1762 181 3 13 chr3_random 412 726 -8427555 - AluJo SINE Alu -1 311 1 1126 146 6 0 chr3_random 897 1062 -8427219 - AluJb SINE Alu -11 301 136 1931 157 3 13 chr3_random 1075 1387 -8426894 - AluJo SINE Alu -3 309 1 305 286 0 0 chr3_random 1523 1607 -8426674 - MIR3 SINE MIR -39 169 86 1876 238 80 43 chr3_random 1766 2368 -8425913 - MLT1E2 LTR MaLR 0 626 3 181 300 45 27 chr3_random 2497 2607 -8425674 + L2 LINE L2 2695 2806 -508 245 212 91 0 chr3_random 2754 2820 -8425461 + LTR45 LTR ERV1 73 144 -381 220 200 15 46 chr3_random 2827 2892 -8425389 + MER5A DNA MER1_type 25 87 -102 701 203 13 13 chr3_random 2892 3045 -8425236 + LTR45 LTR ERV1 373 525 0 352 344 12 6 chr3_random 3045 3205 -8425076 + L2 LINE L2 2899 3059 -213 549 226 58 26 chr3_random 3292 3447 -8424834 - MLT1H1 LTR MaLR -7 583 424 768 249 105 12 chr3_random 3480 3743 -8424538 - MLT1H1 LTR MaLR -298 257 9 190 254 16 63 chr3_random 3837 3900 -8424381 + L2 LINE L2 3213 3272 0 354 272 194 19 chr3_random 4566 4772 -8423509 + MIR SINE MIR 20 261 -1 1314 198 82 41 chr3_random 5092 5206 -8423075 + MER89 LTR ERV1 166 274 -285 2340 84 3 7 chr3_random 5206 5504 -8422777 + AluSp SINE Alu 3 299 -14 1314 198 82 41 chr3_random 5504 5704 -8422577 + MER89 LTR ERV1 274 493 -66 2041 211 64 2 chr3_random 5704 6139 -8422142 - MLT1C LTR MaLR 0 467 6 374 276 68 31 chr3_random 6262 6425 -8421856 - MLT1J2 LTR MaLR -9 441 273 344 271 42 0 chr3_random 6428 6524 -8421757 - MLT1J2 LTR MaLR -306 144 45 396 277 69 48 chr3_random 6966 7154 -8421127 + MIR SINE MIR 9 200 -62 2413 107 16 40 chr3_random 7905 8278 -8420003 + THE1B LTR MaLR 1 364 0 1733 171 0 20 chr3_random 8605 8897 -8419384 + AluJb SINE Alu 1 286 -26 357 224 13 0 chr3_random 8989 9065 -8419216 + MER51A LTR ERV1 471 547 -87 468 303 54 47 chr3_random 9355 9672 -8418609 - L2 LINE L2 -31 3282 2964 595 172 99 7 chr3_random 10079 10230 -8418051 + MIR SINE MIR 58 222 -40 278 280 43 11 chr3_random 10252 10345 -8417936 - MER5A DNA MER1_type -27 162 67 3887 181 52 24 chr3_random 10648 11450 -8416831 + LTR1B LTR ERV1 2 826 0 1053 238 29 68 chr3_random 11613 11924 -8416357 - MER102b DNA MER1_type -22 319 21 457 186 21 31 chr3_random 12065 12162 -8416119 - MER5B DNA MER1_type -8 170 75 280 297 203 0 chr3_random 13742 13890 -8414391 + MIR SINE MIR 20 197 -65 490 259 37 7 chr3_random 14028 14163 -8414118 + MER91C DNA MER1_type 2 140 0 441 180 0 133 chr3_random 14302 14430 -8413851 + MER58A DNA MER1_type 37 147 0 * 1205 151 26 43 chr3_random 14425 14657 -8413624 + Tigger2a DNA MER2_type 2 229 -205 1677 152 12 64 chr3_random 14657 14986 -8413295 - AluJb SINE Alu 0 312 1 407 243 124 130 chr3_random 14987 15432 -8412849 + L2 LINE L2 535 976 -2338 2153 119 0 7 chr3_random 15465 15760 -8412521 + AluSq SINE Alu 1 293 -20 14015 121 22 77 chr3_random 15824 16417 -8411864 + Tigger1 DNA MER2_type 20 644 -1774 1976 157 3 3 chr3_random 16417 16729 -8411552 + AluJb SINE Alu 1 312 0 14015 121 22 77 chr3_random 16729 17320 -8410961 + Tigger1 DNA MER2_type 644 1266 -1152 1037 76 15 0 chr3_random 17320 17451 -8410830 + AluY SINE Alu 1 133 -178 14015 121 22 77 chr3_random 17451 18672 -8409609 + Tigger1 DNA MER2_type 1266 2418 0 1137 255 117 17 chr3_random 18713 19175 -8409106 + L2 LINE L2 1535 2042 -1272 318 281 71 59 chr3_random 19357 19542 -8408739 + MIR SINE MIR 8 193 -68 238 146 0 62 chr3_random 19569 19617 -8408664 - Charlie8 DNA MER1_type -1005 1412 1368 1824 153 3 3 chr3_random 20111 20419 -8407862 + AluJb SINE Alu 1 308 0 524 263 27 47 chr3_random 20419 20598 -8407683 + MIR SINE MIR 58 232 -30 572 181 48 0 chr3_random 20677 20782 -8407499 - MER81 DNA DNA 0 114 5 381 235 12 0 chr3_random 20967 21052 -8407229 - L2 LINE L2 0 3313 3228 1155 198 132 89 chr3_random 21763 22257 -8406024 - MLT1H1 LTR MaLR 0 555 41 2386 100 0 0 chr3_random 22742 23041 -8405240 - AluSx SINE Alu -13 299 1 239 313 0 0 chr3_random 23176 23243 -8405038 - L2 LINE L2 -4 3309 3243 212 304 144 17 chr3_random 23387 23568 -8404713 + MIR SINE MIR 59 262 0 282 209 149 0 chr3_random 23826 23893 -8404388 + MIR SINE MIR 80 156 -106 2079 142 0 3 chr3_random 23943 24246 -8404035 - AluSx SINE Alu -10 302 1 221 273 0 15 chr3_random 24273 24339 -8403942 + MIR SINE MIR 48 112 -150 2401 103 0 0 chr3_random 25507 25817 -8402464 - AluSq SINE Alu -3 310 1 278 293 81 0 chr3_random 25817 25916 -8402365 - MIR SINE MIR -62 146 40 21 0 0 0 chr3_random 27564 27585 -8400696 + AT_rich Low_complexity Low_complexity 1 21 0 1965 99 6 58 chr3_random 28108 28420 -8399861 - AluSx SINE Alu -16 296 1 21 89 0 0 chr3_random 29107 29163 -8399118 + GC_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr3_random 29538 29562 -8398719 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3_random 29702 29724 -8398557 + GC_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr3_random 29880 29918 -8398363 + GC_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3_random 31612 31634 -8396647 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr3_random 32465 32489 -8395792 + (T)n Simple_repeat Simple_repeat 1 24 0 196 50 0 75 chr3_random 36163 36203 -8392078 + (TTCCC)n Simple_repeat Simple_repeat 5 41 0 * 895 216 0 6 chr3_random 36197 36546 -8391735 - AluJ SINE Alu 0 483 136 22 35 0 0 chr3_random 38430 38459 -8389822 + AT_rich Low_complexity Low_complexity 1 29 0 343 270 206 56 chr3_random 38485 38844 -8389437 - L1ME LINE L1 -359 5762 5350 237 178 0 0 chr3_random 39660 39705 -8388576 + (TG)n Simple_repeat Simple_repeat 2 46 0 4580 176 26 19 chr3_random 40747 41646 -8386635 - L1MB7 LINE L1 0 6184 5280 2280 116 0 0 chr3_random 46579 46880 -8381401 + AluSq SINE Alu 1 301 -12 2551 77 0 0 chr3_random 48891 49202 -8379079 - AluY SINE Alu 0 311 1 802 162 0 22 chr3_random 51302 51438 -8376843 - AluJ SINE Alu -169 133 1 818 193 32 73 chr3_random 53449 53564 -8374717 + MER3 DNA MER1_type 1 104 -105 2445 66 3 7 chr3_random 53564 53867 -8374414 + AluY SINE Alu 1 302 -9 818 193 32 73 chr3_random 53867 53969 -8374312 + MER3 DNA MER1_type 104 209 0 2854 116 14 38 chr3_random 54750 54884 -8373397 + L1MB3 LINE L1 5695 5831 -352 1859 146 0 36 chr3_random 54884 55185 -8373096 + AluJo SINE Alu 2 291 -21 2854 116 14 38 chr3_random 55185 55551 -8372730 + L1MB3 LINE L1 5831 6183 0 2376 94 3 7 chr3_random 55560 55868 -8372413 + AluSx SINE Alu 1 307 -5 1294 135 4 52 chr3_random 58046 58276 -8370005 - MER20 DNA MER1_type 0 219 1 969 107 8 0 chr3_random 59111 59242 -8369039 - AluSx SINE Alu -159 153 22 266 191 180 11 chr3_random 59530 59619 -8368662 - L1ME4a LINE L1 -23 6098 5995 1872 166 20 3 chr3_random 59895 60197 -8368084 - AluSx SINE Alu -3 309 3 1745 161 111 17 chr3_random 60481 60834 -8367447 - MLT1B LTR MaLR 0 390 5 303 225 11 56 chr3_random 61015 61104 -8367177 - L2 LINE L2 -2 3311 3227 1807 186 8 26 chr3_random 61109 61491 -8366790 + MER96B DNA MER1_type? 2 376 -41 184 291 86 17 chr3_random 61514 61631 -8366650 - L2 LINE L2 -85 3228 3104 2107 135 10 0 chr3_random 62196 62492 -8365789 - AluSq SINE Alu -14 299 1 2002 146 7 0 chr3_random 62504 62805 -8365476 - AluSx SINE Alu -9 303 1 1262 183 58 0 chr3_random 62869 63110 -8365171 + AluJb SINE Alu 52 306 -6 271 284 114 0 chr3_random 63116 63204 -8365077 - MIR SINE MIR -116 146 49 264 374 7 19 chr3_random 63442 63597 -8364684 + MIR SINE MIR 2 154 -108 1950 147 34 0 chr3_random 64633 64925 -8363356 - AluJo SINE Alu -10 302 1 342 367 25 29 chr3_random 64932 65177 -8363104 - MIR SINE MIR -12 250 7 377 264 31 16 chr3_random 65195 65324 -8362957 + MIR SINE MIR 113 243 -19 266 261 10 68 chr3_random 65587 65725 -8362556 + L1MC2 LINE L1 5696 5824 -297 2211 97 0 10 chr3_random 65984 66274 -8362007 + AluSx SINE Alu 4 290 -22 182 307 51 58 chr3_random 67526 67663 -8360618 + MIR SINE MIR 53 188 -74 645 248 108 5 chr3_random 67709 67923 -8360358 + MIR SINE MIR 12 247 -15 34 42 0 0 chr3_random 70239 70287 -8357994 + AT_rich Low_complexity Low_complexity 1 48 0 3927 161 25 4 chr3_random 70522 71237 -8357044 - L1MB4 LINE L1 0 6180 5451 641 280 30 43 chr3_random 71428 71660 -8356621 + MIR SINE MIR 7 235 -27 196 198 20 139 chr3_random 71725 71773 -8356508 + MER5B DNA MER1_type 70 101 -77 1932 161 0 3 chr3_random 71773 72064 -8356217 - AluSx SINE Alu -22 290 1 196 198 20 139 chr3_random 72064 72116 -8356165 + MER5B DNA MER1_type 101 158 -20 441 233 195 50 chr3_random 73372 73430 -8354851 - L2 LINE L2 0 3313 3265 2456 156 84 6 chr3_random 73430 73905 -8354376 + L1MC2 LINE L1 5833 6344 0 441 233 195 50 chr3_random 73905 74189 -8354092 - L2 LINE L2 -48 3265 2921 391 289 145 13 chr3_random 76023 76182 -8352099 - MER5A DNA MER1_type 0 189 10 1342 69 123 5 chr3_random 76229 76433 -8351848 - MER30 DNA MER1_type -2 228 1 415 305 16 0 chr3_random 76464 76592 -8351689 + MIR SINE MIR 79 208 -54 476 205 5 142 chr3_random 76607 76797 -8351484 - MLT1K LTR MaLR -15 573 410 201 300 0 14 chr3_random 76798 76868 -8351413 + CT-rich Low_complexity Low_complexity 2 70 0 443 306 23 6 chr3_random 77255 77428 -8350853 + MIR3 SINE MIR 32 207 -1 2510 79 0 0 chr3_random 77570 77873 -8350408 - AluY SINE Alu -8 303 1 1916 150 0 58 chr3_random 78392 78719 -8349562 - AluJb SINE Alu -4 308 1 185 295 161 40 chr3_random 79052 79240 -8349041 + L2 LINE L2 2508 2672 -642 2419 96 48 25 chr3_random 79240 79596 -8348685 + THE1B LTR MaLR 1 364 0 185 295 161 40 chr3_random 79596 79736 -8348545 + L2 LINE L2 2672 2876 -438 261 338 14 0 chr3_random 80044 80183 -8348098 + MIR SINE MIR 122 262 0 441 264 9 0 chr3_random 80203 80309 -8347972 + L2 LINE L2 3207 3313 0 270 136 0 0 chr3_random 80718 80762 -8347519 + (A)n Simple_repeat Simple_repeat 1 44 0 462 214 68 0 chr3_random 81002 81119 -8347162 - MIR3 SINE MIR -2 206 82 389 312 230 19 chr3_random 81155 81533 -8346748 - L2 LINE L2 -1 3312 2855 397 290 137 0 chr3_random 81836 82019 -8346262 + MIR SINE MIR 2 209 -53 214 205 0 0 chr3_random 82639 82678 -8345603 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1055 208 43 65 chr3_random 82707 82925 -8345356 + MER33 DNA MER1_type 7 217 -2368 2389 76 0 3 chr3_random 82925 83214 -8345067 - AluY SINE Alu -23 288 1 1055 208 43 65 chr3_random 83214 83317 -8344964 + MER33 DNA MER1_type 217 321 -3 2022 152 7 0 chr3_random 83350 83660 -8344621 - AluSx SINE Alu 0 312 1 293 241 12 0 chr3_random 83661 83744 -8344537 - MIR SINE MIR -59 203 120 291 212 0 61 chr3_random 84050 84116 -8344165 - MER112 DNA MER1_type -6 254 193 506 107 0 13 chr3_random 84235 84310 -8343971 + FLAM_C SINE Alu 37 110 -33 358 209 326 8 chr3_random 84414 84543 -8343738 + MLT1L LTR MaLR 30 199 -416 769 212 140 21 chr3_random 84543 84736 -8343545 + MER20 DNA MER1_type 1 216 -3 530 235 27 104 chr3_random 84737 84958 -8343323 + MLT1J LTR MaLR 127 330 -181 418 264 50 7 chr3_random 84956 85096 -8343185 + MLT1L LTR MaLR 470 615 0 * 531 280 88 10 chr3_random 85347 85463 -8342818 + MIR SINE MIR 34 140 -122 2559 76 14 49 chr3_random 85463 85503 -8342778 + THE1A LTR MaLR 1 41 -314 1911 136 3 44 chr3_random 85503 85820 -8342461 - AluSq SINE Alu -9 304 1 2559 76 14 49 chr3_random 85820 86147 -8342134 + THE1A LTR MaLR 41 355 0 11460 92 26 1 chr3_random 86147 87688 -8340593 + THE1A-int LTR MaLR 1 1580 0 2729 81 3 14 chr3_random 87688 88047 -8340234 + THE1A LTR MaLR 1 355 0 531 280 88 10 chr3_random 88047 88121 -8340160 + MIR SINE MIR 139 241 -21 846 169 0 0 chr3_random 88205 88329 -8339952 - FLAM_C SINE Alu -19 124 1 1394 120 0 0 chr3_random 88966 89157 -8339124 - AluSg/x SINE Alu -9 303 113 250 219 0 0 chr3_random 89160 89201 -8339080 - AluJ/monomer SINE Alu -262 41 1 1873 156 3 41 chr3_random 89940 90254 -8338027 - AluJb SINE Alu 0 312 11 393 260 104 7 chr3_random 90327 90481 -8337800 - MIR SINE MIR -2 260 92 1953 136 26 32 chr3_random 90521 90830 -8337451 - AluSx SINE Alu -5 307 1 191 161 0 0 chr3_random 90997 91028 -8337253 + MIR3 SINE MIR 151 181 -27 1712 214 74 61 chr3_random 91637 91817 -8336464 - L1ME3A LINE L1 -1 6169 5993 2369 82 3 28 chr3_random 91817 92134 -8336147 - AluSg SINE Alu -1 309 1 1712 214 74 61 chr3_random 92134 92494 -8335787 - L1ME3A LINE L1 -177 5993 5622 184 258 0 61 chr3_random 92494 92560 -8335721 - MER5A DNA MER1_type -113 76 15 1437 168 35 51 chr3_random 92861 93177 -8335104 - AluJb SINE Alu 0 312 2 720 234 43 81 chr3_random 93185 93420 -8334861 + MER102a DNA MER1_type 95 320 -10 255 275 60 54 chr3_random 93447 93596 -8334685 - MIR SINE MIR -46 216 67 194 250 73 15 chr3_random 95307 95375 -8332906 + MIR SINE MIR 71 142 -120 205 227 0 0 chr3_random 95384 95428 -8332853 - MIR SINE MIR -63 145 102 330 317 10 0 chr3_random 95792 95893 -8332388 + MER5A DNA MER1_type 9 110 -79 1835 80 47 18 chr3_random 98427 98701 -8329580 + L1MA2 LINE L1 6017 6298 -6 520 180 24 108 chr3_random 98724 98911 -8329370 - L1MB7 LINE L1 -30 6148 5966 2041 119 3 0 chr3_random 99079 99381 -8328900 + AluSq SINE Alu 1 303 -10 365 219 94 109 chr3_random 100790 100982 -8327299 - L1MC4 LINE L1 -1320 6722 6534 621 214 49 55 chr3_random 101050 101227 -8327054 - MER5A DNA MER1_type -10 168 2 323 294 92 68 chr3_random 102079 102242 -8326039 - L2 LINE L2 -92 3180 3014 1083 60 0 0 chr3_random 102685 102819 -8325462 + L1PA10 LINE L1 6031 6164 -4 374 204 214 10 chr3_random 102881 102984 -8325297 + MIR SINE MIR 12 135 -127 * 905 181 13 0 chr3_random 102977 103132 -8325149 - MER5A DNA MER1_type -32 157 1 534 246 91 18 chr3_random 104164 104384 -8323897 - MER112 DNA MER1_type -14 246 11 284 267 158 119 chr3_random 104386 104697 -8323584 + L2 LINE L2 2943 3265 -7 533 42 0 158 chr3_random 105290 105346 -8322935 - MADE1 DNA Mariner 0 80 43 1968 138 3 0 chr3_random 105346 105643 -8322638 + AluSx SINE Alu 1 298 -14 533 42 0 158 chr3_random 105643 105681 -8322600 - MADE1 DNA Mariner -37 43 1 273 224 82 0 chr3_random 105715 105813 -8322468 + L1ME4a LINE L1 5976 6081 -40 270 0 0 0 chr3_random 106201 106231 -8322050 + (TTA)n Simple_repeat Simple_repeat 2 31 0 701 174 0 0 chr3_random 106233 106342 -8321939 - FLAM_C SINE Alu -24 119 11 310 286 165 44 chr3_random 106908 107114 -8321167 - L2 LINE L2 -38 3234 3004 189 239 11 98 chr3_random 107226 107318 -8320963 - L2 LINE L2 -461 2853 2770 342 182 91 47 chr3_random 107373 107527 -8320754 - Charlie8 DNA MER1_type -2132 285 58 5167 111 36 1 chr3_random 107638 108644 -8319637 + L1PA10 LINE L1 5001 6032 -136 391 302 0 41 chr3_random 108807 108954 -8319327 + MIR SINE MIR 31 170 -62 2220 85 0 0 chr3_random 109075 109368 -8318913 - AluY SINE Alu -18 293 1 213 238 0 0 chr3_random 109640 109682 -8318599 + L2 LINE L2 2931 2972 -342 286 234 39 13 chr3_random 109711 109788 -8318493 - Charlie1 DNA MER1_type -2664 97 19 2365 72 3 0 chr3_random 109867 110172 -8318109 - AluSg SINE Alu -4 306 1 1657 187 0 9 chr3_random 110285 110600 -8317681 + AluJo SINE Alu 1 312 0 248 222 34 102 chr3_random 110711 110887 -8317394 - L1MC5 LINE L1 -195 7766 7603 360 77 0 0 chr3_random 111004 111056 -8317225 + (CA)n Simple_repeat Simple_repeat 1 52 0 237 174 0 0 chr3_random 111277 111323 -8316958 - MIR SINE MIR -57 205 160 2923 100 21 21 chr3_random 111325 111755 -8316526 + MER83 LTR ERV1 1 430 -18 381 233 15 0 chr3_random 111767 111858 -8316423 - MIR SINE MIR -63 145 56 261 234 0 0 chr3_random 112102 112166 -8316115 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 2668 200 77 9 chr3_random 112168 112713 -8315568 - MER82 DNA MER2_type -59 594 13 1510 185 9 69 chr3_random 114150 114241 -8314040 - L1MC/D LINE L1 -743 5403 5308 2218 113 0 0 chr3_random 114241 114551 -8313730 - AluSx SINE Alu -2 310 1 1510 185 9 69 chr3_random 114551 115066 -8313215 - L1MC/D LINE L1 -838 5308 4999 182 288 175 25 chr3_random 115723 115803 -8312478 + MIR SINE MIR 24 115 -147 840 264 45 16 chr3_random 116302 116548 -8311733 + MIR SINE MIR 2 254 -8 190 0 67 0 chr3_random 118821 118851 -8309430 + (TTG)n Simple_repeat Simple_repeat 2 33 0 452 298 0 24 chr3_random 118923 119047 -8309234 - L2 LINE L2 -1 3312 3192 180 0 0 0 chr3_random 119085 119105 -8309176 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2343 155 88 18 chr3_random 119106 119203 -8309078 - L1MC2 LINE L1 -9 6335 6246 210 37 0 0 chr3_random 119203 119230 -8309051 + (CA)n Simple_repeat Simple_repeat 1 27 0 2343 155 88 18 chr3_random 119230 119577 -8308704 - L1MC2 LINE L1 -98 6246 5860 1069 293 37 37 chr3_random 120791 121255 -8307026 + L1ME3A LINE L1 5584 6047 -123 708 160 8 16 chr3_random 121367 121492 -8306789 - FLAM_C SINE Alu -18 125 2 241 61 0 0 chr3_random 122423 122456 -8305825 + MER117 DNA MER1_type 126 158 -39 1262 183 14 5 chr3_random 122629 122848 -8305433 + MER58A DNA MER1_type 4 224 0 480 236 25 68 chr3_random 123824 123947 -8304334 + MIR SINE MIR 26 142 -120 2264 145 19 6 chr3_random 123947 124306 -8303975 - MER47A DNA MER2_type -1 365 2 480 236 25 68 chr3_random 124306 124343 -8303938 + MIR SINE MIR 142 179 -83 206 206 159 0 chr3_random 125195 125258 -8303023 - MIR SINE MIR -146 116 44 212 250 135 58 chr3_random 125321 125415 -8302866 - L2 LINE L2 -503 2811 2707 2222 95 3 3 chr3_random 125415 125721 -8302560 - AluSp SINE Alu -7 306 1 4224 170 50 37 chr3_random 125730 125882 -8302399 - L1MB2 LINE L1 -2 6169 6020 2256 127 14 32 chr3_random 125882 126253 -8302028 + THE1B LTR MaLR 1 364 0 11755 74 27 22 chr3_random 126253 127825 -8300456 + THE1B-int LTR MaLR 1 1580 0 2452 120 14 25 chr3_random 127825 128193 -8300088 + THE1B LTR MaLR 1 364 0 4224 170 50 37 chr3_random 128193 128991 -8299290 - L1MB2 LINE L1 -150 6021 5207 393 185 43 11 chr3_random 129002 129094 -8299187 - L2 LINE L2 -600 2714 2620 2184 99 3 13 chr3_random 130617 130929 -8297352 + AluSc SINE Alu 1 309 0 187 156 0 0 chr3_random 131059 131091 -8297190 - MIR SINE MIR -117 145 114 186 103 0 0 chr3_random 131200 131229 -8297052 + (T)n Simple_repeat Simple_repeat 1 29 0 256 224 26 13 chr3_random 133214 133290 -8294991 - L1ME2 LINE L1 0 6164 6088 2172 88 10 0 chr3_random 134588 134893 -8293388 - AluY SINE Alu -3 308 1 286 328 0 0 chr3_random 137988 138055 -8290226 - MIR SINE MIR -165 97 31 413 276 12 59 chr3_random 138070 138240 -8290041 + MIR SINE MIR 7 168 -94 688 167 30 23 chr3_random 138318 138450 -8289831 - FLAM_C SINE Alu 0 133 1 328 241 72 90 chr3_random 140148 140314 -8287967 - L1MC5 LINE L1 -68 7893 7731 278 135 0 0 chr3_random 140322 140374 -8287907 - L1MB7 LINE L1 0 6184 6133 482 205 223 6 chr3_random 142176 142342 -8285939 + MIR3 SINE MIR 2 203 -5 294 29 0 0 chr3_random 142452 142487 -8285794 + (CA)n Simple_repeat Simple_repeat 2 36 0 1740 164 7 0 chr3_random 142488 142763 -8285518 - AluJb SINE Alu -35 277 1 1817 126 0 48 chr3_random 143356 143665 -8284616 - AluSx SINE Alu -18 294 1 180 77 0 0 chr3_random 143982 144008 -8284273 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 201 74 0 0 chr3_random 144393 144420 -8283861 + (TG)n Simple_repeat Simple_repeat 2 28 0 476 263 134 17 chr3_random 145645 145824 -8282457 + MIR SINE MIR 62 261 -1 212 341 222 0 chr3_random 145874 146000 -8282281 - MIR SINE MIR -58 204 51 1799 160 10 13 chr3_random 146828 147134 -8281147 - AluJb SINE Alu -7 305 1 409 384 68 20 chr3_random 147420 147714 -8280567 + L2 LINE L2 2939 3246 -26 974 146 11 96 chr3_random 149306 149547 -8278734 - Charlie5 DNA MER1_type 0 2585 2370 2114 98 0 29 chr3_random 149547 149863 -8278418 + AluSx SINE Alu 1 307 -5 974 146 11 96 chr3_random 149863 149901 -8278380 - Charlie5 DNA MER1_type -215 2370 2330 266 171 157 0 chr3_random 149998 150068 -8278213 - MER3 DNA MER1_type 0 2616 2536 394 234 0 0 chr3_random 150068 150145 -8278136 - MER3 DNA MER1_type -97 112 36 977 165 6 16 chr3_random 150233 150415 -8277866 + AluJo SINE Alu 54 233 -79 1056 187 12 25 chr3_random 150416 150657 -8277624 + L1MB8 LINE L1 5941 6178 0 5753 135 35 25 chr3_random 150773 151910 -8276371 + pTR5 LTR ERV1 741 2030 -408 336 211 40 0 chr3_random 151911 151987 -8276294 + LTR30 LTR ERV1 550 628 -94 1606 85 0 9 chr3_random 151996 152219 -8276062 + pTR5 LTR ERV1 172 392 -2046 456 267 19 68 chr3_random 152302 152463 -8275818 - L2 LINE L2 0 3313 3161 5628 150 20 49 chr3_random 152466 153345 -8274936 + L1MA9 LINE L1 5081 5922 -390 1574 151 39 59 chr3_random 153345 153650 -8274631 + AluJo SINE Alu 1 299 -13 5628 150 20 49 chr3_random 153650 154031 -8274250 + L1MA9 LINE L1 5922 6312 0 240 203 49 140 chr3_random 154033 154176 -8274105 - L2 LINE L2 -161 3152 3023 360 193 24 10 chr3_random 154334 154413 -8273868 + MLT1B LTR MaLR 1 83 -291 22 35 0 0 chr3_random 155057 155086 -8273195 + AT_rich Low_complexity Low_complexity 1 29 0 302 276 40 137 chr3_random 155339 155784 -8272497 - L1M4 LINE L1 -2718 3428 3027 1478 158 23 4 chr3_random 155816 156104 -8272177 - AluJb SINE Alu 0 306 14 672 13 0 0 chr3_random 156141 156218 -8272063 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1443 187 13 36 chr3_random 156245 156550 -8271731 - AluJo SINE Alu -14 298 1 207 170 43 0 chr3_random 156750 156797 -8271484 + T-rich Low_complexity Low_complexity 3 51 0 294 29 0 0 chr3_random 157280 157315 -8270966 + (TCC)n Simple_repeat Simple_repeat 2 36 0 445 332 20 20 chr3_random 157717 157919 -8270362 - MIR SINE MIR 0 262 61 537 288 149 5 chr3_random 158828 159043 -8269238 + MIR SINE MIR 9 254 -8 440 158 71 185 chr3_random 159422 159606 -8268675 + MER5B DNA MER1_type 1 163 -15 334 308 25 33 chr3_random 161184 161304 -8266977 + MIR SINE MIR 30 148 -60 313 266 64 9 chr3_random 162749 162858 -8265423 + MER103 DNA DNA 2 116 -50 498 323 47 47 chr3_random 163531 163831 -8264450 - L1M4 LINE L1 -3644 2502 2203 860 246 130 28 chr3_random 164285 164647 -8263634 - L2 LINE L2 0 3313 2915 533 179 26 5 chr3_random 165194 165384 -8262897 - Zaphod DNA AcHobo -3088 943 750 * 575 228 65 57 chr3_random 165357 165620 -8262661 + Zaphod DNA AcHobo 2829 3093 -938 1345 181 95 41 chr3_random 165624 165874 -8262407 - L1M4 LINE L1 -609 5575 5340 2253 80 0 3 chr3_random 165874 166173 -8262108 - AluY SINE Alu -13 298 1 1345 181 95 41 chr3_random 166173 166385 -8261896 - L1M4 LINE L1 -844 5340 5091 301 240 67 48 chr3_random 166793 166897 -8261384 + MIR SINE MIR 18 123 -139 1241 80 11 11 chr3_random 167081 167256 -8261025 - AluSq SINE Alu -16 297 123 567 231 159 11 chr3_random 167415 167573 -8260708 + MER5A DNA MER1_type 4 188 -1 715 167 0 8 chr3_random 168468 168588 -8259693 + AluJb SINE Alu 6 124 -188 468 69 0 14 chr3_random 168593 168665 -8259616 - AluY SINE Alu 0 312 242 1157 96 0 18 chr3_random 168668 168835 -8259446 - AluY SINE Alu -147 164 1 22 0 0 0 chr3_random 168835 168857 -8259424 + AT_rich Low_complexity Low_complexity 1 22 0 2013 138 0 0 chr3_random 168864 169168 -8259113 + AluJb SINE Alu 1 304 -8 799 191 70 0 chr3_random 169168 169325 -8258956 + AluJo/FRAM SINE Alu 134 301 -11 1148 130 29 10 chr3_random 169462 169670 -8258611 - L1MB7 LINE L1 -16 6168 5957 2676 203 6 15 chr3_random 169778 170315 -8257966 - MER74A LTR ERVL -26 532 1 381 155 7 16 chr3_random 170505 170581 -8257700 - AluJ/FLAM SINE Alu -245 57 2 472 291 14 47 chr3_random 170672 170820 -8257461 - MIR3 SINE MIR -48 160 18 1869 92 9 79 chr3_random 171168 171496 -8256785 + AluSx SINE Alu 1 305 -7 453 233 11 0 chr3_random 171769 171880 -8256401 - MIR SINE MIR -60 148 56 214 274 0 0 chr3_random 173283 173334 -8254947 + (TG)n Simple_repeat Simple_repeat 2 52 0 333 244 112 122 chr3_random 176287 176458 -8251823 - MIR SINE MIR -56 152 17 263 214 112 0 chr3_random 177445 177534 -8250747 + MER5A DNA MER1_type 47 145 -44 210 244 0 0 chr3_random 177947 177992 -8250289 + L2 LINE L2 3223 3267 -5 232 176 49 98 chr3_random 179979 180081 -8248200 - L1M3e LINE L1 -6125 905 809 259 245 39 59 chr3_random 180407 180509 -8247772 + MER5A DNA MER1_type 88 187 -2 1826 148 17 0 chr3_random 181141 181438 -8246843 - AluJb SINE Alu -10 302 1 740 286 58 0 chr3_random 182904 183093 -8245188 - MER58A DNA MER1_type -23 201 2 465 275 148 22 chr3_random 184587 184816 -8243465 + MIR SINE MIR 5 262 0 325 284 35 43 chr3_random 184940 185056 -8243225 + MIR3 SINE MIR 54 168 -40 2020 125 0 13 chr3_random 185106 185451 -8242830 - AluSg SINE Alu 0 310 3 1667 174 0 16 chr3_random 185483 185787 -8242494 + AluJb SINE Alu 1 299 -13 291 301 44 18 chr3_random 185792 185905 -8242376 - MLT1L LTR MaLR -76 539 424 457 248 148 68 chr3_random 186071 186196 -8242085 - MLT1L LTR MaLR -314 301 187 772 231 62 19 chr3_random 186196 186404 -8241877 - MER20 DNA MER1_type -1 218 2 457 248 148 68 chr3_random 186404 186528 -8241753 - MLT1L LTR MaLR -428 187 32 439 189 11 21 chr3_random 186846 186941 -8241340 - Charlie4 DNA MER1_type -9 1952 1859 1764 166 0 25 chr3_random 187080 187394 -8240887 - AluSx SINE Alu -2 310 5 944 245 14 5 chr3_random 187690 187906 -8240375 + MER58A DNA MER1_type 3 220 -4 1420 255 26 22 chr3_random 187934 188214 -8240067 + Charlie4a DNA MER1_type 38 322 -1639 1783 126 52 11 chr3_random 188214 188500 -8239781 + AluJb SINE Alu 1 298 -14 1420 255 26 22 chr3_random 188500 188682 -8239599 + Charlie4a DNA MER1_type 322 502 -6 43 56 0 0 chr3_random 188773 188844 -8239437 + AT_rich Low_complexity Low_complexity 1 71 0 289 267 17 42 chr3_random 188852 188972 -8239309 - L1ME LINE L1 -431 5690 5574 1261 165 85 4 chr3_random 188972 189228 -8239053 - AluJb SINE Alu 0 301 27 186 189 0 0 chr3_random 189244 189281 -8239000 + (ATG)n Simple_repeat Simple_repeat 2 38 0 455 219 151 0 chr3_random 189290 189409 -8238872 - MIR SINE MIR -22 240 104 2205 103 0 0 chr3_random 189416 189743 -8238538 + AluY SINE Alu 2 311 0 2434 176 49 48 chr3_random 189849 190181 -8238100 + L1MD1 LINE L1 5655 5990 -252 1806 139 0 63 chr3_random 190181 190498 -8237783 + AluSx SINE Alu 1 297 -15 2434 176 49 48 chr3_random 190498 190734 -8237547 + L1MD1 LINE L1 5990 6224 -18 406 254 23 31 chr3_random 191359 191489 -8236792 + MIR SINE MIR 72 200 -62 256 329 133 16 chr3_random 192324 192691 -8235590 + L2 LINE L2 2597 3009 -263 2151 83 0 0 chr3_random 592837 593114 -7835167 + AluSc SINE Alu 25 301 -8 526 301 163 42 chr3_random 593277 593508 -7834773 + MLT1L LTR MaLR 18 220 -395 1394 200 54 64 chr3_random 593508 593898 -7834383 + MLT1B LTR MaLR 5 390 0 526 301 163 42 chr3_random 593898 594095 -7834186 + MLT1L LTR MaLR 220 498 -117 319 328 186 6 chr3_random 594782 594959 -7833322 - MIR SINE MIR -36 226 18 309 327 84 65 chr3_random 595271 595699 -7832582 + MLT1K LTR MaLR 151 586 -2 230 222 0 0 chr3_random 595807 595852 -7832429 + MLT1K-int LTR MaLR 201 245 -1490 787 217 94 102 chr3_random 595852 596225 -7832056 - MLT1A2 LTR MaLR 0 374 5 410 162 0 0 chr3_random 596228 596296 -7831985 + MLT1A2 LTR MaLR 303 370 -4 501 265 0 7 chr3_random 596304 596440 -7831841 + L1MD2 LINE L1 2701 2835 -3311 301 242 54 81 chr3_random 596440 596589 -7831692 + L1MD2 LINE L1 3157 3301 -2845 886 221 0 11 chr3_random 596649 596830 -7831451 + FRAM SINE Alu 1 176 0 2080 251 35 18 chr3_random 596866 597518 -7830763 + L1MD2 LINE L1 3519 4181 -1965 240 35 0 0 chr3_random 597879 597908 -7830373 + (CA)n Simple_repeat Simple_repeat 2 30 0 427 303 131 23 chr3_random 597935 598110 -7830171 + L2 LINE L2 2246 2439 -875 3703 142 22 68 chr3_random 599598 600319 -7827962 + LTR8 LTR ERV1 1 688 -3 233 204 0 0 chr3_random 600324 600368 -7827913 + MLT1B LTR MaLR 1 44 -346 1671 229 30 48 chr3_random 600487 601093 -7827188 + L1MD2 LINE L1 4462 5056 -1090 * 15871 35 2 7 chr3_random 601089 603062 -7825219 - L1P LINE L1 -1862 4284 2322 8267 36 0 0 chr3_random 603062 604818 -7823463 + L1PA4 LINE L1 4392 6147 -8 2573 197 24 14 chr3_random 604829 605556 -7822725 + L1MD2 LINE L1 5040 5775 -584 243 225 50 0 chr3_random 605543 605623 -7822658 + L1MC4 LINE L1 6620 6703 -1339 * 279 79 0 0 chr3_random 605623 605661 -7822620 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 333 296 23 0 chr3_random 605665 605753 -7822528 + L1MC4 LINE L1 6614 6703 -1339 327 311 0 0 chr3_random 605709 605799 -7822482 - L1MC4 LINE L1 -1339 6703 6614 * 1730 362 45 11 chr3_random 605805 606360 -7821921 + L1MD2 LINE L1 5783 6356 -3 743 242 71 38 chr3_random 607997 608048 -7820233 - MIR SINE MIR -15 247 199 1640 183 33 48 chr3_random 608048 608441 -7819840 + MLT1B LTR MaLR 1 387 -3 743 242 71 38 chr3_random 608441 608600 -7819681 - MIR SINE MIR -63 199 30 2080 117 0 3 chr3_random 608790 609072 -7819209 + AluSq SINE Alu 1 281 -32 1064 29 35 24 chr3_random 609072 609242 -7819039 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 762 235 53 6 chr3_random 611615 611785 -7816496 + MER45A DNA AcHobo 1 178 0 23 54 0 0 chr3_random 612122 612159 -7816122 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3_random 612788 612813 -7815468 + AT_rich Low_complexity Low_complexity 1 25 0 2183 111 7 7 chr3_random 613932 614239 -7814042 - AluSx SINE Alu 0 312 6 21 57 0 0 chr3_random 614352 614387 -7813894 + AT_rich Low_complexity Low_complexity 1 35 0 229 282 35 24 chr3_random 614423 614508 -7813773 + L3b LINE CR1 1291 1376 -207 274 306 19 9 chr3_random 615029 615137 -7813144 - L2 LINE L2 -1358 1956 1848 227 344 76 38 chr3_random 615227 615358 -7812923 + MIR3 SINE MIR 5 140 -68 291 274 16 11 chr3_random 616662 616755 -7811526 - MIR SINE MIR -61 147 61 326 265 218 24 chr3_random 617751 617921 -7810360 + MIR SINE MIR 10 212 -50 4302 166 49 14 chr3_random 619243 620762 -7807519 + L1MA7 LINE L1 4628 6195 -96 2075 231 94 83 chr3_random 620755 621020 -7807261 + L1M4 LINE L1 3782 4043 -2103 * 1202 161 58 9 chr3_random 621020 621244 -7807037 - MER46A DNA MER2_type -1 235 1 2075 231 94 83 chr3_random 621244 622131 -7806150 + L1M4 LINE L1 4043 4947 -1199 297 0 0 0 chr3_random 622159 622192 -7806089 + (TG)n Simple_repeat Simple_repeat 1 33 0 234 267 0 27 chr3_random 623388 623463 -7804818 + MLT1K LTR MaLR 516 588 0 243 288 113 0 chr3_random 623511 623591 -7804690 - L2 LINE L2 -527 2787 2699 1137 261 47 44 chr3_random 624973 625419 -7802862 + MER39 LTR ERV1 67 707 0 22 0 0 0 chr3_random 627062 627084 -7801197 + AT_rich Low_complexity Low_complexity 1 22 0 209 256 47 47 chr3_random 627380 627466 -7800815 - MIR SINE MIR -84 178 93 824 233 9 21 chr3_random 627543 627731 -7800550 + MIR SINE MIR 62 247 -15 314 231 125 29 chr3_random 627724 627828 -7800453 - L2 LINE L2 -10 3303 3190 * 1837 174 19 30 chr3_random 628178 628545 -7799736 + MLT1A1 LTR MaLR 1 363 -2 308 306 24 0 chr3_random 628596 628720 -7799561 + GA-rich Low_complexity Low_complexity 2 128 0 353 65 0 0 chr3_random 628737 628783 -7799498 - Alu SINE Alu -253 46 1 * 450 258 0 0 chr3_random 628783 628875 -7799406 + MLT1A1 LTR MaLR 34 125 -303 771 191 43 12 chr3_random 628988 629150 -7799131 + MLT1A1 LTR MaLR 199 365 0 25 0 0 0 chr3_random 629305 629330 -7798951 + AT_rich Low_complexity Low_complexity 1 25 0 266 65 0 22 chr3_random 629538 629584 -7798697 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 0 0 0 chr3_random 629672 629700 -7798581 + (TG)n Simple_repeat Simple_repeat 2 29 0 1343 238 58 16 chr3_random 630457 630835 -7797446 + MSTD LTR MaLR 1 394 -2 24 32 0 0 chr3_random 630971 631002 -7797279 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3_random 632488 632516 -7795765 + AT_rich Low_complexity Low_complexity 1 28 0 1470 244 81 21 chr3_random 632639 633123 -7795158 + L1MC4a LINE L1 5392 5904 -1904 27 49 0 0 chr3_random 633261 633302 -7794979 + AT_rich Low_complexity Low_complexity 1 41 0 2386 64 0 0 chr3_random 633302 633599 -7794682 + AluY SINE Alu 1 297 -14 24 96 0 0 chr3_random 633742 633815 -7794466 + AT_rich Low_complexity Low_complexity 1 73 0 234 227 45 64 chr3_random 633844 633954 -7794327 + L1MC4a LINE L1 6401 6508 -1300 5646 209 37 0 chr3_random 634465 635765 -7792516 + L1MA5 LINE L1 2201 3548 -2598 6750 162 40 20 chr3_random 635839 638230 -7790051 + L1MA5 LINE L1 3860 6300 0 21 36 0 0 chr3_random 640163 640191 -7788090 + AT_rich Low_complexity Low_complexity 1 28 0 213 269 0 19 chr3_random 640677 640729 -7787552 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 443 352 84 15 chr3_random 640809 641082 -7787199 - L3 LINE CR1 -9 1568 1277 230 315 23 31 chr3_random 641096 641226 -7787055 + T-rich Low_complexity Low_complexity 4 132 0 606 258 73 0 chr3_random 641896 642074 -7786207 + MLT1D LTR MaLR 1 191 -314 2534 183 6 16 chr3_random 642074 642874 -7785407 - L1MA6 LINE L1 -682 5618 4825 2242 170 29 0 chr3_random 642872 643283 -7784998 + L1MA6 LINE L1 5622 6044 -256 * 229 230 56 16 chr3_random 646153 646279 -7782002 + (TA)n Simple_repeat Simple_repeat 2 132 0 27 62 0 0 chr3_random 647234 647282 -7780999 + AT_rich Low_complexity Low_complexity 1 48 0 1930 170 125 8 chr3_random 648576 648959 -7779322 + MSTA LTR MaLR 1 428 0 8325 178 8 63 chr3_random 648961 650631 -7777650 + MSTA-int LTR MaLR 3 1580 0 1783 166 118 40 chr3_random 650631 651028 -7777253 + MSTA LTR MaLR 1 428 0 779 241 14 38 chr3_random 651525 651737 -7776544 - MER63A DNA MER1_type -3 207 1 268 178 0 0 chr3_random 651824 651869 -7776412 + MER103 DNA DNA 3 47 -119 264 386 0 0 chr3_random 652227 652315 -7775966 + MIR SINE MIR 2 89 -173 227 319 84 96 chr3_random 652784 653213 -7775068 - L2 LINE L2 -652 2662 2239 284 285 122 0 chr3_random 654425 654548 -7773733 - LTR16C LTR ERVL -9 482 345 180 0 0 0 chr3_random 654733 654753 -7773528 + (A)n Simple_repeat Simple_repeat 1 20 0 6333 80 21 0 chr3_random 655164 656707 -7771574 - L1PA10 LINE L1 -5 6163 4584 3421 111 0 2 chr3_random 656714 657209 -7771072 + L1PA10 LINE L1 4064 4557 -1589 600 154 12 154 chr3_random 657484 657653 -7770628 + MLT2B3 LTR ERVL 410 554 0 37 0 0 0 chr3_random 658532 658569 -7769712 + AT_rich Low_complexity Low_complexity 1 37 0 736 275 55 17 chr3_random 659416 659652 -7768629 + MIR SINE MIR 13 257 -5 385 91 13 13 chr3_random 661786 661863 -7766418 + (CA)n Simple_repeat Simple_repeat 2 78 0 2170 123 0 3 chr3_random 662987 663288 -7764993 + AluSc SINE Alu 3 302 -7 181 129 0 0 chr3_random 663293 663324 -7764957 - L3 LINE CR1 -912 665 635 10696 212 47 90 chr3_random 663625 666808 -7761473 + L1M2 LINE L1 1 3044 -3804 3262 216 153 32 chr3_random 666812 668098 -7760183 + MER52A LTR ERV1 12 1105 -184 829 207 37 49 chr3_random 668080 668377 -7759904 + MER52A LTR ERV1 908 1111 -167 * 4280 188 29 44 chr3_random 668389 669311 -7758970 + MER52A LTR ERV1 882 1755 0 769 157 66 0 chr3_random 669311 669477 -7758804 + L1M2 LINE L1 3040 3216 -3632 519 249 11 6 chr3_random 669468 669645 -7758636 + L1M2 LINE L1 1942 2119 -4730 * 2734 233 80 21 chr3_random 669656 670586 -7757695 + L1M2 LINE L1 3225 4208 -2640 496 290 43 0 chr3_random 670591 670753 -7757528 + L1M2 LINE L1 3243 3411 -3437 577 292 73 26 chr3_random 672432 672665 -7755616 + MIR SINE MIR 4 247 -15 2249 123 0 0 chr3_random 674180 674489 -7753792 - AluSg SINE Alu -1 309 1 1611 146 115 9 chr3_random 674627 674948 -7753333 - THE1A LTR MaLR 0 355 1 11116 104 12 1 chr3_random 674948 676510 -7751771 - THE1A-int LTR MaLR 0 1580 1 2120 106 62 18 chr3_random 676510 676850 -7751431 - THE1A LTR MaLR 0 355 1 318 219 0 0 chr3_random 677817 677899 -7750382 - L1PB4 LINE L1 -2 6154 6073 818 268 57 22 chr3_random 677917 678234 -7750047 - L1ME1 LINE L1 -51 6115 5788 299 289 36 0 chr3_random 678907 678990 -7749291 + L2 LINE L2 3215 3300 -13 430 97 222 0 chr3_random 679129 679201 -7749080 - L1PA16 LINE L1 -254 5912 5825 1281 140 11 96 chr3_random 679201 679472 -7748809 + L1PA16 LINE L1 5912 6159 -7 448 320 61 48 chr3_random 681303 681615 -7746666 - L1ME3A LINE L1 -312 5858 5543 6741 113 32 15 chr3_random 681636 682676 -7745605 - MER11C LTR ERVK -14 1057 1 530 320 4 47 chr3_random 683016 683250 -7745031 + MIR SINE MIR 33 256 -6 792 337 151 24 chr3_random 684391 685207 -7743074 + L2 LINE L2 2379 3313 0 485 244 0 0 chr3_random 686212 686343 -7741938 + L1PA16 LINE L1 3112 3242 -2904 5158 133 21 18 chr3_random 686344 688119 -7740162 + L1PA16 LINE L1 4357 6153 -13 207 100 0 0 chr3_random 688120 688150 -7740131 + (T)n Simple_repeat Simple_repeat 1 30 0 7392 160 33 79 chr3_random 688152 688708 -7739573 + L1MA4A LINE L1 3500 4080 -2223 657 67 0 0 chr3_random 688708 688833 -7739448 - AluY SINE Alu 0 317 193 7392 160 33 79 chr3_random 688833 690907 -7737374 + L1MA4A LINE L1 4080 6084 -219 1437 79 0 5 chr3_random 692437 692627 -7735654 - L1PA8 LINE L1 -15 6157 5969 22 56 0 0 chr3_random 692898 692934 -7735347 + AT_rich Low_complexity Low_complexity 1 36 0 888 123 7 32 chr3_random 693194 693348 -7734933 - L1PA8 LINE L1 0 6172 6023 1248 82 18 0 chr3_random 693449 693620 -7734661 - L1PA8 LINE L1 -547 5584 5411 606 241 21 14 chr3_random 694053 694198 -7734083 + MIR SINE MIR 106 251 -11 360 133 0 0 chr3_random 694616 694676 -7733605 + (CA)n Simple_repeat Simple_repeat 1 60 0 351 266 105 42 chr3_random 695261 695404 -7732877 - MIR3 SINE MIR -7 201 50 422 267 22 15 chr3_random 695493 695628 -7732653 - MIR SINE MIR -3 259 124 1894 157 7 3 chr3_random 695693 695993 -7732288 + AluSq SINE Alu 1 301 -12 25 65 0 0 chr3_random 696595 696641 -7731640 + AT_rich Low_complexity Low_complexity 1 46 0 391 271 47 0 chr3_random 697230 697337 -7730944 + MER70B LTR ERVL 459 570 -8 297 187 21 0 chr3_random 697769 697830 -7730451 + L1M1 LINE L1 5714 5780 -386 2781 145 34 32 chr3_random 697830 698327 -7729954 + MER7C DNA MER2_type 1 498 -104 2468 77 97 28 chr3_random 698327 698719 -7729562 + LTR7 LTR ERV1 1 419 -31 12088 101 12 19 chr3_random 698723 700569 -7727712 + HERVH LTR ERV1 1155 2987 -4726 935 139 6 47 chr3_random 700541 700713 -7727568 + HERVH LTR ERV1 3126 3290 -4423 * 3491 137 9 13 chr3_random 700703 701695 -7726586 + HERVH LTR ERV1 3492 4419 -2750 275 300 57 100 chr3_random 701826 702176 -7726105 - LTR33 LTR ERVL -28 493 159 829 280 45 12 chr3_random 702383 702628 -7725653 + MIR SINE MIR 1 250 -12 242 224 0 0 chr3_random 703179 703228 -7725053 + L2 LINE L2 3265 3313 0 2018 89 31 31 chr3_random 703842 704133 -7724148 + AluSc SINE Alu 1 291 -18 3213 178 8 2 chr3_random 705340 705951 -7722330 - L1MB3 LINE L1 -1 6182 5568 567 0 0 0 chr3_random 706291 706354 -7721927 + (TA)n Simple_repeat Simple_repeat 2 64 0 30 45 0 0 chr3_random 707035 707079 -7721202 + AT_rich Low_complexity Low_complexity 1 44 0 348 342 20 34 chr3_random 707403 707552 -7720729 + L2 LINE L2 3166 3312 -1 2348 143 40 24 chr3_random 707656 708076 -7720205 + MSTC LTR MaLR 1 427 -1 23 33 0 0 chr3_random 709050 709080 -7719201 + AT_rich Low_complexity Low_complexity 1 30 0 10636 159 53 36 chr3_random 709122 711423 -7716858 + L1M4c LINE L1 19 2357 -4027 392 152 0 15 chr3_random 711423 711489 -7716792 + Tigger2 DNA MER2_type 1 65 -2653 * 2574 157 25 2 chr3_random 711479 711918 -7716363 + Tigger2 DNA MER2_type 2269 2717 -1 2326 256 45 19 chr3_random 711920 712024 -7716257 + L1M4c LINE L1 2357 2457 -3925 1831 166 17 0 chr3_random 712024 712325 -7715956 + AluSx SINE Alu 1 306 -6 2326 256 45 19 chr3_random 712325 713063 -7715218 + L1M4c LINE L1 2457 3221 -3161 230 136 204 0 chr3_random 713063 713107 -7715174 - Charlie3 DNA MER1_type -4 2706 2654 1316 148 15 0 chr3_random 713207 713403 -7714878 - Charlie3 DNA MER1_type -2438 272 74 20534 151 39 18 chr3_random 713406 717192 -7711089 - L1 LINE L1 -3678 3887 19 326 257 38 9 chr3_random 717257 717362 -7710919 - L1ME LINE L1 -5063 1007 900 402 297 83 53 chr3_random 718571 718837 -7709444 + L3 LINE CR1 1279 1552 -25 467 325 22 67 chr3_random 719131 719488 -7708793 - MLT1L LTR MaLR -129 486 146 23 0 0 0 chr3_random 720217 720240 -7708041 + AT_rich Low_complexity Low_complexity 1 23 0 298 297 0 0 chr3_random 721487 721551 -7706730 - L2 LINE L2 -49 3223 3160 22 0 0 0 chr3_random 721690 721712 -7706569 + AT_rich Low_complexity Low_complexity 1 22 0 704 291 97 42 chr3_random 722155 722464 -7705817 + MLT1J LTR MaLR 78 403 -108 198 162 0 59 chr3_random 723962 724030 -7704251 + CT-rich Low_complexity Low_complexity 4 67 0 700 246 21 12 chr3_random 724070 724280 -7704001 + L1ME LINE L1 5376 5584 -581 1243 175 15 106 chr3_random 724280 724611 -7703670 - MLT1A1 LTR MaLR -64 301 1 3983 242 58 52 chr3_random 724612 725969 -7702312 - MLT1A1-int LTR MaLR -1 1370 5 830 241 25 10 chr3_random 725973 726172 -7702109 - MLT1A1 LTR MaLR 0 365 164 609 179 0 27 chr3_random 726296 726408 -7701873 + MER7C DNA MER2_type 494 602 0 324 0 0 0 chr3_random 726423 726459 -7701822 + (CA)n Simple_repeat Simple_repeat 2 37 0 1865 202 27 35 chr3_random 726461 726941 -7701340 + L1MA9 LINE L1 5793 6268 -44 2263 85 3 0 chr3_random 727103 727385 -7700896 + AluSx SINE Alu 5 287 -25 25 31 0 0 chr3_random 728530 728562 -7699719 + AT_rich Low_complexity Low_complexity 1 32 0 584 239 14 22 chr3_random 729055 729193 -7699088 + MER5B DNA MER1_type 33 169 -9 395 259 170 15 chr3_random 729225 729360 -7698921 + MER5A DNA MER1_type 31 186 -3 242 309 0 12 chr3_random 729453 729537 -7698744 + GA-rich Low_complexity Low_complexity 1 83 0 468 316 23 58 chr3_random 730435 730863 -7697418 + MLT1J LTR MaLR 62 509 -2 1105 207 5 24 chr3_random 732789 732907 -7695374 + MER58A DNA MER1_type 1 115 -2305 5789 186 101 96 chr3_random 732907 734652 -7693629 + MER52A LTR ERV1 2 1755 0 1105 207 5 24 chr3_random 734652 734746 -7693535 + MER58A DNA MER1_type 115 209 -15 22 88 0 0 chr3_random 735096 735153 -7693128 + AT_rich Low_complexity Low_complexity 1 57 0 31 0 0 0 chr3_random 735193 735224 -7693057 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr3_random 735287 735319 -7692962 + (TG)n Simple_repeat Simple_repeat 2 33 0 382 228 13 0 chr3_random 735392 735471 -7692810 - L2 LINE L2 0 3313 3234 671 318 58 17 chr3_random 735851 736218 -7692063 - L2 LINE L2 0 3313 2875 570 300 95 0 chr3_random 736800 737010 -7691271 + MIR SINE MIR 12 241 -21 2297 104 0 0 chr3_random 738615 738912 -7689369 + AluSx SINE Alu 1 297 -15 371 176 48 120 chr3_random 739087 739212 -7689069 - L2 LINE L2 -9 3304 3189 425 325 0 0 chr3_random 739898 740012 -7688269 - MIR3 SINE MIR -46 162 49 192 385 88 23 chr3_random 740021 740283 -7687998 + L3b LINE CR1 1281 1559 -24 347 89 18 0 chr3_random 740408 740464 -7687817 + (TG)n Simple_repeat Simple_repeat 2 58 0 274 300 0 0 chr3_random 740493 740563 -7687718 - L2 LINE L2 0 3272 3203 261 287 111 6 chr3_random 740713 740894 -7687387 - L1ME4a LINE L1 -84 6037 5838 245 286 135 63 chr3_random 740900 741361 -7686920 - L1ME4a LINE L1 -321 5800 5304 27 49 0 0 chr3_random 742482 742523 -7685758 + AT_rich Low_complexity Low_complexity 1 41 0 333 0 0 0 chr3_random 743534 743571 -7684710 