_random 503711 504069 -18347744 + THE1C LTR MaLR 1 375 0 2374 208 38 2 chr4_random 504069 504520 -18347293 - L1PA13 LINE L1 -7109 472 6 26 30 0 0 chr4_random 504605 504638 -18347175 + AT_rich Low_complexity Low_complexity 1 33 0 188 343 202 0 chr4_random 504760 504859 -18346954 + L2 LINE L2 3195 3313 0 1948 210 141 24 chr4_random 505706 505978 -18345835 - MER101B LTR ERV1 0 570 331 2312 142 6 0 chr4_random 505978 506331 -18345482 - THE1A LTR MaLR 0 355 1 1948 210 141 24 chr4_random 506331 506353 -18345460 - MER101B LTR ERV1 -239 331 313 1980 188 22 3 chr4_random 506353 506710 -18345103 - THE1B LTR MaLR 0 364 1 1948 210 141 24 chr4_random 506710 506924 -18344889 - MER101B LTR ERV1 -257 313 1 545 281 6 25 chr4_random 507126 507263 -18344550 - MLT1E2 LTR MaLR 0 505 372 2409 199 32 63 chr4_random 507263 507895 -18343918 - LTR9 LTR ERV1 0 612 1 940 124 4 182 chr4_random 507895 508137 -18343676 - HUERS-P3 LTR ERV1 -1 8918 8720 876 159 18 6 chr4_random 508294 508464 -18343349 - LTR9-int LTR ERV1 -2456 2559 2388 20726 145 48 33 chr4_random 508478 511963 -18339850 - LTR9-int LTR ERV1 -479 6939 3391 1809 164 3 7 chr4_random 511963 512256 -18339557 + AluSx SINE Alu 4 295 -17 20726 145 48 33 chr4_random 512256 512580 -18339233 - LTR9-int LTR ERV1 -4027 3391 3073 2304 180 27 23 chr4_random 512580 513019 -18338794 + LTR8 LTR ERV1 1 441 -250 3661 100 5 51 chr4_random 513019 513590 -18338223 - LTR9-int LTR ERV1 -4776 2642 2098 9775 176 23 13 chr4_random 513667 515334 -18336479 - LTR9-int LTR ERV1 -6518 2401 619 189 0 0 0 chr4_random 515334 515355 -18336458 + (GA)n Simple_repeat Simple_repeat 2 22 0 9775 176 23 13 chr4_random 515355 515981 -18335832 - LTR9-int LTR ERV1 -8300 619 1 2711 195 12 56 chr4_random 515981 516621 -18335192 - LTR9 LTR ERV1 0 612 1 700 252 34 74 chr4_random 516621 516895 -18334918 - MLT1E2 LTR MaLR -134 371 107 241 178 0 151 chr4_random 516895 516968 -18334845 - MER2 DNA MER2_type 0 345 284 336 260 0 0 chr4_random 516997 517074 -18334739 - MER2 DNA MER2_type -247 98 22 290 234 31 0 chr4_random 517087 517151 -18334662 - MLT1E2 LTR MaLR -439 66 1 237 108 0 0 chr4_random 517743 517780 -18334033 + (TTTC)n Simple_repeat Simple_repeat 4 40 0 206 211 0 35 chr4_random 518072 518129 -18333684 + (TTAA)n Simple_repeat Simple_repeat 2 56 0 190 324 0 29 chr4_random 519040 519108 -18332705 + MIR3 SINE MIR 136 201 -7 215 267 13 0 chr4_random 519224 519299 -18332514 + CT-rich Low_complexity Low_complexity 2 77 0 30 59 0 0 chr4_random 520016 520067 -18331746 + AT_rich Low_complexity Low_complexity 1 51 0 2231 62 16 20 chr4_random 520452 520758 -18331055 + AluY SINE Alu 1 305 -6 1120 275 91 14 chr4_random 521556 521974 -18329839 + LTR16A LTR ERVL 1 450 0 41 21 0 0 chr4_random 521994 522042 -18329771 + AT_rich Low_complexity Low_complexity 1 48 0 25 0 0 0 chr4_random 522284 522309 -18329504 + AT_rich Low_complexity Low_complexity 1 25 0 324 154 15 0 chr4_random 522378 522443 -18329370 + L1MA3 LINE L1 6240 6305 0 23 0 0 0 chr4_random 522510 522533 -18329280 + AT_rich Low_complexity Low_complexity 1 23 0 619 249 22 131 chr4_random 523127 523533 -18328280 - MER57A LTR ERV1 0 403 42 22 35 0 0 chr4_random 523533 523562 -18328251 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4_random 523651 523672 -18328141 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4_random 524341 524363 -18327450 + AT_rich Low_complexity Low_complexity 1 22 0 259 298 73 43 chr4_random 524446 524748 -18327065 + L1MEd LINE L1 940 1250 -4869 21 36 0 0 chr4_random 525087 525115 -18326698 + AT_rich Low_complexity Low_complexity 1 28 0 772 218 32 102 chr4_random 525201 525756 -18326057 - L1ME LINE L1 -569 5666 5149 1828 292 31 43 chr4_random 525781 526737 -18325076 - L1ME LINE L1 -5242 1154 210 1666 169 20 123 chr4_random 576757 577390 -18274423 - LOR1-int LTR ERV1 -3384 4736 4169 2421 123 19 6 chr4_random 577462 577828 -18273985 - THE1C LTR MaLR 0 375 5 5426 152 38 7 chr4_random 577831 578743 -18273070 - THE1C-int LTR MaLR 0 1580 640 1540 181 33 16 chr4_random 578844 579148 -18272665 - MER2 DNA MER2_type -36 309 1 230 218 0 0 chr4_random 580377 580432 -18271381 - LTR66 LTR ERVL -162 448 394 23 54 0 0 chr4_random 580526 580563 -18271250 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr4_random 581093 581130 -18270683 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr4_random 581656 581679 -18270134 + (A)n Simple_repeat Simple_repeat 1 23 0 9945 187 30 29 chr4_random 581680 581934 -18269879 - L1PA15-16 LINE L1 -4173 2676 2424 1722 146 13 39 chr4_random 581934 582242 -18269571 - AluSg SINE Alu -10 300 1 9945 187 30 29 chr4_random 582242 584118 -18267695 - L1PA15-16 LINE L1 -4425 2424 709 2819 258 30 8 chr4_random 584116 584980 -18266833 - L1M4 LINE L1 -929 5217 4335 * 2565 96 3 6 chr4_random 585052 585408 -18266405 - THE1A LTR MaLR 0 355 1 620 290 52 58 chr4_random 585583 586186 -18265627 - L1MCa LINE L1 -4580 2027 1246 7012 159 65 2 chr4_random 586186 587408 -18264405 - HSMAR2 DNA Mariner -2 1300 3 475 308 70 9 chr4_random 587411 587625 -18264188 - L1MCa LINE L1 -5179 1247 1021 208 222 0 0 chr4_random 588270 588315 -18263498 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr4_random 589484 589509 -18262304 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr4_random 591575 591618 -18260195 + AT_rich Low_complexity Low_complexity 1 43 0 180 0 0 0 chr4_random 591638 591658 -18260155 + (TA)n Simple_repeat Simple_repeat 1 20 0 2195 109 0 13 chr4_random 591732 592034 -18259779 - AluSx SINE Alu -12 300 3 322 185 215 0 chr4_random 592389 592454 -18259359 - ERVL LTR ERVL -3358 2406 2328 621 225 6 71 chr4_random 593272 593454 -18258359 - MER58B DNA MER1_type 0 341 172 297 281 9 26 chr4_random 594004 594118 -18257695 - LTR33 LTR ERVL 0 521 410 1132 165 106 145 chr4_random 594323 594710 -18257103 + MER57A LTR ERV1 1 372 -31 1588 175 7 21 chr4_random 594712 595003 -18256810 - AluJo SINE Alu -13 299 13 24 32 0 0 chr4_random 596105 596136 -18255677 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr4_random 597798 597826 -18253987 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 64 chr4_random 599057 599104 -18252709 + AT_rich Low_complexity Low_complexity 1 44 0 1193 100 58 5 chr4_random 599346 599531 -18252282 + L1PA7 LINE L1 4059 4254 -1888 2237 81 0 0 chr4_random 599531 599807 -18252006 + L1PA7 LINE L1 5858 6153 -1 903 263 63 76 chr4_random 600308 600832 -18250981 - MLT1F LTR MaLR 0 542 26 181 330 147 9 chr4_random 601837 601946 -18249867 - MIR3 SINE MIR -73 135 12 230 350 0 22 chr4_random 602227 602364 -18249449 + (CATATA)n Simple_repeat Simple_repeat 5 138 0 2385 78 0 0 chr4_random 602463 602769 -18249044 - AluY SINE Alu -4 307 2 212 329 31 50 chr4_random 603043 603204 -18248609 - L2 LINE L2 -457 2857 2700 23 54 0 0 chr4_random 603211 603248 -18248565 + AT_rich Low_complexity Low_complexity 1 37 0 537 250 27 124 chr4_random 603260 603632 -18248181 - L2 LINE L2 -575 2739 2404 315 373 45 10 chr4_random 604008 604209 -18247604 + MIR SINE MIR 45 252 -10 267 310 139 23 chr4_random 604878 605007 -18246806 - MIR SINE MIR -70 192 49 202 113 19 19 chr4_random 606755 606808 -18245005 + T-rich Low_complexity Low_complexity 3 55 0 1412 273 56 73 chr4_random 607109 607698 -18244115 + MER45C DNA AcHobo 30 608 -345 1184 126 11 0 chr4_random 608270 608445 -18243368 + AluSg/x SINE Alu 136 312 0 184 377 52 0 chr4_random 609243 609320 -18242493 - MIR SINE MIR -122 140 60 333 289 0 39 chr4_random 610925 611029 -18240784 + MIR SINE MIR 54 153 -55 1278 209 15 11 chr4_random 612440 612713 -18239100 + AluJb SINE Alu 32 305 -7 230 275 43 0 chr4_random 612781 612850 -18238963 + MLT1K LTR MaLR 505 576 -12 2099 112 11 0 chr4_random 613165 613450 -18238363 + AluSg SINE Alu 1 288 -22 1762 59 0 13 chr4_random 615003 615240 -18236573 + L1PA5 LINE L1 5920 6153 -1 25 0 0 0 chr4_random 615734 615759 -18236054 + AT_rich Low_complexity Low_complexity 1 25 0 430 309 148 9 chr4_random 615984 616201 -18235612 - MIR SINE MIR -6 256 10 873 278 60 22 chr4_random 616472 616839 -18234974 - L2 LINE L2 0 3313 2933 597 76 0 0 chr4_random 616855 616934 -18234879 + MADE1 DNA Mariner 1 79 -1 270 216 214 27 chr4_random 617131 617243 -18234570 + MIR SINE MIR 59 192 -16 307 171 171 13 chr4_random 619314 619390 -18232423 - MIR SINE MIR -173 89 2 22 0 0 0 chr4_random 619506 619528 -18232285 + AT_rich Low_complexity Low_complexity 1 22 0 182 333 0 0 chr4_random 619934 619988 -18231825 - L2 LINE L2 0 3272 3219 1489 202 41 3 chr4_random 621141 621433 -18230380 - AluJo SINE Alu -9 303 1 21 57 0 0 chr4_random 621514 621549 -18230264 + AT_rich Low_complexity Low_complexity 1 35 0 308 263 0 13 chr4_random 622143 622219 -18229594 - MER5C DNA MER1_type -248 76 2 230 298 21 89 chr4_random 623088 623279 -18228534 + L2 LINE L2 3136 3313 0 201 171 0 0 chr4_random 623727 623762 -18228051 + (TA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr4_random 624683 624706 -18227107 + AT_rich Low_complexity Low_complexity 1 23 0 2141 120 0 3 chr4_random 625177 625478 -18226335 - AluSq SINE Alu -13 300 1 199 328 57 52 chr4_random 625816 626008 -18225805 - L3 LINE CR1 -351 1226 1034 1255 193 34 121 chr4_random 626183 626691 -18225122 + MER31B LTR ERV1 1 659 -2 528 243 13 105 chr4_random 627246 627485 -18224328 + L2 LINE L2 3097 3313 0 820 232 100 25 chr4_random 627555 627917 -18223896 - LTR29 LTR ERV1 -2 609 236 1953 138 21 86 chr4_random 628017 628437 -18223376 - L1MA7 LINE L1 -194 6097 5705 25 0 0 0 chr4_random 629084 629109 -18222704 + AT_rich Low_complexity Low_complexity 1 25 0 1004 275 61 50 chr4_random 629209 629749 -18222064 - MLT1E1 LTR MaLR -119 474 2 365 311 68 31 chr4_random 629766 630148 -18221665 - L1MEc LINE L1 -5453 943 548 747 176 14 14 chr4_random 630213 630355 -18221458 + MLT1A1 LTR MaLR 1 142 -223 32 0 0 0 chr4_random 630781 630813 -18221000 + AT_rich Low_complexity Low_complexity 1 32 0 523 271 67 61 chr4_random 630930 631392 -18220421 + L1ME3A LINE L1 4541 5005 -1141 255 222 30 50 chr4_random 631434 631533 -18220280 + L1ME3A LINE L1 5177 5273 -873 1010 269 77 76 chr4_random 631714 632347 -18219466 + L1ME3A LINE L1 5465 6098 -72 2272 173 82 46 chr4_random 632353 632643 -18219170 - L1MA6 LINE L1 0 6300 6022 3457 146 0 6 chr4_random 632643 633172 -18218641 + MER1A DNA MER1_type 1 526 -1 2272 173 82 46 chr4_random 633172 633420 -18218393 - L1MA6 LINE L1 -278 6022 5743 228 67 0 0 chr4_random 633437 633467 -18218346 + (TA)n Simple_repeat Simple_repeat 1 30 0 5090 174 22 24 chr4_random 633500 634536 -18217277 + L1 LINE L1 3317 4350 -1796 40 49 0 0 chr4_random 634576 634637 -18217176 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr4_random 637270 637293 -18214520 + AT_rich Low_complexity Low_complexity 1 23 0 1946 147 0 0 chr4_random 637818 638103 -18213710 - AluSx SINE Alu -27 285 1 1401 213 3 11 chr4_random 638243 638529 -18213284 + AluJo SINE Alu 3 286 -26 344 305 227 39 chr4_random 638904 639265 -18212548 + MLT1A1 LTR MaLR 121 549 0 222 37 0 0 chr4_random 640216 640243 -18211570 + (TG)n Simple_repeat Simple_repeat 1 27 0 334 333 103 0 chr4_random 640613 640730 -18211083 + MIR3 SINE MIR 41 169 -39 586 315 48 23 chr4_random 640830 641066 -18210747 + MIR SINE MIR 2 241 -21 245 368 53 8 chr4_random 641362 641495 -18210318 + L2 LINE L2 2370 2508 -806 21 0 0 0 chr4_random 641644 641665 -18210148 + AT_rich Low_complexity Low_complexity 1 21 0 300 313 41 27 chr4_random 641706 641853 -18209960 - MLT1K LTR MaLR -111 477 329 359 333 34 0 chr4_random 642343 642460 -18209353 - L2 LINE L2 -6 3307 3187 1713 151 37 0 chr4_random 642621 642803 -18209010 - AluSx SINE Alu 0 313 115 278 0 54 0 chr4_random 642803 642840 -18208973 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1713 151 37 0 chr4_random 642840 642958 -18208855 - AluSx SINE Alu -198 115 3 268 277 8 42 chr4_random 643218 643337 -18208476 - MLT1K LTR MaLR -388 161 47 1359 235 39 28 chr4_random 645573 645759 -18206054 + MLT1B LTR MaLR 27 220 -170 388 156 0 13 chr4_random 645759 645836 -18205977 + MADE1 DNA Mariner 5 80 0 1359 235 39 28 chr4_random 645836 646007 -18205806 + MLT1B LTR MaLR 220 388 -2 234 342 38 13 chr4_random 646022 646172 -18205641 - MIR SINE MIR -61 147 3 3020 164 33 2 chr4_random 647165 647676 -18204137 + MER1A DNA MER1_type 1 527 0 395 38 19 0 chr4_random 648540 648593 -18203220 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 1927 228 59 29 chr4_random 648647 649135 -18202678 + MLT1D LTR MaLR 3 505 0 351 183 10 19 chr4_random 649190 649294 -18202519 + GA-rich Low_complexity Low_complexity 4 106 0 340 107 40 208 chr4_random 649563 649712 -18202101 + L1MA9 LINE L1 6188 6311 -1 473 326 26 26 chr4_random 650702 650895 -18200918 + MLT1I LTR MaLR 48 240 -169 1063 292 69 14 chr4_random 651038 651473 -18200340 + LTR40b LTR ERVL 4 462 0 242 189 0 38 chr4_random 651637 651690 -18200123 + L2 LINE L2 3217 3267 -5 25 51 0 0 chr4_random 651929 651968 -18199845 + AT_rich Low_complexity Low_complexity 1 39 0 24 32 0 0 chr4_random 652029 652060 -18199753 + AT_rich Low_complexity Low_complexity 1 31 0 665 159 0 58 chr4_random 652233 652371 -18199442 + FLAM_C SINE Alu 4 133 0 22 0 0 0 chr4_random 652662 652684 -18199129 + AT_rich Low_complexity Low_complexity 1 22 0 185 0 40 0 chr4_random 653750 653775 -18198038 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 2797 10 0 0 chr4_random 653893 654204 -18197609 - AluYa5 SINE Alu 0 311 1 2459 193 112 83 chr4_random 654314 655199 -18196614 + LTR28 LTR ERV1 1 1020 0 24 67 0 0 chr4_random 656268 656313 -18195500 + AT_rich Low_complexity Low_complexity 1 45 0 1116 187 97 19 chr4_random 656599 656867 -18194946 - AluJo SINE Alu -11 301 13 360 274 103 17 chr4_random 657208 657383 -18194430 + L1ME3A LINE L1 5763 5952 -218 238 203 17 17 chr4_random 657658 657717 -18194096 + (CA)n Simple_repeat Simple_repeat 2 60 0 21 36 0 0 chr4_random 657721 657749 -18194064 + AT_rich Low_complexity Low_complexity 1 28 0 236 148 19 19 chr4_random 658048 658102 -18193711 + (TTG)n Simple_repeat Simple_repeat 1 54 0 588 220 56 59 chr4_random 658351 658678 -18193135 - LTR46 LTR ERV1 -30 430 3 220 298 93 19 chr4_random 658864 659025 -18192788 - MIR SINE MIR -2 260 88 192 371 28 7 chr4_random 659130 659273 -18192540 + MIR SINE MIR 106 251 -11 22 35 0 0 chr4_random 659801 659830 -18191983 + AT_rich Low_complexity Low_complexity 1 29 0 200 222 0 0 chr4_random 660348 660393 -18191420 + (TA)n Simple_repeat Simple_repeat 1 45 0 218 355 132 8 chr4_random 660413 660534 -18191279 - L2 LINE L2 -4 3268 3133 216 0 0 0 chr4_random 660789 660813 -18191000 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1627 240 32 45 chr4_random 661106 661644 -18190169 - LTR55 LTR ERV -17 531 1 844 122 0 30 chr4_random 662513 662644 -18189169 + FLAM_C SINE Alu 1 127 -6 391 280 286 3 chr4_random 663307 663618 -18188195 + L1ME2 LINE L1 4522 4920 -1226 985 210 5 20 chr4_random 663618 663845 -18187968 + AluJo SINE Alu 86 309 0 2245 255 97 42 chr4_random 663875 665030 -18186783 + L1ME2 LINE L1 4942 6148 -16 21 0 0 0 chr4_random 665642 665663 -18186150 + AT_rich Low_complexity Low_complexity 1 21 0 589 308 51 21 chr4_random 665774 666008 -18185805 - MIR SINE MIR -16 246 6 2314 137 8 20 chr4_random 666533 666926 -18184887 - L1PA15 LINE L1 -2 6163 5776 706 300 56 32 chr4_random 667138 667672 -18184141 - L1M4 LINE L1 -2271 3875 3329 1106 185 9 31 chr4_random 667714 667936 -18183877 - AluJb SINE Alu -14 298 82 7401 35 41 0 chr4_random 668101 669292 -18182521 - L1PA5 LINE L1 -3 6151 4944 533 56 0 0 chr4_random 669292 669363 -18182450 + L1PA5 LINE L1 4861 4931 -1215 1777 199 14 22 chr4_random 669372 669924 -18181889 - L1PA15-16 LINE L1 -3637 2509 1955 24 0 0 0 chr4_random 672275 672299 -18179514 + AT_rich Low_complexity Low_complexity 1 24 0 213 39 0 0 chr4_random 672440 672466 -18179347 + (CATG)n Simple_repeat Simple_repeat 3 28 0 24 0 0 0 chr4_random 674873 674897 -18176916 + AT_rich Low_complexity Low_complexity 1 24 0 504 243 101 0 chr4_random 675337 675485 -18176328 - MIR SINE MIR 0 262 100 2646 26 0 0 chr4_random 675636 675939 -18175874 - AluYa5 SINE Alu -8 303 1 488 251 107 32 chr4_random 676329 676516 -18175297 - MER67D LTR ERV1 -8 506 306 1237 202 25 83 chr4_random 676562 676889 -18174924 - MER67D LTR ERV1 -203 311 4 372 268 73 131 chr4_random 676933 677246 -18174567 - L1MEc LINE L1 -6094 302 8 53 49 0 0 chr4_random 677282 677363 -18174450 + AT_rich Low_complexity Low_complexity 1 81 0 23 33 0 0 chr4_random 677395 677425 -18174388 + AT_rich Low_complexity Low_complexity 1 30 0 578 188 0 16 chr4_random 677435 677563 -18174250 - L1MB1 LINE L1 -1 6167 6042 250 255 169 56 chr4_random 677563 677794 -18174019 - Charlie7 DNA MER1_type -1890 722 466 1920 213 55 28 chr4_random 677954 678447 -18173366 + L1MC3 LINE L1 6629 7134 -651 212 175 0 0 chr4_random 679254 679294 -18172519 + T-rich Low_complexity Low_complexity 1 40 0 980 107 0 0 chr4_random 679752 679883 -18171930 - AluSg1 SINE Alu -178 131 1 21 0 0 0 chr4_random 680388 680409 -18171404 + AT_rich Low_complexity Low_complexity 1 21 0 1262 271 99 45 chr4_random 681412 681996 -18169817 - MLT1E2 LTR MaLR -2 624 7 198 0 0 0 chr4_random 682075 682097 -18169716 + (CA)n Simple_repeat Simple_repeat 2 23 0 183 220 0 0 chr4_random 682191 682241 -18169572 + (CA)n Simple_repeat Simple_repeat 2 51 0 2166 136 0 0 chr4_random 682503 682805 -18169008 - AluSx SINE Alu -10 302 1 416 212 159 26 chr4_random 682918 683069 -18168744 + MLT1E3 LTR MaLR 1 171 -483 3973 108 5 49 chr4_random 683097 683728 -18168085 + LTR14B LTR ERVK 6 608 0 1013 306 102 22 chr4_random 683781 684232 -18167581 + MLT1E3 LTR MaLR 136 622 -2 184 151 19 38 chr4_random 684559 684612 -18167201 + GA-rich Low_complexity Low_complexity 3 54 0 202 283 19 0 chr4_random 685855 685908 -18165905 + MIR3 SINE MIR 112 165 -43 25 0 0 0 chr4_random 687168 687193 -18164620 + AT_rich Low_complexity Low_complexity 1 25 0 1603 180 72 67 chr4_random 687464 687853 -18163960 - MER57A LTR ERV1 0 403 13 748 132 0 16 chr4_random 687856 687977 -18163836 - MER57A-int LTR ERV1 -29 7508 7390 265 182 36 0 chr4_random 687998 688053 -18163760 - LTR54B LTR ERV1 -210 288 232 469 176 88 32 chr4_random 688106 688231 -18163582 - LTR54B LTR ERV1 -366 132 1 5541 219 25 14 chr4_random 688282 689501 -18162312 - MER57A-int LTR ERV1 -470 7067 5835 1236 221 51 102 chr4_random 689842 690393 -18161420 - MER57A-int LTR ERV1 -1714 5823 5301 1295 161 0 5 chr4_random 690496 690713 -18161100 - THE1C-int LTR MaLR -1364 216 1 2449 134 5 5 chr4_random 690713 691086 -18160727 - THE1C LTR MaLR 0 375 3 392 235 38 52 chr4_random 691133 691538 -18160275 - MER4-int LTR ERV1 -2561 3385 1757 30 27 0 0 chr4_random 691557 691594 -18160219 + AT_rich Low_complexity Low_complexity 1 37 0 563 161 71 171 chr4_random 691709 691920 -18159893 - MER4-int LTR ERV1 -2878 3453 3264 817 159 13 92 chr4_random 691972 692199 -18159614 - MER4-int LTR ERV1 -3059 3272 3064 264 194 19 94 chr4_random 692173 692331 -18159482 - MER4-int LTR ERV1 -3728 1395 1094 * 283 269 35 14 chr4_random 692303 692444 -18159369 - MER4-int LTR ERV1 -4614 1984 1841 909 224 65 24 chr4_random 692454 692700 -18159113 - MER34C LTR ERV1 -175 410 155 2695 215 31 49 chr4_random 692879 693578 -18158235 - MER4-int LTR ERV1 -6695 842 156 442 269 0 9 chr4_random 693578 693686 -18158127 + MLT1D LTR MaLR 85 191 -314 6301 179 8 7 chr4_random 693686 695543 -18156270 + L1PB1 LINE L1 3922 5782 -369 231 114 0 0 chr4_random 695543 695578 -18156235 + (CA)n Simple_repeat Simple_repeat 2 36 0 6301 179 8 7 chr4_random 695578 695944 -18155869 + L1PB1 LINE L1 5782 6146 -5 684 214 73 62 chr4_random 695967 696256 -18155557 + L1MC5 LINE L1 7026 7317 -644 2152 238 79 26 chr4_random 696774 697435 -18154378 + Charlie1a DNA MER1_type 1 696 -759 1057 158 19 81 chr4_random 697435 697694 -18154119 + L1MA10 LINE L1 6082 6324 -10 1279 174 151 6 chr4_random 697703 698014 -18153799 + Charlie1a DNA MER1_type 701 1056 -399 741 210 135 5 chr4_random 698106 698306 -18153507 + MLT1D LTR MaLR 277 502 -3 210 143 0 0 chr4_random 698811 698846 -18152967 + (GAAAA)n Simple_repeat Simple_repeat 4 38 0 192 427 10 0 chr4_random 699133 699229 -18152584 - MIR SINE MIR -70 138 42 3572 193 18 22 chr4_random 699364 700101 -18151712 - MER50 LTR ERV1 0 734 1 25 31 0 0 chr4_random 700137 700169 -18151644 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr4_random 700276 700299 -18151514 + AT_rich Low_complexity Low_complexity 1 23 0 234 100 25 25 chr4_random 700494 700534 -18151279 - MER4A LTR ERV1 -566 98 59 14621 129 100 50 chr4_random 700574 704531 -18147282 - MER4A-int LTR ERV1 -2 6596 1006 5132 148 88 19 chr4_random 704545 705498 -18146315 - MER4A-int LTR ERV1 -5421 1177 199 2795 83 193 25 chr4_random 705514 705662 -18146151 - MER4A-int LTR ERV1 -6035 563 441 230 0 33 0 chr4_random 705662 705692 -18146121 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2795 83 193 25 chr4_random 705692 706025 -18145788 - MER4A-int LTR ERV1 -6157 441 1 1409 167 37 58 chr4_random 706028 706381 -18145432 - MER4A LTR ERV1 0 664 261 283 153 361 0 chr4_random 706381 706453 -18145360 - MER4A LTR ERV1 -566 98 1 369 291 146 0 chr4_random 706792 707012 -18144801 - L1MC4a LINE L1 -1882 5926 5675 181 182 38 31 chr4_random 707029 707188 -18144625 + (TA)n Simple_repeat Simple_repeat 2 161 0 539 338 41 20 chr4_random 707805 708098 -18143715 - LTR16C LTR ERVL 0 491 193 1469 224 17 14 chr4_random 708364 708712 -18143101 - MER4D LTR ERV1 0 903 555 388 221 23 0 chr4_random 708768 708854 -18142959 - MER49 LTR ERV1 -638 285 198 1653 134 9 94 chr4_random 708863 709205 -18142608 - AluSq SINE Alu 0 313 1 766 297 22 4 chr4_random 709403 709632 -18142181 + MER90 LTR ERV1 382 614 0 432 55 0 0 chr4_random 709818 709873 -18141940 + (TG)n Simple_repeat Simple_repeat 2 56 0 281 47 23 0 chr4_random 709873 709916 -18141897 + (TA)n Simple_repeat Simple_repeat 2 45 0 2275 304 125 35 chr4_random 709966 711432 -18140381 + L2 LINE L2 781 2378 -936 1119 112 0 0 chr4_random 711494 711646 -18140167 + AluSg/x SINE Alu 144 295 -17 280 229 9 9 chr4_random 712258 712363 -18139450 + (TA)n Simple_repeat Simple_repeat 1 105 0 240 200 0 0 chr4_random 712843 712898 -18138915 + GA-rich Low_complexity Low_complexity 2 56 0 300 91 0 0 chr4_random 712932 712976 -18138837 + (GGGA)n Simple_repeat Simple_repeat 3 46 0 1743 189 23 12 chr4_random 713433 713776 -18138037 - MER7A DNA MER2_type 0 346 2 23 78 0 0 chr4_random 713776 713827 -18137986 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr4_random 713910 713946 -18137867 + AT_rich Low_complexity Low_complexity 1 36 0 31 116 0 0 chr4_random 713976 714140 -18137673 + AT_rich Low_complexity Low_complexity 1 164 0 5502 145 22 1 chr4_random 714503 715445 -18136368 - L1MA3 LINE L1 -27 7697 6736 324 0 0 0 chr4_random 715457 715493 -18136320 + (T)n Simple_repeat Simple_repeat 1 36 0 6970 173 21 14 chr4_random 715883 717274 -18134539 - L1MA3 LINE L1 -827 6738 5339 12475 203 56 4 chr4_random 717276 721032 -18130781 - L1MA3 LINE L1 -3270 4295 13 25 0 0 0 chr4_random 721181 721206 -18130607 + AT_rich Low_complexity Low_complexity 1 25 0 281 193 12 48 chr4_random 721378 721461 -18130352 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 27 49 0 0 chr4_random 721533 721574 -18130239 + AT_rich Low_complexity Low_complexity 1 41 0 4527 196 33 37 chr4_random 721598 722073 -18129740 - L1MA9 LINE L1 -32 6168 5693 383 38 19 0 chr4_random 722073 722126 -18129687 + (CA)n Simple_repeat Simple_repeat 2 55 0 4527 196 33 37 chr4_random 722126 723410 -18128403 - L1MA9 LINE L1 -507 5693 4406 1529 263 55 28 chr4_random 723455 723889 -18127924 - L1MA9 LINE L1 -5506 449 4 25 31 0 0 chr4_random 723976 724008 -18127805 + AT_rich Low_complexity Low_complexity 1 32 0 341 161 0 0 chr4_random 724262 724318 -18127495 + AluJb SINE Alu 86 141 -161 276 77 0 0 chr4_random 724424 724463 -18127350 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr4_random 724465 724486 -18127327 + AT_rich Low_complexity Low_complexity 1 21 0 351 78 0 0 chr4_random 724639 724690 -18127123 + (TA)n Simple_repeat Simple_repeat 2 52 0 22 0 0 0 chr4_random 727401 727423 -18124390 + AT_rich Low_complexity Low_complexity 1 22 0 208 234 21 0 chr4_random 727445 727492 -18124321 + GA-rich Low_complexity Low_complexity 2 49 0 216 0 0 0 chr4_random 727675 727699 -18124114 + (TA)n Simple_repeat Simple_repeat 2 25 0 2573 46 0 3 chr4_random 727699 728006 -18123807 - AluY SINE Alu -5 306 1 27 0 0 0 chr4_random 728006 728033 -18123780 + AT_rich Low_complexity Low_complexity 1 27 0 339 331 61 22 chr4_random 730145 730326 -18121487 + MIR SINE MIR 75 262 0 2300 172 31 40 chr4_random 730356 730833 -18120980 - L1MA9 LINE L1 -45 6331 5859 2569 201 35 7 chr4_random 730843 731434 -18120379 - L1MA9 LINE L1 -1254 4956 4349 781 192 33 0 chr4_random 731435 731586 -18120227 + L1PB4 LINE L1 4089 4244 -1902 2196 164 9 35 chr4_random 731586 732018 -18119795 + L1PB4 LINE L1 5734 6156 0 1008 259 20 19 chr4_random 732020 732824 -18118989 - L1MA9 LINE L1 -4279 1932 961 401 378 47 29 chr4_random 733681 734065 -18117748 - L1MA9 LINE L1 -5750 391 1 261 304 22 11 chr4_random 734314 734406 -18117407 - MIR SINE MIR -133 129 37 313 364 64 55 chr4_random 734852 735195 -18116618 - L2 LINE L2 -1 3271 2926 1056 233 65 106 chr4_random 735894 736421 -18115392 - MLT1D LTR MaLR 0 505 1 28 48 0 0 chr4_random 736599 736641 -18115172 + AT_rich Low_complexity Low_complexity 1 42 0 180 254 0 0 chr4_random 736931 736990 -18114823 + GA-rich Low_complexity Low_complexity 3 61 0 845 142 0 8 chr4_random 737739 737873 -18113940 + AluSq/x SINE Alu 1 133 -179 2278 95 3 0 chr4_random 737881 738186 -18113627 + AluSq SINE Alu 1 306 -7 2112 129 39 36 chr4_random 738709 739072 -18112741 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr4_random 741301 741326 -18110487 + AT_rich Low_complexity Low_complexity 1 25 0 13195 155 20 0 chr4_random 742119 745244 -18106569 - L1PA11 LINE L1 0 6174 2996 410 249 99 17 chr4_random 745551 745732 -18106081 + MIR SINE MIR 53 248 -14 28 29 0 0 chr4_random 746037 746072 -18105741 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr4_random 746128 746165 -18105648 + AT_rich Low_complexity Low_complexity 1 37 0 438 309 108 43 chr4_random 746273 746744 -18105069 - L2 LINE L2 -19 3294 2782 320 279 87 58 chr4_random 746818 747026 -18104787 + MIR SINE MIR 49 262 0 233 354 112 19 chr4_random 747024 747230 -18104583 - L2 LINE L2 -604 2710 2486 * 25 65 0 0 chr4_random 747324 747370 -18104443 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr4_random 747647 747670 -18104143 + AT_rich Low_complexity Low_complexity 1 23 0 33 85 0 0 chr4_random 747933 748015 -18103798 + AT_rich Low_complexity Low_complexity 1 82 0 33 43 0 0 chr4_random 748074 748121 -18103692 + AT_rich Low_complexity Low_complexity 1 47 0 1913 181 2 61 chr4_random 748718 749128 -18102685 + MLT1B LTR MaLR 1 386 -4 287 340 32 63 chr4_random 800000 800253 -18051560 - L2 LINE L2 -385 2929 2685 2069 214 21 14 chr4_random 801074 801906 -18049907 - L1MC2 LINE L1 -31 6306 5296 3829 172 56 47 chr4_random 802966 803230 -18048583 + Tigger3b DNA MER2_type 6 266 -2762 233 57 29 0 chr4_random 803230 803265 -18048548 + (TAA)n Simple_repeat Simple_repeat 3 38 0 3829 172 56 47 chr4_random 803265 803970 -18047843 + Tigger3b DNA MER2_type 266 983 -248 2359 89 43 26 chr4_random 804541 804890 -18046923 + THE1A LTR MaLR 1 355 0 202 291 0 0 chr4_random 805711 805766 -18046047 + T-rich Low_complexity Low_complexity 4 58 0 261 391 78 6 chr4_random 806621 806800 -18045013 - MER89-int LTR ERV1 -4064 2737 2546 1139 52 0 19 chr4_random 806946 807101 -18044712 - AluYa5 SINE Alu 0 311 160 425 262 16 62 chr4_random 807300 807544 -18044269 - L1PA16 LINE L1 -9 6157 5925 244 0 56 0 chr4_random 808287 808323 -18043490 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 277 146 0 0 chr4_random 808329 808370 -18043443 + L1M4 LINE L1 3519 3559 -2587 1544 178 4 11 chr4_random 808378 808659 -18043154 - AluSc SINE Alu -30 279 1 743 272 61 3 chr4_random 808742 809117 -18042696 - L1MC2 LINE L1 -1621 4525 4129 444 358 58 19 chr4_random 809130 809440 -18042373 + L2 LINE L2 2642 2963 -351 6352 235 40 7 chr4_random 809736 810587 -18041226 - L1 LINE L1 -863 5283 4461 185 0 40 0 chr4_random 810587 810612 -18041201 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 6352 235 40 7 chr4_random 810612 811506 -18040307 - L1 LINE L1 -1685 4461 3482 24 53 0 0 chr4_random 812249 812287 -18039526 + AT_rich Low_complexity Low_complexity 1 38 0 209 365 0 0 chr4_random 812585 812637 -18039176 - L2 LINE L2 -61 3211 3160 2137 123 0 10 chr4_random 813103 813411 -18038402 - AluSq SINE Alu -8 305 1 239 221 0 52 chr4_random 813822 813899 -18037914 - L1M4 LINE L1 -1587 4559 4487 23 68 0 0 chr4_random 815816 815860 -18035953 + AT_rich Low_complexity Low_complexity 1 44 0 32 91 0 0 chr4_random 815914 816002 -18035811 + AT_rich Low_complexity Low_complexity 1 88 0 227 178 0 0 chr4_random 816577 816622 -18035191 + CT-rich Low_complexity Low_complexity 1 45 0 2444 60 3 0 chr4_random 816696 816996 -18034817 + AluY SINE Alu 3 303 -8 12079 245 31 30 chr4_random 817021 823794 -18028019 + L1PB4 LINE L1 14 6858 0 474 157 0 0 chr4_random 823824 823907 -18027906 - L1PA16 LINE L1 -11 6155 6073 9286 191 23 7 chr4_random 823907 826523 -18025290 - L1PA15-16 LINE L1 -4423 2426 1 2671 33 0 0 chr4_random 828358 828664 -18023149 + AluY SINE Alu 1 306 -5 225 270 135 0 chr4_random 829334 829423 -18022390 + L2 LINE L2 1895 1995 -1319 667 317 186 33 chr4_random 829480 830213 -18021600 + L2 LINE L2 2259 3101 -212 1730 196 113 30 chr4_random 830237 830707 -18021106 + LTR22 LTR ERVK 1 509 0 1359 150 127 8 chr4_random 830730 830990 -18020823 - L1MC1 LINE L1 -20 6313 6023 261 306 0 14 chr4_random 831814 831886 -18019927 - L3 LINE CR1 -132 1445 1375 31 0 0 0 chr4_random 832359 832390 -18019423 + AT_rich Low_complexity Low_complexity 1 31 0 962 108 0 43 chr4_random 832847 833033 -18018780 + (TTCTC)n Simple_repeat Simple_repeat 1 178 0 332 119 17 0 chr4_random 833033 833092 -18018721 + CT-rich Low_complexity Low_complexity 4 63 0 191 370 25 0 chr4_random 833173 833254 -18018559 + L2 LINE L2 3186 3268 -4 6091 154 51 28 chr4_random 833778 834042 -18017771 + Tigger3b DNA MER2_type 6 263 -2765 206 62 31 0 chr4_random 834042 834074 -18017739 + (TAA)n Simple_repeat Simple_repeat 3 35 0 6091 154 51 28 chr4_random 834074 835007 -18016806 + Tigger3b DNA MER2_type 263 1230 -1 331 299 8 30 chr4_random 835058 835192 -18016621 + L2 LINE L2 3150 3280 -33 23 33 0 0 chr4_random 835483 835513 -18016300 + AT_rich Low_complexity Low_complexity 1 30 0 256 206 11 11 chr4_random 837641 837733 -18014080 + (TA)n Simple_repeat Simple_repeat 2 93 0 813 186 0 0 chr4_random 837956 838096 -18013717 + FRAM SINE Alu 21 160 -16 844 43 17 8 chr4_random 838109 838226 -18013587 + (GAAA)n Simple_repeat Simple_repeat 3 120 0 194 140 0 20 chr4_random 838384 838434 -18013379 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 70 0 0 chr4_random 838902 838945 -18012868 + AT_rich Low_complexity Low_complexity 1 43 0 192 267 0 0 chr4_random 839163 839223 -18012590 + (TA)n Simple_repeat Simple_repeat 2 61 0 1071 255 292 69 chr4_random 840788 841682 -18010131 + MER52A LTR ERV1 663 1755 0 1774 179 33 33 chr4_random 841854 842218 -18009595 - THE1B LTR MaLR 0 364 1 10319 118 32 6 chr4_random 842218 843756 -18008057 - THE1B-int LTR MaLR 0 1580 2 1876 147 48 34 chr4_random 843761 844116 -18007697 - THE1B LTR MaLR -4 360 1 338 346 35 48 chr4_random 844695 844923 -18006890 - L2 LINE L2 -405 2909 2685 23 54 0 0 chr4_random 845763 845800 -18006013 + AT_rich Low_complexity Low_complexity 1 37 0 219 154 26 0 chr4_random 846440 846479 -18005334 + GA-rich Low_complexity Low_complexity 2 41 0 234 419 23 0 chr4_random 846627 846756 -18005057 - L2 LINE L2 -38 3234 3103 221 241 35 69 chr4_random 847073 847160 -18004653 + L2 LINE L2 3229 3312 -1 22 35 0 0 chr4_random 847383 847412 -18004401 + AT_rich Low_complexity Low_complexity 1 29 0 2174 107 13 0 chr4_random 848111 848419 -18003394 + AluSp SINE Alu 2 313 0 237 308 35 133 chr4_random 848610 848896 -18002917 + L3 LINE CR1 303 560 -1017 458 322 35 22 chr4_random 848899 849126 -18002687 + L3 LINE CR1 1236 1465 -112 5948 77 16 0 chr4_random 849210 850000 -18001813 - L1PA7 LINE L1 0 6154 5352 23 33 0 0 chr4_random 850109 850139 -18001674 + AT_rich Low_complexity Low_complexity 1 30 0 425 305 109 0 chr4_random 850143 850317 -18001496 - MIR SINE MIR 0 262 70 22 56 0 0 chr4_random 850713 850749 -18001064 + AT_rich Low_complexity Low_complexity 1 36 0 1013 177 35 35 chr4_random 851058 851290 -18000523 + MSTB1 LTR MaLR 1 232 -200 324 149 15 30 chr4_random 851280 851347 -18000466 + MSTB1 LTR MaLR 366 431 -1 * 1784 179 61 25 chr4_random 851789 851853 -17999960 - L1MC2 LINE L1 -5 6339 6279 4586 142 52 13 chr4_random 851853 852648 -17999165 - LTR1B LTR ERV1 0 826 1 1784 179 61 25 chr4_random 852648 852990 -17998823 - L1MC2 LINE L1 -65 6279 5918 1295 183 58 0 chr4_random 853020 853315 -17998498 - L1MCa LINE L1 -3949 2615 2304 741 200 69 24 chr4_random 853304 853551 -17998262 - L1MCa LINE L1 -4541 2094 1675 * 2777 244 38 73 chr4_random 853540 854453 -17997360 - L1MCa LINE L1 -5183 884 4 698 203 92 20 chr4_random 856225 856378 -17995435 + FRAM SINE Alu 1 164 -2 1560 179 3 58 chr4_random 856402 856732 -17995081 + AluJo SINE Alu 1 312 0 524 215 0 9 chr4_random 856747 856854 -17994959 + FRAM SINE Alu 46 151 -25 685 320 84 63 chr4_random 857065 857626 -17994187 + L2 LINE L2 2628 3176 -137 836 228 109 0 chr4_random 857626 857828 -17993985 + MER58A DNA MER1_type 1 224 0 194 0 39 0 chr4_random 857836 857862 -17993951 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 685 320 84 63 chr4_random 857862 857976 -17993837 + L2 LINE L2 3182 3313 0 334 310 30 61 chr4_random 858014 858068 -17993745 + MIR SINE MIR 53 107 -155 2714 187 14 36 chr4_random 858068 858630 -17993183 + MLT2B3 LTR ERVL 5 554 0 334 310 30 61 chr4_random 858630 858772 -17993041 + MIR SINE MIR 107 243 -19 2259 133 12 28 chr4_random 858846 859246 -17992567 + L1PA13 LINE L1 5762 6155 -8 255 130 0 37 chr4_random 859563 859617 -17992196 + L1MC4 LINE L1 6652 6703 -1339 1289 248 72 62 chr4_random 859633 860116 -17991697 - MLT1D LTR MaLR -12 493 6 306 73 0 0 chr4_random 860125 860166 -17991647 + (TG)n Simple_repeat Simple_repeat 2 42 0 190 222 0 0 chr4_random 860239 860275 -17991538 - MIR SINE MIR -157 105 70 201 133 0 0 chr4_random 860674 860704 -17991109 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr4_random 861557 861592 -17990221 + AT_rich Low_complexity Low_complexity 1 35 0 2135 95 0 29 chr4_random 862121 862437 -17989376 - AluY SINE Alu -4 307 1 24 53 0 0 chr4_random 862695 862733 -17989080 + AT_rich Low_complexity Low_complexity 1 38 0 1567 125 94 4 chr4_random 863170 863426 -17988387 + AluSx SINE Alu 26 304 -8 216 0 0 0 chr4_random 863599 863623 -17988190 + (TA)n Simple_repeat Simple_repeat 2 25 0 257 279 76 68 chr4_random 863687 864096 -17987717 + L1MC/D LINE L1 807 1187 -5018 447 286 73 17 chr4_random 864245 864546 -17987267 + L1MC/D LINE L1 1859 2176 -4220 234 308 55 64 chr4_random 864560 865200 -17986613 + L1MC/D LINE L1 2189 2822 -3393 1730 252 147 50 chr4_random 865243 866730 -17985083 + L1MC/D LINE L1 3009 4639 -1576 1169 217 65 12 chr4_random 866779 867116 -17984697 + L1MA7 LINE L1 5937 6291 0 823 264 35 13 chr4_random 867345 867656 -17984157 + L1MC/D LINE L1 4831 5148 -1067 377 202 83 0 chr4_random 867724 867833 -17983980 - L1ME LINE L1 -669 5497 5380 7224 50 0 0 chr4_random 867909 868865 -17982948 - L1PA5 LINE L1 0 6154 5197 9462 48 2 0 chr4_random 868865 870077 -17981736 + L1P LINE L1 2252 3465 -2681 632 252 21 58 chr4_random 870175 870417 -17981396 + MLT1D LTR MaLR 7 239 -266 403 204 43 11 chr4_random 870457 870550 -17981263 + MLT1D LTR MaLR 295 390 0 435 254 15 9 chr4_random 870683 870849 -17980964 + L1MC/D LINE L1 5249 5417 -816 270 289 0 0 chr4_random 871853 871929 -17979884 + L1MC4 LINE L1 6494 6569 -1473 180 0 0 0 chr4_random 871940 871960 -17979853 + (CA)n Simple_repeat Simple_repeat 2 21 0 406 277 87 74 chr4_random 871962 872352 -17979461 + L1MC4 LINE L1 6709 7103 -939 1251 212 36 33 chr4_random 872360 872667 -17979146 + MLT1A2 LTR MaLR 67 374 0 266 307 63 16 chr4_random 872667 872794 -17979019 + L1MC4 LINE L1 7754 7886 -156 315 294 37 0 chr4_random 873414 873523 -17978290 - MER5B DNA MER1_type -3 175 63 21 57 0 0 chr4_random 874127 874162 -17977651 + AT_rich Low_complexity Low_complexity 1 35 0 249 163 0 0 chr4_random 875092 875141 -17976672 + (TG)n Simple_repeat Simple_repeat 2 50 0 1730 204 29 8 chr4_random 875272 875654 -17976159 + MLT1B LTR MaLR 1 390 0 195 306 81 48 chr4_random 876060 876184 -17975629 + MIR SINE MIR 23 150 -112 1018 224 109 37 chr4_random 876193 876515 -17975298 + MER2 DNA MER2_type 1 345 0 236 194 65 32 chr4_random 877613 877675 -17974138 + L1MC/D LINE L1 5778 5841 -470 204 318 71 80 chr4_random 877836 878075 -17973738 - MIR SINE MIR -11 251 15 21 36 0 0 chr4_random 878126 878154 -17973659 + AT_rich Low_complexity Low_complexity 1 28 0 2588 33 0 3 chr4_random 879213 879518 -17972295 - AluY SINE Alu -6 305 2 252 100 0 0 chr4_random 880460 880500 -17971313 + (TA)n Simple_repeat Simple_repeat 2 41 0 1980 136 0 0 chr4_random 880500 880786 -17971027 - AluSx SINE Alu -26 286 1 564 298 139 5 chr4_random 881315 881523 -17970290 + MIR SINE MIR 24 259 -3 252 0 0 0 chr4_random 881996 882024 -17969789 + (TG)n Simple_repeat Simple_repeat 2 29 0 34 24 0 0 chr4_random 882064 882105 -17969708 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr4_random 882155 882177 -17969636 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4_random 883062 883090 -17968723 + AT_rich Low_complexity Low_complexity 1 28 0 2135 128 18 39 chr4_random 883577 883960 -17967853 + THE1C LTR MaLR 1 375 0 1289 202 38 59 chr4_random 884622 884994 -17966819 - MLT1A1 LTR MaLR 0 365 2 1179 271 47 0 chr4_random 885966 886287 -17965526 + MER58B DNA MER1_type 6 341 0 1833 167 140 16 chr4_random 886753 887131 -17964682 + MSTA LTR MaLR 1 425 -3 22 35 0 0 chr4_random 887952 887981 -17963832 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr4_random 888075 888114 -17963699 + AT_rich Low_complexity Low_complexity 1 39 0 31 26 0 0 chr4_random 888941 888979 -17962834 + AT_rich Low_complexity Low_complexity 1 38 0 1945 118 0 11 chr4_random 889433 889713 -17962100 + AluSq SINE Alu 1 277 -36 2635 191 162 21 chr4_random 889987 890876 -17960937 - L1MC2 LINE L1 -8 6336 5276 1956 159 0 6 chr4_random 890958 891272 -17960541 + AluSx SINE Alu 1 312 0 2207 169 21 30 chr4_random 891964 892396 -17959417 - MSTA LTR MaLR 0 428 1 1197 296 128 28 chr4_random 893521 894092 -17957721 + L2 LINE L2 1931 2558 -756 202 291 0 0 chr4_random 894549 894604 -17957209 + T-rich Low_complexity Low_complexity 4 58 0 25 75 0 0 chr4_random 896035 896088 -17955725 + AT_rich Low_complexity Low_complexity 1 53 0 371 282 64 0 chr4_random 896204 896314 -17955499 - L2 LINE L2 -6 3307 3191 508 351 57 17 chr4_random 896662 896958 -17954855 - L2 LINE L2 -365 2949 2642 786 272 61 3 chr4_random 896971 897346 -17954467 + L1M4 LINE L1 4129 4525 -1621 2226 96 7 3 chr4_random 897429 897732 -17954081 + AluY SINE Alu 1 304 -7 531 386 67 18 chr4_random 897791 898226 -17953587 - L2 LINE L2 -2527 787 332 267 0 0 0 chr4_random 899307 899339 -17952474 - L1PA4 LINE L1 -193 5961 5930 1671 39 0 0 chr4_random 899339 899545 -17952268 + L1PA4 LINE L1 5948 6153 -2 219 362 40 13 chr4_random 900041 900190 -17951623 - L2 LINE L2 -879 2435 2283 408 306 109 50 chr4_random 900319 900916 -17950897 - L1MC2 LINE L1 -1316 4830 4199 551 156 28 0 chr4_random 901955 902064 -17949749 + LTR19A LTR ERV1 374 485 -1 990 118 0 20 chr4_random 902065 902217 -17949596 + LTR19A-int LTR ERV1 1 149 -5437 5045 126 47 28 chr4_random 902228 903178 -17948635 + LTR19A-int LTR ERV1 278 1323 -4458 * 28773 73 28 37 chr4_random 903172 904144 -17947669 + LTR19A-int LTR ERV1 1436 2416 -3170 2188 92 0 0 chr4_random 904144 904438 -17947375 + AluY SINE Alu 14 307 -4 28773 73 28 37 chr4_random 904438 906897 -17944916 + LTR19A-int LTR ERV1 2416 4823 -763 2223 71 7 16 chr4_random 906897 907206 -17944607 - AluY SINE Alu -5 306 1 28773 73 28 37 chr4_random 907206 907963 -17943850 + LTR19A-int LTR ERV1 4823 5586 0 2179 155 55 2 chr4_random 907963 908382 -17943431 + LTR19A LTR ERV1 1 441 -45 306 0 0 0 chr4_random 908384 908418 -17943395 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 24 32 0 0 chr4_random 908876 908907 -17942906 + AT_rich Low_complexity Low_complexity 1 31 0 25 51 0 0 chr4_random 909075 909114 -17942699 + AT_rich Low_complexity Low_complexity 1 39 0 221 233 0 0 chr4_random 909303 909346 -17942467 + CT-rich Low_complexity Low_complexity 3 45 0 30 59 0 0 chr4_random 910530 910581 -17941232 + AT_rich Low_complexity Low_complexity 1 51 0 463 156 0 52 chr4_random 911079 911175 -17940638 + THE1C LTR MaLR 1 91 -284 8273 163 29 30 chr4_random 911291 912870 -17938943 + THE1C-int LTR MaLR 4 1580 0 1667 178 49 35 chr4_random 912870 913240 -17938573 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr4_random 913817 913859 -17937954 + AT_rich Low_complexity Low_complexity 1 42 0 2293 196 7 5 chr4_random 913870 914303 -17937510 - Tigger2a DNA MER2_type 0 434 1 21 0 0 0 chr4_random 914491 914512 -17937301 + AT_rich Low_complexity Low_complexity 1 21 0 373 273 29 29 chr4_random 914519 914658 -17937155 + L1MC5 LINE L1 6614 6752 -1209 1921 153 32 42 chr4_random 914857 915236 -17936577 - THE1C LTR MaLR 0 375 1 439 273 66 37 chr4_random 915281 915768 -17936045 + L1MC5 LINE L1 7268 7768 -193 13444 153 13 31 chr4_random 916140 919324 -17932489 + L1P3 LINE L1 8 3257 -3204 1889 92 17 0 chr4_random 920082 920374 -17931439 + L1P3 LINE L1 3261 3557 -2904 1608 199 10 7 chr4_random 920471 920773 -17931040 - AluJo SINE Alu -9 303 1 296 246 0 36 chr4_random 921133 921243 -17930570 + T-rich Low_complexity Low_complexity 4 109 0 1620 190 93 3 chr4_random 921651 922027 -17929786 + L1PB4 LINE L1 5755 6162 0 2218 117 0 0 chr4_random 922062 922369 -17929444 - AluSx SINE Alu -5 307 1 2533 209 13 0 chr4_random 922672 923136 -17928677 - MER70A LTR ERVL 0 472 3 1502 97 5 14 chr4_random 923297 923504 -17928309 + AluSg/x SINE Alu 94 298 -12 1477 263 117 49 chr4_random 923555 924164 -17927649 - MLT1E1 LTR MaLR -4 650 1 939 308 64 21 chr4_random 924501 924756 -17927057 - MLT1D LTR MaLR 0 505 262 2008 143 162 5 chr4_random 924756 925126 -17926687 - MSTA LTR MaLR 0 428 1 939 308 64 21 chr4_random 925126 925354 -17926459 - MLT1D LTR MaLR -243 262 1 180 0 0 0 chr4_random 925358 925378 -17926435 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 25 0 0 0 chr4_random 925528 925553 -17926260 + AT_rich Low_complexity Low_complexity 1 25 0 738 296 144 39 chr4_random 926072 927341 -17924472 + HAL1 LINE L1 844 2245 -262 21 0 0 0 chr4_random 927437 927458 -17924355 + AT_rich Low_complexity Low_complexity 1 21 0 2556 57 0 0 chr4_random 927569 927870 -17923943 - AluY SINE Alu -10 301 1 2346 169 142 12 chr4_random 927910 928468 -17923345 + LTR24C LTR ERV1 6 635 0 433 285 50 62 chr4_random 928482 928990 -17922823 + LTR24C-int LTR ERV1 15 650 -4473 1887 129 39 0 chr4_random 929206 929486 -17922327 - AluSc SINE Alu -18 291 1 213 276 0 46 chr4_random 930041 930128 -17921685 + CT-rich Low_complexity Low_complexity 3 85 0 4711 153 10 9 chr4_random 931640 932457 -17919356 + L1PA16 LINE L1 5340 6157 -9 1318 20 0 0 chr4_random 932653 932804 -17919009 + AluYa5 SINE Alu 158 308 -3 261 391 78 6 chr4_random 932955 933134 -17918679 + MER110-int LTR ERV1 2546 2737 -4064 1008 173 156 72 chr4_random 933195 933541 -17918272 - THE1C LTR MaLR 0 375 1 3323 151 19 0 chr4_random 934056 934573 -17917240 + MER1A DNA MER1_type 1 527 0 333 333 67 62 chr4_random 935194 935728 -17916085 + MER110-int LTR ERV1 2017 2553 -2094 21 0 0 0 chr4_random 936285 936306 -17915507 + AT_rich Low_complexity Low_complexity 1 21 0 1583 75 25 0 chr4_random 936427 936627 -17915186 - AluY SINE Alu -11 300 96 563 201 0 81 chr4_random 936844 936932 -17914881 + LTR24C LTR ERV1 485 558 -77 1195 391 75 9 chr4_random 936932 937280 -17914533 + THE1C LTR MaLR 5 375 0 563 201 0 81 chr4_random 937280 937340 -17914473 + LTR24C LTR ERV1 558 621 -14 233 176 0 0 chr4_random 937364 937415 -17914398 - L1MA3 LINE L1 -8 6297 6247 257 237 44 26 chr4_random 937799 937913 -17913900 - LTR48 LTR ERV1 -50 737 622 828 125 0 44 chr4_random 937913 938049 -17913764 + AluSg/x SINE Alu 172 301 -9 1930 154 82 55 chr4_random 938069 938485 -17913328 - LTR49 LTR ERV1 -168 427 1 21 0 0 0 chr4_random 938672 938693 -17913120 + AT_rich Low_complexity Low_complexity 1 21 0 3882 152 6 65 chr4_random 939520 940246 -17911567 - LTR8 LTR ERV1 -8 683 1 208 364 174 5 chr4_random 940370 940554 -17911259 - MIR SINE MIR -28 234 20 289 282 32 90 chr4_random 940955 941143 -17910670 - MER92C LTR ERV1 -373 181 5 198 0 0 0 chr4_random 941165 941187 -17910626 + (CA)n Simple_repeat Simple_repeat 1 22 0 1286 255 114 10 chr4_random 941789 942239 -17909574 + MER110A LTR ERV1 1 477 0 22 56 0 0 chr4_random 942612 942648 -17909165 + AT_rich Low_complexity Low_complexity 1 36 0 1093 226 75 24 chr4_random 942971 943347 -17908466 - LTR37A LTR ERV1 -27 399 5 531 250 27 22 chr4_random 943357 943541 -17908272 - MER110-int LTR ERV1 -694 4242 4058 2165 148 89 5 chr4_random 943617 944010 -17907803 - MSTA LTR MaLR -2 426 1 1000 259 120 43 chr4_random 944208 944806 -17907007 - LTR48B LTR ERV1 0 644 1 906 159 18 6 chr4_random 945136 945299 -17906514 - MER41E LTR ERV1 -77 435 271 382 185 22 43 chr4_random 945437 945529 -17906284 - LTR23 LTR ERV1 -347 90 1 1766 170 34 3 chr4_random 945536 945830 -17905983 - AluSx SINE Alu -7 305 3 301 380 27 14 chr4_random 946733 947025 -17904788 - MER110-int LTR ERV1 -2098 2549 2254 2599 173 34 97 chr4_random 947034 947869 -17903944 - MER110-int LTR ERV1 -3172 4948 4167 24 0 0 0 chr4_random 947918 947942 -17903871 + AT_rich Low_complexity Low_complexity 1 24 0 5583 156 23 7 chr4_random 947942 949350 -17902463 - L1PB1 LINE L1 -3 6148 4717 2359 89 43 26 chr4_random 949935 950284 -17901529 - THE1A LTR MaLR 0 355 1 1667 83 4 13 chr4_random 950284 950512 -17901301 - THE1A-int LTR MaLR 0 1580 1355 2269 121 25 25 chr4_random 950535 950890 -17900923 - THE1A LTR MaLR 0 355 1 1646 187 11 0 chr4_random 951064 951369 -17900444 - AluJb SINE Alu 0 308 1 1353 238 75 19 chr4_random 951579 951953 -17899860 + MSTD LTR MaLR 1 395 -1 225 0 0 0 chr4_random 953359 953384 -17898429 + (TA)n Simple_repeat Simple_repeat 1 25 0 369 43 0 0 chr4_random 953988 954035 -17897778 + (CA)n Simple_repeat Simple_repeat 2 48 0 393 22 0 0 chr4_random 954769 954815 -17896998 + (CA)n Simple_repeat Simple_repeat 2 47 0 996 257 114 43 chr4_random 955189 955527 -17896286 - MLT1E LTR MaLR -10 582 171 321 26 0 0 chr4_random 955527 955565 -17896248 + (GA)n Simple_repeat Simple_repeat 1 38 0 996 257 114 43 chr4_random 955565 955723 -17896090 - MLT1E LTR MaLR -421 171 26 717 311 27 14 chr4_random 955750 956043 -17895770 - L1MCc LINE L1 -4995 1428 1132 219 146 0 0 chr4_random 956121 956162 -17895651 + (TC)n Simple_repeat Simple_repeat 2 42 0 258 278 9 28 chr4_random 956674 956782 -17895031 - L1MCc LINE L1 -6294 129 24 731 287 108 26 chr4_random 956812 957153 -17894660 + L2 LINE L2 2244 2612 -702 1980 144 55 23 chr4_random 957153 957501 -17894312 - THE1B LTR MaLR 0 364 6 9807 124 27 36 chr4_random 957506 959101 -17892712 - THE1B-int LTR MaLR 0 1580 1 2168 147 31 6 chr4_random 959101 959456 -17892357 - THE1B LTR MaLR 0 364 1 1028 301 53 21 chr4_random 959462 960006 -17891807 + L2 LINE L2 2621 3184 -129 1378 234 130 38 chr4_random 960009 960258 -17891555 + MLT2B1 LTR ERVL 1 226 -294 213 39 0 0 chr4_random 960258 960284 -17891529 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1378 234 130 38 chr4_random 960284 960503 -17891310 + MLT2B1 LTR ERVL 226 512 -8 379 271 57 29 chr4_random 960540 960680 -17891133 + L2 LINE L2 3162 3305 -8 323 256 26 0 chr4_random 960856 960934 -17890879 - MIR SINE MIR -179 83 4 1730 161 44 19 chr4_random 960961 961327 -17890486 + THE1C LTR MaLR 1 375 0 21 57 0 0 chr4_random 961415 961450 -17890363 + AT_rich Low_complexity Low_complexity 1 35 0 481 296 70 14 chr4_random 962168 962455 -17889358 + L1ME4a LINE L1 5545 5847 -274 30 45 0 0 chr4_random 963728 963772 -17888041 + AT_rich Low_complexity Low_complexity 1 44 0 200 170 170 0 chr4_random 964134 964181 -17887632 - L2 LINE L2 -3 3269 3215 210 297 0 0 chr4_random 964447 964511 -17887302 + GA-rich Low_complexity Low_complexity 4 67 0 268 351 26 0 chr4_random 964737 964888 -17886925 - MER117 DNA MER1_type -39 158 4 278 275 25 42 chr4_random 964969 965089 -17886724 - L2 LINE L2 -95 3218 3101 789 302 183 29 chr4_random 965174 965694 -17886119 - L2 LINE L2 -338 2976 2377 888 307 61 26 chr4_random 965704 966082 -17885731 - MLT1I LTR MaLR -2 407 17 1157 294 133 31 chr4_random 966108 966203 -17885610 - L2 LINE L2 -963 2351 2267 1443 173 92 8 chr4_random 966203 966493 -17885320 + AluSx SINE Alu 1 312 0 1157 294 133 31 chr4_random 966493 967063 -17884750 - L2 LINE L2 -1047 2267 1617 1047 305 55 14 chr4_random 967933 968372 -17883441 - L1MC4a LINE L1 -849 6959 6503 4595 201 46 71 chr4_random 968635 970532 -17881281 + MER52A LTR ERV1 1 1754 -1 410 282 87 67 chr4_random 970546 970741 -17881072 - L2 LINE L2 -724 2590 2392 337 262 0 12 chr4_random 970761 970845 -17880968 - MLT1I LTR MaLR -4 405 323 25 0 0 0 chr4_random 971318 971343 -17880470 + AT_rich Low_complexity Low_complexity 1 25 0 281 197 16 0 chr4_random 971432 971493 -17880320 - MLT1E2 LTR MaLR 0 624 563 588 217 0 9 chr4_random 971493 971651 -17880162 - FLAM_C SINE Alu 0 160 4 1467 270 88 24 chr4_random 971657 972124 -17879689 - MLT1E2 LTR MaLR -56 570 74 633 201 67 12 chr4_random 972135 972369 -17879444 - MLT1A1 LTR MaLR 0 365 28 387 258 129 8 chr4_random 972389 972513 -17879300 - MLT1E1 LTR MaLR -515 139 1 247 278 31 41 chr4_random 973842 973939 -17877874 + MIR SINE MIR 127 222 -40 10125 210 121 4 chr4_random 974536 976902 -17874911 + L1P5 LINE L1 1377 3466 -3480 185 0 40 0 chr4_random 976902 976927 -17874886 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 10125 210 121 4 chr4_random 976927 978276 -17873537 + L1P5 LINE L1 3466 6586 -360 247 172 94 0 chr4_random 978249 978313 -17873500 + L1MC4 LINE L1 7429 7498 -1339 * 200 250 0 0 chr4_random 978316 978356 -17873457 + (TA)n Simple_repeat Simple_repeat 2 41 0 195 162 0 0 chr4_random 978371 978408 -17873405 + (TG)n Simple_repeat Simple_repeat 2 38 0 2569 87 5 89 chr4_random 978436 978883 -17872930 + L1PB1 LINE L1 5743 6151 0 209 57 29 0 chr4_random 978890 978925 -17872888 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 1214 266 98 35 chr4_random 978926 979761 -17872052 + L1MCa LINE L1 934 1923 -4503 235 225 72 16 chr4_random 979828 979923 -17871890 + L1MCa LINE L1 2094 2169 -4257 633 194 8 61 chr4_random 979975 980169 -17871644 + L1MD1 LINE L1 5672 5823 -341 722 247 12 0 chr4_random 980639 980805 -17871008 + FRAM SINE Alu 1 168 -8 25 0 0 0 chr4_random 980810 980835 -17870978 + AT_rich Low_complexity Low_complexity 1 25 0 2540 191 29 16 chr4_random 981844 982394 -17869419 + MER89 LTR ERV1 1 557 -2 1927 109 28 65 chr4_random 982521 982843 -17868970 - AluSx SINE Alu -2 310 1 21 71 0 0 chr4_random 983193 983235 -17868578 + AT_rich Low_complexity Low_complexity 1 42 0 482 377 8 23 chr4_random 983781 984038 -17867775 + MIR SINE MIR 8 260 -2 1359 210 34 91 chr4_random 984186 984681 -17867132 + MLT1C LTR MaLR 1 467 0 477 345 26 22 chr4_random 984907 985139 -17866674 + MIR SINE MIR 20 252 -10 203 359 0 26 chr4_random 985930 986047 -17865766 + L3 LINE CR1 595 708 -869 1166 276 27 39 chr4_random 986615 986808 -17865005 - L1ME3A LINE L1 -71 6099 5905 2210 108 10 0 chr4_random 986808 987114 -17864699 - AluSg SINE Alu -1 309 1 1166 276 27 39 chr4_random 987114 987434 -17864379 - L1ME3A LINE L1 -265 5905 5592 267 31 0 0 chr4_random 987472 987504 -17864309 + (CA)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr4_random 987568 987593 -17864220 + AT_rich Low_complexity Low_complexity 1 25 0 2618 202 15 67 chr4_random 987607 988320 -17863493 - L1MD1 LINE L1 0 6242 5567 2715 237 70 47 chr4_random 988361 989124 -17862689 - L1MD1 LINE L1 -1827 4319 3575 1649 189 4 0 chr4_random 989124 989405 -17862408 + AluSx SINE Alu 1 282 -30 2715 237 70 47 chr4_random 989405 989460 -17862353 - L1MD1 LINE L1 -2571 3575 3523 244 0 56 0 chr4_random 989460 989496 -17862317 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2715 237 70 47 chr4_random 989496 989795 -17862018 - L1MD1 LINE L1 -2623 3523 3175 1058 208 5 0 chr4_random 989795 990002 -17861811 + MER2 DNA MER2_type 2 209 -136 936 261 49 23 chr4_random 990202 990632 -17861181 - L1MD1 LINE L1 -2970 3176 2736 28 29 0 0 chr4_random 990805 990840 -17860973 + AT_rich Low_complexity Low_complexity 1 35 0 566 147 37 0 chr4_random 990840 990949 -17860864 - L1MB3 LINE L1 -4 6179 6067 1838 86 0 0 chr4_random 991042 991275 -17860538 + AluSc SINE Alu 1 233 -76 198 0 0 0 chr4_random 991290 991312 -17860501 + (A)n Simple_repeat Simple_repeat 1 22 0 272 391 28 28 chr4_random 992051 992230 -17859583 - MIR SINE MIR -64 198 20 191 36 36 0 chr4_random 992649 992677 -17859136 + (TTG)n Simple_repeat Simple_repeat 2 30 0 291 118 29 15 chr4_random 994264 994332 -17857481 + (TA)n Simple_repeat Simple_repeat 2 70 0 22 56 0 0 chr4_random 994340 994376 -17857437 + AT_rich Low_complexity Low_complexity 1 36 0 201 94 0 0 chr4_random 994712 994744 -17857069 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 476 158 11 0 chr4_random 995373 995468 -17856345 + GA-rich Low_complexity Low_complexity 3 98 0 1161 41 35 0 chr4_random 995468 995640 -17856173 + (GAA)n Simple_repeat Simple_repeat 3 180 0 835 204 0 0 chr4_random 996720 996872 -17854941 - L1PB4 LINE L1 0 6156 6005 959 153 21 98 chr4_random 997716 997952 -17853861 - MER20 DNA MER1_type 0 219 2 273 317 12 0 chr4_random 997960 998042 -17853771 + MER5A DNA MER1_type 24 106 -83 404 325 138 0 chr4_random 998514 998717 -17853096 + MIR SINE MIR 30 260 -2 31 68 0 0 chr4_random 998721 998780 -17853033 + AT_rich Low_complexity Low_complexity 1 59 0 314 224 51 51 chr4_random 999020 999118 -17852695 + L2 LINE L2 3208 3305 -8 1181 314 127 28 chr4_random 1000101 1000756 -17851057 + L2 LINE L2 1977 2696 -618 14169 182 30 12 chr4_random 1000756 1003980 -17847833 - L1MA1 LINE L1 -431 7290 4127 201 39 0 0 chr4_random 1003980 1004006 -17847807 + (TTG)n Simple_repeat Simple_repeat 1 26 0 14169 182 30 12 chr4_random 1004006 1004140 -17847673 - L1MA1 LINE L1 -3594 4127 3997 223 28 56 0 chr4_random 1004140 1004176 -17847637 + (TA)n Simple_repeat Simple_repeat 2 39 0 14169 182 30 12 chr4_random 1004176 1004893 -17846920 - L1MA1 LINE L1 -3724 3997 3130 2136 144 13 0 chr4_random 1004994 1005369 -17846444 - L1MA1 LINE L1 -4356 3209 2830 184 207 0 0 chr4_random 1005369 1005398 -17846415 + MER5A DNA MER1_type 161 189 0 338 319 5 69 chr4_random 1005436 1005640 -17846173 + L2 LINE L2 3123 3313 0 215 208 42 0 chr4_random 1006481 1006529 -17845284 + (CATA)n Simple_repeat Simple_repeat 3 52 0 191 243 0 0 chr4_random 1006848 1006885 -17844928 - L2 LINE L2 -2 3270 3234 304 301 71 18 chr4_random 1007707 1007820 -17843993 + L2 LINE L2 3149 3267 -5 390 257 64 43 chr4_random 1009223 1009363 -17842450 - MLT1K LTR MaLR -41 547 405 303 82 33 16 chr4_random 1010675 1010736 -17841077 + (TA)n Simple_repeat Simple_repeat 1 62 0 1875 194 25 11 chr4_random 1011459 1011820 -17839993 + MLT2D LTR ERVL 1 366 -48 226 71 24 24 chr4_random 1011829 1011871 -17839942 + (TA)n Simple_repeat Simple_repeat 1 42 0 1218 256 55 101 chr4_random 1012234 1012811 -17839002 + MLT1E LTR MaLR 43 593 0 282 346 77 0 chr4_random 1012992 1013096 -17838717 - L2 LINE L2 -5 3308 3197 1275 245 53 39 chr4_random 1013707 1014119 -17837694 + LTR52 LTR ERVL 1 418 -3 1968 138 3 7 chr4_random 1014166 1014464 -17837349 + AluSp SINE Alu 1 297 -16 2044 174 33 33 chr4_random 1014703 1015252 -17836561 + MLT2A1 LTR ERVL 1 554 0 2397 60 24 0 chr4_random 1015646 1015944 -17835869 + AluY SINE Alu 1 305 -6 817 293 35 32 chr4_random 1017085 1017348 -17834465 - L1MDa LINE L1 -6192 348 82 435 38 0 0 chr4_random 1017348 1017401 -17834412 + (TG)n Simple_repeat Simple_repeat 2 54 0 817 293 35 32 chr4_random 1017401 1017451 -17834362 - L1MDa LINE L1 -6458 82 34 822 168 0 0 chr4_random 1017951 1018088 -17833725 + AluSg/x SINE Alu 168 304 -6 382 290 48 7 chr4_random 1018088 1018233 -17833580 + MLT1C LTR MaLR 86 236 -231 1545 215 10 56 chr4_random 1020411 1020820 -17830993 + MSTD LTR MaLR 3 392 -4 346 245 117 58 chr4_random 1020837 1021025 -17830788 - L1M2 LINE L1 -4919 1930 1732 279 154 0 0 chr4_random 1022216 1022281 -17829532 + CT-rich Low_complexity Low_complexity 1 65 0 1070 99 6 0 chr4_random 1023321 1023483 -17828330 + L1PA13 LINE L1 5997 6159 -4 635 256 18 0 chr4_random 1023662 1023830 -17827983 - MLT1F1 LTR MaLR 0 567 397 1160 225 51 30 chr4_random 1023841 1024209 -17827604 - MLT2D LTR ERVL 0 464 90 228 111 0 0 chr4_random 1024209 1024245 -17827568 + (A)n Simple_repeat Simple_repeat 1 36 0 505 266 4 87 chr4_random 1024629 1024858 -17826955 + MER58C DNA MER1_type 2 211 -4 200 200 17 0 chr4_random 1024886 1024946 -17826867 + (TA)n Simple_repeat Simple_repeat 2 62 0 222 279 49 0 chr4_random 1025761 1025822 -17825991 - L2 LINE L2 -10 3303 3240 22 80 0 0 chr4_random 1026273 1026323 -17825490 + AT_rich Low_complexity Low_complexity 1 50 0 77 71 0 0 chr4_random 1026382 1026536 -17825277 + AT_rich Low_complexity Low_complexity 1 154 0 22 56 0 0 chr4_random 1026661 1026697 -17825116 + AT_rich Low_complexity Low_complexity 1 36 0 1910 34 0 0 chr4_random 1026782 1027016 -17824797 + L1PA5 LINE L1 5921 6154 0 246 307 44 35 chr4_random 1027016 1027130 -17824683 - MIR SINE MIR -76 132 18 513 269 46 101 chr4_random 1028112 1028439 -17823374 + MLT1I LTR MaLR 101 409 0 796 262 14 5 chr4_random 1028628 1028842 -17822971 - MER20 DNA MER1_type -3 216 1 1549 93 0 0 chr4_random 1029136 1029352 -17822461 + L1PB1 LINE L1 5936 6151 0 1964 119 7 0 chr4_random 1029570 1029848 -17821965 + AluSg1 SINE Alu 1 280 -29 205 400 61 0 chr4_random 1029895 1030010 -17821803 + MIR SINE MIR 25 146 -62 27 29 0 0 chr4_random 1030043 1030077 -17821736 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr4_random 1030510 1030540 -17821273 + AT_rich Low_complexity Low_complexity 1 30 0 244 261 0 22 chr4_random 1030552 1030644 -17821169 - L1MC4 LINE L1 -1339 6703 6614 193 300 0 0 chr4_random 1030689 1030739 -17821074 - L2 LINE L2 -85 3187 3138 181 384 129 23 chr4_random 1031004 1031755 -17820058 - L2 LINE L2 -498 2816 1986 27 49 0 0 chr4_random 1032630 1032671 -17819142 + AT_rich Low_complexity Low_complexity 1 41 0 231 254 0 16 chr4_random 1033250 1033313 -17818500 + (TA)n Simple_repeat Simple_repeat 2 63 0 296 301 20 96 chr4_random 1033636 1033782 -17818031 - MER5A DNA MER1_type -28 161 27 1232 197 42 72 chr4_random 1033819 1034180 -17817633 + MLT1A1 LTR MaLR 16 365 0 999 258 121 8 chr4_random 1034689 1035045 -17816768 + MSTD LTR MaLR 1 396 0 25 31 0 0 chr4_random 1035456 1035488 -17816325 + AT_rich Low_complexity Low_complexity 1 32 0 596 119 44 0 chr4_random 1035757 1035916 -17815897 + (TA)n Simple_repeat Simple_repeat 2 167 0 253 287 213 0 chr4_random 1036146 1036282 -17815531 - MIR SINE MIR 0 262 98 343 244 123 68 chr4_random 1036289 1036776 -17815037 - MER69 DNA AcHobo -3 2523 2010 1116 266 92 24 chr4_random 1036818 1037232 -17814581 - MER69 DNA AcHobo -2084 442 1 312 232 12 24 chr4_random 1037673 1037755 -17814058 + MER5A DNA MER1_type 9 89 -100 2191 182 31 14 chr4_random 1037782 1038199 -17813614 + MSTB LTR MaLR 1 424 -2 7785 194 72 10 chr4_random 1038207 1039387 -17812426 + MSTB-int LTR MaLR 5 1304 -347 2557 121 3 0 chr4_random 1039387 1039750 -17812063 - THE1B LTR MaLR 0 364 1 7785 194 72 10 chr4_random 1039750 1040121 -17811692 + MSTB-int LTR MaLR 1304 1651 0 2131 188 49 7 chr4_random 1040121 1040530 -17811283 + MSTB LTR MaLR 1 426 0 1114 213 4 0 chr4_random 1040644 1040869 -17810944 - AluJo SINE Alu -1 311 86 249 152 45 15 chr4_random 1041098 1041164 -17810649 + (TA)n Simple_repeat Simple_repeat 2 69 0 260 309 151 15 chr4_random 1041228 1041493 -17810320 - L1ME LINE L1 -244 5877 5577 188 372 31 31 chr4_random 1041912 1042103 -17809710 + L2 LINE L2 1764 1954 -1360 406 363 77 16 chr4_random 1042654 1042836 -17808977 - MLT1I LTR MaLR -70 339 147 454 294 24 18 chr4_random 1043242 1043412 -17808401 - MIR SINE MIR -4 258 88 4921 188 25 26 chr4_random 1043519 1045242 -17806571 - L1PA16 LINE L1 -9 6157 4445 * 5246 237 15 14 chr4_random 1045226 1046670 -17805143 + L1PA16 LINE L1 3019 4463 -1683 21 0 0 0 chr4_random 1046766 1046787 -17805026 + AT_rich Low_complexity Low_complexity 1 21 0 303 291 107 0 chr4_random 1047690 1047793 -17804020 + MIR SINE MIR 68 181 -81 313 283 43 36 chr4_random 1048048 1048186 -17803627 - MLT1K LTR MaLR -128 460 322 229 292 15 0 chr4_random 1048232 1048297 -17803516 + (TATG)n Simple_repeat Simple_repeat 2 67 0 218 31 0 31 chr4_random 1048312 1048344 -17803469 + (TG)n Simple_repeat Simple_repeat 1 31 0 1989 125 34 0 chr4_random 1048613 1048910 -17802903 + AluSg SINE Alu 1 307 -3 496 332 85 12 chr4_random 1049711 1049970 -17801843 - L2 LINE L2 -340 2974 2697 1335 112 5 47 chr4_random 1049975 1050189 -17801624 + AluSg/x SINE Alu 91 295 -17 304 352 136 37 chr4_random 1050227 1050824 -17800989 - L2 LINE L2 -702 2612 1957 227 349 119 27 chr4_random 1050829 1051090 -17800723 - L2 LINE L2 -1482 1832 1548 2171 103 3 0 chr4_random 1051269 1051570 -17800243 + AluSg SINE Alu 1 302 -8 32 57 0 0 chr4_random 1051602 1051655 -17800158 + AT_rich Low_complexity Low_complexity 1 53 0 582 329 64 78 chr4_random 1052896 1053395 -17798418 + L2 LINE L2 2804 3295 -18 204 40 0 0 chr4_random 1053975 1054000 -17797813 + (TGG)n Simple_repeat Simple_repeat 2 26 0 234 0 0 0 chr4_random 1054000 1054026 -17797787 + (TG)n Simple_repeat Simple_repeat 2 27 0 851 218 27 74 chr4_random 1054632 1055017 -17796796 + MER67D LTR ERV1 24 434 -32 781 153 28 17 chr4_random 1055132 1055574 -17796239 + GA-rich Low_complexity Low_complexity 1 446 0 272 208 0 14 chr4_random 1055590 1055662 -17796151 + A-rich Low_complexity Low_complexity 4 74 0 183 80 0 0 chr4_random 1055917 1055942 -17795871 + (GGAA)n Simple_repeat Simple_repeat 4 28 0 758 84 15 15 chr4_random 1056020 1056151 -17795662 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 25 0 0 0 chr4_random 1057288 1057313 -17794500 + AT_rich Low_complexity Low_complexity 1 25 0 1986 138 0 0 chr4_random 1059294 1059570 -17792243 + AluSx SINE Alu 1 276 -36 227 338 115 29 chr4_random 1061089 1061228 -17790585 + MIR SINE MIR 46 196 -66 21 0 0 0 chr4_random 1061320 1061341 -17790472 + AT_rich Low_complexity Low_complexity 1 21 0 368 200 11 0 chr4_random 1061965 1062060 -17789753 + (TA)n Simple_repeat Simple_repeat 2 97 0 230 140 0 40 chr4_random 1062296 1062346 -17789467 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1428 249 44 42 chr4_random 1064765 1065268 -17786545 - MLT1D LTR MaLR 0 505 2 21 71 0 0 chr4_random 1066344 1066386 -17785427 + AT_rich Low_complexity Low_complexity 1 42 0 2239 92 7 0 chr4_random 1067266 1067572 -17784241 - AluY SINE Alu -3 308 1 437 333 68 14 chr4_random 1067714 1067933 -17783880 + MIR SINE MIR 2 232 -30 284 250 351 36 chr4_random 1068013 1068321 -17783492 - L2 LINE L2 -863 2451 2047 182 313 134 0 chr4_random 1068439 1068506 -17783307 + L2 LINE L2 3180 3255 -17 551 298 11 32 chr4_random 1069249 1069437 -17782376 + MIR SINE MIR 77 260 -2 479 304 46 83 chr4_random 1071616 1071892 -17779921 + MIR SINE MIR 5 262 0 30 0 0 0 chr4_random 1074787 1074817 -17776996 + AT_rich Low_complexity Low_complexity 1 30 0 304 349 70 0 chr4_random 1074881 1075053 -17776760 - MIR SINE MIR -13 249 66 445 31 16 16 chr4_random 1075745 1075809 -17776004 + (CA)n Simple_repeat Simple_repeat 2 65 0 306 360 100 7 chr4_random 1077681 1077899 -17773914 + L2 LINE L2 2757 2989 -324 240 331 92 7 chr4_random 1078174 1078316 -17773497 - MIR SINE MIR -50 212 59 279 0 0 0 chr4_random 1078941 1078972 -17772841 + (CA)n Simple_repeat Simple_repeat 1 31 0 270 355 21 0 chr4_random 1079846 1079939 -17771874 + MIR3 SINE MIR 105 199 -9 21 0 0 0 chr4_random 1082071 1082092 -17769721 + AT_rich Low_complexity Low_complexity 1 21 0 208 179 26 0 chr4_random 1082317 1082356 -17769457 + CT-rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr4_random 1082375 1082406 -17769407 + AT_rich Low_complexity Low_complexity 1 31 0 192 77 0 0 chr4_random 1082959 1082985 -17768828 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr4_random 1083337 1083359 -17768454 + AT_rich Low_complexity Low_complexity 1 22 0 202 222 16 32 chr4_random 1083538 1083601 -17768212 + MIR SINE MIR 100 161 -101 23 0 0 0 chr4_random 1083693 1083716 -17768097 + AT_rich Low_complexity Low_complexity 1 23 0 305 291 0 12 chr4_random 1083821 1083907 -17767906 + MLT1E1 LTR MaLR 56 140 -514 947 149 12 7 chr4_random 1083933 1084121 -17767692 + L1MB1 LINE L1 5986 6167 -1 356 270 83 117 chr4_random 1086056 1086441 -17765372 - MLT1E-int LTR MaLR -34 1337 966 2288 97 0 22 chr4_random 1086495 1086806 -17765007 + AluY SINE Alu 1 304 -7 821 254 99 78 chr4_random 1087177 1087701 -17764112 - MLT1E-int LTR MaLR -711 660 126 928 314 15 0 chr4_random 1087709 1087970 -17763843 - MLT1E LTR MaLR 0 593 329 430 329 38 46 chr4_random 1087983 1088223 -17763590 + L2 LINE L2 2996 3233 -80 1812 140 104 26 chr4_random 1088277 1088663 -17763150 + MSTA LTR MaLR 1 416 -12 2012 227 73 0 chr4_random 1088732 1089172 -17762641 - MER70A LTR ERVL 0 472 1 22 70 0 0 chr4_random 1091051 1091094 -17760719 + AT_rich Low_complexity Low_complexity 1 43 0 724 304 46 13 chr4_random 1091261 1091498 -17760315 - MIR SINE MIR 0 262 18 190 349 0 0 chr4_random 1091517 1091583 -17760230 - MIR SINE MIR -122 140 75 287 273 16 70 chr4_random 1092159 1092287 -17759526 - Charlie8 DNA MER1_type -2142 275 155 302 284 9 18 chr4_random 1096254 1096363 -17755450 + (TATATG)n Simple_repeat Simple_repeat 5 112 0 228 209 75 30 chr4_random 1097160 1097227 -17754586 + MIR SINE MIR 112 181 -81 2075 225 70 6 chr4_random 1097258 1097733 -17754080 + MLT1D LTR MaLR 1 505 0 28 79 0 0 chr4_random 1097761 1097824 -17753989 + AT_rich Low_complexity Low_complexity 1 63 0 239 27 0 54 chr4_random 1098354 1098391 -17753422 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr4_random 1100836 1100859 -17750954 + AT_rich Low_complexity Low_complexity 1 23 0 2944 144 41 2 chr4_random 1102488 1102981 -17748832 + MER75 DNA T2_type 2 513 -1 23 0 0 0 chr4_random 1103940 1103963 -17747850 + AT_rich Low_complexity Low_complexity 1 23 0 2226 211 22 17 chr4_random 1104029 1104569 -17747244 - MER67A LTR ERV1 0 543 1 728 82 15 74 chr4_random 1104629 1104764 -17747049 + MLT2C2 LTR ERVL 5 131 -333 2119 191 2 44 chr4_random 1104770 1105220 -17746593 - Tigger2a DNA MER2_type 0 434 4 309 109 0 0 chr4_random 1105220 1105266 -17746547 + (TG)n Simple_repeat Simple_repeat 2 47 0 24 0 0 0 chr4_random 1106725 1106749 -17745064 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr4_random 1107132 1107165 -17744648 + AT_rich Low_complexity Low_complexity 1 33 0 1127 182 141 25 chr4_random 1107166 1107408 -17744405 - AluJb SINE Alu -27 285 16 2587 180 35 35 chr4_random 1107433 1107945 -17743868 - MLT2B2 LTR ERVL -2 513 2 1617 240 108 59 chr4_random 1107945 1108628 -17743185 - L1MC4 LINE L1 -7 8035 7319 1876 105 8 8 chr4_random 1108629 1108934 -17742879 - AluSc SINE Alu 0 317 13 2118 168 10 37 chr4_random 1108934 1109339 -17742474 - MSTC LTR MaLR -34 394 1 2629 234 69 83 chr4_random 1109339 1109896 -17741917 - L1MC4 LINE L1 -562 7326 6762 2032 78 4 0 chr4_random 1109896 1110152 -17741661 - AluSc SINE Alu -52 257 1 2629 234 69 83 chr4_random 1110152 1110921 -17740892 - L1MC4 LINE L1 -1126 6762 5979 261 0 0 0 chr4_random 1112546 1112575 -17739238 + (TC)n Simple_repeat Simple_repeat 2 30 0 433 83 0 28 chr4_random 1112599 1112671 -17739142 + (TA)n Simple_repeat Simple_repeat 2 71 0 22 35 0 0 chr4_random 1112672 1112701 -17739112 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr4_random 1113251 1113273 -17738540 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 423 0 0 0 chr4_random 1113272 1113319 -17738494 + (TA)n Simple_repeat Simple_repeat 2 48 0 21 36 0 0 chr4_random 1113618 1113646 -17738167 + AT_rich Low_complexity Low_complexity 1 28 0 269 100 20 0 chr4_random 1114359 1114409 -17737404 + (TC)n Simple_repeat Simple_repeat 2 52 0 237 348 54 0 chr4_random 1114581 1114673 -17737140 + MIR SINE MIR 123 219 -43 21 36 0 0 chr4_random 1116464 1116492 -17735321 + AT_rich Low_complexity Low_complexity 1 28 0 1710 160 3 3 chr4_random 1116813 1117115 -17734698 - AluSx SINE Alu 0 302 1 457 313 56 45 chr4_random 1118732 1118930 -17732883 + MIR SINE MIR 9 208 -54 729 338 116 57 chr4_random 1119426 1120541 -17731272 + L2 LINE L2 990 2169 -1145 1370 177 52 18 chr4_random 1120549 1120843 -17730970 - MER61B LTR ERV1 -10 396 27 576 136 29 0 chr4_random 1120830 1120933 -17730880 - MER61B LTR ERV1 -319 106 1 * 183 376 56 34 chr4_random 1121073 1121339 -17730474 + L2 LINE L2 2439 2710 -604 651 256 110 31 chr4_random 1121542 1121881 -17729932 + L1M1 LINE L1 5285 5657 -579 247 240 27 0 chr4_random 1121872 1121947 -17729866 + L1ME LINE L1 5675 5751 -419 * 1211 202 39 10 chr4_random 1122245 1122557 -17729256 - L1 LINE L1 -1592 5616 5296 2668 203 31 18 chr4_random 1122567 1123221 -17728592 - L1 LINE L1 -2171 5037 4376 2022 194 146 11 chr4_random 1123223 1123821 -17727992 - L1 LINE L1 -4597 2612 1908 1150 270 104 17 chr4_random 1123824 1124107 -17727706 - L1M2 LINE L1 -5093 2116 1801 180 0 0 0 chr4_random 1124107 1124127 -17727686 + (TTG)n Simple_repeat Simple_repeat 1 20 0 1150 270 104 17 chr4_random 1124127 1124316 -17727497 - L1M2 LINE L1 -5408 1801 1630 * 1683 273 63 49 chr4_random 1124311 1124944 -17726869 - L1M2 LINE L1 -6567 642 1 21 0 0 0 chr4_random 1125380 1125401 -17726412 + AT_rich Low_complexity Low_complexity 1 21 0 1156 137 57 0 chr4_random 1125874 1126086 -17725727 - L1MA3 LINE L1 0 6305 6082 385 295 212 0 chr4_random 1126719 1126912 -17724901 - MIR SINE MIR -17 245 12 191 125 50 75 chr4_random 1127574 1127614 -17724199 + MER5A DNA MER1_type 151 189 0 351 96 0 0 chr4_random 1128058 1128110 -17723703 + (TCCC)n Simple_repeat Simple_repeat 4 55 0 187 367 61 34 chr4_random 1130316 1130463 -17721350 + MIR SINE MIR 81 231 -31 517 139 29 7 chr4_random 1131154 1131247 -17720566 + (TA)n Simple_repeat Simple_repeat 2 100 -41 2319 62 0 10 chr4_random 1131247 1131536 -17720277 - AluSc SINE Alu -23 286 1 517 139 29 7 chr4_random 1131536 1131579 -17720234 + (TA)n Simple_repeat Simple_repeat 100 141 0 294 145 16 54 chr4_random 1131644 1131830 -17719983 + (TA)n Simple_repeat Simple_repeat 1 179 0 280 339 6 36 chr4_random 1132851 1133019 -17718794 + MLT1J LTR MaLR 1 163 -348 265 190 52 0 chr4_random 1133231 1133289 -17718524 + MLT1F LTR MaLR 464 524 -18 255 254 0 0 chr4_random 1133330 1133393 -17718420 + MLT1J LTR MaLR 449 511 0 990 211 48 0 chr4_random 1134345 1134553 -17717260 + L1MC4 LINE L1 7450 7667 -375 744 73 128 0 chr4_random 1134570 1134679 -17717134 - AluSg/x SINE Alu -14 296 174 1673 167 38 20 chr4_random 1134714 1135055 -17716758 - MER7A DNA MER2_type -1 345 1 180 0 0 0 chr4_random 1135292 1135312 -17716501 + (TG)n Simple_repeat Simple_repeat 1 20 0 223 264 0 0 chr4_random 1135316 1135369 -17716444 + (CATATA)n Simple_repeat Simple_repeat 1 53 0 2019 92 0 10 chr4_random 1135443 1135736 -17716077 - AluY SINE Alu -21 290 1 225 156 62 62 chr4_random 1135743 1135807 -17716006 - L1ME3 LINE L1 0 6162 6099 713 203 8 0 chr4_random 1135874 1136007 -17715806 + AluJ SINE Alu 1 134 -178 904 204 6 0 chr4_random 1136048 1136220 -17715593 + AluJ SINE Alu 129 301 -11 1351 264 92 44 chr4_random 1136222 1137131 -17714682 - L1ME3 LINE L1 -96 6066 5115 253 231 33 11 chr4_random 1137214 1137305 -17714508 + (TA)n Simple_repeat Simple_repeat 1 93 0 643 71 0 0 chr4_random 1138395 1138479 -17713334 - L1PA7 LINE L1 -6 6148 6065 1031 200 162 43 chr4_random 1138739 1139084 -17712729 + MLT1B LTR MaLR 5 390 0 21 21 0 64 chr4_random 1139942 1139989 -17711824 + AT_rich Low_complexity Low_complexity 1 44 0 2430 73 0 13 chr4_random 1143131 1143446 -17708367 + AluY SINE Alu 1 311 0 309 89 0 0 chr4_random 1144706 1144751 -17707062 + (TG)n Simple_repeat Simple_repeat 2 46 0 2436 53 0 13 chr4_random 1145609 1145913 -17705900 - AluY SINE Alu -10 301 2 306 283 24 117 chr4_random 1146247 1146537 -17705276 - L1MC4 LINE L1 0 8042 7780 999 102 0 0 chr4_random 1146540 1146668 -17705145 + AluSg SINE Alu 4 131 -179 27 0 0 0 chr4_random 1148755 1148782 -17703031 + AT_rich Low_complexity Low_complexity 1 27 0 1236 117 0 28 chr4_random 1149230 1149410 -17702403 + AluSg SINE Alu 121 295 -17 2693 226 43 71 chr4_random 1149427 1149974 -17701839 - L1MC4 LINE L1 -273 7769 7261 1690 136 0 12 chr4_random 1149974 1150225 -17701588 + AluSq SINE Alu 49 296 -17 2693 226 43 71 chr4_random 1150225 1150692 -17701121 - L1MC4 LINE L1 -781 7261 6783 1169 234 130 24 chr4_random 1150692 1151030 -17700783 - MLT1F LTR MaLR 0 542 169 343 264 30 23 chr4_random 1151196 1151361 -17700452 - LTR43 LTR ERV1 -207 472 155 458 311 61 6 chr4_random 1151534 1151698 -17700115 - MLT1F LTR MaLR -369 173 1 348 284 29 20 chr4_random 1151704 1151806 -17700007 - L1MC4 LINE L1 -1259 6783 6681 440 47 0 16 chr4_random 1151812 1151876 -17699937 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2033 182 14 5 chr4_random 1151881 1152249 -17699564 - MER65A LTR ERV1 0 445 75 25446 70 5 4 chr4_random 1152254 1156451 -17695362 - L1PA6 LINE L1 -13 6141 1938 200 216 0 0 chr4_random 1156496 1156533 -17695280 + (TATG)n Simple_repeat Simple_repeat 3 39 0 284 265 85 42 chr4_random 1156634 1156823 -17694990 - L1MC4a LINE L1 -1426 6382 6186 606 258 56 20 chr4_random 1156928 1157126 -17694687 + MLT1F LTR MaLR 338 542 0 819 233 58 51 chr4_random 1157133 1157408 -17694405 + L1MC4 LINE L1 6790 7066 -976 1066 168 0 11 chr4_random 1157417 1157608 -17694205 + MER47A DNA MER2_type 1 189 -177 1006 191 10 0 chr4_random 1157627 1157826 -17693987 + MER47A DNA MER2_type 163 363 -3 548 305 61 15 chr4_random 1157845 1158239 -17693574 + L1MC4 LINE L1 7070 7481 -561 456 258 60 57 chr4_random 1158245 1158578 -17693235 - L1MC4a LINE L1 -1834 5974 5641 231 422 50 6 chr4_random 1158629 1158790 -17693023 - L2 LINE L2 -4 3268 3101 22 0 0 0 chr4_random 1158817 1158839 -17692974 + AT_rich Low_complexity Low_complexity 1 22 0 223 400 60 30 chr4_random 1158961 1159391 -17692422 - L2 LINE L2 -574 2740 2298 3309 326 116 26 chr4_random 1160018 1160120 -17691693 - L2 LINE L2 -1159 2155 2064 243 0 0 0 chr4_random 1160120 1160147 -17691666 + (TG)n Simple_repeat Simple_repeat 2 28 0 3309 326 116 26 chr4_random 1160147 1161991 -17689822 - L2 LINE L2 -1250 2064 34 22 35 0 0 chr4_random 1162211 1162240 -17689573 + AT_rich Low_complexity Low_complexity 1 29 0 416 293 14 36 chr4_random 1162433 1162573 -17689240 - MIR SINE MIR -70 192 56 476 219 4 201 chr4_random 1163265 1163534 -17688279 + MIR SINE MIR 47 262 0 21 0 0 0 chr4_random 1163598 1163619 -17688194 + AT_rich Low_complexity Low_complexity 1 21 0 189 94 0 0 chr4_random 1164895 1164927 -17686886 + (T)n Simple_repeat Simple_repeat 1 32 0 640 236 159 22 chr4_random 1365234 1365416 -17486397 + MER58A DNA MER1_type 6 212 -12 31 0 0 0 chr4_random 1365447 1365478 -17486335 + AT_rich Low_complexity Low_complexity 1 31 0 404 226 143 20 chr4_random 1365520 1365693 -17486120 + MLT1B LTR MaLR 23 194 -180 905 235 20 0 chr4_random 1365723 1365919 -17485894 + MLT1B LTR MaLR 189 388 -2 240 269 0 19 chr4_random 1366008 1366060 -17485753 - L2 LINE L2 -89 3183 3133 933 216 215 33 chr4_random 1366189 1366684 -17485129 + LTR28 LTR ERV1 1 1305 -141 613 220 14 28 chr4_random 1367016 1367157 -17484656 + MER106A DNA MER1_type 1 139 -97 199 286 100 0 chr4_random 1367489 1367559 -17484254 + MIR SINE MIR 75 151 -111 759 236 84 9 chr4_random 1367603 1367828 -17483985 - L1ME1 LINE L1 -5 6161 5920 2124 111 3 13 chr4_random 1367829 1368136 -17483677 + AluSc SINE Alu 1 304 -5 1342 169 22 0 chr4_random 1368372 1368597 -17483216 + AluSg/x SINE Alu 80 309 -1 605 337 102 0 chr4_random 1368662 1368956 -17482857 - L2 LINE L2 -454 2860 2537 403 215 0 25 chr4_random 1369154 1369233 -17482580 + Tigger5 DNA MER2_type 3 79 -2244 366 208 0 0 chr4_random 1369236 1369308 -17482505 - Tigger5 DNA MER2_type -7 2316 2245 238 250 31 0 chr4_random 1369301 1369365 -17482448 + Tigger5 DNA MER2_type 2242 2307 -16 * 494 191 9 19 chr4_random 1369365 1369470 -17482343 + L1MC1 LINE L1 6219 6322 -11 301 224 132 46 chr4_random 1369914 1370088 -17481725 - MER53 DNA DNA 0 189 1 2014 114 10 3 chr4_random 1370287 1370577 -17481236 + AluSc SINE Alu 1 292 -17 2013 71 21 14 chr4_random 1372615 1372915 -17478898 - AluY SINE Alu 0 302 1 1543 217 25 33 chr4_random 1373200 1373568 -17478245 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr4_random 1373774 1373795 -17478018 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr4_random 1374930 1374982 -17476831 + AT_rich Low_complexity Low_complexity 1 52 0 243 125 0 0 chr4_random 1375046 1375086 -17476727 + (TG)n Simple_repeat Simple_repeat 2 41 0 26 64 0 0 chr4_random 1375462 1375509 -17476304 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr4_random 1375621 1375654 -17476159 + AT_rich Low_complexity Low_complexity 1 33 0 1290 104 6 6 chr4_random 1376435 1376617 -17475196 + AluSp SINE Alu 122 303 -10 251 231 0 0 chr4_random 1376667 1376719 -17475094 + L2 LINE L2 3262 3313 0 266 222 19 0 chr4_random 1377385 1377439 -17474374 + L2 LINE L2 3257 3311 -2 22 0 0 0 chr4_random 1377531 1377553 -17474260 + AT_rich Low_complexity Low_complexity 1 22 0 234 332 60 47 chr4_random 1377607 1377908 -17473905 + L2 LINE L2 1991 2295 -1019 495 201 45 17 chr4_random 1379314 1379449 -17472364 + MER61E LTR ERV1 1 798 -480 228 219 141 0 chr4_random 1379566 1379630 -17472183 + MER51A LTR ERV1 208 280 -354 * 668 174 74 149 chr4_random 1379601 1380006 -17471807 + LTR25 LTR ERV1 415 1232 -40 21 57 0 0 chr4_random 1380465 1380500 -17471313 + AT_rich Low_complexity Low_complexity 1 35 0 306 123 0 0 chr4_random 1382025 1382082 -17469731 + (GA)n Simple_repeat Simple_repeat 2 58 0 241 335 208 42 chr4_random 1382562 1382923 -17468890 + L2 LINE L2 1833 2253 -1061 517 289 0 42 chr4_random 1383037 1383203 -17468610 + MIR SINE MIR 28 186 -76 1542 189 63 0 chr4_random 1383223 1383388 -17468425 - AluJo SINE Alu -8 304 112 288 0 0 0 chr4_random 1383388 1383420 -17468393 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1542 189 63 0 chr4_random 1383420 1383540 -17468273 - AluJo SINE Alu -200 112 1 1771 160 7 0 chr4_random 1384572 1384878 -17466935 - AluSx SINE Alu 0 308 1 21 36 0 0 chr4_random 1385260 1385288 -17466525 + AT_rich Low_complexity Low_complexity 1 28 0 203 378 0 14 chr4_random 1386031 1386105 -17465708 + L2 LINE L2 3134 3206 -66 21 36 0 0 chr4_random 1386363 1386391 -17465422 + AT_rich Low_complexity Low_complexity 1 28 0 248 196 18 0 chr4_random 1387328 1387384 -17464429 + (TA)n Simple_repeat Simple_repeat 2 58 0 292 109 73 0 chr4_random 1387842 1387897 -17463916 + L1PA16 LINE L1 6108 6166 0 1228 62 0 0 chr4_random 1388049 1388193 -17463620 - AluY SINE Alu -167 144 1 288 0 0 0 chr4_random 1389281 1389313 -17462500 + (TG)n Simple_repeat Simple_repeat 2 33 0 230 286 36 12 chr4_random 1389320 1389404 -17462409 + MER103 DNA DNA 32 117 -49 511 266 45 26 chr4_random 1390072 1390226 -17461587 + MIR SINE MIR 51 207 -55 867 204 111 121 chr4_random 1390228 1390698 -17461115 + MER4C LTR ERV1 1 465 0 185 339 202 0 chr4_random 1390754 1390863 -17460950 + L2 LINE L2 2654 2784 -530 186 298 0 18 chr4_random 1391054 1391111 -17460702 + L2 LINE L2 3258 3313 0 7626 21 0 0 chr4_random 1391405 1392848 -17458965 - L1PA3 LINE L1 0 6155 4715 4791 184 48 17 chr4_random 1392948 1393955 -17457858 + L1MC3 LINE L1 6677 7699 -86 2181 166 10 10 chr4_random 1393961 1394352 -17457461 - MER61C LTR ERV1 -3 431 41 2645 80 11 3 chr4_random 1395307 1395659 -17456154 + THE1A LTR MaLR 1 355 0 479 176 23 76 chr4_random 1395709 1395840 -17455973 + MLT1E2 LTR MaLR 51 174 -452 988 236 80 90 chr4_random 1395953 1396376 -17455437 + MLT1E2 LTR MaLR 206 624 -2 297 308 0 17 chr4_random 1396466 1396583 -17455230 + GA-rich Low_complexity Low_complexity 2 116 0 1934 128 26 13 chr4_random 1399823 1400127 -17451686 - AluSx SINE Alu -4 308 1 22 0 0 0 chr4_random 1400446 1400468 -17451345 + AT_rich Low_complexity Low_complexity 1 22 0 213 108 0 0 chr4_random 1401606 1401643 -17450170 + (CA)n Simple_repeat Simple_repeat 2 38 0 1816 214 127 2 chr4_random 1401900 1402349 -17449464 + MLT1D LTR MaLR 1 505 0 583 282 103 88 chr4_random 1403024 1403348 -17448465 + HAL1b LINE L1 55 372 -976 2270 97 7 0 chr4_random 1403348 1403656 -17448157 - AluSx SINE Alu 0 312 3 583 282 103 88 chr4_random 1403656 1403970 -17447843 + HAL1b LINE L1 372 703 -645 23 0 0 0 chr4_random 1404061 1404084 -17447729 + AT_rich Low_complexity Low_complexity 1 23 0 1322 266 91 61 chr4_random 1404112 1405068 -17446745 + L1MC5 LINE L1 6430 7417 -544 288 285 117 7 chr4_random 1405201 1405338 -17446475 - MIR SINE MIR -25 237 86 25 0 0 0 chr4_random 1405518 1405543 -17446270 + AT_rich Low_complexity Low_complexity 1 25 0 186 136 45 0 chr4_random 1405725 1405769 -17446044 - L2 LINE L2 -303 2969 2924 1082 231 101 57 chr4_random 1406172 1406610 -17445203 - MLT1C LTR MaLR -2 465 9 255 306 69 65 chr4_random 1406689 1406905 -17444908 - L2 LINE L2 -797 2517 2301 723 248 50 30 chr4_random 1408154 1408356 -17443457 + MIR SINE MIR 15 220 -42 202 292 0 0 chr4_random 1408668 1408716 -17443097 + (CA)n Simple_repeat Simple_repeat 2 49 0 210 267 12 12 chr4_random 1409164 1409250 -17442563 + (TA)n Simple_repeat Simple_repeat 1 86 0 239 340 50 10 chr4_random 1410497 1410597 -17441216 + MIR SINE MIR 23 126 -136 339 322 105 75 chr4_random 1411162 1411795 -17440018 - L2 LINE L2 0 3313 2638 457 30 0 30 chr4_random 1411818 1411885 -17439928 + AluY SINE Alu 238 302 -10 183 287 250 37 chr4_random 1412219 1412355 -17439458 - MIR SINE MIR -11 251 87 1217 52 0 13 chr4_random 1412389 1412543 -17439270 + AluY SINE Alu 1 152 -159 945 213 4 52 chr4_random 1413050 1413280 -17438533 - MER20 DNA MER1_type 0 219 1 375 141 0 0 chr4_random 1413486 1413550 -17438263 + (GGA)n Simple_repeat Simple_repeat 3 66 0 1616 169 20 17 chr4_random 1413595 1413890 -17437923 + AluJb SINE Alu 1 296 -16 7863 182 21 30 chr4_random 1414466 1417132 -17434681 - L1MA4A LINE L1 -5 7000 4264 6499 240 44 2 chr4_random 1417145 1418519 -17433294 - L1MA4A LINE L1 -5232 1617 187 39 38 0 0 chr4_random 1418628 1418681 -17433132 + AT_rich Low_complexity Low_complexity 1 53 0 23 0 0 0 chr4_random 1420022 1420045 -17431768 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr4_random 1420134 1420163 -17431650 + AT_rich Low_complexity Low_complexity 1 29 0 1981 104 68 0 chr4_random 1420163 1420442 -17431371 - AluSx SINE Alu -14 298 1 3540 180 45 14 chr4_random 1421004 1421714 -17430099 + MER50 LTR ERV1 3 734 0 290 346 65 7 chr4_random 1421895 1422048 -17429765 + L2 LINE L2 3152 3313 0 280 260 40 20 chr4_random 1423653 1423803 -17428010 + (TATATG)n Simple_repeat Simple_repeat 6 158 0 1064 227 72 42 chr4_random 1424165 1424453 -17427360 - MLT1A2 LTR MaLR -29 345 44 2190 169 53 22 chr4_random 1424453 1424868 -17426945 - MSTA LTR MaLR 0 428 1 1064 227 72 42 chr4_random 1424868 1424914 -17426899 - MLT1A2 LTR MaLR -330 44 1 2219 120 117 25 chr4_random 1425368 1425760 -17426053 + MSTA LTR MaLR 1 428 0 375 61 0 0 chr4_random 1428234 1428283 -17423530 - L1PA6 LINE L1 -5 6149 6101 897 257 31 34 chr4_random 1429019 1429342 -17422471 + L1ME3A LINE L1 5841 6162 -8 211 234 0 0 chr4_random 1429520 1429567 -17422246 + (TAA)n Simple_repeat Simple_repeat 2 48 0 374 291 67 0 chr4_random 1429579 1429713 -17422100 - MIR SINE MIR -26 236 94 401 255 128 55 chr4_random 1431187 1431508 -17420305 - L1MC4a LINE L1 -326 5795 5559 25 31 0 0 chr4_random 1431916 1431948 -17419865 + AT_rich Low_complexity Low_complexity 1 32 0 1999 100 54 4 chr4_random 1432075 1432354 -17419459 - AluSp SINE Alu -20 293 1 12922 186 34 49 chr4_random 1432507 1433937 -17417876 - L1MA4 LINE L1 -9 7710 6261 1531 104 50 9 chr4_random 1433937 1434158 -17417655 - MER30 DNA MER1_type 0 230 1 12922 186 34 49 chr4_random 1434158 1436044 -17415769 - L1MA4 LINE L1 -1458 6261 4350 643 163 0 74 chr4_random 1436044 1436179 -17415634 - AluSp/q SINE Alu -12 301 177 12922 186 34 49 chr4_random 1436179 1438433 -17413380 - L1MA4 LINE L1 -3369 4350 2097 2507 43 0 7 chr4_random 1438433 1438737 -17413076 - AluY SINE Alu -9 302 1 12922 186 34 49 chr4_random 1438737 1439002 -17412811 - L1MA4 LINE L1 -5622 2097 1830 965 34 0 0 chr4_random 1439027 1439144 -17412669 + L1PA8 LINE L1 5858 5974 -198 3893 141 75 54 chr4_random 1439151 1440562 -17411251 + pTR5 LTR ERV1 758 2603 -3 1145 124 0 0 chr4_random 1440565 1440734 -17411079 + L1PA8 LINE L1 5971 6139 -33 1802 212 52 10 chr4_random 1440834 1441239 -17410574 - L1MA4 LINE L1 -7132 433 12 453 319 36 44 chr4_random 1441350 1441736 -17410077 - L1M4 LINE L1 -1523 4623 4241 25 0 0 0 chr4_random 1441976 1442001 -17409812 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr4_random 1442090 1442111 -17409702 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr4_random 1442989 1443011 -17408802 + AT_rich Low_complexity Low_complexity 1 22 0 1925 186 16 18 chr4_random 1445864 1446251 -17405562 + MLT1B LTR MaLR 3 388 -2 303 281 24 92 chr4_random 1447487 1447651 -17404162 + MIR SINE MIR 84 236 -26 21 57 0 0 chr4_random 1448708 1448743 -17403070 + AT_rich Low_complexity Low_complexity 1 35 0 1756 225 91 0 chr4_random 1448792 1449209 -17402604 + MER74C LTR ERVL 4 458 -2 850 289 79 23 chr4_random 1449579 1449970 -17401843 + MLT1J2 LTR MaLR 17 429 -21 4486 190 75 3 chr4_random 1450886 1451821 -17399992 - L1MC2 LINE L1 -12 6332 5331 983 100 0 2 chr4_random 1451828 1452007 -17399806 - AluSg/x SINE Alu -11 301 90 1923 236 44 30 chr4_random 1452007 1452643 -17399170 - L1MC2 LINE L1 -822 5324 4680 21 57 0 0 chr4_random 1452826 1452861 -17398952 + AT_rich Low_complexity Low_complexity 1 35 0 238 300 17 0 chr4_random 1452978 1453038 -17398775 + L2 LINE L2 3211 3271 -1 1339 275 11 55 chr4_random 1455758 1456234 -17395579 + LTR16B LTR ERVL 8 462 -2 2793 142 46 10 chr4_random 1456297 1456777 -17395036 + LOR1a LTR ERV1 1 497 0 359 293 107 27 chr4_random 1458166 1458351 -17393462 + L1MC/D LINE L1 5373 5581 -2227 363 88 33 154 chr4_random 1458351 1458415 -17393398 + MADE1 DNA Mariner 1 52 -28 2213 97 13 0 chr4_random 1458415 1458713 -17393100 + AluSx SINE Alu 1 302 -10 363 88 33 154 chr4_random 1458713 1458739 -17393074 + MADE1 DNA Mariner 52 80 0 359 293 107 27 chr4_random 1458739 1458778 -17393035 + L1MC/D LINE L1 5581 5615 -2193 1866 145 3 0 chr4_random 1459084 1459374 -17392439 + MER6 DNA MER2_type 315 865 0 23 0 0 0 chr4_random 1459484 1459507 -17392306 + AT_rich Low_complexity Low_complexity 1 23 0 592 205 18 0 chr4_random 1461353 1461465 -17390348 + MER81 DNA DNA 1 114 0 356 276 0 0 chr4_random 1461935 1462022 -17389791 - MIR SINE MIR -14 248 162 513 296 0 30 chr4_random 1462025 1462194 -17389619 - MER63A DNA MER1_type -2 208 45 276 289 31 10 chr4_random 1462226 1462323 -17389490 - MIR SINE MIR -102 160 62 1198 300 116 25 chr4_random 1462886 1463599 -17388214 - L1ME LINE L1 -5207 863 86 761 297 144 35 chr4_random 1463691 1464122 -17387691 - MLT1K LTR MaLR -18 570 93 434 313 75 38 chr4_random 1464485 1464725 -17387088 + HAL1 LINE L1 196 444 -2063 333 286 69 40 chr4_random 1464898 1465372 -17386441 + HAL1 LINE L1 660 1165 -1342 384 22 0 0 chr4_random 1465462 1465507 -17386306 + (CA)n Simple_repeat Simple_repeat 1 45 0 616 290 113 45 chr4_random 1465551 1465906 -17385907 - MLT1J LTR MaLR -132 379 1 351 241 30 68 chr4_random 1465907 1466040 -17385773 + HAL1 LINE L1 1178 1305 -1202 1069 310 84 16 chr4_random 1466050 1466683 -17385130 + HAL1 LINE L1 1357 2032 -475 407 266 57 91 chr4_random 1466689 1466952 -17384861 + HAL1 LINE L1 2192 2445 -62 255 103 0 0 chr4_random 1467141 1467180 -17384633 + (TG)n Simple_repeat Simple_repeat 2 40 0 1733 178 89 3 chr4_random 1467211 1467549 -17384264 - MSTB LTR MaLR -59 367 1 257 167 0 17 chr4_random 1467645 1467705 -17384108 + A-rich Low_complexity Low_complexity 4 62 0 927 258 109 71 chr4_random 1467728 1468279 -17383534 + HAL1 LINE L1 1928 2499 -8 2045 141 10 0 chr4_random 1468601 1468899 -17382914 + AluSx SINE Alu 1 301 -11 1125 217 52 42 chr4_random 1471596 1471978 -17379835 - L1M4 LINE L1 -862 5284 4899 * 3769 224 61 70 chr4_random 1471977 1474499 -17377314 - L1M4 LINE L1 -400 6282 455 288 253 0 13 chr4_random 1474677 1474756 -17377057 + L2 LINE L2 2432 2509 -805 1858 151 45 0 chr4_random 1476523 1476814 -17374999 + AluSx SINE Alu 2 305 -7 1182 218 69 36 chr4_random 1476943 1477305 -17374508 - MLT1A2 LTR MaLR 0 374 1 1846 204 13 15 chr4_random 1477322 1477719 -17374094 - MSTD LTR MaLR 0 396 1 288 277 127 36 chr4_random 1478213 1478379 -17373434 - MIR SINE MIR 0 262 82 624 324 49 4 chr4_random 1479962 1480206 -17371607 + MIR SINE MIR 8 262 0 796 290 40 18 chr4_random 1480359 1480583 -17371230 + MIR SINE MIR 34 262 0 26 0 0 0 chr4_random 1480751 1480777 -17371036 + AT_rich Low_complexity Low_complexity 1 26 0 252 59 0 0 chr4_random 1481175 1481209 -17370604 + (CA)n Simple_repeat Simple_repeat 1 34 0 582 248 153 0 chr4_random 1481529 1481686 -17370127 + MER5A DNA MER1_type 1 181 -8 360 373 35 0 chr4_random 1481701 1481783 -17370030 - MER5B DNA MER1_type 0 178 100 1723 181 7 0 chr4_random 1481783 1482086 -17369727 - AluSx SINE Alu -7 305 1 360 373 35 0 chr4_random 1482086 1482172 -17369641 - MER5B DNA MER1_type -78 100 4 2131 111 0 3 chr4_random 1483154 1483452 -17368361 + AluSp SINE Alu 1 297 -16 34 0 0 0 chr4_random 1483546 1483580 -17368233 + AT_rich Low_complexity Low_complexity 1 34 0 23 68 0 0 chr4_random 1483885 1483929 -17367884 + AT_rich Low_complexity Low_complexity 1 44 0 601 221 66 0 chr4_random 1485350 1485472 -17366341 + MLT1G1 LTR MaLR 466 595 0 450 296 83 23 chr4_random 1485608 1485872 -17365941 + MLT1G1-int LTR MaLR 285 564 -807 281 288 44 109 chr4_random 1486802 1487031 -17364782 + MLT1G1-int LTR MaLR 1134 1347 -24 644 288 52 40 chr4_random 1487055 1487401 -17364412 + MLT1G1 LTR MaLR 2 346 -196 456 303 86 0 chr4_random 1487466 1487628 -17364185 + MIR SINE MIR 86 261 -1 24 32 0 0 chr4_random 1487641 1487672 -17364141 + AT_rich Low_complexity Low_complexity 1 31 0 414 332 76 25 chr4_random 1489894 1490132 -17361681 - MIR SINE MIR -10 252 3 1665 209 53 25 chr4_random 1490271 1490702 -17361111 - MER63C DNA MER1_type -235 695 253 1929 155 5 70 chr4_random 1491389 1491803 -17360010 + MLT1B LTR MaLR 4 390 0 21 57 0 0 chr4_random 1491807 1491842 -17359971 + AT_rich Low_complexity Low_complexity 1 35 0 191 286 196 9 chr4_random 1492225 1492337 -17359476 - MIR SINE MIR -48 214 82 1045 214 44 0 chr4_random 1492431 1492679 -17359134 - L1 LINE L1 -3742 2586 2328 4236 261 46 16 chr4_random 1492688 1492844 -17358969 - L1 LINE L1 -4080 1248 1098 1776 85 69 4 chr4_random 1492844 1493091 -17358722 - AluSx SINE Alu -16 296 34 4236 261 46 16 chr4_random 1493091 1493245 -17358568 - L1 LINE L1 -4230 1098 950 195 45 0 68 chr4_random 1493245 1493289 -17358524 + (TA)n Simple_repeat Simple_repeat 1 41 0 4236 261 46 16 chr4_random 1493289 1493554 -17358259 - L1 LINE L1 -4378 950 695 237 65 0 0 chr4_random 1493554 1493585 -17358228 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4236 261 46 16 chr4_random 1493585 1494885 -17356928 - L1 LINE L1 -4633 695 300 28 48 0 0 chr4_random 1494926 1494968 -17356845 + AT_rich Low_complexity Low_complexity 1 42 0 1313 221 87 56 chr4_random 1495162 1495611 -17356202 - MLT1C LTR MaLR -2 465 3 381 266 22 43 chr4_random 1497984 1498168 -17353645 - MER104 DNA MER2_type 0 180 1 412 279 54 54 chr4_random 1498168 1498372 -17353441 - MIR SINE MIR -2 260 57 864 211 0 6 chr4_random 1499379 1499550 -17352263 + FAM SINE Alu 1 170 -5 25 31 0 0 chr4_random 1500690 1500722 -17351091 + AT_rich Low_complexity Low_complexity 1 32 0 203 192 19 0 chr4_random 1500960 1501012 -17350801 + (TAGA)n Simple_repeat Simple_repeat 3 55 0 278 80 20 0 chr4_random 1501159 1501209 -17350604 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 181 392 62 0 chr4_random 1501331 1501428 -17350385 + L2 LINE L2 3153 3255 -17 2300 99 0 0 chr4_random 1501698 1502002 -17349811 - AluSq SINE Alu -9 304 1 21 0 0 0 chr4_random 1502060 1502081 -17349732 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr4_random 1502160 1502180 -17349633 + (GGAA)n Simple_repeat Simple_repeat 3 22 0 972 126 17 0 chr4_random 1502182 1502356 -17349457 + GA-rich Low_complexity Low_complexity 1 177 0 22 0 0 0 chr4_random 1503421 1503443 -17348370 + AT_rich Low_complexity Low_complexity 1 22 0 292 305 127 17 chr4_random 1504376 1504494 -17347319 + L2 LINE L2 3183 3313 0 651 113 0 26 chr4_random 1504913 1505028 -17346785 + LTR10D LTR ERV1 1 112 -401 3663 104 34 2 chr4_random 1505916 1506454 -17345359 - L1PA10 LINE L1 -2 6166 5612 895 221 111 0 chr4_random 1506524 1506705 -17345108 + Tigger3(Golem) DNA MER2_type 1 201 -2828 * 3302 156 27 34 chr4_random 1506701 1507369 -17344444 + Tigger3(Golem) DNA MER2_type 2366 3028 -1 1665 192 73 9 chr4_random 1509319 1509662 -17342151 - MLT1A1 LTR MaLR 0 365 1 470 304 39 11 chr4_random 1510699 1510959 -17340854 + Tigger8 DNA MER2_type 256 522 -144 357 242 93 75 chr4_random 1511004 1511165 -17340648 - L2 LINE L2 -4 3309 3146 1399 227 172 37 chr4_random 1511172 1511608 -17340205 - MLT1D LTR MaLR -5 500 6 1324 281 90 32 chr4_random 1511816 1512284 -17339529 - L2 LINE L2 -426 2888 2382 2368 68 0 3 chr4_random 1512284 1512594 -17339219 + AluY SINE Alu 1 309 -2 1324 281 90 32 chr4_random 1512594 1512680 -17339133 - L2 LINE L2 -932 2382 2302 477 324 105 21 chr4_random 1512681 1512919 -17338894 - L2 LINE L2 -2901 413 156 305 299 31 0 chr4_random 1512996 1513093 -17338720 + MER94 DNA DNA 35 134 0 439 260 64 102 chr4_random 1513587 1513979 -17337834 - L1MEd LINE L1 -5067 1138 762 202 311 104 47 chr4_random 1515978 1516084 -17335729 + MIR SINE MIR 53 164 -98 692 252 13 0 chr4_random 1516754 1516909 -17334904 - MER3 DNA MER1_type -52 157 1 414 127 0 0 chr4_random 1518084 1518155 -17333658 + (TC)n Simple_repeat Simple_repeat 2 72 0 321 308 111 0 chr4_random 1518672 1518810 -17333003 - MER20 DNA MER1_type -4 215 63 1910 141 0 20 chr4_random 1519058 1519363 -17332450 - AluSx SINE Alu -13 299 1 327 358 75 13 chr4_random 1521711 1521937 -17329876 + L2 LINE L2 1360 1599 -1715 24 53 0 0 chr4_random 1521968 1522006 -17329807 + AT_rich Low_complexity Low_complexity 1 38 0 5060 181 32 11 chr4_random 1522011 1523950 -17327863 - L1PB3 LINE L1 -7 6147 4180 912 305 140 59 chr4_random 1523953 1524484 -17327329 + L2 LINE L2 1652 2138 -1176 2085 119 4 0 chr4_random 1524484 1524792 -17327021 - AluSg SINE Alu 0 309 1 912 305 140 59 chr4_random 1524792 1525483 -17326330 + L2 LINE L2 2138 2976 -338 198 333 30 0 chr4_random 1525558 1525624 -17326189 + L2 LINE L2 3002 3069 -244 183 42 0 0 chr4_random 1526392 1526416 -17325397 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 35260 103 14 13 chr4_random 1526499 1532640 -17319173 + L1PA7 LINE L1 11 6154 0 383 296 151 38 chr4_random 1534451 1534610 -17317203 + MER5A DNA MER1_type 13 189 0 4588 158 37 65 chr4_random 1534900 1536002 -17315811 - MER11C LTR ERVK 0 1071 1 968 275 65 55 chr4_random 1536115 1536515 -17315298 - L1MEd LINE L1 -5958 438 35 266 287 43 32 chr4_random 1536589 1536683 -17315130 - L2 LINE L2 -525 2789 2695 352 287 118 36 chr4_random 1536824 1537019 -17314794 - MIR SINE MIR -31 231 21 377 269 32 0 chr4_random 1537237 1537330 -17314483 + L2 LINE L2 2697 2792 -522 1340 166 33 91 chr4_random 1537376 1537683 -17314130 - MLT2B1 LTR ERVL -10 510 222 1728 171 0 0 chr4_random 1537699 1537963 -17313850 + AluSx SINE Alu 11 274 -38 663 217 0 0 chr4_random 1537963 1538120 -17313693 + GA-rich Low_complexity Low_complexity 4 160 0 344 82 20 0 chr4_random 1538120 1538169 -17313644 + (GGAA)n Simple_repeat Simple_repeat 4 53 0 1351 175 30 27 chr4_random 1538169 1538432 -17313381 - MLT2B2 LTR ERVL -251 264 1 333 224 0 0 chr4_random 1538441 1538499 -17313314 + MER94 DNA DNA 1 58 -76 406 284 129 7 chr4_random 1538723 1538878 -17312935 + L2 LINE L2 2805 2978 -335 457 234 0 48 chr4_random 1539615 1539739 -17312074 + Ricksha_b DNA DNA 1 118 -1136 4281 168 31 55 chr4_random 1539752 1540681 -17311132 + Ricksha_b DNA DNA 239 1145 -109 1780 128 0 4 chr4_random 1540691 1540948 -17310865 + MLT2A2 LTR ERVL 1 256 -197 643 95 0 0 chr4_random 1540946 1541041 -17310772 + MLT2A2 LTR ERVL 359 453 0 * 444 204 0 0 chr4_random 1541055 1541148 -17310665 + Ricksha_b DNA DNA 1554 1646 -8 646 251 96 15 chr4_random 1541170 1541504 -17310309 + LTR37A LTR ERV1 53 413 -13 2717 304 91 42 chr4_random 1541512 1542983 -17308830 + L1M2 LINE L1 1 1543 -5306 * 6159 177 32 10 chr4_random 1542974 1543290 -17308523 + L1MA5 LINE L1 4080 4388 -1912 198 0 0 0 chr4_random 1543290 1543312 -17308501 + (TAAAA)n Simple_repeat Simple_repeat 1 22 0 6159 177 32 10 chr4_random 1543312 1545163 -17306650 + L1MA5 LINE L1 4388 6300 0 1385 209 71 35 chr4_random 1545566 1545972 -17305841 - LTR52 LTR ERVL 0 421 1 471 303 0 62 chr4_random 1546213 1546296 -17305517 - MER5B DNA MER1_type -11 167 99 2101 132 0 0 chr4_random 1546296 1546592 -17305221 + AluSq SINE Alu 1 296 -17 471 303 0 62 chr4_random 1546592 1546686 -17305127 - MER5B DNA MER1_type -79 99 1 264 327 55 40 chr4_random 1546841 1547040 -17304773 - L1ME LINE L1 -369 5801 5600 22 35 0 0 chr4_random 1547284 1547313 -17304500 + AT_rich Low_complexity Low_complexity 1 29 0 406 292 12 47 chr4_random 1547379 1547550 -17304263 + MIR SINE MIR 98 262 0 844 9 0 0 chr4_random 1547708 1547813 -17304000 - L1PA2 LINE L1 -790 5356 5252 6924 13 0 0 chr4_random 1547813 1548593 -17303220 + L1PA2 LINE L1 5370 6153 -2 900 195 53 53 chr4_random 1549506 1549732 -17302081 + Charlie1 DNA MER1_type 1428 1653 -1108 218 228 25 0 chr4_random 1549732 1549811 -17302002 + (TA)n Simple_repeat Simple_repeat 1 81 0 4197 206 60 20 chr4_random 1549827 1550919 -17300894 + Charlie1 DNA MER1_type 1620 2755 -6 410 357 105 10 chr4_random 1551712 1552006 -17299807 + L2 LINE L2 1784 2105 -1209 341 373 169 8 chr4_random 1552033 1552411 -17299402 + L2 LINE L2 2341 2779 -535 248 215 15 0 chr4_random 1552411 1552476 -17299337 - L1MEc LINE L1 -2888 4053 3988 * 5281 32 0 23 chr4_random 1552472 1553136 -17298677 - L1PA4 LINE L1 -958 5188 4540 7297 39 1 3 chr4_random 1553136 1554102 -17297711 + L1PA4 LINE L1 5192 6155 0 2242 230 119 56 chr4_random 1554109 1555221 -17296592 - L1MEc LINE L1 -2936 4005 2904 2086 57 0 0 chr4_random 1555514 1555776 -17296037 - L1PA7 LINE L1 -11 6143 5882 289 212 15 0 chr4_random 1555863 1555929 -17295884 - MLT1E3 LTR MaLR 0 654 588 464 204 29 0 chr4_random 1555940 1556043 -17295770 + L1MB5 LINE L1 6060 6165 -9 992 300 21 22 chr4_random 1556150 1556464 -17295349 - MLT1E3 LTR MaLR -51 573 216 617 323 56 29 chr4_random 1556524 1556865 -17294948 - L1MEc LINE L1 -5260 1163 814 713 312 52 18 chr4_random 1557102 1557483 -17294330 - L1MEc LINE L1 -6006 417 24 640 211 119 46 chr4_random 1558011 1558296 -17293517 + pTR5 LTR ERV1 742 1047 -1391 3749 97 265 0 chr4_random 1558354 1559007 -17292806 + LTR12 LTR ERV1 1 826 0 376 293 155 6 chr4_random 1559211 1559385 -17292428 + LTR16A LTR ERVL 251 450 0 2000 198 65 51 chr4_random 1559490 1559980 -17291833 + MLT1D LTR MaLR 1 497 -8 26 50 0 0 chr4_random 1560135 1560175 -17291638 + AT_rich Low_complexity Low_complexity 1 40 0 276 224 0 0 chr4_random 1561930 1561997 -17289816 + T-rich Low_complexity Low_complexity 1 67 0 224 236 18 0 chr4_random 1562825 1562880 -17288933 + (TTCA)n Simple_repeat Simple_repeat 2 57 0 60 71 0 7 chr4_random 1563148 1563240 -17288573 + AT_rich Low_complexity Low_complexity 1 93 -47 2059 146 3 0 chr4_random 1563240 1563549 -17288264 + AluSx SINE Alu 1 310 -2 60 71 0 7 chr4_random 1563549 1563597 -17288216 + AT_rich Low_complexity Low_complexity 93 140 0 271 243 130 60 chr4_random 1563746 1563931 -17287882 - L1ME LINE L1 -362 5759 5562 1928 150 3 0 chr4_random 1564059 1564345 -17287468 - AluSx SINE Alu -19 293 7 727 303 15 0 chr4_random 1564489 1564684 -17287129 + MIR SINE MIR 19 216 -46 21 57 0 0 chr4_random 1566482 1566517 -17285296 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4_random 1566623 1566651 -17285162 + AT_rich Low_complexity Low_complexity 1 28 0 523 328 92 0 chr4_random 1567617 1567855 -17283958 + MIR SINE MIR 3 262 0 21 82 0 0 chr4_random 1567856 1567905 -17283908 + AT_rich Low_complexity Low_complexity 1 49 0 238 234 0 21 chr4_random 1568290 1568384 -17283429 + (TA)n Simple_repeat Simple_repeat 1 92 0 288 152 0 0 chr4_random 1569535 1569601 -17282212 + (TA)n Simple_repeat Simple_repeat 2 67 0 22 0 0 0 chr4_random 1569916 1569938 -17281875 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4_random 1570018 1570040 -17281773 + AT_rich Low_complexity Low_complexity 1 22 0 213 367 37 0 chr4_random 1570189 1570298 -17281515 + MIR SINE MIR 149 261 -1 2113 114 0 25 chr4_random 1570786 1571103 -17280710 - AluSx SINE Alu -3 309 1 36 23 0 0 chr4_random 1571678 1571721 -17280092 + AT_rich Low_complexity Low_complexity 1 43 0 7478 28 7 1 chr4_random 1571801 1573193 -17278620 + L1PA4 LINE L1 4758 6155 0 2348 106 36 0 chr4_random 1573250 1573610 -17278203 - L1PB1 LINE L1 0 6151 5779 702 291 83 51 chr4_random 1573829 1574492 -17277321 + L1MEc LINE L1 1250 1933 -4463 2565 242 86 26 chr4_random 1574536 1575015 -17276798 + L1MEc LINE L1 2154 2603 -3612 2005 112 0 11 chr4_random 1575015 1575301 -17276512 - AluSc SINE Alu -14 295 13 2565 242 86 26 chr4_random 1575301 1575971 -17275842 + L1MEc LINE L1 2603 3328 -2887 22 35 0 0 chr4_random 1576695 1576724 -17275089 + AT_rich Low_complexity Low_complexity 1 29 0 347 377 43 12 chr4_random 1577537 1577794 -17274019 + L2 LINE L2 2826 3090 -223 2078 224 83 18 chr4_random 1577801 1578752 -17273061 - L1M4 LINE L1 -2166 4696 3638 1101 252 28 52 chr4_random 1578753 1579305 -17272508 - L1PBa LINE L1 -3610 3252 2721 560 258 36 21 chr4_random 1579283 1579477 -17272336 - L1 LINE L1 -3607 3255 3059 * 963 284 119 15 chr4_random 1579857 1580185 -17271628 + MLT1E LTR MaLR 8 369 -224 * 3759 164 68 5 chr4_random 1580179 1580851 -17270962 - MER50 LTR ERV1 -19 715 1 1007 243 69 0 chr4_random 1580851 1581069 -17270744 + MLT1E LTR MaLR 361 593 0 25 0 0 0 chr4_random 1581458 1581483 -17270330 + AT_rich Low_complexity Low_complexity 1 25 0 260 261 22 63 chr4_random 1581500 1581566 -17270247 - L1MEc LINE L1 -3602 2613 2546 1818 174 7 0 chr4_random 1581566 1581865 -17269948 - AluSx SINE Alu -11 301 1 260 261 22 63 chr4_random 1581865 1582095 -17269718 - L1MEc LINE L1 -3669 2546 2208 26 0 0 0 chr4_random 1582657 1582683 -17269130 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr4_random 1583744 1583772 -17268041 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr4_random 1583994 1584027 -17267786 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr4_random 1584431 1584456 -17267357 + AT_rich Low_complexity Low_complexity 1 25 0 409 300 72 56 chr4_random 1585573 1585893 -17265920 + HAL1b LINE L1 323 647 -701 2281 154 43 17 chr4_random 1586255 1586670 -17265143 - MSTB LTR MaLR 0 426 1 2331 229 30 2 chr4_random 1586960 1587423 -17264390 - MER70B LTR ERVL -102 476 1 3615 230 55 16 chr4_random 1587474 1589341 -17262472 - L1MB5 LINE L1 0 6174 4240 487 258 44 111 chr4_random 1589358 1589583 -17262230 + MIR SINE MIR 48 257 -5 2135 103 33 0 chr4_random 1589967 1590268 -17261545 + AluSp SINE Alu 1 311 -2 24 32 0 0 chr4_random 1590596 1590627 -17261186 + AT_rich Low_complexity Low_complexity 1 31 0 4402 208 43 11 chr4_random 1590629 1591696 -17260117 - L1MA10 LINE L1 -2 6332 5227 21 36 0 0 chr4_random 1591902 1591930 -17259883 + AT_rich Low_complexity Low_complexity 1 28 0 543 56 75 0 chr4_random 1592151 1592258 -17259555 + GA-rich Low_complexity Low_complexity 4 118 0 1551 156 107 10 chr4_random 1592318 1592626 -17259187 + MER44D DNA MER2_type 1 608 -1 305 334 91 30 chr4_random 1592660 1592989 -17258824 + L1MC/D LINE L1 4485 4833 -1313 23 0 0 0 chr4_random 1593109 1593132 -17258681 + AT_rich Low_complexity Low_complexity 1 23 0 563 244 131 0 chr4_random 1593257 1593433 -17258380 - L1ME3 LINE L1 -306 5856 5658 404 275 47 5 chr4_random 1593440 1593651 -17258162 - L1ME3 LINE L1 -655 5509 5290 2251 126 3 51 chr4_random 1593656 1594030 -17257783 - THE1B LTR MaLR 0 364 9 412 276 8 0 chr4_random 1594031 1594154 -17257659 - L1ME3 LINE L1 -866 5280 5157 269 269 77 10 chr4_random 1594168 1594272 -17257541 - MLT1G1 LTR MaLR 0 595 485 359 289 31 0 chr4_random 1594382 1594510 -17257303 + L1MC/D LINE L1 5668 5799 -2009 1299 230 38 32 chr4_random 1594895 1595264 -17256549 - MLT1A2 LTR MaLR 0 374 4 214 325 0 0 chr4_random 1595277 1595357 -17256456 + (TA)n Simple_repeat Simple_repeat 1 80 0 2444 133 6 0 chr4_random 1595730 1596092 -17255721 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4_random 1597575 1597596 -17254217 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4_random 1597874 1597898 -17253915 + AT_rich Low_complexity Low_complexity 1 24 0 2707 13 0 3 chr4_random 1598022 1598329 -17253484 - AluYa5 SINE Alu -5 306 1 1270 120 0 0 chr4_random 1598511 1598686 -17253127 + AluSg/x SINE Alu 136 310 -2 6328 60 39 11 chr4_random 1598706 1600029 -17251784 + L1PA7 LINE L1 4784 6154 0 1473 44 14 0 chr4_random 1600030 1600258 -17251555 + (GGGAA)n Simple_repeat Simple_repeat 3 232 0 1956 110 3 30 chr4_random 1600625 1600924 -17250889 + AluSx SINE Alu 1 291 -21 230 347 90 13 chr4_random 1600990 1601262 -17250551 + L3 LINE CR1 162 502 -1075 221 364 154 18 chr4_random 1601287 1601559 -17250254 + L3 LINE CR1 637 945 -632 214 301 27 14 chr4_random 1601689 1601762 -17250051 + L3 LINE CR1 1354 1427 -150 4997 232 48 19 chr4_random 1601957 1603100 -17248713 - Charlie1a DNA MER1_type -1311 1450 255 1975 99 33 0 chr4_random 1603100 1603405 -17248408 - AluSp SINE Alu 0 314 1 4997 232 48 19 chr4_random 1603405 1603663 -17248150 - Charlie1a DNA MER1_type -2506 255 6 403 280 140 0 chr4_random 1603670 1603820 -17247993 + MIR SINE MIR 10 180 -82 2546 46 0 0 chr4_random 1604054 1604356 -17247457 - AluY SINE Alu -9 302 1 22 0 0 0 chr4_random 1604468 1604490 -17247323 + AT_rich Low_complexity Low_complexity 1 22 0 591 290 11 11 chr4_random 1604914 1605090 -17246723 + MER45A DNA AcHobo 3 178 0 377 290 38 33 chr4_random 1605090 1605279 -17246534 - MLT1F1 LTR MaLR -341 254 25 579 268 84 21 chr4_random 1605391 1605581 -17246232 + MIR SINE MIR 13 214 -48 2012 163 5 63 chr4_random 1605732 1606143 -17245670 - MLT1B LTR MaLR -3 387 1 21 57 0 0 chr4_random 1607402 1607437 -17244376 + AT_rich Low_complexity Low_complexity 1 35 0 2339 37 34 7 chr4_random 1607506 1607802 -17244011 - AluY SINE Alu -7 304 1 22 0 0 0 chr4_random 1608081 1608103 -17243710 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr4_random 1608474 1608497 -17243316 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 633 318 86 20 chr4_random 1609359 1609661 -17242152 - ERVL LTR ERVL -1927 3837 3516 422 253 145 69 chr4_random 1609700 1610032 -17241781 - L2 LINE L2 -109 3204 2848 1583 297 150 16 chr4_random 1610095 1610829 -17240984 - L2 LINE L2 -478 2836 2005 277 272 39 19 chr4_random 1610840 1610943 -17240870 - L1MEd LINE L1 -4996 1123 1019 633 294 91 57 chr4_random 1611137 1611677 -17240136 - L1MEd LINE L1 -5100 1019 462 1447 253 129 16 chr4_random 1614543 1615124 -17236689 + MER76 LTR ERV 1 647 -41 15000 46 6 0 chr4_random 1617568 1620195 -17231618 - L1PA5 LINE L1 0 6154 3514 15594 49 2 5 chr4_random 1620195 1621470 -17230343 + L1P LINE L1 1513 2784 -3362 2125 92 3 0 chr4_random 1621470 1621777 -17230036 + AluY SINE Alu 1 308 0 15594 49 2 5 chr4_random 1621777 1622509 -17229304 + L1P LINE L1 2784 3516 -2630 479 17 17 0 chr4_random 1622849 1622909 -17228904 + (TG)n Simple_repeat Simple_repeat 2 62 0 441 338 45 48 chr4_random 1623268 1623602 -17228211 - HAL1 LINE L1 -5 2502 2170 439 280 38 0 chr4_random 1623759 1623891 -17227922 + MIR SINE MIR 126 262 0 350 225 129 132 chr4_random 1623969 1624294 -17227519 + MLT1L LTR MaLR 154 477 -138 414 317 67 65 chr4_random 1624534 1624875 -17226938 + HAL1 LINE L1 1906 2247 -260 351 326 37 66 chr4_random 1624873 1625223 -17226590 + L1M4 LINE L1 4783 5122 -1024 * 2054 157 55 0 chr4_random 1625236 1625618 -17226195 + MER57A LTR ERV1 1 403 0 2451 184 16 0 chr4_random 1625618 1626048 -17225765 + MER57-int LTR ERV1 1 437 -7100 * 6543 113 19 31 chr4_random 1626045 1626179 -17225634 + MER57-int LTR ERV1 6142 6276 -1261 2302 75 0 10 chr4_random 1626179 1626474 -17225339 - AluY SINE Alu -18 293 2 2143 119 10 0 chr4_random 1626478 1626773 -17225040 - AluSg SINE Alu -12 298 1 6543 113 19 31 chr4_random 1626773 1627661 -17224152 + MER57-int LTR ERV1 6279 7157 -380 622 165 18 9 chr4_random 1627662 1627771 -17224042 + LTR54B LTR ERV1 16 125 -373 277 172 86 0 chr4_random 1627774 1627832 -17223981 + MER57-int LTR ERV1 7273 7335 -202 232 185 74 0 chr4_random 1627832 1627886 -17223927 + LTR54B LTR ERV1 234 291 -207 974 132 0 0 chr4_random 1627886 1628030 -17223783 + MER57A-int LTR ERV1 7393 7536 -1 2282 162 18 0 chr4_random 1628031 1628427 -17223386 + MER57A LTR ERV1 1 403 0 197 136 0 45 chr4_random 1631821 1631865 -17219948 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 487 291 138 5 chr4_random 1631898 1632087 -17219726 + MIR SINE MIR 49 262 0 481 277 139 25 chr4_random 1633751 1633953 -17217860 - MIR SINE MIR -10 252 28 41 0 0 0 chr4_random 1634625 1634666 -17217147 + AT_rich Low_complexity Low_complexity 1 41 0 2138 112 0 0 chr4_random 1635195 1635480 -17216333 - AluSc SINE Alu -22 287 3 227 143 0 0 chr4_random 1635814 1635849 -17215964 - U2 snRNA snRNA -153 35 1 1556 208 20 38 chr4_random 1636677 1636777 -17215036 + MER58B DNA MER1_type 1 101 -2319 1864 107 67 64 chr4_random 1636777 1637151 -17214662 - THE1C LTR MaLR 0 375 1 1556 208 20 38 chr4_random 1637151 1637397 -17214416 + MER58B DNA MER1_type 101 341 0 426 303 105 0 chr4_random 1637470 1637632 -17214181 + MIR SINE MIR 52 230 -32 21 0 0 0 chr4_random 1638409 1638430 -17213383 + AT_rich Low_complexity Low_complexity 1 21 0 705 253 51 55 chr4_random 1639052 1639305 -17212508 + L1ME3 LINE L1 5904 6155 -7 275 287 67 45 chr4_random 1640251 1640474 -17211339 + L1M4 LINE L1 2287 2514 -3632 22 56 0 0 chr4_random 1640968 1641004 -17210809 + AT_rich Low_complexity Low_complexity 1 36 0 13904 181 34 50 chr4_random 1641174 1643363 -17208450 + L1M2 LINE L1 3103 5180 -2539 2079 106 0 7 chr4_random 1643363 1643681 -17208132 + AluY SINE Alu 1 316 0 13904 181 34 50 chr4_random 1643681 1645672 -17206141 + L1M2 LINE L1 5180 7202 -517 303 140 0 0 chr4_random 1645675 1645725 -17206088 + (TG)n Simple_repeat Simple_repeat 2 51 0 1086 135 42 5 chr4_random 1645766 1645958 -17205855 + MER39 LTR ERV1 509 707 0 2462 53 0 0 chr4_random 1646127 1646427 -17205386 + AluY SINE Alu 1 300 -11 4814 131 133 122 chr4_random 1646447 1647993 -17203820 + pTR5 LTR ERV1 743 2438 0 640 298 72 30 chr4_random 1648291 1648726 -17203087 + L1M4 LINE L1 5273 5736 -448 33 0 0 0 chr4_random 1648866 1648899 -17202914 + AT_rich Low_complexity Low_complexity 1 33 0 607 266 17 17 chr4_random 1649117 1649294 -17202519 + MER5B DNA MER1_type 1 177 -1 402 74 0 0 chr4_random 1649414 1649468 -17202345 + (TA)n Simple_repeat Simple_repeat 1 54 0 482 251 114 121 chr4_random 1650752 1651207 -17200606 + LTR16A1 LTR ERVL 6 457 0 475 200 70 20 chr4_random 1652079 1652179 -17199634 + MER74A LTR ERVL 441 545 -13 1824 152 60 9 chr4_random 1652292 1652641 -17199172 - L1PA15 LINE L1 -1 6164 5798 7617 238 34 24 chr4_random 1652643 1655362 -17196451 - L1PA13 LINE L1 -2604 4193 1434 429 229 48 19 chr4_random 1655458 1655563 -17196250 + MER74A LTR ERVL 441 548 -10 * 2897 106 0 48 chr4_random 1655553 1656007 -17195806 + MER4B LTR ERV1 179 610 0 1292 192 51 54 chr4_random 1656221 1656534 -17195279 + AluJb SINE Alu 1 312 0 201 147 0 0 chr4_random 1656535 1656569 -17195244 + (GGGAGA)n Simple_repeat Simple_repeat 3 36 0 543 249 140 68 chr4_random 1656657 1657130 -17194683 + MLT1G1 LTR MaLR 1 524 -31 1721 164 71 12 chr4_random 1657153 1657489 -17194324 - MER46B DNA MER2_type -1 235 5 635 280 102 13 chr4_random 1659215 1659451 -17192362 - MLT1J1 LTR MaLR -143 303 47 183 181 96 121 chr4_random 1660467 1660550 -17191263 - MIR SINE MIR -6 256 176 21 0 0 0 chr4_random 1660814 1660835 -17190978 + AT_rich Low_complexity Low_complexity 1 21 0 182 62 31 0 chr4_random 1661111 1661143 -17190670 + (TG)n Simple_repeat Simple_repeat 2 34 0 208 171 0 0 chr4_random 1662100 1662135 -17189678 + MER91B DNA MER1_type 29 63 -127 956 347 76 14 chr4_random 1663041 1663617 -17188196 + L2 LINE L2 2210 2821 -493 22 0 0 0 chr4_random 1664073 1664095 -17187718 + AT_rich Low_complexity Low_complexity 1 22 0 708 289 20 51 chr4_random 1664124 1664377 -17187436 + MIR SINE MIR 18 262 0 241 346 54 23 chr4_random 1664382 1664512 -17187301 + MIR SINE MIR 12 145 -117 725 274 92 77 chr4_random 1665560 1666079 -17185734 + LTR67 LTR ERVL 19 545 -12 451 312 70 0 chr4_random 1666183 1666369 -17185444 - MIR SINE MIR -1 261 63 617 250 57 44 chr4_random 1669257 1669485 -17182328 + LTR16A1 LTR ERVL 227 457 0 518 292 30 83 chr4_random 1669986 1670325 -17181488 + HERV16 LTR ERVL 464 784 -4212 * 1211 322 39 7 chr4_random 1670320 1670777 -17181036 + HERV16 LTR ERVL 924 1395 -3601 599 226 32 37 chr4_random 1670959 1671149 -17180664 - MER4C LTR ERV1 0 465 277 2112 108 4 146 chr4_random 1671169 1671662 -17180151 - MER4A LTR ERV1 -241 423 1 1367 333 34 23 chr4_random 1671674 1671938 -17179875 + HERV16 LTR ERVL 1688 1948 -3048 3397 143 31 71 chr4_random 1671938 1672658 -17179155 - LTR8 LTR ERV1 0 691 1 1367 333 34 23 chr4_random 1672658 1672925 -17178888 + HERV16 LTR ERVL 1948 2225 -2771 814 212 169 56 chr4_random 1672977 1673279 -17178534 - MLT1E2 LTR MaLR -75 551 216 1176 199 14 0 chr4_random 1673410 1673626 -17178187 - MLT1D LTR MaLR 0 505 287 838 279 88 35 chr4_random 1673849 1674279 -17177534 + LTR16A1 LTR ERVL 5 457 0 450 292 135 25 chr4_random 1674402 1675260 -17176553 - L1ME3A LINE L1 -213 6026 5073 271 303 64 22 chr4_random 1675824 1676091 -17175722 - L1ME3A LINE L1 -2154 4061 3784 4546 75 8 5 chr4_random 1676372 1676983 -17174830 - L1PA11 LINE L1 0 6174 5562 228 368 19 19 chr4_random 1677063 1677169 -17174644 - L2 LINE L2 -604 2710 2605 270 81 0 0 chr4_random 1678757 1678794 -17173019 + (T)n Simple_repeat Simple_repeat 1 37 0 1962 122 0 10 chr4_random 1680269 1680456 -17171357 - AluSx SINE Alu 0 308 124 234 0 0 0 chr4_random 1680456 1680482 -17171331 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1962 122 0 10 chr4_random 1680482 1680605 -17171208 - AluSx SINE Alu -184 124 1 38 22 0 0 chr4_random 1680685 1680730 -17171083 + AT_rich Low_complexity Low_complexity 1 45 0 1147 148 65 0 chr4_random 1680730 1680960 -17170853 - L1MA8 LINE L1 -3 6288 6044 236 348 89 0 chr4_random 1681191 1681326 -17170487 - L1M4 LINE L1 -636 5538 5392 1503 302 46 24 chr4_random 1681584 1682056 -17169757 - Zaphod DNA AcHobo -3451 580 93 225 94 0 0 chr4_random 1682056 1682088 -17169725 + (TG)n Simple_repeat Simple_repeat 1 32 0 1503 302 46 24 chr4_random 1682088 1682158 -17169655 - Zaphod DNA AcHobo -3938 93 26 357 253 94 35 chr4_random 1682417 1682587 -17169226 - MIR SINE MIR -58 204 25 455 245 108 36 chr4_random 1683931 1684180 -17167633 - L1MEd LINE L1 -4918 1287 1058 2274 112 0 0 chr4_random 1684236 1684539 -17167274 - AluSg SINE Alu -5 305 3 183 80 0 0 chr4_random 1685324 1685349 -17166464 + (TTTG)n Simple_repeat Simple_repeat 3 27 0 27 0 0 0 chr4_random 1687573 1687600 -17164213 + AT_rich Low_complexity Low_complexity 1 27 0 2238 104 3 25 chr4_random 1687921 1688237 -17163576 + AluSx SINE Alu 1 309 -3 535 189 23 0 chr4_random 1688734 1688866 -17162947 - LTR37A LTR ERV1 -2 424 290 7233 179 41 58 chr4_random 1690484 1692084 -17159729 + L1MA5A LINE L1 2635 4198 -1948 2472 62 0 3 chr4_random 1692084 1692392 -17159421 + AluY SINE Alu 1 307 -4 7233 179 41 58 chr4_random 1692392 1692716 -17159097 + L1MA5A LINE L1 4198 4526 -1620 246 62 0 0 chr4_random 1692716 1692748 -17159065 + (CA)n Simple_repeat Simple_repeat 1 32 0 * 300 27 0 0 chr4_random 1692747 1692784 -17159029 + (GA)n Simple_repeat Simple_repeat 2 38 0 4736 163 82 26 chr4_random 1692785 1694220 -17157593 + L1MA5A LINE L1 4801 6297 0 2258 113 0 0 chr4_random 1694435 1694736 -17157077 - AluSx SINE Alu -11 301 1 1632 185 0 38 chr4_random 1695727 1696041 -17155772 + AluJb SINE Alu 1 302 -10 21 36 0 0 chr4_random 1697275 1697303 -17154510 + AT_rich Low_complexity Low_complexity 1 28 0 1268 182 54 32 chr4_random 1697716 1698214 -17153599 + LTR47A LTR ERVL 1 452 0 2150 181 83 93 chr4_random 1698813 1699547 -17152266 - LTR8A LTR ERV1 0 727 1 2206 122 0 0 chr4_random 1700119 1700431 -17151382 - AluSx SINE Alu 0 312 1 2689 264 47 22 chr4_random 1705633 1706975 -17144838 - L1ME1 LINE L1 -9 6157 4786 300 137 0 0 chr4_random 1706975 1707026 -17144787 + (TC)n Simple_repeat Simple_repeat 2 52 0 878 185 0 0 chr4_random 1707032 1707178 -17144635 - FRAM SINE Alu -30 146 1 585 265 31 43 chr4_random 1707178 1707435 -17144378 - L1ME1 LINE L1 -1346 4800 4547 584 303 111 58 chr4_random 1707487 1708045 -17143768 - L2 LINE L2 0 3313 2740 204 232 0 18 chr4_random 1708243 1708299 -17143514 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 317 252 49 49 chr4_random 1710183 1710306 -17141507 + MER5C DNA MER1_type 2 124 -200 24 0 0 0 chr4_random 1710753 1710777 -17141036 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4_random 1710952 1710976 -17140837 + AT_rich Low_complexity Low_complexity 1 24 0 2014 142 3 7 chr4_random 1711569 1711865 -17139948 - AluSx SINE Alu -17 295 1 1037 241 67 35 chr4_random 1711893 1712208 -17139605 + L1MD2 LINE L1 6000 6324 -35 955 271 121 53 chr4_random 1713117 1713619 -17138194 + MLT1G LTR MaLR 8 543 -12 2416 58 0 3 chr4_random 1713875 1714166 -17137647 + AluY SINE Alu 1 290 -21 1488 129 29 18 chr4_random 1714277 1714555 -17137258 - L1MA4A LINE L1 -2 6301 6021 8255 121 19 8 chr4_random 1714710 1715479 -17136334 - HSMAR2 DNA Mariner -1 1301 510 2384 63 3 13 chr4_random 1715479 1715782 -17136031 - AluY SINE Alu -11 300 1 8255 121 19 8 chr4_random 1715782 1716298 -17135515 - HSMAR2 DNA Mariner -792 510 1 29 0 0 0 chr4_random 1716800 1716829 -17134984 + AT_rich Low_complexity Low_complexity 1 29 0 261 325 89 79 chr4_random 1717245 1717525 -17134288 - L1MEd LINE L1 -5585 534 252 21 82 0 0 chr4_random 1717817 1717866 -17133947 + AT_rich Low_complexity Low_complexity 1 49 0 196 292 28 14 chr4_random 1718352 1718424 -17133389 + MIR SINE MIR 78 150 -112 731 141 57 34 chr4_random 1720026 1720203 -17131610 - MER53 DNA DNA -7 182 2 21 36 0 0 chr4_random 1720354 1720382 -17131431 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr4_random 1721089 1721132 -17130681 + AT_rich Low_complexity Low_complexity 1 43 0 247 235 0 0 chr4_random 1721341 1721392 -17130421 - MARNA DNA Mariner -206 380 330 3154 191 46 7 chr4_random 1721392 1722111 -17129702 - L1MB4 LINE L1 0 6180 5434 800 198 73 94 chr4_random 1722113 1722451 -17129362 + L1MB7 LINE L1 765 1109 -5456 412 95 0 0 chr4_random 1722558 1722621 -17129192 + L1MA7 LINE L1 6216 6278 -13 290 190 17 0 chr4_random 1722624 1722682 -17129131 + L1MB7 LINE L1 4021 4079 -2565 660 254 69 28 chr4_random 1722689 1722977 -17128836 + L1MB7 LINE L1 4148 4447 -2197 389 261 31 23 chr4_random 1722980 1723110 -17128703 + L1MB7 LINE L1 4503 4633 -2011 234 188 87 14 chr4_random 1723110 1723179 -17128634 + LTR28 LTR ERV1 1 74 -946 2241 180 34 5 chr4_random 1723188 1723566 -17128247 + MER61D LTR ERV1 113 501 0 2698 255 42 24 chr4_random 1723577 1723957 -17127856 + L1MB7 LINE L1 4641 5013 -1631 2509 52 7 3 chr4_random 1723957 1724266 -17127547 + AluY SINE Alu 1 310 -1 2698 255 42 24 chr4_random 1724266 1724924 -17126889 + L1MB7 LINE L1 5013 5698 -946 1425 206 69 18 chr4_random 1724933 1725326 -17126487 - LTR52 LTR ERVL -8 413 1 4216 187 42 7 chr4_random 1725340 1726260 -17125553 + L1MB7 LINE L1 5716 6668 -14 2189 98 7 7 chr4_random 1726840 1727135 -17124678 + AluSg SINE Alu 1 295 -15 4098 179 49 9 chr4_random 1727224 1728018 -17123795 - LTR1B LTR ERV1 0 826 1 1030 76 0 0 chr4_random 1728698 1728830 -17122983 + AluY SINE Alu 1 132 -179 2291 68 34 7 chr4_random 1728832 1729126 -17122687 + AluY SINE Alu 1 302 -9 25 95 0 0 chr4_random 1729175 1729249 -17122564 + AT_rich Low_complexity Low_complexity 1 74 0 282 279 101 47 chr4_random 1732773 1732902 -17118911 + L2 LINE L2 3178 3313 0 582 278 97 18 chr4_random 1732920 1733147 -17118666 + MIR SINE MIR 7 251 -11 26 0 0 0 chr4_random 1733153 1733179 -17118634 + AT_rich Low_complexity Low_complexity 1 26 0 1024 307 39 3 chr4_random 1733504 1733862 -17117951 - HERV16 LTR ERVL -3664 1332 962 24 0 0 0 chr4_random 1734622 1734646 -17117167 + AT_rich Low_complexity Low_complexity 1 24 0 342 236 22 11 chr4_random 1734739 1734828 -17116985 + MER94 DNA DNA 4 93 -41 228 274 19 94 chr4_random 1735342 1735448 -17116365 - MLT1-int LTR MaLR -487 884 787 460 217 80 33 chr4_random 1735489 1735701 -17116112 + LTR37B LTR ERV1 245 466 -2 2349 87 6 13 chr4_random 1737408 1737720 -17114093 - AluSg SINE Alu 0 310 1 2227 96 0 7 chr4_random 1738706 1738999 -17112814 + AluSc SINE Alu 1 291 -18 23 33 0 0 chr4_random 1739077 1739107 -17112706 + AT_rich Low_complexity Low_complexity 1 30 0 249 327 37 19 chr4_random 1739896 1740003 -17111810 - MIR SINE MIR -3 259 151 308 330 160 0 chr4_random 1740113 1740319 -17111494 + MIR SINE MIR 5 243 -19 259 250 125 0 chr4_random 1740784 1740856 -17110957 - MIR SINE MIR -133 129 49 1201 240 118 23 chr4_random 1741201 1741337 -17110476 - MLT2F LTR ERVL 0 663 541 4042 121 6 23 chr4_random 1741337 1741981 -17109832 + MER41B LTR ERV1 1 633 -2 1201 240 118 23 chr4_random 1741981 1742408 -17109405 - MLT2F LTR ERVL -122 541 1 494 212 15 23 chr4_random 1742413 1742545 -17109268 - ERVL-F LTR ERVL -13 5751 5621 3106 271 39 16 chr4_random 1742557 1743143 -17108670 + L1M4b LINE L1 14 626 -6233 1818 151 58 21 chr4_random 1743143 1743468 -17108345 + MER1B DNA MER1_type 1 337 0 3106 271 39 16 chr4_random 1743468 1743730 -17108083 + L1M4b LINE L1 626 881 -5978 1332 249 140 11 chr4_random 1743756 1744193 -17107620 - ERVL-F LTR ERVL -1280 4484 3992 5061 300 78 17 chr4_random 1744193 1746211 -17105602 - ERVL-F LTR ERVL -1779 3875 1460 2856 211 59 19 chr4_random 1746211 1746838 -17104975 + MER82 DNA MER2_type 1 652 -1 5061 300 78 17 chr4_random 1746838 1748188 -17103625 - ERVL-F LTR ERVL -4194 1460 193 275 281 21 21 chr4_random 1748254 1748350 -17103463 - ERVL-F LTR ERVL -5555 99 4 1472 263 56 23 chr4_random 1748356 1748946 -17102867 - MLT2F LTR ERVL -8 655 1 2237 156 37 13 chr4_random 1749334 1749713 -17102100 - MER61D LTR ERV1 0 501 114 3787 181 35 2 chr4_random 1751198 1752361 -17099452 - L1MA7 LINE L1 -271 6020 4815 2141 136 0 0 chr4_random 1753784 1754092 -17097721 + AluSg SINE Alu 1 308 -2 315 310 32 65 chr4_random 1755776 1755931 -17095882 + MIR3 SINE MIR 16 165 -43 30 27 0 0 chr4_random 1756032 1756069 -17095744 + AT_rich Low_complexity Low_complexity 1 37 0 575 327 20 20 chr4_random 1756186 1756434 -17095379 + MLT2E LTR ERVL 381 628 0 214 192 19 0 chr4_random 1758368 1758420 -17093393 + CT-rich Low_complexity Low_complexity 2 54 0 321 231 37 67 chr4_random 1759127 1759261 -17092552 - L1ME4a LINE L1 -3 6118 5989 882 324 40 3 chr4_random 1759955 1760282 -17091531 + MLT1I LTR MaLR 71 409 0 314 236 16 49 chr4_random 1760448 1760571 -17091242 - L1ME4a LINE L1 -210 5911 5793 504 86 0 0 chr4_random 1762904 1762974 -17088839 + (CA)n Simple_repeat Simple_repeat 2 71 0 949 216 10 0 chr4_random 1763271 1763470 -17088343 + MER3 DNA MER1_type 7 207 -2 21 0 0 0 chr4_random 1764313 1764334 -17087479 + AT_rich Low_complexity Low_complexity 1 21 0 1877 194 90 14 chr4_random 1764377 1764799 -17087014 + MER70A LTR ERVL 1 454 -18 1025 162 102 0 chr4_random 1764869 1765081 -17086732 + MER33 DNA MER1_type 7 247 -2338 1964 131 3 26 chr4_random 1765081 1765394 -17086419 - AluSq SINE Alu -7 306 1 1025 162 102 0 chr4_random 1765394 1765416 -17086397 + MER33 DNA MER1_type 247 265 -59 182 293 67 43 chr4_random 1765449 1765613 -17086200 - L2 LINE L2 -999 2315 2148 963 118 0 0 chr4_random 1766030 1766157 -17085656 + AluSq/x SINE Alu 1 127 -186 25 51 0 0 chr4_random 1766519 1766558 -17085255 + AT_rich Low_complexity Low_complexity 1 39 0 1206 151 16 12 chr4_random 1767696 1767947 -17083866 + LTR1 LTR ERV1 1 252 -533 524 318 32 23 chr4_random 1768898 1769115 -17082698 - MIR SINE MIR -31 231 13 200 222 0 0 chr4_random 1769328 1769373 -17082440 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 276 111 0 0 chr4_random 1770655 1770700 -17081113 + (CA)n Simple_repeat Simple_repeat 1 45 0 1036 250 74 24 chr4_random 1770700 1771120 -17080693 + L1MA9 LINE L1 5806 6246 -66 1849 147 17 46 chr4_random 1771212 1771559 -17080254 - MER1B DNA MER1_type 0 337 1 196 333 74 0 chr4_random 1772035 1772116 -17079697 - L3b LINE CR1 -90 1493 1407 4534 165 124 24 chr4_random 1772701 1774106 -17077707 - pTR5 LTR ERV1 0 2438 741 467 292 69 0 chr4_random 1776112 1776242 -17075571 - MIR SINE MIR -120 142 4 284 280 104 28 chr4_random 1777284 1777466 -17074347 - LTR33A LTR ERVL 0 523 328 2181 119 36 30 chr4_random 1777871 1778233 -17073580 + THE1B LTR MaLR 1 364 0 2150 118 0 0 chr4_random 1778490 1778777 -17073036 - AluSc SINE Alu 0 309 23 2096 200 33 2 chr4_random 1779045 1779524 -17072289 - L1MB4 LINE L1 -1 6179 5686 852 147 35 44 chr4_random 1779528 1779809 -17072004 - L1MB4 LINE L1 -718 5456 5196 3457 114 19 23 chr4_random 1779811 1780280 -17071533 - L1PA15 LINE L1 -6 6159 5691 1813 128 26 39 chr4_random 1780280 1780586 -17071227 - AluSx SINE Alu -10 302 1 3457 114 19 23 chr4_random 1780586 1780679 -17071134 - L1PA15 LINE L1 -474 5691 5599 2411 58 24 0 chr4_random 1780679 1780972 -17070841 - AluY SINE Alu -11 300 1 2655 175 3 13 chr4_random 1780972 1781610 -17070203 - L1PA15 LINE L1 -736 5429 4801 339 310 42 21 chr4_random 1781610 1781752 -17070061 - L1MEd LINE L1 -5072 1875 1731 2140 107 0 21 chr4_random 1781807 1781938 -17069875 + AluSx SINE Alu 1 133 -179 495 180 20 0 chr4_random 1781938 1782038 -17069775 + L1PA12 LINE L1 6067 6168 0 2140 107 0 21 chr4_random 1782038 1782197 -17069616 + AluSx SINE Alu 133 285 -27 21 0 0 0 chr4_random 1782197 1782218 -17069595 + AT_rich Low_complexity Low_complexity 1 21 0 363 178 11 89 chr4_random 1782411 1782501 -17069312 - MLT1B LTR MaLR -68 322 240 1427 201 105 64 chr4_random 1782510 1783007 -17068806 - L1MEd LINE L1 -5680 1179 663 1648 307 24 24 chr4_random 1783020 1783606 -17068207 - L1MEd LINE L1 -6272 587 2 13930 186 28 23 chr4_random 1783644 1785418 -17066395 + L1MA4A LINE L1 1 1764 -5241 1851 117 0 4 chr4_random 1785418 1785666 -17066147 + AluSg SINE Alu 1 247 -63 5372 52 8 0 chr4_random 1785666 1786324 -17065489 + L1PA5 LINE L1 5492 6154 0 13930 186 28 23 chr4_random 1786324 1787650 -17064163 + L1MA4A LINE L1 1764 3082 -3923 2579 36 7 3 chr4_random 1787650 1787959 -17063854 + AluY SINE Alu 1 310 -1 13930 186 28 23 chr4_random 1787959 1790480 -17061333 + L1MA4A LINE L1 3082 5588 -1417 2322 107 0 0 chr4_random 1790480 1790788 -17061025 + AluSc SINE Alu 1 308 -1 13930 186 28 23 chr4_random 1790788 1790915 -17060898 + L1MA4A LINE L1 5588 5713 -1292 2222 128 3 0 chr4_random 1790915 1791220 -17060593 + AluSp SINE Alu 1 306 -7 13930 186 28 23 chr4_random 1791220 1792425 -17059388 + L1MA4A LINE L1 5713 7003 -2 195 349 0 0 chr4_random 1792863 1792926 -17058887 - MIR3 SINE MIR -7 201 139 383 320 107 39 chr4_random 1793209 1793565 -17058248 - L3 LINE CR1 -21 1556 1177 308 356 64 40 chr4_random 1793653 1793979 -17057834 - L3 LINE CR1 -707 870 537 296 314 12 0 chr4_random 1794017 1794103 -17057710 - L2 LINE L2 -8 3264 3178 1822 138 59 0 chr4_random 1794122 1794412 -17057401 - AluSg SINE Alu -3 307 1 1961 143 29 13 chr4_random 1795546 1795853 -17055960 + AluSq SINE Alu 1 312 -1 589 241 15 8 chr4_random 1795938 1796071 -17055742 + MLT1E LTR MaLR 1 134 -459 1025 302 23 35 chr4_random 1796103 1796447 -17055366 + MLT1E LTR MaLR 120 459 -134 410 216 3 15 chr4_random 1797297 1797396 -17054417 + MLT1A1 LTR MaLR 259 459 -8 * 1191 186 28 13 chr4_random 1797394 1797692 -17054121 - MER61B LTR ERV1 -29 396 1 253 358 0 0 chr4_random 1797768 1797849 -17053964 + L2 LINE L2 3138 3218 -54 599 225 33 0 chr4_random 1798387 1798507 -17053306 + MER5C DNA MER1_type 1 124 -200 405 180 0 22 chr4_random 1798535 1798624 -17053189 + MER5C DNA MER1_type 234 320 -4 2202 100 33 0 chr4_random 1799348 1799647 -17052166 + AluSc SINE Alu 1 309 0 21 36 0 0 chr4_random 1800175 1800203 -17051610 + AT_rich Low_complexity Low_complexity 1 28 0 3376 110 60 116 chr4_random 1803241 1804729 -17047084 - pTR5 LTR ERV1 0 2438 741 528 137 21 0 chr4_random 1806485 1806580 -17045233 + L1MA9 LINE L1 6212 6308 -4 285 253 6 121 chr4_random 1806614 1806796 -17045017 + L2 LINE L2 3104 3264 -49 274 114 0 0 chr4_random 1807981 1808025 -17043788 - Charlie5 DNA MER1_type -49 2563 2520 1714 67 0 9 chr4_random 1808138 1808363 -17043450 - L1PA8 LINE L1 0 6172 5950 2151 206 73 17 chr4_random 1808483 1808960 -17042853 + MLT1D LTR MaLR 1 504 -1 4509 122 16 14 chr4_random 1809013 1809703 -17042110 - LTR8 LTR ERV1 0 691 1 2199 116 0 0 chr4_random 1810834 1811126 -17040687 + AluSg SINE Alu 1 292 -18 213 219 0 0 chr4_random 1811353 1811394 -17040419 + CT-rich Low_complexity Low_complexity 2 42 0 394 307 55 61 chr4_random 1811729 1811848 -17039965 - L1M4 LINE L1 -3139 3007 2889 1953 111 6 67 chr4_random 1811848 1812024 -17039789 - AluSx SINE Alu -15 297 147 1961 88 0 11 chr4_random 1812024 1812287 -17039526 - AluSg1 SINE Alu -11 298 39 1953 111 6 67 chr4_random 1812287 1812426 -17039387 - AluSx SINE Alu -165 147 1 394 307 55 61 chr4_random 1812426 1812623 -17039190 - L1M4 LINE L1 -3257 2889 2649 23 68 0 0 chr4_random 1812623 1812667 -17039146 + AT_rich Low_complexity Low_complexity 1 44 0 394 307 55 61 chr4_random 1812667 1812821 -17038992 - L1M4 LINE L1 -3497 2649 2496 261 322 175 18 chr4_random 1813270 1813441 -17038372 + MIR SINE MIR 65 262 0 2222 114 0 3 chr4_random 1815100 1815398 -17036415 - AluSx SINE Alu -15 297 1 205 363 150 22 chr4_random 1815504 1815865 -17035948 + L2 LINE L2 2400 2806 -508 204 333 14 43 chr4_random 1816384 1816525 -17035288 + MIR SINE MIR 64 200 -62 26 50 0 0 chr4_random 1816872 1816912 -17034901 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4_random 1817034 1817055 -17034758 + AT_rich Low_complexity Low_complexity 1 21 0 1962 162 0 0 chr4_random 1817184 1817480 -17034333 + AluSx SINE Alu 1 296 -16 26 30 0 0 chr4_random 1817749 1817782 -17034031 + AT_rich Low_complexity Low_complexity 1 33 0 512 359 42 64 chr4_random 1817985 1818409 -17033404 + L2 LINE L2 2857 3271 -1 2932 200 43 46 chr4_random 1819822 1820285 -17031528 - MER72 LTR ERV1 0 722 260 2356 95 3 13 chr4_random 1820285 1820601 -17031212 + AluSq SINE Alu 1 313 0 2932 200 43 46 chr4_random 1820601 1820861 -17030952 - MER72 LTR ERV1 -462 260 1 332 333 144 52 chr4_random 1820891 1821951 -17029862 + L2 LINE L2 2125 3266 -6 572 312 64 4 chr4_random 1822024 1822258 -17029555 - ERVL LTR ERVL -3379 2385 2138 426 269 145 21 chr4_random 1823934 1824120 -17027693 + MER63A DNA MER1_type 1 209 -1 2336 67 3 0 chr4_random 1824438 1824742 -17027071 - AluY SINE Alu 0 305 1 267 31 0 0 chr4_random 1824744 1824776 -17027037 + (T)n Simple_repeat Simple_repeat 1 32 0 181 351 80 37 chr4_random 1825593 1825781 -17026032 - L2 LINE L2 -1421 1893 1698 1768 155 48 21 chr4_random 1827704 1828039 -17023774 + MER2 DNA MER2_type 1 344 0 1968 126 7 3 chr4_random 1828414 1828699 -17023114 + AluSq SINE Alu 7 292 -21 25 31 0 0 chr4_random 1829003 1829035 -17022778 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4_random 1829557 1829578 -17022235 + AT_rich Low_complexity Low_complexity 1 21 0 1977 166 0 0 chr4_random 1830418 1830713 -17021100 - AluSx SINE Alu -17 295 1 771 209 0 47 chr4_random 1830828 1831000 -17020813 - FRAM SINE Alu -11 165 2 1858 189 3 0 chr4_random 1831056 1831363 -17020450 + AluJb SINE Alu 1 308 -4 523 344 96 0 chr4_random 1832075 1832305 -17019508 - MIR SINE MIR 0 262 11 1848 156 72 102 chr4_random 1833475 1833588 -17018225 + MLT2B1 LTR ERVL 6 121 -399 1858 167 26 3 chr4_random 1833588 1833893 -17017920 + AluSx SINE Alu 1 312 0 1848 156 72 102 chr4_random 1833893 1834267 -17017546 + MLT2B1 LTR ERVL 121 478 -42 225 65 0 0 chr4_random 1834289 1834320 -17017493 + (TG)n Simple_repeat Simple_repeat 2 32 0 307 42 62 0 chr4_random 1834379 1834427 -17017386 - MADE1 DNA Mariner -29 51 1 293 128 0 0 chr4_random 1834464 1834511 -17017302 + MLT2B1 LTR ERVL 467 513 -7 2161 95 13 41 chr4_random 1834988 1835303 -17016510 + AluSg SINE Alu 1 306 -4 202 389 42 42 chr4_random 1835484 1835628 -17016185 - MIR3 SINE MIR -7 201 58 2884 167 57 64 chr4_random 1836738 1837437 -17014376 + LTR8A LTR ERV1 34 727 0 1199 285 56 32 chr4_random 1837604 1837854 -17013959 - L1MC4a LINE L1 -1880 5928 5686 3234 126 17 62 chr4_random 1837854 1838313 -17013500 + MER41C LTR ERV1 1 430 -124 1944 122 25 7 chr4_random 1838313 1838622 -17013191 - AluSx SINE Alu 0 312 1 3234 126 17 62 chr4_random 1838622 1838742 -17013071 + MER41C LTR ERV1 430 554 0 1199 285 56 32 chr4_random 1838742 1839150 -17012663 - L1MC4a LINE L1 -2122 5686 5254 2075 163 140 30 chr4_random 1839245 1839772 -17012041 - MER34C LTR ERV1 0 585 1 2241 201 94 67 chr4_random 1839793 1840461 -17011352 - LTR8 LTR ERV1 0 691 6 2790 154 19 15 chr4_random 1840779 1841313 -17010500 + MER34C LTR ERV1 37 572 -13 1871 145 91 19 chr4_random 1841351 1841771 -17010042 - LTR7 LTR ERV1 0 450 1 207 167 0 0 chr4_random 1841818 1841860 -17009953 + (TG)n Simple_repeat Simple_repeat 1 42 0 196 406 17 11 chr4_random 1843457 1843632 -17008181 + L2 LINE L2 2728 2903 -411 317 291 86 26 chr4_random 1844097 1844214 -17007599 + L2 LINE L2 2928 3051 -221 9797 199 23 23 chr4_random 1844409 1845883 -17005930 - L1 LINE L1 -1467 4883 3411 2342 92 7 10 chr4_random 1845883 1846188 -17005625 + AluSc SINE Alu 1 304 -5 5305 128 15 25 chr4_random 1846195 1847029 -17004784 + L1PA15 LINE L1 4644 5472 -693 2388 100 3 0 chr4_random 1847029 1847339 -17004474 + AluY SINE Alu 1 311 0 5305 128 15 25 chr4_random 1847339 1848020 -17003793 + L1PA15 LINE L1 5472 6158 -7 9797 199 23 23 chr4_random 1848020 1849066 -17002747 - L1 LINE L1 -2944 3406 2354 1706 243 7 51 chr4_random 1849168 1849621 -17002192 - HERVL74 LTR ERVL -2421 3264 2832 2598 149 17 7 chr4_random 1849621 1850043 -17001770 + MSTB LTR MaLR 1 426 0 7865 189 65 10 chr4_random 1850043 1851609 -17000204 + MSTB-int LTR MaLR 1 1651 0 2189 141 74 22 chr4_random 1851609 1852014 -16999799 + MSTB LTR MaLR 1 426 0 6691 199 80 40 chr4_random 1852014 1852426 -16999387 - HERVL74 LTR ERVL -2849 2836 2442 2582 61 0 6 chr4_random 1852426 1852737 -16999076 - AluSc SINE Alu 0 309 1 6691 199 80 40 chr4_random 1852737 1852859 -16998954 - HERVL74 LTR ERVL -3243 2442 2326 1994 158 0 0 chr4_random 1852859 1853156 -16998657 - AluSx SINE Alu -10 302 6 6691 199 80 40 chr4_random 1853156 1854348 -16997465 - HERVL74 LTR ERVL -3359 2326 1041 1188 240 58 28 chr4_random 1855197 1855682 -16996131 + MER54B LTR ERVL 86 780 -13 1549 223 47 31 chr4_random 1855857 1856789 -16995024 - L1 LINE L1 -4174 2177 1265 1004 133 7 0 chr4_random 1856912 1857055 -16994758 - AluSq/x SINE Alu -169 144 1 1346 334 13 33 chr4_random 1857055 1857692 -16994121 - L1 LINE L1 -5029 1252 629 237 316 66 0 chr4_random 1857733 1857809 -16994004 - L1 LINE L1 -5573 708 628 2837 264 21 19 chr4_random 1857910 1858665 -16993148 - L1 LINE L1 -5520 761 5 232 158 74 7 chr4_random 1859102 1859404 -16992409 + (TA)n Simple_repeat Simple_repeat 1 322 0 24 0 0 0 chr4_random 1860973 1860997 -16990816 + AT_rich Low_complexity Low_complexity 1 24 0 784 160 51 6 chr4_random 1861217 1861373 -16990440 + L1M2 LINE L1 5631 5793 -498 22 35 0 0 chr4_random 2061405 2061434 -16790379 + AT_rich Low_complexity Low_complexity 1 29 0 2160 242 105 40 chr4_random 2061559 2062519 -16789294 + L1ME2 LINE L1 5114 6129 -35 183 310 98 71 chr4_random 2062993 2063177 -16788636 + MIR3 SINE MIR 20 208 0 267 152 0 0 chr4_random 2063790 2063836 -16787977 + (TG)n Simple_repeat Simple_repeat 2 47 0 327 175 0 16 chr4_random 2064270 2064333 -16787480 + L2 LINE L2 3210 3271 -1 189 74 0 0 chr4_random 2065871 2065898 -16785915 + (CA)n Simple_repeat Simple_repeat 2 28 0 1540 167 0 16 chr4_random 2067144 2067402 -16784411 - AluSx SINE Alu -22 290 37 29 0 0 0 chr4_random 2068996 2069025 -16782788 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4_random 2069999 2070020 -16781793 + AT_rich Low_complexity Low_complexity 1 21 0 201 340 72 36 chr4_random 2070440 2070634 -16781179 - L2 LINE L2 -1227 2087 1887 29 28 0 0 chr4_random 2071118 2071154 -16780659 + AT_rich Low_complexity Low_complexity 1 36 0 926 145 44 0 chr4_random 2071280 2071439 -16780374 + MER2 DNA MER2_type 45 210 -135 339 226 0 0 chr4_random 2071481 2071543 -16780270 + MER2 DNA MER2_type 284 345 0 180 77 0 0 chr4_random 2071706 2071732 -16780081 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 450 325 148 48 chr4_random 2072809 2073375 -16778438 + L2 LINE L2 2007 2629 -685 233 254 0 0 chr4_random 2073929 2073992 -16777821 - L1MC4 LINE L1 -1334 6708 6646 2444 47 0 0 chr4_random 2074004 2074303 -16777510 - AluY SINE Alu -12 299 1 243 0 0 0 chr4_random 2074309 2074336 -16777477 + (T)n Simple_repeat Simple_repeat 1 27 0 492 48 0 0 chr4_random 2074934 2074997 -16776816 + (TG)n Simple_repeat Simple_repeat 2 64 0 24 0 0 0 chr4_random 2075769 2075793 -16776020 + AT_rich Low_complexity Low_complexity 1 24 0 181 244 12 81 chr4_random 2077999 2078085 -16773728 + L3 LINE CR1 426 505 -1072 576 210 19 6 chr4_random 2078301 2078458 -16773355 + CT-rich Low_complexity Low_complexity 1 159 0 1937 150 0 0 chr4_random 2078458 2078731 -16773082 - AluSx SINE Alu -39 273 1 310 182 182 13 chr4_random 2078757 2078834 -16772979 + FLAM_A SINE Alu 31 120 -13 218 276 69 11 chr4_random 2078866 2078953 -16772860 + L2 LINE L2 2715 2806 -508 755 87 0 24 chr4_random 2078956 2079083 -16772730 + AluY SINE Alu 188 311 0 774 304 87 27 chr4_random 2079183 2079597 -16772216 + L2 LINE L2 2874 3312 -1 388 291 89 20 chr4_random 2080693 2080896 -16770917 + MIR SINE MIR 16 232 -30 585 167 17 223 chr4_random 2082754 2083160 -16768653 - L1MD3 LINE L1 -3 8039 7729 2246 90 17 0 chr4_random 2084077 2084367 -16767446 - AluSx SINE Alu -17 295 1 1807 313 94 28 chr4_random 2087836 2089029 -16762784 - L2 LINE L2 0 3313 2034 3331 154 10 18 chr4_random 2089029 2089626 -16762187 - L1PA16 LINE L1 -5 6161 5570 1409 146 32 8 chr4_random 2089735 2089981 -16761832 - Tigger2a DNA MER2_type -182 252 1 230 252 213 24 chr4_random 2090366 2090493 -16761320 - L2 LINE L2 -2 3311 3161 411 317 108 51 chr4_random 2091659 2092406 -16759407 - L2 LINE L2 -910 2404 1615 333 0 0 0 chr4_random 2094514 2094551 -16757262 + (TG)n Simple_repeat Simple_repeat 2 38 0 736 217 49 69 chr4_random 2094851 2095159 -16756654 + L1M4 LINE L1 2843 3148 -2998 369 43 0 0 chr4_random 2095344 2095391 -16756422 + (CA)n Simple_repeat Simple_repeat 2 48 0 180 367 0 0 chr4_random 2097113 2097162 -16754651 - L2 LINE L2 -22 3250 3202 288 53 0 0 chr4_random 2097413 2097451 -16754362 + (TG)n Simple_repeat Simple_repeat 2 39 0 470 253 27 103 chr4_random 2098006 2098173 -16753640 - MIR SINE MIR -64 144 9 242 287 114 60 chr4_random 2099900 2100067 -16751746 - L2 LINE L2 -20 3293 3118 328 321 54 103 chr4_random 2100661 2101106 -16750707 - L2 LINE L2 0 3272 2850 207 188 29 14 chr4_random 2101608 2101677 -16750136 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 243 0 0 0 chr4_random 2102970 2102997 -16748816 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 68 0 0 chr4_random 2103668 2103712 -16748101 + AT_rich Low_complexity Low_complexity 1 44 0 1610 167 11 7 chr4_random 2104341 2104616 -16747197 + AluJo SINE Alu 3 278 -34 211 269 56 56 chr4_random 2107644 2107752 -16744061 - L2 LINE L2 -460 2854 2747 4857 91 29 12 chr4_random 2108704 2109433 -16742380 - L1PA13 LINE L1 0 6163 5423 23 68 0 0 chr4_random 2113160 2113204 -16738609 + AT_rich Low_complexity Low_complexity 1 44 0 24 67 0 0 chr4_random 2114467 2114512 -16737301 + AT_rich Low_complexity Low_complexity 1 45 0 761 269 53 5 chr4_random 2114641 2114849 -16736964 + MIR SINE MIR 32 249 -13 21 0 0 0 chr4_random 2116025 2116046 -16735767 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr4_random 2117643 2117679 -16734134 + AT_rich Low_complexity Low_complexity 1 36 0 193 371 103 4 chr4_random 2118226 2118479 -16733334 + L2 LINE L2 1842 2119 -1195 288 306 83 9 chr4_random 2118584 2118692 -16733121 + L2 LINE L2 3196 3311 -2 200 222 0 0 chr4_random 2120151 2120196 -16731617 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 261 200 0 0 chr4_random 2120260 2120310 -16731503 - MER20B DNA MER1_type -32 751 702 21 0 0 0 chr4_random 2120339 2120360 -16731453 + AT_rich Low_complexity Low_complexity 1 21 0 495 291 81 31 chr4_random 2120366 2120627 -16731186 - MER20B DNA MER1_type -192 591 318 455 355 12 33 chr4_random 2121154 2121399 -16730414 + MIR SINE MIR 11 250 -12 1131 58 7 2 chr4_random 2121439 2121603 -16730210 + L1PA5 LINE L1 5988 6149 -6 233 356 0 23 chr4_random 2121894 2121981 -16729832 - L2 LINE L2 0 3313 3229 684 206 7 14 chr4_random 2123127 2123294 -16728519 + FRAM SINE Alu 4 169 0 28 29 0 0 chr4_random 2123546 2123581 -16728232 + AT_rich Low_complexity Low_complexity 1 35 0 288 303 112 39 chr4_random 2124472 2124650 -16727163 - MIR SINE MIR 0 262 72 2019 146 7 3 chr4_random 2127247 2127556 -16724257 - AluSx SINE Alu 0 312 3 29 47 0 0 chr4_random 2127562 2127605 -16724208 + AT_rich Low_complexity Low_complexity 1 43 0 322 183 33 0 chr4_random 2127845 2127905 -16723908 - L2 LINE L2 -1012 2302 2241 233 336 34 17 chr4_random 2128157 2128276 -16723537 + MIR SINE MIR 44 164 -98 387 280 54 38 chr4_random 2128710 2128896 -16722917 + MIR SINE MIR 37 225 -37 209 304 76 0 chr4_random 2129057 2129136 -16722677 + L2 LINE L2 3188 3272 0 1369 191 78 19 chr4_random 2129221 2129540 -16722273 - MER58B DNA MER1_type -3 338 1 1127 207 58 4 chr4_random 2129765 2130007 -16721806 + L1PA16 LINE L1 5899 6153 -13 356 301 71 0 chr4_random 2130017 2130140 -16721673 + MIR SINE MIR 50 181 -64 2900 91 2 0 chr4_random 2130283 2130681 -16721132 - L1PA13 LINE L1 -19 6144 5746 1020 175 69 41 chr4_random 2130828 2131009 -16720804 - MER33 DNA MER1_type -2261 324 131 2102 119 3 3 chr4_random 2131009 2131312 -16720501 - AluSx SINE Alu -9 303 1 1020 175 69 41 chr4_random 2131312 2131421 -16720392 - MER33 DNA MER1_type -2454 131 26 271 278 98 0 chr4_random 2132358 2132491 -16719322 + MIR SINE MIR 57 202 -60 436 213 21 13 chr4_random 2132506 2132618 -16719195 + L1ME3A LINE L1 6059 6164 0 2167 121 48 3 chr4_random 2132726 2133081 -16718732 - L1PA13 LINE L1 -2 6161 5791 2942 172 20 4 chr4_random 2133081 2133640 -16718173 - L1P LINE L1 -2353 3793 3226 23 54 0 0 chr4_random 2133645 2133682 -16718131 + AT_rich Low_complexity Low_complexity 1 37 0 2306 225 84 37 chr4_random 2133763 2134602 -16717211 + L1ME2 LINE L1 5205 6086 -78 747 310 26 9 chr4_random 2135576 2135805 -16716008 - MIR SINE MIR -6 256 24 340 265 94 53 chr4_random 2137521 2137691 -16714122 - L3 LINE CR1 -32 1545 1369 231 191 0 0 chr4_random 2137691 2137738 -16714075 + L1 LINE L1 4279 4325 -1821 398 244 109 29 chr4_random 2139132 2139356 -16712457 + MER46C DNA MER2_type 5 281 -57 1632 242 119 45 chr4_random 2139371 2139883 -16711930 - MLT2B3 LTR ERVL -4 550 1 213 325 135 28 chr4_random 2141884 2142173 -16709640 + L2 LINE L2 2550 2869 -445 186 403 0 13 chr4_random 2142749 2142826 -16708987 + L2 LINE L2 3111 3186 -86 2316 108 0 0 chr4_random 2144443 2144748 -16707065 - AluSx SINE Alu -7 305 1 278 364 121 15 chr4_random 2145273 2145471 -16706342 + L2 LINE L2 3005 3223 -90 288 359 29 39 chr4_random 2145548 2145829 -16705984 - L2 LINE L2 -153 3160 2883 965 330 158 42 chr4_random 2145880 2146100 -16705713 - L2 LINE L2 -574 2740 2547 3681 136 53 5 chr4_random 2146100 2146683 -16705130 - LTR9 LTR ERV1 -1 611 1 965 330 158 42 chr4_random 2146683 2148189 -16703624 - L2 LINE L2 -767 2547 814 209 45 0 91 chr4_random 2150984 2151028 -16700785 + (T)n Simple_repeat Simple_repeat 1 40 0 21 57 0 0 chr4_random 2151557 2151592 -16700221 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr4_random 2151623 2151658 -16700155 + AT_rich Low_complexity Low_complexity 1 35 0 2350 22 0 0 chr4_random 2151709 2151986 -16699827 + L1PA2 LINE L1 5879 6155 0 33 56 0 0 chr4_random 2151986 2152040 -16699773 + AT_rich Low_complexity Low_complexity 1 54 0 411 292 101 29 chr4_random 2152281 2152490 -16699323 + MIR SINE MIR 8 231 -31 248 275 82 126 chr4_random 2152692 2152899 -16698914 + MIR SINE MIR 1 198 -64 2401 146 49 7 chr4_random 2153538 2153949 -16697864 - MSTA LTR MaLR 0 428 1 334 216 63 71 chr4_random 2154174 2154287 -16697526 - L1MB4 LINE L1 0 6178 6069 242 215 177 0 chr4_random 2154566 2154645 -16697168 - L2 LINE L2 0 3313 3221 2222 192 19 2 chr4_random 2154806 2155217 -16696596 - MER47B DNA MER2_type 0 418 1 22 35 0 0 chr4_random 2156723 2156752 -16695061 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr4_random 2157431 2157461 -16694352 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr4_random 2157761 2157790 -16694023 + AT_rich Low_complexity Low_complexity 1 29 0 231 88 0 0 chr4_random 2159466 2159500 -16692313 + (A)n Simple_repeat Simple_repeat 1 34 0 1014 274 32 23 chr4_random 2159902 2160212 -16691601 - MER87 LTR ERV1 0 541 229 1969 73 8 0 chr4_random 2160217 2160477 -16691336 - L1PA6 LINE L1 0 6154 5893 28 29 0 0 chr4_random 2160809 2160844 -16690969 + AT_rich Low_complexity Low_complexity 1 35 0 201 293 71 43 chr4_random 2160958 2161024 -16690789 + MIR SINE MIR 117 180 -82 285 51 0 0 chr4_random 2161024 2161063 -16690750 + (CA)n Simple_repeat Simple_repeat 2 40 0 201 293 71 43 chr4_random 2161063 2161136 -16690677 + MIR SINE MIR 180 260 -2 1077 210 39 0 chr4_random 2161204 2161437 -16690376 + L1M1 LINE L1 18 259 -7306 5574 132 72 2 chr4_random 2161455 2162612 -16689201 + L1MA2 LINE L1 5068 6303 -1 1969 161 46 49 chr4_random 2162700 2163090 -16688723 + MLT1B LTR MaLR 2 390 0 1070 274 82 22 chr4_random 2163644 2164204 -16687609 + L2 LINE L2 1719 2387 -927 395 267 105 0 chr4_random 2164212 2164317 -16687496 - MIR SINE MIR -138 124 9 259 281 149 25 chr4_random 2164322 2164443 -16687370 + L2 LINE L2 2595 2730 -584 28 0 0 0 chr4_random 2164512 2164540 -16687273 + AT_rich Low_complexity Low_complexity 1 28 0 829 276 116 42 chr4_random 2164585 2165017 -16686796 + L2 LINE L2 2850 3313 0 192 97 0 0 chr4_random 2165079 2165110 -16686703 + (CAAAAA)n Simple_repeat Simple_repeat 4 34 0 337 294 99 40 chr4_random 2165826 2166584 -16685229 + L1ME LINE L1 812 1608 -4607 479 276 89 10 chr4_random 2166849 2167276 -16684537 + L1ME LINE L1 2036 2459 -3756 2258 117 0 0 chr4_random 2167824 2168133 -16683680 + AluSx SINE Alu 1 309 -3 510 263 11 26 chr4_random 2170165 2170355 -16681458 + L1ME2 LINE L1 5959 6145 -19 1505 112 5 0 chr4_random 2170384 2170589 -16681224 + AluSg1 SINE Alu 1 206 -103 1742 77 0 20 chr4_random 2170757 2171004 -16680809 - AluY SINE Alu -69 242 1 684 286 128 65 chr4_random 2171698 2172111 -16679702 + Charlie7 DNA MER1_type 59 497 -2115 186 43 0 0 chr4_random 2172170 2172193 -16679620 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1835 100 85 0 chr4_random 2172199 2172469 -16679344 - AluSg SINE Alu -17 293 1 418 272 99 30 chr4_random 2172485 2172687 -16679126 + Charlie7 DNA MER1_type 533 748 -1864 823 277 149 9 chr4_random 2172887 2173237 -16678576 + Charlie7 DNA MER1_type 999 1397 -1215 996 186 7 103 chr4_random 2174515 2174734 -16677079 + L1 LINE L1 4595 4781 -1365 3916 135 54 26 chr4_random 2174734 2175452 -16676361 + L1PA16 LINE L1 5419 6157 -9 996 186 7 103 chr4_random 2175452 2175522 -16676291 + L1 LINE L1 4781 4856 -1290 312 314 59 8 chr4_random 2175779 2175897 -16675916 + MIR SINE MIR 34 157 -105 1464 186 17 34 chr4_random 2177200 2177491 -16674322 + AluJo SINE Alu 1 286 -26 279 353 37 15 chr4_random 2177618 2177754 -16674059 + MIR SINE MIR 1 139 -123 22 0 0 0 chr4_random 2177829 2177851 -16673962 + AT_rich Low_complexity Low_complexity 1 22 0 5138 170 28 23 chr4_random 2177861 2179207 -16672606 - L1MA7 LINE L1 -21 6270 4915 526 275 103 44 chr4_random 2179257 2179577 -16672236 + L2 LINE L2 1699 2037 -1277 234 371 8 23 chr4_random 2179613 2179745 -16672068 + L2 LINE L2 2134 2263 -1051 210 156 0 0 chr4_random 2179745 2179777 -16672036 + polypyrimidine Low_complexity Low_complexity 1 32 0 531 158 24 16 chr4_random 2179778 2179905 -16671908 + CT-rich Low_complexity Low_complexity 3 130 0 498 254 48 79 chr4_random 2179905 2180094 -16671719 - FAM SINE Alu -2 47 1 2197 128 0 0 chr4_random 2180550 2180854 -16670959 + AluSx SINE Alu 4 307 -5 6055 101 3 16 chr4_random 2181501 2182557 -16669256 - L1PA14 LINE L1 -1 6160 5099 3447 194 29 14 chr4_random 2182568 2183326 -16668487 + L1P LINE L1 3863 4631 -1515 720 338 42 50 chr4_random 2186579 2186979 -16664834 + L3 LINE CR1 1120 1516 -61 506 274 86 94 chr4_random 2187262 2188028 -16663785 + L1ME3A LINE L1 4389 5148 -998 436 222 10 0 chr4_random 2188043 2188142 -16663671 + L1ME3A LINE L1 5477 5576 -586 435 302 79 0 chr4_random 2188148 2188337 -16663476 + L1ME3A LINE L1 5628 5831 -339 8479 202 39 5 chr4_random 2188339 2191033 -16660780 + L1PA13 LINE L1 3382 6174 0 21 36 0 0 chr4_random 2191068 2191096 -16660717 + AT_rich Low_complexity Low_complexity 1 28 0 804 222 144 4 chr4_random 2191314 2191682 -16660131 + MER31B LTR ERV1 1 466 0 2399 86 0 0 chr4_random 2191721 2192023 -16659790 + AluSx SINE Alu 1 302 -10 2213 99 3 0 chr4_random 2192548 2192840 -16658973 - AluSc SINE Alu -16 293 1 180 0 0 0 chr4_random 2192872 2192892 -16658921 + (A)n Simple_repeat Simple_repeat 1 20 0 621 293 26 8 chr4_random 2193375 2193641 -16658172 + HAL1b LINE L1 375 645 -703 311 333 55 71 chr4_random 2194222 2194772 -16657041 + L1M4 LINE L1 2277 2817 -3329 581 315 65 65 chr4_random 2194811 2195509 -16656304 + L1M4 LINE L1 2963 3660 -2486 304 301 8 32 chr4_random 2195534 2195657 -16656156 + L1M4 LINE L1 3717 3836 -2310 425 274 60 0 chr4_random 2195754 2195871 -16655942 + MER45A DNA AcHobo 2 125 -53 311 261 0 0 chr4_random 2195909 2195974 -16655839 + MIR SINE MIR 55 119 -143 282 329 62 19 chr4_random 2196142 2196303 -16655510 - L2 LINE L2 -184 3088 2921 788 254 75 26 chr4_random 2196333 2196561 -16655252 + MIR SINE MIR 8 246 -16 183 213 21 21 chr4_random 2197201 2197248 -16654565 - L2 LINE L2 -3 3310 3264 23 54 0 0 chr4_random 2198861 2198898 -16652915 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr4_random 2199017 2199057 -16652756 + AT_rich Low_complexity Low_complexity 1 40 0 409 35 17 0 chr4_random 2199727 2199785 -16652028 + L1PA3 LINE L1 5847 5905 -250 214 360 166 32 chr4_random 2200969 2201408 -16650405 + L2 LINE L2 312 809 -2505 1774 198 24 0 chr4_random 2201511 2201845 -16649968 + MER7A DNA MER2_type 2 341 -5 2068 194 41 2 chr4_random 2201966 2202378 -16649435 - MSTA LTR MaLR 0 428 1 302 376 101 16 chr4_random 2202590 2202966 -16648847 + L2 LINE L2 2323 2754 -560 2151 177 44 118 chr4_random 2202966 2203286 -16648527 + MER44D DNA MER2_type 1 313 -2174 1883 140 0 0 chr4_random 2203286 2203557 -16648256 - AluSq SINE Alu -38 275 5 2151 177 44 118 chr4_random 2203557 2203829 -16647984 + MER44D DNA MER2_type 313 604 -1 302 376 101 16 chr4_random 2203829 2203957 -16647856 + L2 LINE L2 2754 2870 -444 216 398 29 10 chr4_random 2204225 2204328 -16647485 + L2 LINE L2 3121 3225 -47 742 331 71 10 chr4_random 2204746 2205057 -16646756 - MLT1J LTR MaLR -173 338 9 902 301 79 43 chr4_random 2205850 2206431 -16645382 + L2 LINE L2 2717 3313 0 272 348 70 32 chr4_random 2207451 2207882 -16643931 - L1ME3A LINE L1 -231 5939 5493 1019 285 61 37 chr4_random 2207890 2208360 -16643453 + MLT1H LTR MaLR 11 533 -16 268 295 76 9 chr4_random 2208528 2208633 -16643180 - MLT1L LTR MaLR -39 576 465 743 227 40 45 chr4_random 2208815 2209013 -16642800 - MLT1A2 LTR MaLR -177 197 1 268 295 120 21 chr4_random 2209057 2209291 -16642522 - L1ME3A LINE L1 -1797 4349 4093 1337 19 0 6 chr4_random 2209304 2209465 -16642348 + (TTTC)n Simple_repeat Simple_repeat 1 160 0 1532 168 29 7 chr4_random 2209465 2209739 -16642074 - AluJb SINE Alu -32 280 1 276 335 143 12 chr4_random 2210063 2210379 -16641434 + L2 LINE L2 1429 1846 -1468 213 224 55 24 chr4_random 2212896 2213061 -16638752 + (TA)n Simple_repeat Simple_repeat 1 170 0 4526 200 37 8 chr4_random 2213528 2215345 -16636468 - L1PA16 LINE L1 -1 6165 4297 314 227 13 0 chr4_random 2215347 2215422 -16636391 + AluJ/FRAM SINE Alu 227 302 0 823 228 70 109 chr4_random 2215536 2216022 -16635791 - MLT1C LTR MaLR 0 467 1 835 224 0 0 chr4_random 2216131 2216292 -16635521 - FRAM SINE Alu -14 162 2 24 85 0 0 chr4_random 2216304 2216363 -16635450 + AT_rich Low_complexity Low_complexity 1 59 0 30 45 0 0 chr4_random 2216507 2216551 -16635262 + AT_rich Low_complexity Low_complexity 1 44 0 326 349 96 0 chr4_random 2216662 2216808 -16635005 + MIR SINE MIR 11 170 -92 23 33 0 0 chr4_random 2217801 2217831 -16633982 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4_random 2219018 2219039 -16632774 + AT_rich Low_complexity Low_complexity 1 21 0 184 240 40 0 chr4_random 2219231 2219281 -16632532 + L2 LINE L2 3262 3313 0 1979 117 33 3 chr4_random 2219663 2219963 -16631850 - AluSx SINE Alu -2 310 2 497 302 134 47 chr4_random 2220071 2220628 -16631185 + L2 LINE L2 2710 3311 -2 2822 13 0 0 chr4_random 2220748 2221061 -16630752 + AluYb8 SINE Alu 1 313 -5 4465 199 49 3 chr4_random 2221368 2222229 -16629584 - MER54A LTR ERVL -1 900 1 747 184 73 17 chr4_random 2223924 2224103 -16627710 - MER5A DNA MER1_type 0 189 1 271 216 39 0 chr4_random 2224175 2224226 -16627587 - L2 LINE L2 -9 3263 3211 1903 168 85 15 chr4_random 2224348 2224748 -16627065 + MSTA LTR MaLR 1 428 0 213 108 0 0 chr4_random 2225104 2225141 -16626672 + (CA)n Simple_repeat Simple_repeat 1 37 0 199 383 133 6 chr4_random 2225142 2225322 -16626491 + L2 LINE L2 2954 3156 -116 279 54 0 0 chr4_random 2225811 2225848 -16625965 + (TTA)n Simple_repeat Simple_repeat 3 39 0 191 309 179 8 chr4_random 2226585 2226708 -16625105 - L2 LINE L2 -17 3255 3112 941 205 61 72 chr4_random 2226920 2227295 -16624518 + LTR37A LTR ERV1 56 426 0 2199 116 0 0 chr4_random 2227944 2228238 -16623575 + AluSx SINE Alu 2 295 -17 2124 112 0 0 chr4_random 2228859 2229146 -16622667 + AluSc SINE Alu 3 289 -20 360 0 0 0 chr4_random 2229251 2229291 -16622522 + (CA)n Simple_repeat Simple_repeat 2 41 0 2058 125 0 3 chr4_random 2230444 2230748 -16621065 - AluSx SINE Alu -9 303 1 384 94 0 0 chr4_random 2230840 2230893 -16620920 - Alu SINE Alu -249 53 1 267 31 0 0 chr4_random 2230926 2230958 -16620855 + (CA)n Simple_repeat Simple_repeat 2 33 0 281 333 51 51 chr4_random 2231137 2231353 -16620460 - MLT1K LTR MaLR 0 588 373 241 246 35 0 chr4_random 2231484 2231541 -16620272 - MLT1K LTR MaLR -383 205 147 221 245 0 0 chr4_random 2231783 2231832 -16619981 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 307 220 71 99 chr4_random 2231881 2232022 -16619791 + L1ME4a LINE L1 5983 6119 -2 361 318 9 0 chr4_random 2232216 2232326 -16619487 - MIR3 SINE MIR -3 205 95 207 0 0 0 chr4_random 2232338 2232361 -16619452 + (CAAAAA)n Simple_repeat Simple_repeat 4 26 0 710 131 29 29 chr4_random 2233923 2234098 -16617715 + GA-rich Low_complexity Low_complexity 2 176 0 297 178 30 50 chr4_random 2234131 2234232 -16617581 + GA-rich Low_complexity Low_complexity 2 100 0 328 239 114 80 chr4_random 2234572 2234748 -16617065 + MIR SINE MIR 81 262 0 927 293 87 14 chr4_random 2234809 2235222 -16616591 - LTR16C LTR ERVL -11 480 38 424 307 68 6 chr4_random 2235611 2235774 -16616039 + MIR SINE MIR 78 250 -12 197 261 77 54 chr4_random 2235898 2236028 -16615785 + MIR SINE MIR 21 153 -109 2161 182 11 0 chr4_random 2236650 2237008 -16614805 - MLT1A1 LTR MaLR -3 362 1 2502 116 16 8 chr4_random 2237342 2237714 -16614099 + THE1C LTR MaLR 1 375 0 1417 271 58 27 chr4_random 2237830 2238314 -16613499 + LTR53 LTR ERVL 21 519 0 978 211 81 29 chr4_random 2239153 2239461 -16612352 - MER33 DNA MER1_type 0 324 1 419 350 6 19 chr4_random 2239471 2239631 -16612182 + MIR SINE MIR 41 198 -64 1964 131 0 0 chr4_random 2239681 2240017 -16611796 + AluSx SINE Alu 1 336 0 211 182 0 0 chr4_random 2240103 2240136 -16611677 + polypyrimidine Low_complexity Low_complexity 2 34 0 404 265 44 0 chr4_random 2240379 2240515 -16611298 + MIR SINE MIR 82 223 -39 192 338 66 60 chr4_random 2240773 2240924 -16610889 - MIR3 SINE MIR -3 205 54 27 0 0 0 chr4_random 2241576 2241603 -16610210 + AT_rich Low_complexity Low_complexity 1 27 0 1157 278 86 14 chr4_random 2242177 2242879 -16608934 + L1MDa LINE L1 1045 1862 -4520 4069 240 22 19 chr4_random 2243537 2245096 -16606717 + L1PA15 LINE L1 1532 3124 -3673 3795 124 24 14 chr4_random 2245095 2245764 -16606049 + L1MA2 LINE L1 2358 3033 -4532 * 4893 113 55 22 chr4_random 2245752 2245819 -16605994 + L1MA2 LINE L1 6740 6803 -920 1794 199 0 0 chr4_random 2245819 2246130 -16605683 + AluJb SINE Alu 2 312 0 4893 113 55 22 chr4_random 2246130 2246914 -16604899 + L1MA2 LINE L1 6803 7619 -104 11183 215 30 6 chr4_random 2246925 2247681 -16604132 + L1PA15 LINE L1 3115 3851 -2965 297 0 0 0 chr4_random 2247681 2247714 -16604099 + (GA)n Simple_repeat Simple_repeat 2 34 0 11183 215 30 6 chr4_random 2247714 2250565 -16601248 + L1PA15 LINE L1 3851 6806 -10 25 31 0 0 chr4_random 2250767 2250799 -16601014 + AT_rich Low_complexity Low_complexity 1 32 0 5638 214 59 44 chr4_random 2250875 2251450 -16600363 + L1MB7 LINE L1 1897 2462 -3791 1828 127 7 27 chr4_random 2251450 2251750 -16600063 - AluSx SINE Alu -18 294 1 5638 214 59 44 chr4_random 2251750 2255162 -16596651 + L1MB7 LINE L1 2462 6125 -128 1715 36 27 32 chr4_random 2255166 2255386 -16596427 - AluY SINE Alu -15 296 78 582 53 0 0 chr4_random 2255386 2255461 -16596352 + Alu SINE Alu 2 76 -234 244 91 0 45 chr4_random 2255484 2255528 -16596285 + L1MB7 LINE L1 6195 6236 -17 2242 97 0 7 chr4_random 2255766 2256075 -16595738 - AluSq SINE Alu -6 307 1 22 0 0 0 chr4_random 2256269 2256291 -16595522 + AT_rich Low_complexity Low_complexity 1 22 0 1809 133 11 0 chr4_random 2257264 2257528 -16594285 + AluSx SINE Alu 36 302 -10 1886 157 0 26 chr4_random 2257807 2258119 -16593694 - AluSx SINE Alu -3 309 6 198 312 83 46 chr4_random 2260355 2260464 -16591349 - MIR SINE MIR -73 135 23 1913 104 10 21 chr4_random 2262446 2262735 -16589078 - AluSc SINE Alu -12 297 12 2074 88 10 17 chr4_random 2263252 2263546 -16588267 - AluSc SINE Alu -12 297 6 226 319 112 65 chr4_random 2263771 2263940 -16587873 - MER5B DNA MER1_type -1 177 1 843 126 8 0 chr4_random 2264028 2264147 -16587666 + FLAM_C SINE Alu 3 122 -21 210 379 52 0 chr4_random 2264529 2264645 -16587168 - L2 LINE L2 -21 3292 3171 405 265 45 30 chr4_random 2264803 2264899 -16586914 + MIR SINE MIR 108 208 -54 4145 40 0 0 chr4_random 2264899 2265403 -16586410 + L1PA4 LINE L1 5652 6155 0 405 265 45 30 chr4_random 2265403 2265438 -16586375 + MIR SINE MIR 208 241 -21 22 0 0 0 chr4_random 2265460 2265482 -16586331 + AT_rich Low_complexity Low_complexity 1 22 0 418 319 56 12 chr4_random 2265948 2266121 -16585692 + MIR SINE MIR 26 207 -55 411 98 0 0 chr4_random 2267433 2267494 -16584319 + (CA)n Simple_repeat Simple_repeat 2 62 0 5149 201 56 66 chr4_random 2267524 2268704 -16583109 - L1MC3 LINE L1 -6 8197 6988 283 109 0 0 chr4_random 2268704 2268750 -16583063 - MADE1 DNA Mariner -1 79 34 5149 201 56 66 chr4_random 2268750 2268984 -16582829 - L1MC3 LINE L1 -1215 6988 6753 3607 195 37 16 chr4_random 2268984 2269855 -16581958 - L1MC3 LINE L1 -745 5819 5559 4214 167 63 11 chr4_random 2269904 2270368 -16581445 + L1MC1 LINE L1 5384 5908 -425 7856 138 11 11 chr4_random 2270368 2271668 -16580145 - HSMAR2 DNA Mariner -2 1300 1 4214 167 63 11 chr4_random 2271668 2272001 -16579812 + L1MC1 LINE L1 5908 6222 -111 962 269 50 12 chr4_random 2272017 2272441 -16579372 - L1MC3 LINE L1 -2667 3897 3458 785 115 0 0 chr4_random 2272464 2272577 -16579236 - THE1C LTR MaLR -1 374 262 335 268 49 106 chr4_random 2272578 2272720 -16579093 + L1PA15 LINE L1 519 652 -6135 1844 148 60 23 chr4_random 2272750 2273101 -16578712 - THE1B LTR MaLR 0 364 1 1846 59 4 0 chr4_random 2273101 2273338 -16578475 - THE1B-int LTR MaLR 0 1580 1343 337 68 0 0 chr4_random 2273348 2273392 -16578421 - THE1C LTR MaLR -331 44 1 5299 233 41 42 chr4_random 2273481 2274935 -16576878 + L1PA15 LINE L1 1245 2703 -4094 2012 114 0 14 chr4_random 2274935 2275225 -16576588 + AluSc SINE Alu 2 287 -22 5299 233 41 42 chr4_random 2275225 2276305 -16575508 + L1PA15 LINE L1 2703 3782 -3015 4892 158 18 16 chr4_random 2276306 2277875 -16573938 + L1PA15 LINE L1 5058 6636 -180 2265 114 0 0 chr4_random 2277875 2278183 -16573630 - AluY SINE Alu -3 308 1 4892 158 18 16 chr4_random 2278183 2278357 -16573456 + L1PA15 LINE L1 6636 6808 -8 2531 251 67 106 chr4_random 2278395 2280012 -16571801 - L1MC3 LINE L1 -4851 1194 1 1488 181 54 43 chr4_random 2280347 2280718 -16571095 + THE1C LTR MaLR 1 375 0 2223 109 18 3 chr4_random 2280718 2281049 -16570764 + THE1C-int LTR MaLR 1 336 -1244 313 304 74 70 chr4_random 2282047 2282290 -16569523 - MIR SINE MIR -2 260 17 28 86 0 0 chr4_random 2282559 2282629 -16569184 + AT_rich Low_complexity Low_complexity 1 70 0 249 33 0 0 chr4_random 2283460 2283490 -16568323 + (TC)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr4_random 2283816 2283839 -16567974 + AT_rich Low_complexity Low_complexity 1 23 0 397 313 101 61 chr4_random 2284193 2284343 -16567470 - L3 LINE CR1 -5 1572 1430 1805 145 25 0 chr4_random 2284343 2284626 -16567187 - AluSx SINE Alu -22 290 1 397 313 101 61 chr4_random 2284626 2284764 -16567049 - L3 LINE CR1 -147 1430 1265 2384 64 0 0 chr4_random 2284764 2285061 -16566752 - AluY SINE Alu -14 297 1 397 313 101 61 chr4_random 2285061 2285116 -16566697 - L3 LINE CR1 -312 1265 1214 806 272 101 13 chr4_random 2286745 2287043 -16564770 - L1MC4 LINE L1 -156 7886 7563 1378 85 6 0 chr4_random 2287043 2287220 -16564593 - AluY SINE Alu -125 186 9 298 301 32 0 chr4_random 2287665 2287758 -16564055 + (CCCTAA)n Simple_repeat Simple_repeat 1 96 0 271 244 74 104 chr4_random 2288900 2289035 -16562778 + MIR3 SINE MIR 42 172 -36 1813 201 60 29 chr4_random 2289919 2290371 -16561442 - MLT1C LTR MaLR 0 467 2 191 267 35 81 chr4_random 2291990 2292076 -16559737 + MIR SINE MIR 110 191 -71 396 265 193 31 chr4_random 2293105 2293328 -16558485 + MER112 DNA MER1_type 1 259 -1 212 367 62 23 chr4_random 2293328 2293456 -16558357 - MIR SINE MIR -11 251 119 2731 42 0 0 chr4_random 2293456 2293786 -16558027 + L1PA4 LINE L1 5823 6152 -3 297 355 138 11 chr4_random 2294214 2294403 -16557410 + MIR SINE MIR 31 243 -19 554 327 143 0 chr4_random 2294775 2294992 -16556821 - MIR SINE MIR 0 262 15 313 339 42 18 chr4_random 2295583 2295751 -16556062 - MIR SINE MIR 0 262 91 251 231 0 0 chr4_random 2295794 2295846 -16555967 + MER116 DNA Mariner 3 54 -26 992 259 78 30 chr4_random 2297233 2297631 -16554182 + LTR40c LTR ERVL 1 417 -48 385 352 152 57 chr4_random 2297708 2298163 -16553650 - L3 LINE CR1 -26 1551 1054 273 308 13 0 chr4_random 2298239 2298317 -16553496 + L2 LINE L2 3194 3272 0 201 309 109 27 chr4_random 2298324 2298434 -16553379 - L3 LINE CR1 -521 1056 938 531 320 30 20 chr4_random 2298465 2298668 -16553145 + MIR SINE MIR 54 258 -4 690 355 74 19 chr4_random 2299567 2300029 -16551784 - L2 LINE L2 -4 3309 2823 587 124 62 0 chr4_random 2300088 2300201 -16551612 + L1MA7 LINE L1 6172 6291 0 833 342 112 32 chr4_random 2300374 2301088 -16550725 - L2 LINE L2 -620 2694 1924 361 377 40 11 chr4_random 2302574 2302749 -16549064 - MER5A DNA MER1_type 0 189 10 1559 191 89 50 chr4_random 2302905 2303345 -16548468 - MLT1C LTR MaLR 0 467 11 190 205 128 0 chr4_random 2303396 2303435 -16548378 + L2 LINE L2 3210 3253 -19 310 340 16 58 chr4_random 2303469 2303660 -16548153 + MER5A DNA MER1_type 1 183 -6 291 87 0 0 chr4_random 2305953 2305999 -16545814 - L1PA6 LINE L1 0 6154 6109 2511 202 63 16 chr4_random 2306635 2307307 -16544506 + Tigger7 DNA MER2_type 3 2586 -1 334 285 58 7 chr4_random 2307485 2307622 -16544191 + L1MEd LINE L1 68 211 -5908 297 0 0 0 chr4_random 2307769 2307802 -16544011 + (CA)n Simple_repeat Simple_repeat 2 34 0 2664 51 0 0 chr4_random 2307950 2308261 -16543552 + AluY SINE Alu 1 311 0 212 100 25 0 chr4_random 2309242 2309282 -16542531 + (TA)n Simple_repeat Simple_repeat 2 42 0 24 77 0 0 chr4_random 2309648 2309700 -16542113 + AT_rich Low_complexity Low_complexity 1 52 0 232 274 71 71 chr4_random 2310177 2310557 -16541256 - L1MC5 LINE L1 -44 7917 7538 310 291 51 23 chr4_random 2310560 2310735 -16541078 - L1MC5 LINE L1 -476 7485 7306 589 281 25 21 chr4_random 2310894 2311136 -16540677 - L1MC5 LINE L1 -745 7216 6974 2741 222 82 15 chr4_random 2311224 2312446 -16539367 - L1MCb LINE L1 -4597 1967 568 1530 269 45 31 chr4_random 2312552 2313103 -16538710 - L1MCb LINE L1 -5486 559 1 376 278 32 29 chr4_random 2313129 2313325 -16538488 - L1MC4 LINE L1 -889 6934 6730 256 305 54 84 chr4_random 2313508 2313747 -16538066 - L2 LINE L2 -124 3189 2958 28 71 0 0 chr4_random 2313975 2314031 -16537782 + AT_rich Low_complexity Low_complexity 1 56 0 239 206 44 15 chr4_random 2315055 2315123 -16536690 + MLT1H1 LTR MaLR 2 71 -484 297 203 16 0 chr4_random 2315246 2315310 -16536503 - AluJ/FLAM SINE Alu -237 65 1 668 251 112 60 chr4_random 2315496 2315747 -16536066 + MLT1H1 LTR MaLR 292 555 0 193 274 68 82 chr4_random 2316798 2316944 -16534869 - MIR SINE MIR -46 216 73 1326 220 95 35 chr4_random 2318779 2319210 -16532603 - MSTB2 LTR MaLR 0 457 1 21 0 0 0 chr4_random 2320166 2320187 -16531626 + AT_rich Low_complexity Low_complexity 1 21 0 580 264 67 36 chr4_random 2321488 2321681 -16530132 - MIR SINE MIR -12 250 52 2134 132 73 15 chr4_random 2321683 2322024 -16529789 - THE1B LTR MaLR -3 361 1 10735 117 14 3 chr4_random 2322024 2323586 -16528227 - THE1B-int LTR MaLR 0 1580 1 2004 133 109 15 chr4_random 2323589 2323919 -16527894 - THE1B LTR MaLR -3 361 1 279 302 108 41 chr4_random 2324173 2324339 -16527474 - MIR SINE MIR -43 219 34 914 257 99 7 chr4_random 2324397 2324501 -16527312 + MLT2D LTR ERVL 84 177 -237 201 39 0 0 chr4_random 2324501 2324527 -16527286 + (CAA)n Simple_repeat Simple_repeat 2 27 0 914 257 99 7 chr4_random 2324527 2324684 -16527129 + MLT2D LTR ERVL 177 379 -35 183 42 0 0 chr4_random 2324684 2324708 -16527105 + (CA)n Simple_repeat Simple_repeat 2 25 0 914 257 99 7 chr4_random 2324708 2324748 -16527065 + MLT2D LTR ERVL 379 414 0 27 49 0 0 chr4_random 2324891 2324932 -16526881 + AT_rich Low_complexity Low_complexity 1 41 0 2019 132 3 10 chr4_random 2325519 2325852 -16525961 + AluSx SINE Alu 1 331 0 749 232 57 10 chr4_random 2326071 2326265 -16525548 - MER21B LTR ERV1 -48 815 613 1390 217 57 41 chr4_random 2326281 2326700 -16525113 - LTR47B LTR ERVL 0 443 18 433 328 19 14 chr4_random 2327830 2328126 -16523687 - LTR47B-int LTR ERVL -1935 3493 3130 426 315 36 75 chr4_random 2328407 2329031 -16522782 - LTR47B-int LTR ERVL -2523 2820 2313 582 307 43 46 chr4_random 2329047 2329396 -16522417 - LTR47B-int LTR ERVL -3278 2065 1718 306 272 0 66 chr4_random 2330801 2330937 -16520876 - LTR47B-int LTR ERVL -5174 169 43 1096 256 98 17 chr4_random 2330984 2331390 -16520423 - LTR47B LTR ERVL 0 443 5 1918 258 33 36 chr4_random 2331410 2331988 -16519825 - MER21B LTR ERV1 -268 595 20 432 256 0 0 chr4_random 2332012 2332102 -16519711 - MER21B LTR ERV1 -773 90 1 280 252 28 28 chr4_random 2332231 2332338 -16519475 + HAL1 LINE L1 1276 1382 -1125 316 300 58 52 chr4_random 2332347 2332651 -16519162 + HAL1b LINE L1 365 1674 -677 30 45 0 0 chr4_random 2332786 2332830 -16518983 + AT_rich Low_complexity Low_complexity 1 44 0 280 347 17 19 chr4_random 2332912 2333052 -16518761 + MER5B DNA MER1_type 16 142 -36 13998 154 20 8 chr4_random 2333741 2337161 -16514652 - L1PA12 LINE L1 -55 6113 2658 606 293 40 13 chr4_random 2337822 2338047 -16513766 + L1ME LINE L1 5561 5791 -330 471 18 0 0 chr4_random 2338152 2338208 -16513605 + (TA)n Simple_repeat Simple_repeat 1 56 0 204 97 0 0 chr4_random 2339743 2339774 -16512039 + (TG)n Simple_repeat Simple_repeat 2 32 0 2117 123 0 13 chr4_random 2339854 2340170 -16511643 + AluSx SINE Alu 1 312 0 391 271 20 94 chr4_random 2340721 2340924 -16510889 + MLT1J2 LTR MaLR 263 450 0 2781 300 102 56 chr4_random 2342870 2345019 -16506794 - L2 LINE L2 -4 3309 1058 286 265 78 10 chr4_random 2345234 2345336 -16506477 - MLT1J LTR MaLR -314 197 89 325 307 106 17 chr4_random 2345421 2345600 -16506213 - L2 LINE L2 -2266 1048 854 2746 134 7 2 chr4_random 2345644 2346068 -16505745 - MSTA LTR MaLR 0 428 3 193 375 88 22 chr4_random 2346116 2346252 -16505561 + MIR3 SINE MIR 22 166 -42 354 323 38 111 chr4_random 2347288 2347629 -16504184 + L2 LINE L2 2938 3253 -19 267 304 65 22 chr4_random 2347666 2347804 -16504009 - L2 LINE L2 -882 2432 2289 193 188 0 175 chr4_random 2348671 2348751 -16503062 - MIR SINE MIR -75 187 122 195 273 45 15 chr4_random 2350847 2350913 -16500900 + MIR SINE MIR 88 155 -107 1135 281 84 57 chr4_random 2352689 2353202 -16498611 + MER77 LTR ERV1 66 592 -13 1831 188 23 67 chr4_random 2353212 2353594 -16498219 + MLT2D LTR ERVL 3 365 -49 279 0 0 0 chr4_random 2353594 2353625 -16498188 + (TG)n Simple_repeat Simple_repeat 2 32 0 1831 188 23 67 chr4_random 2353625 2353673 -16498140 + MLT2D LTR ERVL 365 414 0 1556 116 72 108 chr4_random 2355221 2355610 -16496203 - THE1C LTR MaLR 0 375 1 292 268 41 73 chr4_random 2357177 2357300 -16494513 - MIR3 SINE MIR -49 159 41 216 227 187 0 chr4_random 2357491 2357566 -16494247 - MIR SINE MIR -62 146 58 272 207 117 72 chr4_random 2357794 2357905 -16493908 + MLT1L LTR MaLR 126 241 -374 1513 189 7 11 chr4_random 2357973 2358248 -16493565 + AluJo SINE Alu 19 292 -20 32 0 0 0 chr4_random 2358444 2358476 -16493337 + AT_rich Low_complexity Low_complexity 1 32 0 352 272 22 22 chr4_random 2358549 2358685 -16493128 + LTR33 LTR ERVL 12 147 -374 477 301 46 18 chr4_random 2358793 2359003 -16492810 + LTR33 LTR ERVL 300 521 0 366 206 174 0 chr4_random 2359138 2359230 -16492583 - MLT1C LTR MaLR -12 455 348 937 179 79 5 chr4_random 2359499 2359787 -16492026 - MLT1C LTR MaLR -114 353 5 553 345 60 4 chr4_random 2360038 2360270 -16491543 - MIR SINE MIR -10 252 8 25 0 0 0 chr4_random 2360604 2360629 -16491184 + AT_rich Low_complexity Low_complexity 1 25 0 238 313 0 0 chr4_random 2361606 2361673 -16490140 + CT-rich Low_complexity Low_complexity 4 70 0 264 30 0 0 chr4_random 2362239 2362272 -16489541 + (TG)n Simple_repeat Simple_repeat 2 34 0 348 24 0 0 chr4_random 2363568 2363609 -16488204 + (TG)n Simple_repeat Simple_repeat 2 42 0 472 267 99 91 chr4_random 2364089 2364463 -16487350 + Charlie8 DNA MER1_type 1 219 -2198 183 283 50 33 chr4_random 2364577 2364637 -16487176 + MIR SINE MIR 29 89 -119 2351 171 26 14 chr4_random 2364845 2365272 -16486541 - MSTB1 LTR MaLR 0 432 1 3587 200 45 25 chr4_random 2365280 2365731 -16486082 - MSTB1-int LTR MaLR -3 1648 1175 1682 154 6 60 chr4_random 2365731 2366062 -16485751 - AluSq SINE Alu 0 313 1 3587 200 45 25 chr4_random 2366062 2366364 -16485449 - MSTB1-int LTR MaLR -476 1175 880 264 231 0 0 chr4_random 2366366 2366418 -16485395 + LTR30 LTR ERV1 1 52 -670 369 197 22 112 chr4_random 2366422 2366600 -16485213 + LTR12 LTR ERV1 123 284 -430 248 258 32 21 chr4_random 2366600 2366693 -16485120 + LTR30 LTR ERV1 550 643 -79 660 156 22 28 chr4_random 2366693 2366840 -16484973 + LTR12 LTR ERV1 301 714 0 * 25318 110 27 20 chr4_random 2366840 2371502 -16480311 + HERV9 LTR ERV1 80 4855 -3544 3135 118 2 0 chr4_random 2371471 2371919 -16479894 + HERV9 LTR ERV1 7951 8399 0 * 1392 145 8 8 chr4_random 2371919 2372153 -16479660 + LTR12 LTR ERV1 1 234 -480 355 235 59 0 chr4_random 2372260 2372362 -16479451 + LTR30 LTR ERV1 545 652 -70 453 162 0 0 chr4_random 2372362 2372430 -16479383 + LTR12 LTR ERV1 617 684 -30 1479 218 156 7 chr4_random 2372435 2372839 -16478974 - MSTB1-int LTR MaLR -751 900 437 946 184 69 175 chr4_random 2372839 2373290 -16478523 + MER67D LTR ERV1 112 514 0 22 99 0 0 chr4_random 2373362 2373433 -16478380 + AT_rich Low_complexity Low_complexity 1 71 0 2362 66 10 0 chr4_random 2373582 2373884 -16477929 - AluY SINE Alu -6 305 1 250 283 239 9 chr4_random 2375768 2375881 -16475932 - MLT1K LTR MaLR -304 284 146 1333 161 0 18 chr4_random 2376569 2376787 -16475026 - AluSx SINE Alu -98 214 1 1259 208 133 11 chr4_random 2378006 2378463 -16473350 - MER114 LTR ERV -71 577 65 525 266 59 41 chr4_random 2378593 2378762 -16473051 + MLT1A2 LTR MaLR 1 172 -218 252 154 0 0 chr4_random 2378772 2378824 -16472989 + CT-rich Low_complexity Low_complexity 2 53 0 875 245 20 10 chr4_random 2378824 2379024 -16472789 + MLT1A2 LTR MaLR 173 374 0 1508 158 4 8 chr4_random 2379203 2379449 -16472364 - AluSx SINE Alu -67 245 1 329 235 30 121 chr4_random 2379962 2380061 -16471752 - L2 LINE L2 -4 3309 3229 2494 59 7 0 chr4_random 2380061 2380365 -16471448 + AluY SINE Alu 3 308 -3 329 235 30 121 chr4_random 2380365 2380431 -16471382 - L2 LINE L2 -84 3229 3159 306 315 27 9 chr4_random 2380463 2380574 -16471239 - L2 LINE L2 -256 3057 2945 1367 296 118 35 chr4_random 2380624 2381363 -16470450 - L2 LINE L2 -885 2429 1630 244 292 73 0 chr4_random 2381895 2381991 -16469822 + MIR SINE MIR 45 147 -115 27 29 0 0 chr4_random 2382008 2382042 -16469771 + AT_rich Low_complexity Low_complexity 1 34 0 10326 203 44 11 chr4_random 2382197 2385669 -16466144 + L1PA16 LINE L1 2585 6166 0 272 285 49 24 chr4_random 2386129 2386252 -16465561 + MLT1K LTR MaLR 463 588 0 348 24 0 0 chr4_random 2387075 2387116 -16464697 + (TG)n Simple_repeat Simple_repeat 2 42 0 325 310 74 25 chr4_random 2387250 2387426 -16464387 + MIR SINE MIR 10 189 -62 1327 222 5 81 chr4_random 2388244 2388614 -16463199 + MLT1A1 LTR MaLR 24 365 0 23 0 0 0 chr4_random 2391326 2391349 -16460464 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr4_random 2392495 2392536 -16459277 + AT_rich Low_complexity Low_complexity 1 41 0 234 313 37 37 chr4_random 2394542 2394676 -16457137 + MLT1L LTR MaLR 149 282 -333 335 300 12 0 chr4_random 2395211 2395291 -16456522 - MER5A DNA MER1_type -99 90 10 254 299 0 0 chr4_random 2397800 2397867 -16453946 + GA-rich Low_complexity Low_complexity 4 70 0 1513 189 7 11 chr4_random 2399076 2399351 -16452462 + AluJo SINE Alu 19 292 -20 32 0 0 0 chr4_random 2399547 2399579 -16452234 + AT_rich Low_complexity Low_complexity 1 32 0 512 237 22 15 chr4_random 2399652 2399787 -16452026 + LTR33 LTR ERVL 12 147 -374 343 327 46 18 chr4_random 2399895 2400104 -16451709 + LTR33 LTR ERVL 300 520 -1 2369 93 0 3 chr4_random 2400884 2401194 -16450619 + AluY SINE Alu 1 309 -2 189 0 0 0 chr4_random 2401201 2401222 -16450591 + (GAAA)n Simple_repeat Simple_repeat 2 22 0 1321 196 55 43 chr4_random 2401573 2401971 -16449842 + MLT2B1 LTR ERVL 1 452 -68 360 0 0 0 chr4_random 2401979 2402019 -16449794 + (CA)n Simple_repeat Simple_repeat 2 41 0 2248 93 0 10 chr4_random 2402247 2402548 -16449265 - AluY SINE Alu -13 298 1 5988 32 0 0 chr4_random 2402597 2403340 -16448473 - L1PA3 LINE L1 -2748 3398 2656 11883 36 3 0 chr4_random 2403341 2404784 -16447029 + L1PA3 LINE L1 3400 4846 -1300 7627 26 1 0 chr4_random 2404784 2405775 -16446038 + L1PA3 LINE L1 5161 6152 -3 345 208 0 0 chr4_random 2408194 2408271 -16443542 + (TATG)n Simple_repeat Simple_repeat 2 78 0 391 326 32 47 chr4_random 2408674 2408864 -16442949 - MIR3 SINE MIR -4 204 18 1981 129 0 22 chr4_random 2409114 2409431 -16442382 + AluSg SINE Alu 1 310 0 2556 109 14 0 chr4_random 2410094 2410462 -16441351 + THE1C LTR MaLR 3 375 0 278 348 163 26 chr4_random 2411743 2412309 -16439504 + L2 LINE L2 1706 2348 -966 338 243 0 0 chr4_random 2412775 2412849 -16438964 - MER45 DNA AcHobo -1 1580 1507 1353 251 99 12 chr4_random 2412937 2413389 -16438424 - MER67D LTR ERV1 -5 509 58 269 70 0 158 chr4_random 2413389 2413446 -16438367 - MLT2B1 LTR ERVL 0 520 473 1202 245 62 58 chr4_random 2413474 2413943 -16437870 - MLT2B1 LTR ERVL -40 480 10 666 235 12 31 chr4_random 2413940 2414102 -16437711 - MER67B LTR ERV1 -502 159 1 * 1123 88 12 0 chr4_random 2414409 2414569 -16437244 + L1PA7 LINE L1 5991 6152 -2 2337 302 144 34 chr4_random 2415181 2415412 -16436401 - L2 LINE L2 -84 3229 3025 2193 101 7 7 chr4_random 2415412 2415719 -16436094 - AluSc SINE Alu -1 308 2 2337 302 144 34 chr4_random 2415719 2416916 -16434897 - L2 LINE L2 -288 3025 1653 878 234 141 99 chr4_random 2418714 2419397 -16432416 - LTR50 LTR ERVL 0 795 2 21 0 0 0 chr4_random 2420554 2420575 -16431238 + AT_rich Low_complexity Low_complexity 1 21 0 582 152 18 0 chr4_random 2421890 2422002 -16429811 + AluSg/x SINE Alu 189 302 -7 317 379 38 8 chr4_random 2422508 2422640 -16429173 - MIR SINE MIR -105 157 22 231 286 175 13 chr4_random 2424848 2425002 -16426811 + MLT1L LTR MaLR 7 185 -430 355 267 119 23 chr4_random 2425677 2425853 -16425960 - HAL1 LINE L1 -1521 986 794 341 301 80 55 chr4_random 2425988 2426069 -16425744 + L2 LINE L2 3014 3092 -221 1966 146 33 33 chr4_random 2426069 2426432 -16425381 - THE1B LTR MaLR 0 364 2 341 301 80 55 chr4_random 2426432 2426639 -16425174 + L2 LINE L2 3092 3309 -4 366 80 0 0 chr4_random 2426688 2426738 -16425075 + (TC)n Simple_repeat Simple_repeat 1 50 0 1609 169 52 21 chr4_random 2426738 2426945 -16424868 - AluJb SINE Alu -11 301 81 1857 159 21 26 chr4_random 2426945 2427322 -16424491 + THE1C LTR MaLR 1 375 0 1609 169 52 21 chr4_random 2427322 2427404 -16424409 - AluJb SINE Alu -231 81 3 22 0 0 0 chr4_random 2428786 2428808 -16423005 + AT_rich Low_complexity Low_complexity 1 22 0 228 289 47 0 chr4_random 2430624 2430752 -16421061 - L1ME LINE L1 -681 5481 5348 311 333 68 23 chr4_random 2431046 2431223 -16420590 - L1ME LINE L1 -1131 5015 4831 46 54 0 0 chr4_random 2431231 2431305 -16420508 + AT_rich Low_complexity Low_complexity 1 74 0 270 279 29 48 chr4_random 2431317 2431421 -16420392 - L1ME LINE L1 -1302 4844 4743 23 0 0 0 chr4_random 2431572 2431595 -16420218 + AT_rich Low_complexity Low_complexity 1 23 0 6133 223 50 63 chr4_random 2431742 2431762 -16420051 - MER52A LTR ERV1 0 1755 1736 2116 140 11 32 chr4_random 2431762 2432134 -16419679 + THE1B LTR MaLR 1 364 0 6133 223 50 63 chr4_random 2432134 2433335 -16418478 - MER52A LTR ERV1 -19 1736 641 3992 87 128 26 chr4_random 2433335 2433959 -16417854 + LTR12 LTR ERV1 1 688 0 6133 223 50 63 chr4_random 2433959 2434593 -16417220 - MER52A LTR ERV1 -1114 641 1 1259 144 50 67 chr4_random 2434863 2435161 -16416652 + L1MA5 LINE L1 6008 6300 0 615 292 70 103 chr4_random 2435257 2435842 -16415971 - L2 LINE L2 -470 2844 2279 321 292 79 35 chr4_random 2436502 2436673 -16415140 + LTR65 LTR ERV1 338 521 -148 869 192 165 52 chr4_random 2436673 2437001 -16414812 - MLT1A1 LTR MaLR 0 365 1 321 292 79 35 chr4_random 2437001 2437031 -16414782 + LTR65 LTR ERV1 521 548 -121 13058 206 31 14 chr4_random 2437753 2442761 -16409052 - L1MA6 LINE L1 -4 7715 2615 320 303 40 10 chr4_random 2443232 2443331 -16408482 + MIR SINE MIR 46 147 -115 752 253 13 0 chr4_random 2443539 2443697 -16408116 + MLT1E LTR MaLR 1 160 -433 278 235 10 0 chr4_random 2443875 2443977 -16407836 + CT-rich Low_complexity Low_complexity 3 105 0 266 299 28 21 chr4_random 2444038 2444182 -16407631 - L1M4 LINE L1 -3575 2571 2427 286 259 169 24 chr4_random 2444339 2444629 -16407184 - L1M4 LINE L1 -3129 3017 2686 500 160 0 77 chr4_random 2444749 2444943 -16406870 + C-rich Low_complexity Low_complexity 1 179 0 34 55 0 0 chr4_random 2445358 2445413 -16406400 + AT_rich Low_complexity Low_complexity 1 55 0 4004 174 33 62 chr4_random 2445457 2446421 -16405392 - L1MA10 LINE L1 -133 6201 5266 5451 222 117 9 chr4_random 2446422 2448146 -16403667 - L1MA10 LINE L1 -1255 4891 2982 210 395 117 0 chr4_random 2450792 2450954 -16400859 + L2 LINE L2 2726 2906 -408 706 272 71 49 chr4_random 2451113 2451620 -16400193 + MLT2B1 LTR ERVL 1 518 -2 464 70 12 116 chr4_random 2451620 2451706 -16400107 - MADE1 DNA Mariner -3 77 1 523 0 30 0 chr4_random 2451707 2451774 -16400039 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 256 132 0 0 chr4_random 2451774 2451812 -16400001 + MLT2C2 LTR ERVL 427 464 0 349 302 36 14 chr4_random 2451815 2451954 -16399859 + L2 LINE L2 3165 3306 -7 25 0 0 0 chr4_random 2452103 2452128 -16399685 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr4_random 2452257 2452292 -16399521 + AT_rich Low_complexity Low_complexity 1 35 0 345 279 0 0 chr4_random 2452310 2452396 -16399417 + MIR SINE MIR 104 189 -73 30 0 0 0 chr4_random 2452697 2452727 -16399086 + AT_rich Low_complexity Low_complexity 1 30 0 218 254 0 28 chr4_random 2453028 2453099 -16398714 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 1937 93 12 0 chr4_random 2454925 2455183 -16396630 + AluSp SINE Alu 22 282 -31 1280 107 6 0 chr4_random 2455014 2455183 -16396630 + AluSp SINE Alu 113 312 0 250 33 0 0 chr4_random 2455183 2455213 -16396600 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 4098 152 11 18 chr4_random 2455572 2456288 -16395525 - MER50 LTR ERV1 -23 711 1 24 53 0 0 chr4_random 2457964 2458002 -16393811 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr4_random 2458118 2458140 -16393673 + AT_rich Low_complexity Low_complexity 1 22 0 292 266 46 18 chr4_random 2458817 2459000 -16392813 + L1MC4a LINE L1 5698 5890 -285 2123 134 0 0 chr4_random 2459497 2459788 -16392025 + AluSx SINE Alu 3 293 -19 2633 135 11 24 chr4_random 2460888 2461339 -16390474 + MER65A LTR ERV1 1 445 0 2409 53 0 31 chr4_random 2462741 2463062 -16388751 + AluY SINE Alu 1 311 0 336 330 78 37 chr4_random 2463718 2463936 -16387877 - MIR SINE MIR -2 260 34 2052 118 3 0 chr4_random 2464262 2464566 -16387247 + AluY SINE Alu 1 305 -6 1590 269 82 36 chr4_random 2464960 2465768 -16386045 - L1M4 LINE L1 -2034 4112 3268 1625 234 70 29 chr4_random 2465796 2466087 -16385726 - L1M4 LINE L1 -2925 3221 2943 2061 116 7 3 chr4_random 2466087 2466390 -16385423 + AluY SINE Alu 1 304 -7 1625 234 70 29 chr4_random 2466390 2466823 -16384990 - L1M4 LINE L1 -3203 2943 2467 4785 180 13 40 chr4_random 2466835 2467772 -16384041 + L1PA15 LINE L1 4435 5295 -870 2182 124 0 3 chr4_random 2467772 2468079 -16383734 + AluY SINE Alu 3 308 -3 4785 180 13 40 chr4_random 2468079 2468928 -16382885 + L1PA15 LINE L1 5295 6165 0 310 290 149 8 chr4_random 2468924 2469172 -16382641 + L1MC4a LINE L1 5592 5874 -1934 * 2399 191 88 53 chr4_random 2469403 2470043 -16381770 - L1MB5 LINE L1 -2 6172 5511 1221 286 89 47 chr4_random 2470101 2471250 -16380563 + L1MEc LINE L1 1265 2421 -3794 4415 234 31 20 chr4_random 2471320 2472545 -16379268 - L1P LINE L1 -1907 4239 3001 1407 300 64 65 chr4_random 2472548 2473776 -16378037 - L1PA12 LINE L1 -5394 2187 998 298 403 22 0 chr4_random 2474150 2474284 -16377529 + L2 LINE L2 2916 3052 -261 378 17 51 0 chr4_random 2474325 2474384 -16377429 + (TA)n Simple_repeat Simple_repeat 1 62 0 220 299 154 17 chr4_random 2474416 2474533 -16377280 + L2 LINE L2 3177 3309 -4 5053 189 26 13 chr4_random 2474920 2475839 -16375974 + L1MA3 LINE L1 16 946 -6619 4779 110 51 19 chr4_random 2475842 2476651 -16375162 + L1MA3 LINE L1 2527 3361 -4204 10508 178 84 29 chr4_random 2476972 2481100 -16370713 + L1MA3 LINE L1 3347 7724 0 21 95 0 0 chr4_random 2481855 2481918 -16369895 + AT_rich Low_complexity Low_complexity 1 63 0 351 60 0 0 chr4_random 2482552 2482602 -16369211 + (TC)n Simple_repeat Simple_repeat 1 50 0 234 0 0 0 chr4_random 2482602 2482628 -16369185 + (TG)n Simple_repeat Simple_repeat 1 26 0 288 329 118 53 chr4_random 2482687 2482915 -16368898 - L3 LINE CR1 -13 1564 1322 294 321 135 42 chr4_random 2483275 2483468 -16368345 - MIR SINE MIR -26 236 26 1196 232 91 28 chr4_random 2484713 2485032 -16366781 - MER58B DNA MER1_type -1 340 2 1576 214 84 27 chr4_random 2485588 2486027 -16365786 + MLT1C LTR MaLR 2 465 -2 23 0 0 0 chr4_random 2486735 2486758 -16365055 + AT_rich Low_complexity Low_complexity 1 23 0 696 116 78 0 chr4_random 2486922 2487051 -16364762 - L1PA13 LINE L1 0 6163 6025 15153 212 36 18 chr4_random 2487055 2487153 -16364660 - L1PA13 LINE L1 -1054 5743 5648 1929 169 129 0 chr4_random 2487153 2487532 -16364281 + MSTA LTR MaLR 1 428 0 15153 212 36 18 chr4_random 2487532 2491330 -16360483 - L1PA13 LINE L1 -1149 5648 1754 1988 178 20 3 chr4_random 2491430 2491784 -16360029 - L1PA13 LINE L1 -5029 1758 1399 2280 272 146 17 chr4_random 2491786 2492177 -16359636 - L1PA13 LINE L1 -5525 1262 923 2088 152 11 16 chr4_random 2492177 2492552 -16359261 - THE1C LTR MaLR -2 373 1 2280 272 146 17 chr4_random 2492552 2492877 -16358936 - L1PA13 LINE L1 -5864 923 453 2055 180 38 44 chr4_random 2492878 2493446 -16358367 - MLT2A2 LTR ERVL -2 552 1 1834 203 6 0 chr4_random 2493446 2493761 -16358052 - L1PA13 LINE L1 -6329 458 142 630 272 68 34 chr4_random 2495130 2495336 -16356477 + MIR SINE MIR 25 237 -25 192 293 208 9 chr4_random 2495400 2495506 -16356307 + MIR SINE MIR 79 205 -57 355 341 0 0 chr4_random 2495675 2495801 -16356012 + LTR33 LTR ERVL 11 136 -385 1624 243 6 31 chr4_random 2495994 2496352 -16355461 + MER70A LTR ERVL 1 349 -123 707 195 39 0 chr4_random 2496452 2496580 -16355233 - L1PA13 LINE L1 -6654 133 1 2676 140 12 0 chr4_random 2496625 2497039 -16354774 + MSTA LTR MaLR 1 419 -9 574 254 142 86 chr4_random 2497399 2497637 -16354176 + MLT1H LTR MaLR 38 261 -294 519 31 0 0 chr4_random 2497637 2497702 -16354111 + (GA)n Simple_repeat Simple_repeat 1 65 0 574 254 142 86 chr4_random 2497702 2497943 -16353870 + MLT1H LTR MaLR 261 540 -15 269 306 27 0 chr4_random 2498790 2498901 -16352912 - L2 LINE L2 -1227 2087 1974 728 326 67 20 chr4_random 2498923 2499414 -16352399 + LTR33 LTR ERVL 8 521 0 417 302 59 22 chr4_random 2499419 2499641 -16352172 - L2 LINE L2 -1377 1937 1708 2477 84 0 0 chr4_random 2502303 2502612 -16349201 - AluY SINE Alu -2 309 1 196 315 46 83 chr4_random 2503121 2503229 -16348584 - L2 LINE L2 -112 3160 3057 2176 147 28 3 chr4_random 2503715 2504070 -16347743 + THE1B LTR MaLR 1 364 0 220 402 103 0 chr4_random 2504071 2504158 -16347655 - MER91A DNA MER1_type -7 189 94 228 231 19 0 chr4_random 2504422 2504474 -16347339 + (TG)n Simple_repeat Simple_repeat 2 54 0 272 392 12 12 chr4_random 2505411 2505577 -16346236 - MIR SINE MIR -83 179 14 300 172 23 0 chr4_random 2505611 2505676 -16346137 + MLT1E LTR MaLR 5 57 -536 * 726 209 81 12 chr4_random 2505672 2505844 -16345969 + MLT1E1 LTR MaLR 471 654 0 1619 159 20 38 chr4_random 2505952 2506298 -16345515 + L1MC1 LINE L1 5993 6332 -1 959 233 47 0 chr4_random 2506887 2507145 -16344668 - L1MC3 LINE L1 -8 7777 7508 598 163 0 0 chr4_random 2507366 2507464 -16344349 - AluJ/FLAM SINE Alu -214 98 1 1914 213 34 14 chr4_random 2507466 2507908 -16343905 - L1MC3 LINE L1 -264 7521 7071 1232 289 36 6 chr4_random 2507908 2508379 -16343434 - L1MCa LINE L1 -3314 3112 2628 634 221 89 57 chr4_random 2508374 2508690 -16343123 - L1MCa LINE L1 -4038 2388 2063 * 299 380 31 18 chr4_random 2508895 2509058 -16342755 + MIR SINE MIR 24 188 -74 195 310 62 18 chr4_random 2509504 2509617 -16342196 - MIR SINE MIR -69 193 76 21 0 0 0 chr4_random 2509928 2509949 -16341864 + AT_rich Low_complexity Low_complexity 1 21 0 1388 207 47 55 chr4_random 2510205 2510587 -16341226 + MLT1B LTR MaLR 1 379 -11 207 184 0 0 chr4_random 2510953 2510991 -16340822 + (TATG)n Simple_repeat Simple_repeat 4 41 0 11076 204 46 56 chr4_random 2511089 2511560 -16340253 - L1MA4A LINE L1 -6 6852 6378 1567 173 27 13 chr4_random 2511560 2511860 -16339953 + AluJb SINE Alu 3 306 -6 11076 204 46 56 chr4_random 2511860 2516177 -16335636 - L1MA4A LINE L1 -480 6378 2192 3388 37 2 0 chr4_random 2516177 2516585 -16335228 + L1PA3 LINE L1 5746 6154 -1 11076 204 46 56 chr4_random 2516585 2518754 -16333059 - L1MA4A LINE L1 -4666 2192 2 2821 96 20 8 chr4_random 2519199 2519593 -16332220 + MLT2A1 LTR ERVL 1 399 -45 21 0 0 0 chr4_random 2519599 2519620 -16332193 + AT_rich Low_complexity Low_complexity 1 21 0 186 93 23 81 chr4_random 2519620 2519706 -16332107 + (TATAA)n Simple_repeat Simple_repeat 2 82 0 29 70 0 0 chr4_random 2519715 2519772 -16332041 + AT_rich Low_complexity Low_complexity 1 57 0 1111 174 29 19 chr4_random 2519772 2520042 -16331771 - MLT2A2 LTR ERVL -8 445 271 431 345 74 35 chr4_random 2520048 2520725 -16331088 + L1PA16 LINE L1 134 1511 -5276 301 250 0 0 chr4_random 2521366 2521430 -16330383 + L1 LINE L1 2644 2707 -3439 1990 186 36 32 chr4_random 2521438 2521985 -16329828 + MLT2A2 LTR ERVL 1 554 0 8879 233 13 18 chr4_random 2521985 2525459 -16326354 + L1PA16 LINE L1 3358 6812 -5 191 59 0 29 chr4_random 2525623 2525657 -16326156 + (CTAAA)n Simple_repeat Simple_repeat 3 35 0 4379 187 10 1 chr4_random 2525971 2526839 -16324974 + L1 LINE L1 4231 5106 -1040 24 32 0 0 chr4_random 2527729 2527760 -16324053 + AT_rich Low_complexity Low_complexity 1 31 0 279 0 0 0 chr4_random 2528427 2528458 -16323355 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 1021 307 130 8 chr4_random 2528572 2529080 -16322733 - L2 LINE L2 -955 2359 1790 370 187 0 53 chr4_random 2529082 2529232 -16322581 + (TA)n Simple_repeat Simple_repeat 2 143 0 312 256 0 33 chr4_random 2529234 2529324 -16322489 + L1MC4 LINE L1 6617 6703 -1339 1341 332 143 19 chr4_random 2529327 2530453 -16321360 - L2 LINE L2 -1517 1797 532 197 259 37 83 chr4_random 2530463 2530571 -16321242 + L2 LINE L2 3153 3255 -58 375 73 0 0 chr4_random 2530657 2530712 -16321101 + (TG)n Simple_repeat Simple_repeat 2 56 0 2408 84 0 0 chr4_random 2530872 2531183 -16320630 + AluY SINE Alu 1 311 0 305 146 0 0 chr4_random 2531668 2531716 -16320097 - MLT2B1 LTR ERVL 0 520 473 207 190 0 0 chr4_random 2531734 2531792 -16320021 + CT-rich Low_complexity Low_complexity 2 59 0 213 65 0 0 chr4_random 2531986 2532017 -16319796 + (TC)n Simple_repeat Simple_repeat 2 32 0 197 206 0 16 chr4_random 2532016 2532079 -16319734 + (TA)n Simple_repeat Simple_repeat 1 62 0 * 222 295 144 29 chr4_random 2532277 2532416 -16319397 - L2 LINE L2 -8 3305 3151 260 377 77 14 chr4_random 2532673 2532880 -16318933 - L2 LINE L2 -463 2851 2632 23 33 0 0 chr4_random 2533953 2533983 -16317830 + AT_rich Low_complexity Low_complexity 1 30 0 2408 74 3 0 chr4_random 2534151 2534461 -16317352 - AluY SINE Alu 0 311 1 186 103 0 0 chr4_random 2534694 2534723 -16317090 + (A)n Simple_repeat Simple_repeat 1 29 0 222 91 0 0 chr4_random 2534829 2534862 -16316951 + (CA)n Simple_repeat Simple_repeat 1 33 0 291 93 0 0 chr4_random 2535178 2535221 -16316592 + (A)n Simple_repeat Simple_repeat 1 43 0 379 235 10 0 chr4_random 2535812 2535910 -16315903 - MER53 DNA DNA -90 99 1 337 335 135 0 chr4_random 2536728 2536898 -16314915 + MIR SINE MIR 37 229 -33 216 0 0 0 chr4_random 2536995 2537019 -16314794 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 1662 150 3 31 chr4_random 2537019 2537313 -16314500 - AluSx SINE Alu -26 286 1 263 295 30 54 chr4_random 2538099 2538265 -16313548 - L1ME3A LINE L1 0 6170 6009 2345 86 0 0 chr4_random 2538387 2538691 -16313122 - AluY SINE Alu -7 304 1 43 88 0 0 chr4_random 2538799 2538912 -16312901 + AT_rich Low_complexity Low_complexity 1 113 0 23 0 0 0 chr4_random 2539707 2539730 -16312083 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4_random 2540168 2540201 -16311612 + AT_rich Low_complexity Low_complexity 1 33 0 225 154 0 0 chr4_random 2540359 2540398 -16311415 + (TA)n Simple_repeat Simple_repeat 1 39 0 493 310 122 5 chr4_random 2540413 2540610 -16311203 + MIR SINE MIR 18 237 -25 1773 159 3 3 chr4_random 2542064 2542347 -16309466 - AluSx SINE Alu -24 288 6 216 324 42 14 chr4_random 2542509 2542580 -16309233 + L2 LINE L2 3179 3251 -21 404 333 108 32 chr4_random 2542810 2543188 -16308625 + L1ME LINE L1 12 418 -5652 508 268 77 12 chr4_random 2543219 2543387 -16308426 - MLT1A1 LTR MaLR -7 358 180 268 139 0 0 chr4_random 2543377 2543420 -16308393 - MLT1A1 LTR MaLR -329 45 3 * 613 269 52 54 chr4_random 2543650 2544097 -16307716 + L1ME LINE L1 569 1014 -5056 21 0 0 0 chr4_random 2544265 2544286 -16307527 + AT_rich Low_complexity Low_complexity 1 21 0 639 311 95 28 chr4_random 2544756 2545362 -16306451 - L2 LINE L2 -1 3312 2608 206 32 32 0 chr4_random 2546029 2546060 -16305753 + (CA)n Simple_repeat Simple_repeat 2 33 0 432 302 34 13 chr4_random 2546289 2546438 -16305375 + MIR SINE MIR 82 233 -29 211 254 30 30 chr4_random 2546856 2546990 -16304823 + (TA)n Simple_repeat Simple_repeat 2 135 0 21 89 0 0 chr4_random 2547034 2547090 -16304723 + AT_rich Low_complexity Low_complexity 1 56 0 40221 63 20 3 chr4_random 2547839 2549562 -16302251 + L1PA3 LINE L1 9 1701 -4454 2758 16 0 0 chr4_random 2549562 2549873 -16301940 - AluY SINE Alu 0 311 1 40221 63 20 3 chr4_random 2549873 2554190 -16297623 + L1PA3 LINE L1 1701 6155 0 219 357 101 33 chr4_random 2554938 2555274 -16296539 + L2 LINE L2 1310 1668 -1646 234 91 0 0 chr4_random 2555318 2555351 -16296462 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1064 250 85 0 chr4_random 2555353 2555613 -16296200 - AluJo SINE Alu -30 282 1 249 358 153 9 chr4_random 2555751 2556072 -16295741 + L2 LINE L2 1855 2221 -1093 23 54 0 0 chr4_random 2556581 2556618 -16295195 + AT_rich Low_complexity Low_complexity 1 37 0 185 298 329 37 chr4_random 2557144 2557333 -16294480 + MIR SINE MIR 20 262 0 226 192 14 14 chr4_random 2558307 2558380 -16293433 + (TA)n Simple_repeat Simple_repeat 2 74 0 449 315 72 18 chr4_random 2558510 2558732 -16293081 - MIR SINE MIR -21 241 8 1299 222 56 96 chr4_random 2559424 2559925 -16291888 + MLT1D LTR MaLR 23 503 -2 738 237 12 31 chr4_random 2560284 2560541 -16291272 - L1M4 LINE L1 -2638 3508 3257 1498 252 25 18 chr4_random 2560552 2561077 -16290736 - L1MCb LINE L1 -4867 1178 702 384 291 51 61 chr4_random 2561178 2561474 -16290339 - HsTC2 DNA Tc2 -1115 783 491 247 367 0 0 chr4_random 2561596 2561705 -16290108 - LTR67 LTR ERVL -37 520 412 2111 102 0 3 chr4_random 2562081 2562364 -16289449 + AluSx SINE Alu 1 282 -30 252 167 0 0 chr4_random 2562522 2562570 -16289243 + (TA)n Simple_repeat Simple_repeat 2 49 0 1876 155 134 8 chr4_random 2563705 2564085 -16287728 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr4_random 2564847 2564870 -16286943 + AT_rich Low_complexity Low_complexity 1 23 0 489 216 16 0 chr4_random 2564871 2564996 -16286817 - L1MA7 LINE L1 -11 6280 6154 253 145 29 43 chr4_random 2564996 2565065 -16286748 - L1MA7 LINE L1 -168 6123 6056 216 0 0 0 chr4_random 2565599 2565623 -16286190 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2133 77 7 7 chr4_random 2565625 2565910 -16285903 - AluY SINE Alu -26 285 1 1175 108 0 0 chr4_random 2566528 2566694 -16285119 - L1P LINE L1 -1840 4306 4141 * 6102 94 7 3 chr4_random 2566689 2567554 -16284259 + L1P LINE L1 4320 5187 -959 815 78 0 0 chr4_random 2567545 2567648 -16284165 + L1PA7 LINE L1 6026 6128 -26 * 2174 133 52 3 chr4_random 2568140 2568487 -16283326 - THE1B LTR MaLR 0 364 1 405 0 0 0 chr4_random 2570185 2570230 -16281583 + (CA)n Simple_repeat Simple_repeat 2 46 0 234 308 13 0 chr4_random 2570982 2571060 -16280753 + MIR SINE MIR 117 195 -67 219 300 50 0 chr4_random 2571082 2571142 -16280671 - L2 LINE L2 -61 3252 3190 23 54 0 0 chr4_random 2571335 2571372 -16280441 + AT_rich Low_complexity Low_complexity 1 37 0 1373 76 0 0 chr4_random 2571446 2571631 -16280182 + L1PA5 LINE L1 5968 6152 -2 24 0 0 0 chr4_random 2571759 2571783 -16280030 + AT_rich Low_complexity Low_complexity 1 24 0 1749 241 56 22 chr4_random 2572607 2573064 -16278749 + LTR40a LTR ERVL 4 481 -38 2964 92 8 42 chr4_random 2573064 2573541 -16278272 + L1PA13 LINE L1 5702 6162 -1 1749 241 56 22 chr4_random 2573541 2573582 -16278231 + LTR40a LTR ERVL 481 519 0 24 53 0 0 chr4_random 2573598 2573636 -16278177 + AT_rich Low_complexity Low_complexity 1 38 0 273 116 0 0 chr4_random 2573683 2573726 -16278087 + MSTA LTR MaLR 15 57 -371 * 334 239 22 33 chr4_random 2573718 2573810 -16278003 - MER20 DNA MER1_type -93 126 36 357 345 9 0 chr4_random 2575144 2575254 -16276559 + L2 LINE L2 3188 3298 -15 1560 213 3 0 chr4_random 2575273 2575559 -16276254 - AluJb SINE Alu -25 287 1 1521 210 36 80 chr4_random 2575599 2575641 -16276172 - MLT1D LTR MaLR 0 505 463 2325 55 7 0 chr4_random 2575641 2575934 -16275879 - AluY SINE Alu -16 295 1 1521 210 36 80 chr4_random 2575934 2576415 -16275398 - MLT1D LTR MaLR -42 463 5 343 314 60 43 chr4_random 2576421 2576606 -16275207 + MIR SINE MIR 74 261 -1 293 0 27 0 chr4_random 2576909 2576946 -16274867 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 953 175 68 142 chr4_random 2578122 2578447 -16273366 + AluJo SINE Alu 2 302 0 243 293 0 0 chr4_random 2578463 2578538 -16273275 + (CTA)n Simple_repeat Simple_repeat 1 75 0 881 162 0 3 chr4_random 2578563 2578792 -16273021 + AluSx SINE Alu 1 306 -6 3211 44 0 0 chr4_random 2579872 2580261 -16271552 - L1PA5 LINE L1 -2 6152 5764 4542 34 5 5 chr4_random 2580261 2580829 -16270984 + L1P LINE L1 4184 4751 -1395 1974 188 35 31 chr4_random 2581614 2582163 -16269650 - MLT2A2 LTR ERVL 0 554 1 22 35 0 0 chr4_random 2582460 2582489 -16269324 + AT_rich Low_complexity Low_complexity 1 29 0 1481 190 3 42 chr4_random 2582822 2583111 -16268702 - AluJo SINE Alu -34 278 1 22 0 0 0 chr4_random 2584068 2584090 -16267723 + AT_rich Low_complexity Low_complexity 1 22 0 1956 166 33 61 chr4_random 2584094 2584652 -16267161 + MLT2A2 LTR ERVL 1 551 -3 25 0 0 0 chr4_random 2584737 2584762 -16267051 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4_random 2585799 2585821 -16265992 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr4_random 2585831 2585868 -16265945 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr4_random 2585985 2586037 -16265776 + AT_rich Low_complexity Low_complexity 1 52 0 272 289 26 19 chr4_random 2587063 2587219 -16264594 + GA-rich Low_complexity Low_complexity 3 159 0 233 299 81 11 chr4_random 2587225 2587312 -16264501 - MIR SINE MIR -6 256 164 489 218 32 8 chr4_random 2587627 2587751 -16264062 - L1ME LINE L1 -640 5593 5467 1279 138 138 21 chr4_random 2587755 2588054 -16263759 + MER1B DNA MER1_type 1 334 -5 2318 134 0 48 chr4_random 2588054 2588450 -16263363 + MER51B LTR ERV1 1 377 0 332 162 0 27 chr4_random 2588461 2588535 -16263278 - L1ME LINE L1 -763 5468 5397 365 281 89 46 chr4_random 2588723 2589038 -16262775 - L1ME LINE L1 -923 5292 4959 180 0 0 0 chr4_random 2589038 2589058 -16262755 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 365 281 89 46 chr4_random 2589058 2589091 -16262722 - L1ME LINE L1 -1256 4959 4929 338 265 109 11 chr4_random 2589142 2589324 -16262489 - L1ME LINE L1 -3261 2954 2751 359 287 71 71 chr4_random 2589392 2589542 -16262271 - L1ME LINE L1 -4720 1676 1527 2226 108 3 3 chr4_random 2589542 2589847 -16261966 - AluSq SINE Alu -8 305 1 359 287 71 71 chr4_random 2589847 2590285 -16261528 - L1ME LINE L1 -4868 1528 1088 806 305 41 19 chr4_random 2590331 2590816 -16260997 - L1ME LINE L1 -5404 992 497 227 228 10 40 chr4_random 2591144 2591245 -16260568 + T-rich Low_complexity Low_complexity 2 99 0 28 29 0 0 chr4_random 2591629 2591664 -16260149 + AT_rich Low_complexity Low_complexity 1 35 0 454 235 18 72 chr4_random 2592039 2592205 -16259608 - MLT1H LTR MaLR -7 542 386 202 221 29 15 chr4_random 2592266 2592334 -16259479 + A-rich Low_complexity Low_complexity 4 72 0 336 322 49 0 chr4_random 2592917 2593060 -16258753 - MLT1H LTR MaLR -323 226 77 4979 141 25 2 chr4_random 2593274 2594616 -16257197 - L1PA13 LINE L1 -11 6152 4789 226 49 24 24 chr4_random 2595631 2595672 -16256141 + (TA)n Simple_repeat Simple_repeat 1 41 0 13664 30 9 1 chr4_random 2595770 2598187 -16253626 - L1PA4 LINE L1 -3 6152 3720 3505 41 5 0 chr4_random 2598187 2598627 -16253186 + L1PA4 LINE L1 3264 3705 -2441 329 354 70 9 chr4_random 2598638 2598853 -16252960 - L1ME4a LINE L1 -246 5875 5648 1323 238 179 9 chr4_random 2598855 2599385 -16252428 - L1MB8 LINE L1 0 6178 5559 1979 149 0 0 chr4_random 2599551 2599847 -16251966 + AluSx SINE Alu 1 296 -16 1319 224 61 12 chr4_random 2600168 2600512 -16251301 - L1MD1 LINE L1 -2 6240 5880 233 214 14 29 chr4_random 2600618 2600688 -16251125 - L1MB8 LINE L1 -824 5418 5350 * 599 258 35 55 chr4_random 2600682 2601027 -16250786 - L1MB8 LINE L1 -1294 4852 4515 3587 225 47 22 chr4_random 2601057 2601924 -16249889 - L1MDa LINE L1 -5205 1335 447 710 212 15 64 chr4_random 2602039 2602242 -16249571 + L1MDa LINE L1 259 451 -6089 21 0 0 0 chr4_random 2602607 2602628 -16249185 + AT_rich Low_complexity Low_complexity 1 21 0 1922 148 0 10 chr4_random 2604599 2604897 -16246916 - AluSx SINE Alu -17 295 1 205 328 16 0 chr4_random 2604916 2604980 -16246833 + L2 LINE L2 3193 3257 -15 249 57 0 0 chr4_random 2605028 2605063 -16246750 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr4_random 2605536 2605557 -16246256 + AT_rich Low_complexity Low_complexity 1 21 0 248 341 53 16 chr4_random 2605951 2606151 -16245662 - MIR SINE MIR 0 262 20 23 33 0 0 chr4_random 2606881 2606911 -16244902 + AT_rich Low_complexity Low_complexity 1 30 0 262 270 101 0 chr4_random 2606976 2607065 -16244748 + MIR SINE MIR 146 243 -19 273 252 0 0 chr4_random 2607361 2607464 -16244349 + (TA)n Simple_repeat Simple_repeat 1 103 0 736 340 79 44 chr4_random 2607492 2607896 -16243917 - HERVL LTR ERVL -736 5028 4589 1160 208 101 23 chr4_random 2607896 2608243 -16243570 - MLT1A2 LTR MaLR 0 374 1 736 340 79 44 chr4_random 2608243 2608520 -16243293 - HERVL LTR ERVL -1175 4589 4323 1371 239 53 111 chr4_random 2608592 2609177 -16242636 + MLT1E2 LTR MaLR 94 616 -10 313 350 44 28 chr4_random 2609189 2609420 -16242393 - HERVL LTR ERVL -1379 4275 4069 500 319 46 67 chr4_random 2610280 2610599 -16241214 - HERVL LTR ERVL -1708 3946 3637 2043 133 0 0 chr4_random 2610599 2610907 -16240906 - AluSx SINE Alu 0 310 3 500 319 46 67 chr4_random 2610907 2611061 -16240752 - HERVL LTR ERVL -2017 3637 3481 1061 270 65 36 chr4_random 2611407 2611936 -16239877 - MER34B LTR ERV1 -4 538 1 751 307 129 8 chr4_random 2611956 2612428 -16239385 + L1ME2 LINE L1 3790 4318 -1828 2701 199 5 0 chr4_random 2612431 2613134 -16238679 - L1PA16 LINE L1 -673 5493 4786 * 3376 161 45 8 chr4_random 2613130 2613727 -16238086 + L1PA16 LINE L1 5469 6087 -79 666 237 11 86 chr4_random 2613884 2614163 -16237650 + L1ME2 LINE L1 5520 5777 -389 503 221 47 21 chr4_random 2614193 2614353 -16237460 + L1ME2 LINE L1 5996 6160 -2 25 31 0 0 chr4_random 2614413 2614445 -16237368 + AT_rich Low_complexity Low_complexity 1 32 0 1274 234 68 25 chr4_random 2614772 2615166 -16236647 - MLT1D LTR MaLR -4 501 91 22 0 0 0 chr4_random 2615447 2615469 -16236344 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr4_random 2617515 2617558 -16234255 + AT_rich Low_complexity Low_complexity 1 43 0 240 350 20 30 chr4_random 2617945 2618045 -16233768 - L2 LINE L2 -18 3295 3197 278 287 61 55 chr4_random 2618432 2618596 -16233217 + MIR SINE MIR 92 256 -6 1611 228 33 64 chr4_random 2618713 2619370 -16232443 + LTR29 LTR ERV1 1 653 0 243 319 18 48 chr4_random 2619719 2619885 -16231928 + MLT1J1 LTR MaLR 18 178 -268 369 165 62 21 chr4_random 2619899 2619996 -16231817 - MLT1H1 LTR MaLR -6 549 449 5861 174 36 32 chr4_random 2620078 2620258 -16231555 - L1MA8 LINE L1 -324 5967 5789 186 43 0 0 chr4_random 2620258 2620281 -16231532 + (TG)n Simple_repeat Simple_repeat 2 24 0 5861 174 36 32 chr4_random 2620281 2622041 -16229772 - L1MA8 LINE L1 -502 5789 4028 311 316 8 31 chr4_random 2622041 2622187 -16229626 - MLT1F LTR MaLR -323 219 93 7694 21 0 1 chr4_random 2623549 2624954 -16226859 + L1PA2 LINE L1 4748 6151 -4 23 33 0 0 chr4_random 2624954 2624984 -16226829 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr4_random 2625121 2625149 -16226664 + AT_rich Low_complexity Low_complexity 1 28 0 920 138 0 0 chr4_random 2626477 2626615 -16225198 - AluSg/x SINE Alu -1 311 174 1102 126 7 0 chr4_random 2626615 2626766 -16225047 + AluSg SINE Alu 12 163 -147 348 64 0 0 chr4_random 2627689 2627736 -16224077 + (TC)n Simple_repeat Simple_repeat 2 48 0 225 94 0 0 chr4_random 2628537 2628569 -16223244 + (TG)n Simple_repeat Simple_repeat 2 33 0 264 322 111 17 chr4_random 2629161 2629341 -16222472 + MIR SINE MIR 18 214 -48 192 319 0 0 chr4_random 2629461 2629508 -16222305 + MER5B DNA MER1_type 3 49 -129 319 213 0 0 chr4_random 2630803 2630864 -16220949 + MLT1D LTR MaLR 442 502 -3 24 32 0 0 chr4_random 2631326 2631357 -16220456 + AT_rich Low_complexity Low_complexity 1 31 0 33 90 0 0 chr4_random 2631390 2631479 -16220334 + AT_rich Low_complexity Low_complexity 1 89 0 25 51 0 0 chr4_random 2632588 2632627 -16219186 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr4_random 2633293 2633329 -16218484 + AT_rich Low_complexity Low_complexity 1 36 0 2044 150 21 47 chr4_random 2633513 2633893 -16217920 + THE1C LTR MaLR 1 370 -5 1316 143 60 0 chr4_random 2634419 2634636 -16217177 + MER30 DNA MER1_type 1 230 0 1965 133 60 31 chr4_random 2635055 2635408 -16216405 + THE1B LTR MaLR 1 363 -1 21 36 0 0 chr4_random 2635610 2635638 -16216175 + AT_rich Low_complexity Low_complexity 1 28 0 34 42 0 0 chr4_random 2635658 2635706 -16216107 + AT_rich Low_complexity Low_complexity 1 48 0 213 355 0 0 chr4_random 2635742 2635818 -16215995 - MIR SINE MIR -77 185 110 628 302 78 25 chr4_random 2635832 2636077 -16215736 + MIR SINE MIR 4 261 -1 190 363 12 12 chr4_random 2636251 2636331 -16215482 - MIR SINE MIR -94 168 89 648 198 56 2 chr4_random 2636740 2636929 -16214884 + MER8 DNA MER2_type 1 239 0 222 156 0 0 chr4_random 2636933 2636978 -16214835 + (TG)n Simple_repeat Simple_repeat 2 46 0 493 343 179 7 chr4_random 2637237 2637683 -16214130 + L2 LINE L2 2355 2877 -437 2054 138 35 0 chr4_random 2637773 2638113 -16213700 - L1PB4 LINE L1 -7 6149 5798 323 377 86 16 chr4_random 2638116 2638429 -16213384 + L2 LINE L2 2978 3312 -1 288 70 0 0 chr4_random 2638964 2639007 -16212806 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 201 425 45 20 chr4_random 2639166 2639366 -16212447 - L2 LINE L2 -2689 625 421 209 383 62 57 chr4_random 2641828 2642037 -16209776 + L2 LINE L2 2831 3040 -232 378 319 46 74 chr4_random 2642192 2642518 -16209295 + L1ME4a LINE L1 5718 6034 -87 2187 107 3 3 chr4_random 2642671 2642970 -16208843 + AluSp SINE Alu 1 299 -14 934 294 56 49 chr4_random 2642986 2643599 -16208214 + L1MEc LINE L1 1389 2009 -4387 2151 122 54 20 chr4_random 2643599 2643951 -16207862 - THE1B LTR MaLR 0 364 1 934 294 56 49 chr4_random 2643951 2644011 -16207802 + L1MEc LINE L1 2009 2067 -4329 21 0 0 0 chr4_random 2644132 2644153 -16207660 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr4_random 2644302 2644340 -16207473 + AT_rich Low_complexity Low_complexity 1 38 0 2471 62 0 0 chr4_random 2644972 2645279 -16206534 - AluY SINE Alu -4 307 1 23 33 0 0 chr4_random 2645472 2645502 -16206311 + AT_rich Low_complexity Low_complexity 1 30 0 238 367 61 14 chr4_random 2645689 2645836 -16205977 - MER117 DNA MER1_type -38 159 6 196 372 46 31 chr4_random 2646723 2646919 -16204894 - L3 LINE CR1 -34 1543 1345 360 322 109 35 chr4_random 2647751 2647953 -16203860 + L2 LINE L2 1170 1386 -1928 586 224 81 81 chr4_random 2649918 2650361 -16201452 + L1MEc LINE L1 2655 3097 -3118 1283 208 53 101 chr4_random 2650709 2650826 -16200987 - LTR52 LTR ERVL -5 416 295 2229 58 3 79 chr4_random 2650826 2651156 -16200657 + AluY SINE Alu 1 305 -6 1283 208 53 101 chr4_random 2651156 2651267 -16200546 - LTR52 LTR ERVL -126 295 180 3279 26 5 0 chr4_random 2651267 2651658 -16200155 - L1PA4 LINE L1 0 6155 5763 1283 208 53 101 chr4_random 2651658 2651865 -16199948 - LTR52 LTR ERVL -241 180 1 2552 250 82 79 chr4_random 2651965 2652613 -16199200 + L1MEc LINE L1 3574 4218 -1997 36 62 0 0 chr4_random 2652613 2652677 -16199136 + AT_rich Low_complexity Low_complexity 1 64 0 2552 250 82 79 chr4_random 2652677 2653820 -16197993 + L1MEc LINE L1 4218 5434 -781 1184 273 70 16 chr4_random 2653843 2654342 -16197471 + L1ME1 LINE L1 5189 5715 -451 476 259 73 36 chr4_random 2654355 2654575 -16197238 + L1ME1 LINE L1 5935 6162 -4 2432 86 3 0 chr4_random 2655538 2655865 -16195948 - L1P4 LINE L1 -446 5722 5395 2588 102 14 27 chr4_random 2655865 2656275 -16195538 + L1PA13 LINE L1 5756 6163 0 2181 92 0 7 chr4_random 2656382 2656685 -16195128 - AluSx SINE Alu -11 301 1 275 377 71 6 chr4_random 2656687 2656870 -16194943 + MIR SINE MIR 56 250 -12 22 94 0 0 chr4_random 2657521 2657585 -16194228 + AT_rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr4_random 2658079 2658100 -16193713 + AT_rich Low_complexity Low_complexity 1 21 0 234 348 87 0 chr4_random 2658199 2658291 -16193522 - L2 LINE L2 -4 3309 3210 24 32 0 0 chr4_random 2658418 2658449 -16193364 + AT_rich Low_complexity Low_complexity 1 31 0 230 328 49 25 chr4_random 2658828 2658950 -16192863 + L3 LINE CR1 1452 1576 -1 883 272 120 38 chr4_random 2659117 2659591 -16192222 - HsTC2c DNA Tc2 -67 662 150 286 280 80 40 chr4_random 2659953 2660078 -16191735 - HsTC2c DNA Tc2 -590 139 10 30 27 0 0 chr4_random 2660743 2660780 -16191033 + AT_rich Low_complexity Low_complexity 1 37 0 698 238 12 12 chr4_random 2664098 2664258 -16187555 + FRAM SINE Alu 5 164 -2 583 126 0 0 chr4_random 2666518 2666621 -16185192 - L1MA7 LINE L1 0 6291 6189 1487 195 19 16 chr4_random 2666630 2667106 -16184707 - LTR64 LTR ERVK -17 541 1 3544 150 57 69 chr4_random 2667106 2667820 -16183993 - L1MA7 LINE L1 -99 6192 5486 5802 28 1 1 chr4_random 2667820 2668509 -16183304 + L1PA3 LINE L1 5464 6152 -3 3544 150 57 69 chr4_random 2668509 2668595 -16183218 - L1MA7 LINE L1 -805 5486 5401 559 194 0 0 chr4_random 2668590 2668688 -16183125 + L1M3 LINE L1 5677 5774 -560 * 2025 132 7 0 chr4_random 2669117 2669412 -16182401 - AluSq SINE Alu -16 297 1 744 273 171 98 chr4_random 2669653 2670675 -16181138 - MER52A LTR ERV1 -3 1752 656 21 57 0 0 chr4_random 2671309 2671344 -16180469 + AT_rich Low_complexity Low_complexity 1 35 0 1595 192 53 36 chr4_random 2673784 2674143 -16177670 - MLT1A1 LTR MaLR 0 365 1 283 359 38 15 chr4_random 2675689 2675820 -16175993 + MIR3 SINE MIR 41 174 -34 272 237 82 89 chr4_random 2677490 2677625 -16174188 + MER41B LTR ERV1 109 242 -393 * 962 142 0 0 chr4_random 2677620 2677761 -16174052 - THE1B LTR MaLR -223 141 1 193 281 21 83 chr4_random 2677833 2677929 -16173884 - L2 LINE L2 -1 3271 3182 677 132 28 0 chr4_random 2678323 2678467 -16173346 + (TAGA)n Simple_repeat Simple_repeat 1 148 0 240 373 40 0 chr4_random 2678620 2678770 -16173043 + MIR SINE MIR 104 259 -3 35 24 0 0 chr4_random 2678774 2678816 -16172997 + AT_rich Low_complexity Low_complexity 1 42 0 953 209 140 51 chr4_random 2679759 2680094 -16171719 + MLT1A1 LTR MaLR 1 365 0 594 247 55 0 chr4_random 2680605 2680751 -16171062 + AluJb SINE Alu 129 282 -30 2460 116 13 3 chr4_random 2681069 2681441 -16170372 + MER75 DNA T2_type 115 490 -24 225 191 0 0 chr4_random 2681441 2681488 -16170325 + A-rich Low_complexity Low_complexity 2 48 0 236 250 11 0 chr4_random 2681876 2681964 -16169849 - L1M4 LINE L1 -2181 3965 3877 11547 237 34 39 chr4_random 2681993 2683133 -16168680 - L1PA16 LINE L1 -19 7585 6441 1623 176 26 0 chr4_random 2683133 2683431 -16168382 - AluSx SINE Alu 0 307 3 11547 237 34 39 chr4_random 2683431 2686010 -16165803 - L1PA16 LINE L1 -1163 6441 3852 2306 95 13 0 chr4_random 2686010 2686315 -16165498 + AluSx SINE Alu 1 309 -3 336 48 0 0 chr4_random 2686316 2686358 -16165455 + (GGAA)n Simple_repeat Simple_repeat 4 45 0 11547 237 34 39 chr4_random 2686358 2688042 -16163771 - L1PA16 LINE L1 -3751 3853 2182 1113 299 59 37 chr4_random 2688483 2689079 -16162734 - L1PA16 LINE L1 -6177 1397 789 28 79 0 0 chr4_random 2689305 2689368 -16162445 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr4_random 2689663 2689687 -16162126 + AT_rich Low_complexity Low_complexity 1 24 0 253 269 0 19 chr4_random 2689745 2689849 -16161964 - L1M4 LINE L1 -3107 3039 2938 2188 192 59 18 chr4_random 2689967 2690612 -16161201 - L1MC3 LINE L1 -586 5758 5186 1583 169 28 35 chr4_random 2690642 2690932 -16160881 + AluJb SINE Alu 3 290 -22 28 48 0 0 chr4_random 2691826 2691868 -16159945 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr4_random 2691895 2691919 -16159894 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr4_random 2691974 2691997 -16159816 + AT_rich Low_complexity Low_complexity 1 23 0 214 238 0 0 chr4_random 2692015 2692057 -16159756 - L2 LINE L2 -17 3296 3255 24 67 0 0 chr4_random 2692389 2692434 -16159379 + AT_rich Low_complexity Low_complexity 1 45 0 2227 71 3 0 chr4_random 2693413 2693707 -16158106 + L1PA5 LINE L1 5860 6154 0 22 0 0 0 chr4_random 2694089 2694111 -16157702 + AT_rich Low_complexity Low_complexity 1 22 0 760 310 91 37 chr4_random 2694117 2694959 -16156854 - L1ME3A LINE L1 -15 6155 5257 397 348 123 10 chr4_random 2695111 2695502 -16156311 - L1ME3A LINE L1 -914 5232 4798 1817 149 4 0 chr4_random 2695801 2696076 -16155737 - AluSx SINE Alu -36 276 1 313 250 122 50 chr4_random 2696076 2696256 -16155557 - L1ME3A LINE L1 -1645 4501 4309 797 168 19 0 chr4_random 2697245 2697400 -16154413 + L1MB1 LINE L1 6011 6168 0 1777 113 122 36 chr4_random 2697550 2697885 -16153928 - THE1B LTR MaLR 0 364 1 203 322 58 0 chr4_random 2698008 2698095 -16153718 + L2 LINE L2 1617 1708 -1606 26 30 0 0 chr4_random 2698306 2698339 -16153474 + AT_rich Low_complexity Low_complexity 1 33 0 217 265 24 0 chr4_random 2698390 2698473 -16153340 + (TA)n Simple_repeat Simple_repeat 2 86 0 286 260 48 51 chr4_random 2698726 2698814 -16152999 - L1M4 LINE L1 -607 5577 5490 1438 182 122 12 chr4_random 2698814 2699143 -16152670 + MLT1A1 LTR MaLR 1 365 0 286 260 48 51 chr4_random 2699143 2699223 -16152590 - L1M4 LINE L1 -694 5490 5411 3013 237 40 48 chr4_random 2699576 2701032 -16150781 + L1M4c LINE L1 2080 4520 -1862 1432 211 43 4 chr4_random 2902517 2902797 -15949016 - AluJb SINE Alu -21 291 1 72 58 0 0 chr4_random 2902946 2903067 -15948746 + AT_rich Low_complexity Low_complexity 1 121 0 25 0 0 0 chr4_random 2903235 2903260 -15948553 + AT_rich Low_complexity Low_complexity 1 25 0 289 258 109 62 chr4_random 2903362 2903590 -15948223 - L1MC4 LINE L1 -89 7953 7737 1615 155 12 8 chr4_random 2903590 2903842 -15947971 - AluJo SINE Alu -19 293 41 289 258 109 62 chr4_random 2903842 2904109 -15947704 - L1MC4 LINE L1 -305 7737 7333 1960 198 3 3 chr4_random 2904110 2904469 -15947344 - MLT1A1 LTR MaLR -6 359 1 240 218 39 64 chr4_random 2904469 2904547 -15947266 - L1MC5 LINE L1 -630 7331 7256 * 555 262 50 36 chr4_random 2904518 2904975 -15946838 - L1MC4 LINE L1 -626 7416 6960 2241 121 0 6 chr4_random 2905520 2905834 -15945979 - AluSx SINE Alu 0 312 1 1086 152 34 34 chr4_random 2905885 2906089 -15945724 + MER3 DNA MER1_type 2 205 -4 313 182 0 45 chr4_random 2906352 2906418 -15945395 - MER4B LTR ERV1 -547 63 1 656 261 140 41 chr4_random 2908603 2909204 -15942609 + L1ME4a LINE L1 5362 6024 -97 480 256 13 58 chr4_random 2909329 2909485 -15942328 + MIR SINE MIR 49 197 -65 1765 173 7 7 chr4_random 2911299 2911605 -15940208 - AluJo SINE Alu -6 306 1 310 195 39 0 chr4_random 2911706 2911783 -15940030 + L1ME LINE L1 5774 5853 -268 194 315 0 0 chr4_random 2913891 2913945 -15937868 - MIR SINE MIR -68 140 87 926 252 68 11 chr4_random 2914124 2914390 -15937423 + MLT1C LTR MaLR 187 467 0 956 224 46 12 chr4_random 2914414 2914673 -15937140 - MLT1C LTR MaLR 0 467 200 1499 156 8 0 chr4_random 2914673 2914910 -15936903 - ERVL LTR ERVL -1363 4401 4163 2653 156 15 0 chr4_random 2914921 2915331 -15936482 - MSTB LTR MaLR -10 416 1 830 163 56 12 chr4_random 2915331 2915491 -15936322 - ERVL LTR ERVL -1598 4166 4000 615 243 59 120 chr4_random 2915966 2916374 -15935439 - MLT1J2 LTR MaLR -15 435 59 221 316 53 0 chr4_random 2916538 2916633 -15935180 + L2 LINE L2 3208 3307 -6 256 313 48 0 chr4_random 2916715 2916798 -15935015 + L2 LINE L2 2395 2481 -833 322 135 0 0 chr4_random 2916807 2916859 -15934954 - MLT1F LTR MaLR -1 541 490 452 107 13 0 chr4_random 2916864 2916939 -15934874 - MLT1F LTR MaLR -185 357 282 465 232 187 0 chr4_random 2917027 2917182 -15934631 - L2 LINE L2 0 3313 3130 1714 234 60 1 chr4_random 2917187 2917636 -15934177 - MLT1F LTR MaLR -58 509 1 381 324 51 17 chr4_random 2917653 2917829 -15933984 + L2 LINE L2 2494 2675 -639 1081 264 90 38 chr4_random 2917865 2918461 -15933352 - L2 LINE L2 0 3313 2681 276 292 0 14 chr4_random 2918485 2918557 -15933256 + L2 LINE L2 2716 2786 -528 27 0 0 0 chr4_random 2918561 2918588 -15933225 + AT_rich Low_complexity Low_complexity 1 27 0 441 0 0 0 chr4_random 2918765 2918814 -15932999 + (TG)n Simple_repeat Simple_repeat 2 50 0 588 14 0 0 chr4_random 2919055 2919124 -15932689 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 1025 13 76 0 chr4_random 2919235 2919393 -15932420 + CT-rich Low_complexity Low_complexity 1 170 0 2042 121 4 0 chr4_random 2919397 2919677 -15932136 - AluSx SINE Alu -31 281 1 234 235 0 0 chr4_random 2919677 2919728 -15932085 - MER5A DNA MER1_type -113 76 26 742 261 12 0 chr4_random 2919758 2919919 -15931894 - MER5B DNA MER1_type -14 164 2 259 313 12 0 chr4_random 2921122 2921202 -15930611 - MIR SINE MIR -61 147 67 457 272 74 36 chr4_random 2921420 2921729 -15930084 - L1MC5 LINE L1 -140 7821 7501 9607 242 50 9 chr4_random 2921913 2924086 -15927727 + L1PBa LINE L1 2719 5054 -1808 276 77 0 0 chr4_random 2924086 2924125 -15927688 + (CA)n Simple_repeat Simple_repeat 2 40 0 9607 242 50 9 chr4_random 2924125 2924998 -15926815 + L1PBa LINE L1 5054 5890 -972 28 29 0 0 chr4_random 2925101 2925136 -15926677 + AT_rich Low_complexity Low_complexity 1 35 0 1359 168 69 0 chr4_random 2925680 2925983 -15925830 - MER33 DNA MER1_type 0 324 1 189 0 0 0 chr4_random 2926193 2926214 -15925599 + (A)n Simple_repeat Simple_repeat 1 21 0 304 269 25 67 chr4_random 2926326 2926445 -15925368 - MIR SINE MIR -62 146 33 414 75 30 0 chr4_random 2928690 2928757 -15923056 - L1MB4 LINE L1 0 6180 6112 376 269 24 36 chr4_random 2930306 2930473 -15921340 - HAL1 LINE L1 -19 2488 2324 276 292 0 14 chr4_random 2930627 2930699 -15921114 + L2 LINE L2 2716 2786 -528 27 0 0 0 chr4_random 2930703 2930730 -15921083 + AT_rich Low_complexity Low_complexity 1 27 0 405 0 0 0 chr4_random 2930905 2930950 -15920863 + (TG)n Simple_repeat Simple_repeat 2 46 0 192 224 0 0 chr4_random 2931146 2931195 -15920618 - MER5A DNA MER1_type -80 109 61 1974 144 3 0 chr4_random 2931195 2931667 -15920146 - AluSx SINE Alu 0 473 1 242 216 0 0 chr4_random 2931667 2931718 -15920095 - MER5A DNA MER1_type -113 76 26 735 261 12 0 chr4_random 2931748 2931909 -15919904 - MER5B DNA MER1_type -14 164 2 3447 239 125 41 chr4_random 2933461 2934841 -15916972 - HAL1 LINE L1 -19 2488 993 3482 181 30 20 chr4_random 2934851 2935549 -15916264 - L1ME1 LINE L1 -5 6161 5457 888 235 50 6 chr4_random 2935552 2935870 -15915943 - HAL1 LINE L1 -1507 1000 638 785 331 25 11 chr4_random 2935905 2936186 -15915627 - MLT1K LTR MaLR -302 286 2 258 306 62 98 chr4_random 2936266 2936652 -15915161 + L2 LINE L2 2892 3263 -9 279 180 0 0 chr4_random 2936946 2936996 -15914817 + L2 LINE L2 3255 3304 -9 27 49 0 0 chr4_random 2937557 2937598 -15914215 + AT_rich Low_complexity Low_complexity 1 41 0 980 260 45 4 chr4_random 2938210 2938452 -15913361 + MIR SINE MIR 1 252 -10 192 268 113 14 chr4_random 2938566 2938637 -15913176 + MIR SINE MIR 133 210 -52 259 145 72 0 chr4_random 2938906 2938975 -15912838 + (TA)n Simple_repeat Simple_repeat 1 74 0 924 206 0 12 chr4_random 2939078 2939248 -15912565 + AluJo SINE Alu 1 168 -144 2428 228 74 3 chr4_random 2939249 2939868 -15911945 + L1ME2 LINE L1 5491 6153 -11 1109 139 0 44 chr4_random 2939929 2940109 -15911704 + AluSp SINE Alu 131 302 -11 1765 183 7 10 chr4_random 2940236 2940536 -15911277 - AluJo SINE Alu -13 299 1 2531 206 103 39 chr4_random 2940537 2941388 -15910425 - L1ME1 LINE L1 -945 5201 4296 539 281 6 37 chr4_random 2941755 2941919 -15909894 - MIR SINE MIR -64 198 40 21 36 0 0 chr4_random 2942414 2942442 -15909371 + AT_rich Low_complexity Low_complexity 1 28 0 194 279 152 0 chr4_random 2942880 2942959 -15908854 - L2 LINE L2 -2 3270 3180 268 349 95 57 chr4_random 2943164 2943479 -15908334 - L2 LINE L2 0 3272 2946 525 247 49 48 chr4_random 2943895 2944306 -15907507 - LTR33 LTR ERVL -4 517 38 431 288 26 61 chr4_random 2944907 2945310 -15906503 - L1MC/D LINE L1 -843 5516 5254 308 394 107 24 chr4_random 2945377 2945796 -15906017 + L2 LINE L2 2286 2739 -575 581 184 5 130 chr4_random 2947394 2947488 -15904325 + L1ME1 LINE L1 6000 6104 -62 369 0 0 0 chr4_random 2947488 2947529 -15904284 + (TG)n Simple_repeat Simple_repeat 2 42 0 581 184 5 130 chr4_random 2947529 2947579 -15904234 + L1ME1 LINE L1 6104 6119 -47 2310 96 0 3 chr4_random 2947579 2947880 -15903933 + AluSx SINE Alu 1 300 -12 581 184 5 130 chr4_random 2947880 2947919 -15903894 + L1ME1 LINE L1 6119 6161 -5 2744 104 5 2 chr4_random 2948721 2949114 -15902699 + MER1A DNA MER1_type 135 528 -1 351 254 107 8 chr4_random 2949163 2949285 -15902528 - MIR SINE MIR -96 166 33 183 139 0 0 chr4_random 2949360 2949396 -15902417 + (TGGGGG)n Simple_repeat Simple_repeat 6 41 0 1971 144 0 7 chr4_random 2949720 2950027 -15901786 - AluSx SINE Alu 0 305 1 259 280 101 39 chr4_random 2950406 2950613 -15901200 - MLT1K LTR MaLR -2 586 367 243 177 35 44 chr4_random 2951190 2951303 -15900510 + CT-rich Low_complexity Low_complexity 1 112 0 181 303 30 0 chr4_random 2951325 2951391 -15900422 - L2 LINE L2 -1 3271 3204 316 256 335 0 chr4_random 2951725 2951815 -15899998 + MIR SINE MIR 28 87 -175 2736 115 47 0 chr4_random 2951815 2952224 -15899589 - MSTC LTR MaLR 0 428 1 316 256 335 0 chr4_random 2952224 2952254 -15899559 + MIR SINE MIR 87 106 -156 504 0 0 0 chr4_random 2952254 2952310 -15899503 + (TA)n Simple_repeat Simple_repeat 1 56 0 316 256 335 0 chr4_random 2952310 2952364 -15899449 + MIR SINE MIR 106 262 0 1731 159 18 18 chr4_random 2952733 2953009 -15898804 - AluJo SINE Alu -36 276 1 5736 30 6 0 chr4_random 2953936 2954665 -15897148 - L1PA2 LINE L1 -777 5369 4637 6976 16 0 1 chr4_random 2954665 2955460 -15896353 + L1PA2 LINE L1 5353 6153 -2 1043 267 18 40 chr4_random 2955558 2955955 -15895858 - MLT1J LTR MaLR -115 396 9 242 87 22 0 chr4_random 2956117 2956163 -15895650 + (GGA)n Simple_repeat Simple_repeat 2 48 0 266 210 97 0 chr4_random 2956208 2956270 -15895543 - MIR SINE MIR -87 175 108 398 269 154 32 chr4_random 2956358 2956670 -15895143 - MLT1L LTR MaLR -15 600 251 608 121 0 86 chr4_random 2956831 2956947 -15894866 + FLAM_A SINE Alu 16 121 -21 307 212 0 91 chr4_random 2956949 2957048 -15894765 + L1MC4 LINE L1 6614 6703 -1339 252 0 0 0 chr4_random 2957048 2957076 -15894737 + (TA)n Simple_repeat Simple_repeat 2 29 0 216 363 128 64 chr4_random 2957187 2957391 -15894422 - L2 LINE L2 -10 3262 3046 192 351 85 0 chr4_random 2957447 2957541 -15894272 + L2 LINE L2 3189 3290 -23 2149 129 51 14 chr4_random 2959460 2959831 -15891982 + MSTB1 LTR MaLR 1 385 -47 230 385 26 68 chr4_random 2960000 2960265 -15891548 - L2 LINE L2 -25 3247 2994 592 13 13 13 chr4_random 2961218 2961296 -15890517 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 921 217 39 60 chr4_random 2961763 2962044 -15889769 + LTR16C LTR ERVL 216 490 -1 942 233 149 9 chr4_random 2963482 2963804 -15888009 - L1ME3A LINE L1 -23 6147 5781 566 206 58 13 chr4_random 2964804 2964959 -15886854 - MER112 DNA MER1_type -98 162 1 22 0 0 0 chr4_random 2965424 2965446 -15886367 + AT_rich Low_complexity Low_complexity 1 22 0 263 184 0 184 chr4_random 2966049 2966107 -15885706 - MER33 DNA MER1_type -2505 80 45 1786 169 7 14 chr4_random 2966107 2966397 -15885416 + AluJo SINE Alu 9 296 -16 263 184 0 184 chr4_random 2966397 2966436 -15885377 - MER33 DNA MER1_type -2540 45 1 24 53 0 0 chr4_random 2967658 2967696 -15884117 + AT_rich Low_complexity Low_complexity 1 38 0 755 241 11 0 chr4_random 2968783 2968957 -15882856 - L1MD2 LINE L1 -46 6313 6138 1043 181 6 0 chr4_random 2969022 2969193 -15882620 + FRAM SINE Alu 1 171 -5 2187 115 3 10 chr4_random 2969342 2969646 -15882167 - AluSg SINE Alu -8 302 1 2429 64 12 12 chr4_random 2969979 2970386 -15881427 - L1PA3 LINE L1 -4894 1252 718 * 32246 34 2 1 chr4_random 2970383 2975270 -15876543 + L1PA3 LINE L1 1263 6152 -3 304 276 32 45 chr4_random 2975301 2975457 -15876356 + L1MC5 LINE L1 7732 7885 -76 1647 170 53 36 chr4_random 2975593 2976202 -15875611 + L1M3 LINE L1 4945 5556 -624 392 152 0 13 chr4_random 2976202 2976281 -15875532 + L1MB3 LINE L1 6093 6170 -13 21 71 0 0 chr4_random 2976458 2976500 -15875313 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr4_random 2976531 2976564 -15875249 + AT_rich Low_complexity Low_complexity 1 33 0 1602 184 7 10 chr4_random 2977167 2977455 -15874358 + AluJo SINE Alu 18 304 -8 431 311 97 22 chr4_random 2978054 2978375 -15873438 + L1ME LINE L1 36 380 -6016 4050 248 155 35 chr4_random 2978718 2978994 -15872819 + L1ME LINE L1 2435 2676 -3539 2181 107 0 19 chr4_random 2978994 2979304 -15872509 + AluSx SINE Alu 3 306 -6 4050 248 155 35 chr4_random 2979304 2979714 -15872099 + L1ME LINE L1 2676 3035 -3180 1256 120 105 5 chr4_random 2979714 2979923 -15871890 - MER30 DNA MER1_type 0 230 1 4050 248 155 35 chr4_random 2979923 2981725 -15870088 + L1ME LINE L1 3035 5241 -974 1711 99 0 0 chr4_random 2981725 2981946 -15869867 + AluY SINE Alu 81 301 -10 4050 248 155 35 chr4_random 2981946 2982007 -15869806 + L1ME LINE L1 5241 5293 -922 742 193 34 17 chr4_random 2982003 2982179 -15869634 + L1ME LINE L1 5546 5724 -509 * 213 167 42 0 chr4_random 2982890 2982938 -15868875 + CT-rich Low_complexity Low_complexity 2 51 0 552 286 45 7 chr4_random 2983133 2983287 -15868526 + MIR SINE MIR 17 176 -86 * 2628 169 75 20 chr4_random 2983283 2983920 -15867893 + L1MB7 LINE L1 5497 6168 -16 193 288 50 25 chr4_random 2983938 2984018 -15867795 + MIR SINE MIR 181 262 0 300 333 40 32 chr4_random 2984533 2984659 -15867154 - MIR SINE MIR -130 132 6 260 307 102 8 chr4_random 2986494 2986621 -15865192 + MIR SINE MIR 120 258 -4 331 329 71 19 chr4_random 2987438 2987593 -15864220 - MER5A DNA MER1_type -6 183 21 3683 219 15 41 chr4_random 2988352 2988755 -15863058 + L1PA16 LINE L1 5393 5805 -361 2203 165 59 10 chr4_random 2988755 2989161 -15862652 - MSTA LTR MaLR -2 426 1 3683 219 15 41 chr4_random 2989161 2989431 -15862382 + L1PA16 LINE L1 5805 6046 -120 1881 154 133 13 chr4_random 2989431 2989813 -15862000 - MSTA LTR MaLR 0 428 1 3683 219 15 41 chr4_random 2989813 2989923 -15861890 + L1PA16 LINE L1 6046 6157 -9 47 53 0 0 chr4_random 2989923 2989998 -15861815 + AT_rich Low_complexity Low_complexity 1 75 0 180 0 0 0 chr4_random 2990632 2990652 -15861161 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 746 167 141 0 chr4_random 2991110 2991266 -15860547 + MER58A DNA MER1_type 34 211 -13 1851 86 0 4 chr4_random 2991553 2991823 -15859990 + AluY SINE Alu 39 307 0 21 57 0 0 chr4_random 2992465 2992500 -15859313 + AT_rich Low_complexity Low_complexity 1 35 0 449 326 8 8 chr4_random 2992507 2992636 -15859177 - MER5A DNA MER1_type -1 188 60 1095 201 39 46 chr4_random 2992640 2993052 -15858761 - LTR37A LTR ERV1 0 426 18 288 206 16 0 chr4_random 2993583 2993646 -15858167 - L1MA6 LINE L1 -14 6286 6223 880 204 35 3 chr4_random 2993682 2993882 -15857931 - L1MA6 LINE L1 -150 7425 7223 758 161 121 0 chr4_random 2993889 2994038 -15857775 + MSTA LTR MaLR 1 167 -261 648 219 20 20 chr4_random 2994031 2994182 -15857631 + MSTA LTR MaLR 278 428 0 * 9992 190 46 74 chr4_random 2994182 2996343 -15855470 - L1MA6 LINE L1 -510 7209 4941 1423 224 38 3 chr4_random 2996343 2996633 -15855180 - AluJo SINE Alu -5 307 8 9992 190 46 74 chr4_random 2996633 2998544 -15853269 - L1MA6 LINE L1 -2778 4941 2977 840 313 76 56 chr4_random 2998559 2999456 -15852357 - L1MA6 LINE L1 -4266 2299 1385 404 248 0 19 chr4_random 2999494 2999599 -15852214 - L1MA6 LINE L1 -6921 568 466 264 280 75 28 chr4_random 2999745 2999852 -15851961 + MIR SINE MIR 80 191 -71 922 210 72 47 chr4_random 3000201 3000546 -15851267 - MER67C LTR ERV1 -3 511 173 326 241 18 62 chr4_random 3000547 3000659 -15851154 - MLT1I LTR MaLR -240 169 63 241 154 115 0 chr4_random 3000771 3000823 -15850990 - L1M2 LINE L1 -542 5755 5698 372 308 41 20 chr4_random 3001124 3001270 -15850543 + MIR SINE MIR 24 172 -90 436 178 257 0 chr4_random 3003135 3003236 -15848577 - FLAM_C SINE Alu -14 129 3 25 51 0 0 chr4_random 3004302 3004341 -15847472 + AT_rich Low_complexity Low_complexity 1 39 0 1653 199 77 35 chr4_random 3004597 3005079 -15846734 - MLT1D LTR MaLR -3 502 1 1067 205 46 113 chr4_random 3005400 3005791 -15846022 - MLT1A1 LTR MaLR 0 365 1 307 267 0 11 chr4_random 3006322 3006412 -15845401 + LTR67 LTR ERVL 434 522 -35 778 308 73 36 chr4_random 3007254 3007666 -15844147 - MLT1K LTR MaLR -9 579 153 707 258 58 26 chr4_random 3007674 3007864 -15843949 - MER91A DNA MER1_type 0 196 1 9508 207 40 61 chr4_random 3008490 3010700 -15841113 + L1MA9 LINE L1 2111 4367 -2014 334 228 33 11 chr4_random 3010700 3010792 -15841021 + MER2 DNA MER2_type 2 95 -250 318 194 16 0 chr4_random 3010792 3010854 -15840959 - MER2 DNA MER2_type 0 345 283 9508 207 40 61 chr4_random 3010854 3012216 -15839597 + L1MA9 LINE L1 4366 5688 -693 1709 174 42 0 chr4_random 3012216 3012504 -15839309 + AluJo SINE Alu 1 300 -12 9508 207 40 61 chr4_random 3012504 3013177 -15838636 + L1MA9 LINE L1 5688 6374 -7 1208 193 89 8 chr4_random 3013358 3013828 -15837985 - Charlie1b DNA MER1_type 0 523 22 1052 183 40 77 chr4_random 3014237 3014537 -15837276 - AluJo SINE Alu -17 295 7 1556 194 7 3 chr4_random 3014605 3014893 -15836920 - AluJb SINE Alu -23 289 1 24 32 0 0 chr4_random 3015160 3015191 -15836622 + AT_rich Low_complexity Low_complexity 1 31 0 1003 235 103 31 chr4_random 3016262 3016611 -15835202 - MLT1A2 LTR MaLR 0 374 1 303 279 131 44 chr4_random 3016912 3017141 -15834672 - MIR SINE MIR -13 249 1 247 269 158 86 chr4_random 3018359 3018593 -15833220 - MIR SINE MIR -11 251 1 230 285 52 44 chr4_random 3020374 3020509 -15831304 + MIR SINE MIR 36 173 -62 359 356 73 31 chr4_random 3020628 3021013 -15830800 + L2 LINE L2 1498 1898 -1416 1096 209 123 3 chr4_random 3021013 3021353 -15830460 - MLT1B LTR MaLR -1 389 9 283 50 50 0 chr4_random 3021396 3021436 -15830377 + (TTTC)n Simple_repeat Simple_repeat 1 42 0 672 163 28 17 chr4_random 3021436 3021614 -15830199 + CT-rich Low_complexity Low_complexity 1 180 0 298 109 0 22 chr4_random 3021619 3021683 -15830130 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 1702 287 150 31 chr4_random 3022112 3022666 -15829147 + L2 LINE L2 2108 2785 -528 1755 113 17 0 chr4_random 3022666 3022904 -15828909 - AluSx SINE Alu -13 299 58 1702 287 150 31 chr4_random 3022904 3023162 -15828651 + L2 LINE L2 2785 3011 -302 7953 35 0 65 chr4_random 3023178 3024216 -15827597 - L1PA4 LINE L1 -8 6147 5140 2908 6 0 0 chr4_random 3024216 3024527 -15827286 - AluYa5 SINE Alu 0 311 1 7953 35 0 65 chr4_random 3024527 3024629 -15827184 - L1PA4 LINE L1 -1015 5140 5033 7537 30 0 0 chr4_random 3024629 3025534 -15826279 + L1P LINE L1 2266 3170 -2976 736 138 3 0 chr4_random 3025549 3034479 -15817334 - CER Satellite Satellite 0 8957 1 43363 51 2 3 chr4_random 3034486 3034500 -15817313 - L1PA3 LINE L1 0 6155 6142 5773 49 13 0 chr4_random 3034500 3035177 -15816636 - L1PA4 LINE L1 0 6155 5470 43363 51 2 3 chr4_random 3035177 3041316 -15810497 - L1PA3 LINE L1 -13 6142 4 411 103 0 0 chr4_random 3041316 3041374 -15810439 - CER Satellite Satellite -35 61 4 182 279 76 25 chr4_random 3041622 3041701 -15810112 - MIR SINE MIR -68 194 112 972 146 24 188 chr4_random 3041723 3041754 -15810059 + L1MB4 LINE L1 5420 5454 -729 378 0 0 0 chr4_random 3041754 3041796 -15810017 + (CA)n Simple_repeat Simple_repeat 2 43 0 972 146 24 188 chr4_random 3041796 3041849 -15809964 + L1MB4 LINE L1 5454 5514 -669 1589 142 58 34 chr4_random 3041849 3041955 -15809858 + AluSx SINE Alu 1 103 -209 195 42 0 0 chr4_random 3041955 3041979 -15809834 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1589 142 58 34 chr4_random 3041979 3042167 -15809646 + AluSx SINE Alu 103 302 -10 972 146 24 188 chr4_random 3042167 3042417 -15809396 + L1MB4 LINE L1 5514 5700 -483 433 200 12 0 chr4_random 3042432 3042512 -15809301 - 7SLRNA srpRNA srpRNA -10 310 230 917 257 80 0 chr4_random 3042766 3043003 -15808810 - 7SLRNA srpRNA srpRNA -62 258 3 1854 184 50 35 chr4_random 3043008 3043432 -15808381 + L1MB4 LINE L1 5688 6117 -63 195 42 0 0 chr4_random 3043441 3043465 -15808348 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 667 238 14 0 chr4_random 3044333 3044480 -15807333 + Ricksha DNA DNA 1 149 -1105 11183 154 28 19 chr4_random 3044605 3044669 -15807144 - Ricksha DNA DNA -75 3171 3109 1829 144 7 0 chr4_random 3044669 3044954 -15806859 + AluY SINE Alu 12 298 -13 11183 154 28 19 chr4_random 3044954 3046854 -15804959 - Ricksha DNA DNA -137 3109 1189 1762 158 6 2 chr4_random 3046856 3047183 -15804630 - Ricksha DNA DNA -2745 501 95 841 129 0 72 chr4_random 3047184 3047294 -15804519 + FLAM_C SINE Alu 3 119 -193 2767 103 11 19 chr4_random 3047294 3047672 -15804141 + THE1C LTR MaLR 1 375 0 10687 126 40 5 chr4_random 3047672 3049198 -15802615 + THE1C-int LTR MaLR 1 1580 0 2348 122 55 17 chr4_random 3049198 3049559 -15802254 + THE1C LTR MaLR 1 375 0 841 129 0 72 chr4_random 3049559 3049585 -15802228 + FLAM_C SINE Alu 116 131 -181 556 141 0 0 chr4_random 3049585 3049670 -15802143 - Ricksha DNA DNA -1955 91 7 344 215 140 11 chr4_random 3050243 3050336 -15801477 - MER63 DNA MER1_type -104 732 2 300 290 68 68 chr4_random 3050385 3050653 -15801160 + L2 LINE L2 2753 3049 -264 270 284 0 0 chr4_random 3050653 3050720 -15801093 - MLT1E2 LTR MaLR 0 626 560 1041 178 91 38 chr4_random 3050722 3050986 -15800827 - MLT1D LTR MaLR -158 347 70 569 289 22 50 chr4_random 3051025 3051302 -15800511 + L2 LINE L2 3045 3313 0 765 224 0 0 chr4_random 3051515 3051640 -15800173 - FLAM_C SINE Alu -17 126 2 207 0 0 0 chr4_random 3053377 3053400 -15798413 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 279 0 0 0 chr4_random 3053399 3053430 -15798383 + (TG)n Simple_repeat Simple_repeat 2 32 0 272 336 116 14 chr4_random 3054734 3054880 -15796933 + MARNA DNA Mariner 94 254 -332 369 301 114 23 chr4_random 3054894 3055070 -15796743 + MIR SINE MIR 23 214 -48 203 191 0 21 chr4_random 3055838 3055885 -15795928 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 21 0 0 0 chr4_random 3057211 3057232 -15794581 + AT_rich Low_complexity Low_complexity 1 21 0 8114 26 0 0 chr4_random 3057245 3058448 -15793365 - L1PA3 LINE L1 -2 6153 4951 30185 24 6 0 chr4_random 3058819 3063081 -15788732 + L1PA3 LINE L1 1870 6155 0 25 0 0 0 chr4_random 3063098 3063123 -15788690 + AT_rich Low_complexity Low_complexity 1 25 0 278 237 62 10 chr4_random 3265480 3265577 -15586236 + MIR3 SINE MIR 96 197 -11 301 268 142 39 chr4_random 3266689 3266943 -15584870 - L2 LINE L2 -1221 2093 1814 202 271 129 12 chr4_random 3267005 3267090 -15584723 - MIR SINE MIR -75 133 39 203 139 56 0 chr4_random 3268285 3268321 -15583492 + MIR SINE MIR 106 143 -119 2380 186 94 8 chr4_random 3269511 3270010 -15581803 - MLT1F LTR MaLR 0 542 1 335 233 10 10 chr4_random 3270314 3270417 -15581396 - MER103 DNA DNA -55 111 9 348 289 26 6 chr4_random 3270972 3271128 -15580685 + HAL1 LINE L1 2240 2398 -109 2188 109 0 0 chr4_random 3271222 3271516 -15580297 - AluSx SINE Alu -14 298 5 629 200 0 0 chr4_random 3271735 3271860 -15579953 + MLT2B3 LTR ERVL 1 125 -429 1151 212 21 90 chr4_random 3271951 3272329 -15579484 + MLT2B3 LTR ERVL 154 505 -49 431 52 0 0 chr4_random 3272329 3272387 -15579426 - L1PA7 LINE L1 -1 6153 6096 459 241 89 81 chr4_random 3272912 3273148 -15578665 + MIR SINE MIR 12 249 -13 1834 182 0 7 chr4_random 3273153 3273460 -15578353 - AluJo SINE Alu -7 305 1 229 288 190 65 chr4_random 3273521 3273705 -15578108 + MIR3 SINE MIR 2 208 0 3242 124 41 16 chr4_random 3274142 3274699 -15577114 + L1PB4 LINE L1 5579 6149 -7 24 0 0 0 chr4_random 3274704 3274728 -15577085 + AT_rich Low_complexity Low_complexity 1 24 0 1066 81 0 0 chr4_random 3275929 3276065 -15575748 - AluY SINE Alu -15 296 161 377 238 60 0 chr4_random 3277096 3277180 -15574633 - L2 LINE L2 -1 3271 3183 1336 19 0 0 chr4_random 3279115 3279270 -15572543 + L1PA4 LINE L1 5999 6153 -2 236 285 85 15 chr4_random 3279335 3279504 -15572309 - L1M2 LINE L1 -644 5524 5391 1808 110 4 4 chr4_random 3279505 3279751 -15572062 - AluSx SINE Alu -13 299 54 1294 109 105 13 chr4_random 3279853 3280082 -15571731 + MSTA LTR MaLR 179 428 0 3531 104 6 11 chr4_random 3280121 3280661 -15571152 - L1PA16 LINE L1 -104 6062 5526 * 4323 206 4 7 chr4_random 3280659 3281626 -15570187 - L1M2 LINE L1 -1064 5082 4119 234 295 116 9 chr4_random 3281994 3282106 -15569707 - MIR SINE MIR -129 133 10 1684 153 7 0 chr4_random 3282347 3282629 -15569184 + L1PA16 LINE L1 5874 6157 -9 276 30 0 0 chr4_random 3283099 3283132 -15568681 + (CA)n Simple_repeat Simple_repeat 2 34 0 290 318 30 0 chr4_random 3283135 3283201 -15568612 + L2 LINE L2 3155 3222 -50 522 293 60 20 chr4_random 3283431 3283581 -15568232 + L2 LINE L2 3116 3271 -1 335 290 38 0 chr4_random 3283819 3283950 -15567863 - L1M4 LINE L1 -905 5241 5106 22 0 0 0 chr4_random 3284796 3284818 -15566995 + AT_rich Low_complexity Low_complexity 1 22 0 1614 196 43 27 chr4_random 3284915 3284985 -15566828 - L1MB8 LINE L1 -5 6173 6106 1579 166 83 47 chr4_random 3284985 3285346 -15566467 - MLT1A2 LTR MaLR 0 374 1 1614 196 43 27 chr4_random 3285346 3285713 -15566100 - L1MB8 LINE L1 -72 6106 5729 549 70 0 174 chr4_random 3286050 3286165 -15565648 - AluSg1 SINE Alu -214 95 1 258 313 31 31 chr4_random 3286184 3286280 -15565533 - MIR3 SINE MIR -28 180 85 341 327 219 23 chr4_random 3286284 3286544 -15565269 + L2 LINE L2 2961 3271 -1 834 229 116 53 chr4_random 3286961 3287163 -15564650 - L2 LINE L2 -1 3312 3081 386 38 0 19 chr4_random 3287163 3287216 -15564597 + (TG)n Simple_repeat Simple_repeat 1 52 0 834 229 116 53 chr4_random 3287216 3287332 -15564481 - L2 LINE L2 -232 3081 2974 213 368 47 28 chr4_random 3287619 3287725 -15564088 + L3b LINE CR1 1417 1524 -59 230 262 48 12 chr4_random 3288855 3288939 -15562874 + MIR SINE MIR 94 180 -82 19735 100 3 2 chr4_random 3289236 3292240 -15559573 - L1P LINE L1 -1763 4383 1378 188 343 15 0 chr4_random 3293018 3293085 -15558728 + L2 LINE L2 3205 3272 0 376 199 111 78 chr4_random 3293471 3293623 -15558190 - MIR SINE MIR -58 150 18 246 261 0 43 chr4_random 3293774 3293843 -15557970 - MIR SINE MIR -119 143 78 1259 192 44 41 chr4_random 3294569 3294589 -15557224 - MLT1A1 LTR MaLR 0 365 347 2235 119 19 26 chr4_random 3294589 3294967 -15556846 + THE1C LTR MaLR 1 375 0 1259 192 44 41 chr4_random 3294967 3295310 -15556503 - MLT1A1 LTR MaLR -18 347 1 2110 106 7 7 chr4_random 3295776 3296059 -15555754 - AluSx SINE Alu -29 283 1 783 182 60 122 chr4_random 3299081 3299400 -15552413 - MLT1A1 LTR MaLR 0 365 67 303 218 0 0 chr4_random 3299402 3299457 -15552356 + Tigger5 DNA MER2_type 1 55 -2268 311 236 68 110 chr4_random 3300383 3300460 -15551353 + MLT1L LTR MaLR 205 284 -331 2012 100 0 0 chr4_random 3300460 3300720 -15551093 + AluSg SINE Alu 37 296 -14 311 236 68 110 chr4_random 3300720 3300934 -15550879 + MLT1L LTR MaLR 284 484 -131 2343 168 63 31 chr4_random 3302417 3302906 -15548907 + MLT1D LTR MaLR 1 505 0 2291 77 3 3 chr4_random 3303306 3303624 -15548189 + AluSq SINE Alu 1 318 0 520 343 136 25 chr4_random 3304609 3305460 -15546353 + L2 LINE L2 2097 3058 -214 514 316 48 5 chr4_random 3305526 3305713 -15546100 - MIR SINE MIR -11 251 57 368 265 71 0 chr4_random 3305781 3305879 -15545934 + L2 LINE L2 3208 3312 -1 192 368 147 0 chr4_random 3305933 3306096 -15545717 - MIR SINE MIR -74 188 2 340 328 51 104 chr4_random 3306177 3306716 -15545097 + L2 LINE L2 2776 3272 0 183 80 0 0 chr4_random 3307527 3307552 -15544261 + (CAT)n Simple_repeat Simple_repeat 3 27 0 581 300 68 52 chr4_random 3311952 3312335 -15539478 - LTR33 LTR ERVL 0 521 133 413 268 9 0 chr4_random 3316437 3316549 -15535264 - MER103 DNA DNA -53 113 1 351 290 9 9 chr4_random 3316812 3316919 -15534894 + L2 LINE L2 3164 3270 -2 231 36 0 0 chr4_random 3317042 3317070 -15534743 + (TG)n Simple_repeat Simple_repeat 2 29 0 388 251 164 140 chr4_random 3317773 3317997 -15533816 + L2 LINE L2 2890 3128 -144 1720 208 37 0 chr4_random 3317997 3318324 -15533489 - MER58B DNA MER1_type 0 341 3 388 251 164 140 chr4_random 3318324 3318470 -15533343 + L2 LINE L2 3128 3269 -3 267 254 0 15 chr4_random 3318486 3318553 -15533260 - MIR SINE MIR -19 243 178 543 313 42 19 chr4_random 3318596 3318810 -15533003 - MIR SINE MIR -38 224 6 308 351 15 0 chr4_random 3318925 3319059 -15532754 + MIR3 SINE MIR 68 203 -5 1142 201 130 53 chr4_random 3320283 3320621 -15531192 + MLT1A1 LTR MaLR 1 364 -1 2643 26 0 7 chr4_random 3320817 3321119 -15530694 - AluY SINE Alu -11 300 1 246 128 0 0 chr4_random 3321134 3321173 -15530640 + (A)n Simple_repeat Simple_repeat 1 39 0 420 37 0 0 chr4_random 3321423 3321477 -15530336 + (CA)n Simple_repeat Simple_repeat 2 55 0 259 323 59 41 chr4_random 3321915 3322135 -15529678 + L3 LINE CR1 1101 1324 -253 1861 130 0 60 chr4_random 3322469 3322785 -15529028 + AluSx SINE Alu 1 297 -15 536 296 159 5 chr4_random 3322859 3323079 -15528734 + MIR SINE MIR 5 258 -4 1242 230 128 55 chr4_random 3323171 3323468 -15528345 - MLT1D LTR MaLR -2 503 158 1484 207 7 16 chr4_random 3323468 3323772 -15528041 + AluSx SINE Alu 1 301 -11 1242 230 128 55 chr4_random 3323772 3323943 -15527870 - MLT1D LTR MaLR -347 158 1 24 0 0 0 chr4_random 3324401 3324425 -15527388 + AT_rich Low_complexity Low_complexity 1 24 0 2139 127 0 0 chr4_random 3324425 3324717 -15527096 - AluSx SINE Alu -20 292 1 279 284 0 57 chr4_random 3325411 3325499 -15526314 - L2 LINE L2 -3 3269 3187 2909 102 69 0 chr4_random 3325735 3326167 -15525646 - L1MA8 LINE L1 -8 6283 5822 230 329 14 0 chr4_random 3326443 3326516 -15525297 + MIR SINE MIR 42 115 -93 222 227 0 0 chr4_random 3326756 3326800 -15525013 + CT-rich Low_complexity Low_complexity 4 47 0 1257 183 77 128 chr4_random 3326813 3327178 -15524635 - L1MC4 LINE L1 -2 8040 7705 1975 152 3 0 chr4_random 3327178 3327480 -15524333 + AluSx SINE Alu 1 303 -9 1257 183 77 128 chr4_random 3327480 3327605 -15524208 - L1MC4 LINE L1 -337 7705 7575 274 218 102 91 chr4_random 3327733 3328008 -15523805 - L1ME4a LINE L1 -1 6120 5843 270 0 0 0 chr4_random 3328479 3328509 -15523304 + (TA)n Simple_repeat Simple_repeat 1 30 0 2615 40 0 0 chr4_random 3328544 3328844 -15522969 - AluY SINE Alu -11 300 1 322 322 72 33 chr4_random 3330237 3330417 -15521396 - MIR SINE MIR -29 233 47 208 299 103 21 chr4_random 3330749 3330846 -15520967 + L2 LINE L2 3167 3271 -1 10550 60 12 15 chr4_random 3331592 3332974 -15518839 + SVA Other Other 3 1379 -7 205 132 26 0 chr4_random 3335973 3336011 -15515802 - L2 LINE L2 -1 3312 3274 751 288 22 18 chr4_random 3336028 3336250 -15515563 + MIR SINE MIR 4 226 -36 304 312 56 0 chr4_random 3336619 3336744 -15515069 - MIR SINE MIR -49 213 82 877 235 120 50 chr4_random 3336750 3337108 -15514705 - MLT1J2 LTR MaLR -10 440 58 252 313 0 0 chr4_random 3337131 3337211 -15514602 - MIR SINE MIR -177 85 6 642 318 15 10 chr4_random 3338051 3338250 -15513563 + MLT1I LTR MaLR 8 207 -202 802 245 96 66 chr4_random 3338250 3338689 -15513124 + MLT1H LTR MaLR 3 545 -4 602 226 11 88 chr4_random 3338725 3338828 -15512985 + MLT1I LTR MaLR 243 328 -81 1645 110 135 39 chr4_random 3338828 3339109 -15512704 + AluSg SINE Alu 1 308 -2 602 226 11 88 chr4_random 3339109 3339186 -15512627 + MLT1I LTR MaLR 328 409 0 277 299 24 31 chr4_random 3339390 3339517 -15512296 + MLT1I LTR MaLR 264 389 -20 291 175 0 0 chr4_random 3340953 3341010 -15510803 + A-rich Low_complexity Low_complexity 1 57 0 239 302 77 41 chr4_random 3341549 3341718 -15510095 + L2 LINE L2 2805 2979 -293 714 162 28 42 chr4_random 3341924 3342066 -15509747 - MLT1F LTR MaLR 0 542 403 331 251 57 34 chr4_random 3342417 3342592 -15509221 + L1MC4 LINE L1 7864 8042 0 377 238 0 0 chr4_random 3342690 3342774 -15509039 - MLT1J2 LTR MaLR -13 437 354 502 284 47 6 chr4_random 3342876 3343045 -15508768 - MLT1J2 LTR MaLR -272 178 3 22 0 0 0 chr4_random 3344138 3344160 -15507653 + AT_rich Low_complexity Low_complexity 1 22 0 2561 50 0 3 chr4_random 3344162 3344461 -15507352 + AluY SINE Alu 1 298 -13 697 112 231 15 chr4_random 3344485 3344619 -15507194 + THE1C LTR MaLR 1 163 -212 512 47 0 0 chr4_random 3344621 3344685 -15507128 + (GTTTG)n Simple_repeat Simple_repeat 5 68 0 316 310 185 8 chr4_random 3345518 3345684 -15506129 + MIR SINE MIR 1 189 -73 662 82 10 0 chr4_random 3345820 3345918 -15505895 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 1140 175 18 22 chr4_random 3345998 3346221 -15505592 + L1MB3 LINE L1 5955 6176 -7 650 311 28 22 chr4_random 3346245 3346425 -15505388 + MER91A DNA MER1_type 3 183 -13 187 346 79 0 chr4_random 3346440 3346541 -15505272 - MIR SINE MIR -65 197 89 793 258 66 16 chr4_random 3347677 3347921 -15503892 - MIR SINE MIR 0 262 7 924 219 41 74 chr4_random 3348892 3349077 -15502736 - MLT1H1 LTR MaLR -284 271 141 1513 152 155 17 chr4_random 3349077 3349373 -15502440 - MER1B DNA MER1_type 0 337 1 924 219 41 74 chr4_random 3349373 3349507 -15502306 - MLT1H1 LTR MaLR -414 141 4 1137 139 0 17 chr4_random 3349825 3349997 -15501816 + AluJo SINE Alu 122 290 -22 3085 136 12 57 chr4_random 3350485 3350662 -15501151 - L1MB3 LINE L1 -2 6181 5998 2236 109 0 3 chr4_random 3350662 3350965 -15500848 - AluSg1 SINE Alu -7 302 1 3085 136 12 57 chr4_random 3350965 3351370 -15500443 - L1MB3 LINE L1 -185 5998 5625 249 283 195 0 chr4_random 3351595 3351708 -15500105 + L2 LINE L2 3178 3312 -1 460 293 133 26 chr4_random 3352269 3352539 -15499274 + L2 LINE L2 3009 3307 -6 1788 185 0 3 chr4_random 3352539 3352842 -15498971 + AluJb SINE Alu 1 302 -10 1559 197 91 11 chr4_random 3353051 3353426 -15498387 - Charlie1b DNA MER1_type -118 405 1 385 272 50 90 chr4_random 3353829 3354130 -15497683 + HAL1 LINE L1 629 917 -1590 1560 256 82 26 chr4_random 3354176 3354874 -15496939 + HAL1 LINE L1 1032 1768 -739 1239 261 154 13 chr4_random 3354874 3355349 -15496464 + MLT1F LTR MaLR 1 542 0 337 300 43 71 chr4_random 3355387 3355527 -15496286 + HAL1 LINE L1 1810 1945 -562 5555 85 24 36 chr4_random 3355763 3357261 -15494552 - SVA Other Other -518 1082 48 207 0 0 0 chr4_random 3357269 3357292 -15494521 + (GGGAGA)n Simple_repeat Simple_repeat 1 23 0 336 159 11 34 chr4_random 3357441 3357529 -15494284 + CT-rich Low_complexity Low_complexity 1 86 0 1359 141 5 33 chr4_random 3359645 3359858 -15491955 + AluJo SINE Alu 86 292 -20 360 291 55 8 chr4_random 3360652 3360779 -15491034 - MIR SINE MIR -1 261 129 186 260 20 0 chr4_random 3361104 3361154 -15490659 + MIR3 SINE MIR 110 160 -48 995 170 23 12 chr4_random 3361155 3361326 -15490487 - MER58B DNA MER1_type -1 340 168 700 161 70 11 chr4_random 3361315 3361337 -15490476 + MER33 DNA MER1_type 34 53 -2532 * 5681 54 14 0 chr4_random 3361337 3362002 -15489811 + L1PA6 LINE L1 5477 6150 -4 700 161 70 11 chr4_random 3362002 3362165 -15489648 + MER33 DNA MER1_type 53 230 -94 779 268 59 63 chr4_random 3362831 3363340 -15488473 - MLT1K LTR MaLR -10 578 3 266 207 54 108 chr4_random 3363361 3363472 -15488341 - MIR SINE MIR -46 216 112 1035 266 104 18 chr4_random 3363534 3363929 -15487884 - L3 LINE CR1 -512 1065 637 303 298 105 0 chr4_random 3363920 3364044 -15487769 + L3 LINE CR1 535 671 -906 * 504 267 130 6 chr4_random 3367738 3367899 -15483914 + MIR SINE MIR 8 188 -74 1158 157 12 15 