6743 147 46 2 chr3 0 719 -218036439 + Tigger3b DNA MER2_type 1 794 -2234 2127 124 3 0 chr3 719 1017 -218036141 - AluSx SINE Alu -13 299 1 6743 147 46 2 chr3 1017 1476 -218035682 + Tigger3b DNA MER2_type 794 1231 0 21 0 0 0 chr3 1476 1497 -218035661 + AT_rich Low_complexity Low_complexity 1 21 0 759 247 70 29 chr3 1609 1934 -218035224 - LTR33A LTR ERVL 0 523 149 265 343 102 0 chr3 1997 2134 -218035024 + MARNA DNA Mariner 70 220 -366 234 336 58 19 chr3 2483 2587 -218034571 - MIR SINE MIR -8 254 147 1553 186 16 19 chr3 2592 2903 -218034255 - AluJb SINE Alu -2 310 1 588 21 105 0 chr3 2945 3088 -218034070 + (TA)n Simple_repeat Simple_repeat 2 159 0 231 271 104 0 chr3 3282 3378 -218033780 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr3 3513 3537 -218033621 + AT_rich Low_complexity Low_complexity 1 24 0 242 273 0 0 chr3 3994 4049 -218033109 + L2 LINE L2 3257 3311 -2 2144 105 3 3 chr3 5086 5382 -218031776 + AluSc SINE Alu 1 296 -13 22579 43 5 4 chr3 5717 9160 -218027998 - L1PA5 LINE L1 -140 6014 2570 8688 91 11 12 chr3 9776 10112 -218027046 - L1P3 LINE L1 -337 5817 5482 2336 102 7 0 chr3 10112 10417 -218026741 - AluSg SINE Alu -3 307 1 8688 91 11 12 chr3 10417 11787 -218025371 - L1P3 LINE L1 -672 5482 4110 362 251 117 64 chr3 13354 13525 -218023633 + L3 LINE CR1 1077 1256 -321 279 0 0 0 chr3 13741 13772 -218023386 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 336 133 8 chr3 14189 14317 -218022841 + L2 LINE L2 3170 3313 0 239 203 29 14 chr3 14335 14404 -218022754 + GA-rich Low_complexity Low_complexity 3 72 0 313 318 16 8 chr3 14541 14670 -218022488 - MIR SINE MIR -10 252 123 239 202 0 43 chr3 17393 17487 -218019671 + CT-rich Low_complexity Low_complexity 4 93 0 2056 115 7 3 chr3 17713 18009 -218019149 + AluSq SINE Alu 1 297 -16 315 71 0 0 chr3 18377 18419 -218018739 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1873 147 31 0 chr3 18422 18708 -218018450 - AluSx SINE Alu -17 295 1 4666 179 55 50 chr3 18979 19136 -218018022 + L1MB3 LINE L1 185 340 -6044 243 0 0 0 chr3 19136 19163 -218017995 + (CAA)n Simple_repeat Simple_repeat 2 28 0 4666 179 55 50 chr3 19163 19343 -218017815 + L1MB3 LINE L1 340 518 -5866 2675 22 0 13 chr3 19343 19658 -218017500 - AluYa5 SINE Alu 0 311 1 4666 179 55 50 chr3 19658 20448 -218016710 + L1MB3 LINE L1 518 1319 -5065 * 6120 214 48 16 chr3 20442 22114 -218015044 + L1MB3 LINE L1 3909 5688 -731 2754 88 3 0 chr3 22114 22477 -218014681 + THE1B LTR MaLR 1 364 0 6120 214 48 16 chr3 22477 23231 -218013927 + L1MB3 LINE L1 5688 6416 -3 315 195 131 22 chr3 23260 23435 -218013723 - L1M LINE L1 -743 5403 5237 621 139 32 9 chr3 24448 24554 -218012604 - LTR12 LTR ERV1 -63 651 410 535 136 0 5 chr3 24567 24667 -218012491 + L1M3 LINE L1 5720 5816 -352 700 179 14 4 chr3 24667 24827 -218012331 - pTR5 LTR ERV1 -2122 316 49 257 274 0 0 chr3 24827 24900 -218012258 - LTR30 LTR ERV1 -98 624 552 1768 108 7 54 chr3 24902 25198 -218011960 - LTR12 LTR ERV1 -432 282 1 554 189 71 53 chr3 25277 25558 -218011600 - pTR5 LTR ERV1 -1410 1028 743 202 322 52 26 chr3 25583 25698 -218011460 + MIR3 SINE MIR 37 154 -54 402 243 0 18 chr3 25707 25826 -218011332 + MER69 DNA AcHobo 8 2469 -57 22 0 0 0 chr3 26392 26414 -218010744 + AT_rich Low_complexity Low_complexity 1 22 0 205 277 20 0 chr3 26414 26515 -218010643 + (TA)n Simple_repeat Simple_repeat 1 103 0 569 300 94 9 chr3 26600 26833 -218010325 + MIR SINE MIR 9 261 -1 355 244 13 0 chr3 27793 27871 -218009287 - MER117 DNA MER1_type -45 152 74 884 200 31 20 chr3 28692 28887 -218008271 - MER20 DNA MER1_type 0 219 23 228 333 0 0 chr3 28891 28951 -218008207 - MER20 DNA MER1_type -159 60 1 224 290 14 0 chr3 29158 29227 -218007931 + (TAG)n Simple_repeat Simple_repeat 1 70 0 255 250 0 42 chr3 29240 29312 -218007846 - MIR SINE MIR -76 186 118 203 204 19 0 chr3 30218 30272 -218006886 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 306 57 0 chr3 30319 30443 -218006715 + MIR SINE MIR 100 230 -32 185 400 0 18 chr3 32949 33059 -218004099 + MIR3 SINE MIR 92 199 -9 544 209 52 33 chr3 33240 33393 -218003765 - MER103 DNA DNA -1 165 10 476 300 81 37 chr3 33404 33867 -218003291 + LTR33 LTR ERVL 8 521 0 225 333 11 33 chr3 34177 34267 -218002891 - L2 LINE L2 -10 3262 3175 619 315 22 26 chr3 34339 34571 -218002587 - MIR SINE MIR -1 261 31 1284 175 0 9 chr3 34798 35026 -218002132 + L1PA16 LINE L1 5683 5908 -258 979 182 35 5 chr3 35127 35330 -218001828 + L1PA16 LINE L1 5941 6149 -17 37 23 0 0 chr3 35333 35377 -218001781 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr3 36908 36961 -218000197 + AT_rich Low_complexity Low_complexity 1 53 0 594 99 0 0 chr3 37177 37268 -217999890 + (TC)n Simple_repeat Simple_repeat 1 91 0 24 0 0 0 chr3 37456 37480 -217999678 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr3 37503 37545 -217999613 + (CA)n Simple_repeat Simple_repeat 2 43 0 245 182 0 0 chr3 38164 38208 -217998950 - L2 LINE L2 0 3313 3270 238 269 9 46 chr3 38885 38993 -217998165 - MER103 DNA DNA -55 111 8 1020 239 31 82 chr3 39362 39751 -217997407 - MLT1A2 LTR MaLR -5 369 1 386 283 51 36 chr3 40090 40228 -217996930 - L2 LINE L2 0 3272 3133 330 355 106 43 chr3 41807 42473 -217994685 + L2 LINE L2 2560 3255 -17 208 239 11 34 chr3 42475 42563 -217994595 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 261 0 33 chr3 42565 42657 -217994501 - L1MC4 LINE L1 -1340 6702 6614 36 77 0 0 chr3 42657 42735 -217994423 + AT_rich Low_complexity Low_complexity 1 78 0 2504 134 41 24 chr3 42752 43171 -217993987 + MSTB1 LTR MaLR 7 432 0 2007 110 3 14 chr3 44694 45001 -217992157 - AluSx SINE Alu 0 306 3 704 243 14 43 chr3 45377 45631 -217991527 + L1MC5 LINE L1 6573 6830 -1007 1426 174 9 0 chr3 45634 45858 -217991300 + AluSq SINE Alu 3 228 -85 404 230 101 14 chr3 46033 46181 -217990977 + L1MC5 LINE L1 7028 7188 -773 206 32 32 0 chr3 46305 46336 -217990822 + (CA)n Simple_repeat Simple_repeat 1 32 0 1006 248 56 55 chr3 46403 46495 -217990663 + L1MC5 LINE L1 7287 7377 -584 210 37 0 0 chr3 46495 46522 -217990636 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1006 248 56 55 chr3 46522 46793 -217990365 + L1MC5 LINE L1 7377 7646 -315 2284 89 14 0 chr3 46793 47085 -217990073 + AluSc SINE Alu 1 296 -13 1006 248 56 55 chr3 47085 47358 -217989800 + L1MC5 LINE L1 7646 7925 -36 1755 235 28 11 chr3 47580 48039 -217989119 - MLT1C LTR MaLR 0 467 1 273 29 0 0 chr3 48189 48223 -217988935 + (CAT)n Simple_repeat Simple_repeat 2 35 0 219 264 31 70 chr3 48551 48680 -217988478 + MIR SINE MIR 136 259 -3 25 0 0 0 chr3 48972 48997 -217988161 + AT_rich Low_complexity Low_complexity 1 25 0 325 313 223 18 chr3 49071 49237 -217987921 + MIR SINE MIR 15 214 -48 201 323 175 21 chr3 49492 49681 -217987477 + L2 LINE L2 2831 3048 -224 276 137 0 0 chr3 49821 49872 -217987286 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1786 260 46 8 chr3 51275 51860 -217985298 + L1 LINE L1 2273 2879 -3267 2463 152 7 7 chr3 51860 52294 -217984864 + L1MB1 LINE L1 5733 6166 -2 1955 131 7 0 chr3 52358 52675 -217984483 + AluSx SINE Alu 1 319 0 384 306 58 67 chr3 54606 54936 -217982222 + Charlie8 DNA MER1_type 211 537 -1880 354 294 108 37 chr3 55217 55456 -217981702 - MIR SINE MIR -3 259 6 505 222 0 0 chr3 56461 56551 -217980607 + MER45A DNA AcHobo 89 178 0 219 367 33 22 chr3 56551 56641 -217980517 + MER91A DNA MER1_type 103 193 -3 222 0 79 0 chr3 59543 59581 -217977577 + (TA)n Simple_repeat Simple_repeat 2 42 0 196 411 78 17 chr3 59709 59889 -217977269 + L2 LINE L2 2553 2743 -571 183 222 0 0 chr3 59889 59934 -217977224 + (TA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr3 60070 60092 -217977066 + AT_rich Low_complexity Low_complexity 1 22 0 321 310 159 31 chr3 60207 60433 -217976725 + MIR SINE MIR 5 259 -3 1737 168 3 7 chr3 60693 60984 -217976174 - AluJb SINE Alu -16 296 7 265 301 12 0 chr3 61805 61888 -217975270 - L1MC4 LINE L1 -1340 6702 6619 1076 233 166 14 chr3 61890 62234 -217974924 + MSTD LTR MaLR 1 396 0 6554 239 62 20 chr3 62240 63900 -217973258 + MSTD-int LTR MaLR 6 1735 0 717 194 70 47 chr3 63900 64204 -217972954 + MSTD LTR MaLR 1 311 -54 1676 145 11 0 chr3 64204 64473 -217972685 + L1PA16 LINE L1 5886 6157 -9 245 238 0 16 chr3 64500 64563 -217972595 + MSTD LTR MaLR 304 365 0 674 236 72 24 chr3 65139 65347 -217971811 - MER20 DNA MER1_type -1 218 1 297 0 0 0 chr3 66704 66737 -217970421 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 310 9 9 chr3 67994 68107 -217969051 + MLT1L LTR MaLR 503 615 0 400 182 10 10 chr3 70065 70164 -217966994 + CT-rich Low_complexity Low_complexity 2 100 0 446 181 14 199 chr3 70281 70573 -217966585 + LTR38B LTR ERV1 1 238 -372 365 219 35 84 chr3 70702 70980 -217966178 + LTR38B LTR ERV1 291 598 0 21 36 0 0 chr3 71725 71753 -217965405 + AT_rich Low_complexity Low_complexity 1 28 0 309 360 33 93 chr3 72670 73003 -217964155 + L2 LINE L2 2960 3272 0 249 250 104 0 chr3 73369 73465 -217963693 + MLT1I LTR MaLR 42 147 -262 390 42 0 0 chr3 74851 74899 -217962259 + (TG)n Simple_repeat Simple_repeat 1 48 0 1636 259 75 19 chr3 74984 75516 -217961642 + MLT1F1 LTR MaLR 3 564 -3 232 241 96 24 chr3 75529 75612 -217961546 - MIR SINE MIR -57 205 117 304 320 109 57 chr3 75658 76136 -217961022 - MLT1J LTR MaLR -6 505 3 287 324 150 19 chr3 77260 77473 -217959685 + HAL1 LINE L1 1684 1924 -583 287 240 58 58 chr3 77786 77940 -217959218 + HAL1b LINE L1 746 899 -449 274 328 44 59 chr3 78088 78223 -217958935 + L2 LINE L2 2880 3015 -298 1389 41 6 0 chr3 78223 78392 -217958766 - L1PA3 LINE L1 -1 6154 5985 274 328 44 59 chr3 78392 78597 -217958561 + L2 LINE L2 3015 3215 -98 24 0 0 0 chr3 78650 78674 -217958484 + AT_rich Low_complexity Low_complexity 1 24 0 1899 145 92 3 chr3 78703 79061 -217958097 + MLT1B LTR MaLR 1 390 0 222 37 0 0 chr3 79173 79200 -217957958 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 80098 80120 -217957038 + AT_rich Low_complexity Low_complexity 1 22 0 2484 144 64 7 chr3 80362 80798 -217956360 + LOR1b LTR ERV1 1 461 0 362 368 123 19 chr3 81004 81420 -217955738 + L2 LINE L2 2264 2722 -592 209 125 0 42 chr3 81442 81490 -217955668 + (TATG)n Simple_repeat Simple_repeat 3 48 0 229 342 26 0 chr3 82370 82446 -217954712 + L2 LINE L2 2993 3070 -202 225 341 49 0 chr3 82560 82642 -217954516 + L2 LINE L2 3227 3312 -1 364 230 34 32 chr3 82738 82846 -217954312 - MLT1H LTR MaLR 0 549 433 622 240 27 68 chr3 82938 83159 -217953999 - MLT1H LTR MaLR -243 306 95 1712 227 55 49 chr3 84422 84915 -217952243 + MLT1D LTR MaLR 5 500 -5 22 35 0 0 chr3 84972 85001 -217952157 + AT_rich Low_complexity Low_complexity 1 29 0 551 183 24 0 chr3 85051 85177 -217951981 - L1MC4 LINE L1 0 8042 7914 282 263 13 13 chr3 85336 85412 -217951746 - MER5C DNA MER1_type -248 76 1 953 112 149 0 chr3 85449 85610 -217951548 - MSTA LTR MaLR 0 428 244 424 167 42 0 chr3 85605 85677 -217951481 - MSTA LTR MaLR -353 75 1 * 232 309 85 0 chr3 85805 85899 -217951259 + L2 LINE L2 3200 3301 -12 2256 118 3 0 chr3 87916 88222 -217948936 - AluSq SINE Alu -6 307 1 513 280 60 30 chr3 88732 88964 -217948194 - MIR SINE MIR -8 254 16 180 250 0 0 chr3 89816 89852 -217947306 + MIR SINE MIR 226 261 -1 484 252 109 7 chr3 90374 90521 -217946637 + MIR SINE MIR 15 176 -86 240 296 0 37 chr3 91025 91106 -217946052 + MIR SINE MIR 180 257 -5 206 241 0 0 chr3 91132 91186 -217945972 + (TA)n Simple_repeat Simple_repeat 2 55 0 2273 77 0 10 chr3 91788 92108 -217945050 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 92347 92380 -217944778 + AT_rich Low_complexity Low_complexity 1 33 0 345 47 0 0 chr3 92521 92564 -217944594 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 92735 92765 -217944393 + AT_rich Low_complexity Low_complexity 1 30 0 17898 43 5 3 chr3 93757 95986 -217941172 - L1P LINE L1 -3386 2760 529 24 0 0 0 chr3 96158 96182 -217940976 + AT_rich Low_complexity Low_complexity 1 24 0 203 273 0 18 chr3 97925 97980 -217939178 - L2 LINE L2 -9 3263 3210 2221 92 0 32 chr3 98954 99269 -217937889 - AluSx SINE Alu -7 305 1 849 105 7 14 chr3 100196 100339 -217936819 - L1PA13 LINE L1 0 6163 6022 388 352 54 37 chr3 101406 101758 -217935400 + L2 LINE L2 2312 2669 -645 2899 236 50 4 chr3 101854 102570 -217934588 + L1MD2 LINE L1 5390 6138 -221 271 260 39 0 chr3 102590 102667 -217934491 + L1MD3 LINE L1 7786 7865 -130 435 332 143 28 chr3 104004 104306 -217932852 + L2 LINE L2 2737 3070 -243 742 254 55 15 chr3 104317 104518 -217932640 - MER63A DNA MER1_type -1 209 1 307 313 0 0 chr3 104644 104724 -217932434 + L2 LINE L2 3234 3313 0 247 229 184 23 chr3 107058 107277 -217929881 - Charlie7 DNA MER1_type 0 2612 6 180 152 0 0 chr3 107710 107743 -217929415 + (TTA)n Simple_repeat Simple_repeat 2 34 0 872 283 14 0 chr3 107803 108022 -217929136 - MER58A DNA MER1_type 0 224 3 1735 178 23 26 chr3 108101 108449 -217928709 + MER7A DNA MER2_type 1 345 -1 1255 190 107 33 chr3 108592 108929 -217928229 + MLT1A1 LTR MaLR 4 365 0 46 54 0 0 chr3 109507 109581 -217927577 + AT_rich Low_complexity Low_complexity 1 74 0 449 350 31 20 chr3 110163 110417 -217926741 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr3 110782 110832 -217926326 + AT_rich Low_complexity Low_complexity 1 50 0 359 219 109 8 chr3 111849 111977 -217925181 + MER103 DNA DNA 11 151 -15 221 376 12 0 chr3 112011 112096 -217925062 + L2 LINE L2 3224 3309 -4 428 341 18 66 chr3 112597 112823 -217924335 - MIR SINE MIR -30 232 18 1128 275 28 19 chr3 113308 113668 -217923490 - L2 LINE L2 -9 3304 2942 700 287 37 0 chr3 113769 113957 -217923201 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr3 113970 114015 -217923143 - L2 LINE L2 -514 2800 2756 652 286 123 62 chr3 114023 114537 -217922621 + MLT1H1 LTR MaLR 4 548 -19 1634 306 114 13 chr3 114545 115239 -217921919 - L2 LINE L2 -548 2766 2003 2137 150 28 11 chr3 115468 115829 -217921329 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr3 116434 116455 -217920703 + AT_rich Low_complexity Low_complexity 1 21 0 557 204 55 0 chr3 116915 117096 -217920062 - L1MCa LINE L1 -2889 3537 3347 6291 157 7 26 chr3 117102 119323 -217917835 - L1PB1 LINE L1 0 6151 3974 694 221 21 5 chr3 119298 119488 -217917670 - L1MCa LINE L1 -3092 3334 3142 * 2300 202 48 20 chr3 119502 120351 -217916807 - L1MCa LINE L1 -3495 2931 2033 465 120 100 0 chr3 120446 120546 -217916612 - L1MCa LINE L1 -4384 2042 1933 325 393 34 11 chr3 120572 120750 -217916408 + L3 LINE CR1 1331 1512 -65 232 247 82 0 chr3 122741 122826 -217914332 + L1ME4a LINE L1 5844 5935 -186 21 36 0 0 chr3 124651 124679 -217912479 + AT_rich Low_complexity Low_complexity 1 28 0 318 319 86 17 chr3 126863 127095 -217910063 - L1MC/D LINE L1 -2036 5772 5525 187 318 0 0 chr3 127118 127162 -217909996 - MIR SINE MIR -203 59 16 196 287 103 46 chr3 127286 127373 -217909785 + MIR SINE MIR 11 102 -160 2051 124 89 3 chr3 127392 127730 -217909428 - THE1C LTR MaLR -8 367 1 237 67 0 0 chr3 128218 128248 -217908910 + LTR6A LTR ERV1 73 102 -462 22 0 0 0 chr3 129147 129169 -217907989 + AT_rich Low_complexity Low_complexity 1 22 0 1800 158 51 67 chr3 129355 129746 -217907412 + MLT2D LTR ERVL 1 534 -20 257 196 0 0 chr3 129771 129822 -217907336 + MLT2C1 LTR ERVL 347 397 0 2420 54 3 0 chr3 129982 130278 -217906880 + AluY SINE Alu 1 297 -14 2911 76 76 2 chr3 130444 130866 -217906292 + MLT2A2 LTR ERVL 1 453 0 474 60 90 0 chr3 130869 131003 -217906155 + (TA)n Simple_repeat Simple_repeat 2 147 0 1201 179 35 16 chr3 131345 131602 -217905556 + L1PA7 LINE L1 5891 6152 -2 1460 245 78 21 chr3 132146 132583 -217904575 + MLT1C LTR MaLR 6 467 0 766 235 131 40 chr3 132829 133250 -217903908 + LTR37B LTR ERV1 1 459 -9 729 227 0 6 chr3 133264 133427 -217903731 - FRAM SINE Alu -23 153 1 205 97 16 81 chr3 133809 133871 -217903287 + (TTATA)n Simple_repeat Simple_repeat 1 58 0 207 69 0 0 chr3 134083 134112 -217903046 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 297 193 28 chr3 134223 134368 -217902790 - MIR SINE MIR -73 189 21 349 303 9 9 chr3 134519 134628 -217902530 + MIR3 SINE MIR 54 162 -46 1279 218 49 35 chr3 134726 135153 -217902005 - HsTC2 DNA Tc2 -11 1887 1279 351 0 0 0 chr3 136176 136215 -217900943 + (CA)n Simple_repeat Simple_repeat 2 40 0 258 32 0 0 chr3 136214 136245 -217900913 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 927 233 43 9 chr3 136288 136520 -217900638 + MIR SINE MIR 1 240 -22 929 165 19 19 chr3 136555 136767 -217900391 - L1 LINE L1 -823 5323 5112 4760 169 25 6 chr3 136772 137670 -217899488 + L1MA8 LINE L1 5364 6278 -13 273 98 0 0 chr3 137683 137724 -217899434 + (CA)n Simple_repeat Simple_repeat 2 42 0 317 226 108 0 chr3 138823 138916 -217898242 + MER103 DNA DNA 57 159 -7 272 292 124 0 chr3 139576 139689 -217897469 + MER117 DNA MER1_type 6 132 -65 278 323 46 8 chr3 139754 139881 -217897277 - MIR SINE MIR -48 160 29 2343 83 0 0 chr3 139904 140205 -217896953 + AluSc SINE Alu 3 303 -6 2397 71 0 3 chr3 140831 141141 -217896017 + AluY SINE Alu 1 309 -2 228 315 77 49 chr3 141445 141588 -217895570 - MIR3 SINE MIR -4 204 58 685 259 129 9 chr3 143029 143261 -217893897 + MIR SINE MIR 2 261 -1 639 293 122 39 chr3 145131 145466 -217891692 - MLT1I LTR MaLR -5 404 42 234 204 0 19 chr3 145568 145622 -217891536 + (CA)n Simple_repeat Simple_repeat 2 54 0 276 100 0 0 chr3 145622 145662 -217891496 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2116 249 42 41 chr3 145874 146698 -217890460 + L1MD2 LINE L1 3750 4574 -1572 893 216 0 39 chr3 146721 146953 -217890205 - AluJo SINE Alu -6 306 84 757 158 8 0 chr3 147056 147176 -217889982 - FLAM_C SINE Alu -22 121 1 331 277 52 78 chr3 147214 147445 -217889713 + L1MD2 LINE L1 4579 4803 -1343 24 85 0 0 chr3 147462 147521 -217889637 + AT_rich Low_complexity Low_complexity 1 59 0 3580 238 44 32 chr3 147526 148976 -217888182 + L1MD2 LINE L1 4793 6355 -4 * 5252 188 27 15 chr3 148973 149104 -217888054 + L1MA8 LINE L1 4195 4323 -1968 1910 132 3 56 chr3 149104 149423 -217887735 - AluSc SINE Alu -5 304 3 5252 188 27 15 chr3 149423 150165 -217886993 + L1MA8 LINE L1 4323 5055 -1236 2184 165 30 37 chr3 150165 150625 -217886533 + MSTB2 LTR MaLR 1 457 0 5252 188 27 15 chr3 150625 151820 -217885338 + L1MA8 LINE L1 5055 6291 0 22 0 0 0 chr3 152507 152529 -217884629 + AT_rich Low_complexity Low_complexity 1 22 0 200 327 0 0 chr3 153770 153825 -217883333 - MIR SINE MIR -150 112 58 366 303 53 53 chr3 154863 155051 -217882107 + L2 LINE L2 2584 2771 -543 3923 150 34 4 chr3 155323 156036 -217881122 - L1MA4 LINE L1 -6 6294 5561 322 287 60 47 chr3 156495 156645 -217880513 + L2 LINE L2 3162 3313 0 423 265 61 30 chr3 156752 156884 -217880274 - LTR16C LTR ERVL 0 491 356 1706 112 4 7 chr3 157614 157891 -217879267 - L1MA5A LINE L1 -1 6296 6021 187 296 37 19 chr3 158215 158269 -217878889 + L2 LINE L2 3134 3188 -84 354 322 22 0 chr3 159343 159433 -217877725 + MER5A DNA MER1_type 10 101 -88 525 366 50 9 chr3 159520 159837 -217877321 + MLT1J LTR MaLR 3 332 -179 25 0 0 0 chr3 161696 161721 -217875437 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 24 chr3 162200 162229 -217874929 + AT_rich Low_complexity Low_complexity 1 30 -11 1184 15 0 0 chr3 162229 162366 -217874792 - L1PA4 LINE L1 -8 6147 6011 31 0 0 24 chr3 162366 162378 -217874780 + AT_rich Low_complexity Low_complexity 30 41 0 239 325 38 12 chr3 163056 163136 -217874022 + MIR SINE MIR 34 115 -147 285 29 0 0 chr3 163174 163208 -217873950 + (GA)n Simple_repeat Simple_repeat 1 34 0 2121 305 43 46 chr3 163216 164961 -217872197 - L1M4 LINE L1 -888 5258 3520 608 241 91 37 chr3 165300 165541 -217871617 + Charlie5 DNA MER1_type 2234 2487 -125 246 301 0 0 chr3 165567 165640 -217871518 - L1M4 LINE L1 -2056 4090 4018 721 359 31 29 chr3 165654 166234 -217870924 + L1PA13 LINE L1 788 1368 -6206 471 300 52 14 chr3 166218 166492 -217870666 + L1PA13 LINE L1 2069 2303 -5271 * 4287 231 35 18 chr3 166730 167947 -217869211 + L1PA13 LINE L1 2188 3439 -4145 2076 143 0 0 chr3 167947 168248 -217868910 + AluSx SINE Alu 3 303 -9 4287 231 35 18 chr3 168248 168431 -217868727 + L1PA13 LINE L1 3439 3617 -3967 24 0 0 0 chr3 168631 168655 -217868503 + AT_rich Low_complexity Low_complexity 1 24 0 2896 252 50 14 chr3 168793 169806 -217867352 + L1PA13 LINE L1 3599 4648 -2936 * 16282 191 32 37 chr3 169799 173484 -217863674 - L1PB1 LINE L1 0 6867 3167 7107 6 0 0 chr3 173484 174278 -217862880 + L1PA2 LINE L1 5344 6138 -17 16282 191 32 37 chr3 174278 176646 -217860512 - L1PB1 LINE L1 -3700 3167 993 273 29 0 0 chr3 176646 176680 -217860478 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 16282 191 32 37 chr3 176680 177668 -217859490 - L1PB1 LINE L1 -5874 993 2 246 356 130 14 chr3 177724 177940 -217859218 + L2 LINE L2 2830 3070 -202 271 311 75 112 chr3 178536 179106 -217858052 + LTR67 LTR ERVL 4 552 -5 445 305 41 35 chr3 179353 179550 -217857608 + MIR SINE MIR 65 262 0 230 363 50 45 chr3 180382 180561 -217856597 - L2 LINE L2 -522 2792 2613 22 0 0 0 chr3 180950 180972 -217856186 + AT_rich Low_complexity Low_complexity 1 22 0 2303 123 43 6 chr3 181106 181457 -217855701 + THE1B LTR MaLR 1 364 0 1345 215 49 89 chr3 182234 182760 -217854398 + MLT1D LTR MaLR 1 505 0 2166 109 3 0 chr3 184227 184521 -217852637 - AluSx SINE Alu -17 295 1 199 298 229 0 chr3 184651 184782 -217852376 - MIR SINE MIR -53 209 49 1039 105 62 0 chr3 185506 185668 -217851490 - L1PA16 LINE L1 -16 6150 5979 371 221 171 57 chr3 185769 185909 -217851249 - MER5B DNA MER1_type -22 156 1 348 228 38 13 chr3 185979 186058 -217851100 - MER94 DNA DNA -53 81 1 319 317 14 62 chr3 186060 186205 -217850953 - MER5A DNA MER1_type -24 165 28 3897 189 40 0 chr3 186222 187003 -217850155 - L1MC1 LINE L1 0 6333 5522 229 126 5 7 chr3 237003 237194 -217799964 + AluSq SINE Alu 66 295 -4 1821 142 7 23 chr3 237478 237780 -217799378 - AluSx SINE Alu -15 297 1 1879 171 97 8 chr3 238028 238419 -217798739 + MSTB LTR MaLR 1 426 0 272 89 0 22 chr3 239529 239574 -217797584 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr3 239938 239960 -217797198 + AT_rich Low_complexity Low_complexity 1 22 0 1256 140 0 0 chr3 240036 240215 -217796943 - AluSg/x SINE Alu -2 310 132 270 294 76 11 chr3 240315 240407 -217796751 - L2 LINE L2 0 3272 3175 1799 252 21 14 chr3 240574 241006 -217796152 - MER82 DNA MER2_type -7 646 212 428 82 0 0 chr3 241007 241068 -217796090 + Alu SINE Alu 241 301 -9 900 215 19 10 chr3 241303 241512 -217795646 - MER82 DNA MER2_type -433 220 10 260 77 0 0 chr3 241572 241611 -217795547 + MADE1 DNA Mariner 42 80 0 2252 106 0 7 chr3 242932 243235 -217793923 + AluSx SINE Alu 1 301 -11 374 308 43 0 chr3 243643 243760 -217793398 - L2 LINE L2 -7 3265 3144 35 54 0 0 chr3 243760 243816 -217793342 + AT_rich Low_complexity Low_complexity 1 56 0 3630 99 25 2 chr3 243848 244364 -217792794 + MER41B LTR ERV1 1 528 -107 2011 154 0 0 chr3 244371 244669 -217792489 - AluSx SINE Alu -12 300 3 277 337 70 30 chr3 244934 245364 -217791794 + L1ME LINE L1 5370 5816 -346 243 0 0 0 chr3 246261 246288 -217790870 + (T)n Simple_repeat Simple_repeat 1 27 0 264 306 72 0 chr3 246762 246873 -217790285 - L2 LINE L2 -6 3307 3189 736 225 7 7 chr3 247088 247264 -217789894 - AluJb SINE Alu 0 310 135 1717 190 40 54 chr3 247266 247346 -217789812 - L1MB7 LINE L1 -10 6174 6094 718 217 0 0 chr3 247346 247475 -217789683 - FLAM_A SINE Alu -1 132 4 1717 190 40 54 chr3 247475 247873 -217789285 - L1MB7 LINE L1 -90 6094 5703 403 327 92 9 chr3 249062 249279 -217787879 - MIR SINE MIR -3 259 25 272 400 22 22 chr3 251882 252017 -217785141 - L2 LINE L2 -4 3268 3134 195 322 164 0 chr3 252257 252409 -217784749 - L2 LINE L2 -400 2914 2738 26474 129 9 5 chr3 253084 258342 -217778816 - L1PA7 LINE L1 -1 6468 1189 264 224 35 0 chr3 258489 258547 -217778611 - AluJ/FLAM SINE Alu -242 60 1 1198 130 0 0 chr3 258707 258884 -217778274 + AluSg/x SINE Alu 131 307 -3 216 381 41 41 chr3 260662 260809 -217776349 - L2 LINE L2 -9 3263 3117 393 222 11 11 chr3 260966 261056 -217776102 - MLT1H LTR MaLR -387 162 73 330 247 31 31 chr3 261105 261202 -217775956 + MER5B DNA MER1_type 82 178 0 737 261 6 6 chr3 261209 261389 -217775769 - MER5A DNA MER1_type 0 189 10 259 273 16 62 chr3 261889 262017 -217775141 + LTR33 LTR ERVL 1 122 -399 722 164 0 210 chr3 262026 262108 -217775050 + MER5A DNA MER1_type 2 3 -186 897 143 0 8 chr3 262108 262241 -217774917 + FLAM_C SINE Alu 2 133 0 722 164 0 210 chr3 262241 262396 -217774762 + MER5A DNA MER1_type 3 189 0 686 307 77 25 chr3 262401 262766 -217774392 + LTR33 LTR ERVL 128 511 -10 201 94 0 0 chr3 263353 263385 -217773773 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 1723 155 14 47 chr3 263404 263700 -217773458 - AluJb SINE Alu -26 286 1 1496 207 18 3 chr3 263945 264230 -217772928 + AluJb SINE Alu 2 290 -22 568 187 90 15 chr3 264587 264721 -217772437 - L1MB2 LINE L1 -3 6168 6025 339 255 98 0 chr3 265523 265625 -217771533 + MIR SINE MIR 15 126 -136 234 329 40 79 chr3 266302 266530 -217770628 + L2 LINE L2 3006 3224 -48 374 353 68 10 chr3 267239 267446 -217769712 - MIR SINE MIR -19 243 25 212 317 20 20 chr3 268086 268187 -217768971 - MER5B DNA MER1_type 0 178 78 1621 274 48 25 chr3 268224 268778 -217768380 - MLT1F1 LTR MaLR 0 567 1 280 271 51 25 chr3 269754 269872 -217767286 - Charlie8 DNA MER1_type -1929 488 368 239 111 0 22 chr3 270003 270048 -217767110 + (TTCTCC)n Simple_repeat Simple_repeat 4 47 0 1704 173 4 4 chr3 270052 270329 -217766829 - AluJo SINE Alu -34 278 2 232 353 105 15 chr3 270665 270798 -217766360 + L2 LINE L2 3128 3272 0 1005 280 53 51 chr3 270955 271730 -217765428 - L2 LINE L2 0 3313 2542 435 363 97 0 chr3 271915 272193 -217764965 + L2 LINE L2 2658 2962 -352 259 352 11 11 chr3 272446 272534 -217764624 + L2 LINE L2 3190 3277 -36 366 74 0 0 chr3 272539 272593 -217764565 + (TGGA)n Simple_repeat Simple_repeat 1 54 0 1928 160 0 16 chr3 274205 274512 -217762646 - AluSx SINE Alu -10 302 1 257 262 0 0 chr3 274627 274689 -217762469 + (CA)n Simple_repeat Simple_repeat 1 62 0 2171 162 7 55 chr3 275305 275597 -217761561 - Tigger2a DNA MER2_type -2274 434 170 1886 147 0 42 chr3 275597 275910 -217761248 - AluSx SINE Alu -12 300 1 2171 162 7 55 chr3 275910 276073 -217761085 - Tigger2a DNA MER2_type -2538 170 1 390 347 17 6 chr3 276925 277101 -217760057 + MIR SINE MIR 2 179 -83 285 260 90 0 chr3 277689 277789 -217759369 + MIR SINE MIR 128 236 -26 39 0 0 0 chr3 277954 277993 -217759165 + AT_rich Low_complexity Low_complexity 1 39 0 283 271 59 42 chr3 278038 278156 -217759002 + MLT1K LTR MaLR 456 575 -13 1418 99 0 0 chr3 278309 278501 -217758657 - AluY SINE Alu -14 297 106 669 25 0 0 chr3 278501 278580 -217758578 + (TTTC)n Simple_repeat Simple_repeat 2 80 0 2095 110 7 0 chr3 278580 278862 -217758296 - AluSq SINE Alu -29 284 1 470 234 11 4 chr3 279858 280135 -217757023 + (TA)n Simple_repeat Simple_repeat 1 279 0 1065 180 11 21 chr3 282870 283059 -217754099 + MER2 DNA MER2_type 1 187 -158 2424 76 0 0 chr3 283059 283360 -217753798 + AluSc SINE Alu 1 301 -8 333 269 26 0 chr3 283375 283453 -217753705 + MER2 DNA MER2_type 266 345 0 482 288 43 6 chr3 283786 283949 -217753209 + MIR SINE MIR 79 247 -15 1752 182 18 3 chr3 284185 284525 -217752633 - MER7A DNA MER2_type 0 346 4 2149 155 13 28 chr3 284905 285299 -217751859 + MLT1B LTR MaLR 1 388 -2 706 253 75 11 chr3 285694 285880 -217751278 - MLT1J2 LTR MaLR -214 236 39 930 243 13 26 chr3 286086 286312 -217750846 - MER58A DNA MER1_type 0 224 2 1972 82 0 70 chr3 286426 286697 -217750461 + L1PA10 LINE L1 5864 6113 -55 1710 141 21 35 chr3 286697 287000 -217750158 + AluSg SINE Alu 1 299 0 1972 82 0 70 chr3 287000 287043 -217750115 + L1PA10 LINE L1 6113 6157 -11 210 37 0 0 chr3 287116 287143 -217750015 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 306 300 40 72 chr3 287509 287759 -217749399 + MIR SINE MIR 21 262 0 236 320 119 21 chr3 287882 288076 -217749082 + L2 LINE L2 1966 2178 -1136 188 200 89 0 chr3 288480 288525 -217748633 - L2 LINE L2 0 3313 3265 529 338 39 13 chr3 288624 288855 -217748303 + MIR SINE MIR 25 261 -1 2231 85 10 7 chr3 289161 289466 -217747692 - AluY SINE Alu -5 306 1 21 36 0 0 chr3 292118 292146 -217745012 + AT_rich Low_complexity Low_complexity 1 28 0 1905 288 69 34 chr3 293231 293511 -217743647 - L1ME LINE L1 -4383 1697 1428 2445 51 0 0 chr3 293511 293804 -217743354 + AluY SINE Alu 2 294 -17 1905 288 69 34 chr3 293804 294737 -217742421 - L1ME LINE L1 -4652 1428 399 1829 207 14 8 chr3 294737 295100 -217742058 - MLT1A1 LTR MaLR 0 365 1 1905 288 69 34 chr3 295100 295447 -217741711 - L1ME LINE L1 -5681 399 66 1909 157 0 0 chr3 295447 295753 -217741405 - AluSx SINE Alu 0 308 3 270 190 0 38 chr3 295902 295981 -217741177 - MER116 DNA Mariner 0 80 5 3770 143 17 6 chr3 296505 297140 -217740018 - L1PA16 LINE L1 -9 6157 5516 386 335 37 31 chr3 297900 298091 -217739067 - MER117 DNA MER1_type 0 197 6 528 350 133 16 chr3 298320 298703 -217738455 - MLT1K LTR MaLR -151 437 10 354 321 108 71 chr3 298870 299150 -217738008 - MLT1J LTR MaLR -120 326 33 1625 127 19 16 chr3 299150 299457 -217737701 + AluY SINE Alu 1 308 -3 354 321 108 71 chr3 299457 299472 -217737686 - MLT1J LTR MaLR -413 33 20 21 0 0 0 chr3 299702 299723 -217737435 + AT_rich Low_complexity Low_complexity 1 21 0 261 330 113 19 chr3 299799 299905 -217737253 + MIR3 SINE MIR 66 181 -27 29 0 0 0 chr3 300555 300584 -217736574 + AT_rich Low_complexity Low_complexity 1 29 0 363 121 0 0 chr3 301438 301496 -217735662 + (TTCC)n Simple_repeat Simple_repeat 1 58 0 307 284 23 11 chr3 301773 301861 -217735297 + L2 LINE L2 3223 3311 -2 426 273 52 32 chr3 305019 305173 -217731985 + MIR SINE MIR 49 205 -57 27 49 0 0 chr3 306143 306184 -217730974 + AT_rich Low_complexity Low_complexity 1 41 0 270 116 0 0 chr3 308044 308087 -217729071 + (TG)n Simple_repeat Simple_repeat 1 43 0 441 297 24 53 chr3 308577 308786 -217728372 + MIR SINE MIR 12 214 -48 442 257 88 70 chr3 309014 309185 -217727973 + MER5B DNA MER1_type 2 175 -3 194 266 13 76 chr3 309435 309514 -217727644 - MIR SINE MIR -112 150 77 358 275 70 0 chr3 309788 309930 -217727228 + Charlie8 DNA MER1_type 38 189 -2228 547 281 119 0 chr3 310051 310286 -217726872 - LTR33 LTR ERVL -37 484 222 290 270 22 11 chr3 310342 310431 -217726727 - LTR33 LTR ERVL -405 116 27 195 294 73 46 chr3 311413 311522 -217725636 - MIR SINE MIR -56 206 95 1755 184 0 34 chr3 311647 311968 -217725190 - AluJo SINE Alu -2 310 1 255 173 0 0 chr3 312182 312234 -217724924 + (TG)n Simple_repeat Simple_repeat 1 52 0 349 270 67 79 chr3 312378 312554 -217724604 - MIR SINE MIR -77 185 12 2218 94 14 0 chr3 312741 313027 -217724131 + AluSx SINE Alu 2 291 -21 1086 137 29 78 chr3 313037 313241 -217723917 + AluJo SINE Alu 36 229 -83 296 252 19 37 chr3 314667 314774 -217722384 + MIR SINE MIR 112 216 -46 27 0 0 0 chr3 315976 316003 -217721155 + AT_rich Low_complexity Low_complexity 1 27 0 1524 84 14 0 chr3 316120 316333 -217720825 - L1PA5 LINE L1 0 6154 5939 877 248 40 43 chr3 316783 317130 -217720028 - MLT1H1 LTR MaLR -2 553 208 689 299 51 0 chr3 319427 319781 -217717377 + MER113 DNA MER1_type? 31 402 -119 243 0 0 0 chr3 321512 321539 -217715619 + (CA)n Simple_repeat Simple_repeat 1 27 0 2878 153 70 23 chr3 321618 322233 -217714925 + L1MA6 LINE L1 5652 6295 -5 350 303 212 32 chr3 323874 324376 -217712782 - L2 LINE L2 0 3313 2703 248 246 40 48 chr3 325317 325347 -217711811 + L1M3 LINE L1 5318 5347 -824 4670 97 17 38 chr3 325347 325420 -217711738 + L1PA13 LINE L1 5419 5492 -671 2266 71 7 23 chr3 325420 325728 -217711430 + AluY SINE Alu 1 303 -8 4670 97 17 38 chr3 325728 326415 -217710743 + L1PA13 LINE L1 5492 6163 0 248 246 40 48 chr3 326415 326510 -217710648 + L1M3 LINE L1 5347 5442 -729 900 235 145 9 chr3 326519 326851 -217710307 + L1ME1 LINE L1 5782 6158 -8 958 154 11 69 chr3 326877 326966 -217710192 + FAM SINE Alu 1 77 -244 1111 94 5 80 chr3 326966 327167 -217709991 + MER30B DNA MER1_type 1 186 -4 958 154 11 69 chr3 327167 327252 -217709906 + FAM SINE Alu 77 165 -20 344 344 50 17 chr3 327257 327437 -217709721 + L1ME LINE L1 5431 5616 -505 2401 128 25 32 chr3 327438 327869 -217709289 + MER4E LTR ERV1 344 771 -8 826 206 110 10 chr3 328667 328876 -217708282 - MLT1D LTR MaLR 0 505 276 1001 227 108 31 chr3 328876 329314 -217707844 - LTR29 LTR ERV1 0 609 160 258 284 69 9 chr3 329316 329432 -217707726 - MER34 LTR ERV1 -409 133 11 792 233 26 48 chr3 329445 329715 -217707443 - MLT1D LTR MaLR -229 276 13 208 250 29 15 chr3 330014 330082 -217707076 + MIR SINE MIR 130 198 -64 2168 174 40 124 chr3 330157 330897 -217706261 - LTR8A LTR ERV1 0 727 51 2022 183 53 12 chr3 330897 331308 -217705850 + MSTA LTR MaLR 1 428 0 2168 174 40 124 chr3 331308 331325 -217705833 - LTR8A LTR ERV1 -676 51 34 1961 135 7 0 chr3 331408 331696 -217705462 + AluSx SINE Alu 1 290 -22 280 322 34 34 chr3 331750 331899 -217705259 - L2 LINE L2 -1 3312 3164 2361 110 0 0 chr3 332282 332582 -217704576 + AluSx SINE Alu 1 300 -12 286 170 0 0 chr3 332600 332653 -217704505 + L1M4 LINE L1 2315 2367 -3779 703 270 47 9 chr3 332937 333148 -217704010 - MER20 DNA MER1_type 0 219 1 400 77 31 0 chr3 333198 333263 -217703895 + (TG)n Simple_repeat Simple_repeat 2 68 0 189 0 0 0 chr3 334848 334869 -217702289 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 800 243 66 22 chr3 336999 337225 -217699933 - MIR SINE MIR -5 257 22 2351 94 0 0 chr3 337225 337534 -217699624 - AluY SINE Alu -2 309 1 184 267 0 67 chr3 337923 337968 -217699190 - L2 LINE L2 -67 3205 3164 33 56 0 0 chr3 338017 338071 -217699087 + AT_rich Low_complexity Low_complexity 1 54 0 217 250 33 0 chr3 338183 338243 -217698915 + MIR SINE MIR 174 235 -27 21 0 0 0 chr3 338280 338301 -217698857 + AT_rich Low_complexity Low_complexity 1 21 0 290 297 68 27 chr3 338909 339057 -217698101 + MIR SINE MIR 36 189 -73 182 338 70 0 chr3 339062 339133 -217698025 - L2 LINE L2 -35 3237 3162 339 325 88 53 chr3 340039 340322 -217696836 - L2 LINE L2 -399 2915 2623 518 304 196 22 chr3 340982 341344 -217695814 + L2 LINE L2 2887 3311 -2 1067 124 0 0 chr3 342696 342841 -217694317 - FRAM SINE Alu -23 153 9 262 288 25 0 chr3 342856 342947 -217694211 - MIR SINE MIR -61 147 84 727 227 169 68 chr3 343049 343552 -217693606 + MLT1H1 LTR MaLR 2 555 0 1940 144 3 3 chr3 344316 344600 -217692558 + AluSq SINE Alu 1 284 -29 362 21 21 0 chr3 345562 345609 -217691549 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 1934 146 0 4 chr3 345609 345890 -217691268 - AluSx SINE Alu -32 280 1 657 294 89 5 chr3 348780 348994 -217688164 - MIR SINE MIR -17 245 14 185 255 0 43 chr3 349033 349080 -217688078 + L2 LINE L2 3217 3261 -11 414 330 40 30 chr3 351258 351558 -217685600 + MER102b DNA MER1_type 39 341 0 243 364 54 27 chr3 352492 352676 -217684482 - MIR3 SINE MIR -1 207 19 229 216 14 14 chr3 352761 352835 -217684323 + CT-rich Low_complexity Low_complexity 2 75 0 1988 135 4 0 chr3 353857 354158 -217683000 - AluSx SINE Alu 0 302 1 282 353 83 0 chr3 354226 354359 -217682799 - MER5A DNA MER1_type 0 189 46 358 255 167 36 chr3 354410 354602 -217682556 - L2 LINE L2 -69 3244 3028 422 177 0 10 chr3 354803 354899 -217682259 + (CA)n Simple_repeat Simple_repeat 1 95 0 1607 178 52 0 chr3 354921 355207 -217681951 + AluJb SINE Alu 1 301 -11 946 329 36 17 chr3 355288 355699 -217681459 + L3 LINE CR1 946 1364 -213 376 283 155 50 chr3 356268 356490 -217680668 + MER113 DNA MER1_type? 38 235 -286 2223 113 7 0 chr3 356490 356799 -217680359 + AluSx SINE Alu 1 311 -1 376 283 155 50 chr3 356799 357014 -217680144 + MER113 DNA MER1_type? 235 521 0 211 363 39 0 chr3 357307 357409 -217679749 - L2 LINE L2 0 3272 3167 826 230 52 28 chr3 357466 357679 -217679479 - MER20 DNA MER1_type 0 219 2 1160 196 57 75 chr3 359195 359567 -217677591 + MLT1A1 LTR MaLR 1 365 0 188 258 61 15 chr3 359568 359634 -217677524 + L2 LINE L2 2790 2858 -456 636 255 99 28 chr3 359889 360101 -217677057 - LTR16A LTR ERVL -208 242 16 231 286 254 8 chr3 360111 360237 -217676921 + MIR SINE MIR 96 252 -10 371 284 76 56 chr3 360333 360530 -217676628 - L2 LINE L2 0 3313 3113 392 297 77 32 chr3 361000 361155 -217676003 - MIR SINE MIR -89 173 12 360 0 0 0 chr3 361740 361780 -217675378 + (TA)n Simple_repeat Simple_repeat 2 41 0 524 248 16 23 chr3 362514 362643 -217674515 - MIR3 SINE MIR -7 201 74 298 364 43 7 chr3 362690 362830 -217674328 - MIR SINE MIR -96 166 22 369 309 119 66 chr3 362997 363240 -217673918 + L2 LINE L2 3014 3269 -3 1110 248 22 101 chr3 363415 363898 -217673260 + MER34 LTR ERV1 1 432 -110 1751 159 11 0 chr3 363898 364168 -217672990 + AluJo SINE Alu 21 293 -19 1110 248 22 101 chr3 364168 364268 -217672890 + MER34 LTR ERV1 432 538 -4 783 172 30 24 chr3 365515 365684 -217671474 + L1MA10 LINE L1 6163 6332 -2 195 360 67 20 chr3 368690 368840 -217668318 - MIR SINE MIR -27 235 79 204 97 0 0 chr3 371444 371475 -217665683 + (TG)n Simple_repeat Simple_repeat 2 32 0 2304 71 0 0 chr3 371512 371828 -217665330 - AluY SINE Alu 0 316 1 195 129 0 0 chr3 371936 371967 -217665191 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 6036 140 14 5 chr3 373139 374524 -217662634 + L1PB1 LINE L1 4745 6143 -8 35 0 0 0 chr3 374524 374559 -217662599 + AT_rich Low_complexity Low_complexity 1 35 0 301 338 79 12 chr3 374710 374931 -217662227 + MIR SINE MIR 6 242 -20 2190 107 9 25 chr3 375184 375502 -217661656 - AluSq SINE Alu 0 313 1 304 393 61 9 chr3 376344 376573 -217660585 - MIR SINE MIR -8 254 14 1855 135 63 44 chr3 376697 377061 -217660097 - THE1C LTR MaLR -4 371 1 221 333 48 67 chr3 377110 377275 -217659883 + MIR3 SINE MIR 38 199 -9 207 183 100 17 chr3 377809 377869 -217659289 + L2 LINE L2 3208 3272 0 322 156 104 0 chr3 377871 377948 -217659210 + MIR SINE MIR 64 148 -114 602 198 39 82 chr3 378662 378844 -217658314 - MIR SINE MIR -11 251 78 1234 0 7 0 chr3 378989 379128 -217658030 + L1PA2 LINE L1 6003 6142 -13 213 39 0 0 chr3 379132 379158 -217658000 + (TAA)n Simple_repeat Simple_repeat 2 27 0 189 200 67 50 chr3 379302 379362 -217657796 - L2 LINE L2 -1 3312 3252 327 191 0 0 chr3 379900 379968 -217657190 + (CATA)n Simple_repeat Simple_repeat 2 69 0 533 261 72 26 chr3 380265 380571 -217656587 + L1ME4a LINE L1 5691 6010 -111 2275 120 3 0 chr3 382267 382576 -217654582 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr3 382888 382910 -217654248 + AT_rich Low_complexity Low_complexity 1 22 0 184 370 19 37 chr3 383477 383585 -217653573 - MIR SINE MIR -123 139 34 225 0 0 0 chr3 385640 385665 -217651493 + (TG)n Simple_repeat Simple_repeat 2 26 0 234 206 0 0 chr3 386126 386189 -217650969 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 215 204 0 0 chr3 387102 387146 -217650012 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 320 33 40 chr3 387407 387557 -217649601 + L2 LINE L2 3164 3312 -1 1737 174 7 0 chr3 387611 387899 -217649259 - AluSx SINE Alu -22 290 1 823 132 0 76 chr3 387902 388046 -217649112 - AluSq/x SINE Alu -180 133 1 214 132 38 0 chr3 388088 388141 -217649017 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr3 388141 388165 -217648993 + AT_rich Low_complexity Low_complexity 1 24 0 2058 105 10 27 chr3 388165 388460 -217648698 - AluSx SINE Alu -22 290 1 234 206 0 0 chr3 389668 389731 -217647427 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 390192 390217 -217646941 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 392272 392380 -217644778 + MIR SINE MIR 34 139 -123 22 0 0 0 chr3 392947 392969 -217644189 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 393281 393590 -217643568 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 395287 395593 -217641565 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 395890 395958 -217641200 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 396496 396556 -217640602 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 396700 396726 -217640432 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 396730 396869 -217640289 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 397014 397196 -217639962 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 397910 397987 -217639171 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 397989 398049 -217639109 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 398583 398748 -217638410 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 398797 399161 -217637997 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 399285 399514 -217637644 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 400356 400674 -217636484 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 400927 401148 -217636010 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 401299 401334 -217635824 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 401334 402719 -217634439 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 403889 403920 -217633238 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 404028 404344 -217632814 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 404381 404412 -217632746 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 407016 407166 -217629992 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 410172 410341 -217626817 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 411588 411688 -217625470 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 411688 411958 -217625200 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 411958 412441 -217624717 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 412616 412859 -217624299 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 413026 413166 -217623992 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 413213 413342 -217623816 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 414075 414115 -217623043 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 414700 414855 -217622303 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 415325 415522 -217621636 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 415618 415744 -217621414 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 415754 415966 -217621192 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 416221 416287 -217620871 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 416288 416660 -217620498 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 418176 418389 -217618769 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 418446 418548 -217618610 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 418841 419056 -217618102 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 419056 419365 -217617793 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 419365 419587 -217617571 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 420156 420567 -217616591 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 420648 420934 -217616224 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 420956 421052 -217616106 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 421253 421444 -217615714 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 421495 421628 -217615530 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 421696 421997 -217615161 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 423019 423093 -217614065 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 423178 423362 -217613796 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 424161 424461 -217612697 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 426640 426687 -217610471 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 426726 426940 -217610218 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 429830 430111 -217607047 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 430111 430158 -217607000 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 431120 431404 -217605754 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 432168 432671 -217604487 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 432773 432864 -217604294 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 432879 433024 -217604134 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 434376 434738 -217602420 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 435398 435681 -217601477 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 436663 436811 -217600347 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 437419 437440 -217599718 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 437477 437537 -217599621 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 437649 437703 -217599455 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 437752 437797 -217599361 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 438186 438495 -217598663 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 438495 438721 -217598437 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 440851 440872 -217596286 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 442457 442522 -217594636 + (CA)n Simple_repeat Simple_repeat 2 68 0 771 270 47 9 chr3 442572 442783 -217594375 + MER20 DNA MER1_type 1 219 0 931 282 78 54 chr3 443063 443138 -217594020 - L1MEc LINE L1 -3921 2475 2403 2318 113 0 0 chr3 443138 443438 -217593720 - AluSx SINE Alu -12 300 1 931 282 78 54 chr3 443438 444267 -217592891 - L1MEc LINE L1 -3993 2403 1549 527 221 29 0 chr3 444267 444371 -217592787 - U6 snRNA snRNA 0 107 1 201 147 0 0 chr3 445080 445114 -217592044 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 525 229 52 81 chr3 445228 445438 -217591720 - MER20 DNA MER1_type -15 204 1 510 287 145 18 chr3 445591 445873 -217591285 - L2 LINE L2 0 3313 2996 505 278 126 36 chr3 447094 447317 -217589841 + MIR SINE MIR 7 249 -13 4283 105 21 10 chr3 447790 447907 -217589251 - MER41B LTR ERV1 0 635 521 2374 102 0 6 chr3 447907 448220 -217588938 + AluSx SINE Alu 1 311 -1 4283 105 21 10 chr3 448220 448730 -217588428 - MER41B LTR ERV1 -114 521 1 35 54 0 0 chr3 448762 448818 -217588340 + AT_rich Low_complexity Low_complexity 1 56 0 374 308 43 0 chr3 448818 448935 -217588223 + L2 LINE L2 3144 3265 -7 2252 106 0 7 chr3 449343 449646 -217587512 - AluSx SINE Alu -11 301 1 260 77 0 0 chr3 450967 451006 -217586152 - MADE1 DNA Mariner 0 80 42 1019 191 19 10 chr3 451066 451275 -217585883 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 451510 451571 -217585587 - Alu SINE Alu -9 302 242 1825 254 21 14 chr3 451572 452009 -217585149 + MER82 DNA MER2_type 212 651 -2 268 294 76 11 chr3 452171 452263 -217584895 + L2 LINE L2 3175 3272 0 1243 140 0 0 chr3 452363 452542 -217584616 + AluSg/x SINE Alu 130 308 -2 22 0 0 0 chr3 452618 452640 -217584518 + AT_rich Low_complexity Low_complexity 1 22 0 272 89 0 22 chr3 453004 453049 -217584109 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1841 171 97 8 chr3 454159 454550 -217582608 - MSTB LTR MaLR 0 426 1 1789 142 7 23 chr3 454798 455100 -217582058 + AluSx SINE Alu 1 297 -15 230 54 0 0 chr3 455384 455421 -217581737 - AluSq SINE Alu -4 295 259 1058 154 6 6 chr3 455422 455591 -217581567 - AluSq SINE Alu -95 218 50 1770 168 0 3 chr3 455615 455906 -217581252 + AluJb SINE Alu 1 290 -22 341 154 0 0 chr3 456459 456511 -217580647 - L2 LINE L2 -1 3312 3261 194 152 0 22 chr3 456625 456671 -217580487 + CT-rich Low_complexity Low_complexity 2 46 0 227 337 131 58 chr3 457866 458264 -217578894 - MLT1K LTR MaLR -22 566 140 975 196 0 0 chr3 458656 458829 -217578329 + AluJb SINE Alu 135 307 -5 220 295 209 8 chr3 460629 460758 -217576400 - L2 LINE L2 -4 3309 3155 271 400 22 22 chr3 462134 462269 -217574889 - L2 LINE L2 -4 3268 3134 192 322 164 0 chr3 462509 462661 -217574497 - L2 LINE L2 -400 2914 2738 16224 94 11 7 chr3 463330 466493 -217570665 - L1PA7 LINE L1 -1 6153 2978 220 189 44 22 chr3 467217 467307 -217569851 + (TA)n Simple_repeat Simple_repeat 2 93 0 24 67 0 0 chr3 467421 467466 -217569692 + AT_rich Low_complexity Low_complexity 1 45 0 283 210 65 0 chr3 470102 470240 -217566918 + (TA)n Simple_repeat Simple_repeat 2 148 0 1235 216 61 22 chr3 470946 471393 -217565765 - AluJo SINE Alu 0 458 1 871 206 79 14 chr3 471741 471955 -217565203 + AluJo SINE Alu 1 228 -84 3789 175 36 1 chr3 472155 472894 -217564264 - L1MC1 LINE L1 -9 6324 5560 482 261 36 12 chr3 473014 473179 -217563979 - MER20B DNA MER1_type -604 179 11 397 199 0 3 chr3 473304 473403 -217563755 + L1ME3 LINE L1 6066 6163 -1 213 39 0 0 chr3 475876 475902 -217561256 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 453 36 0 0 chr3 475901 475956 -217561202 + (TA)n Simple_repeat Simple_repeat 1 55 0 877 261 123 64 chr3 476012 476525 -217560633 - MLT1H LTR MaLR -6 543 1 192 277 213 19 chr3 476775 476930 -217560228 - MIR SINE MIR -65 197 13 3191 130 74 42 chr3 477341 477934 -217559224 - LTR9 LTR ERV1 0 612 1 386 103 176 0 chr3 477959 478027 -217559131 + MADE1 DNA Mariner 1 80 0 976 110 65 0 chr3 478220 478375 -217558783 + L1MA3 LINE L1 6141 6305 0 1215 148 10 5 chr3 480536 480738 -217556420 + L1PA16 LINE L1 5784 5986 -180 1146 171 9 14 chr3 480763 480979 -217556179 + L1PA16 LINE L1 5951 6165 -1 186 43 0 0 chr3 481177 481200 -217555958 + (A)n Simple_repeat Simple_repeat 1 23 0 930 231 0 0 chr3 482127 482300 -217554858 + FAM SINE Alu 1 173 -2 253 347 13 13 chr3 482597 482747 -217554411 + MER113 DNA MER1_type? 336 485 -36 193 347 137 0 chr3 482765 482860 -217554298 - L3 LINE CR1 -23 1554 1447 22 56 0 0 chr3 483883 483919 -217553239 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 7 7 chr3 483965 484110 -217553048 + Charlie1a DNA MER1_type 9 153 -1302 1262 160 106 13 chr3 484112 484216 -217552942 + AluJo SINE Alu 1 94 -218 356 55 18 0 chr3 484216 484271 -217552887 + (TA)n Simple_repeat Simple_repeat 1 56 0 1262 160 106 13 chr3 484271 484403 -217552755 + AluJo SINE Alu 94 259 -53 2659 222 113 35 chr3 484403 485319 -217551839 + Charlie1a DNA MER1_type 191 1178 -277 760 188 0 14 chr3 485320 485464 -217551694 + FRAM SINE Alu 20 161 -15 794 197 89 37 chr3 485467 485736 -217551422 + Charlie1a DNA MER1_type 1168 1450 -5 241 250 83 0 chr3 485739 485811 -217551347 - MIR3 SINE MIR -46 162 85 279 0 0 0 chr3 486189 486220 -217550938 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 447 218 0 0 chr3 486224 486311 -217550847 - AluJ SINE Alu -26 286 200 762 196 0 14 chr3 486318 486461 -217550697 - AluJ SINE Alu -171 141 1 30 0 0 0 chr3 487221 487251 -217549907 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 488146 488174 -217548984 + AT_rich Low_complexity Low_complexity 1 28 0 323 310 115 19 chr3 488950 489263 -217547895 + L1ME4a LINE L1 5514 5856 -265 36 0 0 0 chr3 489473 489509 -217547649 + AT_rich Low_complexity Low_complexity 1 36 0 219 320 80 40 chr3 490070 490195 -217546963 + MIR SINE MIR 59 188 -74 450 254 0 51 chr3 490409 490527 -217546631 - MLT1I LTR MaLR -213 196 85 278 258 0 0 chr3 491132 491198 -217545960 + GA-rich Low_complexity Low_complexity 3 68 0 297 331 7 0 chr3 491259 491404 -217545754 + L1ME LINE L1 2217 2362 -3784 442 290 59 5 chr3 491450 491671 -217545487 + L1ME LINE L1 2473 2705 -3441 718 230 33 53 chr3 491715 492076 -217545082 + L1ME LINE L1 2795 3148 -2998 350 290 82 51 chr3 492075 492489 -217544669 + L1ME LINE L1 4419 4845 -1301 * 186 103 0 0 chr3 492524 492553 -217544605 + (TC)n Simple_repeat Simple_repeat 2 30 0 232 315 22 0 chr3 492573 492665 -217544493 + L1ME LINE L1 4918 5011 -1135 1512 174 0 78 chr3 492746 492780 -217544378 - AluJo SINE Alu -2 310 275 279 0 0 0 chr3 492780 492811 -217544347 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1512 174 0 78 chr3 492811 493110 -217544048 - AluJo SINE Alu -37 275 3 309 337 70 30 chr3 493375 493805 -217543353 + L1ME LINE L1 5370 5816 -346 23 0 0 0 chr3 494693 494716 -217542442 + AT_rich Low_complexity Low_complexity 1 23 0 265 306 72 0 chr3 495190 495301 -217541857 - L2 LINE L2 -6 3307 3189 198 0 0 0 chr3 495516 495538 -217541620 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 929 184 0 0 chr3 495541 495693 -217541465 - AluJb SINE Alu -26 286 135 1780 190 40 52 chr3 495695 495774 -217541384 - L1MB7 LINE L1 -10 6174 6096 710 217 0 0 chr3 495774 495903 -217541255 - FLAM_A SINE Alu -1 132 4 1780 190 40 52 chr3 495903 496301 -217540857 - L1MB7 LINE L1 -88 6096 5703 443 324 97 8 chr3 497495 497733 -217539425 - MIR SINE MIR -3 259 1 2135 49 0 28 chr3 498751 498950 -217538208 - AluY SINE Alu -2 309 119 5149 52 12 12 chr3 498950 499617 -217537541 - L1PA5 LINE L1 -13 6141 5475 2135 49 0 28 chr3 499617 499701 -217537457 - AluY SINE Alu -192 119 34 30 27 0 0 chr3 499892 499929 -217537229 + AT_rich Low_complexity Low_complexity 1 37 0 23 78 0 0 chr3 504779 504830 -217532328 + AT_rich Low_complexity Low_complexity 1 51 0 349 333 23 0 chr3 504959 505088 -217532070 + MER103 DNA DNA 24 155 -11 27 0 0 0 chr3 505909 505936 -217531222 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr3 506037 506061 -217531097 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr3 506368 506403 -217530755 + AT_rich Low_complexity Low_complexity 1 35 0 724 203 0 0 chr3 506434 506557 -217530601 + FRAM SINE Alu 22 144 -32 208 51 26 26 chr3 506557 506596 -217530562 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 1905 146 0 0 chr3 507012 507353 -217529805 - AluY SINE Alu 0 341 1 208 305 84 11 chr3 509779 509874 -217527284 + MIR SINE MIR 63 164 -98 21 57 0 0 chr3 510890 510925 -217526233 + AT_rich Low_complexity Low_complexity 1 35 0 189 350 41 16 chr3 511509 511632 -217525526 + MIR3 SINE MIR 75 200 -8 246 330 30 20 chr3 514589 514689 -217522469 + MIR3 SINE MIR 81 181 -27 27 29 0 0 chr3 515755 515789 -217521369 + AT_rich Low_complexity Low_complexity 1 34 0 252 59 0 0 chr3 515997 516031 -217521127 + (CA)n Simple_repeat Simple_repeat 2 35 0 29 47 0 0 chr3 516558 516601 -217520557 + AT_rich Low_complexity Low_complexity 1 43 0 226 328 0 0 chr3 516711 516778 -217520380 + Zaphod DNA AcHobo 1 67 -3964 509 286 128 17 chr3 516909 517199 -217519959 + MER115 DNA AcHobo 370 691 -2 230 352 28 0 chr3 517212 517320 -217519838 + MIR SINE MIR 40 150 -112 766 231 55 39 chr3 517382 517637 -217519521 + MIR SINE MIR 4 262 0 200 231 58 0 chr3 517913 517965 -217519193 - MIR SINE MIR -77 185 131 * 636 277 190 34 chr3 517963 518656 -217518502 - L2 LINE L2 0 3313 2498 212 351 72 9 chr3 518647 518758 -217518400 - MIR SINE MIR -68 140 23 * 321 309 123 25 chr3 518974 519136 -217518022 - MIR SINE MIR -54 208 31 1733 206 65 54 chr3 519617 520113 -217517045 - MLT1D LTR MaLR 0 505 5 286 331 32 16 chr3 520161 520285 -217516873 - L2 LINE L2 -6 3266 3141 379 115 57 8 chr3 520524 520646 -217516512 + (TA)n Simple_repeat Simple_repeat 1 128 0 225 359 58 6 chr3 520705 520861 -217516297 + MIR SINE MIR 99 262 0 1954 146 19 10 chr3 520864 521173 -217515985 - AluSx SINE Alu 0 312 1 4242 20 0 2 chr3 522161 522657 -217514501 - L1PA2 LINE L1 -1 6154 5660 3730 18 0 0 chr3 522657 523099 -217514059 + L1P LINE L1 4857 5298 -848 831 186 6 27 chr3 523974 524157 -217513001 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 525690 525756 -217511402 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 526263 526511 -217510647 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 526944 527059 -217510099 - L2 LINE L2 -8 3305 3190 2212 121 0 0 chr3 527759 528056 -217509102 + AluSx SINE Alu 1 297 -15 527 298 13 77 chr3 528923 529158 -217508000 + MIR SINE MIR 15 234 -28 1275 142 0 10 chr3 529235 529439 -217507719 - L1PA8A LINE L1 -3 6443 6242 26104 138 9 17 chr3 529441 535624 -217501534 - L1PA8A LINE L1 -250 6196 2 475 299 137 10 chr3 537236 537433 -217499725 - MIR SINE MIR -10 252 31 328 327 9 0 chr3 537710 537820 -217499338 + MLT1I LTR MaLR 281 391 -18 277 348 106 12 chr3 537873 538034 -217499124 - MER5A DNA MER1_type -13 176 1 263 382 21 21 chr3 538914 539058 -217498100 - MER5A DNA MER1_type -44 145 2 303 306 104 22 chr3 540115 540249 -217496909 + LTR33 LTR ERVL 3 147 -374 22 0 0 0 chr3 541327 541349 -217495809 + AT_rich Low_complexity Low_complexity 1 22 0 353 345 76 29 chr3 542573 542744 -217494414 - MER5A DNA MER1_type -3 186 8 4494 155 20 27 chr3 542882 543667 -217493491 - LTR39 LTR ERV1 -2 781 2 26 0 0 0 chr3 545050 545076 -217492082 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 545716 545738 -217491420 + AT_rich Low_complexity Low_complexity 1 22 0 183 376 56 16 chr3 545893 546018 -217491140 - MIR SINE MIR -76 186 57 2226 124 0 0 chr3 547118 547416 -217489742 + AluSg SINE Alu 1 298 -12 1126 146 34 0 chr3 548391 548597 -217488561 + L1MA8 LINE L1 6067 6279 -12 25 0 0 0 chr3 549102 549127 -217488031 + AT_rich Low_complexity Low_complexity 1 25 0 2348 92 3 6 chr3 549836 550150 -217487008 + AluSp SINE Alu 1 313 0 201 300 38 12 chr3 551107 551187 -217485971 - L2 LINE L2 -5 3308 3227 437 214 161 0 chr3 551815 551927 -217485231 + MIR SINE MIR 133 262 0 2012 132 10 16 chr3 552803 553106 -217484052 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr3 553166 553188 -217483970 + AT_rich Low_complexity Low_complexity 1 22 0 856 270 23 0 chr3 553499 553714 -217483444 + MER58A DNA MER1_type 1 220 -4 282 353 131 18 chr3 554403 554561 -217482597 - MIR SINE MIR -10 252 61 2105 55 0 0 chr3 554561 554818 -217482340 + AluY SINE Alu 40 296 -15 282 353 131 18 chr3 554818 554880 -217482278 - MIR SINE MIR -201 61 7 32 0 0 0 chr3 555125 555157 -217482001 + AT_rich Low_complexity Low_complexity 1 32 0 311 322 29 41 chr3 555267 555438 -217481720 - L1 LINE L1 -1854 4292 4124 256 214 95 24 chr3 555501 555585 -217481573 + MIR SINE MIR 30 119 -89 202 387 13 0 chr3 555668 555743 -217481415 + L2 LINE L2 3182 3257 -15 374 267 112 64 chr3 555957 556144 -217481014 + MIR SINE MIR 2 197 -65 453 108 12 48 chr3 557262 557345 -217479813 - MADE1 DNA Mariner 0 80 1 24 0 0 0 chr3 558907 558931 -217478227 + AT_rich Low_complexity Low_complexity 1 24 0 2284 89 7 3 chr3 560931 561233 -217475925 + AluSq SINE Alu 2 304 -9 1138 126 11 0 chr3 562220 562394 -217474764 + AluSg/x SINE Alu 131 306 -6 1723 199 0 0 chr3 562471 562772 -217474386 - AluSx SINE Alu -11 301 1 22 35 0 0 chr3 564301 564330 -217472828 + AT_rich Low_complexity Low_complexity 1 29 0 255 125 0 0 chr3 564366 564406 -217472752 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1569 239 43 108 chr3 564439 564997 -217472161 - MLT1F1 LTR MaLR 0 567 24 810 113 0 0 chr3 565013 565119 -217472039 + AluSg/x SINE Alu 177 282 -28 195 114 0 0 chr3 565124 565159 -217471999 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 235 180 20 0 chr3 565564 565614 -217471544 - MLT1I LTR MaLR -1 408 358 597 311 97 12 chr3 565667 565915 -217471243 - MLT1I LTR MaLR -140 269 1 1980 189 3 3 chr3 566381 566746 -217470412 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 567790 567812 -217469346 + AT_rich Low_complexity Low_complexity 1 22 0 256 312 37 37 chr3 569956 570065 -217467093 + MIR SINE MIR 59 167 -95 54 84 0 0 chr3 571087 571218 -217465940 + AT_rich Low_complexity Low_complexity 1 131 0 606 177 39 23 chr3 571408 571538 -217465620 + FLAM_C SINE Alu 1 132 -1 251 316 221 6 chr3 571542 571700 -217465458 - MIR SINE MIR -43 219 28 778 357 116 27 chr3 572680 573386 -217463772 + L2 LINE L2 2112 2880 -434 272 282 68 61 chr3 573744 573907 -217463251 + LTR16C LTR ERVL 326 489 -2 362 383 19 13 chr3 574129 574283 -217462875 + L2 LINE L2 3118 3272 0 1028 294 137 19 chr3 574352 575198 -217461960 + L2 LINE L2 2355 3312 -1 21 57 0 0 chr3 575596 575631 -217461527 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 575708 575730 -217461428 + AT_rich Low_complexity Low_complexity 1 22 0 241 275 0 14 chr3 576318 576387 -217460771 + MIR SINE MIR 174 241 -21 562 274 104 0 chr3 576655 576819 -217460339 - MER5A DNA MER1_type -8 181 1 324 0 0 0 chr3 578377 578413 -217458745 + (CA)n Simple_repeat Simple_repeat 1 36 0 3271 159 17 22 chr3 579374 579958 -217457200 + L1PA16 LINE L1 5493 6073 -93 613 254 122 0 chr3 580354 580551 -217456607 + MER58A DNA MER1_type 2 222 -2 657 290 106 5 chr3 581783 582000 -217455158 + MIR SINE MIR 8 246 -16 302 263 68 79 chr3 582153 582343 -217454815 + MLT1L LTR MaLR 207 394 -221 23 54 0 0 chr3 582669 582706 -217454452 + AT_rich Low_complexity Low_complexity 1 37 0 1613 154 10 61 chr3 582933 583245 -217453913 + AluSq SINE Alu 1 296 -17 670 165 31 16 chr3 583683 583810 -217453348 + FLAM_C SINE Alu 1 129 -4 567 289 59 30 chr3 584419 584733 -217452425 + MLT1I LTR MaLR 56 405 -4 360 350 85 0 chr3 584760 584960 -217452198 + L2 LINE L2 1753 1969 -1345 563 310 78 52 chr3 584960 585347 -217451811 + L2 LINE L2 2576 2972 -342 1477 267 95 40 chr3 585395 585890 -217451268 + MLT1E LTR MaLR 35 556 -37 192 346 51 0 chr3 585951 586029 -217451129 + L2 LINE L2 2992 3073 -240 227 263 126 53 chr3 586087 586182 -217450976 + MLT1J LTR MaLR 1 102 -409 272 315 117 9 chr3 586182 586293 -217450865 + MIR SINE MIR 140 262 0 189 200 140 0 chr3 586473 586523 -217450635 - L2 LINE L2 -8 3264 3208 473 290 58 0 chr3 587005 587143 -217450015 - MIR SINE MIR -17 245 100 728 223 38 0 chr3 588243 588400 -217448758 + MER3 DNA MER1_type 37 199 -10 240 304 88 35 chr3 591006 591177 -217445981 - MLT1L LTR MaLR -229 386 207 450 302 23 0 chr3 591207 591336 -217445822 - MLT1L LTR MaLR -353 262 131 379 270 0 11 chr3 591443 591532 -217445626 - MER2 DNA MER2_type -250 95 8 898 313 79 25 chr3 592602 593034 -217444124 + LTR16B LTR ERVL 8 462 -2 21 0 0 0 chr3 593077 593098 -217444060 + AT_rich Low_complexity Low_complexity 1 21 0 596 328 69 33 chr3 593113 593564 -217443594 - L1MC4a LINE L1 -1969 5839 5373 195 246 98 0 chr3 594862 594923 -217442235 - MIR SINE MIR -27 235 169 846 262 81 89 chr3 594945 595338 -217441820 + LTR16B LTR ERVL 1 390 -74 421 101 0 38 chr3 595344 595423 -217441735 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 314 285 16 41 chr3 595453 595490 -217441668 + LTR16B LTR ERVL 345 381 -83 1741 148 0 0 chr3 595490 595754 -217441404 - AluSx SINE Alu -44 268 5 314 285 16 41 chr3 595754 595839 -217441319 + LTR16B LTR ERVL 381 464 0 732 309 129 35 chr3 596179 596661 -217440497 + MLT1H LTR MaLR 18 544 -5 851 308 144 13 chr3 596689 597222 -217439936 + MLT1L LTR MaLR 1 603 -12 21 0 0 0 chr3 597500 597521 -217439637 + AT_rich Low_complexity Low_complexity 1 21 0 373 216 216 8 chr3 599094 599228 -217437930 + MLT1H LTR MaLR 1 162 -387 323 293 79 43 chr3 599400 599653 -217437505 + MLT1H LTR MaLR 294 555 0 4851 120 3 0 chr3 600491 601208 -217435950 + L1PA11 LINE L1 5455 6173 -1 309 67 0 0 chr3 601515 601560 -217435598 - MLT2A1 LTR ERVL -10 434 390 378 267 0 0 chr3 601561 601651 -217435507 - L1MC4 LINE L1 -1339 6703 6614 279 173 0 0 chr3 601653 601705 -217435453 + (CA)n Simple_repeat Simple_repeat 2 53 0 821 65 0 0 chr3 601706 601813 -217435345 - HERVL LTR ERVL -1239 4415 4309 319 86 69 26 chr3 601813 601929 -217435229 + (TA)n Simple_repeat Simple_repeat 1 121 0 2648 86 35 15 chr3 601929 602326 -217434832 - MLT2A1 LTR ERVL -39 405 1 41436 72 8 13 chr3 602326 608006 -217429152 - HERVL-A1-A1 LTR ERVL 0 5654 1 3240 71 40 0 chr3 608009 608434 -217428724 - MLT2A1 LTR ERVL -2 442 1 180 111 0 0 chr3 608535 608562 -217428596 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1375 168 50 42 chr3 609094 609356 -217427802 + AluJb SINE Alu 1 264 -48 603 86 19 9 chr3 610662 610767 -217426391 + (TA)n Simple_repeat Simple_repeat 1 106 0 24 67 0 0 chr3 610796 610841 -217426317 + AT_rich Low_complexity Low_complexity 1 45 0 809 243 0 0 chr3 610841 610993 -217426165 + AluJb SINE Alu 129 280 -32 1969 149 39 3 chr3 611049 611384 -217425774 - MER7A DNA MER2_type 0 346 2 486 266 65 26 chr3 612037 612191 -217424967 - MIR SINE MIR 0 262 103 258 210 60 60 chr3 613240 613340 -217423818 + MIR SINE MIR 100 199 -63 230 295 162 0 chr3 613563 613668 -217423490 - MIR SINE MIR -101 161 40 387 152 27 18 chr3 614174 614286 -217422872 + MER96B DNA MER1_type? 66 178 -239 270 183 0 0 chr3 614418 614489 -217422669 + (TA)n Simple_repeat Simple_repeat 2 72 0 296 284 0 0 chr3 614497 614578 -217422580 + MER96B DNA MER1_type? 330 410 -7 562 306 38 16 chr3 614743 614929 -217422229 - MIR SINE MIR -69 193 4 1687 198 18 3 chr3 615382 615721 -217421437 - MER2 DNA MER2_type 0 344 1 2102 141 3 0 chr3 615721 616019 -217421139 - AluSx SINE Alu -13 299 1 218 281 83 0 chr3 616995 617091 -217420067 + MIR SINE MIR 110 213 -49 469 113 0 0 chr3 617217 617279 -217419879 + AluSg/x SINE Alu 217 278 -34 210 336 97 9 chr3 617657 617770 -217419388 + L2 LINE L2 3190 3312 -1 1612 162 0 35 chr3 619114 619398 -217417760 + AluJo SINE Alu 6 279 -33 22 0 0 0 chr3 621984 622006 -217415152 + AT_rich Low_complexity Low_complexity 1 22 0 592 271 52 29 chr3 622253 622463 -217414695 + LTR33 LTR ERVL 6 220 -301 1366 273 112 12 chr3 622555 623064 -217414094 - MLT1G1 LTR MaLR 0 595 36 274 270 11 11 chr3 623136 623225 -217413933 + LTR33 LTR ERVL 433 521 0 1058 240 78 18 chr3 624300 624684 -217412474 - LTR50 LTR ERVL -3 792 386 255 211 42 0 chr3 624815 624886 -217412272 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 332 326 0 36 chr3 625090 625228 -217411930 - MIR SINE MIR -12 250 118 266 217 42 192 chr3 625340 625460 -217411698 - MER91A DNA MER1_type -5 191 90 621 339 12 0 chr3 625467 625632 -217411526 - MER91A DNA MER1_type -28 168 2 1064 244 94 77 chr3 625782 626188 -217410970 - MLT1F LTR MaLR -3 539 123 2161 109 0 32 chr3 626188 626499 -217410659 - AluSg SINE Alu -9 301 1 1064 244 94 77 chr3 626499 626547 -217410611 - MLT1F LTR MaLR -419 123 77 21 0 0 0 chr3 626740 626761 -217410397 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 627384 627405 -217409753 + AT_rich Low_complexity Low_complexity 1 21 0 300 91 0 0 chr3 628920 628964 -217408194 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 334 274 37 44 chr3 628995 629130 -217408028 + MER117 DNA MER1_type 64 197 0 2002 153 132 5 chr3 629158 629536 -217407622 - MSTA LTR MaLR -1 427 2 228 359 11 22 chr3 629598 629690 -217407468 + MER5B DNA MER1_type 88 178 0 22 0 0 0 chr3 629716 629738 -217407420 + AT_rich Low_complexity Low_complexity 1 22 0 749 129 0 0 chr3 629741 629857 -217407301 - L1MA2 LINE L1 -9 6295 6180 750 165 8 0 chr3 630422 630543 -217406615 - FLAM_C SINE Alu -11 122 1 357 93 0 0 chr3 630561 630615 -217406543 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 308 0 0 chr3 630652 630704 -217406454 + CT-rich Low_complexity Low_complexity 3 54 0 207 69 0 0 chr3 630706 630735 -217406423 + (CA)n Simple_repeat Simple_repeat 1 29 0 2158 169 54 7 chr3 631470 631878 -217405280 + MSTA LTR MaLR 1 427 -1 6375 186 132 9 chr3 631883 633286 -217403872 + MSTA-int LTR MaLR 5 1580 0 2137 152 53 22 chr3 633286 633661 -217403497 + MSTA LTR MaLR 1 392 -36 2003 131 0 29 chr3 633661 633975 -217403183 - AluSg SINE Alu -5 305 1 2137 152 53 22 chr3 633975 634014 -217403144 + MSTA LTR MaLR 392 428 0 1497 182 7 107 chr3 634014 634427 -217402731 - MLT1B LTR MaLR -16 374 3 2811 207 23 58 chr3 634608 635356 -217401802 - MER72 LTR ERV1 0 722 1 237 250 25 0 chr3 635399 635479 -217401679 - HsTC2 DNA Tc2 0 1898 1817 329 335 30 6 chr3 635626 635793 -217401365 + L1MEd LINE L1 447 617 -5502 946 236 38 5 chr3 635916 636128 -217401030 + MER58A DNA MER1_type 6 224 0 573 278 25 6 chr3 636133 636295 -217400863 - MIR SINE MIR -56 206 42 243 87 87 22 chr3 636350 636396 -217400762 + L2 LINE L2 3265 3313 0 264 250 0 42 chr3 636410 636482 -217400676 - MIR SINE MIR -176 86 18 2331 64 0 32 chr3 636944 637257 -217399901 - AluY SINE Alu -8 303 1 351 206 14 14 chr3 637465 637538 -217399620 - MIR SINE MIR -188 74 2 282 369 27 0 chr3 637987 638136 -217399022 + L2 LINE L2 2053 2205 -1109 440 295 7 40 chr3 638485 638634 -217398524 - MER5B DNA MER1_type -34 144 1 592 199 46 8 chr3 639060 639191 -217397967 - MER20 DNA MER1_type -21 198 63 495 197 120 0 chr3 639191 639308 -217397850 + FLAM_A SINE Alu 11 141 -1 319 278 139 56 chr3 639497 639841 -217397317 + MLT1H LTR MaLR 108 491 -58 7267 121 9 10 chr3 639841 641743 -217395415 + L1PA8A LINE L1 4220 6129 -2 319 278 139 56 chr3 641743 641794 -217395364 + MLT1H LTR MaLR 491 536 -13 766 255 91 26 chr3 642020 642251 -217394907 - MIR SINE MIR -14 248 3 1174 203 28 46 chr3 643656 643982 -217393176 + MER33 DNA MER1_type 5 324 0 1028 178 26 4 chr3 644184 644448 -217392710 + AluSx SINE Alu 1 270 -42 286 161 69 0 chr3 644450 644537 -217392621 + AluSg/x SINE Alu 176 268 -32 286 161 69 0 chr3 644539 644626 -217392532 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 644628 644715 -217392443 + AluSg/x SINE Alu 176 268 -32 340 138 69 0 chr3 644717 644804 -217392354 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 644806 644893 -217392265 + AluSg/x SINE Alu 176 268 -32 329 138 69 0 chr3 644895 644982 -217392176 + AluSg/x SINE Alu 178 270 -32 290 149 69 0 chr3 644984 645071 -217392087 + AluSg/x SINE Alu 176 268 -32 329 149 64 0 chr3 645073 645167 -217391991 + AluSg/x SINE Alu 176 275 -25 23 0 0 0 chr3 645186 645209 -217391949 + GC_rich Low_complexity Low_complexity 1 23 0 356 288 83 51 chr3 645386 645625 -217391533 - MIR SINE MIR -6 256 8 523 320 115 4 chr3 646278 646512 -217390646 - MIR SINE MIR -2 260 1 2158 91 0 10 chr3 647284 647593 -217389565 - L1PA13 LINE L1 -2 6161 5856 319 247 213 20 chr3 648144 648294 -217388864 - MER5A DNA MER1_type 0 189 11 1139 330 52 7 chr3 648324 648911 -217388247 + L2 LINE L2 2459 3070 -243 705 270 107 67 chr3 648913 649498 -217387660 - MLT1G1 LTR MaLR 0 595 1 384 247 190 17 chr3 649519 649693 -217387465 + L2 LINE L2 3106 3309 -4 187 297 0 16 chr3 649758 649822 -217387336 + MIR SINE MIR 187 249 -13 403 267 0 0 chr3 650110 650200 -217386958 + MIR SINE MIR 101 190 -72 2068 181 8 3 chr3 650249 650620 -217386538 + MER93b LTR ERV1 1 373 0 221 160 217 19 chr3 651056 651162 -217385996 + MIR SINE MIR 125 251 -11 1531 157 91 49 chr3 651551 651901 -217385257 - MLT1A1 LTR MaLR 0 365 1 445 125 0 0 chr3 652700 652797 -217384361 + AluS SINE Alu 221 317 0 1041 238 94 3 chr3 653291 653598 -217383560 + MER2 DNA MER2_type 1 335 -10 492 293 157 58 chr3 654552 654928 -217382230 + MLT1J2 LTR MaLR 1 413 -37 297 273 27 55 chr3 654986 655096 -217382062 - MIR SINE MIR -31 231 125 724 233 57 5 chr3 656254 656447 -217380711 - MER3 DNA MER1_type -2 207 5 1080 204 33 49 chr3 656459 656731 -217380427 + MER33 DNA MER1_type 1 269 -2316 2030 148 0 0 chr3 656731 657029 -217380129 - AluSx SINE Alu -14 298 1 1080 204 33 49 chr3 657029 657085 -217380073 + MER33 DNA MER1_type 269 324 0 1162 275 88 10 chr3 657121 657507 -217379651 - LTR65 LTR ERV1 -29 640 225 180 297 128 34 chr3 657685 657833 -217379325 + L2 LINE L2 2895 3056 -216 231 280 56 19 chr3 657975 658082 -217379076 + L2 LINE L2 3201 3311 -2 688 262 27 22 chr3 659101 659284 -217377874 - MER5A DNA MER1_type -3 186 3 308 237 237 0 chr3 659544 659637 -217377521 - L2 LINE L2 0 3313 3199 819 268 107 53 chr3 659652 660175 -217376983 - MLT1H1 LTR MaLR -2 553 3 702 250 109 0 chr3 660412 660596 -217376562 - MIR SINE MIR -1 261 58 29 70 0 0 chr3 662749 662806 -217374352 + AT_rich Low_complexity Low_complexity 1 57 0 180 152 0 0 chr3 662870 662903 -217374255 + (TAA)n Simple_repeat Simple_repeat 3 35 0 301 289 11 0 chr3 663025 663115 -217374043 - L1MC4 LINE L1 -1339 6703 6613 23 78 0 0 chr3 664341 664392 -217372766 + AT_rich Low_complexity Low_complexity 1 51 0 362 326 23 0 chr3 664521 664650 -217372508 + MER103 DNA DNA 24 155 -11 1988 135 4 0 chr3 665903 666204 -217370954 - AluSx SINE Alu 0 302 1 282 353 83 0 chr3 666272 666405 -217370753 - MER5A DNA MER1_type 0 189 46 352 267 168 31 chr3 666456 666647 -217370511 - L2 LINE L2 -69 3244 3028 401 188 0 10 chr3 666848 666944 -217370214 + (CA)n Simple_repeat Simple_repeat 1 95 0 1615 178 52 0 chr3 666966 667253 -217369905 + AluJb SINE Alu 1 302 -10 946 329 36 17 chr3 667334 667745 -217369413 + L3 LINE CR1 946 1364 -213 404 261 164 48 chr3 668314 668536 -217368622 + MER113 DNA MER1_type? 38 312 -209 2202 117 7 0 chr3 668536 668845 -217368313 + AluSx SINE Alu 1 311 -1 404 261 164 48 chr3 668845 668952 -217368206 + MER113 DNA MER1_type? 312 405 -116 232 353 39 0 chr3 669353 669455 -217367703 - L2 LINE L2 0 3272 3167 876 216 52 28 chr3 669512 669725 -217367433 - MER20 DNA MER1_type 0 219 2 831 186 6 27 chr3 671808 671991 -217365167 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 673524 673590 -217363568 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 674097 674345 -217362813 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 674778 674893 -217362265 - L2 LINE L2 -8 3305 3190 215 305 180 8 chr3 676305 676433 -217360725 + L2 LINE L2 3160 3309 -4 990 196 0 0 chr3 678233 678406 -217358752 - AluJb SINE Alu -5 307 135 243 264 36 82 chr3 679086 679196 -217357962 + MLT1K LTR MaLR 462 566 -22 194 152 0 22 chr3 680391 680437 -217356721 + GA-rich Low_complexity Low_complexity 2 46 0 336 154 0 0 chr3 680551 680603 -217356555 + L2 LINE L2 3261 3312 -1 1794 175 0 3 chr3 681156 681447 -217355711 - AluJb SINE Alu -22 290 1 22 35 0 0 chr3 682976 683005 -217354153 + AT_rich Low_complexity Low_complexity 1 29 0 234 150 0 0 chr3 683041 683081 -217354077 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1563 241 43 108 chr3 683114 683672 -217353486 - MLT1F1 LTR MaLR 0 567 24 805 115 0 0 chr3 683688 683834 -217353324 + AluSg/x SINE Alu 177 322 0 237 180 20 0 chr3 684239 684289 -217352869 - MLT1I LTR MaLR -1 408 358 611 306 97 12 chr3 684342 684590 -217352568 - MLT1I LTR MaLR -140 269 1 2016 186 3 3 chr3 685056 685421 -217351737 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 686465 686487 -217350671 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 37 37 chr3 688630 688739 -217348419 + MIR SINE MIR 59 167 -95 41 98 0 0 chr3 689761 689893 -217347265 + AT_rich Low_complexity Low_complexity 1 132 0 602 177 39 31 chr3 690083 690213 -217346945 + FLAM_C SINE Alu 1 131 -2 255 285 228 13 chr3 690217 690375 -217346783 - MIR SINE MIR -43 219 28 250 285 0 0 chr3 691246 691323 -217345835 + FRAM/FAM SINE Alu 14 81 -94 627 235 37 31 chr3 691348 691510 -217345648 + AluJb SINE Alu 149 311 -1 679 258 0 12 chr3 691747 691910 -217345248 - AluJb SINE Alu -23 289 129 346 314 96 13 chr3 691991 692147 -217345011 + MIR SINE MIR 46 214 -48 4981 94 6 1 chr3 692153 692854 -217344304 + L1PA10 LINE L1 5453 6156 -12 227 129 0 0 chr3 692897 692928 -217344230 + L2 LINE L2 3263 3293 -20 1918 233 93 14 chr3 693031 693516 -217343642 - MLT1E LTR MaLR -4 589 67 201 347 31 10 chr3 693520 693618 -217343540 + L3 LINE CR1 1334 1433 -144 580 292 53 19 chr3 694144 694353 -217342805 + MIR SINE MIR 46 261 -1 566 289 142 0 chr3 695793 695990 -217341168 + MIR SINE MIR 30 254 -8 29 0 0 0 chr3 696150 696179 -217340979 + AT_rich Low_complexity Low_complexity 1 29 0 418 303 82 26 chr3 696729 696924 -217340234 - MIR SINE MIR -2 260 55 254 273 225 23 chr3 697014 697124 -217340034 - MIR SINE MIR -37 171 36 1779 123 40 7 chr3 698156 698466 -217338692 + AluSx SINE Alu 1 319 0 25 0 0 0 chr3 698903 698928 -217338230 + AT_rich Low_complexity Low_complexity 1 25 0 207 204 0 41 chr3 699752 699801 -217337357 + CT-rich Low_complexity Low_complexity 5 51 0 1922 241 76 3 chr3 700119 700695 -217336463 + L1MC4 LINE L1 6459 7076 -966 1755 239 123 3 chr3 700704 701295 -217335863 + L1MC4 LINE L1 7238 7899 -143 233 329 0 47 chr3 702669 702754 -217334404 + L2 LINE L2 3191 3271 -42 283 296 71 10 chr3 702996 703094 -217334064 - L2 LINE L2 0 3313 3210 195 298 48 96 chr3 703456 703523 -217333635 - MIR SINE MIR -27 235 166 5867 103 28 1 chr3 703523 704430 -217332728 + L1PA13 LINE L1 5230 6160 -3 195 298 48 96 chr3 704430 704550 -217332608 - MIR SINE MIR -96 166 57 1919 178 61 16 chr3 704637 705063 -217332095 + MER65A LTR ERV1 1 445 0 195 381 48 24 chr3 705171 705339 -217331819 - MER5A DNA MER1_type -15 174 3 476 366 98 17 chr3 705479 705602 -217331556 - L2 LINE L2 0 3313 3201 261 0 0 0 chr3 705602 705631 -217331527 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 476 366 98 17 chr3 705631 705979 -217331179 - L2 LINE L2 -112 3201 2804 418 328 56 33 chr3 706615 706920 -217330238 + MER68 LTR ERV1 231 542 -20 1371 224 7 0 chr3 707074 707355 -217329803 + Tigger7 DNA MER2_type 1 283 -450 361 324 85 0 chr3 707496 707672 -217329486 - L1ME4a LINE L1 -206 5915 5725 1986 140 4 0 chr3 709762 710040 -217327118 - AluSx SINE Alu -33 279 1 379 270 0 0 chr3 712780 712869 -217324289 + Tigger7 DNA MER2_type 2499 2587 0 219 183 39 19 chr3 712929 713033 -217324125 + (TA)n Simple_repeat Simple_repeat 1 106 0 798 264 111 97 chr3 713055 713747 -217323411 + MER21B LTR ERV1 12 713 -150 2514 211 3 63 chr3 713786 714375 -217322783 - MLT2B3 LTR ERVL 0 554 1 322 247 22 22 chr3 716409 716498 -217320660 + MLT1H LTR MaLR 136 224 -325 233 326 0 0 chr3 716636 716728 -217320430 + MLT1H LTR MaLR 454 545 -4 2122 97 4 0 chr3 716938 717216 -217319942 + AluSg SINE Alu 1 279 -31 267 31 0 0 chr3 717222 717254 -217319904 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr3 717922 717952 -217319206 + AT_rich Low_complexity Low_complexity 1 30 0 674 329 44 17 chr3 718193 718537 -217318621 + L2 LINE L2 2196 2548 -766 721 292 4 30 chr3 718756 718992 -217318166 + MIR SINE MIR 23 252 -10 339 300 44 128 chr3 719424 719509 -217317649 + L2 LINE L2 3020 3111 -161 1508 186 95 23 chr3 719509 719858 -217317300 - MLT1A2 LTR MaLR 0 374 1 339 300 44 128 chr3 719858 720045 -217317113 + L2 LINE L2 3111 3269 -3 366 307 26 9 chr3 720187 720301 -217316857 + MIR3 SINE MIR 87 202 -6 190 294 119 16 chr3 720366 720492 -217316666 + L2 LINE L2 2041 2179 -1135 1081 182 14 5 chr3 720503 720717 -217316441 + MER58A DNA MER1_type 9 224 0 1104 289 43 109 chr3 720717 721930 -217315228 + L2 LINE L2 2176 3311 -2 201 161 18 71 chr3 722380 722436 -217314722 - L2 LINE L2 -755 2559 2507 297 301 130 21 chr3 722992 723231 -217313927 + MLT1J LTR MaLR 228 492 -19 2550 291 95 34 chr3 724680 725218 -217311940 + L2 LINE L2 34 538 -2776 2323 100 3 0 chr3 725218 725528 -217311630 - AluY SINE Alu 0 311 1 2550 291 95 34 chr3 725528 726182 -217310976 + L2 LINE L2 538 1299 -2015 1061 314 133 13 chr3 726238 726988 -217310170 + L2 LINE L2 2486 3313 0 351 335 197 0 chr3 727788 728006 -217309152 - L3 LINE CR1 -1 1576 1316 354 301 44 65 chr3 728155 728540 -217308618 - MLT1J1 LTR MaLR -20 426 50 768 345 75 18 chr3 728672 729072 -217308086 - L3 LINE CR1 -251 1326 904 462 350 53 31 chr3 729529 729849 -217307309 - L1ME LINE L1 -318 5803 5477 248 192 68 27 chr3 729946 730019 -217307139 - L1M3 LINE L1 -729 5442 5367 320 327 79 0 chr3 730135 730236 -217306922 + L2 LINE L2 2432 2540 -774 189 290 11 75 chr3 730246 730339 -217306819 + L2 LINE L2 3173 3259 -54 1595 184 150 36 chr3 730562 730655 -217306503 + MLT1D LTR MaLR 1 82 -423 4011 80 30 2 chr3 730655 731194 -217305964 - MER41A LTR ERV1 0 554 1 1595 184 150 36 chr3 731194 731546 -217305612 + MLT1D LTR MaLR 82 497 -8 227 114 0 0 chr3 731759 731794 -217305364 - MLT2D LTR ERVL 0 515 481 388 104 13 13 chr3 731800 731828 -217305330 + (GA)n Simple_repeat Simple_repeat 1 28 -49 279 0 0 0 chr3 731828 731859 -217305299 + (CA)n Simple_repeat Simple_repeat 2 32 0 388 104 13 13 chr3 731859 731907 -217305251 + (GA)n Simple_repeat Simple_repeat 27 77 0 1521 168 29 59 chr3 731907 732282 -217304876 - MLT2D LTR ERVL -48 366 3 24 32 0 0 chr3 732448 732479 -217304679 + AT_rich Low_complexity Low_complexity 1 31 0 1092 182 47 14 chr3 732622 732980 -217304178 + MER61B LTR ERV1 1 389 -36 22 0 0 0 chr3 733611 733633 -217303525 + AT_rich Low_complexity Low_complexity 1 22 0 217 256 133 44 chr3 733956 734046 -217303112 - MIR3 SINE MIR -108 100 3 23 54 0 0 chr3 734214 734251 -217302907 + AT_rich Low_complexity Low_complexity 1 37 0 612 273 67 29 chr3 735222 735431 -217301727 - MIR SINE MIR -7 255 39 342 331 35 7 chr3 735815 735960 -217301198 + MIR3 SINE MIR 55 203 -5 2145 201 14 14 chr3 735986 736414 -217300744 + MSTA LTR MaLR 1 428 0 750 255 27 0 chr3 736504 736692 -217300466 + MER20 DNA MER1_type 27 219 0 1895 228 82 8 chr3 738187 738688 -217298470 - MLT1F LTR MaLR -2 540 3 617 343 58 29 chr3 738745 739121 -217298037 - L2 LINE L2 -86 3227 2841 329 380 25 13 chr3 741079 741237 -217295921 + L2 LINE L2 2936 3095 -177 290 303 98 16 chr3 741305 741427 -217295731 - MIR SINE MIR -21 241 110 317 167 0 50 chr3 741532 741592 -217295566 - AluJo SINE Alu -6 295 239 894 195 13 0 chr3 741593 741752 -217295406 - AluJo SINE Alu -136 176 16 181 132 19 19 chr3 741802 741855 -217295303 + (TTATA)n Simple_repeat Simple_repeat 5 57 0 190 130 19 37 chr3 741881 741935 -217295223 + (TATAA)n Simple_repeat Simple_repeat 2 54 0 604 251 94 21 chr3 741937 742128 -217295030 - MER63A DNA MER1_type -5 205 1 256 287 35 61 chr3 742182 742297 -217294861 + L2 LINE L2 3161 3272 0 186 171 0 0 chr3 742780 742821 -217294337 + (ATG)n Simple_repeat Simple_repeat 2 42 0 316 264 231 0 chr3 742894 743015 -217294143 + MIR SINE MIR 23 171 -91 679 254 20 5 chr3 743165 743366 -217293792 + MER3 DNA MER1_type 6 209 0 372 306 200 0 chr3 743963 744123 -217293035 - MIR3 SINE MIR -1 207 16 426 267 14 34 chr3 745956 746102 -217291056 - Charlie8 DNA MER1_type -2274 143 1 273 293 113 0 chr3 747757 747863 -217289295 + MIR SINE MIR 143 260 -2 370 357 7 29 chr3 747892 748032 -217289126 + L2 LINE L2 3134 3270 -2 825 200 0 0 chr3 748349 748489 -217288669 - FRAM SINE Alu -19 157 18 1893 209 76 15 chr3 749410 749884 -217287274 + MLT1D LTR MaLR 3 505 0 784 248 70 33 chr3 750066 750308 -217286850 + MIR SINE MIR 2 252 -10 224 233 16 16 chr3 750318 750380 -217286778 - MIR SINE MIR -61 147 93 589 211 0 23 chr3 750869 751002 -217286156 - MER5A DNA MER1_type -59 130 1 1476 176 146 5 chr3 752135 752504 -217284654 - MSTB1 LTR MaLR -4 428 8 685 288 23 0 chr3 752907 753084 -217284074 - MIR SINE MIR -26 236 56 249 348 34 0 chr3 753119 753237 -217283921 + MIR SINE MIR 139 260 -2 371 217 29 0 chr3 754367 754436 -217282722 + MER58 DNA MER1_type 2350 2420 0 929 331 78 18 chr3 754632 754799 -217282359 + L2 LINE L2 2455 2610 -703 1372 210 57 20 chr3 754799 755151 -217282007 + MLT1A1 LTR MaLR 1 365 0 929 331 78 18 chr3 755151 755798 -217281360 + L2 LINE L2 2610 3309 -4 431 318 68 36 chr3 756834 757054 -217280104 - MIR SINE MIR -14 248 22 1805 152 7 0 chr3 757212 757489 -217279669 + AluSx SINE Alu 1 279 -33 336 119 15 30 chr3 757574 757641 -217279517 - Alu SINE Alu 0 301 236 22 0 0 0 chr3 758202 758224 -217278934 + AT_rich Low_complexity Low_complexity 1 22 0 233 355 13 0 chr3 758239 758315 -217278843 + L2 LINE L2 3182 3258 -14 232 289 12 60 chr3 758461 758544 -217278614 + MIR SINE MIR 21 99 -109 968 263 26 4 chr3 758756 758984 -217278174 - MIR SINE MIR -10 252 20 1972 114 14 21 chr3 759190 759480 -217277678 + AluSc SINE Alu 1 288 -21 261 349 0 0 chr3 760198 760281 -217276877 + L2 LINE L2 3190 3272 0 204 327 45 36 chr3 760432 760542 -217276616 + L2 LINE L2 3156 3266 -6 261 261 22 97 chr3 761410 761540 -217275618 + MIR SINE MIR 20 139 -69 193 260 26 65 chr3 761540 761617 -217275541 + MER5A DNA MER1_type 2 75 -114 5842 223 92 16 chr3 761618 763546 -217273612 + L1MDa LINE L1 14 2263 -4277 192 234 16 121 chr3 763726 763850 -217273308 + MIR SINE MIR 141 251 -11 365 261 43 58 chr3 765097 765235 -217271923 + MLT1L LTR MaLR 438 573 -42 1570 149 11 48 chr3 765709 766049 -217271109 + MER61C LTR ERV1 1 428 -6 1159 236 56 25 chr3 766061 766345 -217270813 - MER4D LTR ERV1 -56 847 555 1800 161 0 3 chr3 766420 766706 -217270452 - MER49 LTR ERV1 -638 285 1 240 283 87 0 chr3 767536 767628 -217269530 - MIR SINE MIR -92 170 71 1067 114 12 0 chr3 767772 767938 -217269220 + MER41B LTR ERV1 1 168 -467 2972 131 9 6 chr3 768040 768506 -217268652 + MER41B LTR ERV1 169 635 0 822 147 0 0 chr3 768779 768908 -217268250 + FLAM_C SINE Alu 2 130 -3 230 157 59 0 chr3 769328 769379 -217267779 + L1P LINE L1 577 630 -5516 371 98 0 0 chr3 770485 770536 -217266622 - MADE1 DNA Mariner -29 51 1 338 321 24 97 chr3 771211 771750 -217265408 - L2 LINE L2 -1 3312 2813 189 271 235 0 chr3 772043 772128 -217265030 - MIR3 SINE MIR -4 204 100 282 301 40 45 chr3 772295 772494 -217264664 + L1ME4a LINE L1 5732 5929 -192 293 256 144 38 chr3 772574 772734 -217264424 - MIR SINE MIR -26 236 60 21 57 0 0 chr3 773628 773663 -217263495 + AT_rich Low_complexity Low_complexity 1 35 0 1848 140 11 11 chr3 773826 774111 -217263047 + AluJb SINE Alu 1 285 -27 449 296 31 25 chr3 774126 774285 -217262873 - MIR SINE MIR -55 207 48 283 338 63 24 chr3 774862 775069 -217262089 - MIR SINE MIR -28 234 20 889 211 0 0 chr3 775161 775327 -217261831 - FRAM SINE Alu -18 158 1 600 79 20 10 chr3 775328 775429 -217261729 + (TTC)n Simple_repeat Simple_repeat 1 102 0 750 161 0 60 chr3 775989 776138 -217261020 + FLAM_C SINE Alu 1 140 -3 219 324 95 0 chr3 776276 776350 -217260808 - MIR3 SINE MIR -46 162 82 283 224 35 0 chr3 776435 776493 -217260665 - MER91C DNA MER1_type -17 123 64 287 365 42 18 chr3 777074 777241 -217259917 + MIR SINE MIR 20 190 -72 303 299 64 45 chr3 777285 777360 -217259798 + L2 LINE L2 3106 3178 -94 2344 141 8 0 chr3 777360 777721 -217259437 - THE1B LTR MaLR 0 364 1 303 299 64 45 chr3 777721 777802 -217259356 + L2 LINE L2 3178 3265 -7 261 368 30 30 chr3 778775 778908 -217258250 + MIR3 SINE MIR 6 138 -70 1161 238 18 28 chr3 780223 780509 -217256649 - MLT1C LTR MaLR 0 467 185 1146 202 125 35 chr3 780599 780886 -217256272 - MLT1D-int LTR MaLR -179 1192 880 3386 222 11 50 chr3 780973 781865 -217255293 - MLT1D-int LTR MaLR -488 883 27 1672 163 3 14 chr3 781882 782189 -217254969 + AluJb SINE Alu 3 306 0 1385 233 34 79 chr3 782191 782720 -217254438 - MLT1D LTR MaLR 0 505 1 358 312 85 0 chr3 782725 782866 -217254292 - MIR SINE MIR -2 260 108 1530 158 75 0 chr3 782869 783147 -217254011 - MSTB1 LTR MaLR 0 432 134 331 297 86 38 chr3 783817 784130 -217253028 - L1ME4a LINE L1 -68 6053 5726 423 274 0 0 chr3 784447 784549 -217252609 - MIR SINE MIR 0 262 161 2121 195 158 27 chr3 784549 785243 -217251915 - LTR48 LTR ERV1 0 729 1 290 270 11 11 chr3 785243 785332 -217251826 - MIR SINE MIR -98 164 76 824 216 125 4 chr3 785474 785706 -217251452 + MIR SINE MIR 2 261 -1 459 256 56 0 chr3 786396 786556 -217250602 + (TATATG)n Simple_repeat Simple_repeat 4 172 0 21 36 0 0 chr3 787699 787727 -217249431 + AT_rich Low_complexity Low_complexity 1 28 0 235 256 68 105 chr3 787914 788047 -217249111 - MIR SINE MIR -32 230 103 437 197 205 0 chr3 788131 788248 -217248910 - MIR SINE MIR -73 189 49 576 140 0 56 chr3 788329 788436 -217248722 - Tigger7 DNA MER2_type 0 2487 2387 * 2766 175 58 0 chr3 788425 788911 -217248247 - Tigger7 DNA MER2_type -1973 514 1 34 84 0 0 chr3 789825 789908 -217247250 + AT_rich Low_complexity Low_complexity 1 83 0 24 0 0 0 chr3 790128 790152 -217247006 + AT_rich Low_complexity Low_complexity 1 24 0 25 65 0 0 chr3 790902 790948 -217246210 + AT_rich Low_complexity Low_complexity 1 46 0 4523 72 7 0 chr3 791185 791771 -217245387 - LTR10C LTR ERV1 -1 590 1 2479 56 3 0 chr3 791799 792102 -217245056 + AluY SINE Alu 1 304 -7 428 222 30 30 chr3 792529 792664 -217244494 - MER69 DNA AcHobo -12 2514 2380 821 136 116 61 chr3 792876 793074 -217244084 + L1MA6 LINE L1 5821 6029 -271 230 421 86 17 chr3 793094 793327 -217243831 + L2 LINE L2 3009 3257 -15 761 284 102 0 chr3 793330 793566 -217243592 - MIR SINE MIR 0 262 3 2566 108 3 18 chr3 794293 794674 -217242484 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr3 797650 797678 -217239480 + AT_rich Low_complexity Low_complexity 1 28 0 333 174 0 0 chr3 798723 798792 -217238366 + (CA)n Simple_repeat Simple_repeat 1 69 0 375 307 12 18 chr3 798828 798991 -217238167 + (CA)n Simple_repeat Simple_repeat 1 162 0 293 294 5 53 chr3 799040 799250 -217237908 + (CA)n Simple_repeat Simple_repeat 1 199 0 359 171 14 0 chr3 800119 800189 -217236969 + MER116 DNA Mariner 1 71 -9 321 47 0 0 chr3 800677 800720 -217236438 + (TC)n Simple_repeat Simple_repeat 2 44 0 1712 215 66 17 chr3 800723 801193 -217235965 + MLT1D LTR MaLR 5 497 -8 192 276 92 72 chr3 801316 801468 -217235690 + MIR SINE MIR 31 185 -77 356 238 85 43 chr3 801594 801629 -217235529 - MER34B LTR ERV1 0 565 533 1387 222 73 9 chr3 801629 801972 -217235186 + MLT1A1 LTR MaLR 1 365 0 356 238 85 43 chr3 801972 802100 -217235058 - MER34B LTR ERV1 -32 533 395 1355 173 9 0 chr3 802115 802340 -217234818 + AluJo SINE Alu 84 310 -2 658 243 17 65 chr3 802345 802699 -217234459 - MER34B LTR ERV1 -184 381 4 273 228 63 47 chr3 803051 803178 -217233980 + L1MCa LINE L1 140 268 -6296 1034 296 25 46 chr3 803178 803359 -217233799 + L1MCa LINE L1 141 324 -5721 2130 52 0 0 chr3 803359 803628 -217233530 - AluY SINE Alu -6 305 37 1034 296 25 46 chr3 803628 803885 -217233273 + L1MCa LINE L1 324 570 -5475 312 146 0 0 chr3 804070 804118 -217233040 + Alu SINE Alu 235 282 -20 1860 206 47 67 chr3 804118 804652 -217232506 + LTR9 LTR ERV1 1 523 -89 915 93 0 0 chr3 804682 804800 -217232358 - AluSg1 SINE Alu -191 118 1 307 240 58 19 chr3 804800 804904 -217232254 + LTR19C LTR ERV1 672 779 0 198 91 0 0 chr3 804909 804942 -217232216 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1526 214 128 49 chr3 804942 805599 -217231559 + L1MCa LINE L1 619 1338 -4966 1969 144 0 10 chr3 805599 805734 -217231424 + AluSx SINE Alu 1 136 -176 2095 119 20 3 chr3 805734 806029 -217231129 + AluSx SINE Alu 1 300 -12 1969 144 0 10 chr3 806029 806184 -217230974 + AluSx SINE Alu 136 288 -24 1526 214 128 49 chr3 806184 806310 -217230848 + L1MCa LINE L1 1338 1453 -4851 276 100 0 0 chr3 807623 807663 -217229495 + (CA)n Simple_repeat Simple_repeat 2 41 0 1597 154 130 17 chr3 807818 808163 -217228995 - MLT1B LTR MaLR -2 388 5 1170 121 156 0 chr3 808646 808845 -217228313 + MER30 DNA MER1_type 1 230 0 1526 211 0 4 chr3 808909 809188 -217227970 + AluJb SINE Alu 6 283 -29 355 354 9 0 chr3 809214 809327 -217227831 + MIR SINE MIR 33 146 -116 517 205 192 26 chr3 809356 809507 -217227651 - MER5A DNA MER1_type -5 184 9 232 237 66 26 chr3 809511 809587 -217227571 + MIR SINE MIR 168 246 -16 311 285 74 104 chr3 810078 810404 -217226754 + L2 LINE L2 2996 3311 -2 186 189 0 0 chr3 810404 810441 -217226717 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 985 204 88 4 chr3 812533 812783 -217224375 + ORSL DNA AcHobo 2 272 -3 357 213 43 156 chr3 813163 813304 -217223854 + L2 LINE L2 3188 3312 -1 417 218 0 0 chr3 913633 913720 -217123438 - MER54B LTR ERVL -6 787 701 745 221 47 9 chr3 913729 914159 -217122999 + L1MCa LINE L1 2004 2486 -4259 373 189 0 0 chr3 914156 914230 -217122928 + L1MD3 LINE L1 7732 7805 -190 * 2724 246 22 22 chr3 914230 914792 -217122366 + L1MB7 LINE L1 4566 5127 -1057 5612 30 26 0 chr3 914792 915470 -217121688 + L1PA5 LINE L1 5457 6152 -2 2724 246 22 22 chr3 915470 916513 -217120645 + L1MB7 LINE L1 5127 6168 -16 6455 68 9 0 chr3 916527 917681 -217119477 - L1PA8 LINE L1 -2 6170 5083 190 272 130 53 chr3 918090 918259 -217118899 - L2 LINE L2 -2 3311 3130 462 248 94 0 chr3 918577 918694 -217118464 - FLAM_C SINE Alu -15 128 1 1378 164 0 33 chr3 918697 919001 -217118157 - L1 LINE L1 -1536 4610 4317 2452 215 77 10 chr3 919007 919629 -217117529 - L1MDa LINE L1 -5846 694 31 439 329 74 25 chr3 919717 919960 -217117198 + MIR SINE MIR 8 262 0 571 257 14 35 chr3 920030 920174 -217116984 + MIR3 SINE MIR 16 156 -52 1808 184 0 48 chr3 920684 921060 -217116098 - MLT1B LTR MaLR 0 390 33 278 65 0 22 chr3 921060 921106 -217116052 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1939 99 3 46 chr3 921118 921400 -217115758 - AluSc SINE Alu -39 270 1 2191 254 35 5 chr3 921902 922480 -217114678 + L2 LINE L2 1927 2521 -793 2268 220 64 8 chr3 922497 923238 -217113920 - L1ME1 LINE L1 -6 6160 5350 362 58 96 0 chr3 923238 923342 -217113816 + (TA)n Simple_repeat Simple_repeat 2 115 0 22558 150 12 13 chr3 923342 925806 -217111352 - L1PA10 LINE L1 -10 6473 4010 462 18 0 0 chr3 925806 925861 -217111297 + (TG)n Simple_repeat Simple_repeat 2 56 0 22558 150 12 13 chr3 925861 928267 -217108891 - L1PA10 LINE L1 -2473 4010 1610 841 30 0 0 chr3 928267 928368 -217108790 - L1PA4 LINE L1 -8 6147 6047 22558 150 12 13 chr3 928368 928668 -217108490 - L1PA10 LINE L1 -4873 1610 1311 203 0 37 0 chr3 928682 928709 -217108449 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 37441 82 5 2 chr3 928756 934881 -217102277 - L1PA5 LINE L1 0 6154 11 2324 183 15 28 chr3 934939 935477 -217101681 - L1PA10 LINE L1 -4734 1141 717 2709 190 6 2 chr3 935477 935983 -217101175 - L1PA10 LINE L1 -5367 508 1 642 154 83 6 chr3 935997 936153 -217101005 - L1M4 LINE L1 -799 5347 5180 1551 257 89 67 chr3 936163 936929 -217100229 + L2 LINE L2 2513 3313 0 2388 155 32 0 chr3 937586 938024 -217099134 - Tigger1 DNA MER2_type -1 2417 1966 7514 31 0 0 chr3 938026 939395 -217097763 - L1PA4 LINE L1 0 6155 4789 11492 196 35 9 chr3 939396 941716 -217095442 - L1M1 LINE L1 -4888 2677 298 625 261 61 6 chr3 941825 942005 -217095153 - L1M1 LINE L1 -7215 350 161 * 15789 133 7 8 chr3 941998 942902 -217094256 + L1P LINE L1 2296 3200 -2946 1526 97 9 44 chr3 942902 943129 -217094029 + AluY SINE Alu 84 302 -9 15789 133 7 8 chr3 943129 944961 -217092197 + L1P LINE L1 3200 5027 -1119 1699 132 3 0 chr3 944971 945258 -217091900 - L1P LINE L1 -990 5156 4869 * 5871 132 1 5 chr3 945256 946227 -217090931 - L1P LINE L1 -1620 4526 3560 10575 219 28 35 chr3 946228 951175 -217085983 - L1PA15-16 LINE L1 -2157 4692 8 459 163 0 0 chr3 951175 951255 -217085903 - Tigger1 DNA MER2_type -443 1975 1896 259 203 0 31 chr3 951257 951321 -217085837 + (TATG)n Simple_repeat Simple_repeat 2 63 0 11050 150 35 5 chr3 951330 953182 -217083976 - Tigger1 DNA MER2_type -511 1907 2 194 340 128 0 chr3 953391 953485 -217083673 + L2 LINE L2 3158 3263 -9 538 354 14 7 chr3 953610 953754 -217083404 + MER91A DNA MER1_type 51 195 -1 205 260 123 68 chr3 954266 954412 -217082746 + MER5A DNA MER1_type 35 188 -1 180 0 0 0 chr3 954930 954950 -217082208 + (TG)n Simple_repeat Simple_repeat 2 21 0 281 229 84 0 chr3 955290 955373 -217081785 + MIR SINE MIR 64 153 -109 21 57 0 0 chr3 955462 955497 -217081661 + AT_rich Low_complexity Low_complexity 1 35 0 25 31 0 0 chr3 955567 955599 -217081559 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 955632 955662 -217081496 + AT_rich Low_complexity Low_complexity 1 30 0 3736 195 36 13 chr3 955756 956609 -217080549 + L1MA4A LINE L1 1768 2640 -4209 2430 167 31 22 chr3 956612 957062 -217080096 + LTR22A LTR ERVK 5 458 0 6109 118 22 14 chr3 957064 957641 -217079517 + HERVK22 LTR ERVK 3 591 -6246 2706 26 0 0 chr3 957641 957948 -217079210 + AluYb8 SINE Alu 1 307 -11 6109 118 22 14 chr3 957948 958296 -217078862 + HERVK22 LTR ERVK 591 935 -5902 10475 122 4 1 chr3 958296 959792 -217077366 + HERVK22 LTR ERVK 2144 3644 -3193 12083 136 1 5 chr3 959798 961761 -217075397 + HERVK22 LTR ERVK 3188 6836 -1 2433 171 13 19 chr3 961762 962223 -217074935 + LTR22A LTR ERVK 1 458 0 7154 225 53 10 chr3 962223 966125 -217071033 + L1MA4A LINE L1 2635 6749 -256 * 7631 84 2 2 chr3 966121 967183 -217069975 + L1P LINE L1 1871 2932 -3214 1029 47 0 0 chr3 967171 967299 -217069859 - L1P LINE L1 -3101 3045 2918 * 370 138 51 0 chr3 967317 967393 -217069765 + L1MA4A LINE L1 6739 6822 -180 5172 168 10 29 chr3 967427 968821 -217068337 - L1P LINE L1 -4610 1536 8 27674 76 5 2 chr3 968876 973413 -217063745 + L1PA6 LINE L1 1608 6153 -1 186 133 0 0 chr3 973418 973448 -217063710 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 208 139 0 0 chr3 973468 973504 -217063654 + (A)n Simple_repeat Simple_repeat 1 36 0 378 356 67 0 chr3 973507 973687 -217063471 - MIR SINE MIR -2 260 69 212 286 189 51 chr3 974172 974347 -217062811 - L3 LINE CR1 -27 1550 1352 261 73 0 0 chr3 974646 974687 -217062471 - L1PA6 LINE L1 0 6154 6114 487 257 68 14 chr3 974691 974839 -217062319 - MIR3 SINE MIR -38 170 15 2043 181 42 44 chr3 975089 975517 -217061641 - MSTB LTR MaLR 0 415 1 2074 127 0 0 chr3 975599 975914 -217061244 - AluSx SINE Alu 0 315 1 2074 123 7 3 chr3 975921 976214 -217060944 - AluSc SINE Alu -13 296 3 227 281 206 7 chr3 977374 977520 -217059638 - MIR SINE MIR 0 262 88 22 0 0 0 chr3 977520 977542 -217059616 + AT_rich Low_complexity Low_complexity 1 22 0 441 327 42 0 chr3 977582 977747 -217059411 - MIR SINE MIR -71 191 20 344 259 88 57 chr3 978000 978160 -217058998 - L1ME3 LINE L1 -311 5855 5691 376 272 127 13 chr3 978219 978377 -217058781 + L2 LINE L2 3138 3313 0 515 318 24 16 chr3 978524 978776 -217058382 - L1ME3 LINE L1 -1301 4845 4592 24 32 0 0 chr3 979365 979396 -217057762 + AT_rich Low_complexity Low_complexity 1 31 0 20272 114 12 2 chr3 979605 981931 -217055227 + L1M3f LINE L1 1103 3878 -2450 336 64 0 0 chr3 981931 981978 -217055180 + (CAA)n Simple_repeat Simple_repeat 2 48 0 20272 114 12 2 chr3 981978 982765 -217054393 + L1M3f LINE L1 3878 4656 -1672 6689 73 7 2 chr3 982765 984376 -217052782 + L1PA7 LINE L1 4538 6151 -3 622 237 50 32 chr3 984612 984831 -217052327 + L1MC4 LINE L1 7807 8029 -13 302 186 34 0 chr3 984848 984907 -217052251 + AluJ/FLAM SINE Alu 25 85 -217 584 196 108 6 chr3 984926 985092 -217052066 + L1MC2 LINE L1 5961 6148 -226 1531 184 27 0 chr3 985092 985375 -217051783 - AluSx SINE Alu 0 304 15 1890 152 36 30 chr3 985533 985863 -217051295 - THE1B LTR MaLR -32 332 1 535 380 10 0 chr3 985908 986221 -217050937 + L1MC4a LINE L1 5513 5828 -1980 17228 170 32 15 chr3 986230 988977 -217048181 + L1M1 LINE L1 37 2974 -4591 2173 128 0 0 chr3 988977 989275 -217047883 + AluSg SINE Alu 2 299 -11 17228 170 32 15 chr3 989275 989744 -217047414 + L1M1 LINE L1 2974 3433 -4132 452 171 0 0 chr3 989749 989825 -217047333 - L1P LINE L1 -2546 3600 3525 259 290 63 50 chr3 991093 991213 -217045945 - MIR3 SINE MIR -9 199 78 184 295 21 32 chr3 991562 991657 -217045501 - L3b LINE CR1 -222 1361 1268 1131 158 34 49 chr3 991787 992053 -217045105 - L1MA1 LINE L1 -4 6298 6037 444 364 12 0 chr3 992829 992991 -217044167 - MIR3 SINE MIR 0 208 45 2486 196 50 0 chr3 993004 993701 -217043457 + L1PB2 LINE L1 551 1284 -4920 3038 175 40 3 chr3 993711 994318 -217042840 + L1PB2 LINE L1 1419 2047 -4157 1354 146 0 14 chr3 994320 994532 -217042626 - AluSq SINE Alu -16 297 89 12509 191 29 14 chr3 994537 996210 -217040948 + L1PB2 LINE L1 2096 3742 -2466 2028 164 86 5 chr3 996210 996606 -217040552 + MSTA LTR MaLR 1 428 0 12509 191 29 14 chr3 996606 998976 -217038182 + L1PB2 LINE L1 3742 6201 -7 21 36 0 0 chr3 998976 999004 -217038154 + AT_rich Low_complexity Low_complexity 1 28 0 2103 167 18 5 chr3 999014 999591 -217037567 + L1MA8 LINE L1 4981 5566 -725 2271 151 36 23 chr3 999594 1000032 -217037126 + MLT2A1 LTR ERVL 1 444 0 42177 91 5 6 chr3 1000032 1005689 -217031469 + HERVL-A1-A1 LTR ERVL 1 5654 0 2335 84 16 0 chr3 1005689 1005997 -217031161 + MLT2A1 LTR ERVL 1 313 -131 304 193 50 25 chr3 1005997 1006158 -217031000 + (TATAA)n Simple_repeat Simple_repeat 4 168 0 287 71 0 24 chr3 1006163 1006205 -217030953 + MLT2A1 LTR ERVL 411 451 -2 3476 159 53 9 chr3 1006205 1006898 -217030260 + L1MA8 LINE L1 5564 6287 -4 34 65 0 0 chr3 1007221 1007283 -217029875 + AT_rich Low_complexity Low_complexity 1 62 0 363 192 93 41 chr3 1007391 1007563 -217029595 - Charlie7 DNA MER1_type -28 2584 2404 2242 133 58 24 chr3 1007694 1008108 -217029050 + MSTA LTR MaLR 1 428 0 245 259 21 98 chr3 1008161 1008304 -217028854 - Charlie7 DNA MER1_type -2018 594 463 22 56 0 0 chr3 1008342 1008378 -217028780 + AT_rich Low_complexity Low_complexity 1 36 0 1292 294 48 53 chr3 1008533 1009614 -217027544 - L1ME3A LINE L1 -8 6162 5088 22690 188 14 28 chr3 1009633 1016249 -217020909 + L1PA10 LINE L1 10 6557 0 440 35 0 0 chr3 1017449 1017506 -217019652 + L1PA6 LINE L1 6093 6149 -5 229 291 8 30 chr3 1017517 1017651 -217019507 - L1ME3A LINE L1 -1053 5093 4963 511 178 51 0 chr3 1017680 1017798 -217019360 - L1MA8 LINE L1 -4 6287 6164 934 270 42 46 chr3 1017921 1018447 -217018711 - L1ME3A LINE L1 -1300 4846 4323 4312 243 74 16 chr3 1018451 1019114 -217018044 + L1ME3A LINE L1 2783 3406 -2740 2301 54 7 0 chr3 1019114 1019442 -217017716 + AluY SINE Alu 3 332 0 4312 243 74 16 chr3 1019442 1020277 -217016881 + L1ME3A LINE L1 3406 4369 -1777 21 82 0 0 chr3 1020484 1020533 -217016625 + AT_rich Low_complexity Low_complexity 1 49 0 1610 176 18 106 chr3 1020588 1021088 -217016070 + L1ME3A LINE L1 4369 4824 -1322 254 295 80 27 chr3 1021706 1021818 -217015340 - L2 LINE L2 -5 3267 3150 1462 206 49 25 chr3 1021953 1022361 -217014797 + L1ME3A LINE L1 4816 5233 -913 1335 266 85 33 chr3 1022356 1022991 -217014167 + HAL1 LINE L1 1840 2507 0 * 22 88 0 0 chr3 1023909 1023966 -217013192 + AT_rich Low_complexity Low_complexity 1 57 0 13495 220 38 19 chr3 1024001 1028152 -217009006 - L1MA5 LINE L1 -25 7337 3269 922 145 0 0 chr3 1028152 1028304 -217008854 - L1PA14 LINE L1 -1 6160 6009 13495 220 38 19 chr3 1028304 1029215 -217007943 - L1MA5 LINE L1 -4093 3269 2137 2027 155 0 0 chr3 1029215 1029506 -217007652 - AluSx SINE Alu -19 293 3 13495 220 38 19 chr3 1029506 1029905 -217007253 - L1MA5 LINE L1 -5225 2137 1747 230 218 36 0 chr3 1030216 1030271 -217006887 + L1M2 LINE L1 5499 5555 -742 * 783 257 87 10 chr3 1030241 1030550 -217006608 + L1ME3A LINE L1 5523 5855 -315 1661 52 0 0 chr3 1030705 1030915 -217006243 + L1PA3 LINE L1 5946 6155 0 439 289 15 22 chr3 1031337 1031472 -217005686 - MIR3 SINE MIR -33 175 42 3533 207 31 10 chr3 1032406 1033055 -217004103 - L1MA7 LINE L1 -10 6293 5558 2007 214 99 72 chr3 1033055 1033859 -217003299 + LTR1B LTR ERV1 1 826 0 3533 207 31 10 chr3 1033859 1034106 -217003052 - L1MA7 LINE L1 -745 5558 5318 441 282 24 32 chr3 1034106 1034230 -217002928 + L2 LINE L2 3146 3268 -4 263 420 13 21 chr3 1034398 1034634 -217002524 + L2 LINE L2 2825 3058 -214 301 319 80 11 chr3 1035041 1035229 -217001929 - L2 LINE L2 -873 2441 2241 751 224 29 24 chr3 1035597 1035767 -217001391 - FRAM SINE Alu -12 164 1 4201 125 0 2 chr3 1036312 1036952 -217000206 + L1MA3 LINE L1 5314 5952 -353 * 22742 172 26 61 chr3 1036930 1037852 -216999306 + L1PA10 LINE L1 1 954 -5214 4015 152 18 73 chr3 1037852 1038683 -216998475 + LTR1 LTR ERV1 1 785 0 22742 172 26 61 chr3 1038683 1038972 -216998186 + L1PA10 LINE L1 954 1252 -4916 206 0 69 0 chr3 1038972 1039001 -216998157 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22742 172 26 61 chr3 1039001 1044190 -216992968 + L1PA10 LINE L1 1252 6165 -3 2039 96 88 6 chr3 1044196 1044539 -216992619 + L1MA3 LINE L1 5935 6305 0 2047 113 10 3 chr3 1044541 1044832 -216992326 + AluSq SINE Alu 1 293 -20 230 198 0 86 chr3 1046554 1046635 -216990523 - L1MB1 LINE L1 -1 6188 6115 532 177 31 0 chr3 1046638 1046734 -216990424 - FLAM_A SINE Alu -41 101 3 25626 63 21 1 chr3 1047460 1053470 -216983688 + L1PA5 LINE L1 3 6143 -11 21 0 0 0 chr3 1053708 1053729 -216983429 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 1053758 1053781 -216983377 + AT_rich Low_complexity Low_complexity 1 23 0 577 146 0 176 chr3 1053810 1053975 -216983183 - AluJb SINE Alu -92 220 85 408 279 149 13 chr3 1054164 1054318 -216982840 + MIR SINE MIR 46 220 -42 25 0 0 0 chr3 1054328 1054353 -216982805 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 1055194 1055221 -216981937 + (A)n Simple_repeat Simple_repeat 1 27 0 2047 173 69 6 chr3 1055223 1055661 -216981497 - MER31A LTR ERV1 -12 531 3 236 100 25 0 chr3 1055860 1055900 -216981258 + (CA)n Simple_repeat Simple_repeat 2 42 0 224 231 31 0 chr3 1056156 1056221 -216980937 + (TTG)n Simple_repeat Simple_repeat 2 68 0 32 43 0 0 chr3 1056288 1056334 -216980824 + AT_rich Low_complexity Low_complexity 1 46 0 2283 101 6 20 chr3 1056402 1056748 -216980410 - L1PA13 LINE L1 -1 6162 5822 241 339 106 22 chr3 1057440 1057620 -216979538 - MIR SINE MIR -4 258 64 1523 195 41 21 chr3 1058630 1058678 -216978480 - MSTB2 LTR MaLR -112 345 299 2916 137 5 2 chr3 1058678 1059125 -216978033 - MER83 LTR ERV1 0 448 1 1523 195 41 21 chr3 1059125 1059414 -216977744 - MSTB2 LTR MaLR -158 299 1 246 95 0 0 chr3 1059995 1060037 -216977121 + (A)n Simple_repeat Simple_repeat 1 42 0 1052 323 89 19 chr3 1060111 1060582 -216976576 - L3 LINE CR1 -23 1554 1051 410 303 103 44 chr3 1060912 1061318 -216975840 + L2 LINE L2 2219 2648 -666 1820 161 16 3 chr3 1061366 1061671 -216975487 + MER1B DNA MER1_type 31 339 0 423 330 124 57 chr3 1061709 1062145 -216975013 + L2 LINE L2 2808 3272 0 360 236 73 16 chr3 1063557 1063680 -216973478 - MIR SINE MIR -28 234 105 291 54 0 0 chr3 1063912 1063949 -216973209 + (TC)n Simple_repeat Simple_repeat 1 37 0 237 132 0 0 chr3 1063948 1063986 -216973172 + (CA)n Simple_repeat Simple_repeat 1 38 0 * 1710 192 13 16 chr3 1064321 1064634 -216972524 + AluJo SINE Alu 1 312 0 1599 203 0 13 chr3 1064640 1064950 -216972208 + AluJb SINE Alu 3 308 -4 1632 209 6 16 chr3 1065339 1065654 -216971504 + AluJo SINE Alu 1 312 0 1684 197 0 13 chr3 1065658 1065968 -216971190 + AluJb SINE Alu 3 308 -4 8288 195 43 46 chr3 1066246 1066614 -216970544 - L1MB1 LINE L1 -1 6167 5799 1400 203 30 36 chr3 1066614 1066915 -216970243 - AluJo SINE Alu -3 299 1 8288 195 43 46 chr3 1066915 1068786 -216968372 - L1MB1 LINE L1 -369 5799 3929 1761 188 3 0 chr3 1068786 1069078 -216968080 - AluJb SINE Alu -13 299 7 8288 195 43 46 chr3 1069078 1070182 -216966976 - L1MB1 LINE L1 -2239 3929 2823 1123 222 45 70 chr3 1070244 1070612 -216966546 - L1MA9 LINE L1 -40 6272 5917 1697 171 29 6 chr3 1070612 1070927 -216966231 - L1PA15 LINE L1 -13 7590 7269 1123 222 45 70 chr3 1070927 1071026 -216966132 - L1MA9 LINE L1 -395 5917 5817 419 218 0 10 chr3 1071016 1071117 -216966041 - L1P LINE L1 -1981 4165 4066 * 10061 205 18 6 chr3 1071125 1074089 -216963069 - L1PA15 LINE L1 -347 7256 4253 2104 42 0 4 chr3 1074089 1074350 -216962808 - L1PA3 LINE L1 -1 6154 5895 364 339 32 22 chr3 1074854 1075167 -216961991 - L1PA15 LINE L1 -7259 322 7 528 196 20 34 chr3 1075175 1075323 -216961835 - L1MA9 LINE L1 -367 5945 5800 17786 133 24 38 chr3 1075335 1078796 -216958362 + L1P3 LINE L1 5 3450 -3011 6643 26 1 1 chr3 1078796 1079570 -216957588 + L1PA3 LINE L1 5373 6152 -3 17786 133 24 38 chr3 1079570 1080271 -216956887 + L1P3 LINE L1 3450 4159 -2302 2606 66 2 4 chr3 1080273 1080771 -216956387 - LTR7 LTR ERV1 -2 448 2 26253 54 1 2 chr3 1080772 1084237 -216952921 - HERVH LTR ERV1 0 7713 4252 13931 106 7 16 chr3 1084235 1086843 -216950315 - HERVH LTR ERV1 -1857 5234 1796 * 11732 36 3 1 chr3 1086847 1089044 -216948114 - L1PA3 LINE L1 -1 6154 3953 7247 47 23 0 chr3 1089044 1090026 -216947132 + L1PA3 LINE L1 2919 3923 -2223 4590 227 17 17 chr3 1090023 1090995 -216946163 - L1PA13 LINE L1 -3317 3480 2510 * 1203 46 0 0 chr3 1090995 1091147 -216946011 + L1PA4 LINE L1 6001 6152 -3 4590 227 17 17 chr3 1091147 1091669 -216945489 - L1PA13 LINE L1 -4287 2510 1972 1932 89 119 0 chr3 1091669 1091938 -216945220 - AluY SINE Alu 0 301 1 4590 227 17 17 chr3 1091938 1092380 -216944778 - L1PA13 LINE L1 -4825 1972 1532 909 124 103 0 chr3 1092922 1093067 -216944091 - THE1B LTR MaLR -204 160 1 836 121 0 48 chr3 1093954 1094145 -216943013 - L1PBa LINE L1 -3839 3023 2840 * 1015 131 16 0 chr3 1094143 1094326 -216942832 - L1MA6 LINE L1 -38 6262 6077 10071 25 7 0 chr3 1094389 1096346 -216940812 - L1PA5 LINE L1 -3 6151 4179 2747 238 33 23 chr3 1096346 1097196 -216939962 - L1 LINE L1 -896 5250 4410 1992 153 140 11 chr3 1097196 1097575 -216939583 - MSTA LTR MaLR 0 428 1 8608 168 10 31 chr3 1097577 1099187 -216937971 - MSTA-int LTR MaLR -2 1578 3 1650 164 144 31 chr3 1099191 1099574 -216937584 - MSTA LTR MaLR 0 428 3 2747 238 33 23 chr3 1099574 1099597 -216937561 - L1 LINE L1 -1738 4408 4360 793 270 18 32 chr3 1099619 1099960 -216937198 - L1MA9 LINE L1 -201 6111 5776 770 180 5 57 chr3 1100073 1100284 -216936874 + L1MA4A LINE L1 5848 6047 -256 * 24018 83 4 1 chr3 1100280 1104556 -216932602 + L1PA6 LINE L1 1871 6154 0 2932 48 19 3 chr3 1104562 1104938 -216932220 + L1PA6 LINE L1 5770 6151 -3 1193 136 14 0 chr3 1105001 1105221 -216931937 + L1MA6 LINE L1 6077 6299 -1 182 275 0 0 chr3 1105300 1105340 -216931818 - MIR SINE MIR -64 198 159 643 269 90 12 chr3 1105416 1105672 -216931486 - L2 LINE L2 -39 3274 2999 439 326 74 107 chr3 1105677 1106042 -216931116 - L2 LINE L2 -2 3270 2918 22 0 0 0 chr3 1106342 1106364 -216930794 + AT_rich Low_complexity Low_complexity 1 22 0 188 319 21 0 chr3 1106722 1106769 -216930389 - MIR SINE MIR -68 140 93 328 287 0 23 chr3 1106780 1106867 -216930291 - L2 LINE L2 0 3313 3229 * 537 320 90 21 chr3 1106856 1107190 -216929968 - L2 LINE L2 -1729 1585 1229 328 279 103 22 chr3 1107452 1107588 -216929570 + MIR SINE MIR 3 149 -113 7157 45 7 6 chr3 1107621 1109291 -216927867 - L1PA4 LINE L1 -1 6154 4458 539 222 9 0 chr3 1109322 1109430 -216927728 - MER81 DNA DNA -5 109 1 349 203 212 25 chr3 1109950 1110068 -216927090 + L1ME4a LINE L1 5968 6107 -14 445 276 178 6 chr3 1110189 1110352 -216926806 + MIR SINE MIR 8 198 -64 1708 196 0 20 chr3 1110353 1110654 -216926504 + AluJb SINE Alu 1 295 -17 250 271 146 10 chr3 1110677 1110773 -216926385 + MIR SINE MIR 45 153 -55 414 271 113 26 chr3 1110790 1110941 -216926217 + MIR3 SINE MIR 34 197 -11 204 324 0 14 chr3 1111275 1111346 -216925812 + MIR3 SINE MIR 115 184 -24 183 365 149 0 chr3 1111824 1111931 -216925227 + MIR SINE MIR 20 142 -66 4180 202 27 3 chr3 1112178 1113081 -216924077 - L1P LINE L1 -5206 940 17 23 33 0 0 chr3 1113607 1113637 -216923521 + AT_rich Low_complexity Low_complexity 1 30 0 611 223 19 38 chr3 1114955 1115166 -216921992 + L1MA9 LINE L1 6068 6274 -38 2306 107 3 0 chr3 1115195 1115495 -216921663 + AluSp SINE Alu 3 303 -10 3083 47 0 0 chr3 1115689 1116071 -216921087 - L1PA4 LINE L1 -3 6152 5771 2208 46 3 0 chr3 1116071 1116354 -216920804 + L1P2 LINE L1 5439 5722 -433 7263 165 34 45 chr3 1118954 1119159 -216917999 - L1M2 LINE L1 -743 5403 5197 1967 144 3 0 chr3 1119159 1119444 -216917714 - AluSx SINE Alu -26 286 1 7263 165 34 45 chr3 1119444 1120506 -216916652 - L1M2 LINE L1 -949 5197 4222 2346 95 0 0 chr3 1120506 1120810 -216916348 + AluY SINE Alu 1 304 -7 7263 165 34 45 chr3 1120810 1121327 -216915831 - L1M2 LINE L1 -1924 4222 3701 3473 46 14 0 chr3 1121434 1121872 -216915286 + L1PA3 LINE L1 5711 6154 -1 284 82 20 0 chr3 1121872 1121921 -216915237 + L1MA1 LINE L1 6250 6299 -3 884 186 0 0 chr3 1121939 1122106 -216915052 + L1PA16 LINE L1 5812 5978 -188 338 75 0 19 chr3 1122116 1122169 -216914989 - MLT2A2 LTR ERVL 0 453 402 231 195 26 13 chr3 1122180 1122257 -216914901 + (TA)n Simple_repeat Simple_repeat 1 78 0 327 270 11 11 chr3 1122260 1122349 -216914809 + L1MC4 LINE L1 6614 6702 -1340 1204 163 31 16 chr3 1122350 1122608 -216914550 - MLT2A1 LTR ERVL -182 262 1 2189 107 28 0 chr3 1122608 1122962 -216914196 - HERVL-A1-A1 LTR ERVL 0 5654 5291 * 35681 91 15 9 chr3 1122961 1128035 -216909123 - HERVL-A1-A1 LTR ERVL -550 5104 1 2570 113 57 7 chr3 1128035 1128080 -216909078 - MLT2A1 LTR ERVL 0 444 403 396 0 0 0 chr3 1128080 1128124 -216909034 + (CA)n Simple_repeat Simple_repeat 2 45 0 2570 113 57 7 chr3 1128124 1128501 -216908657 - MLT2A1 LTR ERVL -41 403 1 719 221 6 6 chr3 1128508 1128666 -216908492 + L1PA16 LINE L1 5993 6150 -16 1440 274 61 27 chr3 1128681 1129691 -216907467 - L1M1 LINE L1 -3909 3656 2660 3450 217 44 13 chr3 1129840 1131175 -216905983 - L1M2 LINE L1 -682 5630 4244 264 398 53 9 chr3 1131293 1131519 -216905639 + L1M2 LINE L1 976 1211 -6355 266 367 8 8 chr3 1131723 1131851 -216905307 + L1PA13 LINE L1 1441 1568 -5271 322 378 41 78 chr3 1132273 1132567 -216904591 + L1M2 LINE L1 1564 1846 -5720 249 284 91 0 chr3 1132570 1132658 -216904500 + L1PA13 LINE L1 1472 1567 -5282 * 3796 238 36 56 chr3 1132652 1133793 -216903365 + L1PA13 LINE L1 1346 2549 -4300 684 200 9 0 chr3 1133793 1133908 -216903250 + FLAM_C SINE Alu 1 116 -17 3796 238 36 56 chr3 1133908 1134410 -216902748 + L1PA13 LINE L1 2549 3059 -3790 6692 243 73 16 chr3 1134431 1136164 -216900994 + L1 LINE L1 3284 5197 -1652 2013 136 60 26 chr3 1136164 1136516 -216900642 + THE1B LTR MaLR 1 364 0 6692 243 73 16 chr3 1136516 1137204 -216899954 + L1 LINE L1 5197 5844 -1005 2037 191 20 4 chr3 1137313 1137763 -216899395 + L1M2 LINE L1 2073 2529 -5036 1834 46 8 0 chr3 1137760 1137999 -216899159 - L1P1 LINE L1 -2461 3685 3445 * 12630 51 6 1 chr3 1137997 1140001 -216897157 + L1P1 LINE L1 3660 5672 -483 2653 212 17 11 chr3 1140101 1140813 -216896345 - L1 LINE L1 -2522 3806 3091 13044 32 0 15 chr3 1140813 1143193 -216893965 - L1PA3 LINE L1 0 6155 3798 5124 52 1 0 chr3 1143193 1143889 -216893269 + L1PA3 LINE L1 3104 3800 -2346 2480 182 24 42 chr3 1143886 1144507 -216892651 - L1 LINE L1 -3227 3101 2492 * 965 147 86 6 chr3 1144508 1144671 -216892487 - AluSp SINE Alu 0 313 138 3784 228 36 28 chr3 1144672 1146113 -216891045 - L1 LINE L1 -3819 2509 1054 808 213 0 37 chr3 1146113 1146277 -216890881 + FRAM SINE Alu 1 150 -26 408 111 0 49 chr3 1146286 1146367 -216890791 - L1 LINE L1 -4276 1052 976 501 280 0 8 chr3 1146368 1146500 -216890658 - L1 LINE L1 -5020 308 178 1692 203 41 19 chr3 1146746 1147269 -216889889 + L1M2c LINE L1 1457 1985 -4734 754 177 23 57 chr3 1349215 1349390 -216687768 + L1MC2 LINE L1 6171 6339 -5 182 219 0 0 chr3 1349769 1349801 -216687357 + MIR SINE MIR 159 190 -72 331 324 19 9 chr3 1351225 1351330 -216685828 - MIR3 SINE MIR -14 194 89 536 297 60 6 chr3 1354446 1354628 -216682530 + MIR SINE MIR 22 213 -49 508 209 0 0 chr3 1355018 1355131 -216682027 - L1MA4A LINE L1 0 6279 6044 * 2132 141 34 44 chr3 1355121 1355532 -216681626 - L1MA4A LINE L1 -182 6121 5715 282 282 19 19 chr3 1356778 1356881 -216680277 - MIR SINE MIR -70 138 36 306 230 135 48 chr3 1357326 1357452 -216679706 - MER117 DNA MER1_type -60 137 1 321 260 114 16 chr3 1358912 1359035 -216678123 + MIR SINE MIR 15 149 -113 510 250 147 6 chr3 1359403 1359559 -216677599 + MER5A DNA MER1_type 9 186 -3 314 317 169 6 chr3 1360981 1361164 -216675994 + MIR SINE MIR 1 213 -49 4127 185 127 155 chr3 1361253 1362219 -216674939 + L1MC4 LINE L1 6340 7332 -710 1348 159 4 17 chr3 1362219 1362458 -216674700 + AluSq SINE Alu 1 236 -77 4127 185 127 155 chr3 1362458 1362891 -216674267 + L1MC4 LINE L1 7332 7926 -116 279 0 0 0 chr3 1362891 1362922 -216674236 + (TG)n Simple_repeat Simple_repeat 2 32 0 4127 185 127 155 chr3 1362922 1363036 -216674122 + L1MC4 LINE L1 7926 8042 0 510 307 42 16 chr3 1363298 1363487 -216673671 - MIR SINE MIR -22 240 47 298 308 183 23 chr3 1364997 1365260 -216671898 + L2 LINE L2 2661 2965 -349 240 304 14 0 chr3 1365416 1365485 -216671673 + L2 LINE L2 3195 3264 -8 1708 171 10 3 chr3 1366570 1366868 -216670290 + AluJo SINE Alu 1 300 -12 384 273 132 57 chr3 1366981 1367208 -216669950 - L1ME LINE L1 -331 5790 5547 524 251 134 67 chr3 1368090 1368313 -216668845 + MIR SINE MIR 24 261 -1 517 269 60 7 chr3 1368715 1368864 -216668294 + MIR3 SINE MIR 37 193 -15 342 184 87 0 chr3 1369248 1369351 -216667807 - L1ME4a LINE L1 -2 6119 6008 820 335 67 23 chr3 1369487 1369962 -216667196 - L1ME4a LINE L1 -307 5814 5319 487 262 48 12 chr3 1370529 1370700 -216666458 + MIR SINE MIR 10 184 -69 263 247 56 34 chr3 1370759 1370848 -216666310 + L2 LINE L2 3153 3243 -29 423 288 42 8 chr3 1371374 1371492 -216665666 - MIR SINE MIR -40 222 101 898 289 100 22 chr3 1373433 1373842 -216663316 + MLT1K LTR MaLR 144 584 -4 2043 106 3 13 chr3 1374736 1375038 -216662120 + AluSx SINE Alu 1 299 -13 1707 142 184 6 chr3 1375604 1375963 -216661195 + MSTA LTR MaLR 4 426 -2 1814 143 10 22 chr3 1376031 1376367 -216660791 - AluSx SINE Alu 0 332 1 537 252 41 0 chr3 1376671 1376818 -216660340 - MER103 DNA DNA -12 154 2 1946 141 0 20 chr3 1377099 1377426 -216659732 - AluSx SINE Alu 0 312 1 337 305 108 89 chr3 1378645 1378914 -216658244 + L2 LINE L2 2914 3187 -85 233 304 180 12 chr3 1379680 1379818 -216657340 - MIR SINE MIR -44 164 7 3565 199 36 26 chr3 1379819 1380750 -216656408 - L1ME1 LINE L1 -32 6134 5196 716 186 127 56 chr3 1380900 1381239 -216655919 + L1MC5 LINE L1 7565 7927 -34 223 309 0 37 chr3 1382103 1382184 -216654974 - MIR SINE MIR -100 108 31 491 329 7 0 chr3 1383335 1383472 -216653686 + MIR3 SINE MIR 30 167 -41 303 215 114 25 chr3 1385073 1385152 -216652006 - MIR3 SINE MIR -9 199 114 285 216 135 0 chr3 1385430 1385504 -216651654 + L1MC5 LINE L1 7808 7891 -70 2238 203 67 54 chr3 1385994 1386550 -216650608 + MLT1F1 LTR MaLR 1 563 -4 1809 190 103 38 chr3 1386559 1387033 -216650125 + MLT1D LTR MaLR 1 505 0 2015 146 33 9 chr3 1387296 1387625 -216649533 + MER1B DNA MER1_type 1 337 0 277 263 140 9 chr3 1388581 1388695 -216648463 - MIR3 SINE MIR -43 165 37 2225 110 0 0 chr3 1388990 1389300 -216647858 + AluSg SINE Alu 1 310 0 1862 123 6 43 chr3 1391171 1391495 -216645663 - AluSx SINE Alu 0 312 1 23 0 0 0 chr3 1391495 1391518 -216645640 + AT_rich Low_complexity Low_complexity 1 23 0 701 117 0 0 chr3 1391542 1391645 -216645513 - AluSg/x SINE Alu -2 310 208 751 237 72 10 chr3 1391729 1391923 -216645235 + MER3 DNA MER1_type 3 208 -1 378 327 31 25 chr3 1393088 1393247 -216643911 + MIR3 SINE MIR 36 195 -13 343 250 92 58 chr3 1393631 1393751 -216643407 + MIR SINE MIR 25 148 -114 1977 106 10 51 chr3 1393998 1394309 -216642849 - AluSx SINE Alu -14 298 1 22 0 0 0 chr3 1394319 1394341 -216642817 + AT_rich Low_complexity Low_complexity 1 22 0 366 302 82 80 chr3 1394344 1394908 -216642250 + L2 LINE L2 2702 3272 0 300 230 40 14 chr3 1396399 1396473 -216640685 - MER117 DNA MER1_type -78 119 44 392 241 66 99 chr3 1396800 1396918 -216640240 - MIR SINE MIR -6 256 147 1836 147 3 3 chr3 1396918 1397204 -216639954 - AluJb SINE Alu -23 289 4 392 241 66 99 chr3 1397204 1397297 -216639861 - MIR SINE MIR -115 147 52 630 262 126 19 chr3 1398676 1398890 -216638268 - MIR SINE MIR -12 250 14 441 39 0 0 chr3 1398983 1399035 -216638123 + MADE1 DNA Mariner 2 53 -27 413 57 0 0 chr3 1399206 1399259 -216637899 - MADE1 DNA Mariner -27 53 1 2032 99 31 7 chr3 1402699 1402991 -216634167 + AluSg SINE Alu 1 299 -11 570 279 132 6 chr3 1404621 1404905 -216632253 + L1MC4a LINE L1 5561 5805 -316 185 319 0 0 chr3 1406003 1406072 -216631086 + L2 LINE L2 3195 3263 -9 256 284 68 0 chr3 1407732 1407806 -216629352 + L2 LINE L2 3008 3086 -186 358 219 289 0 chr3 1409295 1409409 -216627749 + MIR SINE MIR 8 154 -108 187 209 0 0 chr3 1409570 1409613 -216627545 - L2 LINE L2 -1 3312 3270 2005 115 34 0 chr3 1409874 1410170 -216626988 + AluSx SINE Alu 6 311 -1 234 162 0 0 chr3 1410841 1410878 -216626280 + MIR SINE MIR 113 149 -59 289 247 39 13 chr3 1410969 1411046 -216626112 - MIR SINE MIR -28 234 156 * 741 288 14 9 chr3 1411044 1411259 -216625899 + MIR SINE MIR 5 220 -42 1205 168 72 50 chr3 1411262 1411524 -216625634 + AluJo SINE Alu 7 274 -38 262 271 0 0 chr3 1411548 1411607 -216625551 + MIR SINE MIR 204 262 0 918 155 94 75 chr3 1411637 1411850 -216625308 + MER20 DNA MER1_type 1 217 -2 207 0 0 0 chr3 1413981 1414004 -216623154 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 705 118 0 0 chr3 1414020 1414130 -216623028 + (TCCA)n Simple_repeat Simple_repeat 1 110 0 513 331 118 10 chr3 1414377 1414691 -216622467 + L2 LINE L2 2966 3313 0 4086 84 20 32 chr3 1415700 1416297 -216620861 - L1PA10 LINE L1 -3 6165 5576 357 339 0 0 chr3 1416310 1416419 -216620739 + MIR SINE MIR 7 115 -147 588 224 109 21 chr3 1416561 1416753 -216620405 + MIR SINE MIR 1 209 -53 252 186 0 34 chr3 1416839 1416898 -216620260 + FLAM_A SINE Alu 75 131 -2 2342 132 71 0 chr3 1417543 1417936 -216619222 + L1PA16 LINE L1 5741 6161 -5 519 217 32 106 chr3 1417936 1418057 -216619101 + L1ME2 LINE L1 5964 6066 -98 1804 194 77 58 chr3 1418057 1418553 -216618605 + MLT1D LTR MaLR 1 505 0 519 217 32 106 chr3 1418553 1418637 -216618521 + L1ME2 LINE L1 6066 6155 -9 229 277 11 96 chr3 1418857 1418951 -216618207 - MIR3 SINE MIR -41 167 79 403 163 12 12 chr3 1419494 1419574 -216617584 - MIR3 SINE MIR -47 161 82 471 298 7 28 chr3 1420208 1420349 -216616809 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 1421296 1421516 -216615642 - MIR SINE MIR -17 245 8 427 326 7 28 chr3 1421899 1422040 -216615118 + MIR3 SINE MIR 10 147 -61 2671 83 0 0 chr3 1422393 1422744 -216614414 + L1PA14 LINE L1 5811 6161 0 815 129 0 0 chr3 1423540 1423664 -216613494 + FLAM_C SINE Alu 11 134 -9 189 0 0 0 chr3 1423878 1423899 -216613259 + (A)n Simple_repeat Simple_repeat 1 21 0 240 289 72 40 chr3 1425108 1425260 -216611898 + MIR SINE MIR 72 228 -34 531 282 62 66 chr3 1425948 1426253 -216610905 + L2 LINE L2 2950 3253 -19 608 233 0 0 chr3 1426271 1426387 -216610771 + FLAM_A SINE Alu 1 116 -17 23 0 0 0 chr3 1426909 1426932 -216610226 + AT_rich Low_complexity Low_complexity 1 23 0 189 107 0 0 chr3 1428314 1428342 -216608816 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 412 195 114 57 chr3 1430837 1430960 -216606198 + MIR3 SINE MIR 10 139 -69 371 313 9 0 chr3 1431691 1431806 -216605352 + MIR SINE MIR 55 170 -92 203 304 11 76 chr3 1432253 1432345 -216604813 - MIR SINE MIR -19 243 158 216 267 78 43 chr3 1432353 1432469 -216604689 - L2 LINE L2 -3 3269 3150 184 222 44 0 chr3 1432867 1432912 -216604246 - L2 LINE L2 -667 2647 2601 259 341 12 0 chr3 1432959 1433044 -216604114 + MIR SINE MIR 8 93 -169 396 316 100 40 chr3 1433101 1433500 -216603658 - L2 LINE L2 -785 2529 2107 858 165 15 17 chr3 1433859 1434208 -216602950 + GA-rich Low_complexity Low_complexity 1 348 0 818 250 18 14 chr3 1434411 1434631 -216602527 - MER58A DNA MER1_type -3 221 1 2029 91 0 4 chr3 1434939 1435254 -216601904 + AluSx SINE Alu 7 320 0 185 105 0 53 chr3 1435878 1435916 -216601242 + (GGAAA)n Simple_repeat Simple_repeat 5 40 0 369 43 0 0 chr3 1436017 1436064 -216601094 + MADE1 DNA Mariner 34 80 0 31 0 0 0 chr3 1436278 1436309 -216600849 + AT_rich Low_complexity Low_complexity 1 31 0 764 174 0 0 chr3 1436312 1436433 -216600725 + FLAM_A SINE Alu 2 122 -11 408 247 33 60 chr3 1436745 1436895 -216600263 - MIR SINE MIR -89 173 28 1112 269 128 39 chr3 1438884 1439410 -216597748 + MLT1H1 LTR MaLR 1 548 -5 185 294 39 0 chr3 1439463 1439514 -216597644 + MIR SINE MIR 77 129 -133 473 178 0 0 chr3 1439533 1439606 -216597552 + MER2 DNA MER2_type 273 345 0 455 253 58 93 chr3 1440765 1440842 -216596316 - L1ME3 LINE L1 0 6162 6084 2074 132 21 6 chr3 1440842 1441175 -216595983 - L1PA13 LINE L1 0 6163 5826 455 253 58 93 chr3 1441175 1441322 -216595836 - L1ME3 LINE L1 -78 6084 5946 537 323 12 6 chr3 1442572 1442739 -216594419 + MER91A DNA MER1_type 2 169 -27 328 85 0 0 chr3 1442813 1442860 -216594298 + L1MB7 LINE L1 6130 6176 -8 311 259 0 0 chr3 1443407 1443465 -216593693 - L2 LINE L2 0 3272 3215 384 293 173 42 chr3 1443945 1444136 -216593022 - MIR SINE MIR -3 259 44 193 211 193 0 chr3 1444376 1444433 -216592725 - L2 LINE L2 -1 3271 3204 186 227 0 91 chr3 1444604 1444670 -216592488 + L2 LINE L2 2997 3056 -216 374 298 38 15 chr3 1445348 1445479 -216591679 + MIR SINE MIR 117 250 -12 436 241 20 79 chr3 1446589 1446792 -216590366 + L1MC5 LINE L1 7737 7927 -34 441 0 0 0 chr3 1448649 1448698 -216588460 + (CA)n Simple_repeat Simple_repeat 2 50 0 186 43 0 0 chr3 1448771 1448794 -216588364 + (CA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr3 1448829 1448853 -216588305 + (T)n Simple_repeat Simple_repeat 1 24 0 619 242 124 0 chr3 1449732 1449885 -216587273 - MIR SINE MIR -25 237 66 2150 76 0 10 chr3 1450330 1450619 -216586539 + L1MA1 LINE L1 6016 6301 -1 236 350 12 0 chr3 1450676 1450756 -216586402 + MIR SINE MIR 69 149 -113 289 235 41 20 chr3 1450840 1450938 -216586220 + L1ME3 LINE L1 5556 5655 -466 364 300 111 37 chr3 1451000 1451190 -216585968 + L1ME3 LINE L1 5796 5999 -122 1814 132 28 28 chr3 1451194 1451483 -216585675 + AluJo SINE Alu 1 289 -23 26 0 0 0 chr3 1451550 1451576 -216585582 + AT_rich Low_complexity Low_complexity 1 26 0 2123 126 7 0 chr3 1452740 1453033 -216584125 + AluSx SINE Alu 1 295 -17 21 57 0 0 chr3 1453085 1453120 -216584038 + AT_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr3 1455578 1455629 -216581529 + AT_rich Low_complexity Low_complexity 1 51 0 273 366 12 30 chr3 1455760 1455894 -216581264 + MIR3 SINE MIR 23 155 -53 2202 120 3 0 chr3 1455894 1456203 -216580955 - AluSx SINE Alu -2 310 1 273 366 12 30 chr3 1456203 1456232 -216580926 + MIR3 SINE MIR 155 183 -25 249 89 44 0 chr3 1457859 1457904 -216579254 - LTR66 LTR ERVL -170 440 394 258 56 0 0 chr3 1457926 1457962 -216579196 + (TA)n Simple_repeat Simple_repeat 2 37 0 303 272 132 0 chr3 1458842 1458956 -216578202 + L2 LINE L2 3144 3272 0 550 202 11 0 chr3 1458992 1459094 -216578064 + L1ME3 LINE L1 5998 6107 -55 260 283 22 43 chr3 1460438 1460530 -216576628 + MIR SINE MIR 40 129 -79 28 0 0 0 chr3 1463027 1463055 -216574103 + AT_rich Low_complexity Low_complexity 1 28 0 2333 94 0 0 chr3 1463213 1463499 -216573659 - AluSx SINE Alu -26 286 1 553 274 70 46 chr3 1463853 1464094 -216573064 + MIR SINE MIR 6 252 -10 207 0 0 0 chr3 1467881 1467904 -216569254 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2305 111 3 0 chr3 1468651 1468957 -216568201 - AluSx SINE Alu -5 307 1 240 35 0 0 chr3 1469200 1469229 -216567929 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 321 219 73 57 chr3 1469969 1470092 -216567066 + L1ME4a LINE L1 5986 6110 -11 315 203 106 57 chr3 1471559 1471682 -216565476 - MER113 DNA MER1_type? -175 346 218 197 290 17 137 chr3 1471710 1472010 -216565148 + L2 LINE L2 2963 3226 -46 260 294 0 0 chr3 1472120 1472188 -216564970 - MIR SINE MIR 0 262 195 1571 246 86 21 chr3 1472189 1472626 -216564532 + MLT1G1 LTR MaLR 13 436 -106 692 201 71 33 chr3 1472700 1472884 -216564274 - MIR SINE MIR -59 203 13 243 223 134 45 chr3 1473006 1473118 -216564040 - MER113 DNA MER1_type? -182 339 218 2056 211 2 29 chr3 1474209 1474654 -216562504 + L1MD3 LINE L1 7554 7986 -9 1372 162 81 56 chr3 1475319 1475460 -216561698 - L1PA16 LINE L1 0 6166 6030 2422 77 3 0 chr3 1475460 1475757 -216561401 - AluSp SINE Alu -15 298 1 1372 162 81 56 chr3 1475757 1475899 -216561259 - L1PA16 LINE L1 -136 6030 5876 345 198 146 0 chr3 1476578 1476674 -216560484 + MER103 DNA DNA 6 115 -51 196 347 0 32 chr3 1476755 1476850 -216560308 + MIR3 SINE MIR 10 101 -107 508 260 68 40 chr3 1477318 1477495 -216559663 + MIR3 SINE MIR 14 195 -13 21 57 0 0 chr3 1478003 1478038 -216559120 + AT_rich Low_complexity Low_complexity 1 35 0 215 327 114 27 chr3 1478066 1478286 -216558872 - MIR SINE MIR -4 258 20 282 275 99 0 chr3 1478518 1478609 -216558549 - MIR SINE MIR -21 241 142 2375 132 31 14 chr3 1478820 1479177 -216557981 + THE1B LTR MaLR 2 364 0 215 291 104 97 chr3 1479456 1479590 -216557568 - L2 LINE L2 0 3272 3138 257 258 0 15 chr3 1479596 1479662 -216557496 - MIR SINE MIR -8 254 190 1924 152 0 26 chr3 1480519 1480821 -216556337 - AluSx SINE Alu -18 294 1 736 243 77 0 chr3 1481231 1481400 -216555758 + MER58A DNA MER1_type 27 208 -16 242 262 16 0 chr3 1481640 1481701 -216555457 + HsTC2 DNA Tc2 13 74 -1824 2265 132 0 0 chr3 1482138 1482442 -216554716 + AluSx SINE Alu 1 304 -8 342 0 0 0 chr3 1482536 1482574 -216554584 + (CA)n Simple_repeat Simple_repeat 2 39 0 303 250 214 31 chr3 1482897 1483093 -216554065 + L1ME3 LINE L1 5010 5241 -905 527 277 98 94 chr3 1483144 1483280 -216553878 + L1ME3 LINE L1 5317 5451 -719 2437 179 37 16 chr3 1483280 1483789 -216553369 + L1MB8 LINE L1 5658 6177 -1 527 277 98 94 chr3 1483789 1484503 -216552655 + L1ME3 LINE L1 5451 6170 0 442 269 31 8 chr3 1484567 1484697 -216552461 + L1MC4a LINE L1 5396 5528 -2280 393 275 123 34 chr3 1484780 1485016 -216552142 + L1MC4a LINE L1 5779 6035 -1773 1823 173 49 0 chr3 1485088 1485418 -216551740 + MER7A DNA MER2_type 3 346 0 266 206 32 58 chr3 1485444 1485599 -216551559 + (TATAA)n Simple_repeat Simple_repeat 4 154 0 2236 101 3 13 chr3 1486753 1487051 -216550107 - AluSp SINE Alu -18 295 1 495 331 18 0 chr3 1487384 1487553 -216549605 + MIR SINE MIR 89 260 -2 210 323 21 0 chr3 1487561 1487657 -216549501 - MIR SINE MIR -65 197 100 1653 147 45 18 chr3 1487727 1488013 -216549145 - AluJo SINE Alu -11 301 8 1399 234 113 63 chr3 1488917 1489604 -216547554 - L1ME3 LINE L1 0 6162 5275 2093 134 7 0 chr3 1489604 1489895 -216547263 - AluSx SINE Alu -19 293 1 1399 234 113 63 chr3 1489895 1490246 -216546912 - L1ME3 LINE L1 -887 5275 4943 1259 169 49 4 chr3 1490282 1490507 -216546651 - MER46A DNA MER2_type 0 236 2 504 325 35 4 chr3 1490579 1490810 -216546348 + L1MC4a LINE L1 5683 5920 -1888 634 164 102 8 chr3 1491707 1491835 -216545323 + FLAM_C SINE Alu 2 141 -2 205 159 91 0 chr3 1492058 1492102 -216545056 + MIR SINE MIR 104 151 -111 660 297 14 5 chr3 1492361 1492573 -216544585 + MIR SINE MIR 8 221 -41 501 248 55 3 chr3 1492613 1492807 -216544351 - MER58 DNA MER1_type -2 2418 1 397 283 29 35 chr3 1493715 1493888 -216543270 + MIR SINE MIR 79 250 -12 234 259 71 0 chr3 1493977 1494062 -216543096 + MIR SINE MIR 103 193 -69 229 309 37 0 chr3 1495336 1495417 -216541741 - MIR SINE MIR -176 86 3 719 215 0 0 chr3 1496861 1496982 -216540176 - FLAM_A SINE Alu -12 121 1 468 259 105 49 chr3 1497404 1497843 -216539315 + MLT1H1 LTR MaLR 48 542 -13 306 0 0 0 chr3 1498231 1498265 -216538893 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 33 0 0 chr3 1498267 1498297 -216538861 + (TC)n Simple_repeat Simple_repeat 1 30 0 2724 179 24 12 chr3 1500145 1500647 -216536511 + MLT2B2 LTR ERVL 1 508 -7 195 330 174 0 chr3 1501307 1501416 -216535742 + L2 LINE L2 3184 3311 -2 180 125 0 0 chr3 1501570 1501602 -216535556 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 466 274 42 42 chr3 1502001 1502308 -216534850 + L2 LINE L2 1534 1840 -1474 836 278 107 41 chr3 1502311 1502703 -216534455 + L2 LINE L2 2895 3312 -1 1687 197 0 16 chr3 1503521 1503830 -216533328 - AluJo SINE Alu -8 304 1 237 191 59 29 chr3 1503911 1503979 -216533179 + MIR SINE MIR 80 149 -113 256 263 0 85 chr3 1504398 1504516 -216532642 + L1MC5 LINE L1 7806 7913 -48 412 264 175 41 chr3 1505730 1505976 -216531182 + L2 LINE L2 3033 3311 -2 2319 76 0 14 chr3 1506008 1506321 -216530837 + AluY SINE Alu 1 311 0 354 273 124 36 chr3 1506866 1507060 -216530098 + Tigger8 DNA MER2_type 57 267 -399 433 278 124 27 chr3 1507467 1507766 -216529392 + L1ME LINE L1 5372 5699 -471 30 0 0 0 chr3 1508120 1508150 -216529008 + AT_rich Low_complexity Low_complexity 1 30 0 608 253 104 0 chr3 1508367 1508549 -216528609 + L1MC4 LINE L1 6519 6719 -1323 327 300 92 0 chr3 1508560 1508680 -216528478 - MIR SINE MIR -96 166 36 1013 198 23 14 chr3 1509326 1509543 -216527615 + MER20 DNA MER1_type 1 219 0 296 259 69 17 chr3 1510638 1510754 -216526404 + MIR SINE MIR 91 212 -50 1797 108 116 0 chr3 1511346 1511604 -216525554 + AluSg SINE Alu 1 288 -22 222 274 0 0 chr3 1512809 1512860 -216524298 - MIR SINE MIR -17 245 195 1559 248 86 21 chr3 1512861 1513298 -216523860 + MLT1G1 LTR MaLR 13 436 -106 650 186 68 37 chr3 1513372 1513533 -216523625 - MIR SINE MIR -59 203 38 554 225 23 0 chr3 1513660 1513833 -216523325 + GA-rich Low_complexity Low_complexity 4 180 0 351 0 0 0 chr3 1515569 1515608 -216521550 + (TA)n Simple_repeat Simple_repeat 2 40 0 2243 110 7 7 chr3 1515629 1515939 -216521219 - AluSx SINE Alu 0 312 3 930 198 35 30 chr3 1515939 1516136 -216521022 - MER20 DNA MER1_type -18 201 4 215 206 16 48 chr3 1516358 1516421 -216520737 - MER5B DNA MER1_type -2 176 116 3851 151 23 33 chr3 1516474 1517205 -216519953 + LTR8A LTR ERV1 1 724 -3 301 307 0 0 chr3 1517242 1517330 -216519828 - MER5A DNA MER1_type -101 88 1 447 146 361 8 chr3 1517357 1517487 -216519671 - MER5A DNA MER1_type 0 189 14 2817 100 41 30 chr3 1517813 1518273 -216518885 + MER4C LTR ERV1 1 465 0 1123 230 125 71 chr3 1518925 1519409 -216517749 - L1MC4 LINE L1 -2 8040 7513 1737 122 68 32 chr3 1519409 1519688 -216517470 + AluSg SINE Alu 1 289 -21 1123 230 125 71 chr3 1519688 1519825 -216517333 - L1MC4 LINE L1 -529 7513 7385 2665 127 39 18 chr3 1520506 1520948 -216516210 + L1PA16 LINE L1 5335 5785 -381 2170 105 0 3 chr3 1520948 1521242 -216515916 + AluSc SINE Alu 17 309 0 1037 96 32 26 chr3 1521275 1521431 -216515727 + L1PA16 LINE L1 6010 6166 0 4302 185 42 34 chr3 1521649 1522109 -216515049 - L1MB7 LINE L1 -16 6168 5713 1634 179 7 30 chr3 1522109 1522405 -216514753 - AluJb SINE Alu -7 305 17 4302 185 42 34 chr3 1522405 1523143 -216514015 - L1MB7 LINE L1 -471 5713 4959 1923 125 68 0 chr3 1523143 1523422 -216513736 - AluJb SINE Alu -14 298 1 4302 185 42 34 chr3 1523422 1523558 -216513600 - L1MB7 LINE L1 -1225 4959 4825 267 93 0 0 chr3 1524131 1524174 -216512984 + (CA)n Simple_repeat Simple_repeat 2 44 0 589 281 50 43 chr3 1524490 1524793 -216512365 + L1ME1 LINE L1 5809 6113 -53 811 294 37 25 chr3 1525051 1525374 -216511784 - MER102b DNA MER1_type -6 335 9 294 326 7 15 chr3 1525396 1525531 -216511627 + MIR SINE MIR 56 189 -73 215 301 137 0 chr3 1525657 1525730 -216511428 + L3 LINE CR1 1026 1108 -469 321 120 67 53 chr3 1525886 1525961 -216511197 + MER103 DNA DNA 15 90 -76 1972 147 0 7 chr3 1526029 1526321 -216510837 - AluJb SINE Alu -22 290 1 534 306 17 69 chr3 1527348 1527636 -216509522 + Charlie8 DNA MER1_type 1 273 -2144 209 264 92 0 chr3 1528804 1528891 -216508267 + L2 LINE L2 1854 1948 -1366 974 252 58 13 chr3 1529109 1529434 -216507724 + MSTA LTR MaLR 1 428 0 374 280 99 33 chr3 1529450 1529632 -216507526 - MIR SINE MIR -66 196 3 680 249 103 80 chr3 1529688 1530119 -216507039 + MLT1J LTR MaLR 1 441 -70 764 278 48 44 chr3 1530119 1530389 -216506769 - LTR16A1 LTR ERVL 0 457 187 511 284 116 71 chr3 1531581 1532045 -216505113 + MLT1K LTR MaLR 5 489 -99 5934 73 11 14 chr3 1533050 1533844 -216503314 + L1PA14 LINE L1 5369 6160 -1 566 181 124 0 chr3 1533864 1534055 -216503103 + FLAM_A SINE Alu 1 204 0 945 292 41 62 chr3 1534175 1534641 -216502517 - L2 LINE L2 -2 3311 2856 244 262 16 0 chr3 1534710 1534771 -216502387 - MER5B DNA MER1_type -66 112 51 230 257 18 62 chr3 1534910 1535023 -216502135 - L2 LINE L2 -608 2706 2599 355 259 18 36 chr3 1535052 1535164 -216501994 - MER5A DNA MER1_type -63 126 17 584 238 130 11 chr3 1535180 1535365 -216501793 - MER112 DNA MER1_type 0 260 54 675 175 9 0 chr3 1535407 1535521 -216501637 - FLAM_A SINE Alu -18 115 1 962 303 98 18 chr3 1535587 1536138 -216501020 - L2 LINE L2 -718 2596 2002 2203 114 10 0 chr3 1536993 1537292 -216499866 + AluSx SINE Alu 1 302 -10 308 209 15 0 chr3 1537305 1537372 -216499786 + MER5A DNA MER1_type 26 93 -96 252 308 158 0 chr3 1537467 1537600 -216499558 - MER5B DNA MER1_type -24 154 1 711 163 163 0 chr3 1538084 1538225 -216498933 + L1PA16 LINE L1 5876 6039 -127 2207 92 14 0 chr3 1538226 1538509 -216498649 + AluSx SINE Alu 1 287 -25 1896 82 58 0 chr3 1538808 1539051 -216498107 + AluSp SINE Alu 1 257 -56 219 125 0 0 chr3 1539053 1539093 -216498065 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 2347 69 0 16 chr3 1539310 1539613 -216497545 + AluY SINE Alu 1 298 -13 334 261 98 83 chr3 1539644 1539908 -216497250 + L1ME LINE L1 5559 5680 -441 2077 103 0 15 chr3 1539912 1540184 -216496974 + AluSq SINE Alu 1 268 -45 1731 158 14 11 chr3 1540455 1540740 -216496418 + AluJb SINE Alu 13 298 -14 2257 105 7 3 chr3 1541719 1542025 -216495133 + AluSc SINE Alu 1 307 -2 693 270 60 36 chr3 1542265 1542598 -216494560 + MER102b DNA MER1_type 1 341 0 422 360 23 6 chr3 1542821 1542993 -216494165 + MER20B DNA MER1_type 55 229 -554 699 186 8 8 chr3 1543004 1543128 -216494030 + AluJb SINE Alu 137 260 -52 453 294 5 33 chr3 1543130 1543314 -216493844 + MER20B DNA MER1_type 232 410 -373 4348 127 78 45 chr3 1543320 1544068 -216493090 - Ricksha DNA DNA -7 3239 2457 2048 113 3 7 chr3 1544068 1544393 -216492765 + AluSx SINE Alu 1 324 0 4348 127 78 45 chr3 1544393 1544505 -216492653 - Ricksha DNA DNA -789 2457 2350 544 187 19 0 chr3 1544532 1544639 -216492519 - Ricksha DNA DNA -1927 119 11 720 237 179 24 chr3 1544646 1544975 -216492183 + MER20B DNA MER1_type 398 777 -6 701 304 77 23 chr3 1545336 1545727 -216491431 - L2 LINE L2 0 3313 2902 290 0 75 0 chr3 1545727 1545767 -216491391 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 229 331 0 32 chr3 1546158 1546282 -216490876 - L2 LINE L2 -15 3257 3138 203 288 38 0 chr3 1546463 1546543 -216490615 - MIR SINE MIR -114 148 66 808 298 25 0 chr3 1546588 1546830 -216490328 - MIR SINE MIR -2 260 13 1318 144 9 5 chr3 1547463 1547678 -216489480 - AluSg/x SINE Alu -2 310 95 2085 130 0 7 chr3 1547834 1548127 -216489031 + AluSx SINE Alu 1 291 -21 860 248 148 18 chr3 1548252 1548643 -216488515 + Charlie7 DNA MER1_type 275 716 -1896 225 0 0 0 chr3 1548745 1548770 -216488388 + (CA)n Simple_repeat Simple_repeat 2 26 0 954 131 15 0 chr3 1548794 1548931 -216488227 - FAM SINE Alu -15 170 32 2556 60 0 3 chr3 1549098 1549400 -216487758 + AluY SINE Alu 1 301 -10 2414 89 0 3 chr3 1550261 1550563 -216486595 - AluSx SINE Alu -6 306 6 264 243 126 9 chr3 1552007 1552118 -216485040 + L2 LINE L2 3188 3311 -2 2068 89 33 0 chr3 1552242 1552537 -216484621 + AluSc SINE Alu 1 304 0 2448 82 0 3 chr3 1552542 1552845 -216484313 + AluSc SINE Alu 1 302 -7 409 328 95 25 chr3 1552845 1553400 -216483758 - L2 LINE L2 -25 3288 2695 2433 126 67 12 chr3 1553417 1553823 -216483335 + MSTA LTR MaLR 1 428 0 296 248 33 74 chr3 1553835 1553964 -216483194 - L2 LINE L2 -904 2410 2287 180 0 0 0 chr3 1554254 1554274 -216482884 + (A)n Simple_repeat Simple_repeat 1 20 0 412 309 129 36 chr3 1554433 1554821 -216482337 + HAL1 LINE L1 239 662 -1845 359 280 40 30 chr3 1554821 1554921 -216482237 + MER58 DNA MER1_type 13 113 -228 813 168 4 0 chr3 1555095 1555342 -216481816 + GA-rich Low_complexity Low_complexity 1 248 0 231 234 9 27 chr3 1555356 1555467 -216481691 + G-rich Low_complexity Low_complexity 3 111 0 1392 266 133 61 chr3 1555482 1556727 -216480431 + HAL1 LINE L1 1123 2465 -42 1038 137 28 11 chr3 1556727 1556909 -216480249 - L1MB5 LINE L1 -9 6165 5981 1392 266 133 61 chr3 1556909 1556949 -216480209 + HAL1 LINE L1 2465 2501 -6 1568 205 0 16 chr3 1556950 1557253 -216479905 - AluJb SINE Alu -14 298 1 1162 204 25 116 chr3 1557346 1557744 -216479414 + MLT1A1 LTR MaLR 4 365 0 326 273 78 19 chr3 1558014 1558168 -216478990 - MLT1J2 LTR MaLR -287 163 1 194 310 35 0 chr3 1558638 1558696 -216478462 + L2 LINE L2 3190 3249 -64 2383 97 3 3 chr3 1559278 1559589 -216477569 + AluSq SINE Alu 1 311 -2 416 208 40 94 chr3 1559867 1560016 -216477142 + LTR67 LTR ERVL 413 553 -4 559 329 27 4 chr3 1560332 1560557 -216476601 + MIR SINE MIR 32 261 -1 258 200 154 0 chr3 1560608 1560673 -216476485 + L1ME3 LINE L1 5795 5869 -293 1097 171 0 0 chr3 1560673 1560843 -216476315 - AluJb SINE Alu -14 298 129 825 225 56 70 chr3 1560848 1561174 -216475984 + L1ME3 LINE L1 5858 6164 -2 670 102 0 10 chr3 1561506 1561604 -216475554 + MER4A LTR ERV1 2 98 -566 2923 103 2 10 chr3 1561604 1562011 -216475147 + MER4A LTR ERV1 261 664 0 2179 119 0 0 chr3 1562046 1562348 -216474810 - AluSx SINE Alu -8 304 3 1739 153 14 21 chr3 1562474 1562761 -216474397 - AluJo SINE Alu -27 285 1 1851 176 0 3 chr3 1563006 1563308 -216473850 + AluJb SINE Alu 1 301 -11 855 152 0 0 chr3 1563358 1563490 -216473668 - AluSg/x SINE Alu -6 304 173 990 106 0 14 chr3 1563644 1563785 -216473373 - AluJo SINE Alu -157 155 17 371 319 71 18 chr3 1563787 1563956 -216473202 + MIR SINE MIR 84 261 -1 285 344 75 0 chr3 1564138 1564298 -216472860 - MIR SINE MIR -71 191 20 21 0 0 0 chr3 1564565 1564586 -216472572 + AT_rich Low_complexity Low_complexity 1 21 0 408 336 0 7 chr3 1564728 1564868 -216472290 + MIR3 SINE MIR 21 159 -49 188 227 23 0 chr3 1564883 1564927 -216472231 - L2 LINE L2 -15 3257 3213 308 265 219 20 chr3 1565520 1565826 -216471332 - L1MEc LINE L1 -4759 1687 1301 2288 107 0 0 chr3 1565830 1566121 -216471037 - AluSc SINE Alu -18 291 1 757 277 98 33 chr3 1566130 1566650 -216470508 - L1MEc LINE L1 -5029 1387 834 1056 150 48 0 chr3 1567324 1567491 -216469667 + FRAM SINE Alu 2 176 0 256 23 0 47 chr3 1567631 1567674 -216469484 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1639 102 0 0 chr3 1567737 1567942 -216469216 - AluSx SINE Alu -107 205 1 526 301 116 39 chr3 1567950 1568338 -216468820 - MLT1L LTR MaLR -3 612 195 1363 208 17 24 chr3 1569000 1569294 -216467864 - AluJo SINE Alu -9 293 2 938 92 8 0 chr3 1569294 1569413 -216467745 - AluJo SINE Alu -176 136 17 336 175 0 0 chr3 1571379 1571442 -216465716 + CT-rich Low_complexity Low_complexity 1 63 0 1513 176 0 22 chr3 1572545 1572812 -216464346 + AluJo SINE Alu 49 309 -3 2695 158 85 81 chr3 1573993 1574626 -216462532 - MER21B LTR ERV1 0 863 228 2221 115 3 10 chr3 1574727 1575031 -216462127 + AluSx SINE Alu 2 303 -9 240 197 45 45 chr3 1575298 1575364 -216461794 + MIR SINE MIR 112 177 -85 601 148 101 177 chr3 1575445 1575682 -216461476 + MER20 DNA MER1_type 1 219 0 258 329 71 14 chr3 1575866 1576006 -216461152 + MIR3 SINE MIR 21 168 -40 2114 137 3 0 chr3 1577118 1577417 -216459741 - AluSx SINE Alu -12 300 1 341 231 44 0 chr3 1577996 1578087 -216459071 - MIR SINE MIR -72 190 96 887 290 78 38 chr3 1578089 1578610 -216458548 + L2 LINE L2 2748 3296 -17 1764 194 61 33 chr3 1578785 1579243 -216457915 - Charlie1b DNA MER1_type 0 523 53 198 0 0 0 chr3 1580380 1580402 -216456756 + (T)n Simple_repeat Simple_repeat 1 22 0 576 314 8 47 chr3 1581010 1581243 -216455915 - MIR SINE MIR -35 227 5 1818 165 3 20 chr3 1581437 1581734 -216455424 + AluJb SINE Alu 3 294 -18 734 288 129 39 chr3 1581780 1582477 -216454681 - L2 LINE L2 -7 3265 2494 491 292 29 95 chr3 1582484 1582864 -216454294 - L2 LINE L2 0 3272 2918 672 330 9 0 chr3 1583481 1583708 -216453450 - MIR SINE MIR -24 238 10 1243 188 111 30 chr3 1583918 1584189 -216452969 - AluJo SINE Alu -17 295 3 237 316 26 0 chr3 1584275 1584351 -216452807 + L3 LINE CR1 1499 1576 -1 356 278 90 0 chr3 1584602 1584746 -216452412 - MIR SINE MIR 0 262 106 270 215 96 44 chr3 1585547 1585682 -216451476 - L1ME4a LINE L1 0 6121 5980 2050 141 0 3 chr3 1585729 1586026 -216451132 + AluSx SINE Alu 1 296 -16 523 284 41 50 chr3 1586036 1586254 -216450904 + MIR SINE MIR 47 262 0 185 380 133 0 chr3 1587637 1587750 -216449408 + MIR3 SINE MIR 44 171 -37 1455 165 51 0 chr3 1588373 1588610 -216448548 + AluSx SINE Alu 36 284 -28 249 108 0 0 chr3 1588610 1588647 -216448511 + (CA)n Simple_repeat Simple_repeat 2 38 0 764 256 59 35 chr3 1588700 1589075 -216448083 + L1M4 LINE L1 2114 2497 -3649 2187 142 87 25 chr3 1589232 1589633 -216447525 - MSTC LTR MaLR -2 426 1 368 195 73 0 chr3 1589635 1589717 -216447441 - L1ME1 LINE L1 -50 6116 6029 459 252 57 69 chr3 1589747 1590167 -216446991 + L1M4 LINE L1 2616 3030 -3116 * 6386 82 28 8 chr3 1590165 1591033 -216446125 - L1PA10 LINE L1 -8 6160 5276 397 273 71 24 chr3 1591033 1591330 -216445828 + L1M4 LINE L1 2982 3292 -2854 1845 186 169 2 chr3 1591344 1591769 -216445389 - MLT1D LTR MaLR -9 496 1 607 278 87 20 chr3 1591814 1592113 -216445045 + L1M4 LINE L1 3371 3689 -2457 2574 57 0 16 chr3 1593469 1593785 -216443373 + AluY SINE Alu 1 311 0 1298 149 36 5 chr3 1594881 1595102 -216442056 + L1PB4 LINE L1 5929 6156 0 731 264 60 16 chr3 1595666 1595916 -216441242 - MIR SINE MIR -1 261 1 320 254 150 68 chr3 1596219 1596499 -216440659 - L3 LINE CR1 -42 1535 1233 2014 149 0 19 chr3 1596546 1596862 -216440296 + AluJb SINE Alu 1 310 -2 225 301 243 0 chr3 1596862 1596965 -216440193 + MER5A DNA MER1_type 62 189 0 264 278 213 0 chr3 1596980 1597088 -216440070 - L2 LINE L2 -1 3271 3141 839 287 5 0 chr3 1597145 1597361 -216439797 - MIR SINE MIR -22 240 24 425 278 79 90 chr3 1597394 1597872 -216439286 - L2 LINE L2 -219 3053 2591 227 209 30 15 chr3 1598102 1598169 -216438989 + MIR SINE MIR 105 172 -90 198 0 0 0 chr3 1598421 1598443 -216438715 + (TTG)n Simple_repeat Simple_repeat 1 22 0 1786 148 11 0 chr3 1598444 1598715 -216438443 - AluJo SINE Alu -38 274 1 745 224 56 5 chr3 1599198 1599394 -216437764 + MIR SINE MIR 2 207 -55 348 284 123 0 chr3 1600981 1601136 -216436022 - MIR3 SINE MIR -15 193 20 1577 178 11 3 chr3 1601742 1602029 -216435129 + AluJo SINE Alu 1 289 -23 213 254 0 18 chr3 1602390 1602445 -216434713 + L2 LINE L2 3217 3270 -2 400 264 92 12 chr3 1602472 1602635 -216434523 + MIR SINE MIR 86 261 -1 264 373 156 0 chr3 1603889 1604078 -216433080 - MIR SINE MIR -2 260 46 209 212 0 0 chr3 1604281 1604314 -216432844 - L2 LINE L2 -39 3233 3201 658 300 39 26 chr3 1604330 1604560 -216432598 - MIR SINE MIR -18 244 12 261 0 0 0 chr3 1604990 1605019 -216432139 + (A)n Simple_repeat Simple_repeat 1 29 0 2785 127 59 7 chr3 1605570 1606010 -216431148 + L1MA8 LINE L1 5829 6291 0 772 196 124 0 chr3 1606270 1606423 -216430735 + MER5B DNA MER1_type 4 175 -3 217 191 0 0 chr3 1606520 1606562 -216430596 + MIR SINE MIR 189 230 -32 23 0 0 0 chr3 1607123 1607146 -216430012 + AT_rich Low_complexity Low_complexity 1 23 0 273 247 27 55 chr3 1607186 1607259 -216429899 + MER5B DNA MER1_type 107 177 -1 1786 154 0 62 chr3 1607424 1607749 -216429409 - AluJb SINE Alu -7 305 1 328 241 12 36 chr3 1609066 1609149 -216428009 - MIR SINE MIR -121 141 61 2279 106 0 0 chr3 1609793 1610094 -216427064 + AluSc SINE Alu 1 301 -8 349 324 20 0 chr3 1610173 1610275 -216426883 + MIR3 SINE MIR 66 169 -39 697 148 0 113 chr3 1610387 1610529 -216426629 - FLAM_A SINE Alu -7 126 1 469 300 40 40 chr3 1611171 1611414 -216425744 + MIR SINE MIR 3 243 -19 3062 71 8 0 chr3 1612924 1613302 -216423856 + L1PA7 LINE L1 5774 6154 0 2342 116 0 0 chr3 1613336 1613647 -216423511 + AluSx SINE Alu 1 311 -1 186 43 0 0 chr3 1614565 1614588 -216422570 + (TCTCC)n Simple_repeat Simple_repeat 1 23 0 21 57 0 0 chr3 1617107 1617142 -216420016 + AT_rich Low_complexity Low_complexity 1 35 0 2477 64 0 0 chr3 1618846 1619144 -216418014 - AluY SINE Alu -13 298 1 409 287 149 37 chr3 1619796 1619984 -216417174 - MIR SINE MIR -27 235 27 213 209 0 23 chr3 1620549 1620592 -216416566 + (CA)n Simple_repeat Simple_repeat 1 42 0 299 295 215 34 chr3 1621610 1621759 -216415399 + MER5A DNA MER1_type 14 189 0 327 309 29 37 chr3 1622022 1622158 -216415000 + L2 LINE L2 3138 3272 0 194 254 28 56 chr3 1622235 1622306 -216414852 + MIR3 SINE MIR 126 194 -14 342 248 94 16 chr3 1622643 1622771 -216414387 + MER5A DNA MER1_type 34 179 -10 2026 153 3 0 chr3 1623033 1623334 -216413824 - AluJb SINE Alu -10 302 1 433 283 29 7 chr3 1623968 1624106 -216413052 - L1ME3A LINE L1 -8 6162 6022 1435 295 142 10 chr3 1625084 1625831 -216411327 - L2 LINE L2 -3 3310 2447 3880 173 6 6 chr3 1625836 1626500 -216410658 + L1MB2 LINE L1 5507 6170 -1 262 200 88 0 chr3 1626500 1626580 -216410578 + Charlie7 DNA MER1_type 637 723 -1889 1134 231 80 15 chr3 1626694 1627018 -216410140 - L2 LINE L2 -848 2466 2122 1784 143 37 10 chr3 1627439 1627733 -216409425 + AluJo SINE Alu 1 302 -10 197 108 27 0 chr3 1627735 1627772 -216409386 + GA-rich Low_complexity Low_complexity 3 40 0 434 251 168 72 chr3 1627824 1628170 -216408988 + MLT1H LTR MaLR 23 401 -148 26 64 0 0 chr3 1628433 1628480 -216408678 + AT_rich Low_complexity Low_complexity 1 47 0 25 51 0 0 chr3 1629723 1629762 -216407396 + AT_rich Low_complexity Low_complexity 1 39 0 1543 137 115 46 chr3 1629909 1630253 -216406905 + MSTA LTR MaLR 3 428 0 281 335 120 50 chr3 1630262 1630686 -216406472 + L2 LINE L2 2818 3271 -1 1781 159 14 7 chr3 1631138 1631434 -216405724 + AluJb SINE Alu 5 302 -10 805 258 60 1 chr3 1631857 1632083 -216405075 - MIR SINE MIR -6 256 20 372 43 0 0 chr3 1632394 1632440 -216404718 + (TG)n Simple_repeat Simple_repeat 2 47 0 270 319 14 21 chr3 1633820 1633961 -216403197 + MIR SINE MIR 113 252 -10 281 0 0 0 chr3 1634139 1634170 -216402988 + U7 snRNA snRNA 2 32 -31 275 167 0 0 chr3 1634189 1634231 -216402927 + MLT1C LTR MaLR 28 69 -321 1331 180 214 0 chr3 1634231 1634525 -216402633 - MLT1A1 LTR MaLR 0 365 9 * 1537 198 95 29 chr3 1634521 1634797 -216402361 + MLT1C LTR MaLR 63 372 -95 2400 88 3 0 chr3 1634797 1635104 -216402054 + AluSx SINE Alu 1 308 -4 1537 198 95 29 chr3 1635104 1635205 -216401953 + MLT1C LTR MaLR 372 465 -2 1872 150 7 3 chr3 1635514 1635800 -216401358 - AluJb SINE Alu -15 297 11 962 280 37 47 chr3 1635887 1636316 -216400842 + L2 LINE L2 2886 3310 -3 23 0 0 0 chr3 1636619 1636642 -216400516 + AT_rich Low_complexity Low_complexity 1 23 0 1118 99 215 11 chr3 1636831 1636925 -216400233 - MER30 DNA MER1_type 0 230 156 225 0 0 0 chr3 1636925 1636950 -216400208 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1118 99 215 11 chr3 1636950 1637046 -216400112 - MER30 DNA MER1_type -74 156 1 941 207 84 0 chr3 1638901 1639104 -216398054 - MIR SINE MIR -31 231 12 436 274 160 9 chr3 1639157 1639376 -216397782 + MIR SINE MIR 5 256 -6 366 279 75 87 chr3 1639719 1639887 -216397271 + L1MC5 LINE L1 7552 7721 -284 749 168 26 0 chr3 1639887 1640000 -216397158 + FLAM_A SINE Alu 4 119 -14 366 279 75 87 chr3 1640000 1640303 -216396855 + L1MC5 LINE L1 7721 7948 -57 311 250 70 35 chr3 1640645 1640817 -216396341 - HAL1 LINE L1 -356 2151 1974 3035 74 0 6 chr3 1641566 1641932 -216395226 + THE1B LTR MaLR 1 364 0 201 264 38 0 chr3 1642052 1642105 -216395053 + MIR SINE MIR 167 221 -41 3872 154 10 56 chr3 1642203 1642932 -216394226 + L1MC1 LINE L1 5636 6330 -3 685 307 95 4 chr3 1643043 1643274 -216393884 + MIR SINE MIR 1 252 -10 350 286 25 25 chr3 1643282 1643401 -216393757 + L1MC/D LINE L1 5699 5817 -1991 630 157 9 0 chr3 1643417 1643525 -216393633 - L1MC1 LINE L1 -473 5860 5752 294 228 44 88 chr3 1643704 1643818 -216393340 + MIR SINE MIR 40 148 -60 236 94 19 57 chr3 1644506 1644559 -216392599 + L2 LINE L2 3192 3242 -30 185 200 0 0 chr3 1644703 1644733 -216392425 - L2 LINE L2 -26 3287 3258 361 219 58 2 chr3 1644802 1644905 -216392253 + MIR SINE MIR 42 152 -56 1697 153 3 36 chr3 1644995 1645137 -216392021 + AluJb SINE Alu 1 129 -183 2391 99 0 0 chr3 1645137 1645440 -216391718 + AluSq SINE Alu 1 303 -10 1697 153 3 36 chr3 1645440 1645598 -216391560 + AluJb SINE Alu 129 291 -21 211 318 135 56 chr3 1645957 1646083 -216391075 - L2 LINE L2 -3 3269 3134 1006 184 35 6 chr3 1646098 1646272 -216390886 + MER21B LTR ERV1 1 179 -684 482 294 150 7 chr3 1646888 1647041 -216390117 - MER5A DNA MER1_type -6 183 9 365 250 95 87 chr3 1647057 1647241 -216389917 + MER112 DNA MER1_type 1 189 -67 1638 175 10 36 chr3 1647241 1647549 -216389609 + AluJo SINE Alu 1 300 -12 365 250 95 87 chr3 1647549 1647616 -216389542 + MER112 DNA MER1_type 189 254 -2 825 188 38 42 chr3 1647849 1647900 -216389258 + L1MC5 LINE L1 6671 6721 -1240 1696 190 3 10 chr3 1647900 1648205 -216388953 + AluJo SINE Alu 1 303 -9 825 188 38 42 chr3 1648205 1648366 -216388792 + L1MC5 LINE L1 6721 6882 -1079 228 237 17 0 chr3 1648384 1648443 -216388715 + L1MC5 LINE L1 7189 7248 -713 623 168 0 35 chr3 1648487 1648600 -216388558 + FLAM_A SINE Alu 22 130 -12 720 221 129 40 chr3 1648600 1648872 -216388286 + L1MC5 LINE L1 7313 7608 -353 21 82 0 0 chr3 1648872 1648921 -216388237 + AT_rich Low_complexity Low_complexity 1 49 0 692 218 113 14 chr3 1649241 1649383 -216387775 - FAM SINE Alu -19 166 11 1152 255 99 49 chr3 1649898 1650177 -216386981 + L2 LINE L2 2804 3119 -194 3769 153 60 6 chr3 1650177 1650842 -216386316 - L1MB3 LINE L1 -2 6181 5481 1152 255 99 49 chr3 1650842 1651048 -216386110 + L2 LINE L2 3119 3313 0 195 42 0 0 chr3 1652062 1652086 -216385072 + (CA)n Simple_repeat Simple_repeat 1 24 0 242 290 86 0 chr3 1652597 1652690 -216384468 + MIR SINE MIR 37 137 -125 226 96 19 19 chr3 1654945 1654997 -216382161 + (TCC)n Simple_repeat Simple_repeat 1 52 0 277 203 188 0 chr3 1656074 1656143 -216381015 - L2 LINE L2 -4 3268 3187 198 103 0 0 chr3 1656194 1656223 -216380935 + (TAA)n Simple_repeat Simple_repeat 3 31 0 310 279 79 10 chr3 1656298 1656417 -216380741 - MIR SINE MIR -66 142 37 216 185 37 19 chr3 1656495 1656549 -216380609 + MIR SINE MIR 82 136 -72 420 243 207 36 chr3 1656688 1656896 -216380262 - MIR SINE MIR -1 261 20 1295 180 121 0 chr3 1657877 1658166 -216378992 + MER33 DNA MER1_type 1 324 0 1045 73 66 20 chr3 1658789 1658940 -216378218 + L1MA1 LINE L1 6145 6302 0 1621 248 83 54 chr3 1660147 1660243 -216376915 + L1MC4 LINE L1 7102 7194 -848 1989 155 0 3 chr3 1660243 1660547 -216376611 + AluJb SINE Alu 1 303 -9 1621 248 83 54 chr3 1660547 1660955 -216376203 + L1MC4 LINE L1 7194 7638 -404 712 154 24 0 chr3 1660955 1661078 -216376080 + L1MA6 LINE L1 6175 6300 0 1621 248 83 54 chr3 1661078 1661331 -216375827 + L1MC4 LINE L1 7638 7882 -160 1140 123 0 0 chr3 1661338 1661493 -216375665 + AluSg/x SINE Alu 142 296 -16 1921 139 3 3 chr3 1661860 1662148 -216375010 + AluSx SINE Alu 1 288 -24 207 100 0 0 chr3 1663106 1663136 -216374022 + (GGA)n Simple_repeat Simple_repeat 3 32 0 1727 117 62 25 chr3 1663215 1663489 -216373669 + AluSx SINE Alu 12 295 -17 204 158 0 0 chr3 1663489 1663527 -216373631 + G-rich Low_complexity Low_complexity 1 38 0 1841 153 0 4 chr3 1663636 1663933 -216373225 + AluSx SINE Alu 9 304 0 970 191 182 22 chr3 1664121 1664346 -216372812 + AluJo SINE Alu 29 289 -23 2206 133 0 0 chr3 1664426 1664734 -216372424 + AluSx SINE Alu 1 308 -4 556 114 13 0 chr3 1664800 1664879 -216372279 + MADE1 DNA Mariner 1 80 0 2230 110 0 3 chr3 1665293 1665601 -216371557 + AluSx SINE Alu 1 307 -5 201 303 34 22 chr3 1665871 1665960 -216371198 + L2 LINE L2 3219 3308 -5 21 36 0 0 chr3 1666042 1666070 -216371088 + AT_rich Low_complexity Low_complexity 1 28 0 2041 148 13 0 chr3 1666116 1666419 -216370739 + AluJb SINE Alu 1 307 -5 2754 134 28 77 chr3 1666525 1666768 -216370390 + L1MB8 LINE L1 5632 5885 -293 2263 63 40 27 chr3 1666768 1667069 -216370089 + AluSq SINE Alu 1 305 -8 2754 134 28 77 chr3 1667069 1667367 -216369791 + L1MB8 LINE L1 5885 6146 -32 1256 188 96 11 chr3 1667367 1667638 -216369520 - AluJo SINE Alu -18 294 1 2754 134 28 77 chr3 1667638 1667670 -216369488 + L1MB8 LINE L1 6146 6178 0 184 247 398 11 chr3 1667680 1667773 -216369385 + MIR SINE MIR 49 177 -85 387 0 0 0 chr3 1667833 1667876 -216369282 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1326 154 5 23 chr3 1667876 1668097 -216369061 - AluJo SINE Alu -32 280 64 571 261 69 42 chr3 1668558 1668776 -216368382 + MIR SINE MIR 29 262 0 262 275 137 30 chr3 1668943 1669074 -216368084 - MIR3 SINE MIR -48 160 16 255 103 0 0 chr3 1669147 1669186 -216367972 + (TTCA)n Simple_repeat Simple_repeat 3 41 0 1855 95 4 58 chr3 1669199 1669473 -216367685 - AluSx SINE Alu -53 259 1 24 0 0 0 chr3 1669479 1669503 -216367655 + AT_rich Low_complexity Low_complexity 1 24 0 491 296 87 6 chr3 1670283 1670455 -216366703 - MIR SINE MIR -16 246 61 407 190 0 25 chr3 1670487 1670566 -216366592 + MER5A DNA MER1_type 4 80 -109 822 216 282 25 chr3 1670569 1670810 -216366348 + AluSx SINE Alu 9 311 -1 622 212 18 0 chr3 1670810 1670923 -216366235 + MER5A DNA MER1_type 72 186 -3 2041 183 21 50 chr3 1671442 1671907 -216365251 - MLT1D LTR MaLR 0 505 54 578 223 159 19 chr3 1673108 1673265 -216363893 + MER5A DNA MER1_type 1 179 -10 2624 39 3 0 chr3 1673905 1674215 -216362943 + AluY SINE Alu 1 311 0 201 276 53 0 chr3 1674523 1674599 -216362559 - MIR SINE MIR 0 262 183 839 213 33 0 chr3 1724628 1724872 -216312286 + L1M1 LINE L1 3466 3717 -3848 942 55 16 8 chr3 1724872 1725000 -216312158 + AluY SINE Alu 181 309 -2 3964 206 25 16 chr3 1725000 1726000 -216311158 + L1M1 LINE L1 3711 4719 -2846 345 276 57 0 chr3 1726738 1726843 -216310315 - MIR SINE MIR -2 260 150 824 168 28 10 chr3 1726843 1727125 -216310033 - MLT1A1 LTR MaLR 0 365 3 483 198 83 0 chr3 1727126 1727222 -216309936 - MIR SINE MIR -107 155 52 2209 115 0 0 chr3 1727690 1727986 -216309172 - AluSx SINE Alu -16 296 1 2261 116 0 0 chr3 1728053 1728347 -216308811 - AluSx SINE Alu -18 294 1 1805 177 17 0 chr3 1728882 1729181 -216307977 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr3 1729239 1729546 -216307612 + AluSx SINE Alu 1 302 -10 552 305 53 10 chr3 1729704 1730098 -216307060 + L1MEc LINE L1 1243 1653 -4954 554 308 108 71 chr3 1730353 1730843 -216306315 + L2 LINE L2 2805 3312 -1 2572 34 0 3 chr3 1731288 1731586 -216305572 - AluY SINE Alu -14 297 1 230 183 0 17 chr3 1732399 1732459 -216304699 + L1MEc LINE L1 2006 2064 -4362 252 333 0 0 chr3 1732460 1732526 -216304632 + (TATATG)n Simple_repeat Simple_repeat 6 71 0 316 266 0 43 chr3 1732526 1732620 -216304538 + L1MC4 LINE L1 6614 6703 -1339 301 322 0 0 chr3 1732600 1732687 -216304471 - L1MC4 LINE L1 -1339 6703 6617 * 213 231 0 0 chr3 1732689 1732728 -216304430 + (TATATG)n Simple_repeat Simple_repeat 6 44 0 311 322 0 0 chr3 1732728 1732818 -216304340 - L1MC4 LINE L1 -1339 6703 6614 301 322 0 0 chr3 1732746 1732836 -216304322 + L1MC4 LINE L1 6614 6703 -1339 * 659 232 0 11 chr3 1732869 1733046 -216304112 + (TATATG)n Simple_repeat Simple_repeat 2 176 0 977 112 0 0 chr3 1733069 1733194 -216303964 - AluSq/x SINE Alu -188 125 1 308 155 0 0 chr3 1733194 1733252 -216303906 + L1MA7 LINE L1 4326 4383 -1763 5309 136 28 18 chr3 1733295 1734526 -216302632 + L1MA7 LINE L1 4585 5836 -455 2330 79 0 3 chr3 1734526 1734830 -216302328 + AluY SINE Alu 1 303 -8 5309 136 28 18 chr3 1734830 1735291 -216301867 + L1MA7 LINE L1 5836 6291 0 420 236 21 103 chr3 1735881 1736114 -216301044 + L1MC4a LINE L1 5722 5935 -1873 1309 100 0 0 chr3 1736461 1736631 -216300527 + AluY SINE Alu 137 306 -5 4140 179 22 10 chr3 1736631 1737334 -216299824 - L1 LINE L1 -1925 4221 3502 2163 106 0 3 chr3 1737334 1737642 -216299516 - AluSx SINE Alu 0 307 1 4140 179 22 10 chr3 1737642 1737831 -216299327 - L1 LINE L1 -2644 3502 3317 4283 148 26 1 chr3 1737989 1738744 -216298414 - L1MB7 LINE L1 -20 6164 5391 328 301 11 11 chr3 1738784 1738877 -216298281 - L2 LINE L2 -43 3229 3137 1462 170 52 28 chr3 1739113 1739242 -216297916 + AluJb SINE Alu 1 125 -187 2457 70 0 3 chr3 1739242 1739543 -216297615 + AluSx SINE Alu 1 300 -12 1462 170 52 28 chr3 1739543 1739701 -216297457 + AluJb SINE Alu 125 295 -17 766 245 92 40 chr3 1740255 1740504 -216296654 - MIR SINE MIR 0 262 1 2236 78 17 0 chr3 1741087 1741382 -216295776 + AluY SINE Alu 1 300 -11 1470 203 108 16 chr3 1741529 1741569 -216295589 + Charlie4a DNA MER1_type 30 65 -1896 569 91 0 0 chr3 1741569 1741646 -216295512 + MADE1 DNA Mariner 2 78 -2 1470 203 108 16 chr3 1741646 1741960 -216295198 + Charlie4a DNA MER1_type 65 434 -1527 205 27 81 0 chr3 1741960 1741997 -216295161 + T-rich Low_complexity Low_complexity 5 44 0 1470 203 108 16 chr3 1741997 1742075 -216295083 + Charlie4a DNA MER1_type 434 503 -5 806 333 71 50 chr3 1742120 1742558 -216294600 + L2 LINE L2 2826 3272 0 187 343 74 40 chr3 1742590 1742813 -216294345 - L2 LINE L2 -913 2401 2160 363 325 16 26 chr3 1742813 1743004 -216294154 + MER5A DNA MER1_type 1 189 0 187 343 74 40 chr3 1743004 1743130 -216294028 - L2 LINE L2 -1154 2160 2040 633 204 95 41 chr3 1745551 1745845 -216291313 - MER113 DNA MER1_type? -37 484 175 420 266 30 39 chr3 1745881 1746084 -216291074 - L1ME3A LINE L1 -7 6163 5963 1517 190 55 92 chr3 1746172 1746552 -216290606 - L1MC5 LINE L1 -436 7525 7132 2592 110 6 3 chr3 1746552 1746915 -216290243 - THE1B LTR MaLR 0 364 1 1517 190 55 92 chr3 1746915 1747106 -216290052 - L1MC5 LINE L1 -829 7132 6976 1238 192 7 19 chr3 1747106 1747377 -216289781 - L1MD2 LINE L1 -2 6357 6090 1517 190 55 92 chr3 1747377 1747425 -216289733 - L1MC5 LINE L1 -985 6976 6928 1801 165 0 38 chr3 1747425 1747741 -216289417 + AluJo SINE Alu 1 304 -8 306 190 25 0 chr3 1747808 1747887 -216289271 - L1MB7 LINE L1 -10 6174 6094 374 222 40 20 chr3 1747959 1748058 -216289100 - L1MB8 LINE L1 -103 6075 5975 561 218 19 46 chr3 1748147 1748301 -216288857 - L1MC5 LINE L1 -1183 6859 6630 565 317 50 32 chr3 1748744 1749276 -216287882 - HAL1b LINE L1 -725 623 79 1836 173 3 6 chr3 1749276 1749589 -216287569 - AluJo SINE Alu 0 312 1 565 317 50 32 chr3 1749589 1749617 -216287541 - HAL1b LINE L1 -1269 79 53 1920 141 3 16 chr3 1749773 1750077 -216287081 - AluSx SINE Alu -12 300 1 251 300 14 0 chr3 1750375 1750445 -216286713 + CT-rich Low_complexity Low_complexity 2 72 0 2224 19 0 15 chr3 1750552 1750813 -216286345 + AluY SINE Alu 41 297 -14 3496 139 2 13 chr3 1751523 1752056 -216285102 - MER1A DNA MER1_type 0 527 1 2394 73 0 29 chr3 1752806 1753119 -216284039 - AluSq SINE Alu -9 304 1 552 183 87 32 chr3 1753218 1753344 -216283814 + FLAM_C SINE Alu 1 133 0 240 287 58 19 chr3 1753448 1753534 -216283624 + MIR SINE MIR 22 112 -96 1910 135 0 10 chr3 1753534 1753830 -216283328 - AluJo SINE Alu -19 293 1 240 287 58 19 chr3 1753830 1753842 -216283316 + MIR SINE MIR 112 122 -86 653 309 79 14 chr3 1753842 1754473 -216282685 - L1MDa LINE L1 -3049 3080 2409 1374 180 0 42 chr3 1754475 1754781 -216282377 - MER31B LTR ERV1 -173 293 1 21 100 0 0 chr3 1754857 1754927 -216282231 + AT_rich Low_complexity Low_complexity 1 70 0 387 249 58 39 chr3 1754938 1755104 -216282054 - L1MDa LINE L1 -3711 2418 2257 2250 123 7 0 chr3 1755104 1755414 -216281744 - AluSx SINE Alu 0 312 1 387 249 58 39 chr3 1755414 1755622 -216281536 - L1MDa LINE L1 -3872 2257 2038 373 253 150 60 chr3 1755905 1756359 -216280799 - L1MDa LINE L1 -4585 1725 1231 308 237 40 0 chr3 1756391 1756467 -216280691 - L1MDa LINE L1 -3203 2926 2848 351 213 27 87 chr3 1756490 1756640 -216280518 - L1MDa LINE L1 -4929 1190 1050 298 207 62 41 chr3 1756653 1756798 -216280360 - L1MDa LINE L1 -4121 2419 2272 813 152 0 29 chr3 1756933 1757071 -216280087 - AluJb SINE Alu -178 134 1 1748 225 92 42 chr3 1757084 1757846 -216279312 - L1MDa LINE L1 -4421 2119 1164 2047 110 3 10 chr3 1757846 1758145 -216279013 + AluSx SINE Alu 3 299 -13 1748 225 92 42 chr3 1758145 1758235 -216278923 - L1MDa LINE L1 -5376 1164 1080 328 311 10 19 chr3 1758413 1758516 -216278642 + MIR SINE MIR 149 250 -12 1916 147 72 0 chr3 1758775 1759108 -216278050 - L1MB4 LINE L1 -8 6172 5816 507 295 66 56 chr3 1760186 1760488 -216276670 - L2 LINE L2 -1 3312 3008 303 273 293 59 chr3 1760486 1760926 -216276232 - L2 LINE L2 -414 2900 2358 * 477 342 96 21 chr3 1760887 1761168 -216275990 + L3 LINE CR1 1181 1482 -95 363 244 37 0 chr3 1761171 1761253 -216275905 + MER94 DNA DNA 1 85 -49 2630 203 21 20 chr3 1761260 1761950 -216275208 - LTR27 LTR ERV1 -3 633 3 189 420 37 0 chr3 1762021 1762102 -216275056 + L3 LINE CR1 1484 1567 -10 265 278 14 0 chr3 1762407 1762479 -216274679 + L2 LINE L2 3241 3313 0 438 261 6 85 chr3 1762565 1762730 -216274428 - MIR SINE MIR -78 184 33 300 261 67 8 chr3 1762730 1762849 -216274309 - MER103 DNA DNA -31 135 10 313 305 162 24 chr3 1762927 1763094 -216274064 + MIR3 SINE MIR 8 197 -11 367 253 103 79 chr3 1763907 1764160 -216272998 + L1ME4a LINE L1 5624 5882 -239 1833 155 0 0 chr3 1764427 1764711 -216272447 + AluJo SINE Alu 11 294 -18 311 282 75 62 chr3 1764716 1764957 -216272201 - L1ME4a LINE L1 -70 6051 5808 309 171 100 0 chr3 1764970 1765040 -216272118 - L1ME4a LINE L1 -500 5621 5545 2337 92 10 104 chr3 1766948 1767350 -216269808 + THE1B LTR MaLR 1 364 0 997 238 17 26 chr3 1767690 1767921 -216269237 - MIR SINE MIR -27 235 7 1082 180 15 40 chr3 1767991 1768191 -216268967 + MER20 DNA MER1_type 25 219 0 2305 150 43 26 chr3 1768996 1769415 -216267743 - MSTB LTR MaLR 0 426 1 22 70 0 0 chr3 1769415 1769458 -216267700 + AT_rich Low_complexity Low_complexity 1 43 0 221 205 0 0 chr3 1769523 1769562 -216267596 + L2 LINE L2 3262 3300 -13 1896 96 64 0 chr3 1769686 1769757 -216267401 - L1PB1 LINE L1 -285 5866 5801 261 0 0 0 chr3 1769757 1769786 -216267372 + (TG)n Simple_repeat Simple_repeat 2 30 0 1896 96 64 0 chr3 1769786 1769995 -216267163 - L1PB1 LINE L1 -350 5801 5568 1893 86 67 0 chr3 1769995 1770259 -216266899 + L1PB1 LINE L1 5864 6149 -2 31 26 0 0 chr3 1770260 1770298 -216266860 + AT_rich Low_complexity Low_complexity 1 38 0 859 230 47 74 chr3 1770357 1770652 -216266506 + L1MC/D LINE L1 5589 5874 -390 26 0 0 0 chr3 1770673 1770699 -216266459 + AT_rich Low_complexity Low_complexity 1 26 0 1766 142 0 17 chr3 1771281 1771576 -216265582 + AluJb SINE Alu 1 290 -22 631 276 57 38 chr3 1771713 1771923 -216265235 - MIR SINE MIR -34 228 15 328 267 82 44 chr3 1771993 1772180 -216264978 - MIR SINE MIR -33 229 40 181 206 73 88 chr3 1772268 1772336 -216264822 + MIR SINE MIR 119 185 -77 2193 84 0 3 chr3 1772370 1772669 -216264489 + AluY SINE Alu 1 298 -13 326 170 0 0 chr3 1774016 1774069 -216263089 + L2 LINE L2 3220 3272 0 535 287 96 20 chr3 1774314 1774565 -216262593 - LTR16A LTR ERVL -1 449 180 26 0 0 0 chr3 1775683 1775709 -216261449 + AT_rich Low_complexity Low_complexity 1 26 0 416 260 82 7 chr3 1776123 1776269 -216260889 - L1ME4a LINE L1 -5 6116 5960 1182 231 20 4 chr3 1776279 1776530 -216260628 - MIR SINE MIR 0 262 8 342 275 126 60 chr3 1776551 1776915 -216260243 - L1ME4a LINE L1 -177 5944 5557 770 188 79 50 chr3 1777003 1777205 -216259953 - MLT1A1 LTR MaLR -1 364 157 1978 131 3 0 chr3 1777223 1777533 -216259625 - AluSx SINE Alu 0 311 1 315 311 43 30 chr3 1777534 1777698 -216259460 - L1ME LINE L1 -454 5667 5502 1860 136 58 0 chr3 1777807 1778102 -216259056 - AluSx SINE Alu 0 312 1 1049 171 0 0 chr3 1778721 1778885 -216258273 - AluJb SINE Alu -18 294 131 1140 140 0 6 chr3 1778899 1779078 -216258080 + AluSx SINE Alu 1 178 -134 2155 96 0 10 chr3 1780712 1781013 -216256145 + AluSg SINE Alu 1 298 -12 261 98 0 0 chr3 1787603 1787644 -216249514 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 1787692 1787724 -216249434 + AT_rich Low_complexity Low_complexity 1 32 0 236 350 49 16 chr3 1788444 1788567 -216248591 - L2 LINE L2 -4 3268 3142 486 241 7 78 chr3 1789210 1789351 -216247807 + MIR SINE MIR 37 167 -95 1202 135 5 0 chr3 1790687 1790879 -216246279 - AluSg/x SINE Alu -6 306 114 663 201 14 21 chr3 1792140 1792284 -216244874 + Tigger3(Golem) DNA MER2_type 2887 3029 0 924 147 26 0 chr3 1792680 1792836 -216244322 + AluSg/x SINE Alu 120 279 -31 429 20 0 0 chr3 1792839 1792889 -216244269 + (CA)n Simple_repeat Simple_repeat 2 51 0 1631 149 101 0 chr3 1793363 1793677 -216243481 + MER2 DNA MER2_type 1 345 0 612 162 40 23 chr3 1800241 1800550 -216236608 + (TTAGGG)n Simple_repeat Simple_repeat 1 314 0 200 250 135 0 chr3 1800860 1800912 -216236246 + MIR SINE MIR 86 144 -118 2258 151 41 17 chr3 1801741 1802157 -216235001 - MSTB1 LTR MaLR -6 426 1 296 280 70 32 chr3 1802785 1802942 -216234216 - L1MC5 LINE L1 -91 7870 7708 1977 109 16 13 chr3 1803727 1804031 -216233127 + AluSx SINE Alu 2 306 -6 214 323 0 15 chr3 1804456 1804521 -216232637 + MIR SINE MIR 186 249 -13 2262 97 0 0 chr3 1806689 1806999 -216230159 + AluSg SINE Alu 1 310 0 1296 190 37 53 chr3 1807537 1807837 -216229321 + AluJb SINE Alu 1 295 -7 271 315 61 42 chr3 1808044 1808209 -216228949 - L2 LINE L2 -17 3296 3129 253 244 0 13 chr3 1809345 1809423 -216227735 - MLT1B LTR MaLR -234 156 80 1907 120 0 7 chr3 1810645 1810919 -216226239 - AluSx SINE Alu -40 272 1 2370 113 49 0 chr3 1817693 1818039 -216219119 + THE1B LTR MaLR 2 364 0 565 121 0 44 chr3 1820626 1820717 -216216441 - AluSp/q SINE Alu -16 297 211 409 301 90 48 chr3 1820993 1821370 -216215788 + L1ME LINE L1 5259 5662 -459 2266 103 3 23 chr3 1821370 1821680 -216215478 + AluSx SINE Alu 3 306 -6 409 301 90 48 chr3 1821680 1821780 -216215378 + L1ME LINE L1 5662 5756 -365 363 303 113 33 chr3 1822572 1822759 -216214399 + MIR3 SINE MIR 2 203 -5 504 296 87 24 chr3 1825068 1825274 -216211884 - MIR SINE MIR 0 262 44 2165 119 6 16 chr3 1826643 1826816 -216210342 - AluSx SINE Alu -4 308 138 1932 124 72 0 chr3 1826816 1826987 -216210171 - AluSq SINE Alu -2 311 109 188 35 35 0 chr3 1826987 1827016 -216210142 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1932 124 72 0 chr3 1827016 1827134 -216210024 - AluSq SINE Alu -204 109 1 2165 119 6 16 chr3 1827134 1827271 -216209887 - AluSx SINE Alu -174 138 1 420 293 40 59 chr3 1827271 1827593 -216209565 - L1MCa LINE L1 -3863 2563 2242 520 271 50 14 chr3 1829864 1830048 -216207110 - MIR SINE MIR -6 256 68 191 253 36 96 chr3 1831654 1831737 -216205421 - L2 LINE L2 -2 3311 3234 438 220 47 27 chr3 1832276 1832426 -216204732 + CT-rich Low_complexity Low_complexity 5 157 0 902 83 61 8 chr3 1834263 1834395 -216202763 + MER85 DNA T2_type 1 139 0 929 76 8 23 chr3 1835489 1835621 -216201537 + AluY SINE Alu 56 185 -126 339 358 34 22 chr3 1836066 1836245 -216200913 + MIR3 SINE MIR 19 199 -9 21 0 0 0 chr3 1837012 1837033 -216200125 + GC_rich Low_complexity Low_complexity 1 21 0 505 231 12 0 chr3 1838926 1839099 -216198059 + (CAT)n Simple_repeat Simple_repeat 3 177 0 729 213 4 0 chr3 1839125 1839366 -216197792 + (CAT)n Simple_repeat Simple_repeat 1 242 0 33 0 0 0 chr3 1840017 1840050 -216197108 + AT_rich Low_complexity Low_complexity 1 33 0 616 203 8 17 chr3 1841210 1841328 -216195830 - FLAM_A SINE Alu -24 118 2 2133 111 4 0 chr3 1841473 1841789 -216195369 + AluSx SINE Alu 1 317 0 226 441 31 31 chr3 1842247 1842374 -216194784 + polypurine Low_complexity Low_complexity 5 131 0 378 138 25 25 chr3 1845135 1845215 -216191943 - AluS SINE Alu -223 80 1 332 43 22 0 chr3 1847558 1847604 -216189554 + (TAA)n Simple_repeat Simple_repeat 1 47 0 258 56 0 0 chr3 1847642 1847678 -216189480 + (TG)n Simple_repeat Simple_repeat 2 37 0 430 339 20 8 chr3 1849386 1849745 -216187413 + (TGGG)n Simple_repeat Simple_repeat 1 363 0 250 341 8 8 chr3 1849719 1849851 -216187307 + G-rich Low_complexity Low_complexity 5 136 0 * 688 204 97 62 chr3 1851317 1851493 -216185665 + AluJo SINE Alu 2 183 -129 2205 113 0 0 chr3 1852554 1852836 -216184322 - AluSq SINE Alu -31 282 1 298 393 43 34 chr3 1854093 1854510 -216182648 - L2 LINE L2 -585 2729 2309 752 234 6 12 chr3 1854567 1854734 -216182424 - MIR SINE MIR -23 239 74 10229 45 6 10 chr3 1854738 1856088 -216181070 - L1P LINE L1 -758 5388 4044 261 57 0 0 chr3 1857229 1857264 -216179894 + (CA)n Simple_repeat Simple_repeat 2 36 0 488 354 28 6 chr3 1858347 1858528 -216178630 + MIR SINE MIR 3 187 -75 2315 153 88 7 chr3 1860091 1860523 -216176635 - MLT1C LTR MaLR 0 467 1 1184 233 102 32 chr3 1861256 1861728 -216175430 - MLT1D LTR MaLR 0 505 1 1478 145 35 14 chr3 1862371 1862654 -216174504 + L1MB3 LINE L1 5893 6181 -2 244 229 60 78 chr3 1862880 1863046 -216174112 + LTR16A1 LTR ERVL 245 407 -50 2074 149 10 0 chr3 1863406 1863715 -216173443 + AluSx SINE Alu 1 312 0 814 202 140 36 chr3 1863993 1864300 -216172858 - LTR37A LTR ERV1 -4 422 84 827 201 0 18 chr3 1864307 1864471 -216172687 + FRAM SINE Alu 3 163 -3 1509 190 4 11 chr3 1864535 1864809 -216172349 + AluJo SINE Alu 40 311 -1 392 234 128 0 chr3 1864930 1865071 -216172087 + MER103 DNA DNA 8 166 0 539 350 16 40 chr3 1865686 1865936 -216171222 + MIR SINE MIR 9 250 -12 450 202 42 8 chr3 1866107 1866226 -216170932 - MER113 DNA MER1_type? -397 124 2 319 286 216 12 chr3 1866230 1866384 -216170774 + L3 LINE CR1 1288 1409 -168 2688 181 11 29 chr3 1866384 1866904 -216170254 + MLT2B2 LTR ERVL 1 511 -4 319 286 216 12 chr3 1866904 1866990 -216170168 + L3 LINE CR1 1409 1577 0 375 60 0 0 chr3 1867486 1867536 -216169622 + (CA)n Simple_repeat Simple_repeat 2 51 0 378 248 90 35 chr3 1867890 1868035 -216169123 - MIR SINE MIR -36 226 74 339 260 72 27 chr3 1868079 1868230 -216168928 - MIR3 SINE MIR -30 178 28 190 225 0 0 chr3 1868402 1868442 -216168716 - MIR SINE MIR -13 249 210 288 360 0 0 chr3 1868543 1868643 -216168515 - MIR SINE MIR -76 132 33 322 255 39 98 chr3 1868803 1868956 -216168202 + L1M2a LINE L1 610 753 -6415 258 328 61 30 chr3 1869464 1869595 -216167563 + MIR SINE MIR 21 155 -107 567 243 69 129 chr3 1869751 1870184 -216166974 - LTR16C LTR ERVL -3 488 82 364 219 61 0 chr3 1870250 1870332 -216166826 + L2 LINE L2 3186 3272 0 284 233 50 0 chr3 1870542 1870602 -216166556 + L2 LINE L2 3198 3260 -12 322 218 65 73 chr3 1870943 1871249 -216165909 + MLT1H LTR MaLR 206 549 0 21 36 0 0 chr3 1873031 1873059 -216164099 + AT_rich Low_complexity Low_complexity 1 28 0 517 266 50 50 chr3 1873115 1873176 -216163982 + MIR SINE MIR 41 101 -161 1441 217 81 36 chr3 1873176 1873619 -216163539 - MLT1C LTR MaLR 0 467 5 517 266 50 50 chr3 1873619 1873779 -216163379 + MIR SINE MIR 100 262 0 405 313 22 15 chr3 1874210 1874344 -216162814 + MIR SINE MIR 20 154 -108 2443 154 0 5 chr3 1874377 1874799 -216162359 + L1MB3 LINE L1 5757 6176 -7 25 0 0 0 chr3 1874799 1874824 -216162334 + AT_rich Low_complexity Low_complexity 1 25 0 494 299 41 7 chr3 1875052 1875199 -216161959 + MIR3 SINE MIR 14 165 -43 603 112 45 15 chr3 1875464 1875598 -216161560 + L1MB2 LINE L1 6034 6171 0 2109 145 0 0 chr3 1875898 1876208 -216160950 + AluJb SINE Alu 1 310 -2 531 346 121 32 chr3 1876500 1876847 -216160311 - L2 LINE L2 0 3272 2895 2345 100 0 3 chr3 1877119 1877429 -216159729 + AluSx SINE Alu 1 309 -3 2387 148 54 6 chr3 1878719 1879239 -216157919 - L1MC1 LINE L1 -18 6315 5727 291 346 60 39 chr3 1879315 1879497 -216157661 - L3 LINE CR1 -32 1545 1360 1983 87 52 16 chr3 1879585 1879791 -216157367 - L1PA12 LINE L1 -2 6166 5944 2974 119 2 5 chr3 1879791 1880226 -216156932 - MER57B LTR ERV1 0 434 1 1983 87 52 16 chr3 1880226 1880329 -216156829 - L1PA12 LINE L1 -224 5944 5846 384 331 190 20 chr3 1880494 1880884 -216156274 - L3 LINE CR1 -346 1231 776 569 300 95 71 chr3 1880975 1881471 -216155687 - L2 LINE L2 -1 3312 2805 24 32 0 0 chr3 1881863 1881894 -216155264 + AT_rich Low_complexity Low_complexity 1 31 0 220 250 77 0 chr3 1882184 1882236 -216154922 - L2 LINE L2 0 3272 3217 990 211 5 0 chr3 1882242 1882436 -216154722 + MER63A DNA MER1_type 5 199 -11 412 328 50 76 chr3 1882451 1883041 -216154117 - L2 LINE L2 -51 3221 2661 529 90 13 0 chr3 1883170 1883248 -216153910 - MADE1 DNA Mariner -1 79 1 706 207 19 58 chr3 1883509 1883717 -216153441 + MER3 DNA MER1_type 1 200 -9 229 322 0 0 chr3 1884527 1884586 -216152572 - L2 LINE L2 -2 3311 3253 2149 117 0 0 chr3 1885245 1885535 -216151623 - AluSc SINE Alu -12 297 8 321 324 94 18 chr3 1885755 1885925 -216151233 - MIR SINE MIR -65 197 15 189 250 54 0 chr3 1886656 1886712 -216150446 - MIR SINE MIR -79 183 125 339 308 0 34 chr3 1888462 1888579 -216148579 - MIR3 SINE MIR -90 118 6 844 272 66 11 chr3 1888690 1888977 -216148181 + MER102b DNA MER1_type 21 323 -18 2154 178 10 0 chr3 1889156 1889550 -216147608 - MER57A LTR ERV1 0 403 6 424 91 0 26 chr3 1889746 1889823 -216147335 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 190 279 209 0 chr3 1889877 1889963 -216147195 - L2 LINE L2 -1 3312 3209 550 306 52 35 chr3 1890207 1890439 -216146719 - MIR SINE MIR -10 252 17 303 28 0 0 chr3 1890512 1890548 -216146610 + (CA)n Simple_repeat Simple_repeat 2 37 0 1152 86 0 0 chr3 1891051 1891203 -216145955 + AluY SINE Alu 160 311 0 479 304 104 11 chr3 1892077 1892337 -216144821 - L2 LINE L2 0 3313 3030 556 291 57 40 chr3 1892585 1892812 -216144346 + MIR SINE MIR 20 250 -12 22 0 0 0 chr3 1893224 1893246 -216143912 + AT_rich Low_complexity Low_complexity 1 22 0 252 266 0 0 chr3 1894200 1894264 -216142894 - MER117 DNA MER1_type -119 78 15 397 302 78 0 chr3 1896307 1896504 -216140654 - MIR SINE MIR 0 262 50 193 294 206 10 chr3 1896945 1897047 -216140111 - MIR SINE MIR -138 124 3 366 367 6 28 chr3 1897383 1897563 -216139595 - MIR3 SINE MIR -10 198 23 275 360 74 46 chr3 1897797 1897972 -216139186 + L3 LINE CR1 214 393 -1184 815 346 99 9 chr3 1898211 1898460 -216138698 + L3 LINE CR1 400 625 -952 210 37 0 0 chr3 1898460 1898487 -216138671 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 815 346 99 9 chr3 1898487 1898691 -216138467 + L3 LINE CR1 625 894 -683 1053 179 10 0 chr3 1899046 1899241 -216137917 - MER58 DNA MER1_type -2187 233 37 198 0 0 0 chr3 1899273 1899295 -216137863 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 331 44 0 0 chr3 1899725 1899790 -216137368 + AluY SINE Alu 237 301 0 1666 210 57 7 chr3 1900661 1901099 -216136059 - MLT1C LTR MaLR 0 467 8 1716 71 5 0 chr3 1901159 1901369 -216135789 + AluY SINE Alu 86 296 -15 11364 119 19 38 chr3 1901393 1901536 -216135622 + Tigger1 DNA MER2_type 1 145 -2273 1090 113 60 0 chr3 1901536 1901704 -216135454 - L1PB3 LINE L1 -1 6153 5976 11364 119 19 38 chr3 1901704 1902298 -216134860 + Tigger1 DNA MER2_type 145 749 -1669 2136 115 30 7 chr3 1902298 1902569 -216134589 + AluSq SINE Alu 1 281 -32 960 122 23 0 chr3 1902569 1902741 -216134417 + GA-rich Low_complexity Low_complexity 3 178 0 2136 115 30 7 chr3 1902741 1902773 -216134385 + AluSq SINE Alu 281 311 -2 11364 119 19 38 chr3 1902773 1904006 -216133152 + Tigger1 DNA MER2_type 749 1934 -484 2186 152 20 93 chr3 1904006 1904499 -216132659 - LTR32 LTR ERVL 0 471 15 2955 140 10 6 chr3 1904499 1904985 -216132173 + Tigger1 DNA MER2_type 1930 2417 -1 434 274 42 53 chr3 1905085 1905275 -216131883 - MIR SINE MIR -36 226 39 315 452 25 0 chr3 1905468 1905625 -216131533 - L2 LINE L2 -12 3260 3100 * 621 292 31 5 chr3 1905623 1905815 -216131343 - MIR SINE MIR -1 261 65 354 304 9 9 chr3 1906018 1906133 -216131025 + MIR SINE MIR 137 251 -11 245 289 22 44 chr3 1906429 1906519 -216130639 + L3 LINE CR1 1488 1575 -2 475 305 72 6 chr3 1907800 1907967 -216129191 + MIR SINE MIR 37 214 -48 783 73 47 80 chr3 1908567 1908582 -216128576 + L1MA5A LINE L1 6153 6167 -130 1827 153 40 35 chr3 1908582 1908955 -216128203 + THE1C LTR MaLR 1 375 0 783 73 47 80 chr3 1908955 1909063 -216128095 + L1MA5A LINE L1 6167 6273 -24 455 105 53 0 chr3 1909063 1909089 -216128069 + MADE1 DNA Mariner 1 24 -56 2312 84 19 10 chr3 1909089 1909397 -216127761 - AluY SINE Alu 0 311 1 455 105 53 0 chr3 1909397 1909446 -216127712 + MADE1 DNA Mariner 24 80 0 783 73 47 80 chr3 1909446 1909471 -216127687 + L1MA5A LINE L1 6273 6297 0 1161 195 20 28 chr3 1910185 1910516 -216126642 - MLT2B3 LTR ERVL 0 554 231 1401 159 39 0 chr3 1910528 1910786 -216126372 - MLT2A2 LTR ERVL -185 268 1 698 296 102 19 chr3 1910880 1911194 -216125964 + MER102b DNA MER1_type 2 341 0 210 288 82 0 chr3 1911296 1911369 -216125789 + L2 LINE L2 3235 3313 0 238 281 67 11 chr3 1911377 1911466 -216125692 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 1912694 1912885 -216124273 - MIR SINE MIR -43 219 18 304 272 25 0 chr3 1912995 1913076 -216124082 - MER81 DNA DNA -5 109 27 260 184 0 20 chr3 1913099 1913148 -216124010 - MER81 DNA DNA -66 48 1 2377 124 5 22 chr3 1913327 1913697 -216123461 + THE1B LTR MaLR 1 364 0 294 320 56 8 chr3 1913951 1914076 -216123082 - MIR SINE MIR -29 233 103 355 271 75 0 chr3 1915004 1915137 -216122021 + LTR67 LTR ERVL 403 545 -12 2246 103 3 10 chr3 1915183 1915495 -216121663 - AluSg SINE Alu 0 310 1 1632 167 39 33 chr3 1915581 1915917 -216121241 - MER7A DNA MER2_type -9 337 2 21 0 0 0 chr3 1916073 1916094 -216121064 + AT_rich Low_complexity Low_complexity 1 21 0 205 353 35 12 chr3 1916266 1916351 -216120807 - MIR SINE MIR 0 262 176 496 286 31 26 chr3 1916739 1916931 -216120227 - MIR SINE MIR 0 262 70 1131 179 37 34 chr3 1917145 1917413 -216119745 - L1MB8 LINE L1 -75 6103 5835 186 191 0 0 chr3 1917702 1917744 -216119414 + (TG)n Simple_repeat Simple_repeat 2 43 0 217 89 44 0 chr3 1920687 1920732 -216116426 + (TTA)n Simple_repeat Simple_repeat 2 48 0 186 133 0 0 chr3 1921045 1921075 -216116083 + (T)n Simple_repeat Simple_repeat 1 30 0 286 339 106 21 chr3 1925012 1925201 -216111957 - MIR SINE MIR -21 241 37 419 234 81 16 chr3 1925516 1925640 -216111518 - MIR SINE MIR -18 244 113 584 292 80 56 chr3 1926383 1926722 -216110436 - L1ME4a LINE L1 0 6121 5775 252 268 0 0 chr3 1929757 1929813 -216107345 + L2 LINE L2 3176 3231 -41 2203 137 44 34 chr3 1930015 1930238 -216106920 - MLT1B LTR MaLR 0 390 160 2427 93 3 0 chr3 1930238 1930548 -216106610 - AluSq SINE Alu -2 311 1 2203 137 44 34 chr3 1930548 1930710 -216106448 - MLT1B LTR MaLR -230 160 1 514 343 0 0 chr3 1930871 1931014 -216106144 - MIR3 SINE MIR -23 185 43 213 321 0 0 chr3 1931726 1931782 -216105376 - L2 LINE L2 -5 3308 3253 843 233 110 8 chr3 1932189 1932425 -216104733 - MIR SINE MIR 0 262 3 242 289 47 39 chr3 1932426 1932554 -216104604 - L2 LINE L2 -494 2820 2692 1793 166 7 7 chr3 1933127 1933423 -216103735 + AluJo SINE Alu 5 300 -12 415 279 144 19 chr3 1933732 1933940 -216103218 - L2 LINE L2 -12 3301 3068 324 278 107 47 chr3 1934711 1934880 -216102278 - MIR3 SINE MIR -7 201 23 4720 184 57 16 chr3 1935076 1936162 -216100996 - L1MC4 LINE L1 -5 8037 6907 1000 288 88 22 chr3 1936213 1936457 -216100701 - LTR16C LTR ERVL -22 469 192 2182 165 93 27 chr3 1936457 1936931 -216100227 + MLT1D LTR MaLR 1 505 0 1000 288 88 22 chr3 1936931 1937051 -216100107 - LTR16C LTR ERVL -299 192 81 2690 80 11 16 chr3 1937993 1938369 -216098789 - THE1C LTR MaLR 0 375 2 180 324 25 88 chr3 1938434 1938718 -216098440 + L2 LINE L2 2711 2976 -338 244 295 16 0 chr3 1938880 1938941 -216098217 + L2 LINE L2 3206 3267 -5 448 303 68 19 chr3 1939024 1939110 -216098048 + MIR3 SINE MIR 33 113 -95 20476 58 1 18 chr3 1939110 1942567 -216094591 + L1PA5 LINE L1 2698 6145 -9 448 303 68 19 chr3 1942567 1942642 -216094516 + MIR3 SINE MIR 113 202 -6 562 266 128 21 chr3 1943185 1943373 -216093785 + MIR SINE MIR 18 225 -37 240 381 49 69 chr3 1943387 1943836 -216093322 - L2 LINE L2 -8 3264 2825 189 133 0 0 chr3 1943866 1943896 -216093262 - L2 LINE L2 -4 3309 3280 234 293 73 0 chr3 1943903 1943985 -216093173 - MIR SINE MIR -95 167 80 3042 144 26 0 chr3 1944005 1944505 -216092653 - L1PA16 LINE L1 -2 6164 5652 1339 107 9 0 chr3 1944505 1944721 -216092437 + L1P4 LINE L1 5377 5594 -572 293 328 49 16 chr3 1945049 1945171 -216091987 - MIR SINE MIR -105 157 32 6410 256 85 48 chr3 1945392 1947811 -216089347 + L2 LINE L2 450 2958 -356 858 176 4 106 chr3 1947812 1948039 -216089119 + MER3 DNA MER1_type 6 209 0 979 262 19 52 chr3 1948048 1948372 -216088786 + L2 LINE L2 2966 3278 -35 262 274 16 0 chr3 1948565 1948627 -216088531 + L2 LINE L2 3136 3198 -74 979 157 0 0 chr3 1950394 1950547 -216086611 + FRAM SINE Alu 21 173 -3 377 224 115 51 chr3 1951090 1951246 -216085912 + MIR3 SINE MIR 40 205 -3 762 289 62 55 chr3 1951741 1952194 -216084964 - MLT1K LTR MaLR -64 524 69 834 286 44 8 chr3 1952368 1952620 -216084538 + MIR SINE MIR 2 262 0 289 341 12 0 chr3 1952623 1952708 -216084450 - MIR SINE MIR -93 115 30 630 297 39 0 chr3 1953874 1954056 -216083102 - MIR SINE MIR -48 214 26 2645 171 92 14 chr3 1954119 1954629 -216082529 - MER44D DNA MER2_type 0 605 1 270 383 87 0 chr3 1954703 1954886 -216082272 - MIR SINE MIR 0 262 64 1197 252 20 17 chr3 1954896 1955198 -216081960 + LTR16C LTR ERVL 189 491 0 22 0 0 0 chr3 1956068 1956090 -216081068 + AT_rich Low_complexity Low_complexity 1 22 0 2186 107 3 7 chr3 1956179 1956469 -216080689 + AluSc SINE Alu 1 289 -20 189 0 0 0 chr3 1956871 1956892 -216080266 + (T)n Simple_repeat Simple_repeat 1 21 0 543 285 21 57 chr3 1958016 1958051 -216079107 + MIR3 SINE MIR 19 54 -154 1221 186 91 96 chr3 1958051 1958449 -216078709 + MSTD LTR MaLR 1 396 0 543 285 21 57 chr3 1958449 1958606 -216078552 + MIR3 SINE MIR 54 204 -4 43 47 0 0 chr3 1958621 1958685 -216078473 + AT_rich Low_complexity Low_complexity 1 64 0 25973 107 10 49 chr3 1959283 1965739 -216071419 - L1PA7 LINE L1 0 6154 12 24 32 0 0 chr3 1966314 1966345 -216070813 + AT_rich Low_complexity Low_complexity 1 31 0 564 295 84 40 chr3 1966447 1966698 -216070460 + MIR SINE MIR 1 262 0 372 273 23 34 chr3 1966823 1966999 -216070159 - MER104 DNA Tc2 0 180 7 269 272 65 33 chr3 1967248 1967340 -216069818 - L3 LINE CR1 -7 1570 1476 402 275 261 24 chr3 1967931 1968142 -216069016 - MIR SINE MIR 0 262 2 29 0 0 0 chr3 1968608 1968637 -216068521 + AT_rich Low_complexity Low_complexity 1 29 0 11466 35 19 3 chr3 1968637 1970819 -216066339 - L1PA3 LINE L1 -3 6152 3948 15301 34 1 0 chr3 1970819 1972785 -216064373 + L1PA3 LINE L1 1965 3932 -2214 525 111 0 22 chr3 1972901 1972991 -216064167 + MER53 DNA DNA 102 189 0 1819 196 123 5 chr3 1972991 1973389 -216063769 + MLT1F1 LTR MaLR 123 567 0 2059 111 26 65 chr3 1973529 1973916 -216063242 + THE1C LTR MaLR 1 372 -3 21 71 0 0 chr3 1973999 1974041 -216063117 + AT_rich Low_complexity Low_complexity 1 42 0 232 298 57 79 chr3 1974072 1974242 -216062916 - MIR SINE MIR -56 206 32 2192 123 0 3 chr3 1974384 1974685 -216062473 + AluSg SINE Alu 1 300 -10 2191 148 0 0 chr3 1977166 1977476 -216059682 - AluSx SINE Alu -2 310 1 317 261 114 34 chr3 1978133 1978307 -216058851 - MIR3 SINE MIR -6 202 13 * 541 327 128 0 chr3 1978255 1978466 -216058692 + MIR SINE MIR 23 260 -2 333 238 60 24 chr3 1979116 1979200 -216057958 - MIR SINE MIR -157 105 19 321 26 0 0 chr3 1979379 1979417 -216057741 + (CA)n Simple_repeat Simple_repeat 1 38 0 2386 81 35 3 chr3 1980111 1980455 -216056703 + THE1A LTR MaLR 1 355 0 705 316 50 11 chr3 1981322 1981683 -216055475 + LTR16A LTR ERVL 1 375 -75 658 291 100 9 chr3 1981894 1982114 -216055044 + MIR SINE MIR 23 262 0 1226 83 52 5 chr3 1982265 1982458 -216054700 + MLT2A1 LTR ERVL 3 204 -240 5093 83 0 0 chr3 1982458 1983153 -216054005 - L1PA4 LINE L1 -5450 696 2 * 36236 38 4 4 chr3 1983146 1988619 -216048539 + L1PA4 LINE L1 685 6152 -3 1490 97 26 4 chr3 1988656 1988882 -216048276 + MLT2A1 LTR ERVL 214 444 0 428 257 60 49 chr3 1989420 1989632 -216047526 + MLT1L LTR MaLR 366 605 -8 302 302 7 64 chr3 1989732 1989858 -216047300 - MIR3 SINE MIR -41 167 45 288 185 37 0 chr3 1989861 1989915 -216047243 - L2 LINE L2 0 3272 3217 269 313 86 31 chr3 1990773 1990901 -216046257 + MER5A DNA MER1_type 55 189 0 * 279 215 51 51 chr3 1990901 1990955 -216046203 - MIR3 SINE MIR -47 161 108 189 345 18 0 chr3 1991149 1991204 -216045954 - L2 LINE L2 -17 3296 3241 606 297 109 17 chr3 1993969 1994208 -216042950 + MIR SINE MIR 2 262 0 195 328 50 34 chr3 1994291 1994410 -216042748 - MIR SINE MIR -95 167 47 189 203 68 0 chr3 1995876 1995935 -216041223 + L2 LINE L2 1644 1706 -1608 588 279 66 44 chr3 1996049 1996368 -216040790 + MLT1I LTR MaLR 63 388 -21 1393 296 84 32 chr3 1996410 1997028 -216040130 + L2 LINE L2 1801 2450 -864 1267 188 26 0 chr3 1997029 1997258 -216039900 + MLT1C LTR MaLR 233 467 0 378 266 64 0 chr3 1999818 1999912 -216037246 - MIR SINE MIR -116 146 47 479 283 20 26 chr3 2000211 2000363 -216036795 - MIR3 SINE MIR -24 184 34 484 271 33 20 chr3 2001344 2001495 -216035663 - MIR3 SINE MIR -16 192 40 530 343 41 0 chr3 2001501 2001720 -216035438 - LTR16C LTR ERVL 0 491 264 2451 173 70 10 chr3 2002063 2002549 -216034609 - MLT2B2 LTR ERVL 0 515 1 2587 169 25 17 chr3 2002549 2003215 -216033943 - ERVL LTR ERVL 0 5654 5007 553 163 0 0 chr3 2003215 2003307 -216033851 - MLT2B1 LTR ERVL -428 92 1 539 287 80 49 chr3 2003440 2003764 -216033394 - MLT1K LTR MaLR 0 588 255 680 258 62 0 chr3 2003820 2003998 -216033160 - MER5A DNA MER1_type 0 189 1 421 141 16 132 chr3 2004022 2004143 -216033015 - MLT1K LTR MaLR -448 107 1 399 317 36 22 chr3 2004191 2004547 -216032611 + L1MEc LINE L1 1294 1654 -4742 2696 279 38 27 chr3 2004557 2005446 -216031712 + L1MEc LINE L1 3032 3946 -2269 1673 188 0 24 chr3 2005446 2005734 -216031424 + AluJo SINE Alu 11 291 -21 2696 279 38 27 chr3 2005734 2006340 -216030818 + L1MEc LINE L1 3946 4544 -1671 4913 227 42 16 chr3 2006342 2008189 -216028969 + L1MCa LINE L1 575 2662 -3945 1268 235 40 0 chr3 2008200 2008595 -216028563 + L1MCa LINE L1 3308 3718 -2708 1665 56 8 0 chr3 2008601 2008835 -216028323 + L1P LINE L1 4872 5107 -1039 213 136 45 0 chr3 2008835 2008901 -216028257 + (TA)n Simple_repeat Simple_repeat 2 70 0 6809 62 5 0 chr3 2008903 2010394 -216026764 - L1PA6 LINE L1 -13 6141 4643 5344 39 5 3 chr3 2010394 2011040 -216026118 - L1PA5 LINE L1 -2 6152 5506 28060 97 7 8 chr3 2011042 2015703 -216021455 - L1PA6 LINE L1 -1494 4652 1 320 248 0 0 chr3 2015742 2015830 -216021328 + L1PB4 LINE L1 6072 6149 -7 14183 159 29 8 chr3 2015845 2017903 -216019255 - L1MA1 LINE L1 0 7721 5557 1838 183 0 3 chr3 2017903 2018204 -216018954 - AluSx SINE Alu -12 300 1 14183 159 29 8 chr3 2018204 2019950 -216017208 - L1MA1 LINE L1 -2164 5557 3849 1859 209 57 90 chr3 2019951 2020516 -216016642 + MLT2B3 LTR ERVL 1 546 -8 10552 130 24 7 chr3 2020520 2022456 -216014702 - L1MA1 LINE L1 -3713 3852 1881 1761 163 14 20 chr3 2022457 2022801 -216014357 + L1MC1 LINE L1 5272 5613 -720 2296 169 11 13 chr3 2022804 2023253 -216013905 + L1MA7 LINE L1 5842 6289 -2 3822 153 28 36 chr3 2023270 2023693 -216013465 + L1MC1 LINE L1 5595 6011 -322 2046 145 0 7 chr3 2023693 2023997 -216013161 - AluSx SINE Alu -10 302 1 3822 153 28 36 chr3 2023997 2024318 -216012840 + L1MC1 LINE L1 6011 6333 0 634 241 42 87 chr3 2024323 2024725 -216012433 + L1ME3A LINE L1 4475 4858 -1288 244 300 85 0 chr3 2024732 2024862 -216012296 + L1ME3A LINE L1 5006 5146 -1000 4443 133 27 13 chr3 2024863 2025612 -216011546 + Tigger2 DNA MER2_type 1 759 -1959 1117 167 73 29 chr3 2025667 2025852 -216011306 + Tigger2 DNA MER2_type 2453 2653 -55 2262 116 0 0 chr3 2025852 2026154 -216011004 - AluSq SINE Alu -11 302 1 1117 167 73 29 chr3 2026154 2026213 -216010945 + Tigger2 DNA MER2_type 2653 2708 0 696 257 32 24 chr3 2026215 2026532 -216010626 + L1ME3A LINE L1 5148 5468 -696 313 236 67 0 chr3 2026540 2026629 -216010529 - L1MA9 LINE L1 -38 6274 6180 2074 123 0 10 chr3 2026629 2026921 -216010237 + AluSx SINE Alu 1 289 -23 1044 123 21 48 chr3 2026936 2027143 -216010015 + AluSq SINE Alu 132 313 0 2722 183 57 37 chr3 2027170 2027786 -216009372 - L1MA9 LINE L1 -181 6131 5504 1870 242 83 44 chr3 2027774 2028435 -216008723 + L1ME3A LINE L1 5448 6134 -36 * 23 54 0 0 chr3 2029024 2029061 -216008097 + AT_rich Low_complexity Low_complexity 1 37 0 188 208 75 0 chr3 2029096 2029149 -216008009 - MIR SINE MIR -107 155 99 328 277 149 0 chr3 2029151 2029245 -216007913 + MIR3 SINE MIR 89 196 -12 236 216 91 80 chr3 2030200 2030288 -216006870 - MIR SINE MIR -68 140 52 234 219 0 0 chr3 2030462 2030526 -216006632 + (TA)n Simple_repeat Simple_repeat 2 65 0 931 292 67 49 chr3 2031548 2032058 -216005100 - MLT1K LTR MaLR -60 528 10 26 74 0 0 chr3 2032335 2032389 -216004769 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr3 2032717 2032747 -216004411 + AT_rich Low_complexity Low_complexity 1 30 0 2286 107 0 10 chr3 2032933 2033242 -216003916 - AluSx SINE Alu -6 306 1 194 283 110 55 chr3 2034842 2034987 -216002171 + MIR3 SINE MIR 44 196 -12 332 323 26 42 chr3 2035140 2035332 -216001826 + MIR SINE MIR 1 189 -73 2235 120 17 6 chr3 2035551 2035908 -216001250 + MER46B DNA MER2_type 1 236 0 207 306 10 31 chr3 2036632 2036730 -216000428 - MIR SINE MIR 0 262 167 42718 32 21 2 chr3 2036754 2042788 -215994370 + L1HS LINE L1 3 6155 0 266 268 85 12 chr3 2042793 2042875 -215994283 - MIR SINE MIR -133 129 42 936 300 129 12 chr3 2042945 2043435 -215993723 + MLT1H1 LTR MaLR 1 547 -8 258 200 0 33 chr3 2043663 2043723 -215993435 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 545 312 41 45 chr3 2044543 2044812 -215992346 + MLT1K LTR MaLR 317 584 -4 2399 43 13 0 chr3 2044892 2045219 -215991939 + L1PA3 LINE L1 5849 6179 0 2278 89 0 40 chr3 2045362 2045687 -215991471 - AluSx SINE Alu 0 312 1 342 0 0 0 chr3 2046610 2046648 -215990510 + (A)n Simple_repeat Simple_repeat 1 38 0 1171 266 110 39 chr3 2046967 2047629 -215989529 - L2 LINE L2 -6 3307 2608 1085 214 57 21 chr3 2047634 2047965 -215989193 - L1MEc LINE L1 -4330 2066 1724 7022 26 0 0 chr3 2047968 2048780 -215988378 - L1PA3 LINE L1 0 6155 5344 3374 300 55 24 chr3 2048782 2050377 -215986781 - L1MEc LINE L1 -4675 1721 77 324 227 57 102 chr3 2050380 2050556 -215986602 - MIR3 SINE MIR -22 186 19 405 157 0 14 chr3 2050581 2050651 -215986507 - MLT1C LTR MaLR -1 466 398 1910 150 0 0 chr3 2050657 2050931 -215986227 + AluSx SINE Alu 1 274 -38 807 66 0 0 chr3 2050931 2051037 -215986121 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 900 151 0 0 chr3 2051048 2051174 -215985984 + AluSg/x SINE Alu 146 271 -39 234 105 0 0 chr3 2051180 2051218 -215985940 + (GA)n Simple_repeat Simple_repeat 1 38 0 1413 228 27 49 chr3 2051222 2051630 -215985528 - MLT1C LTR MaLR -62 405 7 346 268 167 24 chr3 2053002 2053170 -215983988 - MIR3 SINE MIR -7 201 10 1186 295 164 15 chr3 2053193 2054033 -215983125 + L2 LINE L2 2116 3082 -231 2238 110 7 0 chr3 2054231 2054531 -215982627 - AluSq SINE Alu -11 302 1 1046 173 0 0 chr3 2054564 2054726 -215982432 - FAM SINE Alu -12 163 2 337 322 77 11 chr3 2058023 2058206 -215978952 + L2 LINE L2 3118 3312 -1 473 198 16 24 chr3 2061294 2061420 -215975738 + L1ME4a LINE L1 5993 6117 -4 21 0 0 0 chr3 2061966 2061987 -215975171 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 2062243 2062264 -215974894 + AT_rich Low_complexity Low_complexity 1 21 0 355 370 79 46 chr3 2062929 2063232 -215973926 - L2 LINE L2 -18 3254 2942 225 273 116 88 chr3 2063391 2063607 -215973551 + L2 LINE L2 2925 3146 -126 1084 215 66 78 chr3 2064614 2064635 -215972523 - MLT1B LTR MaLR 0 390 370 1942 185 25 3 chr3 2064635 2064992 -215972166 - MLT1A1 LTR MaLR 0 365 1 1084 215 66 78 chr3 2064992 2065365 -215971793 - MLT1B LTR MaLR -20 370 1 623 87 19 0 chr3 2065373 2065476 -215971682 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 554 149 0 9 chr3 2065476 2065583 -215971575 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 208 260 0 0 chr3 2065752 2065802 -215971356 - L2 LINE L2 -8 3305 3256 465 269 51 32 chr3 2065883 2066039 -215971119 - MER5B DNA MER1_type -1 177 19 1744 238 97 33 chr3 2066999 2067638 -215969520 + MER20B DNA MER1_type 96 775 -8 214 208 0 38 chr3 2067949 2068002 -215969156 - MIR SINE MIR -51 211 161 10018 86 13 1 chr3 2068024 2070190 -215966968 - L1PA7 LINE L1 -2 6152 3969 8740 98 30 9 chr3 2070190 2071578 -215965580 + L1PA7 LINE L1 2546 3963 -2183 212 348 102 0 chr3 2071582 2071700 -215965458 - MIR SINE MIR -108 154 25 499 257 22 15 chr3 2072376 2072512 -215964646 + MER117 DNA MER1_type 8 144 -53 275 297 0 0 chr3 2072597 2072661 -215964497 - MIR SINE MIR -64 144 81 2805 19 0 0 chr3 2072662 2072975 -215964183 + AluYb8 SINE Alu 1 313 -5 3808 90 8 4 chr3 2073006 2073538 -215963620 + L1PA14 LINE L1 5627 6160 -1 243 290 40 10 chr3 2073627 2073727 -215963431 - MIR SINE MIR -23 239 137 291 65 87 0 chr3 2074992 2075038 -215962120 + MADE1 DNA Mariner 4 53 -27 372 295 132 44 chr3 2075111 2075252 -215961906 - MIR SINE MIR -1 261 91 2387 106 3 0 chr3 2075252 2075563 -215961595 + AluSp SINE Alu 1 312 -1 372 295 132 44 chr3 2075563 2075648 -215961510 - MIR SINE MIR -171 91 15 192 77 0 0 chr3 2076012 2076038 -215961120 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 225 302 58 12 chr3 2076653 2076739 -215960419 + MIR SINE MIR 25 114 -148 364 325 98 0 chr3 2076999 2077162 -215959996 - MIR SINE MIR -1 261 83 415 126 11 23 chr3 2077589 2077676 -215959482 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 1038 265 63 66 chr3 2077850 2078292 -215958866 + L2 LINE L2 2873 3313 0 215 224 17 17 chr3 2078297 2078355 -215958803 - MIR SINE MIR -123 139 82 283 306 231 27 chr3 2078381 2078675 -215958483 + L2 LINE L2 2910 3263 -50 217 368 0 0 chr3 2078700 2078776 -215958382 + MIR SINE MIR 185 260 -2 934 158 20 0 chr3 2079705 2079851 -215957307 - FAM SINE Alu -14 171 23 294 264 0 11 chr3 2080736 2080827 -215956331 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 486 0 0 0 chr3 2081145 2081199 -215955959 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr3 2081515 2081544 -215955614 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1270 166 107 112 chr3 2081558 2081950 -215955208 + MLT1B LTR MaLR 1 390 0 209 290 108 21 chr3 2082554 2082647 -215954511 + L3 LINE CR1 1383 1483 -94 * 234 318 91 45 chr3 2082640 2082772 -215954386 - L2 LINE L2 0 3313 3176 2219 108 0 3 chr3 2083158 2083454 -215953704 + AluSc SINE Alu 2 296 -13 322 304 77 0 chr3 2084221 2084389 -215952769 + L1ME4a LINE L1 5636 5816 -305 414 275 133 38 chr3 2084476 2084716 -215952442 + L1ME4a LINE L1 5856 6118 -3 287 309 11 11 chr3 2084891 2084985 -215952173 + MIR3 SINE MIR 109 202 -6 315 281 22 50 chr3 2085159 2085298 -215951860 - MIR3 SINE MIR -20 188 54 5166 146 9 25 chr3 2085571 2086673 -215950485 + L1PA16 LINE L1 4686 5762 -404 2216 129 0 37 chr3 2086673 2087022 -215950136 - MER1B DNA MER1_type 0 337 2 5166 146 9 25 chr3 2087022 2087376 -215949782 + L1PA16 LINE L1 5762 6120 -46 7133 128 52 2 chr3 2087389 2088608 -215948550 - HSMAR2 DNA Mariner -22 1280 2 420 307 14 43 chr3 2088759 2088899 -215948259 + MIR3 SINE MIR 4 139 -69 331 328 0 73 chr3 2089035 2089212 -215947946 - L2 LINE L2 -227 3045 2882 215 200 122 78 chr3 2090148 2090238 -215946920 + L3 LINE CR1 295 388 -1189 3494 42 0 5 chr3 2090727 2091156 -215946002 - L1PA5 LINE L1 0 6154 5728 3621 35 29 3 chr3 2091158 2091794 -215945364 + L1PA5 LINE L1 5087 5735 -419 1556 201 223 2 chr3 2091845 2092257 -215944901 - MLT1F LTR MaLR 0 542 40 193 194 0 0 chr3 2092297 2092333 -215944825 - L2 LINE L2 -9 3304 3269 274 336 141 32 chr3 2092789 2093336 -215943822 - L2 LINE L2 -7 3306 2703 2162 113 0 7 chr3 2093889 2094191 -215942967 + AluSx SINE Alu 1 300 -12 631 293 96 29 chr3 2094629 2094974 -215942184 - LTR16C LTR ERVL -34 457 90 22 35 0 0 chr3 2095115 2095144 -215942014 + AT_rich Low_complexity Low_complexity 1 29 0 585 259 113 29 chr3 2095413 2095652 -215941506 + MIR SINE MIR 1 259 -3 444 314 182 0 chr3 2095859 2096079 -215941079 + MIR SINE MIR 3 262 0 364 222 99 0 chr3 2096086 2096167 -215940991 - L2 LINE L2 -4 3268 3180 204 216 0 0 chr3 2096301 2096352 -215940806 + GA-rich Low_complexity Low_complexity 4 54 0 387 333 80 12 chr3 2096903 2097065 -215940093 - MIR SINE MIR -56 206 34 734 165 0 24 chr3 2097223 2097341 -215939817 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 2097341 2097382 -215939776 + (CA)n Simple_repeat Simple_repeat 2 42 0 829 222 46 62 chr3 2098242 2098323 -215938835 + MER33 DNA MER1_type 1 82 -2503 1865 189 38 53 chr3 2098323 2098773 -215938385 + LTR47B LTR ERVL 1 443 0 829 222 46 62 chr3 2098773 2098997 -215938161 + MER33 DNA MER1_type 82 301 -23 229 330 43 0 chr3 2099950 2100065 -215937093 + MIR3 SINE MIR 37 156 -52 608 274 18 50 chr3 2100619 2100838 -215936320 - MIR SINE MIR -20 242 31 232 388 106 0 chr3 2101878 2102066 -215935092 - MIR SINE MIR -2 260 53 229 314 108 29 chr3 2102120 2102222 -215934936 + MIR SINE MIR 34 143 -65 326 262 172 21 chr3 2102263 2102408 -215934750 + MIR SINE MIR 36 202 -60 394 56 0 0 chr3 2102413 2102467 -215934691 - MLT2A1 LTR ERVL 0 444 391 321 310 0 0 chr3 2102468 2102555 -215934603 - L1MC4 LINE L1 -1342 6700 6614 318 292 11 0 chr3 2102527 2102616 -215934542 + L1MC4 LINE L1 6614 6703 -1339 * 208 151 57 0 chr3 2102617 2102670 -215934488 + (TA)n Simple_repeat Simple_repeat 2 57 0 2083 145 5 30 chr3 2102683 2103056 -215934102 - THE1B LTR MaLR 0 364 1 233 238 71 36 chr3 2103340 2103424 -215933734 + MIR SINE MIR 96 182 -80 532 276 13 26 chr3 2103824 2103980 -215933178 + MIR SINE MIR 2 155 -107 2048 234 90 22 chr3 2104013 2104590 -215932568 + MLT1E2 LTR MaLR 1 616 -10 286 235 82 0 chr3 2104819 2104904 -215932254 - MIR SINE MIR -65 197 106 234 307 183 7 chr3 2105492 2105645 -215931513 + MER5A DNA MER1_type 9 188 -1 853 281 139 22 chr3 2106200 2106652 -215930506 - MLT1D LTR MaLR 0 505 1 231 233 97 29 chr3 2106763 2106866 -215930292 + MIR SINE MIR 139 248 -14 216 0 0 0 chr3 2107879 2107903 -215929255 + (A)n Simple_repeat Simple_repeat 1 24 0 5627 203 44 8 chr3 2108519 2109826 -215927332 - L1PA12 LINE L1 -4827 2754 1688 3810 0 0 0 chr3 2110251 2110693 -215926465 - L1HS LINE L1 0 6155 5714 1189 106 4 65 chr3 2110739 2110768 -215926390 + L1MA9 LINE L1 6082 6111 -201 1590 194 31 17 chr3 2110768 2111057 -215926101 + AluJo SINE Alu 1 293 -19 1189 106 4 65 chr3 2111057 2111272 -215925886 + L1MA9 LINE L1 6111 6311 -1 679 291 131 43 chr3 2111467 2111842 -215925316 + L3 LINE CR1 623 1030 -547 226 333 0 0 chr3 2111897 2111954 -215925204 + L3 LINE CR1 1409 1465 -112 2232 126 3 0 chr3 2112091 2112401 -215924757 - AluSx SINE Alu -1 311 1 281 297 55 55 chr3 2113080 2113245 -215923913 + MIR SINE MIR 52 216 -46 295 284 35 71 chr3 2113280 2113311 -215923847 - MIR SINE MIR -58 204 173 2395 133 22 38 chr3 2113311 2113349 -215923809 + MER65A LTR ERV1 2 39 -406 204 97 0 0 chr3 2113349 2113380 -215923778 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2395 133 22 38 chr3 2113380 2113792 -215923366 + MER65A LTR ERV1 39 445 0 295 284 35 71 chr3 2113792 2113901 -215923257 - MIR SINE MIR -89 173 69 405 281 96 46 chr3 2114008 2114353 -215922805 + LTR33 LTR ERVL 93 454 -67 329 291 45 27 chr3 2116004 2116050 -215921108 + MIR SINE MIR 95 139 -123 1211 206 75 54 chr3 2116050 2116400 -215920758 + MLT2C1 LTR ERVL 1 361 -36 411 56 0 0 chr3 2116400 2116454 -215920704 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1211 206 75 54 chr3 2116454 2116492 -215920666 + MLT2C1 LTR ERVL 361 397 0 329 291 45 27 chr3 2116492 2116555 -215920603 + MIR SINE MIR 139 206 -56 829 224 0 12 chr3 2116933 2117098 -215920060 + FRAM SINE Alu 1 162 -14 504 253 93 0 chr3 2117346 2117496 -215919662 + MLT1J2 LTR MaLR 18 181 -269 983 293 96 48 chr3 2117508 2118376 -215918782 + L2 LINE L2 2357 3253 -60 187 351 13 0 chr3 2118377 2118454 -215918704 + MIR3 SINE MIR 84 161 -47 616 298 46 21 chr3 2118890 2119128 -215918030 - MIR SINE MIR -16 246 3 187 352 14 14 chr3 2119177 2119248 -215917910 + L2 LINE L2 2991 3061 -211 287 319 220 5 chr3 2119320 2119511 -215917647 - MIR SINE MIR -3 259 28 223 363 124 0 chr3 2119829 2119942 -215917216 + L2 LINE L2 3183 3309 -4 742 301 153 17 chr3 2120105 2120464 -215916694 - MLT1I LTR MaLR 0 409 2 4280 164 47 6 chr3 2120499 2121287 -215915871 - LTR1B LTR ERV1 0 826 7 291 195 158 0 chr3 2121399 2121481 -215915677 + MIR SINE MIR 91 185 -77 2045 141 0 22 chr3 2121489 2121808 -215915350 + AluJb SINE Alu 1 312 0 200 239 22 0 chr3 2121855 2121901 -215915257 + L2 LINE L2 3210 3256 -16 1615 190 22 28 chr3 2123042 2123409 -215913749 - MLT1A1 LTR MaLR 0 467 1 405 141 256 0 chr3 2123756 2123834 -215913324 - Tigger1 DNA MER2_type 0 2418 2321 * 4549 135 7 0 chr3 2123832 2124559 -215912599 - Tigger1 DNA MER2_type -1659 759 28 536 287 23 6 chr3 2125813 2125987 -215911171 - MIR SINE MIR -10 252 76 242 344 10 0 chr3 2126308 2126404 -215910754 - MIR SINE MIR 0 262 166 1912 162 43 94 chr3 2126422 2126501 -215910657 - MLT1D LTR MaLR 0 505 424 1711 191 47 7 chr3 2126501 2126799 -215910359 - AluJo SINE Alu -2 310 1 1912 162 43 94 chr3 2126799 2127249 -215909909 - MLT1D LTR MaLR -81 424 3 27 29 0 0 chr3 2127388 2127422 -215909736 + AT_rich Low_complexity Low_complexity 1 34 0 1426 211 68 4 chr3 2127422 2127702 -215909456 + AluJo SINE Alu 1 298 -14 303 269 17 25 chr3 2127702 2127769 -215909389 + L1ME4a LINE L1 6001 6068 -53 2409 78 0 16 chr3 2127769 2128076 -215909082 - AluY SINE Alu -9 302 1 303 269 17 25 chr3 2128076 2128127 -215909031 + L1ME4a LINE L1 6068 6118 -3 365 321 14 29 chr3 2128531 2128671 -215908487 + MIR SINE MIR 52 189 -73 224 161 195 81 chr3 2128848 2128935 -215908223 - MIR SINE MIR -146 116 20 234 250 0 50 chr3 2128988 2129048 -215908110 - MIR SINE MIR -133 75 19 * 849 267 49 20 chr3 2129019 2129266 -215907892 - MIR SINE MIR -7 255 2 361 318 91 86 chr3 2130615 2131212 -215905946 - L2 LINE L2 -2 3270 2652 546 226 80 15 chr3 2131332 2131469 -215905689 + MIR SINE MIR 9 154 -108 1077 234 36 39 chr3 2131476 2131784 -215905374 - MER46C DNA MER2_type -20 318 12 364 177 63 0 chr3 2131795 2131874 -215905284 + MIR SINE MIR 153 236 -26 265 235 59 0 chr3 2131938 2132006 -215905152 + MIR3 SINE MIR 126 197 -11 1801 150 119 0 chr3 2132089 2132197 -215904961 - MER57A LTR ERV1 0 403 309 3348 129 2 2 chr3 2132197 2132694 -215904464 + LOR1a LTR ERV1 1 497 0 1801 150 119 0 chr3 2132694 2132945 -215904213 - MER57A LTR ERV1 -94 309 1 339 255 0 103 chr3 2133294 2133439 -215903719 + MIR SINE MIR 77 206 -56 3457 113 10 8 chr3 2133483 2133987 -215903171 - MER84 LTR ERV1 0 507 3 3184 138 123 7 chr3 2134129 2134730 -215902428 + LTR51 LTR ERV1 1 671 0 190 239 0 22 chr3 2134753 2134799 -215902359 - MIR SINE MIR -36 226 182 188 233 0 0 chr3 2135017 2135060 -215902098 - MIR SINE MIR -102 160 118 3914 132 16 3 chr3 2135075 2135702 -215901456 + MER41B LTR ERV1 1 635 0 251 119 0 0 chr3 2135711 2135753 -215901405 + Alu SINE Alu 187 228 -73 227 211 135 0 chr3 2135758 2135810 -215901348 - MIR SINE MIR -199 63 5 329 291 48 0 chr3 2136687 2136790 -215900368 - MIR SINE MIR 0 262 155 696 264 40 54 chr3 2136892 2137168 -215899990 - LTR33 LTR ERVL -249 272 1 1953 164 67 42 chr3 2137417 2137867 -215899291 + LOR1b LTR ERV1 1 461 0 635 333 87 45 chr3 2138223 2138601 -215898557 - ERVL LTR ERVL -661 4866 4431 371 301 103 7 chr3 2138951 2139087 -215898071 - MIR SINE MIR -108 154 6 1293 148 40 37 chr3 2139362 2139687 -215897471 - MER33 DNA MER1_type -5 319 1 180 0 0 0 chr3 2139787 2139807 -215897351 + (GAA)n Simple_repeat Simple_repeat 2 21 0 224 296 133 20 chr3 2139909 2140007 -215897151 - MIR SINE MIR -134 128 20 183 80 0 0 chr3 2140014 2140039 -215897119 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3110 184 50 72 chr3 2140339 2140667 -215896491 + MER45B DNA AcHobo 2 336 -704 5327 80 27 1 chr3 2140667 2141414 -215895744 + MER4E LTR ERV1 1 766 0 3110 184 50 72 chr3 2141414 2141659 -215895499 + MER45B DNA AcHobo 336 554 -486 2220 109 13 0 chr3 2141659 2141961 -215895197 - AluY SINE Alu -5 306 1 3110 184 50 72 chr3 2141961 2142200 -215894958 + MER45B DNA AcHobo 554 797 -243 32516 97 8 38 chr3 2142211 2147748 -215889410 + L1PA6 LINE L1 11 5336 -818 2426 62 0 16 chr3 2147748 2148053 -215889105 + AluY SINE Alu 1 300 -11 32516 97 8 38 chr3 2148053 2148841 -215888317 + L1PA6 LINE L1 5336 6146 -8 1305 141 32 8 chr3 2148841 2149090 -215888068 + MER45B DNA AcHobo 786 1040 0 340 289 0 10 chr3 2149105 2149202 -215887956 - MER117 DNA MER1_type -34 163 68 768 230 57 97 chr3 2149557 2149641 -215887517 - MIR SINE MIR -7 255 169 674 140 0 113 chr3 2149641 2149791 -215887367 + FLAM_C SINE Alu 1 133 0 768 230 57 97 chr3 2149791 2149954 -215887204 - MIR SINE MIR -93 169 18 245 195 0 0 chr3 2150297 2150338 -215886820 - L3 LINE CR1 -10 1567 1527 343 253 142 37 chr3 2150339 2150501 -215886657 + MER117 DNA MER1_type 1 179 -18 568 343 55 17 chr3 2150508 2150744 -215886414 + MIR SINE MIR 2 246 -16 255 286 39 26 chr3 2150842 2150919 -215886239 - MIR3 SINE MIR -48 160 83 387 255 33 72 chr3 2150941 2151094 -215886064 + MIR3 SINE MIR 35 181 -27 303 276 0 13 chr3 2151785 2151861 -215885297 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 752 261 71 14 chr3 2151878 2152089 -215885069 + MIR SINE MIR 3 225 -37 201 250 44 59 chr3 2152135 2152203 -215884955 + L2 LINE L2 1366 1432 -1882 * 370 253 0 141 chr3 2152159 2152329 -215884829 - MIR3 SINE MIR -60 148 3 206 319 160 25 chr3 2152360 2152479 -215884679 + L2 LINE L2 3171 3305 -8 488 294 86 12 chr3 2152565 2152728 -215884430 + MIR SINE MIR 1 175 -87 515 214 26 0 chr3 2152749 2152866 -215884292 + MLT2C1 LTR ERVL 1 120 -277 569 168 81 46 chr3 2153037 2153210 -215883948 + L1MC4 LINE L1 7858 8036 -6 1815 155 3 21 chr3 2153218 2153508 -215883650 + AluJb SINE Alu 3 287 -25 43 47 0 0 chr3 2153513 2153577 -215883581 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr3 2153671 2153700 -215883458 + AT_rich Low_complexity Low_complexity 1 29 0 186 311 90 25 chr3 2154690 2154812 -215882346 - L2 LINE L2 -15 3298 3169 345 234 62 23 chr3 2154907 2155035 -215882123 + HAL1b LINE L1 1216 1348 0 413 193 48 0 chr3 2157367 2157450 -215879708 + MIR3 SINE MIR 82 168 -40 315 264 101 39 chr3 2157477 2157619 -215879539 + MIR SINE MIR 30 145 -63 2208 129 33 30 chr3 2157685 2158048 -215879110 + THE1B LTR MaLR 1 364 0 228 240 72 40 chr3 2158208 2158307 -215878851 + MIR SINE MIR 34 145 -73 399 282 215 19 chr3 2158318 2158527 -215878631 - MIR SINE MIR -1 261 12 228 93 233 0 chr3 2158529 2158572 -215878586 - Charlie1 DNA MER1_type 0 2761 2709 * 453 160 19 19 chr3 2158564 2158670 -215878488 - Charlie1 DNA MER1_type -208 2553 2448 548 279 37 81 chr3 2159446 2159743 -215877415 + L2 LINE L2 2994 3277 -36 226 143 41 20 chr3 2159919 2159968 -215877190 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 502 231 26 8 chr3 2161051 2161168 -215875990 + L2 LINE L2 3154 3272 0 4500 168 37 30 chr3 2161199 2161889 -215875269 + MER6 DNA MER2_type 1 700 -165 1455 119 92 12 chr3 2161889 2162140 -215875018 + AluSg SINE Alu 40 310 0 4500 168 37 30 chr3 2162140 2162308 -215874850 + MER6 DNA MER2_type 700 865 0 247 312 27 54 chr3 2163295 2163481 -215873677 + MIR3 SINE MIR 16 196 -12 612 322 45 25 chr3 2164049 2164294 -215872864 + MIR SINE MIR 13 262 0 271 377 29 58 chr3 2165285 2165561 -215871597 - L2 LINE L2 0 3272 3005 346 262 98 8 chr3 2165582 2165704 -215871454 - MER94 DNA DNA -1 133 1 473 305 145 15 chr3 2167769 2168031 -215869127 - MER102a DNA MER1_type -3 327 32 2338 90 0 7 chr3 2168300 2168610 -215868548 + AluSx SINE Alu 1 308 -4 7082 159 33 43 chr3 2170292 2172739 -215864419 + L1MA6 LINE L1 3791 6214 -86 2215 119 43 27 chr3 2172839 2173208 -215863950 - THE1C LTR MaLR 0 375 1 225 344 47 0 chr3 2173702 2173766 -215863392 + L2 LINE L2 3114 3180 -92 186 137 68 14 chr3 2173845 2173918 -215863240 + GA-rich Low_complexity Low_complexity 2 78 0 2309 112 0 7 chr3 2173950 2174253 -215862905 - AluSx SINE Alu -11 301 1 371 300 106 11 chr3 2174687 2174867 -215862291 - MIR SINE MIR 0 262 66 460 250 75 42 chr3 2175063 2175087 -215862071 + LTR33 LTR ERVL 3 25 -496 2002 142 44 33 chr3 2175087 2175447 -215861711 + THE1B LTR MaLR 1 364 0 460 250 75 42 chr3 2175447 2175634 -215861524 + LTR33 LTR ERVL 25 221 -300 270 56 0 0 chr3 2175697 2175733 -215861425 + (TC)n Simple_repeat Simple_repeat 1 36 0 2725 141 16 22 chr3 2175877 2176387 -215860771 + L1MA7 LINE L1 5613 6119 -172 316 317 178 26 chr3 2176974 2177204 -215859954 - L1MC4a LINE L1 -1928 5880 5616 232 319 11 85 chr3 2178449 2178543 -215858615 - MIR3 SINE MIR -110 98 12 569 256 0 0 chr3 2178702 2178823 -215858335 + FRAM SINE Alu 1 121 -55 242 132 0 0 chr3 2179093 2179131 -215858027 - MER112 DNA MER1_type 0 260 223 17634 44 2 0 chr3 2179141 2181424 -215855734 - L1P LINE L1 -3178 2968 683 5212 32 0 2 chr3 2181424 2182039 -215855119 + L1PA5 LINE L1 5541 6154 0 1190 194 8 25 chr3 2182142 2182379 -215854779 + MER8 DNA MER2_type 7 239 0 304 249 16 124 chr3 2182384 2182470 -215854688 - MER112 DNA MER1_type -88 172 117 2040 88 0 76 chr3 2182470 2182787 -215854371 + AluSc SINE Alu 1 293 -16 304 249 16 124 chr3 2182787 2182893 -215854265 - MER112 DNA MER1_type -143 117 1 1192 77 4 170 chr3 2184114 2184284 -215852874 - L1MA4A LINE L1 -21 6282 6168 1559 186 18 7 chr3 2184284 2184559 -215852599 + AluJo SINE Alu 3 280 -32 1192 77 4 170 chr3 2184559 2184647 -215852511 - L1MA4A LINE L1 -135 6168 6067 3414 159 78 46 chr3 2185935 2186694 -215850464 + LTR1 LTR ERV1 1 783 -2 458 284 50 45 chr3 2187088 2187289 -215849869 - MIR SINE MIR -47 215 14 22 0 0 0 chr3 2188209 2188231 -215848927 + AT_rich Low_complexity Low_complexity 1 22 0 222 276 169 34 chr3 2188564 2188772 -215848386 + MIR SINE MIR 9 251 -11 426 234 89 27 chr3 2189257 2189514 -215847644 + HAL1 LINE L1 981 1253 -1254 254 235 12 47 chr3 2189503 2189588 -215847570 + HAL1 LINE L1 2420 2501 -6 * 398 333 210 26 chr3 2189601 2190186 -215846972 + L2 LINE L2 1784 2476 -838 382 293 110 12 chr3 2190467 2190631 -215846527 + L2 LINE L2 2866 3045 -227 306 50 0 0 chr3 2190732 2190772 -215846386 + (CA)n Simple_repeat Simple_repeat 1 40 0 417 357 51 13 chr3 2191190 2191347 -215845811 + L2 LINE L2 3104 3266 -6 296 356 10 10 chr3 2191857 2191961 -215845197 + MIR SINE MIR 47 150 -112 336 306 36 0 chr3 2192128 2192239 -215844919 + MIR3 SINE MIR 85 199 -9 223 329 12 12 chr3 2192283 2192365 -215844793 - MIR SINE MIR -122 140 59 1616 164 13 33 chr3 2192625 2192752 -215844406 + L1MB5 LINE L1 5590 5718 -456 3022 100 22 2 chr3 2192752 2193204 -215843954 - L1PA13 LINE L1 0 6163 5703 1616 164 13 33 chr3 2193204 2193617 -215843541 + L1MB5 LINE L1 5718 6174 0 457 310 117 29 chr3 2193994 2194275 -215842883 - L2 LINE L2 0 3313 3008 426 328 23 45 chr3 2194664 2194841 -215842317 + MIR3 SINE MIR 1 173 -35 210 368 51 8 chr3 2195950 2196067 -215841091 + MIR SINE MIR 19 140 -68 1008 182 35 5 chr3 2196190 2196393 -215840765 - MER3 DNA MER1_type 0 209 1 529 301 103 66 chr3 2196457 2196712 -215840446 - L3 LINE CR1 -969 608 337 1672 205 0 7 chr3 2196712 2197010 -215840148 - AluJb SINE Alu -16 296 1 529 301 103 66 chr3 2197010 2197073 -215840085 - L3 LINE CR1 -1240 337 278 338 328 93 40 chr3 2197912 2198159 -215838999 + L1MC4 LINE L1 6769 7028 -1014 3368 89 0 11 chr3 2198325 2198774 -215838384 + MLT2A1 LTR ERVL 1 444 0 40792 82 5 9 chr3 2198774 2204452 -215832706 + HERVL-A1-A1 LTR ERVL 1 5654 0 3372 83 0 7 chr3 2204452 2204899 -215832259 + MLT2A1 LTR ERVL 1 444 0 598 232 21 0 chr3 2204899 2205041 -215832117 + ERVL LTR ERVL 548 692 -5072 22954 41 0 0 chr3 2205042 2208670 -215828488 + L1PA5 LINE L1 2524 6151 -3 2206 219 43 13 chr3 2208672 2209298 -215827860 + L1M4 LINE L1 3961 4605 -1541 1269 257 43 104 chr3 2209324 2209903 -215827255 + MER77 LTR ERV1 58 601 -4 2844 191 42 13 chr3 2209923 2210560 -215826598 - MER63C DNA MER1_type -207 723 68 21 0 0 0 chr3 2211920 2211941 -215825217 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 2212063 2212089 -215825069 + AT_rich Low_complexity Low_complexity 1 26 0 879 187 0 0 chr3 2212877 2213016 -215824142 + FRAM SINE Alu 11 149 -27 257 0 30 0 chr3 2213020 2213053 -215824105 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 199 265 0 20 chr3 2213411 2213460 -215823698 - MER5B DNA MER1_type -129 49 2 236 305 93 8 chr3 2213739 2213857 -215823301 + L2 LINE L2 3185 3312 -1 297 213 277 32 chr3 2214983 2215138 -215822020 - MIR3 SINE MIR 0 208 16 * 393 312 153 0 chr3 2215136 2215293 -215821865 + MER5A DNA MER1_type 9 189 0 1642 160 87 3 chr3 2215330 2215617 -215821541 - AluJb SINE Alu -1 311 1 2333 78 20 0 chr3 2216268 2216564 -215820594 + AluY SINE Alu 1 302 -9 308 250 25 12 chr3 2216614 2216694 -215820464 + L2 LINE L2 3233 3313 0 245 314 95 0 chr3 2216743 2216912 -215820246 - L3 LINE CR1 -162 1415 1231 3905 40 0 0 chr3 2217886 2218331 -215818827 - L1PA4 LINE L1 0 6155 5711 3802 9 12 5 chr3 2218331 2218761 -215818397 + L1PA4 LINE L1 5303 5735 -420 193 289 26 53 chr3 2218778 2218854 -215818304 - MIR3 SINE MIR -32 176 103 778 294 23 23 chr3 2219894 2220115 -215817043 - MER58A DNA MER1_type 0 224 4 247 300 65 47 chr3 2220791 2220961 -215816197 - L3 LINE CR1 -59 1518 1346 1552 165 16 41 chr3 2221437 2221630 -215815528 - AluJo SINE Alu -4 308 125 1891 120 49 7 chr3 2221630 2221914 -215815244 + AluSq SINE Alu 1 296 -17 1552 165 16 41 chr3 2221914 2222036 -215815122 - AluJo SINE Alu -187 125 1 340 276 16 0 chr3 2222514 2222637 -215814521 + (TA)n Simple_repeat Simple_repeat 2 126 0 273 269 99 14 chr3 2222637 2222778 -215814380 - L1MC4 LINE L1 -1276 6766 6614 321 311 0 0 chr3 2222784 2222874 -215814284 + L1MC4 LINE L1 6614 6703 -1339 297 0 0 0 chr3 2222875 2222904 -215814254 + (CA)n Simple_repeat Simple_repeat 1 62 0 297 0 0 0 chr3 2222904 2222937 -215814221 + (CA)n Simple_repeat Simple_repeat 2 34 0 1620 117 36 0 chr3 2222952 2223174 -215813984 + MER30 DNA MER1_type 1 230 0 1651 177 0 16 chr3 2223630 2223940 -215813218 - AluJb SINE Alu -7 305 1 369 78 0 0 chr3 2224454 2224505 -215812653 + L1MA8 LINE L1 6216 6266 -25 1676 193 7 16 chr3 2224557 2224863 -215812295 - AluJo SINE Alu -9 303 1 34 24 0 0 chr3 2225165 2225206 -215811952 + AT_rich Low_complexity Low_complexity 1 41 0 302 317 49 28 chr3 2225430 2225572 -215811586 - L2 LINE L2 -196 3076 2932 637 301 59 35 chr3 2225769 2226012 -215811146 - MIR SINE MIR -4 258 3 220 156 0 22 chr3 2226014 2226059 -215811099 - L2 LINE L2 0 3313 3270 492 280 126 6 chr3 2226923 2227098 -215810060 + LTR67 LTR ERVL 353 548 -9 262 282 14 0 chr3 2227264 2227335 -215809823 + MLT1K LTR MaLR 168 239 -349 284 295 78 66 chr3 2227514 2227680 -215809478 - MIR3 SINE MIR -22 186 19 372 301 24 0 chr3 2227744 2227827 -215809331 + L2 LINE L2 3191 3275 -38 22 35 0 0 chr3 2228175 2228204 -215808954 + AT_rich Low_complexity Low_complexity 1 29 0 278 303 34 84 chr3 2229420 2229539 -215807619 - L2 LINE L2 -26 3246 3134 3369 186 13 55 chr3 2229585 2230356 -215806802 - L1M1 LINE L1 -3289 4276 3538 1131 113 38 0 chr3 2230329 2230515 -215806643 - L1 LINE L1 -4338 3227 3035 * 23349 127 21 8 chr3 2230510 2231587 -215805571 - L1M1 LINE L1 -4021 3544 2483 1935 128 0 0 chr3 2231587 2231844 -215805314 - AluSx SINE Alu -11 301 45 23349 127 21 8 chr3 2231844 2234252 -215802906 - L1M1 LINE L1 -5082 2483 13 471 155 0 0 chr3 2234684 2234768 -215802390 + GA-rich Low_complexity Low_complexity 3 86 0 2922 3 0 0 chr3 2234810 2235121 -215802037 + AluYa5 SINE Alu 1 311 0 432 303 70 7 chr3 2235262 2235404 -215801754 - MIR3 SINE MIR -54 154 4 20871 117 16 9 chr3 2235657 2238703 -215798455 - HERV9 LTR ERV1 -5277 3122 55 698 137 68 89 chr3 2238679 2238825 -215798333 - LTR12 LTR ERV1 -130 584 301 * 342 233 11 0 chr3 2238825 2238915 -215798243 - LTR30 LTR ERV1 -79 643 553 355 75 0 0 chr3 2238916 2238969 -215798189 - LTR12 LTR ERV1 -429 285 233 1073 144 43 34 chr3 2239030 2239279 -215797879 - LTR12 LTR ERV1 -456 1982 55 227 239 0 0 chr3 2239279 2239325 -215797833 - LTR30 LTR ERV1 -670 52 7 577 286 94 5 chr3 2240279 2240492 -215796666 + MIR SINE MIR 26 257 -5 1656 202 106 32 chr3 2240868 2241303 -215795855 + MLT1C LTR MaLR 1 467 0 1133 214 27 18 chr3 2241679 2241899 -215795259 + MER58A DNA MER1_type 2 223 -1 748 184 29 7 chr3 2241921 2242057 -215795101 - MER5A DNA MER1_type 0 189 51 1219 209 35 22 chr3 2242176 2242491 -215794667 + L1M4 LINE L1 4687 5005 -1141 24 0 0 0 chr3 2243158 2243182 -215793976 + AT_rich Low_complexity Low_complexity 1 24 0 293 390 45 35 chr3 2243611 2244014 -215793144 - L2 LINE L2 -585 2729 2323 734 234 6 12 chr3 2244085 2244252 -215792906 - MIR SINE MIR -23 239 74 4306 96 12 33 chr3 2244256 2244931 -215792227 - L1PA7 LINE L1 -758 5388 4728 5798 67 3 0 chr3 2244931 2245653 -215791505 + L1PA7 LINE L1 5399 6122 -32 2492 76 0 0 chr3 2245719 2246022 -215791136 + AluY SINE Alu 1 303 -8 779 153 0 58 chr3 2246059 2246196 -215790962 + AluSq/x SINE Alu 1 129 -184 38035 91 8 7 chr3 2246203 2252328 -215784830 + L1PA6 LINE L1 1 6132 -22 333 0 0 0 chr3 2252328 2252365 -215784793 + (CA)n Simple_repeat Simple_repeat 2 38 0 1072 184 0 0 chr3 2252365 2252539 -215784619 + AluJb SINE Alu 131 304 -8 675 301 30 15 chr3 2253123 2253322 -215783836 + MIR3 SINE MIR 4 205 -3 734 290 127 35 chr3 2253457 2253771 -215783387 + MER115 DNA AcHobo 350 692 -1 240 87 43 58 chr3 2254035 2254104 -215783054 + (TTATA)n Simple_repeat Simple_repeat 3 70 0 185 161 179 0 chr3 2254497 2254553 -215782605 - MIR SINE MIR -79 183 118 1527 160 4 30 chr3 2255560 2255829 -215781329 + AluSx SINE Alu 49 310 -2 2122 152 0 0 chr3 2255840 2256150 -215781008 + AluSx SINE Alu 3 312 0 671 274 13 25 chr3 2256332 2256569 -215780589 - AluSx SINE Alu -29 283 50 2160 114 7 3 chr3 2256760 2257058 -215780100 - AluSx SINE Alu -13 299 1 1755 179 3 0 chr3 2259196 2259493 -215777665 + AluJo SINE Alu 1 298 -14 382 279 131 25 chr3 2259546 2259668 -215777490 + L2 LINE L2 3137 3271 -1 1328 130 28 14 chr3 2260077 2260292 -215776866 - L1MC1 LINE L1 0 6333 6116 1060 89 0 7 chr3 2260292 2260427 -215776731 - AluSc SINE Alu -21 288 155 944 123 7 32 chr3 2260431 2260585 -215776573 - L1MC1 LINE L1 -205 6128 5979 871 266 40 4 chr3 2260716 2260942 -215776216 + MIR SINE MIR 2 235 -27 310 167 61 0 chr3 2261051 2261117 -215776041 + MER116 DNA Mariner 1 70 -10 254 178 0 0 chr3 2262754 2262799 -215774359 - MIR SINE MIR -137 125 81 293 301 150 0 chr3 2262829 2262942 -215774216 - L2 LINE L2 -6 3266 3137 673 286 161 23 chr3 2262947 2263289 -215773869 - L2 LINE L2 0 3313 2925 742 304 206 19 chr3 2263502 2263963 -215773195 - L2 LINE L2 -463 2851 2305 252 357 56 0 chr3 2264074 2264200 -215772958 - L2 LINE L2 -215 3057 2925 417 317 72 24 chr3 2264358 2264525 -215772633 + MIR3 SINE MIR 23 197 -11 200 241 17 0 chr3 2264546 2264604 -215772554 + (TA)n Simple_repeat Simple_repeat 2 60 0 780 242 111 75 chr3 2264655 2265015 -215772143 + MER21B LTR ERV1 6 378 -485 741 196 37 0 chr3 2265196 2265359 -215771799 + MER3 DNA MER1_type 1 122 -87 839 240 84 51 chr3 2265387 2265683 -215771475 + MER21B LTR ERV1 408 713 -150 22 0 0 0 chr3 2265695 2265717 -215771441 + AT_rich Low_complexity Low_complexity 1 22 0 605 322 58 37 chr3 2265821 2266062 -215771096 + MIR SINE MIR 18 262 0 858 203 57 10 chr3 2266167 2266359 -215770799 + MER3 DNA MER1_type 1 201 -8 323 289 29 0 chr3 2266722 2266826 -215770332 + MIR SINE MIR 156 262 0 1682 264 64 38 chr3 2268412 2269049 -215768109 + MER76 LTR ERV 1 654 -34 1557 142 59 4 chr3 2269272 2269511 -215767647 - AluJb SINE Alu -58 254 3 3321 214 64 36 chr3 2271105 2272315 -215764843 - L1ME1 LINE L1 -9 6437 5178 3012 166 10 53 chr3 2272315 2272894 -215764264 + MLT2B3 LTR ERVL 1 554 0 3321 214 64 36 chr3 2272894 2273100 -215764058 - L1ME1 LINE L1 -1268 5178 4979 5957 136 35 7 chr3 2273102 2274849 -215762309 - L1MA3 LINE L1 0 7724 5939 * 12479 171 27 10 chr3 2274848 2277124 -215760034 - L1MA3 LINE L1 -3160 4405 1348 1229 167 121 74 chr3 2277124 2277554 -215759604 + LTR7 LTR ERV1 1 450 0 12479 171 27 10 chr3 2277554 2278913 -215758245 - L1MA3 LINE L1 -6217 1348 13 2732 241 65 2 chr3 2278916 2279749 -215757409 - L1ME1 LINE L1 -1443 4983 4099 5047 181 48 50 chr3 2279749 2280994 -215756164 + L1MCa LINE L1 41 1283 -5143 771 224 106 8 chr3 2280993 2281239 -215755919 - L1ME1 LINE L1 -2373 4053 3784 * 297 347 56 0 chr3 2281466 2281610 -215755548 + MIR3 SINE MIR 54 205 -3 1171 237 95 43 chr3 2281815 2282014 -215755144 + L1M4 LINE L1 4333 4520 -1626 2367 97 0 0 chr3 2282014 2282304 -215754854 - AluSx SINE Alu -22 290 1 1171 237 95 43 chr3 2282304 2282724 -215754434 + L1M4 LINE L1 4520 4984 -1162 607 102 51 0 chr3 2282724 2282822 -215754336 - L1PA13 LINE L1 -2 6161 6059 2750 111 15 0 chr3 2282824 2283231 -215753927 + MLT2A2 LTR ERVL 1 413 -40 326 183 42 0 chr3 2283244 2283315 -215753843 - L1ME1 LINE L1 -4358 2068 1995 400 70 0 0 chr3 2283320 2283377 -215753781 + MLT2B1 LTR ERVL 464 520 0 1396 83 10 0 chr3 2283377 2283582 -215753576 - L1PA13 LINE L1 -102 6061 5855 428 281 17 6 chr3 2283593 2283771 -215753387 + L1ME LINE L1 5009 5188 -958 363 202 0 24 chr3 2283804 2283888 -215753270 + L1ME LINE L1 5427 5508 -656 * 29494 100 15 7 chr3 2283886 2289620 -215747538 + L1PA7 LINE L1 648 6453 -16 366 0 56 0 chr3 2289622 2289676 -215747482 + (TA)n Simple_repeat Simple_repeat 1 57 0 40 0 0 0 chr3 2289825 2289865 -215747293 + AT_rich Low_complexity Low_complexity 1 40 0 802 166 18 31 chr3 2290253 2290416 -215746742 + MLT1B LTR MaLR 185 345 -45 22 35 0 0 chr3 2290420 2290449 -215746709 + AT_rich Low_complexity Low_complexity 1 29 0 478 267 47 34 chr3 2291375 2291586 -215745572 - MIR3 SINE MIR -39 223 10 527 294 43 27 chr3 2291818 2292002 -215745156 + MER5A DNA MER1_type 1 187 -2 227 190 17 0 chr3 2292658 2292716 -215744442 + CT-rich Low_complexity Low_complexity 4 62 0 680 273 18 6 chr3 2292793 2292958 -215744200 + MIR3 SINE MIR 33 199 -9 270 0 0 0 chr3 2293550 2293580 -215743578 + (TG)n Simple_repeat Simple_repeat 2 31 0 484 259 0 36 chr3 2293741 2293853 -215743305 - L2 LINE L2 0 3272 3165 276 223 88 34 chr3 2293966 2294114 -215743044 + L1ME4a LINE L1 5965 6120 -1 241 243 121 43 chr3 2294229 2294369 -215742789 + L1ME4a LINE L1 5955 6105 -16 191 309 119 8 chr3 2294933 2295059 -215742099 - MIR SINE MIR -7 201 62 736 295 13 30 chr3 2295367 2295601 -215741557 + MIR SINE MIR 14 243 -19 410 325 7 13 chr3 2295915 2296069 -215741089 + MIR SINE MIR 1 153 -109 266 202 95 24 chr3 2297053 2297137 -215740021 + MLT1K LTR MaLR 492 581 -7 265 321 46 9 chr3 2298251 2298360 -215738798 + MIR SINE MIR 148 260 -2 2316 110 0 3 chr3 2298381 2298691 -215738467 - AluSc SINE Alu 0 309 1 330 302 86 7 chr3 2298763 2298902 -215738256 - MIR SINE MIR -111 151 2 840 217 33 5 chr3 2299019 2299203 -215737955 - MER5A DNA MER1_type 0 189 1 494 261 106 6 chr3 2299355 2299535 -215737623 - L2 LINE L2 -2 3311 3114 407 269 156 19 chr3 2300050 2300262 -215736896 - L2 LINE L2 -228 3044 2804 234 345 84 28 chr3 2301000 2301142 -215736016 - MIR SINE MIR -107 155 6 548 322 70 35 chr3 2301547 2301746 -215735412 + MIR SINE MIR 56 261 -1 1909 167 10 6 chr3 2301854 2302165 -215734993 + AluJo SINE Alu 1 312 0 2644 219 95 37 chr3 2302259 2303014 -215734144 - MER21B LTR ERV1 -52 811 13 356 362 8 8 chr3 2303361 2303488 -215733670 + MIR3 SINE MIR 76 202 -6 305 254 175 26 chr3 2306256 2306370 -215730788 + MIR3 SINE MIR 38 168 -40 26 30 0 0 chr3 2306370 2306403 -215730755 + AT_rich Low_complexity Low_complexity 1 33 0 208 383 0 54 chr3 2306806 2306973 -215730185 - L2 LINE L2 -218 3054 2897 886 316 149 25 chr3 2307090 2307613 -215729545 - L2 LINE L2 -573 2741 2154 1196 215 34 4 chr3 2308076 2308309 -215728849 - AluJb SINE Alu -23 289 50 658 182 0 0 chr3 2308595 2308705 -215728453 + FLAM_A SINE Alu 1 110 -32 195 42 0 0 chr3 2308712 2308736 -215728422 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2814 181 37 15 chr3 2308736 2309915 -215727243 - L1MC1 LINE L1 -12 6321 4992 13436 84 11 1 chr3 2309919 2312527 -215724631 - L1PA7 LINE L1 -16 6138 3509 269 317 99 5 chr3 2312656 2312858 -215724300 + L1ME LINE L1 5612 5832 -289 31 82 0 0 chr3 2312919 2312992 -215724166 + AT_rich Low_complexity Low_complexity 1 73 0 338 357 61 5 chr3 2313511 2313713 -215723445 + MIR SINE MIR 20 232 -30 1469 213 68 24 chr3 2313776 2314157 -215723001 - LTR9 LTR ERV1 0 612 215 24856 111 20 18 chr3 2314187 2318514 -215718644 - L1P LINE L1 -1784 4362 11 2282 112 7 0 chr3 2318516 2318821 -215718337 - AluSg SINE Alu -3 307 1 264 368 18 18 chr3 2319962 2320076 -215717082 + MIR SINE MIR 34 147 -115 10438 139 46 38 chr3 2321393 2322022 -215715136 + Tigger1 DNA MER2_type 10 632 -1786 1638 149 30 11 chr3 2322022 2322291 -215714867 + AluSx SINE Alu 1 274 -38 10438 139 46 38 chr3 2322291 2323756 -215713402 + Tigger1 DNA MER2_type 632 2122 -296 772 133 67 0 chr3 2323766 2323901 -215713257 - Tigger1 DNA MER2_type -1334 1084 941 * 1459 156 44 10 chr3 2323886 2324181 -215712977 + Tigger1 DNA MER2_type 2114 2418 0 279 79 0 0 chr3 2324463 2324501 -215712657 + (CA)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr3 2324554 2324575 -215712583 + AT_rich Low_complexity Low_complexity 1 21 0 40643 35 22 1 chr3 2325370 2331410 -215705748 + L1PA2 LINE L1 1 6167 0 23 33 0 0 chr3 2331863 2331893 -215705265 + AT_rich Low_complexity Low_complexity 1 30 0 343 284 74 14 chr3 2332490 2332638 -215704520 - Charlie8 DNA MER1_type -2256 161 5 1001 156 25 0 chr3 2332714 2332874 -215704284 + AluSg/x SINE Alu 135 298 -12 957 195 91 0 chr3 2332963 2333184 -215703974 + MLT1D LTR MaLR 264 504 -1 1144 242 104 41 chr3 2334559 2335047 -215702111 - MLT1K LTR MaLR -58 530 12 237 366 60 25 chr3 2335603 2335838 -215701320 + L2 LINE L2 2809 3051 -221 2237 106 3 13 chr3 2336973 2337284 -215699874 + AluSx SINE Alu 1 308 -4 15777 32 3 0 chr3 2337706 2339690 -215697468 - L1PA8 LINE L1 -848 5298 3309 5739 97 0 34 chr3 2339690 2340568 -215696590 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 2340615 2340639 -215696519 + (T)n Simple_repeat Simple_repeat 1 24 0 253 376 86 4 chr3 2340722 2340913 -215696245 - MIR3 SINE MIR -58 150 2 186 43 0 0 chr3 2340998 2341021 -215696137 + (TG)n Simple_repeat Simple_repeat 2 24 0 1089 41 75 0 chr3 2341299 2341446 -215695712 - L1PA4 LINE L1 -6 6149 5992 407 325 20 24 chr3 2342082 2342267 -215694891 - MIR SINE MIR -27 235 52 205 204 23 0 chr3 2342459 2342503 -215694655 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 2342503 2342548 -215694610 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 2342548 2342573 -215694585 + (CA)n Simple_repeat Simple_repeat 1 25 0 269 339 110 9 chr3 2343423 2343532 -215693626 + MIR3 SINE MIR 86 205 -3 495 0 0 0 chr3 2343588 2343643 -215693515 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1512 159 12 12 chr3 2343660 2343911 -215693247 - AluJo SINE Alu -49 263 13 806 313 57 32 chr3 2344339 2344745 -215692413 - LTR16A LTR ERVL -34 416 1 333 159 95 0 chr3 2344850 2344913 -215692245 + L1MB7 LINE L1 5552 5620 -554 1497 183 59 7 chr3 2344913 2345186 -215691972 + AluJo SINE Alu 1 287 -25 306 206 0 16 chr3 2345191 2345254 -215691904 - L1MCa LINE L1 -4359 2067 2006 2020 213 59 6 chr3 2345257 2345796 -215691362 + L1MB7 LINE L1 5603 6170 -14 232 206 38 0 chr3 2345804 2345935 -215691223 + G-rich Low_complexity Low_complexity 3 138 0 15777 32 3 0 chr3 2346101 2348085 -215689073 - L1PA2 LINE L1 -848 5298 3309 6986 30 0 0 chr3 2348085 2348928 -215688230 + L1PA2 LINE L1 5322 6167 0 23 33 0 0 chr3 2349381 2349411 -215687747 + AT_rich Low_complexity Low_complexity 1 30 0 343 284 74 14 chr3 2350008 2350156 -215687002 - Charlie8 DNA MER1_type -2256 161 5 1001 156 25 0 chr3 2350232 2350392 -215686766 + AluSg/x SINE Alu 137 300 -12 957 195 91 0 chr3 2350481 2350702 -215686456 + MLT1D LTR MaLR 264 504 -1 1144 242 104 41 chr3 2352077 2352565 -215684593 - MLT1K LTR MaLR -58 530 12 237 366 60 25 chr3 2353121 2353356 -215683802 + L2 LINE L2 2809 3051 -221 2229 107 3 13 chr3 2354491 2354801 -215682357 + AluSx SINE Alu 1 307 -5 15777 32 3 0 chr3 2355223 2357207 -215679951 - L1PA8 LINE L1 -848 5298 3309 5758 95 0 34 chr3 2357207 2358085 -215679073 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 2358132 2358156 -215679002 + (T)n Simple_repeat Simple_repeat 1 24 0 253 376 86 4 chr3 2358239 2358430 -215678728 - MIR3 SINE MIR -58 150 2 186 43 0 0 chr3 2358515 2358538 -215678620 + (TG)n Simple_repeat Simple_repeat 2 24 0 1089 41 75 0 chr3 2358816 2358963 -215678195 - L1PA4 LINE L1 -6 6149 5992 407 325 20 24 chr3 2359599 2359784 -215677374 - MIR SINE MIR -27 235 52 205 204 23 0 chr3 2359976 2360020 -215677138 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 2360020 2360065 -215677093 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 2360065 2360090 -215677068 + (CA)n Simple_repeat Simple_repeat 1 25 0 269 339 110 9 chr3 2360940 2361049 -215676109 + MIR3 SINE MIR 86 205 -3 423 0 0 0 chr3 2361105 2361152 -215676006 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1512 159 12 12 chr3 2361169 2361420 -215675738 - AluJo SINE Alu -49 263 13 806 313 57 32 chr3 2361848 2362254 -215674904 - LTR16A LTR ERVL -34 416 1 333 159 95 0 chr3 2362359 2362422 -215674736 + L1MB7 LINE L1 5552 5620 -554 1497 183 59 7 chr3 2362422 2362695 -215674463 + AluJo SINE Alu 1 287 -25 396 155 0 0 chr3 2362695 2362766 -215674392 + (TA)n Simple_repeat Simple_repeat 1 71 0 2017 213 59 6 chr3 2362766 2363305 -215673853 + L1MB7 LINE L1 5603 6170 -14 622 176 16 0 chr3 2363313 2363624 -215673534 + G-rich Low_complexity Low_complexity 1 316 0 180 0 0 0 chr3 2363889 2363909 -215673249 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 315 320 120 0 chr3 2364150 2364300 -215672858 - MIR SINE MIR -14 248 81 277 332 91 15 chr3 2364611 2364810 -215672348 - LTR16A LTR ERVL -5 445 232 643 291 76 64 chr3 2365137 2365559 -215671599 - MLT1L LTR MaLR -188 427 1 188 263 35 35 chr3 2366789 2366846 -215670312 - L3 LINE CR1 -5 1572 1516 214 299 15 15 chr3 2366929 2366996 -215670162 - MER5B DNA MER1_type -111 67 1 21 36 0 0 chr3 2367121 2367149 -215670009 + AT_rich Low_complexity Low_complexity 1 28 0 206 139 28 0 chr3 2367680 2367716 -215669442 + (CAT)n Simple_repeat Simple_repeat 2 38 0 527 215 38 51 chr3 2368743 2368901 -215668257 + MER5C DNA MER1_type 169 324 0 359 283 72 17 chr3 2369141 2369321 -215667837 + L1MC4a LINE L1 5710 5899 -1909 781 120 66 24 chr3 2369835 2370002 -215667156 + L1MA8 LINE L1 6113 6286 -5 192 366 98 60 chr3 2370107 2370364 -215666794 - L2 LINE L2 -5 3267 2992 1624 173 125 48 chr3 2370364 2370595 -215666563 - MLT1C LTR MaLR -1 466 254 360 0 0 0 chr3 2370595 2370635 -215666523 + (TG)n Simple_repeat Simple_repeat 2 41 0 1624 173 125 48 chr3 2370635 2370836 -215666322 - MLT1C LTR MaLR -213 254 1 192 366 98 60 chr3 2370836 2370925 -215666233 - L2 LINE L2 -280 2992 2908 251 351 9 27 chr3 2370979 2371090 -215666068 - L2 LINE L2 -613 2701 2593 465 252 84 15 chr3 2371182 2371313 -215665845 - MIR SINE MIR -62 200 61 2001 186 14 3 chr3 2373471 2373832 -215663326 - MLT1A1 LTR MaLR 0 365 1 1662 191 13 3 chr3 2373895 2374199 -215662959 + AluJb SINE Alu 1 307 -5 327 49 0 0 chr3 2374203 2374244 -215662914 + (GGA)n Simple_repeat Simple_repeat 3 43 0 336 259 126 21 chr3 2375098 2375241 -215661917 + L1ME4a LINE L1 5962 6119 -2 21 36 0 0 chr3 2375642 2375670 -215661488 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 2375967 2376001 -215661157 + AT_rich Low_complexity Low_complexity 1 34 0 929 172 84 0 chr3 2376685 2376888 -215660270 + Charlie1 DNA MER1_type 6 225 -2536 510 200 16 8 chr3 2376896 2377021 -215660137 + Charlie1 DNA MER1_type 2632 2757 -4 1795 203 120 0 chr3 2377091 2377509 -215659649 - MER119 DNA MER1_type -110 473 6 1802 111 0 24 chr3 2378317 2378570 -215658588 + AluSg SINE Alu 48 294 -16 297 262 171 37 chr3 2379075 2379239 -215657919 - MIR SINE MIR -70 192 7 190 253 191 43 chr3 2379324 2379486 -215657672 - L3b LINE CR1 -110 1473 1288 214 291 36 0 chr3 2379536 2379591 -215657567 + L2 LINE L2 3251 3307 -6 274 270 54 0 chr3 2380545 2380619 -215656539 - MER63 DNA MER1_type -5 1056 979 266 214 0 0 chr3 2380621 2380677 -215656481 - MER63 DNA MER1_type -311 750 695 334 303 40 59 chr3 2380724 2380876 -215656282 + MIR SINE MIR 104 252 -10 202 268 0 62 chr3 2381115 2381212 -215655946 + CT-rich Low_complexity Low_complexity 2 92 0 389 341 28 22 chr3 2383748 2383927 -215653231 + MIR SINE MIR 47 226 -36 453 216 20 0 chr3 2383941 2384043 -215653115 - MER3 DNA MER1_type -25 184 81 1273 181 3 100 chr3 2384044 2384364 -215652794 + AluJb SINE Alu 12 300 -12 2573 79 31 8 chr3 2386135 2386491 -215650667 - THE1B LTR MaLR 0 364 1 1250 212 24 44 chr3 2387165 2387462 -215649696 - AluJo SINE Alu -21 291 1 280 189 42 95 chr3 2389229 2389280 -215647878 + MIR SINE MIR 173 218 -44 1985 161 0 3 chr3 2389280 2389584 -215647574 + AluSx SINE Alu 1 303 -9 280 189 42 95 chr3 2389584 2389627 -215647531 + MIR SINE MIR 218 262 0 198 370 0 14 chr3 2389627 2389700 -215647458 - MIR SINE MIR -174 88 17 2304 157 0 42 chr3 2389742 2390176 -215646982 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr3 2390764 2390788 -215646370 + AT_rich Low_complexity Low_complexity 1 24 0 332 357 134 34 chr3 2390959 2391853 -215645305 - L2 LINE L2 -338 2976 1958 3598 117 43 23 chr3 2391853 2392451 -215644707 - MER4B LTR ERV1 0 610 1 332 357 134 34 chr3 2392451 2392613 -215644545 - L2 LINE L2 -1356 1958 1814 27 29 0 0 chr3 2393240 2393274 -215643884 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr3 2393283 2393321 -215643837 + GC_rich Low_complexity Low_complexity 1 38 0 2377 55 7 0 chr3 2393902 2394194 -215642964 - AluSp SINE Alu -19 294 1 271 258 15 0 chr3 2394311 2394377 -215642781 + MIR SINE MIR 87 153 -109 4412 109 24 46 chr3 2394499 2394850 -215642308 - MER4E LTR ERV1 0 766 409 2142 118 7 0 chr3 2394850 2395139 -215642019 - AluSx SINE Alu -21 291 1 4412 109 24 46 chr3 2395139 2395570 -215641588 - MER4E LTR ERV1 -357 409 1 362 252 63 9 chr3 2395752 2395863 -215641295 - L2 LINE L2 0 3313 3197 28 0 0 0 chr3 2396029 2396057 -215641101 + AT_rich Low_complexity Low_complexity 1 28 0 1428 155 78 42 chr3 2397509 2397793 -215639365 + AluJo SINE Alu 1 294 -18 183 382 0 0 chr3 2397995 2398050 -215639108 - MIR SINE MIR -204 58 4 229 314 117 22 chr3 2398276 2398413 -215638745 - MIR SINE MIR -58 204 55 2704 125 82 31 chr3 2398579 2399164 -215637994 - MER4B LTR ERV1 0 779 1 654 254 82 44 chr3 2399215 2399534 -215637624 - MLT1K LTR MaLR 0 588 258 1617 165 43 25 chr3 2399622 2399949 -215637209 - MER7A DNA MER2_type -14 332 2 892 175 56 12 chr3 2402317 2402477 -215634681 + AluJb SINE Alu 134 300 -12 1136 230 143 31 chr3 2403617 2404065 -215633093 + MLT1J LTR MaLR 1 498 -13 372 121 0 0 chr3 2404717 2404775 -215632383 + L1MB8 LINE L1 6113 6170 -8 22 70 0 0 chr3 2405473 2405516 -215631642 + AT_rich Low_complexity Low_complexity 1 43 0 2266 132 0 0 chr3 2405521 2405825 -215631333 + AluSx SINE Alu 1 304 -8 9834 53 11 0 chr3 2405829 2407079 -215630079 + HSMAR1 DNA Mariner 24 1287 0 785 161 0 0 chr3 2407157 2407281 -215629877 + FLAM_C SINE Alu 1 124 -9 361 252 33 16 chr3 2407477 2407624 -215629534 + MIR SINE MIR 70 260 -2 372 284 20 0 chr3 2407750 2407852 -215629306 + Zaphod DNA AcHobo 12 115 -3916 1879 198 46 12 chr3 2407883 2408364 -215628794 + L1MC3 LINE L1 3657 4153 -1993 4414 168 66 16 chr3 2408365 2408382 -215628776 + L1MC3 LINE L1 5273 5288 -2497 1997 152 7 0 chr3 2408382 2408679 -215628479 + AluSx SINE Alu 1 299 -13 4414 168 66 16 chr3 2408679 2409008 -215628150 + L1MC3 LINE L1 5288 5599 -2186 1695 174 142 12 chr3 2409008 2409416 -215627742 - LOR1b LTR ERV1 0 461 1 4414 168 66 16 chr3 2409416 2410113 -215627045 + L1MC3 LINE L1 5599 6369 -1416 480 170 76 82 chr3 2410113 2410284 -215626874 - LTR48 LTR ERV1 -4 783 614 1479 187 132 46 chr3 2410313 2410752 -215626406 - LTR48 LTR ERV1 -310 477 1 5899 140 39 94 chr3 2410768 2412228 -215624930 + L1MC3 LINE L1 6380 7759 -26 896 174 6 45 chr3 2412262 2412440 -215624718 + FRAM SINE Alu 1 171 -5 782 192 53 70 chr3 2412440 2412635 -215624523 + L1M3 LINE L1 5481 5686 -485 259 149 0 21 chr3 2412635 2412682 -215624476 + Alu SINE Alu 245 290 -12 782 192 53 70 chr3 2412682 2412812 -215624346 + L1M3 LINE L1 5686 5817 -354 * 1932 171 49 63 chr3 2412805 2413313 -215623845 + L1MB7 LINE L1 5676 6176 -8 243 227 0 0 chr3 2413313 2413379 -215623779 + GA-rich Low_complexity Low_complexity 5 70 0 842 256 96 14 chr3 2413415 2413696 -215623462 + Zaphod DNA AcHobo 154 457 -3574 234 197 212 0 chr3 2413714 2413780 -215623378 + Zaphod DNA AcHobo 584 663 -3368 * 971 191 221 13 chr3 2413779 2414076 -215623082 + Zaphod DNA AcHobo 3282 3640 -391 927 197 25 142 chr3 2414076 2414603 -215622555 - MER4C LTR ERV1 0 465 1 2257 146 28 8 chr3 2414612 2414969 -215622189 - THE1B LTR MaLR 0 364 1 386 301 7 0 chr3 2415018 2415154 -215622004 - MER4C-int LTR ERV1 -79 6519 6383 262 237 30 69 chr3 2415151 2415282 -215621876 - MER4C-int LTR ERV1 -175 6423 6298 * 329 185 0 25 chr3 2415282 2415363 -215621795 + (TATG)n Simple_repeat Simple_repeat 4 82 0 207 0 0 0 chr3 2415365 2415388 -215621770 + (CA)n Simple_repeat Simple_repeat 2 24 0 8705 136 52 22 chr3 2415390 2415639 -215621519 - MER4C-int LTR ERV1 -491 5840 5600 1720 134 0 0 chr3 2415639 2415878 -215621280 - AluSx SINE Alu -73 239 1 8705 136 52 22 chr3 2415878 2416279 -215620879 - MER4C-int LTR ERV1 -731 5600 5212 1875 174 0 10 chr3 2416279 2416577 -215620581 - AluSx SINE Alu -17 295 1 8705 136 52 22 chr3 2416577 2417691 -215619467 - MER4C-int LTR ERV1 -1118 5213 4022 1420 214 3 26 chr3 2417704 2418007 -215619151 + AluJb SINE Alu 15 310 -2 25 0 0 0 chr3 2418009 2418034 -215619124 + AT_rich Low_complexity Low_complexity 1 25 0 358 169 0 0 chr3 2418034 2418105 -215619053 - MER4C-int LTR ERV1 -3623 4497 4427 2114 127 74 3 chr3 2418105 2418444 -215618714 - THE1B LTR MaLR -1 363 1 11391 91 7 29 chr3 2418444 2420059 -215617099 - THE1B-int LTR MaLR 0 1580 1 2401 127 31 6 chr3 2420059 2420414 -215616744 - THE1B LTR MaLR 0 364 1 3491 181 72 97 chr3 2420414 2421302 -215615856 - MER4C-int LTR ERV1 -1444 3437 2402 2115 123 0 13 chr3 2421302 2421610 -215615548 + AluSx SINE Alu 1 304 -8 3491 181 72 97 chr3 2421610 2422148 -215615010 - MER4C-int LTR ERV1 -2479 2402 1852 266 232 245 60 chr3 2422148 2422381 -215614777 - MER34C LTR ERV1 -155 430 155 251 205 301 12 chr3 2422381 2422464 -215614694 - MER4C-int LTR ERV1 -4135 988 882 2406 164 55 17 chr3 2422467 2423173 -215613985 + LTR1B LTR ERV1 1 785 0 943 184 0 153 chr3 2423175 2423463 -215613695 - MER4C-int LTR ERV1 -4149 3388 3145 1384 189 97 70 chr3 2423545 2423603 -215613555 - MER4C-int LTR ERV1 -4568 1763 1708 1496 223 7 3 chr3 2423603 2423895 -215613263 + AluJo SINE Alu 1 293 -19 1384 189 97 70 chr3 2423895 2424239 -215612919 - MER4C-int LTR ERV1 -4623 1708 1350 589 146 131 106 chr3 2424329 2424444 -215612714 - MER4C-int LTR ERV1 -4933 1398 1287 383 250 0 0 chr3 2424444 2424516 -215612642 - tRNA-Glu-GAG tRNA tRNA -1 74 3 589 146 131 106 chr3 2424516 2424711 -215612447 - MER4C-int LTR ERV1 -5044 1287 994 817 239 73 19 chr3 2425168 2425420 -215611738 - MER4C-int LTR ERV1 -6162 436 81 2095 116 0 55 chr3 2425420 2425748 -215611410 + AluSg SINE Alu 1 310 0 817 239 73 19 chr3 2425748 2425834 -215611324 - MER4C-int LTR ERV1 -6517 81 1 1216 200 37 134 chr3 2425837 2426352 -215610806 - MER4C LTR ERV1 0 465 1 1140 231 28 3 chr3 2426352 2426634 -215610524 + Zaphod DNA AcHobo 3637 3925 -106 375 141 0 0 chr3 2426944 2427008 -215610150 + (TCCC)n Simple_repeat Simple_repeat 1 64 0 749 189 6 89 chr3 2427859 2428039 -215609119 + FRAM SINE Alu 1 164 -12 262 305 0 12 chr3 2428622 2428704 -215608454 + L2 LINE L2 3134 3214 -58 849 278 85 39 chr3 2429049 2429459 -215607699 - LTR16A LTR ERVL -5 445 17 195 268 18 0 chr3 2429480 2429536 -215607622 - MER5A DNA MER1_type -6 183 127 1992 143 0 3 chr3 2429536 2429823 -215607335 + AluJb SINE Alu 1 286 -26 276 158 0 0 chr3 2429823 2429880 -215607278 + (CA)n Simple_repeat Simple_repeat 1 57 0 795 193 0 0 chr3 2429880 2430015 -215607143 - MER5A DNA MER1_type -53 136 2 576 331 48 51 chr3 2430142 2430577 -215606581 - L2 LINE L2 -504 2810 2377 242 208 57 19 chr3 2431897 2431950 -215605208 - MIR SINE MIR -5 257 203 2098 135 0 0 chr3 2431998 2432286 -215604872 + AluSx SINE Alu 1 288 -24 185 233 0 23 chr3 2432672 2432715 -215604443 - MIR SINE MIR -62 146 105 180 402 51 8 chr3 2432742 2432859 -215604299 + MER5A DNA MER1_type 49 170 -19 515 266 62 35 chr3 2433461 2433687 -215603471 + L1ME LINE L1 5547 5778 -343 1539 92 0 0 chr3 2433818 2434024 -215603134 + L1PA8A LINE L1 10 215 -5660 * 27904 129 12 13 chr3 2434021 2438330 -215598828 + L1PA8A LINE L1 1022 5362 -1084 2021 113 0 34 chr3 2438330 2438642 -215598516 + AluSp SINE Alu 1 302 0 27904 129 12 13 chr3 2438642 2439725 -215597433 + L1PA8A LINE L1 5362 6445 -1 1919 108 0 73 chr3 2439745 2440061 -215597097 - AluSg SINE Alu -9 301 9 288 137 0 0 chr3 2440065 2440116 -215597042 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 0 0 0 chr3 2440898 2440921 -215596237 + AT_rich Low_complexity Low_complexity 1 23 0 625 217 0 0 chr3 2441662 2441777 -215595381 - MIR SINE MIR -136 126 12 249 284 108 68 chr3 2441936 2442112 -215595046 + MIR SINE MIR 56 238 -24 180 0 0 0 chr3 2442467 2442487 -215594671 + (A)n Simple_repeat Simple_repeat 1 20 0 305 311 48 0 chr3 2442581 2442684 -215594474 - L3b LINE CR1 -199 1384 1277 588 219 9 0 chr3 2442731 2442845 -215594313 - Charlie1 DNA MER1_type -1 2760 2646 657 212 8 8 chr3 2442852 2442970 -215594188 + FLAM_C SINE Alu 3 120 -23 2486 48 0 3 chr3 2442996 2443285 -215593873 - AluY SINE Alu -23 288 1 880 221 103 0 chr3 2443294 2443498 -215593660 - Charlie1 DNA MER1_type -2536 225 1 1641 179 43 13 chr3 2443586 2443888 -215593270 - AluJo SINE Alu -1 311 1 507 236 182 32 chr3 2444564 2444784 -215592374 - MIR SINE MIR -8 254 2 1732 173 0 23 chr3 2444802 2445108 -215592050 + AluJb SINE Alu 2 300 -12 537 273 23 102 chr3 2446357 2446661 -215590497 + Charlie8 DNA MER1_type 9 288 -2129 2188 95 3 0 chr3 2447307 2447641 -215589517 - AluSq SINE Alu 0 335 1 230 143 71 0 chr3 2448438 2448480 -215588678 + Tigger6b DNA MER2_type 818 862 -735 1836 144 0 47 chr3 2449029 2449232 -215587926 - AluJo SINE Alu -24 288 102 2372 103 71 8 chr3 2449232 2449583 -215587575 - THE1C LTR MaLR -2 373 1 1836 144 0 47 chr3 2449583 2449677 -215587481 - AluJo SINE Alu -210 102 5 2009 147 6 22 chr3 2450060 2450372 -215586786 - AluSx SINE Alu -5 307 1 342 279 55 24 chr3 2451463 2451628 -215585530 - MIR3 SINE MIR -24 184 15 720 209 144 56 chr3 2452186 2452375 -215584783 + L1ME4a LINE L1 5667 5838 -283 1617 198 27 3 chr3 2452375 2452668 -215584490 + AluJo SINE Alu 1 300 -12 720 209 144 56 chr3 2452668 2452798 -215584360 + L1ME4a LINE L1 5838 6014 -107 33862 35 2 2 chr3 2453099 2457139 -215580019 - L1P LINE L1 -1633 4513 472 7124 36 0 0 chr3 2457134 2458386 -215578772 + L1P1 LINE L1 4554 5805 -350 * 23 0 0 0 chr3 2458783 2458806 -215578352 + AT_rich Low_complexity Low_complexity 1 23 0 781 253 21 11 chr3 2459383 2459569 -215577589 - MER5A DNA MER1_type 0 189 2 609 276 134 32 chr3 2459637 2459981 -215577177 - L2 LINE L2 -1 3312 2934 934 259 59 8 chr3 2461409 2461645 -215575513 - MIR SINE MIR 0 262 15 2070 122 25 0 chr3 2461762 2462048 -215575110 + AluSx SINE Alu 1 293 -19 21 95 0 0 chr3 2462103 2462166 -215574992 + AT_rich Low_complexity Low_complexity 1 63 0 786 274 34 1 chr3 2462299 2462518 -215574640 - MIR SINE MIR -6 256 30 859 219 72 0 chr3 2462806 2463085 -215574073 + L1MEc LINE L1 2020 2318 -4078 479 256 0 0 chr3 2463064 2463185 -215573973 + L1MEc LINE L1 3433 3553 -2662 * 525 217 19 9 chr3 2463188 2463294 -215573864 + AluJo SINE Alu 116 222 -90 2806 224 54 15 chr3 2463320 2464101 -215573057 + L1MEc LINE L1 3584 4394 -1821 1611 157 102 4 chr3 2464616 2464890 -215572268 + AluJo SINE Alu 1 301 -11 782 199 34 28 chr3 2465071 2465247 -215571911 + MER5B DNA MER1_type 2 178 0 211 333 121 0 chr3 2466190 2466355 -215570803 + L2 LINE L2 2864 3048 -224 1912 149 0 17 chr3 2466536 2466831 -215570327 - AluJo SINE Alu -22 290 1 711 153 0 8 chr3 2466933 2467051 -215570107 - L1ME1 LINE L1 -5 6161 6045 319 194 124 5 chr3 2467088 2467231 -215569927 - MIR SINE MIR -27 235 13 2298 154 3 16 chr3 2467783 2468154 -215569004 - MER47A DNA MER2_type 0 366 1 1317 219 108 23 chr3 2468913 2469302 -215567856 + MLT1C LTR MaLR 1 422 -45 1826 102 31 0 chr3 2469341 2469596 -215567562 + AluSc SINE Alu 42 304 -5 230 132 26 0 chr3 2469605 2469643 -215567515 + MLT1B LTR MaLR 352 390 0 2871 139 7 16 chr3 2469885 2470325 -215566833 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 2470916 2471225 -215565933 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 2471341 2471493 -215565665 + L1MC5 LINE L1 7027 7178 -801 1826 153 0 14 chr3 2471493 2471780 -215565378 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 2471783 2471807 -215565351 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 2471807 2471877 -215565281 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 2472046 2472087 -215565071 + (CA)n Simple_repeat Simple_repeat 2 42 0 425 217 43 122 chr3 2472096 2472237 -215564921 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 2472237 2472815 -215564343 + L1PA7 LINE L1 5579 6154 0 425 217 43 122 chr3 2472815 2472827 -215564331 + L1MC5 LINE L1 7460 7471 -490 2212 129 0 0 chr3 2472827 2473138 -215564020 + AluSx SINE Alu 1 311 -1 425 217 43 122 chr3 2473138 2473213 -215563945 + L1MC5 LINE L1 7471 7521 -440 1520 213 216 17 chr3 2473241 2473649 -215563509 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 2473687 2473982 -215563176 - L1MCa LINE L1 -4387 1995 1698 * 11622 209 48 23 chr3 2473978 2474604 -215562554 - L1MD1 LINE L1 -1 6635 6027 2175 125 0 0 chr3 2474604 2474916 -215562242 - AluSx SINE Alu 0 312 1 11622 209 48 23 chr3 2474916 2480327 -215556831 - L1MD1 LINE L1 -609 6027 202 1440 171 0 0 chr3 2480332 2480549 -215556609 - AluJb SINE Alu -30 282 66 603 259 63 0 chr3 2480555 2480698 -215556460 - L1MD1 LINE L1 -6358 182 31 1680 235 66 84 chr3 2480727 2481197 -215555961 - L1MCa LINE L1 -4727 1657 1180 1718 183 3 25 chr3 2481197 2481514 -215555644 - AluJb SINE Alu -2 310 1 1680 235 66 84 chr3 2481514 2481548 -215555610 - L1MCa LINE L1 -5204 1180 1147 1851 183 3 3 chr3 2481548 2481859 -215555299 - AluJb SINE Alu -1 311 1 1680 235 66 84 chr3 2481859 2482262 -215554896 - L1MCa LINE L1 -5237 1147 765 227 64 0 43 chr3 2482340 2482387 -215554771 + LTR66 LTR ERVL 394 438 -172 180 77 0 0 chr3 2482388 2482414 -215554744 + (GA)n Simple_repeat Simple_repeat 2 27 0 249 33 0 0 chr3 2482463 2482493 -215554665 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1685 191 3 3 chr3 2483065 2483364 -215553794 - AluJo SINE Alu -13 299 1 198 0 0 0 chr3 2483365 2483387 -215553771 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 2483387 2483409 -215553749 + AT_rich Low_complexity Low_complexity 1 22 0 475 188 11 152 chr3 2483690 2483903 -215553255 + L1MC5 LINE L1 7545 7712 -249 1715 168 45 3 chr3 2483903 2484189 -215552969 - AluJb SINE Alu -14 298 1 475 188 11 152 chr3 2484189 2484252 -215552906 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 2484295 2484597 -215552561 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 2484774 2484924 -215552234 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 2485726 2485818 -215551340 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 2485830 2485971 -215551187 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 2487622 2487867 -215549291 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 2487950 2488052 -215549106 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 2488360 2488384 -215548774 + AT_rich Low_complexity Low_complexity 1 24 0 1895 143 61 3 chr3 2489477 2489770 -215547388 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 2490360 2490534 -215546624 - MIR SINE MIR -12 250 48 5246 56 0 0 chr3 2490549 2491156 -215546002 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 2491308 2491438 -215545720 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 2492017 2492288 -215544870 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 2492292 2492540 -215544618 + L3 LINE CR1 605 877 -700 236 315 65 0 chr3 2492598 2492706 -215544452 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 2492816 2493035 -215544123 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 2493071 2493573 -215543585 + L3 LINE CR1 1019 1527 -50 2124 105 3 24 chr3 2494207 2494523 -215542635 + AluSp SINE Alu 1 310 0 194 227 0 23 chr3 2494578 2494622 -215542536 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 2495116 2495418 -215541740 - AluJb SINE Alu -10 302 2 2109 130 0 13 chr3 2496105 2496420 -215540738 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr3 2496817 2496845 -215540313 + (CA)n Simple_repeat Simple_repeat 2 29 0 393 282 87 28 chr3 2497700 2497952 -215539206 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 2497962 2498043 -215539115 + L1MC/D LINE L1 5428 5508 -734 832 176 0 0 chr3 2498277 2498408 -215538750 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 2498420 2498721 -215538437 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 2498751 2498938 -215538220 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 2501551 2501586 -215535572 + AT_rich Low_complexity Low_complexity 1 35 0 1909 150 0 20 chr3 2502333 2502633 -215534525 + AluSx SINE Alu 1 294 -18 1980 125 59 0 chr3 2503252 2503539 -215533619 + AluSx SINE Alu 1 304 -8 230 132 26 0 chr3 2503548 2503586 -215533572 + MLT1B LTR MaLR 352 390 0 2855 141 7 16 chr3 2503828 2504268 -215532890 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 2504859 2505168 -215531990 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 2505284 2505436 -215531722 + L1MC5 LINE L1 7027 7178 -801 1839 150 0 14 chr3 2505436 2505723 -215531435 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 2505726 2505750 -215531408 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 2505750 2505820 -215531338 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 2505989 2506030 -215531128 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 218 44 118 chr3 2506039 2506180 -215530978 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 2506180 2506758 -215530400 + L1PA7 LINE L1 5579 6154 0 431 218 44 118 chr3 2506758 2506769 -215530389 + L1MC5 LINE L1 7460 7470 -491 2227 129 0 0 chr3 2506769 2507080 -215530078 + AluSx SINE Alu 1 311 -1 431 218 44 118 chr3 2507080 2507155 -215530003 + L1MC5 LINE L1 7470 7521 -440 1520 213 216 17 chr3 2507183 2507591 -215529567 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 2507629 2507924 -215529234 - L1MCa LINE L1 -4387 2039 1742 * 5045 189 45 19 chr3 2507920 2508547 -215528611 - L1MD1 LINE L1 -1 6241 5632 2122 125 0 3 chr3 2508547 2508858 -215528300 - AluSx SINE Alu -2 310 1 5045 189 45 19 chr3 2508858 2510135 -215527023 - L1MD1 LINE L1 -610 5632 4288 11309 44 3 0 chr3 2510301 2512379 -215524779 + L1PA6 LINE L1 4066 6150 -4 1402 143 33 8 chr3 2512379 2512624 -215524534 + MER45B DNA AcHobo 790 1040 0 383 289 0 10 chr3 2512639 2512736 -215524422 - MER117 DNA MER1_type -34 163 68 300 352 80 12 chr3 2513191 2513353 -215523805 - MIR SINE MIR -56 206 34 781 165 0 24 chr3 2513511 2513629 -215523529 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 2513629 2513670 -215523488 + (CA)n Simple_repeat Simple_repeat 2 42 0 630 246 89 25 chr3 2514530 2514611 -215522547 + MER33 DNA MER1_type 1 75 -2510 2061 173 42 58 chr3 2514611 2515061 -215522097 + LTR47B LTR ERVL 1 443 0 630 246 89 25 chr3 2515061 2515194 -215521964 + MER33 DNA MER1_type 75 234 -2351 432 0 0 0 chr3 2515194 2515242 -215521916 + (TA)n Simple_repeat Simple_repeat 2 49 0 630 246 89 25 chr3 2515242 2515262 -215521896 + MER33 DNA MER1_type 234 251 -73 8153 6 0 0 chr3 2515262 2516336 -215520822 - L1HS LINE L1 -16 6139 5066 2231 26 0 8 chr3 2516332 2516596 -215520562 + L1P LINE L1 3581 3842 -2304 * 1344 221 3 3 chr3 2516738 2517023 -215520135 - AluSp SINE Alu -28 285 1 396 185 0 0 chr3 2518507 2518599 -215518559 - Charlie5 DNA MER1_type -11 2601 2510 14380 45 1 3 chr3 2518600 2520361 -215516797 - L1P LINE L1 -1075 5071 3316 2604 165 34 25 chr3 2520505 2521118 -215516040 - pTR5 LTR ERV1 -1075 1363 745 230 152 0 0 chr3 2521121 2521154 -215516004 - Alu SINE Alu -266 34 2 635 261 159 8 chr3 2521188 2521445 -215515713 - L1ME3A LINE L1 -191 5979 5684 1242 124 10 38 chr3 2521708 2521917 -215515241 + AluSg/x SINE Alu 105 307 -5 1883 128 25 4 chr3 2523197 2523471 -215513687 - AluSc SINE Alu -29 280 1 6868 201 60 9 chr3 2524076 2526093 -215511065 + L1MB2 LINE L1 3678 5785 -386 2003 127 43 0 chr3 2526086 2526409 -215510749 - L1P LINE L1 -989 5157 4821 * 2844 67 6 11 chr3 2526409 2526766 -215510392 + L1PA10 LINE L1 5808 6164 -4 198 71 0 0 chr3 2527903 2527931 -215509227 + (CA)n Simple_repeat Simple_repeat 2 29 0 2122 132 90 3 chr3 2527932 2528297 -215508861 + L1MB2 LINE L1 5773 6169 -2 387 209 9 67 chr3 2528936 2529012 -215508146 + MIR SINE MIR 30 100 -162 2036 165 45 8 chr3 2529012 2529364 -215507794 + MER47A DNA MER2_type 2 366 0 387 209 9 67 chr3 2529364 2529392 -215507766 + MIR SINE MIR 100 128 -134 2901 94 20 5 chr3 2529487 2529879 -215507279 + MLT2A1 LTR ERVL 1 398 -46 26 64 0 0 chr3 2529879 2529926 -215507232 + AT_rich Low_complexity Low_complexity 1 47 0 232 154 0 19 chr3 2529926 2529978 -215507180 + LTR66 LTR ERVL 404 454 -156 * 249 62 167 21 chr3 2529948 2529996 -215507162 + MLT2A1 LTR ERVL 399 453 0 44384 65 17 11 chr3 2529996 2532637 -215504521 + HERVL-A1-A1 LTR ERVL 1 2623 -3031 2982 6 0 0 chr3 2532637 2532955 -215504203 - AluYb8 SINE Alu 0 318 1 44384 65 17 11 chr3 2532955 2535929 -215501229 + HERVL-A1-A1 LTR ERVL 2623 5654 0 2656 85 66 33 chr3 2535929 2536324 -215500834 + MLT2A1 LTR ERVL 1 412 -32 248 0 31 0 chr3 2536324 2536356 -215500802 + (TA)n Simple_repeat Simple_repeat 2 34 0 2656 85 66 33 chr3 2536356 2536383 -215500775 + MLT2A1 LTR ERVL 412 437 -7 243 214 71 0 chr3 2536847 2536903 -215500255 - MER101 LTR ERV1 -146 328 269 828 234 100 13 chr3 2537174 2537413 -215499745 + MIR SINE MIR 3 262 0 181 378 41 10 chr3 2538010 2538108 -215499050 + MIR3 SINE MIR 11 111 -97 225 170 64 0 chr3 2538240 2538287 -215498871 + CT-rich Low_complexity Low_complexity 4 53 0 258 198 143 66 chr3 2538443 2538534 -215498624 - Charlie8 DNA MER1_type -2319 98 1 208 191 117 117 chr3 2539534 2539628 -215497530 - MIR3 SINE MIR -15 193 100 585 249 127 5 chr3 2540721 2540926 -215496232 + MIR SINE MIR 20 249 -13 540 239 57 19 chr3 2541094 2541253 -215495905 - MIR SINE MIR -84 178 14 588 311 31 40 chr3 2542226 2542448 -215494710 - MIR SINE MIR -15 247 28 243 294 9 64 chr3 2542521 2542630 -215494528 + L2 LINE L2 3193 3295 -18 579 271 94 10 chr3 2543118 2543310 -215493848 + MER3 DNA MER1_type 2 209 0 317 262 82 47 chr3 2543321 2543478 -215493680 - MER5A DNA MER1_type -10 179 7 190 359 47 0 chr3 2543672 2543736 -215493422 + L2 LINE L2 3186 3252 -20 215 286 16 0 chr3 2544148 2544211 -215492947 + L2 LINE L2 3209 3272 0 189 0 0 0 chr3 2544415 2544436 -215492722 + (CAA)n Simple_repeat Simple_repeat 1 21 0 229 356 59 0 chr3 2544546 2544647 -215492511 + MIR SINE MIR 107 213 -49 2142 148 22 63 chr3 2544724 2545170 -215491988 + MLT1C LTR MaLR 36 463 -4 1754 166 28 7 chr3 2545202 2545491 -215491667 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr3 2546772 2546796 -215490362 + AT_rich Low_complexity Low_complexity 1 24 0 658 191 0 48 chr3 2547414 2547515 -215489643 + MLT2B2 LTR ERVL 376 469 -46 180 0 0 0 chr3 2547515 2547535 -215489623 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 658 191 0 48 chr3 2547535 2547580 -215489578 + MLT2B2 LTR ERVL 469 515 0 355 200 45 3 chr3 2549159 2549277 -215487881 - MER63A DNA MER1_type -37 173 14 373 280 0 51 chr3 2549461 2549544 -215487614 - LTR33 LTR ERVL -7 514 441 1115 208 76 90 chr3 2549544 2549976 -215487182 - MSTC LTR MaLR -2 426 1 373 280 0 51 chr3 2549976 2550049 -215487109 - LTR33 LTR ERVL -80 441 366 527 203 23 30 chr3 2550051 2550184 -215486974 - LTR33 LTR ERVL -389 132 1 258 371 44 46 chr3 2550196 2550584 -215486574 - L2 LINE L2 -558 2756 2370 350 233 56 0 chr3 2550614 2550704 -215486454 + LTR33 LTR ERVL 163 257 -264 258 301 102 18 chr3 2550797 2550963 -215486195 - L2 LINE L2 -1003 2311 2132 189 0 0 0 chr3 2551655 2551676 -215485482 + (T)n Simple_repeat Simple_repeat 1 21 0 548 310 144 53 chr3 2551983 2552399 -215484759 + L2 LINE L2 2857 3310 -3 431 305 147 10 chr3 2552402 2552599 -215484559 - MIR SINE MIR -19 243 20 236 333 66 105 chr3 2553014 2553242 -215483916 - L2 LINE L2 -6 3266 3048 308 242 121 0 chr3 2553269 2553360 -215483798 + MIR SINE MIR 73 174 -88 962 204 0 17 chr3 2553753 2553929 -215483229 - AluJb SINE Alu -3 309 137 204 300 0 0 chr3 2554093 2554143 -215483015 - MIR SINE MIR -14 248 199 417 277 97 35 chr3 2554631 2554823 -215482335 - MIR SINE MIR -12 250 57 2099 122 0 3 chr3 2555046 2555342 -215481816 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 2556025 2556047 -215481111 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 533 296 69 0 chr3 2556072 2556231 -215480927 + MIR SINE MIR 76 245 -17 749 177 62 77 chr3 2558288 2558497 -215478661 - MER20 DNA MER1_type -13 206 1 255 255 0 0 chr3 2558632 2558683 -215478475 + L2 LINE L2 3263 3313 0 210 338 0 26 chr3 2560222 2560299 -215476859 - MIR SINE MIR -55 153 79 22 35 0 0 chr3 2560974 2561003 -215476155 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 12 47 chr3 2564076 2564245 -215472913 + C-rich Low_complexity Low_complexity 5 167 0 231 88 0 0 chr3 2564656 2564690 -215472468 + (GGA)n Simple_repeat Simple_repeat 3 36 0 21 57 0 0 chr3 2565171 2565206 -215471952 + GC_rich Low_complexity Low_complexity 1 35 0 791 243 56 42 chr3 2566716 2566930 -215470228 + MIR SINE MIR 28 244 -18 207 0 0 0 chr3 2568280 2568303 -215468855 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 447 283 9 9 chr3 2568401 2568507 -215468651 - MER81 DNA DNA 0 114 9 2755 105 11 3 chr3 2568668 2569029 -215468129 - THE1B LTR MaLR 0 364 1 271 236 0 18 chr3 2569030 2569085 -215468073 - MIR3 SINE MIR -46 162 109 358 192 0 14 chr3 2569252 2569325 -215467833 - L1ME4a LINE L1 -249 5872 5801 22 0 0 0 chr3 2569512 2569534 -215467624 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 62 0 chr3 2569713 2569826 -215467332 + MIR SINE MIR 1 120 -142 425 152 0 0 chr3 2569874 2569940 -215467218 + L1PA16 LINE L1 6095 6160 -6 4403 152 19 32 chr3 2569949 2570098 -215467060 + L1MB3 LINE L1 5386 5536 -647 2625 112 67 45 chr3 2570098 2570517 -215466641 + MSTA LTR MaLR 1 428 0 4403 152 19 32 chr3 2570517 2570787 -215466371 + L1MB3 LINE L1 5536 5808 -375 2506 111 36 30 chr3 2570787 2571149 -215466009 - THE1B LTR MaLR 0 364 1 4403 152 19 32 chr3 2571149 2571537 -215465621 + L1MB3 LINE L1 5808 6183 0 669 245 164 45 chr3 2571583 2571942 -215465216 - MLT1J1 LTR MaLR 0 446 45 377 323 0 0 chr3 2572967 2573060 -215464098 - MIR3 SINE MIR -7 201 109 291 274 16 0 chr3 2573114 2573176 -215463982 - MIR SINE MIR -108 100 38 1565 158 36 37 chr3 2573258 2573734 -215463424 + L1M2 LINE L1 5088 5562 -729 226 180 0 20 chr3 2573779 2573829 -215463329 + L1MCa LINE L1 2016 2064 -4362 * 278 261 23 0 chr3 2573816 2573904 -215463254 + L1MC4 LINE L1 6614 6703 -1339 1043 141 29 0 chr3 2574098 2574268 -215462890 - MLT1C LTR MaLR -285 182 8 1692 76 5 0 chr3 2574328 2574538 -215462620 + AluY SINE Alu 86 296 -15 12183 120 19 44 chr3 2574562 2574706 -215462452 + Tigger1 DNA MER2_type 1 147 -2271 1194 107 60 0 chr3 2574706 2574874 -215462284 - L1PB3 LINE L1 -1 6153 5976 12183 120 19 44 chr3 2574874 2575468 -215461690 + Tigger1 DNA MER2_type 147 755 -1663 2076 123 23 13 chr3 2575468 2575740 -215461418 + AluSq SINE Alu 1 278 -35 1113 71 24 0 chr3 2575740 2575908 -215461250 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 2076 123 23 13 chr3 2575908 2575945 -215461213 + AluSq SINE Alu 278 313 0 12183 120 19 44 chr3 2575945 2577190 -215459968 + Tigger1 DNA MER2_type 755 1934 -484 2387 150 20 93 chr3 2577190 2577683 -215459475 - LTR32 LTR ERVL 0 471 15 3196 140 10 6 chr3 2577683 2578169 -215458989 + Tigger1 DNA MER2_type 1930 2417 -1 435 274 42 53 chr3 2578269 2578459 -215458699 - MIR SINE MIR -36 226 39 299 452 25 0 chr3 2578652 2578809 -215458349 - L2 LINE L2 -12 3260 3100 * 616 292 31 5 chr3 2578807 2578999 -215458159 - MIR SINE MIR -1 261 65 343 304 9 9 chr3 2579202 2579317 -215457841 + MIR SINE MIR 137 251 -11 240 289 22 44 chr3 2579613 2579703 -215457455 + L3 LINE CR1 1488 1575 -2 466 305 72 6 chr3 2580985 2581152 -215456006 + MIR SINE MIR 37 214 -48 859 73 47 80 chr3 2581752 2581767 -215455391 + L1MA5A LINE L1 6153 6167 -130 1996 148 40 35 chr3 2581767 2582140 -215455018 + THE1C LTR MaLR 1 375 0 859 73 47 80 chr3 2582140 2582248 -215454910 + L1MA5A LINE L1 6167 6273 -24 495 105 53 0 chr3 2582248 2582274 -215454884 + MADE1 DNA Mariner 1 24 -56 2284 88 19 10 chr3 2582274 2582582 -215454576 - AluY SINE Alu 0 311 1 495 105 53 0 chr3 2582582 2582631 -215454527 + MADE1 DNA Mariner 24 80 0 859 73 47 80 chr3 2582631 2582656 -215454502 + L1MA5A LINE L1 6273 6297 0 1264 195 20 28 chr3 2583370 2583701 -215453457 - MLT2B3 LTR ERVL 0 554 231 1539 155 39 0 chr3 2583713 2583971 -215453187 - MLT2A2 LTR ERVL -185 268 1 832 287 108 25 chr3 2584065 2584379 -215452779 + MER102b DNA MER1_type 2 341 0 205 288 82 0 chr3 2584481 2584554 -215452604 + L2 LINE L2 3235 3313 0 239 281 67 11 chr3 2584562 2584651 -215452507 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 2585879 2586070 -215451088 - MIR SINE MIR -43 219 18 321 272 25 0 chr3 2586181 2586262 -215450896 - MER81 DNA DNA -5 109 27 280 184 0 20 chr3 2586285 2586334 -215450824 - MER81 DNA DNA -66 48 1 2554 124 5 22 chr3 2586513 2586883 -215450275 + THE1B LTR MaLR 1 364 0 335 320 49 0 chr3 2587141 2587263 -215449895 - MIR SINE MIR -32 230 103 405 263 75 0 chr3 2588190 2588323 -215448835 + LTR67 LTR ERVL 403 545 -12 1748 182 0 10 chr3 2588376 2588684 -215448474 - AluSx SINE Alu -7 305 1 181 263 288 12 chr3 2588770 2588850 -215448308 - MIR SINE MIR -63 145 44 2365 76 0 22 chr3 2588941 2589258 -215447900 + AluY SINE Alu 1 310 -1 321 318 77 43 chr3 2589594 2589827 -215447331 + MIR SINE MIR 5 245 -17 468 193 0 0 chr3 2590389 2590498 -215446660 + (TA)n Simple_repeat Simple_repeat 2 110 0 314 192 0 26 chr3 2590575 2590653 -215446505 + (CATA)n Simple_repeat Simple_repeat 2 77 0 261 276 35 0 chr3 2590653 2590740 -215446418 + L1MC4 LINE L1 6614 6703 -1339 231 272 0 22 chr3 2590732 2590824 -215446334 - L1MC4 LINE L1 -1339 6703 6614 * 357 208 0 0 chr3 2590825 2590902 -215446256 + (TA)n Simple_repeat Simple_repeat 1 77 0 316 283 0 22 chr3 2590902 2590994 -215446164 - L1MC4 LINE L1 -1339 6703 6614 239 267 47 0 chr3 2591004 2591090 -215446068 - L1MC4 LINE L1 -1339 6703 6614 435 211 0 0 chr3 2591091 2591186 -215445972 + (TA)n Simple_repeat Simple_repeat 2 96 0 229 261 0 22 chr3 2591186 2591278 -215445880 - L1MC4 LINE L1 -1339 6703 6614 252 214 0 0 chr3 2591279 2591335 -215445823 + (TA)n Simple_repeat Simple_repeat 1 56 0 192 97 0 0 chr3 2592013 2592044 -215445114 + (CA)n Simple_repeat Simple_repeat 1 31 0 431 143 0 39 chr3 2592217 2592294 -215444864 + AluY SINE Alu 208 281 -30 452 308 104 11 chr3 2593194 2593454 -215443704 - L2 LINE L2 0 3313 3030 269 238 179 12 chr3 2594080 2594164 -215442994 - MER5A DNA MER1_type -83 106 9 550 250 57 6 chr3 2594180 2594355 -215442803 - Charlie2 DNA MER1_type 0 2862 2679 1208 205 8 63 chr3 2594355 2594735 -215442423 - THE1C LTR MaLR 0 375 17 216 0 0 0 chr3 2596385 2596409 -215440749 + (TA)n Simple_repeat Simple_repeat 2 25 0 682 279 181 85 chr3 2598253 2599217 -215437941 + L3 LINE CR1 431 1487 -90 213 239 0 22 chr3 2599236 2599282 -215437876 + L2 LINE L2 3210 3254 -18 226 351 85 0 chr3 2599352 2599446 -215437712 + L2 LINE L2 3169 3270 -2 2587 110 11 8 chr3 2599977 2600331 -215436827 - THE1A LTR MaLR 0 355 1 5045 138 45 13 chr3 2600345 2601218 -215435940 + MER4D LTR ERV1 1 463 -2 183 42 0 0 chr3 2601315 2601339 -215435819 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 390 265 121 8 chr3 2601354 2601486 -215435672 - MIR SINE MIR -12 250 104 256 336 68 20 chr3 2601763 2601909 -215435249 - MIR3 SINE MIR -22 186 34 387 292 71 60 chr3 2602815 2602983 -215434175 + MIR3 SINE MIR 17 186 -22 432 204 60 156 chr3 2603613 2603882 -215433276 - MER112 DNA MER1_type 0 260 18 1030 258 28 60 chr3 2603884 2604237 -215432921 - LTR16A LTR ERVL -6 444 103 441 195 12 0 chr3 2604374 2604456 -215432702 - MER20 DNA MER1_type 0 219 137 1277 215 93 31 chr3 2604458 2604812 -215432346 + LTR52 LTR ERVL 4 379 -42 671 183 56 7 chr3 2604805 2604947 -215432211 - MER20 DNA MER1_type -65 154 6 * 2126 135 0 0 chr3 2605705 2606001 -215431157 - AluSg SINE Alu -14 296 1 1861 168 3 0 chr3 2606011 2606302 -215430856 - AluJb SINE Alu -20 292 1 425 289 0 18 chr3 2606666 2606780 -215430378 - MIR SINE MIR -61 147 36 283 87 22 0 chr3 2606990 2607036 -215430122 - L1MB8 LINE L1 0 6178 6132 1227 126 0 