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 0 0 49 chr3_random 744207 744228 -7684053 + AT_rich Low_complexity Low_complexity 1 21 -18 2195 113 0 0 chr3_random 744228 744539 -7683742 + AluY SINE Alu 1 311 0 26 0 0 49 chr3_random 744539 744558 -7683723 + AT_rich Low_complexity Low_complexity 21 39 0 28 61 0 0 chr3_random 744765 744814 -7683467 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr3_random 745586 745614 -7682667 + AT_rich Low_complexity Low_complexity 1 28 0 568 230 103 18 chr3_random 745834 746010 -7682271 + MER45 DNA AcHobo 1 195 -758 312 161 0 0 chr3_random 746257 746319 -7681962 + (TG)n Simple_repeat Simple_repeat 2 63 0 1459 183 24 33 chr3_random 746624 746958 -7681323 + MER45B DNA AcHobo 706 1036 -4 2364 69 7 0 chr3_random 747164 747467 -7680814 - AluY SINE Alu -6 305 1 2023 131 7 7 chr3_random 747637 747942 -7680339 + AluSg SINE Alu 1 305 -5 445 354 186 29 chr3_random 748639 748984 -7679297 + L2 LINE L2 2911 3309 -4 184 225 25 0 chr3_random 749097 749137 -7679144 - L2 LINE L2 -94 3219 3179 43 85 0 0 chr3_random 752126 752232 -7676049 + AT_rich Low_complexity Low_complexity 1 106 0 1076 198 155 38 chr3_random 752887 753246 -7675035 - L1MD2 LINE L1 -91 6073 5831 1894 162 37 11 chr3_random 753296 753673 -7674608 + MLT1B LTR MaLR 1 387 -3 24 32 0 0 chr3_random 755144 755175 -7673106 + AT_rich Low_complexity Low_complexity 1 31 0 259 276 0 0 chr3_random 755798 755856 -7672425 - L2 LINE L2 -5 3308 3251 486 341 55 18 chr3_random 756127 756400 -7671881 - L2 LINE L2 -3 3310 3028 201 39 0 0 chr3_random 757020 757046 -7671235 + (A)n Simple_repeat Simple_repeat 1 26 0 224 301 75 11 chr3_random 758751 758844 -7669437 - MIR SINE MIR -72 136 66 385 139 0 42 chr3_random 758941 759013 -7669268 + Tigger2 DNA MER2_type 1 69 -2649 * 2509 160 9 20 chr3_random 759003 759454 -7668827 + Tigger2 DNA MER2_type 2273 2718 0 209 356 78 0 chr3_random 759960 760075 -7668206 + L2 LINE L2 2912 3035 -237 314 292 31 0 chr3_random 760166 760262 -7668019 - MIR SINE MIR -44 218 120 21 0 0 0 chr3_random 762836 762857 -7665424 + AT_rich Low_complexity Low_complexity 1 21 0 204 263 79 13 chr3_random 763513 763589 -7664692 - L2 LINE L2 -2 3270 3190 22 0 0 0 chr3_random 764157 764179 -7664102 + AT_rich Low_complexity Low_complexity 1 22 0 199 313 25 12 chr3_random 764616 764696 -7663585 - MIR SINE MIR -111 151 71 248 259 0 0 chr3_random 765108 765166 -7663115 - MER94 DNA DNA -2 132 75 184 327 131 0 chr3_random 765178 765285 -7662996 + MIR SINE MIR 142 262 0 25 51 0 0 chr3_random 766210 766249 -7662032 + AT_rich Low_complexity Low_complexity 1 39 0 8845 43 0 0 chr3_random 767302 769150 -7659131 - L1PA4 LINE L1 -4 6151 4300 46 54 0 0 chr3_random 771137 771211 -7657070 + AT_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr3_random 771857 771879 -7656402 + AT_rich Low_complexity Low_complexity 1 22 0 237 211 0 0 chr3_random 771894 771946 -7656335 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 19048 197 27 28 chr3_random 772066 773762 -7654519 + L1MA1 LINE L1 13 1709 -6012 396 0 0 0 chr3_random 773762 773806 -7654475 + (GA)n Simple_repeat Simple_repeat 1 44 0 19048 197 27 28 chr3_random 773806 779808 -7648473 + L1MA1 LINE L1 1709 7697 -24 180 323 0 32 chr3_random 780088 780150 -7648131 - MIR3 SINE MIR -135 73 14 21 0 0 0 chr3_random 780183 780204 -7648077 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr3_random 780285 780334 -7647947 + AT_rich Low_complexity Low_complexity 1 49 0 248 317 149 28 chr3_random 781425 781674 -7646607 + L2 LINE L2 1773 2051 -1263 225 328 21 118 chr3_random 781827 782065 -7646216 + L2 LINE L2 2321 2535 -779 1909 173 0 0 chr3_random 782809 783121 -7645160 - AluSx SINE Alu 0 312 1 1651 104 4 0 chr3_random 783440 783681 -7644600 - L1PA8 LINE L1 -8 6164 5923 844 133 40 0 chr3_random 784608 784759 -7643522 - MSTA-int LTR MaLR -1494 157 1 848 177 131 20 chr3_random 784761 784959 -7643322 - MSTA LTR MaLR -2 426 207 459 123 0 0 chr3_random 784961 785042 -7643239 + (GA)n Simple_repeat Simple_repeat 2 82 0 250 346 107 18 chr3_random 785155 785427 -7642854 - L2 LINE L2 -1198 2116 1821 3979 158 28 10 chr3_random 786628 787332 -7640949 + MER50 LTR ERV1 1 717 -17 736 291 36 22 chr3_random 787549 787732 -7640549 - MIR SINE MIR -5 257 69 3264 194 66 11 chr3_random 787732 788473 -7639808 + LTR48 LTR ERV1 3 784 -3 736 291 36 22 chr3_random 788473 788512 -7639769 - MIR SINE MIR -193 69 32 3325 146 32 9 chr3_random 788729 789297 -7638984 + MER34C LTR ERV1 5 585 0 21 0 0 0 chr3_random 789402 789423 -7638858 + AT_rich Low_complexity Low_complexity 1 21 0 3472 158 15 27 chr3_random 790368 791484 -7636797 + L1MA5A LINE L1 4872 5791 -360 2322 108 22 6 chr3_random 791335 791696 -7636585 + L1PB1 LINE L1 5783 6149 -2 * 3400 166 60 20 chr3_random 791704 792347 -7635934 + MER72 LTR ERV1 11 876 -47 2289 104 0 0 chr3_random 792347 792645 -7635636 + AluSq SINE Alu 1 298 -15 3400 166 60 20 chr3_random 792645 792686 -7635595 + MER72 LTR ERV1 876 914 -9 204 97 0 0 chr3_random 793840 793871 -7634410 + (CA)n Simple_repeat Simple_repeat 1 31 0 585 312 14 5 chr3_random 793892 794107 -7634174 - MER113 DNA MER1_type? 0 521 305 24 0 0 0 chr3_random 794147 794171 -7634110 + AT_rich Low_complexity Low_complexity 1 24 0 2462 53 0 10 chr3_random 794614 794944 -7633337 + AluY SINE Alu 2 311 0 32 67 0 0 chr3_random 795086 795146 -7633135 + AT_rich Low_complexity Low_complexity 1 60 0 247 284 99 0 chr3_random 795550 795631 -7632650 + L2 LINE L2 2619 2707 -607 1391 140 45 35 chr3_random 795634 795948 -7632333 - MER33 DNA MER1_type -6 318 2 273 384 7 7 chr3_random 795949 796095 -7632186 + L2 LINE L2 2698 2843 -471 730 294 115 35 chr3_random 796134 796750 -7631531 + L2 LINE L2 2651 3313 0 189 333 302 0 chr3_random 796914 797106 -7631175 + L2 LINE L2 3015 3264 -8 2028 119 14 0 chr3_random 797825 798118 -7630163 - AluSx SINE Alu -15 297 1 1796 171 13 0 chr3_random 798530 798834 -7629447 - AluSc SINE Alu -1 308 1 7562 132 2 58 chr3_random 799134 800411 -7627870 + THE1C-int LTR MaLR 376 1580 0 2126 153 13 24 chr3_random 800411 800790 -7627491 + THE1C LTR MaLR 1 375 0 1702 191 3 3 chr3_random 800818 801112 -7627169 - AluJb SINE Alu -18 294 1 271 219 73 12 chr3_random 801129 801211 -7627070 + MER58 DNA MER1_type 2319 2405 -15 461 275 54 7 chr3_random 801370 801519 -7626762 - L1MA10 LINE L1 -9 6325 6170 * 801 213 42 21 chr3_random 801504 801791 -7626490 - L1MEc LINE L1 -3997 2399 2107 702 295 105 41 chr3_random 801817 802180 -7626101 - L1MEc LINE L1 -5975 421 36 711 279 20 10 chr3_random 802305 802556 -7625725 + L1M1 LINE L1 5435 5693 -506 2212 171 34 7 chr3_random 802637 803052 -7625229 + MSTB LTR MaLR 1 426 0 1251 118 6 0 chr3_random 803468 803638 -7624643 - AluSq SINE Alu -8 305 135 507 81 0 0 chr3_random 804591 804665 -7623616 - AluSp/q SINE Alu -2 311 238 1943 138 0 3 chr3_random 804761 805044 -7623237 + AluSx SINE Alu 1 282 -30 378 0 0 0 chr3_random 805061 805103 -7623178 + (CA)n Simple_repeat Simple_repeat 1 42 0 301 366 79 60 chr3_random 805271 805588 -7622693 + L1MDa LINE L1 3 325 -6215 266 295 9 48 chr3_random 807129 807234 -7621047 - MIR SINE MIR -6 256 156 531 287 43 43 chr3_random 807234 807352 -7620929 + MIR SINE MIR 20 140 -122 1538 189 45 28 chr3_random 807352 807711 -7620570 + MLT1A1 LTR MaLR 1 365 0 531 287 43 43 chr3_random 807711 807801 -7620480 + MIR SINE MIR 139 228 -34 771 276 101 18 chr3_random 807852 808138 -7620143 + MLT1G1 LTR MaLR 1 310 -285 286 220 0 0 chr3_random 808258 808317 -7619964 + MLT1G1 LTR MaLR 537 595 0 2005 172 3 26 chr3_random 808484 808868 -7619413 + THE1C LTR MaLR 1 375 0 425 273 104 13 chr3_random 809485 809639 -7618642 - MIR SINE MIR -54 208 41 228 35 0 0 chr3_random 809687 809716 -7618565 + (TG)n Simple_repeat Simple_repeat 1 29 0 1948 151 0 10 chr3_random 810251 810550 -7617731 - AluSx SINE Alu -16 296 1 400 323 37 6 chr3_random 813051 813215 -7615066 + MIR SINE MIR 89 257 -5 1163 238 13 0 chr3_random 813327 813562 -7614719 + MER8 DNA MER2_type 2 239 0 28 61 0 0 chr3_random 813598 813647 -7614634 + AT_rich Low_complexity Low_complexity 1 49 0 864 284 53 0 chr3_random 814441 814666 -7613615 + MIR SINE MIR 5 241 -21 599 311 65 92 chr3_random 815339 815773 -7612508 + L2 LINE L2 2511 2932 -382 264 293 50 20 chr3_random 815870 815969 -7612312 + L2 LINE L2 3163 3264 -8 1572 174 64 7 chr3_random 816067 816349 -7611932 + AluSx SINE Alu 1 298 -14 205 364 12 99 chr3_random 817874 818036 -7610245 + L2 LINE L2 3123 3270 -2 338 313 23 8 chr3_random 818199 818330 -7609951 - MIR SINE MIR -13 249 117 215 263 40 79 chr3_random 818331 818407 -7609874 + MIR SINE MIR 4 76 -186 551 268 61 24 chr3_random 819173 819337 -7608944 + MER5B DNA MER1_type 3 172 -6 14315 178 23 25 chr3_random 820448 824704 -7603577 + L1MA3 LINE L1 18 4646 -2919 8043 159 8 21 chr3_random 824702 826289 -7601992 + L1MA3 LINE L1 5210 6761 -963 * 1733 143 25 0 chr3_random 826289 826575 -7601706 + AluSx SINE Alu 20 312 0 8043 159 8 21 chr3_random 826575 827527 -7600754 + L1MA3 LINE L1 6761 7724 0 264 246 0 15 chr3_random 827617 827682 -7600599 + L1MA8 LINE L1 5951 6014 -277 1320 13 0 6 chr3_random 827886 828043 -7600238 - L1PA2 LINE L1 -4 6151 5996 665 104 80 0 chr3_random 828043 828164 -7600117 + L1MA8 LINE L1 6151 6285 -6 798 276 10 10 chr3_random 828230 828433 -7599848 - LTR16C LTR ERVL -122 369 167 22 56 0 0 chr3_random 828895 828931 -7599350 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3_random 829565 829587 -7598694 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr3_random 829758 829787 -7598494 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr3_random 830405 830434 -7597847 + AT_rich Low_complexity Low_complexity 1 29 0 570 302 151 24 chr3_random 830434 830845 -7597436 - L1ME3A LINE L1 -298 5872 5410 389 319 71 81 chr3_random 830936 830999 -7597282 + MLT1I LTR MaLR 85 147 -262 1893 119 27 30 chr3_random 830999 831467 -7596814 - AluSx SINE Alu 0 467 1 389 319 71 81 chr3_random 831467 831712 -7596569 + MLT1I LTR MaLR 147 391 -18 844 304 43 12 chr3_random 833163 833492 -7594789 + MLT1I LTR MaLR 63 401 -8 280 220 0 17 chr3_random 833493 833552 -7594729 + MER91 DNA MER1_type 81 138 -2 23 0 0 0 chr3_random 833778 833801 -7594480 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr3_random 834789 834820 -7593461 + AT_rich Low_complexity Low_complexity 1 31 0 202 286 14 29 chr3_random 835050 835120 -7593161 + L3b LINE CR1 1285 1353 -230 19720 204 43 18 chr3_random 835848 839584 -7588697 + HERVL-B2 LTR ERVL 91 4057 -1707 2083 117 7 10 chr3_random 839584 839882 -7588399 + AluSx SINE Alu 1 297 -15 19720 204 43 18 chr3_random 839882 841113 -7587168 + HERVL-B2 LTR ERVL 4057 5255 -509 1441 122 128 50 chr3_random 841115 841436 -7586845 + MER4A LTR ERV1 1 346 -318 650 170 239 28 chr3_random 841445 841692 -7586589 + MER4C LTR ERV1 149 447 -18 2435 153 98 4 chr3_random 841714 841876 -7586405 + HERVL-B2 LTR ERVL 5257 5402 -362 192 40 0 0 chr3_random 841876 841901 -7586380 + (TG)n Simple_repeat Simple_repeat 2 26 0 2435 153 98 4 chr3_random 841901 842196 -7586085 + HERVL-B2 LTR ERVL 5402 5757 -7 1347 247 101 20 chr3_random 842196 842601 -7585680 + MLT2B2 LTR ERVL 1 438 -77 249 57 0 0 chr3_random 842618 842653 -7585628 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr3_random 843603 843626 -7584655 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3_random 843808 843843 -7584438 + AT_rich Low_complexity Low_complexity 1 35 0 253 140 60 0 chr3_random 844085 844135 -7584146 + MLT1D LTR MaLR 51 103 -402 1996 212 29 85 chr3_random 844308 844922 -7583359 + MLT1E2 LTR MaLR 47 626 0 1427 173 24 0 chr3_random 845754 846043 -7582238 + L1MA7 LINE L1 5996 6291 0 2006 138 3 0 chr3_random 846205 846503 -7581778 - AluSp SINE Alu -14 299 1 45 0 0 0 chr3_random 847927 847972 -7580309 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3_random 848013 848036 -7580245 + AT_rich Low_complexity Low_complexity 1 23 0 352 293 147 19 chr3_random 848387 848544 -7579737 + MIR SINE MIR 84 260 -2 22 35 0 0 chr3_random 848609 848638 -7579643 + AT_rich Low_complexity Low_complexity 1 29 0 199 182 0 0 chr3_random 849037 849070 -7579211 - L2 LINE L2 -20 3293 3261 195 309 119 0 chr3_random 849455 849539 -7578742 + L2 LINE L2 3179 3272 0 1181 264 96 39 chr3_random 849729 850217 -7578064 - LTR40a LTR ERVL -3 516 1 222 161 65 0 chr3_random 850583 850645 -7577636 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 31 0 0 0 chr3_random 851819 851850 -7576431 + AT_rich Low_complexity Low_complexity 1 31 0 1524 181 22 18 chr3_random 851998 852275 -7576006 - AluJo SINE Alu -22 290 13 1422 208 94 3 chr3_random 852412 852772 -7575509 - L1MD3 LINE L1 0 7995 7603 23 33 0 0 chr3_random 852855 852885 -7575396 + AT_rich Low_complexity Low_complexity 1 30 0 214 317 158 24 chr3_random 852977 853141 -7575140 - L2 LINE L2 0 3272 3087 28 0 0 0 chr3_random 853528 853556 -7574725 + AT_rich Low_complexity Low_complexity 1 28 0 410 326 109 66 chr3_random 853618 854360 -7573921 - L2 LINE L2 -604 2710 1937 22 0 0 0 chr3_random 854999 855021 -7573260 + AT_rich Low_complexity Low_complexity 1 22 0 627 303 91 75 chr3_random 855389 855907 -7572374 + HAL1 LINE L1 1632 2157 -350 244 228 139 63 chr3_random 855950 856108 -7572173 + HAL1 LINE L1 2284 2453 -54 24 53 0 0 chr3_random 856131 856169 -7572112 + AT_rich Low_complexity Low_complexity 1 38 0 1947 129 122 37 chr3_random 856296 856706 -7571575 + MER65A LTR ERV1 1 445 0 1621 223 48 11 chr3_random 857121 857139 -7571142 - L1 LINE L1 -1681 4465 4449 576 200 9 0 chr3_random 857139 857249 -7571032 - L1PB4 LINE L1 -5 6151 6041 1621 223 48 11 chr3_random 857249 857746 -7570535 - L1 LINE L1 -1697 4449 3887 1438 232 36 6 chr3_random 857739 858101 -7570180 - L1 LINE L1 -2589 3557 3185 * 3167 120 19 0 chr3_random 858104 858587 -7569694 - MER75 DNA T2_type -22 492 1 4824 243 64 30 chr3_random 858611 861035 -7567246 - L1PBb LINE L1 -2976 3873 1351 436 222 61 0 chr3_random 861019 861118 -7567163 - L1PBb LINE L1 -5272 1577 1473 * 280 372 16 28 chr3_random 861118 861368 -7566913 - L1PBb LINE L1 -5285 1564 1318 440 343 186 10 chr3_random 861819 862023 -7566258 - L1PBb LINE L1 -5892 958 719 1078 297 108 13 chr3_random 862122 862577 -7565704 - L1PBb LINE L1 -6351 499 2 625 60 0 0 chr3_random 862618 862701 -7565580 - L1PA5 LINE L1 -2 6152 6070 550 273 83 39 chr3_random 862899 863104 -7565177 - MIR SINE MIR -16 246 33 25 0 0 0 chr3_random 863392 863417 -7564864 + AT_rich Low_complexity Low_complexity 1 25 0 343 266 17 8 chr3_random 863623 863743 -7564538 - L1MCa LINE L1 -865 1922 1586 1293 173 0 48 chr3_random 863791 864039 -7564242 - AluJo SINE Alu -76 236 1 361 345 88 31 chr3_random 864155 864416 -7563865 - L1MCa LINE L1 -5283 1133 858 204 40 0 0 chr3_random 864592 864617 -7563664 + (TG)n Simple_repeat Simple_repeat 1 25 0 276 298 229 0 chr3_random 864775 864906 -7563375 + MER5A DNA MER1_type 26 186 -3 602 223 62 73 chr3_random 865373 865657 -7562624 + LTR48 LTR ERV1 11 367 -411 486 350 0 17 chr3_random 865986 866166 -7562115 + MER5B DNA MER1_type 1 177 -1 241 301 0 14 chr3_random 868190 868263 -7560018 + L2 LINE L2 3242 3313 0 216 133 44 0 chr3_random 869152 869197 -7559084 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1471 218 93 16 chr3_random 870446 870896 -7557385 + MER31A LTR ERV1 1 485 0 2242 84 19 10 chr3_random 870949 871257 -7557024 - AluY SINE Alu 0 311 1 1555 186 62 3 chr3_random 871322 871612 -7556669 + AluJb SINE Alu 5 311 -1 1555 150 14 46 chr3_random 871675 871955 -7556326 + AluSx SINE Alu 21 291 -21 3063 147 40 0 chr3_random 872060 872558 -7555723 + L1PB3 LINE L1 5594 6111 -43 1138 199 40 38 chr3_random 872661 873006 -7555275 + MER39 LTR ERV1 363 585 0 26 30 0 0 chr3_random 874264 874297 -7553984 + AT_rich Low_complexity Low_complexity 1 33 0 347 21 43 0 chr3_random 875619 875666 -7552615 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 261 57 0 0 chr3_random 876201 876236 -7552045 + (TC)n Simple_repeat Simple_repeat 2 36 0 321 238 148 0 chr3_random 876244 876345 -7551936 + MER63 DNA MER1_type 6 747 -89 233 323 0 16 chr3_random 876370 876432 -7551849 + MER63 DNA MER1_type 994 1054 -7 23 54 0 0 chr3_random 879189 879226 -7549055 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3_random 879738 879766 -7548515 + AT_rich Low_complexity Low_complexity 1 28 0 422 321 119 41 chr3_random 880839 881182 -7547099 + L3 LINE CR1 405 774 -803 197 275 83 28 chr3_random 881216 881325 -7546956 + L3 LINE CR1 888 1002 -575 314 253 91 10 chr3_random 881438 881537 -7546744 - MIR SINE MIR -70 192 86 198 348 36 0 chr3_random 881647 881759 -7546522 + L3 LINE CR1 1149 1264 -313 208 387 126 0 chr3_random 881765 881876 -7546405 + L3 LINE CR1 1430 1554 -23 2914 189 24 0 chr3_random 882521 883427 -7544854 + L1MA9 LINE L1 4746 5672 -619 3005 154 57 14 chr3_random 883527 884157 -7544124 + L1MA9 LINE L1 5652 6308 -4 195 42 0 0 chr3_random 885177 885201 -7543080 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 0 0 0 chr3_random 885798 885824 -7542457 + AT_rich Low_complexity Low_complexity 1 26 0 180 111 0 0 chr3_random 886634 886661 -7541620 + (GA)n Simple_repeat Simple_repeat 2 28 0 619 351 50 24 chr3_random 886729 887153 -7541128 + LTR16A LTR ERVL 16 450 0 186 260 0 20 chr3_random 887286 887336 -7540945 + L2 LINE L2 3263 3311 -2 237 321 99 38 chr3_random 889402 889534 -7538747 + MIR SINE MIR 7 147 -61 2007 139 0 13 chr3_random 889536 889838 -7538443 + AluSx SINE Alu 1 298 -14 312 236 110 55 chr3_random 890542 890669 -7537612 + L2 LINE L2 3180 3313 0 203 264 19 0 chr3_random 890930 890983 -7537298 + L3 LINE CR1 1289 1342 -235 254 324 40 0 chr3_random 891657 891731 -7536550 + L3 LINE CR1 1392 1468 -109 23 0 0 0 chr3_random 893213 893236 -7535045 + AT_rich Low_complexity Low_complexity 1 23 0 2657 144 89 7 chr3_random 893474 893924 -7534357 - LTR1 LTR ERV1 0 785 299 2089 203 12 2 chr3_random 894281 894700 -7533581 + L1P4 LINE L1 2214 2636 -3510 10379 170 11 17 chr3_random 894800 897202 -7531079 + L1P4 LINE L1 3349 5735 -426 1392 287 31 14 chr3_random 897325 897740 -7530541 - MLT1H1 LTR MaLR -30 525 104 258 258 43 54 chr3_random 897806 897899 -7530382 - MIR SINE MIR -77 131 40 270 243 122 47 chr3_random 898423 898530 -7529751 + MIR3 SINE MIR 86 200 -8 201 317 87 19 chr3_random 899160 899264 -7529017 + MIR SINE MIR 31 141 -121 203 79 26 0 chr3_random 899471 899509 -7528772 + (TA)n Simple_repeat Simple_repeat 2 40 0 995 316 51 16 chr3_random 899806 900239 -7528042 - MLT1J2 LTR MaLR -2 448 1 23 33 0 0 chr3_random 900695 900725 -7527556 + AT_rich Low_complexity Low_complexity 1 30 0 472 284 116 28 chr3_random 901477 901692 -7526589 + MIR SINE MIR 3 236 -26 180 0 0 0 chr3_random 902311 902331 -7525950 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 22 88 0 0 chr3_random 902482 902539 -7525742 + AT_rich Low_complexity Low_complexity 1 57 0 238 121 138 0 chr3_random 902587 902645 -7525636 - L1MA5 LINE L1 -114 6183 6118 372 119 0 0 chr3_random 903420 903442 -7524839 + (TG)n Simple_repeat Simple_repeat 1 81 0 372 119 0 0 chr3_random 903442 903501 -7524780 + (TG)n Simple_repeat Simple_repeat 2 60 0 591 287 114 5 chr3_random 903764 903819 -7524462 - MLT1J LTR MaLR -233 278 230 534 235 9 138 chr3_random 903819 904036 -7524245 + MER5A DNA MER1_type 1 189 0 591 287 114 5 chr3_random 904036 904182 -7524099 - MLT1J LTR MaLR -281 230 55 1705 68 5 0 chr3_random 904284 904506 -7523775 - L1PA5 LINE L1 -2 6152 5930 512 17 0 0 chr3_random 904506 904566 -7523715 + L1P2 LINE L1 5428 5487 -667 301 348 39 22 chr3_random 904674 904855 -7523426 - MIR SINE MIR -51 211 28 190 315 97 42 chr3_random 906072 906172 -7522109 - MIR SINE MIR -12 250 136 2043 143 0 3 chr3_random 906172 906479 -7521802 - AluSx SINE Alu -6 306 1 190 315 97 42 chr3_random 906479 906543 -7521738 - MIR SINE MIR -126 136 77 245 236 28 28 chr3_random 906671 906743 -7521538 + MLT1I LTR MaLR 130 201 -208 384 75 0 75 chr3_random 957314 957381 -7470900 - Alu SINE Alu -239 62 1 24 32 0 0 chr3_random 957440 957471 -7470810 + AT_rich Low_complexity Low_complexity 1 31 0 1937 122 3 14 chr3_random 958615 958929 -7469352 + AluSq SINE Alu 1 313 0 23 54 0 0 chr3_random 958988 959025 -7469256 + AT_rich Low_complexity Low_complexity 1 37 0 283 206 294 62 chr3_random 960366 960512 -7467769 - MIR SINE MIR -76 186 7 377 256 64 16 chr3_random 960873 960998 -7467283 + MER94 DNA DNA 1 131 -3 429 325 0 45 chr3_random 961930 962087 -7466194 - MER5A DNA MER1_type -5 184 35 297 0 0 0 chr3_random 963017 963050 -7465231 + (TG)n Simple_repeat Simple_repeat 2 34 0 422 250 0 0 chr3_random 963336 963420 -7464861 - MER69 DNA AcHobo -93 84 1 261 284 54 0 chr3_random 964164 964238 -7464043 - MER58C DNA MER1_type -18 197 120 351 349 114 28 chr3_random 964665 964989 -7463292 - L2 LINE L2 0 3272 2921 651 286 79 0 chr3_random 965017 965195 -7463086 + MIR SINE MIR 7 198 -64 546 241 62 0 chr3_random 965392 965504 -7462777 + MER5B DNA MER1_type 58 176 -2 232 338 53 24 chr3_random 965558 965731 -7462550 - MER5B DNA MER1_type -11 167 1 21 0 0 0 chr3_random 965769 