chr4_random 3367910 3368187 -15483626 + L1PA16 LINE L1 5853 6161 -2 435 52 0 0 chr4_random 3368561 3368619 -15483194 + (TG)n Simple_repeat Simple_repeat 1 58 0 211 211 19 0 chr4_random 3368637 3368689 -15483124 + (CA)n Simple_repeat Simple_repeat 2 54 0 377 167 22 11 chr4_random 3370528 3370618 -15481195 + L3b LINE CR1 1327 1417 -166 21 36 0 0 chr4_random 3370964 3370992 -15480821 + AT_rich Low_complexity Low_complexity 1 28 0 2319 126 6 0 chr4_random 3371480 3371836 -15479977 + L1PA16 LINE L1 5800 6157 -9 1310 297 51 24 chr4_random 3373866 3374549 -15477264 + L2 LINE L2 2541 3204 -109 1243 276 134 17 chr4_random 3374549 3375079 -15476734 + MLT1G1 LTR MaLR 4 595 0 1310 297 51 24 chr4_random 3375079 3375121 -15476692 + L2 LINE L2 3204 3243 -70 2781 136 19 2 chr4_random 3375121 3375540 -15476273 - MSTB LTR MaLR 0 426 1 1310 297 51 24 chr4_random 3375540 3375569 -15476244 + L2 LINE L2 3243 3305 -8 219 69 0 0 chr4_random 3376045 3376074 -15475739 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 254 295 0 0 chr4_random 3376975 3377036 -15474777 + MLT1G1 LTR MaLR 438 498 -97 275 172 62 0 chr4_random 3377079 3377143 -15474670 - MLT2A2 LTR ERVL 0 453 386 11544 87 4 50 chr4_random 3377151 3377550 -15474263 + L1P3 LINE L1 11 426 -6035 246 32 0 0 chr4_random 3377550 3377581 -15474232 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 360 123 18 0 chr4_random 3377586 3377643 -15474170 - AluS SINE Alu -21 281 224 11544 87 4 50 chr4_random 3377643 3378979 -15472834 + L1P3 LINE L1 430 1727 -4734 6686 147 27 5 chr4_random 3379098 3381227 -15470586 - L1MA5A LINE L1 -101 6196 4019 367 258 50 104 chr4_random 3381234 3381416 -15470397 - MIR SINE MIR -87 175 4 261 232 8 28 chr4_random 3381573 3381654 -15470159 - MER5A DNA MER1_type -6 172 94 262 331 52 19 chr4_random 3381874 3382028 -15469785 + MER5A DNA MER1_type 16 174 -15 419 287 105 29 chr4_random 3383115 3383324 -15468489 + MIR SINE MIR 35 259 -3 189 107 0 0 chr4_random 3384920 3384948 -15466865 + (T)n Simple_repeat Simple_repeat 1 28 0 298 294 49 0 chr4_random 3386242 3386344 -15465469 - L2 LINE L2 -30 3242 3136 741 243 55 41 chr4_random 3386546 3386602 -15465211 - L1ME4a LINE L1 -209 5912 5858 1968 128 3 7 chr4_random 3386602 3386884 -15464929 - AluSx SINE Alu -18 294 14 741 243 55 41 chr4_random 3386884 3387189 -15464624 - L1ME4a LINE L1 -263 5858 5546 258 56 0 0 chr4_random 3387395 3387431 -15464382 + (T)n Simple_repeat Simple_repeat 1 36 0 1259 214 58 47 chr4_random 3387604 3387963 -15463850 + MLT1A1 LTR MaLR 1 363 -2 1017 74 153 6 chr4_random 3387964 3388140 -15463673 + PABL_A LTR ERV1 1 202 -458 308 268 16 71 chr4_random 3388502 3388629 -15463184 - L1ME4a LINE L1 -690 5431 5312 601 170 49 139 chr4_random 3389107 3389330 -15462483 + MER20 DNA MER1_type 1 203 -16 2507 60 0 0 chr4_random 3391560 3391879 -15459934 + PABL_A LTR ERV1 340 658 -2 881 121 6 60 chr4_random 3393441 3393607 -15458206 - THE1C LTR MaLR -218 157 1 201 74 0 0 chr4_random 3393897 3393924 -15457889 + (GA)n Simple_repeat Simple_repeat 2 28 0 678 347 60 31 chr4_random 3394187 3394797 -15457016 - L2 LINE L2 -163 3109 2471 219 313 116 9 chr4_random 3397129 3397241 -15454572 - MIR SINE MIR -11 251 128 570 279 60 22 chr4_random 3398682 3398865 -15452948 - MIR SINE MIR -63 199 10 1854 174 22 16 chr4_random 3399084 3399257 -15452556 + MLT1A1 LTR MaLR 1 172 -193 3048 79 67 2 chr4_random 3399257 3399293 -15452520 - MLT2A1 LTR ERVL 0 444 412 413 66 16 0 chr4_random 3399293 3399354 -15452459 + (TA)n Simple_repeat Simple_repeat 2 63 0 3048 79 67 2 chr4_random 3399354 3399734 -15452079 - MLT2A1 LTR ERVL -32 412 1 1854 174 22 16 chr4_random 3399734 3399923 -15451890 + MLT1A1 LTR MaLR 172 365 0 2022 138 75 27 chr4_random 3400485 3400861 -15450952 + MSTA LTR MaLR 1 394 -34 337 301 52 37 chr4_random 3401628 3401764 -15450049 - L1M LINE L1 -719 5402 5265 1323 261 103 75 chr4_random 3402027 3403065 -15448748 - L2 LINE L2 0 3313 2175 849 133 0 8 chr4_random 3403089 3403209 -15448604 + FLAM_C SINE Alu 1 119 -24 603 224 125 9 chr4_random 3403320 3403552 -15448261 + L1ME LINE L1 5556 5814 -307 202 227 0 0 chr4_random 3407512 3407556 -15444257 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 198 167 0 0 chr4_random 3407592 3407628 -15444185 + (TA)n Simple_repeat Simple_repeat 1 36 0 871 153 0 0 chr4_random 3407636 3407760 -15444053 - AluJb SINE Alu -188 124 1 397 307 39 33 chr4_random 3407869 3408022 -15443791 + MIR3 SINE MIR 3 156 -52 858 164 10 63 chr4_random 3408129 3408336 -15443477 - MLT1D LTR MaLR -305 200 5 278 401 0 7 chr4_random 3408342 3408479 -15443334 + L2 LINE L2 2826 2961 -353 590 245 52 36 chr4_random 3408534 3408726 -15443087 + L2 LINE L2 3117 3311 -2 2228 115 0 13 chr4_random 3408816 3409129 -15442684 + AluSg SINE Alu 1 309 -1 481 331 17 12 chr4_random 3409154 3409326 -15442487 - MIR SINE MIR -67 195 23 479 238 62 12 chr4_random 3409839 3409999 -15441814 + MER21B LTR ERV1 635 802 -61 496 216 206 81 chr4_random 3462057 3462353 -15389460 - MLT1J2 LTR MaLR -24 426 94 261 285 139 29 chr4_random 3464111 3464248 -15387565 + MIR SINE MIR 79 230 -32 185 207 0 171 chr4_random 3464283 3464365 -15387448 + L2 LINE L2 3238 3305 -8 27 29 0 0 chr4_random 3464599 3464633 -15387180 + AT_rich Low_complexity Low_complexity 1 34 0 1495 192 0 39 chr4_random 3464848 3465155 -15386658 - AluJb SINE Alu -15 297 3 3789 261 28 11 chr4_random 3465979 3467112 -15384701 - L1MEc LINE L1 -5222 1174 22 207 258 0 32 chr4_random 3467754 3467816 -15383997 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 932 241 209 47 chr4_random 3468514 3468941 -15382872 + MLT1H LTR MaLR 6 544 -5 3477 168 152 31 chr4_random 3470012 3470749 -15381064 - LTR1B LTR ERV1 0 826 1 256 357 16 24 chr4_random 3470886 3471012 -15380801 + MER5A DNA MER1_type 63 187 -2 1084 202 19 66 chr4_random 3472695 3473012 -15378801 + L1MC4a LINE L1 5719 6020 -1788 22 0 0 0 chr4_random 3473074 3473096 -15378717 + AT_rich Low_complexity Low_complexity 1 22 0 502 227 108 43 chr4_random 3473103 3473288 -15378525 - L1ME3A LINE L1 -8 6162 5966 615 203 8 0 chr4_random 3473297 3473412 -15378401 - LTR37A LTR ERV1 0 426 311 418 132 198 11 chr4_random 3473412 3473503 -15378310 + MLT2B2 LTR ERVL 1 108 -407 411 220 80 30 chr4_random 3473606 3473706 -15378107 - MER58A DNA MER1_type -2 105 1 * 591 260 62 55 chr4_random 3473706 3473988 -15377825 + MER110A LTR ERV1 46 329 -139 283 284 16 16 chr4_random 3473989 3474092 -15377721 + MLT2B1 LTR ERVL 262 368 -151 434 221 28 17 chr4_random 3474162 3474282 -15377531 + MER110A LTR ERV1 346 464 -4 442 224 88 16 chr4_random 3474307 3474432 -15377381 - L1ME3A LINE L1 -445 5725 5592 1384 165 46 46 chr4_random 3475531 3475834 -15375979 - AluJb SINE Alu -9 303 1 2854 12 0 12 chr4_random 3476546 3476865 -15374948 - AluYb8 SINE Alu -3 315 1 363 250 67 72 chr4_random 3477144 3477324 -15374489 - LTR33 LTR ERVL 0 521 343 565 268 14 7 chr4_random 3477451 3477593 -15374220 - LTR33 LTR ERVL -378 143 1 284 270 0 0 chr4_random 3478243 3478306 -15373507 - Charlie8 DNA MER1_type -2261 156 94 1067 204 18 22 chr4_random 3478772 3478998 -15372815 - L1 LINE L1 -1022 5124 4900 712 169 24 0 chr4_random 3478998 3479122 -15372691 - LTR47A LTR ERVL 0 452 326 3281 198 13 7 chr4_random 3479371 3480049 -15371764 - L1 LINE L1 -1242 4904 4223 * 4276 175 42 4 chr4_random 3480029 3480967 -15370846 + L1MA9 LINE L1 5084 6055 -257 2567 146 2 13 chr4_random 3481067 3481464 -15370349 - Tigger1 DNA MER2_type -2024 394 2 234 292 56 42 chr4_random 3481724 3481796 -15370017 - L2 LINE L2 0 3272 3200 220 151 19 19 chr4_random 3481879 3481932 -15369881 + (TATG)n Simple_repeat Simple_repeat 3 55 0 786 271 42 5 chr4_random 3481936 3482128 -15369685 - MLT2E LTR ERVL 0 628 430 613 289 6 6 chr4_random 3482166 3482332 -15369481 - MLT2E LTR ERVL -303 325 160 204 40 0 0 chr4_random 3482501 3482526 -15369287 + (CA)n Simple_repeat Simple_repeat 2 26 0 186 133 0 0 chr4_random 3483347 3483377 -15368436 + (T)n Simple_repeat Simple_repeat 1 30 0 307 245 31 20 chr4_random 3484438 3484536 -15367277 + MIR3 SINE MIR 88 186 -22 212 193 123 18 chr4_random 3484766 3484823 -15366990 - MIR3 SINE MIR -2 206 144 1061 119 26 31 chr4_random 3484940 3485134 -15366679 + L1MA9 LINE L1 6089 6281 -31 444 281 44 0 chr4_random 3485885 3485999 -15365814 - L2 LINE L2 -6 3266 3148 2276 124 0 0 chr4_random 3486175 3486481 -15365332 + AluSq SINE Alu 1 306 -7 10457 132 13 15 chr4_random 3486726 3487902 -15363911 - Tigger1 DNA MER2_type 0 2418 1241 2102 115 11 3 chr4_random 3487902 3488189 -15363624 + AluSg1 SINE Alu 1 289 -20 180 0 0 0 chr4_random 3488192 3488212 -15363601 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 216 0 0 0 chr4_random 3488211 3488235 -15363578 + (GA)n Simple_repeat Simple_repeat 2 25 0 10457 132 13 15 chr4_random 3488212 3488680 -15363133 - Tigger1 DNA MER2_type -1179 1239 796 2089 125 3 3 chr4_random 3488681 3488977 -15362836 - AluSx SINE Alu -16 296 1 449 277 71 43 chr4_random 3490506 3490690 -15361123 + MIR SINE MIR 7 195 -67 212 226 38 0 chr4_random 3490857 3490910 -15360903 - L2 LINE L2 -233 3080 3026 21 57 0 0 chr4_random 3493161 3493196 -15358617 + AT_rich Low_complexity Low_complexity 1 35 0 2592 188 50 4 chr4_random 3493380 3493863 -15357950 - MLT1D LTR MaLR 0 505 1 923 96 28 22 chr4_random 3495257 3495435 -15356378 + CT-rich Low_complexity Low_complexity 2 180 0 1025 138 1 53 chr4_random 3495630 3495850 -15355963 + MLT1C LTR MaLR 192 459 -8 1582 277 45 10 chr4_random 3497221 3497745 -15354068 - MLT1G1 LTR MaLR 0 595 1 505 248 7 46 chr4_random 3499669 3499822 -15351991 + L2 LINE L2 3167 3313 0 3450 161 26 0 chr4_random 3500596 3501136 -15350677 + MER41C LTR ERV1 1 554 0 219 219 0 0 chr4_random 3504122 3504163 -15347650 + GA-rich Low_complexity Low_complexity 2 42 0 2199 65 14 0 chr4_random 3504638 3504942 -15346871 + AluY SINE Alu 2 309 0 3778 99 99 35 chr4_random 3505473 3505664 -15346149 - PABL_B LTR ERV1 0 667 490 3076 119 9 0 chr4_random 3505664 3506094 -15345719 - MER57B LTR ERV1 0 434 1 3778 99 99 35 chr4_random 3506094 3506528 -15345285 - PABL_B LTR ERV1 -177 490 2 625 256 107 11 chr4_random 3507857 3508096 -15343717 + MLT1L LTR MaLR 243 589 -26 301 297 47 16 chr4_random 3508150 3508278 -15343535 - L3b LINE CR1 -261 1322 1191 2752 155 19 51 chr4_random 3509193 3509723 -15342090 - L1MB7 LINE L1 -1 6183 5671 2042 165 58 62 chr4_random 3509723 3509951 -15341862 + MER31B LTR ERV1 1 228 -238 2959 119 26 7 chr4_random 3509951 3510371 -15341442 - MSTA LTR MaLR 0 428 1 2042 165 58 62 chr4_random 3510371 3510609 -15341204 + MER31B LTR ERV1 228 465 -1 1311 149 1 5 chr4_random 3510609 3510822 -15340991 - L1MB7 LINE L1 -473 5658 5471 1560 184 35 6 chr4_random 3511306 3511728 -15340085 + MER21B LTR ERV1 1 473 -390 25 0 0 0 chr4_random 3511738 3511763 -15340050 + AT_rich Low_complexity Low_complexity 1 25 0 1980 150 60 38 chr4_random 3513889 3514256 -15337557 - THE1C LTR MaLR 0 375 1 2247 174 16 13 chr4_random 3514436 3514822 -15336991 + MLT1B LTR MaLR 1 387 -3 3041 221 60 19 chr4_random 3515123 3515944 -15335869 + MER97a DNA MER1_type? 41 894 0 206 379 168 25 chr4_random 3516165 3516558 -15335255 - L2 LINE L2 -5 3267 2819 1610 164 7 4 chr4_random 3516847 3517121 -15334692 + AluSx SINE Alu 35 309 -3 22 0 0 0 chr4_random 3517335 3517357 -15334456 + AT_rich Low_complexity Low_complexity 1 22 0 250 135 39 0 chr4_random 3517438 3517490 -15334323 - HAL1 LINE L1 -124 2383 2330 274 290 101 43 chr4_random 3517871 3518078 -15333735 - HAL1 LINE L1 -2288 219 1 259 319 25 51 chr4_random 3518146 3518303 -15333510 - MIR SINE MIR -52 210 58 529 291 51 27 chr4_random 3519503 3519761 -15332052 + MIR SINE MIR 3 262 0 2073 98 20 52 chr4_random 3519949 3520254 -15331559 + AluSp SINE Alu 2 296 -17 362 350 83 47 chr4_random 3520586 3521058 -15330755 - L2 LINE L2 -337 2977 2489 1922 137 0 14 chr4_random 3521621 3521906 -15329907 + AluJb SINE Alu 2 282 -30 469 227 25 8 chr4_random 3523384 3523503 -15328310 + L2 LINE L2 3152 3272 0 2063 109 33 0 chr4_random 3523703 3524019 -15327794 - AluSg SINE Alu 0 325 1 834 216 67 5 chr4_random 3524730 3524924 -15326889 + MER3 DNA MER1_type 1 206 -3 208 235 12 53 chr4_random 3526694 3526777 -15325036 - MER5A DNA MER1_type -4 175 95 301 272 201 12 chr4_random 3527311 3527480 -15324333 + MIR SINE MIR 51 251 -11 206 178 22 0 chr4_random 3528686 3528731 -15323082 + A-rich Low_complexity Low_complexity 3 48 0 207 162 0 0 chr4_random 3529921 3529958 -15321855 + CT-rich Low_complexity Low_complexity 1 37 0 234 91 0 0 chr4_random 3530103 3530136 -15321677 + (T)n Simple_repeat Simple_repeat 1 33 0 225 333 0 0 chr4_random 3531640 3531712 -15320101 - L2 LINE L2 0 3313 3242 348 299 28 7 chr4_random 3532662 3532806 -15319007 - L2 LINE L2 -270 3002 2856 213 172 60 129 chr4_random 3533035 3533151 -15318662 + L2 LINE L2 3206 3313 0 474 248 168 27 chr4_random 3533481 3533666 -15318147 - LTR33 LTR ERVL -249 274 71 24 0 0 0 chr4_random 3534053 3534077 -15317736 + AT_rich Low_complexity Low_complexity 1 24 0 2646 153 57 7 chr4_random 3535765 3536171 -15315642 - MSTB LTR MaLR 0 426 1 2291 102 3 3 chr4_random 3536252 3536565 -15315248 - AluSp SINE Alu 0 313 1 996 169 45 0 chr4_random 3536703 3536880 -15314933 + MLT1B LTR MaLR 1 185 -205 411 281 30 44 chr4_random 3536994 3537129 -15314684 + AluJb SINE Alu 179 311 -1 202 333 83 10 chr4_random 3537567 3537663 -15314150 + L2 LINE L2 3210 3312 -1 786 189 32 68 chr4_random 3538997 3539187 -15312626 + MER20 DNA MER1_type 2 184 -35 1120 251 79 55 chr4_random 3539243 3539750 -15312063 + MER113 DNA MER1_type? 3 521 0 257 254 17 0 chr4_random 3541517 3541576 -15310237 - MIR3 SINE MIR -5 203 144 310 371 71 16 chr4_random 3543655 3543908 -15307905 + L3 LINE CR1 533 799 -778 272 182 15 61 chr4_random 3544260 3544326 -15307487 - L2 LINE L2 0 3272 3210 675 319 193 25 chr4_random 3544460 3545548 -15306265 - L2 LINE L2 -272 3000 1733 208 311 33 0 chr4_random 3545695 3545756 -15306057 + L3 LINE CR1 1058 1120 -457 194 91 30 0 chr4_random 3546282 3546315 -15305498 + GA-rich Low_complexity Low_complexity 3 36 0 233 276 110 31 chr4_random 3546384 3546547 -15305266 + MIR SINE MIR 87 262 0 192 245 143 61 chr4_random 3546796 3546894 -15304919 + L2 LINE L2 2651 2756 -558 25 51 0 0 chr4_random 3548673 3548712 -15303101 + AT_rich Low_complexity Low_complexity 1 39 0 739 178 39 29 chr4_random 3550009 3550189 -15301624 - L1M4c LINE L1 -3848 2550 2364 2285 158 21 18 chr4_random 3550189 3550570 -15301243 - LTR8 LTR ERV1 0 691 310 1076 56 0 21 chr4_random 3550587 3550729 -15301084 + LTR17 LTR ERV1 1 139 -641 * 37746 57 3 1 chr4_random 3550724 3555248 -15296565 + HERV17 LTR ERV1 4091 8624 -2 5951 83 44 4 chr4_random 3555250 3556000 -15295813 + LTR17 LTR ERV1 1 780 0 1903 121 44 41 chr4_random 3556007 3556322 -15295491 - LTR8 LTR ERV1 -375 316 1 2319 226 95 17 chr4_random 3556322 3556558 -15295255 - L1M4c LINE L1 -4167 2396 2180 2123 132 0 3 chr4_random 3556558 3556862 -15294951 + AluSg SINE Alu 1 303 -7 2319 226 95 17 chr4_random 3556862 3557386 -15294427 - L1M4c LINE L1 -4383 2180 1429 305 282 13 13 chr4_random 3557628 3557706 -15294107 + L2 LINE L2 3227 3304 -9 211 275 0 14 chr4_random 3557723 3557792 -15294021 + CT-rich Low_complexity Low_complexity 1 68 0 1423 228 101 52 chr4_random 3558511 3558976 -15292837 + MLT1D LTR MaLR 1 488 -17 299 308 58 87 chr4_random 3559003 3559279 -15292534 + L2 LINE L2 2988 3255 -17 25 0 0 0 chr4_random 3561979 3562004 -15289809 + AT_rich Low_complexity Low_complexity 1 25 0 4170 190 44 13 chr4_random 3562760 3563659 -15288154 + L1MD2 LINE L1 5213 6133 -226 189 0 0 0 chr4_random 3563670 3563691 -15288122 + (CA)n Simple_repeat Simple_repeat 2 22 0 216 0 0 0 chr4_random 3563692 3563716 -15288097 + (CG)n Simple_repeat Simple_repeat 2 25 0 203 179 26 0 chr4_random 3563973 3564012 -15287801 - L3 LINE CR1 -21 1556 1517 3664 215 36 6 chr4_random 3564531 3565391 -15286422 + MER63C DNA MER1_type 4 930 0 489 252 0 9 chr4_random 3565395 3565506 -15286307 + L2 LINE L2 2413 2522 -792 3353 263 198 21 chr4_random 3565510 3567114 -15284699 + L2 LINE L2 1385 3305 -8 1008 183 6 0 chr4_random 3567131 3567300 -15284513 - MER45A DNA AcHobo -8 170 1 678 257 7 0 chr4_random 3567309 3567453 -15284360 + L2 LINE L2 2512 2656 -658 699 275 140 38 chr4_random 3567613 3567955 -15283858 + L2 LINE L2 2937 3313 0 339 285 77 34 chr4_random 3568328 3568558 -15283255 + HAL1b LINE L1 212 1536 -923 273 260 19 10 chr4_random 3569252 3569356 -15282457 + L1MA4 LINE L1 3557 3661 -3904 358 258 40 99 chr4_random 3569373 3569625 -15282188 + L1MA4 LINE L1 3696 3932 -3633 326 275 90 52 chr4_random 3569679 3569890 -15281923 + L1MA4 LINE L1 4376 4594 -2971 428 347 13 2 chr4_random 3570100 3570432 -15281381 + L1MA4 LINE L1 4863 5196 -2369 443 234 48 40 chr4_random 3570528 3570652 -15281161 + L2 LINE L2 3186 3310 -3 424 173 200 87 chr4_random 3570741 3570891 -15280922 + MER63A DNA MER1_type 44 210 0 3311 87 2 13 chr4_random 3570934 3571383 -15280430 - MLT2A1 LTR ERVL 0 444 1 5239 158 25 48 chr4_random 3571599 3572531 -15279282 + L1MA4 LINE L1 5535 6486 -1233 2149 143 10 0 chr4_random 3572531 3572839 -15278974 + AluSx SINE Alu 1 311 -1 5239 158 25 48 chr4_random 3572839 3573473 -15278340 + L1MA4 LINE L1 6486 7077 -642 230 65 0 0 chr4_random 3573473 3573504 -15278309 + U2 snRNA snRNA 1 31 -157 5239 158 25 48 chr4_random 3573504 3574123 -15277690 + L1MA4 LINE L1 7077 7708 -11 1421 205 18 12 chr4_random 3574157 3574488 -15277325 - L1 LINE L1 -1916 4412 4080 * 2300 233 29 29 chr4_random 3574486 3575268 -15276545 - L1 LINE L1 -4153 2175 1394 2320 99 79 15 chr4_random 3575269 3575611 -15276202 + THE1B LTR MaLR 1 364 0 3598 84 20 2 chr4_random 3575611 3576122 -15275691 + THE1B-int LTR MaLR 1 520 -1060 1997 215 16 10 chr4_random 3576130 3577222 -15274591 - L1 LINE L1 -4152 1176 30 21 36 0 0 chr4_random 3578066 3578094 -15273719 + AT_rich Low_complexity Low_complexity 1 28 0 1391 170 116 7 chr4_random 3579167 3579443 -15272370 + AluJo SINE Alu 2 307 -5 1732 33 5 5 chr4_random 3580410 3580623 -15271190 + L1PA3 LINE L1 5940 6152 -3 29 0 0 0 chr4_random 3580623 3580652 -15271161 + AT_rich Low_complexity Low_complexity 1 29 0 689 291 19 5 chr4_random 3580778 3580984 -15270829 - MIR SINE MIR -34 228 20 288 298 48 39 chr4_random 3581072 3581176 -15270637 + MIR SINE MIR 20 124 -138 1110 170 70 9 chr4_random 3581177 3581407 -15270406 + Tigger3b DNA MER2_type 1 244 -987 1609 115 71 0 chr4_random 3581516 3581785 -15270028 + Tigger3b DNA MER2_type 258 545 -686 2806 41 0 0 chr4_random 3582245 3582585 -15269228 - L1PA4 LINE L1 -2 6153 5814 7663 22 9 0 chr4_random 3582591 3583878 -15267935 - L1PA4 LINE L1 -3 6152 4861 3750 126 37 16 chr4_random 3583878 3584559 -15267254 + Tigger3b DNA MER2_type 538 1232 0 493 286 43 7 chr4_random 3584740 3584880 -15266933 - MIR SINE MIR -108 154 10 29 47 0 0 chr4_random 3585223 3585266 -15266547 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4_random 3585331 3585352 -15266461 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr4_random 3585403 3585440 -15266373 + AT_rich Low_complexity Low_complexity 1 37 0 366 88 44 0 chr4_random 3585671 3585739 -15266074 + (TG)n Simple_repeat Simple_repeat 2 72 0 325 103 29 0 chr4_random 3586117 3586185 -15265628 + (TA)n Simple_repeat Simple_repeat 1 70 0 2155 90 29 0 chr4_random 3586569 3586867 -15264946 + AluSc SINE Alu 1 309 0 271 279 62 39 chr4_random 3588211 3588340 -15263473 - L2 LINE L2 0 3313 3182 489 284 157 66 chr4_random 3588558 3589146 -15262667 + L2 LINE L2 2494 3193 -120 234 0 0 0 chr4_random 3589146 3589172 -15262641 + (CA)n Simple_repeat Simple_repeat 2 27 0 489 284 157 66 chr4_random 3589172 3589305 -15262508 + L2 LINE L2 3193 3313 0 450 332 79 20 chr4_random 3589409 3589611 -15262202 + MIR SINE MIR 1 214 -48 423 286 67 43 chr4_random 3589618 3589771 -15262042 - MIR SINE MIR 0 262 99 2123 95 7 14 chr4_random 3589771 3590067 -15261746 + AluSg SINE Alu 1 294 -16 423 286 67 43 chr4_random 3590067 3590168 -15261645 - MIR SINE MIR -163 99 2 454 345 84 14 chr4_random 3590425 3590700 -15261113 - L1MEd LINE L1 -5320 799 506 225 0 0 0 chr4_random 3591101 3591126 -15260687 + (T)n Simple_repeat Simple_repeat 1 25 0 200 411 31 18 chr4_random 3593054 3593278 -15258535 - L2 LINE L2 -525 2789 2563 1561 164 76 6 chr4_random 3593410 3593740 -15258073 - MER47A DNA MER2_type -1 365 13 597 284 28 0 chr4_random 3594890 3595031 -15256782 + MIR3 SINE MIR 14 158 -50 555 282 0 5 chr4_random 3595383 3595571 -15256242 - L1MC4 LINE L1 -118 7924 7738 1389 205 68 9 chr4_random 3595580 3595916 -15255897 - L1MC4 LINE L1 -223 7819 7464 316 286 61 121 chr4_random 3595921 3596152 -15255661 - L1MD3 LINE L1 -988 6820 6581 618 244 63 14 chr4_random 3596165 3596386 -15255427 - L1MC4 LINE L1 -1360 6682 6451 186 133 0 0 chr4_random 3597519 3597549 -15254264 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 451 243 48 0 chr4_random 3597656 3597759 -15254054 - MER91C DNA MER1_type 0 140 33 334 269 11 0 chr4_random 3598581 3598674 -15253139 - MIR SINE MIR -10 252 159 244 227 15 0 chr4_random 3598674 3598740 -15253073 - HsTC2 DNA Tc2 -6 1892 1826 303 176 27 14 chr4_random 3598963 3599037 -15252776 - HsTC2 DNA Tc2 -1822 76 2 397 291 68 8 chr4_random 3599037 3599154 -15252659 - MIR SINE MIR -105 157 34 23 0 0 0 chr4_random 3599733 3599756 -15252057 + AT_rich Low_complexity Low_complexity 1 23 0 1482 75 41 75 chr4_random 3599758 3600026 -15251787 - LTR12 LTR ERV1 0 714 456 1456 188 89 25 chr4_random 3600029 3600513 -15251300 - pTR5 LTR ERV1 -1181 1257 743 6126 72 6 0 chr4_random 3600514 3601423 -15250390 - L1PA8A LINE L1 -27 6419 5506 258 32 0 0 chr4_random 3601423 3601454 -15250359 + (T)n Simple_repeat Simple_repeat 1 31 0 2893 8 0 11 chr4_random 3601454 3601812 -15250001 - L1HS LINE L1 0 6155 5802 28694 22 0 0 chr4_random 3601912 3605897 -15245916 - L1P1 LINE L1 -346 5809 1825 23528 152 10 15 chr4_random 3605896 3606794 -15245019 - L1PA8A LINE L1 -939 5522 4621 * 2185 107 3 7 chr4_random 3606794 3607092 -15244721 + AluSg SINE Alu 3 299 -11 23528 152 10 15 chr4_random 3607092 3610444 -15241369 - L1PA8A LINE L1 -1840 4621 1239 189 74 0 0 chr4_random 3610444 3610471 -15241342 + (TTG)n Simple_repeat Simple_repeat 1 27 0 23528 152 10 15 chr4_random 3610471 3611703 -15240110 - L1PA8A LINE L1 -5222 1239 3 23 78 0 0 chr4_random 3611726 3611777 -15240036 + AT_rich Low_complexity Low_complexity 1 51 0 200 313 0 62 chr4_random 3612256 3612336 -15239477 - L2 LINE L2 -8 3305 3231 217 273 30 30 chr4_random 3613766 3613832 -15237981 - L2 LINE L2 -19 3253 3188 388 290 200 19 chr4_random 3614075 3614230 -15237583 - MER5A DNA MER1_type -6 183 1 351 213 226 32 chr4_random 3615670 3615825 -15235988 + MER5A DNA MER1_type 4 188 -1 4334 143 35 33 chr4_random 3615959 3616814 -15234999 - L1MA5 LINE L1 0 6300 5444 725 140 0 39 chr4_random 3616818 3616967 -15234846 + MER21A LTR ERV1 459 681 -250 302 197 0 0 chr4_random 3616976 3617037 -15234776 + MER21A LTR ERV1 28 88 -843 2898 180 63 50 chr4_random 3617058 3617377 -15234436 + MER21A LTR ERV1 195 508 -423 2083 137 137 11 chr4_random 3617377 3617757 -15234056 - MSTA LTR MaLR 0 428 1 2898 180 63 50 chr4_random 3617757 3618136 -15233677 + MER21A LTR ERV1 508 902 -29 10155 210 39 23 chr4_random 3618143 3622491 -15229322 - L1MC/D LINE L1 -841 6518 1410 5389 65 0 3 chr4_random 3622491 3623180 -15228633 - L1PA7 LINE L1 -2 6152 5466 10155 210 39 23 chr4_random 3623180 3624612 -15227201 - L1MC/D LINE L1 -5949 1410 1 210 150 0 0 chr4_random 3624852 3624892 -15226921 + (TA)n Simple_repeat Simple_repeat 1 40 0 198 103 0 0 chr4_random 3625049 3625078 -15226735 + (TG)n Simple_repeat Simple_repeat 1 29 0 729 263 28 23 chr4_random 3625143 3625360 -15226453 + MER58A DNA MER1_type 6 223 -1 12508 212 83 18 chr4_random 3625999 3631086 -15220727 - L1PA16 LINE L1 0 7604 2182 317 313 0 0 chr4_random 3631321 3631420 -15220393 - L1PA16 LINE L1 -5399 2182 2084 1071 344 22 25 chr4_random 3631559 3632147 -15219666 - L1PA16 LINE L1 -6201 1373 788 831 186 7 0 chr4_random 3632172 3632312 -15219501 - FRAM SINE Alu -14 162 22 816 178 0 7 chr4_random 3632603 3632738 -15219075 - AluJb SINE Alu -178 134 1 798 280 27 31 chr4_random 3635458 3635719 -15216094 - MIR SINE MIR -2 260 1 2099 133 3 0 chr4_random 3635810 3636111 -15215702 - AluSx SINE Alu -10 302 1 379 252 97 104 chr4_random 3636143 3636544 -15215269 - MLT1J2 LTR MaLR -20 426 1 410 242 167 0 chr4_random 3636544 3636676 -15215137 - MIR SINE MIR -52 210 57 546 370 70 58 chr4_random 3636823 3637220 -15214593 + L2 LINE L2 2871 3272 0 198 284 88 59 chr4_random 3637354 3637456 -15214357 - L2 LINE L2 -25 3288 3184 3788 213 29 11 chr4_random 3637732 3638585 -15213228 + L1ME1 LINE L1 5294 6162 -4 277 153 119 0 chr4_random 3638749 3638808 -15213005 + MER112 DNA MER1_type 1 66 -194 722 325 21 4 chr4_random 3639143 3639386 -15212427 - MIR SINE MIR 0 262 16 249 304 32 92 chr4_random 3639413 3639696 -15212117 - L2 LINE L2 -736 2578 2313 260 333 29 0 chr4_random 3640103 3640208 -15211605 + L2 LINE L2 2866 2973 -299 556 207 254 18 chr4_random 3641551 3641720 -15210093 - MIR SINE MIR -3 259 51 991 307 104 24 chr4_random 3643235 3643658 -15208155 - MLT1J LTR MaLR -54 457 1 2413 313 109 8 chr4_random 3644028 3645085 -15206728 + L2 LINE L2 1225 2388 -926 591 318 149 40 chr4_random 3645157 3645724 -15206089 + L2 LINE L2 2687 3311 -2 28240 94 15 15 chr4_random 3646045 3649320 -15202493 + L1PA7 LINE L1 1072 4342 -1812 2452 70 7 0 chr4_random 3649320 3649620 -15202193 + AluY SINE Alu 1 302 -9 28240 94 15 15 chr4_random 3649620 3651428 -15200385 + L1PA7 LINE L1 4342 6149 -5 223 149 43 0 chr4_random 3651439 3651486 -15200327 + A-rich Low_complexity Low_complexity 5 53 0 1413 228 26 10 chr4_random 3651487 3651798 -15200015 - MER67B LTR ERV1 -256 405 90 583 192 66 78 chr4_random 3651792 3651913 -15199900 - MER67B LTR ERV1 -496 165 45 * 408 20 0 0 chr4_random 3651913 3651962 -15199851 + (TG)n Simple_repeat Simple_repeat 2 50 0 583 192 66 78 chr4_random 3651962 3652007 -15199806 - MER67B LTR ERV1 -616 45 1 569 204 28 0 chr4_random 3652007 3652087 -15199726 - MER67A LTR ERV1 -460 83 1 201 74 0 0 chr4_random 3652187 3652214 -15199599 + (A)n Simple_repeat Simple_repeat 1 27 0 1093 168 10 0 chr4_random 3653089 3653285 -15198528 + L1PB1 LINE L1 3 200 -6663 * 13416 120 72 8 chr4_random 3653265 3657022 -15194791 + L1PB1 LINE L1 620 6844 -23 1798 59 0 14 chr4_random 3657029 3657249 -15194564 - AluY SINE Alu -14 297 81 548 235 174 13 chr4_random 3658674 3658823 -15192990 + MER5A DNA MER1_type 9 181 -8 311 294 98 0 chr4_random 3659995 3660087 -15191726 + MER91C DNA MER1_type 2 102 -38 22 0 0 0 chr4_random 3660385 3660407 -15191406 + AT_rich Low_complexity Low_complexity 1 22 0 423 314 146 26 chr4_random 3660417 3660643 -15191170 + MIR SINE MIR 2 254 -8 627 236 40 0 chr4_random 3660930 3661078 -15190735 + MLT1I LTR MaLR 17 170 -239 458 186 116 23 chr4_random 3661137 3661266 -15190547 + MLT1I LTR MaLR 255 395 -14 1420 130 41 121 chr4_random 3662374 3662712 -15189101 + AluSx SINE Alu 1 311 -1 2345 91 0 0 chr4_random 3662893 3663189 -15188624 - AluSx SINE Alu -16 296 1 251 276 13 13 chr4_random 3663218 3663294 -15188519 - MIR3 SINE MIR -46 162 87 753 290 66 7 chr4_random 3663687 3663973 -15187840 + Tigger8 DNA MER2_type 14 316 -350 389 353 26 13 chr4_random 3664296 3664449 -15187364 + L2 LINE L2 3159 3313 0 597 249 83 21 chr4_random 3666577 3666770 -15185043 - MIR SINE MIR -30 232 28 237 195 0 0 chr4_random 3667213 3667254 -15184559 - MLT1L LTR MaLR -411 204 164 268 330 91 28 chr4_random 3667855 3668031 -15183782 - MER117 DNA MER1_type -5 192 6 430 257 105 29 chr4_random 3668063 3668234 -15183579 + MIR SINE MIR 9 192 -70 251 319 48 57 chr4_random 3668723 3669058 -15182755 + L1MC4a LINE L1 4787 5118 -1028 26 30 0 0 chr4_random 3669084 3669117 -15182696 + AT_rich Low_complexity Low_complexity 1 33 0 2126 115 3 3 chr4_random 3669170 3669474 -15182339 + AluSg SINE Alu 1 304 -6 235 133 67 33 chr4_random 3669501 3669561 -15182252 - L1P5 LINE L1 -544 5577 5526 651 288 111 26 chr4_random 3669602 3670159 -15181654 + L1MC4a LINE L1 5289 5604 -517 2136 135 0 0 chr4_random 3670963 3671267 -15180546 + AluSx SINE Alu 1 304 -8 2143 118 42 9 chr4_random 3672656 3672986 -15178827 + L1P LINE L1 3 343 -5803 * 6878 52 11 0 chr4_random 3672979 3673839 -15177974 + L1PA5 LINE L1 3706 4574 -1572 7153 46 2 8 chr4_random 3673839 3674730 -15177083 + L1PA5 LINE L1 5265 6153 -1 22 0 0 0 chr4_random 3675091 3675113 -15176700 + AT_rich Low_complexity Low_complexity 1 22 0 211 316 68 39 chr4_random 3676796 3676916 -15174897 - MIR SINE MIR -64 144 23 14633 128 36 21 chr4_random 3680031 3680985 -15170828 - Tigger1 DNA MER2_type -1 2417 1479 11609 139 26 1 chr4_random 3680985 3683682 -15168131 + L1PA11 LINE L1 3444 6172 -2 14633 128 36 21 chr4_random 3683682 3684160 -15167653 - Tigger1 DNA MER2_type -939 1479 1010 2027 110 0 7 chr4_random 3684160 3684433 -15167380 - AluSx SINE Alu -18 294 24 14633 128 36 21 chr4_random 3684433 3685380 -15166433 - Tigger1 DNA MER2_type -1408 1010 1 239 119 0 24 chr4_random 3685595 3685637 -15166176 - MLT2B1 LTR ERVL -8 512 472 244 214 0 0 chr4_random 3685638 3685694 -15166119 - L1MC4 LINE L1 -1373 6669 6614 486 171 12 0 chr4_random 3685733 3685815 -15165998 + Tigger3(Golem) DNA MER2_type 18 100 -2929 292 125 21 0 chr4_random 3687324 3687372 -15164441 - Tigger3(Golem) DNA MER2_type -143 2886 2838 649 192 0 0 chr4_random 3687372 3687476 -15164337 + Tigger3(Golem) DNA MER2_type 2907 3010 -19 324 0 0 0 chr4_random 3687487 3687523 -15164290 + (TG)n Simple_repeat Simple_repeat 2 37 0 2235 198 48 27 chr4_random 3687538 3687978 -15163835 - MLT2B1 LTR ERVL -69 451 3 554 248 42 81 chr4_random 3688033 3688360 -15163453 - L1MC4 LINE L1 -302 5819 5580 310 301 76 70 chr4_random 3688498 3688630 -15163183 - L1MC4 LINE L1 -545 5576 5446 1100 89 19 0 chr4_random 3688630 3688787 -15163026 + L1MB1 LINE L1 6006 6165 -3 310 301 76 70 chr4_random 3688787 3689499 -15162314 - L1MC4 LINE L1 -675 5446 4734 25 31 0 0 chr4_random 3689787 3689819 -15161994 + AT_rich Low_complexity Low_complexity 1 32 0 512 283 25 46 chr4_random 3689878 3690115 -15161698 - L1MC4a LINE L1 -1983 5825 5594 379 284 200 5 chr4_random 3690407 3690597 -15161216 + HAL1 LINE L1 472 698 -1809 264 273 239 48 chr4_random 3690623 3691037 -15160776 + L2 LINE L2 2251 2743 -571 306 0 0 0 chr4_random 3691766 3691800 -15160013 + (TG)n Simple_repeat Simple_repeat 2 35 0 330 317 77 0 chr4_random 3693241 3693345 -15158468 + L2 LINE L2 3146 3257 -15 14278 136 20 32 chr4_random 3693793 3694673 -15157140 + Tigger1 DNA MER2_type 1 890 -1528 4112 31 0 0 chr4_random 3694673 3695160 -15156653 + L1PA4 LINE L1 5666 6152 -3 14278 136 20 32 chr4_random 3695160 3696726 -15155087 + Tigger1 DNA MER2_type 890 2418 0 2010 85 4 0 chr4_random 3698312 3698582 -15153231 - L1PA10 LINE L1 -218 5950 5680 1146 143 38 19 chr4_random 3698560 3698769 -15153044 + L1PA10 LINE L1 5935 6147 -21 * 931 299 103 20 chr4_random 3698846 3699304 -15152509 + L2 LINE L2 2817 3312 -1 744 225 72 22 chr4_random 3700322 3700544 -15151269 - MER106A DNA MER1_type -2 234 2 1029 209 38 0 chr4_random 3700553 3700763 -15151050 + MER20 DNA MER1_type 1 218 -1 743 88 18 0 chr4_random 3701024 3701137 -15150676 + L1PA6 LINE L1 6040 6154 0 909 249 103 62 chr4_random 3701680 3702177 -15149636 - MLT1H LTR MaLR -30 519 3 337 241 12 0 chr4_random 3702799 3702882 -15148931 - MLT1L LTR MaLR 0 615 532 360 0 0 0 chr4_random 3702978 3703018 -15148795 + (GA)n Simple_repeat Simple_repeat 1 40 0 501 246 53 0 chr4_random 3703760 3703874 -15147939 + L2 LINE L2 3190 3309 -4 1208 241 102 37 chr4_random 3704753 3705386 -15146427 + L2 LINE L2 2642 3311 -2 296 366 7 7 chr4_random 3705390 3705532 -15146281 - L2 LINE L2 0 3313 3172 30 83 0 0 chr4_random 3706034 3706106 -15145707 + AT_rich Low_complexity Low_complexity 1 72 0 769 169 8 0 chr4_random 3706121 3706251 -15145562 + FLAM_C SINE Alu 2 132 -1 22 0 0 0 chr4_random 3706251 3706273 -15145540 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr4_random 3706867 3706894 -15144919 + (T)n Simple_repeat Simple_repeat 1 27 0 3047 104 7 5 chr4_random 3706981 3707412 -15144401 - MER57B LTR ERV1 0 434 3 1519 196 10 48 chr4_random 3707618 3707929 -15143884 + AluJo SINE Alu 1 299 -13 22 0 0 0 chr4_random 3708289 3708311 -15143502 + AT_rich Low_complexity Low_complexity 1 22 0 1628 181 24 7 chr4_random 3708461 3708759 -15143054 + AluJb SINE Alu 1 303 -9 297 0 0 0 chr4_random 3709406 3709439 -15142374 + (TG)n Simple_repeat Simple_repeat 2 34 0 189 0 0 0 chr4_random 3709438 3709459 -15142354 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 817 144 0 0 chr4_random 3710237 3710355 -15141458 + FLAM_C SINE Alu 1 118 -25 21 36 0 0 chr4_random 3710355 3710383 -15141430 + AT_rich Low_complexity Low_complexity 1 28 0 267 247 21 32 chr4_random 3710967 3711060 -15140753 - MLT1H LTR MaLR -364 185 94 218 276 94 31 chr4_random 3711569 3711696 -15140117 - MIR3 SINE MIR -4 204 70 2361 65 10 3 chr4_random 3712001 3712309 -15139504 - AluY SINE Alu -1 310 1 410 270 92 32 chr4_random 3712602 3712892 -15138921 - L1M4 LINE L1 -2943 3203 2944 1184 300 115 6 chr4_random 3712908 3713544 -15138269 - L1MC4a LINE L1 -1639 6169 5465 403 262 80 70 chr4_random 3713551 3714024 -15137789 - L1M4 LINE L1 -3216 2930 2453 746 277 195 37 chr4_random 3714371 3714858 -15136955 - L2 LINE L2 -750 2564 2001 350 287 82 75 chr4_random 3714859 3715141 -15136672 - L2 LINE L2 -1707 1607 1324 283 302 63 48 chr4_random 3715145 3715334 -15136479 - L1ME LINE L1 -547 5574 5383 385 258 47 8 chr4_random 3715768 3715896 -15135917 - MIR SINE MIR -13 249 117 2044 250 51 8 chr4_random 3715902 3716370 -15135443 - MER77 LTR ERV1 -4 601 114 203 380 28 19 chr4_random 3716447 3716555 -15135258 - MIR SINE MIR -141 121 13 342 290 75 30 chr4_random 3716780 3717180 -15134633 - L1ME LINE L1 -1353 4793 4376 1041 246 190 25 chr4_random 3717187 3717618 -15134195 + MLT1J LTR MaLR 10 511 0 377 299 24 16 chr4_random 3717732 3717859 -15133954 - L1ME LINE L1 -2000 4146 4019 267 231 7 163 chr4_random 3717862 3718009 -15133804 + MIR SINE MIR 125 248 -14 189 206 0 0 chr4_random 3717980 3718014 -15133799 + L2 LINE L2 3265 3298 -15 * 6653 93 1 1 chr4_random 3718755 3720284 -15131529 - L1PA8 LINE L1 -55 6432 4904 * 13255 156 22 17 chr4_random 3720281 3723854 -15127959 - L1PA8 LINE L1 -2809 3652 10 187 283 33 33 chr4_random 3724119 3724179 -15127634 - L2 LINE L2 -4 3268 3209 239 325 83 45 chr4_random 3724237 3724394 -15127419 - MIR SINE MIR -73 189 27 758 295 52 16 chr4_random 3724458 3724709 -15127104 - MIR SINE MIR -2 260 1 186 103 0 0 chr4_random 3725566 3725595 -15126218 + (T)n Simple_repeat Simple_repeat 1 29 0 219 386 0 41 chr4_random 3725811 3725982 -15125831 - L2 LINE L2 -643 2671 2508 209 276 184 0 chr4_random 3726449 3726547 -15125266 - MIR SINE MIR -56 206 91 342 286 14 0 chr4_random 3726620 3726690 -15125123 - L2 LINE L2 -42 3230 3160 1380 219 137 61 chr4_random 3727018 3727640 -15124173 + L1ME2 LINE L1 5465 6133 -31 206 289 31 52 chr4_random 3729207 3729304 -15122509 - L2 LINE L2 -212 3060 2966 2145 155 35 44 chr4_random 3729404 3729958 -15121855 - MLT2A2 LTR ERVL -2 552 1 291 327 50 30 chr4_random 3729962 3730164 -15121649 - L2 LINE L2 -526 2788 2583 263 325 46 10 chr4_random 3730164 3730361 -15121452 - L2 LINE L2 -1106 2208 2005 276 310 60 26 chr4_random 3730916 3731032 -15120781 - L2 LINE L2 -1 3312 3193 1214 242 50 18 chr4_random 3731037 3731380 -15120433 + MER69 DNA AcHobo 4 357 -869 242 204 22 33 chr4_random 3731979 3732117 -15119696 + MER69 DNA AcHobo 1451 1633 -893 1513 141 61 64 chr4_random 3732124 3732421 -15119392 + AluSx SINE Alu 5 300 -12 1392 201 106 8 chr4_random 3732440 3732697 -15119116 + MER69 DNA AcHobo 1710 2019 -507 342 0 0 0 chr4_random 3732697 3732735 -15119078 + (TTA)n Simple_repeat Simple_repeat 3 40 0 1392 201 106 8 chr4_random 3732735 3732865 -15118948 + MER69 DNA AcHobo 2019 2135 -391 25 37 0 37 chr4_random 3732871 3732892 -15118921 + AT_rich Low_complexity Low_complexity 1 21 -31 659 106 10 0 chr4_random 3732892 3732996 -15118817 - L1MB2 LINE L1 -4 6167 6063 25 37 0 37 chr4_random 3732996 3733028 -15118785 + AT_rich Low_complexity Low_complexity 21 52 0 249 255 21 0 chr4_random 3733443 3733537 -15118276 + MER69 DNA AcHobo 2369 2464 -62 236 308 173 10 chr4_random 3733764 3733868 -15117945 - MIR3 SINE MIR -54 154 34 1155 149 10 16 chr4_random 3735297 3735491 -15116322 + AluJo SINE Alu 1 193 -119 208 246 77 15 chr4_random 3735551 3735616 -15116197 + MIR SINE MIR 151 219 -43 200 141 71 12 chr4_random 3735908 3735993 -15115820 + (TG)n Simple_repeat Simple_repeat 2 91 0 433 244 30 44 chr4_random 3736390 3736525 -15115288 - MIR SINE MIR -21 241 109 2129 105 3 0 chr4_random 3737395 3737706 -15114107 - AluSp SINE Alu 0 312 1 221 370 20 10 chr4_random 3737800 3737900 -15113913 + MIR SINE MIR 2 102 -160 420 272 53 53 chr4_random 3738113 3738282 -15113531 - MER5B DNA MER1_type -9 169 1 428 269 149 0 chr4_random 3739072 3739213 -15112600 - MIR3 SINE MIR -28 180 19 2053 155 0 0 chr4_random 3741056 3741366 -15110447 - AluSx SINE Alu -2 310 1 2719 140 7 12 chr4_random 3742155 3742583 -15109230 + MSTB LTR MaLR 1 426 0 2096 114 3 0 chr4_random 3743266 3743556 -15108257 + AluSx SINE Alu 1 291 -21 742 317 4 21 chr4_random 3743718 3743961 -15107852 - MIR SINE MIR -9 253 15 666 257 123 46 chr4_random 3743977 3744095 -15107718 - L2 LINE L2 -91 3222 3115 2097 99 3 3 chr4_random 3744095 3744417 -15107396 + AluSx SINE Alu 1 322 0 666 257 123 46 chr4_random 3744417 3744686 -15107127 - L2 LINE L2 -198 3115 2804 541 234 9 0 chr4_random 3744928 3745035 -15106778 - MER81 DNA DNA -2 112 5 590 320 97 9 chr4_random 3749135 3749363 -15102450 - MIR SINE MIR 0 262 15 288 341 85 18 chr4_random 3750674 3750897 -15100916 - L3b LINE CR1 -143 1440 1203 490 249 181 6 chr4_random 3751260 3751318 -15100495 - MER3 DNA MER1_type 0 209 162 185 0 0 39 chr4_random 3751318 3751344 -15100469 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 490 249 181 6 chr4_random 3751344 3751462 -15100351 - MER3 DNA MER1_type -47 162 2 188 364 0 27 chr4_random 3753774 3753884 -15097929 + MIR3 SINE MIR 99 205 -3 2174 112 0 16 chr4_random 3756206 3756520 -15095293 - AluSg1 SINE Alu 0 309 1 1664 233 22 6 chr4_random 3756939 3757296 -15094517 - MLT1A2 LTR MaLR -11 363 1 1349 201 55 52 chr4_random 3757795 3758159 -15093654 - MLT1A1 LTR MaLR 0 365 1 431 254 45 60 chr4_random 3758394 3758528 -15093285 + L2 LINE L2 3141 3272 0 181 342 160 41 chr4_random 3760847 3761359 -15090454 + L2 LINE L2 2063 2635 -679 2478 188 85 28 chr4_random 3761492 3762027 -15089786 + L1MA9 LINE L1 5606 6184 -128 246 32 0 0 chr4_random 3762027 3762058 -15089755 + (CA)n Simple_repeat Simple_repeat 2 32 0 2478 188 85 28 chr4_random 3762058 3762155 -15089658 + L1MA9 LINE L1 6184 6274 -38 27 29 0 0 chr4_random 3763128 3763162 -15088651 + AT_rich Low_complexity Low_complexity 1 34 0 1090 210 59 13 chr4_random 3763179 3763417 -15088396 - MLT1D LTR MaLR -8 497 249 364 250 120 68 chr4_random 3763426 3763618 -15088195 + MLT1E LTR MaLR 386 587 -6 221 271 36 121 chr4_random 3764182 3764322 -15087491 - MIR3 SINE MIR -67 141 14 5037 90 12 35 chr4_random 3764379 3765124 -15086689 + L1PA10 LINE L1 5438 6165 -3 1962 109 33 40 chr4_random 3765310 3765613 -15086200 + AluSx SINE Alu 1 301 -11 1558 289 95 24 chr4_random 3765670 3766258 -15085555 + MER115 DNA AcHobo 35 664 -29 410 263 41 82 chr4_random 3766653 3766847 -15084966 + MER5A DNA MER1_type 1 186 -3 774 137 60 0 chr4_random 3768279 3768447 -15083366 - L1MA7 LINE L1 -2 6289 6112 25 0 0 0 chr4_random 3768867 3768892 -15082921 + AT_rich Low_complexity Low_complexity 1 25 0 403 345 65 26 chr4_random 3770989 3771221 -15080592 + L3 LINE CR1 1150 1390 -187 257 253 58 46 chr4_random 3771250 3771337 -15080476 + L3 LINE CR1 1480 1567 -10 600 314 206 17 chr4_random 3773326 3773909 -15077904 - L2 LINE L2 -338 2976 2284 236 348 56 17 chr4_random 3774481 3774659 -15077154 - L2 LINE L2 -1176 2138 1954 1969 151 0 0 chr4_random 3774686 3774993 -15076820 + AluSx SINE Alu 1 307 0 188 98 0 24 chr4_random 3775138 3775179 -15076634 + (TTAAA)n Simple_repeat Simple_repeat 3 42 0 269 91 18 0 chr4_random 3775183 3775238 -15076575 - L1MA1 LINE L1 -4 6298 6243 * 11614 150 13 7 chr4_random 3775232 3778485 -15073328 - L1MA3 LINE L1 -7 7717 4445 1947 148 57 28 chr4_random 3778496 3778848 -15072965 + THE1B LTR MaLR 1 362 -2 10827 109 4 2 chr4_random 3778850 3780422 -15071391 + THE1B-int LTR MaLR 1 1574 -6 1668 140 58 98 chr4_random 3780428 3780807 -15071006 + THE1B LTR MaLR 1 364 0 4396 150 26 25 chr4_random 3780820 3782361 -15069452 - L1MA3 LINE L1 -3139 4426 2885 279 177 186 32 chr4_random 3784353 3784477 -15067336 - L1ME4a LINE L1 0 6121 5979 300 313 45 9 chr4_random 3784667 3784779 -15067034 + L3b LINE CR1 1296 1411 -172 215 352 22 0 chr4_random 3785151 3785242 -15066571 - MIR SINE MIR -51 211 119 416 330 57 5 chr4_random 3785247 3785441 -15066372 - L2 LINE L2 -1 3312 3109 229 125 36 0 chr4_random 3786237 3786293 -15065520 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 440 243 7 92 chr4_random 3786316 3786633 -15065180 - MLT2C1 LTR ERVL -48 349 13 469 299 113 38 chr4_random 3787044 3787389 -15064424 + MLT1L LTR MaLR 122 492 -123 2625 201 15 38 chr4_random 3787419 3787831 -15063982 + L1MC3 LINE L1 6818 7211 -574 1773 181 50 112 chr4_random 3787831 3788368 -15063445 - MLT1D LTR MaLR 0 505 2 2625 201 15 38 chr4_random 3788368 3788612 -15063201 + L1MC3 LINE L1 7211 7459 -326 1094 213 0 0 chr4_random 3788616 3788832 -15062981 + MLT1D LTR MaLR 289 504 -1 1678 142 42 3 chr4_random 3788833 3789144 -15062669 + L1MC3 LINE L1 7453 7775 -10 251 309 64 43 chr4_random 3789622 3789716 -15062097 + L2 LINE L2 3176 3271 -1 742 269 23 41 chr4_random 3790067 3790458 -15061355 - HAL1 LINE L1 -114 2393 2010 764 266 23 41 chr4_random 3791002 3791393 -15060420 - HAL1 LINE L1 -114 2393 2010 480 295 136 12 chr4_random 3791536 3791882 -15059931 - HAL1 LINE L1 -738 1769 1381 2379 148 36 5 chr4_random 3791885 3792298 -15059515 + MSTA LTR MaLR 1 426 -2 227 265 96 56 chr4_random 3792304 3792553 -15059260 - HAL1 LINE L1 -1324 1183 925 345 310 178 49 chr4_random 3792559 3792846 -15058967 - HAL1 LINE L1 -1622 885 562 473 178 11 0 chr4_random 3792927 3793017 -15058796 - MER46C DNA MER2_type -1 337 247 962 156 147 5 chr4_random 3793027 3793251 -15058562 - Tigger2 DNA MER2_type -11 2707 2452 3962 118 15 24 chr4_random 3793309 3793984 -15057829 - Tigger2 DNA MER2_type -1964 754 86 38266 72 6 2 chr4_random 3794044 3800162 -15051651 - L1PA5 LINE L1 -1 6153 11 861 166 0 0 chr4_random 3800327 3800472 -15051341 + L1P LINE L1 754 898 -5248 1977 152 0 10 chr4_random 3800518 3800820 -15050993 - AluSx SINE Alu -13 299 1 815 207 100 9 chr4_random 3800877 3801145 -15050668 + MLT1D LTR MaLR 176 505 0 2014 110 33 4 chr4_random 3801233 3801538 -15050275 - AluSc SINE Alu 0 313 1 6864 71 32 0 chr4_random 3801539 3802525 -15049288 - L1PA8 LINE L1 0 6172 5179 5479 91 1 2 chr4_random 3802525 3803338 -15048475 + L1PA8 LINE L1 4387 5198 -948 498 304 109 35 chr4_random 3804159 3804389 -15047424 - MIR SINE MIR -4 258 12 279 345 109 9 chr4_random 3805811 3805921 -15045892 - L2 LINE L2 -10 3262 3142 2620 114 2 2 chr4_random 3805979 3806374 -15045439 - L1PB3 LINE L1 -1 6153 5759 1553 233 50 46 chr4_random 3809088 3809591 -15042222 - MLT1D LTR MaLR 0 505 1 520 376 34 31 chr4_random 3809738 3810065 -15041748 + L2 LINE L2 2432 2759 -555 975 202 53 107 chr4_random 3811444 3811875 -15039938 + MLT2D LTR ERVL 1 408 -6 696 182 24 47 chr4_random 3812056 3812226 -15039587 - MER3 DNA MER1_type 0 209 44 226 245 20 41 chr4_random 3812241 3812308 -15039505 - MER41E LTR ERV1 -59 453 387 2248 123 3 0 chr4_random 3812308 3812618 -15039195 + AluSp SINE Alu 1 311 -2 226 245 20 41 chr4_random 3812618 3812648 -15039165 - MER41E LTR ERV1 -125 387 358 * 1013 229 48 4 chr4_random 3812638 3812909 -15038904 - LTR43 LTR ERV1 -144 458 176 259 224 13 26 chr4_random 3813047 3813123 -15038690 - MER3 DNA MER1_type -133 76 2 281 344 80 85 chr4_random 3813162 3813575 -15038238 + L2 LINE L2 2856 3266 -6 1590 175 52 50 chr4_random 3813728 3814111 -15037702 + MLT1B LTR MaLR 2 385 -5 28 29 0 0 chr4_random 3814175 3814210 -15037603 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr4_random 3814679 3814705 -15037108 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4_random 3815384 3815407 -15036406 + (TG)n Simple_repeat Simple_repeat 2 24 0 253 186 0 86 chr4_random 3815504 3815574 -15036239 - MIR SINE MIR -54 208 145 368 313 155 7 chr4_random 3815629 3815926 -15035887 - MLT1J2 LTR MaLR -43 407 67 209 57 29 0 chr4_random 3816141 3816176 -15035637 + (TA)n Simple_repeat Simple_repeat 2 37 0 2240 90 0 3 chr4_random 3816176 3816464 -15035349 - AluSq SINE Alu -26 287 1 1511 153 69 25 chr4_random 3816822 3817097 -15034716 - AluJo SINE Alu -25 287 1 183 42 0 0 chr4_random 3817285 3817309 -15034504 + (TTG)n Simple_repeat Simple_repeat 2 25 0 356 94 19 0 chr4_random 3817326 3817379 -15034434 - U7 snRNA snRNA -1 62 9 421 309 73 22 chr4_random 3817383 3817561 -15034252 + MIR SINE MIR 45 231 -31 198 301 151 0 chr4_random 3817624 3817697 -15034116 + MIR SINE MIR 112 195 -67 281 109 18 0 chr4_random 3819936 3819991 -15031822 + (CA)n Simple_repeat Simple_repeat 2 57 0 1570 134 76 24 chr4_random 3821035 3821325 -15030488 + THE1B LTR MaLR 60 364 0 267 30 0 0 chr4_random 3821325 3821358 -15030455 + THE1B-int LTR MaLR 1 33 -1547 * 6386 76 8 0 chr4_random 3821353 3822235 -15029578 + THE1B-int LTR MaLR 688 1580 0 2034 116 102 15 chr4_random 3822235 3822570 -15029243 + THE1B LTR MaLR 1 364 0 3613 130 4 0 chr4_random 3823025 3823577 -15028236 + MER41A LTR ERV1 1 554 0 32 43 0 0 chr4_random 3823855 3823901 -15027912 + AT_rich Low_complexity Low_complexity 1 46 0 228 307 111 53 chr4_random 3824238 3824427 -15027386 - L3 LINE CR1 -4 1573 1374 354 169 0 0 chr4_random 3825553 3825618 -15026195 + CT-rich Low_complexity Low_complexity 4 68 0 1019 89 17 28 chr4_random 3825650 3825830 -15025983 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 2200 95 0 7 chr4_random 3827106 3827401 -15024412 + AluSc SINE Alu 3 295 -14 347 278 74 28 chr4_random 3829469 3830052 -15021761 - L1ME4a LINE L1 -87 7955 5664 932 105 0 0 chr4_random 3830052 3830176 -15021637 + AluSx SINE Alu 1 124 -188 465 193 146 36 chr4_random 3830356 3830531 -15021282 - L1MA10 LINE L1 -3 6331 5973 2023 231 54 35 chr4_random 3830532 3831274 -15020539 - L1M4 LINE L1 -2629 3517 2762 771 237 54 9 chr4_random 3831291 3831515 -15020298 - L1MEc LINE L1 -6134 262 29 343 322 0 43 chr4_random 3831943 3832058 -15019755 - MER5A DNA MER1_type -57 132 23 2138 273 77 23 chr4_random 3832354 3833203 -15018610 + L1ME3A LINE L1 5215 6115 -55 2042 144 0 13 chr4_random 3833203 3833516 -15018297 - AluSx SINE Alu -3 309 1 2138 273 77 23 chr4_random 3833516 3833562 -15018251 + L1ME3A LINE L1 6115 6157 -13 291 317 41 32 chr4_random 3833579 3833920 -15017893 + L1M4 LINE L1 2533 2876 -3270 666 173 194 0 chr4_random 3833923 3834062 -15017751 + AluSx SINE Alu 134 299 -11 536 325 93 16 chr4_random 3834066 3834442 -15017371 + L1M4 LINE L1 2874 3278 -2868 791 346 66 29 chr4_random 3834605 3835362 -15016451 + L1M4 LINE L1 2865 3649 -2497 353 200 267 0 chr4_random 3835377 3835444 -15016369 - MER58C DNA MER1_type -2222 198 150 282 73 0 0 chr4_random 3835444 3835485 -15016328 + (TG)n Simple_repeat Simple_repeat 2 42 0 353 200 267 0 chr4_random 3835485 3835522 -15016291 - MER58C DNA MER1_type -2270 150 66 961 216 0 0 chr4_random 3835610 3835781 -15016032 + MER58B DNA MER1_type 168 338 -3 251 313 128 6 chr4_random 3836317 3836496 -15015317 + LTR16A1 LTR ERVL 194 394 -63 351 351 24 0 chr4_random 3836598 3836763 -15015050 + HERV16 LTR ERVL 68 236 -4760 391 272 121 66 chr4_random 3836769 3837148 -15014665 + L1M4 LINE L1 4056 4455 -1691 2463 65 0 7 chr4_random 3837713 3838020 -15013793 - AluY SINE Alu -6 305 1 2027 138 20 0 chr4_random 3838126 3838431 -15013382 - AluSq SINE Alu -2 311 1 315 0 0 0 chr4_random 3838434 3838469 -15013344 + (TA)n Simple_repeat Simple_repeat 1 35 0 2211 105 0 6 chr4_random 3838472 3838786 -15013027 - AluSx SINE Alu 0 312 1 287 259 91 42 chr4_random 3838893 3839036 -15012777 + MIR SINE MIR 91 240 -22 1841 161 0 16 chr4_random 3839329 3839634 -15012179 - AluJb SINE Alu -10 302 3 183 156 0 0 chr4_random 3839931 3839963 -15011850 + GA-rich Low_complexity Low_complexity 3 34 0 940 299 105 20 chr4_random 3839971 3840581 -15011232 - L1MC4 LINE L1 -491 7551 6859 398 270 86 77 chr4_random 3840576 3841124 -15010689 - L1M3 LINE L1 -740 5431 4870 * 2099 136 8 51 chr4_random 3841124 3841513 -15010300 - L1PA16 LINE L1 -9 6157 5786 398 270 86 77 chr4_random 3841513 3841887 -15009926 - L1M3 LINE L1 -1301 4870 4501 2470 54 0 0 chr4_random 3841922 3842219 -15009594 + AluY SINE Alu 1 297 -14 663 124 0 0 chr4_random 3842477 3842574 -15009239 - AluS SINE Alu -216 97 1 1071 278 53 27 chr4_random 3842698 3843072 -15008741 - L1ME3A LINE L1 0 6170 5787 566 281 62 45 chr4_random 3843086 3843424 -15008389 - L1ME LINE L1 -4923 1196 848 300 323 82 85 chr4_random 3843453 3843735 -15008078 - L1ME LINE L1 -5288 831 551 23 0 0 0 chr4_random 3844114 3844137 -15007676 + AT_rich Low_complexity Low_complexity 1 23 0 654 331 24 8 chr4_random 3844256 3844510 -15007303 + MIR SINE MIR 5 262 0 366 378 55 21 chr4_random 3846138 3846376 -15005437 + L2 LINE L2 2824 3069 -203 1688 195 32 32 chr4_random 3846712 3847082 -15004731 - MLT1A2 LTR MaLR 0 374 5 1602 179 128 40 chr4_random 3847082 3847434 -15004379 - MSTD LTR MaLR -13 383 1 1580 176 11 0 chr4_random 3847757 3848018 -15003795 - AluJo SINE Alu -48 264 1 637 154 74 25 chr4_random 3848112 3848274 -15003539 + MER53 DNA DNA 18 187 -2 23 0 0 0 chr4_random 3848617 3848640 -15003173 + AT_rich Low_complexity Low_complexity 1 23 0 197 211 53 53 chr4_random 3849291 3849367 -15002446 + MIR SINE MIR 146 221 -41 23 54 0 0 chr4_random 3851172 3851209 -15000604 + AT_rich Low_complexity Low_complexity 1 37 0 232 255 20 0 chr4_random 3853114 3853165 -14998648 + Charlie5 DNA MER1_type 13 64 -2548 285 174 78 113 chr4_random 3853210 3853325 -14998488 + Charlie5 DNA MER1_type 2514 2624 0 189 346 86 0 chr4_random 3853726 3853807 -14998006 - MIR SINE MIR -12 250 163 2394 77 0 0 chr4_random 3855327 3855627 -14996186 + AluY SINE Alu 1 300 -11 1019 201 82 34 chr4_random 3856461 3856729 -14995084 + MLT1C LTR MaLR 187 467 0 247 262 39 71 chr4_random 3860604 3860896 -14990917 + L1M4 LINE L1 3553 3835 -2311 252 149 54 14 chr4_random 3861067 3861141 -14990672 + (TA)n Simple_repeat Simple_repeat 2 78 0 1984 121 50 0 chr4_random 3861166 3861464 -14990349 + AluSq SINE Alu 1 313 0 328 325 8 75 chr4_random 3861466 3861721 -14990092 + L1M4 LINE L1 4126 4363 -1783 25 31 0 0 chr4_random 3861752 3861784 -14990029 + AT_rich Low_complexity Low_complexity 1 32 0 674 306 60 39 chr4_random 3861802 3862368 -14989445 + L1M4 LINE L1 4487 5064 -1082 337 261 65 11 chr4_random 3862579 3862671 -14989142 + L2 LINE L2 3209 3305 -8 195 42 0 0 chr4_random 3862839 3862863 -14988950 + (TG)n Simple_repeat Simple_repeat 1 24 0 843 291 146 41 chr4_random 3862982 3863658 -14988155 + MER52A LTR ERV1 663 1409 -346 253 247 14 0 chr4_random 3863672 3863745 -14988068 + MER52A LTR ERV1 1663 1736 -19 335 323 13 13 chr4_random 3864221 3864376 -14987437 + L1ME LINE L1 2676 2830 -3316 494 300 71 26 chr4_random 3864585 3865051 -14986762 + L1ME LINE L1 3080 3566 -2580 335 292 112 0 chr4_random 3865069 3865230 -14986583 + L1ME LINE L1 5609 5787 -383 793 141 16 0 chr4_random 3865330 3865458 -14986355 + THE1C LTR MaLR 246 375 0 1591 152 17 10 chr4_random 3865479 3865768 -14986045 + L1PB4 LINE L1 5855 6145 -11 254 238 24 24 chr4_random 3867848 3867932 -14983881 + GA-rich Low_complexity Low_complexity 3 86 0 353 244 9 43 chr4_random 3867980 3868042 -14983771 + CT-rich Low_complexity Low_complexity 4 62 -52 1795 154 170 14 chr4_random 3868042 3868412 -14983401 + MSTA LTR MaLR 1 428 0 353 244 9 43 chr4_random 3868412 3868464 -14983349 + CT-rich Low_complexity Low_complexity 62 114 0 269 281 37 24 chr4_random 3869026 3869108 -14982705 + L2 LINE L2 3190 3272 0 23 68 0 0 chr4_random 3871955 3871999 -14979814 + AT_rich Low_complexity Low_complexity 1 44 0 184 317 24 24 chr4_random 3872448 3872530 -14979283 + MIR SINE MIR 27 108 -154 23 33 0 0 chr4_random 3872587 3872617 -14979196 + AT_rich Low_complexity Low_complexity 1 30 0 393 310 74 53 chr4_random 3873092 3873376 -14978437 - L2 LINE L2 -16 3297 3008 2327 94 0 3 chr4_random 3873816 3874114 -14977699 + AluSg SINE Alu 2 298 -12 33 25 0 0 chr4_random 3874312 3874352 -14977461 + AT_rich Low_complexity Low_complexity 1 40 0 30 0 0 0 chr4_random 3875936 3875966 -14975847 + AT_rich Low_complexity Low_complexity 1 30 0 1985 130 16 12 chr4_random 3875966 3876289 -14975524 - L1PB4 LINE L1 -13 6143 5820 284 284 105 32 chr4_random 3876352 3876447 -14975366 + L2 LINE L2 3202 3303 -10 349 336 15 8 chr4_random 3876639 3876773 -14975040 + MIR SINE MIR 8 142 -120 2118 113 27 3 chr4_random 3876874 3877210 -14974603 - L1PA13 LINE L1 0 6163 5820 2457 78 0 3 chr4_random 3878513 3878822 -14972991 - AluY SINE Alu -3 308 1 641 309 42 0 chr4_random 3879613 3879830 -14971983 + MIR SINE MIR 12 237 -25 551 200 8 8 chr4_random 3880878 3880998 -14970815 - L1MA10 LINE L1 0 6334 6215 876 118 0 12 chr4_random 3880998 3881138 -14970675 - L1MC/D LINE L1 -656 5644 5517 314 289 22 0 chr4_random 3881362 3881452 -14970361 + CT-rich Low_complexity Low_complexity 2 93 0 664 155 150 66 chr4_random 3882052 3882122 -14969691 - L1MA9 LINE L1 0 6312 6249 219 36 0 0 chr4_random 3882122 3882150 -14969663 + (TA)n Simple_repeat Simple_repeat 1 28 0 664 155 150 66 chr4_random 3882150 3882305 -14969508 - L1MA9 LINE L1 -63 6249 6068 27 73 0 0 chr4_random 3882309 3882364 -14969449 + AT_rich Low_complexity Low_complexity 1 55 0 668 79 0 10 chr4_random 3882428 3882529 -14969284 + (TTCC)n Simple_repeat Simple_repeat 4 103 0 264 293 89 0 chr4_random 3882530 3882687 -14969126 - L1ME LINE L1 -229 5892 5722 25 83 0 0 chr4_random 3883053 3883113 -14968700 + AT_rich Low_complexity Low_complexity 1 60 0 241 305 37 24 chr4_random 3883146 3883228 -14968585 - MIR SINE MIR -115 147 65 234 304 89 42 chr4_random 3884343 3884511 -14967302 - MIR SINE MIR -10 252 77 21 0 0 0 chr4_random 3886032 3886053 -14965760 + AT_rich Low_complexity Low_complexity 1 21 0 536 286 89 10 chr4_random 3886481 3886684 -14965129 + MIR SINE MIR 2 220 -42 689 292 119 30 chr4_random 3887028 3887575 -14964238 - L2 LINE L2 -36 3277 2675 448 258 109 52 chr4_random 3887659 3887888 -14963925 - MIR SINE MIR 0 262 21 1178 181 34 0 chr4_random 3888587 3888791 -14963022 + MLT1D LTR MaLR 6 216 -289 2332 62 26 13 chr4_random 3888818 3889124 -14962689 - AluY SINE Alu -1 310 1 181 325 79 32 chr4_random 3889192 3889318 -14962495 - MIR SINE MIR -35 227 96 2110 158 34 3 chr4_random 3890407 3890761 -14961052 - MLT1A1 LTR MaLR 0 365 1 567 0 0 0 chr4_random 3891822 3891885 -14959928 + (TC)n Simple_repeat Simple_repeat 2 64 0 777 178 0 0 chr4_random 3891910 3892064 -14959749 + FRAM SINE Alu 1 43 0 321 266 110 17 chr4_random 3893997 3894170 -14957643 + MIR SINE MIR 68 256 -6 258 32 0 0 chr4_random 3895953 3895984 -14955829 + (TG)n Simple_repeat Simple_repeat 2 32 0 3430 184 39 18 chr4_random 3896006 3896746 -14955067 - L1MC3 LINE L1 -22 7763 7008 269 272 160 8 chr4_random 3896910 3897035 -14954778 + MIR SINE MIR 119 262 0 29 0 0 0 chr4_random 3897203 3897232 -14954581 + AT_rich Low_complexity Low_complexity 1 29 0 616 362 89 37 chr4_random 3897551 3897693 -14954120 - L2 LINE L2 -19 3294 3161 207 100 0 0 chr4_random 3897693 3897723 -14954090 + (TG)n Simple_repeat Simple_repeat 2 31 0 616 362 89 37 chr4_random 3897723 3897986 -14953827 - L2 LINE L2 -152 3161 2868 1983 103 7 53 chr4_random 3898275 3898576 -14953237 + AluSg SINE Alu 1 287 -23 24 0 0 0 chr4_random 3898778 3898802 -14953011 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr4_random 3898858 3898894 -14952919 + AT_rich Low_complexity Low_complexity 1 36 0 219 69 0 0 chr4_random 3899200 3899229 -14952584 + (TG)n Simple_repeat Simple_repeat 2 30 0 507 254 67 31 chr4_random 3899573 3899766 -14952047 + MER63A DNA MER1_type 7 206 -4 294 29 0 0 chr4_random 3900243 3900278 -14951535 + (TG)n Simple_repeat Simple_repeat 1 35 0 4691 141 45 12 chr4_random 3900563 3901400 -14950413 + L1PA16 LINE L1 5283 6147 -19 276 141 51 0 chr4_random 3901720 3901798 -14950015 + (TCTA)n Simple_repeat Simple_repeat 1 82 0 246 62 0 0 chr4_random 3901937 3901969 -14949844 + (T)n Simple_repeat Simple_repeat 1 32 0 206 347 105 0 chr4_random 3903723 3903818 -14947995 + L2 LINE L2 3168 3272 0 207 176 0 0 chr4_random 3904125 3904159 -14947654 + (CA)n Simple_repeat Simple_repeat 1 34 0 542 161 0 0 chr4_random 3904299 3904386 -14947427 - MER58B DNA MER1_type 0 341 255 756 231 0 21 chr4_random 3904406 3904592 -14947221 - MER63A DNA MER1_type -28 182 1 270 0 0 0 chr4_random 3904737 3904767 -14947046 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 1571 183 7 21 chr4_random 3904767 3905056 -14946757 - AluJo SINE Alu -27 285 1 21 0 0 0 chr4_random 3905056 3905077 -14946736 + AT_rich Low_complexity Low_complexity 1 21 0 705 306 49 31 chr4_random 3908699 3908987 -14942826 - MLT1I LTR MaLR -19 390 98 195 315 0 0 chr4_random 3909231 3909285 -14942528 - MER5A DNA MER1_type 0 189 136 2416 99 50 20 chr4_random 3909298 3909352 -14942461 + L1PB1 LINE L1 5737 5788 -363 288 0 0 0 chr4_random 3909352 3909384 -14942429 + (CA)n Simple_repeat Simple_repeat 2 33 0 2416 99 50 20 chr4_random 3909384 3909732 -14942081 + L1PB1 LINE L1 5788 6151 0 3027 143 25 35 chr4_random 3910058 3911630 -14940183 + L1PA14 LINE L1 4073 5680 -481 2388 96 0 0 chr4_random 3911630 3911932 -14939881 - AluSc SINE Alu -5 304 3 3027 143 25 35 chr4_random 3911932 3912407 -14939406 + L1PA14 LINE L1 5680 6158 -3 201 273 73 0 chr4_random 3912442 3912497 -14939316 - MER5A DNA MER1_type -68 121 63 278 222 0 12 chr4_random 3912982 3913063 -14938750 + GA-rich Low_complexity Low_complexity 2 81 0 2295 209 15 17 chr4_random 3913067 3913540 -14938273 + MER70A LTR ERVL 1 472 0 383 345 63 30 chr4_random 3913980 3914279 -14937534 - L1ME4a LINE L1 -224 5897 5589 4397 195 92 5 chr4_random 3914865 3915860 -14935953 + Tigger6a DNA MER2_type 3 1083 0 257 341 120 12 chr4_random 3915897 3916064 -14935749 - MIR SINE MIR -70 192 8 903 225 21 46 chr4_random 3916583 3916823 -14934990 - MIR SINE MIR -28 234 1 220 321 36 0 chr4_random 3916848 3916904 -14934909 - L2 LINE L2 0 3272 3215 269 348 49 86 chr4_random 3917983 3918142 -14933671 + L2 LINE L2 2929 3071 -201 1842 158 137 11 chr4_random 3918142 3918522 -14933291 - MSTA LTR MaLR 0 428 1 269 348 49 86 chr4_random 3918522 3918687 -14933126 + L2 LINE L2 3071 3241 -31 188 364 50 8 chr4_random 3919103 3919224 -14932589 - L3 LINE CR1 -2 1575 1450 286 342 42 17 chr4_random 3919307 3919427 -14932386 - MIR SINE MIR -32 230 108 384 318 39 19 chr4_random 3919546 3919700 -14932113 - L3 LINE CR1 -202 1375 1219 1092 193 108 5 chr4_random 3919701 3919924 -14931889 + MLT1A1 LTR MaLR 120 365 0 1548 195 9 92 chr4_random 3919925 3920350 -14931463 + MLT1B LTR MaLR 1 390 0 240 323 129 48 chr4_random 3920410 3920596 -14931217 - L3 LINE CR1 -450 1127 927 309 51 0 0 chr4_random 3921144 3921213 -14930600 + (TG)n Simple_repeat Simple_repeat 1 108 0 309 51 0 0 chr4_random 3921213 3921252 -14930561 + (TG)n Simple_repeat Simple_repeat 2 40 0 1815 211 61 78 chr4_random 3921945 3922534 -14929279 + MLT1E LTR MaLR 15 593 0 1960 112 0 4 chr4_random 3922591 3922859 -14928954 - AluSx SINE Alu -45 267 1 1398 175 26 0 chr4_random 3923140 3923368 -14928445 - AluJb SINE Alu -18 294 61 36 23 0 0 chr4_random 4124605 4124648 -14727165 + AT_rich Low_complexity Low_complexity 1 43 0 447 355 88 37 chr4_random 4124790 4124984 -14726829 + L2 LINE L2 2489 2672 -600 1129 288 51 3 chr4_random 4124984 4125338 -14726475 + MLT1A2 LTR MaLR 4 374 0 447 355 88 37 chr4_random 4125338 4125686 -14726127 + L2 LINE L2 2672 3053 -219 521 108 161 11 chr4_random 4125767 4125860 -14725953 + MSTA LTR MaLR 1 107 -321 309 26 0 0 chr4_random 4127379 4127417 -14724396 + (TG)n Simple_repeat Simple_repeat 2 39 0 276 275 166 16 chr4_random 4128156 4128349 -14723464 + HAL1 LINE L1 63 284 -2223 1193 191 57 15 chr4_random 4128550 4128812 -14723001 + MLT1B LTR MaLR 114 386 -4 * 1710 199 29 0 chr4_random 4128810 4129151 -14722662 + MER67C LTR ERV1 356 706 -4 239 294 69 29 chr4_random 4129513 4129615 -14722198 + MIR SINE MIR 46 151 -111 360 326 0 0 chr4_random 4129820 4129915 -14721898 - L2 LINE L2 -27 3286 3192 192 264 132 0 chr4_random 4130237 4130290 -14721523 + L2 LINE L2 2925 2984 -329 1600 251 107 81 chr4_random 4131151 4131841 -14719972 - MER21B LTR ERV1 -155 708 1 209 398 0 9 chr4_random 4131934 4132042 -14719771 - L2 LINE L2 -1963 1351 1245 228 411 69 9 chr4_random 4132663 4132894 -14718919 - L2 LINE L2 -2342 972 728 22 0 0 0 chr4_random 4133308 4133330 -14718483 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr4_random 4133939 4133967 -14717846 + AT_rich Low_complexity Low_complexity 1 28 0 5419 135 64 72 chr4_random 4134196 4134869 -14716944 + Tigger3b DNA MER2_type 1 660 -2368 1618 128 34 4 chr4_random 4134869 4135135 -14716678 + AluSx SINE Alu 33 306 -6 5419 135 64 72 chr4_random 4135135 4135702 -14716111 + Tigger3b DNA MER2_type 660 1230 -1 27 0 0 0 chr4_random 4135845 4135872 -14715941 + AT_rich Low_complexity Low_complexity 1 27 0 355 330 91 24 chr4_random 4136613 4136822 -14714991 + MLT1I LTR MaLR 47 269 -140 4764 139 21 27 chr4_random 4137258 4138086 -14713727 + L1PA16 LINE L1 5338 6164 -2 21 0 0 0 chr4_random 4138192 4138213 -14713600 + AT_rich Low_complexity Low_complexity 1 21 0 1879 140 7 23 chr4_random 4139323 4139623 -14712190 + AluSx SINE Alu 1 295 -17 345 47 0 0 chr4_random 4139631 4139674 -14712139 + (TG)n Simple_repeat Simple_repeat 2 44 0 255 312 164 21 chr4_random 4140757 4140946 -14710867 + MIR SINE MIR 3 218 -44 202 343 29 38 chr4_random 4141775 4141880 -14709933 - MIR SINE MIR -73 135 32 1818 168 131 8 chr4_random 4142239 4142620 -14709193 - MSTA LTR MaLR 0 428 1 201 315 8 100 chr4_random 4142769 4142899 -14708914 + L2 LINE L2 3179 3296 -17 266 290 28 85 chr4_random 4143008 4143184 -14708629 + MIR SINE MIR 84 249 -13 211 319 58 0 chr4_random 4143264 4143333 -14708480 + L2 LINE L2 3237 3309 -4 22 70 0 0 chr4_random 4143386 4143429 -14708384 + AT_rich Low_complexity Low_complexity 1 43 0 1878 139 71 8 chr4_random 4143509 4143862 -14707951 + THE1C LTR MaLR 1 375 0 324 188 0 0 chr4_random 4144553 4144622 -14707191 + GA-rich Low_complexity Low_complexity 2 70 0 457 48 0 0 chr4_random 4144723 4144785 -14707028 - L1PA6 LINE L1 -1 6153 6092 1128 300 36 33 chr4_random 4144877 4144917 -14706896 + L1M4c LINE L1 1061 1099 -5547 1627 155 57 43 chr4_random 4144917 4145285 -14706528 - THE1C LTR MaLR -2 373 1 1128 300 36 33 chr4_random 4145285 4146131 -14705682 + L1M4c LINE L1 1099 1941 -4705 23 92 0 0 chr4_random 4146353 4146418 -14705395 + AT_rich Low_complexity Low_complexity 1 65 0 1623 140 47 4 chr4_random 4146603 4146860 -14704953 + THE1B LTR MaLR 1 268 -96 1221 206 13 0 chr4_random 4147501 4147734 -14704079 + MER46A DNA MER2_type 1 236 0 465 189 41 41 chr4_random 4147850 4147972 -14703841 - LTR9 LTR ERV1 0 612 491 189 0 0 0 chr4_random 4148352 4148373 -14703440 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 6101 88 13 26 chr4_random 4148384 4150149 -14701664 - L1PA11 LINE L1 -7 6167 4442 694 151 9 0 chr4_random 4150149 4150255 -14701558 - U6 snRNA snRNA 0 107 1 1167 192 94 0 chr4_random 4150499 4150721 -14701092 + Tigger3(Golem) DNA MER2_type 1 243 -2786 7193 187 126 23 chr4_random 4150721 4152312 -14699501 - MER52A LTR ERV1 0 1755 1 3157 160 25 62 chr4_random 4152312 4152741 -14699072 + Tigger3(Golem) DNA MER2_type 240 640 -2389 1526 130 5 0 chr4_random 4152741 4152964 -14698849 + AluSg/x SINE Alu 66 289 -21 3157 160 25 62 chr4_random 4152964 4153167 -14698646 + Tigger3(Golem) DNA MER2_type 640 849 -2180 664 207 0 0 chr4_random 4153267 4153388 -14698425 - AluJb SINE Alu -18 294 174 22 0 0 0 chr4_random 4153824 4153846 -14697967 + AT_rich Low_complexity Low_complexity 1 22 0 392 251 82 24 chr4_random 4154191 4154398 -14697415 + MER69 DNA AcHobo 2194 2412 -114 1691 211 31 86 chr4_random 4154802 4155309 -14696504 + MLT2B1 LTR ERVL 1 477 -43 321 47 0 0 chr4_random 4155309 4155352 -14696461 + (TG)n Simple_repeat Simple_repeat 2 44 0 1691 211 31 86 chr4_random 4155352 4155394 -14696419 + MLT2B1 LTR ERVL 477 520 0 23 78 0 0 chr4_random 4155599 4155650 -14696163 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr4_random 4157503 4157531 -14694282 + AT_rich Low_complexity Low_complexity 1 28 0 1547 92 8 52 chr4_random 4158239 4158489 -14693324 - L1PA13 LINE L1 -7 6156 5918 293 311 0 82 chr4_random 4158870 4158992 -14692821 - L2 LINE L2 0 3313 3202 384 22 0 0 chr4_random 4159077 4159122 -14692691 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 574 242 160 57 chr4_random 4159493 4159811 -14692002 - L1ME1 LINE L1 -4 6162 5812 352 257 53 0 chr4_random 4159856 4159969 -14691844 - L1MB1 LINE L1 -38 6151 6033 * 2253 306 70 18 chr4_random 4159965 4161055 -14690758 - L1MEc LINE L1 -5246 1150 5 500 261 69 0 chr4_random 4161233 4161401 -14690412 + L1ME3A LINE L1 5803 5982 -180 261 0 0 0 chr4_random 4161737 4161766 -14690047 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 774 143 24 0 chr4_random 4161860 4161986 -14689827 - MLT2B1 LTR ERVL -391 129 1 251 190 20 20 chr4_random 4162053 4162153 -14689660 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 36 0 0 chr4_random 4162379 4162407 -14689406 + AT_rich Low_complexity Low_complexity 1 28 0 333 301 75 27 chr4_random 4163343 4163489 -14688324 + MIR SINE MIR 103 255 -7 291 345 17 9 chr4_random 4163656 4163772 -14688041 - MIR SINE MIR -108 154 38 2781 13 0 0 chr4_random 4163797 4164106 -14687707 - AluYb8 SINE Alu -9 309 1 431 327 48 57 chr4_random 4164132 4164465 -14687348 - L2 LINE L2 -55 3258 2929 668 200 8 0 chr4_random 4164531 4164656 -14687157 + FLAM_C SINE Alu 1 126 -17 587 334 135 42 chr4_random 4164725 4165483 -14686330 - L2 LINE L2 -955 2359 1532 25 65 0 0 chr4_random 4165671 4165717 -14686096 + AT_rich Low_complexity Low_complexity 1 46 0 342 267 44 65 chr4_random 4166956 4167245 -14684568 + L1ME LINE L1 5260 5523 -639 365 227 33 80 chr4_random 4167292 4167442 -14684371 + L1ME LINE L1 5659 5801 -361 524 320 62 28 chr4_random 4168395 4168961 -14682852 - L1ME3A LINE L1 -287 5883 5299 2494 83 23 0 chr4_random 4169395 4169743 -14682070 - L1PA7 LINE L1 -2 6152 5797 28 61 0 0 chr4_random 4170801 4170850 -14680963 + AT_rich Low_complexity Low_complexity 1 49 0 552 279 153 50 chr4_random 4170985 4171252 -14680561 + L2 LINE L2 1749 2060 -1254 207 0 0 0 chr4_random 4171252 4171275 -14680538 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 552 279 153 50 chr4_random 4171275 4171348 -14680465 + L2 LINE L2 2060 2124 -1190 2126 221 30 14 chr4_random 4171356 4171790 -14680023 + MER70B LTR ERVL 1 441 -137 313 310 39 19 chr4_random 4171958 4172113 -14679700 + L2 LINE L2 2353 2510 -804 1692 157 62 45 chr4_random 4172151 4172508 -14679305 - MLT2D LTR ERVL -51 363 1 426 69 0 0 chr4_random 4173069 4173127 -14678686 + (CA)n Simple_repeat Simple_repeat 2 59 0 22 35 0 0 chr4_random 4174011 4174040 -14677773 + AT_rich Low_complexity Low_complexity 1 29 0 692 286 68 13 chr4_random 4174870 4175251 -14676562 - L1MEc LINE L1 -5239 1157 756 1036 121 108 0 chr4_random 4175265 4175431 -14676382 + MER30 DNA MER1_type 1 184 -46 415 334 80 40 chr4_random 4175469 4176091 -14675722 - L1MEc LINE L1 -5662 734 88 198 103 0 0 chr4_random 4176187 4176216 -14675597 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 47 0 0 chr4_random 4176847 4176890 -14674923 + AT_rich Low_complexity Low_complexity 1 43 0 3465 176 47 41 chr4_random 4177227 4178007 -14673806 - LTR1 LTR ERV1 0 785 1 13054 193 42 8 chr4_random 4178449 4181047 -14670766 + L1M1 LINE L1 7 2692 -4873 5651 217 12 14 chr4_random 4181157 4183001 -14668812 + L1M1 LINE L1 3217 5057 -2508 630 127 24 8 chr4_random 4183007 4183133 -14668680 + CT-rich Low_complexity Low_complexity 4 131 0 370 167 0 0 chr4_random 4183143 4183203 -14668610 - AluSp/q SINE Alu -3 300 241 2218 185 15 3 chr4_random 4183409 4183876 -14667937 + L1PA16 LINE L1 2053 2880 -4616 220 172 35 0 chr4_random 4183890 4183948 -14667865 + (TA)n Simple_repeat Simple_repeat 1 60 0 4332 177 27 10 chr4_random 4183971 4185357 -14666456 + L1PA16 LINE L1 6176 7584 -1 255 350 120 42 chr4_random 4185793 4186219 -14665594 + L2 LINE L2 2805 3263 -50 355 295 98 0 chr4_random 4187030 4187142 -14664671 - L2 LINE L2 0 3313 3191 7810 231 60 43 chr4_random 4187234 4187517 -14664296 - L1MC/D LINE L1 -715 5618 5341 1672 130 93 31 chr4_random 4187517 4187870 -14663943 + THE1C LTR MaLR 1 375 0 7810 231 60 43 chr4_random 4187870 4189981 -14661832 - L1MC/D LINE L1 -992 5341 3199 948 26 0 0 chr4_random 4189981 4190095 -14661718 + L1PA3 LINE L1 6040 6153 -2 7810 231 60 43 chr4_random 4190095 4190755 -14661058 - L1MC/D LINE L1 -3134 3199 2551 271 290 45 0 chr4_random 4190792 4190947 -14660866 - L1MC/D LINE L1 -3735 2411 2250 2005 155 8 44 chr4_random 4190962 4191348 -14660465 - L1PB3 LINE L1 -1 7572 7201 240 111 0 0 chr4_random 4191359 4191395 -14660418 + (CA)n Simple_repeat Simple_repeat 2 37 0 2643 201 13 12 chr4_random 4191603 4192529 -14659284 - L1PB3 LINE L1 -382 7191 6265 4818 160 19 19 chr4_random 4192529 4193493 -14658320 - L1PB3 LINE L1 -4067 3498 2535 8047 153 54 7 chr4_random 4193639 4195002 -14656811 - THE1C-int LTR MaLR -153 1427 1 2324 121 21 16 chr4_random 4195003 4195375 -14656438 - THE1C LTR MaLR -1 374 1 21 0 0 0 chr4_random 4195574 4195595 -14656218 + AT_rich Low_complexity Low_complexity 1 21 0 1261 227 59 81 chr4_random 4196482 4196943 -14654870 + MLT1C LTR MaLR 1 467 0 1295 166 45 123 chr4_random 4197013 4197448 -14654365 + MER67C LTR ERV1 1 407 -243 602 212 115 6 chr4_random 4197439 4197604 -14654209 + MER67D LTR ERV1 328 510 -4 * 229 232 30 71 chr4_random 4198309 4198408 -14653405 + L2 LINE L2 3152 3246 -67 673 175 23 6 chr4_random 4198492 4198669 -14653144 + (TATATG)n Simple_repeat Simple_repeat 1 180 0 258 146 21 0 chr4_random 4198676 4198724 -14653089 + (TA)n Simple_repeat Simple_repeat 2 50 0 1970 191 4 71 chr4_random 4198724 4199186 -14652627 + Tigger2a DNA MER2_type 1 431 -3 333 0 0 0 chr4_random 4199186 4199223 -14652590 + (TG)n Simple_repeat Simple_repeat 2 38 0 250 299 125 14 chr4_random 4200237 4200381 -14651432 - MIR SINE MIR -56 206 47 23 0 0 0 chr4_random 4201329 4201352 -14650461 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr4_random 4201638 4201679 -14650134 + AT_rich Low_complexity Low_complexity 1 41 0 1521 210 60 9 chr4_random 4201737 4202084 -14649729 + MLT1A1 LTR MaLR 1 365 0 460 332 25 5 chr4_random 4203139 4203341 -14648472 + MIR SINE MIR 3 208 -54 1315 180 13 72 chr4_random 4203747 4204052 -14647761 - AluJo SINE Alu -25 287 1 195 182 0 0 chr4_random 4205275 4205308 -14646505 - L2 LINE L2 -19 3253 3221 23 0 0 0 chr4_random 4205453 4205476 -14646337 + AT_rich Low_complexity Low_complexity 1 23 0 916 266 33 7 chr4_random 4206741 4207016 -14644797 - MLT1D LTR MaLR 0 505 224 1532 146 64 67 chr4_random 4207039 4207415 -14644398 - THE1C LTR MaLR 0 375 1 1075 127 41 15 chr4_random 4207415 4207612 -14644201 - THE1C-int LTR MaLR 0 1580 1379 6738 148 62 45 chr4_random 4207895 4209176 -14642637 - THE1C-int LTR MaLR -276 1304 3 1602 169 78 36 chr4_random 4209178 4209538 -14642275 - THE1C LTR MaLR 0 375 1 529 215 31 110 chr4_random 4209538 4209729 -14642084 - MLT1D LTR MaLR -329 176 1 330 288 149 42 chr4_random 4209959 4210174 -14641639 + MIR SINE MIR 21 258 -4 405 229 41 41 chr4_random 4210484 4210654 -14641159 - MER104 DNA Tc2 -1 179 10 214 276 35 0 chr4_random 4210877 4210935 -14640878 - L3 LINE CR1 -1432 145 86 229 253 32 32 chr4_random 4212704 4212799 -14639014 + (TCTCTG)n Simple_repeat Simple_repeat 2 96 0 1877 104 15 4 chr4_random 4213494 4213754 -14638059 + AluSg SINE Alu 23 285 -25 1179 194 127 8 chr4_random 4213913 4214181 -14637632 - AluJb SINE Alu -2 300 1 21 82 0 0 chr4_random 4214347 4214396 -14637417 + AT_rich Low_complexity Low_complexity 1 49 0 645 174 0 23 chr4_random 4216302 4216434 -14635379 - L1PB4 LINE L1 -1 6155 6027 417 129 0 0 chr4_random 4216449 4216511 -14635302 - L1 LINE L1 -2298 3848 3787 417 354 128 10 chr4_random 4216513 4216801 -14635012 + L2 LINE L2 2950 3271 -42 31 0 0 0 chr4_random 4216947 4216978 -14634835 + AT_rich Low_complexity Low_complexity 1 31 0 280 239 228 54 chr4_random 4217395 4217562 -14634251 - L2 LINE L2 -5 3308 3113 306 272 111 12 chr4_random 4217746 4217827 -14633986 + L2 LINE L2 3225 3313 0 29 104 0 0 chr4_random 4217926 4218032 -14633781 + AT_rich Low_complexity Low_complexity 1 106 0 249 57 0 0 chr4_random 4220138 4220173 -14631640 + (TG)n Simple_repeat Simple_repeat 2 36 0 231 114 0 0 chr4_random 4220422 4220457 -14631356 + (TA)n Simple_repeat Simple_repeat 1 35 0 13034 105 35 1 chr4_random 4220558 4223281 -14628532 - L1PA7 LINE L1 -8 6146 3357 21 0 0 0 chr4_random 4223289 4223310 -14628503 + AT_rich Low_complexity Low_complexity 1 21 0 225 243 9 122 chr4_random 4223594 4223701 -14628112 - L2 LINE L2 -7 3265 3171 21 36 0 0 chr4_random 4223977 4224005 -14627808 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr4_random 4224536 4224564 -14627249 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr4_random 4224829 4224879 -14626934 + AT_rich Low_complexity Low_complexity 1 50 0 1432 186 3 41 chr4_random 4225492 4225808 -14626005 + AluJo SINE Alu 3 307 0 332 231 0 0 chr4_random 4226173 4226251 -14625562 - L1MA10 LINE L1 -7 6327 6250 21 82 0 0 chr4_random 4226494 4226543 -14625270 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr4_random 4226658 4226679 -14625134 + AT_rich Low_complexity Low_complexity 1 21 0 472 202 0 0 chr4_random 4227064 4227148 -14624665 - LTR29 LTR ERV1 -75 547 464 1144 225 3 5 chr4_random 4227907 4228155 -14623658 + L1PA16 LINE L1 5923 6167 -7 312 248 74 13 chr4_random 4228333 4228482 -14623331 + L1MA10 LINE L1 6169 6326 -8 22 70 0 0 chr4_random 4229283 4229326 -14622487 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4_random 4229639 4229661 -14622152 + AT_rich Low_complexity Low_complexity 1 22 0 200 277 0 0 chr4_random 4229923 4229970 -14621843 + (TG)n Simple_repeat Simple_repeat 1 47 0 206 182 0 23 chr4_random 4230234 4230278 -14621535 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 2227 122 6 42 chr4_random 4230306 4230666 -14621147 + THE1B LTR MaLR 1 347 -17 256 304 65 49 chr4_random 4230883 4231067 -14620746 - MER102b DNA MER1_type -10 331 145 1881 116 13 121 chr4_random 4231244 4231642 -14620171 - THE1A LTR MaLR 0 355 1 11008 106 7 6 chr4_random 4231642 4233220 -14618593 - THE1A-int LTR MaLR 0 1580 1 2205 122 11 8 chr4_random 4233220 4233572 -14618241 - THE1A LTR MaLR 0 355 3 244 312 33 5 chr4_random 4234123 4234221 -14617592 - MIR SINE MIR -62 146 56 1985 114 14 4 chr4_random 4234464 4234766 -14617047 - AluSq SINE Alu 0 305 1 865 330 105 50 chr4_random 4235372 4236342 -14615471 - L2 LINE L2 0 3313 2310 276 30 0 0 chr4_random 4236983 4237016 -14614797 + (CA)n Simple_repeat Simple_repeat 2 34 0 191 152 30 0 chr4_random 4237323 4237356 -14614457 - L2 LINE L2 -15 3257 3224 514 337 32 28 chr4_random 4237582 4237831 -14613982 - MIR SINE MIR 0 262 13 1646 79 9 0 chr4_random 4238210 4238438 -14613375 - L1PA8 LINE L1 -1 6171 5942 453 345 49 30 chr4_random 4238748 4239052 -14612761 - MLT1I LTR MaLR 0 409 100 24 100 0 0 chr4_random 4239491 4239571 -14612242 + AT_rich Low_complexity Low_complexity 1 80 0 792 140 87 0 chr4_random 4240045 4240195 -14611618 - MER34 LTR ERV1 0 542 380 898 264 59 15 chr4_random 4240243 4240516 -14611297 - MER34 LTR ERV1 -257 285 1 22 35 0 0 chr4_random 4240672 4240701 -14611112 + AT_rich Low_complexity Low_complexity 1 29 0 2797 181 63 12 chr4_random 4242228 4242802 -14609011 - L1MC1 LINE L1 -126 6207 5605 986 250 67 89 chr4_random 4242839 4243192 -14608621 + MLT1E LTR MaLR 286 593 0 2394 84 0 3 chr4_random 4243242 4243553 -14608260 - AluY SINE Alu -1 310 1 23 33 0 0 chr4_random 4243586 4243616 -14608197 + AT_rich Low_complexity Low_complexity 1 30 0 437 261 9 17 chr4_random 4243980 4244095 -14607718 - MIR SINE MIR -30 232 119 11329 153 113 15 chr4_random 4244100 4246233 -14605580 - Tigger1 DNA MER2_type -73 2345 3 23 0 0 0 chr4_random 4246235 4246258 -14605555 + AT_rich Low_complexity Low_complexity 1 23 0 228 336 27 48 chr4_random 4246757 4246903 -14604910 + L2 LINE L2 3162 3304 -9 2103 128 7 3 chr4_random 4247196 4247502 -14604311 + AluSx SINE Alu 1 307 -5 2177 108 3 3 chr4_random 4247539 4247834 -14603979 + AluSx SINE Alu 1 295 -17 585 228 12 47 chr4_random 4247844 4248015 -14603798 - MIR SINE MIR -56 206 42 2044 121 3 7 chr4_random 4248975 4249272 -14602541 + AluSx SINE Alu 1 296 -16 22 35 0 0 chr4_random 4249344 4249373 -14602440 + AT_rich Low_complexity Low_complexity 1 29 0 1126 204 15 27 chr4_random 4249452 4249712 -14602101 - AluJo SINE Alu -47 265 9 2279 162 78 14 chr4_random 4251368 4251793 -14600020 - L1PA16 LINE L1 -9 6157 5706 21 71 0 0 chr4_random 4251940 4251982 -14599831 + AT_rich Low_complexity Low_complexity 1 42 0 22 88 0 0 chr4_random 4252485 4252542 -14599271 + AT_rich Low_complexity Low_complexity 1 57 0 580 313 58 10 chr4_random 4252679 4252887 -14598926 - LTR33 LTR ERVL -303 218 1 2373 87 3 0 chr4_random 4253428 4253739 -14598074 - AluSp SINE Alu 0 313 2 25 0 0 0 chr4_random 4254350 4254375 -14597438 + AT_rich Low_complexity Low_complexity 1 25 0 314 307 35 9 chr4_random 4254457 4254571 -14597242 - MIR SINE MIR -73 189 73 1071 209 80 51 chr4_random 4255802 4256000 -14595813 - MLT1B LTR MaLR -1 389 198 348 24 0 0 chr4_random 4256000 4256041 -14595772 + (GA)n Simple_repeat Simple_repeat 2 42 0 1071 209 80 51 chr4_random 4256041 4256216 -14595597 - MLT1B LTR MaLR -192 198 5 22 0 0 0 chr4_random 4256423 4256445 -14595368 + AT_rich Low_complexity Low_complexity 1 22 0 231 125 0 0 chr4_random 4256854 4256894 -14594919 + (CA)n Simple_repeat Simple_repeat 2 41 0 24 32 0 0 chr4_random 4256984 4257015 -14594798 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr4_random 4257380 4257413 -14594400 + AT_rich Low_complexity Low_complexity 1 33 0 1706 161 34 47 chr4_random 4257817 4258197 -14593616 + THE1C LTR MaLR 1 375 0 298 277 0 0 chr4_random 4258260 4258343 -14593470 + (TA)n Simple_repeat Simple_repeat 1 83 0 1757 213 31 33 chr4_random 4258749 4259172 -14592641 - MSTB LTR MaLR -4 422 1 1632 126 3 90 chr4_random 4260715 4261037 -14590776 - AluSc SINE Alu 0 299 4 302 331 73 50 chr4_random 4261528 4261881 -14589932 + L1M4 LINE L1 3530 3894 -2252 2195 90 17 10 chr4_random 4261881 4262181 -14589632 - AluSg1 SINE Alu -7 302 1 302 331 73 50 chr4_random 4262181 4262208 -14589605 + L1M4 LINE L1 3894 3919 -2227 4759 174 68 17 chr4_random 4262632 4263577 -14588236 - L1MA8 LINE L1 -3 6288 5287 195 42 0 0 chr4_random 4263577 4263601 -14588212 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 4759 174 68 17 chr4_random 4263601 4263805 -14588008 - L1MA8 LINE L1 -1004 5287 5095 28 0 0 0 chr4_random 4265626 4265654 -14586159 + AT_rich Low_complexity Low_complexity 1 28 0 959 218 56 31 chr4_random 4266360 4266763 -14585050 + MER31A LTR ERV1 1 661 0 924 116 0 41 chr4_random 4267595 4267741 -14584072 - FRAM SINE Alu -8 168 29 1924 151 0 10 chr4_random 4268059 4268371 -14583442 + AluSx SINE Alu 2 310 -2 185 364 16 50 chr4_random 4269177 4269298 -14582515 - MIR SINE MIR -56 206 90 1509 226 46 3 chr4_random 4269626 4269976 -14581837 + MLT1A1 LTR MaLR 1 365 0 23 68 0 0 chr4_random 4270224 4270268 -14581545 + AT_rich Low_complexity Low_complexity 1 44 0 1647 124 29 7 chr4_random 4270268 4270543 -14581270 - L1MA4A LINE L1 -12 6291 6011 187 297 27 27 chr4_random 4270603 4270677 -14581136 - MIR3 SINE MIR -31 177 104 6314 159 9 27 chr4_random 4270690 4270937 -14580876 + L1PA14 LINE L1 4081 4331 -1830 2091 88 0 20 chr4_random 4270937 4271231 -14580582 + AluY SINE Alu 1 288 -23 6314 159 9 27 chr4_random 4271231 4273103 -14578710 + L1PA14 LINE L1 4331 6158 -3 239 295 53 11 chr4_random 4274551 4274646 -14577167 - MIR SINE MIR -46 216 118 14151 175 59 14 chr4_random 4274674 4280527 -14571286 + L1P5 LINE L1 1 6164 -703 952 73 0 0 chr4_random 4280527 4280648 -14571165 + L1PB1 LINE L1 6027 6150 -1 210 369 12 12 chr4_random 4281109 4281193 -14570620 - MIR SINE MIR -107 101 18 1514 223 130 66 chr4_random 4281297 4281888 -14569925 - MER92B LTR ERV1 -1 635 7 231 305 0 12 chr4_random 4282925 4283007 -14568806 - MIR SINE MIR -70 192 112 367 175 62 38 chr4_random 4283283 4283363 -14568450 - MIR SINE MIR 0 262 181 405 325 123 0 chr4_random 4284649 4284812 -14567001 + L2 LINE L2 858 1040 -2274 2322 85 0 3 chr4_random 4284904 4285209 -14566604 - AluY SINE Alu -6 305 2 22 56 0 0 chr4_random 4285493 4285529 -14566284 + AT_rich Low_complexity Low_complexity 1 36 0 524 164 9 0 chr4_random 4286151 4286261 -14565552 + (TCTA)n Simple_repeat Simple_repeat 3 113 0 305 215 0 15 chr4_random 4286517 4286582 -14565231 - MIR SINE MIR -3 259 196 264 158 0 0 chr4_random 4286586 4286643 -14565170 + (TGGA)n Simple_repeat Simple_repeat 2 58 0 256 266 39 31 chr4_random 4286810 4286938 -14564875 - L1MA9 LINE L1 -38 6274 6146 2001 147 3 3 chr4_random 4287546 4287858 -14563955 - AluSx SINE Alu 0 312 1 23 78 0 0 chr4_random 4288238 4288289 -14563524 + AT_rich Low_complexity Low_complexity 1 51 0 1731 158 103 79 chr4_random 4288292 4288710 -14563103 + MSTA LTR MaLR 1 428 0 7972 182 6 34 chr4_random 4288712 4290230 -14561583 + MSTA-int LTR MaLR 3 1478 -102 5383 131 4 50 chr4_random 4290240 4290482 -14561331 - L1PA12 LINE L1 -2 6166 5915 342 0 0 0 chr4_random 4290482 4290520 -14561293 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2129 102 0 3 chr4_random 4290520 4290803 -14561010 - AluY SINE Alu -29 282 1 5383 131 4 50 chr4_random 4290803 4291506 -14560307 - L1PA12 LINE L1 -251 5917 5263 631 143 0 9 chr4_random 4291522 4291634 -14560179 + MSTA-int LTR MaLR 1470 1580 0 1559 151 148 75 chr4_random 4291634 4292032 -14559781 + MSTA LTR MaLR 1 427 -1 1999 242 26 4 chr4_random 4292265 4292727 -14559086 - MER70A LTR ERVL 0 472 1 707 230 41 94 chr4_random 4293079 4293418 -14558395 + MLT1D LTR MaLR 181 501 -4 328 340 73 0 chr4_random 4293667 4293873 -14557940 + LTR33 LTR ERVL 299 519 -2 31 88 0 0 chr4_random 4294188 4294268 -14557545 + AT_rich Low_complexity Low_complexity 1 80 0 3028 108 23 2 chr4_random 4294350 4294785 -14557028 - MLT2A1 LTR ERVL 0 444 1 1518 73 0 0 chr4_random 4294785 4294989 -14556824 - HERVL-A1 LTR ERVL 0 5654 5451 1034 224 4 12 chr4_random 4296262 4296517 -14555296 - AluSx SINE Alu -59 253 1 1215 98 0 27 chr4_random 4297409 4297592 -14554221 - AluSq SINE Alu -105 208 31 234 0 0 0 chr4_random 4297595 4297621 -14554192 + (TA)n Simple_repeat Simple_repeat 2 27 0 1051 257 24 10 chr4_random 4297624 4297735 -14554078 - MLT1A2 LTR MaLR -74 300 192 279 0 0 0 chr4_random 4297735 4297766 -14554047 + (GA)n Simple_repeat Simple_repeat 2 32 0 1051 257 24 10 chr4_random 4297766 4297950 -14553863 - MLT1A2 LTR MaLR -182 192 1 1158 50 0 0 chr4_random 4298105 4298246 -14553567 + L1PA3 LINE L1 6012 6152 -3 1005 171 6 0 chr4_random 4298313 4298483 -14553330 - FRAM SINE Alu -13 163 1 220 300 62 0 chr4_random 4298485 4298565 -14553248 - L2 LINE L2 -1328 1986 1902 35 54 0 0 chr4_random 4298853 4298909 -14552904 + AT_rich Low_complexity Low_complexity 1 56 0 243 331 71 26 chr4_random 4299650 4299804 -14552009 + MIR SINE MIR 72 232 -30 2294 100 3 0 chr4_random 4300272 4300581 -14551232 - AluSp SINE Alu -3 310 1 498 33 0 0 chr4_random 4301967 4302027 -14549786 + (TC)n Simple_repeat Simple_repeat 1 60 0 1841 59 98 0 chr4_random 4302027 4302281 -14549532 - AluY SINE Alu -32 279 1 323 185 33 65 chr4_random 4303198 4303290 -14548523 + MER54B LTR ERVL 481 569 -224 1162 195 18 0 chr4_random 4303422 4303643 -14548170 + MER54B LTR ERVL 539 763 -30 1268 156 9 4 chr4_random 4303693 4303924 -14547889 + L1PA16 LINE L1 5925 6156 -10 245 98 24 0 chr4_random 4303935 4303976 -14547837 + MER54B LTR ERVL 750 791 -2 484 292 65 6 chr4_random 4304327 4304495 -14547318 - MIR SINE MIR -14 248 71 2005 138 0 3 chr4_random 4306479 4306769 -14545044 + AluSg SINE Alu 3 291 -19 360 0 0 0 chr4_random 4309495 4309535 -14542278 + (CA)n Simple_repeat Simple_repeat 2 41 0 276 257 46 55 chr4_random 4309601 4309710 -14542103 - L2 LINE L2 -58 3255 3148 1364 133 0 19 chr4_random 4309739 4309950 -14541863 - MSTA LTR MaLR -2 426 220 455 343 53 5 chr4_random 4309975 4310182 -14541631 - L2 LINE L2 -163 3150 2934 326 303 45 39 chr4_random 4310875 4311030 -14540783 + MIR SINE MIR 2 157 -105 279 277 0 0 chr4_random 4311040 4311105 -14540708 - MIR SINE MIR -25 237 173 330 118 0 0 chr4_random 4311161 4311212 -14540601 + MADE1 DNA Mariner 30 80 0 623 320 93 22 chr4_random 4311213 4311673 -14540140 - HsTC2a DNA Tc2 -208 536 44 2259 100 0 3 chr4_random 4312044 4312345 -14539468 + AluSc SINE Alu 1 300 -9 303 166 20 40 chr4_random 4314313 4314464 -14537349 + (TATAA)n Simple_repeat Simple_repeat 1 148 0 23 33 0 0 chr4_random 4315500 4315530 -14536283 + AT_rich Low_complexity Low_complexity 1 30 0 2258 103 0 3 chr4_random 4315811 4316111 -14535702 - AluSx SINE Alu -13 299 1 3399 32 0 0 chr4_random 4316346 4316752 -14535061 + L1PA4 LINE L1 5750 6155 0 624 347 19 0 chr4_random 4317058 4317274 -14534539 - MIR SINE MIR -21 241 22 2974 103 0 14 chr4_random 4317439 4317866 -14533947 - HERVL-A2 LTR ERVL -305 5349 4929 531 114 0 0 chr4_random 4317866 4317945 -14533868 - AluY SINE Alu -18 293 215 35044 101 9 12 chr4_random 4317945 4322895 -14528918 - HERVL-A2 LTR ERVL -717 4937 1 237 222 19 0 chr4_random 4322895 4322949 -14528864 - MLT2A2 LTR ERVL 0 453 399 316 318 0 0 chr4_random 4322966 4323054 -14528759 - L1MC4 LINE L1 -1339 6703 6616 2815 100 18 5 chr4_random 4323054 4323453 -14528360 - MLT2A1 LTR ERVL -40 404 1 26 74 0 0 chr4_random 4323708 4323762 -14528051 + AT_rich Low_complexity Low_complexity 1 54 0 333 270 13 97 chr4_random 4324370 4324607 -14527206 + L2 LINE L2 3019 3235 -78 22 0 0 0 chr4_random 4324628 4324650 -14527163 + AT_rich Low_complexity Low_complexity 1 22 0 243 342 51 17 chr4_random 4324650 4324767 -14527046 + MER5A DNA MER1_type 63 183 -6 208 246 0 134 chr4_random 4326005 4326139 -14525674 - MIR SINE MIR -68 140 25 1895 126 23 78 chr4_random 4326479 4326795 -14525018 + THE1C LTR MaLR 1 333 -42 2045 87 0 28 chr4_random 4326795 4327082 -14524731 + AluY SINE Alu 1 279 -32 243 0 0 0 chr4_random 4327084 4327111 -14524702 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1895 126 23 78 chr4_random 4327111 4327188 -14524625 + THE1C LTR MaLR 334 375 0 8395 153 39 34 chr4_random 4327188 4328760 -14523053 + THE1C-int LTR MaLR 1 1580 0 1854 162 32 24 chr4_random 4328761 4329132 -14522681 + THE1C LTR MaLR 2 375 0 252 313 143 9 chr4_random 4330015 4330127 -14521686 - L2 LINE L2 -2 3311 3185 282 56 0 0 chr4_random 4330144 4330180 -14521633 + (CA)n Simple_repeat Simple_repeat 2 37 0 201 202 11 22 chr4_random 4330186 4330275 -14521538 + (TA)n Simple_repeat Simple_repeat 1 88 0 300 363 63 8 chr4_random 4330489 4330726 -14521087 + L1ME LINE L1 5565 5814 -307 1998 152 35 16 chr4_random 4330843 4331211 -14520602 + THE1C LTR MaLR 1 375 0 2037 141 0 0 chr4_random 4331439 4331738 -14520075 - AluSg SINE Alu -5 305 7 2126 139 0 0 chr4_random 4334564 4334873 -14516940 - AluSx SINE Alu -3 309 1 268 286 12 0 chr4_random 4335984 4336068 -14515745 - HERVL LTR ERVL -2127 3527 3443 7710 25 0 0 chr4_random 4336713 4337612 -14514201 + L1PA3 LINE L1 5254 6152 -3 18042 36 1 6 chr4_random 4338380 4340649 -14511164 - L1P LINE L1 -2726 3420 1163 4587 21 0 0 chr4_random 4340649 4341180 -14510633 + L1PA3 LINE L1 5622 6152 -3 1481 243 95 80 chr4_random 4341259 4342361 -14509452 + L1ME2 LINE L1 388 1469 -4746 201 39 0 0 chr4_random 4342385 4342411 -14509402 + (TA)n Simple_repeat Simple_repeat 1 26 0 291 303 117 6 chr4_random 4342478 4342640 -14509173 + L1ME2 LINE L1 1690 1869 -4527 32 26 0 0 chr4_random 4342700 4342739 -14509074 + AT_rich Low_complexity Low_complexity 1 39 0 23 54 0 0 chr4_random 4342905 4342942 -14508871 + AT_rich Low_complexity Low_complexity 1 37 0 402 269 95 65 chr4_random 4343014 4343352 -14508461 + L1ME2 LINE L1 2197 2544 -3671 335 229 172 25 chr4_random 4343401 4343444 -14508369 - MLT2D LTR ERVL 0 414 379 330 26 0 0 chr4_random 4343444 4343483 -14508330 + (TG)n Simple_repeat Simple_repeat 2 40 0 335 229 172 25 chr4_random 4343483 4343561 -14508252 - MLT2D LTR ERVL -35 379 275 807 224 91 26 chr4_random 4343706 4343938 -14507875 - MLT2D LTR ERVL -167 247 1 364 157 43 0 chr4_random 4343938 4344008 -14507805 - ERVL-D LTR ERVL -7 5757 5685 11335 188 22 29 chr4_random 4344013 4346289 -14505524 - ERVL-D LTR ERVL -45 5719 3459 451 285 108 78 chr4_random 4346491 4347507 -14504306 + L1ME2 LINE L1 2717 3788 -2427 2460 65 0 3 chr4_random 4347507 4347814 -14503999 + AluY SINE Alu 1 306 -5 451 285 108 78 chr4_random 4347814 4348155 -14503658 + L1ME2 LINE L1 3788 4117 -2098 415 298 98 4 chr4_random 4348161 4348396 -14503417 + L1ME2 LINE L1 5814 6070 -163 1472 134 0 57 chr4_random 4348499 4348761 -14503052 + Tigger5 DNA MER2_type 2077 2323 0 195 391 23 16 chr4_random 4349128 4349256 -14502557 - L2 LINE L2 -590 2724 2596 1503 302 61 33 chr4_random 4349268 4349841 -14501972 - MLT1G1 LTR MaLR 0 595 7 767 349 125 18 chr4_random 4349871 4350598 -14501215 - L2 LINE L2 -759 2555 1751 1969 131 0 44 chr4_random 4350600 4350921 -14500892 + AluSx SINE Alu 3 309 -3 445 330 52 11 chr4_random 4351087 4351278 -14500535 - MIR SINE MIR -44 218 20 1675 151 0 14 chr4_random 4351563 4351847 -14499966 - AluY SINE Alu -31 280 1 283 350 84 7 chr4_random 4351896 4352039 -14499774 - L3 LINE CR1 -192 1385 1232 214 212 47 24 chr4_random 4353929 4354014 -14497799 + (CATATA)n Simple_repeat Simple_repeat 5 91 0 23 33 0 0 chr4_random 4555234 4555264 -14296549 + AT_rich Low_complexity Low_complexity 1 30 0 771 286 152 19 chr4_random 4556302 4556995 -14294818 - L1M4 LINE L1 -866 5280 4496 816 21 0 0 chr4_random 4557070 4557165 -14294648 - L1PA4 LINE L1 -13 6142 6048 937 290 44 29 chr4_random 4557243 4557693 -14294120 - L1M4 LINE L1 -1853 4293 3832 1705 191 35 19 chr4_random 4557693 4558060 -14293753 + THE1C LTR MaLR 3 375 0 937 290 44 29 chr4_random 4558060 4558133 -14293680 - L1M4 LINE L1 -2314 3832 3762 21 36 0 0 chr4_random 4558133 4558161 -14293652 + AT_rich Low_complexity Low_complexity 1 28 0 248 267 50 43 chr4_random 4558179 4558437 -14293376 - L1MEd LINE L1 -4965 1154 895 1849 193 22 3 chr4_random 4558572 4558930 -14292883 + MLT1A1 LTR MaLR 1 365 0 5398 249 72 51 chr4_random 4559064 4560821 -14290992 - Charlie6 DNA MER1_type -1403 2097 290 2551 119 14 0 chr4_random 4560821 4561191 -14290622 + THE1C LTR MaLR 1 375 0 5398 249 72 51 chr4_random 4561191 4561488 -14290325 - Charlie6 DNA MER1_type -3210 290 1 2373 99 0 3 chr4_random 4561493 4561807 -14290006 + AluSp SINE Alu 1 313 0 270 0 0 0 chr4_random 4561983 4562013 -14289800 + (TG)n Simple_repeat Simple_repeat 2 31 0 914 258 99 36 chr4_random 4562834 4563249 -14288564 - MLT1D LTR MaLR 0 505 65 1263 228 25 153 chr4_random 4563285 4563833 -14287980 - MLT1D-int LTR MaLR -1 1370 893 876 278 43 75 chr4_random 4563949 4564323 -14287490 - MLT1D-int LTR MaLR -476 895 534 1935 258 60 88 chr4_random 4564326 4565131 -14286682 - MER21B LTR ERV1 -81 782 1 642 239 53 64 chr4_random 4565613 4565801 -14286012 - MER5A DNA MER1_type -2 187 2 470 297 148 0 chr4_random 4565828 4565983 -14285830 + MER5A DNA MER1_type 12 189 0 581 198 186 6 chr4_random 4566255 4566432 -14285381 - MER3 DNA MER1_type 0 209 1 1926 132 11 3 chr4_random 4566922 4567209 -14284604 - AluSp SINE Alu -20 293 5 286 297 8 34 chr4_random 4567459 4567577 -14284236 + MER46C DNA MER2_type 6 120 -218 354 98 0 0 chr4_random 4567603 4567654 -14284159 + (CA)n Simple_repeat Simple_repeat 2 52 0 334 250 0 0 chr4_random 4567948 4568012 -14283801 + MER46C DNA MER2_type 162 225 -113 216 176 71 0 chr4_random 4569155 4569240 -14282573 + (TA)n Simple_repeat Simple_repeat 1 91 0 934 113 0 43 chr4_random 4569972 4570113 -14281700 + AluJb SINE Alu 1 135 -177 785 238 0 0 chr4_random 4570450 4570618 -14281195 + MLT1A1 LTR MaLR 146 313 -52 29 0 0 0 chr4_random 4570618 4570647 -14281166 + AT_rich Low_complexity Low_complexity 1 29 0 216 273 15 30 chr4_random 4570653 4570719 -14281094 - MER5A DNA MER1_type -123 66 2 181 345 71 18 chr4_random 4570719 4570832 -14280981 - MIR3 SINE MIR -36 172 54 30 59 0 0 chr4_random 4570863 4570914 -14280899 + AT_rich Low_complexity Low_complexity 1 51 0 467 299 58 11 chr4_random 4571056 4571230 -14280583 - MIR SINE MIR 0 262 81 383 155 11 46 chr4_random 4571883 4572057 -14279756 + (TA)n Simple_repeat Simple_repeat 2 169 0 1542 152 67 64 chr4_random 4572399 4572773 -14279040 - THE1C LTR MaLR 0 375 1 202 207 35 17 chr4_random 4573920 4573978 -14277835 - L3 LINE CR1 -865 712 654 452 350 129 26 chr4_random 4573984 4574372 -14277441 + L2 LINE L2 2316 2743 -571 1608 225 87 7 chr4_random 4576014 4576427 -14275386 + MER110 LTR ERV1 46 491 0 331 283 138 28 chr4_random 4576470 4576615 -14275198 + MIR SINE MIR 47 207 -55 485 283 66 26 chr4_random 4576639 4576791 -14275022 - MIR SINE MIR -62 200 43 23 33 0 0 chr4_random 4579500 4579530 -14272283 + AT_rich Low_complexity Low_complexity 1 30 0 2325 198 33 16 chr4_random 4579795 4580270 -14271543 - L1PA15-16 LINE L1 -2329 5255 4789 183 42 0 0 chr4_random 4580270 4580294 -14271519 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2325 198 33 16 chr4_random 4580294 4580320 -14271493 - L1PA15-16 LINE L1 -2795 4789 4765 1823 155 37 37 chr4_random 4580320 4580695 -14271118 + THE1C LTR MaLR 1 375 0 2325 198 33 16 chr4_random 4580695 4580737 -14271076 - L1PA15-16 LINE L1 -2819 4765 4702 5255 117 8 9 chr4_random 4580746 4581039 -14270774 - L1PA14 LINE L1 -1 6160 5868 2048 126 3 3 chr4_random 4581039 4581333 -14270480 - AluSx SINE Alu -17 295 2 5255 117 8 9 chr4_random 4581333 4582600 -14269213 - L1PA14 LINE L1 -293 5868 4562 1802 151 43 62 chr4_random 4582601 4582972 -14268841 + THE1B LTR MaLR 1 364 0 6085 112 6 0 chr4_random 4582972 4583828 -14267985 + THE1B-int LTR MaLR 1 861 -719 * 10079 184 51 13 chr4_random 4583824 4586806 -14265007 - L1PA12 LINE L1 -3903 3681 2 7337 238 16 12 chr4_random 4586811 4587715 -14264098 - L1PA15-16 LINE L1 -2884 4700 3801 1982 164 0 0 chr4_random 4587715 4588026 -14263787 - AluSx SINE Alu -1 311 1 7337 238 16 12 chr4_random 4588026 4589419 -14262394 - L1PA15-16 LINE L1 -3783 3801 2404 419 296 30 63 chr4_random 4590524 4590886 -14260927 - L1PA15-16 LINE L1 -7231 350 1 469 302 86 50 chr4_random 4591061 4591283 -14260530 + MIR SINE MIR 20 249 -13 1296 218 108 21 chr4_random 4591450 4591877 -14259936 - MER110A LTR ERV1 -4 464 1 28 29 0 0 chr4_random 4592080 4592115 -14259698 + AT_rich Low_complexity Low_complexity 1 35 0 1109 281 25 0 chr4_random 4592556 4592830 -14258983 + L1MD2 LINE L1 17 297 -6112 4152 239 46 25 chr4_random 4592854 4593145 -14258668 + L1MD2 LINE L1 4619 4902 -1717 1975 141 10 16 chr4_random 4593145 4593458 -14258355 + AluSx SINE Alu 1 311 -1 4152 239 46 25 chr4_random 4593458 4594889 -14256924 + L1MD2 LINE L1 4902 6426 -193 348 64 0 0 chr4_random 4594889 4594936 -14256877 + (CA)n Simple_repeat Simple_repeat 2 48 0 4152 239 46 25 chr4_random 4594936 4595129 -14256684 + L1MD2 LINE L1 6426 6613 -6 2130 124 0 0 chr4_random 4595129 4595435 -14256378 + AluSx SINE Alu 1 306 0 210 305 32 91 chr4_random 4596026 4596213 -14255600 - L2 LINE L2 -769 2545 2370 256 243 0 75 chr4_random 4597309 4597416 -14254397 + GA-rich Low_complexity Low_complexity 3 101 0 21 36 0 0 chr4_random 4597581 4597609 -14254204 + AT_rich Low_complexity Low_complexity 1 28 0 2484 68 3 0 chr4_random 4598030 4598339 -14253474 - AluY SINE Alu -1 310 1 359 240 24 24 chr4_random 4599269 4599394 -14252419 - L1MEc LINE L1 -4581 1815 1691 999 241 37 71 chr4_random 4599624 4600031 -14251782 + MER39 LTR ERV1 315 707 0 560 316 69 61 chr4_random 4600206 4600798 -14251015 - L1MEc LINE L1 -5473 732 136 573 132 55 0 chr4_random 4601278 4601369 -14250444 + HY3 scRNA scRNA 1 96 -5 22 0 0 0 chr4_random 4601591 4601613 -14250200 + AT_rich Low_complexity Low_complexity 1 22 0 1553 175 70 32 chr4_random 4602878 4603220 -14248593 - THE1A LTR MaLR 0 355 1 11454 105 9 0 chr4_random 4603220 4604786 -14247027 - THE1B-int LTR MaLR 0 1580 1 1901 147 44 36 chr4_random 4604786 4605147 -14246666 - THE1B LTR MaLR 0 364 1 458 299 128 13 chr4_random 4605168 4605402 -14246411 - Charlie2 DNA MER1_type -2477 305 45 2051 125 3 3 chr4_random 4605659 4606003 -14245810 + AluSq SINE Alu 1 344 0 1337 200 60 38 chr4_random 4606509 4606909 -14244904 - LTR37A LTR ERV1 -3 423 15 3710 147 59 10 chr4_random 4607533 4608207 -14243606 - MER39 LTR ERV1 0 707 1 1305 130 4 4 chr4_random 4610414 4610644 -14241169 - L1MA2 LINE L1 0 6304 6075 1482 101 5 9 chr4_random 4610653 4610871 -14240942 - L1MA2 LINE L1 -299 6006 5790 20526 175 16 33 chr4_random 4610894 4612525 -14239288 - L1 LINE L1 -1136 6429 4771 1674 173 171 11 chr4_random 4612525 4612894 -14238919 + MSTA LTR MaLR 1 428 0 9178 152 3 44 chr4_random 4612896 4614302 -14237511 + MSTA-int LTR MaLR 3 1334 -246 1774 96 0 0 chr4_random 4614302 4614531 -14237282 + AluY SINE Alu 83 311 0 9178 152 3 44 chr4_random 4614531 4614769 -14237044 + MSTA-int LTR MaLR 1334 1580 0 2037 139 133 16 chr4_random 4614770 4615152 -14236661 + MSTA LTR MaLR 2 428 0 20526 175 16 33 chr4_random 4615152 4615449 -14236364 - L1 LINE L1 -2795 4770 4469 2069 137 8 40 chr4_random 4615449 4615851 -14235962 - L1MA1 LINE L1 0 6302 5914 20526 175 16 33 chr4_random 4615851 4620444 -14231369 - L1 LINE L1 -3096 4469 16 1160 257 69 72 chr4_random 4620446 4621026 -14230787 - L1ME LINE L1 -5234 836 259 1327 176 8 41 chr4_random 4621076 4621321 -14230492 + AluJb SINE Alu 1 237 -75 534 208 47 25 chr4_random 4621479 4621699 -14230114 - LTR48 LTR ERV1 0 729 572 612 244 153 6 chr4_random 4621724 4621900 -14229913 - LTR29 LTR ERV1 -292 330 129 318 241 0 46 chr4_random 4621894 4621981 -14229832 - MER34 LTR ERV1 -437 105 23 * 310 228 76 22 chr4_random 4623179 4623271 -14228542 - L1ME LINE L1 -5925 145 49 2761 94 9 7 chr4_random 4623484 4624105 -14227708 - PABL_B LTR ERV1 0 667 1 531 181 71 45 chr4_random 4624263 4624418 -14227395 - LTR45B LTR ERV1 0 489 331 292 285 31 46 chr4_random 4624821 4624853 -14226960 - MIR SINE MIR -38 224 193 2228 166 8 3 chr4_random 4624853 4625215 -14226598 + THE1B LTR MaLR 1 364 0 292 285 31 46 chr4_random 4625215 4625312 -14226501 - MIR SINE MIR -69 193 97 2387 196 87 44 chr4_random 4625379 4626057 -14225756 + MER39 LTR ERV1 1 707 0 2123 128 25 33 chr4_random 4627612 4627972 -14223841 - THE1B LTR MaLR -7 357 1 5304 223 56 32 chr4_random 4629246 4632169 -14219644 + L1MA5 LINE L1 1 2853 -4355 2039 79 0 82 chr4_random 4632169 4632509 -14219304 - AluY SINE Alu 0 318 4 5304 223 56 32 chr4_random 4632509 4632649 -14219164 + L1MA5 LINE L1 2853 2988 -4220 1246 241 41 21 chr4_random 4632649 4632768 -14219045 + AluJo SINE Alu 3 118 -194 208 51 26 26 chr4_random 4632768 4632807 -14219006 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1246 241 41 21 chr4_random 4632807 4632978 -14218835 + AluJo SINE Alu 118 299 -13 5304 223 56 32 chr4_random 4632978 4633387 -14218426 + L1MA5 LINE L1 2988 4513 -2695 474 246 0 8 chr4_random 4633381 4633499 -14218314 + L1MA5 LINE L1 4811 4927 -2281 * 3373 123 10 4 chr4_random 4633500 4633997 -14217816 - LTR3b LTR ERVK 0 500 1 1915 188 11 0 chr4_random 4633998 4634355 -14217458 + L1MA5 LINE L1 4924 5284 -1924 6782 59 11 25 chr4_random 4634355 4635640 -14216173 - L1PA8 LINE L1 -2 6170 4883 8195 98 3 1 chr4_random 4635642 4636811 -14215002 + L1PA8 LINE L1 3695 4866 -1280 2699 195 18 22 chr4_random 4636865 4637496 -14214317 + L1MA5 LINE L1 5783 6421 -941 1799 175 0 7 chr4_random 4637496 4637787 -14214026 + AluJo SINE Alu 1 289 -23 2699 195 18 22 chr4_random 4637787 4638034 -14213779 + L1MA5 LINE L1 6421 6667 -695 2653 170 9 15 chr4_random 4638045 4638579 -14213234 + L1MA5 LINE L1 6832 7362 0 1834 164 17 29 chr4_random 4639644 4639991 -14211822 + MER61A LTR ERV1 1 343 0 230 57 29 0 chr4_random 4640068 4640103 -14211710 + MADE1 DNA Mariner 45 80 0 275 181 32 57 chr4_random 4640118 4640216 -14211597 - MLT1I LTR MaLR 0 578 449 312 341 49 56 chr4_random 4640259 4640543 -14211270 - MLT1I LTR MaLR -109 300 19 1322 173 20 12 chr4_random 4641655 4641903 -14209910 - AluJo SINE Alu 0 312 63 226 277 95 68 chr4_random 4642349 4642497 -14209316 - MLT1H LTR MaLR -304 245 94 354 279 77 59 chr4_random 4644814 4645036 -14206777 - MIR SINE MIR -7 255 30 352 305 113 70 chr4_random 4645473 4645775 -14206038 - L1MEd LINE L1 -5514 605 291 2149 258 142 21 chr4_random 4646005 4646270 -14205543 + L1MEc LINE L1 841 1073 -5323 2282 91 3 0 chr4_random 4646270 4646568 -14205245 + AluSc SINE Alu 7 305 -4 2149 258 142 21 chr4_random 4646568 4647024 -14204789 + L1MEc LINE L1 1073 1472 -4924 510 194 0 0 chr4_random 4647024 4647132 -14204681 + L1MB5 LINE L1 6059 6166 -8 2149 258 142 21 chr4_random 4647132 4647673 -14204140 + L1MEc LINE L1 1472 2257 -4139 * 14867 176 88 52 chr4_random 4647669 4653167 -14198646 + L1MA1 LINE L1 9 5709 -1856 5949 113 22 11 chr4_random 4653164 4653947 -14197866 + L1MA1 LINE L1 6771 7568 -153 * 2146 68 8 0 chr4_random 4653947 4654210 -14197603 + AluY SINE Alu 35 299 -12 5949 113 22 11 chr4_random 4654210 4654365 -14197448 + L1MA1 LINE L1 7568 7720 -1 1953 255 47 23 chr4_random 4654364 4654525 -14197288 + L1MEc LINE L1 2200 2356 -3859 * 1031 207 148 23 chr4_random 4654525 4654830 -14196983 + MER2 DNA MER2_type 1 343 -1 1953 255 47 23 chr4_random 4654830 4655485 -14196328 + L1MEc LINE L1 2356 3035 -3180 1053 237 118 47 chr4_random 4655506 4655735 -14196078 + L1MEc LINE L1 3353 3564 -2651 189 0 0 0 chr4_random 4655735 4655756 -14196057 + (CA)n Simple_repeat Simple_repeat 2 22 0 1053 237 118 47 chr4_random 4655756 4656062 -14195751 + L1MEc LINE L1 3564 3926 -2289 1007 253 14 67 chr4_random 4656059 4656415 -14195398 + L1ME1 LINE L1 16 352 -6190 * 1372 234 72 41 chr4_random 4656418 4657104 -14194709 + L1ME1 LINE L1 5286 5988 -676 272 195 46 0 chr4_random 4657194 4657281 -14194532 - L1M4 LINE L1 -841 5305 5215 311 239 11 11 chr4_random 4657286 4657374 -14194439 + MLT1C LTR MaLR 66 153 -314 2023 169 2 66 chr4_random 4657384 4657780 -14194033 - MLT1B LTR MaLR 0 390 20 321 207 0 0 chr4_random 4657779 4657837 -14193976 + MLT1C LTR MaLR 29 86 -381 * 1105 239 56 11 chr4_random 4657863 4658148 -14193665 + MLT1C LTR MaLR 162 459 -8 437 165 180 9 chr4_random 4658157 4658268 -14193545 + L1ME1 LINE L1 5984 6116 -562 694 287 6 0 chr4_random 4658268 4658432 -14193381 - MER41D LTR ERV1 0 557 393 1458 272 33 31 chr4_random 4658827 4659368 -14192445 + L1ME1 LINE L1 6119 6660 -4 28 0 0 0 chr4_random 4659371 4659399 -14192414 + AT_rich Low_complexity Low_complexity 1 28 0 368 361 41 18 chr4_random 4659410 4659629 -14192184 - L2 LINE L2 -455 2859 2636 4582 151 59 79 chr4_random 4659629 4661071 -14190742 + pTR5 LTR ERV1 748 2296 -142 807 316 85 27 chr4_random 4661086 4661605 -14190208 - L2 LINE L2 -675 2639 2091 580 262 12 36 chr4_random 4661907 4662075 -14189738 + MIR SINE MIR 97 260 -2 3677 166 22 38 chr4_random 4662780 4663540 -14188273 - LTR5 LTR ERVK 0 969 222 385 124 0 112 chr4_random 4663803 4663892 -14187921 - L1PA12 LINE L1 0 6168 6090 2251 246 78 31 chr4_random 4663898 4664601 -14187212 - MER21B LTR ERV1 -108 755 20 404 261 0 11 chr4_random 4664627 4664715 -14187098 - MER21B LTR ERV1 -776 87 1 243 61 0 0 chr4_random 4665834 4665867 -14185946 + (TG)n Simple_repeat Simple_repeat 2 34 0 271 202 170 11 chr4_random 4666548 4666642 -14185171 - MLT1I LTR MaLR 0 409 301 305 291 157 15 chr4_random 4667689 4667823 -14183990 + MERVL LTR ERVL 4433 4585 -900 8600 119 28 3 chr4_random 4667962 4669217 -14182596 - HSMAR1 DNA Mariner 0 1287 2 964 311 105 27 chr4_random 4669232 4669746 -14182067 + MERVL LTR ERVL 4825 5378 -386 231 330 47 20 chr4_random 4670744 4670950 -14180863 - MIR SINE MIR -1 261 19 247 244 13 13 chr4_random 4671136 4671214 -14180599 + (TA)n Simple_repeat Simple_repeat 2 79 0 2369 50 20 7 chr4_random 4671582 4671880 -14179933 - AluY SINE Alu -9 302 1 35 41 0 0 chr4_random 4672428 4672477 -14179336 + AT_rich Low_complexity Low_complexity 1 49 0 4161 139 40 61 chr4_random 4672546 4673383 -14178430 + Tigger1 DNA MER2_type 134 927 -1491 1128 172 7 131 chr4_random 4673395 4673686 -14178127 + AluJb SINE Alu 13 267 -45 2688 66 22 0 chr4_random 4673686 4674049 -14177764 + L1PA13 LINE L1 5791 6161 -2 8555 124 51 32 chr4_random 4674050 4675526 -14176287 + Tigger1 DNA MER2_type 916 2418 0 21 36 0 0 chr4_random 4675577 4675605 -14176208 + AT_rich Low_complexity Low_complexity 1 28 0 259 184 75 129 chr4_random 4676116 4676154 -14175659 + LTR47B LTR ERVL 280 319 -124 2047 157 66 20 chr4_random 4676154 4676561 -14175252 + MSTB LTR MaLR 1 426 0 259 184 75 129 chr4_random 4676561 4676669 -14175144 + LTR47B LTR ERVL 319 418 -25 2229 93 3 35 chr4_random 4676780 4677091 -14174722 - AluSp SINE Alu -12 301 1 273 247 0 0 chr4_random 4677117 4677198 -14174615 + (TA)n Simple_repeat Simple_repeat 1 81 0 33 0 0 0 chr4_random 4677277 4677310 -14174503 + AT_rich Low_complexity Low_complexity 1 33 0 192 434 44 0 chr4_random 4677320 4677433 -14174380 + L2 LINE L2 3173 3290 -23 30 45 0 0 chr4_random 4677515 4677559 -14174254 + AT_rich Low_complexity Low_complexity 1 44 0 1888 192 0 11 chr4_random 4677815 4678184 -14173629 + MLT1A1 LTR MaLR 1 365 0 217 204 0 41 chr4_random 4678815 4678864 -14172949 - L2 LINE L2 -5 3308 3262 188 352 33 0 chr4_random 4679441 4679532 -14172281 + MIR SINE MIR 146 239 -23 2866 192 107 74 chr4_random 4679579 4680335 -14171478 + MER21B LTR ERV1 34 814 -49 622 214 35 50 chr4_random 4680430 4680631 -14171182 - LTR48 LTR ERV1 0 787 590 846 204 86 20 chr4_random 4680651 4680887 -14170926 - LTR48 LTR ERV1 -269 454 240 1207 90 0 0 chr4_random 4680902 4681058 -14170755 - AluSg/x SINE Alu -2 310 155 1007 216 86 13 chr4_random 4681061 4681293 -14170520 - LTR48 LTR ERV1 -538 249 1 322 348 79 49 chr4_random 4681296 4681563 -14170250 + L2 LINE L2 2997 3271 -1 383 288 167 19 chr4_random 4682337 4682552 -14169261 - MIR SINE MIR 0 262 16 1823 109 47 0 chr4_random 4683212 4683468 -14168345 - AluSg SINE Alu -9 301 34 2835 13 0 0 chr4_random 4683854 4684162 -14167651 - AluYb8 SINE Alu -10 308 1 21 82 0 0 chr4_random 4684218 4684267 -14167546 + AT_rich Low_complexity Low_complexity 1 49 0 646 315 47 21 chr4_random 4684467 4684702 -14167111 + MIR SINE MIR 1 241 -21 357 342 38 6 chr4_random 4684753 4684911 -14166902 - MIR SINE MIR -98 164 2 263 312 28 43 chr4_random 4685077 4685218 -14166595 - MIR SINE MIR -121 141 3 285 246 97 32 chr4_random 4685262 4685469 -14166344 - L1M4 LINE L1 -328 5793 5607 383 180 189 0 chr4_random 4685621 4685732 -14166081 - LTR16A1 LTR ERVL -2 455 324 320 314 41 37 chr4_random 4686109 4686410 -14165403 - ERVL LTR ERVL -178 5309 5048 1792 138 166 14 chr4_random 4686743 4686932 -14164881 - MSTA LTR MaLR 0 428 269 180 0 0 0 chr4_random 4686932 4686952 -14164861 + (GA)n Simple_repeat Simple_repeat 2 21 0 1792 138 166 14 chr4_random 4686952 4687111 -14164702 - MSTA LTR MaLR -159 269 27 1563 200 29 20 chr4_random 4687586 4687927 -14163886 - MER2 DNA MER2_type 0 345 1 1909 110 0 0 chr4_random 4689276 4689540 -14162273 - MER11B LTR ERVK 0 1236 973 599 103 0 0 chr4_random 4689644 4689731 -14162082 + AluSg/x SINE Alu 218 304 -5 509 212 252 0 chr4_random 4691214 4691365 -14160448 + MER5A DNA MER1_type 1 189 0 214 321 45 22 chr4_random 4691451 4691585 -14160228 + L2 LINE L2 3170 3306 -7 307 210 0 0 chr4_random 4692216 4692297 -14159516 + C-rich Low_complexity Low_complexity 1 81 0 1095 302 73 31 chr4_random 4692624 4692869 -14158944 - MLT2F LTR ERVL 0 663 430 2616 137 26 0 chr4_random 4692869 4693284 -14158529 + MSTA LTR MaLR 1 426 -2 1095 302 73 31 chr4_random 4693284 4693645 -14158168 - MLT2F LTR ERVL -233 430 29 23 33 0 0 chr4_random 4695141 4695171 -14156642 + AT_rich Low_complexity Low_complexity 1 30 0 5034 156 41 7 chr4_random 4695651 4696576 -14155237 - Tigger3b DNA MER2_type -1 1230 274 630 164 0 19 chr4_random 4696574 4696678 -14155135 - Tigger3b DNA MER2_type -1129 102 1 * 217 185 12 74 chr4_random 4696844 4696925 -14154888 + T-rich Low_complexity Low_complexity 3 78 0 186 43 0 0 chr4_random 4696957 4696980 -14154833 + (TAGG)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr4_random 4697048 4697076 -14154737 + AT_rich Low_complexity Low_complexity 1 28 0 2423 228 88 12 chr4_random 4697972 4698577 -14153236 + HERV16 LTR ERVL 1144 1794 -3891 2720 247 27 73 chr4_random 4698600 4699370 -14152443 + HERV16 LTR ERVL 2562 3296 -2389 1100 231 39 23 chr4_random 4699836 4700092 -14151721 + LTR53 LTR ERVL 260 519 0 258 255 71 0 chr4_random 4700107 4700205 -14151608 - Charlie2 DNA MER1_type -237 2625 2521 205 283 0 0 chr4_random 4702816 4702876 -14148937 + A-rich Low_complexity Low_complexity 1 60 0 295 156 0 0 chr4_random 4703206 4703271 -14148542 + AluSc SINE Alu 1 44 -255 1603 63 0 0 chr4_random 4703271 4703495 -14148318 + AluSc SINE Alu 90 313 0 27 0 0 0 chr4_random 4703534 4703561 -14148252 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr4_random 4703585 4703606 -14148207 + AT_rich Low_complexity Low_complexity 1 21 0 560 297 114 53 chr4_random 4705203 4705422 -14146391 + LTR16A1 LTR ERVL 1 205 -252 482 191 113 17 chr4_random 4705422 4705537 -14146276 + FLAM_A SINE Alu 1 126 -7 560 297 114 53 chr4_random 4705537 4705748 -14146065 + LTR16A1 LTR ERVL 205 457 0 299 313 160 31 chr4_random 4706549 4706837 -14144976 + HERV16 LTR ERVL 883 1207 -3789 2454 130 13 10 chr4_random 4706911 4707304 -14144509 - L1PA15 LINE L1 -4 6161 5768 436 333 17 22 chr4_random 4707361 4707541 -14144272 + HERV16 LTR ERVL 1942 2120 -2876 492 303 56 28 chr4_random 4707596 4707774 -14144039 + HERV16 LTR ERVL 2660 2842 -2154 628 324 50 30 chr4_random 4707865 4708229 -14143584 + HERV16 LTR ERVL 3050 3420 -2065 270 0 0 0 chr4_random 4708453 4708483 -14143330 + (CA)n Simple_repeat Simple_repeat 2 31 0 319 312 99 32 chr4_random 4708494 4708715 -14143098 - HAL1 LINE L1 -829 1678 1443 312 311 138 46 chr4_random 4708743 4709003 -14142810 - L1MEd LINE L1 -4878 1241 958 487 331 41 8 chr4_random 4709042 4709308 -14142505 - HAL1 LINE L1 -1422 1085 811 330 182 0 0 chr4_random 4711103 4711169 -14140644 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1848 158 3 0 chr4_random 4712545 4712830 -14138983 + AluSx SINE Alu 3 288 -24 1563 211 46 46 chr4_random 4712892 4713281 -14138532 - MLT2C1 LTR ERVL -8 389 1 417 313 39 39 chr4_random 4714708 4714887 -14136926 + L2 LINE L2 3135 3313 0 1986 69 0 0 chr4_random 4715061 4715308 -14136505 + AluY SINE Alu 36 282 -29 22 0 0 0 chr4_random 4715963 4715985 -14135828 + AT_rich Low_complexity Low_complexity 1 22 0 700 296 89 32 chr4_random 4716246 4716510 -14135303 + L1MEc LINE L1 34 326 -6070 2147 104 3 7 chr4_random 4716510 4716835 -14134978 - AluSq SINE Alu 0 313 1 700 296 89 32 chr4_random 4716835 4716942 -14134871 + L1MEc LINE L1 326 426 -5970 375 285 35 52 chr4_random 4716942 4717015 -14134798 + L1MEc LINE L1 1103 1176 -5220 186 43 0 0 chr4_random 4717015 4717038 -14134775 + (CAAAA)n Simple_repeat Simple_repeat 4 26 0 375 285 35 52 chr4_random 4717038 4717136 -14134677 + L1MEc LINE L1 1176 1271 -5125 518 219 49 12 chr4_random 4717136 4717300 -14134513 + L1M4 LINE L1 5094 5263 -883 1320 242 43 3 chr4_random 4717667 4717954 -14133859 - MER89 LTR ERV1 -3 556 282 189 0 0 0 chr4_random 4717954 4717975 -14133838 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1320 242 43 3 chr4_random 4717975 4718087 -14133726 - MER89 LTR ERV1 -277 282 5 28552 41 1 2 chr4_random 4718307 4722643 -14129170 - L1PA4 LINE L1 0 6155 1827 1966 143 20 31 chr4_random 4723060 4723410 -14128403 + MER7A DNA MER2_type 1 344 -2 24 0 0 0 chr4_random 4724814 4724838 -14126975 + AT_rich Low_complexity Low_complexity 1 24 0 605 263 26 16 chr4_random 4725395 4725585 -14126228 + L1MB8 LINE L1 5945 6136 -42 228 200 0 0 chr4_random 4726263 4726313 -14125500 + (CA)n Simple_repeat Simple_repeat 2 51 0 221 209 44 11 chr4_random 4729046 4729137 -14122676 + (TTATA)n Simple_repeat Simple_repeat 2 95 0 307 278 70 17 chr4_random 4729322 4729437 -14122376 - MER91B DNA MER1_type -69 121 1 342 333 96 13 chr4_random 4729489 4729645 -14122168 + LTR33 LTR ERVL 43 211 -310 7231 43 5 1 chr4_random 4729774 4730802 -14121011 + L1PA5 LINE L1 5119 6149 -5 22 0 0 0 chr4_random 4730969 4730991 -14120822 + AT_rich Low_complexity Low_complexity 1 22 0 453 296 33 7 chr4_random 4731040 4731192 -14120621 - MER117 DNA MER1_type -6 191 36 230 0 33 0 chr4_random 4731607 4731637 -14120176 + (TC)n Simple_repeat Simple_repeat 2 32 0 234 143 0 0 chr4_random 4731637 4731686 -14120127 + (TA)n Simple_repeat Simple_repeat 2 50 0 2964 74 20 5 chr4_random 4732223 4732617 -14119196 - MLT2A1 LTR ERVL -44 400 1 295 282 0 13 chr4_random 4733077 4733155 -14118658 + MLT1J LTR MaLR 2 78 -433 239 225 0 42 chr4_random 4733235 4733306 -14118507 + MLT1L LTR MaLR 206 273 -342 410 275 8 17 chr4_random 4784855 4784975 -14066838 + L2 LINE L2 3187 3305 -8 1535 148 109 0 chr4_random 4785378 4785634 -14066179 - AluSp SINE Alu -29 284 1 938 131 95 12 chr4_random 4786009 4786200 -14065613 - MER4E LTR ERV1 -7 759 399 391 301 56 7 chr4_random 4787811 4787954 -14063859 - MIR SINE MIR 0 262 113 262 268 134 0 chr4_random 4788151 4788248 -14063565 + L2 LINE L2 2373 2482 -832 288 392 36 11 chr4_random 4788758 4789002 -14062811 + L2 LINE L2 2801 3053 -219 1211 196 93 37 chr4_random 4789003 4789325 -14062488 + MLT2B1 LTR ERVL 1 340 -180 1312 211 71 20 chr4_random 4789648 4790054 -14061759 + MER39 LTR ERV1 1 476 -231 716 194 8 0 chr4_random 4790059 4790193 -14061620 - FLAM_C SINE Alu -8 135 1 998 178 74 13 chr4_random 4790194 4790425 -14061388 + MER39 LTR ERV1 463 707 0 210 118 0 0 chr4_random 4792210 4792244 -14059569 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 218 271 10 83 chr4_random 4793004 4793100 -14058713 - L2 LINE L2 0 3313 3225 2131 119 0 3 chr4_random 4793127 4793420 -14058393 + AluSg SINE Alu 1 292 -18 209 194 28 0 chr4_random 4793435 4793471 -14058342 - L2 LINE L2 -95 3218 3182 5026 149 37 27 chr4_random 4793600 4794750 -14057063 + L1PA16 LINE L1 4997 6157 -9 234 0 0 0 chr4_random 4794753 4794779 -14057034 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 205 335 33 92 chr4_random 4795305 4795457 -14056356 - MIR3 SINE MIR -30 178 36 237 178 0 0 chr4_random 4795895 4795940 -14055873 + (TG)n Simple_repeat Simple_repeat 2 46 0 5762 116 17 12 chr4_random 4798366 4799261 -14052552 - L1PA15 LINE L1 -4 6161 5263 1956 128 13 16 chr4_random 4799387 4799699 -14052114 + AluSq SINE Alu 1 311 -2 25 31 0 0 chr4_random 4800000 4800032 -14051781 + AT_rich Low_complexity Low_complexity 1 32 0 2134 122 0 6 chr4_random 4800819 4801130 -14050683 + AluSc SINE Alu 1 309 0 23 0 0 0 chr4_random 4802725 4802748 -14049065 + AT_rich Low_complexity Low_complexity 1 23 0 217 214 14 71 chr4_random 4803612 4803682 -14048131 + L2 LINE L2 3244 3309 -4 289 273 0 0 chr4_random 4804625 4804691 -14047122 - MLT1L LTR MaLR -123 492 427 2160 81 13 36 chr4_random 4804725 4805032 -14046781 + AluSc SINE Alu 1 300 -9 346 278 56 21 chr4_random 4805063 4805207 -14046606 - MLT1L LTR MaLR -435 180 32 759 224 98 5 chr4_random 4805263 4805477 -14046336 - ORSL DNA AcHobo 0 275 42 1635 320 42 16 chr4_random 4808042 4808726 -14043087 + L2 LINE L2 1816 2517 -797 723 350 40 6 chr4_random 4808726 4809079 -14042734 + L2 LINE L2 2673 3033 -280 2336 104 3 0 chr4_random 4809489 4809797 -14042016 + AluSp SINE Alu 3 311 -2 500 252 56 115 chr4_random 4809973 4810243 -14041570 + MIR SINE MIR 8 261 -1 315 0 0 0 chr4_random 4810517 4810552 -14041261 + (TG)n Simple_repeat Simple_repeat 2 36 0 2003 109 35 0 chr4_random 4811373 4811656 -14040157 - AluSp SINE Alu -17 296 4 192 40 0 0 chr4_random 4812197 4812222 -14039591 + (CA)n Simple_repeat Simple_repeat 2 26 0 241 304 32 0 chr4_random 4815201 4815326 -14036487 - L1ME3A LINE L1 -3 6167 6039 961 310 40 4 chr4_random 4815449 4815902 -14035911 - L1ME3A LINE L1 -132 6101 5624 301 351 7 34 chr4_random 4815928 4816076 -14035737 - L1ME3A LINE L1 -5042 1354 1211 344 215 0 184 chr4_random 4816102 4816260 -14035553 - MER57B LTR ERV1 -232 200 43 30 27 0 0 chr4_random 4816481 4816518 -14035295 + AT_rich Low_complexity Low_complexity 1 37 0 40 21 0 0 chr4_random 4817171 4817218 -14034595 + AT_rich Low_complexity Low_complexity 1 47 0 39 38 0 0 chr4_random 4817830 4817883 -14033930 + AT_rich Low_complexity Low_complexity 1 53 0 1557 290 68 22 chr4_random 4820671 4821388 -14030425 - L1ME2 LINE L1 -7 6157 5408 3093 278 93 27 chr4_random 4821389 4823411 -14028402 - L1ME2 LINE L1 -783 5363 3209 967 265 89 32 chr4_random 4823478 4824228 -14027585 - L1MB5 LINE L1 -13 6095 5390 857 231 28 19 chr4_random 4824228 4824444 -14027369 - MER20 DNA MER1_type -1 218 1 967 265 89 32 chr4_random 4824444 4824457 -14027356 - L1MB5 LINE L1 -718 5390 5379 1632 192 0 44 chr4_random 4824457 4824775 -14027038 - AluJo SINE Alu -8 304 1 967 265 89 32 chr4_random 4824775 4824824 -14026989 - L1MB5 LINE L1 -729 5379 718 275 158 0 53 chr4_random 4824887 4824944 -14026869 - L1ME3A LINE L1 -5469 736 683 242 149 0 21 chr4_random 4825498 4825545 -14026268 - L1ME3A LINE L1 -5934 271 226 363 298 28 3 chr4_random 4826060 4826216 -14025597 - L1M4 LINE L1 -1276 4870 4705 27 49 0 0 chr4_random 4826336 4826377 -14025436 + AT_rich Low_complexity Low_complexity 1 41 0 287 286 143 0 chr4_random 4826432 4826537 -14025276 - MIR SINE MIR -124 138 19 501 145 0 0 chr4_random 4826607 4826683 -14025130 + AluJ/FLAM SINE Alu 8 83 -229 22 0 0 0 chr4_random 4827438 4827460 -14024353 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr4_random 4828303 4828333 -14023480 + AT_rich Low_complexity Low_complexity 1 30 0 283 298 10 19 chr4_random 4829719 4829823 -14021990 + MER58 DNA MER1_type 2 104 -111 22 70 0 0 chr4_random 4829936 4829979 -14021834 + AT_rich Low_complexity Low_complexity 1 43 0 278 286 254 16 chr4_random 4831234 4831360 -14020453 + MER5A DNA MER1_type 28 183 -6 21 0 0 0 chr4_random 4831558 4831579 -14020234 + AT_rich Low_complexity Low_complexity 1 21 0 234 335 75 18 chr4_random 4832195 4832422 -14019391 - MARNA DNA Mariner -28 558 319 5533 95 3 6 chr4_random 4833856 4834633 -14017180 - L1PA11 LINE L1 0 6174 5401 * 8189 222 51 32 chr4_random 4834621 4837432 -14014381 - L1PA12 LINE L1 -3348 4236 7 274 214 0 18 chr4_random 4837813 4837869 -14013944 + Tigger5 DNA MER2_type 1 55 -2268 314 258 22 0 chr4_random 4837874 4837963 -14013850 + Tigger5 DNA MER2_type 2231 2321 -2 * 1426 135 28 0 chr4_random 4837963 4838176 -14013637 + MER30 DNA MER1_type 11 229 -1 1201 268 110 40 chr4_random 4838211 4838764 -14013049 - MLT1E LTR MaLR 0 593 2 218 289 0 0 chr4_random 4838765 4838817 -14012996 + L2 LINE L2 3262 3313 0 1976 136 42 31 chr4_random 4838876 4839236 -14012577 + THE1B LTR MaLR 1 364 0 1228 253 81 43 chr4_random 4840485 4840928 -14010885 + MLT1C LTR MaLR 6 465 -2 414 278 100 37 chr4_random 4840990 4841034 -14010779 + HsTC2 DNA Tc2 1290 1330 -568 2424 29 4 0 chr4_random 4841034 4841315 -14010498 - AluY SINE Alu -9 302 21 414 278 100 37 chr4_random 4841315 4841651 -14010162 + HsTC2 DNA Tc2 1330 1892 -6 997 233 51 95 chr4_random 4842003 4842379 -14009434 + MLT2B1 LTR ERVL 14 512 -42 1057 175 26 5 chr4_random 4842411 4842605 -14009208 - Tigger2 DNA MER2_type -254 2464 2267 430 167 0 0 chr4_random 4842589 4842655 -14009158 - Tigger2 DNA MER2_type -2649 69 4 * 291 200 0 53 chr4_random 4842661 4842756 -14009057 - L1MC4 LINE L1 -1337 6705 6616 1018 250 191 36 chr4_random 4842817 4843153 -14008660 + MLT1E LTR MaLR 206 593 0 454 289 127 28 chr4_random 4843726 4844120 -14007693 + L1ME4a LINE L1 5626 6058 -63 200 100 25 0 chr4_random 4844120 4844160 -14007653 + (TA)n Simple_repeat Simple_repeat 2 42 0 411 381 4 33 chr4_random 4845063 4845333 -14006480 + MIR SINE MIR 1 262 0 874 195 21 93 chr4_random 4845373 4845609 -14006204 + MER20 DNA MER1_type 1 219 0 321 26 0 0 chr4_random 4846499 4846537 -14005276 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 252 267 5 129 chr4_random 4846547 4846749 -14005064 + L2 LINE L2 3016 3192 -121 689 242 112 28 chr4_random 4846770 4846985 -14004828 + MIR SINE MIR 20 252 -10 201 295 126 11 chr4_random 4847003 4847098 -14004715 + L2 LINE L2 3206 3311 -2 1585 168 159 11 chr4_random 4847191 4847561 -14004252 + MSTA LTR MaLR 4 428 0 9492 133 14 41 chr4_random 4847561 4849167 -14002646 + MSTA-int LTR MaLR 18 1580 0 1880 164 128 13 chr4_random 4849167 4849551 -14002262 + MSTA LTR MaLR 1 428 0 24 32 0 0 chr4_random 4849630 4849661 -14002152 + AT_rich Low_complexity Low_complexity 1 31 0 2286 140 22 0 chr4_random 4849867 4850223 -14001590 - THE1B LTR MaLR 0 364 1 1768 196 3 0 chr4_random 4850431 4850742 -14001071 - AluSx SINE Alu 0 312 1 322 283 62 0 chr4_random 4850900 4851013 -14000800 - MIR SINE MIR -64 198 79 2627 298 100 31 chr4_random 4851164 4853324 -13998489 + L1MEc LINE L1 25 2035 -4180 1998 155 45 20 chr4_random 4853324 4853679 -13998134 - THE1B LTR MaLR 0 364 1 2627 298 100 31 chr4_random 4853679 4854451 -13997362 + L1MEc LINE L1 2035 2752 -3463 994 256 93 0 chr4_random 4854451 4854763 -13997050 - MER58B DNA MER1_type 0 341 1 2627 298 100 31 chr4_random 4854763 4855118 -13996695 + L1MEc LINE L1 2752 3506 -2709 649 264 103 32 chr4_random 4855199 4855510 -13996303 + L1MEc LINE L1 3945 4277 -1938 39 22 0 0 chr4_random 4855547 4855593 -13996220 + AT_rich Low_complexity Low_complexity 1 46 0 1111 225 105 47 chr4_random 4855597 4856064 -13995749 + L1MEc LINE L1 4477 4970 -1245 24 0 0 0 chr4_random 4856551 4856575 -13995238 + AT_rich Low_complexity Low_complexity 1 24 0 29 70 0 0 chr4_random 4857178 4857235 -13994578 + AT_rich Low_complexity Low_complexity 1 57 0 4013 122 92 73 chr4_random 4857338 4858698 -13993115 + pTR5 LTR ERV1 743 2605 -1 233 143 0 20 chr4_random 4859135 4859184 -13992629 + (TCCC)n Simple_repeat Simple_repeat 3 50 0 28 29 0 0 chr4_random 4859844 4859879 -13991934 + AT_rich Low_complexity Low_complexity 1 35 0 257 200 63 11 chr4_random 4860082 4860177 -13991636 + MER113 DNA MER1_type? 21 120 -401 9431 216 29 12 chr4_random 4860998 4863232 -13988581 + L1 LINE L1 3060 5256 -890 1854 153 57 23 chr4_random 4863232 4863584 -13988229 - THE1B LTR MaLR 0 364 1 11090 106 8 4 chr4_random 4863584 4865158 -13986655 - THE1B-int LTR MaLR 0 1580 1 2208 112 72 23 chr4_random 4865158 4865505 -13986308 - THE1B LTR MaLR 0 364 1 9431 216 29 12 chr4_random 4865505 4865574 -13986239 + L1 LINE L1 5255 5403 -743 355 281 90 52 chr4_random 4865587 4866046 -13985767 - L1MC4 LINE L1 -129 7913 7360 1637 271 83 17 chr4_random 4866057 4866958 -13984855 - L1M4 LINE L1 -2629 3517 2557 256 311 73 57 chr4_random 4869353 4869530 -13982283 + L2 LINE L2 3118 3297 -16 268 254 0 0 chr4_random 4870401 4870460 -13981353 - L2 LINE L2 -1 3312 3254 1789 209 115 40 chr4_random 4870710 4871188 -13980625 + MLT2B2 LTR ERVL 1 514 -1 200 195 49 0 chr4_random 4871475 4871516 -13980297 + CT-rich Low_complexity Low_complexity 1 43 0 13491 203 33 25 chr4_random 4873338 4874308 -13977505 - L1MA4A LINE L1 -6 7359 6398 2123 109 0 0 chr4_random 4874308 4874633 -13977180 - AluSq SINE Alu 0 325 1 183 42 0 0 chr4_random 4874637 4874661 -13977152 + (TTA)n Simple_repeat Simple_repeat 2 25 0 13491 203 33 25 chr4_random 4874661 4877962 -13973851 - L1MA4A LINE L1 -969 6396 3020 183 100 0 0 chr4_random 4877962 4877992 -13973821 + (CAA)n Simple_repeat Simple_repeat 