6 chr3 2607038 2607205 -215429953 - AluSg/x SINE Alu -16 296 131 3633 201 49 27 chr3 2607210 2607607 -215429551 - L1MB7 LINE L1 -37 6147 5760 1678 141 11 67 chr3 2607607 2607755 -215429403 - AluJb SINE Alu -34 278 152 2312 91 7 0 chr3 2607755 2608051 -215429107 - AluY SINE Alu -13 298 1 1678 141 11 67 chr3 2608051 2608186 -215428972 - AluJb SINE Alu -160 152 11 3633 201 49 27 chr3 2608186 2608688 -215428470 - L1MB7 LINE L1 -424 5760 5227 22 0 0 0 chr3 2608911 2608933 -215428225 + AT_rich Low_complexity Low_complexity 1 22 0 1272 169 132 33 chr3 2609380 2609652 -215427506 + AluJb SINE Alu 1 299 -13 246 289 33 22 chr3 2609706 2609796 -215427362 + MER94 DNA DNA 44 134 0 4526 28 4 0 chr3 2610599 2611101 -215426057 + L1PA4 LINE L1 5651 6154 -1 323 263 61 44 chr3 2612120 2612234 -215424924 - MIR3 SINE MIR -46 162 47 322 293 95 0 chr3 2612364 2612480 -215424678 + MIR SINE MIR 65 191 -71 345 317 0 0 chr3 2612618 2612700 -215424458 + L2 LINE L2 3232 3313 0 219 293 89 57 chr3 2612838 2612961 -215424197 + MIR3 SINE MIR 28 154 -54 773 233 41 116 chr3 2612961 2613305 -215423853 - MER102b DNA MER1_type -22 319 2 189 0 0 0 chr3 2614202 2614223 -215422935 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 627 242 56 25 chr3 2614240 2614401 -215422757 + MIR SINE MIR 24 189 -73 14488 37 1 3 chr3 2614405 2616150 -215421008 - L1PA2 LINE L1 -1444 4702 2961 8225 22 0 0 chr3 2616150 2617615 -215419543 + L1PA2 LINE L1 4691 6155 0 369 319 35 0 chr3 2617820 2617933 -215419225 - L2 LINE L2 -1 3271 3155 443 275 126 33 chr3 2618070 2618252 -215418906 - MIR SINE MIR -6 256 58 1971 139 85 20 chr3 2619141 2619493 -215417665 + THE1C LTR MaLR 1 375 0 2647 24 0 0 chr3 2619604 2619901 -215417257 + AluYb8 SINE Alu 19 315 -3 1132 246 113 19 chr3 2620010 2620380 -215416778 + MLT1E2 LTR MaLR 1 405 -221 921 241 0 5 chr3 2620498 2620689 -215416469 + MLT1D LTR MaLR 316 505 0 231 250 0 0 chr3 2620693 2620741 -215416417 - MIR SINE MIR -92 116 69 437 259 64 64 chr3 2620784 2621050 -215416108 + L2 LINE L2 3047 3312 -1 286 226 250 32 chr3 2621106 2621230 -215415928 - MIR3 SINE MIR -25 183 33 795 183 0 0 chr3 2621664 2621784 -215415374 - FLAM_A SINE Alu -13 120 1 299 348 17 8 chr3 2622767 2622885 -215414273 + MIR3 SINE MIR 41 159 -49 661 194 12 0 chr3 2622958 2623118 -215414040 + CT-rich Low_complexity Low_complexity 1 162 0 1814 193 0 0 chr3 2623129 2623424 -215413734 - AluJo SINE Alu -17 295 1 245 268 18 0 chr3 2623534 2623590 -215413568 + MER102b DNA MER1_type 285 341 0 1311 219 15 8 chr3 2623914 2624179 -215412979 + MLT1H LTR MaLR 8 274 -275 1942 141 18 0 chr3 2624179 2624463 -215412695 + AluSx SINE Alu 9 297 -15 1252 198 108 35 chr3 2624558 2624939 -215412219 + MLT2B1 LTR ERVL 1 371 -43 2730 96 19 16 chr3 2624939 2625302 -215411856 - THE1B LTR MaLR 0 364 1 1252 198 108 35 chr3 2625302 2625350 -215411808 + MLT2B1 LTR ERVL 371 414 0 272 187 53 67 chr3 2625358 2625433 -215411725 - MIR SINE MIR -104 104 31 248 265 81 37 chr3 2627679 2627815 -215409343 - MER20B DNA MER1_type -147 636 495 311 254 9 118 chr3 2627920 2628030 -215409128 - MER81 DNA DNA -16 98 1 2194 144 57 36 chr3 2628621 2629009 -215408149 + MSTD LTR MaLR 1 396 0 2482 63 0 3 chr3 2629115 2629436 -215407722 - AluY SINE Alu 0 330 11 439 195 80 9 chr3 2631323 2631436 -215405722 - LTR16C LTR ERVL 0 491 371 534 172 57 146 chr3 2631452 2631644 -215405514 + MER21B LTR ERV1 13 187 -676 1238 190 0 5 chr3 2631695 2631911 -215405247 - AluJo SINE Alu -14 298 84 1501 225 35 52 chr3 2631949 2632353 -215404805 + MER21B LTR ERV1 360 756 -107 918 236 90 55 chr3 2632373 2632716 -215404442 - LTR16C LTR ERVL -120 371 17 2505 134 59 20 chr3 2632767 2633176 -215403982 + MSTA LTR MaLR 4 428 0 255 133 0 0 chr3 2633510 2633555 -215403603 + (TG)n Simple_repeat Simple_repeat 1 45 0 2193 128 0 0 chr3 2635319 2635616 -215401542 - AluSx SINE Alu -10 302 6 654 309 94 62 chr3 2635806 2635905 -215401253 - L2 LINE L2 -49 3264 3170 2947 204 65 24 chr3 2635905 2636531 -215400627 - MER82 DNA MER2_type -1 652 1 654 309 94 62 chr3 2636531 2637321 -215399837 - L2 LINE L2 -143 3170 2348 1416 279 22 16 chr3 2637321 2637690 -215399468 + MLT1G1 LTR MaLR 16 386 -209 746 312 69 52 chr3 2637812 2638273 -215398885 - L2 LINE L2 -952 2362 1894 267 337 163 0 chr3 2638352 2638518 -215398640 - MIR SINE MIR -1 261 69 304 197 53 92 chr3 2638584 2638736 -215398422 + L1MC5 LINE L1 7650 7795 -166 271 270 36 36 chr3 2639930 2640041 -215397117 + L2 LINE L2 3203 3313 0 1557 239 59 11 chr3 2641058 2641430 -215395728 + MLT1B LTR MaLR 1 390 0 189 49 24 49 chr3 2641553 2641594 -215395564 + (TATAA)n Simple_repeat Simple_repeat 3 42 0 987 196 49 85 chr3 2641638 2641944 -215395214 + MLT1C LTR MaLR 1 295 -172 1894 199 26 46 chr3 2641959 2642417 -215394741 - LTR2 LTR ERV1 0 449 1 508 62 0 0 chr3 2642419 2642483 -215394675 + MADE1 DNA Mariner 17 80 0 574 255 16 10 chr3 2642492 2642671 -215394487 + MLT1C LTR MaLR 323 467 0 439 244 15 69 chr3 2642925 2643056 -215394102 - MIR SINE MIR -92 170 47 2784 229 21 57 chr3 2643369 2644086 -215393072 + LTR8 LTR ERV1 1 691 0 272 195 13 39 chr3 2644340 2644417 -215392741 + A-rich Low_complexity Low_complexity 4 78 0 347 265 71 0 chr3 2644675 2644773 -215392385 + MIR3 SINE MIR 81 185 -23 1500 133 0 0 chr3 2645401 2645626 -215391532 + L1P LINE L1 4890 5114 -1032 220 314 119 22 chr3 2645964 2646149 -215391009 + MIR SINE MIR 48 250 -12 206 273 0 0 chr3 2646116 2646160 -215390998 + L2 LINE L2 3263 3306 -7 * 6796 90 7 6 chr3 2647518 2648582 -215388576 + L1PA12 LINE L1 5104 6168 0 500 297 106 29 chr3 2648772 2648921 -215388237 + L1ME4a LINE L1 5540 5676 -445 2108 100 7 0 chr3 2648921 2649230 -215387928 - AluSx SINE Alu 0 311 1 500 297 106 29 chr3 2649230 2649419 -215387739 + L1ME4a LINE L1 5676 5905 -216 21 57 0 0 chr3 2649494 2649529 -215387629 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 2650202 2650223 -215386935 + AT_rich Low_complexity Low_complexity 1 21 0 1715 126 4 12 chr3 2650270 2650525 -215386633 + AluJb SINE Alu 17 269 -43 255 214 121 79 chr3 2650535 2650675 -215386483 + MIR SINE MIR 66 211 -51 2579 139 10 5 chr3 2650989 2651377 -215385781 + MLT1B LTR MaLR 1 390 0 912 231 62 5 chr3 2652027 2652235 -215384923 + MIR SINE MIR 33 252 -10 333 318 9 0 chr3 2652359 2652466 -215384692 - MIR SINE MIR -1 261 154 869 296 33 36 chr3 2652467 2652798 -215384360 - MLT1I LTR MaLR 0 409 80 218 284 65 110 chr3 2652839 2652994 -215384164 - MIR SINE MIR -105 157 10 1729 206 116 12 chr3 2653034 2653457 -215383701 + MLT1C LTR MaLR 1 467 0 296 243 71 48 chr3 2653536 2653678 -215383480 + L2 LINE L2 3011 3268 -4 312 288 135 24 chr3 2653902 2654072 -215383086 - LTR16A LTR ERVL -2 448 260 216 270 16 32 chr3 2654665 2654728 -215382430 + L2 LINE L2 3252 3313 0 653 270 76 45 chr3 2655230 2655585 -215381573 + MLT1K LTR MaLR 170 535 -53 5842 157 22 24 chr3 2655590 2656667 -215380491 - L1MA9 LINE L1 0 6312 5237 298 189 0 0 chr3 2656669 2656722 -215380436 + MLT1K LTR MaLR 525 577 -11 778 250 81 21 chr3 2657464 2657700 -215379458 - MIR SINE MIR -11 251 2 21 36 0 0 chr3 2658123 2658151 -215379007 + AT_rich Low_complexity Low_complexity 1 28 0 210 259 134 9 chr3 2658838 2658950 -215378208 + MIR3 SINE MIR 78 203 -5 2585 23 3 10 chr3 2659226 2659525 -215377633 + AluY SINE Alu 1 297 -14 1432 267 75 50 chr3 2659660 2660262 -215376896 + MER21B LTR ERV1 98 714 -149 666 303 0 15 chr3 2660413 2660611 -215376547 - MIR SINE MIR -49 213 19 404 294 9 9 chr3 2660636 2660745 -215376413 + MIR SINE MIR 154 262 0 597 260 25 69 chr3 2662012 2662064 -215375094 - L2 LINE L2 0 3313 3260 1645 145 0 11 chr3 2662064 2662326 -215374832 - AluJo SINE Alu -3 309 51 597 260 25 69 chr3 2662326 2662477 -215374681 - L2 LINE L2 -53 3260 3119 667 282 29 67 chr3 2662513 2662857 -215374301 - L2 LINE L2 -343 2971 2641 294 281 65 51 chr3 2662930 2663095 -215374063 + MIR3 SINE MIR 34 200 -8 4488 176 49 59 chr3 2663897 2664944 -215372214 + L1MA9 LINE L1 5211 6274 -38 256 100 80 0 chr3 2664980 2665030 -215372128 + L1MA9 LINE L1 6221 6274 -38 2116 178 117 42 chr3 2665164 2665768 -215371390 - MLT1E2 LTR MaLR 0 626 1 392 246 111 8 chr3 2665800 2665926 -215371232 - LTR16C LTR ERVL 0 491 353 217 243 63 12 chr3 2666090 2666175 -215370983 - MIR SINE MIR -66 142 70 301 231 106 48 chr3 2666586 2666690 -215370468 + MIR SINE MIR 22 131 -131 442 240 68 48 chr3 2666756 2666903 -215370255 - MIR3 SINE MIR -63 145 15 709 297 122 30 chr3 2667424 2667899 -215369259 - L2 LINE L2 0 3313 2763 553 217 35 0 chr3 2668769 2668884 -215368274 - MER5A DNA MER1_type -22 167 49 1032 62 0 0 chr3 2668884 2669029 -215368129 + (ATG)n Simple_repeat Simple_repeat 1 145 0 188 347 97 35 chr3 2669029 2669059 -215368099 + MER5B DNA MER1_type 150 177 -1 540 309 124 0 chr3 2669797 2670014 -215367144 - MIR SINE MIR -3 259 16 29 28 0 0 chr3 2670597 2670633 -215366525 + AT_rich Low_complexity Low_complexity 1 36 0 785 142 24 8 chr3 2671072 2671199 -215365959 - MER74B LTR ERVL -3 619 491 3951 147 31 38 chr3 2671205 2671921 -215365237 - MER50 LTR ERV1 -23 711 1 1907 202 58 32 chr3 2671924 2672355 -215364803 - MER74B LTR ERVL -126 496 55 254 306 83 0 chr3 2672652 2672760 -215364398 - MIR SINE MIR -73 189 73 328 264 60 39 chr3 2673503 2673685 -215363473 - MIR SINE MIR 0 262 77 369 0 0 0 chr3 2675244 2675285 -215361873 + (A)n Simple_repeat Simple_repeat 1 41 0 381 278 93 0 chr3 2676013 2676121 -215361037 + MIR3 SINE MIR 91 208 0 689 332 43 8 chr3 2676263 2676498 -215360660 - MIR SINE MIR 0 262 20 434 327 63 33 chr3 2677610 2677910 -215359248 + L2 LINE L2 3005 3313 0 395 321 45 0 chr3 2678108 2678242 -215358916 - L2 LINE L2 0 3272 3133 476 285 58 7 chr3 2678741 2678878 -215358280 + MIR SINE MIR 28 171 -91 23 0 0 0 chr3 2679354 2679377 -215357781 + AT_rich Low_complexity Low_complexity 1 23 0 3135 168 26 22 chr3 2679384 2680005 -215357153 - L1MB5 LINE L1 -13 6161 5539 21 36 0 0 chr3 2680193 2680221 -215356937 + AT_rich Low_complexity Low_complexity 1 28 0 3419 134 11 0 chr3 2680388 2680909 -215356249 - MER1A DNA MER1_type -2 527 1 197 222 48 63 chr3 2681395 2681458 -215355700 - L2 LINE L2 0 3313 3252 493 320 100 42 chr3 2681813 2682194 -215354964 + L2 LINE L2 2829 3231 -41 225 65 0 0 chr3 2682737 2682768 -215354390 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 42 0 0 chr3 2683655 2683679 -215353479 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1152 309 45 44 chr3 2683807 2684335 -215352823 - MLT1K LTR MaLR -37 551 23 336 102 0 0 chr3 2684353 2684402 -215352756 + (TG)n Simple_repeat Simple_repeat 1 49 0 315 0 0 0 chr3 2684401 2684436 -215352722 + (GA)n Simple_repeat Simple_repeat 1 35 0 * 591 234 61 61 chr3 2684462 2684723 -215352435 + MLT1H LTR MaLR 40 300 -249 225 281 0 0 chr3 2684839 2684903 -215352255 + MLT1H LTR MaLR 484 547 -2 1617 176 3 24 chr3 2685561 2685891 -215351267 - AluJo SINE Alu 0 324 1 306 323 144 20 chr3 2686621 2686816 -215350342 + MIR SINE MIR 40 258 -4 217 268 0 18 chr3 2687171 2687227 -215349931 - MIR3 SINE MIR -23 185 131 307 354 0 15 chr3 2688446 2688576 -215348582 - MIR3 SINE MIR -69 139 12 314 284 21 100 chr3 2688852 2689042 -215348116 - MER102a DNA MER1_type -4 326 152 3745 150 50 17 chr3 2689106 2689824 -215347334 + Tigger2 DNA MER2_type 3 744 -1974 1509 126 16 0 chr3 2689890 2690144 -215347014 + Tigger2 DNA MER2_type 2461 2718 0 427 288 56 30 chr3 2690247 2690445 -215346713 + L3 LINE CR1 1043 1245 -332 455 221 174 35 chr3 2690658 2690830 -215346328 - MER58C DNA MER1_type -19 196 1 294 257 109 0 chr3 2690969 2691070 -215346088 + MER103 DNA DNA 9 120 -46 549 80 0 0 chr3 2691123 2691198 -215345960 + (CA)n Simple_repeat Simple_repeat 2 76 0 2333 35 11 0 chr3 2691213 2691500 -215345658 - AluY SINE Alu -21 290 1 1395 187 28 0 chr3 2692035 2692319 -215344839 - L1MA4A LINE L1 -11 6292 6001 286 332 103 23 chr3 2692454 2692668 -215344490 + MIR SINE MIR 30 260 -2 3227 160 22 2 chr3 2692951 2693490 -215343668 - MER44D DNA MER2_type 0 605 1 956 285 0 12 chr3 2693803 2694049 -215343109 - MIR SINE MIR -17 245 3 1077 168 16 16 chr3 2694049 2694239 -215342919 + AluJo SINE Alu 112 301 -11 3119 221 59 9 chr3 2694252 2695525 -215341633 + L1MB7 LINE L1 4844 6184 0 7048 132 14 18 chr3 2695701 2697804 -215339354 - L1PA13 LINE L1 -24 6139 4052 1889 174 17 6 chr3 2698654 2698999 -215338159 - MER93b LTR ERV1 -24 349 1 594 220 0 38 chr3 2699012 2699144 -215338014 - MIR3 SINE MIR -11 197 71 274 299 28 9 chr3 2699185 2699292 -215337866 - MIR3 SINE MIR -10 198 90 187 304 104 55 chr3 2699613 2699814 -215337344 - MIR3 SINE MIR -45 217 2 2561 52 0 0 chr3 2699833 2700141 -215337017 - AluY SINE Alu -3 308 1 330 303 189 0 chr3 2702083 2702215 -215334943 - MIR SINE MIR -8 254 98 183 283 54 22 chr3 2704471 2704563 -215332595 - MIR SINE MIR 0 262 168 230 250 43 43 chr3 2705870 2705962 -215331196 - MIR SINE MIR -75 187 96 601 286 49 16 chr3 2706750 2706935 -215330223 + MIR SINE MIR 11 201 -61 237 263 0 0 chr3 2707324 2707381 -215329777 + L2 LINE L2 3204 3260 -12 229 271 42 93 chr3 2707482 2707600 -215329558 + L2 LINE L2 3145 3256 -16 206 103 0 26 chr3 2708373 2708412 -215328746 + (TC)n Simple_repeat Simple_repeat 1 38 0 1776 230 113 33 chr3 2709495 2710073 -215327085 + MLT1E2 LTR MaLR 3 626 0 233 321 73 22 chr3 2710167 2710304 -215326854 + MIR SINE MIR 52 195 -67 419 215 15 0 chr3 2710599 2710705 -215326453 - MER5A DNA MER1_type -78 111 4 309 248 88 40 chr3 2712129 2712254 -215324904 - L1ME LINE L1 -394 5727 5597 232 338 59 0 chr3 2712507 2712575 -215324583 - L2 LINE L2 0 3272 3201 189 0 0 0 chr3 2712752 2712773 -215324385 + (CATA)n Simple_repeat Simple_repeat 4 24 0 542 215 18 6 chr3 2712875 2713032 -215324126 - L1P4 LINE L1 -536 5630 5468 6158 129 83 24 chr3 2713374 2714536 -215322622 + Tigger3b DNA MER2_type 1 1231 0 21 0 0 0 chr3 2714593 2714614 -215322544 + AT_rich Low_complexity Low_complexity 1 21 0 536 262 0 0 chr3 2715036 2715177 -215321981 + L1MA10 LINE L1 6190 6330 -4 256 349 113 5 chr3 2716198 2716410 -215320748 - L2 LINE L2 0 3313 3079 653 194 47 29 chr3 2716559 2716729 -215320429 - MER5B DNA MER1_type 0 178 6 555 274 27 43 chr3 2716736 2716922 -215320236 - MER5A DNA MER1_type 0 189 7 9960 138 29 1 chr3 2717208 2718882 -215318276 - Tigger1 DNA MER2_type -4 2414 694 2657 158 16 28 chr3 2718880 2719381 -215317777 - Tigger1 DNA MER2_type -1919 499 5 * 835 192 123 78 chr3 2719441 2719629 -215317529 - MLT1A1 LTR MaLR -17 348 137 2293 116 0 3 chr3 2719629 2719932 -215317226 - AluSg SINE Alu -8 302 1 835 192 123 78 chr3 2719932 2720076 -215317082 - MLT1A1 LTR MaLR -228 137 1 4781 163 30 5 chr3 2720606 2721644 -215315514 + L1PA16 LINE L1 5102 6163 -3 266 293 91 10 chr3 2722419 2722518 -215314640 - MIR SINE MIR -70 192 86 426 176 88 0 chr3 2722524 2722615 -215314543 - L2 LINE L2 -4 3268 3170 2523 71 0 0 chr3 2722693 2723003 -215314155 + AluY SINE Alu 1 310 -1 351 313 41 27 chr3 2723044 2723191 -215313967 - MIR SINE MIR -18 244 96 289 365 0 0 chr3 2724234 2724319 -215312839 + MIR SINE MIR 62 146 -62 267 109 0 43 chr3 2724340 2724386 -215312772 + MLT2B1 LTR ERVL 473 516 -4 1987 235 38 8 chr3 2724390 2725016 -215312142 + ERVL LTR ERVL 1 662 -5030 1259 211 99 0 chr3 2725187 2725471 -215311687 + ERVL LTR ERVL 690 1001 -4763 604 242 20 6 chr3 2725853 2726008 -215311150 + MLT1D LTR MaLR 322 442 -63 432 0 0 0 chr3 2726504 2726552 -215310606 + (TG)n Simple_repeat Simple_repeat 2 49 0 1729 137 17 30 chr3 2726872 2727171 -215309987 + AluSx SINE Alu 9 303 -9 533 218 247 6 chr3 2727171 2727341 -215309817 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 2727775 2727901 -215309257 + MIR SINE MIR 20 146 -116 1665 151 17 31 chr3 2728898 2729189 -215307969 - AluJb SINE Alu -17 295 9 226 229 0 0 chr3 2729709 2729770 -215307388 + T-rich Low_complexity Low_complexity 1 61 0 8147 14 0 0 chr3 2729772 2731005 -215306153 - L1HS LINE L1 0 6155 4923 833 129 103 189 chr3 2731241 2731375 -215305783 + MER33 DNA MER1_type 1 145 -2440 1720 167 20 7 chr3 2731375 2731669 -215305489 - AluJb SINE Alu -14 298 1 833 129 103 189 chr3 2731669 2731884 -215305274 + MER33 DNA MER1_type 145 320 -4 533 236 48 36 chr3 2732111 2732276 -215304882 - MER5B DNA MER1_type -1 177 11 287 367 17 0 chr3 2732564 2732684 -215304474 + MIR SINE MIR 8 129 -133 854 131 77 0 chr3 2732873 2733003 -215304155 - FRAM SINE Alu -17 159 20 624 99 148 10 chr3 2733052 2733153 -215304005 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 2733158 2733181 -215303977 + AT_rich Low_complexity Low_complexity 1 23 0 4587 91 21 21 chr3 2733652 2733843 -215303315 + PABL_A LTR ERV1 1 191 -469 2348 93 0 7 chr3 2733843 2734153 -215303005 - AluSx SINE Alu -4 308 1 4587 91 21 21 chr3 2734153 2734612 -215302546 + PABL_A LTR ERV1 190 651 -9 1828 97 37 23 chr3 2736219 2736519 -215300639 - AluSq SINE Alu -9 304 1 1021 210 189 7 chr3 2737077 2737291 -215299867 + MER2 DNA MER2_type 1 283 -61 2314 92 0 0 chr3 2737291 2737586 -215299572 - AluSx SINE Alu -13 299 5 1021 210 189 7 chr3 2737586 2737662 -215299496 + MER2 DNA MER2_type 283 344 0 266 50 25 0 chr3 2737662 2737702 -215299456 + (GA)n Simple_repeat Simple_repeat 1 41 0 746 278 72 30 chr3 2737737 2738100 -215299058 + L1M4 LINE L1 3292 3669 -2477 386 300 55 9 chr3 2738737 2738847 -215298311 + L2 LINE L2 3153 3267 -5 1805 132 69 0 chr3 2738970 2739259 -215297899 - AluSx SINE Alu -3 309 1 477 290 95 68 chr3 2739430 2739651 -215297507 - MIR SINE MIR -34 228 2 359 337 53 60 chr3 2739652 2740042 -215297116 + L2 LINE L2 2686 3074 -198 1105 184 120 5 chr3 2741481 2741698 -215295460 + AluJb SINE Alu 58 299 -13 1702 187 33 3 chr3 2741839 2742138 -215295020 + AluJo SINE Alu 1 308 -4 875 144 0 41 chr3 2747131 2747277 -215289881 + AluSg/x SINE Alu 135 274 -36 753 215 7 0 chr3 2747532 2747681 -215289477 - L1 LINE L1 -1063 5083 4934 943 227 20 49 chr3 2748561 2748808 -215288350 + MIR SINE MIR 2 241 -21 1096 157 8 44 chr3 2749858 2750106 -215287052 - AluJb SINE Alu -5 307 69 22 56 0 0 chr3 2750414 2750450 -215286708 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 2750492 2750513 -215286645 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 2750517 2750541 -215286617 + GC_rich Low_complexity Low_complexity 1 24 0 36 26 0 0 chr3 2750586 2750624 -215286534 + GC_rich Low_complexity Low_complexity 1 38 0 8217 61 2 2 chr3 2752040 2753087 -215284071 + L1P LINE L1 1098 2144 -4002 185 315 0 0 chr3 2753295 2753349 -215283809 - L2 LINE L2 -8 3264 3211 320 116 0 0 chr3 2753421 2753480 -215283678 + Alu SINE Alu 1 40 -263 695 125 0 0 chr3 2753480 2753576 -215283582 + AluSg/x SINE Alu 206 301 -9 180 152 0 0 chr3 2754141 2754174 -215282984 + (CAT)n Simple_repeat Simple_repeat 1 33 0 756 135 0 0 chr3 2754362 2754473 -215282685 + MLT2A1 LTR ERVL 288 398 -46 457 196 17 12 chr3 2754489 2754662 -215282496 + (TA)n Simple_repeat Simple_repeat 2 175 0 312 279 23 0 chr3 2754665 2754751 -215282407 - L1MC4 LINE L1 -1340 6702 6615 453 147 0 0 chr3 2754752 2754847 -215282311 + (TA)n Simple_repeat Simple_repeat 2 96 0 418 73 0 0 chr3 2754855 2754910 -215282248 + MLT2A2 LTR ERVL 399 453 0 3754 177 29 2 chr3 2754912 2755535 -215281623 + MER52-int LTR ERV1 2400 3039 -4052 21 71 0 0 chr3 2755687 2755729 -215281429 + AT_rich Low_complexity Low_complexity 1 42 0 2680 119 3 13 chr3 2755849 2756228 -215280930 + THE1C LTR MaLR 1 375 0 2929 93 82 102 chr3 2756228 2756755 -215280403 + THE1C-int LTR MaLR 1 516 -1064 9262 45 4 0 chr3 2756879 2758009 -215279149 - L1P LINE L1 -1184 4962 3828 26 30 0 0 chr3 2758758 2758791 -215278367 + AT_rich Low_complexity Low_complexity 1 33 0 227 261 54 43 chr3 2759639 2759731 -215277427 + MIR SINE MIR 103 195 -67 1663 156 3 52 chr3 2761161 2761489 -215275669 - AluJb SINE Alu 0 312 1 180 200 0 60 chr3 2761507 2761557 -215275601 - MIR SINE MIR -106 156 110 1665 157 18 11 chr3 2762115 2762401 -215274757 + AluJo SINE Alu 1 288 -24 207 187 36 65 chr3 2764108 2764247 -215272911 + (CATAA)n Simple_repeat Simple_repeat 5 139 0 1538 301 175 12 chr3 2764821 2765627 -215271531 - L3 LINE CR1 -89 1488 552 1379 186 50 47 chr3 2766051 2766195 -215270963 + AluJo SINE Alu 1 143 -169 1451 198 0 62 chr3 2766195 2766518 -215270640 + AluSx SINE Alu 1 303 -9 1379 186 50 47 chr3 2766518 2766674 -215270484 + AluJo SINE Alu 143 302 -10 406 178 140 19 chr3 2768185 2768292 -215268866 + MIR SINE MIR 103 222 -40 207 0 0 0 chr3 2768637 2768660 -215268498 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 2769198 2769261 -215267897 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 2769571 2769601 -215267557 + AT_rich Low_complexity Low_complexity 1 30 0 243 333 0 41 chr3 2770650 2770821 -215266337 + GA-rich Low_complexity Low_complexity 4 167 0 * 251 288 23 11 chr3 2770726 2770832 -215266326 + GA-rich Low_complexity Low_complexity 1 107 0 1298 181 42 0 chr3 2771058 2771273 -215265885 + MER58A DNA MER1_type 1 224 0 1974 223 47 10 chr3 2771291 2771798 -215265360 + L1M4 LINE L1 4413 4938 -1208 309 350 57 13 chr3 2771956 2772113 -215265045 - MIR3 SINE MIR 0 208 45 876 169 0 0 chr3 2772196 2772326 -215264832 + FLAM_A SINE Alu 3 132 -1 2208 114 23 0 chr3 2772910 2773209 -215263949 - AluJb SINE Alu -6 306 1 2071 130 0 3 chr3 2773311 2773604 -215263554 - AluSg SINE Alu -16 294 3 395 283 145 0 chr3 2774416 2774554 -215262604 + MIR SINE MIR 40 197 -65 930 37 0 0 chr3 2775008 2775116 -215262042 - L1PA4 LINE L1 -2 6153 6046 1857 146 4 4 chr3 2775190 2775470 -215261688 + AluSx SINE Alu 1 280 -32 358 306 73 8 chr3 2775646 2775770 -215261388 - L2 LINE L2 0 3272 3141 2287 104 0 3 chr3 2776256 2776555 -215260603 + AluSx SINE Alu 1 298 -14 341 315 109 25 chr3 2776902 2777140 -215260018 + L2 LINE L2 2232 2489 -825 280 226 252 9 chr3 2777241 2777356 -215259802 + MIR3 SINE MIR 40 182 -26 2314 72 6 28 chr3 2777455 2777773 -215259385 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 2777955 2778097 -215259061 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 2778163 2778185 -215258973 + AT_rich Low_complexity Low_complexity 1 22 0 194 331 23 62 chr3 2778220 2778349 -215258809 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 2778420 2778682 -215258476 + AluSc SINE Alu 5 292 -17 209 296 14 28 chr3 2779720 2779791 -215257367 + MIR SINE MIR 20 89 -119 232 235 123 0 chr3 2779980 2780061 -215257097 + MIR3 SINE MIR 102 192 -16 212 342 13 0 chr3 2780689 2780768 -215256390 - MIR SINE MIR -59 149 70 1409 142 0 0 chr3 2781107 2781325 -215255833 - L1PB3 LINE L1 -3 6151 5934 24 53 0 0 chr3 2782002 2782040 -215255118 + AT_rich Low_complexity Low_complexity 1 38 0 239 119 0 51 chr3 2784111 2784170 -215252988 + (CTA)n Simple_repeat Simple_repeat 1 56 0 423 246 53 18 chr3 2784793 2784907 -215252251 + MIR3 SINE MIR 14 131 -77 1851 146 35 0 chr3 2785931 2786102 -215251056 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 2786102 2786148 -215251010 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1851 146 35 0 chr3 2786148 2786264 -215250894 - AluSx SINE Alu -200 112 1 228 109 455 0 chr3 2786653 2786708 -215250450 + MADE1 DNA Mariner 1 80 0 2163 100 7 0 chr3 2787159 2787470 -215249688 + AluSx SINE Alu 1 313 0 1932 163 0 0 chr3 2787489 2787777 -215249381 - AluJb SINE Alu -19 293 6 982 124 0 7 chr3 2787777 2787914 -215249244 - AluJb SINE Alu -176 136 1 281 136 0 0 chr3 2787914 2787958 -215249200 - Alu SINE Alu -256 44 1 * 501 134 93 64 chr3 2787958 2788129 -215249029 + Charlie5 DNA MER1_type 2445 2620 0 534 236 48 36 chr3 2788356 2788521 -215248637 - MER5B DNA MER1_type -1 177 11 272 375 17 0 chr3 2788816 2788936 -215248222 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 2789125 2789255 -215247903 - FRAM SINE Alu -17 159 20 558 109 148 10 chr3 2789304 2789405 -215247753 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 2789410 2789433 -215247725 + AT_rich Low_complexity Low_complexity 1 23 0 4312 90 17 21 chr3 2789904 2790098 -215247060 + PABL_A LTR ERV1 1 194 -466 2223 94 0 7 chr3 2790098 2790395 -215246763 - AluSx SINE Alu -17 295 1 4312 90 17 21 chr3 2790395 2790854 -215246304 + PABL_A LTR ERV1 194 651 -9 201 161 0 0 chr3 2792001 2792032 -215245126 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 1209 267 73 9 chr3 2792622 2792963 -215244195 + MLT1E2 LTR MaLR 264 626 0 411 320 130 8 chr3 2794151 2794404 -215242754 - L3 LINE CR1 -6 1571 1288 258 337 101 22 chr3 2794417 2794595 -215242563 - MIR3 SINE MIR -14 194 3 270 298 158 25 chr3 2794662 2794820 -215242338 + MIR SINE MIR 47 225 -37 461 256 105 42 chr3 2794862 2795053 -215242105 - L2 LINE L2 -6 3307 3105 780 133 5 1 chr3 2795058 2795071 -215242087 + L1P4 LINE L1 5386 5397 -771 4649 81 3 3 chr3 2795071 2795699 -215241459 - L1PA10 LINE L1 0 6168 5541 780 133 5 1 chr3 2795699 2795826 -215241332 + L1PA10 LINE L1 5397 5531 -637 502 331 89 15 chr3 2795829 2796172 -215240986 - L2 LINE L2 -251 3062 2698 401 309 46 29 chr3 2796172 2796347 -215240811 - MER5B DNA MER1_type 0 178 1 390 195 121 10 chr3 2796913 2797061 -215240097 + MER20 DNA MER1_type 1 219 0 187 275 288 0 chr3 2797220 2797300 -215239858 - L2 LINE L2 -8 3264 3162 362 330 58 19 chr3 2797528 2797734 -215239424 - MLT1H LTR MaLR -296 253 40 22 56 0 0 chr3 2798518 2798554 -215238604 + AT_rich Low_complexity Low_complexity 1 36 0 318 340 32 26 chr3 2799513 2799669 -215237489 + MIR3 SINE MIR 33 189 -19 336 292 149 30 chr3 2799869 2800037 -215237121 + MIR3 SINE MIR 3 190 -18 273 362 58 31 chr3 2801479 2801703 -215235455 + MIR SINE MIR 33 262 0 205 191 16 48 chr3 2801840 2801903 -215235255 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 459 314 66 43 chr3 2802016 2802319 -215234839 - L1ME LINE L1 -318 5803 5494 11425 181 77 8 chr3 2802414 2805362 -215231796 + L1ME1 LINE L1 5 3175 -3207 3001 240 73 2 chr3 2805360 2806292 -215230866 + L1ME1 LINE L1 4187 5184 -1198 * 484 142 150 0 chr3 2806286 2806406 -215230752 - L1ME LINE L1 -455 5711 5574 * 579 260 115 40 chr3 2806409 2806705 -215230453 + L1ME1 LINE L1 6076 6393 -9 304 289 65 20 chr3 2807019 2807220 -215229938 + L1ME4a LINE L1 4616 4825 -1321 190 242 65 16 chr3 2807439 2807501 -215229657 - L3b LINE CR1 -118 1465 1401 366 312 48 32 chr3 2807875 2808061 -215229097 + L1ME4a LINE L1 5768 5956 -165 192 250 0 23 chr3 2808341 2808385 -215228773 - L2 LINE L2 -16 3256 3214 239 347 53 0 chr3 2809051 2809126 -215228032 + L2 LINE L2 3134 3212 -60 2317 61 10 13 chr3 2809140 2809479 -215227679 - AluY SINE Alu 0 338 1 2388 56 0 3 chr3 2809585 2809887 -215227271 + AluY SINE Alu 1 301 -10 192 162 108 0 chr3 2810136 2810173 -215226985 + L2 LINE L2 3198 3238 -75 199 260 0 65 chr3 2811325 2811402 -215225756 + MIR SINE MIR 108 179 -83 1296 223 86 45 chr3 2812324 2812768 -215224390 + MLT1C LTR MaLR 6 467 0 466 282 75 21 chr3 2812796 2812984 -215224174 + MIR SINE MIR 49 246 -16 188 382 6 77 chr3 2813830 2814000 -215223158 - MIR3 SINE MIR -11 197 40 700 34 0 0 chr3 2814395 2814483 -215222675 + L1PA3 LINE L1 6067 6154 -1 208 340 92 13 chr3 2817357 2817510 -215219648 + L2 LINE L2 2740 2904 -410 350 282 53 23 chr3 2817792 2817923 -215219235 + MIR SINE MIR 107 241 -21 2737 109 17 45 chr3 2817946 2818412 -215218746 + LTR46 LTR ERV1 1 453 -7 21 0 0 0 chr3 2818412 2818433 -215218725 + AT_rich Low_complexity Low_complexity 1 21 0 2481 167 24 17 chr3 2818484 2818945 -215218213 + MLT1C LTR MaLR 4 467 0 256 350 131 0 chr3 2818945 2819082 -215218076 + MIR SINE MIR 14 168 -94 221 292 246 8 chr3 2819184 2819314 -215217844 - MIR SINE MIR -87 175 15 252 330 9 9 chr3 2819332 2819438 -215217720 + MIR SINE MIR 153 258 -4 290 88 0 5 chr3 2820222 2820275 -215216883 + L1MB7 LINE L1 6130 6178 0 419 315 66 39 chr3 2820531 2820817 -215216341 + L1ME1 LINE L1 4940 5233 -913 274 303 11 22 chr3 2820841 2820930 -215216228 - L2 LINE L2 -36 3277 3190 921 233 75 58 chr3 2820989 2821469 -215215689 + L1ME1 LINE L1 5301 5788 -2020 1405 232 85 0 chr3 2821471 2821811 -215215347 + Cheshire DNA MER1_type 1 369 -2051 1719 177 3 20 chr3 2821997 2822296 -215214862 - AluJb SINE Alu -18 294 1 239 119 0 0 chr3 2823285 2823324 -215213834 + Alu SINE Alu 2 36 -267 1282 127 0 0 chr3 2823324 2823527 -215213631 + AluSg/x SINE Alu 120 312 0 796 196 98 12 chr3 2824129 2824302 -215212856 - MER5A DNA MER1_type -1 188 1 366 284 155 14 chr3 2824845 2824993 -215212165 - MER5B DNA MER1_type -3 175 7 316 216 119 8 chr3 2825011 2825145 -215212013 - MER5C DNA MER1_type -3 321 173 348 256 161 60 chr3 2825151 2825319 -215211839 + L1ME LINE L1 20 204 -5866 353 275 0 18 chr3 2825467 2825576 -215211582 + L1ME1 LINE L1 6055 6161 -5 27 0 0 0 chr3 2825921 2825948 -215211210 + AT_rich Low_complexity Low_complexity 1 27 0 520 289 7 0 chr3 2825950 2826099 -215211059 - MER5C DNA MER1_type -168 156 7 262 313 83 35 chr3 2826257 2826401 -215210757 + L2 LINE L2 3119 3269 -3 603 235 176 6 chr3 2827344 2827514 -215209644 + MIR SINE MIR 58 256 -6 736 243 86 19 chr3 2829747 2829957 -215207201 + MIR SINE MIR 39 262 0 246 287 122 26 chr3 2830826 2830941 -215206217 + MIR SINE MIR 117 242 -20 1236 227 18 21 chr3 2830981 2831267 -215205891 - MER58B DNA MER1_type -9 332 48 854 140 0 35 chr3 2831676 2831819 -215205339 + FRAM SINE Alu 38 175 -1 551 192 30 0 chr3 2832098 2832197 -215204961 + Tigger3(Golem) DNA MER2_type 2 103 -2926 3883 137 82 0 chr3 2832205 2832242 -215204916 + Tigger3(Golem) DNA MER2_type 2285 2318 -710 405 0 0 0 chr3 2832242 2832287 -215204871 + (TG)n Simple_repeat Simple_repeat 2 46 0 3883 137 82 0 chr3 2832287 2832936 -215204222 + Tigger3(Golem) DNA MER2_type 2318 3027 -1 322 338 25 25 chr3 2832968 2833125 -215204033 + MIR SINE MIR 12 168 -94 470 344 14 19 chr3 2833886 2834101 -215203057 + MIR SINE MIR 46 259 -3 2236 88 10 3 chr3 2834160 2834454 -215202704 - AluSc SINE Alu -13 296 1 297 173 39 0 chr3 2836361 2836413 -215200745 - L2 LINE L2 0 3272 3219 2095 202 52 2 chr3 2836624 2837030 -215200128 - MSTB LTR MaLR 0 426 1 291 288 0 12 chr3 2837527 2837607 -215199551 - L2 LINE L2 -4 3309 3231 * 435 294 183 11 chr3 2837606 2837786 -215199372 + MIR SINE MIR 26 236 -26 1029 122 6 0 chr3 2838953 2839109 -215198049 - L1PA10 LINE L1 -6 6162 6006 268 290 121 16 chr3 2839150 2839274 -215197884 + Charlie8 DNA MER1_type 131 267 -2150 2474 83 0 0 chr3 2839386 2839688 -215197470 + AluSq SINE Alu 1 302 -11 183 80 0 0 chr3 2839746 2839771 -215197387 + (TA)n Simple_repeat Simple_repeat 2 26 0 517 322 102 82 chr3 2839976 2841099 -215196059 + L2 LINE L2 2113 3272 0 2576 157 38 14 chr3 2841477 2841974 -215195184 - L1PA16 LINE L1 -4 6162 5654 406 368 41 59 chr3 2842051 2842543 -215194615 + L3 LINE CR1 766 1248 -329 191 306 134 15 chr3 2842919 2843053 -215194105 + L3 LINE CR1 1401 1550 -27 426 247 111 82 chr3 2843261 2843504 -215193654 + MIR SINE MIR 4 253 -9 240 389 20 20 chr3 2845213 2845362 -215191796 - L3 LINE CR1 -92 1485 1337 283 367 69 9 chr3 2845414 2845632 -215191526 - MIR SINE MIR -1 261 31 282 56 0 0 chr3 2846205 2846241 -215190917 + (TC)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr3 2846805 2846828 -215190330 + AT_rich Low_complexity Low_complexity 1 23 0 2177 95 64 14 chr3 2847056 2847413 -215189745 - THE1C LTR MaLR 0 375 1 205 308 15 0 chr3 2849460 2849525 -215187633 - L2 LINE L2 0 3313 3248 508 255 21 28 chr3 2851560 2851705 -215185453 - MIR SINE MIR -1 261 118 25 31 0 0 chr3 2852012 2852044 -215185114 + AT_rich Low_complexity Low_complexity 1 32 0 367 229 28 18 chr3 2852174 2852283 -215184875 + MER81 DNA DNA 4 113 -1 201 363 20 29 chr3 2852285 2852387 -215184771 + L2 LINE L2 3172 3272 0 429 319 63 95 chr3 2852439 2852602 -215184556 - L2 LINE L2 -341 2973 2806 2307 125 11 6 chr3 2852602 2852955 -215184203 - THE1A LTR MaLR 0 355 1 429 319 63 95 chr3 2852955 2853494 -215183664 - L2 LINE L2 -508 2806 2294 331 252 22 50 chr3 2853575 2853714 -215183444 - L1ME4a LINE L1 0 6121 5987 523 208 104 27 chr3 2853759 2853942 -215183216 + MIR SINE MIR 65 261 -1 370 239 92 0 chr3 2855451 2855581 -215181577 + MLT1K LTR MaLR 381 522 -66 290 235 0 108 chr3 2856587 2856632 -215180526 - MIR SINE MIR -70 192 162 1620 185 56 3 chr3 2856632 2856956 -215180202 - MER2 DNA MER2_type -2 342 2 290 235 0 108 chr3 2856956 2857012 -215180146 - MIR SINE MIR -100 162 102 1966 112 13 49 chr3 2857126 2857430 -215179728 - AluSx SINE Alu -16 296 4 245 286 0 0 chr3 2857762 2857818 -215179340 + MIR SINE MIR 88 143 -65 3382 176 16 3 chr3 2858170 2858807 -215178351 - L1MB1 LINE L1 -1 6167 5523 3911 185 30 19 chr3 2858830 2859363 -215177795 - L1MB4 LINE L1 -37 6143 5596 1691 182 16 0 chr3 2859363 2859670 -215177488 - AluJb SINE Alu 0 312 1 3911 185 30 19 chr3 2859670 2859959 -215177199 - L1MB4 LINE L1 -584 5596 5312 * 5814 142 45 27 chr3 2859949 2862101 -215175057 - L1MA4A LINE L1 -5 7000 4804 10287 199 47 15 chr3 2862126 2865254 -215171904 - L1MA4A LINE L1 -3411 3437 2 1375 246 73 45 chr3 2865254 2865827 -215171331 - L1MB4 LINE L1 -814 5332 4744 390 253 20 33 chr3 2867304 2867454 -215169704 + L1ME1 LINE L1 5996 6143 -23 274 309 125 13 chr3 2867507 2867659 -215169499 + MLT1K LTR MaLR 412 580 -8 482 316 158 0 chr3 2868878 2869087 -215168071 + MIR SINE MIR 11 252 -10 230 154 0 0 chr3 2869054 2869093 -215168065 + L2 LINE L2 3224 3262 -10 * 1654 138 0 0 chr3 2869889 2870120 -215167038 + AluJb SINE Alu 73 303 -9 15469 34 1 0 chr3 2871635 2874270 -215162888 - L1PA3 LINE L1 0 6155 3519 26 50 0 0 chr3 2876494 2876534 -215160624 + AT_rich Low_complexity Low_complexity 1 40 0 471 261 70 23 chr3 2877002 2877265 -215159893 - L1M2 LINE L1 -658 5508 5266 581 274 62 6 chr3 2877269 2877448 -215159710 + MIR SINE MIR 65 253 -9 382 296 21 38 chr3 2877745 2877931 -215159227 - L1M4 LINE L1 -1185 4961 4779 282 261 164 42 chr3 2879152 2879405 -215157753 + L1M4 LINE L1 3927 4148 -1998 189 0 0 0 chr3 2879405 2879426 -215157732 + (TTA)n Simple_repeat Simple_repeat 1 21 0 282 261 164 42 chr3 2879426 2879698 -215157460 + L1M4 LINE L1 4148 4516 -1630 1233 211 53 12 chr3 2880437 2880760 -215156398 - LTR52 LTR ERVL 0 421 86 553 177 9 18 chr3 2880790 2880903 -215156255 - LTR52 LTR ERVL -304 117 6 415 259 122 14 chr3 2881120 2881267 -215155891 + MIR SINE MIR 88 250 -12 309 228 13 0 chr3 2881361 2881440 -215155718 + L1M4 LINE L1 4531 4610 -1536 524 221 21 0 chr3 2881629 2881769 -215155389 + Charlie4 DNA MER1_type 1810 1952 -9 456 224 177 47 chr3 2881821 2882075 -215155083 - MLT1E LTR MaLR -3 590 304 284 126 13 82 chr3 2882146 2882305 -215154853 + (TA)n Simple_repeat Simple_repeat 2 149 0 643 257 87 10 chr3 2882338 2882638 -215154520 - L1ME LINE L1 -554 5610 5288 215 271 14 29 chr3 2882803 2882873 -215154285 - L2 LINE L2 -322 2991 2923 2862 313 96 32 chr3 2883141 2884923 -215152235 - L2 LINE L2 0 3313 1414 206 267 0 80 chr3 2886279 2886354 -215150804 + MIR SINE MIR 78 146 -116 37 69 0 0 chr3 2886360 2886432 -215150726 + AT_rich Low_complexity Low_complexity 1 72 0 2332 100 3 0 chr3 2887155 2887454 -215149704 + AluSg SINE Alu 1 300 -10 266 330 18 28 chr3 2888027 2888245 -215148913 - L1ME LINE L1 -546 5575 5360 1452 108 5 0 chr3 2888659 2888871 -215148287 - L1PB1 LINE L1 -10 6141 5929 213 98 12 98 chr3 2889322 2889404 -215147754 + (TCTCCC)n Simple_repeat Simple_repeat 2 76 0 438 316 29 37 chr3 2889834 2890027 -215147131 - MIR SINE MIR -63 145 3 2118 174 42 3 chr3 2892371 2892755 -215144403 + MER47B DNA MER2_type 20 418 0 1682 144 97 0 chr3 2893584 2893862 -215143296 - AluSx SINE Alu -7 305 1 407 301 30 54 chr3 2894235 2894438 -215142720 + MIR3 SINE MIR 8 205 -3 527 251 163 38 chr3 2894810 2895049 -215142109 + L2 LINE L2 2863 3131 -182 234 150 0 0 chr3 2895053 2895093 -215142065 + (CA)n Simple_repeat Simple_repeat 2 41 0 283 304 7 15 chr3 2895101 2895236 -215141922 + (TA)n Simple_repeat Simple_repeat 1 134 0 434 317 12 30 chr3 2895262 2895429 -215141729 + L2 LINE L2 3147 3310 -3 2581 39 0 0 chr3 2895886 2896191 -215140967 - AluYa5 SINE Alu -6 305 1 363 23 0 0 chr3 2896670 2896714 -215140444 + (CA)n Simple_repeat Simple_repeat 2 45 0 352 266 45 52 chr3 2896775 2896929 -215140229 - MLT1J2 LTR MaLR -23 427 275 2197 108 0 3 chr3 2896955 2897250 -215139908 + AluSc SINE Alu 16 309 0 1789 239 21 23 chr3 2897961 2898479 -215138679 - L1MEc LINE L1 -5853 543 27 313 204 9 102 chr3 2899790 2899807 -215137351 + MLT1K LTR MaLR 202 219 -369 2559 104 64 7 chr3 2899807 2900212 -215136946 + MSTA LTR MaLR 1 428 0 313 204 9 102 chr3 2900212 2900302 -215136856 + MLT1K LTR MaLR 219 299 -289 22 0 0 0 chr3 2900596 2900618 -215136540 + AT_rich Low_complexity Low_complexity 1 22 0 283 157 43 43 chr3 2901247 2901317 -215135841 - L1ME4a LINE L1 -74 6047 5978 312 330 102 19 chr3 2902073 2902288 -215134870 + L1ME LINE L1 5152 5384 -762 311 297 37 67 chr3 2902551 2902887 -215134271 + L1ME LINE L1 5507 5825 -296 1958 158 0 3 chr3 2903024 2903321 -215133837 + AluJb SINE Alu 1 296 -16 851 266 60 43 chr3 2904327 2904695 -215132463 - MLT1K LTR MaLR -6 582 209 249 341 0 12 chr3 2904972 2905057 -215132101 - L2 LINE L2 -224 3048 2965 287 290 80 12 chr3 2905190 2905352 -215131806 + L1MD2 LINE L1 5606 5778 -343 222 311 57 77 chr3 2905808 2906056 -215131102 - L2 LINE L2 -194 3078 2836 184 410 43 0 chr3 2906241 2906358 -215130800 + MIR3 SINE MIR 84 205 -3 2076 138 0 0 chr3 2906827 2907125 -215130033 - AluSx SINE Alu -14 298 1 741 250 74 57 chr3 2908807 2909159 -215127999 + L1MD2 LINE L1 5937 6294 -65 269 330 43 0 chr3 2909730 2909845 -215127313 + L2 LINE L2 3194 3313 0 220 345 60 0 chr3 2910652 2910768 -215126390 + L2 LINE L2 2794 2916 -398 597 203 39 0 chr3 2910805 2910958 -215126200 - L1MB7 LINE L1 -16 6168 6010 556 187 174 0 chr3 2910959 2911114 -215126044 - L1MB7 LINE L1 -354 5830 5649 25 0 0 0 chr3 2911927 2911952 -215125206 + AT_rich Low_complexity Low_complexity 1 25 0 1907 151 20 7 chr3 2911961 2912260 -215124898 + AluJb SINE Alu 2 304 -8 213 271 17 0 chr3 2912326 2912385 -215124773 + (TG)n Simple_repeat Simple_repeat 2 61 0 4311 180 42 13 chr3 2912646 2912855 -215124303 - L1MB3 LINE L1 -8 6175 5974 1737 157 52 0 chr3 2912855 2913141 -215124017 - AluJb SINE Alu -10 302 2 4311 180 42 13 chr3 2913141 2913885 -215123273 - L1MB3 LINE L1 -209 5974 5188 250 264 11 66 chr3 2913985 2914076 -215123082 - L2 LINE L2 -1 3312 3227 252 385 24 12 chr3 2914133 2914299 -215122859 - MIR SINE MIR -84 178 11 1366 233 41 41 chr3 2915010 2915400 -215121758 + MLT1B LTR MaLR 1 390 0 300 117 50 0 chr3 2915675 2915735 -215121423 - L1MB8 LINE L1 -1 6177 6115 1498 163 14 3 chr3 2915874 2916156 -215121002 - L1MB7 LINE L1 -91 6093 5809 1593 223 119 10 chr3 2916156 2916636 -215120522 - MER34 LTR ERV1 0 542 11 1089 170 21 30 chr3 2916644 2916879 -215120279 - L1MB7 LINE L1 -365 5819 5587 539 208 60 140 chr3 2916954 2917219 -215119939 + L2 LINE L2 3055 3298 -15 447 336 61 42 chr3 2917518 2917943 -215119215 - MLT1K LTR MaLR -2 586 154 288 304 6 17 chr3 2920711 2920848 -215116310 + CT-rich Low_complexity Low_complexity 1 135 0 423 304 33 72 chr3 2921521 2921797 -215115361 + MER102b DNA MER1_type 43 307 -34 180 333 21 0 chr3 2921900 2921948 -215115210 + L2 LINE L2 3139 3187 -85 230 325 12 0 chr3 2922485 2922568 -215114590 - MIR3 SINE MIR -7 201 118 463 250 38 12 chr3 2922578 2922738 -215114420 + LTR16B LTR ERVL 16 179 -285 674 263 6 0 chr3 2922791 2922970 -215114188 + LTR16B LTR ERVL 285 464 0 338 293 22 50 chr3 2922982 2923163 -215113995 - L2 LINE L2 -240 3032 2857 305 316 0 35 chr3 2923186 2923300 -215113858 - MIR3 SINE MIR -97 111 2 200 313 45 15 chr3 2923504 2923571 -215113587 + MIR SINE MIR 8 76 -186 470 300 123 43 chr3 2923575 2924119 -215113039 - L2 LINE L2 -243 3029 2448 185 270 45 11 chr3 2924647 2924736 -215112422 - L2 LINE L2 -104 3209 3118 1820 158 0 39 chr3 2925132 2925442 -215111716 - AluJb SINE Alu -14 298 1 229 293 98 12 chr3 2925547 2925629 -215111529 + L2 LINE L2 3143 3231 -41 335 264 14 0 chr3 2925809 2925881 -215111277 - L2 LINE L2 -2 3270 3198 528 231 67 0 chr3 2925974 2926108 -215111050 + Tigger6 DNA MER2_type 2 144 -1453 2348 100 0 13 chr3 2926135 2926429 -215110729 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr3 2926429 2926450 -215110708 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 2348 100 0 13 chr3 2926450 2926466 -215110692 + AluSx SINE Alu 292 307 -5 348 196 155 0 chr3 2926466 2926563 -215110595 + Tigger6 DNA MER2_type 1486 1597 0 2288 249 54 32 chr3 2926586 2927429 -215109729 - L1ME3A LINE L1 -5 6165 5299 4874 121 7 5 chr3 2927429 2928173 -215108985 + L1PA13 LINE L1 5408 6152 -11 2288 249 54 32 chr3 2928173 2928188 -215108970 - L1ME3A LINE L1 -871 5299 5286 229 283 62 7 chr3 2928182 2928327 -215108831 - L1M4 LINE L1 -748 5467 5315 * 1245 282 88 49 chr3 2928408 2928698 -215108460 - L1MEc LINE L1 -3180 3035 2758 186 43 0 0 chr3 2928698 2928721 -215108437 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1245 282 88 49 chr3 2928721 2928732 -215108426 - L1MEc LINE L1 -3457 2758 2749 1963 142 28 0 chr3 2928732 2929014 -215108144 + AluSx SINE Alu 1 290 -22 1245 282 88 49 chr3 2929014 2929598 -215107560 - L1MEc LINE L1 -3466 2749 2189 21 36 0 0 chr3 2929598 2929626 -215107532 + AT_rich Low_complexity Low_complexity 1 28 0 1245 282 88 49 chr3 2929626 2930650 -215106508 - L1MEc LINE L1 -4026 2189 1056 2140 109 10 0 chr3 2930650 2930943 -215106215 - AluSx SINE Alu -16 296 1 1245 282 88 49 chr3 2930943 2931029 -215106129 - L1MEc LINE L1 -5159 1056 975 519 308 52 69 chr3 2931697 2932045 -215105113 + MLT1H1-int LTR MaLR 1030 1371 0 1221 276 50 50 chr3 2932064 2932589 -215104569 + MLT1H1 LTR MaLR 25 549 -6 208 245 20 20 chr3 2932594 2932643 -215104515 + MER5A DNA MER1_type 110 158 -31 345 277 121 40 chr3 2934554 2934702 -215102456 + MIR3 SINE MIR 7 165 -43 3087 170 5 9 chr3 2934931 2935621 -215101537 - L1MA5 LINE L1 -440 5860 5174 1654 177 17 9 chr3 2935621 2935959 -215101199 + L1MA5 LINE L1 5943 6295 -5 320 340 20 0 chr3 2936270 2936370 -215100788 + L2 LINE L2 3171 3272 -41 3168 121 20 69 chr3 2936793 2937347 -215099811 - MER1A DNA MER1_type 0 527 1 230 253 96 0 chr3 2937449 2937532 -215099626 - L1ME LINE L1 -469 5652 5562 6415 159 12 8 chr3 2937625 2939768 -215097390 - L1PB1 LINE L1 -2 6865 4719 4385 228 18 5 chr3 2939775 2940293 -215096865 - L1PB1 LINE L1 -2460 4402 3892 216 0 0 0 chr3 2940293 2940317 -215096841 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 4385 228 18 5 chr3 2940317 2940909 -215096249 - L1PB1 LINE L1 -2970 3892 3278 * 29396 108 48 44 chr3 2940889 2947007 -215090151 - L1PA7 LINE L1 0 6154 12 2208 165 18 12 chr3 2947018 2947512 -215089646 - L1PB1 LINE L1 -3553 3309 2803 8353 114 60 15 chr3 2947522 2949886 -215087272 - L1PB1 LINE L1 -4249 2614 1 460 352 73 40 chr3 2949992 2950319 -215086839 - L1MEd LINE L1 -5324 795 458 300 318 74 7 chr3 2950937 2951085 -215086073 - L1M LINE L1 -2566 5429 5272 463 198 69 0 chr3 2951088 2951189 -215085969 - L1MA9 LINE L1 -38 6274 6167 * 1110 172 0 22 chr3 2951188 2951415 -215085743 - L1 LINE L1 -814 5332 5111 2322 251 53 27 chr3 2951426 2952797 -215084361 - L1 LINE L1 -3322 4243 2831 6520 267 88 29 chr3 2952812 2954963 -215082195 + L1PA13 LINE L1 2 2278 -4509 369 237 11 0 chr3 2954989 2955082 -215082076 + L1PA15 LINE L1 1565 1658 -5129 257 231 0 0 chr3 2955097 2955149 -215082009 - L1PA15-16 LINE L1 -4433 2416 2365 15449 200 14 16 chr3 2955186 2956338 -215080820 + L1PA15 LINE L1 2315 3468 -3348 1612 128 4 4 chr3 2956338 2956572 -215080586 + AluSc SINE Alu 44 277 -32 198 0 0 0 chr3 2956573 2956595 -215080563 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 15449 200 14 16 chr3 2956595 2959951 -215077207 + L1PA15 LINE L1 3467 6815 -1 1769 225 52 85 chr3 2959995 2960863 -215076295 - L1M2 LINE L1 -4411 2757 1915 231 270 90 10 chr3 2961382 2961482 -215075676 - L1M2 LINE L1 -5378 1790 1683 637 324 51 19 chr3 2961751 2962066 -215075092 - L1M2 LINE L1 -5806 1292 968 3424 283 97 45 chr3 2962228 2964171 -215072987 - L2 LINE L2 0 3313 1276 2199 106 3 0 chr3 2964583 2964876 -215072282 - AluSg SINE Alu -16 294 1 2687 108 10 0 chr3 2965407 2965807 -215071351 + L1PA14 LINE L1 5757 6160 -1 480 310 28 5 chr3 2966345 2966561 -215070597 - L1M4 LINE L1 -2196 3950 3730 24 0 0 0 chr3 2967166 2967190 -215069968 + AT_rich Low_complexity Low_complexity 1 24 0 414 343 164 21 chr3 2969150 2969523 -215067635 - L2 LINE L2 -2 3270 2845 184 246 33 16 chr3 2969549 2969610 -215067548 - L2 LINE L2 -1034 2280 2219 231 188 0 0 chr3 2969662 2969710 -215067448 + (CA)n Simple_repeat Simple_repeat 1 48 0 2482 46 3 0 chr3 2969723 2970027 -215067131 - AluY SINE Alu -6 305 1 348 157 22 101 chr3 2972194 2972283 -215064875 - L1ME3A LINE L1 -12 6158 6077 1111 282 92 5 chr3 2972387 2972788 -215064370 - L1ME3A LINE L1 0 6170 5735 1769 109 12 12 chr3 2973197 2973453 -215063705 - AluSg SINE Alu -18 292 37 2334 98 41 120 chr3 2975142 2975602 -215061556 + MSTC LTR MaLR 5 428 0 251 281 0 0 chr3 2976043 2976107 -215061051 - MIR SINE MIR -115 147 84 540 226 0 0 chr3 2976117 2976223 -215060935 + L2 LINE L2 3189 3294 -19 294 297 39 42 chr3 2977151 2977321 -215059837 + MIR SINE MIR 21 185 -69 417 268 149 30 chr3 2977604 2977772 -215059386 - MIR SINE MIR -50 212 25 335 270 130 55 chr3 2977827 2978027 -215059131 - L1ME3A LINE L1 0 6153 5939 268 204 62 97 chr3 2978067 2978180 -215058978 - L1ME3A LINE L1 -208 5945 5837 1297 236 70 90 chr3 2978186 2978971 -215058187 - L1ME3A LINE L1 -922 5207 4439 527 287 129 30 chr3 2979201 2980112 -215057046 - L1MEd LINE L1 -4671 1639 593 273 246 42 34 chr3 2980867 2980985 -215056173 - MLT1K LTR MaLR -95 493 375 502 54 27 0 chr3 2982812 2982886 -215054272 + (TAGA)n Simple_repeat Simple_repeat 3 78 0 350 228 232 0 chr3 2983300 2983407 -215053751 - MER5A DNA MER1_type 0 178 60 574 55 104 0 chr3 2983407 2983570 -215053588 + (TA)n Simple_repeat Simple_repeat 1 180 0 430 49 110 18 chr3 2983581 2983745 -215053413 + (TA)n Simple_repeat Simple_repeat 2 180 0 354 173 74 0 chr3 2983770 2983932 -215053226 + (TA)n Simple_repeat Simple_repeat 1 174 0 585 152 53 0 chr3 2983946 2984117 -215053041 + (TA)n Simple_repeat Simple_repeat 1 180 0 2660 87 5 0 chr3 2984121 2984489 -215052669 + L1PB1 LINE L1 5782 6151 0 21 36 0 0 chr3 2984489 2984517 -215052641 + AT_rich Low_complexity Low_complexity 1 28 0 312 274 11 11 chr3 2984524 2984619 -215052539 - L2 LINE L2 -225 3088 2994 337 248 187 11 chr3 2984842 2985092 -215052066 + L1MC4a LINE L1 5602 5899 -224 210 326 167 0 chr3 2985099 2985320 -215051838 - L2 LINE L2 -1616 1698 1441 263 274 43 26 chr3 2985504 2985621 -215051537 + MIR SINE MIR 85 203 -59 259 243 57 86 chr3 2985676 2985816 -215051342 + MIR SINE MIR 124 259 -3 213 261 29 14 chr3 2985984 2986053 -215051105 - L3 LINE CR1 -5 1572 1503 332 264 35 0 chr3 2986581 2986668 -215050490 - MIR SINE MIR -7 255 166 195 129 0 0 chr3 2986687 2986718 -215050440 + (TG)n Simple_repeat Simple_repeat 2 32 0 302 294 18 9 chr3 2986780 2986889 -215050269 + MIR3 SINE MIR 97 206 -2 345 47 0 0 chr3 2986978 2987021 -215050137 + (CA)n Simple_repeat Simple_repeat 2 44 0 1487 238 3 3 chr3 2987051 2987333 -215049825 - AluJo SINE Alu -27 285 4 48 53 0 0 chr3 2988191 2988267 -215048891 + AT_rich Low_complexity Low_complexity 1 76 0 204 297 16 31 chr3 2989162 2989226 -215047932 + MIR SINE MIR 33 95 -113 709 289 24 45 chr3 2989258 2989504 -215047654 - MIR SINE MIR -7 255 15 258 350 36 7 chr3 2991417 2991555 -215045603 + MIR SINE MIR 21 165 -65 297 135 0 0 chr3 2991608 2991660 -215045498 + (TC)n Simple_repeat Simple_repeat 1 52 0 464 250 0 9 chr3 2992186 2992294 -215044864 + MLT1F LTR MaLR 88 194 -348 415 287 61 24 chr3 2993514 2993678 -215043480 - MIR SINE MIR -9 253 84 362 250 73 62 chr3 2994280 2994472 -215042686 - MIR SINE MIR -55 207 14 207 254 45 0 chr3 2995339 2995406 -215041752 - MIR SINE MIR -11 251 182 27 0 0 0 chr3 2995593 2995620 -215041538 + AT_rich Low_complexity Low_complexity 1 27 0 1444 246 73 39 chr3 2996123 2996660 -215040498 - MLT1K LTR MaLR -6 582 28 465 19 0 0 chr3 2997574 2997628 -215039530 + (TG)n Simple_repeat Simple_repeat 1 54 0 423 275 35 69 chr3 2998149 2998327 -215038831 - MIR SINE MIR -50 158 20 2049 178 8 11 chr3 2998839 2999205 -215037953 - MLT1A1 LTR MaLR 0 365 1 6061 196 88 83 chr3 2999205 3000510 -215036648 - MLT1A1-int LTR MaLR 0 1735 417 1453 206 16 23 chr3 3000510 3000816 -215036342 + AluJo SINE Alu 1 304 -8 6061 196 88 83 chr3 3000816 3001236 -215035922 - MLT1A1-int LTR MaLR -1318 417 1 1627 189 13 0 chr3 3001236 3001542 -215035616 - MLT1A1 LTR MaLR 0 365 56 654 152 0 118 chr3 3001537 3001715 -215035443 - MLT1E2 LTR MaLR -469 157 1 * 875 293 57 6 chr3 3001716 3002047 -215035111 - L2 LINE L2 -1099 2215 1868 250 286 60 8 chr3 3002170 3002244 -215034914 + L2 LINE L2 1739 1808 -1506 2592 52 0 0 chr3 3002244 3002550 -215034608 - AluY SINE Alu -5 306 1 250 286 60 8 chr3 3002550 3002608 -215034550 + L2 LINE L2 1808 1878 -1436 1779 200 113 20 chr3 3003564 3003728 -215033430 + L1MD3 LINE L1 4958 5105 -1041 297 0 0 0 chr3 3003728 3003761 -215033397 + (TG)n Simple_repeat Simple_repeat 2 34 0 1779 200 113 20 chr3 3003761 3004328 -215032830 + L1MD3 LINE L1 5105 5326 -820 1581 161 51 46 chr3 3004328 3004701 -215032457 - THE1C LTR MaLR 0 375 1 1779 200 113 20 chr3 3004701 3004788 -215032370 + L1MD3 LINE L1 5326 5403 -743 1090 189 43 13 chr3 3004782 3005015 -215032143 + L1ME1 LINE L1 5923 6162 -4 * 288 185 19 56 chr3 3005217 3005325 -215031833 + Charlie8 DNA MER1_type 67 170 -2247 1696 188 0 7 chr3 3005907 3006199 -215030959 + AluJo SINE Alu 1 290 -22 1889 185 33 31 chr3 3006689 3007245 -215029913 - MLT2A2 LTR ERVL 0 554 1 252 59 0 0 chr3 3007299 3007333 -215029825 + (TG)n Simple_repeat Simple_repeat 2 35 0 729 157 9 0 chr3 3009249 3009364 -215027794 + FLAM_C SINE Alu 3 118 -15 202 288 61 15 chr3 3009466 3009532 -215027626 + MIR3 SINE MIR 115 183 -25 1345 315 58 57 chr3 3009724 3010831 -215026327 - L2 LINE L2 -1 3312 2201 307 105 18 0 chr3 3010938 3010995 -215026163 - L1MB2 LINE L1 0 6171 6114 756 174 7 0 chr3 3011066 3011215 -215025943 - L1MB3 LINE L1 0 6183 6034 1788 166 12 0 chr3 3011258 3011584 -215025574 - L1MB2 LINE L1 -131 6040 5711 2281 121 0 7 chr3 3014149 3014455 -215022703 + AluSx SINE Alu 2 305 -7 1796 257 41 58 chr3 3014574 3014924 -215022234 + L1ME3A LINE L1 5175 5530 -640 1849 141 37 3 chr3 3014924 3015251 -215021907 + MER44D DNA MER2_type 1 608 -1 1796 257 41 58 chr3 3015251 3015502 -215021656 + L1ME3A LINE L1 5530 5784 -386 189 94 0 0 chr3 3015502 3015534 -215021624 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr3 3015540 3015564 -215021594 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2002 121 0 7 chr3 3015566 3015846 -215021312 - AluSq SINE Alu -35 278 1 1796 257 41 58 chr3 3015846 3016137 -215021021 + L1ME3A LINE L1 5790 6060 -110 844 196 22 27 chr3 3016933 3017117 -215020041 + MER5A DNA MER1_type 2 184 -5 357 279 35 87 chr3 3017288 3017414 -215019744 - MER5B DNA MER1_type -12 166 50 1706 208 19 6 chr3 3017414 3017774 -215019384 - MLT1A1 LTR MaLR 0 365 1 357 279 35 87 chr3 3017774 3017819 -215019339 - MER5B DNA MER1_type -128 50 4 249 299 149 65 chr3 3018121 3018322 -215018836 + MIR SINE MIR 28 245 -17 250 281 26 61 chr3 3018378 3018492 -215018666 + MIR SINE MIR 31 140 -122 1652 173 141 3 chr3 3018635 3019011 -215018147 - MSTA LTR MaLR 0 428 1 193 274 55 14 chr3 3020140 3020213 -215016945 - L3 LINE CR1 -35 1542 1467 233 274 60 24 chr3 3020627 3020711 -215016447 - L3 LINE CR1 -133 1444 1358 693 293 18 26 chr3 3020735 3020964 -215016194 + MIR SINE MIR 7 233 -29 227 381 44 17 chr3 3021006 3021187 -215015971 - L3 LINE CR1 -238 1339 1154 2599 66 43 3 chr3 3021780 3022130 -215015028 + THE1B LTR MaLR 1 364 0 292 307 88 0 chr3 3022348 3022485 -215014673 - L3 LINE CR1 -713 864 716 21 0 0 0 chr3 3023107 3023128 -215014030 + AT_rich Low_complexity Low_complexity 1 21 0 207 322 0 46 chr3 3023697 3023784 -215013374 - MIR SINE MIR -50 212 130 726 184 87 66 chr3 3024228 3024424 -215012734 + MER63A DNA MER1_type 9 208 -2 847 294 38 55 chr3 3024439 3024786 -215012372 + L2 LINE L2 2289 2629 -685 216 0 0 0 chr3 3024831 3024855 -215012303 + (A)n Simple_repeat Simple_repeat 1 24 0 738 291 121 28 chr3 3024856 3025220 -215011938 - MLT1J2 LTR MaLR -38 412 15 1097 249 23 101 chr3 3025235 3026003 -215011155 + L2 LINE L2 2624 3313 0 395 293 94 17 chr3 3026147 3026232 -215010926 - MIR SINE MIR -38 224 147 1674 167 0 61 chr3 3026232 3026383 -215010775 + AluJb SINE Alu 1 125 -187 2188 99 0 0 chr3 3026383 3026655 -215010503 + AluSx SINE Alu 24 295 -17 1674 167 0 61 chr3 3026655 3026814 -215010344 + AluJb SINE Alu 125 292 -20 395 293 94 17 chr3 3026814 3026909 -215010249 - MIR SINE MIR -115 147 30 355 281 50 41 chr3 3026989 3027110 -215010048 + MIR3 SINE MIR 70 191 -17 282 360 26 0 chr3 3027375 3027489 -215009669 + MIR SINE MIR 102 218 -44 22 56 0 0 chr3 3027875 3027911 -215009247 + AT_rich Low_complexity Low_complexity 1 36 0 270 254 0 0 chr3 3028280 3028390 -215008768 + (TGGA)n Simple_repeat Simple_repeat 3 112 0 378 338 8 8 chr3 3028426 3028559 -215008599 + MIR3 SINE MIR 11 143 -65 2280 111 3 0 chr3 3029075 3029373 -215007785 + AluSx SINE Alu 1 299 -13 333 322 0 0 chr3 3029383 3029498 -215007660 + MIR SINE MIR 142 256 -6 1910 151 18 0 chr3 3029521 3029800 -215007358 - AluSx SINE Alu -10 302 19 1704 212 51 22 chr3 3029805 3030253 -215006905 - MLT1C LTR MaLR -1 466 6 275 246 282 0 chr3 3031445 3031555 -215005603 - MER5A DNA MER1_type 0 189 49 1754 206 80 49 chr3 3031639 3032128 -215005030 - MLT1D LTR MaLR 0 505 2 208 200 22 0 chr3 3032611 3032656 -215004502 + (TTTA)n Simple_repeat Simple_repeat 1 46 0 246 174 43 33 chr3 3033831 3033923 -215003235 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 218 277 0 0 chr3 3033923 3033970 -215003188 - L2 LINE L2 -13 3300 3254 * 410 279 202 6 chr3 3033940 3034123 -215003035 - MIR SINE MIR -24 238 20 437 309 210 22 chr3 3034125 3034449 -215002709 - L2 LINE L2 -1 3271 2887 25 0 0 0 chr3 3034587 3034612 -215002546 + AT_rich Low_complexity Low_complexity 1 25 0 2096 131 76 15 chr3 3034764 3035107 -215002051 + THE1B LTR MaLR 1 364 0 11187 86 6 3 chr3 3035107 3036672 -215000486 + THE1B-int LTR MaLR 1 1571 -9 2066 126 82 15 chr3 3036677 3037018 -215000140 + THE1B LTR MaLR 1 364 0 1422 186 67 25 chr3 3037254 3037581 -214999577 + MER58B DNA MER1_type 1 341 0 244 239 28 42 chr3 3038784 3038855 -214998303 + MIR SINE MIR 77 146 -62 433 206 167 39 chr3 3038927 3039107 -214998051 - MER113 DNA MER1_type? -45 476 274 507 179 32 0 chr3 3039160 3039283 -214997875 + MER53 DNA DNA 63 189 0 325 254 51 17 chr3 3039376 3039510 -214997648 + MLT1H LTR MaLR 19 193 -244 45 19 0 0 chr3 3039775 3039827 -214997331 + AT_rich Low_complexity Low_complexity 1 52 0 199 192 19 58 chr3 3039896 3039948 -214997210 + MIR3 SINE MIR 145 194 -14 320 221 78 58 chr3 3040040 3040143 -214997015 + MIR SINE MIR 70 171 -63 782 131 0 22 chr3 3040144 3040281 -214996877 + L1MB8 LINE L1 5560 5693 -598 611 195 131 64 chr3 3041087 3041323 -214995835 + L1MB8 LINE L1 5925 6176 -2 569 312 112 33 chr3 3041346 3041766 -214995392 + L1M4 LINE L1 3310 3762 -2384 937 196 12 12 chr3 3041777 3041945 -214995213 + AluJo SINE Alu 121 288 -24 1754 169 3 14 chr3 3042419 3042740 -214994418 - AluJb SINE Alu 0 312 2 872 185 29 62 chr3 3043283 3043526 -214993632 - MER106A DNA MER1_type -1 235 1 26 30 0 0 chr3 3043715 3043748 -214993410 + AT_rich Low_complexity Low_complexity 1 33 0 323 211 0 0 chr3 3044057 3044114 -214993044 - L2 LINE L2 0 3272 3216 3248 159 67 20 chr3 3044889 3045530 -214991628 + LTR51 LTR ERV1 1 671 0 283 272 110 73 chr3 3045708 3045762 -214991396 + MIR3 SINE MIR 34 85 -123 780 239 159 44 chr3 3045762 3046126 -214991032 - MLT1I LTR MaLR -1 408 3 283 272 110 73 chr3 3046126 3046207 -214990951 + MIR3 SINE MIR 85 174 -34 1984 180 64 10 chr3 3046430 3046836 -214990322 + MSTB1 LTR MaLR 5 432 0 1056 208 5 18 chr3 3047964 3048185 -214988973 - MER20 DNA MER1_type 0 219 2 1268 171 33 12 chr3 3049370 3049610 -214987548 + MIR SINE MIR 11 255 -7 238 259 83 0 chr3 3049686 3049794 -214987364 - MER53 DNA DNA 0 189 73 205 325 98 16 chr3 3050848 3050971 -214986187 - MIR3 SINE MIR -3 205 73 762 329 76 9 chr3 3051263 3051433 -214985725 - MLT1K LTR MaLR -8 580 423 2132 122 73 14 chr3 3051433 3051787 -214985371 - THE1C LTR MaLR 0 375 1 762 329 76 9 chr3 3051787 3052066 -214985092 - MLT1K LTR MaLR -165 423 101 1732 182 0 20 chr3 3052099 3052401 -214984757 + AluJo SINE Alu 1 296 -16 600 308 195 11 chr3 3052878 3053242 -214983916 - L2 LINE L2 -2 3311 2881 577 234 105 0 chr3 3053304 3053428 -214983730 + FRAM SINE Alu 1 137 -39 542 348 42 42 chr3 3053436 3053562 -214983596 - L2 LINE L2 -537 2777 2652 978 197 16 0 chr3 3053562 3053745 -214983413 + MER5A DNA MER1_type 1 186 -3 542 348 42 42 chr3 3053745 3053931 -214983227 - L2 LINE L2 -661 2653 2465 324 267 69 15 chr3 3054043 3054174 -214982984 + MIR SINE MIR 35 172 -90 300 289 195 27 chr3 3055322 3055471 -214981687 + L3 LINE CR1 277 450 -1127 287 200 27 53 chr3 3056030 3056105 -214981053 + MER81 DNA DNA 6 78 -36 194 250 0 0 chr3 3056112 3056156 -214981002 + L3 LINE CR1 1140 1183 -394 679 286 54 17 chr3 3056200 3056441 -214980717 - MIR SINE MIR 0 262 13 260 244 154 0 chr3 3056443 3056566 -214980592 + L3 LINE CR1 1221 1362 -215 11735 207 24 17 chr3 3057908 3061817 -214975341 - L1PA16 LINE L1 -2 6164 2234 3552 110 70 24 chr3 3061970 3063048 -214974110 - MER11A LTR ERVK -4 1232 1 1258 245 28 3 chr3 3063638 3063965 -214973193 + MER58B DNA MER1_type 1 335 -6 1087 175 0 0 chr3 3064492 3064658 -214972500 - FRAM SINE Alu -10 166 1 610 261 133 11 chr3 3064774 3064933 -214972225 + MIR SINE MIR 8 195 -67 279 0 0 0 chr3 3064933 3064964 -214972194 + (TG)n Simple_repeat Simple_repeat 2 32 0 610 261 133 11 chr3 3064964 3064992 -214972166 + MIR SINE MIR 195 218 -44 398 35 0 18 chr3 3065010 3065067 -214972091 + (TA)n Simple_repeat Simple_repeat 2 57 0 203 328 0 0 chr3 3065093 3065160 -214971998 + MIR SINE MIR 196 262 0 508 258 89 72 chr3 3065283 3065708 -214971450 + MLT1H LTR MaLR 3 592 -1 1631 147 27 17 chr3 3065730 3066023 -214971135 - MSTA LTR MaLR 0 428 133 478 269 304 0 chr3 3066753 3066924 -214970234 + MIR SINE MIR 39 261 -1 353 253 111 25 chr3 3067043 3067363 -214969795 + MLT1K LTR MaLR 158 553 -35 22 0 0 0 chr3 3067485 3067507 -214969651 + AT_rich Low_complexity Low_complexity 1 22 0 364 261 17 25 chr3 3068126 3068245 -214968913 + MLT1K LTR MaLR 132 249 -339 216 0 0 0 chr3 3068257 3068281 -214968877 + (T)n Simple_repeat Simple_repeat 1 24 0 237 258 45 11 chr3 3068543 3068632 -214968526 + L1MCa LINE L1 19 110 -6316 818 266 31 35 chr3 3068653 3068943 -214968215 + L1MCa LINE L1 139 427 -5480 1030 228 47 37 chr3 3069022 3069320 -214967838 + L1MCa LINE L1 417 717 -5190 1226 90 6 0 chr3 3069350 3069528 -214967630 + (GAA)n Simple_repeat Simple_repeat 2 180 0 281 87 0 22 chr3 3069541 3069587 -214967571 + (GAAA)n Simple_repeat Simple_repeat 3 47 0 2807 215 78 18 chr3 3069589 3070697 -214966461 + L1MCa LINE L1 713 1992 -4434 986 172 0 0 chr3 3070695 3070881 -214966277 + L1MA9 LINE L1 5597 5782 -552 * 260 136 0 0 chr3 3070880 3070924 -214966234 - L1M4 LINE L1 -410 5774 5731 * 1514 226 30 37 chr3 3070978 3071469 -214965689 + L1MA9 LINE L1 5784 6271 -41 429 247 64 16 chr3 3071488 3071674 -214965484 + L1MCa LINE L1 2068 2207 -4219 * 635 171 99 13 chr3 3071667 3071819 -214965339 + L1MB3 LINE L1 6011 6175 -8 271 95 0 0 chr3 3071830 3071872 -214965286 + L1MCa LINE L1 2190 2231 -4195 1810 108 0 4 chr3 3071896 3072136 -214965022 + AluSc SINE Alu 1 239 -70 354 325 117 13 chr3 3072168 3072399 -214964759 - MIR SINE MIR 0 262 8 222 278 19 0 chr3 3072428 3072482 -214964676 - L2 LINE L2 -22 3291 3237 2328 115 7 0 chr3 3072618 3072923 -214964235 - AluSx SINE Alu -5 307 1 289 349 88 17 chr3 3074399 3074637 -214962521 + L2 LINE L2 1865 2119 -1195 736 259 70 5 chr3 3074809 3074994 -214962164 - MIR SINE MIR -37 225 29 3411 191 43 32 chr3 3075201 3075783 -214961375 + L1MB8 LINE L1 5309 5906 -272 1951 177 67 98 chr3 3075783 3076466 -214960692 - MER4A LTR ERV1 0 664 3 3411 191 43 32 chr3 3076466 3076738 -214960420 + L1MB8 LINE L1 5906 6173 -5 665 283 70 86 chr3 3077157 3077747 -214959411 - MLT1K LTR MaLR 0 588 9 968 204 75 45 chr3 3079430 3079763 -214957395 - MER2 DNA MER2_type -1 343 1 252 363 189 19 chr3 3079797 3080163 -214956995 + L2 LINE L2 2543 2970 -344 324 294 167 11 chr3 3080538 3080718 -214956440 - MLT1J1 LTR MaLR -171 275 68 222 37 0 0 chr3 3080897 3080924 -214956234 + (TA)n Simple_repeat Simple_repeat 1 27 0 2473 162 7 20 chr3 3080936 3081375 -214955783 + Tigger2a DNA MER2_type 2 434 0 192 258 45 15 chr3 3081857 3081923 -214955235 + L2 LINE L2 3245 3312 -1 2251 114 0 0 chr3 3082835 3083125 -214954033 + AluSx SINE Alu 1 290 -22 1888 102 35 0 chr3 3083536 3083791 -214953367 - AluSq SINE Alu -1 312 49 227 245 0 0 chr3 3084701 3084754 -214952404 + L2 LINE L2 3257 3309 -4 1733 166 3 19 chr3 3084876 3085189 -214951969 - AluJb SINE Alu 0 312 5 695 190 29 36 chr3 3085304 3085441 -214951717 + AluJo SINE Alu 1 136 -176 3937 210 53 38 chr3 3085444 3086547 -214950611 - L1MD1 LINE L1 -2 7805 6101 627 288 101 5 chr3 3087115 3087334 -214949824 + MIR SINE MIR 23 262 0 4269 129 29 7 chr3 3087336 3087956 -214949202 - MER41B LTR ERV1 0 635 2 384 353 0 0 chr3 3088375 3088497 -214948661 - MIR3 SINE MIR -15 193 72 329 286 30 75 chr3 3088811 3088944 -214948214 - L2 LINE L2 -203 3069 2943 368 139 241 13 chr3 3089520 3089599 -214947559 - Tigger2 DNA MER2_type -349 2369 2273 233 254 30 0 chr3 3089589 3089656 -214947502 - Tigger2 DNA MER2_type -2649 69 1 * 333 325 42 6 chr3 3090163 3090329 -214946829 - MIR3 SINE MIR -7 201 30 293 224 30 0 chr3 3090588 3090655 -214946503 + Tigger2 DNA MER2_type 1 69 -2649 * 1929 117 78 3 chr3 3090645 3090952 -214946206 + Tigger2 DNA MER2_type 2273 2602 -116 614 240 0 0 chr3 3091160 3091281 -214945877 - MER45A DNA AcHobo -1 177 57 * 630 183 0 48 chr3 3091278 3091404 -214945754 + Tigger2 DNA MER2_type 2599 2718 0 2286 94 3 0 chr3 3091996 3092294 -214944864 + AluSx SINE Alu 1 299 -13 785 209 120 0 chr3 3093873 3094031 -214943127 - MER45A DNA AcHobo 0 178 2 182 152 61 0 chr3 3094206 3094239 -214942919 - MER5B DNA MER1_type -133 45 11 225 332 158 21 chr3 3094296 3094486 -214942672 - L3 LINE CR1 -353 1224 1009 1915 164 0 3 chr3 3095554 3095853 -214941305 + AluJo SINE Alu 1 298 -14 1788 192 69 38 chr3 3097079 3097487 -214939671 + L1ME1 LINE L1 4902 5341 -825 2198 124 7 0 chr3 3097487 3097794 -214939364 + AluSx SINE Alu 1 309 -3 1788 192 69 38 chr3 3097794 3097971 -214939187 + L1ME1 LINE L1 5341 5511 -655 512 169 24 0 chr3 3097975 3098058 -214939100 + MLT1D LTR MaLR 4 88 -417 1174 151 58 92 chr3 3098101 3098435 -214938723 - AluJb SINE Alu 0 324 1 1308 239 84 16 chr3 3098447 3098815 -214938343 + MLT1D LTR MaLR 113 505 0 603 228 8 0 chr3 3098825 3098952 -214938206 + L1ME1 LINE L1 5518 5645 -521 1939 172 42 15 chr3 3098996 3099398 -214937760 + L1ME1 LINE L1 5747 6159 -7 477 40 40 0 chr3 3099406 3099482 -214937676 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1906 143 0 13 chr3 3099640 3099940 -214937218 + AluSx SINE Alu 1 296 -16 187 235 0 0 chr3 3099940 3099974 -214937184 - MIR3 SINE MIR -24 184 151 2164 115 81 32 chr3 3100034 3100381 -214936777 + THE1B LTR MaLR 1 364 0 5310 62 1 3 chr3 3100381 3101039 -214936119 + THE1B-int LTR MaLR 1 657 -923 1448 155 4 52 chr3 3101039 3101291 -214935867 + THE1B LTR MaLR 125 364 0 285 264 110 110 chr3 3101292 3101519 -214935639 - MIR SINE MIR -32 230 4 456 240 108 16 chr3 3101678 3101807 -214935351 - MIR3 SINE MIR -48 160 20 1299 201 0 76 chr3 3102008 3102216 -214934942 + AluJo SINE Alu 1 180 -132 2139 173 12 6 chr3 3102216 3102557 -214934601 + MER61A LTR ERV1 1 343 0 1299 201 0 76 chr3 3102557 3102651 -214934507 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 3102651 3102681 -214934477 + AT_rich Low_complexity Low_complexity 1 30 0 382 296 23 109 chr3 3103393 3103650 -214933508 - MIR SINE MIR -9 253 19 244 291 0 25 chr3 3103821 3103900 -214933258 - MIR3 SINE MIR 0 208 132 250 229 148 0 chr3 3103903 3103964 -214933194 - L2 LINE L2 -2 3270 3201 375 269 53 33 chr3 3104811 3104975 -214932183 - LTR43 LTR ERV1 -207 472 154 412 272 72 56 chr3 3105176 3105371 -214931787 + MLT1K LTR MaLR 224 421 -167 871 316 78 22 chr3 3105581 3106180 -214930978 + L1ME4a LINE L1 5348 5980 -141 1585 259 14 11 chr3 3106290 3106649 -214930509 + MLT1A2 LTR MaLR 1 360 -14 333 183 42 0 chr3 3107075 3107146 -214930012 + MER116 DNA Mariner 1 74 -6 2075 128 6 10 chr3 3108883 3109227 -214927931 - AluSx SINE Alu 0 343 1 234 222 139 28 chr3 3109828 3109936 -214927222 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 3110618 3111063 -214926095 - MLT1D LTR MaLR 0 505 46 1679 184 62 42 chr3 3111065 3111246 -214925912 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 3111246 3111888 -214925270 + LTR9 LTR ERV1 1 612 0 1679 184 62 42 chr3 3111888 3111998 -214925160 - MLT2D LTR ERVL -179 235 129 2393 60 0 13 chr3 3111998 3112297 -214924861 + AluY SINE Alu 1 295 -16 1679 184 62 42 chr3 3112297 3112407 -214924751 - MLT2D LTR ERVL -285 129 1 237 143 24 24 chr3 3112415 3112457 -214924701 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 3112474 3112664 -214924494 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 3112917 3112999 -214924159 - L2 LINE L2 -2 3270 3192 223 309 53 59 chr3 3113534 3113613 -214923545 - MIR SINE MIR -40 222 143 2289 83 48 0 chr3 3113613 3113902 -214923256 - AluSc SINE Alu -6 303 1 223 309 53 59 chr3 3113902 3113974 -214923184 - MIR SINE MIR -119 143 72 4187 118 24 5 chr3 3114597 3115188 -214921970 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 3115259 3115431 -214921727 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 3115521 3115819 -214921339 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 3115819 3116344 -214920814 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 3116344 3116558 -214920600 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 3116826 3116955 -214920203 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 3118363 3118763 -214918395 - LTR47A LTR ERVL 0 452 1 4812 139 44 65 chr3 3118775 3120256 -214916902 - MER83B-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 3120257 3120312 -214916846 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 3120316 3120345 -214916813 + (TG)n Simple_repeat Simple_repeat 2 30 0 2202 64 37 7 chr3 3120365 3120660 -214916498 - MLT2A1 LTR ERVL -140 304 1 4759 221 82 41 chr3 3120660 3121659 -214915499 - MER83B-int LTR ERV1 -2026 2165 1209 216 0 0 0 chr3 3121659 3121683 -214915475 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 891 129 0 30 chr3 3121685 3121817 -214915341 - FLAM_C SINE Alu -5 128 1 4759 221 82 41 chr3 3121817 3122038 -214915120 - MER83B-int LTR ERV1 -2982 1209 891 1570 181 4 0 chr3 3122041 3122322 -214914836 - MER41B LTR ERV1 -353 282 1 699 171 43 41 chr3 3122339 3122533 -214914625 - MER83B-int LTR ERV1 -2590 2290 2009 307 293 75 34 chr3 3122675 3122822 -214914336 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 3122836 3122854 -214914304 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 3122854 3123226 -214913932 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 3123226 3123592 -214913566 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 3123608 3123814 -214913344 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 3124330 3124358 -214912800 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 3124358 3124661 -214912497 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 3124683 3124767 -214912391 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 3124998 3125084 -214912074 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 3125084 3125772 -214911386 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 3125772 3126178 -214910980 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 3126299 3126539 -214910619 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 3126957 3126998 -214910160 + AT_rich Low_complexity Low_complexity 1 41 0 1853 173 7 0 chr3 3126998 3127304 -214909854 + AluJb SINE Alu 1 308 -4 243 0 0 0 chr3 3127304 3127331 -214909827 + (TA)n Simple_repeat Simple_repeat 1 27 0 * 252 0 0 0 chr3 3127330 3127358 -214909800 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 3128679 3128700 -214908458 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 3129184 3129624 -214907534 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 3129717 3129781 -214907377 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 3129784 3129824 -214907334 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 3129824 3129924 -214907234 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 3129838 3129935 -214907223 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 3129974 3130438 -214906720 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 3131802 3132003 -214905155 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 3133321 3133762 -214903396 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 3133771 3134176 -214902982 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 3134176 3134387 -214902771 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 3134726 3134856 -214902302 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 3135027 3135085 -214902073 + MIR3 SINE MIR 8 62 -146 4922 172 27 34 chr3 3135195 3136581 -214900577 + L1MB3 LINE L1 4810 6181 -2 2324 135 33 33 chr3 3138105 3138174 -214898984 - THE1B LTR MaLR 0 364 296 1994 125 3 14 chr3 3138174 3138471 -214898687 + AluSx SINE Alu 1 294 -18 2324 135 33 33 chr3 3138471 3138765 -214898393 - THE1B LTR MaLR -67 297 1 297 320 70 31 chr3 3139536 3139664 -214897494 + L2 LINE L2 3132 3264 -8 1928 147 3 13 chr3 3139899 3140212 -214896946 - AluJb SINE Alu -2 310 1 1721 170 10 10 chr3 3141146 3141446 -214895712 + AluJo SINE Alu 1 300 -12 1280 177 42 100 chr3 3141461 3141771 -214895387 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 3141843 3141923 -214895235 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 3142015 3142380 -214894778 + THE1B LTR MaLR 1 364 0 621 317 176 32 chr3 3142383 3142724 -214894434 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 3143830 3143968 -214893190 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 3144024 3144176 -214892982 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 3144479 3144570 -214892588 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 3144570 3144891 -214892267 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 3144891 3145033 -214892125 - Charlie8 DNA MER1_type -218 123 2 5415 129 16 5 chr3 3145303 3146119 -214891039 - L1MC1 LINE L1 0 6333 5509 442 306 25 13 chr3 3147173 3147330 -214889828 + MIR SINE MIR 104 262 0 337 258 13 0 chr3 3147511 3147598 -214889560 + MIR SINE MIR 40 126 -92 311 301 68 20 chr3 3147599 3147745 -214889413 + MIR SINE MIR 49 201 -61 993 215 45 0 chr3 3147991 3148191 -214888967 + MER3 DNA MER1_type 1 209 0 2426 96 0 0 chr3 3148712 3149024 -214888134 + AluSx SINE Alu 1 312 0 580 294 99 14 chr3 3149199 3149420 -214887738 + MIR SINE MIR 18 257 -5 261 119 48 0 chr3 3150249 3150291 -214886867 + MLT1D LTR MaLR 308 351 -154 * 1154 164 116 58 chr3 3150267 3150578 -214886580 - MLT1D LTR MaLR -165 340 12 817 258 33 16 chr3 3150663 3150845 -214886313 + MER5A DNA MER1_type 1 185 -4 3242 138 14 68 chr3 3151146 3151502 -214885656 - LTR26B LTR ERV1 0 531 214 1604 174 19 47 chr3 3151502 3151819 -214885339 - AluJb SINE Alu -4 308 1 3242 138 14 68 chr3 3151819 3152020 -214885138 - LTR26B LTR ERV1 -317 214 4 415 253 114 32 chr3 3152186 3152344 -214884814 - MIR3 SINE MIR 0 208 38 1071 103 0 7 chr3 3152739 3152885 -214884273 - AluSg/x SINE Alu -30 279 135 438 333 0 0 chr3 3154002 3154113 -214883045 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 3154121 3154144 -214883014 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 3154203 3154590 -214882568 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 3155487 3155637 -214881521 - MER5A DNA MER1_type -10 179 1 360 364 23 6 chr3 3156156 3156332 -214880826 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 3156424 3156971 -214880187 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 3157151 3157225 -214879933 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 3157470 3157576 -214879582 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 3157952 3158105 -214879053 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 3159012 3159067 -214878091 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 3159069 3159202 -214877956 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 3159258 3159335 -214877823 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 3159704 3159771 -214877387 - L2 LINE L2 -7 3265 3198 2214 124 3 0 chr3 3159938 3160245 -214876913 + AluSq SINE Alu 1 308 -5 1188 263 59 52 chr3 3160335 3160796 -214876362 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 3160818 3160882 -214876276 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 3160882 3161276 -214875882 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 3161353 3161831 -214875327 - LTR50 LTR ERVL 0 795 124 1510 164 115 86 chr3 3161973 3162490 -214874668 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 3162508 3162695 -214874463 - MIR SINE MIR -21 241 47 1182 199 17 39 chr3 3163602 3163833 -214873325 - AluJo SINE Alu -86 226 1 819 207 92 6 chr3 3163833 3164007 -214873151 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 3165587 3165616 -214871542 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 3166094 3166209 -214870949 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 3166561 3166627 -214870531 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 3166877 3166940 -214870218 + (TG)n Simple_repeat Simple_repeat 2 64 0 366 267 0 11 chr3 3166940 3167030 -214870128 - LTR67 LTR ERVL -9 548 460 345 235 43 17 chr3 3167039 3167154 -214870004 - L1ME LINE L1 -374 5747 5630 294 290 30 53 chr3 3167686 3167817 -214869341 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 3168545 3168604 -214868554 + (TA)n Simple_repeat Simple_repeat 2 60 0 742 249 73 96 chr3 3168649 3169051 -214868107 + MLT1I LTR MaLR 1 402 -7 209 296 59 89 chr3 3169060 3169195 -214867963 - MIR SINE MIR -61 147 17 468 0 0 0 chr3 3170376 3170428 -214866730 + (CA)n Simple_repeat Simple_repeat 2 53 0 449 301 65 37 chr3 3170442 3170688 -214866470 - Charlie8 DNA MER1_type -2160 257 5 337 195 26 26 chr3 3171213 3171290 -214865868 - MLT1L LTR MaLR -536 79 3 194 298 0 0 chr3 3171305 3171362 -214865796 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 3171439 3171467 -214865691 + AT_rich Low_complexity Low_complexity 1 28 0 1121 265 70 26 chr3 3171500 3172065 -214865093 - L2 LINE L2 -159 3154 2570 1789 164 7 20 chr3 3172094 3172392 -214864766 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 3172392 3172414 -214864744 + AT_rich Low_complexity Low_complexity 1 22 0 222 338 13 0 chr3 3173557 3173634 -214863524 - MIR SINE MIR -63 145 68 186 293 35 0 chr3 3174362 3174420 -214862738 + MIR3 SINE MIR 112 171 -37 376 303 141 15 chr3 3175127 3175325 -214861833 - MIR SINE MIR 0 262 40 203 79 26 0 chr3 3176343 3176381 -214860777 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1002 146 189 5 chr3 3177224 3177409 -214859749 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 3177572 3177595 -214859563 + AT_rich Low_complexity Low_complexity 1 23 0 2289 112 0 0 chr3 3177623 3177926 -214859232 - AluSx SINE Alu -9 303 1 315 365 0 0 chr3 3178082 3178197 -214858961 - MIR3 SINE MIR -23 185 71 298 163 0 0 chr3 3178197 3178246 -214858912 + L1MC3 LINE L1 7045 7093 -692 291 262 24 12 chr3 3178250 3178334 -214858824 + MLT1F1 LTR MaLR 40 124 -443 2180 187 74 71 chr3 3178335 3178930 -214858228 + L1MC3 LINE L1 7189 7785 0 2220 112 0 13 chr3 3179717 3180020 -214857138 - AluSx SINE Alu -13 299 1 2094 121 0 0 chr3 3181021 3181326 -214855832 + AluSx SINE Alu 1 305 0 520 281 67 12 chr3 3181740 3181904 -214855254 - MER5B DNA MER1_type 0 178 6 276 87 0 43 chr3 3182616 3182662 -214854496 + L2 LINE L2 3195 3238 -75 2162 112 3 0 chr3 3183274 3183569 -214853589 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 3183757 3183914 -214853244 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 3184022 3184050 -214853108 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 3184098 3184393 -214852765 + AluSx SINE Alu 1 296 -16 2365 123 5 32 chr3 3187904 3188278 -214848880 - THE1B LTR MaLR 0 364 1 7667 128 30 8 chr3 3188607 3189919 -214847239 - Tigger1 DNA MER2_type 0 2418 1079 3359 134 107 6 chr3 3189910 3190544 -214846614 - Tigger1 DNA MER2_type -1658 760 63 * 292 211 273 19 chr3 3192396 3192557 -214844601 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 3192692 3192905 -214844253 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 3192947 3193138 -214844020 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 3193174 3193718 -214843440 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 3193989 3194015 -214843143 + AT_rich Low_complexity Low_complexity 1 26 0 360 232 36 94 chr3 3195076 3195184 -214841974 + L2 LINE L2 3182 3282 -31 2557 98 30 6 chr3 3195184 3195550 -214841608 - THE1C LTR MaLR 0 375 1 360 232 36 94 chr3 3195550 3195579 -214841579 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 3195583 3195733 -214841425 + MIR SINE MIR 34 183 -79 1688 188 40 3 chr3 3195986 3196311 -214840847 + MER1B DNA MER1_type 1 337 0 245 295 105 11 chr3 3196402 3196497 -214840661 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 3197084 3197208 -214839950 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 3197245 3197387 -214839771 - L1MC/D LINE L1 -1445 4701 4531 1890 151 18 0 chr3 3198283 3198568 -214838590 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 3198808 3198898 -214838260 + MIR SINE MIR 13 105 -157 1055 130 0 34 chr3 3202051 3202228 -214834930 + AluSg/x SINE Alu 124 294 -15 428 255 135 20 chr3 3207348 3207548 -214829610 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 3208058 3208182 -214828976 - MIR3 SINE MIR -12 196 87 2430 69 3 0 chr3 3208851 3209155 -214828003 - AluY SINE Alu -6 305 1 265 368 60 8 chr3 3209265 3209382 -214827776 + L2 LINE L2 3191 3313 0 233 274 140 18 chr3 3210449 3210506 -214826652 + L1MC/D LINE L1 5352 5401 -2407 1743 149 72 0 chr3 3210506 3210782 -214826376 - AluSx SINE Alu -16 296 1 233 274 140 18 chr3 3210782 3210888 -214826270 + L1MC/D LINE L1 5401 5535 -2273 462 306 0 0 chr3 3211060 3211171 -214825987 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 3211890 3212095 -214825063 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 3212363 3212525 -214824633 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 3212827 3212973 -214824185 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 3213020 3213076 -214824082 + (TG)n Simple_repeat Simple_repeat 1 56 0 491 221 302 0 chr3 3213120 3213292 -214823866 - MIR SINE MIR -10 252 29 2263 71 35 0 chr3 3213294 3213576 -214823582 - AluY SINE Alu -19 292 1 1877 154 3 13 chr3 3214348 3214659 -214822499 + AluJb SINE Alu 1 308 -4 206 342 57 19 chr3 3214676 3214834 -214822324 - L2 LINE L2 -192 3080 2917 432 288 113 19 chr3 3215176 3215388 -214821770 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 3215574 3215855 -214821303 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 3215859 3216686 -214820472 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 3217206 3217295 -214819863 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 3217426 3217732 -214819426 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 3218085 3218591 -214818567 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 3219198 3219423 -214817735 + MER112 DNA MER1_type 4 260 0 1498 180 17 30 chr3 3220812 3221107 -214816051 - AluJb SINE Alu -21 291 1 226 229 0 0 chr3 3221619 3221680 -214815478 + T-rich Low_complexity Low_complexity 1 61 0 7604 15 0 0 chr3 3221682 3222915 -214814243 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 3223151 3223285 -214813873 + MER33 DNA MER1_type 1 145 -2440 1734 167 20 7 chr3 3223285 3223579 -214813579 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 3223579 3223794 -214813364 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 3224021 3224186 -214812972 - MER5B DNA MER1_type -1 177 11 293 367 17 0 chr3 3224474 3224594 -214812564 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 3224783 3224913 -214812245 - FRAM SINE Alu -17 159 20 583 99 148 10 chr3 3224962 3225063 -214812095 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 3225068 3225091 -214812067 + AT_rich Low_complexity Low_complexity 1 23 0 4223 92 21 21 chr3 3225562 3225753 -214811405 + PABL_A LTR ERV1 1 191 -469 2343 93 0 7 chr3 3225753 3226063 -214811095 - AluSx SINE Alu -4 308 1 4223 92 21 21 chr3 3226063 3226522 -214810636 + PABL_A LTR ERV1 190 651 -9 1802 97 37 23 chr3 3228129 3228429 -214808729 - AluSq SINE Alu -9 304 1 888 210 189 7 chr3 3228987 3229201 -214807957 + MER2 DNA MER2_type 1 283 -61 2305 92 0 0 chr3 3229201 3229496 -214807662 - AluSx SINE Alu -13 299 5 888 210 189 7 chr3 3229496 3229572 -214807586 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 3229572 3229619 -214807539 + (GA)n Simple_repeat Simple_repeat 1 48 0 2595 258 52 18 chr3 3229648 3230678 -214806480 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 3230780 3231065 -214806093 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 3231065 3231087 -214806071 + AT_rich Low_complexity Low_complexity 1 22 0 2477 233 26 51 chr3 3231087 3231127 -214806031 + L1ME1 LINE L1 5403 5443 -723 2053 131 7 0 chr3 3231127 3231418 -214805740 - AluSg SINE Alu -17 293 1 2477 233 26 51 chr3 3231418 3231921 -214805237 + L1ME1 LINE L1 5443 5957 -209 2189 113 0 0 chr3 3231921 3232214 -214804944 + AluSg SINE Alu 1 293 -17 2477 233 26 51 chr3 3232214 3232397 -214804761 + L1ME1 LINE L1 5957 6111 -55 1731 151 156 42 chr3 3232397 3232470 -214804688 - MSTA LTR MaLR 0 428 365 2413 52 0 29 chr3 3232470 3232776 -214804382 + AluY SINE Alu 1 297 -14 1731 151 156 42 chr3 3232776 3233086 -214804072 - MSTA LTR MaLR -63 365 1 2477 233 26 51 chr3 3233086 3233135 -214804023 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 3233601 3233896 -214803262 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 3234235 3234261 -214802897 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 3234336 3234512 -214802646 - MIR SINE MIR -32 230 32 672 178 8 0 chr3 3234852 3234970 -214802188 - MLT1D LTR MaLR 0 505 387 2275 104 0 0 chr3 3235179 3235477 -214801681 - AluSx SINE Alu -3 309 12 1523 195 3 36 chr3 3235700 3236008 -214801150 + AluJo SINE Alu 1 298 -14 863 168 0 0 chr3 3236052 3236177 -214800981 + AluJb SINE Alu 1 125 -187 1857 158 18 0 chr3 3237038 3237322 -214799836 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr3 3237326 3237354 -214799804 + AT_rich Low_complexity Low_complexity 1 28 0 202 144 22 0 chr3 3237615 3237661 -214799497 + MIR SINE MIR 99 146 -62 2022 137 0 22 chr3 3237776 3238091 -214799067 + AluSx SINE Alu 3 310 -2 4444 182 19 25 chr3 3238372 3239252 -214797906 - L1MB8 LINE L1 0 6178 5304 839 199 6 0 chr3 3239255 3239411 -214797747 - FRAM SINE Alu 0 40 1 2019 181 57 53 chr3 3239413 3239541 -214797617 - L1MB8 LINE L1 -830 5316 5190 2072 121 4 4 chr3 3239541 3239843 -214797315 - AluSx SINE Alu 0 302 1 2019 181 57 53 chr3 3239843 3239968 -214797190 - L1MB8 LINE L1 -956 5190 5067 2284 110 0 10 chr3 3239968 3240277 -214796881 + AluSx SINE Alu 6 311 -1 2019 181 57 53 chr3 3240277 3240546 -214796612 - L1MB8 LINE L1 -1079 5067 4789 274 180 16 141 chr3 3240967 3241095 -214796063 + MLT1H LTR MaLR 438 549 0 338 249 115 91 chr3 3241183 3241241 -214795917 - L1ME4a LINE L1 -232 5889 5834 1906 135 7 0 chr3 3241241 3241522 -214795636 + AluSg SINE Alu 13 295 -15 338 249 115 91 chr3 3241522 3241716 -214795442 - L1ME4a LINE L1 -287 5834 5631 2215 108 0 7 chr3 3241963 3242260 -214794898 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 3242364 3242390 -214794768 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2277 97 0 3 chr3 3242549 3242838 -214794320 + AluSx SINE Alu 1 288 -24 251 284 0 68 chr3 3245633 3245721 -214791437 - L2 LINE L2 -23 3249 3168 261 0 0 0 chr3 3246907 3246936 -214790222 + (TTG)n Simple_repeat Simple_repeat 2 30 0 214 409 0 0 chr3 3248133 3248226 -214788932 + MIR SINE MIR 21 113 -149 964 186 9 24 chr3 3249842 3249983 -214787175 + MER3 DNA MER1_type 2 141 -68 1953 143 7 7 chr3 3249983 3250270 -214786888 + AluSx SINE Alu 1 287 -25 964 186 9 24 chr3 3250270 3250338 -214786820 + MER3 DNA MER1_type 141 208 -1 269 269 86 30 chr3 3250432 3250666 -214786492 + L1ME4a LINE L1 5873 6119 -2 665 224 39 86 chr3 3250753 3251008 -214786150 + MER112 DNA MER1_type 6 248 -12 1274 124 0 43 chr3 3251139 3251325 -214785833 + AluSx SINE Alu 1 178 -134 383 246 53 18 chr3 3251988 3252102 -214785056 + MIR3 SINE MIR 14 131 -77 1827 146 38 0 chr3 3253126 3253296 -214783862 - AluSx SINE Alu -14 298 111 414 0 0 0 chr3 3253296 3253342 -214783816 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1827 146 38 0 chr3 3253342 3253458 -214783700 - AluSx SINE Alu -201 111 1 253 109 455 0 chr3 3253847 3253902 -214783256 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 3254353 3254664 -214782494 + AluSx SINE Alu 1 313 0 1934 163 0 0 chr3 3254683 3254971 -214782187 - AluJb SINE Alu -19 293 6 950 117 7 15 chr3 3254971 3255108 -214782050 - AluJb SINE Alu -176 136 1 294 320 58 19 chr3 3255265 3255421 -214781737 - MIR3 SINE MIR -8 200 39 2021 140 10 0 chr3 3255617 3255910 -214781248 + AluSx SINE Alu 1 296 -16 1493 182 10 42 chr3 3257319 3257632 -214779526 - AluJo SINE Alu -9 303 1 768 209 12 6 chr3 3257668 3257831 -214779327 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3258231 3258532 -214778626 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3259659 3259755 -214777403 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3260134 3260430 -214776728 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3261056 3261353 -214775805 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3261353 3261546 -214775612 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3261797 3261915 -214775243 + L2 LINE L2 3170 3303 -10 2330 101 7 0 chr3 3262185 3262493 -214774665 + AluSp SINE Alu 1 310 -3 537 188 240 19 chr3 3262753 3262907 -214774251 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 3263085 3263118 -214774040 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 3263156 3263299 -214773859 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 3263449 3263516 -214773642 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 3263785 3264090 -214773068 - AluSg SINE Alu -5 305 1 426 230 104 22 chr3 3266836 3266971 -214770187 - L2 LINE L2 -5 3267 3122 2176 99 51 0 chr3 3267339 3267633 -214769525 + AluSx SINE Alu 1 309 -3 672 178 8 0 chr3 3267842 3267960 -214769198 + MLT1D LTR MaLR 387 505 0 499 258 141 0 chr3 3268300 3268463 -214768695 + MIR SINE MIR 32 217 -45 180 77 0 0 chr3 3268551 3268577 -214768581 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1752 139 58 41 chr3 3268916 3269211 -214767947 - AluSx SINE Alu -12 300 1 2777 231 45 80 chr3 3269677 3269726 -214767432 - L1ME1 LINE L1 -6 6160 6111 1817 140 153 42 chr3 3269726 3270037 -214767121 + MSTA LTR MaLR 1 365 -63 2463 52 0 29 chr3 3270037 3270343 -214766815 - AluY SINE Alu -14 297 1 1817 140 153 42 chr3 3270343 3270416 -214766742 + MSTA LTR MaLR 365 428 0 2777 231 45 80 chr3 3270416 3270599 -214766559 - L1ME1 LINE L1 -55 6111 5923 2215 113 0 0 chr3 3270599 3270892 -214766266 - AluSg SINE Alu -17 293 1 2777 231 45 80 chr3 3270892 3271395 -214765763 - L1ME1 LINE L1 -243 5923 5404 1812 165 7 0 chr3 3271395 3271686 -214765472 + AluSg SINE Alu 1 293 -17 2777 231 45 80 chr3 3271686 3271748 -214765410 - L1ME1 LINE L1 -762 5404 5411 1536 193 14 14 chr3 3271748 3272033 -214765125 - AluJb SINE Alu -27 285 1 2777 231 45 80 chr3 3272033 3272091 -214765067 - L1ME1 LINE L1 -754 5412 5353 2948 249 57 23 chr3 3272135 3273165 -214763993 - L1ME1 LINE L1 -1790 4356 3292 308 64 21 0 chr3 3273193 3273240 -214763918 + (TC)n Simple_repeat Simple_repeat 1 48 0 930 213 189 7 chr3 3273240 3273316 -214763842 - MER2 DNA MER2_type 0 344 283 2335 92 0 0 chr3 3273316 3273611 -214763547 + AluSx SINE Alu 5 299 -13 930 213 189 7 chr3 3273611 3273825 -214763333 - MER2 DNA MER2_type -61 283 1 1863 97 37 23 chr3 3274383 3274683 -214762475 + AluSq SINE Alu 1 304 -9 22 0 0 0 chr3 3275560 3275582 -214761576 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 3276314 3276344 -214760814 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 3277360 3277685 -214759473 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 3277721 3277884 -214759274 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3278284 3278585 -214758573 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3279712 3279808 -214757350 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3280187 3280483 -214756675 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3281109 3281406 -214755752 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3281406 3281599 -214755559 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3281850 3281968 -214755190 + L2 LINE L2 3170 3303 -10 2206 106 7 0 chr3 3282238 3282531 -214754627 + AluSx SINE Alu 1 295 -17 2222 114 23 0 chr3 3282635 3282934 -214754224 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 3283518 3283648 -214753510 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 3283731 3283888 -214753270 + MIR3 SINE MIR 45 208 0 1960 221 47 10 chr3 3284046 3284553 -214752605 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 3284571 3284786 -214752372 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 3285214 3285500 -214751658 - AluSx SINE Alu -18 294 1 1706 195 7 0 chr3 3286247 3286539 -214750619 + AluJb SINE Alu 1 294 -18 396 0 0 0 chr3 3286540 3286584 -214750574 + (CA)n Simple_repeat Simple_repeat 2 45 0 659 165 78 0 chr3 3286680 3286795 -214750363 - FLAM_C SINE Alu -19 124 1 213 346 30 20 chr3 3286908 3287009 -214750149 + L2 LINE L2 3169 3270 -2 1517 113 0 18 chr3 3287254 3287475 -214749683 + AluSg SINE Alu 1 217 -93 2337 87 0 3 chr3 3287679 3287979 -214749179 + AluY SINE Alu 1 299 -12 2175 104 3 3 chr3 3288132 3288420 -214748738 + AluSq SINE Alu 1 288 -25 280 358 9 18 chr3 3288501 3288610 -214748548 + MIR SINE MIR 14 121 -141 1775 164 21 3 chr3 3288660 3288946 -214748212 - AluJb SINE Alu -21 291 1 1210 149 0 0 chr3 3288946 3289147 -214748011 - LTR26B LTR ERV1 -327 204 4 414 253 114 32 chr3 3289313 3289471 -214747687 - MIR3 SINE MIR 0 208 38 1064 103 0 7 chr3 3289866 3290012 -214747146 - AluSg/x SINE Alu -30 279 135 416 351 0 0 chr3 3291129 3291240 -214745918 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 3291248 3291271 -214745887 + AT_rich Low_complexity Low_complexity 1 23 0 2537 103 8 5 chr3 3291330 3291717 -214745441 + L1PB1 LINE L1 5763 6150 -1 305 347 200 7 chr3 3292611 3292761 -214744397 - MER5A DNA MER1_type -10 179 1 217 210 65 32 chr3 3292781 3292843 -214744315 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 3292871 3292906 -214744252 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 381 358 23 6 chr3 3293281 3293457 -214743701 + MIR3 SINE MIR 17 195 -13 1657 201 16 101 chr3 3293549 3294096 -214743062 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 3294276 3294350 -214742808 + (TA)n Simple_repeat Simple_repeat 2 76 0 208 274 170 28 chr3 3294595 3294701 -214742457 - MIR3 SINE MIR -4 204 84 322 281 183 7 chr3 3295077 3295230 -214741928 - MIR3 SINE MIR -14 194 15 231 291 0 0 chr3 3296137 3296192 -214740966 - MIR3 SINE MIR 0 208 154 367 263 53 0 chr3 3296194 3296327 -214740831 + MER117 DNA MER1_type 2 141 -56 199 208 260 39 chr3 3296383 3296460 -214740698 - MIR3 SINE MIR -52 156 63 209 373 15 0 chr3 3296833 3296900 -214740258 - L2 LINE L2 -7 3265 3198 2243 123 3 0 chr3 3297067 3297376 -214739782 + AluSq SINE Alu 1 310 -3 1061 242 66 44 chr3 3297475 3297903 -214739255 - L1ME3A LINE L1 -8 6162 5730 422 78 16 0 chr3 3297949 3298013 -214739145 - MER41A LTR ERV1 -90 464 400 960 287 89 2 chr3 3298013 3298407 -214738751 - L1ME3A LINE L1 -452 5718 5291 730 236 220 0 chr3 3298484 3298942 -214738216 - LTR50 LTR ERVL 0 795 140 1378 166 115 86 chr3 3299104 3299621 -214737537 - LTR36 LTR ERV1 0 611 1 648 222 63 16 chr3 3299639 3299828 -214737330 - MIR SINE MIR -21 241 44 1329 178 24 0 chr3 3300733 3300946 -214736212 - AluJo SINE Alu -86 226 9 366 315 53 107 chr3 3300987 3301362 -214735796 + L2 LINE L2 2918 3272 0 1895 196 107 11 chr3 3301764 3302046 -214735112 - MLT1D LTR MaLR 0 505 161 1801 174 13 30 chr3 3302046 3302345 -214734813 - AluJo SINE Alu -18 294 1 1895 196 107 11 chr3 3302345 3302520 -214734638 - MLT1D LTR MaLR -344 161 4 183 276 107 102 chr3 3302683 3302908 -214734250 + MIR SINE MIR 34 259 -3 22 35 0 0 chr3 3304100 3304129 -214733029 + AT_rich Low_complexity Low_complexity 1 29 0 285 296 61 17 chr3 3304607 3304722 -214732436 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 3305074 3305140 -214732018 + AT_rich Low_complexity Low_complexity 1 66 0 351 78 0 0 chr3 3305389 3305440 -214731718 + (TG)n Simple_repeat Simple_repeat 2 52 0 302 276 0 11 chr3 3305442 3305529 -214731629 - LTR67 LTR ERVL -12 545 460 293 235 43 17 chr3 3305538 3305653 -214731505 - L1ME LINE L1 -374 5747 5630 300 290 30 53 chr3 3306185 3306316 -214730842 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 3307044 3307103 -214730055 + (TA)n Simple_repeat Simple_repeat 2 60 0 618 248 53 96 chr3 3307195 3307550 -214729608 + MLT1I LTR MaLR 63 402 -7 210 296 59 89 chr3 3307559 3307694 -214729464 - MIR SINE MIR -61 147 17 393 22 0 0 chr3 3308875 3308921 -214728237 + (CA)n Simple_repeat Simple_repeat 2 47 0 384 297 65 37 chr3 3308935 3309181 -214727977 - Charlie8 DNA MER1_type -2160 257 5 305 195 26 26 chr3 3309706 3309783 -214727375 - MLT1L LTR MaLR -536 79 3 199 298 0 0 chr3 3309798 3309855 -214727303 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 3309932 3309960 -214727198 + AT_rich Low_complexity Low_complexity 1 28 0 1098 267 70 26 chr3 3309993 3310558 -214726600 - L2 LINE L2 -159 3154 2570 1818 161 7 20 chr3 3310587 3310885 -214726273 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 3310888 3310911 -214726247 + (TA)n Simple_repeat Simple_repeat 2 24 0 228 338 13 0 chr3 3312054 3312131 -214725027 - MIR SINE MIR -63 145 68 192 293 35 0 chr3 3312859 3312917 -214724241 + MIR3 SINE MIR 112 171 -37 383 301 155 14 chr3 3313630 3313849 -214723309 - MIR SINE MIR 0 262 13 203 79 26 0 chr3 3314846 3314884 -214722274 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 920 146 189 5 chr3 3315727 3315912 -214721246 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 3316075 3316098 -214721060 + AT_rich Low_complexity Low_complexity 1 23 0 2290 112 0 0 chr3 3316126 3316429 -214720729 - AluSx SINE Alu -9 303 1 329 365 0 0 chr3 3316585 3316700 -214720458 - MIR3 SINE MIR -23 185 71 276 163 0 0 chr3 3316700 3316749 -214720409 + L1MC3 LINE L1 7045 7093 -692 258 262 24 12 chr3 3316753 3316837 -214720321 + MLT1F1 LTR MaLR 40 124 -443 1930 185 74 71 chr3 3316838 3317433 -214719725 + L1MC3 LINE L1 7189 7785 0 2223 112 0 13 chr3 3318220 3318523 -214718635 - AluSx SINE Alu -13 299 1 2076 124 0 0 chr3 3319524 3319829 -214717329 + AluSx SINE Alu 1 305 0 527 281 67 12 chr3 3320243 3320407 -214716751 - MER5B DNA MER1_type 0 178 6 275 87 0 43 chr3 3321119 3321165 -214715993 + L2 LINE L2 3195 3238 -75 2177 108 3 0 chr3 3321777 3322072 -214715086 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 3322260 3322417 -214714741 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 3322525 3322553 -214714605 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 3322601 3322896 -214714262 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr3 3322973 3322994 -214714164 + AT_rich Low_complexity Low_complexity 1 21 0 2365 123 5 32 chr3 3326410 3326784 -214710374 - THE1B LTR MaLR 0 364 1 7698 127 30 8 chr3 3327113 3328425 -214708733 - Tigger1 DNA MER2_type 0 2418 1079 3374 133 107 6 chr3 3328416 3329050 -214708108 - Tigger1 DNA MER2_type -1658 760 63 * 292 211 273 19 chr3 3330902 3331063 -214706095 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 3331198 3331411 -214705747 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 3331453 3331644 -214705514 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 3331680 3332224 -214704934 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 3332495 3332521 -214704637 + AT_rich Low_complexity Low_complexity 1 26 0 383 225 36 94 chr3 3333582 3333690 -214703468 + L2 LINE L2 3182 3282 -31 2544 92 30 11 chr3 3333690 3334058 -214703100 - THE1C LTR MaLR 0 375 1 383 225 36 94 chr3 3334058 3334087 -214703071 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 3334091 3334241 -214702917 + MIR SINE MIR 34 183 -79 1676 191 40 3 chr3 3334494 3334819 -214702339 + MER1B DNA MER1_type 1 337 0 268 284 105 11 chr3 3334910 3335005 -214702153 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 3335592 3335716 -214701442 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 3335753 3335895 -214701263 - L1MC/D LINE L1 -1445 4701 4531 1914 147 18 0 chr3 3336791 3337076 -214700082 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 3337316 3337406 -214699752 + MIR SINE MIR 13 105 -157 1102 122 0 33 chr3 3340560 3340740 -214696418 + AluSg/x SINE Alu 124 297 -12 186 43 0 0 chr3 3341051 3341074 -214696084 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr3 3344095 3344126 -214693032 + AT_rich Low_complexity Low_complexity 1 31 0 428 255 135 20 chr3 3345900 3346100 -214691058 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 3346610 3346734 -214690424 - MIR3 SINE MIR -12 196 87 2465 66 0 0 chr3 3347403 3347706 -214689452 - AluY SINE Alu -8 303 1 244 376 60 8 chr3 3347816 3347933 -214689225 + L2 LINE L2 3191 3313 0 233 274 140 18 chr3 3349000 3349057 -214688101 + L1MC/D LINE L1 5352 5401 -2407 1729 149 72 0 chr3 3349057 3349333 -214687825 - AluSx SINE Alu -16 296 1 233 274 140 18 chr3 3349333 3349439 -214687719 + L1MC/D LINE L1 5401 5535 -2273 475 297 0 0 chr3 3349611 3349722 -214687436 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 3350441 3350646 -214686512 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 3350914 3351076 -214686082 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 3351378 3351524 -214685634 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 3351571 3351627 -214685531 + (TG)n Simple_repeat Simple_repeat 1 56 0 479 233 302 0 chr3 3351671 3351843 -214685315 - MIR SINE MIR -10 252 29 2303 67 35 0 chr3 3351845 3352128 -214685030 - AluY SINE Alu -18 293 1 1877 154 3 13 chr3 3352901 3353212 -214683946 + AluJb SINE Alu 1 308 -4 432 288 113 19 chr3 3353729 3353941 -214683217 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 3354127 3354408 -214682750 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 3354412 3355239 -214681919 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 3355759 3355848 -214681310 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 3355979 3356285 -214680873 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 3356638 3357144 -214680014 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 3357751 3357976 -214679182 + MER112 DNA MER1_type 4 260 0 1705 157 17 30 chr3 3359361 3359660 -214677498 - AluJb SINE Alu -17 295 1 226 229 0 0 chr3 3360172 3360233 -214676925 + T-rich Low_complexity Low_complexity 1 61 0 7634 14 0 0 chr3 3360235 3361468 -214675690 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 3361704 3361838 -214675320 + MER33 DNA MER1_type 1 145 -2440 1734 167 20 7 chr3 3361838 3362132 -214675026 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 3362132 3362347 -214674811 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 3362574 3362739 -214674419 - MER5B DNA MER1_type -1 177 11 272 375 17 0 chr3 3363034 3363154 -214674004 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 3363343 3363473 -214673685 - FRAM SINE Alu -17 159 20 558 109 148 10 chr3 3363522 3363623 -214673535 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 3363628 3363651 -214673507 + AT_rich Low_complexity Low_complexity 1 23 0 4312 90 17 21 chr3 3364122 3364316 -214672842 + PABL_A LTR ERV1 1 194 -466 2223 94 0 7 chr3 3364316 3364613 -214672545 - AluSx SINE Alu -17 295 1 4312 90 17 21 chr3 3364613 3365072 -214672086 + PABL_A LTR ERV1 194 651 -9 1772 100 37 23 chr3 3366679 3366979 -214670179 - AluSq SINE Alu -9 304 1 888 210 189 7 chr3 3367537 3367751 -214669407 + MER2 DNA MER2_type 1 283 -61 2320 94 0 0 chr3 3367751 3368050 -214669108 - AluSx SINE Alu -9 303 5 888 210 189 7 chr3 3368050 3368126 -214669032 + MER2 DNA MER2_type 283 344 0 272 70 23 0 chr3 3368126 3368169 -214668989 + (GA)n Simple_repeat Simple_repeat 1 44 0 2580 259 52 18 chr3 3368197 3369227 -214667931 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 3369329 3369614 -214667544 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 3369614 3369636 -214667522 + AT_rich Low_complexity Low_complexity 1 22 0 2461 234 26 51 chr3 3369636 3369676 -214667482 + L1ME1 LINE L1 5403 5443 -723 2069 131 7 0 chr3 3369676 3369967 -214667191 - AluSg SINE Alu -17 293 1 2461 234 26 51 chr3 3369967 3370470 -214666688 + L1ME1 LINE L1 5443 5957 -209 2198 112 0 0 chr3 3370470 3370764 -214666394 + AluSg SINE Alu 1 294 -16 2461 234 26 51 chr3 3370764 3370947 -214666211 + L1ME1 LINE L1 5957 6111 -55 1827 140 153 42 chr3 3370947 3371020 -214666138 - MSTA LTR MaLR 0 428 365 2414 49 0 30 chr3 3371020 3371325 -214665833 + AluY SINE Alu 1 296 -15 1827 140 153 42 chr3 3371325 3371636 -214665522 - MSTA LTR MaLR -63 365 1 2461 234 26 51 chr3 3371636 3371685 -214665473 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 3372151 3372446 -214664712 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 3372785 3372811 -214664347 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 3372886 3373062 -214664096 - MIR SINE MIR -32 230 32 609 178 8 0 chr3 3373402 3373520 -214663638 - MLT1D LTR MaLR 0 505 387 2271 104 0 0 chr3 3373729 3374027 -214663131 - AluSx SINE Alu -3 309 12 1549 192 3 36 chr3 3374250 3374558 -214662600 + AluJo SINE Alu 1 298 -14 870 168 0 0 chr3 3374602 3374727 -214662431 + AluJb SINE Alu 1 125 -187 1864 158 18 0 chr3 3375588 3375872 -214661286 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 3375882 3375963 -214661195 + (TA)n Simple_repeat Simple_repeat 1 84 0 217 144 22 0 chr3 3376234 3376280 -214660878 + MIR SINE MIR 99 146 -62 2014 137 0 22 chr3 3376395 3376710 -214660448 + AluSx SINE Alu 3 310 -2 4037 183 19 25 chr3 3376991 3377871 -214659287 - L1MB8 LINE L1 0 6178 5304 849 199 6 0 chr3 3377874 3378030 -214659128 - FRAM SINE Alu 0 40 1 1811 181 57 53 chr3 3378032 3378160 -214658998 - L1MB8 LINE L1 -830 5316 5190 2045 125 4 4 chr3 3378160 3378462 -214658696 - AluSx SINE Alu 0 302 1 1811 181 57 53 chr3 3378462 3378587 -214658571 - L1MB8 LINE L1 -956 5190 5067 2273 110 0 10 chr3 3378587 3378896 -214658262 + AluSx SINE Alu 6 311 -1 1811 181 57 53 chr3 3378896 3379165 -214657993 - L1MB8 LINE L1 -1079 5067 4789 248 172 16 141 chr3 3379586 3379714 -214657444 + MLT1H LTR MaLR 438 549 0 381 249 115 91 chr3 3379802 3379860 -214657298 - L1ME4a LINE L1 -232 5889 5834 1891 135 7 0 chr3 3379860 3380141 -214657017 + AluSg SINE Alu 13 295 -15 381 249 115 91 chr3 3380141 3380335 -214656823 - L1ME4a LINE L1 -287 5834 5631 2148 102 10 7 chr3 3380582 3380876 -214656282 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 3380981 3381007 -214656151 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 217 207 138 17 chr3 3381088 3381146 -214656012 + L2 LINE L2 3246 3310 -3 2240 100 0 3 chr3 3381166 3381455 -214655703 + AluSx SINE Alu 1 288 -24 268 284 0 68 chr3 3384250 3384338 -214652820 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 3385524 3385550 -214651608 + (TTG)n Simple_repeat Simple_repeat 2 27 0 257 385 57 0 chr3 3386747 3386869 -214650289 + MIR SINE MIR 21 149 -113 964 186 9 24 chr3 3388456 3388597 -214648561 + MER3 DNA MER1_type 2 141 -68 1953 143 7 7 chr3 3388597 3388884 -214648274 + AluSx SINE Alu 1 287 -25 964 186 9 24 chr3 3388884 3388952 -214648206 + MER3 DNA MER1_type 141 208 -1 269 269 86 30 chr3 3389046 3389280 -214647878 + L1ME4a LINE L1 5873 6119 -2 665 224 39 86 chr3 3389367 3389622 -214647536 + MER112 DNA MER1_type 6 248 -12 1274 124 0 43 chr3 3389753 3389939 -214647219 + AluSx SINE Alu 1 178 -134 383 246 53 18 chr3 3390602 3390716 -214646442 + MIR3 SINE MIR 14 131 -77 1871 146 35 0 chr3 3391740 3391911 -214645247 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 3391911 3391957 -214645201 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1871 146 35 0 chr3 3391957 3392073 -214645085 - AluSx SINE Alu -200 112 1 253 109 455 0 chr3 3392462 3392517 -214644641 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 3392968 3393279 -214643879 + AluSx SINE Alu 1 313 0 1918 167 0 0 chr3 3393298 3393586 -214643572 - AluJb SINE Alu -19 293 6 950 117 7 15 chr3 3393586 3393723 -214643435 - AluJb SINE Alu -176 136 1 294 320 58 19 chr3 3393881 3394037 -214643121 - MIR3 SINE MIR -8 200 39 2021 140 10 0 chr3 3394233 3394526 -214642632 + AluSx SINE Alu 1 296 -16 191 333 0 43 chr3 3395101 3395170 -214641988 - L3 LINE CR1 -4 1573 1508 1011 190 20 20 chr3 3395229 3395429 -214641729 - MER20 DNA MER1_type -19 200 1 689 222 102 9 chr3 3395869 3396085 -214641073 + MIR SINE MIR 14 249 -13 183 310 113 0 chr3 3396434 3396505 -214640653 + MIR SINE MIR 29 107 -155 2466 77 0 3 chr3 3396640 3396950 -214640208 - AluY SINE Alu -2 309 1 225 253 24 60 chr3 3397054 3397137 -214640021 - MIR SINE MIR -81 127 48 2145 116 3 16 chr3 3397925 3398235 -214638923 + AluSx SINE Alu 4 309 -3 3383 163 28 2 chr3 3398236 3398842 -214638316 + L1MB2 LINE L1 5550 6171 0 477 241 195 0 chr3 3398897 3399071 -214638087 - MIR SINE MIR -6 256 49 481 274 108 25 chr3 3399405 3399646 -214637512 - MER5C DNA MER1_type -43 281 21 196 348 38 52 chr3 3399838 3400048 -214637110 - L2 LINE L2 -544 2770 2564 247 307 44 18 chr3 3400873 3400987 -214636171 + MER69A DNA AcHobo 1 117 -60 1774 191 68 28 chr3 3400992 3401189 -214635969 - L1MD2 LINE L1 -1 6358 6170 2276 110 3 0 chr3 3401189 3401499 -214635659 - AluSx SINE Alu -1 311 1 1774 191 68 28 chr3 3401499 3401700 -214635458 - L1MD2 LINE L1 -189 6170 5944 309 245 96 11 chr3 3401700 3401794 -214635364 + MER69A DNA AcHobo 76 177 0 2556 57 0 22 chr3 3402076 3402394 -214634764 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 3402783 3402805 -214634353 + AT_rich Low_complexity Low_complexity 1 22 0 186 310 0 69 chr3 3402857 3402944 -214634214 - MIR SINE MIR -149 113 33 1899 72 103 4 chr3 3403040 3403302 -214633856 + AluSc SINE Alu 5 292 -17 263 217 0 17 chr3 3403656 3403716 -214633442 + MER91 DNA MER1_type 81 139 -1 208 235 123 0 chr3 3404601 3404682 -214632476 + MIR3 SINE MIR 102 192 -16 3399 119 12 2 chr3 3405725 3406231 -214630927 - L1PB3 LINE L1 0 6154 5644 820 84 0 19 chr3 3406271 3406378 -214630780 - FLAM_A SINE Alu -16 126 22 305 265 34 23 chr3 3408129 3408258 -214628900 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 3408708 3408878 -214628280 - MIR SINE MIR -1 261 51 1904 128 16 26 chr3 3408878 3409184 -214627974 - AluSx SINE Alu -9 303 1 201 211 0 0 chr3 3409485 3409537 -214627621 + (CA)n Simple_repeat Simple_repeat 1 52 0 231 254 140 18 chr3 3410174 3410288 -214626870 - MIR3 SINE MIR -80 128 1 1824 185 0 3 chr3 3411955 3412253 -214624905 + AluJo SINE Alu 1 297 -15 582 250 152 10 chr3 3412565 3412769 -214624389 + MIR SINE MIR 16 248 -14 1991 140 13 0 chr3 3412890 3413197 -214623961 - AluSx SINE Alu -1 311 1 240 234 261 0 chr3 3413300 3413411 -214623747 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 3413512 3413750 -214623408 - L2 LINE L2 -825 2489 2232 2320 106 0 3 chr3 3414097 3414399 -214622759 - AluSx SINE Alu -11 301 1 320 316 18 9 chr3 3414895 3415009 -214622149 + L2 LINE L2 3158 3272 0 1903 145 3 3 chr3 3415183 3415465 -214621693 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 3415539 3415649 -214621509 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 3416101 3416239 -214620919 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 3417053 3417346 -214619812 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 3417448 3417747 -214619411 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 3418331 3418461 -214618697 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 3418544 3418701 -214618457 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 3418859 3419366 -214617792 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 3419384 3419599 -214617559 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 3420027 3420313 -214616845 - AluSx SINE Alu -18 294 1 1697 195 7 0 chr3 3421061 3421353 -214615805 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr3 3421354 3421378 -214615780 + (CA)n Simple_repeat Simple_repeat 2 25 0 680 149 79 0 chr3 3421474 3421588 -214615570 - FLAM_C SINE Alu -19 124 2 201 386 30 0 chr3 3421702 3421803 -214615355 + L2 LINE L2 3169 3272 0 257 267 150 0 chr3 3421868 3421988 -214615170 + L1ME LINE L1 5705 5842 -279 2520 87 0 0 chr3 3422050 3422359 -214614799 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 3422520 3422542 -214614616 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 3423274 3423304 -214613854 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 3424320 3424645 -214612513 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 3424681 3424844 -214612314 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 3425244 3425545 -214611613 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 3426672 3426768 -214610390 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 3427147 3427443 -214609715 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 3428069 3428366 -214608792 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 3428366 3428559 -214608599 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 3428810 3428928 -214608230 + L2 LINE L2 3170 3303 -10 2349 98 7 0 chr3 3429198 3429505 -214607653 + AluSp SINE Alu 1 309 -4 537 188 240 19 chr3 3429765 3429919 -214607239 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 3430097 3430130 -214607028 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 3430168 3430311 -214606847 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 3430461 3430528 -214606630 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 3430797 3431102 -214606056 - AluSg SINE Alu -5 305 1 449 222 104 22 chr3 3433850 3433985 -214603173 - L2 LINE L2 -5 3267 3122 2119 90 54 0 chr3 3434352 3434630 -214602528 + AluSq SINE Alu 1 293 -20 24 96 0 0 chr3 3436374 3436447 -214600711 + AT_rich Low_complexity Low_complexity 1 73 0 521 275 6 25 chr3 3437182 3437342 -214599816 - MIR SINE MIR -72 190 34 322 295 25 0 chr3 3437937 3438059 -214599099 + L2 LINE L2 2199 2323 -991 872 225 69 23 chr3 3438069 3438331 -214598827 - L1MB4 LINE L1 0 6180 5907 303 250 70 20 chr3 3439496 3439596 -214597562 + MIR SINE MIR 81 185 -77 2038 140 7 0 chr3 3439605 3439905 -214597253 + AluSx SINE Alu 1 302 -10 245 246 33 0 chr3 3440438 3440499 -214596659 - MER5B DNA MER1_type 0 178 116 702 191 112 27 chr3 3440536 3440724 -214596434 + MER20 DNA MER1_type 16 219 0 1135 178 28 0 chr3 3440848 3441028 -214596130 - MER5A DNA MER1_type -2 187 3 1687 112 31 5 chr3 3441767 3441991 -214595167 + MER30 DNA MER1_type 1 230 0 613 255 28 0 chr3 3442009 3442154 -214595004 - MIR SINE MIR -87 175 27 181 286 71 51 chr3 3442145 3442156 -214595002 + MIR SINE MIR 27 36 -226 * 2360 99 3 0 chr3 3442156 3442458 -214594700 - AluSq SINE Alu -10 303 1 181 286 71 51 chr3 3442458 3442544 -214594614 + MIR SINE MIR 36 126 -136 620 248 62 6 chr3 3442578 3442739 -214594419 + Charlie8 DNA MER1_type 11 180 -2237 540 208 53 52 chr3 3442740 3442916 -214594242 + MSTC LTR MaLR 1 180 -185 277 126 24 0 chr3 3442915 3442976 -214594182 + MSTB2 LTR MaLR 308 431 -26 * 298 280 156 53 chr3 3443141 3443366 -214593792 + L2 LINE L2 2916 3163 -150 606 252 63 15 chr3 3443387 3443557 -214593601 + MIR SINE MIR 13 196 -66 2223 120 0 0 chr3 3443557 3443858 -214593300 + AluSx SINE Alu 1 301 -11 606 252 63 15 chr3 3443858 3443893 -214593265 + MIR SINE MIR 196 228 -34 278 149 21 0 chr3 3443930 3443977 -214593181 + Charlie8 DNA MER1_type 1375 1422 -995 357 62 0 0 chr3 3444373 3444421 -214592737 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr3 3444420 3444446 -214592712 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1225 222 108 7 chr3 3444456 3444753 -214592405 + MER2 DNA MER2_type 6 332 -13 25759 64 4 9 chr3 3444983 3448304 -214588854 - L1P LINE L1 -2831 3315 11 609 239 119 26 chr3 3448323 3448661 -214588497 + MLT1G LTR MaLR 153 588 -2 1775 152 20 10 chr3 3450962 3451258 -214585900 - AluJo SINE Alu -13 299 1 270 185 174 0 chr3 3451272 3451364 -214585794 - MER113 DNA MER1_type? -410 111 4 293 347 41 0 chr3 3451367 3451488 -214585670 - MIR3 SINE MIR -52 156 31 2240 91 3 3 chr3 3451995 3452282 -214584876 - AluSp SINE Alu -15 298 12 227 261 54 43 chr3 3454607 3454699 -214582459 + MIR SINE MIR 103 195 -67 1824 150 0 43 chr3 3456131 3456457 -214580701 - AluJb SINE Alu 0 312 1 180 200 0 60 chr3 3456475 3456525 -214580633 - MIR SINE MIR -106 156 110 1821 147 14 7 chr3 3457082 3457368 -214579790 + AluJo SINE Alu 1 288 -24 24 32 0 0 chr3 3457541 3457572 -214579586 + AT_rich Low_complexity Low_complexity 1 31 0 1968 144 7 0 chr3 3457612 3457911 -214579247 - AluJb SINE Alu -11 301 1 418 353 39 7 chr3 3458416 3458569 -214578589 - L2 LINE L2 0 3272 3115 282 311 49 8 chr3 3458617 3458739 -214578419 - L2 LINE L2 0 3313 3187 963 233 69 25 chr3 3463043 3463288 -214573870 - MIR SINE MIR 0 262 7 199 331 67 18 chr3 3463431 3463595 -214573563 + MIR SINE MIR 23 192 -67 216 285 89 32 chr3 3463818 3463885 -214573273 + MIR SINE MIR 132 194 -68 1420 186 0 36 chr3 3463885 3464133 -214573025 + MER8 DNA MER2_type 1 239 0 216 285 89 32 chr3 3464133 3464188 -214572970 + MIR SINE MIR 194 261 -1 825 211 35 30 chr3 3465545 3465744 -214571414 + MER105 DNA DNA 1 200 -4 225 327 71 9 chr3 3466326 3466460 -214570698 + MIR SINE MIR 37 177 -70 335 217 105 28 chr3 3467251 3467394 -214569764 - L1ME4a LINE L1 -1 6120 5967 23 33 0 0 chr3 3467588 3467618 -214569540 + AT_rich Low_complexity Low_complexity 1 30 0 206 238 16 0 chr3 3467931 3467994 -214569164 + (CAAAC)n Simple_repeat Simple_repeat 1 64 0 207 0 0 0 chr3 3468531 3468554 -214568604 + (T)n Simple_repeat Simple_repeat 1 23 0 423 168 140 19 chr3 3468900 3469007 -214568151 - MIR SINE MIR -40 222 103 1379 186 50 47 chr3 3470518 3470674 -214566484 - AluJo SINE Alu -10 302 143 1562 186 0 62 chr3 3470674 3470997 -214566161 - AluSx SINE Alu -9 303 1 1379 186 50 47 chr3 3470997 3471141 -214566017 - AluJo SINE Alu -169 143 1 1554 292 179 16 chr3 3471565 3472371 -214564787 + L3 LINE CR1 552 1488 -89 465 220 60 22 chr3 3472953 3473097 -214564061 - L1MD3 LINE L1 -1 8040 7880 246 111 0 0 chr3 3473102 3473147 -214564011 + LTR66 LTR ERVL 395 439 -171 239 109 0 0 chr3 3473141 3473187 -214563971 - LTR66 LTR ERVL -171 439 394 * 252 200 0 0 chr3 3473206 3473266 -214563892 + (CA)n Simple_repeat Simple_repeat 1 60 0 2703 231 46 34 chr3 3473274 3473344 -214563814 - L1MC4 LINE L1 -682 7360 7292 1814 153 43 10 chr3 3473344 3473645 -214563513 + AluSx SINE Alu 1 311 -1 2703 231 46 34 chr3 3473645 3474288 -214562870 - L1MC4 LINE L1 -750 7292 6638 289 206 29 49 chr3 3475076 3475178 -214561980 - L1MEd LINE L1 -5354 765 666 360 0 0 0 chr3 3478851 3478891 -214558267 + (TG)n Simple_repeat Simple_repeat 2 41 0 317 320 28 56 chr3 3479631 3479809 -214557349 + MIR SINE MIR 46 218 -44 2224 118 3 0 chr3 3479948 3480252 -214556906 - AluSq SINE Alu -8 305 1 1562 127 0 5 chr3 3480274 3480495 -214556663 + AluSg/x SINE Alu 87 306 -6 218 260 0 0 chr3 3480515 3480565 -214556593 + MIR SINE MIR 213 262 0 291 224 0 15 chr3 3480588 3480655 -214556503 + L2 LINE L2 2750 2815 -499 336 343 0 10 chr3 3480817 3480916 -214556242 + MIR SINE MIR 13 110 -152 306 153 0 0 chr3 3481002 3481061 -214556097 + (CAT)n Simple_repeat Simple_repeat 2 60 0 1517 278 157 41 chr3 3482467 3483206 -214553952 + HAL1 LINE L1 85 949 -1558 2579 34 0 0 chr3 3483206 3483501 -214553657 + AluY SINE Alu 1 295 -16 1517 278 157 41 chr3 3483501 3483664 -214553494 + HAL1 LINE L1 949 1092 -1415 490 88 25 38 chr3 3484108 3484188 -214552970 - MADE1 DNA Mariner 0 80 2 196 301 68 45 chr3 3486119 3486252 -214550906 - MIR SINE MIR -118 144 9 239 286 164 35 chr3 3486579 3486750 -214550408 - L2 LINE L2 -1 3312 3120 2226 62 42 10 chr3 3486763 3487051 -214550107 + AluY SINE Alu 1 297 -14 1496 166 16 55 chr3 3487087 3487394 -214549764 + MLT1A1 LTR MaLR 13 307 -58 1727 190 11 39 chr3 3487402 3487793 -214549365 + MLT-int LTR MaLR 316 709 -662 351 179 15 15 chr3 3487900 3487967 -214549191 + MLT-int LTR MaLR 676 742 -993 269 266 273 7 chr3 3488262 3488416 -214548742 - MIR SINE MIR -65 197 3 2668 136 4 87 chr3 3488824 3488879 -214548279 - L1MB7 LINE L1 -19 6165 6107 1956 142 0 32 chr3 3488879 3489188 -214547970 + AluJb SINE Alu 1 299 -13 2668 136 4 87 chr3 3489188 3489216 -214547942 - L1MB7 LINE L1 -77 6107 6078 309 26 0 0 chr3 3489216 3489254 -214547904 + (T)n Simple_repeat Simple_repeat 1 38 0 2668 136 4 87 chr3 3489254 3489662 -214547496 - L1MB7 LINE L1 -106 6078 5680 274 277 36 24 chr3 3490232 3490315 -214546843 - MIR3 SINE MIR -3 205 122 209 171 0 0 chr3 3490480 3490515 -214546643 + CT-rich Low_complexity Low_complexity 2 36 0 198 103 0 0 chr3 3492043 3492072 -214545086 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 192 354 21 42 chr3 3492262 3492358 -214544800 - L3 LINE CR1 -20 1557 1464 760 298 188 51 chr3 3492391 3493115 -214544043 - L3 LINE CR1 -184 1393 543 1129 158 50 180 chr3 3493115 3493532 -214543626 + MLT1A1 LTR MaLR 3 365 0 760 298 188 51 chr3 3493532 3493628 -214543530 - L3 LINE CR1 -1034 543 461 247 364 19 31 chr3 3494206 3494368 -214542790 + L2 LINE L2 2897 3056 -216 575 310 6 18 chr3 3494444 3494615 -214542543 - MER5A DNA MER1_type -5 184 16 202 232 24 24 chr3 3496880 3496962 -214540196 + (TTATA)n Simple_repeat Simple_repeat 2 83 0 291 324 94 25 chr3 3496980 3497292 -214539866 - L1ME LINE L1 -392 5729 5395 261 83 0 0 chr3 3498313 3498349 -214538809 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr3 3498571 3498599 -214538559 + AT_rich Low_complexity Low_complexity 1 28 0 369 161 49 0 chr3 3499251 3499332 -214537826 - MER58 DNA MER1_type -16 2404 2320 2260 95 0 7 chr3 3499347 3499643 -214537515 + AluSq SINE Alu 5 298 -15 1113 208 47 7 chr3 3499643 3499912 -214537246 - MER58 DNA MER1_type -61 280 1 335 308 23 39 chr3 3499922 3500052 -214537106 - MER5A DNA MER1_type -5 184 57 331 224 112 43 chr3 3501853 3502014 -214535144 + MER113 DNA MER1_type? 4 175 -346 21 0 0 0 chr3 3502047 3502068 -214535090 + AT_rich Low_complexity Low_complexity 1 21 0 193 284 60 0 chr3 3502690 3502757 -214534401 - MIR SINE MIR -26 236 166 515 271 202 10 chr3 3502782 3502985 -214534173 - MIR SINE MIR -10 252 11 254 240 280 27 chr3 3503589 3503739 -214533419 + MIR3 SINE MIR 10 197 -11 786 313 75 30 chr3 3505469 3506145 -214531013 + L2 LINE L2 2601 3306 -7 341 398 29 5 chr3 3506486 3506692 -214530466 + MIR SINE MIR 28 238 -24 2097 146 0 0 chr3 3506728 3507030 -214530128 + AluJb SINE Alu 1 302 -10 233 351 26 0 chr3 3508313 3508390 -214528768 + MIR SINE MIR 28 106 -156 854 198 99 15 chr3 3508404 3508606 -214528552 - MER20 DNA MER1_type 0 219 1 23 68 0 0 chr3 3508850 3508894 -214528264 + AT_rich Low_complexity Low_complexity 1 44 0 906 241 97 28 chr3 3509160 3509376 -214527782 + MIR SINE MIR 2 232 -30 2614 48 3 0 chr3 3509698 3510007 -214527151 - AluY SINE Alu 0 311 2 694 291 135 35 chr3 3510202 3510549 -214526609 + MLT1K LTR MaLR 134 515 -73 1779 156 28 3 chr3 3510890 3511179 -214525979 - AluSx SINE Alu -16 296 1 3148 135 23 72 chr3 3511414 3511478 -214525680 + LTR9 LTR ERV1 1 67 -545 2512 50 0 0 chr3 3511478 3511779 -214525379 - AluY SINE Alu -10 301 1 3148 135 23 72 chr3 3511779 3512357 -214524801 + LTR9 LTR ERV1 67 612 0 336 333 8 0 chr3 3513360 3513483 -214523675 - Tigger8 DNA MER2_type -13 653 530 2619 153 109 27 chr3 3513510 3514071 -214523087 + LTR36 LTR ERV1 1 607 -4 481 315 35 0 chr3 3514353 3514585 -214522573 + MER102b DNA MER1_type 102 341 0 1555 205 58 54 chr3 3514749 3515212 -214521946 - MLT1C LTR MaLR -1 466 2 534 325 73 17 chr3 3517392 3517626 -214519532 - MIR SINE MIR -14 248 2 454 273 66 50 chr3 3518353 3518551 -214518607 + MIR SINE MIR 41 241 -21 777 266 92 17 chr3 3518658 3519015 -214518143 + MER113 DNA MER1_type? 136 519 -2 243 175 0 0 chr3 3520584 3520641 -214516517 + (TG)n Simple_repeat Simple_repeat 1 57 0 304 148 49 37 chr3 3521582 3521631 -214515527 + L1MC4 LINE L1 6616 6663 -1379 1695 113 118 136 chr3 3521631 3521855 -214515303 + Tigger2a DNA MER2_type 1 228 -2480 2175 117 3 0 chr3 3521855 3522154 -214515004 + AluSx SINE Alu 1 300 -12 1695 113 118 136 chr3 3522154 3522196 -214514962 + Tigger2a DNA MER2_type 228 269 -2439 1779 159 10 17 chr3 3522196 3522492 -214514666 + AluJb SINE Alu 1 294 -18 1695 113 118 136 chr3 3522492 3522551 -214514607 + Tigger2a DNA MER2_type 269 328 -2380 1596 183 7 18 chr3 3522551 3522830 -214514328 + AluJo SINE Alu 7 282 -30 233 29 0 29 chr3 3522836 3522871 -214514287 + (CAA)n Simple_repeat Simple_repeat 2 35 0 1695 113 118 136 chr3 3522871 3522978 -214514180 + Tigger2a DNA MER2_type 333 434 0 304 148 49 37 chr3 3522978 3523009 -214514149 + L1MC4 LINE L1 6663 6697 -1345 212 313 0 38 chr3 3523239 3523319 -214513839 - L2 LINE L2 -7 3265 3189 966 280 56 41 chr3 3523352 3523401 -214513757 + MLT1K LTR MaLR 3 50 -538 216 0 0 0 chr3 3523401 3523425 -214513733 + (TAA)n Simple_repeat Simple_repeat 2 25 0 966 280 56 41 chr3 3523425 3523768 -214513390 + MLT1K LTR MaLR 50 401 -187 444 174 0 83 chr3 3523795 3523850 -214513308 + MLT1K LTR MaLR 478 519 -69 527 185 0 22 chr3 3523850 3523985 -214513173 + L1MB8 LINE L1 6046 6177 -1 444 174 0 83 chr3 3523985 3524050 -214513108 + MLT1K LTR MaLR 519 588 0 228 67 0 0 chr3 3524289 3524319 -214512839 + (TGG)n Simple_repeat Simple_repeat 1 30 0 4073 113 5 70 chr3 3525261 3525999 -214511159 + LTR8 LTR ERV1 2 691 0 2099 177 37 0 chr3 3526165 3526567 -214510591 - L1MA3 LINE L1 -2 6303 5887 228 350 133 21 chr3 3527155 3527389 -214509769 - L2 LINE L2 -450 2864 2605 842 203 35 5 chr3 3527393 3527590 -214509568 - MER3 DNA MER1_type -4 205 3 213 296 159 0 chr3 3527945 3528033 -214509125 + L2 LINE L2 3212 3313 0 187 367 17 0 chr3 3528108 3528168 -214508990 + MIR SINE MIR 78 138 -70 418 290 168 0 chr3 3528298 3528453 -214508705 + MER5A DNA MER1_type 9 189 0 508 254 56 0 chr3 3528867 3528993 -214508165 - L2 LINE L2 -3 3310 3178 1006 277 80 58 chr3 3529018 3529516 -214507642 - L2 LINE L2 0 3313 2805 642 309 57 0 chr3 3529812 3530006 -214507152 + L3 LINE CR1 914 1118 -459 255 284 20 20 chr3 3530436 3530538 -214506620 + LTR67 LTR ERVL 449 550 -7 307 202 46 46 chr3 3531527 3531636 -214505522 - MLT1H LTR MaLR 0 549 441 2661 33 0 0 chr3 3531689 3531990 -214505168 - AluY SINE Alu -9 302 2 27 0 0 0 chr3 3533358 3533385 -214503773 + AT_rich Low_complexity Low_complexity 1 27 0 3195 167 13 0 chr3 3534951 3535503 -214501655 + L1PA16 LINE L1 5607 6165 -1 3959 153 27 6 chr3 3535503 3536321 -214500837 + L1MA9 LINE L1 5356 6290 -22 3319 172 30 6 chr3 3536466 3537123 -214500035 - L1MB3 LINE L1 -2 6181 5509 595 339 68 24 chr3 3537165 3537534 -214499624 + MLT1K LTR MaLR 24 408 -180 212 193 70 35 chr3 3539020 3539077 -214498081 + L2 LINE L2 3255 3313 0 811 325 83 32 chr3 3539188 3539715 -214497443 - L2 LINE L2 -938 2376 1823 338 367 80 15 chr3 3539846 3540045 -214497113 + MIR SINE MIR 32 243 -19 180 194 194 0 chr3 3540554 3540590 -214496568 - MIR SINE MIR -102 106 64 2023 130 14 43 chr3 3541399 3541746 -214495412 + MER1B DNA MER1_type 1 337 0 519 237 101 0 chr3 3541821 3541960 -214495198 - MIR SINE MIR -38 224 72 437 319 14 28 chr3 3541958 3542102 -214495056 - L2 LINE L2 -4 3309 3168 * 658 313 70 10 chr3 3543653 3543984 -214493174 - L2 LINE L2 -218 3095 2740 599 185 110 153 chr3 3544063 3544409 -214492749 - MER46C DNA MER2_type -6 332 2 537 308 49 57 chr3 3545649 3545933 -214491225 - Charlie8 DNA MER1_type -1964 453 171 1875 170 3 10 chr3 3545933 3546245 -214490913 + AluJo SINE Alu 1 310 -2 537 308 49 57 chr3 3546245 3546346 -214490812 - Charlie8 DNA MER1_type -2246 171 71 187 130 22 22 chr3 3547297 3547343 -214489815 + CT-rich Low_complexity Low_complexity 4 49 0 684 333 40 17 chr3 3547842 3548193 -214488965 + LTR16A LTR ERVL 86 444 -6 1848 110 0 0 chr3 3549062 3549307 -214487851 + AluSc SINE Alu 46 290 -19 279 71 0 0 chr3 3549307 3549349 -214487809 + (TA)n Simple_repeat Simple_repeat 2 43 0 276 194 250 8 chr3 3550096 3550220 -214486938 - MER103 DNA DNA -11 155 2 368 277 69 31 chr3 3550771 3550901 -214486257 - L2 LINE L2 -1 3271 3137 634 314 206 31 chr3 3551182 3551768 -214485390 - L2 LINE L2 -589 2725 2037 528 249 76 15 chr3 3552930 3553127 -214484031 + MER63A DNA MER1_type 2 210 0 436 295 18 48 chr3 3554406 3554572 -214482586 + MIR SINE MIR 36 196 -66 1434 208 20 35 chr3 3555895 3556241 -214480917 - MER58B DNA MER1_type 0 341 1 369 362 22 26 chr3 3556244 3556473 -214480685 - L2 LINE L2 -342 2972 2745 343 344 38 13 chr3 3556477 3556634 -214480524 - MER5A DNA MER1_type -5 184 24 199 260 19 115 chr3 3557440 3557544 -214479614 - L2 LINE L2 -656 2658 2565 513 126 54 18 chr3 3559344 3559455 -214477703 + MER4C LTR ERV1 2 116 -349 458 231 41 123 chr3 3559513 3559817 -214477341 + MER4C LTR ERV1 125 232 -233 2319 61 0 0 chr3 3559817 3560138 -214477020 + AluY SINE Alu 1 321 0 458 231 41 123 chr3 3560138 3560347 -214476811 + MER4C LTR ERV1 232 457 -8 914 173 62 6 chr3 3560353 3560532 -214476626 + MLT1D LTR MaLR 257 445 -60 2521 59 0 3 chr3 3560537 3560843 -214476315 - AluY SINE Alu -6 305 1 302 256 84 116 chr3 3560920 3560991 -214476167 - L2 LINE L2 -94 3219 3147 1587 195 30 10 chr3 3560991 3561117 -214476041 + AluJo SINE Alu 1 123 -189 213 39 0 0 chr3 3561117 3561143 -214476015 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 1587 195 30 10 chr3 3561143 3561314 -214475844 + AluJo SINE Alu 123 304 -8 302 256 84 116 chr3 3561314 3561457 -214475701 - L2 LINE L2 -166 3147 3012 354 347 68 46 chr3 3561468 3561972 -214475186 + L2 LINE L2 2301 2815 -499 518 277 40 0 chr3 3563040 3563188 -214473970 + MLT1K LTR MaLR 23 176 -412 695 261 43 34 chr3 3563233 3563467 -214473691 + MLT1K LTR MaLR 342 577 -11 473 241 135 7 chr3 3564749 3564890 -214472268 + Charlie8 DNA MER1_type 88 246 -2171 968 229 129 25 chr3 3565369 3565732 -214471426 + MLT1I LTR MaLR 5 405 -4 373 305 58 29 chr3 3566723 3566897 -214470261 + L3 LINE CR1 1209 1387 -190 2040 110 28 3 chr3 3567375 3567666 -214469492 - AluSc SINE Alu -10 299 2 320 215 168 9 chr3 3567773 3567880 -214469278 - L1ME3 LINE L1 -8 6154 6031 208 258 186 31 chr3 3568103 3568200 -214468958 + L2 LINE L2 3175 3286 -27 2257 103 7 0 chr3 3570030 3570332 -214466826 + AluSx SINE Alu 1 304 -8 1663 188 11 7 chr3 3571604 3571891 -214465267 + AluJo SINE Alu 1 288 -24 268 250 0 98 chr3 3572151 3572243 -214464915 + MIR SINE MIR 164 246 -16 645 231 20 138 chr3 3572360 3572707 -214464451 - L1MD1 LINE L1 -10 6232 5927 300 328 61 15 chr3 3573405 3573536 -214463622 + L2 LINE L2 3176 3312 -1 2214 114 3 29 chr3 3573563 3573879 -214463279 - AluSx SINE Alu -4 308 1 822 174 28 90 chr3 3574225 3574437 -214462721 + MER63A DNA MER1_type 4 202 -8 500 290 168 0 chr3 3575378 3575533 -214461625 + MER5A DNA MER1_type 9 189 0 5096 66 21 27 chr3 3575585 3576745 -214460413 + SVA Other Other 2 1386 0 2436 186 58 9 chr3 3576753 3577292 -214459866 - L1MB2 LINE L1 -16 6155 5591 876 131 11 60 chr3 3577308 3577491 -214459667 + L1 LINE L1 4026 4199 -1947 * 5210 276 41 36 chr3 3577489 3577574 -214459584 - L1 LINE L1 -2129 3841 3758 2019 117 38 0 chr3 3577574 3577865 -214459293 + AluSx SINE Alu 1 302 -10 5210 276 41 36 chr3 3577865 3579760 -214457398 - L1 LINE L1 -2212 3758 1831 2194 126 0 7 chr3 3579760 3580070 -214457088 - AluSx SINE Alu -4 308 1 5210 276 41 36 chr3 3580070 3581488 -214455670 - L1 LINE L1 -4139 1831 421 554 292 118 55 chr3 3581793 3582122 -214455036 - L1 LINE L1 -5541 350 1 875 225 16 0 chr3 3583041 3583223 -214453935 + MER5A DNA MER1_type 2 186 -3 552 256 35 12 chr3 3583269 3583441 -214453717 - MER5B DNA MER1_type 0 178 3 710 264 50 14 chr3 3584320 3584540 -214452618 + LTR16A1 LTR ERVL 208 435 -22 2167 125 7 0 chr3 3585354 3585649 -214451509 - AluSx SINE Alu -15 297 1 2256 104 0 19 chr3 3586067 3586384 -214450774 - AluSq SINE Alu -2 311 1 27 0 0 0 chr3 3586440 3586467 -214450691 + AT_rich Low_complexity Low_complexity 1 27 0 2275 181 36 23 chr3 3586468 3586997 -214450161 - L1MA8 LINE L1 -4 6287 5752 1612 192 13 55 chr3 3587315 3587695 -214449463 + MLT1A1 LTR MaLR 1 364 -1 456 327 67 73 chr3 3589041 3589506 -214447652 - L2 LINE L2 -3 3269 2808 2040 201 57 9 chr3 3590885 3591324 -214445834 + LOR1b LTR ERV1 2 461 0 518 278 68 68 chr3 3592623 3593005 -214444153 + MLT1J1 LTR MaLR 65 446 0 1854 131 95 24 chr3 3595083 3595420 -214441738 + MER46B DNA MER2_type 1 236 0 208 215 0 46 chr3 3596175 3596240 -214440918 + L2 LINE L2 2201 2262 -1052 2358 76 3 0 chr3 3596885 3597187 -214439971 - AluY SINE Alu -8 303 1 1786 135 90 0 chr3 3597664 3597931 -214439227 + AluSx SINE Alu 1 291 -21 198 285 180 47 chr3 3598373 3598545 -214438613 - MIR SINE MIR -47 215 21 1515 189 40 15 chr3 3598678 3599079 -214438079 + Charlie1 DNA MER1_type 2343 2753 -8 341 336 79 21 chr3 3600009 3600149 -214437009 + MIR3 SINE MIR 58 205 -3 793 189 5 121 chr3 3600590 3600796 -214436362 + MER5A DNA MER1_type 7 188 -1 271 307 45 11 chr3 3600805 3600893 -214436265 + MIR SINE MIR 53 143 -119 1149 297 88 26 chr3 3600910 3601471 -214435687 + L2 LINE L2 2502 3127 -186 1734 128 75 11 chr3 3601471 3601758 -214435400 - AluSx SINE Alu 0 304 1 1149 297 88 26 chr3 3601758 3601958 -214435200 + L2 LINE L2 3127 3313 0 281 26 0 26 chr3 3607209 3607248 -214429910 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 345 25 49 chr3 3607966 3608169 -214428989 + MIR SINE MIR 21 218 -44 2250 121 0 0 chr3 3608308 3608613 -214428545 - AluSp SINE Alu -8 305 1 848 202 91 0 chr3 3608616 3608814 -214428344 - L1MD2 LINE L1 -200 6159 5944 279 245 96 11 chr3 3608814 3608908 -214428250 + MER69 DNA AcHobo 2425 2526 0 2523 53 0 22 chr3 3609190 3609508 -214427650 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 3609690 3609832 -214427326 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 3609898 3609920 -214427238 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 3609955 3610084 -214427074 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 3610155 3610417 -214426741 + AluSc SINE Alu 5 292 -17 280 217 0 17 chr3 3610771 3610831 -214426327 + MER91 DNA MER1_type 81 139 -1 2507 52 3 0 chr3 3663265 3663574 -214373584 + AluY SINE Alu 1 310 -1 186 0 28 56 chr3 3663742 3663778 -214373380 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 415 344 56 25 chr3 3663920 3664307 -214372851 - L2 LINE L2 -209 3104 2612 * 1036 328 142 39 chr3 3664280 3665293 -214371865 + L3 LINE CR1 394 1511 -66 439 294 79 99 chr3 3665652 3666186 -214370972 - L2 LINE L2 -457 2857 2335 407 303 0 0 chr3 3666191 3666310 -214370848 + MER94 DNA DNA 16 134 0 427 279 146 84 chr3 3666325 3666921 -214370237 - L2 LINE L2 -1020 2294 1662 465 354 40 5 chr3 3667272 3667470 -214369688 - MIR SINE MIR -27 235 31 23 33 0 0 chr3 3669268 3669298 -214367860 + AT_rich Low_complexity Low_complexity 1 30 0 271 377 39 8 chr3 3670675 3670805 -214366353 + MIR3 SINE MIR 2 135 -73 901 220 10 0 chr3 3670811 3671011 -214366147 + MER3 DNA MER1_type 3 204 -5 1555 192 44 49 chr3 3671679 3672085 -214365073 - MER21B LTR ERV1 -57 806 403 337 298 0 19 chr3 3673309 3673413 -214363745 + MIR SINE MIR 48 149 -113 31 0 0 0 chr3 3673756 3673787 -214363371 + AT_rich Low_complexity Low_complexity 1 31 0 2335 66 3 7 chr3 3673832 3674136 -214363022 - AluY SINE Alu -4 307 5 384 278 61 0 chr3 3675057 3675172 -214361986 - MIR SINE MIR -59 203 82 2171 103 0 0 chr3 3676324 3676636 -214360522 + AluSg SINE Alu 1 312 0 559 200 42 18 chr3 3677103 3677268 -214359890 - MLT1A1 LTR MaLR -196 169 1 225 94 0 0 chr3 3678444 3678476 -214358682 + (CCA)n