965790 -7462491 + AT_rich Low_complexity Low_complexity 1 21 0 203 377 113 25 chr3_random 966543 966702 -7461579 - L3 LINE CR1 -5 1572 1400 1184 210 79 22 chr3_random 967246 967621 -7460660 + MSTB1 LTR MaLR 1 431 -1 915 271 92 31 chr3_random 967889 968498 -7459783 + L2 LINE L2 2626 3251 -62 231 347 100 41 chr3_random 969108 969611 -7458670 - L3 LINE CR1 -841 736 147 2473 78 0 0 chr3_random 969671 969979 -7458302 - AluY SINE Alu -3 308 1 23 68 0 0 chr3_random 970001 970045 -7458236 + AT_rich Low_complexity Low_complexity 1 44 0 987 297 130 18 chr3_random 970425 971165 -7457116 - L1M4 LINE L1 -1744 4402 3580 606 291 65 5 chr3_random 971193 971392 -7456889 + L2 LINE L2 1273 1483 -1831 2137 158 58 17 chr3_random 974702 975113 -7453168 - MSTA LTR MaLR 0 428 1 1932 143 148 8 chr3_random 975223 975594 -7452687 + MSTA LTR MaLR 1 423 -5 237 149 14 27 chr3_random 977066 977140 -7451141 + (TTA)n Simple_repeat Simple_repeat 1 73 0 290 313 215 21 chr3_random 977628 978107 -7450174 + L2 LINE L2 1684 2255 -1059 2513 184 24 4 chr3_random 978154 978610 -7449671 + L1M3f LINE L1 6 470 -4858 2617 196 14 5 chr3_random 978610 979175 -7449106 + L1MA4 LINE L1 5726 6295 -5 186 43 0 0 chr3_random 979205 979228 -7449053 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 453 337 106 41 chr3_random 979536 980077 -7448204 + L2 LINE L2 2712 3294 -19 427 255 60 49 chr3_random 980183 980367 -7447914 - LTR16A1 LTR ERVL -229 228 43 258 346 75 32 chr3_random 980390 980578 -7447703 - MIR SINE MIR -47 215 20 1842 195 25 8 chr3_random 980995 981354 -7446927 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr3_random 981357 981386 -7446895 + AT_rich Low_complexity Low_complexity 1 29 0 1005 323 11 9 chr3_random 984162 984615 -7443666 - BSR/Beta Satellite Satellite -44 453 1 504 222 0 0 chr3_random 984632 984722 -7443559 - BSR/Beta Satellite Satellite -20 359 270 7448 34 0 0 chr3_random 984736 986120 -7442161 - L1PA4 LINE L1 0 6155 4773 288 294 65 20 chr3_random 987152 987305 -7440976 - L1ME LINE L1 -426 5695 5536 451 244 127 82 chr3_random 987463 987754 -7440527 - L1ME1 LINE L1 -10 6156 5853 25 0 0 0 chr3_random 987826 987851 -7440430 + AT_rich Low_complexity Low_complexity 1 25 0 36 62 0 0 chr3_random 987862 987926 -7440355 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr3_random 988397 988419 -7439862 + AT_rich Low_complexity Low_complexity 1 22 0 353 313 56 14 chr3_random 988795 988939 -7439342 - MIR SINE MIR -11 251 102 6162 98 21 6 chr3_random 989744 990638 -7437643 - L1PA13 LINE L1 -2 6161 5254 3724 175 67 31 chr3_random 990644 991308 -7436973 + L1P LINE L1 4360 5064 -1082 1977 127 7 3 chr3_random 991308 991600 -7436681 + AluSc SINE Alu 1 293 -16 3724 175 67 31 chr3_random 991600 991805 -7436476 + L1P LINE L1 5064 5260 -886 183 162 0 0 chr3_random 991879 991916 -7436365 + CT-rich Low_complexity Low_complexity 2 38 0 426 329 174 5 chr3_random 991976 992183 -7436098 - MIR SINE MIR -19 243 2 193 369 71 0 chr3_random 992445 992529 -7435752 + L2 LINE L2 3195 3284 -29 2165 109 0 3 chr3_random 993800 994094 -7434187 + AluY SINE Alu 1 293 -18 217 277 71 124 chr3_random 995094 995334 -7432947 - L2 LINE L2 -3 3269 2977 1129 234 130 3 chr3_random 995334 995680 -7432601 + MLT1B LTR MaLR 1 390 0 217 277 71 124 chr3_random 995680 995843 -7432438 - L2 LINE L2 -295 2977 2807 803 74 116 0 chr3_random 996230 996351 -7431930 + MER85 DNA T2_type 1 135 -4 610 317 9 13 chr3_random 997042 997272 -7431009 - MLT1H LTR MaLR -298 251 23 221 206 59 0 chr3_random 997352 997420 -7430861 + (TA)n Simple_repeat Simple_repeat 2 73 0 775 292 33 33 chr3_random 997546 997875 -7430406 + L1MEc LINE L1 168 496 -5900 7990 52 21 2 chr3_random 997937 998925 -7429356 + LTR13 LTR ERVK 1 1007 0 3364 117 20 0 chr3_random 998983 999528 -7428753 + L1M1 LINE L1 2234 2789 -4776 2981 221 19 11 chr3_random 999525 1000145 -7428136 - L1M1 LINE L1 -6930 635 11 * 1115 267 38 45 chr3_random 1000147 1000619 -7427662 + L1ME1 LINE L1 5691 6159 -7 22 103 0 0 chr3_random 1000673 1000751 -7427530 + AT_rich Low_complexity Low_complexity 1 78 0 639 166 11 28 chr3_random 1002707 1002888 -7425393 + GA-rich Low_complexity Low_complexity 3 180 0 248 203 34 0 chr3_random 1002976 1003035 -7425246 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 23 33 0 0 chr3_random 1003117 1003147 -7425134 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr3_random 1003840 1003869 -7424412 + AT_rich Low_complexity Low_complexity 1 29 0 1475 175 39 26 chr3_random 1003944 1004413 -7423868 + L1PA16 LINE L1 5017 5489 -677 721 165 8 16 chr3_random 1004425 1004552 -7423729 + AluJ SINE Alu 7 132 -180 337 232 36 62 chr3_random 1004555 1004667 -7423614 - L1MC4 LINE L1 -1339 6703 6595 849 185 6 43 chr3_random 1004690 1004852 -7423429 + AluJ SINE Alu 132 287 -25 3653 162 20 19 chr3_random 1004852 1005539 -7422742 + L1PA16 LINE L1 5476 6163 -3 868 283 45 48 chr3_random 1005726 1006147 -7422134 + LTR38 LTR ERV1 137 556 0 924 151 20 0 chr3_random 1006358 1006527 -7421754 + AluSg/x SINE Alu 135 306 0 881 261 42 0 chr3_random 1006710 1006925 -7421356 - MER58A DNA MER1_type 0 224 1 25695 142 16 16 chr3_random 1007130 1013530 -7414751 + L1PA8A LINE L1 3 6445 -1 2159 109 0 0 chr3_random 1013796 1014081 -7414200 + AluSq SINE Alu 21 305 -8 27 29 0 0 chr3_random 1014833 1014867 -7413414 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr3_random 1015001 1015037 -7413244 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr3_random 1016151 1016171 -7412110 + (TA)n Simple_repeat Simple_repeat 2 21 0 243 329 63 25 chr3_random 1016618 1016776 -7411505 + MLT1J2 LTR MaLR 266 429 -21 369 265 8 23 chr3_random 1016798 1016913 -7411368 + (TA)n Simple_repeat Simple_repeat 2 116 -15 279 0 0 0 chr3_random 1016913 1016944 -7411337 + (TG)n Simple_repeat Simple_repeat 2 32 0 369 265 8 23 chr3_random 1016944 1016960 -7411321 + (TA)n Simple_repeat Simple_repeat 116 131 0 288 329 12 0 chr3_random 1017778 1017863 -7410418 + MLT1J2 LTR MaLR 244 329 -121 246 105 0 0 chr3_random 1018428 1018466 -7409815 + (TC)n Simple_repeat Simple_repeat 1 38 0 330 358 120 11 chr3_random 1018487 1018838 -7409443 + L1M4c LINE L1 1390 1882 -4500 12378 148 47 29 chr3_random 1019267 1021644 -7406637 + Tigger1 DNA MER2_type 1 2418 0 363 23 0 0 chr3_random 1022390 1022446 -7405835 + (TC)n Simple_repeat Simple_repeat 1 100 0 363 23 0 0 chr3_random 1022446 1022490 -7405791 + (TC)n Simple_repeat Simple_repeat 2 45 0 240 35 0 0 chr3_random 1022506 1022535 -7405746 + (CA)n Simple_repeat Simple_repeat 2 30 0 650 124 0 0 chr3_random 1023684 1023781 -7404500 + AluY SINE Alu 1 97 -214 948 121 0 14 chr3_random 1023781 1023921 -7404360 + AluSc SINE Alu 160 297 -12 330 349 54 13 chr3_random 1023967 1024116 -7404165 + MIR3 SINE MIR 47 201 -7 294 289 151 7 chr3_random 1024703 1024855 -7403426 + MLT1H LTR MaLR 338 493 -56 381 260 175 25 chr3_random 1025782 1025982 -7402299 + MLT1H1 LTR MaLR 326 555 0 904 199 0 0 chr3_random 1026063 1026219 -7402062 + FRAM SINE Alu 1 156 -20 248 77 0 51 chr3_random 1027174 1027213 -7401068 + L1MA2 LINE L1 6213 6249 -55 1763 140 184 11 chr3_random 1027317 1027682 -7400599 + MSTA LTR MaLR 1 428 0 691 159 8 0 chr3_random 1029038 1029164 -7399117 + L1MA5A LINE L1 6168 6294 -3 614 249 139 29 chr3_random 1030050 1030259 -7398022 + MIR SINE MIR 15 246 -16 746 287 183 17 chr3_random 1030430 1030910 -7397371 - L2 LINE L2 -6 3307 2736 21 36 0 0 chr3_random 1031893 1031921 -7396360 + AT_rich Low_complexity Low_complexity 1 28 0 18614 84 2 0 chr3_random 1032018 1034507 -7393774 + L1P LINE L1 1 2495 -3651 1546 171 16 38 chr3_random 1085686 1085824 -7342457 + AluJo SINE Alu 1 141 -171 1763 183 3 7 chr3_random 1085824 1086124 -7342157 + AluJb SINE Alu 1 299 -13 1546 171 16 38 chr3_random 1086124 1086300 -7341981 + AluJo SINE Alu 141 308 -4 1685 114 9 0 chr3_random 1086577 1086804 -7341477 - AluSq SINE Alu -18 295 67 189 233 0 0 chr3_random 1086904 1086960 -7341321 + CT-rich Low_complexity Low_complexity 1 59 -44 2219 115 0 0 chr3_random 1086960 1087255 -7341026 - AluSq SINE Alu -5 308 14 189 233 0 0 chr3_random 1087255 1087301 -7340980 + CT-rich Low_complexity Low_complexity 58 103 0 385 231 14 0 chr3_random 1087337 1087484 -7340797 + CT-rich Low_complexity Low_complexity 2 150 0 282 56 0 0 chr3_random 1087484 1087520 -7340761 + (CA)n Simple_repeat Simple_repeat 1 36 0 573 122 0 0 chr3_random 1089263 1089345 -7338936 - AluY SINE Alu -228 82 1 846 122 0 0 chr3_random 1089625 1089748 -7338533 - AluSp/q SINE Alu -1 312 190 421 215 0 22 chr3_random 1089748 1089873 -7338408 + MLT1D LTR MaLR 260 495 -10 989 85 0 0 chr3_random 1089895 1090024 -7338257 - L1PA8 LINE L1 -10 6162 6034 896 97 0 0 chr3_random 1090024 1090137 -7338144 - AluSg SINE Alu -197 113 1 281 232 24 19 chr3_random 1090195 1090302 -7337979 + MLT1C LTR MaLR 31 114 -353 5051 25 0 0 chr3_random 1091978 1092566 -7335715 - L1PA4 LINE L1 -3 6152 5565 1172 203 58 21 chr3_random 1092566 1092857 -7335424 - MLT1A1 LTR MaLR -54 311 10 620 231 87 63 chr3_random 1093411 1093697 -7334584 + MLT1C LTR MaLR 53 345 -122 977 254 136 19 chr3_random 1093709 1094142 -7334139 + MLT1D LTR MaLR 3 486 -19 1830 211 42 2 chr3_random 1095069 1095476 -7332805 + L1MA8 LINE L1 5620 6042 -249 665 212 0 0 chr3_random 1095476 1095608 -7332673 + FLAM_C SINE Alu 1 132 -1 1518 189 7 0 chr3_random 1095628 1095903 -7332378 + AluJo SINE Alu 11 287 -25 785 83 15 75 chr3_random 1097474 1097607 -7330674 + THE1B LTR MaLR 171 295 -69 2262 91 0 3 chr3_random 1097963 1098260 -7330021 - AluSc SINE Alu -13 296 1 736 143 0 24 chr3_random 1099573 1099699 -7328582 + FRAM SINE Alu 42 164 -12 304 287 49 16 chr3_random 1099702 1099824 -7328457 + L1MD2 LINE L1 5600 5725 -2083 1288 211 42 131 chr3_random 1099874 1100475 -7327806 + L1MD2 LINE L1 5813 6359 0 523 204 0 0 chr3_random 1100489 1100582 -7327699 + AluJ/FLAM SINE Alu 1 93 -219 446 221 47 24 chr3_random 1101044 1101171 -7327110 + L1M1 LINE L1 18 147 -7418 * 1040 184 10 5 chr3_random 1101155 1101361 -7326920 + L1M1 LINE L1 1103 1309 -6256 2814 153 69 35 chr3_random 1101364 1101928 -7326353 - LTR1 LTR ERV1 0 785 203 332 240 21 21 chr3_random 1101928 1102059 -7326222 - LTR1 LTR ERV1 -539 246 16 1684 158 26 4 chr3_random 1102075 1102348 -7325933 - HUERS-P2 LTR ERV1 -1 3087 2809 207 0 0 0 chr3_random 1102348 1102371 -7325910 + (A)n Simple_repeat Simple_repeat 1 23 0 1525 165 4 0 chr3_random 1102372 1102645 -7325636 + AluY SINE Alu 3 276 -35 5920 121 11 4 chr3_random 1102870 1104146 -7324135 + L1PA11 LINE L1 4893 6174 0 960 278 47 49 chr3_random 1104500 1105014 -7323267 + MLT1G3 LTR MaLR 7 555 0 31 0 0 0 chr3_random 1105235 1105266 -7323015 + AT_rich Low_complexity Low_complexity 1 31 0 4843 238 41 10 chr3_random 1105439 1107333 -7320948 - L1 LINE L1 -2660 4905 2954 507 124 101 0 chr3_random 1107334 1107423 -7320858 + MER4A LTR ERV1 1 98 -566 1686 147 3 70 chr3_random 1107423 1107792 -7320489 + MER4A LTR ERV1 261 664 0 1852 280 33 14 chr3_random 1107825 1108762 -7319519 - L1M2 LINE L1 -4314 2037 1094 862 120 15 8 chr3_random 1109043 1109176 -7319105 + THE1C LTR MaLR 242 375 0 330 349 74 26 chr3_random 1109558 1109747 -7318534 + MIR3 SINE MIR 2 199 -9 28 48 0 0 chr3_random 1110108 1110150 -7318131 + AT_rich Low_complexity Low_complexity 1 42 0 258 283 57 28 chr3_random 1110160 1110266 -7318015 + L2 LINE L2 3200 3308 -5 1422 214 0 14 chr3_random 1110277 1110572 -7317709 + AluJo SINE Alu 6 296 -16 12775 213 63 8 chr3_random 1111077 1113906 -7314375 + L1MA4A LINE L1 2 3057 -3791 188 33 0 33 chr3_random 1113906 1113936 -7314345 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 12775 213 63 8 chr3_random 1113936 1114570 -7313711 + L1MA4A LINE L1 3057 3655 -3193 258 229 0 14 chr3_random 1114672 1114742 -7313539 + L1MA4A LINE L1 4000 4068 -2780 2863 191 269 64 chr3_random 1114763 1115919 -7312362 + L1MA4A LINE L1 4006 5398 -1450 5447 156 16 22 chr3_random 1116019 1117150 -7311131 + L1MA4A LINE L1 5876 7005 0 345 333 36 36 chr3_random 1119358 1119469 -7308812 + MER91A DNA MER1_type 12 122 -74 266 254 104 0 chr3_random 1119524 1119591 -7308690 + MER91A DNA MER1_type 123 196 0 189 0 0 0 chr3_random 1120172 1120193 -7308088 + (TC)n Simple_repeat Simple_repeat 2 22 0 1296 219 10 39 chr3_random 1120213 1120519 -7307762 - AluJb SINE Alu -15 297 1 303 296 42 35 chr3_random 1120645 1120787 -7307494 - L1MC/D LINE L1 -558 5801 5659 4599 149 59 11 chr3_random 1120860 1121745 -7306536 + L1MA4 LINE L1 5370 6296 -4 473 203 32 8 chr3_random 1121748 1121871 -7306410 + L1MB8 LINE L1 6044 6169 -9 28 48 0 0 chr3_random 1121872 1121914 -7306367 + AT_rich Low_complexity Low_complexity 1 42 0 2210 117 0 0 chr3_random 1122035 1122335 -7305946 + AluSx SINE Alu 1 300 -12 227 259 76 23 chr3_random 1122660 1122791 -7305490 + HAL1 LINE L1 2237 2374 -133 760 251 18 22 chr3_random 1123065 1123292 -7304989 - L1MC/D LINE L1 -784 5362 5137 302 210 90 10 chr3_random 1123411 1123511 -7304770 - L1MEc LINE L1 -1294 4921 4814 2422 196 8 16 chr3_random 1123526 1124002 -7304279 - L1MEc LINE L1 -1774 4441 3966 1926 120 29 4 chr3_random 1124002 1124298 -7303983 - AluSg SINE Alu 0 303 1 2422 196 8 16 chr3_random 1124298 1124325 -7303956 - L1MEc LINE L1 -2249 3966 3940 1999 181 28 14 chr3_random 1124325 1124679 -7303602 - THE1B LTR MaLR 0 364 6 2824 81 0 3 chr3_random 1124683 1125053 -7303228 - THE1B-int LTR MaLR 0 1580 1212 715 151 0 0 chr3_random 1125154 1125252 -7303029 - THE1B LTR MaLR -245 119 22 1077 112 95 12 chr3_random 1125252 1125421 -7302860 + THE1B LTR MaLR 1 183 -181 404 384 95 0 chr3_random 1126998 1127230 -7301051 - L1M3b LINE L1 -5797 484 231 3390 243 50 61 chr3_random 1127464 1128123 -7300158 - L1MEc LINE L1 -2572 3643 2978 2367 100 0 0 chr3_random 1128123 1128433 -7299848 - AluSx SINE Alu -2 310 1 3390 243 50 61 chr3_random 1128433 1129749 -7298532 - L1MEc LINE L1 -3237 2978 1735 1481 266 50 43 chr3_random 1129768 1130565 -7297716 - L1M4c LINE L1 -4438 2700 1751 580 178 0 9 chr3_random 1130585 1130692 -7297589 + LTR60 LTR ERV1 1 106 -480 1568 153 57 123 chr3_random 1130730 1131201 -7297080 + LTR60 LTR ERV1 106 545 -41 1049 191 36 80 chr3_random 1131042 1131378 -7296903 + TAR1 Satellite telomeric 2 322 -1789 * 3210 221 80 19 chr3_random 1131383 1132399 -7295882 - L1M4c LINE L1 -5134 1721 647 279 245 0 0 chr3_random 1132500 1132553 -7295728 - L1M4c LINE L1 -6184 675 623 782 227 80 37 chr3_random 1132554 1132853 -7295428 + L1M4 LINE L1 4731 5042 -1104 2660 110 8 0 chr3_random 1133046 1133418 -7294863 - THE1C LTR MaLR 0 375 1 4855 186 379 22 chr3_random 1133418 1134583 -7293698 - THE1C-int LTR MaLR 0 1580 1 2605 122 0 3 chr3_random 1134583 1134959 -7293322 - THE1C LTR MaLR 0 375 1 244 326 0 0 chr3_random 1135000 1135098 -7293183 + A-rich Low_complexity Low_complexity 1 98 0 468 235 83 52 chr3_random 1135114 1135344 -7292937 + L1M4 LINE L1 5166 5402 -744 4384 174 18 34 chr3_random 1136043 1136931 -7291350 - MER4D LTR ERV1 0 845 1 1829 46 0 5 chr3_random 1137105 1137321 -7290960 - AluY SINE Alu -12 299 85 260 292 167 30 chr3_random 1137999 1138167 -7290114 + MIR SINE MIR 59 249 -13 21 36 0 0 chr3_random 1138217 1138245 -7290036 + AT_rich Low_complexity Low_complexity 1 28 0 5232 178 25 22 chr3_random 1138659 1139877 -7288404 + L1MA9 LINE L1 5086 6311 -1 269 321 71 21 chr3_random 1140419 1140559 -7287722 - LTR33 LTR ERVL -236 285 139 227 212 76 0 chr3_random 1144205 1144271 -7284010 - HAL1 LINE L1 -2 2505 2435 252 306 18 36 chr3_random 1144995 1145106 -7283175 - LTR67 LTR ERVL -4 553 445 2111 111 0 10 chr3_random 1145675 1145963 -7282318 + AluSx SINE Alu 16 300 -12 3473 169 157 82 chr3_random 1145970 1147158 -7281123 - MER52C LTR ERV1 0 1278 2 1169 165 153 4 chr3_random 1148370 1148619 -7279662 + L1MC3 LINE L1 7480 7765 -20 400 299 21 35 chr3_random 1149431 1149575 -7278706 - MIR SINE MIR 0 262 121 322 269 11 11 chr3_random 1150050 1150106 -7278175 + CT-rich Low_complexity Low_complexity 3 61 -34 1693 203 16 42 chr3_random 1150106 1150490 -7277791 - MLT1A2 LTR MaLR 0 374 1 322 269 11 11 chr3_random 1150490 1150526 -7277755 + CT-rich Low_complexity Low_complexity 60 95 0 23 0 0 0 chr3_random 1150970 1150993 -7277288 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3_random 1151021 1151043 -7277238 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3_random 1151965 1152006 -7276275 + AT_rich Low_complexity Low_complexity 1 41 0 1734 210 153 2 chr3_random 1152562 1152986 -7275295 + MLT1D LTR MaLR 18 505 0 272 328 52 34 chr3_random 1153810 1154107 -7274174 - HAL1b LINE L1 -880 1458 161 1123 249 56 16 chr3_random 1155251 1155800 -7272481 - L1ME3A LINE L1 -68 6102 5471 300 238 16 8 chr3_random 1155998 1156120 -7272161 + (TA)n Simple_repeat Simple_repeat 1 123 0 8493 28 0 1 chr3_random 1156264 1157534 -7270747 - L1P2 LINE L1 -520 5635 4367 22 80 0 0 chr3_random 1157714 1157764 -7270517 + AT_rich Low_complexity Low_complexity 1 50 0 2117 164 65 10 chr3_random 1157857 1158259 -7270022 + MSTB LTR MaLR 3 426 0 593 325 118 0 chr3_random 1158998 1159226 -7269055 - MIR SINE MIR -1 261 7 312 311 58 53 chr3_random 1159347 1159537 -7268744 - MLT1K LTR MaLR -71 517 327 253 286 0 24 chr3_random 1160910 1160994 -7267287 - MLT1H LTR MaLR -13 536 455 1169 356 50 33 chr3_random 1161574 1162925 -7265356 + HERV16 LTR ERVL 1076 2500 -2496 355 319 44 20 chr3_random 1163239 1163443 -7264838 + HERV16 LTR ERVL 2695 2903 -2093 282 288 45 30 chr3_random 1163595 1163727 -7264554 - MLT1H LTR MaLR -310 239 106 1246 355 75 54 chr3_random 1163918 1165630 -7262651 + HERV16 LTR ERVL 2988 4736 -918 396 260 75 41 chr3_random 1165938 1166084 -7262197 + MIR SINE MIR 73 223 -39 25 31 0 0 chr3_random 1166175 1166207 -7262074 + AT_rich Low_complexity Low_complexity 1 32 0 446 322 42 14 chr3_random 1167519 1167662 -7260619 + MER91A DNA MER1_type 1 147 -49 983 250 80 40 chr3_random 1170495 1170943 -7257338 - MER110A LTR ERV1 -2 466 1 378 225 22 0 chr3_random 1171047 1171136 -7257145 - MER69A DNA AcHobo -19 158 68 21 71 0 0 chr3_random 1171824 1171866 -7256415 + AT_rich Low_complexity Low_complexity 1 42 0 555 278 97 4 chr3_random 1171872 1172131 -7256150 + MER113 DNA MER1_type? 167 449 -72 1192 188 50 4 chr3_random 1172381 1172621 -7255660 - MLT1A1 LTR MaLR 0 365 115 467 222 11 0 chr3_random 1173136 1173226 -7255055 - MLT1A1 LTR MaLR -279 95 5 328 240 10 60 chr3_random 1173293 1173372 -7254909 - L2 LINE L2 -10 3303 3228 1109 22 0 15 chr3_random 1173372 1173509 -7254772 + L1PA5 LINE L1 6016 6150 -4 328 240 10 60 chr3_random 1173509 1173529 -7254752 - L2 LINE L2 -85 3228 3209 259 261 18 9 chr3_random 1173605 1173716 -7254565 + A-rich Low_complexity Low_complexity 6 117 0 230 325 41 57 chr3_random 1174016 1174139 -7254142 + L2 LINE L2 3192 3312 -1 910 124 34 3 chr3_random 1174454 1174680 -7253601 + LTR69 LTR ERVL 4 298 -290 * 11532 151 43 6 chr3_random 1174678 1176672 -7251609 - Tigger1 DNA MER2_type -349 2069 2 3595 167 21 7 chr3_random 1177213 1177919 -7250362 - L1MA7 LINE L1 -2 6289 5574 208 75 25 25 chr3_random 1178452 1178492 -7249789 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr3_random 1178495 1178516 -7249765 + AT_rich Low_complexity Low_complexity 1 21 0 7539 31 0 1 chr3_random 1178661 1180090 -7248191 + L1PA3 LINE L1 4727 6152 -3 605 311 56 20 chr3_random 1180581 1180832 -7247449 + MLT1J LTR MaLR 1 260 -251 309 295 0 0 chr3_random 1180903 1180981 -7247300 + MLT1J LTR MaLR 387 464 -47 6776 195 65 13 chr3_random 1181629 1182652 -7245629 - L1MA7 LINE L1 -743 5403 4365 2260 82 24 0 chr3_random 1182652 1182820 -7245461 - AluY SINE Alu -10 301 122 270 0 0 0 chr3_random 1182820 1182850 -7245431 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2260 82 24 0 chr3_random 1182850 1182973 -7245308 - AluY SINE Alu -189 122 3 6776 195 65 13 chr3_random 1182973 1183609 -7244672 - L1MA7 LINE L1 -1781 4365 3764 2320 206 34 2 chr3_random 1184409 1185417 -7242864 + Tigger6a DNA MER2_type 2 1083 0 21 36 0 0 chr3_random 1186344 1186372 -7241909 + AT_rich Low_complexity Low_complexity 1 28 0 1633 120 143 4 chr3_random 1186922 1187181 -7241100 - AluSx SINE Alu -17 295 1 249 358 64 9 chr3_random 1187187 1187296 -7240985 - MIR SINE MIR -115 147 33 197 258 97 32 chr3_random 1187423 1187485 -7240796 + L2 LINE L2 3207 3272 0 414 39 0 0 chr3_random 1188799 1188851 -7239430 + (TG)n Simple_repeat Simple_repeat 2 53 0 237 319 33 11 chr3_random 1189264 1189355 -7238926 + L2 LINE L2 3221 3313 0 10760 152 30 19 chr3_random 1189475 1192092 -7236189 - HUERS-P2 LTR ERV1 -274 2814 1 3793 150 51 77 chr3_random 1192092 1192898 -7235383 - LTR1 LTR ERV1 0 785 1 13298 181 79 16 chr3_random 1192898 1193056 -7235225 + L1MA2 LINE L1 1309 1456 -6267 188 33 0 33 chr3_random 1193056 1193086 -7235195 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 13298 181 79 16 chr3_random 1193086 1194868 -7233413 + L1MA2 LINE L1 1456 3124 -4599 2165 124 0 3 chr3_random 1194868 1195167 -7233114 + AluY SINE Alu 3 300 -11 13298 181 79 16 chr3_random 1195167 1195367 -7232914 + L1MA2 LINE L1 3124 3310 -4413 2340 131 16 16 chr3_random 1195367 1195740 -7232541 - THE1C LTR MaLR 0 375 3 13298 181 79 16 chr3_random 1195740 1199629 -7228652 + L1MA2 LINE L1 3310 7723 0 508 282 141 5 chr3_random 1199643 1199849 -7228432 + MIR SINE MIR 20 253 -9 214 157 129 14 chr3_random 1200029 1200099 -7228182 - MIR SINE MIR -65 197 120 758 279 63 40 chr3_random 1201611 1201912 -7226369 + L2 LINE L2 2185 2492 -822 450 313 48 18 chr3_random 1202818 1203045 -7225236 + LTR16A1 LTR ERVL 222 455 -2 27 0 0 0 chr3_random 1203292 1203319 -7224962 + AT_rich Low_complexity Low_complexity 1 27 0 17948 171 32 20 chr3_random 1205508 1205604 -7222677 + L1MA1 LINE L1 13 106 -7615 297 0 0 0 chr3_random 1205604 1205637 -7222644 + (CA)n Simple_repeat Simple_repeat 2 34 0 17948 171 32 20 chr3_random 1205637 1210582 -7217699 + L1MA1 LINE L1 106 5164 -2557 1822 180 0 10 chr3_random 1210582 1210887 -7217394 + AluSx SINE Alu 1 302 -10 17948 171 32 20 chr3_random 1210887 1213471 -7214810 + L1MA1 LINE L1 5164 7717 -4 24 32 0 0 chr3_random 1213522 1213553 -7214728 + AT_rich Low_complexity Low_complexity 1 31 0 1655 170 22 33 chr3_random 1213832 1214197 -7214084 + MER46B DNA MER2_type 1 236 0 24 0 0 0 chr3_random 1214284 1214308 -7213973 + AT_rich Low_complexity Low_complexity 1 24 0 231 254 84 0 chr3_random 1215617 1215688 -7212593 - MIR SINE MIR -21 241 165 183 398 70 16 chr3_random 1215724 1215852 -7212429 + L2 LINE L2 3137 3271 -1 5488 67 36 4 chr3_random 1216972 1217721 -7210560 + LTR17 LTR ERV1 1 773 -7 6000 76 5 17 chr3_random 1217742 1218636 -7209645 + HERV17 LTR ERV1 1 847 -7779 586 151 25 20 chr3_random 1218661 1219122 -7209159 + GA-rich Low_complexity Low_complexity 1 463 0 33308 57 9 7 chr3_random 1219124 1223558 -7204723 + HERV17 LTR ERV1 704 5067 -3559 13307 56 5 1 chr3_random 1223549 1225267 -7203014 + HERV17 LTR ERV1 6902 8626 0 * 2875 69 23 8 chr3_random 1225292 1225682 -7202599 + LTR17 LTR ERV1 98 493 -287 9157 49 2 4 chr3_random 1225782 1227002 -7201279 - L1P LINE L1 -915 5231 4015 12640 50 0 11 chr3_random 1227002 1227518 -7200763 + L1P LINE L1 2325 2845 -3301 2341 41 38 60 chr3_random 1227518 1227836 -7200445 + AluY SINE Alu 1 311 0 12640 50 0 11 chr3_random 1227836 1229029 -7199252 + L1P LINE L1 2845 4016 -2130 1170 308 80 27 chr3_random 1229029 1229627 -7198654 - L1M4b LINE L1 -6135 724 95 338 216 46 0 chr3_random 1230199 1230483 -7197798 + (TA)n Simple_repeat Simple_repeat 1 297 0 2029 42 15 4 chr3_random 1230597 1230858 -7197423 + HERV17 LTR ERV1 4804 5067 -3559 * 13337 56 5 1 chr3_random 1230849 1232566 -7195715 + HERV17 LTR ERV1 6902 8626 0 4770 61 48 9 chr3_random 1232591 1233242 -7195039 + LTR17 LTR ERV1 98 773 -7 594 88 0 0 chr3_random 1233439 1233519 -7194762 + MADE1 DNA Mariner 1 80 0 233 185 0 31 chr3_random 1233653 1233718 -7194563 + (TAA)n Simple_repeat Simple_repeat 1 63 0 2579 208 102 157 chr3_random 1234370 1234702 -7193579 - L1MCb LINE L1 -4851 1194 845 2412 61 0 0 chr3_random 1234702 1234999 -7193282 - AluY SINE Alu -14 297 1 2579 208 102 157 chr3_random 1234999 1236035 -7192246 - L1MCb LINE L1 -5200 845 3 26 0 0 0 chr3_random 1236485 1236511 -7191770 + AT_rich Low_complexity Low_complexity 1 26 0 279 158 0 53 chr3_random 1237862 1237919 -7190362 - L2 LINE L2 -97 3216 3163 198 372 74 16 chr3_random 1238985 1239106 -7189175 - L2 LINE L2 -6 3307 3180 303 247 153 0 chr3_random 1239298 1239383 -7188898 - MIR SINE MIR -9 253 156 307 246 36 66 chr3_random 1240749 1240916 -7187365 - MER103 DNA DNA -3 163 2 3756 136 28 23 chr3_random 1241509 1242117 -7186164 - LTR9B LTR ERV1 0 644 31 2262 83 0 39 chr3_random 1242117 1242429 -7185852 - AluY SINE Alu -11 300 1 3756 136 28 23 chr3_random 1242429 1242461 -7185820 - LTR9B LTR ERV1 -613 31 1 22 35 0 0 chr3_random 1242482 1242511 -7185770 + AT_rich Low_complexity Low_complexity 1 29 0 1533 200 79 103 chr3_random 1242836 1243581 -7184700 - LTR8A LTR ERV1 0 727 1 320 304 44 6 chr3_random 1243633 1243791 -7184490 - L1ME3A LINE L1 -239 5931 5768 232 214 57 14 chr3_random 1243866 1243936 -7184345 - L1ME3A LINE L1 -447 5723 5651 1950 152 50 31 chr3_random 1243940 1244394 -7183887 - LTR8 LTR ERV1 0 691 270 2550 109 14 69 chr3_random 1244417 1244839 -7183442 - LTR8 LTR ERV1 -292 399 1 25 0 0 0 chr3_random 1245181 1245206 -7183075 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3_random 1245686 1245710 -7182571 + AT_rich Low_complexity Low_complexity 1 24 0 3381 264 110 13 chr3_random 1245831 1245869 -7182412 + L1ME3A LINE L1 560 593 -5622 2160 211 28 70 chr3_random 1245869 1246508 -7181773 - LTR9 LTR ERV1 0 612 1 3381 264 110 13 chr3_random 1246508 1248217 -7180064 + L1ME3A LINE L1 593 2538 -3677 829 241 43 0 chr3_random 1248256 1248513 -7179768 + L1ME3A LINE L1 2798 3065 -3150 * 1183 219 105 46 chr3_random 1248510 1248835 -7179446 + L1ME3A LINE L1 4460 4823 -1392 2471 92 0 83 chr3_random 1248835 1249246 -7179035 + MER51B LTR ERV1 1 377 0 1183 219 105 46 chr3_random 1249246 1249395 -7178886 + L1ME3A LINE L1 4823 4962 -1253 273 204 86 11 chr3_random 1249406 1249499 -7178782 + L1MA10 LINE L1 6176 6275 -59 394 340 42 25 chr3_random 1249572 1249857 -7178424 + MLT1H1 LTR MaLR 1 292 -298 1443 265 62 21 chr3_random 1249904 1250585 -7177696 + L1ME3A LINE L1 5232 5944 -295 1163 244 118 36 chr3_random 1250741 1251226 -7177055 - MER101B LTR ERV1 -31 516 24 3965 199 59 4 chr3_random 1251262 1252451 -7175830 - L1MC3 LINE L1 -743 5403 4889 910 226 34 30 chr3_random 1252757 1253053 -7175228 + pTR5 LTR ERV1 732 1028 -1410 4219 132 85 23 chr3_random 1253128 1253906 -7174375 + LTR12 LTR ERV1 1 826 0 239 333 0 0 chr3_random 1254576 1254642 -7173639 + (TG)n Simple_repeat Simple_repeat 1 66 0 1831 121 21 45 chr3_random 1255251 1255432 -7172849 - AluSp SINE Alu 0 320 148 2431 61 10 0 chr3_random 1255432 1255725 -7172556 - AluY SINE Alu -15 296 1 1831 121 21 45 chr3_random 1255725 1255868 -7172413 - AluSp SINE Alu -172 148 3 27 0 0 0 chr3_random 1255874 1255901 -7172380 + AT_rich Low_complexity Low_complexity 1 27 0 2624 192 38 60 chr3_random 1256395 1257084 -7171197 - L1MC3 LINE L1 -11 7774 7101 17006 42 0 3 chr3_random 1257236 1260141 -7168140 + L1PA3 LINE L1 3213 6155 0 621 267 4 76 chr3_random 1260234 1260470 -7167811 - MER20 DNA MER1_type 0 219 1 5226 191 10 11 chr3_random 1260923 1262581 -7165700 - L1PA15 LINE L1 -348 5817 4160 1777 187 50 14 chr3_random 1262582 1262940 -7165341 + L1PA15 LINE L1 5794 6164 -1 751 278 11 49 chr3_random 1264411 1264769 -7163512 + L1MA9 LINE L1 5945 6287 -4 1656 209 28 6 chr3_random 1266243 1266598 -7161683 - MLT1A1 LTR MaLR 0 365 3 32 26 0 0 chr3_random 1267045 1267084 -7161197 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3_random 1267096 1267118 -7161163 + AT_rich Low_complexity Low_complexity 1 22 0 2049 125 4 0 chr3_random 1267230 1267536 -7160745 + AluSq SINE Alu 1 307 0 1027 203 59 123 chr3_random 1268510 1268933 -7159348 + MSTD LTR MaLR 1 396 0 24 32 0 0 chr3_random 1270085 1270116 -7158165 + AT_rich Low_complexity Low_complexity 1 31 0 348 344 64 0 chr3_random 1270623 1270748 -7157533 - MIR3 SINE MIR -62 146 14 2472 225 110 54 chr3_random 1270817 1271949 -7156332 - L1M4 LINE L1 -4833 2022 816 516 172 0 179 chr3_random 1271949 1272100 -7156181 - FLAM_C SINE Alu -7 126 3 2472 225 110 54 chr3_random 1272100 1272211 -7156070 - L1M4 LINE L1 -6039 816 713 216 97 0 0 chr3_random 1272212 1272243 -7156038 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6865 64 0 5 chr3_random 1272243 1273397 -7154884 - L1PA5 LINE L1 -11 6143 4991 452 95 105 5 chr3_random 1273500 1273931 -7154350 + (TA)n Simple_repeat Simple_repeat 1 474 0 180 97 0 0 chr3_random 1273931 1273962 -7154319 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 * 345 124 89 5 chr3_random 1273960 1274384 -7153897 + (TA)n Simple_repeat Simple_repeat 1 459 0 41 0 0 0 chr3_random 1274388 1274429 -7153852 + AT_rich Low_complexity Low_complexity 1 41 0 260 168 40 0 chr3_random 1274445 1274546 -7153735 + (TA)n Simple_repeat Simple_repeat 2 106 0 24 0 0 0 chr3_random 1275338 1275362 -7152919 + AT_rich Low_complexity Low_complexity 1 24 0 1887 141 7 0 chr3_random 1275362 1275646 -7152635 - AluSx SINE Alu -26 286 1 23 54 0 0 chr3_random 1277941 1277978 -7150303 + AT_rich Low_complexity Low_complexity 1 37 0 267 265 132 79 chr3_random 1278291 1278480 -7149801 - MIR SINE MIR -8 254 56 7259 107 4 20 chr3_random 1278879 1279953 -7148328 + MER11C LTR ERVK 1 1057 -14 553 289 209 20 chr3_random 1279971 1280452 -7147829 + L2 LINE L2 2603 3173 -140 3642 155 41 52 chr3_random 1280454 1281184 -7147097 - MER72 LTR ERV1 0 722 1 2381 103 0 0 chr3_random 1281305 1281617 -7146664 + AluSq SINE Alu 1 312 -1 257 299 46 0 chr3_random 1282274 1282361 -7145920 + L2 LINE L2 3213 3303 -10 2262 97 3 0 chr3_random 1282935 1283245 -7145036 + AluY SINE Alu 3 313 0 1713 269 69 35 chr3_random 1284233 1284898 -7143383 - MER76 LTR ERV 0 688 1 803 51 31 0 chr3_random 1285503 1285601 -7142680 + U6 snRNA snRNA 1 101 -6 21 82 0 0 chr3_random 1285982 1286031 -7142250 + AT_rich Low_complexity Low_complexity 1 49 0 3418 153 22 22 chr3_random 1286043 1286680 -7141601 + L1MC1 LINE L1 5596 7691 -94 28 48 0 0 chr3_random 1286891 1286933 -7141348 + AT_rich Low_complexity Low_complexity 1 42 0 25708 66 2 2 chr3_random 1286933 1291974 -7136307 + L1P LINE L1 3 5044 -1102 7672 86 11 3 chr3_random 1292101 1293189 -7135092 + L1P LINE L1 3766 4862 -1284 17810 100 12 2 chr3_random 1293308 1295922 -7132359 - L1P3 LINE L1 -807 5654 3016 4890 61 25 2 chr3_random 1295925 1296935 -7131346 - MER11A LTR ERVK 0 1266 1 11882 129 20 35 chr3_random 1296936 1299926 -7128355 - L1P3 LINE L1 -3444 3017 1 229 286 0 0 chr3_random 1299971 1300027 -7128254 + L2 LINE L2 669 724 -2590 255 164 55 0 chr3_random 1300040 1300095 -7128186 - MIR SINE MIR -72 190 133 184 321 0 0 chr3_random 1300085 1300138 -7128143 + L2 LINE L2 1761 1813 -1501 * 560 302 142 25 chr3_random 1300139 1300540 -7127741 + L2 LINE L2 2149 2596 -718 609 309 204 42 chr3_random 1300642 1301283 -7126998 + L2 LINE L2 2576 3313 0 21 57 0 0 chr3_random 1301442 1301477 -7126804 + AT_rich Low_complexity Low_complexity 1 35 0 1081 243 20 0 chr3_random 1301504 1301751 -7126530 + L1MC3 LINE L1 7056 7307 -478 189 0 0 0 chr3_random 1303665 1303686 -7124595 + (A)n Simple_repeat Simple_repeat 1 21 0 1914 171 51 34 chr3_random 1303830 1304374 -7123907 + MLT2A2 LTR ERVL 1 554 0 23 0 0 0 chr3_random 1304995 1305018 -7123263 + AT_rich Low_complexity Low_complexity 1 23 0 751 265 138 73 chr3_random 1305981 1306502 -7121779 - MLT1H1 LTR MaLR 0 555 1 251 256 98 45 chr3_random 1307652 1307785 -7120496 - MLT1J2 LTR MaLR -274 176 37 1658 211 11 24 chr3_random 1307972 1308342 -7119939 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr3_random 1308429 1308455 -7119826 + AT_rich Low_complexity Low_complexity 1 26 0 314 329 55 88 chr3_random 1308498 1308826 -7119455 + L2 LINE L2 2992 3308 -5 219 69 0 0 chr3_random 1309742 1309771 -7118510 + (A)n Simple_repeat Simple_repeat 1 29 0 459 316 20 20 chr3_random 1310366 1310518 -7117763 + MIR SINE MIR 49 200 -62 295 336 9 18 chr3_random 1310756 1310866 -7117415 + MER94 DNA DNA 24 132 -2 28 0 0 0 chr3_random 1311685 1311713 -7116568 + AT_rich Low_complexity Low_complexity 1 28 0 654 317 105 41 chr3_random 1312509 1312928 -7115353 + MLT1J1 LTR MaLR 1 446 0 206 203 0 16 chr3_random 1313446 1313510 -7114771 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 4017 214 60 30 chr3_random 1317142 1318151 -7110130 + MER45B DNA AcHobo 1 1039 -1 29 0 0 0 chr3_random 1318813 1318842 -7109439 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr3_random 1319099 1319135 -7109146 + AT_rich Low_complexity Low_complexity 1 36 0 2138 55 0 0 chr3_random 1319253 1319509 -7108772 + AluY SINE Alu 1 256 -55 430 349 60 22 chr3_random 1319628 1319860 -7108421 + MIR SINE MIR 1 241 -21 26 30 0 0 chr3_random 1320976 1321009 -7107272 + AT_rich Low_complexity Low_complexity 1 33 0 423 350 78 22 chr3_random 1321800 1322710 -7105571 - L1M4 LINE L1 -1515 5442 4482 3374 113 4 13 chr3_random 1322765 1323289 -7104992 + L1PA13 LINE L1 5645 6163 0 241 153 17 17 chr3_random 1324263 1324322 -7103959 + CT-rich Low_complexity Low_complexity 2 60 0 36553 92 7 12 chr3_random 1324608 1328714 -7099567 - L1PA5 LINE L1 0 6154 2084 2331 96 0 10 chr3_random 1328714 1329026 -7099255 - AluY SINE Alu -2 309 1 36553 92 7 12 chr3_random 1329026 1331091 -7097190 - L1PA5 LINE L1 -4070 2084 11 1772 315 86 38 chr3_random 1331104 1332033 -7096248 - L1M4 LINE L1 -5875 984 11 1137 276 47 21 chr3_random 1332040 1332599 -7095682 - L1M4 LINE L1 -1900 4246 3674 1445 192 83 0 chr3_random 1332661 1332973 -7095308 - MER2 DNA MER2_type -3 341 4 409 349 34 22 chr3_random 1333262 1333531 -7094750 + L1PA12 LINE L1 2 273 -7308 4028 201 14 9 chr3_random 1333594 1334877 -7093404 + L1PA16 LINE L1 4325 5613 -553 2770 177 6 19 chr3_random 1334948 1335486 -7092795 + L1PA16 LINE L1 5636 6166 0 27 49 0 0 chr3_random 1336248 1336289 -7091992 + AT_rich Low_complexity Low_complexity 1 41 0 12933 170 24 16 chr3_random 1336411 1341736 -7086545 - L1MA1 LINE L1 0 7721 2352 425 151 0 0 chr3_random 1341719 1341792 -7086489 + L1M1 LINE L1 2197 2269 -5296 * 1026 258 218 27 chr3_random 1341911 1342461 -7085820 - LTR50 LTR ERVL -30 765 111 243 0 0 0 chr3_random 1342476 1342503 -7085778 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1721 185 3 3 chr3_random 1342917 1343215 -7085066 + AluSq SINE Alu 1 298 -15 6348 56 0 12 chr3_random 1343329 1344144 -7084137 - L1PA7 LINE L1 -3 6151 5347 4676 120 8 19 chr3_random 1344142 1344923 -7083358 + L1PA7 LINE L1 4572 5343 -803 * 14299 99 6 1 chr3_random 1346770 1349636 -7078645 + L1PA7 LINE L1 3264 6152 -2 227 305 215 29 chr3_random 1349645 1349891 -7078390 - L2 LINE L2 -2792 522 231 260 27 27 0 chr3_random 1351284 1351321 -7076960 + (CA)n Simple_repeat Simple_repeat 1 38 0 249 273 80 59 chr3_random 1353295 1353834 -7074447 - L1M4 LINE L1 -1586 4560 4011 257 73 24 24 chr3_random 1353979 1354020 -7074261 - L1M4 LINE L1 -2322 3824 3784 568 214 50 14 chr3_random 1354162 1354302 -7073979 - MLT2D LTR ERVL -269 145 1 409 267 119 23 chr3_random 1354512 1354815 -7073466 - L1M4 LINE L1 -2922 3224 2893 218 277 0 0 chr3_random 1355862 1355909 -7072372 + L2 LINE L2 3012 3058 -255 2276 146 37 0 chr3_random 1355909 1356285 -7071996 - MLT1B LTR MaLR 0 390 1 180 111 0 0 chr3_random 1356309 1356336 -7071945 + (TTA)n Simple_repeat Simple_repeat 3 29 0 225 0 0 0 chr3_random 1356931 1356956 -7071325 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr3_random 1357628 1357656 -7070625 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr3_random 1358345 1358380 -7069901 + AT_rich Low_complexity Low_complexity 1 35 0 881 274 53 44 chr3_random 1358386 1359205 -7069076 - L1MC/D LINE L1 -803 5343 4758 1446 231 41 63 chr3_random 1359230 1359770 -7068511 - L1ME2 LINE L1 -299 5865 5338 1342 303 61 26 chr3_random 1359765 1360206 -7068075 - L1ME2 LINE L1 -2103 4043 3619 * 2054 146 43 3 chr3_random 1360206 1360556 -7067725 + THE1B LTR MaLR 1 364 0 1342 303 61 26 chr3_random 1360556 1361098 -7067183 - L1ME2 LINE L1 -2527 3619 3026 24 24 0 24 chr3_random 1361101 1361124 -7067157 + AT_rich Low_complexity Low_complexity 1 24 -17 5794 114 7 8 chr3_random 1361124 1362866 -7065415 - L1PA11 LINE L1 -1 6173 4414 24 24 0 24 chr3_random 1362866 1362884 -7065397 + AT_rich Low_complexity Low_complexity 24 41 0 669 212 80 52 chr3_random 1362943 1363155 -7065126 - MER20 DNA MER1_type 0 219 2 1007 288 54 0 chr3_random 1363276 1363592 -7064689 - LTR16C LTR ERVL 0 491 159 30 0 0 0 chr3_random 1363930 1363960 -7064321 + AT_rich Low_complexity Low_complexity 1 30 0 341 302 80 75 chr3_random 1364401 1364775 -7063506 + HAL1 LINE L1 1800 2175 -332 276 229 68 8 chr3_random 1364842 1364960 -7063321 + HAL1 LINE L1 2291 2415 -92 21 36 0 0 chr3_random 1365064 1365092 -7063189 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr3_random 1365679 1365731 -7062550 + AT_rich Low_complexity Low_complexity 1 52 0 315 333 79 35 chr3_random 1366130 1366475 -7061806 - L2 LINE L2 -212 3060 2696 2099 76 0 4 chr3_random 1366520 1366797 -7061484 + AluY SINE Alu 28 303 -8 456 19 0 0 chr3_random 1366800 1366853 -7061428 + (TCTA)n Simple_repeat Simple_repeat 3 55 0 282 29 0 0 chr3_random 1367135 1367170 -7061111 + (TG)n Simple_repeat Simple_repeat 2 36 0 270 320 19 64 chr3_random 1368312 1368468 -7059813 + MLT1J2 LTR MaLR 15 163 -287 25 51 0 0 chr3_random 1369377 1369416 -7058865 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr3_random 1370980 1371007 -7057274 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr3_random 1371023 1371051 -7057230 + AT_rich Low_complexity Low_complexity 1 28 0 5563 131 14 10 chr3_random 1371399 1371899 -7056382 - L1PA16 LINE L1 0 6166 5669 1997 111 31 14 chr3_random 1371899 1372188 -7056093 - AluSq SINE Alu -19 294 1 5563 131 14 10 chr3_random 1372188 1372992 -7055289 - L1PA16 LINE L1 -497 5669 4882 306 245 20 41 chr3_random 1375261 1375359 -7052922 - L1M4 LINE L1 -3783 2363 2268 6225 227 95 55 chr3_random 1375361 1377841 -7050440 - L1MC3 LINE L1 -20 8576 5997 4203 275 41 16 chr3_random 1377978 1379652 -7048629 - L1MC3 LINE L1 -980 5977 4261 327 146 0 0 chr3_random 1379692 1379747 -7048534 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 1989 121 4 0 chr3_random 1379749 1380029 -7048252 - AluSq SINE Alu -32 281 1 2024 238 21 68 chr3_random 1380313 1380512 -7047769 - L1MC3 LINE L1 -5207 1652 1445 2379 64 0 0 chr3_random 1380512 1380809 -7047472 - AluY SINE Alu -14 297 1 2024 238 21 68 chr3_random 1380809 1381319 -7046962 - L1MC3 LINE L1 -5414 1445 976 22071 72 2 4 chr3_random 1381324 1385119 -7043162 - L1PA6 LINE L1 0 6154 2366 1064 168 11 0 chr3_random 1385219 1385404 -7042877 + Tigger1 DNA MER2_type 462 648 -1770 755 173 29 0 chr3_random 1385402 1385541 -7042740 + Tigger1 DNA MER2_type 2276 2418 0 * 812 260 31 14 chr3_random 1385579 1385802 -7042479 - MLT1D LTR MaLR -1 504 278 183 309 29 0 chr3_random 1385827 1385895 -7042386 - MIR SINE MIR -32 230 161 7479 57 27 1 chr3_random 1386031 1387039 -7041242 - L1PA5 LINE L1 -2097 4049 3016 10724 53 0 1 chr3_random 1387039 1389154 -7039127 + L1PA5 LINE L1 4034 6151 -3 21 0 0 0 chr3_random 1389189 1389210 -7039071 + AT_rich Low_complexity Low_complexity 1 21 0 1861 162 3 7 chr3_random 1389283 1389568 -7038713 + AluSx SINE Alu 3 285 -27 211 91 0 0 chr3_random 1389568 1389601 -7038680 + (CAA)n Simple_repeat Simple_repeat 1 180 0 15238 132 34 1 chr3_random 1389616 1389935 -7038346 + L1PA8 LINE L1 2869 3176 -2996 1857 76 52 4 chr3_random 1389935 1390186 -7038095 + AluY SINE Alu 42 304 -7 15238 132 34 1 chr3_random 1390186 1393128 -7035153 + L1PA8 LINE L1 3176 6159 -13 341 208 28 0 chr3_random 1394329 1394401 -7033880 - MER117 DNA MER1_type -106 91 18 341 380 66 0 chr3_random 1395212 1395470 -7032811 + L1M4 LINE L1 3705 3979 -2167 413 208 0 20 chr3_random 1395802 1395903 -7032378 - L1MC5 LINE L1 -50 7911 7813 346 167 0 0 chr3_random 1395966 1396026 -7032255 + L1PB1 LINE L1 4886 4945 -1201 283 263 87 60 chr3_random 1396294 1396560 -7031721 - L1M4 LINE L1 -1391 5457 5185 1241 218 17 14 chr3_random 1396670 1396963 -7031318 + L1MD2 LINE L1 6037 6330 -29 * 6131 120 26 1 chr3_random 1396952 1398020 -7030261 + L1PB1 LINE L1 5063 6151 0 248 369 46 0 chr3_random 1398606 1398736 -7029545 + L1MEc LINE L1 240 375 -6021 482 305 42 23 chr3_random 1398858 1399120 -7029161 + L1M4 LINE L1 3269 3535 -2611 * 1563 189 47 3 chr3_random 1399116 1399476 -7028805 - L1 LINE L1 -939 5207 4832 * 3318 273 167 51 chr3_random 1399458 1401489 -7026792 - L1M4 LINE L1 -4581 2268 2 1259 319 46 14 chr3_random 1401498 1402226 -7026055 + ERVL LTR ERVL 3866 4643 -1121 2794 234 61 31 chr3_random 1402229 1403208 -7025073 - L1MC3 LINE L1 0 7785 6777 2820 221 81 50 chr3_random 1403473 1404337 -7023944 + MER21A LTR ERV1 14 904 -27 627 337 20 16 chr3_random 1404399 1404651 -7023630 + MLT2F LTR ERVL 59 311 -352 652 333 70 17 chr3_random 1404672 1405029 -7023252 + MLT2F LTR ERVL 243 618 -45 5045 143 9 5 chr3_random 1405263 1406555 -7021726 - L1PA13 LINE L1 -4 6810 5498 5302 190 50 2 chr3_random 1406556 1407632 -7020649 + L1P LINE L1 3968 5095 -1051 4747 227 12 10 chr3_random 1407628 1408817 -7019464 - L1PA13 LINE L1 -2784 4013 2823 * 3420 195 0 5 chr3_random 1408817 1409381 -7018900 - L1PA13 LINE L1 -6160 627 67 2128 131 0 0 chr3_random 1409487 1409784 -7018497 - AluSg SINE Alu -8 302 6 26 0 0 0 chr3_random 1409791 1409817 -7018464 + AT_rich Low_complexity Low_complexity 1 26 0 35 41 0 0 chr3_random 1411574 1411623 -7016658 + AT_rich Low_complexity Low_complexity 1 49 0 1945 162 98 18 chr3_random 1411988 1412384 -7015897 - MSTA LTR MaLR 0 428 1 379 95 27 0 chr3_random 1412845 1412919 -7015362 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 70 0 0 chr3_random 1416635 1416678 -7011603 + AT_rich Low_complexity Low_complexity 1 43 0 249 228 54 12 chr3_random 1416726 1416893 -7011388 + (TA)n Simple_repeat Simple_repeat 1 174 0 23 68 0 0 chr3_random 1416918 1416962 -7011319 + AT_rich Low_complexity Low_complexity 1 44 0 36 0 0 0 