3 32 0 13491 203 33 25 chr4_random 4877992 4881036 -13970777 - L1MA4A LINE L1 -4345 3020 1 486 251 105 36 chr4_random 4881396 4881615 -13970198 - L1MCc LINE L1 -6176 247 14 2136 125 3 0 chr4_random 4881640 4881936 -13969877 + AluSx SINE Alu 1 297 -15 230 343 27 0 chr4_random 4882158 4882231 -13969582 - MIR SINE MIR -96 166 92 225 94 0 0 chr4_random 4883070 4883102 -13968711 + (TG)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr4_random 4883768 4883789 -13968024 + AT_rich Low_complexity Low_complexity 1 21 0 219 234 0 0 chr4_random 4883789 4883836 -13967977 - MIR3 SINE MIR -5 203 157 5288 274 58 29 chr4_random 4885034 4886327 -13965486 - L1M4 LINE L1 -1018 5128 3874 203 0 37 0 chr4_random 4886327 4886354 -13965459 + (TTATA)n Simple_repeat Simple_repeat 2 29 0 5288 274 58 29 chr4_random 4886354 4887661 -13964152 - L1M4 LINE L1 -2272 3874 2452 488 326 19 12 chr4_random 4888406 4888725 -13963088 - L1MEc LINE L1 -3572 2643 2323 1034 243 36 15 chr4_random 4888778 4889115 -13962698 - L1MEc LINE L1 -4130 2266 1923 413 19 19 0 chr4_random 4889121 4889175 -13962638 + (CA)n Simple_repeat Simple_repeat 2 56 0 556 298 28 32 chr4_random 4889273 4889525 -13962288 - L1MEc LINE L1 -5701 695 445 41 58 0 0 chr4_random 4890023 4890092 -13961721 + AT_rich Low_complexity Low_complexity 1 69 0 623 326 121 10 chr4_random 4890838 4891151 -13960662 + LTR16A LTR ERVL 1 348 -102 321 68 0 0 chr4_random 4891632 4891676 -13960137 + (TG)n Simple_repeat Simple_repeat 1 44 0 3539 197 5 117 chr4_random 4891774 4892667 -13959146 + MER54B LTR ERVL 1 793 0 249 246 15 15 chr4_random 4893360 4893425 -13958388 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1479 269 87 47 chr4_random 4894510 4895108 -13956705 + L1ME3A LINE L1 4747 5320 -850 1901 148 7 10 chr4_random 4895108 4895406 -13956407 + AluSx SINE Alu 1 297 -15 1479 269 87 47 chr4_random 4895406 4895525 -13956288 + L1ME3A LINE L1 5320 5433 -737 2011 173 24 3 chr4_random 4895525 4895906 -13955907 + MLT1B LTR MaLR 1 389 -1 1479 269 87 47 chr4_random 4895906 4896552 -13955261 + L1ME3A LINE L1 5433 6165 -5 314 289 128 60 chr4_random 4896624 4896842 -13954971 + L2 LINE L2 2704 2936 -378 314 286 29 71 chr4_random 4896933 4897073 -13954740 + L2 LINE L2 3180 3313 0 5497 152 27 18 chr4_random 4897414 4898630 -13953183 + L1MA4 LINE L1 5071 6300 0 1951 178 15 3 chr4_random 4898767 4899109 -13952704 - MER7A DNA MER2_type -2 344 1 237 272 140 9 chr4_random 4899879 4899993 -13951820 + L2 LINE L2 3139 3267 -5 261 98 0 0 chr4_random 4900978 4901019 -13950794 + (GA)n Simple_repeat Simple_repeat 1 41 0 197 176 0 0 chr4_random 4901021 4901055 -13950758 - L3 LINE CR1 -618 959 926 218 103 0 26 chr4_random 4901684 4901723 -13950090 + (TTTAA)n Simple_repeat Simple_repeat 4 41 0 266 123 0 110 chr4_random 4903041 4903114 -13948699 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 304 271 119 0 chr4_random 4903736 4903854 -13947959 + MIR SINE MIR 70 201 -61 958 302 140 30 chr4_random 4903856 4904774 -13947039 - L2 LINE L2 -5 3308 2282 403 265 70 76 chr4_random 4905138 4905323 -13946490 - MIR SINE MIR 0 262 79 21 36 0 0 chr4_random 4905418 4905446 -13946367 + AT_rich Low_complexity Low_complexity 1 28 0 248 178 40 30 chr4_random 4905536 4905637 -13946176 + (TTA)n Simple_repeat Simple_repeat 3 104 0 594 203 0 0 chr4_random 4906310 4906458 -13945355 + CT-rich Low_complexity Low_complexity 3 150 0 430 354 47 16 chr4_random 4907480 4907734 -13944079 - MIR SINE MIR 0 262 1 720 356 94 38 chr4_random 4908245 4909547 -13942266 - L2 LINE L2 -9 3304 1944 6223 94 7 1 chr4_random 4910280 4911138 -13940675 - L1PA8A LINE L1 -1 6130 5268 33 66 0 0 chr4_random 4911324 4911385 -13940428 + AT_rich Low_complexity Low_complexity 1 61 0 1931 163 24 6 chr4_random 4911702 4912033 -13939780 - MER1B DNA MER1_type 0 337 1 576 322 177 14 chr4_random 4913107 4913526 -13938287 - L2 LINE L2 -16 3297 2811 5586 30 0 0 chr4_random 4914688 4915366 -13936447 - L1P LINE L1 -3112 3034 2357 * 12997 30 1 1 chr4_random 4915363 4917650 -13934163 + L1PA3 LINE L1 3846 6132 -23 6253 36 0 1 chr4_random 4917908 4918688 -13933125 + L1P LINE L1 3060 3838 -2308 1891 205 9 33 chr4_random 4918816 4918919 -13932894 + L1MD1 LINE L1 5459 5563 -796 1219 143 30 30 chr4_random 4918919 4919149 -13932664 - MER30 DNA MER1_type 0 230 1 1891 205 9 33 chr4_random 4919149 4919464 -13932349 + L1MD1 LINE L1 5563 5867 -492 216 0 0 0 chr4_random 4919512 4919536 -13932277 + (TG)n Simple_repeat Simple_repeat 2 25 0 1027 132 28 6 chr4_random 4919557 4919739 -13932074 + L1MD1 LINE L1 6041 6226 -16 186 246 0 0 chr4_random 4920188 4920249 -13931564 + CT-rich Low_complexity Low_complexity 4 64 0 957 313 58 3 chr4_random 4920277 4920590 -13931223 + MLT1J LTR MaLR 117 446 -65 1078 192 35 10 chr4_random 4920738 4920936 -13930877 + MLT1A1 LTR MaLR 163 365 0 1254 210 26 4 chr4_random 4920937 4921209 -13930604 + L1MB3 LINE L1 5516 5793 -390 351 192 0 0 chr4_random 4921209 4921282 -13930531 + (CA)n Simple_repeat Simple_repeat 1 73 0 2090 173 3 13 chr4_random 4921294 4921681 -13930132 + L1MB3 LINE L1 5794 6176 -7 1952 180 42 10 chr4_random 4921951 4922335 -13929478 + MSTD LTR MaLR 1 396 0 674 246 149 5 chr4_random 4923845 4924040 -13927773 - MIR SINE MIR -21 241 19 219 297 16 0 chr4_random 4924690 4924754 -13927059 + GA-rich Low_complexity Low_complexity 3 67 0 280 300 0 14 chr4_random 4924827 4924897 -13926916 - L2 LINE L2 -51 3221 3153 862 205 46 153 chr4_random 4925800 4926409 -13925404 - MER34B LTR ERV1 0 565 1 273 344 25 25 chr4_random 4926519 4926679 -13925134 + L2 LINE L2 3105 3264 -49 24 53 0 0 chr4_random 4926688 4926726 -13925087 + AT_rich Low_complexity Low_complexity 1 38 0 43 56 0 0 chr4_random 4926912 4926983 -13924830 + AT_rich Low_complexity Low_complexity 1 71 0 6187 96 8 19 chr4_random 4927822 4929361 -13922452 - L1PA12 LINE L1 -15 6153 4621 5524 158 11 6 chr4_random 4929361 4930306 -13921507 + L1PA12 LINE L1 3660 4608 -1538 200 214 0 0 chr4_random 4930632 4930674 -13921139 + T-rich Low_complexity Low_complexity 2 43 0 228 256 182 0 chr4_random 4932725 4932846 -13918967 - Charlie2a DNA MER1_type -3 2859 2717 452 244 128 0 chr4_random 4932858 4933030 -13918783 - Charlie2a DNA MER1_type -1203 1659 1466 228 189 75 0 chr4_random 4933164 4933217 -13918596 - Charlie2a DNA MER1_type -2259 603 547 446 377 84 34 chr4_random 4933244 4933660 -13918153 - L2 LINE L2 -611 2703 2267 389 312 24 48 chr4_random 4933879 4934129 -13917684 - L1ME3A LINE L1 -4 6166 5923 238 176 59 44 chr4_random 4934551 4934619 -13917194 + MER34 LTR ERV1 462 530 -12 269 194 56 56 chr4_random 4934691 4934799 -13917014 - L1ME3A LINE L1 -2155 5840 5733 206 318 150 48 chr4_random 4934832 4935165 -13916648 - L2 LINE L2 -18 3295 2929 575 177 0 26 chr4_random 4935187 4935202 -13916611 - FLAM_C SINE Alu -169 143 129 2170 122 3 0 chr4_random 4935202 4935513 -13916300 - AluSx SINE Alu 0 312 1 575 177 0 26 chr4_random 4935513 4935610 -13916203 - FLAM_C SINE Alu -183 129 34 300 290 40 40 chr4_random 4936641 4936765 -13915048 - L1ME2 LINE L1 -298 5866 5743 1729 157 116 15 chr4_random 4936919 4937308 -13914505 + MSTA LTR MaLR 1 428 0 1219 271 85 13 chr4_random 4937360 4938136 -13913677 - MER69B DNA AcHobo -46 1180 335 360 189 14 0 chr4_random 4938142 4938216 -13913597 - MER69 DNA AcHobo -253 2273 2199 397 294 8 25 chr4_random 4938235 4938354 -13913459 - MER69 DNA AcHobo -914 312 196 2280 88 0 13 chr4_random 4939532 4939840 -13911973 + AluY SINE Alu 1 304 -7 180 111 0 0 chr4_random 4940517 4940544 -13911269 + (TG)n Simple_repeat Simple_repeat 2 28 0 1017 353 117 37 chr4_random 4941327 4942401 -13909412 + L2 LINE L2 1796 2955 -359 760 302 12 21 chr4_random 4943575 4943817 -13907996 - MIR SINE MIR -10 252 13 217 126 63 21 chr4_random 4944034 4944129 -13907684 + (TA)n Simple_repeat Simple_repeat 1 99 0 211 339 0 0 chr4_random 4945014 4945076 -13906737 + MER91 DNA MER1_type 79 140 0 1689 184 0 20 chr4_random 4946556 4946855 -13904958 - AluJo SINE Alu -19 293 1 455 329 43 29 chr4_random 4947330 4947537 -13904276 - MIR SINE MIR -31 231 22 2049 135 6 10 chr4_random 4948963 4949274 -13902539 + AluSg SINE Alu 1 310 0 32 67 0 0 chr4_random 4949406 4949466 -13902347 + AT_rich Low_complexity Low_complexity 1 60 0 236 283 0 0 chr4_random 4950284 4950344 -13901469 + MIR SINE MIR 203 262 0 305 156 0 0 chr4_random 4952242 4952287 -13899526 - Alu SINE Alu -258 45 1 989 265 28 44 chr4_random 4953356 4953718 -13898095 + L1MD3 LINE L1 7627 7982 -13 22 70 0 0 chr4_random 4954617 4954660 -13897153 + AT_rich Low_complexity Low_complexity 1 43 0 1109 211 118 48 chr4_random 4955623 4955681 -13896132 + MLT1A1 LTR MaLR 11 64 -301 1658 163 72 0 chr4_random 4955681 4955957 -13895856 + AluSx SINE Alu 1 296 -16 1109 211 118 48 chr4_random 4955957 4956230 -13895583 + MLT1A1 LTR MaLR 64 365 0 187 298 58 19 chr4_random 4956291 4956395 -13895418 + MIR SINE MIR 63 170 -92 234 222 0 0 chr4_random 4956626 4956680 -13895133 + (TA)n Simple_repeat Simple_repeat 1 54 0 348 273 149 70 chr4_random 4956885 4957127 -13894686 + MIR SINE MIR 2 262 0 354 237 133 11 chr4_random 4957209 4957309 -13894504 + MIR SINE MIR 42 151 -66 398 239 182 44 chr4_random 4958609 4958768 -13893045 - MER5A DNA MER1_type 0 189 9 221 339 65 0 chr4_random 4959116 4959178 -13892635 - MIR SINE MIR -170 92 27 186 43 0 0 chr4_random 4959346 4959369 -13892444 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1000 209 18 22 chr4_random 4959380 4959605 -13892208 - AluJo SINE Alu -84 228 5 243 0 0 0 chr4_random 4960019 4960046 -13891767 + (T)n Simple_repeat Simple_repeat 1 27 0 212 337 34 0 chr4_random 4961038 4961127 -13890686 - MIR SINE MIR -70 192 101 618 300 54 17 chr4_random 4961143 4961383 -13890430 - MIR SINE MIR -10 252 4 346 373 19 25 chr4_random 4961593 4961751 -13890062 - L3 LINE CR1 -11 1566 1410 322 339 107 8 chr4_random 4962110 4962231 -13889582 - L2 LINE L2 -1 3271 3139 26 30 0 0 chr4_random 4963706 4963739 -13888074 + AT_rich Low_complexity Low_complexity 1 33 0 245 296 194 0 chr4_random 4964954 4965052 -13886761 + L2 LINE L2 3136 3252 -20 549 284 71 10 chr4_random 4965758 4965955 -13885858 - L2 LINE L2 -1 3312 3104 217 222 0 0 chr4_random 4966258 4966303 -13885510 - MIR SINE MIR -64 198 154 28 48 0 0 chr4_random 4966674 4966716 -13885097 + AT_rich Low_complexity Low_complexity 1 42 0 23 86 0 0 chr4_random 4966932 4966990 -13884823 + AT_rich Low_complexity Low_complexity 1 58 0 1967 132 0 0 chr4_random 4969861 4970148 -13881665 + AluSx SINE Alu 5 291 -21 401 307 90 29 chr4_random 4970301 4970600 -13881213 + L1ME LINE L1 5355 5669 -493 21 0 0 0 chr4_random 4972609 4972630 -13879183 + AT_rich Low_complexity Low_complexity 1 21 0 1140 15 15 0 chr4_random 4974200 4974337 -13877476 + L1PA2 LINE L1 6017 6155 0 1906 174 82 20 chr4_random 4974537 4974927 -13876886 + MLT2C2 LTR ERVL 1 414 -50 329 131 16 0 chr4_random 4974927 4974988 -13876825 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 256 206 0 32 chr4_random 4974989 4975052 -13876761 + MLT2C2 LTR ERVL 460 520 0 21 0 0 0 chr4_random 4975929 4975950 -13875863 + AT_rich Low_complexity Low_complexity 1 21 0 1827 152 61 28 chr4_random 4977096 4977459 -13874354 - THE1C LTR MaLR 0 375 1 283 297 101 43 chr4_random 4978378 4978516 -13873297 + L2 LINE L2 3167 3312 -1 400 348 109 50 chr4_random 4979079 4979709 -13872104 - L2 LINE L2 -40 3232 2566 406 288 129 37 chr4_random 4980128 4980291 -13871522 + L2 LINE L2 347 524 -2790 1490 204 12 47 chr4_random 4980298 4980641 -13871172 + MLT1A1 LTR MaLR 4 334 -31 30347 114 8 24 chr4_random 4980698 4987176 -13864637 + L1PA7 LINE L1 8 6468 -1 194 0 39 0 chr4_random 4987326 4987352 -13864461 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 23539 28 2 0 chr4_random 4987352 4990950 -13860863 - L1PA2 LINE L1 -10 6145 2543 3005 38 0 0 chr4_random 4990953 4991320 -13860493 - L1PA2 LINE L1 -3867 2279 1913 269 206 0 0 chr4_random 4992860 4992923 -13858890 + (TA)n Simple_repeat Simple_repeat 2 64 0 2743 218 15 6 chr4_random 4992925 4993461 -13858352 + MER21B LTR ERV1 12 552 -311 1467 183 137 3 chr4_random 4993517 4993823 -13857990 - MER7A DNA MER2_type 0 346 2 261 246 0 0 chr4_random 4994049 4994110 -13857703 + (TGAA)n Simple_repeat Simple_repeat 4 64 0 2574 170 16 45 chr4_random 4994451 4994829 -13856984 - LOR1a LTR ERV1 0 497 136 2261 165 31 9 chr4_random 4994829 4995248 -13856565 - MSTA LTR MaLR 0 428 1 2574 170 16 45 chr4_random 4995248 4995380 -13856433 - LOR1a LTR ERV1 -361 136 2 26 82 0 0 chr4_random 4996431 4996492 -13855321 + AT_rich Low_complexity Low_complexity 1 61 0 407 279 12 17 chr4_random 4996712 4996921 -13854892 + (TA)n Simple_repeat Simple_repeat 1 207 0 1846 201 44 78 chr4_random 4998204 4998772 -13853041 - MER34B LTR ERV1 -6 559 11 315 0 0 0 chr4_random 4999375 4999410 -13852403 + (TG)n Simple_repeat Simple_repeat 2 36 0 348 24 0 0 chr4_random 4999418 4999459 -13852354 + (GA)n Simple_repeat Simple_repeat 2 42 0 329 227 40 0 chr4_random 5000541 5000616 -13851197 - MER63 DNA MER1_type -6 1054 977 305 250 0 0 chr4_random 5000618 5000686 -13851127 - MER63 DNA MER1_type -86 750 683 219 125 78 0 chr4_random 5000887 5000951 -13850862 + (TA)n Simple_repeat Simple_repeat 2 70 0 992 249 32 79 chr4_random 5001092 5001470 -13850343 + MLT1A1 LTR MaLR 4 363 -2 363 238 84 114 chr4_random 5001878 5002080 -13849733 - MIR SINE MIR -58 204 9 21 57 0 0 chr4_random 5002179 5002214 -13849599 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr4_random 5002953 5002994 -13848819 + AT_rich Low_complexity Low_complexity 1 41 0 268 264 11 23 chr4_random 5003722 5003809 -13848004 - MLT1J2 LTR MaLR -283 167 82 364 341 61 34 chr4_random 5004626 5004890 -13846923 + MLT1K LTR MaLR 160 430 -158 210 150 0 0 chr4_random 5004898 5004938 -13846875 + (GA)n Simple_repeat Simple_repeat 1 40 0 774 244 81 79 chr4_random 5005197 5005590 -13846223 - MSTD LTR MaLR -2 394 1 215 333 99 21 chr4_random 5005647 5005788 -13846025 - MIR SINE MIR -60 202 51 574 286 88 78 chr4_random 5005921 5006407 -13845406 - LTR16C LTR ERVL 0 491 1 28 48 0 0 chr4_random 5007495 5007537 -13844276 + AT_rich Low_complexity Low_complexity 1 42 0 1148 248 20 50 chr4_random 5007552 5007804 -13844009 - L1ME1 LINE L1 -4 6162 5925 491 118 26 0 chr4_random 5007804 5007880 -13843933 - MADE1 DNA Mariner -1 79 2 1148 248 20 50 chr4_random 5007880 5008023 -13843790 - L1ME1 LINE L1 -241 5925 5779 437 279 53 48 chr4_random 5008025 5008233 -13843580 + MER63A DNA MER1_type 1 209 -1 716 240 95 1 chr4_random 5008241 5008446 -13843367 - L1M3 LINE L1 -400 5768 5545 213 293 180 54 chr4_random 5008933 5009100 -13842713 + MIR SINE MIR 13 200 -62 184 138 0 0 chr4_random 5009115 5009144 -13842669 + L2 LINE L2 3191 3219 -94 1353 137 0 47 chr4_random 5009740 5009973 -13841840 - AluSg/x SINE Alu -4 308 87 1155 215 0 95 chr4_random 5010826 5011142 -13840671 - AluJo SINE Alu -16 286 1 23 0 0 0 chr4_random 5013766 5013789 -13838024 + AT_rich Low_complexity Low_complexity 1 23 0 288 91 13 52 chr4_random 5014135 5014212 -13837601 + (TTTAA)n Simple_repeat Simple_repeat 1 74 0 1599 268 95 40 chr4_random 5014271 5014722 -13837091 + L1MEc LINE L1 23 448 -5948 899 250 5 14 chr4_random 5014722 5014942 -13836871 + MER20 DNA MER1_type 2 219 0 1599 268 95 40 chr4_random 5014942 5015114 -13836699 + L1MEc LINE L1 448 609 -5787 297 0 0 0 chr4_random 5015114 5015147 -13836666 + (CA)n Simple_repeat Simple_repeat 2 34 0 1599 268 95 40 chr4_random 5015147 5015281 -13836532 + L1MEc LINE L1 609 823 -5573 * 4888 219 35 24 chr4_random 5015278 5017491 -13834322 + L1MC1 LINE L1 4134 6333 0 1651 215 18 37 chr4_random 5017487 5017551 -13834262 + L1MEc LINE L1 810 874 -5341 * 798 84 19 0 chr4_random 5017551 5017658 -13834155 + L1PA7 LINE L1 6046 6154 0 1651 215 18 37 chr4_random 5017658 5018306 -13833507 + L1MEc LINE L1 874 4805 -1410 952 296 52 15 chr4_random 5018295 5018697 -13833116 - L1M4 LINE L1 -1775 4371 3955 * 1394 218 7 0 chr4_random 5018692 5018999 -13832814 + L1PA16 LINE L1 4735 5043 -1103 * 5117 34 3 0 chr4_random 5018996 5019611 -13832202 - L1PA5 LINE L1 -1694 4452 3836 * 7367 44 0 0 chr4_random 5019610 5020927 -13830886 + L1PA5 LINE L1 4467 5783 -371 3017 52 3 0 chr4_random 5021359 5021742 -13830071 + L1PA5 LINE L1 5770 6153 -1 4920 159 21 3 chr4_random 5021767 5022876 -13828937 + L1PA16 LINE L1 5031 6158 -8 2807 217 64 71 chr4_random 5022887 5024123 -13827690 + L1ME1 LINE L1 4352 5577 -589 1257 124 114 130 chr4_random 5024123 5024422 -13827391 + AluSx SINE Alu 2 295 -7 2807 217 64 71 chr4_random 5024422 5025003 -13826810 + L1ME1 LINE L1 5577 6161 -5 324 0 0 0 chr4_random 5025846 5025882 -13825931 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 25 0 0 0 chr4_random 5025931 5025956 -13825857 + AT_rich Low_complexity Low_complexity 1 25 0 1021 276 129 31 chr4_random 5026712 5027168 -13824645 - MLT1D LTR MaLR 0 505 5 238 276 0 0 chr4_random 5027191 5027249 -13824564 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 1304 196 14 68 chr4_random 5027298 5027413 -13824400 + Tigger7 DNA MER2_type 1 121 -612 2456 67 0 6 chr4_random 5027413 5027726 -13824087 - AluY SINE Alu 0 311 1 1304 196 14 68 chr4_random 5027726 5027890 -13823923 + Tigger7 DNA MER2_type 121 265 -468 399 202 155 0 chr4_random 5027892 5027976 -13823837 + Tigger7 DNA MER2_type 2391 2487 0 3158 233 38 1 chr4_random 5027976 5028733 -13823080 + MER63C DNA MER1_type 138 922 -8 314 262 107 5 chr4_random 5029072 5029210 -13822603 + MIR SINE MIR 48 196 -58 381 176 0 0 chr4_random 5030354 5030428 -13821385 + GA-rich Low_complexity Low_complexity 2 75 0 2320 87 3 3 chr4_random 5030431 5030742 -13821071 + AluY SINE Alu 1 311 0 1087 151 0 12 chr4_random 5030742 5030914 -13820899 + AluSc SINE Alu 131 300 -9 1536 210 62 58 chr4_random 5032271 5032772 -13819041 - MLT1D LTR MaLR -1 504 2 21 0 0 0 chr4_random 5033315 5033336 -13818477 + AT_rich Low_complexity Low_complexity 1 21 0 2692 134 18 30 chr4_random 5033927 5034418 -13817395 + L1MA4A LINE L1 5812 6296 -7 22 0 0 0 chr4_random 5034469 5034491 -13817322 + AT_rich Low_complexity Low_complexity 1 22 0 4310 186 34 79 chr4_random 5034577 5034696 -13817117 + L1MC2 LINE L1 4918 5041 -1303 3057 155 37 4 chr4_random 5034696 5035206 -13816607 - MER1A DNA MER1_type 0 527 1 4310 186 34 79 chr4_random 5035206 5036572 -13815241 + L1MC2 LINE L1 5041 6337 -7 207 100 0 0 chr4_random 5037254 5037284 -13814529 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 435 323 83 30 chr4_random 5037299 5037565 -13814248 - L2 LINE L2 -26 3287 3008 350 250 171 83 chr4_random 5037572 5037800 -13814013 - L2 LINE L2 -4 3309 3062 1890 116 53 61 chr4_random 5037817 5038195 -13813618 - THE1C LTR MaLR 0 375 1 287 345 7 0 chr4_random 5038223 5038362 -13813451 - L1MC/D LINE L1 -2266 5778 5639 238 285 62 36 chr4_random 5038602 5038795 -13813018 - L1MC/D LINE L1 -4782 1602 1405 23 33 0 0 chr4_random 5039119 5039149 -13812664 + AT_rich Low_complexity Low_complexity 1 30 0 5123 150 30 4 chr4_random 5039149 5039288 -13812525 - L1PA15 LINE L1 -2 6163 6029 213 39 0 0 chr4_random 5039288 5039314 -13812499 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1970 155 0 3 chr4_random 5039317 5039607 -13812206 - AluSx SINE Alu -23 289 1 5123 150 30 4 chr4_random 5039607 5040507 -13811306 - L1PA15 LINE L1 -137 6028 5128 192 77 0 0 chr4_random 5040520 5040546 -13811267 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 404 315 39 22 chr4_random 5041182 5041363 -13810450 + MIR SINE MIR 9 192 -70 392 339 103 25 chr4_random 5042852 5043094 -13808719 + MIR SINE MIR 1 261 -1 41957 76 16 1 chr4_random 5043263 5048697 -13803116 + HERVL-A1 LTR ERVL 139 5654 0 3611 52 5 0 chr4_random 5048697 5049137 -13802676 + MLT2A1 LTR ERVL 1 442 -2 686 205 0 0 chr4_random 5049966 5050088 -13801725 + FLAM_A SINE Alu 4 125 -8 287 193 36 12 chr4_random 5051681 5051764 -13800049 + MER53 DNA DNA 105 189 0 310 204 89 10 chr4_random 5052023 5052104 -13799709 + AluSp SINE Alu 100 170 -133 1714 91 30 0 chr4_random 5052107 5052339 -13799474 + AluSp SINE Alu 71 309 -4 28 0 0 0 chr4_random 5053862 5053890 -13797923 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4_random 5054814 5054836 -13796977 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr4_random 5054896 5054917 -13796896 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 662 241 22 0 chr4_random 5055073 5055210 -13796603 + MER91A DNA MER1_type 40 179 -17 276 304 89 0 chr4_random 5055206 5055285 -13796528 + MER91A DNA MER1_type 90 175 -21 * 591 278 167 31 chr4_random 5055293 5055682 -13796131 + MLT1K LTR MaLR 147 588 0 223 336 55 31 chr4_random 5055874 5056002 -13795811 - L2 LINE L2 -217 3055 2925 189 0 0 0 chr4_random 5056127 5056148 -13795665 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 366 61 0 0 chr4_random 5056147 5056196 -13795617 + (TG)n Simple_repeat Simple_repeat 2 50 0 305 340 98 21 chr4_random 5056252 5056487 -13795326 - MLT1K LTR MaLR -335 253 1 367 326 15 15 chr4_random 5056691 5056823 -13794990 + MER94 DNA DNA 2 133 -1 481 259 83 64 chr4_random 5057153 5057570 -13794243 - MLT1J2 LTR MaLR -24 487 1 584 346 107 25 chr4_random 5057858 5058427 -13793386 + L2 LINE L2 2191 2806 -508 449 288 112 83 chr4_random 5058429 5058874 -13792939 - LTR33A LTR ERVL -4 519 62 250 315 43 94 chr4_random 5058928 5059204 -13792609 + L2 LINE L2 2816 3077 -195 25 0 0 0 chr4_random 5060037 5060062 -13791751 + AT_rich Low_complexity Low_complexity 1 25 0 192 214 107 0 chr4_random 5061330 5061386 -13790427 + MIR SINE MIR 139 200 -62 1306 193 17 38 chr4_random 5061395 5061781 -13790032 + MLT1C LTR MaLR 1 467 0 518 332 100 40 chr4_random 5062682 5063131 -13788682 + L1MA6 LINE L1 1217 1692 -5804 1405 282 58 23 chr4_random 5063510 5064364 -13787449 + L1MA6 LINE L1 2091 2974 -4522 * 4900 175 15 20 chr4_random 5064359 5065638 -13786175 + L1PB4 LINE L1 4863 6143 -13 283 243 45 27 chr4_random 5065559 5065670 -13786143 + L1MA4A LINE L1 6190 6302 -1 * 12929 190 33 31 chr4_random 5065650 5070520 -13781293 + L1MA6 LINE L1 2873 7716 -3 804 200 20 80 chr4_random 5071981 5072136 -13779677 + MER5A DNA MER1_type 1 143 -46 589 183 78 39 chr4_random 5072136 5072316 -13779497 + MER53 DNA DNA 1 187 -2 804 200 20 80 chr4_random 5072316 5072360 -13779453 + MER5A DNA MER1_type 143 188 -1 21 0 0 0 chr4_random 5072526 5072547 -13779266 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr4_random 5072960 5073003 -13778810 + AT_rich Low_complexity Low_complexity 1 43 0 436 98 81 2 chr4_random 5075166 5075245 -13776568 + LTR49 LTR ERV1 15 90 -505 597 202 61 80 chr4_random 5075266 5075479 -13776334 + LTR49 LTR ERV1 366 574 -21 2641 113 3 0 chr4_random 5075599 5075962 -13775851 + THE1B LTR MaLR 1 364 0 420 193 30 173 chr4_random 5076208 5076513 -13775300 + L1ME3A LINE L1 5693 5955 -215 232 249 77 83 chr4_random 5076586 5076755 -13775058 + L1ME3A LINE L1 5967 6134 -36 540 238 112 0 chr4_random 5078575 5078781 -13773032 - L1M4b LINE L1 -3782 3175 2947 279 282 68 0 chr4_random 5078901 5078941 -13772872 - L1MA10 LINE L1 -8 6326 6287 1747 259 65 47 chr4_random 5078941 5080403 -13771410 - L1ME1 LINE L1 -46 6514 5005 1237 271 54 22 chr4_random 5080405 5081073 -13770740 - L1ME1 LINE L1 -4225 2496 1771 310 240 64 119 chr4_random 5081101 5081447 -13770366 - L1M4b LINE L1 -4158 2980 2671 321 26 0 0 chr4_random 5081447 5081485 -13770328 + (CA)n Simple_repeat Simple_repeat 1 38 0 310 240 64 119 chr4_random 5081485 5081668 -13770145 - L1M4b LINE L1 -4467 2671 2480 27 0 0 0 chr4_random 5081769 5081796 -13770017 + AT_rich Low_complexity Low_complexity 1 27 0 2293 80 0 26 chr4_random 5081830 5082143 -13769670 - AluY SINE Alu -6 305 1 3030 228 61 56 chr4_random 5082149 5083017 -13768796 - L1M4b LINE L1 -4544 2415 1532 949 55 79 0 chr4_random 5083017 5083144 -13768669 - MER85 DNA T2_type 0 139 3 3030 228 61 56 chr4_random 5083144 5083944 -13767869 - L1M4b LINE L1 -5427 1532 738 7051 55 0 0 chr4_random 5083945 5085146 -13766667 - L1PA6 LINE L1 -2 6152 4949 10015 55 5 19 chr4_random 5085146 5086479 -13765334 + L1PA6 LINE L1 3639 4952 -1194 1814 280 124 40 chr4_random 5086472 5087168 -13764645 - L1M4b LINE L1 -6103 756 3 * 217 266 128 32 chr4_random 5087402 5087496 -13764317 + MIR SINE MIR 49 151 -111 22 0 0 0 chr4_random 5088022 5088044 -13763769 + AT_rich Low_complexity Low_complexity 1 22 0 1754 172 48 28 chr4_random 5088607 5088961 -13762852 + MLT2D LTR ERVL 1 361 -53 305 130 0 0 chr4_random 5089151 5089197 -13762616 + MLT2D LTR ERVL 369 414 0 2046 128 7 0 chr4_random 5089217 5089523 -13762290 - AluSx SINE Alu -4 308 1 262 347 32 16 chr4_random 5089545 5089669 -13762144 - MIR3 SINE MIR -48 160 35 633 249 10 66 chr4_random 5089699 5089896 -13761917 - MER5A DNA MER1_type -3 186 1 281 330 10 10 chr4_random 5090001 5090104 -13761709 + MIR3 SINE MIR 78 180 -28 632 309 124 15 chr4_random 5090316 5090720 -13761093 - LTR16A LTR ERVL -2 448 1 1670 169 57 11 chr4_random 5090841 5091190 -13760623 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr4_random 5092365 5092387 -13759426 + AT_rich Low_complexity Low_complexity 1 22 0 243 356 20 0 chr4_random 5093611 5093712 -13758101 + MIR SINE MIR 1 103 -159 2378 11 0 0 chr4_random 5093761 5094021 -13757792 - AluYa5 SINE Alu -14 297 38 2808 6 0 3 chr4_random 5094227 5094539 -13757274 - AluYa5 SINE Alu 0 311 1 182 313 42 21 chr4_random 5095919 5096015 -13755798 + MIR3 SINE MIR 102 199 -9 1935 143 27 15 chr4_random 5096073 5096408 -13755405 + MER44D DNA MER2_type 1 609 0 6257 46 7 0 chr4_random 5096943 5097708 -13754105 + L1PA7 LINE L1 5310 6079 -75 3083 271 49 16 chr4_random 5097708 5098839 -13752974 + L1ME LINE L1 4018 5185 -961 22 70 0 0 chr4_random 5098934 5098977 -13752836 + AT_rich Low_complexity Low_complexity 1 43 0 1699 251 23 17 chr4_random 5099199 5099712 -13752101 + L1ME LINE L1 5224 5735 -431 1726 93 0 0 chr4_random 5100236 5100472 -13751341 - L1PA8A LINE L1 -534 5597 5362 * 1890 99 3 0 chr4_random 5100470 5100752 -13751061 + L1PA8A LINE L1 5071 5353 -793 3547 167 15 41 chr4_random 5100752 5101430 -13750383 - Tigger1 DNA MER2_type -1757 661 2 346 333 57 23 chr4_random 5102183 5102360 -13749453 + MIR SINE MIR 34 216 -46 562 282 33 26 chr4_random 5103166 5103368 -13748445 - MIR SINE MIR -36 172 11 27 49 0 0 chr4_random 5103853 5103894 -13747919 + AT_rich Low_complexity Low_complexity 1 41 0 1976 160 8 30 chr4_random 5106289 5106652 -13745161 + THE1A LTR MaLR 1 355 0 10471 117 18 7 chr4_random 5106652 5108215 -13743598 + THE1A-int LTR MaLR 1 1580 0 1995 146 11 30 chr4_random 5108215 5108577 -13743236 + THE1A LTR MaLR 1 355 0 424 364 24 19 chr4_random 5108595 5108801 -13743012 - LTR16C LTR ERVL -9 482 276 258 95 0 0 chr4_random 5110558 5110600 -13741213 + (CA)n Simple_repeat Simple_repeat 1 42 0 294 29 0 0 chr4_random 5112299 5112334 -13739479 + (TG)n Simple_repeat Simple_repeat 2 36 0 197 295 36 96 chr4_random 5112371 5112537 -13739276 + MIR SINE MIR 57 212 -50 28 0 0 0 chr4_random 5114305 5114333 -13737480 + AT_rich Low_complexity Low_complexity 1 28 0 35 88 0 0 chr4_random 5114999 5115090 -13736723 + AT_rich Low_complexity Low_complexity 1 91 0 457 348 47 21 chr4_random 5115231 5115464 -13736349 - MIR SINE MIR 0 262 24 490 257 20 40 chr4_random 5115769 5115917 -13735896 + LTR33 LTR ERVL 102 246 -275 312 250 71 0 chr4_random 5117117 5117201 -13734612 - MLT1H LTR MaLR -12 537 448 855 247 24 56 chr4_random 5117232 5117519 -13734294 - MLT1H LTR MaLR -259 290 13 1986 122 0 7 chr4_random 5119476 5119794 -13732019 - AluSg1 SINE Alu 0 309 1 344 250 72 26 chr4_random 5120094 5120246 -13731567 - MER103 DNA DNA -6 160 2 207 108 27 0 chr4_random 5120531 5120568 -13731245 + A-rich Low_complexity Low_complexity 5 42 0 358 276 55 111 chr4_random 5120841 5121058 -13730755 - MIR SINE MIR -11 251 47 476 315 160 0 chr4_random 5121137 5121350 -13730463 + MIR SINE MIR 8 254 -8 672 277 111 24 chr4_random 5121603 5121892 -13729921 - HAL1 LINE L1 -697 1810 1497 283 254 132 18 chr4_random 5121909 5122023 -13729790 - MLT-int LTR MaLR -1017 718 592 2973 234 3 3 chr4_random 5122045 5122660 -13729153 - MSTD-int LTR MaLR -1119 616 2 1022 166 21 81 chr4_random 5122662 5122897 -13728916 - MSTD LTR MaLR 0 396 176 661 137 38 151 chr4_random 5122941 5123153 -13728660 - MSTD LTR MaLR -208 188 1 272 111 148 0 chr4_random 5123156 5123210 -13728603 - HAL1 LINE L1 -1471 1036 975 4160 229 62 47 chr4_random 5123230 5124020 -13727793 - L1MC4a LINE L1 0 7808 6983 204 97 0 0 chr4_random 5124020 5124051 -13727762 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 4160 229 62 47 chr4_random 5124051 5124754 -13727059 - L1MC4a LINE L1 -825 6983 6292 1336 202 115 60 chr4_random 5124755 5125191 -13726622 - MLT1C LTR MaLR 0 467 8 436 263 41 16 chr4_random 5125192 5125386 -13726427 - L1MD3 LINE L1 -1710 6285 6087 449 277 56 47 chr4_random 5125470 5125653 -13726160 - HAL1 LINE L1 -1534 973 786 297 75 0 0 chr4_random 5125653 5125693 -13726120 + (TG)n Simple_repeat Simple_repeat 1 40 0 449 277 56 47 chr4_random 5125693 5125722 -13726091 - HAL1 LINE L1 -1721 786 759 502 369 109 22 chr4_random 5126091 5126625 -13725188 - L2 LINE L2 -622 2692 2113 431 243 146 38 chr4_random 5126899 5127138 -13724675 - L1ME4a LINE L1 -21 6100 5836 227 284 15 0 chr4_random 5128512 5128579 -13723234 + MIR SINE MIR 187 254 -8 777 168 29 63 chr4_random 5129135 5129313 -13722500 - MSTB1 LTR MaLR -158 270 93 * 940 241 38 120 chr4_random 5129310 5129834 -13721979 + MER34 LTR ERV1 44 524 -18 1473 219 103 27 chr4_random 5130373 5130856 -13720957 - MLT2B1 LTR ERVL 0 520 1 206 136 34 51 chr4_random 5131307 5131366 -13720447 + T-rich Low_complexity Low_complexity 5 62 0 198 0 0 0 chr4_random 5131381 5131403 -13720410 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 231 284 78 39 chr4_random 5131961 5132063 -13719750 + L2 LINE L2 3195 3300 -13 245 118 20 0 chr4_random 5133135 5133186 -13718627 + CT-rich Low_complexity Low_complexity 2 53 0 227 333 49 0 chr4_random 5135581 5135662 -13716151 - L2 LINE L2 -32 3281 3197 808 212 67 16 chr4_random 5138069 5138262 -13713551 - MSTB1 LTR MaLR 0 432 230 436 95 81 0 chr4_random 5138275 5138349 -13713464 - MSTB1 LTR MaLR -352 80 1 3605 162 46 23 chr4_random 5138682 5139417 -13712396 - Tigger3(Golem) DNA MER2_type -1 3028 2277 614 196 0 0 chr4_random 5139413 5139515 -13712298 - Tigger3(Golem) DNA MER2_type -2926 103 2 * 220 339 47 16 chr4_random 5139589 5139716 -13712097 + L2 LINE L2 2227 2357 -957 348 250 116 64 chr4_random 5139977 5140149 -13711664 + MIR SINE MIR 49 229 -33 1986 194 6 6 chr4_random 5140876 5141237 -13710576 + MLT1A1 LTR MaLR 5 365 0 259 343 69 62 chr4_random 5141378 5141813 -13710000 + L2 LINE L2 2185 2622 -692 430 284 31 24 chr4_random 5141842 5141969 -13709844 + MIR SINE MIR 3 130 -132 301 354 42 21 chr4_random 5141964 5142108 -13709705 + L2 LINE L2 2948 3094 -178 * 180 111 0 0 chr4_random 5145042 5145069 -13706744 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 788 300 14 0 chr4_random 5145101 5145311 -13706502 - MIR SINE MIR 0 262 50 397 419 38 31 chr4_random 5149424 5149713 -13702100 + L2 LINE L2 2972 3262 -10 312 395 57 11 chr4_random 5150194 5150457 -13701356 + L2 LINE L2 3017 3291 -22 21 36 0 0 chr4_random 5152086 5152114 -13699699 + AT_rich Low_complexity Low_complexity 1 28 0 323 356 78 29 chr4_random 5152452 5152657 -13699156 - MIR SINE MIR -46 216 2 355 308 178 56 chr4_random 5152801 5153302 -13698511 + L2 LINE L2 2761 3312 -1 6439 72 56 10 chr4_random 5154000 5155251 -13696562 - L1PA7 LINE L1 -1 6153 4879 10296 109 7 2 chr4_random 5155251 5156713 -13695100 - L1P3 LINE L1 -4991 1470 2 890 275 86 48 chr4_random 5157133 5157898 -13693915 + L1MC2 LINE L1 788 1537 -4869 390 241 35 7 chr4_random 5157986 5158131 -13693682 + L1MC2 LINE L1 3001 3149 -3257 1219 237 67 3 chr4_random 5158140 5158528 -13693285 + L1MC2 LINE L1 4688 5100 -1306 245 109 43 22 chr4_random 5158547 5158593 -13693220 + Tigger5 DNA MER2_type 2245 2291 -32 234 220 0 20 chr4_random 5158607 5158657 -13693156 - Alu SINE Alu -8 294 246 569 208 8 39 chr4_random 5158682 5158812 -13693001 - FLAM_C SINE Alu -6 127 2 501 161 25 0 chr4_random 5158812 5158893 -13692920 + Tigger5 DNA MER2_type 2241 2323 0 4488 193 29 21 chr4_random 5158893 5160291 -13691522 + L1MC2 LINE L1 5103 6504 -100 774 175 0 15 chr4_random 5160295 5160432 -13691381 + MER20 DNA MER1_type 85 219 0 988 168 11 37 chr4_random 5161320 5161510 -13690303 + MER20 DNA MER1_type 35 219 0 1490 144 58 133 chr4_random 5161670 5162046 -13689767 - MER7A DNA MER2_type 0 346 1 1764 140 30 0 chr4_random 5263347 5263612 -13588201 - AluJb SINE Alu -39 273 1 2526 80 3 0 chr4_random 5263626 5263938 -13587875 - AluSp SINE Alu 0 313 1 232 167 93 0 chr4_random 5267421 5267475 -13584338 - MIR SINE MIR -58 204 146 302 167 107 24 chr4_random 5267514 5267598 -13584215 - MIR SINE MIR -58 204 114 385 328 38 8 chr4_random 5267887 5268018 -13583795 + MIR SINE MIR 13 147 -115 960 329 140 21 chr4_random 5268045 5268876 -13582937 - L2 LINE L2 -5 3308 2368 234 301 194 0 chr4_random 5268869 5268972 -13582841 + MIR SINE MIR 140 262 0 * 627 369 85 35 chr4_random 5269002 5269707 -13582106 + L2 LINE L2 2508 3236 -36 1223 196 161 15 chr4_random 5269919 5270260 -13581553 - MSTA LTR MaLR 0 428 38 513 165 0 10 chr4_random 5270408 5270505 -13581308 - MSTA LTR MaLR -332 96 1 1727 180 0 30 chr4_random 5270599 5270894 -13580919 + AluJb SINE Alu 1 286 -26 3078 128 44 2 chr4_random 5270993 5271470 -13580343 - LOR1a LTR ERV1 0 497 1 1969 160 12 62 chr4_random 5273744 5274150 -13577663 + MLT1B LTR MaLR 1 386 -4 2035 132 0 0 chr4_random 5274192 5274472 -13577341 + AluSx SINE Alu 1 280 -32 950 103 7 0 chr4_random 5274472 5274617 -13577196 + (GAAA)n Simple_repeat Simple_repeat 2 147 0 417 86 0 0 chr4_random 5274617 5274675 -13577138 + (GGGAA)n Simple_repeat Simple_repeat 2 59 0 1065 258 41 49 chr4_random 5275980 5276348 -13575465 - LTR16A LTR ERVL -8 442 78 280 336 34 21 chr4_random 5276425 5276660 -13575153 - HERV16 LTR ERVL -18 4978 4741 390 346 30 17 chr4_random 5276866 5277103 -13574710 - HERV16 LTR ERVL -701 4953 4714 287 284 0 39 chr4_random 5277165 5277267 -13574546 - HERV16 LTR ERVL -1092 4672 4575 331 288 44 38 chr4_random 5277270 5277430 -13574383 - HERV16 LTR ERVL -3251 1745 1585 22 0 0 0 chr4_random 5278632 5278654 -13573159 + AT_rich Low_complexity Low_complexity 1 22 0 1290 305 20 14 chr4_random 5278905 5279351 -13572462 - LTR16A LTR ERVL 0 450 2 295 262 48 10 chr4_random 5279969 5280072 -13571741 - LTR16C LTR ERVL -7 484 378 * 884 256 86 19 chr4_random 5280071 5280340 -13571473 - LTR16C LTR ERVL -62 429 143 246 338 88 72 chr4_random 5281274 5281444 -13570369 - L2 LINE L2 -452 2862 2696 1553 204 147 45 chr4_random 5281444 5281955 -13569858 - MER34B LTR ERV1 0 565 3 246 338 88 72 chr4_random 5281955 5282157 -13569656 - L2 LINE L2 -618 2696 2484 250 306 90 39 chr4_random 5282761 5283117 -13568696 + L1M4 LINE L1 2131 2504 -3642 704 311 105 12 chr4_random 5283198 5283495 -13568318 - MLT1G1 LTR MaLR -24 571 153 382 311 52 22 chr4_random 5283534 5283669 -13568144 - MLT1G1 LTR MaLR -456 139 1 5631 154 32 17 chr4_random 5283789 5285505 -13566308 + L1MA7 LINE L1 4556 6291 0 381 183 0 0 chr4_random 5285530 5285601 -13566212 - L1 LINE L1 -1520 4626 4556 26 74 0 0 chr4_random 5285783 5285837 -13565976 + AT_rich Low_complexity Low_complexity 1 54 0 343 279 221 0 chr4_random 5285885 5286039 -13565774 - MER5A DNA MER1_type -1 188 1 2744 7 0 0 chr4_random 5286040 5286341 -13565472 + AluYa5 SINE Alu 1 301 -10 22 39 0 39 chr4_random 5287822 5287841 -13563972 + AT_rich Low_complexity Low_complexity 1 19 -30 2192 129 0 7 chr4_random 5287841 5288150 -13563663 + AluSx SINE Alu 1 307 -5 22 39 0 39 chr4_random 5288150 5288181 -13563632 + AT_rich Low_complexity Low_complexity 19 49 0 184 325 26 26 chr4_random 5288238 5288315 -13563498 + MIR SINE MIR 86 162 -100 1866 106 60 4 chr4_random 5288697 5288985 -13562828 + AluSc SINE Alu 1 303 0 252 315 74 28 chr4_random 5289320 5289428 -13562385 - L2 LINE L2 -4 3268 3156 196 321 19 0 chr4_random 5289685 5289738 -13562075 - L2 LINE L2 -10 3262 3209 922 170 67 137 chr4_random 5291294 5291423 -13560390 + L1MC1 LINE L1 214 353 -6073 227 83 0 0 chr4_random 5291423 5291459 -13560354 + Tigger5 DNA MER2_type 2215 2250 -73 922 170 67 137 chr4_random 5291459 5291564 -13560249 + L1MC1 LINE L1 353 464 -5962 * 3742 202 39 48 chr4_random 5291555 5293713 -13558100 + L1MC1 LINE L1 4523 6588 -25 207 0 0 0 chr4_random 5293715 5293738 -13558075 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1900 156 42 20 chr4_random 5293741 5294099 -13557714 + MER47A DNA MER2_type 1 366 0 29 70 0 0 chr4_random 5294101 5294158 -13557655 + AT_rich Low_complexity Low_complexity 1 57 0 227 236 0 18 chr4_random 5294338 5294393 -13557420 + MIR SINE MIR 99 152 -110 1520 156 56 19 chr4_random 5294407 5294714 -13557099 - AluSx SINE Alu 0 322 6 229 309 55 77 chr4_random 5295069 5295289 -13556524 - MIR SINE MIR 0 262 48 379 291 40 46 chr4_random 5295633 5295784 -13556029 - MIR SINE MIR -73 189 40 366 61 0 0 chr4_random 5296772 5296821 -13554992 + (TG)n Simple_repeat Simple_repeat 1 49 0 2842 160 6 0 chr4_random 5297018 5297494 -13554319 - L1PA16 LINE L1 -5 6161 5683 2435 62 3 10 chr4_random 5297495 5297802 -13554011 - AluY SINE Alu -6 305 1 4352 92 18 83 chr4_random 5297810 5298600 -13553213 - L1MA1 LINE L1 -7 6295 5558 29 0 0 0 chr4_random 5299025 5299054 -13552759 + AT_rich Low_complexity Low_complexity 1 29 0 1901 144 3 49 chr4_random 5299054 5299381 -13552432 - AluSx SINE Alu 0 312 1 22 0 0 0 chr4_random 5300558 5300580 -13551233 + AT_rich Low_complexity Low_complexity 1 22 0 194 243 355 19 chr4_random 5301033 5301140 -13550673 + MIR SINE MIR 10 152 -110 204 250 0 78 chr4_random 5301156 5301220 -13550593 + L2 LINE L2 3204 3262 -10 27 29 0 0 chr4_random 5301535 5301569 -13550244 + AT_rich Low_complexity Low_complexity 1 34 0 308 294 55 55 chr4_random 5301892 5302038 -13549775 - L2 LINE L2 0 3272 3127 319 367 76 9 chr4_random 5302114 5302324 -13549489 + L2 LINE L2 2643 2866 -448 207 314 29 0 chr4_random 5302372 5302442 -13549371 + L2 LINE L2 3227 3298 -15 271 48 81 0 chr4_random 5302578 5302640 -13549173 + (TA)n Simple_repeat Simple_repeat 1 67 0 332 273 68 8 chr4_random 5302714 5302846 -13548967 + MER103 DNA DNA 26 165 -1 23 0 0 0 chr4_random 5304280 5304303 -13547510 + AT_rich Low_complexity Low_complexity 1 23 0 242 245 0 0 chr4_random 5304411 5304464 -13547349 + A-rich Low_complexity Low_complexity 1 53 0 279 0 0 0 chr4_random 5304510 5304541 -13547272 + (CA)n Simple_repeat Simple_repeat 2 32 0 421 337 126 5 chr4_random 5305511 5305701 -13546112 - MIR SINE MIR -4 258 46 33367 50 5 0 chr4_random 5305740 5309678 -13542135 - L1PA4 LINE L1 -1 6154 2186 1842 18 9 0 chr4_random 5309678 5309899 -13541914 - L1PA2 LINE L1 -1 6154 5932 33367 50 5 0 chr4_random 5309899 5310932 -13540881 - L1PA4 LINE L1 -3969 2186 1160 249 182 0 0 chr4_random 5311051 5311106 -13540707 + (TTTA)n Simple_repeat Simple_repeat 3 57 0 180 250 36 36 chr4_random 5311144 5311200 -13540613 + L2 LINE L2 1892 1947 -1367 2849 0 0 0 chr4_random 5311259 5311568 -13540245 + AluYa5 SINE Alu 1 309 -2 233 335 71 27 chr4_random 5311767 5312003 -13539810 + L2 LINE L2 3002 3267 -5 1185 212 65 98 chr4_random 5312379 5312776 -13539037 + MLT1B LTR MaLR 1 384 -6 182 299 107 46 chr4_random 5313756 5313953 -13537860 + L2 LINE L2 2624 2832 -482 257 240 16 168 chr4_random 5314257 5314382 -13537431 + L2 LINE L2 3200 3305 -8 21 71 0 0 chr4_random 5314470 5314512 -13537301 + AT_rich Low_complexity Low_complexity 1 42 0 227 269 66 48 chr4_random 5314519 5314686 -13537127 + L1ME4a LINE L1 5931 6100 -21 607 291 70 4 chr4_random 5314705 5314935 -13536878 - MLT1L LTR MaLR -14 601 357 397 249 89 80 chr4_random 5314985 5315222 -13536591 - MLT1L LTR MaLR -372 243 5 581 167 0 10 chr4_random 5317344 5317440 -13534373 + MLT1J LTR MaLR 79 173 -338 211 209 0 23 chr4_random 5319681 5319724 -13532089 + (TG)n Simple_repeat Simple_repeat 1 42 0 531 288 101 15 chr4_random 5321721 5321919 -13529894 - MIR SINE MIR -37 225 11 310 317 7 35 chr4_random 5321919 5322064 -13529749 + MER117 DNA MER1_type 1 141 -56 7373 37 3 0 chr4_random 5322083 5323420 -13528393 - L1PA5 LINE L1 -6 6148 4811 25106 56 2 0 chr4_random 5323420 5326641 -13525172 + L1P LINE L1 1122 4350 -1796 1486 221 3 3 chr4_random 5326985 5327293 -13524520 + AluJo SINE Alu 1 308 -4 1717 235 128 78 chr4_random 5327784 5328394 -13523419 + MER97a DNA MER1_type? 1 579 -315 1966 114 4 0 chr4_random 5328394 5328695 -13523118 + AluSg SINE Alu 1 302 0 1717 235 128 78 chr4_random 5328695 5328710 -13523103 + MER97a DNA MER1_type? 579 592 -302 2026 200 54 44 chr4_random 5328710 5329210 -13522603 + MLT1D LTR MaLR 1 505 0 1717 235 128 78 chr4_random 5329210 5329372 -13522441 + MER97a DNA MER1_type? 592 829 -65 232 291 87 29 chr4_random 5329686 5329789 -13522024 + L2 LINE L2 3204 3312 -1 6059 117 12 6 chr4_random 5331416 5332352 -13519461 + L1MA1 LINE L1 5362 6302 0 32 0 0 0 chr4_random 5332352 5332384 -13519429 + AT_rich Low_complexity Low_complexity 1 32 0 306 0 0 0 chr4_random 5332432 5332466 -13519347 + (TTA)n Simple_repeat Simple_repeat 3 36 0 7377 36 6 3 chr4_random 5332466 5333515 -13518298 - L1PA3 LINE L1 -18 6137 5089 510 16 0 0 chr4_random 5333515 5333577 -13518236 + L1PA3 LINE L1 5026 5087 -1059 11020 56 4 2 chr4_random 5333658 5335890 -13515923 + L1PA6 LINE L1 3933 6154 0 24 0 0 0 chr4_random 5336459 5336483 -13515330 + AT_rich Low_complexity Low_complexity 1 24 0 274 326 15 38 chr4_random 5336983 5337115 -13514698 + L2 LINE L2 3138 3266 -6 364 291 132 27 chr4_random 5337391 5337762 -13514051 - L1MEc LINE L1 -2053 4162 3753 623 241 7 0 chr4_random 5337888 5338029 -13513784 - Charlie1 DNA MER1_type 0 2761 2620 * 889 214 68 36 chr4_random 5338023 5338243 -13513570 - Charlie1 DNA MER1_type -2534 227 1 518 305 50 17 chr4_random 5338413 5338652 -13513161 + MLT1L LTR MaLR 359 605 -10 489 291 111 69 chr4_random 5338658 5339225 -13512588 - L1MEc LINE L1 -2467 3748 3158 25 31 0 0 chr4_random 5339275 5339307 -13512506 + AT_rich Low_complexity Low_complexity 1 32 0 290 299 57 19 chr4_random 5339374 5339531 -13512282 - L1ME4a LINE L1 -238 5883 5721 32 0 0 0 chr4_random 5339531 5339563 -13512250 + AT_rich Low_complexity Low_complexity 1 32 0 2325 154 30 14 chr4_random 5339568 5340008 -13511805 - L1MA4 LINE L1 -16 6284 5838 323 266 56 65 chr4_random 5341277 5341498 -13510315 - L1MEc LINE L1 -3864 2351 2171 2873 184 46 32 chr4_random 5341897 5342577 -13509236 - L1MB8 LINE L1 -13 6165 5477 6492 137 20 10 chr4_random 5342594 5344102 -13507711 - L1MA2 LINE L1 0 7723 6199 * 11615 162 66 11 chr4_random 5344095 5347420 -13504393 - L1MA2 LINE L1 -2634 4931 1417 831 180 39 48 chr4_random 5347417 5347859 -13503954 - L1MA2 LINE L1 -641 6961 14 * 23 33 0 0 chr4_random 5348227 5348257 -13503556 + AT_rich Low_complexity Low_complexity 1 30 0 1449 209 10 19 chr4_random 5349141 5349448 -13502365 - AluJo SINE Alu -8 304 1 26 30 0 0 chr4_random 5349884 5349917 -13501896 + AT_rich Low_complexity Low_complexity 1 33 0 1023 336 29 12 chr4_random 5350038 5350449 -13501364 + L1MA4 LINE L1 295 712 -5537 5022 254 78 23 chr4_random 5351761 5353573 -13498240 + L1MA4 LINE L1 539 2438 -3890 6463 171 28 6 chr4_random 5353576 5355780 -13496033 + L1MA4 LINE L1 4230 6481 -1 422 329 64 46 chr4_random 5356309 5356592 -13495221 - L2 LINE L2 -92 3221 2934 247 248 96 48 chr4_random 5356674 5356799 -13495014 - MER94 DNA DNA -1 133 3 858 20 55 14 chr4_random 5357438 5357584 -13494229 + (TAGA)n Simple_repeat Simple_repeat 1 152 0 21 36 0 0 chr4_random 5357772 5357800 -13494013 + AT_rich Low_complexity Low_complexity 1 28 0 185 333 45 0 chr4_random 5357962 5358028 -13493785 + L3 LINE CR1 930 998 -579 228 298 25 50 chr4_random 5358312 5358433 -13493380 + L3 LINE CR1 1234 1351 -226 1306 194 207 18 chr4_random 5358503 5359053 -13492760 - MER39 LTR ERV1 0 707 1 874 226 63 70 chr4_random 5359760 5360335 -13491478 + MER76 LTR ERV 1 637 -51 1268 214 58 23 chr4_random 5361046 5361388 -13490425 - L1MD1 LINE L1 0 6636 6283 2177 255 56 36 chr4_random 5361391 5361498 -13490315 - L1PA16 LINE L1 -9 6157 6054 1880 166 41 22 chr4_random 5361498 5361866 -13489947 - THE1C LTR MaLR 0 375 1 2177 255 56 36 chr4_random 5361866 5362028 -13489785 - L1PA16 LINE L1 -112 6054 5521 2664 195 60 42 chr4_random 5362028 5362940 -13488873 - L1MD1 LINE L1 -346 6290 5340 234 91 0 0 chr4_random 5362940 5362973 -13488840 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2664 195 60 42 chr4_random 5362973 5363064 -13488749 - L1MD1 LINE L1 -1296 5340 5252 3525 230 48 21 chr4_random 5363106 5363911 -13487902 - MER21B LTR ERV1 -21 842 16 3622 239 76 42 chr4_random 5363939 5364785 -13487028 - L1MD1 LINE L1 -1301 5239 4332 1417 73 10 5 chr4_random 5364785 5364977 -13486836 - L1PA3 LINE L1 0 6155 5963 3622 239 76 42 chr4_random 5364977 5365434 -13486379 - L1MD1 LINE L1 -2208 4332 3892 3985 163 56 80 chr4_random 5365487 5366402 -13485411 - MER21A LTR ERV1 -16 915 21 234 0 0 0 chr4_random 5366402 5366428 -13485385 + (TG)n Simple_repeat Simple_repeat 2 27 0 3985 163 56 80 chr4_random 5366428 5366441 -13485372 - MER21A LTR ERV1 -910 21 9 180 111 0 0 chr4_random 5366442 5366469 -13485344 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 808 202 95 0 chr4_random 5366483 5366726 -13485087 - L1MD1 LINE L1 -3155 3385 3120 789 145 7 14 chr4_random 5366725 5366863 -13484950 - L1MD1 LINE L1 -6281 259 123 * 288 77 0 0 chr4_random 5367470 5367509 -13484304 + (TA)n Simple_repeat Simple_repeat 2 40 0 511 289 69 20 chr4_random 5367774 5367978 -13483835 + MIR SINE MIR 49 262 0 25 31 0 0 chr4_random 5367986 5368018 -13483795 + AT_rich Low_complexity Low_complexity 1 32 0 2676 139 5 19 chr4_random 5370173 5370603 -13481210 + MSTC LTR MaLR 1 424 -4 2174 119 3 0 chr4_random 5370687 5370999 -13480814 + AluSp SINE Alu 1 313 0 356 304 226 10 chr4_random 5371006 5371506 -13480307 + L2 LINE L2 1671 2278 -1036 435 220 11 11 chr4_random 5371882 5371973 -13479840 - FRAM/FAM SINE Alu -86 90 1 2329 49 0 14 chr4_random 5372081 5372389 -13479424 - AluY SINE Alu 0 304 1 361 399 54 15 chr4_random 5372532 5372868 -13478945 + L2 LINE L2 2431 2779 -535 1125 311 91 9 chr4_random 5373072 5373525 -13478288 + L2 LINE L2 2488 2977 -337 2829 180 19 8 chr4_random 5373601 5374129 -13477684 - MER34 LTR ERV1 -6 536 3 496 268 105 10 chr4_random 5374212 5374421 -13477392 + L2 LINE L2 3021 3249 -64 198 167 0 0 chr4_random 5374432 5374468 -13477345 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 285 210 0 0 chr4_random 5374672 5374734 -13477079 + (TA)n Simple_repeat Simple_repeat 1 62 0 1615 218 99 9 chr4_random 5374933 5375359 -13476454 - MLT1C LTR MaLR 0 467 4 213 324 15 15 chr4_random 5375719 5375787 -13476026 - L2 LINE L2 -5 3267 3200 10853 124 14 1 chr4_random 5376156 5378641 -13473172 - L1PA8A LINE L1 -1 6130 3663 27 73 0 0 chr4_random 5379062 5379117 -13472696 + AT_rich Low_complexity Low_complexity 1 55 0 * 264 269 39 0 chr4_random 5379076 5379206 -13472607 + (TA)n Simple_repeat Simple_repeat 2 136 0 284 259 103 89 chr4_random 5379274 5379769 -13472044 - MER34 LTR ERV1 0 631 140 23 54 0 0 chr4_random 5381072 5381109 -13470704 + AT_rich Low_complexity Low_complexity 1 37 0 259 261 0 14 chr4_random 5381109 5381178 -13470635 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 239 325 34 34 chr4_random 5384599 5384716 -13467097 - MIR SINE MIR -72 190 74 997 259 155 30 chr4_random 5384911 5385421 -13466392 + MLT1E LTR MaLR 1 567 0 195 42 0 0 chr4_random 5386613 5386637 -13465176 + (CA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr4_random 5387208 5387237 -13464576 + AT_rich Low_complexity Low_complexity 1 29 0 2747 186 4 6 chr4_random 5387923 5388427 -13463386 + L1PA10 LINE L1 2 504 -5371 * 25080 149 13 22 chr4_random 5388422 5394176 -13457637 + L1PA10 LINE L1 766 6479 -4 1281 283 73 38 chr4_random 5394967 5395964 -13455849 + L1MCc LINE L1 1196 2354 -4587 21 0 0 0 chr4_random 5396001 5396022 -13455791 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr4_random 5396107 5396136 -13455677 + AT_rich Low_complexity Low_complexity 1 29 0 492 241 148 19 chr4_random 5396208 5396465 -13455348 + L1MCc LINE L1 2693 2982 -4140 923 63 0 0 chr4_random 5396478 5396589 -13455224 - AluSc SINE Alu -184 125 15 1341 101 11 0 chr4_random 5396589 5396767 -13455046 + AluSc SINE Alu 119 298 -11 1690 258 64 16 chr4_random 5396770 5397052 -13454761 + L1MCc LINE L1 2957 3224 -3717 2081 92 34 3 chr4_random 5397052 5397345 -13454468 + AluY SINE Alu 1 302 -9 1690 258 64 16 chr4_random 5397345 5397765 -13454048 + L1MCc LINE L1 3224 3693 -3248 24 32 0 0 chr4_random 5398950 5398981 -13452832 + AT_rich Low_complexity Low_complexity 1 31 0 410 297 58 7 chr4_random 5398997 5399135 -13452678 - MIR SINE MIR -29 233 89 1842 160 79 36 chr4_random 5399135 5399730 -13452083 - MER39 LTR ERV1 0 707 6 1545 277 58 20 chr4_random 5399888 5400390 -13451423 + MER74B LTR ERVL 84 604 -18 261 0 0 0 chr4_random 5400449 5400478 -13451335 + (CA)n Simple_repeat Simple_repeat 2 30 0 362 333 107 6 chr4_random 5401897 5402056 -13449757 + MIR SINE MIR 87 261 -1 2739 212 10 4 chr4_random 5402220 5402725 -13449088 - MLT2B1 LTR ERVL -12 508 1 325 313 106 26 chr4_random 5402925 5403190 -13448623 + L1ME4a LINE L1 5771 6056 -65 203 271 0 0 chr4_random 5403669 5403717 -13448096 - L2 LINE L2 -1 3312 3265 21 0 0 0 chr4_random 5403881 5403902 -13447911 + AT_rich Low_complexity Low_complexity 1 21 0 3360 167 20 5 chr4_random 5404097 5404690 -13447123 + MER7C DNA MER2_type 1 602 0 1321 154 35 0 chr4_random 5404771 5404998 -13446815 + MER46A DNA MER2_type 2 236 0 248 238 95 32 chr4_random 5405166 5405229 -13446584 - L2 LINE L2 0 3313 3247 629 161 73 40 chr4_random 5405702 5405826 -13445987 - FLAM_C SINE Alu -2 131 4 2083 108 31 0 chr4_random 5406380 5406668 -13445145 + AluSc SINE Alu 3 299 -10 2421 113 8 6 chr4_random 5407078 5407432 -13444381 - THE1A LTR MaLR 0 355 1 11262 92 15 22 chr4_random 5407432 5409023 -13442790 - THE1A-int LTR MaLR 0 1580 1 2033 137 17 25 chr4_random 5409023 5409381 -13442432 - THE1A LTR MaLR 0 355 1 1851 277 107 41 chr4_random 5409881 5410975 -13440838 + L2 LINE L2 2136 3312 -1 28 0 0 0 chr4_random 5412634 5412662 -13439151 + AT_rich Low_complexity Low_complexity 1 28 0 12067 88 6 6 chr4_random 5412849 5413804 -13438009 - L1PA7 LINE L1 -3 6151 5198 2517 173 38 10 chr4_random 5413804 5414283 -13437530 + LTR22B LTR ERVK 1 492 0 12067 88 6 6 chr4_random 5414283 5415824 -13435989 - L1PA7 LINE L1 -956 5198 3652 200 321 24 12 chr4_random 5416100 5416184 -13435629 - MIR SINE MIR -115 147 63 605 69 11 0 chr4_random 5416454 5416541 -13435272 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 23 86 0 0 chr4_random 5417008 5417066 -13434747 + AT_rich Low_complexity Low_complexity 1 58 0 409 317 74 30 chr4_random 5417310 5417512 -13434301 - MIR SINE MIR -41 221 11 1980 218 70 44 chr4_random 5417611 5418185 -13433628 + MLT1E LTR MaLR 3 591 -2 2296 225 18 64 chr4_random 5418810 5419464 -13432349 - MLT1E2 LTR MaLR 0 626 3 3654 199 27 50 chr4_random 5419790 5420587 -13431226 - L1MB4 LINE L1 -13 6167 5405 1764 199 19 17 chr4_random 5420587 5420949 -13430864 + MLT1A1 LTR MaLR 3 365 0 3654 199 27 50 chr4_random 5420949 5421359 -13430454 - L1MB4 LINE L1 -775 5405 4987 699 256 63 153 chr4_random 5421694 5422412 -13429401 + MER77 LTR ERV1 7 601 -4 2412 115 5 35 chr4_random 5422412 5422787 -13429026 + THE1B LTR MaLR 1 364 0 32 67 0 0 chr4_random 5423664 5423724 -13428089 + AT_rich Low_complexity Low_complexity 1 60 0 2056 148 77 0 chr4_random 5423972 5424310 -13427503 - THE1B LTR MaLR 0 364 1 219 300 64 79 chr4_random 5424426 5424566 -13427247 - L2 LINE L2 -613 2701 2564 1761 199 32 3 chr4_random 5424692 5425039 -13426774 + MLT1A1 LTR MaLR 2 358 -7 353 346 53 57 chr4_random 5425061 5425532 -13426281 - L2 LINE L2 -955 2359 1891 29 28 0 0 chr4_random 5426290 5426326 -13425487 + AT_rich Low_complexity Low_complexity 1 36 0 586 208 25 8 chr4_random 5426341 5426461 -13425352 - FLAM_A SINE Alu -11 122 1 948 197 84 0 chr4_random 5626633 5626836 -13224977 - MLT2B1 LTR ERVL -300 220 1 5771 191 17 56 chr4_random 5626867 5629318 -13222495 + L1PB1 LINE L1 3811 6149 -2 2119 238 66 48 chr4_random 5629372 5629621 -13222192 - HERVL74 LTR ERVL -3898 1787 1544 1662 166 39 39 chr4_random 5629621 5629928 -13221885 + AluJo SINE Alu 1 307 -5 2119 238 66 48 chr4_random 5629928 5630388 -13221425 - HERVL74 LTR ERVL -4141 1544 1065 1061 127 4 9 chr4_random 5630416 5630768 -13221045 + (TTCC)n Simple_repeat Simple_repeat 1 530 0 595 209 108 6 chr4_random 5630790 5630948 -13220865 - HERVL74 LTR ERVL -2590 966 793 272 261 92 0 chr4_random 5631029 5631094 -13220719 + tRNA-Met-i tRNA tRNA 3 73 -2 1275 161 74 0 chr4_random 5631153 5631370 -13220443 + HUERS-P1 LTR ERV1 6348 6580 -957 1753 70 27 4 chr4_random 5631372 5631629 -13220184 + HUERS-P1 LTR ERV1 4560 4822 -1441 338 214 2 0 chr4_random 5631629 5631707 -13220106 + MSTB LTR MaLR 29 107 -319 276 197 49 0 chr4_random 5631708 5631769 -13220044 + MSTB LTR MaLR 46 109 -317 1227 185 130 4 chr4_random 5631771 5632047 -13219766 + MSTA LTR MaLR 47 357 -71 4812 94 13 13 chr4_random 5632071 5632763 -13219050 - L1PA10 LINE L1 -1 6167 5476 * 19350 42 4 3 chr4_random 5632758 5635958 -13215855 - L1PA4 LINE L1 -3 6152 2951 2052 133 0 0 chr4_random 5635959 5636252 -13215561 - AluSx SINE Alu -19 293 1 878 113 20 7 chr4_random 5638333 5638484 -13213329 + MER53 DNA DNA 36 188 -1 1107 180 66 80 chr4_random 5638579 5638868 -13212945 - AluJo SINE Alu -16 286 2 451 139 0 13 chr4_random 5638882 5638961 -13212852 - MADE1 DNA Mariner -2 78 1 703 190 0 0 chr4_random 5638963 5639084 -13212729 - FLAM_C SINE Alu -17 126 6 203 171 53 53 chr4_random 5639174 5639250 -13212563 + A-rich Low_complexity Low_complexity 5 80 0 606 230 116 55 chr4_random 5639256 5639617 -13212196 + L1ME LINE L1 606 988 -5082 445 324 47 7 chr4_random 5639683 5639831 -13211982 + L3 LINE CR1 377 530 -1047 419 302 39 34 chr4_random 5640197 5640376 -13211437 + MER5A DNA MER1_type 1 180 -9 234 217 188 0 chr4_random 5640495 5640564 -13211249 - MER20 DNA MER1_type -82 137 56 1991 127 0 0 chr4_random 5643072 5643347 -13208466 + AluSx SINE Alu 1 275 -37 1007 161 12 0 chr4_random 5643701 5643862 -13207951 - FRAM SINE Alu -18 158 1 22 80 0 0 chr4_random 5645098 5645148 -13206665 + AT_rich Low_complexity Low_complexity 1 50 0 277 191 0 0 chr4_random 5646384 5646431 -13205382 + tRNA-Arg-CGC tRNA tRNA 2 48 -28 24 0 0 0 chr4_random 5646476 5646500 -13205313 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr4_random 5646548 5646572 -13205241 + AT_rich Low_complexity Low_complexity 1 24 0 781 274 35 4 chr4_random 5646659 5646885 -13204928 + L1MC4a LINE L1 5597 5829 -1979 241 254 0 0 chr4_random 5648779 5648834 -13202979 - MER112 DNA MER1_type -25 235 181 550 219 58 13 chr4_random 5648883 5649038 -13202775 - MER112 DNA MER1_type -98 162 1 21 0 0 0 chr4_random 5649509 5649530 -13202283 + AT_rich Low_complexity Low_complexity 1 21 0 253 204 0 184 chr4_random 5650136 5650194 -13201619 - MER33 DNA MER1_type -2505 80 45 1657 186 7 14 chr4_random 5650194 5650485 -13201328 + AluJo SINE Alu 9 297 -15 253 204 0 184 chr4_random 5650485 5650524 -13201289 - MER33 DNA MER1_type -2540 45 1 24 0 0 0 chr4_random 5651464 5651488 -13200325 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4_random 5651659 5651697 -13200116 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr4_random 5652696 5652732 -13199081 + AT_rich Low_complexity Low_complexity 1 36 0 800 236 149 0 chr4_random 5652784 5652992 -13198821 - L1MD2 LINE L1 -46 6313 6075 953 205 6 0 chr4_random 5653023 5653194 -13198619 + FRAM SINE Alu 1 171 -5 2147 110 7 10 chr4_random 5653342 5653643 -13198170 - AluSg SINE Alu -10 300 1 244 299 39 45 chr4_random 5653987 5654141 -13197672 + L1MC5 LINE L1 7733 7885 -76 1826 217 52 28 chr4_random 5654277 5654884 -13196929 + L1MB3 LINE L1 4945 5555 -747 331 181 0 24 chr4_random 5654884 5654967 -13196846 + L1MB3 LINE L1 6090 6170 -13 1826 217 52 28 chr4_random 5654967 5655028 -13196785 + L1MB3 LINE L1 5555 5613 -689 26 30 0 0 chr4_random 5655229 5655262 -13196551 + AT_rich Low_complexity Low_complexity 1 33 0 1627 176 7 10 chr4_random 5655865 5656160 -13195653 + AluJo SINE Alu 18 311 -1 334 324 105 40 chr4_random 5656762 5657086 -13194727 + L1ME LINE L1 36 380 -6016 3225 256 92 37 chr4_random 5657430 5657706 -13194107 + L1ME LINE L1 2435 2694 -3521 1978 126 3 23 chr4_random 5657706 5658016 -13193797 + AluSq SINE Alu 3 306 -7 3225 256 92 37 chr4_random 5658016 5658440 -13193373 + L1ME LINE L1 2694 3093 -3122 1293 128 90 0 chr4_random 5658440 5658651 -13193162 - MER30 DNA MER1_type 0 230 1 3225 256 92 37 chr4_random 5658651 5659906 -13191907 + L1ME LINE L1 3093 4543 -1672 253 255 43 21 chr4_random 5659913 5660007 -13191806 + L1ME LINE L1 4614 4709 -1506 1162 261 67 35 chr4_random 5660014 5660460 -13191353 + L1ME LINE L1 4768 5233 -982 1611 102 0 53 chr4_random 5660460 5660704 -13191109 + AluY SINE Alu 81 311 0 1162 261 67 35 chr4_random 5660704 5660767 -13191046 + L1ME LINE L1 5233 5293 -922 839 176 34 17 chr4_random 5660763 5660939 -13190874 + L1ME LINE L1 5546 5724 -509 * 197 139 23 0 chr4_random 5661651 5661694 -13190119 + CT-rich Low_complexity Low_complexity 2 45 0 537 282 47 7 chr4_random 5661889 5662038 -13189775 + MIR SINE MIR 17 171 -91 2891 165 77 19 chr4_random 5662039 5662674 -13189139 + L1MB7 LINE L1 5497 6168 -16 239 244 23 47 chr4_random 5662689 5662775 -13189038 + MIR SINE MIR 179 262 0 262 357 40 32 chr4_random 5663291 5663417 -13188396 - MIR SINE MIR -130 132 6 316 266 109 16 chr4_random 5665268 5665396 -13186417 + MIR SINE MIR 119 258 -4 314 315 34 20 chr4_random 5666221 5666367 -13185446 - MER5A DNA MER1_type -6 183 36 301 289 42 49 chr4_random 5666243 5666385 -13185428 + MER5A DNA MER1_type 43 183 -6 * 4070 204 9 51 chr4_random 5667133 5667561 -13184252 + L1PA16 LINE L1 5393 5838 -328 2017 180 62 10 chr4_random 5667561 5667966 -13183847 - MSTA LTR MaLR -2 426 1 4070 204 9 51 chr4_random 5667966 5668225 -13183588 + L1PA16 LINE L1 5838 6044 -122 1843 160 133 13 chr4_random 5668225 5668607 -13183206 - MSTA LTR MaLR 0 428 1 4070 204 9 51 chr4_random 5668607 5668717 -13183096 + L1PA16 LINE L1 6044 6157 -9 205 125 0 50 chr4_random 5668727 5668767 -13183046 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 180 0 0 0 chr4_random 5669424 5669444 -13182369 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 829 158 195 0 chr4_random 5669893 5670057 -13181756 + MER58A DNA MER1_type 16 211 -13 1732 119 0 4 chr4_random 5670344 5670618 -13181195 + AluY SINE Alu 39 311 0 424 322 9 9 chr4_random 5671146 5671261 -13180552 - MER5A DNA MER1_type -15 174 60 1208 185 54 47 chr4_random 5671265 5671671 -13180142 - LTR37A LTR ERV1 0 426 18 328 175 16 0 chr4_random 5672208 5672271 -13179542 - L1MA6 LINE L1 -14 7246 7183 1008 183 41 5 chr4_random 5672276 5672473 -13179340 - L1MA6 LINE L1 -293 6967 6764 774 195 81 26 chr4_random 5672480 5672770 -13179043 + MSTA LTR MaLR 1 428 0 12944 227 37 15 chr4_random 5672770 5674998 -13176815 - L1MA6 LINE L1 -510 6750 4572 1466 210 38 3 chr4_random 5674998 5675288 -13176525 - AluJo SINE Alu -5 307 8 12944 227 37 15 chr4_random 5675288 5678741 -13173072 - L1MA6 LINE L1 -2688 4572 926 416 248 0 19 chr4_random 5678779 5678884 -13172929 - L1MA6 LINE L1 -6921 109 7 289 262 75 28 chr4_random 5679030 5679137 -13172676 + MIR SINE MIR 80 191 -71 906 217 72 47 chr4_random 5679486 5679831 -13171982 - MER67C LTR ERV1 -3 511 173 303 259 18 62 chr4_random 5679832 5679944 -13171869 - MLT1I LTR MaLR -240 169 63 233 53 158 0 chr4_random 5680060 5680098 -13171715 - L1M2 LINE L1 -540 5751 5708 312 328 16 25 chr4_random 5680391 5680513 -13171300 + MIR SINE MIR 24 144 -118 180 314 108 0 chr4_random 5680682 5680784 -13171029 - MIR SINE MIR -70 192 80 638 221 8 0 chr4_random 5682124 5682251 -13169562 - FLAM_C SINE Alu -5 128 1 294 296 43 26 chr4_random 5682681 5682796 -13169017 + MIR SINE MIR 36 152 -56 234 324 67 0 chr4_random 5683030 5683135 -13168678 - MIR SINE MIR -71 191 80 210 116 47 0 chr4_random 5683622 5683665 -13168148 + (TA)n Simple_repeat Simple_repeat 2 46 0 1584 199 76 34 chr4_random 5683894 5684367 -13167446 - MLT1D LTR MaLR -3 502 10 978 211 50 107 chr4_random 5684699 5685082 -13166731 - MLT1A1 LTR MaLR -4 361 1 259 300 0 11 chr4_random 5685637 5685727 -13166086 + LTR67 LTR ERVL 434 522 -35 645 316 72 31 chr4_random 5686573 5686988 -13164825 - MLT1K LTR MaLR -10 578 147 625 275 63 26 chr4_random 5686990 5687179 -13164634 - MER91A DNA MER1_type 0 196 1 7045 239 85 31 chr4_random 5687768 5690109 -13161704 + L1MA9 LINE L1 2187 4400 -2148 323 188 16 0 chr4_random 5690109 5690173 -13161640 - MER2 DNA MER2_type 0 345 281 7045 239 85 31 chr4_random 5690173 5691208 -13160605 + L1MA9 LINE L1 4400 5377 -1171 1664 178 42 0 chr4_random 5691208 5691495 -13160318 + AluJo SINE Alu 1 299 -13 7045 239 85 31 chr4_random 5691495 5692175 -13159638 + L1MA9 LINE L1 5377 6548 0 1276 195 96 1 chr4_random 5692347 5692809 -13159004 - Charlie1b DNA MER1_type 0 523 22 936 200 40 77 chr4_random 5693218 5693518 -13158295 - AluJo SINE Alu -17 295 7 1694 176 7 3 chr4_random 5693586 5693875 -13157938 - AluJb SINE Alu -22 290 1 31 30 0 0 chr4_random 5694139 5694172 -13157641 + AT_rich Low_complexity Low_complexity 1 33 0 1040 229 106 37 chr4_random 5695283 5695633 -13156180 - MLT1A2 LTR MaLR 0 374 1 309 262 135 48 chr4_random 5695934 5696163 -13155650 - MIR SINE MIR -13 249 1 224 192 208 58 chr4_random 5697460 5697580 -13154233 - MIR SINE MIR -72 190 53 284 219 0 0 chr4_random 5699391 5699455 -13152358 + L1MB4 LINE L1 5637 5700 -480 367 235 0 0 chr4_random 5699475 5699556 -13152257 - 7SLRNA srpRNA srpRNA -10 310 230 1195 242 8 0 chr4_random 5699778 5700034 -13151779 - 7SLRNA srpRNA srpRNA -60 260 3 1854 181 34 10 chr4_random 5700061 5700470 -13151343 + L1MB4 LINE L1 5699 6117 -63 10449 168 20 15 chr4_random 5701373 5701555 -13150258 - Ricksha DNA DNA -15 3231 3052 2090 131 0 0 chr4_random 5701555 5701853 -13149960 + AluY SINE Alu 1 298 -13 10449 168 20 15 chr4_random 5701853 5703762 -13148051 - Ricksha DNA DNA -194 3052 1189 1563 163 3 0 chr4_random 5703764 5704046 -13147767 - Ricksha DNA DNA -2745 501 219 713 165 0 0 chr4_random 5704092 5704201 -13147612 + FLAM_C SINE Alu 3 111 -32 2535 102 21 19 chr4_random 5704202 5704576 -13147237 + THE1C LTR MaLR 1 375 0 8085 140 101 6 chr4_random 5704576 5706018 -13145795 + THE1C-int LTR MaLR 1 1580 0 1980 121 91 6 chr4_random 5706018 5706357 -13145456 + THE1C LTR MaLR 1 368 -7 511 167 0 0 chr4_random 5706385 5706475 -13145338 - Ricksha DNA DNA -1158 96 7 291 179 0 18 chr4_random 5707048 5707104 -13144709 - MER63 DNA MER1_type -330 730 676 348 295 72 61 chr4_random 5707206 5707457 -13144356 + L2 LINE L2 2764 3048 -265 263 246 0 0 chr4_random 5707460 5707525 -13144288 - MLT1E2 LTR MaLR 0 626 562 879 201 83 30 chr4_random 5707529 5707793 -13144020 - MLT1D LTR MaLR -158 347 70 551 300 22 50 chr4_random 5707832 5708109 -13143704 + L2 LINE L2 3045 3313 0 606 258 0 0 chr4_random 5708321 5708445 -13143368 - FLAM_C SINE Alu -19 124 1 2858 3 0 3 chr4_random 5708795 5709107 -13142706 + AluYa5 SINE Alu 1 311 0 1087 161 4 3 chr4_random 5709422 5716665 -13135148 - ALR/Alpha Satellite centromeric 0 9026 1403 3030 41 0 0 chr4_random 5716665 5717031 -13134782 + L1PA3 LINE L1 5785 6150 -5 1087 161 4 3 chr4_random 5717031 5718436 -13133377 - ALR/Alpha Satellite centromeric -7623 1403 1 2115 119 0 3 chr4_random 5718643 5718955 -13132858 + AluYa5 SINE Alu 1 311 0 198 71 0 0 chr4_random 5720335 5720363 -13131450 + (TC)n Simple_repeat Simple_repeat 1 28 0 192 40 0 0 chr4_random 5720363 5720388 -13131425 + (TG)n Simple_repeat Simple_repeat 2 26 0 268 299 103 17 chr4_random 5721709 5721826 -13129987 + MARNA DNA Mariner 94 220 -366 373 309 121 12 chr4_random 5721869 5722034 -13129779 + MIR SINE MIR 23 205 -57 205 196 0 22 chr4_random 5722710 5722756 -13129057 + (TTCA)n Simple_repeat Simple_repeat 3 47 0 215 372 20 20 chr4_random 5724687 5724835 -13126978 + L2 LINE L2 2694 2841 -473 4786 32 0 0 chr4_random 5725311 5725906 -13125907 + L1P LINE L1 4437 5031 -1115 1555 275 143 41 chr4_random 5726143 5726676 -13125137 + L2 LINE L2 2141 2781 -532 1617 147 4 0 chr4_random 5726676 5726921 -13124892 - AluSx SINE Alu -9 303 58 1555 275 143 41 chr4_random 5726921 5727172 -13124641 + L2 LINE L2 2781 3005 -308 181 54 0 54 chr4_random 5727172 5727209 -13124604 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 15037 52 17 7 chr4_random 5727209 5730118 -13121695 - L1PA4 LINE L1 -24 6131 3199 14775 78 21 0 chr4_random 5730116 5732059 -13119754 - L1PA4 LINE L1 -4163 1983 1 * 369 271 14 14 chr4_random 5732068 5732208 -13119605 - L1M3 LINE L1 -364 5816 5677 1308 184 5 5 chr4_random 5732277 5732500 -13119313 + AluSx SINE Alu 3 225 -87 1192 206 56 137 chr4_random 5732505 5733244 -13118569 - L1M3 LINE L1 -508 5672 5016 * 7067 206 70 14 chr4_random 5733240 5734694 -13117119 - L1PA16 LINE L1 -6 6160 4532 1933 137 7 0 chr4_random 5734694 5734979 -13116834 - AluSc SINE Alu -22 287 1 7067 206 70 14 chr4_random 5734979 5735865 -13115948 - L1PA16 LINE L1 -1634 4532 3697 1242 131 0 0 chr4_random 5735866 5736057 -13115756 - AluY SINE Alu 0 311 121 1463 202 12 27 chr4_random 5736057 5736393 -13115420 - L1PA16 LINE L1 -2463 3683 3353 1308 277 40 29 chr4_random 5736447 5737147 -13114666 - L1M3 LINE L1 -1131 5015 4308 1339 152 5 0 chr4_random 5737366 5737570 -13114243 + AluSq SINE Alu 1 205 -108 1028 319 38 31 chr4_random 5737744 5738192 -13113621 + LTR40a LTR ERVL 65 515 -4 1169 161 5 1 chr4_random 5738500 5750711 -13101102 - ALR/Alpha Satellite centromeric -1 12260 1 1104 170 2 0 chr4_random 5750723 5757471 -13094342 - ALR/Alpha Satellite centromeric 0 6762 1 1110 164 16 0 chr4_random 5757582 5760245 -13091568 - ALR/Alpha Satellite centromeric 0 2705 1 858 0 10 0 chr4_random 5760245 5760344 -13091469 - L1PA3 LINE L1 -302 5853 5754 432 227 23 23 chr4_random 5760344 5760472 -13091341 + ALR/Alpha Satellite centromeric 45 172 0 * 1174 164 4 4 chr4_random 5760377 5763342 -13088471 + ALR/Alpha Satellite centromeric 1 2965 -3723 6916 53 0 0 chr4_random 5763342 5764202 -13087611 + L1PA3 LINE L1 5293 6152 -3 1174 164 4 4 chr4_random 5764202 5767007 -13084806 + ALR/Alpha Satellite centromeric 2965 6627 -61 794 175 7 0 chr4_random 5767023 5767224 -13084589 + ALR/Alpha Satellite centromeric 1 202 -10 1094 179 3 5 chr4_random 5767334 5768199 -13083614 + ALR/Alpha Satellite centromeric 1 866 -1422 2720 10 0 0 chr4_random 5768199 5768493 -13083320 - AluYa5 SINE Alu -8 303 10 1094 179 3 5 chr4_random 5768493 5769566 -13082247 + ALR/Alpha Satellite centromeric 866 2227 -61 1214 169 7 2 chr4_random 5769666 5780465 -13071348 + ALR/Alpha Satellite centromeric 1 10856 -39 988 171 12 1 chr4_random 5780565 5782259 -13069554 - ALR/Alpha Satellite centromeric 0 1711 1 7856 51 1 0 chr4_random 5782259 5783312 -13068501 - L1P LINE L1 -2162 3984 2931 3791 58 8 0 chr4_random 5783312 5783792 -13068021 + L1PA3 LINE L1 5665 6151 -4 921 178 4 3 chr4_random 5783796 5785982 -13065831 - ALR/Alpha Satellite centromeric -1 2189 1 1038 171 5 2 chr4_random 5786087 5797021 -13054792 - ALR/Alpha Satellite centromeric 0 10962 1 5965 84 35 9 chr4_random 5797021 5798123 -13053690 + L1PA4 LINE L1 5028 6152 -3 987 171 1 0 chr4_random 5798164 5798935 -13052878 - ALR/Alpha Satellite centromeric 0 772 1 1089 128 0 0 chr4_random 5798962 5799052 -13052761 + (GAGTG)n Simple_repeat Simple_repeat 1 270 0 1089 128 0 0 chr4_random 5799052 5799232 -13052581 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 942 144 0 0 chr4_random 5799297 5799477 -13052336 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 1155 102 0 0 chr4_random 5799572 5799657 -13052156 + (GAATG)n Satellite Satellite 1 262 0 1155 102 0 0 chr4_random 5799657 5799834 -13051979 + (GAATG)n Satellite Satellite 4 180 0 884 151 6 0 chr4_random 5799887 5800066 -13051747 + (GAATG)n Satellite Satellite 1 180 0 1083 98 0 0 chr4_random 5800109 5800272 -13051541 + (GAATG)n Satellite Satellite 5 167 0 375 172 16 0 chr4_random 5800283 5800347 -13051466 + AluS SINE Alu 224 288 -13 1017 137 0 0 chr4_random 5800348 5800669 -13051144 + (GAATG)n Satellite Satellite 1 321 0 305 200 0 0 chr4_random 5800680 5800735 -13051078 + AluJ/FRAM SINE Alu 225 279 -23 939 177 0 0 chr4_random 5800775 5801448 -13050365 + (GAATG)n Satellite Satellite 1 849 0 957 150 0 0 chr4_random 5801451 5801615 -13050198 + (GAATG)n Satellite Satellite 1 344 0 957 150 0 0 chr4_random 5801615 5801795 -13050018 + (GAATG)n Satellite Satellite 1 180 0 987 147 0 0 chr4_random 5801850 5802027 -13049786 + (GAATG)n Satellite Satellite 4 180 0 457 144 0 10 chr4_random 5802038 5802135 -13049678 + (GAATG)n Satellite Satellite 2 97 0 342 67 0 0 chr4_random 5802235 5802280 -13049533 + (GAATG)n Satellite Satellite 4 48 0 930 215 0 0 chr4_random 5802302 5802653 -13049160 + (GAATG)n Satellite Satellite 1 351 0 239 240 0 0 chr4_random 5802665 5802720 -13049093 + Alu SINE Alu 224 270 -31 1125 118 0 0 chr4_random 5802730 5802908 -13048905 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 339 239 0 0 chr4_random 5802909 5802997 -13048816 + (CGGAA)n Simple_repeat Simple_repeat 2 89 0 796 146 0 27 chr4_random 5803040 5803225 -13048588 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 906 157 0 0 chr4_random 5803250 5803428 -13048385 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 528 197 0 0 chr4_random 5803419 5803630 -13048183 + (GAGTG)n Simple_repeat Simple_repeat 1 211 0 * 894 157 0 0 chr4_random 5803630 5803808 -13048005 + (GAATG)n Simple_repeat Simple_repeat 3 180 0 1073 132 4 0 chr4_random 5803810 5804048 -13047765 + (GAGTG)n Simple_repeat Simple_repeat 1 239 0 912 180 0 0 chr4_random 5804174 5804440 -13047373 + (GAATG)n Satellite Satellite 1 266 0 337 179 30 0 chr4_random 5804453 5804520 -13047293 + AluJ/FRAM SINE Alu 226 294 -8 1059 147 2 2 chr4_random 5804520 5805040 -13046773 + (GAATG)n Satellite Satellite 1 520 0 1019 123 6 0 chr4_random 5805051 5805222 -13046591 + (GAATG)n Satellite Satellite 5 176 0 307 185 31 0 chr4_random 5805232 5805297 -13046516 + AluS SINE Alu 223 289 -12 762 178 10 0 chr4_random 5805303 5805614 -13046199 + (GAATG)n Satellite Satellite 1 314 0 348 172 31 0 chr4_random 5805614 5805678 -13046135 + AluJ/FRAM SINE Alu 225 290 -12 516 158 0 0 chr4_random 5805679 5805774 -13046039 + (GAATG)n Simple_repeat Simple_repeat 1 95 0 1108 172 3 0 chr4_random 5805780 5816226 -13035587 + ALR/Alpha Satellite centromeric 1 10478 0 1643 179 3 0 chr4_random 5866232 5866523 -12985290 + AluSx SINE Alu 20 311 -1 314 214 24 0 chr4_random 5866536 5866620 -12985193 - L1M4 LINE L1 -411 5773 5688 1941 151 3 0 chr4_random 5867013 5867311 -12984502 - AluSq SINE Alu -11 302 4 363 170 330 0 chr4_random 5867698 5867798 -12984015 - MER20 DNA MER1_type -81 138 6 2036 134 0 0 chr4_random 5870347 5870645 -12981168 + AluSx SINE Alu 1 298 -14 1094 126 13 0 chr4_random 5870979 5871138 -12980675 - FRAM SINE Alu -18 158 1 22 80 0 0 chr4_random 5872376 5872426 -12979387 + AT_rich Low_complexity Low_complexity 1 50 0 279 191 0 0 chr4_random 5873365 5873412 -12978401 + tRNA-Arg-CGC tRNA tRNA 2 48 -28 24 0 0 0 chr4_random 5873530 5873554 -12978259 + AT_rich Low_complexity Low_complexity 1 24 0 854 248 58 78 chr4_random 5873641 5874036 -12977777 + L1MC4a LINE L1 5597 5983 -1825 227 262 9 47 chr4_random 5874725 5874832 -12976981 - L1ME4a LINE L1 -40 6081 5979 21 0 0 0 chr4_random 5875226 5875247 -12976566 + AT_rich Low_complexity Low_complexity 1 21 0 229 273 0 0 chr4_random 5875717 5875772 -12976041 - MER112 DNA MER1_type -25 235 181 635 200 58 13 chr4_random 5875821 5875976 -12975837 - MER112 DNA MER1_type -98 162 1 22 0 0 0 chr4_random 5876443 5876465 -12975348 + AT_rich Low_complexity Low_complexity 1 22 0 243 186 0 186 chr4_random 5877082 5877128 -12974685 - Charlie5 DNA MER1_type -254 70 46 1672 176 7 13 chr4_random 5877128 5877429 -12974384 + AluJo SINE Alu 9 307 -5 243 186 0 186 chr4_random 5877429 5877468 -12974345 - Charlie5 DNA MER1_type -278 46 1 24 53 0 0 chr4_random 5878713 5878751 -12973062 + AT_rich Low_complexity Low_complexity 1 38 0 940 210 155 0 chr4_random 5879821 5880048 -12971765 - L1MD3 LINE L1 -2 7993 6075 942 204 6 0 chr4_random 5880080 5880252 -12971561 + FRAM SINE Alu 1 172 -4 2199 107 3 26 chr4_random 5880401 5880709 -12971104 - AluSg SINE Alu -9 301 1 308 306 29 40 chr4_random 5881032 5881205 -12970608 + L1MC5 LINE L1 7712 7882 -79 1909 170 49 36 chr4_random 5881386 5881998 -12969815 + L1M3 LINE L1 4945 5556 -624 435 152 0 13 chr4_random 5881998 5882077 -12969736 + L1MB4 LINE L1 6092 6169 -11 21 71 0 0 chr4_random 5882268 5882310 -12969503 + AT_rich Low_complexity Low_complexity 1 42 0 33 0 0 0 chr4_random 5882341 5882374 -12969439 + AT_rich Low_complexity Low_complexity 1 33 0 565 256 6 6 chr4_random 5882556 5882728 -12969085 + L1M4 LINE L1 3574 3745 -2401 908 165 34 17 chr4_random 5882795 5882971 -12968842 + L1ME LINE L1 5477 5655 -509 240 157 39 0 chr4_random 5883682 5883733 -12968080 + CT-rich Low_complexity Low_complexity 2 54 0 477 254 18 9 chr4_random 5883928 5884042 -12967771 + MIR SINE MIR 17 131 -131 2868 175 74 27 chr4_random 5884044 5884708 -12967105 + L1MB7 LINE L1 5474 6168 -16 213 256 23 47 chr4_random 5884723 5884809 -12967004 + MIR SINE MIR 179 262 0 252 284 110 16 chr4_random 5887302 5887429 -12964384 + MIR SINE MIR 120 258 -4 329 331 30 36 chr4_random 5888254 5888420 -12963393 - MER5A DNA MER1_type -6 183 19 3620 137 8 20 chr4_random 5889168 5889571 -12962242 + L1PA16 LINE L1 5393 5788 -378 2283 168 62 12 chr4_random 5889571 5889977 -12961836 - MSTA LTR MaLR -2 426 1 3620 137 8 20 chr4_random 5889977 5890171 -12961642 + L1PA16 LINE L1 5788 5983 -183 34264 61 4 3 chr4_random 5890276 5894615 -12957198 - L1P LINE L1 -1798 4348 4 292 282 99 43 chr4_random 5894734 5894935 -12956878 - L1MEc LINE L1 -4921 1475 1248 186 43 0 0 chr4_random 5894935 5894958 -12956855 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 292 282 99 43 chr4_random 5894958 5895079 -12956734 - L1MEc LINE L1 -5148 1248 1135 22 0 0 0 chr4_random 5895138 5895160 -12956653 + AT_rich Low_complexity Low_complexity 1 22 0 2230 126 0 0 chr4_random 5896720 5897030 -12954783 - AluSx SINE Alu -2 310 1 192 276 37 134 chr4_random 5897402 5897536 -12954277 - L2 LINE L2 0 3272 3152 21 36 0 0 chr4_random 5898182 5898210 -12953603 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4_random 5898262 5898285 -12953528 + AT_rich Low_complexity Low_complexity 1 23 0 901 130 19 7 chr4_random 5899108 5899262 -12952551 + MER53 DNA DNA 33 188 -1 1253 187 64 57 chr4_random 5899357 5899640 -12952173 - AluJo SINE Alu -16 286 2 568 101 0 13 chr4_random 5899652 5899731 -12952082 - MADE1 DNA Mariner -2 78 1 788 183 0 29 chr4_random 5899731 5899859 -12951954 - FLAM_C SINE Alu -186 126 1 625 225 82 56 chr4_random 5900025 5900382 -12951431 + L1ME LINE L1 622 988 -5082 463 309 40 7 chr4_random 5900448 5900597 -12951216 + L3 LINE CR1 377 530 -1047 226 234 21 0 chr4_random 5900995 5901042 -12950771 - MER5A DNA MER1_type -22 167 120 982 171 26 87 chr4_random 5901155 5901419 -12950394 - AluJo SINE Alu -58 254 7 1555 177 14 10 chr4_random 5901487 5901775 -12950038 - AluJb SINE Alu -23 289 1 33 0 0 0 chr4_random 5902045 5902078 -12949735 + AT_rich Low_complexity Low_complexity 1 33 0 1191 229 100 31 chr4_random 5903151 5903501 -12948312 - MLT1A2 LTR MaLR 0 374 1 260 286 87 29 chr4_random 5903802 5904030 -12947783 - MIR SINE MIR -13 249 1 2184 151 81 8 chr4_random 5904932 5905316 -12946497 - Tigger1 DNA MER2_type -941 1477 1066 1435 206 3 36 chr4_random 5905318 5905624 -12946189 - AluJb SINE Alu -16 296 1 881 173 0 0 chr4_random 5906083 5906216 -12945597 + FLAM_C SINE Alu 1 133 0 182 120 260 0 chr4_random 5906263 5906313 -12945500 - MIR3 SINE MIR -17 191 129 1846 154 3 3 chr4_random 5906434 5906720 -12945093 + AluSq SINE Alu 3 288 -25 2079 117 0 0 chr4_random 5906962 5907264 -12944549 + AluSq SINE Alu 1 302 0 21 36 0 0 chr4_random 5907441 5907469 -12944344 + AT_rich Low_complexity Low_complexity 1 28 0 1606 160 0 45 chr4_random 5908230 5908518 -12943295 + AluJo SINE Alu 1 275 -37 216 86 0 0 chr4_random 5908518 5908553 -12943260 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 * 617 73 37 0 chr4_random 5908552 5908661 -12943152 + (TA)n Simple_repeat Simple_repeat 1 113 0 802 265 114 45 chr4_random 5908661 5909140 -12942673 + L1M2 LINE L1 4655 5100 -1147 1612 140 105 14 chr4_random 5909140 5909425 -12942388 + AluSx SINE Alu 1 311 -1 802 265 114 45 chr4_random 5909425 5909711 -12942102 + L1M2 LINE L1 5100 5365 -882 2411 136 0 22 chr4_random 5909711 5910072 -12941741 - THE1A LTR MaLR -2 353 1 11780 117 3 1 chr4_random 5910072 5911649 -12940164 - THE1A-int LTR MaLR 0 1580 1 2592 105 3 43 chr4_random 5911649 5912019 -12939794 - THE1A LTR MaLR 0 355 1 802 265 114 45 chr4_random 5912019 5912373 -12939440 + L1M2 LINE L1 5364 5853 -394 1312 185 63 110 chr4_random 5912714 5913097 -12938716 + MLT1A1 LTR MaLR 1 365 0 253 222 16 0 chr4_random 5913313 5913376 -12938437 + CT-rich Low_complexity Low_complexity 1 64 0 216 163 0 0 chr4_random 5913380 5913423 -12938390 + (TG)n Simple_repeat Simple_repeat 2 44 0 2093 276 40 48 chr4_random 5914123 5915161 -12936652 + SST1 Satellite centromeric 1 1029 -534 758 222 34 26 chr4_random 5917705 5917924 -12933889 + MIR SINE MIR 37 259 -3 1088 227 36 8 chr4_random 5917926 5918177 -12933636 + MIR SINE MIR 5 262 0 270 323 12 1 chr4_random 5918605 5918698 -12933115 - MIR SINE MIR -76 132 40 406 218 186 26 chr4_random 5919029 5919185 -12932628 - MIR SINE MIR -12 250 70 3667 135 15 129 chr4_random 5919819 5920304 -12931509 - Tigger1 DNA MER2_type -697 1721 1363 2066 126 19 7 chr4_random 5920304 5920613 -12931200 - AluSq SINE Alu 0 313 1 3667 135 15 129 chr4_random 5920613 5920935 -12930878 - Tigger1 DNA MER2_type -1055 1363 1006 576 175 19 0 chr4_random 5920930 5921033 -12930780 - Tigger1 DNA MER2_type -1908 510 406 * 226 261 0 14 chr4_random 5921169 5921238 -12930575 + (CCCGG)n Simple_repeat Simple_repeat 5 72 0 325 278 45 7 chr4_random 5921990 5922271 -12929542 - LSAU Satellite Satellite -139 291 1 647 177 0 23 chr4_random 5922332 5922507 -12929306 + GA-rich Low_complexity Low_complexity 2 172 0 237 195 0 0 chr4_random 5922927 5922968 -12928845 - MLT1D LTR MaLR -106 399 359 3489 219 34 33 chr4_random 5923049 5924211 -12927602 + L1MB3 LINE L1 4910 6183 0 355 328 0 0 chr4_random 5924221 5924343 -12927470 + L1ME3A LINE L1 5817 5938 -232 2744 157 52 0 chr4_random 5926128 5926586 -12925227 + LTR43 LTR ERV1 121 602 0 2251 262 79 64 chr4_random 5926586 5927752 -12924061 + LTR43-int LTR ERV1 1 1662 -3842 290 216 0 0 chr4_random 5928304 5928355 -12923458 + LTR43-int LTR ERV1 3842 3892 -906 2875 209 53 29 chr4_random 5928361 5929008 -12922805 + LTR43-int LTR ERV1 4136 4797 -1 3509 143 18 36 chr4_random 5929024 5929070 -12922743 + LTR43 LTR ERV1 6 51 -551 5700 136 37 21 chr4_random 5929070 5930024 -12921789 + LTR5 LTR ERVK 1 969 0 3509 143 18 36 chr4_random 5930024 5930209 -12921604 + LTR43 LTR ERV1 51 238 -364 1927 163 0 0 chr4_random 5930209 5930504 -12921309 + AluSx SINE Alu 5 299 -13 3509 143 18 36 chr4_random 5930504 5930879 -12920934 + LTR43 LTR ERV1 238 602 0 699 266 32 40 chr4_random 5930879 5931535 -12920278 + BSR/Beta Satellite Satellite 1 650 -62 1359 287 26 11 chr4_random 5931557 5931997 -12919816 - BSR/Beta Satellite Satellite -71 446 1 737 266 23 24 chr4_random 5932103 5933914 -12917899 - BSR/Beta Satellite Satellite -15 1808 1 632 65 22 0 chr4_random 5933952 5934044 -12917769 + AluSg/x SINE Alu 216 309 0 257 148 0 37 chr4_random 5934254 5934308 -12917505 - L1MA6 LINE L1 -32 6268 6217 * 307 209 0 2 chr4_random 5934301 5934368 -12917445 + L1MA6 LINE L1 6223 6291 -9 243 200 0 0 chr4_random 5934413 5934463 -12917350 + L1MA7 LINE L1 6233 6282 -9 2309 182 53 2 chr4_random 5934578 5935006 -12916807 - L1MA6 LINE L1 -68 6232 5777 309 51 0 0 chr4_random 5935006 5935045 -12916768 + (TG)n Simple_repeat Simple_repeat 2 40 0 2309 182 53 2 chr4_random 5935045 5935083 -12916730 - L1MA6 LINE L1 -523 5777 5742 1138 129 5 57 chr4_random 5935079 5935288 -12916525 + L1MA6 LINE L1 5527 5724 -576 * 246 67 0 0 chr4_random 5936193 5936223 -12915590 - Alu SINE Alu -188 113 84 941 191 27 49 chr4_random 5936223 5936448 -12915365 - AluJo SINE Alu -92 220 1 2057 84 18 0 chr4_random 5936473 5936758 -12915055 + AluSg SINE Alu 1 290 -20 1495 199 30 7 chr4_random 5936779 5937080 -12914733 - L1MC1 LINE L1 -233 6100 5793 793 240 58 0 chr4_random 5937082 5937324 -12914489 + L1MC1 LINE L1 6077 6332 -1 25 65 0 0 chr4_random 5937485 5937531 -12914282 + AT_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr4_random 5937746 5937780 -12914033 + AT_rich Low_complexity Low_complexity 1 34 0 272 154 52 22 chr4_random 5938609 5938745 -12913068 + (CA)n Simple_repeat Simple_repeat 2 141 0 269 122 55 61 chr4_random 5938780 5938961 -12912852 + (CA)n Simple_repeat Simple_repeat 1 180 0 352 136 54 37 chr4_random 5939014 5939317 -12912496 + (CA)n Simple_repeat Simple_repeat 1 308 0 359 96 27 62 chr4_random 5939331 5939477 -12912336 + (CA)n Simple_repeat Simple_repeat 1 141 0 305 148 49 31 chr4_random 5939504 5939666 -12912147 + (CA)n Simple_repeat Simple_repeat 1 165 0 236 100 25 0 chr4_random 5940807 5940847 -12910966 + (CA)n Simple_repeat Simple_repeat 2 42 0 206 299 35 23 chr4_random 5941283 5941370 -12910443 + MER5B DNA MER1_type 1 88 -90 1334 194 20 32 chr4_random 5941855 5942137 -12909676 - AluJb SINE Alu 0 313 35 196 375 0 0 chr4_random 5942897 5942945 -12908868 + L2 LINE L2 3203 3250 -22 191 308 55 22 chr4_random 5943081 5943172 -12908641 - MER5B DNA MER1_type -84 94 1 237 358 100 39 chr4_random 5943386 5943615 -12908198 + MIR SINE MIR 18 260 -2 935 276 73 0 chr4_random 5944241 5944542 -12907271 - LTR53 LTR ERVL -8 511 189 4208 254 37 31 chr4_random 5945038 5946283 -12905530 - HERVL74 LTR ERVL -2314 3371 2117 1802 166 0 7 chr4_random 5946283 5946579 -12905234 + AluJo SINE Alu 1 294 -18 4208 254 37 31 chr4_random 5946579 5946607 -12905206 - HERVL74 LTR ERVL -3568 2117 2091 1223 219 81 0 chr4_random 5946773 5947033 -12904780 - HERVL74 LTR ERVL -3590 2095 1815 1880 207 106 14 chr4_random 5947033 5947467 -12904346 - MLT2B1 LTR ERVL -46 474 1 247 105 0 0 chr4_random 5947467 5947504 -12904309 - U5 snRNA snRNA -76 40 4 5985 174 17 46 chr4_random 5947504 5950037 -12901776 + L1PB1 LINE L1 3817 6151 0 2352 208 54 59 chr4_random 5950087 5950340 -12901473 - HERVL74 LTR ERVL -3894 1791 1538 1563 209 16 19 chr4_random 5950340 5950647 -12901166 + AluJo SINE Alu 1 306 -6 2352 208 54 59 chr4_random 5950647 5951057 -12900756 - HERVL74 LTR ERVL -4147 1538 1131 961 126 6 6 chr4_random 5951137 5951304 -12900509 + (TTCC)n Simple_repeat Simple_repeat 2 168 0 729 150 0 0 chr4_random 5951315 5951448 -12900365 + CT-rich Low_complexity Low_complexity 2 134 0 501 210 140 13 chr4_random 5951462 5951619 -12900194 - HERVL74 LTR ERVL -2587 969 793 272 261 92 0 chr4_random 5951692 5951757 -12900056 + tRNA-Met-i tRNA tRNA 3 73 -2 1358 143 74 0 chr4_random 5951815 5952032 -12899781 + HUERS-P1 LTR ERV1 6348 6580 -957 * 1797 97 8 4 chr4_random 5952031 5952299 -12899514 + HUERS-P1 LTR ERV1 4557 4825 -1438 417 200 0 0 chr4_random 5952299 5952374 -12899439 + MSTB LTR MaLR 33 107 -319 1405 146 134 4 chr4_random 5952375 5952650 -12899163 + MSTA LTR MaLR 47 357 -71 4782 107 12 0 chr4_random 5952681 5953365 -12898448 - L1PA10 LINE L1 -1 6167 5476 * 8038 42 9 0 chr4_random 5953360 5955139 -12896674 - L1PA4 LINE L1 -3 6152 4362 1426 125 5 0 chr4_random 5955239 5955439 -12896374 - AluSp SINE Alu -109 204 4 2038 147 0 0 chr4_random 5955455 5955755 -12896058 - AluSq SINE Alu -13 300 1 2065 123 0 0 chr4_random 5956318 5956603 -12895210 + AluY SINE Alu 1 285 -26 29 47 0 0 chr4_random 5956603 5956646 -12895167 + AT_rich Low_complexity Low_complexity 1 43 0 2838 174 12 58 chr4_random 5956646 5956903 -12894910 - MER57B-int LTR ERV1 -6998 539 272 2084 138 0 0 chr4_random 5956903 5957201 -12894612 + AluSx SINE Alu 4 301 -11 2838 174 12 58 chr4_random 5957201 5957508 -12894305 - MER57B-int LTR ERV1 -7265 272 1 2659 137 16 7 chr4_random 5957508 5957938 -12893875 - MER57B LTR ERV1 0 434 1 1076 96 0 19 chr4_random 5957938 5958095 -12893718 + MER4E LTR ERV1 613 766 0 1154 240 14 11 chr4_random 5958095 5958382 -12893431 + L1ME2 LINE L1 5802 6089 -75 234 0 0 0 chr4_random 5958419 5958445 -12893368 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 379 291 122 25 chr4_random 5958820 5959016 -12892797 - LTR33 LTR ERVL 0 521 307 386 286 79 14 chr4_random 5959262 5959402 -12892411 - LTR16C LTR ERVL -109 382 234 671 327 114 40 chr4_random 5959801 5960309 -12891504 - L2 LINE L2 -206 3107 2544 32 0 0 0 chr4_random 5961902 5961934 -12889879 + AT_rich Low_complexity Low_complexity 1 32 0 2524 244 75 18 chr4_random 5961934 5962733 -12889080 + L1ME1 LINE L1 5316 6160 -6 231 254 0 0 chr4_random 5962733 5962792 -12889021 + L1ME1 LINE L1 6101 6159 -7 413 279 64 54 chr4_random 5962817 5963315 -12888498 + L1ME3A LINE L1 3345 3847 -2299 399 193 80 106 chr4_random 5963310 5963404 -12888409 + L1MC4 LINE L1 7759 7854 -188 * 1939 149 79 18 chr4_random 5963404 5963747 -12888066 - THE1B LTR MaLR 0 364 1 399 193 80 106 chr4_random 5963747 5963916 -12887897 + L1MC4 LINE L1 7854 8015 -27 893 291 97 24 chr4_random 5964074 5964841 -12886972 + L1ME3A LINE L1 3992 4814 -1332 1470 297 90 18 chr4_random 5965099 5965980 -12885833 + L1ME3A LINE L1 5225 6166 -4 22 0 0 0 chr4_random 5966948 5966970 -12884843 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4_random 5967035 5967064 -12884749 + AT_rich Low_complexity Low_complexity 1 29 0 319 374 0 0 chr4_random 5967104 5967235 -12884578 - L1M4 LINE L1 -3325 2821 2691 326 268 81 60 chr4_random 5967399 5967634 -12884179 - L1M4 LINE L1 -3692 2454 2215 406 327 101 35 chr4_random 5967700 5968098 -12883715 - LTR33 LTR ERVL -67 454 31 1881 320 19 10 chr4_random 5968972 5969600 -12882213 - ERVL LTR ERVL -1075 4689 4056 484 328 162 20 chr4_random 5969655 5970063 -12881750 - ERVL LTR ERVL -2101 3553 3088 286 350 17 8 chr4_random 5970133 5970250 -12881563 - ERVL LTR ERVL -2726 3038 2921 730 154 7 37 chr4_random 5970307 5970443 -12881370 + FLAM_C SINE Alu 1 132 -1 633 301 39 27 chr4_random 5970480 5970908 -12880905 - LTR33 LTR ERVL -57 464 1 22 35 0 0 chr4_random 5971495 5971524 -12880289 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4_random 5973071 5973092 -12878721 + AT_rich Low_complexity Low_complexity 1 21 0 309 284 43 17 chr4_random 5973389 5973505 -12878308 + L3 LINE CR1 1152 1270 -307 254 317 0 50 chr4_random 5973623 5973724 -12878089 + L3 LINE CR1 1481 1576 -1 237 337 83 36 chr4_random 5973813 5974006 -12877807 + MIR SINE MIR 3 204 -58 23 0 0 0 chr4_random 5974365 5974388 -12877425 + AT_rich Low_complexity Low_complexity 1 23 0 447 332 85 50 chr4_random 5974509 5975455 -12876358 + L1MEc LINE L1 36 1014 -5382 417 315 31 17 chr4_random 5975519 5975811 -12876002 + L1MEc LINE L1 1489 1784 -4612 11439 53 3 4 chr4_random 5976542 5978750 -12873063 + L1PA5 LINE L1 3928 6134 -20 254 228 30 50 chr4_random 5978871 5978972 -12872841 + L1ME2 LINE L1 5710 5808 -356 707 236 100 35 chr4_random 5978988 5979247 -12872566 + L1ME2 LINE L1 5888 6163 -1 1706 244 82 51 chr4_random 5979489 5980095 -12871718 + MLT1E2 LTR MaLR 1 625 -1 1371 164 82 43 chr4_random 5980226 5980567 -12871246 - THE1C LTR MaLR 0 375 1 251 370 170 0 chr4_random 5981984 5982184 -12869629 - MIR SINE MIR -4 258 25 1050 203 19 47 chr4_random 5982429 5982685 -12869128 + MER96B DNA MER1_type? 1 249 -168 22 35 0 0 chr4_random 5982944 5982973 -12868840 + AT_rich Low_complexity Low_complexity 1 29 0 392 352 84 28 chr4_random 5983550 5983837 -12867976 + HAL1b LINE L1 631 933 -415 1711 141 53 53 chr4_random 5984420 5984600 -12867213 + THE1C LTR MaLR 1 180 -195 1935 144 7 7 chr4_random 5984600 5984891 -12866922 + AluSx SINE Alu 7 297 -15 1711 141 53 53 chr4_random 5984891 5985085 -12866728 + THE1C LTR MaLR 179 375 0 1353 160 4 0 chr4_random 5985171 5985409 -12866404 - Tigger5 DNA MER2_type 0 2323 2085 317 206 0 16 chr4_random 5985430 5985493 -12866320 - Tigger5 DNA MER2_type -2261 62 1 285 75 0 0 chr4_random 5985512 5985552 -12866261 + (CA)n Simple_repeat Simple_repeat 2 41 0 220 259 0 0 chr4_random 5985553 5985607 -12866206 + GA-rich Low_complexity Low_complexity 1 54 0 274 248 81 45 chr4_random 5985700 5985898 -12865915 + L1ME3A LINE L1 4132 4336 -1810 326 250 0 0 chr4_random 5985955 5986023 -12865790 - MER96B DNA MER1_type? -107 68 1 499 297 6 0 chr4_random 5986034 5986199 -12865614 + L1ME3A LINE L1 5401 5566 -604 372 200 0 12 chr4_random 5986288 5986373 -12865440 + L1ME3A LINE L1 5794 5877 -293 1333 230 117 20 chr4_random 5986395 5986750 -12865063 - MLT1D LTR MaLR 0 505 93 2061 130 3 16 chr4_random 5986750 5987065 -12864748 - AluSx SINE Alu -1 311 1 1333 230 117 20 chr4_random 5987065 5987169 -12864644 - MLT1D LTR MaLR -412 93 1 22 35 0 0 chr4_random 5987395 5987424 -12864389 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4_random 5987441 5987465 -12864348 + AT_rich Low_complexity Low_complexity 1 24 0 325 227 50 34 chr4_random 5987489 5987608 -12864205 + HAL1b LINE L1 1083 1203 -145 230 193 105 53 chr4_random 5987768 5987882 -12863931 + HAL1b LINE L1 1227 1346 -2 233 299 95 95 chr4_random 5987954 5988175 -12863638 - MIR SINE MIR -12 250 30 1361 152 19 23 chr4_random 5989141 5989287 -12862526 + L1PA16 LINE L1 5902 6048 -118 1825 160 137 13 chr4_random 5989287 5989668 -12862145 - MSTA LTR MaLR 0 428 1 1361 152 19 23 chr4_random 5989668 5989778 -12862035 + L1PA16 LINE L1 6048 6157 -9 201 146 49 0 chr4_random 5989787 5989828 -12861985 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 180 0 0 0 chr4_random 5990487 5990507 -12861306 + (TTCA)n Simple_repeat Simple_repeat 2 21 0 785 160 141 0 chr4_random 5990968 5991124 -12860689 + MER58A DNA MER1_type 34 211 -13 1684 123 0 4 chr4_random 5991411 5991677 -12860136 + AluY SINE Alu 39 303 0 380 325 18 9 chr4_random 5992213 5992327 -12859486 - MER5A DNA MER1_type -15 174 60 1056 190 54 47 chr4_random 5992331 5992737 -12859076 - LTR37A LTR ERV1 0 426 18 282 206 16 0 chr4_random 5993275 5993338 -12858475 - L1MA6 LINE L1 -14 7246 7183 963 178 41 5 chr4_random 5993343 5993540 -12858273 - L1MA6 LINE L1 -293 6967 6764 736 168 121 0 chr4_random 5993547 5993696 -12858117 + MSTA LTR MaLR 1 167 -261 607 229 49 0 chr4_random 5993689 5993833 -12857980 + MSTA LTR MaLR 278 428 0 * 7951 181 25 7 chr4_random 5993833 5996062 -12855751 - L1MA6 LINE L1 -510 6750 4478 1432 224 38 3 chr4_random 5996062 5996352 -12855461 - AluJo SINE Alu -5 307 8 4355 260 44 17 chr4_random 5996363 5999809 -12852004 - L1MA6 LINE L1 -2626 4480 929 341 250 10 19 chr4_random 5999850 5999954 -12851859 - L1MA6 LINE L1 -6921 109 7 292 308 56 9 chr4_random 6000100 6000207 -12851606 + MIR SINE MIR 80 191 -71 908 214 75 46 chr4_random 6000556 6000900 -12850913 - MER67C LTR ERV1 -3 511 173 346 232 18 62 chr4_random 6000901 6001013 -12850800 - MLT1I LTR MaLR -240 169 63 233 53 158 0 chr4_random 6001129 6001167 -12850646 - L1M2 LINE L1 -540 5751 5708 340 303 157 22 chr4_random 6001479 6001657 -12850156 + MIR SINE MIR 24 225 -37 180 314 108 0 chr4_random 6001773 6001875 -12849938 - MIR SINE MIR -70 192 80 678 192 0 8 chr4_random 6003480 6003605 -12848208 - FLAM_C SINE Alu -17 126 3 244 353 26 17 chr4_random 6004024 6004140 -12847673 + MIR SINE MIR 24 140 -122 193 349 64 0 chr4_random 6004312 6004421 -12847392 - MIR SINE MIR -66 196 81 213 120 40 20 chr4_random 6004909 6004959 -12846854 + (TA)n Simple_repeat Simple_repeat 1 51 0 1640 192 85 40 chr4_random 6005188 6005668 -12846145 - MLT1D LTR MaLR -3 502 1 766 203 13 110 chr4_random 6005989 6006216 -12845597 - MLT1A1 LTR MaLR 0 365 161 265 254 140 18 chr4_random 6006262 6006376 -12845437 - MLT1A1 LTR MaLR -268 128 1 277 289 0 11 chr4_random 6006908 6006998 -12844815 + LTR67 LTR ERVL 434 522 -35 721 316 70 34 chr4_random 6007842 6008259 -12843554 - MLT1K LTR MaLR -10 578 147 655 326 12 0 chr4_random 6008261 6008433 -12843380 - MER91A DNA MER1_type 0 196 23 7268 227 35 7 chr4_random 6009037 6011296 -12840517 + L1M4c LINE L1 2187 4510 -1872 356 215 32 11 chr4_random 6011297 6011390 -12840423 + MER2 DNA MER2_type 1 95 -250 382 156 16 0 chr4_random 6011390 6011454 -12840359 - MER2 DNA MER2_type 0 345 281 3942 207 46 18 chr4_random 6011524 6012814 -12838999 + L1MA9 LINE L1 4512 5879 -669 1756 167 42 0 chr4_random 6012814 6013101 -12838712 + AluJo SINE Alu 1 299 -13 3942 207 46 18 chr4_random 6013101 6013707 -12838106 + L1MA9 LINE L1 5879 6467 -81 39385 45 24 3 chr4_random 6013712 6019733 -12832080 + L1PA2 LINE L1 1 6155 0 1193 209 91 1 chr4_random 6020008 6020474 -12831339 - Charlie1b DNA MER1_type 0 523 22 304 313 66 30 chr4_random 6020843 6021009 -12830804 + MLT1J2 LTR MaLR 258 429 -21 1985 160 0 3 chr4_random 6021073 6021367 -12830446 + AluSx SINE Alu 1 293 -19 431 343 46 6 chr4_random 6021408 6021583 -12830230 - MIR SINE MIR -32 230 49 320 213 133 0 chr4_random 6021830 6021905 -12829908 - MIR3 SINE MIR -48 160 76 2277 159 21 17 chr4_random 6022605 6023071 -12828742 - L1MB7 LINE L1 0 6184 5717 250 219 0 68 chr4_random 6023608 6023681 -12828132 - L2 LINE L2 -83 3230 3163 305 263 193 29 chr4_random 6023897 6024068 -12827745 - MIR SINE MIR 0 262 64 2148 120 7 0 chr4_random 6024106 6024457 -12827356 - AluSq SINE Alu 0 313 1 1972 120 34 24 chr4_random 6025103 6025394 -12826419 + AluSq SINE Alu 1 294 -19 694 176 0 0 chr4_random 6025403 6025511 -12826302 - FLAM_A SINE Alu -34 108 1 630 246 84 11 chr4_random 6025524 6025703 -12826110 - MIR SINE MIR -64 198 7 313 232 179 18 chr4_random 6026274 6026386 -12825427 - L2 LINE L2 -2 3270 3141 268 253 154 68 chr4_random 6026757 6026978 -12824835 + LTR33 LTR ERVL 47 286 -235 292 304 32 16 chr4_random 6027030 6027155 -12824658 + LTR33 LTR ERVL 390 516 -5 285 139 0 0 chr4_random 6027494 6027537 -12824276 - MIR SINE MIR -62 146 104 644 198 124 45 chr4_random 6027655 6027857 -12823956 + MIR SINE MIR 23 240 -22 276 275 25 0 chr4_random 6028759 6028839 -12822974 + MIR3 SINE MIR 112 193 -15 456 329 21 7 chr4_random 6030033 6030176 -12821637 + L2 LINE L2 3127 3271 -1 2172 130 7 0 chr4_random 6030514 6030821 -12820992 - AluSx SINE Alu -3 309 1 658 339 63 21 chr4_random 6030822 6031054 -12820759 - L2 LINE L2 -8 3305 3052 2318 88 0 0 chr4_random 6031054 6031405 -12820408 + AluSp SINE Alu 1 351 0 658 339 63 21 chr4_random 6031405 6031504 -12820309 - L2 LINE L2 -261 3052 2959 414 266 182 0 chr4_random 6031645 6031788 -12820025 + MER5A DNA MER1_type 21 189 0 531 195 101 41 chr4_random 6032525 6032694 -12819119 + MIR SINE MIR 13 191 -71 1728 146 73 0 chr4_random 6032694 6032955 -12818858 + AluJb SINE Alu 1 280 -32 282 229 0 0 chr4_random 6033025 6033073 -12818740 + MIR SINE MIR 37 84 -124 349 287 39 41 chr4_random 6033073 6033110 -12818703 + MIR3 SINE MIR 28 64 -144 1949 137 10 3 chr4_random 6033110 6033403 -12818410 - AluSx SINE Alu -13 299 5 349 287 39 41 chr4_random 6033403 6033534 -12818279 + MIR3 SINE MIR 64 202 -6 270 0 0 0 chr4_random 6033899 6033929 -12817884 + (TG)n Simple_repeat Simple_repeat 2 31 0 332 324 48 0 chr4_random 6034224 6034369 -12817444 - L2 LINE L2 -20 3252 3101 1801 168 3 19 chr4_random 6036750 6037059 -12814754 - AluJb SINE Alu -8 304 1 460 246 45 37 chr4_random 6037471 6037605 -12814208 - L2 LINE L2 -1 3271 3137 507 221 83 33 chr4_random 6037622 6037803 -12814010 - L2 LINE L2 -2 3311 3122 2019 125 0 4 chr4_random 6038722 6039003 -12812810 - AluSx SINE Alu -11 301 22 1348 135 98 105 chr4_random 6039009 6039305 -12812508 - AluJo SINE Alu -10 302 9 321 228 109 0 chr4_random 6039796 6039888 -12811925 + L2 LINE L2 3202 3303 -10 23 86 0 0 chr4_random 6041578 6041636 -12810177 + AT_rich Low_complexity Low_complexity 1 58 0 261 236 19 29 chr4_random 6042694 6042855 -12808958 - MIR SINE MIR -2 260 29 799 81 9 0 chr4_random 6042964 6043075 -12808738 + HY1 scRNA scRNA 1 112 0 183 321 18 0 chr4_random 6043112 6043168 -12808645 + MIR SINE MIR 37 93 -115 552 286 62 0 chr4_random 6043270 6043448 -12808365 + MIR SINE MIR 64 252 -10 2208 115 0 3 chr4_random 6043630 6043935 -12807878 + AluSx SINE Alu 1 304 -8 1189 254 113 26 chr4_random 6046527 6046705 -12805108 + L2 LINE L2 2537 2698 -615 2011 145 0 0 chr4_random 6046705 6046994 -12804819 + AluSg SINE Alu 1 289 -21 1189 254 113 26 chr4_random 6046994 6047535 -12804278 + L2 LINE L2 2698 3290 -23 229 224 56 47 chr4_random 6048612 6048719 -12803094 + L1MC4a LINE L1 6088 6195 -1613 201 211 96 67 chr4_random 6048854 6048958 -12802855 - MIR SINE MIR -86 122 16 395 242 11 0 chr4_random 6049218 6049309 -12802504 + MIR SINE MIR 56 147 -115 240 59 0 0 chr4_random 6051841 6051875 -12799938 + (CA)n Simple_repeat Simple_repeat 1 34 0 236 268 96 51 chr4_random 6051919 6052076 -12799737 - SST1 Satellite centromeric -11 1552 1389 522 281 127 51 chr4_random 6052263 6052847 -12798966 - SST1 Satellite centromeric -804 759 132 974 188 11 5 chr4_random 6052956 6054118 -12797695 + ALR/Alpha Satellite centromeric 1 1213 -957 185 62 0 31 chr4_random 6054118 6054150 -12797663 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 974 188 11 5 chr4_random 6054150 6055110 -12796703 + ALR/Alpha Satellite centromeric 1213 2166 -4 871 194 0 0 chr4_random 6055138 6055376 -12796437 + ALR/Alpha Satellite centromeric 1 238 -20 234 0 0 0 chr4_random 6055384 6055410 -12796403 + (A)n Simple_repeat Simple_repeat 1 26 0 944 193 6 8 chr4_random 6055410 6058958 -12792855 + ALR/Alpha Satellite centromeric 1 3541 -7 901 204 13 9 chr4_random 6058969 6059363 -12792450 + ALR/Alpha Satellite centromeric 1 392 -1239 2272 81 54 0 chr4_random 6059363 6059658 -12792155 + AluY SINE Alu 1 311 0 901 204 13 9 chr4_random 6059658 6060590 -12791223 + ALR/Alpha Satellite centromeric 392 1627 -4 2854 27 0 0 chr4_random 6060592 6060922 -12790891 - L1PA3 LINE L1 -1 6154 5825 1470 40 0 0 chr4_random 6060922 6061097 -12790716 + L1PA3 LINE L1 5640 5814 -341 999 211 10 2 chr4_random 6061097 6062876 -12788937 + ALR/Alpha Satellite centromeric 1 1792 -18 226 37 0 0 chr4_random 6062876 6062903 -12788910 - L1M LINE L1 -2585 5410 5384 942 199 0 0 chr4_random 6062919 6063075 -12788738 + AluJb SINE Alu 137 292 -20 1966 154 0 7 chr4_random 6063078 6063377 -12788436 + AluY SINE Alu 1 297 -14 4964 171 29 12 chr4_random 6063383 6064348 -12787465 - L1MC2 LINE L1 -3 6341 5361 216 350 71 14 chr4_random 6064872 6065012 -12786801 - MIR SINE MIR -97 165 18 528 65 0 0 chr4_random 6065657 6065734 -12786079 + (TC)n Simple_repeat Simple_repeat 2 78 0 396 0 0 0 chr4_random 6065733 6065777 -12786036 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 1467 162 77 18 chr4_random 6065783 6066055 -12785758 - AluSg SINE Alu -20 290 3 768 252 78 30 chr4_random 6066072 6066405 -12785408 - L1MA9 LINE L1 -30 6282 5934 312 111 0 22 chr4_random 6066424 6066469 -12785344 - Alu SINE Alu -262 46 3 21 0 0 0 chr4_random 6066800 6066821 -12784992 + AT_rich Low_complexity Low_complexity 1 21 0 1686 111 4 29 chr4_random 6066821 6067090 -12784723 - AluSg/x SINE Alu 0 335 73 1844 288 26 11 chr4_random 6117104 6117718 -12734095 - PRIMA41-int LTR ERV1 -2620 5136 4514 1013 136 12 0 chr4_random 6117718 6117880 -12733933 + THE1B LTR MaLR 1 164 -200 1345 139 99 0 chr4_random 6117880 6118130 -12733683 - AluSg SINE Alu 0 309 38 2899 114 54 22 chr4_random 6118241 6118627 -12733186 + Tigger1 DNA MER2_type 1756 2163 -255 3140 213 22 78 chr4_random 6118627 6119649 -12732164 + LTR5 LTR ERVK 5 969 0 2899 114 54 22 chr4_random 6119649 6119763 -12732050 + Tigger1 DNA MER2_type 2163 2272 -146 21 0 0 0 chr4_random 6119780 6119801 -12732012 + AT_rich Low_complexity Low_complexity 1 21 0 476 32 16 0 chr4_random 6120056 6120118 -12731695 + (GAAAA)n Simple_repeat Simple_repeat 3 65 0 487 262 107 31 chr4_random 6120160 6120477 -12731336 + L1PB4 LINE L1 5807 6147 -9 229 196 20 0 chr4_random 6120494 6120545 -12731268 + (CAG)n Simple_repeat Simple_repeat 1 52 0 2378 75 3 0 chr4_random 6120885 6121190 -12730623 + AluY SINE Alu 1 306 -5 971 193 6 0 chr4_random 6121190 6121356 -12730457 + AluJo/FRAM SINE Alu 137 303 -9 295 229 16 0 chr4_random 6121360 6121421 -12730392 - Tigger1 DNA MER2_type 0 2418 2357 1965 145 3 16 chr4_random 6121610 6121943 -12729870 - AluSx SINE Alu 0 312 1 578 188 109 0 chr4_random 6122275 6122403 -12729410 + MER4B LTR ERV1 9 150 -460 27 29 0 0 chr4_random 6122405 6122439 -12729374 + AT_rich Low_complexity Low_complexity 1 34 0 5016 149 32 26 chr4_random 6122439 6123465 -12728348 - L1MA2 LINE L1 -5 6299 5268 1136 147 23 81 chr4_random 6123470 6123524 -12728289 - THE1C LTR MaLR 0 375 319 2034 136 3 0 chr4_random 6123524 6123811 -12728002 - AluSg1 SINE Alu -20 289 2 1136 147 23 81 chr4_random 6123811 6124015 -12727798 - THE1C LTR MaLR -56 319 132 1047 170 6 2 chr4_random 6124115 6129585 -12722228 - ALR/Alpha Satellite centromeric 0 5494 1 6759 65 4 8 chr4_random 6129585 6130712 -12721101 + L1PA4 LINE L1 5028 6152 -3 1041 148 2 0 chr4_random 6130760 6132462 -12719351 - ALR/Alpha Satellite centromeric 0 1705 1 297 307 87 8 chr4_random 6132566 6132693 -12719120 - MIR3 SINE MIR -6 202 66 15798 50 4 3 chr4_random 6132894 6135945 -12715868 + L1PA4 LINE L1 3102 6155 0 2960 236 63 49 chr4_random 6135940 6137187 -12714626 - L1 LINE L1 -794 5240 3977 * 771 299 84 46 chr4_random 6137189 6137241 -12714572 - L1 LINE L1 -5090 865 816 2154 106 0 0 chr4_random 6137241 6137552 -12714261 - AluSg1 SINE Alu 0 309 1 771 299 84 46 chr4_random 6137552 6137891 -12713922 - L1 LINE L1 -5139 816 459 540 228 105 12 chr4_random 6137925 6138096 -12713717 - L1 LINE L1 -1414 4620 4434 294 218 64 39 chr4_random 6138096 6138174 -12713639 - L1 LINE L1 -5770 185 106 404 265 20 0 chr4_random 6138174 6138276 -12713537 - FLAM_C SINE Alu -37 106 3 396 267 9 19 chr4_random 6138278 6138383 -12713430 - L1 LINE L1 -5850 105 2 3015 266 89 26 chr4_random 6140477 6141682 -12710131 + L1MEc LINE L1 235 1322 -4893 2111 130 3 3 chr4_random 6141682 6141983 -12709830 + AluSx SINE Alu 1 301 -11 3015 266 89 26 chr4_random 6141983 6142016 -12709797 + L1MEc LINE L1 1322 1351 -4864 470 143 0 0 chr4_random 6142016 6142086 -12709727 + AluJ/FLAM SINE Alu 2 71 -241 2583 165 19 52 chr4_random 6142189 6142397 -12709416 - Tigger1 DNA MER2_type -914 1504 1291 1900 151 3 22 chr4_random 6142397 6142715 -12709098 - AluSq SINE Alu -1 312 1 2583 165 19 52 chr4_random 6142715 6142740 -12709073 - Tigger1 DNA MER2_type -1127 1291 1267 261 0 0 0 chr4_random 6142740 6142769 -12709044 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2583 165 19 52 chr4_random 6142769 6143050 -12708763 - Tigger1 DNA MER2_type -1151 1267 1006 550 184 19 0 chr4_random 6143045 6143148 -12708665 - Tigger1 DNA MER2_type -1908 510 406 * 350 286 30 28 chr4_random 6144087 6144399 -12707414 - LSAU Satellite Satellite 0 498 141 512 208 0 22 chr4_random 6144450 6144628 -12707185 + GA-rich Low_complexity Low_complexity 4 177 0 525 193 0 0 chr4_random 6145723 6145868 -12705945 + (CA)n Simple_repeat Simple_repeat 2 146 0 406 307 7 0 chr4_random 6145872 6146025 -12705788 + GA-rich Low_complexity Low_complexity 1 154 0 565 191 17 17 chr4_random 6146909 6147024 -12704789 - FLAM_C SINE Alu -18 115 1 234 191 0 0 chr4_random 6148161 6148208 -12703605 - LTR66 LTR ERVL -170 440 394 3015 237 61 19 chr4_random 6148314 6149226 -12702587 - L1MA9 LINE L1 -25 6287 5337 17629 87 1 1 chr4_random 6149235 6151549 -12700264 + L1P LINE L1 7 2320 -3826 1317 121 3 1 chr4_random 6151655 6161557 -12690256 - ALR/Alpha Satellite centromeric 0 9919 1 18858 49 2 0 chr4_random 6161557 6163898 -12687915 + L1P LINE L1 1904 4248 -1898 1073 253 74 38 chr4_random 6164023 6164442 -12687371 - L1MD2 LINE L1 -18 6341 5908 22 35 0 0 chr4_random 6165414 6165443 -12686370 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr4_random 6166498 6166520 -12685293 + GC_rich Low_complexity Low_complexity 1 22 0 329 159 35 53 chr4_random 6166574 6166687 -12685126 - MER45C DNA AcHobo -355 598 488 596 163 108 16 chr4_random 6168954 6169083 -12682730 + AluJb SINE Alu 1 141 -171 34 45 0 15 chr4_random 6169104 6169122 -12682691 + AT_rich Low_complexity Low_complexity 1 18 -47 2226 90 0 3 chr4_random 6169122 6169410 -12682403 + AluY SINE Alu 1 287 -24 34 45 0 15 chr4_random 6169410 6169457 -12682356 + AT_rich Low_complexity Low_complexity 18 65 0 2144 117 7 0 chr4_random 6169464 6169764 -12682049 + AluSp SINE Alu 1 302 -11 315 71 0 0 chr4_random 6169823 6169865 -12681948 + (CCTG)n Simple_repeat Simple_repeat 1 42 0 620 139 0 133 chr4_random 6169866 6170032 -12681781 - AluJb SINE Alu -32 280 137 252 266 28 37 chr4_random 6170377 6170486 -12681327 + LTR54B LTR ERV1 39 146 -352 186 43 0 0 chr4_random 6172888 6172911 -12678902 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2140 124 0 3 chr4_random 6173307 6173628 -12678185 + AluSc SINE Alu 1 320 0 911 134 169 6 chr4_random 6174413 6174585 -12677228 + AluSg/x SINE Alu 96 295 -17 228 246 0 0 chr4_random 6175380 6175445 -12676368 + L1MC/D LINE L1 5665 5729 -630 543 206 0 0 chr4_random 6175856 6176031 -12675782 + GA-rich Low_complexity Low_complexity 2 176 0 239 177 48 0 chr4_random 6176031 6176093 -12675720 + (CAGA)n Simple_repeat Simple_repeat 1 65 0 551 195 0 6 chr4_random 6176093 6176257 -12675556 + GA-rich Low_complexity Low_complexity 2 164 0 317 196 0 10 chr4_random 6176279 6176381 -12675432 + GA-rich Low_complexity Low_complexity 2 102 0 567 174 0 0 chr4_random 6176402 6176551 -12675262 + GA-rich Low_complexity Low_complexity 2 150 0 642 192 3 3 chr4_random 6176588 6176915 -12674898 + GA-rich Low_complexity Low_complexity 1 327 0 224 189 0 0 chr4_random 6177001 6177038 -12674775 + (CAG)n Simple_repeat Simple_repeat 2 38 0 1895 102 11 21 chr4_random 6178165 6178471 -12673342 - AluSx SINE Alu 0 303 1 455 225 17 16 chr4_random 6178603 6178739 -12673074 - MER39B LTR ERV1 -242 411 299 798 178 0 0 chr4_random 6178739 6178972 -12672841 + GA-rich Low_complexity Low_complexity 1 233 0 1235 123 4 4 chr4_random 6179072 6181593 -12670220 - ALR/Alpha Satellite centromeric 0 2520 1 727 43 0 11 chr4_random 6181593 6181686 -12670127 - L1PA2 LINE L1 -368 5787 5696 3029 60 0 0 chr4_random 6181686 6182050 -12669763 + L1PA2 LINE L1 5775 6155 0 1202 162 2 2 chr4_random 6182060 6190146 -12661667 - ALR/Alpha Satellite centromeric 0 8089 1 612 22 22 22 chr4_random 6190299 6190390 -12661423 + (GAAAA)n Simple_repeat Simple_repeat 5 95 0 427 121 0 48 chr4_random 6190431 6190514 -12661299 - AluJb SINE Alu -79 233 155 1672 176 18 0 chr4_random 6190560 6190839 -12660974 - AluSx SINE Alu -28 284 1 285 29 0 0 chr4_random 6190985 6191019 -12660794 + (GA)n Simple_repeat Simple_repeat 1 34 0 1093 170 0 1 chr4_random 6191352 6192440 -12659373 - ALR/Alpha Satellite centromeric 0 1086 1 7791 20 3 2 chr4_random 6192540 6193573 -12658240 + L1PA3 LINE L1 5120 6155 0 902 180 17 2 chr4_random 6193573 6194134 -12657679 - ALR/Alpha Satellite centromeric 0 569 1 1147 158 6 2 chr4_random 6194145 6200949 -12650864 - ALR/Alpha Satellite centromeric 0 6825 1 1276 140 4 4 chr4_random 6200966 6204144 -12647669 - ALR/Alpha Satellite centromeric 0 3179 1 213 39 0 0 chr4_random 6204972 6204998 -12646815 + (GAAAA)n Simple_repeat Simple_repeat 5 30 0 668 231 122 53 chr4_random 6205032 6205352 -12646461 + L1PA16 LINE L1 5806 6147 -19 282 143 0 0 chr4_random 6205356 6205405 -12646408 + (CAA)n Simple_repeat Simple_repeat 2 50 0 738 171 0 0 chr4_random 6205540 6205761 -12646052 + GA-rich Low_complexity Low_complexity 1 221 0 590 193 6 0 chr4_random 6205817 6205988 -12645825 + GA-rich Low_complexity Low_complexity 2 173 0 487 204 0 12 chr4_random 6206007 6206042 -12645771 + GA-rich Low_complexity Low_complexity 2 36 -130 2337 87 0 0 chr4_random 6206042 6206340 -12645473 + AluY SINE Alu 3 300 -11 487 204 0 12 chr4_random 6206340 6206471 -12645342 + GA-rich Low_complexity Low_complexity 36 166 0 741 172 3 0 chr4_random 6206494 6206830 -12644983 + GA-rich Low_complexity Low_complexity 1 337 0 429 177 0 0 chr4_random 6206857 6206970 -12644843 + GA-rich Low_complexity Low_complexity 2 114 0 706 148 7 22 chr4_random 6207025 6207182 -12644631 - AluSg/x SINE Alu 0 310 178 322 239 0 53 chr4_random 6208315 6208428 -12643385 - MER45C DNA AcHobo -363 590 484 591 192 0 0 chr4_random 6208766 6208943 -12642870 + GA-rich Low_complexity Low_complexity 2 178 0 252 141 8 41 chr4_random 6208964 6209085 -12642728 + HERV17 LTR ERV1 702 818 -7808 249 139 0 0 chr4_random 6209171 6209214 -12642599 + (CAA)n Simple_repeat Simple_repeat 2 44 0 185 0 0 39 chr4_random 6209415 6209441 -12642372 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1912 104 3 21 chr4_random 6210343 6210671 -12641142 - AluSx SINE Alu 0 323 1 1199 51 29 0 chr4_random 6210840 6211015 -12640798 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 219 146 0 0 chr4_random 6211026 6211067 -12640746 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 341 175 0 0 chr4_random 6211069 6211126 -12640687 - AluJ/FLAM SINE Alu -242 60 4 765 201 132 92 chr4_random 6211202 6211359 -12640454 - AluJo SINE Alu -16 286 137 279 0 0 0 chr4_random 6211359 6211390 -12640423 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2194 92 4 0 chr4_random 6211396 6211677 -12640136 - AluSp SINE Alu -31 282 1 765 201 132 92 chr4_random 6211677 6211785 -12640028 - AluJo SINE Alu -169 133 3 486 0 0 0 chr4_random 6211824 6211878 -12639935 + (TTTC)n Simple_repeat Simple_repeat 2 55 0 234 0 0 0 chr4_random 6211893 6211919 -12639894 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 944 255 4 22 chr4_random 6212413 6212557 -12639256 + L1PA13 LINE L1 5888 6026 -137 189 0 0 0 chr4_random 6212557 6212578 -12639235 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 944 255 4 22 chr4_random 6212578 6212704 -12639109 + L1PA13 LINE L1 6026 6153 -10 393 117 0 0 chr4_random 6212707 6212767 -12639046 + (GA)n Simple_repeat Simple_repeat 1 60 0 1584 150 44 14 chr4_random 6212857 6213150 -12638663 - AluSx SINE Alu -1 311 10 315 114 0 0 chr4_random 6213255 6213299 -12638514 + AluSp/q SINE Alu 240 283 -20 222 116 0 0 chr4_random 6213314 6213357 -12638456 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1236 127 4 3 chr4_random 6213487 6218250 -12633563 + ALR/Alpha Satellite centromeric 1 4768 -75 890 54 0 0 chr4_random 6218350 6218461 -12633352 + L1PA3 LINE L1 6045 6155 0 545 172 0 130 chr4_random 6219043 6219212 -12632601 + AluJb SINE Alu 137 283 -29 2060 128 3 0 chr4_random 6219299 6219595 -12632218 - AluSp SINE Alu -12 301 5 34 45 0 15 chr4_random 6219606 6219653 -12632160 + AT_rich Low_complexity Low_complexity 1 48 -17 2258 73 7 3 chr4_random 6219653 6219939 -12631874 - AluY SINE Alu -24 287 1 34 45 0 15 chr4_random 6219939 6219957 -12631856 + AT_rich Low_complexity Low_complexity 48 65 0 594 150 118 8 chr4_random 6219978 6220105 -12631708 - AluJb SINE Alu -171 141 1 1234 127 3 3 chr4_random 6224274 6229694 -12622119 - ALR/Alpha Satellite centromeric 0 5420 1 1737 151 50 13 chr4_random 6229797 6230096 -12621717 - MSTA LTR MaLR -116 312 3 413 218 20 69 chr4_random 6230099 6230301 -12621512 + L1MEc LINE L1 2047 2238 -4158 210 267 0 53 chr4_random 6230997 6231072 -12620741 + L2 LINE L2 3239 3309 -4 1439 231 33 19 chr4_random 6231136 6231496 -12620317 - MLT1A1 LTR MaLR 0 365 1 249 260 0 48 chr4_random 6232526 6232630 -12619183 - L1ME4a LINE L1 -48 6073 5975 181 189 27 0 chr4_random 6233090 6233127 -12618686 - MER5A DNA MER1_type -137 52 15 229 291 42 74 chr4_random 6233381 6233433 -12618380 - L1ME4a LINE L1 -819 5327 5275 2229 112 3 0 chr4_random 6233433 6233727 -12618086 - AluSp SINE Alu -18 295 1 229 291 42 74 chr4_random 6233727 6233805 -12618008 - L1ME4a LINE L1 -871 5275 5196 2247 130 8 8 chr4_random 6233805 6234160 -12617653 - THE1A LTR MaLR 0 355 1 229 291 42 74 chr4_random 6234160 6234406 -12617407 - L1ME4a LINE L1 -950 5196 4962 537 236 24 98 chr4_random 6234497 6234743 -12617070 - MLT1H LTR MaLR -207 342 115 182 353 35 17 chr4_random 6235236 6235352 -12616461 + MIR3 SINE MIR 13 130 -78 299 259 27 27 chr4_random 6235637 6235749 -12616064 - LTR41 LTR ERVL -6 767 656 2010 163 0 3 chr4_random 6236770 6237083 -12614730 - AluSx SINE Alu 0 312 1 295 221 60 166 chr4_random 6237094 6237310 -12614503 + MLT1I LTR MaLR 114 285 -124 2005 129 0 0 chr4_random 6237310 6237589 -12614224 + AluY SINE Alu 1 279 -32 295 221 60 166 chr4_random 6237589 6237703 -12614110 + MLT1I LTR MaLR 285 409 0 475 264 75 13 chr4_random 6237703 6237862 -12613951 - MIR SINE MIR -67 195 27 701 158 19 0 chr4_random 6237896 6238002 -12613811 - BSR/Beta Satellite Satellite 0 107 1 2030 159 12 56 chr4_random 6238281 6238690 -12613123 - MSTD LTR MaLR -2 394 4 551 216 7 16 chr4_random 6238959 6239277 -12612536 + CT-rich Low_complexity Low_complexity 1 315 0 305 237 26 66 chr4_random 6239323 6239475 -12612338 + L1M4 LINE L1 3422 3567 -2579 443 314 36 58 chr4_random 6239719 6240133 -12611680 - L1MC4a LINE L1 -1880 5928 5524 4107 248 37 41 chr4_random 6240399 6242241 -12609572 + L1PA7 LINE L1 10 1825 -4626 9625 133 5 61 chr4_random 6242245 6244385 -12607428 + L1PA7 LINE L1 4101 6184 -285 1976 132 61 3 chr4_random 6244385 6244680 -12607133 + AluSp SINE Alu 1 312 -1 9625 133 5 61 chr4_random 6244680 6244947 -12606866 + L1PA7 LINE L1 6184 6464 -5 4542 250 73 24 chr4_random 6245848 6246947 -12604866 + L1 LINE L1 2888 4126 -2020 185 0 40 0 chr4_random 6246947 6246972 -12604841 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4542 250 73 24 chr4_random 6246972 6247828 -12603985 + L1 LINE L1 4126 4939 -1207 933 129 0 0 chr4_random 6247829 6248000 -12603813 + (TA)n Simple_repeat Simple_repeat 1 171 0 1814 292 60 1 chr4_random 6248309 6248977 -12602836 - PRIMA41-int LTR ERV1 -1593 6163 5457 2575 310 34 35 chr4_random 6249077 6250304 -12601509 - PRIMA41-int LTR ERV1 -4770 2986 1738 5820 155 17 9 chr4_random 6250304 6251265 -12600548 + LTR5 LTR ERVK 2 969 0 2575 310 34 35 chr4_random 6251265 6251422 -12600391 - PRIMA41-int LTR ERV1 -6018 1738 1582 1495 254 2 2 chr4_random 6252240 6252650 -12599163 - L1MC4a LINE L1 -887 5259 4850 663 89 10 0 chr4_random 6252654 6252911 -12598902 + CER Satellite Satellite 1 259 -42 5392 262 60 16 chr4_random 6252911 6253223 -12598590 - L1M4 LINE L1 -1221 6344 6047 1905 164 3 7 chr4_random 6253223 6253528 -12598285 - AluSg SINE Alu -6 304 1 5392 262 60 16 chr4_random 6253528 6253880 -12597933 - L1M4 LINE L1 -1518 6047 5712 1674 221 64 12 chr4_random 6253880 6254287 -12597526 - MSTA LTR MaLR 0 428 1 7213 211 31 17 chr4_random 6254287 6255916 -12595897 - MSTA-int LTR MaLR 0 1651 1 1738 222 36 14 chr4_random 6255916 6256335 -12595478 - MSTA LTR MaLR 0 428 1 5392 262 60 16 chr4_random 6256335 6256702 -12595111 - L1M4 LINE L1 -1853 5712 5363 1914 148 3 0 chr4_random 6256702 6257015 -12594798 - AluSx SINE Alu 0 314 1 5392 262 60 16 chr4_random 6257015 6258902 -12592911 - L1M4 LINE L1 -2202 5363 3288 9074 101 4 0 chr4_random 6258916 6260219 -12591594 + L1P LINE L1 7 1314 -4832 1162 125 3 3 chr4_random 6260319 6265585 -12586228 + ALR/Alpha Satellite centromeric 1 5265 -32 1151 125 4 3 chr4_random 6265686 6273021 -12578792 - ALR/Alpha Satellite centromeric -1 7338 1 1106 169 5 2 chr4_random 6273140 6278477 -12573336 + ALR/Alpha Satellite centromeric 1 5349 -1 1105 163 1 11 chr4_random 6278581 6279657 -12572156 - ALR/Alpha Satellite centromeric 0 4730 3645 13884 38 7 0 chr4_random 6279657 6282124 -12569689 + L1PA3 LINE L1 3680 6152 -3 1105 163 1 11 chr4_random 6282124 6283359 -12568454 - ALR/Alpha Satellite centromeric -1085 3645 1 907 147 0 0 chr4_random 6283513 6283663 -12568150 + L1M1 LINE L1 2040 2189 -5376 1175 161 22 49 chr4_random 6283763 6283829 -12567984 + AluJo SINE Alu 77 143 -169 2446 66 7 0 chr4_random 6283829 6284134 -12567679 + AluY SINE Alu 1 307 -4 1175 161 22 49 chr4_random 6284134 6284290 -12567523 + AluJo SINE Alu 143 293 -19 6664 139 38 84 chr4_random 6284304 6284449 -12567364 - Tigger1 DNA MER2_type 0 2418 2268 185 0 40 0 chr4_random 6284449 6284474 -12567339 + (TTAA)n Simple_repeat Simple_repeat 2 27 0 6664 139 38 84 chr4_random 6284474 6284589 -12567224 - Tigger1 DNA MER2_type -150 2268 2149 3417 205 18 77 chr4_random 6284589 6285619 -12566194 - LTR5 LTR ERVK 0 969 1 6664 139 38 84 chr4_random 6285619 6286501 -12565312 - Tigger1 DNA MER2_type -269 2149 1357 1866 137 12 58 chr4_random 6286501 6286829 -12564984 - AluSq SINE Alu 0 313 1 6664 139 38 84 chr4_random 6286829 6287166 -12564647 - Tigger1 DNA MER2_type -1061 1357 1006 510 176 29 0 chr4_random 6287161 6287263 -12564550 - Tigger1 DNA MER2_type -1908 510 406 * 294 279 23 14 chr4_random 6288202 6288485 -12563328 - LSAU Satellite Satellite 0 498 142 696 205 0 0 chr4_random 6288537 6288775 -12563038 + GA-rich Low_complexity Low_complexity 1 238 0 216 260 0 0 chr4_random 6289871 6289921 -12561892 + CT-rich Low_complexity Low_complexity 1 50 0 1181 169 5 3 chr4_random 6291776 6302363 -12549450 - ALR/Alpha Satellite centromeric 0 10608 1 1725 50 0 0 chr4_random 6302363 6302582 -12549231 - L1P LINE L1 -1535 4611 4393 2913 37 3 0 chr4_random 6302582 6302974 -12548839 + L1PA3 LINE L1 5802 6195 0 1044 166 6 4 chr4_random 6302974 6304912 -12546901 - ALR/Alpha Satellite centromeric 0 1942 1 24594 52 3 0 chr4_random 6305013 6308131 -12543682 + L1P LINE L1 1528 4655 -1491 10585 194 62 12 chr4_random 6308122 6311036 -12540777 - L1M1 LINE L1 -4406 3159 17 * 648 125 0 19 chr4_random 6311047 6311151 -12540662 - L1PA16 LINE L1 -21 6145 6044 3656 172 26 9 chr4_random 6311156 6311837 -12539976 - L1PA16 LINE L1 -84 6082 5390 346 140 0 0 chr4_random 6311841 6311898 -12539915 + L1P LINE L1 5304 5360 -808 2430 70 0 0 chr4_random 6311900 6312200 -12539613 + AluY SINE Alu 1 300 -11 538 300 203 3 chr4_random 6312951 6313261 -12538552 + MLT1H1 LTR MaLR 32 405 -162 21 0 0 0 chr4_random 6313373 6313394 -12538419 + AT_rich Low_complexity Low_complexity 1 21 0 252 200 0 0 chr4_random 6313397 6313442 -12538371 + MLT1H1 LTR MaLR 546 590 0 1179 153 3 1 chr4_random 6313819 6325176 -12526637 + ALR/Alpha Satellite centromeric 1 11381 -2 7088 53 0 0 chr4_random 6325176 6326568 -12525245 + L1PA3 LINE L1 4767 6162 0 1186 152 1 0 chr4_random 6326579 6328752 -12523061 + ALR/Alpha Satellite centromeric 1 2175 -44 2864 47 0 0 chr4_random 6328752 6329095 -12522718 + L1PA3 LINE L1 3984 4326 -1820 7389 32 6 0 chr4_random 6329195 6330364 -12521449 + L1PA3 LINE L1 4995 6168 0 1116 173 5 2 chr4_random 6330385 6335822 -12515991 + ALR/Alpha Satellite centromeric 1 5452 -61 1132 163 2 1 chr4_random 6335923 6338026 -12513787 - ALR/Alpha Satellite centromeric 0 2105 1 8147 52 1 0 chr4_random 6338026 6339085 -12512728 - L1P LINE L1 -2156 3990 2931 3678 64 2 0 chr4_random 6339082 6339584 -12512229 + L1PA3 LINE L1 5665 6167 0 * 1012 172 7 3 chr4_random 6339585 6340596 -12511217 - ALR/Alpha Satellite centromeric 0 1015 1 9965 83 92 5 chr4_random 6340596 6342025 -12509788 - L1PA3 LINE L1 -4593 1553 1 30485 43 1 0 chr4_random 6342027 6346624 -12505189 + L1PA3 LINE L1 1557 6155 0 1023 170 4 3 chr4_random 6346627 6352415 -12499398 - ALR/Alpha Satellite centromeric -6 5794 1 1197 156 4 5 chr4_random 6352515 6358135 -12493678 - ALR/Alpha Satellite centromeric -6 5615 1 1367 59 0 0 chr4_random 6358135 6358305 -12493508 - AluY SINE Alu 0 311 142 1075 166 5 3 chr4_random 6358306 6364043 -12487770 - ALR/Alpha Satellite centromeric 0 5747 1 239 333 67 8 chr4_random 6364155 6364275 -12487538 - MIR3 SINE MIR -15 193 67 1102 219 128 27 chr4_random 6364772 6364957 -12486856 - L1MD2 LINE L1 -18 6341 6176 180 111 0 0 chr4_random 6364957 6364984 -12486829 + (TG)n Simple_repeat Simple_repeat 2 28 0 1102 219 128 27 chr4_random 6364984 6365204 -12486609 - L1MD2 LINE L1 -183 6176 5895 2401 38 3 0 chr4_random 6366325 6366617 -12485196 - L1PA3 LINE L1 -267 5888 5596 515 62 0 0 chr4_random 6366627 6366692 -12485121 + L1P LINE L1 4587 4651 -1495 446 215 5 0 chr4_random 6367113 6367341 -12484472 + GA-rich Low_complexity Low_complexity 1 229 0 669 190 0 0 chr4_random 6367399 6367578 -12484235 + GA-rich Low_complexity Low_complexity 2 180 0 532 185 0 22 chr4_random 6367617 6367801 -12484012 + GA-rich Low_complexity Low_complexity 1 180 0 480 182 0 0 chr4_random 6367824 6367956 -12483857 + GA-rich Low_complexity Low_complexity 1 132 0 1057 171 5 6 chr4_random 6368060 6372650 -12479163 - ALR/Alpha Satellite centromeric 0 4588 1 1116 172 4 3 chr4_random 6372664 6374528 -12477285 - ALR/Alpha Satellite centromeric -7 1867 1 13247 56 4 0 chr4_random 6374542 6376249 -12475564 + L1P LINE L1 3577 5290 -856 2337 36 0 0 chr4_random 6376349 6376630 -12475183 + L1PA3 LINE L1 5875 6155 0 1160 154 3 2 chr4_random 6376635 6377162 -12474651 + ALR/Alpha Satellite centromeric 1 526 -13187 6949 46 9 20 chr4_random 6377162 6378558 -12473255 + L1PA3 LINE L1 4767 6152 -3 1160 154 3 2 chr4_random 6378558 6390338 -12461475 + ALR/Alpha Satellite centromeric 526 13710 -3 214 329 161 15 chr4_random 6390932 6391069 -12460744 + L2 LINE L2 3115 3271 -1 201 306 167 0 chr4_random 6391153 6391225 -12460588 - L2 LINE L2 0 3313 3230 200 267 0 0 chr4_random 6391346 6391391 -12460422 - L2 LINE L2 -8 3305 3261 1957 194 98 54 chr4_random 6391934 6392474 -12459339 - LTR6A LTR ERV1 0 564 1 211 274 55 0 chr4_random 6392690 6392763 -12459050 - L2 LINE L2 -5 3308 3232 2309 216 21 0 chr4_random 6393034 6393556 -12458257 + L1PB4 LINE L1 5620 6152 -4 279 220 0 22 chr4_random 6394681 6394772 -12457041 - L2 LINE L2 -1230 2084 1996 306 212 0 0 chr4_random 6394834 6394900 -12456913 - MER103 DNA DNA -75 91 26 267 114 0 0 chr4_random 6394920 6394964 -12456849 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr4_random 6395552 6395573 -12456240 + AT_rich Low_complexity Low_complexity 1 21 0 10414 208 23 3 chr4_random 6395884 6398156 -12453657 + L1P LINE L1 3016 5331 -815 5193 173 42 61 chr4_random 6398153 6399254 -12452559 + L1M1 LINE L1 1477 2556 -5009 * 445 316 6 0 chr4_random 6399594 6399768 -12452045 + CT-rich Low_complexity Low_complexity 1 175 0 229 296 17 0 chr4_random 6399772 6399887 -12451926 + (TG)n Simple_repeat Simple_repeat 2 118 0 936 99 0 0 chr4_random 6400230 6400361 -12451452 - L1P LINE L1 -6000 146 16 1215 157 5 0 chr4_random 6400361 6407751 -12444062 + ALR/Alpha Satellite centromeric 1 7427 0 1134 153 2 1 chr4_random 6407859 6411707 -12440106 + ALR/Alpha Satellite centromeric 1 3850 -47 1162 159 1 0 chr4_random 6411816 6416384 -12435429 + ALR/Alpha Satellite centromeric 1 4571 -38 1321 135 4 3 chr4_random 6416500 6425655 -12426158 + ALR/Alpha Satellite centromeric 1 9161 -52 1112 166 6 1 chr4_random 6425755 6428678 -12423135 - ALR/Alpha Satellite centromeric 0 2938 1 1968 206 100 34 chr4_random 6429188 6429717 -12422096 - LTR6A LTR ERV1 0 564 1 310 191 59 0 chr4_random 6429932 6430000 -12421813 - L2 LINE L2 0 3272 3201 2389 214 19 0 chr4_random 6430316 6430839 -12420974 + L1PB4 LINE L1 5620 6152 -4 242 242 0 22 chr4_random 6431973 6432064 -12419749 - L2 LINE L2 -1230 2084 1996 314 250 0 0 chr4_random 6432124 6432204 -12419609 - MER103 DNA DNA -75 91 12 10453 202 25 6 chr4_random 6433157 6435428 -12416385 + L1P LINE L1 3016 5331 -815 2649 215 43 0 chr4_random 6435425 6435931 -12415882 + L1M1 LINE L1 1477 2004 -5561 * 1159 161 0 3 chr4_random 6436032 6438459 -12413354 + ALR/Alpha Satellite centromeric 1 2420 -1 266 197 26 0 chr4_random 6638462 6638538 -12213275 + CT-rich Low_complexity Low_complexity 4 81 0 582 217 17 0 chr4_random 6638538 6638658 -12213155 - AluSg/x SINE Alu 0 312 191 304 0 0 82 chr4_random 6638727 6638788 -12213025 + (TTCC)n Simple_repeat Simple_repeat 2 57 0 313 49 0 0 chr4_random 6638792 6638833 -12212980 + AluSg/x SINE Alu 196 236 -64 1157 144 6 17 chr4_random 6638837 6639018 -12212795 - AluSx SINE Alu -133 179 1 26 0 0 0 chr4_random 6639067 6639093 -12212720 + AT_rich Low_complexity Low_complexity 1 26 0 896 268 29 4 chr4_random 6639642 6639888 -12211925 - LTR40b LTR ERVL -181 281 30 1360 107 0 0 chr4_random 6640087 6640264 -12211549 + AluSg SINE Alu 1 177 -133 22 35 0 0 chr4_random 6640544 6640573 -12211240 + AT_rich Low_complexity Low_complexity 1 29 0 381 304 63 76 chr4_random 6640788 6640946 -12210867 + MLT1E LTR MaLR 203 358 -235 1177 201 78 39 chr4_random 6642243 6642527 -12209286 + AluJo SINE Alu 2 296 -6 21 36 0 0 chr4_random 6644006 6644034 -12207779 + AT_rich Low_complexity Low_complexity 1 28 0 2444 58 3 3 chr4_random 6644131 6644440 -12207373 - AluY SINE Alu -2 309 1 335 186 0 47 chr4_random 6644544 6644630 -12207183 - L1MCa LINE L1 -4359 2067 1986 323 267 0 11 chr4_random 6644568 6644658 -12207155 + L1MC4 LINE L1 6615 6703 -1339 * 25 31 0 0 chr4_random 6644808 6644840 -12206973 + AT_rich Low_complexity Low_complexity 1 32 0 2564 186 47 6 chr4_random 6645378 6645873 -12205940 + MLT2B2 LTR ERVL 1 515 0 1760 118 16 77 chr4_random 6647024 6647337 -12204476 + AluY SINE Alu 1 294 -17 23 0 0 0 chr4_random 6647609 6647632 -12204181 + AT_rich Low_complexity Low_complexity 1 23 0 2155 105 0 3 chr4_random 6647830 6648124 -12203689 + AluSg SINE Alu 1 293 -17 23 54 0 0 chr4_random 6648562 6648599 -12203214 + AT_rich Low_complexity Low_complexity 1 37 0 12115 110 17 13 chr4_random 6648599 6651298 -12200515 - L1PA8A LINE L1 -9 6122 3421 616 278 6 11 chr4_random 6651663 6651843 -12199970 - L1MC4 LINE L1 -1036 7006 6828 24 67 0 0 chr4_random 6652088 6652133 -12199680 + AT_rich Low_complexity Low_complexity 1 45 0 2115 110 0 3 chr4_random 6652207 6652521 -12199292 - AluY SINE Alu 0 313 1 28 29 0 0 chr4_random 6652755 6652790 -12199023 + AT_rich Low_complexity Low_complexity 1 35 0 212 0 36 0 chr4_random 6653316 6653344 -12198469 + (CA)n Simple_repeat Simple_repeat 2 30 0 3627 118 59 40 chr4_random 6653492 6654453 -12197360 + MER11A LTR ERVK 1 1071 0 2777 186 74 41 chr4_random 6654506 6655182 -12196631 + LTR8A LTR ERV1 30 727 0 2099 130 0 0 chr4_random 6655961 6656262 -12195551 - AluSg SINE Alu -8 302 2 362 324 165 10 chr4_random 6656677 6657082 -12194731 - MLT1J LTR MaLR -43 468 1 27 73 0 0 chr4_random 6657128 6657183 -12194630 + AT_rich Low_complexity Low_complexity 1 55 0 210 255 0 0 chr4_random 6657508 6657555 -12194258 + (AATAG)n Simple_repeat Simple_repeat 2 48 0 345 159 32 0 chr4_random 6657559 6657622 -12194191 + THE1C LTR MaLR 303 367 -8 300 27 0 0 chr4_random 6657644 6657681 -12194132 + (CA)n Simple_repeat Simple_repeat 1 37 0 240 185 31 77 chr4_random 6658154 6658219 -12193594 + tRNA-Met-e tRNA tRNA 1 62 -13 822 237 21 5 chr4_random 6658959 6659153 -12192660 + MER72 LTR ERV1 1 197 -525 2061 207 14 57 chr4_random 6659215 6659509 -12192304 + MER72 LTR ERV1 232 537 -185 1876 168 66 57 chr4_random 6659509 6659931 -12191882 + MSTB LTR MaLR 1 426 0 2061 207 14 57 chr4_random 6659931 6660075 -12191738 + MER72 LTR ERV1 537 647 -75 1987 162 9 17 chr4_random 6660075 6660421 -12191392 - MER61A LTR ERV1 0 343 1 2061 207 14 57 chr4_random 6660421 6660494 -12191319 + MER72 LTR ERV1 647 722 0 874 208 5 5 chr4_random 6660601 6660808 -12191005 - AluSq SINE Alu 0 313 107 5679 141 7 45 chr4_random 6660908 6661966 -12189847 - L1P3 LINE L1 -2951 3510 2494 * 7172 123 28 14 chr4_random 6661946 6663071 -12188742 - L1P3 LINE L1 -4734 1141 2 25 31 0 0 chr4_random 6663392 6663424 -12188389 + AT_rich Low_complexity Low_complexity 1 32 0 218 140 0 20 chr4_random 6664534 6664584 -12187229 + (TA)n Simple_repeat Simple_repeat 1 49 0 545 297 19 13 chr4_random 6664868 6665023 -12186790 - MLT1H LTR MaLR -329 220 65 7790 16 0 0 chr4_random 6665434 6666496 -12185317 - L1PA2 LINE L1 -6 6149 5088 285 179 74 53 chr4_random 6666652 6666747 -12185066 - L1MC4 LINE L1 -21 8021 7925 1013 296 113 39 chr4_random 6666855 6667814 -12183999 - L1MC4 LINE L1 -219 7823 6794 309 89 0 0 chr4_random 6667877 6667922 -12183891 + (CA)n Simple_repeat Simple_repeat 2 46 0 2022 134 0 3 chr4_random 6668009 6668300 -12183513 - AluSg SINE Alu -20 290 1 23 0 0 0 chr4_random 6668587 6668610 -12183203 + AT_rich Low_complexity Low_complexity 1 23 0 1410 266 127 12 chr4_random 6668693 6669260 -12182553 - L1MC4 LINE L1 -141 7901 7270 25 0 0 0 chr4_random 6670668 6670693 -12181120 + AT_rich Low_complexity Low_complexity 1 25 0 1060 260 4 0 chr4_random 6671057 6671299 -12180514 + MER89 LTR ERV1 317 559 0 369 0 0 0 chr4_random 6671678 6671719 -12180094 + (TA)n Simple_repeat Simple_repeat 2 42 0 899 220 73 5 chr4_random 6671962 6672153 -12179660 + AluJo SINE Alu 1 204 -108 2158 175 11 45 chr4_random 6672491 6672932 -12178881 - MSTB LTR MaLR 0 426 1 2067 172 22 0 chr4_random 6672954 6673309 -12178504 + THE1B LTR MaLR 2 364 0 24 77 0 0 chr4_random 6674086 6674138 -12177675 + AT_rich Low_complexity Low_complexity 1 52 0 237 174 0 22 chr4_random 6674384 6674430 -12177383 + MIR SINE MIR 100 144 -118 348 64 0 0 chr4_random 6674582 6674629 -12177184 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 62 0 0 chr4_random 6677119 6677167 -12174646 + AT_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr4_random 6677774 6677803 -12174010 + AT_rich Low_complexity Low_complexity 1 29 0 263 372 49 49 chr4_random 6677907 6678133 -12173680 - MIR SINE MIR -8 254 29 28 0 0 0 chr4_random 6678318 6678346 -12173467 + AT_rich Low_complexity Low_complexity 1 28 0 28 71 0 0 chr4_random 6678885 6678941 -12172872 + AT_rich Low_complexity Low_complexity 1 56 0 233 380 68 19 chr4_random 6680446 6680651 -12171162 + LTR16C LTR ERVL 160 374 -117 648 204 78 26 chr4_random 6680970 6681161 -12170652 - MER2 DNA MER2_type -144 201 1 2086 183 17 15 chr4_random 6681623 6682068 -12169745 + L1MA4 LINE L1 5824 6272 -28 1736 176 64 14 chr4_random 6682068 6682425 -12169388 + THE1C LTR MaLR 1 375 0 2086 183 17 15 chr4_random 6682425 6682443 -12169370 + L1MA4 LINE L1 6272 6288 -12 1615 187 78 36 chr4_random 6682970 6683381 -12168432 - MSTA LTR MaLR 0 428 1 7964 205 17 41 chr4_random 6683381 6684870 -12166943 - THE1C-int LTR MaLR 0 1651 205 1984 164 24 32 chr4_random 6684870 6685248 -12166565 - THE1C LTR MaLR 0 375 1 7964 205 17 41 chr4_random 6685248 6685448 -12166365 - THE1C-int LTR MaLR -1446 205 2 1499 171 196 19 chr4_random 6685450 6685813 -12166000 - MSTA LTR MaLR -1 427 1 279 409 43 16 chr4_random 6685944 6686247 -12165566 - L2 LINE L2 -337 2977 2667 369 315 179 14 chr4_random 6686252 6686604 -12165209 - L2 LINE L2 -993 2321 1912 1637 209 0 0 chr4_random 6686605 6686916 -12164897 + AluJb SINE Alu 1 311 -1 23 78 0 0 chr4_random 6687640 6687691 -12164122 + AT_rich Low_complexity Low_complexity 1 51 0 1417 194 43 17 chr4_random 6688922 6689221 -12162592 + AluJo SINE Alu 1 307 -5 26 30 0 0 chr4_random 6689412 6689445 -12162368 + AT_rich Low_complexity Low_complexity 1 33 0 1986 127 0 3 chr4_random 6689852 6690144 -12161669 + AluSq SINE Alu 1 291 -22 516 264 94 34 chr4_random 6690409 6690791 -12161022 + L1ME2 LINE L1 731 1135 -5261 256 266 39 39 chr4_random 6691031 6691159 -12160654 + L1ME2 LINE L1 4816 4943 -1272 * 2399 257 66 14 chr4_random 6691158 6692105 -12159708 + L1ME2 LINE L1 5183 6180 -53 23 78 0 0 chr4_random 6692177 6692228 -12159585 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr4_random 6692584 6692607 -12159206 + AT_rich Low_complexity Low_complexity 1 23 0 1802 97 14 21 chr4_random 6692631 6692920 -12158893 - L1PB2 LINE L1 -7 6144 5858 1617 304 52 31 chr4_random 6692920 6693305 -12158508 + L1P5 LINE L1 5273 5665 -489 27 49 0 0 chr4_random 6695141 6695182 -12156631 + AT_rich Low_complexity Low_complexity 1 41 0 246 264 0 57 chr4_random 6695432 6695538 -12156275 + L1MEd LINE L1 55 154 -5965 275 347 26 89 chr4_random 6695845 6696228 -12155585 + MER115 DNA AcHobo 95 453 -240 615 223 78 0 chr4_random 6696630 6696823 -12154990 + MER58B DNA MER1_type 48 255 -86 1322 256 75 7 chr4_random 6696882 6697316 -12154497 + MER110A LTR ERV1 41 486 0 526 200 0 0 chr4_random 6697323 6697413 -12154400 + MER58B DNA MER1_type 252 341 0 1520 195 25 57 chr4_random 6697866 6698318 -12153495 - MER89 LTR ERV1 0 559 24 213 132 0 0 chr4_random 6699038 6699076 -12152737 + (A)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr4_random 6699525 6699550 -12152263 + AT_rich Low_complexity Low_complexity 1 25 0 192 40 0 0 chr4_random 6699994 6700019 -12151794 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2340 119 13 21 chr4_random 6700645 6701023 -12150790 - THE1C LTR MaLR 0 375 1 24 0 0 0 chr4_random 6701185 6701209 -12150604 + AT_rich Low_complexity Low_complexity 1 24 0 297 218 0 0 chr4_random 6701492 6701570 -12150243 + (TA)n Simple_repeat Simple_repeat 1 78 0 2457 236 68 7 chr4_random 6701596 6702211 -12149602 + MER82 DNA MER2_type 1 653 0 27 81 0 0 chr4_random 6702437 6702499 -12149314 + AT_rich Low_complexity Low_complexity 1 62 0 931 283 35 38 chr4_random 6702743 6703089 -12148724 + L1MDa LINE L1 289 633 -5907 767 116 14 14 chr4_random 6703135 6703281 -12148532 + (GAA)n Simple_repeat Simple_repeat 3 148 0 1856 146 7 0 chr4_random 6703285 6703588 -12148225 + AluSg SINE Alu 1 305 0 261 0 0 0 chr4_random 6703612 6703641 -12148172 + (TAA)n Simple_repeat Simple_repeat 2 30 0 2347 224 103 38 chr4_random 6703669 6704626 -12147187 + L1MD1 LINE L1 4967 5992 -250 892 230 73 61 chr4_random 6704768 6705153 -12146660 + MLT1E LTR MaLR 94 593 0 1694 233 14 3 chr4_random 6705157 6705518 -12146295 - MLT1A1 LTR MaLR 0 365 1 30 45 0 0 chr4_random 6707217 6707261 -12144552 + AT_rich Low_complexity Low_complexity 1 44 0 721 125 0 0 chr4_random 6707261 6707373 -12144440 - L1PB1 LINE L1 -1 6150 6039 22 0 0 0 chr4_random 6707391 6707413 -12144400 + AT_rich Low_complexity Low_complexity 1 22 0 1058 295 91 23 chr4_random 6707585 6708103 -12143710 - MLT1H1 LTR MaLR 0 555 3 27 62 0 0 chr4_random 6708362 6708410 -12143403 + AT_rich Low_complexity Low_complexity 1 48 0 22 0 0 0 chr4_random 6708500 6708522 -12143291 + AT_rich Low_complexity Low_complexity 1 22 0 234 250 19 0 chr4_random 6709225 6709277 -12142536 - MIR3 SINE MIR -30 178 126 384 22 0 0 chr4_random 6709977 6709985 -12141828 + (TG)n Simple_repeat Simple_repeat 1 53 0 384 22 0 0 chr4_random 6709985 6710030 -12141783 + (TG)n Simple_repeat Simple_repeat 1 45 0 208 322 102 45 chr4_random 6710114 6710291 -12141522 + MIR SINE MIR 2 188 -74 260 371 43 7 chr4_random 6710857 6710997 -12140816 - L2 LINE L2 0 3313 3169 4656 140 76 77 chr4_random 6711270 6712857 -12138956 - pTR5 LTR ERV1 0 2438 68 30 0 0 0 chr4_random 6713481 6713511 -12138302 + AT_rich Low_complexity Low_complexity 1 30 0 1192 233 30 81 chr4_random 6713766 6714200 -12137613 - MER39 LTR ERV1 -1 706 295 37 62 0 0 chr4_random 6715358 6715423 -12136390 + AT_rich Low_complexity Low_complexity 1 65 0 434 137 38 44 chr4_random 6715467 6715871 -12135942 + (CATATA)n Simple_repeat Simple_repeat 1 401 0 24 0 0 0 chr4_random 6716446 6716470 -12135343 + AT_rich Low_complexity Low_complexity 1 24 0 3538 238 45 67 chr4_random 6716681 6718122 -12133691 + L1M4 LINE L1 3884 5293 -853 224 0 0 61 chr4_random 6718456 6718489 -12133324 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1882 117 3 43 chr4_random 6718683 6719014 -12132799 - AluSg SINE Alu 0 310 10 235 213 0 0 chr4_random 6719024 6719071 -12132742 + GA-rich Low_complexity Low_complexity 1 47 0 845 95 27 7 chr4_random 6719074 6719221 -12132592 + (GGAA)n Simple_repeat Simple_repeat 3 152 0 243 343 0 0 chr4_random 6719670 6719740 -12132073 - L2 LINE L2 -17 3296 3227 418 308 53 68 chr4_random 6723287 6723553 -12128260 + L2 LINE L2 3047 3308 -5 227 178 0 22 chr4_random 6723669 6723725 -12128088 + GA-rich Low_complexity Low_complexity 1 54 0 25 35 0 52 chr4_random 6724642 6724700 -12127113 + AT_rich Low_complexity Low_complexity 1 55 0 1924 125 3 26 chr4_random 6724872 6725198 -12126615 - AluSx SINE Alu 0 312 1 1103 252 88 53 chr4_random 6725219 6725707 -12126106 + MLT1D LTR MaLR 1 505 0 24 103 0 0 chr4_random 6725937 6726024 -12125789 + AT_rich Low_complexity Low_complexity 1 87 0 1706 244 101 78 chr4_random 6726187 6726819 -12124994 + MLT1E1 LTR MaLR 1 647 -7 4680 224 34 1 chr4_random 6726884 6727826 -12123987 - HERVL-C2 LTR ERVL -3328 2436 1464 498 93 93 0 chr4_random 6727826 6727901 -12123912 - MSTC LTR MaLR -346 82 1 261 232 37 24 chr4_random 6727903 6727985 -12123828 - HERVL-C2 LTR ERVL -5569 85 3 1152 179 12 135 chr4_random 6727993 6728334 -12123479 - MLT2C2 LTR ERVL -6 458 160 21 36 0 0 chr4_random 6728736 6728764 -12123049 + AT_rich Low_complexity Low_complexity 1 28 0 2383 191 21 48 chr4_random 6729358 6729881 -12121932 - MER67D LTR ERV1 -5 509 1 183 42 0 0 chr4_random 6730070 6730094 -12121719 + (CTA)n Simple_repeat Simple_repeat 3 26 0 4222 125 3 2 chr4_random 6730452 6731086 -12120727 + MER41B LTR ERV1 1 635 0 3185 176 67 3 chr4_random 6731160 6731769 -12120044 - MER39B LTR ERV1 0 653 6 315 373 66 13 chr4_random 6731918 6732146 -12119667 - MIR SINE MIR -1 261 22 21 0 0 0 chr4_random 6732193 6732214 -12119599 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr4_random 6732695 6732723 -12119090 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr4_random 6733352 6733377 -12118436 + AT_rich Low_complexity Low_complexity 1 25 0 2031 142 0 7 chr4_random 6734113 6734423 -12117390 + AluSx SINE Alu 1 308 -4 279 148 33 33 chr4_random 6734625 6734686 -12117127 + LTR8 LTR ERV1 327 387 -304 1916 201 49 51 chr4_random 6734732 6735199 -12116614 + MLT1D LTR MaLR 40 505 0 539 373 93 27 chr4_random 6735459 6736091 -12115722 - L2 LINE L2 -426 2888 2215 1076 290 263 14 chr4_random 6736113 6736737 -12115076 - L2 LINE L2 -504 2810 2032 237 318 78 23 chr4_random 6736875 6737004 -12114809 + L2 LINE L2 2398 2533 -781 2246 93 7 3 chr4_random 6737243 6737553 -12114260 - AluSq SINE Alu -2 311 1 21 0 0 0 chr4_random 6738541 6738562 -12113251 + AT_rich Low_complexity Low_complexity 1 21 0 897 140 30 18 chr4_random 6739022 6739186 -12112627 - LTR49 LTR ERV1 -3 592 427 240 35 0 0 chr4_random 6739186 6739215 -12112598 + (CA)n Simple_repeat Simple_repeat 2 30 0 283 237 11 0 chr4_random 6739217 6739394 -12112419 + (TA)n Simple_repeat Simple_repeat 2 180 0 2798 133 9 0 chr4_random 6739423 6739852 -12111961 - LTR49 LTR ERV1 -162 433 1 1803 330 51 72 chr4_random 6741084 6743492 -12108321 - LTR49-int LTR ERV1 -67 7055 4699 464 345 47 34 chr4_random 6743887 6744333 -12107480 - LTR49-int LTR ERV1 -2811 4311 3860 4160 164 17 4 chr4_random 6745107 6745809 -12106004 + MER50 LTR ERV1 1 711 -23 21 0 0 0 chr4_random 6745908 6745929 -12105884 + AT_rich Low_complexity Low_complexity 1 21 0 702 338 193 13 chr4_random 6745929 6746458 -12105355 + L2 LINE L2 1020 1643 -1671 298 173 19 0 chr4_random 6746478 6746530 -12105283 - LTR49 LTR ERV1 0 595 543 2443 147 53 32 chr4_random 6746641 6746887 -12104926 - LTR49 LTR ERV1 -110 485 223 2073 103 3 44 chr4_random 6746887 6747206 -12104607 - AluSg1 SINE Alu -3 306 1 2443 147 53 32 chr4_random 6747206 6747428 -12104385 - LTR49 LTR ERV1 -372 223 7 547 313 122 7 chr4_random 6747439 6747727 -12104086 + L2 LINE L2 2308 2628 -686 1500 145 4 0 chr4_random 6747727 6747955 -12103858 - MER4E LTR ERV1 0 779 551 205 370 58 19 chr4_random 6747992 6748146 -12103667 - L2 LINE L2 -575 2739 2580 3966 144 65 36 chr4_random 6748571 6748819 -12102994 - MER4D LTR ERV1 -28 875 636 2524 56 0 3 chr4_random 6748819 6749123 -12102690 + AluY SINE Alu 1 303 -8 3966 144 65 36 chr4_random 6749123 6749369 -12102444 - MER4D LTR ERV1 -267 636 399 3282 161 18 82 chr4_random 6749369 6750061 -12101752 - LTR8 LTR ERV1 0 691 48 2136 91 10 17 chr4_random 6750061 6750359 -12101454 - AluSc SINE Alu -13 296 1 3282 161 18 82 chr4_random 6750359 6750405 -12101408 - LTR8 LTR ERV1 -643 48 1 3966 144 65 36 chr4_random 6750405 6750678 -12101135 - MER4D LTR ERV1 -504 399 85 271 321 157 52 chr4_random 6750714 6751036 -12100777 + L2 LINE L2 2741 3126 -187 243 0 0 0 chr4_random 6751036 6751063 -12100750 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 271 321 157 52 chr4_random 6751063 6751135 -12100678 + L2 LINE L2 3126 3189 -124 262 183 43 139 chr4_random 6751167 6751282 -12100531 - MER101B LTR ERV1 0 570 467 544 333 32 0 chr4_random 6751641 6751860 -12099953 - Charlie1a DNA MER1_type -1228 227 2 1423 196 20 119 chr4_random 6751930 6752334 -12099479 - MLT1A1 LTR MaLR -1 364 1 1144 85 32 113 chr4_random 6752649 6752896 -12098917 + L1MA3 LINE L1 6076 6302 -3 29 47 0 0 chr4_random 6753027 6753070 -12098743 + AT_rich Low_complexity Low_complexity 1 43 0 188 235 15 0 chr4_random 6753217 6753285 -12098528 + (TA)n Simple_repeat Simple_repeat 2 70 0 25 31 0 0 chr4_random 6753285 6753317 -12098496 + AT_rich Low_complexity Low_complexity 1 32 0 311 315 103 6 chr4_random 6753668 6753979 -12097834 - Charlie7 DNA MER1_type -273 2339 1999 25 0 0 0 chr4_random 6754120 6754145 -12097668 + AT_rich Low_complexity Low_complexity 1 25 0 1989 151 0 3 chr4_random 6754244 6754556 -12097257 + AluSx SINE Alu 2 312 0 1249 62 6 6 chr4_random 6754556 6754603 -12097210 + (GAAA)n Simple_repeat Simple_repeat 1 224 0 1249 62 6 6 chr4_random 6754603 6754780 -12097033 + (GAAA)n Simple_repeat Simple_repeat 4 180 0 25 31 0 0 chr4_random 6755098 6755130 -12096683 + AT_rich Low_complexity Low_complexity 1 32 0 483 272 16 33 chr4_random 6755437 6755621 -12096192 - Charlie7 DNA MER1_type -922 1690 1510 548 284 117 47 chr4_random 6756016 6756333 -12095480 + HAL1 LINE L1 133 471 -2036 517 354 87 30 chr4_random 6756751 6757178 -12094635 + MLT1J LTR MaLR 5 455 -56 574 278 18 18 chr4_random 6757372 6757541 -12094272 - L1MD3 LINE L1 -1115 6880 6712 1209 274 24 75 chr4_random 6757547 6758094 -12093719 + MER34 LTR ERV1 3 521 -21 236 209 77 66 chr4_random 6758097 6758188 -12093625 - L1MC4 LINE L1 -1279 6763 6672 3606 293 56 38 chr4_random 6758635 6761874 -12089939 - L1PBa LINE L1 -3456 3406 40 39 0 0 0 chr4_random 6762142 6762181 -12089632 + AT_rich Low_complexity Low_complexity 1 39 0 345 293 83 35 chr4_random 6762419 6762767 -12089046 + HAL1b LINE L1 566 930 -418 344 297 59 0 chr4_random 6762981 6763082 -12088731 + MSTC LTR MaLR 1 107 -321 271 167 133 0 chr4_random 6763128 6763188 -12088625 + MSTD LTR MaLR 329 396 0 571 241 49 37 chr4_random 6763193 6763355 -12088458 + MSTD-int LTR MaLR 62 225 -1510 5527 212 27 23 chr4_random 6763531 6764027 -12087786 - L1MCa LINE L1 -5072 1354 862 186 43 0 0 chr4_random 6764027 6764050 -12087763 + (TG)n Simple_repeat Simple_repeat 2 24 0 5527 212 27 23 chr4_random 6764050 6764866 -12086947 - L1MCa LINE L1 -5564 862 36 242 327 71 26 chr4_random 6764910 6765023 -12086790 - L2 LINE L2 -21 3292 3175 4669 234 23 18 chr4_random 6765392 6767080 -12084733 - L1PA15-16 LINE L1 -3275 4309 2614 537 337 53 26 chr4_random 6767449 6767826 -12083987 - L1PA15-16 LINE L1 -7188 393 7 268 250 0 0 chr4_random 6768916 6768984 -12082829 - MER4-int LTR ERV1 -5419 1179 1112 458 239 8 0 chr4_random 6769017 6769151 -12082662 + (TATATG)n Simple_repeat Simple_repeat 4 138 0 311 309 85 35 chr4_random 6769317 6769518 -12082295 - LTR16C LTR ERVL -9 482 272 553 247 22 16 chr4_random 6769938 6770120 -12081693 + LTR43 LTR ERV1 154 336 -266 829 236 68 71 chr4_random 6770182 6770383 -12081430 + LTR40a LTR ERVL 199 399 -120 2216 152 8 16 chr4_random 6770383 6770759 -12081054 - THE1C LTR MaLR 0 375 3 9216 142 41 10 chr4_random 6770761 6772293 -12079520 - THE1C-int LTR MaLR 0 1580 1 2355 116 24 19 chr4_random 6772293 6772664 -12079149 - THE1C LTR MaLR 0 375 3 829 236 68 71 chr4_random 6772664 6772780 -12079033 + LTR40a LTR ERVL 398 519 0 277 130 65 51 chr4_random 6773493 6773631 -12078182 + (TA)n Simple_repeat Simple_repeat 2 141 0 2044 56 0 8 chr4_random 6773842 6774091 -12077722 + AluY SINE Alu 1 247 -64 322 0 0 0 chr4_random 6774091 6774127 -12077686 - THE1B LTR MaLR -326 38 3 337 111 37 0 chr4_random 6774131 6774185 -12077628 + AluY SINE Alu 248 303 -5 1854 143 11 0 chr4_random 6774413 6774686 -12077127 + AluSx SINE Alu 1 276 -36 1332 308 77 23 chr4_random 6774733 6775493 -12076320 + L1M2a LINE L1 7 958 -6210 689 258 87 35 chr4_random 6775551 6775780 -12076033 + L1M2a LINE L1 1744 1984 -5184 * 5163 174 31 19 chr4_random 6775776 6777185 -12074628 + L1MA6 LINE L1 4861 6298 -2 2010 145 3 6 chr4_random 6777195 6777481 -12074332 + AluSx SINE Alu 1 287 -25 489 17 0 0 chr4_random 6777481 6777539 -12074274 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 2010 145 3 6 chr4_random 6777539 6777563 -12074250 + AluSx SINE Alu 287 310 -2 198 350 34 17 chr4_random 6779127 6779244 -12072569 - L2 LINE L2 -4 3309 3191 2091 136 25 35 chr4_random 6780833 6781201 -12070612 + THE1B LTR MaLR 1 364 0 363 125 0 0 chr4_random 6781201 6781257 -12070556 + THE1B-int LTR MaLR 1 56 -1524 * 7557 125 1 10 chr4_random 6781254 6782355 -12069458 + THE1B-int LTR MaLR 489 1579 -1 2197 128 19 25 chr4_random 6782355 6782721 -12069092 + THE1B LTR MaLR 1 364 0 213 333 58 29 chr4_random 6782972 6783110 -12068703 - MIR3 SINE MIR -48 160 19 254 167 0 0 chr4_random 6783772 6783808 -12068005 + LTR16A1 LTR ERVL 410 445 -12 186 71 0 0 chr4_random 6783916 6783944 -12067869 + (TTA)n Simple_repeat Simple_repeat 3 30 0 1481 209 84 29 chr4_random 6784118 6784462 -12067351 - MLT1A1 LTR MaLR -2 363 1 183 318 0 0 chr4_random 6784591 6784635 -12067178 + L2 LINE L2 3222 3265 -7 195 368 0 0 chr4_random 6784849 6784925 -12066888 - L2 LINE L2 -3 3269 3194 23 0 0 0 chr4_random 6785367 6785390 -12066423 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr4_random 6787126 6787159 -12064654 + AT_rich Low_complexity Low_complexity 1 33 0 687 255 33 11 chr4_random 6787287 6787471 -12064342 + MER5A DNA MER1_type 2 189 0 237 198 151 38 chr4_random 6787830 6787936 -12063877 + L1MA5A LINE L1 6050 6167 -130 374 210 8 25 chr4_random 6787937 6788056 -12063757 + L1MA3 LINE L1 6189 6305 0 1627 175 13 58 chr4_random 6788178 6788555 -12063258 - MER46B DNA MER2_type 0 236 2 1410 236 13 3 chr4_random 6789111 6789420 -12062393 - AluJo SINE Alu 0 312 1 1922 141 45 45 chr4_random 6789541 6789730 -12062083 - THE1C LTR MaLR 0 375 184 2392 100 0 0 chr4_random 6789730 6790041 -12061772 + AluY SINE Alu 1 311 0 1922 141 45 45 chr4_random 6790041 6790226 -12061587 - THE1C LTR MaLR -190 185 1 217 204 0 0 chr4_random 6791554 6791568 -12060245 + (CATATA)n Simple_repeat Simple_repeat 6 19 -30 1864 140 0 33 chr4_random 6791568 6791868 -12059945 + AluSx SINE Alu 1 290 -22 217 204 0 0 chr4_random 6791868 6791897 -12059916 + (CATATA)n Simple_repeat Simple_repeat 18 49 0 23 0 0 0 chr4_random 6792376 6792399 -12059414 + AT_rich Low_complexity Low_complexity 1 23 0 981 144 12 6 chr4_random 6792909 6793069 -12058744 + AluSg/x SINE Alu 141 301 -11 822 208 25 0 chr4_random 6793237 6793396 -12058417 + MER6 DNA MER2_type 361 523 -342 3417 150 12 37 chr4_random 6793400 6793634 -12058179 - L1PA16 LINE L1 -8 6158 5920 2382 54 0 17 chr4_random 6793634 6793961 -12057852 - AluY SINE Alu 0 311 1 3417 150 12 37 chr4_random 6793961 6794374 -12057439 - L1PA16 LINE L1 -246 5920 5527 979 176 40 30 chr4_random 6794916 6795115 -12056698 + MER2 DNA MER2_type 1 201 -144 562 307 21 50 chr4_random 6795437 6795720 -12056093 + LTR16B LTR ERVL 147 421 -43 2082 150 16 22 chr4_random 6795746 6796112 -12055701 - THE1B LTR MaLR 0 364 1 27 0 0 0 chr4_random 6797067 6797094 -12054719 + AT_rich Low_complexity Low_complexity 1 27 0 346 221 144 0 chr4_random 6848107 6848211 -12003602 + LTR40a LTR ERVL 5 123 -396 1353 297 24 12 chr4_random 6848312 6848730 -12003083 + LTR40a LTR ERVL 97 519 0 249 245 105 91 chr4_random 6848899 6849042 -12002771 + L2 LINE L2 3167 3311 -2 590 311 118 4 chr4_random 6849334 6849588 -12002225 + MLT1J LTR MaLR 1 283 -228 8392 165 12 28 chr4_random 6849626 6850376 -12001437 - Tigger2 DNA MER2_type -1 2717 2002 189 0 0 0 chr4_random 6850376 6850397 -12001416 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 8392 165 12 28 chr4_random 6850397 6851185 -12000628 - Tigger2 DNA MER2_type -716 2002 1203 12705 118 43 9 chr4_random 6851933 6853599 -11998214 + Charlie3 DNA MER1_type 1 1741 -965 2067 110 7 7 chr4_random 6853599 6853891 -11997922 - AluSx SINE Alu 0 312 21 12705 118 43 9 chr4_random 6853891 6854108 -11997705 + Charlie3 DNA MER1_type 1741 1949 -757 3192 149 78 48 chr4_random 6854212 6854863 -11996950 - Tigger2 DNA MER2_type -2047 671 1 280 284 134 8 chr4_random 6854874 6855008 -11996805 + MIR SINE MIR 112 262 0 273 278 69 83 chr4_random 6855028 6855172 -11996641 + MLT1J LTR MaLR 324 465 -46 183 42 0 0 chr4_random 6855943 6855967 -11995846 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 22 35 0 0 chr4_random 6856001 6856030 -11995783 + AT_rich Low_complexity Low_complexity 1 29 0 297 20 60 0 chr4_random 6856056 6856106 -11995707 + (TA)n Simple_repeat Simple_repeat 1 53 0 342 333 65 0 chr4_random 6857549 6857687 -11994126 + MIR SINE MIR 63 209 -53 265 303 10 20 chr4_random 6857698 6857797 -11994016 - MIR SINE MIR -79 183 86 807 313 54 38 chr4_random 6858306 6858786 -11993027 - L2 LINE L2 0 3313 2826 1551 203 24 37 chr4_random 6858805 6859180 -11992633 - MLT1A2 LTR MaLR -4 370 1 27 0 0 0 chr4_random 6859836 6859863 -11991950 + AT_rich Low_complexity Low_complexity 1 27 0 197 353 93 22 chr4_random 6859930 6860069 -11991744 + L2 LINE L2 2894 3042 -230 297 305 160 11 chr4_random 6860085 6860272 -11991541 - MIR SINE MIR -24 238 24 233 29 29 0 chr4_random 6860281 6860315 -11991498 + (TA)n Simple_repeat Simple_repeat 2 36 0 254 384 160 4 chr4_random 6860471 6860708 -11991105 - L3 LINE CR1 -130 1447 1174 206 236 0 28 chr4_random 6860961 6861033 -11990780 + CT-rich Low_complexity Low_complexity 3 72 0 24 32 0 0 chr4_random 6861157 6861188 -11990625 + AT_rich Low_complexity Low_complexity 1 31 0 1896 194 20 3 chr4_random 6861360 6861711 -11990102 - MER47A DNA MER2_type -7 359 3 226 421 22 0 chr4_random 6861743 6861921 -11989892 - L1MEc LINE L1 -6029 367 186 40 21 0 0 chr4_random 6862013 6862060 -11989753 + AT_rich Low_complexity Low_complexity 1 47 0 2656 175 4 7 chr4_random 6862354 6862855 -11988958 - MER44D DNA MER2_type 0 605 1 229 25 0 50 chr4_random 6862886 6862926 -11988887 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1934 135 3 0 chr4_random 6863144 6863461 -11988352 - AluSq SINE Alu 0 320 3 180 304 81 68 chr4_random 6863713 6863861 -11987952 - L2 LINE L2 -994 2320 2171 22 0 0 0 chr4_random 6864118 6864140 -11987673 + AT_rich Low_complexity Low_complexity 1 22 0 254 331 13 40 chr4_random 6865152 6865303 -11986510 - L2 LINE L2 -5 3308 3162 43 64 0 0 chr4_random 6865395 6865473 -11986340 + AT_rich Low_complexity Low_complexity 1 78 0 277 354 73 16 chr4_random 6865929 6866121 -11985692 - L2 LINE L2 -526 2788 2586 2069 151 31 11 chr4_random 6866132 6866489 -11985324 - THE1B LTR MaLR 0 364 1 326 106 0 0 chr4_random 6866760 6866807 -11985006 - L1MA8 LINE L1 -356 5935 5889 1236 204 36 0 chr4_random 6866809 6867088 -11984725 + L1MA7 LINE L1 5997 6285 -6 271 333 173 41 chr4_random 6867727 6868144 -11983669 + L2 LINE L2 2842 3313 0 2030 97 35 0 chr4_random 6868859 6869148 -11982665 + Charlie3 DNA MER1_type 2408 2706 -4 186 43 0 0 chr4_random 6869531 6869554 -11982259 + (TG)n Simple_repeat Simple_repeat 2 24 0 2442 172 11 15 chr4_random 6869985 6870445 -11981368 - LTR22A LTR ERVK 0 458 1 5373 96 6 3 chr4_random 6871001 6872338 -11979475 - L1PA6 LINE L1 0 6154 4753 592 111 0 0 chr4_random 6872338 6872428 -11979385 - L1PA6 LINE L1 -3247 2899 2810 5828 98 43 5 chr4_random 6872428 6873606 -11978207 + L1PA10 LINE L1 4949 6168 0 1373 157 63 57 chr4_random 6873606 6873906 -11977907 - MER44D DNA MER2_type -36 573 2 21 36 0 0 chr4_random 6875261 6875289 -11976524 + AT_rich Low_complexity Low_complexity 1 28 0 199 277 0 0 chr4_random 6875859 6875906 -11975907 - MIR SINE MIR -179 83 37 241 121 60 0 chr4_random 6877210 6877293 -11974520 + (TA)n Simple_repeat Simple_repeat 1 88 0 21 0 0 0 chr4_random 6877294 6877315 -11974498 + AT_rich Low_complexity Low_complexity 1 21 0 648 197 27 69 chr4_random 6880410 6880598 -11971215 - MIR SINE MIR -13 249 70 387 250 105 26 chr4_random 6880839 6880991 -11970822 + LTR16C LTR ERVL 163 326 -165 7982 188 60 19 chr4_random 6881555 6882318 -11969495 - L1M4c LINE L1 -4575 1809 1079 207 0 0 0 chr4_random 6882318 6882341 -11969472 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 7982 188 60 19 chr4_random 6882341 6883297 -11968516 - L1M4c LINE L1 -5305 1079 19 1971 133 136 16 chr4_random 6886014 6886396 -11965417 + MSTA LTR MaLR 1 428 0 339 290 0 20 chr4_random 6886471 6886571 -11965242 + MER58A DNA MER1_type 1 98 -9 512 256 135 19 chr4_random 6886572 6886728 -11965085 + MER96 DNA MER1_type? 1 174 -1 * 578 250 7 0 chr4_random 6886728 6886859 -11964954 + MER58A DNA MER1_type 90 221 -3 723 291 0 68 chr4_random 6887086 6887337 -11964476 + MIR SINE MIR 27 260 -2 420 339 70 22 chr4_random 6888592 6888819 -11962994 - MIR SINE MIR -18 244 7 224 59 29 0 chr4_random 6889324 6889358 -11962455 + (TTA)n Simple_repeat Simple_repeat 2 36 0 33 25 0 0 chr4_random 6891594 6891634 -11960179 + AT_rich Low_complexity Low_complexity 1 40 0 1291 231 332 0 chr4_random 6891883 6892308 -11959505 + MER52A LTR ERV1 1 566 -1189 965 163 54 11 chr4_random 6892310 6892619 -11959194 - THE1C LTR MaLR -2 373 1 2716 184 47 25 chr4_random 6892619 6893174 -11958639 + MER52A LTR ERV1 562 1128 -627 700 54 0 0 chr4_random 6893177 6893269 -11958544 + AluSg/x SINE Alu 217 328 0 181 0 0 0 chr4_random 6893269 6893289 -11958524 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 2057 120 0 7 chr4_random 6893616 6893917 -11957896 + AluSg SINE Alu 1 299 -11 2594 29 0 0 chr4_random 6893987 6894317 -11957496 + L1PA4 LINE L1 5833 6162 0 186 43 0 0 chr4_random 6894365 6894388 -11957425 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 512 202 95 43 chr4_random 6895060 6895243 -11956570 + MLT1A2 LTR MaLR 1 188 -186 248 155 0 17 chr4_random 6895243 6895301 -11956512 + CT-rich Low_complexity Low_complexity 2 58 0 840 226 6 5 chr4_random 6895308 6895500 -11956313 + MLT1A2 LTR MaLR 188 380 -10 191 232 61 121 chr4_random 6895619 6895718 -11956095 + MIR SINE MIR 23 115 -147 598 233 0 15 chr4_random 6896516 6896649 -11955164 + FLAM_A SINE Alu 3 133 0 236 279 0 0 chr4_random 6897135 6897203 -11954610 + (TA)n Simple_repeat Simple_repeat 2 69 0 22 70 0 0 chr4_random 6897549 6897592 -11954221 + AT_rich Low_complexity Low_complexity 1 43 0 2538 40 0 0 chr4_random 6898207 6898504 -11953309 + AluY SINE Alu 1 297 -14 1487 50 0 0 chr4_random 6898504 6898683 -11953130 + AluY SINE Alu 133 311 0 1155 215 81 29 chr4_random 6898695 6899158 -11952655 + L1MB8 LINE L1 5169 5849 -335 2404 47 10 3 chr4_random 6899158 6899455 -11952358 - AluY SINE Alu -12 299 1 1155 215 81 29 chr4_random 6899455 6899577 -11952236 + L1MB8 LINE L1 5849 5963 -221 894 183 9 144 chr4_random 6899585 6899918 -11951895 + AluJo SINE Alu 1 288 -24 509 192 93 52 chr4_random 6899932 6900104 -11951709 + L1MB8 LINE L1 5958 6136 -42 184 277 0 0 chr4_random 6900426 6900473 -11951340 - MIR SINE MIR -70 192 146 318 344 56 6 chr4_random 6900487 6900647 -11951166 + MIR SINE MIR 73 240 -22 247 302 11 0 chr4_random 6900696 6900772 -11951041 - MIR SINE MIR -67 141 71 23 33 0 0 chr4_random 6901198 6901228 -11950585 + AT_rich Low_complexity Low_complexity 1 30 0 2058 116 0 3 chr4_random 6901873 6902158 -11949655 + AluSc SINE Alu 9 292 -17 541 128 47 0 chr4_random 6902776 6902862 -11948951 - AluSp SINE Alu -98 215 126 193 343 75 0 chr4_random 6903089 6903156 -11948657 - L2 LINE L2 -7 3265 3194 35 63 0 0 chr4_random 6903565 6903628 -11948185 + AT_rich Low_complexity Low_complexity 1 63 0 2111 226 80 24 chr4_random 6903640 6904346 -11947467 - L1MB8 LINE L1 -6 6983 6318 261 0 0 0 chr4_random 6904346 6904375 -11947438 + (TA)n Simple_repeat Simple_repeat 2 30 0 2111 226 80 24 chr4_random 6904375 6904389 -11947424 - L1MB8 LINE L1 -671 6318 6306 2254 89 20 0 chr4_random 6904389 6904691 -11947122 - AluSx SINE Alu -2 310 3 2111 226 80 24 chr4_random 6904691 6905104 -11946709 - L1MB8 LINE L1 -683 6306 5918 207 0 0 0 chr4_random 6905104 6905127 -11946686 + (CA)n Simple_repeat Simple_repeat 2 24 0 2111 226 80 24 chr4_random 6905127 6905321 -11946492 - L1MB8 LINE L1 -1071 5918 5403 1324 232 70 74 chr4_random 6905319 6906212 -11945601 - L1MB8 LINE L1 -5057 1798 916 * 1353 219 89 16 chr4_random 6906374 6906743 -11945070 + MSTD LTR MaLR 1 396 0 486 245 43 20 chr4_random 6907181 6907338 -11944475 - L1MB8 LINE L1 -6318 537 71 299 363 102 13 chr4_random 6907399 6907625 -11944188 - L2 LINE L2 -576 2738 2493 5701 171 24 36 chr4_random 6908138 6908726 -11943087 + Tigger1 DNA MER2_type 2 571 -1847 1552 210 7 7 chr4_random 6908726 6909017 -11942796 - AluJo SINE Alu -21 291 1 5701 171 24 36 chr4_random 6909017 6909527 -11942286 + Tigger1 DNA MER2_type 571 1086 -1332 2154 160 5 19 chr4_random 6909527 6909896 -11941917 - THE1B LTR MaLR 0 364 1 5313 168 14 16 chr4_random 6909896 6910831 -11940982 + Tigger1 DNA MER2_type 1085 2017 -401 243 308 31 0 chr4_random 6910896 6910961 -11940852 + LTR50 LTR ERVL 101 167 -628 30 0 0 0 chr4_random 6911325 6911355 -11940458 + AT_rich Low_complexity Low_complexity 1 30 0 6096 102 8 0 chr4_random 6911364 6912363 -11939450 - L1PA13 LINE L1 -9 6154 5157 861 168 0 0 chr4_random 6912365 6912502 -11939311 + Tigger1 DNA MER2_type 2020 2156 -262 1334 186 165 21 chr4_random 6912645 6912984 -11938829 + MLT1B LTR MaLR 1 388 -2 1951 106 47 33 chr4_random 6914837 6915138 -11936675 + AluSq SINE Alu 1 305 -8 30 59 0 0 chr4_random 6916218 6916269 -11935544 + AT_rich Low_complexity Low_complexity 1 51 0 26 82 0 0 chr4_random 6916361 6916422 -11935391 + AT_rich Low_complexity Low_complexity 1 61 0 6694 180 96 35 chr4_random 6917992 6919576 -11932237 - MER52A LTR ERV1 0 1755 1 2253 57 0 11 chr4_random 6919629 6919911 -11931902 + AluY SINE Alu 6 284 -27 30 0 0 0 chr4_random 6919911 6919941 -11931872 + AT_rich Low_complexity Low_complexity 1 30 0 645 252 25 0 chr4_random 6920298 6920457 -11931356 + MIR SINE MIR 100 262 0 546 57 0 0 chr4_random 6920644 6920714 -11931099 + (TA)n Simple_repeat Simple_repeat 2 71 0 28 0 0 0 chr4_random 6921052 6921080 -11930733 + AT_rich Low_complexity Low_complexity 1 28 0 1549 161 0 0 chr4_random 6921161 6921397 -11930416 - AluSx SINE Alu -76 236 1 297 348 92 7 chr4_random 6921532 6921673 -11930140 - MLT1H LTR MaLR 0 595 443 595 259 38 24 chr4_random 6921734 6921946 -11929867 - MLT1H LTR MaLR -256 293 79 483 379 51 35 chr4_random 6922647 6923211 -11928602 + ERVL LTR ERVL 1369 1941 -3823 401 294 75 27 chr4_random 6923323 6923510 -11928303 + LTR33 LTR ERVL 322 517 -4 2036 125 0 13 chr4_random 6923620 6923923 -11927890 - AluSg SINE Alu -11 299 1 23 0 0 0 chr4_random 6923933 6923956 -11927857 + AT_rich Low_complexity Low_complexity 1 23 0 9080 175 40 18 chr4_random 6924831 6926578 -11925235 - Tigger2 DNA MER2_type -934 1784 1 494 272 90 73 chr4_random 6926797 6926903 -11924910 - MER34 LTR ERV1 0 565 462 2055 115 0 0 chr4_random 6926903 6927182 -11924631 + AluSc SINE Alu 12 290 -19 494 272 90 73 chr4_random 6927182 6927637 -11924176 - MER34 LTR ERV1 -103 462 10 23 0 0 0 chr4_random 6927690 6927713 -11924100 + AT_rich Low_complexity Low_complexity 1 23 0 1644 170 4 4 chr4_random 6927743 6928008 -11923805 - AluSx SINE Alu -39 273 9 184 362 0 0 chr4_random 6928278 6928336 -11923477 + MIR3 SINE MIR 114 171 -37 566 328 38 11 chr4_random 6928815 6929080 -11922733 - LTR16A LTR ERVL -9 441 170 581 321 53 10 chr4_random 6929628 6929837 -11921976 - MIR SINE MIR -14 248 31 496 288 11 28 chr4_random 6930225 6930402 -11921411 + Charlie2 DNA MER1_type 35 208 -2654 564 266 51 0 chr4_random 6930486 6930663 -11921150 + Charlie2 DNA MER1_type 1859 2044 -818 394 234 30 7 chr4_random 6930794 6930948 -11920865 + MIR SINE MIR 35 164 -98 24 0 0 0 chr4_random 6930958 6930982 -11920831 + AT_rich Low_complexity Low_complexity 1 24 0 258 136 0 0 chr4_random 6931996 6932040 -11919773 + (CA)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr4_random 6932306 6932331 -11919482 + AT_rich Low_complexity Low_complexity 1 25 0 187 379 29 36 chr4_random 6932824 6932964 -11918849 - MER5A DNA MER1_type -30 159 21 180 208 104 0 chr4_random 6933051 6933099 -11918714 + L2 LINE L2 3261 3313 0 23 33 0 0 chr4_random 6933103 6933133 -11918680 + AT_rich Low_complexity Low_complexity 1 30 0 195 42 0 0 chr4_random 6933888 6933912 -11917901 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 28 48 0 0 chr4_random 6935494 6935536 -11916277 + AT_rich Low_complexity Low_complexity 1 42 0 296 291 149 21 chr4_random 6935636 6935777 -11916036 - MER5B DNA MER1_type -16 162 4 24 0 0 0 chr4_random 6935843 6935867 -11915946 + AT_rich Low_complexity Low_complexity 1 24 0 180 354 0 24 chr4_random 6937356 6937438 -11914375 - L2 LINE L2 -583 2731 2652 222 333 30 20 chr4_random 6937723 6937822 -11913991 + MER5A DNA MER1_type 4 103 -86 344 351 147 32 chr4_random 6937872 6938408 -11913405 - L2 LINE L2 -962 2352 1755 754 269 155 25 chr4_random 6938424 6938831 -11912982 + MLT1F1 LTR MaLR 1 490 -77 278 111 0 0 chr4_random 6938838 6938874 -11912939 + U2 snRNA snRNA 1 36 -152 258 32 0 0 chr4_random 6938890 6938921 -11912892 + (TG)n Simple_repeat Simple_repeat 2 32 0 1468 214 27 27 chr4_random 6939460 6939808 -11912005 + MLT2D LTR ERVL 69 414 0 400 298 127 0 chr4_random 6940180 6940385 -11911428 + MLT1F1 LTR MaLR 301 531 -36 443 381 60 18 chr4_random 6940620 6941056 -11910757 - L2 LINE L2 -1432 1882 1429 1826 199 64 15 chr4_random 6941160 6941568 -11910245 - MSTA LTR MaLR 0 428 1 1582 113 0 0 chr4_random 6941847 6942059 -11909754 + AluSq SINE Alu 87 298 -15 30 59 0 0 chr4_random 6942547 6942598 -11909215 + AT_rich Low_complexity Low_complexity 1 51 0 308 350 108 10 chr4_random 6943129 6943323 -11908490 - L1ME2 LINE L1 -227 5937 5725 262 333 76 0 chr4_random 6943403 6943535 -11908278 - L1ME2 LINE L1 -481 5689 5548 3040 83 2 0 chr4_random 6943774 6944184 -11907629 + L1PA8 LINE L1 5745 6179 0 184 42 0 0 chr4_random 6944184 6944208 -11907605 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 29 28 0 0 chr4_random 6944267 6944303 -11907510 + AT_rich Low_complexity Low_complexity 1 36 0 30 59 0 0 chr4_random 6946202 6946253 -11905560 + AT_rich Low_complexity Low_complexity 1 51 0 348 64 0 0 chr4_random 6947161 6947208 -11904605 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 54 0 0 chr4_random 6947490 6947527 -11904286 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chr4_random 6947607 6947637 -11904176 + (CA)n Simple_repeat Simple_repeat 2 31 0 835 252 99 38 chr4_random 6947678 6948071 -11903742 + MER110A LTR ERV1 43 459 -9 3297 105 39 4 chr4_random 6948333 6948827 -11902986 + MER9 LTR ERVK 1 511 0 200 200 0 0 chr4_random 6948948 6948983 -11902830 + A-rich Low_complexity Low_complexity 2 36 0 226 265 73 0 chr4_random 6949394 6949462 -11902351 + MIR SINE MIR 179 251 -11 190 338 70 0 chr4_random 6949761 6949832 -11901981 + MIR SINE MIR 48 123 -139 232 311 76 0 chr4_random 6949846 6949965 -11901848 + MIR SINE MIR 91 218 -44 327 98 39 0 chr4_random 6950091 6950142 -11901671 - MADE1 DNA Mariner -27 53 1 39 0 0 0 chr4_random 6950150 6950189 -11901624 + AT_rich Low_complexity Low_complexity 1 39 0 391 298 23 0 chr4_random 6950849 6950980 -11900833 - MLT1E2 LTR MaLR 0 626 493 290 120 20 0 chr4_random 6950957 6951007 -11900806 - MLT1D LTR MaLR -398 107 57 * 225 0 0 0 chr4_random 6951193 6951218 -11900595 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 57 0 0 chr4_random 6951246 6951281 -11900532 + AT_rich Low_complexity Low_complexity 1 35 0 1560 106 0 26 chr4_random 6952688 6952915 -11898898 - AluSq SINE Alu -8 305 85 1189 107 6 0 chr4_random 6952915 6953074 -11898739 - AluSp SINE Alu -148 165 6 23 33 0 0 chr4_random 6953809 6953839 -11897974 + AT_rich Low_complexity Low_complexity 1 30 0 242 231 62 0 chr4_random 6954066 6954131 -11897682 - MLT1J2 LTR MaLR -315 135 67 1834 257 49 40 chr4_random 6954575 6955143 -11896670 + MLT1E2 LTR MaLR 53 625 -1 859 363 127 15 chr4_random 6955182 6955823 -11895990 + L2 LINE L2 2593 3308 -5 26 0 0 0 chr4_random 6958349 6958375 -11893438 + AT_rich Low_complexity Low_complexity 1 26 0 318 318 52 79 chr4_random 6959054 6959384 -11892429 - L1ME LINE L1 -5194 876 556 22 0 0 0 chr4_random 6959922 6959944 -11891869 + AT_rich Low_complexity Low_complexity 1 22 0 1756 205 58 10 chr4_random 6960425 6960462 -11891351 - MLT2D LTR ERVL 0 414 380 258 32 0 0 chr4_random 6960462 6960493 -11891320 + (GA)n Simple_repeat Simple_repeat 2 32 0 1756 205 58 10 chr4_random 6960493 6960850 -11890963 - MLT2D LTR ERVL -34 380 1 559 195 82 63 chr4_random 6960879 6961053 -11890760 + MLT1E LTR MaLR 425 593 0 21 57 0 0 chr4_random 6961571 6961606 -11890207 + AT_rich Low_complexity Low_complexity 1 35 0 232 211 18 0 chr4_random 6961862 6961919 -11889894 + (TA)n Simple_repeat Simple_repeat 1 58 0 284 164 33 0 chr4_random 6961936 6961997 -11889816 + CT-rich Low_complexity Low_complexity 3 65 0 312 172 47 0 chr4_random 6962017 6962081 -11889732 - FLAM_A SINE Alu 0 133 67 207 211 18 0 chr4_random 6962084 6962141 -11889672 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 275 65 22 0 chr4_random 6962157 6962203 -11889610 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 650 285 62 0 chr4_random 6962811 6963004 -11888809 + MER20 DNA MER1_type 11 215 -4 21 36 0 0 chr4_random 6963067 6963095 -11888718 + AT_rich Low_complexity Low_complexity 1 28 0 191 279 98 0 chr4_random 6963867 6963928 -11887885 + L2 LINE L2 3168 3234 -38 1215 187 6 103 chr4_random 6964028 6964359 -11887454 - AluJo SINE Alu -3 299 1 248 155 0 17 chr4_random 6964889 6964947 -11886866 + (TA)n Simple_repeat Simple_repeat 1 57 0 232 352 6 7 chr4_random 6966619 6966811 -11885002 - MIR SINE MIR -9 253 39 2016 103 0 7 chr4_random 6968204 6968486 -11883327 + AluSx SINE Alu 1 280 -32 258 32 0 0 chr4_random 6968488 6968519 -11883294 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 385 302 85 38 chr4_random 6969395 6969630 -11882183 - MIR SINE MIR -2 260 15 1992 112 42 0 chr4_random 6969664 6969950 -11881863 + AluSq SINE Alu 1 298 -15 210 356 11 0 chr4_random 6970269 6970356 -11881457 + L2 LINE L2 3182 3269 -44 243 0 0 0 chr4_random 6970363 6970390 -11881423 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr4_random 6972434 6972456 -11879357 + AT_rich Low_complexity Low_complexity 1 22 0 199 293 9 57 chr4_random 6972678 6972784 -11879029 - MIR SINE MIR -2 260 160 979 126 7 0 chr4_random 6973323 6973474 -11878339 - AluSg/x SINE Alu -14 296 145 1228 266 84 53 chr4_random 6973945 6974471 -11877342 - MLT1H LTR MaLR 0 549 8 31 0 0 0 chr4_random 6974785 6974816 -11876997 + AT_rich Low_complexity Low_complexity 1 31 0 568 261 137 14 chr4_random 6974947 6975158 -11876655 + L1ME3A LINE L1 5842 6078 -92 1906 214 137 80 chr4_random 6975165 6975995 -11875818 - LTR28 LTR ERV1 0 1020 1 392 284 37 43 chr4_random 6976080 6976212 -11875601 + L1MEd LINE L1 947 1079 -5040 3575 111 0 4 chr4_random 6976212 6976725 -11875088 - MER9 LTR ERVK 0 511 1 392 284 37 43 chr4_random 6976725 6976754 -11875059 + L1MEd LINE L1 1079 1107 -5012 296 279 0 0 chr4_random 6976809 6976877 -11874936 + MLT1H LTR MaLR 109 176 -373 249 57 0 0 chr4_random 6977147 6977182 -11874631 + (T)n Simple_repeat Simple_repeat 1 35 0 2061 140 0 0 chr4_random 6977417 6977717 -11874096 + AluSx SINE Alu 1 300 -12 303 239 184 0 chr4_random 6977818 6977927 -11873886 + MLT1H LTR MaLR 421 549 0 533 336 126 40 chr4_random 6978384 6978692 -11873121 + L2 LINE L2 2795 3162 -151 1955 223 104 77 chr4_random 6978692 6979496 -11872317 - LTR1B LTR ERV1 0 826 1 533 336 126 40 chr4_random 6979496 6979663 -11872150 + L2 LINE L2 3162 3313 0 345 314 77 24 chr4_random 6979747 6979916 -11871897 - MLT1I LTR MaLR -119 290 113 251 250 56 0 chr4_random 6980098 6980170 -11871643 + MIR SINE MIR 159 234 -28 1491 181 26 13 chr4_random 6982544 6982853 -11868960 + L1MA7 LINE L1 5461 5773 -518 373 228 114 33 chr4_random 6982858 6983042 -11868771 + L1MA7 LINE L1 6107 6299 -1 3973 75 6 6 chr4_random 6983102 6983650 -11868163 + L1PA7 LINE L1 5607 6154 0 21 0 0 0 chr4_random 6985001 6985022 -11866791 + AT_rich Low_complexity Low_complexity 1 21 0 2167 120 3 0 chr4_random 6985877 6986177 -11865636 + AluSg SINE Alu 1 301 -9 2068 240 89 52 chr4_random 6986281 6986499 -11865314 + L1M4 LINE L1 4309 4518 -1628 3840 108 86 18 chr4_random 6986499 6987117 -11864696 - PABL_A LTR ERV1 0 660 1 2068 240 89 52 chr4_random 6987117 6987914 -11863899 + L1M4 LINE L1 4518 5361 -785 1941 136 4 0 chr4_random 6988039 6988339 -11863474 - AluSx SINE Alu 0 301 1 265 321 103 6 chr4_random 6990385 6990550 -11861263 - MIR SINE MIR -50 212 32 210 37 0 0 chr4_random 6991730 6991757 -11860056 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 767 170 71 7 chr4_random 6992089 6992124 -11859689 - MLT2B3 LTR ERVL 0 554 523 536 53 32 21 chr4_random 6992124 6992218 -11859595 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 767 170 71 7 chr4_random 6992218 6992323 -11859490 - MLT2B3 LTR ERVL -31 523 405 2016 178 63 5 chr4_random 6992953 6993316 -11858497 - LOR1b LTR ERV1 0 461 72 1511 192 6 28 chr4_random 6993316 6993633 -11858180 - AluJo SINE Alu -2 310 1 2016 178 63 5 chr4_random 6993633 6993668 -11858145 - LOR1b LTR ERV1 -389 72 40 277 30 0 0 chr4_random 6994917 6994950 -11856863 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 1957 138 3 3 chr4_random 6994950 6995233 -11856580 - AluSx SINE Alu -29 283 1 24 67 0 0 chr4_random 6995523 6995568 -11856245 + AT_rich Low_complexity Low_complexity 1 45 0 256 281 53 26 chr4_random 6995725 6995839 -11855974 - MIR SINE MIR -12 250 134 24 0 0 0 chr4_random 6995839 6995863 -11855950 + AT_rich Low_complexity Low_complexity 1 24 0 215 367 20 0 chr4_random 6996962 6997060 -11854753 - L2 LINE L2 -10 3262 3163 1925 169 0 0 chr4_random 6997546 6997848 -11853965 - AluSx SINE Alu -10 302 1 641 126 51 15 chr4_random 6998782 6999045 -11852768 + (TA)n Simple_repeat Simple_repeat 1 272 0 459 52 0 0 chr4_random 6999045 6999103 -11852710 + (CA)n Simple_repeat Simple_repeat 2 59 0 405 200 24 0 chr4_random 6999103 6999188 -11852625 + Tigger5 DNA MER2_type 6 92 -2231 449 156 39 0 chr4_random 6999225 6999302 -11852511 + Tigger5 DNA MER2_type 2244 2323 0 381 297 73 100 chr4_random 6999385 6999511 -11852302 + L1ME3 LINE L1 1083 1211 -5185 2005 139 0 17 chr4_random 6999511 6999812 -11852001 + AluSx SINE Alu 1 296 -16 381 297 73 100 chr4_random 6999812 7000284 -11851529 + L1ME3 LINE L1 1211 1665 -4731 1421 172 89 46 chr4_random 7000325 7000674 -11851139 - THE1B LTR MaLR 0 364 1 2034 150 3 0 chr4_random 7000707 7001013 -11850800 + AluSx SINE Alu 1 307 -5 346 299 72 46 chr4_random 7001387 7001732 -11850081 + L1ME3 LINE L1 4741 5094 -1121 966 193 64 0 chr4_random 7001735 7001922 -11849891 + MER2 DNA MER2_type 1 199 -146 602 272 113 12 chr4_random 7002046 7002533 -11849280 + L1ME3 LINE L1 5124 5665 -574 2175 141 19 19 chr4_random 7002571 7002933 -11848880 + THE1B LTR MaLR 1 362 -2 11297 100 14 1 chr4_random 7002935 7004495 -11847318 + THE1B-int LTR MaLR 1 1580 0 2168 147 11 31 chr4_random 7004495 7004855 -11846958 + THE1B LTR MaLR 1 353 -11 395 284 114 25 chr4_random 7004855 7005120 -11846693 + L1ME3 LINE L1 5872 6173 -58 1209 219 115 0 chr4_random 7005120 7005389 -11846424 + AluJb SINE Alu 1 300 -12 395 284 114 25 chr4_random 7005389 7005447 -11846366 + L1ME3 LINE L1 6173 6224 -7 504 333 95 30 chr4_random 7005713 7006112 -11845701 + L1ME2 LINE L1 4557 4981 -1165 48 102 0 0 chr4_random 7006297 7006464 -11845349 + AT_rich Low_complexity Low_complexity 1 167 0 189 0 0 0 chr4_random 7006565 7006586 -11845227 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 4154 202 75 13 chr4_random 7006841 7007867 -11843946 - L1MC2 LINE L1 -1 6761 5672 1682 208 32 2 chr4_random 7007880 7008288 -11843525 - L1MC2 LINE L1 -5179 1385 966 1216 269 138 41 chr4_random 7008296 7009045 -11842768 - L1MC2 LINE L1 -5147 903 184 1622 150 3 77 chr4_random 7009048 7009421 -11842392 - MER4A LTR ERV1 0 664 261 540 141 10 20 chr4_random 7009421 7009520 -11842293 - MER4A LTR ERV1 -566 98 1 565 210 21 21 chr4_random 7009520 7009663 -11842150 - L1MC2 LINE L1 -6267 297 155 2078 106 0 18 chr4_random 7010249 7010585 -11841228 + AluSc SINE Alu 5 335 0 2130 125 0 13 chr4_random 7011327 7011638 -11840175 + AluSx SINE Alu 6 312 0 1268 271 127 27 chr4_random 7011734 7012473 -11839340 + L1ME2 LINE L1 5296 6143 -21 561 268 27 16 chr4_random 7012583 7012766 -11839047 + L2 LINE L2 1521 1705 -1609 731 320 144 16 chr4_random 7012878 7013665 -11838148 + L2 LINE L2 2423 3311 -2 34 72 0 0 chr4_random 7013930 7013999 -11837814 + AT_rich Low_complexity Low_complexity 1 69 0 23 54 0 0 chr4_random 7014076 7014113 -11837700 + AT_rich Low_complexity Low_complexity 1 37 0 1546 208 53 17 chr4_random 7015302 7015663 -11836150 + MLT2D LTR ERVL 1 374 -40 1554 338 45 45 chr4_random 7016308 7017150 -11834663 - ERVL LTR ERVL -1323 4441 3597 2366 133 14 6 chr4_random 7017150 7017510 -11834303 + THE1B LTR MaLR 1 363 -1 1554 338 45 45 chr4_random 7017510 7017890 -11833923 - ERVL LTR ERVL -2166 3598 3219 29 28 0 0 chr4_random 7017899 7017935 -11833878 + AT_rich Low_complexity Low_complexity 1 36 0 835 342 69 14 chr4_random 7017979 7018567 -11833246 - ERVL LTR ERVL -1964 3032 2422 853 332 49 30 chr4_random 7019219 7019828 -11831985 - ERVL LTR ERVL -3393 1603 983 1251 231 43 12 chr4_random 7020245 7020661 -11831152 - Charlie1 DNA MER1_type -6 2755 2327 6482 190 138 26 chr4_random 7020750 7022261 -11829552 - MER52A LTR ERV1 0 1755 1 665 264 83 85 chr4_random 7022281 7022716 -11829097 - L2 LINE L2 -1266 2048 1615 2093 155 22 14 chr4_random 7025504 7025872 -11825941 + MER83C LTR ERV1 3 373 0 3419 268 63 57 chr4_random 7025929 7027976 -11823837 + MER83C-int LTR ERV1 47 1884 -3070 1505 317 51 41 chr4_random 7028684 7029774 -11822039 + MER83C-int LTR ERV1 2796 3896 -1058 280 345 0 0 chr4_random 7030176 7030286 -11821527 + MER83C-int LTR ERV1 6922 7031 -688 2075 246 14 20 chr4_random 7030487 7031147 -11820666 + MER83C-int LTR ERV1 4525 4862 -18 1849 186 21 37 chr4_random 7031161 7031538 -11820275 + MER83C LTR ERV1 3 373 0 27 29 0 0 chr4_random 7031706 7031740 -11820073 + AT_rich Low_complexity Low_complexity 1 34 0 1886 248 55 65 chr4_random 7031776 7032373 -11819440 - MER77 LTR ERV1 -9 596 6 862 139 0 28 chr4_random 7032866 7033010 -11818803 + MER50 LTR ERV1 2 141 -593 * 3372 166 12 8 chr4_random 7032997 7033583 -11818230 + HSMAR2 DNA Mariner 714 1301 -1 1248 227 47 65 chr4_random 7033682 7034194 -11817619 - MLT1D LTR MaLR -1 504 2 28 71 0 0 chr4_random 7035776 7035832 -11815981 + AT_rich Low_complexity Low_complexity 1 56 0 225 175 18 18 chr4_random 7038218 7038275 -11813538 - Charlie7 DNA MER1_type -2509 103 47 234 224 0 17 chr4_random 7038715 7038773 -11813040 - MIR SINE MIR -110 152 96 420 353 52 13 chr4_random 7038914 7039146 -11812667 + MIR SINE MIR 4 244 -18 27 49 0 0 chr4_random 7040886 7040927 -11810886 + AT_rich Low_complexity Low_complexity 1 41 0 253 206 32 0 chr4_random 7041094 7041157 -11810656 + (TA)n Simple_repeat Simple_repeat 1 65 0 449 103 0 51 chr4_random 7041256 7041334 -11810479 + MADE1 DNA Mariner 7 80 0 30 27 0 0 chr4_random 7041474 7041511 -11810302 + AT_rich Low_complexity Low_complexity 1 37 0 192 77 0 0 chr4_random 7042349 7042375 -11809438 + (TAA)n Simple_repeat Simple_repeat 2 27 0 3007 159 53 77 chr4_random 7042426 7043156 -11808657 + MER4D-int LTR ERV1 6046 6758 0 2278 157 13 14 chr4_random 7043156 7043908 -11807905 + MER4D LTR ERV1 1 751 -28 209 333 74 37 chr4_random 7044331 7044493 -11807320 + L2 LINE L2 2580 2747 -567 1199 250 72 32 chr4_random 7045217 7045313 -11806500 + MLT1D LTR MaLR 113 204 -301 2235 97 0 3 chr4_random 7045313 7045611 -11806202 + AluSx SINE Alu 1 297 -15 1199 250 72 32 chr4_random 7045611 7045890 -11805923 + MLT1D LTR MaLR 204 503 -2 21 36 0 0 chr4_random 7046008 7046036 -11805777 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4_random 7046461 7046483 -11805330 + AT_rich Low_complexity Low_complexity 1 22 0 363 169 0 0 chr4_random 7048040 7048111 -11803702 + (TA)n Simple_repeat Simple_repeat 1 71 0 225 273 0 11 chr4_random 7048130 7048218 -11803595 + L1MC4 LINE L1 6614 6700 -1342 * 249 255 0 43 chr4_random 7048187 7048281 -11803532 - L1MC4 LINE L1 -1339 6703 6614 246 160 75 53 chr4_random 7048290 7048384 -11803429 + L1MCa LINE L1 2006 2101 -4325 960 204 0 15 chr4_random 7048623 7048819 -11802994 + L1MA9 LINE L1 1 193 -6837 2526 230 28 4 chr4_random 7048842 7049756 -11802057 + L1MA9 LINE L1 5655 6594 -678 1775 216 115 0 chr4_random 7049772 7050216 -11801597 + L1MA9 LINE L1 6778 7272 0 327 294 69 96 chr4_random 7050216 7050626 -11801187 + L1M4 LINE L1 4764 5165 -981 22 0 0 0 chr4_random 7051418 7051440 -11800373 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr4_random 7051601 7051624 -11800189 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4_random 7052810 7052838 -11798975 + AT_rich Low_complexity Low_complexity 1 28 0 209 371 42 11 chr4_random 7054086 7054238 -11797575 + MIR SINE MIR 3 155 -69 3241 171 4 0 chr4_random 7054248 7054773 -11797040 - MER1A DNA MER1_type 0 527 1 1469 122 27 9 chr4_random 7054869 7055091 -11796722 + MER30 DNA MER1_type 5 230 0 25 51 0 0 chr4_random 7055101 7055140 -11796673 + AT_rich Low_complexity Low_complexity 1 39 0 210 300 0 0 chr4_random 7057300 7057370 -11794443 + GA-rich Low_complexity Low_complexity 3 72 0 345 309 39 85 chr4_random 7058346 7058605 -11793208 - MLT1I LTR MaLR -18 391 145 22 0 0 0 chr4_random 7060682 7060704 -11791109 + AT_rich Low_complexity Low_complexity 1 22 0 5102 184 26 18 chr4_random 7060783 7061468 -11790345 - L1MA9 LINE L1 -6 6306 5628 237 108 0 0 chr4_random 7061468 7061505 -11790308 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2210 82 0 0 chr4_random 7061505 7061786 -11790027 - AluSc SINE Alu -28 281 1 5102 184 26 18 chr4_random 7061786 7062628 -11789185 - L1MA9 LINE L1 -683 5629 4766 25 0 0 0 chr4_random 7062719 7062744 -11789069 + AT_rich Low_complexity Low_complexity 1 25 0 435 201 18 0 chr4_random 7062767 7062931 -11788882 + (TA)n Simple_repeat Simple_repeat 1 167 0 236 154 0 0 chr4_random 7062943 7062982 -11788831 + MADE1 DNA Mariner 1 39 -41 1288 167 53 0 chr4_random 7062983 7063229 -11788584 + L1M2 LINE L1 5379 5637 -675 261 0 0 0 chr4_random 7063279 7063308 -11788505 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 42229 32 24 1 chr4_random 7063313 7069318 -11782495 - L1PA2 LINE L1 -13 6142 1 23 0 0 0 chr4_random 7069988 7070011 -11781802 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr4_random 7070380 7070408 -11781405 + AT_rich Low_complexity Low_complexity 1 28 0 1622 185 62 3 chr4_random 7070705 7071030 -11780783 - MER2 DNA MER2_type 0 344 1 188 278 74 0 chr4_random 7071909 7071963 -11779850 + MER5C DNA MER1_type 34 91 -233 23 0 0 0 chr4_random 7072718 7072741 -11779072 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr4_random 7072783 7072816 -11778997 + (CA)n Simple_repeat Simple_repeat 2 34 0 483 281 66 28 chr4_random 7073191 7073487 -11778326 - L1MDa LINE L1 -3824 2716 2417 324 329 119 30 chr4_random 7073982 7074277 -11777536 - L1MDa LINE L1 -4821 1900 1580 22 70 0 0 chr4_random 7074365 7074408 -11777405 + AT_rich Low_complexity Low_complexity 1 43 0 29 60 0 0 chr4_random 7074459 7074509 -11777304 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr4_random 7074675 7074696 -11777117 + AT_rich Low_complexity Low_complexity 1 21 0 287 236 110 39 chr4_random 7074842 7074969 -11776844 - MLT1J1 LTR MaLR -233 213 78 216 0 0 0 chr4_random 7075736 7075760 -11776053 + (TA)n Simple_repeat Simple_repeat 2 25 0 697 301 65 86 chr4_random 7076767 7077323 -11774490 - L2 LINE L2 -8 3305 2764 731 256 33 22 chr4_random 7077513 7077783 -11774030 - L1ME1 LINE L1 -206 5960 5688 228 185 31 0 chr4_random 7078019 7078084 -11773729 - L1ME1 LINE L1 -947 5199 5133 13478 147 34 3 chr4_random 7078084 7080337 -11771476 - Tigger1 DNA MER2_type 0 2418 96 940 297 76 13 chr4_random 7080347 7080900 -11770913 - L1ME1 LINE L1 -2156 3990 3403 622 274 79 13 chr4_random 7080985 7081302 -11770511 - L1ME1 LINE L1 -3460 2686 2349 788 299 91 40 chr4_random 7082190 7082565 -11769248 + L2 LINE L2 2383 2776 -538 615 277 7 0 chr4_random 7082676 7082817 -11768996 + Tigger3(Golem) DNA MER2_type 2 143 -2886 * 1357 191 20 0 chr4_random 7082813 7083065 -11768748 + Tigger3(Golem) DNA MER2_type 2771 3027 -2 619 316 65 37 chr4_random 7083067 7083422 -11768391 + L2 LINE L2 2941 3305 -8 345 100 0 0 chr4_random 7084315 7084365 -11767448 + (TA)n Simple_repeat Simple_repeat 1 50 0 2356 85 0 0 chr4_random 7084365 7084670 -11767143 - AluY SINE Alu -6 305 1 2198 82 0 7 chr4_random 7084931 7085222 -11766591 + AluY SINE Alu 5 293 -18 1389 248 17 36 chr4_random 7086338 7086738 -11765075 - MSTD LTR MaLR -1 370 1 2096 90 46 3 chr4_random 7086941 7087398 -11764415 - L1ME LINE L1 -632 5532 5075 3519 75 4 8 chr4_random 7087398 7087873 -11763940 + L1PA7 LINE L1 5666 6143 -11 23 86 0 0 chr4_random 7088193 7088251 -11763562 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr4_random 7088353 7088374 -11763439 + AT_rich Low_complexity Low_complexity 1 21 0 227 278 0 100 chr4_random 7088742 7088832 -11762981 - L2 LINE L2 -2 3311 3231 378 59 0 0 chr4_random 7089070 7089121 -11762692 - MADE1 DNA Mariner 0 80 30 863 291 55 36 chr4_random 7090507 7090981 -11760832 - L1MEc LINE L1 -3087 3128 2646 603 288 58 40 chr4_random 7091017 7091653 -11760160 - L1MEc LINE L1 -3690 2525 1925 593 286 113 10 chr4_random 7091677 7091978 -11759835 + L1M4 LINE L1 3750 4081 -2065 515 230 184 0 chr4_random 7092399 7092551 -11759262 - LTR16A LTR ERVL -34 416 237 691 265 48 24 chr4_random 7092589 7092838 -11758975 + L1ME1 LINE L1 5904 6158 -8 208 378 37 0 chr4_random 7093276 7093358 -11758455 - MER5A DNA MER1_type -77 112 28 224 209 0 0 chr4_random 7093509 7093552 -11758261 + (CA)n Simple_repeat Simple_repeat 2 44 0 1177 187 27 42 chr4_random 7094011 7094273 -11757540 + AluJb SINE Alu 1 258 -54 2329 47 40 7 chr4_random 7094273 7094570 -11757243 + AluYa5 SINE Alu 1 307 -4 3425 157 25 8 chr4_random 7094882 7095482 -11756331 + L1PA15 LINE L1 5556 6165 0 869 165 81 64 chr4_random 7095986 7096222 -11755591 + L1MA9 LINE L1 6036 6275 -37 1600 258 68 16 chr4_random 7096532 7097043 -11754770 - MLT1F LTR MaLR 0 542 5 771 155 0 0 chr4_random 7097687 7097816 -11753997 + L1PA16 LINE L1 6029 6157 -9 22 0 0 0 chr4_random 7099246 7099268 -11752545 + AT_rich Low_complexity Low_complexity 1 22 0 940 335 22 11 chr4_random 7099344 7099714 -11752099 + LTR16A LTR ERVL 1 374 -76 462 114 0 0 chr4_random 7101904 7101974 -11749839 + (TG)n Simple_repeat Simple_repeat 2 71 0 300 188 0 0 chr4_random 7101974 7102043 -11749770 + (TA)n Simple_repeat Simple_repeat 2 70 0 306 294 0 22 chr4_random 7102050 7102142 -11749671 + L1MC4 LINE L1 6614 6703 -1339 212 216 20 0 chr4_random 7102142 7102193 -11749620 + (TA)n Simple_repeat Simple_repeat 2 53 0 214 267 17 0 chr4_random 7102460 7102520 -11749293 + (CATA)n Simple_repeat Simple_repeat 2 62 0 252 263 100 0 chr4_random 7102524 7102604 -11749209 - L1MC4 LINE L1 -1340 6702 6615 182 167 0 24 chr4_random 7102605 7102647 -11749166 + (CATATA)n Simple_repeat Simple_repeat 6 46 0 337 272 0 22 chr4_random 7102648 7102740 -11749073 - L1MC4 LINE L1 -1339 6703 6614 32 101 0 0 chr4_random 7102949 7103058 -11748755 + AT_rich Low_complexity Low_complexity 1 109 0 397 327 18 6 chr4_random 7103199 7103364 -11748449 + L1MEc LINE L1 38 204 -6192 394 293 79 12 chr4_random 7103397 7103561 -11748252 + L1MEc LINE L1 282 456 -5940 1491 275 85 30 chr4_random 7103674 7105400 -11746413 + L1MEc LINE L1 1000 2784 -3431 236 228 0 25 chr4_random 7105568 7105647 -11746166 + (TA)n Simple_repeat Simple_repeat 1 77 0 24 0 0 0 chr4_random 7106666 7106690 -11745123 + AT_rich Low_complexity Low_complexity 1 24 0 300 111 0 0 chr4_random 7107211 7107265 -11744548 + (GA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr4_random 7108262 7108283 -11743530 + AT_rich Low_complexity Low_complexity 1 21 0 244 273 108 45 chr4_random 7108303 7108479 -11743334 - MIR SINE MIR 0 262 76 1047 220 5 0 chr4_random 7108541 7108750 -11743063 - MER6B DNA MER2_type 0 210 1 205 231 0 19 chr4_random 7108750 7108802 -11743011 + (TA)n Simple_repeat Simple_repeat 1 51 0 233 284 75 0 chr4_random 7109215 7109282 -11742531 + L2 LINE L2 3215 3286 -27 243 200 0 29 chr4_random 7109381 7109451 -11742362 + LTR66 LTR ERVL 379 446 -164 291 286 0 0 chr4_random 7109455 7109539 -11742274 + (TA)n Simple_repeat Simple_repeat 2 85 0 461 32 32 0 chr4_random 7109796 7109858 -11741955 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 595 180 0 9 chr4_random 7109885 7109996 -11741817 + MSTA LTR MaLR 1 110 -318 1481 225 56 5 chr4_random 7109998 7110411 -11741402 - L1 LINE L1 -849 5297 4864 270 0 0 0 chr4_random 7110431 7110461 -11741352 + (CA)n Simple_repeat Simple_repeat 2 31 0 232 235 176 0 chr4_random 7110464 7110566 -11741247 + L1MA9 LINE L1 6170 6289 -23 230 222 86 12 chr4_random 7110573 7110654 -11741159 + L1MA9 LINE L1 6226 6312 0 * 320 238 24 92 chr4_random 7110650 7110856 -11740957 + L1MC/D LINE L1 5283 5474 -2334 311 363 76 13 chr4_random 7110882 7111119 -11740694 + L1MC/D LINE L1 5575 5826 -1982 22 0 0 0 chr4_random 7111408 7111430 -11740383 + AT_rich Low_complexity Low_complexity 1 22 0 365 267 104 40 chr4_random 7111577 7111779 -11740034 + L1ME3A LINE L1 5264 5478 -2330 21933 132 19 80 chr4_random 7112013 7116461 -11735352 + L1PA7 LINE L1 12 4187 -1959 6730 72 9 2 chr4_random 7116461 7118033 -11733780 + L1PA7 LINE L1 4566 6151 -3 2146 119 3 0 chr4_random 7118364 7118667 -11733146 - AluSq SINE Alu -9 304 1 306 349 30 25 chr4_random 7118747 7118945 -11732868 + L1ME3A LINE L1 5746 5944 -226 21 0 0 0 chr4_random 7119641 7119662 -11732151 + AT_rich Low_complexity Low_complexity 1 21 0 9049 217 33 46 chr4_random 7119662 7123260 -11728553 - L1MA9 LINE L1 -41 7690 4129 750 174 11 37 chr4_random 7123257 7123447 -11728366 - L1MA9 LINE L1 -3899 3666 3482 * 2049 141 22 33 chr4_random 7123483 7123851 -11727962 - THE1B LTR MaLR 0 364 1 648 249 23 80 chr4_random 7124074 7124414 -11727399 - L1MA9 LINE L1 -4167 3399 2835 2982 201 35 13 chr4_random 7124414 7125020 -11726793 + Tigger7 DNA MER2_type 1 619 -1868 1368 146 49 8 chr4_random 7125015 7125262 -11726551 + Tigger7 DNA MER2_type 2235 2491 0 * 2237 208 59 17 chr4_random 7125262 7126040 -11725773 - L1M4c LINE L1 -4466 2702 1757 371 351 50 59 chr4_random 7126036 7126477 -11725336 - L1M4c LINE L1 -5648 1520 1084 * 840 327 88 73 chr4_random 7126488 7127158 -11724655 - L1M4c LINE L1 -5902 1266 587 247 222 0 0 chr4_random 7127223 7127268 -11724545 - L1M4c LINE L1 -6782 386 342 645 238 20 0 chr4_random 7127324 7127471 -11724342 + Ricksha DNA DNA 1 150 -1104 286 159 0 48 chr4_random 7127463 7127526 -11724287 + ERVL LTR ERVL 5643 5702 -62 * 6892 183 57 24 chr4_random 7127519 7128831 -11722982 + Ricksha DNA DNA 1690 3025 -236 1783 147 61 31 chr4_random 7128831 7129191 -11722622 + THE1C LTR MaLR 1 371 -4 6892 183 57 24 chr4_random 7129191 7129423 -11722390 + Ricksha DNA DNA 3025 3248 -13 755 303 6 64 chr4_random 7129429 7129756 -11722057 - L1M4c LINE L1 -6857 311 4 27 29 0 0 chr4_random 7130163 7130197 -11721616 + AT_rich Low_complexity Low_complexity 1 34 0 253 315 162 0 chr4_random 7130477 7130588 -11721225 + MLT1J2 LTR MaLR 12 140 -310 2047 128 3 0 chr4_random 7130850 7131146 -11720667 + AluSx SINE Alu 1 297 -15 390 21 0 0 chr4_random 7131232 7131279 -11720534 + (TG)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr4_random 7131449 7131477 -11720336 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr4_random 7132597 7132631 -11719182 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr4_random 7132767 7132796 -11719017 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr4_random 7133218 7133255 -11718558 + AT_rich Low_complexity Low_complexity 1 37 0 402 21 0 0 chr4_random 7133285 7133332 -11718481 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2147 156 37 32 chr4_random 7133561 7134109 -11717704 - MLT2A2 LTR ERVL 0 554 1 21 0 0 0 chr4_random 7134391 7134412 -11717401 + AT_rich Low_complexity Low_complexity 1 21 0 300 163 10 20 chr4_random 7134634 7134732 -11717081 + (TA)n Simple_repeat Simple_repeat 2 98 0 851 200 0 27 chr4_random 7134856 7135041 -11716772 - L1PA13 LINE L1 -3 6160 5981 6381 193 54 11 chr4_random 7135043 7136736 -11715077 + L1PA13 LINE L1 1243 3081 -3716 411 314 86 59 chr4_random 7136871 7137161 -11714652 - L2 LINE L2 -5 3308 3011 21 0 0 0 chr4_random 7137295 7137316 -11714497 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr4_random 7137932 7137960 -11713853 + AT_rich Low_complexity Low_complexity 1 28 0 765 354 49 15 chr4_random 7138760 7139351 -11712462 - L2 LINE L2 -20 3293 2680 198 324 40 14 chr4_random 7140181 7140255 -11711558 + MIR SINE MIR 110 185 -77 24 0 0 0 chr4_random 7140567 7140591 -11711222 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr4_random 7141049 7141080 -11710733 + AT_rich Low_complexity Low_complexity 1 31 0 193 291 0 36 chr4_random 7192067 7192122 -11659691 - L2 LINE L2 -9 3304 3252 1692 224 141 52 chr4_random 7192173 7192803 -11659010 + MER76 LTR ERV 1 686 -2 1954 129 27 0 chr4_random 7193350 7193645 -11658168 - AluSq SINE Alu -10 303 1 274 332 62 70 chr4_random 7194382 7194852 -11656961 - MLT1K LTR MaLR -31 557 92 544 327 39 10 chr4_random 7195708 7195913 -11655900 + MIR SINE MIR 11 221 -41 31 82 0 0 chr4_random 7196353 7196426 -11655387 + AT_rich Low_complexity Low_complexity 1 73 0 221 335 66 62 chr4_random 7197730 7198034 -11653779 + L2 LINE L2 2837 3141 -172 660 282 29 10 chr4_random 7198333 7198539 -11653274 + L1MB8 LINE L1 7 216 -6643 577 353 10 10 chr4_random 7198564 7198765 -11653048 + L1MB8 LINE L1 296 496 -6363 28 0 0 0 chr4_random 7198828 7198856 -11652957 + AT_rich Low_complexity Low_complexity 1 28 0 1558 214 37 19 chr4_random 7198981 7199360 -11652453 - MLT1B LTR MaLR -4 386 1 2151 262 56 26 chr4_random 7199463 7200484 -11651329 + L1MB8 LINE L1 2876 3885 -3072 3342 211 39 41 chr4_random 7200491 7201459 -11650354 + L1MB8 LINE L1 6021 6984 -5 3321 209 81 39 chr4_random 7202247 7203283 -11648530 - Tigger6a DNA MER2_type -3 1080 1 204 322 107 8 chr4_random 7203498 7203619 -11648194 - MIR SINE MIR -33 229 97 183 129 0 0 chr4_random 7203812 7203843 -11647970 + (TC)n Simple_repeat Simple_repeat 2 32 0 294 371 10 0 chr4_random 7203885 7203982 -11647831 + MER5A DNA MER1_type 9 106 -83 25 51 0 0 chr4_random 7204063 7204102 -11647711 + AT_rich Low_complexity Low_complexity 1 39 0 8045 162 15 40 chr4_random 7204230 7205593 -11646220 + THE1-int LTR MaLR 116 1439 -141 1842 178 35 22 chr4_random 7205593 7205963 -11645850 - THE1C LTR MaLR 0 375 1 8045 162 15 40 chr4_random 7205963 7206102 -11645711 + THE1-int LTR MaLR 1439 1580 0 1233 181 107 0 chr4_random 7206140 7206383 -11645430 + MSTA LTR MaLR 160 428 0 2209 224 29 13 chr4_random 7206383 7206502 -11645311 + L1MB4 LINE L1 5614 5730 -450 221 0 35 0 chr4_random 7206502 7206531 -11645282 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2209 224 29 13 chr4_random 7206531 7206968 -11644845 + L1MB4 LINE L1 5730 6179 -1 524 190 0 20 chr4_random 7207013 7207113 -11644700 - Charlie1 DNA MER1_type -2580 181 84 458 215 98 61 chr4_random 7207119 7207282 -11644531 + MER20 DNA MER1_type 34 202 -17 1189 156 12 20 chr4_random 7208874 7209118 -11642695 - L1MA4 LINE L1 -3 6297 6056 2206 88 0 0 chr4_random 7209494 7209777 -11642036 - AluSc SINE Alu -10 299 17 479 300 40 29 chr4_random 7210144 7210494 -11641319 + L1MEd LINE L1 787 1140 -4979 1112 301 135 9 chr4_random 7210677 7211218 -11640595 - Zaphod DNA AcHobo -3418 613 5 28 61 0 0 chr4_random 7211506 7211555 -11640258 + AT_rich Low_complexity Low_complexity 1 49 0 218 340 142 20 chr4_random 7211574 7211821 -11639992 - L3 LINE CR1 -62 1515 1239 35 41 0 0 chr4_random 7212203 7212252 -11639561 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4_random 7212310 7212338 -11639475 + AT_rich Low_complexity Low_complexity 1 28 0 225 179 0 54 chr4_random 7212893 7212949 -11638864 + T-rich Low_complexity Low_complexity 4 56 0 22 35 0 0 chr4_random 7213044 7213073 -11638740 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr4_random 7213265 7213293 -11638520 + AT_rich Low_complexity Low_complexity 1 28 0 6940 16 0 0 chr4_random 7213333 7214128 -11637685 - L1PA2 LINE L1 0 6155 5361 6838 26 0 0 chr4_random 7214125 7214955 -11636858 + L1P LINE L1 4524 5353 -798 * 186 232 0 71 chr4_random 7216251 7216307 -11635506 + MER5A DNA MER1_type 125 176 -13 308 329 78 71 chr4_random 7216841 7217124 -11634689 - L2 LINE L2 -24 3289 3005 2109 137 3 0 chr4_random 7217515 7217822 -11633991 - AluSq SINE Alu -5 308 1 5120 92 108 4 chr4_random 7217884 7218632 -11633181 - LTR12 LTR ERV1 0 826 1 491 352 47 17 chr4_random 7220265 7220563 -11631250 + L2 LINE L2 796 1102 -2212 405 229 31 0 chr4_random 7220569 7220665 -11631148 - MER96B DNA MER1_type? -17 400 302 509 171 47 71 chr4_random 7220669 7220839 -11630974 + MER96B DNA MER1_type? 85 250 -167 1998 128 0 26 chr4_random 7220950 7221263 -11630550 + AluSq SINE Alu 3 307 -6 215 369 36 9 chr4_random 7222537 7222648 -11629165 - MIR SINE MIR -20 242 129 2097 121 0 0 chr4_random 7223870 7224179 -11627634 + AluSx SINE Alu 1 309 0 213 121 0 0 chr4_random 7224238 7224271 -11627542 + (GAAA)n Simple_repeat Simple_repeat 1 33 0 319 349 174 0 chr4_random 7224472 7224621 -11627192 - MER5A DNA MER1_type -1 188 14 677 187 8 0 chr4_random 7224780 7224903 -11626910 + MLT1A2 LTR MaLR 251 374 0 203 326 51 10 chr4_random 7225475 7225573 -11626240 + L2 LINE L2 722 823 -2491 1017 176 23 23 chr4_random 7225845 7226066 -11625747 + L1MA1 LINE L1 23 243 -7322 * 4721 122 65 12 chr4_random 7226063 7227346 -11624467 + L1MA1 LINE L1 1285 2739 -4826 14537 185 26 4 chr4_random 7227347 7231864 -11619949 + L1MA1 LINE L1 3106 7721 0 2236 201 68 19 chr4_random 7231875 7232814 -11618999 + L1MB8 LINE L1 4902 5890 -288 1995 251 59 20 chr4_random 7234116 7234737 -11617076 - MLT1E2 LTR MaLR -3 623 1 180 322 46 75 chr4_random 7234863 7235037 -11616776 + L2 LINE L2 1779 1947 -1367 2682 23 0 0 chr4_random 7235502 7235808 -11616005 + AluY SINE Alu 1 306 -5 343 331 53 42 chr4_random 7235975 7236238 -11615575 + L1MEd LINE L1 960 1225 -4894 186 43 0 0 chr4_random 7236342 7236365 -11615448 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 301 188 31 62 chr4_random 7236373 7236469 -11615344 + HAL1 LINE L1 1515 1607 -900 312 389 17 6 chr4_random 7237380 7237555 -11614258 - MLT1K LTR MaLR -256 332 156 1620 195 63 14 chr4_random 7238074 7238422 -11613391 + MLT1A1 LTR MaLR 1 365 0 468 0 0 0 chr4_random 7239452 7239504 -11612309 + (TA)n Simple_repeat Simple_repeat 2 53 0 1609 146 113 30 chr4_random 7239726 7240061 -11611752 + THE1C LTR MaLR 13 375 0 9080 142 17 37 chr4_random 7240063 7241674 -11610139 + THE1C-int LTR MaLR 3 1580 0 1166 212 132 15 chr4_random 7241674 7242000 -11609813 + THE1B LTR MaLR 1 364 0 680 350 13 1 chr4_random 7242002 7242220 -11609593 + LTR16A LTR ERVL 156 384 -73 26 30 0 0 chr4_random 7242986 7243019 -11608794 + AT_rich Low_complexity Low_complexity 1 33 0 207 275 84 30 chr4_random 7243348 7243479 -11608334 - L2 LINE L2 -831 2483 2346 225 294 76 11 chr4_random 7243951 7244043 -11607770 - MLT1L LTR MaLR -517 98 1 222 242 15 0 chr4_random 7244131 7244197 -11607616 + (TA)n Simple_repeat Simple_repeat 1 67 0 360 0 0 0 chr4_random 7244219 7244259 -11607554 + (TA)n Simple_repeat Simple_repeat 2 41 0 32 43 0 0 chr4_random 7245475 7245521 -11606292 + AT_rich Low_complexity Low_complexity 1 46 0 319 184 13 66 chr4_random 7246617 7246693 -11605120 - MLT1I LTR MaLR 0 409 338 287 298 8 23 chr4_random 7247711 7247842 -11603971 + HAL1b LINE L1 227 355 -993 242 250 31 0 chr4_random 7247966 7248030 -11603783 + LTR50 LTR ERVL 714 779 -16 6512 246 42 14 chr4_random 7248124 7250366 -11601447 - L1MC1 LINE L1 0 7128 4619 1589 165 7 34 chr4_random 7250366 7250681 -11601132 - AluSx SINE Alu 0 307 1 6512 246 42 14 chr4_random 7250681 7251382 -11600431 - L1MC1 LINE L1 -2509 4619 3939 1270 251 72 40 chr4_random 7251730 7251961 -11599852 - Charlie1b DNA MER1_type -2244 517 295 1782 175 3 19 chr4_random 7251961 7252275 -11599538 - AluSx SINE Alu -3 309 1 1270 251 72 40 chr4_random 7252275 7252544 -11599269 - Charlie1b DNA MER1_type -2466 295 1 239 338 14 104 chr4_random 7252545 7252767 -11599046 + L2 LINE L2 2579 2780 -534 22 70 0 0 chr4_random 7253784 7253827 -11597986 + AT_rich Low_complexity Low_complexity 1 43 0 875 248 52 31 chr4_random 7254256 7254675 -11597138 - L1M4 LINE L1 -2805 3341 2914 303 290 37 0 chr4_random 7254690 7254797 -11597016 - L1M4 LINE L1 -2663 3483 3373 1311 274 58 40 chr4_random 7254804 7255079 -11596734 - MLT1F1 LTR MaLR 0 567 279 1651 29 0 14 chr4_random 7255079 7255280 -11596533 + L1PA5 LINE L1 5945 6144 -10 201 74 0 0 chr4_random 7255280 7255307 -11596506 + (TA)n Simple_repeat Simple_repeat 2 28 0 1311 274 58 40 chr4_random 7255314 7255484 -11596329 - MLT1F1 LTR MaLR -288 279 114 229 253 53 13 chr4_random 7255503 7255578 -11596235 - L1MC1 LINE L1 -4338 2784 2707 575 267 84 68 chr4_random 7255586 7256028 -11595785 - L1MC1 LINE L1 -4656 2466 2018 330 286 23 30 chr4_random 7256047 7256180 -11595633 - L1MC1 LINE L1 -5120 1811 1680 261 267 69 0 chr4_random 7256184 7256285 -11595528 - L1MC1 LINE L1 -4905 1518 1411 469 202 0 19 chr4_random 7256387 7256491 -11595322 - L1MA10 LINE L1 -3 6331 6230 446 300 63 21 chr4_random 7256964 7257201 -11594612 - L1MC1 LINE L1 -6080 1042 796 1921 99 48 7 chr4_random 7257595 7257868 -11593945 + AluSg SINE Alu 12 295 -15 405 279 167 56 chr4_random 7258880 7259400 -11592413 - L1ME3A LINE L1 -11 6159 5582 1913 197 106 9 chr4_random 7259400 7259826 -11591987 - MLT1D LTR MaLR 0 505 39 225 94 0 0 chr4_random 7260047 7260079 -11591734 + (TG)n Simple_repeat Simple_repeat 1 32 0 456 133 13 0 chr4_random 7260085 7260160 -11591653 - MADE1 DNA Mariner -3 77 2 2016 141 0 10 chr4_random 7260212 7260517 -11591296 + AluSx SINE Alu 1 302 -10 2030 287 70 31 chr4_random 7261795 7263387 -11588426 + L1ME LINE L1 141 1738 -4477 339 353 13 0 chr4_random 7263657 7263807 -11588006 + L1ME LINE L1 2171 2322 -4074 22 56 0 0 chr4_random 7264972 7265008 -11586805 + AT_rich Low_complexity Low_complexity 1 36 0 2209 91 0 0 chr4_random 7265223 7265520 -11586293 + AluY SINE Alu 1 297 -14 22 56 0 0 chr4_random 7266381 7266417 -11585396 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr4_random 7266930 7266970 -11584843 + (TATATG)n Simple_repeat Simple_repeat 5 44 0 225 220 34 0 chr4_random 7267373 7267432 -11584381 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 1753 196 0 6 chr4_random 7268379 7268691 -11583122 + AluJo SINE Alu 1 310 -2 180 77 0 0 chr4_random 7270054 7270080 -11581733 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 2785 142 13 23 chr4_random 7270096 7270625 -11581188 - L1MA5A LINE L1 -7 6290 5767 205 118 39 0 chr4_random 7270625 7270676 -11581137 + (TA)n Simple_repeat Simple_repeat 1 53 0 667 177 8 0 chr4_random 7270680 7270804 -11581009 - L1MA5A LINE L1 -508 5789 5665 * 8080 193 30 23 chr4_random 7270794 7271782 -11580031 + L1M2 LINE L1 3442 4422 -1875 1000 215 113 58 chr4_random 7271782 7271887 -11579926 + AluJb SINE Alu 1 99 -203 243 0 0 0 chr4_random 7271887 7271914 -11579899 + (CA)n Simple_repeat Simple_repeat 2 28 0 1000 215 113 58 chr4_random 7271914 7272082 -11579731 + AluJb SINE Alu 99 289 -13 8080 193 30 23 chr4_random 7272082 7273291 -11578522 + L1M2 LINE L1 4422 5660 -637 22 0 0 0 chr4_random 7273811 7273833 -11577980 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr4_random 7273900 7273928 -11577885 + (TG)n Simple_repeat Simple_repeat 1 28 0 703 222 45 10 chr4_random 7274223 7274421 -11577392 + MER3 DNA MER1_type 5 209 0 22 56 0 0 chr4_random 7274669 7274705 -11577108 + AT_rich Low_complexity Low_complexity 1 36 0 732 315 34 25 chr4_random 7275487 7275811 -11576002 - LTR16A LTR ERVL -107 343 17 342 324 38 47 chr4_random 7275957 7276305 -11575508 - ERVL LTR ERVL -310 5344 5040 870 368 68 17 chr4_random 7276356 7277101 -11574712 - ERVL LTR ERVL -757 4897 4115 287 388 37 18 chr4_random 7277367 7277640 -11574173 - ERVL LTR ERVL -1807 3847 3570 27 0 0 0 chr4_random 7277823 7277850 -11573963 + AT_rich Low_complexity Low_complexity 1 27 0 1427 219 12 6 chr4_random 7277861 7278186 -11573627 + L1MB3 LINE L1 5779 6105 -78 46 0 0 0 chr4_random 7278186 7278232 -11573581 + AT_rich Low_complexity Low_complexity 1 46 0 405 252 36 0 chr4_random 7278712 7278823 -11572990 - MIR SINE MIR -43 219 105 210 181 56 0 chr4_random 7279440 7279512 -11572301 + (TA)n Simple_repeat Simple_repeat 1 76 0 180 0 0 0 chr4_random 7279550 7279570 -11572243 + (CA)n Simple_repeat Simple_repeat 2 21 0 23 0 0 0 chr4_random 7279953 7279976 -11571837 + AT_rich Low_complexity Low_complexity 1 23 0 254 360 29 14 chr4_random 7280305 7280444 -11571369 - MIR3 SINE MIR -1 207 67 307 268 138 32 chr4_random 7280811 7280934 -11570879 + MIR SINE MIR 111 246 -16 3186 60 0 0 chr4_random 7281096 7281496 -11570317 - L1PA7 LINE L1 -1 6153 5754 216 67 0 0 chr4_random 7282094 7282124 -11569689 + (ATG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr4_random 7283489 7283511 -11568302 + AT_rich Low_complexity Low_complexity 1 22 0 1014 192 100 0 chr4_random 7283511 7283772 -11568041 - MER33 DNA MER1_type -36 288 2 23 0 0 0 chr4_random 7283978 7284001 -11567812 + AT_rich Low_complexity Low_complexity 1 23 0 605 322 22 32 chr4_random 7284002 7284316 -11567497 - L1ME3A LINE L1 0 6170 5860 2068 243 50 17 chr4_random 7284375 7284914 -11566899 + MER90 LTR ERV1 1 557 -57 369 0 0 0 chr4_random 7287362 7287403 -11564410 + (TG)n Simple_repeat Simple_repeat 2 42 0 287 283 119 96 chr4_random 7287921 7288140 -11563673 + MIR SINE MIR 12 235 -27 28 91 0 0 chr4_random 7288401 7288478 -11563335 + AT_rich Low_complexity Low_complexity 1 77 0 1354 194 75 65 chr4_random 7288941 7289337 -11562476 + MLT1B LTR MaLR 2 390 0 2118 131 0 0 chr4_random 7289482 7289773 -11562040 - AluSx SINE Alu -17 295 5 2135 172 50 8 chr4_random 7289836 7290238 -11561575 + MSTB1 LTR MaLR 14 432 0 279 323 30 0 chr4_random 7290962 7291061 -11560752 + MLT1I LTR MaLR 37 138 -271 291 324 37 27 chr4_random 7293272 7293429 -11558384 - MIR SINE MIR -98 164 8 308 58 0 58 chr4_random 7294377 7294429 -11557384 + (TAAAA)n Simple_repeat Simple_repeat 2 50 0 260 333 139 9 chr4_random 7294434 7294542 -11557271 + MIR SINE MIR 8 129 -133 324 333 13 67 chr4_random 7294866 7295091 -11556722 + MLT1J LTR MaLR 247 459 -52 328 157 0 14 chr4_random 7295248 7295318 -11556495 + L1MA6 LINE L1 6226 6294 -6 2247 297 62 8 chr4_random 7295979 7297186 -11554627 - L1M4 LINE L1 -1569 4577 3306 29 0 0 0 chr4_random 7297186 7297215 -11554598 + AT_rich Low_complexity Low_complexity 1 29 0 277 321 54 0 chr4_random 7298014 7298121 -11553692 - MIR SINE MIR -65 143 45 183 289 20 105 chr4_random 7299818 7299970 -11551843 + MIR SINE MIR 65 203 -59 794 262 66 4 chr4_random 7300144 7300388 -11551425 - L1MB7 LINE L1 -8 6176 5918 28 61 0 0 chr4_random 7300404 7300453 -11551360 + AT_rich Low_complexity Low_complexity 1 49 0 500 202 70 0 chr4_random 7300472 7300586 -11551227 - L1MB7 LINE L1 -273 5911 5790 354 274 118 9 chr4_random 7300594 7300806 -11551007 - L1MDa LINE L1 -2752 3892 3658 21 71 0 0 chr4_random 7300832 7300874 -11550939 + AT_rich Low_complexity Low_complexity 1 42 0 1699 162 173 6 chr4_random 7300941 7301306 -11550507 - MSTA LTR MaLR -2 426 1 4925 174 9 17 chr4_random 7301306 7302170 -11549643 - THE1B-int LTR MaLR 0 1580 724 381 211 0 0 chr4_random 7302178 7302249 -11549564 - MER76 LTR ERV -534 154 84 991 122 6 33 chr4_random 7302249 7302412 -11549401 - THE1B-int LTR MaLR -1475 176 17 2138 128 54 20 chr4_random 7302412 7302764 -11549049 - THE1B LTR MaLR 0 364 1 991 122 6 33 chr4_random 7302764 7302781 -11549032 - THE1B-int LTR MaLR -1634 17 1 2090 138 138 5 chr4_random 7302781 7303158 -11548655 - MSTA LTR MaLR 0 428 2 1840 250 80 38 chr4_random 7303174 7304138 -11547675 - L1MDa LINE L1 -3115 3529 2523 2064 276 17 31 chr4_random 7304348 7304635 -11547178 - L1MDa LINE L1 -4570 2076 1787 2548 161 13 11 chr4_random 7304635 7305095 -11546718 + L1PA16 LINE L1 5704 6164 -2 2064 276 17 31 chr4_random 7305095 7305552 -11546261 - L1MDa LINE L1 -4859 1787 1342 823 221 70 18 chr4_random 7305546 7305831 -11545982 - L1MD3 LINE L1 0 7995 7696 * 708 97 9 18 chr4_random 7305830 7305943 -11545870 - L1PBa LINE L1 -6116 747 636 * 1053 158 20 0 chr4_random 7305945 7306141 -11545672 - L1PBa LINE L1 -6663 200 1 3506 253 48 43 chr4_random 7306144 7307502 -11544311 - L1MDa LINE L1 -5166 1376 12 23 0 0 0 chr4_random 7307707 7307730 -11544083 + AT_rich Low_complexity Low_complexity 1 23 0 200 132 0 26 chr4_random 7307811 7307849 -11543964 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr4_random 7308019 7308042 -11543771 + AT_rich Low_complexity Low_complexity 1 23 0 192 361 17 8 chr4_random 7308606 7308725 -11543088 - L3 LINE CR1 -364 1213 1094 2106 166 78 2 chr4_random 7308786 7309184 -11542629 - MSTC LTR MaLR 0 428 1 287 305 15 0 chr4_random 7309276 7309362 -11542451 + MIR SINE MIR 31 119 -89 192 395 9 9 chr4_random 7309351 7309460 -11542353 - L2 LINE L2 -619 2695 2587 * 196 393 55 21 chr4_random 7309474 7309619 -11542194 - L2 LINE L2 -20 3252 3103 522 280 40 0 chr4_random 7309657 7309807 -11542006 - L3 LINE CR1 -490 1087 932 1443 225 95 72 chr4_random 7310478 7310493 -11541320 + MLT2B2 LTR ERVL 8 21 -494 2765 196 48 54 chr4_random 7310493 7311219 -11540594 + MER72 LTR ERV1 1 722 0 1443 225 95 72 chr4_random 7311219 7311688 -11540125 + MLT2B2 LTR ERVL 21 503 -12 6838 216 33 40 chr4_random 7311696 7312037 -11539776 + ERVL-B2 LTR ERVL 2 344 -5420 627 135 63 0 chr4_random 7312037 7312163 -11539650 + L1MA7 LINE L1 6158 6291 0 6838 216 33 40 chr4_random 7312163 7313438 -11538375 + ERVL-B2 LTR ERVL 344 1607 -4157 * 10410 197 29 37 chr4_random 7313431 7314154 -11537659 + ERVL LTR ERVL 3279 4007 -1757 540 65 0 0 chr4_random 7314154 7314231 -11537582 + (CA)n Simple_repeat Simple_repeat 2 78 0 10410 197 29 37 chr4_random 7314231 7315052 -11536761 + ERVL LTR ERVL 4007 4801 -963 2077 124 3 3 chr4_random 7315052 7315350 -11536463 + AluSq SINE Alu 1 298 -15 10410 197 29 37 chr4_random 7315350 7315971 -11535842 + ERVL LTR ERVL 4801 5426 -338 243 61 0 0 chr4_random 7315981 7316014 -11535799 + (CA)n Simple_repeat Simple_repeat 2 34 0 226 133 0 67 chr4_random 7316014 7316048 -11535765 + MLT2B1 LTR ERVL 481 513 -7 448 326 44 11 chr4_random 7316782 7316963 -11534850 + MIR SINE MIR 2 188 -74 713 279 53 11 chr4_random 7316975 7317237 -11534576 - LTR52 LTR ERVL -3 418 146 453 246 8 30 chr4_random 7317266 7317400 -11534413 - LTR52 LTR ERVL -266 155 25 2021 95 0 0 chr4_random 7317414 7317676 -11534137 - AluSq SINE Alu -14 299 38 307 213 88 0 chr4_random 7317814 7317894 -11533919 - LTR52-int LTR ERVL -2480 3205 3119 3598 279 49 12 chr4_random 7317900 7318976 -11532837 - LTR52-int LTR ERVL -239 3317 1658 3822 264 50 26 chr4_random 7319060 7319797 -11532016 - LTR52-int LTR ERVL -1489 2067 1286 1979 148 42 28 chr4_random 7319797 7320156 -11531657 - THE1B LTR MaLR 0 364 1 3822 264 50 26 chr4_random 7320156 7320665 -11531148 - LTR52-int LTR ERVL -2270 1286 791 2464 251 29 43 chr4_random 7320674 7321354 -11530459 - LTR52-int LTR ERVL -2885 671 1 1241 246 57 37 chr4_random 7321361 7321764 -11530049 - LTR52 LTR ERVL -10 411 1 253 298 37 102 chr4_random 7321838 7322053 -11529760 - MLT1J LTR MaLR -200 311 111 1322 297 34 51 chr4_random 7323680 7324314 -11527499 + L1M3e LINE L1 1 1801 -5229 1702 213 43 9 chr4_random 7324318 7324764 -11527049 + L1M3e LINE L1 2058 2518 -4519 4646 31 0 0 chr4_random 7324796 7325342 -11526471 - L1PA4 LINE L1 -183 5972 5427 1272 65 0 0 chr4_random 7325342 7325504 -11526309 + L1PA4 LINE L1 5988 6155 0 5777 240 72 30 chr4_random 7325507 7328169 -11523644 + L1M4c LINE L1 1405 4204 -2178 346 131 0 0 chr4_random 7328172 7328233 -11523580 + L1MA9 LINE L1 6250 6310 -2 24 0 0 0 chr4_random 7328239 7328263 -11523550 + AT_rich Low_complexity Low_complexity 1 24 0 226 77 0 0 chr4_random 7328972 7329011 -11522802 - AluY SINE Alu 0 302 264 1485 29 6 0 chr4_random 7329019 7329190 -11522623 - AluY SINE Alu -139 172 1 2554 29 7 26 chr4_random 7329213 7329523 -11522290 - AluY SINE Alu -2 309 6 1910 123 0 14 chr4_random 7329892 7330201 -11521612 + AluY SINE Alu 1 305 0 21 57 0 0 chr4_random 7330497 7330532 -11521281 + AT_rich Low_complexity Low_complexity 1 35 0 730 226 210 20 chr4_random 7330669 7330864 -11520949 - MSTD LTR MaLR 0 396 165 4555 106 24 69 chr4_random 7330864 7331695 -11520118 - L1P LINE L1 -925 5221 4428 6747 65 11 0 chr4_random 7331696 7332583 -11519230 + L1PA7 LINE L1 5258 6154 0 542 14 0 0 chr4_random 7333148 7333217 -11518596 + L1PA2 LINE L1 6087 6155 0 1554 243 12 3 chr4_random 7335435 7335781 -11516032 - MLT1A1 LTR MaLR -16 349 1 1151 181 70 0 chr4_random 7337305 7337520 -11514293 - AluJo SINE Alu -82 230 1 362 137 0 14 chr4_random 7337640 7337713 -11514100 + (TA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr4_random 7338116 7338139 -11513674 + AT_rich Low_complexity Low_complexity 1 23 0 294 29 0 86 chr4_random 7338158 7338228 -11513585 + (TA)n Simple_repeat Simple_repeat 1 64 0 219 50 17 83 chr4_random 7338329 7338389 -11513424 + (TA)n Simple_repeat Simple_repeat 1 56 0 459 167 18 88 chr4_random 7339049 7339163 -11512650 - MLT1D LTR MaLR -399 106 1 3993 110 33 16 chr4_random 7339588 7340216 -11511597 + L1PA13 LINE L1 5524 6162 -1 26 30 0 0 chr4_random 7340460 7340493 -11511320 + AT_rich Low_complexity Low_complexity 1 33 0 333 417 38 29 chr4_random 7340626 7341206 -11510607 + L2 LINE L2 814 1398 -1916 1611 184 51 24 chr4_random 7341443 7341779 -11510034 - MER7A DNA MER2_type 0 346 4 5972 123 41 34 chr4_random 7341828 7342891 -11508922 + MER11C LTR ERVK 1 1071 0 2544 78 0 0 chr4_random 7342891 7343210 -11508603 + HERVK11 LTR ERVK 1 319 -7634 1018 99 0 0 chr4_random 7343208 7343359 -11508454 + HERVK11 LTR ERVK 796 946 -7007 * 751 324 31 22 chr4_random 7344093 7344417 -11507396 - LTR16A LTR ERVL -107 343 17 3002 293 66 12 chr4_random 7346308 7347333 -11504480 - LTR16A-int LTR ERVL -239 3317 2237 1776 196 0 6 chr4_random 7347925 7348237 -11503576 + AluJo SINE Alu 1 310 -2 1199 221 75 4 chr4_random 7348862 7349116 -11502697 + MLT1A1 LTR MaLR 94 365 0 180 0 0 0 chr4_random 7350242 7350262 -11501551 + (C)n Simple_repeat Simple_repeat 1 20 0 422 220 82 25 chr4_random 7350381 7350540 -11501273 + THE1B LTR MaLR 12 179 -185 18204 46 2 5 chr4_random 7550597 7553346 -11298467 - L1P2 LINE L1 -463 5692 2953 1085 150 1 2 chr4_random 7553454 7555761 -11296052 + ALR/Alpha Satellite centromeric 1 2306 -1 11202 40 2 1 chr4_random 7555761 7557229 -11294584 - L1P LINE L1 -2017 4129 2661 6526 93 0 51 chr4_random 7557229 7558535 -11293278 + L1PA3 LINE L1 4911 6168 0 1099 165 2 1 chr4_random 7558541 7562032 -11289781 + ALR/Alpha Satellite centromeric 1 3494 -112 1910 31 0 0 chr4_random 7562032 7562259 -11289554 + L1PA2 LINE L1 5927 6153 -2 931 177 2 0 chr4_random 7562298 7562670 -11289143 + ALR/Alpha Satellite centromeric 1 372 -13 929 175 5 2 chr4_random 7562771 7567405 -11284408 + ALR/Alpha Satellite centromeric 1 4650 -60 221 56 0 28 chr4_random 7567414 7567450 -11284363 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 3560 62 2 0 chr4_random 7567450 7567916 -11283897 - L1PA3 LINE L1 -24 6131 5665 * 7967 49 1 0 chr4_random 7567913 7568972 -11282841 + L1P LINE L1 2931 3990 -2156 794 139 12 8 chr4_random 7568972 7569145 -11282668 + ALR/Alpha Satellite centromeric 1 173 -12 853 204 2 0 chr4_random 7569157 7569455 -11282358 + ALR/Alpha Satellite centromeric 1 298 -45 971 172 6 1 chr4_random 7569555 7571462 -11280351 - ALR/Alpha Satellite centromeric -100 1916 1 2224 291 42 22 chr4_random 7571564 7573092 -11278721 - L1M1 LINE L1 -4082 2024 926 418 238 0 19 chr4_random 7573130 7573235 -11278578 - L1M1 LINE L1 -6921 109 7 270 262 75 28 chr4_random 7573381 7573488 -11278325 + MIR SINE MIR 80 191 -71 906 212 72 47 chr4_random 7573837 7574182 -11277631 - MER67C LTR ERV1 -3 511 173 360 258 50 33 chr4_random 7574764 7574884 -11276929 + MIR SINE MIR 23 144 -118 210 302 104 0 chr4_random 7575049 7575155 -11276658 - MIR SINE MIR -66 196 80 679 203 0 0 chr4_random 7576773 7576896 -11274917 - FLAM_C SINE Alu -18 125 3 224 371 26 17 chr4_random 7577315 7577431 -11274382 + MIR SINE MIR 24 140 -122 195 286 36 24 chr4_random 7577502 7577586 -11274227 + MIR SINE MIR 166 250 -12 195 352 67 0 chr4_random 7577608 7577713 -11274100 - MIR SINE MIR -71 191 80 228 77 58 0 chr4_random 7578200 7578252 -11273561 + (TA)n Simple_repeat Simple_repeat 2 56 0 1715 199 75 33 chr4_random 7578481 7578963 -11272850 - MLT1D LTR MaLR -3 502 1 940 212 52 108 chr4_random 7579284 7579671 -11272142 - MLT1A1 LTR MaLR 0 365 1 264 300 0 11 chr4_random 7580191 7580281 -11271532 + LTR67 LTR ERVL 434 522 -35 286 238 0 0 chr4_random 7581128 7581191 -11270622 - MLT1K LTR MaLR -10 578 516 1156 205 96 0 chr4_random 7581279 7581738 -11270075 - Charlie1b DNA MER1_type 0 523 24 1058 197 27 63 chr4_random 7582150 7582450 -11269363 - AluJo SINE Alu -17 295 7 1061 189 6 0 chr4_random 7582518 7582698 -11269115 - AluJb SINE Alu -23 289 109 1028 229 106 37 chr4_random 7582875 7583225 -11268588 - MLT1A2 LTR MaLR 0 374 1 254 275 135 48 chr4_random 7583526 7583755 -11268058 - MIR SINE MIR -13 249 1 228 286 52 44 chr4_random 7586793 7586928 -11264885 + MIR SINE MIR 36 173 -62 397 361 75 34 chr4_random 7587024 7587409 -11264404 + L2 LINE L2 1499 1899 -1415 1085 200 130 3 chr4_random 7587417 7587747 -11264066 - MLT1B LTR MaLR -10 380 9 1008 76 6 19 chr4_random 7587790 7587948 -11263865 + (TTTC)n Simple_repeat Simple_repeat 3 158 0 643 127 60 0 chr4_random 7587948 7588098 -11263715 + CT-rich Low_complexity Low_complexity 4 162 0 354 111 0 19 chr4_random 7588098 7588152 -11263661 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 304 271 76 8 chr4_random 7588159 7588277 -11263536 - L1PB4 LINE L1 -3 6153 6028 601 288 133 89 chr4_random 7588349 7588435 -11263378 + L2 LINE L2 2079 2160 -1154 1379 132 46 0 chr4_random 7588435 7588654 -11263159 - MER30 DNA MER1_type -1 229 1 601 288 133 89 chr4_random 7588654 7589219 -11262594 + L2 LINE L2 2160 2759 -555 261 353 69 0 chr4_random 7589229 7589331 -11262482 + L2 LINE L2 3186 3294 -19 327 288 250 0 chr4_random 7589507 7589639 -11262174 + MER5A DNA MER1_type 18 182 -7 296 45 23 0 chr4_random 7590103 7590147 -11261666 + MADE1 DNA Mariner 34 78 -2 206 79 0 26 chr4_random 7590175 7590213 -11261600 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 191 241 76 25 chr4_random 7590917 7590996 -11260817 - MIR SINE MIR -68 194 112 865 140 18 126 chr4_random 7591068 7591119 -11260694 + L1MB4 LINE L1 5451 5506 -674 1491 119 69 89 chr4_random 7591119 7591422 -11260391 + AluSx SINE Alu 1 297 -15 865 140 18 126 chr4_random 7591422 7591676 -11260137 + L1MB4 LINE L1 5506 5700 -480 386 226 0 0 chr4_random 7591696 7591780 -11260033 - 7SLRNA srpRNA srpRNA -7 313 230 1248 231 8 0 chr4_random 7592002 7592258 -11259555 - 7SLRNA srpRNA srpRNA -60 260 3 1859 184 35 13 chr4_random 7592259 7592695 -11259118 + L1MB4 LINE L1 5685 6119 -61 10550 167 19 12 chr4_random 7593593 7593774 -11258039 - Ricksha DNA DNA -15 3231 3053 2141 124 0 0 chr4_random 7593774 7594072 -11257741 + AluY SINE Alu 1 298 -13 10550 167 19 12 chr4_random 7594072 7595980 -11255833 - Ricksha DNA DNA -193 3053 1189 1589 160 3 0 chr4_random 7595982 7596264 -11255549 - Ricksha DNA DNA -2745 501 219 710 165 0 0 chr4_random 7596310 7596419 -11255394 + FLAM_C SINE Alu 3 111 -32 2479 112 19 19 chr4_random 7596420 7596795 -11255018 + THE1C LTR MaLR 1 375 0 9257 134 40 6 chr4_random 7596795 7598323 -11253490 + THE1C-int LTR MaLR 1 1580 0 2031 125 96 6 chr4_random 7598323 7598667 -11253146 + THE1C LTR MaLR 1 375 0 511 167 0 0 chr4_random 7598688 7598778 -11253035 - Ricksha DNA DNA -1950 96 7 261 220 0 0 chr4_random 7599356 7599406 -11252407 - MER63 DNA MER1_type -335 726 677 399 270 209 11 chr4_random 7599507 7599759 -11252054 + L2 LINE L2 2763 3048 -265 249 261 0 0 chr4_random 7599762 7599827 -11251986 - MLT1E2 LTR MaLR 0 626 562 927 189 83 30 chr4_random 7599831 7600095 -11251718 - MLT1D LTR MaLR -158 347 70 530 297 25 51 chr4_random 7600134 7600410 -11251403 + L2 LINE L2 3045 3313 0 666 232 0 0 chr4_random 7600626 7600751 -11251062 - FLAM_C SINE Alu -18 125 1 207 69 0 0 chr4_random 7601047 7601076 -11250737 + (T)n Simple_repeat Simple_repeat 1 29 0 294 29 0 0 chr4_random 7602460 7602495 -11249318 + (TC)n Simple_repeat Simple_repeat 2 36 0 279 0 0 0 chr4_random 7602494 7602525 -11249288 + (TG)n Simple_repeat Simple_repeat 2 32 0 * 190 256 6 6 chr4_random 7604955 7605044 -11246769 - L2 LINE L2 -220 3052 2973 243 358 20 20 chr4_random 7606498 7606646 -11245167 + L2 LINE L2 2694 2841 -473 1490 282 150 40 chr4_random 7607402 7607908 -11243905 + L2 LINE L2 2166 2783 -530 1740 126 4 0 chr4_random 7607908 7608155 -11243658 - AluSx SINE Alu -7 305 58 1490 282 150 40 chr4_random 7608155 7608406 -11243407 + L2 LINE L2 2783 3005 -308 2180 64 0 0 chr4_random 7608424 7608705 -11243108 - L1PA4 LINE L1 -3 6152 5872 11532 60 5 0 chr4_random 7608805 7610407 -11241406 - L1P LINE L1 -2569 3577 1968 16831 55 6 0 chr4_random 7610693 7613644 -11238169 - L1PA3 LINE L1 0 6155 3199 13596 82 28 0 chr4_random 7613646 7615572 -11236241 - L1P LINE L1 -4167 1979 1 362 264 14 14 chr4_random 7615581 7615721 -11236092 - L1M3 LINE L1 -364 5816 5677 1297 179 0 0 chr4_random 7615790 7615991 -11235822 + AluJb SINE Alu 3 203 -109 6473 205 55 13 chr4_random 7615991 7616770 -11235043 - L1P LINE L1 -736 5425 4680 1822 145 21 0 chr4_random 7616770 7617052 -11234761 - AluSc SINE Alu -21 288 1 6473 205 55 13 chr4_random 7617052 7617935 -11233878 - L1P LINE L1 -1481 4680 3697 1220 132 11 0 chr4_random 7617936 7618125 -11233688 - AluY SINE Alu 0 311 121 1443 191 12 27 chr4_random 7618125 7618461 -11233352 - L1P LINE L1 -2463 3683 3353 1186 275 34 31 chr4_random 7618515 7619221 -11232592 - L1M3 LINE L1 -1131 5015 4308 1371 147 5 0 chr4_random 7619440 7619644 -11232169 + AluSq SINE Alu 1 205 -108 985 312 36 32 chr4_random 7619826 7620268 -11231545 + LTR40a LTR ERVL 72 515 -4 617 200 7 26 chr4_random 7620557 7620712 -11231101 - ALR/Alpha Satellite centromeric -20 152 1 * 1136 137 6 0 chr4_random 7620576 7622317 -11229496 - ALR/Alpha Satellite centromeric 0 1750 1 1129 161 2 0 chr4_random 7622420 7628937 -11222876 + ALR/Alpha Satellite centromeric 1 6529 -74 28890 61 4 1 chr4_random 7628946 7635077 -11216736 + L1PA3 LINE L1 9 6152 -3 1174 162 4 1 chr4_random 7635094 7649250 -11202563 + ALR/Alpha Satellite centromeric 1 14200 -2 3478 50 0 0 chr4_random 7649250 7649686 -11202127 - L1PA3 LINE L1 0 6155 5720 1165 158 4 1 chr4_random 7649695 7655132 -11196681 + ALR/Alpha Satellite centromeric 1 5453 -13 1155 168 6 2 chr4_random 7655145 7656228 -11195585 + ALR/Alpha Satellite centromeric 1 1078 -17945 198 0 0 0 chr4_random 7656228 7656250 -11195563 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 6815 50 0 0 chr4_random 7656250 7657115 -11194698 + L1PA3 LINE L1 5310 6174 0 1155 168 6 2 chr4_random 7657115 7674023 -11177790 + ALR/Alpha Satellite centromeric 1077 18956 -67 6396 47 0 0 chr4_random 7674023 7674807 -11177006 - L1PA3 LINE L1 0 6155 5372 * 21897 44 2 0 chr4_random 7674804 7677556 -11174257 + L1PA3 LINE L1 2597 5352 -794 1192 180 3 1 chr4_random 7677556 7682391 -11169422 + ALR/Alpha Satellite centromeric 1 4840 -3 1097 167 3 2 chr4_random 7682402 7688023 -11163790 + ALR/Alpha Satellite centromeric 1 5631 -10 1163 165 2 1 chr4_random 7688035 7706955 -11144858 + ALR/Alpha Satellite centromeric 1 19819 -2925 7070 41 2 0 chr4_random 7706955 7707824 -11143989 + L1PA3 LINE L1 5282 6152 -3 1163 165 2 1 chr4_random 7707824 7710708 -11141105 + ALR/Alpha Satellite centromeric 19819 22698 -46 232 316 0 13 chr4_random 7910775 7910854 -10940959 - L1MEd LINE L1 -4891 1228 1151 330 236 91 55 chr4_random 7911178 7911343 -10940470 - L1MC2 LINE L1 -16 6328 6158 1568 201 41 9 chr4_random 7911343 7911681 -10940132 + MLT1A1 LTR MaLR 1 349 -16 180 0 0 0 chr4_random 7911681 7911701 -10940112 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 251 182 45 0 chr4_random 7911702 7911768 -10940045 - L1MC1 LINE L1 -173 6160 6092 2362 186 23 13 chr4_random 7911887 7912658 -10939155 - L1MC1 LINE L1 -682 5651 4869 1691 193 61 15 chr4_random 7913247 7913640 -10938173 - MLT2D LTR ERVL -3 411 1 373 145 16 0 chr4_random 7913640 7913702 -10938111 - ERVL-D LTR ERVL -7 5757 5695 1794 197 17 14 chr4_random 7913711 7914071 -10937742 - ERVL-D LTR ERVL -348 5416 5056 11388 45 5 15 chr4_random 7914171 7916188 -10935625 - L1PA5 LINE L1 -212 5942 3950 330 138 0 0 chr4_random 7916382 7916440 -10935373 + (CA)n Simple_repeat Simple_repeat 1 58 0 259 287 107 25 chr4_random 7917380 7917502 -10934311 - L2 LINE L2 -497 2817 2686 186 298 0 0 chr4_random 7917651 7917698 -10934115 - MER5A DNA MER1_type -6 183 137 2010 143 10 0 chr4_random 7918887 7919187 -10932626 - AluSq SINE Alu -10 303 1 31 44 0 0 chr4_random 7919198 7919243 -10932570 + AT_rich Low_complexity Low_complexity 1 45 0 799 318 77 43 chr4_random 7920118 7920993 -10930820 - HAL1 LINE L1 -2 2505 1602 33 25 0 0 chr4_random 7921240 7921280 -10930533 + AT_rich Low_complexity Low_complexity 1 40 0 1042 279 78 34 chr4_random 7922031 7922682 -10929131 + L1ME4a LINE L1 5376 6073 -48 24 0 0 0 chr4_random 7922701 7922725 -10929088 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr4_random 7923075 7923113 -10928700 + AT_rich Low_complexity Low_complexity 1 38 0 382 253 0 0 chr4_random 7924342 7924429 -10927384 + L2 LINE L2 606 692 -2622 306 338 113 31 chr4_random 7924448 7924670 -10927143 - MIR SINE MIR -9 253 14 23 78 0 0 chr4_random 7924759 7924810 -10927003 + AT_rich Low_complexity Low_complexity 1 51 0 536 257 76 12 chr4_random 7924907 7925078 -10926735 + MIR SINE MIR 49 230 -32 22 0 0 0 chr4_random 7925103 7925125 -10926688 + AT_rich Low_complexity Low_complexity 1 22 0 360 289 79 47 chr4_random 7925271 7925461 -10926352 + L2 LINE L2 39 234 -3080 663 314 160 21 chr4_random 7925464 7925852 -10925961 + LTR33 LTR ERVL 26 467 -54 206 347 58 16 chr4_random 7925887 7926008 -10925805 + L2 LINE L2 1157 1282 -2032 22 0 0 0 chr4_random 7926302 7926324 -10925489 + AT_rich Low_complexity Low_complexity 1 22 0 222 256 306 12 chr4_random 7926745 7926905 -10924908 + L2 LINE L2 1326 1532 -1782 959 315 36 34 chr4_random 7926920 7927565 -10924248 + MER20B DNA MER1_type 62 707 -76 617 298 32 0 chr4_random 7928083 7928271 -10923542 + MIR SINE MIR 66 259 -3 768 164 0 0 chr4_random 7930543 7930677 -10921136 - AluSc SINE Alu -8 301 168 378 57 0 0 chr4_random 7930930 7930983 -10920830 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1953 120 4 4 chr4_random 7930985 7931261 -10920552 - AluSc SINE Alu -33 276 1 2144 88 67 0 chr4_random 7931313 7931641 -10920172 - L1PA13 LINE L1 -3 6160 5811 794 108 8 0 chr4_random 7931641 7931761 -10920052 + L1PA13 LINE L1 5688 5808 -360 27 29 0 0 chr4_random 7932469 7932503 -10919310 + AT_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr4_random 7932940 7932978 -10918835 + AT_rich Low_complexity Low_complexity 1 38 0 1611 253 138 26 chr4_random 7933581 7934119 -10917694 + MLT1E2 LTR MaLR 29 626 0 23 0 0 0 chr4_random 7934437 7934460 -10917353 + AT_rich Low_complexity Low_complexity 1 23 0 1455 172 15 120 chr4_random 7934768 7935176 -10916637 - MLT1A1 LTR MaLR 0 365 1 1377 264 77 36 chr4_random 7935381 7935877 -10915936 - LTR40a LTR ERVL -3 516 1 804 215 13 0 chr4_random 7935886 7936035 -10915778 - HERVL40 LTR ERVL -9 5521 5371 438 286 30 30 chr4_random 7936037 7936205 -10915608 - HERVL40 LTR ERVL -87 2950 2783 901 251 165 57 chr4_random 7936467 7936907 -10914906 - MLT1D LTR MaLR 0 654 8 1523 276 66 43 chr4_random 7937532 7938145 -10913668 - HERVL40 LTR ERVL -692 4660 2036 310 293 0 0 chr4_random 7938653 7938735 -10913078 - MER5A DNA MER1_type -98 91 10 246 160 0 40 chr4_random 7938802 7938852 -10912961 - MLT2B3 LTR ERVL 0 554 507 366 147 0 0 chr4_random 7938860 7938928 -10912885 + (CATA)n Simple_repeat Simple_repeat 2 69 0 1401 235 56 42 chr4_random 7938928 7939160 -10912653 - MLT2B3 LTR ERVL -40 514 274 2143 137 0 0 chr4_random 7939160 7939467 -10912346 + AluSg SINE Alu 1 307 -3 1401 235 56 42 chr4_random 7939467 7939592 -10912221 - MLT2B3 LTR ERVL -280 274 152 1572 205 104 32 chr4_random 7939831 7940236 -10911577 + Tigger2a DNA MER2_type 1 434 0 6976 200 119 9 chr4_random 7940313 7941886 -10909927 + MER52A LTR ERV1 1 1746 -9 246 143 0 0 chr4_random 7943024 7943073 -10908740 + (CA)n Simple_repeat Simple_repeat 2 50 0 1584 249 50 52 chr4_random 7943624 7944125 -10907688 + MLT2B1 LTR ERVL 1 500 -20 247 191 53 75 chr4_random 7944156 7944250 -10907563 + L1MC4 LINE L1 6612 6703 -1339 459 210 0 0 chr4_random 7944251 7944351 -10907462 + (TA)n Simple_repeat Simple_repeat 1 100 0 245 173 0 3 chr4_random 7944376 7944424 -10907389 + MLT2C1 LTR ERVL 350 413 -1 453 278 0 38 chr4_random 7944904 7945037 -10906776 - L2 LINE L2 -7 3306 3179 214 277 60 24 chr4_random 7945076 7945159 -10906654 + MIR SINE MIR 28 113 -149 196 203 38 25 chr4_random 7946015 7946094 -10905719 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 773 260 97 39 chr4_random 7946127 7946181 -10905632 - MLT2C2 LTR ERVL 0 464 415 669 47 0 0 chr4_random 7946181 7946266 -10905547 + (TAGA)n Simple_repeat Simple_repeat 2 86 0 773 260 97 39 chr4_random 7946266 7946572 -10905241 - MLT2C2 LTR ERVL -49 415 83 333 0 0 0 chr4_random 7946676 7946713 -10905100 + (TG)n Simple_repeat Simple_repeat 2 38 0 1188 258 17 17 chr4_random 7946839 7947126 -10904687 - AluJo SINE Alu -14 288 2 453 19 0 0 chr4_random 7947281 7947335 -10904478 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 38 22 0 0 chr4_random 7947559 7947604 -10904209 + AT_rich Low_complexity Low_complexity 1 45 0 198 250 0 0 chr4_random 7947843 7947883 -10903930 + MIR SINE MIR 213 252 -10 357 157 22 135 chr4_random 7950954 7951043 -10900770 + Charlie3 DNA MER1_type 2628 2706 -4 2049 123 3 10 chr4_random 7951445 7951747 -10900066 + AluSx SINE Alu 1 300 -12 207 0 0 0 chr4_random 7953563 7953586 -10898227 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 393 241 102 0 chr4_random 7954406 7954514 -10897299 - MIR SINE MIR -65 197 79 237 380 63 32 chr4_random 7954524 7954682 -10897131 - MER91A DNA MER1_type -32 164 2 802 255 57 0 chr4_random 7956298 7956510 -10895303 - MIR SINE MIR -21 241 18 822 251 28 19 chr4_random 7956869 7957080 -10894733 + MIR SINE MIR 40 252 -10 294 241 46 19 chr4_random 7958461 7958569 -10893244 - L1ME4a LINE L1 -37 6084 5974 2141 95 0 3 chr4_random 7959788 7960102 -10891711 + AluSq SINE Alu 2 314 0 562 327 135 16 chr4_random 7960379 7960810 -10891003 + L2 LINE L2 1890 2371 -943 1927 115 4 0 chr4_random 7961145 7961415 -10890398 + AluSq SINE Alu 30 300 -13 25 75 0 0 chr4_random 7961653 7961706 -10890107 + AT_rich Low_complexity Low_complexity 1 53 0 5232 240 57 42 chr4_random 7962127 7964271 -10887542 - L1 LINE L1 -2413 5152 3042 994 32 0 59 chr4_random 7964271 7964458 -10887355 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 1852 164 7 0 chr4_random 7964458 7964750 -10887063 - AluSx SINE Alu -18 294 1 5232 240 57 42 chr4_random 7964750 7965332 -10886481 - L1 LINE L1 -4522 3043 2377 511 250 59 71 chr4_random 7966521 7967189 -10884624 - L1M3c LINE L1 -4784 2314 1613 310 360 65 20 chr4_random 7967952 7968105 -10883708 - L1M3c LINE L1 -5981 1117 958 35 71 0 0 chr4_random 7968273 7968343 -10883470 + AT_rich Low_complexity Low_complexity 1 70 0 260 26 0 26 chr4_random 7968693 7968731 -10883082 + (CA)n Simple_repeat Simple_repeat 1 37 0 2009 247 38 8 chr4_random 7968805 7969307 -10882506 + LTR40a LTR ERVL 1 517 -2 25 51 0 0 chr4_random 7970332 7970371 -10881442 + AT_rich Low_complexity Low_complexity 1 39 0 1679 159 86 3 chr4_random 7970373 7970674 -10881139 - MER21B LTR ERV1 -360 503 178 21 0 0 0 chr4_random 7970872 7970893 -10880920 + AT_rich Low_complexity Low_complexity 1 21 0 317 244 73 16 chr4_random 7971154 7971277 -10880536 - L1ME4a LINE L1 -6 6115 5986 5377 191 12 26 chr4_random 7971472 7973695 -10878118 - L1PA16 LINE L1 0 6166 3982 236 203 38 25 chr4_random 7974400 7974479 -10877334 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 351 370 50 20 chr4_random 7974562 7975065 -10876748 - L1ME4a LINE L1 -295 5826 5309 275 294 30 20 chr4_random 7975319 7975516 -10876297 - L1ME4a LINE L1 -2209 3937 3739 1870 206 6 6 chr4_random 7976312 7976677 -10875136 + MLT1A1 LTR MaLR 1 365 0 364 270 48 48 chr4_random 7977874 7977886 -10873927 + L1MC/D LINE L1 5295 5306 -2502 1893 151 3 3 chr4_random 7977886 7978198 -10873615 + AluSq SINE Alu 1 312 0 364 270 48 48 chr4_random 7978198 7978373 -10873440 + L1MC/D LINE L1 5305 5483 -2325 207 0 0 0 chr4_random 7979467 7979490 -10872323 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 249 33 0 0 chr4_random 7979489 7979519 -10872294 + (TG)n Simple_repeat Simple_repeat 2 31 0 1233 203 74 37 chr4_random 7979721 7980046 -10871767 - MER44D DNA MER2_type -1 608 2 204 200 0 0 chr4_random 7980103 7980148 -10871665 + (TA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr4_random 7980555 7980578 -10871235 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr4_random 7981799 7981822 -10869991 + AT_rich Low_complexity Low_complexity 1 23 0 7640 20 0 2 chr4_random 7981827 7983065 -10868748 - L1PA2 LINE L1 0 6155 4917 350 277 62 15 chr4_random 7983157 7983287 -10868526 - MER103 DNA DNA -18 148 13 329 258 16 0 chr4_random 7984122 7984250 -10867563 + (TA)n Simple_repeat Simple_repeat 2 131 0 207 139 0 0 chr4_random 7984272 7984308 -10867505 + (CA)n Simple_repeat Simple_repeat 2 37 0 883 275 27 0 chr4_random 7985022 7985244 -10866569 - MIR SINE MIR -32 230 3 320 125 36 0 chr4_random 7986076 7986132 -10865681 - Ricksha DNA DNA -1142 904 847 2058 237 39 37 chr4_random 7986150 7986661 -10865152 - MLT2B3 LTR ERVL -35 519 8 233 298 24 12 chr4_random 7986821 7986905 -10864908 + GA-rich Low_complexity Low_complexity 3 87 0 490 231 0 0 chr4_random 7986960 7987051 -10864762 - Tigger7 DNA MER2_type 0 2487 2397 7245 182 52 73 chr4_random 7987368 7989103 -10862710 + MER52A LTR ERV1 56 1755 0 391 71 0 0 chr4_random 7989108 7989164 -10862649 - Tigger7 DNA MER2_type -93 2394 2339 * 1449 240 72 0 chr4_random 7989159 7989480 -10862333 - Tigger7 DNA MER2_type -2143 344 1 371 246 63 42 chr4_random 7989742 7989884 -10861929 + MIR SINE MIR 88 232 -30 2138 151 97 39 chr4_random 7989896 7990360 -10861453 + Tigger3b DNA MER2_type 92 582 -649 572 233 17 0 chr4_random 7990367 7990487 -10861326 + FLAM_C SINE Alu 9 130 -13 1976 118 39 22 chr4_random 7990490 7990845 -10860968 + Tigger3b DNA MER2_type 598 958 -273 943 251 0 0 chr4_random 7990845 7991068 -10860745 - L1P LINE L1 -864 5282 5060 * 5381 128 16 6 chr4_random 7991061 7991900 -10859913 + L1PA15 LINE L1 5319 6165 0 1684 139 59 3 chr4_random 7991906 7992193 -10859620 + Tigger3b DNA MER2_type 929 1231 0 28 109 0 0 chr4_random 7992193 7992312 -10859501 + AT_rich Low_complexity Low_complexity 1 119 0 25 75 0 0 chr4_random 7992518 7992571 -10859242 + AT_rich Low_complexity Low_complexity 1 53 0 2954 235 25 63 chr4_random 7992571 7993379 -10858434 - L1MD2 LINE L1 -24 6335 5573 1327 186 42 39 chr4_random 7993379 7993690 -10858123 + AluJb SINE Alu 1 312 0 2954 235 25 63 chr4_random 7993690 7993910 -10857903 - L1MD2 LINE L1 -786 5573 5346 269 123 18 70 chr4_random 7994031 7994088 -10857725 + MLT1H LTR MaLR 489 542 -7 21 36 0 0 chr4_random 7994334 7994362 -10857451 + AT_rich Low_complexity Low_complexity 1 28 0 25 95 0 0 chr4_random 7994924 7994998 -10856815 + AT_rich Low_complexity Low_complexity 1 74 0 203 143 0 24 chr4_random 7996388 7996430 -10855383 + (TTC)n Simple_repeat Simple_repeat 2 42 0 634 318 54 30 chr4_random 7996766 7997099 -10854714 + L2 LINE L2 2949 3289 -24 22 0 0 0 chr4_random 7998118 7998140 -10853673 + AT_rich Low_complexity Low_complexity 1 22 0 309 26 0 0 chr4_random 7998733 7998771 -10853042 + (TG)n Simple_repeat Simple_repeat 1 38 0 311 188 71 0 chr4_random 7998815 7998927 -10852886 + (TA)n Simple_repeat Simple_repeat 1 120 0 304 239 104 22 chr4_random 7998931 7999065 -10852748 + L1MCa LINE L1 1933 2077 -4349 323 336 78 34 chr4_random 7999204 7999472 -10852341 - L2 LINE L2 -223 3090 2811 1605 208 112 12 chr4_random 7999783 8000201 -10851612 - MLT1C LTR MaLR -7 460 1 577 300 55 23 chr4_random 8000201 8000421 -10851392 + L2 LINE L2 1840 2066 -1248 15344 28 3 0 chr4_random 8000464 8003056 -10848757 - L1PA2 LINE L1 -1 6154 3558 6817 194 17 2 chr4_random 8003157 8004376 -10847437 - ERVL LTR ERVL -1321 4443 3207 1029 224 60 15 chr4_random 8004387 8004655 -10847158 - MLT2D LTR ERVL -134 280 1 22 0 0 0 chr4_random 8004870 8004892 -10846921 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4_random 8005016 8005054 -10846759 + AT_rich Low_complexity Low_complexity 1 38 0 35442 41 31 2 chr4_random 8005376 8009819 -10841994 - L1P LINE L1 -1550 4596 25 2223 128 0 0 chr4_random 8009853 8010165 -10841648 + AluSx SINE Alu 1 312 0 1811 327 81 33 chr4_random 8010177 8010928 -10840885 + L2 LINE L2 2128 2952 -361 654 213 190 6 chr4_random 8010928 8011102 -10840711 - MER6B DNA MER2_type -1 209 4 1811 327 81 33 chr4_random 8011102 8011478 -10840335 + L2 LINE L2 2952 3309 -4 25 83 0 0 chr4_random 8011843 8011903 -10839910 + AT_rich Low_complexity Low_complexity 1 60 0 1787 106 16 81 chr4_random 8012178 8012331 -10839482 + AluSg SINE Alu 3 126 -184 237 33 0 0 chr4_random 8012331 8012361 -10839452 + (CTAAA)n Simple_repeat Simple_repeat 1 30 0 1787 106 16 81 chr4_random 8012361 8012528 -10839285 + AluSg SINE Alu 126 302 -8 23 54 0 0 chr4_random 8013285 8013322 -10838491 + AT_rich Low_complexity Low_complexity 1 37 0 26 50 0 0 chr4_random 8013596 8013636 -10838177 + AT_rich Low_complexity Low_complexity 1 40 0 183 42 0 0 chr4_random 8014028 8014052 -10837761 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1756 133 0 0 chr4_random 8014054 8014309 -10837504 - AluSg SINE Alu -20 290 36 189 74 0 0 chr4_random 8014309 8014336 -10837477 + (T)n Simple_repeat Simple_repeat 1 27 0 227 321 124 52 chr4_random 8014680 8014873 -10836940 + MIR SINE MIR 34 240 -22 1936 147 0 3 chr4_random 8015090 8015397 -10836416 + AluSq SINE Alu 1 306 -7 225 269 30 0 chr4_random 8017029 8017096 -10834717 + L2 LINE L2 2232 2300 -1014 249 339 54 0 chr4_random 8017119 8017231 -10834582 + L2 LINE L2 2444 2561 -753 364 182 11 80 chr4_random 8017261 8017340 -10834473 + MLT1D LTR MaLR 1 73 -553 1170 205 169 19 chr4_random 8017340 8017759 -10834054 - LTR54B LTR ERV1 -2 496 15 1215 231 63 82 chr4_random 8017771 8018227 -10833586 + MLT1D LTR MaLR 73 505 0 861 346 55 23 chr4_random 8018240 8018937 -10832876 + L2 LINE L2 2592 3313 0 549 304 86 9 chr4_random 8019350 8019570 -10832243 + MIR SINE MIR 24 260 -2 2029 141 3 0 chr4_random 8019667 8019964 -10831849 + AluSx SINE Alu 3 300 -12 36 40 0 0 chr4_random 8019969 8020019 -10831794 + AT_rich Low_complexity Low_complexity 1 50 0 24 67 0 0 chr4_random 8022787 8022832 -10828981 + AT_rich Low_complexity Low_complexity 1 45 0 18699 36 0 0 chr4_random 8023497 8025794 -10826019 - L1P LINE L1 -1823 4323 2027 9094 29 1 1 chr4_random 8025794 8027662 -10824151 + L1PA3 LINE L1 4286 6155 0 505 234 9 19 chr4_random 8029412 8029519 -10822294 + MER2 DNA MER2_type 1 106 -239 542 157 0 0 chr4_random 8029813 8029902 -10821911 + MER2 DNA MER2_type 120 208 -137 22 0 0 0 chr4_random 8029945 8029967 -10821846 + AT_rich Low_complexity Low_complexity 1 22 0 180 333 94 41 chr4_random 8030030 8030201 -10821612 + L2 LINE L2 2715 2894 -420 5086 255 43 76 chr4_random 8030207 8032160 -10819653 - L1M2 LINE L1 -4474 1877 11 268 299 14 56 chr4_random 8032320 8032464 -10819349 - L1M2 LINE L1 -686 5626 5489 306 295 58 0 chr4_random 8032633 8032772 -10819041 - L1M4 LINE L1 -913 5233 5087 31 44 0 0 chr4_random 8032780 8032825 -10818988 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr4_random 8032843 8032868 -10818945 + AT_rich Low_complexity Low_complexity 1 25 0 302 250 87 29 chr4_random 8035010 8035114 -10816699 + L1M4 LINE L1 3543 3652 -2494 1842 134 18 7 chr4_random 8035123 8035575 -10816238 + AluSg SINE Alu 11 465 0 1363 282 40 17 chr4_random 8035604 8036008 -10815805 - LTR40a LTR ERVL -97 422 10 340 182 0 0 chr4_random 8036054 8036109 -10815704 - LTR40a LTR ERVL -453 66 12 459 92 0 0 chr4_random 8036110 8036175 -10815638 + (TA)n Simple_repeat Simple_repeat 1 65 0 2296 81 0 0 chr4_random 8036177 8036474 -10815339 - AluY SINE Alu -14 297 1 2828 102 86 9 chr4_random 8036502 8036923 -10814890 + MLT2A2 LTR ERVL 1 453 0 228 307 95 32 chr4_random 8036929 8037118 -10814695 + L1M4 LINE L1 4744 4944 -1202 298 310 26 0 chr4_random 8037119 8037232 -10814581 + (TA)n Simple_repeat Simple_repeat 1 116 0 255 189 0 0 chr4_random 8037271 8037324 -10814489 + (TA)n Simple_repeat Simple_repeat 1 53 0 26 30 0 0 chr4_random 8037359 8037392 -10814421 + AT_rich Low_complexity Low_complexity 1 33 0 1996 134 63 26 chr4_random 8038297 8038648 -10813165 + THE1B LTR MaLR 1 364 0 10194 125 27 3 chr4_random 8038649 8040191 -10811622 + THE1B-int LTR MaLR 2 1580 0 1915 153 57 25 chr4_random 8040191 8040544 -10811269 + THE1B LTR MaLR 1 364 0 241 222 16 0 chr4_random 8040831 8040894 -10810919 + L1M4 LINE L1 4623 4686 -1460 7507 158 18 5 chr4_random 8041635 8042917 -10808896 + HSMAR2 DNA Mariner 3 1301 -1 321 26 0 0 chr4_random 8043629 8043667 -10808146 + (TA)n Simple_repeat Simple_repeat 2 39 0 1459 188 44 30 chr4_random 8043803 8044101 -10807712 + MLT2B3 LTR ERVL 1 302 -252 7046 181 48 8 chr4_random 8044101 8045417 -10806396 + ERVL-B3 LTR ERVL 4390 5757 -7 1711 231 91 31 chr4_random 8045417 8045903 -10805910 + MLT2B3 LTR ERVL 1 515 -39 6108 149 45 7 chr4_random 8045907 8047034 -10804779 - Tigger3b DNA MER2_type 0 1231 62 1476 212 9 3 chr4_random 8047055 8047404 -10804409 - L1MA4 LINE L1 -3 6297 5947 4807 221 57 17 chr4_random 8047414 8047976 -10803837 - L1M1 LINE L1 -2526 5039 4501 1680 174 55 25 chr4_random 8047976 8048337 -10803476 + THE1C LTR MaLR 1 372 -3 8914 141 54 8 chr4_random 8048340 8049851 -10801962 + THE1C-int LTR MaLR 1 1580 0 1899 154 64 14 chr4_random 8049851 8050208 -10801605 + THE1C LTR MaLR 1 375 0 4807 221 57 17 chr4_random 8050208 8051030 -10800783 - L1M1 LINE L1 -3064 4501 3595 3029 259 47 32 chr4_random 8051063 8052341 -10799472 - L1M1 LINE L1 -3939 3626 2324 2154 133 15 0 chr4_random 8052343 8052680 -10799133 - L1PA13 LINE L1 -99 6064 5723 1027 262 68 16 chr4_random 8052680 8053104 -10798709 + L1ME3A LINE L1 5461 5893 -269 1033 106 46 0 chr4_random 8053115 8053266 -10798547 - THE1B-int LTR MaLR -1418 162 5 1536 166 77 40 chr4_random 8053270 8053620 -10798193 - THE1B LTR MaLR 0 364 2 24 32 0 0 chr4_random 8054121 8054152 -10797661 + AT_rich Low_complexity Low_complexity 1 31 0 2688 212 72 12 chr4_random 8057154 8057903 -10793910 + L1 LINE L1 4396 5189 -957 28 29 0 0 chr4_random 8058393 8058428 -10793385 + AT_rich Low_complexity Low_complexity 1 35 0 316 141 40 10 chr4_random 8058490 8058589 -10793224 + (TA)n Simple_repeat Simple_repeat 1 102 0 411 326 158 10 chr4_random 8059889 8060085 -10791728 + MIR SINE MIR 7 231 -31 35 63 0 0 chr4_random 8060792 8060855 -10790958 + AT_rich Low_complexity Low_complexity 1 63 0 30 27 0 0 chr4_random 8061724 8061761 -10790052 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr4_random 8062179 8062203 -10789610 + AT_rich Low_complexity Low_complexity 1 24 0 1514 284 91 14 chr4_random 8062334 8062838 -10788975 + MLT1E LTR MaLR 51 593 0 303 288 27 9 chr4_random 8063137 8063248 -10788565 + L1ME LINE L1 5497 5609 -512 221 220 51 17 chr4_random 8063688 8063747 -10788066 - MIR3 SINE MIR -15 193 133 1772 186 48 3 chr4_random 8063923 8064278 -10787535 - L1MC1 LINE L1 0 6333 5963 1867 240 24 6 chr4_random 8064298 8064806 -10787007 - L1M4 LINE L1 -978 5168 4652 1484 280 41 28 chr4_random 8064826 8065602 -10786211 - L1MCa LINE L1 -2682 3744 2959 980 239 47 4 chr4_random 8065605 8065860 -10785953 + L1MB3 LINE L1 3891 4156 -1990 586 157 10 0 chr4_random 8065900 8066002 -10785811 + L1MB2 LINE L1 5916 6018 -153 4051 207 55 21 chr4_random 8066034 8067984 -10783829 + L1MB3 LINE L1 4152 6180 -3 901 182 30 0 chr4_random 8067991 8068156 -10783657 + L1MB8 LINE L1 5814 5983 -195 * 1046 170 79 0 chr4_random 8068141 8068406 -10783407 - L1MCa LINE L1 -3969 2457 2172 5181 152 63 17 chr4_random 8068410 8069879 -10781934 - L1MA3 LINE L1 0 6305 4770 330 325 26 8 chr4_random 8069879 8069996 -10781817 - MIR SINE MIR -58 204 86 799 162 39 3 chr4_random 8070017 8070190 -10781623 - L1M4 LINE L1 -1371 6194 6020 * 8623 191 40 19 chr4_random 8070187 8070785 -10781028 - L1M4 LINE L1 -1856 5709 5125 216 0 0 0 chr4_random 8070785 8070809 -10781004 + (TG)n Simple_repeat Simple_repeat 2 25 0 8623 191 40 19 chr4_random 8070809 8072795 -10779018 - L1M4 LINE L1 -2440 5125 3073 8260 200 92 17 chr4_random 8072803 8074806 -10777007 - L1MCa LINE L1 -4253 2173 20 1746 207 50 6 chr4_random 8074833 8075176 -10776637 - MLT1A1 LTR MaLR 0 365 8 180 416 19 13 chr4_random 8075343 8075497 -10776316 + MIR SINE MIR 107 261 -1 7086 57 10 5 chr4_random 8075881 8076827 -10774986 - L1PA7 LINE L1 -5 6149 5202 422 276 83 17 chr4_random 8077769 8077950 -10773863 - MIR SINE MIR -50 212 20 23 0 0 0 chr4_random 8078378 8078401 -10773412 + AT_rich Low_complexity Low_complexity 1 23 0 8573 193 33 42 chr4_random 8078475 8080583 -10771230 - L1MA6 LINE L1 -4 6296 4236 306 0 0 0 chr4_random 8080583 8080617 -10771196 + (TA)n Simple_repeat Simple_repeat 1 34 0 8573 193 33 42 chr4_random 8080617 8081572 -10770241 - L1MA6 LINE L1 -2064 4236 3274 2053 129 7 0 chr4_random 8081611 8081906 -10769907 - AluSx SINE Alu -15 297 1 29 28 0 0 chr4_random 8082408 8082444 -10769369 + AT_rich Low_complexity Low_complexity 1 36 0 279 0 0 0 chr4_random 8082574 8082605 -10769208 + (TTTTG)n Simple_repeat Simple_repeat 3 33 0 1926 126 22 0 chr4_random 8082610 8082887 -10768926 - AluSx SINE Alu -27 285 3 21 57 0 0 chr4_random 8083042 8083077 -10768736 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr4_random 8084155 8084197 -10767616 + AT_rich Low_complexity Low_complexity 1 42 0 1476 197 0 35 chr4_random 8084542 8084852 -10766961 + AluJo SINE Alu 4 302 -10 413 268 21 0 chr4_random 8085858 8085955 -10765858 + LTR16A LTR ERVL 248 346 -104 1922 259 6 12 chr4_random 8087708 8088198 -10763615 + L1ME1 LINE L1 5437 5923 -243 1983 119 25 7 chr4_random 8088591 8088877 -10762936 - AluSc SINE Alu -18 291 1 23 33 0 0 chr4_random 8089124 8089154 -10762659 + AT_rich Low_complexity Low_complexity 1 30 0 4033 84 29 0 chr4_random 8089694 8090256 -10761557 - LTR19B LTR ERV1 -2 578 1 23 0 0 0 chr4_random 8090558 8090581 -10761232 + AT_rich Low_complexity Low_complexity 1 23 0 419 227 21 71 chr4_random 8090723 8090864 -10760949 - L1MC4 LINE L1 -5 8037 7904 317 237 205 16 chr4_random 8090946 8091136 -10760677 - L1MC4 LINE L1 -1346 6696 6471 2149 108 7 3 chr4_random 8091166 8091463 -10760350 - AluY SINE Alu -13 298 1 972 72 7 7 chr4_random 8093351 8093490 -10758323 + AluSp/q SINE Alu 175 313 0 528 300 48 35 chr4_random 8093594 8093821 -10757992 - MIR SINE MIR -27 235 6 453 273 21 0 chr4_random 8095172 8095315 -10756498 + L1MEc LINE L1 1323 1468 -4955 594 227 8 8 chr4_random 8095315 8095443 -10756370 + FLAM_C SINE Alu 1 128 -5 47 0 0 0 chr4_random 8095451 8095498 -10756315 + AT_rich Low_complexity Low_complexity 1 47 0 1694 90 43 13 chr4_random 8095499 8095732 -10756081 + AluSc SINE Alu 39 278 -31 11721 181 12 31 chr4_random 8095834 8098158 -10753655 + L1PA15-16 LINE L1 739 2904 -3945 519 95 0 0 chr4_random 8098165 8098239 -10753574 + (TA)n Simple_repeat Simple_repeat 1 74 0 378 169 0 0 chr4_random 8098239 8098304 -10753509 + L1PA16 LINE L1 2445 2509 -4432 221 155 17 0 chr4_random 8098304 8098362 -10753451 + (TA)n Simple_repeat Simple_repeat 2 60 0 8405 207 30 25 chr4_random 8098363 8100175 -10751638 + L1PA16 LINE L1 3016 4817 -2139 2040 130 53 31 chr4_random 8100175 8100530 -10751283 + THE1B LTR MaLR 2 364 0 8405 207 30 25 chr4_random 8100530 8101990 -10749823 + L1PA16 LINE L1 4817 6947 -9 1240 118 43 5 chr4_random 8102025 8102236 -10749577 + L1PA13 LINE L1 5944 6162 -1 230 230 35 23 chr4_random 8102388 8102475 -10749338 + A-rich Low_complexity Low_complexity 3 90 0 246 283 61 75 chr4_random 8102493 8102891 -10748922 + L1MEc LINE L1 2181 2542 -913 1299 261 65 67 chr4_random 8102947 8103457 -10748356 + MLT1E LTR MaLR 19 527 -66 264 298 71 0 chr4_random 8103461 8103545 -10748268 + MLT1E LTR MaLR 488 577 -16 324 316 78 5 chr4_random 8103729 8103922 -10747891 + L1ME3A LINE L1 5587 5793 -377 459 297 109 13 chr4_random 8103943 8104182 -10747631 + L1ME3A LINE L1 5840 6101 -69 285 237 208 35 chr4_random 8105455 8105604 -10746209 + MER5A DNA MER1_type 4 182 -7 893 242 91 20 chr4_random 8105644 8106182 -10745631 - MLT1E1 LTR MaLR -3 651 17 1790 133 88 6 chr4_random 8106182 8106499 -10745314 - MER61A LTR ERV1 0 343 1 18436 103 36 11 chr4_random 8106500 8106548 -10745265 - MER61A-int LTR ERV1 0 5217 5172 2032 99 3 46 chr4_random 8106548 8106871 -10744942 + AluY SINE Alu 3 311 0 18436 103 36 11 chr4_random 8106871 8109571 -10742242 - MER61A-int LTR ERV1 -45 5172 2400 927 106 56 56 chr4_random 8109575 8109755 -10742058 - MER61A-int LTR ERV1 -3630 1587 1408 2205 164 47 25 chr4_random 8109764 8110253 -10741560 - MER61A-int LTR ERV1 -4717 500 1 1771 126 68 12 chr4_random 8110253 8110578 -10741235 - MER61A LTR ERV1 0 343 1 25 51 0 0 chr4_random 8110916 8110955 -10740858 + AT_rich Low_complexity Low_complexity 1 39 0 4020 178 78 11 chr4_random 8112262 8112914 -10738899 + MER4D LTR ERV1 1 609 -170 2508 137 45 6 chr4_random 8112914 8113382 -10738431 - LTR19A LTR ERV1 0 486 1 4020 178 78 11 chr4_random 8113382 8113564 -10738249 + MER4D LTR ERV1 609 777 -2 4235 149 24 7 chr4_random 8114027 8114726 -10737087 - MER50 LTR ERV1 -23 711 1 307 269 138 82 chr4_random 8114935 8115217 -10736596 + MLT1H1-int LTR MaLR 1074 1371 0 292 261 29 0 chr4_random 8115275 8115344 -10736469 + MLT1H1 LTR MaLR 31 101 -454 652 216 0 8 chr4_random 8115379 8115513 -10736300 + FLAM_A SINE Alu 1 133 0 205 88 29 0 chr4_random 8115658 8115692 -10736121 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 225 261 13 121 chr4_random 8116756 8116913 -10734900 - L2 LINE L2 -169 3144 3005 3376 193 16 56 chr4_random 8116942 8117643 -10734170 - MER52A LTR ERV1 0 1755 1083 613 360 161 16 chr4_random 8117694 8118495 -10733318 - L2 LINE L2 -412 2902 1986 912 191 72 167 chr4_random 8118937 8119517 -10732296 + MER97b DNA MER1_type? 71 595 -458 512 212 32 107 chr4_random 8119941 8120286 -10731527 + MER97c DNA MER1_type? 772 1090 0 261 197 0 0 chr4_random 8120528 8120589 -10731224 + (TA)n Simple_repeat Simple_repeat 2 62 0 2114 106 0 3 chr4_random 8120590 8120873 -10730940 - AluSq SINE Alu -31 282 1 1164 325 81 18 chr4_random 8121343 8122425 -10729388 + HERV16 LTR ERVL 1917 3096 -1900 459 318 28 41 chr4_random 8122897 8123215 -10728598 + HERV16 LTR ERVL 3353 3666 -1330 789 344 53 40 chr4_random 8123440 8124063 -10727750 + HERV16 LTR ERVL 4181 4811 -953 1010 326 36 16 chr4_random 8124629 8125016 -10726797 + LTR16A LTR ERVL 25 419 -31 21 0 0 0 chr4_random 8126459 8126480 -10725333 + AT_rich Low_complexity Low_complexity 1 21 0 1835 149 0 40 chr4_random 8126551 8126874 -10724939 - AluSx SINE Alu 0 311 1 1585 202 83 4 chr4_random 8127705 8128248 -10723565 - LTR28 LTR ERV1 0 1020 387 29535 48 40 4 chr4_random 8128347 8129617 -10722196 + L1PA3 LINE L1 13 1236 -4910 187 31 62 0 chr4_random 8129617 8129649 -10722164 + (AAATG)n Simple_repeat Simple_repeat 5 38 0 29535 48 40 4 chr4_random 8129649 8132169 -10719644 + L1PA3 