Simple_repeat Simple_repeat 1 32 0 183 80 0 0 chr3 3678696 3678721 -214358437 + (T)n Simple_repeat Simple_repeat 1 25 0 1716 167 0 33 chr3 3679103 3679408 -214357750 + AluJb SINE Alu 7 301 -11 674 306 51 4 chr3 3682955 3683190 -214353968 + MIR SINE MIR 9 254 -8 220 0 86 0 chr3 3683307 3683342 -214353816 + A-rich Low_complexity Low_complexity 2 39 0 1995 66 44 0 chr3 3683618 3683890 -214353268 - L1PA13 LINE L1 -19 6144 5861 2153 110 3 7 chr3 3683926 3684225 -214352933 + AluSx SINE Alu 1 298 -14 978 82 0 15 chr3 3684279 3684439 -214352719 + AluY SINE Alu 150 307 0 1044 113 0 0 chr3 3684539 3684681 -214352477 - THE1C LTR MaLR -233 142 1 423 224 96 8 chr3 3684682 3684807 -214352351 + MER103 DNA DNA 31 166 0 191 235 123 12 chr3 3685079 3685160 -214351998 + MIR SINE MIR 96 185 -77 28 53 0 40 chr3 3685371 3685446 -214351712 + AT_rich Low_complexity Low_complexity 1 72 0 23 68 0 0 chr3 3685773 3685817 -214351341 + AT_rich Low_complexity Low_complexity 1 44 0 2695 297 100 32 chr3 3686561 3686974 -214350184 - L2 LINE L2 -160 3153 2769 2148 154 83 8 chr3 3686974 3687371 -214349787 - MSTA LTR MaLR 0 428 2 2695 297 100 32 chr3 3687371 3688390 -214348768 - L2 LINE L2 -544 2769 1635 210 343 126 40 chr3 3688496 3688694 -214348464 + L2 LINE L2 2591 2805 -509 235 311 14 14 chr3 3689895 3689969 -214347189 - MIR SINE MIR -116 92 19 2490 46 7 0 chr3 3690034 3690341 -214346817 - AluY SINE Alu -2 309 1 221 116 0 23 chr3 3690355 3690398 -214346760 + (GGAGAA)n Simple_repeat Simple_repeat 3 44 0 1874 129 46 16 chr3 3693286 3693589 -214343569 - AluSx SINE Alu 0 312 1 568 234 22 7 chr3 3694437 3694574 -214342584 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3695657 3695726 -214341432 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3695727 3695808 -214341350 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3695888 3695952 -214341206 + MIR3 SINE MIR 98 161 -47 449 248 47 16 chr3 3696591 3696720 -214340438 - MER94 DNA DNA -1 133 1 2411 129 89 65 chr3 3697738 3697791 -214339367 + MER34 LTR ERV1 1 51 -491 1696 164 0 14 chr3 3697791 3698097 -214339061 - AluJo SINE Alu 0 302 1 2411 129 89 65 chr3 3698097 3698568 -214338590 + MER34 LTR ERV1 51 539 -3 349 293 67 7 chr3 3698611 3698761 -214338397 - L1ME3A LINE L1 -233 5920 5762 645 285 65 19 chr3 3698805 3699499 -214337659 - L1ME3A LINE L1 -536 5609 4884 522 278 109 24 chr3 3699612 3700259 -214336899 - L1MEd LINE L1 -4596 1714 971 314 363 64 58 chr3 3700334 3700711 -214336447 - L1MEd LINE L1 -5737 382 4 1990 146 0 0 chr3 3700791 3701085 -214336073 + AluSx SINE Alu 1 294 -18 565 196 0 0 chr3 3701088 3701180 -214335978 + AluS SINE Alu 1 92 -220 1500 120 43 0 chr3 3701281 3701529 -214335629 + AluSg/x SINE Alu 66 322 0 2288 91 3 0 chr3 3701539 3701824 -214335334 + AluSp SINE Alu 3 288 -25 226 0 59 0 chr3 3701833 3701867 -214335291 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 200 219 0 0 chr3 3702627 3702668 -214334490 - MER5C DNA MER1_type -6 318 278 323 224 37 112 chr3 3702813 3702947 -214334211 - MER5C DNA MER1_type -200 124 1 218 324 63 63 chr3 3703176 3703287 -214333871 + L2 LINE L2 3141 3251 -21 270 300 129 36 chr3 3703762 3703902 -214333256 + MIR3 SINE MIR 6 158 -50 1537 177 7 14 chr3 3703938 3704250 -214332908 + AluJo SINE Alu 1 310 0 2183 113 0 7 chr3 3704466 3704767 -214332391 + AluSg SINE Alu 1 299 -11 435 281 117 18 chr3 3705899 3706070 -214331088 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr3 3707159 3707182 -214329976 + AT_rich Low_complexity Low_complexity 1 23 0 1712 122 90 41 chr3 3707859 3708202 -214328956 + MER46B DNA MER2_type 1 235 -1 305 279 108 18 chr3 3708223 3708334 -214328824 + MER5A DNA MER1_type 55 175 -14 1266 122 0 5 chr3 3708334 3708522 -214328636 - AluSg/x SINE Alu -10 302 116 2330 84 0 7 chr3 3708890 3709186 -214327972 - AluSq SINE Alu -19 294 1 783 186 0 0 chr3 3709217 3709341 -214327817 + FLAM_A SINE Alu 1 124 -9 797 258 18 35 chr3 3709505 3709734 -214327424 - MIR SINE MIR -6 256 32 297 0 0 0 chr3 3709980 3710013 -214327145 + (TG)n Simple_repeat Simple_repeat 1 33 0 495 286 97 49 chr3 3710073 3710219 -214326939 - L1ME2 LINE L1 -233 5931 5793 2279 89 3 7 chr3 3710219 3710523 -214326635 + AluSx SINE Alu 2 304 -8 495 286 97 49 chr3 3710523 3711008 -214326150 - L1ME2 LINE L1 -371 5793 5270 228 306 38 12 chr3 3711111 3711271 -214325887 - L1ME2 LINE L1 -1005 5141 4978 2212 226 72 14 chr3 3711314 3711886 -214325272 + MER82 DNA MER2_type 1 605 -48 349 307 0 8 chr3 3711952 3712079 -214325079 + (TAA)n Simple_repeat Simple_repeat 3 128 0 942 281 88 38 chr3 3712863 3713460 -214323698 - L2 LINE L2 0 3313 2702 2057 184 17 121 chr3 3713849 3714390 -214322768 + L1PB4 LINE L1 4562 5003 -1143 1678 99 0 5 chr3 3714390 3714613 -214322545 + AluSg/x SINE Alu 71 292 -18 2057 184 17 121 chr3 3714613 3714831 -214322327 + L1PB4 LINE L1 5003 5242 -904 2199 128 8 23 chr3 3714931 3715220 -214321938 + L1PB4 LINE L1 5396 5679 -477 1610 211 0 3 chr3 3715220 3715519 -214321639 + AluJb SINE Alu 1 298 -14 2199 128 8 23 chr3 3715519 3715618 -214321540 + L1PB4 LINE L1 5679 5778 -378 363 23 0 0 chr3 3715620 3715664 -214321494 + (TAGA)n Simple_repeat Simple_repeat 2 45 0 238 167 0 28 chr3 3715665 3715737 -214321421 + (TA)n Simple_repeat Simple_repeat 1 70 0 1899 156 34 6 chr3 3715748 3716106 -214321052 + L1PB4 LINE L1 5789 6156 0 2373 93 3 0 chr3 3716410 3716712 -214320446 - AluSq SINE Alu -8 305 3 1792 174 24 0 chr3 3716739 3717037 -214320121 + AluJo SINE Alu 3 307 -5 2508 56 3 0 chr3 3718211 3718517 -214318641 + AluY SINE Alu 1 307 -4 1449 97 4 18 chr3 3718517 3718744 -214318414 + MER4E LTR ERV1 516 739 -27 1148 224 28 6 chr3 3720163 3720453 -214316705 + MLT1A1 LTR MaLR 50 357 -8 266 322 148 0 chr3 3720472 3720587 -214316571 - MIR3 SINE MIR -31 177 46 698 230 94 88 chr3 3722933 3723051 -214314107 + MLT1D LTR MaLR 8 124 -343 697 58 58 19 chr3 3723051 3723155 -214314003 - L1PA10 LINE L1 -6 6162 6055 698 230 94 88 chr3 3723155 3723514 -214313644 + MLT1D LTR MaLR 124 467 0 1963 152 0 3 chr3 3723596 3723892 -214313266 - AluJb SINE Alu -17 295 1 193 293 106 49 chr3 3724691 3724814 -214312344 + L3b LINE CR1 1424 1553 -30 436 236 89 52 chr3 3725278 3725469 -214311689 + L2 LINE L2 3094 3291 -22 780 306 51 63 chr3 3727333 3727881 -214309277 - L2 LINE L2 -10 3303 2764 1669 97 9 0 chr3 3729471 3729687 -214307471 + AluSq SINE Alu 1 218 -95 2333 102 0 10 chr3 3730215 3730528 -214306630 - AluSg SINE Alu 0 310 1 443 280 26 53 chr3 3730741 3730930 -214306228 + MIR SINE MIR 29 212 -50 225 326 112 0 chr3 3731850 3731948 -214305210 - L2 LINE L2 -8 3264 3156 261 0 0 0 chr3 3732155 3732184 -214304974 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2695 112 2 10 chr3 3732958 3733376 -214303782 - L1PB1 LINE L1 -1 6150 5736 23 54 0 0 chr3 3734120 3734157 -214303001 + AT_rich Low_complexity Low_complexity 1 37 0 652 358 49 0 chr3 3734714 3734957 -214302201 + MIR SINE MIR 2 256 -6 457 332 150 31 chr3 3735203 3735622 -214301536 + L2 LINE L2 2845 3313 0 5594 91 63 13 chr3 3735706 3736467 -214300691 + L1PA13 LINE L1 4631 5353 -810 2352 81 0 13 chr3 3736467 3736774 -214300384 + AluY SINE Alu 1 303 -8 5594 91 63 13 chr3 3736774 3737497 -214299661 + L1PA13 LINE L1 5353 6158 -5 347 338 162 0 chr3 3737606 3737748 -214299410 + L2 LINE L2 3107 3271 -1 315 0 0 0 chr3 3738238 3738273 -214298885 + (CA)n Simple_repeat Simple_repeat 2 36 0 261 325 0 0 chr3 3738341 3738418 -214298740 - MIR SINE MIR -102 160 84 2879 200 32 60 chr3 3739098 3739985 -214297173 + L1MB8 LINE L1 4726 5636 -542 237 77 26 0 chr3 3739985 3740024 -214297134 - Alu SINE Alu -7 301 262 2879 200 32 60 chr3 3740024 3740266 -214296892 + L1MB8 LINE L1 5636 5883 -295 2292 75 34 0 chr3 3740266 3740558 -214296600 + AluSq SINE Alu 1 302 -11 2879 200 32 60 chr3 3740558 3740891 -214296267 + L1MB8 LINE L1 5883 6178 0 1915 120 38 7 chr3 3740903 3741194 -214295964 + AluSx SINE Alu 1 300 -12 1052 226 73 20 chr3 3742758 3743145 -214294013 - MLT1C LTR MaLR -7 460 45 936 135 101 6 chr3 3743169 3743347 -214293811 - MLT1A1 LTR MaLR -1 364 170 370 305 76 8 chr3 3743592 3743723 -214293435 - MIR SINE MIR -115 147 8 281 259 0 0 chr3 3744666 3744720 -214292438 + MIR SINE MIR 206 259 -3 2091 107 45 0 chr3 3744795 3745084 -214292074 + AluSx SINE Alu 1 302 -10 488 297 78 21 chr3 3745092 3745284 -214291874 - MIR SINE MIR -28 234 32 2242 107 3 0 chr3 3745469 3745777 -214291381 - AluSx SINE Alu -3 309 1 1960 205 99 79 chr3 3746321 3747131 -214290027 - LTR1B LTR ERV1 0 826 1 1574 211 109 5 chr3 3747290 3747702 -214289456 + MLT2B1 LTR ERVL 1 455 -65 207 0 0 0 chr3 3747702 3747725 -214289433 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 0 0 0 chr3 3747732 3747757 -214289401 + (TG)n Simple_repeat Simple_repeat 2 26 0 412 271 60 36 chr3 3748041 3748207 -214288951 - MIR SINE MIR -73 189 20 438 284 30 0 chr3 3748353 3748487 -214288671 + MIR SINE MIR 53 190 -72 238 225 42 133 chr3 3749499 3749563 -214287595 + MIR3 SINE MIR 68 118 -90 1587 160 29 59 chr3 3749563 3749869 -214287289 - AluJo SINE Alu -9 303 7 238 225 42 133 chr3 3749869 3749924 -214287234 + MIR3 SINE MIR 118 176 -32 459 0 0 0 chr3 3750355 3750406 -214286752 + (CA)n Simple_repeat Simple_repeat 2 52 0 864 164 102 40 chr3 3750545 3750771 -214286387 + MER4B LTR ERV1 1 240 -370 2394 59 0 3 chr3 3751297 3751602 -214285556 + AluY SINE Alu 2 305 -6 2167 117 0 7 chr3 3751919 3752217 -214284941 - AluSx SINE Alu -16 296 1 2095 92 10 26 chr3 3752336 3752642 -214284516 - AluY SINE Alu -10 301 1 23 0 0 0 chr3 3752866 3752889 -214284269 + AT_rich Low_complexity Low_complexity 1 23 0 290 296 148 7 chr3 3753892 3754034 -214283124 + L2 LINE L2 2920 3081 -191 1813 169 10 3 chr3 3757466 3757762 -214279396 + AluJo SINE Alu 5 302 -10 276 77 0 0 chr3 3758348 3758387 -214278771 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr3 3758386 3758407 -214278751 + (GA)n Simple_repeat Simple_repeat 2 22 0 * 319 196 165 62 chr3 3760221 3760318 -214276840 - MER5B DNA MER1_type -5 173 67 284 253 191 25 chr3 3760414 3760576 -214276582 + MIR SINE MIR 67 255 -7 1620 178 16 48 chr3 3760817 3761006 -214276152 - AluJo SINE Alu -8 304 126 2078 104 14 0 chr3 3761006 3761306 -214275852 + AluSx SINE Alu 1 304 0 1620 178 16 48 chr3 3761306 3761429 -214275729 - AluJo SINE Alu -186 126 1 2194 104 3 7 chr3 3761566 3761855 -214275303 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr3 3761869 3761890 -214275268 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 3762734 3762759 -214274399 + AT_rich Low_complexity Low_complexity 1 25 0 950 110 50 33 chr3 3763124 3763306 -214273852 - L1MA5 LINE L1 -8 6292 6108 2045 119 16 10 chr3 3763309 3763619 -214273539 - AluSx SINE Alu 0 312 1 197 301 12 60 chr3 3763648 3763731 -214273427 + MER5A DNA MER1_type 77 155 -34 576 228 168 0 chr3 3763800 3763949 -214273209 - MER5A DNA MER1_type -7 182 9 349 371 29 11 chr3 3765409 3765584 -214271574 - MIR3 SINE MIR -6 202 25 2261 121 16 0 chr3 3766539 3766845 -214270313 + AluSx SINE Alu 1 311 -1 356 258 139 40 chr3 3767134 3767285 -214269873 + MER21B LTR ERV1 98 263 -600 528 127 0 0 chr3 3767388 3767467 -214269691 - AluSg1 SINE Alu -230 79 1 2089 79 76 7 chr3 3767526 3767817 -214269341 - AluY SINE Alu 0 311 1 847 183 57 73 chr3 3769704 3769950 -214267208 + MER46C DNA MER2_type 80 321 -17 241 189 54 54 chr3 3769997 3770071 -214267087 - L2 LINE L2 -63 3250 3177 1410 162 62 16 chr3 3770094 3770402 -214266756 - L1MC2 LINE L1 -9 6335 6014 831 291 86 35 chr3 3770773 3771178 -214265980 + MLT1K LTR MaLR 162 587 -1 251 268 42 92 chr3 3771684 3771826 -214265332 - MER5A DNA MER1_type -28 161 27 1399 199 8 105 chr3 3773349 3773750 -214263408 + MLT1A1 LTR MaLR 3 364 -1 292 395 9 0 chr3 3773796 3773910 -214263248 - MIR SINE MIR -56 152 38 909 306 77 31 chr3 3774736 3774964 -214262194 - L2 LINE L2 -1 3312 3057 1932 147 58 6 chr3 3774964 3775310 -214261848 - MLT1A1 LTR MaLR -1 364 1 909 306 77 31 chr3 3775310 3775473 -214261685 - L2 LINE L2 -256 3057 2903 216 167 0 0 chr3 3775498 3775534 -214261624 + (CA)n Simple_repeat Simple_repeat 1 36 0 2267 117 3 0 chr3 3775828 3776136 -214261022 + AluSx SINE Alu 1 309 -3 580 246 175 6 chr3 3776167 3776338 -214260820 + MIR SINE MIR 37 236 -26 1101 82 0 0 chr3 3777376 3777511 -214259647 + AluSq/x SINE Alu 1 135 -177 2041 121 28 3 chr3 3777511 3777801 -214259357 + AluSx SINE Alu 1 297 -15 279 266 128 11 chr3 3777886 3777980 -214259178 - L2 LINE L2 0 3313 3209 3354 175 55 48 chr3 3778992 3779437 -214257721 + L1MB7 LINE L1 5208 5649 -535 2587 191 60 15 chr3 3779437 3779975 -214257183 - MER68 LTR ERV1 0 562 1 3354 175 55 48 chr3 3779975 3780447 -214256711 + L1MB7 LINE L1 5649 6130 -54 300 200 0 0 chr3 3780619 3780674 -214256484 + MLT1A1 LTR MaLR 311 365 0 249 320 0 0 chr3 3780674 3780752 -214256406 - MIR SINE MIR -39 223 146 1368 167 0 5 chr3 3780920 3781141 -214256017 + AluJo SINE Alu 86 305 -7 1195 253 50 19 chr3 3781171 3781534 -214255624 + MLT1A2 LTR MaLR 1 374 0 316 337 200 6 chr3 3781546 3781721 -214255437 - MIR SINE MIR -52 210 2 852 199 6 0 chr3 3782199 3782360 -214254798 + FRAM SINE Alu 1 162 -14 333 286 58 94 chr3 3782759 3782983 -214254175 + MIR SINE MIR 32 247 -15 468 317 77 18 chr3 3783076 3783297 -214253861 - MIR SINE MIR -3 259 26 1566 232 50 40 chr3 3783387 3783735 -214253423 + MER39 LTR ERV1 8 351 -356 3505 188 104 23 chr3 3783735 3784532 -214252626 - MER21B LTR ERV1 -1 862 1 1566 232 50 40 chr3 3784532 3784697 -214252461 + MER39 LTR ERV1 351 707 0 469 242 86 86 chr3 3785671 3785940 -214251218 + MER102b DNA MER1_type 70 338 -3 1919 138 47 0 chr3 3787170 3787468 -214249690 - AluSx SINE Alu 0 312 1 723 237 23 6 chr3 3787626 3787799 -214249359 + MER5B DNA MER1_type 1 176 -2 369 0 0 0 chr3 3788331 3788372 -214248786 + (TG)n Simple_repeat Simple_repeat 1 41 0 885 168 66 6 chr3 3789301 3789468 -214247690 + FRAM SINE Alu 1 176 0 1902 141 0 29 chr3 3789765 3790071 -214247087 - AluJb SINE Alu -4 308 12 201 74 0 0 chr3 3790102 3790129 -214247029 + (CA)n Simple_repeat Simple_repeat 2 28 0 543 276 167 10 chr3 3790135 3790327 -214246831 - MIR SINE MIR -21 241 20 492 111 70 0 chr3 3791039 3791300 -214245858 + (TA)n Simple_repeat Simple_repeat 1 279 0 516 102 51 21 chr3 3791319 3791556 -214245602 + (TA)n Simple_repeat Simple_repeat 1 244 0 314 292 22 0 chr3 3791556 3791645 -214245513 - L1MC4 LINE L1 -1339 6703 6613 284 165 11 0 chr3 3791647 3791738 -214245420 + (TA)n Simple_repeat Simple_repeat 1 92 0 657 116 35 0 chr3 3791752 3791925 -214245233 + (TA)n Simple_repeat Simple_repeat 2 180 0 307 203 72 0 chr3 3791931 3792000 -214245158 + L1MCa LINE L1 1992 2065 -4361 721 138 3 20 chr3 3792003 3792350 -214244808 + (TA)n Simple_repeat Simple_repeat 1 341 0 2112 81 0 7 chr3 3792395 3792668 -214244490 - AluY SINE Alu -12 299 29 189 196 0 0 chr3 3792728 3792774 -214244384 + (TA)n Simple_repeat Simple_repeat 2 47 0 378 192 70 6 chr3 3793098 3793186 -214243972 + MER5A DNA MER1_type 86 188 -1 2225 116 0 13 chr3 3793459 3793770 -214243388 - AluSx SINE Alu -5 307 1 570 234 22 7 chr3 3794618 3794755 -214242403 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3795838 3795907 -214241251 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3795908 3795989 -214241169 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3796069 3796133 -214241025 + MIR3 SINE MIR 98 161 -47 429 263 53 26 chr3 3797408 3797560 -214239598 + MIR3 SINE MIR 32 187 -21 2022 95 0 18 chr3 3798742 3799015 -214238143 - AluSq SINE Alu -15 298 31 1873 145 74 57 chr3 3799712 3800119 -214237039 + MLT2D LTR ERVL 1 414 0 373 331 24 24 chr3 3800200 3800369 -214236789 - MLT1K LTR MaLR -195 393 225 1278 194 20 103 chr3 3801105 3801503 -214235655 - MLT1A1 LTR MaLR 0 365 1 211 176 15 29 chr3 3801713 3801781 -214235377 + (CATA)n Simple_repeat Simple_repeat 3 69 0 451 331 43 27 chr3 3802294 3802551 -214234607 + L3 LINE CR1 1160 1420 -157 1739 157 52 0 chr3 3803029 3803320 -214233838 - AluSx SINE Alu 0 305 1 378 222 25 12 chr3 3803445 3803526 -214233632 - L2 LINE L2 -6 3307 3226 387 245 32 39 chr3 3804433 3804588 -214232570 + L1ME2 LINE L1 6001 6154 -10 24 53 0 0 chr3 3804834 3804872 -214232286 + AT_rich Low_complexity Low_complexity 1 38 0 1311 204 51 19 chr3 3806819 3807133 -214230025 - MER58B DNA MER1_type -14 327 4 337 279 140 7 chr3 3807286 3807422 -214229736 - MIR SINE MIR -105 157 4 308 286 75 106 chr3 3809829 3809990 -214227168 + MIR3 SINE MIR 46 201 -7 1483 182 78 7 chr3 3810135 3810404 -214226754 - AluJb SINE Alu -24 288 1 486 321 40 36 chr3 3810412 3810661 -214226497 - MER102a DNA MER1_type 0 330 81 281 360 18 0 chr3 3810750 3810864 -214226294 + L2 LINE L2 2201 2316 -998 195 69 0 0 chr3 3811110 3811139 -214226019 + (CA)n Simple_repeat Simple_repeat 2 30 0 475 146 171 8 chr3 3811139 3811262 -214225896 + L1MA9 LINE L1 6164 6306 -6 215 254 98 142 chr3 3811316 3811521 -214225637 + L3 LINE CR1 1178 1373 -204 206 181 0 56 chr3 3812070 3812142 -214225016 + A-rich Low_complexity Low_complexity 5 72 0 409 333 16 38 chr3 3813802 3813988 -214223170 - MER5A DNA MER1_type -6 183 2 198 118 0 0 chr3 3814169 3814203 -214222955 + (CAT)n Simple_repeat Simple_repeat 2 35 0 259 260 27 0 chr3 3814216 3814289 -214222869 - MIR SINE MIR -10 252 178 258 105 0 0 chr3 3814426 3814464 -214222694 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 143 0 0 chr3 3816052 3816087 -214221071 + (TA)n Simple_repeat Simple_repeat 2 36 0 321 308 61 33 chr3 3816825 3817039 -214220119 - L1ME4a LINE L1 -3 6118 5899 404 313 162 14 chr3 3817049 3817400 -214219758 - L1ME4a LINE L1 -262 5859 5457 271 366 54 71 chr3 3817400 3817750 -214219408 + L2 LINE L2 2907 3250 -22 500 43 29 0 chr3 3820258 3820328 -214216830 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 271 145 0 65 chr3 3820390 3820452 -214216706 + Alu SINE Alu 241 298 -3 240 211 0 0 chr3 3820503 3820560 -214216598 + (TA)n Simple_repeat Simple_repeat 1 57 0 309 284 32 0 chr3 3820560 3820655 -214216503 - L1MC4 LINE L1 -1336 6706 6609 1957 146 0 13 chr3 3821260 3821561 -214215597 + AluSx SINE Alu 1 297 -15 277 114 0 0 chr3 3821721 3821765 -214215393 - U5 snRNA snRNA -72 44 1 428 306 121 29 chr3 3821782 3821988 -214215170 + MIR SINE MIR 26 250 -12 1045 280 100 32 chr3 3822114 3822585 -214214573 - L2 LINE L2 -7 3306 2804 619 193 29 0 chr3 3822666 3822806 -214214352 - L1 LINE L1 -938 5208 5065 * 1427 167 10 33 chr3 3822789 3822994 -214214164 + L1MA5 LINE L1 5895 6092 -208 2106 142 0 3 chr3 3822994 3823305 -214213853 - AluSx SINE Alu 0 312 3 1427 167 10 33 chr3 3823305 3823405 -214213753 + L1MA5 LINE L1 6092 6193 -107 7261 47 3 0 chr3 3823619 3824691 -214212467 + L1PA5 LINE L1 5079 6153 -1 1092 216 124 63 chr3 3826951 3827273 -214209885 - MLT1H LTR MaLR -4 545 179 2289 95 0 7 chr3 3827273 3827579 -214209579 + AluY SINE Alu 1 304 -7 1092 216 124 63 chr3 3827579 3827764 -214209394 - MLT1H LTR MaLR -370 179 7 216 372 74 8 chr3 3827865 3827986 -214209172 - MIR SINE MIR -113 149 21 202 281 167 21 chr3 3828160 3828256 -214208902 + L2 LINE L2 3121 3230 -42 23181 59 7 9 chr3 3828379 3831555 -214205603 + L1P LINE L1 14 3184 -2962 1792 171 26 61 chr3 3832080 3832536 -214204622 - L1MB8 LINE L1 -7 6171 5732 2161 128 0 28 chr3 3833138 3833459 -214203699 - AluSx SINE Alu 0 312 1 850 326 86 10 chr3 3833634 3834030 -214203128 + MLT1J1 LTR MaLR 8 433 -13 276 343 153 7 chr3 3834111 3834248 -214202910 + L2 LINE L2 3111 3267 -5 2331 92 13 0 chr3 3834436 3834739 -214202419 - AluSp SINE Alu -6 307 1 21 36 0 0 chr3 3834742 3834770 -214202388 + AT_rich Low_complexity Low_complexity 1 28 0 257 233 17 0 chr3 3835243 3835303 -214201855 + MIR SINE MIR 199 259 -3 292 308 17 50 chr3 3835331 3835451 -214201707 + MIR3 SINE MIR 78 193 -15 2189 114 13 3 chr3 3836782 3837089 -214200069 - AluSx SINE Alu -2 310 1 504 45 0 0 chr3 3837260 3837327 -214199831 + (TG)n Simple_repeat Simple_repeat 2 68 0 254 223 66 0 chr3 3837491 3837574 -214199584 + MIR SINE MIR 90 143 -65 300 291 6 91 chr3 3837742 3837850 -214199308 + MIR SINE MIR 78 169 -93 1820 138 71 15 chr3 3837850 3838175 -214198983 - MER61A LTR ERV1 0 343 1 300 291 6 91 chr3 3838175 3838231 -214198927 + MIR SINE MIR 169 228 -34 484 284 44 29 chr3 3839669 3839873 -214197285 - L2 LINE L2 0 3313 3107 257 310 118 48 chr3 3840165 3840394 -214196764 - L3 LINE CR1 -80 1497 1253 224 254 0 56 chr3 3842754 3842825 -214194333 + MIR SINE MIR 69 135 -127 802 241 21 70 chr3 3843133 3843461 -214193697 + MARNA DNA Mariner 155 466 -120 708 147 0 0 chr3 3844049 3844151 -214193007 - FRAM SINE Alu -30 146 45 2202 120 0 13 chr3 3844264 3844580 -214192578 + AluSx SINE Alu 1 312 0 828 129 0 23 chr3 3844580 3844703 -214192455 - FLAM_C SINE Alu -180 122 1 4472 144 33 9 chr3 3845346 3846157 -214191001 - Tigger1 DNA MER2_type -11 2407 1577 356 153 34 0 chr3 3846178 3846296 -214190862 + (TA)n Simple_repeat Simple_repeat 1 122 0 927 126 16 0 chr3 3846296 3846423 -214190735 - AluSq/x SINE Alu -181 131 3 9917 133 15 8 chr3 3846424 3847999 -214189159 - Tigger1 DNA MER2_type -829 1589 3 238 282 13 13 chr3 3848563 3848641 -214188517 - MIR SINE MIR -114 148 71 2211 92 3 0 chr3 3848852 3849157 -214188001 - AluSq SINE Alu 0 306 1 2061 191 26 0 chr3 3849264 3849642 -214187516 + MLT1B LTR MaLR 3 390 0 646 269 34 17 chr3 3849720 3849895 -214187263 - MIR SINE MIR -10 252 75 182 327 0 0 chr3 3850142 3850197 -214186961 - MIR SINE MIR -67 141 87 403 234 110 28 chr3 3852543 3852688 -214184470 + L2 LINE L2 3109 3265 -48 1779 151 7 0 chr3 3852783 3853086 -214184072 + AluSx SINE Alu 1 305 0 467 352 5 9 chr3 3853181 3853391 -214183767 - MIR SINE MIR -12 250 42 1967 177 69 14 chr3 3853777 3854278 -214182880 + MLT2A2 LTR ERVL 3 553 -1 198 143 0 0 chr3 3855595 3855630 -214181528 + (CA)n Simple_repeat Simple_repeat 1 35 0 1355 272 79 88 chr3 3856580 3857604 -214179554 - L2 LINE L2 0 3313 2289 183 327 192 24 chr3 3858138 3858346 -214178812 - MIR SINE MIR 0 262 20 193 235 136 25 chr3 3858853 3858934 -214178224 + MIR SINE MIR 20 109 -153 1852 167 0 19 chr3 3859015 3859360 -214177798 + AluJb SINE Alu 1 339 0 3473 93 12 14 chr3 3860057 3860552 -214176606 - LOR1a LTR ERV1 -3 494 1 2045 100 0 78 chr3 3861377 3861708 -214175450 - AluY SINE Alu -6 305 1 204 122 73 0 chr3 3863217 3863299 -214173859 + (TA)n Simple_repeat Simple_repeat 1 88 0 461 337 57 26 chr3 3863373 3863566 -214173592 + MIR SINE MIR 53 251 -11 204 125 0 0 chr3 3864138 3864170 -214172988 + (CATA)n Simple_repeat Simple_repeat 3 34 0 228 67 0 0 chr3 3864171 3864201 -214172957 + (TG)n Simple_repeat Simple_repeat 2 31 0 1517 175 7 78 chr3 3864202 3864510 -214172648 - AluJo SINE Alu -26 286 1 24 32 0 0 chr3 3864611 3864642 -214172516 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr3 3865525 3865551 -214171607 + (CA)n Simple_repeat Simple_repeat 2 27 0 635 230 5 108 chr3 3865777 3865803 -214171355 - MER58A DNA MER1_type -2227 193 166 2013 124 0 14 chr3 3865803 3866094 -214171064 - AluSx SINE Alu -19 293 7 635 230 5 108 chr3 3866094 3866280 -214170878 - MER58A DNA MER1_type -2254 166 3 1317 199 11 14 chr3 3866854 3867130 -214170028 - MLT1B LTR MaLR 0 390 116 2588 53 0 0 chr3 3868460 3868762 -214168396 + AluY SINE Alu 1 302 -9 433 284 46 0 chr3 3869070 3869179 -214167979 - MER81 DNA DNA 0 114 1 2176 55 0 15 chr3 3869728 3870000 -214167158 - AluY SINE Alu 0 311 44 368 293 30 15 chr3 3870009 3870207 -214166951 + L1ME3A LINE L1 5086 5286 -860 439 283 118 55 chr3 3870224 3870801 -214166357 + L1ME3A LINE L1 5420 6032 -138 553 303 76 5 chr3 3871136 3871321 -214165837 - MIR SINE MIR -17 245 48 2057 133 3 7 chr3 3871322 3871630 -214165528 + AluSx SINE Alu 1 307 -5 857 247 174 12 chr3 3871989 3872333 -214164825 - Charlie4a DNA MER1_type -27 481 82 565 311 50 25 chr3 3873379 3873617 -214163541 + MIR SINE MIR 19 262 0 1378 118 86 14 chr3 3873683 3873903 -214163255 + AluSx SINE Alu 1 236 -76 2030 41 0 34 chr3 3874598 3874867 -214162291 - L1PA7 LINE L1 -1 6153 5894 366 373 20 15 chr3 3875103 3875304 -214161854 - MIR SINE MIR -10 252 51 1654 177 3 3 chr3 3875753 3876041 -214161117 - AluJo SINE Alu -24 288 1 284 309 56 32 chr3 3877061 3877187 -214159971 - L2 LINE L2 -18 3295 3167 561 244 60 50 chr3 3877559 3877760 -214159398 + MIR SINE MIR 2 204 -58 378 201 35 7 chr3 3877869 3878013 -214159145 + (CATATA)n Simple_repeat Simple_repeat 3 150 0 187 172 0 125 chr3 3878014 3878078 -214159080 - MIR SINE MIR -7 255 200 206 176 0 0 chr3 3878209 3878243 -214158915 + MIR SINE MIR 206 239 -23 2201 96 0 10 chr3 3878547 3878839 -214158319 + AluSc SINE Alu 10 298 -11 4623 106 10 0 chr3 3878840 3879569 -214157589 - L1P LINE L1 -743 5403 4690 4813 80 35 1 chr3 3879569 3880235 -214156923 + L1PA8A LINE L1 5444 6131 0 403 267 0 8 chr3 3880527 3880657 -214156501 + L1MB7 LINE L1 6043 6174 -5 1059 287 176 33 chr3 3881400 3882349 -214154809 + L2 LINE L2 2216 3309 -4 456 325 67 21 chr3 3882781 3883021 -214154137 + MLT1L LTR MaLR 20 270 -345 1821 147 7 7 chr3 3883805 3884111 -214153047 + MER47A DNA MER2_type 60 365 -1 297 0 0 0 chr3 3884119 3884152 -214153006 + (TG)n Simple_repeat Simple_repeat 2 34 0 288 137 0 0 chr3 3884918 3884969 -214152189 + (T)n Simple_repeat Simple_repeat 1 51 0 269 316 0 0 chr3 3885155 3885234 -214151924 + MIR SINE MIR 130 208 -54 21 0 0 0 chr3 3886067 3886088 -214151070 + AT_rich Low_complexity Low_complexity 1 21 0 245 266 117 0 chr3 3886194 3886288 -214150870 - L2 LINE L2 0 3272 3168 24 91 0 0 chr3 3886448 3886514 -214150644 + AT_rich Low_complexity Low_complexity 1 66 0 1412 210 24 48 chr3 3886766 3887138 -214150020 - MLT1A1 LTR MaLR -2 363 1 1480 122 0 65 chr3 3887490 3887737 -214149421 + AluSg SINE Alu 7 237 -73 984 182 0 17 chr3 3887780 3887956 -214149202 - FRAM SINE Alu -3 173 1 29 28 0 0 chr3 3888369 3888405 -214148753 + AT_rich Low_complexity Low_complexity 1 36 0 360 0 0 0 chr3 3888643 3888683 -214148475 + (TG)n Simple_repeat Simple_repeat 1 40 0 605 302 45 16 chr3 3888706 3889100 -214148058 - L1ME3A LINE L1 -218 5952 5542 365 329 150 28 chr3 3889712 3889787 -214147371 + L2 LINE L2 2618 2682 -631 1505 90 9 9 chr3 3889787 3889998 -214147160 - L1PA10 LINE L1 -4 6164 5954 365 329 150 28 chr3 3889998 3890550 -214146608 + L2 LINE L2 2682 3313 0 1335 231 65 39 chr3 3890582 3890998 -214146160 + L2 LINE L2 2481 2907 -407 1258 188 90 0 chr3 3891011 3891277 -214145881 + AluJo SINE Alu 1 290 -22 555 195 0 18 chr3 3891298 3891411 -214145747 + L1MB1 LINE L1 6035 6145 -44 860 202 0 0 chr3 3891457 3891630 -214145528 + L1MA10 LINE L1 6161 6333 -1 576 274 55 20 chr3 3891748 3891949 -214145209 + L2 LINE L2 3105 3312 -1 588 260 148 51 chr3 3892106 3892479 -214144679 + MLT1I LTR MaLR 1 409 0 7681 52 4 0 chr3 3893578 3894543 -214142615 - L1PA5 LINE L1 -1531 4615 3647 7159 45 5 1 chr3 3894543 3896081 -214141077 + L1PA5 LINE L1 4610 6146 -8 255 61 0 0 chr3 3896257 3896290 -214140868 + (A)n Simple_repeat Simple_repeat 1 33 0 508 311 13 0 chr3 3896913 3897064 -214140094 + MIR SINE MIR 10 162 -100 21 36 0 0 chr3 3897331 3897359 -214139799 + AT_rich Low_complexity Low_complexity 1 28 0 469 298 82 33 chr3 3899520 3899765 -214137393 + MIR SINE MIR 2 258 -4 333 295 65 29 chr3 3901108 3901247 -214135911 + L3 LINE CR1 936 1079 -498 195 114 0 0 chr3 3901493 3901528 -214135630 + (CA)n Simple_repeat Simple_repeat 2 36 0 2210 96 10 10 chr3 3901574 3901876 -214135282 + AluSx SINE Alu 1 302 -10 343 271 66 60 chr3 3902807 3902973 -214134185 + MIR SINE MIR 52 218 -44 2236 130 16 32 chr3 3903525 3903895 -214133263 - THE1B LTR MaLR 0 364 1 1675 181 3 13 chr3 3904112 3904427 -214132731 + AluJo SINE Alu 1 312 0 2868 6 0 0 chr3 3904629 3904940 -214132218 + AluYa5 SINE Alu 1 311 0 282 317 146 0 chr3 3905045 3905168 -214131990 - L2 LINE L2 0 3272 3132 411 236 71 7 chr3 3905276 3905416 -214131742 + L1MA10 LINE L1 6179 6327 -7 808 323 51 51 chr3 3905463 3905783 -214131375 - L2 LINE L2 -219 3053 2737 1958 111 0 0 chr3 3905783 3906045 -214131113 + AluSx SINE Alu 48 309 -3 808 323 51 51 chr3 3906045 3906219 -214130939 - L2 LINE L2 -535 2737 2564 1747 221 86 8 chr3 3906229 3906705 -214130453 + MLT1F1 LTR MaLR 1 513 -54 198 0 0 0 chr3 3907485 3907507 -214129651 + (T)n Simple_repeat Simple_repeat 1 22 0 686 251 63 58 chr3 3907536 3907628 -214129530 - MER113 DNA MER1_type? -1 520 430 2049 124 3 3 chr3 3907628 3907934 -214129224 + AluSg SINE Alu 1 306 0 686 251 63 58 chr3 3907934 3908187 -214128971 - MER113 DNA MER1_type? -91 430 172 25 31 0 0 chr3 3908208 3908240 -214128918 + AT_rich Low_complexity Low_complexity 1 32 0 257 333 24 0 chr3 3908327 3908411 -214128747 - MIR3 SINE MIR -54 154 69 2118 108 7 0 chr3 3909710 3909996 -214127162 + AluSq SINE Alu 9 296 -17 199 0 31 31 chr3 3910002 3910034 -214127124 + (CAA)n Simple_repeat Simple_repeat 2 33 0 235 279 64 79 chr3 3910135 3910275 -214126883 + MIR SINE MIR 82 219 -43 5758 36 1 0 chr3 3910442 3911132 -214126026 - L1PA4 LINE L1 -1 6154 5464 410 132 13 0 chr3 3911348 3911424 -214125734 + (CCTA)n Simple_repeat Simple_repeat 3 79 0 2187 123 23 0 chr3 3911568 3911870 -214125288 - AluSq SINE Alu -3 310 2 258 282 17 60 chr3 3912218 3912335 -214124823 - MIR SINE MIR -147 115 4 215 297 102 47 chr3 3912439 3912567 -214124591 + L2 LINE L2 3178 3312 -1 278 297 117 39 chr3 3912885 3913013 -214124145 + MIR3 SINE MIR 60 197 -11 219 281 211 47 chr3 3913866 3913994 -214123164 + MIR3 SINE MIR 10 158 -50 2569 167 21 4 chr3 3914125 3914604 -214122554 - L1MB7 LINE L1 -16 6168 5682 250 284 126 11 chr3 3914796 3914891 -214122267 + MIR SINE MIR 61 166 -96 688 255 34 0 chr3 3915108 3915257 -214121901 - MER5A DNA MER1_type -35 154 1 400 330 139 14 chr3 3915323 3915538 -214121620 + MIR SINE MIR 6 247 -15 237 65 0 0 chr3 3916228 3916259 -214120899 + (CA)n Simple_repeat Simple_repeat 2 32 0 227 255 0 0 chr3 3916410 3916461 -214120697 + (CACCAT)n Simple_repeat Simple_repeat 1 51 0 431 320 92 44 chr3 3916614 3916864 -214120294 - MIR SINE MIR 0 262 1 344 341 103 0 chr3 3918698 3918824 -214118334 - MIR3 SINE MIR -5 203 65 275 258 11 21 chr3 3919067 3919160 -214117998 - LTR16C LTR ERVL -7 484 393 2172 138 0 0 chr3 3919445 3919749 -214117409 + AluSx SINE Alu 1 304 -8 980 293 19 74 chr3 3920002 3920158 -214117000 - L2 LINE L2 0 3313 3150 2314 86 0 43 chr3 3920158 3920483 -214116675 + AluY SINE Alu 1 311 0 980 293 19 74 chr3 3920483 3920756 -214116402 - L2 LINE L2 -163 3150 2908 1888 131 7 0 chr3 3920788 3921062 -214116096 - AluSx SINE Alu -36 276 1 695 204 5 5 chr3 3921079 3921270 -214115888 - L1MA4 LINE L1 -6 6294 6104 2208 118 3 6 chr3 3922044 3922358 -214114800 - AluSp SINE Alu 0 313 1 480 321 9 71 chr3 3923180 3923404 -214113754 + MIR SINE MIR 46 255 -7 363 295 27 9 chr3 3923488 3923600 -214113558 + L2 LINE L2 3159 3272 0 2202 123 7 0 chr3 3923877 3924187 -214112971 - AluSx SINE Alu 0 312 1 430 270 34 59 chr3 3925640 3925816 -214111342 - Charlie8 DNA MER1_type -2180 237 65 1992 143 0 10 chr3 3925816 3926116 -214111042 + AluJo SINE Alu 1 297 -15 430 270 34 59 chr3 3926116 3926143 -214111015 - Charlie8 DNA MER1_type -2352 65 39 239 347 51 10 chr3 3926276 3926374 -214110784 - L2 LINE L2 -27 3245 3144 266 333 13 0 chr3 3926540 3926615 -214110543 + MIR SINE MIR 36 111 -97 501 63 0 13 chr3 3926766 3926845 -214110313 - L1MA7 LINE L1 -2 6289 6212 207 0 0 0 chr3 3927952 3927975 -214109183 + (T)n Simple_repeat Simple_repeat 1 23 0 341 269 42 152 chr3 3928197 3928506 -214108652 - L2 LINE L2 -4 3268 2994 215 295 67 19 chr3 3928663 3928768 -214108390 + MIR SINE MIR 130 239 -23 2269 99 3 7 chr3 3928907 3929211 -214107947 + AluY SINE Alu 1 303 -8 255 337 99 35 chr3 3929439 3929611 -214107547 + MIR SINE MIR 2 184 -78 353 354 18 18 chr3 3929869 3930031 -214107127 - MIR SINE MIR -70 192 32 271 313 240 7 chr3 3931609 3931759 -214105399 + MIR3 SINE MIR 21 205 -3 233 57 0 0 chr3 3932153 3932188 -214104970 - HAL1 LINE L1 -174 2333 2299 409 304 88 0 chr3 3932334 3932515 -214104643 - HAL1 LINE L1 -393 2114 1918 181 350 100 0 chr3 3932809 3932929 -214104229 - MIR SINE MIR 0 262 131 241 274 11 32 chr3 3933021 3933116 -214104042 - L1MB8 LINE L1 -58 6120 6028 3708 143 22 14 chr3 3933117 3933265 -214103893 + L1PA16 LINE L1 5520 5665 -501 1799 181 0 13 chr3 3933265 3933579 -214103579 + AluJo SINE Alu 1 310 -2 3708 143 22 14 chr3 3933579 3934061 -214103097 + L1PA16 LINE L1 5665 6155 -11 359 299 55 0 chr3 3934308 3934435 -214102723 - MER117 DNA MER1_type -7 190 57 556 281 94 0 chr3 3934497 3934668 -214102490 + MIR SINE MIR 19 205 -57 260 159 87 58 chr3 3935480 3935549 -214101609 - L2 LINE L2 -66 3247 3177 329 275 181 29 chr3 3935595 3935766 -214101392 + MIR SINE MIR 17 213 -49 2031 164 0 6 chr3 3935851 3936162 -214100996 + AluJb SINE Alu 1 309 -3 336 239 110 28 chr3 3936315 3936424 -214100734 - L2 LINE L2 -3 3310 3193 353 293 64 0 chr3 3936719 3936859 -214100299 - MIR SINE MIR -14 248 100 1528 276 58 9 chr3 3937633 3938180 -214098978 + L1MC4a LINE L1 7233 7806 -2 2361 56 0 75 chr3 3938525 3938847 -214098311 - AluY SINE Alu -13 298 1 336 265 26 8 chr3 3939578 3939695 -214097463 + (TA)n Simple_repeat Simple_repeat 2 120 0 287 237 79 66 chr3 3941229 3941381 -214095777 + MER103 DNA DNA 1 154 -12 595 241 26 101 chr3 3941501 3941729 -214095429 + MER58A DNA MER1_type 11 221 -3 227 259 183 46 chr3 3943265 3943396 -214093762 - MIR3 SINE MIR -58 150 2 6329 50 0 2 chr3 3945181 3945999 -214091159 - L1PA7 LINE L1 -3 6151 5336 14672 95 3 22 chr3 3945999 3948331 -214088827 + L1PA7 LINE L1 3057 5343 -803 186 338 65 57 chr3 3948593 3948728 -214088430 + L2 LINE L2 2211 2351 -963 1803 165 3 7 chr3 3948728 3949062 -214088096 + AluSq SINE Alu 1 333 0 186 338 65 57 chr3 3949062 3949188 -214087970 + L2 LINE L2 2351 2475 -839 4938 115 40 24 chr3 3949619 3950443 -214086715 - L1PA15 LINE L1 0 6165 5329 2589 211 5 16 chr3 3950445 3951024 -214086134 + L1P LINE L1 2172 2744 -3402 471 320 53 44 chr3 3951426 3951651 -214085507 - MIR SINE MIR -23 239 13 333 116 20 3 chr3 3951713 3951963 -214085195 + AluJb SINE Alu 12 331 0 2406 46 0 0 chr3 3952932 3953267 -214083891 - AluY SINE Alu 0 336 2 989 153 6 12 chr3 3954040 3954232 -214082926 + AluSq SINE Alu 123 313 0 348 296 37 0 chr3 3954479 3954587 -214082571 - L2 LINE L2 -10 3303 3192 932 189 11 194 chr3 3954704 3955166 -214081992 + LTR24 LTR ERV1 188 467 0 504 286 17 28 chr3 3955252 3955430 -214081728 - L2 LINE L2 -5 3308 3133 1873 152 40 3 chr3 3955480 3955777 -214081381 + AluSx SINE Alu 1 308 -4 2240 214 6 4 chr3 3956902 3957445 -214079713 + L1P LINE L1 2908 3451 -2695 209 280 14 140 chr3 3957453 3957596 -214079562 + L2 LINE L2 3179 3303 -10 243 0 0 0 chr3 3961920 3961947 -214075211 + (CA)n Simple_repeat Simple_repeat 2 28 0 325 307 62 36 chr3 3962955 3963147 -214074011 + L1ME4a LINE L1 5702 5898 -223 1800 188 106 33 chr3 3963659 3964084 -214073074 - MLT1C LTR MaLR -8 459 4 225 244 0 0 chr3 3964231 3964276 -214072882 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 320 330 48 37 chr3 3964993 3965181 -214071977 - MIR SINE MIR -69 193 4 743 168 0 0 chr3 3965304 3965429 -214071729 + FLAM_C SINE Alu 12 136 -7 219 139 0 0 chr3 3967161 3967197 -214069961 + (CAG)n Simple_repeat Simple_repeat 3 38 0 208 401 8 8 chr3 3967533 3967558 -214069600 - MIR SINE MIR -16 192 168 6873 42 37 3 chr3 3967558 3968883 -214068275 + L1PA5 LINE L1 4786 6154 0 208 401 8 8 chr3 3968883 3969011 -214068147 - MIR SINE MIR -39 169 38 891 200 0 11 chr3 3969592 3969767 -214067391 + AluJb SINE Alu 131 303 -9 2300 96 0 3 chr3 3971409 3971710 -214065448 + AluSc SINE Alu 1 300 -9 273 57 0 0 chr3 3972207 3972242 -214064916 + (TCC)n Simple_repeat Simple_repeat 2 36 0 3582 163 16 5 chr3 3972526 3973196 -214063962 + L1MA5 LINE L1 5618 6295 -5 300 111 0 0 chr3 3974562 3974607 -214062551 + (CAG)n Simple_repeat Simple_repeat 3 47 0 183 404 57 7 chr3 3974942 3975083 -214062075 - MIR3 SINE MIR -16 192 45 2192 197 83 10 chr3 3977517 3978025 -214059133 + L1MB8 LINE L1 5619 6163 -15 364 280 40 0 chr3 3979247 3979347 -214057811 + MER5A DNA MER1_type 9 112 -77 378 0 0 0 chr3 3979825 3979867 -214057291 + (CA)n Simple_repeat Simple_repeat 1 42 0 260 287 13 102 chr3 3980996 3981153 -214056005 + L2 LINE L2 3171 3313 0 2092 141 3 3 chr3 3981443 3981756 -214055402 + AluSq SINE Alu 1 313 0 237 258 103 52 chr3 3982283 3982438 -214054720 + MER102b DNA MER1_type 164 326 -15 1564 250 101 2 chr3 3982778 3983206 -214053952 + MER34 LTR ERV1 26 495 -47 180 0 0 0 chr3 3983781 3983801 -214053357 + (CA)n Simple_repeat Simple_repeat 1 20 0 200 276 0 0 chr3 3985042 3985100 -214052058 + CT-rich Low_complexity Low_complexity 3 60 0 222 193 23 23 chr3 3986995 3987083 -214050075 + GA-rich Low_complexity Low_complexity 6 93 0 180 164 66 0 chr3 3987099 3987160 -214049998 + GA-rich Low_complexity Low_complexity 1 65 0 244 287 161 0 chr3 3987290 3987377 -214049781 - MIR3 SINE MIR -27 181 81 796 171 0 0 chr3 3987531 3987660 -214049498 - FLAM_A SINE Alu -4 129 1 229 315 22 11 chr3 3991282 3991374 -214045784 + MER102b DNA MER1_type 234 326 -15 311 254 35 122 chr3 3991555 3991752 -214045406 + MIR3 SINE MIR 16 195 -13 2164 94 0 63 chr3 3994252 3994583 -214042575 - AluSg SINE Alu 0 310 1 477 151 264 0 chr3 3994685 3994791 -214042367 + MER20 DNA MER1_type 62 195 -24 258 81 0 0 chr3 3995453 3995490 -214041668 - L2 LINE L2 -1 3312 3276 1034 245 112 99 chr3 3996628 3997476 -214039682 - L1MC4 LINE L1 -6 8036 7178 205 277 27 74 chr3 3998015 3998163 -214038995 + L2 LINE L2 2665 2805 -509 1023 211 79 4 chr3 3998358 3998586 -214038572 + MIR SINE MIR 17 261 -1 298 338 127 19 chr3 3998880 3999037 -214038121 + L2 LINE L2 3099 3272 0 338 303 46 28 chr3 3999196 3999305 -214037853 + MIR SINE MIR 37 147 -61 291 227 76 0 chr3 3999533 3999599 -214037559 + MER91C DNA MER1_type 35 105 -35 331 162 59 15 chr3 3999804 3999872 -214037286 + MLT1D LTR MaLR 7 77 -428 * 1800 153 0 15 chr3 3999871 4000224 -214036934 - Tigger4(Zombi) DNA MER2_type -4 2727 34 1651 206 72 60 chr3 4000236 4000669 -214036489 + MLT1D LTR MaLR 68 505 0 512 269 8 35 chr3 4001074 4001258 -214035900 + L1ME2 LINE L1 5984 6166 0 248 272 35 46 chr3 4001427 4001600 -214035558 + HAL1 LINE L1 1424 1594 -913 1330 268 26 17 chr3 4001931 4002465 -214034693 + L1MC/D LINE L1 4298 4836 -1310 598 182 16 107 chr3 4002489 4002676 -214034482 - L1MB7 LINE L1 -5 6179 6010 * 1071 194 60 39 chr3 4002670 4002928 -214034230 + L1MC/D LINE L1 4845 5111 -1035 2250 110 3 0 chr3 4002928 4003219 -214033939 + AluSx SINE Alu 1 292 -20 1071 194 60 39 chr3 4003219 4003243 -214033915 + L1MC/D LINE L1 5111 5133 -1013 1813 149 0 32 chr3 4003243 4003575 -214033583 + AluJb SINE Alu 9 312 0 748 203 7 0 chr3 4003592 4003735 -214033423 + L1MC/D LINE L1 5497 5640 -602 1449 206 127 2 chr3 4004847 4005232 -214031926 + MLT2B2 LTR ERVL 2 508 -7 2274 107 6 21 chr3 4006186 4006524 -214030634 - MER1B DNA MER1_type 0 337 5 4545 133 41 13 chr3 4007155 4007904 -214029254 + MER4D LTR ERV1 134 903 0 1045 261 48 85 chr3 4007928 4008411 -214028747 - MLT1J LTR MaLR -44 467 3 201 283 17 33 chr3 4009814 4009874 -214027284 - L2 LINE L2 -8 3264 3206 180 200 0 0 chr3 4012198 4012238 -214024920 + GA-rich Low_complexity Low_complexity 1 40 0 2414 143 44 1 chr3 4013270 4013783 -214023375 - MER6A DNA MER2_type 0 605 1 185 0 40 0 chr3 4014366 4014391 -214022767 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 6728 125 135 91 chr3 4015661 4017287 -214019871 - pTR5 LTR ERV1 -1 2437 741 5870 215 38 34 chr3 4017717 4018143 -214019015 - L1MC/D LINE L1 -743 5403 4980 2191 123 53 8 chr3 4018143 4018501 -214018657 - THE1C LTR MaLR -1 374 1 9919 121 43 5 chr3 4018501 4020022 -214017136 - THE1C-int LTR MaLR 0 1580 1 1884 128 68 44 chr3 4020022 4020388 -214016770 - THE1C LTR MaLR 0 375 1 5870 215 38 34 chr3 4020388 4020576 -214016582 - L1MC/D LINE L1 -1166 4980 4794 2200 113 0 10 chr3 4020576 4021019 -214016139 + AluSx SINE Alu 1 312 0 5870 215 38 34 chr3 4021019 4022229 -214014929 - L1MC/D LINE L1 -1352 4794 3659 28 48 0 0 chr3 4023072 4023114 -214014044 + AT_rich Low_complexity Low_complexity 1 42 0 3545 94 0 0 chr3 4023122 4023603 -214013555 + L1PA11 LINE L1 5694 6174 0 442 325 104 0 chr3 4024412 4024624 -214012534 + MIR SINE MIR 5 238 -24 24 32 0 0 chr3 4024637 4024668 -214012490 + AT_rich Low_complexity Low_complexity 1 31 0 634 266 108 9 chr3 4024893 4025115 -214012043 - L3 LINE CR1 -745 832 589 1272 236 59 13 chr3 4025191 4025564 -214011594 - L1MB7 LINE L1 -16 6168 5779 274 331 103 14 chr3 4025831 4025976 -214011182 - L3 LINE CR1 -1096 481 324 378 224 224 0 chr3 4026147 4026254 -214010904 + MIR SINE MIR 4 134 -128 285 296 28 28 chr3 4027013 4027155 -214010003 + L1ME LINE L1 5682 5823 -298 181 341 24 24 chr3 4027655 4027740 -214009418 - L2 LINE L2 0 3272 3188 2255 94 3 7 chr3 4027992 4028290 -214008868 - AluSp SINE Alu -16 297 1 791 229 0 61 chr3 4028368 4028582 -214008576 + MER3 DNA MER1_type 1 201 -8 187 329 25 0 chr3 4028686 4028765 -214008393 - L2 LINE L2 -644 2670 2590 2317 100 10 0 chr3 4028768 4029069 -214008089 - AluSq SINE Alu -9 304 1 1784 166 7 0 chr3 4029482 4029771 -214007387 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr3 4029781 4029801 -214007357 + (CAA)n Simple_repeat Simple_repeat 2 21 0 227 50 0 0 chr3 4029849 4029889 -214007269 - AluSg/x SINE Alu -2 301 262 733 74 11 0 chr3 4029889 4029984 -214007174 - AluSg/x SINE Alu -113 197 102 224 344 32 71 chr3 4031026 4031180 -214005978 + L2 LINE L2 3119 3266 -6 2035 114 3 36 chr3 4031646 4031954 -214005204 + AluY SINE Alu 1 298 -13 387 283 78 95 chr3 4032978 4033388 -214003770 + MLT1L LTR MaLR 120 522 -93 279 322 98 9 chr3 4033958 4034139 -214003019 + MIR3 SINE MIR 4 202 -60 374 311 123 34 chr3 4034335 4034570 -214002588 - MIR SINE MIR 0 262 7 303 93 0 0 chr3 4035035 4035078 -214002080 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 2261 93 3 13 chr3 4036311 4036624 -214000534 - AluSx SINE Alu 0 312 3 766 138 86 0 chr3 4036884 4037036 -214000122 - L1MB4 LINE L1 -5 6175 6011 273 289 50 63 chr3 4037296 4037455 -213999703 + MER5A DNA MER1_type 30 186 -3 2189 112 7 0 chr3 4038239 4038543 -213998615 - AluSq SINE Alu -7 306 1 617 182 45 0 chr3 4039023 4039155 -213998003 + MER33 DNA MER1_type 56 193 -131 785 222 12 18 chr3 4039883 4040054 -213997104 - MER20 DNA MER1_type -19 200 31 610 253 118 27 chr3 4040095 4040316 -213996842 + MIR SINE MIR 22 262 0 234 298 64 11 chr3 4040339 4040433 -213996725 + MIR3 SINE MIR 63 161 -47 430 364 16 5 chr3 4040453 4040640 -213996518 + MIR SINE MIR 9 197 -65 204 24 48 48 chr3 4040652 4040694 -213996464 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 270 320 104 8 chr3 4041084 4041209 -213995949 + L2 LINE L2 3171 3307 -6 435 323 15 26 chr3 4041971 4042166 -213994992 + MER117 DNA MER1_type 5 197 0 614 274 38 28 chr3 4044156 4044368 -213992790 + L3 LINE CR1 709 922 -655 648 269 122 5 chr3 4044931 4045128 -213992030 + MIR SINE MIR 21 240 -22 2741 184 4 13 chr3 4045145 4045668 -213991490 + L1MB5 LINE L1 5649 6166 -8 184 217 0 43 chr3 4045779 4045825 -213991333 - L3 LINE CR1 -129 1448 1405 330 346 90 14 chr3 4045845 4046056 -213991102 + MIR SINE MIR 20 246 -16 375 330 82 16 chr3 4047307 4047489 -213989669 + MIR SINE MIR 23 216 -46 375 330 82 16 chr3 4047580 4047762 -213989396 + MIR SINE MIR 23 216 -46 375 330 82 16 chr3 4047853 4048035 -213989123 + MIR SINE MIR 23 216 -46 226 341 0 22 chr3 4048412 4048503 -213988655 + MIR SINE MIR 55 143 -119 373 347 64 6 chr3 4049716 4049889 -213987269 - MIR3 SINE MIR -11 197 15 27 29 0 0 chr3 4050414 4050448 -213986710 + AT_rich Low_complexity Low_complexity 1 34 0 1896 158 3 3 chr3 4051614 4051936 -213985222 - AluJb SINE Alu 0 312 1 2041 169 8 0 chr3 4051936 4052297 -213984861 - L1MB1 LINE L1 -53 6136 5773 856 138 0 103 chr3 4052299 4052386 -213984772 + L1M3 LINE L1 5607 5669 -665 2313 106 0 0 chr3 4052386 4052688 -213984470 - AluSx SINE Alu -10 302 1 856 138 0 103 chr3 4052688 4052774 -213984384 + L1M3 LINE L1 5669 5762 -572 592 349 4 24 chr3 4053993 4054245 -213982913 + MIR SINE MIR 3 249 -13 249 279 44 6 chr3 4054267 4054425 -213982733 + (TA)n Simple_repeat Simple_repeat 1 164 0 21 0 0 0 chr3 4054519 4054540 -213982618 + AT_rich Low_complexity Low_complexity 1 21 0 235 329 75 41 chr3 4055978 4056124 -213981034 - L2 LINE L2 -1 3271 3121 23 0 0 0 chr3 4056344 4056367 -213980791 + AT_rich Low_complexity Low_complexity 1 23 0 255 31 0 0 chr3 4056976 4057008 -213980150 + (TAGA)n Simple_repeat Simple_repeat 2 33 0 279 0 0 0 chr3 4057258 4057289 -213979869 + (CAGC)n Simple_repeat Simple_repeat 4 34 0 800 311 108 28 chr3 4057372 4057910 -213979248 + L2 LINE L2 2734 3308 -5 1133 109 0 0 chr3 4058860 4059025 -213978133 - L1PA14 LINE L1 0 6161 5997 409 216 14 0 chr3 4061005 4061144 -213976014 + (TA)n Simple_repeat Simple_repeat 2 142 0 306 211 22 44 chr3 4061149 4061239 -213975919 + L1MC4 LINE L1 6616 6703 -1339 230 243 0 0 chr3 4061277 4061347 -213975811 - L1MC3 LINE L1 -1137 6648 6579 381 80 0 2 chr3 4061739 4061795 -213975363 - L1PA5 LINE L1 -255 5899 5851 544 13 0 64 chr3 4061796 4061874 -213975284 + L1PA3 LINE L1 6083 6155 0 198 171 0 0 chr3 4062350 4062391 -213974767 + (CA)n Simple_repeat Simple_repeat 2 42 0 851 203 45 17 chr3 4062646 4062823 -213974335 - MER5A DNA MER1_type 0 189 8 279 229 42 31 chr3 4062991 4063087 -213974071 - MER94 DNA DNA -1 133 37 189 171 0 0 chr3 4063428 4063463 -213973695 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1985 128 0 7 chr3 4063486 4063774 -213973384 - AluSx SINE Alu -26 286 1 305 176 28 28 chr3 4065135 4065243 -213971915 + (TA)n Simple_repeat Simple_repeat 2 109 0 275 204 46 102 chr3 4065749 4065857 -213971301 + L2 LINE L2 3210 3311 -2 246 105 0 0 chr3 4065932 4065970 -213971188 + (CAATT)n Simple_repeat Simple_repeat 1 38 0 180 154 26 26 chr3 4065971 4066010 -213971148 - L2 LINE L2 -5 3267 3229 507 231 13 45 chr3 4066297 4066453 -213970705 + MER105 DNA DNA 54 204 0 1812 152 27 3 chr3 4066506 4066802 -213970356 - MER2 DNA MER2_type -42 303 1 199 303 45 34 chr3 4067544 4067633 -213969525 + L2 LINE L2 2868 2957 -315 2509 152 24 15 chr3 4067711 4068171 -213968987 - L1MA7 LINE L1 0 6291 5828 2520 160 42 25 chr3 4068179 4068891 -213968267 + L1M2 LINE L1 4942 5663 -649 1367 184 79 11 chr3 4068891 4069009 -213968149 + AluJb SINE Alu 2 111 -201 246 32 0 0 chr3 4069009 4069040 -213968118 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1367 184 79 11 chr3 4069040 4069199 -213967959 + AluJb SINE Alu 111 298 -14 2520 160 42 25 chr3 4069199 4069333 -213967825 + L1M2 LINE L1 5663 5793 -519 413 187 0 11 chr3 4069334 4069425 -213967733 + (CA)n Simple_repeat Simple_repeat 2 91 0 244 175 0 53 chr3 4069425 4069482 -213967676 + L1M2 LINE L1 5783 5836 -455 364 284 220 15 chr3 4069484 4069752 -213967406 + L2 LINE L2 2991 3313 0 347 297 0 9 chr3 4070316 4070427 -213966731 + L2 LINE L2 3163 3272 0 318 327 39 20 chr3 4070697 4070961 -213966197 - L1MC4a LINE L1 -299 5822 5637 225 0 0 0 chr3 4071377 4071402 -213965756 + (T)n Simple_repeat Simple_repeat 1 25 0 40641 68 3 6 chr3 4071487 4071572 -213965586 + L1PA5 LINE L1 2 86 -6068 2451 62 3 3 chr3 4071572 4071877 -213965281 - AluY SINE Alu -6 305 1 40641 68 3 6 chr3 4071877 4077954 -213959204 + L1PA5 LINE L1 86 6152 -2 246 226 85 104 chr3 4078395 4078427 -213958731 - L2 LINE L2 0 3313 3282 1652 207 81 29 chr3 4078427 4078871 -213958287 + MLT1C LTR MaLR 1 467 0 246 226 85 104 chr3 4078871 4078944 -213958214 - L2 LINE L2 -31 3282 3210 203 79 0 79 chr3 4079045 4079083 -213958075 + (TAAAAA)n Simple_repeat Simple_repeat 1 35 0 294 29 0 0 chr3 4079530 4079565 -213957593 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 305 34 17 chr3 4080130 4080248 -213956910 - MIR SINE MIR -1 261 142 474 161 44 21 chr3 4080482 4080712 -213956446 + GA-rich Low_complexity Low_complexity 1 235 0 579 275 71 6 chr3 4080732 4080914 -213956244 + MIR SINE MIR 6 199 -63 213 205 0 0 chr3 4080953 4080992 -213956166 + (CAT)n Simple_repeat Simple_repeat 1 39 0 314 379 0 0 chr3 4080997 4081100 -213956058 + L3 LINE CR1 1435 1537 -40 2349 64 7 10 chr3 4081233 4081531 -213955627 - AluSq SINE Alu -16 297 1 221 269 216 15 chr3 4081687 4081821 -213955337 + MIR SINE MIR 74 234 -28 28 71 0 0 chr3 4081972 4082028 -213955130 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 4082145 4082167 -213954991 + AT_rich Low_complexity Low_complexity 1 22 0 2260 60 46 0 chr3 4082397 4082680 -213954478 - AluSg SINE Alu -14 296 1 315 170 0 0 chr3 4083462 4083515 -213953643 - L1PA5 LINE L1 -151 6003 5951 357 279 105 12 chr3 4085484 4085656 -213951502 + MIR SINE MIR 59 246 -16 2136 128 3 0 chr3 4085854 4086158 -213951000 + AluSx SINE Alu 1 305 -7 693 317 97 38 chr3 4086563 4086674 -213950484 - LTR16C LTR ERVL -20 471 368 1932 148 13 0 chr3 4086674 4086972 -213950186 + AluSx SINE Alu 1 302 -10 693 317 97 38 chr3 4086972 4087305 -213949853 - LTR16C LTR ERVL -123 368 1 191 383 66 48 chr3 4088152 4088379 -213948779 - L3 LINE CR1 -44 1533 1303 4477 123 13 20 chr3 4089079 4089824 -213947334 - L1MC1 LINE L1 0 6333 5594 2292 75 0 3 chr3 4090452 4090746 -213946412 + AluY SINE Alu 1 293 -18 186 318 45 0 chr3 4090890 4090956 -213946202 + MIR3 SINE MIR 89 157 -51 273 295 21 11 chr3 4091005 4091100 -213946058 - MIR SINE MIR -94 168 73 240 285 46 15 chr3 4092530 4092660 -213944498 - L1P LINE L1 -2409 3737 3604 24 32 0 0 chr3 4093530 4093561 -213943597 + AT_rich Low_complexity Low_complexity 1 31 0 2307 92 10 0 chr3 4093565 4093859 -213943299 + AluSx SINE Alu 1 297 -15 515 323 106 0 chr3 4094406 4094641 -213942517 - MIR SINE MIR 0 262 3 2246 94 0 3 chr3 4094853 4095151 -213942007 + AluSq SINE Alu 1 297 -16 1447 244 29 12 chr3 4095174 4095584 -213941574 + L1ME3 LINE L1 5745 6161 -1 205 51 51 0 chr3 4095739 4095778 -213941380 + (CAGG)n Simple_repeat Simple_repeat 4 44 0 1503 114 55 4 chr3 4096067 4096304 -213940854 - L1PA10 LINE L1 -6 6162 5914 244 226 32 11 chr3 4097535 4097628 -213939530 + (TA)n Simple_repeat Simple_repeat 2 96 0 2359 94 0 0 chr3 4097859 4098166 -213938992 + AluY SINE Alu 1 307 -4 317 298 44 9 chr3 4098502 4098616 -213938542 + MIR3 SINE MIR 81 198 -10 223 363 105 0 chr3 4100524 4100648 -213936510 - MIR SINE MIR -125 137 1 224 323 56 10 chr3 4100686 4100784 -213936374 - MIR SINE MIR -66 142 53 2974 218 189 21 chr3 4100785 4101344 -213935814 - L1MC4a LINE L1 -11 7797 7333 1735 190 0 28 chr3 4101344 4101665 -213935493 - AluJb SINE Alu 0 312 1 2974 218 189 21 chr3 4101665 4101767 -213935391 - L1MC4a LINE L1 -475 7333 7249 447 19 0 0 chr3 4101767 4101819 -213935339 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2974 218 189 21 chr3 4101819 4102173 -213934985 - L1MC4a LINE L1 -559 7249 6610 1818 220 44 80 chr3 4102624 4103276 -213933882 + MLT1E2 LTR MaLR 1 626 0 239 333 45 58 chr3 4103514 4103670 -213933488 + MIR3 SINE MIR 4 113 -95 2272 147 78 40 chr3 4104037 4104487 -213932671 + MLT1C LTR MaLR 1 467 0 1307 167 25 21 chr3 4104708 4104990 -213932168 + L1MA4 LINE L1 6009 6291 -9 294 305 169 0 chr3 4106074 4106192 -213930966 + MIR3 SINE MIR 32 169 -39 25 51 0 0 chr3 4106523 4106562 -213930596 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 4106701 4106723 -213930435 + AT_rich Low_complexity Low_complexity 1 22 0 393 22 0 0 chr3 4106955 4107001 -213930157 + (TA)n Simple_repeat Simple_repeat 2 47 0 266 209 0 77 chr3 4107022 4107113 -213930045 - L1MC4 LINE L1 -1347 6695 6612 554 280 52 28 chr3 4107729 4107940 -213929218 - MIR SINE MIR -13 249 34 206 108 54 0 chr3 4107977 4108014 -213929144 + A-rich Low_complexity Low_complexity 6 44 0 1413 203 53 4 chr3 4111081 4111362 -213925796 + AluJb SINE Alu 1 295 -17 1789 271 86 31 chr3 4111545 4111600 -213925558 - L1ME2 LINE L1 -9 6155 6104 2038 153 25 11 chr3 4111600 4111966 -213925192 + L1PA16 LINE L1 5792 6162 -4 1789 271 86 31 chr3 4111966 4112319 -213924839 - L1ME2 LINE L1 -60 6104 5772 2123 129 7 0 chr3 4112319 4112621 -213924537 + AluSx SINE Alu 1 304 -8 1789 271 86 31 chr3 4112621 4112954 -213924204 - L1ME2 LINE L1 -392 5772 5372 280 109 0 0 chr3 4113407 4113453 -213923705 - MADE1 DNA Mariner -34 46 1 1938 196 58 18 chr3 4114018 4114467 -213922691 + MLT1C LTR MaLR 1 467 0 258 136 0 0 chr3 4114500 4114544 -213922614 + L1MA6 LINE L1 6033 6076 -224 421 143 0 0 chr3 4114544 4114607 -213922551 + MLT1C LTR MaLR 403 465 -2 1236 159 68 0 chr3 4114643 4114894 -213922264 + L1MA6 LINE L1 6033 6300 0 2035 211 130 12 chr3 4117028 4117154 -213920004 - L1MC4 LINE L1 -6 8036 7926 324 0 0 0 chr3 4117154 4117190 -213919968 + (CA)n Simple_repeat Simple_repeat 2 37 0 2035 211 130 12 chr3 4117190 4117717 -213919441 - L1MC4 LINE L1 -116 7926 7306 260 351 0 0 chr3 4117717 4117794 -213919364 - L2 LINE L2 -57 3256 3180 206 300 135 38 chr3 4117837 4118074 -213919084 - L2 LINE L2 -121 3192 2933 2361 75 0 10 chr3 4118235 4118530 -213918628 - AluSx SINE Alu -20 292 1 1846 164 0 0 chr3 4118535 4118843 -213918315 - AluSx SINE Alu 0 308 1 236 293 38 57 chr3 4121482 4121514 -213915644 - L2 LINE L2 0 3272 3241 1652 207 81 29 chr3 4121514 4121958 -213915200 + MLT1C LTR MaLR 1 467 0 236 293 38 57 chr3 4121958 4122031 -213915127 - L2 LINE L2 -31 3241 3169 202 50 0 100 chr3 4122131 4122171 -213914987 + (TAAAAA)n Simple_repeat Simple_repeat 1 36 0 294 29 0 0 chr3 4122616 4122651 -213914507 + (CA)n Simple_repeat Simple_repeat 2 36 0 296 305 34 17 chr3 4123216 4123334 -213913824 - MIR SINE MIR -1 261 142 259 192 58 0 chr3 4123459 4123511 -213913647 + Tigger5 DNA MER2_type 1 55 -2268 492 149 45 22 chr3 4123565 4123794 -213913364 + GA-rich Low_complexity Low_complexity 1 234 0 579 275 71 6 chr3 4123814 4123996 -213913162 + MIR SINE MIR 6 199 -63 213 205 0 0 chr3 4124035 4124074 -213913084 + (CAT)n Simple_repeat Simple_repeat 1 39 0 314 379 0 0 chr3 4124079 4124182 -213912976 + L3 LINE CR1 1435 1537 -40 2411 70 0 3 chr3 4124315 4124613 -213912545 - AluSq SINE Alu -16 297 1 2260 60 46 0 chr3 4124952 4125235 -213911923 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr3 4125465 4125489 -213911669 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr3 4125606 4125662 -213911496 + AT_rich Low_complexity Low_complexity 1 56 0 221 269 216 15 chr3 4125813 4125947 -213911211 - MIR SINE MIR -28 234 74 2437 74 0 3 chr3 4126103 4126413 -213910745 + AluY SINE Alu 1 309 -2 369 302 6 52 chr3 4127302 4127334 -213909824 - MIR SINE MIR -67 195 163 2303 96 0 7 chr3 4127334 4127637 -213909521 - AluSp SINE Alu -12 301 1 369 302 6 52 chr3 4127637 4127776 -213909382 - MIR SINE MIR -99 163 32 246 279 18 81 chr3 4127914 4128025 -213909133 - MIR SINE MIR -56 152 49 204 198 20 40 chr3 4128124 4128225 -213908933 + A-rich Low_complexity Low_complexity 2 100 0 183 250 89 0 chr3 4128811 4128867 -213908291 + L2 LINE L2 3248 3308 -5 393 323 31 26 chr3 4128883 4129078 -213908080 + MLT1J1 LTR MaLR 2 197 -249 1464 131 36 0 chr3 4129521 4129743 -213907415 + MER30 DNA MER1_type 1 230 0 2471 79 0 0 chr3 4130230 4130534 -213906624 - AluSc SINE Alu -5 304 1 206 349 0 64 chr3 4130899 4131008 -213906150 + L2 LINE L2 2998 3099 -173 1967 138 14 0 chr3 4134358 4134641 -213902517 - AluSx SINE Alu -25 287 1 466 303 141 29 chr3 4135805 4136082 -213901076 - L2 LINE L2 -3 3310 3003 2174 94 3 3 chr3 4138183 4138470 -213898688 + AluSg SINE Alu 1 287 -23 2543 46 3 3 chr3 4139074 4139378 -213897780 + AluY SINE Alu 1 304 -7 1350 149 164 11 chr3 4139621 4139883 -213897275 + AluSq SINE Alu 2 303 0 2418 75 0 0 chr3 4140641 4140959 -213896199 - AluY SINE Alu 0 318 1 24 0 0 0 chr3 4141663 4141687 -213895471 + AT_rich Low_complexity Low_complexity 1 24 0 244 325 0 24 chr3 4143614 4143697 -213893461 + L3b LINE CR1 1250 1330 -253 239 304 173 52 chr3 4143724 4143915 -213893243 + MIR SINE MIR 1 214 -48 204 318 85 64 chr3 4143927 4144147 -213893011 + MIR SINE MIR 17 256 -6 294 284 167 59 chr3 4145182 4145604 -213891554 + L2 LINE L2 2764 3220 -52 31 26 0 0 chr3 4145703 4145741 -213891417 + AT_rich Low_complexity Low_complexity 1 38 0 1075 200 23 5 chr3 4145898 4146113 -213891045 - MER20 DNA MER1_type 0 219 1 2369 116 11 21 chr3 4146520 4146899 -213890259 + THE1C LTR MaLR 1 375 0 2246 96 0 0 chr3 4147566 4147867 -213889291 + AluY SINE Alu 1 301 -10 432 264 97 7 chr3 4149012 4149167 -213887991 - MIR SINE MIR -10 252 84 278 320 47 16 chr3 4150026 4150154 -213887004 + MIR3 SINE MIR 37 168 -40 407 279 162 13 chr3 4150212 4150366 -213886792 + MER5A DNA MER1_type 13 189 0 4370 105 14 0 chr3 4150648 4151274 -213885884 + MER41B LTR ERV1 1 635 0 229 188 59 71 chr3 4151928 4152013 -213885145 + LTR67 LTR ERVL 459 542 -15 206 373 0 27 chr3 4152076 4152151 -213885007 + MIR SINE MIR 27 99 -109 2116 116 0 0 chr3 4152863 4153156 -213884002 - AluSq SINE Alu -20 293 1 352 309 73 57 chr3 4153183 4153429 -213883729 + MIR SINE MIR 2 251 -11 1543 62 0 19 chr3 4153479 4153690 -213883468 - AluY SINE Alu -3 308 102 1242 90 50 20 chr3 4153697 4153897 -213883261 - LTR12 LTR ERV1 -23 691 486 280 274 11 0 chr3 4153918 4154013 -213883145 - LTR30 LTR ERV1 -79 643 548 4175 168 105 54 chr3 4154016 4155185 -213881973 - pTR5 LTR ERV1 -411 2027 743 814 108 0 0 chr3 4155185 4155296 -213881862 - AluY SINE Alu -200 111 1 1540 137 92 30 chr3 4155316 4155651 -213881507 - L1MA7 LINE L1 -10 6281 5926 916 179 25 0 chr3 4155653 4155815 -213881343 + Tigger7 DNA MER2_type 1 166 -539 267 233 60 69 chr3 4156045 4156161 -213880997 + MIR3 SINE MIR 83 197 -11 187 269 115 0 chr3 4157076 4157154 -213880004 + L2 LINE L2 739 825 -2489 311 360 27 0 chr3 4158461 4158572 -213878586 - MIR3 SINE MIR -47 161 48 415 333 64 64 chr3 4158700 4159045 -213878113 + L1MEc LINE L1 4 348 -5771 309 307 12 37 chr3 4159254 4159417 -213877741 + L1MEc LINE L1 602 760 -5359 870 231 126 40 chr3 4159621 4159695 -213877463 + MLT1I LTR MaLR 5 71 -338 2266 104 7 0 chr3 4159695 4159994 -213877164 + AluSx SINE Alu 1 301 -11 870 231 126 40 chr3 4159994 4160292 -213876866 + MLT1I LTR MaLR 71 409 0 340 322 50 26 chr3 4160434 4160928 -213876230 + L1MEc LINE L1 1198 1652 -868 21 0 0 0 chr3 4161004 4161025 -213876133 + AT_rich Low_complexity Low_complexity 1 21 0 229 380 71 5 chr3 4161680 4161864 -213875294 + L2 LINE L2 3118 3313 0 2117 120 0 13 chr3 4162827 4163126 -213874032 + AluSg SINE Alu 1 295 -15 2114 183 47 10 chr3 4163226 4163631 -213873527 + MSTB LTR MaLR 1 420 -6 3618 124 60 28 chr3 4163650 4164264 -213872894 - MER51A LTR ERV1 0 634 1 1669 171 32 20 chr3 4164310 4164555 -213872603 - L1MB7 LINE L1 -15 6169 5917 2447 108 19 8 chr3 4164555 4164926 -213872232 - THE1C LTR MaLR 0 375 1 1669 171 32 20 chr3 4164926 4165024 -213872134 - L1MB7 LINE L1 -267 5917 5822 206 209 90 45 chr3 4165164 4165231 -213871927 - MIR SINE MIR -88 174 105 420 269 88 18 chr3 4165478 4165649 -213871509 - Charlie8 DNA MER1_type -2161 256 74 312 310 44 0 chr3 4165937 4166050 -213871108 - L2 LINE L2 -1 3271 3154 426 217 167 0 chr3 4166474 4166594 -213870564 + MLT1H LTR MaLR 405 544 -5 270 0 0 0 chr3 4166664 4166694 -213870464 + (TC)n Simple_repeat Simple_repeat 2 31 0 234 0 0 0 chr3 4166693 4166719 -213870439 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 1036 200 16 5 chr3 4166727 4166917 -213870241 - AluJb SINE Alu -32 280 89 1428 216 71 31 chr3 4167198 4167647 -213869511 + MLT1C LTR MaLR 1 467 0 388 354 32 6 chr3 4169745 4169903 -213867255 + MIR SINE MIR 15 176 -86 263 280 32 21 chr3 4171402 4171495 -213865663 + L2 LINE L2 3179 3272 0 296 283 107 6 chr3 4171932 4172091 -213865067 + MIR SINE MIR 87 261 -1 412 336 80 29 chr3 4172781 4172946 -213864212 + MIR SINE MIR 13 195 -67 2045 130 0 3 chr3 4172946 4173231 -213863927 + AluSx SINE Alu 1 284 -28 412 336 80 29 chr3 4173231 4173303 -213863855 + MIR SINE MIR 195 262 0 2092 36 0 33 chr3 4174514 4174788 -213862370 - L1PA3 LINE L1 -3 6152 5888 859 191 30 6 chr3 4175308 4175476 -213861682 - LTR32 LTR ERVL 0 471 300 2027 155 21 15 chr3 4175508 4175843 -213861315 - LTR32 LTR ERVL -120 351 15 497 218 1 48 chr3 4175881 4176012 -213861146 + MER20 DNA MER1_type 32 155 -64 409 269 119 15 chr3 4176677 4176811 -213860347 + MIR SINE MIR 1 148 -114 2378 211 78 47 chr3 4176828 4177548 -213859610 + MER21B LTR ERV1 1 833 -30 282 284 0 12 chr3 4177570 4177651 -213859507 + MIR SINE MIR 162 241 -21 226 274 0 32 chr3 4177695 4177757 -213859401 - MIR SINE MIR -63 145 86 299 279 137 0 chr3 4178330 4178513 -213858645 - MER113 DNA MER1_type? -308 213 6 1313 177 170 0 chr3 4178515 4178809 -213858349 + MER2 DNA MER2_type 1 344 0 1221 235 66 28 chr3 4178840 4178978 -213858180 - MER39 LTR ERV1 -32 675 544 2328 35 45 3 chr3 4178978 4179268 -213857890 - AluY SINE Alu -9 302 1 1221 235 66 28 chr3 4179268 4179491 -213857667 - MER39 LTR ERV1 -163 544 300 282 29 0 0 chr3 4180236 4180271 -213856887 + (CA)n Simple_repeat Simple_repeat 2 36 0 379 326 45 15 chr3 4180497 4180629 -213856529 + MIR SINE MIR 19 154 -108 1929 202 42 77 chr3 4180843 4180876 -213856282 - MLT2B1 LTR ERVL -9 511 478 387 0 0 0 chr3 4180876 4180919 -213856239 + (TG)n Simple_repeat Simple_repeat 2 44 0 1929 202 42 77 chr3 4180919 4181415 -213855743 - MLT2B1 LTR ERVL -42 478 1 314 213 63 39 chr3 4181502 4181629 -213855529 - Charlie7 DNA MER1_type -13 2599 2470 22 0 0 0 chr3 4181643 4181665 -213855493 + AT_rich Low_complexity Low_complexity 1 22 0 1951 188 54 15 chr3 4181935 4182398 -213854760 - Charlie1b DNA MER1_type -41 482 2 1042 211 5 5 chr3 4183248 4183438 -213853720 + MER20 DNA MER1_type 29 218 -1 2521 167 42 10 chr3 4184695 4185199 -213851959 - L1MB4 LINE L1 -2 6178 5659 492 312 75 17 chr3 4185989 4186162 -213850996 - MIR SINE MIR -74 188 6 2378 127 94 2 chr3 4187580 4187982 -213849176 - Tigger2 DNA MER2_type 0 2718 2280 221 363 65 0 chr3 4188133 4188257 -213848901 + MIR SINE MIR 131 262 0 239 262 0 0 chr3 4188421 4188463 -213848695 + AluJo SINE Alu 2 43 -257 1170 195 44 12 chr3 4188491 4188742 -213848416 + AluJo SINE Alu 28 286 -26 742 241 29 0 chr3 4189169 4189339 -213847819 - FAM SINE Alu 0 175 1 22 0 0 0 chr3 4192355 4192377 -213844781 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr3 4193020 4193065 -213844093 + AT_rich Low_complexity Low_complexity 1 45 0 311 301 55 55 chr3 4194124 4194522 -213842636 - L1M4 LINE L1 -2849 3297 2900 757 165 41 0 chr3 4195219 4195340 -213841818 - AluJo SINE Alu -153 159 34 250 240 0 0 chr3 4195408 4195458 -213841700 - L2 LINE L2 0 3313 3264 374 302 101 13 chr3 4197065 4197214 -213839944 - MIR3 SINE MIR -9 199 38 326 308 45 0 chr3 4197654 4197787 -213839371 + Charlie8 DNA MER1_type 61 199 -2218 6193 230 57 61 chr3 4197882 4199953 -213837205 + L1MB7 LINE L1 2310 4388 -1994 2476 57 0 0 chr3 4199953 4200251 -213836907 - AluY SINE Alu -13 298 1 6193 230 57 61 chr3 4200251 4200301 -213836857 + L1MB7 LINE L1 4388 4437 -1945 180 0 0 0 chr3 4200301 4200321 -213836837 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 6193 230 57 61 chr3 4200321 4200856 -213836302 + L1MB7 LINE L1 4437 4962 -1420 3954 187 30 23 chr3 4200866 4201768 -213835390 + L1MB7 LINE L1 5492 6399 -21 1497 189 107 42 chr3 4203801 4204203 -213832955 + L1MB8 LINE L1 5744 6171 -7 287 360 71 20 chr3 4204206 4204403 -213832755 + MIR SINE MIR 30 236 -26 206 254 55 0 chr3 4204517 4204572 -213832586 - L2 LINE L2 -4 3309 3252 2070 119 3 0 chr3 4204963 4205256 -213831902 - AluSg SINE Alu -16 294 1 183 184 0 0 chr3 4205379 4205417 -213831741 + (CA)n Simple_repeat Simple_repeat 2 39 0 2242 91 7 3 chr3 4206536 4206844 -213830314 + AluSc SINE Alu 1 309 0 22 0 0 0 chr3 4207834 4207856 -213829302 + AT_rich Low_complexity Low_complexity 1 22 0 1002 171 32 3 chr3 4207874 4208076 -213829082 + L1PB3 LINE L1 5940 6141 -10 271 309 0 0 chr3 4209288 4209372 -213827786 - L2 LINE L2 -5 3308 3225 1790 158 3 10 chr3 4209375 4209685 -213827473 + AluJb SINE Alu 3 310 -2 317 298 37 42 chr3 4209723 4209938 -213827220 - L2 LINE L2 -79 3234 3021 8112 39 0 2 chr3 4210963 4212729 -213824429 + L1PA4 LINE L1 4389 6154 -1 1671 163 13 3 chr3 4212750 4213051 -213824107 - AluJb SINE Alu -3 309 6 915 256 183 28 chr3 4213136 4213562 -213823596 + MLT1H LTR MaLR 58 549 0 886 197 121 10 chr3 4213763 4213961 -213823197 - MIR SINE MIR 0 262 43 459 239 103 19 chr3 4214031 4214186 -213822972 - MIR SINE MIR 0 262 95 2215 253 67 13 chr3 4214284 4214973 -213822185 + L1ME3 LINE L1 5429 6154 -8 198 317 35 103 chr3 4215013 4215158 -213822000 - L2 LINE L2 0 3313 3179 2053 117 0 7 chr3 4215370 4215660 -213821498 + AluSx SINE Alu 2 289 -23 225 0 0 0 chr3 4215666 4215691 -213821467 + (TAAAA)n Simple_repeat Simple_repeat 3 27 0 227 355 48 0 chr3 4216659 4216783 -213820375 + L2 LINE L2 2716 2845 -469 696 282 18 26 chr3 4217109 4217336 -213819822 - L1MEc LINE L1 -6117 279 55 529 276 17 17 chr3 4217881 4218055 -213819103 - MIR SINE MIR -1 261 88 25 51 0 0 chr3 4218205 4218244 -213818914 + AT_rich Low_complexity Low_complexity 1 39 0 2556 147 19 2 chr3 4218830 4219253 -213817905 + MSTB1 LTR MaLR 1 430 -2 186 209 0 0 chr3 4219575 4219618 -213817540 + CT-rich Low_complexity Low_complexity 1 43 0 1709 177 0 3 chr3 4219618 4220085 -213817073 - AluJo SINE Alu 0 466 1 481 343 122 34 chr3 4220229 4220696 -213816462 - L3 LINE CR1 -13 1564 1057 296 253 111 52 chr3 4221349 4221715 -213815443 + L1ME4a LINE L1 5536 6028 -93 2360 161 50 27 chr3 4224231 4224746 -213812412 - L1MB7 LINE L1 -3 6181 5655 274 282 182 9 chr3 4226041 4226151 -213811007 - MIR SINE MIR -26 236 108 292 271 25 76 chr3 4226827 4226945 -213810213 + MIR SINE MIR 12 123 -139 878 141 0 21 chr3 4227147 4227289 -213809869 + FLAM_C SINE Alu 3 141 -2 407 257 6 6 chr3 4227365 4227540 -213809618 + (TA)n Simple_repeat Simple_repeat 2 176 0 224 135 0 19 chr3 4227612 4227664 -213809494 + (TA)n Simple_repeat Simple_repeat 1 51 0 303 272 129 0 chr3 4227784 4227931 -213809227 - L1MC4 LINE L1 -372 7670 7505 538 287 148 26 chr3 4228536 4228766 -213808392 - MIR SINE MIR 0 262 5 1444 74 0 0 chr3 4230508 4230684 -213806474 - AluSg/x SINE Alu -49 263 88 2094 128 0 3 chr3 4230931 4231236 -213805922 + AluSx SINE Alu 1 304 -8 2299 107 0 0 chr3 4231457 4231765 -213805393 - AluSg SINE Alu -2 308 1 270 0 0 0 chr3 4232992 4233022 -213804136 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1971 132 0 0 chr3 4233024 4233304 -213803854 - AluSx SINE Alu -32 280 1 237 192 61 40 chr3 4235138 4235237 -213801921 + L1ME4a LINE L1 6021 6121 0 26 64 0 0 chr3 4235305 4235352 -213801806 + AT_rich Low_complexity Low_complexity 1 47 0 309 214 36 71 chr3 4235358 4235470 -213801688 - L1ME4a LINE L1 -198 5923 5816 532 311 12 6 chr3 4235857 4236021 -213801137 - MIR SINE MIR -68 194 30 859 130 7 0 chr3 4237012 4237150 -213800008 + L1PA15 LINE L1 6026 6164 -1 2625 7 0 0 chr3 4237156 4237506 -213799652 + AluYb8 SINE Alu 1 350 0 260 158 18 0 chr3 4238714 4238771 -213798387 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 200 287 230 0 chr3 4238864 4238951 -213798207 - L2 LINE L2 -19 3294 3188 185 306 54 54 chr3 4239214 4239325 -213797833 + MIR SINE MIR 145 255 -7 355 227 113 78 chr3 4239334 4239475 -213797683 + L2 LINE L2 2438 2583 -731 195 253 67 80 chr3 4239745 4239820 -213797338 + L3b LINE CR1 1510 1583 0 268 177 16 32 chr3 4240870 4240932 -213796226 - MARNA DNA Mariner -225 361 301 4901 181 32 16 chr3 4241108 4242126 -213795032 + L1MA4 LINE L1 3919 4953 -1193 3122 102 5 0 chr3 4242099 4242539 -213794619 + L1PB1 LINE L1 5709 6150 -1 * 5833 159 30 14 chr3 4242543 4243908 -213793250 + L1MA4 LINE L1 4903 6289 -11 184 359 123 0 chr3 4244077 4244183 -213792975 - L2 LINE L2 -3 3269 3151 858 281 123 28 chr3 4244274 4244673 -213792485 + MLT1J LTR MaLR 71 507 -4 2010 123 0 19 chr3 4246374 4246711 -213790447 + AluSx SINE Alu 1 331 0 781 196 78 44 chr3 4247011 4247215 -213789943 + MER20 DNA MER1_type 5 215 -4 2128 119 39 33 chr3 4247595 4247957 -213789201 + THE1B LTR MaLR 1 364 0 216 193 91 80 chr3 4247957 4248045 -213789113 + MIR SINE MIR 61 149 -113 351 274 156 30 chr3 4248329 4248464 -213788694 + MIR SINE MIR 70 221 -41 388 328 17 0 chr3 4248491 4248610 -213788548 - L2 LINE L2 -41 3272 3152 21 0 0 0 chr3 4248610 4248631 -213788527 + AT_rich Low_complexity Low_complexity 1 21 0 7054 86 11 6 chr3 4249037 4249319 -213787839 - L1P3 LINE L1 -388 5766 5487 189 0 0 0 chr3 4249319 4249340 -213787818 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1983 120 3 7 chr3 4249340 4249623 -213787535 - AluSg SINE Alu -28 282 1 7054 86 11 6 chr3 4249623 4250768 -213786390 - L1P3 LINE L1 -666 5488 4335 * 9525 99 1 4 chr3 4250753 4252131 -213785027 - L1P3 LINE L1 -2297 3849 2477 6986 55 6 1 chr3 4252131 4253514 -213783644 + L1PA7 LINE L1 4766 6153 -1 903 196 0 0 chr3 4253600 4253768 -213783390 + AluJb SINE Alu 138 305 -7 220 220 0 0 chr3 4255376 4255426 -213781732 + (TTAAA)n Simple_repeat Simple_repeat 5 54 0 930 97 148 0 chr3 4256775 4256930 -213780228 - L1MA5A LINE L1 -45 6252 6075 207 258 32 16 chr3 4256931 4256993 -213780165 - MIR SINE MIR -105 157 95 263 329 12 24 chr3 4257061 4257146 -213780012 + MIR SINE MIR 16 99 -109 499 154 11 0 chr3 4258264 4258355 -213778803 - L1MA5A LINE L1 -2 6295 6204 522 283 87 6 chr3 4259233 4259406 -213777752 - L2 LINE L2 -8 3305 3119 224 247 41 27 chr3 4259446 4259519 -213777639 - L2 LINE L2 -313 3000 2927 182 243 0 0 chr3 4262038 4262075 -213775083 + L2 LINE L2 3227 3263 -9 1219 200 69 7 chr3 4262718 4263023 -213774135 - MER33 DNA MER1_type 0 324 1 1707 139 49 69 chr3 4263037 4263383 -213773775 + MER44D DNA MER2_type 1 609 0 1200 87 174 0 chr3 4263784 4263980 -213773178 + MER30 DNA MER1_type 1 230 0 438 72 87 14 chr3 4264898 4264967 -213772191 + L1PA11 LINE L1 6097 6170 -4 24 0 0 0 chr3 4265162 4265186 -213771972 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 4266262 4266293 -213770865 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 4266616 4266638 -213770520 + AT_rich Low_complexity Low_complexity 1 22 0 274 260 26 0 chr3 4266765 4266842 -213770316 + MER116 DNA Mariner 2 80 0 219 360 61 26 chr3 4266855 4266969 -213770189 - L3 LINE CR1 -1 1576 1459 248 313 70 0 chr3 4267777 4267892 -213769266 - MIR3 SINE MIR -24 184 62 2360 31 7 0 chr3 4268380 4268669 -213768489 + AluY SINE Alu 1 291 -20 22 35 0 0 chr3 4269202 4269231 -213767927 + AT_rich Low_complexity Low_complexity 1 29 0 882 180 12 0 chr3 4269910 4270077 -213767081 - FRAM SINE Alu -8 168 1 497 354 0 18 chr3 4270279 4270508 -213766650 + L2 LINE L2 2733 2957 -357 252 293 96 3 chr3 4271017 4271172 -213765986 - MIR SINE MIR -18 190 21 25 0 0 0 chr3 4271967 4271992 -213765166 + AT_rich Low_complexity Low_complexity 1 25 0 1820 105 35 0 chr3 4273013 4273270 -213763888 - AluSq SINE Alu -9 304 39 241 301 143 23 chr3 4273576 4273709 -213763449 + MIR3 SINE MIR 58 206 -2 463 287 67 22 chr3 4274605 4274828 -213762330 + L1ME LINE L1 5383 5615 -506 243 240 60 40 chr3 4274871 4274971 -213762187 + MIR SINE MIR 154 255 -7 21 36 0 0 chr3 4275140 4275168 -213761990 + AT_rich Low_complexity Low_complexity 1 28 0 643 182 22 29 chr3 4276126 4276391 -213760767 + MER33 DNA MER1_type 5 344 -19 1906 153 0 10 chr3 4276391 4276698 -213760460 - AluJo SINE Alu -4 308 5 196 319 264 0 chr3 4276944 4277035 -213760123 + MIR SINE MIR 25 139 -69 256 178 93 124 chr3 4277593 4277722 -213759436 + MIR SINE MIR 133 257 -5 255 289 74 8 chr3 4278719 4278840 -213758318 + MIR SINE MIR 92 220 -42 1256 242 43 3 chr3 4278887 4279213 -213757945 - MER58B DNA MER1_type -1 340 2 721 286 35 17 chr3 4280333 4280564 -213756594 + MIR SINE MIR 2 236 -26 277 303 49 17 chr3 4281387 4281515 -213755643 - MIR SINE MIR -69 139 18 2006 109 0 7 chr3 4281852 4282171 -213754987 - AluSg1 SINE Alu 0 318 2 2196 59 3 40 chr3 4282232 4282536 -213754622 - AluY SINE Alu -18 293 1 296 265 36 0 chr3 4282681 4282764 -213754394 - MIR SINE MIR -10 252 167 782 227 41 118 chr3 4282769 4283134 -213754024 - MER68 LTR ERV1 0 562 226 957 182 91 0 chr3 4283135 4283322 -213753836 + MER34C LTR ERV1 1 204 -381 230 289 13 0 chr3 4283358 4283434 -213753724 + LTR48 LTR ERV1 379 455 -332 990 175 74 23 chr3 4283634 4283851 -213753307 - MER68 LTR ERV1 -334 228 1 287 253 67 13 chr3 4283852 4283927 -213753231 - MIR SINE MIR -97 165 87 379 292 84 78 chr3 4283951 4284273 -213752885 - LTR16C LTR ERVL 0 491 168 308 175 0 0 chr3 4284778 4284841 -213752317 - L1MB7 LINE L1 -10 6174 6112 3799 193 40 29 chr3 4284877 4286034 -213751124 - L1MB7 LINE L1 -57 6127 4959 474 272 72 31 chr3 4286630 4286825 -213750333 - MIR SINE MIR -1 261 59 21 0 0 0 chr3 4287746 4287767 -213749391 + AT_rich Low_complexity Low_complexity 1 21 0 189 292 0 21 chr3 4288186 4288234 -213748924 - MER5A DNA MER1_type -41 148 102 932 202 0 22 chr3 4288853 4289031 -213748127 - FAM SINE Alu -1 174 1 220 351 15 37 chr3 4289274 4289408 -213747750 + L2 LINE L2 2920 3050 -263 218 326 116 14 chr3 4289420 4289558 -213747600 + L2 LINE L2 3158 3309 -4 259 103 103 17 chr3 4289625 4289683 -213747475 + L1ME4a LINE L1 6041 6103 -18 4645 78 8 2 chr3 4290853 4291485 -213745673 - L1PA14 LINE L1 0 6161 5526 2190 108 0 7 chr3 4291497 4291804 -213745354 - AluY SINE Alu -6 305 1 666 275 94 17 chr3 4291808 4292095 -213745063 + L1ME3A LINE L1 5521 5829 -341 25 31 0 0 chr3 4292457 4292489 -213744669 + AT_rich Low_complexity Low_complexity 1 32 0 443 304 112 6 chr3 4294092 4294253 -213742905 + MIR3 SINE MIR 16 193 -15 426 342 51 6 chr3 4294526 4294684 -213742474 + MER5B DNA MER1_type 8 172 -6 1955 168 40 6 chr3 4294733 4295085 -213742073 + THE1B LTR MaLR 1 364 0 1837 176 7 10 chr3 4295130 4295436 -213741722 + AluJo SINE Alu 1 305 -7 22 0 0 0 chr3 4295720 4295742 -213741416 + AT_rich Low_complexity Low_complexity 1 22 0 2296 140 75 10 chr3 4296024 4296424 -213740734 + MSTA LTR MaLR 3 428 0 407 273 12 61 chr3 4296870 4297035 -213740123 - L2 LINE L2 -600 2714 2558 249 292 66 29 chr3 4297121 4297258 -213739900 - L1MC/D LINE L1 -1905 5903 5762 477 297 60 78 chr3 4297385 4297668 -213739490 - MLT1I LTR MaLR 0 409 132 193 213 85 0 chr3 4297949 4297996 -213739162 + MIR SINE MIR 111 161 -101 551 266 77 27 chr3 4298022 4298244 -213738914 + MLT1J2 LTR MaLR 59 291 -159 284 214 14 14 chr3 4298275 4298345 -213738813 + MLT1J2 LTR MaLR 376 445 -5 6327 150 17 18 chr3 4298345 4299464 -213737694 - Tigger1 DNA MER2_type 0 2418 1301 6451 135 54 14 chr3 4299466 4300580 -213736578 - Tigger1 DNA MER2_type -1260 1158 1 244 347 116 0 chr3 4301757 4301852 -213735306 - L2 LINE L2 -21 3251 3146 236 127 16 48 chr3 4302011 4302074 -213735084 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 32 67 0 0 chr3 4302129 4302189 -213734969 + AT_rich Low_complexity Low_complexity 1 60 0 23 54 0 0 chr3 4302420 4302457 -213734701 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 4304242 4304263 -213732895 + AT_rich Low_complexity Low_complexity 1 21 0 1910 127 7 39 chr3 4304271 4304579 -213732579 + AluSx SINE Alu 1 298 -14 310 389 0 16 chr3 4304653 4304779 -213732379 + MIR3 SINE MIR 34 157 -51 350 280 65 11 chr3 4304964 4305057 -213732101 - MIR SINE MIR -81 127 30 24 0 0 0 chr3 4305421 4305445 -213731713 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 4305634 4305659 -213731499 + AT_rich Low_complexity Low_complexity 1 25 0 290 244 47 71 chr3 4306745 4306801 -213730357 - MIR SINE MIR -54 208 152 865 191 30 78 chr3 4306801 4307031 -213730127 - MER20 DNA MER1_type 0 219 1 290 244 47 71 chr3 4307031 4307101 -213730057 - MIR SINE MIR -110 152 85 674 318 173 41 chr3 4307106 4307833 -213729325 + L2 LINE L2 2462 3308 -5 26 0 0 0 chr3 4307953 4307979 -213729179 + AT_rich Low_complexity Low_complexity 1 26 0 195 69 0 0 chr3 4308049 4308078 -213729080 + (CA)n Simple_repeat Simple_repeat 1 29 0 22 0 0 0 chr3 4308751 4308773 -213728385 + AT_rich Low_complexity Low_complexity 1 22 0 1963 127 3 42 chr3 4309362 4309669 -213727489 - AluSx SINE Alu -15 297 3 351 318 59 42 chr3 4309746 4309985 -213727173 + MIR SINE MIR 7 249 -13 2294 96 3 10 chr3 4310328 4310642 -213726516 - AluSp SINE Alu -1 312 1 200 191 0 24 chr3 4310865 4310907 -213726251 + L2 LINE L2 3265 3305 -8 2814 167 6 28 chr3 4311888 4312427 -213724731 + L1MA7 LINE L1 5565 6091 -200 2126 202 49 14 chr3 4312442 4312888 -213724270 - MLT1C LTR MaLR -5 462 1 358 188 115 79 chr3 4312902 4312922 -213724236 - L1MC4 LINE L1 -92 7950 7932 1816 173 10 0 chr3 4312922 4313223 -213723935 - AluJb SINE Alu -8 304 1 358 188 115 79 chr3 4313223 4313367 -213723791 - L1MC4 LINE L1 -110 7932 7780 1860 156 23 7 chr3 4313385 4313692 -213723466 - MER7A DNA MER2_type -1 345 36 401 208 0 26 chr3 4313689 4313766 -213723392 - MER7A DNA MER2_type -272 76 2 * 456 285 37 49 chr3 4313766 4314012 -213723146 - L1MC4 LINE L1 -216 7779 7549 21 0 0 0 chr3 4314565 4314586 -213722572 + AT_rich Low_complexity Low_complexity 1 21 0 1876 34 0 0 chr3 4314739 4314972 -213722186 - L1P LINE L1 -776 5370 5138 5828 35 4 0 chr3 4314972 4315663 -213721495 + L1PA5 LINE L1 5436 6143 -11 207 235 0 0 chr3 4315663 4315714 -213721444 + (TA)n Simple_repeat Simple_repeat 2 52 0 787 121 0 57 chr3 4316172 4316313 -213720845 + FLAM_A SINE Alu 1 133 0 386 125 0 14 chr3 4316526 4316598 -213720560 + (TG)n Simple_repeat Simple_repeat 1 71 0 195 69 0 0 chr3 4317072 4317101 -213720057 + (CA)n Simple_repeat Simple_repeat 2 30 0 7448 36 5 0 chr3 4319982 4321470 -213715688 + L1PA5 LINE L1 4659 6150 -4 1087 237 71 40 chr3 4322506 4322860 -213714298 - MLT1A1 LTR MaLR 0 365 1 1745 158 3 52 chr3 4323123 4323433 -213713725 + AluJb SINE Alu 6 300 -12 448 169 48 32 chr3 4324151 4324275 -213712883 - LTR37A LTR ERV1 0 426 301 283 239 30 0 chr3 4324275 4324342 -213712816 - L2 LINE L2 -765 2549 2481 224 100 25 0 chr3 4325098 4325138 -213712020 + (TG)n Simple_repeat Simple_repeat 2 42 0 196 308 117 25 chr3 4325812 4325932 -213711226 + MIR3 SINE MIR 4 134 -74 286 269 157 60 chr3 4326947 4327163 -213709995 + MIR SINE MIR 20 256 -6 1043 219 88 3 chr3 4327333 4327630 -213709528 + MER33 DNA MER1_type 2 323 -1 204 294 109 22 chr3 4328666 4328758 -213708400 - MIR SINE MIR -78 130 31 1292 161 0 5 chr3 4329493 4329710 -213707448 + MLT2C2 LTR ERVL 1 216 -248 408 20 0 0 chr3 4329711 4329760 -213707398 + (CA)n Simple_repeat Simple_repeat 2 50 0 245 246 98 0 chr3 4330772 4330894 -213706264 + MER113 DNA MER1_type? 1 134 -387 332 299 28 28 chr3 4331226 4331370 -213705788 + L3 LINE CR1 1262 1405 -172 348 267 12 0 chr3 4332295 4332361 -213704797 + MLT1A1 LTR MaLR 3 69 -305 2042 169 91 0 chr3 4332361 4332734 -213704424 + MSTA LTR MaLR 1 407 -21 1660 189 7 3 chr3 4332787 4333089 -213704069 + MLT1A1 LTR MaLR 63 365 0 23 0 0 0 chr3 4333539 4333562 -213703596 + AT_rich Low_complexity Low_complexity 1 23 0 371 227 109 31 chr3 4333622 4333750 -213703408 - MIR SINE MIR -73 189 52 354 348 66 31 chr3 4334440 4334759 -213702399 + L2 LINE L2 2430 2759 -555 2884 88 2 0 chr3 4334846 4335242 -213701916 - L1PB2 LINE L1 -1 6150 5754 605 203 144 20 chr3 4335353 4335506 -213701652 - MER5A DNA MER1_type 0 189 18 249 248 50 40 chr3 4336182 4336283 -213700875 - L1M4 LINE L1 -408 5776 5675 857 327 107 52 chr3 4336806 4337058 -213700100 - L1M4 LINE L1 -1527 4619 4382 2492 55 0 0 chr3 4337058 4337366 -213699792 - AluY SINE Alu -3 308 1 857 327 107 52 chr3 4337366 4337707 -213699451 - L1M4 LINE L1 -1764 4382 4061 2272 39 32 0 chr3 4337707 4337990 -213699168 + AluY SINE Alu 1 292 -19 857 327 107 52 chr3 4337990 4339260 -213697898 - L1M4 LINE L1 -2085 4061 2652 1178 206 95 27 chr3 4339266 4339528 -213697630 - AluJo SINE Alu -30 282 3 28 0 0 0 chr3 4340318 4340346 -213696812 + AT_rich Low_complexity Low_complexity 1 28 0 385 178 100 0 chr3 4340350 4340440 -213696718 - L1MA9 LINE L1 -44 6268 6170 21 36 0 0 chr3 4340856 4340884 -213696274 + AT_rich Low_complexity Low_complexity 1 28 0 272 305 78 43 chr3 4340902 4341043 -213696115 + MER5B DNA MER1_type 5 150 -28 528 99 0 77 chr3 4341094 4341185 -213695973 - L1MA9 LINE L1 -837 5475 5392 3757 154 20 70 chr3 4341185 4342036 -213695122 + L1MA9 LINE L1 5492 6312 0 2309 107 0 0 chr3 4342054 4342363 -213694795 - AluSq SINE Alu -4 309 1 315 333 21 21 chr3 4342571 4342808 -213694350 - HAL1 LINE L1 -847 1660 1424 204 318 85 64 chr3 4343517 4343737 -213693421 - MIR SINE MIR -6 256 17 239 304 173 52 chr3 4343749 4343940 -213693218 - MIR SINE MIR -48 214 1 244 325 0 24 chr3 4343967 4344050 -213693108 - L3b LINE CR1 -253 1330 1250 24 0 0 0 chr3 4345976 4346000 -213691158 + AT_rich Low_complexity Low_complexity 1 24 0 2371 80 0 0 chr3 4346704 4347022 -213690136 + AluY SINE Alu 1 318 0 1678 103 157 4 chr3 4347780 4348042 -213689116 - AluSq SINE Alu 0 303 2 2535 52 3 3 chr3 4348285 4348591 -213688567 - AluY SINE Alu -5 306 1 2160 98 3 3 chr3 4349196 4349483 -213687675 - AluSg SINE Alu -23 287 1 466 303 141 29 chr3 4351584 4351861 -213685297 + L2 LINE L2 3003 3310 -3 1967 138 14 0 chr3 4353025 4353308 -213683850 + AluSx SINE Alu 1 287 -25 206 349 0 64 chr3 4356657 4356766 -213680392 - L2 LINE L2 -173 3099 2998 189 0 0 0 chr3 4356944 4356965 -213680193 + (A)n Simple_repeat Simple_repeat 1 21 0 2268 83 3 0 chr3 4357135 4357484 -213679674 + AluYb8 SINE Alu 1 350 0 884 213 0 24 chr3 4358831 4359000 -213678158 - FAM SINE Alu -10 165 1 499 275 76 28 chr3 4359269 4359480 -213677678 - MLT1J2 LTR MaLR -171 279 59 190 213 85 0 chr3 4359506 4359553 -213677605 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 4359834 4360117 -213677041 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 4360244 4360381 -213676777 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 4360467 4360632 -213676526 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 4361078 4361478 -213675680 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 4361760 4361782 -213675376 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 4362066 4362372 -213674786 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 4362417 4362769 -213674389 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 4362818 4362976 -213674182 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 4363249 4363410 -213673748 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 4365013 4365045 -213672113 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 4365407 4365694 -213671464 - L1ME3A LINE L1 -341 5829 5521 2168 112 0 7 chr3 4365698 4366002 -213671156 + AluY SINE Alu 1 302 -9 4676 76 8 2 chr3 4366014 4366646 -213670512 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 4367818 4367876 -213669282 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 4367943 4368081 -213669077 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 4368093 4368227 -213668931 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 4368470 4368648 -213668510 + FAM SINE Alu 1 174 -1 21 0 0 0 chr3 4369734 4369755 -213667403 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 4370676 4370871 -213666287 + MIR SINE MIR 59 261 -1 3676 197 37 26 chr3 4371467 4372622 -213664536 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 4372658 4372721 -213664437 + L1MB7 LINE L1 6112 6174 -10 292 231 107 39 chr3 4373638 4373894 -213663264 - L1ME4a LINE L1 -220 5901 5536 457 343 122 34 chr3 4374549 4375016 -213662142 + L3 LINE CR1 1057 1564 -13 2292 95 10 3 chr3 4375161 4375465 -213661693 + AluSq SINE Alu 1 306 -7 814 231 177 3 chr3 4375465 4375759 -213661399 + MLT1I LTR MaLR 65 409 0 306 323 60 26 chr3 4375905 4376403 -213660755 + L1MDa LINE L1 1400 1875 -868 21 0 0 0 chr3 4376476 4376497 -213660661 + AT_rich Low_complexity Low_complexity 1 21 0 229 380 71 5 chr3 4377152 4377336 -213659822 + L2 LINE L2 3118 3313 0 2121 123 0 13 chr3 4378299 4378600 -213658558 + AluSg SINE Alu 1 297 -13 2114 183 47 10 chr3 4378700 4379105 -213658053 + MSTB LTR MaLR 1 420 -6 3666 119 60 28 chr3 4379124 4379738 -213657420 - MER51A LTR ERV1 0 634 1 1665 171 32 20 chr3 4379784 4380029 -213657129 - L1MB7 LINE L1 -15 6169 5917 2471 105 19 8 chr3 4380029 4380400 -213656758 - THE1C LTR MaLR 0 375 1 1665 171 32 20 chr3 4380400 4380498 -213656660 - L1MB7 LINE L1 -267 5917 5822 206 209 90 45 chr3 4380638 4380705 -213656453 - MIR SINE MIR -88 174 105 420 269 88 18 chr3 4380952 4381123 -213656035 - Charlie8 DNA MER1_type -2161 256 74 312 310 44 0 chr3 4381411 4381524 -213655634 - L2 LINE L2 -1 3271 3154 419 242 167 0 chr3 4381948 4382068 -213655090 + MLT1H LTR MaLR 405 544 -5 342 0 0 0 chr3 4382138 4382176 -213654982 + (TC)n Simple_repeat Simple_repeat 2 39 0 270 0 0 0 chr3 4382175 4382205 -213654953 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1036 200 16 5 chr3 4382213 4382403 -213654755 - AluJb SINE Alu -32 280 89 1428 216 71 31 chr3 4382685 4383134 -213654024 + MLT1C LTR MaLR 1 467 0 2084 142 3 0 chr3 4485637 4485948 -213551210 + AluSx SINE Alu 1 312 0 200 262 98 0 chr3 4486777 4486838 -213550320 + MIR SINE MIR 80 146 -116 8443 125 6 17 chr3 4487579 4488961 -213548197 - L1P LINE L1 -795 5351 3985 180 111 0 0 chr3 4490467 4490494 -213546664 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 243 377 57 0 chr3 4490687 4490809 -213546349 + MIR SINE MIR 39 167 -95 277 333 44 9 chr3 4490935 4491049 -213546109 - MIR3 SINE MIR -24 184 67 1136 242 79 0 chr3 4491084 4491427 -213545731 + L1MD3 LINE L1 3586 3955 -2191 646 193 28 7 chr3 4491456 4491601 -213545557 + MLT2D LTR ERVL 71 218 -196 1404 252 97 11 chr3 4491604 4492143 -213545015 + L1MD3 LINE L1 4776 5360 -786 1495 198 104 18 chr3 4492146 4493203 -213543955 + L1MD3 LINE L1 5464 6428 -1567 321 26 0 0 chr3 4493203 4493241 -213543917 + (CA)n Simple_repeat Simple_repeat 2 39 0 1495 198 104 18 chr3 4493241 4494243 -213542915 + L1MD3 LINE L1 6428 7995 0 336 247 216 6 chr3 4494256 4494418 -213542740 + MIR SINE MIR 67 262 0 291 350 8 8 chr3 4495372 4495489 -213541669 - L2 LINE L2 -6 3266 3150 15404 48 7 2 chr3 4496218 4498931 -213538227 - L1PA5 LINE L1 0 6154 3431 306 125 21 0 chr3 4498981 4499029 -213538129 - MADE1 DNA Mariner 0 80 32 215 318 20 80 chr3 4499977 4500128 -213537030 + MIR SINE MIR 10 151 -111 765 222 13 0 chr3 4500170 4500323 -213536835 + MER63A DNA MER1_type 50 204 -6 202 212 23 23 chr3 4502941 4502989 -213534169 - MIR SINE MIR -106 102 54 471 226 144 5 chr3 4504083 4504278 -213532880 - L1M4 LINE L1 -846 5300 5079 688 182 25 19 chr3 4504303 4504462 -213532696 + MER33 DNA MER1_type 15 174 -150 256 238 48 0 chr3 4504468 4504573 -213532585 - L1MCc LINE L1 -4910 652 543 2259 112 3 0 chr3 4504604 4504916 -213532242 - AluSq SINE Alu 0 313 1 1253 281 89 53 chr3 4505615 4505725 -213531433 + MLT1E3 LTR MaLR 1 106 -518 1442 169 93 37 chr3 4505725 4506080 -213531078 + THE1C LTR MaLR 1 375 0 1253 281 89 53 chr3 4506080 4506567 -213530591 + MLT1E3 LTR MaLR 106 619 -5 32 26 0 0 chr3 4506635 4506674 -213530484 + AT_rich Low_complexity Low_complexity 1 39 0 351 372 51 60 chr3 4507597 4508011 -213529147 - L2 LINE L2 -6 3266 2857 604 236 106 25 chr3 4508068 4508305 -213528853 + MER5C DNA MER1_type 1 256 -68 293 288 254 0 chr3 4509416 4509558 -213527600 + MIR SINE MIR 37 213 -49 320 254 56 16 chr3 4509650 4509776 -213527382 + MER104 DNA Tc2 26 156 -24 2290 113 0 3 chr3 4509952 4510261 -213526897 - AluSg SINE Alu -2 308 1 444 125 48 19 chr3 4510263 4510367 -213526791 - L1PA8 LINE L1 0 6172 6066 246 32 0 0 chr3 4510812 4510843 -213526315 + (CA)n Simple_repeat Simple_repeat 1 31 0 2120 113 0 26 chr3 4511648 4511957 -213525201 - AluSx SINE Alu -11 301 1 2360 71 3 0 chr3 4512396 4512704 -213524454 + AluY SINE Alu 1 309 -2 727 131 37 0 chr3 4513351 4513458 -213523700 - MER4B LTR ERV1 0 610 500 21 36 0 0 chr3 4513681 4513709 -213523449 + AT_rich Low_complexity Low_complexity 1 28 0 2854 204 60 48 chr3 4513793 4514675 -213522483 - L1MC4 LINE L1 -214 7828 6936 1792 241 97 11 chr3 4514740 4515378 -213521780 - L1M4 LINE L1 -979 5167 4475 1253 295 45 14 chr3 4515443 4515884 -213521274 - L1MCc LINE L1 -5589 481 27 441 229 10 0 chr3 4516206 4516302 -213520856 + MER5A DNA MER1_type 10 106 -83 1669 138 160 9 chr3 4517873 4518191 -213518967 - MSTA LTR MaLR 0 428 63 210 306 178 22 chr3 4518231 4518411 -213518747 + L2 LINE L2 2889 3096 -217 974 241 106 20 chr3 4518441 4518744 -213518414 - MLT2D LTR ERVL -8 406 78 317 309 0 73 chr3 4518854 4518990 -213518168 + L2 LINE L2 3167 3292 -21 2101 122 0 4 chr3 4519019 4519298 -213517860 - AluSx SINE Alu -30 282 5 379 110 132 55 chr3 4519482 4519573 -213517585 + MER4A LTR ERV1 1 98 -566 1197 147 96 97 chr3 4519573 4519931 -213517227 + MER4A LTR ERV1 261 664 0 1973 158 24 3 chr3 4520198 4520704 -213516454 + L1M1 LINE L1 5072 5585 -720 1753 168 14 0 chr3 4520779 4521065 -213516093 + LTR10B LTR ERV1 258 547 0 1049 249 89 4 chr3 4521065 4521334 -213515824 + LTR10B-int LTR ERV1 5 296 -6353 * 10369 244 19 32 chr3 4521330 4524572 -213512586 + BaEV-int LTR ERV1 4185 6649 0 1608 205 14 7 chr3 4524647 4524935 -213512223 + LTR10B LTR ERV1 258 547 0 4163 114 35 31 chr3 4524935 4525332 -213511826 + L1MA2 LINE L1 5582 5985 -319 2090 125 26 0 chr3 4525332 4525636 -213511522 + AluSp SINE Alu 1 312 -1 4163 114 35 31 chr3 4525636 4525958 -213511200 + L1MA2 LINE L1 5985 6304 0 311 304 61 9 chr3 4526250 4526365 -213510793 - MIR3 SINE MIR -54 154 34 316 257 81 0 chr3 4526427 4526501 -213510657 - L2 LINE L2 -1 3312 3233 1995 154 3 0 chr3 4527689 4528000 -213509158 + AluSx SINE Alu 1 312 0 364 235 163 60 chr3 4528270 4528436 -213508722 - MER20 DNA MER1_type -27 192 10 498 114 0 0 chr3 4528870 4528940 -213508218 - AluJ/FRAM SINE Alu -17 295 226 316 288 62 0 chr3 4529733 4529893 -213507265 + L1MC4a LINE L1 4890 5059 -1087 425 355 84 12 chr3 4530073 4530561 -213506597 + L1MC4a LINE L1 5308 5830 -1978 267 167 139 0 chr3 4530962 4531034 -213506124 - MIR SINE MIR -3 259 178 270 306 41 10 chr3 4532846 4532944 -213504214 + MLT1L LTR MaLR 165 265 -350 220 304 43 0 chr3 4534164 4534233 -213502925 - L2 LINE L2 0 3272 3201 564 56 0 0 chr3 4534457 4534529 -213502629 + (GGAA)n Simple_repeat Simple_repeat 4 75 0 26 0 0 0 chr3 4535833 4535859 -213501299 + AT_rich Low_complexity Low_complexity 1 26 0 497 292 49 15 chr3 4535863 4536130 -213501028 - L1MC5 LINE L1 -212 7749 7474 228 226 19 0 chr3 4536167 4536220 -213500938 + L2 LINE L2 3217 3270 -2 206 291 0 0 chr3 4536531 4536586 -213500572 + L2 LINE L2 3244 3298 -15 776 329 80 6 chr3 4538606 4538968 -213498190 + LTR16C LTR ERVL 96 484 -7 357 233 0 29 chr3 4540920 4541023 -213496135 - LTR67 LTR ERVL -6 551 452 322 286 32 84 chr3 4543014 4543168 -213493990 + MIR3 SINE MIR 36 181 -27 382 305 241 12 chr3 4544310 4544559 -213492599 + L2 LINE L2 3006 3311 -2 228 67 0 0 chr3 4544559 4544589 -213492569 + (TGGA)n Simple_repeat Simple_repeat 4 33 0 225 296 21 63 chr3 4544828 4544970 -213492188 - L3b LINE CR1 -131 1452 1317 21 0 0 0 chr3 4545293 4545314 -213491844 + AT_rich Low_complexity Low_complexity 1 21 0 237 139 0 0 chr3 4545567 4545610 -213491548 + (CA)n Simple_repeat Simple_repeat 2 44 0 6991 51 38 0 chr3 4545733 4546693 -213490465 - L1PA6 LINE L1 -7 6147 5184 896 230 5 5 chr3 4546741 4546928 -213490230 + MER58A DNA MER1_type 34 220 -4 8009 13 0 0 chr3 4547241 4548843 -213488315 - L1HS LINE L1 0 6155 4554 453 330 76 21 chr3 4548911 4549202 -213487956 + L2 LINE L2 2159 2465 -849 618 291 180 26 chr3 4549202 4549634 -213487524 - L1MEd LINE L1 -4908 1211 838 1582 110 12 31 chr3 4549634 4549888 -213487270 - AluSq SINE Alu 0 313 65 618 291 180 26 chr3 4549888 4549959 -213487199 - L1MEd LINE L1 -5281 838 779 21 0 0 0 chr3 4550025 4550046 -213487112 + AT_rich Low_complexity Low_complexity 1 21 0 673 223 0 0 chr3 4550091 4550212 -213486946 - FLAM_A SINE Alu -12 121 1 398 305 123 57 chr3 4550284 4550800 -213486358 + L2 LINE L2 2683 3239 -74 647 183 8 16 chr3 4550800 4550926 -213486232 - FLAM_A SINE Alu -4 129 5 398 305 123 57 chr3 4550926 4550994 -213486164 + L2 LINE L2 3239 3301 -12 201 74 0 0 chr3 4551847 4551874 -213485284 + (TA)n Simple_repeat Simple_repeat 1 27 0 1062 139 41 0 chr3 4551874 4552046 -213485112 - AluSg/x SINE Alu 0 312 134 204 350 122 50 chr3 4552085 4552265 -213484893 - MIR SINE MIR -50 212 20 253 282 118 47 chr3 4552636 4552806 -213484352 + MER5A DNA MER1_type 7 188 -1 622 286 104 50 chr3 4554448 4554850 -213482308 + HAL1b LINE L1 344 574 -774 22 35 0 0 chr3 4555417 4555446 -213481712 + AT_rich Low_complexity Low_complexity 1 29 0 479 183 104 24 chr3 4555654 4555818 -213481340 - MER104 DNA MER2_type -3 177 1 318 185 8 100 chr3 4556486 4556616 -213480542 + L1ME4a LINE L1 5966 6083 -38 6700 126 20 53 chr3 4556662 4557934 -213479224 + Tigger3b DNA MER2_type 3 1231 0 302 240 0 94 chr3 4557934 4558030 -213479128 + L1MC4 LINE L1 6617 6703 -1339 243 0 0 0 chr3 4558030 4558057 -213479101 + (TA)n Simple_repeat Simple_repeat 1 27 0 696 183 72 20 chr3 4558588 4558741 -213478417 + MER5A DNA MER1_type 1 161 -28 369 75 0 0 chr3 4558861 4558914 -213478244 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 71 0 0 chr3 4559276 4559318 -213477840 - L1MA10 LINE L1 -10 6324 6283 378 165 13 13 chr3 4559318 4559397 -213477761 + L1MB1 LINE L1 6004 6082 -107 677 159 0 0 chr3 4559461 4559568 -213477590 - AluJb SINE Alu -205 107 1 25 0 0 0 chr3 4559827 4559852 -213477306 + AT_rich Low_complexity Low_complexity 1 25 0 1482 122 215 4 chr3 4559888 4560134 -213477024 + AluSg1 SINE Alu 1 298 -11 549 326 73 55 chr3 4560159 4560542 -213476616 + L2 LINE L2 2919 3308 -5 899 203 115 5 chr3 4560567 4560759 -213476399 - MER58A DNA MER1_type -1 223 11 284 93 0 0 chr3 4560932 4560975 -213476183 - MADE1 DNA Mariner -37 43 1 1279 167 8 16 chr3 4560975 4561232 -213475926 - L1MC3 LINE L1 -24 7761 7507 195 358 20 54 chr3 4561433 4561581 -213475577 + MIR SINE MIR 70 212 -50 925 183 30 35 chr3 4562418 4562620 -213474538 + MER3 DNA MER1_type 9 209 0 448 281 191 20 chr3 4563258 4563457 -213473701 - MIR SINE MIR -6 256 24 528 286 5 77 chr3 4563903 4564167 -213472991 - MIR SINE MIR -8 254 13 195 250 0 0 chr3 4564340 4564380 -213472778 - MIR SINE MIR -73 135 96 438 20 0 0 chr3 4565984 4566035 -213471123 + (CA)n Simple_repeat Simple_repeat 2 52 0 398 309 172 0 chr3 4566813 4567017 -213470141 - MIR SINE MIR -6 256 18 2164 57 4 0 chr3 4568027 4568349 -213468809 - AluY SINE Alu 0 323 1 696 242 55 0 chr3 4568489 4568654 -213468504 + MER5A DNA MER1_type 15 188 -1 2435 52 10 0 chr3 4568883 4569191 -213467967 - AluY SINE Alu 0 311 1 273 128 0 0 chr3 4571462 4571509 -213465649 + (TTCC)n Simple_repeat Simple_repeat 1 47 0 1817 173 7 0 chr3 4571798 4572098 -213465060 - AluJb SINE Alu -10 302 1 809 284 103 36 chr3 4572799 4573923 -213463235 - L1ME LINE L1 -486 5684 4487 5486 176 22 9 chr3 4573934 4575434 -213461724 - L1MA4 LINE L1 0 6482 4967 657 151 0 0 chr3 4575434 4575553 -213461605 + CT-rich Low_complexity Low_complexity 4 122 0 1716 162 22 22 chr3 4575578 4575948 -213461210 - L1MA4 LINE L1 -1355 4973 4604 2097 121 0 0 chr3 4575950 4576251 -213460907 - AluSg SINE Alu 0 301 1 9000 119 6 16 chr3 4576259 4578498 -213458660 - L1PA10 LINE L1 0 6168 3942 7882 180 21 28 chr3 4578506 4580174 -213456984 - L1PA10 LINE L1 -3571 2575 920 3955 171 24 13 chr3 4580176 4581016 -213456142 - L1MA4 LINE L1 -1701 4627 3779 2665 143 56 78 chr3 4581002 4581256 -213455902 - L1MA4 LINE L1 -4065 1263 1005 * 225 0 48 48 chr3 4581256 4581298 -213455860 + (TTTG)n Simple_repeat Simple_repeat 2 43 0 1728 176 4 4 chr3 4581299 4581578 -213455580 - AluJb SINE Alu -33 279 1 2665 143 56 78 chr3 4581578 4581707 -213455451 - L1MA4 LINE L1 -4323 1005 875 1622 196 0 19 chr3 4581707 4582024 -213455134 - AluJb SINE Alu -1 311 1 2665 143 56 78 chr3 4582024 4582397 -213454761 - L1MA4 LINE L1 -4453 875 680 539 202 25 10 chr3 4582398 4582662 -213454496 + CT-rich Low_complexity Low_complexity 1 267 0 3719 196 38 6 chr3 4582664 4583352 -213453806 - L1MA4 LINE L1 -4609 719 10 24 53 0 0 chr3 4583486 4583524 -213453634 + AT_rich Low_complexity Low_complexity 1 38 0 507 318 74 56 chr3 4583525 4584063 -213453095 - L1MEd LINE L1 -5306 813 266 343 214 48 68 chr3 4584155 4584199 -213452959 - MER5A DNA MER1_type -77 112 69 312 27 0 0 chr3 4584199 4584236 -213452922 + (TG)n Simple_repeat Simple_repeat 2 38 0 343 214 48 68 chr3 4584236 4584294 -213452864 - MER5A DNA MER1_type -120 69 12 190 205 26 0 chr3 4584714 4584753 -213452405 + L2 LINE L2 3221 3260 -12 379 296 51 23 chr3 4584759 4584935 -213452223 + MIR SINE MIR 17 197 -65 21 0 0 0 chr3 4585015 4585036 -213452122 + AT_rich Low_complexity Low_complexity 1 21 0 277 277 0 0 chr3 4585117 4585129 -213452029 + MER3 DNA MER1_type 37 48 -161 811 212 0 32 chr3 4585129 4585200 -213451958 - MER3 DNA MER1_type -1 208 136 1564 161 94 25 chr3 4585200 4585486 -213451672 + AluJb SINE Alu 1 306 -6 811 212 0 32 chr3 4585486 4585603 -213451555 - MER3 DNA MER1_type -73 136 26 260 174 0 0 chr3 4586934 4586980 -213450178 + L2 LINE L2 3223 3268 -4 2029 106 0 0 chr3 4589125 4589389 -213447769 + AluY SINE Alu 32 295 -16 23 0 0 0 chr3 4590105 4590128 -213447030 + AT_rich Low_complexity Low_complexity 1 23 0 220 302 94 10 chr3 4590820 4590916 -213446242 + L2 LINE L2 3206 3309 -4 491 218 73 8 chr3 4592263 4592387 -213444771 - MER39 LTR ERV1 -575 132 1 535 288 23 28 chr3 4592392 4592569 -213444589 + MIR SINE MIR 79 254 -8 791 242 102 25 chr3 4594330 4594837 -213442321 - MLT1G1 LTR MaLR -1 589 1 744 296 9 5 chr3 4595116 4595332 -213441826 + MIR SINE MIR 46 262 0 847 308 83 11 chr3 4596297 4596840 -213440318 + MLT2F LTR ERVL 1 663 0 2102 138 21 0 chr3 4596953 4597278 -213439880 - Tigger2a DNA MER2_type 0 434 103 1208 118 0 0 chr3 4597320 4597490 -213439668 + AluY SINE Alu 132 301 -10 7235 40 15 0 chr3 4597493 4598458 -213438700 + L1PA5 LINE L1 5175 6152 -2 613 179 0 8 chr3 4598484 4598601 -213438557 - Tigger2a DNA MER2_type -317 117 2 678 314 105 32 chr3 4598640 4599115 -213438043 + L2 LINE L2 2804 3313 0 361 317 0 19 chr3 4600280 4600384 -213436774 + L2 LINE L2 3154 3255 -17 539 276 0 6 chr3 4601367 4601523 -213435635 - L1ME3 LINE L1 -5 6157 6003 462 261 48 35 chr3 4601537 4601847 -213435311 - L1MEc LINE L1 -2803 3623 3310 2036 207 22 12 chr3 4601852 4602258 -213434900 + MER47B DNA MER2_type 1 410 -8 2904 147 36 8 chr3 4602264 4602767 -213434391 + Tigger3(Golem) DNA MER2_type 2513 3029 0 303 121 11 17 chr3 4602767 4602835 -213434323 - L1MA7 LINE L1 -187 6104 6038 387 297 10 35 chr3 4602841 4603043 -213434115 - L1MCa LINE L1 -1923 4503 4307 464 356 25 22 chr3 4603176 4603493 -213433665 - L1MCa LINE L1 -2222 4204 3887 355 293 33 14 chr3 4603528 4603719 -213433439 - L1MCa LINE L1 -2697 3729 3534 1163 158 51 111 chr3 4603783 4604140 -213433018 + MER21A LTR ERV1 1 365 -498 467 221 116 53 chr3 4604297 4604600 -213432558 - L1MCa LINE L1 -4801 1625 1304 30 27 0 0 chr3 4604645 4604682 -213432476 + AT_rich Low_complexity Low_complexity 1 37 0 453 229 46 106 chr3 4604739 4605041 -213432117 + MLT1H LTR MaLR 228 511 -38 399 315 51 30 chr3 4605093 4605328 -213431830 - L1MEc LINE L1 -4277 2330 2091 728 211 65 60 chr3 4605353 4605400 -213431758 + MER58A DNA MER1_type 37 82 -2338 1102 209 73 48 chr3 4605400 4605754 -213431404 + MLT1A1 LTR MaLR 1 363 -2 728 211 65 60 chr3 4605754 4605891 -213431267 + MER58A DNA MER1_type 82 222 -2 492 276 120 31 chr3 4605957 4606497 -213430661 - L1MEc LINE L1 -4732 1694 1107 1640 180 23 3 chr3 4606636 4606936 -213430222 - AluJb SINE Alu -6 306 1 317 348 62 12 chr3 4606968 4607129 -213430029 - L1MEc LINE L1 -6013 594 426 418 51 0 17 chr3 4607389 4607448 -213429710 + (CA)n Simple_repeat Simple_repeat 2 59 0 1708 191 0 3 chr3 4607644 4607948 -213429210 - AluJo SINE Alu -9 303 1 184 320 26 26 chr3 4608747 4608825 -213428333 - MIR SINE MIR -26 236 159 367 225 0 0 chr3 4609277 4609348 -213427810 - MIR SINE MIR -115 147 77 280 230 27 0 chr3 4609603 4609677 -213427481 + MIR SINE MIR 184 259 -3 225 368 123 0 chr3 4609846 4609960 -213427198 - L2 LINE L2 -8 3264 3137 27 0 0 0 chr3 4609980 4610007 -213427151 + AT_rich Low_complexity Low_complexity 1 27 0 2602 125 0 0 chr3 4610308 4610683 -213426475 - THE1C LTR MaLR 0 375 1 3264 247 74 44 chr3 4613116 4613980 -213423178 + L1MC4 LINE L1 6459 7371 -671 1228 202 132 0 chr3 4613980 4614238 -213422920 - AluJo SINE Alu -7 295 4 3264 247 74 44 chr3 4614238 4614594 -213422564 + L1MC4 LINE L1 7371 7715 -327 395 303 30 30 chr3 4615038 4615203 -213421955 + MIR SINE MIR 9 173 -89 2002 117 3 36 chr3 4615400 4615709 -213421449 - AluSx SINE Alu -13 299 1 297 356 0 0 chr3 4615729 4615816 -213421342 - L2 LINE L2 0 3313 3227 528 312 12 18 chr3 4615969 4616139 -213421019 - MIR SINE MIR -65 197 29 214 267 120 13 chr3 4617150 4617225 -213419933 + MER5A DNA MER1_type 34 116 -73 10649 96 9 4 chr3 4617530 4619848 -213417310 - L1PA7 LINE L1 -13 6141 3815 6746 112 8 2 chr3 4619848 4620888 -213416270 - L1PA7 LINE L1 -2751 3395 2350 23900 98 15 8 chr3 4620889 4625267 -213411891 - L1PA7 LINE L1 0 6469 2067 3542 113 12 0 chr3 4625273 4625775 -213411383 - L1PA7 LINE L1 -5262 1199 692 272 297 36 27 chr3 4625775 4625886 -213411272 - MIR SINE MIR -61 147 36 1845 144 34 42 chr3 4627087 4627497 -213409661 - L1MA4 LINE L1 0 6300 5894 597 165 0 10 chr3 4627497 4627600 -213409558 + L1 LINE L1 4871 4972 -1174 239 62 125 21 chr3 4627600 4627648 -213409510 - MLT2A2 LTR ERVL 0 453 401 369 158 0 0 chr3 4627649 4627731 -213409427 + (TA)n Simple_repeat Simple_repeat 2 83 0 2640 72 0 0 chr3 4627733 4628078 -213409080 + HERVL-A1 LTR ERVL 5310 5654 0 2688 108 23 8 chr3 4628078 4628476 -213408682 + MLT2A1 LTR ERVL 1 404 -40 485 224 11 17 chr3 4628487 4628666 -213408492 + (TA)n Simple_repeat Simple_repeat 2 179 0 41160 70 12 5 chr3 4628823 4633643 -213403515 - HERVL LTR ERVL -331 5323 465 2027 135 26 3 chr3 4633643 4633947 -213403211 + AluSq SINE Alu 1 311 -2 41160 70 12 5 chr3 4633947 4634415 -213402743 - HERVL LTR ERVL -5189 465 1 323 57 0 22 chr3 4634415 4634468 -213402690 - MLT2A2 LTR ERVL 0 453 411 190 265 0 20 chr3 4635163 4635212 -213401946 - L2 LINE L2 -16 3256 3209 2435 52 10 0 chr3 4635673 4635981 -213401177 + AluY SINE Alu 1 311 0 696 242 55 0 chr3 4636210 4636375 -213400783 - MER5A DNA MER1_type -1 188 15 2165 57 4 0 chr3 4636515 4636837 -213400321 + AluY SINE Alu 1 323 0 398 309 172 0 chr3 4637847 4638051 -213399107 + MIR SINE MIR 18 256 -6 438 20 0 0 chr3 4638829 4638880 -213398278 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 250 0 0 chr3 4640484 4640524 -213396634 + MIR SINE MIR 96 135 -73 528 286 5 77 chr3 4640697 4640961 -213396197 + MIR SINE MIR 13 254 -8 448 281 191 20 chr3 4641407 4641606 -213395552 + MIR SINE MIR 24 256 -6 925 183 30 35 chr3 4642244 4642446 -213394712 - MER3 DNA MER1_type 0 209 9 195 358 20 54 chr3 4643283 4643431 -213393727 - MIR SINE MIR -50 212 70 1279 167 8 16 chr3 4643632 4643889 -213393269 + L1MC3 LINE L1 7507 7761 -24 284 93 0 0 chr3 4643889 4643932 -213393226 + MADE1 DNA Mariner 1 43 -37 899 203 115 5 chr3 4644105 4644297 -213392861 + MER58A DNA MER1_type 11 223 -1 549 326 73 55 chr3 4644322 4644705 -213392453 - L2 LINE L2 -5 3308 2919 1482 122 215 4 chr3 4644730 4644976 -213392182 - AluSg1 SINE Alu -11 298 1 25 0 0 0 chr3 4645012 4645037 -213392121 + AT_rich Low_complexity Low_complexity 1 25 0 677 159 0 0 chr3 4645296 4645403 -213391755 + AluJb SINE Alu 1 107 -205 392 161 12 12 chr3 4645467 4645548 -213391610 - L1MB1 LINE L1 -107 6082 6002 312 71 0 0 chr3 4645548 4645588 -213391570 + L1MA10 LINE L1 6283 6324 -10 369 75 0 0 chr3 4645950 4646003 -213391155 + (TG)n Simple_repeat Simple_repeat 2 54 0 696 183 72 20 chr3 4646123 4646276 -213390882 - MER5A DNA MER1_type -28 161 1 243 0 0 0 chr3 4646807 4646834 -213390324 + (TA)n Simple_repeat Simple_repeat 1 27 0 302 240 0 94 chr3 4646834 4646930 -213390228 - L1MC4 LINE L1 -1339 6703 6617 6700 126 20 53 chr3 4646930 4648202 -213388956 - Tigger3b DNA MER2_type 0 1231 3 318 185 8 100 chr3 4648248 4648378 -213388780 - L1ME4a LINE L1 -38 6083 5966 479 183 104 24 chr3 4649046 4649210 -213387948 + MER104 DNA MER2_type 1 177 -3 22 35 0 0 chr3 4649418 4649447 -213387711 + AT_rich Low_complexity Low_complexity 1 29 0 622 286 104 50 chr3 4650014 4650416 -213386742 - HAL1b LINE L1 -774 574 344 253 282 118 47 chr3 4652058 4652228 -213384930 - MER5A DNA MER1_type -1 188 7 204 350 122 50 chr3 4652599 4652779 -213384379 + MIR SINE MIR 20 212 -50 1062 139 41 0 chr3 4652818 4652990 -213384168 + AluSg/x SINE Alu 134 312 0 201 74 0 0 chr3 4652990 4653017 -213384141 + (TA)n Simple_repeat Simple_repeat 2 28 0 425 306 123 56 chr3 4653868 4653936 -213383222 - L2 LINE L2 -12 3301 3239 647 183 8 16 chr3 4653936 4654062 -213383096 + FLAM_A SINE Alu 5 129 -4 425 306 123 56 chr3 4654062 4654577 -213382581 - L2 LINE L2 -74 3239 2683 673 223 0 0 chr3 4654649 4654770 -213382388 + FLAM_A SINE Alu 1 121 -12 21 0 0 0 chr3 4654815 4654836 -213382322 + AT_rich Low_complexity Low_complexity 1 21 0 618 291 180 26 chr3 4654902 4654973 -213382185 + L1MEd LINE L1 779 838 -5281 1582 110 12 31 chr3 4654973 4655227 -213381931 + AluSq SINE Alu 65 313 0 618 291 180 26 chr3 4655227 4655659 -213381499 + L1MEd LINE L1 838 1211 -4908 453 330 76 21 chr3 4655659 4655950 -213381208 - L2 LINE L2 -849 2465 2159 8050 12 0 0 chr3 4656018 4657620 -213379538 + L1HS LINE L1 4554 6155 0 934 226 5 5 chr3 4657931 4658121 -213379037 - MER58A DNA MER1_type -1 223 34 31 0 0 0 chr3 4658729 4658760 -213378398 + AT_rich Low_complexity Low_complexity 1 31 0 2081 105 4 0 chr3 4658779 4659055 -213378103 - AluSq SINE Alu -36 277 1 2219 201 62 67 chr3 4659134 4659717 -213377441 + L1MDa LINE L1 26 605 -5935 39 50 0 0 chr3 4659817 4659877 -213377281 + AT_rich Low_complexity Low_complexity 1 60 0 53 30 0 0 chr3 4660842 4660909 -213376249 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr3 4661288 4661320 -213375838 + AT_rich Low_complexity Low_complexity 1 32 0 237 196 0 0 chr3 4661989 4662045 -213375113 + (CACCAT)n Simple_repeat Simple_repeat 4 59 0 329 275 25 0 chr3 4662542 4662622 -213374536 - L2 LINE L2 0 3313 3232 1046 113 94 6 chr3 4663109 4663269 -213373889 - AluSq SINE Alu -11 302 129 21 0 0 0 chr3 4663643 4663664 -213373494 + AT_rich Low_complexity Low_complexity 1 21 0 625 264 121 5 chr3 4663948 4664403 -213372755 - MLT1K LTR MaLR -6 582 24 384 251 106 67 chr3 4665330 4665509 -213371649 - MIR SINE MIR 0 262 77 213 343 14 0 chr3 4665800 4665870 -213371288 + L2 LINE L2 3200 3270 -2 297 250 29 0 chr3 4667736 4667804 -213369354 - MIR SINE MIR -8 254 185 258 347 88 7 chr3 4667845 4667992 -213369166 + MIR3 SINE MIR 38 196 -12 1774 152 0 71 chr3 4668087 4668410 -213368748 + AluJb SINE Alu 1 300 -12 291 259 19 83 chr3 4668545 4668578 -213368580 - MER102a DNA MER1_type -1099 318 284 2127 177 50 17 chr3 4668578 4668996 -213368162 + MSTB1 LTR MaLR 1 432 0 291 259 19 83 chr3 4668996 4669070 -213368088 - MER102a DNA MER1_type -1133 284 218 1979 129 0 36 chr3 4669224 4669533 -213367625 - AluSx SINE Alu -14 298 1 978 116 0 0 chr3 4669545 4669674 -213367484 - AluSq SINE Alu -183 129 1 180 0 0 0 chr3 4670597 4670617 -213366541 + (T)n Simple_repeat Simple_repeat 1 20 0 28 0 0 0 chr3 4671600 4671628 -213365530 + AT_rich Low_complexity Low_complexity 1 28 0 457 315 99 9 chr3 4672203 4672425 -213364733 - MIR SINE MIR -15 247 6 272 247 13 13 chr3 4672928 4673005 -213364153 + MLT1I LTR MaLR 329 405 -4 401 319 14 35 chr3 4674664 4674808 -213362350 + MER91A DNA MER1_type 2 142 -54 200 304 0 18 chr3 4674856 4674912 -213362246 + MER91A DNA MER1_type 133 187 -3 342 67 0 0 chr3 4675295 4675340 -213361818 + (A)n Simple_repeat Simple_repeat 1 45 0 243 306 194 0 chr3 4675499 4675597 -213361561 + L2 LINE L2 3197 3313 0 624 284 74 16 chr3 4675881 4676124 -213361034 - MIR SINE MIR 0 262 6 446 339 27 27 chr3 4676638 4676821 -213360337 + MER5A DNA MER1_type 2 184 -5 336 255 20 41 chr3 4676842 4676940 -213360218 - MIR3 SINE MIR -37 171 76 201 356 7 68 chr3 4677544 4677690 -213359468 - MIR3 SINE MIR -13 195 59 229 278 11 100 chr3 4677770 4677860 -213359298 - MIR SINE MIR -130 132 51 1467 206 4 4 chr3 4678862 4679129 -213358029 + AluJb SINE Alu 30 296 -16 2012 144 0 0 chr3 4679755 4680046 -213357112 - AluSx SINE Alu -11 301 11 22 0 0 0 chr3 4680649 4680671 -213356487 + AT_rich Low_complexity Low_complexity 1 22 0 1941 192 11 8 chr3 4681321 4681685 -213355473 - MLT1A1 LTR MaLR 0 365 1 319 360 97 23 chr3 4681860 4682160 -213354998 + L2 LINE L2 1735 2056 -1258 347 329 0 0 chr3 4682245 4682324 -213354834 - MER91A DNA MER1_type -116 80 2 288 260 84 58 chr3 4682482 4682636 -213354522 + HAL1b LINE L1 750 907 -441 263 374 39 39 chr3 4682954 4683310 -213353848 - L2 LINE L2 -595 2719 2364 24 0 0 0 chr3 4683946 4683970 -213353188 + AT_rich Low_complexity Low_complexity 1 24 0 1206 283 45 21 chr3 4684000 4684424 -213352734 - MLT1J1 LTR MaLR -11 435 2 267 31 0 0 chr3 4684649 4684681 -213352477 + (CA)n Simple_repeat Simple_repeat 1 32 0 3023 162 0 6 chr3 4685232 4685721 -213351437 + MER66B LTR ERV1 1 486 0 2078 121 0 3 chr3 4686064 4686370 -213350788 - AluSx SINE Alu 0 307 3 2389 69 13 3 chr3 4686419 4686722 -213350436 - AluSg SINE Alu -4 306 1 376 244 12 0 chr3 4686802 4686888 -213350270 + MLT1J1 LTR MaLR 240 326 -120 640 276 82 9 chr3 4686943 4687321 -213349837 - MLT1J1 LTR MaLR -13 424 1 335 335 112 28 chr3 4688006 4688221 -213348937 + MIR SINE MIR 30 262 0 1572 184 10 16 chr3 4688436 4688727 -213348431 + AluJo SINE Alu 1 291 -21 186 43 0 0 chr3 4688727 4688750 -213348408 + (GA)n Simple_repeat Simple_repeat 2 24 0 1572 184 10 16 chr3 4688750 4688763 -213348395 + AluJo SINE Alu 291 303 -9 25 90 0 0 chr3 4689288 4689355 -213347803 + AT_rich Low_complexity Low_complexity 1 67 0 352 338 7 28 chr3 4689804 4689946 -213347212 + MIR SINE MIR 8 146 -116 241 314 183 22 chr3 4690134 4690271 -213346887 + MLT1J2 LTR MaLR 254 412 -38 23 0 0 0 chr3 4691401 4691424 -213345734 + AT_rich Low_complexity Low_complexity 1 23 0 36 53 0 0 chr3 4691552 4691609 -213345549 + AT_rich Low_complexity Low_complexity 1 57 0 4216 148 7 44 chr3 4691683 4692501 -213344657 - L1PA16 LINE L1 -2 6164 5377 273 139 18 4 chr3 4692524 4692581 -213344577 + AluJo SINE Alu 85 136 -166 561 248 83 0 chr3 4692584 4692729 -213344429 + FAM SINE Alu 1 157 -18 3974 144 30 7 chr3 4692745 4693482 -213343676 - Tigger3b DNA MER2_type -477 754 1 236 318 34 34 chr3 4693535 4693623 -213343535 + MIR SINE MIR 32 119 -89 639 191 79 20 chr3 4693653 4693805 -213343353 + MLT1A2 LTR MaLR 1 161 -213 414 0 0 0 chr3 4693826 4693872 -213343286 + (TC)n Simple_repeat Simple_repeat 1 46 0 748 212 19 66 chr3 4693897 4694109 -213343049 + MLT1A2 LTR MaLR 173 374 0 21 36 0 0 chr3 4694756 4694784 -213342374 + AT_rich Low_complexity Low_complexity 1 28 0 476 255 24 34 chr3 4694813 4695021 -213342137 - L1MC/D LINE L1 -1989 5819 5614 22 56 0 0 chr3 4697205 4697241 -213339917 + AT_rich Low_complexity Low_complexity 1 36 0 1939 173 0 0 chr3 4697352 4697658 -213339500 - AluJo SINE Alu -5 307 2 1295 303 48 32 chr3 4697676 4698306 -213338852 + MLT2F LTR ERVL 18 657 -6 26 50 0 0 chr3 4698438 4698478 -213338680 + AT_rich Low_complexity Low_complexity 1 40 0 259 265 73 15 chr3 4698493 4698561 -213338597 + MIR SINE MIR 29 100 -108 2814 13 0 0 chr3 4698927 4699237 -213337921 + AluY SINE Alu 1 310 -1 356 333 50 6 chr3 4700094 4700253 -213336905 - MIR SINE MIR -12 250 85 180 0 0 0 chr3 4700293 4700313 -213336845 + (A)n Simple_repeat Simple_repeat 1 20 0 519 159 24 56 chr3 4700373 4700388 -213336770 - MER53 DNA DNA -67 122 108 2303 189 38 6 chr3 4700388 4700884 -213336274 - MER67D LTR ERV1 -2 512 1 519 159 24 56 chr3 4700884 4700994 -213336164 - MER53 DNA DNA -81 108 1 296 350 8 8 chr3 4702100 4702217 -213334941 - L2 LINE L2 -6 3266 3150 7446 121 21 15 chr3 4702946 4704999 -213332159 - L1PA5 LINE L1 0 6154 4092 1309 168 196 0 chr3 4705209 4705355 -213331803 - AluJo SINE Alu -13 299 183 2119 102 16 7 chr3 4705355 4705658 -213331500 - AluY SINE Alu -5 306 1 1309 168 196 0 chr3 4705658 4705761 -213331397 - AluJo SINE Alu -129 183 1 2051 204 51 44 chr3 4705761 4706311 -213330847 + MLT2B3 LTR ERVL 1 554 0 747 215 82 0 chr3 4706321 4706540 -213330618 - L1M4 LINE L1 -2929 3217 2981 992 120 0 0 chr3 4706573 4706706 -213330452 - AluSq/x SINE Alu -179 133 1 889 183 27 47 chr3 4706733 4706884 -213330274 - L1M4 LINE L1 -3170 2976 2831 1138 217 19 86 chr3 4706884 4707198 -213329960 - AluJb SINE Alu -8 294 2 889 183 27 47 chr3 4707198 4707303 -213329855 - L1M4 LINE L1 -3315 2831 2725 439 304 60 0 chr3 4707319 4707487 -213329671 + L1M4 LINE L1 3656 3833 -2313 2294 93 21 0 chr3 4707487 4707778 -213329380 - AluSg1 SINE Alu -12 297 1 1652 85 16 0 chr3 4707778 4708025 -213329133 - PABL_A-int LTR ERV1 -4546 469 219 439 255 10 0 chr3 4708143 4708241 -213328917 - MIR SINE MIR -154 108 10 907 143 0 0 chr3 4710337 4710470 -213326688 + FLAM_C SINE Alu 1 133 -10 2291 88 7 0 chr3 4710476 4710770 -213326388 + AluSp SINE Alu 1 296 -17 2516 40 3 0 chr3 4711200 4711497 -213325661 - AluY SINE Alu -13 298 1 312 27 0 0 chr3 4713531 4713568 -213323590 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 909 202 51 88 chr3 4715025 4715082 -213322076 - L1M4 LINE L1 -1481 4665 4607 2309 96 3 10 chr3 4715082 4715383 -213321775 + AluSp SINE Alu 1 299 -14 909 202 51 88 chr3 4715383 4715735 -213321423 - L1M4 LINE L1 -1539 4607 4271 455 315 80 5 chr3 4718377 4718577 -213318581 + MIR SINE MIR 48 262 0 2440 162 35 56 chr3 4718967 4719846 -213317312 - L1M4 LINE L1 -439 5745 4856 1863 152 7 14 chr3 4719846 4720167 -213316991 - AluJb SINE Alu 0 319 1 247 313 119 0 chr3 4720546 4720613 -213316545 + MIR SINE MIR 15 89 -173 694 171 8 8 chr3 4720615 4720732 -213316426 + FLAM_C SINE Alu 2 118 -25 2262 39 0 4 chr3 4720739 4720998 -213316160 + AluY SINE Alu 40 297 -14 305 231 196 42 chr3 4721044 4721187 -213315971 - L2 LINE L2 -3 3310 3146 204 342 13 0 chr3 4821821 4821900 -213215258 - MIR SINE MIR -59 149 70 3562 119 12 2 chr3 4822236 4822742 -213214416 - L1PB3 LINE L1 0 6154 5644 812 84 0 19 chr3 4822782 4822889 -213214269 - FLAM_A SINE Alu -16 126 22 1887 128 16 26 chr3 4823735 4824041 -213213117 + AluSx SINE Alu 1 303 -9 533 218 247 6 chr3 4824041 4824211 -213212947 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 4824666 4824792 -213212366 + MIR SINE MIR 20 146 -116 222 338 13 0 chr3 4826804 4826881 -213210277 - MIR SINE MIR -63 145 68 186 293 35 0 chr3 4827610 4827668 -213209490 + MIR3 SINE MIR 112 171 -37 376 303 141 15 chr3 4828375 4828573 -213208585 - MIR SINE MIR 0 262 40 203 79 26 0 chr3 4829591 4829629 -213207529 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1002 146 189 5 chr3 4830472 4830657 -213206501 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 4830820 4830843 -213206315 + AT_rich Low_complexity Low_complexity 1 23 0 2289 112 0 0 chr3 4830871 4831174 -213205984 - AluSx SINE Alu -9 303 1 315 365 0 0 chr3 4831330 4831445 -213205713 - MIR3 SINE MIR -23 185 71 298 163 0 0 chr3 4831445 4831494 -213205664 + L1MC3 LINE L1 7045 7093 -692 291 262 24 12 chr3 4831498 4831582 -213205576 + MLT1F1 LTR MaLR 40 124 -443 2180 187 74 71 chr3 4831583 4832178 -213204980 + L1MC3 LINE L1 7189 7785 0 2220 112 0 13 chr3 4832966 4833269 -213203889 - AluSx SINE Alu -13 299 1 2094 121 0 0 chr3 4834270 4834575 -213202583 + AluSx SINE Alu 1 305 0 520 281 67 12 chr3 4834989 4835153 -213202005 - MER5B DNA MER1_type 0 178 6 276 87 0 43 chr3 4835865 4835911 -213201247 + L2 LINE L2 3195 3238 -75 2162 112 3 0 chr3 4836523 4836818 -213200340 + AluSp SINE Alu 1 296 -17 372 363 57 6 chr3 4837006 4837163 -213199995 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 4837271 4837299 -213199859 + AT_rich Low_complexity Low_complexity 1 28 0 1742 190 7 3 chr3 4837347 4837642 -213199516 + AluSx SINE Alu 1 296 -16 2539 123 5 32 chr3 4841153 4841527 -213195631 - THE1B LTR MaLR 0 364 1 8333 128 30 8 chr3 4841856 4843168 -213193990 - Tigger1 DNA MER2_type 0 2418 1079 3672 135 107 6 chr3 4843157 4843793 -213193365 - Tigger1 DNA MER2_type -1656 762 63 * 279 284 0 0 chr3 4845272 4845346 -213191812 + C-rich Low_complexity Low_complexity 1 74 0 1675 112 0 16 chr3 4845873 4846115 -213191043 + AluSg/x SINE Alu 73 310 -2 1148 198 105 0 chr3 4846123 4846381 -213190777 - L1M4 LINE L1 -1073 5073 4789 277 180 16 141 chr3 4846802 4846930 -213190228 + MLT1H LTR MaLR 438 549 0 376 249 115 91 chr3 4847018 4847076 -213190082 - L1ME4a LINE L1 -232 5889 5834 1887 135 7 0 chr3 4847076 4847357 -213189801 + AluSg SINE Alu 13 295 -15 376 249 115 91 chr3 4847357 4847551 -213189607 - L1ME4a LINE L1 -287 5834 5631 2097 109 10 7 chr3 4847798 4848092 -213189066 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 4848197 4848223 -213188935 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 209 173 154 19 chr3 4848310 4848362 -213188796 + L2 LINE L2 3252 3310 -3 2240 100 0 3 chr3 4848382 4848671 -213188487 + AluSx SINE Alu 1 288 -24 276 284 0 68 chr3 4851467 4851555 -213185603 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 4852741 4852767 -213184391 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 385 57 0 chr3 4853963 4854085 -213183073 + MIR SINE MIR 21 149 -113 1029 186 9 24 chr3 4855669 4855810 -213181348 + MER3 DNA MER1_type 2 141 -68 1936 143 7 7 chr3 4855810 4856097 -213181061 + AluSx SINE Alu 1 287 -25 1029 186 9 24 chr3 4856097 4856165 -213180993 + MER3 DNA MER1_type 141 208 -1 299 269 86 30 chr3 4856259 4856493 -213180665 + L1ME4a LINE L1 5873 6119 -2 685 224 39 86 chr3 4856580 4856835 -213180323 + MER112 DNA MER1_type 6 248 -12 1263 124 0 43 chr3 4856966 4857152 -213180006 + AluSx SINE Alu 1 178 -134 424 246 53 18 chr3 4857815 4857929 -213179229 + MIR3 SINE MIR 14 131 -77 1856 145 35 0 chr3 4858953 4859125 -213178033 - AluSx SINE Alu -13 299 112 387 0 0 0 chr3 4859125 4859168 -213177990 + (TTA)n Simple_repeat Simple_repeat 2 44 0 1856 145 35 0 chr3 4859168 4859284 -213177874 - AluSx SINE Alu -200 112 1 257 109 455 0 chr3 4859673 4859728 -213177430 + MADE1 DNA Mariner 1 80 0 2170 100 7 0 chr3 4860179 4860490 -213176668 + AluSx SINE Alu 1 313 0 1900 167 0 0 chr3 4860509 4860797 -213176361 - AluJb SINE Alu -19 293 6 939 117 7 15 chr3 4860797 4860934 -213176224 - AluJb SINE Alu -176 136 1 339 314 58 19 chr3 4861092 4861248 -213175910 - MIR3 SINE MIR -8 200 39 2003 140 10 0 chr3 4861444 4861737 -213175421 + AluSx SINE Alu 1 296 -16 210 333 0 43 chr3 4862312 4862381 -213174777 - L3 LINE CR1 -4 1573 1508 981 195 20 20 chr3 4862440 4862640 -213174518 - MER20 DNA MER1_type -19 200 1 760 222 102 9 chr3 4863080 4863296 -213173862 + MIR SINE MIR 14 249 -13 206 310 113 0 chr3 4863645 4863716 -213173442 + MIR SINE MIR 29 107 -155 2308 97 0 3 chr3 4863851 4864161 -213172997 - AluY SINE Alu -2 309 1 236 250 62 38 chr3 4864265 4864345 -213172813 - MIR SINE MIR -81 127 46 2135 116 3 16 chr3 4865139 4865449 -213171709 + AluSx SINE Alu 4 309 -3 3241 160 30 3 chr3 4865450 4866056 -213171102 + L1MB2 LINE L1 5550 6171 0 544 241 195 0 chr3 4866111 4866285 -213170873 - MIR SINE MIR -6 256 49 557 268 87 70 chr3 4866561 4866860 -213170298 - MER5C DNA MER1_type 0 324 21 259 348 38 52 chr3 4867052 4867262 -213169896 - L2 LINE L2 -544 2770 2564 1616 191 68 28 chr3 4868206 4868403 -213168755 - L1MD2 LINE L1 -1 6358 6170 2260 107 3 0 chr3 4868403 4868713 -213168445 - AluSx SINE Alu -1 311 1 1616 191 68 28 chr3 4868713 4868914 -213168244 - L1MD2 LINE L1 -189 6170 5944 279 245 96 11 chr3 4868914 4869008 -213168150 + MER69 DNA AcHobo 2425 2526 0 2523 53 0 22 chr3 4869290 4869608 -213167550 + AluY SINE Alu 1 311 0 181 317 99 49 chr3 4869790 4869932 -213167226 + MIR SINE MIR 3 151 -111 22 0 0 0 chr3 4869999 4870021 -213167137 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 4870056 4870185 -213166973 - MIR SINE MIR -75 133 2 1873 72 103 4 chr3 4870256 4870518 -213166640 + AluSc SINE Alu 5 292 -17 280 217 0 17 chr3 4870872 4870932 -213166226 + MER91 DNA MER1_type 81 139 -1 209 296 14 28 chr3 4871557 4871628 -213165530 + MIR SINE MIR 20 89 -119 232 235 123 0 chr3 4871817 4871898 -213165260 + MIR3 SINE MIR 102 192 -16 292 211 273 19 chr3 4872657 4872818 -213164340 - L1MC4a LINE L1 -1859 5949 5748 1688 80 0 0 chr3 4872953 4873166 -213163992 + AluSg SINE Alu 1 213 -97 348 236 183 21 chr3 4873208 4873399 -213163759 - L1MC4a LINE L1 -2291 5517 5296 547 300 143 29 chr3 4873435 4873979 -213163179 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 4874250 4874276 -213162882 + AT_rich Low_complexity Low_complexity 1 26 0 360 232 36 94 chr3 4875337 4875445 -213161713 + L2 LINE L2 3182 3282 -31 2557 98 30 6 chr3 4875445 4875811 -213161347 - THE1C LTR MaLR 0 375 1 360 232 36 94 chr3 4875811 4875840 -213161318 + L2 LINE L2 3282 3311 -2 563 280 13 13 chr3 4875844 4875994 -213161164 + MIR SINE MIR 34 183 -79 1688 188 40 3 chr3 4876247 4876572 -213160586 + MER1B DNA MER1_type 1 337 0 245 295 105 11 chr3 4876663 4876758 -213160400 - L3 LINE CR1 -278 1299 1196 275 282 57 0 chr3 4877345 4877469 -213159689 - L1MC/D LINE L1 -1983 5825 5695 235 254 211 7 chr3 4877506 4877648 -213159510 - L1MC/D LINE L1 -1445 4701 4531 1890 151 18 0 chr3 4878544 4878829 -213158329 + AluJb SINE Alu 9 298 -14 256 267 67 33 chr3 4879069 4879159 -213157999 + MIR SINE MIR 13 105 -157 1055 130 0 34 chr3 4882312 4882489 -213154669 + AluSg/x SINE Alu 124 294 -15 428 255 135 20 chr3 4887610 4887810 -213149348 - MIR SINE MIR -9 253 31 258 282 0 113 chr3 4888320 4888444 -213148714 - MIR3 SINE MIR -12 196 87 2430 69 3 0 chr3 4889113 4889417 -213147741 - AluY SINE Alu -6 305 1 265 368 60 8 chr3 4889527 4889644 -213147514 + L2 LINE L2 3191 3313 0 240 274 140 18 chr3 4890711 4890768 -213146390 + L1MC/D LINE L1 5352 5401 -2407 1682 152 72 4 chr3 4890768 4891045 -213146113 - AluSx SINE Alu -16 296 1 240 274 140 18 chr3 4891045 4891151 -213146007 + L1MC/D LINE L1 5401 5535 -2273 462 306 0 0 chr3 4891323 4891434 -213145724 - MER81 DNA DNA 0 114 4 714 254 215 0 chr3 4892153 4892358 -213144800 + MIR SINE MIR 6 254 -8 388 352 49 6 chr3 4892626 4892788 -213144370 + MIR SINE MIR 81 249 -13 427 315 34 0 chr3 4893090 4893236 -213143922 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 4893283 4893339 -213143819 + (TG)n Simple_repeat Simple_repeat 1 56 0 487 227 302 0 chr3 4893383 4893555 -213143603 - MIR SINE MIR -10 252 29 2189 71 39 3 chr3 4893557 4893840 -213143318 - AluY SINE Alu -18 293 1 1877 154 3 13 chr3 4894612 4894923 -213142235 + AluJb SINE Alu 1 308 -4 206 342 57 19 chr3 4894940 4895098 -213142060 - L2 LINE L2 -192 3080 2917 432 288 113 19 chr3 4895440 4895652 -213141506 + HAL1 LINE L1 434 665 -1842 383 306 89 0 chr3 4895839 4896120 -213141038 + HAL1 LINE L1 984 1289 -1218 1643 249 190 30 chr3 4896124 4896951 -213140207 + HAL1 LINE L1 1340 2298 -209 212 292 79 22 chr3 4897471 4897560 -213139598 - MIR3 SINE MIR -25 183 90 2125 141 13 0 chr3 4897691 4897997 -213139161 + AluJo SINE Alu 1 310 -2 1474 206 109 43 chr3 4898350 4898856 -213138302 + MER90 LTR ERV1 70 608 -6 474 204 160 18 chr3 4899463 4899688 -213137470 + MER112 DNA MER1_type 4 260 0 1683 161 17 30 chr3 4901073 4901372 -213135786 - AluJb SINE Alu -17 295 1 7603 15 0 0 chr3 4901944 4903177 -213133981 - L1HS LINE L1 0 6155 4923 688 129 103 189 chr3 4903413 4903547 -213133611 + MER33 DNA MER1_type 1 145 -2440 1752 171 20 3 chr3 4903547 4903840 -213133318 - AluJb SINE Alu -14 298 1 688 129 103 189 chr3 4903840 4904055 -213133103 + MER33 DNA MER1_type 145 320 -4 534 236 48 36 chr3 4904282 4904447 -213132711 - MER5B DNA MER1_type -1 177 11 293 367 17 0 chr3 4904735 4904855 -213132303 + MIR SINE MIR 8 129 -133 860 131 77 0 chr3 4905044 4905174 -213131984 - FRAM SINE Alu -17 159 20 583 99 148 10 chr3 4905223 4905324 -213131834 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 4905329 4905352 -213131806 + AT_rich Low_complexity Low_complexity 1 23 0 4246 91 21 21 chr3 4905823 4906014 -213131144 + PABL_A LTR ERV1 1 191 -469 2343 93 0 7 chr3 4906014 4906324 -213130834 - AluSx SINE Alu -4 308 1 4246 91 21 21 chr3 4906324 4906783 -213130375 + PABL_A LTR ERV1 190 651 -9 1742 97 45 0 chr3 4908391 4908659 -213128499 - AluSq SINE Alu -9 304 25 888 210 189 7 chr3 4909247 4909461 -213127697 + MER2 DNA MER2_type 1 283 -61 2305 92 0 0 chr3 4909461 4909756 -213127402 - AluSx SINE Alu -13 299 5 888 210 189 7 chr3 4909756 4909832 -213127326 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 4909832 4909879 -213127279 + (GA)n Simple_repeat Simple_repeat 1 48 0 2595 258 52 18 chr3 4909907 4910937 -213126221 + L1ME1 LINE L1 3292 4356 -1790 1546 193 14 14 chr3 4911039 4911324 -213125834 + AluJb SINE Alu 1 285 -27 22 0 0 0 chr3 4911324 4911346 -213125812 + AT_rich Low_complexity Low_complexity 1 22 0 2477 233 26 51 chr3 4911346 4911386 -213125772 + L1ME1 LINE L1 5403 5443 -723 2053 131 7 0 chr3 4911386 4911677 -213125481 - AluSg SINE Alu -17 293 1 2477 233 26 51 chr3 4911677 4912180 -213124978 + L1ME1 LINE L1 5443 5957 -209 2189 113 0 0 chr3 4912180 4912473 -213124685 + AluSg SINE Alu 1 293 -17 2477 233 26 51 chr3 4912473 4912656 -213124502 + L1ME1 LINE L1 5957 6111 -55 1774 146 153 42 chr3 4912656 4912729 -213124429 - MSTA LTR MaLR 0 428 365 2413 52 0 29 chr3 4912729 4913035 -213124123 + AluY SINE Alu 1 297 -14 1774 146 153 42 chr3 4913035 4913346 -213123812 - MSTA LTR MaLR -63 365 1 2477 233 26 51 chr3 4913346 4913395 -213123763 + L1ME1 LINE L1 6111 6160 -6 1754 139 58 41 chr3 4913861 4914156 -213123002 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4914495 4914521 -213122637 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 561 278 131 0 chr3 4914596 4914772 -213122386 - MIR SINE MIR -32 230 32 609 178 8 0 chr3 4915112 4915230 -213121928 - MLT1D LTR MaLR 0 505 387 2271 104 0 0 chr3 4915439 4915737 -213121421 - AluSx SINE Alu -3 309 12 1527 195 3 36 chr3 4915960 4916268 -213120890 + AluJo SINE Alu 1 298 -14 870 168 0 0 chr3 4916312 4916437 -213120721 + AluJb SINE Alu 1 125 -187 1835 158 18 0 chr3 4917298 4917582 -213119576 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 4917592 4917673 -213119485 + (TA)n Simple_repeat Simple_repeat 1 84 0 216 144 22 0 chr3 4917945 4917991 -213119167 + MIR SINE MIR 99 146 -62 2005 114 0 24 chr3 4918106 4918415 -213118743 + AluSx SINE Alu 3 304 0 4457 183 19 25 chr3 4918702 4919582 -213117576 - L1MB8 LINE L1 0 6178 5304 833 199 6 0 chr3 4919585 4919741 -213117417 - FRAM SINE Alu 0 40 1 641 133 23 8 chr3 4919743 4919871 -213117287 - L1MB8 LINE L1 -830 5316 5187 610 264 7 14 chr3 4919871 4920040 -213117118 - AluY SINE Alu 0 301 134 1788 192 69 38 chr3 4920743 4921151 -213116007 + L1ME1 LINE L1 4902 5341 -825 2198 124 7 0 chr3 4921151 4921458 -213115700 + AluSx SINE Alu 1 309 -3 1788 192 69 38 chr3 4921458 4921635 -213115523 + L1ME1 LINE L1 5341 5511 -655 512 169 24 0 chr3 4921639 4921722 -213115436 + MLT1D LTR MaLR 4 88 -417 1115 154 58 92 chr3 4921765 4922099 -213115059 - AluJb SINE Alu 0 324 1 1308 239 84 16 chr3 4922111 4922479 -213114679 + MLT1D LTR MaLR 113 505 0 603 228 8 0 chr3 4922489 4922616 -213114542 + L1ME1 LINE L1 5518 5645 -521 1939 172 42 15 chr3 4922660 4923062 -213114096 + L1ME1 LINE L1 5747 6159 -7 477 40 40 0 chr3 4923070 4923146 -213114012 + (TAGA)n Simple_repeat Simple_repeat 3 81 0 1893 147 0 13 chr3 4923304 4923604 -213113554 + AluSx SINE Alu 1 296 -16 187 235 0 0 chr3 4923604 4923638 -213113520 - MIR3 SINE MIR -24 184 151 2164 115 81 32 chr3 4923698 4924045 -213113113 + THE1B LTR MaLR 1 364 0 5243 67 1 3 chr3 4924045 4924703 -213112455 + THE1B-int LTR MaLR 1 657 -923 1448 155 4 52 chr3 4924703 4924955 -213112203 + THE1B LTR MaLR 125 364 0 285 264 110 110 chr3 4924956 4925183 -213111975 - MIR SINE MIR -32 230 4 456 240 108 16 chr3 4925342 4925471 -213111687 - MIR3 SINE MIR -48 160 20 1299 201 0 76 chr3 4925672 4925880 -213111278 + AluJo SINE Alu 1 180 -132 2055 182 12 6 chr3 4925880 4926221 -213110937 + MER61A LTR ERV1 1 343 0 1299 201 0 76 chr3 4926221 4926315 -213110843 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 4926315 4926345 -213110813 + AT_rich Low_complexity Low_complexity 1 30 0 382 296 23 109 chr3 4927057 4927314 -213109844 - MIR SINE MIR -9 253 19 244 291 0 25 chr3 4927485 4927564 -213109594 - MIR3 SINE MIR 0 208 132 250 229 148 0 chr3 4927567 4927628 -213109530 - L2 LINE L2 -2 3270 3201 375 269 53 33 chr3 4928475 4928639 -213108519 - LTR43 LTR ERV1 -207 472 154 412 272 72 56 chr3 4928840 4929035 -213108123 + MLT1K LTR MaLR 224 421 -167 871 316 78 22 chr3 4929245 4929844 -213107314 + L1ME4a LINE L1 5348 5980 -141 1585 259 14 11 chr3 4929954 4930313 -213106845 + MLT1A2 LTR MaLR 1 360 -14 333 183 42 0 chr3 4930739 4930810 -213106348 + MER116 DNA Mariner 1 74 -6 2075 128 6 10 chr3 4932547 4932891 -213104267 - AluSx SINE Alu 0 343 1 234 222 139 28 chr3 4933492 4933600 -213103558 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 4934282 4934727 -213102431 - MLT1D LTR MaLR 0 505 46 1649 183 62 45 chr3 4934729 4934910 -213102248 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 4934910 4935552 -213101606 + LTR9 LTR ERV1 1 612 0 1649 183 62 45 chr3 4935552 4935662 -213101496 - MLT2D LTR ERVL -179 235 128 2393 60 0 13 chr3 4935662 4935961 -213101197 + AluY SINE Alu 1 295 -16 1649 183 62 45 chr3 4935961 4936072 -213101086 - MLT2D LTR ERVL -286 128 1 237 143 24 24 chr3 4936080 4936122 -213101036 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 4936139 4936329 -213100829 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 4936582 4936664 -213100494 - L2 LINE L2 -2 3270 3192 214 308 55 62 chr3 4937205 4937278 -213099880 - MIR SINE MIR -46 216 144 2289 83 48 0 chr3 4937278 4937567 -213099591 - AluSc SINE Alu -6 303 1 214 308 55 62 chr3 4937567 4937639 -213099519 - MIR SINE MIR -118 144 72 4187 118 24 5 chr3 4938262 4938853 -213098305 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 4938924 4939096 -213098062 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 4939186 4939484 -213097674 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 4939484 4940009 -213097149 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 4940009 4940223 -213096935 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 4940491 4940620 -213096538 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 4942027 4942427 -213094731 - LTR47A LTR ERVL 0 452 1 4812 139 44 65 chr3 4942439 4943920 -213093238 - MER83B-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 4943921 4943976 -213093182 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 4943980 4944009 -213093149 + (TG)n Simple_repeat Simple_repeat 2 30 0 1819 116 41 7 chr3 4944029 4944323 -213092835 - MLT2A1 LTR ERVL -140 304 1 4759 221 82 41 chr3 4944323 4945322 -213091836 - MER83B-int LTR ERV1 -2026 2165 1209 216 0 0 0 chr3 4945322 4945346 -213091812 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 891 129 0 30 chr3 4945348 4945480 -213091678 - FLAM_C SINE Alu -5 128 1 4759 221 82 41 chr3 4945480 4945701 -213091457 - MER83B-int LTR ERV1 -2982 1209 891 1570 181 4 0 chr3 4945704 4945985 -213091173 - MER41B LTR ERV1 -353 282 1 699 171 43 41 chr3 4946002 4946196 -213090962 - MER83B-int LTR ERV1 -2590 2290 2009 307 293 75 34 chr3 4946338 4946485 -213090673 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 4946499 4946517 -213090641 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 4946517 4946889 -213090269 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 4946889 4947255 -213089903 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 4947271 4947477 -213089681 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 4947993 4948021 -213089137 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 4948021 4948324 -213088834 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 4948346 4948430 -213088728 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 4948661 4948747 -213088411 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 4948747 4949435 -213087723 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 4949435 4949841 -213087317 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 4949962 4950202 -213086956 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 4950620 4950661 -213086497 + AT_rich Low_complexity Low_complexity 1 41 0 1291 243 14 3 chr3 4950661 4950945 -213086213 + AluJb SINE Alu 1 287 -15 243 0 0 0 chr3 4950994 4951021 -213086137 + (CA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 4952342 4952363 -213084795 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 4952847 4953287 -213083871 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 4953380 4953444 -213083714 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 4953447 4953487 -213083671 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 4953487 4953587 -213083571 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 4953501 4953598 -213083560 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 4953637 