chr3_random 1417040 1417076 -7011205 + AT_rich Low_complexity Low_complexity 1 36 0 601 256 41 12 chr3_random 1417095 1417337 -7010944 - Charlie2 DNA MER1_type -634 2228 1980 1566 272 55 21 chr3_random 1417342 1417995 -7010286 - L1ME1 LINE L1 -2 6959 6288 2993 268 94 38 chr3_random 1418008 1419433 -7008848 - L1ME1 LINE L1 -1288 5653 4071 1539 191 0 32 chr3_random 1419433 1419747 -7008534 - AluJb SINE Alu -8 304 1 2993 268 94 38 chr3_random 1419747 1420264 -7008017 - L1ME1 LINE L1 -2870 4071 3585 652 278 18 57 chr3_random 1420265 1420546 -7007735 + MER110-int LTR ERV1 2476 2745 -1902 540 284 70 45 chr3_random 1420657 1420970 -7007311 - L1ME1 LINE L1 -5238 1185 865 776 296 87 23 chr3_random 1421157 1421630 -7006651 - L1ME1 LINE L1 -5824 599 97 285 29 0 0 chr3_random 1421641 1421675 -7006606 + (TG)n Simple_repeat Simple_repeat 1 34 0 272 173 87 39 chr3_random 1421700 1421804 -7006477 - Charlie2 DNA MER1_type -868 1994 1886 1293 217 50 7 chr3_random 1421983 1422282 -7005999 - AluJb SINE Alu 0 312 1 21 0 0 0 chr3_random 1422352 1422373 -7005908 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr3_random 1422500 1422534 -7005747 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr3_random 1422937 1422964 -7005317 + AT_rich Low_complexity Low_complexity 1 27 0 1691 161 69 31 chr3_random 1423766 1424115 -7004166 - THE1C LTR MaLR 0 375 14 719 206 50 7 chr3_random 1424110 1424251 -7004030 - LTR35 LTR ERV1 -10 608 462 * 424 171 11 11 chr3_random 1424299 1424387 -7003894 - LTR43 LTR ERV1 -325 277 190 536 311 44 51 chr3_random 1424880 1425083 -7003198 - HERV3 LTR ERV1 -298 4656 4453 1905 166 30 38 chr3_random 1425083 1425450 -7002831 - THE1B LTR MaLR 0 364 1 10975 109 5 13 chr3_random 1425450 1427043 -7001238 - THE1B-int LTR MaLR 0 1580 1 1953 154 42 22 chr3_random 1427043 1427400 -7000881 - THE1B LTR MaLR 0 364 1 536 311 44 51 chr3_random 1427400 1427583 -7000698 - HERV3 LTR ERV1 -498 4456 4271 347 349 0 0 chr3_random 1427941 1428047 -7000234 - HERV3 LTR ERV1 -2139 6287 6182 5126 207 40 53 chr3_random 1428193 1428461 -6999820 - HERV3 LTR ERV1 -234 1936 1666 203 61 30 0 chr3_random 1428461 1428494 -6999787 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5126 207 40 53 chr3_random 1428494 1431019 -6997262 - HERV3 LTR ERV1 -504 1666 1075 784 297 4 26 chr3_random 1431406 1431675 -6996606 - HERV3 LTR ERV1 -5278 668 406 636 220 120 7 chr3_random 1431686 1431836 -6996445 - LTR35 LTR ERV1 0 618 452 499 171 59 40 chr3_random 1431856 1432008 -6996273 - LTR43 LTR ERV1 -258 344 190 181 212 0 0 chr3_random 1432568 1432601 -6995680 - L3b LINE CR1 -2 1581 1549 2306 111 0 0 chr3_random 1432632 1432938 -6995343 - AluSx SINE Alu -6 306 1 2253 193 136 30 chr3_random 1433007 1433671 -6994610 - MER50 LTR ERV1 0 734 1 409 250 96 39 chr3_random 1433699 1433959 -6994322 + L1ME1 LINE L1 4771 5045 -1101 2619 237 89 62 chr3_random 1434066 1434886 -6993395 + MER21B LTR ERV1 1 842 -21 335 239 11 11 chr3_random 1434928 1435020 -6993261 + L1ME2 LINE L1 6064 6155 -9 439 257 86 7 chr3_random 1435176 1435316 -6992965 + L1ME1 LINE L1 5482 5632 -532 3200 217 11 8 chr3_random 1435388 1436024 -6992257 - MER82 DNA MER2_type -6 647 10 1002 290 82 26 chr3_random 1436091 1436556 -6991725 + L1ME1 LINE L1 5669 6159 -7 24 0 0 0 chr3_random 1436560 1436584 -6991697 + AT_rich Low_complexity Low_complexity 1 24 0 393 70 0 0 chr3_random 1436861 1436918 -6991363 + (CA)n Simple_repeat Simple_repeat 1 57 0 7439 88 7 24 chr3_random 1436969 1438045 -6990236 - MER11C LTR ERVK -14 1057 1 2034 84 3 75 chr3_random 1439142 1439475 -6988806 - AluY SINE Alu -2 309 1 563 213 162 22 chr3_random 1439891 1440058 -6988223 + MER58B DNA MER1_type 152 341 0 237 33 0 0 chr3_random 1440385 1440415 -6987866 + (CA)n Simple_repeat Simple_repeat 2 31 0 525 165 25 0 chr3_random 1441494 1441615 -6986666 + CT-rich Low_complexity Low_complexity 1 124 0 1567 168 0 39 chr3_random 1441621 1441906 -6986375 - AluSx SINE Alu -38 274 1 27 0 0 0 chr3_random 1442435 1442462 -6985819 + AT_rich Low_complexity Low_complexity 1 27 0 30 45 0 0 chr3_random 1442561 1442605 -6985676 + AT_rich Low_complexity Low_complexity 1 44 0 248 319 44 22 chr3_random 1442704 1442839 -6985442 - MLT1J LTR MaLR 0 511 374 301 40 20 20 chr3_random 1442909 1442959 -6985322 - L1PA11 LINE L1 0 6174 6125 4409 97 2 2 chr3_random 1442959 1443610 -6984671 - L1PA11 LINE L1 -306 5868 5218 399 290 125 50 chr3_random 1443610 1443907 -6984374 - MLT1J LTR MaLR -192 319 1 359 284 60 37 chr3_random 1444769 1444984 -6983297 + L1M4 LINE L1 2201 2420 -3726 2299 161 26 14 chr3_random 1445675 1446098 -6982183 - MSTA LTR MaLR 0 428 1 351 44 0 0 chr3_random 1446425 1446470 -6981811 + (CA)n Simple_repeat Simple_repeat 2 46 0 1009 236 97 9 chr3_random 1446470 1446686 -6981595 - MER8 DNA MER2_type -2 237 3 231 125 0 0 chr3_random 1446705 1446745 -6981536 + (TA)n Simple_repeat Simple_repeat 2 41 0 603 203 16 31 chr3_random 1446752 1446880 -6981401 - MLT2D LTR ERVL -54 360 235 10591 154 10 17 chr3_random 1446921 1450051 -6978230 + L1MA1 LINE L1 3195 6301 -1 22 0 0 0 chr3_random 1450478 1450500 -6977781 + AT_rich Low_complexity Low_complexity 1 22 0 768 180 187 0 chr3_random 1451726 1452009 -6976272 + MER44D DNA MER2_type 2 603 -2 992 203 23 107 chr3_random 1452638 1452777 -6975504 + MSTD LTR MaLR 1 150 -246 900 87 79 0 chr3_random 1452777 1452904 -6975377 - MER85 DNA T2_type -2 137 1 992 203 23 107 chr3_random 1452904 1453163 -6975118 + MSTD LTR MaLR 150 396 0 252 0 0 0 chr3_random 1453351 1453379 -6974902 + (CA)n Simple_repeat Simple_repeat 2 29 0 429 66 0 0 chr3_random 1453853 1453914 -6974367 + (TG)n Simple_repeat Simple_repeat 2 62 0 263 258 11 0 chr3_random 1454423 1454512 -6973769 + (TA)n Simple_repeat Simple_repeat 2 91 0 259 229 76 59 chr3_random 1455931 1456049 -6972232 + L1MC5 LINE L1 7115 7234 -727 833 211 97 50 chr3_random 1456155 1456558 -6971723 - Charlie5 DNA MER1_type 0 2624 2203 289 284 69 9 chr3_random 1456841 1456957 -6971324 - L2 LINE L2 -684 2630 2508 392 244 107 46 chr3_random 1457053 1457250 -6971031 + MER65B LTR ERV1 312 520 -11 848 205 39 13 chr3_random 1457357 1457586 -6970695 - L1MA7 LINE L1 -1 6290 6056 315 281 36 54 chr3_random 1457598 1457765 -6970516 + L2 LINE L2 3150 3313 0 568 322 85 37 chr3_random 1457785 1458055 -6970226 - L2 LINE L2 -1814 1500 1218 583 300 18 14 chr3_random 1458168 1458391 -6969890 - L1ME3A LINE L1 -107 6063 5840 3269 82 37 0 chr3_random 1458933 1459370 -6968911 + MLT2A2 LTR ERVL 1 453 0 2292 95 7 3 chr3_random 1459710 1460016 -6968265 + AluSc SINE Alu 3 309 0 284 85 43 0 chr3_random 1460772 1460819 -6967462 + T-rich Low_complexity Low_complexity 2 50 0 29 0 0 0 chr3_random 1461206 1461235 -6967046 + AT_rich Low_complexity Low_complexity 1 29 0 1615 97 0 4 chr3_random 1462148 1462374 -6965907 - LTR12 LTR ERV1 0 714 490 391 185 33 0 chr3_random 1462381 1462473 -6965808 - LTR30 LTR ERV1 -80 642 548 788 66 12 0 chr3_random 1462473 1462637 -6965644 - LTR12 LTR ERV1 -433 281 1 4622 104 3 0 chr3_random 1462637 1463278 -6965003 - HERV9 LTR ERV1 0 8399 7757 1764 95 16 27 chr3_random 1463273 1463676 -6964605 - Harlequin LTR ERV1 -5176 1720 1275 * 1610 134 62 15 chr3_random 1463663 1464011 -6964270 - Harlequin LTR ERV1 -5906 990 735 * 13291 116 16 7 chr3_random 1463982 1467000 -6961281 - Harlequin LTR ERV1 -5434 2965 1 3742 86 319 0 chr3_random 1467000 1467626 -6960655 - LTR12 LTR ERV1 0 826 1 33 0 0 0 chr3_random 1468465 1468498 -6959783 + AT_rich Low_complexity Low_complexity 1 33 0 2169 106 3 19 chr3_random 1469063 1469375 -6958906 - AluY SINE Alu -4 307 1 1255 229 55 28 chr3_random 1470627 1470989 -6957292 + MLT1A2 LTR MaLR 1 372 -2 2077 122 3 0 chr3_random 1471017 1471312 -6956969 + AluSp SINE Alu 1 296 -17 1569 251 106 25 chr3_random 1471523 1471650 -6956631 + LTR26 LTR ERV1 51 166 -437 230 0 33 0 chr3_random 1471650 1471680 -6956601 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1569 251 106 25 chr3_random 1471680 1472061 -6956220 + LTR26 LTR ERV1 166 600 -3 1984 146 0 9 chr3_random 1473802 1474117 -6954164 - AluSx SINE Alu 0 312 1 451 317 67 0 chr3_random 1474801 1474981 -6953300 - LTR16A1 LTR ERVL 0 457 266 2605 99 3 0 chr3_random 1475149 1475503 -6952778 - THE1A LTR MaLR 0 355 1 10836 107 15 0 chr3_random 1475503 1477060 -6951221 - THE1A-int LTR MaLR 0 1580 1 2430 88 38 0 chr3_random 1477060 1477402 -6950879 - THE1A LTR MaLR 0 355 1 729 259 144 9 chr3_random 1477518 1477910 -6950371 - MLT1D LTR MaLR 0 505 1 297 0 0 0 chr3_random 1478450 1478483 -6949798 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 28 0 0 0 chr3_random 1478512 1478540 -6949741 + AT_rich Low_complexity Low_complexity 1 28 0 366 0 0 0 chr3_random 1478540 1478585 -6949696 - L1PA3 LINE L1 -3 6152 6108 1310 223 113 40 chr3_random 1478934 1479405 -6948876 + MLT1D LTR MaLR 1 505 0 369 338 66 33 chr3_random 1479416 1479629 -6948652 - MLT1K LTR MaLR -358 230 11 238 314 0 14 chr3_random 1479774 1479844 -6948437 + CT-rich Low_complexity Low_complexity 5 73 0 200 357 18 18 chr3_random 1480644 1480756 -6947525 + MER5A DNA MER1_type 1 112 -77 21 71 0 0 chr3_random 1481884 1481926 -6946355 + AT_rich Low_complexity Low_complexity 1 42 0 225 65 0 0 chr3_random 1484732 1484763 -6943518 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 91 0 0 chr3_random 1484763 1484796 -6943485 + (CAT)n Simple_repeat Simple_repeat 2 34 0 294 87 0 0 chr3_random 1485134 1485180 -6943101 + MADE1 DNA Mariner 2 47 -33 2280 71 0 19 chr3_random 1486496 1486806 -6941475 - AluY SINE Alu -7 304 1 1483 106 55 0 chr3_random 1487937 1488155 -6940126 - MER30 DNA MER1_type 0 230 1 372 323 75 16 chr3_random 1488419 1488605 -6939676 - MIR SINE MIR -10 252 56 235 237 26 40 chr3_random 1488834 1488910 -6939371 - MLT1J LTR MaLR -61 450 376 2260 98 3 0 chr3_random 1488990 1489287 -6938994 - AluSp SINE Alu -13 300 3 303 284 204 17 chr3_random 1489377 1489553 -6938728 - MLT1J LTR MaLR -302 209 1 442 182 0 0 chr3_random 1489653 1489741 -6938540 + L1MA7 LINE L1 6199 6286 -5 1227 171 41 0 chr3_random 1489748 1489994 -6938287 + MER33 DNA MER1_type 53 308 -16 4656 189 21 20 chr3_random 1490010 1491593 -6936688 - L1MA7 LINE L1 -12 6279 4695 2335 196 8 43 chr3_random 1492974 1493881 -6934400 + L1MA6 LINE L1 4863 5736 -564 427 222 30 0 chr3_random 1493879 1493978 -6934303 + L1MA6 LINE L1 6195 6296 -4 * 51 42 0 0 chr3_random 1493978 1494050 -6934231 + AT_rich Low_complexity Low_complexity 1 72 0 24 0 0 0 chr3_random 1494076 1494100 -6934181 + AT_rich Low_complexity Low_complexity 1 24 0 387 100 23 46 chr3_random 1494950 1495080 -6933201 + (TA)n Simple_repeat Simple_repeat 1 127 0 792 187 34 17 chr3_random 1495571 1495825 -6932456 + MLT1C LTR MaLR 1 292 -175 961 165 85 0 chr3_random 1495846 1496022 -6932259 - LTR47A LTR ERVL 0 452 262 21 0 0 0 chr3_random 1496082 1496103 -6932178 + AT_rich Low_complexity Low_complexity 1 21 0 265 216 304 0 chr3_random 1496920 1497022 -6931259 + MER94 DNA DNA 1 133 -1 939 230 25 5 chr3_random 1497847 1498043 -6930238 + MLT1E1 LTR MaLR 3 202 -452 685 284 72 8 chr3_random 1498092 1498342 -6929939 + MLT1E1 LTR MaLR 386 651 -3 6793 148 25 28 chr3_random 1499574 1499796 -6928485 - Tigger3b DNA MER2_type -1799 1229 1008 1881 155 38 19 chr3_random 1499796 1500164 -6928117 - THE1C LTR MaLR 0 375 1 6793 148 25 28 chr3_random 1500164 1501174 -6927107 - Tigger3b DNA MER2_type -2020 1008 1 5435 246 41 3 chr3_random 1501219 1502901 -6925380 - L1M4c LINE L1 -2029 4703 2918 363 260 0 0 chr3_random 1502945 1503022 -6925259 - Tigger7 DNA MER2_type -613 92 16 3661 236 43 8 chr3_random 1503054 1504107 -6924174 - L1M4c LINE L1 -4516 2137 1287 3455 269 33 6 chr3_random 1504183 1505012 -6923269 - L1M4c LINE L1 -5360 1293 443 406 351 37 17 chr3_random 1505032 1505331 -6922950 - L1 LINE L1 -5584 307 3 333 259 71 40 chr3_random 1505334 1505631 -6922650 + L1MEc LINE L1 1961 2266 -4130 * 541 261 50 40 chr3_random 1505627 1505905 -6922376 + L1MEc LINE L1 2198 2458 -3757 639 227 40 4 chr3_random 1505971 1506142 -6922139 - MER58B DNA MER1_type -15 326 38 4899 123 20 8 chr3_random 1506142 1506900 -6921381 + L1PA15 LINE L1 5381 6147 -18 341 257 14 0 chr3_random 1506900 1506970 -6921311 - MER58A DNA MER1_type -36 71 1 1423 211 33 0 chr3_random 1508369 1508668 -6919613 - AluJb SINE Alu -3 309 1 890 86 9 0 chr3_random 1508881 1508997 -6919284 - AluSq/x SINE Alu -184 129 13 1061 159 0 0 chr3_random 1508997 1509160 -6919121 + AluSg/x SINE Alu 136 298 -12 26 30 0 0 chr3_random 1510197 1510230 -6918051 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr3_random 1510554 1510575 -6917706 + AT_rich Low_complexity Low_complexity 1 21 0 1609 90 0 0 chr3_random 1511064 1511307 -6916974 + AluY SINE Alu 73 315 0 1602 199 7 3 chr3_random 1511939 1512225 -6916056 - AluJo SINE Alu -25 287 1 315 246 55 36 chr3_random 1512363 1512473 -6915808 + MIR SINE MIR 95 206 -56 301 219 10 62 chr3_random 1512813 1512909 -6915372 - L1MC4 LINE L1 -1337 6705 6615 29 28 0 0 chr3_random 1513353 1513389 -6914892 + AT_rich Low_complexity Low_complexity 1 36 0 4055 100 7 11 chr3_random 1513401 1514068 -6914213 + L1P LINE L1 4762 5426 -705 2622 197 23 41 chr3_random 1514291 1515010 -6913271 + L1M3 LINE L1 4780 5485 -698 195 42 0 0 chr3_random 1515010 1515034 -6913247 + (GA)n Simple_repeat Simple_repeat 1 24 0 2622 197 23 41 chr3_random 1515034 1515190 -6913091 + L1M3 LINE L1 5485 5642 -541 384 161 0 37 chr3_random 1515450 1515531 -6912750 + L1MA2 LINE L1 6218 6295 -9 23 54 0 0 chr3_random 1515809 1515846 -6912435 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr3_random 1517885 1517921 -6910360 + AT_rich Low_complexity Low_complexity 1 36 0 645 275 115 79 chr3_random 1517998 1518565 -6909716 + MLT1G LTR MaLR 2 588 -2 26 30 0 0 chr3_random 1518695 1518728 -6909553 + AT_rich Low_complexity Low_complexity 1 33 0 1107 145 60 55 chr3_random 1518744 1518979 -6909302 - HSMAR2 DNA Mariner -2 1300 1065 597 151 0 0 chr3_random 1518990 1519083 -6909198 - FRAM SINE Alu -20 156 64 2200 115 0 7 chr3_random 1520066 1520370 -6907911 + AluSq SINE Alu 1 302 -11 362 255 15 12 chr3_random 1521358 1521621 -6906660 + (TA)n Simple_repeat Simple_repeat 1 264 0 1574 330 38 18 chr3_random 1521733 1522810 -6905471 + HERV16 LTR ERVL 1031 2218 -2778 235 131 36 24 chr3_random 1522844 1522928 -6905353 + (TA)n Simple_repeat Simple_repeat 2 86 0 430 287 151 44 chr3_random 1523000 1523049 -6905232 + HERV16 LTR ERVL 2307 2349 -2647 1958 153 39 28 chr3_random 1523049 1523409 -6904872 + THE1B LTR MaLR 1 364 0 430 287 151 44 chr3_random 1523409 1523610 -6904671 + HERV16 LTR ERVL 2349 2584 -2412 1129 180 0 19 chr3_random 1523661 1523872 -6904409 - AluJb SINE Alu -1 311 105 5757 220 34 7 chr3_random 1524875 1526094 -6902187 - L1M1 LINE L1 -6295 1270 20 22 0 0 0 chr3_random 1526560 1526582 -6901699 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr3_random 1526923 1526948 -6901333 + (TTG)n Simple_repeat Simple_repeat 3 27 0 413 359 42 35 chr3_random 1527554 1528103 -6900178 + HAL1b LINE L1 100 652 -696 3278 99 2 2 chr3_random 1528219 1528664 -6899617 - MLT2A2 LTR ERVL -8 445 1 559 308 67 36 chr3_random 1528664 1529021 -6899260 + MLT1J LTR MaLR 144 511 0 26 0 0 0 chr3_random 1529356 1529382 -6898899 + AT_rich Low_complexity Low_complexity 1 26 0 1941 127 0 69 chr3_random 1529447 1529779 -6898502 - AluSx SINE Alu -3 309 1 1596 171 66 30 chr3_random 1529820 1530182 -6898099 - THE1C LTR MaLR 0 375 1 740 104 9 9 chr3_random 1532820 1532935 -6895346 + L1PA10 LINE L1 6053 6167 -1 31 88 0 0 chr3_random 1533016 1533096 -6895185 + AT_rich Low_complexity Low_complexity 1 80 0 21 36 0 0 chr3_random 1534834 1534862 -6893419 + AT_rich Low_complexity Low_complexity 1 28 0 1475 32 48 0 chr3_random 1536130 1536316 -6891965 + L1PA4 LINE L1 5960 6154 -1 21 71 0 0 chr3_random 1536698 1536740 -6891541 + AT_rich Low_complexity Low_complexity 1 42 0 1340 167 37 41 chr3_random 1537067 1537336 -6890945 + AluJo SINE Alu 34 301 -11 356 0 23 0 chr3_random 1537833 1537877 -6890404 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4223 141 36 42 chr3_random 1538025 1538831 -6889450 - Tigger4(Zombi) DNA MER2_type 0 2731 1931 9935 145 16 20 chr3_random 1538837 1540513 -6887768 - Tigger4(Zombi) DNA MER2_type -1062 1669 1 1985 164 0 0 chr3_random 1540761 1541073 -6887208 - AluSx SINE Alu 0 312 1 33 56 0 0 chr3_random 1541129 1541183 -6887098 + AT_rich Low_complexity Low_complexity 1 54 0 227 200 0 0 chr3_random 1541409 1541449 -6886832 + MLT2D LTR ERVL 1 40 -374 2854 234 52 74 chr3_random 1541525 1543099 -6885182 + L1MCb LINE L1 9 1620 -4849 2068 320 98 18 chr3_random 1543232 1544422 -6883859 - L2 LINE L2 -154 3159 1869 2226 104 3 0 chr3_random 1544423 1544722 -6883559 - AluSc SINE Alu -9 300 1 625 319 32 32 chr3_random 1544766 1545048 -6883233 - L2 LINE L2 -1915 1399 1118 359 287 191 24 chr3_random 1545319 1545528 -6882753 - MIR SINE MIR 0 262 19 15206 228 28 30 chr3_random 1545593 1545712 -6882569 + L1PA15 LINE L1 1 119 -6697 2653 29 0 3 chr3_random 1545712 1546021 -6882260 + AluY SINE Alu 1 308 -3 15206 228 28 30 chr3_random 1546021 1546761 -6881520 + L1PA15 LINE L1 119 859 -5957 192 40 0 0 chr3_random 1546761 1546786 -6881495 + (TG)n Simple_repeat Simple_repeat 1 25 0 15206 228 28 30 chr3_random 1546786 1549953 -6878328 + L1PA15 LINE L1 859 4196 -2620 2809 13 0 0 chr3_random 1549953 1550264 -6878017 + AluY SINE Alu 1 311 0 15206 228 28 30 chr3_random 1550264 1552872 -6875409 + L1PA15 LINE L1 4196 6809 -7 2454 53 0 3 chr3_random 1553803 1554103 -6874178 + AluY SINE Alu 1 299 -12 27 87 0 0 chr3_random 1554222 1554291 -6873990 + AT_rich Low_complexity Low_complexity 1 69 0 29 84 0 0 chr3_random 1554593 1554664 -6873617 + AT_rich Low_complexity Low_complexity 1 71 0 25 83 0 0 chr3_random 1554685 1554745 -6873536 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr3_random 1555010 1555033 -6873248 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3_random 1555085 1555106 -6873175 + AT_rich Low_complexity Low_complexity 1 21 0 255 330 9 0 chr3_random 1555199 1555311 -6872970 + L1ME LINE L1 5704 5816 -305 1827 111 4 4 chr3_random 1555492 1555753 -6872528 + AluSq SINE Alu 24 284 -29 222 80 60 0 chr3_random 1555762 1555812 -6872469 + (TA)n Simple_repeat Simple_repeat 2 54 0 303 175 62 38 chr3_random 1555812 1555892 -6872389 + L1MCa LINE L1 1992 2073 -4353 23 0 0 0 chr3_random 1556772 1556795 -6871486 + AT_rich Low_complexity Low_complexity 1 23 0 5808 76 3 0 chr3_random 1557149 1557908 -6870373 + L1PA8 LINE L1 5396 6156 -16 1686 187 22 61 chr3_random 1558112 1558524 -6869757 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3_random 1558685 1558707 -6869574 + AT_rich Low_complexity Low_complexity 1 22 0 1832 188 44 29 chr3_random 1558846 1559229 -6869052 + MSTD LTR MaLR 8 396 0 1798 166 3 0 chr3_random 1559390 1559698 -6868583 + AluSc SINE Alu 1 309 0 23 68 0 0 chr3_random 1560275 1560319 -6867962 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3_random 1560673 1560694 -6867587 + AT_rich Low_complexity Low_complexity 1 21 0 323 225 12 12 chr3_random 1561562 1561642 -6866639 - MLT1J LTR MaLR -6 505 426 1623 191 7 0 chr3_random 1562192 1562501 -6865780 + AluJb SINE Alu 1 311 -1 258 346 42 78 chr3_random 1563293 1563679 -6864602 + MLT1J2 LTR MaLR 38 409 0 1639 209 25 22 chr3_random 1564163 1564527 -6863754 + MLT1A1 LTR MaLR 1 365 0 644 233 37 0 chr3_random 1564918 1565081 -6863200 + MER105 DNA DNA 1 169 -35 638 283 72 29 chr3_random 1565757 1566036 -6862245 - LTR16C LTR ERVL -33 458 168 195 349 60 34 chr3_random 1566400 1566549 -6861732 + L2 LINE L2 2591 2743 -571 225 352 136 0 chr3_random 1567945 1568033 -6860248 + L3 LINE CR1 1471 1570 -7 276 30 0 0 chr3_random 1569116 1569149 -6859132 + (A)n Simple_repeat Simple_repeat 1 33 0 2277 50 4 0 chr3_random 1569285 1569564 -6858717 - AluY SINE Alu -14 297 18 243 303 73 18 chr3_random 1570069 1570178 -6858103 + MIR SINE MIR 50 164 -98 244 291 55 73 chr3_random 1570425 1570590 -6857691 - MIR SINE MIR -56 206 45 496 42 28 0 chr3_random 1571100 1571171 -6857110 + (TA)n Simple_repeat Simple_repeat 1 73 0 296 226 0 0 chr3_random 1571883 1571936 -6856345 - MIR SINE MIR -6 256 204 2120 88 7 10 chr3_random 1572577 1572885 -6855396 + L1PA8 LINE L1 5864 6170 -2 395 301 176 25 chr3_random 1572946 1573185 -6855096 + LTR33 LTR ERVL 30 304 -217 320 293 42 42 chr3_random 1573347 1573514 -6854767 + L1MDa LINE L1 2439 2605 -3935 814 276 112 55 chr3_random 1573643 1574150 -6854131 + MLT1H LTR MaLR 14 549 0 13951 196 31 21 chr3_random 1578112 1579894 -6848387 - L1MA4 LINE L1 -1 6481 4718 297 0 0 0 chr3_random 1579894 1579927 -6848354 + (TG)n Simple_repeat Simple_repeat 2 34 0 13951 196 31 21 chr3_random 1579927 1580168 -6848113 - L1MA4 LINE L1 -1764 4718 4481 2248 107 3 0 chr3_random 1580168 1580478 -6847803 - AluY SINE Alu 0 311 1 13951 196 31 21 chr3_random 1580478 1581663 -6846618 - L1MA4 LINE L1 -2001 4481 3309 1420 221 10 7 chr3_random 1581663 1581961 -6846320 - AluJo SINE Alu -11 301 3 13951 196 31 21 chr3_random 1581961 1582036 -6846245 - L1MA4 LINE