LINE L1 1236 3940 -2206 12767 26 0 0 chr4_random 8134671 8136949 -10714864 + L1PA3 LINE L1 3878 6155 0 491 195 201 0 chr4_random 8136949 8137080 -10714733 - LTR28 LTR ERV1 -873 749 1 626 304 42 14 chr4_random 8137615 8137829 -10713984 - MIR SINE MIR -34 228 9 21 36 0 0 chr4_random 8137939 8137967 -10713846 + AT_rich Low_complexity Low_complexity 1 28 0 1970 298 142 38 chr4_random 8138025 8138664 -10713149 - L2 LINE L2 -304 3009 2438 369 0 0 0 chr4_random 8138664 8138705 -10713108 + (TG)n Simple_repeat Simple_repeat 2 42 0 1970 298 142 38 chr4_random 8138705 8139203 -10712610 - L2 LINE L2 -875 2438 1737 2063 106 4 0 chr4_random 8139975 8140248 -10711565 + AluSc SINE Alu 1 274 -35 1621 60 33 0 chr4_random 8140253 8140468 -10711345 + L1PA5 LINE L1 5930 6151 -3 1449 223 49 67 chr4_random 8140852 8141363 -10710450 + MLT1D LTR MaLR 4 505 0 185 154 26 0 chr4_random 8142757 8142796 -10709017 + GA-rich Low_complexity Low_complexity 1 40 0 855 20 0 0 chr4_random 8143817 8143918 -10707895 + (TTC)n Simple_repeat Simple_repeat 2 102 0 2170 113 0 0 chr4_random 8144065 8144373 -10707440 - AluSx SINE Alu 0 308 1 22 0 0 0 chr4_random 8144373 8144395 -10707418 + AT_rich Low_complexity Low_complexity 1 22 0 225 94 0 0 chr4_random 8144581 8144613 -10707200 + (CA)n Simple_repeat Simple_repeat 1 32 0 1986 226 44 22 chr4_random 8146570 8147118 -10704695 - L1MD3 LINE L1 -12 7983 7424 253 324 7 90 chr4_random 8147266 8147411 -10704402 - L2 LINE L2 -217 3055 2923 21 0 0 0 chr4_random 8148048 8148069 -10703744 + AT_rich Low_complexity Low_complexity 1 21 0 2077 53 0 8 chr4_random 8150025 8150290 -10701523 - L1PA5 LINE L1 0 6154 5892 23 33 0 0 chr4_random 8150613 8150643 -10701170 + AT_rich Low_complexity Low_complexity 1 30 0 429 275 30 30 chr4_random 8151093 8151224 -10700589 - MIR SINE MIR -118 144 14 210 162 0 0 chr4_random 8154774 8154811 -10697002 - MIR SINE MIR -4 258 222 1483 217 0 17 chr4_random 8155280 8155579 -10696234 - AluJo SINE Alu -8 304 11 339 270 122 38 chr4_random 8155616 8155879 -10695934 + L1MC5 LINE L1 7610 7894 -67 1071 229 144 16 chr4_random 8155906 8156211 -10695602 - MSTD LTR MaLR -52 344 1 2871 141 130 2 chr4_random 8156340 8156809 -10695004 + MER1A DNA MER1_type 1 529 0 305 347 129 22 chr4_random 8156949 8157266 -10694547 + L2 LINE L2 2115 2465 -849 1355 91 10 5 chr4_random 8158367 8158565 -10693248 - L1PA5 LINE L1 -1 6153 5955 34 65 0 0 chr4_random 8159010 8159072 -10692741 + AT_rich Low_complexity Low_complexity 1 62 0 878 137 8 0 chr4_random 8159503 8159634 -10692179 + L1MC1 LINE L1 6182 6313 -20 3194 175 21 2 chr4_random 8160282 8160854 -10690959 + L1MC1 LINE L1 5254 5836 -497 * 8099 52 1 5 chr4_random 8160846 8162689 -10689124 + L1PA4 LINE L1 4356 6154 -1 1378 149 48 0 chr4_random 8162689 8162950 -10688863 + L1PA16 LINE L1 5883 6163 -3 905 152 12 6 chr4_random 8162957 8163128 -10688685 + L1MC1 LINE L1 5814 5985 -348 1413 161 24 0 chr4_random 8163148 8163396 -10688417 + L1MC1 LINE L1 6064 6317 -16 213 330 82 0 chr4_random 8163914 8164011 -10687802 - MIR SINE MIR -79 183 79 2217 172 14 45 chr4_random 8164061 8164502 -10687311 + MSTB1 LTR MaLR 5 374 -1 258 32 0 0 chr4_random 8166064 8166095 -10685718 + (TA)n Simple_repeat Simple_repeat 2 32 0 2357 82 0 13 chr4_random 8166095 8166401 -10685412 - AluY SINE Alu -9 302 1 678 239 131 23 chr4_random 8166900 8167051 -10684762 + LTR16A1 LTR ERVL 171 304 -153 2441 149 26 14 chr4_random 8167051 8167474 -10684339 + MSTA LTR MaLR 1 428 0 678 239 131 23 chr4_random 8167474 8167581 -10684232 + LTR16A1 LTR ERVL 304 457 0 22 0 0 0 chr4_random 8167603 8167625 -10684188 + AT_rich Low_complexity Low_complexity 1 22 0 1676 206 34 75 chr4_random 8168065 8168559 -10683254 - MLT1D LTR MaLR -8 497 24 21 0 0 0 chr4_random 8168599 8168620 -10683193 + AT_rich Low_complexity Low_complexity 1 21 0 949 191 15 20 chr4_random 8168847 8169046 -10682767 + MLT1D LTR MaLR 300 497 -8 1294 282 89 9 chr4_random 8171039 8171500 -10680313 + MLT1D LTR MaLR 6 503 -2 193 140 35 0 chr4_random 8171959 8172016 -10679797 + (TA)n Simple_repeat Simple_repeat 1 59 0 264 234 39 13 chr4_random 8172706 8172757 -10679056 + MIR SINE MIR 183 238 -24 3132 131 19 80 chr4_random 8172757 8173407 -10678406 + MER4B LTR ERV1 1 610 0 264 234 39 13 chr4_random 8173407 8173432 -10678381 + MIR SINE MIR 238 261 -1 185 321 0 0 chr4_random 8173570 8173623 -10678190 + L2 LINE L2 3257 3309 -4 4187 140 45 25 chr4_random 8173745 8174514 -10677299 + LTR1 LTR ERV1 1 785 0 240 202 0 53 chr4_random 8174859 8174953 -10676860 + GA-rich Low_complexity Low_complexity 2 90 0 201 217 0 58 chr4_random 8177671 8177740 -10674073 + A-rich Low_complexity Low_complexity 2 66 0 1856 126 48 0 chr4_random 8178071 8178371 -10673442 - AluSx SINE Alu 0 313 1 23 78 0 0 chr4_random 8178440 8178491 -10673322 + AT_rich Low_complexity Low_complexity 1 51 0 322 230 14 0 chr4_random 8178710 8178784 -10673029 - MLT1K LTR MaLR -5 583 509 251 388 37 48 chr4_random 8178944 8179217 -10672596 - MLT1K LTR MaLR -302 286 17 22 70 0 0 chr4_random 8180433 8180476 -10671337 + AT_rich Low_complexity Low_complexity 1 43 0 207 264 19 19 chr4_random 8180503 8180556 -10671257 + MIR SINE MIR 33 85 -123 22 56 0 0 chr4_random 8180956 8180992 -10670821 + AT_rich Low_complexity Low_complexity 1 36 0 2205 117 0 0 chr4_random 8181051 8181360 -10670453 - AluSc SINE Alu 0 309 1 258 32 0 0 chr4_random 8181682 8181713 -10670100 + (TG)n Simple_repeat Simple_repeat 1 31 0 1090 299 61 6 chr4_random 8182446 8182791 -10669022 + MER70A LTR ERVL 4 367 -105 617 384 55 21 chr4_random 8182892 8183311 -10668502 - L2 LINE L2 -2 3270 2838 35 83 0 0 chr4_random 8184808 8184892 -10666921 + AT_rich Low_complexity Low_complexity 1 84 0 1759 121 82 0 chr4_random 8184942 8185222 -10666591 - AluSq SINE Alu -10 303 1 300 298 83 40 chr4_random 8185235 8185487 -10666326 - L1ME LINE L1 -314 5856 5594 29 60 0 0 chr4_random 8185682 8185732 -10666081 + AT_rich Low_complexity Low_complexity 1 50 0 240 357 0 13 chr4_random 8185870 8186024 -10665789 - L1ME LINE L1 -267 5897 5746 * 2279 293 87 10 chr4_random 8186022 8186813 -10665000 - L1M4b LINE L1 -5624 1235 384 41 36 0 0 chr4_random 8186841 8186896 -10664917 + AT_rich Low_complexity Low_complexity 1 55 0 432 190 76 101 chr4_random 8186896 8187054 -10664759 - L1M4b LINE L1 -6704 155 2 1182 225 58 52 chr4_random 8187109 8187473 -10664340 + MLT1A2 LTR MaLR 2 367 -7 316 310 60 22 chr4_random 8187838 8188022 -10663791 - L1ME2 LINE L1 -243 5921 5731 231 218 0 0 chr4_random 8188262 8188317 -10663496 + T-rich Low_complexity Low_complexity 1 55 0 1491 124 0 0 chr4_random 8188318 8188544 -10663269 - L1PA11 LINE L1 -1 6173 5948 5037 130 15 10 chr4_random 8189123 8189922 -10661891 - L1PA13 LINE L1 -4 6159 5357 22622 38 0 1 chr4_random 8191647 8195207 -10656606 + L1PA4 LINE L1 2592 6152 -3 807 107 0 15 chr4_random 8195478 8195609 -10656204 - L1PA13 LINE L1 -6 6157 6029 512 224 0 8 chr4_random 8195884 8196016 -10655797 - L1MB4 LINE L1 0 6180 6051 1948 167 49 10 chr4_random 8196081 8196471 -10655342 - L1MB2 LINE L1 -132 6039 5635 848 222 35 5 chr4_random 8196514 8196717 -10655096 + L1PA16 LINE L1 5950 6158 -8 809 246 0 0 chr4_random 8196718 8196909 -10654904 + L1 LINE L1 4910 5100 -1046 234 81 0 0 chr4_random 8197489 8197526 -10654287 + (TC)n Simple_repeat Simple_repeat 2 38 0 243 320 31 10 chr4_random 8197937 8198034 -10653779 + MIR SINE MIR 159 257 -5 336 76 30 15 chr4_random 8198242 8198308 -10653505 + (TA)n Simple_repeat Simple_repeat 2 68 0 1834 159 63 27 chr4_random 8198472 8198805 -10653008 + MLT1B LTR MaLR 46 390 0 886 171 29 0 chr4_random 8198845 8199015 -10652798 - L1MB5 LINE L1 -9 6165 5991 2349 247 42 11 chr4_random 8199255 8199825 -10651988 - ERVL LTR ERVL -1847 3917 3330 21 0 0 0 chr4_random 8200334 8200355 -10651458 + AT_rich Low_complexity Low_complexity 1 21 0 441 226 129 32 chr4_random 8201076 8201231 -10650582 - MLT1H1 LTR MaLR 0 555 386 1294 102 41 25 chr4_random 8201535 8201732 -10650081 + AluSp SINE Alu 107 306 -7 23 0 0 0 chr4_random 8201798 8201821 -10649992 + AT_rich Low_complexity Low_complexity 1 23 0 649 319 96 28 chr4_random 8202181 8202535 -10649278 + L3 LINE CR1 1153 1530 -47 1428 191 85 0 chr4_random 8202699 8202971 -10648842 + AluSx SINE Alu 5 299 -13 269 291 219 24 chr4_random 8203586 8203796 -10648017 + Charlie8 DNA MER1_type 35 285 -2132 481 280 78 36 chr4_random 8204332 8204515 -10647298 + MIR SINE MIR 57 250 -12 13440 155 29 6 chr4_random 8204515 8206880 -10644933 - Tigger1 DNA MER2_type 0 2418 1 3244 165 14 2 chr4_random 8206896 8207471 -10644342 - Tigger3b DNA MER2_type -1 1230 649 1107 178 15 15 chr4_random 8207471 8207690 -10644123 + AluJo SINE Alu 86 304 0 3524 164 25 9 chr4_random 8207693 8208339 -10643474 - Tigger3b DNA MER2_type -575 656 1 358 297 36 0 chr4_random 8209356 8209467 -10642346 + MER94 DNA DNA 4 118 -16 22 70 0 0 chr4_random 8210290 8210333 -10641480 + AT_rich Low_complexity Low_complexity 1 43 0 31 58 0 0 chr4_random 8211136 8211188 -10640625 + AT_rich Low_complexity Low_complexity 1 52 0 1759 250 82 44 chr4_random 8213245 8213881 -10637932 - MER76 LTR ERV -27 661 2 31 26 0 0 chr4_random 8214057 8214095 -10637718 + AT_rich Low_complexity Low_complexity 1 38 0 2349 269 37 33 chr4_random 8214213 8215022 -10636791 - L1ME1 LINE L1 -56 6110 5299 1827 169 53 11 chr4_random 8215022 8215382 -10636431 + THE1C LTR MaLR 1 375 0 9060 142 48 12 chr4_random 8215384 8216907 -10634906 + THE1C-int LTR MaLR 3 1580 0 1648 155 63 29 chr4_random 8216912 8217261 -10634552 + THE1C LTR MaLR 15 375 0 380 264 58 19 chr4_random 8217262 8217470 -10634343 - L1ME1 LINE L1 -841 5305 5090 213 94 0 0 chr4_random 8217932 8217964 -10633849 + (TG)n Simple_repeat Simple_repeat 2 33 0 383 85 0 49 chr4_random 8218718 8218800 -10633013 + (TA)n Simple_repeat Simple_repeat 1 78 0 25 70 0 35 chr4_random 8219051 8219137 -10632676 + AT_rich Low_complexity Low_complexity 1 83 0 226 262 0 0 chr4_random 8219623 8219684 -10632129 - MLT1H1 LTR MaLR 0 555 495 255 140 73 15 chr4_random 8219684 8219820 -10631993 + (TA)n Simple_repeat Simple_repeat 1 144 0 206 216 0 0 chr4_random 8219962 8219999 -10631814 + (CA)n Simple_repeat Simple_repeat 2 38 0 32 43 0 0 chr4_random 8220049 8220095 -10631718 + AT_rich Low_complexity Low_complexity 1 46 0 3660 116 11 5 chr4_random 8220462 8221032 -10630781 + L1PA13 LINE L1 5591 6163 0 1900 149 0 0 chr4_random 8221906 8222187 -10629626 + AluSx SINE Alu 1 281 -31 507 51 66 22 chr4_random 8222188 8222325 -10629488 + (TA)n Simple_repeat Simple_repeat 2 144 0 2385 324 121 38 chr4_random 8224046 8225670 -10626143 + L2 LINE L2 50 1808 -1506 438 298 122 46 chr4_random 8225769 8225811 -10626002 + L2 LINE L2 2615 2652 -662 1684 110 41 4 chr4_random 8225811 8226057 -10625756 - AluSg SINE Alu -10 300 46 438 298 122 46 chr4_random 8226057 8226276 -10625537 + L2 LINE L2 2652 2896 -418 246 314 81 0 chr4_random 8226544 8226630 -10625183 + L2 LINE L2 3219 3311 -2 22 0 0 0 chr4_random 8226951 8226973 -10624840 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr4_random 8227077 8227104 -10624709 + (A)n Simple_repeat Simple_repeat 1 27 0 278 50 25 0 chr4_random 8227787 8227827 -10623986 + (TA)n Simple_repeat Simple_repeat 1 41 0 249 246 0 0 chr4_random 8228008 8228065 -10623748 + CT-rich Low_complexity Low_complexity 2 58 0 419 363 20 10 chr4_random 8228092 8228296 -10623517 + MIR SINE MIR 57 262 0 20046 92 19 15 chr4_random 8228314 8231326 -10620487 - MER61A-int LTR ERV1 -830 4387 1320 3000 180 87 34 chr4_random 8231319 8232057 -10619756 - MER61A-int LTR ERV1 -4440 777 1 * 1749 181 39 3 chr4_random 8232058 8232389 -10619424 - MER61A LTR ERV1 0 343 1 217 257 29 105 chr4_random 8232552 8232657 -10619156 - L2 LINE L2 -25 3247 3151 22 35 0 0 chr4_random 8232774 8232803 -10619010 + AT_rich Low_complexity Low_complexity 1 29 0 247 299 103 9 chr4_random 8232847 8232954 -10618859 - MIR SINE MIR -82 180 64 462 254 98 130 chr4_random 8233266 8233743 -10618070 - LTR40a LTR ERVL -57 462 1 2352 179 19 12 chr4_random 8234176 8234605 -10617208 + MSTB1 LTR MaLR 1 432 0 269 383 62 0 chr4_random 8235846 8236008 -10615805 + MIR3 SINE MIR 33 204 -4 207 250 0 0 chr4_random 8236100 8236144 -10615669 - L2 LINE L2 -5 3308 3265 202 204 148 0 chr4_random 8236349 8236403 -10615410 - L2 LINE L2 -3 3310 3249 279 260 26 0 chr4_random 8236430 8236507 -10615306 + L2 LINE L2 2933 3011 -302 792 306 26 26 chr4_random 8236538 8236881 -10614932 - L2 LINE L2 -820 2494 2152 302 249 184 16 chr4_random 8237723 8237908 -10613905 + L1MC/D LINE L1 5377 5592 -2193 270 275 44 0 chr4_random 8237894 8237985 -10613828 + L1P4 LINE L1 5622 5716 -449 * 250 340 57 25 chr4_random 8238384 8238543 -10613270 - L2 LINE L2 -1077 2237 2074 415 283 76 96 chr4_random 8238548 8238805 -10613008 - MIR SINE MIR -7 255 3 185 260 135 10 chr4_random 8238805 8238901 -10612912 - L2 LINE L2 -1268 2046 1939 797 284 22 14 chr4_random 8240145 8240367 -10611446 + MIR SINE MIR 5 228 -34 22 0 0 0 chr4_random 8240954 8240976 -10610837 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4_random 8241700 8241722 -10610091 + AT_rich Low_complexity Low_complexity 1 22 0 55 83 0 0 chr4_random 8241866 8241998 -10609815 + AT_rich Low_complexity Low_complexity 1 132 0 511 252 60 9 chr4_random 8242264 8242482 -10609331 + MER114 LTR ERV 13 241 -407 216 333 0 50 chr4_random 8242771 8242891 -10608922 + MIR SINE MIR 139 252 -10 27 73 0 0 chr4_random 8243083 8243138 -10608675 + AT_rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr4_random 8245227 8245262 -10606551 + AT_rich Low_complexity Low_complexity 1 35 0 842 158 95 13 chr4_random 8245435 8245593 -10606220 + AluJb SINE Alu 109 279 -33 180 0 0 0 chr4_random 8245594 8245614 -10606199 + (GA)n Simple_repeat Simple_repeat 1 20 0 1585 193 9 15 chr4_random 8245780 8246122 -10605691 - L1MB1 LINE L1 0 6168 5829 2883 86 28 2 chr4_random 8246122 8246510 -10605303 + MLT2A1 LTR ERVL 1 467 -53 225 0 0 0 chr4_random 8246510 8246535 -10605278 + (TG)n Simple_repeat Simple_repeat 2 26 0 2883 86 28 2 chr4_random 8246535 8246549 -10605264 + MLT2A1 LTR ERVL 467 479 -41 408 137 59 0 chr4_random 8246557 8246710 -10605103 + (TA)n Simple_repeat Simple_repeat 1 162 0 361 50 0 0 chr4_random 8246710 8246765 -10605048 + MLT2A1 LTR ERVL 399 444 0 1727 226 16 14 chr4_random 8246767 8247197 -10604616 - L1MB1 LINE L1 -337 5831 5401 845 335 152 0 chr4_random 8247202 8247567 -10604246 - MSTB LTR MaLR -4 453 1 978 226 73 5 chr4_random 8247568 8247856 -10603957 - L1 LINE L1 -743 5227 4922 1850 247 98 29 chr4_random 8247913 8248525 -10603288 + MER50 LTR ERV1 76 729 -5 862 194 54 172 chr4_random 8248532 8248917 -10602896 - L1 LINE L1 -1038 4932 4610 2106 137 0 0 chr4_random 8248917 8249223 -10602590 - AluSg SINE Alu -4 306 1 862 194 54 172 chr4_random 8249223 8249302 -10602511 - L1 LINE L1 -1360 4610 4523 514 172 30 0 chr4_random 8249302 8249401 -10602412 + MLT1A2 LTR MaLR 1 102 -272 2580 229 71 84 chr4_random 8249402 8250278 -10601535 + MLT-int LTR MaLR 236 1099 -636 1911 201 19 6 chr4_random 8250281 8250645 -10601168 + MLT1A1-int LTR MaLR 1367 1735 0 1055 210 23 39 chr4_random 8250705 8250962 -10600851 + MLT1A1 LTR MaLR 113 365 0 5104 227 60 14 chr4_random 8250962 8252374 -10599439 - L1 LINE L1 -1443 4527 3052 2765 155 10 43 chr4_random 8252384 8252964 -10598849 + L1 LINE L1 4534 5094 -1052 435 284 47 16 chr4_random 8253005 8253195 -10598618 - L1 LINE L1 -5694 197 2 735 245 28 28 chr4_random 8253712 8253924 -10597889 + MER20 DNA MER1_type 3 214 -5 22 56 0 0 chr4_random 8255828 8255864 -10595949 + AT_rich Low_complexity Low_complexity 1 36 0 232 214 103 16 chr4_random 8255948 8256074 -10595739 - L1MC4 LINE L1 -209 7833 7697 21 57 0 0 chr4_random 8256167 8256202 -10595611 + AT_rich Low_complexity Low_complexity 1 35 0 46 62 0 0 chr4_random 8258598 8258679 -10593134 + AT_rich Low_complexity Low_complexity 1 81 0 23 0 0 0 chr4_random 8258959 8258982 -10592831 + AT_rich Low_complexity Low_complexity 1 23 0 287 130 19 0 chr4_random 8259156 8259210 -10592603 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 228 163 23 0 chr4_random 8259756 8259799 -10592014 + (CA)n Simple_repeat Simple_repeat 2 45 0 330 292 19 43 chr4_random 8259889 8260050 -10591763 - HAL1 LINE L1 -369 2138 1982 9293 178 17 3 chr4_random 8260153 8262738 -10589075 - L1PA13 LINE L1 -8 6155 3544 1920 139 0 0 chr4_random 8312738 8313026 -10538787 - Tigger1 DNA MER2_type -578 1840 1553 356 68 0 0 chr4_random 8313126 8313170 -10538643 - LTR17 LTR ERV1 -736 44 1 34 55 0 0 chr4_random 8313378 8313433 -10538380 + AT_rich Low_complexity Low_complexity 1 55 0 2237 122 55 17 chr4_random 8313606 8313968 -10537845 + MER51B LTR ERV1 2 377 0 2196 136 66 58 chr4_random 8313968 8314395 -10537418 + MER51B-int LTR ERV1 1 430 -7386 2887 181 32 0 chr4_random 8314504 8315041 -10536772 + Tigger1 DNA MER2_type 1864 2417 -1 186 43 0 0 chr4_random 8315088 8315111 -10536702 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 381 281 0 0 chr4_random 8318051 8318147 -10533666 + MER5A DNA MER1_type 11 106 -83 1633 192 27 40 chr4_random 8318218 8318588 -10533225 + MLT1A1 LTR MaLR 1 365 0 25 75 0 0 chr4_random 8318853 8318906 -10532907 + AT_rich Low_complexity Low_complexity 1 53 0 1400 230 21 45 chr4_random 8318961 8319335 -10532478 - MLT1A1 LTR MaLR 0 365 1 2151 210 14 2 chr4_random 8319335 8319764 -10532049 - MLT1A1-int LTR MaLR -1 1734 1301 354 322 11 0 chr4_random 8319764 8319854 -10531959 - MLT1A1-int LTR MaLR -389 1346 1256 795 279 19 33 chr4_random 8319854 8320069 -10531744 - MLT1A1 LTR MaLR -77 288 77 922 171 6 6 chr4_random 8320069 8320244 -10531569 - AluSp SINE Alu -2 311 137 504 191 0 0 chr4_random 8320246 8320330 -10531483 - MLT1A1 LTR MaLR -281 84 1 222 232 0 36 chr4_random 8320484 8320540 -10531273 + CT-rich Low_complexity Low_complexity 3 56 0 771 223 95 93 chr4_random 8320549 8320585 -10531228 - L1MC5 LINE L1 -622 7339 7305 240 35 0 0 chr4_random 8320585 8320614 -10531199 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 771 223 95 93 chr4_random 8320614 8321165 -10530648 - L1MC5 LINE L1 -656 7305 6751 276 237 175 9 chr4_random 8321648 8321762 -10530051 - L1ME3A LINE L1 -27 6143 6011 278 310 23 0 chr4_random 8321820 8321907 -10529906 + A-rich Low_complexity Low_complexity 4 92 0 1674 169 8 78 chr4_random 8323129 8323501 -10528312 + Tigger1 DNA MER2_type 26 371 -2047 * 9495 148 23 28 chr4_random 8323499 8325225 -10526588 + Tigger1 DNA MER2_type 700 2417 -1 380 167 128 0 chr4_random 8325518 8325596 -10526217 + MER5C DNA MER1_type 234 321 -3 248 248 124 58 chr4_random 8326301 8326422 -10525391 - MIR SINE MIR -106 156 28 21 57 0 0 chr4_random 8326810 8326845 -10524968 + AT_rich Low_complexity Low_complexity 1 35 0 215 182 23 0 chr4_random 8327285 8327329 -10524484 + T-rich Low_complexity Low_complexity 2 46 0 2179 121 0 3 chr4_random 8327752 8328057 -10523756 - AluSq SINE Alu -9 304 1 193 216 0 0 chr4_random 8328082 8328119 -10523694 + MIR3 SINE MIR 122 158 -50 339 273 13 78 chr4_random 8328168 8328322 -10523491 - MER103 DNA DNA -7 159 16 2298 81 0 3 chr4_random 8328346 8328643 -10523170 + AluY SINE Alu 3 298 -13 493 49 0 0 chr4_random 8328758 8328819 -10522994 + L1MC3 LINE L1 7225 7285 -500 299 330 59 0 chr4_random 8329192 8329310 -10522503 + MIR SINE MIR 82 206 -56 3217 47 5 7 chr4_random 8329358 8329767 -10522046 + L1PA7 LINE L1 5747 6154 0 288 273 171 34 chr4_random 8331144 8331320 -10520493 + L2 LINE L2 3110 3309 -4 186 133 0 0 chr4_random 8332064 8332094 -10519719 + (TATATG)n Simple_repeat Simple_repeat 1 30 0 227 271 0 62 chr4_random 8332101 8332197 -10519616 + L1MC4 LINE L1 6614 6703 -1339 439 257 20 0 chr4_random 8332347 8332495 -10519318 + (TATG)n Simple_repeat Simple_repeat 4 154 0 242 297 0 22 chr4_random 8332495 8332586 -10519227 + L1MC4 LINE L1 6614 6702 -1340 192 231 0 0 chr4_random 8332589 8332641 -10519172 + (TA)n Simple_repeat Simple_repeat 2 53 0 243 289 29 0 chr4_random 8332655 8332759 -10519054 + (TA)n Simple_repeat Simple_repeat 2 108 0 21 0 0 0 chr4_random 8333721 8333742 -10518071 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr4_random 8334452 8334481 -10517332 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4_random 8334668 8334692 -10517121 + AT_rich Low_complexity Low_complexity 1 24 0 19914 45 51 3 chr4_random 8335724 8338286 -10513527 + L1P LINE L1 1 2686 -3460 2066 108 13 7 chr4_random 8338387 8338692 -10513121 + AluSx SINE Alu 1 307 -5 205 384 0 0 chr4_random 8338898 8338971 -10512842 - MIR SINE MIR -64 144 72 27 0 0 0 chr4_random 8339725 8339752 -10512061 + AT_rich Low_complexity Low_complexity 1 27 0 212 59 29 0 chr4_random 8339944 8339978 -10511835 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2323 131 0 5 chr4_random 8340102 8340469 -10511344 - L1PB1 LINE L1 0 6151 5787 250 241 0 0 chr4_random 8340469 8340527 -10511286 + MER4-int LTR ERV1 1105 1162 -5436 308 232 73 0 chr4_random 8340532 8340614 -10511199 + L1MC4 LINE L1 6615 6702 -1340 301 227 23 0 chr4_random 8340615 8340703 -10511110 + L1MC4 LINE L1 6614 6703 -1339 301 227 23 0 chr4_random 8340707 8340795 -10511018 + L1MC4 LINE L1 6614 6703 -1339 311 294 0 22 chr4_random 8340797 8340889 -10510924 + L1MC4 LINE L1 6614 6703 -1339 * 316 287 23 0 chr4_random 8340833 8340920 -10510893 - L1MC4 LINE L1 -1339 6703 6615 3416 114 4 30 chr4_random 8340959 8341648 -10510165 - L1P5 LINE L1 -378 5773 5104 5029 214 8 41 chr4_random 8341667 8342765 -10509048 + L1 LINE L1 3067 4119 -2027 1272 49 0 27 chr4_random 8342765 8342949 -10508864 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 5029 214 8 41 chr4_random 8342949 8343119 -10508694 + L1 LINE L1 4119 4293 -1853 24 0 0 0 chr4_random 8343119 8343143 -10508670 + AT_rich Low_complexity Low_complexity 1 24 0 1471 231 75 16 chr4_random 8343954 8344395 -10507418 + MLT1C LTR MaLR 1 467 0 472 318 76 25 chr4_random 8346328 8346526 -10505287 - MIR SINE MIR -2 260 53 23 33 0 0 chr4_random 8347175 8347205 -10504608 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr4_random 8347402 8347431 -10504382 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr4_random 8347860 8347881 -10503932 + AT_rich Low_complexity Low_complexity 1 21 0 1987 116 44 0 chr4_random 8348154 8348447 -10503366 + AluY SINE Alu 1 306 -5 13008 159 21 20 chr4_random 8348462 8349836 -10501977 + Tigger1 DNA MER2_type 1 1378 -1040 1962 117 14 3 chr4_random 8349836 8350127 -10501686 - AluY SINE Alu -13 298 5 13008 159 21 20 chr4_random 8350127 8351169 -10500644 + Tigger1 DNA MER2_type 1378 2418 0 34 42 0 0 chr4_random 8351230 8351278 -10500535 + AT_rich Low_complexity Low_complexity 1 48 0 2207 118 3 0 chr4_random 8351280 8351610 -10500203 - L1PA13 LINE L1 -6 6157 5827 37 93 0 0 chr4_random 8351697 8351804 -10500009 + AT_rich Low_complexity Low_complexity 1 107 0 21 0 0 0 chr4_random 8352314 8352335 -10499478 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4_random 8352454 8352479 -10499334 + AT_rich Low_complexity Low_complexity 1 25 0 241 320 19 10 chr4_random 8352640 8352743 -10499070 - MER5A DNA MER1_type -62 127 24 406 267 219 0 chr4_random 8352765 8352911 -10498902 + MER5A DNA MER1_type 10 187 -2 7940 127 185 131 chr4_random 8353974 8354852 -10496961 + MER51-int LTR ERV1 359 1188 -6628 1776 191 93 28 chr4_random 8354852 8355312 -10496501 - LTR2B LTR ERV1 0 490 1 7940 127 185 131 chr4_random 8355312 8356946 -10494867 + MER51-int LTR ERV1 1188 3007 -4809 1776 107 52 9 chr4_random 8356948 8357334 -10494479 + LTR7 LTR ERV1 1 450 0 1906 97 59 0 chr4_random 8357334 8357622 -10494191 + MER51B-int LTR ERV1 3005 3309 -4507 1831 180 55 2 chr4_random 8357612 8358061 -10493752 + MER51B-int LTR ERV1 1474 3172 -2774 * 599 88 11 0 chr4_random 8358090 8358181 -10493632 + MER51B-int LTR ERV1 2210 2301 -2916 * 1505 101 5 5 chr4_random 8358178 8358395 -10493418 + MER51B-int LTR ERV1 5081 5297 -2121 30 0 0 0 chr4_random 8358396 8358426 -10493387 + AT_rich Low_complexity Low_complexity 1 30 0 7089 42 0 17 chr4_random 8358426 8359221 -10492592 - L1PA5 LINE L1 -11 6143 5373 2442 81 0 9 chr4_random 8359221 8359541 -10492272 + AluYb8 SINE Alu 1 317 -1 7089 42 0 17 chr4_random 8359541 8360204 -10491609 - L1PA5 LINE L1 -781 5373 4700 3553 42 11 0 chr4_random 8360204 8360652 -10491161 + L1PA5 LINE L1 4250 4702 -1444 550 133 20 10 chr4_random 8360652 8360750 -10491063 + MER51B-int LTR ERV1 4906 5004 -2533 405 141 109 11 chr4_random 8360749 8360841 -10490972 + MER51B-int LTR ERV1 5249 5349 -2188 * 7757 137 23 16 chr4_random 8360831 8362301 -10489512 + MER51B-int LTR ERV1 5620 7147 -390 669 199 22 0 chr4_random 8362301 8362437 -10489376 + LTR54B LTR ERV1 3 141 -357 2357 120 15 0 chr4_random 8362437 8362778 -10489035 + MER51B-int LTR ERV1 7470 7815 -1 2056 137 74 0 chr4_random 8362780 8363131 -10488682 + MER51B LTR ERV1 1 377 0 25 31 0 0 chr4_random 8363717 8363749 -10488064 + AT_rich Low_complexity Low_complexity 1 32 0 957 120 42 12 chr4_random 8365038 8365204 -10486609 - LTR23 LTR ERV1 0 437 267 3109 60 2 106 chr4_random 8365204 8365704 -10486109 + LTR7 LTR ERV1 1 448 -2 1245 153 65 23 chr4_random 8365705 8365966 -10485847 - LTR23 LTR ERV1 -165 272 1 408 265 12 29 chr4_random 8365968 8366138 -10485675 + (TA)n Simple_repeat Simple_repeat 2 168 0 476 279 125 67 chr4_random 8366841 8367591 -10484222 - L1MDa LINE L1 -4360 1720 927 11070 33 1 1 chr4_random 8367725 8369847 -10481966 + L1PA3 LINE L1 4031 6152 -3 26 0 0 0 chr4_random 8369848 8369874 -10481939 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr4_random 8369895 8369918 -10481895 + (A)n Simple_repeat Simple_repeat 1 23 0 629 335 86 32 chr4_random 8369934 8370501 -10481312 - L1MDa LINE L1 -5326 744 147 2526 238 30 19 chr4_random 8370541 8371166 -10480647 - MER39 LTR ERV1 0 707 76 1166 144 54 0 chr4_random 8371168 8371390 -10480423 - L1PA13 LINE L1 0 6814 6581 13141 189 22 22 chr4_random 8371390 8374760 -10477053 - L1PA13 LINE L1 -482 6330 2963 10028 200 18 6 chr4_random 8374741 8375024 -10476789 - L1PA13 LINE L1 -4892 1895 1617 * 222 37 0 0 chr4_random 8375024 8375051 -10476762 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 10028 200 18 6 chr4_random 8375051 8376640 -10475173 - L1PA13 LINE L1 -5170 1617 1 335 247 56 0 chr4_random 8376839 8376928 -10474885 - MER21B LTR ERV1 -517 346 253 515 171 0 0 chr4_random 8376938 8377020 -10474793 - MER39 LTR ERV1 -625 82 1 2546 266 114 42 chr4_random 8377908 8377943 -10473870 + L1MDa LINE L1 19 50 -6490 2824 217 33 3 chr4_random 8377943 8378547 -10473266 - LTR26E LTR ERV1 0 622 1 2546 266 114 42 chr4_random 8378547 8379998 -10471815 + L1MDa LINE L1 50 1691 -4849 398 194 29 29 chr4_random 8379990 8380093 -10471720 - L1MDa LINE L1 -4665 1875 1773 * 1145 258 105 0 chr4_random 8380075 8380447 -10471366 - L1MD1 LINE L1 -226 6016 5606 1640 175 49 110 chr4_random 8380547 8380992 -10470821 + MSTB LTR MaLR 9 426 0 7810 198 31 18 chr4_random 8380992 8382623 -10469190 + MSTB-int LTR MaLR 1 1651 0 384 109 0 0 chr4_random 8382623 8382678 -10469135 + MSTB LTR MaLR 1 55 -371 2007 203 57 3 chr4_random 8382679 8383064 -10468749 + MSTB LTR MaLR 19 424 -2 1287 250 87 41 chr4_random 8384118 8384993 -10466820 - L1ME1 LINE L1 -253 5982 5087 459 0 0 0 chr4_random 8385086 8385137 -10466676 + (CATTA)n Simple_repeat Simple_repeat 3 53 0 775 230 43 64 chr4_random 8385164 8385335 -10466478 - MLT1E LTR MaLR -8 585 419 1471 184 36 0 chr4_random 8385335 8385613 -10466200 + AluJo SINE Alu 9 296 -16 775 230 43 64 chr4_random 8385613 8385676 -10466137 - MLT1E LTR MaLR -174 419 356 3182 149 150 63 chr4_random 8385723 8386490 -10465323 + MER52C LTR ERV1 445 1278 0 288 260 0 14 chr4_random 8386548 8386621 -10465192 - MLT1E LTR MaLR -318 275 204 239 193 105 0 chr4_random 8386665 8386722 -10465091 - U7 snRNA snRNA 0 63 1 * 413 287 9 9 chr4_random 8386721 8386836 -10464977 - MLT1E LTR MaLR -431 162 48 495 303 44 22 chr4_random 8386886 8387160 -10464653 - L1ME1 LINE L1 -1256 4959 4680 1537 288 83 40 chr4_random 8387389 8388596 -10463217 - L1ME1 LINE L1 -1599 4616 3358 2890 230 36 1 chr4_random 8388609 8389284 -10462529 - L1MB5 LINE L1 -1 6409 5712 1076 267 80 55 chr4_random 8389319 8389990 -10461823 + LTR34 LTR ERV1 1 685 -14 2482 253 33 11 chr4_random 8389996 8390490 -10461323 - L1MB5 LINE L1 -712 5698 5176 2349 68 3 16 chr4_random 8390490 8390800 -10461013 - AluY SINE Alu -5 306 1 2482 253 33 11 chr4_random 8390800 8391170 -10460643 - L1MB5 LINE L1 -1234 5176 4815 746 244 67 20 chr4_random 8391170 8391527 -10460286 - L1MB5 LINE L1 -4088 2296 1923 1849 159 14 0 chr4_random 8391595 8391878 -10459935 - AluSx SINE Alu -20 292 6 1307 264 12 17 chr4_random 8392054 8392399 -10459414 + MLT1A1 LTR MaLR 11 353 -12 390 273 42 101 chr4_random 8392502 8392910 -10458903 - L1ME1 LINE L1 -5141 1255 875 1589 195 107 57 chr4_random 8392910 8393351 -10458462 + MLT1C LTR MaLR 3 465 -2 390 273 42 101 chr4_random 8393351 8393396 -10458417 - L1ME1 LINE L1 -5521 875 829 29 21 0 21 chr4_random 8393437 8393451 -10458362 + AT_rich Low_complexity Low_complexity 1 14 -32 1889 148 3 0 chr4_random 8393451 8393734 -10458079 - AluSx SINE Alu -28 284 1 29 21 0 21 chr4_random 8393734 8393766 -10458047 + AT_rich Low_complexity Low_complexity 14 46 0 1113 276 40 25 chr4_random 8394599 8394968 -10456845 - L1ME1 LINE L1 -5579 817 440 2110 128 46 22 chr4_random 8394968 8395334 -10456479 - THE1C LTR MaLR 0 375 1 1113 276 40 25 chr4_random 8395334 8395363 -10456450 - L1ME1 LINE L1 -5956 440 413 408 239 74 68 chr4_random 8395432 8395608 -10456205 - MLT1H LTR MaLR -268 281 105 845 250 36 50 chr4_random 8395684 8395964 -10455849 - ERVL LTR ERVL -3197 2567 2292 978 240 45 11 chr4_random 8396583 8397056 -10454757 - MER34 LTR ERV1 -2 540 25 316 255 6 6 chr4_random 8398657 8398814 -10452999 + (TA)n Simple_repeat Simple_repeat 1 157 0 622 170 0 0 chr4_random 8399210 8399322 -10452491 + L1 LINE L1 5164 5275 -871 22 35 0 0 chr4_random 8399383 8399412 -10452401 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr4_random 8399557 8399608 -10452205 + AT_rich Low_complexity Low_complexity 1 51 0 1101 219 35 0 chr4_random 8400156 8400439 -10451374 - MER33 DNA MER1_type -27 297 5 1543 198 112 6 chr4_random 8400489 8400847 -10450966 - MSTD LTR MaLR 0 396 1 954 329 97 68 chr4_random 8401010 8401917 -10449896 - L2 LINE L2 -422 2892 1936 1926 97 0 78 chr4_random 8401917 8402226 -10449587 + AluY SINE Alu 1 285 -26 954 329 97 68 chr4_random 8402226 8402590 -10449223 - L2 LINE L2 -1378 1936 1584 10602 32 0 1 chr4_random 8402723 8404021 -10447792 + L1P LINE L1 2903 4199 -1947 2284 72 3 0 chr4_random 8404034 8404324 -10447489 - AluY SINE Alu -20 291 1 215 364 0 20 chr4_random 8404378 8404477 -10447336 + L2 LINE L2 2681 2777 -537 185 281 61 37 chr4_random 8404763 8404845 -10446968 + L2 LINE L2 3223 3306 -7 * 501 270 15 81 chr4_random 8404816 8405075 -10446738 - L2 LINE L2 0 3313 3072 23 0 0 0 chr4_random 8405945 8405968 -10445845 + AT_rich Low_complexity Low_complexity 1 23 0 2248 114 0 0 chr4_random 8407032 8407340 -10444473 - AluSc SINE Alu -1 308 1 1009 329 136 9 chr4_random 8407784 8408432 -10443381 - L2 LINE L2 -176 3137 2413 250 320 70 20 chr4_random 8408480 8408580 -10443233 - HAL1 LINE L1 -2393 114 10 335 296 146 45 chr4_random 8409569 8409856 -10441957 - MLT1H LTR MaLR -5 544 229 397 143 0 0 chr4_random 8409996 8410052 -10441761 - MLT1B LTR MaLR 0 390 335 1816 139 3 80 chr4_random 8410052 8410389 -10441424 - MER1B DNA MER1_type 0 339 29 430 171 0 0 chr4_random 8410396 8410466 -10441347 - MLT1B LTR MaLR -46 344 275 1922 203 60 17 chr4_random 8410475 8410938 -10440875 + LTR38 LTR ERV1 5 487 -69 1215 211 49 4 chr4_random 8410981 8411246 -10440567 - MLT1B LTR MaLR -113 277 1 757 237 54 0 chr4_random 8411446 8411632 -10440181 - MER20 DNA MER1_type 0 219 24 22 0 0 0 chr4_random 8412018 8412040 -10439773 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4_random 8412282 8412303 -10439510 + AT_rich Low_complexity Low_complexity 1 21 0 1128 241 45 34 chr4_random 8413857 8414009 -10437804 + MLT1A2 LTR MaLR 3 152 -222 4028 70 2 0 chr4_random 8414009 8414538 -10437275 + L1PA7 LINE L1 5625 6154 0 1128 241 45 34 chr4_random 8414538 8414738 -10437075 + MLT1A2 LTR MaLR 152 359 -15 233 268 28 28 chr4_random 8414778 8414849 -10436964 + MIR SINE MIR 165 235 -27 400 304 116 40 chr4_random 8415589 8416385 -10435428 + L1ME4a LINE L1 5405 5885 -236 1696 194 46 3 chr4_random 8415973 8416323 -10435490 - MLT1A1 LTR MaLR 0 365 1 312 280 104 76 chr4_random 8416323 8416420 -10435393 + L1MB8 LINE L1 5833 5926 -252 2275 96 0 0 chr4_random 8416474 8416767 -10435046 - AluSg SINE Alu -1 309 17 2111 132 50 19 chr4_random 8416799 8417163 -10434650 + THE1C LTR MaLR 1 375 0 191 329 85 0 chr4_random 8417460 8417542 -10434271 + MIR3 SINE MIR 113 201 -7 22 0 0 0 chr4_random 8418034 8418056 -10433757 + AT_rich Low_complexity Low_complexity 1 22 0 319 207 198 45 chr4_random 8418244 8418399 -10433414 - L1ME2 LINE L1 -79 6083 5902 183 204 0 0 chr4_random 8418461 8418510 -10433303 + (TATATG)n Simple_repeat Simple_repeat 5 53 0 890 253 39 27 chr4_random 8418536 8418793 -10433020 - L1ME2 LINE L1 -441 5723 5464 1522 173 81 59 chr4_random 8419099 8419636 -10432177 - MER67C LTR ERV1 0 514 1 22 0 0 0 chr4_random 8419811 8419833 -10431980 + AT_rich Low_complexity Low_complexity 1 22 0 236 53 26 0 chr4_random 8420350 8420388 -10431425 + (TTTA)n Simple_repeat Simple_repeat 1 39 0 30677 26 0 0 chr4_random 8420389 8424827 -10426986 - L1PA2 LINE L1 -13 6142 1705 10106 30 0 0 chr4_random 8424827 8426847 -10424966 + L1PA2 LINE L1 4172 6189 0 267 284 128 0 chr4_random 8427220 8427322 -10424491 + MIR3 SINE MIR 88 202 -6 7536 244 57 19 chr4_random 8427805 8430920 -10420893 + L1MC1 LINE L1 2851 6078 -255 232 331 56 21 chr4_random 8431445 8431587 -10420226 - L1 LINE L1 -2027 4119 3973 344 320 64 68 chr4_random 8431637 8431871 -10419942 + MLT2E LTR ERVL 20 252 -376 2098 264 8 15 chr4_random 8431945 8432468 -10419345 - MLT1F LTR MaLR 0 542 24 232 236 0 0 chr4_random 8432469 8432524 -10419289 - L1 LINE L1 -1301 4845 4791 409 313 57 18 chr4_random 8432623 8432850 -10418963 - L1 LINE L1 -1491 4655 4420 32 0 0 0 chr4_random 8432876 8432908 -10418905 + AT_rich Low_complexity Low_complexity 1 32 0 306 290 0 43 chr4_random 8433982 8434075 -10417738 + L1MC4 LINE L1 6614 6702 -1340 1927 160 0 10 chr4_random 8435622 8435935 -10415878 + AluSx SINE Alu 1 310 -2 22 56 0 0 chr4_random 8436532 8436568 -10415245 + AT_rich Low_complexity Low_complexity 1 36 0 1997 109 4 0 chr4_random 8437929 8438204 -10413609 - AluSq SINE Alu -12 301 26 28 0 0 0 chr4_random 8438439 8438467 -10413346 + AT_rich Low_complexity Low_complexity 1 28 0 338 339 227 12 chr4_random 8438518 8438622 -10413191 - L3 LINE CR1 -100 1477 1397 378 0 0 0 chr4_random 8438622 8438664 -10413149 + (CA)n Simple_repeat Simple_repeat 2 43 0 338 339 227 12 chr4_random 8438664 8438889 -10412924 - L3 LINE CR1 -180 1397 1077 940 118 28 11 chr4_random 8440854 8441032 -10410781 + L1MA3 LINE L1 6125 6305 0 1961 130 16 3 chr4_random 8441806 8442114 -10409699 + AluSx SINE Alu 1 312 0 685 170 14 0 chr4_random 8442114 8442255 -10409558 + GA-rich Low_complexity Low_complexity 3 145 0 320 250 61 18 chr4_random 8442259 8442507 -10409306 + LTR37A LTR ERV1 138 352 -74 35340 106 11 13 chr4_random 8442690 8443072 -10408741 - L1PA6 LINE L1 -3 6151 5770 2230 90 35 0 chr4_random 8443072 8443360 -10408453 - AluSp SINE Alu -15 298 1 35340 106 11 13 chr4_random 8443360 8449141 -10402672 - L1PA6 LINE L1 -384 5770 1 2089 117 0 3 chr4_random 8449563 8449902 -10401911 - AluY SINE Alu 0 338 1 1892 117 4 0 chr4_random 8450481 8450747 -10401066 + AluSp SINE Alu 39 305 -8 539 277 22 0 chr4_random 8450753 8450890 -10400923 + MER5A DNA MER1_type 10 149 -40 295 279 128 0 chr4_random 8451009 8451095 -10400718 - MER5A DNA MER1_type -83 106 10 21 0 0 0 chr4_random 8452615 8452636 -10399177 + AT_rich Low_complexity Low_complexity 1 21 0 215 190 17 0 chr4_random 8453639 8453697 -10398116 + GA-rich Low_complexity Low_complexity 1 59 0 925 287 83 57 chr4_random 8454031 8454612 -10397201 + MER20B DNA MER1_type 2 609 -174 360 0 0 0 chr4_random 8454612 8454652 -10397161 + (TG)n Simple_repeat Simple_repeat 1 40 0 925 287 83 57 chr4_random 8454652 8454826 -10396987 + MER20B DNA MER1_type 609 777 -6 191 200 0 33 chr4_random 8455133 8455193 -10396620 + (CATA)n Simple_repeat Simple_repeat 3 60 0 407 258 0 21 chr4_random 8455217 8455314 -10396499 + MER5A DNA MER1_type 15 109 -80 622 302 128 40 chr4_random 8455690 8456087 -10395726 + Charlie2 DNA MER1_type 94 525 -2337 794 241 186 24 chr4_random 8456186 8456895 -10394918 + Charlie2 DNA MER1_type 1672 2576 -286 3126 250 79 35 chr4_random 8456900 8458030 -10393783 + MER69B DNA AcHobo 39 1218 -8 22 80 0 0 chr4_random 8460337 8460387 -10391426 + AT_rich Low_complexity Low_complexity 1 50 0 2333 85 0 3 chr4_random 8460820 8461125 -10390688 + AluY SINE Alu 1 304 -7 26 74 0 0 chr4_random 8461202 8461256 -10390557 + AT_rich Low_complexity Low_complexity 1 54 0 260 260 14 0 chr4_random 8461737 8461810 -10390003 + (CA)n Simple_repeat Simple_repeat 2 75 0 281 242 15 0 chr4_random 8462867 8462933 -10388880 + MER5B DNA MER1_type 2 68 -110 460 317 158 0 chr4_random 8464197 8464380 -10387433 + MIR SINE MIR 45 256 -6 248 295 0 0 chr4_random 8465029 8465090 -10386723 - 7SK RNA RNA 0 193 133 2177 104 0 7 chr4_random 8465903 8466200 -10385613 + AluSx SINE Alu 1 295 -17 315 345 174 0 chr4_random 8468066 8468365 -10383448 + L2 LINE L2 2963 3313 0 203 152 0 0 chr4_random 8468648 8468681 -10383132 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 801 137 8 8 chr4_random 8469481 8469605 -10382208 + MLT1B LTR MaLR 206 329 -61 245 292 29 95 chr4_random 8469900 8470037 -10381776 + L2 LINE L2 2192 2319 -995 2228 112 0 0 chr4_random 8470434 8470729 -10381084 + AluSg SINE Alu 1 295 -15 613 304 83 53 chr4_random 8470750 8471148 -10380665 - MER77 LTR ERV1 -118 487 78 220 292 0 15 chr4_random 8471416 8471481 -10380332 + MIR SINE MIR 86 149 -113 927 267 48 68 chr4_random 8471677 8472074 -10379739 - MLT1B LTR MaLR 0 390 2 884 331 169 42 chr4_random 8472233 8473000 -10378813 + L2 LINE L2 1051 2020 -1294 1933 114 0 72 chr4_random 8473000 8473333 -10378480 - AluY SINE Alu -2 309 1 884 331 169 42 chr4_random 8473333 8473740 -10378073 + L2 LINE L2 2020 2374 -940 194 154 0 0 chr4_random 8523834 8523860 -10327953 + T-rich Low_complexity Low_complexity 1 26 0 328 87 0 0 chr4_random 8523860 8523906 -10327907 + (G)n Simple_repeat Simple_repeat 1 46 0 1498 93 0 0 chr4_random 8524095 8524571 -10327242 + (G)n Simple_repeat Simple_repeat 1 476 0 300 368 112 46 chr4_random 8524572 8524857 -10326956 + L1M4 LINE L1 661 964 -5885 21 0 0 0 chr4_random 8525892 8525913 -10325900 + AT_rich Low_complexity Low_complexity 1 21 0 880 223 29 98 chr4_random 8526432 8526818 -10324995 - LTR37B LTR ERV1 -10 458 100 2126 271 23 10 chr4_random 8527383 8528153 -10323660 - L1M4 LINE L1 -2339 3807 3028 1946 155 19 0 chr4_random 8528198 8528559 -10323254 - L1MB4 LINE L1 0 6180 5813 6786 55 3 0 chr4_random 8528773 8529629 -10322184 - L1PA5 LINE L1 0 6154 5296 1278 261 10 29 chr4_random 8529848 8530158 -10321655 + LTR69 LTR ERVL 281 584 -4 1142 246 49 19 chr4_random 8530181 8530612 -10321201 + L1M4 LINE L1 2846 3289 -3559 1734 95 0 0 chr4_random 8530631 8530873 -10320940 + L1P LINE L1 4132 4373 -1773 1382 270 119 55 chr4_random 8530869 8531128 -10320685 + L1M4 LINE L1 3314 3555 -3293 * 1686 196 25 41 chr4_random 8531128 8531521 -10320292 - MLT1B LTR MaLR 0 390 4 1382 270 119 55 chr4_random 8531521 8532367 -10319446 + L1M4 LINE L1 3555 4490 -2358 263 311 33 0 chr4_random 8532764 8532854 -10318959 - MIR SINE MIR -73 189 97 201 243 40 0 chr4_random 8533432 8533506 -10318307 + (TA)n Simple_repeat Simple_repeat 2 78 0 22 35 0 0 chr4_random 8533628 8533657 -10318156 + AT_rich Low_complexity Low_complexity 1 29 0 232 221 139 23 chr4_random 8533907 8533993 -10317820 + MIR SINE MIR 122 217 -45 281 377 59 25 chr4_random 8534699 8534935 -10316878 + MIR SINE MIR 2 245 -17 5605 212 80 36 chr4_random 8535349 8537770 -10314043 + L1ME3A LINE L1 946 3463 -3101 2704 62 0 39 chr4_random 8537763 8538345 -10313468 + L1P2 LINE L1 5045 5596 -558 * 1258 281 40 8 chr4_random 8538526 8539387 -10312426 - L1MEc LINE L1 -3423 2792 1947 393 251 43 99 chr4_random 8539471 8539774 -10312039 - L1MEc LINE L1 -5106 1290 1005 647 275 70 72 chr4_random 8539816 8540216 -10311597 - MER57A LTR ERV1 -3 400 1 324 158 39 47 chr4_random 8540217 8540344 -10311469 + (TTAAA)n Simple_repeat Simple_repeat 4 129 0 1278 250 81 9 chr4_random 8540351 8540771 -10311042 - L1MEc LINE L1 -5455 941 492 29 84 0 0 chr4_random 8540895 8540966 -10310847 + AT_rich Low_complexity Low_complexity 1 71 0 419 223 38 6 chr4_random 8542368 8542525 -10309288 + (TA)n Simple_repeat Simple_repeat 1 162 0 1927 154 0 0 chr4_random 8542525 8542818 -10308995 - AluSc SINE Alu -16 293 1 5074 168 38 12 chr4_random 8542919 8543974 -10307839 - L1MA3 LINE L1 -72 6233 5114 1888 148 0 10 chr4_random 8543974 8544277 -10307536 + AluSx SINE Alu 1 300 -12 5074 168 38 12 chr4_random 8544277 8544924 -10306889 - L1MA3 LINE L1 -1191 5114 4485 1743 228 21 21 chr4_random 8544928 8545310 -10306503 - L1M1 LINE L1 -7168 397 16 3133 256 74 28 chr4_random 8545317 8546531 -10305282 + L1ME3A LINE L1 4213 5482 -1082 1032 266 85 34 chr4_random 8546765 8546917 -10304896 + L1ME3A LINE L1 6022 6165 -423 234 62 0 0 chr4_random 8546917 8546949 -10304864 + (CA)n Simple_repeat Simple_repeat 2 33 0 1032 266 85 34 chr4_random 8546949 8547325 -10304488 + L1ME3A LINE L1 6165 6577 -11 393 22 0 0 chr4_random 8547861 8547907 -10303906 + (TA)n Simple_repeat Simple_repeat 2 47 0 215 278 69 0 chr4_random 8548045 8548117 -10303696 - MIR SINE MIR -98 164 88 21 57 0 0 chr4_random 8548830 8548865 -10302948 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr4_random 8549582 8549613 -10302200 + AT_rich Low_complexity Low_complexity 1 31 0 1994 109 10 26 chr4_random 8549777 8550080 -10301733 + AluSx SINE Alu 1 298 -14 2219 96 0 0 chr4_random 8550722 8551014 -10300799 - AluY SINE Alu -17 294 3 243 146 0 0 chr4_random 8551147 8551188 -10300625 + (T)n Simple_repeat Simple_repeat 1 41 0 227 265 26 17 chr4_random 8553519 8553636 -10298177 - L1M4 LINE L1 -3772 2374 2257 4449 164 23 2 chr4_random 8553637 8553856 -10297957 - L1PA16 LINE L1 -2 6164 5946 2370 215 25 26 chr4_random 8553856 8554487 -10297326 - L1MA6 LINE L1 -362 5938 5307 1419 159 19 11 chr4_random 8554487 8554757 -10297056 - L1PB2 LINE L1 -3 6148 5877 2370 215 25 26 chr4_random 8554757 8554804 -10297009 - L1MA6 LINE L1 -993 5307 5261 2007 141 3 0 chr4_random 8559867 8560173 -10291640 - AluSg SINE Alu -3 307 1 23 0 0 0 chr4_random 8560647 8560670 -10291143 + AT_rich Low_complexity Low_complexity 1 23 0 233 253 51 108 chr4_random 8560946 8561006 -10290807 + L2 LINE L2 3164 3226 -87 2143 111 3 0 chr4_random 8561006 8561304 -10290509 - AluSx SINE Alu -13 299 1 233 253 51 108 chr4_random 8561304 8561401 -10290412 + L2 LINE L2 3226 3312 -1 3835 133 75 51 chr4_random 8561544 8562974 -10288839 + pTR5 LTR ERV1 741 2606 0 614 304 0 48 chr4_random 8565194 8565424 -10286389 - MIR SINE MIR -32 230 12 213 347 52 36 chr4_random 8566227 8566420 -10285393 + MIR3 SINE MIR 4 199 -9 711 181 14 21 chr4_random 8566761 8566905 -10284908 - MLT1A1 LTR MaLR -4 361 219 3941 41 2 0 chr4_random 8566972 8567456 -10284357 - L1PA4 LINE L1 -8 6147 5663 415 322 4 25 chr4_random 8567511 8567713 -10284100 - MSTC LTR MaLR -169 196 1 619 143 0 0 chr4_random 8568638 8568736 -10283077 + L1PA7 LINE L1 1 98 -6363 * 11573 98 13 1 chr4_random 8568727 8569250 -10282563 + L1PA7 LINE L1 3461 3976 -2493 417 39 0 0 chr4_random 8569250 8569301 -10282512 + (CA)n Simple_repeat Simple_repeat 2 52 0 11573 98 13 1 chr4_random 8569301 8571724 -10280089 + L1PA7 LINE L1 3976 6448 -21 781 233 42 45 chr4_random 8571817 8572147 -10279666 - L1ME LINE L1 -5000 1070 742 3858 169 16 21 chr4_random 8572343 8573236 -10278577 - L1PA16 LINE L1 -236 5930 5039 1322 240 40 5 chr4_random 8573233 8573608 -10278205 + L1P LINE L1 2174 2561 -3585 * 405 0 0 0 chr4_random 8573649 8573694 -10278119 + (TG)n Simple_repeat Simple_repeat 2 46 0 941 249 51 0 chr4_random 8573694 8573931 -10277882 - MER82 DNA MER2_type -382 271 23 2555 144 33 16 chr4_random 8573979 8574429 -10277384 + LTR22A LTR ERVK 1 458 0 5104 141 19 10 chr4_random 8574429 8575233 -10276580 + HERVK22 LTR ERVK 1 811 -6026 4228 109 12 0 chr4_random 8575227 8575823 -10275990 + HERVK22 LTR ERVK 2328 2930 -3907 * 1249 143 4 0 chr4_random 8575826 8576086 -10275727 + HERVK22 LTR ERVK 3333 6837 0 2493 175 4 15 chr4_random 8576086 8576549 -10275264 + LTR22A LTR ERVK 1 458 0 1985 279 77 41 chr4_random 8576549 8577737 -10274076 + L1ME1 LINE L1 3815 5045 -1101 1658 263 31 68 chr4_random 8577769 8578023 -10273790 + L1ME1 LINE L1 5210 5472 -694 2010 115 7 0 chr4_random 8578023 8578311 -10273502 + AluSq SINE Alu 1 290 -23 189 0 0 0 chr4_random 8578315 8578336 -10273477 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1658 263 31 68 chr4_random 8578336 8578934 -10272879 + L1ME1 LINE L1 5475 6023 -143 320 171 40 0 chr4_random 8578934 8579010 -10272803 + L1MA10 LINE L1 6248 6326 -8 357 275 126 53 chr4_random 8579020 8579267 -10272546 + L1ME2 LINE L1 5870 6134 -30 33 0 0 0 chr4_random 8579926 8579959 -10271854 + AT_rich Low_complexity Low_complexity 1 33 0 2104 118 0 37 chr4_random 8579965 8580288 -10271525 - AluSq SINE Alu 0 313 3 541 318 43 21 chr4_random 8580943 8581176 -10270637 + MIR SINE MIR 21 258 -4 22 35 0 0 chr4_random 8581747 8581776 -10270037 + AT_rich Low_complexity Low_complexity 1 29 0 3480 250 11 2 chr4_random 8581784 8582681 -10269132 - L1MB7 LINE L1 -9 6175 5271 245 342 0 0 chr4_random 8582807 8582886 -10268927 - L2 LINE L2 0 3272 3194 478 373 81 34 chr4_random 8583082 8583578 -10268235 - L2 LINE L2 -344 2970 2452 1320 159 9 4 chr4_random 8583618 8583845 -10267968 - AluSx SINE Alu -83 229 2 21 0 0 0 chr4_random 8583845 8583866 -10267947 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr4_random 8584410 8584450 -10267363 + AT_rich Low_complexity Low_complexity 1 40 0 244 367 48 24 chr4_random 8586382 8586592 -10265221 - MIR SINE MIR -46 216 2 339 240 134 13 chr4_random 8587517 8587670 -10264143 + MIR SINE MIR 43 212 -50 11861 199 29 51 chr4_random 8587730 8588819 -10262994 - L1MA6 LINE L1 -12 6470 5358 2226 116 3 0 chr4_random 8588819 8589121 -10262692 + AluSc SINE Alu 7 309 0 11861 199 29 51 chr4_random 8589121 8592237 -10259576 - L1MA6 LINE L1 -1124 5358 2353 380 327 60 72 chr4_random 8592220 8592801 -10259012 - L1MA6 LINE L1 -4496 832 259 * 1329 202 91 23 chr4_random 8592985 8593336 -10258477 - LTR49 LTR ERV1 -23 572 198 783 80 0 0 chr4_random 8593343 8593456 -10258357 + MLT2A2 LTR ERVL 1 113 -340 521 341 42 42 chr4_random 8593591 8593852 -10257961 + MIR SINE MIR 2 262 0 4773 204 54 15 chr4_random 8593932 8595919 -10255894 + L1PA15 LINE L1 3969 6109 -56 2560 158 9 2 chr4_random 8595939 8596368 -10255445 - MER41B LTR ERV1 0 635 204 22 35 0 0 chr4_random 8597604 8597633 -10254180 + AT_rich Low_complexity Low_complexity 1 29 0 37 23 0 0 chr4_random 8597798 8597842 -10253971 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr4_random 8598441 8598481 -10253332 + AT_rich Low_complexity Low_complexity 1 40 0 4296 142 35 55 chr4_random 8598481 8599371 -10252442 - MER4D LTR ERV1 0 872 1 417 306 173 14 chr4_random 8599408 8599686 -10252127 - L2 LINE L2 -766 2548 2227 24 32 0 0 chr4_random 8600082 8600113 -10251700 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr4_random 8601052 8601092 -10250721 + AT_rich Low_complexity Low_complexity 1 40 0 1280 175 28 2 chr4_random 8602349 8602764 -10249049 + MER101 LTR ERV1 1 474 0 486 325 5 21 chr4_random 8603030 8603218 -10248595 + MIR SINE MIR 50 234 -28 827 316 87 17 chr4_random 8603391 8603805 -10248008 - L2 LINE L2 -1109 2205 1763 409 256 139 23 chr4_random 8603827 8604042 -10247771 - Charlie4 DNA MER1_type -1666 295 56 187 300 62 50 chr4_random 8604060 8604140 -10247673 - L3 LINE CR1 -1133 444 364 * 827 286 152 68 chr4_random 8604127 8604719 -10247094 - L2 LINE L2 -1558 1756 1115 420 360 36 0 chr4_random 8604740 8604879 -10246934 - L2 LINE L2 -2 3270 3127 325 217 57 132 chr4_random 8605418 8605630 -10246183 + L2 LINE L2 3118 3313 0 641 189 15 23 chr4_random 8606222 8606354 -10245459 - FLAM_C SINE Alu 0 133 3 264 59 0 0 chr4_random 8606852 8606886 -10244927 + (CAT)n Simple_repeat Simple_repeat 1 34 0 27 62 0 0 chr4_random 8607528 8607576 -10244237 + AT_rich Low_complexity Low_complexity 1 48 0 2000 119 0 14 chr4_random 8607874 8608168 -10243645 - AluSc SINE Alu -19 290 1 21 0 0 0 chr4_random 8608832 8608853 -10242960 + AT_rich Low_complexity Low_complexity 1 21 0 8461 86 3 3 chr4_random 8608971 8610089 -10241724 + HERVL-A1 LTR ERVL 4537 5654 0 2667 96 0 19 chr4_random 8610089 8610466 -10241347 + MLT2A1 LTR ERVL 1 370 -74 * 5737 207 167 20 chr4_random 8610465 8611827 -10239986 + MER52A LTR ERV1 89 1755 0 331 261 9 18 chr4_random 8611829 8611940 -10239873 + L1M2 LINE L1 5193 5302 -844 2193 88 10 3 chr4_random 8611946 8612242 -10239571 + AluY SINE Alu 1 298 -13 1323 153 20 4 chr4_random 8612252 8612500 -10239313 + L1M2 LINE L1 5353 5604 -708 13888 39 0 2 chr4_random 8612836 8615314 -10236499 - L1PA4 LINE L1 0 6155 3680 7685 16 0 0 chr4_random 8615369 8616254 -10235559 - L1PA2 LINE L1 -1 6154 5270 * 18820 43 7 0 chr4_random 8616253 8618613 -10233200 - L1PA4 LINE L1 -2456 3690 1315 343 248 26 43 chr4_random 8618678 8618795 -10233018 - L1ME2 LINE L1 -63 6101 5987 813 251 39 12 chr4_random 8618865 8619120 -10232693 - L1ME2 LINE L1 -527 5639 5378 1581 190 10 17 chr4_random 8619922 8620211 -10231602 + AluSx SINE Alu 3 289 -23 259 110 6 23 chr4_random 8620174 8620227 -10231586 + Alu SINE Alu 253 289 -13 * 766 273 134 13 chr4_random 8620218 8620543 -10231270 + L1M4 LINE L1 2857 3240 -2906 2171 128 0 3 chr4_random 8620543 8620849 -10230964 + AluSq SINE Alu 1 305 -8 766 273 134 13 chr4_random 8620849 8620918 -10230895 + L1M4 LINE L1 3240 3299 -2847 332 260 72 5 chr4_random 8621319 8621503 -10230310 + L1M4 LINE L1 3627 3821 -2325 304 298 42 63 chr4_random 8621664 8621855 -10229958 + L1M4 LINE L1 4789 4975 -1171 294 296 54 31 chr4_random 8621900 8622194 -10229619 + L1M4 LINE L1 5089 5389 -757 599 268 17 11 chr4_random 8622714 8622893 -10228920 - L1MCa LINE L1 -5605 821 642 22 56 0 0 chr4_random 8623983 8624019 -10227794 + AT_rich Low_complexity Low_complexity 1 36 0 222 91 0 0 chr4_random 8624297 8624330 -10227483 + (CA)n Simple_repeat Simple_repeat 2 34 0 32 0 0 0 chr4_random 8624385 8624417 -10227396 + AT_rich Low_complexity Low_complexity 1 32 0 233 336 136 7 chr4_random 8624678 8624818 -10226995 - L2 LINE L2 0 3272 3115 4224 110 8 0 chr4_random 8626257 8626873 -10224940 - L1P LINE L1 -1755 4391 3771 6566 80 11 4 chr4_random 8626873 8627807 -10224006 + L1PA8 LINE L1 5229 6172 0 1771 167 56 22 chr4_random 8628429 8628789 -10223024 - THE1C LTR MaLR -1 374 3 2333 59 7 10 chr4_random 8628956 8629262 -10222551 - AluY SINE Alu -6 305 1 23 33 0 0 chr4_random 8630009 8630039 -10221774 + AT_rich Low_complexity Low_complexity 1 30 0 416 268 146 81 chr4_random 8630373 8630742 -10221071 + MLT1H LTR MaLR 107 499 -50 2591 180 38 14 chr4_random 8631880 8632380 -10219433 - L1PB4 LINE L1 -29 6127 5616 621 282 24 24 chr4_random 8633091 8633300 -10218513 - MER63A DNA MER1_type 0 210 2 878 309 36 72 chr4_random 8633305 8633775 -10218038 - LTR33A LTR ERVL 0 523 71 180 200 0 0 chr4_random 8634040 8634090 -10217723 + (TG)n Simple_repeat Simple_repeat 1 50 0 27 0 0 0 chr4_random 8634768 8634795 -10217018 + AT_rich Low_complexity Low_complexity 1 27 0 38 22 0 0 chr4_random 8634989 8635034 -10216779 + AT_rich Low_complexity Low_complexity 1 45 0 2026 109 74 40 chr4_random 8635939 8636289 -10215524 + THE1B LTR MaLR 1 362 -2 36 0 0 0 chr4_random 8636342 8636378 -10215435 + AT_rich Low_complexity Low_complexity 1 36 0 406 370 105 4 chr4_random 8636866 8637104 -10214709 + LTR16A LTR ERVL 183 444 -6 1347 171 4 0 chr4_random 8637464 8637698 -10214115 - L1MA4 LINE L1 -357 5943 5709 1646 192 6 6 chr4_random 8637698 8638041 -10213772 + L1MA4 LINE L1 5949 6291 -9 1534 160 26 4 chr4_random 8638462 8638731 -10213082 + L1PA15 LINE L1 5884 6158 -7 2185 97 3 3 chr4_random 8640107 8640415 -10211398 - AluSx SINE Alu -4 308 1 1493 107 8 49 chr4_random 8640415 8640658 -10211155 + L1P4 LINE L1 5466 5698 -465 2167 102 7 0 chr4_random 8642233 8642518 -10209295 - AluSp SINE Alu -26 287 1 464 298 161 68 chr4_random 8643478 8643844 -10207969 + L2 LINE L2 2846 3245 -68 25 75 0 0 chr4_random 8643900 8643953 -10207860 + AT_rich Low_complexity Low_complexity 1 53 0 1559 156 3 103 chr4_random 8644020 8644359 -10207454 + AluJo SINE Alu 1 305 -7 25 0 0 0 chr4_random 8645032 8645057 -10206756 + AT_rich Low_complexity Low_complexity 1 25 0 776 203 103 103 chr4_random 8646030 8646399 -10205414 - L1M4 LINE L1 -1186 4960 4592 2360 65 10 0 chr4_random 8647800 8648094 -10203719 - AluY SINE Alu -14 297 1 2611 127 93 8 chr4_random 8648608 8649079 -10202734 + MER9 LTR ERVK 1 511 0 37323 102 3 7 chr4_random 8649079 8654283 -10197530 + HERVK9 LTR ERVK 1 5186 -730 573 296 9 14 chr4_random 8654257 8654473 -10197340 + HERVK9 LTR ERVK 5975 6189 -1764 * 3255 118 2 0 chr4_random 8654486 8654937 -10196876 + HERVK9 LTR ERVK 5183 5634 -282 1858 123 4 4 chr4_random 8655037 8655305 -10196508 + HERVK9 LTR ERVK 5633 5900 -16 2619 117 92 9 chr4_random 8655307 8655761 -10196052 + MER9 LTR ERVK 20 511 0 899 291 107 73 chr4_random 8656502 8657065 -10194748 - MLT1G1 LTR MaLR -13 582 1 22 35 0 0 chr4_random 8657305 8657334 -10194479 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4_random 8657860 8657883 -10193930 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr4_random 8657969 8657991 -10193822 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 762 282 65 73 chr4_random 8658097 8658561 -10193252 - LTR16B LTR ERVL -4 460 1 2277 166 28 21 chr4_random 8658636 8659059 -10192754 + MSTB LTR MaLR 1 426 0 1113 244 154 71 chr4_random 8659893 8660665 -10191148 - L1ME2 LINE L1 -9 6155 5320 835 263 103 20 chr4_random 8660713 8661170 -10190643 + L1M4 LINE L1 4336 4830 -1316 188 372 43 16 chr4_random 8661565 8661753 -10190060 - MIR SINE MIR 0 262 70 34 42 0 0 chr4_random 8663389 8663437 -10188376 + AT_rich Low_complexity Low_complexity 1 48 0 428 235 140 18 chr4_random 8664188 8664473 -10187340 + L1MEc LINE L1 1914 2233 -4163 623 277 62 13 chr4_random 8664485 8665014 -10186799 - MLT1E3 LTR MaLR -8 616 1 356 244 101 25 chr4_random 8665321 8665439 -10186374 + LTR40a LTR ERVL 67 193 -326 2031 91 114 8 chr4_random 8665439 8665802 -10186011 + LTR7 LTR ERV1 1 450 0 578 299 4 79 chr4_random 8665802 8666157 -10185656 + LTR40a LTR ERVL 132 519 0 1071 121 75 67 chr4_random 8666173 8666201 -10185612 + L1MA8 LINE L1 6046 6072 -219 1870 117 3 42 chr4_random 8666201 8666509 -10185304 + AluSx SINE Alu 1 296 -16 1071 121 75 67 chr4_random 8666509 8666719 -10185094 + L1MA8 LINE L1 6072 6286 -5 634 239 63 0 chr4_random 8666742 8666964 -10184849 + L1M4 LINE L1 4980 5215 -931 739 299 44 70 chr4_random 8666992 8667011 -10184802 + L2 LINE L2 2675 2693 -620 2030 119 10 10 chr4_random 8667011 8667314 -10184499 - AluSx SINE Alu -9 303 1 739 299 44 70 chr4_random 8667314 8667945 -10183868 + L2 LINE L2 2693 3313 0 1523 211 20 76 chr4_random 8668302 8668365 -10183448 - L1MD3 LINE L1 -57 7938 7873 1466 171 42 79 chr4_random 8668365 8668744 -10183069 - MLT1A1 LTR MaLR 0 365 1 1523 211 20 76 chr4_random 8668744 8669140 -10182673 - L1MD3 LINE L1 -122 7873 7505 1991 241 11 9 chr4_random 8669170 8669622 -10182191 + MER74C LTR ERVL 8 460 0 1250 244 39 18 chr4_random 8669622 8670004 -10181809 - L1MC3 LINE L1 -484 7301 6912 698 271 11 6 chr4_random 8670004 8670185 -10181628 + MER76 LTR ERV 1 182 -506 392 119 17 0 chr4_random 8670208 8670267 -10181546 - MER76 LTR ERV -566 122 63 24 0 0 0 chr4_random 8670917 8670941 -10180872 + AT_rich Low_complexity Low_complexity 1 24 0 306 349 114 20 chr4_random 8671763 8671912 -10179901 + MIR SINE MIR 68 230 -32 32 57 0 0 chr4_random 8672729 8672782 -10179031 + AT_rich Low_complexity Low_complexity 1 53 0 497 42 67 17 chr4_random 8672834 8672954 -10178859 + (TA)n Simple_repeat Simple_repeat 1 126 0 1459 156 48 54 chr4_random 8673949 8674263 -10177550 + L1PA16 LINE L1 5338 5649 -517 2754 165 39 2 chr4_random 8674342 8674833 -10176980 + L1PA16 LINE L1 5649 6157 -9 737 340 17 7 chr4_random 8674847 8675141 -10176672 - ERVL LTR ERVL -649 5115 4819 902 230 44 5 chr4_random 8675200 8675404 -10176409 + MSTA LTR MaLR 217 428 0 2864 175 8 0 chr4_random 8675404 8675912 -10175901 + MSTA-int LTR MaLR 1 512 -1139 1886 158 3 10 chr4_random 8675912 8676210 -10175603 + AluSx SINE Alu 1 296 -16 562 245 0 0 chr4_random 8676252 8676358 -10175455 + MSTA-int LTR MaLR 731 836 -815 3852 180 17 31 chr4_random 8676372 8677133 -10174680 - MST-int LTR MaLR -50 1601 852 378 102 0 0 chr4_random 8677133 8677182 -10174631 + MSTB LTR MaLR 378 426 0 644 225 53 69 chr4_random 8677183 8677451 -10174362 - ERVL LTR ERVL -1042 4485 4179 294 317 137 25 chr4_random 8677809 8677970 -10173843 - MIR SINE MIR 0 262 84 198 388 95 0 chr4_random 8678120 8678236 -10173577 - L2 LINE L2 -1153 2161 2035 3299 250 55 39 chr4_random 8678869 8679965 -10171848 - L1MC3 LINE L1 -605 7180 6068 465 274 75 66 chr4_random 8680059 8680848 -10170965 + L1M4 LINE L1 2506 3301 -2845 23 54 0 0 chr4_random 8681845 8681882 -10169931 + AT_rich Low_complexity Low_complexity 1 37 0 2258 112 0 6 chr4_random 8681903 8682217 -10169596 + AluSx SINE Alu 1 312 0 183 42 0 0 chr4_random 8682261 8682285 -10169528 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr4_random 8682916 8682939 -10168874 + AT_rich Low_complexity Low_complexity 1 23 0 229 308 99 0 chr4_random 8683552 8683643 -10168170 + MER93b LTR ERV1 19 118 -255 2429 80 0 0 chr4_random 8683681 8683992 -10167821 + AluY SINE Alu 1 311 0 408 320 122 5 chr4_random 8684034 8684231 -10167582 + MER57A LTR ERV1 134 353 -50 978 148 35 5 chr4_random 8685340 8685543 -10166270 - L1MA7 LINE L1 -1 6290 6082 23 0 0 0 chr4_random 8685934 8685957 -10165856 + AT_rich Low_complexity Low_complexity 1 23 0 789 233 112 24 chr4_random 8686651 8687091 -10164722 + MLT1D LTR MaLR 1 505 0 242 197 16 16 chr4_random 8687118 8687179 -10164634 + (TA)n Simple_repeat Simple_repeat 1 61 0 317 225 54 36 chr4_random 8688402 8688513 -10163300 + L1MEc LINE L1 1106 1218 -5178 1623 135 0 15 chr4_random 8688517 8688784 -10163029 - MER46B DNA MER2_type 0 236 99 279 286 88 74 chr4_random 8688855 8689560 -10162253 + L1MEc LINE L1 1586 2300 -4096 3077 261 45 47 chr4_random 8689906 8690624 -10161189 - L1P LINE L1 -3222 2924 2207 233 29 29 0 chr4_random 8690624 8690658 -10161155 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 3077 261 45 47 chr4_random 8690658 8691197 -10160616 - L1P LINE L1 -3939 2207 1669 2319 256 8 8 chr4_random 8691214 8691873 -10159940 + L1 LINE L1 4540 5198 -948 639 154 35 63 chr4_random 8691918 8692061 -10159752 + L1P5 LINE L1 5642 5780 -371 375 78 0 0 chr4_random 8692063 8692114 -10159699 + (CA)n Simple_repeat Simple_repeat 2 52 0 832 102 0 0 chr4_random 8692120 8692238 -10159575 - L1PB2 LINE L1 -252 5899 5782 8871 149 53 4 chr4_random 8742525 8743991 -10107822 + THE1C-int LTR MaLR 43 1580 0 2350 146 3 3 chr4_random 8743991 8744362 -10107451 + THE1C LTR MaLR 1 371 -4 1296 323 90 54 chr4_random 8744376 8744427 -10107386 - L2 LINE L2 -1696 1618 1570 2117 178 28 39 chr4_random 8744427 8744860 -10106953 + MSTA LTR MaLR 1 428 0 1296 323 90 54 chr4_random 8744860 8745770 -10106043 - L2 LINE L2 -1744 1570 622 217 346 71 47 chr4_random 8745784 8745911 -10105902 - L2 LINE L2 -2839 475 346 246 32 0 0 chr4_random 8746140 8746171 -10105642 + (TA)n Simple_repeat Simple_repeat 1 31 0 2088 90 20 13 chr4_random 8746174 8746474 -10105339 - AluY SINE Alu -8 303 2 1523 233 116 30 chr4_random 8747176 8747609 -10104204 + MLT2F LTR ERVL 186 655 -8 27 73 0 0 chr4_random 8747689 8747744 -10104069 + AT_rich Low_complexity Low_complexity 1 55 0 2315 217 83 32 chr4_random 8748566 8749256 -10102557 - MER50 LTR ERV1 0 734 10 12787 183 30 24 chr4_random 8749294 8749385 -10102428 + L1M1 LINE L1 17 106 -7459 192 40 0 0 chr4_random 8749385 8749410 -10102403 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 12787 183 30 24 chr4_random 8749410 8751810 -10100003 + L1M1 LINE L1 106 2523 -5042 342 62 0 0 chr4_random 8751811 8751859 -10099954 - Alu SINE Alu -5 295 248 1925 136 33 3 chr4_random 8752845 8753177 -10098636 - MER6 DNA MER2_type 0 865 524 26 0 0 0 chr4_random 8753509 8753535 -10098278 + AT_rich Low_complexity Low_complexity 1 26 0 2045 136 0 0 chr4_random 8753578 8753888 -10097925 + AluSx SINE Alu 2 311 0 21 0 0 0 chr4_random 8754083 8754104 -10097709 + AT_rich Low_complexity Low_complexity 1 21 0 1967 113 10 7 chr4_random 8754537 8754828 -10096985 - AluSc SINE Alu -17 292 1 1374 240 109 76 chr4_random 8755329 8755501 -10096312 - MER50 LTR ERV1 0 734 569 1697 176 52 19 chr4_random 8755501 8755864 -10095949 + THE1C LTR MaLR 1 375 0 1374 240 109 76 chr4_random 8755864 8756386 -10095427 - MER50 LTR ERV1 -165 569 17 240 35 0 0 chr4_random 8756618 8756647 -10095166 + (T)n Simple_repeat Simple_repeat 1 29 0 5220 94 19 4 chr4_random 8756718 8757473 -10094340 + MER4E LTR ERV1 1 766 0 4050 185 21 34 chr4_random 8757473 8758295 -10093518 + MER4E-int LTR ERV1 1 811 -5947 276 270 20 10 chr4_random 8761273 8761373 -10090440 + (CGGGG)n Simple_repeat Simple_repeat 1 101 0 512 130 20 20 chr4_random 8761414 8761431 -10090382 + L1M1 LINE L1 2531 2547 -5018 2121 96 0 7 chr4_random 8761431 8761734 -10090079 + AluY SINE Alu 11 311 0 512 130 20 20 chr4_random 8761734 8761816 -10089997 + L1M1 LINE L1 2546 2630 -4935 261 200 6 0 chr4_random 8762592 8762650 -10089163 + Alu SINE Alu 245 292 -10 26 30 0 0 chr4_random 8762774 8762807 -10089006 + AT_rich Low_complexity Low_complexity 1 33 0 190 312 54 54 chr4_random 8763820 8763913 -10087900 + MIR SINE MIR 166 258 -4 23 0 0 0 chr4_random 8764044 8764067 -10087746 + AT_rich Low_complexity Low_complexity 1 23 0 30 117 0 0 chr4_random 8765242 8765405 -10086408 + AT_rich Low_complexity Low_complexity 1 163 0 683 78 20 0 chr4_random 8765563 8765665 -10086148 + L1M1 LINE L1 2527 2630 -4935 25 0 0 0 chr4_random 8765878 8765903 -10085910 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr4_random 8766658 8766687 -10085126 + AT_rich Low_complexity Low_complexity 1 29 0 471 337 35 0 chr4_random 8766718 8766887 -10084926 - MIR SINE MIR -13 249 75 23 0 0 0 chr4_random 8766934 8766957 -10084856 + AT_rich Low_complexity Low_complexity 1 23 0 548 347 52 31 chr4_random 8767360 8767882 -10083931 - L1ME3A LINE L1 -286 5884 5352 403 346 126 25 chr4_random 8767910 8768632 -10083181 - L1ME3A LINE L1 -869 5277 4483 1092 130 0 0 chr4_random 8768640 8768845 -10082968 - AluY SINE Alu 0 311 127 635 314 57 90 chr4_random 8768892 8769592 -10082221 - L1ME3A LINE L1 -3314 2832 2156 24 96 0 0 chr4_random 8769642 8769715 -10082098 + AT_rich Low_complexity Low_complexity 1 73 0 24 85 0 0 chr4_random 8770466 8770525 -10081288 + AT_rich Low_complexity Low_complexity 1 59 0 28 0 0 0 chr4_random 8772032 8772060 -10079753 + AT_rich Low_complexity Low_complexity 1 28 0 237 65 0 0 chr4_random 8773289 8773320 -10078493 + (TG)n Simple_repeat Simple_repeat 1 31 0 201 74 0 0 chr4_random 8774208 8774235 -10077578 + (T)n Simple_repeat Simple_repeat 1 27 0 1848 152 3 3 chr4_random 8776443 8776746 -10075067 - AluSx SINE Alu -9 303 1 4750 184 6 7 chr4_random 8776927 8777069 -10074744 - L1P LINE L1 -1393 4753 4612 1516 45 27 76 chr4_random 8777069 8777292 -10074521 + AluY SINE Alu 86 297 -14 4750 184 6 7 chr4_random 8777292 8778055 -10073758 - L1P LINE L1 -1534 4612 3849 5763 132 14 0 chr4_random 8778055 8779462 -10072351 + L1PA11 LINE L1 4765 6166 -8 207 0 0 0 chr4_random 8779469 8779492 -10072321 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 25 31 0 0 chr4_random 8779552 8779584 -10072229 + AT_rich Low_complexity Low_complexity 1 32 0 6626 227 55 23 chr4_random 8781048 8782660 -10069153 - MER52A LTR ERV1 0 1755 17 645 367 93 13 chr4_random 8783348 8783916 -10067897 - L2 LINE L2 0 3313 2702 1183 309 84 49 chr4_random 8783974 8784628 -10067185 - L2 LINE L2 -889 2425 1749 2188 142 16 3 chr4_random 8784764 8785130 -10066683 + THE1C LTR MaLR 1 371 -4 2153 41 44 4 chr4_random 8785183 8785454 -10066359 + AluY SINE Alu 28 309 -2 1145 95 19 0 chr4_random 8785557 8785715 -10066098 - AluY SINE Alu -150 161 1 5462 75 16 9 chr4_random 8787052 8787813 -10064000 + MER4E LTR ERV1 1 766 0 190 302 0 0 chr4_random 8788097 8788140 -10063673 - L2 LINE L2 -20 3293 3251 23 0 0 0 chr4_random 8788330 8788353 -10063460 + AT_rich Low_complexity Low_complexity 1 23 0 225 132 0 0 chr4_random 8788718 8788756 -10063057 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 1461 156 34 15 chr4_random 8789157 8789478 -10062335 - MER83 LTR ERV1 0 448 81 705 341 92 36 chr4_random 8790417 8791170 -10060643 + L2 LINE L2 2459 3247 -66 2162 125 0 7 chr4_random 8791449 8791752 -10060061 + AluSq SINE Alu 1 301 -12 277 253 74 58 chr4_random 8791852 8792042 -10059771 + L1M4c LINE L1 1300 1492 -4892 2047 153 0 3 chr4_random 8792070 8792383 -10059430 + AluSx SINE Alu 1 312 0 2018 127 0 3 chr4_random 8792477 8792777 -10059036 - AluSg SINE Alu -11 299 1 2086 51 47 11 chr4_random 8793064 8793338 -10058475 - AluY SINE Alu -27 284 1 23 0 0 0 chr4_random 8793338 8793361 -10058452 + AT_rich Low_complexity Low_complexity 1 23 0 443 323 101 18 chr4_random 8794423 8794640 -10057173 + L2 LINE L2 2551 2785 -529 1873 196 83 8 chr4_random 8796789 8797187 -10054626 - MSTA LTR MaLR 0 428 1 8033 195 35 11 chr4_random 8797187 8798797 -10053016 - MSTA-int LTR MaLR 0 1651 2 2021 133 128 18 chr4_random 8798800 8799184 -10052629 - MSTA LTR MaLR -2 426 1 351 0 0 0 chr4_random 8799520 8799559 -10052254 + (TA)n Simple_repeat Simple_repeat 2 40 0 1526 200 11 11 chr4_random 8799606 8799891 -10051922 + AluJb SINE Alu 7 291 -21 28 0 0 0 chr4_random 8800119 8800147 -10051666 + AT_rich Low_complexity Low_complexity 1 28 0 332 355 62 30 chr4_random 8800185 8800624 -10051189 + L1MC/D LINE L1 4615 5067 -1079 496 340 58 30 chr4_random 8800836 8801265 -10050548 + L1MC/D LINE L1 5295 5735 -2073 213 265 29 0 chr4_random 8801752 8801820 -10049993 + (CATATA)n Simple_repeat Simple_repeat 1 70 0 634 240 32 84 chr4_random 8803905 8804155 -10047658 - L2 LINE L2 0 3313 3077 349 307 257 20 chr4_random 8804310 8804677 -10047136 - L2 LINE L2 -282 3031 2575 380 323 141 10 chr4_random 8804681 8804873 -10046940 - L2 LINE L2 -1772 1542 1326 22 0 0 0 chr4_random 8806056 8806078 -10045735 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4_random 8806173 8806195 -10045618 + AT_rich Low_complexity Low_complexity 1 22 0 813 301 164 2 chr4_random 8806197 8806665 -10045148 - L1MC4 LINE L1 -413 7629 7086 199 278 22 67 chr4_random 8806966 8807056 -10044757 - L2 LINE L2 -4 3268 3183 324 48 0 0 chr4_random 8807445 8807487 -10044326 + (CA)n Simple_repeat Simple_repeat 1 42 0 1896 120 18 0 chr4_random 8807595 8807869 -10043944 - AluSc SINE Alu -10 299 21 272 260 225 30 chr4_random 8808079 8808248 -10043565 + MIR SINE MIR 61 262 0 27 29 0 0 chr4_random 8808480 8808514 -10043299 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr4_random 8808653 8808674 -10043139 + AT_rich Low_complexity Low_complexity 1 21 0 198 387 22 50 chr4_random 8809606 8809787 -10042026 - MIR3 SINE MIR -28 180 5 237 33 0 0 chr4_random 8810062 8810092 -10041721 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2349 85 0 0 chr4_random 8810155 8810450 -10041363 + AluSg SINE Alu 1 295 -15 6509 195 32 15 chr4_random 8810560 8812514 -10039299 + Ricksha_c DNA DNA 9 2046 0 4056 200 69 10 chr4_random 8813186 8814243 -10037570 + L1MC2 LINE L1 5199 6316 -28 39 0 0 0 chr4_random 8814447 8814486 -10037327 + AT_rich Low_complexity Low_complexity 1 39 0 1856 261 71 20 chr4_random 8814802 8815476 -10036337 - L1MD3 LINE L1 -8 7987 7005 275 85 21 0 chr4_random 8815476 8815523 -10036290 + (TTTA)n Simple_repeat Simple_repeat 4 51 0 1856 261 71 20 chr4_random 8815523 8815654 -10036159 - L1MD3 LINE L1 -990 7005 6882 2180 112 3 0 chr4_random 8815656 8815961 -10035852 - AluSg SINE Alu -4 306 1 26 0 0 0 chr4_random 8815970 8815996 -10035817 + AT_rich Low_complexity Low_complexity 1 26 0 719 268 176 37 chr4_random 8816172 8816552 -10035261 - L2 LINE L2 -466 2848 2416 26 74 0 0 chr4_random 8816598 8816652 -10035161 + AT_rich Low_complexity Low_complexity 1 54 0 222 231 19 0 chr4_random 8817289 8817341 -10034472 + (CATATA)n Simple_repeat Simple_repeat 5 57 0 225 94 0 0 chr4_random 8818059 8818091 -10033722 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 25 51 0 0 chr4_random 8818713 8818752 -10033061 + AT_rich Low_complexity Low_complexity 1 39 0 52 64 0 0 chr4_random 8819313 8819407 -10032406 + AT_rich Low_complexity Low_complexity 1 94 0 225 0 0 0 chr4_random 8819661 8819686 -10032127 + (CA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr4_random 8820205 8820228 -10031585 + AT_rich Low_complexity Low_complexity 1 23 0 218 335 49 78 chr4_random 8820392 8820637 -10031176 + MIR SINE MIR 25 262 0 195 42 0 0 chr4_random 8820982 8821006 -10030807 + (CA)n Simple_repeat Simple_repeat 2 25 0 1450 323 89 20 chr4_random 8821025 8821955 -10029858 + L2 LINE L2 1697 2755 -559 470 326 83 21 chr4_random 8821952 8822240 -10029573 + L2 LINE L2 3005 3310 -3 * 23 0 0 0 chr4_random 8822697 8822720 -10029093 + AT_rich Low_complexity Low_complexity 1 23 0 316 283 91 0 chr4_random 8823135 8823234 -10028579 + MIR SINE MIR 59 166 -96 266 336 8 15 chr4_random 8823285 8823416 -10028397 + CT-rich Low_complexity Low_complexity 2 131 0 252 0 0 0 chr4_random 8823668 8823696 -10028117 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 105 0 0 chr4_random 8823716 8823754 -10028059 + (CTTG)n Simple_repeat Simple_repeat 2 39 0 519 360 70 29 chr4_random 8823806 8824333 -10027480 - L2 LINE L2 -969 2345 1797 563 293 122 4 chr4_random 8824672 8824935 -10026878 + MER5C DNA MER1_type 29 322 -2 2559 144 22 0 chr4_random 8826235 8826652 -10025161 - MSTA LTR MaLR 0 428 3 7958 191 37 28 chr4_random 8826655 8827956 -10023857 - MSTA-int LTR MaLR 0 1651 331 1179 117 5 44 chr4_random 8827956 8828161 -10023652 + MER107 DNA MER1_type 1 197 0 7958 191 37 28 chr4_random 8828161 8828479 -10023334 - MSTA-int LTR MaLR -1320 331 17 2229 191 24 5 chr4_random 8828479 8828899 -10022914 - MSTA LTR MaLR 0 428 1 23 54 0 0 chr4_random 8829114 8829151 -10022662 + AT_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr4_random 8829251 8829272 -10022541 + (CA)n Simple_repeat Simple_repeat 2 22 0 1240 208 75 91 chr4_random 8829313 8829383 -10022430 - MLT1A1 LTR MaLR 0 365 295 406 213 138 0 chr4_random 8829383 8829477 -10022336 + U6 snRNA snRNA 1 107 0 1240 208 75 91 chr4_random 8829477 8829767 -10022046 - MLT1A1 LTR MaLR -70 295 11 580 168 72 8 chr4_random 8830102 8830227 -10021586 - L1PA15 LINE L1 -1306 4840 4708 * 4947 174 37 14 chr4_random 8830217 8831511 -10020302 + L1PA15 LINE L1 4854 6165 0 1894 147 3 26 chr4_random 8831951 8832263 -10019550 + AluSx SINE Alu 1 305 -7 308 319 69 12 chr4_random 8832283 8832443 -10019370 + MIR SINE MIR 84 252 -10 448 279 59 46 chr4_random 8832480 8832699 -10019114 + MIR SINE MIR 3 224 -38 22 0 0 0 chr4_random 8833387 8833409 -10018404 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr4_random 8833463 8833501 -10018312 + AT_rich Low_complexity Low_complexity 1 38 0 270 376 80 14 chr4_random 8833845 8834132 -10017681 + MLT1I LTR MaLR 81 386 -23 706 327 109 26 chr4_random 8834861 8835210 -10016603 + MLT1I LTR MaLR 32 409 0 466 320 29 0 chr4_random 8835710 8835885 -10015928 - L2 LINE L2 -952 2362 2183 499 390 18 7 chr4_random 8836538 8836812 -10015001 - MLT1I LTR MaLR -45 364 88 4772 231 40 87 chr4_random 8837379 8839305 -10012508 + L1M4 LINE L1 3455 5290 -856 431 226 0 10 chr4_random 8839314 8839416 -10012397 + L1MC1 LINE L1 3818 3918 -2228 * 5420 167 47 3 chr4_random 8839411 8840410 -10011403 + L1MC1 LINE L1 5290 6332 -1 2031 124 22 102 chr4_random 8840670 8841082 -10010731 + Tigger2a DNA MER2_type 1 379 -55 8143 215 50 98 chr4_random 8841095 8844771 -10007042 + L1MA4 LINE L1 1 3526 -3682 226 97 0 0 chr4_random 8844792 8844823 -10006990 + (TG)n Simple_repeat Simple_repeat 1 31 0 655 51 83 6 chr4_random 8844823 8844979 -10006834 + (TA)n Simple_repeat Simple_repeat 1 168 0 8245 185 24 41 chr4_random 8844991 8847353 -10004460 + L1MA4 LINE L1 4468 6802 -563 2175 161 23 49 chr4_random 8847354 8847826 -10003987 + L1MA4 LINE L1 6897 7356 -6 230 182 159 0 chr4_random 8847839 8847883 -10003930 + Tigger2a DNA MER2_type 391 441 -3 483 18 0 0 chr4_random 8847883 8847939 -10003874 + (TG)n Simple_repeat Simple_repeat 2 57 0 183 205 0 0 chr4_random 8848188 8848227 -10003586 + (TA)n Simple_repeat Simple_repeat 1 39 0 307 91 0 0 chr4_random 8848331 8848375 -10003438 - U5 snRNA snRNA -72 44 1 180 0 0 0 chr4_random 8848659 8848679 -10003134 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 852 225 0 5 chr4_random 8848700 8848887 -10002926 - AluJb SINE Alu -126 186 1 24 0 0 0 chr4_random 8850454 8850478 -10001335 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr4_random 8850625 8850656 -10001157 + AT_rich Low_complexity Low_complexity 1 31 0 34 55 0 0 chr4_random 8851297 8851352 -10000461 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr4_random 8851750 8851773 -10000040 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr4_random 8852224 8852259 -9999554 + AT_rich Low_complexity Low_complexity 1 35 0 3976 37 0 0 chr4_random 8852275 8852758 -9999055 + L1PA4 LINE L1 5671 6153 -2 273 29 0 0 chr4_random 8853084 8853118 -9998695 + (TA)n Simple_repeat Simple_repeat 2 35 0 597 82 0 70 chr4_random 8853887 8854058 -9997755 + (TA)n Simple_repeat Simple_repeat 1 159 0 22 0 0 0 chr4_random 8854080 8854102 -9997711 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4_random 8854404 8854426 -9997387 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr4_random 8854723 8854779 -9997034 + AT_rich Low_complexity Low_complexity 1 56 0 22 56 0 0 chr4_random 8855961 8855997 -9995816 + AT_rich Low_complexity Low_complexity 1 36 0 338 256 28 83 chr4_random 8856114 8856294 -9995519 - LTR54B LTR ERV1 -2 496 327 26 0 0 0 chr4_random 8856374 8856400 -9995413 + AT_rich Low_complexity Low_complexity 1 26 0 234 180 68 50 chr4_random 8856568 8856729 -9995084 + (TTTAA)n Simple_repeat Simple_repeat 2 165 0 25 65 0 0 chr4_random 8856734 8856780 -9995033 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr4_random 8858012 8858040 -9993773 + AT_rich Low_complexity Low_complexity 1 28 0 568 301 49 29 chr4_random 8858139 8858385 -9993428 - MIR SINE MIR 0 262 12 2170 93 0 4 chr4_random 8859380 8859707 -9992106 + AluSg SINE Alu 1 326 0 23 33 0 0 chr4_random 8860546 8860576 -9991237 + AT_rich Low_complexity Low_complexity 1 30 0 12509 233 31 17 chr4_random 8860576 8864061 -9987752 - L1PA16 LINE L1 -5 6812 3213 4415 61 26 3 chr4_random 8864061 8864639 -9987174 + LTR10C LTR ERV1 1 591 0 12509 233 31 17 chr4_random 8864639 8866523 -9985290 - L1PA16 LINE L1 -3604 3213 1357 2386 293 10 32 chr4_random 8866674 8867445 -9984368 - L1PA16 LINE L1 -6033 754 1 22 35 0 0 chr4_random 8869623 8869652 -9982161 + AT_rich Low_complexity Low_complexity 1 29 0 23 78 0 0 chr4_random 8870345 8870396 -9981417 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr4_random 8870962 8870991 -9980822 + AT_rich Low_complexity Low_complexity 1 29 0 3726 198 25 49 chr4_random 8871117 8872096 -9979717 - LTR5 LTR ERVK -14 955 1 31 0 0 0 chr4_random 8872122 8872153 -9979660 + AT_rich Low_complexity Low_complexity 1 31 0 2066 92 24 14 chr4_random 8872164 8872457 -9979356 - AluY SINE Alu -15 296 1 384 366 82 49 chr4_random 8873791 8874591 -9977222 + L2 LINE L2 1803 2629 -685 638 198 24 8 chr4_random 8874959 8875085 -9976728 + FLAM_A SINE Alu 4 131 -2 284 100 0 20 chr4_random 8875548 8875598 -9976215 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 2238 141 24 42 chr4_random 8876240 8876401 -9975412 - L1MA4A LINE L1 -5 6298 6136 1431 180 58 11 chr4_random 8876401 8876679 -9975134 + AluJo SINE Alu 1 291 -21 2238 141 24 42 chr4_random 8876679 8876971 -9974842 - L1MA4A LINE L1 -167 6136 5853 1110 187 76 160 chr4_random 8877124 8877573 -9974240 - MLT2D LTR ERVL -3 411 1 2077 122 7 0 chr4_random 8878543 8878838 -9972975 + AluSp SINE Alu 1 297 -16 33 73 0 0 chr4_random 8878840 8878908 -9972905 + AT_rich Low_complexity Low_complexity 1 68 0 351 321 35 61 chr4_random 8879168 8879511 -9972302 - L2 LINE L2 -559 2755 2422 1437 174 69 44 chr4_random 8879524 8879887 -9971926 + THE1C LTR MaLR 3 374 -1 1001 158 17 6 chr4_random 8879888 8880065 -9971748 + THE1C-int LTR MaLR 1 179 -1401 357 104 30 30 chr4_random 8880067 8880134 -9971679 + THE1C-int LTR MaLR 1509 1575 -5 1558 166 42 70 chr4_random 8880139 8880525 -9971288 + THE1C LTR MaLR 1 375 0 236 295 137 21 chr4_random 8880536 8880631 -9971182 - L2 LINE L2 -927 2387 2282 3451 150 12 11 chr4_random 8881212 8881771 -9970042 + THE1C-int LTR MaLR 560 1119 -461 233 224 17 0 chr4_random 8881927 8881985 -9969828 + (TG)n Simple_repeat Simple_repeat 2 60 0 216 0 0 0 chr4_random 8882042 8882066 -9969747 + (T)n Simple_repeat Simple_repeat 1 24 0 6352 21 9 0 chr4_random 8882261 8883005 -9968808 - L1PA4 LINE L1 -1 6154 5404 357 240 33 7 chr4_random 8883667 8883817 -9967996 + (TA)n Simple_repeat Simple_repeat 2 155 0 30 0 0 0 chr4_random 8883993 8884023 -9967790 + AT_rich Low_complexity Low_complexity 1 30 0 267 79 0 0 chr4_random 8884368 8884406 -9967407 + (TG)n Simple_repeat Simple_repeat 2 39 0 24 0 0 29 chr4_random 8885492 8885511 -9966302 + AT_rich Low_complexity Low_complexity 1 20 -14 240 35 0 0 chr4_random 8885511 8885540 -9966273 + (CA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 29 chr4_random 8885540 8885555 -9966258 + AT_rich Low_complexity Low_complexity 20 34 0 196 303 67 39 chr4_random 8885629 8885807 -9966006 - L2 LINE L2 -39 3274 3092 7120 205 55 61 chr4_random 8885842 8886359 -9965454 - MER52A LTR ERV1 -2 1753 1235 1918 145 3 17 chr4_random 8886359 8886655 -9965158 - AluSp SINE Alu -21 292 1 7120 205 55 61 chr4_random 8886655 8887900 -9963913 - MER52A LTR ERV1 -520 1235 1 228 338 168 25 chr4_random 8887946 8888475 -9963338 - L2 LINE L2 -2170 1144 540 12425 45 1 3 chr4_random 8888526 8890852 -9960961 - L1PA5 LINE L1 -8 6146 3834 10100 54 7 0 chr4_random 8890852 8892156 -9959657 + L1PA5 LINE L1 2539 3851 -2295 748 231 0 6 chr4_random 8892354 8892510 -9959303 - MER1A DNA MER1_type 0 533 379 2619 156 10 2 chr4_random 8892720 8893130 -9958683 - MER1A DNA MER1_type -116 413 1 472 286 128 51 chr4_random 8894842 8895323 -9956490 - L1MEd LINE L1 -4910 1209 771 238 171 0 0 chr4_random 8895461 8895496 -9956317 - L1MEd LINE L1 -5488 631 597 804 186 31 0 chr4_random 8895759 8895920 -9955893 - Charlie3 DNA MER1_type -2544 166 1 2771 9 0 13 chr4_random 8896957 8897274 -9954539 - AluYb8 SINE Alu -5 313 1 472 286 128 51 chr4_random 8897962 8898443 -9953370 - L1MEd LINE L1 -4910 1209 771 238 171 0 0 chr4_random 8898581 8898616 -9953197 - L1MEd LINE L1 -5488 631 597 417 289 85 81 chr4_random 8899127 8899872 -9951941 - L1MEd LINE L1 -5008 1111 364 699 203 16 0 chr4_random 8900363 8900491 -9951322 - FLAM_C SINE Alu -13 130 1 481 244 34 94 chr4_random 8902109 8902343 -9949470 - L1ME3A LINE L1 0 6170 5951 220 318 24 12 chr4_random 8903473 8903558 -9948255 + L2 LINE L2 3186 3271 -1 733 334 138 13 chr4_random 8904268 8904660 -9947153 - MLT1H LTR MaLR -108 441 1 275 222 9 74 chr4_random 8904660 8904767 -9947046 - MER115 DNA AcHobo -98 595 496 410 376 105 27 chr4_random 8904802 8905060 -9946753 - MER115 DNA AcHobo -328 365 88 550 309 103 0 chr4_random 8905426 8905630 -9946183 - MLT1E2 LTR MaLR -6 620 396 * 805 96 59 37 chr4_random 8905627 8905762 -9946051 - LTR10E LTR ERV1 -15 618 481 568 283 112 17 chr4_random 8905799 8906032 -9945781 - MLT1E2 LTR MaLR -235 391 137 234 259 52 0 chr4_random 8906099 8906157 -9945656 - MLT1E2 LTR MaLR -593 61 1 201 171 0 0 chr4_random 8906213 8906248 -9945565 + (TA)n Simple_repeat Simple_repeat 2 36 0 180 111 0 0 chr4_random 8906596 8906623 -9945190 + (TAA)n Simple_repeat Simple_repeat 3 29 0 962 346 130 10 chr4_random 8906869 8907478 -9944335 + L2 LINE L2 2039 2720 -594 1543 191 30 13 chr4_random 8907588 8907891 -9943922 - AluJb SINE Alu -1 311 4 21 57 0 0 chr4_random 8908183 8908218 -9943595 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr4_random 8908536 8908558 -9943255 + (T)n Simple_repeat Simple_repeat 1 22 0 1829 190 115 7 chr4_random 8908594 8909010 -9942803 - LOR1b LTR ERV1 0 461 1 38 68 0 0 chr4_random 8909710 8909783 -9942030 + AT_rich Low_complexity Low_complexity 1 73 0 203 255 0 20 chr4_random 8909960 8910011 -9941802 + L2 LINE L2 3264 3313 0 1460 249 76 29 chr4_random 8910893 8911407 -9940406 - L1MD2 LINE L1 -175 6253 5716 768 234 43 25 chr4_random 8911410 8911688 -9940125 - L1MD2 LINE L1 -853 5362 5080 411 296 96 41 chr4_random 8912173 8912632 -9939181 - L1MD2 LINE L1 -4657 1739 1256 23 0 0 0 chr4_random 8912767 8912790 -9939023 + AT_rich Low_complexity Low_complexity 1 23 0 2431 62 0 3 chr4_random 8913709 8914015 -9937798 - AluY SINE Alu -6 305 1 204 318 28 0 chr4_random 8915182 8915289 -9936524 + (TATATG)n Simple_repeat Simple_repeat 4 113 0 434 18 18 0 chr4_random 8916373 8916428 -9935385 + (CA)n Simple_repeat Simple_repeat 2 57 0 21 0 0 0 chr4_random 8916724 8916745 -9935068 + AT_rich Low_complexity Low_complexity 1 21 0 1684 128 3 62 chr4_random 8916860 8917165 -9934648 - AluY SINE Alu -24 287 1 928 109 95 7 chr4_random 8917692 8917839 -9933974 - THE1C LTR MaLR 0 375 216 1480 176 20 37 chr4_random 8918018 8918314 -9933499 - AluJo SINE Alu -16 296 6 217 300 64 43 chr4_random 8918778 8918918 -9932895 + L2 LINE L2 307 449 -2865 21 36 0 0 chr4_random 8919264 8919292 -9932521 + AT_rich Low_complexity Low_complexity 1 28 0 310 373 0 8 chr4_random 8919343 8919477 -9932336 + L2 LINE L2 2880 3012 -301 1383 203 35 7 chr4_random 8919779 8920065 -9931748 + AluJb SINE Alu 1 294 -18 209 224 40 13 chr4_random 8920295 8920371 -9931442 + A-rich Low_complexity Low_complexity 6 83 0 21 0 0 0 chr4_random 8921813 8921834 -9929979 + AT_rich Low_complexity Low_complexity 1 21 0 569 246 22 32 chr4_random 8922053 8922224 -9929589 - MER61D LTR ERV1 -19 482 338 324 298 33 0 chr4_random 8922681 8922802 -9929011 - MER61D-int LTR ERV1 -1 8918 8794 * 1541 220 7 3 chr4_random 8922801 8923101 -9928712 - MER61D-int LTR ERV1 -4623 2468 2168 2760 277 51 49 chr4_random 8923140 8924734 -9927079 - MER61D-int LTR ERV1 -6205 886 19 584 233 37 34 chr4_random 8924738 8924974 -9926839 - MER61D LTR ERV1 -4 790 351 186 43 0 0 chr4_random 8925533 8925556 -9926257 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 22 35 0 0 chr4_random 8926763 8926792 -9925021 + AT_rich Low_complexity Low_complexity 1 29 0 268 266 0 0 chr4_random 8927039 8927103 -9924710 + Tigger6 DNA MER2_type 2 65 -1018 338 341 104 0 chr4_random 8927180 8927353 -9924460 - MIR SINE MIR -6 256 66 23 33 0 0 chr4_random 8927744 8927774 -9924039 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr4_random 8928909 8928939 -9922874 + AT_rich Low_complexity Low_complexity 1 30 0 243 331 99 17 chr4_random 8929271 8929443 -9922370 + L2 LINE L2 3127 3312 -1 410 300 102 24 chr4_random 8929824 8930117 -9921696 + L1ME4a LINE L1 5582 5897 -224 25 51 0 0 chr4_random 8930404 8930443 -9921370 + AT_rich Low_complexity Low_complexity 1 39 0 23 68 0 0 chr4_random 8930992 8931036 -9920777 + AT_rich Low_complexity Low_complexity 1 44 0 22 106 0 0 chr4_random 8932311 8932396 -9919417 + AT_rich Low_complexity Low_complexity 1 85 0 866 285 36 12 chr4_random 8932761 8933098 -9918715 + L1MD2 LINE L1 3728 4072 -2074 1832 157 3 31 chr4_random 8933108 8933426 -9918387 + AluSx SINE Alu 3 311 -1 1303 200 69 39 chr4_random 8933482 8933812 -9918001 - MLT1A1 LTR MaLR -7 419 19 3034 231 17 3 chr4_random 8933821 8934423 -9917390 - MLT1A1-int LTR MaLR -5 1730 1121 876 216 12 6 chr4_random 8934441 8934630 -9917183 - MER61E LTR ERV1 -6 606 341 240 203 0 130 chr4_random 8934722 8934791 -9917022 - MER61E LTR ERV1 -410 159 100 381 293 19 0 chr4_random 8934793 8934899 -9916914 - LTR25 LTR ERV1 -436 358 251 3791 227 44 58 chr4_random 8935038 8936082 -9915731 - MLT1A1-int LTR MaLR -562 1173 144 375 200 0 0 chr4_random 8936109 8936184 -9915629 - MLT1A1-int LTR MaLR -1660 75 1 1294 254 5 51 chr4_random 8936184 8936558 -9915255 - MLT1A1 LTR MaLR 0 365 9 772 264 26 35 chr4_random 8936565 8936796 -9915017 - MLT1A2 LTR MaLR -134 240 12 1694 243 61 11 chr4_random 8936804 8937558 -9914255 + L1MD2 LINE L1 4652 5444 -744 3381 186 110 13 chr4_random 8937579 8938326 -9913487 + LTR1B LTR ERV1 8 826 0 374 310 59 46 chr4_random 8938516 8938755 -9913058 - MER101B LTR ERV1 -271 299 58 2252 243 60 21 chr4_random 8938787 8939235 -9912578 + L1MD2 LINE L1 5433 5921 -438 4230 98 5 3 chr4_random 8939235 8939834 -9911979 - MER4A LTR ERV1 0 600 1 2252 243 60 21 chr4_random 8939834 8940101 -9911712 + L1MD2 LINE L1 5921 6176 -183 22 35 0 0 chr4_random 8940849 8940878 -9910935 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr4_random 8941505 8941536 -9910277 + AT_rich Low_complexity Low_complexity 1 31 0 345 109 0 0 chr4_random 8942323 8942378 -9909435 + (TA)n Simple_repeat Simple_repeat 1 55 0 215 31 31 0 chr4_random 8942377 8942409 -9909404 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 47 89 0 0 chr4_random 8942851 8942975 -9908838 + AT_rich Low_complexity Low_complexity 1 124 0 3317 93 159 34 chr4_random 8943036 8943267 -9908546 - MER41B LTR ERV1 -7 628 427 2154 129 0 0 chr4_random 8943267 8943297 -9908516 - AluSx SINE Alu -2 310 281 303 28 0 0 chr4_random 8943297 8943333 -9908480 + (TG)n Simple_repeat Simple_repeat 1 36 0 2154 129 0 0 chr4_random 8943333 8943612 -9908201 - AluSx SINE Alu -30 282 1 3317 93 159 34 chr4_random 8943612 8943938 -9907875 - MER41B LTR ERV1 -208 427 1 277 209 70 12 chr4_random 8944001 8944087 -9907726 + MLT2B1 LTR ERVL 411 501 -19 313 262 14 138 chr4_random 8944266 8944541 -9907272 + HAL1 LINE L1 1646 1886 -621 281 132 0 19 chr4_random 8944546 8944599 -9907214 + (GGAA)n Simple_repeat Simple_repeat 3 54 0 23 33 0 0 chr4_random 8944797 8944827 -9906986 + AT_rich Low_complexity Low_complexity 1 30 0 1136 114 120 0 chr4_random 8944835 8945010 -9906803 - AluSg SINE Alu -114 196 1 760 206 92 139 chr4_random 8945062 8945596 -9906217 - L1MC3 LINE L1 -1424 6373 5895 * 793 243 87 38 chr4_random 8945585 8945931 -9905882 - L1M4 LINE L1 -2185 3961 3599 441 0 0 0 chr4_random 8945951 8946000 -9905813 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 27 49 0 0 chr4_random 8946008 8946049 -9905764 + AT_rich Low_complexity Low_complexity 1 41 0 288 0 0 0 chr4_random 8946050 8946082 -9905731 + (TA)n Simple_repeat Simple_repeat 1 32 0 1831 53 0 22 chr4_random 8946137 8946363 -9905450 + AluY SINE Alu 86 306 -5 1865 261 129 35 chr4_random 8946487 8947899 -9903914 - L1MCb LINE L1 -4440 2124 570 1274 308 31 31 chr4_random 8948010 8948566 -9903247 - L1MCb LINE L1 -5489 556 1 2075 127 3 0 chr4_random 8948947 8949238 -9902575 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr4_random 8949529 8949552 -9902261 + AT_rich Low_complexity Low_complexity 1 23 0 4939 203 25 10 chr4_random 8950697 8951633 -9900180 + L1MA3 LINE L1 147 1096 -6469 3394 223 37 10 chr4_random 8951617 8953278 -9898535 + L1MA3 LINE L1 2988 4686 -2879 * 227 195 58 0 chr4_random 8953609 8953696 -9898117 + (CACAC)n Simple_repeat Simple_repeat 4 95 0 7797 177 28 26 chr4_random 8953842 8954132 -9897681 + L1MA3 LINE L1 4650 4938 -2786 2171 90 0 0 chr4_random 8954132 8954411 -9897402 + AluSc SINE Alu 1 279 -30 7797 177 28 26 chr4_random 8954411 8955091 -9896722 + L1MA3 LINE L1 4938 5615 -2109 1845 106 4 0 chr4_random 8955091 8955382 -9896431 + AluSx SINE Alu 35 326 0 7797 177 28 26 chr4_random 8955382 8957312 -9894501 + L1MA3 LINE L1 5615 7721 -3 22 0 0 73 chr4_random 8957892 8957933 -9893880 + AT_rich Low_complexity Low_complexity 1 38 0 1781 148 82 29 chr4_random 8958266 8958644 -9893169 - MER50 LTR ERV1 -336 398 1 1639 175 143 13 chr4_random 8959107 8959485 -9892328 + MSTA LTR MaLR 2 428 0 8503 159 6 48 chr4_random 8959487 8959646 -9892167 + MSTA-int LTR MaLR 3 167 -1413 1985 146 7 3 chr4_random 8959646 8959954 -9891859 - AluSq SINE Alu -4 309 1 8503 159 6 48 chr4_random 8959954 8961443 -9890370 + MSTA-int LTR MaLR 167 1580 0 1647 168 126 23 chr4_random 8961443 8961831 -9889982 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr4_random 8961914 8961937 -9889876 + AT_rich Low_complexity Low_complexity 1 23 0 2053 101 45 0 chr4_random 8962502 8962553 -9889260 - AluSc SINE Alu -10 299 252 183 42 0 0 chr4_random 8962553 8962577 -9889236 + (CAGTG)n Simple_repeat Simple_repeat 1 24 0 2053 101 45 0 chr4_random 8962577 8962811 -9889002 - AluSc SINE Alu -57 252 1 1348 167 4 4 chr4_random 8962973 8963200 -9888613 + AluSg/x SINE Alu 86 312 0 207 0 0 0 chr4_random 8963564 8963587 -9888226 + (CAA)n Simple_repeat Simple_repeat 2 24 0 419 335 48 19 chr4_random 8964779 8964988 -9886825 + MIR SINE MIR 1 215 -47 246 304 49 10 chr4_random 8965286 8965388 -9886425 - L2 LINE L2 -252 3061 2956 286 329 0 0 chr4_random 8965388 8965470 -9886343 - L1MEc LINE L1 -6148 248 167 2543 254 60 67 chr4_random 8965584 8965777 -9886036 - L1MC4 LINE L1 0 8042 7849 2071 133 0 3 chr4_random 8965777 8966079 -9885734 + AluSg SINE Alu 1 301 -9 2543 254 60 67 chr4_random 8966079 8967209 -9884604 - L1MC4 LINE L1 -193 7849 6727 620 303 25 8 chr4_random 8967363 8967601 -9884212 - L2 LINE L2 -936 2378 2137 616 372 89 9 chr4_random 8967638 8968087 -9883726 + L2 LINE L2 2827 3311 -2 2338 86 13 0 chr4_random 8968288 8968589 -9883224 - AluY SINE Alu -6 305 1 234 0 0 0 chr4_random 8968635 8968661 -9883152 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 609 143 0 10 chr4_random 8968666 8968764 -9883049 - AluSg/x SINE Alu -26 284 188 6190 186 210 19 chr4_random 8969917 8971390 -9880423 - MER52A LTR ERV1 -1 1754 1 31 0 0 0 chr4_random 8971405 8971436 -9880377 + AT_rich Low_complexity Low_complexity 1 31 0 2271 106 3 0 chr4_random 8971544 8971847 -9879966 + AluSp SINE Alu 1 304 -9 1861 120 58 4 chr4_random 8971853 8972129 -9879684 + AluSg SINE Alu 6 296 -14 2084 145 0 0 chr4_random 8973693 8974003 -9877810 + AluSx SINE Alu 1 310 -2 3850 150 2 25 chr4_random 8974725 8975063 -9876750 + L1PA14 LINE L1 4847 5191 -970 2317 71 0 0 chr4_random 8975063 8975346 -9876467 + AluY SINE Alu 1 307 0 217 0 0 0 chr4_random 8975346 8975370 -9876443 + (CAAAA)n Simple_repeat Simple_repeat 2 160 0 3850 150 2 25 chr4_random 8975370 8976053 -9875760 + L1PA14 LINE L1 5191 5838 -323 371 200 0 0 chr4_random 8976051 8976121 -9875692 + L1P LINE L1 5150 5219 -927 * 2009 127 13 3 chr4_random 8976123 8976438 -9875375 + L1PA14 LINE L1 5839 6156 -5 217 167 24 0 chr4_random 8976458 8976500 -9875313 + GA-rich Low_complexity Low_complexity 1 43 0 1361 201 49 0 chr4_random 8976937 8977225 -9874588 - AluJb SINE Alu -10 302 1 25 31 0 0 chr4_random 8977233 8977265 -9874548 + AT_rich Low_complexity Low_complexity 1 32 0 25 75 0 0 chr4_random 8981273 8981326 -9870487 + AT_rich Low_complexity Low_complexity 1 53 0 180 152 0 0 chr4_random 8981800 8981833 -9869980 + (TTA)n Simple_repeat Simple_repeat 3 35 0 2153 115 0 0 chr4_random 8982302 8982590 -9869223 + AluSx SINE Alu 1 288 -24 212 59 29 0 chr4_random 8982590 8982624 -9869189 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr4_random 8983636 8983657 -9868156 + AT_rich Low_complexity Low_complexity 1 21 0 396 164 19 29 chr4_random 8983708 8983812 -9868001 - L1MB2 LINE L1 0 6171 6069 21 0 0 0 chr4_random 8983972 8983993 -9867820 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr4_random 8985083 8985118 -9866695 + AT_rich Low_complexity Low_complexity 1 35 0 8440 120 18 16 chr4_random 8987367 8988409 -9863404 - HSMAR1 DNA Mariner 0 1287 241 2295 98 3 9 chr4_random 8988409 8988724 -9863089 - AluSq SINE Alu 0 313 1 8440 120 18 16 chr4_random 8988724 8988964 -9862849 - HSMAR1 DNA Mariner -1046 241 3 21 0 0 0 chr4_random 8989071 8989092 -9862721 + AT_rich Low_complexity Low_complexity 1 21 0 391 266 117 5 chr4_random 8989136 8989324 -9862489 - Charlie4 DNA MER1_type -6 1955 1747 402 283 73 11 chr4_random 8989384 8989561 -9862252 - Charlie4 DNA MER1_type -1744 217 30 230 348 33 22 chr4_random 8991352 8991444 -9860369 - LTR16A LTR ERVL -267 183 91 1744 311 67 50 chr4_random 8991605 8992996 -9858817 - HERV16 LTR ERVL -3122 1874 338 307 370 120 5 chr4_random 8993260 8993460 -9858353 - LTR16A LTR ERVL -3 447 225 276 324 92 14 chr4_random 8993506 8993648 -9858165 - LTR16A LTR ERVL -289 161 9 26 30 0 0 chr4_random 8994717 8994750 -9857063 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr4_random 8995344 8995372 -9856441 + AT_rich Low_complexity Low_complexity 1 28 0 5556 137 36 11 chr4_random 8996816 8997016 -9854797 + L1MA5A LINE L1 5291 5485 -812 1154 148 71 125 chr4_random 8997016 8997327 -9854486 + AluJo SINE Alu 4 297 -5 5556 137 36 11 chr4_random 8997327 8998109 -9853704 + L1MA5A LINE L1 5485 6297 0 26 74 0 0 chr4_random 8998406 8998460 -9853353 + AT_rich Low_complexity Low_complexity 1 54 0 229 197 0 33 chr4_random 8998468 8998529 -9853284 + L1MC4 LINE L1 6645 6703 -1339 * 237 204 0 0 chr4_random 8998501 8998555 -9853258 - L1MC4 LINE L1 -1339 6703 6650 27 0 0 0 chr4_random 8998757 8998784 -9853029 + AT_rich Low_complexity Low_complexity 1 27 0 252 237 0 0 chr4_random 8998894 8998953 -9852860 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 309 270 11 11 chr4_random 8999212 8999301 -9852512 + LTR33A LTR ERVL 433 521 -2 29 47 0 0 chr4_random 9000012 9000055 -9851758 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr4_random 9001893 9001915 -9849898 + AT_rich Low_complexity Low_complexity 1 22 0 1021 91 0 0 chr4_random 9002286 9002418 -9849395 + AluSp SINE Alu 1 132 -181 2223 108 3 0 chr4_random 9002420 9002725 -9849088 + AluSp SINE Alu 1 306 -7 28 29 0 0 chr4_random 9002986 9003021 -9848792 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr4_random 9003183 9003213 -9848600 + AT_rich Low_complexity Low_complexity 1 30 0 1731 215 2 73 chr4_random 9003717 9004168 -9847645 - MER52A LTR ERV1 0 1755 1337 252 137 0 0 chr4_random 9004217 9004268 -9847545 + (TTAG)n Simple_repeat Simple_repeat 2 52 0 260 359 23 15 chr4_random 9004280 9004411 -9847402 + L2 LINE L2 3180 3311 -2 1002 191 28 96 chr4_random 9004657 9005166 -9846647 - MER52A LTR ERV1 -395 1232 437 250 343 0 0 chr4_random 9005458 9005531 -9846282 + MIR3 SINE MIR 82 154 -54 23 0 0 0 chr4_random 9005644 9005667 -9846146 + AT_rich Low_complexity Low_complexity 1 23 0 1611 201 31 3 chr4_random 9005667 9005991 -9845822 - MER50 LTR ERV1 -401 333 1 23 33 0 0 chr4_random 9006016 9006046 -9845767 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr4_random 9006386 9006408 -9845405 + AT_rich Low_complexity Low_complexity 1 22 0 2193 109 7 0 chr4_random 9006417 9006710 -9845103 + AluSc SINE Alu 1 295 -14 29 47 0 0 chr4_random 9006719 9006762 -9845051 + AT_rich Low_complexity Low_complexity 1 43 0 2116 215 37 124 chr4_random 9006762 9007673 -9844140 + MER4D LTR ERV1 1 832 -40 22 0 0 0 chr4_random 9007707 9007729 -9844084 + AT_rich Low_complexity Low_complexity 1 22 0 243 233 62 108 chr4_random 9007737 9007866 -9843947 - L1ME3A LINE L1 -105 6065 5943 231 226 0 0 chr4_random 9008329 9008382 -9843431 - L1M4 LINE L1 -3138 3008 2956 1549 125 14 30 chr4_random 9008390 9008882 -9842931 + MER41A LTR ERV1 1 554 0 3468 177 9 26 chr4_random 9008882 9008926 -9842887 + MER41A-int LTR ERV1 1 44 -5902 1900 163 53 28 chr4_random 9008926 9009281 -9842532 + THE1B LTR MaLR 1 364 0 10659 123 5 0 chr4_random 9009281 9010853 -9840960 + THE1B-int LTR MaLR 1 1580 0 1970 157 33 30 chr4_random 9010853 9011216 -9840597 + THE1B LTR MaLR 1 364 0 3468 177 9 26 chr4_random 9011216 9011820 -9839993 + MER41A-int LTR ERV1 41 640 -5306 3246 158 131 19 chr4_random 9011806 9012433 -9839380 + MER41A-int LTR ERV1 1703 2399 -5138 * 394 136 0 4 chr4_random 9012408 9012518 -9839295 + MER41B-int LTR ERV1 1866 2014 -3932 * 3130 145 69 20 chr4_random 9012513 9013233 -9838580 + MER41B-int LTR ERV1 2163 3100 -3163 * 11221 126 45 7 chr4_random 9013224 9015411 -9836402 + MER41B-int LTR ERV1 2860 5944 -2 497 93 27 0 chr4_random 9015411 9015486 -9836327 + MER41B LTR ERV1 1 77 -558 1770 143 0 0 chr4_random 9015880 9016181 -9835632 + AluSg SINE Alu 24 324 0 369 0 0 0 chr4_random 9017756 9017797 -9834016 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 51 0 0 chr4_random 9019278 9019317 -9832496 + AT_rich Low_complexity Low_complexity 1 39 0 4501 196 40 44 chr4_random 9019348 9019497 -9832316 + L1M4c LINE L1 1339 1487 -4895 2337 58 0 7 chr4_random 9019497 9019788 -9832025 + AluY SINE Alu 1 289 -22 4501 196 40 44 chr4_random 9019788 9020865 -9830948 + L1M4c LINE L1 1487 2562 -3820 199 255 43 0 chr4_random 9021731 9021778 -9830035 + MIR3 SINE MIR 115 163 -45 27 0 0 0 chr4_random 9021917 9021944 -9829869 + AT_rich Low_complexity Low_complexity 1 27 0 2082 61 4 22 chr4_random 9023901 9024179 -9827634 - AluY SINE Alu -15 296 24 25 0 0 0 chr4_random 9024522 9024547 -9827266 + AT_rich Low_complexity Low_complexity 1 25 0 702 258 57 34 chr4_random 9025489 9025698 -9826115 + MER58A DNA MER1_type 10 223 -1 241 385 15 15 chr4_random 9026025 9026155 -9825658 - MLT2E LTR ERVL -163 465 336 725 299 82 53 chr4_random 9026415 9026824 -9824989 - MLT1G LTR MaLR -62 533 103 2592 158 23 64 chr4_random 9026824 9027342 -9824471 - LOR1a LTR ERV1 0 497 1 725 299 82 53 chr4_random 9027342 9027414 -9824399 - MLT1G LTR MaLR -492 103 35 25 0 0 0 chr4_random 9027929 9027954 -9823859 + AT_rich Low_complexity Low_complexity 1 25 0 1038 333 143 24 chr4_random 9027989 9028130 -9823683 - L2 LINE L2 -2 3311 3188 203 79 26 0 chr4_random 9028130 9028168 -9823645 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 1038 333 143 24 chr4_random 9028168 9028842 -9822971 - L2 LINE L2 -125 3188 2400 26 0 0 0 chr4_random 9029461 9029487 -9822326 + AT_rich Low_complexity Low_complexity 1 26 0 2376 189 37 23 chr4_random 9029836 9030406 -9821407 + L1 LINE L1 3968 4545 -1601 696 122 32 24 chr4_random 9030406 9030529 -9821284 - Tigger1 DNA MER2_type -1691 727 604 * 1996 199 11 0 chr4_random 9030521 9030883 -9820930 + Tigger1 DNA MER2_type 242 607 -1811 1171 169 58 25 chr4_random 9030899 9031142 -9820671 - Tigger1 DNA MER2_type -2166 252 2 521 291 72 35 chr4_random 9031203 9031522 -9820291 - L1ME3 LINE L1 -40 6122 5792 185 0 0 39 chr4_random 9033148 9033174 -9818639 + (TTAAA)n Simple_repeat Simple_repeat 3 27 0 1797 146 0 14 chr4_random 9034778 9035066 -9816747 + AluSx SINE Alu 1 284 -28 262 276 94 0 chr4_random 9035076 9035203 -9816610 + L1M4 LINE L1 2741 2879 -3267 7276 50 0 0 chr4_random 9035210 9036879 -9814934 - L1PA5 LINE L1 -4 6150 4477 16660 42 0 1 chr4_random 9036879 9039303 -9812510 + L1PA5 LINE L1 1946 4486 -1660 595 246 137 19 chr4_random 9039293 9039614 -9812199 + L1M4 LINE L1 2861 3219 -2927 * 313 336 59 29 chr4_random 9039738 9039976 -9811837 - L1M4 LINE L1 -2527 3619 3375 28 29 0 0 chr4_random 9040091 9040126 -9811687 + AT_rich Low_complexity Low_complexity 1 35 0 811 291 124 23 chr4_random 9040274 9041280 -9810533 - L1M4 LINE L1 -2880 3266 2159 1100 199 38 38 chr4_random 9041314 9041606 -9810207 - AluJo SINE Alu 0 312 21 703 287 69 21 chr4_random 9041619 9041963 -9809850 - MSTD LTR MaLR -1 364 10 255 176 0 39 chr4_random 9041955 9042006 -9809807 - MSTD LTR MaLR -345 51 3 * 30 48 0 16 chr4_random 9042192 9042206 -9809607 + AT_rich Low_complexity Low_complexity 1 14 -47 2678 14 0 0 chr4_random 9042206 9042502 -9809311 - AluY SINE Alu -15 296 1 30 48 0 16 chr4_random 9042502 9042549 -9809264 + AT_rich Low_complexity Low_complexity 14 61 0 193 320 0 0 chr4_random 9042564 9042614 -9809199 - MER5A DNA MER1_type -3 186 137 1269 176 9 9 chr4_random 9043071 9043292 -9808521 + MER50 LTR ERV1 1 221 -513 1276 195 4 43 chr4_random 9043293 9043570 -9808243 + MER50 LTR ERV1 432 697 -37 668 248 44 8 chr4_random 9044165 9044367 -9807446 + MER61D LTR ERV1 338 483 -18 6457 266 51 39 chr4_random 9044399 9047212 -9804601 + MER61D-int LTR ERV1 28 2776 -4220 5663 147 16 8 chr4_random 9047205 9048109 -9803704 + MER52-int LTR ERV1 4315 5225 -1866 * 266 265 52 52 chr4_random 9049231 9049367 -9802446 + MER52-int LTR ERV1 4274 4409 -545 722 253 70 28 chr4_random 9049479 9049771 -9802042 + MER52-int LTR ERV1 6839 7090 -1 674 234 29 4 chr4_random 9050241 9050401 -9801412 + MER61D LTR ERV1 338 544 -18 27 49 0 0 chr4_random 9051504 9051545 -9800268 + AT_rich Low_complexity Low_complexity 1 41 0 3112 181 69 59 chr4_random 9051571 9051856 -9799957 - MER44D DNA MER2_type -1882 705 424 1515 190 46 30 chr4_random 9051856 9052225 -9799588 + THE1C LTR MaLR 1 375 0 3112 181 69 59 chr4_random 9052225 9052636 -9799177 - MER44D DNA MER2_type -2163 424 2 2006 128 7 7 chr4_random 9052714 9053019 -9798794 + AluSp SINE Alu 4 308 -5 249 276 49 81 chr4_random 9054031 9054154 -9797659 + L2 LINE L2 3190 3308 -5 23 68 0 0 chr4_random 9054359 9054403 -9797410 + AT_rich Low_complexity Low_complexity 1 44 0 399 332 92 13 chr4_random 9055152 9055390 -9796423 + MIR SINE MIR 6 262 0 180 0 0 0 chr4_random 9055641 9055661 -9796152 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1434 83 0 0 chr4_random 9055661 9055853 -9795960 - L1PA5 LINE L1 -12 6142 5951 222 37 0 0 chr4_random 9056462 9056489 -9795324 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 274 200 67 33 chr4_random 9056763 9056853 -9794960 + MLT1I LTR MaLR 112 204 -205 24 67 0 0 chr4_random 9057576 9057621 -9794192 + AT_rich Low_complexity Low_complexity 1 45 0 328 328 60 8 chr4_random 9058499 9058633 -9793180 - L2 LINE L2 -2811 503 363 228 67 0 0 chr4_random 9060477 9060507 -9791306 + (TG)n Simple_repeat Simple_repeat 1 30 0 590 152 45 0 chr4_random 9060573 9060685 -9791128 + L1MA4 LINE L1 6176 6292 -8 23 0 0 0 chr4_random 9061203 9061226 -9790587 + AT_rich Low_complexity Low_complexity 1 23 0 315 339 97 30 chr4_random 9061246 9061585 -9790228 + L2 LINE L2 2344 2705 -609 1883 209 7 32 chr4_random 9061597 9061725 -9790088 - L1MC3 LINE L1 -17 7768 7638 1592 210 3 0 chr4_random 9061725 9062035 -9789778 - AluJb SINE Alu 0 312 2 1883 209 7 32 chr4_random 9062035 9062370 -9789443 - L1MC3 LINE L1 -147 7638 7317 318 214 0 92 chr4_random 9062372 9062470 -9789343 + LTR38B LTR ERV1 3 91 -519 2725 16 0 6 chr4_random 9062470 9062783 -9789030 + AluYb8 SINE Alu 1 311 -7 256 240 23 101 chr4_random 9062810 9062939 -9788874 + LTR38B LTR ERV1 38 156 -454 235 284 0 15 chr4_random 9062987 9063054 -9788759 + LTR38 LTR ERV1 129 194 -362 286 218 34 75 chr4_random 9063335 9063471 -9788342 + LTR38B LTR ERV1 483 611 0 380 213 119 31 chr4_random 9063483 9063643 -9788170 - L1MDa LINE L1 -4064 2476 2303 * 876 224 67 73 chr4_random 9063638 9063849 -9787964 + L1MDa LINE L1 2476 2687 -3853 1942 149 0 0 chr4_random 9063849 9064154 -9787659 + AluSx SINE Alu 3 307 0 876 224 67 73 chr4_random 9064154 9064459 -9787354 + L1MDa LINE L1 2687 2987 -3553 916 303 50 18 chr4_random 9064528 9065251 -9786562 + L1MDa LINE L1 3154 3899 -2641 189 0 0 0 chr4_random 9066371 9066392 -9785421 + (GGAAA)n Simple_repeat Simple_repeat 5 25 0 1575 115 0 13 chr4_random 9067327 9067562 -9784251 - AluSc SINE Alu -10 299 68 246 160 0 0 chr4_random 9069304 9069354 -9782459 + (TG)n Simple_repeat Simple_repeat 2 51 0 27 0 0 0 chr4_random 9069880 9069907 -9781906 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr4_random 9070192 9070212 -9781601 + (TAA)n Simple_repeat Simple_repeat 2 21 0 186 150 0 0 chr4_random 9070733 9070773 -9781040 + (CATA)n Simple_repeat Simple_repeat 1 40 0 2131 180 41 17 chr4_random 9071020 9071436 -9780377 - MSTB LTR MaLR 0 426 1 1751 159 143 11 chr4_random 9071576 9071954 -9779859 - MSTA LTR MaLR 0 428 1 1769 118 80 0 chr4_random 9071958 9072249 -9779564 - AluSg SINE Alu 0 312 1 237 196 0 0 chr4_random 9072367 9072423 -9779390 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 1993 129 102 20 chr4_random 9073921 9074315 -9777498 + MSTA LTR MaLR 1 426 -2 8293 154 30 48 chr4_random 9074323 9075918 -9775895 + MSTA-int LTR MaLR 6 1575 -5 1416 170 110 36 chr4_random 9075923 9076259 -9775554 + MSTA LTR MaLR 1 361 -67 302 167 14 0 chr4_random 9076259 9076271 -9775542 + (TA)n Simple_repeat Simple_repeat 1 11 -62 189 0 0 0 chr4_random 9076271 9076292 -9775521 + (TG)n Simple_repeat Simple_repeat 2 22 0 302 167 14 0 chr4_random 9076292 9076351 -9775462 + (TA)n Simple_repeat Simple_repeat 11 73 0 236 228 35 0 chr4_random 9076355 9076412 -9775401 - L1MCa LINE L1 -4362 2064 2006 * 286 196 0 82 chr4_random 9076396 9076493 -9775320 + L1MC4 LINE L1 6615 6703 -1339 349 115 0 0 chr4_random 9076509 9076561 -9775252 + MSTA LTR MaLR 377 428 0 264 316 71 24 chr4_random 9076712 9076880 -9774933 + Charlie7 DNA MER1_type 269 444 -2168 22 35 0 0 chr4_random 9076926 9076955 -9774858 + AT_rich Low_complexity Low_complexity 1 29 0 226 169 31 0 chr4_random 9077224 9077289 -9774524 + (TA)n Simple_repeat Simple_repeat 2 68 0 26 64 0 0 chr4_random 9078099 9078146 -9773667 + AT_rich Low_complexity Low_complexity 1 47 0 334 143 0 18 chr4_random 9078932 9078988 -9772825 - MER5B DNA MER1_type -1 177 123 283 293 128 16 chr4_random 9079296 9079484 -9772329 + L1MC/D LINE L1 5354 5562 -2246 354 313 0 36 chr4_random 9079993 9080105 -9771708 + MIR SINE MIR 3 110 -152 23 0 0 0 chr4_random 9080780 9080803 -9771010 + AT_rich Low_complexity Low_complexity 1 23 0 656 350 40 29 chr4_random 9081458 9081878 -9769935 - L2 LINE L2 -15 3298 2874 196 326 12 23 chr4_random 9082453 9082539 -9769274 + MIR3 SINE MIR 9 93 -115 2015 124 4 0 chr4_random 9083018 9083292 -9768521 + AluSx SINE Alu 6 280 -32 291 28 0 0 chr4_random 9083292 9083328 -9768485 + (TAA)n Simple_repeat Simple_repeat 1 36 0 4622 69 2 26 chr4_random 9083656 9084716 -9767097 + MER11A LTR ERVK 1 1266 0 4665 122 18 4 chr4_random 9084716 9085395 -9766418 + HERVK11 LTR ERVK 1 688 -7265 31732 77 5 2 chr4_random 9085399 9089491 -9762322 + HERVK11 LTR ERVK 3850 7953 0 1278 60 6 16 chr4_random 9089491 9089722 -9762091 + MER11A LTR ERVK 1 326 -940 11338 115 28 0 chr4_random 9089728 9092288 -9759525 + L1PA8 LINE L1 3554 6172 0 3689 231 32 12 chr4_random 9092292 9093260 -9758553 + Cheshire DNA MER1_type 641 1627 -793 1269 204 118 34 chr4_random 9093330 9093747 -9758066 + Cheshire DNA MER1_type 1951 2402 -18 35 54 0 0 chr4_random 9093826 9093882 -9757931 + AT_rich Low_complexity Low_complexity 1 56 0 2703 172 52 35 chr4_random 9094033 9094568 -9757245 - MER7C DNA MER2_type 0 602 59 1882 122 57 4 chr4_random 9094748 9095027 -9756786 - AluSx SINE Alu -18 294 1 203 212 0 15 chr4_random 9095056 9095122 -9756691 + CT-rich Low_complexity Low_complexity 1 65 0 234 150 0 0 chr4_random 9095305 9095345 -9756468 + (CA)n Simple_repeat Simple_repeat 1 40 0 2072 73 0 11 chr4_random 9095576 9095850 -9755963 - AluSc SINE Alu -38 271 1 1449 139 25 11 chr4_random 9096698 9096972 -9754841 - L1MA2 LINE L1 -10 6294 6017 2284 90 0 3 chr4_random 9097303 9097603 -9754210 + AluSq SINE Alu 5 303 -10 24 0 0 0 chr4_random 9097921 9097945 -9753868 + AT_rich Low_complexity Low_complexity 1 24 0 261 198 12 37 chr4_random 9098009 9098090 -9753723 + (TA)n Simple_repeat Simple_repeat 1 79 0 1743 136 0 80 chr4_random 9098546 9098870 -9752943 - AluSx SINE Alu -14 298 1 27 0 0 0 chr4_random 9099342 9099369 -9752444 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr4_random 9099430 9099458 -9752355 + AT_rich Low_complexity Low_complexity 1 28 0 3406 168 8 22 chr4_random 9100505 9101126 -9750687 + LTR9 LTR ERV1 1 612 0 1247 288 126 22 chr4_random 9101280 9101739 -9750074 + MLT1G LTR MaLR 8 514 -76 22 106 0 0 chr4_random 9102268 9102353 -9749460 + AT_rich Low_complexity Low_complexity 1 85 0 25 0 0 0 chr4_random 9103230 9103255 -9748558 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr4_random 9103376 9103405 -9748408 + AT_rich Low_complexity Low_complexity 1 29 0 443 102 0 0 chr4_random 9103525 9103638 -9748175 + L1PA10 LINE L1 6087 6199 0 892 236 49 21 chr4_random 9103638 9104008 -9747805 - L1MEc LINE L1 -3756 2463 2125 523 269 59 51 chr4_random 9104375 9104631 -9747182 + Charlie2 DNA MER1_type 30 287 -2495 716 279 53 45 chr4_random 9104657 9104933 -9746880 + Charlie2 DNA MER1_type 1855 2138 -724 2012 145 0 19 chr4_random 9104933 9105250 -9746563 + AluSx SINE Alu 1 311 -1 716 279 53 45 chr4_random 9105250 9105504 -9746309 + Charlie2 DNA MER1_type 2138 2389 -473 1674 203 5 46 chr4_random 9105516 9105886 -9745927 - MLT1A1 LTR MaLR -8 357 3 246 246 60 30 chr4_random 9106008 9106142 -9745671 + Charlie2 DNA MER1_type 2588 2725 -137 23 0 0 0 chr4_random 9106142 9106165 -9745648 + AT_rich Low_complexity Low_complexity 1 23 0 434 354 0 0 chr4_random 9106372 9106499 -9745314 + MER5B DNA MER1_type 2 128 -50 21 36 0 0 chr4_random 9107246 9107274 -9744539 + AT_rich Low_complexity Low_complexity 1 28 0 42 86 0 0 chr4_random 9107901 9108006 -9743807 + AT_rich Low_complexity Low_complexity 1 105 0 189 121 0 0 chr4_random 9108079 9108112 -9743701 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 25 51 0 0 chr4_random 9108139 9108178 -9743635 + AT_rich Low_complexity Low_complexity 1 39 0 203 292 7 49 chr4_random 9108244 9108388 -9743425 + (CATATA)n Simple_repeat Simple_repeat 6 143 0 9465 216 48 54 chr4_random 9108605 9111225 -9740588 + L1PA13 LINE L1 1 2618 -4179 9883 188 54 19 chr4_random 9111229 9113417 -9738396 + L1PA13 LINE L1 3895 6132 -682 1949 102 6 81 chr4_random 9113417 9113750 -9738063 + AluSx SINE Alu 1 308 -4 9883 188 54 19 chr4_random 9113750 9114450 -9737363 + L1PA13 LINE L1 6132 6806 -8 223 171 0 0 chr4_random 9115357 9115398 -9736415 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 23 33 0 0 chr4_random 9115448 9115478 -9736335 + AT_rich Low_complexity Low_complexity 1 30 0 240 351 106 34 chr4_random 9116340 9116548 -9735265 - MIR SINE MIR -17 245 23 25 51 0 0 chr4_random 9117709 9117748 -9734065 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr4_random 9118565 9118587 -9733226 + AT_rich Low_complexity Low_complexity 1 22 0 1162 217 33 13 chr4_random 9119445 9119850 -9731963 - LTR54 LTR ERV1 -4 506 8 407 189 11 0 chr4_random 9120446 9120536 -9731277 + L1 LINE L1 4247 4337 -1809 23 0 0 0 chr4_random 9122034 9122057 -9729756 + AT_rich Low_complexity Low_complexity 1 23 0 1972 97 75 0 chr4_random 9126567 9126846 -9724967 - AluSg SINE Alu -10 300 1 1528 182 55 39 chr4_random 9127956 9128340 -9723473 + MLT1B LTR MaLR 1 390 0 1180 142 0 0 chr4_random 9130806 9130975 -9720838 + AluSp SINE Alu 130 298 -15 34 24 0 0 chr4_random 9131010 9131051 -9720762 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr4_random 9131380 9131410 -9720403 + AT_rich Low_complexity Low_complexity 1 30 0 24 77 0 0 chr4_random 9132001 9132053 -9719760 + AT_rich Low_complexity Low_complexity 1 52 0 2126 106 6 13 chr4_random 9132832 9133144 -9718669 - AluSq SINE Alu -3 310 1 23 0 9 0 chr4_random 9134263 9134326 -9717487 + AT_rich Low_complexity Low_complexity 1 23 0 261 282 47 0 chr4_random 9134394 9134479 -9717334 - MIR SINE MIR -171 91 3 608 322 101 35 chr4_random 9134648 9135074 -9716739 - LTR16A LTR ERVL 0 457 4 342 36 54 0 chr4_random 9135926 9135982 -9715831 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 721 252 175 110 chr4_random 9136012 9136504 -9715309 + MLT1E LTR MaLR 1 524 -130 261 286 157 27 chr4_random 9136564 9136711 -9715102 + MER88 LTR ERVL 79 244 -220 * 1067 282 86 25 chr4_random 9136581 9137014 -9714799 - MER74B LTR ERVL -75 547 89 433 258 30 23 chr4_random 9137049 9137181 -9714632 + MLT1E LTR MaLR 520 652 -2 22 35 0 0 chr4_random 9137206 9137235 -9714578 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr4_random 9138281 9138305 -9713508 + AT_rich Low_complexity Low_complexity 1 24 0 1966 112 14 3 chr4_random 9138589 9138883 -9712930 - AluY SINE Alu -14 297 1 2528 186 39 2 chr4_random 9139000 9139463 -9712350 - MER31A LTR ERV1 -5 480 1 354 61 0 0 chr4_random 9139504 9139553 -9712260 + (CA)n Simple_repeat Simple_repeat 2 50 0 238 276 0 0 chr4_random 9139571 9139629 -9712184 + L1MB7 LINE L1 781 838 -5704 1928 280 55 38 chr4_random 9139645 9140543 -9711270 + L1MB7 LINE L1 994 1915 -4731 279 0 0 0 chr4_random 9140543 9140574 -9711239 + (CA)n Simple_repeat Simple_repeat 2 32 0 1928 280 55 38 chr4_random 9140574 9140774 -9711039 + L1MB7 LINE L1 1915 2110 -4536 1906 257 132 41 chr4_random 9141261 9141977 -9709836 + L1MB7 LINE L1 2294 2943 -3701 2259 128 11 3 chr4_random 9141977 9142329 -9709484 - THE1A LTR MaLR 0 355 1 1906 257 132 41 chr4_random 9142329 9142404 -9709409 + L1MB7 LINE L1 2943 3010 -3634 2282 168 26 12 chr4_random 9142404 9142828 -9708985 + MSTB1 LTR MaLR 3 432 0 1906 257 132 41 chr4_random 9142828 9143543 -9708270 + L1MB7 LINE L1 3010 3948 -2696 912 288 37 29 chr4_random 9143543 9143921 -9707892 - L1M4 LINE L1 -1327 4819 4439 2479 214 92 62 chr4_random 9143932 9145164 -9706649 + L1MB7 LINE L1 5417 6680 -2 903 168 52 0 chr4_random 9145432 9145605 -9706208 - L1MA9 LINE L1 -31 6281 6100 23 33 0 0 chr4_random 9146200 9146230 -9705583 + AT_rich Low_complexity Low_complexity 1 30 0 2099 131 0 28 chr4_random 9146963 9147284 -9704529 - AluSx SINE Alu 0 312 1 1355 214 57 7 chr4_random 9147825 9148105 -9703708 - MLT1A1 LTR MaLR -71 294 1 22 70 0 0 chr4_random 9149608 9149651 -9702162 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr4_random 9149694 9149715 -9702098 + AT_rich Low_complexity Low_complexity 1 21 0 251 357 61 0 chr4_random 9150326 9150424 -9701389 + L2 LINE L2 3206 3309 -4 2159 99 0 0 chr4_random 9150584 9150909 -9700904 - AluSp SINE Alu 0 325 1 23 0 0 0 chr4_random 9151945 9151968 -9699845 + AT_rich Low_complexity Low_complexity 1 23 0 228 303 22 0 chr4_random 9152711 9152800 -9699013 + CT-rich Low_complexity Low_complexity 4 94 0 1147 220 155 110 chr4_random 9152962 9153588 -9698225 + MLT1E1 LTR MaLR 1 654 0 405 348 123 28 chr4_random 9153728 9154119 -9697694 - LTR16A LTR ERVL -14 436 9 648 345 64 61 chr4_random 9154632 9155521 -9696292 - ERVL LTR ERVL -697 5067 4176 447 35 0 0 chr4_random 9155862 9155919 -9695894 + (TA)n Simple_repeat Simple_repeat 2 58 0 15739 47 2 8 chr4_random 9155920 9157580 -9694233 - L1PA5 LINE L1 -5 6149 4503 2367 100 0 0 chr4_random 9157580 9157889 -9693924 - AluY SINE Alu -2 309 1 15739 47 2 8 chr4_random 9157889 9158992 -9692821 - L1PA5 LINE L1 -1651 4503 3395 1605 44 26 0 chr4_random 9158992 9159218 -9692595 + L1PA5 LINE L1 3168 3399 -2747 2800 324 61 37 chr4_random 9159291 9160895 -9690918 - ERVL LTR ERVL -2334 3430 1789 1725 142 134 28 chr4_random 9160895 9161282 -9690531 - MSTA LTR MaLR 0 428 1 3073 151 12 48 chr4_random 9161304 9161882 -9689931 - THE1-int LTR MaLR -989 591 35 537 216 194 0 chr4_random 9161884 9162023 -9689790 - MSTA LTR MaLR -262 166 1 860 267 32 14 chr4_random 9162191 9162536 -9689277 - L1M4 LINE L1 -1947 4199 3849 373 316 211 6 chr4_random 9162569 9162740 -9689073 - MIR SINE MIR -3 259 54 228 149 0 0 chr4_random 9163829 9163876 -9687937 + (CA)n Simple_repeat Simple_repeat 1 47 0 710 290 27 0 chr4_random 9163892 9164075 -9687738 - MER5A DNA MER1_type -1 188 1 447 268 209 0 chr4_random 9164128 9164281 -9687532 + MER63A DNA MER1_type 26 210 0 315 0 0 0 chr4_random 9164717 9164752 -9687061 + (CA)n Simple_repeat Simple_repeat 2 36 0 213 39 0 0 chr4_random 9165162 9165188 -9686625 + (TA)n Simple_repeat Simple_repeat 2 27 0 446 279 10 0 chr4_random 9165188 9165292 -9686521 - MER5A DNA MER1_type -84 105 1 259 59 0 73 chr4_random 9165350 9165418 -9686395 + (TA)n Simple_repeat Simple_repeat 1 63 0 26 30 0 0 chr4_random 9165603 9165636 -9686177 + AT_rich Low_complexity Low_complexity 1 33 0 401 313 72 84 chr4_random 9166187 9166685 -9685128 + L2 LINE L2 1442 1933 -1381 291 238 71 0 chr4_random 9167040 9167124 -9684689 - MER20 DNA MER1_type 0 219 130 417 169 156 0 chr4_random 9167271 9167348 -9684465 - FRAM SINE Alu -26 150 62 1192 217 12 65 chr4_random 9167535 9167858 -9683955 - AluJo SINE Alu -1 311 6 209 270 32 0 chr4_random 9167916 9167979 -9683834 + L2 LINE L2 2661 2725 -589 207 420 10 10 chr4_random 9168467 9168567 -9683246 + L2 LINE L2 3168 3267 -5 939 271 47 82 chr4_random 9168961 9169474 -9682339 - MER34 LTR ERV1 -47 495 1 21 71 0 0 chr4_random 9170198 9170240 -9681573 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr4_random 9170325 9170346 -9681467 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4_random 9170755 9170779 -9681034 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr4_random 9171144 9171180 -9680633 + AT_rich Low_complexity Low_complexity 1 36 0 451 299 11 16 chr4_random 9171325 9171509 -9680304 - L1MC5 LINE L1 -61 7900 7718 296 244 37 24 chr4_random 9171586 9171668 -9680145 - L1MC4 LINE L1 -1153 6889 6807 304 333 23 38 chr4_random 9171827 9171959 -9679854 - L2 LINE L2 0 3313 3184 35 24 0 0 chr4_random 9172473 9172515 -9679298 + AT_rich Low_complexity Low_complexity 1 42 0 10474 232 56 50 chr4_random 9172515 9173817 -9677996 + L1PA16 LINE L1 2293 3586 -4018 1875 139 10 7 chr4_random 9173817 9174105 -9677708 + AluSc SINE Alu 20 308 -1 10474 232 56 50 chr4_random 9174105 9174755 -9677058 + L1PA16 LINE L1 3586 4231 -3373 693 108 0 0 chr4_random 9174755 9174857 -9676956 - AluY SINE Alu -22 289 188 10474 232 56 50 chr4_random 9174857 9178092 -9673721 + L1PA16 LINE L1 4231 7598 -6 30 45 0 0 chr4_random 9178099 9178143 -9673670 + AT_rich Low_complexity Low_complexity 1 44 0 2194 84 7 24 chr4_random 9178419 9178715 -9673098 + AluSg SINE Alu 1 291 -19 2233 95 0 3 chr4_random 9179114 9179408 -9672405 + AluY SINE Alu 1 293 -18 819 31 0 0 chr4_random 9179414 9179512 -9672301 + (TATATG)n Simple_repeat Simple_repeat 5 102 0 2315 95 0 0 chr4_random 9179512 9179808 -9672005 + AluSg1 SINE Alu 1 296 -13 21 0 0 0 chr4_random 9180537 9180558 -9671255 + AT_rich Low_complexity Low_complexity 1 21 0 241 319 65 57 chr4_random 9180647 9180876 -9670937 - MLT1H LTR MaLR -222 327 97 230 200 0 50 chr4_random 9181332 9181392 -9670421 - L1MC4 LINE L1 -1331 6711 6655 1435 190 93 4 chr4_random 9182208 9182487 -9669326 + MER65C LTR ERV1 1 304 -157 582 191 8 53 chr4_random 9182490 9182621 -9669192 - MER2 DNA MER2_type -220 125 1 191 241 0 13 chr4_random 9182623 9182702 -9669111 + (TATATG)n Simple_repeat Simple_repeat 5 82 0 22 56 0 0 chr4_random 9182782 9182818 -9668995 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr4_random 9183376 9183411 -9668402 + AT_rich Low_complexity Low_complexity 1 35 0 1549 187 17 37 chr4_random 9183419 9183873 -9667940 - L1M3 LINE L1 -559 5609 5153 251 225 88 0 chr4_random 9183921 9184001 -9667812 - L1MC4 LINE L1 -1342 6700 6614 239 200 0 95 chr4_random 9183924 9184019 -9667794 + L1MC4 LINE L1 6614 6699 -1343 * 1497 246 0 9 chr4_random 9184026 9184363 -9667450 - MLT1A1 LTR MaLR -31 334 1 3699 225 39 20 chr4_random 9184363 9184845 -9666968 - L1M3 LINE L1 -986 5160 4689 2938 127 25 0 chr4_random 9184845 9185287 -9666526 - MLT2A2 LTR ERVL 0 453 1 3699 225 39 20 chr4_random 9185287 9185876 -9665937 - L1M3 LINE L1 -1457 4689 4068 648 256 119 80 chr4_random 9185911 9186297 -9665516 - MLT1C LTR MaLR -61 406 6 1586 177 0 25 chr4_random 9186386 9186702 -9665111 - L1PA13 LINE L1 -11 6152 5845 315 0 0 0 chr4_random 9187201 9187236 -9664577 + (TG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr4_random 9187654 9187676 -9664137 + AT_rich Low_complexity Low_complexity 1 22 0 8402 110 29 0 chr4_random 9188058 9190116 -9661697 + L1PA7 LINE L1 4080 6151 -3 4868 141 14 0 chr4_random 9190536 9191514 -9660299 - L1PA14 LINE L1 -13 6148 5183 1741 161 14 0 chr4_random 9191515 9191806 -9660007 + L1P LINE L1 4038 4332 -1814 1487 161 54 7 chr4_random 9192555 9192907 -9658906 - LTR62 LTR ERVK -44 675 261 2166 106 3 0 chr4_random 9193061 9193354 -9658459 - AluSc SINE Alu -13 296 3 234 0 0 0 chr4_random 9193360 9193386 -9658427 + (T)n Simple_repeat Simple_repeat 1 26 0 5740 135 1 1 chr4_random 9193392 9194273 -9657540 - L1PA11 LINE L1 -1 6173 5293 9026 73 14 102 chr4_random 9194393 9195854 -9655959 - SVA Other Other -3 1383 52 606 63 0 0 chr4_random 9195855 9195934 -9655879 + (AGGGGG)n Simple_repeat Simple_repeat 2 80 0 4330 168 6 5 chr4_random 9195937 9196746 -9655067 - L1PA11 LINE L1 -845 5301 4492 488 169 12 0 chr4_random 9196744 9196827 -9654986 - L1PA11 LINE L1 -2538 3608 3525 * 654 195 24 16 chr4_random 9198524 9198647 -9653166 + FLAM_A SINE Alu 1 124 -9 54 56 0 0 chr4_random 9198762 9198851 -9652962 + AT_rich Low_complexity Low_complexity 1 89 0 2137 125 3 0 chr4_random 9198851 9199154 -9652659 + AluSq SINE Alu 1 304 -9 3277 243 48 21 chr4_random 9199174 9201079 -9650734 - L1MC2 LINE L1 -68 6276 4276 16745 201 50 13 chr4_random 9201380 9205192 -9646621 + L1M1 LINE L1 10 3963 -3602 1626 173 38 11 chr4_random 9205202 9205549 -9646264 + L1MA2 LINE L1 5949 6304 0 2864 205 29 13 chr4_random 9205614 9206762 -9645051 - L1P4 LINE L1 -389 5834 4672 2120 283 45 15 chr4_random 9206768 9207692 -9644121 - L1MC2 LINE L1 -2787 3359 2403 3990 117 94 62 chr4_random 9207692 9208447 -9643366 + LTR19C LTR ERV1 1 779 0 2120 283 45 15 chr4_random 9208447 9208501 -9643312 - L1MC2 LINE L1 -3743 2403 2352 * 4634 227 119 7 chr4_random 9208498 9209727 -9642086 - L1P4 LINE L1 -4278 1925 466 1550 282 29 21 chr4_random 9209808 9210563 -9641250 - L1M4 LINE L1 -3122 3024 2264 1628 211 51 14 chr4_random 9210685 9211036 -9640777 + MLT2D LTR ERVL 3 366 -48 225 0 0 0 chr4_random 9211037 9211062 -9640751 + (TC)n Simple_repeat Simple_repeat 2 26 0 34 24 0 0 chr4_random 9211207 9211248 -9640565 + AT_rich Low_complexity Low_complexity 1 41 0 2341 166 24 7 chr4_random 9212165 9212586 -9639227 + MSTA LTR MaLR 1 428 0 7393 41 0 0 chr4_random 9212763 9213963 -9637850 + L1PA4 LINE L1 4953 6152 -3 24 53 0 0 chr4_random 9213963 9214001 -9637812 + AT_rich Low_complexity Low_complexity 1 38 0 443 254 48 32 chr4_random 9214705 9214789 -9637024 + MER70B LTR ERVL 5 90 -488 3256 176 65 36 chr4_random 9214789 9215539 -9636274 + LTR1 LTR ERV1 1 772 -13 460 174 0 12 chr4_random 9215554 9215640 -9636173 + MER70B LTR ERVL 80 164 -414 * 1609 246 18 34 chr4_random 9215634 9216020 -9635793 + MER70A LTR ERVL 91 470 -2 5868 195 44 19 chr4_random 9216022 9217184 -9634629 + MER70A-int LTR ERVL 1 1191 -3832 17830 209 9 14 chr4_random 9217184 9218647 -9633166 + MER70A-int LTR ERVL 1621 3090 -1933 1884 182 63 29 chr4_random 9218647 9219059 -9632754 + MSTB LTR MaLR 1 426 0 17830 209 9 14 chr4_random 9219059 9221016 -9630797 + MER70A-int LTR ERVL 3090 5023 0 1906 260 13 8 chr4_random 9221023 9221492 -9630321 + MER70A LTR ERVL 2 472 0 35 41 0 0 chr4_random 9223235 9223284 -9628529 + AT_rich Low_complexity Low_complexity 1 49 0 367 96 0 41 chr4_random 9223517 9223590 -9628223 + L1MA7 LINE L1 6219 6288 -3 2654 148 30 86 chr4_random 9224303 9224870 -9626943 - LTR26 LTR ERV1 -68 535 1 371 233 174 0 chr4_random 9224873 9224959 -9626854 - MER82 DNA MER2_type -515 138 38 214 383 0 0 chr4_random 9225159 9225253 -9626560 - MIR SINE MIR -120 142 49 26 0 0 0 chr4_random 9225349 9225375 -9626438 + AT_rich Low_complexity Low_complexity 1 26 0 278 179 0 15 chr4_random 9226178 9226245 -9625568 + CT-rich Low_complexity Low_complexity 3 68 0 191 222 12 0 chr4_random 9226710 9226791 -9625022 + GA-rich Low_complexity Low_complexity 1 82 0 2163 102 0 3 chr4_random 9227095 9227404 -9624409 + AluY SINE Alu 1 308 0 23 0 0 0 chr4_random 9227413 9227436 -9624377 + AT_rich Low_complexity Low_complexity 1 23 0 275 250 121 8 chr4_random 9227504 9227636 -9624177 - Charlie4 DNA MER1_type 0 1961 1815 2529 162 12 28 chr4_random 9227684 9228004 -9623809 - MSTA LTR MaLR -10 418 105 2216 92 3 3 chr4_random 