4954101 -213083057 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 4955464 4955665 -213081493 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 4956983 4957424 -213079734 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 4957433 4957838 -213079320 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 4957838 4958049 -213079109 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 4958388 4958518 -213078640 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 4958689 4958747 -213078411 + MIR3 SINE MIR 8 62 -146 4922 172 27 34 chr3 4958857 4960243 -213076915 + L1MB3 LINE L1 4810 6181 -2 2351 132 33 33 chr3 4961767 4961836 -213075322 - THE1B LTR MaLR 0 364 296 1994 125 3 14 chr3 4961836 4962133 -213075025 + AluSx SINE Alu 1 294 -18 2351 132 33 33 chr3 4962133 4962427 -213074731 - THE1B LTR MaLR -67 297 1 254 336 70 31 chr3 4963199 4963327 -213073831 + L2 LINE L2 3132 3264 -8 1928 147 3 13 chr3 4963562 4963875 -213073283 - AluJb SINE Alu -2 310 1 1721 170 10 10 chr3 4964809 4965109 -213072049 + AluJo SINE Alu 1 300 -12 1274 177 42 103 chr3 4965124 4965435 -213071723 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 4965507 4965587 -213071571 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 4965679 4966044 -213071114 + THE1B LTR MaLR 1 364 0 624 317 176 32 chr3 4966047 4966388 -213070770 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 4967494 4967632 -213069526 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 4967688 4967840 -213069318 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 4968143 4968234 -213068924 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 4968234 4968555 -213068603 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 4968555 4968697 -213068461 - Charlie8 DNA MER1_type -218 123 2 5415 129 16 5 chr3 4968967 4969783 -213067375 - L1MC1 LINE L1 0 6333 5509 442 306 25 13 chr3 4970837 4970994 -213066164 + MIR SINE MIR 104 262 0 337 258 13 0 chr3 4971175 4971262 -213065896 + MIR SINE MIR 40 126 -92 311 301 68 20 chr3 4971263 4971409 -213065749 + MIR SINE MIR 49 201 -61 993 215 45 0 chr3 4971655 4971855 -213065303 + MER3 DNA MER1_type 1 209 0 2255 99 3 10 chr3 4972376 4972690 -213064468 + AluSx SINE Alu 1 312 0 580 294 99 14 chr3 4972865 4973086 -213064072 + MIR SINE MIR 18 257 -5 261 119 48 0 chr3 4973915 4973957 -213063201 + MLT1D LTR MaLR 308 351 -154 * 1154 164 116 58 chr3 4973933 4974244 -213062914 - MLT1D LTR MaLR -165 340 12 817 258 33 16 chr3 4974329 4974511 -213062647 + MER5A DNA MER1_type 1 185 -4 3242 138 14 68 chr3 4974812 4975168 -213061990 - LTR26B LTR ERV1 0 531 214 1604 174 19 47 chr3 4975168 4975485 -213061673 - AluJb SINE Alu -4 308 1 3242 138 14 68 chr3 4975485 4975686 -213061472 - LTR26B LTR ERV1 -317 214 4 395 259 114 32 chr3 4975852 4976010 -213061148 - MIR3 SINE MIR 0 208 38 959 138 0 7 chr3 4976405 4976550 -213060608 - AluSg/x SINE Alu -30 279 136 438 333 0 0 chr3 4977669 4977780 -213059378 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 4977788 4977811 -213059347 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 4977870 4978257 -213058901 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 4979154 4979304 -213057854 - MER5A DNA MER1_type -10 179 1 216 210 65 32 chr3 4979324 4979386 -213057772 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 4979414 4979449 -213057709 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 360 364 23 6 chr3 4979824 4980000 -213057158 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 4980092 4980639 -213056519 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 4980819 4980893 -213056265 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 4981138 4981244 -213055914 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 4981620 4981773 -213055385 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 4982680 4982735 -213054423 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 4982737 4982870 -213054288 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 4982926 4983003 -213054155 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 4983372 4983439 -213053719 - L2 LINE L2 -7 3265 3198 2205 129 3 0 chr3 4983606 4983916 -213053242 + AluSq SINE Alu 1 311 -2 1215 260 59 52 chr3 4984006 4984467 -213052691 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 4984489 4984553 -213052605 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 4984553 4984947 -213052211 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 4985024 4985502 -213051656 - LTR50 LTR ERVL 0 795 124 1100 181 121 92 chr3 4985644 4986161 -213050997 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 4986179 4986366 -213050792 - MIR SINE MIR -21 241 47 1234 191 17 39 chr3 4987275 4987506 -213049652 - AluJo SINE Alu -86 226 1 887 211 80 0 chr3 4987506 4987681 -213049477 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 4989261 4989290 -213047868 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 4989768 4989883 -213047275 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 4990235 4990301 -213046857 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 4990551 4990614 -213046544 + (TG)n Simple_repeat Simple_repeat 2 64 0 366 267 0 11 chr3 4990614 4990704 -213046454 - LTR67 LTR ERVL -9 548 460 345 235 43 17 chr3 4990713 4990828 -213046330 - L1ME LINE L1 -374 5747 5630 294 290 30 53 chr3 4991360 4991491 -213045667 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 4992219 4992278 -213044880 + (TA)n Simple_repeat Simple_repeat 2 60 0 742 249 73 96 chr3 4992323 4992725 -213044433 + MLT1I LTR MaLR 1 402 -7 209 296 59 89 chr3 4992734 4992869 -213044289 - MIR SINE MIR -61 147 17 468 0 0 0 chr3 4994050 4994102 -213043056 + (CA)n Simple_repeat Simple_repeat 2 53 0 449 301 65 37 chr3 4994116 4994362 -213042796 - Charlie8 DNA MER1_type -2160 257 5 337 195 26 26 chr3 4994887 4994964 -213042194 - MLT1L LTR MaLR -536 79 3 194 298 0 0 chr3 4994979 4995036 -213042122 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 4995113 4995141 -213042017 + AT_rich Low_complexity Low_complexity 1 28 0 1106 267 70 26 chr3 4995174 4995739 -213041419 - L2 LINE L2 -159 3154 2570 1789 164 7 20 chr3 4995768 4996066 -213041092 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 4996066 4996088 -213041070 + AT_rich Low_complexity Low_complexity 1 22 0 184 310 127 35 chr3 5097079 5097221 -212939937 + L2 LINE L2 3150 3304 -9 740 259 37 27 chr3 5097261 5097555 -212939603 - L1M4 LINE L1 -981 5165 4869 1243 194 3 54 chr3 5097665 5097980 -212939178 - AluY SINE Alu 0 311 13 4874 161 17 25 chr3 5098384 5099346 -212937812 + L1P3 LINE L1 10 1069 -5392 6117 94 6 0 chr3 5099346 5100204 -212936954 + L1PA7 LINE L1 5277 6139 -15 193 176 33 33 chr3 5100204 5100295 -212936863 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 432 128 41 23 chr3 5100307 5100479 -212936679 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 714 122 47 6 chr3 5100498 5100670 -212936488 + (TA)n Simple_repeat Simple_repeat 2 180 0 26 0 0 0 chr3 5100670 5100696 -212936462 + AT_rich Low_complexity Low_complexity 1 26 0 556 142 7 7 chr3 5100698 5100839 -212936319 + (TA)n Simple_repeat Simple_repeat 2 142 0 318 336 0 25 chr3 5100853 5100972 -212936186 - L1MC4 LINE L1 -1339 6703 6588 438 130 28 0 chr3 5100972 5101080 -212936078 + (TA)n Simple_repeat Simple_repeat 1 111 0 10561 125 13 2 chr3 5101180 5102862 -212934296 + L1P3 LINE L1 1269 2968 -3178 7461 86 11 1 chr3 5102840 5104308 -212932850 + L1P3 LINE L1 4287 5764 -390 * 1721 136 0 0 chr3 5104408 5104651 -212932507 + AluSq SINE Alu 55 297 -16 389 307 67 11 chr3 5105405 5105584 -212931574 - MIR SINE MIR -11 251 63 316 286 133 41 chr3 5106075 5106169 -212930989 + MIR SINE MIR 34 118 -144 1550 222 25 73 chr3 5106169 5106700 -212930458 + MLT1D LTR MaLR 1 505 0 316 286 133 41 chr3 5106700 5106801 -212930357 + MIR SINE MIR 118 247 -15 24 53 0 0 chr3 5106826 5106864 -212930294 + AT_rich Low_complexity Low_complexity 1 38 0 2067 149 0 0 chr3 5108947 5109249 -212927909 - AluSq SINE Alu -11 302 1 23 54 0 0 chr3 5109389 5109426 -212927732 + AT_rich Low_complexity Low_complexity 1 37 0 2816 203 50 14 chr3 5109726 5109864 -212927294 - L1MB7 LINE L1 -7 6177 6045 183 42 0 0 chr3 5109864 5109888 -212927270 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 2816 203 50 14 chr3 5109888 5110415 -212926743 - L1MB7 LINE L1 -139 6045 5488 4875 212 44 20 chr3 5110419 5111899 -212925259 - L1MB7 LINE L1 -724 5450 3946 308 172 0 16 chr3 5111907 5111971 -212925187 + L1MD2 LINE L1 6275 6337 -22 26 0 0 0 chr3 5111978 5112004 -212925154 + AT_rich Low_complexity Low_complexity 1 26 0 400 269 90 19 chr3 5113207 5113363 -212923795 - MIR SINE MIR -76 186 20 22 0 0 30 chr3 5113466 5113482 -212923676 + AT_rich Low_complexity Low_complexity 1 16 -16 2267 58 3 48 chr3 5113482 5113795 -212923363 + AluY SINE Alu 13 311 0 22 0 0 30 chr3 5113795 5113811 -212923347 + AT_rich Low_complexity Low_complexity 16 32 0 4077 210 76 49 chr3 5115234 5116994 -212920164 - MER52A LTR ERV1 -12 1743 1 562 302 62 18 chr3 5117425 5117766 -212919392 - HAL1 LINE L1 -1489 1018 663 26 30 0 0 chr3 5118044 5118077 -212919081 + AT_rich Low_complexity Low_complexity 1 33 0 1701 174 0 0 chr3 5118232 5118533 -212918625 + AluJb SINE Alu 1 301 0 299 189 0 0 chr3 5120145 5120198 -212916960 - HsTC2 DNA Tc2 -5 1893 1841 824 199 70 25 chr3 5120202 5120403 -212916755 + LTR50 LTR ERVL 1 210 -585 1052 287 36 27 chr3 5120423 5120901 -212916257 - L1M4 LINE L1 -898 5248 4767 294 245 47 9 chr3 5120929 5121035 -212916123 + CT-rich Low_complexity Low_complexity 6 115 0 721 279 47 45 chr3 5121036 5121070 -212916088 - L1M4 LINE L1 -1445 4701 4669 1233 175 55 7 chr3 5121070 5121379 -212915779 + MER33 DNA MER1_type 1 324 0 721 279 47 45 chr3 5121379 5121924 -212915234 - L1M4 LINE L1 -1477 4669 4121 1473 285 22 15 chr3 5121929 5122463 -212914695 - L1M4 LINE L1 -2074 4072 3535 579 217 1 35 chr3 5122463 5122690 -212914468 + L1M2 LINE L1 2735 2952 -3896 915 194 23 23 chr3 5122927 5123102 -212914056 - AluJo SINE Alu -137 175 1 369 268 41 24 chr3 5123115 5123238 -212913920 - MIR SINE MIR -56 206 82 366 297 82 15 chr3 5123238 5123433 -212913725 + L1MC/D LINE L1 5022 5229 -917 528 304 94 24 chr3 5123515 5123896 -212913262 + L1MC/D LINE L1 5317 5724 -2084 14901 99 14 6 chr3 5123981 5126175 -212910983 - L1P LINE L1 -1437 4709 2500 11554 29 3 0 chr3 5126177 5128353 -212908805 - L1PA2 LINE L1 0 6155 4001 16457 37 1 1 chr3 5128353 5130389 -212906769 + L1PA2 LINE L1 1978 4012 -2134 887 83 0 8 chr3 5130383 5130516 -212906642 - L1P LINE L1 -3635 2511 2380 * 1901 181 52 11 chr3 5130498 5130962 -212906196 - L1P LINE L1 -4418 1728 1246 23 54 0 0 chr3 5131796 5131833 -212905325 + AT_rich Low_complexity Low_complexity 1 37 0 1137 163 0 100 chr3 5132238 5132489 -212904669 + MER21B LTR ERV1 1 226 -637 1405 188 65 53 chr3 5132497 5132525 -212904633 + MER21B LTR ERV1 503 529 -334 2520 205 43 76 chr3 5132525 5133245 -212903913 - MER72 LTR ERV1 0 722 26 2531 59 0 3 chr3 5133245 5133550 -212903608 - AluY SINE Alu -7 304 1 2520 205 43 76 chr3 5133550 5133576 -212903582 - MER72 LTR ERV1 -696 26 1 1405 188 65 53 chr3 5133576 5133903 -212903255 + MER21B LTR ERV1 529 862 -1 2150 106 3 3 chr3 5134133 5134417 -212902741 - AluSq SINE Alu -27 286 3 386 234 79 106 chr3 5134489 5134792 -212902366 - L1ME4a LINE L1 -63 6058 5764 604 216 35 0 chr3 5134858 5134974 -212902184 + MER101B LTR ERV1 1 120 -450 275 59 0 0 chr3 5135008 5135042 -212902116 + MER21B LTR ERV1 672 705 -158 1994 134 0 26 chr3 5135763 5136069 -212901089 + AluSq SINE Alu 1 298 -15 3491 130 14 40 chr3 5136165 5136790 -212900368 - MER4B LTR ERV1 0 610 2 23 33 0 0 chr3 5136829 5136859 -212900299 + AT_rich Low_complexity Low_complexity 1 30 0 2446 65 3 7 chr3 5136999 5137308 -212899850 - AluY SINE Alu -3 308 1 1478 290 92 56 chr3 5137358 5138342 -212898816 + LTR28 LTR ERV1 1 1020 0 259 310 0 109 chr3 5138806 5138980 -212898178 - MIR SINE MIR -71 191 37 366 271 9 0 chr3 5139280 5139387 -212897771 + MER34 LTR ERV1 1 108 -434 396 108 95 14 chr3 5139403 5139477 -212897681 + LTR29 LTR ERV1 151 230 -392 1171 141 20 0 chr3 5139482 5139681 -212897477 + LTR29 LTR ERV1 190 392 -230 1211 145 86 23 chr3 5139681 5139902 -212897256 + AluJo SINE Alu 64 298 -14 974 225 36 0 chr3 5139919 5140141 -212897017 + LTR49 LTR ERV1 366 595 0 470 181 0 43 chr3 5140293 5140481 -212896677 + (TA)n Simple_repeat Simple_repeat 1 180 0 8568 208 28 19 chr3 5140612 5140630 -212896528 + L1 LINE L1 2269 2285 -3861 4212 120 5 13 chr3 5140630 5141247 -212895911 - LTR9 LTR ERV1 0 612 1 8568 208 28 19 chr3 5141247 5143323 -212893835 + L1 LINE L1 2285 4383 -1763 247 286 71 11 chr3 5143331 5143614 -212893544 - L1M4 LINE L1 -2741 3405 3106 * 577 321 33 23 chr3 5143607 5144000 -212893158 - L1MCc LINE L1 -4887 1536 1140 216 326 119 26 chr3 5145162 5145355 -212891803 - MIR SINE MIR 0 262 52 1685 137 5 2 chr3 5145363 5145630 -212891528 + L1PA15 LINE L1 5654 5929 -237 1605 118 4 4 chr3 5145680 5145917 -212891241 + L1PA15 LINE L1 5926 6162 -3 42247 53 4 1 chr3 5146384 5152501 -212884657 - L1PA4 LINE L1 0 6155 19 1970 154 81 8 chr3 5152925 5153294 -212883864 + MSTD LTR MaLR 1 396 0 1503 176 36 39 chr3 5153862 5154169 -212882989 - AluJo SINE Alu 0 312 7 22 56 0 0 chr3 5154318 5154354 -212882804 + AT_rich Low_complexity Low_complexity 1 36 0 1107 30 0 0 chr3 5154420 5154554 -212882604 + L1PA4 LINE L1 6018 6151 -4 539 151 41 41 chr3 5154605 5154751 -212882407 - Charlie5 DNA MER1_type -11 2601 2456 180 0 0 0 chr3 5156488 5156508 -212880650 + (TG)n Simple_repeat Simple_repeat 2 21 0 3727 245 51 58 chr3 5156814 5157542 -212879616 + L1ME1 LINE L1 3658 4390 -1776 1245 186 113 15 chr3 5157542 5157839 -212879319 - AluJb SINE Alu 0 312 1 3727 245 51 58 chr3 5157839 5159402 -212877756 + L1ME1 LINE L1 4390 5920 -246 23150 32 7 0 chr3 5159699 5162910 -212874248 + L1P1 LINE L1 2544 5772 -383 207 0 0 0 chr3 5163472 5163495 -212873663 + (CA)n Simple_repeat Simple_repeat 1 23 0 220 304 0 18 chr3 5163540 5163596 -212873562 + L2 LINE L2 3121 3175 -97 562 286 65 35 chr3 5164040 5164239 -212872919 + MIR SINE MIR 58 262 0 332 349 48 26 chr3 5165619 5165848 -212871310 - L2 LINE L2 -3 3310 3077 387 60 0 0 chr3 5166272 5166322 -212870836 + (TTCCC)n Simple_repeat Simple_repeat 1 50 0 27 0 0 0 chr3 5166442 5166469 -212870689 + AT_rich Low_complexity Low_complexity 1 27 0 947 286 34 67 chr3 5166483 5166664 -212870494 + HAL1b LINE L1 364 549 -799 1928 128 6 39 chr3 5166664 5166976 -212870182 + AluSx SINE Alu 1 302 -10 947 286 34 67 chr3 5166976 5167347 -212869811 + HAL1b LINE L1 549 898 -450 276 204 41 10 chr3 5167724 5167822 -212869336 + (TA)n Simple_repeat Simple_repeat 1 101 0 881 228 0 0 chr3 5167857 5168015 -212869143 + AluJb SINE Alu 137 294 -18 1271 165 36 14 chr3 5168030 5168363 -212868795 + MER88 LTR ERVL 43 464 0 515 344 29 16 chr3 5168461 5168705 -212868453 + MIR SINE MIR 6 252 -10 2204 100 7 0 chr3 5169281 5169581 -212867577 - AluY SINE Alu -9 302 1 280 313 12 18 chr3 5169680 5169846 -212867312 + (CATATA)n Simple_repeat Simple_repeat 3 167 0 525 296 109 41 chr3 5170045 5171340 -212865818 - L1M4 LINE L1 -1091 5055 3662 312 316 22 7 chr3 5171701 5171840 -212865318 - L1M4 LINE L1 -2838 3308 3168 2413 118 22 3 chr3 5172536 5172893 -212864265 - THE1B LTR MaLR 0 364 1 2740 156 2 26 chr3 5174400 5174868 -212862290 - MER41B LTR ERV1 0 635 179 1380 127 9 27 chr3 5174903 5174992 -212862166 - AluSq SINE Alu -96 217 128 189 0 0 0 chr3 5174992 5175013 -212862145 + (TA)n Simple_repeat Simple_repeat 1 21 0 1380 127 9 27 chr3 5175013 5175144 -212862014 - AluSq SINE Alu -185 128 1 1272 132 5 0 chr3 5175144 5175334 -212861824 - MER41B LTR ERV1 -444 191 1 363 274 212 0 chr3 5175915 5176061 -212861097 + MER5B DNA MER1_type 2 178 0 535 314 110 4 chr3 5176961 5177197 -212859961 - MIR SINE MIR 0 262 2 265 321 161 12 chr3 5177628 5177790 -212859368 - L2 LINE L2 -195 3077 2892 463 237 23 45 chr3 5177840 5178017 -212859141 + Charlie7 DNA MER1_type 2440 2612 0 204 273 131 10 chr3 5178903 5179002 -212858156 - MIR SINE MIR -5 257 147 2943 160 29 60 chr3 5179006 5179638 -212857520 - LTR9 LTR ERV1 0 612 1 231 320 29 10 chr3 5179684 5179787 -212857371 - MIR SINE MIR -155 107 3 287 265 24 0 chr3 5179844 5179927 -212857231 + (TTCA)n Simple_repeat Simple_repeat 1 85 0 26 0 0 0 chr3 5180522 5180548 -212856610 + AT_rich Low_complexity Low_complexity 1 26 0 272 403 93 5 chr3 5180982 5181198 -212855960 + L2 LINE L2 2551 2785 -529 395 333 62 25 chr3 5181245 5181488 -212855670 + L2 LINE L2 2888 3139 -174 918 277 93 34 chr3 5181546 5181867 -212855291 - LTR16C LTR ERVL -3 488 149 210 280 194 32 chr3 5181955 5182048 -212855110 + L2 LINE L2 3141 3248 -24 1715 179 122 24 chr3 5182247 5182672 -212854486 - MLT1C LTR MaLR 0 467 1 353 243 99 40 chr3 5184655 5184807 -212852351 - LTR37B LTR ERV1 -72 396 236 241 382 38 0 chr3 5186313 5186444 -212850714 - L3b LINE CR1 -121 1462 1327 280 98 49 0 chr3 5186881 5186942 -212850216 + GA-rich Low_complexity Low_complexity 1 64 0 2308 58 0 3 chr3 5187293 5187601 -212849557 - AluY SINE Alu -4 307 1 187 349 0 24 chr3 5188166 5188249 -212848909 + L2 LINE L2 813 893 -2421 348 165 0 28 chr3 5188311 5188420 -212848738 + (TAA)n Simple_repeat Simple_repeat 1 106 0 342 0 0 0 chr3 5188682 5188720 -212848438 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 396 0 0 0 chr3 5188719 5188763 -212848395 + (CA)n Simple_repeat Simple_repeat 2 45 0 202 93 23 23 chr3 5190064 5190107 -212847051 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr3 5190300 5190322 -212846836 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 5191802 5191830 -212845328 + AT_rich Low_complexity Low_complexity 1 28 0 235 280 85 17 chr3 5192078 5192196 -212844962 - MER117 DNA MER1_type -65 132 7 727 179 0 0 chr3 5193140 5193257 -212843901 + FLAM_C SINE Alu 1 117 -16 263 28 28 0 chr3 5193262 5193298 -212843860 + (TAAA)n Simple_repeat Simple_repeat 1 37 0 806 71 8 0 chr3 5193518 5193645 -212843513 + (TTCC)n Simple_repeat Simple_repeat 1 128 0 25 31 0 0 chr3 5193675 5193707 -212843451 + AT_rich Low_complexity Low_complexity 1 32 0 338 261 112 25 chr3 5193924 5194085 -212843073 + L2 LINE L2 1909 2083 -1231 435 299 8 0 chr3 5194100 5194227 -212842931 + L2 LINE L2 2231 2358 -956 237 392 64 8 chr3 5194224 5194349 -212842809 - L2 LINE L2 -366 2948 2817 * 1097 294 88 44 chr3 5194373 5194999 -212842159 + L2 LINE L2 2369 3042 -271 289 286 162 0 chr3 5196182 5196287 -212840871 - MIR3 SINE MIR -2 206 85 326 311 57 31 chr3 5198187 5198380 -212838778 + L3 LINE CR1 1214 1411 -166 235 246 66 0 chr3 5198841 5198902 -212838256 - MIR SINE MIR -149 113 49 180 0 0 0 chr3 5199739 5199759 -212837399 + (A)n Simple_repeat Simple_repeat 1 20 0 28 71 0 0 chr3 5199784 5199840 -212837318 + AT_rich Low_complexity Low_complexity 1 56 0 231 247 33 73 chr3 5200348 5200498 -212836660 + MIR SINE MIR 117 260 -2 198 128 0 0 chr3 5202056 5202095 -212835063 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1565 192 4 4 chr3 5203980 5204107 -212833051 + AluSx SINE Alu 1 127 -185 279 0 0 0 chr3 5204107 5204138 -212833020 + (CA)n Simple_repeat Simple_repeat 2 32 0 1565 192 4 4 chr3 5204138 5204286 -212832872 + AluSx SINE Alu 126 276 -36 333 0 0 0 chr3 5204288 5204325 -212832833 + (TC)n Simple_repeat Simple_repeat 2 38 0 * 587 94 10 0 chr3 5204324 5204420 -212832738 + (TA)n Simple_repeat Simple_repeat 1 97 0 482 358 6 6 chr3 5204493 5204672 -212832486 + L2 LINE L2 1405 1583 -1731 1735 290 128 43 chr3 5204787 5205810 -212831348 + L2 LINE L2 1867 2976 -338 2245 194 21 8 chr3 5205851 5206330 -212830828 - L1MC3 LINE L1 -1 7784 7300 393 293 98 6 chr3 5206336 5206510 -212830648 + L1M4c LINE L1 1704 1893 -4491 337 301 83 74 chr3 5206654 5206669 -212830489 + L1M4c LINE L1 2019 2032 -4531 1662 140 34 17 chr3 5206669 5206962 -212830196 + L1PA16 LINE L1 5866 6163 -3 337 301 83 74 chr3 5206962 5207258 -212829900 + L1M4c LINE L1 2032 2333 -4230 234 195 39 13 chr3 5207270 5207347 -212829811 + L1M4c LINE L1 2303 2381 -4001 3903 209 56 15 chr3 5207354 5208397 -212828761 - L1MC3 LINE L1 -746 5400 5161 * 4354 257 54 17 chr3 5208383 5210002 -212827156 + L1M4c LINE L1 2819 4497 -1885 805 228 56 39 chr3 5209996 5210407 -212826751 + L1M4c LINE L1 4900 5347 -1035 * 948 258 11 22 chr3 5210411 5210678 -212826480 - L1MCb LINE L1 -5781 264 1 4686 181 48 73 chr3 5210844 5212001 -212825157 + MER52A LTR ERV1 627 1755 0 5759 122 4 3 chr3 5213492 5214691 -212822467 + L1PA13 LINE L1 4967 6163 0 29 98 0 0 chr3 5216812 5216904 -212820254 + AT_rich Low_complexity Low_complexity 1 92 0 415 252 163 0 chr3 5217610 5217733 -212819425 + L2 LINE L2 3171 3313 0 24 0 0 0 chr3 5217857 5217881 -212819277 + AT_rich Low_complexity Low_complexity 1 24 0 201 363 70 19 chr3 5218316 5218473 -212818685 + MIR SINE MIR 39 203 -59 2873 227 45 18 chr3 5218682 5219651 -212817507 - L1M4 LINE L1 -2399 4245 3250 * 4271 238 59 41 chr3 5219638 5220256 -212816902 - L1M4 LINE L1 -3698 2946 2340 3371 162 24 7 chr3 5220256 5220848 -212816310 + LTR43 LTR ERV1 1 602 0 4271 238 59 41 chr3 5220848 5222758 -212814400 - L1M4 LINE L1 -4304 2340 307 2055 187 68 60 chr3 5222790 5224091 -212813067 - L1PA6 LINE L1 0 7592 6236 6208 83 108 19 chr3 5224096 5225160 -212811998 - MER11A LTR ERVK 0 1266 1 812 215 5 46 chr3 5225160 5225379 -212811779 - L1 LINE L1 -1348 4798 4589 5402 247 24 22 chr3 5225382 5227714 -212809444 - L1PA6 LINE L1 -3060 4524 2231 1890 91 0 4 chr3 5228102 5228356 -212808802 - AluY SINE Alu 0 311 59 273 304 49 33 chr3 5228725 5228909 -212808249 - L1PA6 LINE L1 -5267 2307 2121 * 862 316 53 53 chr3 5228880 5229431 -212807727 - L1PA6 LINE L1 -6166 1408 858 2195 91 0 7 chr3 5229477 5229790 -212807368 - AluSx SINE Alu 0 311 1 1007 234 57 4 chr3 5229859 5230107 -212807051 - L1M4 LINE L1 -6280 262 2 377 216 157 48 chr3 5230259 5230483 -212806675 - MLT1H1 LTR MaLR -286 309 22 224 266 76 0 chr3 5230503 5230582 -212806576 - MIR SINE MIR -61 201 117 222 37 0 0 chr3 5230626 5230653 -212806505 + (CTATT)n Simple_repeat Simple_repeat 5 31 0 389 359 12 12 chr3 5231179 5231346 -212805812 + MIR SINE MIR 8 174 -88 23 33 0 0 chr3 5231728 5231758 -212805400 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr3 5231923 5231964 -212805194 + AT_rich Low_complexity Low_complexity 1 41 0 434 284 115 6 chr3 5233920 5234103 -212803055 - MIR SINE MIR -58 204 2 297 128 0 0 chr3 5234118 5234165 -212802993 + (TG)n Simple_repeat Simple_repeat 2 48 0 1243 282 104 32 chr3 5234385 5235002 -212802156 + MLT2F LTR ERVL 1 661 -2 21 0 0 0 chr3 5236308 5236329 -212800829 + AT_rich Low_complexity Low_complexity 1 21 0 310 229 72 12 chr3 5236375 5236458 -212800700 - L1MC4 LINE L1 -1339 6703 6616 236 369 92 14 chr3 5237588 5237729 -212799429 + MIR SINE MIR 41 192 -70 381 327 75 39 chr3 5237776 5238030 -212799128 - L2 LINE L2 -198 3074 2812 1404 167 38 38 chr3 5238248 5238511 -212798647 + MER7A DNA MER2_type 1 261 -85 1101 214 0 0 chr3 5238622 5238828 -212798330 - MER2 DNA MER2_type -139 206 1 467 250 0 0 chr3 5238828 5238915 -212798243 + MER7A DNA MER2_type 260 346 0 2007 293 58 23 chr3 5238931 5240052 -212797106 - L1MEc LINE L1 -4073 2323 1164 765 279 68 19 chr3 5240096 5240361 -212796797 - L1MEc LINE L1 -6082 314 37 1969 263 86 18 chr3 5240369 5241008 -212796150 + L1ME1 LINE L1 2237 2962 -3184 1431 187 50 25 chr3 5241008 5241291 -212795867 + AluJo SINE Alu 1 290 -22 1969 263 86 18 chr3 5241291 5241592 -212795566 + L1ME1 LINE L1 2962 3241 -2905 2759 240 54 40 chr3 5241614 5243373 -212793785 + L1ME1 LINE L1 4377 6159 -7 36 0 0 0 chr3 5243435 5243471 -212793687 + AT_rich Low_complexity Low_complexity 1 36 0 394 336 17 0 chr3 5243590 5243709 -212793449 - L2 LINE L2 0 3313 3193 1548 201 189 41 chr3 5243714 5244275 -212792883 - LTR48B LTR ERV1 0 644 1 391 381 11 16 chr3 5244365 5244554 -212792604 - L2 LINE L2 -251 3062 2875 285 294 0 24 chr3 5244924 5245050 -212792108 + GA-rich Low_complexity Low_complexity 4 126 0 206 232 0 0 chr3 5245509 5245565 -212791593 + T-rich Low_complexity Low_complexity 1 56 0 201 39 0 0 chr3 5245565 5245591 -212791567 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7684 17 0 0 chr3 5245592 5247219 -212789939 - L1PA3 LINE L1 -14 6141 4514 266 322 138 0 chr3 5247689 5247841 -212789317 + MIR SINE MIR 87 259 -3 405 273 11 0 chr3 5250645 5250733 -212786425 + L2 LINE L2 3195 3283 -30 267 376 30 15 chr3 5250856 5250989 -212786169 + MIR3 SINE MIR 33 167 -41 2624 109 5 11 chr3 5251516 5251893 -212785265 - THE1C LTR MaLR 0 375 1 1580 159 77 69 chr3 5252584 5252961 -212784197 - MLT1B LTR MaLR 0 390 11 25 0 0 0 chr3 5253198 5253223 -212783935 + AT_rich Low_complexity Low_complexity 1 25 0 2025 99 46 3 chr3 5253601 5253885 -212783273 - AluSx SINE Alu -16 296 1 30 0 0 0 chr3 5255507 5255537 -212781621 + AT_rich Low_complexity Low_complexity 1 30 0 257 177 131 98 chr3 5255997 5256099 -212781059 + MIR3 SINE MIR 56 166 -42 239 338 0 13 chr3 5256350 5256427 -212780731 - MIR SINE MIR -112 150 75 259 347 0 0 chr3 5256513 5256588 -212780570 - L3 LINE CR1 -196 1381 1307 482 347 73 32 chr3 5257290 5257662 -212779496 + MLT1J2 LTR MaLR 50 436 -14 22 0 0 0 chr3 5258298 5258320 -212778838 + AT_rich Low_complexity Low_complexity 1 22 0 293 243 78 39 chr3 5258987 5259105 -212778053 + MIR SINE MIR 2 119 -90 237 335 48 48 chr3 5259192 5259359 -212777799 - L3 LINE CR1 -103 1474 1308 190 212 30 0 chr3 5259362 5259395 -212777763 + MER5A DNA MER1_type 2 35 -154 351 157 34 0 chr3 5259509 5259598 -212777560 + CT-rich Low_complexity Low_complexity 5 96 0 351 176 11 77 chr3 5259603 5259694 -212777464 - MLT1E3 LTR MaLR -391 233 149 777 193 183 63 chr3 5259706 5259991 -212777167 - MLT1A1 LTR MaLR -46 319 1 3488 204 8 8 chr3 5259995 5260619 -212776539 - MLT1A1-int LTR MaLR -4 1731 1108 496 192 10 29 chr3 5260637 5260741 -212776417 - MLT1E3 LTR MaLR -472 152 51 606 234 22 0 chr3 5260751 5260888 -212776270 - MLT2F LTR ERVL -523 140 1 477 221 32 0 chr3 5260888 5260983 -212776175 + MER5A DNA MER1_type 92 189 0 769 236 113 5 chr3 5261527 5261646 -212775512 + MER46A DNA MER2_type 1 106 -2625 1961 107 95 76 chr3 5261646 5262066 -212775092 - MSTA LTR MaLR 0 428 1 769 236 113 5 chr3 5262066 5262158 -212775000 + MER46A DNA MER2_type 106 235 -1 514 276 43 19 chr3 5262771 5262981 -212774177 - MER58C DNA MER1_type 0 215 1 342 115 0 186 chr3 5264385 5264422 -212772736 - MER5C DNA MER1_type 0 324 282 1215 269 59 45 chr3 5264422 5264934 -212772224 + LTR40a LTR ERVL 1 519 0 1784 171 13 3 chr3 5264936 5265235 -212771923 + AluJb SINE Alu 1 302 -10 342 115 0 186 chr3 5265235 5265307 -212771851 - MER5C DNA MER1_type -43 281 233 1540 270 57 43 chr3 5265310 5265891 -212771267 + MLT1E LTR MaLR 1 589 -4 194 375 100 17 chr3 5265927 5266047 -212771111 + L2 LINE L2 3143 3272 0 1746 122 7 0 chr3 5266284 5266563 -212770595 - MER6A DNA MER2_type 0 605 325 331 177 32 0 chr3 5266613 5266675 -212770483 + MSTB1 LTR MaLR 1 64 -368 * 1844 154 36 3 chr3 5266668 5266974 -212770184 - MER6A DNA MER2_type -289 316 1 200 333 86 0 chr3 5267165 5267258 -212769900 + MIR3 SINE MIR 77 177 -31 1874 187 107 3 chr3 5267409 5267800 -212769358 + MSTB1 LTR MaLR 1 432 0 39 50 0 0 chr3 5267954 5268014 -212769144 + AT_rich Low_complexity Low_complexity 1 60 0 359 240 39 0 chr3 5273517 5273621 -212763537 + MER105 DNA DNA 42 149 -55 4526 64 33 4 chr3 5274589 5275589 -212761569 - MER11A LTR ERVK 0 1266 1 706 312 44 30 chr3 5276021 5276319 -212760839 - LTR16A LTR ERVL -79 371 70 612 331 57 75 chr3 5277200 5278286 -212758872 - L2 LINE L2 -9 3304 2228 317 109 0 0 chr3 5278536 5278582 -212758576 - MADE1 DNA Mariner -34 46 1 207 325 74 43 chr3 5278910 5279073 -212758085 - MIR SINE MIR -89 173 6 23 33 0 0 chr3 5280808 5280838 -212756320 + AT_rich Low_complexity Low_complexity 1 30 0 385 260 188 26 chr3 5280839 5280993 -212756165 - MIR SINE MIR -51 211 33 456 322 44 6 chr3 5282296 5282476 -212754682 + MIR SINE MIR 20 206 -56 324 286 211 6 chr3 5283813 5283974 -212753184 - L2 LINE L2 -24 3289 3096 609 214 17 79 chr3 5284965 5285143 -212752015 + L1MA9 LINE L1 6122 6288 -3 922 67 0 0 chr3 5285143 5285263 -212751895 - L1PB3 LINE L1 -9 6145 6026 21 0 0 0 chr3 5285265 5285286 -212751872 + AT_rich Low_complexity Low_complexity 1 21 0 2211 87 17 0 chr3 5285302 5285589 -212751569 + AluSc SINE Alu 3 294 -15 2398 44 3 0 chr3 5285726 5286020 -212751138 + AluY SINE Alu 1 295 -16 1629 158 14 14 chr3 5286104 5286389 -212750769 + AluJo SINE Alu 1 285 -27 251 123 31 15 chr3 5286389 5286454 -212750704 + (TA)n Simple_repeat Simple_repeat 1 66 0 5502 36 3 1 chr3 5286732 5287394 -212749764 - L1PA5 LINE L1 -1 6153 5491 328 196 36 36 chr3 5287498 5287666 -212749492 + (TTGTG)n Simple_repeat Simple_repeat 5 172 0 2218 194 21 8 chr3 5287905 5288384 -212748774 - L1MC3 LINE L1 -1 7784 7300 382 264 62 92 chr3 5288390 5288685 -212748473 + L1M4c LINE L1 1704 2140 -4423 1624 143 34 20 chr3 5288724 5289018 -212748140 + L1PA16 LINE L1 5866 6163 -3 2068 236 50 37 chr3 5289273 5290175 -212746983 - L1M4c LINE L1 -2481 3901 2988 932 223 32 77 chr3 5290162 5290645 -212746513 - L1M4c LINE L1 -3698 2684 2223 * 21 36 0 0 chr3 5292048 5292076 -212745082 + AT_rich Low_complexity Low_complexity 1 28 0 221 200 10 30 chr3 5292702 5292802 -212744356 + A-rich Low_complexity Low_complexity 3 100 0 2214 74 0 0 chr3 5294301 5294618 -212742540 - AluY SINE Alu 0 317 1 2253 83 27 10 chr3 5294713 5295013 -212742145 + AluSx SINE Alu 1 305 -7 4127 150 21 3 chr3 5295471 5296144 -212741014 + MER6 DNA MER2_type 181 865 0 981 200 69 12 chr3 5296149 5296275 -212740883 - L1ME LINE L1 -349 5817 5700 2115 128 0 0 chr3 5296275 5296573 -212740585 - AluSq SINE Alu -15 298 1 981 200 69 12 chr3 5296573 5296691 -212740467 - L1ME LINE L1 -466 5700 5559 * 2064 147 0 3 chr3 5296675 5296989 -212740169 + L1P LINE L1 5 317 -5829 655 241 6 6 chr3 5298426 5298592 -212738566 - L1 LINE L1 -1222 4924 4759 1441 130 43 9 chr3 5298594 5298824 -212738334 - MSTA LTR MaLR 0 428 191 1978 121 7 7 chr3 5298824 5299122 -212738036 - AluSq SINE Alu -15 298 1 236 174 65 0 chr3 5299781 5299827 -212737331 + MER41D LTR ERV1 509 557 0 2380 118 25 3 chr3 5301101 5301457 -212735701 + THE1B LTR MaLR 1 364 0 266 322 138 0 chr3 5301990 5302142 -212735016 - MIR SINE MIR -3 259 87 3399 69 0 4 chr3 5302593 5303045 -212734113 + L1P LINE L1 4497 4946 -1200 535 152 11 22 chr3 5303147 5303239 -212733919 - MER77 LTR ERV1 -148 457 367 405 0 0 0 chr3 5303271 5303316 -212733842 + (TG)n Simple_repeat Simple_repeat 2 46 0 434 154 154 0 chr3 5303327 5303437 -212733721 - L1MC4a LINE L1 -1382 6426 6300 467 227 156 14 chr3 5303491 5303677 -212733481 - L1MC4a LINE L1 -1486 6322 6086 1883 145 16 3 chr3 5303678 5303982 -212733176 + AluJb SINE Alu 1 308 -4 338 206 0 0 chr3 5303985 5304053 -212733105 + L1MC4 LINE L1 6636 6703 -1339 655 225 85 84 chr3 5304236 5304627 -212732531 - MSTB2 LTR MaLR -13 444 1 219 336 82 55 chr3 5304640 5304750 -212732408 - MIR3 SINE MIR -93 115 3 6776 67 8 5 chr3 5304903 5306566 -212730592 - L1PA7 LINE L1 -16 6138 4475 23 54 0 0 chr3 5307875 5307912 -212729246 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 5308155 5308179 -212728979 + AT_rich Low_complexity Low_complexity 1 24 0 1944 134 3 3 chr3 5308184 5308510 -212728648 + AluSx SINE Alu 3 328 0 261 277 69 54 chr3 5308910 5309040 -212728118 + L2 LINE L2 3140 3271 -1 264 242 200 11 chr3 5309050 5309145 -212728013 - L2 LINE L2 -1 3312 3200 271 234 404 0 chr3 5309346 5309440 -212727718 - L2 LINE L2 0 3272 3141 1662 220 77 46 chr3 5309446 5309928 -212727230 - MLT1D LTR MaLR -6 499 3 1006 289 86 42 chr3 5311452 5311978 -212725180 + MLT1H LTR MaLR 1 549 0 21 36 0 0 chr3 5312028 5312056 -212725102 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 5312164 5312187 -212724971 + AT_rich Low_complexity Low_complexity 1 23 0 351 0 0 0 chr3 5312459 5312498 -212724660 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 274 27 0 chr3 5312669 5312742 -212724416 + MIR SINE MIR 182 256 -6 1728 176 3 0 chr3 5313212 5313501 -212723657 + AluJo SINE Alu 1 290 -22 634 209 130 6 chr3 5313511 5313688 -212723470 + MER20 DNA MER1_type 1 199 -20 434 341 74 9 chr3 5314139 5314356 -212722802 - MIR SINE MIR -14 248 18 2286 113 0 6 chr3 5314855 5315166 -212721992 - AluSx SINE Alu -2 310 2 206 310 43 70 chr3 5315914 5316101 -212721057 + L2 LINE L2 2726 2907 -407 300 254 24 79 chr3 5316385 5316511 -212720647 + MIR SINE MIR 45 163 -99 560 284 126 48 chr3 5316621 5316892 -212720266 + LTR16C LTR ERVL 200 491 0 1976 134 16 3 chr3 5316912 5317219 -212719939 + AluSx SINE Alu 1 311 -1 521 237 44 7 chr3 5317345 5317480 -212719678 + MIR SINE MIR 12 151 -111 217 221 118 0 chr3 5317874 5317942 -212719216 - MIR SINE MIR -140 122 47 207 0 0 0 chr3 5317946 5317969 -212719189 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2975 83 0 2 chr3 5318055 5318452 -212718706 - L1PA8 LINE L1 0 6172 5777 291 294 0 73 chr3 5318753 5318862 -212718296 + MIR SINE MIR 45 145 -117 410 255 32 138 chr3 5319440 5319687 -212717471 + MER102a DNA MER1_type 92 312 -18 580 291 20 35 chr3 5319891 5320090 -212717068 - MIR SINE MIR -57 205 10 375 277 44 25 chr3 5320282 5320441 -212716717 + MER103 DNA DNA 5 166 0 198 307 92 43 chr3 5320491 5320652 -212716506 + MIR SINE MIR 2 169 -68 2114 105 3 3 chr3 5320855 5321141 -212716017 - AluSx SINE Alu -26 286 1 238 164 16 16 chr3 5321213 5321274 -212715884 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 304 0 87 0 chr3 5322135 5322181 -212714977 + A-rich Low_complexity Low_complexity 2 51 0 184 379 11 0 chr3 5322683 5322770 -212714388 - MIR SINE MIR -155 107 20 685 326 25 8 chr3 5323261 5323497 -212713661 + MIR SINE MIR 22 261 -1 307 0 0 0 chr3 5324159 5324193 -212712965 + (TTTA)n Simple_repeat Simple_repeat 2 128 0 635 186 0 0 chr3 5324193 5324295 -212712863 - AluJo SINE Alu -1 317 183 644 209 0 0 chr3 5324294 5324409 -212712749 - AluJo SINE Alu -187 115 1 282 287 30 20 chr3 5326730 5326831 -212710327 + MLT1H LTR MaLR 1 102 -447 25 0 0 0 chr3 5326957 5326982 -212710176 + AT_rich Low_complexity Low_complexity 1 25 0 236 222 0 16 chr3 5327264 5327327 -212709831 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 334 377 117 20 chr3 5327662 5328063 -212709095 - L2 LINE L2 -339 2975 2536 199 346 71 50 chr3 5328056 5328238 -212708920 + L2 LINE L2 2628 2813 -501 * 283 298 58 8 chr3 5328408 5328529 -212708629 - MER94 DNA DNA 0 134 8 292 380 29 37 chr3 5328576 5328821 -212708337 + MLT1K LTR MaLR 40 282 -306 1246 314 38 7 chr3 5328884 5329305 -212707853 + MER74C LTR ERVL 10 443 -17 2023 141 3 6 chr3 5329450 5329762 -212707396 - AluSq SINE Alu 0 313 3 489 325 5 26 chr3 5330020 5330214 -212706944 + MIR3 SINE MIR 19 208 0 288 249 44 88 chr3 5330820 5331025 -212706133 + MER46C DNA MER2_type 1 196 -142 249 209 0 95 chr3 5331060 5331165 -212705993 - L1MC4 LINE L1 -1339 6703 6609 1057 220 5 5 chr3 5331249 5331449 -212705709 + MER58A DNA MER1_type 1 200 -24 332 321 9 0 chr3 5333483 5333595 -212703563 - MIR3 SINE MIR -1 207 95 421 300 15 0 chr3 5333887 5334017 -212703141 - MER110 LTR ERV1 0 491 360 2566 149 9 41 chr3 5334031 5334474 -212702684 + MER57B LTR ERV1 1 429 -5 946 251 127 0 chr3 5334481 5334748 -212702410 - MER110 LTR ERV1 -145 346 46 504 267 72 59 chr3 5334802 5335023 -212702135 - MER58A DNA MER1_type 0 224 1 226 210 32 0 chr3 5335181 5335243 -212701915 + (TA)n Simple_repeat Simple_repeat 1 64 0 1304 280 9 69 chr3 5335574 5336099 -212701059 + L3 LINE CR1 795 1288 -289 414 321 81 43 chr3 5336664 5336873 -212700285 + MIR SINE MIR 46 262 0 735 288 113 14 chr3 5337983 5338501 -212698657 - MLT2E LTR ERVL -2 626 25 1597 169 4 22 chr3 5338766 5339044 -212698114 + AluJo SINE Alu 2 274 -38 300 27 0 0 chr3 5340636 5340676 -212696482 + (TG)n Simple_repeat Simple_repeat 1 77 0 300 27 0 0 chr3 5340676 5340713 -212696445 + (TG)n Simple_repeat Simple_repeat 2 38 0 621 207 201 73 chr3 5340930 5341205 -212695953 + MER63D DNA MER1_type 47 376 -685 212 0 0 35 chr3 5341205 5341234 -212695924 + (TA)n Simple_repeat Simple_repeat 1 28 0 621 207 201 73 chr3 5341234 5341301 -212695857 + MER63D DNA MER1_type 376 433 -628 1647 198 68 3 chr3 5341320 5341688 -212695470 + MER63D DNA MER1_type 666 1057 -4 22 35 0 0 chr3 5341792 5341821 -212695337 + AT_rich Low_complexity Low_complexity 1 29 0 194 258 91 45 chr3 5341842 5341908 -212695250 - MER5B DNA MER1_type -2 176 108 1073 242 81 36 chr3 5341913 5342114 -212695044 + L1ME3A LINE L1 5734 5924 -246 216 0 0 0 chr3 5342114 5342138 -212695020 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 5342138 5342354 -212694804 + L1ME3A LINE L1 5924 6170 0 2150 115 0 0 chr3 5342364 5342643 -212694515 + AluSg SINE Alu 1 279 -31 444 237 21 0 chr3 5342687 5342784 -212694374 + MER5B DNA MER1_type 77 175 -3 24 77 0 0 chr3 5342827 5342879 -212694279 + AT_rich Low_complexity Low_complexity 1 52 0 1234 160 20 116 chr3 5342918 5343212 -212693946 + Tigger7 DNA MER2_type 2 267 -2220 412 264 0 0 chr3 5343210 5343297 -212693861 + Tigger7 DNA MER2_type 2489 2575 -12 * 296 250 181 0 chr3 5343430 5343502 -212693656 + FLAM_A SINE Alu 33 117 -16 198 167 0 0 chr3 5343512 5343548 -212693610 + (TG)n Simple_repeat Simple_repeat 1 36 0 322 218 33 0 chr3 5343548 5343639 -212693519 + L1MCa LINE L1 1996 6983 -1339 281 188 0 0 chr3 5343669 5343733 -212693425 - L1MC4 LINE L1 -1339 6703 6640 813 217 0 30 chr3 5343739 5343905 -212693253 + FRAM SINE Alu 1 154 -22 6715 105 13 35 chr3 5343932 5344966 -212692192 + L1MA2 LINE L1 5137 6192 -112 1946 127 4 0 chr3 5344966 5345233 -212691925 + AluSx SINE Alu 1 268 -44 392 36 0 18 chr3 5345235 5345290 -212691868 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6715 105 13 35 chr3 5345290 5345446 -212691712 + L1MA2 LINE L1 6193 6304 0 461 176 22 22 chr3 5345450 5345467 -212691691 + GA-rich Low_complexity Low_complexity 2 18 -119 1682 170 26 13 chr3 5345467 5345773 -212691385 + AluJo SINE Alu 1 310 -2 461 176 22 22 chr3 5345773 5345891 -212691267 + GA-rich Low_complexity Low_complexity 17 137 0 23 0 0 0 chr3 5346980 5347003 -212690155 + AT_rich Low_complexity Low_complexity 1 23 0 825 330 41 39 chr3 5347151 5347690 -212689468 - L2 LINE L2 -2 3311 2772 2350 96 3 0 chr3 5347740 5348052 -212689106 + AluSp SINE Alu 1 313 0 238 111 0 0 chr3 5348662 5348698 -212688460 - MER5C DNA MER1_type 0 324 289 1271 275 59 45 chr3 5348699 5349211 -212687947 + LTR40a LTR ERVL 1 519 0 1770 134 17 7 chr3 5349213 5349505 -212687653 + AluY SINE Alu 1 295 -16 1700 170 48 0 chr3 5349589 5349715 -212687443 + AluSg SINE Alu 1 120 -190 405 39 0 0 chr3 5349715 5349766 -212687392 + (CA)n Simple_repeat Simple_repeat 2 52 0 1700 170 48 0 chr3 5349766 5349933 -212687225 + AluSg SINE Alu 120 308 -2 533 278 53 74 chr3 5350193 5350477 -212686681 + L2 LINE L2 2925 3202 -111 401 214 81 106 chr3 5350777 5351212 -212685946 + L1MC5 LINE L1 7518 7941 -20 886 242 57 0 chr3 5351298 5351509 -212685649 - MSTD LTR MaLR -11 385 163 3046 259 42 31 chr3 5351511 5352446 -212684712 - MSTD-int LTR MaLR -789 946 2 1817 178 30 35 chr3 5352448 5352846 -212684312 - MSTD LTR MaLR 0 396 1 254 278 0 0 chr3 5352847 5352901 -212684257 + L2 LINE L2 3242 3295 -18 21 0 0 0 chr3 5355372 5355393 -212681765 + AT_rich Low_complexity Low_complexity 1 21 0 493 275 38 26 chr3 5357571 5357761 -212679397 + MIR3 SINE MIR 6 208 -54 225 0 0 0 chr3 5358547 5358572 -212678586 + (CA)n Simple_repeat Simple_repeat 2 26 0 2062 112 0 7 chr3 5360258 5360545 -212676613 - AluSp SINE Alu 0 313 29 324 0 0 0 chr3 5361408 5361444 -212675714 + (TG)n Simple_repeat Simple_repeat 2 37 0 346 226 11 117 chr3 5361484 5361638 -212675520 - LTR48 LTR ERV1 -30 747 521 1469 149 54 144 chr3 5361645 5362109 -212675049 - LTR49 LTR ERV1 -170 425 4 21 0 0 0 chr3 5362203 5362224 -212674934 + AT_rich Low_complexity Low_complexity 1 21 0 334 313 47 0 chr3 5363240 5363368 -212673790 - MIR3 SINE MIR -5 203 70 180 225 42 42 chr3 5363358 5363429 -212673729 + L2 LINE L2 630 700 -2614 * 500 354 111 24 chr3 5363821 5364468 -212672690 - L2 LINE L2 -11 3302 2516 1536 201 3 11 chr3 5365026 5365310 -212671848 + AluJo SINE Alu 1 282 -30 267 325 67 17 chr3 5367836 5367956 -212669202 - MIR SINE MIR -108 154 29 2045 247 59 22 chr3 5368059 5368784 -212668374 + L1MB7 LINE L1 5239 5989 -195 238 150 0 0 chr3 5368879 5368919 -212668239 + L1MB7 LINE L1 6132 6171 -13 996 237 10 5 chr3 5369075 5369282 -212667876 - MER58A DNA MER1_type 0 224 17 297 164 0 36 chr3 5369358 5369413 -212667745 - MIR SINE MIR -209 53 1 21 36 0 0 chr3 5370531 5370559 -212666599 + AT_rich Low_complexity Low_complexity 1 28 0 963 144 33 93 chr3 5372546 5372761 -212664397 + MER67D LTR ERV1 1 202 -312 423 0 0 0 chr3 5372764 5372811 -212664347 + (TG)n Simple_repeat Simple_repeat 2 48 0 2331 123 3 6 chr3 5372828 5373187 -212663971 - L1PB1 LINE L1 0 6151 5794 180 0 0 0 chr3 5373187 5373207 -212663951 + (TA)n Simple_repeat Simple_repeat 1 20 0 281 98 49 0 chr3 5373207 5373248 -212663910 + L1P5 LINE L1 5684 5726 -425 734 113 0 0 chr3 5373253 5373368 -212663790 + L1P5 LINE L1 5675 5789 -362 2770 176 3 4 chr3 5373379 5374246 -212662912 - L1PB1 LINE L1 -479 5672 4806 412 222 134 8 chr3 5374248 5374450 -212662708 + MER67D LTR ERV1 233 514 0 2015 197 15 5 chr3 5375559 5375949 -212661209 + MSTD LTR MaLR 3 396 0 267 31 0 0 chr3 5376070 5376102 -212661056 + (TC)n Simple_repeat Simple_repeat 2 33 0 209 194 0 16 chr3 5376859 5376921 -212660237 + GA-rich Low_complexity Low_complexity 2 62 0 22 35 0 0 chr3 5377012 5377041 -212660117 + AT_rich Low_complexity Low_complexity 1 29 0 2925 195 40 15 chr3 5377149 5377830 -212659328 - L1MC2 LINE L1 -11 6333 5636 393 290 96 28 chr3 5378665 5379061 -212658097 - L1ME4a LINE L1 -70 6051 5629 29 28 0 0 chr3 5381719 5381755 -212655403 + AT_rich Low_complexity Low_complexity 1 36 0 5345 133 18 10 chr3 5381975 5383232 -212653926 + L1PB3 LINE L1 4887 6154 0 314 147 44 0 chr3 5383239 5383307 -212653851 - MER58 DNA MER1_type -62 2358 2288 2288 236 75 38 chr3 5383433 5384118 -212653040 + MER21B LTR ERV1 100 809 -54 1670 238 106 14 chr3 5384215 5384727 -212652431 - MLT1F1 LTR MaLR 0 567 9 972 278 126 68 chr3 5385414 5386479 -212650679 + L1MC4a LINE L1 5671 6797 -1011 600 228 11 97 chr3 5386513 5386843 -212650315 + L1ME4a LINE L1 5165 5464 -702 332 328 16 0 chr3 5386947 5387075 -212650083 - L1MC4 LINE L1 -606 7436 7307 642 186 57 52 chr3 5387075 5387269 -212649889 + MER63 DNA MER1_type 865 1059 -1 321 221 72 171 chr3 5387279 5387520 -212649638 + L1M4 LINE L1 2464 2632 -3514 1917 125 3 14 chr3 5387520 5387816 -212649342 - AluSx SINE Alu -17 295 3 321 221 72 171 chr3 5387816 5388071 -212649087 + L1M4 LINE L1 2632 2911 -3235 289 324 101 21 chr3 5388384 5388860 -212648298 + L1M4 LINE L1 3221 3734 -2412 1826 149 17 3 chr3 5389285 5389586 -212647572 + AluJb SINE Alu 1 305 -7 372 210 0 0 chr3 5389586 5389667 -212647491 + (TA)n Simple_repeat Simple_repeat 1 81 0 626 251 79 100 chr3 5389826 5390217 -212646941 - MSTD LTR MaLR -13 383 1 247 321 83 46 chr3 5390230 5390339 -212646819 - MIR3 SINE MIR -93 115 3 482 46 15 0 chr3 5390458 5390523 -212646635 + (TCTA)n Simple_repeat Simple_repeat 3 68 0 222 37 0 0 chr3 5390525 5390552 -212646606 + (TG)n Simple_repeat Simple_repeat 2 28 0 408 321 93 12 chr3 5390640 5390886 -212646272 + L1ME4a LINE L1 5599 5864 -257 330 143 0 14 chr3 5390925 5390995 -212646163 + L1MB7 LINE L1 6111 6179 -5 1632 161 14 14 chr3 5391331 5391616 -212645542 + AluJo SINE Alu 1 285 -27 233 113 28 28 chr3 5391616 5391681 -212645477 + (TA)n Simple_repeat Simple_repeat 1 65 0 41645 61 2 0 chr3 5391959 5398093 -212639065 - L1PA5 LINE L1 -1 6153 11 1819 168 0 19 chr3 5398843 5399158 -212638000 - AluJb SINE Alu -3 309 1 339 344 46 0 chr3 5399175 5399326 -212637832 + MIR SINE MIR 102 259 -3 2995 214 19 16 chr3 5400358 5400557 -212636601 - L1 LINE L1 -914 5232 5035 207 0 0 0 chr3 5400557 5400580 -212636578 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2995 214 19 16 chr3 5400580 5401123 -212636035 - L1 LINE L1 -1111 5035 4488 991 296 90 35 chr3 5402310 5402743 -212634415 + LTR16B LTR ERVL 8 464 0 291 28 0 0 chr3 5402759 5402795 -212634363 + (TG)n Simple_repeat Simple_repeat 2 37 0 500 186 0 16 chr3 5402808 5402937 -212634221 + (CATATA)n Simple_repeat Simple_repeat 4 130 0 205 300 10 40 chr3 5404315 5404415 -212632743 + L3b LINE CR1 1315 1411 -172 319 252 31 126 chr3 5404698 5404829 -212632329 + MER5B DNA MER1_type 19 134 -44 1829 122 8 0 chr3 5404829 5405083 -212632075 - AluSx SINE Alu -21 291 36 319 252 31 126 chr3 5405083 5405110 -212632048 + MER5B DNA MER1_type 134 162 -16 444 96 0 60 chr3 5405185 5405268 -212631890 + L1PA13 LINE L1 6075 6152 -11 21 0 0 0 chr3 5407362 5407383 -212629775 + AT_rich Low_complexity Low_complexity 1 21 0 2090 128 0 0 chr3 5407707 5408003 -212629155 - AluSx SINE Alu -15 297 2 183 283 0 19 chr3 5408013 5408066 -212629092 - L2 LINE L2 -4 3268 3217 1374 188 68 4 chr3 5408268 5408565 -212628593 + AluJo SINE Alu 2 315 0 941 292 131 43 chr3 5409015 5409164 -212627994 - HAL1 LINE L1 -909 1598 1463 1392 210 62 25 chr3 5409164 5409521 -212627637 - MLT1A2 LTR MaLR 0 374 5 941 292 131 43 chr3 5409521 5410252 -212626906 - HAL1 LINE L1 -1044 1463 641 2285 122 0 0 chr3 5410282 5410594 -212626564 + AluSx SINE Alu 1 312 0 657 287 0 53 chr3 5411578 5411825 -212625333 + MIR SINE MIR 15 248 -14 21 0 0 0 chr3 5411842 5411863 -212625295 + AT_rich Low_complexity Low_complexity 1 21 0 312 334 93 64 chr3 5413308 5413652 -212623506 - L2 LINE L2 0 3272 2919 819 208 26 26 chr3 5413741 5413933 -212623225 + MER3 DNA MER1_type 1 192 -17 380 378 11 6 chr3 5413991 5414171 -212622987 - L2 LINE L2 -535 2779 2599 12019 55 1 0 chr3 5414220 5416522 -212620636 + L1PA5 LINE L1 3848 6153 -1 540 260 80 35 chr3 5416849 5417049 -212620109 + MLT1K LTR MaLR 376 584 -4 26 0 0 0 chr3 5417547 5417573 -212619585 + AT_rich Low_complexity Low_complexity 1 26 0 279 193 9 23 chr3 5417649 5417768 -212619390 + MIR SINE MIR 86 261 -1 349 318 88 7 chr3 5418845 5418993 -212618165 + MIR SINE MIR 87 246 -16 39 22 0 0 chr3 5419050 5419096 -212618062 + AT_rich Low_complexity Low_complexity 1 46 0 1989 140 0 13 chr3 5419097 5419411 -212617747 - AluSx SINE Alu 0 312 3 214 137 39 39 chr3 5419510 5419561 -212617597 + A-rich Low_complexity Low_complexity 2 52 0 2508 112 99 7 chr3 5419802 5420261 -212616897 - LTR12 LTR ERV1 0 714 1 3284 135 19 17 chr3 5421132 5421658 -212615500 + MER1A DNA MER1_type 1 527 0 23 0 0 0 chr3 5423947 5423970 -212613188 + AT_rich Low_complexity Low_complexity 1 23 0 1110 180 23 59 chr3 5424053 5424338 -212612820 - AluJb SINE Alu 0 340 65 291 269 0 65 chr3 5425101 5425194 -212611964 - MER5B DNA MER1_type -91 87 1 436 270 43 9 chr3 5425346 5425461 -212611697 + MIR SINE MIR 1 119 -143 273 298 12 36 chr3 5425454 5425538 -212611620 - MIR SINE MIR -84 124 43 * 196 337 24 24 chr3 5425611 5425694 -212611464 + MIR3 SINE MIR 93 175 -33 632 294 131 0 chr3 5425708 5425929 -212611229 - MIR SINE MIR -10 252 3 24 0 0 0 chr3 5426874 5426898 -212610260 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 5426921 5426944 -212610214 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 5426969 5426990 -212610168 + AT_rich Low_complexity Low_complexity 1 21 0 1544 91 70 17 chr3 5426990 5427231 -212609927 - L1PA13 LINE L1 -1 6162 5909 432 0 0 0 chr3 5429339 5429387 -212607771 + (CA)n Simple_repeat Simple_repeat 2 49 0 294 303 148 68 chr3 5429820 5429982 -212607176 - MER5A DNA MER1_type -1 188 14 733 228 35 6 chr3 5431114 5431285 -212605873 + MER5B DNA MER1_type 3 178 0 546 276 83 11 chr3 5431335 5431516 -212605642 - MIR SINE MIR -33 229 36 750 261 18 0 chr3 5433128 5433293 -212603865 + MER45A DNA AcHobo 1 168 -10 311 296 85 63 chr3 5434066 5434465 -212602693 + L1 LINE L1 3111 3518 -2628 3707 192 40 34 chr3 5434539 5435397 -212601761 - MER21B LTR ERV1 0 863 1 199 250 108 42 chr3 5436795 5436915 -212600243 - L2 LINE L2 -229 3043 2916 193 381 12 0 chr3 5437168 5437252 -212599906 - L2 LINE L2 0 3272 3188 30 27 0 0 chr3 5438618 5438655 -212598503 + AT_rich Low_complexity Low_complexity 1 37 0 2330 268 73 46 chr3 5439004 5439475 -212597683 - L1ME3 LINE L1 0 6162 5705 1796 155 0 20 chr3 5439475 5439772 -212597386 - AluSx SINE Alu -21 291 1 2330 268 73 46 chr3 5439772 5441444 -212595714 - L1ME3 LINE L1 -457 5705 3943 1246 202 102 60 chr3 5441444 5441874 -212595284 - LTR47A LTR ERVL 0 452 5 2330 268 73 46 chr3 5441874 5442155 -212595003 - L1ME3 LINE L1 -2219 3943 3671 25 31 0 0 chr3 5442189 5442221 -212594937 + AT_rich Low_complexity Low_complexity 1 32 0 366 264 45 10 chr3 5442247 5442384 -212594774 - L1ME3 LINE L1 -2480 3666 3524 2287 29 11 4 chr3 5442714 5443072 -212594086 + AluY SINE Alu 1 360 0 249 338 0 0 chr3 5444079 5444156 -212593002 - MIR3 SINE MIR -7 201 125 209 269 90 67 chr3 5444275 5444409 -212592749 - MIR SINE MIR 0 262 126 299 333 38 50 chr3 5445072 5445231 -212591927 + MIR3 SINE MIR 27 183 -25 281 378 66 42 chr3 5446632 5446873 -212590285 - L3b LINE CR1 -20 1563 1317 257 314 6 70 chr3 5447374 5447427 -212589731 - MIR SINE MIR -109 153 98 3190 158 10 46 chr3 5447427 5447819 -212589339 + MER6A DNA MER2_type 2 364 -501 1704 166 3 28 chr3 5447819 5448109 -212589049 - AluJo SINE Alu -29 283 1 3190 158 10 46 chr3 5448109 5448343 -212588815 + MER6A DNA MER2_type 364 605 0 257 314 6 70 chr3 5448343 5448445 -212588713 - MIR SINE MIR -164 98 8 252 267 12 23 chr3 5448497 5448583 -212588575 + MIR SINE MIR 178 262 0 1751 181 7 13 chr3 5448618 5448917 -212588241 + AluJb SINE Alu 3 299 -13 183 42 0 0 chr3 5448917 5448941 -212588217 + (GA)n Simple_repeat Simple_repeat 2 25 0 180 278 188 21 chr3 5449572 5449716 -212587442 + MIR SINE MIR 49 216 -46 241 326 34 11 chr3 5449894 5449983 -212587175 + L2 LINE L2 2992 3082 -190 283 357 45 9 chr3 5450405 5450517 -212586641 + MIR SINE MIR 32 147 -115 323 305 103 33 chr3 5450738 5450951 -212586207 + MIR SINE MIR 4 231 -31 366 139 0 0 chr3 5451975 5452047 -212585111 + (CA)n Simple_repeat Simple_repeat 1 72 0 377 377 34 17 chr3 5452285 5452521 -212584637 - MIR SINE MIR 0 262 23 271 360 51 22 chr3 5453165 5453343 -212583815 + MIR SINE MIR 2 184 -78 899 301 57 57 chr3 5453601 5454150 -212583008 - MLT1H LTR MaLR 0 549 1 621 287 18 0 chr3 5454273 5454437 -212582721 - LTR33 LTR ERVL -354 167 1 429 274 48 43 chr3 5454447 5454633 -212582525 + MIR SINE MIR 6 192 -70 198 103 0 0 chr3 5454635 5454664 -212582494 + (TA)n Simple_repeat Simple_repeat 2 30 0 387 248 59 20 chr3 5455491 5455644 -212581514 + MER103 DNA DNA 6 164 -2 397 310 48 7 chr3 5456736 5456881 -212580277 - MIR SINE MIR -46 216 66 271 217 11 11 chr3 5457463 5457555 -212579603 + (TA)n Simple_repeat Simple_repeat 2 93 0 1127 221 69 1 chr3 5457692 5458011 -212579147 - MLT1D LTR MaLR 0 505 128 309 270 11 11 chr3 5458165 5458254 -212578904 + MER117 DNA MER1_type 2 90 -107 2647 112 3 3 chr3 5458308 5458683 -212578475 + THE1C LTR MaLR 1 375 0 30 69 0 0 chr3 5458913 5458971 -212578187 + AT_rich Low_complexity Low_complexity 1 58 0 346 308 147 53 chr3 5458995 5459430 -212577728 - L2 LINE L2 -12 3301 2826 2350 159 32 34 chr3 5461423 5461927 -212575231 - L1MA8 LINE L1 -4 6287 5785 180 260 6 172 chr3 5462130 5462299 -212574859 - MIR3 SINE MIR -65 143 3 * 513 315 211 28 chr3 5462299 5462964 -212574194 + L2 LINE L2 2304 3104 -168 320 296 68 31 chr3 5463445 5463607 -212573551 - MER102b DNA MER1_type 0 341 174 25 0 0 0 chr3 5464227 5464252 -212572906 + AT_rich Low_complexity Low_complexity 1 25 0 2248 56 3 0 chr3 5464300 5464616 -212572542 + L1PA8 LINE L1 5863 6179 0 22 21 0 62 chr3 5464705 5464753 -212572405 + AT_rich Low_complexity Low_complexity 1 45 0 331 331 18 18 chr3 5464862 5465025 -212572133 - L2 LINE L2 -4 3309 3147 840 131 0 0 chr3 5465165 5465287 -212571871 - FRAM SINE Alu -20 156 35 2211 121 3 6 chr3 5465459 5465772 -212571386 + AluSx SINE Alu 1 312 0 423 0 0 0 chr3 5465772 5465819 -212571339 + (TA)n Simple_repeat Simple_repeat 2 48 0 28 0 0 0 chr3 5466819 5466847 -212570311 + AT_rich Low_complexity Low_complexity 1 28 0 1725 111 4 12 chr3 5466885 5467129 -212570029 - AluSx SINE Alu -70 242 1 193 210 40 0 chr3 5467569 5467669 -212569489 + (TAAA)n Simple_repeat Simple_repeat 4 107 0 22 0 0 0 chr3 5467827 5467849 -212569309 + AT_rich Low_complexity Low_complexity 1 22 0 1495 219 148 37 chr3 5468477 5468905 -212568253 + MLT2B1 LTR ERVL 1 485 -35 300 27 0 0 chr3 5468905 5468942 -212568216 + (CA)n Simple_repeat Simple_repeat 1 37 0 1495 219 148 37 chr3 5468942 5468974 -212568184 + MLT2B1 LTR ERVL 485 512 -8 2379 132 3 19 chr3 5469079 5469449 -212567709 + THE1B LTR MaLR 1 364 0 450 323 30 6 chr3 5472608 5472772 -212564386 + MER117 DNA MER1_type 30 197 0 216 350 82 0 chr3 5475162 5475259 -212561899 - MIR3 SINE MIR -48 160 56 406 289 87 0 chr3 5475752 5475856 -212561302 + L2 LINE L2 3158 3270 -2 189 277 21 0 chr3 5478167 5478214 -212558944 + L2 LINE L2 2925 2972 -342 273 339 68 41 chr3 5478279 5478500 -212558658 + L2 LINE L2 3085 3311 -2 387 293 60 31 chr3 5478962 5479181 -212557977 - MIR SINE MIR -17 245 20 316 259 99 15 chr3 5479686 5479817 -212557341 + MIR SINE MIR 106 247 -15 1749 205 30 86 chr3 5479825 5480348 -212556810 + MLT1D LTR MaLR 1 618 -8 23 0 0 0 chr3 5481653 5481676 -212555482 + AT_rich Low_complexity Low_complexity 1 23 0 41926 34 25 2 chr3 5482014 5488025 -212549133 - L1PA2 LINE L1 0 6155 1 340 291 122 35 chr3 5489325 5489555 -212547603 - MIR SINE MIR -12 250 1 328 255 39 39 chr3 5490747 5490849 -212546309 + L1MC4 LINE L1 6602 6703 -1339 322 316 0 50 chr3 5490820 5490959 -212546199 - L1MC4 LINE L1 -1340 6702 6571 * 676 152 29 14 chr3 5491348 5491486 -212545672 - L1MB1 LINE L1 -6 6162 6023 2158 181 17 67 chr3 5491558 5492034 -212545124 + MER66A LTR ERV1 27 478 0 22 0 0 0 chr3 5493462 5493484 -212543674 + AT_rich Low_complexity Low_complexity 1 22 0 636 295 18 5 chr3 5494777 5494994 -212542164 + MER58A DNA MER1_type 2 221 -3 348 239 182 115 chr3 5495945 5495999 -212541159 - MER58A DNA MER1_type -2197 223 174 1131 124 31 26 chr3 5495999 5496193 -212540965 - L1PA16 LINE L1 -10 6156 5962 348 239 182 115 chr3 5496193 5496347 -212540811 - MER58A DNA MER1_type -2246 174 1 266 344 164 0 chr3 5496840 5496962 -212540196 + MIR SINE MIR 107 248 -14 217 273 0 0 chr3 5497020 5497075 -212540083 - L2 LINE L2 -5 3308 3254 269 306 189 0 chr3 5500518 5500629 -212536529 + MIR SINE MIR 20 151 -57 31 82 0 0 chr3 5501719 5501792 -212535366 + AT_rich Low_complexity Low_complexity 1 73 0 1964 142 10 0 chr3 5504705 5505008 -212532150 - AluSx SINE Alu -1 311 6 1187 46 0 0 chr3 5505148 5505299 -212531859 - L1PA4 LINE L1 -78 6077 5927 366 42 0 0 chr3 5505299 5505344 -212531814 + L1PA3 LINE L1 6105 6152 -3 261 238 138 0 chr3 5505362 5505442 -212531716 + L1MC5 LINE L1 7474 7564 -397 243 349 0 23 chr3 5506092 5506178 -212530980 - L2 LINE L2 -1 3312 3229 5014 208 89 67 chr3 5506636 5508182 -212528976 - MER45R DNA AcHobo -1 1580 1 1656 134 49 37 chr3 5508227 5508555 -212528603 + L1MA7 LINE L1 5956 6287 -4 315 303 91 51 chr3 5509409 5509584 -212527574 - MER5A DNA MER1_type -1 188 7 331 67 0 0 chr3 5509857 5509902 -212527256 - MADE1 DNA Mariner 0 80 36 29 0 0 0 chr3 5509903 5509932 -212527226 + AT_rich Low_complexity Low_complexity 1 29 0 696 236 42 23 chr3 5510245 5510508 -212526650 + L1MC5 LINE L1 7676 7943 -18 4418 186 14 44 chr3 5511500 5512480 -212524678 + L1MA9 LINE L1 5332 6282 -30 524 311 97 25 chr3 5512493 5513328 -212523830 - L1MEc LINE L1 -4716 1680 786 241 364 0 0 chr3 5514192 5514269 -212522889 - L2 LINE L2 -557 2757 2681 423 184 26 0 chr3 5514430 5514506 -212522652 - MER20 DNA MER1_type -133 86 9 951 279 114 30 chr3 5514515 5514953 -212522205 - L2 LINE L2 -690 2624 2150 180 210 37 0 chr3 5514984 5515065 -212522093 + (TA)n Simple_repeat Simple_repeat 1 84 0 969 313 93 8 chr3 5515122 5515604 -212521554 + HAL1 LINE L1 1259 1781 -726 260 240 80 0 chr3 5515612 5515687 -212521471 + HAL1 LINE L1 1950 2030 -477 1645 187 42 3 chr3 5516508 5516792 -212520366 - AluJo SINE Alu -17 295 1 22 0 0 0 chr3 5517399 5517421 -212519737 + AT_rich Low_complexity Low_complexity 1 22 0 469 248 132 45 chr3 5517441 5517707 -212519451 + L1ME2 LINE L1 5867 6155 -9 547 322 22 6 chr3 5517982 5518165 -212518993 + MIR SINE MIR 64 249 -13 474 248 33 62 chr3 5520887 5521097 -212516061 - L2 LINE L2 -1 3312 3109 25 75 0 0 chr3 5525520 5525573 -212511585 + AT_rich Low_complexity Low_complexity 1 53 0 454 311 41 15 chr3 5526657 5526853 -212510305 - MIR SINE MIR -11 251 51 204 179 0 0 chr3 5526963 5527002 -212510156 + (TATG)n Simple_repeat Simple_repeat 2 40 0 484 339 37 45 chr3 5527291 5527533 -212509625 + MIR SINE MIR 7 246 -16 1498 160 52 119 chr3 5528848 5529311 -212507847 - MSTB1 LTR MaLR 0 432 1 1986 142 3 0 chr3 5530164 5530460 -212506698 + AluSx SINE Alu 1 297 -15 182 296 0 0 chr3 5531525 5531569 -212505589 - MIR3 SINE MIR -157 51 8 386 299 92 51 chr3 5531681 5531898 -212505260 + MIR SINE MIR 19 244 -18 2466 157 25 11 chr3 5532228 5532667 -212504491 - Tigger2 DNA MER2_type -1 2717 2273 347 182 13 39 chr3 5532646 5532723 -212504435 - Tigger2 DNA MER2_type -2642 76 2 * 1949 120 0 0 chr3 5533152 5533427 -212503731 + AluSg SINE Alu 1 275 -35 225 0 0 0 chr3 5533430 5533455 -212503703 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 21 0 0 0 chr3 5534372 5534393 -212502765 + AT_rich Low_complexity Low_complexity 1 21 0 364 330 98 25 chr3 5535382 5535585 -212501573 + MIR SINE MIR 8 225 -37 32 0 0 0 chr3 5536630 5536662 -212500496 + AT_rich Low_complexity Low_complexity 1 32 0 186 311 66 66 chr3 5537127 5537278 -212499880 - MER5A DNA MER1_type -2 187 37 * 287 333 95 0 chr3 5537170 5537296 -212499862 + MER5A DNA MER1_type 52 189 0 182 287 194 19 chr3 5538526 5538634 -212498524 - MIR SINE MIR -65 143 17 196 329 68 0 chr3 5539280 5539353 -212497805 + MIR SINE MIR 184 261 -1 206 32 32 0 chr3 5539387 5539418 -212497740 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 1601 165 0 63 chr3 5539500 5539833 -212497325 - AluJo SINE Alu 0 312 1 304 322 50 3 chr3 5540404 5540516 -212496642 - MIR SINE MIR -73 135 31 351 238 95 0 chr3 5540569 5540653 -212496505 + L2 LINE L2 3180 3271 -1 22 70 0 0 chr3 5540725 5540768 -212496390 + AT_rich Low_complexity Low_complexity 1 43 0 362 299 28 19 chr3 5540778 5540885 -212496273 - L2 LINE L2 -15 3257 3150 22 0 0 0 chr3 5541187 5541209 -212495949 + AT_rich Low_complexity Low_complexity 1 22 0 237 326 12 12 chr3 5541226 5541312 -212495846 - MIR3 SINE MIR -110 98 13 190 398 54 0 chr3 5541697 5541790 -212495368 + MIR3 SINE MIR 15 112 -96 591 213 0 0 chr3 5542976 5543112 -212494046 + CT-rich Low_complexity Low_complexity 3 138 0 288 315 148 9 chr3 5544232 5544340 -212492818 - L2 LINE L2 0 3272 3150 390 333 13 19 chr3 5544596 5544755 -212492403 + Charlie8 DNA MER1_type 102 259 -2158 21 0 0 0 chr3 5545612 5545633 -212491525 + AT_rich Low_complexity Low_complexity 1 21 0 423 289 22 33 chr3 5545926 5546106 -212491052 + MIR SINE MIR 85 262 0 250 242 10 10 chr3 5546327 5546426 -212490732 + (TA)n Simple_repeat Simple_repeat 2 100 0 308 145 0 16 chr3 5546463 5546525 -212490633 + (TA)n Simple_repeat Simple_repeat 2 62 0 329 297 141 64 chr3 5547328 5547705 -212489453 + MLT1L LTR MaLR 98 503 -8 702 324 8 32 chr3 5549087 5549334 -212487824 + MIR SINE MIR 12 252 -10 201 74 0 0 chr3 5549343 5549370 -212487788 + (ATG)n Simple_repeat Simple_repeat 2 28 0 279 345 176 0 chr3 5549383 5549548 -212487610 + MIR SINE MIR 66 259 -3 228 314 0 0 chr3 5552268 5552338 -212484820 + MIR SINE MIR 51 120 -142 273 57 0 0 chr3 5552916 5552951 -212484207 + (CA)n Simple_repeat Simple_repeat 2 36 0 650 280 100 22 chr3 5554094 5554365 -212482793 - L2 LINE L2 -2 3311 3020 396 0 0 0 chr3 5555702 5555746 -212481412 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 519 101 13 0 chr3 5556326 5556405 -212480753 - MADE1 DNA Mariner 0 80 1 654 315 63 48 chr3 5556618 5557081 -212480077 + LTR16C LTR ERVL 1 470 -21 469 88 25 12 chr3 5557432 5557512 -212479646 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 526 310 88 52 chr3 5557704 5558207 -212478951 + MLT1K LTR MaLR 66 586 -2 2709 123 24 7 chr3 5558964 5559380 -212477778 + MSTA LTR MaLR 5 427 -1 382 250 37 9 chr3 5559384 5559492 -212477666 + MIR SINE MIR 128 238 -24 25 31 0 0 chr3 5559509 5559541 -212477617 + AT_rich Low_complexity Low_complexity 1 32 0 271 255 0 0 chr3 5559969 5560020 -212477138 - L2 LINE L2 -10 3262 3212 1440 168 80 77 chr3 5561531 5561883 -212475275 + MLT1A1 LTR MaLR 11 363 -2 261 226 130 75 chr3 5562023 5562169 -212474989 + MIR SINE MIR 96 249 -13 25 0 0 0 chr3 5562374 5562399 -212474759 + AT_rich Low_complexity Low_complexity 1 25 0 423 342 71 29 chr3 5562587 5562827 -212474331 - MIR SINE MIR -10 252 3 186 43 0 0 chr3 5563236 5563259 -212473899 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 461 283 76 60 chr3 5563462 5563830 -212473328 + L1ME4a LINE L1 5555 5928 -193 610 197 9 4 chr3 5563988 5564230 -212472928 + (TA)n Simple_repeat Simple_repeat 1 243 0 187 213 25 0 chr3 5564254 5564334 -212472824 + (TA)n Simple_repeat Simple_repeat 1 82 0 1818 113 4 0 chr3 5564481 5564728 -212472430 - AluSp SINE Alu -65 248 1 5790 243 28 20 chr3 5564768 5566739 -212470419 + L1MC/D LINE L1 3586 5570 -744 5738 195 38 15 chr3 5566732 5567125 -212470033 + L1MC3 LINE L1 6464 6847 -938 * 324 0 0 0 chr3 5567125 5567161 -212469997 + (CA)n Simple_repeat Simple_repeat 1 36 0 5738 195 38 15 chr3 5567161 5568040 -212469118 + L1MC3 LINE L1 6847 7765 -20 186 206 0 0 chr3 5568458 5568492 -212468666 + L2 LINE L2 3280 3313 0 185 352 111 37 chr3 5568706 5568922 -212468236 - MIR SINE MIR -16 246 15 1974 114 20 7 chr3 5570440 5570738 -212466420 - AluSg SINE Alu -8 302 1 323 311 87 6 chr3 5570743 5570904 -212466254 - L1ME4a LINE L1 -2 6119 5946 286 297 31 78 chr3 5570986 5571114 -212466044 + MIR SINE MIR 17 138 -124 440 321 32 43 chr3 5571126 5571403 -212465755 + L1MCb LINE L1 92 365 -6031 700 266 5 18 chr3 5571629 5571847 -212465311 + L1MEc LINE L1 715 929 -5467 * 1792 224 47 63 chr3 5571846 5572722 -212464436 + L1MCb LINE L1 333 1213 -4852 2304 100 0 0 chr3 5574115 5574425 -212462733 + AluSg SINE Alu 1 310 0 21 0 0 0 chr3 5574522 5574543 -212462615 + AT_rich Low_complexity Low_complexity 1 21 0 296 256 60 8 chr3 5574647 5574764 -212462394 + L1MC4 LINE L1 7918 8040 -2 962 149 11 0 chr3 5574825 5575000 -212462158 + CT-rich Low_complexity Low_complexity 4 180 0 2082 88 0 34 chr3 5575169 5575465 -212461693 + AluY SINE Alu 6 291 -20 345 295 94 62 chr3 5575498 5575722 -212461436 - MIR SINE MIR -13 249 19 276 321 37 28 chr3 5575749 5575858 -212461300 + MIR SINE MIR 30 139 -69 297 346 163 0 chr3 5576610 5576763 -212460395 + MER5A DNA MER1_type 10 187 -2 22 0 0 0 chr3 5577398 5577420 -212459738 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 5577429 5577452 -212459706 + (CAAAAA)n Simple_repeat Simple_repeat 3 25 0 186 43 0 0 chr3 5577795 5577818 -212459340 + (A)n Simple_repeat Simple_repeat 1 23 0 323 283 50 8 chr3 5577863 5577983 -212459175 - MER46C DNA MER2_type -129 209 85 24 67 0 0 chr3 5578275 5578320 -212458838 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 5578463 5578484 -212458674 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 5579860 5579884 -212457274 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 825 142 8 15 chr3 5580343 5580477 -212456681 - FLAM_C SINE Alu 0 133 1 1913 265 67 8 chr3 5580872 5581517 -212455641 - L1ME2 LINE L1 -17 6147 5465 190 197 45 0 chr3 5582166 5582232 -212454926 + GA-rich Low_complexity Low_complexity 4 72 0 307 361 32 32 chr3 5582842 5582997 -212454161 - MER5A DNA MER1_type 0 189 35 610 324 86 47 chr3 5583003 5583491 -212453667 + L3 LINE CR1 1065 1571 -6 3678 119 15 0 chr3 5584388 5584934 -212452224 + MER41A LTR ERV1 1 554 0 821 259 0 0 chr3 5585269 5585458 -212451700 - MER5A DNA MER1_type 0 189 1 2372 74 0 10 chr3 5585476 5585787 -212451371 + AluY SINE Alu 2 309 -2 286 198 0 99 chr3 5587366 5587447 -212449711 - MER66B LTR ERV1 -11 475 403 * 2216 164 57 33 chr3 5587424 5587880 -212449278 - MER41B LTR ERV1 -56 579 113 788 267 37 5 chr3 5588039 5588226 -212448932 + MER20 DNA MER1_type 1 193 -26 3370 84 8 73 chr3 5588226 5588773 -212448385 - L1M1 LINE L1 -3503 4062 3549 3086 57 0 86 chr3 5588773 5589251 -212447907 + L1PA7 LINE L1 5718 6154 0 3370 84 8 73 chr3 5589251 5589266 -212447892 - L1M1 LINE L1 -4016 3549 3535 205 318 0 0 chr3 5589852 5589915 -212447243 + MIR SINE MIR 184 246 -16 * 1869 299 120 15 chr3 5589914 5590917 -212446241 + L2 LINE L2 2185 3309 -4 2175 102 3 0 chr3 5591416 5591731 -212445427 - AluSq SINE Alu 0 313 1 21 36 0 0 chr3 5592158 5592186 -212444972 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5592194 5592467 -212444691 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr3 5593438 5593465 -212443693 + (TG)n Simple_repeat Simple_repeat 2 28 0 1801 118 92 0 chr3 5593712 5593984 -212443174 + AluSg SINE Alu 2 298 -12 403 276 118 0 chr3 5594242 5594369 -212442789 + MLT1E3 LTR MaLR 8 149 -505 974 258 57 8 chr3 5594397 5594645 -212442513 + MLT1E3 LTR MaLR 171 430 -194 2300 106 0 0 chr3 5594686 5594989 -212442169 + AluSx SINE Alu 3 305 -7 23 0 0 0 chr3 5595208 5595231 -212441927 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5595806 5596028 -212441130 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5596388 5596443 -212440715 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5596470 5596542 -212440616 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5596542 5596562 -212440596 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5596562 5596706 -212440452 - MIR SINE MIR -92 170 10 332 302 75 0 chr3 5597592 5597698 -212439460 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5597700 5597745 -212439413 + MIR SINE MIR 97 141 -121 2188 132 0 3 chr3 5597790 5598101 -212439057 + AluSx SINE Alu 3 312 0 310 252 126 17 chr3 5598277 5598396 -212438762 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5598516 5598718 -212438440 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5599440 5599510 -212437648 - L2 LINE L2 -942 2372 2302 1915 139 4 0 chr3 5599547 5599820 -212437338 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5599825 5599890 -212437268 - L2 LINE L2 -1078 2236 2171 196 333 0 13 chr3 5600544 5600619 -212436539 + MIR SINE MIR 168 241 -21 24 32 0 0 chr3 5601264 5601295 -212435863 + AT_rich Low_complexity Low_complexity 1 31 0 229 239 149 30 chr3 5603056 5603123 -212434035 - MIR SINE MIR -76 186 112 2422 135 3 3 chr3 5603191 5603553 -212433605 - THE1B LTR MaLR -1 363 2 1345 175 114 25 chr3 5604276 5604556 -212432602 + AluSx SINE Alu 6 310 -2 194 286 0 0 chr3 5604571 5604620 -212432538 - MIR SINE MIR -212 50 2 554 314 58 36 chr3 5606140 5606363 -212430795 + MIR SINE MIR 8 235 -27 984 172 0 0 chr3 5606464 5606615 -212430543 - FRAM SINE Alu -26 150 1 2575 50 0 0 chr3 5606824 5607123 -212430035 - AluY SINE Alu -12 299 1 25 0 0 0 chr3 5607723 5607748 -212429410 + AT_rich Low_complexity Low_complexity 1 25 0 289 301 0 32 chr3 5608005 5608098 -212429060 - MIR SINE MIR -95 167 78 690 130 290 0 chr3 5608361 5608499 -212428659 + AluSc SINE Alu 127 304 -5 324 283 75 12 chr3 5609450 5609623 -212427535 - MER113 DNA MER1_type? -304 217 34 3506 142 39 32 chr3 5610186 5610876 -212426282 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 5610876 5610898 -212426260 + AT_rich Low_complexity Low_complexity 1 22 0 235 182 55 0 chr3 5611221 5611276 -212425882 + L2 LINE L2 3250 3307 -6 438 335 182 23 chr3 5611334 5611773 -212425385 + L2 LINE L2 2804 3312 -1 409 302 63 6 chr3 5611923 5612082 -212425076 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 5612489 5612576 -212424582 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 291 291 60 46 chr3 5612638 5612789 -212424369 - MIR SINE MIR -105 157 5 508 361 47 29 chr3 5613896 5614237 -212422921 + LTR16C LTR ERVL 137 483 -8 313 286 24 0 chr3 5614268 5614352 -212422806 - L2 LINE L2 -6 3307 3222 2605 103 16 0 chr3 5614493 5614862 -212422296 - THE1C LTR MaLR 0 375 1 194 352 114 0 chr3 5615353 5615441 -212421717 + L3b LINE CR1 1459 1556 -27 202 182 0 0 chr3 5615563 5615596 -212421562 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 279 91 71 chr3 5615646 5615844 -212421314 - MIR SINE MIR -50 212 19 23 33 0 0 chr3 5615927 5615957 -212421201 + AT_rich Low_complexity Low_complexity 1 30 0 366 268 192 27 chr3 5616099 5616323 -212420835 + MIR SINE MIR 2 262 0 764 211 155 0 chr3 5616359 5616553 -212420605 + MER58A DNA MER1_type 1 224 0 327 345 84 20 chr3 5618228 5618718 -212418440 + L1ME4a LINE L1 5304 5824 -297 702 313 175 18 chr3 5618735 5619192 -212417966 + L2 LINE L2 2102 2630 -684 1485 213 0 11 chr3 5619283 5619569 -212417589 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 5619574 5619604 -212417554 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 865 195 6 18 chr3 5619604 5619773 -212417385 + FRAM SINE Alu 1 162 -14 261 83 0 0 chr3 5619996 5620032 -212417126 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 967 264 136 40 chr3 5620130 5620580 -212416578 + MLT1H LTR MaLR 3 495 -54 297 359 31 8 chr3 5620814 5620942 -212416216 + L2 LINE L2 3142 3272 0 277 244 100 91 chr3 5621035 5621265 -212415893 + L1ME3A LINE L1 5785 6016 -154 21 36 0 0 chr3 5621396 5621424 -212415734 + AT_rich Low_complexity Low_complexity 1 28 0 1379 176 114 29 chr3 5621588 5621861 -212415297 + MER1B DNA MER1_type 1 296 -43 300 267 83 25 chr3 5622956 5623076 -212414082 + L1ME4a LINE L1 5947 6073 -48 2048 332 60 34 chr3 5623771 5624994 -212412164 - L2 LINE L2 -2050 1264 11 244 268 0 18 chr3 5625213 5625269 -212411889 + MIR SINE MIR 47 101 -161 23 0 0 0 chr3 5625314 5625337 -212411821 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 5625479 5625535 -212411623 + A-rich Low_complexity Low_complexity 6 62 0 210 190 177 76 chr3 5626092 5626171 -212410987 + L2 LINE L2 3227 3313 0 554 229 179 0 chr3 5626367 5626507 -212410651 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 5626512 5626575 -212410583 + MIR SINE MIR 13 76 -186 363 89 0 0 chr3 5626575 5626631 -212410527 - AluSp/q SINE Alu -3 300 245 1964 115 0 0 chr3 5626631 5626891 -212410267 - AluSq SINE Alu -33 280 21 420 262 40 24 chr3 5626891 5627017 -212410141 + MIR SINE MIR 61 188 -74 186 43 0 0 chr3 5628261 5628284 -212408874 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 296 291 70 12 chr3 5628328 5628500 -212408658 + L1ME3A LINE L1 5039 5220 -926 1567 262 89 46 chr3 5628547 5629378 -212407780 + L1ME3A LINE L1 5288 6154 -16 1438 111 65 0 chr3 5629413 5629629 -212407529 - MER30 DNA MER1_type 0 230 1 3100 101 28 4 chr3 5629755 5630112 -212407046 - L1PB1 LINE L1 0 6151 5776 1038 39 24 19 chr3 5630112 5630321 -212406837 + (TA)n Simple_repeat Simple_repeat 1 210 0 3100 101 28 4 chr3 5630321 5630424 -212406734 - L1PB1 LINE L1 -375 5776 5677 1958 113 57 104 chr3 5630424 5630894 -212406264 + LTR7 LTR ERV1 1 448 -2 505 84 0 0 chr3 5630896 5630967 -212406191 + HERVH LTR ERV1 1 71 -7642 * 13507 132 25 24 chr3 5630947 5633395 -212403763 + HERVH LTR ERV1 437 2995 -4718 964 127 7 0 chr3 5633374 5633524 -212403634 + HERVH LTR ERV1 3140 3290 -4423 * 1027 136 6 12 chr3 5633514 5633676 -212403482 + HERVH LTR ERV1 3492 3652 -4061 * 4585 59 5 10 chr3 5633668 5634279 -212402879 + HERVH LTR ERV1 7106 7713 0 1704 110 54 156 chr3 5634279 5634778 -212402380 + LTR7 LTR ERV1 1 448 -2 5570 187 3 5 chr3 5634803 5636419 -212400739 - L1P5 LINE L1 -470 5681 4069 1139 231 8 0 chr3 5636407 5636675 -212400483 - L1 LINE L1 -2686 4176 3907 * 12330 130 86 15 chr3 5636673 5638418 -212398740 - L1PBa LINE L1 -3257 3605 1590 2357 87 0 3 chr3 5638418 5638716 -212398442 - AluY SINE Alu -12 299 3 12330 130 86 15 chr3 5638716 5639744 -212397414 - L1PBa LINE L1 -5272 1590 636 1037 159 20 0 chr3 5639746 5639941 -212397217 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 5640044 5640081 -212397077 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 5641298 5641320 -212395838 + AT_rich Low_complexity Low_complexity 1 22 0 276 340 60 0 chr3 5641345 5641445 -212395713 + MIR SINE MIR 57 162 -100 2483 69 0 3 chr3 5641758 5642063 -212395095 - AluSg SINE Alu -6 304 1 768 256 67 0 chr3 5642821 5643016 -212394142 + MIR SINE MIR 28 235 -27 224 295 152 0 chr3 5643778 5643883 -212393275 - MIR3 SINE MIR -25 183 63 889 197 57 0 chr3 5644321 5644514 -212392644 - LTR16A1 LTR ERVL 0 457 254 403 344 42 47 chr3 5644741 5644933 -212392225 + MIR SINE MIR 20 210 -52 213 363 24 24 chr3 5645172 5645340 -212391818 - MIR SINE MIR -92 170 3 263 203 14 0 chr3 5646438 5646507 -212390651 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1209 243 42 48 chr3 5648676 5649158 -212388000 - MER39 LTR ERV1 -20 687 1 831 167 0 0 chr3 5649338 5649470 -212387688 + AluSq/x SINE Alu 1 132 -181 2153 122 7 7 chr3 5650470 5650774 -212386384 + AluSx SINE Alu 1 304 -8 213 94 0 0 chr3 5650816 5650848 -212386310 + (TG)n Simple_repeat Simple_repeat 1 32 0 2274 151 0 34 chr3 5650946 5651383 -212385775 - L1MA6 LINE L1 -1 6299 5878 237 209 233 12 chr3 5651384 5651470 -212385688 + MER5A DNA MER1_type 77 181 -8 209 393 14 48 chr3 5651489 5651634 -212385524 + MIR SINE MIR 50 189 -73 353 250 46 46 chr3 5652168 5652276 -212384882 - MIR3 SINE MIR -47 161 54 21 0 0 0 chr3 5652426 5652447 -212384711 + AT_rich Low_complexity Low_complexity 1 21 0 1305 99 42 0 chr3 5652622 5652814 -212384344 + L1PA13 LINE L1 5963 6162 -1 247 111 19 19 chr3 5654242 5654296 -212382862 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 210 67 67 0 chr3 5654324 5654369 -212382789 + CT-rich Low_complexity Low_complexity 1 48 0 603 236 15 64 chr3 5654423 5654626 -212382532 + L1ME3 LINE L1 5940 6132 -30 601 233 114 52 chr3 5654929 5655156 -212382002 - L1MC4 LINE L1 -1 7873 7662 1592 177 69 0 chr3 5655156 5655444 -212381714 - AluJo SINE Alu -4 308 1 601 233 114 52 chr3 5655444 5655486 -212381672 - L1MC4 LINE L1 -212 7662 7624 1459 198 50 3 chr3 5655486 5655784 -212381374 - AluJb SINE Alu 0 312 1 601 233 114 52 chr3 5655784 5655918 -212381240 - L1MC4 LINE L1 -250 7624 7426 480 258 42 42 chr3 5656189 5656379 -212380779 - L1MC4a LINE L1 -439 7369 7180 525 277 63 29 chr3 5656503 5656638 -212380520 - L1MC4 LINE L1 -1081 6961 6813 203 0 0 36 chr3 5656638 5656666 -212380492 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 5656666 5656768 -212380390 - L1MC4 LINE L1 -1229 6813 6716 322 261 12 0 chr3 5656830 5656924 -212380234 - L1MC4 LINE L1 -1458 6545 6443 421 251 127 59 chr3 5657629 5658107 -212379051 + MER34B LTR ERV1 6 565 0 21 36 0 0 chr3 5658446 5658474 -212378684 + AT_rich Low_complexity Low_complexity 1 28 0 200 83 0 28 chr3 5658524 5658560 -212378598 + (CAT)n Simple_repeat Simple_repeat 2 36 0 276 367 39 8 chr3 5658560 5658688 -212378470 - MIR3 SINE MIR -70 138 7 291 353 0 17 chr3 5658797 5658913 -212378245 + MIR SINE MIR 33 146 -62 1210 254 90 95 chr3 5660175 5660459 -212376699 + HAL1b LINE L1 83 367 -981 1396 196 28 35 chr3 5660459 5660744 -212376414 + AluJo SINE Alu 1 283 -19 1210 254 90 95 chr3 5660744 5660908 -212376250 + HAL1b LINE L1 367 530 -818 2483 81 0 3 chr3 5660908 5661217 -212375941 + AluSq SINE Alu 1 308 -5 1210 254 90 95 chr3 5661217 5662039 -212375119 + HAL1b LINE L1 530 1348 0 313 301 49 42 chr3 5662982 5663125 -212374033 - L1MC4 LINE L1 -1340 6702 6559 540 141 12 0 chr3 5663160 5663245 -212373913 + AluJ/FLAM SINE Alu 1 86 -226 1262 249 34 25 chr3 5664462 5664787 -212372371 + MER45C DNA AcHobo 626 953 0 318 266 53 21 chr3 5664787 5664881 -212372277 - MIR SINE MIR -138 124 28 280 100 0 50 chr3 5665103 5665163 -212371995 + (TTCCC)n Simple_repeat Simple_repeat 4 60 0 713 333 17 8 chr3 5666676 5666916 -212370242 - MIR SINE MIR -18 244 3 220 321 44 57 chr3 5667004 5667163 -212369995 - L2 LINE L2 -182 3090 2934 22 0 0 0 chr3 5667701 5667723 -212369435 + AT_rich Low_complexity Low_complexity 1 22 0 2326 291 105 32 chr3 5667723 5669364 -212367794 - L2 LINE L2 0 3313 1266 346 281 31 62 chr3 5669444 5669636 -212367522 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr3 5669636 5669688 -212367470 - L1MB8 LINE L1 0 6178 6127 846 204 25 0 chr3 5669691 5669887 -212367271 + LTR37A LTR ERV1 218 418 -8 1708 215 52 48 chr3 5670151 5670654 -212366504 - MLT1D LTR MaLR 0 505 1 1914 147 47 26 chr3 5671398 5671739 -212365419 - MER7A DNA MER2_type 0 346 1 2391 46 0 10 chr3 5672914 5673255 -212363903 - AluY SINE Alu 0 311 1 340 272 99 74 chr3 5673629 5673912 -212363246 - L1ME4a LINE L1 -221 5900 5611 1679 168 30 16 chr3 5674244 5674370 -212362788 + AluJb SINE Alu 1 124 -188 333 0 0 0 chr3 5674370 5674407 -212362751 + (CA)n Simple_repeat Simple_repeat 2 38 0 1679 168 30 16 chr3 5674407 5674584 -212362574 + AluJb SINE Alu 124 308 -4 1551 174 87 0 chr3 5675173 5675438 -212361720 + AluSx SINE Alu 1 288 -24 1347 237 47 60 chr3 5675961 5676027 -212361131 - MLT1C LTR MaLR 0 467 402 1880 173 0 3 chr3 5676027 5676333 -212360825 + AluJb SINE Alu 1 305 -7 1347 237 47 60 chr3 5676333 5676734 -212360424 - MLT1C LTR MaLR -65 402 6 1999 149 10 0 chr3 5676759 5677067 -212360091 - AluSq SINE Alu -2 311 1 249 244 58 35 chr3 5677183 5677269 -212359889 + MER103 DNA DNA 69 156 -10 389 232 125 9 chr3 5677713 5677825 -212359333 - MIR SINE MIR -64 198 74 285 326 0 21 chr3 5678647 5678742 -212358416 + L2 LINE L2 3219 3311 -2 271 231 66 55 chr3 5678947 5679038 -212358120 - L2 LINE L2 -1 3312 3221 23 0 0 0 chr3 5679585 5679608 -212357550 + AT_rich Low_complexity Low_complexity 1 23 0 2352 224 20 27 chr3 5680098 5680660 -212356498 - MER74A LTR ERVL 0 558 1 486 151 151 129 chr3 5680702 5680927 -212356231 + MER106A DNA MER1_type 1 230 -6 237 208 57 0 chr3 5681463 5681516 -212355642 + U6 snRNA snRNA 24 79 -28 387 262 16 8 chr3 5681571 5681697 -212355461 + L1ME2 LINE L1 6038 6164 0 523 306 36 39 chr3 5681942 5682183 -212354975 - MIR SINE MIR 0 262 23 213 341 32 32 chr3 5683092 5683215 -212353943 - L2 LINE L2 -217 3055 2933 1900 250 120 56 chr3 5683608 5684356 -212352802 - MER21B LTR ERV1 -48 815 20 320 235 20 71 chr3 5684357 5684455 -212352703 - MER21B LTR ERV1 -759 104 12 273 373 55 39 chr3 5685108 5685140 -212352018 + MIR3 SINE MIR 1 31 -177 1464 163 22 117 chr3 5685140 5685552 -212351606 + MLT1A2 LTR MaLR 2 374 0 273 373 55 39 chr3 5685552 5685671 -212351487 + MIR3 SINE MIR 31 155 -53 382 237 21 0 chr3 5685719 5685812 -212351346 - MER117 DNA MER1_type -35 162 68 284 0 28 0 chr3 5686429 5686465 -212350693 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 394 267 298 0 chr3 5687721 5687852 -212349306 + MER45A DNA AcHobo 1 170 -8 530 253 222 0 chr3 5689639 5689833 -212347325 - MIR SINE MIR -21 241 5 196 231 0 19 chr3 5689861 5689913 -212347245 - MIR SINE MIR -32 230 180 236 366 0 0 chr3 5690028 5690110 -212347048 + Charlie1 DNA MER1_type 1 82 -2679 27 29 0 0 chr3 5690573 5690607 -212346551 + AT_rich Low_complexity Low_complexity 1 34 0 1925 262 59 23 chr3 5691239 5691811 -212345347 + MLT1E LTR MaLR 1 593 0 26 30 0 0 chr3 5692109 5692142 -212345016 + AT_rich Low_complexity Low_complexity 1 33 0 211 374 84 7 chr3 5694628 5694783 -212342375 - MIR SINE MIR -50 212 46 228 213 0 0 chr3 5695265 5695326 -212341832 + CT-rich Low_complexity Low_complexity 2 62 0 388 266 132 60 chr3 5695375 5695739 -212341419 + L1MCc LINE L1 23 412 -6011 1630 263 89 30 chr3 5695989 5696171 -212340987 + L1MCc LINE L1 828 998 -5632 2120 184 26 26 chr3 5696171 5696595 -212340563 + MSTB LTR MaLR 1 424 -2 1630 263 89 30 chr3 5696595 5697259 -212339899 + L1MCc LINE L1 998 1736 -4894 2350 106 0 0 chr3 5697306 5697608 -212339550 + AluSx SINE Alu 1 302 -10 789 273 28 22 chr3 5697662 5698094 -212339064 + L1MCc LINE L1 2138 2478 -4463 667 276 98 33 chr3 5698085 5698685 -212338473 - L1MC4 LINE L1 -127 7681 7186 * 1685 118 33 0 chr3 5699088 5699333 -212337825 - AluSp SINE Alu -22 291 39 499 327 69 98 chr3 5699354 5700136 -212337022 + L2 LINE L2 2218 2976 -338 1608 172 48 0 chr3 5700262 5700552 -212336606 - AluJb SINE Alu -8 304 1 249 316 89 0 chr3 5700654 5700733 -212336425 + L2 LINE L2 3150 3235 -37 229 257 86 29 chr3 5700735 5700805 -212336353 - L2 LINE L2 -8 3305 3232 403 327 25 6 chr3 5701541 5701700 -212335458 - MIR3 SINE MIR -2 206 45 619 256 45 25 chr3 5701956 5702155 -212335003 + MIR SINE MIR 46 248 -14 216 350 82 0 chr3 5704693 5704790 -212332368 - MIR3 SINE MIR -48 160 56 406 289 87 0 chr3 5705283 5705387 -212331771 + L2 LINE L2 3158 3270 -2 189 277 21 0 chr3 5707697 5707744 -212329414 + L2 LINE L2 2925 2972 -342 270 339 68 41 chr3 5707809 5708030 -212329128 + L2 LINE L2 3085 3311 -2 392 287 64 35 chr3 5708492 5708711 -212328447 - MIR SINE MIR -17 245 20 310 259 99 15 chr3 5709216 5709347 -212327811 + MIR SINE MIR 106 247 -15 1759 203 30 86 chr3 5709355 5709878 -212327280 + MLT1D LTR MaLR 1 618 -8 23 0 0 0 chr3 5711183 5711206 -212325952 + AT_rich Low_complexity Low_complexity 1 23 0 42095 35 25 2 chr3 5711544 5717555 -212319603 - L1PA2 LINE L1 0 6155 1 338 291 122 35 chr3 5718855 5719085 -212318073 - MIR SINE MIR -12 250 1 338 310 20 0 chr3 5720277 5720377 -212316781 + L1MC4 LINE L1 6602 6703 -1339 316 316 0 50 chr3 5720356 5720495 -212316663 - L1MC4 LINE L1 -1340 6702 6571 * 676 152 29 14 chr3 5720884 5721022 -212316136 - L1MB1 LINE L1 -6 6162 6023 2173 181 17 67 chr3 5721094 5721570 -212315588 + MER66A LTR ERV1 27 478 0 22 0 0 0 chr3 5722998 5723020 -212314138 + AT_rich Low_complexity Low_complexity 1 22 0 645 295 18 5 chr3 5724312 5724529 -212312629 + MER58A DNA MER1_type 2 221 -3 348 239 182 115 chr3 5725480 5725534 -212311624 - MER58A DNA MER1_type -2197 223 174 1120 129 31 26 chr3 5725534 5725728 -212311430 - L1PA16 LINE L1 -10 6156 5962 348 239 182 115 chr3 5725728 5725882 -212311276 - MER58A DNA MER1_type -2246 174 1 265 344 164 0 chr3 5726374 5726496 -212310662 + MIR SINE MIR 107 248 -14 221 273 0 0 chr3 5726554 5726609 -212310549 - L2 LINE L2 -5 3308 3254 269 306 189 0 chr3 5730052 5730163 -212306995 + MIR SINE MIR 20 151 -57 31 82 0 0 chr3 5731253 5731326 -212305832 + AT_rich Low_complexity Low_complexity 1 73 0 1988 142 10 0 chr3 5734239 5734542 -212302616 - AluSx SINE Alu -1 311 6 1201 46 0 0 chr3 5734682 5734833 -212302325 - L1PA4 LINE L1 -78 6077 5927 363 42 0 0 chr3 5734833 5734878 -212302280 + L1PA3 LINE L1 6105 6152 -3 254 238 138 0 chr3 5734896 5734976 -212302182 + L1MC5 LINE L1 7474 7564 -397 239 356 22 11 chr3 5735631 5735721 -212301437 - L2 LINE L2 0 3313 3223 4734 199 107 39 chr3 5736174 5737446 -212299712 - MER45R DNA AcHobo -1 1580 222 260 130 0 0 chr3 5737590 5737636 -212299522 - MER45C DNA AcHobo -813 140 95 2005 114 20 7 chr3 5738327 5738625 -212298533 - AluSg SINE Alu -8 302 1 322 311 87 6 chr3 5738630 5738791 -212298367 - L1ME4a LINE L1 -2 6119 5946 281 297 31 78 chr3 5738873 5739001 -212298157 + MIR SINE MIR 17 138 -124 429 321 32 43 chr3 5739013 5739290 -212297868 + L1MCb LINE L1 92 365 -6031 679 266 5 18 chr3 5739516 5739734 -212297424 + L1MEc LINE L1 715 929 -5467 * 1759 224 47 63 chr3 5739733 5740609 -212296549 + L1MCb LINE L1 333 1213 -4852 2076 128 0 0 chr3 5742002 5742300 -212294858 + AluSg SINE Alu 1 298 -12 403 276 118 0 chr3 5742558 5742685 -212294473 + MLT1E3 LTR MaLR 8 149 -505 974 258 57 8 chr3 5742713 5742961 -212294197 + MLT1E3 LTR MaLR 171 430 -194 2300 106 0 0 chr3 5743002 5743305 -212293853 + AluSx SINE Alu 3 305 -7 21 43 0 0 chr3 5743524 5743547 -212293611 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5744122 5744344 -212292814 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5744704 5744759 -212292399 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5744786 5744858 -212292300 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5744858 5744878 -212292280 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5744878 5745022 -212292136 - MIR SINE MIR -92 170 10 332 302 75 0 chr3 5745908 5746014 -212291144 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5746016 5746061 -212291097 + MIR SINE MIR 97 141 -121 2188 132 0 3 chr3 5746106 5746417 -212290741 + AluSx SINE Alu 3 312 0 310 252 126 17 chr3 5746593 5746712 -212290446 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5746832 5747034 -212290124 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5747756 5747826 -212289332 - L2 LINE L2 -942 2372 2302 1915 139 4 0 chr3 5747863 5748136 -212289022 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5748141 5748206 -212288952 - L2 LINE L2 -1078 2236 2171 196 333 0 13 chr3 5748860 5748935 -212288223 + MIR SINE MIR 168 241 -21 24 32 0 0 chr3 5749580 5749611 -212287547 + AT_rich Low_complexity Low_complexity 1 31 0 987 74 0 15 chr3 5750577 5750712 -212286446 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr3 5751149 5751177 -212285981 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5751185 5751458 -212285700 + AluSx SINE Alu 1 291 -21 340 272 99 74 chr3 5751942 5752225 -212284933 - L1ME4a LINE L1 -221 5900 5611 2191 124 0 3 chr3 5752552 5752859 -212284299 + AluSx SINE Alu 1 306 -6 276 340 60 0 chr3 5753172 5753272 -212283886 - MIR SINE MIR -100 162 57 22 0 0 0 chr3 5753297 5753319 -212283839 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 5754536 5754573 -212282585 + AT_rich Low_complexity Low_complexity 1 37 0 1037 159 20 0 chr3 5754676 5754871 -212282287 + L1PBa LINE L1 2 200 -6663 3402 120 23 0 chr3 5754873 5755901 -212281257 + L1PBa LINE L1 636 1834 -5029 1502 92 7 63 chr3 5755901 5756204 -212280954 + AluY SINE Alu 3 288 -23 211 197 45 0 chr3 5761929 5761995 -212275163 + (CCAA)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr3 5762504 5762529 -212274629 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 5767064 5767086 -212270072 + AT_rich Low_complexity Low_complexity 1 22 0 192 111 0 0 chr3 5767165 5767201 -212269957 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr3 5767290 5767316 -212269842 + AT_rich Low_complexity Low_complexity 1 26 0 716 81 52 17 chr3 5767368 5767540 -212269618 + (CAAA)n Simple_repeat Simple_repeat 2 179 0 216 0 0 0 chr3 5767958 5767982 -212269176 + (T)n Simple_repeat Simple_repeat 1 24 0 183 42 0 0 chr3 5768618 5768642 -212268516 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 3951 143 53 18 chr3 5773254 5773411 -212263747 - L1PBa LINE L1 -4873 1990 1840 2357 87 0 3 chr3 5773411 5773709 -212263449 - AluY SINE Alu -12 299 3 3951 143 53 18 chr3 5773709 5774596 -212262562 - L1PBa LINE L1 -5023 1840 765 246 192 0 0 chr3 5776957 5777009 -212260149 + A-rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 5777153 5777176 -212259982 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 5778736 5778758 -212258400 + AT_rich Low_complexity Low_complexity 1 22 0 322 297 0 0 chr3 5782938 5783029 -212254129 + L1MC4 LINE L1 6613 6703 -1339 198 0 0 0 chr3 5783082 5783104 -212254054 + (TA)n Simple_repeat Simple_repeat 2 23 0 3927 148 26 8 chr3 5784053 5785179 -212251979 + L1PBa LINE L1 2460 3605 -3257 1139 231 8 0 chr3 5785177 5785445 -212251713 + L1 LINE L1 3907 4176 -2686 * 7948 118 6 10 chr3 5785435 5786684 -212250474 + L1P LINE L1 4071 5315 -831 732 134 0 0 chr3 5786853 5786965 -212250193 + MER41A LTR ERV1 443 554 0 821 259 0 0 chr3 5787300 5787489 -212249669 - MER5A DNA MER1_type 0 189 1 2396 68 0 10 chr3 5787507 5787817 -212249341 + AluY SINE Alu 2 308 -3 286 198 0 99 chr3 5789397 5789478 -212247680 - MER66B LTR ERV1 -11 475 403 * 2192 167 57 33 chr3 5789455 5789911 -212247247 - MER41B LTR ERV1 -56 579 113 788 267 37 5 chr3 5790070 5790257 -212246901 + MER20 DNA MER1_type 1 193 -26 3339 85 8 73 chr3 5790257 5790804 -212246354 - L1M1 LINE L1 -3503 4062 3549 3086 57 0 86 chr3 5790804 5791282 -212245876 + L1PA7 LINE L1 5718 6154 0 3339 85 8 73 chr3 5791282 5791297 -212245861 - L1M1 LINE L1 -4016 3549 3535 197 318 0 0 chr3 5791883 5791946 -212245212 + MIR SINE MIR 184 246 -16 * 1869 299 120 15 chr3 5791945 5792948 -212244210 + L2 LINE L2 2185 3309 -4 2201 96 3 0 chr3 5793447 5793762 -212243396 - AluSq SINE Alu 0 313 1 21 36 0 0 chr3 5794189 5794217 -212242941 + AT_rich Low_complexity Low_complexity 1 28 0 1743 124 70 4 chr3 5794225 5794498 -212242660 + AluSx SINE Alu 1 291 -21 243 0 0 0 chr3 5795469 5795496 -212241662 + (TG)n Simple_repeat Simple_repeat 2 28 0 1801 118 92 0 chr3 5795743 5796015 -212241143 + AluSg SINE Alu 2 298 -12 403 276 118 0 chr3 5796273 5796400 -212240758 + MLT1E3 LTR MaLR 8 149 -505 951 263 38 8 chr3 5796428 5796664 -212240494 + MLT1E3 LTR MaLR 171 413 -211 2349 104 0 0 chr3 5796717 5797025 -212240133 + AluSx SINE Alu 3 310 -2 23 0 0 0 chr3 5797244 5797267 -212239891 + AT_rich Low_complexity Low_complexity 1 23 0 641 293 5 40 chr3 5797842 5798064 -212239094 + MIR SINE MIR 9 222 -40 184 182 36 73 chr3 5798428 5798483 -212238675 + L3b LINE CR1 1416 1468 -115 369 336 69 18 chr3 5798510 5798582 -212238576 - MIR SINE MIR -25 237 170 180 0 0 0 chr3 5798582 5798602 -212238556 + (CAAA)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 5798602 5798746 -212238412 - MIR SINE MIR -92 170 10 325 302 75 0 chr3 5799632 5799738 -212237420 - L3 LINE CR1 -1 1576 1463 255 200 0 0 chr3 5799740 5799785 -212237373 + MIR SINE MIR 97 141 -121 2134 139 0 3 chr3 5799830 5800139 -212237019 + AluSx SINE Alu 3 310 -2 310 252 126 17 chr3 5800309 5800428 -212236730 + MLT1J LTR MaLR 9 140 -371 300 310 41 16 chr3 5800548 5800750 -212236408 + MLT1J LTR MaLR 241 510 -1 190 371 14 0 chr3 5801472 5801542 -212235616 - L2 LINE L2 -942 2372 2302 1897 143 4 0 chr3 5801579 5801852 -212235306 + MER1A DNA MER1_type 62 335 -194 181 323 15 0 chr3 5801857 5801922 -212235236 - L2 LINE L2 -1078 2236 2171 190 297 247 18 chr3 5802015 5802396 -212234762 - L2 LINE L2 -1319 1995 1528 196 333 0 13 chr3 5802576 5802651 -212234507 + MIR SINE MIR 168 241 -21 23 33 0 0 chr3 5803296 5803326 -212233832 + AT_rich Low_complexity Low_complexity 1 30 0 229 239 149 30 chr3 5805087 5805154 -212232004 - MIR SINE MIR -76 186 112 2431 135 3 3 chr3 5805221 5805584 -212231574 - THE1B LTR MaLR 0 364 2 1374 167 116 25 chr3 5806307 5806583 -212230575 + AluSx SINE Alu 6 306 -6 194 286 0 0 chr3 5806606 5806655 -212230503 - MIR SINE MIR -212 50 2 554 305 58 36 chr3 5808176 5808399 -212228759 + MIR SINE MIR 8 235 -27 1016 166 0 28 chr3 5808470 5808651 -212228507 - FRAM SINE Alu -1 175 1 2524 64 0 0 chr3 5808860 5809158 -212228000 - AluY SINE Alu -13 298 1 25 0 0 0 chr3 5809758 5809783 -212227375 + AT_rich Low_complexity Low_complexity 1 25 0 289 301 0 32 chr3 5810040 5810133 -212227025 - MIR SINE MIR -95 167 78 676 132 294 0 chr3 5810396 5810532 -212226626 + AluSc SINE Alu 127 302 -7 324 283 75 12 chr3 5811483 5811656 -212225502 - MER113 DNA MER1_type? -304 217 34 3518 142 39 29 chr3 5812219 5812907 -212224251 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 5812907 5812929 -212224229 + AT_rich Low_complexity Low_complexity 1 22 0 235 182 55 0 chr3 5813252 5813307 -212223851 + L2 LINE L2 3250 3307 -6 438 335 182 23 chr3 5813365 5813804 -212223354 + L2 LINE L2 2804 3312 -1 384 308 63 6 chr3 5813954 5814113 -212223045 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 5814520 5814607 -212222551 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 291 291 60 46 chr3 5814669 5814820 -212222338 - MIR SINE MIR -105 157 5 508 361 47 29 chr3 5815927 5816268 -212220890 + LTR16C LTR ERVL 137 483 -8 313 286 24 0 chr3 5816299 5816383 -212220775 - L2 LINE L2 -6 3307 3222 2605 103 16 0 chr3 5816524 5816893 -212220265 - THE1C LTR MaLR 0 375 1 206 336 173 0 chr3 5817368 5817472 -212219686 + L3b LINE CR1 1435 1556 -27 202 182 0 0 chr3 5817594 5817627 -212219531 + (TG)n Simple_repeat Simple_repeat 2 34 0 317 279 91 71 chr3 5817677 5817875 -212219283 - MIR SINE MIR -50 212 19 389 263 192 27 chr3 5818130 5818354 -212218804 + MIR SINE MIR 2 262 0 746 216 155 0 chr3 5818390 5818584 -212218574 + MER58A DNA MER1_type 1 224 0 319 345 84 20 chr3 5820259 5820749 -212216409 + L1ME4a LINE L1 5304 5824 -297 712 319 168 17 chr3 5820766 5821242 -212215916 + L2 LINE L2 2102 2649 -665 1491 213 0 11 chr3 5821314 5821600 -212215558 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 5821605 5821635 -212215523 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 865 195 6 18 chr3 5821635 5821804 -212215354 + FRAM SINE Alu 1 162 -14 252 86 0 0 chr3 5822027 5822062 -212215096 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 986 262 136 40 chr3 5822162 5822612 -212214546 + MLT1H LTR MaLR 3 495 -54 299 333 37 9 chr3 5822846 5822954 -212214204 + L2 LINE L2 3142 3252 -20 277 244 100 91 chr3 5823067 5823297 -212213861 + L1ME3A LINE L1 5785 6016 -154 22 56 0 0 chr3 5823374 5823410 -212213748 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 5823428 5823456 -212213702 + AT_rich Low_complexity Low_complexity 1 28 0 1379 176 114 29 chr3 5823620 5823893 -212213265 + MER1B DNA MER1_type 1 296 -43 300 267 83 25 chr3 5824988 5825108 -212212050 + L1ME4a LINE L1 5947 6073 -48 1860 331 77 36 chr3 5825803 5827007 -212210151 - L2 LINE L2 -2050 1264 11 258 237 51 17 chr3 5827223 5827282 -212209876 + MIR SINE MIR 41 101 -161 23 0 0 0 chr3 5827327 5827350 -212209808 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 5827492 5827548 -212209610 + A-rich Low_complexity Low_complexity 6 62 0 210 190 177 76 chr3 5828107 5828186 -212208972 + L2 LINE L2 3227 3313 0 554 229 179 0 chr3 5828382 5828522 -212208636 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 5828527 5828590 -212208568 + MIR SINE MIR 13 76 -186 363 89 0 0 chr3 5828590 5828646 -212208512 - AluSp/q SINE Alu -3 300 245 1932 119 0 0 chr3 5828646 5828906 -212208252 - AluSq SINE Alu -33 280 21 420 262 40 24 chr3 5828906 5829032 -212208126 + MIR SINE MIR 61 188 -74 186 43 0 0 chr3 5830278 5830301 -212206857 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 283 296 70 12 chr3 5830345 5830517 -212206641 + L1ME3A LINE L1 5039 5220 -926 1586 261 89 46 chr3 5830564 5831395 -212205763 + L1ME3A LINE L1 5288 6154 -16 1438 111 65 0 chr3 5831430 5831646 -212205512 - MER30 DNA MER1_type 0 230 1 3162 95 32 2 chr3 5831772 5832129 -212205029 - L1PB1 LINE L1 0 6151 5775 940 79 14 0 chr3 5832129 5832268 -212204890 + (TA)n Simple_repeat Simple_repeat 1 141 0 3162 95 32 2 chr3 5832268 5832371 -212204787 - L1PB1 LINE L1 -376 5775 5677 1972 111 57 104 chr3 5832371 5832841 -212204317 + LTR7 LTR ERV1 1 448 -2 481 99 0 0 chr3 5832843 5832914 -212204244 + HERVH LTR ERV1 1 71 -7642 * 8649 119 34 23 chr3 5832894 5834442 -212202716 + HERVH LTR ERV1 460 2172 -5541 629 41 41 0 chr3 5884607 5884704 -212152454 + (TA)n Simple_repeat Simple_repeat 2 102 0 646 136 10 0 chr3 5884704 5884807 -212152351 - L1P5 LINE L1 -371 5780 5677 2009 110 55 104 chr3 5884807 5885278 -212151880 + LTR7 LTR ERV1 1 448 -2 492 99 0 0 chr3 5885280 5885351 -212151807 + HERVH LTR ERV1 1 71 -7642 * 13676 127 22 22 chr3 5885340 5887779 -212149379 + HERVH LTR ERV1 431 2995 -4718 964 127 7 0 chr3 5887758 5887908 -212149250 + HERVH LTR ERV1 3140 3290 -4423 * 1027 136 6 12 chr3 5887898 5888060 -212149098 + HERVH LTR ERV1 3492 3652 -4061 * 4585 59 5 10 chr3 5888052 5888663 -212148495 + HERVH LTR ERV1 7106 7713 0 1704 110 54 156 chr3 5888663 5889162 -212147996 + LTR7 LTR ERV1 1 448 -2 5570 187 3 5 chr3 5889187 5890803 -212146355 - L1P5 LINE L1 -470 5681 4069 1139 231 8 0 chr3 5890791 5891059 -212146099 - L1 LINE L1 -2686 4176 3907 * 12330 130 86 15 chr3 5891057 5892802 -212144356 - L1PBa LINE L1 -3257 3605 1590 2357 87 0 3 chr3 5892802 5893100 -212144058 - AluY SINE Alu -12 299 3 12330 130 86 15 chr3 5893100 5894128 -212143030 - L1PBa LINE L1 -5272 1590 636 1037 159 20 0 chr3 5894130 5894325 -212142833 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 5894428 5894465 -212142693 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 5895682 5895704 -212141454 + AT_rich Low_complexity Low_complexity 1 22 0 276 340 60 0 chr3 5895729 5895829 -212141329 + MIR SINE MIR 57 162 -100 2483 69 0 3 chr3 5896142 5896447 -212140711 - AluSg SINE Alu -6 304 1 768 256 67 0 chr3 5897205 5897400 -212139758 + MIR SINE MIR 28 235 -27 224 295 152 0 chr3 5898162 5898267 -212138891 - MIR3 SINE MIR -25 183 63 889 197 57 0 chr3 5898705 5898898 -212138260 - LTR16A1 LTR ERVL 0 457 254 403 344 42 47 chr3 5899125 5899317 -212137841 + MIR SINE MIR 20 210 -52 213 363 24 24 chr3 5899556 5899724 -212137434 - MIR SINE MIR -92 170 3 263 203 14 0 chr3 5900822 5900891 -212136267 + (TATG)n Simple_repeat Simple_repeat 3 72 0 1209 243 42 48 chr3 5903060 5903542 -212133616 - MER39 LTR ERV1 -20 687 1 831 167 0 0 chr3 5903722 5903854 -212133304 + AluSq/x SINE Alu 1 132 -181 2153 122 7 7 chr3 5904853 5905157 -212132001 + AluSx SINE Alu 1 304 -8 213 94 0 0 chr3 5905199 5905231 -212131927 + (TG)n Simple_repeat Simple_repeat 1 32 0 2274 151 0 34 chr3 5905329 5905766 -212131392 - L1MA6 LINE L1 -1 6299 5878 237 209 233 12 chr3 5905767 5905853 -212131305 + MER5A DNA MER1_type 77 181 -8 209 393 14 48 chr3 5905872 5906017 -212131141 + MIR SINE MIR 50 189 -73 353 250 46 46 chr3 5906551 5906659 -212130499 - MIR3 SINE MIR -47 161 54 21 0 0 0 chr3 5906809 5906830 -212130328 + AT_rich Low_complexity Low_complexity 1 21 0 1305 99 42 0 chr3 5907005 5907197 -212129961 + L1PA13 LINE L1 5963 6162 -1 247 111 19 19 chr3 5908625 5908679 -212128479 + (TTTTC)n Simple_repeat Simple_repeat 4 57 0 210 67 67 0 chr3 5908707 5908752 -212128406 + CT-rich Low_complexity Low_complexity 1 48 0 603 236 15 64 chr3 5908806 5909009 -212128149 + L1ME3 LINE L1 5940 6132 -30 601 233 114 52 chr3 5909312 5909539 -212127619 - L1MC4 LINE L1 -1 7873 7662 1592 177 69 0 chr3 5909539 5909827 -212127331 - AluJo SINE Alu -4 308 1 601 233 114 52 chr3 5909827 5909869 -212127289 - L1MC4 LINE L1 -212 7662 7624 1454 198 50 3 chr3 5909869 5910167 -212126991 - AluJb SINE Alu 0 312 1 601 233 114 52 chr3 5910167 5910301 -212126857 - L1MC4 LINE L1 -250 7624 7426 480 258 42 42 chr3 5910572 5910762 -212126396 - L1MC4a LINE L1 -439 7369 7180 525 277 63 29 chr3 5910886 5911021 -212126137 - L1MC4 LINE L1 -1081 6961 6813 203 0 0 36 chr3 5911021 5911049 -212126109 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 5911049 5911151 -212126007 - L1MC4 LINE L1 -1229 6813 6716 322 261 12 0 chr3 5911213 5911307 -212125851 - L1MC4 LINE L1 -1458 6545 6443 421 251 127 59 chr3 5912012 5912490 -212124668 + MER34B LTR ERV1 6 565 0 21 36 0 0 chr3 5912829 5912857 -212124301 + AT_rich Low_complexity Low_complexity 1 28 0 200 83 0 28 chr3 5912907 5912943 -212124215 + (CAT)n Simple_repeat Simple_repeat 2 36 0 276 367 39 8 chr3 5912943 5913071 -212124087 - MIR3 SINE MIR -70 138 7 291 353 0 17 chr3 5913180 5913296 -212123862 + MIR SINE MIR 33 146 -62 26 30 0 0 chr3 5914073 5914106 -212123052 + AT_rich Low_complexity Low_complexity 1 33 0 1153 254 93 95 chr3 5914558 5914842 -212122316 + HAL1b LINE L1 83 366 -982 1396 196 28 35 chr3 5914842 5915127 -212122031 + AluJo SINE Alu 1 283 -19 1153 254 93 95 chr3 5915127 5915292 -212121866 + HAL1b LINE L1 366 530 -818 2475 81 0 3 chr3 5915292 5915600 -212121558 + AluSq SINE Alu 1 307 -6 1153 254 93 95 chr3 5915600 5916418 -212120740 + HAL1b LINE L1 530 1348 0 313 301 49 42 chr3 5917531 5917674 -212119484 - L1MC4 LINE L1 -1340 6702 6559 568 151 0 0 chr3 5917709 5917795 -212119363 + AluJ/FLAM SINE Alu 1 86 -226 1262 249 34 25 chr3 5919014 5919339 -212117819 + MER45C DNA AcHobo 626 953 0 318 266 53 21 chr3 5919339 5919433 -212117725 - MIR SINE MIR -138 124 28 280 100 0 50 chr3 5919655 5919715 -212117443 + (TTCCC)n Simple_repeat Simple_repeat 4 60 0 713 333 17 8 chr3 5921228 5921468 -212115690 - MIR SINE MIR -18 244 3 220 321 44 57 chr3 5921556 5921715 -212115443 - L2 LINE L2 -182 3090 2934 22 0 0 0 chr3 5922253 5922275 -212114883 + AT_rich Low_complexity Low_complexity 1 22 0 2330 291 105 32 chr3 5922275 5923916 -212113242 - L2 LINE L2 0 3313 1266 346 281 31 62 chr3 5923996 5924188 -212112970 + LTR37A LTR ERV1 55 240 -186 284 135 0 0 chr3 5924188 5924240 -212112918 - L1MB8 LINE L1 0 6178 6127 867 199 25 0 chr3 5924243 5924439 -212112719 + LTR37A LTR ERV1 218 418 -8 1723 217 52 46 chr3 5924703 5925205 -212111953 - MLT1D LTR MaLR 0 505 1 1890 150 47 26 chr3 5925949 5926290 -212110868 - MER7A DNA MER2_type 0 346 1 2292 62 0 10 chr3 5927465 5927814 -212109344 - AluY SINE Alu 0 311 1 340 272 99 74 chr3 5928188 5928471 -212108687 - L1ME4a LINE L1 -221 5900 5611 1679 168 30 16 chr3 5928800 5928926 -212108232 + AluJb SINE Alu 1 124 -188 423 0 0 0 chr3 5928926 5928973 -212108185 + (CA)n Simple_repeat Simple_repeat 2 48 0 1679 168 30 16 chr3 5928973 5929150 -212108008 + AluJb SINE Alu 124 308 -4 1551 174 87 0 chr3 5929739 5930004 -212107154 + AluSx SINE Alu 1 288 -24 1319 239 47 60 chr3 5930527 5930593 -212106565 - MLT1C LTR MaLR 0 467 402 1862 174 0 3 chr3 5930593 5930897 -212106261 + AluJb SINE Alu 1 303 -9 1319 239 47 60 chr3 5930897 5931298 -212105860 - MLT1C LTR MaLR -65 402 6 2007 149 10 0 chr3 5931323 5931632 -212105526 - AluSq SINE Alu -1 312 1 249 244 58 35 chr3 5931748 5931834 -212105324 + MER103 DNA DNA 69 156 -10 389 232 125 9 chr3 5932278 5932390 -212104768 - MIR SINE MIR -64 198 74 285 326 0 21 chr3 5933212 5933307 -212103851 + L2 LINE L2 3219 3311 -2 271 231 66 55 chr3 5933512 5933603 -212103555 - L2 LINE L2 -1 3312 3221 23 0 0 0 chr3 5934150 5934173 -212102985 + AT_rich Low_complexity Low_complexity 1 23 0 2352 224 20 27 chr3 5934663 5935225 -212101933 - MER74A LTR ERVL 0 558 1 501 147 151 129 chr3 5935267 5935492 -212101666 + MER106A DNA MER1_type 1 230 -6 237 208 57 0 chr3 5936028 5936081 -212101077 + U6 snRNA snRNA 24 79 -28 408 254 16 8 chr3 5936136 5936262 -212100896 + L1ME2 LINE L1 6038 6164 0 512 310 36 39 chr3 5936507 5936748 -212100410 - MIR SINE MIR 0 262 23 213 341 32 32 chr3 5937657 5937780 -212099378 - L2 LINE L2 -217 3055 2933 1900 250 120 56 chr3 5938173 5938921 -212098237 - MER21B LTR ERV1 -48 815 20 320 235 20 71 chr3 5938922 5939020 -212098138 - MER21B LTR ERV1 -759 104 12 273 373 55 39 chr3 5939673 5939705 -212097453 + MIR3 SINE MIR 1 31 -177 1464 163 22 117 chr3 5939705 5940117 -212097041 + MLT1A2 LTR MaLR 2 374 0 273 373 55 39 chr3 5940117 5940236 -212096922 + MIR3 SINE MIR 31 155 -53 382 237 21 0 chr3 5940284 5940377 -212096781 - MER117 DNA MER1_type -35 162 68 284 0 28 0 chr3 5940994 5941030 -212096128 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 394 267 298 0 chr3 5942286 5942417 -212094741 + MER45A DNA AcHobo 1 170 -8 530 253 222 0 chr3 5944204 5944398 -212092760 - MIR SINE MIR -21 241 5 196 231 0 19 chr3 5944426 5944478 -212092680 - MIR SINE MIR -32 230 180 273 354 0 0 chr3 5944593 5944675 -212092483 + Charlie1 DNA MER1_type 1 82 -2679 27 29 0 0 chr3 5945140 5945174 -212091984 + AT_rich Low_complexity Low_complexity 1 34 0 1925 262 59 23 chr3 5945806 5946378 -212090780 + MLT1E LTR MaLR 1 593 0 26 30 0 0 chr3 5946676 5946709 -212090449 + AT_rich Low_complexity Low_complexity 1 33 0 211 374 84 7 chr3 5949195 5949350 -212087808 - MIR SINE MIR -50 212 46 228 213 0 0 chr3 5949832 5949893 -212087265 + CT-rich Low_complexity Low_complexity 2 62 0 388 266 132 60 chr3 5949942 5950306 -212086852 + L1MCc LINE L1 23 412 -6011 1630 264 89 29 chr3 5950556 5950738 -212086420 + L1MCc LINE L1 828 998 -5632 2120 184 26 26 chr3 5950738 5951162 -212085996 + MSTB LTR MaLR 1 424 -2 1630 264 89 29 chr3 5951162 5951825 -212085333 + L1MCc LINE L1 998 1736 -4894 2350 106 0 0 chr3 5951872 5952174 -212084984 + AluSx SINE Alu 1 302 -10 789 273 28 22 chr3 5952228 5952660 -212084498 + L1MCc LINE L1 2138 2478 -4463 667 276 98 33 chr3 5952651 5953251 -212083907 - L1MC4 LINE L1 -127 7681 7186 * 1685 118 33 0 chr3 5953654 5953899 -212083259 - AluSp SINE Alu -22 291 39 479 325 79 95 chr3 5953920 5954655 -212082503 + L2 LINE L2 2218 2940 -374 1580 176 48 0 chr3 5954828 5955118 -212082040 - AluJb SINE Alu -8 304 1 249 316 89 0 chr3 5955220 5955299 -212081859 + L2 LINE L2 3150 3235 -37 229 257 86 29 chr3 5955301 5955371 -212081787 - L2 LINE L2 -8 3305 3232 419 321 25 6 chr3 5956107 5956266 -212080892 - MIR3 SINE MIR -2 206 45 619 256 45 25 chr3 5956522 5956721 -212080437 + MIR SINE MIR 46 248 -14 351 0 0 0 chr3 5957413 5957452 -212079706 + (CA)n Simple_repeat Simple_repeat 2 40 0 249 274 27 0 chr3 5957623 5957696 -212079462 + MIR SINE MIR 182 256 -6 1728 176 3 0 chr3 5958166 5958455 -212078703 + AluJo SINE Alu 1 290 -22 634 209 130 6 chr3 5958465 5958642 -212078516 + MER20 DNA MER1_type 1 199 -20 434 341 74 9 chr3 5959093 5959310 -212077848 - MIR SINE MIR -14 248 18 2278 113 0 7 chr3 5959809 5960119 -212077039 - AluSx SINE Alu -3 309 2 206 310 43 70 chr3 5960867 5961054 -212076104 + L2 LINE L2 2726 2907 -407 300 254 24 79 chr3 5961338 5961464 -212075694 + MIR SINE MIR 45 163 -99 560 284 126 48 chr3 5961574 5961845 -212075313 + LTR16C LTR ERVL 200 491 0 1976 134 16 3 chr3 5961865 5962172 -212074986 + AluSx SINE Alu 1 311 -1 521 237 44 7 chr3 5962298 5962433 -212074725 + MIR SINE MIR 12 151 -111 217 221 118 0 chr3 5962827 5962895 -212074263 - MIR SINE MIR -140 122 47 207 0 0 0 chr3 5962899 5962922 -212074236 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2975 83 0 2 chr3 5963008 5963405 -212073753 - L1PA8 LINE L1 0 6172 5777 291 290 43 73 chr3 5963706 5963845 -212073313 + MIR SINE MIR 45 180 -28 414 321 81 43 chr3 5964255 5964464 -212072694 + MIR SINE MIR 46 262 0 735 288 113 14 chr3 5965574 5966092 -212071066 - MLT2E LTR ERVL -2 626 25 1597 169 4 22 chr3 5966357 5966635 -212070523 + AluJo SINE Alu 2 274 -38 300 27 0 0 chr3 5968226 5968266 -212068892 + (TG)n Simple_repeat Simple_repeat 1 77 0 300 27 0 0 chr3 5968266 5968303 -212068855 + (TG)n Simple_repeat Simple_repeat 2 38 0 658 201 201 73 chr3 5968520 5968795 -212068363 + MER63D DNA MER1_type 47 376 -685 212 0 0 35 chr3 5968795 5968824 -212068334 + (TA)n Simple_repeat Simple_repeat 1 28 0 658 201 201 73 chr3 5968824 5968891 -212068267 + MER63D DNA MER1_type 376 433 -628 1647 198 68 3 chr3 5968910 5969278 -212067880 + MER63D DNA MER1_type 666 1057 -4 22 35 0 0 chr3 5969382 5969411 -212067747 + AT_rich Low_complexity Low_complexity 1 29 0 194 258 91 45 chr3 5969432 5969498 -212067660 - MER5B DNA MER1_type -2 176 108 1073 242 81 36 chr3 5969503 5969704 -212067454 + L1ME3A LINE L1 5734 5924 -246 216 0 0 0 chr3 5969704 5969728 -212067430 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 5969728 5969944 -212067214 + L1ME3A LINE L1 5924 6170 0 2150 115 0 0 chr3 5969954 5970233 -212066925 + AluSg SINE Alu 1 279 -31 444 237 21 0 chr3 5970277 5970374 -212066784 + MER5B DNA MER1_type 77 175 -3 24 77 0 0 chr3 5970417 5970469 -212066689 + AT_rich Low_complexity Low_complexity 1 52 0 1234 160 20 116 chr3 5970508 5970802 -212066356 + Tigger7 DNA MER2_type 2 267 -2220 412 264 0 0 chr3 5970800 5970887 -212066271 + Tigger7 DNA MER2_type 2389 2475 -12 * 296 250 181 0 chr3 5971020 5971092 -212066066 + FLAM_A SINE Alu 33 117 -16 198 167 0 0 chr3 5971102 5971138 -212066020 + (TG)n Simple_repeat Simple_repeat 1 36 0 322 218 33 0 chr3 5971138 5971229 -212065929 + L1MCa LINE L1 1996 6983 -1339 281 188 0 0 chr3 5971259 5971323 -212065835 - L1MC4 LINE L1 -1339 6703 6640 813 217 0 30 chr3 5971329 5971495 -212065663 + FRAM SINE Alu 1 154 -22 6715 105 13 35 chr3 5971522 5972556 -212064602 + L1MA2 LINE L1 5137 6192 -112 1946 127 4 0 chr3 5972556 5972823 -212064335 + AluSx SINE Alu 1 268 -44 392 36 0 18 chr3 5972825 5972880 -212064278 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 6715 105 13 35 chr3 5972880 5973036 -212064122 + L1MA2 LINE L1 6193 6304 0 461 176 22 22 chr3 5973040 5973057 -212064101 + GA-rich Low_complexity Low_complexity 2 18 -119 1682 170 26 13 chr3 5973057 5973363 -212063795 + AluJo SINE Alu 1 310 -2 461 176 22 22 chr3 5973363 5973481 -212063677 + GA-rich Low_complexity Low_complexity 17 137 0 23 0 0 0 chr3 5974570 5974593 -212062565 + AT_rich Low_complexity Low_complexity 1 23 0 825 330 41 39 chr3 5974741 5975280 -212061878 - L2 LINE L2 -2 3311 2772 2350 96 3 0 chr3 5975330 5975642 -212061516 + AluSp SINE Alu 1 313 0 23 54 0 0 chr3 5977327 5977364 -212059794 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 5977607 5977631 -212059527 + AT_rich Low_complexity Low_complexity 1 24 0 1944 134 3 3 chr3 5977636 5977962 -212059196 + AluSx SINE Alu 3 328 0 261 277 69 54 chr3 5978361 5978491 -212058667 + L2 LINE L2 3140 3271 -1 264 242 200 11 chr3 5978501 5978596 -212058562 - L2 LINE L2 -1 3312 3200 271 234 404 0 chr3 5978797 5978891 -212058267 - L2 LINE L2 0 3272 3141 1662 220 77 46 chr3 5978897 5979379 -212057779 - MLT1D LTR MaLR -6 499 3 1006 289 86 42 chr3 5980903 5981429 -212055729 + MLT1H LTR MaLR 1 549 0 21 36 0 0 chr3 5981479 5981507 -212055651 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 5981615 5981638 -212055520 + AT_rich Low_complexity Low_complexity 1 23 0 29 84 0 0 chr3 5981686 5981757 -212055401 + AT_rich Low_complexity Low_complexity 1 71 0 25 31 0 0 chr3 5982219 5982251 -212054907 + AT_rich Low_complexity Low_complexity 1 32 0 282 287 30 20 chr3 5982745 5982846 -212054312 + MLT1H LTR MaLR 1 102 -447 25 0 0 0 chr3 5982972 5982997 -212054161 + AT_rich Low_complexity Low_complexity 1 25 0 236 222 0 16 chr3 5983279 5983342 -212053816 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 334 377 117 20 chr3 5983677 5984078 -212053080 - L2 LINE L2 -339 2975 2536 199 346 71 50 chr3 5984071 5984253 -212052905 + L2 LINE L2 2628 2813 -501 * 283 298 58 8 chr3 5984423 5984544 -212052614 - MER94 DNA DNA 0 134 8 292 380 29 37 chr3 5984591 5984836 -212052322 + MLT1K LTR MaLR 40 282 -306 1246 314 38 7 chr3 5984899 5985320 -212051838 + MER74C LTR ERVL 10 443 -17 2023 141 3 6 chr3 5985465 5985777 -212051381 - AluSq SINE Alu 0 313 3 496 325 10 25 chr3 5986026 5986229 -212050929 + MIR3 SINE MIR 9 208 0 303 249 44 88 chr3 5986835 5987040 -212050118 + MER46C DNA MER2_type 1 196 -142 266 245 0 43 chr3 5987075 5987169 -212049989 - L1MC4 LINE L1 -1339 6703 6614 1055 220 5 5 chr3 5987264 5987464 -212049694 + MER58A DNA MER1_type 1 200 -24 337 321 9 0 chr3 5989497 5989609 -212047549 - MIR3 SINE MIR -1 207 95 427 300 15 0 chr3 5989901 5990031 -212047127 - MER110 LTR ERV1 0 491 360 2573 149 9 41 chr3 5990045 5990488 -212046670 + MER57B LTR ERV1 1 429 -5 952 251 127 0 chr3 5990495 5990762 -212046396 - MER110 LTR ERV1 -145 346 46 505 267 72 59 chr3 5990816 5991037 -212046121 - MER58A DNA MER1_type 0 224 1 226 210 32 0 chr3 5991195 5991257 -212045901 + (TA)n Simple_repeat Simple_repeat 1 64 0 1762 281 8 58 chr3 5991588 5992223 -212044935 + L3 LINE CR1 795 1397 -180 495 297 24 38 chr3 5992223 5992432 -212044726 + MIR SINE MIR 4 209 -53 267 360 93 0 chr3 5992448 5992587 -212044571 + L3 LINE CR1 1425 1576 -1 391 259 32 138 chr3 5992662 5992909 -212044249 + MER102a DNA MER1_type 92 312 -18 567 306 27 32 chr3 5993093 5993312 -212043846 - MIR SINE MIR -35 227 10 376 277 44 25 chr3 5993504 5993663 -212043495 + MER103 DNA DNA 5 166 0 199 336 64 0 chr3 5993764 5993874 -212043284 + MIR SINE MIR 53 169 -93 2078 105 3 3 chr3 5994077 5994363 -212042795 - AluSx SINE Alu -26 286 1 238 164 16 16 chr3 5994435 5994496 -212042662 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 304 0 87 0 chr3 5995357 5995403 -212041755 + A-rich Low_complexity Low_complexity 2 51 0 182 379 11 0 chr3 5995905 5995992 -212041166 - MIR SINE MIR -155 107 20 732 316 25 8 chr3 5996483 5996720 -212040438 + MIR SINE MIR 22 262 0 614 188 0 0 chr3 5997380 5997515 -212039643 - AluJo SINE Alu 0 318 184 614 217 0 0 chr3 5997515 5997630 -212039528 - AluJo SINE Alu -187 115 1 1302 258 58 8 chr3 5999337 5999713 -212037445 - LTR16C LTR ERVL 0 491 97 326 297 84 19 chr3 6000468 6000623 -212036535 - MIR SINE MIR -74 188 24 236 333 24 0 chr3 6000685 6000769 -212036389 + MER81 DNA DNA 7 92 -22 183 304 10 69 chr3 6001528 6001630 -212035528 + MIR3 SINE MIR 74 169 -39 261 220 57 14 chr3 6003161 6003302 -212033856 + (TA)n Simple_repeat Simple_repeat 1 147 0 375 267 74 93 chr3 6003582 6003852 -212033306 - L2 LINE L2 -6 3307 3043 22 35 0 0 chr3 6003951 6003980 -212033178 + AT_rich Low_complexity Low_complexity 1 29 0 242 298 0 0 chr3 6005271 6005328 -212031830 - L2 LINE L2 -27 3286 3230 1070 146 5 21 chr3 6005578 6005770 -212031388 - L1PB2 LINE L1 -7 6144 5956 766 236 34 39 chr3 6005984 6006192 -212030966 - MER20 DNA MER1_type 0 219 13 3141 228 28 66 chr3 6006193 6007250 -212029908 + L1ME2 LINE L1 3763 4779 -1367 2589 216 31 19 chr3 6007217 6007832 -212029326 + L1MB5 LINE L1 5545 6166 -8 * 378 159 35 7 chr3 6007867 6008012 -212029146 + CT-rich Low_complexity Low_complexity 1 149 0 21 0 0 0 chr3 6008083 6008104 -212029054 + AT_rich Low_complexity Low_complexity 1 21 0 757 301 33 5 chr3 6008161 6008374 -212028784 - MIR SINE MIR -42 220 2 2652 245 126 13 chr3 6009376 6010544 -212026614 + L1ME2 LINE L1 4854 6155 -9 279 0 0 0 chr3 6010916 6010947 -212026211 + (CA)n Simple_repeat Simple_repeat 1 31 0 192 111 0 0 chr3 6011376 6011412 -212025746 + (T)n Simple_repeat Simple_repeat 1 36 0 601 331 79 64 chr3 6012215 6012608 -212024550 - LTR16C LTR ERVL -4 487 89 303 244 74 67 chr3 6012711 6012846 -212024312 - MIR SINE MIR -116 146 11 427 265 128 95 chr3 6013054 6013256 -212023902 - HAL1 LINE L1 -3 2504 2310 2075 128 0 19 chr3 6013256 6013568 -212023590 + AluSx SINE Alu 1 306 -6 427 265 128 95 chr3 6013568 6014229 -212022929 - HAL1 LINE L1 -197 2310 1612 1995 123 0 14 chr3 6014487 6014799 -212022359 - AluSg SINE Alu 0 308 1 313 321 142 37 chr3 6015247 6015409 -212021749 - HAL1 LINE L1 -2101 406 228 197 319 132 42 chr3 6015671 6015815 -212021343 + L2 LINE L2 3116 3272 0 251 325 36 0 chr3 6017198 6017281 -212019877 + L2 LINE L2 3184 3269 -3 2256 204 60 30 chr3 6017503 6018041 -212019117 + MLT2B3 LTR ERVL 1 554 0 1718 237 92 13 chr3 6018181 6018716 -212018442 - MER119 DNA MER1_type 0 583 7 572 328 58 17 chr3 6018725 6018966 -212018192 + MIR SINE MIR 12 262 0 672 252 26 52 chr3 6019139 6019369 -212017789 - MIR SINE MIR -26 236 13 21 57 0 0 chr3 6020353 6020388 -212016770 + AT_rich Low_complexity Low_complexity 1 35 0 1763 205 3 6 chr3 6021697 6022058 -212015100 + MER46B DNA MER2_type 1 235 -1 21 36 0 0 chr3 6022160 6022188 -212014970 + AT_rich Low_complexity Low_complexity 1 28 0 926 208 63 0 chr3 6023067 6023274 -212013884 + MLT2B1 LTR ERVL 1 220 -300 230 162 0 0 chr3 6023311 6023348 -212013810 + MLT2C2 LTR ERVL 426 462 -2 222 37 0 0 chr3 6023719 6023746 -212013412 + (TG)n Simple_repeat Simple_repeat 2 28 0 208 338 27 0 chr3 6024530 6024604 -212012554 - L2 LINE L2 -3 3269 3194 723 298 88 51 chr3 6024990 6025634 -212011524 + L1ME4a LINE L1 5315 5982 -139 226 209 15 15 chr3 6025662 6025729 -212011429 + L1ME4a LINE L1 6052 6118 -3 404 371 9 0 chr3 6026225 6026341 -212010817 + L2 LINE L2 3189 3305 -8 22 56 0 0 chr3 6026347 6026383 -212010775 + AT_rich Low_complexity Low_complexity 1 36 0 1305 62 6 0 chr3 6027221 6027397 -212009761 - AluY SINE Alu -3 308 132 2343 59 3 0 chr3 6027520 6027823 -212009335 - AluY SINE Alu -7 304 1 2257 48 7 0 chr3 6027907 6028199 -212008959 - AluY SINE Alu -16 295 2 234 350 46 53 chr3 6029479 6029762 -212007396 + L1MEd LINE L1 496 776 -5343 25 75 0 0 chr3 6029886 6029939 -212007219 + AT_rich Low_complexity Low_complexity 1 53 0 254 228 60 75 chr3 6030023 6030247 -212006911 + L1MEd LINE L1 1125 1396 -4894 28 0 0 0 chr3 6031166 6031194 -212005964 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 6031194 6031480 -212005678 - AluY SINE Alu -24 287 2 28 0 0 0 chr3 6031572 6031600 -212005558 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 6032154 6032182 -212004976 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 6032182 6032468 -212004690 - AluY SINE Alu -24 287 2 28 0 0 0 chr3 6032560 6032588 -212004570 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 6032820 6032849 -212004309 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 306 0 0 0 chr3 6032848 6032882 -212004276 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr3 6033373 6033396 -212003762 + AT_rich Low_complexity Low_complexity 1 23 0 1269 27 0 0 chr3 6033396 6033545 -212003613 - L1PA3 LINE L1 -5 6150 6002 635 331 20 36 chr3 6033852 6034100 -212003058 - MIR SINE MIR -3 259 16 183 129 0 0 chr3 6034235 6034266 -212002892 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 826 285 92 64 chr3 6035134 6035353 -212001805 + HAL1b LINE L1 112 323 -1025 210 91 0 0 chr3 6035353 6035386 -212001772 + (CA)n Simple_repeat Simple_repeat 2 34 0 826 285 92 64 chr3 6035386 6036141 -212001017 + HAL1b LINE L1 323 1114 -234 2127 90 0 4 chr3 6036142 6036450 -212000708 - AluSc SINE Alu 0 307 1 29 28 0 0 chr3 6036517 6036553 -212000605 + AT_rich Low_complexity Low_complexity 1 36 0 185 170 21 43 chr3 6037033 6037080 -212000078 + MER5C DNA MER1_type 279 324 0 24 0 0 0 chr3 6039933 6039957 -211997201 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 6039979 6040007 -211997151 + AT_rich Low_complexity Low_complexity 1 28 0 1956 327 64 1 chr3 6040109 6040856 -211996302 + L2 LINE L2 1331 2124 -1190 995 293 66 7 chr3 6040884 6041307 -211995851 + L1MC4 LINE L1 4440 4887 -1259 1298 239 70 55 chr3 6041338 6041527 -211995631 + L1MC4 LINE L1 4846 5031 -1135 1915 76 29 11 chr3 6041527 6041803 -211995355 + L1PA11 LINE L1 5894 6174 0 1298 239 70 55 chr3 6041803 6042168 -211994990 + L1MC4 LINE L1 5031 5389 -777 1484 201 3 3 chr3 6042168 6042452 -211994706 + AluJb SINE Alu 3 286 -26 203 0 0 36 chr3 6042462 6042490 -211994668 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 1298 239 70 55 chr3 6042490 6043093 -211994065 + L1MC4 LINE L1 5397 6161 -5 568 310 44 31 chr3 6043341 6043570 -211993588 - MIR SINE MIR -2 260 29 267 79 0 0 chr3 6043755 6043793 -211993365 + (CA)n Simple_repeat Simple_repeat 2 39 0 252 0 0 0 chr3 6044273 6044301 -211992857 + (T)n Simple_repeat Simple_repeat 1 28 0 311 238 0 0 chr3 6044443 6044506 -211992652 + MER69 DNA AcHobo 2464 2526 0 327 288 220 11 chr3 6044847 6045038 -211992120 - MIR SINE MIR -19 243 13 680 271 81 44 chr3 6046375 6046670 -211990488 + MLT1H LTR MaLR 1 306 -243 310 277 0 80 chr3 6046704 6046841 -211990317 + MLT1H LTR MaLR 424 549 0 225 284 47 101 chr3 6046866 6047014 -211990144 - LTR16C LTR ERVL 0 491 352 603 145 8 63 chr3 6048428 6048933 -211988225 + (CATATA)n Simple_repeat Simple_repeat 1 477 0 266 125 21 0 chr3 6048935 6048983 -211988175 + (CA)n Simple_repeat Simple_repeat 2 50 0 897 328 77 32 chr3 6048991 6049665 -211987493 - HERVL LTR ERVL -1028 4457 3735 1482 338 58 38 chr3 6049790 6050990 -211986168 - HERVL LTR ERVL -1975 3021 1799 25 0 0 0 chr3 6051605 6051630 -211985528 + AT_rich Low_complexity Low_complexity 1 25 0 574 192 83 0 chr3 6051784 6051904 -211985254 + FLAM_A SINE Alu 4 133 0 347 283 75 12 chr3 6052862 6053035 -211984123 - MER113 DNA MER1_type? -304 217 34 3523 142 39 32 chr3 6053598 6054288 -211982870 + L1MA7 LINE L1 5597 6291 0 22 0 0 0 chr3 6054288 6054310 -211982848 + AT_rich Low_complexity Low_complexity 1 22 0 234 182 55 0 chr3 6054633 6054688 -211982470 + L2 LINE L2 3250 3307 -6 435 335 182 23 chr3 6054746 6055185 -211981973 + L2 LINE L2 2804 3312 -1 411 302 63 6 chr3 6055335 6055494 -211981664 + MLT1F LTR MaLR 1 168 -374 229 218 11 35 chr3 6055901 6055988 -211981170 + (TTTA)n Simple_repeat Simple_repeat 1 85 0 302 291 60 46 chr3 6056050 6056201 -211980957 - MIR SINE MIR -105 157 5 513 361 47 29 chr3 6057308 6057649 -211979509 + LTR16C LTR ERVL 137 483 -8 314 286 24 0 chr3 6057680 6057764 -211979394 - L2 LINE L2 -6 3307 3222 2581 103 16 0 chr3 6057905 6058274 -211978884 - THE1C LTR MaLR 0 375 1 190 352 114 0 chr3 6058765 6058853 -211978305 + L3b LINE CR1 1459 1556 -27 23 33 0 0 chr3 6059040 6059070 -211978088 + AT_rich Low_complexity Low_complexity 1 30 0 376 268 192 27 chr3 6059212 6059436 -211977722 + MIR SINE MIR 2 262 0 756 211 155 0 chr3 6059472 6059666 -211977492 + MER58A DNA MER1_type 1 224 0 374 345 84 20 chr3 6061341 6061831 -211975327 + L1ME LINE L1 5304 5824 -297 716 313 175 18 chr3 6061848 6062305 -211974853 + L2 LINE L2 2102 2630 -684 1461 213 0 11 chr3 6062396 6062682 -211974476 + AluJb SINE Alu 6 288 -24 188 33 0 33 chr3 6062687 6062717 -211974441 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 852 195 6 18 chr3 6062717 6062886 -211974272 + FRAM SINE Alu 1 162 -14 261 83 0 0 chr3 6063109 6063145 -211974013 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 954 267 136 40 chr3 6063243 6063693 -211973465 + MLT1H LTR MaLR 3 495 -54 299 359 31 8 chr3 6063927 6064055 -211973103 + L2 LINE L2 3142 3272 0 292 244 100 91 chr3 6064148 6064378 -211972780 + L1ME3A LINE L1 5785 6016 -154 21 36 0 0 chr3 6064509 6064537 -211972621 + AT_rich Low_complexity Low_complexity 1 28 0 1354 176 114 29 chr3 6064701 6064974 -211972184 + MER1B DNA MER1_type 1 296 -43 2037 331 63 38 chr3 6066884 6068107 -211969051 - L2 LINE L2 -2050 1264 11 241 268 0 18 chr3 6068326 6068382 -211968776 + MIR SINE MIR 47 101 -161 23 0 0 0 chr3 6068427 6068450 -211968708 + AT_rich Low_complexity Low_complexity 1 23 0 199 54 54 36 chr3 6068592 6068648 -211968510 + A-rich Low_complexity Low_complexity 6 62 0 213 190 177 76 chr3 6069205 6069284 -211967874 + L2 LINE L2 3227 3313 0 555 229 179 0 chr3 6069480 6069620 -211967538 + MER5A DNA MER1_type 24 188 -1 185 349 32 16 chr3 6069625 6069688 -211967470 + MIR SINE MIR 13 76 -186 362 89 0 0 chr3 6069688 6069744 -211967414 - AluSp/q SINE Alu -3 300 245 1934 115 0 0 chr3 6069744 6070004 -211967154 - AluSq SINE Alu -33 280 21 427 262 40 24 chr3 6070004 6070130 -211967028 + MIR SINE MIR 61 188 -74 293 336 107 22 chr3 6071133 6071374 -211965784 + L1ME3A LINE L1 4724 4943 -1203 186 43 0 0 chr3 6071374 6071397 -211965761 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 293 336 107 22 chr3 6071397 6071613 -211965545 + L1ME3A LINE L1 4943 5220 -926 1500 265 63 50 chr3 6071660 6072426 -211964732 + L1ME3A LINE L1 5288 6063 -107 427 300 202 5 chr3 6073753 6074120 -211963038 - HAL1 LINE L1 -696 1811 1373 994 205 71 26 chr3 6074531 6074799 -211962359 - MER21B LTR ERV1 -114 749 470 210 143 0 0 chr3 6075373 6075408 -211961750 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 6076238 6076267 -211960891 + AT_rich Low_complexity Low_complexity 1 29 0 290 292 28 0 chr3 6076563 6076635 -211960523 - L2 LINE L2 -3 3269 3196 575 260 201 43 chr3 6076640 6077032 -211960126 - LTR16A1 LTR ERVL -3 454 1 301 281 114 9 chr3 6077639 6077753 -211959405 + L2 LINE L2 3147 3272 0 282 116 0 0 chr3 6077880 6077923 -211959235 + (TA)n Simple_repeat Simple_repeat 2 44 0 2224 74 0 7 chr3 6079639 6079957 -211957201 + AluY SINE Alu 1 316 0 1671 219 115 22 chr3 6080103 6080565 -211956593 - MLT1D LTR MaLR 0 505 1 24 0 0 0 chr3 6080675 6080699 -211956459 + AT_rich Low_complexity Low_complexity 1 24 0 284 267 76 29 chr3 6080974 6081079 -211956079 - MIR SINE MIR -74 188 79 387 0 0 0 chr3 6081139 6081182 -211955976 + (A)n Simple_repeat Simple_repeat 1 43 0 29 28 0 0 chr3 6082159 6082195 -211954963 + AT_rich Low_complexity Low_complexity 1 36 0 377 181 123 48 chr3 6082763 6082924 -211954234 - MER20 DNA MER1_type 0 219 2 245 278 133 0 chr3 6084473 6084563 -211952595 - MIR SINE MIR -51 211 110 6178 95 23 7 chr3 6084683 6086313 -211950845 - L1PA13 LINE L1 -1 6162 4516 299 332 45 10 chr3 6086414 6086616 -211950542 + L1MC4a LINE L1 5677 5885 -1923 1528 211 13 3 chr3 6086623 6086927 -211950231 + 7SLRNA srpRNA srpRNA 1 307 -13 28 61 0 0 chr3 6087119 6087168 -211949990 + AT_rich Low_complexity Low_complexity 1 49 0 285 264 72 64 chr3 6087944 6088069 -211949089 + MLT1K LTR MaLR 282 407 -181 218 105 26 0 chr3 6088201 6088239 -211948919 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 28691 120 76 9 chr3 6088853 6094611 -211942547 + L1PA7 LINE L1 12 6152 -2 21 0 0 0 chr3 6096254 6096275 -211940883 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 6096554 6096589 -211940569 + AT_rich Low_complexity Low_complexity 1 35 0 194 324 6 6 chr3 6098540 6098629 -211938529 + MIR SINE MIR 19 108 -100 219 36 0 0 chr3 6098843 6098871 -211938287 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 1515 163 0 105 chr3 6099037 6099369 -211937789 + AluJb SINE Alu 1 297 -15 339 303 328 5 chr3 6099850 6100045 -211937113 - MIR SINE MIR -3 259 2 278 340 21 0 chr3 6100158 6100252 -211936906 - MIR SINE MIR -68 140 45 239 319 11 32 chr3 6100754 6100848 -211936310 + MLT1K LTR MaLR 482 573 -15 21 36 0 0 chr3 6102304 6102332 -211934826 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 6103397 6103422 -211933736 + AT_rich Low_complexity Low_complexity 1 25 0 2099 270 50 54 chr3 6103524 6104719 -211932439 - HAL1 LINE L1 -148 2359 1169 18728 30 0 0 chr3 6154749 6157022 -211880136 - L1P LINE L1 -840 5306 3034 246 266 31 0 chr3 6158619 6158683 -211878475 - MLT2D LTR ERVL -118 296 231 758 201 85 0 chr3 6162325 6162489 -211874669 - MER5B DNA MER1_type 0 178 1 243 200 50 62 chr3 6162506 6162586 -211874572 - Charlie8 DNA MER1_type 0 2417 2339 359 307 94 40 chr3 6163044 6163246 -211873912 + MIR SINE MIR 49 261 -1 523 233 39 0 chr3 6163648 6163777 -211873381 + MLT1C LTR MaLR 34 167 -300 7086 39 8 3 chr3 6163783 6164832 -211872326 + L1PA4 LINE L1 5139 6155 0 832 241 84 45 chr3 6164832 6165118 -211872040 + MLT1C LTR MaLR 171 467 0 311 183 14 0 chr3 6165642 6165713 -211871445 - L1MDa LINE L1 -4351 2189 2118 2174 203 51 75 chr3 6165817 6166640 -211870518 - L1MDa LINE L1 -4441 2099 1297 2617 255 50 22 chr3 6166655 6167329 -211869829 - L1MDa LINE L1 -5831 709 17 6533 235 32 17 chr3 6167878 6168053 -211869105 - L1PA12 LINE L1 -2789 4795 4624 2754 22 0 0 chr3 6168053 6168364 -211868794 - AluYa5 SINE Alu 0 311 1 6533 235 32 17 chr3 6168364 6171012 -211866146 - L1PA12 LINE L1 -2960 4624 1924 661 303 31 12 chr3 6171024 6171278 -211865880 - L1PA12 LINE L1 -7322 259 1 1634 178 3 28 chr3 6171835 6172121 -211865037 - AluJb SINE Alu -31 281 3 1869 179 42 8 chr3 6172450 6172803 -211864355 - MLT1A1 LTR MaLR 0 365 1 1870 142 64 0 chr3 6173009 6173290 -211863868 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 6173439 6173470 -211863688 + AT_rich Low_complexity Low_complexity 1 31 0 228 167 0 0 chr3 6173503 6173551 -211863607 + LTR66 LTR ERVL 392 439 -171 264 122 0 0 chr3 6173553 6173594 -211863564 + (TA)n Simple_repeat Simple_repeat 1 41 0 237 164 164 0 chr3 6173596 6173657 -211863501 + MIR SINE MIR 70 140 -122 230 204 0 0 chr3 6173684 6173728 -211863430 + Tigger2 DNA MER2_type 26 69 -2649 * 2416 148 60 7 chr3 6173715 6174135 -211863023 + Tigger2 DNA MER2_type 2271 2712 -6 226 310 0 0 chr3 6174146 6174204 -211862954 + MIR SINE MIR 156 213 -49 2399 67 3 3 chr3 6174387 6174685 -211862473 - AluY SINE Alu -13 298 1 186 43 0 0 chr3 6174802 6174825 -211862333 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 183 250 0 0 chr3 6175243 6175311 -211861847 + G-rich Low_complexity Low_complexity 1 68 0 338 260 42 21 chr3 6175493 6175589 -211861569 + MLT1L LTR MaLR 297 394 -221 2430 200 34 20 chr3 6175746 6176301 -211860857 - L1MB3 LINE L1 -6 6177 5615 207 419 26 21 chr3 6176644 6176835 -211860323 + L2 LINE L2 2869 3060 -212 1343 293 124 15 chr3 6177005 6177673 -211859485 + L2 LINE L2 1945 2685 -629 777 118 0 0 chr3 6177719 6177829 -211859329 + MSTB1 LTR MaLR 1 110 -322 942 275 83 73 chr3 6177856 6178381 -211858777 + L2 LINE L2 2777 3311 -2 265 333 61 10 chr3 6178378 6178477 -211858681 + L2 LINE L2 3169 3272 0 * 282 287 33 16 chr3 6179076 6179198 -211857960 + CT-rich Low_complexity Low_complexity 3 126 0 279 343 26 82 chr3 6180285 6180553 -211856605 + L3 LINE CR1 1066 1318 -259 336 317 83 22 chr3 6180553 6180733 -211856425 - L2 LINE L2 -5 3308 3118 303 311 120 70 chr3 6180982 6181423 -211855735 - L2 LINE L2 -517 2797 2335 186 301 126 10 chr3 6181561 6181664 -211855494 + L3 LINE CR1 585 699 -878 192 77 0 0 chr3 6182588 6182614 -211854544 + (TG)n Simple_repeat Simple_repeat 1 26 0 231 36 0 0 chr3 6182640 6182668 -211854490 + (TG)n Simple_repeat Simple_repeat 1 28 0 3157 82 9 24 chr3 6182744 6183195 -211853963 - MLT2A1 LTR ERVL 0 444 1 263 297 0 0 chr3 6183640 6183704 -211853454 - MIR SINE MIR -19 243 180 733 277 0 21 chr3 6184198 6184386 -211852772 - MIR SINE MIR -77 185 2 299 206 0 0 chr3 6184864 6184927 -211852231 - MLT1E2 LTR MaLR -16 610 548 435 239 9 18 chr3 6185073 6185186 -211851972 - MLT1E3 LTR MaLR -459 165 54 228 342 0 26 chr3 6187776 6187852 -211849306 + MIR SINE MIR 20 93 -115 458 296 23 8 chr3 6187952 6188084 -211849074 + MIR SINE MIR 127 260 -2 195 368 0 0 chr3 6188307 6188375 -211848783 + L2 LINE L2 3205 3272 0 418 321 93 19 chr3 6188629 6188791 -211848367 + MIR3 SINE MIR 20 193 -15 323 325 84 19 chr3 6188984 6189138 -211848020 + MIR SINE MIR 22 185 -77 185 339 36 36 chr3 6189328 6189440 -211847718 - L2 LINE L2 -3 3310 3199 28 61 0 0 chr3 6189560 6189609 -211847549 + AT_rich Low_complexity Low_complexity 1 49 0 829 307 107 58 chr3 6189744 6190642 -211846516 - L2 LINE L2 0 3313 2375 672 224 153 10 chr3 6190652 6190848 -211846310 - MER58A DNA MER1_type 0 224 1 1069 324 166 14 chr3 6190852 6191575 -211845583 - L2 LINE L2 -947 2367 1535 285 277 0 32 chr3 6191712 6191806 -211845352 - MER63 DNA MER1_type -86 750 34 632 157 0 17 chr3 6191911 6192083 -211845075 + G-rich Low_complexity Low_complexity 1 169 0 1881 155 0 7 chr3 6192416 6192707 -211844451 - AluSg SINE Alu -19 291 3 26 0 0 0 chr3 6193384 6193410 -211843748 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 6194070 6194093 -211843065 + AT_rich Low_complexity Low_complexity 1 23 0 383 327 107 58 chr3 6194538 6195125 -211842033 - L2 LINE L2 0 3313 2705 245 211 47 39 chr3 6195151 6195279 -211841879 + (CATATA)n Simple_repeat Simple_repeat 3 131 0 204 323 31 0 chr3 6195811 6195876 -211841282 + L2 LINE L2 3247 3313 0 453 280 40 13 chr3 6196158 6196308 -211840850 + L2 LINE L2 3154 3307 -6 1315 207 28 69 chr3 6196604 6196966 -211840192 - MER82 DNA MER2_type -305 348 2 206 257 46 9 chr3 6196967 6197076 -211840082 + (TA)n Simple_repeat Simple_repeat 2 114 0 339 25 0 0 chr3 6197314 6197354 -211839804 + (TA)n Simple_repeat Simple_repeat 1 40 0 962 77 0 8 chr3 6198278 6198408 -211838750 + L1PA10 LINE L1 6040 6168 0 228 35 0 0 chr3 6198493 6198522 -211838636 + (CA)n Simple_repeat Simple_repeat 2 30 0 2185 121 3 0 chr3 6198699 6199006 -211838152 + AluSx SINE Alu 1 308 -4 1817 119 159 68 chr3 6199218 6199588 -211837570 - MER4A LTR ERV1 0 664 261 638 121 0 10 chr3 6199588 6199687 -211837471 - MER4A LTR ERV1 -566 98 1 805 172 79 16 chr3 6199687 6199984 -211837174 + LTR54B LTR ERV1 54 405 -105 2396 102 83 137 chr3 6199998 6200575 -211836583 - LTR10A LTR ERV1 -63 546 1 581 150 9 9 chr3 6200575 6200688 -211836470 + LTR54 LTR ERV1 394 506 -4 520 296 51 5 chr3 6202538 6202734 -211834424 + L1ME LINE L1 5466 5670 -500 7295 97 15 2 chr3 6202832 6203905 -211833253 + L1P LINE L1 1850 2936 -3210 26 0 0 0 chr3 6204141 6204167 -211832991 + AT_rich Low_complexity Low_complexity 1 26 0 566 236 45 68 chr3 6204261 6204481 -211832677 + MIR SINE MIR 12 226 -36 2194 127 0 7 chr3 6204481 6204789 -211832369 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr3 6205446 6205475 -211831683 + AT_rich Low_complexity Low_complexity 1 29 0 2189 95 3 0 chr3 6206067 6206361 -211830797 + AluSp SINE Alu 1 295 -18 909 93 0 0 chr3 6206363 6206492 -211830666 + (TA)n Simple_repeat Simple_repeat 2 130 0 1176 185 88 55 chr3 6206641 6207004 -211830154 - MER39 LTR ERV1 -25 682 308 246 242 30 61 chr3 6206977 6207076 -211830082 - LTR48B LTR ERV1 -544 100 5 * 219 302 70 12 chr3 6208361 6208447 -211828711 - L2 LINE L2 -458 2856 2766 2384 93 3 0 chr3 6208944 6209254 -211827904 - AluSp SINE Alu -1 312 2 14732 96 4 16 chr3 6209659 6211833 -211825325 + HERVH LTR ERV1 845 2992 -4721 897 142 20 0 chr3 6211819 6211967 -211825191 + HERVH LTR ERV1 3140 3290 -4423 * 3254 113 6 8 chr3 6211957 6212460 -211824698 + HERVH LTR ERV1 3492 3993 -3720 4406 138 0 1 chr3 6212464 6213125 -211824033 + HERVH LTR ERV1 4490 5149 -2564 1363 113 38 0 chr3 6213126 6213338 -211823820 + HERVH LTR ERV1 5600 5819 -1894 * 2342 103 48 13 chr3 6213336 6213715 -211823443 + HERVH LTR ERV1 7322 7713 0 2794 78 92 5 chr3 6213715 6214127 -211823031 + LTR7 LTR ERV1 1 448 -2 308 247 6 137 chr3 6214165 6214347 -211822811 - L1MEd LINE L1 -4481 1648 1491 268 302 70 43 chr3 6214464 6215084 -211822074 - L1MEd LINE L1 -4618 1511 889 504 205 117 23 chr3 6215095 6215266 -211821892 - MER53 DNA DNA -2 187 