L1 -3173 3309 3236 2050 135 0 7 chr3_random 1582036 1582325 -6845956 - AluSp SINE Alu -26 287 1 13951 196 31 21 chr3_random 1582325 1584773 -6843508 - L1MA4 LINE L1 -3246 3236 711 406 360 63 14 chr3_random 1584775 1584997 -6843284 - L1MDa LINE L1 -4643 1897 1665 1045 262 100 29 chr3_random 1585005 1585596 -6842685 - L1M4 LINE L1 -1218 4928 4296 476 259 71 16 chr3_random 1585642 1585855 -6842426 + L1ME3A LINE L1 5658 5875 -318 1535 173 63 0 chr3_random 1586229 1586500 -6841781 - AluJb SINE Alu -12 300 13 208 143 0 0 chr3_random 1586854 1586889 -6841392 + (T)n Simple_repeat Simple_repeat 1 35 0 267 335 99 6 chr3_random 1588347 1588508 -6839773 - HERV16 LTR ERVL -4818 178 3 1130 276 86 25 chr3_random 1588510 1588610 -6839671 - LTR16A1 LTR ERVL 0 457 365 219 88 0 0 chr3_random 1588610 1588644 -6839637 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1130 276 86 25 chr3_random 1588644 1588948 -6839333 - LTR16A1 LTR ERVL -92 365 28 275 308 151 38 chr3_random 1591827 1591986 -6836295 - MIR SINE MIR -27 235 59 2148 108 3 3 chr3_random 1592030 1592327 -6835954 - AluSp SINE Alu -13 300 4 197 275 168 42 chr3_random 1592727 1592894 -6835387 + L2 LINE L2 3121 3308 -5 1516 198 120 33 chr3_random 1592947 1593372 -6834909 + MLT1C LTR MaLR 6 467 0 183 371 57 16 chr3_random 1593448 1593572 -6834709 - L2 LINE L2 -42 3230 3102 241 294 24 12 chr3_random 1593805 1593890 -6834391 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 1982 126 0 3 chr3_random 1593973 1594290 -6833991 - AluSx SINE Alu 0 316 1 2137 92 11 7 chr3_random 1595093 1595415 -6832866 + AluSc SINE Alu 1 323 0 220 372 12 0 chr3_random 1596585 1596671 -6831610 - MIR3 SINE MIR -41 167 81 27 49 0 0 chr3_random 1598000 1598041 -6830240 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr3_random 1598061 1598083 -6830198 + AT_rich Low_complexity Low_complexity 1 22 0 240 253 61 20 chr3_random 1599125 1599224 -6829057 + MIR SINE MIR 119 221 -41 24 32 0 0 chr3_random 1599254 1599285 -6828996 + AT_rich Low_complexity Low_complexity 1 31 0 189 282 167 0 chr3_random 1599312 1599390 -6828891 - L2 LINE L2 -270 3043 2953 369 386 73 26 chr3_random 1599457 1599799 -6828482 - L2 LINE L2 -475 2839 2482 335 209 0 22 chr3_random 1600297 1600388 -6827893 + (CACG)n Simple_repeat Simple_repeat 2 90 0 215 338 0 0 chr3_random 1600729 1600800 -6827481 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 28 48 0 0 chr3_random 1600825 1600867 -6827414 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr3_random 1600974 1601004 -6827277 + AT_rich Low_complexity Low_complexity 1 30 0 368 295 123 57 chr3_random 1601174 1601257 -6827024 - MIR SINE MIR -19 243 167 1596 179 135 49 chr3_random 1601257 1601687 -6826594 + MLT1C LTR MaLR 1 467 0 368 295 123 57 chr3_random 1601687 1601830 -6826451 - MIR SINE MIR -95 167 2 23 33 0 0 chr3_random 1602002 1602032 -6826249 + AT_rich Low_complexity Low_complexity 1 30 0 2090 130 19 30 chr3_random 1602515 1602883 -6825398 + THE1B LTR MaLR 1 364 0 10916 109 11 11 chr3_random 1602883 1604457 -6823824 + THE1B-int LTR MaLR 1 1574 -6 2018 161 14 22 chr3_random 1604462 1604829 -6823452 + THE1B LTR MaLR 1 364 0 254 390 18 30 chr3_random 1605014 1605178 -6823103 - MIR3 SINE MIR -41 167 6 502 111 0 12 chr3_random 1607098 1607179 -6821102 + MADE1 DNA Mariner 1 80 0 1663 172 128 31 chr3_random 1607412 1607802 -6820479 + MSTA LTR MaLR 1 428 0 2010 169 37 3 chr3_random 1608196 1608522 -6819759 - MER21B LTR ERV1 -373 490 154 9084 164 21 41 chr3_random 1608533 1610261 -6818020 - MER21-int LTR ERV1 -74 4117 2424 231 216 257 0 chr3_random 1610350 1610424 -6817857 - L2 LINE L2 -4 3309 3217 24 32 0 0 chr3_random 1610977 1611008 -6817273 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3_random 1611024 1611053 -6817228 + AT_rich Low_complexity Low_complexity 1 29 0 1504 83 0 23 chr3_random 1611552 1611770 -6816511 + AluY SINE Alu 96 308 -3 25 65 0 0 chr3_random 1611992 1612038 -6816243 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr3_random 1612780 1612805 -6815476 + AT_rich Low_complexity Low_complexity 1 25 0 1343 282 54 5 chr3_random 1614625 1615068 -6813213 - MLT1F LTR MaLR 0 542 39 323 262 16 118 chr3_random 1615328 1615515 -6812766 - MLT1F-int LTR MaLR -240 1131 964 2037 214 72 4 chr3_random 1615918 1616389 -6811892 + MLT1D LTR MaLR 1 503 -2 408 276 75 30 chr3_random 1616454 1616653 -6811628 - MLT1F-int LTR MaLR -765 606 399 352 339 33 0 chr3_random 1616716 1616837 -6811444 - MLT1F LTR MaLR -404 138 14 1902 207 3 8 chr3_random 1616959 1617326 -6810955 - MLT1A1 LTR MaLR 0 365 1 219 69 0 0 chr3_random 1617330 1617359 -6810922 + (TG)n Simple_repeat Simple_repeat 1 29 0 202 153 35 24 chr3_random 1617407 1617492 -6810789 + (TA)n Simple_repeat Simple_repeat 2 87 0 259 177 26 53 chr3_random 1617493 1617606 -6810675 + (TTATA)n Simple_repeat Simple_repeat 1 110 0 * 276 162 40 14 chr3_random 1617533 1617607 -6810674 + (TATAA)n Simple_repeat Simple_repeat 5 80 0 242 233 11 11 chr3_random 1618089 1618179 -6810102 + T-rich Low_complexity Low_complexity 3 92 0 522 364 32 5 chr3_random 1620006 1620226 -6808055 + L2 LINE L2 2432 2657 -657 286 187 110 33 chr3_random 1620278 1620369 -6807912 - Charlie4 DNA MER1_type -39 1922 1825 236 359 170 0 chr3_random 1620409 1620621 -6807660 + L2 LINE L2 2708 2955 -359 1145 201 102 35 chr3_random 1622073 1622356 -6805925 + AluJo SINE Alu 1 302 0 273 135 0 0 chr3_random 1622356 1622408 -6805873 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 267 343 9 30 chr3_random 1623227 1623457 -6804824 + L1PA12 LINE L1 143 1051 -6534 2572 170 64 59 chr3_random 1624203 1624768 -6803513 + L1M3 LINE L1 4772 5333 -847 2084 138 0 6 chr3_random 1624768 1625080 -6803201 - AluY SINE Alu 0 311 2 2572 170 64 59 chr3_random 1625080 1625206 -6803075 + L1M3 LINE L1 5333 5469 -711 3904 154 26 23 chr3_random 1625206 1625944 -6802337 + L1PA15 LINE L1 5418 6157 -8 2572 170 64 59 chr3_random 1625944 1625963 -6802318 + L1M3 LINE L1 5469 5486 -694 30 45 0 0 chr3_random 1626280 1626324 -6801957 + AT_rich Low_complexity Low_complexity 1 44 0 417 39 0 0 chr3_random 1626870 1626921 -6801360 + (TG)n Simple_repeat Simple_repeat 2 52 0 37 39 0 0 chr3_random 1627597 1627648 -6800633 + AT_rich Low_complexity Low_complexity 1 51 0 988 272 131 22 chr3_random 1627688 1628008 -6800273 + L1MDa LINE L1 420 774 -5766 265 227 0 31 chr3_random 1628235 1628332 -6799949 + GA-rich Low_complexity Low_complexity 3 96 0 1783 174 47 19 chr3_random 1628739 1629102 -6799179 + THE1C LTR MaLR 1 373 -2 6485 158 58 2 chr3_random 1629104 1630234 -6798047 + THE1C-int LTR MaLR 1 1193 -387 1070 196 34 17 chr3_random 1630235 1630470 -6797811 + THE1C LTR MaLR 137 375 0 414 219 42 0 chr3_random 1630655 1630751 -6797530 - L1MC1 LINE L1 -1 6332 6233 * 1808 168 12 75 chr3_random 1630741 1631152 -6797129 - L1MC/D LINE L1 -655 5689 5305 443 127 0 42 chr3_random 1631153 1631224 -6797057 + AluS SINE Alu 223 290 -22 838 250 16 16 chr3_random 1631225 1631473 -6796808 - L1MC/D LINE L1 -832 5314 5067 39 50 0 0 chr3_random 1632459 1632519 -6795762 + AT_rich Low_complexity Low_complexity 1 60 0 239 222 0 0 chr3_random 1632909 1632954 -6795327 + MLT1I LTR MaLR 86 130 -279 393 22 0 0 chr3_random 1633292 1633338 -6794943 + (TG)n Simple_repeat Simple_repeat 1 46 0 1900 162 17 17 chr3_random 1633352 1633703 -6794578 - Tigger2a DNA MER2_type -38 396 46 1053 172 39 34 chr3_random 1633725 1633929 -6794352 + MER7C DNA MER2_type 14 218 -384 1306 120 70 0 chr3_random 1634330 1634530 -6793751 + MER30 DNA MER1_type 17 230 0 * 1904 164 59 13 chr3_random 1634530 1634900 -6793381 + MER7C DNA MER2_type 212 598 -5 29 28 0 0 chr3_random 1634920 1634956 -6793325 + AT_rich Low_complexity Low_complexity 1 36 0 199 133 17 33 chr3_random 1634967 1635027 -6793254 + (TATG)n Simple_repeat Simple_repeat 2 60 0 211 200 0 0 chr3_random 1636294 1636329 -6791952 + (TATG)n Simple_repeat Simple_repeat 4 38 0 399 41 0 0 chr3_random 1636329 1636378 -6791903 + (GA)n Simple_repeat Simple_repeat 2 50 0 581 165 0 0 chr3_random 1636378 1636475 -6791806 - AluSg/x SINE Alu -40 270 174 1236 230 104 56 chr3_random 1636478 1636891 -6791390 + MLT2B1 LTR ERVL 10 442 -78 306 0 0 0 chr3_random 1636900 1636934 -6791347 + (CA)n Simple_repeat Simple_repeat 2 35 0 410 313 70 68 chr3_random 1636936 1637291 -6790990 - LTR33A LTR ERVL -167 356 1 4057 46 0 4 chr3_random 1637304 1637806 -6790475 + L1PA5 LINE L1 5650 6149 -5 25 0 0 0 chr3_random 1637962 1637987 -6790294 + AT_rich Low_complexity Low_complexity 1 25 0 474 361 94 14 chr3_random 1638080 1638368 -6789913 - L2 LINE L2 -421 2893 2583 1946 212 60 54 chr3_random 1638435 1638688 -6789593 + MLT1D LTR MaLR 7 266 -239 237 33 0 0 chr3_random 1638688 1638718 -6789563 + (GA)n Simple_repeat Simple_repeat 1 30 0 1946 212 60 54 chr3_random 1638718 1638960 -6789321 + MLT1D LTR MaLR 266 505 0 254 339 136 53 chr3_random 1638971 1639257 -6789024 - L2 LINE L2 -801 2513 2171 1695 140 75 10 chr3_random 1639257 1639550 -6788731 - AluSx SINE Alu 0 312 1 254 339 136 53 chr3_random 1639550 1639735 -6788546 - L2 LINE L2 -1143 2171 2003 550 131 0 13 chr3_random 1639741 1639873 -6788408 - MER107 DNA MER1_type 0 197 1 488 187 11 0 chr3_random 1640288 1640379 -6787902 + MLT2D LTR ERVL 1 92 -322 506 16 16 0 chr3_random 1640398 1640461 -6787820 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 233 118 0 0 chr3_random 1640478 1640512 -6787769 + MLT2C1 LTR ERVL 353 386 -11 1493 191 0 32 chr3_random 1641626 1641909 -6786372 + AluJo SINE Alu 1 274 -38 21 57 0 0 chr3_random 1643409 1643444 -6784837 + AT_rich Low_complexity Low_complexity 1 35 0 1664 173 58 79 chr3_random 1644149 1644225 -6784056 + MLT1B LTR MaLR 1 77 -313 1516 224 36 14 chr3_random 1644225 1644582 -6783699 + MER47A DNA MER2_type 1 365 -1 1664 173 58 79 chr3_random 1644582 1644899 -6783382 + MLT1B LTR MaLR 77 386 -4 1780 154 0 3 chr3_random 1645041 1645326 -6782955 + AluSg SINE Alu 22 305 -5 289 291 89 38 chr3_random 1646074 1646366 -6781915 + L1MCc LINE L1 1129 1435 -4988 715 237 83 26 chr3_random 1646404 1646836 -6781445 + L1ME1 LINE L1 4965 5423 -743 520 197 164 7 chr3_random 1646838 1646990 -6781291 + L1ME1 LINE L1 5511 5686 -480 671 306 41 4 chr3_random 1646995 1647240 -6781041 + L1ME1 LINE L1 5893 6146 -20 1353 183 12 43 chr3_random 1647258 1647603 -6780678 + L1MA3 LINE L1 5972 6305 0 360 301 22 11 chr3_random 1647615 1647798 -6780483 + L1MCc LINE L1 3105 3289 -3652 2550 194 51 12 chr3_random 1647960 1648546 -6779735 + L1MC1 LINE L1 5724 6332 -1 236 167 19 148 chr3_random 1648534 1648642 -6779639 + L1MCc LINE L1 3480 3573 -3368 * 4697 187 13 126 chr3_random 1648638 1650017 -6778264 - L1P4 LINE L1 -3264 2882 1659 * 11079 199 11 18 chr3_random 1650006 1652449 -6775832 + L1P4 LINE L1 2880 5306 -840 1127 130 73 0 chr3_random 1652452 1652668 -6775613 + L1P4 LINE L1 5369 5610 -556 4163 132 22 1 chr3_random 1652768 1653444 -6774837 + L1PA13 LINE L1 5466 6155 -8 249 117 33 50 chr3_random 1653468 1653528 -6774753 + L1MCc LINE L1 3557 3615 -3326 * 599 265 30 19 chr3_random 1653521 1653785 -6774496 + L1M4 LINE L1 4828 5094 -1052 486 277 82 11 chr3_random 1653796 1654063 -6774218 - L1MDa LINE L1 -4559 1981 1696 431 295 63 34 chr3_random 1654139 1654346 -6773935 + L1MC4 LINE L1 6687 6899 -1143 * 6771 188 16 12 chr3_random 1654338 1655212 -6773069 + L1P5 LINE L1 3880 4749 -1407 1716 167 7 23 chr3_random 1655212 1655512 -6772769 + AluJb SINE Alu 1 295 -17 6771 188 16 12 chr3_random 1655512 1656377 -6771904 + L1P5 LINE L1 4749 5625 -531 2115 162 3 3 chr3_random 1656400 1656770 -6771511 - L1P LINE L1 -1228 4918 4549 238 301 58 6 chr3_random 1656830 1657003 -6771278 + L1MC5 LINE L1 7261 7442 -519 2275 72 10 16 chr3_random 1659479 1659785 -6768496 + AluY SINE Alu 1 304 -7 288 267 12 0 chr3_random 1659845 1659931 -6768350 + MER117 DNA MER1_type 17 103 -94 2338 203 25 6 chr3_random 1660209 1660688 -6767593 + Tigger1 DNA MER2_type 1 488 -1930 329 207 13 0 chr3_random 1660788 1660938 -6767343 + (TA)n Simple_repeat Simple_repeat 1 152 0 356 89 69 0 chr3_random 1660994 1661095 -6767186 + (TA)n Simple_repeat Simple_repeat 1 108 0 368 338 42 13 chr3_random 1661405 1661642 -6766639 + HERVL LTR ERVL 4705 4948 -706 576 375 48 12 chr3_random 1662188 1662519 -6765762 + LTR16A LTR ERVL 9 351 -99 236 237 0 26 chr3_random 1663492 1663568 -6764713 + (TA)n Simple_repeat Simple_repeat 2 75 0 355 317 17 61 chr3_random 1663889 1664069 -6764212 + L2 LINE L2 2615 2786 -528 1889 179 56 3 chr3_random 1664075 1664261 -6764020 - MLT1B LTR MaLR 0 390 215 387 0 0 0 chr3_random 1664261 1664304 -6763977 + (TG)n Simple_repeat Simple_repeat 2 44 0 1889 179 56 3 chr3_random 1664304 1664474 -6763807 - MLT1B LTR MaLR -175 215 15 230 348 64 68 chr3_random 1664515 1664751 -6763530 + L2 LINE L2 2805 3039 -274 246 136 0 0 chr3_random 1664884 1664928 -6763353 + (GA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr3_random 1665158 1665184 -6763097 + AT_rich Low_complexity Low_complexity 1 26 0 180 378 47 24 chr3_random 1665276 1665403 -6762878 - MIR SINE MIR -110 152 23 1887 128 36 77 chr3_random 1666387 1666778 -6761503 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr3_random 1666961 1666998 -6761283 + AT_rich Low_complexity Low_complexity 1 37 0 30 59 0 0 chr3_random 1667031 1667082 -6761199 + AT_rich Low_complexity Low_complexity 1 51 0 2145 163 8 5 chr3_random 1667840 1668220 -6760061 + L1MB1 LINE L1 5492 5872 -296 278 228 18 0 chr3_random 1668225 1668282 -6759999 + MLT1A2 LTR MaLR 317 374 0 1329 222 26 105 chr3_random 1668339 1668767 -6759514 + MLT1D-int LTR MaLR 960 1353 -18 1429 233 44 59 chr3_random 1668780 1669239 -6759042 + MLT1D LTR MaLR 1 452 -53 283 261 0 45 chr3_random 1671614 1671702 -6756579 - MLT1J2 LTR MaLR -3 447 364 243 0 0 0 chr3_random 1673292 1673319 -6754962 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5352 138 24 22 chr3_random 1673414 1673464 -6754817 - Tigger3(Golem) DNA MER2_type 0 3029 2981 2282 75 0 3 chr3_random 1673464 1673757 -6754524 + AluY SINE Alu 1 292 -19 5352 138 24 22 chr3_random 1673757 1674686 -6753595 - Tigger3(Golem) DNA MER2_type -48 2981 2049 228 289 0 0 chr3_random 1674900 1674990 -6753291 + (TA)n Simple_repeat Simple_repeat 1 90 0 1766 140 7 4 chr3_random 1674991 1675262 -6753019 - AluSx SINE Alu -20 292 21 21 0 0 0 chr3_random 1675265 1675286 -6752995 + AT_rich Low_complexity Low_complexity 1 21 0 403 205 24 0 chr3_random 1675360 1675443 -6752838 + HsTC2 DNA Tc2 3 87 -1811 252 0 0 0 chr3_random 1676220 1676248 -6752033 + (TA)n Simple_repeat Simple_repeat 2 29 0 1373 146 50 81 chr3_random 1676261 1676583 -6751698 - AluJb SINE Alu 0 312 1 2341 125 23 114 chr3_random 1677103 1677672 -6750609 - L1MC1 LINE L1 -1 6332 5816 21 0 0 0 chr3_random 1678415 1678436 -6749845 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr3_random 1678535 1678584 -6749697 + AT_rich Low_complexity Low_complexity 1 49 0 461 227 8 45 chr3_random 1678937 1679069 -6749212 - MER63 DNA MER1_type -82 754 2 1808 262 62 13 chr3_random 1679105 1679700 -6748581 + MLT1E2 LTR MaLR 1 624 -2 21 0 0 0 chr3_random 1680008 1680029 -6748252 + AT_rich Low_complexity Low_complexity 1 21 0 2329 114 0 0 chr3_random 1682334 1682641 -6745640 - AluSc SINE Alu -2 307 1 21 0 0 0 chr3_random 1682863 1682884 -6745397 + AT_rich Low_complexity Low_complexity 1 21 0 1022 324 39 24 chr3_random 1683447 1683984 -6744297 - ERVL LTR ERVL -4352 1412 868 496 275 0 30 chr3_random 1684069 1684200 -6744081 - MER52A LTR ERV1 -108 1647 1521 * 547 259 29 83 chr3_random 1684179 1684607 -6743674 - MER52A LTR ERV1 -289 731 523 772 232 7 13 chr3_random 1684742 1684893 -6743388 - MER52A LTR ERV1 -943 812 663 461 314 32 22 chr3_random 1684979 1685164 -6743117 - ERVL LTR ERVL -5071 693 507 292 199 64 14 chr3_random 1685704 1685845 -6742436 + (TA)n Simple_repeat Simple_repeat 2 149 0 335 357 76 49 chr3_random 1686317 1686580 -6741701 + L3 LINE CR1 476 745 -832 1363 204 79 26 chr3_random 1687354 1687697 -6740584 - MLT1A1 LTR MaLR 0 365 5 318 50 0 0 chr3_random 1687816 1687856 -6740425 + (TG)n Simple_repeat Simple_repeat 1 40 0 613 326 132 24 chr3_random 1688835 1689387 -6738894 - L3 LINE CR1 -185 1392 781 22 0 0 0 chr3_random 1689443 1689465 -6738816 + AT_rich Low_complexity Low_complexity 1 22 0 3966 179 27 51 chr3_random 1689498 1690399 -6737882 - L1MA9 LINE L1 -76 6236 5358 224 246 18 0 chr3_random 1690403 1690460 -6737821 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr3_random 1691054 1691075 -6737206 + AT_rich Low_complexity Low_complexity 1 21 0 205 161 0 0 chr3_random 1691425 1691456 -6736825 + (TATG)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr3_random 1691520 1691544 -6736737 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 1252 236 3 17 chr3_random 1691544 1691836 -6736445 - AluJo SINE Alu -22 290 3 2005 114 4 4 chr3_random 1692596 1692876 -6735405 + AluSx SINE Alu 8 287 -25 257 100 20 0 chr3_random 1692877 1692927 -6735354 + (CA)n Simple_repeat Simple_repeat 2 52 0 222 37 0 0 chr3_random 1693058 1693085 -6735196 + (CA)n Simple_repeat Simple_repeat 2 28 0 236 123 31 31 chr3_random 1693096 1693161 -6735120 + (TA)n Simple_repeat Simple_repeat 2 66 0 2949 214 38 17 chr3_random 1694082 1694240 -6734041 + MER67C LTR ERV1 3 156 -554 4892 43 7 0 chr3_random 1694240 1694841 -6733440 + L1PA4 LINE L1 5550 6154 -1 2949 214 38 17 chr3_random 1694841 1695374 -6732907 + MER67C LTR ERV1 156 708 -2 28 0 0 0 chr3_random 1695444 1695472 -6732809 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr3_random 1695696 1695727 -6732554 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3_random 1695817 1695838 -6732443 + AT_rich Low_complexity Low_complexity 1 21 0 633 203 0 0 chr3_random 1696792 1696910 -6731371 - L1PA15 LINE L1 -13 6152 6035 1895 184 53 126 chr3_random 1698897 1699581 -6728700 - LTR27 LTR ERV1 0 636 3 14432 158 39 49 chr3_random 1699582 1702965 -6725316 - LTR27-int LTR ERV1 -1 6995 2615 2190 148 41 8 chr3_random 1702962 1703355 -6724926 - LTR27-int LTR ERV1 -3882 2381 1976 * 736 197 7 40 chr3_random 1703361 1703513 -6724768 - LTR27-int LTR ERV1 -4808 1138 992 932 169 0 0 chr3_random 1703552 1703706 -6724575 - AluSg/x SINE Alu -1 311 158 372 125 0 31 chr3_random 1703744 1703808 -6724473 - LTR27-int LTR ERV1 -907 3973 3912 5348 244 45 41 chr3_random 1703815 1705477 -6722804 - LTR27-int LTR ERV1 -435 4782 1 2210 181 41 118 chr3_random 1705482 1706167 -6722114 - LTR27 LTR ERV1 -2 634 3 38 61 0 0 chr3_random 1706647 1706713 -6721568 + AT_rich Low_complexity Low_complexity 1 66 0 508 79 26 0 chr3_random 1708012 1708088 -6720193 - MADE1 DNA Mariner 0 80 3 2589 223 14 20 chr3_random 1709581 1710593 -6717688 - L1MC/D LINE L1 -685 5648 4644 20399 195 20 21 chr3_random 1710602 1713721 -6714560 - L1PA12 LINE L1 -15 7591 4471 2131 114 7 13 chr3_random 1713721 1714027 -6714254 - AluSq SINE Alu -9 304 1 20399 195 20 21 chr3_random 1714027 1714911 -6713370 - L1PA12 LINE L1 -3135 4471 3588 1834 128 35 3 chr3_random 1714911 1715201 -6713080 + AluSg SINE Alu 1 299 -11 20399 195 20 21 chr3_random 1715201 1715479 -6712802 - L1PA12 LINE L1 -4018 3588 3311 2392 95 0 0 chr3_random 1715479 1715784 -6712497 - AluY SINE Alu -6 305 1 20399 195 20 21 chr3_random 1715784 1715925 -6712356 - L1PA12 LINE L1 -4295 3311 3171 1791 151 18 21 chr3_random 1715925 1716231 -6712050 - AluSx SINE Alu 0 305 1 20399 195 20 21 chr3_random 1716231 1718079 -6710202 - L1PA12 LINE L1 -4435 3171 486 456 293 91 11 chr3_random 1718285 1718572 -6709709 + MER20B DNA MER1_type 343 652 -131 1409 167 32 25 chr3_random 1718644 1718926 -6709355 + MER44D DNA MER2_type 49 602 -7 520 322 47 28 chr3_random 1719916 1720127 -6708154 - MIR SINE MIR -19 243 29 209 397 35 0 chr3_random 1720284 1720425 -6707856 + MIR SINE MIR 43 188 -74 23 0 0 0 chr3_random 1721025 1721048 -6707233 + AT_rich Low_complexity Low_complexity 1 23 0 321 100 0 0 chr3_random 1721842 1721892 -6706389 + (CA)n Simple_repeat Simple_repeat 1 50 0 1757 151 70 0 chr3_random 1722390 1722674 -6705607 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr3_random 1723214 1723236 -6705045 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr3_random 1723407 1723433 -6704848 + AT_rich Low_complexity Low_complexity 1 26 0 437 305 243 13 chr3_random 1723911 1724216 -6704065 - L2 LINE L2 -1 3312 2938 1760 170 75 3 chr3_random 1724721 1725079 -6703202 - L1MB1 LINE L1 -4 6164 5781 1849 139 30 3 chr3_random 1725194 1725497 -6702784 - Tigger3(Golem) DNA MER2_type -980 2049 1739 774 204 21 0 chr3_random 1725494 1725636 -6702645 - Tigger3(Golem) DNA MER2_type -2884 145 1 * 2030 265 65 30 chr3_random 1726089 1726926 -6701355 + L1MD2 LINE L1 5491 6356 -3 234 268 21 0 chr3_random 1727100 1727197 -6701084 + (TA)n Simple_repeat Simple_repeat 2 100 0 29 70 0 0 chr3_random 1727251 1727308 -6700973 + AT_rich Low_complexity Low_complexity 1 57 0 2152 104 0 26 chr3_random 1727899 1728207 -6700074 + AluSx SINE Alu 4 303 -9 23 48 0 48 chr3_random 1731372 1731435 -6696846 + AT_rich Low_complexity Low_complexity 1 60 0 180 77 0 0 chr3_random 