9228004 9228296 -9623517 + AluSc SINE Alu 2 293 -16 2529 162 12 28 chr4_random 9228296 9228400 -9623413 - MSTA LTR MaLR -323 105 1 397 279 29 52 chr4_random 9228498 9228670 -9623143 - Charlie4 DNA MER1_type -1774 187 20 2076 158 5 31 chr4_random 9229127 9229512 -9622301 - THE1C LTR MaLR 0 375 1 1187 104 5 16 chr4_random 9229512 9229704 -9622109 - THE1C-int LTR MaLR 0 1580 1391 4840 110 18 16 chr4_random 9229704 9230468 -9621345 + MER4E LTR ERV1 1 766 0 4579 150 25 42 chr4_random 9230468 9231330 -9620483 + MER4E-int LTR ERV1 1 848 -5910 1952 199 53 23 chr4_random 9233174 9233669 -9618144 + MER89-int LTR ERV1 129 583 -4064 254 321 0 0 chr4_random 9233878 9233962 -9617851 + MER89-int LTR ERV1 3686 3769 -4657 405 300 120 74 chr4_random 9234025 9234811 -9617002 + MER89-int LTR ERV1 3063 3884 -2917 862 324 26 21 chr4_random 9235388 9235808 -9616005 + MER89-int LTR ERV1 2138 2559 -2088 27 29 0 0 chr4_random 9238584 9238618 -9613195 + AT_rich Low_complexity Low_complexity 1 34 0 1149 197 28 5 chr4_random 9238693 9238982 -9612831 - MER2 DNA MER2_type -1 344 1 1407 219 53 20 chr4_random 9239103 9239459 -9612354 - MLT1A2 LTR MaLR -4 370 3 273 206 52 21 chr4_random 9239501 9239598 -9612215 + L1MC/D LINE L1 1239 1338 -5058 230 196 47 65 chr4_random 9239819 9239926 -9611887 + L1MC/D LINE L1 1387 1491 -4724 26 0 0 0 chr4_random 9240018 9240044 -9611769 + AT_rich Low_complexity Low_complexity 1 26 0 401 352 110 35 chr4_random 9240066 9240467 -9611346 + L1MC/D LINE L1 1886 2316 -4080 239 177 32 16 chr4_random 9240468 9240530 -9611283 + L1MC/D LINE L1 2288 2350 -3865 458 267 166 28 chr4_random 9240588 9241153 -9610660 + L1MC/D LINE L1 3956 4598 -1617 2144 139 22 8 chr4_random 9241223 9241590 -9610223 - L1PB3 LINE L1 -2 6152 5781 8782 206 30 107 chr4_random 9241592 9243610 -9608203 - L1PB3 LINE L1 -430 5724 3552 1549 165 34 52 chr4_random 9243610 9243938 -9607875 - THE1C LTR MaLR 0 375 54 8782 206 30 107 chr4_random 9243938 9244608 -9607205 - L1PB3 LINE L1 -2602 3552 2832 2124 128 45 28 chr4_random 9244608 9244966 -9606847 - THE1B LTR MaLR 0 364 1 8782 206 30 107 chr4_random 9244966 9246218 -9605595 - L1PB3 LINE L1 -3322 2832 1811 22 0 0 0 chr4_random 9246370 9246392 -9605421 + AT_rich Low_complexity Low_complexity 1 22 0 2848 73 93 0 chr4_random 9247182 9247592 -9604221 + LTR7 LTR ERV1 1 448 -2 15718 196 26 11 chr4_random 9248089 9250889 -9600924 + L1M1 LINE L1 17 2867 -4698 180 0 0 0 chr4_random 9250889 9250909 -9600904 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 15718 196 26 11 chr4_random 9250909 9251168 -9600645 + L1M1 LINE L1 2867 3121 -4444 30 59 0 0 chr4_random 9252766 9252817 -9598996 + AT_rich Low_complexity Low_complexity 1 51 0 286 255 99 28 chr4_random 9252946 9253087 -9598726 - L1MC4a LINE L1 -94 7714 7564 252 0 0 0 chr4_random 9253463 9253491 -9598322 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr4_random 9253644 9253665 -9598148 + AT_rich Low_complexity Low_complexity 1 21 0 604 238 146 27 chr4_random 9254459 9254830 -9596983 + L1MC/D LINE L1 5099 5510 -743 297 0 0 0 chr4_random 9254830 9254863 -9596950 + (CA)n Simple_repeat Simple_repeat 2 34 0 234 210 49 25 chr4_random 9254922 9255003 -9596810 + L1MC4 LINE L1 7960 8042 0 2102 108 26 7 chr4_random 9255030 9255335 -9596478 + AluSx SINE Alu 2 312 0 240 227 0 0 chr4_random 9256374 9256418 -9595395 - LTR16C LTR ERVL -19 472 429 22 0 0 0 chr4_random 9256777 9256799 -9595014 + AT_rich Low_complexity Low_complexity 1 22 0 783 239 52 105 chr4_random 9257594 9257975 -9593838 - MLT1A1 LTR MaLR -4 361 1 2306 78 0 28 chr4_random 9258487 9258807 -9593006 - AluY SINE Alu 0 311 1 1170 316 29 26 chr4_random 9259249 9259702 -9592111 + LTR16B LTR ERVL 3 456 -8 1456 170 16 4 chr4_random 9260884 9261131 -9590682 + MER76 LTR ERV 1 250 -438 784 247 106 30 chr4_random 9261200 9261435 -9590378 + MER76 LTR ERV 429 681 -7 371 362 60 0 chr4_random 9261442 9261591 -9590222 + HERV16 LTR ERVL 1221 1378 -3618 405 226 0 0 chr4_random 9261595 9261710 -9590103 + (TA)n Simple_repeat Simple_repeat 2 116 0 411 343 30 0 chr4_random 9261848 9262017 -9589796 + HERV16 LTR ERVL 1607 1780 -3216 371 298 75 47 chr4_random 9262629 9263559 -9588254 + L1M4 LINE L1 1146 2259 -4566 333 320 91 41 chr4_random 9264112 9264309 -9587504 + L1MEc LINE L1 1548 1754 -4642 22 0 0 0 chr4_random 9264900 9264922 -9586891 + AT_rich Low_complexity Low_complexity 1 22 0 496 325 53 46 chr4_random 9265245 9265682 -9586131 - L1MDa LINE L1 -4811 1729 1290 24 32 0 0 chr4_random 9267450 9267481 -9584332 + AT_rich Low_complexity Low_complexity 1 31 0 2607 84 3 8 chr4_random 9268117 9268474 -9583339 - THE1A LTR MaLR 0 355 1 26 50 0 0 chr4_random 9268848 9268888 -9582925 + AT_rich Low_complexity Low_complexity 1 40 0 2020 117 3 7 chr4_random 9269062 9269353 -9582460 + AluSc SINE Alu 4 293 -16 21 0 0 0 chr4_random 9269615 9269636 -9582177 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr4_random 9269957 9270001 -9581812 + AT_rich Low_complexity Low_complexity 1 44 0 629 207 53 7 chr4_random 9270250 9270400 -9581413 - AluJb SINE Alu -155 157 1 27 103 0 0 chr4_random 9270542 9270639 -9581174 + AT_rich Low_complexity Low_complexity 1 97 0 22 0 0 0 chr4_random 9270863 9270885 -9580928 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr4_random 9271205 9271260 -9580553 + AT_rich Low_complexity Low_complexity 1 55 0 22 0 0 0 chr4_random 9271327 9271349 -9580464 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr4_random 9271481 9271534 -9580279 + AT_rich Low_complexity Low_complexity 1 53 0 322 238 116 68 chr4_random 9272703 9272850 -9578963 - L2 LINE L2 -1 3312 3159 200 317 0 0 chr4_random 9273315 9273375 -9578438 + (CCTA)n Simple_repeat Simple_repeat 3 62 0 38 39 0 0 chr4_random 9274172 9274224 -9577589 + AT_rich Low_complexity Low_complexity 1 52 0 905 302 87 11 chr4_random 9274250 9274608 -9577205 + MLT1G LTR MaLR 11 395 -195 312 137 0 0 chr4_random 9274857 9274908 -9576905 + (TA)n Simple_repeat Simple_repeat 2 52 0 1821 252 61 65 chr4_random 9274937 9275252 -9576561 + L1ME2 LINE L1 3855 4170 -1976 198 0 0 0 chr4_random 9275252 9275274 -9576539 + (CA)n Simple_repeat Simple_repeat 1 22 0 1821 252 61 65 chr4_random 9275274 9275938 -9575875 + L1ME2 LINE L1 4170 4830 -1316 243 79 0 0 chr4_random 9275954 9275992 -9575821 + (CA)n Simple_repeat Simple_repeat 1 38 0 1335 261 102 14 chr4_random 9276098 9276832 -9574981 + L1ME2 LINE L1 5148 5959 -205 472 348 39 0 chr4_random 9276832 9276987 -9574826 + MER20 DNA MER1_type 2 162 -57 401 290 32 54 chr4_random 9277022 9277243 -9574570 + L1MA10 LINE L1 5948 6332 -1 * 407 283 40 57 chr4_random 9277239 9277591 -9574222 + L1MDa LINE L1 2384 2786 -3925 1432 207 21 10 chr4_random 9277630 9277920 -9573893 + AluJb SINE Alu 1 293 -19 1183 265 75 20 chr4_random 9278016 9278363 -9573450 + MLT1A2 LTR MaLR 9 374 0 635 267 82 30 chr4_random 9278381 9278819 -9572994 + L1MDa LINE L1 2866 3326 -3214 817 31 0 0 chr4_random 9278824 9278922 -9572891 + L1PA4 LINE L1 1 98 -6048 * 37977 41 2 2 chr4_random 9278889 9284453 -9567360 + L1PA4 LINE L1 578 6152 -3 191 146 24 0 chr4_random 9284456 9284497 -9567316 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 9898 217 24 16 chr4_random 9284510 9287987 -9563826 + L1PA15 LINE L1 2668 6165 0 4014 130 84 57 chr4_random 9289088 9290454 -9561359 + pTR5 LTR ERV1 743 2438 0 234 255 19 38 chr4_random 9290590 9290696 -9561117 + L1MC4 LINE L1 6601 6704 -1338 22 0 0 0 chr4_random 9291399 9291421 -9560392 + AT_rich Low_complexity Low_complexity 1 22 0 1993 204 27 0 chr4_random 9291595 9291963 -9559850 + ERVL LTR ERVL 4414 4791 -973 358 314 112 27 chr4_random 9292171 9292394 -9559419 - MIR SINE MIR -10 252 11 1409 251 42 30 chr4_random 9292897 9293396 -9558417 + MLT1D LTR MaLR 1 505 0 28 86 0 0 chr4_random 9295517 9295587 -9556226 + AT_rich Low_complexity Low_complexity 1 70 0 697 318 96 13 chr4_random 9296666 9297116 -9554697 + L1ME3A LINE L1 5355 5841 -329 4289 201 27 4 chr4_random 9297139 9298053 -9553760 - L1MA5 LINE L1 0 7002 6068 651 213 24 0 chr4_random 9298067 9298194 -9553619 - AluJb SINE Alu -182 130 1 10216 216 42 42 chr4_random 9298197 9302766 -9549047 - L1MA5 LINE L1 -769 6079 1387 1154 85 0 12 chr4_random 9302766 9302930 -9548883 + MLT2A2 LTR ERVL 292 453 0 291 28 0 0 chr4_random 9303152 9303188 -9548625 + (GA)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr4_random 9303536 9303566 -9548247 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr4_random 9304090 9304127 -9547686 + AT_rich Low_complexity Low_complexity 1 37 0 748 178 53 150 chr4_random 9304674 9305033 -9546780 + MLT1B LTR MaLR 15 338 -52 234 174 0 0 chr4_random 9305061 9305107 -9546706 + (CATA)n Simple_repeat Simple_repeat 2 47 0 408 20 0 0 chr4_random 9306096 9306145 -9545668 + (CA)n Simple_repeat Simple_repeat 2 50 0 1403 215 67 6 chr4_random 9306866 9307210 -9544603 + MLT1A1 LTR MaLR 1 365 0 241 278 141 61 chr4_random 9307957 9308155 -9543658 - MIR SINE MIR 0 262 49 43 71 0 0 chr4_random 9308656 9308741 -9543072 + AT_rich Low_complexity Low_complexity 1 85 0 233 150 33 33 chr4_random 9308842 9308902 -9542911 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 28 71 0 0 chr4_random 9309040 9309096 -9542717 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr4_random 9309162 9309185 -9542628 + AT_rich Low_complexity Low_complexity 1 23 0 741 260 30 90 chr4_random 9310010 9310897 -9540916 + MER52A LTR ERV1 671 1755 0 839 171 26 0 chr4_random 9312067 9312219 -9539594 + L1MA3 LINE L1 15 170 -7395 10772 188 74 36 chr4_random 9312225 9313691 -9538122 + L1MA3 LINE L1 521 1930 -5635 6097 56 14 46 chr4_random 9313691 9314586 -9537227 + SVA Other Other 520 1386 0 10772 188 74 36 chr4_random 9314586 9316407 -9535406 + L1MA3 LINE L1 1930 4308 -3257 1889 162 39 62 chr4_random 9316412 9316973 -9534840 - MLT2A2 LTR ERVL 0 554 1 318 232 71 36 chr4_random 9316973 9317085 -9534728 + L1MA3 LINE L1 4309 4424 -3141 9686 186 40 23 chr4_random 9317101 9320058 -9531755 + L1MA3 LINE L1 4314 7359 -365 1815 141 58 25 chr4_random 9320058 9320421 -9531392 - THE1C LTR MaLR 0 375 1 9686 186 40 23 chr4_random 9320421 9320789 -9531024 + L1MA3 LINE L1 7359 7719 -5 189 169 42 30 chr4_random 9321107 9321273 -9530540 + (TA)n Simple_repeat Simple_repeat 1 168 0 24 53 0 0 chr4_random 9321668 9321706 -9530107 + AT_rich Low_complexity Low_complexity 1 38 0 2644 255 51 23 chr4_random 9321834 9322584 -9529229 + ERVL-C1 LTR ERVL 1418 2188 -3576 * 2909 213 62 9 chr4_random 9322570 9323264 -9528549 + ERVL-C1 LTR ERVL 5017 5747 -17 1133 231 84 19 chr4_random 9323280 9323601 -9528212 + MLT2C1 LTR ERVL 8 349 -48 367 286 51 51 chr4_random 9325134 9325312 -9526501 - L2 LINE L2 -2 3311 3134 25 51 0 0 chr4_random 9326805 9326844 -9524969 + AT_rich Low_complexity Low_complexity 1 39 0 1516 202 52 31 chr4_random 9327148 9327530 -9524283 + MLT1B LTR MaLR 1 390 0 216 273 0 0 chr4_random 9327887 9327975 -9523838 + A-rich Low_complexity Low_complexity 1 88 0 24 32 0 0 chr4_random 9328357 9328388 -9523425 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr4_random 9328698 9328727 -9523086 + AT_rich Low_complexity Low_complexity 1 29 0 252 276 65 32 chr4_random 9328962 9329085 -9522728 - MLT1H LTR MaLR -339 210 84 3689 72 0 2 chr4_random 9329299 9329782 -9522031 + L1PA6 LINE L1 5668 6149 -5 291 315 71 13 chr4_random 9329777 9330015 -9521798 + L1M4 LINE L1 2287 2538 -3608 2118 203 19 2 chr4_random 9330052 9330471 -9521342 + MSTB LTR MaLR 1 426 0 226 271 14 0 chr4_random 9331150 9331220 -9520593 + L1MC4 LINE L1 6520 6590 -1452 302 182 33 124 chr4_random 9331275 9331396 -9520417 - Charlie5 DNA MER1_type -2502 110 1 257 217 58 0 chr4_random 9331533 9331602 -9520211 - LTR50 LTR ERVL -2 793 721 384 131 0 0 chr4_random 9331782 9331843 -9519970 + L1MB1 LINE L1 6099 6159 -9 30 27 0 0 chr4_random 9331846 9331883 -9519930 + AT_rich Low_complexity Low_complexity 1 37 0 1054 286 73 41 chr4_random 9331918 9332191 -9519622 + L1MC4 LINE L1 6673 6936 -1106 1963 151 3 0 chr4_random 9332191 9332489 -9519324 + AluSx SINE Alu 1 299 -13 1054 286 73 41 chr4_random 9332489 9333209 -9518604 + L1MC4 LINE L1 6936 7856 -186 201 259 19 19 chr4_random 9334012 9334066 -9517747 - L2 LINE L2 -49 3264 3211 292 364 166 25 chr4_random 9334224 9334511 -9517302 - L2 LINE L2 -246 3067 2743 277 336 74 27 chr4_random 9334591 9334740 -9517073 - L2 LINE L2 -456 2858 2703 914 165 54 11 chr4_random 9335031 9335342 -9516471 + THE1C LTR MaLR 1 375 0 8685 129 40 64 chr4_random 9335342 9336962 -9514851 + THE1C-int LTR MaLR 1 1580 0 1068 150 44 11 chr4_random 9336962 9337275 -9514538 + THE1C LTR MaLR 1 375 0 383 301 35 64 chr4_random 9338021 9338224 -9513589 + LTR16C LTR ERVL 287 483 -8 509 360 66 18 chr4_random 9340094 9340474 -9511339 + HERVL LTR ERVL 2079 2476 -3178 943 351 56 37 chr4_random 9340627 9341042 -9510771 + HERVL LTR ERVL 2871 3304 -2460 1604 199 0 7 chr4_random 9341042 9341338 -9510475 + AluJb SINE Alu 1 294 -18 943 351 56 37 chr4_random 9341338 9341548 -9510265 + HERVL LTR ERVL 3304 3508 -2256 457 309 35 25 chr4_random 9342352 9342553 -9509260 + LTR16B LTR ERVL 262 464 0 383 172 82 0 chr4_random 9342728 9342842 -9508971 - L1MC3 LINE L1 0 7785 7680 277 307 59 52 chr4_random 9342871 9343024 -9508789 + L2 LINE L2 2688 2841 -473 305 313 0 0 chr4_random 9343465 9343545 -9508268 + GA-rich Low_complexity Low_complexity 2 81 0 2024 125 10 7 chr4_random 9343687 9343983 -9507830 - AluSq SINE Alu -14 299 3 26 50 0 0 chr4_random 9344343 9344383 -9507430 + AT_rich Low_complexity Low_complexity 1 40 0 7461 261 21 60 chr4_random 9344996 9347966 -9503847 - L1P LINE L1 -1502 4644 1789 3708 127 58 5 chr4_random 9347983 9348651 -9503162 + L1M1 LINE L1 2532 3235 -4330 2644 222 24 13 chr4_random 9348648 9349412 -9502401 + L1M1 LINE L1 3523 4298 -3267 * 729 194 103 40 chr4_random 9349459 9349634 -9502179 - MLT1A2 LTR MaLR -186 188 3 230 260 14 14 chr4_random 9349769 9349842 -9501971 + HAL1 LINE L1 2075 2147 -360 813 307 17 50 chr4_random 9350562 9350920 -9500893 + MLT1H LTR MaLR 3 348 -201 204 298 35 0 chr4_random 9351833 9351890 -9499923 - MIR SINE MIR -8 254 196 1662 194 3 0 chr4_random 9352967 9353276 -9498537 - AluSx SINE Alu -2 310 1 266 270 14 0 chr4_random 9353357 9353431 -9498382 + (TG)n Simple_repeat Simple_repeat 2 76 0 2037 125 0 28 chr4_random 9353450 9353769 -9498044 - AluSx SINE Alu -2 310 1 2267 236 29 2 chr4_random 9353824 9354452 -9497361 - L1 LINE L1 -2487 3659 3015 797 273 5 5 chr4_random 9354455 9354649 -9497164 + MLT1A2 LTR MaLR 181 374 0 270 331 39 7 chr4_random 9354832 9354986 -9496827 - HAL1 LINE L1 -733 1774 1616 261 0 0 0 chr4_random 9355237 9355266 -9496547 + (T)n Simple_repeat Simple_repeat 1 29 0 348 94 0 0 chr4_random 9355676 9355729 -9496084 + (TG)n Simple_repeat Simple_repeat 2 54 0 3515 133 7 2 chr4_random 9356543 9357090 -9494723 - MER41A LTR ERV1 0 554 5 240 35 0 0 chr4_random 9357560 9357589 -9494224 + (TAGA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4_random 9358480 9358501 -9493312 + AT_rich Low_complexity Low_complexity 1 21 0 649 246 87 35 chr4_random 9358575 9358962 -9492851 + L1ME1 LINE L1 5071 5466 -700 1189 301 31 23 chr4_random 9359012 9359497 -9492316 + L1ME1 LINE L1 5660 6148 -18 1320 207 0 49 chr4_random 9359695 9360024 -9491789 + AluJb SINE Alu 13 327 0 22 35 0 0 chr4_random 9360134 9360163 -9491650 + AT_rich Low_complexity Low_complexity 1 29 0 2157 236 26 37 chr4_random 9360246 9360785 -9491028 + MER74A LTR ERVL 26 558 0 560 215 37 0 chr4_random 9362355 9362490 -9489323 - MLT2B2 LTR ERVL -375 140 1 1625 240 25 50 chr4_random 9362490 9362927 -9488886 + MLT1C LTR MaLR 13 438 -29 207 0 0 0 chr4_random 9363614 9363637 -9488176 + (TA)n Simple_repeat Simple_repeat 2 24 0 333 0 0 0 chr4_random 9363639 9363676 -9488137 + (CA)n Simple_repeat Simple_repeat 2 38 0 745 317 167 35 chr4_random 9364177 9365003 -9486810 - L2 LINE L2 -755 2559 1625 211 111 0 28 chr4_random 9365695 9365731 -9486082 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 329 288 76 23 chr4_random 9367081 9367213 -9484600 - L1ME3A LINE L1 0 6170 6032 247 167 30 0 chr4_random 9367428 9367494 -9484319 + (TA)n Simple_repeat Simple_repeat 2 69 0 262 261 31 8 chr4_random 9367538 9367668 -9484145 + (TA)n Simple_repeat Simple_repeat 2 134 0 402 327 106 24 chr4_random 9367700 9367954 -9483859 + L1MC4 LINE L1 6897 7171 -871 1058 268 145 58 chr4_random 9368483 9369315 -9482498 + L1ME1 LINE L1 5260 6326 -8 26 0 0 0 chr4_random 9369350 9369376 -9482437 + AT_rich Low_complexity Low_complexity 1 26 0 837 207 11 0 chr4_random 9369490 9369669 -9482144 - L1MB1 LINE L1 -1 6167 5987 768 302 50 25 chr4_random 9369733 9370259 -9481554 - L1M1 LINE L1 -4413 1969 1357 262 310 47 23 chr4_random 9370508 9370637 -9481176 + MIR SINE MIR 11 142 -120 224 311 113 63 chr4_random 9370754 9370976 -9480837 - L2 LINE L2 -86 3186 2954 211 256 128 13 chr4_random 9371580 9371658 -9480155 - L2 LINE L2 -17 3296 3210 24 0 0 0 chr4_random 9372624 9372648 -9479165 + AT_rich Low_complexity Low_complexity 1 24 0 399 349 74 39 chr4_random 9373341 9373731 -9478082 - MLT1I LTR MaLR 0 409 6 24 0 0 0 chr4_random 9373755 9373779 -9478034 + AT_rich Low_complexity Low_complexity 1 24 0 821 318 103 92 chr4_random 9374660 9374907 -9476906 - L2 LINE L2 -362 2952 2709 1470 148 30 39 chr4_random 9374907 9375212 -9476601 - L1MA9 LINE L1 -4 6308 6007 821 318 103 92 chr4_random 9375212 9376007 -9475806 - L2 LINE L2 -605 2709 1899 2203 187 65 24 chr4_random 9376077 9376616 -9475197 + L1 LINE L1 3893 4453 -1693 265 117 96 0 chr4_random 9376717 9376811 -9475002 + (TA)n Simple_repeat Simple_repeat 1 103 0 388 71 33 82 chr4_random 9376811 9376995 -9474818 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 292 157 69 10 chr4_random 9376998 9377100 -9474713 + (TA)n Simple_repeat Simple_repeat 1 108 0 784 52 40 58 chr4_random 9377100 9377274 -9474539 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 371 88 44 88 chr4_random 9377287 9377468 -9474345 + (TATAA)n Simple_repeat Simple_repeat 2 174 0 * 390 143 60 12 chr4_random 9377463 9377631 -9474182 + (TA)n Simple_repeat Simple_repeat 2 177 0 232 300 145 20 chr4_random 9377709 9377909 -9473904 - L1MC4 LINE L1 -1352 6690 6466 * 3680 54 0 0 chr4_random 9377904 9378368 -9473445 - L1PA4 LINE L1 -2305 3841 3378 12370 45 2 0 chr4_random 9378368 9380667 -9471146 + L1PA4 LINE L1 3851 6152 -3 26 0 0 0 chr4_random 9380667 9380693 -9471120 + AT_rich Low_complexity Low_complexity 1 26 0 848 214 0 0 chr4_random 9380750 9380909 -9470904 + FRAM SINE Alu 2 160 -6 244 146 0 0 chr4_random 9380974 9381015 -9470798 - L1ME2 LINE L1 -23 6141 6101 893 289 140 31 chr4_random 9381033 9381623 -9470190 - L1ME2 LINE L1 -152 6012 5328 204 40 0 0 chr4_random 9381623 9381648 -9470165 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 893 289 140 31 chr4_random 9381648 9381715 -9470098 - L1ME2 LINE L1 -836 5328 5270 182 188 0 21 chr4_random 9381775 9381823 -9469990 + (CATA)n Simple_repeat Simple_repeat 4 50 0 1506 174 0 4 chr4_random 9382046 9382299 -9469514 - AluSx SINE Alu -60 252 1 305 307 30 55 chr4_random 9382325 9382654 -9469159 - L1ME2 LINE L1 -1153 4993 4673 30 45 0 0 chr4_random 9383361 9383405 -9468408 + AT_rich Low_complexity Low_complexity 1 44 0 2439 201 45 26 chr4_random 9383880 9385079 -9466734 + L1M2 LINE L1 4606 5789 -502 303 175 0 0 chr4_random 9385079 9385136 -9466677 + (TG)n Simple_repeat Simple_repeat 2 58 0 1159 167 36 16 chr4_random 9385150 9385401 -9466412 + L1MA7 LINE L1 5296 5551 -740 407 115 21 21 chr4_random 9385401 9385497 -9466316 + (TA)n Simple_repeat Simple_repeat 1 96 0 2556 133 68 11 chr4_random 9385498 9385955 -9465858 + L1MA7 LINE L1 5807 6289 -2 186 326 120 18 chr4_random 9385974 9386250 -9465563 + L2 LINE L2 1593 1896 -1418 243 266 13 13 chr4_random 9386450 9386529 -9465284 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 302 260 173 53 chr4_random 9386610 9386760 -9465053 + L2 LINE L2 3144 3311 -2 213 254 0 0 chr4_random 9387046 9387117 -9464696 + (CATA)n Simple_repeat Simple_repeat 2 72 0 295 370 45 91 chr4_random 9387807 9388712 -9463101 + L2 LINE L2 273 1136 -2178 1199 276 77 24 chr4_random 9388806 9389638 -9462175 + L1ME2 LINE L1 2366 3241 -2905 1924 145 0 3 chr4_random 9389674 9389970 -9461843 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr4_random 9390214 9390237 -9461576 + AT_rich Low_complexity Low_complexity 1 23 0 695 333 89 31 chr4_random 9390439 9391043 -9460770 + L1ME2 LINE L1 3221 3859 -2287 678 228 5 5 chr4_random 9391066 9391250 -9460563 + L1MC1 LINE L1 4978 5161 -985 1955 134 17 0 chr4_random 9391353 9391519 -9460294 - AluSq SINE Alu -14 299 124 216 0 0 0 chr4_random 9391519 9391543 -9460270 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1955 134 17 0 chr4_random 9391543 9391668 -9460145 - AluSq SINE Alu -189 124 3 5037 193 37 27 chr4_random 9391671 9392353 -9459460 + L1MC1 LINE L1 5152 5853 -480 2371 70 0 0 chr4_random 9392353 9392651 -9459162 + AluY SINE Alu 1 298 -13 5037 193 37 27 chr4_random 9392651 9393127 -9458686 + L1MC1 LINE L1 5853 6323 -10 1484 222 0 7 chr4_random 9393127 9393444 -9458369 + AluJo SINE Alu 1 315 0 790 267 47 90 chr4_random 9393458 9394248 -9457565 + L1ME2 LINE L1 3841 4596 -1550 4970 254 83 7 chr4_random 9394488 9395657 -9456156 + L1PA13 LINE L1 1 1258 -5529 16369 199 27 11 chr4_random 9395660 9400925 -9450888 + L1PA13 LINE L1 1396 6811 -3 1100 249 52 20 chr4_random 9400958 9401396 -9450417 + L1ME2 LINE L1 4805 5256 -890 1376 299 62 26 chr4_random 9401421 9402164 -9449649 + L1ME2 LINE L1 5311 6080 -84 25 65 0 0 chr4_random 9402189 9402235 -9449578 + AT_rich Low_complexity Low_complexity 1 46 0 279 0 0 0 chr4_random 9403744 9403775 -9448038 + (TTTTG)n Simple_repeat Simple_repeat 1 31 0 254 180 16 0 chr4_random 9404067 9404128 -9447685 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 3523 99 2 14 chr4_random 9405448 9405965 -9445848 + MER9 LTR ERVK 1 511 0 365 334 52 22 chr4_random 9406496 9406864 -9444949 + L1M4 LINE L1 4882 5260 -886 271 207 37 0 chr4_random 9406864 9406946 -9444867 + (TA)n Simple_repeat Simple_repeat 1 85 0 25 83 0 0 chr4_random 9407123 9407183 -9444630 + AT_rich Low_complexity Low_complexity 1 60 0 283 295 60 18 chr4_random 9407229 9407395 -9444418 + L1ME3A LINE L1 5990 6162 -8 21 0 0 0 chr4_random 9407497 9407518 -9444295 + AT_rich Low_complexity Low_complexity 1 21 0 347 226 55 62 chr4_random 9407828 9407974 -9443839 + LTR16B LTR ERVL 36 180 -284 236 295 22 72 chr4_random 9408608 9408747 -9443066 - LTR16A1 LTR ERVL -32 425 294 294 327 65 0 chr4_random 9408835 9408942 -9442871 - LTR16A1 LTR ERVL -320 137 24 378 366 27 38 chr4_random 9409186 9409448 -9442365 + L2 LINE L2 2248 2506 -808 661 366 34 11 chr4_random 9409562 9409914 -9441899 + LTR16C LTR ERVL 128 487 -4 221 344 50 44 chr4_random 9409975 9410135 -9441678 + L2 LINE L2 2562 2722 -592 22 0 0 0 chr4_random 9410135 9410157 -9441656 + AT_rich Low_complexity Low_complexity 1 22 0 2085 141 0 0 chr4_random 9412144 9412443 -9439370 + AluSx SINE Alu 1 299 -13 701 327 43 50 chr4_random 9412452 9413106 -9438707 - L2 LINE L2 -1 3312 2665 1938 183 64 7 chr4_random 9413856 9414261 -9437552 - MSTA LTR MaLR 0 428 1 1988 203 50 6 chr4_random 9417757 9418397 -9433416 + L1PB4 LINE L1 4652 5262 -894 182 37 37 0 chr4_random 9418397 9418424 -9433389 + (CAA)n Simple_repeat Simple_repeat 2 29 0 1988 203 50 6 chr4_random 9418424 9419055 -9432758 + L1PB4 LINE L1 5262 6154 -2 301 331 16 8 chr4_random 9420245 9420369 -9431444 + MLT1L LTR MaLR 489 613 -2 1053 182 16 0 chr4_random 9420770 9420962 -9430851 + L1PBa LINE L1 3 197 -6666 * 8588 120 128 3 chr4_random 9420939 9423146 -9428667 + L1PBa LINE L1 599 3204 -3658 2612 104 57 0 chr4_random 9423146 9423570 -9428243 - L1P5 LINE L1 -432 5719 5272 424 193 45 0 chr4_random 9423537 9423625 -9428188 - L1 LINE L1 -3554 2592 2501 * 2422 120 15 39 chr4_random 9423613 9424021 -9427792 + L1PB1 LINE L1 5710 6107 -44 23 33 0 0 chr4_random 9424025 9424055 -9427758 + AT_rich Low_complexity Low_complexity 1 30 0 537 146 0 0 chr4_random 9424055 9424137 -9427676 - L1MC/D LINE L1 -741 5592 5511 1944 199 62 18 chr4_random 9424943 9425379 -9426434 - LOR1b LTR ERV1 -6 455 1 1041 69 0 0 chr4_random 9425602 9425732 -9426081 + AluY SINE Alu 1 130 -181 611 119 40 48 chr4_random 9425982 9426108 -9425705 - L1M2 LINE L1 -858 5442 5318 5300 81 3 0 chr4_random 9426109 9426816 -9424997 - L1PA7 LINE L1 -1 6153 5445 8642 97 10 13 chr4_random 9426816 9428130 -9423683 + L1P LINE L1 2287 3596 -2550 416 330 57 9 chr4_random 9428245 9428475 -9423338 - L1MC/D LINE L1 -768 5378 5138 23 54 0 0 chr4_random 9428490 9428527 -9423286 + AT_rich Low_complexity Low_complexity 1 37 0 1562 237 28 0 chr4_random 9428778 9429132 -9422681 - MLT1A1 LTR MaLR 0 365 2 195 222 0 0 chr4_random 9429429 9429465 -9422348 + L2 LINE L2 3236 3271 -1 23 0 0 0 chr4_random 9429834 9429857 -9421956 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr4_random 9429921 9429950 -9421863 + AT_rich Low_complexity Low_complexity 1 29 0 252 246 127 27 chr4_random 9430387 9430497 -9421316 - L2 LINE L2 -3 3310 3190 506 96 54 24 chr4_random 9430499 9430665 -9421148 + (TA)n Simple_repeat Simple_repeat 2 172 0 24 32 0 0 chr4_random 9432024 9432055 -9419758 + AT_rich Low_complexity Low_complexity 1 31 0 2164 197 24 26 chr4_random 9432263 9432801 -9419012 + L1MA10 LINE L1 5795 6331 -3 201 346 25 12 chr4_random 9433317 9433398 -9418415 + MIR3 SINE MIR 111 192 -16 1371 233 14 0 chr4_random 9433978 9434278 -9417535 + AluJo SINE Alu 5 308 0 5191 114 14 4 chr4_random 9434280 9435050 -9416763 - L1PA12 LINE L1 -1 6167 5390 2559 187 24 13 chr4_random 9435043 9435090 -9416723 + L1P LINE L1 4854 4899 -1247 * 2339 81 0 26 chr4_random 9435090 9435398 -9416415 + AluY SINE Alu 1 300 -11 2559 187 24 13 chr4_random 9435398 9435891 -9415922 + L1P LINE L1 4899 5400 -746 1257 314 18 38 chr4_random 9435907 9436410 -9415403 + L1M3d LINE L1 1 493 -5398 * 1962 289 71 49 chr4_random 9436383 9437271 -9414542 + L1M3d LINE L1 240 1156 -4735 2326 74 0 10 chr4_random 9437271 9437581 -9414232 + AluY SINE Alu 5 311 0 1962 289 71 49 chr4_random 9437581 9437720 -9414093 + L1M3d LINE L1 1156 1290 -4601 261 211 0 0 chr4_random 9488208 9488260 -9363553 - MIR SINE MIR 0 262 211 31 58 0 0 chr4_random 9489341 9489393 -9362420 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr4_random 9489587 9489618 -9362195 + AT_rich Low_complexity Low_complexity 1 31 0 240 86 0 0 chr4_random 9489729 9489764 -9362049 + (T)n Simple_repeat Simple_repeat 1 35 0 29 47 0 0 chr4_random 9490132 9490175 -9361638 + AT_rich Low_complexity Low_complexity 1 43 0 188 323 10 94 chr4_random 9490223 9490319 -9361494 + MIR SINE MIR 1 88 -174 21 0 0 0 chr4_random 9490363 9490384 -9361429 + AT_rich Low_complexity Low_complexity 1 21 0 3012 187 75 8 chr4_random 9490475 9491144 -9360669 + L1MA9 LINE L1 5595 6308 -4 21 0 0 0 chr4_random 9491193 9491214 -9360599 + AT_rich Low_complexity Low_complexity 1 21 0 2346 60 0 16 chr4_random 9491269 9491585 -9360228 + AluY SINE Alu 1 311 0 180 286 54 18 chr4_random 9491699 9491755 -9360058 - L2 LINE L2 -27 3286 3229 812 335 98 46 chr4_random 9492008 9492685 -9359128 - L2 LINE L2 -407 2907 2196 237 325 18 12 chr4_random 9493405 9493571 -9358242 + HAL1 LINE L1 1414 1580 -927 36 82 0 0 chr4_random 9493723 9493808 -9358005 + AT_rich Low_complexity Low_complexity 1 85 0 424 360 30 11 chr4_random 9494636 9494903 -9356910 + ERVL LTR ERVL 4323 4594 -1170 457 323 82 57 chr4_random 9495448 9495654 -9356159 + LTR16A1 LTR ERVL 45 244 -213 1910 135 3 64 chr4_random 9495654 9495981 -9355832 + AluSq SINE Alu 1 307 -6 457 323 82 57 chr4_random 9495981 9496177 -9355636 + LTR16A1 LTR ERVL 244 457 0 974 263 12 22 chr4_random 9496379 9496687 -9355126 - MLT1A1 LTR MaLR 0 365 1 26 0 0 0 chr4_random 9496905 9496931 -9354882 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr4_random 9497030 9497055 -9354758 + AT_rich Low_complexity Low_complexity 1 25 0 311 238 106 35 chr4_random 9497276 9497503 -9354310 - L1MEd LINE L1 -4969 1150 908 233 0 62 0 chr4_random 9497726 9497758 -9354055 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2377 53 0 0 chr4_random 9497758 9498057 -9353756 - L1PA4 LINE L1 -12 6143 5845 4544 160 14 12 chr4_random 9498176 9499003 -9352810 + L1PA15 LINE L1 5337 6165 0 304 22 22 22 chr4_random 9499026 9499072 -9352741 + (TG)n Simple_repeat Simple_repeat 2 47 0 2093 113 7 3 chr4_random 9500260 9500562 -9351251 - AluSg SINE Alu -7 303 1 226 260 91 0 chr4_random 9500772 9500849 -9350964 + L2 LINE L2 3225 3308 -5 1928 124 43 3 chr4_random 9502311 9502610 -9349203 + AluSq SINE Alu 1 311 -2 867 241 53 5 chr4_random 9502611 9502818 -9348995 + MER20 DNA MER1_type 2 218 -1 22 0 0 0 chr4_random 9503101 9503123 -9348690 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4_random 9504122 9504143 -9347670 + AT_rich Low_complexity Low_complexity 1 21 0 286 365 8 16 chr4_random 9505077 9505203 -9346610 - L2 LINE L2 -1 3312 3188 2141 125 0 0 chr4_random 9505392 9505705 -9346108 + AluSq SINE Alu 1 313 0 21 71 0 0 chr4_random 9506985 9507027 -9344786 + AT_rich Low_complexity Low_complexity 1 42 0 954 246 127 33 chr4_random 9507842 9508203 -9343610 + MSTD LTR MaLR 2 396 0 228 240 0 0 chr4_random 9508207 9508257 -9343556 + MSTD-int LTR MaLR 4 53 -1682 24 32 0 0 chr4_random 9509547 9509578 -9342235 + AT_rich Low_complexity Low_complexity 1 31 0 423 277 8 8 chr4_random 9509621 9509740 -9342073 - Tigger5 DNA MER2_type -1 2322 2204 347 275 0 12 chr4_random 9509768 9509848 -9341965 - Tigger5 DNA MER2_type -2244 79 1 194 346 60 50 chr4_random 9510114 9510296 -9341517 + L2 LINE L2 2896 3079 -193 528 300 49 62 chr4_random 9510524 9511047 -9340766 - L2 LINE L2 -155 3158 2510 1588 182 37 76 chr4_random 9511055 9511461 -9340352 - MLT1B LTR MaLR 0 390 1 356 291 119 7 chr4_random 9511801 9511952 -9339861 + MIR SINE MIR 84 251 -11 863 221 175 5 chr4_random 9512613 9512830 -9338983 - MIR SINE MIR 0 262 9 1004 197 29 0 chr4_random 9512922 9513130 -9338683 + L1M2 LINE L1 5441 5654 -658 395 315 47 47 chr4_random 9513132 9513475 -9338338 + HsTC2 DNA Tc2 1550 1892 -6 226 160 0 40 chr4_random 9513774 9513824 -9337989 + LTR66 LTR ERVL 392 439 -171 242 293 40 108 chr4_random 9513897 9514119 -9337694 - L2 LINE L2 -777 2537 2331 29 0 0 0 chr4_random 9514157 9514186 -9337627 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr4_random 9514879 9514902 -9336911 + AT_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr4_random 9515181 9515228 -9336585 + AT_rich Low_complexity Low_complexity 1 47 0 3330 193 65 58 chr4_random 9515306 9515725 -9336088 - L1MA9 LINE L1 -38 6274 5859 222 37 0 0 chr4_random 9515725 9515752 -9336061 + (TG)n Simple_repeat Simple_repeat 2 28 0 3330 193 65 58 chr4_random 9515752 9515861 -9335952 - L1MA9 LINE L1 -453 5859 5752 225 0 0 0 chr4_random 9515861 9515886 -9335927 + (TTA)n Simple_repeat Simple_repeat 3 27 0 5665 34 0 0 chr4_random 9515886 9516558 -9335255 - L1PA3 LINE L1 -18 6137 5466 3330 193 65 58 chr4_random 9516558 9516569 -9335244 - L1MA9 LINE L1 -560 5752 5743 2014 140 0 0 chr4_random 9516569 9516861 -9334952 - AluSx SINE Alu -14 298 7 3330 193 65 58 chr4_random 9516861 9517405 -9334408 - L1MA9 LINE L1 -569 5743 5176 3554 246 20 11 chr4_random 9517408 9518373 -9333440 + L1MA9 LINE L1 4189 5161 -985 21 36 0 0 chr4_random 9518448 9518476 -9333337 + AT_rich Low_complexity Low_complexity 1 28 0 747 296 13 26 chr4_random 9518608 9518838 -9332975 + L1MD1 LINE L1 26 252 -6288 2190 239 48 47 chr4_random 9518849 9519996 -9331817 + L1MD1 LINE L1 5180 6337 -299 22 35 0 0 chr4_random 9520498 9520527 -9331286 + AT_rich Low_complexity Low_complexity 1 29 0 224 279 25 0 chr4_random 9520642 9520721 -9331092 + (TG)n Simple_repeat Simple_repeat 2 82 0 2198 81 0 10 chr4_random 9521388 9521685 -9330128 - AluY SINE Alu -17 294 1 371 231 38 5 chr4_random 9521722 9521860 -9329953 + L1P LINE L1 3094 3234 -2912 892 301 38 35 chr4_random 9522155 9522553 -9329260 + L1ME3A LINE L1 5598 5996 -174 1982 54 84 0 chr4_random 9523218 9523479 -9328334 + AluY SINE Alu 23 305 -6 22 0 0 0 chr4_random 9524222 9524244 -9327569 + AT_rich Low_complexity Low_complexity 1 22 0 2172 101 0 16 chr4_random 9524398 9524714 -9327099 + AluSx SINE Alu 1 311 -1 1247 260 68 26 chr4_random 9524770 9525197 -9326616 + LTR40a LTR ERVL 75 519 0 34 96 0 0 chr4_random 9525319 9525423 -9326390 + AT_rich Low_complexity Low_complexity 1 104 0 2230 121 0 0 chr4_random 9526494 9526800 -9325013 - AluSx SINE Alu -6 306 1 22 70 0 0 chr4_random 9526983 9527026 -9324787 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr4_random 9527672 9527698 -9324115 + AT_rich Low_complexity Low_complexity 1 26 0 2014 88 7 26 chr4_random 9527698 9528004 -9323809 - L1PA8 LINE L1 -9 6163 5864 2992 102 7 1 chr4_random 9528004 9528703 -9323110 - L1PA8 LINE L1 -550 5622 4921 23 33 0 0 chr4_random 9528990 9529020 -9322793 + AT_rich Low_complexity Low_complexity 1 30 0 236 354 143 20 chr4_random 9529953 9530247 -9321566 + L3 LINE CR1 1081 1410 -167 32 57 0 0 chr4_random 9531271 9531324 -9320489 + AT_rich Low_complexity Low_complexity 1 53 0 292 158 0 0 chr4_random 9531776 9531833 -9319980 - L1MC1 LINE L1 0 6333 6277 12138 48 0 0 chr4_random 9531833 9534328 -9317485 + L1PA5 LINE L1 3655 6150 -4 4421 217 25 16 chr4_random 9534324 9535416 -9316397 - L1MC1 LINE L1 -45 6288 5183 * 2067 112 13 13 chr4_random 9536974 9537278 -9314535 - AluSq SINE Alu -7 306 3 467 249 154 35 chr4_random 9537770 9537939 -9313874 + MIR SINE MIR 2 190 -72 253 100 40 0 chr4_random 9537979 9538029 -9313784 + (CAT)n Simple_repeat Simple_repeat 2 53 0 385 305 37 6 chr4_random 9538180 9538344 -9313469 - L1ME1 LINE L1 -10 6156 5988 744 315 101 9 chr4_random 9538365 9538927 -9312886 - L1ME1 LINE L1 -237 5929 5316 368 288 96 0 chr4_random 9538999 9539228 -9312585 - L1ME1 LINE L1 -1405 4741 4491 969 309 111 0 chr4_random 9539334 9539713 -9312100 - MLT1H LTR MaLR -128 421 1 21 71 0 0 chr4_random 9540069 9540111 -9311702 + AT_rich Low_complexity Low_complexity 1 42 0 35 0 0 0 chr4_random 9540133 9540168 -9311645 + AT_rich Low_complexity Low_complexity 1 35 0 1712 168 64 0 chr4_random 9540170 9540497 -9311316 - MER7A DNA MER2_type 0 346 1 28 29 0 0 chr4_random 9540608 9540643 -9311170 + AT_rich Low_complexity Low_complexity 1 35 0 1716 268 24 21 chr4_random 9540651 9541226 -9310587 - L1ME1 LINE L1 -4 6162 5586 358 242 124 20 chr4_random 9541246 9541399 -9310414 - L1ME1 LINE L1 -2215 3931 3763 1170 288 14 34 chr4_random 9541404 9541848 -9309965 + L1M1 LINE L1 1759 2193 -5372 3277 209 39 68 chr4_random 9541850 9542968 -9308845 + L1M1 LINE L1 2303 3388 -4177 2159 312 69 36 chr4_random 9543006 9544002 -9307811 + L1MA5 LINE L1 8 1036 -5753 1877 213 30 53 chr4_random 9543984 9544399 -9307414 + L1MA5 LINE L1 1608 2031 -4757 * 2607 32 0 7 chr4_random 9544399 9544708 -9307105 + AluY SINE Alu 1 307 -4 1877 213 30 53 chr4_random 9544708 9545520 -9306293 + L1MA5 LINE L1 2031 3001 -3787 * 2234 204 8 6 chr4_random 9545515 9545990 -9305823 + L1MA5 LINE L1 4527 5002 -1786 3278 189 35 20 chr4_random 9546008 9546759 -9305054 + L1MA5 LINE L1 6175 6936 -6 441 257 118 0 chr4_random 9546807 9546959 -9304854 - L2 LINE L2 -1240 2074 1905 21 0 0 0 chr4_random 9547131 9547152 -9304661 + AT_rich Low_complexity Low_complexity 1 21 0 1800 199 57 70 chr4_random 9547852 9548364 -9303449 + MLT1D LTR MaLR 1 505 0 22 35 0 0 chr4_random 9548395 9548424 -9303389 + AT_rich Low_complexity Low_complexity 1 29 0 433 325 126 39 chr4_random 9548919 9549307 -9302506 + L1ME4a LINE L1 5433 5854 -267 26 30 0 0 chr4_random 9549416 9549449 -9302364 + AT_rich Low_complexity Low_complexity 1 33 0 7138 171 13 8 chr4_random 9549464 9550749 -9301064 - HSMAR2 DNA Mariner -1 1301 10 26 50 0 0 chr4_random 9550758 9550798 -9301015 + AT_rich Low_complexity Low_complexity 1 40 0 2436 192 2 0 chr4_random 9551079 9551500 -9300313 + MSTB LTR MaLR 1 422 -4 295 325 155 37 chr4_random 9551814 9552137 -9299676 + L2 LINE L2 2323 2683 -631 1527 130 61 107 chr4_random 9552191 9552582 -9299231 - THE1C LTR MaLR -2 373 1 23 68 0 0 chr4_random 9553495 9553539 -9298274 + AT_rich Low_complexity Low_complexity 1 44 0 27 62 0 0 chr4_random 9554331 9554379 -9297434 + AT_rich Low_complexity Low_complexity 1 48 0 310 274 0 19 chr4_random 9555265 9555371 -9296442 + GA-rich Low_complexity Low_complexity 2 105 0 22 35 0 0 chr4_random 9555465 9555494 -9296319 + AT_rich Low_complexity Low_complexity 1 29 0 371 329 44 53 chr4_random 9555736 9555964 -9295849 - MIR SINE MIR -26 236 11 22 0 0 0 chr4_random 9556498 9556520 -9295293 + AT_rich Low_complexity Low_complexity 1 22 0 2181 169 26 9 chr4_random 9556667 9557088 -9294725 + MSTA LTR MaLR 1 428 0 5933 187 22 7 chr4_random 9557088 9558198 -9293615 + MSTA-int LTR MaLR 1 1127 -524 192 152 0 0 chr4_random 9558205 9558238 -9293575 + T-rich Low_complexity Low_complexity 1 33 0 2269 197 14 0 chr4_random 9558291 9558713 -9293100 + MSTA LTR MaLR 1 428 0 33 0 0 0 chr4_random 9560160 9560193 -9291620 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr4_random 9560380 9560410 -9291403 + AT_rich Low_complexity Low_complexity 1 30 0 481 328 79 0 chr4_random 9560465 9560642 -9291171 - MIR SINE MIR -64 198 8 1454 241 80 9 chr4_random 9560956 9561392 -9290421 - MLT1C LTR MaLR 0 467 1 21 82 0 0 chr4_random 9561556 9561605 -9290208 + AT_rich Low_complexity Low_complexity 1 49 0 804 327 85 51 chr4_random 9561930 9562695 -9289118 - HAL1 LINE L1 -1626 881 91 24 85 0 0 chr4_random 9563275 9563334 -9288479 + AT_rich Low_complexity Low_complexity 1 59 0 25 31 0 0 chr4_random 9563534 9563566 -9288247 + AT_rich Low_complexity Low_complexity 1 32 0 1998 131 0 0 chr4_random 9565522 9565832 -9285981 - AluSx SINE Alu 0 310 1 2759 100 2 24 chr4_random 9566460 9566871 -9284942 + MLT2A1 LTR ERVL 3 404 -40 231 167 0 0 chr4_random 9566987 9567029 -9284784 + (TG)n Simple_repeat Simple_repeat 1 42 0 402 91 0 0 chr4_random 9567029 9567084 -9284729 + MLT2A1 LTR ERVL 390 444 0 1288 196 27 44 chr4_random 9567787 9568083 -9283730 + L1MC1 LINE L1 6037 6327 -6 1338 220 5 93 chr4_random 9568583 9569011 -9282802 + MLT1B LTR MaLR 1 390 0 245 360 78 0 chr4_random 9569167 9569320 -9282493 + L2 LINE L2 2003 2167 -1147 601 361 51 15 chr4_random 9569402 9569477 -9282336 + L2 LINE L2 2395 2466 -847 189 0 0 0 chr4_random 9569477 9569498 -9282315 + (TC)n Simple_repeat Simple_repeat 2 22 0 601 361 51 15 chr4_random 9569498 9570162 -9281651 + L2 LINE L2 2466 3252 -61 23 33 0 0 chr4_random 9570188 9570218 -9281595 + AT_rich Low_complexity Low_complexity 1 30 0 181 313 157 45 chr4_random 9570299 9570433 -9281380 - MIR SINE MIR -106 156 8 1500 209 219 66 chr4_random 9570942 9571371 -9280442 + LTR28 LTR ERV1 1 363 -657 2108 89 10 20 chr4_random 9571371 9571674 -9280139 + AluY SINE Alu 9 308 -3 1500 209 219 66 chr4_random 9571674 9572098 -9279715 + LTR28 LTR ERV1 363 1020 0 968 204 10 80 chr4_random 9572935 9573248 -9278565 + L1MC3 LINE L1 7483 7773 -12 689 219 0 0 chr4_random 9573682 9573805 -9278008 + AluJb SINE Alu 168 290 -22 2959 134 26 28 chr4_random 9573971 9574409 -9277404 - MER84 LTR ERVI 0 507 69 3352 108 63 32 chr4_random 9574409 9574946 -9276867 - MER41C LTR ERV1 0 554 1 2959 134 26 28 chr4_random 9574946 9575014 -9276799 - MER84 LTR ERVI -438 69 2 294 268 49 0 chr4_random 9575730 9575812 -9276001 + L2 LINE L2 3220 3305 -8 22 56 0 0 chr4_random 9576359 9576395 -9275418 + AT_rich Low_complexity Low_complexity 1 36 0 455 300 138 47 chr4_random 9578446 9578829 -9272984 + L2 LINE L2 2070 2487 -827 1025 228 53 53 chr4_random 9578834 9579239 -9272574 + MLT2B1 LTR ERVL 1 412 -2 350 303 49 0 chr4_random 9579313 9579435 -9272378 + L2 LINE L2 2577 2704 -610 2010 284 69 17 chr4_random 9579572 9580654 -9271159 - L1MCb LINE L1 -2962 3602 2503 2163 224 101 39 chr4_random 9580657 9581201 -9270612 - L1MCb LINE L1 -4197 2367 1859 2099 154 11 27 chr4_random 9581201 9581571 -9270242 + THE1B LTR MaLR 1 364 0 2163 224 101 39 chr4_random 9581571 9582301 -9269512 - L1MCb LINE L1 -4705 1859 888 378 0 0 0 chr4_random 9582301 9582343 -9269470 + (TG)n Simple_repeat Simple_repeat 2 43 0 2163 224 101 39 chr4_random 9582343 9582425 -9269388 - L1MCb LINE L1 -5676 888 813 1937 140 95 27 chr4_random 9582443 9582844 -9268969 - MSTA LTR MaLR 0 428 1 7255 170 19 32 chr4_random 9582849 9584465 -9267348 - MSTA-int LTR MaLR -6 1574 3 1758 151 167 6 chr4_random 9584470 9584641 -9267172 - MSTA LTR MaLR -4 424 282 258 32 0 0 chr4_random 9584641 9584672 -9267141 + (GA)n Simple_repeat Simple_repeat 1 31 0 1758 151 167 6 chr4_random 9584672 9584865 -9266948 - MSTA LTR MaLR -146 282 1 2355 281 28 26 chr4_random 9584865 9585662 -9266151 - L1MCb LINE L1 -5246 799 2 296 294 157 17 chr4_random 9585688 9586045 -9265768 - L1M4 LINE L1 -1113 5033 4627 557 310 54 12 chr4_random 9586088 9586330 -9265483 - ERVL LTR ERVL -1091 4673 4422 387 322 91 37 chr4_random 9586472 9586770 -9265043 - MLT2F LTR ERVL -19 644 331 396 290 99 26 chr4_random 9586804 9587019 -9264794 - MLT2F LTR ERVL -430 233 7 564 308 114 23 chr4_random 9587035 9587240 -9264573 - L1M4 LINE L1 -1712 4434 4249 1975 162 30 33 chr4_random 9587240 9587605 -9264208 - THE1B LTR MaLR 0 364 1 564 308 114 23 chr4_random 9587605 9588098 -9263715 - L1M4 LINE L1 -1897 4249 3672 237 215 15 15 chr4_random 9588115 9588180 -9263633 + (TA)n Simple_repeat Simple_repeat 1 65 0 2267 75 0 28 chr4_random 9588205 9588523 -9263290 - AluY SINE Alu -2 309 1 207 0 0 0 chr4_random 9588749 9588772 -9263041 + (TG)n Simple_repeat Simple_repeat 2 24 0 238 250 0 0 chr4_random 9588845 9588913 -9262900 - L1M4 LINE L1 -3020 3126 3059 483 298 50 7 chr4_random 9589212 9589491 -9262322 - L1M4 LINE L1 -3430 2716 2426 2131 140 46 6 chr4_random 9589522 9589871 -9261942 + L1P3 LINE L1 1 363 -6098 278 306 82 34 chr4_random 9590196 9590343 -9261470 - LTR33A LTR ERVL -338 185 32 21 0 0 0 chr4_random 9590356 9590377 -9261436 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4_random 9593557 9593581 -9258232 + AT_rich Low_complexity Low_complexity 1 24 0 1793 255 110 21 chr4_random 9595332 9596288 -9255525 - L1MC4 LINE L1 -174 7868 6809 325 229 49 41 chr4_random 9596296 9596418 -9255395 + L1MC4 LINE L1 7371 7493 -549 1082 200 47 25 chr4_random 9596434 9596669 -9255144 - MLT1A1 LTR MaLR -125 240 1 336 24 0 0 chr4_random 9597012 9597053 -9254760 + (CA)n Simple_repeat Simple_repeat 2 42 0 271 263 79 0 chr4_random 9597055 9597131 -9254682 + MER82 DNA MER2_type 4 85 -568 226 294 21 98 chr4_random 9597198 9597341 -9254472 - MIR SINE MIR -111 151 20 373 258 43 0 chr4_random 9597380 9597473 -9254340 + MER82 DNA MER2_type 556 652 -1 358 230 32 16 chr4_random 9597475 9597601 -9254212 + (TATATG)n Simple_repeat Simple_repeat 4 131 0 635 270 63 53 chr4_random 9597854 9598139 -9253674 + LTR40a LTR ERVL 231 518 -1 22 0 0 0 chr4_random 9601123 9601145 -9250668 + AT_rich Low_complexity Low_complexity 1 22 0 480 207 100 10 chr4_random 9601158 9601306 -9250507 + MLT1A1 LTR MaLR 210 365 0 2586 224 107 20 chr4_random 9601548 9602192 -9249621 + MER44D DNA MER2_type 6 705 0 722 303 7 48 chr4_random 9602401 9602695 -9249118 + L1PA12 LINE L1 1372 1653 -5928 4641 257 35 13 chr4_random 9602757 9604143 -9247670 + L1PA12 LINE L1 2470 3893 -3691 447 106 0 0 chr4_random 9604143 9604209 -9247604 + (TA)n Simple_repeat Simple_repeat 2 67 0 4641 257 35 13 chr4_random 9604209 9604430 -9247383 + L1PA12 LINE L1 3893 4108 -3476 1088 332 73 30 chr4_random 9604825 9605470 -9246343 - L1M2c LINE L1 -6114 675 3 1997 113 7 3 chr4_random 9605561 9605845 -9245968 + AluSx SINE Alu 1 285 -27 381 141 0 0 chr4_random 9606133 9606204 -9245609 + (TC)n Simple_repeat Simple_repeat 2 72 0 25 83 0 0 chr4_random 9606600 9606660 -9245153 + AT_rich Low_complexity Low_complexity 1 60 0 22 35 0 0 chr4_random 9607246 9607275 -9244538 + AT_rich Low_complexity Low_complexity 1 29 0 214 309 56 56 chr4_random 9607360 9607486 -9244327 - L2 LINE L2 -1 3312 3187 33 25 0 0 chr4_random 9608661 9608701 -9243112 + AT_rich Low_complexity Low_complexity 1 40 0 240 166 76 7 chr4_random 9608731 9608876 -9242937 + (TA)n Simple_repeat Simple_repeat 1 155 0 31 26 0 0 chr4_random 9609154 9609192 -9242621 + AT_rich Low_complexity Low_complexity 1 38 0 3908 119 2 0 chr4_random 9609602 9610183 -9241630 + L1PA13 LINE L1 5582 6163 0 23 54 0 0 chr4_random 9610191 9610228 -9241585 + AT_rich Low_complexity Low_complexity 1 37 0 2213 92 3 0 chr4_random 9610418 9610712 -9241101 - AluSx SINE Alu -17 295 1 201 122 49 0 chr4_random 9610826 9610867 -9240946 + (TA)n Simple_repeat Simple_repeat 2 44 0 438 285 54 55 chr4_random 9611922 9612250 -9239563 + L1M4c LINE L1 1062 1389 -5174 183 100 0 0 chr4_random 9612250 9612280 -9239533 + (CA)n Simple_repeat Simple_repeat 1 30 0 438 285 54 55 chr4_random 9612280 9612472 -9239341 + L1M4c LINE L1 1389 1735 -4828 1650 133 76 4 chr4_random 9612607 9612871 -9238942 + THE1C LTR MaLR 93 375 0 621 119 10 0 chr4_random 9612876 9612977 -9238836 + L1PB4 LINE L1 5807 5908 -248 604 116 0 0 chr4_random 9612979 9613065 -9238748 - AluY SINE Alu -224 86 1 1930 134 7 0 chr4_random 9614405 9614726 -9237087 - AluSx SINE Alu 0 323 1 35353 113 13 20 chr4_random 9616043 9622759 -9229054 - L1PA6 LINE L1 0 6154 11 2175 226 39 7 chr4_random 9622838 9623400 -9228413 - L1MC3 LINE L1 -1902 5883 5304 706 277 71 21 chr4_random 9623408 9623787 -9228026 - L1MC3 LINE L1 -1419 4727 4330 4770 182 18 24 chr4_random 9623953 9624125 -9227688 + L1PA13 LINE L1 2684 2856 -3307 1968 147 3 0 chr4_random 9624125 9624417 -9227396 + AluSq SINE Alu 1 293 -20 4770 182 18 24 chr4_random 9624417 9626608 -9225205 + L1PA13 LINE L1 2852 6159 0 4770 146 30 34 chr4_random 9626608 9627305 -9224508 + L1PA13 LINE L1 5147 5841 -322 1970 132 25 0 chr4_random 9627305 9627586 -9224227 + AluSq SINE Alu 1 288 -25 4770 146 30 34 chr4_random 9627586 9627908 -9223905 + L1PA13 LINE L1 5841 6163 0 257 283 81 10 chr4_random 9627988 9628087 -9223726 + MIR SINE MIR 60 165 -97 196 318 48 0 chr4_random 9628207 9628270 -9223543 + MIR SINE MIR 86 151 -111 1351 248 64 10 chr4_random 9628854 9629245 -9222568 - MER63 DNA MER1_type 0 1061 650 23 33 0 0 chr4_random 9629856 9629886 -9221927 + AT_rich Low_complexity Low_complexity 1 30 0 239 318 0 0 chr4_random 9630260 9630323 -9221490 + L2 LINE L2 2707 2769 -545 238 148 37 0 chr4_random 9631174 9631228 -9220585 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 584 295 65 22 chr4_random 9631510 9631913 -9219900 - L1ME3A LINE L1 -230 5940 5521 543 291 31 21 chr4_random 9632803 9633143 -9218670 - L1MC4 LINE L1 -470 7378 6997 22 0 0 0 chr4_random 9633709 9633731 -9218082 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4_random 9634018 9634039 -9217774 + AT_rich Low_complexity Low_complexity 1 21 0 214 226 19 0 chr4_random 9634138 9634191 -9217622 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 36 0 0 chr4_random 9634302 9634330 -9217483 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr4_random 9634953 9634982 -9216831 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr4_random 9635037 9635075 -9216738 + (TG)n Simple_repeat Simple_repeat 2 39 0 381 117 0 0 chr4_random 9635900 9635960 -9215853 + (CA)n Simple_repeat Simple_repeat 1 60 0 5039 16 0 0 chr4_random 9637404 9637980 -9213833 - L1PA2 LINE L1 -3 6152 5577 3952 27 0 0 chr4_random 9637980 9638456 -9213357 + L1P LINE L1 4829 5304 -842 852 355 45 20 chr4_random 9641076 9641722 -9210091 - ERVL LTR ERVL -2617 3147 2486 427 350 57 33 chr4_random 9641961 9642261 -9209552 - ERVL LTR ERVL -3564 2200 1894 397 388 22 14 chr4_random 9642434 9642710 -9209103 - ERVL LTR ERVL -3437 1559 1282 24 77 0 0 chr4_random 9643799 9643851 -9207962 + AT_rich Low_complexity Low_complexity 1 52 0 2037 114 0 54 chr4_random 9644232 9644565 -9207248 - THE1C LTR MaLR -57 318 4 25 0 0 0 chr4_random 9645148 9645173 -9206640 + AT_rich Low_complexity Low_complexity 1 25 0 631 322 78 45 chr4_random 9646061 9646548 -9205265 - MLT1J LTR MaLR -7 504 2 267 31 0 0 chr4_random 9648015 9648047 -9203766 + (CA)n Simple_repeat Simple_repeat 2 33 0 258 111 0 0 chr4_random 9648483 9648519 -9203294 + tRNA-Gly-GGG tRNA tRNA 1 36 -38 324 200 0 0 chr4_random 9648876 9648946 -9202867 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 248 247 100 53 chr4_random 9649723 9649873 -9201940 - MLT1K LTR MaLR -27 561 405 21 0 0 0 chr4_random 9650178 9650199 -9201614 + AT_rich Low_complexity Low_complexity 1 21 0 396 269 60 89 chr4_random 9650199 9650414 -9201399 + MIR SINE MIR 23 231 -31 475 122 98 0 chr4_random 9650522 9650604 -9201209 + MER41A LTR ERV1 383 472 -82 25 51 0 0 chr4_random 9651138 9651177 -9200636 + AT_rich Low_complexity Low_complexity 1 39 0 2319 76 0 0 chr4_random 9651343 9651634 -9200179 - AluY SINE Alu -20 291 1 26 0 0 0 chr4_random 9652042 9652068 -9199745 + AT_rich Low_complexity Low_complexity 1 26 0 204 149 0 0 chr4_random 9652085 9652132 -9199681 + (TA)n Simple_repeat Simple_repeat 1 47 0 1464 252 35 0 chr4_random 9652211 9652556 -9199257 + MLT1A1 LTR MaLR 1 357 -8 22 0 0 0 chr4_random 9653468 9653490 -9198323 + AT_rich Low_complexity Low_complexity 1 22 0 2023 118 46 52 chr4_random 9653816 9654182 -9197631 + THE1B LTR MaLR 1 364 0 499 344 139 36 chr4_random 9654187 9654769 -9197044 - L2 LINE L2 -543 2771 2130 21 36 0 0 chr4_random 9655525 9655553 -9196260 + AT_rich Low_complexity Low_complexity 1 28 0 5588 110 21 8 chr4_random 9656413 9657518 -9194295 - L1PA14 LINE L1 0 6161 5026 336 110 24 12 chr4_random 9658468 9658550 -9193263 + (TA)n Simple_repeat Simple_repeat 2 84 0 290 144 11 33 chr4_random 9658576 9658666 -9193147 + (TA)n Simple_repeat Simple_repeat 2 89 0 24 0 0 0 chr4_random 9658917 9658941 -9192872 + AT_rich Low_complexity Low_complexity 1 24 0 508 250 21 78 chr4_random 9659661 9659853 -9191960 + MLT1J2 LTR MaLR 32 212 -238 474 352 40 24 chr4_random 9660038 9660291 -9191522 + L2 LINE L2 2529 2785 -529 207 0 0 0 chr4_random 9660460 9660483 -9191330 + (CA)n Simple_repeat Simple_repeat 2 24 0 6015 139 28 0 chr4_random 9661177 9662171 -9189642 - L1MA3 LINE L1 -5 7719 6698 333 273 23 0 chr4_random 9662173 9662261 -9189552 + L1MC4 LINE L1 6614 6703 -1339 2708 196 30 0 chr4_random 9662288 9662863 -9188950 - L1MA3 LINE L1 -874 6691 6100 247 182 0 0 chr4_random 9662903 9662947 -9188866 - THE1A LTR MaLR 0 355 312 419 143 0 0 chr4_random 9662947 9663010 -9188803 + THE1-int LTR MaLR 512 574 -1006 1869 134 16 10 chr4_random 9663025 9663331 -9188482 - THE1A LTR MaLR -47 308 1 10652 126 5 0 chr4_random 9663331 9664903 -9186910 - THE1A-int LTR MaLR -1 1579 1 2049 154 8 11 chr4_random 9664903 9665259 -9186554 - THE1A LTR MaLR 0 355 1 6472 217 38 10 chr4_random 9665266 9666192 -9185621 - L1MA3 LINE L1 -1512 6053 5062 2273 78 7 0 chr4_random 9666192 9666501 -9185312 - AluY SINE Alu 0 311 1 6472 217 38 10 chr4_random 9666501 9667135 -9184678 - L1MA3 LINE L1 -2503 5062 4448 2887 216 4 0 chr4_random 9667134 9667666 -9184147 - L1MA3 LINE L1 -6961 604 71 * 276 328 25 8 chr4_random 9667819 9667941 -9183872 - MIR SINE MIR -16 246 123 528 309 43 19 chr4_random 9668781 9668988 -9182825 + LTR16C LTR ERVL 132 343 -148 238 323 79 0 chr4_random 9669258 9669385 -9182428 + MLT1J LTR MaLR 330 466 -45 210 147 44 44 chr4_random 9669485 9669553 -9182260 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 341 239 80 0 chr4_random 9670822 9670910 -9180903 + L2 LINE L2 3179 3273 -40 288 0 0 0 chr4_random 9671898 9671930 -9179883 + (TG)n Simple_repeat Simple_repeat 2 33 0 269 246 83 40 chr4_random 9672839 9672980 -9178833 + MLT1F LTR MaLR 406 542 0 265 271 43 0 chr4_random 9673107 9673177 -9178636 - MER5A DNA MER1_type -78 111 39 348 266 126 35 chr4_random 9673794 9673993 -9177820 + HAL1 LINE L1 1127 1343 -1164 180 0 0 0 chr4_random 9674554 9674574 -9177239 + (T)n Simple_repeat Simple_repeat 1 20 0 26 50 0 0 chr4_random 9675679 9675719 -9176094 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr4_random 9676944 9676973 -9174840 + AT_rich Low_complexity Low_complexity 1 29 0 233 220 51 59 chr4_random 9677375 9677493 -9174320 + L1ME4a LINE L1 5994 6110 -11 257 271 39 50 chr4_random 9677670 9677851 -9173962 - L1MC/D LINE L1 -1926 5882 5704 3737 122 2 15 chr4_random 9678551 9679143 -9172670 - L1PA11 LINE L1 -4 6170 5587 3364 193 76 38 chr4_random 9680370 9680451 -9171362 - L1MA6 LINE L1 -24 6512 6435 2343 82 0 3 chr4_random 9680451 9680755 -9171058 - AluY SINE Alu -8 303 1 3364 193 76 38 chr4_random 9680755 9681017 -9170796 - L1MA6 LINE L1 -101 6435 6184 207 0 0 0 chr4_random 9681017 9681040 -9170773 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 306 87 0 0 chr4_random 9681039 9681085 -9170728 + (CA)n Simple_repeat Simple_repeat 1 46 0 3364 193 76 38 chr4_random 9681040 9681599 -9170214 - L1MA6 LINE L1 -352 6184 5622 * 7223 220 44 51 chr4_random 9681593 9682236 -9169577 - L1MA6 LINE L1 -1962 4420 3774 1534 45 0 10 chr4_random 9682236 9682435 -9169378 + L1PA5 LINE L1 5950 6148 -6 7223 220 44 51 chr4_random 9682435 9684183 -9167630 - L1MA6 LINE L1 -2608 3774 2029 230 139 0 0 chr4_random 9684316 9684352 -9167461 - L1M2 LINE L1 -4174 2675 2640 1642 251 44 13 chr4_random 9884694 9885144 -8966669 + MLT1C LTR MaLR 4 467 0 365 262 97 68 chr4_random 9885235 9885713 -8966100 - L1MEc LINE L1 -3613 2602 2151 6598 63 2 3 chr4_random 9885816 9886676 -8965137 + L1PA6 LINE L1 5296 6154 0 753 291 5 0 chr4_random 9886678 9886901 -8964912 + L1MD3 LINE L1 7413 7636 -359 252 0 0 0 chr4_random 9887045 9887073 -8964740 + (CA)n Simple_repeat Simple_repeat 1 28 0 225 0 0 0 chr4_random 9887233 9887258 -8964555 + (T)n Simple_repeat Simple_repeat 1 25 0 426 298 166 10 chr4_random 9888211 9888416 -8963397 + L1MEc LINE L1 1900 2136 -4260 8255 184 31 17 chr4_random 9888418 9888576 -8963237 - Tigger2 DNA MER2_type 0 2718 2564 207 0 0 0 chr4_random 9888576 9888599 -8963214 + (TG)n Simple_repeat Simple_repeat 2 24 0 192 77 0 0 chr4_random 9888598 9888624 -8963189 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 8255 184 31 17 chr4_random 9888599 9890032 -8961781 - Tigger2 DNA MER2_type -154 2564 1131 820 205 54 0 chr4_random 9890031 9890216 -8961597 - Tigger2 DNA MER2_type -2523 195 1 * 660 307 46 14 chr4_random 9890429 9890709 -8961104 - MER87 LTR ERV1 -24 517 229 23 0 0 0 chr4_random 9890711 9890734 -8961079 + AT_rich Low_complexity Low_complexity 1 23 0 7564 214 26 21 chr4_random 9890748 9892705 -8959108 - L1M LINE L1 -859 5287 3344 1421 112 0 36 chr4_random 9892705 9892928 -8958885 + MLT2A1 LTR ERVL 1 215 -229 547 190 30 0 chr4_random 9893038 9893138 -8958675 + MLT1B LTR MaLR 288 390 0 258 239 70 14 chr4_random 9893139 9893210 -8958603 + MER67D LTR ERV1 440 514 0 426 260 60 47 chr4_random 9893653 9893780 -8958033 - MER45 DNA AcHobo -781 172 41 1860 241 48 43 chr4_random 9893780 9894389 -8957424 + LTR9 LTR ERV1 1 612 0 426 260 60 47 chr4_random 9894389 9894411 -8957402 - MER45 DNA AcHobo -912 41 21 821 193 40 0 chr4_random 9894551 9894701 -8957112 + FAM SINE Alu 12 167 -18 617 310 37 26 chr4_random 9894738 9895006 -8956807 - L2 LINE L2 -742 2572 2302 397 316 38 17 chr4_random 9895128 9895499 -8956314 - L1M LINE L1 -746 5416 5038 328 303 68 30 chr4_random 9895772 9895904 -8955909 - L2 LINE L2 -2 3311 3175 252 345 62 36 chr4_random 9895934 9896128 -8955685 + L2 LINE L2 3014 3212 -101 1703 264 15 58 chr4_random 9896366 9896904 -8954909 - MLT2B1 LTR ERVL -4 516 2 26 30 0 0 chr4_random 9897969 9898002 -8953811 + AT_rich Low_complexity Low_complexity 1 33 0 184 314 57 0 chr4_random 9898063 9898133 -8953680 - MER5B DNA MER1_type 0 178 105 2860 124 26 13 chr4_random 9898210 9898668 -8953145 + MER4C LTR ERV1 2 465 0 8000 247 17 18 chr4_random 9898958 9901466 -8950347 + L1PA12 LINE L1 1184 4501 -3083 549 288 11 54 chr4_random 9901613 9901797 -8950016 - MER58A DNA MER1_type -28 196 21 240 265 0 36 chr4_random 9901907 9901990 -8949823 + CT-rich Low_complexity Low_complexity 1 80 0 230 252 76 8 chr4_random 9902438 9902557 -8949256 + L1MC/D LINE L1 5784 5910 -1898 240 194 0 0 chr4_random 9902569 9902577 -8949236 + (TA)n Simple_repeat Simple_repeat 2 9 -59 1457 228 3 0 chr4_random 9902577 9902866 -8948947 + AluJo SINE Alu 1 290 -22 240 194 0 0 chr4_random 9902866 9902924 -8948889 + (TA)n Simple_repeat Simple_repeat 8 68 0 903 78 16 0 chr4_random 9903119 9903248 -8948565 - MER11B LTR ERVK -96 1140 1010 27 49 0 0 chr4_random 9903871 9903912 -8947901 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr4_random 9904192 9904217 -8947596 + AT_rich Low_complexity Low_complexity 1 25 0 1519 17 0 0 chr4_random 9904943 9905120 -8946693 - L1PA4 LINE L1 -167 5988 5812 1305 19 38 0 chr4_random 9905120 9905277 -8946536 + L1PA4 LINE L1 5987 6152 -3 42844 31 21 1 chr4_random 9906914 9912944 -8938869 - L1HS LINE L1 0 6155 4 1757 322 66 20 chr4_random 9913452 9914288 -8937525 + L2 LINE L2 1812 2685 -629 233 283 33 22 chr4_random 9914317 9914409 -8937404 + L1MB7 LINE L1 4740 4832 -1314 6062 157 22 4 chr4_random 9914444 9915757 -8936056 - L1MA3 LINE L1 -1 6304 4970 2998 230 62 34 chr4_random 9915755 9915935 -8935878 + L1MB7 LINE L1 4939 5113 -1071 * 180 0 0 0 chr4_random 9915935 9915955 -8935858 + (CAAA)n Simple_repeat Simple_repeat 4 23 0 2998 230 62 34 chr4_random 9915955 9916975 -8934838 + L1MB7 LINE L1 5113 6177 -7 21 71 0 0 chr4_random 9917054 9917096 -8934717 + AT_rich Low_complexity Low_complexity 1 42 0 33 56 0 0 chr4_random 9917713 9917767 -8934046 + AT_rich Low_complexity Low_complexity 1 54 0 336 320 39 0 chr4_random 9918229 9918357 -8933456 + LTR16B LTR ERVL 191 323 -141 22 0 0 0 chr4_random 9919423 9919445 -8932368 + AT_rich Low_complexity Low_complexity 1 22 0 238 103 0 26 chr4_random 9919546 9919585 -8932228 + MLT2A2 LTR ERVL 416 453 0 18464 196 29 32 chr4_random 9919586 9921304 -8930509 - L1 LINE L1 -2799 4766 3044 2025 120 3 10 chr4_random 9921304 9921633 -8930180 - AluSx SINE Alu 0 312 1 18464 196 29 32 chr4_random 9921633 9924685 -8927128 - L1 LINE L1 -4521 3044 12 1241 27 0 0 chr4_random 9924773 9924921 -8926892 - L1PA5 LINE L1 -8 6146 5999 591 245 0 14 chr4_random 9925027 9925170 -8926643 - L1MC1 LINE L1 -223 6110 5970 2122 169 52 2 chr4_random 9925308 9925716 -8926097 + MSTA LTR MaLR 1 428 0 446 272 64 5 chr4_random 9925814 9926016 -8925797 + L1ME4a LINE L1 5692 5905 -216 22 0 0 0 chr4_random 9926101 9926123 -8925690 + AT_rich Low_complexity Low_complexity 1 22 0 1274 242 67 42 chr4_random 9926403 9926854 -8924959 - MLT1C LTR MaLR 0 467 6 275 325 80 43 chr4_random 9926909 9927097 -8924716 + L2 LINE L2 2965 3159 -154 411 292 92 29 chr4_random 9927244 9927688 -8924125 - L1ME3A LINE L1 -208 5962 5483 21 57 0 0 chr4_random 9928123 9928158 -8923655 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr4_random 9929356 9929391 -8922422 + (TG)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr4_random 9929881 9929913 -8921900 + AT_rich Low_complexity Low_complexity 1 32 0 2301 78 20 0 chr4_random 9929979 9930408 -8921405 - L1PA7 LINE L1 -585 5569 5135 4354 67 9 0 chr4_random 9930408 9930973 -8920840 + L1PA7 LINE L1 5579 6151 -3 2018 220 77 10 chr4_random 9931049 9931572 -8920241 - Tigger6a DNA MER2_type -230 853 296 475 341 83 40 chr4_random 9932076 9932557 -8919256 + LTR33 LTR ERVL 20 521 0 222 298 73 24 chr4_random 9932564 9932688 -8919125 - MIR SINE MIR -18 244 115 716 212 32 26 chr4_random 9932693 9932882 -8918931 + MLT1B LTR MaLR 18 207 -183 234 263 30 91 chr4_random 9932897 9932996 -8918817 + MER21B LTR ERV1 12 104 -759 1193 280 45 29 chr4_random 9932998 9933375 -8918438 + MER21B LTR ERV1 19 388 -475 1753 158 11 0 chr4_random 9933375 9933723 -8918090 + AluSx SINE Alu 1 351 0 1193 280 45 29 chr4_random 9933723 9934030 -8917783 + MER21B LTR ERV1 388 794 -69 1067 148 16 11 chr4_random 9934072 9934254 -8917559 + MLT1B LTR MaLR 205 387 -3 446 312 40 36 chr4_random 9934501 9934748 -8917065 - MIR SINE MIR -8 254 7 268 359 7 62 chr4_random 9935101 9935246 -8916567 + L2 LINE L2 3175 3311 -2 26 30 0 0 chr4_random 9935248 9935281 -8916532 + AT_rich Low_complexity Low_complexity 1 33 0 1440 159 41 41 chr4_random 9935747 9936062 -8915751 - MER46B DNA MER2_type -6 230 41 21 36 0 0 chr4_random 9937470 9937498 -8914315 + AT_rich Low_complexity Low_complexity 1 28 0 221 339 71 27 chr4_random 9939429 9939541 -8912272 + MIR SINE MIR 21 137 -125 211 449 0 0 chr4_random 9939539 9939666 -8912147 - MIR SINE MIR -114 148 22 * 235 382 71 0 chr4_random 9939995 9940165 -8911648 + L2 LINE L2 994 1175 -2139 185 269 135 0 chr4_random 9940563 9940615 -8911198 - MIR SINE MIR -152 110 52 1759 243 81 2 chr4_random 9940622 9941050 -8910763 + MLT2B1 LTR ERVL 1 473 -47 186 43 0 0 chr4_random 9941050 9941073 -8910740 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1759 243 81 2 chr4_random 9941073 9941126 -8910687 + MLT2B1 LTR ERVL 473 520 0 3041 145 14 257 chr4_random 9941249 9941916 -8909897 + L1P4 LINE L1 3017 3457 -2689 1740 148 37 17 chr4_random 9941916 9942213 -8909600 + MER4C LTR ERV1 2 304 -161 3041 145 14 257 chr4_random 9942213 9942808 -8909005 + L1P4 LINE L1 3457 4195 -1951 992 95 3 33 chr4_random 9942809 9943123 -8908690 + (GAAA)n Simple_repeat Simple_repeat 1 304 0 807 126 6 33 chr4_random 9943141 9943324 -8908489 + (GAAA)n Simple_repeat Simple_repeat 2 179 0 6068 154 20 9 chr4_random 9943324 9944979 -8906834 + L1P4 LINE L1 4154 5820 -348 24 0 0 0 chr4_random 9945319 9945343 -8906470 + AT_rich Low_complexity Low_complexity 1 24 0 1392 199 30 26 chr4_random 9946861 9947163 -8904650 - AluJo SINE Alu -9 303 1 903 239 60 20 chr4_random 9947651 9947920 -8903893 + MLT1F LTR MaLR 268 605 -49 1951 158 125 3 chr4_random 9948811 9949178 -8902635 + MER61C LTR ERV1 23 434 0 21 0 0 0 chr4_random 9949701 9949722 -8902091 + AT_rich Low_complexity Low_complexity 1 21 0 1244 202 150 25 chr4_random 9950262 9950703 -8901110 + LTR54B LTR ERV1 1 496 -2 1205 320 58 21 chr4_random 9951632 9952189 -8899624 + ERVL LTR ERVL 2640 3216 -2548 1418 191 57 27 chr4_random 9952664 9953049 -8898764 + MER67C LTR ERV1 5 403 -240 827 215 15 15 chr4_random 9953139 9953339 -8898474 + MLT1B LTR MaLR 4 203 -187 2088 143 0 0 chr4_random 9953446 9953808 -8898005 - AluSx SINE Alu 0 364 3 288 388 71 15 chr4_random 9953937 9954133 -8897680 - MIR SINE MIR -55 207 1 297 0 0 0 chr4_random 9954304 9954337 -8897476 + (TG)n Simple_repeat Simple_repeat 1 33 0 781 280 47 0 chr4_random 9956126 9956340 -8895473 - MER58A DNA MER1_type 0 224 1 605 119 10 0 chr4_random 9956854 9956955 -8894858 + (TCC)n Simple_repeat Simple_repeat 1 102 0 222 366 27 9 chr4_random 9957404 9957516 -8894297 - L2 LINE L2 0 3313 3200 341 328 239 11 chr4_random 9958148 9958520 -8893293 - L2 LINE L2 -1035 2279 1823 340 296 90 11 chr4_random 9958529 9958718 -8893095 + HAL1 LINE L1 9 212 -2295 584 230 115 5 chr4_random 9959160 9959376 -8892437 - MER63 DNA MER1_type -1 1060 821 2996 200 85 76 chr4_random 9959376 9960334 -8891479 + MER52A LTR ERV1 1 1041 -671 389 305 93 61 chr4_random 9960338 9960813 -8891000 + HAL1 LINE L1 1700 2189 -318 21 0 0 0 chr4_random 9961161 9961182 -8890631 + AT_rich Low_complexity Low_complexity 1 21 0 199 314 71 0 chr4_random 9962189 9962259 -8889554 - L3 LINE CR1 -1314 263 189 248 233 0 0 chr4_random 9962510 9962553 -8889260 - LTR33 LTR ERVL 0 521 479 351 113 0 0 chr4_random 9962582 9962635 -8889178 + (T)n Simple_repeat Simple_repeat 1 53 0 198 224 0 0 chr4_random 9963396 9963445 -8888368 + T-rich Low_complexity Low_complexity 1 49 0 239 350 43 29 chr4_random 9963639 9963779 -8888034 - LTR33 LTR ERVL -331 190 49 548 208 10 0 chr4_random 9964119 9964215 -8887598 + MER7A DNA MER2_type 1 95 -251 501 250 0 0 chr4_random 9964224 9964324 -8887489 + MER7A DNA MER2_type 238 337 0 32 75 0 0 chr4_random 9964336 9964403 -8887410 + AT_rich Low_complexity Low_complexity 1 67 0 35 63 0 0 chr4_random 9964676 9964739 -8887074 + AT_rich Low_complexity Low_complexity 1 63 0 1466 240 50 22 chr4_random 9965526 9965930 -8885883 + MLT1C LTR MaLR 53 467 0 430 308 82 43 chr4_random 9966212 9966540 -8885273 - L1MEc LINE L1 -4118 2278 1938 828 249 90 57 chr4_random 9967714 9968078 -8883735 + L1MC4 LINE L1 7322 7711 -331 2231 122 8 40 chr4_random 9968078 9968454 -8883359 - THE1B LTR MaLR 0 364 1 828 249 90 57 chr4_random 9968454 9968631 -8883182 + L1MC4 LINE L1 7711 7881 -161 201 217 22 0 chr4_random 9968637 9968690 -8883123 + (CATATA)n Simple_repeat Simple_repeat 1 54 0 247 246 33 0 chr4_random 9968778 9968839 -8882974 - MLT1H1 LTR MaLR -412 143 81 646 317 41 32 chr4_random 9968941 9969162 -8882651 + MIR SINE MIR 19 241 -21 38 51 0 0 chr4_random 9969284 9969343 -8882470 + AT_rich Low_complexity Low_complexity 1 59 0 24 0 0 0 chr4_random 9969843 9969867 -8881946 + AT_rich Low_complexity Low_complexity 1 24 0 201 74 0 0 chr4_random 9971866 9971893 -8879920 + (GA)n Simple_repeat Simple_repeat 2 28 0 607 181 104 0 chr4_random 9971899 9972043 -8879770 + FAM SINE Alu 1 49 0 276 294 50 34 chr4_random 9972489 9972608 -8879205 - MLT1J LTR MaLR -286 225 105 243 0 0 0 chr4_random 9972937 9972964 -8878849 + (TG)n Simple_repeat Simple_repeat 2 28 0 2447 202 43 20 chr4_random 9974259 9975192 -8876621 - L1MB5 LINE L1 -318 5856 4901 22 0 0 0 chr4_random 9975793 9975815 -8875998 + AT_rich Low_complexity Low_complexity 1 22 0 182 326 191 42 chr4_random 9976008 9976223 -8875590 + L2 LINE L2 2905 3151 -162 747 228 81 5 chr4_random 9976242 9976453 -8875360 - L1MD3 LINE L1 -16 7979 7753 11502 75 12 1 chr4_random 9976554 9978103 -8873710 - L1P LINE L1 -873 5273 3708 4336 90 17 52 chr4_random 9978103 9979276 -8872537 + MER11A LTR ERVK 1 1266 0 13170 83 13 12 chr4_random 9979276 9981166 -8870647 - L1P LINE L1 -2433 3713 1822 1014 217 81 75 chr4_random 9981174 9981617 -8870196 - L1MC3 LINE L1 -594 7191 6746 350 366 0 39 chr4_random 9981627 9981780 -8870033 + L2 LINE L2 3167 3313 0 25 0 0 0 chr4_random 9982538 9982563 -8869250 + AT_rich Low_complexity Low_complexity 1 25 0 253 329 103 13 chr4_random 9983324 9983479 -8868334 + MIR SINE MIR 22 190 -72 1882 145 3 7 chr4_random 9983640 9983946 -8867867 - AluSg SINE Alu 0 305 1 440 322 184 30 chr4_random 9984793 9985125 -8866688 + L2 LINE L2 41 423 -2891 195 343 167 20 chr4_random 9985169 9985367 -8866446 + L2 LINE L2 1953 2179 -1135 2066 133 0 3 chr4_random 9985376 9985684 -8866129 - AluSp SINE Alu -6 307 1 1518 287 76 17 chr4_random 9985706 9986483 -8865330 + L2 LINE L2 2400 3231 -82 21 36 0 0 chr4_random 9986500 9986528 -8865285 + AT_rich Low_complexity Low_complexity 1 28 0 805 306 31 34 chr4_random 9986651 9987033 -8864780 - L1ME3A LINE L1 -115 6055 5675 1714 117 52 35 chr4_random 9987997 9988287 -8863526 + AluSx SINE Alu 5 299 -13 285 315 65 0 chr4_random 9988378 9988470 -8863343 - L2 LINE L2 -4 3309 3212 534 309 67 45 chr4_random 9988506 9988820 -8862993 - MLT1H LTR MaLR 0 549 229 26 30 0 0 chr4_random 9990023 9990056 -8861757 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr4_random 9990254 9990277 -8861536 + AT_rich Low_complexity Low_complexity 1 23 0 272 130 0 43 chr4_random 9990312 9990404 -8861409 + (TAA)n Simple_repeat Simple_repeat 1 88 0 229 222 25 25 chr4_random 9991216 9991227 -8860586 - L1MA10 LINE L1 -3 6331 6321 1837 269 68 31 chr4_random 9991227 9992127 -8859686 - L1ME1 LINE L1 -5 6161 5225 1361 283 41 36 chr4_random 9992162 9992760 -8859053 - L1ME1 LINE L1 -904 5242 4639 2205 86 21 0 chr4_random 9992760 9993051 -8858762 - AluY SINE Alu -14 297 1 1361 283 41 36 chr4_random 9993051 9993117 -8858696 - L1ME1 LINE L1 -1507 4639 4575 625 307 40 22 chr4_random 9993230 9993455 -8858358 + MIR SINE MIR 4 232 -30 34 24 0 0 chr4_random 9993524 9993565 -8858248 + AT_rich Low_complexity Low_complexity 1 41 0 467 238 6 60 chr4_random 9995393 9995561 -8856252 - MER52A LTR ERV1 0 1755 1597 2444 245 109 39 chr4_random 9995603 9996404 -8855409 - LTR28 LTR ERV1 -163 857 1 205 372 21 0 chr4_random 9996954 9997048 -8854765 - MIR SINE MIR -8 254 159 324 111 0 0 chr4_random 9997072 9997126 -8854687 + (CA)n Simple_repeat Simple_repeat 2 55 0 22 0 0 0 chr4_random 9997886 9997908 -8853905 + AT_rich Low_complexity Low_complexity 1 22 0 232 94 0 0 chr4_random 9997908 9997940 -8853873 + L1PA7 LINE L1 6021 6052 -102 276 30 0 0 chr4_random 9998307 9998340 -8853473 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr4_random 9998972 9999001 -8852812 + AT_rich Low_complexity Low_complexity 1 29 0 315 291 35 0 chr4_random 9999540 9999626 -8852187 - L2 LINE L2 0 3313 3225 465 262 0 16 chr4_random 9999639 9999761 -8852052 - MLT1I LTR MaLR -13 396 277 375 325 7 33 chr4_random 10000061 10000212 -8851601 - MLT1I LTR MaLR -252 157 11 748 304 169 23 chr4_random 10000220 10000876 -8850937 - L2 LINE L2 -132 3181 2426 539 316 117 54 chr4_random 10000887 10001377 -8850436 + L2 LINE L2 2512 2970 -343 207 0 0 0 chr4_random 10001377 10001400 -8850413 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1546 202 0 14 chr4_random 10001402 10001699 -8850114 - AluJb SINE Alu -19 293 1 539 316 117 54 chr4_random 10001699 10001960 -8849853 + L2 LINE L2 2970 3313 0 326 381 9 0 chr4_random 10006215 10006320 -8845493 - L2 LINE L2 0 3313 3208 206 268 36 0 chr4_random 10006574 10006630 -8845183 - L2 LINE L2 -2 3270 3213 189 121 0 0 chr4_random 10006705 10006738 -8845075 + (A)n Simple_repeat Simple_repeat 1 33 0 257 389 41 9 chr4_random 10006914 10007135 -8844678 - L2 LINE L2 -536 2778 2551 249 294 0 0 chr4_random 10007877 10007945 -8843868 - L1MEc LINE L1 -5922 474 407 2920 296 64 45 chr4_random 10008092 10008421 -8843392 + L1MEc LINE L1 46 367 -6029 1799 179 37 0 chr4_random 10008421 10008745 -8843068 - MER1B DNA MER1_type 0 337 2 2920 296 64 45 chr4_random 10008745 10010132 -8841681 + L1MEc LINE L1 367 1794 -4602 221 245 0 0 chr4_random 10010248 10010297 -8841516 + GA-rich Low_complexity Low_complexity 4 52 0 396 0 0 0 chr4_random 10011109 10011153 -8840660 + (TA)n Simple_repeat Simple_repeat 1 44 0 2466 116 6 3 chr4_random 10011526 10011888 -8839925 + THE1B LTR MaLR 2 364 0 51 0 0 0 chr4_random 10011943 10011994 -8839819 + AT_rich Low_complexity Low_complexity 1 51 0 1184 237 52 36 chr4_random 10012607 10012975 -8838838 + MLT1A2 LTR MaLR 1 467 0 32 43 0 0 chr4_random 10013017 10013063 -8838750 + AT_rich Low_complexity Low_complexity 1 46 0 1072 207 55 60 chr4_random 10014378 10014791 -8837022 - MER39 LTR ERV1 -15 642 75 424 261 50 0 chr4_random 10014795 10014914 -8836899 - MER34 LTR ERV1 -410 132 8 25 0 0 0 chr4_random 10014940 10014965 -8836848 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr4_random 10015254 10015276 -8836537 + AT_rich Low_complexity Low_complexity 1 22 0 241 377 42 16 chr4_random 10016166 10016357 -8835456 - MIR SINE MIR -54 208 13 1549 188 0 29 chr4_random 10017574 10017882 -8833931 - AluJo SINE Alu -13 299 1 296 173 19 0 chr4_random 10018038 10018090 -8833723 - MER4B LTR ERV1 -18 592 540 269 294 15 0 chr4_random 10018095 10018163 -8833650 + L2 LINE L2 3244 3312 -1 22 0 0 0 chr4_random 10018471 10018493 -8833320 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr4_random 10019506 10019537 -8832276 + AT_rich Low_complexity Low_complexity 1 31 0 277 273 25 58 chr4_random 10020387 10020508 -8831305 - L2 LINE L2 -45 3268 3152 2437 207 16 26 chr4_random 10020661 10021153 -8830660 - ERVL LTR ERVL -3549 2215 1729 1643 148 11 11 chr4_random 10021583 10021890 -8829923 - AluSx SINE Alu 0 307 1 22 35 0 0 chr4_random 10022662 10022691 -8829122 + AT_rich Low_complexity Low_complexity 1 29 0 405 253 17 42 chr4_random 10024162 10024313 -8827500 - MLT2D LTR ERVL -193 221 76 282 288 50 0 chr4_random 10024383 10024463 -8827350 - L2 LINE L2 -16 3297 3214 229 167 17 17 chr4_random 10024865 10024925 -8826888 + (TA)n Simple_repeat Simple_repeat 2 61 0 29 0 0 0 chr4_random 10025078 10025107 -8826706 + AT_rich Low_complexity Low_complexity 1 29 0 1439 241 27 68 chr4_random 10025141 10025659 -8826154 - MLT1D LTR MaLR -3 502 6 322 242 15 0 chr4_random 10025959 10026025 -8825788 - MLT1I LTR MaLR -342 67 1 247 290 43 11 chr4_random 10027179 10027272 -8824541 + MER94 DNA DNA 19 114 -20 2243 112 3 3 chr4_random 10027289 10027602 -8824211 - AluSq SINE Alu 0 313 1 180 0 0 0 chr4_random 10028269 10028289 -8823524 + (AGTAG)n Simple_repeat Simple_repeat 5 24 0 303 93 0 0 chr4_random 10028813 10028856 -8822957 + (CA)n Simple_repeat Simple_repeat 2 44 0 533 262 16 0 chr4_random 10029040 10029185 -8822628 - MSTC LTR MaLR -215 150 1 195 69 0 0 chr4_random 10029204 10029233 -8822580 + (CAA)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr4_random 10029304 10029325 -8822488 + AT_rich Low_complexity Low_complexity 1 21 0 3464 172 5 5 chr4_random 10029417 10030235 -8821578 + L1MC/D LINE L1 4990 5808 -525 596 0 40 0 chr4_random 10030413 10030487 -8821326 + (TAAAA)n Simple_repeat Simple_repeat 4 80 0 359 236 22 0 chr4_random 10030532 10030621 -8821192 - LTR16B LTR ERVL -369 95 5 640 331 67 37 chr4_random 10030647 10031359 -8820454 - ERVL LTR ERVL -21 5389 4539 877 362 69 30 chr4_random 10031504 10032073 -8819740 - ERVL LTR ERVL -1207 4557 3937 1359 266 87 27 chr4_random 10032073 10032547 -8819266 - MLT1D LTR MaLR -3 502 1 877 362 69 30 chr4_random 10032547 10032889 -8818924 - ERVL LTR ERVL -1827 3937 3610 289 239 0 0 chr4_random 10033041 10033112 -8818701 - ERVL LTR ERVL -2809 2676 2606 935 316 58 54 chr4_random 10033213 10033770 -8818043 - ERVL LTR ERVL -2534 2462 1904 1916 118 49 3 chr4_random 10034306 10034594 -8817219 + AluSc SINE Alu 1 301 -8 285 390 7 7 chr4_random 10034610 10034751 -8817062 + L3 LINE CR1 1122 1262 -315 536 280 14 7 chr4_random 10035705 10035848 -8815965 + MIR SINE MIR 29 172 -90 330 314 14 50 chr4_random 10035853 10035993 -8815820 + MIR SINE MIR 128 262 0 180 271 21 0 chr4_random 10036161 10036209 -8815604 - MIR SINE MIR -68 140 92 27 49 0 0 chr4_random 10036651 10036692 -8815121 + AT_rich Low_complexity Low_complexity 1 41 0 384 22 0 0 chr4_random 10038024 10038069 -8813744 + (TG)n Simple_repeat Simple_repeat 2 46 0 1392 279 76 0 chr4_random 10039884 10040253 -8811560 + MLT1F LTR MaLR 10 406 -136 200 224 0 79 chr4_random 10040537 10040594 -8811219 + T-rich Low_complexity Low_complexity 4 55 -18 6154 94 13 6 chr4_random 10040594 10042365 -8809448 - L1PA11 LINE L1 -8 6166 4381 200 224 0 79 chr4_random 10042365 10042383 -8809430 + T-rich Low_complexity Low_complexity 55 73 0 320 339 67 18 chr4_random 10042411 10042576 -8809237 + MIR SINE MIR 17 189 -73 556 316 126 19 chr4_random 10042656 10043070 -8808743 + LTR16B LTR ERVL 1 458 -6 194 0 39 0 chr4_random 10045147 10045173 -8806640 + (TAGA)n Simple_repeat Simple_repeat 4 30 0 269 256 0 26 chr4_random 10045516 10045594 -8806219 + L1ME LINE L1 5590 5665 -456 299 279 90 27 chr4_random 10045705 10045816 -8805997 - L2 LINE L2 -1 3312 3195 190 316 176 0 chr4_random 10046467 10046603 -8805210 + MIR SINE MIR 103 262 0 2701 178 18 72 chr4_random 10048631 10048667 -8803146 - MLT2B3 LTR ERVL -8 546 510 279 54 0 0 chr4_random 10048667 10048704 -8803109 + (CA)n Simple_repeat Simple_repeat 2 38 0 2701 178 18 72 chr4_random 10048704 10049240 -8802573 - MLT2B3 LTR ERVL -44 510 5 382 35 18 18 chr4_random 10049435 10049492 -8802321 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 193 242 16 65 chr4_random 10050267 10050329 -8801484 - L2 LINE L2 0 3272 3214 455 32 0 16 chr4_random 10050871 10050933 -8800880 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 21 36 0 0 chr4_random 10051588 10051616 -8800197 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr4_random 10051706 10051745 -8800068 + AT_rich Low_complexity Low_complexity 1 39 0 33 25 0 0 chr4_random 10051984 10052024 -8799789 + AT_rich Low_complexity Low_complexity 1 40 0 203 297 14 0 chr4_random 10052166 10052240 -8799573 - MIR SINE MIR -106 156 82 23 0 0 0 chr4_random 10053543 10053566 -8798247 + AT_rich Low_complexity Low_complexity 1 23 0 230 336 95 37 chr4_random 10054202 10054443 -8797370 + MIR SINE MIR 8 262 0 386 197 56 0 chr4_random 10054739 10054810 -8797003 - Tigger1 DNA MER2_type 0 2418 2344 2650 144 5 5 chr4_random 10054812 10055249 -8796564 - Tigger1 DNA MER2_type -185 2233 1797 939 324 26 75 chr4_random 10055261 10055878 -8795935 + L1PA16 LINE L1 788 1374 -6200 1543 297 15 9 chr4_random 10056354 10056893 -8794920 + L1PA16 LINE L1 2185 2726 -4855 571 258 148 16 chr4_random 10057571 10057881 -8793932 - L1ME4a LINE L1 -152 5969 5619 2049 138 3 0 chr4_random 10057881 10058179 -8793634 + AluSq SINE Alu 1 299 -14 3207 204 17 21 chr4_random 10058179 10058991 -8792822 - L1 LINE L1 -2408 3738 2930 22 35 0 0 chr4_random 10059716 10059745 -8792068 + AT_rich Low_complexity Low_complexity 1 29 0 43961 40 2 4 chr4_random 10059977 10065773 -8786040 + L1P1 LINE L1 1 5784 -371 1056 70 5 38 chr4_random 10065873 10065886 -8785927 + (GAAA)n Simple_repeat Simple_repeat 1 192 0 1056 70 5 38 chr4_random 10065886 10066072 -8785741 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 10735 234 57 19 chr4_random 10066131 10069299 -8782514 + L1PA16 LINE L1 3140 6515 -1089 2034 127 3 0 chr4_random 10069299 10069624 -8782189 + AluSx SINE Alu 1 326 0 10735 234 57 19 chr4_random 10069624 10070748 -8781065 + L1PA16 LINE L1 6515 7595 -9 2101 149 171 48 chr4_random 10070762 10070809 -8781004 - Tigger1 DNA MER2_type -614 1804 1764 1783 163 4 0 chr4_random 10070809 10071106 -8780707 + AluSx SINE Alu 4 301 0 2101 149 171 48 chr4_random 10071106 10071513 -8780300 - Tigger1 DNA MER2_type -654 1764 1293 8925 52 2 3 chr4_random 10071513 10072651 -8779162 - L1P LINE L1 -1195 4951 3816 4256 148 3 6 chr4_random 10072651 10073338 -8778475 - Tigger1 DNA MER2_type -1126 1292 608 1395 199 4 18 chr4_random 10073343 10073620 -8778193 - AluJb SINE Alu -22 290 18 3538 167 31 2 chr4_random 10073620 10074224 -8777589 - Tigger1 DNA MER2_type -1796 622 1 21 0 0 0 chr4_random 10075225 10075246 -8776567 + AT_rich Low_complexity Low_complexity 1 21 0 3057 130 30 6 chr4_random 10075264 10075763 -8776050 + MER9 LTR ERVK 1 511 0 900 187 10 67 chr4_random 10076566 10076775 -8775038 + MER20 DNA MER1_type 23 219 0 23 0 0 0 chr4_random 10077527 10077550 -8774263 + AT_rich Low_complexity Low_complexity 1 23 0 187 364 48 53 chr4_random 10077573 10077760 -8774053 + L2 LINE L2 2721 2906 -408 263 264 127 38 chr4_random 10078309 10078749 -8773064 - L1MC4 LINE L1 -189 7853 7273 503 202 8 16 chr4_random 10078933 10079057 -8772756 - L1PB4 LINE L1 -2 6154 6032 344 333 35 14 chr4_random 10080044 10080185 -8771628 - MIR SINE MIR -105 157 14 191 340 10 29 chr4_random 10080934 10081037 -8770776 + MIR SINE MIR 52 152 -110 187 109 0 43 chr4_random 10081246 10081292 -8770521 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 23 122 0 0 chr4_random 10081430 10081586 -8770227 + AT_rich Low_complexity Low_complexity 1 156 0 213 304 98 27 chr4_random 10081733 10081845 -8769968 - MIR SINE MIR -2 260 141 393 109 0 0 chr4_random 10082180 10082235 -8769578 + Alu SINE Alu 240 294 -6 764 273 77 13 chr4_random 10082287 10082592 -8769221 + MLT1E1 LTR MaLR 304 654 0 829 183 26 0 chr4_random 10082761 10082914 -8768899 + LTR26 LTR ERV1 1 157 -446 3904 180 145 85 chr4_random 10082916 10084081 -8767732 + MER52A LTR ERV1 1 1324 -431 1346 144 193 33 chr4_random 10084111 10084172 -8767641 + LTR26 LTR ERV1 291 341 -262 1799 147 47 0 chr4_random 10084172 10084451 -8767362 + AluSg SINE Alu 1 292 -18 288 0 0 0 chr4_random 10084451 10084483 -8767330 + (TA)n Simple_repeat Simple_repeat 2 33 0 1346 144 193 33 chr4_random 10084483 10084690 -8767123 + LTR26 LTR ERV1 340 603 0 500 297 21 47 chr4_random 10084771 10084963 -8766850 - L1MCb LINE L1 -5653 392 206 2532 177 41 51 chr4_random 10085100 10085728 -8766085 - L1MC3 LINE L1 -9 7776 7155 2567 223 75 13 chr4_random 10085728 10086660 -8765153 + L1MB7 LINE L1 5108 6174 -10 311 366 97 16 chr4_random 10086722 10086908 -8764905 - MIR SINE MIR -15 247 47 1733 125 73 0 chr4_random 10086997 10087245 -8764568 + AluSq SINE Alu 1 266 -47 34 42 0 0 chr4_random 10087587 10087635 -8764178 + AT_rich Low_complexity Low_complexity 1 48 0 1068 15 0 0 chr4_random 10087731 10087861 -8763952 - L1PA3 LINE L1 -3710 2436 2307 24072 36 5 0 chr4_random 10087865 10091581 -8760232 + L1PA3 LINE L1 2436 6155 0 183 80 0 0 chr4_random 10092043 10092068 -8759745 + (TATG)n Simple_repeat Simple_repeat 4 28 0 1477 216 166 97 chr4_random 10092131 10092581 -8759232 + MLT1E1 LTR MaLR 3 508 -146 1348 185 0 71 chr4_random 10092581 10093082 -8758731 - AluJb SINE Alu 0 478 1 1477 216 166 97 chr4_random 10093082 10093238 -8758575 + MLT1E1 LTR MaLR 508 652 -2 2122 93 11 0 chr4_random 10095611 10095920 -8755893 - AluSc SINE Alu 0 312 1 1068 37 0 0 chr4_random 10096127 10096263 -8755550 - L1P LINE L1 -824 5322 5187 5318 30 5 0 chr4_random 10096263 10096921 -8754892 + L1PA4 LINE L1 5507 6171 0 499 333 104 32 chr4_random 10097053 10097524 -8754289 + LTR33 LTR ERVL 10 514 -7 23 0 0 0 chr4_random 10097999 10098022 -8753791 + AT_rich Low_complexity Low_complexity 1 23 0 715 263 113 45 chr4_random 10100663 10101089 -8750724 + HsTC2 DNA Tc2 1270 1900 0 458 277 85 11 chr4_random 10101134 10101311 -8750502 - LTR16A LTR ERVL -2 448 259 266 314 31 57 chr4_random 10101442 10101601 -8750212 - ERVL LTR ERVL -866 4898 4744 270 209 23 0 chr4_random 10101613 10101742 -8750071 + (TA)n Simple_repeat Simple_repeat 2 133 0 910 346 48 26 chr4_random 10102169 10102679 -8749134 - ERVL LTR ERVL -3143 1853 1258 1472 213 7 0 chr4_random 10102679 10102984 -8748829 - AluJb SINE Alu -5 307 1 910 346 48 26 chr4_random 10102984 10103201 -8748612 - ERVL LTR ERVL -3738 1258 1047 681 319 53 41 chr4_random 10103739 10104081 -8747732 - ERVL LTR ERVL -4574 422 77 453 314 65 62 chr4_random 10104170 10104479 -8747334 - LTR16A LTR ERVL -20 430 121 1263 46 0 0 chr4_random 10105127 10105280 -8746533 - AluY SINE Alu -2 309 157 233 306 14 14 chr4_random 10105356 10105428 -8746385 - L2 LINE L2 -5 3308 3237 305 231 0 11 chr4_random 10106105 10106196 -8745617 + CT-rich Low_complexity Low_complexity 2 91 0 265 361 24 12 chr4_random 10106425 10106594 -8745219 + L2 LINE L2 733 903 -2411 24 67 0 0 chr4_random 10106928 10106973 -8744840 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr4_random 10107065 10107089 -8744724 + AT_rich Low_complexity Low_complexity 1 24 0 561 238 109 30 chr4_random 10107715 10107917 -8743896 - MER20 DNA MER1_type -1 218 1 276 130 0 0 chr4_random 10108155 10108201 -8743612 + (TCCCC)n Simple_repeat Simple_repeat 4 49 0 420 306 84 68 chr4_random 10108785 10109208 -8742605 - MLT1H1 LTR MaLR -6 549 130 2151 46 0 0 chr4_random 10109435 10109698 -8742115 + L1PA3 LINE L1 5893 6155 0 251 62 125 94 chr4_random 10113218 10113282 -8738531 - MLT2B3 LTR ERVL 0 520 455 2404 218 18 15 chr4_random 10113308 10113842 -8737971 - MLT2B3 LTR ERVL -35 508 1 531 345 47 13 chr4_random 10113889 10114124 -8737689 + MIR SINE MIR 1 243 -19 294 95 0 0 chr4_random 10114577 10114619 -8737194 + (TA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr4_random 10114671 10114693 -8737120 + AT_rich Low_complexity Low_complexity 1 22 0 241 406 33 17 chr4_random 10118100 10118280 -8733533 + L2 LINE L2 3104 3286 -27 21 0 0 0 chr4_random 10120076 10120097 -8731716 + AT_rich Low_complexity Low_complexity 1 21 0 448 288 79 45 chr4_random 10120363 10121166 -8730647 - HAL1 LINE L1 -90 2417 1541 193 33 67 67 chr4_random 10121190 10121250 -8730563 + (TTAAA)n Simple_repeat Simple_repeat 1 60 0 320 302 75 50 chr4_random 10121276 10121435 -8730378 - HAL1 LINE L1 -1019 1488 1326 44 20 0 0 chr4_random 10121465 10121516 -8730297 + AT_rich Low_complexity Low_complexity 1 51 0 476 326 83 43 chr4_random 10121783 10122157 -8729656 - HAL1 LINE L1 -1610 897 509 397 340 110 39 chr4_random 10122322 10122539 -8729274 + L2 LINE L2 2978 3225 -88 2401 74 0 3 chr4_random 10122539 10122850 -8728963 + AluY SINE Alu 1 310 -1 397 340 110 39 chr4_random 10122850 10122941 -8728872 + L2 LINE L2 3225 3308 -5 254 342 9 36 chr4_random 10123049 10123160 -8728653 - L2 LINE L2 0 3313 3206 203 403 3 9 chr4_random 10123362 10123538 -8728275 - L2 LINE L2 -391 2922 2750 180 204 23 23 chr4_random 10123539 10123583 -8728230 + L2 LINE L2 2394 2437 -877 * 266 221 116 53 chr4_random 10123581 10123676 -8728137 + L2 LINE L2 3213 3313 0 312 324 188 24 chr4_random 10123832 10124045 -8727768 + MIR SINE MIR 3 250 -12 26 0 0 0 chr4_random 10125701 10125727 -8726086 + AT_rich Low_complexity Low_complexity 1 26 0 1425 203 4 0 chr4_random 10125797 10126053 -8725760 - AluJb SINE Alu -22 290 34 2086 105 0 0 chr4_random 10126305 10126581 -8725232 - AluSq SINE Alu -35 278 3 21 36 0 0 chr4_random 10126833 10126861 -8724952 + AT_rich Low_complexity Low_complexity 1 28 0 467 207 0 0 chr4_random 10127119 10127201 -8724612 - AluJ/FLAM SINE Alu -225 87 6 5483 231 18 4 chr4_random 10127204 10128522 -8723291 + L1PB4 LINE L1 3239 4574 -1572 326 129 40 139 chr4_random 10128546 10128647 -8723166 - L1PA13 LINE L1 -1 6162 6072 * 16855 212 43 19 chr4_random 10128625 10132299 -8719514 - L1PA13 LINE L1 -38 6776 2678 7854 65 10 3 chr4_random 10132299 10133299 -8718514 - LTR13 LTR ERVK 0 1007 1 16855 212 43 19 chr4_random 10133299 10136042 -8715771 - L1PA13 LINE L1 -4136 2678 2 4230 157 24 41 chr4_random 10136049 10136896 -8714917 + L1PB4 LINE L1 5340 6300 0 361 302 0 119 chr4_random 10138283 10138442 -8713371 - MIR SINE MIR -92 170 31 223 344 52 19 chr4_random 10138528 10138682 -8713131 + MIR SINE MIR 53 211 -51 205 207 17 0 chr4_random 10138741 10138799 -8713014 + (TA)n Simple_repeat Simple_repeat 1 59 0 4441 212 26 10 chr4_random 10138971 10140184 -8711629 - L1M3 LINE L1 -612 5556 4330 1252 170 52 125 chr4_random 10140184 10140585 -8711228 + MER83C LTR ERV1 1 372 -1 1386 226 5 71 chr4_random 10140597 10141036 -8710777 - L1M3 LINE L1 -1823 4323 3914 2803 155 12 14 chr4_random 10141086 10141602 -8710211 + L1MB1 LINE L1 5604 6118 -50 1954 98 29 44 chr4_random 10141613 10141929 -8709884 + AluY SINE Alu 1 311 0 207 100 0 0 chr4_random 10142004 10142034 -8709779 + (A)n Simple_repeat Simple_repeat 1 30 0 25 31 0 0 chr4_random 10144370 10144402 -8707411 + AT_rich Low_complexity Low_complexity 1 32 0 212 308 26 8 chr4_random 10144499 10144616 -8707197 + CT-rich Low_complexity Low_complexity 3 121 0 1964 130 31 3 chr4_random 10144888 10145180 -8706633 + AluSx SINE Alu 1 300 -12 221 258 65 0 chr4_random 10146170 10146232 -8705581 - MIR SINE MIR -94 168 103 23 33 0 0 chr4_random 10146908 10146938 -8704875 + AT_rich Low_complexity Low_complexity 1 30 0 325 217 0 0 chr4_random 10147420 10147480 -8704333 - MIR SINE MIR -108 154 95 24 0 0 0 chr4_random 10147559 10147583 -8704230 + AT_rich Low_complexity Low_complexity 1 24 0 2973 273 65 55 chr4_random 10148121 10148278 -8703535 - L1MC4 LINE L1 -4 8038 7884 1337 285 53 28 chr4_random 10148278 10148783 -8703030 - LTR40a LTR ERVL 0 519 2 2973 273 65 55 chr4_random 10148783 10150188 -8701625 - L1MC4 LINE L1 -158 7884 6460 390 42 0 0 chr4_random 10150841 10150889 -8700924 + (CA)n Simple_repeat Simple_repeat 2 49 0 794 233 106 22 chr4_random 10151654 10152044 -8699769 - HERVL40 LTR ERVL -1850 3680 3228 510 260 8 8 chr4_random 10152100 10152223 -8699590 - HERVL40 LTR ERVL -2455 3075 2953 434 298 36 141 chr4_random 10155187 10155654 -8696159 - L2 LINE L2 -9 3263 2846 2298 94 0 3 chr4_random 10155702 10156010 -8695803 - AluY SINE Alu -4 307 1 252 59 0 0 chr4_random 10156446 10156480 -8695333 + (TC)n Simple_repeat Simple_repeat 1 34 0 242 241 17 0 chr4_random 10156574 10156632 -8695181 - MLT1G LTR MaLR -334 256 198 290 302 114 39 chr4_random 10157159 10157467 -8694346 + L1MC4 LINE L1 6827 7157 -885 286 331 31 0 chr4_random 10157634 10157761 -8694052 + L1MC4 LINE L1 7255 7385 -657 338 287 21 61 chr4_random 10157781 10157978 -8693835 + L1MCc LINE L1 33 567 -5855 1632 188 18 75 chr4_random 10158044 10158444 -8693369 + MLT1B LTR MaLR 1 377 -13 228 385 0 0 chr4_random 10158448 10158544 -8693269 + L1MCc LINE L1 840 935 -6006 676 271 59 26 chr4_random 10158971 10159277 -8692536 + L1MCc LINE L1 1117 1432 -4991 1213 266 109 45 chr4_random 10159318 10160579 -8691234 + L1MCc LINE L1 1418 2924 -4198 438 136 148 12 chr4_random 10160613 10160694 -8691119 + L1M4 LINE L1 5562 5653 -521 1045 266 44 63 chr4_random 10160800 10161009 -8690804 + LTR52 LTR ERVL 1 199 -222 240 35 0 0 chr4_random 10161009 10161038 -8690775 + (CA)n Simple_repeat Simple_repeat 2 30 0 1045 266 44 63 chr4_random 10161038 10161257 -8690556 + LTR52 LTR ERVL 199 421 0 2114 215 118 76 chr4_random 10161260 10162039 -8689774 + L1MD3 LINE L1 6289 7034 -948 351 44 0 0 chr4_random 10162039 10162084 -8689729 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 0 0 0 chr4_random 10162084 10162107 -8689706 + (GA)n Simple_repeat Simple_repeat 2 24 0 396 161 115 0 chr4_random 10162111 10162198 -8689615 + MLT1F1 LTR MaLR 38 134 -433 2114 215 118 76 chr4_random 10162198 10162728 -8689085 + L1MD3 LINE L1 7036 7970 -12 233 225 14 28 chr4_random 10162729 10162800 -8689013 - MER47A DNA MER2_type -3 363 294 928 225 97 78 chr4_random 10163104 10163546 -8688267 - MLT1C LTR MaLR 0 467 1 277 258 93 69 chr4_random 10163571 10163862 -8687951 + L1MC4 LINE L1 7622 7919 -123 2240 75 3 3 chr4_random 10163951 10164245 -8687568 - AluY SINE Alu -17 294 1 24 0 0 0 chr4_random 10164274 10164298 -8687515 + AT_rich Low_complexity Low_complexity 1 24 0 7311 182 45 11 chr4_random 10164385 10165769 -8686044 - Tigger2 DNA MER2_type -2 2716 1286 7161 189 16 12 chr4_random 10165764 10167285 -8684528 - Tigger2 DNA MER2_type -1388 1330 1 * 290 353 20 60 chr4_random 10168568 10168817 -8682996 + LTR16A LTR ERVL 212 450 0 613 269 40 31 chr4_random 10169458 10169681 -8682132 + L1ME LINE L1 51 275 -6121 2499 261 82 50 chr4_random 10169683 10171117 -8680696 + L1ME LINE L1 3937 5416 -799 11733 227 45 20 chr4_random 10171124 10172237 -8679576 + L1MA4A LINE L1 572 1655 -5350 306 185 0 0 chr4_random 10172237 10172291 -8679522 + Alu SINE Alu 243 296 -4 11733 227 45 20 chr4_random 10172291 10176709 -8675104 + L1MA4A LINE L1 1655 6300 -705 1580 175 92 21 chr4_random 10176729 10177067 -8674746 - MSTA LTR MaLR -63 365 4 2394 147 14 16 chr4_random 10177067 10177504 -8674309 + L1MA4A LINE L1 6566 7001 -4 1566 251 28 24 chr4_random 10177509 10177971 -8673842 + L1ME LINE L1 5394 5857 -378 220 309 0 12 chr4_random 10178173 10178254 -8673559 + (TTCA)n Simple_repeat Simple_repeat 4 83 0 232 133 22 0 chr4_random 10178257 10178302 -8673511 - MLT2B3 LTR ERVL 0 515 470 232 113 75 0 chr4_random 10178302 10178380 -8673433 + (TA)n Simple_repeat Simple_repeat 1 83 0 975 267 77 79 chr4_random 10178382 10178902 -8672911 - MLT2B3 LTR ERVL -35 519 1 9375 246 35 42 chr4_random 10178937 10181232 -8670581 - ERVL-B3 LTR ERVL -26 5738 3426 226 114 0 0 chr4_random 10181232 10181267 -8670546 + MADE1 DNA Mariner 46 80 0 9375 246 35 42 chr4_random 10181267 10181457 -8670356 - ERVL-B3 LTR ERVL -2338 3426 3236 1592 227 56 17 chr4_random 10231591 10232000 -8619813 + MER76 LTR ERV 43 467 -221 317 264 40 64 chr4_random 10232052 10232177 -8619636 + MER76 LTR ERV 563 684 -4 1518 189 0 28 chr4_random 10232331 10232622 -8619191 + AluJo SINE Alu 22 304 -8 1146 143 0 0 chr4_random 10232841 10233002 -8618811 + AluSg/x SINE Alu 136 296 -16 2277 61 0 0 chr4_random 10233004 10233283 -8618530 + AluY SINE Alu 1 279 -32 1752 167 38 30 chr4_random 10233778 10234150 -8617663 + THE1C LTR MaLR 1 375 0 1680 166 0 57 chr4_random 10234411 10234725 -8617088 + AluSq SINE Alu 1 296 -17 337 365 52 5 chr4_random 10234764 10234956 -8616857 - MIR SINE MIR -32 230 30 412 275 66 33 chr4_random 10235273 10235546 -8616267 - L1MC4 LINE L1 -41 8001 7720 220 299 0 0 chr4_random 10236486 10236583 -8615230 + (TA)n Simple_repeat Simple_repeat 2 98 0 2101 63 41 66 chr4_random 10236601 10236920 -8614893 - AluY SINE Alu 0 311 1 1590 166 23 99 chr4_random 10236920 10237305 -8614508 - MER47A DNA MER2_type -5 361 6 281 327 64 6 chr4_random 10237416 10237572 -8614241 - MIR SINE MIR -48 214 50 1879 231 69 16 chr4_random 10238052 10238671 -8613142 + MER50 LTR ERV1 12 732 -2 25 40 0 20 chr4_random 10238934 10238965 -8612848 + AT_rich Low_complexity Low_complexity 1 32 -17 2157 144 0 16 chr4_random 10238965 10239341 -8612472 - L1PB1 LINE L1 0 6151 5782 25 40 0 20 chr4_random 10239341 10239359 -8612454 + AT_rich Low_complexity Low_complexity 32 49 0 288 170 0 0 chr4_random 10239386 10239439 -8612374 + L1 LINE L1 5192 5244 -902 198 71 0 0 chr4_random 10239899 10239927 -8611886 + (CAT)n Simple_repeat Simple_repeat 3 30 0 2139 101 11 0 chr4_random 10241724 10242010 -8609803 - AluSx SINE Alu -8 304 16 1538 155 39 11 chr4_random 10242070 10242354 -8609459 - AluSx SINE Alu -20 292 1 21 36 0 0 chr4_random 10242417 10242445 -8609368 + AT_rich Low_complexity Low_complexity 1 28 0 266 277 62 9 chr4_random 10242466 10242578 -8609235 - MIR SINE MIR -70 192 75 2072 91 28 0 chr4_random 10243078 10243364 -8608449 - AluY SINE Alu -17 294 1 235 202 25 34 chr4_random 10244333 10244452 -8607361 + (TATAA)n Simple_repeat Simple_repeat 4 121 0 21 36 0 0 chr4_random 10244592 10244620 -8607193 + AT_rich Low_complexity Low_complexity 1 28 0 2117 154 38 35 chr4_random 10244868 10245263 -8606550 - MER61B LTR ERV1 -29 396 1 240 261 79 42 chr4_random 10245361 10245602 -8606211 - L1MEc LINE L1 -4165 2231 1982 369 0 0 0 chr4_random 10246348 10246389 -8605424 + (TA)n Simple_repeat Simple_repeat 1 41 0 1673 191 0 3 chr4_random 10246907 10247200 -8604613 - AluJo SINE Alu -11 301 10 209 125 0 25 chr4_random 10247939 10247979 -8603834 + (TAA)n Simple_repeat Simple_repeat 2 40 0 572 275 57 47 chr4_random 10249851 10250062 -8601751 + MER58A DNA MER1_type 1 213 -11 2361 127 19 3 chr4_random 10252306 10252675 -8599138 + THE1C LTR MaLR 1 375 0 1362 213 23 68 chr4_random 10253946 10254111 -8597702 + MSTD LTR MaLR 4 175 -221 20335 36 4 7 chr4_random 10254111 10257396 -8594417 + L1PA3 LINE L1 2872 6155 0 1362 213 23 68 chr4_random 10257396 10257629 -8594184 + MSTD LTR MaLR 175 384 -12 463 121 60 12 chr4_random 10257729 10257812 -8594001 + MSTD LTR MaLR 342 428 0 267 285 94 38 chr4_random 10257995 10258262 -8593551 + L1M4 LINE L1 4400 4681 -1465 33 85 0 0 chr4_random 10258744 10258826 -8592987 + AT_rich Low_complexity Low_complexity 1 82 0 4046 27 0 0 chr4_random 10259834 10260312 -8591501 - L1PA3 LINE L1 0 6155 5678 3004 26 0 0 chr4_random 10260312 10260663 -8591150 + L1PA3 LINE L1 5304 5654 -501 1885 144 0 0 chr4_random 10261611 10261930 -8589883 - AluSx SINE Alu 0 319 1 2472 108 14 6 chr4_random 10262752 10263113 -8588700 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr4_random 10264878 10264907 -8586906 + AT_rich Low_complexity Low_complexity 1 29 0 186 93 0 56 chr4_random 10265163 10265217 -8586596 + (TA)n Simple_repeat Simple_repeat 1 51 0 32 0 0 0 chr4_random 10265483 10265515 -8586298 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr4_random 10265758 10265779 -8586034 + AT_rich Low_complexity Low_complexity 1 21 0 280 143 26 26 chr4_random 10265933 10266010 -8585803 + T-rich Low_complexity Low_complexity 2 78 0 231 36 0 0 chr4_random 10266313 10266341 -8585472 + (TG)n Simple_repeat Simple_repeat 2 29 0 264 145 105 0 chr4_random 10266382 10266458 -8585355 + (TAGA)n Simple_repeat Simple_repeat 1 84 0 268 303 92 18 chr4_random 10266599 10266827 -8584986 - L1M4 LINE L1 -1161 4985 4741 1891 109 3 82 chr4_random 10266863 10267193 -8584620 - AluSg1 SINE Alu -5 304 1 304 281 162 34 chr4_random 10267359 10267594 -8584219 - L1M4 LINE L1 -1542 4604 4340 39343 77 10 2 chr4_random 10267679 10273609 -8578204 + L1PA6 LINE L1 1 5977 -177 522 326 8 38 chr4_random 10273709 10273973 -8577840 + L1MEc LINE L1 1598 1853 -4543 229 290 135 25 chr4_random 10274241 10274486 -8577327 + L1MEc LINE L1 1844 2115 -4281 1837 114 8 0 chr4_random 10274571 10274835 -8576978 + AluSq SINE Alu 1 266 -47 2268 171 30 13 chr4_random 10274844 10275313 -8576500 + L1MA4 LINE L1 5819 6295 -5 440 238 122 0 chr4_random 10275327 10275474 -8576339 + L1MB7 LINE L1 4985 5149 -997 18555 29 0 0 chr4_random 10275480 10277712 -8574101 - L1PA2 LINE L1 -1754 4392 2161 8325 30 0 0 chr4_random 10277713 10279478 -8572335 + L1PA2 LINE L1 4381 6150 -5 3798 224 28 4 chr4_random 10279522 10280506 -8571307 + L1MB7 LINE L1 5171 6177 -7 22 0 0 0 chr4_random 10280506 10280528 -8571285 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr4_random 10280582 10280604 -8571209 + AT_rich Low_complexity Low_complexity 1 22 0 368 288 22 36 chr4_random 10282917 10283056 -8568757 + MIR SINE MIR 77 213 -49 266 319 42 17 chr4_random 10284015 10284134 -8567679 - L2 LINE L2 -2 3311 3190 1387 287 31 31 chr4_random 10284470 10284916 -8566897 - LTR16C LTR ERVL -2 489 44 408 278 61 61 chr4_random 10285142 10285354 -8566459 + L2 LINE L2 3102 3313 0 248 54 54 18 chr4_random 10286127 10286183 -8565630 + (TA)n Simple_repeat Simple_repeat 2 59 0 330 311 100 43 chr4_random 10286587 10286867 -8564946 + L2 LINE L2 2297 2592 -722 23 0 0 0 chr4_random 10287535 10287558 -8564255 + AT_rich Low_complexity Low_complexity 1 23 0 2246 57 0 0 chr4_random 10287559 10287890 -8563923 + AluY SINE Alu 1 331 0 22 35 0 0 chr4_random 10287946 10287975 -8563838 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr4_random 10288972 10288997 -8562816 + AT_rich Low_complexity Low_complexity 1 25 0 1399 183 84 0 chr4_random 10289766 10290029 -8561784 + AluJb SINE Alu 6 290 -22 21 0 0 0 chr4_random 10290581 10290602 -8561211 + AT_rich Low_complexity Low_complexity 1 21 0 28 48 0 0 chr4_random 10290777 10290819 -8560994 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr4_random 10291218 10291240 -8560573 + AT_rich Low_complexity Low_complexity 1 22 0 336 365 30 6 chr4_random 10291287 10291454 -8560359 - MIR SINE MIR -72 190 20 594 266 130 10 chr4_random 10291824 10292125 -8559688 - L1MEc LINE L1 -4421 1975 1639 2232 279 74 43 chr4_random 10292156 10293158 -8558655 - L1MEc LINE L1 -5235 1161 129 575 261 76 22 chr4_random 10293331 10293515 -8558298 - MER58C DNA MER1_type -15 200 7 1005 248 68 19 chr4_random 10293724 10294047 -8557766 - MER2 DNA MER2_type -2 342 4 25 75 0 0 chr4_random 10294512 10294565 -8557248 + AT_rich Low_complexity Low_complexity 1 53 0 333 306 102 0 chr4_random 10295377 10295485 -8556328 - L2 LINE L2 0 3272 3154 298 332 45 60 chr4_random 10296090 10296289 -8555524 + L2 LINE L2 226 421 -2893 247 321 46 53 chr4_random 10296382 10296513 -8555300 - MIR SINE MIR -20 242 113 444 293 7 35 chr4_random 10296525 10296701 -8555112 + MER5A DNA MER1_type 7 186 -3 29 28 0 0 chr4_random 10296767 10296803 -8555010 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr4_random 10297092 10297126 -8554687 + AT_rich Low_complexity Low_complexity 1 34 0 2508 54 0 19 chr4_random 10297198 10297515 -8554298 - AluY SINE Alu 0 311 1 500 268 96 76 chr4_random 10299795 10300097 -8551716 - MLT1I LTR MaLR -2 407 100 256 314 116 0 chr4_random 10300306 10300392 -8551421 - L2 LINE L2 -463 2851 2756 186 43 0 0 chr4_random 10300526 10300549 -8551264 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr4_random 10301060 10301082 -8550731 + AT_rich Low_complexity Low_complexity 1 22 0 198 321 62 0 chr4_random 10301408 10301489 -8550324 + L3 LINE CR1 1205 1290 -287 261 298 21 0 chr4_random 10301563 10301657 -8550156 - MLT1H LTR MaLR 0 549 454 369 295 105 19 chr4_random 10301767 10301996 -8549817 - MLT1H LTR MaLR -242 307 3 29 0 0 0 chr4_random 10303463 10303492 -8548321 + AT_rich Low_complexity Low_complexity 1 29 0 2854 149 45 21 chr4_random 10303614 10304196 -8547617 - L1MA9 LINE L1 -2 6310 5715 1216 259 47 8 chr4_random 10304202 10304562 -8547251 - L1M3e LINE L1 -6357 673 22 21 0 0 0 chr4_random 10305197 10305218 -8546595 + AT_rich Low_complexity Low_complexity 1 21 0 2005 94 6 66 chr4_random 10305314 10305633 -8546180 + AluY SINE Alu 1 300 -11 259 24 0 48 chr4_random 10305881 10305923 -8545890 + (TA)n Simple_repeat Simple_repeat 1 40 0 2241 67 0 29 chr4_random 10306517 10306831 -8544982 - AluY SINE Alu -6 305 1 281 175 0 12 chr4_random 10307301 10307381 -8544432 + GA-rich Low_complexity Low_complexity 2 80 0 709 338 21 7 chr4_random 10310047 10310328 -8541485 - LTR16B LTR ERVL -147 317 33 755 189 8 0 chr4_random 10310771 10310903 -8540910 + AluJo SINE Alu 2 134 -178 697 131 7 7 chr4_random 10311068 10311213 -8540600 + (GGAA)n Simple_repeat Simple_repeat 1 145 0 1668 247 100 0 chr4_random 10311789 10312227 -8539586 + MLT2B1 LTR ERVL 3 492 -28 312 70 0 0 chr4_random 10312227 10312270 -8539543 + (CA)n Simple_repeat Simple_repeat 2 44 0 1668 247 100 0 chr4_random 10312270 10312300 -8539513 + MLT2B1 LTR ERVL 492 518 -2 314 310 109 31 chr4_random 10313283 10313512 -8538301 - L2 LINE L2 -47 3266 3020 309 345 110 19 chr4_random 10313588 10313797 -8538016 - L2 LINE L2 -458 2856 2629 316 303 41 16 chr4_random 10314633 10314755 -8537058 - L2 LINE L2 -1 3312 3188 320 380 18 6 chr4_random 10315144 10315315 -8536498 - L2 LINE L2 -510 2804 2632 4925 145 23 9 chr4_random 10315564 10316418 -8535395 - L1PA16 LINE L1 -9 6157 5292 461 296 118 31 chr4_random 10317047 10317368 -8534445 + L1ME4a LINE L1 5564 5912 -209 198 0 0 0 chr4_random 10318465 10318487 -8533326 + (T)n Simple_repeat Simple_repeat 1 22 0 742 278 18 24 chr4_random 10318855 10319186 -8532627 - L1MCa LINE L1 -5140 1424 1096 385 237 0 0 chr4_random 10319234 10319308 -8532505 - MER77 LTR ERV1 -28 577 504 1426 196 111 68 chr4_random 10319308 10319728 -8532085 - MLT2B1 LTR ERVL 0 414 11 1467 251 62 78 chr4_random 10319738 10320239 -8531574 - MER77 LTR ERV1 -97 508 16 622 235 0 13 chr4_random 10320258 10320411 -8531402 - L1MCa LINE L1 -4950 1095 945 241 303 0 15 chr4_random 10320548 10320614 -8531199 - L1MCa LINE L1 -6357 207 143 228 35 0 0 chr4_random 10321806 10321835 -8529978 + (TG)n Simple_repeat Simple_repeat 2 30 0 379 266 40 58 chr4_random 10321953 10322126 -8529687 - MER63A DNA MER1_type -1 209 40 276 30 0 0 chr4_random 10322557 10322590 -8529223 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 21 0 0 0 chr4_random 10323556 10323577 -8528236 + AT_rich Low_complexity Low_complexity 1 21 0 695 74 37 28 chr4_random 10323689 10323797 -8528016 + HSMAR1 DNA Mariner 1 109 -1178 450 193 0 0 chr4_random 10323818 10323901 -8527912 - L1PA12 LINE L1 -1376 6208 6126 7853 119 65 16 chr4_random 10323921 10325134 -8526679 + HSMAR1 DNA Mariner 14 1286 -1 1098 117 0 12 chr4_random 10325205 10325376 -8526437 - L1PA13 LINE L1 -4 6159 5991 16384 217 31 14 chr4_random 10325484 10327835 -8523978 - L1PA12 LINE L1 -1455 6129 3820 1187 196 56 63 chr4_random 10327835 10328213 -8523600 + THE1C LTR MaLR 1 375 0 8443 173 6 36 chr4_random 10328216 10329842 -8521971 + THE1C-int LTR MaLR 4 1580 0 1603 170 75 28 chr4_random 10329842 10330200 -8521613 + THE1C LTR MaLR 1 375 0 16384 217 31 14 chr4_random 10330200 10333081 -8518732 - L1PA12 LINE L1 -3764 3820 7 1770 137 4 11 chr4_random 10333619 10333896 -8517917 - AluSx SINE Alu -7 305 31 208 339 0 0 chr4_random 10335392 10335448 -8516365 - L2 LINE L2 -1 3271 3216 28 0 0 0 chr4_random 10336868 10336896 -8514917 + AT_rich Low_complexity Low_complexity 1 28 0 2241 174 15 37 chr4_random 10337093 10337554 -8514259 - MSTB2 LTR MaLR -2 455 5 560 245 43 0 chr4_random 10337646 10337785 -8514028 - FRAM SINE Alu -25 151 7 885 155 0 26 chr4_random 10340228 10340383 -8511430 + MSTA LTR MaLR 278 428 0 1780 175 3 0 chr4_random 10340982 10341274 -8510539 + AluSx SINE Alu 7 299 -13 910 240 115 35 chr4_random 10342143 10342411 -8509402 + MLT1A1 LTR MaLR 1 246 -119 200 70 23 23 chr4_random 10342411 10342454 -8509359 + (TTTTG)n Simple_repeat Simple_repeat 3 170 0 1833 153 4 0 chr4_random 10342454 10342736 -8509077 - AluSq SINE Alu -1 325 1 910 240 115 35 chr4_random 10342736 10342803 -8509010 + MLT1A1 LTR MaLR 245 365 0 351 44 0 0 chr4_random 10342880 10342925 -8508888 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 36 0 0 chr4_random 10343272 10343300 -8508513 + AT_rich Low_complexity Low_complexity 1 28 0 3515 175 34 39 chr4_random 10343778 10344567 -8507246 - LTR1 LTR ERV1 0 785 1 16990 165 26 14 chr4_random 10344571 10347553 -8504260 - HUERS-P2 LTR ERV1 -4 3084 1 3309 184 44 46 chr4_random 10347553 10348372 -8503441 - LTR1 LTR ERV1 0 785 12 6725 163 30 45 chr4_random 10348514 10350011 -8501802 + L1PA14 LINE L1 3989 5492 -669 241 78 0 157 chr4_random 10350011 10350062 -8501751 - MADE1 DNA Mariner -3 77 35 6725 163 30 45 chr4_random 10350062 10350723 -8501090 + L1PA14 LINE L1 5492 6161 0 37 0 0 0 chr4_random 10350726 10350763 -8501050 + AT_rich Low_complexity Low_complexity 1 37 0 229 197 28 14 chr4_random 10350967 10351038 -8500775 + (TA)n Simple_repeat Simple_repeat 2 73 0 24 0 0 0 chr4_random 10351068 10351092 -8500721 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4_random 10351160 10351189 -8500624 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr4_random 10351516 10351552 -8500261 + AT_rich Low_complexity Low_complexity 1 36 0 1607 232 20 22 chr4_random 10351623 10351802 -8500011 + L1MB7 LINE L1 5710 5888 -296 1530 192 3 17 chr4_random 10351802 10352093 -8499720 + AluJo SINE Alu 3 289 -23 1607 232 20 22 chr4_random 10352093 10352366 -8499447 + L1MB7 LINE L1 5888 6161 -23 394 48 16 16 chr4_random 10352533 10352595 -8499218 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 355 369 43 5 chr4_random 10354649 10354836 -8496977 - MIR SINE MIR -26 236 43 443 212 9 35 chr4_random 10355403 10355516 -8496297 - LTR53 LTR ERVL -213 306 197 660 246 53 98 chr4_random 10355522 10355789 -8496024 - L1MDa LINE L1 -3512 3132 2855 2336 46 0 0 chr4_random 10355789 10356089 -8495724 - AluY SINE Alu 0 300 1 660 246 53 98 chr4_random 10356089 10356171 -8495642 - L1MDa LINE L1 -3789 2855 2771 754 236 104 94 chr4_random 10356171 10356671 -8495142 + MLT1D LTR MaLR 1 505 0 660 246 53 98 chr4_random 10356671 10356895 -8494918 - L1MDa LINE L1 -3873 2771 2576 304 111 56 0 chr4_random 10356963 10357053 -8494760 + (TA)n Simple_repeat Simple_repeat 2 96 0 32 26 0 0 chr4_random 10357053 10357092 -8494721 + AT_rich Low_complexity Low_complexity 1 39 0 306 287 27 47 chr4_random 10357092 10357242 -8494571 - L1MDa LINE L1 -4131 2515 2369 9088 244 52 46 chr4_random 10357339 10362560 -8489253 + L1MB1 LINE L1 94 5133 -859 303 49 0 0 chr4_random 10362560 10362601 -8489212 + (CA)n Simple_repeat Simple_repeat 2 42 0 9088 244 52 46 chr4_random 10362601 10363462 -8488351 + L1MB1 LINE L1 5133 5987 -5 622 234 44 0 chr4_random 10363475 10363612 -8488201 + MLT1C LTR MaLR 40 182 -285 40 0 0 0 chr4_random 10363614 10363654 -8488159 + AT_rich Low_complexity Low_complexity 1 40 0 824 239 73 9 chr4_random 10363672 10363890 -8487923 + MLT1C LTR MaLR 187 418 -49 326 307 42 52 chr4_random 10363905 10364117 -8487696 - L1MDa LINE L1 -4265 2381 2172 504 328 74 39 chr4_random 10364124 10364637 -8487176 - L1MDa LINE L1 -5998 544 14 1284 273 100 30 chr4_random 10364666 10365428 -8486385 - L1MC5 LINE L1 -35 7926 7112 1634 198 82 11 chr4_random 10365431 10365799 -8486014 + MSTD LTR MaLR 1 394 -2 303 285 56 14 chr4_random 10365799 10365943 -8485870 - L1MC5 LINE L1 -850 7111 6962 257 291 23 0 chr4_random 10366050 10366136 -8485677 - L1MC4 LINE L1 -1065 6977 6890 1592 246 94 53 chr4_random 10366400 10366868 -8484945 - MER70B LTR ERVL 0 578 92 574 159 21 175 chr4_random 10366868 10366967 -8484846 - MER70A LTR ERVL -312 160 102 7400 38 0 0 chr4_random 10366967 10368114 -8483699 - L1PA3 LINE L1 0 6155 5007 574 159 21 175 chr4_random 10368114 10368203 -8483610 - MER70A LTR ERVL -370 102 1 1785 191 30 61 chr4_random 10368208 10368637 -8483176 - MER67D LTR ERV1 -98 416 1 189 0 0 0 chr4_random 10368639 10368660 -8483153 + (CA)n Simple_repeat Simple_repeat 2 22 0 234 247 0 94 chr4_random 10368955 10369040 -8482773 - L1MC4a LINE L1 -1455 6353 6277 634 167 33 47 chr4_random 10369049 10369199 -8482614 + L1MB1 LINE L1 6018 6165 -3 296 257 0 0 chr4_random 10371099 10371173 -8480640 - LTR41 LTR ERVL 0 773 700 266 250 0 0 chr4_random 10371267 10371331 -8480482 - MER52C LTR ERV1 -1192 86 23 2393 185 10 4 chr4_random 10371331 10371811 -8480002 + L1MB3 LINE L1 5701 6183 0 442 250 0 0 chr4_random 10372190 10372306 -8479507 + MER53 DNA DNA 74 189 0 231 250 12 12 chr4_random 10373529 10373609 -8478204 + (TA)n Simple_repeat Simple_repeat 2 81 0 24 67 0 0 chr4_random 10373726 10373771 -8478042 + AT_rich Low_complexity Low_complexity 1 45 0 374 328 0 70 chr4_random 10373906 10373951 -8477862 + L2 LINE L2 2234 2281 -1033 895 216 10 10 chr4_random 10373951 10374159 -8477654 + MER3 DNA MER1_type 1 208 -1 374 328 0 70 chr4_random 10374159 10374284 -8477529 + L2 LINE L2 2281 2392 -922 285 259 99 0 chr4_random 10374455 10374536 -8477277 + L2 LINE L2 3225 3313 0 212 278 102 70 chr4_random 10374616 10374803 -8477010 + MIR SINE MIR 45 237 -25 184 273 82 36 chr4_random 10374859 10374969 -8476844 + MIR3 SINE MIR 87 201 -7 22 0 0 0 chr4_random 10377412 10377434 -8474379 + AT_rich Low_complexity Low_complexity 1 22 0 1516 278 50 81 chr4_random 10377625 10377985 -8473828 - L1MEc LINE L1 -2100 4544 4174 2421 61 3 0 chr4_random 10377985 10378278 -8473535 - AluY SINE Alu -17 294 1 1516 278 50 81 chr4_random 10378278 10379345 -8472468 - L1MEc LINE L1 -2470 4174 3161 1259 168 31 31 chr4_random 10379363 10379619 -8472194 - AluSx SINE Alu -15 297 42 22 35 0 0 chr4_random 10379982 10380011 -8471802 + AT_rich Low_complexity Low_complexity 1 29 0 1168 279 15 18 chr4_random 10380183 10380581 -8471232 - L1MEc LINE L1 -4671 1975 1579 * 11260 129 15 28 chr4_random 10380576 10382541 -8469272 - L1P3 LINE L1 -4486 1975 8 916 244 55 0 chr4_random 10382540 10382815 -8468998 - L1M4 LINE L1 -5202 1340 1051 * 704 208 12 35 chr4_random 10382818 10382991 -8468822 - L1M4 LINE L1 -6371 171 3 1221 103 0 17 chr4_random 10383157 10383332 -8468481 - AluSg/x SINE Alu -15 297 126 207 0 0 0 chr4_random 10384211 10384234 -8467579 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 301 245 25 128 chr4_random 10384407 10384611 -8467202 - L1MEc LINE L1 -5181 1644 1462 1481 332 65 70 chr4_random 10384693 10386181 -8465632 + L2 LINE L2 1812 3298 -15 25 31 0 0 chr4_random 10386998 10387030 -8464783 + AT_rich Low_complexity Low_complexity 1 32 0 3389 191 71 8 chr4_random 10389032 10389780 -8462033 + L1PA13 LINE L1 3913 4707 -1439 * 4963 135 24 14 chr4_random 10389749 10390706 -8461107 + L1PA13 LINE L1 5099 6074 -89 32 0 0 0 chr4_random 10391014 10391046 -8460767 + AT_rich Low_complexity Low_complexity 1 32 0 4876 176 25 17 chr4_random 10391573 10393444 -8458369 - L1MA6 LINE L1 -106 6194 4315 12981 124 10 7 chr4_random 10393444 10395398 -8456415 + L1PA5 LINE L1 1 1961 -4185 15910 71 5 1 chr4_random 10395398 10398314 -8453499 + L1PA5 LINE L1 3231 6152 -2 521 164 164 13 chr4_random 10398317 10398403 -8453410 - L1MA6 LINE L1 -1820 4326 4254 364 62 31 0 chr4_random 10398403 10398467 -8453346 + (TA)n Simple_repeat Simple_repeat 2 67 0 521 164 164 13 chr4_random 10398467 10398532 -8453281 - L1MA6 LINE L1 -1892 4254 4152 * 5746 196 48 31 chr4_random 10398529 10399957 -8451856 - L1 LINE L1 -1737 4409 2957 397 62 31 0 chr4_random 10401339 10401404 -8450409 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 419 155 39 0 chr4_random 10402374 10402477 -8449336 + (TA)n Simple_repeat Simple_repeat 2 108 0 26 50 0 0 chr4_random 10402526 10402566 -8449247 + AT_rich Low_complexity Low_complexity 1 40 0 1762 189 83 13 chr4_random 10403606 10404002 -8447811 + MSTA LTR MaLR 1 424 -4 1174 172 44 0 chr4_random 10404007 10404234 -8447579 + L1MB1 LINE L1 5892 6128 -40 330 269 90 58 chr4_random 10404538 10404761 -8447052 - L1M4 LINE L1 -1730 4416 4187 441 289 54 33 chr4_random 10404762 10405004 -8446809 - L1M4 LINE L1 -2022 4124 3878 225 0 0 0 chr4_random 10405120 10405145 -8446668 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 54 0 0 chr4_random 10405865 10405902 -8445911 + AT_rich Low_complexity Low_complexity 1 37 0 309 252 159 37 chr4_random 10405974 10406081 -8445732 + L2 LINE L2 3194 3313 0 1922 180 26 3 chr4_random 10406432 10406771 -8445042 + THE1B LTR MaLR 18 364 0 727 94 57 0 chr4_random 10406963 10407067 -8444746 + MSTC LTR MaLR 1 110 -318 1845 244 47 63 chr4_random 10407067 10407496 -8444317 + LTR26 LTR ERV1 1 419 -184 1108 144 27 0 chr4_random 10407496 10407684 -8444129 + L1PB2 LINE L1 5952 6144 -7 1845 244 47 63 chr4_random 10407684 10407853 -8443960 + LTR26 LTR ERV1 419 589 -14 1561 189 12 48 chr4_random 10407867 10408201 -8443612 + MSTC LTR MaLR 107 428 0 24 0 0 0 chr4_random 10409271 10409295 -8442518 + AT_rich Low_complexity Low_complexity 1 24 0 414 57 0 0 chr4_random 10409485 10409538 -8442275 + (CA)n Simple_repeat Simple_repeat 2 54 0 450 0 0 0 chr4_random 10409805 10409855 -8441958 + (CA)n Simple_repeat Simple_repeat 2 51 0 203 222 0 22 chr4_random 10410658 10410703 -8441110 + MIR3 SINE MIR 163 206 -2 472 288 36 27 chr4_random 10410728 10410950 -8440863 + L1ME1 LINE L1 44 267 -6129 * 2067 272 114 25 chr4_random 10410932 10412021 -8439792 + L1ME1 LINE L1 5014 6187 -48 229 234 32 21 chr4_random 10412151 10412245 -8439568 + (TA)n Simple_repeat Simple_repeat 2 96 0 276 256 50 33 chr4_random 10412376 10412497 -8439316 + MLT2F LTR ERVL 20 142 -521 826 316 56 6 chr4_random 10412534 10412876 -8438937 + MLT2F LTR ERVL 239 597 -66 221 367 95 19 chr4_random 10414558 10414768 -8437045 + L2 LINE L2 2581 2806 -508 402 309 168 30 chr4_random 10415635 10416004 -8435809 - MLT1J2 LTR MaLR -15 435 12 1693 118 0 0 chr4_random 10416054 10416332 -8435481 - L1PA7 LINE L1 0 6154 5885 25 51 0 0 chr4_random 10416712 10416751 -8435062 + AT_rich Low_complexity Low_complexity 1 39 0 458 60 0 15 chr4_random 10417142 10417209 -8434604 + (TC)n Simple_repeat Simple_repeat 1 66 0 300 133 0 0 chr4_random 10417210 10417270 -8434543 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 2712 98 64 5 chr4_random 10417355 10417736 -8434077 + MLT2A1 LTR ERVL 1 411 -33 198 0 0 0 chr4_random 10417736 10417758 -8434055 + (TA)n Simple_repeat Simple_repeat 2 23 0 2712 98 64 5 chr4_random 10417758 10417795 -8434018 + MLT2A1 LTR ERVL 411 444 0 322 258 151 19 chr4_random 10418270 10418429 -8433384 + L1MC/D LINE L1 5380 5559 -2249 21 95 0 0 chr4_random 10418571 10418634 -8433179 + AT_rich Low_complexity Low_complexity 1 63 0 34 0 0 0 chr4_random 10419613 10419647 -8432166 + AT_rich Low_complexity Low_complexity 1 34 0 182 62 31 0 chr4_random 10419696 10419728 -8432085 + (GA)n Simple_repeat Simple_repeat 2 34 0 3664 50 9 0 chr4_random 10421094 10421549 -8430264 - L1PA4 LINE L1 -1 6154 5696 667 237 26 7 chr4_random 10472418 10472570 -8379243 + MLT1A2 LTR MaLR 1 155 -219 609 312 6 0 chr4_random 10473960 10474130 -8377683 + MLT1F LTR MaLR 1 171 -371 196 308 0 0 chr4_random 10474434 10474486 -8377327 - MIR SINE MIR -6 256 205 288 114 14 29 chr4_random 10474604 10474674 -8377139 + (GA)n Simple_repeat Simple_repeat 1 69 0 202 200 43 0 chr4_random 10476020 10476090 -8375723 + (TA)n Simple_repeat Simple_repeat 2 74 0 180 200 0 0 chr4_random 10476653 10476698 -8375115 + A-rich Low_complexity Low_complexity 3 47 0 289 268 145 13 chr4_random 10477120 10477355 -8374458 - L1ME4a LINE L1 -3 6118 5853 23 68 0 0 chr4_random 10477364 10477408 -8374405 + AT_rich Low_complexity Low_complexity 1 44 0 7604 28 0 0 chr4_random 10477868 10478925 -8372888 - L1PA3 LINE L1 -3 6152 5099 568 256 6 83 chr4_random 10479137 10479317 -8372496 + MIR SINE MIR 4 169 -93 1702 294 89 34 chr4_random 10480910 10480971 -8370842 - L2 LINE L2 -95 3218 3162 2090 120 0 0 chr4_random 10480971 10481307 -8370506 + AluSq SINE Alu 3 338 0 1702 294 89 34 chr4_random 10481307 10482247 -8369566 - L2 LINE L2 -151 3162 2150 199 361 60 8 chr4_random 10482230 10482363 -8369450 - L2 LINE L2 -1356 1958 1819 * 16171 44 1 1 chr4_random 10482507 10484548 -8367265 - L1P LINE L1 -2387 3759 1718 4117 31 0 0 chr4_random 10484547 10485037 -8366776 + L1P LINE L1 3885 4374 -1772 * 22816 108 6 13 chr4_random 10485143 10489537 -8362276 + L1PA7 LINE L1 1795 6154 0 358 116 29 0 chr4_random 10489657 10489726 -8362087 + L1MA5 LINE L1 6230 6300 0 389 328 100 9 chr4_random 10490314 10490543 -8361270 - MLT1J1 LTR MaLR -152 294 45 279 275 107 27 chr4_random 10490761 10490910 -8360903 + L2 LINE L2 2688 2848 -466 23 0 0 0 chr4_random 10491666 10491689 -8360124 + AT_rich Low_complexity Low_complexity 1 23 0 518 203 59 43 chr4_random 10491701 10491888 -8359925 - L1MA9 LINE L1 -39 6273 6084 1891 119 6 64 chr4_random 10492089 10492401 -8359412 + AluSx SINE Alu 1 294 -18 11350 141 9 41 chr4_random 10492767 10495989 -8355824 - L1P3 LINE L1 -3380 3081 1 671 309 74 39 chr4_random 10496649 10497135 -8354678 - L1ME3A LINE L1 -208 5962 5460 344 357 71 0 chr4_random 10497215 10497470 -8354343 - L1ME3A LINE L1 -747 5399 5127 577 335 45 12 chr4_random 10497545 10497945 -8353868 - L1ME3A LINE L1 -2384 3762 3350 197 397 88 0 chr4_random 10498132 10498268 -8353545 + L2 LINE L2 2592 2739 -575 1955 137 50 34 chr4_random 10498532 10498890 -8352923 + THE1B LTR MaLR 1 364 0 2176 104 0 7 chr4_random 10498989 10499296 -8352517 + AluSc SINE Alu 2 306 -3 272 279 40 125 chr4_random 10500020 10500234 -8351579 + L2 LINE L2 2717 2897 -375 1867 105 0 0 chr4_random 10500234 10500500 -8351313 - L1PA7 LINE L1 -4 6150 5885 272 279 40 125 chr4_random 10500500 10500631 -8351182 + L2 LINE L2 2897 3038 -234 193 282 169 0 chr4_random 10500733 10500804 -8351009 + L2 LINE L2 3190 3272 0 268 339 39 16 chr4_random 10501554 10501681 -8350132 + L2 LINE L2 2227 2356 -958 1402 181 45 30 chr4_random 10501956 10502287 -8349526 - L1M3 LINE L1 -516 5818 5483 661 286 41 39 chr4_random 10502292 10502655 -8349158 + L1MA9 LINE L1 5919 6282 -30 475 372 11 5 chr4_random 10502670 10502858 -8348955 + L2 LINE L2 2454 2642 -672 24 77 0 0 chr4_random 10502909 10502961 -8348852 + AT_rich Low_complexity Low_complexity 1 52 0 255 290 73 11 chr4_random 10503415 10503533 -8348280 + MIR3 SINE MIR 47 165 -43 1440 241 22 3 chr4_random 10503724 10504048 -8347765 + MLT1C LTR MaLR 138 467 0 1798 199 11 34 chr4_random 10504062 10504274 -8347539 + MER7A DNA MER2_type 4 204 -2834 2691 63 38 8 chr4_random 10504274 10504641 -8347172 + L1PA7 LINE L1 5777 6154 0 1798 199 11 34 chr4_random 10504641 10504780 -8347033 + MER7A DNA MER2_type 204 345 -1 303 314 0 20 chr4_random 10507852 10507954 -8343859 - L2 LINE L2 0 3313 3214 615 12 36 0 chr4_random 10508657 10508741 -8343072 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 297 304 61 43 chr4_random 10508747 10508862 -8342951 - L2 LINE L2 -9 3263 3147 669 310 111 60 chr4_random 10509876 10510724 -8341089 - L1MEd LINE L1 -4701 1430 637 1659 142 139 27 chr4_random 10511951 10512288 -8339525 + THE1C LTR MaLR 1 375 0 13139 146 16 114 chr4_random 10513904 10514435 -8337378 - L1P LINE L1 -3330 2816 2235 312 48 0 0 chr4_random 10514435 10514477 -8337336 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 14867 36 1 1 chr4_random 10514477 10517057 -8334756 - L1PA3 LINE L1 -10 6145 3565 13139 146 16 114 chr4_random 10517057 10519632 -8332181 - L1P LINE L1 -3909 2237 13 17156 102 8 2 chr4_random 10519633 10522973 -8328840 + L1PA7 LINE L1 2812 6152 -2 195 42 0 0 chr4_random 10524518 10524542 -8327271 + (A)n Simple_repeat Simple_repeat 1 24 0 281 331 68 7 chr4_random 10524819 10524967 -8326846 + MIR SINE MIR 103 259 -3 212 231 96 0 chr4_random 10525081 10525133 -8326680 - MIR SINE MIR -68 194 138 11334 48 0 0 chr4_random 10525145 10526568 -8325245 - L1P LINE L1 -3190 2956 1534 7276 42 0 8 chr4_random 10526568 10527960 -8323853 + L1PA4 LINE L1 4769 6153 -2 903 251 103 26 chr4_random 10528769 10529108 -8322705 + MLT1A1 LTR MaLR 1 365 0 380 260 159 77 chr4_random 10529157 10529496 -8322317 - Charlie8 DNA MER1_type -2146 271 31 582 303 51 0 chr4_random 10529683 10529878 -8321935 + L2 LINE L2 2585 2789 -525 1628 183 10 16 chr4_random 10529928 10530240 -8321573 - AluJb SINE Alu -2 310 1 324 376 43 30 chr4_random 10530254 10530488 -8321325 + L2 LINE L2 2833 3069 -244 1325 189 13 29 chr4_random 10530945 10531257 -8320556 + L1MA3 LINE L1 5998 6304 -1 318 310 26 26 chr4_random 10531280 10531396 -8320417 + L2 LINE L2 2681 2796 -518 239 305 182 20 chr4_random 10531390 10531593 -8320220 + L2 LINE L2 2988 3223 -90 * 521 191 9 0 chr4_random 10531645 10531750 -8320063 - L1MA4 LINE L1 -120 6180 6075 347 0 23 0 chr4_random 10531754 10531797 -8320016 + (TA)n Simple_repeat Simple_repeat 1 44 0 2176 142 7 0 chr4_random 10531943 10532253 -8319560 - AluSx SINE Alu 0 312 1 6613 223 26 14 chr4_random 10532384 10534123 -8317690 + L1MA6 LINE L1 14 2119 -5446 13856 185 24 36 chr4_random 10534126 10534963 -8316850 + L1MA6 LINE L1 2900 3746 -3973 1839 167 0 28 chr4_random 10534963 10535281 -8316532 + AluSx SINE Alu 1 309 -3 13856 185 24 36 chr4_random 10535281 10536001 -8315812 + L1MA6 LINE L1 3746 4474 -3245 482 167 12 12 chr4_random 10536001 10536085 -8315728 + AluS SINE Alu 1 84 -228 13856 185 24 36 chr4_random 10536085 10537027 -8314786 + L1MA6 LINE L1 4474 5427 -2292 1664 142 113 29 chr4_random 10537027 10537200 -8314613 + THE1C LTR MaLR 3 160 -215 228 35 0 0 chr4_random 10537200 10537229 -8314584 + (TC)n Simple_repeat Simple_repeat 1 29 0 1664 142 113 29 chr4_random 10537229 10537399 -8314414 + THE1C LTR MaLR 160 375 0 8568 149 31 40 chr4_random 10537401 10537896 -8313917 + THE1C-int LTR MaLR 3 501 -1079 1895 127 0 31 chr4_random 10537896 10538187 -8313626 + AluSx SINE Alu 11 292 -20 8568 149 31 40 chr4_random 10538187 10539284 -8312529 + THE1C-int LTR MaLR 501 1580 0 1327 159 52 132 chr4_random 10539284 10539692 -8312121 + THE1C LTR MaLR 1 375 0 13856 185 24 36 chr4_random 10539692 10541950 -8309863 + L1MA6 LINE L1 5426 7712 -7 332 316 98 48 chr4_random 10542135 10542493 -8309320 - MLT1I LTR MaLR -2 407 32 898 54 0 0 chr4_random 10542525 10542636 -8309177 + AluY SINE Alu 199 309 -2 318 280 68 65 chr4_random 10542836 10543115 -8308698 - MER90 LTR ERV1 -64 511 232 23 0 0 0 chr4_random 10543276 10543299 -8308514 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr4_random 10543942 10543983 -8307830 + (CA)n Simple_repeat Simple_repeat 1 41 0 26 30 0 0 chr4_random 10544044 10544077 -8307736 + AT_rich Low_complexity Low_complexity 1 33 0 1127 233 66 62 chr4_random 10544496 10544951 -8306862 + MLT1D LTR MaLR 21 477 -28 21 57 0 0 chr4_random 10545180 10545215 -8306598 + AT_rich Low_complexity Low_complexity 1 35 0 256 374 110 12 chr4_random 10545499 10545745 -8306068 - L2 LINE L2 -871 2443 2174 243 327 0 0 chr4_random 10545828 10545938 -8305875 + A-rich Low_complexity Low_complexity 1 110 0 479 352 109 4 chr4_random 10547142 10547447 -8304366 + L2 LINE L2 2665 2999 -314 294 278 10 116 chr4_random 10547475 10547673 -8304140 + L2 LINE L2 3127 3303 -10 368 338 68 8 chr4_random 10548839 10549073 -8302740 + L1M4 LINE L1 2925 3172 -2974 273 289 10 0 chr4_random 10549688 10549785 -8302028 - L1ME1 LINE L1 -45 6121 6024 568 135 10 0 chr4_random 10549787 10549883 -8301930 + L1MA3 LINE L1 6208 6304 -1 25 0 0 0 chr4_random 10552342 10552367 -8299446 + AT_rich Low_complexity Low_complexity 1 25 0 331 348 0 29 chr4_random 10552491 10552698 -8299115 + L1ME1 LINE L1 225 425 -5998 194 0 122 0 chr4_random 10552710 10552751 -8299062 + (CAAA)n Simple_repeat Simple_repeat 4 49 0 1214 209 84 129 chr4_random 10553224 10553759 -8298054 - MLT2B1 LTR ERVL -7 513 3 1921 221 18 61 chr4_random 10553813 10554357 -8297456 + L1MD3 LINE L1 7474 7994 -1 273 331 8 0 chr4_random 10554400 10554521 -8297292 + L1ME1 LINE L1 4127 4248 -2693 393 311 0 25 chr4_random 10554525 10554644 -8297169 + L2 LINE L2 3180 3295 -18 2695 273 72 55 chr4_random 10554675 10556146 -8295667 + L1ME1 LINE L1 4267 5762 -1179 1755 269 51 18 chr4_random 10556629 10557554 -8294259 + L1ME1 LINE L1 5765 6722 -239 317 206 41 27 chr4_random 10557619 10557671 -8294142 + (TA)n Simple_repeat Simple_repeat 2 52 -97 2089 82 0 62 chr4_random 10557671 10557976 -8293837 + AluY SINE Alu 1 286 -25 317 206 41 27 chr4_random 10557976 10558069 -8293744 + (TA)n Simple_repeat Simple_repeat 52 149 0 579 237 58 0 chr4_random 10558111 10558301 -8293512 - L1MD3 LINE L1 -8 7987 7787 180 0 83 28 chr4_random 10558412 10558448 -8293365 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1872 248 68 56 chr4_random 10558646 10559771 -8292042 + L1MCc LINE L1 1311 2433 -4508 2389 70 0 3 chr4_random 10559790 10560092 -8291721 - AluY SINE Alu -8 303 3 37 0 0 0 chr4_random 10560105 10560142 -8291671 + AT_rich Low_complexity Low_complexity 1 37 0 288 343 94 63 chr4_random 10560283 10560537 -8291276 + L2 LINE L2 2992 3253 -19 441 289 40 33 chr4_random 10560688 10560840 -8290973 - MIR SINE MIR -57 205 53 230 344 138 6 chr4_random 10561215 10561375 -8290438 - MIR SINE MIR 0 262 82 207 268 61 49 chr4_random 10562098 10562180 -8289633 - MIR SINE MIR -73 189 107 267 152 0 0 chr4_random 10562184 10562230 -8289583 + (CA)n Simple_repeat Simple_repeat 2 47 0 391 156 0 0 chr4_random 10562354 10562418 -8289395 + MIR SINE MIR 175 238 -24 744 296 107 68 chr4_random 10562440 10562808 -8289005 - L2 LINE L2 -2 3311 2959 6890 56 4 15 chr4_random 10562808 10563829 -8287984 + L1PA5 LINE L1 5170 6154 0 744 296 107 68 chr4_random 10563829 10564224 -8287589 - L2 LINE L2 -354 2959 2508 426 244 71 60 chr4_random 10565498 10565666 -8286147 + MIR SINE MIR 93 262 0 192 77 0 0 chr4_random 10566373 10566399 -8285414 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2043 157 51 14 chr4_random 10567308 10567659 -8284154 - THE1B LTR MaLR 0 364 1 10740 122 3 5 chr4_random 10567660 10569242 -8282571 - THE1B-int LTR MaLR -1 1579 1 1840 176 48 14 chr4_random 10569242 10569594 -8282219 - THE1B LTR MaLR 0 364 1 773 264 48 51 chr4_random 10570028 10570381 -8281432 - MLT1E2 LTR MaLR 0 626 275 13940 214 24 19 chr4_random 10570381 10574697 -8277116 + L1PA15 LINE L1 1829 6164 -1 306 300 11 0 chr4_random 10574813 10574903 -8276910 - MLT1E2 LTR MaLR -504 150 60 33 0 0 0 chr4_random 10575020 10575053 -8276760 + AT_rich Low_complexity Low_complexity 1 33 0 2283 75 0 3 chr4_random 10575053 10575346 -8276467 - AluY SINE Alu -19 292 1 1012 219 42 0 chr4_random 10576692 10576907 -8274906 - MER58A DNA MER1_type 0 224 1 1646 201 43 30 chr4_random 10577043 10577401 -8274412 + MLT2D LTR ERVL 1 366 -48 333 0 0 0 chr4_random 10577401 10577438 -8274375 + (TG)n Simple_repeat Simple_repeat 2 38 0 1665 210 18 9 chr4_random 10577456 10577794 -8274019 - MER7A DNA MER2_type -7 339 1 385 42 0 0 chr4_random 10577833 10577881 -8273932 + MLT2D LTR ERVL 417 464 0 192 226 0 0 chr4_random 10578315 10578377 -8273436 + (TA)n Simple_repeat Simple_repeat 2 63 0 347 333 31 46 chr4_random 10579793 10579894 -8271919 - MIR SINE MIR -51 211 113 1001 240 29 78 chr4_random 10579894 10580278 -8271535 - MLT1A1 LTR MaLR 0 365 1 347 333 31 46 chr4_random 10580278 10580371 -8271442 - MIR SINE MIR -149 113 20 237 159 0 0 chr4_random 10580692 10580736 -8271077 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 22 0 0 0 chr4_random 10580873 10580895 -8270918 + AT_rich Low_complexity Low_complexity 1 22 0 220 187 0 0 chr4_random 10581123 10581170 -8270643 + MIR SINE MIR 98 145 -63 1610 173 3 3 chr4_random 10581244 10581547 -8270266 - AluSx SINE Alu 0 303 1 184 372 61 43 chr4_random 10582802 10582966 -8268847 - L2 LINE L2 -41 3231 3065 974 233 41 119 chr4_random 10584581 10585002 -8266811 - MLT1A2 LTR MaLR 0 374 2 1222 93 62 7 chr4_random 10585434 10585701 -8266112 + THE1A LTR MaLR 1 355 0 10585 114 25 5 chr4_random 10585701 10587250 -8264563 + THE1A-int LTR MaLR 1 1580 0 2241 118 47 0 chr4_random 10587250 10587589 -8264224 + THE1A LTR MaLR 1 355 0 26 50 0 0 chr4_random 10589968 10590008 -8261805 + AT_rich Low_complexity Low_complexity 1 40 0 23868 149 20 14 chr4_random 10590603 10591808 -8260005 + L1PA8A LINE L1 2 1198 -5248 180 0 0 0 chr4_random 10591808 10591828 -8259985 + (CCA)n Simple_repeat Simple_repeat 1 20 0 23868 149 20 14 chr4_random 10591828 10596962 -8254851 + L1PA8A LINE L1 1198 6445 -1 203 179 0 0 chr4_random 10596967 10597006 -8254807 + (TA)n Simple_repeat Simple_repeat 2 40 0 2072 167 3 0 chr4_random 10597007 10597372 -8254441 + L1PB1 LINE L1 5785 6150 -1 22 0 0 0 chr4_random 10597449 10597471 -8254342 + AT_rich Low_complexity Low_complexity 1 22 0 1764 146 23 16 chr4_random 10597548 10597989 -8253824 + L1PB4 LINE L1 5629 6148 -8 286 306 0 0 chr4_random 10597990 10598075 -8253738 + (TA)n Simple_repeat Simple_repeat 2 86 0 1048 302 57 23 chr4_random 10598075 10598588 -8253225 + Charlie7 DNA MER1_type 121 650 -1962 207 0 0 0 chr4_random 10599061 10599084 -8252729 + (A)n Simple_repeat Simple_repeat 1 23 0 202 282 148 4 chr4_random 10599535 10599698 -8252115 + MIR SINE MIR 2 252 -10 22 35 0 0 chr4_random 10600107 10600136 -8251677 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr4_random 10600496 10600538 -8251275 + AT_rich Low_complexity Low_complexity 1 42 0 245 219 0 55 chr4_random 10600762 10600835 -8250978 + MLT1J LTR MaLR 110 178 -333 250 357 26 55 chr4_random 10601457 10601729 -8250084 - ERVL LTR ERVL -4645 1119 856 24 53 0 0 chr4_random 10603172 10603210 -8248603 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr4_random 10603538 10603562 -8248251 + AT_rich Low_complexity Low_complexity 1 24 0 819 348 38 38 chr4_random 10603977 10604531 -8247282 - L2 LINE L2 -469 2845 2292 38 0 0 0 chr4_random 10605580 10605618 -8246195 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr4_random 10608390 10608422 -8243391 + AT_rich Low_complexity Low_complexity 1 32 0 227 238 0 79 chr4_random 10608483 10608546 -8243267 + MER5A DNA MER1_type 30 87 -102 411 21 0 0 chr4_random 10610768 10610816 -8240997 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr4_random 10611731 10611752 -8240061 + AT_rich Low_complexity Low_complexity 1 21 0 1794 174 0 0 chr4_random 10611838 10612136 -8239677 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr4_random 10612361 10612382 -8239431 + AT_rich Low_complexity Low_complexity 1 21 0 2347 93 0 6 chr4_random 10612415 10612726 -8239087 - AluSq SINE Alu -4 309 1 767 288 102 21 chr4_random 10613238 10613610 -8238203 + LTR16B LTR ERVL 49 450 -14 1363 333 36 24 chr4_random 10614185 10615422 -8236391 + HERVL LTR ERVL 697 2012 -2984 637 277 40 76 chr4_random 10615620 10615949 -8235864 + HERVL LTR ERVL 2092 2408 -2588 795 273 71 8 chr4_random 10616005 10616299 -8235514 + L1MB7 LINE L1 5850 6164 -20 195 114 0 0 chr4_random 10616408 10616443 -8235370 + (CA)n Simple_repeat Simple_repeat 2 36 0 1616 237 59 7 chr4_random 10616887 10617326 -8234487 + L1MC2 LINE L1 5875 6336 -8 32 0 0 0 chr4_random 10617609 10617641 -8234172 + AT_rich Low_complexity Low_complexity 1 32 0 204 294 200 24 chr4_random 10618070 10618240 -8233573 - MIR SINE MIR 0 262 63 608 291 36 55 chr4_random 10618308 10618638 -8233175 - L1MA9 LINE L1 -38 6274 5951 28 22 0 22 chr4_random 10619465 10619492 -8232321 + AT_rich Low_complexity Low_complexity 1 28 -17 1544 174 17 31 chr4_random 10619492 10619786 -8232027 - AluJo SINE Alu -20 292 3 28 22 0 22 chr4_random 10619786 10619804 -8232009 + AT_rich Low_complexity Low_complexity 28 45 0 357 294 33 26 chr4_random 10620053 10620206 -8231607 - MER69A DNA AcHobo -15 162 9 373 319 98 20 chr4_random 10620213 10620417 -8231396 - MIR SINE MIR -7 255 36 25 31 0 0 chr4_random 10620417 10620449 -8231364 + AT_rich Low_complexity Low_complexity 1 32 0 246 333 61 61 chr4_random 10620468 10620600 -8231213 - MIR3 SINE MIR -30 178 47 23 33 0 0 chr4_random 10621281 10621311 -8230502 + AT_rich Low_complexity Low_complexity 1 30 0 205 205 0 0 chr4_random 10622421 10622460 -8229353 + A-rich Low_complexity Low_complexity 1 39 0 335 385 45 24 chr4_random 10622723 10622970 -8228843 + HERVL LTR ERVL 2704 2955 -2041 2456 59 0 3 chr4_random 10623087 10623394 -8228419 + AluY SINE Alu 1 306 -5 364 386 48 30 chr4_random 10624406 10624802 -8227011 + HERVL LTR ERVL 4258 4660 -1104 383 326 82 12 chr4_random 10624861 10625269 -8226544 + HERVL LTR ERVL 4741 5213 -441 953 9 0 0 chr4_random 10626317 10626429 -8225384 - L1P2 LINE L1 -689 5465 5354 337 311 0 0 chr4_random 10626439 10626529 -8225284 - L1MC4 LINE L1 -1339 6703 6614 422 303 144 16 chr4_random 10626811 10626999 -8224814 - MIR SINE MIR -3 259 48 21 0 0 0 chr4_random 10627891 10627912 -8223901 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr4_random 10628868 10628891 -8222922 + AT_rich Low_complexity Low_complexity 1 23 0 1235 14 0 14 chr4_random 10630085 10630232 -8221581 - L1PA2 LINE L1 -5 6150 6006 248 284 70 85 chr4_random 10630565 10630766 -8221047 + L2 LINE L2 3111 3308 -5 367 366 107 34 chr4_random 10631614 10632149 -8219664 + L1MC4a LINE L1 5286 5859 -1949 53 40 0 0 chr4_random 10632275 10632349 -8219464 + AT_rich Low_complexity Low_complexity 1 74 0 211 231 144 39 chr4_random 10632363 10632467 -8219346 - MIR SINE MIR -30 232 118 2493 188 11 5 chr4_random 10632797 10633244 -8218569 - Tigger2 DNA MER2_type -1 2717 2268 319 239 0 0 chr4_random 10633231 10633298 -8218515 - Tigger2 DNA MER2_type -2651 67 1 * 26 50 0 0 chr4_random 10633420 10633460 -8218353 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr4_random 10633552 10633573 -8218240 + AT_rich Low_complexity Low_complexity 1 21 0 672 292 17 0 chr4_random 10634457 10634635 -8217178 + MER5A DNA MER1_type 9 189 0 1722 163 7 0 chr4_random 10636337 10636614 -8215199 + AluSx SINE Alu 1 279 -33 285 51 0 0 chr4_random 10636618 10636657 -8215156 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 681 325 20 7 chr4_random 10637042 10637270 -8214543 + MIR SINE MIR 2 227 -35 203 103 26 0 chr4_random 10637835 10637874 -8213939 + CT-rich Low_complexity Low_complexity 2 41 0 239 355 16 65 chr4_random 10638298 10638422 -8213391 - L2 LINE L2 -19 3253 3136 277 328 67 52 chr4_random 10638504 10638638 -8213175 - L2 LINE L2 -268 3045 2910 27 62 0 0 chr4_random 10638662 10638710 -8213103 + AT_rich Low_complexity Low_complexity 1 48 0 30 45 0 0 chr4_random 10639011 10639055 -8212758 + AT_rich Low_complexity Low_complexity 1 44 0 366 95 0 32 chr4_random 10639119 10639182 -8212631 + L1MC1 LINE L1 6271 6331 -2 198 0 0 0 chr4_random 10639644 10639666 -8212147 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 327 278 28 113 chr4_random 10639844 10640128 -8211685 - MLT1J LTR MaLR -244 267 8 358 347 71 57 chr4_random 10640416 10641064 -8210749 - L2 LINE L2 -9 3263 2600 2068 187 8 3 chr4_random 10642503 10642867 -8208946 + MLT2D LTR ERVL 1 366 -48 241 133 44 0 chr4_random 10642954 10642999 -8208814 + MLT2D LTR ERVL 464 510 -10 198 371 0 0 chr4_random 10643752 10643814 -8207999 + L2 LINE L2 3214 3275 -38 242 65 0 0 chr4_random 10644995 10645026 -8206787 + MLT1I LTR MaLR 99 129 -280 349 401 28 6 chr4_random 10645052 10645234 -8206579 + MLT1I LTR MaLR 200 385 -24 227 302 35 47 chr4_random 10645284 10645370 -8206443 - L2 LINE L2 0 3272 3188 180 0 0 0 chr4_random 10645405 10645425 -8206388 + (TC)n Simple_repeat Simple_repeat 1 20 0 217 238 33 33 chr4_random 10645916 10646067 -8205746 + (TA)n Simple_repeat Simple_repeat 1 151 0 242 289 83 65 chr4_random 10646339 10646616 -8205197 + MER90 LTR ERV1 250 531 -83 564 281 29 12 chr4_random 10648679 10648850 -8202963 + MLT1G1 LTR MaLR 1 174 -421 386 288 36 7 chr4_random 10649063 10649202 -8202611 + MLT1G LTR MaLR 437 579 -11 293 341 0 8 chr4_random 10649225 10649351 -8202462 - MIR SINE MIR -128 134 10 22 35 0 0 chr4_random 10649365 10649394 -8202419 + AT_rich Low_complexity Low_complexity 1 29 0 200 61 0 30 chr4_random 10652009 10652042 -8199771 - L2 LINE L2 -5 3308 3277 339 299 30 22 chr4_random 10652212 10652346 -8199467 + MLT1I LTR MaLR 72 206 -203 14631 59 2 3 chr4_random 10652490 10655170 -8196643 - L1PA5 LINE L1 -4 6150 3479 920 105 7 7 chr4_random 10655170 10655323 -8196490 - L1PA5 LINE L1 -2872 3274 3122 5672 11 0 0 chr4_random 10655340 10655983 -8195830 - L1HS LINE L1 -1 6154 5512 2265 7 0 0 chr4_random 10655981 10656366 -8195447 + L1P1 LINE L1 5126 5510 -645 * 21559 97 8 25 chr4_random 10656364 10657656 -8194157 - L1PA5 LINE L1 -3007 3139 1827 2073 42 4 0 chr4_random 10657656 10657915 -8193898 + L1PA4 LINE L1 5893 6152 -3 21559 97 8 25 chr4_random 10657915 10659803 -8192010 - L1PA5 LINE L1 -4319 1827 12 442 339 105 44 chr4_random 10660033 10660664 -8191149 + L2 LINE L2 2152 2820 -494 21 0 0 0 chr4_random 10660826 10660847 -8190966 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr4_random 10661224 10661248 -8190565 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1278 283 119 46 chr4_random 10661249 10661785 -8190028 + Zaphod DNA AcHobo 32 637 -3394 1825 200 22 100 chr4_random 10661785 10662386 -8189427 + MLT2B3 LTR ERVL 1 554 0 1278 283 119 46 chr4_random 10662386 10662581 -8189232 + Zaphod DNA AcHobo 637 816 -3215 70 68 0 0 chr4_random 10662590 10662723 -8189090 + AT_rich Low_complexity Low_complexity 1 133 0 1170 223 107 15 chr4_random 10662803 10663206 -8188607 + Zaphod DNA AcHobo 3591 4030 -1 2338 208 18 20 chr4_random 10663326 10663825 -8187988 + MLT2B2 LTR ERVL 11 508 -7 448 39 48 29 chr4_random 10663938 10664041 -8187772 + (TA)n Simple_repeat Simple_repeat 2 106 0 826 301 64 0 chr4_random 10664170 10664419 -8187394 + LTR16A LTR ERVL 173 437 -13 3709 158 13 0 chr4_random 10664817 10665916 -8185897 + L1PB1 LINE L1 4683 5791 -360 266 218 8 32 chr4_random 10665934 10666058 -8185755 + (CATA)n Simple_repeat Simple_repeat 2 122 0 258 32 0 0 chr4_random 10666064 10666095 -8185718 + (TG)n Simple_repeat Simple_repeat 1 31 0 2373 109 3 6 chr4_random 10666095 10666454 -8185359 + L1PB1 LINE L1 5794 6151 0 21 0 0 0 chr4_random 10666514 10666535 -8185278 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr4_random 10666585 10666623 -8185190 + AT_rich Low_complexity Low_complexity 1 38 0 1488 254 51 20 chr4_random 10666870 10667483 -8184330 + MER114 LTR ERV 17 648 0 21 0 0 0 chr4_random 10667647 10667668 -8184145 + AT_rich Low_complexity Low_complexity 1 21 0 3296 271 43 43 chr4_random 10667768 10668961 -8182852 - L1MC4a LINE L1 -6 7802 6607 234 62 0 0 chr4_random 10668961 10668993 -8182820 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 3296 271 43 43 chr4_random 10668993 10669130 -8182683 - L1MC4a LINE L1 -1200 6608 6472 1071 189 5 5 chr4_random 10669157 10669353 -8182460 - AluSg/x SINE Alu -17 295 100 424 248 28 0 chr4_random 10669357 10669466 -8182347 - L1MC4a LINE L1 -1328 6480 6369 24 0 0 0 chr4_random 10669743 10669767 -8182046 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr4_random 10669828 10669857 -8181956 + AT_rich Low_complexity Low_complexity 1 29 0 1615 188 27 62 chr4_random 10670369 10670444 -8181369 + MLT1B LTR MaLR 1 77 -313 794 212 77 111 chr4_random 10670444 10670822 -8180991 + MLT1A1 LTR MaLR 1 365 0 1615 188 27 62 chr4_random 10670822 10671150 -8180663 + MLT1B LTR MaLR 77 390 0 25 0 0 0 chr4_random 10671935 10671960 -8179853 + AT_rich Low_complexity Low_complexity 1 25 0 252 348 37 37 chr4_random 10672334 10672495 -8179318 - MIR SINE MIR -94 168 8 22 35 0 0 chr4_random 10672615 10672644 -8179169 + AT_rich Low_complexity Low_complexity 1 29 0 1884 153 7 0 chr4_random 10672951 10673251 -8178562 - AluSx SINE Alu -10 302 1 232 321 7 57 chr4_random 10673784 10673924 -8177889 - L2 LINE L2 -927 2387 2255 912 253 5 15 chr4_random 10674055 10674257 -8177556 - LTR40a LTR ERVL -26 493 294 946 265 59 25 chr4_random 10674257 10674644 -8177169 + L1ME1 LINE L1 5740 6143 -23 1553 223 57 37 chr4_random 10674644 10675102 -8176711 + MLT1C LTR MaLR 1 467 0 946 265 59 25 chr4_random 10675102 10675122 -8176691 + L1ME1 LINE L1 6143 6161 -5 475 276 13 20 chr4_random 10675502 10675654 -8176159 - MLT1J2 LTR MaLR -246 204 54 21 0 0 0 chr4_random 10676312 10676333 -8175480 + AT_rich Low_complexity Low_complexity 1 21 0 29 47 0 0 chr4_random 10676978 10677021 -8174792 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr4_random 10677150 10677181 -8174632 + AT_rich Low_complexity Low_complexity 1 31 0 211 400 94 0 chr4_random 10677256 10677416 -8174397 + MIR SINE MIR 52 226 -36 3020 83 18 0 chr4_random 10677836 10678232 -8173581 + MLT2A1 LTR ERVL 1 403 -41 340 96 0 9 chr4_random 10678286 10678345 -8173468 + MLT2A1 LTR ERVL 395 443 -1 28092 88 10 11 chr4_random 10678347 10678465 -8173348 + HERVL-A1 LTR ERVL 2 119 -5535 2076 102 39 0 chr4_random 10678465 10678750 -8173063 - AluSq SINE Alu -16 297 2 28092 88 10 11 chr4_random 10678750 10682464 -8169349 + HERVL-A1 LTR ERVL 119 3828 -1826 514 272 51 29 chr4_random 10682956 10683232 -8168581 + L1ME2 LINE L1 1262 1543 -4997 24 32 0 0 chr4_random 10683257 10683288 -8168525 + AT_rich Low_complexity Low_complexity 1 31 0 312 268 52 77 chr4_random 10683351 10683545 -8168268 + L1ME2 LINE L1 1856 2044 -4677 1994 113 3 50 chr4_random 10683751 10684070 -8167743 + AluSx SINE Alu 9 312 0 373 278 15 66 chr4_random 10684178 10684376 -8167437 + L1ME2 LINE L1 5523 5710 -830 404 291 58 23 chr4_random 10684592 10684764 -8167049 - MLT1H LTR MaLR -242 307 130 982 276 71 15 chr4_random 10684854 10685342 -8166471 + L1ME2 LINE L1 5700 6224 -334 303 136 0 0 chr4_random 10686288 10686347 -8165466 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 297 0 0 0 chr4_random 10686349 10686382 -8165431 + (CA)n Simple_repeat Simple_repeat 1 33 0 28 29 0 0 chr4_random 10688976 10689011 -8162802 + AT_rich Low_complexity Low_complexity 1 35 0 1154 255 95 52 chr4_random 10689244 10689727 -8162086 - MLT1D LTR MaLR 0 505 2 695 152 0 0 chr4_random 10690330 10690442 -8161371 - HY1 scRNA scRNA 0 112 1 7763 40 1 3 chr4_random 10690684 10692417 -8159396 + L1PA3 LINE L1 4424 6155 0 195 287 85 32 chr4_random 10693201 10693295 -8158518 + MIR SINE MIR 53 151 -111 674 292 68 17 chr4_random 10693347 10693583 -8158230 - MIR SINE MIR 0 262 15 252 288 0 0 chr4_random 10693605 10693664 -8158149 + MIR SINE MIR 204 262 0 335 311 72 12 chr4_random 10695169 10695336 -8156477 - MLT1J LTR MaLR -41 470 294 791 225 38 78 chr4_random 10695386 10695897 -8155916 + L1PB4 LINE L1 690 3561 -2642 644 117 0 0 chr4_random 10695903 10695997 -8155816 + AluSg/x SINE Alu 211 304 -8 5055 210 23 6 chr4_random 10695997 10697845 -8153968 + L1PB4 LINE L1 3557 5575 -638 192 40 0 0 chr4_random 10697845 10697870 -8153943 + (CA)n Simple_repeat Simple_repeat 2 26 0 5055 210 23 6 chr4_random 10697870 10698519 -8153294 + L1PB4 LINE L1 5575 6211 -2 738 272 147 59 chr4_random 10698907 10699415 -8152398 + L2 LINE L2 2671 3212 -101 1398 213 12 3 chr4_random 10699415 10699734 -8152079 - L1MA6 LINE L1 -1 6299 5978 738 272 147 59 chr4_random 10699734 10699837 -8151976 + L2 LINE L2 3212 3305 -8 21 0 0 0 chr4_random 10701244 10701265 -8150548 + AT_rich Low_complexity Low_complexity 1 21 0 4164 150 45 13 chr4_random 10701959 10702721 -8149092 - L1PA16 LINE L1 -1 6165 5380 296 198 0 12 chr4_random 10702907 10702988 -8148825 + CT-rich Low_complexity Low_complexity 1 80 0 180 261 0 0 chr4_random 10702995 10703060 -8148753 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 447 194 24 12 chr4_random 10703322 10703492 -8148321 + (TA)n Simple_repeat Simple_repeat 2 173 0 217 373 134 0 chr4_random 10704598 10704732 -8147081 + MIR SINE MIR 5 156 -106 259 296 257 7 chr4_random 10704832 10704984 -8146829 - MIR SINE MIR 0 262 73 1456 272 75 52 chr4_random 10705741 10706546 -8145267 - L1ME2 LINE L1 -9 6224 5402 655 314 99 62 chr4_random 10706559 10707289 -8144524 - L1ME2 LINE L1 -4751 1645 889 1455 127 113 67 chr4_random 10707397 10707680 -8144133 - AluSg SINE Alu -14 296 1 326 402 86 0 chr4_random 10708066 10708300 -8143513 - L1ME2 LINE L1 -6013 383 130 1064 279 100 7 chr4_random 10708595 10709014 -8142799 + MLT1C LTR MaLR 10 467 0 251 288 119 22 chr4_random 10709093 10709319 -8142494 - L1ME LINE L1 -259 5862 5615 2254 218 9 98 chr4_random 10710061 10710586 -8141227 + L1 LINE L1 4526 4943 -1203 2104 122 10 0 chr4_random 10710586 10710882 -8140931 + AluSc SINE Alu 1 299 -10 2254 218 9 98 chr4_random 10710882 10711238 -8140575 + L1 LINE L1 4943 5329 -817 1463 182 12 0 chr4_random 10711338 10711596 -8140217 + AluSc SINE Alu 39 299 -10 4792 170 59 14 chr4_random 10711611 10712722 -8139091 + L1PA16 LINE L1 5002 6157 -9 21 0 0 0 chr4_random 10712922 10712943 -8138870 + AT_rich Low_complexity Low_complexity 1 21 0 486 269 254 0 chr4_random 10714110 10714307 -8137506 - MIR SINE MIR -4 258 12 2062 143 15 1 chr4_random 10714574 10715031 -8136782 + MER84 LTR ERVI 1 507 0 180 0 0 0 chr4_random 10715432 10715452 -8136361 + (T)n Simple_repeat Simple_repeat 1 20 0 305 311 25 0 chr4_random 10715805 10715924 -8135889 + MIR SINE MIR 141 262 0 458 309 170 8 chr4_random 10716585 10716844 -8134969 - MLT1J1 LTR MaLR -128 318 18 23 33 0 0 chr4_random 10717595 10717625 -8134188 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4_random 10718043 10718064 -8133749 + AT_rich Low_complexity Low_complexity 1 21 0 472 322 65 25 chr4_random 10718321 10718566 -8133247 + MIR SINE MIR 7 261 -1 240 57 0 0 chr4_random 10719257 10719292 -8132521 - Alu SINE Alu -267 35 1 233 289 39 10 chr4_random 10719644 10719748 -8132065 - L1M4 LINE L1 -2228 3918 3812 400 185 43 0 chr4_random 10719789 10719915 -8131898 - L1MD3 LINE L1 0 8042 7914 513 281 112 12 chr4_random 10719969 10720307 -8131506 + L1M4 LINE L1 2890 3261 -2885 477 266 112 26 chr4_random 10720355 10720667 -8131146 - L1M4 LINE L1 -3267 2879 2541 5613 172 27 67 chr4_random 10720670 10721024 -8130789 - L1PB2 LINE L1 -3 6148 5782 2037 152 0 0 chr4_random 10721024 10721333 -8130480 - AluSq SINE Alu -2 311 3 5613 172 27 67 chr4_random 10721333 10723438 -8128375 - L1PB2 LINE L1 -369 5782 3795 463 309 16 0 chr4_random 10723447 10723641 -8128172 - L1M4 LINE L1 -3615 2531 2335 406 312 18 24 chr4_random 10723687 10723857 -8127956 + L1MEc LINE L1 58 226 -6170 2698 183 51 4 chr4_random 10723993 10724523 -8127290 - L1PA13 LINE L1 -1131 5015 4461 5421 130 14 8 chr4_random 10724523 10725588 -8126225 + L1PA13 LINE L1 5026 6088 -75 8164 112 34 16 chr4_random 10725689 10727039 -8124774 + L1PA7 LINE L1 483 1856 -4605 20272 102 2 6 chr4_random 10727039 10730828 -8120985 + L1PA7 LINE L1 2666 6469 0 729 323 51 49 chr4_random 10730836 10731198 -8120615 + MLT1G1 LTR MaLR 128 587 -8 233 194 0 42 chr4_random 10731271 10731343 -8120470 + GA-rich Low_complexity Low_complexity 2 70 0 342 0 0 0 chr4_random 10731400 10731438 -8120375 + (CA)n Simple_repeat Simple_repeat 2 39 0 197 143 0 41 chr4_random 10731608 10731657 -8120156 + (TCC)n Simple_repeat Simple_repeat 2 48 0 205 298 93 50 chr4_random 10731770 10731848 -8119965 + MIR SINE MIR 29 102 -160 2344 168 29 0 chr4_random 10731848 10732264 -8119549 - MSTA LTR MaLR 0 428 1 205 298 93 50 chr4_random 10732264 10732346 -8119467 + MIR SINE MIR 102 196 -66 22 35 0 0 chr4_random 10732601 10732630 -8119183 + AT_rich Low_complexity Low_complexity 1 29 0 600 376 21 15 chr4_random 10732882 10733209 -8118604 - LTR16A LTR ERVL -12 438 110 25 65 0 0 chr4_random 10735172 10735218 -8116595 + AT_rich Low_complexity Low_complexity 1 46 0 27 62 0 0 chr4_random 10735406 10735454 -8116359 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr4_random 10735905 10735929 -8115884 + AT_rich Low_complexity Low_complexity 1 24 0 215 268 71 113 chr4_random 10736928 10737096 -8114717 + MIR SINE MIR 99 259 -3 650 228 222 0 chr4_random 10737539 10737719 -8114094 - MER58A DNA MER1_type -4 220 1 333 0 0 0 chr4_random 10739789 10739826 -8111987 + (T)n Simple_repeat Simple_repeat 1 37 0 249 336 56 49 chr4_random 10739954 10740097 -8111716 + MIR SINE MIR 45 188 -74 1579 231 66 16 chr4_random 10740256 10740698 -8111115 + MLT1C LTR MaLR 1 464 -3 188 371 56 11 chr4_random 10740775 10740864 -8110949 - MIR SINE MIR -95 113 21 21 0 0 0 chr4_random 10741051 10741072 -8110741 + AT_rich Low_complexity Low_complexity 1 21 0 216 274 16 16 chr4_random 10741180 10741242 -8110571 + L2 LINE L2 3252 3313 0 21 0 0 0 chr4_random 10742210 10742231 -8109582 + AT_rich Low_complexity Low_complexity 1 21 0 2986 227 204 29 chr4_random 10742732 10743798 -8108015 - MER52C LTR ERV1 0 1278 1 1698 164 0 20 chr4_random 10744316 10744608 -8107205 - AluSx SINE Alu -26 286 1 202 340 50 63 chr4_random 10745683 10746001 -8105812 - L2 LINE L2 -8 3305 2992 180 303 127 35 chr4_random 10746266 10746408 -8105405 - L2 LINE L2 -683 2631 2477 276 364 80 7 chr4_random 10746522 10746673 -8105140 - L2 LINE L2 -1081 2233 2072 1657 198 24 27 chr4_random 10747027 10747400 -8104413 + MLT1A2 LTR MaLR 1 372 -2 239 304 70 55 chr4_random 10747580 10747892 -8103921 - HAL1 LINE L1 -412 2095 1779 213 161 0 71 chr4_random 10748261 10748317 -8103496 + T-rich Low_complexity Low_complexity 3 54 0 905 192 41 0 chr4_random 10748750 10748922 -8102891 - MER58A DNA MER1_type -8 216 38 21 57 0 0 chr4_random 10751136 10751171 -8100642 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr4_random 10751197 10751225 -8100588 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr4_random 10751310 10751353 -8100460 + AT_rich Low_complexity Low_complexity 1 43 0 2122 129 0 16 chr4_random 10751788 10752105 -8099708 - AluSx SINE Alu 0 312 1 315 0 0 0 chr4_random 10754563 10754598 -8097215 + (TG)n Simple_repeat Simple_repeat 2 36 0 321 302 8 24 chr4_random 10755203 10755329 -8096484 - L3 LINE CR1 -299 1278 1155 942 288 78 35 chr4_random 10755363 10755849 -8095964 - L1ME1 LINE L1 -50 6116 5610 21 57 0 0 chr4_random 10756575 10756610 -8095203 + AT_rich Low_complexity Low_complexity 1 35 0 2355 97 0 3 chr4_random 10758732 10759043 -8092770 + AluSx SINE Alu 3 312 0 245 75 25 0 chr4_random 10759224 10759264 -8092549 + (TC)n Simple_repeat Simple_repeat 2 42 0 248 232 18 0 chr4_random 10759279 10759335 -8092478 + CT-rich Low_complexity Low_complexity 6 62 0 507 244 49 43 chr4_random 10759673 10759837 -8091976 - MIR SINE MIR -96 166 2 377 276 21 62 chr4_random 10759838 10759983 -8091830 - MIR SINE MIR -8 254 116 234 345 100 0 chr4_random 10761948 10762058 -8089755 + MIR3 SINE MIR 54 174 -34 229 138 190 0 chr4_random 10762426 10762484 -8089329 - Charlie8 DNA MER1_type -989 1428 1360 1374 173 8 17 chr4_random 10762906 10763424 -8088389 + LTR60 LTR ERV1 1 586 0 394 222 44 146 chr4_random 10763255 10763530 -8088283 + TAR1 Satellite telomeric 34 280 -1831 * 309 258 11 11 chr4_random 10763568 10763657 -8088156 + (TA)n Simple_repeat Simple_repeat 1 89 0 462 316 29 12 chr4_random 10763692 10763863 -8087950 + MLT1H1 LTR MaLR 3 176 -379 5145 156 12 24 chr4_random 10763867 10764753 -8087060 + L1P3 LINE L1 1 876 -5585 211 276 23 58 chr4_random 10764976 10765063 -8086750 - L2 LINE L2 -1 3271 3188 230 208 19 0 chr4_random 10765081 10765134 -8086679 + (TA)n Simple_repeat Simple_repeat 2 55 0 651 275 81 75 chr4_random 10765269 10765749 -8086064 - MLT1H LTR MaLR -49 500 18 212 361 113 8 chr4_random 10765900 10766033 -8085780 + L2 LINE L2 3167 3313 0 2007 165 36 137 chr4_random 10766036 10766119 -8085694 + L1MB4 LINE L1 5588 5678 -502 1942 195 10 10 chr4_random 10766119 10766509 -8085304 - MLT1B LTR MaLR 0 390 1 2007 165 36 137 chr4_random 10766509 10766906 -8084907 + L1MB4 LINE L1 5678 5987 -193 2075 115 14 0 chr4_random 10766906 10767202 -8084611 - AluSp SINE Alu -13 300 1 2007 165 36 137 chr4_random 10767202 10767379 -8084434 + L1MB4 LINE L1 5987 6180 0 352 177 13 0 chr4_random 10767390 10767469 -8084344 + L1MB8 LINE L1 6093 6172 -6 4200 113 57 5 chr4_random 10767470 10768123 -8083690 - L1PA10 LINE L1 -16 6152 5466 241 160 53 13 chr4_random 10768133 10768208 -8083605 + (TTTAA)n Simple_repeat Simple_repeat 1 78 0 6879 149 20 6 chr4_random 10768209 10769574 -8082239 - L1PA10 LINE L1 -690 5484 4099 1109 331 55 21 chr4_random 10769623 10770351 -8081462 + L1PBa LINE L1 3 755 -6108 450 261 0 9 chr4_random 10770389 10770500 -8081313 + AluJo SINE Alu 117 226 -86 * 785 179 69 0 chr4_random 10770489 10770634 -8081179 + AluJb SINE Alu 154 308 -4 196 370 9 28 chr4_random 10771919 10772027 -8079786 - MIR SINE MIR -56 206 101 302 354 70 13 chr4_random 10772511 10772740 -8079073 + L2 LINE L2 2123 2364 -950 241 170 57 0 chr4_random 10773984 10774037 -8077776 - MER116 DNA Mariner 0 80 25 29 60 0 0 chr4_random 10774309 10774359 -8077454 + AT_rich Low_complexity Low_complexity 1 50 0 27 49 0 0 chr4_random 10774606 10774647 -8077166 + AT_rich Low_complexity Low_complexity 1 41 0 303 274 156 45 chr4_random 10774828 10775226 -8076587 + L1ME3A LINE L1 4957 5398 -748 207 0 0 0 chr4_random 10775238 10775261 -8076552 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 608 296 67 63 chr4_random 10775276 10775736 -8076077 + L1ME3A LINE L1 5490 5951 -219 217 109 43 0 chr4_random 10775948 10775994 -8075819 + (TA)n Simple_repeat Simple_repeat 1 48 0 303 385 117 8 chr4_random 10776041 10776290 -8075523 - L2 LINE L2 -1156 2158 1883 310 299 103 0 chr4_random 10776580 10776697 -8075116 + MER7A DNA MER2_type 4 130 -216 1247 204 67 0 chr4_random 10776710 10776980 -8074833 + MER7A DNA MER2_type 61 346 0 21 0 0 0 chr4_random 10777894 10777915 -8073898 + AT_rich Low_complexity Low_complexity 1 21 0 594 126 21 28 chr4_random 10778915 10779058 -8072755 + GA-rich Low_complexity Low_complexity 3 144 0 788 227 28 14 chr4_random 10779157 10779373 -8072440 - MER20 DNA MER1_type 0 219 1 21 0 0 0 chr4_random 10780370 10780391 -8071422 + AT_rich Low_complexity Low_complexity 1 21 0 1438 110 0 37 chr4_random 10782127 10782371 -8069442 - AluSc SINE Alu 0 309 85 180 97 0 0 chr4_random 10782470 10782501 -8069312 + (CA)n Simple_repeat Simple_repeat 2 32 0 33 0 0 0 chr4_random 10782658 10782691 -8069122 + AT_rich Low_complexity Low_complexity 1 33 0 2069 85 0 0 chr4_random 10782856 10783192 -8068621 - AluY SINE Alu 0 336 1 358 408 14 14 chr4_random 10783414 10783561 -8068252 - MIR SINE MIR -115 147 1 315 0 0 0 chr4_random 10784165 10784200 -8067613 + (A)n Simple_repeat Simple_repeat 1 35 0 314 28 0 0 chr4_random 10785340 10785376 -8066437 + (A)n Simple_repeat Simple_repeat 1 36 0 2027 148 0 0 chr4_random 10786625 10786935 -8064878 + AluSx SINE Alu 1 310 -2 254 311 0 14 chr4_random 10787542 10787616 -8064197 + L2 LINE L2 3239 3311 -2 257 358 78 62 chr4_random 10787894 10788420 -8063393 + L2 LINE L2 2346 2883 -431 1820 158 0 13 chr4_random 10788420 10788724 -8063089 - AluSq SINE Alu -13 300 1 257 358 78 62 chr4_random 10788724 10788747 -8063066 + L2 LINE L2 2883 2904 -410 611 268 41 64 chr4_random 10789477 10789697 -8062116 - MIR SINE MIR -44 218 4 1493 184 7 0 chr4_random 10789899 10790181 -8061632 - L1MB1 LINE L1 -1 6167 5884 200 189 27 0 chr4_random 10792046 10792083 -8059730 + CT-rich Low_complexity Low_complexity 1 38 0 213 39 0 0 chr4_random 10792098 10792124 -8059689 + (TTTTG)n Simple_repeat Simple_repeat 3 28 0 1770 272 59 22 chr4_random 10792278 10793086 -8058727 - L1ME3 LINE L1 -2 6160 5323 366 307 66 17 chr4_random 10793244 10793485 -8058328 - L1ME3 LINE L1 -1031 5115 4863 348 64 0 0 chr4_random 10793648 10793695 -8058118 + (CA)n Simple_repeat Simple_repeat 2 48 0 209 399 76 18 chr4_random 10793791 10793984 -8057829 + L2 LINE L2 2667 2882 -432 1236 263 22 40 chr4_random 10793984 10794387 -8057426 - MSTD LTR MaLR 0 396 1 209 399 76 18 chr4_random 10794387 10794469 -8057344 + L2 LINE L2 2882 2958 -356 32 26 0 0 chr4_random 10794741 10794780 -8057033 + AT_rich Low_complexity Low_complexity 1 39 0 26 30 0 0 chr4_random 10796896 10796929 -8054884 + AT_rich Low_complexity Low_complexity 1 33 0 723 101 0 0 chr4_random 10797152 10797251 -8054562 + HY3 scRNA scRNA 2 100 -1 206 350 61 49 chr4_random 10797660 10797823 -8053990 - MIR3 SINE MIR -39 169 5 201 380 18 18 chr4_random 10797832 10797995 -8053818 - L2 LINE L2 -2 3311 3149 571 200 19 0 chr4_random 10798039 10798144 -8053669 + U6 snRNA snRNA 1 107 0 3125 233 43 14 chr4_random 10798145 10799073 -8052740 + L1M4 LINE L1 3946 4900 -1246 37 93 0 0 chr4_random 10799088 10799195 -8052618 + AT_rich Low_complexity Low_complexity 1 107 0 301 279 47 0 chr4_random 10799207 10799293 -8052520 - MLT1J LTR MaLR -313 198 109 339 89 0 0 chr4_random 10799349 10799405 -8052408 + (TG)n Simple_repeat Simple_repeat 2 57 0 280 300 104 87 chr4_random 10799453 10799777 -8052036 + L2 LINE L2 2724 3068 -245 3897 189 45 43 chr4_random 10800295 10801271 -8050542 - L1MA9 LINE L1 0 6312 5335 195 100 0 0 chr4_random 10803087 10803117 -8048696 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 6198 57 20 0 chr4_random 10803321 10804115 -8047698 - L1PA7 LINE L1 -4 6150 5341 225 0 0 0 chr4_random 10804453 10804478 -8047335 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 3068 9 0 0 chr4_random 10804478 10804822 -8046991 - L1PA2 LINE L1 -11 6144 5801 1744 134 13 13 chr4_random 10804846 10805151 -8046662 + L1MA9 LINE L1 5924 6228 -84 186 147 44 0 chr4_random 10806034 10806102 -8045711 + (TA)n Simple_repeat Simple_repeat 1 71 0 21 0 0 0 chr4_random 10807146 10807167 -8044646 + AT_rich Low_complexity Low_complexity 1 21 0 29014 61 4 4 chr4_random 10807308 10811944 -8039869 + L1PA5 LINE L1 1521 6152 -2 204 135 0 0 chr4_random 10812399 10812436 -8039377 + (TTTTC)n Simple_repeat Simple_repeat 3 39 0 1139 249 85 49 chr4_random 10812440 10812885 -8038928 - MLT2B1 LTR ERVL -57 463 3 337 291 78 0 chr4_random 10812890 10813211 -8038602 + L1MEc LINE L1 2171 2479 -3736 332 298 50 8 chr4_random 10814869 10814990 -8036823 + Charlie8 DNA MER1_type 74 199 -2218 216 209 0 0 chr4_random 10815561 10815604 -8036209 + (CATA)n Simple_repeat Simple_repeat 2 44 0 519 323 26 16 chr4_random 10816061 10816250 -8035563 + MIR3 SINE MIR 2 192 -16 368 231 239 22 chr4_random 10817430 10817564 -8034249 - MIR3 SINE MIR -9 199 37 21 0 0 0 chr4_random 10818386 10818407 -8033406 + AT_rich Low_complexity Low_complexity 1 21 0 304 147 147 0 chr4_random 10819476 10819544 -8032269 + MADE1 DNA Mariner 1 78 -2 23 54 0 0 chr4_random 10820045 10820082 -8031731 + AT_rich Low_complexity Low_complexity 1 37 0 205 333 69 0 chr4_random 10820757 10820829 -8030984 - L2 LINE L2 -8 3305 3229 201 311 47 68 chr4_random 10820847 10820995 -8030818 - L2 LINE L2 -596 2718 2574 255 133 0 0 chr4_random 10821260 10821305 -8030508 + (TA)n Simple_repeat Simple_repeat 2 46 0 324 300 0 0 chr4_random 10821307 10821397 -8030416 + L1MC4 LINE L1 6614 6703 -1339 324 303 0 0 chr4_random 10821355 10821444 -8030369 - L1MC4 LINE L1 -1339 6703 6615 3574 130 5 18 chr4_random 10821547 10822115 -8029698 + HERVL-A1 LTR ERVL 5094 5654 0 2605 106 3 5 chr4_random 10822115 10822483 -8029330 + MLT2A1 LTR ERVL 1 367 -77 225 120 0 80 chr4_random 10822459 10822509 -8029304 + LTR66 LTR ERVL 394 439 -171 * 234 113 0 75 chr4_random 10822527 10822580 -8029233 + LTR66 LTR ERVL 394 442 -168 267 168 0 46 chr4_random 10822581 10822712 -8029101 + (TA)n Simple_repeat Simple_repeat 2 126 0 367 109 0 11 chr4_random 10822712 10822733 -8029080 + MLT2A1 LTR ERVL 389 409 -35 261 0 0 0 chr4_random 10822733 10822762 -8029051 + (CA)n Simple_repeat Simple_repeat 2 30 0 367 109 0 11 chr4_random 10822762 10822805 -8029008 + MLT2A1 LTR ERVL 409 444 0 270 116 0 0 chr4_random 10824235 10824278 -8027535 + (CA)n Simple_repeat Simple_repeat 2 44 0 183 387 45 39 chr4_random 10824335 10824490 -8027323 - MIR SINE MIR -82 180 25 1655 190 42 25 chr4_random 10825104 10825462 -8026351 + THE1B LTR MaLR 1 364 0 25 31 0 0 chr4_random 10825469 10825501 -8026312 + AT_rich Low_complexity Low_complexity 1 32 0 304 226 19 123 chr4_random 10825979 10826085 -8025728 + MER5A DNA MER1_type 95 189 0 276 277 71 18 chr4_random 10826293 10826405 -8025408 + L2 LINE L2 2363 2480 -834 641 191 158 101 chr4_random 10826572 10826927 -8024886 - L1ME2 LINE L1 -13 6151 5777 500 313 47 27 chr4_random 10827058 10827314 -8024499 + MIR SINE MIR 2 262 0 477 333 52 41 chr4_random 10827532 10827901 -8023912 + MLT1J LTR MaLR 1 373 -138 3954 116 8 5 chr4_random 10828992 10829598 -8022215 + L1PA10 LINE L1 5548 6155 -13 26 0 0 0 chr4_random 10830377 10830403 -8021410 + AT_rich Low_complexity Low_complexity 1 26 0 235 193 91 34 chr4_random 10830403 10830491 -8021322 - L1MC4 LINE L1 -4 8038 7946 230 276 0 23 chr4_random 10830498 10830585 -8021228 + (TA)n Simple_repeat Simple_repeat 2 86 0 243 296 17 26 chr4_random 10830585 10830700 -8021113 - L1MC4 LINE L1 -124 7918 7805 1474 208 176 27 chr4_random 10830700 10831142 -8020671 - MLT2B2 LTR ERVL -7 508 1 2421 192 94 51 chr4_random 10831156 10831960 -8019853 - ERVL LTR ERVL -9 5645 4857 2157 204 87 2 chr4_random 10831967 10832418 -8019395 - ERVL LTR ERVL -4680 1084 596 255 170 0 0 chr4_random 10832433 10832480 -8019333 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 351 0 0 0 chr4_random 10832480 10832519 -8019294 + (TG)n Simple_repeat Simple_repeat 2 40 0 282 154 90 26 chr4_random 10832524 10832602 -8019211 - L1MC4a LINE L1 -1312 6496 6414 1527 169 36 24 chr4_random 10832718 10833049 -8018764 - L1MC3 LINE L1 -163 7622 7288 3715 148 25 49 chr4_random 10833049 10833635 -8018178 + MER50 LTR ERV1 1 567 -167 2184 96 38 0 chr4_random 10833635 10833927 -8017886 - AluSp SINE Alu -10 303 1 3715 148 25 49 chr4_random 10833927 10834069 -8017744 + MER50 LTR ERV1 567 711 -23 2130 209 45 65 chr4_random 10834069 10834711 -8017102 - L1MC3 LINE L1 -493 7292 6664 246 235 12 0 chr4_random 10834954 10835035 -8016778 + (TA)n Simple_repeat Simple_repeat 1 82 0 1482 233 52 31 chr4_random 10835044 10835490 -8016323 + MLT1D LTR MaLR 6 460 -45 2105 228 29 9 chr4_random 10835490 10836035 -8015778 - L1MC3 LINE L1 -1569 6216 5661 2857 108 2 10 chr4_random 10836153 10836560 -8015253 + MLT2A1 LTR ERVL 1 404 -40 413 136 45 8 chr4_random 10836560 10836692 -8015121 + (TA)n Simple_repeat Simple_repeat 2 138 0 37514 95 12 2 chr4_random 10836693 10841742 -8010071 + HERVL-A1 LTR ERVL 72 5168 -486 1857 171 54 20 chr4_random 10841859 10842210 -8009603 + MLT1A1 LTR MaLR 1 363 -2 428 297 19 0 chr4_random 10842247 10842402 -8009411 - L1MD1 LINE L1 -8 6234 6077 201 74 0 0 chr4_random 10842431 10842458 -8009355 + (TG)n Simple_repeat Simple_repeat 2 28 0 278 277 0 48 chr4_random 10842458 10842541 -8009272 - L1MD2 LINE L1 -231 6128 6050 490 159 40 79 chr4_random 10843372 10843498 -8008315 + L1M1 LINE L1 14 134 -7431 7042 234 12 9 chr4_random 10843502 10844948 -8006865 + L1MA2 LINE L1 17 1467 -6098 234 169 14 84 chr4_random 10844953 10845024 -8006789 + L1MA2 LINE L1 4604 4669 -2896 6409 186 33 9 chr4_random 10845131 10847785 -8004028 + L1MA2 LINE L1 4809 7564 -159 3349 120 16 4 chr4_random 10847785 10848293 -8003520 - MER75 DNA T2_type 0 514 1 6409 186 33 9 chr4_random 10848293 10848457 -8003356 + L1MA2 LINE L1 7564 7723 0 13149 189 33 34 chr4_random 10848499 10851307 -8000506 + L1M1 LINE L1 181 2992 -4573 1884 141 6 39 chr4_random 10851307 10851619 -8000194 + AluSx SINE Alu 1 302 -10 13149 189 33 34 chr4_random 10851619 10851683 -8000130 + L1M1 LINE L1 2992 3055 -4510 2278 189 12 2 chr4_random 10851683 10852107 -7999706 - MSTA LTR MaLR 0 428 1 13149 189 33 34 chr4_random 10852107 10855023 -7996790 + L1M1 LINE L1 3055 6821 -744 1562 150 7 33 chr4_random 10855024 10855324 -7996489 + L1MA2 LINE L1 6013 6304 0 1926 121 22 0 chr4_random 10855729 10856029 -7995784 - AluSg SINE Alu 0 307 2 222 174 0 0 chr4_random 10856279 10856325 -7995488 + CT-rich Low_complexity Low_complexity 1 46 0 863 69 7 28 chr4_random 10856325 10856469 -7995344 + (TTCC)n Simple_repeat Simple_repeat 3 143 0 204 217 33 50 chr4_random 10856754 10856814 -7994999 - L2 LINE L2 -13 3300 3242 2421 63 3 35 chr4_random 10856972 10857291 -7994522 - AluY SINE Alu 0 311 3 253 255 32 32 chr4_random 10857764 10857858 -7993955 - L3 LINE CR1 -100 1477 1384 230 355 48 24 chr4_random 10857863 10857987 -7993826 - L2 LINE L2 -1 3271 3145 483 349 110 38 chr4_random 10858004 10858451 -7993362 - L3 LINE CR1 -216 1361 883 23 68 0 0 chr4_random 10859319 10859363 -7992450 + AT_rich Low_complexity Low_complexity 1 44 0 268 395 67 38 chr4_random 10859820 10860162 -7991651 - L2 LINE L2 -9 3263 2912 193 279 0 0 chr4_random 10861502 10861545 -7990268 - L3 LINE CR1 -665 912 870 266 330 17 17 chr4_random 10861921 10862036 -7989777 - MER94 DNA DNA -16 118 4 301 391 36 20 chr4_random 10862062 10862315 -7989498 + L2 LINE L2 2808 3064 -208 189 0 0 0 chr4_random 10863285 10863306 -7988507 + (A)n Simple_repeat Simple_repeat 1 21 0 375 179 33 7 chr4_random 10863398 10863549 -7988264 + (TA)n Simple_repeat Simple_repeat 1 155 0 5513 133 21 11 chr4_random 10863827 10864721 -7987092 - L1MA3 LINE L1 0 6305 5403 1556 224 148 81 chr4_random 10864768 10865575 -7986238 - MER21B LTR ERV1 -2 861 1 276 214 0 0 chr4_random 10866064 10866120 -7985693 - L1MC4 LINE L1 -137 7905 7850 228 258 0 0 chr4_random 10866254 10866320 -7985493 - L1MC4 LINE L1 -953 7089 7024 1514 238 31 79 chr4_random 10866329 10866934 -7984879 - L1MC4 LINE L1 -998 7044 6469 263 232 0 18 chr4_random 10867886 10867942 -7983871 + GA-rich Low_complexity Low_complexity 3 57 0 21 0 0 0 chr4_random 10868395 10868416 -7983397 + AT_rich Low_complexity Low_complexity 1 21 0 277 235 15 0 chr4_random 10868911 10868979 -7982834 - MLT1G1 LTR MaLR 0 595 527 19463 188 30 15 chr4_random 10869530 10872978 -7978835 + L1MA3 LINE L1 7 3555 -4010 351 0 0 0 chr4_random 10872978 10873017 -7978796 + (CA)n Simple_repeat Simple_repeat 2 40 0 19463 188 30 15 chr4_random 10873017 10874368 -7977445 + L1MA3 LINE L1 3555 4884 -2681 320 125 0 18 chr4_random 10874368 10874424 -7977389 - MLT2A2 LTR ERVL 0 453 399 228 111 0 56 chr4_random 10874391 10874445 -7977368 - LTR66 LTR ERVL -162 448 398 * 195 129 0 0 chr4_random 10874450 10874481 -7977332 + (TA)n Simple_repeat Simple_repeat 1 31 0 303 222 0 44 chr4_random 10874499 10874589 -7977224 + L1MC4 LINE L1 6614 6699 -1343 2764 95 26 3 chr4_random 10874603 10874993 -7976820 - MLT2A1 LTR ERVL -45 399 1 8201 178 21 15 chr4_random 10874993 10877818 -7973995 + L1MA3 LINE L1 4880 7724 0 21 0 0 0 chr4_random 10877818 10877839 -7973974 + AT_rich Low_complexity Low_complexity 1 21 0 2157 134 8 16 chr4_random 10877949 10878314 -7973499 + L1PB2 LINE L1 5788 6149 -2 1190 267 108 44 chr4_random 10878326 10879342 -7972471 + L1ME3A LINE L1 5042 6161 -9 2271 100 3 0 chr4_random 10879871 10880171 -7971642 - AluSq SINE Alu -12 301 1 1668 196 10 3 chr4_random 10881498 10881794 -7970019 + AluJo SINE Alu 1 298 -14 280 314 0 12 chr4_random 10881905 10881991 -7969822 + AluJ/FRAM SINE Alu 214 298 -4 36 53 0 0 chr4_random 10882048 10882105 -7969708 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr4_random 10882298 10882321 -7969492 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr4_random 10882617 10882638 -7969175 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr4_random 10882679 10882704 -7969109 + AT_rich Low_complexity Low_complexity 1 25 0 250 366 65 45 chr4_random 10882836 10883128 -7968685 + LTR16A LTR ERVL 105 402 -48 532 326 61 14 chr4_random 10883435 10883729 -7968084 + HERV16 LTR ERVL 345 652 -4344 383 302 59 76 chr4_random 10884194 10884548 -7967265 + HERV16 LTR ERVL 1260 1607 -4157 798 94 39 0 chr4_random 10884673 10884800 -7967013 + L1MA9 LINE L1 6181 6312 0 1257 170 27 9 chr4_random 10884824 10885047 -7966766 + AluJb SINE Alu 86 312 0 189 0 0 0 chr4_random 10885241 10885262 -7966551 + (A)n Simple_repeat Simple_repeat 1 21 0 1708 322 77 71 chr4_random 10885269 10886519 -7965294 + HERV16 LTR ERVL 1665 2927 -2145 2477 62 0 0 chr4_random 10886519 10886828 -7964985 - AluY SINE Alu -2 309 1 1708 322 77 71 chr4_random 10886828 10887066 -7964747 + HERV16 LTR ERVL 2927 3162 -1910 279 224 0 0 chr4_random 10887250 10887326 -7964487 - L1M4 LINE L1 -3637 2509 2434 23 33 0 0 chr4_random 10887623 10887653 -7964160 + AT_rich Low_complexity Low_complexity 1 30 0 1621 129 159 9 chr4_random 10888032 10888358 -7963455 - THE1C LTR MaLR 0 375 1 1674 164 63 0 chr4_random 10888538 10888807 -7963006 - AluSx SINE Alu -26 286 1 234 376 47 39 chr4_random 10889684 10889942 -7961871 + L2 LINE L2 2950 3209 -104 287 301 0 16 chr4_random 10890048 10890161 -7961652 + GA-rich Low_complexity Low_complexity 1 111 0 1511 249 121 26 chr4_random 10890241 10890736 -7961077 - MLT1F LTR MaLR 0 542 1 1858 149 13 7 chr4_random 10891257 10891566 -7960247 - AluSx SINE Alu -1 311 1 594 246 0 0 chr4_random 10891994 10892136 -7959677 - MLT1-int LTR MaLR -765 606 465 844 286 90 56 chr4_random 10892485 10893006 -7958807 - MLT1F LTR MaLR -3 539 1 314 186 12 0 chr4_random 10893153 10893239 -7958574 + (TA)n Simple_repeat Simple_repeat 2 88 0 198 71 0 0 chr4_random 10893241 10893269 -7958544 + (TG)n Simple_repeat Simple_repeat 1 28 0 1801 162 4 0 chr4_random 10893269 10893547 -7958266 - AluSx SINE Alu -31 281 3 1739 170 53 0 chr4_random 10894620 10894903 -7956910 - AluJo SINE Alu -14 298 1 24 0 0 0 chr4_random 10895019 10895043 -7956770 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr4_random 10895980 10896002 -7955811 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr4_random 10897799 10897828 -7953985 + AT_rich Low_complexity Low_complexity 1 29 0 337 355 37 19 chr4_random 10897963 10898177 -7953636 + MLT1L LTR MaLR 40 257 -358 375 349 23 0 chr4_random 10898267 10898439 -7953374 + L2 LINE L2 2582 2757 -557 28 71 0 0 chr4_random 10898682 10898738 -7953075 + AT_rich Low_complexity Low_complexity 1 56 0 1388 288 62 40 chr4_random 10899444 10900492 -7951321 - L1ME3A LINE L1 -48 6402 5327 428 220 133 7 chr4_random 10900567 10900717 -7951096 - MER3 DNA MER1_type -11 198 30 769 294 106 39 chr4_random 10900754 10901600 -7950213 - L1ME3A LINE L1 -1198 5228 4326 569 308 152 9 chr4_random 10901733 10902068 -7949745 + LTR16C LTR ERVL 106 488 -3 563 298 173 0 chr4_random 10902073 10902362 -7949451 - L1ME3A LINE L1 -2123 4303 3965 730 237 56 40 chr4_random 10902389 10902448 -7949365 - MER67D LTR ERV1 0 514 457 2272 109 0 0 chr4_random 10902448 10902750 -7949063 - AluSx SINE Alu -10 302 1 730 237 56 40 chr4_random 10902750 10902939 -7948874 - MER67D LTR ERV1 -57 457 262 1095 191 179 28 chr4_random 10903191 10903696 -7948117 + LTR29 LTR ERV1 1 622 0 521 280 91 46 chr4_random 10903751 10904283 -7947530 - L1MCa LINE L1 -4689 1918 1173 1196 233 98 35 chr4_random 10904433 10904710 -7947103 - MSTD LTR MaLR -1 395 137 266 0 0 29 chr4_random 10904710 10904745 -7947068 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 2006 111 0 31 chr4_random 10904745 10905033 -7946780 - AluSx SINE Alu -33 279 1 1196 233 98 35 chr4_random 10905033 10905123 -7946690 - MSTD LTR MaLR -258 138 4 412 300 18 0 chr4_random 10905257 10905367 -7946446 - MER92B LTR ERV1 -524 112 1 3733 197 180 31 chr4_random 10907039 10908149 -7943664 - MER52A LTR ERV1 -392 1363 2 395 345 24 10 chr4_random 10908172 10908381 -7943432 - L2 LINE L2 -884 2430 2219 21 0 0 0 chr4_random 10908591 10908612 -7943201 + AT_rich Low_complexity Low_complexity 1 21 0 979 172 42 0 chr4_random 10909610 10909825 -7941988 + L1MA9 LINE L1 6089 6312 0 23 0 0 0 chr4_random 10910180 10910203 -7941610 + AT_rich Low_complexity Low_complexity 1 23 0 180 259 0 74 chr4_random 10910330 10910384 -7941429 - L2 LINE L2 0 3272 3223 5626 170 48 6 chr4_random 10910393 10912484 -7939329 - L1MA3 LINE L1 0 7724 5555 9315 219 39 22 chr4_random 10912490 10915129 -7936684 - L1MA3 LINE L1 -2327 5238 2646 561 119 0 0 chr4_random 10915129 10915230 -7936583 + (TA)n Simple_repeat Simple_repeat 1 101 0 9315 219 39 22 chr4_random 10915230 10917054 -7934759 - L1MA3 LINE L1 -4919 2646 16 986 338 85 32 chr4_random 10917060 10917862 -7933951 - L2 LINE L2 -42 3271 2427 1770 145 6 43 chr4_random 10917944 10918303 -7933510 - MER4A LTR ERV1 0 664 261 601 125 10 10 chr4_random 10918305 10918401 -7933412 - MER4A LTR ERV1 -568 96 1 1562 327 268 20 chr4_random 10918544 10919288 -7932525 - L2 LINE L2 -905 2409 1851 1727 171 29 29 chr4_random 10919288 10919663 -7932150 + THE1C LTR MaLR 1 375 0 1562 327 268 20 chr4_random 10919663 10920204 -7931609 - L2 LINE L2 -1463 1851 1445 300 286 154 11 chr4_random 10920204 10920386 -7931427 + MER3 DNA MER1_type 2 209 0 1562 327 268 20 chr4_random 10920386 10920969 -7930844 - L2 LINE L2 -1869 1445 76 324 302 127 63 chr4_random 10921765 10922228 -7929585 + L2 LINE L2 1986 2478 -836 22 88 0 0 chr4_random 10922676 10922733 -7929080 + AT_rich Low_complexity Low_complexity 1 57 0 1960 136 3 0 chr4_random 10923134 10923421 -7928392 - AluSq SINE Alu -25 288 1 1609 212 83 19 chr4_random 10923478 10923841 -7927972 - MSTD LTR MaLR -10 386 1 1795 64 5 0 chr4_random 10924013 10924231 -7927582 - AluSp SINE Alu -14 299 81 572 339 71 4 chr4_random 10925037 10925276 -7926537 + MIR SINE MIR 8 262 0 31 26 0 0 chr4_random 10925924 10925962 -7925851 + AT_rich Low_complexity Low_complexity 1 38 0 238 333 57 29 chr4_random 10926537 10926642 -7925171 + MIR3 SINE MIR 9 116 -92 228 324 71 50 chr4_random 10926648 10926830 -7924983 - MIR SINE MIR -1 261 76 21 82 0 0 chr4_random 10927060 10927109 -7924704 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr4_random 10927554 10927582 -7924231 + AT_rich Low_complexity Low_complexity 1 28 0 270 359 83 6 chr4_random 10928059 10928240 -7923573 - L2 LINE L2 -2859 455 261 357 252 118 16 chr4_random 10928675 10928751 -7923062 + MIR SINE MIR 71 138 -124 564 111 0 0 chr4_random 10928751 10928841 -7922972 + L1PA8 LINE L1 6083 6172 0 357 252 118 16 chr4_random 10928841 10928891 -7922922 + MIR SINE MIR 138 210 -52 225 0 0 0 chr4_random 10928949 10928974 -7922839 + (TTTAA)n Simple_repeat Simple_repeat 3 27 0 3208 23 0 5 chr4_random 10928974 10929351 -7922462 - L1PA4 LINE L1 -6 6149 5773 2101 70 56 7 chr4_random 10929510 10929794 -7922019 + AluY SINE Alu 1 298 -13 36 40 0 0 chr4_random 10930458 10930508 -7921305 + AT_rich Low_complexity Low_complexity 1 50 0 207 289 26 88 chr4_random 10930720 10930834 -7920979 - MIR SINE MIR -76 186 80 4069 37 0 0 chr4_random 10930991 10931476 -7920337 + L1PA3 LINE L1 5668 6152 -3 293 295 57 0 chr4_random 10931596 10931701 -7920112 - L2 LINE L2 -50 3263 3153 28 0 0 0 chr4_random 10932715 10932743 -7919070 + AT_rich Low_complexity Low_complexity 1 28 0 362 86 69 0 chr4_random 10933069 10933127 -7918686 - MLT2A2 LTR ERVL 0 453 392 1764 199 47 34 chr4_random 10933148 10933345 -7918468 - MLT2A2 LTR ERVL 0 554 361 3065 114 27 7 chr4_random 10933345 10933794 -7918019 - LTR22A LTR ERVK 0 458 1 1764 199 47 34 chr4_random 10933794 10934148 -7917665 - MLT2A2 LTR ERVL -193 361 1 1482 104 0 0 chr4_random 10934148 10934359 -7917454 - HERVL-A2 LTR ERVL 0 5654 5444 260 256 119 69 chr4_random 10934366 10934526 -7917287 + MLT1J2 LTR MaLR 283 450 0 1159 279 13 72 chr4_random 10934877 10935071 -7916742 + LTR53 LTR ERVL 21 225 -294 2072 115 3 3 chr4_random 10935071 10935366 -7916447 - AluSc SINE Alu -14 295 1 1159 279 13 72 chr4_random 10935366 10935701 -7916112 + LTR53 LTR ERVL 225 519 0 22 0 0 0 chr4_random 10936649 10936671 -7915142 + AT_rich Low_complexity Low_complexity 1 22 0 1256 238 42 12 chr4_random 10937439 10937775 -7914038 + LTR52 LTR ERVL 73 418 -3 229 206 73 29 chr4_random 10937920 10937988 -7913825 + L1MCc LINE L1 17 87 -6336 2046 113 3 7 chr4_random 10938331 10938624 -7913189 - AluSq SINE Alu -19 294 3 249 305 138 23 chr4_random 10939622 10939796 -7912017 - HAL1b LINE L1 -819 529 336 1016 238 99 80 chr4_random 10939893 10940540 -7911273 + L1MC5 LINE L1 6852 7510 -451 262 248 60 77 chr4_random 10940595 10940894 -7910919 + L1MC5 LINE L1 7611 7904 -57 185 154 26 0 chr4_random 10941689 10941728 -7910085 + GA-rich Low_complexity Low_complexity 2 41 0 1970 102 3 62 chr4_random 10942066 10942370 -7909443 - AluY SINE Alu -25 286 1 39179 81 6 5 chr4_random 10943562 10949735 -7902078 + L1PA5 LINE L1 1 6173 0 591 280 37 74 chr4_random 10949882 10950261 -7901552 - MLT1A1 LTR MaLR 0 365 1 321 167 0 56 chr4_random 10950913 10950985 -7900828 + L1MC4 LINE L1 6636 6703 -1339 183 222 0 0 chr4_random 10950989 10951034 -7900779 + (TA)n Simple_repeat Simple_repeat 1 45 0 245 264 22 44 chr4_random 10951037 10951128 -7900685 + L1MC4 LINE L1 6614 6702 -1340 527 217 0 14 chr4_random 10951132 10951270 -7900543 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 250 287 23 0 chr4_random 10951285 10951372 -7900441 - L1MC4 LINE L1 -1339 6703 6615 2215 104 0 10 chr4_random 11151765 11152064 -7699749 - AluSx SINE Alu -16 296 1 1173 219 76 60 chr4_random 11152455 11152885 -7698928 + MER39 LTR ERV1 67 707 0 322 291 26 8 chr4_random 11155526 11155643 -7696170 + L2 LINE L2 3195 3313 0 268 252 143 17 chr4_random 11157325 11157444 -7694369 + L1ME4a LINE L1 5972 6105 -16 2099 86 17 14 chr4_random 11157473 11157765 -7694048 + AluY SINE Alu 5 297 -14 244 229 24 60 chr4_random 11157767 11157850 -7693963 - HAL1b LINE L1 -62 1286 1207 587 141 11 0 chr4_random 11159197 11159289 -7692524 - MER74A LTR ERVL 0 558 466 2372 105 0 6 chr4_random 11160344 11160657 -7691156 - AluSq SINE Alu -2 311 1 253 257 92 18 chr4_random 11163009 11163118 -7688695 + MIR SINE MIR 36 152 -110 483 209 7 20 chr4_random 11163423 11163571 -7688242 + CT-rich Low_complexity Low_complexity 3 148 0 1290 268 52 15 chr4_random 11163798 11164279 -7687534 - HAL1 LINE L1 -339 2168 1670 1577 247 50 102 chr4_random 11164507 11165281 -7686532 - HAL1 LINE L1 -1244 1263 530 338 293 66 42 chr4_random 11165406 11165573 -7686240 - HAL1 LINE L1 -2180 327 157 547 238 38 27 chr4_random 11165843 11166028 -7685785 - MER53 DNA DNA -2 187 1 227 147 45 58 chr4_random 11166677 11166833 -7684980 + (TGG)n Simple_repeat Simple_repeat 2 155 0 265 105 53 70 chr4_random 11166847 11167018 -7684795 + (TGG)n Simple_repeat Simple_repeat 3 170 0 244 180 49 0 chr4_random 11167034 11167095 -7684718 + (TGG)n Simple_repeat Simple_repeat 2 65 0 272 208 42 0 chr4_random 11168393 11168465 -7683348 + MIR SINE MIR 70 144 -118 9726 29 5 0 chr4_random 11171010 11172157 -7679656 - L1P2 LINE L1 -1144 5002 3850 4704 16 0 0 chr4_random 11172155 11172930 -7678883 + L1P2 LINE L1 5008 5782 -373 * 402 228 120 133 chr4_random 11173077 11173617 -7678196 - L1MC4 LINE L1 -1 8041 7509 557 267 297 15 chr4_random 11173745 11174210 -7677603 - L1MC4 LINE L1 -522 7520 6925 520 269 21 52 chr4_random 11177481 11177674 -7674139 + MLT1J2 LTR MaLR 20 206 -244 22 80 0 0 chr4_random 11177960 11178010 -7673803 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr4_random 11178563 11178589 -7673224 + AT_rich Low_complexity Low_complexity 1 26 0 457 223 191 21 chr4_random 11179378 11179566 -7672247 + MIR SINE MIR 2 221 -41 599 310 112 36 chr4_random 11182916 11183355 -7668458 + MLT1G1 LTR MaLR 1 472 -123 224 238 0 48 chr4_random 11184079 11184142 -7667671 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 919 206 75 23 chr4_random 11184249 11184584 -7667229 + MLT1C LTR MaLR 9 467 0 1432 275 105 32 chr4_random 11184605 11185140 -7666673 - MLT1G LTR MaLR 0 590 17 2323 60 17 3 chr4_random 11186313 11186612 -7665201 - AluY SINE Alu -8 303 1 262 321 72 21 chr4_random 11186612 11186945 -7664868 - L1MEc LINE L1 -4677 1633 1284 844 151 0 27 chr4_random 11186985 11187131 -7664682 - FLAM_C SINE Alu -1 142 1 696 289 82 86 chr4_random 11187132 11188151 -7663662 - L1MEc LINE L1 -4970 1149 135 38 15 5 0 chr4_random 11188166 11188248 -7663565 + AT_rich Low_complexity Low_complexity 1 45 0 782 104 0 9 chr4_random 11188388 11188503 -7663310 - MER51C LTR ERV1 0 640 527 2104 112 7 0 chr4_random 11190254 11190540 -7661273 + AluSx SINE Alu 1 288 -24 211 244 47 23 chr4_random 11190561 11190647 -7661166 + MIR SINE MIR 4 91 -171 206 247 62 25 chr4_random 11193380 11193461 -7658352 + MIR SINE MIR 76 159 -103 195 297 161 32 chr4_random 11193656 11193966 -7657847 + L2 LINE L2 2324 2673 -641 241 233 14 41 chr4_random 11194235 11194308 -7657505 + CT-rich Low_complexity Low_complexity 2 72 0 1326 179 14 107 chr4_random 11194388 11194997 -7656816 + MER4C LTR ERV1 1 455 -10 216 0 0 0 chr4_random 11194997 11195021 -7656792 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 503 220 6 0 chr4_random 11195642 11195815 -7655998 + (TG)n Simple_repeat Simple_repeat 1 174 0 1873 217 93 0 chr4_random 11195925 11196344 -7655469 - MER74A LTR ERVL -98 460 3 1025 245 62 88 chr4_random 11197438 11198018 -7653795 + L1MCc LINE L1 820 1384 -5039 1740 107 0 9 chr4_random 11198021 11198254 -7653559 + AluSx SINE Alu 1 231 -81 1586 139 295 150 chr4_random 11198254 11198986 -7652827 - pTR5 LTR ERV1 -3 2435 1352 382 208 9 87 chr4_random 11199083 11199314 -7652499 - pTR5 LTR ERV1 -1410 1028 816 381 179 29 37 chr4_random 11199315 11199439 -7652374 + Alu SINE Alu 236 296 -4 873 309 51 23 chr4_random 11199448 11199962 -7651851 + L1MCc LINE L1 1389 1916 -5025 680 134 8 0 chr4_random 11199962 11200096 -7651717 + (CA)n Simple_repeat Simple_repeat 1 135 0 239 279 0 15 chr4_random 11200196 11200264 -7651549 + LTR40b LTR ERVL 1 67 -395 509 206 0 0 chr4_random 11200283 11200375 -7651438 + LTR40b LTR ERVL 367 458 -4 597 253 71 0 chr4_random 11200402 11200584 -7651229 + L1MCc LINE L1 2188 2382 -4559 1651 242 33 20 chr4_random 11200715 11201173 -7650640 + MLT1C LTR MaLR 1 464 -3 366 299 171 37 chr4_random 11201383 11201764 -7650049 + L2 LINE L2 2881 3312 -1 2649 234 34 43 chr4_random 11202768 11203473 -7648340 + L1M3b LINE L1 1 699 -5582 1865 172 0 0 chr4_random 11203495 11203780 -7648033 - AluJo SINE Alu -27 285 1 3611 248 40 58 chr4_random 11203813 11206055 -7645758 + L1M3b LINE L1 603 2448 -3902 483 119 0 0 chr4_random 11206055 11206122 -7645691 + L1PA5 LINE L1 6077 6143 -11 3611 248 40 58 chr4_random 11206122 11206181 -7645632 + L1M3b LINE L1 2448 2507 -3843 515 141 0 22 chr4_random 11206155 11206247 -7645566 + L1 LINE L1 4702 4791 -1559 * 244 265 15 0 chr4_random 11207725 11207793 -7644020 + (TA)n Simple_repeat Simple_repeat 2 70 0 1207 151 0 10 chr4_random 11207838 11208037 -7643776 - L1MA4A LINE L1 -5 6298 6102 23 0 0 0 chr4_random 11210139 11210162 -7641651 + AT_rich Low_complexity Low_complexity 1 23 0 1920 127 4 0 chr4_random 11211136 11211403 -7640410 + AluJb SINE Alu 13 280 -32 225 0 0 0 chr4_random 11211403 11211428 -7640385 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 55 40 0 0 chr4_random 11211446 11211522 -7640291 + AT_rich Low_complexity Low_complexity 1 76 0 940 248 57 55 chr4_random 11211702 11211844 -7639969 - L1ME4a LINE L1 -3 6118 5978 384 59 0 0 chr4_random 11211844 11211895 -7639918 + (TG)n Simple_repeat Simple_repeat 2 52 0 940 248 57 55 chr4_random 11211895 11212135 -7639678 - L1ME4a LINE L1 -143 5978 5732 2246 109 0 20 chr4_random 11212135 11212438 -7639375 + AluSq SINE Alu 1 297 -16 940 248 57 55 chr4_random 11212438 11212578 -7639235 - L1ME4a LINE L1 -389 5732 5594 246 350 86 0 chr4_random 11212855 11212972 -7638841 - L3 LINE CR1 -4 1573 1447 186 43 0 0 chr4_random 11213910 11213933 -7637880 + (A)n Simple_repeat Simple_repeat 1 23 0 193 171 0 0 chr4_random 11214807 11214842 -7636971 - L2 LINE L2 -10 3303 3269 244 247 14 0 chr4_random 11215737 11215810 -7636003 - HsTC2 DNA Tc2 -1819 79 6 1069 217 46 170 chr4_random 11216458 11216704 -7635109 - L1MC4 LINE L1 -144 7898 7623 365 130 130 29 chr4_random 11216704 11216773 -7635040 + THE1C LTR MaLR 1 76 -299 1069 217 46 170 chr4_random 11216773 11217104 -7634709 - L1MC4 LINE L1 -419 7623 7333 338 207 35 11 chr4_random 11217210 11217297 -7634516 - L1MC4 LINE L1 -712 7330 7242 311 234 65 26 chr4_random 11217300 11217454 -7634359 - L1MC4 LINE L1 -953 7089 6930 1341 183 0 9 chr4_random 11218002 11218232 -7633581 - MER30 DNA MER1_type 0 230 3 705 210 4 84 chr4_random 11218831 11219069 -7632744 + L1MA7 LINE L1 4644 4862 -1284 305 275 92 9 chr4_random 11219070 11219179 -7632634 - MER58A DNA MER1_type 0 118 1 337 281 140 54 chr4_random 11219179 11219400 -7632413 + L1MC5 LINE L1 7199 7438 -523 3028 184 29 20 chr4_random 11219447 11220421 -7631392 + L1MA7 LINE L1 4868 5855 -436 290 347 66 30 chr4_random 11220553 11220720 -7631093 - MIR3 SINE MIR -5 203 31 1007 190 66 88 chr4_random 11221529 11221834 -7629979 - L1ME2 LINE L1 0 6164 5867 200 268 0 60 chr4_random 11224837 11225020 -7626793 + GA-rich Low_complexity Low_complexity 1 172 0 268 275 0 50 chr4_random 11225060 11225242 -7626571 + GA-rich Low_complexity Low_complexity 6 178 0 293 269 0 48 chr4_random 11225443 11225629 -7626184 + GA-rich Low_complexity Low_complexity 1 177 0 273 256 0 56 chr4_random 11225704 11225884 -7625929 + GA-rich Low_complexity Low_complexity 2 171 0 263 264 0 52 chr4_random 11225990 11226164 -7625649 + GA-rich Low_complexity Low_complexity 2 166 0 251 268 0 54 chr4_random 11226237 11226615 -7625198 + GA-rich Low_complexity Low_complexity 1 357 0 230 294 0 43 chr4_random 11226700 11226884 -7624929 + GA-rich Low_complexity Low_complexity 5 180 0 2304 88 0 0 chr4_random 11228178 11228472 -7623341 - AluSx SINE Alu -18 294 1 677 286 11 0 chr4_random 11228637 11228812 -7623001 + MER45A DNA AcHobo 1 177 -1 566 282 132 0 chr4_random 11228824 11229044 -7622769 - MIR SINE MIR -1 261 13 247 150 0 0 chr4_random 11229304 11229344 -7622469 + Alu SINE Alu 252 291 -11 1940 128 43 0 chr4_random 11229922 11230203 -7621610 + AluSq SINE Alu 1 293 -20 314 209 15 15 chr4_random 11230675 11230742 -7621071 + MER21B LTR ERV1 126 192 -671 2965 195 11 56 chr4_random 11231940 11232606 -7619207 - LTR8 LTR ERV1 0 691 56 488 235 7 98 chr4_random 11232608 11232761 -7619052 - LTR8A LTR ERV1 -588 139 1 468 305 39 7 chr4_random 11234346 11234500 -7617313 - MIR SINE MIR -90 172 14 580 141 61 0 chr4_random 11234992 11235091 -7616722 - FLAM_A SINE Alu -16 126 22 2207 116 0 0 chr4_random 11235321 11235614 -7616199 + AluSg SINE Alu 1 293 -17 890 147 0 35 chr4_random 11236507 11236650 -7615163 + AluJb SINE Alu 158 295 -17 297 260 24 32 chr4_random 11237379 11237502 -7614311 - MIR SINE MIR -71 191 70 24 0 0 0 chr4_random 11237616 11237640 -7614173 + AT_rich Low_complexity Low_complexity 1 24 0 335 191 16 0 chr4_random 11238112 11238175 -7613638 - LTR67 LTR ERVL 0 557 494 1284 166 119 32 chr4_random 11238847 11239124 -7612689 + AluJo SINE Alu 1 301 -1 330 182 159 0 chr4_random 11240825 11240913 -7610900 - L1ME4a LINE L1 -34 6087 5986 468 320 39 12 chr4_random 11240943 11241199 -7610614 - L1ME4a LINE L1 -210 5911 5649 197 345 159 28 chr4_random 11241316 11241461 -7610352 - L2 LINE L2 -27 3286 3123 330 283 108 33 chr4_random 11241505 11241745 -7610068 - L1P5 LINE L1 -572 5584 5327 319 362 41 14 chr4_random 11241908 11242129 -7609684 + L2 LINE L2 2595 2821 -493 1213 193 33 16 chr4_random 11242301 11242607 -7609206 - Charlie1 DNA MER1_type 0 2761 2451 245 187 96 153 chr4_random 11242620 11242829 -7608984 + MLT1H LTR MaLR 321 517 -32 * 1753 196 28 18 chr4_random 11242821 11243213 -7608600 - MLT2D LTR ERVL -7 407 12 331 287 108 45 chr4_random 11244268 11244491 -7607322 - MIR SINE MIR -20 242 6 465 306 122 4 chr4_random 11244535 11244764 -7607049 + MIR SINE MIR 7 262 0 24 0 0 0 chr4_random 11245839 11245863 -7605950 + AT_rich Low_complexity Low_complexity 1 24 0 2152 102 33 26 chr4_random 11247441 11247746 -7604067 + AluSc SINE Alu 1 307 -2 25 65 0 0 chr4_random 11452320 11452366 -7399447 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr4_random 11452479 11452501 -7399312 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr4_random 11453953 11453986 -7397827 + (CA)n Simple_repeat Simple_repeat 2 34 0 30 45 0 0 chr4_random 11455633 11455677 -7396136 + AT_rich Low_complexity Low_complexity 1 44 0 1503 212 34 0 chr4_random 11455748 11456041 -7395772 + AluJb SINE Alu 1 303 -9 324 0 0 0 chr4_random 11456111 11456147 -7395666 + (A)n Simple_repeat Simple_repeat 1 36 0 321 294 137 35 chr4_random 11456741 11456999 -7394814 - L1ME3A LINE L1 -9 6155 5875 859 126 8 0 chr4_random 11457097 11457224 -7394589 + AluYb8 SINE Alu 12 139 -179 342 197 15 0 chr4_random 11459281 11459347 -7392466 - MIR3 SINE MIR -47 161 95 1190 181 128 19 chr4_random 11459821 11460086 -7391727 + AluJb SINE Alu 1 294 -8 1254 120 0 10 chr4_random 11460207 11460399 -7391414 + MER30B DNA MER1_type 1 190 0 725 165 0 0 chr4_random 11460763 11460878 -7390935 + FLAM_C SINE Alu 1 115 -18 26 0 0 0 chr4_random 11460880 11460906 -7390907 + AT_rich Low_complexity Low_complexity 1 26 0 741 36 111 32 chr4_random 11461783 11462331 -7389482 + (AAATG)n Simple_repeat Simple_repeat 1 591 0 39752 64 3 0 chr4_random 11462331 11468484 -7383329 + L1PA4 LINE L1 2 6155 0 516 348 119 23 chr4_random 11468512 11469026 -7382787 + L1MDa LINE L1 1466 2028 -4512 21 0 0 0 chr4_random 11469186 11469207 -7382606 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr4_random 11469214 11469239 -7382574 + (T)n Simple_repeat Simple_repeat 1 25 0 316 240 39 23 chr4_random 11469627 11469756 -7382057 + L1MEc LINE L1 55 185 -6211 844 334 88 48 chr4_random 11469853 11470806 -7381007 + L1MEc LINE L1 305 1295 -5101 695 159 30 0 chr4_random 11470852 11470984 -7380829 - MSTB1 LTR MaLR -296 136 1 21 82 0 0 chr4_random 11472221 11472270 -7379543 + AT_rich Low_complexity Low_complexity 1 49 0 256 141 14 14 chr4_random 11472485 11472556 -7379257 + (TA)n Simple_repeat Simple_repeat 2 72 0 1009 187 87 69 chr4_random 11472590 11472932 -7378881 - LTR49 LTR ERV1 -168 557 156 1925 135 7 7 chr4_random 11472932 11473206 -7378607 + AluSp SINE Alu 19 292 -21 1009 187 87 69 chr4_random 11473206 11473238 -7378575 - LTR49 LTR ERV1 -569 156 126 25 31 0 0 chr4_random 11473937 11473969 -7377844 + AT_rich Low_complexity Low_complexity 1 32 0 487 229 142 11 chr4_random 11474227 11474410 -7377403 + MER20 DNA MER1_type 10 216 -3 1694 169 51 29 chr4_random 11474528 11474980 -7376833 - LTR56 LTR ERV1 0 437 2 2174 182 98 11 chr4_random 11475169 11475712 -7376101 - LTR49 LTR ERV1 -5 590 1 25 31 0 0 chr4_random 11476302 11476334 -7375479 + AT_rich Low_complexity Low_complexity 1 32 0 333 260 27 20 chr4_random 11476485 11476635 -7375178 + (TA)n Simple_repeat Simple_repeat 1 151 0 26 0 0 0 chr4_random 11476750 11476776 -7375037 + AT_rich Low_complexity Low_complexity 1 26 0 1192 246 48 10 chr4_random 11477580 11477994 -7373819 - MER54A LTR ERVL 0 901 472 2042 121 74 15 chr4_random 11478032 11478370 -7373443 - THE1B LTR MaLR 0 364 7 1314 242 51 2 chr4_random 11478379 11478772 -7373041 - MER54A LTR ERVL -489 412 1 1495 230 0 3 chr4_random 11479967 11480267 -7371546 - AluJb SINE Alu -5 307 9 1103 264 43 72 chr4_random 11481258 11481501 -7370312 - MLT1D LTR MaLR -1 504 255 2218 124 7 0 chr4_random 11481501 11481808 -7370005 - AluY SINE Alu -2 309 1 1103 264 43 72 chr4_random 11481808 11482079 -7369734 - MLT1D LTR MaLR -250 255 5 651 217 18 10 chr4_random 11482170 11482670 -7369143 + GA-rich Low_complexity Low_complexity 1 504 0 227 186 58 0 chr4_random 11482697 11482783 -7369030 + GA-rich Low_complexity Low_complexity 3 93 0 713 249 52 29 chr4_random 11482879 11483260 -7368553 - L1MCa LINE L1 -3509 2917 2528 408 295 81 33 chr4_random 11483296 11483489 -7368324 - L1MCa LINE L1 -4983 1624 1253 1220 237 7 4 chr4_random 11483705 11483984 -7367829 - MLT1A1 LTR MaLR 0 365 86 1068 247 155 25 chr4_random 11484829 11485275 -7366538 - L1MB5 LINE L1 -9 6165 5662 437 289 26 44 chr4_random 11485276 11485549 -7366264 + L1M4c LINE L1 1518 1785 -4599 2191 102 0 0 chr4_random 11485653 11485936 -7365877 + AluY SINE Alu 1 283 -28 22 0 0 0 chr4_random 11486299 11486321 -7365492 + AT_rich Low_complexity Low_complexity 1 22 0 447 278 98 17 chr4_random 11486368 11486741 -7365072 + L1M4c LINE L1 2325 2694 -3688 1738 205 106 12 chr4_random 11486744 11487168 -7364645 + MLT1C LTR MaLR 4 467 0 423 316 92 15 chr4_random 11487222 11487418 -7364395 + L1M4 LINE L1 8 218 -6324 258 315 11 0 chr4_random 11487768 11487857 -7363956 + L1M4 LINE L1 611 700 -5842 262 250 12 24 chr4_random 11488042 11488126 -7363687 + L1M4 LINE L1 820 902 -5640 1354 235 62 18 chr4_random 11488276 11488773 -7363040 + L1M4 LINE L1 1012 1530 -5116 435 329 7 0 chr4_random 11488800 11488940 -7362873 + CT-rich Low_complexity Low_complexity 1 141 0 505 314 114 50 chr4_random 11489647 11490128 -7361685 - L2 LINE L2 -448 2866 2355 3489 181 86 21 chr4_random 11495139 11495988 -7355825 + MER4D LTR ERV1 1 465 0 378 0 0 0 chr4_random 11496066 11496108 -7355705 + (GA)n Simple_repeat Simple_repeat 1 42 0 783 287 127 37 chr4_random 11496155 11496618 -7355195 + MLT1D LTR MaLR 1 505 0 255 353 29 36 chr4_random 11496978 11497117 -7354696 - MIR3 SINE MIR -62 146 9 2929 37 0 6 chr4_random 11497408 11497760 -7354053 + L1PA5 LINE L1 5805 6154 0 1476 244 102 13 chr4_random 11498061 11498521 -7353292 - MLT1D LTR MaLR 0 505 5 616 312 116 10 chr4_random 11498925 11499236 -7352577 - LTR16C LTR ERVL -38 453 110 2191 96 14 0 chr4_random 11502177 11502468 -7349345 + AluSx SINE Alu 2 296 -16 21 36 0 0 chr4_random 11503651 11503679 -7348134 + AT_rich Low_complexity Low_complexity 1 28 0 1841 167 0 3 chr4_random 11503885 11504191 -7347622 + AluJo SINE Alu 1 305 -7 655 186 29 21 chr4_random 11504226 11504366 -7347447 + FLAM_C SINE Alu 2 142 -1 345 312 153 10 chr4_random 11504367 11504668 -7347145 + L1MC/D LINE L1 5430 5773 -2035 1844 133 45 0 chr4_random 11505048 11505334 -7346479 + AluSx SINE Alu 1 299 -13 2256 80 0 13 chr4_random 11505334 11505634 -7346179 + AluSg1 SINE Alu 1 296 -13 31 0 0 43 chr4_random 11505901 11505922 -7345891 + AT_rich Low_complexity Low_complexity 1 21 -23 2156 91 40 0 chr4_random 11505922 11506219 -7345594 - AluY SINE Alu -2 309 1 31 0 0 43 chr4_random 11506219 11506243 -7345570 + AT_rich Low_complexity Low_complexity 21 44 0 22 35 0 0 chr4_random 11506329 11506358 -7345455 + AT_rich Low_complexity Low_complexity 1 29 0 715 280 21 25 chr4_random 11506394 11506633 -7345180 - AluSg1 SINE Alu -14 295 58 2031 119 3 3 chr4_random 11506934 11507229 -7344584 - AluSg SINE Alu -15 295 1 2148 125 0 0 chr4_random 11507697 11507993 -7343820 + AluSx SINE Alu 1 296 -16 960 163 47 0 chr4_random 11508015 11508187 -7343626 - MER5A DNA MER1_type -9 180 1 264 59 0 0 chr4_random 11508227 11508261 -7343552 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1961 136 13 10 chr4_random 11508307 11508617 -7343196 + AluSx SINE Alu 1 311 -1 313 139 0 0 chr4_random 11508644 11508687 -7343126 - Alu SINE Alu -259 43 1 338 259 155 0 chr4_random 11509067 11509183 -7342630 - L2 LINE L2 0 3313 3180 923 154 71 0 chr4_random 11509366 11509535 -7342278 - AluJo SINE Alu -11 301 121 405 273 7 49 chr4_random 11509730 11509873 -7341940 - L1MA9 LINE L1 -181 6131 5995 2168 76 3 26 chr4_random 11509913 11510217 -7341596 + AluY SINE Alu 1 297 -14 451 277 20 14 chr4_random 11510571 11510584 -7341229 + L1MA6 LINE L1 6134 6145 -155 2200 98 3 0 chr4_random 11510584 11510881 -7340932 + AluSq SINE Alu 1 298 -15 451 277 20 14 chr4_random 11510881 11511015 -7340798 + L1MA6 LINE L1 6145 6282 -18 1627 178 7 17 chr4_random 11511018 11511310 -7340503 - AluJo SINE Alu -20 292 4 408 97 0 0 chr4_random 11511503 11511565 -7340248 + (TG)n Simple_repeat Simple_repeat 2 63 0 194 0 0 37 chr4_random 11512547 11512574 -7339239 + (TG)n Simple_repeat Simple_repeat 1 26 0 328 336 173 18 chr4_random 11512656 11512939 -7338874 - HAL1 LINE L1 -1301 1206 880 180 125 0 0 chr4_random 11512939 11512971 -7338842 + (TC)n Simple_repeat Simple_repeat 1 32 0 383 38 19 0 chr4_random 11512972 11513025 -7338788 + (TTCC)n Simple_repeat Simple_repeat 1 54 0 1107 60 0 62 chr4_random 11513047 11514084 -7337729 + (GCTG)n Simple_repeat Simple_repeat 1 1145 0 1107 43 0 32 chr4_random 11514084 11514269 -7337544 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 780 93 0 64 chr4_random 11514415 11515039 -7336774 + (GCTG)n Simple_repeat Simple_repeat 1 583 0 442 65 0 80 chr4_random 11515059 11515197 -7336616 + (GCTG)n Simple_repeat Simple_repeat 2 128 0 765 63 0 63 chr4_random 11515266 11515455 -7336358 + (GCTG)n Simple_repeat Simple_repeat 2 178 0 816 84 0 71 chr4_random 11515500 11516252 -7335561 + (GCTG)n Simple_repeat Simple_repeat 1 698 0 836 67 0 61 chr4_random 11516278 11516644 -7335169 + (GCTG)n Simple_repeat Simple_repeat 2 520 0 744 89 0 70 chr4_random 11516662 11517133 -7334680 + (GCTG)n Simple_repeat Simple_repeat 1 438 0 667 67 0 72 chr4_random 11517181 11517375 -7334438 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 802 74 0 69 chr4_random 11517410 11517866 -7333947 + (GCTG)n Simple_repeat Simple_repeat 1 424 0 562 67 0 59 chr4_random 11517918 11518053 -7333760 + (GCTG)n Simple_repeat Simple_repeat 4 130 0 810 59 0 68 chr4_random 11518070 11518452 -7333361 + (GCTG)n Simple_repeat Simple_repeat 2 532 0 478 94 0 77 chr4_random 11518472 11518653 -7333160 + (GCTG)n Simple_repeat Simple_repeat 2 168 0 795 63 0 63 chr4_random 11518702 11518893 -7332920 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 486 85 0 73 chr4_random 11518919 11519083 -7332730 + (GCTG)n Simple_repeat Simple_repeat 3 154 0 733 76 0 72 chr4_random 11519096 11519597 -7332216 + (GCTG)n Simple_repeat Simple_repeat 1 464 0 813 79 0 66 chr4_random 11519632 11521022 -7330791 + (GCTG)n Simple_repeat Simple_repeat 1 1476 0 428 92 0 79 chr4_random 11521042 11521206 -7330607 + (GCTG)n Simple_repeat Simple_repeat 2 152 0 762 68 0 63 chr4_random 11521255 11521446 -7330367 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 692 81 0 69 chr4_random 11521472 11521792 -7330021 + (GCTG)n Simple_repeat Simple_repeat 1 298 0 795 78 0 70 chr4_random 11521835 11522207 -7329606 + (GCTG)n Simple_repeat Simple_repeat 1 345 0 700 62 0 72 chr4_random 11522226 11522420 -7329393 + (GCTG)n Simple_repeat Simple_repeat 1 180 0 835 72 0 67 chr4_random 11522455 11522902 -7328911 + (GCTG)n Simple_repeat Simple_repeat 1 416 0 755 84 0 71 chr4_random 11522977 11523359 -7328454 + (GCTG)n Simple_repeat Simple_repeat 1 355 0 723 82 0 69 chr4_random 11523404 11523945 -7327868 + (GCTG)n Simple_repeat Simple_repeat 1 503 0 802 82 0 68 chr4_random 11523980 11524479 -7327334 + (GCTG)n Simple_repeat Simple_repeat 1 465 0 781 79 0 65 chr4_random 11524507 11524945 -7326868 + (GCTG)n Simple_repeat Simple_repeat 1 409 0 759 76 3 66 chr4_random 11524965 11525345 -7326468 + (GCTG)n Simple_repeat Simple_repeat 1 356 0 837 76 1 68 chr4_random 11525373 11526517 -7325296 + (GCTG)n Simple_repeat Simple_repeat 1 1067 0 762 80 0 77 chr4_random 11526571 11526966 -7324847 + (GCTG)n Simple_repeat Simple_repeat 1 364 0 740 74 0 63 chr4_random 11527021 11527487 -7324326 + (GCTG)n Simple_repeat Simple_repeat 1 436 0 759 77 0 70 chr4_random 11527507 11528400 -7323413 + (GCTG)n Simple_repeat Simple_repeat 1 830 0 534 78 0 78 chr4_random 11528426 11528618 -7323195 + (GCTG)n Simple_repeat Simple_repeat 2 178 0 726 75 0 66 chr4_random 11528638 11528985 -7322828 + (GCTG)n Simple_repeat Simple_repeat 1 324 0 853 77 0 72 chr4_random 11529013 11530047 -7321766 + (GCTG)n Simple_repeat Simple_repeat 1 959 0 21 0 0 0 chr4_random 11530052 11530073 -7321740 + AT_rich Low_complexity Low_complexity 1 21 0 368 217 51 19 chr4_random 11530286 11530609 -7321204 + (TA)n Simple_repeat Simple_repeat 1 333 0 24 0 0 0 chr4_random 11530705 11530729 -7321084 + AT_rich Low_complexity Low_complexity 1 24 0 1836 133 3 3 chr4_random 11531153 11531438 -7320375 + AluSq SINE Alu 24 308 -5 277 227 39 19 chr4_random 11531925 11532079 -7319734 + (TA)n Simple_repeat Simple_repeat 2 158 0 321 260 55 48 chr4_random 11532203 11532349 -7319464 + L1MCa LINE L1 1918 2064 -4362 * 323 261 98 61 chr4_random 11532277 11532541 -7319272 - L1MCa LINE L1 -4334 2092 1819 315 326 101 23 chr4_random 11532600 11532729 -7319084 - L1MC4 LINE L1 -1341 6701 6563 225 0 0 0 chr4_random 11532878 11532903 -7318910 + (TA)n Simple_repeat Simple_repeat 1 25 0 247 252 24 16 chr4_random 11532927 11533050 -7318763 + (TA)n Simple_repeat Simple_repeat 2 125 0 26 0 0 0 chr4_random 11533124 11533150 -7318663 + AT_rich Low_complexity Low_complexity 1 26 0 2133 102 0 0 chr4_random 11533166 11533449 -7318364 + AluSx SINE Alu 12 294 -18 345 305 73 87 chr4_random 11533487 11534039 -7317774 - L1MCa LINE L1 -119 6282 1896 330 316 119 76 chr4_random 11533719 11534284 -7317529 + L1M4c LINE L1 1807 2281 -4103 * 22 56 0 0 chr4_random 11535115 11535151 -7316662 + AT_rich Low_complexity Low_complexity 1 36 0 189 154 0 0 chr4_random 11535254 11535293 -7316520 + (CA)n Simple_repeat Simple_repeat 2 40 0 283 275 31 6 chr4_random 11535334 11535494 -7316319 + (TA)n Simple_repeat Simple_repeat 2 165 0 317 267 106 39 chr4_random 11535539 11535719 -7316094 - L1MC5 LINE L1 -209 7752 7561 388 275 7 0 chr4_random 11536044 11536182 -7315631 + (CA)n Simple_repeat Simple_repeat 2 140 0 416 288 0 6 chr4_random 11536323 11536486 -7315327 + (CA)n Simple_repeat Simple_repeat 2 163 0 2195 92 0 3 chr4_random 11536489 11536784 -7315029 + AluSx SINE Alu 1 294 -18 1127 133 0 0 chr4_random 11536784 11536949 -7314864 + AluSg/x SINE Alu 134 298 -14 293 326 6 6 chr4_random 11536961 11537133 -7314680 + (CA)n Simple_repeat Simple_repeat 1 172 0 260 188 0 12 chr4_random 11537149 11537234 -7314579 + (CA)n Simple_repeat Simple_repeat 1 84 0 597 193 18 0 chr4_random 11538282 11538430 -7313383 - L1PA16 LINE L1 0 6166 6040 2308 109 0 0 chr4_random 11538564 11538875 -7312938 + AluSx SINE Alu 1 311 -1 1332 188 16 12 chr4_random 11538976 11539413 -7312400 - L1PA16 LINE L1 -133 6033 5718 844 150 12 12 chr4_random 11539407 11539567 -7312246 - L1PA16 LINE L1 -245 5921 5762 * 904 158 0 6 chr4_random 11539567 11539725 -7312088 - L1PA16 LINE L1 -247 5919 5763 1556 165 0 54 chr4_random 11539728 11539965 -7311848 - L1PA16 LINE L1 -249 5917 5702 2041 107 7 0 chr4_random 11539965 11540246 -7311567 + AluSx SINE Alu 23 305 -7 1556 165 0 54 chr4_random 11540246 11540341 -7311472 - L1PA16 LINE L1 -464 5702 5603 1495 189 10 91 chr4_random 11540338 11540610 -7311203 - L1PA16 LINE L1 -22 6144 5938 * 3234 107 2 2 chr4_random 11540610 11541057 -7310756 + L1PA7 LINE L1 5708 6154 0 1495 189 10 91 chr4_random 11541057 11541214 -7310599 - L1PA16 LINE L1 -228 5938 5770 310 188 0 0 chr4_random 11541215 11541255 -7310558 + L1PA12 LINE L1 5999 6041 -127 1925 167 0 0 chr4_random 11541255 11541567 -7310246 + AluSx SINE Alu 1 312 0 310 188 0 0 chr4_random 11541567 11541590 -7310223 + L1PA12 LINE L1 6040 6062 -106 183 42 0 0 chr4_random 11541604 11541628 -7310185 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1967 100 22 59 chr4_random 11542050 11542192 -7309621 + AluSg SINE Alu 1 147 -163 2220 93 0 22 chr4_random 11542192 11542504 -7309309 + AluY SINE Alu 1 305 -6 1967 100 22 59 chr4_random 11542504 11542681 -7309132 + AluSg SINE Alu 147 308 -2 652 192 0 0 chr4_random 11542765 11542869 -7308944 + FLAM_C SINE Alu 2 105 -38 3174 261 33 6 chr4_random 11542870 11543689 -7308124 - ERVL LTR ERVL -3750 2014 1174 358 148 20 0 chr4_random 11543692 11543793 -7308020 + (CCAA)n Simple_repeat Simple_repeat 1 103 0 871 238 0 0 chr4_random 11543795 11543982 -7307831 - ERVL LTR ERVL -4575 1189 1002 294 29 0 0 chr4_random 11543982 11544017 -7307796 + (TG)n Simple_repeat Simple_repeat 2 36 0 5039 175 22 29 chr4_random 11544029 11544957 -7306856 - MER49 LTR ERV1 -2 921 1 303 294 30 3 chr4_random 11544957 11545068 -7306745 - MLT2C1 LTR ERVL -50 364 237 351 274 29 0 chr4_random 11545102 11545204 -7306609 - MLT2C1 LTR ERVL -291 106 2 211 369 99 0 chr4_random 11545520 11545631 -7306182 - MIR SINE MIR -78 184 63 275 339 39 8 chr4_random 11546431 11546561 -7305252 + MIR SINE MIR 3 136 -126 1191 210 55 16 chr4_random 11546790 11547096 -7304717 + MLT1D LTR MaLR 206 505 0 21 0 0 0 chr4_random 11547335 11547356 -7304457 + AT_rich Low_complexity Low_complexity 1 21 0 183 303 101 0 chr4_random 11548166 11548255 -7303558 - L2 LINE L2 -215 3057 2960 355 250 75 44 chr4_random 11548796 11548956 -7302857 + MIR3 SINE MIR 3 167 -41 2211 113 0 3 chr4_random 11549732 11550043 -7301770 + AluSq SINE Alu 1 310 -3 811 278 12 16 chr4_random 11550952 11551278 -7300535 - MER34C LTR ERV1 -155 430 63 6333 43 0 4 chr4_random 11552021 11552771 -7299042 + L1PA5 LINE L1 5408 6154 0 258 295 21 0 chr4_random 11553530 11553625 -7298188 - L2 LINE L2 -1 3312 3216 743 76 0 66 chr4_random 11553874 11554410 -7297403 + (GCTG)n Simple_repeat Simple_repeat 1 500 0 1127 77 0 53 chr4_random 11554440 11555065 -7296748 + (GCTG)n Simple_repeat Simple_repeat 1 591 0 666 58 0 75 chr4_random 11555077 11555328 -7296485 + (GCTG)n Simple_repeat Simple_repeat 1 232 0 841 78 0 59 chr4_random 11555354 11555726 -7296087 + (GCTG)n Simple_repeat Simple_repeat 1 349 0 990 169 0 11 chr4_random 11555733 11555911 -7295902 - AluSg/x SINE Alu -53 257 82 1364 143 0 9 chr4_random 11555912 11556143 -7295670 - AluSg/x SINE Alu -2 308 80 287 154 0 0 chr4_random 11556143 11556195 -7295618 - Alu SINE Alu -2 299 248 1250 154 0 9 chr4_random 11556195 11556409 -7295404 - AluSg/x SINE Alu -16 296 85 1501 127 0 9 chr4_random 11556409 11556637 -7295176 - AluSg/x SINE Alu -5 307 82 418 78 0 0 chr4_random 11556637 11556701 -7295112 - Alu SINE Alu -3 307 244 1288 158 0 14 chr4_random 11556701 11556916 -7294897 - AluSg/x SINE Alu -19 291 80 407 62 0 0 chr4_random 11556916 11556981 -7294832 - Alu SINE Alu -2 309 245 1378 131 0 9 chr4_random 11556981 11557195 -7294618 - AluSg/x SINE Alu -19 293 82 1419 134 0 31 chr4_random 11557195 11557362 -7294451 - AluSg/x SINE Alu -12 300 140 2174 101 0 0 chr4_random 11557362 11557659 -7294154 - AluSc SINE Alu -12 297 1 1419 134 0 31 chr4_random 11557659 11557715 -7294098 - AluSg/x SINE Alu -172 140 84 400 82 0 0 chr4_random 11557716 11557777 -7294036 - Alu SINE Alu -6 304 244 1350 136 0 9 chr4_random 11557777 11557991 -7293822 - AluSg/x SINE Alu -19 291 80 1413 131 0 9 chr4_random 11557992 11558213 -7293600 - AluSg/x SINE Alu -12 300 82 1345 158 0 5 chr4_random 11558212 11558434 -7293379 - AluSg/x SINE Alu -5 307 87 * 747 69 0 64 chr4_random 11558466 11558654 -7293159 + (GCTG)n Simple_repeat Simple_repeat 4 179 0 678 90 0 59 chr4_random 11558681 11559006 -7292807 + (GCTG)n Simple_repeat Simple_repeat 1 305 0 770 68 0 68 chr4_random 11559017 11559209 -7292604 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 814 77 0 58 chr4_random 11559261 11559646 -7292167 + (GCTG)n Simple_repeat Simple_repeat 1 362 0 783 87 0 70 chr4_random 11559658 11560468 -7291345 + (GCTG)n Simple_repeat Simple_repeat 1 753 0 769 89 0 69 chr4_random 11560503 11561417 -7290396 + (GCTG)n Simple_repeat Simple_repeat 1 850 0 832 77 0 65 chr4_random 11561462 11562470 -7289343 + (GCTG)n Simple_repeat Simple_repeat 4 1116 0 795 85 0 69 chr4_random 11562488 11563115 -7288698 + (GCTG)n Simple_repeat Simple_repeat 1 583 0 682 86 0 69 chr4_random 11563169 11563730 -7288083 + (GCTG)n Simple_repeat Simple_repeat 1 522 0 840 58 0 63 chr4_random 11563743 11563934 -7287879 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 814 82 0 57 chr4_random 11563946 11564322 -7287491 + (GCTG)n Simple_repeat Simple_repeat 4 528 0 620 88 0 70 chr4_random 11564339 11564615 -7287198 + (GCTG)n Simple_repeat Simple_repeat 1 256 0 713 68 0 68 chr4_random 11564659 11564850 -7286963 + (GCTG)n Simple_repeat Simple_repeat 1 178 0 676 68 0 73 chr4_random 11564865 11565056 -7286757 + (GCTG)n Simple_repeat Simple_repeat 2 178 0 832 74 0 64 chr4_random 11565107 11565485 -7286328 + (GCTG)n Simple_repeat Simple_repeat 2 528 0 335 55 0 77 chr4_random 11565501 11565592 -7286221 + (GCTG)n Simple_repeat Simple_repeat 4 87 0 760 57 0 72 chr4_random 11565618 11565811 -7286002 + (GCTG)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr4_random 11565816 11565837 -7285976 + AT_rich Low_complexity Low_complexity 1 21 0 1998 102 11 3 chr4_random 11566319 11566604 -7285209 - AluSp SINE Alu -26 287 1 216 304 76 0 chr4_random 11566736 11566815 -7284998 - L2 LINE L2 -20 3252 3168 21 57 0 0 chr4_random 11566849 11566884 -7284929 + AT_rich Low_complexity Low_complexity 1 35 0 570 107 0 0 chr4_random 11566907 11566982 -7284831 - AluJ/FLAM SINE Alu -235 77 3 4255 162 37 43 chr4_random 11567006 11567893 -7283920 - L1MB3 LINE L1 -2 6181 5299 1806 141 18 0 chr4_random 11567893 11568177 -7283636 - AluSq SINE Alu -24 289 1 4255 162 37 43 chr4_random 11568177 11568214 -7283599 - L1MB3 LINE L1 -884 5299 5263 1298 171 16 4 chr4_random 11568215 11568467 -7283346 + L1MB3 LINE L1 5699 5953 -230 * 1698 234 28 5 chr4_random 11568461 11568896 -7282917 - L1MB3 LINE L1 -872 5274 4830 241 185 37 0 chr4_random 11569439 11569493 -7282320 - L1MB8 LINE L1 -5 6173 6118 24 77 0 0 chr4_random 11570778 11570830 -7280983 + AT_rich Low_complexity Low_complexity 1 52 0 1729 164 10 26 chr4_random 11571299 11571603 -7280210 - AluSp SINE Alu -14 299 1 1907 159 0 0 chr4_random 11571975 11572271 -7279542 + AluSx SINE Alu 1 296 -16 192 324 0 0 chr4_random 11572432 11572506 -7279307 - MIR SINE MIR -4 258 185 358 312 86 67 chr4_random 11572834 11573234 -7278579 - L1MEc LINE L1 -5003 1255 789 326 114 45 23 chr4_random 11573240 11573328 -7278485 + (CATCT)n Simple_repeat Simple_repeat 1 90 0 1369 209 50 17 chr4_random 11573418 11573774 -7278039 - AluJo SINE Alu 0 366 1 742 189 23 15 chr4_random 11573776 11573908 -7277905 - AluJo/FLAM SINE Alu -169 133 1 257 313 47 0 chr4_random 11574501 11574629 -7277184 + (CTAGGG)n Simple_repeat Simple_repeat 3 136 0 287 127 0 85 chr4_random 11574631 11574796 -7277017 + (CAGGG)n Simple_repeat Simple_repeat 5 155 0 285 136 0 85 chr4_random 11574926 11575102 -7276711 + (CAGGG)n Simple_repeat Simple_repeat 1 161 0 337 173 0 81 chr4_random 11575153 11575461 -7276352 + (CAGGG)n Simple_repeat Simple_repeat 1 283 0 288 127 0 75 chr4_random 11575594 11575728 -7276085 + (CAGGG)n Simple_repeat Simple_repeat 1 124 0 256 213 5 80 chr4_random 11575835 11576023 -7275790 + (CAGAG)n Simple_repeat Simple_repeat 5 178 0 * 376 174 0 87 chr4_random 11575923 11576119 -7275694 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 203 119 0 90 chr4_random 11576192 11576259 -7275554 + (CCCTG)n Simple_repeat Simple_repeat 1 61 0 786 134 0 17 chr4_random 11576313 11576432 -7275381 - AluSq/x SINE Alu -180 133 17 335 275 16 77 chr4_random 11576434 11576616 -7275197 + MIR SINE MIR 92 262 0 385 281 54 0 chr4_random 11576733 11576900 -7274913 + (CCCTAG)n Simple_repeat Simple_repeat 2 177 0 354 226 67 5 chr4_random 11577113 11577525 -7274288 + (CTAGGG)n Simple_repeat Simple_repeat 1 437 0 435 276 40 0 chr4_random 11577554 11577706 -7274107 + (CTAGGG)n Simple_repeat Simple_repeat 3 160 0 329 296 47 0 chr4_random 11577737 11577906 -7273907 + (CTAGGG)n Simple_repeat Simple_repeat 3 179 0 344 286 54 6 chr4_random 11577992 11578160 -7273653 + (CTAGGG)n Simple_repeat Simple_repeat 3 178 0 213 103 0 69 chr4_random 11578169 11578227 -7273586 + (CAGGG)n Simple_repeat Simple_repeat 1 54 0 295 309 29 29 chr4_random 11578339 11578514 -7273299 + (CTAGGG)n Simple_repeat Simple_repeat 4 178 0 450 209 51 40 chr4_random 11578557 11578734 -7273079 + (CTAGGG)n Simple_repeat Simple_repeat 1 179 0 334 254 48 24 chr4_random 11578794 11578959 -7272854 + (CTAGGG)n Simple_repeat Simple_repeat 1 169 0 * 382 152 0 123 chr4_random 11578906 11579110 -7272703 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 * 395 276 47 0 chr4_random 11578988 11579158 -7272655 + (CTAGGG)n Simple_repeat Simple_repeat 1 178 0 200 146 0 21 chr4_random 11579175 11579223 -7272590 + (CAGGG)n Simple_repeat Simple_repeat 1 47 0 388 178 0 72 chr4_random 11579306 11579458 -7272355 + (CAGGG)n Simple_repeat Simple_repeat 1 141 0 394 270 47 0 chr4_random 11579497 11579645 -7272168 + (CTAGGG)n Simple_repeat Simple_repeat 6 160 0 260 199 0 92 chr4_random 11579624 11579820 -7271993 + (CAGGG)n Simple_repeat Simple_repeat 2 179 0 * 190 143 41 0 chr4_random 11579881 11579930 -7271883 + (CTAGGG)n Simple_repeat Simple_repeat 2 52 0 350 191 6 65 chr4_random 11580026 11580440 -7271373 + (CAGGG)n Simple_repeat Simple_repeat 1 389 0 812 276 99 27 chr4_random 11581270 11581622 -7270191 - HSREP522 Satellite telomeric -171 377 1 4706 223 67 9 chr4_random 11581757 11583047 -7268766 + L1 LINE L1 2785 4148 -1998 2563 116 84 6 chr4_random 11583047 11583513 -7268300 - HSREP522 Satellite telomeric 0 504 3 1476 168 190 20 chr4_random 11583534 11584177 -7267636 - TAR1 Satellite telomeric -244 1867 1116 2250 102 0 41 chr4_random 11584531 11584845 -7266968 - AluSg SINE Alu -9 301 1 371 326 0 23 chr4_random 11585145 11585277 -7266536 + (CA)n Simple_repeat Simple_repeat 1 129 0 180 270 16 16 chr4_random 11585425 11585488 -7266325 - L2 LINE L2 -6 3266 3204 339 261 130 9 chr4_random 11586235 11586350 -7265463 - MIR SINE MIR -74 188 60 909 252 95 95 chr4_random 11588821 11589341 -7262472 - L1ME3A LINE L1 0 6170 5648 303 93 0 0 chr4_random 11589341 11589384 -7262429 + (TG)n Simple_repeat Simple_repeat 2 44 0 909 252 95 95 chr4_random 11589384 11589475 -7262338 - L1ME3A LINE L1 -521 5649 5559 409 287 81 5 chr4_random 11589479 11589688 -7262125 - L1MC4a LINE L1 -1910 5898 5674 317 269 64 6 chr4_random 11589712 11589868 -7261945 - L1ME4a LINE L1 -1 6120 5956 2074 139 3 13 chr4_random 11589876 11590185 -7261628 - AluJb SINE Alu -6 306 1 1306 166 0 24 chr4_random 11591280 11591491 -7260322 - AluJo SINE Alu -22 290 85 752 165 8 0 chr4_random 11592653 11592780 -7259033 - FLAM_A SINE Alu -5 128 1 23 0 0 0 chr4_random 11593358 11593381 -7258432 + AT_rich Low_complexity Low_complexity 1 23 0 182 239 43 0 chr4_random 11593638 11593684 -7258129 + MIR SINE MIR 45 92 -170 764 116 313 0 chr4_random 11593711 11593858 -7257955 + MER46A DNA MER2_type 44 236 0 305 271 115 33 chr4_random 11593863 11593985 -7257828 + MIR SINE MIR 124 255 -7 6773 114 63 14 chr4_random 11594498 11595647 -7256166 + HSMAR2 DNA Mariner 93 1297 -5 2468 141 19 61 chr4_random 11595652 11596047 -7255766 - L1MA8 LINE L1 -70 6221 5852 1874 169 3 16 chr4_random 11596047 11596218 -7255595 - AluJb SINE Alu -8 304 137 1934 102 109 4 chr4_random 11596218 11596484 -7255329 - AluSp SINE Alu -19 294 1 1874 169 3 16 chr4_random 11596484 11596620 -7255193 - AluJb SINE Alu -175 137 1 2468 141 19 61 chr4_random 11596620 11596749 -7255064 - L1MA8 LINE L1 -439 5852 5719 1823 221 27 27 chr4_random 11596757 11597200 -7254613 + MLT1C LTR MaLR 1 443 -24 2364 114 0 3 chr4_random 11597213 11597521 -7254292 + AluSg SINE Alu 1 307 -3 5130 62 10 0 chr4_random 11597708 11598389 -7253424 + L1PA5 LINE L1 5467 6154 0 2155 96 11 11 chr4_random 11598934 11599251 -7252562 + AluSg SINE Alu 1 317 0 504 246 154 0 chr4_random 11599330 11599505 -7252308 - MLT1J1 LTR MaLR -7 439 238 1883 155 0 34 chr4_random 11599640 11599962 -7251851 + AluJo SINE Alu 1 311 -1 293 264 83 76 chr4_random 11600157 11600301 -7251512 + L2 LINE L2 3169 3313 0 425 204 78 10 chr4_random 11600390 11600493 -7251320 - MER45A DNA AcHobo 0 178 69 226 211 0 63 chr4_random 11601352 11601447 -7250366 + G-rich Low_complexity Low_complexity 4 92 0 180 0 0 0 chr4_random 11602408 11602428 -7249385 + (TC)n Simple_repeat Simple_repeat 2 21 0 1743 188 13 3 chr4_random 11603140 11603449 -7248364 - AluJo SINE Alu 0 312 1 250 198 0 120 chr4_random 11603672 11603765 -7248048 + MIR SINE MIR 82 164 -44 267 242 16 24 chr4_random 11604290 11604371 -7247442 + CT-rich Low_complexity Low_complexity 1 81 -443 2379 105 0 0 chr4_random 11604371 11604676 -7247137 - AluSg SINE Alu -5 305 1 267 242 16 24 chr4_random 11604676 11604819 -7246994 + CT-rich Low_complexity Low_complexity 81 524 0 2090 129 0 10 chr4_random 11604825 11605127 -7246686 - AluSx SINE Alu -13 299 1 370 209 9 19 chr4_random 11605146 11605251 -7246562 + CT-rich Low_complexity Low_complexity 4 107 0 504 88 44 0 chr4_random 11605373 11605464 -7246349 + (TCCA)n Simple_repeat Simple_repeat 3 97 0 330 266 18 71 chr4_random 11605502 11605671 -7246142 - L2 LINE L2 -850 2464 2305 204 234 0 21 chr4_random 11605834 11605881 -7245932 + MIR SINE MIR 100 145 -63 200 308 62 0 chr4_random 11606282 11606347 -7245466 + L3 LINE CR1 927 995 -582 463 297 103 5 chr4_random 11606607 11606802 -7245011 + L2 LINE L2 3100 3313 0 195 162 0 0 chr4_random 11606813 11606850 -7244963 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 1228 68 20 0 chr4_random 11606946 11607093 -7244720 + AluSx SINE Alu 1 150 -163 285 277 119 20 chr4_random 11607110 11607211 -7244602 - L2 LINE L2 -34 3279 3169 1276 137 0 49 chr4_random 11607406 11607632 -7244181 - AluJo SINE Alu -1 311 97 1029 108 0 0 chr4_random 11607635 11607821 -7243992 + AluSx SINE Alu 154 339 0 353 360 47 0 chr4_random 11607834 11607984 -7243829 + L3 LINE CR1 1406 1562 -15 623 249 30 12 chr4_random 11608168 11608333 -7243480 - MIR SINE MIR 0 262 95 376 259 89 50 chr4_random 11608333 11608512 -7243301 - L1MC4 LINE L1 -1137 6648 6499 2524 76 0 0 chr4_random 11608526 11608829 -7242984 - AluY SINE Alu -3 308 6 706 314 38 46 chr4_random 11608898 11609271 -7242542 - L1MEc LINE L1 -3922 2474 2105 2188 108 3 3 chr4_random 11609317 11609612 -7242201 - AluSq SINE Alu -18 295 1 2041 144 0 7 chr4_random 11609852 11610187 -7241626 - AluSx SINE Alu 0 312 1 693 240 30 25 chr4_random 11610585 11610785 -7241028 + L2 LINE L2 3109 3309 -4 359 278 76 7 chr4_random 11610811 11610955 -7240858 - HAL1b LINE L1 -798 550 397 557 225 14 7 chr4_random 11611443 11611581 -7240232 - MLT1D LTR MaLR -1 504 366 686 78 0 72 chr4_random 11611590 11611899 -7239914 + (CAGC)n Simple_repeat Simple_repeat 1 286 0 756 91 0 73 chr4_random 11611911 11613115 -7238698 + (CAGC)n Simple_repeat Simple_repeat 1 1116 0 770 68 0 68 chr4_random 11613167 11613359 -7238454 + (CAGC)n Simple_repeat Simple_repeat 2 180 0 537 150 4 39 chr4_random 11613370 11613654 -7238159 + (CAGC)n Simple_repeat Simple_repeat 1 273 0 1028 183 16 0 chr4_random 11614155 11614341 -7237472 + MER5A DNA MER1_type 1 189 0 189 216 0 20 chr4_random 11614417 11614468 -7237345 - MIR3 SINE MIR -156 52 3 21 0 0 0 chr4_random 11615082 11615103 -7236710 + AT_rich Low_complexity Low_complexity 1 21 0 217 98 49 0 chr4_random 11616488 11616529 -7235284 + (CATTT)n Simple_repeat Simple_repeat 4 46 0 369 295 133 57 chr4_random 11616535 11617068 -7234745 - L1MEd LINE L1 -4903 1216 795 258 160 67 17 chr4_random 11617070 11617189 -7234624 + (CATTT)n Simple_repeat Simple_repeat 5 129 0 1651 157 0 16 chr4_random 11617880 11618135 -7233678 - AluSg SINE Alu -59 251 1 28 0 0 0 chr4_random 11618677 11618705 -7233108 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr4_random 11618835 11618858 -7232955 + GC_rich Low_complexity Low_complexity 1 23 0 379 111 0 16 chr4_random 11619089 11619152 -7232661 + Alu SINE Alu 240 301 0 1358 148 0 9 chr4_random 11619154 11619364 -7232449 + AluSg/x SINE Alu 84 291 -19 325 99 0 10 chr4_random 11619364 11619427 -7232386 + Alu SINE Alu 244 296 -4 989 173 0 17 chr4_random 11619430 11619609 -7232204 + AluSg/x SINE Alu 84 259 -53 185 169 8 57 chr4_random 11619615 11619739 -7232074 + (CAGC)n Simple_repeat Simple_repeat 2 119 0 28 29 0 0 chr4_random 11820790 11820825 -7030988 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr4_random 11820899 11820926 -7030887 + AT_rich Low_complexity Low_complexity 1 27 0 814 248 13 22 chr4_random 11822039 11822265 -7029548 - LTR52 LTR ERVL -197 224 1 394 250 32 32 chr4_random 11822423 11822547 -7029266 + LTR52 LTR ERVL 67 190 -231 233 322 0 23 chr4_random 11823131 11823308 -7028505 + T-rich Low_complexity Low_complexity 4 176 0 2177 178 33 21 chr4_random 11823310 11823731 -7028082 + MSTB LTR MaLR 1 426 0 192 77 0 0 chr4_random 11824131 11824157 -7027656 + (T)n Simple_repeat Simple_repeat 1 26 0 329 215 27 47 chr4_random 11824183 11824332 -7027481 - L1MC5 LINE L1 -205 7756 7611 1467 33 11 0 chr4_random 11824434 11824614 -7027199 - L1PA4 LINE L1 0 6155 5974 5869 207 31 52 chr4_random 11824714 11825796 -7026017 - L1P4 LINE L1 -671 6198 5181 372 43 0 0 chr4_random 11825796 11825842 -7025971 + (TG)n Simple_repeat Simple_repeat 2 47 0 5869 207 31 52 chr4_random 11825842 11826817 -7024996 - L1P4 LINE L1 -1688 5181 4187 737 307 8 0 chr4_random 11826817 11827081 -7024732 - L1 LINE L1 -3381 2765 2500 5546 218 22 14 chr4_random 11827087 11829037 -7022776 - L1P4 LINE L1 -4944 1905 282 467 136 0 0 chr4_random 11829168 11829234 -7022579 + AluS SINE Alu 1 66 -247 900 222 105 80 chr4_random 11829237 11829876 -7021937 + MER52A LTR ERV1 663 1459 -296 407 335 0 6 chr4_random 11829889 11830050 -7021763 + MER52A LTR ERV1 1596 1755 0 1698 171 3 0 chr4_random 11830215 11830507 -7021306 + MER52A-int LTR ERV1 169 461 -6630 2576 99 99 11 chr4_random 11830508 11830944 -7020869 - MER9 LTR ERVK 0 511 38 405 0 0 0 chr4_random 11830952 11830997 -7020816 + (CA)n Simple_repeat Simple_repeat 2 46 0 2439 155 12 2 chr4_random 11831000 11831407 -7020406 + MER52A-int LTR ERV1 478 888 -6203 22628 189 46 52 chr4_random 11831443 11833684 -7018129 + MER52A-int LTR ERV1 926 3179 -3912 1599 215 0 0 chr4_random 11833684 11834000 -7017813 + AluYb8 SINE Alu 3 318 0 22628 189 46 52 chr4_random 11834000 11835504 -7016309 + MER52A-int LTR ERV1 3179 4691 -2400 264 68 23 0 chr4_random 11835504 11835548 -7016265 + MADE1 DNA Mariner 1 45 -35 22628 189 46 52 chr4_random 11835548 11837521 -7014292 + MER52A-int LTR ERV1 4691 6862 -229 1783 189 46 41 chr4_random 11837521 11838067 -7013746 - MLT2A2 LTR ERVL 0 554 1 804 204 0 0 chr4_random 11838067 11838239 -7013574 - HERVL-A2 LTR ERVL 0 5654 5483 15744 33 6 1 chr4_random 11838239 11840260 -7011553 + L1P LINE L1 3221 5250 -896 355 75 0 0 chr4_random 11840274 11840327 -7011486 + L1PA4 LINE L1 6103 6155 0 4734 114 12 11 chr4_random 11840327 11841065 -7010748 - HERVL-A2 LTR ERVL -162 5492 4754 28390 127 12 6 chr4_random 11841165 11845623 -7006190 - HERVL-A2 LTR ERVL -1168 4486 1 1741 192 34 58 chr4_random 11845623 11845662 -7006151 - MLT2A2 LTR ERVL 0 554 516 546 16 0 0 chr4_random 11845662 11845725 -7006088 + (TA)n Simple_repeat Simple_repeat 1 63 0 1741 192 34 58 chr4_random 11845725 11846234 -7005579 - MLT2A2 LTR ERVL -38 516 1 1269 156 17 4 chr4_random 11846234 11846465 -7005348 + MER52A-int LTR ERV1 6858 7091 0 844 219 57 70 chr4_random 11846471 11846699 -7005114 + MER52A LTR ERV1 667 891 -864 650 258 23 148 chr4_random 11846714 11847152 -7004661 + MER52A LTR ERV1 1089 1471 -284 441 253 32 32 chr4_random 11847154 11847312 -7004501 + MER52A LTR ERV1 1598 1755 0 1381 201 0 0 chr4_random 11847405 11847644 -7004169 + AluSx SINE Alu 63 301 -11 263 116 0 0 chr4_random 11847644 11847687 -7004126 + L1MC/D LINE L1 5823 5865 -468 614 123 9 9 chr4_random 11848307 11848421 -7003392 - Tigger1 DNA MER2_type -135 2283 2170 * 3436 165 24 99 chr4_random 11848418 11849329 -7002484 - Tigger1 DNA MER2_type -1574 844 2 2251 122 0 0 chr4_random 11849578 11849881 -7001932 + AluSx SINE Alu 1 303 -9 23 54 0 0 chr4_random 11850294 11850331 -7001482 + AT_rich Low_complexity Low_complexity 1 37 0 3471 173 13 12 chr4_random 11851274 11851332 -7000481 - L1PA16 LINE L1 -278 5888 5832 1874 142 155 11 chr4_random 11851332 11851706 -7000107 + MSTA LTR MaLR 1 428 0 3471 173 13 12 chr4_random 11851706 11852457 -6999356 - L1PA16 LINE L1 -334 5832 5078 551 123 31 0 chr4_random 11852455 11852573 -6999240 + L1PA16 LINE L1 5843 5972 -202 * 816 230 22 0 chr4_random 11852673 11852851 -6998962 + L1PA16 LINE L1 5976 6157 -9 22 35 0 0 chr4_random 11853328 11853357 -6998456 + AT_rich Low_complexity Low_complexity 1 29 0 227 239 18 61 chr4_random 11853657 11853820 -6997993 + A-rich Low_complexity Low_complexity 2 157 0 1869 173 0 6 chr4_random 11854070 11854382 -6997431 - AluSx SINE Alu -2 310 1 21 36 0 0 chr4_random 11854390 11854418 -6997395 + AT_rich Low_complexity Low_complexity 1 28 0 1560 176 30 49 chr4_random 11855027 11855463 -6996350 + THE1C LTR MaLR 1 426 -2 1124 237 113 91 chr4_random 11855644 11856281 -6995532 + MLT1E1 LTR MaLR 1 651 -3 1905 186 39 14 chr4_random 11856440 11856795 -6995018 + THE1B LTR MaLR 1 364 0 10663 130 2 4 chr4_random 11856795 11858377 -6993436 + THE1B-int LTR MaLR 1 1580 0 2152 148 43 6 chr4_random 11858377 11858728 -6993085 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr4_random 11859495 11859516 -6992297 + AT_rich Low_complexity Low_complexity 1 21 0 1140 204 23 0 chr4_random 11860805 11861021 -6990792 - L1PA15-16 LINE L1 -6624 225 5 1671 243 38 20 chr4_random 11861021 11861527 -6990286 + LTR49-int LTR ERV1 2965 3479 -2852 315 282 0 15 chr4_random 11861526 11861657 -6990156 + LTR49-int LTR ERV1 2815 2943 -1937 * 2451 179 43 37 chr4_random 11861695 11862575 -6989238 + LTR49-int LTR ERV1 3166 4663 -1668 1735 154 13 10 chr4_random 11862574 11862885 -6988928 + LTR49-int LTR ERV1 5037 5348 -983 * 40546 37 21 1 chr4_random 11862885 11868917 -6982896 - L1PA2 LINE L1 0 6155 1 697 227 32 0 chr4_random 11868919 11869104 -6982709 + LTR49-int LTR ERV1 5342 5532 -799 * 3633 175 30 4 chr4_random 11869102 11869777 -6982036 + LTR49-int LTR ERV1 5637 6328 -3 2160 204 117 8 chr4_random 11869788 11870308 -6981505 + LTR49 LTR ERV1 9 585 -10 231 36 0 0 chr4_random 11870661 11870689 -6981124 + (A)n Simple_repeat Simple_repeat 1 28 0 222 256 16 24 chr4_random 11870968 11871093 -6980720 + (TTTA)n Simple_repeat Simple_repeat 3 126 0 21 0 0 0 chr4_random 11871160 11871181 -6980632 + AT_rich Low_complexity Low_complexity 1 21 0 487 349 18 66 chr4_random 11871192 11871648 -6980165 - HAL1b LINE L1 -696 652 219 1226 185 124 37 chr4_random 11871662 11872002 -6979811 + THE1C LTR MaLR 5 372 -3 192 40 0 0 chr4_random 11872002 11872027 -6979786 + (TA)n Simple_repeat Simple_repeat 1 25 0 338 188 150 0 chr4_random 11872027 11872107 -6979706 + THE1A LTR MaLR 261 352 -3 393 58 0 0 chr4_random 11872107 11872159 -6979654 + (TA)n Simple_repeat Simple_repeat 1 52 0 475 303 49 7 chr4_random 11873525 11873667 -6978146 + MIR SINE MIR 84 231 -31 25 75 0 0 chr4_random 11873747 11873800 -6978013 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr4_random 11873852 11873873 -6977940 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr4_random 11874019 11874050 -6977763 + AT_rich Low_complexity Low_complexity 1 31 0 33 80 0 0 chr4_random 11874337 11874412 -6977401 + AT_rich Low_complexity Low_complexity 1 75 0 3312 202 37 20 chr4_random 11874704 11875506 -6976307 - L1MA9 LINE L1 -20 6292 5477 21 0 0 0 chr4_random 11875730 11875751 -6976062 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr4_random 11877432 11877456 -6974357 + AT_rich Low_complexity Low_complexity 1 24 0 211 341 58 40 chr4_random 11877805 11877978 -6973835 + L2 LINE L2 603 778 -2536 33 0 0 0 chr4_random 11878711 11878744 -6973069 + AT_rich Low_complexity Low_complexity 1 33 0 265 299 37 9 chr4_random 11878983 11879090 -6972723 - L1MEc LINE L1 -3892 2829 2720 213 125 0 25 chr4_random 11879133 11879173 -6972640 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 302 258 25 68 chr4_random 11879175 11879338 -6972475 - L1MEc LINE L1 -3909 2631 2476 6776 235 32 33 chr4_random 11879407 11879821 -6971992 - L1MCa LINE L1 -1199 5227 4814 3787 93 32 47 chr4_random 11879821 11880436 -6971377 - LTR14B LTR ERVK 0 608 3 6776 235 32 33 chr4_random 11880436 11882313 -6969500 - L1MCa LINE L1 -1612 4814 2938 10684 188 43 3 chr4_random 11882314 11884434 -6967379 - Tigger1 DNA MER2_type 0 2418 215 664 242 69 4 chr4_random 11884437 11884677 -6967136 - L1MCa LINE L1 -3618 2808 2566 1161 142 5 0 chr4_random 11884680 11884870 -6966943 - Tigger1 DNA MER2_type -1407 1011 821 8061 211 93 43 chr4_random 11884877 11886443 -6965370 - L1MCa LINE L1 -3892 2534 807 252 0 0 0 chr4_random 11886443 11886471 -6965342 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 8061 211 93 43 chr4_random 11886471 11887293 -6964520 - L1MCa LINE L1 -5619 807 27 37 0 0 0 chr4_random 11887401 11887438 -6964375 + AT_rich Low_complexity Low_complexity 1 37 0 691 361 24 38 chr4_random 11887801 11888253 -6963560 - MLT2F LTR ERVL 0 663 218 31 58 0 0 chr4_random 11888493 11888545 -6963268 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr4_random 11888814 11888837 -6962976 + AT_rich Low_complexity Low_complexity 1 23 0 408 295 54 7 chr4_random 11888847 11888996 -6962817 - MIR SINE MIR -99 163 8 5677 89 9 39 chr4_random 11889197 11890489 -6961324 - L1PA8 LINE L1 0 6172 4837 25730 142 41 77 chr4_random 11890590 11891680 -6960133 - L1P3 LINE L1 -404 5768 4640 2159 104 3 20 chr4_random 11891680 11891979 -6959834 - AluSx SINE Alu -17 295 2 25730 142 41 77 chr4_random 11891979 11894131 -6957682 - L1P3 LINE L1 -1532 4640 2412 373 174 4 22 chr4_random 11894131 11894214 -6957599 - AluSg/x SINE Alu -110 192 141 25730 142 41 77 chr4_random 11894214 11895653 -6956160 - L1P3 LINE L1 -3760 2412 1273 201 39 0 0 chr4_random 11895653 11895679 -6956134 + (TTG)n Simple_repeat Simple_repeat 2 27 0 25730 142 41 77 chr4_random 11895679 11896908 -6954905 - L1P3 LINE L1 -4899 1273 1 3461 203 48 4 chr4_random 11897010 11897805 -6954008 - L1 LINE L1 -1515 4631 3802 * 4886 174 42 22 chr4_random 11897797 11899199 -6952614 + L1PA16 LINE L1 4745 6166 0 485 374 43 28 chr4_random 11901111 11901571 -6950242 + MLT1J LTR MaLR 6 472 -39 496 302 79 0 chr4_random 11901645 11901774 -6950039 + MER3 DNA MER1_type 2 152 -57 180 0 0 0 chr4_random 11901774 11901794 -6950019 + (TTTTA)n Simple_repeat Simple_repeat 1 20 0 496 302 79 0 chr4_random 11901794 11901853 -6949960 + MER3 DNA MER1_type 152 205 -4 322 270 135 88 chr4_random 11901944 11902159 -6949654 + L1MC4 LINE L1 7548 7772 -270 5858 165 49 23 chr4_random 11902163 11902201 -6949612 - L1MA3 LINE L1 0 7724 7688 1843 128 39 4 chr4_random 11902201 11902482 -6949331 - AluSx SINE Alu -21 291 1 5858 165 49 23 chr4_random 11902482 11903149 -6948664 - L1MA3 LINE L1 -36 7688 7040 1301 194 68 32 chr4_random 11903149 11903287 -6948526 - AluJb SINE Alu -23 289 157 1840 99 0 16 chr4_random 11903287 11903539 -6948274 - AluY SINE Alu -13 298 51 1301 194 68 32 chr4_random 11903539 11903679 -6948134 - AluJb SINE Alu -155 157 1 5858 165 49 23 chr4_random 11903679 11904065 -6947748 - L1MA3 LINE L1 -684 7040 6586 218 81 27 0 chr4_random 11904065 11904102 -6947711 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 5858 165 49 23 chr4_random 11904102 11904302 -6947511 - L1MA3 LINE L1 -1138 6586 6393 1248 223 14 3 chr4_random 11904301 11904592 -6947221 - L1MA3 LINE L1 -2582 4983 4690 * 449 133 0 0 chr4_random 11904593 11904668 -6947145 - AluS SINE Alu -5 307 233 10840 192 27 31 chr4_random 11904668 11904699 -6947114 - L1MA3 LINE L1 -4228 3337 3307 204 97 0 0 chr4_random 11904699 11904730 -6947083 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 10840 192 27 31 chr4_random 11904730 11907613 -6944200 - L1MA3 LINE L1 -4258 3307 74 440 319 62 19 chr4_random 11908762 11908972 -6942841 + L1MCc LINE L1 1071 1289 -5134 1381 352 44 21 chr4_random 11909810 11910665 -6941148 - HERV16 LTR ERVL -1923 3073 2199 6098 185 84 11 chr4_random 11910713 11912170 -6939643 - L1M4c LINE L1 -4101 2283 720 569 360 51 26 chr4_random 11912254 11912721 -6939092 - HERV16 LTR ERVL -4182 814 336 301 286 51 0 chr4_random 11912903 11913001 -6938812 - HERV16 LTR ERVL -4881 115 13 466 358 57 29 chr4_random 11913033 11913452 -6938361 - LTR16A LTR ERVL -6 444 14 220 336 136 42 chr4_random 11913847 11914061 -6937752 + L2 LINE L2 1007 1240 -2074 211 350 112 56 chr4_random 11914123 11914256 -6937557 + L2 LINE L2 1372 1496 -1818 4135 174 61 8 chr4_random 11914256 11915009 -6936804 + MER54B LTR ERVL 1 793 0 211 350 112 56 chr4_random 11915009 11915161 -6936652 + L2 LINE L2 1496 1673 -1641 287 323 54 36 chr4_random 11915283 11915450 -6936363 + L2 LINE L2 1812 1981 -1333 222 37 0 0 chr4_random 11915457 11915484 -6936329 + (TA)n Simple_repeat Simple_repeat 2 28 0 246 281 0 42 chr4_random 11917151 11917247 -6934566 - MLT2F LTR ERVL -41 622 531 183 314 0 0 chr4_random 11918376 11918427 -6933386 - L2 LINE L2 -3 3269 3219 478 292 89 25 chr4_random 11920849 11921051 -6930762 - MIR SINE MIR 0 262 48 278 141 0 16 chr4_random 11921579 11921643 -6930170 + (TA)n Simple_repeat Simple_repeat 1 63 0 3971 192 46 37 chr4_random 11921673 11922705 -6929108 - L1MD1 LINE L1 -35 6207 5161 3815 280 106 4 chr4_random 11922706 11923369 -6928444 - L1MDa LINE L1 -5016 1524 930 2139 92 48 0 chr4_random 11923369 11923545 -6928268 - AluY SINE Alu -2 309 112 305 24 24 0 chr4_random 11923545 11923587 -6928226 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2139 92 48 0 chr4_random 11923587 11923705 -6928108 - AluY SINE Alu -199 112 1 3815 280 106 4 chr4_random 11923705 11924408 -6927405 - L1MDa LINE L1 -5610 930 19 31 26 0 0 chr4_random 11925429 11925467 -6926346 + AT_rich Low_complexity Low_complexity 1 38 0 25 70 0 14 chr4_random 11925510 11925550 -6926263 + AT_rich Low_complexity Low_complexity 1 41 -29 964 191 183 34 chr4_random 11925550 11925812 -6926001 + AluJo SINE Alu 2 302 0 25 70 0 14 chr4_random 11925812 11925842 -6925971 + AT_rich Low_complexity Low_complexity 41 70 0 1959 291 116 42 chr4_random 11926634 11927416 -6924397 + L1MEc LINE L1 49 771 -5625 206 62 31 0 chr4_random 11927416 11927448 -6924365 + (TA)n Simple_repeat Simple_repeat 1 33 0 1959 291 116 42 chr4_random 11927448 11928356 -6923457 + L1MEc LINE L1 771 1884 -4512 2422 81 3 0 chr4_random 11928356 11928663 -6923150 + AluSp SINE Alu 1 308 -5 1959 291 116 42 chr4_random 11928663 11928772 -6923041 + L1MEc LINE L1 1884 1983 -4413 21 71 0 0 chr4_random 11928821 11928863 -6922950 + AT_rich Low_complexity Low_complexity 1 42 0 1303 215 92 6 chr4_random 11929011 11929327 -6922486 + MLT2C1 LTR ERVL 1 343 -54 203 182 40 50 chr4_random 11929327 11929426 -6922387 + (TATAA)n Simple_repeat Simple_repeat 3 100 0 10737 188 22 10 chr4_random 11929473 11931443 -6920370 - ERVL LTR ERVL -1519 4245 2252 23 33 0 0 chr4_random 11931732 11931762 -6920051 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr4_random 11931849 11931870 -6919943 + AT_rich Low_complexity Low_complexity 1 21 0 186 133 0 0 chr4_random 11932850 11932880 -6918933 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 22 70 0 0 chr4_random 11932997 11933040 -6918773 + AT_rich Low_complexity Low_complexity 1 43 0 1868 131 0 52 chr4_random 11933799 11934104 -6917709 + AluSq SINE Alu 1 289 -24 405 0 0 0 chr4_random 11934646 11934691 -6917122 + (TG)n Simple_repeat Simple_repeat 2 46 0 430 247 0 11 chr4_random 11934722 11934811 -6917002 - Tigger2 DNA MER2_type 0 2718 2631 3589 37 0 0 chr4_random 11935185 11935615 -6916198 + L1PA5 LINE L1 5718 6147 -7 27 29 0 0 chr4_random 11935615 11935649 -6916164 + AT_rich Low_complexity Low_complexity 1 34 0 1551 169 64 36 chr4_random 11936159 11936520 -6915293 + THE1C LTR MaLR 1 371 -4 9156 135 29 43 chr4_random 11936526 11938127 -6913686 + THE1C-int LTR MaLR 3 1580 0 1542 191 29 37 chr4_random 11938127 11938505 -6913308 + THE1C LTR MaLR 1 375 0 438 269 34 0 chr4_random 11938984 11939002 -6912811 - L1MA10 LINE L1 0 6334 6317 2371 263 51 14 chr4_random 11939002 11939993 -6911820 - L1ME1 LINE L1 -11 6224 5197 684 237 77 61 chr4_random 11940139 11940451 -6911362 - L1ME1 LINE L1 -3277 2938 2622 1618 142 200 11 chr4_random 11940451 11940811 -6911002 + MSTA LTR MaLR 1 428 0 8746 151 12 44 chr4_random 11940817 11942431 -6909382 + MSTA-int LTR MaLR 10 1571 -9 408 221 0 32 chr4_random 11942429 11942524 -6909289 + L1PA12 LINE L1 2979 3070 -4511 * 1263 161 244 34 chr4_random 11942530 11942883 -6908930 + MSTA LTR MaLR 1 427 -1 1094 252 26 14 chr4_random 11942883 11943228 -6908585 - L1ME1 LINE L1 -3589 2626 2278 407 295 122 12 chr4_random 11943230 11943484 -6908329 - L1ME1 LINE L1 -4112 2284 2003 465 290 70 14 chr4_random 11943519 11943733 -6908080 - L1ME1 LINE L1 -4486 1910 1685 1123 292 83 39 chr4_random 11943817 11944664 -6907149 - L1ME3A LINE L1 -1 6169 5286 22 0 0 0 chr4_random 11944945 11944967 -6906846 + AT_rich Low_complexity Low_complexity 1 22 0 267 308 58 17 chr4_random 11945447 11945619 -6906194 - L1ME LINE L1 -311 5859 5681 21 0 0 0 chr4_random 11945619 11945640 -6906173 + AT_rich Low_complexity Low_complexity 1 21 0 216 67 0 0 chr4_random 11946410 11946440 -6905373 + (TA)n Simple_repeat Simple_repeat 1 30 0 23 78 0 0 chr4_random 11947670 11947721 -6904092 + AT_rich Low_complexity Low_complexity 1 51 0 25 51 0 0 chr4_random 11947810 11947849 -6903964 + AT_rich Low_complexity Low_complexity 1 39 0 1765 112 4 16 chr4_random 11948559 11948817 -6902996 + AluSx SINE Alu 1 255 -57 219 36 0 0 chr4_random 11948860 11948888 -6902925 + (TG)n Simple_repeat Simple_repeat 2 29 0 499 308 52 19 chr4_random 11949009 11949220 -6902593 + MIR SINE MIR 44 261 -1 315 0 0 0 chr4_random 11949774 11949809 -6902004 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 414 57 0 0 chr4_random 11952507 11952552 -6899261 + (TG)n Simple_repeat Simple_repeat 1 98 0 414 57 0 0 chr4_random 11952552 11952605 -6899208 + (TG)n Simple_repeat Simple_repeat 2 54 0 406 210 0 0 chr4_random 11953767 11953848 -6897965 + FLAM_C SINE Alu 36 116 -27 997 57 34 23 chr4_random 11953852 11954029 -6897784 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 572 233 0 23 chr4_random 11954120 11954249 -6897564 + FRAM SINE Alu 38 163 -13 311 214 0 43 chr4_random 11954655 11954725 -6897088 - MER58 DNA MER1_type -7 2413 2347 2003 120 66 29 chr4_random 11954743 11955080 -6896733 + THE1B LTR MaLR 1 324 -108 9625 103 22 93 chr4_random 11955080 11956781 -6895032 + THE1B-int LTR MaLR 2 1580 0 2139 120 48 28 chr4_random 11956781 11957138 -6894675 + THE1B LTR MaLR 1 364 0 436 280 9 0 chr4_random 11957138 11957245 -6894568 - MER58A DNA MER1_type 0 110 3 27 73 0 0 chr4_random 11957683 11957738 -6894075 + AT_rich Low_complexity Low_complexity 1 55 0 1763 203 37 81 chr4_random 11957798 11958306 -6893507 + MER66B LTR ERV1 1 486 0 795 219 6 18 chr4_random 11960649 11960818 -6890995 + AluJb SINE Alu 142 308 -4 22 35 0 0 chr4_random 11960874 11960903 -6890910 + AT_rich Low_complexity Low_complexity 1 29 0 468 0 0 0 chr4_random 11961241 11961293 -6890520 + (TA)n Simple_repeat Simple_repeat 2 53 0 1087 323 89 23 chr4_random 11961544 11962718 -6889095 + ERVL LTR ERVL 3116 4407 -1357 2820 236 40 39 chr4_random 11962738 11963653 -6888160 - L1MB8 LINE L1 -1 6177 5264 524 232 16 0 chr4_random 11963653 11963778 -6888035 + FLAM_C SINE Alu 1 127 -6 220 27 54 0 chr4_random 11963782 11963819 -6887994 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 2820 236 40 39 chr4_random 11963819 11963969 -6887844 - L1MB8 LINE L1 -916 5262 5101 1168 227 35 13 chr4_random 11963968 11964285 -6887528 + L1 LINE L1 3455 3778 -2368 * 5223 166 30 26 chr4_random 11964293 11965917 -6885896 + L1PA16 LINE L1 4543 6159 -7 491 217 63 42 chr4_random 11965917 11966106 -6885707 - L1MB8 LINE L1 -1043 5103 4911 678 308 136 40 chr4_random 11966201 11966597 -6885216 - L1M4b LINE L1 -6294 565 132 398 230 44 26 chr4_random 11966708 11966821 -6884992 + ERVL LTR ERVL 4400 4514 -1250 224 231 19 0 chr4_random 11967128 11967180 -6884633 + (TG)n Simple_repeat Simple_repeat 2 54 0 284 250 24 36 chr4_random 11967576 11967660 -6884153 + MLT2C2 LTR ERVL 43 125 -503 29 47 0 0 chr4_random 11968175 11968218 -6883595 + AT_rich Low_complexity Low_complexity 1 43 0 23 33 0 0 chr4_random 11969023 11969053 -6882760 + AT_rich Low_complexity Low_complexity 1 30 0 923 307 71 86 chr4_random 11969954 11971007 -6880806 + L2 LINE L2 2291 3313 0 35 54 0 0 chr4_random 11971132 11971188 -6880625 + AT_rich Low_complexity Low_complexity 1 56 0 33 0 0 0 chr4_random 11971681 11971714 -6880099 + AT_rich Low_complexity Low_complexity 1 33 0 195 277 21 0 chr4_random 11973487 11973534 -6878279 + MIR SINE MIR 56 103 -159 2626 57 3 0 chr4_random 11973534 11973868 -6877945 + L1PA5 LINE L1 5816 6150 -4 25 51 0 0 chr4_random 11974321 11974360 -6877453 + AT_rich Low_complexity Low_complexity 1 39 0 221 293 35 0 chr4_random 11974593 11974651 -6877162 + MIR SINE MIR 203 262 0 231 265 73 0 chr4_random 11974756 11974824 -6876989 - L2 LINE L2 -44 3228 3156 646 193 23 6 chr4_random 11975011 11975187 -6876626 - MER53 DNA DNA 0 189 11 244 241 0 0 chr4_random 11975671 11975729 -6876084 + (TTA)n Simple_repeat Simple_repeat 1 58 0 240 161 0 0 chr4_random 11975758 11975820 -6875993 + CT-rich Low_complexity Low_complexity 2 63 0 7042 53 4 3 chr4_random 11976196 11977171 -6874642 + L1PA5 LINE L1 5179 6154 0 630 211 0 0 chr4_random 11977176 11977290 -6874523 + MLT2C2 LTR ERVL 191 304 -160 30 83 0 0 chr4_random 11977686 11977758 -6874055 + AT_rich Low_complexity Low_complexity 1 72 0 7627 21 1 0 chr4_random 11977787 11979226 -6872587 - L1PA3 LINE L1 0 6155 4712 25 0 0 0 chr4_random 11979648 11979673 -6872140 + AT_rich Low_complexity Low_complexity 1 25 0 189 213 0 0 chr4_random 11980015 11980062 -6871751 + (TA)n Simple_repeat Simple_repeat 2 48 0 190 289 39 0 chr4_random 11980160 11980212 -6871601 - L2 LINE L2 -17 3255 3202 242 216 14 0 chr4_random 11981422 11981496 -6870317 + GA-rich Low_complexity Low_complexity 3 77 0 408 256 116 56 chr4_random 11981506 11981776 -6870037 + LTR8 LTR ERV1 1 286 -441 564 291 146 34 chr4_random 11981779 11982216 -6869597 + LTR8A LTR ERV1 119 727 0 971 239 77 27 chr4_random 11982510 11982769 -6869044 + MLT1A1 LTR MaLR 1 272 -93 998 179 54 0 chr4_random 11983358 11983542 -6868271 - LOR1a LTR ERV1 0 497 304 871 176 69 73 chr4_random 11983529 11983762 -6868051 - LOR1b LTR ERV1 -229 232 1 * 669 267 82 96 chr4_random 11983773 11983819 -6867994 - L1ME3A LINE L1 -168 6002 5957 3347 140 8 10 chr4_random 11983819 11984341 -6867472 + MER1A DNA MER1_type 5 525 -2 669 267 82 96 chr4_random 11984341 11984633 -6867180 - L1ME3A LINE L1 -213 5957 5663 238 173 0 0 chr4_random 11984633 11984685 -6867128 + LTR66 LTR ERVL 394 445 -165 669 267 82 96 chr4_random 11984685 11985153 -6866660 - L1ME3A LINE L1 -507 5663 5139 405 307 7 0 chr4_random 11985343 11985480 -6866333 + L1M4 LINE L1 5096 5233 -913 3293 213 45 9 chr4_random 11985488 11986506 -6865307 + L1MB7 LINE L1 5129 6181 -3 273 75 0 0 chr4_random 11986631 11986671 -6865142 + (TG)n Simple_repeat Simple_repeat 1 40 0 248 82 0 41 chr4_random 11986677 11986726 -6865087 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 603 266 96 28 chr4_random 11987592 11988003 -6863810 + MER57A LTR ERV1 20 403 0 180 0 0 0 chr4_random 11988834 11988854 -6862959 + (CAA)n Simple_repeat Simple_repeat 2 21 0 32 26 0 0 chr4_random 11988854 11988893 -6862920 + AT_rich Low_complexity Low_complexity 1 39 0 556 229 7 14 chr4_random 11988893 11989033 -6862780 + MER57A-int LTR ERV1 294 432 -4504 943 216 111 44 chr4_random 11989176 11989565 -6862248 + MER57A-int LTR ERV1 1052 1466 -3470 288 244 39 0 chr4_random 11989682 11989760 -6862053 + MER34 LTR ERV1 133 213 -329 22 35 0 0 chr4_random 11989760 11989789 -6862024 + AT_rich Low_complexity Low_complexity 1 29 0 586 247 113 53 chr4_random 11989841 11990294 -6861519 + MER57A-int LTR ERV1 1874 2353 -2583 191 36 36 0 chr4_random 11990315 11990343 -6861470 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 419 315 0 0 chr4_random 11990368 11990495 -6861318 + MER57-int LTR ERV1 6866 6992 -545 1853 79 4 0 chr4_random 11990495 11990748 -6861065 - L1P LINE L1 -1502 4644 4391 * 3602 79 0 41 chr4_random 11990746 11991279 -6860534 + L1P LINE L1 4665 5175 -971 2157 84 3 34 chr4_random 11991805 11992126 -6859687 - AluY SINE Alu 0 311 1 39 22 0 0 chr4_random 11992916 11992962 -6858851 + AT_rich Low_complexity Low_complexity 1 46 0 268 279 30 12 chr4_random 11992969 11993134 -6858679 + HAL1b LINE L1 929 1096 -252 349 314 72 28 chr4_random 11994156 11994395 -6857418 - L1M1 LINE L1 -775 5371 5144 1447 204 3 39 chr4_random 11994395 11994704 -6857109 - AluJb SINE Alu -4 298 1 349 314 72 28 chr4_random 11994704 11994975 -6856838 - L1M1 LINE L1 -1002 5144 4898 1019 246 19 35 chr4_random 11994981 11995298 -6856515 + L1M4 LINE L1 3965 4276 -1870 1471 245 93 8 chr4_random 11995356 11995732 -6856081 + MER74A LTR ERVL 24 431 -127 * 1605 140 6 60 chr4_random 11995729 11996043 -6855770 + Tigger2 DNA MER2_type 2376 2672 -46 2302 59 3 10 chr4_random 11996058 11996364 -6855449 - AluY SINE Alu -7 304 1 432 292 124 22 chr4_random 11996566 11996751 -6855062 + L2 LINE L2 2746 2949 -365 1824 130 39 3 chr4_random 11996767 11997052 -6854761 - AluSg SINE Alu -15 295 1 1837 197 8 14 chr4_random 11997162 11997294 -6854519 + MER47A DNA MER2_type 2 133 -2190 1576 180 14 32 chr4_random 11997294 11997639 -6854174 - MER44D DNA MER2_type 0 609 1 1837 197 8 14 chr4_random 11997639 11997872 -6853941 + MER47A DNA MER2_type 133 365 -1 213 94 0 0 chr4_random 11997937 11997969 -6853844 + (TA)n Simple_repeat Simple_repeat 2 33 0 213 118 59 0 chr4_random 11998305 11998356 -6853457 + (TA)n Simple_repeat Simple_repeat 1 54 0 229 419 63 14 chr4_random 11999163 11999385 -6852428 + L2 LINE L2 2668 2900 -414 244 352 83 0 chr4_random 11999776 11999884 -6851929 - L2 LINE L2 -41 3272 3156 198 0 0 0 chr4_random 12000353 12000375 -6851438 + (TG)n Simple_repeat Simple_repeat 1 22 0 23 0 0 0 chr4_random 12001324 12001347 -6850466 + AT_rich Low_complexity Low_complexity 1 23 0 21 21 0 64 chr4_random 12002031 12002078 -6849735 + AT_rich Low_complexity Low_complexity 1 44 0 30 83 0 0 chr4_random 12003562 12003634 -6848179 + AT_rich Low_complexity Low_complexity 1 72 0 326 186 12 0 chr4_random 12003665 12003751 -6848062 + (TA)n Simple_repeat Simple_repeat 2 88 0 1258 209 30 4 chr4_random 12004013 12004281 -6847532 + L1PA16 LINE L1 5888 6162 -4 293 300 25 6 chr4_random 12004420 12004580 -6847233 + L1MEc LINE L1 1254 1416 -4980 2004 163 32 12 chr4_random 12004705 12005385 -6846428 + L1PA16 LINE L1 5389 6163 -3 1264 262 209 50 chr4_random 12005686 12006625 -6845188 - MER52A LTR ERV1 0 1755 668 231 158 26 13 chr4_random 12006659 12006735 -6845078 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 29 0 0 0 chr4_random 12006809 12006838 -6844975 + AT_rich Low_complexity Low_complexity 1 29 0 192 77 0 0 chr4_random 12006876 12006902 -6844911 + (TA)n Simple_repeat Simple_repeat 1 26 0 2384 204 16 0 chr4_random 12006906 12007395 -6844418 - L1MB3 LINE L1 -30 6153 5657 21 36 0 0 chr4_random 12007595 12007623 -6844190 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr4_random 12007897 12007919 -6843894 + AT_rich Low_complexity Low_complexity 1 22 0 1786 263 105 34 chr4_random 12008222 12009223 -6842590 - L1ME3A LINE L1 -22 6148 5039 953 63 0 0 chr4_random 12009320 12009447 -6842366 + L1PA4 LINE L1 6026 6152 -3 631 295 40 9 chr4_random 12009493 12009784 -6842029 - L1ME3A LINE L1 -1277 4869 4570 734 258 52 28 chr4_random 12009805 12010018 -6841795 + MER20 DNA MER1_type 2 219 0 608 301 93 31 chr4_random 12010018 12010967 -6840846 - L1ME3A LINE L1 -1595 4551 3544 22 0 0 0 chr4_random 12011444 12011466 -6840347 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr4_random 12012318 12012339 -6839474 + AT_rich Low_complexity Low_complexity 1 21 0 1023 227 80 67 chr4_random 12013334 12013797 -6838016 + Charlie1b DNA MER1_type 50 518 -5 213 154 0 0 chr4_random 12013832 12013871 -6837942 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1278 264 8 21 chr4_random 12014121 12014500 -6837313 + MLT1A2 LTR MaLR 1 374 0 6106 47 0 1 chr4_random 12016930 12017707 -6834106 - L1PA4 LINE L1 0 6155 5402 7830 47 9 1 chr4_random 12018694 12020451 -6831362 - L1PA5 LINE L1 -4 6150 4390 282 246 0 0 chr4_random 12021034 12021091 -6830722 - L2 LINE L2 -646 2668 2612 1370 190 207 17 chr4_random 12021105 12021515 -6830298 - MER34 LTR ERV1 -28 514 27 396 207 47 18 chr4_random 12021566 12021735 -6830078 + (TA)n Simple_repeat Simple_repeat 1 174 0 2213 229 54 116 chr4_random 12021786 12022945 -6828868 - MER52A LTR ERV1 -2 1753 666 654 349 50 33 chr4_random 12022951 12023430 -6828383 - L2 LINE L2 -796 2518 2032 674 362 79 3 chr4_random 12026779 12027146 -6824667 - LTR16C LTR ERVL 0 491 97 2218 108 42 31 chr4_random 12027675 12028035 -6823778 + THE1B LTR MaLR 1 364 0 2266 109 3 3 chr4_random 12028642 12028955 -6822858 - AluSp SINE Alu 0 313 1 233 270 14 0 chr4_random 12029407 12029481 -6822332 + (CAT)n Simple_repeat Simple_repeat 3 77 0 464 253 84 44 chr4_random 12030033 12030266 -6821547 + L1MCa LINE L1 955 1351 -5065 486 242 39 74 chr4_random 12030293 12030524 -6821289 + L1MCa LINE L1 1258 1480 -4946 248 180 0 0 chr4_random 12030604 12030654 -6821159 + L1MCa LINE L1 1639 1688 -4738 459 289 114 19 chr4_random 12030759 12031170 -6820643 + L1MCa LINE L1 2038 2487 -4120 751 282 83 52 chr4_random 12031170 12032155 -6819658 + L1MCc LINE L1 855 1862 -4890 284 250 11 0 chr4_random 12032169 12032257 -6819556 + L1MCc LINE L1 2033 2121 -4820 526 209 99 50 chr4_random 12032284 12032485 -6819328 + L1MCc LINE L1 3299 3509 -3432 284 255 121 21 chr4_random 12032537 12032678 -6819135 + MER5C DNA MER1_type 166 320 -4 23 54 0 0 chr4_random 12033116 12033153 -6818660 + AT_rich Low_complexity Low_complexity 1 37 0 6292 22 0 7 chr4_random 12033432 12034169 -6817644 + L1PA3 LINE L1 5413 6144 -11 243 0 0 0 chr4_random 12034169 12034196 -6817617 + (TTAA)