1 27 73 0 0 chr3 6215303 6215358 -211821800 + AT_rich Low_complexity Low_complexity 1 55 0 1226 235 88 122 chr3 6215452 6216074 -211821084 + MLT1E1 LTR MaLR 3 603 -51 555 243 108 47 chr3 6217228 6217524 -211819634 + HAL1 LINE L1 1251 1564 -943 573 136 17 8 chr3 6217537 6217655 -211819503 + GA-rich Low_complexity Low_complexity 2 120 0 259 304 38 0 chr3 6218650 6218729 -211818429 - L2 LINE L2 -37 3276 3195 2764 99 0 0 chr3 6219197 6219561 -211817597 + THE1B LTR MaLR 1 364 0 2713 87 3 3 chr3 6220209 6220579 -211816579 + L1PA8 LINE L1 5795 6164 -8 210 37 0 0 chr3 6220858 6220885 -211816273 + (CA)n Simple_repeat Simple_repeat 1 27 0 897 194 0 29 chr3 6222214 6222384 -211814774 - FRAM SINE Alu -12 164 1 3259 197 43 64 chr3 6222411 6222918 -211814240 + L1MC3 LINE L1 6893 7374 -411 1096 204 42 4 chr3 6222918 6223178 -211813980 + L1PB4 LINE L1 5887 6156 0 3259 197 43 64 chr3 6223178 6223562 -211813596 + L1MC3 LINE L1 7374 7765 -20 2456 84 3 0 chr3 6223696 6224005 -211813153 - AluSp SINE Alu -3 310 1 2237 104 3 0 chr3 6226516 6226814 -211810344 + AluY SINE Alu 1 299 -12 278 290 161 0 chr3 6227879 6227972 -211809186 + MIR SINE MIR 52 159 -103 904 237 50 80 chr3 6227976 6228352 -211808806 + MLT1C LTR MaLR 1 365 -102 458 241 0 18 chr3 6228695 6228807 -211808351 + MLT1C LTR MaLR 358 467 0 1048 92 7 0 chr3 6229454 6229596 -211807562 + L1P LINE L1 2 144 -6002 1057 30 0 23 chr3 6229602 6229733 -211807425 + L1P1 LINE L1 5517 5644 -511 2297 90 0 0 chr3 6229734 6230022 -211807136 + AluY SINE Alu 10 297 -14 1770 176 115 16 chr3 6230022 6230517 -211806641 - L1M4c LINE L1 -4334 2048 1374 312 27 0 0 chr3 6230529 6230566 -211806592 + (TG)n Simple_repeat Simple_repeat 2 38 0 1993 172 112 84 chr3 6230968 6231614 -211805544 + MER4A LTR ERV1 1 664 0 1604 186 28 34 chr3 6231803 6232130 -211805028 + MER21B LTR ERV1 1 325 -538 1809 238 49 10 chr3 6232191 6232599 -211804559 + MER21B LTR ERV1 425 848 -15 435 321 93 22 chr3 6233456 6233873 -211803285 + L1ME4a LINE L1 5673 6119 -2 255 152 0 0 chr3 6234757 6234803 -211802355 + A-rich Low_complexity Low_complexity 1 46 0 367 328 15 15 chr3 6234935 6235066 -211802092 - L2 LINE L2 0 3313 3183 1185 231 9 47 chr3 6235656 6235976 -211801182 + L1MD2 LINE L1 6023 6330 -29 23 33 0 0 chr3 6237715 6237745 -211799413 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 6238047 6238085 -211799073 + AT_rich Low_complexity Low_complexity 1 38 0 2078 92 7 0 chr3 6238690 6238963 -211798195 + AluSc SINE Alu 2 276 -33 180 0 0 0 chr3 6239005 6239025 -211798133 + (GA)n Simple_repeat Simple_repeat 2 21 0 3576 187 29 22 chr3 6239485 6240894 -211796264 + L1MA9 LINE L1 4642 6176 -136 210 37 0 0 chr3 6240894 6240921 -211796237 + (CA)n Simple_repeat Simple_repeat 2 28 0 3576 187 29 22 chr3 6240921 6241059 -211796099 + L1MA9 LINE L1 6176 6312 0 22 0 0 0 chr3 6242370 6242392 -211794766 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 6242750 6242787 -211794371 + AT_rich Low_complexity Low_complexity 1 37 0 746 182 127 0 chr3 6243137 6243284 -211793874 - MSTA LTR MaLR -1 427 260 934 175 11 6 chr3 6243284 6243467 -211793691 - LTR2 LTR ERV1 0 449 266 817 180 0 136 chr3 6243524 6243752 -211793406 - Harlequin LTR ERV1 -1 6895 6699 1382 67 5 10 chr3 6244496 6244704 -211792454 + LTR7 LTR ERV1 242 448 -2 512 272 69 6 chr3 6244783 6244956 -211792202 + MER5A DNA MER1_type 4 187 -2 1042 183 0 0 chr3 6245232 6245401 -211791757 + FRAM SINE Alu 1 169 -7 747 248 96 0 chr3 6245427 6245625 -211791533 + MIR SINE MIR 46 262 0 2102 160 77 15 chr3 6245853 6246254 -211790904 - MSTB LTR MaLR 0 426 1 1679 190 0 43 chr3 6246574 6246900 -211790258 - AluJb SINE Alu 0 312 1 2912 208 64 29 chr3 6247775 6248560 -211788598 + L1MC2 LINE L1 5416 6227 -117 3438 169 51 34 chr3 6248990 6249159 -211787999 - L1MA6 LINE L1 -10 7311 7147 2272 168 20 0 chr3 6249159 6249552 -211787606 - MER57A LTR ERV1 0 403 3 2171 120 3 7 chr3 6249555 6249864 -211787294 + AluSx SINE Alu 3 310 -2 3438 169 51 34 chr3 6249864 6250124 -211787034 - L1MA6 LINE L1 -175 7146 6892 2389 115 16 19 chr3 6250124 6250498 -211786660 + THE1C LTR MaLR 3 375 0 3438 169 51 34 chr3 6250498 6250899 -211786259 - L1MA6 LINE L1 -429 6892 6461 * 9749 228 44 28 chr3 6250898 6251463 -211785695 - L1MA6 LINE L1 -1408 5759 5205 189 0 0 0 chr3 6251463 6251484 -211785674 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 9749 228 44 28 chr3 6251484 6255204 -211781954 - L1MA6 LINE L1 -1962 5205 1707 1331 307 58 53 chr3 6255481 6256123 -211781035 - L1MA6 LINE L1 -6144 1024 1 196 307 51 117 chr3 6256262 6256399 -211780759 + MIR3 SINE MIR 30 157 -51 1110 36 0 0 chr3 6256769 6256906 -211780252 - L1PA4 LINE L1 -3 6152 6016 631 275 13 61 chr3 6257285 6257514 -211779644 - MER20 DNA MER1_type -1 218 1 1152 199 55 65 chr3 6257604 6258020 -211779138 - L1MB8 LINE L1 -9 6169 5758 408 289 79 3 chr3 6258122 6258451 -211778707 - L1MEc LINE L1 -3653 2562 2209 301 311 88 51 chr3 6258462 6258513 -211778645 - L1MEc LINE L1 -4159 2237 2189 7072 59 6 1 chr3 6258513 6259612 -211777546 + L1PA8 LINE L1 5070 6172 0 301 311 88 51 chr3 6259612 6259891 -211777267 - L1MEc LINE L1 -4207 2189 1895 2769 92 92 5 chr3 6259893 6260305 -211776853 + LTR7 LTR ERV1 1 448 -2 4411 87 42 5 chr3 6260307 6260971 -211776187 + HERVH LTR ERV1 1 689 -7024 32 26 0 0 chr3 6262082 6262121 -211775037 + AT_rich Low_complexity Low_complexity 1 39 0 663 295 92 4 chr3 6262233 6262494 -211774664 + MLT1F LTR MaLR 1 284 -258 303 193 45 23 chr3 6262488 6262576 -211774582 + MLT1F LTR MaLR 474 563 -4 * 333 269 0 42 chr3 6262661 6262780 -211774378 + MLT1-int LTR MaLR 437 550 -821 1682 64 0 0 chr3 6262992 6263195 -211773963 - AluY SINE Alu -11 300 98 804 211 36 135 chr3 6263245 6263666 -211773492 - MLT1B LTR MaLR -8 382 4 1605 230 44 80 chr3 6263673 6264537 -211772621 - MLT1C-int LTR MaLR -4 1705 557 1073 164 13 4 chr3 6264521 6264784 -211772374 - MLT1C-int LTR MaLR -988 383 1 * 1133 206 124 79 chr3 6264784 6265226 -211771932 - MLT1C LTR MaLR 0 467 6 27 49 0 0 chr3 6265287 6265328 -211771830 + AT_rich Low_complexity Low_complexity 1 41 0 328 304 14 40 chr3 6265370 6265518 -211771640 + L1ME LINE L1 3682 3825 -2321 246 276 71 8 chr3 6265522 6265649 -211771509 - MLT1J LTR MaLR -3 508 374 270 314 20 52 chr3 6265754 6265907 -211771251 - MLT1J LTR MaLR -312 199 52 304 289 60 24 chr3 6266614 6266780 -211770378 + L1ME LINE L1 4545 4716 -1430 8403 38 2 0 chr3 6266827 6267898 -211769260 - L1PA3 LINE L1 -1782 4364 3292 8660 23 0 0 chr3 6267898 6269686 -211767472 + L1PA3 LINE L1 4365 6153 -2 29 47 0 0 chr3 6269944 6269987 -211767171 + AT_rich Low_complexity Low_complexity 1 43 0 254 272 39 39 chr3 6271169 6271272 -211765886 + L1ME LINE L1 5727 5829 -333 1439 286 12 45 chr3 6271498 6272008 -211765150 + L1MA4A LINE L1 1 493 -6356 4231 208 24 35 chr3 6272070 6272851 -211764307 + L1MA4A LINE L1 1168 1935 -4914 2260 114 0 16 chr3 6272851 6273168 -211763990 + AluSx SINE Alu 1 312 0 4231 208 24 35 chr3 6273168 6273465 -211763693 + L1MA4A LINE L1 1935 2234 -4615 4825 141 6 4 chr3 6273508 6274331 -211762827 + L1PA16 LINE L1 5329 6153 -13 9020 180 45 10 chr3 6274355 6275492 -211761666 + L1MA4A LINE L1 3881 4976 -2029 2547 65 0 0 chr3 6275492 6275800 -211761358 + AluY SINE Alu 1 308 -3 9020 180 45 10 chr3 6275800 6276738 -211760420 + L1MA4A LINE L1 4976 5879 -1126 1467 118 5 0 chr3 6276738 6276941 -211760217 + AluSq SINE Alu 101 304 -9 9020 180 45 10 chr3 6276941 6277717 -211759441 + L1MA4A LINE L1 5879 6821 -184 403 177 10 42 chr3 6277718 6277814 -211759344 + L1MA4A LINE L1 6890 6982 -23 249 250 31 0 chr3 6278748 6278812 -211758346 - MLT2D LTR ERVL -118 296 231 237 192 39 0 chr3 6279120 6279172 -211757986 - MLT2D LTR ERVL -130 284 231 324 0 0 0 chr3 6279357 6279393 -211757765 + (GA)n Simple_repeat Simple_repeat 2 37 0 355 348 61 6 chr3 6280566 6280730 -211756428 - L1ME LINE L1 -348 5822 5650 1453 158 9 0 chr3 6281078 6281299 -211755859 - AluSg/x SINE Alu -25 287 65 6729 122 14 53 chr3 6281300 6282212 -211754946 - L1M1 LINE L1 -4670 2895 1949 1889 186 0 3 chr3 6282212 6282519 -211754639 - AluJb SINE Alu -6 306 1 6729 122 14 53 chr3 6282519 6282540 -211754618 - L1M1 LINE L1 -5616 1949 1929 2171 108 4 0 chr3 6282540 6282819 -211754339 - AluSp SINE Alu -33 280 1 6729 122 14 53 chr3 6282819 6283139 -211754019 - L1M1 LINE L1 -5636 1929 1690 823 234 6 33 chr3 6283139 6283496 -211753662 - LTR2 LTR ERV1 0 449 3 801 154 0 0 chr3 6283498 6283634 -211753524 - Harlequin LTR ERV1 0 6896 6761 29339 163 8 19 chr3 6283691 6288998 -211748160 - Harlequin LTR ERV1 -1297 6516 1266 2721 164 30 6 chr3 6288999 6289493 -211747665 - Harlequin LTR ERV1 -6796 1017 512 2095 170 3 13 chr3 6289574 6289962 -211747196 - Harlequin LTR ERV1 -6512 384 1 850 201 5 5 chr3 6289962 6290146 -211747012 - LTR2 LTR ERV1 0 449 266 1186 155 71 8 chr3 6290215 6290454 -211746704 - MSTA LTR MaLR -164 264 11 22 0 0 0 chr3 6291057 6291079 -211746079 + AT_rich Low_complexity Low_complexity 1 22 0 1749 117 79 10 chr3 6291371 6291662 -211745496 + L1PA10 LINE L1 5858 6168 0 3049 211 17 43 chr3 6293538 6293922 -211743236 + L1ME2 LINE L1 4867 5259 -1075 2225 138 8 114 chr3 6293922 6294063 -211743095 - Tigger2a DNA MER2_type -2274 434 280 1367 184 54 22 chr3 6294063 6294340 -211742818 - AluJo SINE Alu -26 286 1 2225 138 8 114 chr3 6294340 6294682 -211742476 - Tigger2a DNA MER2_type -2428 280 2 3049 211 17 43 chr3 6294682 6294929 -211742229 + L1ME2 LINE L1 5259 5511 -823 1707 195 72 60 chr3 6294929 6295426 -211741732 - MLT1D LTR MaLR -2 503 1 3049 211 17 43 chr3 6295426 6296095 -211741063 + L1ME2 LINE L1 5511 6331 -3 21 0 0 0 chr3 6296494 6296515 -211740643 + AT_rich Low_complexity Low_complexity 1 21 0 1207 215 11 21 chr3 6298675 6298954 -211738204 - MLT1C LTR MaLR -6 461 186 711 177 77 86 chr3 6298957 6299177 -211737981 - MLT1C LTR MaLR -249 218 1 214 304 0 0 chr3 6299408 6299464 -211737694 + L2 LINE L2 3217 3272 0 1676 169 177 14 chr3 6299498 6299859 -211737299 + MSTA LTR MaLR 9 428 0 191 185 0 19 chr3 6300908 6300962 -211736196 + (TA)n Simple_repeat Simple_repeat 1 53 0 275 290 45 142 chr3 6301153 6301484 -211735674 + L2 LINE L2 2969 3267 -5 1867 125 3 10 chr3 6302697 6302985 -211734173 - L1PA11 LINE L1 -1 6173 5888 21 0 0 0 chr3 6303188 6303209 -211733949 + AT_rich Low_complexity Low_complexity 1 21 0 1266 251 94 23 chr3 6303248 6304181 -211732977 - L1ME1 LINE L1 -18 6148 5122 6685 135 17 8 chr3 6304226 6305533 -211731625 - L1MA1 LINE L1 -8 6294 4974 2009 141 26 32 chr3 6305549 6305926 -211731232 + THE1C LTR MaLR 1 375 0 8723 132 26 31 chr3 6305952 6307380 -211729778 + THE1C-int LTR MaLR 161 1580 0 1314 158 13 18 chr3 6307380 6307608 -211729550 + THE1C LTR MaLR 1 227 -148 658 130 10 0 chr3 6307610 6307710 -211729448 - LTR28 LTR ERV1 -919 101 1 18109 177 37 12 chr3 6307710 6311107 -211726051 - L1M1 LINE L1 -4077 3488 7 2434 262 56 40 chr3 6311105 6311686 -211725472 - L1ME1 LINE L1 -1080 5066 4496 * 1733 173 52 25 chr3 6311686 6312051 -211725107 - THE1C LTR MaLR 0 375 1 2434 262 56 40 chr3 6312051 6312678 -211724480 - L1ME1 LINE L1 -1650 4496 3839 1048 245 31 0 chr3 6312697 6312750 -211724408 - L1ME1 LINE L1 -3408 2738 2688 448 16 33 0 chr3 6312750 6312811 -211724347 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1048 245 31 0 chr3 6312811 6313043 -211724115 - L1ME1 LINE L1 -3458 2688 2444 1150 235 93 55 chr3 6313056 6313410 -211723748 + L1ME1 LINE L1 4682 5021 -1145 1926 154 28 25 chr3 6313410 6313773 -211723385 - THE1B LTR MaLR 0 364 1 1150 235 93 55 chr3 6313773 6314448 -211722710 + L1ME1 LINE L1 5021 5735 -431 24321 107 14 2 chr3 6314456 6318924 -211718234 - L1PA7 LINE L1 -4 6465 1963 235 252 7 43 chr3 6318959 6319098 -211718060 + (CACCC)n Simple_repeat Simple_repeat 2 135 0 186 192 0 0 chr3 6319101 6319153 -211718005 + C-rich Low_complexity Low_complexity 1 52 0 11692 126 14 18 chr3 6319257 6321322 -211715836 - L1PA7 LINE L1 -4379 2082 5 1437 241 32 15 chr3 6321330 6321740 -211715418 + L1ME1 LINE L1 5736 6152 -14 198 286 55 22 chr3 6321818 6321909 -211715249 - L2 LINE L2 -534 2780 2687 180 0 0 0 chr3 6322109 6322129 -211715029 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5776 22 1 0 chr3 6322129 6322799 -211714359 - L1PA3 LINE L1 -11 6144 5474 20663 50 51 4 chr3 6322899 6325567 -211711591 - L1P LINE L1 -3352 2794 2 6220 199 34 14 chr3 6325789 6327039 -211710119 - MSTB-int LTR MaLR -375 1276 1 1316 183 29 17 chr3 6327039 6327280 -211709878 - MSTB LTR MaLR 0 426 183 2131 175 51 24 chr3 6327280 6327771 -211709387 - MER75 DNA T2_type 0 514 11 428 172 0 0 chr3 6327753 6327817 -211709341 - MER75 DNA T2_type -443 71 8 * 1008 193 11 16 chr3 6327817 6328004 -211709154 - MSTB LTR MaLR -240 186 1 803 180 22 51 chr3 6328706 6328884 -211708274 + MER58A DNA MER1_type 45 217 -7 21 0 0 0 chr3 6329276 6329297 -211707861 + AT_rich Low_complexity Low_complexity 1 21 0 227 344 150 22 chr3 6329325 6329505 -211707653 + L3 LINE CR1 1374 1576 -1 280 276 200 5 chr3 6329952 6330162 -211706996 - L1ME4a LINE L1 -113 6008 5758 2185 171 55 0 chr3 6331627 6332025 -211705133 + MSTB LTR MaLR 1 420 -6 349 273 116 0 chr3 6332565 6332686 -211704472 + MIR SINE MIR 65 199 -63 185 397 0 0 chr3 6334290 6334358 -211702800 + L2 LINE L2 2794 2861 -453 190 373 15 0 chr3 6335868 6335935 -211701223 + MIR3 SINE MIR 89 156 -52 211 284 54 0 chr3 6335987 6336061 -211701097 - MIR SINE MIR -5 257 180 1322 206 16 38 chr3 6336105 6336420 -211700738 + AluJo SINE Alu 3 310 -2 514 296 22 22 chr3 6336725 6336904 -211700254 - MLT1J LTR MaLR -325 186 8 198 325 98 32 chr3 6336922 6337045 -211700113 - MIR SINE MIR -115 147 17 24 0 0 0 chr3 6337536 6337560 -211699598 + AT_rich Low_complexity Low_complexity 1 24 0 217 117 83 0 chr3 6337989 6338049 -211699109 + (TA)n Simple_repeat Simple_repeat 1 65 0 333 296 110 76 chr3 6338618 6338858 -211698300 - HAL1 LINE L1 -556 1951 1692 904 223 0 0 chr3 6338858 6339033 -211698125 - FAM SINE Alu 0 175 1 333 296 110 76 chr3 6339033 6339174 -211697984 - HAL1 LINE L1 -815 1692 1557 401 315 123 30 chr3 6339181 6339416 -211697742 - HAL1 LINE L1 -1090 1417 1161 1127 235 39 78 chr3 6339839 6340251 -211696907 - MSTD LTR MaLR 0 396 1 1848 152 3 7 chr3 6340548 6340837 -211696321 - AluSx SINE Alu -14 298 11 233 292 0 0 chr3 6340972 6341044 -211696114 + MER116 DNA Mariner 6 77 -3 1604 64 0 0 chr3 6542333 6542520 -211494638 + AluSc SINE Alu 103 289 -20 711 95 52 26 chr3 6542521 6542637 -211494521 - MER30 DNA MER1_type -111 119 1 535 225 113 31 chr3 6542642 6542802 -211494356 - MIR SINE MIR -61 201 29 382 283 5 43 chr3 6542910 6543094 -211494064 + CT-rich Low_complexity Low_complexity 2 178 0 1959 142 14 7 chr3 6543101 6543396 -211493762 - AluJb SINE Alu -15 297 1 385 216 23 23 chr3 6543526 6543614 -211493544 + L2 LINE L2 3221 3308 -5 1842 148 53 0 chr3 6543693 6543977 -211493181 + AluJb SINE Alu 1 299 -13 1334 104 0 0 chr3 6544067 6544240 -211492918 + AluSp SINE Alu 132 304 -9 1848 169 76 56 chr3 6544812 6545262 -211491896 - MLT1D LTR MaLR -46 459 1 206 286 0 0 chr3 6545262 6545311 -211491847 + MIR SINE MIR 159 207 -55 292 323 21 0 chr3 6545500 6545593 -211491565 - MIR3 SINE MIR -6 202 108 250 283 76 0 chr3 6545960 6546052 -211491106 + MLT1K LTR MaLR 210 308 -280 2032 124 9 25 chr3 6546434 6546749 -211490409 - AluSx SINE Alu -2 310 1 239 295 67 0 chr3 6546924 6547029 -211490129 - L1ME4a LINE L1 0 6121 6010 589 338 18 14 chr3 6547087 6547306 -211489852 - MIR SINE MIR -1 261 42 627 219 14 0 chr3 6547442 6547588 -211489570 - L1MA10 LINE L1 -13 6321 6174 2031 137 14 0 chr3 6547589 6547881 -211489277 + AluJo SINE Alu 1 296 -16 478 262 31 50 chr3 6547881 6548124 -211489034 - L1MD2 LINE L1 -139 6027 5788 241 317 156 75 chr3 6548172 6548371 -211488787 + MIR SINE MIR 38 252 -10 406 293 73 44 chr3 6548976 6549181 -211487977 + MIR SINE MIR 31 241 -21 263 93 23 0 chr3 6549240 6549283 -211487875 + (TG)n Simple_repeat Simple_repeat 2 45 0 892 269 129 6 chr3 6549383 6549717 -211487441 + L3 LINE CR1 1161 1535 -42 291 154 0 0 chr3 6549870 6549909 -211487249 + T-rich Low_complexity Low_complexity 1 39 0 1654 110 4 25 chr3 6550915 6551160 -211485998 - AluSq SINE Alu -7 306 67 1251 154 113 58 chr3 6551171 6551464 -211485694 - AluJo SINE Alu -3 309 1 2036 121 0 27 chr3 6551741 6552038 -211485120 - AluSg SINE Alu -21 289 1 274 234 0 0 chr3 6552395 6552459 -211484699 - MIR SINE MIR -132 130 67 198 313 205 0 chr3 6552489 6552572 -211484586 - L2 LINE L2 -18 3254 3155 2399 100 0 0 chr3 6552614 6552915 -211484243 - AluSx SINE Alu -11 301 1 427 118 24 0 chr3 6553515 6553600 -211483558 + CT-rich Low_complexity Low_complexity 2 88 0 1852 172 3 3 chr3 6553763 6554059 -211483099 - AluJb SINE Alu -16 296 1 183 217 0 0 chr3 6554565 6554625 -211482533 + GA-rich Low_complexity Low_complexity 2 61 0 1346 158 63 60 chr3 6554904 6555189 -211481969 + AluJo SINE Alu 23 308 -4 686 159 0 90 chr3 6555668 6555702 -211481456 - MER94 DNA DNA -1 133 98 2239 110 3 13 chr3 6555702 6556001 -211481157 - AluSx SINE Alu -16 296 1 686 159 0 90 chr3 6556001 6556111 -211481047 - MER94 DNA DNA -36 98 2 2229 157 60 35 chr3 6556150 6556602 -211480556 + MLT1C LTR MaLR 5 467 0 2345 107 22 19 chr3 6556725 6557091 -211480067 - L1PA16 LINE L1 0 6166 5800 2215 118 10 0 chr3 6557092 6557388 -211479770 - AluSq SINE Alu -14 299 1 2233 135 0 3 chr3 6557961 6558273 -211478885 + AluSx SINE Alu 1 311 -1 2137 135 0 3 chr3 6558462 6558766 -211478392 + AluSq SINE Alu 1 303 -10 1767 134 0 4 chr3 6558770 6559016 -211478142 + AluSq SINE Alu 1 245 -68 547 111 12 12 chr3 6559117 6559198 -211477960 - AluY SINE Alu -233 85 5 489 260 52 19 chr3 6559208 6559362 -211477796 - MER112 DNA MER1_type -12 248 90 2165 135 0 16 chr3 6559380 6559692 -211477466 - AluSq SINE Alu -6 307 1 267 222 16 0 chr3 6559860 6559923 -211477235 - MER112 DNA MER1_type -187 73 10 424 252 53 8 chr3 6560190 6560321 -211476837 - MER91C DNA MER1_type 0 140 4 413 267 79 43 chr3 6560324 6560493 -211476665 + MIR SINE MIR 8 191 -17 206 302 79 0 chr3 6560459 6560522 -211476636 + L2 LINE L2 3242 3309 -4 * 228 277 12 48 chr3 6560510 6560593 -211476565 + MIR SINE MIR 134 213 -49 218 279 186 31 chr3 6561945 6562074 -211475084 + L2 LINE L2 3163 3311 -2 1881 110 12 95 chr3 6562724 6562786 -211474372 + L1PBa LINE L1 1552 1618 -5245 2256 108 0 29 chr3 6562786 6563100 -211474058 + AluSx SINE Alu 1 305 -7 1881 110 12 95 chr3 6563100 6563447 -211473711 + L1PBa LINE L1 1618 1927 -4936 274 171 157 14 chr3 6563598 6563668 -211473490 + L2 LINE L2 3229 3308 -5 811 213 38 85 chr3 6563773 6563881 -211473277 - MIR SINE MIR -10 252 159 2008 122 40 0 chr3 6563881 6564177 -211472981 + AluSx SINE Alu 1 308 -4 811 213 38 85 chr3 6564177 6564303 -211472855 - MIR SINE MIR -103 159 29 601 326 84 45 chr3 6565011 6565530 -211471628 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 6565647 6565674 -211471484 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 2095 126 0 3 chr3 6565674 6565959 -211471199 - AluSx SINE Alu -28 284 1 1451 194 0 68 chr3 6565961 6566285 -211470873 - AluJo SINE Alu -10 302 1 318 163 102 41 chr3 6566587 6566685 -211470473 + MLT1K LTR MaLR 485 588 0 342 0 0 0 chr3 6566768 6566806 -211470352 + (A)n Simple_repeat Simple_repeat 1 38 0 26 30 0 0 chr3 6566818 6566851 -211470307 + AT_rich Low_complexity Low_complexity 1 33 0 265 109 0 0 chr3 6567045 6567091 -211470067 + L1PA6 LINE L1 6109 6154 0 29 0 0 0 chr3 6567120 6567149 -211470009 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 6567185 6567323 -211469835 + (TA)n Simple_repeat Simple_repeat 1 143 0 268 324 102 25 chr3 6567330 6567561 -211469597 + L2 LINE L2 2791 3037 -276 225 307 86 57 chr3 6567597 6567737 -211469421 + L2 LINE L2 3168 3311 -2 1956 150 0 25 chr3 6567753 6567933 -211469225 - AluSx SINE Alu 0 312 142 2410 81 3 7 chr3 6567933 6568230 -211468928 - AluSg SINE Alu -13 297 2 1956 150 0 25 chr3 6568230 6568369 -211468789 - AluSx SINE Alu -170 142 1 186 43 0 0 chr3 6568434 6568457 -211468701 + (TA)n Simple_repeat Simple_repeat 1 23 0 1749 153 20 20 chr3 6568457 6568752 -211468406 - AluJb SINE Alu -13 299 5 252 100 0 0 chr3 6568762 6568802 -211468356 + (TG)n Simple_repeat Simple_repeat 1 40 0 1752 181 7 11 chr3 6568802 6568950 -211468208 - AluJo SINE Alu -31 281 133 2441 61 0 52 chr3 6568950 6569276 -211467882 - AluY SINE Alu -2 309 1 1752 181 7 11 chr3 6569276 6569409 -211467749 - AluJo SINE Alu -179 133 1 441 301 58 13 chr3 6569508 6569664 -211467494 + MIR SINE MIR 61 223 -39 343 289 44 61 chr3 6569753 6569933 -211467225 - MIR SINE MIR -41 221 45 1671 179 0 32 chr3 6570137 6570449 -211466709 - AluJo SINE Alu 0 312 11 2198 106 10 0 chr3 6570602 6570894 -211466264 - AluSq SINE Alu -18 295 1 468 0 0 0 chr3 6571235 6571287 -211465871 + (TG)n Simple_repeat Simple_repeat 2 53 0 305 143 0 16 chr3 6571297 6571360 -211465798 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 252 302 0 8 chr3 6571360 6571489 -211465669 - AluSg/x SINE Alu 0 300 173 1919 114 40 11 chr3 6571589 6571861 -211465297 - AluSx SINE Alu -32 280 1 500 177 8 23 chr3 6571874 6572004 -211465154 + CT-rich Low_complexity Low_complexity 1 128 0 2401 99 0 0 chr3 6572004 6572307 -211464851 - AluSx SINE Alu -9 303 1 750 157 0 57 chr3 6572307 6572447 -211464711 - AluJo/FLAM SINE Alu -170 132 1 301 259 61 83 chr3 6572497 6572725 -211464433 + MER102b DNA MER1_type 118 340 -1 579 230 182 7 chr3 6573409 6573557 -211463601 + MER5A DNA MER1_type 1 174 -15 803 172 0 8 chr3 6573571 6573705 -211463453 + FLAM_C SINE Alu 1 133 0 327 65 0 0 chr3 6573705 6573751 -211463407 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 2079 124 16 16 chr3 6573803 6574110 -211463048 + AluSx SINE Alu 1 307 -5 237 163 20 0 chr3 6574151 6574200 -211462958 - Charlie1b DNA MER1_type 0 523 474 2222 117 0 3 chr3 6574222 6574521 -211462637 + AluSx SINE Alu 1 298 -14 48 18 0 0 chr3 6574540 6574595 -211462563 + AT_rich Low_complexity Low_complexity 1 55 0 1552 171 90 22 chr3 6574602 6574970 -211462188 - Charlie1b DNA MER1_type -130 393 1 2216 110 10 0 chr3 6575073 6575372 -211461786 + AluSq SINE Alu 2 303 -10 245 285 17 69 chr3 6575392 6575508 -211461650 + MIR SINE MIR 46 156 -52 2326 66 0 30 chr3 6575513 6575817 -211461341 + AluY SINE Alu 3 297 -14 618 182 0 0 chr3 6576926 6577025 -211460133 - AluJ/FLAM SINE Alu -213 99 1 339 263 150 0 chr3 6577151 6577284 -211459874 - L3 LINE CR1 -153 1424 1272 1479 159 115 30 chr3 6578073 6578343 -211458815 - AluJo SINE Alu -14 298 6 879 230 162 77 chr3 6578347 6578712 -211458446 + MLT1K LTR MaLR 34 429 -159 2287 104 0 10 chr3 6578757 6579065 -211458093 - AluSx SINE Alu -7 305 1 2110 179 35 31 chr3 6579065 6579144 -211458014 - Charlie1 DNA MER1_type -11 2750 2673 2054 153 0 0 chr3 6579144 6579444 -211457714 - AluSx SINE Alu -12 300 1 2110 179 35 31 chr3 6579444 6579906 -211457252 - Charlie1 DNA MER1_type -88 2673 2207 619 250 14 7 chr3 6579902 6580042 -211457116 - Charlie1 DNA MER1_type -2620 141 1 * 593 27 13 0 chr3 6580135 6580210 -211456948 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1702 175 14 3 chr3 6580210 6580489 -211456669 - AluJb SINE Alu -27 285 1 315 342 46 97 chr3 6580557 6580624 -211456534 - L2 LINE L2 -2 3270 3201 3150 173 39 22 chr3 6580624 6581065 -211456093 + MER6A DNA MER2_type 1 433 -432 2319 86 0 3 chr3 6581065 6581357 -211455801 - AluSc SINE Alu -18 291 1 2321 105 0 0 chr3 6581358 6581654 -211455504 - AluSx SINE Alu -16 296 1 3150 173 39 22 chr3 6581654 6581805 -211455353 + MER6A DNA MER2_type 432 605 0 315 342 46 97 chr3 6581805 6582170 -211454988 - L2 LINE L2 -71 3201 2860 2264 114 3 0 chr3 6582395 6582692 -211454466 + AluSg SINE Alu 3 300 -10 1369 267 30 39 chr3 6582811 6583027 -211454131 - LTR16A LTR ERVL 0 450 238 2209 123 0 0 chr3 6583027 6583320 -211453838 + AluSx SINE Alu 1 293 -19 1369 267 30 39 chr3 6583320 6583538 -211453620 - LTR16A LTR ERVL -212 238 20 253 356 9 0 chr3 6583708 6583823 -211453335 + L2 LINE L2 2828 2943 -370 1402 153 142 54 chr3 6583981 6584334 -211452824 - MLT1B LTR MaLR -6 384 1 374 283 35 0 chr3 6584429 6584542 -211452616 - MIR SINE MIR -14 248 132 1830 150 10 20 chr3 6585162 6585321 -211451837 - AluJo SINE Alu -22 290 134 2225 103 0 63 chr3 6585321 6585652 -211451506 - AluSg SINE Alu 0 310 1 1830 150 10 20 chr3 6585652 6585785 -211451373 - AluJo SINE Alu -178 134 1 389 296 53 59 chr3 6586095 6586264 -211450894 - MER5A DNA MER1_type 0 189 22 1838 157 7 20 chr3 6586963 6587263 -211449895 - AluSx SINE Alu -16 296 1 21 0 0 0 chr3 6588190 6588211 -211448947 + AT_rich Low_complexity Low_complexity 1 21 0 2242 109 3 0 chr3 6588470 6588774 -211448384 + AluSx SINE Alu 1 305 -7 470 239 93 71 chr3 6590108 6590427 -211446731 + Charlie7 DNA MER1_type 314 624 -1988 1820 192 13 0 chr3 6590427 6590735 -211446423 + AluJo SINE Alu 1 312 0 470 239 93 71 chr3 6590735 6590848 -211446310 + Charlie7 DNA MER1_type 624 2583 -29 778 90 0 0 chr3 6590868 6590968 -211446190 + HY3 scRNA scRNA 1 100 -1 36 23 0 0 chr3 6590973 6591016 -211446142 + AT_rich Low_complexity Low_complexity 1 43 0 464 152 0 43 chr3 6591199 6591291 -211445867 + AluJ/FRAM SINE Alu 223 310 -2 878 204 86 73 chr3 6591337 6591514 -211445644 + L1M4 LINE L1 5016 5189 -957 2176 136 13 0 chr3 6591514 6591822 -211445336 + AluSx SINE Alu 1 312 0 878 204 86 73 chr3 6591822 6591993 -211445165 + L1M4 LINE L1 5189 5372 -774 1960 129 3 45 chr3 6591993 6592304 -211444854 + AluSx SINE Alu 4 301 -11 878 204 86 73 chr3 6592304 6592326 -211444832 + L1M4 LINE L1 5372 5392 -754 239 188 83 0 chr3 6592336 6592384 -211444774 - L2 LINE L2 0 3272 3221 237 132 0 0 chr3 6592917 6592955 -211444203 + (TTC)n Simple_repeat Simple_repeat 2 39 0 2065 125 3 27 chr3 6593177 6593474 -211443684 + AluSx SINE Alu 1 290 -22 449 274 37 22 chr3 6593474 6593599 -211443559 + MIR3 SINE MIR 58 187 -21 1831 160 13 53 chr3 6593697 6594015 -211443143 + AluSx SINE Alu 1 305 -7 2254 108 0 0 chr3 6594026 6594333 -211442825 + AluSx SINE Alu 1 307 -5 955 145 0 13 chr3 6594333 6594511 -211442647 + AluSg/x SINE Alu 132 307 0 1318 181 115 0 chr3 6594518 6594806 -211442352 - L1MC2 LINE L1 -22 6322 6002 22 0 0 0 chr3 6594807 6594829 -211442329 + AT_rich Low_complexity Low_complexity 1 22 0 1690 171 4 4 chr3 6594878 6595159 -211441999 - AluJb SINE Alu -31 281 1 1941 118 24 10 chr3 6595399 6595695 -211441463 + AluSx SINE Alu 1 300 -12 1014 146 6 0 chr3 6595991 6596162 -211440996 - AluJ SINE Alu 0 312 141 803 167 0 14 chr3 6596213 6596351 -211440807 - AluJ SINE Alu -175 137 2 363 324 171 0 chr3 6596417 6596587 -211440571 + MIR SINE MIR 52 250 -12 877 212 4 100 chr3 6596808 6597049 -211440109 - MER20 DNA MER1_type 0 219 2 334 191 32 0 chr3 6597168 6597231 -211439927 - MER97b DNA MER1_type? -876 177 113 1767 112 6 74 chr3 6597235 6597380 -211439778 + AluSx SINE Alu 1 115 -197 2160 78 28 0 chr3 6597380 6597664 -211439494 + AluSg SINE Alu 14 305 -5 1767 112 6 74 chr3 6597664 6597830 -211439328 + AluSx SINE Alu 115 291 -21 689 146 9 9 chr3 6597839 6597949 -211439209 + AluJb SINE Alu 2 111 -201 260 109 0 22 chr3 6597965 6598011 -211439147 + (GGA)n Simple_repeat Simple_repeat 2 46 0 345 263 32 0 chr3 6598038 6598133 -211439025 - MER97c DNA MER1_type? -966 124 27 213 227 0 30 chr3 6598143 6598209 -211438949 + CT-rich Low_complexity Low_complexity 4 67 0 787 163 7 22 chr3 6598287 6598422 -211438736 + FLAM_C SINE Alu 1 133 0 2496 135 46 14 chr3 6598457 6598487 -211438671 + MER65A LTR ERV1 1 29 -416 1905 126 0 0 chr3 6598487 6598758 -211438400 + AluSx SINE Alu 1 271 -41 2496 135 46 14 chr3 6598758 6599158 -211438000 + MER65A LTR ERV1 29 445 0 2012 127 13 0 chr3 6599651 6599950 -211437208 - AluSg SINE Alu -7 303 1 1801 128 3 61 chr3 6600005 6600318 -211436840 - AluSp SINE Alu -18 295 1 467 50 0 0 chr3 6600845 6600905 -211436253 - Alu SINE Alu -252 61 2 540 157 112 0 chr3 6600905 6600994 -211436164 + MER30 DNA MER1_type 132 230 0 277 267 0 27 chr3 6601158 6601233 -211435925 - MER94 DNA DNA -61 73 1 418 258 144 6 chr3 6601250 6601417 -211435741 - MER102b DNA MER1_type -49 292 103 230 256 14 145 chr3 6601532 6601739 -211435419 - L2 LINE L2 -92 3180 3001 707 283 0 12 chr3 6601795 6601968 -211435190 - MIR SINE MIR -24 238 68 2050 116 0 0 chr3 6602304 6602588 -211434570 + AluSc SINE Alu 1 284 -25 216 175 175 0 chr3 6602634 6602691 -211434467 - MIR SINE MIR -108 100 34 333 284 129 32 chr3 6603381 6603536 -211433622 - L2 LINE L2 -7 3306 3137 1016 192 23 46 chr3 6603556 6603775 -211433383 - MER20 DNA MER1_type -5 214 1 1563 164 7 14 chr3 6603837 6604123 -211433035 + AluJo SINE Alu 14 297 -15 1040 148 61 13 chr3 6604123 6604353 -211432805 - MER33 DNA MER1_type -24 300 60 336 198 143 11 chr3 6604450 6604541 -211432617 + MER5A DNA MER1_type 4 106 -83 222 224 129 12 chr3 6604688 6604773 -211432385 + MIR SINE MIR 99 193 -69 2041 110 3 0 chr3 6605834 6606124 -211431034 + AluSx SINE Alu 1 291 -21 342 76 0 45 chr3 6606136 6606202 -211430956 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 557 245 182 10 chr3 6606429 6606621 -211430537 + MIR SINE MIR 33 257 -5 336 255 92 10 chr3 6606636 6606734 -211430424 - MIR SINE MIR -155 107 2 275 262 0 0 chr3 6606819 6606880 -211430278 + MLT1K LTR MaLR 5 65 -523 676 260 250 32 chr3 6606900 6607212 -211429946 + MLT1K LTR MaLR 206 585 -3 2138 117 3 0 chr3 6607584 6607892 -211429266 - AluSq SINE Alu -4 309 1 181 200 25 0 chr3 6607969 6608009 -211429149 - L2 LINE L2 -5 3267 3227 2184 153 46 57 chr3 6608652 6608700 -211428458 - L1MB4 LINE L1 0 6180 6133 1599 175 3 3 chr3 6608700 6608985 -211428173 - AluJb SINE Alu -17 295 11 2184 153 46 57 chr3 6608985 6609413 -211427745 - L1MB4 LINE L1 -47 6133 5709 280 231 0 0 chr3 6609595 6609647 -211427511 + 5S rRNA rRNA 1 52 -69 646 208 60 24 chr3 6609911 6610079 -211427079 + MIR SINE MIR 72 245 -17 271 167 111 0 chr3 6610329 6610383 -211426775 + MIR SINE MIR 123 182 -80 1758 149 0 34 chr3 6610518 6610841 -211426317 + AluSx SINE Alu 1 312 0 189 94 0 0 chr3 6610929 6610961 -211426197 + (CAACC)n Simple_repeat Simple_repeat 2 33 0 466 209 0 11 chr3 6611091 6611182 -211425976 - MLT1I LTR MaLR -259 150 61 2626 97 28 14 chr3 6611185 6611546 -211425612 + THE1C LTR MaLR 10 375 0 711 261 96 5 chr3 6611608 6611826 -211425332 - MLT1L LTR MaLR -10 605 368 4731 136 16 6 chr3 6611850 6612554 -211424604 + MER50 LTR ERV1 1 711 -23 1921 136 0 28 chr3 6612604 6612921 -211424237 - AluJb SINE Alu -4 308 1 502 281 75 48 chr3 6612924 6613219 -211423939 - MLT1L LTR MaLR -310 305 3 254 259 111 0 chr3 6613262 6613343 -211423815 - MIR SINE MIR -59 203 114 2060 123 0 3 chr3 6613822 6614123 -211423035 + AluSx SINE Alu 1 300 -12 716 201 0 29 chr3 6614384 6614523 -211422635 + FLAM_C SINE Alu 6 140 -3 457 304 125 18 chr3 6614581 6614805 -211422353 - MIR SINE MIR -12 250 3 333 239 14 34 chr3 6614895 6615001 -211422157 - MIR SINE MIR -92 116 14 480 295 95 20 chr3 6615844 6616044 -211421114 + MIR SINE MIR 47 261 -1 185 108 27 0 chr3 6616343 6616380 -211420778 + (TGG)n Simple_repeat Simple_repeat 3 40 0 649 298 102 80 chr3 6616799 6617239 -211419919 - L2 LINE L2 -9 3263 2814 1873 113 57 0 chr3 6617282 6617565 -211419593 - AluSx SINE Alu -9 303 5 223 316 143 0 chr3 6618022 6618120 -211419038 - L2 LINE L2 -5 3308 3197 578 254 9 111 chr3 6618131 6618252 -211418906 - MIR SINE MIR -48 214 123 1934 133 0 14 chr3 6618252 6618545 -211418613 + AluSx SINE Alu 1 289 -23 578 254 9 111 chr3 6618545 6618640 -211418518 - MIR SINE MIR -139 123 20 818 146 0 8 chr3 6618667 6618790 -211418368 - FLAM_C SINE Alu -16 127 6 1054 267 140 32 chr3 6619293 6619757 -211417401 + MER20B DNA MER1_type 2 515 -268 849 205 21 38 chr3 6619863 6620102 -211417056 + MER20B DNA MER1_type 515 749 -34 2112 104 40 0 chr3 6620105 6620403 -211416755 + AluSx SINE Alu 1 310 -2 326 194 97 0 chr3 6620480 6620552 -211416606 + MER20B DNA MER1_type 207 285 -498 444 111 0 0 chr3 6620568 6620640 -211416518 + Alu SINE Alu 237 308 -2 974 243 46 102 chr3 6620722 6621204 -211415954 - L2 LINE L2 -664 2650 2196 1718 126 0 37 chr3 6621523 6621817 -211415341 + AluJb SINE Alu 12 294 -18 409 185 0 0 chr3 6622195 6622260 -211414898 - AluJ/FLAM SINE Alu -246 66 2 1845 147 3 7 chr3 6622722 6623014 -211414144 - AluJb SINE Alu -21 291 1 189 0 0 0 chr3 6623105 6623126 -211414032 + (A)n Simple_repeat Simple_repeat 1 21 0 6293 94 47 10 chr3 6623585 6624519 -211412639 + LTR5 LTR ERVK 1 969 0 1129 123 6 0 chr3 6625611 6625774 -211411384 - AluJ SINE Alu -14 298 135 201 74 0 0 chr3 6626042 6626069 -211411089 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 252 0 0 0 chr3 6626571 6626599 -211410559 + (TA)n Simple_repeat Simple_repeat 1 28 0 2064 128 0 10 chr3 6626786 6627098 -211410060 - AluSg SINE Alu -1 309 1 1613 169 7 23 chr3 6627101 6627403 -211409755 - AluJb SINE Alu -15 297 1 444 277 98 27 chr3 6627705 6627889 -211409269 + MIR SINE MIR 66 262 0 802 141 8 0 chr3 6627995 6628123 -211409035 - AluJ SINE Alu -173 129 1 1504 106 78 78 chr3 6628203 6628496 -211408662 - AluSx SINE Alu -18 294 2 435 271 21 14 chr3 6629137 6629281 -211407877 - MIR SINE MIR 0 262 118 2284 80 0 7 chr3 6629281 6629581 -211407577 - AluSx SINE Alu -13 299 2 328 209 60 11 chr3 6629593 6629683 -211407475 + MLT1J LTR MaLR 416 615 0 2238 148 50 5 chr3 6629877 6630277 -211406881 - L1MC1 LINE L1 -5 6328 5911 2093 132 0 0 chr3 6630287 6630591 -211406567 - AluSx SINE Alu -8 304 1 860 272 158 14 chr3 6630605 6630973 -211406185 - LTR33 LTR ERVL -52 469 49 1012 167 9 79 chr3 6630980 6631207 -211405951 - AluJo SINE Alu -101 211 1 2029 113 3 3 chr3 6631398 6631690 -211405468 - AluSg SINE Alu -18 292 1 1395 168 40 37 chr3 6632051 6632348 -211404810 - AluJo SINE Alu -14 298 1 697 318 55 4 chr3 6632359 6632595 -211404563 - MIR SINE MIR -2 260 13 27 62 0 0 chr3 6633070 6633118 -211404040 + AT_rich Low_complexity Low_complexity 1 48 0 284 250 261 11 chr3 6633400 6633488 -211403670 - MIR SINE MIR -61 147 38 1192 253 48 24 chr3 6633577 6633913 -211403245 - ERVL LTR ERVL -2323 3441 3098 443 267 0 0 chr3 6633977 6634082 -211403076 + HERVL LTR ERVL 5269 5373 -281 593 181 0 0 chr3 6634083 6634177 -211402981 + AluJb SINE Alu 177 270 -42 2267 92 3 10 chr3 6635256 6635570 -211401588 + AluSp SINE Alu 2 313 0 1022 262 148 10 chr3 6635674 6636098 -211401060 + MLT1J2 LTR MaLR 1 450 0 722 266 28 28 chr3 6636221 6636435 -211400723 + MIR SINE MIR 1 214 -48 713 112 70 2 chr3 6637559 6637702 -211399456 - L1MA5A LINE L1 -2 6301 6143 663 132 18 9 chr3 6637702 6637816 -211399342 - AluSp/q SINE Alu -23 290 176 21 57 0 0 chr3 6640270 6640305 -211396853 + AT_rich Low_complexity Low_complexity 1 35 0 1999 126 7 0 chr3 6640357 6640650 -211396508 - AluSx SINE Alu -17 295 1 26 0 0 0 chr3 6641814 6641840 -211395318 + AT_rich Low_complexity Low_complexity 1 26 0 1698 132 28 28 chr3 6641907 6642196 -211394962 - AluJo SINE Alu -23 289 1 364 300 111 37 chr3 6642200 6642390 -211394768 - L1ME4a LINE L1 -122 5999 5796 289 235 41 20 chr3 6642452 6642550 -211394608 - L1ME4a LINE L1 -466 5655 5556 236 350 12 0 chr3 6642634 6642714 -211394444 - MIR SINE MIR -113 149 69 2150 76 0 10 chr3 6642771 6643060 -211394098 - L1MA1 LINE L1 -1 6301 6016 619 242 124 0 chr3 6643505 6643658 -211393500 + MIR SINE MIR 66 237 -25 183 42 0 0 chr3 6644537 6644561 -211392597 + (A)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr3 6644596 6644619 -211392539 + (TG)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr3 6644692 6644741 -211392417 + (TG)n Simple_repeat Simple_repeat 2 50 0 436 241 20 79 chr3 6646598 6646801 -211390357 - L1MC5 LINE L1 -34 7927 7737 374 298 38 15 chr3 6647911 6648042 -211389116 - MIR SINE MIR -12 250 117 186 227 0 91 chr3 6648720 6648786 -211388372 - L2 LINE L2 -216 3056 2997 193 211 193 0 chr3 6648957 6649014 -211388144 + L2 LINE L2 3204 3271 -1 384 293 173 42 chr3 6649254 6649445 -211387713 + MIR SINE MIR 44 259 -3 311 259 0 0 chr3 6649925 6649983 -211387175 + L2 LINE L2 3215 3272 0 328 85 0 0 chr3 6650530 6650577 -211386581 - L1MB7 LINE L1 -8 6176 6130 537 323 12 6 chr3 6650651 6650818 -211386340 - MER91A DNA MER1_type -27 169 2 455 253 58 93 chr3 6652068 6652215 -211384943 + L1ME3 LINE L1 5946 6084 -78 2074 132 21 6 chr3 6652215 6652548 -211384610 + L1PA13 LINE L1 5826 6163 0 455 253 58 93 chr3 6652548 6652625 -211384533 + L1ME3 LINE L1 6084 6162 0 473 178 0 0 chr3 6653784 6653857 -211383301 - MER2 DNA MER2_type 0 345 273 185 294 39 0 chr3 6653876 6653927 -211383231 - MIR SINE MIR -133 129 77 1112 269 128 39 chr3 6653980 6654506 -211382652 - MLT1H1 LTR MaLR -5 548 1 408 247 33 60 chr3 6656495 6656645 -211380513 + MIR SINE MIR 28 173 -89 764 174 0 0 chr3 6656957 6657078 -211380080 - FLAM_A SINE Alu -11 122 2 31 0 0 0 chr3 6657081 6657112 -211380046 + AT_rich Low_complexity Low_complexity 1 31 0 369 43 0 0 chr3 6657326 6657373 -211379785 - MADE1 DNA Mariner 0 80 34 185 105 0 53 chr3 6657474 6657512 -211379646 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 2028 91 0 4 chr3 6658136 6658451 -211378707 - AluSx SINE Alu 0 320 7 818 250 18 14 chr3 6658759 6658979 -211378179 + MER58A DNA MER1_type 1 221 -3 792 181 11 27 chr3 6659182 6659533 -211377625 + CT-rich Low_complexity Low_complexity 1 345 0 396 316 100 40 chr3 6659891 6660290 -211376868 + L2 LINE L2 2107 2529 -785 259 341 12 0 chr3 6660347 6660432 -211376726 - MIR SINE MIR -169 93 8 184 222 44 0 chr3 6660479 6660524 -211376634 + L2 LINE L2 2601 2647 -667 216 267 78 43 chr3 6660922 6661038 -211376120 + L2 LINE L2 3150 3269 -3 203 304 11 76 chr3 6661046 6661138 -211376020 + MIR SINE MIR 158 243 -19 371 313 9 0 chr3 6661585 6661700 -211375458 - MIR SINE MIR -92 170 55 412 195 114 57 chr3 6662431 6662554 -211374604 - MIR3 SINE MIR -69 139 10 189 107 0 0 chr3 6665049 6665077 -211372081 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr3 6666459 6666482 -211370676 + AT_rich Low_complexity Low_complexity 1 23 0 608 233 0 0 chr3 6667004 6667120 -211370038 - FLAM_A SINE Alu -17 116 1 531 282 62 66 chr3 6667138 6667443 -211369715 - L2 LINE L2 -19 3253 2950 240 289 72 40 chr3 6668131 6668283 -211368875 - MIR SINE MIR -34 228 72 189 0 0 0 chr3 6669492 6669513 -211367645 + (T)n Simple_repeat Simple_repeat 1 21 0 815 129 0 0 chr3 6669727 6669851 -211367307 - FLAM_C SINE Alu -9 134 11 2671 83 0 0 chr3 6670647 6670998 -211366160 - L1PA14 LINE L1 0 6161 5811 427 326 7 28 chr3 6671351 6671492 -211365666 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 6671875 6672095 -211365063 + MIR SINE MIR 8 245 -17 471 298 7 28 chr3 6673042 6673183 -211363975 + MIR3 SINE MIR 10 147 -61 403 163 12 12 chr3 6673817 6673897 -211363261 + MIR3 SINE MIR 82 161 -47 229 277 11 96 chr3 6674440 6674534 -211362624 + MIR3 SINE MIR 79 167 -41 519 217 32 106 chr3 6674754 6674838 -211362320 - L1ME2 LINE L1 -9 6155 6066 1804 194 77 58 chr3 6674838 6675334 -211361824 - MLT1D LTR MaLR 0 505 1 519 217 32 106 chr3 6675334 6675455 -211361703 - L1ME2 LINE L1 -98 6066 5964 2342 132 71 0 chr3 6675455 6675848 -211361310 - L1PA16 LINE L1 -5 6161 5741 252 186 0 34 chr3 6676493 6676552 -211360606 - FLAM SINE Alu -1 132 76 588 224 109 21 chr3 6676638 6676830 -211360328 - MIR SINE MIR -53 209 1 357 339 0 0 chr3 6676972 6677081 -211360077 - MIR SINE MIR -147 115 7 4086 84 20 32 chr3 6677094 6677691 -211359467 + L1PA10 LINE L1 5576 6165 -3 513 331 118 10 chr3 6678700 6679014 -211358144 - L2 LINE L2 0 3313 2966 705 118 0 0 chr3 6679261 6679371 -211357787 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 207 0 0 0 chr3 6679387 6679410 -211357748 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 918 155 94 75 chr3 6681541 6681754 -211355404 - MER20 DNA MER1_type -2 217 1 262 271 0 0 chr3 6681784 6681843 -211355315 - MIR SINE MIR 0 262 204 1205 168 72 50 chr3 6681867 6682129 -211355029 - AluJo SINE Alu -38 274 7 741 288 14 9 chr3 6682132 6682347 -211354811 - MIR SINE MIR -42 220 5 289 247 39 13 chr3 6682345 6682422 -211354736 + MIR SINE MIR 156 234 -28 * 234 162 0 0 chr3 6682513 6682550 -211354608 - MIR SINE MIR -59 149 113 2005 115 34 0 chr3 6683221 6683517 -211353641 - AluSx SINE Alu -1 311 6 187 209 0 0 chr3 6683778 6683821 -211353337 + L2 LINE L2 3270 3312 -1 358 219 289 0 chr3 6683982 6684096 -211353062 - MIR SINE MIR -108 154 8 256 284 68 0 chr3 6685585 6685659 -211351499 - L2 LINE L2 -186 3086 3008 185 319 0 0 chr3 6687319 6687388 -211349770 - L2 LINE L2 -9 3263 3195 570 279 132 6 chr3 6688486 6688770 -211348388 - L1MC4a LINE L1 -316 5805 5561 2032 99 31 7 chr3 6690400 6690692 -211346466 - AluSg SINE Alu -11 299 1 493 72 14 0 chr3 6694132 6694201 -211342957 + MADE1 DNA Mariner 1 70 -10 441 39 0 0 chr3 6694195 6694247 -211342911 - MADE1 DNA Mariner -27 53 2 * 630 262 126 19 chr3 6694340 6694554 -211342604 + MIR SINE MIR 14 250 -12 392 241 66 99 chr3 6695933 6696026 -211341132 + MIR SINE MIR 52 147 -115 1836 147 3 3 chr3 6696026 6696312 -211340846 + AluJb SINE Alu 4 289 -23 392 241 66 99 chr3 6696312 6696430 -211340728 + MIR SINE MIR 147 256 -6 300 230 40 14 chr3 6696757 6696831 -211340327 + MER117 DNA MER1_type 44 119 -78 366 302 82 80 chr3 6698322 6698886 -211338272 - L2 LINE L2 0 3272 2702 22 0 0 0 chr3 6698889 6698911 -211338247 + AT_rich Low_complexity Low_complexity 1 22 0 1977 106 10 51 chr3 6698921 6699232 -211337926 + AluSx SINE Alu 1 298 -14 343 250 92 58 chr3 6699479 6699599 -211337559 - MIR SINE MIR -114 148 25 378 327 31 25 chr3 6699983 6700142 -211337016 - MIR3 SINE MIR -13 195 36 751 237 72 10 chr3 6701307 6701501 -211335657 - MER3 DNA MER1_type -1 208 3 701 117 0 0 chr3 6701585 6701688 -211335470 + AluSg/x SINE Alu 208 310 -2 23 0 0 0 chr3 6701712 6701735 -211335423 + AT_rich Low_complexity Low_complexity 1 23 0 1862 123 6 43 chr3 6701735 6702059 -211335099 + AluSx SINE Alu 1 312 0 2225 110 0 0 chr3 6703930 6704240 -211332918 - AluSg SINE Alu 0 310 1 277 263 140 9 chr3 6704535 6704649 -211332509 + MIR3 SINE MIR 37 165 -43 2015 146 33 9 chr3 6705605 6705934 -211331224 - MER1B DNA MER1_type 0 337 1 1809 190 103 38 chr3 6706197 6706671 -211330487 - MLT1D LTR MaLR 0 505 1 2238 203 67 54 chr3 6706680 6707236 -211329922 - MLT1F1 LTR MaLR -4 563 1 285 216 135 0 chr3 6707726 6707800 -211329358 - L1MC5 LINE L1 -70 7891 7808 303 215 114 25 chr3 6708078 6708157 -211329001 + MIR3 SINE MIR 114 199 -9 491 329 7 0 chr3 6709758 6709895 -211327263 - MIR3 SINE MIR -41 167 30 223 309 0 37 chr3 6711046 6711127 -211326031 + MIR SINE MIR 31 108 -100 716 186 127 56 chr3 6711991 6712330 -211324828 - L1MC5 LINE L1 -34 7927 7565 3565 199 36 26 chr3 6712480 6713411 -211323747 + L1ME1 LINE L1 5196 6134 -32 233 304 180 12 chr3 6713412 6713550 -211323608 + MIR SINE MIR 7 164 -44 337 305 108 89 chr3 6714316 6714585 -211322573 - L2 LINE L2 -85 3187 2914 1946 141 0 20 chr3 6715804 6716131 -211321027 + AluSx SINE Alu 1 312 0 537 252 41 0 chr3 6716412 6716559 -211320599 + MER103 DNA DNA 2 154 -12 216 227 0 30 chr3 6716820 6716863 -211320295 + GA-rich Low_complexity Low_complexity 3 45 -21 1814 143 10 22 chr3 6716863 6717177 -211319981 + AluSx SINE Alu 1 310 -2 216 227 0 30 chr3 6717177 6717199 -211319959 + GA-rich Low_complexity Low_complexity 45 66 0 1707 142 184 6 chr3 6717267 6717626 -211319532 - MSTA LTR MaLR -2 426 4 2043 106 3 13 chr3 6718192 6718494 -211318664 - AluSx SINE Alu -13 299 1 898 289 100 22 chr3 6719388 6719797 -211317361 - MLT1K LTR MaLR -4 584 144 423 288 42 8 chr3 6721738 6721856 -211315302 + MIR SINE MIR 101 222 -40 263 247 56 34 chr3 6722382 6722471 -211314687 - L2 LINE L2 -29 3243 3153 487 262 48 12 chr3 6722530 6722701 -211314457 - MIR SINE MIR -69 139 10 820 335 67 23 chr3 6723268 6723743 -211313415 + L1ME4a LINE L1 5319 5814 -307 342 184 87 0 chr3 6723879 6723982 -211313176 + L1ME4a LINE L1 6008 6119 -2 517 269 60 7 chr3 6724366 6724515 -211312643 - MIR3 SINE MIR -15 193 37 524 251 134 67 chr3 6724917 6725140 -211312018 - MIR SINE MIR -1 261 24 384 273 132 57 chr3 6726022 6726249 -211310909 + L1ME LINE L1 5547 5790 -331 1708 171 10 3 chr3 6726362 6726660 -211310498 - AluJo SINE Alu -12 300 1 240 304 14 0 chr3 6727745 6727814 -211309344 - L2 LINE L2 -8 3264 3195 298 308 183 23 chr3 6727970 6728233 -211308925 - L2 LINE L2 -349 2965 2661 510 307 42 16 chr3 6729743 6729932 -211307226 + MIR SINE MIR 47 240 -22 4127 185 127 155 chr3 6730194 6730308 -211306850 - L1MC4 LINE L1 0 8042 7926 279 0 0 0 chr3 6730308 6730339 -211306819 + (CA)n Simple_repeat Simple_repeat 2 32 0 4127 185 127 155 chr3 6730339 6730772 -211306386 - L1MC4 LINE L1 -116 7926 7482 1348 159 4 17 chr3 6730772 6731011 -211306147 - AluSq SINE Alu -77 236 1 4127 185 127 155 chr3 6731011 6731977 -211305181 - L1MC4 LINE L1 -560 7482 6340 314 317 169 6 chr3 6732066 6732249 -211304909 - MIR SINE MIR -49 213 1 510 250 147 6 chr3 6733671 6733827 -211303331 - MER5A DNA MER1_type -3 186 9 321 260 114 16 chr3 6734195 6734318 -211302840 - MIR SINE MIR -113 149 15 306 230 135 48 chr3 6735778 6735904 -211301254 + MER117 DNA MER1_type 1 137 -60 282 282 19 19 chr3 6736349 6736452 -211300706 + MIR SINE MIR 36 138 -70 2132 141 34 44 chr3 6737698 6738109 -211299049 + L1MA4A LINE L1 5715 6121 -182 508 209 0 0 chr3 6738099 6738212 -211298946 + L1MA4A LINE L1 6044 6279 0 * 536 297 60 6 chr3 6738602 6738784 -211298374 - MIR SINE MIR -49 213 22 331 324 19 9 chr3 6741900 6742005 -211295153 + MIR3 SINE MIR 89 194 -14 182 219 0 0 chr3 6743429 6743461 -211293697 - MIR SINE MIR -72 190 159 1580 193 38 41 chr3 6743840 6744233 -211292925 - L1MC2 LINE L1 -5 6339 5948 2248 90 0 28 chr3 6744277 6744598 -211292560 - AluSx SINE Alu 0 312 1 357 132 0 0 chr3 6745415 6745454 -211291704 + (TC)n Simple_repeat Simple_repeat 1 42 -26 210 37 0 0 chr3 6745454 6745481 -211291677 + (CA)n Simple_repeat Simple_repeat 1 27 0 357 132 0 0 chr3 6745481 6745509 -211291649 + (TC)n Simple_repeat Simple_repeat 41 68 0 1478 118 113 17 chr3 6746730 6746968 -211290190 + AluSx SINE Alu 33 293 -19 279 333 42 33 chr3 6747353 6747473 -211289685 + L2 LINE L2 3151 3271 -1 1689 174 14 3 chr3 6748221 6748515 -211288643 - AluJo SINE Alu -15 297 1 205 267 0 0 chr3 6748542 6748587 -211288571 + L2 LINE L2 3182 3226 -87 182 245 20 0 chr3 6748626 6748675 -211288483 + L2 LINE L2 3204 3253 -60 665 225 116 0 chr3 6749673 6749846 -211287312 + MER58A DNA MER1_type 30 222 -2 1454 116 39 27 chr3 6750508 6750766 -211286392 + L1MB3 LINE L1 5923 6183 0 216 0 0 0 chr3 6751058 6751082 -211286076 + (T)n Simple_repeat Simple_repeat 1 24 0 413 303 8 16 chr3 6751725 6751847 -211285311 - L2 LINE L2 -1 3271 3151 2365 91 3 0 chr3 6753369 6753666 -211283492 + AluSp SINE Alu 2 299 -14 207 300 14 43 chr3 6753687 6753757 -211283401 - MIR3 SINE MIR -33 175 108 261 0 0 0 chr3 6754352 6754381 -211282777 + (T)n Simple_repeat Simple_repeat 1 29 0 440 302 37 135 chr3 6755782 6756130 -211281028 - L2 LINE L2 -1 3271 2958 2036 123 38 0 chr3 6756686 6756979 -211280179 - AluSx SINE Alu -8 304 1 189 0 0 0 chr3 6757397 6757418 -211279740 + (T)n Simple_repeat Simple_repeat 1 21 0 1014 174 56 0 chr3 6757753 6757931 -211279227 + MER5A DNA MER1_type 1 188 -1 1708 163 23 23 chr3 6758446 6758747 -211278411 - AluJb SINE Alu -11 301 1 282 279 123 0 chr3 6759328 6759450 -211277708 - MIR SINE MIR -27 235 99 23 0 0 0 chr3 6761787 6761810 -211275348 + AT_rich Low_complexity Low_complexity 1 23 0 274 185 46 46 chr3 6764156 6764221 -211272937 - MIR SINE MIR -63 145 81 262 397 64 14 chr3 6765722 6765941 -211271217 + MIR SINE MIR 2 231 -31 2146 148 0 0 chr3 6766287 6766590 -211270568 + AluSx SINE Alu 1 303 -9 3917 144 29 64 chr3 6766826 6766996 -211270162 + LTR39 LTR ERV1 1 175 -608 1709 141 57 4 chr3 6766996 6767338 -211269820 + AluJb SINE Alu 7 362 0 3917 144 29 64 chr3 6767338 6767967 -211269191 + LTR39 LTR ERV1 175 773 -10 201 305 51 76 chr3 6768560 6768612 -211268546 - MIR SINE MIR -58 150 98 2346 105 3 6 chr3 6768612 6768925 -211268233 + AluSp SINE Alu 1 312 -1 201 305 51 76 chr3 6768925 6768990 -211268168 - MIR SINE MIR -110 98 36 2505 134 38 14 chr3 6769924 6770342 -211266816 + MSTA LTR MaLR 1 428 0 780 229 62 5 chr3 6770342 6770617 -211266541 + L1MC/D LINE L1 5520 5810 -372 1647 149 41 17 chr3 6770880 6771324 -211265834 - MLT1D LTR MaLR 0 505 1 249 33 0 0 chr3 6771587 6771617 -211265541 + (CA)n Simple_repeat Simple_repeat 2 31 0 271 138 52 17 chr3 6771842 6771900 -211265258 - L1M LINE L1 -797 5369 5310 502 140 82 148 chr3 6771974 6772092 -211265066 - L1M4 LINE L1 -871 5275 5182 826 154 23 0 chr3 6772092 6772222 -211264936 - FLAM_C SINE Alu 0 133 1 502 140 82 148 chr3 6772222 6772360 -211264798 - L1M4 LINE L1 -964 5182 5036 845 184 0 26 chr3 6772360 6772550 -211264608 + MER3 DNA MER1_type 1 185 -24 998 205 19 19 chr3 6772567 6772835 -211264323 - L1M4 LINE L1 -1103 5043 4776 743 208 0 0 chr3 6772842 6772991 -211264167 + L1MB1 LINE L1 4843 4991 -1155 658 157 0 5 chr3 6772991 6773153 -211264005 + AluJo SINE Alu 84 310 -2 4504 147 26 57 chr3 6773155 6773513 -211263645 + L1MB1 LINE L1 4980 5347 -821 1892 164 0 16 chr3 6773513 6773818 -211263340 + AluJb SINE Alu 4 303 -9 4504 147 26 57 chr3 6773818 6774642 -211262516 + L1MB1 LINE L1 5347 6145 -23 7205 228 82 23 chr3 6774668 6775183 -211261975 - L1M4 LINE L1 -1379 4767 4283 2224 73 0 0 chr3 6775183 6775456 -211261702 - AluY SINE Alu -38 273 1 7205 228 82 23 chr3 6775456 6776088 -211261070 - L1M4 LINE L1 -1863 4283 3689 1703 180 3 40 chr3 6776088 6776410 -211260748 - AluJo SINE Alu -2 310 1 7205 228 82 23 chr3 6776410 6777700 -211259458 - L1M4 LINE L1 -2457 3689 2187 679 307 55 71 chr3 6777958 6778411 -211258747 + L2 LINE L2 2224 2669 -645 342 320 76 100 chr3 6778448 6778857 -211258301 + L2 LINE L2 2812 3210 -62 1360 131 57 4 chr3 6779733 6779977 -211257181 - Tigger2 DNA MER2_type 0 2718 2462 3827 108 49 88 chr3 6780020 6780794 -211256364 - Tigger2 DNA MER2_type -1974 744 1 394 259 86 123 chr3 6782675 6783080 -211254078 + L1M2 LINE L1 740 1129 -5720 2142 114 10 0 chr3 6783521 6783818 -211253340 - AluSx SINE Alu -12 300 1 1840 154 3 28 chr3 6783843 6784162 -211252996 - AluJo SINE Alu -1 311 1 2075 135 3 0 chr3 6785003 6785300 -211251858 - AluSx SINE Alu -14 298 1 282 326 122 7 chr3 6786357 6786504 -211250654 - MIR3 SINE MIR -21 187 24 329 241 169 42 chr3 6786590 6786756 -211250402 + MLT1H1 LTR MaLR 49 235 -320 1373 80 6 6 chr3 6786760 6786936 -211250222 + AluSp SINE Alu 1 176 -137 207 0 0 0 chr3 6786940 6786963 -211250195 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2301 115 0 0 chr3 6787057 6787369 -211249789 - AluSx SINE Alu 0 312 1 267 196 0 0 chr3 6787379 6787430 -211249728 + MLT1H1 LTR MaLR 430 480 -75 832 243 111 98 chr3 6787707 6787775 -211249383 - MLT1G1 LTR MaLR 0 595 529 733 124 83 0 chr3 6787775 6787896 -211249262 - FLAM_C SINE Alu -2 131 1 832 243 111 98 chr3 6787896 6788411 -211248747 - MLT1G1 LTR MaLR -66 529 4 233 263 38 100 chr3 6790516 6790676 -211246482 + MIR SINE MIR 100 249 -13 * 442 273 180 3 chr3 6790658 6790831 -211246327 - MIR SINE MIR -49 213 19 2300 77 0 0 chr3 6790951 6791224 -211245934 + AluSc SINE Alu 25 297 -12 5276 29 0 0 chr3 6792002 6792615 -211244543 + L1PA3 LINE L1 5540 6152 -3 613 117 19 19 chr3 6792922 6793025 -211244133 - U13 snRNA snRNA -1 103 1 2229 122 0 0 chr3 6793455 6793750 -211243408 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr3 6793948 6793972 -211243186 + (A)n Simple_repeat Simple_repeat 1 24 0 651 90 34 0 chr3 6794367 6794456 -211242702 - FLAM_C SINE Alu -26 117 26 356 317 96 72 chr3 6796208 6796709 -211240449 + L1MC4a LINE L1 4810 5322 -824 1072 228 153 50 chr3 6796740 6797197 -211239961 + L1MC4a LINE L1 5437 5940 -1868 1820 175 6 19 chr3 6797295 6797609 -211239549 + AluJb SINE Alu 1 310 -2 273 253 82 123 chr3 6798532 6798678 -211238480 + L2 LINE L2 3133 3272 0 297 140 40 0 chr3 6800203 6800253 -211236905 + FLAM SINE Alu 78 129 -4 207 383 103 3 chr3 6800555 6800845 -211236313 + L2 LINE L2 2331 2649 -665 1891 149 20 0 chr3 6800869 6801165 -211235993 - AluJb SINE Alu -10 302 1 225 350 137 38 chr3 6801384 6801698 -211235460 + L2 LINE L2 2928 3272 0 27 62 0 0 chr3 6802033 6802081 -211235077 + AT_rich Low_complexity Low_complexity 1 48 0 1589 187 32 18 chr3 6802261 6802539 -211234619 + AluJo SINE Alu 1 282 -30 398 270 22 58 chr3 6802556 6802693 -211234465 - MER5A DNA MER1_type -49 140 9 208 234 0 43 chr3 6802688 6802735 -211234423 - L3 LINE CR1 -17 1560 1516 * 283 274 53 32 chr3 6802737 6802832 -211234326 + MER5A DNA MER1_type 74 170 -19 194 311 66 57 chr3 6802738 6802860 -211234298 - MER5A DNA MER1_type -63 126 4 * 2518 211 29 49 chr3 6802942 6803491 -211233667 + MLT1F LTR MaLR 5 542 0 587 288 27 68 chr3 6804871 6805053 -211232105 + MIR SINE MIR 14 187 -75 2174 111 16 7 chr3 6805053 6805360 -211231798 + AluSx SINE Alu 1 310 -2 587 288 27 68 chr3 6805360 6805399 -211231759 + MIR SINE MIR 187 226 -36 813 170 0 15 chr3 6806230 6806365 -211230793 + FLAM_C SINE Alu 1 133 0 483 281 98 41 chr3 6806700 6807188 -211229970 + L1M4 LINE L1 4487 5002 -1144 1866 117 38 0 chr3 6807308 6807574 -211229584 + AluSq SINE Alu 1 276 -37 5862 89 11 39 chr3 6807619 6808497 -211228661 + L1PA14 LINE L1 5308 6161 0 573 189 53 95 chr3 6808678 6808703 -211228455 + MER58B DNA MER1_type 180 204 -2216 2069 142 0 13 chr3 6808703 6809012 -211228146 + AluSx SINE Alu 2 306 -6 573 189 53 95 chr3 6809012 6809155 -211228003 + MER58B DNA MER1_type 204 341 0 1393 242 79 12 chr3 6809196 6809673 -211227485 + MLT1E LTR MaLR 55 593 0 1926 120 11 14 chr3 6809789 6810152 -211227006 + AluSx SINE Alu 2 363 0 622 252 68 68 chr3 6810199 6810427 -211226731 + MLT1L LTR MaLR 327 557 -58 917 229 88 5 chr3 6810427 6810632 -211226526 + MER58A DNA MER1_type 2 223 -1 622 252 68 68 chr3 6810632 6810681 -211226477 + MLT1L LTR MaLR 556 604 -11 2009 171 16 30 chr3 6810751 6811119 -211226039 - MLT1A1 LTR MaLR -2 363 1 1801 205 123 30 chr3 6811146 6811643 -211225515 - L1ME3A LINE L1 -10 6160 5618 2275 102 0 3 chr3 6811755 6812050 -211225108 + AluSx SINE Alu 1 294 -18 1920 140 48 0 chr3 6812059 6812352 -211224806 + AluSx SINE Alu 1 307 -5 210 143 0 0 chr3 6812352 6812387 -211224771 + (GA)n Simple_repeat Simple_repeat 1 35 0 288 111 0 0 chr3 6813281 6813326 -211223832 + (GA)n Simple_repeat Simple_repeat 2 46 0 439 280 21 21 chr3 6814029 6814172 -211222986 - MIR SINE MIR -82 180 38 618 163 162 23 chr3 6814919 6815078 -211222080 - MER58C DNA MER1_type 0 215 31 1705 136 41 14 chr3 6815480 6815774 -211221384 - AluJb SINE Alu -10 302 1 2191 93 21 0 chr3 6815932 6816212 -211220946 + AluSc SINE Alu 8 293 -16 1196 164 0 29 chr3 6816957 6817165 -211219993 + AluJo SINE Alu 83 284 -28 441 0 0 0 chr3 6817169 6817218 -211219940 + (GA)n Simple_repeat Simple_repeat 2 50 0 29 60 0 0 chr3 6817242 6817292 -211219866 + AT_rich Low_complexity Low_complexity 1 50 0 313 149 27 54 chr3 6817647 6817721 -211219437 - MER116 DNA Mariner 0 80 9 630 214 0 0 chr3 6818026 6818129 -211219029 - FLAM_A SINE Alu -36 106 4 343 259 37 44 chr3 6818217 6818236 -211218922 - MIR SINE MIR 0 262 244 1294 160 173 30 chr3 6818236 6818536 -211218622 + MER2 DNA MER2_type 2 344 0 343 259 37 44 chr3 6818536 6818651 -211218507 - MIR SINE MIR -18 244 129 233 296 68 0 chr3 6818887 6818975 -211218183 + MIR SINE MIR 84 177 -85 1880 170 0 3 chr3 6820020 6820331 -211216827 + AluJb SINE Alu 1 310 -2 254 288 0 0 chr3 6821098 6821164 -211215994 + (TA)n Simple_repeat Simple_repeat 1 66 0 1721 169 10 23 chr3 6821177 6821485 -211215673 - AluJo SINE Alu -8 304 1 214 313 40 30 chr3 6822348 6822447 -211214711 - MIR SINE MIR -64 144 45 472 291 86 29 chr3 6822959 6823134 -211214024 + MIR3 SINE MIR 16 200 -8 282 287 21 11 chr3 6823389 6823483 -211213675 - MLT1K LTR MaLR -36 552 458 257 270 108 0 chr3 6823628 6823739 -211213419 - MLT1L LTR MaLR -310 305 183 227 241 37 0 chr3 6823778 6823832 -211213326 - MLT1L LTR MaLR -418 197 142 195 42 0 0 chr3 6824019 6824043 -211213115 + (GAATG)n Simple_repeat Simple_repeat 2 25 0 182 246 311 16 chr3 6824871 6824932 -211212226 - L2 LINE L2 -87 3185 3107 1985 38 0 0 chr3 6825049 6825288 -211211870 - L1P LINE L1 -1626 4520 4282 242 303 53 13 chr3 6825332 6825408 -211211750 - L2 LINE L2 -200 3072 2994 2020 135 7 0 chr3 6826766 6827070 -211210088 + AluSx SINE Alu 5 310 -2 2078 117 85 70 chr3 6827364 6827403 -211209755 - MSTA LTR MaLR 0 428 391 2268 103 3 3 chr3 6827403 6827704 -211209454 + AluSx SINE Alu 1 301 -11 2078 117 85 70 chr3 6827704 6827738 -211209420 - MSTA LTR MaLR -37 391 359 2104 131 0 3 chr3 6827738 6828028 -211209130 + AluSx SINE Alu 1 289 -23 2078 117 85 70 chr3 6828028 6828365 -211208793 - MSTA LTR MaLR -69 359 11 856 257 10 10 chr3 6829237 6829443 -211207715 - MLT1A1 LTR MaLR 0 365 160 2224 121 0 0 chr3 6829463 6829761 -211207397 - AluSx SINE Alu -14 298 1 448 52 0 17 chr3 6829761 6829819 -211207339 - MSTC LTR MaLR -371 57 1 2566 115 54 79 chr3 6829952 6830228 -211206930 - MLT1C LTR MaLR 0 467 207 1549 178 3 53 chr3 6830228 6830549 -211206609 - AluJo SINE Alu -7 305 1 2566 115 54 79 chr3 6830549 6830751 -211206407 - MLT1C LTR MaLR -260 207 1 43863 32 21 1 chr3 6830963 6836996 -211200162 + L1HS LINE L1 1 6155 0 24 0 0 0 chr3 6836996 6837020 -211200138 + AT_rich Low_complexity Low_complexity 1 24 0 433 246 84 26 chr3 6837072 6837226 -211199932 - MIR3 SINE MIR -1 207 37 511 254 89 78 chr3 6837523 6838129 -211199029 + L1MC4 LINE L1 7229 7827 -215 477 137 0 0 chr3 6838129 6838202 -211198956 + L1PB4 LINE L1 6070 6142 -14 511 254 89 78 chr3 6838202 6838214 -211198944 + L1MC4 LINE L1 7827 7837 -205 855 172 0 0 chr3 6838214 6838342 -211198816 + FLAM_C SINE Alu 1 128 -5 511 254 89 78 chr3 6838342 6838506 -211198652 + L1MC4 LINE L1 7837 8037 -5 279 0 0 0 chr3 6838596 6838627 -211198531 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2375 101 0 3 chr3 6838637 6838945 -211198213 - AluSg SINE Alu -3 307 1 423 249 26 74 chr3 6839075 6839264 -211197894 + L1MC4a LINE L1 5750 5929 -1879 2616 189 37 2 chr3 6839332 6839851 -211197307 + L1MB7 LINE L1 4012 4548 -1598 863 123 23 8 chr3 6839857 6839987 -211197171 - FLAM_C SINE Alu -11 132 1 4326 183 56 46 chr3 6839988 6841621 -211195537 + L1MB7 LINE L1 4540 6179 -5 360 0 0 0 chr3 6842193 6842233 -211194925 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 97 0 0 chr3 6842233 6842264 -211194894 + (GA)n Simple_repeat Simple_repeat 2 32 0 491 208 196 23 chr3 6842879 6843052 -211194106 - MLT1H LTR MaLR -1 548 346 2173 109 10 0 chr3 6843177 6843480 -211193678 - AluY SINE Alu -5 306 1 2482 218 25 25 chr3 6844169 6844476 -211192682 - L1MB8 LINE L1 -7 6171 5862 1980 127 39 0 chr3 6844476 6844760 -211192398 - AluJb SINE Alu -17 295 1 2482 218 25 25 chr3 6844760 6845061 -211192097 - L1MB8 LINE L1 -315 5863 5563 1545 241 129 33 chr3 6845912 6846463 -211190695 + L1MC4 LINE L1 7160 7763 -279 788 194 0 15 chr3 6846470 6846604 -211190554 + FLAM_C SINE Alu 2 133 0 391 208 132 0 chr3 6846746 6846876 -211190282 + L1MD3 LINE L1 7883 8042 0 1471 141 53 46 chr3 6846892 6847176 -211189982 + AluJb SINE Alu 1 286 -26 270 115 0 0 chr3 6847176 6847228 -211189930 + (CATA)n Simple_repeat Simple_repeat 4 55 0 651 263 26 52 chr3 6847238 6847470 -211189688 + L1ME3 LINE L1 5936 6161 -1 2338 97 0 0 chr3 6847883 6848182 -211188976 + AluSc SINE Alu 1 299 -10 180 111 0 0 chr3 6848292 6848319 -211188839 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 606 174 147 0 chr3 6848447 6848556 -211188602 + FLAM_A SINE Alu 1 125 -8 693 258 32 81 chr3 6848616 6848864 -211188294 + MLT1J LTR MaLR 236 471 -40 2325 161 45 7 chr3 6848956 6849398 -211187760 + L1MB3 LINE L1 5725 6183 0 38 0 0 0 chr3 6849398 6849436 -211187722 + AT_rich Low_complexity Low_complexity 1 38 0 2135 134 0 0 chr3 6849442 6849748 -211187410 + AluSx SINE Alu 1 306 -6 1123 261 90 23 chr3 6849756 6850321 -211186837 + L2 LINE L2 2712 3311 -2 292 293 116 56 chr3 6851227 6851459 -211185699 - L2 LINE L2 -882 2432 2187 784 311 91 40 chr3 6851508 6852152 -211185006 + L2 LINE L2 2606 3280 -33 27 62 0 0 chr3 6852165 6852213 -211184945 + AT_rich Low_complexity Low_complexity 1 48 0 544 328 76 4 chr3 6852303 6852565 -211184593 - L2 LINE L2 -1163 2151 1871 719 234 224 66 chr3 6852686 6852848 -211184310 - MLT1H LTR MaLR 0 542 407 897 272 9 9 chr3 6852848 6853072 -211184086 - MER58A DNA MER1_type 0 224 1 719 234 224 66 chr3 6853072 6853350 -211183808 - MLT1H LTR MaLR -135 407 32 2381 82 0 22 chr3 6853525 6853840 -211183318 + AluSq SINE Alu 1 308 -5 2237 130 0 9 chr3 6854448 6854763 -211182395 + AluSq SINE Alu 1 312 -1 1009 172 18 0 chr3 6854776 6854939 -211182219 + FAM SINE Alu 1 166 -9 910 164 0 8 chr3 6855185 6855319 -211181839 + FLAM_A SINE Alu 1 133 0 1817 158 3 3 chr3 6855517 6855808 -211181350 + AluJb SINE Alu 1 291 -21 1867 315 62 27 chr3 6855822 6857456 -211179702 + L1M4 LINE L1 2938 4629 -1517 507 202 0 0 chr3 6857461 6857585 -211179573 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 24 53 0 0 chr3 6857593 6857631 -211179527 + AT_rich Low_complexity Low_complexity 1 38 0 276 159 57 0 chr3 6857634 6857722 -211179436 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 261 203 203 0 chr3 6857789 6857863 -211179295 - L1MC4 LINE L1 -1340 6702 6614 317 343 79 6 chr3 6857892 6858070 -211179088 + L1M4 LINE L1 4672 4862 -1284 1322 186 76 10 chr3 6858070 6858361 -211178797 - L1MC4 LINE L1 -2150 5658 5349 1096 215 56 53 chr3 6858366 6858724 -211178434 - L1ME2 LINE L1 0 6164 5806 3842 229 100 72 chr3 6858770 6859851 -211177307 + L1MC4 LINE L1 6502 7551 -491 1998 127 7 13 chr3 6859851 6860151 -211177007 + AluJb SINE Alu 1 298 -14 3842 229 100 72 chr3 6860151 6860351 -211176807 + L1MC4 LINE L1 7551 7744 -298 2305 65 41 0 chr3 6860351 6860641 -211176517 - AluY SINE Alu -9 302 1 3842 229 100 72 chr3 6860641 6860857 -211176301 + L1MC4 LINE L1 7744 8042 0 1222 149 159 62 chr3 6860864 6861140 -211176018 - AluJo SINE Alu -9 303 1 572 249 60 55 chr3 6861379 6861580 -211175578 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6861620 6861667 -211175491 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 313 261 153 51 chr3 6862049 6862206 -211174952 - MER5A DNA MER1_type 0 189 17 1700 159 10 20 chr3 6862554 6862849 -211174309 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6862893 6862991 -211174167 + (TG)n Simple_repeat Simple_repeat 2 97 0 419 299 25 25 chr3 6863139 6863296 -211173862 - MIR SINE MIR -1 261 105 251 246 65 58 chr3 6863402 6863540 -211173618 - L2 LINE L2 -4 3309 3171 1563 186 17 7 chr3 6863545 6863846 -211173312 + AluJo SINE Alu 1 304 -8 214 292 258 0 chr3 6863954 6864043 -211173115 + L2 LINE L2 3201 3312 -1 450 200 51 131 chr3 6864284 6864459 -211172699 + MER103 DNA DNA 3 163 -3 548 257 138 0 chr3 6864503 6864655 -211172503 - MER96 DNA MER1_type 0 175 3 2059 150 0 10 chr3 6864999 6865313 -211171845 - AluSx SINE Alu -1 311 1 192 254 153 0 chr3 6865362 6865421 -211171737 + L2 LINE L2 3246 3313 0 2102 101 4 0 chr3 6865776 6866053 -211171105 - AluSx SINE Alu -2 310 33 1614 46 10 15 chr3 6866098 6866295 -211170863 - MER107 DNA MER1_type 0 197 2 2357 84 0 0 chr3 6866373 6866669 -211170489 - AluSx SINE Alu -16 296 1 705 324 107 9 chr3 6868168 6868608 -211168550 + L2 LINE L2 2797 3287 -26 1637 202 56 11 chr3 6868608 6868965 -211168193 + MLT1A2 LTR MaLR 1 373 -1 705 324 107 9 chr3 6868965 6868993 -211168165 + L2 LINE L2 3287 3311 -2 271 116 23 0 chr3 6869388 6869431 -211167727 - MER4E LTR ERV1 -96 670 627 2339 90 65 3 chr3 6869448 6869769 -211167389 - L1PB1 LINE L1 -1 6150 5810 459 281 31 10 chr3 6870080 6870247 -211166911 - MIR SINE MIR -2 260 91 2311 113 0 0 chr3 6870259 6870561 -211166597 + AluSx SINE Alu 1 302 -10 218 207 17 52 chr3 6870837 6870895 -211166263 + L2 LINE L2 3217 3272 0 405 231 208 31 chr3 6871821 6871951 -211165207 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6872098 6872137 -211165021 + (TG)n Simple_repeat Simple_repeat 1 39 0 559 315 88 14 chr3 6872312 6872664 -211164494 + L1ME2 LINE L1 23 400 -6023 1816 248 60 95 chr3 6872985 6874004 -211163154 + L1ME2 LINE L1 1114 2167 -4774 2404 86 0 3 chr3 6874004 6874308 -211162850 + AluSg SINE Alu 1 303 -7 1816 248 60 95 chr3 6874308 6874485 -211162673 + L1ME2 LINE L1 2167 2349 -4592 2229 118 7 0 chr3 6874485 6874790 -211162368 + AluSx SINE Alu 1 307 -5 2432 99 0 0 chr3 6874790 6875103 -211162055 + AluSp SINE Alu 1 313 0 1816 248 60 95 chr3 6875103 6875397 -211161761 + L1ME2 LINE L1 2348 2651 -4290 921 257 5 0 chr3 6875397 6875584 -211161574 + MER5A DNA MER1_type 2 189 0 1816 248 60 95 chr3 6875584 6875669 -211161489 + L1ME2 LINE L1 2651 2737 -4204 1919 163 0 3 chr3 6875669 6875982 -211161176 + AluSx SINE Alu 1 312 0 875 159 0 0 chr3 6875992 6876118 -211161040 + FLAM_C SINE Alu 1 126 -7 1816 248 60 95 chr3 6876118 6876352 -211160806 + L1ME2 LINE L1 2746 2987 -3954 1669 157 82 0 chr3 6876352 6876632 -211160526 + AluJo SINE Alu 1 303 -9 1816 248 60 95 chr3 6876632 6876851 -211160307 + L1ME2 LINE L1 2987 3212 -3729 2332 112 3 0 chr3 6876851 6877163 -211159995 + AluSp SINE Alu 1 313 0 1816 248 60 95 chr3 6877163 6877210 -211159948 + L1ME2 LINE L1 3212 3259 -3682 1615 194 3 46 chr3 6877210 6877535 -211159623 + AluJo SINE Alu 1 311 -1 1816 248 60 95 chr3 6877535 6877809 -211159349 + L1ME2 LINE L1 3259 3569 -3372 364 191 4 2 chr3 6877811 6878068 -211159090 + AluJo SINE Alu 1 300 -2 567 180 9 70 chr3 6878108 6878274 -211158884 + L1M3 LINE L1 5423 5573 -610 186 43 0 0 chr3 6878708 6878731 -211158427 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1864 198 21 5 chr3 6878731 6879105 -211158053 + L1MD2 LINE L1 5556 5935 -307 776 158 23 23 chr3 6879124 6879257 -211157901 - AluJo SINE Alu -178 134 2 1891 189 28 46 chr3 6879258 6879665 -211157493 + L1MD2 LINE L1 5922 6322 -37 1752 171 7 11 chr3 6879665 6879951 -211157207 - AluJb SINE Alu -27 285 1 1891 189 28 46 chr3 6879951 6879976 -211157182 + L1MD2 LINE L1 6322 6346 -13 579 257 19 10 chr3 6879965 6880171 -211156987 + L1ME2 LINE L1 3619 3826 -3115 * 41234 67 5 7 chr3 6880191 6886348 -211150810 + L1PA4 LINE L1 11 6155 0 1400 279 95 2 chr3 6886354 6886932 -211150226 + L1ME2 LINE L1 3824 4455 -2486 3465 234 73 29 chr3 6886938 6887441 -211149717 + L1ME2 LINE L1 4940 5419 -1540 1858 114 42 0 chr3 6887441 6887705 -211149453 - AluSq SINE Alu -21 292 18 3465 234 73 29 chr3 6887705 6889134 -211148024 + L1ME2 LINE L1 5419 6959 0 1198 121 0 0 chr3 6889380 6889546 -211147612 - AluSg/x SINE Alu -9 303 138 415 268 141 0 chr3 6889772 6889914 -211147244 + MIR3 SINE MIR 39 200 -8 2016 146 0 3 chr3 6890098 6890393 -211146765 + AluSx SINE Alu 1 294 -18 195 283 233 33 chr3 6890514 6890634 -211146524 - L2 LINE L2 -4 3268 3125 642 233 91 6 chr3 6890671 6890847 -211146311 + MER91A DNA MER1_type 4 194 -2 346 265 81 70 chr3 6890966 6891232 -211145926 + L2 LINE L2 2782 3053 -219 1013 198 40 0 chr3 6891232 6891434 -211145724 - AluJb SINE Alu -16 296 87 279 252 23 118 chr3 6891468 6891730 -211145428 + L2 LINE L2 3077 3313 0 22 35 0 0 chr3 6891816 6891845 -211145313 + AT_rich Low_complexity Low_complexity 1 29 0 33 0 0 0 chr3 6892462 6892495 -211144663 + AT_rich Low_complexity Low_complexity 1 33 0 329 244 47 0 chr3 6892525 6892611 -211144547 - L1MC5 LINE L1 -75 7886 7797 2132 124 0 16 chr3 6892734 6893048 -211144110 - AluSx SINE Alu -2 310 2 23 54 0 0 chr3 6893048 6893085 -211144073 + AT_rich Low_complexity Low_complexity 1 37 0 278 330 144 0 chr3 6893128 6893301 -211143857 + MIR SINE MIR 35 232 -30 295 265 80 8 chr3 6893645 6893763 -211143395 - MIR SINE MIR -56 152 24 414 273 23 23 chr3 6894555 6894687 -211142471 - MIR SINE MIR -117 145 14 270 176 74 44 chr3 6895208 6895311 -211141847 - MIR SINE MIR -61 147 63 189 315 81 54 chr3 6895464 6895575 -211141583 + L2 LINE L2 3150 3263 -9 594 220 91 102 chr3 6895579 6895714 -211141444 - MIR SINE MIR 0 262 130 1728 129 70 22 chr3 6895714 6895985 -211141173 - AluJo SINE Alu -28 284 1 594 220 91 102 chr3 6895985 6896113 -211141045 - MIR SINE MIR -132 130 2 824 178 0 30 chr3 6897186 6897321 -211139837 - FLAM_C SINE Alu -2 131 1 740 225 99 31 chr3 6897351 6897573 -211139585 - MIR SINE MIR -20 242 6 505 225 0 45 chr3 6897626 6897737 -211139421 - L2 LINE L2 0 3313 3208 230 238 0 165 chr3 6897642 6897806 -211139352 - MIR SINE MIR -10 252 116 * 474 300 0 0 chr3 6897871 6897981 -211139177 - L2 LINE L2 -10 3262 3153 823 164 7 26 chr3 6898245 6898397 -211138761 + AluJb SINE Alu 140 288 -24 306 291 74 3 chr3 6898416 6898531 -211138627 + MIR3 SINE MIR 75 194 -54 384 152 15 0 chr3 6898757 6898823 -211138335 + L1MEc LINE L1 37 103 -6293 * 414 265 8 17 chr3 6898822 6898939 -211138219 + L1MEc LINE L1 706 821 -5575 644 203 0 31 chr3 6898953 6899081 -211138077 + L2 LINE L2 3190 3313 0 644 221 177 6 chr3 6899754 6899935 -211137223 + MIR SINE MIR 14 225 -37 391 290 60 0 chr3 6900003 6900103 -211137055 + MIR SINE MIR 39 144 -64 368 270 34 0 chr3 6900106 6900195 -211136963 + L2 LINE L2 3195 3286 -27 886 172 5 106 chr3 6900206 6900283 -211136875 - MER45A DNA AcHobo -1403 178 95 2356 85 3 0 chr3 6900283 6900589 -211136569 + AluSg SINE Alu 1 307 -3 886 172 5 106 chr3 6900589 6900603 -211136555 - MER45A DNA AcHobo -1486 95 81 2162 106 7 3 chr3 6900603 6900906 -211136252 + AluSp SINE Alu 1 304 -9 886 172 5 106 chr3 6900906 6901011 -211136147 - MER45A DNA AcHobo -1500 81 1 300 289 26 26 chr3 6901011 6901125 -211136033 + MIR SINE MIR 149 262 0 204 225 99 84 chr3 6901123 6901194 -211135964 - MIR SINE MIR -66 196 125 * 916 98 0 0 chr3 6901210 6901333 -211135825 + FLAM_C SINE Alu 1 123 -20 361 281 114 23 chr3 6901795 6902052 -211135106 + L2 LINE L2 2774 3052 -261 879 134 0 0 chr3 6902053 6902180 -211134978 + FLAM_C SINE Alu 1 127 -16 226 358 0 0 chr3 6902383 6902450 -211134708 + L2 LINE L2 3204 3270 -2 220 311 68 0 chr3 6902459 6902533 -211134625 + MIR SINE MIR 75 153 -55 2110 107 0 0 chr3 6902545 6902834 -211134324 - AluSx SINE Alu -6 306 18 240 209 0 0 chr3 6902887 6902930 -211134228 - L2 LINE L2 -19 3294 3252 2017 144 0 0 chr3 6903155 6903467 -211133691 + AluJb SINE Alu 1 312 0 782 154 0 29 chr3 6904031 6904167 -211132991 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 6904245 6904552 -211132606 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 6904557 6904579 -211132579 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 6904689 6904977 -211132181 + AluSx SINE Alu 1 296 -16 1962 144 100 19 chr3 6905246 6905607 -211131551 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 6905699 6905818 -211131340 + L2 LINE L2 3173 3294 -19 1971 98 41 10 chr3 6905909 6906204 -211130954 - AluSg SINE Alu -6 304 1 384 234 36 7 chr3 6906283 6906420 -211130738 + L1MC4 LINE L1 7902 8042 0 1213 149 160 62 chr3 6906428 6906703 -211130455 - AluJo SINE Alu 0 302 1 605 249 60 55 chr3 6906942 6907143 -211130015 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6907183 6907230 -211129928 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 328 261 153 51 chr3 6907612 6907769 -211129389 - MER5A DNA MER1_type 0 189 17 1606 159 10 20 chr3 6908117 6908412 -211128746 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6908456 6908554 -211128604 + (TG)n Simple_repeat Simple_repeat 2 97 0 441 294 31 25 chr3 6908702 6908862 -211128296 - MIR SINE MIR -1 261 101 263 246 65 58 chr3 6908965 6909103 -211128055 - L2 LINE L2 -4 3309 3171 1475 186 17 7 chr3 6909108 6909409 -211127749 + AluJo SINE Alu 1 304 -8 224 292 258 0 chr3 6909517 6909606 -211127552 + L2 LINE L2 3201 3312 -1 422 200 51 131 chr3 6909847 6910022 -211127136 + MER103 DNA DNA 3 163 -3 512 257 138 0 chr3 6910066 6910218 -211126940 - MER96 DNA MER1_type 0 175 3 1960 150 0 10 chr3 6910562 6910876 -211126282 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6910925 6910984 -211126174 + L2 LINE L2 3246 3313 0 2006 101 4 0 chr3 6911339 6911616 -211125542 - AluSx SINE Alu -2 310 33 1537 46 10 15 chr3 6911661 6911858 -211125300 - MER107 DNA MER1_type 0 197 2 2250 84 0 0 chr3 6911936 6912232 -211124926 - AluSx SINE Alu -16 296 1 743 324 107 9 chr3 6913731 6914171 -211122987 + L2 LINE L2 2797 3287 -26 1540 202 56 11 chr3 6914171 6914528 -211122630 + MLT1A2 LTR MaLR 1 373 -1 743 324 107 9 chr3 6914528 6914556 -211122602 + L2 LINE L2 3287 3311 -2 279 116 23 0 chr3 6914951 6914994 -211122164 - MER4E LTR ERV1 -96 670 627 2240 89 0 3 chr3 6915011 6915315 -211121843 - L1PB1 LINE L1 -1 6150 5848 483 281 31 10 chr3 6915643 6915810 -211121348 - MIR SINE MIR -2 260 91 2198 113 0 0 chr3 6915822 6916124 -211121034 + AluSx SINE Alu 1 302 -10 224 207 17 52 chr3 6916400 6916458 -211120700 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6917384 6917514 -211119644 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6917661 6917700 -211119458 + (TG)n Simple_repeat Simple_repeat 1 39 0 505 307 83 17 chr3 6917926 6918226 -211118932 + L1MCc LINE L1 81 400 -6023 1564 248 63 99 chr3 6918547 6919566 -211117592 + L1MCc LINE L1 1114 2167 -4774 2292 86 0 3 chr3 6919566 6919870 -211117288 + AluSg SINE Alu 1 303 -7 1564 248 63 99 chr3 6919870 6920047 -211117111 + L1MCc LINE L1 2167 2349 -4592 2114 118 7 0 chr3 6920047 6920352 -211116806 + AluSx SINE Alu 1 307 -5 2319 99 0 0 chr3 6920352 6920665 -211116493 + AluSp SINE Alu 1 313 0 1564 248 63 99 chr3 6920665 6920959 -211116199 + L1MCc LINE L1 2348 2651 -4290 839 257 5 0 chr3 6920959 6921146 -211116012 + MER5A DNA MER1_type 2 189 0 1564 248 63 99 chr3 6921146 6921231 -211115927 + L1MCc LINE L1 2651 2737 -4204 1816 163 0 3 chr3 6921231 6921544 -211115614 + AluSx SINE Alu 1 312 0 827 159 0 0 chr3 6921554 6921680 -211115478 + FLAM_C SINE Alu 1 126 -7 1564 248 63 99 chr3 6921680 6921914 -211115244 + L1MCc LINE L1 2746 2987 -3954 1572 157 82 0 chr3 6921914 6922194 -211114964 + AluJo SINE Alu 1 303 -9 1564 248 63 99 chr3 6922194 6922413 -211114745 + L1MCc LINE L1 2987 3257 -3684 2221 107 3 0 chr3 6922413 6922721 -211114437 + AluSp SINE Alu 1 309 -4 1564 248 63 99 chr3 6922721 6922761 -211114397 + L1MCc LINE L1 3257 3297 -3644 577 205 9 18 chr3 6922774 6922886 -211114272 + FLAM_C SINE Alu 3 113 -30 185 0 40 0 chr3 6924718 6924743 -211112415 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chr3 6924742 6924775 -211112383 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 234 9 72 chr3 6926071 6926182 -211110976 + L1ME LINE L1 5725 5828 -293 318 167 0 0 chr3 6927387 6927447 -211109711 + (TG)n Simple_repeat Simple_repeat 2 61 0 33 0 0 0 chr3 6928468 6928501 -211108657 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 6929323 6929349 -211107809 + AT_rich Low_complexity Low_complexity 1 26 0 390 229 0 0 chr3 6930915 6930998 -211106160 - MIR SINE MIR -101 161 79 791 261 81 5 chr3 6931160 6931382 -211105776 - MIR SINE MIR -22 240 2 208 304 128 16 chr3 6931425 6931550 -211105608 - MIR SINE MIR 0 262 124 363 284 0 0 chr3 6931562 6931643 -211105515 - MIR SINE MIR -63 145 65 316 301 62 9 chr3 6931696 6931809 -211105349 - MIR SINE MIR -54 208 90 2034 109 10 0 chr3 6931999 6932292 -211104866 + AluJb SINE Alu 1 296 -16 183 80 0 0 chr3 6932407 6932432 -211104726 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr3 6933558 6933587 -211103571 + AT_rich Low_complexity Low_complexity 1 29 0 4073 175 32 28 chr3 6933615 6934461 -211102697 + L1MB5 LINE L1 5314 6166 -8 987 148 37 70 chr3 6934473 6934717 -211102441 - L1MC5 LINE L1 -68 7893 7658 2229 87 7 0 chr3 6934809 6935108 -211102050 + AluSg SINE Alu 1 301 -9 1607 171 32 4 chr3 6935226 6935506 -211101652 + AluJo SINE Alu 1 288 -24 1047 285 77 6 chr3 6935571 6935908 -211101250 - L1MC4a LINE L1 -1865 5943 5583 291 242 55 11 chr3 6935955 6936046 -211101112 + L1MC4a LINE L1 5560 5654 -467 33 0 0 0 chr3 6936051 6936084 -211101074 + AT_rich Low_complexity Low_complexity 1 33 0 750 171 0 0 chr3 6936084 6936201 -211100957 - FLAM_C SINE Alu -25 118 2 215 267 0 0 chr3 6936278 6936323 -211100835 + polypurine Low_complexity Low_complexity 4 48 0 306 303 127 42 chr3 6936342 6936507 -211100651 + L1MC4a LINE L1 5755 5933 -1875 514 211 65 16 chr3 6936529 6936652 -211100506 + MIR SINE MIR 110 238 -24 432 230 85 67 chr3 6936700 6936865 -211100293 + L1ME4a LINE L1 5943 6110 -11 268 356 104 0 chr3 6937171 6937286 -211099872 + L2 LINE L2 3146 3272 0 486 254 57 51 chr3 6937299 6937476 -211099682 + MIR SINE MIR 80 257 -5 902 167 88 21 chr3 6937489 6937681 -211099477 + AluJo SINE Alu 87 291 -21 34 24 0 0 chr3 6937682 6937723 -211099435 + AT_rich Low_complexity Low_complexity 1 41 0 291 114 0 0 chr3 6937833 6937877 -211099281 + (CA)n Simple_repeat Simple_repeat 1 44 0 524 243 225 0 chr3 6937929 6938102 -211099056 - MIR SINE MIR -28 234 23 423 290 46 100 chr3 6939561 6939820 -211097338 - L2 LINE L2 0 3272 3028 2000 183 41 31 chr3 6939851 6940267 -211096891 + MLT1C LTR MaLR 44 463 -4 259 263 71 30 chr3 6940270 6940369 -211096789 - L2 LINE L2 -345 2969 2867 2355 49 0 16 chr3 6940965 6941272 -211095886 - AluY SINE Alu -9 302 1 232 136 0 169 chr3 6941324 6941383 -211095775 + MLT1K LTR MaLR 201 249 -339 227 287 90 48 chr3 6991390 6991578 -211045580 - L2 LINE L2 -380 2934 2739 706 172 8 30 chr3 6991742 6991876 -211045282 + FLAM_C SINE Alu 1 131 -12 339 167 0 0 chr3 6991881 6991947 -211045211 + G-rich Low_complexity Low_complexity 4 69 0 1174 138 0 0 chr3 6991989 6992149 -211045009 + (T)n Simple_repeat Simple_repeat 1 160 0 253 391 0 0 chr3 6992331 6992492 -211044666 + T-rich Low_complexity Low_complexity 2 162 0 369 309 119 66 chr3 6994241 6994484 -211042674 + L2 LINE L2 3014 3269 -3 830 271 24 82 chr3 6994659 6995120 -211042038 + MER34 LTR ERV1 1 434 -108 715 124 0 0 chr3 6995142 6995239 -211041919 + FLAM_C SINE Alu 21 117 -26 260 77 0 0 chr3 6995506 6995545 -211041613 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 6995605 6995814 -211041344 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 6996049 6996110 -211041048 - Alu SINE Alu -9 301 241 1492 264 19 16 chr3 6996111 6996479 -211040679 + MER82 DNA MER2_type 212 580 -73 282 80 0 60 chr3 6998915 6998965 -211038193 + Alu SINE Alu 1 47 -261 970 141 19 0 chr3 6998965 6999121 -211038037 + AluSg/x SINE Alu 143 301 -11 375 298 92 26 chr3 6999156 6999384 -211037774 + MIR SINE MIR 14 256 -6 459 273 0 0 chr3 6999517 6999627 -211037531 - MER94 DNA DNA 0 134 25 260 300 186 14 chr3 7000012 7000152 -211037006 - MER117 DNA MER1_type -15 182 19 1090 251 58 69 chr3 7000451 7001027 -211036131 + L2 LINE L2 2760 3306 -7 1718 122 37 10 chr3 7002250 7002546 -211034612 - AluSx SINE Alu -8 304 1 201 362 133 0 chr3 7002671 7002776 -211034382 - L2 LINE L2 -1 3312 3194 293 315 11 0 chr3 7003134 7003226 -211033932 - MIR3 SINE MIR -25 183 91 1484 196 28 11 chr3 7004189 7004475 -211032683 - AluJo SINE Alu -21 291 1 721 282 43 60 chr3 7004571 7004872 -211032286 - L2 LINE L2 -13 3300 3005 531 298 12 6 chr3 7005052 7005220 -211031938 - MIR SINE MIR -22 240 72 198 284 74 53 chr3 7005325 7005420 -211031738 + MIR SINE MIR 70 166 -96 425 339 15 0 chr3 7006093 7006272 -211030886 - MIR SINE MIR -44 218 36 3788 55 13 0 chr3 7006859 7007335 -211029823 - L1PA6 LINE L1 -199 5955 5474 * 6560 55 22 2 chr3 7007334 7008203 -211028955 + L1P LINE L1 3694 4579 -1567 324 324 118 42 chr3 7008385 7008623 -211028535 + HAL1b LINE L1 15 270 -1078 195 298 64 53 chr3 7009161 7009255 -211027903 + MIR3 SINE MIR 111 205 -3 1366 186 13 68 chr3 7009512 7009819 -211027339 + AluJb SINE Alu 1 290 -22 533 264 21 7 chr3 7010152 7010292 -211026866 - MIR SINE MIR -48 214 73 1087 101 0 0 chr3 7010350 7010498 -211026660 - Tigger7 DNA MER2_type -1 2486 2339 341 171 100 0 chr3 7010517 7010587 -211026571 - Tigger7 DNA MER2_type -473 77 1 429 270 162 0 chr3 7010779 7010927 -211026231 + MIR3 SINE MIR 33 204 -4 1878 104 45 3 chr3 7011245 7011534 -211025624 + AluSx SINE Alu 1 301 -11 2072 107 0 7 chr3 7011545 7011834 -211025324 + AluSc SINE Alu 1 287 -22 318 244 145 53 chr3 7011843 7011974 -211025184 + L3 LINE CR1 1206 1348 -229 366 274 35 9 chr3 7011974 7012087 -211025071 + LTR16A1 LTR ERVL 4 119 -338 234 0 0 0 chr3 7012287 7012313 -211024845 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 1994 127 23 10 chr3 7014244 7014552 -211022606 + AluSx SINE Alu 1 312 0 33 25 0 0 chr3 7014552 7014592 -211022566 + AT_rich Low_complexity Low_complexity 1 40 0 290 324 75 0 chr3 7015595 7015740 -211021418 - MIR3 SINE MIR -30 178 24 440 280 213 14 chr3 7016457 7016664 -211020494 - MIR SINE MIR -1 261 14 268 234 0 0 chr3 7016882 7016946 -211020212 - MIR SINE MIR -132 130 67 193 313 205 0 chr3 7016976 7017059 -211020099 - L2 LINE L2 -18 3254 3155 2250 100 0 0 chr3 7017101 7017402 -211019756 - AluSx SINE Alu -11 301 1 427 118 24 0 chr3 7018002 7018087 -211019071 + CT-rich Low_complexity Low_complexity 2 88 0 1710 172 3 3 chr3 7018250 7018546 -211018612 - AluJb SINE Alu -16 296 1 183 217 0 0 chr3 7019052 7019112 -211018046 + GA-rich Low_complexity Low_complexity 2 61 0 1812 142 14 7 chr3 7019197 7019492 -211017666 + AluJb SINE Alu 1 297 -15 382 283 5 43 chr3 7019499 7019683 -211017475 + GA-rich Low_complexity Low_complexity 2 178 0 534 225 113 31 chr3 7019791 7019951 -211017207 + MIR SINE MIR 29 201 -61 1244 136 117 0 chr3 7019956 7020073 -211017085 + MER30 DNA MER1_type 1 103 -127 2385 52 0 0 chr3 7020073 7020362 -211016796 - AluSc SINE Alu -20 289 1 1244 136 117 0 chr3 7020362 7020450 -211016708 + MER30 DNA MER1_type 103 230 0 277 267 0 27 chr3 7020614 7020689 -211016469 - MER94 DNA DNA -61 73 1 418 258 144 6 chr3 7020706 7020873 -211016285 - Charlie8 DNA MER1_type -2136 281 92 230 256 14 145 chr3 7020988 7021195 -211015963 - L2 LINE L2 -92 3180 3001 707 283 0 12 chr3 7021251 7021424 -211015734 - MIR SINE MIR -24 238 68 2050 116 0 0 chr3 7021760 7022044 -211015114 + AluSc SINE Alu 1 284 -25 216 175 175 0 chr3 7022090 7022147 -211015011 - MIR SINE MIR -108 100 34 333 284 129 32 chr3 7022837 7022992 -211014166 - L2 LINE L2 -7 3306 3137 1002 196 23 46 chr3 7023012 7023231 -211013927 - MER20 DNA MER1_type -5 214 1 1563 164 7 14 chr3 7023293 7023579 -211013579 + AluJo SINE Alu 14 297 -15 1040 148 61 13 chr3 7023579 7023809 -211013349 - MER33 DNA MER1_type -24 300 60 336 198 143 11 chr3 7023906 7023997 -211013161 + MER5A DNA MER1_type 4 106 -83 222 224 129 12 chr3 7024144 7024229 -211012929 + MIR SINE MIR 99 193 -69 2006 110 3 3 chr3 7025290 7025581 -211011577 + AluSx SINE Alu 1 291 -21 342 76 0 45 chr3 7025593 7025659 -211011499 + (GGAA)n Simple_repeat Simple_repeat 1 63 0 557 245 182 10 chr3 7025886 7026078 -211011080 + MIR SINE MIR 33 257 -5 336 255 92 10 chr3 7026093 7026191 -211010967 - MIR SINE MIR -155 107 2 275 262 0 0 chr3 7026276 7026337 -211010821 + MLT1K LTR MaLR 5 65 -523 676 260 250 32 chr3 7026357 7026669 -211010489 + MLT1K LTR MaLR 206 585 -3 2138 117 3 0 chr3 7027041 7027349 -211009809 - AluSq SINE Alu -4 309 1 181 200 25 0 chr3 7027426 7027466 -211009692 - L2 LINE L2 -5 3267 3227 2184 153 46 57 chr3 7028109 7028157 -211009001 - L1MB4 LINE L1 0 6180 6133 1599 175 3 3 chr3 7028157 7028442 -211008716 - AluJb SINE Alu -17 295 11 2184 153 46 57 chr3 7028442 7028870 -211008288 - L1MB4 LINE L1 -47 6133 5709 280 231 0 0 chr3 7029052 7029104 -211008054 + 5S rRNA rRNA 1 52 -69 646 208 60 24 chr3 7029368 7029536 -211007622 + MIR SINE MIR 72 245 -17 271 167 111 0 chr3 7029787 7029841 -211007317 + MIR SINE MIR 123 182 -80 1758 149 0 34 chr3 7029976 7030299 -211006859 + AluSx SINE Alu 1 312 0 189 94 0 0 chr3 7030387 7030419 -211006739 + (CAACC)n Simple_repeat Simple_repeat 2 33 0 236 302 15 65 chr3 7031444 7031463 -211005695 - MIR SINE MIR -33 175 157 2208 65 0 29 chr3 7031463 7031769 -211005389 - AluY SINE Alu -14 297 1 236 302 15 65 chr3 7031769 7031887 -211005271 - MIR SINE MIR -51 157 46 2071 110 10 0 chr3 7031907 7032206 -211004952 - AluSq SINE Alu -10 303 2 1564 180 79 75 chr3 7032309 7032758 -211004400 + Charlie1b DNA MER1_type 1 454 -2307 2075 117 0 3 chr3 7032758 7033057 -211004101 - AluSx SINE Alu -14 298 1 1564 180 79 75 chr3 7033057 7033128 -211004030 + Charlie1b DNA MER1_type 454 523 0 1936 117 17 17 chr3 7033177 7033476 -211003682 - AluSx SINE Alu -13 299 1 327 65 0 0 chr3 7033528 7033574 -211003584 + (TTCC)n Simple_repeat Simple_repeat 3 48 0 782 172 0 8 chr3 7033574 7033708 -211003450 - FLAM_C SINE Alu 0 133 1 579 230 182 7 chr3 7033722 7033870 -211003288 - MER5A DNA MER1_type -15 174 1 356 259 61 83 chr3 7034554 7034782 -211002376 - MER102b DNA MER1_type -1 340 118 730 157 0 57 chr3 7034832 7034972 -211002186 + AluJo/FLAM SINE Alu 1 132 -170 2253 99 0 0 chr3 7034972 7035275 -211001883 + AluSx SINE Alu 1 303 -9 521 208 31 6 chr3 7035275 7035418 -211001740 + GA-rich Low_complexity Low_complexity 1 150 -13 1817 111 47 11 chr3 7035418 7035697 -211001461 + AluSx SINE Alu 1 289 -23 521 208 31 6 chr3 7035697 7035712 -211001446 + GA-rich Low_complexity Low_complexity 150 163 0 468 0 0 0 chr3 7035777 7035829 -211001329 + (CA)n Simple_repeat Simple_repeat 2 53 0 2054 106 10 0 chr3 7036170 7036462 -211000696 + AluSq SINE Alu 1 295 -18 1517 179 0 32 chr3 7036615 7036927 -211000231 + AluJo SINE Alu 11 312 0 334 281 47 64 chr3 7037131 7037302 -210999856 + MIR SINE MIR 45 212 -50 435 301 58 13 chr3 7037400 7037556 -210999602 - MIR SINE MIR -39 223 61 1626 177 7 11 chr3 7037655 7037788 -210999370 + AluJo SINE Alu 1 133 -179 2292 61 0 52 chr3 7037788 7038114 -210999044 + AluY SINE Alu 1 309 -2 1626 177 7 11 chr3 7038114 7038262 -210998896 + AluJo SINE Alu 133 281 -31 252 100 0 0 chr3 7038262 7038302 -210998856 + (CA)n Simple_repeat Simple_repeat 1 40 0 1598 153 20 20 chr3 7038312 7038606 -210998552 + AluJb SINE Alu 5 298 -14 186 43 0 0 chr3 7038606 7038629 -210998529 + (TA)n Simple_repeat Simple_repeat 2 24 0 1800 150 0 25 chr3 7038694 7038833 -210998325 + AluSx SINE Alu 1 142 -170 2262 81 3 7 chr3 7038833 7039130 -210998028 + AluSg SINE Alu 2 297 -13 1800 150 0 25 chr3 7039130 7039310 -210997848 + AluSx SINE Alu 142 312 0 231 307 86 57 chr3 7039326 7039466 -210997692 - L2 LINE L2 -2 3311 3168 254 324 102 25 chr3 7039502 7039733 -210997425 - L2 LINE L2 -276 3037 2791 373 217 43 7 chr3 7039740 7039878 -210997280 + (TA)n Simple_repeat Simple_repeat 2 144 0 29 0 0 0 chr3 7039914 7039943 -210997215 + AT_rich Low_complexity Low_complexity 1 29 0 702 75 0 0 chr3 7039972 7040066 -210997092 - L1PA5 LINE L1 0 6154 6061 624 219 14 0 chr3 7040092 7040238 -210996920 - L1MA10 LINE L1 -13 6321 6174 1887 137 14 0 chr3 7040239 7040531 -210996627 + AluJo SINE Alu 1 296 -16 503 259 45 58 chr3 7040531 7040774 -210996384 - L1MD2 LINE L1 -139 6027 5788 268 304 14 109 chr3 7040817 7040955 -210996203 + MIR SINE MIR 32 156 -106 399 293 73 44 chr3 7041626 7041831 -210995327 + MIR SINE MIR 31 241 -21 263 93 23 0 chr3 7041890 7041933 -210995225 + (TG)n Simple_repeat Simple_repeat 2 45 0 874 269 129 6 chr3 7042033 7042367 -210994791 + L3 LINE CR1 1161 1535 -42 360 0 0 0 chr3 7042520 7042560 -210994598 + (T)n Simple_repeat Simple_repeat 1 40 0 359 203 100 144 chr3 7042643 7042914 -210994244 - MLT1K LTR MaLR 0 588 330 1306 194 0 68 chr3 7043043 7043367 -210993791 + AluJo SINE Alu 1 302 -10 1958 126 0 3 chr3 7043369 7043654 -210993504 + AluSx SINE Alu 1 284 -28 222 37 0 0 chr3 7043654 7043681 -210993477 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 592 326 84 45 chr3 7043798 7044317 -210992841 + L2 LINE L2 2684 3260 -12 817 213 38 85 chr3 7045025 7045151 -210992007 + MIR SINE MIR 29 140 -122 1862 122 40 0 chr3 7045151 7045447 -210991711 - AluSx SINE Alu -4 308 1 817 213 38 85 chr3 7045447 7045555 -210991603 + MIR SINE MIR 140 252 -10 274 171 157 14 chr3 7045660 7045730 -210991428 - L2 LINE L2 -5 3308 3229 1993 110 12 95 chr3 7045881 7046228 -210990930 - L1PBa LINE L1 -4936 1927 1618 2105 108 0 29 chr3 7046228 7046542 -210990616 - AluSx SINE Alu -7 305 1 1993 110 12 95 chr3 7046542 7046604 -210990554 - L1PBa LINE L1 -5245 1618 1552 593 338 18 14 chr3 7046822 7047041 -210990117 + MIR SINE MIR 42 261 -1 251 295 67 0 chr3 7047099 7047204 -210989954 + L1ME4a LINE L1 6010 6121 0 1882 124 9 25 chr3 7047379 7047694 -210989464 + AluSx SINE Alu 1 310 -2 278 283 76 0 chr3 7048076 7048168 -210988990 - MLT1K LTR MaLR -280 308 210 292 323 21 0 chr3 7048535 7048628 -210988530 + MIR3 SINE MIR 108 202 -6 206 286 0 0 chr3 7048817 7048866 -210988292 - MIR SINE MIR -55 207 159 2185 166 69 51 chr3 7048866 7049360 -210987798 + MLT1D LTR MaLR 1 503 -2 2214 101 3 7 chr3 7049388 7049695 -210987463 + AluSx SINE Alu 1 306 -6 264 261 59 34 chr3 7049786 7049905 -210987253 - L2 LINE L2 -19 3294 3173 1988 144 100 17 chr3 7049997 7050357 -210986801 + MLT1B LTR MaLR 1 390 0 1993 115 28 0 chr3 7050625 7050913 -210986245 - AluSx SINE Alu -16 296 1 22 0 0 0 chr3 7051023 7051045 -210986113 + AT_rich Low_complexity Low_complexity 1 22 0 1833 153 3 19 chr3 7051050 7051357 -210985801 - AluJb SINE Alu -10 302 1 793 147 0 29 chr3 7051435 7051571 -210985587 + FLAM_C SINE Alu 2 133 0 529 262 66 20 chr3 7051734 7052033 -210985125 - MLT1I LTR MaLR 0 409 61 2626 97 28 14 chr3 7052036 7052397 -210984761 + THE1C LTR MaLR 10 375 0 711 261 96 5 chr3 7052459 7052677 -210984481 - MLT1L LTR MaLR -10 605 368 4731 136 16 6 chr3 7052701 7053405 -210983753 + MER50 LTR ERV1 1 711 -23 1921 136 0 28 chr3 7053455 7053772 -210983386 - AluJb SINE Alu -4 308 1 502 281 75 48 chr3 7053775 7054070 -210983088 - MLT1L LTR MaLR -310 305 3 254 259 111 0 chr3 7054113 7054194 -210982964 - MIR SINE MIR -59 203 114 2060 123 0 3 chr3 7054673 7054974 -210982184 + AluSx SINE Alu 1 300 -12 716 201 0 29 chr3 7055235 7055374 -210981784 + FLAM_C SINE Alu 6 140 -3 457 304 125 18 chr3 7055432 7055656 -210981502 - MIR SINE MIR -12 250 3 333 239 14 34 chr3 7055746 7055852 -210981306 - MIR SINE MIR -92 116 14 480 295 95 20 chr3 7056695 7056895 -210980263 + MIR SINE MIR 47 261 -1 185 108 27 0 chr3 7057194 7057231 -210979927 + (TGG)n Simple_repeat Simple_repeat 3 40 0 649 298 102 80 chr3 7057650 7058090 -210979068 - L2 LINE L2 -9 3263 2814 1873 113 57 0 chr3 7058133 7058416 -210978742 - AluSx SINE Alu -9 303 5 223 316 143 0 chr3 7058873 7058971 -210978187 - L2 LINE L2 -5 3308 3197 578 254 9 111 chr3 7058982 7059103 -210978055 - MIR SINE MIR -48 214 123 1870 136 0 17 chr3 7059103 7059397 -210977761 + AluSx SINE Alu 1 289 -23 578 254 9 111 chr3 7059397 7059492 -210977666 - MIR SINE MIR -139 123 20 818 146 0 8 chr3 7059519 7059642 -210977516 - FLAM_C SINE Alu -16 127 6 1054 267 140 32 chr3 7060145 7060609 -210976549 + MER20B DNA MER1_type 2 515 -268 849 205 21 38 chr3 7060715 7060954 -210976204 + MER20B DNA MER1_type 515 749 -34 2112 104 40 0 chr3 7060957 7061255 -210975903 + AluSx SINE Alu 1 310 -2 326 194 97 0 chr3 7061332 7061404 -210975754 + MER20B DNA MER1_type 207 285 -498 444 111 0 0 chr3 7061420 7061492 -210975666 + Alu SINE Alu 237 308 -2 974 243 46 102 chr3 7061574 7062056 -210975102 - L2 LINE L2 -664 2650 2196 1718 126 0 37 chr3 7062375 7062669 -210974489 + AluJb SINE Alu 12 294 -18 626 283 76 22 chr3 7063440 7063479 -210973679 + MIR SINE MIR 14 49 -213 2257 103 0 0 chr3 7063479 7063790 -210973368 - AluSx SINE Alu -1 311 1 626 283 76 22 chr3 7063790 7063973 -210973185 + MIR SINE MIR 49 248 -14 1510 153 142 54 chr3 7064068 7064421 -210972737 + MLT1B LTR MaLR 1 384 -6 247 356 9 0 chr3 7064579 7064694 -210972464 - L2 LINE L2 -370 2944 2829 1504 253 30 39 chr3 7064864 7065082 -210972076 + LTR16A LTR ERVL 20 234 -216 2064 123 0 0 chr3 7065082 7065375 -210971783 - AluSx SINE Alu -19 293 1 1504 253 30 39 chr3 7065375 7065591 -210971567 + LTR16A LTR ERVL 234 450 0 2117 114 3 0 chr3 7065710 7066007 -210971151 - AluSg SINE Alu -10 300 3 298 342 46 97 chr3 7066232 7066597 -210970561 + L2 LINE L2 2860 3242 -30 3113 173 39 22 chr3 7066597 7066748 -210970410 - MER6A DNA MER2_type -260 605 458 2134 105 3 0 chr3 7066748 7067043 -210970115 + AluSx SINE Alu 1 296 -16 2180 86 0 3 chr3 7067044 7067336 -210969822 + AluSc SINE Alu 1 291 -18 3113 173 39 22 chr3 7067336 7067777 -210969381 - MER6A DNA MER2_type -406 459 1 298 342 46 97 chr3 7067777 7067844 -210969314 + L2 LINE L2 3242 3270 -2 1601 175 14 0 chr3 7067912 7068190 -210968968 + AluJb SINE Alu 1 285 -27 593 27 13 0 chr3 7068190 7068265 -210968893 + (TAGA)n Simple_repeat Simple_repeat 2 77 0 661 250 14 7 chr3 7068358 7068498 -210968660 + Charlie1 DNA MER1_type 1 141 -2620 * 2231 179 35 31 chr3 7068494 7068956 -210968202 + Charlie1 DNA MER1_type 2207 2673 -88 1907 153 0 0 chr3 7068956 7069256 -210967902 + AluSx SINE Alu 1 300 -12 2231 179 35 31 chr3 7069256 7069335 -210967823 + Charlie1 DNA MER1_type 2673 2750 -11 2137 104 0 10 chr3 7069335 7069643 -210967515 + AluSx SINE Alu 1 305 -7 1012 229 162 75 chr3 7069688 7070059 -210967099 - MLT1K LTR MaLR -159 429 27 1349 151 117 30 chr3 7070062 7070327 -210966831 + AluJo SINE Alu 11 298 -14 337 263 150 0 chr3 7071116 7071249 -210965909 + L3 LINE CR1 1272 1424 -153 638 193 25 0 chr3 7071375 7071494 -210965664 + AluJb SINE Alu 1 122 -190 1253 102 43 132 chr3 7071647 7071781 -210965377 + L1MA5A LINE L1 5991 6135 -168 2246 107 0 0 chr3 7071781 7072091 -210965067 - AluSx SINE Alu 0 312 3 1911 121 3 16 chr3 7072093 7072400 -210964758 - AluSg SINE Alu -6 304 2 1253 102 43 132 chr3 7072400 7072445 -210964713 + L1MA5A LINE L1 6136 6183 -120 1965 134 0 0 chr3 7072445 7072735 -210964423 + AluSq SINE Alu 1 290 -23 1253 102 43 132 chr3 7072735 7072878 -210964280 + L1MA5A LINE L1 6183 6301 -2 722 266 28 28 chr3 7074002 7074216 -210962942 - MIR SINE MIR -48 214 1 1022 262 148 10 chr3 7074339 7074763 -210962395 - MLT1J2 LTR MaLR 0 450 1 2267 92 3 10 chr3 7074867 7075181 -210961977 - AluSp SINE Alu 0 313 2 593 181 0 0 chr3 7076260 7076354 -210960804 - AluJb SINE Alu -42 270 177 443 267 0 0 chr3 7076355 7076460 -210960698 - HERVL LTR ERVL -281 5373 5269 1192 253 48 24 chr3 7076524 7076860 -210960298 + ERVL LTR ERVL 3098 3441 -2323 284 250 261 11 chr3 7076949 7077037 -210960121 + MIR SINE MIR 38 147 -61 27 62 0 0 chr3 7077319 7077367 -210959791 + AT_rich Low_complexity Low_complexity 1 48 0 697 318 55 4 chr3 7077842 7078078 -210959080 + MIR SINE MIR 13 260 -2 1395 168 40 37 chr3 7078089 7078386 -210958772 + AluJo SINE Alu 1 298 -14 2029 113 3 3 chr3 7078747 7079039 -210958119 + AluSg SINE Alu 1 292 -18 1012 167 9 79 chr3 7079230 7079457 -210957701 + AluJo SINE Alu 1 211 -101 860 272 158 14 chr3 7079464 7079832 -210957326 + LTR33 LTR ERVL 49 469 -52 2165 115 0 0 chr3 7079846 7080150 -210957008 + AluSx SINE Alu 1 304 -8 2238 148 50 5 chr3 7080160 7080560 -210956598 + L1MC1 LINE L1 5911 6328 -5 328 209 60 11 chr3 7080754 7080844 -210956314 - MLT1J LTR MaLR 0 615 416 2284 80 0 7 chr3 7080856 7081156 -210956002 + AluSx SINE Alu 2 299 -13 435 271 21 14 chr3 7081156 7081300 -210955858 + MIR SINE MIR 118 262 0 1504 106 78 78 chr3 7081941 7082234 -210954924 + AluSx SINE Alu 2 294 -18 802 141 8 0 chr3 7082314 7082442 -210954716 + AluJ SINE Alu 1 129 -173 444 277 98 27 chr3 7082548 7082732 -210954426 - MIR SINE MIR 0 262 66 1613 169 7 23 chr3 7083034 7083336 -210953822 + AluJb SINE Alu 1 297 -15 2064 128 0 10 chr3 7083339 7083651 -210953507 + AluSg SINE Alu 1 309 -1 288 0 0 0 chr3 7083838 7083870 -210953288 + (TA)n Simple_repeat Simple_repeat 1 32 0 280 238 71 0 chr3 7083879 7083963 -210953195 - L1MC4 LINE L1 -1339 6703 6614 234 0 0 0 chr3 7083963 7083989 -210953169 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 378 0 0 0 chr3 7083988 7084030 -210953128 + (TA)n Simple_repeat Simple_repeat 1 42 0 201 74 0 0 chr3 7084532 7084559 -210952599 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 1129 123 6 0 chr3 7084827 7084990 -210952168 + AluJ SINE Alu 135 298 -14 6306 94 47 10 chr3 7086082 7087016 -210950142 - LTR5 LTR ERVK 0 969 1 1845 147 3 7 chr3 7087582 7087874 -210949284 + AluJb SINE Alu 1 291 -21 1399 187 16 50 chr3 7088336 7088657 -210948501 + AluJo SINE Alu 1 310 -2 242 188 83 0 chr3 7089214 7089262 -210947896 + L2 LINE L2 3221 3272 0 941 202 86 73 chr3 7089272 7089294 -210947864 - L1M4 LINE L1 -754 5392 5372 1804 129 3 45 chr3 7089294 7089604 -210947554 - AluSx SINE Alu -12 300 4 941 202 86 73 chr3 7089604 7089775 -210947383 - L1M4 LINE L1 -774 5372 5205 2021 136 13 0 chr3 7089775 7090083 -210947075 - AluSx SINE Alu 0 312 1 941 202 86 73 chr3 7090083 7090260 -210946898 - L1M4 LINE L1 -941 5205 5016 457 152 0 43 chr3 7090306 7090398 -210946760 - AluJ/FRAM SINE Alu -2 310 223 36 23 0 0 chr3 7090581 7090624 -210946534 + AT_rich Low_complexity Low_complexity 1 43 0 774 90 0 0 chr3 7090629 7090729 -210946429 - HY3 scRNA scRNA -1 100 1 534 239 63 63 chr3 7090749 7090862 -210946296 - Charlie7 DNA MER1_type -29 2583 2471 1668 192 13 0 chr3 7090862 7091170 -210945988 - AluJo SINE Alu 0 312 1 534 239 63 63 chr3 7091170 7091489 -210945669 - Charlie7 DNA MER1_type -141 2471 314 352 363 55 31 chr3 7091513 7091838 -210945320 - LTR16C LTR ERVL -10 481 149 2094 109 3 0 chr3 7092823 7093127 -210944031 - AluSx SINE Alu -7 305 1 21 0 0 0 chr3 7093386 7093407 -210943751 + AT_rich Low_complexity Low_complexity 1 21 0 1692 157 7 20 chr3 7094334 7094634 -210942524 + AluSx SINE Alu 1 296 -16 382 296 53 59 chr3 7095333 7095502 -210941656 + MER5A DNA MER1_type 22 189 0 1682 150 10 20 chr3 7095812 7095945 -210941213 + AluJo SINE Alu 1 134 -178 2067 103 0 63 chr3 7095945 7096276 -210940882 + AluSg SINE Alu 1 310 0 1682 150 10 20 chr3 7096276 7096435 -210940723 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7097237 7097259 -210939899 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 7097371 7097459 -210939699 + L2 LINE L2 3221 3308 -5 1752 137 53 0 chr3 7097538 7097822 -210939336 + AluJb SINE Alu 1 299 -13 1248 104 0 0 chr3 7097912 7098085 -210939073 + AluSp SINE Alu 132 304 -9 187 111 0 0 chr3 7098645 7098672 -210938486 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 7098961 7099039 -210938119 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 7099039 7099320 -210937838 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 7099320 7099412 -210937746 + MIR SINE MIR 163 262 0 1229 134 113 79 chr3 7099612 7099904 -210937254 + AluJo SINE Alu 1 302 0 1536 110 4 25 chr3 7099916 7100161 -210936997 + AluSq SINE Alu 67 306 -7 242 303 121 0 chr3 7100890 7100989 -210936169 - L2 LINE L2 -1 3271 3161 1308 158 63 60 chr3 7101405 7101690 -210935468 + AluJo SINE Alu 23 308 -4 678 159 0 90 chr3 7102169 7102203 -210934955 - MER94 DNA DNA -1 133 98 2216 110 3 13 chr3 7102203 7102502 -210934656 - AluSx SINE Alu -16 296 1 678 159 0 90 chr3 7102502 7102612 -210934546 - MER94 DNA DNA -36 98 2 2196 157 60 35 chr3 7102651 7103103 -210934055 + MLT1C LTR MaLR 5 467 0 2341 107 22 19 chr3 7103226 7103592 -210933566 - L1PA16 LINE L1 0 6166 5800 2192 118 10 0 chr3 7103593 7103889 -210933269 - AluSq SINE Alu -14 299 1 2255 129 0 0 chr3 7104462 7104773 -210932385 + AluSx SINE Alu 1 311 -1 2108 135 0 3 chr3 7104962 7105266 -210931892 + AluSq SINE Alu 1 303 -10 2140 123 14 0 chr3 7105270 7105563 -210931595 + AluSx SINE Alu 1 297 -15 1922 128 3 61 chr3 7106148 7106461 -210930697 + AluSp SINE Alu 1 295 -18 2131 127 13 0 chr3 7106516 7106815 -210930343 + AluSg SINE Alu 1 303 -7 2513 135 46 14 chr3 7107308 7107708 -210929450 - MER65A LTR ERV1 0 445 29 2024 126 0 0 chr3 7107708 7107979 -210929179 - AluSx SINE Alu -41 271 1 2513 135 46 14 chr3 7107979 7108009 -210929149 - MER65A LTR ERV1 -416 29 1 783 163 7 22 chr3 7108044 7108179 -210928979 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7108257 7108323 -210928835 + GA-rich Low_complexity Low_complexity 4 67 0 343 263 32 0 chr3 7108333 7108428 -210928730 + MER97c DNA MER1_type? 27 124 -966 206 158 26 0 chr3 7108451 7108489 -210928669 + CT-rich Low_complexity Low_complexity 4 42 0 243 202 67 58 chr3 7108491 7108595 -210928563 + L1MDa LINE L1 2535 2639 -3901 998 259 4 8 chr3 7108607 7108858 -210928300 + AluJo SINE Alu 7 256 -56 1650 235 92 74 chr3 7110473 7111266 -210925892 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 7111463 7111698 -210925460 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 7111800 7112095 -210925063 - AluSx SINE Alu -18 294 2 1283 182 42 42 chr3 7112334 7112396 -210924762 + L1PA16 LINE L1 5875 5936 -230 2180 124 3 0 chr3 7112396 7112695 -210924463 + AluSx SINE Alu 1 300 -12 1283 182 42 42 chr3 7112695 7112918 -210924240 + L1PA16 LINE L1 5935 6160 -6 196 282 0 0 chr3 7113961 7114000 -210923158 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 7114482 7114767 -210922391 + AluJo SINE Alu 6 289 -23 2503 90 3 0 chr3 7116049 7116360 -210920798 - AluSp SINE Alu 0 313 2 1200 147 11 11 chr3 7116360 7116543 -210920615 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 7116544 7116591 -210920567 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 7116595 7116699 -210920459 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 7117049 7117281 -210919877 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 7117339 7117399 -210919759 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 7117399 7117709 -210919449 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 7117709 7117921 -210919237 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 7118472 7118640 -210918518 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 7118776 7118961 -210918197 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 7118966 7119289 -210917869 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 7119292 7119479 -210917679 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 7119479 7119772 -210917386 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 7119772 7120647 -210916511 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 7120647 7120946 -210916212 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 7120948 7121123 -210916035 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 7121128 7121344 -210915814 + AluSg/x SINE Alu 80 294 -16 2091 203 95 97 chr3 7121373 7122105 -210915053 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 7122105 7122467 -210914691 - THE1B LTR MaLR -1 363 1 2091 203 95 97 chr3 7122467 7122901 -210914257 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 7122901 7123169 -210913989 + AluJo SINE Alu 6 273 -39 2091 203 95 97 chr3 7123169 7123674 -210913484 + L1MDa LINE L1 2634 3139 -3401 1170 206 65 43 chr3 7123674 7123951 -210913207 + AluJb SINE Alu 3 285 -17 2091 203 95 97 chr3 7123951 7124233 -210912925 + L1MDa LINE L1 3139 3420 -3120 1060 158 0 0 chr3 7124234 7124386 -210912772 - FRAM SINE Alu -25 151 1 1356 217 114 46 chr3 7124386 7124873 -210912285 + L1MDa LINE L1 3407 3859 -2681 2171 113 0 0 chr3 7124873 7125181 -210911977 - AluSx SINE Alu 0 308 1 2230 106 0 0 chr3 7125187 7125501 -210911657 - AluSx SINE Alu 0 314 1 1356 217 114 46 chr3 7125501 7125616 -210911542 + L1MDa LINE L1 3863 4060 -2480 564 311 11 11 chr3 7126869 7127052 -210910106 + HERVI LTR ERV1 788 970 -6815 5253 307 45 46 chr3 7127278 7128240 -210908918 + HERVI LTR ERV1 954 1915 -5870 3215 55 43 5 chr3 7128240 7128661 -210908497 + L1PA5 LINE L1 5717 6153 -1 5253 307 45 46 chr3 7128661 7132107 -210905051 + HERVI LTR ERV1 1915 5756 -2029 2141 301 41 45 chr3 7132999 7134227 -210902931 + HERVI LTR ERV1 6425 7647 -138 2287 136 5 35 chr3 7135134 7135509 -210901649 - THE1B LTR MaLR 0 364 1 682 83 0 0 chr3 7135605 7135701 -210901457 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7136590 7136616 -210900542 + AT_rich Low_complexity Low_complexity 1 26 0 251 202 160 75 chr3 7137184 7137278 -210899880 - MIR SINE MIR -62 146 45 792 160 23 0 chr3 7137797 7137928 -210899230 + AluJo SINE Alu 2 135 -177 2286 115 3 10 chr3 7137946 7138260 -210898898 + AluSx SINE Alu 1 312 0 249 321 274 0 chr3 7138439 7138629 -210898529 - MIR SINE MIR -20 242 1 570 144 11 0 chr3 7139474 7139564 -210897594 + AluSc SINE Alu 194 284 -25 210 37 0 0 chr3 7139569 7139596 -210897562 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2089 112 0 3 chr3 7139596 7139927 -210897231 + AluSx SINE Alu 1 330 0 2279 101 0 0 chr3 7139927 7140214 -210896944 + AluSg SINE Alu 1 287 -23 812 170 69 6 chr3 7140239 7140398 -210896760 + AluSg/x SINE Alu 134 302 -7 2006 139 0 3 chr3 7140535 7140829 -210896329 + AluSx SINE Alu 1 293 -19 1422 164 21 52 chr3 7141749 7142036 -210895122 - AluJb SINE Alu -30 282 5 233 324 184 7 chr3 7142281 7142417 -210894741 + L2 LINE L2 2599 2758 -556 289 366 0 18 chr3 7142563 7142675 -210894483 + L2 LINE L2 3126 3235 -37 189 0 0 0 chr3 7142973 7142994 -210894164 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 246 256 61 12 chr3 7142995 7143077 -210894081 - L2 LINE L2 -18 3295 3210 2035 83 65 7 chr3 7143145 7143422 -210893736 + AluSx SINE Alu 1 293 -19 1604 181 13 32 chr3 7143499 7143808 -210893350 + AluJo SINE Alu 6 308 -4 2467 81 0 0 chr3 7143993 7144289 -210892869 + AluSx SINE Alu 1 296 -16 1865 106 124 4 chr3 7144479 7144754 -210892404 + AluSg SINE Alu 1 308 -2 1712 135 67 28 chr3 7144867 7145149 -210892009 + AluSx SINE Alu 1 293 -19 765 154 0 8 chr3 7145359 7145489 -210891669 + AluJ SINE Alu 1 129 -173 2165 125 0 3 chr3 7145520 7145815 -210891343 + AluSx SINE Alu 1 294 -18 710 175 0 8 chr3 7145828 7145948 -210891210 - FLAM_C SINE Alu -23 120 2 926 184 0 36 chr3 7145966 7146134 -210891024 + AluJ SINE Alu 129 290 -22 1242 130 0 0 chr3 7146342 7146519 -210890639 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7146536 7146778 -210890380 + L1ME4a LINE L1 5538 5835 -286 272 293 113 7 chr3 7146860 7147010 -210890148 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7147016 7147040 -210890118 + AT_rich Low_complexity Low_complexity 1 24 0 2021 94 91 0 chr3 7147501 7147777 -210889381 - AluSg SINE Alu -9 301 1 2344 97 3 0 chr3 7147783 7148093 -210889065 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 7148352 7148373 -210888785 + AT_rich Low_complexity Low_complexity 1 21 0 1805 157 7 20 chr3 7149300 7149600 -210887558 + AluSx SINE Alu 1 296 -16 329 296 53 59 chr3 7150299 7150468 -210886690 + MER5A DNA MER1_type 22 189 0 1802 150 10 20 chr3 7150778 7150911 -210886247 + AluJo SINE Alu 1 134 -178 2209 94 0 70 chr3 7150911 7151242 -210885916 + AluSg SINE Alu 1 308 -2 1802 150 10 20 chr3 7151242 7151401 -210885757 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7152203 7152225 -210884933 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 7152337 7152425 -210884733 + L2 LINE L2 3221 3308 -5 1752 137 53 0 chr3 7152504 7152788 -210884370 + AluJb SINE Alu 1 299 -13 1248 104 0 0 chr3 7152878 7153051 -210884107 + AluSp SINE Alu 132 304 -9 187 111 0 0 chr3 7153611 7153638 -210883520 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 7153927 7154005 -210883153 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 7154005 7154286 -210882872 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 7154286 7154378 -210882780 + MIR SINE MIR 163 262 0 1046 166 0 61 chr3 7154578 7154807 -210882351 + AluJo SINE Alu 1 215 -97 285 151 19 0 chr3 7154809 7154862 -210882296 + AluJo SINE Alu 83 136 -166 1527 111 4 25 chr3 7154884 7155128 -210882030 + AluSq SINE Alu 68 306 -7 242 303 121 0 chr3 7155857 7155956 -210881202 - L2 LINE L2 -1 3271 3161 1211 158 63 60 chr3 7156372 7156657 -210880501 + AluJo SINE Alu 23 308 -4 677 159 0 90 chr3 7157136 7157170 -210879988 - MER94 DNA DNA -1 133 98 2091 110 3 13 chr3 7157170 7157469 -210879689 - AluSx SINE Alu -16 296 1 677 159 0 90 chr3 7157469 7157579 -210879579 - MER94 DNA DNA -36 98 2 2198 157 60 35 chr3 7157618 7158070 -210879088 + MLT1C LTR MaLR 5 467 0 2339 107 22 19 chr3 7158193 7158559 -210878599 - L1PA16 LINE L1 0 6166 5800 2067 118 10 0 chr3 7158560 7158856 -210878302 - AluSq SINE Alu -14 299 1 2132 129 0 0 chr3 7159429 7159740 -210877418 + AluSx SINE Alu 1 311 -1 1989 135 0 3 chr3 7159929 7160233 -210876925 + AluSq SINE Alu 1 303 -10 2050 119 14 0 chr3 7160237 7160531 -210876627 + AluSx SINE Alu 1 298 -14 1789 127 3 67 chr3 7161116 7161431 -210875727 + AluSp SINE Alu 1 295 -18 1989 130 13 0 chr3 7161486 7161785 -210875373 + AluSg SINE Alu 1 303 -7 2496 135 46 14 chr3 7162278 7162678 -210874480 - MER65A LTR ERV1 0 445 29 1905 126 0 0 chr3 7162678 7162949 -210874209 - AluSx SINE Alu -41 271 1 2496 135 46 14 chr3 7162949 7162979 -210874179 - MER65A LTR ERV1 -416 29 1 770 170 7 22 chr3 7163014 7163149 -210874009 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7163227 7163293 -210873865 + GA-rich Low_complexity Low_complexity 4 67 0 345 263 32 0 chr3 7163303 7163398 -210873760 + MER97b DNA MER1_type? 27 124 -929 504 130 6 62 chr3 7163425 7163586 -210873572 + (TCC)n Simple_repeat Simple_repeat 3 154 0 750 138 9 0 chr3 7163592 7163701 -210873457 - FLAM_C SINE Alu -32 111 2 1767 112 6 74 chr3 7163710 7163876 -210873282 - AluSx SINE Alu -21 291 154 2160 78 28 0 chr3 7163876 7164160 -210872998 - AluSg SINE Alu -5 305 14 1767 112 6 74 chr3 7164160 7164305 -210872853 - AluSx SINE Alu -158 154 1 334 191 32 0 chr3 7164309 7164372 -210872786 + MER97a DNA MER1_type? 113 177 -717 877 212 4 100 chr3 7164491 7164732 -210872426 + MER20 DNA MER1_type 2 219 0 363 324 171 0 chr3 7164953 7165123 -210872035 - MIR SINE MIR -12 250 52 803 167 0 14 chr3 7165189 7165327 -210871831 + AluJ SINE Alu 2 137 -175 1014 146 6 0 chr3 7165378 7165549 -210871609 + AluJ SINE Alu 141 312 0 1941 118 24 10 chr3 7165845 7166141 -210871017 - AluSx SINE Alu -12 300 1 1690 171 4 4 chr3 7166381 7166662 -210870496 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr3 7166711 7166733 -210870425 + AT_rich Low_complexity Low_complexity 1 22 0 1318 181 115 0 chr3 7166734 7167022 -210870136 + L1MC2 LINE L1 6002 6322 -22 954 145 0 13 chr3 7167029 7167207 -210869951 - AluSg/x SINE Alu 0 309 134 2254 108 0 0 chr3 7167207 7167514 -210869644 - AluSx SINE Alu -5 307 1 1691 157 13 53 chr3 7167525 7167843 -210869315 - AluSx SINE Alu -7 305 1 449 274 37 22 chr3 7167941 7168066 -210869092 - MIR3 SINE MIR -21 187 58 1922 125 3 27 chr3 7168066 7168363 -210868795 - AluSx SINE Alu -22 290 1 627 197 0 16 chr3 7168572 7168694 -210868464 + FRAM SINE Alu 57 176 0 1831 131 52 3 chr3 7168699 7168989 -210868169 + AluSx SINE Alu 1 304 -8 2070 100 0 0 chr3 7169439 7169718 -210867440 + AluY SINE Alu 1 279 -32 180 0 0 0 chr3 7169720 7169740 -210867418 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 233 213 82 16 chr3 7169807 7169868 -210867290 + LTR8 LTR ERV1 238 302 -389 204 268 52 31 chr3 7170106 7170203 -210866955 - MIR SINE MIR -79 183 85 2104 81 0 32 chr3 7170315 7170624 -210866534 + AluY SINE Alu 12 310 -1 319 276 0 61 chr3 7170678 7170776 -210866382 + L1MC4 LINE L1 6612 6703 -1339 304 205 250 58 chr3 7170764 7170920 -210866238 + L1MC4a LINE L1 5948 6133 -1675 * 2140 121 0 6 chr3 7170951 7171265 -210865893 - AluSx SINE Alu 0 312 1 2213 105 0 0 chr3 7171353 7171648 -210865510 - AluSx SINE Alu -17 295 1 619 307 99 27 chr3 7171695 7171779 -210865379 - L2 LINE L2 -81 3232 3155 1633 157 31 7 chr3 7171779 7172073 -210865085 + AluJo SINE Alu 6 306 -6 619 307 99 27 chr3 7172073 7172444 -210864714 - L2 LINE L2 -158 3155 2739 741 165 8 30 chr3 7172610 7172743 -210864415 + FLAM_C SINE Alu 2 131 -12 324 294 33 11 chr3 7172788 7172880 -210864278 + polypyrimidine Low_complexity Low_complexity 5 98 0 488 239 33 10 chr3 7172884 7173376 -210863782 + CT-rich Low_complexity Low_complexity 1 503 0 1000 230 0 30 chr3 7173479 7173714 -210863444 - AluSq SINE Alu -85 228 1 922 209 90 0 chr3 7173714 7173915 -210863243 - L1MD2 LINE L1 -197 6162 5944 302 245 96 11 chr3 7173915 7174009 -210863149 + MER69 DNA AcHobo 2425 2526 0 1152 94 0 44 chr3 7174291 7174471 -210862687 + AluSc SINE Alu 1 172 -137 181 236 200 18 chr3 7174562 7174617 -210862541 - MIR SINE MIR -160 102 38 189 317 99 49 chr3 7174788 7174930 -210862228 + MIR SINE MIR 3 151 -111 205 298 91 73 chr3 7174987 7175182 -210861976 - MIR SINE MIR -57 205 2 2542 36 0 3 chr3 7175253 7175559 -210861599 + AluY SINE Alu 5 309 -2 1130 118 18 13 chr3 7175559 7175899 -210861259 + MER49 LTR ERV1 152 534 -389 2218 106 3 0 chr3 7175900 7176211 -210860947 - AluSx SINE Alu 0 312 1 1005 86 0 7 chr3 7176213 7176352 -210860806 - AluYb8 SINE Alu -180 138 1 1274 228 59 62 chr3 7176354 7176448 -210860710 + MER49 LTR ERV1 521 614 -309 1993 139 3 3 chr3 7176448 7176758 -210860400 - AluSx SINE Alu -2 310 1 1274 228 59 62 chr3 7176758 7177067 -210860091 + MER49 LTR ERV1 614 923 0 268 152 30 0 chr3 7177176 7177242 -210859916 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 1859 118 21 3 chr3 7178991 7179279 -210857879 - AluSx SINE Alu -19 293 1 865 118 7 29 chr3 7179381 7179517 -210857641 - FLAM_C SINE Alu 0 133 1 1493 158 3 44 chr3 7179575 7179872 -210857286 - AluJo SINE Alu -10 302 18 587 273 126 25 chr3 7180150 7180388 -210856770 + MIR SINE MIR 1 262 0 2154 105 0 0 chr3 7180648 7180944 -210856214 - AluSx SINE Alu -16 296 1 732 144 23 0 chr3 7181007 7181139 -210856019 + L1MA7 LINE L1 6155 6289 -2 422 229 83 57 chr3 7182209 7182366 -210854792 - MIR3 SINE MIR 0 208 48 22 0 0 0 chr3 7182467 7182489 -210854669 + AT_rich Low_complexity Low_complexity 1 22 0 1937 63 0 0 chr3 7182774 7183013 -210854145 + AluY SINE Alu 72 310 -1 1902 94 91 0 chr3 7183019 7183295 -210853863 + AluSg SINE Alu 1 301 -9 24 0 0 0 chr3 7183756 7183780 -210853378 + AT_rich Low_complexity Low_complexity 1 24 0 264 293 113 7 chr3 7183786 7183936 -210853222 - L1ME4a LINE L1 0 6121 5956 303 170 136 78 chr3 7184018 7184260 -210852898 - L1ME4a LINE L1 -286 5835 5538 1177 130 0 0 chr3 7184277 7184454 -210852704 - AluSq SINE Alu -4 309 133 865 184 0 36 chr3 7184662 7184830 -210852328 - AluJ SINE Alu -22 290 129 717 175 0 8 chr3 7184848 7184968 -210852190 + AluJo/FLAM SINE Alu 2 120 -192 2092 137 0 0 chr3 7184968 7185275 -210851883 - AluSx SINE Alu -5 307 1 787 154 0 8 chr3 7185306 7185436 -210851722 - AluJ SINE Alu -173 129 1 1599 135 67 28 chr3 7185646 7185928 -210851230 - AluSx SINE Alu -19 293 1 1754 106 124 4 chr3 7186041 7186316 -210850842 - AluSg SINE Alu -2 308 1 2333 81 0 0 chr3 7186506 7186802 -210850356 - AluSx SINE Alu -16 296 1 1502 181 13 24 chr3 7186987 7187285 -210849873 - AluJo SINE Alu -4 308 14 1913 83 65 7 chr3 7187373 7187650 -210849508 - AluSx SINE Alu -19 293 1 276 256 61 12 chr3 7187718 7187800 -210849358 + L2 LINE L2 3210 3295 -18 189 0 0 0 chr3 7187801 7187822 -210849336 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 335 328 156 16 chr3 7188104 7188232 -210848926 - L2 LINE L2 -1 3271 3126 1319 164 21 52 chr3 7188759 7189046 -210848112 + AluJb SINE Alu 5 282 -30 1891 139 0 3 chr3 7189966 7190260 -210846898 - AluSx SINE Alu -19 293 1 808 165 61 91 chr3 7190395 7190581 -210846577 - AluSg/x SINE Alu -5 305 115 2151 101 0 0 chr3 7190581 7190868 -210846290 - AluSg SINE Alu -23 287 1 374 0 0 21 chr3 7190868 7190915 -210846243 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1945 109 3 3 chr3 7190915 7191199 -210845959 - AluSx SINE Alu -28 284 1 210 37 0 0 chr3 7191199 7191226 -210845932 + (TTA)n Simple_repeat Simple_repeat 3 29 0 808 165 61 91 chr3 7191226 7191266 -210845892 - AluSg/x SINE Alu -191 119 83 389 146 0 0 chr3 7191266 7191321 -210845837 - AluSg/x SINE Alu -52 250 196 320 317 254 5 chr3 7192166 7192371 -210844787 + MIR SINE MIR 1 256 -6 2155 115 3 10 chr3 7192535 7192849 -210844309 - AluSx SINE Alu 0 312 1 799 160 23 0 chr3 7192867 7192998 -210844160 - AluJo SINE Alu -177 135 2 281 210 155 81 chr3 7193477 7193614 -210843544 + MIR SINE MIR 2 146 -62 26 0 0 0 chr3 7194182 7194208 -210842950 + AT_rich Low_complexity Low_complexity 1 26 0 685 83 0 0 chr3 7195097 7195193 -210841965 - AluY SINE Alu -8 303 208 2290 136 5 35 chr3 7195289 7195664 -210841494 + THE1B LTR MaLR 1 364 0 2179 304 39 43 chr3 7196572 7197800 -210839358 - HERVI LTR ERV1 -138 7647 6425 5328 310 45 47 chr3 7198692 7202138 -210835020 - HERVI LTR ERV1 -2029 5756 2139 3213 55 43 5 chr3 7202138 7202559 -210834599 - L1PA5 LINE L1 -1 6153 5717 5328 310 45 47 chr3 7202559 7203510 -210833648 - HERVI LTR ERV1 -5646 2139 1187 1402 222 113 44 chr3 7205181 7205296 -210831862 - L1MDa LINE L1 -2480 4060 3954 2209 106 0 0 chr3 7205296 7205610 -210831548 + AluSx SINE Alu 1 314 0 2153 113 0 0 chr3 7205616 7205924 -210831234 + AluSx SINE Alu 1 308 0 1402 222 113 44 chr3 7205924 7206411 -210830747 - L1MDa LINE L1 -2590 3950 3407 1049 158 0 0 chr3 7206411 7206563 -210830595 + FRAM SINE Alu 1 151 -25 2131 203 95 98 chr3 7206564 7206846 -210830312 - L1MDa LINE L1 -3120 3420 3138 1296 199 65 43 chr3 7206846 7207123 -210830035 - AluJb SINE Alu -17 285 3 2131 203 95 98 chr3 7207123 7207628 -210829530 - L1MDa LINE L1 -3402 3138 2633 1569 187 4 4 chr3 7207628 7207896 -210829262 - AluJo SINE Alu -39 273 6 2131 203 95 98 chr3 7207896 7208330 -210828828 - L1MDa LINE L1 -3907 2633 2199 2183 147 28 22 chr3 7208330 7208691 -210828467 + THE1B LTR MaLR 1 363 -1 2131 203 95 98 chr3 7208691 7209427 -210827731 - L1MDa LINE L1 -4341 2199 1469 1384 134 5 9 chr3 7209456 7209672 -210827486 - AluSg/x SINE Alu -16 296 82 859 149 63 11 chr3 7209677 7209852 -210827306 - L1MB3 LINE L1 -51 6132 5949 1658 127 0 80 chr3 7209854 7210153 -210827005 - AluSx SINE Alu -37 275 1 4866 156 35 41 chr3 7210153 7211028 -210826130 - L1M4c LINE L1 -4608 1776 908 1949 154 0 0 chr3 7211028 7211321 -210825837 - AluSx SINE Alu -19 293 1 4866 156 35 41 chr3 7211321 7211508 -210825650 - L1M4c LINE L1 -5476 908 721 2104 118 3 37 chr3 7211511 7211834 -210825324 - AluSx SINE Alu 0 312 1 1059 119 0 92 chr3 7211839 7212024 -210825134 - AluSx SINE Alu -144 168 1 244 327 18 30 chr3 7212160 7212328 -210824830 - L1MDa LINE L1 -5511 1019 854 284 363 18 33 chr3 7212879 7213091 -210824067 - L1MDa LINE L1 -6223 317 108 1954 132 3 32 chr3 7213091 7213401 -210823757 - AluSx SINE Alu -11 301 1 284 363 18 33 chr3 7213401 7213461 -210823697 - L1MDa LINE L1 -6432 108 49 690 315 17 9 chr3 7213519 7213751 -210823407 - MIR SINE MIR -17 245 12 805 96 0 0 chr3 7214101 7214205 -210822953 + AluJb SINE Alu 7 110 -202 291 128 0 21 chr3 7214209 7214256 -210822902 - AluSp SINE Alu -141 162 117 1174 152 11 11 chr3 7214257 7214440 -210822718 + AluJb SINE Alu 122 307 -5 2489 90 3 0 chr3 7214440 7214751 -210822407 + AluSp SINE Alu 2 313 0 1184 186 53 56 chr3 7216033 7216318 -210820840 - AluJo SINE Alu -23 289 6 210 282 0 0 chr3 7216801 7216840 -210820318 - MIR SINE MIR -133 75 37 185 306 69 14 chr3 7216919 7216991 -210820167 + L2 LINE L2 3019 3094 -219 1234 175 45 65 chr3 7217881 7218104 -210819054 - L1PA16 LINE L1 -6 6160 5943 2141 119 3 0 chr3 7218104 7218397 -210818761 - AluSx SINE Alu -12 300 7 1234 175 45 65 chr3 7218397 7218465 -210818693 - L1PA16 LINE L1 -223 5943 5875 2216 98 0 7 chr3 7218704 7218999 -210818159 + AluSx SINE Alu 2 294 -18 1306 162 43 43 chr3 7219101 7219336 -210817822 + MER8 DNA MER2_type 4 238 -1 1697 235 92 74 chr3 7219533 7220326 -210816832 - L1MC4 LINE L1 -1 8041 7235 2279 105 0 0 chr3 7221159 7221454 -210815704 - AluSc SINE Alu -14 295 1 1983 104 45 3 chr3 7221465 7221754 -210815404 - AluSx SINE Alu -11 301 1 417 264 162 0 chr3 7222072 7222220 -210814938 - MIR3 SINE MIR -4 204 33 346 171 100 0 chr3 7222412 7222482 -210814676 + Tigger7 DNA MER2_type 1 77 -473 1092 101 0 0 chr3 7222501 7222649 -210814509 + Tigger7 DNA MER2_type 2339 2486 -1 516 264 21 7 chr3 7222707 7222847 -210814311 + MIR SINE MIR 73 214 -48 1461 186 13 68 chr3 7223180 7223487 -210813671 - AluJb SINE Alu -22 290 1 191 303 61 15 chr3 7223771 7223837 -210813321 - MIR3 SINE MIR -29 179 111 21 71 0 0 chr3 7224061 7224103 -210813055 + AT_rich Low_complexity Low_complexity 1 42 0 827 176 42 18 chr3 7224188 7224353 -210812805 - L1MB3 LINE L1 -1 6182 6014 1605 194 7 18 chr3 7224359 7224414 -210812744 - L1MB3 LINE L1 -205 5966 5912 393 39 0 0 chr3 7224414 7224465 -210812693 + (TG)n Simple_repeat Simple_repeat 1 51 0 1605 194 7 18 chr3 7224465 7224825 -210812333 - L1MB3 LINE L1 -259 5912 5350 2009 138 6 6 chr3 7225833 7226145 -210811013 - AluSx SINE Alu 0 312 1 2139 95 18 7 chr3 7226458 7226761 -210810397 - AluSq SINE Alu 0 306 1 492 307 81 45 chr3 7228046 7228378 -210808780 - L2 LINE L2 -18 3295 2952 690 120 88 16 chr3 7228429 7228554 -210808604 + MER46A DNA MER2_type 103 236 0 1942 58 81 0 chr3 7228575 7228865 -210808293 + AluY SINE Alu 2 312 0 238 274 0 0 chr3 7229698 7229749 -210807409 + MER6B DNA MER2_type 2 52 -224 539 74 98 0 chr3 7229770 7229933 -210807225 + (TA)n Simple_repeat Simple_repeat 2 180 0 1920 122 15 0 chr3 7229936 7230207 -210806951 - AluSx SINE Alu -24 288 14 874 153 127 0 chr3 7230257 7230407 -210806751 + MER6B DNA MER2_type 37 205 -5 1818 192 68 21 chr3 7230690 7231118 -210806040 - MLT1C LTR MaLR -2 465 18 2156 125 0 3 chr3 7231347 7231651 -210805507 - AluSx SINE Alu -9 303 1 1152 149 123 0 chr3 7231942 7232137 -210805021 + MER20 DNA MER1_type 1 219 0 2344 70 13 0 chr3 7232575 7232873 -210804285 - AluSq SINE Alu -11 302 1 189 0 0 0 chr3 7233470 7233491 -210803667 + (T)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr3 7234819 7234848 -210802310 + AT_rich Low_complexity Low_complexity 1 29 0 371 266 107 35 chr3 7237463 7237632 -210799526 + MIR3 SINE MIR 22 202 -6 2141 86 41 3 chr3 7238028 7238318 -210798840 - AluY SINE Alu -10 301 1 2025 124 14 0 chr3 7238875 7239166 -210797992 - AluSx SINE Alu -16 296 2 841 187 211 32 chr3 7239179 7239577 -210797581 + LTR54B LTR ERV1 2 510 0 426 254 59 0 chr3 7239658 7239776 -210797382 - FAM SINE Alu -26 159 35 231 235 39 0 chr3 7239784 7239835 -210797323 - L1MC/D LINE L1 -2305 5503 5451 1947 134 10 3 chr3 7239901 7240193 -210796965 - AluSx SINE Alu -18 294 1 482 220 197 34 chr3 7240238 7240441 -210796717 - MIR SINE MIR -25 237 17 22 56 0 0 chr3 7242683 7242719 -210794439 + GC_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7243236 7243259 -210793899 + GC_rich Low_complexity Low_complexity 1 23 0 309 283 143 87 chr3 7243365 7243687 -210793471 + L1M2 LINE L1 630 969 -5880 2344 67 3 0 chr3 7244721 7245018 -210792140 - AluY SINE Alu -13 298 1 31 0 0 0 chr3 7245976 7246007 -210791151 + AT_rich Low_complexity Low_complexity 1 31 0 1761 86 9 0 chr3 7246007 7246240 -210790918 - L1MA2 LINE L1 0 6304 6070 1916 144 0 34 chr3 7246329 7246649 -210790509 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 7248034 7248055 -210789103 + AT_rich Low_complexity Low_complexity 1 21 0 2446 84 0 0 chr3 7248717 7249014 -210788144 - AluSq SINE Alu -16 297 1 2025 121 0 0 chr3 7251291 7251572 -210785586 + AluSx SINE Alu 1 281 -31 207 0 0 0 chr3 7251578 7251601 -210785557 + (CA)n Simple_repeat Simple_repeat 2 24 0 221 222 79 32 chr3 7251660 7251723 -210785435 - MIR3 SINE MIR -14 194 129 822 110 17 0 chr3 7252061 7252179 -210784979 - AluSc SINE Alu -26 283 164 201 171 0 0 chr3 7252180 7252215 -210784943 + T-rich Low_complexity Low_complexity 1 35 0 281 219 110 24 chr3 7252237 7252319 -210784839 + L2 LINE L2 3184 3272 0 445 271 7 52 chr3 7252378 7252533 -210784625 - MER103 DNA DNA 0 166 19 1984 154 52 12 chr3 7253997 7254327 -210782831 - MER61A LTR ERV1 0 343 1 840 133 7 53 chr3 7254374 7254525 -210782633 + MLT1B LTR MaLR 239 382 -8 3127 186 25 21 chr3 7254704 7255264 -210781894 - MER68 LTR ERV1 0 562 1 2093 141 3 0 chr3 7255628 7255925 -210781233 - AluJb SINE Alu -14 298 1 234 261 45 81 chr3 7255936 7256047 -210781111 + L2 LINE L2 3199 3305 -8 393 308 60 8 chr3 7256878 7257011 -210780147 - MIR3 SINE MIR -48 160 21 377 245 133 10 chr3 7257401 7257499 -210779659 + L2 LINE L2 3188 3297 -16 2092 158 29 8 chr3 7257507 7257887 -210779271 + MLT1B LTR MaLR 3 390 0 419 257 13 72 chr3 7258664 7258816 -210778342 + MIR SINE MIR 77 219 -43 289 0 148 0 chr3 7258912 7258973 -210778185 + A-rich Low_complexity Low_complexity 6 75 0 389 313 0 0 chr3 7258982 7259081 -210778077 + MIR SINE MIR 34 132 -76 309 289 86 16 chr3 7259584 7259712 -210777446 - L3 LINE CR1 -307 1270 1134 288 263 79 94 chr3 7260509 7260724 -210776434 + MIR SINE MIR 1 218 -44 953 92 0 241 chr3 7260724 7260901 -210776257 + MER5A DNA MER1_type 1 219 30 348 24 0 0 chr3 7260901 7260942 -210776216 + (TG)n Simple_repeat Simple_repeat 2 42 0 2171 120 0 3 chr3 7260947 7261246 -210775912 - AluSx SINE Alu -14 298 1 953 92 0 241 chr3 7261246 7261311 -210775847 + MER5A DNA MER1_type 110 189 0 288 263 79 94 chr3 7261311 7261361 -210775797 + MIR SINE MIR 218 262 0 1606 190 16 29 chr3 7261608 7261924 -210775234 + AluJb SINE Alu 1 312 0 201 304 14 87 chr3 7262048 7262117 -210775041 - L2 LINE L2 -9 3263 3200 773 292 33 17 chr3 7262207 7262447 -210774711 - MIR SINE MIR -1 261 18 467 273 60 105 chr3 7262535 7262887 -210774271 + MLT1I LTR MaLR 74 409 0 2108 115 7 23 chr3 7263015 7263320 -210773838 - AluSx SINE Alu -10 302 3 210 313 0 0 chr3 7264379 7264446 -210772712 + MIR SINE MIR 81 147 -115 239 197 211 14 chr3 7264450 7264521 -210772637 - L2 LINE L2 -2 3311 3227 678 264 73 67 chr3 7264719 7264966 -210772192 - L2 LINE L2 -348 2966 2715 1496 190 48 7 chr3 7264966 7265256 -210771902 - AluJo SINE Alu -10 302 1 678 264 73 67 chr3 7265256 7265352 -210771806 - L2 LINE L2 -599 2715 2621 861 256 106 57 chr3 7265631 7265733 -210771425 - LTR33A LTR ERVL -6 517 421 1954 146 3 0 chr3 7265733 7266027 -210771131 + AluSx SINE Alu 1 295 -17 861 256 106 57 chr3 7266027 7266416 -210770742 - LTR33A LTR ERVL -102 421 2 244 327 55 110 chr3 7267477 7267741 -210769417 - L2 LINE L2 -1 3271 3049 2332 93 3 0 chr3 7267741 7268032 -210769126 - AluSx SINE Alu -20 292 1 244 327 55 110 chr3 7268032 7268290 -210768868 - L2 LINE L2 -223 3049 2779 976 318 130 16 chr3 7268368 7268859 -210768299 - L3 LINE CR1 -188 1389 843 684 266 89 10 chr3 7269157 7269360 -210767798 + MIR SINE MIR 39 257 -5 260 357 9 0 chr3 7269375 7269487 -210767671 - MIR SINE MIR -10 252 140 294 217 39 163 chr3 7270785 7270914 -210766244 + L2 LINE L2 3182 3294 -19 315 279 130 0 chr3 7270978 7271139 -210766019 - MIR SINE MIR 0 262 81 629 246 82 75 chr3 7271685 7271966 -210765192 - MLT1K LTR MaLR -2 586 304 265 265 47 82 chr3 7271970 7272140 -210765018 - MLT1J2 LTR MaLR 0 450 287 248 323 0 0 chr3 7272433 7272495 -210764663 - MLT1K LTR MaLR -347 241 180 1442 257 73 35 chr3 7272511 7272910 -210764248 - L2 LINE L2 -2 3311 2929 1675 188 27 48 chr3 7272910 7273283 -210763875 + MLT1A1 LTR MaLR 1 365 0 1442 257 73 35 chr3 7273283 7273632 -210763526 - L2 LINE L2 -384 2929 2526 300 345 67 8 chr3 7273635 7273754 -210763404 - MLT1K LTR MaLR -401 187 62 376 298 35 0 chr3 7273786 7273900 -210763258 - MLT1I LTR MaLR -4 405 288 1210 213 30 4 chr3 7273988 7274350 -210762808 - MER74A LTR ERVL -90 468 14 721 167 25 0 chr3 7274354 7274474 -210762684 + FAM SINE Alu 1 40 -9 415 291 15 65 chr3 7274516 7274715 -210762443 - MLT1I LTR MaLR -141 268 80 1201 210 258 76 chr3 7275024 7275525 -210761633 - MLT1G1 LTR MaLR -1 594 3 195 288 61 0 chr3 7275613 7275679 -210761479 + L2 LINE L2 3154 3223 -49 1304 264 124 30 chr3 7275725 7276251 -210760907 + MLT1L LTR MaLR 41 615 0 277 211 67 96 chr3 7277042 7277229 -210759929 - LOR1a LTR ERV1 0 603 310 477 0 0 0 chr3 7277474 7277527 -210759631 + (CA)n Simple_repeat Simple_repeat 2 54 0 249 293 211 48 chr3 7277800 7277947 -210759211 + MLT1K LTR MaLR 350 520 -68 1868 172 0 10 chr3 7278473 7278787 -210758371 - AluSx SINE Alu -1 311 1 552 272 0 0 chr3 7278889 7279003 -210758155 + MER81 DNA DNA 1 114 0 368 289 44 0 chr3 7279036 7279126 -210758032 - L2 LINE L2 -17 3255 3162 1380 235 102 40 chr3 7279365 7279722 -210757436 + LTR16A1 LTR ERVL 1 391 -66 2111 163 10 61 chr3 7279722 7280133 -210757025 + MLT1B LTR MaLR 1 390 0 1380 235 102 40 chr3 7280133 7280205 -210756953 + LTR16A1 LTR ERVL 391 457 0 4316 84 14 9 chr3 7280659 7281230 -210755928 + L1PA10 LINE L1 5592 6165 -3 339 258 31 69 chr3 7281272 7281431 -210755727 + MIR SINE MIR 109 261 -1 349 143 0 0 chr3 7281515 7281571 -210755587 - MER63 DNA MER1_type -36 1025 970 303 219 41 0 chr3 7281590 7281663 -210755495 - MER63 DNA MER1_type -128 708 7 6002 41 0 3 chr3 7281970 7282652 -210754506 - L1PA5 LINE L1 -1 6153 5474 437 69 0 0 chr3 7282654 7282712 -210754446 + L1P2 LINE L1 3697 3754 -2392 6638 33 0 0 chr3 7282844 7283727 -210753431 + L1P2 LINE L1 4603 5485 -669 217 297 55 22 chr3 7283879 7283970 -210753188 + MIR3 SINE MIR 101 194 -14 225 359 60 17 chr3 7283996 7284113 -210753045 + L2 LINE L2 3141 3262 -10 840 102 0 121 chr3 7284616 7284782 -210752376 - THE1C LTR MaLR 0 375 230 2278 78 7 0 chr3 7284783 7285079 -210752079 - AluY SINE Alu -13 298 1 1983 104 45 3 chr3 7285090 7285379 -210751779 - AluSx SINE Alu -11 301 1 417 264 162 0 chr3 7285697 7285845 -210751313 - MIR3 SINE MIR -4 204 33 346 171 100 0 chr3 7286037 7286107 -210751051 + Tigger7 DNA MER2_type 1 77 -473 1092 101 0 0 chr3 7286126 7286274 -210750884 + Tigger7 DNA MER2_type 2343 2490 -1 516 264 21 7 chr3 7286332 7286472 -210750686 + MIR SINE MIR 73 214 -48 1461 186 13 68 chr3 7286805 7287112 -210750046 - AluJb SINE Alu -22 290 1 191 303 61 15 chr3 7287397 7287463 -210749695 - MIR3 SINE MIR -29 179 111 21 71 0 0 chr3 7287687 7287729 -210749429 + AT_rich Low_complexity Low_complexity 1 42 0 878 174 30 18 chr3 7287814 7287981 -210749177 - L1MB3 LINE L1 -1 6182 6014 1605 194 7 18 chr3 7287987 7288042 -210749116 - L1MB3 LINE L1 -205 5966 5912 393 39 0 0 chr3 7288042 7288093 -210749065 + (TG)n Simple_repeat Simple_repeat 1 51 0 1605 194 7 18 chr3 7288093 7288453 -210748705 - L1MB3 LINE L1 -259 5912 5350 1924 143 7 7 chr3 7289472 7289773 -210747385 - AluSx SINE Alu -11 301 1 2139 95 18 7 chr3 7290087 7290390 -210746768 - AluSq SINE Alu 0 306 1 431 289 84 66 chr3 7291673 7292054 -210745104 - L2 LINE L2 -18 3295 2908 2457 102 12 86 chr3 7292217 7292327 -210744831 - MER4A LTR ERV1 -172 492 375 2035 128 3 13 chr3 7292327 7292633 -210744525 - AluSx SINE Alu -9 303 1 2457 102 12 86 chr3 7292633 7293094 -210744064 - MER4A LTR ERV1 -289 375 1 2065 121 28 0 chr3 7294225 7294514 -210742644 - AluSx SINE Alu -13 299 3 291 268 97 48 chr3 7294642 7294911 -210742247 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 7295152 7295183 -210741975 + AT_rich Low_complexity Low_complexity 1 31 0 1125 138 29 0 chr3 7295183 7295357 -210741801 - AluJb SINE Alu -13 299 121 1485 181 42 21 chr3 7295447 7295734 -210741424 - AluJo SINE Alu -19 293 1 268 180 67 90 chr3 7297903 7297992 -210739166 - L1MC5 LINE L1 -44 7917 7831 1683 189 7 3 chr3 7298014 7298316 -210738842 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 7298511 7298546 -210738612 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 7298622 7298645 -210738513 + AT_rich Low_complexity Low_complexity 1 23 0 1774 158 0 55 chr3 7298646 7298976 -210738182 - AluJb SINE Alu 0 312 1 229 296 25 12 chr3 7298998 7299079 -210738079 - L1ME4a LINE L1 -463 5658 5577 1629 214 81 29 chr3 7299683 7300215 -210736943 - MLT1F1 LTR MaLR 0 567 2 2346 97 0 0 chr3 7300491 7300790 -210736368 - AluSg SINE Alu -11 299 1 2107 123 0 3 chr3 7301783 7302092 -210735066 - AluSx SINE Alu -4 308 1 332 180 0 0 chr3 7303444 7303505 -210733653 - MLT2B1 LTR ERVL -4 516 456 * 1570 206 81 22 chr3 7303504 7303876 -210733282 - MLT2D LTR ERVL -20 534 1 5495 167 23 13 chr3 7304327 7305790 -210731368 + L1P5 LINE L1 4129 5608 -543 2430 77 0 3 chr3 7305790 7306089 -210731069 + AluY SINE Alu 1 298 -13 5495 167 23 13 chr3 7306089 7306253 -210730905 + L1P5 LINE L1 5608 5769 -382 991 337 33 19 chr3 7306661 7306714 -210730444 + L1M3c LINE L1 959 1010 -6088 198 0 0 0 chr3 7306714 7306736 -210730422 + (CA)n Simple_repeat Simple_repeat 1 22 0 991 337 33 19 chr3 7306736 7307109 -210730049 + L1M3c LINE L1 1010 1391 -5707 225 283 92 33 chr3 7307269 7307389 -210729769 + L1M3c LINE L1 1681 1807 -5361 3270 247 110 22 chr3 7307918 7308374 -210728784 + L1M3c LINE L1 1902 2316 -4851 7800 51 6 10 chr3 7308374 7309915 -210727243 + SVA Other Other 7 1385 -1 3270 247 110 22 chr3 7309915 7311720 -210725438 + L1M3c LINE L1 2316 3990 -3177 1809 162 3 17 chr3 7311720 7312010 -210725148 + AluJb SINE Alu 5 290 -22 3270 247 110 22 chr3 7312010 7312170 -210724988 + L1M3c LINE L1 3990 4134 -3033 1164 197 92 4 chr3 7312170 7312409 -210724749 + AluJo SINE Alu 1 260 -52 449 117 57 0 chr3 7312465 7312548 -210724610 - L1M2 LINE L1 -4352 1683 1346 6194 177 29 7 chr3 7312586 7313810 -210723348 + L1M3c LINE L1 4125 5375 -1792 1793 285 18 7 chr3 7313842 7314361 -210722797 - L1M2 LINE L1 -5251 704 1 227 317 45 22 chr3 7314463 7314687 -210722471 - L1M4 LINE L1 -3065 3081 2853 371 262 0 48 chr3 7315051 7315154 -210722004 + MIR SINE MIR 44 141 -67 282 253 121 96 chr3 7315392 7315590 -210721568 + MIR SINE MIR 19 221 -41 1137 130 6 0 chr3 7316321 7316490 -210720668 + AluSg/x SINE Alu 131 300 -10 1083 256 108 42 chr3 7317006 7317439 -210719719 + MLT1C LTR MaLR 5 466 -1 384 132 40 53 chr3 7317508 7317584 -210719574 - LTR65 LTR ERV1 -256 413 339 381 312 85 0 chr3 7318309 7318450 -210718708 + Charlie8 DNA MER1_type 113 265 -2152 2188 186 9 30 chr3 7318586 7319015 -210718143 - MLT1E2 LTR MaLR 0 626 207 3497 98 11 7 chr3 7319084 7319534 -210717624 - MLT2A2 LTR ERVL 0 453 2 1251 238 19 7 chr3 7319541 7319848 -210717310 + L1ME2 LINE L1 5840 6150 -14 195 42 0 0 chr3 7319875 7319899 -210717259 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1607 192 6 41 chr3 7319952 7320269 -210716889 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 7320898 7320920 -210716238 + AT_rich Low_complexity Low_complexity 1 22 0 293 324 22 7 chr3 7320983 7321119 -210716039 + MIR3 SINE MIR 57 194 -14 1292 212 33 29 chr3 7321204 7321510 -210715648 - MER58B DNA MER1_type 0 341 35 340 290 145 32 chr3 7321756 7322004 -210715154 + MLT1J LTR MaLR 1 276 -273 1533 286 82 8 chr3 7322117 7322593 -210714565 + MLT1E LTR MaLR 3 513 -80 470 216 22 65 chr3 7322641 7322780 -210714378 + MLT1J LTR MaLR 379 511 0 1797 147 3 20 chr3 7323135 7323428 -210713730 + AluSx SINE Alu 13 300 -12 281 275 57 9 chr3 7324763 7324877 -210712281 + MIR SINE MIR 36 154 -59 721 205 98 48 chr3 7324878 7325198 -210711960 - LTR37B LTR ERV1 0 468 125 796 220 43 0 chr3 7325288 7325502 -210711656 + MER58C DNA MER1_type 12 215 0 321 284 22 37 chr3 7326513 7326647 -210710511 + Charlie8 DNA MER1_type 61 192 -2225 291 215 11 108 chr3 7326663 7326729 -210710429 + MER5A DNA MER1_type 9 65 -124 2132 124 3 10 chr3 7326729 7327035 -210710123 + AluSx SINE Alu 1 304 -8 291 215 11 108 chr3 7327035 7327061 -210710097 + MER5A DNA MER1_type 65 92 -97 185 302 0 0 chr3 7327439 7327482 -210709676 + L2 LINE L2 3218 3260 -12 266 234 13 78 chr3 7327555 7327632 -210709526 + L2 LINE L2 3175 3246 -26 181 325 149 9 chr3 7327715 7327829 -210709329 - L2 LINE L2 -14 3299 3170 261 161 77 51 chr3 7327900 7327992 -210709166 - MLT1H LTR MaLR -18 572 281 346 192 51 0 chr3 7328056 7328134 -210709024 - MLT1H LTR MaLR -229 320 239 2239 111 16 3 chr3 7328167 7328474 -210708684 + AluSx SINE Alu 1 311 -1 531 288 18 12 chr3 7328811 7328974 -210708184 - MLT1H LTR MaLR -374 175 12 491 274 39 17 chr3 7329146 7329325 -210707833 - MIR SINE MIR -3 259 77 246 250 0 0 chr3 7330224 7330284 -210706874 + A-rich Low_complexity Low_complexity 1 60 0 448 290 33 49 chr3 7330305 7330488 -210706670 + MER117 DNA MER1_type 2 181 -16 1564 164 53 37 chr3 7330629 7330928 -210706230 + AluJo SINE Alu 1 304 -8 1554 196 39 0 chr3 7330949 7331235 -210705923 + AluJo SINE Alu 11 307 -5 233 169 0 84 chr3 7331866 7331937 -210705221 + T-rich Low_complexity Low_complexity 3 67 0 267 114 0 0 chr3 7331939 7331983 -210705175 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1847 153 33 0 chr3 7331983 7332304 -210704854 - AluJb SINE Alu 0 331 1 893 208 133 123 chr3 7332661 7333232 -210703926 - LTR8A LTR ERV1 -150 577 1 2022 115 11 0 chr3 7333348 7333707 -210703451 + AluSg SINE Alu 1 362 0 2230 121 3 0 chr3 7333771 7334069 -210703089 + AluSx SINE Alu 1 299 -13 1688 159 41 14 chr3 7334756 7335046 -210702112 + AluJo SINE Alu 1 298 -14 2361 64 0 3 chr3 7335149 7335458 -210701700 + AluY SINE Alu 1 308 0 1788 174 0 17 chr3 7335462 7335760 -210701398 + AluJb SINE Alu 1 293 -19 1080 114 27 0 chr3 7335975 7336124 -210701034 - AluSg/x SINE Alu -16 296 144 1092 266 58 0 chr3 7336124 7336432 -210700726 - MLT1B LTR MaLR -63 327 2 976 275 135 26 chr3 7336898 7337284 -210699874 - L2 LINE L2 0 3313 2886 533 267 0 8 chr3 7337288 7337419 -210699739 - AluJb SINE Alu -1 311 182 2118 229 66 57 chr3 7337434 7338044 -210699114 + MLT1E2 LTR MaLR 10 624 -2 531 273 50 0 chr3 7338076 7338237 -210698921 - L2 LINE L2 -420 2894 2726 269 318 95 0 chr3 7339575 7339701 -210697457 + MIR SINE MIR 117 254 -8 1924 168 10 0 chr3 7339912 7340222 -210696936 + 7SLRNA srpRNA srpRNA 1 313 -7 388 238 277 43 chr3 7340346 7340602 -210696556 - L2 LINE L2 -4 3309 2994 335 321 37 0 chr3 7340959 7341093 -210696065 - MIR SINE MIR 0 262 124 371 290 80 71 chr3 7341173 7341264 -210695894 + L3 LINE CR1 1115 1204 -373 2060 134 0 0 chr3 7341264 7341554 -210695604 + AluSx SINE Alu 1 290 -22 371 290 80 71 chr3 7341554 7341700 -210695458 + L3 LINE CR1 1204 1354 -223 350 264 38 9 chr3 7341701 7341807 -210695351 + LTR16A1 LTR ERVL 11 119 -338 234 0 0 0 chr3 7342007 7342033 -210695125 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2496 43 7 0 chr3 7343125 7343430 -210693728 - AluY SINE Alu -4 307 1 280 157 0 0 chr3 7343499 7343550 -210693608 - L1MB8 LINE L1 -4 6174 6124 1438 171 144 4 chr3 7343564 7343827 -210693331 - AluSg SINE Alu 0 300 1 22 0 0 0 chr3 7343827 7343849 -210693309 + AT_rich Low_complexity Low_complexity 1 22 0 2359 147 34 0 chr3 7343849 7344202 -210692956 - L1PA16 LINE L1 -9 6157 5793 322 132 38 0 chr3 7344202 7344255 -210692903 - L1MB8 LINE L1 -41 6137 6083 213 39 0 0 chr3 7344779 7344805 -210692353 + (CA)n Simple_repeat Simple_repeat 2 27 0 293 206 88 49 chr3 7344922 7345024 -210692134 + MER5A DNA MER1_type 81 186 -3 238 115 39 0 chr3 7345414 7345466 -210691692 + (CA)n Simple_repeat Simple_repeat 1 54 0 299 117 33 0 chr3 7345557 7345617 -210691541 + MER53 DNA DNA 3 64 -125 229 247 59 0 chr3 7345616 7345701 -210691457 - MER53 DNA DNA -89 100 11 * 1797 128 139 0 chr3 7345907 7346181 -210690977 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 7346187 7346211 -210690947 + AT_rich Low_complexity Low_complexity 1 24 0 202 267 0 0 chr3 7346453 7346498 -210690660 + MER91 DNA MER1_type 1 45 -151 1466 235 102 55 chr3 7346814 7347304 -210689854 + MLT1G LTR MaLR 8 520 -70 7572 58 3 3 chr3 7347840 7349328 -210687830 - L1PA7 LINE L1 0 6154 4668 4838 79 10 22 chr3 7349593 7350761 -210686397 + SVA Other Other 1 1386 0 22 70 0 0 chr3 7351148 7351191 -210685967 + AT_rich Low_complexity Low_complexity 1 43 0 708 219 8 0 chr3 7351260 7351379 -210685779 + FLAM_A SINE Alu 1 120 -13 294 282 39 19 chr3 7351918 7352021 -210685137 + MIR3 SINE MIR 54 158 -50 615 247 14 0 chr3 7352125 7352271 -210684887 - MER103 DNA DNA 0 166 19 2340 107 0 0 chr3 7352607 7352906 -210684252 + AluSx SINE Alu 1 299 -13 346 222 25 0 chr3 7353209 7353290 -210683868 + MER117 DNA MER1_type 75 157 -40 992 60 26 27 chr3 7353439 7353952 -210683206 + (TG)n Simple_repeat Simple_repeat 1 512 0 669 228 39 22 chr3 7354580 7354760 -210682398 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7354971 7355210 -210681948 + L2 LINE L2 2734 2977 -337 2508 59 0 3 chr3 7355279 7355583 -210681575 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7355592 7355872 -210681286 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7355875 7355926 -210681232 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7356044 7356497 -210680661 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7356526 7356554 -210680604 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7356554 7356597 -210680561 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7356597 7356714 -210680444 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7357485 7357590 -210679568 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7357963 7358140 -210679018 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7358400 7358699 -210678459 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7358725 7358888 -210678270 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7358888 7359190 -210677968 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7359198 7359384 -210677774 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7359417 7359584 -210677574 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7359584 7359820 -210677338 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7359820 7360097 -210677061 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7360218 7360308 -210676850 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7360878 7360997 -210676161 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7362139 7362204 -210674954 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7362204 7362744 -210674414 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7362744 7363071 -210674087 - MLT1K LTR MaLR -125 463 126 287 204 21 0 chr3 7363290 7363383 -210673775 + (TTCA)n Simple_repeat Simple_repeat 3 97 0 292 225 113 0 chr3 7363415 7363486 -210673672 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7363503 7363919 -210673239 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7364159 7364288 -210672870 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7364808 7364958 -210672200 - MIR SINE MIR -74 188 21 880 175 23 0 chr3 7365412 7365583 -210671575 - FRAM SINE Alu -1 175 1 2009 123 0 3 chr3 7366577 7366886 -210670272 - AluSx SINE Alu -4 308 1 213 189 0 0 chr3 7367813 7367850 -210669308 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 271 7 52 chr3 7368341 7368496 -210668662 + MER103 DNA DNA 19 166 0 292 219 110 24 chr3 7368555 7368637 -210668521 - L2 LINE L2 0 3272 3184 913 105 14 0 chr3 7368695 7368838 -210668320 + AluSc SINE Alu 164 308 -1 228 222 79 32 chr3 7369152 7369215 -210667943 + MIR3 SINE MIR 129 194 -14 207 0 0 0 chr3 7369274 7369297 -210667861 + (TG)n Simple_repeat Simple_repeat 2 24 0 1940 121 0 0 chr3 7369302 7369584 -210667574 - AluSx SINE Alu -30 282 1 2339 84 0 0 chr3 7371863 7372160 -210664998 + AluSq SINE Alu 1 297 -16 21 0 0 0 chr3 7372822 7372843 -210664315 + AT_rich Low_complexity Low_complexity 1 21 0 1808 147 0 34 chr3 7374228 7374548 -210662610 + AluJo SINE Alu 1 309 -3 1669 86 9 0 chr3 7374637 7374870 -210662288 + L1MA2 LINE L1 6070 6304 0 31 0 0 0 chr3 7374870 7374901 -210662257 + AT_rich Low_complexity Low_complexity 1 31 0 2160 64 4 0 chr3 7375859 7376140 -210661018 + AluY SINE Alu 1 282 -29 27 0 0 0 chr3 7377408 7377435 -210659723 + GC_rich Low_complexity Low_complexity 1 27 0 244 307 89 9 chr3 7379333 7379558 -210657600 - L1ME4a LINE L1 0 6121 5879 291 71 0 0 chr3 7380503 7380545 -210656613 + (TG)n Simple_repeat Simple_repeat 2 43 0 430 280 42 52 chr3 7380553 7380746 -210656412 - MIR3 SINE MIR -15 193 3 231 291 39 48 chr3 7380968 7381071 -210656087 + MER5A DNA MER1_type 88 189 0 253 284 155 26 chr3 7381345 7381500 -210655658 + MIR3 SINE MIR 1 175 -33 299 272 62 0 chr3 7381709 7381790 -210655368 - L2 LINE L2 -37 3235 3150 287 267 28 128 chr3 7381843 7382023 -210655135 - MER5B DNA MER1_type -14 164 3 231 299 21 21 chr3 7382453 7382550 -210654608 - LTR33 LTR ERVL -14 507 411 237 139 0 0 chr3 7382817 7382853 -210654305 - LTR33 LTR ERVL -483 38 3 712 215 135 35 chr3 7383402 7383602 -210653556 - MIR SINE MIR 0 262 43 299 275 142 8 chr3 7383806 7383926 -210653232 - L2 LINE L2 -214 3058 2923 871 200 62 19 chr3 7384398 7384608 -210652550 + MER20 DNA MER1_type 1 219 0 23 0 0 0 chr3 7385142 7385165 -210651993 + AT_rich Low_complexity Low_complexity 1 23 0 571 229 41 0 chr3 7385165 7385287 -210651871 - FLAM_A SINE Alu -6 127 1 25 0 0 0 chr3 7386597 7386622 -210650536 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 7387209 7387230 -210649928 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 7387700 7387721 -210649437 + AT_rich Low_complexity Low_complexity 1 21 0 2111 109 0 3 chr3 7389389 7389693 -210647465 - AluSx SINE Alu -6 306 4 690 210 50 22 chr3 7390017 7390198 -210646960 + MIR SINE MIR 28 213 -49 330 296 111 19 chr3 7390281 7390443 -210646715 + MIR SINE MIR 19 195 -67 273 109 0 0 chr3 7390708 7390754 -210646404 + (TG)n Simple_repeat Simple_repeat 1 46 0 3106 123 115 17 chr3 7390934 7391523 -210645635 - LTR24C LTR ERV1 -1 594 2 2018 213 164 41 chr3 7392101 7392574 -210644584 - Charlie2a DNA MER1_type -144 2718 2305 2215 115 0 3 chr3 7392574 7392886 -210644272 - AluJo SINE Alu -1 311 1 2018 213 164 41 chr3 7392886 7393295 -210643863 - Charlie2a DNA MER1_type -557 2305 1727 2335 124 48 3 chr3 7393298 7393669 -210643489 - Tigger2 DNA MER2_type 0 2718 2331 321 100 0 0 chr3 7393675 7393725 -210643433 + (TG)n Simple_repeat Simple_repeat 2 51 0 749 221 0 0 chr3 7393727 7393872 -210643286 - AluSg/x SINE Alu -31 281 137 2140 153 103 7 chr3 7393878 7394303 -210642855 - Tigger2 DNA MER2_type -2252 466 1 801 250 35 0 chr3 7394303 7394503 -210642655 - Charlie2a DNA MER1_type -1136 1726 1520 * 2634 80 33 145 chr3 7394498 7394701 -210642457 - MER39B LTR ERV1 -200 453 229 772 191 8 0 chr3 7394701 7394858 -210642300 - FLAM_C SINE Alu 0 158 1 2634 80 33 145 chr3 7394858 7394903 -210642255 - MER39B LTR ERV1 -424 229 181 930 113 0 0 chr3 7394903 7395027 -210642131 - FLAM_C SINE Alu -9 124 1 2634 80 33 145 chr3 7395027 7395286 -210641872 - MER39B LTR ERV1 -472 181 1 1211 140 45 0 chr3 7395561 7395761 -210641397 + L1MA5A LINE L1 6085 6293 -4 2087 107 7 3 chr3 7395909 7396200 -210640958 - AluSq SINE Alu -21 292 1 911 176 23 0 chr3 7396391 7396567 -210640591 + FRAM SINE Alu 1 175 -1 479 233 133 13 chr3 7397021 7397171 -210639987 + MIR SINE MIR 21 188 -74 520 171 202 0 chr3 7397691 7397820 -210639338 + MER5A DNA MER1_type 6 160 -29 2654 123 31 2 chr3 7398060 7398476 -210638682 + MSTA LTR MaLR 1 428 0 292 225 113 0 chr3 7398493 7398564 -210638594 - L2 LINE L2 0 3272 3194 261 225 0 0 chr3 7398579 7398668 -210638490 + (TAAA)n Simple_repeat Simple_repeat 2 90 0 798 267 89 71 chr3 7398886 7399213 -210637945 + MLT1K LTR MaLR 126 463 -125 3517 128 4 28 chr3 7399213 7399753 -210637405 + MER1A DNA MER1_type 1 527 0 798 267 89 71 chr3 7399753 7399818 -210637340 + MLT1K LTR MaLR 463 525 -63 402 216 43 126 chr3 7400856 7400960 -210636198 - MER106A DNA MER1_type -2 234 123 691 228 0 0 chr3 7400960 7401083 -210636075 - FLAM_A SINE Alu -10 123 1 402 216 43 126 chr3 7401083 7401233 -210635925 - MER106A DNA MER1_type -113 123 1 476 207 122 49 chr3 7401233 7401397 -210635761 - MIR SINE MIR -17 245 70 730 292 142 14 chr3 7401514 7401795 -210635363 - MER77 LTR ERV1 -11 594 278 180 0 0 0 chr3 7401796 7401816 -210635342 + (ATTG)n Simple_repeat Simple_repeat 1 20 0 2339 152 6 0 chr3 7401824 7402160 -210634998 - MER1B DNA MER1_type -1 338 1 240 188 277 0 chr3 7402160 7402261 -210634897 - MER77 LTR ERV1 -333 272 144 836 155 39 19 chr3 7402327 7402482 -210634676 + MLT1D LTR MaLR 329 486 -19 269 361 28 24 chr3 7402477 7402690 -210634468 + AluJo SINE Alu 32 245 -57 * 239 184 118 0 chr3 7402921 7402997 -210634161 - MER77 LTR ERV1 -377 228 144 781 160 40 20 chr3 7403063 7403213 -210633945 + MLT1D LTR MaLR 329 481 -24 1653 158 0 0 chr3 7403213 7403473 -210633685 + AluJo SINE Alu 32 291 -21 281 358 9 18 chr3 7403523 7403632 -210633526 - MIR SINE MIR -141 121 14 2103 104 3 0 chr3 7403713 7404000 -210633158 - AluSq SINE Alu -25 288 1 385 229 99 15 chr3 7404385 7404516 -210632642 - LTR16A1 LTR ERVL -3 454 313 234 220 20 140 chr3 7404631 7404731 -210632427 - LTR16A1 LTR ERVL -350 107 20 1000 251 127 39 chr3 7405330 7405607 -210631551 + MLT1F1 LTR MaLR 104 415 -152 1573 122 80 0 chr3 7405607 7405844 -210631314 - AluSx SINE Alu -13 299 44 1000 251 127 39 chr3 7405844 7406011 -210631147 + MLT1F1 LTR MaLR 415 566 -1 536 145 0 0 chr3 7406281 7406357 -210630801 - FRAM/FAM SINE Alu -102 74 1 25 0 0 0 chr3 7407664 7407689 -210629469 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 7408765 7408786 -210628372 + AT_rich Low_complexity Low_complexity 1 21 0 2107 107 0 3 chr3 7410454 7410753 -210626405 - AluSx SINE Alu -11 301 4 682 210 50 22 chr3 7411077 7411258 -210625900 + MIR SINE MIR 28 213 -49 330 296 111 19 chr3 7411341 7411503 -210625655 + MIR SINE MIR 19 195 -67 345 93 0 0 chr3 7411768 7411822 -210625336 + (TG)n Simple_repeat Simple_repeat 1 54 0 3104 125 115 17 chr3 7412002 7412591 -210624567 - LTR24C LTR ERV1 -1 594 2 1954 214 171 41 chr3 7413169 7413637 -210623521 - Charlie2a DNA MER1_type -144 2718 2312 2222 113 0 3 chr3 7413637 7413947 -210623211 - AluJo SINE Alu -3 309 1 1954 214 171 41 chr3 7413947 7414356 -210622802 - Charlie2a DNA MER1_type -550 2312 1727 2335 124 48 3 chr3 7414359 7414730 -210622428 - Tigger2 DNA MER2_type 0 2718 2331 228 35 0 0 chr3 7414736 7414765 -210622393 + (TG)n Simple_repeat Simple_repeat 1 29 0 766 216 0 0 chr3 7414775 7414923 -210622235 - AluSg/x SINE Alu -28 282 135 2157 156 104 5 chr3 7414929 7415353 -210621805 - Tigger2 DNA MER2_type -2252 466 1 802 238 31 36 chr3 7415353 7415576 -210621582 - Charlie2a DNA MER1_type -1136 1726 1505 * 2892 90 37 62 chr3 7415548 7415751 -210621407 - MER39B LTR ERV1 -200 453 246 958 194 105 112 chr3 7415751 7416082 -210621076 - AluSx SINE Alu 0 329 1 2892 90 37 62 chr3 7416082 7416341 -210620817 - MER39B LTR ERV1 -407 246 1 1224 135 45 0 chr3 7416616 7416816 -210620342 + L1MA5A LINE L1 6085 6293 -4 2057 113 7 3 chr3 7416964 7417255 -210619903 - AluSq SINE Alu -21 292 1 911 176 23 0 chr3 7417446 7417622 -210619536 + FRAM SINE Alu 1 175 -1 479 233 133 13 chr3 7418076 7418226 -210618932 + MIR SINE MIR 21 188 -74 520 171 202 0 chr3 7418746 7418875 -210618283 + MER5A DNA MER1_type 6 160 -29 2670 120 31 2 chr3 7419115 7419531 -210617627 + MSTA LTR MaLR 1 428 0 292 225 113 0 chr3 7419548 7419619 -210617539 - L2 LINE L2 0 3272 3194 290 216 0 18 chr3 7419634 7419745 -210617413 + (TAAA)n Simple_repeat Simple_repeat 2 110 0 798 267 89 71 chr3 7419963 7420290 -210616868 + MLT1K LTR MaLR 126 463 -125 3531 126 4 28 chr3 7420290 7420830 -210616328 + MER1A DNA MER1_type 1 527 0 798 267 89 71 chr3 7420830 7420895 -210616263 + MLT1K LTR MaLR 463 525 -63 669 227 0 0 chr3 7422037 7422156 -210615002 - FLAM_A SINE Alu -10 123 5 266 333 11 0 chr3 7422726 7422816 -210614342 + MLT1F1 LTR MaLR 5 95 -498 1011 243 109 76 chr3 7422938 7423215 -210613943 + MLT1F1 LTR MaLR 104 406 -161 1506 136 81 0 chr3 7423215 7423451 -210613707 - AluSx SINE Alu -14 298 44 1011 243 109 76 chr3 7423451 7423618 -210613540 + MLT1F1 LTR MaLR 406 566 -1 299 269 172 27 chr3 7423651 7423837 -210613321 - L1ME4a LINE L1 -227 5894 5682 2563 40 0 0 chr3 7423845 7424147 -210613011 + AluYb8 SINE Alu 1 302 -16 1172 98 0 0 chr3 7424147 7424310 -210612848 + AluYa5 SINE Alu 133 295 -16 1960 154 0 0 chr3 7424336 7424635 -210612523 + AluSx SINE Alu 1 299 -13 794 254 11 0 chr3 7424895 7425072 -210612086 - MER5A DNA MER1_type -8 181 3 333 295 19 9 chr3 7425445 7425550 -210611608 + MLT1K LTR MaLR 477 582 -6 278 301 68 62 chr3 7426321 7426438 -210610720 - L2 LINE L2 -1 3312 3192 354 23 0 0 chr3 7426438 7426481 -210610677 + (GA)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7426481 7426509 -210610649 - L2 LINE L2 -121 3192 3166 948 236 75 77 chr3 7426538 7426991 -210610167 + MER110A LTR ERV1 3 454 -14 459 0 0 0 chr3 7427109 7427160 -210609998 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2083 100 4 0 chr3 7427163 7427443 -210609715 - AluSx SINE Alu -30 282 2 2401 59 0 3 chr3 7427452 7427756 -210609402 - AluY SINE Alu -8 303 1 283 301 67 46 chr3 7427825 7428064 -210609094 - L2 LINE L2 -337 2977 2734 661 228 39 22 chr3 7428275 7428455 -210608703 - MER3 DNA MER1_type -26 183 1 919 56 17 39 chr3 7429081 7429339 -210607819 + (CA)n Simple_repeat Simple_repeat 1 252 0 585 144 40 0 chr3 7429526 7429651 -210607507 + GA-rich Low_complexity Low_complexity 1 130 0 1935 209 30 26 chr3 7429655 7430085 -210607073 + MLT1C LTR MaLR 36 467 0 1125 185 0 4 chr3 7430106 7430333 -210606825 - AluJo SINE Alu 0 312 87 2148 109 0 0 chr3 7430348 7430641 -210606517 - AluSg SINE Alu -15 295 3 411 246 0 51 chr3 7430644 7430762 -210606396 - FLAM_A SINE Alu -4 138 27 9613 40 27 94 chr3 7430900 7432423 -210604735 + SVA Other Other 1 1625 -440 1955 147 0 3 chr3 7432423 7432735 -210604423 + AluSq SINE Alu 1 311 -2 2186 116 0 0 chr3 7432737 7433048 -210604110 + AluSx SINE Alu 1 311 -1 9613 40 27 94 chr3 7433048 7433065 -210604093 + SVA Other Other 1626 2065 0 847 81 16 0 chr3 7433068 7433191 -210603967 + FLAM_C SINE Alu 1 125 -18 1544 199 28 0 chr3 7433202 7433484 -210603674 - MER63B DNA MER1_type -146 290 1 22 0 0 0 chr3 7433515 7433537 -210603621 + AT_rich Low_complexity Low_complexity 1 22 0 1797 162 0 9 chr3 7433662 7433977 -210603181 - AluSx SINE Alu 0 312 1 718 233 43 0 chr3 7433982 7434145 -210603013 + MIR SINE MIR 61 230 -32 533 215 15 8 chr3 7434147 7434277 -210602881 + AluSq/x SINE Alu 3 133 -180 274 125 31 42 chr3 7434354 7434450 -210602708 + A-rich Low_complexity Low_complexity 2 96 0 297 244 29 52 chr3 7434450 7434622 -210602536 + GA-rich Low_complexity Low_complexity 5 172 0 278 149 21 0 chr3 7435023 7435070 -210602088 - Charlie8 DNA MER1_type -1006 1411 1364 2028 123 3 0 chr3 7435142 7435442 -210601716 - AluSx SINE Alu -11 301 1 476 257 141 84 chr3 7435689 7435883 -210601275 + L1ME4a LINE L1 5631 5847 -274 1796 135 7 0 chr3 7435883 7436164 -210600994 - AluSg SINE Alu -15 295 13 476 257 141 84 chr3 7436164 7436253 -210600905 + L1ME4a LINE L1 5847 5930 -191 279 180 16 141 chr3 7436310 7436438 -210600720 - MLT1H LTR MaLR 0 549 438 1481 196 70 40 chr3 7436865 7437141 -210600017 + L1MC/D LINE L1 4789 5082 -1064 2158 110 0 10 chr3 7437141 7437450 -210599708 - AluSx SINE Alu -1 311 6 1481 196 70 40 chr3 7437450 7437575 -210599583 + L1MC/D LINE L1 5082 5202 -944 959 209 60 18 chr3 7437575 7437857 -210599301 + AluSx SINE Alu 1 294 -8 415 236 183 21 chr3 7438212 7438403 -210598755 + L1MC/D LINE L1 5296 5517 -2291 1629 75 0 0 chr3 7438445 7438658 -210598500 - AluSg SINE Alu -97 213 1 249 109 455 0 chr3 7439109 7439164 -210597994 - MADE1 DNA Mariner 0 80 1 1745 149 35 0 chr3 7439553 7439669 -210597489 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 7439669 7439715 -210597443 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1745 149 35 0 chr3 7439715 7439886 -210597272 + AluSx SINE Alu 112 298 -14 889 236 106 24 chr3 7440215 7440507 -210596651 - L2 LINE L2 -429 2885 2570 1703 161 7 20 chr3 7440536 7440834 -210596324 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 7440837 7440860 -210596298 + (TA)n Simple_repeat Simple_repeat 2 24 0 235 328 12 58 chr3 7441977 7442080 -210595078 - MIR SINE MIR -63 145 68 638 230 15 0 chr3 7443505 7443640 -210593518 + MER3 DNA MER1_type 2 138 -71 2030 129 0 19 chr3 7443646 7443957 -210593201 + AluSg SINE Alu 1 305 -5 210 358 0 0 chr3 7444226 7444293 -210592865 - L2 LINE L2 -1 3271 3205 328 327 58 13 chr3 7444430 7444586 -210592572 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 7444627 7444660 -210592498 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 502 188 240 19 chr3 7444838 7444992 -210592166 - MER53 DNA DNA 0 189 2 2222 98 7 0 chr3 7445252 7445559 -210591599 - AluSp SINE Alu -4 309 1 335 212 161 25 chr3 7445829 7445947 -210591211 - L2 LINE L2 -10 3303 3170 1824 122 15 0 chr3 7446194 7446465 -210590693 - AluSx SINE Alu -24 288 14 860 153 127 0 chr3 7446515 7446665 -210590493 + MER6B DNA MER2_type 37 205 -5 1821 192 68 21 chr3 7446948 7447376 -210589782 - MLT1C LTR MaLR -2 465 18 2039 125 0 3 chr3 7447605 7447909 -210589249 - AluSx SINE Alu -9 303 1 1071 149 123 0 chr3 7448200 7448395 -210588763 + MER20 DNA MER1_type 1 219 0 2121 103 7 0 chr3 7448835 7449135 -210588023 - AluSp SINE Alu -11 302 1 281 87 0 43 chr3 7449747 7449793 -210587365 - L2 LINE L2 -75 3238 3195 419 175 0 25 chr3 7450132 7450212 -210586946 - MER65A LTR ERV1 -333 112 35 506 81 0 0 chr3 7450213 7450287 -210586871 + Alu SINE Alu 229 302 -10 2036 99 3 11 chr3 7450296 7450579 -210586579 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7450582 7450633 -210586525 + (CATA)n Simple_repeat Simple_repeat 2 52 0 934 238 75 77 chr3 7450751 7451204 -210585954 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7451233 7451261 -210585897 + L2 LINE L2 3166 3192 -121 318 26 0 0 chr3 7451261 7451300 -210585858 + (TC)n Simple_repeat Simple_repeat 2 40 0 278 301 68 62 chr3 7451300 7451417 -210585741 + L2 LINE L2 3192 3312 -1 291 263 25 12 chr3 7452212 7452292 -210584866 - MLT1K LTR MaLR -31 557 477 794 254 11 0 chr3 7452665 7452842 -210584316 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7453102 7453401 -210583757 - AluSx SINE Alu -13 299 1 1198 96 0 0 chr3 7453427 7453593 -210583565 - AluYa5 SINE Alu -13 298 133 2563 40 0 0 chr3 7453593 7453895 -210583263 - AluYb8 SINE Alu -16 302 1 293 269 172 27 chr3 7453903 7454089 -210583069 + L1ME4a LINE L1 5682 5894 -227 1000 251 127 39 chr3 7454122 7454289 -210582869 - MLT1F1 LTR MaLR -1 566 415 1573 122 80 0 chr3 7454289 7454526 -210582632 + AluSx SINE Alu 44 299 -13 1000 251 127 39 chr3 7454526 7454803 -210582355 - MLT1F1 LTR MaLR -152 415 104 266 333 11 0 chr3 7454925 7455015 -210582143 - MLT1F1 LTR MaLR -498 95 5 234 220 20 140 chr3 7455402 7455502 -210581656 + LTR16A1 LTR ERVL 20 107 -350 385 229 99 15 chr3 7455617 7455748 -210581410 + LTR16A1 LTR ERVL 313 454 -3 2077 113 0 7 chr3 7456133 7456433 -210580725 + AluSq SINE Alu 1 298 -15 185 0 0 39 chr3 7456534 7456560 -210580598 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 198 192 154 19 chr3 7456647 7456699 -210580459 + L2 LINE L2 3252 3310 -3 2147 97 0 3 chr3 7456719 7457008 -210580150 + AluSx SINE Alu 1 288 -24 315 207 0 73 chr3 7458138 7458220 -210578938 + AluSg/x SINE Alu 171 246 -56 1067 201 0 4 chr3 7458225 7458454 -210578704 + AluSg/x SINE Alu 85 312 0 231 307 86 57 chr3 7458470 7458610 -210578548 - L2 LINE L2 -2 3311 3168 254 324 102 25 chr3 7458646 7458877 -210578281 - L2 LINE L2 -276 3037 2791 373 217 43 7 chr3 7458884 7459022 -210578136 + (TA)n Simple_repeat Simple_repeat 1 143 0 29 0 0 0 chr3 7459058 7459087 -210578071 + AT_rich Low_complexity Low_complexity 1 29 0 702 75 0 0 chr3 7459116 7459210 -210577948 - L1PA5 LINE L1 0 6154 6061 624 219 14 0 chr3 7459236 7459382 -210577776 - L1MA10 LINE L1 -13 6321 6174 1887 137 14 0 chr3 7459383 7459675 -210577483 + AluJo SINE Alu 1 296 -16 503 259 45 58 chr3 7459675 7459918 -210577240 - L1MD2 LINE L1 -139 6027 5788 282 297 14 109 chr3 7459961 7460099 -210577059 + MIR SINE MIR 32 156 -106 399 293 73 44 chr3 7460770 7460975 -210576183 + MIR SINE MIR 31 241 -21 242 116 23 0 chr3 7461034 7461077 -210576081 + (TG)n Simple_repeat Simple_repeat 2 45 0 891 266 129 6 chr3 7461177 7461511 -210575647 + L3 LINE CR1 1161 1535 -42 288 0 0 0 chr3 7461664 7461696 -210575462 + (T)n Simple_repeat Simple_repeat 1 32 0 359 203 100 144 chr3 7461779 7462050 -210575108 - MLT1K LTR MaLR 0 588 330 1306 194 0 68 chr3 7462179 7462503 -210574655 + AluJo SINE Alu 1 302 -10 1958 126 0 3 chr3 7462505 7462790 -210574368 + AluSx SINE Alu 1 284 -28 222 37 0 0 chr3 7462790 7462817 -210574341 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 592 326 84 45 chr3 7462934 7463453 -210573705 + L2 LINE L2 2684 3260 -12 827 213 38 85 chr3 7464161 7464287 -210572871 + MIR SINE MIR 29 140 -122 1901 117 40 0 chr3 7464287 7464585 -210572573 - AluSx SINE Alu -2 310 1 827 213 38 85 chr3 7464585 7464693 -210572465 + MIR SINE MIR 140 252 -10 274 171 157 14 chr3 7464798 7464868 -210572290 - L2 LINE L2 -5 3308 3229 1947 113 15 95 chr3 7465019 7465365 -210571793 - L1PBa LINE L1 -4936 1927 1617 2048 115 0 29 chr3 7465365 7465678 -210571480 - AluSx SINE Alu -8 304 1 1947 113 15 95 chr3 7465678 7465740 -210571418 - L1PBa LINE L1 -5246 1617 1552 580 343 18 14 chr3 7465958 7466177 -210570981 + MIR SINE MIR 42 261 -1 251 295 67 0 chr3 7466235 7466340 -210570818 + L1ME4a LINE L1 6010 6121 0 2451 52 0 3 chr3 7466516 7466826 -210570332 + AluY SINE Alu 1 309 -2 1130 126 32 24 chr3 7466826 7467166 -210569992 + MER49 LTR ERV1 160 534 -389 2218 106 3 0 chr3 7467167 7467478 -210569680 - AluSx SINE Alu 0 312 1 1005 86 0 7 chr3 7467480 7467619 -210569539 - AluYb8 SINE Alu -180 138 1 1274 228 59 62 chr3 7467621 7467715 -210569443 + MER49 LTR ERV1 521 614 -309 1993 139 3 3 chr3 7467715 7468025 -210569133 - AluSx SINE Alu -2 310 1 1274 228 59 62 chr3 7468025 7468334 -210568824 + MER49 LTR ERV1 614 923 0 268 152 30 0 chr3 7468443 7468509 -210568649 + (TGAA)n Simple_repeat Simple_repeat 3 70 0 2275 121 0 0 chr3 7519148 7519446 -210517712 + AluSg SINE Alu 1 298 -12 607 301 98 25 chr3 7519454 7519977 -210517181 - L1M4 LINE L1 -813 5333 4775 228 300 90 0 chr3 7520983 7521083 -210516075 + MIR SINE MIR 120 228 -34 450 219 15 88 chr3 7521265 7521402 -210515756 - MIR SINE MIR -101 161 35 1594 112 5 5 chr3 7521415 7521639 -210515519 - AluSq SINE Alu -22 291 68 293 303 13 0 chr3 7521800 7521876 -210515282 + L2 LINE L2 3192 3268 -4 239 319 96 0 chr3 7521977 7522071 -210515087 - L3 LINE CR1 -393 1184 1082 7686 102 26 4 chr3 7523500 7524647 -210512511 - L1P LINE L1 -3314 2832 1661 231 227 252 34 chr3 7525057 7525176 -210511982 + MER5A DNA MER1_type 30 185 -4 578 223 141 0 chr3 7525192 7525352 -210511806 - MER5A DNA MER1_type 0 189 4 238 207 132 0 chr3 7525602 7525723 -210511435 + AluSg SINE Alu 2 138 -162 520 201 60 148 chr3 7526484 7526802 -210510356 + MER102b DNA MER1_type 52 341 0 827 187 66 28 chr3 7528069 7528251 -210508907 - MER5A DNA MER1_type 0 189 1 936 157 40 0 chr3 7529127 7529304 -210507854 - L1MB7 LINE L1 -183 6001 5814 182 283 130 22 chr3 7530740 7530832 -210506326 - L2 LINE L2 -21 3292 3191 2883 188 48 24 chr3 7532370 7533254 -210503904 + L1MA9 LINE L1 4848 5901 -411 289 247 81 86 chr3 7534768 7534954 -210502204 + L1ME LINE L1 5634 5818 -303 382 288 18 9 chr3 7535201 7535312 -210501846 - MIR SINE MIR -90 172 61 190 348 158 19 chr3 7535352 7535510 -210501648 + MIR3 SINE MIR 16 195 -13 221 398 0 0 chr3 7536208 7536296 -210500862 - MIR SINE MIR -55 153 66 217 334 88 0 chr3 7536971 7537107 -210500051 - MIR SINE MIR -63 145 45 381 253 22 0 chr3 7537170 7537261 -210499897 - MER5A DNA MER1_type -88 101 9 457 308 14 20 chr3 7538042 7538188 -210498970 + MIR3 SINE MIR 40 184 -24 342 270 41 0 chr3 7539045 7539171 -210497987 + MLT1J2 LTR MaLR 65 233 -278 320 275 102 23 chr3 7539849 7540055 -210497103 + MIR SINE MIR 9 225 -37 260 253 48 48 chr3 7540124 7540207 -210496951 + L2 LINE L2 3231 3313 0 843 271 76 15 chr3 7540298 7540724 -210496434 - MARNA DNA Mariner -33 553 70 328 264 174 0 chr3 7541262 7541383 -210495775 - MIR SINE MIR -62 200 59 640 345 47 14 chr3 7543628 7543924 -210493234 + L2 LINE L2 2654 2959 -355 2073 139 34 28 chr3 7544619 7544971 -210492187 - MSTB1 LTR MaLR 0 432 79 356 289 91 54 chr3 7545277 7545519 -210491639 + L1ME4a LINE L1 5778 6028 -93 1500 181 0 40 chr3 7545585 7545862 -210491296 - AluJo SINE Alu -17 295 30 1197 94 0 50 chr3 7546824 7547004 -210490154 + AluSq SINE Alu 143 313 0 494 296 78 4 chr3 7547154 7547602 -210489556 - L1ME4a LINE L1 -32 6089 5572 190 277 0 0 chr3 7547680 7547727 -210489431 - L2 LINE L2 0 3313 3267 586 237 194 0 chr3 7548095 7548281 -210488877 + MIR SINE MIR 11 232 -30 470 278 17 56 chr3 7548918 7549098 -210488060 - MER5B DNA MER1_type -2 176 4 350 258 0 22 chr3 7549098 7549185 -210487973 - MER5B DNA MER1_type -93 85 1 827 187 66 28 chr3 7549835 7550017 -210487141 - MER5A DNA MER1_type 0 189 1 1082 231 50 30 chr3 7550850 7551148 -210486010 + LTR40b LTR ERVL 1 304 -158 2072 123 20 0 chr3 7551161 7551461 -210485697 + AluSx SINE Alu 1 306 -6 371 159 16 0 chr3 7551464 7551527 -210485631 + LTR40a LTR ERVL 451 514 -5 247 281 148 39 chr3 7551669 7551797 -210485361 + L2 LINE L2 3171 3312 -1 1048 269 114 43 chr3 7551824 7552244 -210484914 - LTR16A LTR ERVL 0 450 1 2167 189 3 6 chr3 7552295 7552661 -210484497 - MLT1A1 LTR MaLR 0 365 1 1991 139 0 0 chr3 7552745 7553026 -210484132 - AluSx SINE Alu -19 293 13 4100 155 22 24 chr3 7553166 7553889 -210483269 + L1MA10 LINE L1 5602 6323 -11 378 351 73 71 chr3 7553966 7554352 -210482806 + L2 LINE L2 2838 3227 -45 1527 226 57 28 chr3 7554352 7554776 -210482382 - MER63B DNA MER1_type 0 436 1 378 351 73 71 chr3 7554776 7554814 -210482344 + L2 LINE L2 3227 3263 -9 2176 126 10 0 chr3 7555714 7556023 -210481135 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 7556173 7556194 -210480964 + AT_rich Low_complexity Low_complexity 1 21 0 218 222 111 0 chr3 7556440 7556485 -210480673 - L2 LINE L2 -3 3269 3220 584 290 109 62 chr3 7556715 7557118 -210480040 - MLT1K LTR MaLR -126 462 41 185 344 16 0 chr3 7557134 7557198 -210479960 - L2 LINE L2 -237 3035 2971 475 280 126 6 chr3 7559456 7559631 -210477527 + L2 LINE L2 3112 3307 -6 241 347 74 34 chr3 7559657 7559833 -210477325 - MIR SINE MIR -20 242 60 455 337 63 0 chr3 7560036 7560211 -210476947 - MIR SINE MIR -41 221 36 467 360 35 19 chr3 7560289 7560550 -210476608 + L3 LINE CR1 967 1231 -346 683 298 37 16 chr3 7560645 7560890 -210476268 + MIR SINE MIR 13 262 0 190 292 188 21 chr3 7561090 7561186 -210475972 - MIR SINE MIR -67 141 30 990 316 104 23 chr3 7561373 7562096 -210475062 + L2 LINE L2 2499 3308 -5 2380 88 0 28 chr3 7562899 7563217 -210473941 + AluY SINE Alu 1 309 -2 22 56 0 0 chr3 7563482 7563518 -210473640 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7563528 7563551 -210473607 + AT_rich Low_complexity Low_complexity 1 23 0 270 231 0 0 chr3 7564369 7564434 -210472724 + (TA)n Simple_repeat Simple_repeat 1 65 0 190 355 0 0 chr3 7564434 7564496 -210472662 + L2 LINE L2 2920 2981 -291 329 223 117 21 chr3 7564543 7564637 -210472521 + MER5A DNA MER1_type 31 133 -56 258 213 0 0 chr3 7564990 7565037 -210472121 + L2 LINE L2 3257 3303 -10 2177 146 8 11 chr3 7565141 7565503 -210471655 + MLT1A1 LTR MaLR 5 365 0 398 286 0 0 chr3 7565567 7565665 -210471493 + L2 LINE L2 3173 3270 -2 323 283 43 11 chr3 7566211 7566303 -210470855 + MIR SINE MIR 118 212 -50 24 0 0 0 chr3 7567838 7567862 -210469296 + AT_rich Low_complexity Low_complexity 1 24 0 266 244 26 0 chr3 7567992 7568070 -210469088 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 777 211 93 45 chr3 7568573 7568819 -210468339 + MIR SINE MIR 5 262 0 823 195 23 45 chr3 7570209 7570430 -210466728 + MER20 DNA MER1_type 2 217 -2 249 258 305 0 chr3 7571243 7571371 -210465787 - MIR SINE MIR -45 217 51 2582 238 30 20 chr3 7571567 7572211 -210464947 + MER82 DNA MER2_type 1 650 -3 687 178 103 23 chr3 7572614 7572788 -210464370 + MER5A DNA MER1_type 2 189 0 3882 168 14 3 chr3 7573320 7574016 -210463142 + MER50 LTR ERV1 7 710 -24 210 294 147 29 chr3 7574024 7574126 -210463032 - L2 LINE L2 -40 3273 3160 283 319 120 15 chr3 7575508 7575756 -210461402 - L3 LINE CR1 -15 1562 1238 2059 131 0 7 chr3 7576116 7576413 -210460745 - AluSx SINE Alu -17 295 1 991 204 125 14 chr3 7576769 7577048 -210460110 - LTR2 LTR ERV1 0 449 140 244 298 145 8 chr3 7577079 7577210 -210459948 - LTR2 LTR ERV1 -298 151 3 387 309 19 47 chr3 7577249 7577505 -210459653 - L2 LINE L2 -1037 2277 2029 280 258 34 34 chr3 7577596 7577685 -210459473 - L2 LINE L2 -1359 1955 1867 304 330 73 31 chr3 7578162 7578200 -210458958 + MIR SINE MIR 48 83 -179 2178 154 43 25 chr3 7578200 7578642 -210458516 - LTR7 LTR ERV1 0 450 1 304 330 73 31 chr3 7578642 7578794 -210458364 + MIR SINE MIR 83 246 -16 4952 214 18 33 chr3 7579518 7581545 -210455613 + L1PA8A LINE L1 3 2163 -4298 940 117 0 6 chr3 7581550 7581713 -210455445 + L1PA8A LINE L1 3634 3795 -2666 12574 110 5 7 chr3 7581760 7582559 -210454599 + L1PA8A LINE L1 3756 4555 -1891 2034 143 26 10 chr3 7582559 7582866 -210454292 + AluSx SINE Alu 1 312 0 12574 110 5 7 chr3 7582866 7584747 -210452411 + L1PA8A LINE L1 4555 6445 -1 1415 183 54 0 chr3 7584761 7585056 -210452102 + L1M2 LINE L1 5476 5786 -526 8343 54 7 0 chr3 7585241 7587073 -210450085 - L1PA5 LINE L1 -3 6151 4304 5958 90 2 15 chr3 7587338 7588224 -210448934 + L1PA10 LINE L1 5291 6165 -3 1494 174 14 88 chr3 7588308 7588732 -210448426 + MLT2D LTR ERVL 5 377 -20 256 259 0 0 chr3 7588739 7588797 -210448361 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 258 100 50 0 chr3 7588801 7588841 -210448317 + MLT2D LTR ERVL 367 408 -6 649 278 40 48 chr3 7588846 7589094 -210448064 - MIR SINE MIR -10 252 7 290 146 0 18 chr3 7589670 7589725 -210447433 - L1ME LINE L1 -476 5645 5592 381 238 42 35 chr3 7589842 7590101 -210447057 + MLT1I LTR MaLR 95 399 -10 956 287 89 0 chr3 7590336 7590751 -210446407 - L1MC4a LINE L1 -1862 5946 5495 508 272 101 68 chr3 7590768 7591245 -210445913 - L1MC4a LINE L1 -1684 4462 3947 8036 214 17 7 chr3 7591626 7593578 -210443580 - L1P LINE L1 -1361 4785 2814 21264 32 20 1 chr3 7593589 7596968 -210440190 - L1PA4 LINE L1 -6 6149 2719 2520 38 0 0 chr3 7596968 7597288 -210439870 - L1P LINE L1 -1003 5143 4824 7811 102 29 6 chr3 7597292 7599275 -210437883 - L1PA7 LINE L1 -3 6466 4451 10397 98 7 0 chr3 7599278 7600773 -210436385 - L1PA7 LINE L1 -4812 1649 145 3342 203 20 12 chr3 7600771 7601519 -210435639 - L1PA13 LINE L1 -4803 1984 1231 * 227 321 9 0 chr3 7601557 7601666 -210435492 - L1PA12 LINE L1 -5279 2302 2193 227 335 29 61 chr3 7602512 7602757 -210434401 - L1PA12 LINE L1 -7202 379 143 724 286 152 47 chr3 7602788 7603474 -210433684 - L1M4 LINE L1 -3113 3033 2276 2329 104 3 0 chr3 7603475 7603773 -210433385 - AluSx SINE Alu -13 299 1 214 264 28 14 chr3 7603918 7603990 -210433168 + (CTA)n Simple_repeat Simple_repeat 2 74 0 341 366 42 0 chr3 7605482 7605624 -210431534 + MIR SINE MIR 86 233 -29 512 260 0 0 chr3 7605639 7605762 -210431396 + Tigger3(Golem) DNA MER2_type 3 125 -2904 288 103 39 39 chr3 7605759 7605837 -210431321 + Tigger3(Golem) DNA MER2_type 2483 2560 -469 * 711 176 11 102 chr3 7605844 7606031 -210431127 + FRAM SINE Alu 2 171 -5 2784 131 7 13 chr3 7606031 7606482 -210430676 + Tigger3(Golem) DNA MER2_type 2581 3028 -1 27 49 0 0 chr3 7606602 7606643 -210430515 + AT_rich Low_complexity Low_complexity 1 41 0 540 45 0 0 chr3 7607387 7607454 -210429704 + (TA)n Simple_repeat Simple_repeat 2 68 0 696 184 0 17 chr3 7607502 7607727 -210429431 - AluJb SINE Alu -1 311 1 2089 147 81 18 chr3 7607880 7608275 -210428883 - MSTA LTR MaLR -4 424 5 231 294 172 12 chr3 7608388 7608551 -210428607 - MIR SINE MIR -11 251 63 2192 126 3 0 chr3 7608634 7608935 -210428223 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr3 7609195 7609223 -210427935 + AT_rich Low_complexity Low_complexity 1 28 0 568 148 56 0 chr3 7609359 7609467 -210427691 - L1MA9 LINE L1 -4 6308 6195 2050 178 76 4 chr3 7609469 7609941 -210427217 - L1MA8 LINE L1 -5 6286 5781 348 262 0 0 chr3 7609941 7610044 -210427114 + (TA)n Simple_repeat Simple_repeat 1 103 0 226 211 0 0 chr3 7610045 7610097 -210427061 - L1MC4 LINE L1 -1339 6703 6652 286 342 0 0 chr3 7610097 7610176 -210426982 + (CATA)n Simple_repeat Simple_repeat 2 80 0 359 315 0 11 chr3 7610181 7610362 -210426796 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 591 293 0 0 chr3 7610378 7610706 -210426452 + (TA)n Simple_repeat Simple_repeat 1 328 0 183 366 0 0 chr3 7610732 7610907 -210426251 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 * 279 161 0 0 chr3 7610880 7610936 -210426222 + (CA)n Simple_repeat Simple_repeat 2 57 0 556 159 90 141 chr3 7610938 7611194 -210425964 - L1MA8 LINE L1 -513 5778 5543 569 276 75 10 chr3 7611304 7611711 -210425447 - L1 LINE L1 -2597 3549 3112 1369 176 82 34 chr3 7611886 7612331 -210424827 - LTR10A LTR ERV1 -79 530 1 189 303 13 26 chr3 7612471 7612547 -210424611 + MIR SINE MIR 188 262 0 4786 136 2 67 chr3 7613022 7613853 -210423305 - THE1C-int LTR MaLR -726 854 86 5644 75 13 1 chr3 7613853 7614610 -210422548 - MER4E LTR ERV1 0 766 1 4786 136 2 67 chr3 7614610 7614689 -210422469 - THE1C-int LTR MaLR -1494 86 3 1852 152 76 22 chr3 7614691 7615047 -210422111 - THE1C LTR MaLR 0 375 1 395 247 7 41 chr3 7615059 7615205 -210421953 + MER104 DNA Tc2 39 179 -1 297 309 166 7 chr3 7615366 7615505 -210421653 + MER91A DNA MER1_type 1 161 -35 432 337 96 33 chr3 7615764 7616253 -210420905 + MLT1K LTR MaLR 16 535 -53 264 314 0 10 chr3 7616377 7616479 -210420679 + CT-rich Low_complexity Low_complexity 2 102 0 208 280 178 37 chr3 7616887 7616994 -210420164 + L2 LINE L2 3192 3313 0 2534 140 24 2 chr3 7617339 7617752 -210419406 + MSTB LTR MaLR 3 424 -2 8137 185 44 9 chr3 7617754 7619349 -210417809 + MSTB-int LTR MaLR 1 1651 0 1971 170 78 18 chr3 7619351 7619751 -210417407 + MSTB LTR MaLR 3 426 0 3076 90 28 0 chr3 7619797 7620230 -210416928 - L1PA11 LINE L1 0 6174 5730 259 266 67 8 chr3 7621889 7621987 -210415171 + MIR SINE MIR 74 175 -68 1995 154 0 0 chr3 7622488 7622780 -210414378 + AluSx SINE Alu 1 292 -20 3434 48 0 0 chr3 7623114 7623529 -210413629 + L1PA7 LINE L1 5733 6147 -7 2099 119 30 0 chr3 7625325 7625628 -210411530 + AluSx SINE Alu 1 312 0 501 288 85 29 chr3 7625862 7626367 -210410791 + L1MC4a LINE L1 3877 4421 -1725 477 317 61 66 chr3 7626588 7626745 -210410413 + L1MC4a LINE L1 4733 4889 -1257 2270 99 3 0 chr3 7626745 7627039 -210410119 - AluSp SINE Alu -18 295 1 477 317 61 66 chr3 7627039 7627275 -210409883 + L1MC4a LINE L1 4889 5124 -1022 1067 273 90 56 chr3 7627422 7628081 -210409077 + L1MC4a LINE L1 5265 5819 -302 210 315 72 9 chr3 7629024 7629135 -210408023 - MIR SINE MIR 0 262 145 324 0 0 0 chr3 7629538 7629574 -210407584 + (A)n Simple_repeat Simple_repeat 1 36 0 10191 225 59 66 chr3 7629766 7634104 -210403054 - L1M2 LINE L1 -602 6710 2343 2343 164 50 7 chr3 7634104 7634542 -210402616 - MSTB2 LTR MaLR 0 457 1 960 203 31 22 chr3 7634542 7634769 -210402389 - MER46A DNA MER2_type -7 229 1 10191 225 59 66 chr3 7634769 7636077 -210401081 - L1M2 LINE L1 -4967 2345 1193 266 269 92 43 chr3 7636625 7636766 -210400392 - L2 LINE L2 -1 3312 3165 257 233 79 55 chr3 7637216 7637418 -210399740 - LTR33 LTR ERVL -16 505 299 292 303 42 7 chr3 7637529 7637671 -210399487 - LTR33 LTR ERVL -366 155 9 593 129 0 0 chr3 7637846 7637931 -210399227 - FLAM SINE Alu -19 124 40 259 225 0 38 chr3 7638037 7638117 -210399041 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 801 258 45 1 chr3 7640454 7640661 -210396497 - MIR SINE MIR -47 215 3 848 181 117 0 chr3 7641137 7641325 -210395833 - MER20 DNA MER1_type -2 217 8 264 200 0 0 chr3 7641648 7641733 -210395425 + CT-rich Low_complexity Low_complexity 1 85 0 3902 118 3 0 chr3 7642481 7643068 -210394090 + L1PA13 LINE L1 5562 6150 -13 1320 170 64 70 chr3 7643214 7643573 -210393585 + MLT1A1 LTR MaLR 1 357 -8 484 321 51 10 chr3 7643590 7643883 -210393275 + MLT1K LTR MaLR 262 566 -22 493 262 41 21 chr3 7644017 7644162 -210392996 + MIR SINE MIR 41 188 -74 340 293 118 7 chr3 7644343 7644514 -210392644 - MIR SINE MIR -62 146 1 187 246 35 35 chr3 7646479 7646536 -210390622 + MIR SINE MIR 96 152 -56 364 291 87 76 chr3 7646825 7647182 -210389976 - MLT1K LTR MaLR -87 501 141 192 40 0 0 chr3 7648412 7648437 -210388721 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 775 155 9 0 chr3 7648438 7648554 -210388604 - AluJb SINE Alu -193 119 3 782 226 59 44 chr3 7648668 7648872 -210388286 + MER63A DNA MER1_type 4 210 0 896 233 77 85 chr3 7649042 7649604 -210387554 - L1ME3A LINE L1 -5 6165 5609 297 244 111 84 chr3 7650203 7650428 -210386730 - L2 LINE L2 -218 3054 2824 934 187 16 5 chr3 7650906 7651093 -210386065 - MER5A DNA MER1_type 0 189 1 838 255 25 103 chr3 7651360 7651756 -210385402 + MLT1A1 LTR MaLR 1 365 0 565 231 28 66 chr3 7652291 7652331 -210384827 + MER5B DNA MER1_type 1 41 -137 2205 133 0 0 chr3 7652331 7652640 -210384518 + AluSg SINE Alu 1 309 -1 565 231 28 66 chr3 7652640 7652781 -210384377 + MER5B DNA MER1_type 41 175 -3 984 180 16 0 chr3 7652790 7652973 -210384185 + MER5A DNA MER1_type 1 186 -3 374 357 16 11 chr3 7652987 7653172 -210383986 - MER5A DNA MER1_type -3 186 1 257 338 101 36 chr3 7653208 7653347 -210383811 - MER5B DNA MER1_type -16 162 15 477 273 45 45 chr3 7654003 7654157 -210383001 - MIR3 SINE MIR -39 169 16 2113 236 50 12 chr3 7655094 7655612 -210381546 + MLT1F LTR MaLR 5 542 0 327 289 0 0 chr3 7655622 7655712 -210381446 + L2 LINE L2 3224 3313 0 740 267 61 17 chr3 7656003 7656445 -210380713 - LTR33 LTR ERVL -25 496 3 414 138 0 0 chr3 7656727 7656792 -210380366 + AluSc SINE Alu 236 300 -9 1293 165 117 26 chr3 7656796 7657105 -210380053 - THE1C LTR MaLR -38 337 1 538 320 46 25 chr3 7657264 7657461 -210379697 - L3 LINE CR1 -8 1569 1369 968 226 22 2 chr3 7657485 7657758 -210379400 - L1ME1 LINE L1 -177 5989 5712 271 246 67 15 chr3 7658197 7658331 -210378827 - L1MEd LINE L1 -5973 146 6 181 284 40 27 chr3 7659594 7659668 -210377490 - MIR3 SINE MIR -47 161 87 222 255 0 0 chr3 7659812 7659863 -210377295 - MIR SINE MIR -108 154 104 495 264 9 88 chr3 7659968 7660184 -210376974 - MIR SINE MIR -44 218 20 2432 198 49 12 chr3 7660197 7660788 -210376370 - MER90 LTR ERV1 -1 613 1 249 311 106 12 chr3 7660813 7660974 -210376184 - L2 LINE L2 -618 2696 2521 379 283 122 24 chr3 7662823 7663028 -210374130 - LTR16A LTR ERVL -6 444 220 848 237 45 0 chr3 7663484 7663682 -210373476 - MIR SINE MIR -40 222 16 685 278 34 1 chr3 7663710 7663938 -210373220 - MIR SINE MIR -13 249 16 854 136 220 5 chr3 7665439 7665630 -210371528 + MER46A DNA MER2_type 1 232 -4 1911 178 3 45 chr3 7665646 7665785 -210371373 + MLT1A1 LTR MaLR 3 146 -219 2149 26 56 4 chr3 7665785 7666089 -210371069 - AluY SINE Alu 0 318 1 1911 178 3 45 chr3 7666089 7666325 -210370833 + MLT1A1 LTR MaLR 146 363 -2 1826 177 20 3 chr3 7666807 7667112 -210370046 - AluSx SINE Alu -2 310 1 346 157 14 0 chr3 7667334 7667404 -210369754 + MLT2B3 LTR ERVL 1 71 -483 1587 189 129 55 chr3 7667497 7667948 -210369210 + MLT2B3 LTR ERVL 71 554 0 521 296 119 51 chr3 7668205 7668753 -210368405 - MLT1K LTR MaLR 0 588 4 720 284 92 42 chr3 7668967 7669424 -210367734 + LTR33 LTR ERVL 34 513 -8 246 295 52 75 chr3 7670250 7670423 -210366735 + MIR SINE MIR 14 182 -80 1162 204 8 17 chr3 7670538 7670773 -210366385 + MER8 DNA MER2_type 7 239 0 341 202 18 53 chr3 7671176 7671290 -210365868 - MER103 DNA DNA -49 117 8 484 243 110 12 chr3 7671656 7671829 -210365329 - MIR SINE MIR -1 261 72 993 258 57 6 chr3 7671841 7672155 -210365003 + MER58B DNA MER1_type 12 341 0 204 322 56 94 chr3 7673267 7673609 -210363549 - L2 LINE L2 -4 3268 2940 189 258 30 45 chr3 7673915 7673981 -210363177 + MIR SINE MIR 87 151 -57 10906 41 7 0 chr3 7673982 7676086 -210361072 + L1PA5 LINE L1 4027 6147 -7 512 208 16 0 chr3 7676088 7676213 -210360945 + (TATG)n Simple_repeat Simple_repeat 2 128 0 206 245 19 0 chr3 7676329 7676382 -210360776 + L2 LINE L2 3217 3270 -2 539 262 104 0 chr3 7677520 7677684 -210359474 + MIR SINE MIR 44 224 -38 616 241 6 6 chr3 7678876 7679034 -210358124 + MER20 DNA MER1_type 33 190 -29 40651 51 4 3 chr3 7679086 7685232 -210351926 - L1PA5 LINE L1 0 6154 7 756 98 91 0 chr3 7685232 7685364 -210351794 - L1P5 LINE L1 -543 5608 5465 873 133 0 67 chr3 7685364 7685544 -210351614 - MLT1B LTR MaLR -222 168 1 187 342 45 0 chr3 7685798 7685909 -210351249 + MIR SINE MIR 92 207 -55 2321 112 3 0 chr3 7686496 7686801 -210350357 + AluSq SINE Alu 1 306 -7 383 244 133 22 chr3 7687758 7687842 -210349316 - MIR SINE MIR -15 247 149 513 274 71 18 chr3 7687842 7688010 -210349148 - MER5B DNA MER1_type -1 177 1 15142 215 24 6 chr3 7688993 7694346 -210342812 + L1PA15 LINE L1 1357 6816 0 338 159 23 102 chr3 7694692 7694780 -210342378 - MIR3 SINE MIR -14 194 114 301 294 12 0 chr3 7695315 7695400 -210341758 + MIR SINE MIR 68 153 -109 527 374 29 3 chr3 7695749 7696089 -210341069 + L1MEc LINE L1 35 383 -6013 638 259 77 66 chr3 7696121 7696820 -210340338 + L1MEc LINE L1 942 1648 -4748 * 2659 247 84 15 chr3 7696810 7697318 -210339840 + L1MEc LINE L1 2244 2716 -3499 2470 99 42 11 chr3 7697318 7697671 -210339487 - THE1B LTR MaLR 0 364 1 2659 247 84 15 chr3 7697671 7698402 -210338756 + L1MEc LINE L1 2716 3568 -2647 590 125 38 109 chr3 7698412 7698547 -210338611 + L1MD3 LINE L1 7729 7849 -146 2421 97 0 0 chr3 7698547 7698855 -210338303 - AluY SINE Alu -3 308 1 590 125 38 109 chr3 7698855 7698903 -210338255 + L1MD3 LINE L1 7849 7899 -96 754 278 28 5 chr3 7698903 7699115 -210338043 + MER20 DNA MER1_type 1 217 -2 321 125 16 0 chr3 7699152 7699216 -210337942 + L1MD3 LINE L1 7931 7995 0 * 423 268 63 0 chr3 7699210 7699352 -210337806 + L1MEc LINE L1 3563 3713 -2502 241 65 87 0 chr3 7700401 7700447 -210336711 + CT-rich Low_complexity Low_complexity 1 50 0 1619 192 4 0 chr3 7700447 7700723 -210336435 - AluJb SINE Alu -1 311 35 665 247 26 115 chr3 7701673 7702021 -210335137 + MLT1A1 LTR MaLR 5 321 -44 481 236 214 25 chr3 7702080 7702356 -210334802 + MER41B LTR ERV1 100 297 -189 477 254 70 22 chr3 7702442 7702627 -210334531 + MER66B LTR ERV1 293 486 0 376 235 15 30 chr3 7703517 7703649 -210333509 + LTR16A1 LTR ERVL 307 436 -21 1867 146 21 0 chr3 7703798 7704086 -210333072 - AluSq SINE Alu -19 294 1 484 335 60 9 chr3 7704804 7705037 -210332121 - MIR SINE MIR -6 256 12 377 302 71 10 chr3 7705745 7706053 -210331105 + L1ME4a LINE L1 5594 5920 -201 309 261 15 97 chr3 7706070 7706155 -210331003 + L1ME4a LINE L1 5977 6049 -72 1670 149 40 7 chr3 7706155 7706430 -210330728 + AluJb SINE Alu 1 284 -28 309 261 15 97 chr3 7706430 7706478 -210330680 + L1ME4a LINE L1 6049 6099 -22 24 0 0 0 chr3 7706530 7706554 -210330604 + AT_rich Low_complexity Low_complexity 1 24 0 807 201 113 15 chr3 7706590 7706794 -210330364 + MER58A DNA MER1_type 1 224 0 299 237 52 0 chr3 7707116 7707213 -210329945 - HAL1b LINE L1 -502 846 745 573 266 75 90 chr3 7707224 7707600 -210329558 - HAL1b LINE L1 -912 436 67 2363 151 60 2 chr3 7708406 7708809 -210328349 + MSTB LTR MaLR 1 426 0 356 182 55 18 chr3 7709244 7709354 -210327804 - L1MC3 LINE L1 0 7785 7672 1694 218 8 3 chr3 7709362 7709716 -210327442 - MLT1A1 LTR MaLR 0 365 10 2765 217 41 18 chr3 7709725 7710797 -210326361 - L1MC3 LINE L1 -486 7299 6180 1473 183 87 67 chr3 7710804 7711251 -210325907 - MER31B LTR ERV1 -10 456 1 3588 186 25 30 chr3 7711251 7711464 -210325694 - L1MC3 LINE L1 -1611 6174 5962 2149 125 0 3 chr3 7711464 7711759 -210325399 - AluSc SINE Alu -10 299 6 3588 186 25 30 chr3 7711759 7712422 -210324736 - L1MC3 LINE L1 -1823 5962 5302 1197 244 178 11 chr3 7712419 7713047 -210324111 - L1MC3 LINE L1 -1306 4840 4108 * 1753 178 24 3 chr3 7713072 7713404 -210323754 + MLT1A1 LTR MaLR 1 341 -24 1172 214 67 17 chr3 7713419 7713775 -210323383 - L1MC3 LINE L1 -2065 4081 3708 4652 148 35 23 chr3 7713786 7714881 -210322277 - L1MA8 LINE L1 -73 6218 5111 3454 249 51 9 chr3 7714936 7716294 -210320864 - L1MC3 LINE L1 -2466 3680 2266 21 36 0 0 chr3 7716337 7716365 -210320793 + AT_rich Low_complexity Low_complexity 1 28 0 920 287 73 37 chr3 7716550 7716943 -210320215 - L1MC4a LINE L1 -1896 5912 5488 1719 197 7 0 chr3 7716943 7717243 -210319915 + AluJo SINE Alu 1 302 -10 920 287 73 37 chr3 7717243 7717449 -210319709 - L1MC4a LINE L1 -2320 5488 5291 527 327 78 27 chr3 7717473 7717920 -210319238 - L1MC4a LINE L1 -892 5254 4785 28 86 0 0 chr3 7717929 7717999 -210319159 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr3 7720899 7720928 -210316230 + AT_rich Low_complexity Low_complexity 1 29 0 185 263 0 0 chr3 7721205 7721243 -210315915 + MIR SINE MIR 113 150 -58 3059 206 73 16 chr3 7721758 7723395 -210313763 - L1PBa LINE L1 -4875 1988 115 199 350 52 0 chr3 7723439 7723536 -210313622 - MIR3 SINE MIR -9 199 98 370 275 17 40 chr3 7724197 7724373 -210312785 + MIR SINE MIR 50 220 -42 189 147 0 0 chr3 7724619 7724653 -210312505 + (TC)n Simple_repeat Simple_repeat 1 34 0 1699 211 108 0 chr3 7724936 7725334 -210311824 + MER31B LTR ERV1 4 444 -22 1190 192 20 119 chr3 7725352 7725747 -210311411 - MLT1A1 LTR MaLR -2 363 8 2369 192 58 13 chr3 7726964 7727495 -210309663 - MER89 LTR ERV1 0 559 5 750 210 18 32 chr3 7727503 7727722 -210309436 - L1ME1 LINE L1 -19 6147 5932 233 259 56 9 chr3 7727777 7727885 -210309273 - L1MCc LINE L1 -5485 938 826 696 222 70 59 chr3 7727992 7728262 -210308896 - ORSL DNA AcHobo 0 275 3 436 277 18 45 chr3 7728429 7728661 -210308497 - L1MCc LINE L1 -5708 714 258 3286 92 2 38 chr3 7728878 7729348 -210307810 + MLT2A2 LTR ERVL 1 453 0 29 0 0 0 chr3 7730338 7730367 -210306791 + AT_rich Low_complexity Low_complexity 1 29 0 204 167 19 74 chr3 7730420 7730474 -210306684 + L2 LINE L2 3263 3313 0 1015 267 100 10 chr3 7730772 7731162 -210305996 - MER110 LTR ERV1 -22 469 45 231 146 21 0 chr3 7731319 7731367 -210305791 + (CAT)n Simple_repeat Simple_repeat 3 51 0 2061 194 5 3 chr3 7731396 7731788 -210305370 - LTR39 LTR ERV1 0 783 391 1433 185 34 84 chr3 7731901 7732055 -210305103 - LTR39 LTR ERV1 -388 395 235 6166 100 11 5 chr3 7732055 7733220 -210303938 + L1PA10 LINE L1 4982 6152 -16 1433 185 34 84 chr3 7733220 7733481 -210303677 - LTR39 LTR ERV1 -548 235 1 412 275 25 17 chr3 7733485 7733605 -210303553 + MIR SINE MIR 33 153 -55 229 345 78 5 chr3 7733970 7734109 -210303049 + MIR SINE MIR 1 154 -65 360 303 8 41 chr3 7734179 7734301 -210302857 - L2 LINE L2 -7 3306 3189 4655 95 23 0 chr3 7734418 7735070 -210302088 + PABL_B LTR ERV1 1 667 0 338 279 162 0 chr3 7735079 7735215 -210301943 - MIR SINE MIR -16 246 89 21 36 0 0 chr3 7736337 7736365 -210300793 + AT_rich Low_complexity Low_complexity 1 28 0 348 313 71 28 chr3 7736383 7736735 -210300423 + HAL1 LINE L1 1168 1534 -973 25 51 0 0 chr3 7736868 7736907 -210300251 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr3 7737004 7737024 -210300134 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 7737024 7737047 -210300111 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr3 7737913 7737933 -210299225 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 7737933 7737956 -210299202 + (TG)n Simple_repeat Simple_repeat 2 24 0 2757 181 42 42 chr3 7738379 7738973 -210298185 + L1MB8 LINE L1 5514 6110 -68 1748 154 68 0 chr3 7738973 7739253 -210297905 - AluSg SINE Alu -11 299 1 2757 181 42 42 chr3 7739253 7739317 -210297841 + L1MB8 LINE L1 6109 6172 -6 25 0 0 0 chr3 7739380 7739405 -210297753 + AT_rich Low_complexity Low_complexity 1 25 0 239 316 0 0 chr3 7739832 7739911 -210297247 + T-rich Low_complexity Low_complexity 1 79 0 1742 219 38 22 chr3 7740492 7740943 -210296215 - MER31A LTR ERV1 -27 458 1 191 262 0 24 chr3 7741261 7741303 -210295855 - L2 LINE L2 -92 3180 3140 288 289 48 64 chr3 7741376 7741563 -210295595 + L2 LINE L2 2650 2833 -481 25 0 0 0 chr3 7743285 7743310 -210293848 + AT_rich Low_complexity Low_complexity 1 25 0 187 273 55 18 chr3 7744576 7744631 -210292527 - MIR SINE MIR -186 76 20 537 207 59 0 chr3 7744993 7745130 -210292028 + MIR SINE MIR 98 242 -20 217 152 22 43 chr3 7745101 7745147 -210292011 + L2 LINE L2 3218 3262 -10 * 354 299 64 141 chr3 7745772 7746119 -210291039 - L2 LINE L2 -12 3260 2959 3260 157 50 10 chr3 7746119 7746699 -210290459 - LTR26 LTR ERV1 0 603 1 354 299 64 141 chr3 7746699 7746833 -210290325 - L2 LINE L2 -313 2959 2816 225 0 0 0 chr3 7747081 7747106 -210290052 + (TA)n Simple_repeat Simple_repeat 2 26 0 1281 199 45 6 chr3 7747341 7747765 -210289393 - MLT1D LTR MaLR 0 505 1 3824 69 54 163 chr3 7747847 7748619 -210288539 - LTR12 LTR ERV1 0 688 1 289 274 228 25 chr3 7748687 7748884 -210288274 + L2 LINE L2 2841 3077 -195 205 125 0 0 chr3 7748938 7748970 -210288188 - L2 LINE L2 0 3313 3282 523 287 140 37 chr3 7748970 7749371 -210287787 - LTR16A LTR ERVL 0 450 9 814 291 88 39 chr3 7749382 7749934 -210287224 - L2 LINE L2 -28 3285 2699 180 0 0 0 chr3 7750284 7750304 -210286854 + (CTTTG)n Simple_repeat Simple_repeat 3 22 0 216 307 45 23 chr3 7750550 7750638 -210286520 - L2 LINE L2 -33 3239 3150 761 177 35 0 chr3 7750642 7750783 -210286375 + MER5A DNA MER1_type 3 148 -41 2120 173 19 35 chr3 7751045 7751290 -210285868 - MSTB LTR MaLR 0 426 189 1830 92 3 76 chr3 7751290 7751606 -210285552 - L1PA10 LINE L1 -9 6159 5867 2120 173 19 35 chr3 7751606 7751789 -210285369 - MSTB LTR MaLR -237 189 5 4256 250 95 32 chr3 7753094 7753553 -210283605 + L1MB7 LINE L1 5 434 -6525 1870 191 89 0 chr3 7753553 7753946 -210283212 - MSTA LTR MaLR 0 428 1 4256 250 95 32 chr3 7753946 7755447 -210281711 + L1MB7 LINE L1 434 2107 -4852 1570 205 80 27 chr3 7755447 7755823 -210281335 - MSTD LTR MaLR 0 396 1 4256 250 95 32 chr3 7755823 7756210 -210280948 + L1MB7 LINE L1 2107 2468 -4491 444 243 84 61 chr3 7756329 7756663 -210280495 + L1MB7 LINE L1 2476 2820 -4318 6093 88 34 0 chr3 7756663 7757643 -210279515 + L1PA13 LINE L1 5152 6161 -2 444 243 84 61 chr3 7757643 7757654 -210279504 + L1MB7 LINE L1 2820 2829 -4309 2940 204 31 0 chr3 7757679 7758316 -210278842 + L1MB7 LINE L1 6328 6984 -11 344 320 0 33 chr3 7758420 7758573 -210278585 - MIR SINE MIR -95 167 20 608 288 149 10 chr3 7758677 7759094 -210278064 - L1ME4a LINE L1 -99 6022 5548 207 333 0 0 chr3 7759140 7759191 -210277967 + MIR SINE MIR 36 86 -176 273 111 89 0 chr3 7759193 7759238 -210277920 - MLT2D LTR ERVL 0 414 366 1141 219 84 43 chr3 7759323 7759670 -210277488 - MLT2D LTR ERVL -53 361 1 382 228 150 16 chr3 7759692 7759819 -210277339 + MIR SINE MIR 111 254 -8 32 86 0 0 chr3 7760001 7760082 -210277076 + AT_rich Low_complexity Low_complexity 1 81 0 1414 216 20 26 chr3 7760156 7760507 -210276651 + MLT1A1 LTR MaLR 1 349 -16 182 351 60 45 chr3 7760846 7760980 -210276178 - L2 LINE L2 -183 3089 2954 239 178 0 0 chr3 7762259 7762304 -210274854 - MER5A DNA MER1_type -137 52 8 28 29 0 0 chr3 7762481 7762516 -210274642 + AT_rich Low_complexity Low_complexity 1 35 0 258 250 0 45 chr3 7762608 7762696 -210274462 - HAL1b LINE L1 -519 829 746 2819 113 3 0 chr3 7763101 7763464 -210273694 - THE1B LTR MaLR 0 364 1 187 54 54 27 chr3 7763571 7763608 -210273550 + (TATG)n Simple_repeat Simple_repeat 2 39 0 355 336 52 8 chr3 7764013 7764147 -210273011 - MIR3 SINE MIR -63 145 6 2678 140 36 10 chr3 7764269 7764684 -210272474 - MSTA LTR MaLR 0 428 3 1800 169 13 3 chr3 7764826 7765128 -210272030 - AluJb SINE Alu -7 305 1 685 323 106 23 chr3 7765260 7765885 -210271273 + L2 LINE L2 2565 3243 -70 2535 168 24 0 chr3 7765886 7766304 -210270854 + MSTA LTR MaLR 1 428 0 1956 140 66 41 chr3 7768436 7768800 -210268358 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr3 7769170 7769192 -210267966 + AT_rich Low_complexity Low_complexity 1 22 0 3861 120 0 0 chr3 7769517 7770049 -210267109 + L1PA8 LINE L1 5635 6166 -6 3289 224 48 8 chr3 7770463 7770827 -210266331 + MER21B LTR ERV1 4 352 -511 2606 168 26 5 chr3 7770827 7771244 -210265914 - MSTB LTR MaLR 0 426 1 3289 224 48 8 chr3 7771244 7771601 -210265557 + MER21B LTR ERV1 352 754 -109 402 150 75 0 chr3 7771890 7771970 -210265188 - MER53 DNA DNA -81 108 23 393 145 43 0 chr3 7771911 7771980 -210265178 + MER53 DNA DNA 116 187 -2 * 228 182 0 0 chr3 7773837 7773881 -210263277 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1508 208 7 11 chr3 7773882 7774166 -210262992 - AluJo SINE Alu -21 291 9 229 309 72 31 chr3 7774523 7774620 -210262538 - MIR SINE MIR -66 142 42 227 239 0 45 chr3 7774650 7774717 -210262441 + MER113 DNA MER1_type? 1 64 -457 273 119 0 0 chr3 7774786 7774828 -210262330 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2716 203 17 67 chr3 7775237 7775881 -210261277 - LTR9 LTR ERV1 0 612 1 1286 197 29 18 chr3 7775886 7776160 -210260998 - HUERS-P3 LTR ERV1 -6 8913 8299 220 263 18 0 chr3 7777054 7777111 -210260047 - L2 LINE L2 -5 3308 3251 660 330 90 44 chr3 7777160 7777615 -210259543 + LTR16C LTR ERVL 1 476 -15 495 270 0 0 chr3 7777629 7777740 -210259418 - MIR SINE MIR -115 147 37 1263 152 5 5 chr3 7777918 7778122 -210259036 + L1MB1 LINE L1 5960 6163 -5 587 233 166 14 chr3 7778156 7778379 -210258779 + MIR SINE MIR 6 262 0 1018 216 82 5 chr3 7779855 7780063 -210257095 + MER58A DNA MER1_type 1 224 0 3063 123 82 14 chr3 7780257 7780769 -210256389 - LTR10A LTR ERV1 -62 547 1 13665 205 16 21 chr3 7780818 7783896 -210253262 - LTR10A-int LTR ERV1 0 7784 4065 4985 81 33 0 chr3 7783867 7784585 -210252573 - Harlequin LTR ERV1 -4320 2576 1835 * 366 191 167 0 chr3 7784600 7784684 -210252474 + LTR8 LTR ERV1 156 253 -438 1428 91 5 5 chr3 7784688 7784886 -210252272 - LTR10A-int LTR ERV1 -2805 2781 2584 * 4632 235 14 27 chr3 7784857 7786086 -210251072 - LTR10A-int LTR ERV1 -3015 4112 2686 3141 189 5 6 chr3 7786066 7786786 -210250372 - LTR10A-int LTR ERV1 -3957 2692 2202 * 313 170 104 0 chr3 7786774 7786880 -210250278 - LTR10A-int LTR ERV1 -4705 1944 1828 * 327 157 0 0 chr3 7786897 7786967 -210250191 + CT-rich Low_complexity Low_complexity 2 71 0 4316 114 5 3 chr3 7786999 7787631 -210249527 - LTR10A-int LTR ERV1 -4783 1866 1234 2753 141 53 4 chr3 7787615 7788069 -210249089 - LTR10A-int LTR ERV1 -5628 1021 546 * 1584 180 21 7 chr3 7788183 7788467 -210248691 - LTR10A-int LTR ERV1 -6359 290 3 3096 126 78 17 chr3 7788480 7788996 -210248162 - LTR10A LTR ERV1 -62 547 1 294 241 41 76 chr3 7789522 7789667 -210247491 - L2 LINE L2 -2 3311 3172 435 277 124 10 chr3 7789677 7789879 -210247279 + MIR SINE MIR 31 255 -7 1885 177 111 60 chr3 7790100 7790621 -210246537 - LTR10A LTR ERV1 -61 548 1 17623 109 9 19 chr3 7790624 7793447 -210243711 - Harlequin LTR ERV1 -4 6645 1899 12342 57 1 3 chr3 7793447 7795714 -210241444 - L1PA5 LINE L1 0 6154 3903 17623 109 9 19 chr3 7795714 7795808 -210241350 - Harlequin LTR ERV1 -4750 1899 1806 342 238 167 0 chr3 7795809 7795893 -210241265 + LTR8 LTR ERV1 156 253 -438 4754 96 0 34 chr3 7795895 7796711 -210240447 - Harlequin LTR ERV1 -5176 1720 886 475 259 91 112 chr3 7797089 7797429 -210239729 - L2 LINE L2 -1 3271 2939 373 253 0 0 chr3 7797429 7797508 -210239650 - MER116 DNA Mariner 0 80 2 3319 166 25 77 chr3 7798110 7798839 -210238319 - LTR8 LTR ERV1 0 691 1 530 283 27 16 chr3 7799721 7799905 -210237253 - MIR SINE MIR -19 243 58 723 206 32 0 chr3 7799931 7800057 -210237101 - FLAM_A SINE Alu -12 130 1 332 385 37 7 chr3 7800091 7800226 -210236932 + MER5A DNA MER1_type 14 152 -37 345 197 215 5 chr3 7800745 7800854 -210236304 - MER5A DNA MER1_type 0 189 48 * 420 208 146 8 chr3 7800843 7800973 -210236185 - MER5A DNA MER1_type -41 148 1 252 248 9 124 chr3 7801204 7801317 -210235841 + MIR SINE MIR 82 181 -81 472 333 85 30 chr3 7801371 7801701 -210235457 + LTR33 LTR ERVL 105 452 -69 425 269 80 35 chr3 7802151 7802352 -210234806 + MLT1J LTR MaLR 301 510 -1 357 325 0 0 chr3 7802505 7802585 -210234573 + L2 LINE L2 3174 3253 -19 21 36 0 0 chr3 7802934 7802962 -210234196 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 7803754 7803775 -210233383 + AT_rich Low_complexity Low_complexity 1 21 0 380 330 46 71 chr3 7803885 7804474 -210232684 - L2 LINE L2 -2 3311 2741 1829 229 25 15 chr3 7804561 7804963 -210232195 + MLT2D LTR ERVL 1 406 -8 880 216 114 24 chr3 7805637 7805934 -210231224 + MER5C DNA MER1_type 1 324 0 23 0 0 0 chr3 7806698 7806721 -210230437 + AT_rich Low_complexity Low_complexity 1 23 0 480 195 27 87 chr3 7807285 7807434 -210229724 - MER5A DNA MER1_type -46 143 4 2093 148 0 7 chr3 7807980 7808290 -210228868 + AluSq SINE Alu 1 308 -5 474 190 153 21 chr3 7808306 7808484 -210228674 - MER58 DNA MER1_type -1 2419 1 2298 114 0 0 chr3 7808561 7808858 -210228300 - AluSc SINE Alu -12 297 1 2166 77 46 3 chr3 7808860 7809145 -210228013 - AluSx SINE Alu -15 297 1 21 0 0 0 chr3 7809145 7809166 -210227992 + AT_rich Low_complexity Low_complexity 1 21 0 407 286 160 28 chr3 7809675 7809888 -210227270 - MIR SINE MIR -11 251 11 189 107 0 0 chr3 7810066 7810094 -210227064 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 346 108 31 0 chr3 7810217 7810282 -210226876 + C-rich Low_complexity Low_complexity 4 70 0 1138 199 28 5 chr3 7810546 7810757 -210226401 - MER58A DNA MER1_type -3 221 6 663 306 41 30 chr3 7811017 7811288 -210225870 + MLT1G1 LTR MaLR 11 284 -311 354 23 0 0 chr3 7811491 7811534 -210225624 + (CA)n Simple_repeat Simple_repeat 1 43 0 865 236 15 10 chr3 7811709 7811904 -210225254 + MER58A DNA MER1_type 21 216 -8 509 281 84 0 chr3 7811910 7812077 -210225081 + MLT1G1 LTR MaLR 410 590 0 621 269 31 62 chr3 7813380 7813637 -210223521 + MIR SINE MIR 7 255 -7 2005 136 48 57 chr3 7814330 7814807 -210222351 + ERVL-B1 LTR ERVL 5285 5757 -7 1091 228 31 49 chr3 7814807 7815244 -210221914 + MLT2B1 LTR ERVL 1 434 -30 456 51 0 0 chr3 7815244 7815303 -210221855 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1091 228 31 49 chr3 7815303 7815334 -210221824 + MLT2B1 LTR ERVL 434 464 0 444 180 0 22 chr3 7815509 7815598 -210221560 + LTR16A1 LTR ERVL 371 457 0 196 152 0 0 chr3 7816790 7816823 -210220335 + MIR SINE MIR 157 189 -73 304 294 101 0 chr3 7817259 7817378 -210219780 - MER117 DNA MER1_type -65 132 2 526 162 48 0 chr3 7817460 7817565 -210219593 - L1PA11 LINE L1 0 6174 6065 1226 198 42 6 chr3 7817778 7818091 -210219067 + MER33 DNA MER1_type 1 324 0 225 288 45 30 chr3 7818419 7818485 -210218673 + L2 LINE L2 3166 3232 -40 591 293 164 8 chr3 7818629 7818885 -210218273 - LTR16C LTR ERVL -10 481 186 275 322 71 31 chr3 7820233 7820462 -210216696 + L2 LINE L2 2772 3009 -263 209 181 193 48 chr3 7820928 7821011 -210216147 + L2 LINE L2 3219 3313 0 529 272 26 79 chr3 7821901 7822302 -210214856 + L2 LINE L2 2569 3029 -243 1679 215 28 50 chr3 7822320 7822785 -210214373 + MLT2B1 LTR ERVL 6 460 -60 258 280 57 64 chr3 7822854 7823011 -210214147 + L2 LINE L2 3122 3277 -36 2206 101 0 14 chr3 7823638 7823924 -210213234 - AluSc SINE Alu -8 301 20 2038 138 7 0 chr3 7824397 7824686 -210212472 - AluSx SINE Alu -19 293 3 180 0 0 0 chr3 7824783 7824803 -210212355 + (A)n Simple_repeat Simple_repeat 1 20 0 257 248 40 40 chr3 7824898 7824999 -210212159 - Charlie7 DNA MER1_type -2506 106 6 433 188 38 47 chr3 7825352 7825552 -210211606 + MER5C DNA MER1_type 3 280 -44 956 244 58 46 chr3 7825555 7825949 -210211209 + L1MA9 LINE L1 5876 6274 -38 202 189 0 0 chr3 7825993 7826030 -210211128 + MER5C DNA MER1_type 288 324 0 1770 72 0 32 chr3 7826240 7826491 -210210667 + L1PA6 LINE L1 5912 6154 0 323 278 38 15 chr3 7826767 7826900 -210210258 + MIR SINE MIR 79 214 -48 185 402 43 0 chr3 7826955 7827072 -210210086 - L2 LINE L2 -1 3312 3191 235 390 41 8 chr3 7827108 7827231 -210209927 + L2 LINE L2 3143 3269 -3 435 280 148 7 chr3 7827257 7827591 -210209567 - LTR16C LTR ERVL -31 460 50 25 0 0 0 chr3 7827812 7827837 -210209321 + AT_rich Low_complexity Low_complexity 1 25 0 463 300 176 5 chr3 7828171 7828381 -210208777 - MIR SINE MIR -12 250 5 362 264 50 41 chr3 7831112 7831233 -210205925 - L2 LINE L2 -1 3312 3191 2160 127 3 3 chr3 7831239 7831539 -210205619 - AluSx SINE Alu -12 300 1 235 361 31 0 chr3 7831605 7831735 -210205423 - MIR SINE MIR -6 256 123 389 289 49 14 chr3 7831754 7831896 -210205262 - MIR SINE MIR 0 262 116 356 213 53 43 chr3 7832308 7832402 -210204756 - MIR3 SINE MIR -15 193 99 701 235 42 0 chr3 7832673 7832839 -210204319 - MER5B DNA MER1_type -5 173 1 463 344 46 15 chr3 7832895 7833090 -210204068 - MIR SINE MIR -4 258 58 246 225 25 12 chr3 7833511 7833591 -210203567 + MLT1L LTR MaLR 181 261 -354 247 244 122 0 chr3 7834168 7834250 -210202908 + MLT1L LTR MaLR 517 608 -7 639 311 6 0 chr3 7834266 7834443 -210202715 - MER45A DNA AcHobo 0 178 1 180 326 54 71 chr3 7835752 7835936 -210201222 + L2 LINE L2 2873 3053 -219 1526 120 6 28 chr3 7836166 7836441 -210200717 - L1PA16 LINE L1 -457 5727 5462 1450 123 27 116 chr3 7836457 7836959 -210200199 + L1PA16 LINE L1 5719 6129 -2 222 313 104 0 chr3 7837111 7837178 -210199980 + L2 LINE L2 3240 3313 0 660 233 29 71 chr3 7838250 7838565 -210198593 - MLT1E2 LTR MaLR -304 201 2 394 313 46 0 chr3 7839586 7839717 -210197441 + L2 LINE L2 2670 2806 -508 192 206 143 32 chr3 7839721 7839784 -210197374 + MER5C DNA MER1_type 1 70 -254 272 288 25 0 chr3 7839894 7839974 -210197184 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 426 256 22 112 chr3 7840023 7840335 -210196823 + L2 LINE L2 3020 3303 -10 219 186 0 0 chr3 7840378 7840421 -210196737 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 213 39 0 0 chr3 7840421 7840447 -210196711 + (CA)n Simple_repeat Simple_repeat 2 27 0 3828 148 43 40 chr3 7840450 7841223 -210195935 - LTR1 LTR ERV1 0 785 11 229 247 82 24 chr3 7842108 7842193 -210194965 - MIR SINE MIR -70 192 103 889 230 25 0 chr3 7842302 7842537 -210194621 + L1MA9 LINE L1 6035 6275 -37 531 261 84 104 chr3 7842638 7842786 -210194372 - L1MC4 LINE L1 -1 8041 7892 486 0 0 0 chr3 7842786 7842840 -210194318 + (CA)n Simple_repeat Simple_repeat 2 55 0 1110 195 125 35 chr3 7842842 7843155 -210194003 - MER2 DNA MER2_type -3 341 1 531 261 84 104 chr3 7843155 7843762 -210193396 - L1MC4 LINE L1 -151 7891 7298 613 268 93 34 chr3 7843775 7844163 -210192995 - L1M4 LINE L1 -3042 3104 2694 1100 200 17 13 chr3 7844272 7844572 -210192586 - L1MEc LINE L1 -1388 4692 4392 2126 224 48 64 chr3 7844584 7844859 -210192299 - L1MEc LINE L1 -2701 3379 3101 3123 127 8 0 chr3 7844859 7845341 -210191817 + LTR19A LTR ERV1 1 486 0 2126 224 48 64 chr3 7845341 7845507 -210191651 - L1MEc LINE L1 -2979 3101 2934 7107 57 18 3 chr3 7845507 7847026 -210190132 - L1PA6 LINE L1 -8 6146 4616 2126 224 48 64 chr3 7847026 7847484 -210189674 - L1MEc LINE L1 -3146 2934 2494 512 277 90 30 chr3 7847608 7848139 -210189019 - L1MEc LINE L1 -4574 1687 1125 2710 194 39 28 chr3 7848206 7848896 -210188262 - L1MA9 LINE L1 -108 6204 5507 226 281 117 10 chr3 7848930 7849229 -210187929 - L1MEc LINE L1 -5056 1014 684 272 150 33 0 chr3 7849229 7849289 -210187869 + (CTATT)n Simple_repeat Simple_repeat 1 62 0 257 239 60 26 chr3 7849600 7849717 -210187441 - L1MC4 LINE L1 -820 7222 7102 904 279 106 19 chr3 7849731 7850264 -210186894 - L1MC4 LINE L1 -886 6993 6346 355 167 0 0 chr3 7850267 7850333 -210186825 - L1ME2 LINE L1 -11 6153 6088 873 165 16 5 chr3 7851420 7851608 -210185550 - L1MC3 LINE L1 -1 7784 7595 1892 221 51 26 chr3 7851663 7852130 -210185028 - MLT2B1 LTR ERVL -41 479 1 1528 232 41 14 chr3 7852130 7852617 -210184541 + L1MC4 LINE L1 7542 8041 -1 2482 84 0 0 chr3 7852649 7852960 -210184198 - AluY SINE Alu 0 311 1 300 267 44 11 chr3 7853066 7853156 -210184002 - L2 LINE L2 -10 3303 3211 300 359 56 26 chr3 7853230 7853425 -210183733 - L2 LINE L2 -671 2643 2443 2445 61 0 0 chr3 7854000 7854297 -210182861 - AluY SINE Alu -10 301 5 230 253 44 33 chr3 7854335 7854426 -210182732 + HAL1 LINE L1 151 242 -2265 395 303 44 26 chr3 7854503 7854774 -210182384 + HAL1 LINE L1 2229 2504 -3 493 215 74 60 chr3 7855138 7855287 -210181871 - MER5B DNA MER1_type 0 178 28 400 296 8 0 chr3 7855389 7855521 -210181637 + MER117 DNA MER1_type 5 137 -60 23 0 0 0 chr3 7855610 7855633 -210181525 + AT_rich Low_complexity Low_complexity 1 23 0 248 325 105 44 chr3 7855808 7855922 -210181236 + L2 LINE L2 3144 3264 -8 426 283 46 16 chr3 7856575 7856886 -210180272 + MLT1G1 LTR MaLR 1 292 -298 577 286 68 32 chr3 7857244 7857464 -210179694 + MIR SINE MIR 32 259 -3 2303 62 7 36 chr3 7858097 7858402 -210178756 + AluY SINE Alu 1 296 -15 3208 70 14 0 chr3 7859567 7860122 -210177036 + L1P3 LINE L1 5137 5700 -454 366 235 137 10 chr3 7860276 7860378 -210176780 + LTR33 LTR ERVL 78 192 -329 26 0 0 0 chr3 7860853 7860879 -210176279 + AT_rich Low_complexity Low_complexity 1 26 0 1228 205 15 11 chr3 7860964 7861290 -210175868 + MSTD LTR MaLR 13 396 0 183 129 0 0 chr3 7862528 7862559 -210174599 + (A)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 7862612 7862640 -210174518 + AT_rich Low_complexity Low_complexity 1 28 0 1170 50 0 38 chr3 7863042 7863201 -210173957 - AluY SINE Alu -1 310 158 198 304 63 13 chr3 7864427 7864506 -210172652 + MIR3 SINE MIR 118 200 -8 473 287 0 17 chr3 7865648 7865763 -210171395 - L2 LINE L2 -1 3271 3159 1501 250 108 14 chr3 7865788 7866280 -210170878 - MLT1F LTR MaLR -2 540 3 317 371 5 27 chr3 7866424 7866610 -210170548 - L2 LINE L2 -237 3035 2854 229 122 0 0 chr3 7866757 7866798 -210170360 - L1MB3 LINE L1 -7 6176 6136 1989 213 6 15 chr3 7866804 7867273 -210169885 - L1MB4 LINE L1 -114 6066 5602 443 111 10 61 chr3 7867297 7867396 -210169762 - L1MA5 LINE L1 0 6300 6207 2433 90 0 13 chr3 7867410 7867721 -210169437 - AluSg SINE Alu -3 307 1 1895 126 7 32 chr3 7868619 7868928 -210168230 + AluSx SINE Alu 1 301 -11 413 165 10 0 chr3 7870226 7870323 -210166835 + CT-rich Low_complexity Low_complexity 3 100 0 1096 306 126 61 chr3 7871823 7872902 -210164256 + L2 LINE L2 1986 3168 -145 1985 127 7 0 chr3 7872902 7873193 -210163965 + AluY SINE Alu 1 293 -18 1096 306 126 61 chr3 7873193 7873350 -210163808 + L2 LINE L2 3168 3313 0 198 420 23 0 chr3 7873515 7873646 -210163512 - L2 LINE L2 -345 2968 2835 1189 195 125 8 chr3 7873696 7873952 -210163206 - AluJb SINE Alu -19 293 8 185 237 32 75 chr3 7874502 7874595 -210162563 + MIR SINE MIR 174 262 0 991 171 28 32 chr3 7874664 7874880 -210162278 + MER20 DNA MER1_type 1 215 -4 233 289 36 12 chr3 7874964 7875047 -210162111 + L2 LINE L2 3185 3269 -3 478 316 23 6 chr3 7875550 7875721 -210161437 + MER5B DNA MER1_type 3 176 -2 217 278 42 14 chr3 7876077 7876149 -210161009 - L2 LINE L2 -2 3270 3197 726 212 7 0 chr3 7877114 7877251 -210159907 + MER5A DNA MER1_type 2 139 -50 482 168 147 7 chr3 7877269 7877412 -210159746 - L1MC3 LINE L1 -187 7598 7436 266 197 42 0 chr3 7877421 7877492 -210159666 - L1ME2 LINE L1 -1 6163 6090 292 210 0 0 chr3 7877494 7877556 -210159602 + MER5A DNA MER1_type 127 188 -1 198 286 48 0 chr3 7877773 7877836 -210159322 - MIR SINE MIR 0 262 197 12665 135 32 10 chr3 7877844 7880022 -210157136 + Tigger1 DNA MER2_type 24 2249 -169 317 127 82 9 chr3 7880033 7880143 -210157015 + (TA)n Simple_repeat Simple_repeat 2 119 0 263 60 15 104 chr3 7880143 7880210 -210156948 + LTR66 LTR ERVL 379 439 -171 1566 197 50 9 chr3 7880258 7880578 -210156580 + LTR32 LTR ERVL 15 347 -124 666 232 0 19 chr3 7880678 7880833 -210156325 + LTR32 LTR ERVL 320 471 0 922 113 0 33 chr3 7880833 7880983 -210156175 + Tigger1 DNA MER2_type 2274 2418 0 246 358 20 47 chr3 7881507 7881655 -210155503 + MER5A DNA MER1_type 31 174 -15 718 233 28 128 chr3 7882867 7882910 -210154248 - MLT2D LTR ERVL -1 413 367 321 26 0 0 chr3 7882910 7882948 -210154210 + (TG)n Simple_repeat Simple_repeat 2 39 0 718 233 28 128 chr3 7882948 7883363 -210153795 - MLT2D LTR ERVL -47 367 1 3342 155 16 75 chr3 7883788 7884522 -210152636 + LTR8 LTR ERV1 1 691 0 604 290 6 0 chr3 7886707 7886869 -210150289 - MIR SINE MIR -8 254 92 465 256 80 8 chr3 7886922 7887047 -210150111 - MER45A DNA AcHobo -44 134 1 180 111 0 0 chr3 7887128 7887155 -210150003 + (T)n Simple_repeat Simple_repeat 1 27 0 1105 93 3 2 chr3 7887198 7887495 -210149663 + THE1A LTR MaLR 1 355 0 187 326 0 0 chr3 7890094 7890137 -210147021 - MIR SINE MIR -10 252 210 451 312 145 14 chr3 7891188 7891409 -210145749 - MIR SINE MIR 0 262 13 183 372 88 9 chr3 7891465 7891578 -210145580 + L2 LINE L2 3147 3268 -4 1147 209 83 55 chr3 7891666 7892102 -210145056 + LTR37B LTR ERV1 21 468 0 23 0 0 0 chr3 7892121 7892144 -210145014 + AT_rich Low_complexity Low_complexity 1 23 0 504 313 55 20 chr3 7892194 7892395 -210144763 - MIR SINE MIR -46 216 9 704 291 58 21 chr3 7892515 7892756 -210144402 - MIR SINE MIR 0 262 13 1770 128 89 13 chr3 7893277 7893581 -210143577 - MER1B DNA MER1_type 0 339 13 390 288 6 106 chr3 7893766 7893936 -210143222 - MER5A DNA MER1_type -36 153 1 207 222 0 48 chr3 7894178 7894241 -210142917 + GA-rich Low_complexity Low_complexity 1 60 0 1354 195 91 21 chr3 7894396 7894525 -210142633 + MLT1A1 LTR MaLR 3 121 -244 2345 84 7 0 chr3 7894525 7894823 -210142335 + AluY SINE Alu 6 305 -6 1354 195 91 21 chr3 7894823 7895032 -210142126 + MLT1A1 LTR MaLR 121 365 0 267 295 71 27 chr3 7895345 7895457 -210141701 + L2 LINE L2 3153 3269 -3 321 241 19 46 chr3 7896503 7896611 -210140547 - MLT1G1 LTR MaLR -25 570 466 510 289 50 5 chr3 7896688 7896929 -210140229 - MLT1H1 LTR MaLR -291 264 8 727 272 110 4 chr3 7896929 7897157 -210140001 + MIR SINE MIR 11 262 0 2556 61 0 0 chr3 7899005 7899316 -210137842 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 7899410 7899432 -210137726 + AT_rich Low_complexity Low_complexity 1 22 0 219 209 12 23 chr3 7899547 7899633 -210137525 + (TTA)n Simple_repeat Simple_repeat 3 87 0 211 203 31 0 chr3 7899901 7899965 -210137193 + CT-rich Low_complexity Low_complexity 3 68 0 852 202 52 15 chr3 7900151 7900418 -210136740 + Charlie1b DNA MER1_type 149 425 -98 10022 38 4 1 chr3 7900421 7902421 -210134737 - L1PA4 LINE L1 -2 6153 4144 2755 40 0 0 chr3 7902421 7902775 -210134383 + L1P LINE L1 3831 4184 -1962 251 222 62 37 chr3 7902786 7902867 -210134291 + Charlie1b DNA MER1_type 435 517 -6 472 309 101 53 chr3 7903022 7903700 -210133458 - L1M4 LINE L1 -1085 5061 4356 279 185 31 15 chr3 7903989 7904054 -210133104 - MSTB2 LTR MaLR -391 66 1 1159 174 28 0 chr3 7905114 7905326 -210131832 - MER20 DNA MER1_type -1 218 1 27 62 0 0 chr3 7906560 7906608 -210130550 + AT_rich Low_complexity Low_complexity 1 48 0 2167 118 0 3 chr3 7906687 7906984 -210130174 + AluSg SINE Alu 1 296 -14 243 329 27 7 chr3 7907095 7907241 -210129917 - L1ME LINE L1 -233 5888 5740 1715 200 115 16 chr3 7907373 7907798 -210129360 + MLT1C LTR MaLR 1 467 0 182 197 15 76 chr3 7908052 7908118 -210129040 - MIR SINE MIR -16 246 185 410 269 15 54 chr3 7909786 7909916 -210127242 - L2 LINE L2 0 3272 3148 2381 67 0 0 chr3 7911425 7911736 -210125422 - AluY SINE Alu 0 311 1 442 316 58 12 chr3 7912129 7912300 -210124858 + MER5A DNA MER1_type 3 181 -8 509 304 40 13 chr3 7912921 7913145 -210124013 + MIR SINE MIR 33 262 0 274 222 74 28 chr3 7913505 7913613 -210123545 + LTR67 LTR ERVL 442 554 -3 285 302 37 12 chr3 7913712 7913894 -210123264 - L1ME LINE L1 -242 5879 5694 2410 191 57 28 chr3 7915157 7915792 -210121366 - Charlie1b DNA MER1_type -18 505 2091 1038 183 33 15 chr3 7915792 7916138 -210121020 - MER31B LTR ERV1 -72 394 1 * 2954 214 70 30 chr3 7916138 7916897 -210120261 - Charlie1a DNA MER1_type -664 791 2 330 26 0 0 chr3 7917013 7917052 -210120106 + (TG)n Simple_repeat Simple_repeat 2 40 0 356 265 0 10 chr3 7917052 7917154 -210120004 + GA-rich Low_complexity Low_complexity 2 102 0 248 322 0 33 chr3 7917235 7917325 -210119833 - LTR16C LTR ERVL 0 491 405 867 101 62 0 chr3 7918113 7918242 -210118916 + AluSc SINE Alu 165 301 -8 272 328 104 13 chr3 7918380 7918697 -210118461 + L1ME4a LINE L1 5598 5943 -178 2584 20 0 0 chr3 7920060 7920352 -210116806 + AluY SINE Alu 1 292 -19 546 355 22 16 chr3 7920912 7921095 -210116063 - MER91A DNA MER1_type -12 184 1 1004 262 32 26 chr3 7921767 7922080 -210115078 - MER110 LTR ERV1 0 491 177 198 217 33 67 chr3 7922659 7922719 -210114439 + MIR SINE MIR 99 145 -63 601 259 49 11 chr3 7922749 7922934 -210114224 - MIR SINE MIR -13 249 58 341 320 28 118 chr3 7923180 7923536 -210113622 - L3 LINE CR1 -208 1369 1046 446 330 14 46 chr3 7923794 7924012 -210113146 + MIR SINE MIR 26 236 -26 2038 148 3 0 chr3 7924483 7924781 -210112377 - AluSx SINE Alu -13 299 1 222 258 54 54 chr3 7925893 7925986 -210111172 - MIR SINE MIR -94 168 76 1429 265 41 89 chr3 7926154 7927059 -210110099 - L1ME LINE L1 -5182 888 28 769 238 16 21 chr3 7927303 7927492 -210109666 - MER58A DNA MER1_type 0 224 37 4534 150 29 37 chr3 7928564 7929025 -210108133 - Tigger1 DNA MER2_type -9 2409 1957 3590 87 8 0 chr3 7929025 7929519 -210107639 + L1PA14 LINE L1 5664 6161 0 4534 150 29 37 chr3 7929519 7929898 -210107260 - Tigger1 DNA MER2_type -461 1957 1576 15122 167 18 24 chr3 7929904 7935912 -210101246 - L1MA3 LINE L1 0 7724 1091 333 0 0 0 chr3 7935912 7935949 -210101209 + (TG)n Simple_repeat Simple_repeat 2 38 0 15122 167 18 24 chr3 7935949 7937020 -210100138 - L1MA3 LINE L1 -6633 1091 16 9815 131 30 1 chr3 7937020 7938544 -210098614 - Tigger1 DNA MER2_type -828 1590 24 358 258 13 71 chr3 7939480 7939494 -210097664 + MER5A DNA MER1_type 1 5 -184 292 238 62 94 chr3 7939494 7939654 -210097504 - MER5A DNA MER1_type -2 187 33 561 327 115 4 chr3 7940639 7940865 -210096293 - MIR SINE MIR -10 252 2 185 292 0 31 chr3 7941073 7941138 -210096020 - MIR3 SINE MIR -13 195 133 261 0 0 0 chr3 7941297 7941326 -210095832 + (T)n Simple_repeat Simple_repeat 1 29 0 471 260 78 32 chr3 7941436 7941590 -210095568 - MIR SINE MIR 0 262 102 198 0 0 0 chr3 7941650 7941672 -210095486 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 8294 118 17 33 chr3 7942774 7944071 -210093087 - THE1B-int LTR MaLR -300 1280 5 2129 146 30 0 chr3 7944082 7944417 -210092741 - THE1B LTR MaLR -12 352 8 554 212 48 7 chr3 7944459 7944605 -210092553 - L1MD2 LINE L1 -13 6582 6431 3263 205 28 20 chr3 7944606 7945468 -210091690 - L1MD1 LINE L1 -208 6270 5515 2750 188 21 0 chr3 7945469 7945938 -210091220 - LTR42 LTR ERVL 0 495 17 279 273 0 15 chr3 7945956 7946022 -210091136 - PABL_B-int LTR ERV1 -696 6062 5998 432 302 0 0 chr3 7946270 7946376 -210090782 - PABL_B-int LTR ERV1 -450 6672 6567 207 0 0 0 chr3 7946527 7946550 -210090608 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 69 0 0 chr3 7947335 7947364 -210089794 + (A)n Simple_repeat Simple_repeat 1 29 0 295 321 44 44 chr3 7947931 7948313 -210088845 - HERVL18 LTR ERVL -1266 4077 3763 281 336 25 21 chr3 7948699 7948934 -210088224 - HERVL18 LTR ERVL -2542 3505 3270 883 329 56 46 chr3 7949110 7949839 -210087319 - HERVL18 LTR ERVL -2407 2959 2193 2085 171 53 19 chr3 7949839 7950254 -210086904 + MSTB1 LTR MaLR 4 432 0 883 329 56 46 chr3 7950254 7950735 -210086423 - HERVL18 LTR ERVL -3173 2193 1718 2564 175 50 8 chr3 7952525 7953000 -210084158 - LTR42 LTR ERVL 0 495 1 1549 253 6 37 chr3 7953000 7953509 -210083649 - L1MD1 LINE L1 -866 5516 5024 452 284 50 44 chr3 7953516 7953789 -210083369 - L1MD1 LINE L1 -3686 2696 2414 1700 189 0 0 chr3 7953789 7954086 -210083072 - AluJb SINE Alu -15 297 1 452 284 50 44 chr3 7954086 7954231 -210082927 - L1MD1 LINE L1 -3968 2414 2271 445 318 61 20 chr3 7954529 7955013 -210082145 - L1MD1 LINE L1 -4512 1870 1266 393 365 66 5 chr3 7955301 7955512 -210081646 - L1MD1 LINE L1 -5451 921 698 847 163 94 0 chr3 7955832 7955992 -210081166 + FRAM SINE Alu 1 174 -2 2746 84 25 5 chr3 7956059 7956453 -210080705 - L1PA13 LINE L1 0 6163 5762 1416 211 33 86 chr3 7956462 7956941 -210080217 + L1ME3 LINE L1 5709 6162 0 334 226 24 36 chr3 7957740 7957824 -210079334 + L2 LINE L2 3189 3271 -1 236 264 38 0 chr3 7958086 7958139 -210079019 - L2 LINE L2 -11 3261 3207 211 258 21 62 chr3 7958625 7958722 -210078436 + MIR SINE MIR 170 262 0 481 332 35 26 chr3 7958752 7958984 -210078174 + MIR SINE MIR 12 245 -17 247 310 0 0 chr3 7960560 7960618 -210076540 + polypyrimidine Low_complexity Low_complexity 3 60 0 25 0 0 0 chr3 7963844 7963869 -210073289 + AT_rich Low_complexity Low_complexity 1 25 0 768 261 86 27 chr3 8014075 8014596 -210022562 - HAL1b LINE L1 0 1348 797 243 61 0 0 chr3 8015218 8015251 -210021907 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2059 108 0 31 chr3 8015253 8015541 -210021617 - AluSx SINE Alu -33 279 1 208 256 179 96 chr3 8016561 8016717 -210020441 - MIR3 SINE MIR -38 170 2 340 266 190 32 chr3 8017105 8017329 -210019829 + L1ME4a LINE L1 5701 5959 -162 744 237 41 46 chr3 8017394 8017613 -210019545 + MER20 DNA MER1_type 2 219 0 2590 123 5 2 chr3 8018166 8018566 -210018592 + L1PB1 LINE L1 5751 6151 0 23 54 0 0 chr3 8018566 8018603 -210018555 + AT_rich Low_complexity Low_complexity 1 37 0 359 295 100 53 chr3 8018607 8019092 -210018066 - L1MC/D LINE L1 -747 5938 5783 1880 217 61 68 chr3 8019113 8019671 -210017487 + MLT2B3 LTR ERVL 1 554 0 2217 287 76 24 chr3 8019722 8021668 -210015490 - L1MC/D LINE L1 -1007 5533 3467 * 10331 204 24 32 chr3 8021665 8025384 -210011774 - L1PA16 LINE L1 -2 6164 2475 3506 281 86 15 chr3 8025380 8025670 -210011488 - L1MC/D LINE L1 -5149 1391 1123 * 9262 34 1 19 chr3 8025670 8027603 -210009555 - L1PA3 LINE L1 0 6155 4243 3506 281 86 15 chr3 8027603 8028586 -210008572 - L1MC/D LINE L1 -5417 1123 27 1895 286 100 38 chr3 8028589 8030948 -210006210 - L1ME LINE L1 -2295 3785 1302 498 251 107 2 chr3 8030950 8031132 -210006026 + MER58A DNA MER1_type 9 213 0 462 95 0 0 chr3 8031105 8031168 -210005990 + MADE1 DNA Mariner 1 63 -17 * 268 258 51 73 chr3 8031177 8031355 -210005803 - L1ME LINE L1 -4929 1151 978 334 268 176 35 chr3 8031420 8031529 -210005629 - L1ME LINE L1 -5148 934 842 2382 80 6 6 chr3 8031529 8031842 -210005316 - AluSq SINE Alu 0 313 1 334 268 176 35 chr3 8031842 8032052 -210005106 - L1ME LINE L1 -5240 842 677 2319 45 28 0 chr3 8032851 8033140 -210004018 + AluY SINE Alu 1 297 -14 242 216 54 40 chr3 8033140 8033214 -210003944 - MER72 LTR ERV1 -643 79 5 804 155 14 20 chr3 8033216 8033364 -210003794 - FRAM SINE Alu -26 150 4 2325 78 10 0 chr3 8033380 8033675 -210003483 - AluSc SINE Alu -11 298 1 421 211 41 88 chr3 8033701 8033872 -210003286 + L1MC4a LINE L1 5730 5892 -1916 1833 151 18 0 chr3 8033873 8034152 -210003006 + AluSx SINE Alu 1 284 -28 2434 57 0 0 chr3 8034152 8034448 -210002710 + AluY SINE Alu 1 296 -15 347 281 34 0 chr3 8034949 8035038 -210002120 - L2 LINE L2 0 3313 3222 207 100 0 0 chr3 8035141 8035171 -210001987 + (CATA)n Simple_repeat Simple_repeat 2 31 0 862 303 85 8 chr3 8036513 8036876 -210000282 - MLT1I LTR MaLR 0 409 19 572 283 72 0 chr3 8037120 8037300 -209999858 - LTR16C LTR ERVL -2 489 297 317 272 19 19 chr3 8037313 8037416 -209999742 - LTR16B LTR ERVL 0 464 362 494 326 80 5 chr3 8037484 8037671 -209999487 - LTR16B LTR ERVL -263 201 1 348 326 96 17 chr3 8037678 8037856 -209999302 - LTR16C LTR ERVL -210 281 90 2260 109 0 6 chr3 8038041 8038352 -209998806 + AluSq SINE Alu 1 309 -4 388 217 12 12 chr3 8038484 8038567 -209998591 + MIR SINE MIR 86 168 -94 358 274 44 9 chr3 8038581 8038694 -209998464 + MIR SINE MIR 94 210 -52 399 313 94 40 chr3 8038940 8039215 -209997943 + MLT1J LTR MaLR 218 507 -4 203 260 41 55 chr3 8039490 8039563 -209997595 - MIR SINE MIR 0 262 191 389 97 14 0 chr3 8040182 8040254 -209996904 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2062 131 86 0 chr3 8040271 8040607 -209996551 + Tigger2 DNA MER2_type 2353 2717 -1 234 81 0 0 chr3 8040607 8040644 -209996514 + (TG)n Simple_repeat Simple_repeat 2 38 0 316 179 208 38 chr3 8041332 8041438 -209995720 - L3 LINE CR1 -116 1461 1338 185 108 27 0 chr3 8041717 8041754 -209995404 + A-rich Low_complexity Low_complexity 1 38 0 709 224 0 34 chr3 8041928 8042075 -209995083 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1382 177 4 38 chr3 8042073 8042226 -209994932 + Tigger3(Golem) DNA MER2_type 2782 2924 -114 1702 225 80 104 chr3 8042226 8043072 -209994086 + LTR1B LTR ERV1 1 826 0 1382 177 4 38 chr3 8043072 8043184 -209993974 + Tigger3(Golem) DNA MER2_type 2924 3038 0 586 264 52 26 chr3 8043634 8043903 -209993255 - MER97c DNA MER1_type? -1 1089 814 875 259 95 15 chr3 8044181 8044443 -209992715 - MER97b DNA MER1_type? -447 606 324 574 273 65 96 chr3 8044579 8044628 -209992530 + MLT1J LTR MaLR 166 215 -296 1793 116 0 4 chr3 8044628 8044878 -209992280 + AluSg SINE Alu 47 295 -15 574 273 65 96 chr3 8044878 8045150 -209992008 + MLT1J LTR MaLR 215 477 -34 181 214 309 0 chr3 8045315 8045399 -209991759 + MIR SINE MIR 142 251 -11 659 230 105 0 chr3 8045680 8045832 -209991326 + MER96 DNA MER1_type? 8 175 0 545 272 11 88 chr3 8046081 8046364 -209990794 - L1ME3 LINE L1 0 6162 5902 * 1121 246 62 22 chr3 8046361 8046825 -209990333 - L1M4 LINE L1 -1715 4431 3949 2277 229 35 63 chr3 8046909 8047211 -209989947 - L1ME1 LINE L1 -44 6122 5813 1702 163 3 10 chr3 8047211 8047499 -209989659 - AluSx SINE Alu -26 286 1 2277 229 35 63 chr3 8047499 8047991 -209989167 - L1ME1 LINE L1 -353 5813 5350 6709 75 2 5 chr3 8048048 8049359 -209987799 - L1PA6 LINE L1 0 6154 4843 27124 40 3 0 chr3 8049361 8053434 -209983724 + L1PA4 LINE L1 2013 6092 -63 1926 218 46 3 chr3 8053933 8054323 -209982835 - ERVL LTR ERVL -4169 1595 1189 3269 243 73 4 chr3 8054323 8055122 -209982036 - ERVL LTR ERVL -4735 1029 176 634 271 65 72 chr3 8055396 8055920 -209981238 - L1MC4 LINE L1 -820 7222 6703 627 201 7 0 chr3 8055928 8056067 -209981091 - L1MA4A LINE L1 0 6303 6164 2275 189 33 2 chr3 8056067 8056553 -209980605 - L1 LINE L1 -1118 5028 4528 1251 230 84 44 chr3 8056753 8057096 -209980062 - LTR18A LTR ERVL 0 357 1 2012 123 0 32 chr3 8057097 8057406 -209979752 - HERVL18 LTR ERVL 0 6047 5749 1628 151 4 4 chr3 8057407 8057659 -209979499 - HERVL18 LTR ERVL -262 5785 5534 1654 290 39 31 chr3 8057974 8058560 -209978598 + MLT1E LTR MaLR 3 593 0 301 193 0 0 chr3 8058741 8058798 -209978360 - Charlie5 DNA MER1_type -27 2585 2529 37938 88 5 6 chr3 8058911 8064771 -209972387 - L1PA4 LINE L1 -292 5863 11 2183 261 79 19 chr3 8064778 8065677 -209971481 - L1M4 LINE L1 -789 5357 4405 644 224 93 52 chr3 8065717 8065866 -209971292 - L1MCc LINE L1 -6130 293 128 2075 148 0 3 chr3 8065866 8065884 -209971274 - AluSq SINE Alu -9 304 287 333 0 0 0 chr3 8065884 8065921 -209971237 + (TG)n Simple_repeat Simple_repeat 2 38 0 2075 148 0 3 chr3 8065921 8066206 -209970952 - AluSq SINE Alu -26 287 2 644 224 93 52 chr3 8066206 8066324 -209970834 - L1MCc LINE L1 -6295 128 16 479 270 96 17 chr3 8066329 8066684 -209970474 - L1M4 LINE L1 -3177 2969 2587 2016 121 7 33 chr3 8066695 8067001 -209970157 + AluSx SINE Alu 1 298 -14 527 291 24 12 chr3 8067011 8067262 -209969896 - L1M4 LINE L1 -3625 2521 2268 184 294 0 20 chr3 8067407 8067458 -209969700 - L2 LINE L2 -1 3312 3263 271 228 0 18 chr3 8068671 8068728 -209968430 - L2 LINE L2 -94 3219 3164 298 313 91 20 chr3 8070020 8070119 -209967039 + MIR SINE MIR 41 146 -62 294 29 0 0 chr3 8070446 8070481 -209966677 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 373 59 0 chr3 8070519 8070621 -209966537 + L2 LINE L2 3151 3258 -14 1976 133 0 29 chr3 8070745 8071053 -209966105 - AluSx SINE Alu -13 299 1 350 228 60 92 chr3 8071755 8071939 -209965219 + MER5B DNA MER1_type 1 178 0 4236 158 44 31 chr3 8073274 8074186 -209962972 - L1MA9 LINE L1 -2 6310 5387 1092 132 114 9 chr3 8074184 8074411 -209962747 - L1PA15 LINE L1 0 6165 5915 * 557 198 0 16 chr3 8074409 8074530 -209962628 + L1P LINE L1 4527 4645 -1501 * 4127 151 20 35 chr3 8074543 8075261 -209961897 - L1PA15 LINE L1 -257 5908 5181 228 35 0 0 chr3 8075261 8075290 -209961868 + (TG)n Simple_repeat Simple_repeat 1 29 0 4127 151 20 35 chr3 8075290 8076102 -209961056 - L1PA15 LINE L1 -984 5181 4410 4896 214 20 7 chr3 8076112 8077275 -209959883 + L1P LINE L1 2995 4172 -1974 2158 147 57 22 chr3 8077276 8077789 -209959369 + MLT2A2 LTR ERVL 1 554 0 968 193 23 0 chr3 8077791 8078009 -209959149 + L1P LINE L1 4171 4393 -1753 * 3555 242 39 45 chr3 8078006 8078891 -209958267 - L1MA9 LINE L1 -748 5398 4509 1196 129 0 0 chr3 8078891 8079061 -209958097 - AluSq SINE Alu -11 302 133 3555 242 39 45 chr3 8079061 8079191 -209957967 - L1MA9 LINE L1 -1637 4509 4380 189 0 0 0 chr3 8079191 8079212 -209957946 + (TG)n Simple_repeat Simple_repeat 2 22 0 3555 242 39 45 chr3 8079212 8080239 -209956919 - L1MA9 LINE L1 -1766 4380 3293 1104 211 32 12 chr3 8080261 8080507 -209956651 + AluJo SINE Alu 61 311 -1 22 0 0 0 chr3 8080559 8080581 -209956577 + AT_rich Low_complexity Low_complexity 1 22 0 2427 76 0 0 chr3 8080581 8080884 -209956274 - AluY SINE Alu -8 303 1 384 235 53 8 chr3 8081116 8081248 -209955910 + MER113 DNA MER1_type? 1 138 -383 23 54 0 0 chr3 8081278 8081315 -209955843 + AT_rich Low_complexity Low_complexity 1 37 0 206 232 36 18 chr3 8084730 8084786 -209952372 - MIR SINE MIR -154 108 52 254 273 121 0 chr3 8085260 8085359 -209951799 - MLT1K LTR MaLR -106 482 372 1422 113 85 0 chr3 8085836 8086048 -209951110 + MER30 DNA MER1_type 1 230 0 436 299 17 69 chr3 8087175 8087406 -209949752 + MLT1G1 LTR MaLR 60 278 -317 920 112 11 28 chr3 8087542 8087720 -209949438 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 475 306 121 94 chr3 8088291 8088469 -209948689 - L2 LINE L2 0 3272 3100 1659 86 18 0 chr3 8088469 8088691 -209948467 + MER30 DNA MER1_type 5 230 0 475 306 121 94 chr3 8088691 8089295 -209947863 - L2 LINE L2 -172 3100 2430 2167 121 0 0 chr3 8089295 8089600 -209947558 + AluSc SINE Alu 1 305 0 475 306 121 94 chr3 8089600 8089889 -209947269 - L2 LINE L2 -842 2430 2150 21 36 0 0 chr3 8089981 8090009 -209947149 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 8090666 8090698 -209946460 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 2522 74 0 0 chr3 8091446 8091758 -209945400 - AluSx SINE Alu 0 312 1 225 0 0 0 chr3 8092090 8092115 -209945043 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 246 105 0 0 chr3 8092145 8092183 -209944975 + (A)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 8092433 8092462 -209944696 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 291 235 92 50 chr3 8092524 8092643 -209944515 - L2 LINE L2 -61 3252 3129 1313 287 85 29 chr3 8092688 8093117 -209944041 + L2 LINE L2 2462 2929 -384 2464 213 25 46 chr3 8093117 8093752 -209943406 + MLT1E3 LTR MaLR 1 622 -2 1313 287 85 29 chr3 8093752 8093887 -209943271 + L2 LINE L2 2929 3055 -258 1971 153 155 23 chr3 8093956 8094388 -209942770 - LTR45B LTR ERV1 0 489 1 336 309 9 36 chr3 8094578 8094688 -209942470 + L2 LINE L2 3173 3279 -34 348 387 61 21 chr3 8094710 8094998 -209942160 - L2 LINE L2 -219 3094 2785 1674 212 111 3 chr3 8094998 8095384 -209941774 + MSTA LTR MaLR 1 428 0 348 387 61 21 chr3 8095384 8095451 -209941707 - L2 LINE L2 -528 2785 2722 223 295 49 0 chr3 8095759 8095820 -209941338 + L2 LINE L2 3228 3291 -22 281 325 145 30 chr3 8095889 8096089 -209941069 + MIR SINE MIR 40 262 0 2854 65 17 12 chr3 8096206 8096608 -209940550 - MLT2A1 LTR ERVL -40 404 1 2377 67 0 7 chr3 8096620 8096918 -209940240 - AluY SINE Alu -15 296 1 24 0 0 0 chr3 8097996 8098020 -209939138 + AT_rich Low_complexity Low_complexity 1 24 0 288 319 115 44 chr3 8098292 8098474 -209938684 - LTR16C LTR ERVL -9 482 288 272 164 0 36 chr3 8099363 8099418 -209937740 - MIR SINE MIR -98 164 112 838 179 48 42 chr3 8099427 8099595 -209937563 - MER5A DNA MER1_type -20 169 1 201 292 186 9 chr3 8099647 8099760 -209937398 + L2 LINE L2 3134 3266 -6 282 244 108 114 chr3 8100371 8100547 -209936611 + MER5B DNA MER1_type 4 178 0 1097 181 67 99 chr3 8100555 8100709 -209936449 - MER58B DNA MER1_type -2079 341 184 1852 156 54 23 chr3 8100709 8101062 -209936096 - THE1B LTR MaLR 0 364 1 10896 103 35 0 chr3 8101062 8102589 -209934569 - THE1B-int LTR MaLR 0 1580 1 1879 154 78 23 chr3 8102589 8102934 -209934224 - THE1B LTR MaLR 0 364 1 1097 181 67 99 chr3 8102934 8103119 -209934039 - MER58B DNA MER1_type -2233 187 11 1140 164 37 85 chr3 8104516 8104906 -209932252 - MLT1A1 LTR MaLR -4 392 1 1637 212 113 42 chr3 8105777 8106281 -209930877 - MLT1F LTR MaLR 0 542 3 341 277 63 19 chr3 8106623 8106782 -209930376 - L1ME LINE L1 -570 5551 5386 22 0 0 0 chr3 8106895 8106917 -209930241 + AT_rich Low_complexity Low_complexity 1 22 0 1948 158 43 3 chr3 8108128 8108475 -209928683 + MER46B DNA MER2_type 1 236 0 187 237 68 93 chr3 8108983 8109101 -209928057 + MIR SINE MIR 147 261 -1 234 105 0 0 chr3 8109822 8109860 -209927298 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 261 11 11 chr3 8110190 8110282 -209926876 - MLT1I LTR MaLR -8 401 310 248 181 28 17 chr3 8111013 8111085 -209926073 - MLT1J1 LTR MaLR -328 118 45 566 134 0 0 chr3 8111186 8111283 -209925875 - L1P LINE L1 -1389 4757 4661 3490 65 0 0 chr3 8111283 8111766 -209925392 + L1PA8 LINE L1 5691 6173 0 560 255 108 28 chr3 8112268 8112480 -209924678 + MIR SINE MIR 34 262 0 180 111 0 0 chr3 8112637 8112664 -209924494 + (CCA)n Simple_repeat Simple_repeat 1 27 0 349 121 69 0 chr3 8112677 8112735 -209924423 + ERVL LTR ERVL 4862 4923 -841 309 26 0 0 chr3 8112740 8112778 -209924380 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 75 25 0 chr3 8112905 8112945 -209924213 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 282 9 0 chr3 8113091 8113201 -209923957 + (TA)n Simple_repeat Simple_repeat 1 111 0 1591 231 5 21 chr3 8113203 8113580 -209923578 - MLT2D LTR ERVL -43 371 1 760 192 0 30 chr3 8113580 8113747 -209923411 - ERVL-D LTR ERVL -7 5757 5596 288 158 0 0 chr3 8113747 8113804 -209923354 + (TA)n Simple_repeat Simple_repeat 1 57 0 180 158 0 0 chr3 8113854 8113892 -209923266 + (TA)n Simple_repeat Simple_repeat 1 38 0 271 255 108 20 chr3 8114003 8114105 -209923053 - MIR SINE MIR -60 202 92 210 71 0 0 chr3 8114199 8114227 -209922931 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1977 173 32 28 chr3 8116197 8116745 -209920413 - MLT2A2 LTR ERVL 0 554 2 1949 91 22 0 chr3 8117439 8117714 -209919444 + L1PA10 LINE L1 5879 6159 -9 396 0 0 0 chr3 8117715 8117759 -209919399 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 8117787 8117817 -209919341 + AT_rich Low_complexity Low_complexity 1 30 0 738 243 117 73 chr3 8117895 8118288 -209918870 + MLT1D LTR MaLR 2 421 -84 2110 141 33 25 chr3 8118288 8118649 -209918509 + THE1B LTR MaLR 1 364 0 738 243 117 73 chr3 8118649 8118733 -209918425 + MLT1D LTR MaLR 421 500 -5 245 376 9 9 chr3 8118892 8119001 -209918157 - L2 LINE L2 -15 3298 3190 31 26 0 0 chr3 8119641 8119679 -209917479 + AT_rich Low_complexity Low_complexity 1 38 0 2409 46 0 3 chr3 8120172 8120489 -209916669 - AluY SINE Alu 0 316 1 216 308 13 13 chr3 8122012 8122090 -209915068 + CT-rich Low_complexity Low_complexity 2 79 0 498 254 65 72 chr3 8122184 8122723 -209914435 + L1ME3 LINE L1 4456 4990 -1156 354 281 102 10 chr3 8122822 8123018 -209914140 + L1ME3 LINE L1 5119 5332 -814 2120 138 3 3 chr3 8123065 8123377 -209913781 + AluSx SINE Alu 1 312 0 3292 165 78 44 chr3 8123435 8124276 -209912882 + L1MC3 LINE L1 6908 7777 -8 412 265 137 24 chr3 8124404 8124702 -209912456 + L1ME3 LINE L1 5560 5894 -276 608 191 0 17 chr3 8125048 8125163 -209911995 - FLAM_A SINE Alu -19 114 2 206 226 129 43 chr3 8126382 8126475 -209910683 - L2 LINE L2 -5 3308 3208 523 299 114 0 chr3 8126518 8126685 -209910473 + MIR SINE MIR 49 234 -28 199 188 0 0 chr3 8126785 8126817 -209910341 - MIR SINE MIR -16 246 215 2155 159 55 26 chr3 8127911 8128327 -209908831 - MSTC LTR MaLR 0 428 1 568 279 128 11 chr3 8128327 8128506 -209908652 - MIR SINE MIR -4 258 59 2614 108 59 16 chr3 8128675 8129033 -209908125 + MLT2A1 LTR ERVL 1 342 -102 321 26 0 0 chr3 8129033 8129071 -209908087 + (TC)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 8129070 8129091 -209908067 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2614 108 59 16 chr3 8129071 8129158 -209908000 + MLT2A1 LTR ERVL 342 444 0 305 23 0 23 chr3 8129171 8129214 -209907944 + (TA)n Simple_repeat Simple_repeat 2 43 0 314 88 18 18 chr3 8129261 8129318 -209907840 + MLT2B1 LTR ERVL 464 520 0 27641 70 11 5 chr3 8129318 8133027 -209904131 + HERVL-B1-A1 LTR ERVL 1 3731 -1923 3949 134 176 28 chr3 8133027 8134014 -209903144 + MER11B LTR ERVK 1 1232 -4 14487 69 7 4 chr3 8134019 8135942 -209901216 + HERVL-B1-A1 LTR ERVL 3726 5654 0 1255 110 46 5 chr3 8135942 8136161 -209900997 + MLT2A1 LTR ERVL 1 228 -216 508 90 13 0 chr3 8136161 8136239 -209900919 + L1PA16 LINE L1 6079 6157 -9 323 291 57 19 chr3 8137145 8137303 -209899855 + MLT1K LTR MaLR 354 517 -71 22 70 0 0 chr3 8137801 8137844 -209899314 + AT_rich Low_complexity Low_complexity 1 43 0 394 241 143 0 chr3 8137892 8138025 -209899133 + MER103 DNA DNA 13 164 -2 213 291 121 21 chr3 8138146 8138287 -209898871 + MIR SINE MIR 72 226 -36 417 54 0 0 chr3 8138430 8138486 -209898672 + (CA)n Simple_repeat Simple_repeat 1 56 0 420 306 65 18 chr3 8139707 8139881 -209897277 - MIR SINE MIR -62 146 3 189 0 0 0 chr3 8141336 8141357 -209895801 + (CA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr3 8141934 8141968 -209895190 + AT_rich Low_complexity Low_complexity 1 34 0 6479 48 0 0 chr3 8141968 8142788 -209894370 - L1PA5 LINE L1 -6 6148 5329 372 316 90 11 chr3 8144245 8144422 -209892736 - MIR SINE MIR -56 206 16 1227 217 126 7 chr3 8144635 8144944 -209892214 - MSTD LTR MaLR -50 346 1 723 251 108 35 chr3 8145313 8145655 -209891503 + MER110A LTR ERV1 40 406 -62 23595 134 52 50 chr3 8145693 8150549 -209886609 - L1P LINE L1 -1268 4878 12 1083 146 25 33 chr3 8150685 8150925 -209886233 - THE1C LTR MaLR -2 373 136 27584 132 17 55 chr3 8150925 8156908 -209880250 - L1P3 LINE L1 -401 5753 13 8735 141 24 28 chr3 8156917 8158440 -209878718 - THE1C-int LTR MaLR -63 1517 1 1695 160 26 50 chr3 8158442 8158824 -209878334 - THE1C LTR MaLR -2 373 1 495 0 0 0 chr3 8159080 8159135 -209878023 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 8159197 8159218 -209877940 + AT_rich Low_complexity Low_complexity 1 21 0 1007 253 0 0 chr3 8159432 8159653 -209877505 + MER58A DNA MER1_type 1 221 -3 242 243 157 0 chr3 8159666 8159757 -209877401 + MER5A DNA MER1_type 4 112 -77 253 250 11 11 chr3 8161755 8161843 -209875315 + MLT1J1 LTR MaLR 341 428 -18 192 188 83 0 chr3 8162181 8162229 -209874929 + L2 LINE L2 3221 3272 0 205 254 0 70 chr3 8163138 8163209 -209873949 + MIR SINE MIR 197 262 0 634 318 102 27 chr3 8163595 8164139 -209873019 - L2 LINE L2 0 3313 2730 514 304 44 0 chr3 8165088 8165269 -209871889 - MER5A DNA MER1_type 0 189 1 1687 246 22 44 chr3 8166190 8166243 -209870915 + L1MA8 LINE L1 466 519 -6970 180 0 0 0 chr3 8166243 8166263 -209870895 + (CA)n Simple_repeat Simple_repeat 1 20 0 1687 246 22 44 chr3 8166263 8166704 -209870454 + L1MA8 LINE L1 519 949 -6540 1856 244 31 30 chr3 8166865 8167642 -209869516 + L1MA8 LINE L1 2018 2763 -4802 * 2840 208 48 37 chr3 8167634 8167823 -209869335 + L1MA8 LINE L1 3636 3821 -3744 2621 163 45 60 chr3 8167823 8168444 -209868714 + LTR9 LTR ERV1 1 612 0 2840 208 48 37 chr3 8168444 8169084 -209868074 + L1MA8 LINE L1 3821 4474 -3091 3320 174 17 8 chr3 8169087 8169686 -209867472 - MER50 LTR ERV1 -20 714 111 960 187 38 8 chr3 8169697 8169959 -209867199 - L1 LINE L1 -2813 3333 3064 317 238 0 40 chr3 8169960 8170061 -209867097 + MER50 LTR ERV1 1 97 -637 10123 173 24 27 chr3 8170070 8173135 -209864023 + L1MA8 LINE L1 4657 7709 -1 268 219 0 184 chr3 8173248 8173362 -209863796 + MER63 DNA MER1_type 2 720 -342 617 234 83 5 chr3 8173424 8173616 -209863542 + MER63 DNA MER1_type 838 1044 -18 912 306 62 12 chr3 8173616 8174034 -209863124 - LTR16B LTR ERVL -23 441 3 1955 185 55 47 chr3 8174294 8174716 -209862442 - MSTB LTR MaLR 0 426 2 938 279 20 8 chr3 8175310 8175561 -209861597 + MIR SINE MIR 1 254 -8 273 57 0 0 chr3 8175562 8175597 -209861561 + (CAT)n Simple_repeat Simple_repeat 1 35 0 222 329 24 24 chr3 8176860 8176942 -209860216 + MIR SINE MIR 11 92 -170 246 216 196 41 chr3 8177529 8177626 -209859532 - MLT1K LTR MaLR -326 262 151 23 0 0 0 chr3 8178380 8178403 -209858755 + AT_rich Low_complexity Low_complexity 1 23 0 240 344 96 24 chr3 8179717 8179842 -209857316 + MER5A DNA MER1_type 34 167 -22 494 299 123 25 chr3 8180528 8181056 -209856102 + HAL1 LINE L1 735 1314 -1193 1139 292 73 41 chr3 8181235 8182057 -209855101 + HAL1 LINE L1 1627 2474 -33 2289 214 49 43 chr3 8182666 8183221 -209853937 - MER74A LTR ERVL 0 558 1 288 303 115 8 chr3 8183692 8183814 -209853344 - MER117 DNA MER1_type -29 168 34 249 336 79 58 chr3 8183862 8184103 -209853055 - L2 LINE L2 -202 3070 2825 371 240 41 18 chr3 8184112 8184283 -209852875 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 73 0 0 chr3 8184288 8184343 -209852815 + AT_rich Low_complexity Low_complexity 1 55 0 566 289 27 0 chr3 8184396 8184545 -209852613 - MIR SINE MIR -108 154 2 350 300 64 27 chr3 8185866 8185976 -209851182 + L2 LINE L2 3139 3252 -20 200 182 0 0 chr3 8186194 8186227 -209850931 + (CAAAG)n Simple_repeat Simple_repeat 4 36 0 386 167 77 13 chr3 8186435 8186513 -209850645 - LTR54 LTR ERV1 -427 83 1 658 235 109 53 chr3 8186751 8186806 -209850352 + MER5C DNA MER1_type 6 56 -268 5393 48 31 3 chr3 8186806 8187507 -209849651 + LTR30 LTR ERV1 1 721 -1 658 235 109 53 chr3 8187507 8187753 -209849405 + MER5C DNA MER1_type 56 324 0 248 0 31 0 chr3 8187805 8187837 -209849321 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2100 79 0 0 chr3 8188173 8188480 -209848678 - AluY SINE Alu 0 307 1 265 341 53 8 chr3 8188777 8188909 -209848249 - MIR SINE MIR -6 256 119 25 65 0 0 chr3 8189162 8189208 -209847950 + AT_rich Low_complexity Low_complexity 1 46 0 595 213 0 31 chr3 8189208 8189335 -209847823 - AluJb SINE Alu -189 123 1 964 246 5 5 chr3 8189337 8189548 -209847610 - MER58A DNA MER1_type -10 214 4 1295 153 60 0 chr3 8191467 8191682 -209845476 + MER30 DNA MER1_type 3 230 0 287 395 0 0 chr3 8191696 8191830 -209845328 + MIR SINE MIR 31 164 -98 246 243 90 54 chr3 8192329 8192440 -209844718 - MLT1J2 LTR MaLR -302 148 34 761 163 0 0 chr3 8192489 8192612 -209844546 + FLAM_C SINE Alu 1 123 -20 903 229 25 4 chr3 8193443 8193683 -209843475 - L1MA4 LINE L1 -5 6295 6051 198 338 38 0 chr3 8193739 8193819 -209843339 + L2 LINE L2 3231 3313 0 709 260 105 47 chr3 8193933 8194229 -209842929 - MLT1I LTR MaLR -95 314 2 242 262 0 39 chr3 8194891 8194994 -209842164 + CT-rich Low_complexity Low_complexity 3 101 0 188 282 39 64 chr3 8195034 8195112 -209842046 - L2 LINE L2 -19 3294 3219 280 336 69 30 chr3 8195637 8195768 -209841390 - L2 LINE L2 0 3272 3137 1454 141 0 4 chr3 8195983 8196224 -209840934 - L1MA4 LINE L1 -5 6295 6056 1018 276 22 63 chr3 8196327 8196453 -209840705 - L1ME3A LINE L1 -5 6165 6035 2311 41 7 3 chr3 8196453 8196745 -209840413 + AluY SINE Alu 1 293 -18 1018 276 22 63 chr3 8196745 8197063 -209840095 - L1ME3A LINE L1 -135 6035 5739 368 232 108 77 chr3 8197095 8197354 -209839804 - MER113 DNA MER1_type? -236 285 19 283 306 194 11 chr3 8197832 8197916 -209839242 - MIR SINE MIR -18 244 177 1373 207 107 52 chr3 8197916 8198395 -209838763 + MLT1D LTR MaLR 1 505 0 283 306 194 11 chr3 8198395 8198496 -209838662 - MIR SINE MIR -85 177 25 488 264 54 86 chr3 8198707 8199021 -209838137 - MLT1K LTR MaLR -24 564 261 304 304 0 49 chr3 8200136 8200238 -209836920 - MIR3 SINE MIR -45 163 67 391 336 17 0 chr3 8200334 8200453 -209836705 + L2 LINE L2 3184 3304 -9 438 324 105 5 chr3 8201650 8201869 -209835289 + MIR SINE MIR 16 256 -6 295 309 9 45 chr3 8202537 8202647 -209834511 - L2 LINE L2 -5 3308 3203 * 694 290 42 9 chr3 8202626 8202843 -209834315 - MIR SINE MIR -2 260 37 209 336 112 14 chr3 8203103 8203246 -209833912 + MIR SINE MIR 100 256 -6 21 36 0 0 chr3 8205068 8205096 -209832062 + AT_rich Low_complexity Low_complexity 1 28 0 2605 39 0 3 chr3 8205188 8205493 -209831665 + AluY SINE Alu 1 304 -7 327 49 0 0 chr3 8205985 8206026 -209831132 + (TG)n Simple_repeat Simple_repeat 2 42 0 1071 207 9 26 chr3 8206660 8206887 -209830271 + MER58A DNA MER1_type 1 223 -1 216 291 13 25 chr3 8207349 8207428 -209829730 + MIR3 SINE MIR 122 199 -9 818 201 4 107 chr3 8208593 8208837 -209828321 + MER20 DNA MER1_type 1 219 0 332 268 108 56 chr3 8210134 8210298 -209826860 - MIR3 SINE MIR -15 193 20 395 173 12 0 chr3 8210366 8210447 -209826711 + MER53 DNA DNA 101 182 -7 489 223 236 0 chr3 8211262 8211419 -209825739 + MIR SINE MIR 14 207 -55 2319 83 0 10 chr3 8211720 8212020 -209825138 + AluSc SINE Alu 1 297 -12 261 329 12 0 chr3 8212029 8212114 -209825044 + L2 LINE L2 3182 3267 -5 1041 256 78 43 chr3 8213241 8213612 -209823546 + MLT1I LTR MaLR 26 409 0 249 384 0 0 chr3 8214326 8214425 -209822733 + MIR SINE MIR 52 150 -112 191 349 39 29 chr3 8215688 8215798 -209821360 + MIR SINE MIR 16 127 -81 998 217 109 29 chr3 8215864 8216177 -209820981 - MER58B DNA MER1_type -3 338 1 398 284 71 13 chr3 8216207 8216362 -209820796 + MLT1J2 LTR MaLR 287 450 0 285 338 40 15 chr3 8217238 8217434 -209819724 + MIR SINE MIR 7 206 -56 272 155 14 0 chr3 8217561 8217632 -209819526 + CT-rich Low_complexity Low_complexity 1 72 0 375 73 0 0 chr3 8217636 8217691 -209819467 + (CA)n Simple_repeat Simple_repeat 2 56 0 2447 264 48 13 chr3 8218639 8219389 -209817769 + MER20B DNA MER1_type 8 783 0 430 367 87 31 chr3 8219645 8219934 -209817224 - L3 LINE CR1 -7 1570 1266 376 374 92 18 chr3 8220437 8220827 -209816331 + L2 LINE L2 2892 3310 -3 183 291 255 7 chr3 8220916 8221057 -209816101 - L3 LINE CR1 -330 1247 1072 7625 23 0 4 chr3 8221212 8222238 -209814920 - L1PA4 LINE L1 -2 6153 5128 238 333 0 0 chr3 8222842 8222908 -209814250 - MER117 DNA MER1_type -8 189 124 282 326 109 42 chr3 8223976 8224169 -209812989 - MIR SINE MIR -14 248 43 264 380 78 14 chr3 8224428 8224570 -209812588 - L2 LINE L2 -5 3267 3117 1027 81 5 38 chr3 8225123 8225129 -209812029 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1027 81 5 38 chr3 8225129 8225315 -209811843 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1888 164 10 6 chr3 8225722 8226033 -209811125 + AluSx SINE Alu 1 312 0 394 195 46 0 chr3 8226109 8226196 -209810962 - MLT1H LTR MaLR -1 548 458 692 282 29 31 chr3 8226273 8226557 -209810601 - MLT1H LTR MaLR -222 327 1 282 163 24 171 chr3 8227603 8227726 -209809432 - L2 LINE L2 -5 3308 3204 297 53 0 0 chr3 8228380 8228418 -209808740 + U3 snRNA snRNA 1 38 -179 547 308 51 40 chr3 8228593 8228846 -209808312 - MIR SINE MIR -5 257 2 222 179 0 89 chr3 8228911 8228967 -209808191 + MIR SINE MIR 103 153 -109 210 71 0 0 chr3 8229359 8229387 -209807771 + (TG)n Simple_repeat Simple_repeat 1 28 0 800 134 12 18 chr3 8229453 8229617 -209807541 + CT-rich Low_complexity Low_complexity 4 166 0 1518 169 19 8 chr3 8229621 8229881 -209807277 - AluJb SINE Alu -38 274 12 907 288 58 27 chr3 8230280 8230572 -209806586 + L3 LINE CR1 1166 1466 -111 566 335 162 34 chr3 8230833 8230899 -209806259 + L2 LINE L2 2054 2110 -1204 1846 187 12 0 chr3 8230899 8231242 -209805916 - MER7A DNA MER2_type -1 345 1 566 335 162 34 chr3 8231242 8231730 -209805428 + L2 LINE L2 2110 2679 -635 232 379 92 15 chr3 8231855 8232244 -209804914 + L2 LINE L2 2687 3142 -171 366 322 94 35 chr3 8232410 8232612 -209804546 + MIR SINE MIR 13 226 -36 350 294 22 0 chr3 8232784 8232876 -209804282 + L1M4 LINE L1 707 800 -5742 5047 227 81 53 chr3 8233275 8234925 -209802233 + L1MB7 LINE L1 -248 1447 -4833 745 250 66 19 chr3 8234949 8235184 -209801974 + L1MB7 LINE L1 1594 1813 -4571 4401 222 42 11 chr3 8235276 8236321 -209800837 + L1MB7 LINE L1 4387 5519 -901 2529 145 33 9 chr3 8236321 8236742 -209800416 - Tigger2a DNA MER2_type -3 431 1 4401 222 42 11 chr3 8236742 8237543 -209799615 + L1MB7 LINE L1 5519 6293 -127 579 270 104 26 chr3 8237980 8238210 -209798948 - MLT1L LTR MaLR 0 615 368 426 20 0 0 chr3 8238367 8238418 -209798740 + (TG)n Simple_repeat Simple_repeat 2 52 0 219 273 0 0 chr3 8240202 8240257 -209796901 + (TA)n Simple_repeat Simple_repeat 1 55 0 1483 211 19 14 chr3 8240319 8240684 -209796474 + L1MB8 LINE L1 5811 6177 -1 252 0 0 0 chr3 8241486 8241514 -209795644 + (T)n Simple_repeat Simple_repeat 1 28 0 333 332 109 31 chr3 8241533 8241726 -209795432 - MER102b DNA MER1_type -6 335 128 236 311 133 0 chr3 8242398 8242488 -209794670 - MIR3 SINE MIR -93 115 14 3803 117 21 54 chr3 8245992 8246693 -209790465 + L1MA5A LINE L1 5619 6296 -1 4388 80 173 49 chr3 8246862 8247597 -209789561 - LTR12 LTR ERV1 0 826 1 442 0 0 33 chr3 8247768 8247828 -209789330 + (TA)n Simple_repeat Simple_repeat 2 59 0 1583 196 0 16 chr3 8248116 8248428 -209788730 + AluJo SINE Alu 1 307 -5 595 131 0 0 chr3 8248579 8248663 -209788495 - LTR12 LTR ERV1 -151 563 480 306 297 17 0 chr3 8248663 8248781 -209788377 - LTR30 LTR ERV1 -79 643 524 842 57 205 0 chr3 8248781 8248903 -209788255 - LTR12 LTR ERV1 -456 258 112 329 299 18 18 chr3 8248903 8249107 -209788051 + (TA)n Simple_repeat Simple_repeat 1 204 0 4356 32 2 2 chr3 8249203 8249698 -209787460 - SVA Other Other -17 1369 875 623 255 134 89 chr3 8249709 8249962 -209787196 + L1MC5 LINE L1 6711 6951 -1010 360 0 0 0 chr3 8249962 8250002 -209787156 + (TG)n Simple_repeat Simple_repeat 1 40 0 623 255 134 89 chr3 8250002 8250254 -209786904 + L1MC5 LINE L1 6951 7239 -722 2373 172 73 36 chr3 8250302 8250889 -209786269 - L1MB7 LINE L1 -20 6164 5556 753 241 42 31 chr3 8250877 8251138 -209786020 + L1MC5 LINE L1 7268 7531 -430 * 1613 141 84 0 chr3 8251143 8251332 -209785826 - AluSx SINE Alu 0 333 110 216 0 0 0 chr3 8251332 8251356 -209785802 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1613 141 84 0 chr3 8251356 8251477 -209785681 - AluSx SINE Alu -223 110 1 2641 153 47 10 chr3 8251792 8252277 -209784881 - L1MC1 LINE L1 -9 6324 5822 23 33 0 0 chr3 8252531 8252561 -209784597 + AT_rich Low_complexity Low_complexity 1 30 0 261 316 153 20 chr3 8253328 8253629 -209783529 + MLT1H LTR MaLR 22 362 -187 249 229 0 0 chr3 8253677 8253725 -209783433 + MLT1H LTR MaLR 501 548 -1 248 369 34 45 chr3 8253747 8253923 -209783235 + L2 LINE L2 2931 3104 -168 214 215 141 89 chr3 8254055 8254190 -209782968 + MIR SINE MIR 121 262 0 927 225 63 106 chr3 8254247 8254768 -209782390 - L1MC5 LINE L1 -838 7123 6625 3711 180 12 8 chr3 8254769 8255502 -209781656 - L1MA8 LINE L1 -3 6288 5553 1127 207 152 30 chr3 8255867 8256341 -209780817 - L1MC5 LINE L1 -302 7659 7128 274 167 167 67 chr3 8256366 8256456 -209780702 + L1MC5 LINE L1 6930 7028 -933 191 307 132 44 chr3 8256687 8256801 -209780357 + L2 LINE L2 3172 3295 -18 252 130 0 0 chr3 8257641 8257687 -209779471 + (TATG)n Simple_repeat Simple_repeat 1 46 0 292 306 131 45 chr3 8259512 8259711 -209777447 + MIR SINE MIR 2 217 -45 299 157 333 0 chr3 8260276 8260378 -209776780 + MER103 DNA DNA 16 151 -15 516 267 22 15 chr3 8260398 8260533 -209776625 - MIR SINE MIR -5 257 122 300 23 0 45 chr3 8261688 8261732 -209775426 - L1PA8 LINE L1 -6 6166 6125 306 167 22 11 chr3 8262596 8262686 -209774472 + (TA)n Simple_repeat Simple_repeat 2 92 0 3622 181 16 68 chr3 8264493 8265342 -209771816 + Tigger6a DNA MER2_type 1 805 -278 3381 191 37 4 chr3 8265358 8266066 -209771092 - L1MD1 LINE L1 -7 6629 5899 3133 254 24 41 chr3 8266073 8266728 -209770430 - L1MD1 LINE L1 -1602 4938 4312 5420 18 0 2 chr3 8266728 8267351 -209769807 - L1PA3 LINE L1 0 6155 5534 3133 254 24 41 chr3 8267351 8267933 -209769225 - L1MD1 LINE L1 -2228 4312 3722 * 5294 216 57 25 chr3 8267928 8270146 -209767012 - L1MD1 LINE L1 -4009 2531 18 1065 177 55 19 chr3 8270149 8270420 -209766738 + Tigger6a DNA MER2_type 803 1083 0 196 368 58 0 chr3 8270503 8270590 -209766568 - L2 LINE L2 -33 3280 3189 286 321 18 0 chr3 8270850 8270959 -209766199 - MIR SINE MIR -58 204 94 362 365 207 22 chr3 8271353 8271715 -209765443 + L2 LINE L2 2836 3264 -8 373 288 54 9 chr3 8273284 8273395 -209763763 + L2 LINE L2 3193 3308 -5 206 62 31 0 chr3 8273398 8273430 -209763728 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 299 318 80 66 chr3 8273713 8274062 -209763096 + L3 LINE CR1 1199 1552 -25 300 91 0 0 chr3 8274525 8274569 -209762589 + (TC)n Simple_repeat Simple_repeat 1 44 0 243 306 0 14 chr3 8274569 8274641 -209762517 + MIR SINE MIR 189 259 -3 299 322 43 9 chr3 8275548 8275663 -209761495 + MIR3 SINE MIR 82 200 -8 225 94 0 0 chr3 8276996 8277028 -209760130 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 432 151 226 0 chr3 8277028 8277134 -209760024 - L1MB4 LINE L1 -95 6085 5956 192 443 0 0 chr3 8277300 8277388 -209759770 + L2 LINE L2 3162 3249 -23 24 0 0 0 chr3 8278567 8278591 -209758567 + AT_rich Low_complexity Low_complexity 1 24 0 216 267 0 0 chr3 8278958 8279003 -209758155 + MIR SINE MIR 29 73 -135 1586 241 28 19 chr3 8279928 8280360 -209756798 - MER110 LTR ERV1 -4 487 52 860 181 7 7 chr3 8281184 8281333 -209755825 - FRAM SINE Alu -30 146 1 539 282 6 28 chr3 8282277 8282458 -209754700 - MER5B DNA MER1_type -1 177 1 360 320 53 8 chr3 8282628 8282762 -209754396 - MIR SINE MIR -66 142 34 2050 139 53 11 chr3 8284443 8284803 -209752355 + THE1C LTR MaLR 1 375 0 203 387 43 0 chr3 8286114 8286207 -209750951 + MIR3 SINE MIR 63 159 -49 309 341 73 8 chr3 8286291 8286459 -209750699 - MIR SINE MIR -61 147 10 3327 110 47 4 chr3 8286826 8287316 -209749842 - MER9 LTR ERVK 0 511 1 680 314 65 14 chr3 8287323 8287613 -209749545 - MLT1K LTR MaLR -15 573 269 2208 123 16 21 chr3 8288349 8288722 -209748436 + THE1C LTR MaLR 1 371 -4 212 304 14 0 chr3 8288751 8288820 -209748338 - L2 LINE L2 -1 3271 3202 509 307 46 55 chr3 8289399 8289617 -209747541 - MIR SINE MIR -29 233 18 1650 193 24 24 chr3 8290054 8290463 -209746695 + L1MA10 LINE L1 5924 6332 -2 1857 86 0 0 chr3 8290495 8290753 -209746405 + AluY SINE Alu 50 307 0 1036 198 231 41 chr3 8291306 8291695 -209745463 + MLT2B1 LTR ERVL 6 534 -20 189 0 0 0 chr3 8291742 8291763 -209745395 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 343 0 27 chr3 8292954 8293027 -209744131 + MIR SINE MIR 33 103 -105 180 0 0 0 chr3 8293596 8293616 -209743542 + (T)n Simple_repeat Simple_repeat 1 20 0 276 179 119 15 chr3 8293737 8293804 -209743354 + MLT1I LTR MaLR 336 409 0 230 282 0 137 chr3 8294127 8294251 -209742907 - MER5B DNA MER1_type -3 175 69 584 292 12 6 chr3 8294289 8294457 -209742701 + MIR SINE MIR 93 261 -1 187 270 43 61 chr3 8294562 8294677 -209742481 + L2 LINE L2 3184 3296 -17 4306 36 0 2 chr3 8295364 8295886 -209741272 - L1PA4 LINE L1 -6 6149 5629 10891 31 1 1 chr3 8295886 8297209 -209739949 + L1P LINE L1 4035 5358 -788 540 226 123 7 chr3 8297558 8297704 -209739454 - MER58B DNA MER1_type -4 337 175 25 31 0 0 chr3 8298313 8298345 -209738813 + AT_rich Low_complexity Low_complexity 1 32 0 366 226 0 43 chr3 8298494 8298587 -209738571 - L1MC4 LINE L1 -1340 6702 6614 530 303 142 43 chr3 8300264 8300985 -209736173 - L2 LINE L2 -111 3202 2360 675 296 186 31 chr3 8301810 8302229 -209734929 - MLT1G1 LTR MaLR -36 559 76 1629 148 21 4 chr3 8302302 8302716 -209734442 + L1PA16 LINE L1 5117 5539 -627 1793 133 81 27 chr3 8302716 8303048 -209734110 + L1PA16 LINE L1 5807 6156 -10 269 377 15 8 chr3 8304111 8304241 -209732917 + L2 LINE L2 2238 2368 -946 1027 277 65 34 chr3 8304276 8304720 -209732438 + MLT1C LTR MaLR 10 467 0 451 355 77 31 chr3 8304774 8305126 -209732032 + L2 LINE L2 2480 2847 -467 4988 204 43 19 chr3 8305129 8307129 -209730029 - L1MC2 LINE L1 -10 6334 4295 610 162 8 0 chr3 8307233 8307350 -209729808 - L1MB3 LINE L1 -19 6164 6047 2573 52 0 0 chr3 8307351 8307660 -209729498 - AluY SINE Alu -2 309 1 2027 182 84 25 chr3 8307669 8308147 -209729011 - L1MB3 LINE L1 -1 6182 5677 188 314 20 0 chr3 8308523 8308574 -209728584 + L2 LINE L2 2541 2592 -722 554 154 103 45 chr3 8308744 8308850 -209728308 - L1MCb LINE L1 -4103 2461 2342 1002 211 63 89 chr3 8308850 8309233 -209727925 + MLT1A2 LTR MaLR 1 373 -1 554 154 103 45 chr3 8309233 8309282 -209727876 - L1MCb LINE L1 -4222 2342 2297 5164 179 31 10 chr3 8309292 8310615 -209726543 - L1PA16 LINE L1 0 6166 4810 2307 155 22 89 chr3 8310617 8311209 -209725949 + L1PA16 LINE L1 4265 4816 -1330 * 2832 216 101 56 chr3 8311199 8311389 -209725769 - L1MCb LINE L1 -4260 2304 2124 1860 136 25 0 chr3 8311389 8311697 -209725461 + AluSq SINE Alu 1 315 0 2832 216 101 56 chr3 8311697 8311931 -209725227 - L1MCb LINE L1 -4440 2124 1902 637 54 0 21 chr3 8311931 8312024 -209725134 - L1PA8 LINE L1 0 6172 6082 2832 216 101 56 chr3 8312024 8313725 -209723433 - L1MCb LINE L1 -4662 1902 3 223 345 0 62 chr3 8313778 8313866 -209723292 + L2 LINE L2 2868 2949 -364 3199 138 53 0 chr3 8313866 8314417 -209722741 + LTR19B LTR ERV1 1 580 0 223 345 0 62 chr3 8314417 8314441 -209722717 + L2 LINE L2 2949 2973 -340 184 295 156 8 chr3 8314556 8314678 -209722480 + L2 LINE L2 3144 3283 -30 27 29 0 0 chr3 8316234 8316268 -209720890 + AT_rich Low_complexity Low_complexity 1 34 0 195 129 0 0 chr3 8316788 8316819 -209720339 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1635 57 0 0 chr3 8316891 8317084 -209720074 + AluY SINE Alu 110 302 -9 1057 224 23 0 chr3 8317405 8317624 -209719534 - MER58A DNA MER1_type 0 224 1 638 214 53 78 chr3 8317634 8317840 -209719318 - MER3 DNA MER1_type -1 208 8 281 224 0 53 chr3 8318048 8318124 -209719034 + MIR SINE MIR 112 183 -79 470 362 25 5 chr3 8318224 8318423 -209718735 + MIR SINE MIR 42 244 -18 21 0 0 0 chr3 8318538 8318559 -209718599 + AT_rich Low_complexity Low_complexity 1 21 0 270 267 22 44 chr3 8319022 8319112 -209718046 + MER81 DNA DNA 27 114 0 1552 175 22 56 chr3 8319277 8319597 -209717561 + AluJo SINE Alu 1 309 -3 268 163 82 0 chr3 8320035 8320084 -209717074 - MER5B DNA MER1_type -3 175 123 2575 102 66 31 chr3 8320092 8320259 -209716899 + L1PA10 LINE L1 5730 5890 -278 2243 114 0 3 chr3 8320259 8320565 -209716593 + AluSg SINE Alu 1 305 -5 2575 102 66 31 chr3 8320565 8320820 -209716338 + L1PA10 LINE L1 5890 6167 -1 331 357 16 8 chr3 8320902 8321031 -209716127 - MER5B DNA MER1_type -48 130 1 264 30 0 0 chr3 8321063 8321096 -209716062 + (CA)n Simple_repeat Simple_repeat 1 33 0 226 275 116 0 chr3 8321104 8321173 -209715985 + MIR SINE MIR 39 115 -93 1837 151 48 12 chr3 8322664 8322995 -209714163 + MER2 DNA MER2_type 2 344 0 543 194 73 0 chr3 8325255 8325379 -209711779 - L1MA9 LINE L1 0 6312 6180 2293 102 0 0 chr3 8325405 8325708 -209711450 + AluSc SINE Alu 1 303 -6 263 317 41 8 chr3 8325736 8325859 -209711299 + MIR SINE MIR 136 262 0 2123 70 0 3 chr3 8326724 8327011 -209710147 - L1PA5 LINE L1 0 6154 5869 576 221 8 31 chr3 8328197 8328324 -209708834 + MER21B LTR ERV1 343 466 -397 29 28 0 0 chr3 8328874 8328910 -209708248 + AT_rich Low_complexity Low_complexity 1 36 0 2399 253 42 39 chr3 8330100 8331932 -209705226 + L1MCc LINE L1 807 2906 -4035 2240 98 3 0 chr3 8331932 8332237 -209704921 - AluSp SINE Alu -5 308 3 2399 253 42 39 chr3 8332237 8333273 -209703885 + L1MCc LINE L1 2906 3937 -3004 2264 97 20 0 chr3 8333279 8333577 -209703581 + AluSx SINE Alu 3 306 -6 3486 159 65 11 chr3 8333579 8334241 -209702917 + L1MC1 LINE L1 5635 6332 -1 374 341 33 76 chr3 8334275 8334395 -209702763 + L2 LINE L2 2876 2985 -328 2560 45 0 3 chr3 8334395 8334704 -209702454 - AluY SINE Alu -3 308 1 374 341 33 76 chr3 8334704 8334794 -209702364 + L2 LINE L2 2985 3077 -236 23 0 0 0 chr3 8334927 8334950 -209702208 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr3 8334951 8334974 -209702184 + (T)n Simple_repeat Simple_repeat 1 23 0 801 192 7 0 chr3 8334980 8335126 -209702032 + L1ME2 LINE L1 5452 5598 -735 647 165 0 0 chr3 8335138 8335259 -209701899 - L1MC/D LINE L1 -2542 5453 5333 369 262 197 35 chr3 8336444 8336902 -209700256 - MLT1H1 LTR MaLR -6 588 1 22 0 0 0 chr3 8337249 8337271 -209699887 + AT_rich Low_complexity Low_complexity 1 22 0 1901 64 0 49 chr3 8337323 8337587 -209699571 - AluY SINE Alu -13 298 48 515 253 123 30 chr3 8337758 8338027 -209699131 + MER46C DNA MER2_type 1 294 -44 243 227 149 58 chr3 8338059 8338213 -209698945 - MIR SINE MIR 0 262 95 26 0 0 0 chr3 8339524 8339550 -209697608 + AT_rich Low_complexity Low_complexity 1 26 0 3535 225 45 24 chr3 8340162 8341068 -209696090 - MER45B DNA AcHobo -27 1013 89 430 314 31 63 chr3 8342724 8342947 -209694211 - MIR SINE MIR -31 231 16 270 253 21 84 chr3 8343715 8343810 -209693348 - L2 LINE L2 -2 3311 3223 773 204 25 6 chr3 8343849 8344006 -209693152 + MER97a DNA MER1_type? 20 179 -715 976 261 65 36 chr3 8344044 8344492 -209692666 + L1ME2 LINE L1 5685 6145 -19 438 108 0 0 chr3 8344750 8344815 -209692343 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2350 105 0 0 chr3 8344978 8345283 -209691875 - AluSc SINE Alu -4 305 1 180 0 0 0 chr3 8346010 8346030 -209691128 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 90 3 3 chr3 8346121 8346421 -209690737 - AluSx SINE Alu -2 310 11 22 35 0 0 chr3 8346689 8346718 -209690440 + AT_rich Low_complexity Low_complexity 1 29 0 1593 213 101 0 chr3 8346845 8347211 -209689947 + MLT1A2-int LTR MaLR 1333 1735 0 233 212 197 0 chr3 8347211 8347277 -209689881 + MLT1A2 LTR MaLR 1 79 -295 340 309 0 0 chr3 8347317 8347414 -209689744 + MLT1A2 LTR MaLR 60 156 -218 756 184 21 154 chr3 8347445 8347679 -209689479 + MLT1A2 LTR MaLR 173 374 0 407 335 6 29 chr3 8347723 8347893 -209689265 - MER5A DNA MER1_type -23 166 1 442 327 17 14 chr3 8347944 8348130 -209689028 + MIR SINE MIR 25 209 -53 293 331 182 7 chr3 8348302 8348456 -209688702 - MIR SINE MIR -15 247 67 528 284 91 33 chr3 8349562 8349805 -209687353 - MIR SINE MIR -4 258 2 210 274 19 57 chr3 8350500 8350606 -209686552 - MIR SINE MIR -54 208 107 216 224 17 17 chr3 8351132 8351190 -209685968 + CT-rich Low_complexity Low_complexity 2 59 0 1654 142 54 85 chr3 8351455 8351842 -209685316 - THE1C LTR MaLR 0 375 1 1926 175 0 0 chr3 8352238 8352546 -209684612 - AluSx SINE Alu -4 308 1 2201 105 0 32 chr3 8352966 8353281 -209683877 + AluSg1 SINE Alu 1 305 -4 1488 214 61 12 chr3 8354325 8354667 -209682491 + MLT1A1 LTR MaLR 1 359 -6 737 273 16 0 chr3 8355228 8355411 -209681747 + MER58A DNA MER1_type 1 186 -38 793 201 17 6 chr3 8355426 8355605 -209681553 - L1MD1 LINE L1 -8 6234 6054 2851 188 35 25 chr3 8355616 8355708 -209681450 - L1MD1 LINE L1 -252 5990 5900 2406 123 17 3 chr3 8355708 8356067 -209681091 + THE1B LTR MaLR 1 364 0 2851 188 35 25 chr3 8356067 8356640 -209680518 - L1MD1 LINE L1 -342 5900 5319 1906 178 73 8 chr3 8356839 8357209 -209679949 + MSTD LTR MaLR 1 394 -2 5502 263 68 38 chr3 8357213 8358896 -209678262 + MSTD-int LTR MaLR 2 1735 0 1868 176 92 0 chr3 8358896 8359255 -209677903 + MSTD LTR MaLR 1 392 -4 22 56 0 0 chr3 8359598 8359634 -209677524 + AT_rich Low_complexity Low_complexity 1 36 0 464 281 103 50 chr3 8360332 8360574 -209676584 + MIR SINE MIR 5 259 -3 370 152 38 13 chr3 8360758 8360837 -209676321 + LTR56 LTR ERV1 349 429 -16 264 154 0 0 chr3 8361679 8361731 -209675427 + (TG)n Simple_repeat Simple_repeat 1 52 0 321 360 71 22 chr3 8361758 8361983 -209675175 - L3 LINE CR1 -159 1418 1183 422 314 41 41 chr3 8362139 8362359 -209674799 - MIR SINE MIR -37 225 6 327 49 0 0 chr3 8362800 8362841 -209674317 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 0 40 0 chr3 8362909 8362934 -209674224 + (TTA)n Simple_repeat Simple_repeat 2 27 0 684 198 152 5 chr3 8362934 8363131 -209674027 - MER5C DNA MER1_type -47 277 52 1723 186 3 0 chr3 8363437 8363733 -209673425 - AluJo SINE Alu -11 301 5 301 268 86 86 chr3 8364182 8364391 -209672767 - L1ME3A LINE L1 -283 5887 5679 355 294 73 23 chr3 8364448 8364737 -209672421 - L1ME3A LINE L1 -584 5582 5271 334 284 35 103 chr3 8366266 8366498 -209670660 - L3 LINE CR1 -518 1059 844 192 363 55 11 chr3 8366661 8366752 -209670406 - L3 LINE CR1 -11 1566 1472 201 264 114 36 chr3 8366838 8366978 -209670180 + MIR SINE MIR 46 196 -66 2002 108 0 81 chr3 8367208 8367542 -209669616 + AluSx SINE Alu 1 307 -5 395 250 167 14 chr3 8368057 8368201 -209668957 + MER5A DNA MER1_type 4 169 -20 198 375 0 0 chr3 8368227 8368299 -209668859 - MER5B DNA MER1_type -60 118 47 294 388 50 0 chr3 8369153 8369313 -209667845 - MIR3 SINE MIR -1 207 40 211 356 46 11 chr3 8369320 8369407 -209667751 + L2 LINE L2 2443 2532 -782 336 235 118 78 chr3 8369439 8369643 -209667515 + L2 LINE L2 2833 3044 -228 440 200 12 0 chr3 8369783 8369868 -209667290 + MER94 DNA DNA 1 86 -48 860 144 51 20 chr3 8370099 8370294 -209666864 + L1MA5 LINE L1 6100 6300 0 48 18 0 0 chr3 8370297 8370352 -209666806 + AT_rich Low_complexity Low_complexity 1 55 0 301 230 23 46 chr3 8371048 8371135 -209666023 + MER112 DNA MER1_type 1 85 -175 189 250 0 0 chr3 8371137 8371197 -209665961 + (CATA)n Simple_repeat Simple_repeat 1 60 0 182 355 47 12 chr3 8371390 8371562 -209665596 - L2 LINE L2 -1108 2206 2029 225 287 126 35 chr3 8371633 8371720 -209665438 + L2 LINE L2 3193 3287 -26 2061 223 123 55 chr3 8371915 8372658 -209664500 + LTR50 LTR ERVL 1 793 -2 4590 86 12 80 chr3 8372831 8373481 -209663677 + L1PB1 LINE L1 5193 5776 -375 189 0 0 0 chr3 8373481 8373502 -209663656 + (CA)n Simple_repeat Simple_repeat 1 21 0 4590 86 12 80 chr3 8373502 8373700 -209663458 + L1PB1 LINE L1 5776 5986 -165 825 293 26 7 chr3 8373708 8374015 -209663143 + L1M4 LINE L1 2272 2584 -3562 5312 142 17 5 chr3 8374068 8375062 -209662096 + L1PA16 LINE L1 5128 6133 -33 3261 138 24 29 chr3 8375202 8375791 -209661367 - LTR60 LTR ERV1 0 586 1 273 184 126 0 chr3 8375853 8375956 -209661202 + HAL1b LINE L1 746 861 -487 2699 16 3 3 chr3 8376185 8376490 -209660668 + AluY SINE Alu 1 305 -6 490 253 123 0 chr3 8376596 8376750 -209660408 + MLT1F1 LTR MaLR 9 181 -386 1181 153 18 35 chr3 8376795 8376808 -209660350 - Tigger1 DNA MER2_type -1 2417 2405 3070 103 41 0 chr3 8376808 8377243 -209659915 + MLT2A2 LTR ERVL 1 453 0 1181 153 18 35 chr3 8377243 8377457 -209659701 - Tigger1 DNA MER2_type -13 2405 2194 320 296 0 0 chr3 8377497 8377595 -209659563 + L1M4 LINE L1 2592 2689 -3457 560 258 85 25 chr3 8377610 8378045 -209659113 - L1MEc LINE L1 -3923 2473 2013 461 233 85 51 chr3 8378197 8378373 -209658785 - MLT1K LTR MaLR -34 554 373 24 0 0 0 chr3 8378395 8378419 -209658739 + AT_rich Low_complexity Low_complexity 1 24 0 2096 203 21 77 chr3 8378423 8378994 -209658164 - LTR8 LTR ERV1 0 691 153 5167 132 24 5 chr3 8379016 8380206 -209656952 - L1PA16 LINE L1 -11 6155 4981 1786 112 73 0 chr3 8380207 8380493 -209656665 - LTR49 LTR ERV1 -288 307 1 391 250 85 51 chr3 8380775 8380951 -209656207 + MLT1K LTR MaLR 373 554 -34 351 243 29 10 chr3 8382803 8382906 -209654252 + MER103 DNA DNA 55 159 -7 290 316 51 0 chr3 8383601 8383680 -209653478 + MIR SINE MIR 44 126 -82 350 231 51 0 chr3 8383931 8384009 -209653149 - MIR SINE MIR -16 246 165 209 278 122 11 chr3 8384555 8384645 -209652513 - L2 LINE L2 -35 3237 3138 12783 151 35 14 chr3 8384783 8386985 -209650173 + Tigger4(Zombi) DNA MER2_type 1 2248 -483 43730 35 9 3 chr3 8386985 8393100 -209644058 - L1PA3 LINE L1 -5 6150 7 2690 115 33 102 chr3 8393100 8393647 -209643511 + Tigger4(Zombi) DNA MER2_type 2222 2730 -1 326 348 11 50 chr3 8393740 8393936 -209643222 + MIR SINE MIR 1 191 -17 204 125 0 0 chr3 8394693 8394725 -209642433 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1893 217 24 78 chr3 8395045 8395580 -209641578 - MLT2B3 LTR ERVL -48 506 1 1274 158 74 74 chr3 8395790 8396088 -209641070 + AluJb SINE Alu 1 298 -14 2448 86 0 0 chr3 8396180 8396482 -209640676 + AluY SINE Alu 1 302 -9 582 194 37 0 chr3 8396999 8397107 -209640051 - MLT2B3 LTR ERVL -72 482 371 358 82 0 0 chr3 8397179 8397228 -209639930 - MLT2B1 LTR ERVL 0 520 472 208 266 16 16 chr3 8397238 8397302 -209639856 + L2 LINE L2 3246 3309 -4 250 309 53 63 chr3 8397982 8398189 -209638969 - L2 LINE L2 0 3313 3109 357 331 105 6 chr3 8398222 8398403 -209638755 - L2 LINE L2 -358 2956 2758 2528 292 105 117 chr3 8398413 8399519 -209637639 - L2 LINE L2 -840 2474 1356 780 223 50 59 chr3 8399519 8399739 -209637419 - MER58A DNA MER1_type -1 223 6 2528 292 105 117 chr3 8399739 8399777 -209637381 - L2 LINE L2 -1958 1356 1319 1595 213 45 8 chr3 8399777 8400129 -209637029 + MLT1A1 LTR MaLR 1 365 0 2528 292 105 117 chr3 8400129 8401241 -209635917 - L2 LINE L2 -1995 1319 28 325 286 0 0 chr3 8401875 8401959 -209635199 + MER94 DNA DNA 5 88 -46 1321 343 40 17 chr3 8403019 8403593 -209633565 + L1PA16 LINE L1 788 1374 -6200 313 246 127 18 chr3 8403649 8403759 -209633399 + L1PA16 LINE L1 2176 2297 -5277 282 346 0 0 chr3 8403738 8403816 -209633342 + L1PA16 LINE L1 2104 2181 -5400 * 13008 231 29 16 chr3 8404475 8409816 -209627342 + L1PA16 LINE L1 2225 7602 -2 713 296 83 53 chr3 8409913 8410288 -209626870 + MLT1I LTR MaLR 4 389 -20 542 168 16 16 chr3 8410370 8410495 -209626663 + L1MA10 LINE L1 6209 6333 -1 279 0 0 0 chr3 8410859 8410890 -209626268 + (CA)n Simple_repeat Simple_repeat 2 32 0 2008 173 11 6 chr3 8410947 8411300 -209625858 - THE1A LTR MaLR 0 355 1 11203 103 17 2 chr3 8411300 8412856 -209624302 - THE1A-int LTR MaLR 0 1580 2 2202 138 23 6 chr3 8412857 8413206 -209623952 - THE1A LTR MaLR 0 355 1 261 370 55 0 chr3 8413506 8413652 -209623506 - MIR3 SINE MIR -1 207 54 264 215 15 31 chr3 8414819 8414884 -209622274 - L1PB4 LINE L1 -90 6066 6003 27 49 0 0 chr3 8414903 8414944 -209622214 + AT_rich Low_complexity Low_complexity 1 41 0 2466 62 0 10 chr3 8415312 8415621 -209621537 + AluY SINE Alu 1 306 -5 395 252 72 29 chr3 8416301 8416440 -209620718 - L1PB4 LINE L1 0 6156 6012 883 135 10 91 chr3 8417023 8417231 -209619927 - L1MA10 LINE L1 -2 6332 6142 3998 189 52 26 chr3 8417238 8418903 -209618255 - L1MB1 LINE L1 -135 6033 4316 221 130 43 58 chr3 8419548 8419617 -209617541 + (TATAG)n Simple_repeat Simple_repeat 3 70 0 28 29 0 0 chr3 8420840 8420875 -209616283 + AT_rich Low_complexity Low_complexity 1 35 0 196 29 29 29 chr3 8421768 8421802 -209615356 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr3 8422350 8422373 -209614785 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 8422408 8422429 -209614729 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr3 8422530 8422589 -209614569 + AT_rich Low_complexity Low_complexity 1 59 0 263 125 42 52 chr3 8422631 8422727 -209614431 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 216 387 42 17 chr3 8422806 8422925 -209614233 + MER5A DNA MER1_type 68 189 0 280 368 114 14 chr3 8422965 8423185 -209613973 + L2 LINE L2 2805 3046 -226 353 326 19 49 chr3 8423204 8423441 -209613717 - MIR SINE MIR 0 262 35 11474 203 55 25 chr3 8423462 8427002 -209610156 + L1PA16 LINE L1 806 4240 -2629 6975 61 26 1 chr3 8427002 8427877 -209609281 - MER11D LTR ERVK 0 897 1 11474 203 55 25 chr3 8427877 8428396 -209608762 + L1PA16 LINE L1 4240 4742 -2127 234 0 0 0 chr3 8428396 8428422 -209608736 + (CA)n Simple_repeat Simple_repeat 1 26 0 11474 203 55 25 chr3 8428422 8430170 -209606988 + L1PA16 LINE L1 4742 6860 -9 21 0 0 0 chr3 8430174 8430195 -209606963 + AT_rich Low_complexity Low_complexity 1 21 0 371 322 11 72 chr3 8431695 8431875 -209605283 + MIR SINE MIR 23 191 -71 254 203 0 38 chr3 8431978 8432057 -209605101 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 1524 237 68 45 chr3 8432213 8432982 -209604176 + Charlie7 DNA MER1_type 1723 2508 -104 1751 211 35 28 chr3 8433226 8433685 -209603473 - MLT1C LTR MaLR 0 467 6 506 241 165 24 chr3 8435874 8436086 -209601072 + MIR SINE MIR 21 262 0 1926 128 10 7 chr3 8436199 8436495 -209600663 - AluSp SINE Alu -16 297 1 21 0 0 0 chr3 8436601 8436622 -209600536 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 0 chr3 8436679 8436753 -209600405 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 477 328 102 11 chr3 8437566 8437743 -209599415 + MIR SINE MIR 6 198 -64 4207 45 0 0 chr3 8437860 8438390 -209598768 - L1P LINE L1 -2438 3708 3179 2908 23 0 0 chr3 8438383 8438727 -209598431 + L1P LINE L1 3708 4051 -2095 * 226 65 0 0 chr3 8438721 8438752 -209598406 - L1P LINE L1 -2937 3209 3179 * 1256 21 0 0 chr3 8438749 8438894 -209598264 + L1PA3 LINE L1 3712 3856 -2290 11275 24 6 0 chr3 8438894 8440981 -209596177 + L1PA3 LINE L1 4061 6152 -3 21 0 0 0 chr3 8440981 8441002 -209596156 + AT_rich Low_complexity Low_complexity 1 21 0 290 327 63 25 chr3 8441432 8441591 -209595567 + MIR3 SINE MIR 35 199 -9 2040 118 6 43 chr3 8441701 8442023 -209595135 + AluSg SINE Alu 1 310 0 1936 194 24 5 chr3 8442047 8442424 -209594734 - MER44D DNA MER2_type -166 439 1 342 288 149 40 chr3 8443197 8443419 -209593739 - MIR SINE MIR -13 249 4 2359 64 0 10 chr3 8443606 8443901 -209593257 + AluY SINE Alu 1 292 -19 32 43 0 0 chr3 8444802 8444848 -209592310 + AT_rich Low_complexity Low_complexity 1 46 0 369 342 103 40 chr3 8445512 8445784 -209591374 - L3 LINE CR1 -17 1560 1272 189 308 202 30 chr3 8446294 8446492 -209590666 - L3 LINE CR1 -910 667 436 791 299 33 11 chr3 8446912 8447297 -209589861 + LTR16A LTR ERVL 16 450 0 574 105 0 12 chr3 8447926 8448012 -209589146 - AluSg/x SINE Alu -13 296 212 212 322 98 49 chr3 8448193 8448336 -209588822 + MIR SINE MIR 34 183 -79 29 0 0 0 chr3 8448427 8448456 -209588702 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr3 8449598 8449664 -209587494 + AT_rich Low_complexity Low_complexity 1 66 0 241 111 86 19 chr3 8449676 8449838 -209587320 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 31 0 0 chr3 8449838 8449870 -209587288 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 8449960 8450002 -209587156 + AT_rich Low_complexity Low_complexity 1 42 0 2448 122 28 0 chr3 8450538 8450891 -209586267 + THE1B LTR MaLR 1 363 -1 11406 100 4 5 chr3 8450892 8451383 -209585775 + THE1B-int LTR MaLR 1 491 -1089 2201 100 0 28 chr3 8451383 8451703 -209585455 + AluSx SINE Alu 1 311 -1 11406 100 4 5 chr3 8451703 8452792 -209584366 + THE1B-int LTR MaLR 491 1580 0 2160 149 36 14 chr3 8452792 8453148 -209584010 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr3 8453332 8453373 -209583785 + AT_rich Low_complexity Low_complexity 1 41 0 208 139 0 0 chr3 8453896 8453932 -209583226 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 315 411 60 31 chr3 8453996 8454553 -209582605 - L2 LINE L2 -1 3271 2703 677 223 71 62 chr3 8454741 8454952 -209582206 - MER20 DNA MER1_type -5 214 2 471 254 30 45 chr3 8455307 8455441 -209581717 - L2 LINE L2 0 3313 3182 267 403 56 7 chr3 8455436 8455580 -209581578 - MER5A DNA MER1_type -38 151 1 * 299 243 19 0 chr3 8455665 8455753 -209581405 + (TA)n Simple_repeat Simple_repeat 2 94 -12 270 81 0 0 chr3 8455753 8455790 -209581368 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 243 19 0 chr3 8455790 8455804 -209581354 + (TA)n Simple_repeat Simple_repeat 94 106 0 254 289 242 7 chr3 8456321 8456470 -209580688 - MER5A DNA MER1_type 0 189 6 413 231 172 11 chr3 8456614 8456800 -209580358 - L1MC/D LINE L1 -2336 5472 5257 489 264 83 7 chr3 8457070 8457346 -209579812 - MER113 DNA MER1_type? -213 308 12 279 299 0 11 chr3 8457534 8457621 -209579537 + GA-rich Low_complexity Low_complexity 2 87 0 2161 91 31 0 chr3 8457780 8458066 -209579092 - AluSg SINE Alu -15 295 1 468 276 61 33 chr3 8458101 8458282 -209578876 - MIR SINE MIR -61 201 16 21 57 0 0 chr3 8458924 8458959 -209578199 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 8459141 8459161 -209577997 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 807 204 65 27 chr3 8459177 8459363 -209577795 - AluJo SINE Alu -78 234 42 276 236 16 49 chr3 8459578 8459701 -209577457 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 223 241 7 51 chr3 8459648 8459785 -209577373 + (TTTA)n Simple_repeat Simple_repeat 4 134 0 * 265 321 71 36 chr3 8459785 8459897 -209577261 - MIR SINE MIR -116 146 31 308 333 84 33 chr3 8460181 8460394 -209576764 - MIR SINE MIR -31 231 8 2373 35 42 0 chr3 8460508 8460795 -209576363 + AluY SINE Alu 1 299 -12 43808 43 7 0 chr3 8460887 8467003 -209570155 + L1PA3 LINE L1 1 6152 -3 246 174 0 0 chr3 8467953 8467999 -209569159 + (TATG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 8468066 8468088 -209569070 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 345 47 0 0 chr3 8468087 8468130 -209569028 + (TA)n Simple_repeat Simple_repeat 1 43 0 2387 207 31 66 chr3 8468295 8468869 -209568289 - MLT2B3 LTR ERVL 0 554 1 765 249 42 73 chr3 8469659 8469920 -209567238 - MIR SINE MIR -4 258 6 24 77 0 0 chr3 8470998 8471050 -209566108 + AT_rich Low_complexity Low_complexity 1 52 0 193 322 119 25 chr3 8471244 8471362 -209565796 + L2 LINE L2 3180 3308 -5 466 72 14 0 chr3 8471370 8471439 -209565719 + L1MB1 LINE L1 6098 6167 -1 683 317 20 37 chr3 8472275 8472521 -209564637 + MIR SINE MIR 16 257 -5 222 37 0 0 chr3 8472921 8472948 -209564210 + (CATTT)n Simple_repeat Simple_repeat 4 30 0 2150 116 0 0 chr3 8472948 8473232 -209563926 - AluSx SINE Alu -28 284 1 22 0 0 0 chr3 8473234 8473256 -209563902 + AT_rich Low_complexity Low_complexity 1 22 0 285 274 144 14 chr3 8474032 8474178 -209562980 - MIR SINE MIR 0 262 98 1107 268 155 9 chr3 8474549 8475004 -209562154 - MLT1F1 LTR MaLR -40 527 1 2394 157 36 19 chr3 8475763 8476184 -209560974 - MSTC LTR MaLR 0 428 1 288 0 0 0 chr3 8476757 8476789 -209560369 + (T)n Simple_repeat Simple_repeat 1 32 0 524 289 88 21 chr3 8477492 8477731 -209559427 - MLT1L LTR MaLR -211 404 150 1824 156 3 0 chr3 8477937 8478220 -209558938 + AluSg SINE Alu 27 310 0 209 235 0 12 chr3 8478710 8478791 -209558367 + CT-rich Low_complexity Low_complexity 3 82 0 259 292 39 15 chr3 8478868 8478998 -209558160 + LTR67 LTR ERVL 411 543 -14 1731 134 4 19 chr3 8479436 8479704 -209557454 + AluY SINE Alu 43 306 -5 193 239 0 22 chr3 8480866 8480912 -209556246 + L2 LINE L2 3267 3311 -2 4948 191 19 14 chr3 8481074 8481371 -209555787 + L1PA16 LINE L1 4125 4419 -1747 2238 116 3 0 chr3 8481371 8481682 -209555476 - AluSx SINE Alu 0 312 1 4948 191 19 14 chr3 8481682 8482864 -209554294 + L1PA16 LINE L1 4419 5607 -559 1522 103 4 0 chr3 8482863 8483096 -209554062 - L1PA8 LINE L1 -1642 4504 4271 * 6395 101 1 1 chr3 8483096 8483749 -209553409 + L1PA8 LINE L1 4522 5174 -998 337 48 0 48 chr3 8483749 8483811 -209553347 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6395 101 1 1 chr3 8483811 8484803 -209552355 + L1PA8 LINE L1 5173 6172 0 2664 154 0 0 chr3 8484805 8485227 -209551931 + L1PA16 LINE L1 5601 6022 -144 972 96 7 0 chr3 8485282 8485417 -209551741 + L1PA16 LINE L1 6022 6157 -9 359 310 37 61 chr3 8486093 8486338 -209550820 - MIR SINE MIR 0 262 24 204 292 0 0 chr3 8486786 8486834 -209550324 + L2 LINE L2 2679 2726 -588 1521 241 34 0 chr3 8486865 8487218 -209549940 + MLT1A1 LTR MaLR 1 365 0 2410 284 159 40 chr3 8487283 8488460 -209548698 - L2 LINE L2 -339 2975 1622 2113 126 0 0 chr3 8488460 8488754 -209548404 + AluSx SINE Alu 1 294 -18 2410 284 159 40 chr3 8488754 8488894 -209548264 - L2 LINE L2 -1692 1622 1500 306 337 11 0 chr3 8488952 8489047 -209548111 + L2 LINE L2 3168 3263 -9 216 0 0 0 chr3 8489758 8489782 -209547376 + (CA)n Simple_repeat Simple_repeat 2 25 0 6476 153 39 18 chr3 8490099 8490364 -209546794 - Tigger3b DNA MER2_type -1797 1231 973 3538 144 0 0 chr3 8490364 8490886 -209546272 + MER1A DNA MER1_type 2 523 -4 6476 153 39 18 chr3 8490886 8491823 -209545335 - Tigger3b DNA MER2_type -2055 973 4 268 284 28 6 chr3 8492262 8492438 -209544720 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 0 0 0 chr3 8492885 8492914 -209544244 + AT_rich Low_complexity Low_complexity 1 29 0 4724 51 0 0 chr3 8493148 8493718 -209543440 + L1PA5 LINE L1 5572 6141 -13 229 208 0 21 chr3 8494748 8494796 -209542362 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 264 10 101 chr3 8494895 8495103 -209542055 + MIR SINE MIR 61 249 -13 501 263 157 80 chr3 8495599 8496013 -209541145 - MLT1H LTR MaLR 0 549 104 2029 155 0 0 chr3 8497084 8497388 -209539770 + AluSx SINE Alu 1 304 -8 639 240 84 0 chr3 8497393 8497547 -209539611 - MER96 DNA MER1_type? -7 168 2 565 269 92 50 chr3 8497793 8498031 -209539127 + MIR SINE MIR 15 262 0 527 165 12 0 chr3 8498132 8498217 -209538941 + HUERS-P3 LTR ERV1 8830 8915 -4 2591 197 55 8 chr3 8498225 8498754 -209538404 + LTR9B LTR ERV1 7 560 -84 207 0 0 0 chr3 8498754 8498777 -209538381 + (A)n Simple_repeat Simple_repeat 1 23 0 23 78 0 0 chr3 8498976 8499027 -209538131 + AT_rich Low_complexity Low_complexity 1 51 0 1614 163 0 0 chr3 8499898 8500150 -209537008 - AluJb SINE Alu -60 252 1 283 363 88 18 chr3 8500193 8500419 -209536739 + MIR SINE MIR 4 245 -17 329 271 211 31 chr3 8500598 8500940 -209536218 - L2 LINE L2 -181 3091 2690 1414 191 3 53 chr3 8501869 8502151 -209535007 + Tigger7 DNA MER2_type 1 268 -2219 517 178 0 11 chr3 8502153 8502243 -209534915 + Tigger7 DNA MER2_type 2399 2487 -4 183 371 81 32 chr3 8502314 8502438 -209534720 - L2 LINE L2 -20 3252 3123 291 357 68 61 chr3 8502762 8503336 -209533822 - L2 LINE L2 -339 2975 2398 2112 174 22 25 chr3 8503340 8503788 -209533370 + L1MC2 LINE L1 5890 6336 -8 443 297 30 36 chr3 8503843 8504008 -209533150 - L2 LINE L2 -1286 2028 1865 1880 301 28 0 chr3 8504673 8505349 -209531809 + L1MEc LINE L1 40 771 -5625 316 314 51 0 chr3 8505588 8505706 -209531452 + MER5C DNA MER1_type 1 124 -200 246 150 117 0 chr3 8505828 8505888 -209531270 + MER5C DNA MER1_type 257 323 -1 213 39 0 0 chr3 8506444 8506470 -209530688 + (T)n Simple_repeat Simple_repeat 1 26 0 2171 125 0 0 chr3 8507504 8507807 -209529351 - AluSx SINE Alu -9 303 1 2496 87 0 0 chr3 8508035 8508346 -209528812 - AluY SINE Alu 0 311 1 255 288 89 31 chr3 8509052 8509125 -209528033 - MLT1J1 LTR MaLR -184 262 195 226 0 59 0 chr3 8509125 8509159 -209527999 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3345 90 25 0 chr3 8509161 8509607 -209527551 - LTR22A LTR ERVK 0 458 2 255 288 89 31 chr3 8509607 8509721 -209527437 - MLT1J1 LTR MaLR -251 195 61 1034 226 5 5 chr3 8512275 8512479 -209524679 - MER20 DNA MER1_type 0 219 16 351 292 60 43 chr3 8513376 8513561 -209523597 + MLT1K LTR MaLR 399 586 -2 261 150 100 25 chr3 8514883 8514963 -209522195 - L1M4 LINE L1 -1436 4710 4625 433 301 20 7 chr3 8515239 8515392 -209521766 - HERVL LTR ERVL -4025 1629 1475 388 317 40 71 chr3 8515773 8516098 -209521060 - HERVL LTR ERVL -4618 1036 722 1332 298 90 7 chr3 8516660 8517103 -209520055 - MLT2E LTR ERVL -7 621 142 342 349 40 20 chr3 8517259 8517408 -209519750 + MIR SINE MIR 11 162 -100 521 261 25 6 chr3 8517409 8517570 -209519588 + L1MCa LINE L1 156 319 -6245 3247 53 24 40 chr3 8517653 8518108 -209519050 + LTR7 LTR ERV1 1 448 -2 20674 82 9 27 chr3 8518110 8521150 -209516008 + HERVH LTR ERV1 1 2987 -4726 911 135 20 0 chr3 8521144 8521292 -209515866 + HERVH LTR ERV1 3140 3290 -4423 * 3135 133 4 6 chr3 8521282 8521785 -209515373 + HERVH LTR ERV1 3492 3993 -3720 10578 60 7 3 chr3 8521787 8523143 -209514015 + HERVH LTR ERV1 4488 5848 -1865 289 233 101 39 chr3 8523180 8523309 -209513849 + L1MCa LINE L1 744 880 -5165 1918 105 94 0 chr3 8523320 8523597 -209513561 + AluY SINE Alu 1 303 -8 3624 247 59 51 chr3 8523602 8523811 -209513347 + L1MCa LINE L1 969 1175 -5389 2471 76 0 13 chr3 8523811 8524126 -209513032 + AluY SINE Alu 1 311 0 3624 247 59 51 chr3 8524126 8527025 -209510133 + L1MCa LINE L1 1175 4289 -2275 257 231 0 0 chr3 8527028 8527080 -209510078 + LTR30 LTR ERV1 1 52 -670 1162 165 134 27 chr3 8527080 8527341 -209509817 + pTR5 LTR ERV1 1395 1683 -755 1332 191 52 30 chr3 8527353 8527682 -209509476 + L1MC2 LINE L1 5999 6334 -10 186 103 0 0 chr3 8527810 8527839 -209509319 + (TTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 8528743 8528773 -209508385 + AT_rich Low_complexity Low_complexity 1 30 0 334 63 0 127 chr3 8529646 8529709 -209507449 - MLT2D LTR ERVL -11 403 349 7734 61 4 0 chr3 8529830 8530839 -209506319 + L1P LINE L1 4391 5403 -743 1860 166 63 23 chr3 8530850 8531200 -209505958 - MLT2D LTR ERVL -50 364 1 209 336 25 8 chr3 8531202 8531324 -209505834 + MIR SINE MIR 139 262 0 25 51 0 0 chr3 8532089 8532128 -209505030 + AT_rich Low_complexity Low_complexity 1 39 0 2161 181 60 2 chr3 8532525 8532961 -209504197 + LOR1b LTR ERV1 1 461 0 21 0 0 0 chr3 8533139 8533160 -209503998 + AT_rich Low_complexity Low_complexity 1 21 0 236 239 90 15 chr3 8534000 8534067 -209503091 + MIR SINE MIR 68 139 -123 608 293 54 16 chr3 8534424 8534666 -209502492 - MIR SINE MIR -6 256 6 602 249 106 67 chr3 8534740 8535208 -209501950 + MLT1H LTR MaLR 29 549 0 346 198 86 43 chr3 8535230 8535346 -209501812 - L1ME4a LINE L1 -1 6120 6000 234 244 0 0 chr3 8535373 8535418 -209501740 - MIR SINE MIR -23 239 195 454 329 87 0 chr3 8535658 8535819 -209501339 - MIR SINE MIR -87 175 1 639 213 0 8 chr3 8536090 8536212 -209500946 + FLAM_A SINE Alu 5 125 -8 321 208 83 104 chr3 8537468 8537531 -209499627 + MER5B DNA MER1_type 1 64 -114 2301 119 0 0 chr3 8537531 8537843 -209499315 + AluSx SINE Alu 1 312 0 321 208 83 104 chr3 8537843 8537923 -209499235 + MER5B DNA MER1_type 64 141 -37 490 296 88 39 chr3 8538111 8538371 -209498787 + MLT1L LTR MaLR 123 395 -220 308 273 76 8 chr3 8538417 8538549 -209498609 + MLT1L LTR MaLR 466 606 -9 22 0 0 0 chr3 8539025 8539047 -209498111 + AT_rich Low_complexity Low_complexity 1 22 0 434 235 0 12 chr3 8539178 8539263 -209497895 + L2 LINE L2 3230 3313 0 186 268 155 0 chr3 8539640 8539711 -209497447 - L2 LINE L2 -10 3303 3222 625 309 18 0 chr3 8540197 8540365 -209496793 - MER5B DNA MER1_type 0 178 8 27 0 0 0 chr3 8540725 8540752 -209496406 + AT_rich Low_complexity Low_complexity 1 27 0 305 194 60 0 chr3 8541457 8541524 -209495634 - MER58 DNA MER1_type -13 2407 2337 632 259 115 8 chr3 8542404 8542647 -209494511 + MER5C DNA MER1_type 1 269 -55 3371 111 31 0 chr3 8542811 8543287 -209493871 + PABL_A LTR ERV1 1 491 -169 2087 112 36 91 chr3 8543287 8543491 -209493667 - THE1B LTR MaLR -1 363 188 2197 131 0 0 chr3 8543491 8543803 -209493355 - AluSx SINE Alu 0 312 1 2087 112 36 91 chr3 8543803 8543982 -209493176 - THE1B LTR MaLR -176 188 1 11336 101 12 3 chr3 8543982 8545548 -209491610 - THE1B-int LTR MaLR 0 1580 1 2239 138 8 24 chr3 8545548 8545918 -209491240 - THE1B LTR MaLR 0 364 1 1222 87 29 6 chr3 8545918 8546090 -209491068 + PABL_A LTR ERV1 485 660 0 274 241 72 0 chr3 8546129 8546212 -209490946 - MIR SINE MIR -70 192 104 487 236 26 47 chr3 8546212 8546349 -209490809 - LTR37B LTR ERV1 0 468 335 4072 122 19 2 chr3 8546349 8546973 -209490185 - MER41B LTR ERV1 0 635 1 487 236 26 47 chr3 8546973 8547026 -209490132 - LTR37B LTR ERV1 -133 335 282 796 164 111 58 chr3 8547058 8547247 -209489911 + MER93b LTR ERV1 27 225 -148 1807 194 83 35 chr3 8547445 8548072 -209489086 + MER39 LTR ERV1 8 707 0 637 219 60 23 chr3 8548081 8548298 -209488860 - MER39 LTR ERV1 -436 271 6 347 56 42 14 chr3 8548504 8548576 -209488582 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 7568 30 0 0 chr3 8548576 8549472 -209487686 - L1PA3 LINE L1 -6 6149 5254 514 264 21 0 chr3 8549481 8549621 -209487537 + MIR SINE MIR 86 228 -34 468 220 83 15 chr3 8551866 8551998 -209485160 - MER104 DNA Tc2 -18 162 22 38 0 0 0 chr3 8552147 8552185 -209484973 + AT_rich Low_complexity Low_complexity 1 38 0 277 357 41 12 chr3 8552379 8552550 -209484608 + MLT1K LTR MaLR 144 319 -269 561 113 0 0 chr3 8552634 8552714 -209484444 + AluS SINE Alu 1 80 -233 2027 128 38 0 chr3 8552716 8553005 -209484153 + AluSq SINE Alu 14 313 0 309 262 99 29 chr3 8553006 8553178 -209483980 + MLT1K LTR MaLR 405 588 0 202 326 78 54 chr3 8553263 8553392 -209483766 + L2 LINE L2 3182 3313 0 186 333 0 48 chr3 8553580 8553643 -209483515 + L2 LINE L2 3200 3259 -13 1630 113 254 29 chr3 8554322 8554668 -209482490 - MSTA LTR MaLR -2 426 3 306 344 76 18 chr3 8555422 8555646 -209481512 - MIR SINE MIR -14 248 12 340 318 40 27 chr3 8556422 8556570 -209480588 - MIR SINE MIR -12 250 101 195 431 29 0 chr3 8556694 8556796 -209480362 - MIR SINE MIR -97 165 61 455 0 18 0 chr3 8558123 8558178 -209478980 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 248 330 40 10 chr3 8558189 8558289 -209478869 + L2 LINE L2 3210 3312 -1 527 260 130 6 chr3 8558567 8558736 -209478422 - L3 LINE CR1 -76 1501 1312 1986 224 41 64 chr3 8560284 8560850 -209476308 + MLT2B3 LTR ERVL 2 554 0 230 224 15 15 chr3 8561901 8561968 -209475190 + (TA)n Simple_repeat Simple_repeat 1 67 0 717 252 13 8 chr3 8561968 8562129 -209475029 - MIR SINE MIR -67 141 23 1361 222 11 40 chr3 8562129 8562480 -209474678 - MER58B DNA MER1_type 0 341 1 717 252 13 8 chr3 8562480 8562498 -209474660 - MIR SINE MIR -185 23 7 328 246 339 0 chr3 8562509 8562639 -209474519 + MER5A DNA MER1_type 16 189 0 413 201 132 35 chr3 8562832 8562976 -209474182 - MER103 DNA DNA -7 159 2 334 246 0 154 chr3 8563226 8563401 -209473757 + MIR SINE MIR 96 243 -19 894 224 16 0 chr3 8563488 8563680 -209473478 + MER3 DNA MER1_type 15 209 0 206 391 126 11 chr3 8564549 8564899 -209472259 + L2 LINE L2 2369 2758 -556 2271 206 57 7 chr3 8565333 8565769 -209471389 - LTR32 LTR ERVL 0 471 14 284 310 65 60 chr3 8565769 8565953 -209471205 + L2 LINE L2 3087 3271 -1 182 156 0 0 chr3 8566936 8566968 -209470190 - L2 LINE L2 -1 3271 3240 361 309 55 36 chr3 8567077 8567297 -209469861 - MLT1K LTR MaLR -2 586 363 1957 221 54 74 chr3 8567415 8568194 -209468964 - LTR28 LTR ERV1 0 1020 109 397 241 207 13 chr3 8568195 8568356 -209468802 - LTR28 LTR ERV1 -286 178 1 1285 190 146 24 chr3 8569090 8569516 -209467642 - LTR54B LTR ERV1 -2 496 19 191 263 25 38 chr3 8569672 8569752 -209467406 + L2 LINE L2 3150 3228 -44 1993 139 11 0 chr3 8569813 8570100 -209467058 + AluSq SINE Alu 1 290 -23 1094 194 18 14 chr3 8570101 8570318 -209466840 + MER20 DNA MER1_type 2 219 0 246 333 9 9 chr3 8570332 8570437 -209466721 - MIR SINE MIR -111 151 47 2134 92 26 36 chr3 8572364 8572669 -209464489 - AluSp SINE Alu -11 302 1 2102 190 19 12 chr3 8572918 8573329 -209463829 - MLT2D LTR ERVL 0 414 1 1553 155 107 0 chr3 8574051 8574340 -209462818 - AluSx SINE Alu 0 320 5 195 357 18 65 chr3 8574524 8574692 -209462466 - L2 LINE L2 -225 3047 2888 2206 99 27 0 chr3 8575531 8575823 -209461335 - AluSg1 SINE Alu -9 300 1 1768 190 116 9 chr3 8576164 8576585 -209460573 - MLT1C LTR MaLR -1 466 1 329 373 42 0 chr3 8577488 8577630 -209459528 - MIR3 SINE MIR -25 183 36 572 237 0 0 chr3 8577809 8577923 -209459235 - Charlie1 DNA MER1_type 0 2761 2648 2395 197 52 41 chr3 8577927 8578536 -209458622 - L1MB8 LINE L1 -2 6245 5630 2781 265 27 7 chr3 8578543 8579470 -209457688 - L1MB8 LINE L1 -2516 3699 2751 1805 201 18 0 chr3 8579470 8579808 -209457350 + MER2 DNA MER2_type 1 344 0 2781 265 27 7 chr3 8579808 8579842 -209457316 - L1MB8 LINE L1 -3464 2751 2719 2055 132 0 10 chr3 8579849 8580160 -209456998 - MER50 LTR ERV1 -30 704 397 1565 117 8 25 chr3 8580193 8580433 -209456725 - MER50 LTR ERV1 -498 236 1 1107 259 67 18 chr3 8580433 8581249 -209455909 - L1MB8 LINE L1 -3493 2722 1868 4553 250 63 55 chr3 8581381 8582317 -209454841 - L1M4c LINE L1 -4371 2586 1658 2530 68 0 0 chr3 8582317 8582626 -209454532 - AluY SINE Alu -2 309 1 4553 250 63 55 chr3 8582626 8583877 -209453281 - L1M4c LINE L1 -5299 1658 2 861 201 22 93 chr3 8583878 8584146 -209453012 - Charlie1 DNA MER1_type -2512 249 1 260 51 0 26 chr3 8584423 8584462 -209452696 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 182 0 0 chr3 8586065 8586109 -209451049 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 582 343 60 8 chr3 8586934 8587182 -209449976 - MIR SINE MIR -1 261 1 255 308 0 0 chr3 8587199 8587264 -209449894 + A-rich Low_complexity Low_complexity 4 68 0 315 271 134 53 chr3 8587269 8587516 -209449642 + HAL1 LINE L1 1011 1277 -1230 443 308 8 0 chr3 8587520 8587653 -209449505 + GA-rich Low_complexity Low_complexity 3 136 0 21 36 0 0 chr3 8587680 8587708 -209449450 + AT_rich Low_complexity Low_complexity 1 28 0 520 253 148 13 chr3 8587735 8587964 -209449194 + MIR SINE MIR 1 260 -2 238 330 0 0 chr3 8588864 8588952 -209448206 + (TG)n Simple_repeat Simple_repeat 1 88 0 997 206 123 83 chr3 8589197 8589547 -209447611 + MLT1A1 LTR MaLR 1 364 -1 458 298 115 34 chr3 8590053 8590288 -209446870 - MIR SINE MIR 0 262 9 2264 115 0 0 chr3 8590292 8590597 -209446561 - AluSx SINE Alu -7 305 1 2164 113 7 0 chr3 8590896 8591189 -209445969 - AluSx SINE Alu -13 299 5 2123 110 0 7 chr3 8592352 8592651 -209444507 - AluSx SINE Alu -15 297 1 225 182 0 0 chr3 8593109 8593164 -209443994 + T-rich Low_complexity Low_complexity 1 55 0 512 277 36 0 chr3 8593391 8593528 -209443630 - MER45B DNA AcHobo -786 254 113 410 268 93 22 chr3 8593700 8593883 -209443275 + MER117 DNA MER1_type 2 197 0 26 30 0 0 chr3 8595560 8595593 -209441565 + AT_rich Low_complexity Low_complexity 1 33 0 183 246 49 16 chr3 8595689 8595750 -209441408 + MIR3 SINE MIR 118 180 -28 21 36 0 0 chr3 8596754 8596782 -209440376 + AT_rich Low_complexity Low_complexity 1 28 0 302 345 48 12 chr3 8596963 8597131 -209440027 - HAL1b LINE L1 -438 910 737 2474 52 0 0 chr3 8597779 8598093 -209439065 - AluY SINE Alu 0 314 1 249 323 16 16 chr3 8598112 8598239 -209438919 - HAL1 LINE L1 -837 1670 1544 1712 126 100 0 chr3 8598513 8598782 -209438376 + AluJb SINE Alu 1 296 -16 2096 109 0 0 chr3 8598971 8599246 -209437912 - AluSc SINE Alu -18 291 17 423 274 36 48 chr3 8599503 8599671 -209437487 - L1ME3A LINE L1 -9 6161 5996 860 250 59 10 chr3 8601384 8601788 -209435370 - L1ME LINE L1 -2884 3760 3337 1624 179 188 8 chr3 8602044 8602401 -209434757 + MSTC LTR MaLR 8 428 0 777 271 163 18 chr3 8602405 8602455 -209434703 + MLT1E1 LTR MaLR 89 130 -463 3087 86 32 5 chr3 8602455 8602492 -209434666 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 8602492 8602529 -209434629 + (CA)n Simple_repeat Simple_repeat 2 38 0 3087 86 32 5 chr3 8602529 8602923 -209434235 - MLT2A1 LTR ERVL -34 410 1 777 271 163 18 chr3 8602923 8603149 -209434009 + MLT1E1 LTR MaLR 130 405 -188 800 257 6 6 chr3 8603273 8603452 -209433706 + MLT1E1 LTR MaLR 476 654 0 345 280 36 44 chr3 8603470 8603720 -209433438 - L1ME LINE L1 -3744 2900 2653 2355 92 0 3 chr3 8604321 8604627 -209432531 - AluY SINE Alu -6 305 1 242 255 38 84 chr3 8604658 8604921 -209432237 - L1ME LINE L1 -4904 1638 1516 42257 36 22 1 chr3 8604971 8610989 -209426169 - L1PA2 LINE L1 -2 6153 4 385 258 76 59 chr3 8610997 8611339 -209425819 - L1ME LINE L1 -5075 1559 1271 341 324 90 37 chr3 8612207 8612451 -209424707 - HAL1 LINE L1 -1426 1081 825 414 0 0 0 chr3 8613072 8613118 -209424040 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 273 71 40 chr3 8613948 8614047 -209423111 - L2 LINE L2 -4 3309 3208 1949 123 7 3 chr3 8614363 8614686 -209422472 - AluSq SINE Alu 0 324 1 794 292 75 35 chr3 8614784 8615185 -209421973 - MLT2F LTR ERVL -10 653 237 375 285 152 19 chr3 8615199 8615462 -209421696 - MLT2F LTR ERVL -353 310 13 619 341 35 0 chr3 8615610 8615839 -209421319 + MIR SINE MIR 19 255 -7 1880 204 25 46 chr3 8616520 8617000 -209420158 - L1MA9 LINE L1 -35 6277 5808 12212 38 1 1 chr3 8617307 8619548 -209417610 + L1PA4 LINE L1 3907 6153 -2 226 386 48 24 chr3 8619589 8619884 -209417274 + L2 LINE L2 2045 2346 -968 499 295 68 91 chr3 8620173 8620655 -209416503 + L2 LINE L2 1606 2076 -1238 21 0 0 0 chr3 8621858 8621879 -209415279 + AT_rich Low_complexity Low_complexity 1 21 0 908 327 51 57 chr3 8621892 8622458 -209414700 + MLT1K LTR MaLR 10 572 -16 264 77 0 0 chr3 8623270 8623309 -209413849 + (CA)n Simple_repeat Simple_repeat 2 40 0 651 214 0 0 chr3 8623309 8623454 -209413704 + L1MA9 LINE L1 6168 6312 0 2469 69 0 0 chr3 8623718 8624021 -209413137 - AluY SINE Alu -8 303 1 213 324 14 27 chr3 8624288 8624362 -209412796 - L2 LINE L2 -9 3263 3191 4810 106 11 3 chr3 8625241 8625949 -209411209 + L1PA13 LINE L1 5448 6161 -2 230 265 119 92 chr3 8626128 8626247 -209410911 + MIR SINE MIR 48 175 -87 2279 105 3 0 chr3 8626247 8626552 -209410606 + AluY SINE Alu 1 306 -5 230 265 119 92 chr3 8626552 8626617 -209410541 + MIR SINE MIR 175 237 -25 235 289 0 0 chr3 8627219 8627295 -209409863 + L1MC/D LINE L1 5722 5797 -2011 2217 55 10 3 chr3 8627714 8628004 -209409154 - AluY SINE Alu -19 292 1 238 164 0 30 chr3 8628328 8628395 -209408763 + T-rich Low_complexity Low_complexity 4 68 0 1544 158 16 16 chr3 8631479 8631782 -209405376 - L1MA4 LINE L1 -1 6299 5997 291 93 0 0 chr3 8633226 8633269 -209403889 + (CA)n Simple_repeat Simple_repeat 2 44 0 2185 123 10 0 chr3 8633391 8633716 -209403442 - AluSc SINE Alu 0 328 1 1566 173 40 4 chr3 8633728 8634006 -209403152 - AluJb SINE Alu -24 288 1 421 319 122 55 chr3 8634367 8634606 -209402552 - L3 LINE CR1 -751 826 604 1783 207 89 20 chr3 8634606 8635113 -209402045 + MER34 LTR ERV1 1 542 0 421 319 122 55 chr3 8635113 8635261 -209401897 - L3 LINE CR1 -973 604 404 2316 60 3 33 chr3 8635261 8635563 -209401595 - AluY SINE Alu -18 293 1 421 319 122 55 chr3 8635563 8635610 -209401548 - L3 LINE CR1 -1173 404 362 219 297 90 9 chr3 8637479 8637590 -209399568 + MIR SINE MIR 58 177 -85 26 0 0 0 chr3 8638309 8638335 -209398823 + AT_rich Low_complexity Low_complexity 1 26 0 3069 98 20 2 chr3 8638810 8639248 -209397910 + LTR10B LTR ERV1 1 446 -59 1136 205 17 8 chr3 8639252 8639491 -209397667 - MLT1A1 LTR MaLR -124 241 1 5178 237 75 37 chr3 8639497 8641161 -209395997 - MLT1A1-int LTR MaLR -7 1728 2 798 170 24 5 chr3 8641163 8641463 -209395695 - MLT1A1 LTR MaLR 0 365 1 289 298 101 63 chr3 8641554 8641712 -209395446 + MIR SINE MIR 36 199 -63 372 351 93 7 chr3 8641907 8642058 -209395100 + MIR SINE MIR 82 245 -17 218 276 81 41 chr3 8644208 8644331 -209392827 - L2 LINE L2 -1 3312 3185 30 27 0 0 chr3 8644567 8644604 -209392554 + AT_rich Low_complexity Low_complexity 1 37 0 215 366 55 24 chr3 8644628 8644792 -209392366 + L3b LINE CR1 1391 1559 -24 2336 113 0 0 chr3 8646663 8646972 -209390186 + AluSx SINE Alu 1 309 -3 567 228 24 87 chr3 8647428 8647634 -209389524 - MER58C DNA MER1_type -21 194 2 320 250 0 0 chr3 8648247 8648311 -209388847 + MER45 DNA AcHobo 1518 1581 0 657 247 7 0 chr3 8648325 8648475 -209388683 - MER45A DNA AcHobo -6 172 22 27 29 0 0 chr3 8649488 8649522 -209387636 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr3 8650380 8650431 -209386727 + AT_rich Low_complexity Low_complexity 1 51 0 2164 117 23 10 chr3 8650436 8650744 -209386414 + AluSq SINE Alu 1 312 -1 303 322 67 13 chr3 8651356 8651505 -209385653 - L2 LINE L2 -213 3059 2903 1312 177 12 4 chr3 8651577 8651831 -209385327 - MER83 LTR ERV1 0 448 193 228 35 0 0 chr3 8652067 8652096 -209385062 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 299 326 112 66 chr3 8653119 8653361 -209383797 - L2 LINE L2 -16 3256 3004 713 225 0 80 chr3 8654322 8654509 -209382649 + FAM SINE Alu 2 173 -2 279 0 0 0 chr3 8654902 8654933 -209382225 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7194 77 19 0 chr3 8654944 8656701 -209380457 - L1PA7 LINE L1 -11 6143 4369 28223 108 9 70 chr3 8656701 8661994 -209375164 - L1P LINE L1 -1164 4982 12 1676 197 3 3 chr3 8662331 8662630 -209374528 - AluJb SINE Alu -13 299 1 309 319 174 7 chr3 8662691 8662829 -209374329 - MER5A DNA MER1_type -3 186 26 270 287 101 23 chr3 8663504 8663633 -209373525 - MIR SINE MIR 0 262 124 * 327 347 143 40 chr3 8663613 8664107 -209373051 + L2 LINE L2 2672 3227 -86 2172 114 7 0 chr3 8664674 8664964 -209372194 + AluSc SINE Alu 1 292 -17 288 318 143 14 chr3 8666118 8666390 -209370768 - MLT1L LTR MaLR 0 615 229 782 183 7 0 chr3 8666479 8666616 -209370542 + AluJo SINE Alu 1 138 -174 7792 18 0 0 chr3 8666667 8668030 -209369128 - L1PA2 LINE L1 0 6155 4792 3438 19 0 0 chr3 8668030 8668452 -209368706 + L1PA2 LINE L1 4369 4790 -1356 345 294 228 28 chr3 8668456 8668636 -209368522 - MIR SINE MIR -46 216 1 471 268 78 57 chr3 8669005 8669233 -209367925 - L1MC4 LINE L1 -567 7475 7234 2058 189 119 104 chr3 8669233 8670047 -209367111 + LTR1B LTR ERV1 1 826 0 471 268 78 57 chr3 8670047 8670188 -209366970 - L1MC4 LINE L1 -808 7234 7098 204 113 0 94 chr3 8670305 8670358 -209366800 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 574 306 131 33 chr3 8670457 8670947 -209366211 + L1MC4 LINE L1 7498 8035 -7 666 268 6 11 chr3 8671280 8671459 -209365699 - MER58A DNA MER1_type -22 202 25 228 393 13 20 chr3 8671518 8671668 -209365490 + L2 LINE L2 2907 3055 -217 208 205 205 26 chr3 8671856 8671934 -209365224 + L2 LINE L2 3218 3309 -4 2294 135 0 0 chr3 8672191 8672502 -209364656 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr3 8672931 8672960 -209364198 + AT_rich Low_complexity Low_complexity 1 29 0 4174 123 24 5 chr3 8673121 8673753 -209363405 + LTR9B LTR ERV1 1 644 0 30 27 0 0 chr3 8673840 8673877 -209363281 + AT_rich Low_complexity Low_complexity 1 37 0 1768 181 12 71 chr3 8675863 8676272 -209360886 - MLT1B LTR MaLR 0 390 6 414 194 0 0 chr3 8676690 8676757 -209360401 + Tigger2 DNA MER2_type 1 67 -2651 * 2585 169 11 5 chr3 8676743 8677192 -209359966 + Tigger2 DNA MER2_type 2267 2718 0 6540 147 37 36 chr3 8677850 8678447 -209358711 + Tigger3b DNA MER2_type 1 596 -2432 2232 109 0 7 chr3 8678447 8678749 -209358409 + AluSc SINE Alu 1 300 -9 6540 147 37 36 chr3 8678749 8679381 -209357777 + Tigger3b DNA MER2_type 596 1231 0 224 29 0 29 chr3 8679894 8679928 -209357230 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1299 232 30 55 chr3 8680144 8680185 -209356973 - MLT2C2 LTR ERVL -3 461 420 315 71 0 0 chr3 8680185 8680227 -209356931 + (TG)n Simple_repeat Simple_repeat 2 43 0 1299 232 30 55 chr3 8680227 8680654 -209356504 - MLT2C2 LTR ERVL -44 420 5 2527 99 17 11 chr3 8680974 8681336 -209355822 - THE1B LTR MaLR 0 364 1 2094 122 0 16 chr3 8683930 8684242 -209352916 + AluSx SINE Alu 1 307 -5 396 103 0 0 chr3 8684242 8684300 -209352858 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2344 64 3 0 chr3 8684930 8685226 -209351932 + AluY SINE Alu 1 297 -14 2085 96 24 3 chr3 8686992 8687284 -209349874 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr3 8688921 8688951 -209348207 + AT_rich Low_complexity Low_complexity 1 30 0 713 293 28 23 chr3 8689282 8689497 -209347661 - MIR SINE MIR -46 216 1 2346 61 14 0 chr3 8690595 8690892 -209346266 - AluY SINE Alu -10 301 1 508 279 14 7 chr3 8690994 8691134 -209346024 - MLT1G1 LTR MaLR -440 155 15 471 344 26 31 chr3 8691179 8691374 -209345784 - MIR SINE MIR -41 221 28 406 312 70 58 chr3 8691413 8691859 -209345299 + HAL1b LINE L1 224 674 -674 27 0 0 0 chr3 8692175 8692202 -209344956 + AT_rich Low_complexity Low_complexity 1 27 0 356 285 98 87 chr3 8692327 8692487 -209344671 - L1M4 LINE L1 -1037 5109 4952 333 0 0 0 chr3 8692487 8692524 -209344634 + (TG)n Simple_repeat Simple_repeat 2 38 0 356 285 98 87 chr3 8692524 8693057 -209344101 - L1M4 LINE L1 -1194 4952 4408 2045 124 3 0 chr3 8693139 8693421 -209343737 - AluSp SINE Alu -30 283 1 21 36 0 0 chr3 8693599 8693627 -209343531 + AT_rich Low_complexity Low_complexity 1 28 0 1037 288 44 75 chr3 8694222 8694812 -209342346 + L1MC2 LINE L1 13 584 -5461 1788 161 3 17 chr3 8695417 8695716 -209341442 - AluJo SINE Alu -17 295 1 290 194 16 0 chr3 8695732 8695794 -209341364 + L1MC2 LINE L1 762 824 -5742 4416 228 90 52 chr3 8695822 8696168 -209340990 + L1M3e LINE L1 781 1112 -5451 2023 161 0 0 chr3 8696168 8696478 -209340680 + AluSx SINE Alu 1 310 -2 4416 228 90 52 chr3 8696478 8697763 -209339395 + L1M3e LINE L1 1112 2449 -4114 2599 188 27 21 chr3 8697763 8698236 -209338922 + MLT2B2 LTR ERVL 1 479 -36 261 98 0 0 chr3 8698236 8698277 -209338881 + (TG)n Simple_repeat Simple_repeat 2 42 0 2599 188 27 21 chr3 8698277 8698315 -209338843 + MLT2B2 LTR ERVL 479 515 0 4416 228 90 52 chr3 8698315 8698567 -209338591 + L1M3e LINE L1 2449 2690 -3873 1264 226 15 11 chr3 8698603 8698869 -209338289 + Tigger7 DNA MER2_type 1 267 -466 307 225 14 14 chr3 8698867 8698938 -209338220 + Tigger7 DNA MER2_type 2389 2459 -28 * 312 222 14 14 chr3 8698959 8699031 -209338127 + Tigger7 DNA MER2_type 2389 2460 -27 335 197 0 28 chr3 8699052 8699123 -209338035 + Tigger7 DNA MER2_type 2396 2464 -27 284 236 14 14 chr3 8699143 8699215 -209337943 + Tigger7 DNA MER2_type 2389 2460 -27 473 223 0 21 chr3 8699236 8699330 -209337828 + Tigger7 DNA MER2_type 2392 2483 -4 6980 233 71 54 chr3 8699332 8700238 -209336920 + L1MC2 LINE L1 2866 3756 -3006 294 29 0 0 chr3 8700238 8700273 -209336885 + (TC)n Simple_repeat Simple_repeat 2 36 0 6980 233 71 54 chr3 8700273 8701255 -209335903 + L1MC2 LINE L1 3756 4720 -2042 1255 169 4 8 chr3 8701255 8701503 -209335655 + L1MA4 LINE L1 6053 6299 -1 6980 233 71 54 chr3 8701503 8703442 -209333716 + L1MC2 LINE L1 4720 6754 -8 5451 249 73 60 chr3 8703806 8705342 -209331816 - L1M4 LINE L1 -1145 5001 3409 2107 102 0 0 chr3 8705342 8705652 -209331506 - AluSq SINE Alu 0 310 1 5451 249 73 60 chr3 8705652 8706959 -209330199 - L1M4 LINE L1 -2737 3409 2120 3720 177 31 20 chr3 8706961 8707897 -209329261 + L1PA16 LINE L1 4964 5914 -252 889 148 13 19 chr3 8707911 8708066 -209329092 + L1PA16 LINE L1 6001 6154 -12 600 249 105 30 chr3 8708077 8708390 -209328768 + L1ME LINE L1 5191 5521 -645 * 29833 56 10 3 chr3 8708359 8712956 -209324202 + L1PA5 LINE L1 1524 6153 -1 5862 196 42 37 chr3 8713715 8716073 -209321085 - L1MA7 LINE L1 -10 7700 5325 3921 240 57 26 chr3 8716056 8717172 -209319986 - L1MA7 LINE L1 -2689 4876 3687 * 2484 135 3 3 chr3 8717172 8717535 -209319623 - THE1B LTR MaLR -1 363 1 3921 240 57 26 chr3 8717535 8717935 -209319223 - L1MA7 LINE L1 -3878 3687 3301 1975 254 41 25 chr3 8718132 8718688 -209318470 - L1MA7 LINE L1 -5715 1781 1217 335 241 116 9 chr3 8719420 8719532 -209317626 + MLT1J2 LTR MaLR 324 447 -3 499 331 66 54 chr3 8719549 8720047 -209317111 - L2 LINE L2 -6 3307 2804 1579 163 0 7 chr3 8720116 8720386 -209316772 + AluJb SINE Alu 1 268 -44 204 143 0 0 chr3 8720390 8720432 -209316726 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 607 184 11 34 chr3 8720440 8720619 -209316539 + GA-rich Low_complexity Low_complexity 2 176 0 695 361 92 24 chr3 8720787 8721333 -209315825 - L2 LINE L2 -650 2664 2082 251 248 29 88 chr3 8723804 8723941 -209313217 - L1MC4 LINE L1 0 8042 7914 1010 278 59 62 chr3 8724047 8724687 -209312471 - L1MC4 LINE L1 -203 7839 7202 1544 214 31 0 chr3 8724743 8725103 -209312055 - L1MD1 LINE L1 -8 6628 6258 2815 230 15 20 chr3 8725104 8725934 -209311224 - L1MD1 LINE L1 -428 6208 5376 1377 189 20 20 chr3 8725934 8726235 -209310923 - L1MB2 LINE L1 -8 6163 5863 2815 230 15 20 chr3 8726235 8726286 -209310872 - L1MD1 LINE L1 -1260 5376 5326 189 74 0 0 chr3 8726286 8726313 -209310845 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2815 230 15 20 chr3 8726313 8726436 -209310722 - L1MD1 LINE L1 -1310 5326 5213 985 269 85 13 chr3 8726433 8727104 -209310054 - L1MD1 LINE L1 -2405 4135 3397 * 398 170 7 54 chr3 8727117 8727209 -209309949 - L1MD1 LINE L1 -3962 2578 2494 2338 88 0 3 chr3 8727209 8727515 -209309643 - AluSx SINE Alu -7 305 1 398 170 7 54 chr3 8727515 8727569 -209309589 - L1MD1 LINE L1 -4046 2494 2439 1612 229 72 105 chr3 8727619 8728199 -209308959 + MER77 LTR ERV1 41 601 -4 3268 235 170 50 chr3 8728229 8728356 -209308802 - L1MD1 LINE L1 -5137 1403 1293 1763 156 0 11 chr3 8728356 8728638 -209308520 - AluSg SINE Alu -31 279 1 3268 235 170 50 chr3 8728638 8729749 -209307409 - L1MD1 LINE L1 -5247 1293 16 303 326 11 0 chr3 8729934 8730023 -209307135 + L2 LINE L2 3199 3288 -25 316 298 109 32 chr3 8731679 8731927 -209305231 + L1ME4a LINE L1 5842 6108 -13 485 190 84 42 chr3 8732701 8732843 -209304315 + MIR SINE MIR 102 249 -13 199 263 0 0 chr3 8732891 8732929 -209304229 + L2 LINE L2 3251 3288 -25 374 139 14 0 chr3 8732938 8733010 -209304148 + (ATG)n Simple_repeat Simple_repeat 1 73 0 297 368 8 45 chr3 8733058 8733191 -209303967 + MER91A DNA MER1_type 47 174 -22 3664 125 49 16 chr3 8733523 8734155 -209303003 + MER39B LTR ERV1 1 653 0 2333 103 0 0 chr3 8734234 8734535 -209302623 - AluSc SINE Alu -8 301 1 262 304 44 44 chr3 8736018 8736153 -209301005 + MER5C DNA MER1_type 1 135 -189 224 232 0 18 chr3 8736474 8736530 -209300628 - MIR SINE MIR -25 237 183 218 308 56 19 chr3 8736806 8736913 -209300245 + MIR SINE MIR 46 156 -106 274 263 0 13 chr3 8737342 8737418 -209299740 + MIR SINE MIR 172 246 -16 189 360 101 36 chr3 8737591 8737730 -209299428 + MIR3 SINE MIR 16 163 -45 1080 148 32 0 chr3 8737971 8738160 -209298998 - Tigger4(Zombi) DNA MER2_type 0 2731 2537 1562 214 62 10 chr3 8738165 8738469 -209298689 - Tigger4(Zombi) DNA MER2_type -2410 321 2 819 189 60 78 chr3 8739713 8739930 -209297228 + MER20 DNA MER1_type 7 219 0 2319 184 19 17 chr3 8740154 8740622 -209296536 - MER39 LTR ERV1 -6 701 233 253 122 22 89 chr3 8740721 8740811 -209296347 + (ATATG)n Simple_repeat Simple_repeat 2 85 0 799 276 94 74 chr3 8741024 8741564 -209295594 + LTR1B LTR ERV1 39 589 -237 1889 206 43 5 chr3 8742405 8742803 -209294355 + MER34C LTR ERV1 172 584 -1 505 240 25 8 chr3 8742804 8742925 -209294233 + MIR SINE MIR 116 238 -24 214 343 0 0 chr3 8742933 8743003 -209294155 + MIR SINE MIR 193 262 0 1368 134 44 19 chr3 8743664 8744099 -209293059 + LTR54 LTR ERV1 2 508 -2 25 0 0 0 chr3 8744679 8744704 -209292454 + AT_rich Low_complexity Low_complexity 1 25 0 398 322 94 55 chr3 8744940 8744976 -209292182 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 8744976 8745001 -209292157 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 8745001 8745433 -209291725 - L2 LINE L2 -498 2816 2363 502 375 11 23 chr3 8745463 8745610 -209291548 - L3 LINE CR1 -473 1104 960 853 228 105 40 chr3 8745610 8746010 -209291148 + LTR37A LTR ERV1 1 426 0 502 375 11 23 chr3 8746010 8746126 -209291032 - L3 LINE CR1 -617 960 844 844 114 16 0 chr3 8746238 8746361 -209290797 + AluSp/q SINE Alu 177 301 -12 300 283 40 0 chr3 8746911 8747005 -209290153 - MER34 LTR ERV1 0 542 445 339 217 0 0 chr3 8747005 8747065 -209290093 - Tigger5 DNA MER2_type 0 2323 2264 236 213 0 98 chr3 8747086 8747147 -209290011 - Tigger5 DNA MER2_type -2268 55 1 267 146 107 117 chr3 8747147 8747234 -209289924 - LTR49 LTR ERV1 -90 505 420 2223 187 69 16 chr3 8747234 8747828 -209289330 + MER39 LTR ERV1 1 707 0 540 249 57 40 chr3 8747828 8748194 -209288964 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 8748338 8748359 -209288799 + AT_rich Low_complexity Low_complexity 1 21 0 1736 180 7 7 chr3 8748868 8749174 -209287984 + AluJo SINE Alu 1 306 -6 200 85 21 43 chr3 8750595 8750642 -209286516 + (TAA)n Simple_repeat Simple_repeat 2 47 0 630 179 15 45 chr3 8750974 8751108 -209286050 - FLAM_A SINE Alu -3 130 1 1765 232 73 13 chr3 8751292 8751887 -209285271 + MER39 LTR ERV1 1 707 0 24 53 0 0 chr3 8752153 8752191 -209284967 + AT_rich Low_complexity Low_complexity 1 38 0 2269 109 0 3 chr3 8753159 8753471 -209283687 - AluSx SINE Alu -1 311 1 622 225 55 69 chr3 8754131 8754349 -209282809 + MER58C DNA MER1_type 1 215 0 233 250 89 0 chr3 8754712 8754768 -209282390 - L2 LINE L2 -73 3240 3180 1020 206 5 0 chr3 8755357 8755561 -209281597 - MER3 DNA MER1_type -4 205 1 264 250 135 0 chr3 8755815 8755911 -209281247 - L1ME3A LINE L1 -22 6148 6040 2385 75 0 0 chr3 8757180 8757473 -209279685 + AluY SINE Alu 1 293 -18 234 0 0 0 chr3 8757792 8757818 -209279340 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 237 33 0 0 chr3 8757817 8757847 -209279311 + (GA)n Simple_repeat Simple_repeat 1 30 0 309 322 66 16 chr3 8757848 8757969 -209279189 + L2 LINE L2 3187 3313 0 3004 197 22 35 chr3 8758547 8759468 -209277690 + L1MA6 LINE L1 4654 5585 -715 2093 67 0 4 chr3 8759468 8759737 -209277421 - AluY SINE Alu -7 304 37 3004 197 22 35 chr3 8759737 8760012 -209277146 + L1MA6 LINE L1 5585 5862 -438 216 0 0 0 chr3 8760012 8760036 -209277122 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 300 27 0 0 chr3 8760035 8760072 -209277086 + (CA)n Simple_repeat Simple_repeat 1 37 0 3004 197 22 35 chr3 8760036 8760577 -209276581 + L1MA6 LINE L1 5862 6300 0 453 299 199 19 chr3 8761602 8761813 -209275345 + MIR SINE MIR 13 261 -1 222 325 136 26 chr3 8762180 8762334 -209274824 + MIR3 SINE MIR 29 199 -9 1120 245 66 23 chr3 8762785 8763132 -209274026 - MLT1A1 LTR MaLR -3 362 1 2259 110 7 0 chr3 8763598 8763907 -209273251 + AluSq SINE Alu 1 311 -2 1376 162 78 60 chr3 8763918 8764251 -209272907 - MER44D DNA MER2_type 0 609 1 1504 196 25 71 chr3 8764631 8765023 -209272135 + MLT1A2 LTR MaLR 1 374 0 1057 203 5 5 chr3 8765413 8765610 -209271548 + AluJo SINE Alu 104 300 -12 451 292 37 33 chr3 8765648 8766075 -209271083 + L1ME LINE L1 5204 5636 -534 1509 167 0 116 chr3 8766442 8766795 -209270363 + AluJo SINE Alu 1 312 0 474 242 75 17 chr3 8768007 8768127 -209269031 - L2 LINE L2 0 3313 3187 236 324 56 19 chr3 8768721 8768829 -209268329 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 8768894 8768933 -209268225 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 8769525 8769553 -209267605 + AT_rich Low_complexity Low_complexity 1 28 0 2296 104 0 0 chr3 8770353 8770651 -209266507 - AluSx SINE Alu -14 298 1 606 256 102 76 chr3 8770658 8771079 -209266079 - L1ME2 LINE L1 -1 6163 5732 388 242 40 32 chr3 8772200 8772324 -209264834 + MIR SINE MIR 94 218 -44 371 356 94 32 chr3 8772824 8773377 -209263781 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 8773885 8774283 -209262875 - MSTA LTR MaLR 0 428 1 9133 154 6 35 chr3 8774283 8775908 -209261250 - MSTA-int LTR MaLR 0 1580 3 2181 131 79 22 chr3 8775910 8776315 -209260843 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 8776999 8777042 -209260116 + (GA)n Simple_repeat Simple_repeat 2 44 0 273 314 12 12 chr3 8777099 8777185 -209259973 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 8777633 8777740 -209259418 + MIR SINE MIR 30 138 -70 193 267 133 13 chr3 8778557 8778632 -209258526 - MIR SINE MIR -11 251 168 433 224 97 30 chr3 8779053 8779290 -209257868 + HAL1b LINE L1 909 1161 -187 352 341 65 14 chr3 8780069 8780286 -209256872 - MIR SINE MIR -15 247 20 1706 219 88 17 chr3 8780338 8780725 -209256433 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 8780725 8780761 -209256397 + (CA)n Simple_repeat Simple_repeat 2 37 0 1706 219 88 17 chr3 8780761 8780794 -209256364 + MLT2C2 LTR ERVL 432 461 -3 2224 115 51 28 chr3 8781130 8781486 -209255672 - THE1B LTR MaLR 0 364 1 11219 108 4 4 chr3 8781487 8783065 -209254093 - THE1B-int LTR MaLR -1 1579 1 2200 130 0 0 chr3 8783097 8783404 -209253754 - AluSc SINE Alu -2 307 1 2048 135 51 31 chr3 8783404 8783760 -209253398 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 8783890 8783974 -209253184 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 8783974 8784479 -209252679 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 8784479 8784768 -209252390 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 8785389 8785578 -209251580 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 8786314 8786366 -209250792 + GA-rich Low_complexity Low_complexity 1 52 0 2300 158 57 0 chr3 8786577 8786982 -209250176 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 8786982 8788520 -209248638 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 8788544 8788956 -209248202 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 8789625 8789849 -209247309 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 8789939 8790010 -209247148 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 8790417 8790557 -209246601 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 8790588 8790776 -209246382 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 8790917 8791514 -209245644 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 8792442 8792717 -209244441 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 8793086 8793221 -209243937 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 8793221 8794495 -209242663 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 8794495 8794531 -209242627 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 8794561 8794704 -209242454 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 8795038 8795326 -209241832 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 8795333 8795498 -209241660 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 8796589 8796749 -209240409 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 8797991 8798343 -209238815 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 8799449 8799475 -209237683 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 8799567 8799991 -209237167 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 8800141 8800277 -209236881 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 8800989 8801299 -209235859 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 8801382 8801544 -209235614 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 8803034 8803155 -209234003 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 8803324 8803393 -209233765 + GA-rich Low_complexity Low_complexity 3 70 0 7385 32 2 2 chr3 8803687 8804877 -209232281 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 8805044 8805129 -209232029 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 8805439 8805720 -209231438 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 8806173 8806207 -209230951 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 8806222 8806265 -209230893 + (TA)n Simple_repeat Simple_repeat 2 44 0 214 244 0 0 chr3 8806387 8806428 -209230730 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 8806486 8806536 -209230622 + (TA)n Simple_repeat Simple_repeat 1 51 0 1522 174 144 17 chr3 8806817 8807178 -209229980 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 8807491 8807555 -209229603 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 8808064 8808099 -209229059 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 8808099 8808139 -209229019 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 8808139 8808491 -209228667 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 8808491 8809015 -209228143 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 8809002 8809230 -209227928 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 8809261 8809451 -209227707 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 8809455 8810312 -209226846 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 8810357 8810641 -209226517 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 8810653 8812280 -209224878 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 8812715 8813025 -209224133 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 8813795 8813889 -209223269 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 8813900 8814280 -209222878 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 8814515 8814764 -209222394 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 8815167 8815195 -209221963 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 279 0 0 0 chr3 8815256 8815287 -209221871 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1157 101 6 24 chr3 8815293 8815462 -209221696 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 8816967 8816995 -209220163 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 8817991 8818086 -209219072 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 8818570 8818597 -209218561 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 8819476 8819780 -209217378 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 8819778 8819859 -209217299 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8819857 8819938 -209217220 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8819936 8820017 -209217141 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8820015 8820096 -209217062 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8820094 8820175 -209216983 + L1PA15 LINE L1 1489 1570 -5217 * 15262 210 21 16 chr3 8820173 8824659 -209212499 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 8824659 8824953 -209212205 + AluSg SINE Alu 2 296 -14 15262 210 21 16 chr3 8824953 8825760 -209211398 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 8825784 8825830 -209211328 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 8826755 8827000 -209210158 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 8828026 8828096 -209209062 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 8828327 8829000 -209208158 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 8828993 8829385 -209207773 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 8829386 8829470 -209207688 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 8829732 8829951 -209207207 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 8830206 8830227 -209206931 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 8830906 8831042 -209206116 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 8831881 8832110 -209205048 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 8832282 8832470 -209204688 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 8832476 8832644 -209204514 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 8832606 8832779 -209204379 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 8832968 8833097 -209204061 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 8833127 8833301 -209203857 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 8833386 8833450 -209203708 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 8834395 8834423 -209202735 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 8834423 8834465 -209202693 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 8835362 8835587 -209201571 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 8835736 8835757 -209201401 + (TA)n Simple_repeat Simple_repeat 1 21 0 1761 184 7 3 chr3 8835757 8836051 -209201107 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 8836841 8837020 -209200138 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 8837419 8837446 -209199712 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 8837446 8837797 -209199361 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 8837797 8837937 -209199221 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 8838002 8838033 -209199125 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 8838104 8838285 -209198873 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 8838360 8838417 -209198741 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 8838424 8838993 -209198165 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 8838993 8839476 -209197682 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 8839476 8840574 -209196584 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 8840623 8840727 -209196431 - MER5B DNA MER1_type -71 107 7 2506 50 7 0 chr3 8840967 8841270 -209195888 + AluY SINE Alu 2 306 -5 309 179 0 0 chr3 8842245 8842291 -209194867 + (TG)n Simple_repeat Simple_repeat 2 50 -18 1974 169 31 6 chr3 8842291 8842646 -209194512 - THE1B LTR MaLR 0 364 1 309 179 0 0 chr3 8842646 8842666 -209194492 + (TG)n Simple_repeat Simple_repeat 49 68 0 247 281 0 0 chr3 8842730 8842787 -209194371 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 8844164 8844385 -209192773 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 8844816 8844851 -209192307 + AT_rich Low_complexity Low_complexity 1 35 0 2074 150 14 6 chr3 8847376 8847735 -209189423 - L1MA5 LINE L1 -478 5822 5461 2314 171 18 13 chr3 8847739 8848195 -209188963 + L1MA5 LINE L1 5843 6300 0 1004 322 29 17 chr3 8848381 8848883 -209188275 + MLT1H LTR MaLR 1 549 0 3841 175 4 4 chr3 8849288 8849990 -209187168 + L1MB1 LINE L1 5479 6180 -9 869 179 104 112 chr3 8850053 8850216 -209186942 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 8850216 8850598 -209186560 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 8850598 8850781 -209186377 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 8850811 8850885 -209186273 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 8851254 8851319 -209185839 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 8853294 8853491 -209183667 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 8853547 8853827 -209183331 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 8853827 8853854 -209183304 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2331 106 0 0 chr3 8855188 8855500 -209181658 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 8856136 8856436 -209180722 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 8856489 8856587 -209180571 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 8857530 8857640 -209179518 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 8857640 8857723 -209179435 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 8857747 8858140 -209179018 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 8858337 8858626 -209178532 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 8859587 8859836 -209177322 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 8860207 8860228 -209176930 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 8860377 8860440 -209176718 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 8861375 8861405 -209175753 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 8862153 8862284 -209174874 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 8863437 8863542 -209173616 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 8864868 8865142 -209172016 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 8865142 8865439 -209171719 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 8865439 8865481 -209171677 + L1ME4a LINE L1 5908 5949 -172 3144 167 86 28 chr3 8865481 8866168 -209170990 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 8866168 8866272 -209170886 + L1ME4a LINE L1 5949 6052 -69 429 353 108 4 chr3 8866876 8867154 -209170004 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 8867248 8868021 -209169137 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 8868392 8868470 -209168688 + AT_rich Low_complexity Low_complexity 1 78 0 415 175 0 19 chr3 8868659 8868762 -209168396 + CT-rich Low_complexity Low_complexity 2 102 0 2448 63 0 0 chr3 8869274 8869576 -209167582 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 8869971 8870271 -209166887 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 8871637 8871708 -209165450 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 8871866 8871896 -209165262 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 8872190 8872321 -209164837 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 8872235 8872341 -209164817 + MER5A DNA MER1_type 68 186 -3 * 361 302 35 35 chr3 8872371 8872487 -209164671 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 8872495 8872579 -209164579 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 8872699 8872751 -209164407 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 8874218 8874572 -209162586 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 8874703 8874738 -209162420 + AT_rich Low_complexity Low_complexity 1 35 0 5530 166 26 24 chr3 8875048 8875939 -209161219 + L1MA6 LINE L1 4422 5310 -990 1952 131 40 0 chr3 8875939 8876237 -209160921 + AluSx SINE Alu 1 310 -2 5530 166 26 24 chr3 8876237 8877020 -209160138 + L1MA6 LINE L1 5310 6090 -210 2156 103 7 3 chr3 8877020 8877311 -209159847 + AluSx SINE Alu 1 292 -20 231 114 0 0 chr3 8877311 8877346 -209159812 + (TA)n Simple_repeat Simple_repeat 1 35 0 5530 166 26 24 chr3 8877346 8877525 -209159633 + L1MA6 LINE L1 6089 6294 -6 771 314 89 14 chr3 8877540 8878024 -209159134 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 8878509 8878987 -209158171 + L1MC/D LINE L1 4168 4659 -1487 316 290 41 14 chr3 8879094 8879239 -209157919 + L1MC/D LINE L1 4804 4952 -1194 301 244 67 110 chr3 8879453 8879662 -209157496 + L1MC/D LINE L1 5259 5458 -2350 286 331 43 38 chr3 8879746 8879930 -209157228 + L1MC/D LINE L1 5574 5758 -2050 276 277 15 42 chr3 8880273 8880512 -209156646 + CT-rich Low_complexity Low_complexity 1 232 0 220 149 19 56 chr3 8880513 8880620 -209156538 + T-rich Low_complexity Low_complexity 5 107 0 6475 35 2 1 chr3 8880712 8882106 -209155052 - L1PA2 LINE L1 -156 5999 4605 358 265 29 37 chr3 8883223 8883359 -209153799 + MLT1K LTR MaLR 446 580 -8 475 244 1 22 chr3 8884477 8884587 -209152571 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 8884587 8884670 -209152488 + (TA)n Simple_repeat Simple_repeat 2 82 0 1746 224 38 33 chr3 8884694 8885087 -209152071 + MLT1E LTR MaLR 199 593 0 2022 130 0 0 chr3 8885284 8885589 -209151569 - AluSx SINE Alu 0 305 1 584 233 95 98 chr3 8885596 8886017 -209151141 - L1ME1 LINE L1 -1 6163 5729 388 242 40 32 chr3 8887138 8887262 -209149896 + MIR SINE MIR 94 218 -44 339 356 96 36 chr3 8887762 8888316 -209148842 + L2 LINE L2 1818 2404 -910 1737 173 93 18 chr3 8888824 8889222 -209147936 - MSTA LTR MaLR 0 428 1 9057 156 6 35 chr3 8889222 8890848 -209146310 - MSTA-int LTR MaLR 0 1580 3 381 269 11 0 chr3 8890850 8890943 -209146215 - MSTA LTR MaLR 0 428 335 21 36 0 0 chr3 8891203 8891231 -209145927 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 8891826 8892414 -209144744 + L1MCb LINE L1 13 582 -5463 1737 186 0 7 chr3 8893021 8893316 -209143842 - AluJo SINE Alu -17 295 3 353 295 38 0 chr3 8894469 8894574 -209142584 - MIR SINE MIR -104 158 50 315 274 49 74 chr3 8895900 8896182 -209140976 + L1ME4a LINE L1 5634 5922 -199 1902 156 10 0 chr3 8896182 8896471 -209140687 + AluJb SINE Alu 9 300 -12 315 274 49 74 chr3 8896471 8896513 -209140645 + L1ME4a LINE L1 5922 5964 -157 3060 169 87 29 chr3 8896513 8897200 -209139958 - LTR8A LTR ERV1 0 727 1 315 274 49 74 chr3 8897200 8897304 -209139854 + L1ME4a LINE L1 5964 6052 -69 419 242 74 0 chr3 8898629 8898724 -209138434 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 8899208 8899235 -209137923 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 8900114 8900418 -209136740 + L1PA4 LINE L1 1280 1570 -5217 293 259 12 0 chr3 8900416 8900497 -209136661 + L1PA4 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8900495 8900576 -209136582 + L1PA4 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 8900574 8900655 -209136503 + L1PA4 LINE L1 1489 1570 -5217 269 272 12 0 chr3 8900653 8900734 -209136424 + L1PA4 LINE L1 1489 1570 -5217 * 17935 181 11 12 chr3 8900732 8905886 -209131272 + L1PA4 LINE L1 1489 6655 -151 1368 134 44 19 chr3 8906391 8906826 -209130332 + LTR54 LTR ERV1 2 508 -2 25 0 0 0 chr3 8907406 8907431 -209129727 + AT_rich Low_complexity Low_complexity 1 25 0 398 322 94 55 chr3 8907668 8907704 -209129454 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 8907704 8907729 -209129429 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 8907729 8908161 -209128997 - L2 LINE L2 -498 2816 2363 496 374 11 26 chr3 8908191 8908339 -209128819 - L3 LINE CR1 -473 1104 960 845 228 105 40 chr3 8908339 8908738 -209128420 + LTR37A LTR ERV1 2 426 0 496 374 11 26 chr3 8908738 8908854 -209128304 - L3 LINE CR1 -617 960 844 844 114 16 0 chr3 8908966 8909089 -209128069 + AluSp/q SINE Alu 177 301 -12 300 283 40 0 chr3 8909639 8909733 -209127425 - MER34 LTR ERV1 0 542 445 339 217 0 0 chr3 8909733 8909793 -209127365 - Tigger5 DNA MER2_type 0 2323 2264 236 213 0 98 chr3 8909814 8909875 -209127283 - Tigger5 DNA MER2_type -2268 55 1 267 146 107 117 chr3 8909875 8909962 -209127196 - LTR49 LTR ERV1 -90 505 420 2169 192 69 16 chr3 8909962 8910556 -209126602 + MER39 LTR ERV1 1 707 0 540 249 57 40 chr3 8910556 8910922 -209126236 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 8911066 8911087 -209126071 + AT_rich Low_complexity Low_complexity 1 21 0 764 167 8 8 chr3 8911597 8911729 -209125429 + FLAM_C SINE Alu 2 133 0 207 100 0 0 chr3 8912477 8912507 -209124651 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 232 286 0 0 chr3 8913442 8913505 -209123653 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr3 8913654 8913675 -209123483 + AT_rich Low_complexity Low_complexity 1 21 0 566 261 48 52 chr3 8914046 8914295 -209122863 - LTR16A1 LTR ERVL -1 456 209 240 324 56 19 chr3 8965814 8965922 -209071236 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 8965987 8966026 -209071132 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 8966618 8966646 -209070512 + AT_rich Low_complexity Low_complexity 1 28 0 2309 104 0 0 chr3 8967446 8967744 -209069414 - AluSx SINE Alu -14 298 1 513 261 97 71 chr3 8967751 8968172 -209068986 - L1ME2 LINE L1 -1 6163 5732 381 242 40 32 chr3 8969293 8969417 -209067741 + MIR SINE MIR 94 218 -44 364 356 94 32 chr3 8969917 8970470 -209066688 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 8970978 8971376 -209065782 - MSTA LTR MaLR 0 428 1 9145 154 6 35 chr3 8971376 8973001 -209064157 - MSTA-int LTR MaLR 0 1580 3 2193 131 79 22 chr3 8973003 8973408 -209063750 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 8974092 8974135 -209063023 + (GA)n Simple_repeat Simple_repeat 2 44 0 270 314 12 12 chr3 8974192 8974278 -209062880 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 8974726 8974833 -209062325 + MIR SINE MIR 30 138 -70 188 267 133 13 chr3 8975650 8975725 -209061433 - MIR SINE MIR -11 251 168 374 224 97 30 chr3 8976146 8976383 -209060775 + HAL1b LINE L1 909 1161 -187 346 341 65 14 chr3 8977162 8977379 -209059779 - MIR SINE MIR -15 247 20 1570 219 88 17 chr3 8977431 8977818 -209059340 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 8977818 8977854 -209059304 + (CA)n Simple_repeat Simple_repeat 2 37 0 1570 219 88 17 chr3 8977854 8977887 -209059271 + MLT2C2 LTR ERVL 432 461 -3 2231 115 51 28 chr3 8978223 8978579 -209058579 - THE1B LTR MaLR 0 364 1 10361 106 4 4 chr3 8978580 8980158 -209057000 - THE1B-int LTR MaLR -1 1579 1 2195 133 0 0 chr3 8980187 8980496 -209056662 - AluSc SINE Alu 0 309 1 2048 135 51 31 chr3 8980496 8980852 -209056306 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 8980982 8981066 -209056092 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 8981066 8981571 -209055587 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 8981571 8981860 -209055298 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 8982481 8982670 -209054488 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 8983406 8983458 -209053700 + GA-rich Low_complexity Low_complexity 1 52 0 2276 161 57 0 chr3 8983669 8984074 -209053084 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 8984074 8985612 -209051546 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 8985636 8986048 -209051110 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 8986717 8986941 -209050217 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 8987031 8987102 -209050056 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 8987509 8987649 -209049509 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 8987680 8987868 -209049290 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 8988009 8988606 -209048552 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 8989534 8989809 -209047349 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 8990178 8990313 -209046845 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 8990313 8991587 -209045571 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 8991587 8991623 -209045535 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 8991653 8991796 -209045362 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 8992130 8992418 -209044740 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 8992425 8992590 -209044568 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 8993681 8993841 -209043317 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 8995083 8995435 -209041723 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 8996541 8996567 -209040591 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 8996659 8997083 -209040075 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 8997233 8997369 -209039789 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 8998081 8998391 -209038767 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 8998474 8998636 -209038522 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 9000126 9000247 -209036911 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 9000416 9000485 -209036673 + GA-rich Low_complexity Low_complexity 3 70 0 7415 32 2 0 chr3 9000779 9001968 -209035190 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 9002135 9002220 -209034938 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 9002530 9002811 -209034347 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 9003264 9003298 -209033860 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 9003313 9003356 -209033802 + (TA)n Simple_repeat Simple_repeat 2 44 0 214 244 0 0 chr3 9003478 9003519 -209033639 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 9003577 9003627 -209033531 + (TA)n Simple_repeat Simple_repeat 2 52 0 1522 174 144 17 chr3 9003908 9004269 -209032889 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 9004582 9004646 -209032512 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 9005155 9005190 -209031968 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 9005190 9005230 -209031928 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 9005230 9005582 -209031576 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 9005582 9006106 -209031052 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 9006093 9006321 -209030837 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 9006352 9006542 -209030616 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 9006546 9007403 -209029755 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 9007448 9007732 -209029426 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 9007744 9009371 -209027787 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 9009806 9010116 -209027042 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 9010886 9010980 -209026178 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 9010991 9011371 -209025787 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 9011606 9011855 -209025303 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 9012258 9012286 -209024872 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr3 9012347 9012382 -209024776 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1157 101 6 24 chr3 9012388 9012557 -209024601 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 9014062 9014090 -209023068 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 9015086 9015181 -209021977 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 9015665 9015692 -209021466 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 9016571 9016875 -209020283 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 9016873 9016954 -209020204 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9016952 9017033 -209020125 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9017031 9017112 -209020046 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9017110 9017191 -209019967 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9017189 9017270 -209019888 + L1PA15 LINE L1 1489 1570 -5217 * 15280 210 21 16 chr3 9017268 9021754 -209015404 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 9021754 9022048 -209015110 + AluSg SINE Alu 2 296 -14 15280 210 21 16 chr3 9022048 9022855 -209014303 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 9022879 9022925 -209014233 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9023850 9024095 -209013063 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9025121 9025191 -209011967 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9025422 9026095 -209011063 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9026088 9026480 -209010678 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9026481 9026565 -209010593 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9026827 9027046 -209010112 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9027301 9027322 -209009836 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9028001 9028137 -209009021 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9028976 9029205 -209007953 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9029377 9029565 -209007593 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 9029571 9029739 -209007419 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 9029701 9029874 -209007284 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9030063 9030192 -209006966 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9030222 9030396 -209006762 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9030481 9030545 -209006613 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9031490 9031518 -209005640 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9031518 9031560 -209005598 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9032457 9032682 -209004476 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9032831 9032852 -209004306 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9032852 9033146 -209004012 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9033936 9034115 -209003043 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9034514 9034541 -209002617 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9034541 9034892 -209002266 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9034892 9035032 -209002126 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9035097 9035128 -209002030 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9035199 9035380 -209001778 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9035455 9035512 -209001646 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9035519 9036088 -209001070 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9036088 9036571 -209000587 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9036571 9037669 -208999489 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9037718 9037822 -208999336 - MER5B DNA MER1_type -71 107 7 2506 50 7 0 chr3 9038062 9038365 -208998793 + AluY SINE Alu 2 306 -5 309 179 0 0 chr3 9039340 9039386 -208997772 + (TG)n Simple_repeat Simple_repeat 2 50 -18 1974 169 31 6 chr3 9039386 9039741 -208997417 - THE1B LTR MaLR 0 364 1 309 179 0 0 chr3 9039741 9039761 -208997397 + (TG)n Simple_repeat Simple_repeat 49 68 0 247 281 0 0 chr3 9039825 9039882 -208997276 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9041259 9041480 -208995678 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9041911 9041946 -208995212 + AT_rich Low_complexity Low_complexity 1 35 0 2074 150 14 6 chr3 9044471 9044830 -208992328 - L1MA5 LINE L1 -478 5822 5461 2314 171 18 13 chr3 9044834 9045290 -208991868 + L1MA5 LINE L1 5843 6300 0 1004 322 29 17 chr3 9045476 9045978 -208991180 + MLT1H LTR MaLR 1 549 0 3841 175 4 4 chr3 9046383 9047085 -208990073 + L1MB1 LINE L1 5479 6180 -9 869 179 104 112 chr3 9047148 9047311 -208989847 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9047311 9047693 -208989465 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9047693 9047876 -208989282 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9047906 9047980 -208989178 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9048349 9048414 -208988744 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9050389 9050586 -208986572 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9050642 9050922 -208986236 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9050922 9050949 -208986209 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 2331 106 0 0 chr3 9052283 9052595 -208984563 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9053231 9053531 -208983627 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9053584 9053682 -208983476 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9054625 9054735 -208982423 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9054735 9054818 -208982340 + (TA)n Simple_repeat Simple_repeat 2 82 0 1746 224 38 33 chr3 9054842 9055235 -208981923 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9055432 9055721 -208981437 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9056682 9056931 -208980227 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9057302 9057323 -208979835 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9057472 9057535 -208979623 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9058470 9058500 -208978658 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9059248 9059379 -208977779 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9060532 9060637 -208976521 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9061963 9062237 -208974921 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9062237 9062534 -208974624 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9062534 9062576 -208974582 + L1ME4a LINE L1 5908 5949 -172 3144 167 86 28 chr3 9062576 9063263 -208973895 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9063263 9063367 -208973791 + L1ME4a LINE L1 5949 6052 -69 429 353 108 4 chr3 9063971 9064249 -208972909 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9064343 9065116 -208972042 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9065487 9065565 -208971593 + AT_rich Low_complexity Low_complexity 1 78 0 415 175 0 19 chr3 9065754 9065857 -208971301 + CT-rich Low_complexity Low_complexity 2 102 0 2448 63 0 0 chr3 9066369 9066671 -208970487 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9067066 9067366 -208969792 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9068732 9068803 -208968355 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9068961 9068991 -208968167 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9069285 9069416 -208967742 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9069330 9069436 -208967722 + MER5A DNA MER1_type 68 186 -3 * 361 302 35 35 chr3 9069466 9069582 -208967576 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9069590 9069674 -208967484 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9069794 9069846 -208967312 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9071313 9071667 -208965491 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9071798 9071833 -208965325 + AT_rich Low_complexity Low_complexity 1 35 0 5530 166 26 24 chr3 9072143 9073034 -208964124 + L1MA6 LINE L1 4422 5310 -990 1952 131 40 0 chr3 9073034 9073332 -208963826 + AluSx SINE Alu 1 310 -2 5530 166 26 24 chr3 9073332 9074115 -208963043 + L1MA6 LINE L1 5310 6090 -210 2156 103 7 3 chr3 9074115 9074406 -208962752 + AluSx SINE Alu 1 292 -20 231 114 0 0 chr3 9074406 9074441 -208962717 + (TA)n Simple_repeat Simple_repeat 2 36 0 5530 166 26 24 chr3 9074441 9074620 -208962538 + L1MA6 LINE L1 6089 6294 -6 771 314 89 14 chr3 9074635 9075119 -208962039 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9075604 9076082 -208961076 + L1MC/D LINE L1 4168 4659 -1487 316 290 41 14 chr3 9076189 9076334 -208960824 + L1MC/D LINE L1 4804 4952 -1194 301 244 67 110 chr3 9076548 9076757 -208960401 + L1MC/D LINE L1 5259 5458 -2350 329 306 57 78 chr3 9076768 9077049 -208960109 + L1MC/D LINE L1 5509 5783 -2025 419 264 183 10 chr3 9078177 9078381 -208958777 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9078400 9078422 -208958736 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2939 83 8 0 chr3 9078422 9078819 -208958339 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9080496 9080525 -208956633 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9080554 9080701 -208956457 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9080703 9080855 -208956303 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9080858 9081054 -208956104 - MER63A DNA MER1_type 0 210 1 41479 40 23 1 chr3 9081295 9087257 -208949901 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9087295 9087316 -208949842 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9088833 9088858 -208948300 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9088970 9089090 -208948068 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9091323 9091417 -208945741 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9092003 9092212 -208944946 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9092327 9092470 -208944688 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9092470 9092513 -208944645 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9092720 9093022 -208944136 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9093298 9093523 -208943635 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9095447 9095482 -208941676 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9095482 9095792 -208941366 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9095792 9095922 -208941236 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9096199 9096818 -208940340 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9096841 9097041 -208940117 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9097130 9097438 -208939720 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9097537 9097591 -208939567 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9097649 9098030 -208939128 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9098090 9098183 -208938975 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9098324 9098540 -208938618 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9099310 9099338 -208937820 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9100141 9100272 -208936886 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9100458 9100543 -208936615 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9100575 9100862 -208936296 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9100924 9101120 -208936038 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9101725 9102113 -208935045 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9104539 9104572 -208932586 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9104603 9104846 -208932312 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9104933 9105833 -208931325 - L1MC2 LINE L1 -9 6335 5408 32 0 0 0 chr3 9108696 9108728 -208928430 + AT_rich Low_complexity Low_complexity 1 32 0 1962 192 31 17 chr3 9109493 9109915 -208927243 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9109973 9110191 -208926967 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9110330 9111082 -208926076 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9111097 9111153 -208926005 - MLT1H LTR MaLR -379 170 116 2029 104 21 10 chr3 9111153 9111441 -208925717 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9111441 9111539 -208925619 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9112049 9112089 -208925069 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9112472 9112503 -208924655 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9113006 9113207 -208923951 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9113467 9113491 -208923667 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9113952 9114839 -208922319 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9114839 9115024 -208922134 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9115032 9115482 -208921676 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9115541 9115610 -208921548 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9115610 9115876 -208921282 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9115876 9116462 -208920696 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9116909 9117077 -208920081 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9118959 9119159 -208917999 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9119258 9119536 -208917622 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9119586 9119607 -208917551 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9120216 9120528 -208916630 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9122070 9122239 -208914919 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9122239 9122369 -208914789 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9122369 9122454 -208914704 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9122596 9122665 -208914493 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9123067 9123371 -208913787 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9123502 9123642 -208913516 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9123775 9123948 -208913210 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9124438 9124823 -208912335 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9124830 9124897 -208912261 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9126784 9126894 -208910264 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9126912 9127031 -208910127 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9127101 9127332 -208909826 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9127562 9127699 -208909459 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9127817 9128328 -208908830 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9128374 9128441 -208908717 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9129832 9130089 -208907069 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9130671 9130969 -208906189 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9131024 9131100 -208906058 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9131179 9131602 -208905556 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9132866 9132894 -208904264 + (A)n Simple_repeat Simple_repeat 1 28 0 1495 144 0 132 chr3 9134244 9134571 -208902587 + AluJo SINE Alu 11 294 -18 537 291 119 61 chr3 9134575 9134624 -208902534 - MLT1I LTR MaLR -45 364 319 2216 129 3 0 chr3 9134624 9134935 -208902223 - AluSx SINE Alu 0 312 1 537 291 119 61 chr3 9134935 9135229 -208901929 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9135251 9135655 -208901503 - MSTB LTR MaLR 0 426 1 298 311 39 10 chr3 9136123 9136226 -208900932 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9137881 9137945 -208899213 + (CA)n Simple_repeat Simple_repeat 2 65 0 291 200 0 0 chr3 9138160 9138215 -208898943 - L2 LINE L2 0 3313 3259 204 309 11 32 chr3 9138557 9138651 -208898507 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9139720 9139791 -208897367 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2184 126 0 3 chr3 9139925 9140226 -208896932 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9140272 9140315 -208896843 + AT_rich Low_complexity Low_complexity 1 43 0 385 360 29 6 chr3 9140468 9140643 -208896515 + MER5A DNA MER1_type 8 186 -3 278 271 90 71 chr3 9140749 9140904 -208896254 + MIR SINE MIR 41 198 -64 650 134 11 213 chr3 9141955 9142232 -208894926 - L1MA9 LINE L1 0 6312 6092 2126 104 3 3 chr3 9143914 9144201 -208892957 + AluSc SINE Alu 1 287 -22 367 218 0 32 chr3 9144934 9145058 -208892100 + CT-rich Low_complexity Low_complexity 1 120 0 5831 14 0 0 chr3 9145948 9146648 -208890510 - L1PA2 LINE L1 -202 5953 5254 1836 23 0 0 chr3 9146656 9146870 -208890288 + L1PA2 LINE L1 5942 6155 0 2118 129 3 3 chr3 9147267 9147576 -208889582 + AluSx SINE Alu 1 309 -3 186 310 17 17 chr3 9149838 9149896 -208887262 - L2 LINE L2 -26 3246 3189 189 296 19 0 chr3 9150803 9150857 -208886301 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9150907 9150971 -208886187 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9150981 9151077 -208886081 - MIR3 SINE MIR -26 182 87 1777 150 0 11 chr3 9151228 9151502 -208885656 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9151508 9151596 -208885562 + GA-rich Low_complexity Low_complexity 3 91 0 296 303 33 40 chr3 9151658 9151810 -208885348 - L2 LINE L2 -1034 2280 2130 1990 166 63 19 chr3 9151836 9152246 -208884912 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9152838 9152870 -208884288 + polypurine Low_complexity Low_complexity 4 35 0 1942 127 0 38 chr3 9152878 9153244 -208883914 + AluSx SINE Alu 11 365 0 806 288 82 63 chr3 9153352 9153469 -208883689 - MER34 LTR ERV1 0 542 429 1914 173 0 10 chr3 9153469 9153775 -208883383 - AluJb SINE Alu -7 305 3 806 288 82 63 chr3 9153775 9154184 -208882974 - MER34 LTR ERV1 -113 429 6 1264 195 62 94 chr3 9154378 9154603 -208882555 - MER34-int LTR ERV1 -165 6040 5809 2138 199 36 2 chr3 9154603 9155021 -208882137 - MSTB1 LTR MaLR 0 432 1 1264 195 62 94 chr3 9155021 9155413 -208881745 - MER34-int LTR ERV1 -396 5809 4190 1505 181 50 81 chr3 9155427 9155490 -208881668 - MER31-int LTR ERV1 -3613 1323 1260 2241 135 10 39 chr3 9155490 9155874 -208881284 + MER83C LTR ERV1 1 373 0 1505 181 50 81 chr3 9155874 9156329 -208880829 - MER31-int LTR ERV1 -3676 1260 821 2387 53 0 3 chr3 9156543 9156827 -208880331 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9157374 9157397 -208879761 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1821 135 7 7 chr3 9157398 9157672 -208879486 - AluSx SINE Alu -36 276 3 545 264 51 43 chr3 9157754 9157954 -208879204 - MER34 LTR ERV1 0 542 338 2823 177 91 56 chr3 9157954 9158656 -208878502 + LTR8A LTR ERV1 1 727 0 545 264 51 43 chr3 9158656 9158690 -208878468 - MER34 LTR ERV1 -204 338 306 447 241 0 9 chr3 9158785 9158897 -208878261 - MER34 LTR ERV1 -431 111 1 1591 220 58 114 chr3 9159637 9160427 -208876731 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9160804 9160841 -208876317 + AT_rich Low_complexity Low_complexity 1 37 0 650 254 78 15 chr3 9161215 9161420 -208875738 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9162271 9162473 -208874685 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9162796 9163105 -208874053 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9163108 9163335 -208873823 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9163715 9163901 -208873257 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9163977 9164039 -208873119 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9164105 9164439 -208872719 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9164439 9164752 -208872406 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9164752 9165007 -208872151 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9165028 9165159 -208871999 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9165441 9165588 -208871570 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9166217 9166991 -208870167 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9167142 9167230 -208869928 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9167296 9167323 -208869835 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9167327 9167526 -208869632 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9167614 9167710 -208869448 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9167710 9168004 -208869154 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9168004 9168604 -208868554 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9168602 9168787 -208868371 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9168811 9168856 -208868302 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9168871 9169052 -208868106 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9169147 9169923 -208867235 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9170325 9170408 -208866750 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9170968 9171152 -208866006 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9171158 9171247 -208865911 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9171265 9171379 -208865779 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9171615 9171731 -208865427 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9171731 9171906 -208865252 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9172237 9172409 -208864749 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9172409 9172705 -208864453 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9172705 9173041 -208864117 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9173650 9173737 -208863421 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9173816 9173864 -208863294 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9173881 9173966 -208863192 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9175280 9175415 -208861743 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9175927 9176133 -208861025 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9176311 9176404 -208860754 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9176424 9176542 -208860616 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9176599 9176627 -208860531 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9176652 9176682 -208860476 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9176822 9176941 -208860217 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9178181 9178237 -208858921 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9180227 9180353 -208856805 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9183418 9183505 -208853653 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9183992 9184292 -208852866 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9185208 9185438 -208851720 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9186335 9186528 -208850630 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9186734 9186768 -208850390 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9186769 9186838 -208850320 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9186955 9187073 -208850085 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9187087 9187167 -208849991 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9187167 9187240 -208849918 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9187244 9188111 -208849047 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9188121 9188180 -208848978 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9188489 9188520 -208848638 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9189512 9189579 -208847579 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9189633 9190247 -208846911 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9190247 9190538 -208846620 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9190564 9190789 -208846369 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9191150 9191390 -208845768 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9191637 9191860 -208845298 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9192448 9192805 -208844353 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9193013 9193042 -208844116 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9193151 9193447 -208843711 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9193765 9194067 -208843091 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9194270 9194328 -208842830 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9194975 9195019 -208842139 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9195535 9195582 -208841576 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9195808 9195949 -208841209 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9195953 9196114 -208841044 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9196248 9196431 -208840727 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9196442 9196614 -208840544 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9196681 9196741 -208840417 - L2 LINE L2 -218 3054 2997 213 180 0 0 chr3 9248270 9248320 -208788838 + GA-rich Low_complexity Low_complexity 3 52 0 468 118 13 0 chr3 9248633 9248709 -208788449 - MADE1 DNA Mariner 0 80 4 734 252 57 71 chr3 9249983 9250455 -208786703 - MLT1C LTR MaLR 0 626 6 300 111 0 0 chr3 9251029 9251083 -208786075 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 275 47 19 chr3 9252257 9252450 -208784708 - MER102b DNA MER1_type 0 341 80 260 157 8 164 chr3 9252762 9252896 -208784262 - MER112 DNA MER1_type -103 157 45 242 333 51 51 chr3 9252935 9253052 -208784106 - MIR3 SINE MIR -48 160 44 2984 310 76 32 chr3 9253155 9254923 -208782235 + L2 LINE L2 1307 3164 -149 234 189 0 84 chr3 9254924 9255019 -208782139 + L1MC4 LINE L1 6609 6695 -1347 291 291 60 82 chr3 9255021 9255155 -208782003 + L2 LINE L2 3182 3312 -1 309 135 0 0 chr3 9255191 9255243 -208781915 + (TAA)n Simple_repeat Simple_repeat 3 54 0 259 359 90 12 chr3 9255297 9255464 -208781694 - MIR SINE MIR -61 201 22 367 340 102 12 chr3 9255499 9255831 -208781327 + LTR16A LTR ERVL 1 362 -88 559 289 17 8 chr3 9256830 9257065 -208780093 + L1MC4 LINE L1 7665 7901 -141 235 204 0 0 chr3 9257066 9257120 -208780038 + L1MC4 LINE L1 7986 8039 -3 23 0 0 0 chr3 9257237 9257260 -208779898 + AT_rich Low_complexity Low_complexity 1 23 0 659 326 83 42 chr3 9257261 9257419 -208779739 + L2 LINE L2 2453 2603 -711 2383 42 0 11 chr3 9257419 9257736 -208779422 - AluY SINE Alu 0 314 1 659 326 83 42 chr3 9257736 9257913 -208779245 + L2 LINE L2 2603 2803 -511 23 54 0 0 chr3 9257919 9257956 -208779202 + AT_rich Low_complexity Low_complexity 1 37 0 250 185 0 0 chr3 9257991 9258045 -208779113 - L1MC4 LINE L1 -3 8039 7986 310 294 54 76 chr3 9258914 9259116 -208778042 + MIR SINE MIR 5 206 -56 535 262 0 14 chr3 9259295 9259440 -208777718 + MER63 DNA MER1_type 5 773 -289 375 248 20 0 chr3 9259457 9259558 -208777600 + Charlie8 DNA MER1_type 88 190 -2227 283 272 37 0 chr3 9259879 9259960 -208777198 - MIR SINE MIR -49 213 130 1401 211 82 39 chr3 9259971 9260411 -208776747 + MLT1C LTR MaLR 1 459 -8 220 167 0 0 chr3 9260576 9260618 -208776540 - MER5B DNA MER1_type -136 42 1 1769 173 3 22 chr3 9260939 9261257 -208775901 + AluJo SINE Alu 1 312 0 246 83 0 0 chr3 9261346 9261382 -208775776 + Alu SINE Alu 46 81 -94 438 298 61 33 chr3 9261445 9261626 -208775532 - MIR SINE MIR -65 197 12 195 379 35 0 chr3 9262321 9262408 -208774750 - L3 LINE CR1 -20 1557 1468 1968 138 0 52 chr3 9262799 9263124 -208774034 + AluJb SINE Alu 1 308 -4 1064 190 23 31 chr3 9264011 9264269 -208772889 + MLT1A1 LTR MaLR 110 365 0 403 211 65 16 chr3 9264642 9264765 -208772393 - MER104 DNA Tc2 -12 168 40 608 197 142 0 chr3 9264826 9264953 -208772205 - FRAM SINE Alu -30 146 2 423 250 62 0 chr3 9265680 9265792 -208771366 + MIR SINE MIR 2 120 -142 190 336 160 8 chr3 9266139 9266258 -208770900 - L2 LINE L2 0 3272 3136 2356 320 127 25 chr3 9266369 9268021 -208769137 - L2 LINE L2 -1449 1865 47 24 0 0 0 chr3 9269087 9269111 -208768047 + AT_rich Low_complexity Low_complexity 1 24 0 446 284 57 7 chr3 9269200 9269341 -208767817 + MIR SINE MIR 97 244 -18 911 232 93 87 chr3 9269867 9270337 -208766821 + L1ME2 LINE L1 5617 6262 -72 198 103 0 0 chr3 9270337 9270366 -208766792 + (CA)n Simple_repeat Simple_repeat 2 30 0 911 232 93 87 chr3 9270366 9270437 -208766721 + L1ME2 LINE L1 6262 6331 -3 191 365 24 0 chr3 9270584 9270669 -208766489 + L2 LINE L2 3139 3225 -47 1885 171 3 0 chr3 9272578 9272871 -208764287 - AluSg SINE Alu -16 294 1 2117 111 7 3 chr3 9272882 9273180 -208763978 - AluSx SINE Alu -13 299 1 186 43 0 0 chr3 9273242 9273265 -208763893 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 239 250 65 28 chr3 9273391 9273499 -208763659 - MIR SINE MIR -38 224 113 412 308 151 0 chr3 9273600 9273785 -208763373 - MIR SINE MIR 0 262 50 1065 144 18 1 chr3 9274045 9274295 -208762863 + L1MA4A LINE L1 6014 6247 -56 288 250 0 24 chr3 9274495 9274579 -208762579 - MIR SINE MIR -15 247 166 425 350 48 27 chr3 9275094 9275425 -208761733 + MLT1J2 LTR MaLR 113 450 0 1886 262 74 15 chr3 9275646 9275702 -208761456 + L1ME1 LINE L1 45 96 -6300 188 0 0 69 chr3 9275702 9275731 -208761427 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1886 262 74 15 chr3 9275731 9276338 -208760820 + L1ME1 LINE L1 96 747 -5649 340 113 0 0 chr3 9276344 9276406 -208760752 + L1ME1 LINE L1 2192 2253 -4143 2197 219 139 16 chr3 9276412 9277244 -208759914 + L1ME1 LINE L1 2384 3318 -2897 * 41320 44 5 2 chr3 9277243 9283379 -208753779 + L1PA4 LINE L1 1 6155 0 4757 247 51 22 chr3 9283358 9285934 -208751224 + L1ME1 LINE L1 3208 5885 -281 * 415 200 36 9 chr3 9286045 9286155 -208751003 + L1MA10 LINE L1 6219 6331 -3 225 269 58 39 chr3 9286155 9286259 -208750899 - MIR SINE MIR -49 213 108 269 246 0 0 chr3 9286650 9286719 -208750439 + (TGAA)n Simple_repeat Simple_repeat 4 72 0 2141 103 0 0 chr3 9288044 9288326 -208748832 + AluSc SINE Alu 1 282 -27 24 32 0 0 chr3 9288327 9288358 -208748800 + AT_rich Low_complexity Low_complexity 1 31 0 184 358 105 0 chr3 9289249 9289344 -208747814 + MIR3 SINE MIR 97 201 -7 479 332 55 14 chr3 9290360 9290580 -208746578 + MIR SINE MIR 34 262 0 344 223 28 137 chr3 9291484 9291695 -208745463 + L1ME4a LINE L1 5638 5825 -296 1920 233 58 109 chr3 9291789 9292425 -208744733 - LTR41 LTR ERVL -8 765 177 2030 108 0 51 chr3 9292425 9292776 -208744382 + AluSx SINE Alu 1 312 0 1920 233 58 109 chr3 9292776 9292945 -208744213 - LTR41 LTR ERVL -596 177 1 284 339 0 0 chr3 9293383 9293498 -208743660 + MER103 DNA DNA 6 120 -46 209 310 157 34 chr3 9293553 9293821 -208743337 + L2 LINE L2 2384 2684 -630 2236 119 0 0 chr3 9295379 9295690 -208741468 + AluSx SINE Alu 1 311 -1 212 300 0 0 chr3 9296513 9296563 -208740595 + L2 LINE L2 3182 3231 -82 341 302 40 16 chr3 9296603 9296729 -208740429 - L2 LINE L2 -27 3286 3158 269 294 25 68 chr3 9297107 9297270 -208739888 - MER117 DNA MER1_type -41 156 1 386 337 61 6 chr3 9298185 9298366 -208738792 - MIR SINE MIR -40 222 32 26 30 0 0 chr3 9299924 9299957 -208737201 + AT_rich Low_complexity Low_complexity 1 33 0 655 284 60 18 chr3 9300441 9300772 -208736386 + L1ME4a LINE L1 5620 5964 -157 752 18 9 28 chr3 9300895 9301004 -208736154 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 2048 127 0 0 chr3 9301012 9301288 -208735870 - AluSx SINE Alu -36 276 1 332 283 38 47 chr3 9301489 9301701 -208735457 + L1ME LINE L1 5617 5826 -295 21 57 0 0 chr3 9302268 9302303 -208734855 + AT_rich Low_complexity Low_complexity 1 35 0 826 337 78 20 chr3 9302395 9302885 -208734273 + L3 LINE CR1 1057 1574 -3 237 98 0 0 chr3 9303083 9303124 -208734034 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 713 254 0 44 chr3 9303876 9304057 -208733101 - MER5B DNA MER1_type -5 173 1 284 339 34 17 chr3 9304322 9304440 -208732718 - MIR SINE MIR -65 143 34 191 194 0 0 chr3 9305061 9305092 -208732066 - MIR SINE MIR -58 150 120 2054 142 3 0 chr3 9305119 9305430 -208731728 + AluSx SINE Alu 1 312 0 199 262 98 0 chr3 9306259 9306320 -208730838 + MIR SINE MIR 80 146 -116 1923 131 7 10 chr3 9307863 9308161 -208728997 - AluSx SINE Alu -15 297 1 24 32 0 0 chr3 9308642 9308673 -208728485 + AT_rich Low_complexity Low_complexity 1 31 0 1952 116 0 31 chr3 9308926 9309248 -208727910 + AluSx SINE Alu 1 313 0 262 250 89 27 chr3 9309498 9309610 -208727548 - MIR SINE MIR -60 202 84 264 305 0 0 chr3 9309788 9309847 -208727311 + L2 LINE L2 3214 3272 0 419 248 17 26 chr3 9309860 9309977 -208727181 - MIR SINE MIR -102 160 45 240 284 30 0 chr3 9310220 9310287 -208726871 + MIR SINE MIR 74 142 -66 604 262 107 5 chr3 9311202 9311389 -208725769 - MIR SINE MIR -1 261 56 1679 191 62 0 chr3 9311655 9311980 -208725178 + MLT1A1 LTR MaLR 1 345 -20 313 308 140 0 chr3 9312209 9312316 -208724842 + L2 LINE L2 3191 3312 -1 2180 101 3 0 chr3 9313733 9314021 -208723137 + AluSg SINE Alu 1 289 -21 268 378 61 6 chr3 9315813 9315993 -208721165 + L3 LINE CR1 1375 1564 -13 453 269 6 25 chr3 9316076 9316236 -208720922 - MER103 DNA DNA -2 164 8 220 299 13 0 chr3 9317133 9317210 -208719948 + L3b LINE CR1 1181 1258 -325 466 252 9 0 chr3 9317702 9317813 -208719345 - FLAM_A SINE Alu -15 127 16 401 298 29 41 chr3 9318014 9318185 -208718973 + MLT1J2 LTR MaLR 279 447 -3 261 363 44 0 chr3 9318883 9318996 -208718162 - L2 LINE L2 0 3272 3155 315 336 28 28 chr3 9319831 9319974 -208717184 + MIR3 SINE MIR 5 147 -61 215 350 48 10 chr3 9320855 9320958 -208716200 + MIR3 SINE MIR 101 207 -1 700 199 8 0 chr3 9321229 9321360 -208715798 + FLAM_C SINE Alu 1 132 -1 881 163 0 6 chr3 9321416 9321582 -208715576 + L1MA10 LINE L1 6167 6331 -3 21 0 0 0 chr3 9321593 9321614 -208715544 + AT_rich Low_complexity Low_complexity 1 21 0 340 275 169 38 chr3 9322300 9322460 -208714698 + MLT1A1 LTR MaLR 369 549 0 476 321 61 57 chr3 9322479 9323415 -208713743 + L1ME LINE L1 3803 4745 -1401 1366 227 14 7 chr3 9323415 9323710 -208713448 + AluJo SINE Alu 1 297 -15 476 321 61 57 chr3 9323710 9323807 -208713351 + L1ME LINE L1 4745 4840 -1306 511 298 94 12 chr3 9323952 9324123 -208713035 - MIR SINE MIR -67 195 11 529 315 91 20 chr3 9324419 9324914 -208712244 + L1ME LINE L1 5255 5784 -378 288 0 0 0 chr3 9325551 9325583 -208711575 + (TG)n Simple_repeat Simple_repeat 2 33 0 235 258 45 0 chr3 9326593 9326682 -208710476 + A-rich Low_complexity Low_complexity 4 96 0 2374 82 0 28 chr3 9326798 9327116 -208710042 - AluSc SINE Alu 0 309 1 208 360 0 20 chr3 9328516 9328616 -208708542 + MIR SINE MIR 45 142 -66 273 336 69 8 chr3 9329156 9329287 -208707871 + MIR SINE MIR 124 262 0 295 317 63 0 chr3 9329349 9329491 -208707667 - MIR SINE MIR -57 205 55 615 179 172 13 chr3 9329584 9329735 -208707423 - FRAM SINE Alu 0 176 2 694 312 24 20 chr3 9330293 9330540 -208706618 + LTR33 LTR ERVL 45 292 -229 299 258 281 6 chr3 9330805 9330983 -208706175 - MIR SINE MIR -2 260 34 788 209 70 0 chr3 9331014 9331186 -208705972 - MER5A DNA MER1_type -2 187 4 449 287 54 0 chr3 9332843 9332972 -208704186 + MIR SINE MIR 59 194 -68 336 200 0 0 chr3 9333821 9333901 -208703257 + (TA)n Simple_repeat Simple_repeat 2 81 0 223 338 188 6 chr3 9335244 9335404 -208701754 + MIR SINE MIR 64 252 -10 318 50 0 0 chr3 9335413 9335453 -208701705 + (CAT)n Simple_repeat Simple_repeat 2 41 0 351 276 24 8 chr3 9335919 9336042 -208701116 - LTR67 LTR ERVL -13 544 420 351 354 31 15 chr3 9336159 9336289 -208700869 - LTR67 LTR ERVL -316 241 110 33981 38 0 0 chr3 9336289 9341201 -208695957 + L1PA3 LINE L1 1239 6152 -3 294 258 89 57 chr3 9341486 9341610 -208695548 + MIR SINE MIR 91 218 -44 249 33 0 0 chr3 9341633 9341663 -208695495 + (TTA)n Simple_repeat Simple_repeat 1 30 0 183 371 21 67 chr3 9341703 9341897 -208695261 - MIR SINE MIR -30 232 48 1673 93 4 39 chr3 9341924 9342181 -208694977 - L1PA6 LINE L1 0 6154 5907 1181 161 55 0 chr3 9342217 9342306 -208694852 + L1MA9 LINE L1 6062 6145 -167 234 62 0 0 chr3 9342306 9342338 -208694820 + (CA)n Simple_repeat Simple_repeat 1 32 0 1181 161 55 0 chr3 9342338 9342484 -208694674 + L1MA9 LINE L1 6145 6310 -2 2542 198 2 10 chr3 9342841 9343331 -208693827 + MER66B LTR ERV1 1 486 0 2247 120 0 0 chr3 9343536 9343844 -208693314 + AluSg SINE Alu 1 308 -2 213 262 0 0 chr3 9343848 9343890 -208693268 - MIR SINE MIR -89 119 78 374 253 24 0 chr3 9344079 9344162 -208692996 - L3 LINE CR1 -100 1477 1393 35 78 0 0 chr3 9345096 9345173 -208691985 + AT_rich Low_complexity Low_complexity 1 77 0 477 296 132 38 chr3 9345195 9345742 -208691416 + L1ME4a LINE L1 5320 5917 -204 798 230 0 0 chr3 9345870 9346035 -208691123 - FRAM SINE Alu -12 164 1 297 0 0 0 chr3 9346479 9346512 -208690646 + (CA)n Simple_repeat Simple_repeat 2 34 0 1039 93 42 3 chr3 9346686 9346878 -208690280 - L1MC/D LINE L1 -738 5430 5254 3173 71 7 0 chr3 9346879 9347304 -208689854 + L1PA10 LINE L1 5741 6168 0 26 74 0 0 chr3 9347488 9347542 -208689616 + AT_rich Low_complexity Low_complexity 1 54 0 15280 209 24 18 chr3 9348793 9352730 -208684428 + L1PA15 LINE L1 2841 6799 -804 2105 126 3 0 chr3 9352730 9353024 -208684134 + AluSg SINE Alu 2 296 -14 15280 209 24 18 chr3 9353024 9353831 -208683327 + L1PA15 LINE L1 6799 7600 -3 32 43 0 0 chr3 9353855 9353901 -208683257 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9354826 9355071 -208682087 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9356097 9356167 -208680991 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9356398 9357071 -208680087 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9357064 9357456 -208679702 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9357457 9357541 -208679617 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9357803 9358022 -208679136 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9358277 9358298 -208678860 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9358977 9359113 -208678045 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9359952 9360181 -208676977 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9360353 9360541 -208676617 + L2 LINE L2 2988 3171 -142 412 172 65 6 chr3 9360546 9360715 -208676443 + (TA)n Simple_repeat Simple_repeat 2 180 0 * 414 127 58 58 chr3 9360677 9360850 -208676308 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9361039 9361168 -208675990 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9361198 9361372 -208675786 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9361457 9361521 -208675637 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9362465 9362493 -208674665 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9362493 9362535 -208674623 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9363432 9363657 -208673501 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9363806 9363827 -208673331 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9363827 9364121 -208673037 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9364911 9365090 -208672068 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9365489 9365516 -208671642 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9365516 9365867 -208671291 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9365867 9366007 -208671151 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9366072 9366103 -208671055 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9366174 9366355 -208670803 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9366430 9366487 -208670671 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9366494 9367063 -208670095 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9367063 9367546 -208669612 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9367546 9368644 -208668514 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9368693 9368797 -208668361 - MER5B DNA MER1_type -71 107 7 2539 49 7 0 chr3 9369037 9369344 -208667814 + AluY SINE Alu 2 310 -1 300 91 0 0 chr3 9370318 9370362 -208666796 + (TG)n Simple_repeat Simple_repeat 1 44 0 1974 169 31 6 chr3 9370364 9370719 -208666439 - THE1B LTR MaLR 0 364 1 247 281 0 0 chr3 9370803 9370860 -208666298 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9372237 9372458 -208664700 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9372889 9372924 -208664234 + AT_rich Low_complexity Low_complexity 1 35 0 2089 148 14 6 chr3 9375450 9375809 -208661349 - L1MA5 LINE L1 -478 5822 5461 2376 172 9 13 chr3 9375813 9376273 -208660885 + L1MA5 LINE L1 5843 6300 0 1033 301 32 60 chr3 9376459 9376956 -208660202 + MLT1H LTR MaLR 1 549 0 3811 175 4 4 chr3 9377361 9378057 -208659101 + L1MB1 LINE L1 5479 6174 -15 869 179 104 112 chr3 9378128 9378291 -208658867 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9378291 9378673 -208658485 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9378673 9378856 -208658302 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9378886 9378960 -208658198 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9379329 9379394 -208657764 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9381369 9381566 -208655592 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9381622 9381902 -208655256 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9381902 9381929 -208655229 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2331 106 0 0 chr3 9383263 9383575 -208653583 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9384211 9384511 -208652647 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9384564 9384662 -208652496 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9385605 9385715 -208651443 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9385715 9385798 -208651360 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 9385822 9386215 -208650943 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9386412 9386701 -208650457 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9387662 9387911 -208649247 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9388282 9388303 -208648855 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9388452 9388515 -208648643 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9389450 9389480 -208647678 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9390228 9390359 -208646799 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9391512 9391617 -208645541 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9392943 9393217 -208643941 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9393217 9393514 -208643644 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9393514 9393556 -208643602 + L1ME4a LINE L1 5908 5949 -172 3134 167 86 28 chr3 9393556 9394243 -208642915 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9394243 9394347 -208642811 + L1ME4a LINE L1 5949 6052 -69 439 349 108 4 chr3 9394951 9395229 -208641929 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9395323 9396096 -208641062 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9396467 9396545 -208640613 + AT_rich Low_complexity Low_complexity 1 78 0 353 195 0 11 chr3 9396734 9396821 -208640337 + CT-rich Low_complexity Low_complexity 2 87 0 2448 63 0 0 chr3 9397333 9397635 -208639523 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9398032 9398332 -208638826 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9399698 9399769 -208637389 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9399927 9399957 -208637201 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9400251 9400382 -208636776 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9400296 9400402 -208636756 + MER5A DNA MER1_type 68 186 -3 * 334 310 35 35 chr3 9400432 9400548 -208636610 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9400556 9400640 -208636518 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9400761 9400813 -208636345 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9402280 9402634 -208634524 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9402765 9402800 -208634358 + AT_rich Low_complexity Low_complexity 1 35 0 4752 182 26 40 chr3 9403110 9404001 -208633157 + L1MA4 LINE L1 4422 5325 -975 1944 131 40 0 chr3 9404001 9404298 -208632860 + AluSx SINE Alu 1 309 -3 4752 182 26 40 chr3 9404298 9405081 -208632077 + L1MA4 LINE L1 5325 6081 -219 2184 102 7 3 chr3 9405081 9405375 -208631783 + AluSx SINE Alu 1 295 -17 4752 182 26 40 chr3 9405375 9405586 -208631572 + L1MA4 LINE L1 6081 6294 -6 771 314 89 14 chr3 9405601 9406085 -208631073 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9406570 9407048 -208630110 + L1ME4a LINE L1 4168 4659 -1487 306 290 41 14 chr3 9407155 9407300 -208629858 + L1ME4a LINE L1 4804 4952 -1194 302 239 67 110 chr3 9407514 9407723 -208629435 + L1ME4a LINE L1 5259 5458 -2350 318 310 57 78 chr3 9407734 9408015 -208629143 + L1ME4a LINE L1 5509 5783 -2025 419 264 183 10 chr3 9409143 9409347 -208627811 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9409366 9409388 -208627770 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2921 86 8 0 chr3 9409388 9409785 -208627373 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9411466 9411495 -208625663 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9411524 9411671 -208625487 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9411673 9411825 -208625333 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9411828 9412024 -208625134 - MER63A DNA MER1_type 0 210 1 41706 39 23 1 chr3 9412265 9418227 -208618931 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9418265 9418286 -208618872 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9419803 9419828 -208617330 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9419940 9420060 -208617098 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9422293 9422387 -208614771 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9422973 9423182 -208613976 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9423297 9423440 -208613718 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9423440 9423483 -208613675 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9423690 9423992 -208613166 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9424268 9424493 -208612665 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9426417 9426452 -208610706 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9426452 9426762 -208610396 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9426762 9426892 -208610266 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9427169 9427788 -208609370 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9427811 9428011 -208609147 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9428100 9428408 -208608750 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9428507 9428561 -208608597 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9428619 9429000 -208608158 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9429060 9429153 -208608005 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9429294 9429510 -208607648 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9430279 9430307 -208606851 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9431110 9431241 -208605917 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9431427 9431512 -208605646 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9431544 9431831 -208605327 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9431893 9432089 -208605069 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9432694 9433082 -208604076 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9435513 9435546 -208601612 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9435577 9435820 -208601338 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9435907 9436807 -208600351 - L1MC2 LINE L1 -9 6335 5408 213 65 0 0 chr3 9439670 9439701 -208597457 + (T)n Simple_repeat Simple_repeat 1 31 0 1962 192 31 17 chr3 9440468 9440890 -208596268 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9440948 9441166 -208595992 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9441305 9442057 -208595101 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9442072 9442128 -208595030 - MLT1H LTR MaLR -379 170 116 2016 108 21 10 chr3 9442128 9442416 -208594742 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9442416 9442514 -208594644 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9443024 9443064 -208594094 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9443447 9443478 -208593680 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9443981 9444182 -208592976 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9444442 9444466 -208592692 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9444927 9445814 -208591344 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9445814 9445999 -208591159 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9446007 9446457 -208590701 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9446516 9446585 -208590573 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9446585 9446851 -208590307 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9446851 9447437 -208589721 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9447884 9448052 -208589106 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9449934 9450134 -208587024 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9450233 9450511 -208586647 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9450561 9450582 -208586576 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9451191 9451503 -208585655 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9453045 9453214 -208583944 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9453214 9453344 -208583814 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9453344 9453429 -208583729 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9453571 9453640 -208583518 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9454042 9454346 -208582812 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9454477 9454617 -208582541 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9454750 9454923 -208582235 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9455413 9455798 -208581360 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9455805 9455872 -208581286 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9457759 9457869 -208579289 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9457887 9458006 -208579152 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9458076 9458307 -208578851 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9458537 9458674 -208578484 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9458792 9459303 -208577855 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9459349 9459416 -208577742 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9460807 9461064 -208576094 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9461646 9461944 -208575214 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9461999 9462075 -208575083 + L2 LINE L2 3188 3263 -9 2458 151 2 28 chr3 9462154 9462577 -208574581 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9463841 9463869 -208573289 + (A)n Simple_repeat Simple_repeat 1 28 0 1479 144 0 132 chr3 9465219 9465546 -208571612 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9465550 9465599 -208571559 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9465599 9465910 -208571248 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9465910 9466204 -208570954 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9466226 9466630 -208570528 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9467098 9467201 -208569957 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9468856 9468920 -208568238 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9469135 9469190 -208567968 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9469532 9469626 -208567532 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9470695 9470766 -208566392 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9470900 9471201 -208565957 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9471247 9471290 -208565868 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9471443 9471618 -208565540 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9471724 9471879 -208565279 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9472930 9473207 -208563951 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9474891 9475176 -208561982 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9475909 9476033 -208561125 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9476049 9476307 -208560851 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9476923 9477623 -208559535 - L1PA2 LINE L1 -202 5953 5254 1826 23 0 0 chr3 9477631 9477845 -208559313 + L1PA2 LINE L1 5942 6155 0 2101 121 3 3 chr3 9478242 9478540 -208558618 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9480813 9480871 -208556287 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9481778 9481832 -208555326 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9481882 9481946 -208555212 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9481956 9482052 -208555106 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9482203 9482477 -208554681 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9482483 9482571 -208554587 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9482633 9482785 -208554373 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9482811 9483221 -208553937 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9483813 9483845 -208553313 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9483853 9484219 -208552939 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9484327 9484444 -208552714 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9484444 9484750 -208552408 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9484750 9485159 -208551999 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9485353 9485578 -208551580 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9485578 9485996 -208551162 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9485996 9486388 -208550770 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9486398 9486465 -208550693 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9486465 9486849 -208550309 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9486849 9487353 -208549805 - MER31-int LTR ERV1 -3678 1258 783 2387 53 0 3 chr3 9487518 9487802 -208549356 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9488349 9488372 -208548786 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1821 135 7 7 chr3 9488373 9488647 -208548511 - AluSx SINE Alu -36 276 3 545 264 51 43 chr3 9488729 9488929 -208548229 - MER34 LTR ERV1 0 542 338 2823 177 91 56 chr3 9488929 9489631 -208547527 + LTR8A LTR ERV1 1 727 0 545 264 51 43 chr3 9489631 9489665 -208547493 - MER34 LTR ERV1 -204 338 306 447 241 0 9 chr3 9489760 9489872 -208547286 - MER34 LTR ERV1 -431 111 1 1591 220 58 114 chr3 9490612 9491402 -208545756 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9491779 9491816 -208545342 + AT_rich Low_complexity Low_complexity 1 37 0 650 254 78 15 chr3 9492190 9492395 -208544763 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9493246 9493448 -208543710 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9493771 9494080 -208543078 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9494083 9494310 -208542848 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9494690 9494876 -208542282 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9494952 9495014 -208542144 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9495080 9495414 -208541744 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9495414 9495727 -208541431 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9495727 9495982 -208541176 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9496003 9496134 -208541024 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9496416 9496563 -208540595 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9497192 9497966 -208539192 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9498117 9498205 -208538953 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9498271 9498298 -208538860 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9498302 9498501 -208538657 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9498589 9498685 -208538473 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9498685 9498979 -208538179 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9498979 9499579 -208537579 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9499577 9499762 -208537396 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9499786 9499831 -208537327 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9499846 9500027 -208537131 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9500122 9500898 -208536260 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9501300 9501383 -208535775 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9501943 9502127 -208535031 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9502133 9502222 -208534936 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9502240 9502354 -208534804 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9502590 9502706 -208534452 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9502706 9502881 -208534277 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9503212 9503384 -208533774 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9503384 9503680 -208533478 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9503680 9504016 -208533142 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9504625 9504712 -208532446 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9504791 9504839 -208532319 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9504856 9504941 -208532217 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9506255 9506390 -208530768 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9506902 9507108 -208530050 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9507286 9507379 -208529779 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9507399 9507517 -208529641 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9507574 9507602 -208529556 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9507627 9507657 -208529501 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9507797 9507916 -208529242 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9509156 9509212 -208527946 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9511202 9511328 -208525830 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9514393 9514480 -208522678 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9514967 9515267 -208521891 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9516183 9516413 -208520745 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9517310 9517503 -208519655 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9517709 9517743 -208519415 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9517744 9517813 -208519345 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9517930 9518048 -208519110 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9518062 9518142 -208519016 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9518142 9518215 -208518943 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9518219 9519086 -208518072 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9519096 9519155 -208518003 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9519464 9519495 -208517663 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9520487 9520554 -208516604 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9520608 9521222 -208515936 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9521222 9521513 -208515645 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9521539 9521764 -208515394 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9522125 9522365 -208514793 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9522612 9522835 -208514323 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9523423 9523780 -208513378 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9523988 9524017 -208513141 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9524126 9524422 -208512736 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9524740 9525042 -208512116 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9525245 9525303 -208511855 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9525950 9525994 -208511164 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9526510 9526557 -208510601 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9526783 9526924 -208510234 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9526928 9527089 -208510069 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9527223 9527406 -208509752 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9527417 9527589 -208509569 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9527656 9527716 -208509442 - L2 LINE L2 -218 3054 2997 32 0 0 0 chr3 9578353 9578385 -208458773 + AT_rich Low_complexity Low_complexity 1 32 0 1962 192 31 17 chr3 9579150 9579572 -208457586 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9579630 9579848 -208457310 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9579987 9580739 -208456419 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9580754 9580810 -208456348 - MLT1H LTR MaLR -379 170 116 2029 104 21 10 chr3 9580810 9581098 -208456060 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9581098 9581196 -208455962 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9581706 9581746 -208455412 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9582129 9582160 -208454998 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9582663 9582864 -208454294 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9583124 9583148 -208454010 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9583609 9584496 -208452662 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9584496 9584681 -208452477 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9584689 9585139 -208452019 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9585198 9585267 -208451891 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9585267 9585533 -208451625 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9585533 9586119 -208451039 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9586566 9586734 -208450424 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9588616 9588816 -208448342 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9588915 9589193 -208447965 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9589243 9589264 -208447894 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9589873 9590185 -208446973 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9591727 9591896 -208445262 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9591896 9592026 -208445132 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9592026 9592111 -208445047 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9592253 9592322 -208444836 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9592724 9593028 -208444130 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9593159 9593299 -208443859 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9593432 9593605 -208443553 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9594095 9594480 -208442678 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9594487 9594554 -208442604 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9596441 9596551 -208440607 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9596569 9596688 -208440470 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9596758 9596989 -208440169 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9597219 9597356 -208439802 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9597474 9597985 -208439173 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9598031 9598098 -208439060 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9599489 9599746 -208437412 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9600328 9600626 -208436532 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9600681 9600757 -208436401 + L2 LINE L2 3188 3263 -9 2429 154 2 28 chr3 9600836 9601259 -208435899 - MSTB1 LTR MaLR -20 412 1 261 0 0 0 chr3 9602523 9602552 -208434606 + (A)n Simple_repeat Simple_repeat 1 29 0 1479 144 0 132 chr3 9603902 9604229 -208432929 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9604233 9604282 -208432876 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9604282 9604593 -208432565 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9604593 9604887 -208432271 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9604909 9605313 -208431845 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9605781 9605884 -208431274 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9607539 9607603 -208429555 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9607818 9607873 -208429285 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9608215 9608309 -208428849 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9609378 9609449 -208427709 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9609583 9609884 -208427274 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9609930 9609973 -208427185 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9610126 9610301 -208426857 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9610407 9610562 -208426596 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9611613 9611890 -208425268 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9613574 9613859 -208423299 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9614592 9614716 -208422442 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9614732 9614990 -208422168 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9615606 9616306 -208420852 - L1PA4 LINE L1 -202 5953 5254 1572 66 9 0 chr3 9616314 9616526 -208420632 + L1PA4 LINE L1 5942 6155 0 2101 121 3 3 chr3 9616925 9617223 -208419935 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9619496