1732270 1732296 -6695985 + (TG)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr3_random 1732425 1732458 -6695823 + AT_rich Low_complexity Low_complexity 1 33 0 13040 182 7 23 chr3_random 1732537 1734719 -6693562 + MER66A-int LTR ERV1 4612 6291 -385 864 150 0 0 chr3_random 1734719 1734846 -6693435 + FLAM_C SINE Alu 1 127 -6 13040 182 7 23 chr3_random 1734846 1735227 -6693054 + MER66A-int LTR ERV1 6291 6676 0 2078 209 27 11 chr3_random 1735234 1735679 -6692602 + MER66A LTR ERV1 27 478 0 633 266 38 50 chr3_random 1735681 1736105 -6692176 + L1ME1 LINE L1 5634 6125 -41 1817 149 51 38 chr3_random 1736105 1736475 -6691806 - THE1C LTR MaLR 0 375 1 633 266 38 50 chr3_random 1736475 1736500 -6691781 + L1ME1 LINE L1 6125 6149 -17 900 267 100 61 chr3_random 1736505 1737434 -6690847 + L1M4 LINE L1 2474 3438 -2708 1876 217 68 12 chr3_random 1737442 1737870 -6690411 - MER66A LTR ERV1 0 478 27 913 252 59 8 chr3_random 1737919 1738247 -6690034 - L1ME LINE L1 -554 5610 5265 1874 118 0 59 chr3_random 1738331 1738662 -6689619 + AluSx SINE Alu 1 313 0 1032 89 0 0 chr3_random 1738692 1738827 -6689454 - THE1B LTR MaLR 0 364 230 465 132 0 0 chr3_random 1738815 1738883 -6689398 - THE1B LTR MaLR -295 69 2 * 4854 72 2 0 chr3_random 1738998 1739634 -6688647 - L1PA7 LINE L1 -4 6150 5514 422 337 67 44 chr3_random 1739679 1740184 -6688097 - L1MEc LINE L1 -4318 2078 1562 513 326 70 22 chr3_random 1740290 1740563 -6687718 + L2 LINE L2 1789 2074 -1240 2423 56 7 3 chr3_random 1740563 1740869 -6687412 - AluY SINE Alu -4 307 1 375 208 0 94 chr3_random 1740888 1740984 -6687297 + MLT1-int LTR MaLR 1067 1153 -218 183 42 0 0 chr3_random 1741075 1741099 -6687182 + (TTG)n Simple_repeat Simple_repeat 1 24 0 994 239 40 16 chr3_random 1741764 1742011 -6686270 - MLT1E1 LTR MaLR 0 654 402 375 280 197 5 chr3_random 1742044 1742262 -6686019 - MLT1E1 LTR MaLR -390 264 5 1831 289 76 29 chr3_random 1743066 1744153 -6684128 - L1ME LINE L1 -1668 4478 3340 583 245 19 0 chr3_random 1744286 1744441 -6683840 - L1ME LINE L1 -3483 2663 2506 4976 208 18 7 chr3_random 1744532 1746569 -6681712 - L1PA15 LINE L1 0 7584 5531 2423 143 45 1 chr3_random 1746561 1747301 -6680980 - L1PA15 LINE L1 -4625 2940 2105 * 4923 273 30 29 chr3_random 1747306 1750045 -6678236 - L1PA12 LINE L1 -3959 3625 998 2343 255 47 83 chr3_random 1750171 1750691 -6677590 - L1MEc LINE L1 -5208 1188 651 1512 120 22 0 chr3_random 1750691 1750916 -6677365 - MER30 DNA MER1_type 0 230 1 2343 255 47 83 chr3_random 1750916 1751591 -6676690 - L1MEc LINE L1 -5745 651 36 216 263 25 25 chr3_random 1752946 1753026 -6675255 + MIR SINE MIR 182 261 -1 685 271 107 18 chr3_random 1753667 1753948 -6674333 + L1ME4a LINE L1 4463 4768 -1378 392 325 86 19 chr3_random 1754111 1754425 -6673856 + L1ME4a LINE L1 5563 5897 -224 248 270 9 26 chr3_random 1754584 1754699 -6673582 + L1ME4a LINE L1 5990 6102 -19 28 0 0 0 chr3_random 1755851 1755879 -6672402 + AT_rich Low_complexity Low_complexity 1 28 0 1899 148 40 35 chr3_random 1756243 1756616 -6671665 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3_random 1757322 1757345 -6670936 + AT_rich Low_complexity Low_complexity 1 23 0 587 350 70 0 chr3_random 1757513 1757813 -6670468 - LTR16C LTR ERVL 0 491 171 253 232 0 14 chr3_random 1758799 1758901 -6669380 + CT-rich Low_complexity Low_complexity 1 100 0 5477 110 27 6 chr3_random 1759128 1760570 -6667711 - L1PA13 LINE L1 -2 6161 4690 21 0 0 0 chr3_random 1762291 1762312 -6665969 + GC_rich Low_complexity Low_complexity 1 21 0 1250 187 53 18 chr3_random 1762619 1762903 -6665378 - AluJb SINE Alu -14 298 5 263 246 0 0 chr3_random 1763147 1763204 -6665077 - MIR SINE MIR -124 138 82 5050 180 34 4 chr3_random 1763646 1764220 -6664061 + L1PA15 LINE L1 4710 5265 -900 282 29 0 0 chr3_random 1764220 1764255 -6664026 + (CA)n Simple_repeat Simple_repeat 2 36 0 5050 180 34 4 chr3_random 1764255 1765094 -6663187 + L1PA15 LINE L1 5265 6156 -9 359 197 73 58 chr3_random 1765934 1766071 -6662210 + MER51D LTR ERV1 500 638 -19 5669 127 23 30 chr3_random 1766158 1766912 -6661369 + L1MA4A LINE L1 5300 6047 -256 1844 155 10 10 chr3_random 1766912 1767208 -6661073 + AluSq SINE Alu 1 296 -17 5669 127 23 30 chr3_random 1767208 1767453 -6660828 + L1MA4A LINE L1 6047 6292 -11 957 171 5 21 chr3_random 1768422 1768615 -6659666 - L1MB8 LINE L1 -1 6177 5988 8117 184 33 19 chr3_random 1768702 1768970 -6659311 - L1MA6 LINE L1 -238 6062 5799 309 51 0 0 chr3_random 1768970 1769009 -6659272 + (TG)n Simple_repeat Simple_repeat 2 40 0 8117 184 33 19 chr3_random 1769009 1771144 -6657137 - L1MA6 LINE L1 -501 5799 3631 1045 232 61 9 chr3_random 1771139 1771467 -6656814 - L1MC3 LINE L1 -1624 6161 5817 * 321 231 0 77 chr3_random 1771480 1771571 -6656710 - Tigger7 DNA MER2_type -22 2465 2382 * 2267 200 57 28 chr3_random 1771556 1772051 -6656230 - Tigger7 DNA MER2_type -224 509 1 741 274 91 6 chr3_random 1772107 1772469 -6655812 - L1M4 LINE L1 -3604 3040 2648 23 0 0 0 chr3_random 1772598 1772621 -6655660 + AT_rich Low_complexity Low_complexity 1 23 0 4454 214 10 30 chr3_random 1772642 1773874 -6654407 - L1MA10 LINE L1 -2 6332 5133 * 6369 212 29 40 chr3_random 1773862 1774530 -6653751 - L1MA10 LINE L1 -1258 4888 4214 1980 140 0 0 chr3_random 1774530 1774816 -6653465 - AluSx SINE Alu -26 286 1 6369 212 29 40 chr3_random 1774816 1775848 -6652433 - L1MA10 LINE L1 -1932 4214 3206 328 306 6 77 chr3_random 1775851 1776021 -6652260 - L1MC5 LINE L1 -1168 6793 6636 1594 251 72 79 chr3_random 1776164 1776690 -6651591 - L1M4 LINE L1 -4543 2103 1575 1420 211 3 26 chr3_random 1776690 1776994 -6651287 - AluJo SINE Alu -15 297 1 1594 251 72 79 chr3_random 1776994 1777119 -6651162 - L1M4 LINE L1 -5071 1575 1451 1776 131 12 4 chr3_random 1777119 1777378 -6650903 + AluSc SINE Alu 37 297 -12 285 29 0 0 chr3_random 1777378 1777412 -6650869 + (TA)n Simple_repeat Simple_repeat 2 35 0 1594 251 72 79 chr3_random 1777412 1777792 -6650489 - L1M4 LINE L1 -5193 1453 1077 556 285 70 0 chr3_random 1778083 1778182 -6650099 - L1M4 LINE L1 -6306 236 145 273 57 0 0 chr3_random 1778182 1778217 -6650064 + (TG)n Simple_repeat Simple_repeat 1 35 0 556 285 70 0 chr3_random 1778217 1778317 -6649964 - L1M4 LINE L1 -6397 145 23 504 238 25 41 chr3_random 1778859 1778981 -6649300 - MLT1I LTR MaLR -248 161 42 387 286 53 8 chr3_random 1779163 1779296 -6648985 + MER117 DNA MER1_type 2 140 -57 2305 120 14 3 chr3_random 1780547 1780896 -6647385 - THE1A LTR MaLR 0 355 3 10128 139 6 31 chr3_random 1780898 1782518 -6645763 - THE1A-int LTR MaLR 0 1580 1 2590 107 3 0 chr3_random 1782518 1782872 -6645409 - THE1A LTR MaLR 0 355 1 379 318 92 56 chr3_random 1783167 1783494 -6644787 - MLT1G LTR MaLR -84 506 169 359 175 21 56 chr3_random 1783503 1783646 -6644635 + (TATAA)n Simple_repeat Simple_repeat 2 139 0 293 370 9 0 chr3_random 1783652 1783760 -6644521 - MLT1G LTR MaLR -403 192 84 186 43 0 0 chr3_random 1784928 1784951 -6643330 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1181 232 87 85 chr3_random 1785016 1785511 -6642770 + L1M4 LINE L1 -248 247 -6033 1656 188 68 3 chr3_random 1785749 1786074 -6642207 + MER7A DNA MER2_type 2 345 -1 500 219 1 101 chr3_random 1786091 1786261 -6642020 - MLT2D LTR ERVL -40 373 201 1121 270 93 18 chr3_random 1786282 1786905 -6641376 + L1M4 LINE L1 1173 1773 -4540 210 58 115 0 chr3_random 1986976 1987028 -6441253 + (TA)n Simple_repeat Simple_repeat 1 58 0 181 394 32 11 chr3_random 1987047 1987141 -6441140 - L2 LINE L2 -18 3254 3159 295 314 23 0 chr3_random 1989074 1989160 -6439121 + L2 LINE L2 3185 3272 0 838 183 0 7 chr3_random 1989336 1989473 -6438808 + FLAM_C SINE Alu 1 136 -7 282 358 145 58 chr3_random 1989822 1990007 -6438274 - L2 LINE L2 0 3272 3104 2611 84 6 6 chr3_random 1990007 1990362 -6437919 - THE1A LTR MaLR 0 355 1 11908 92 3 0 chr3_random 1990362 1991937 -6436344 - THE1A-int LTR MaLR 0 1580 1 2777 84 0 0 chr3_random 1991937 1992292 -6435989 - THE1A LTR MaLR 0 355 1 282 358 145 58 chr3_random 1992292 1992531 -6435750 - L2 LINE L2 -167 3105 2809 371 323 8 0 chr3_random 1992594 1992721 -6435560 - MIR SINE MIR -3 259 132 424 254 21 109 chr3_random 1992899 1993092 -6435189 + MIR3 SINE MIR 20 195 -13 2530 71 0 0 chr3_random 1994084 1994392 -6433889 - AluY SINE Alu -3 308 1 273 282 0 0 chr3_random 1994685 1994756 -6433525 - MIR SINE MIR -8 254 184 2087 81 0 11 chr3_random 1995340 1995601 -6432680 + AluSg SINE Alu 1 258 -52 1911 145 17 10 chr3_random 1996770 1997060 -6431221 - AluJb SINE Alu -20 292 1 296 276 38 0 chr3_random 1997180 1997285 -6430996 + L1ME4a LINE L1 5999 6107 -14 372 292 234 12 chr3_random 1998758 1998929 -6429352 - MIR SINE MIR -6 256 48 338 340 39 44 chr3_random 1999196 1999382 -6428899 - MIR SINE MIR -56 152 16 469 254 105 101 chr3_random 2000083 2000331 -6427950 + L2 LINE L2 3024 3272 0 1583 250 55 33 chr3_random 2000664 2001208 -6427073 + LTR38 LTR ERV1 1 556 0 1330 207 46 52 chr3_random 2002794 2003161 -6425120 - MLT1A1 LTR MaLR 0 365 1 296 292 62 19 chr3_random 2003211 2003372 -6424909 - MLT1K LTR MaLR -230 358 191 195 296 37 0 chr3_random 2003690 2003744 -6424537 + MIR3 SINE MIR 144 199 -9 258 159 0 111 chr3_random 2003806 2003869 -6424412 - L2 LINE L2 0 3272 3217 261 83 0 0 chr3_random 2004088 2004124 -6424157 + (CA)n Simple_repeat Simple_repeat 1 36 0 185 321 158 42 chr3_random 2005266 2005431 -6422850 + MIR3 SINE MIR 19 202 -6 237 333 41 49 chr3_random 2005860 2005983 -6422298 + MIR SINE MIR 21 142 -66 254 412 10 0 chr3_random 2008832 2008929 -6419352 + L2 LINE L2 3140 3237 -35 2449 62 0 0 chr3_random 2009413 2009701 -6418580 - AluY SINE Alu -23 288 1 22 80 0 0 chr3_random 2010117 2010167 -6418114 + AT_rich Low_complexity Low_complexity 1 50 0 435 19 0 0 chr3_random 2011062 2011114 -6417167 + (TG)n Simple_repeat Simple_repeat 1 52 0 270 0 0 0 chr3_random 2011113 2011143 -6417138 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 401 293 90 42 chr3_random 2013406 2013618 -6414663 - L2 LINE L2 0 3313 3092 10133 32 1 1 chr3_random 2015369 2016690 -6411591 - L1P2 LINE L1 -713 5442 4122 6372 31 0 0 chr3_random 2016690 2017439 -6410842 + L1PA4 LINE L1 5403 6153 -2 3015 194 56 63 chr3_random 2017439 2018329 -6409952 + L1ME1 LINE L1 5278 6161 -5 1858 121 25 7 chr3_random 2021119 2021401 -6406880 + AluSx SINE Alu 1 287 -25 471 224 12 18 chr3_random 2021401 2021566 -6406715 + G-rich Low_complexity Low_complexity 3 166 0 702 307 95 27 chr3_random 2021978 2022389 -6405892 + L2 LINE L2 2013 2451 -863 244 404 83 43 chr3_random 2022811 2023138 -6405143 + L2 LINE L2 2929 3268 -4 1359 249 102 14 chr3_random 2023673 2024094 -6404187 + LTR33 LTR ERVL 3 460 -61 1318 264 80 56 chr3_random 2024628 2025099 -6403182 + MLT1E LTR MaLR 3 494 -99 2244 100 0 0 chr3_random 2025099 2025411 -6402870 - AluSc SINE Alu 0 312 1 1318 264 80 56 chr3_random 2025411 2025512 -6402769 + MLT1E LTR MaLR 494 591 -2 21 0 0 0 chr3_random 2025646 2025667 -6402614 + AT_rich Low_complexity Low_complexity 1 21 0 182 407 19 19 chr3_random 2026013 2026121 -6402160 + L3 LINE CR1 21 128 -1449 384 155 0 0 chr3_random 2026939 2027010 -6401271 + CT-rich Low_complexity Low_complexity 2 72 0 444 214 40 8 chr3_random 2027230 2027356 -6400925 - L1ME4a LINE L1 -37 6084 5955 210 225 0 0 chr3_random 2027760 2027800 -6400481 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 277 259 0 0 chr3_random 2028024 2028078 -6400203 + L2 LINE L2 3214 3267 -5 310 249 236 47 chr3_random 2028117 2028145 -6400136 - MIR SINE MIR 0 262 241 1817 203 31 5 chr3_random 2028145 2028491 -6399790 + MLT2C1 LTR ERVL 3 361 -36 578 39 13 0 chr3_random 2028491 2028568 -6399713 + (CA)n Simple_repeat Simple_repeat 2 79 0 1817 203 31 5 chr3_random 2028568 2028606 -6399675 + MLT2C1 LTR ERVL 361 397 0 310 249 236 47 chr3_random 2028606 2028787 -6399494 - MIR SINE MIR -21 241 20 559 282 82 18 chr3_random 2030081 2030301 -6397980 - L2 LINE L2 -276 3037 2804 1246 274 169 15 chr3_random 2030340 2030877 -6397404 - L2 LINE L2 -802 2512 1893 309 331 81 19 chr3_random 2030896 2031056 -6397225 + HAL1b LINE L1 585 754 -594 294 235 60 12 chr3_random 2031568 2031734 -6396547 + L1M4 LINE L1 2321 2494 -3652 320 281 34 48 chr3_random 2032057 2032203 -6396078 + L1M4 LINE L1 2860 3003 -3143 387 301 191 16 chr3_random 2032499 2032682 -6395599 + MIR SINE MIR 19 233 -29 475 298 136 40 chr3_random 2032753 2032981 -6395300 + MIR SINE MIR 13 262 0 479 308 76 6 chr3_random 2034036 2034208 -6394073 - MIR3 SINE MIR -8 200 17 2391 87 0 0 chr3_random 2034393 2034691 -6393590 + AluSc SINE Alu 1 298 -11 27 0 0 0 chr3_random 2035251 2035278 -6393003 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3_random 2035398 2035422 -6392859 + AT_rich Low_complexity Low_complexity 1 24 0 204 265 59 0 chr3_random 2036143 2036211 -6392070 - MIR SINE MIR -111 151 80 1957 170 0 16 chr3_random 2036216 2036522 -6391759 + AluJo SINE Alu 1 301 -11 439 345 70 12 chr3_random 2037067 2037238 -6391043 + MIR3 SINE MIR 28 208 0 1759 159 45 36 chr3_random 2037589 2037948 -6390333 - MER47A DNA MER2_type -4 362 1 2044 144 87 1 chr3_random 2039216 2039591 -6388690 + MSTA LTR MaLR 1 339 -25 23341 136 19 30 chr3_random 2039592 2043857 -6384424 - L1PA7 LINE L1 -17 6452 2177 2359 79 20 10 chr3_random 2043857 2044160 -6384121 + AluY SINE Alu 1 306 -5 23341 136 19 30 chr3_random 2044160 2046314 -6381967 - L1PA7 LINE L1 -4292 2177 3 234 62 0 0 chr3_random 2046314 2046346 -6381935 + MSTA LTR MaLR 384 415 -11 301 274 18 9 chr3_random 2046823 2046936 -6381345 - MER103 DNA DNA -16 150 37 286 340 14 111 chr3_random 2047274 2047627 -6380654 + L2 LINE L2 2868 3186 -86 1312 128 0 103 chr3_random 2047659 2047901 -6380380 - AluJo SINE Alu -25 287 71 456 326 15 15 chr3_random 2047903 2048035 -6380246 - MIR SINE MIR -74 134 3 266 148 19 0 chr3_random 2048290 2048344 -6379937 + MER103 DNA DNA 47 101 -65 542 153 15 46 chr3_random 2049053 2049184 -6379097 + MLT1C LTR MaLR 16 142 -325 2453 74 0 0 chr3_random 2049668 2049964 -6378317 - AluY SINE Alu -15 296 1 22 0 0 0 chr3_random 2050223 2050245 -6378036 + AT_rich Low_complexity Low_complexity 1 22 0 191 225 25 88 chr3_random 2051583 2051663 -6376618 + L3b LINE CR1 1415 1489 -94 695 215 0 28 chr3_random 2051899 2052043 -6376238 + MER5A DNA MER1_type 25 164 -25 1867 184 0 34 chr3_random 2053061 2053442 -6374839 + MLT1A2 LTR MaLR 1 368 -6 2801 173 34 52 chr3_random 2053618 2054237 -6374044 + LTR9 LTR ERV1 4 611 -1 798 238 79 33 chr3_random 2055901 2056141 -6372140 + MIR SINE MIR 9 259 -3 836 238 119 93 chr3_random 2056661 2057198 -6371083 - MLT1G1 LTR MaLR -44 551 1 362 210 12 0 chr3_random 2057219 2057300 -6370981 - LTR67 LTR ERVL 0 557 476 249 337 110 6 chr3_random 2057426 2057589 -6370692 - LTR67 LTR ERVL -246 311 132 1707 151 4 0 chr3_random 2057917 2058193 -6370088 + AluSx SINE Alu 31 307 0 2165 113 0 7 chr3_random 2058789 2059089 -6369192 - AluSg SINE Alu -12 298 1 369 213 53 53 chr3_random 2059234 2059328 -6368953 + L2 LINE L2 3193 3286 -27 421 285 39 63 chr3_random 2060227 2060434 -6367847 - L3b LINE CR1 -202 1381 1180 240 35 0 0 chr3_random 2061990 2062019 -6366262 + (CA)n Simple_repeat Simple_repeat 2 30 0 274 214 14 0 chr3_random 2062056 2062126 -6366155 + HsTC2 DNA Tc2 4 74 -1824 391 275 174 17 chr3_random 2062525 2062703 -6365578 - MIR SINE MIR -29 233 28 1668 167 19 0 chr3_random 2064622 2064885 -6363396 + AluJb SINE Alu 29 296 -16 2295 83 0 7 chr3_random 2065950 2066240 -6362041 - AluSc SINE Alu -21 288 1 1712 156 39 26 chr3_random 2067261 2067569 -6360712 + AluJb SINE Alu 1 312 0 22 0 0 0 chr3_random 2068824 2068846 -6359435 + AT_rich Low_complexity Low_complexity 1 22 0 411 21 0 0 chr3_random 2069033 2069081 -6359200 + (TG)n Simple_repeat Simple_repeat 1 48 0 183 100 0 0 chr3_random 2069584 2069614 -6358667 + (CAT)n Simple_repeat Simple_repeat 3 32 0 2014 197 68 33 chr3_random 2069615 2070102 -6358179 + MLT1D LTR MaLR 1 504 -1 406 293 146 6 chr3_random 2070107 2070271 -6358010 - MIR SINE MIR -75 187 1 272 253 33 44 chr3_random 2070547 2070638 -6357643 + MIR3 SINE MIR 4 93 -115 1763 168 45 22 chr3_random 2070733 2071090 -6357191 + MLT1A1 LTR MaLR 1 365 0 196 326 120 11 chr3_random 2071777 2071869 -6356412 - MIR SINE MIR -142 120 19 520 303 87 16 chr3_random 2072545 2072799 -6355482 - MLT1K LTR MaLR -178 410 139 1768 135 34 0 chr3_random 2073227 2073494 -6354787 + AluSx SINE Alu 37 312 0 266 407 62 0 chr3_random 2073987 2074100 -6354181 + L2 LINE L2 3104 3223 -49 5404 125 27 7 chr3_random 2074915 2075428 -6352853 - L1PA15 LINE L1 -1 6164 5626 3356 92 13 0 chr3_random 2075428 2075875 -6352406 + MLT2A2 LTR ERVL 1 453 0 5404 125 27 7 chr3_random 2075875 2076225 -6352056 - L1PA15 LINE L1 -539 5626 5284 632 133 7 154 chr3_random 2076373 2076652 -6351629 + L1PA4 LINE L1 5914 6151 -4 1712 151 14 27 chr3_random 2076795 2077087 -6351194 + AluJo SINE Alu 9 296 -16 364 283 33 0 chr3_random 2077565 2077657 -6350624 - MIR3 SINE MIR -7 201 107 1770 28 9 5 chr3_random 2077855 2078067 -6350214 + AluY SINE Alu 91 303 -8 2058 126 3 29 chr3_random 2078097 2078407 -6349874 + AluSx SINE Alu 1 302 -10 23 68 0 0 chr3_random 2078802 2078846 -6349435 + AT_rich Low_complexity Low_complexity 1 44 0 254 233 67 33 chr3_random 2078868 2078958 -6349323 + L1ME4a LINE L1 5961 6053 -68 389 322 89 28 chr3_random 2080938 2081118 -6347163 - MIR3 SINE MIR -9 199 9 1909 171 33 8 chr3_random 2081195 2081528 -6346753 + MLT1A1 LTR MaLR 7 407 -19 2631 104 6 6 chr3_random 2081528 2081892 -6346389 - THE1B LTR MaLR 0 364 1 1909 171 33 8 chr3_random 2081892 2081913 -6346368 + MLT1A1 LTR MaLR 407 426 0 524 250 102 13 chr3_random 2082189 2082425 -6345856 + L1ME4a LINE L1 5641 5897 -224 21 0 0 0 chr3_random 2082648 2082669 -6345612 + AT_rich Low_complexity Low_complexity 1 21 0 2153 139 22 25 chr3_random 2083176 2083543 -6344738 - MER47A DNA MER2_type 0 366 1 2471 57 13 0 chr3_random 2083585 2083885 -6344396 - AluY SINE Alu -7 304 1 2369 140 32 37 chr3_random 2084258 2084694 -6343587 + Tigger2a DNA MER2_type 1 434 0 401 257 121 43 chr3_random 2084826 2084966 -6343315 - MIR3 SINE MIR -42 166 16 214 269 122 115 chr3_random 2085551 2085707 -6342574 + MIR3 SINE MIR 17 173 -35 279 0 0 0 chr3_random 2087682 2087713 -6340568 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr3_random 2087778 2087801 -6340480 + (TTG)n Simple_repeat Simple_repeat 2 24 0 396 0 0 0 chr3_random 2088252 2088296 -6339985 + (CA)n Simple_repeat Simple_repeat 1 44 0 186 43 0 0 chr3_random 2088307 2088330 -6339951 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1182 175 0 0 chr3_random 2088402 2088625 -6339656 + L1MA6 LINE L1 6068 6290 -10 305 338 7 22 chr3_random 2088740 2088876 -6339405 + L1MC4a LINE L1 5782 5915 -1893 2292 98 0 10 chr3_random 2088996 2089301 -6338980 - AluSq SINE Alu -5 308 7 3608 102 2 0 chr3_random 2089402 2089910 -6338371 - L1PB2 LINE L1 -3 6148 5640 2716 120 22 0 chr3_random 2090469 2090979 -6337302 + L1PA13 LINE L1 4926 5442 -721 2457 60 3 0 chr3_random 2090979 2091277 -6337004 + AluY SINE Alu 1 299 -12 3203 78 5 0 chr3_random 2091277 2091702 -6336579 + L1PA13 LINE L1 5481 5907 -256 186 350 88 25 chr3_random 2091873 2091953 -6336328 + L2 LINE L2 3166 3250 -22 2467 53 7 13 chr3_random 2092901 2093205 -6335076 + AluY SINE Alu 1 302 -9 23 0 0 0 chr3_random 2093390 2093413 -6334868 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3_random 2093517 2093541 -6334740 + AT_rich Low_complexity Low_complexity 1 24 0 2222 108 7 7 chr3_random 2093544 2093849 -6334432 + AluSc SINE Alu 1 305 -4 594 87 0 52 chr3_random 2093853 2093968 -6334313 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 471 257 54 0 chr3_random 2093975 2094123 -6334158 + L1P LINE L1 5045 5200 -946 1638 164 0 7 chr3_random 2094193 2094467 -6333814 + AluJb SINE Alu 3 274 -38 605 192 179 0 chr3_random 2094638 2094789 -6333492 - MIR SINE MIR -26 236 59 24 32 0 0 chr3_random 2094800 2094831 -6333450 + AT_rich Low_complexity Low_complexity 1 31 0 264 316 0 108 chr3_random 2099709 2099867 -6328414 + MER5A DNA MER1_type 1 141 -48 316 260 115 21 chr3_random 2099910 2100006 -6328275 - MER5B DNA MER1_type -63 115 11 336 258 0 0 chr3_random 2100742 2100808 -6327473 - L2 LINE L2 -4 3309 3244 398 253 0 0 chr3_random 2100914 2100997 -6327284 + L2 LINE L2 3229 3311 -2 2510 68 0 0 chr3_random 2101065 2101372 -6326909 + AluY SINE Alu 1 307 -4 2577 174 28 2 chr3_random 2101528 2102021 -6326260 - L1MB2 LINE L1 -4 6167 5662 317 265 88 22 chr3_random 2102099 2102235 -6326046 - L1MB2 LINE L1 -1023 5123 4979 679 261 115 17 chr3_random 2102292 2102526 -6325755 - MIR SINE MIR 0 262 6 1412 18 0 0 chr3_random 2102784 2102952 -6325329 + L1PA3 LINE L1 2796 2963 -3183 20719 28 0 0 chr3_random 2102952 2106206 -6322075 + L1PA3 LINE L1 2897 6151 -4 1656 128 56 4 chr3_random 2106499 2106765 -6321516 + AluSx SINE Alu 24 303 -9 199 82 0 61 chr3_random 2106792 2106841 -6321440 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 198 314 106 83 chr3_random 2107426 2107917 -6320364 + L2 LINE L2 1864 2365 -949 334 280 152 16 chr3_random 2107960 2108085 -6320196 - L2 LINE L2 -5 3267 3126 868 251 52 4 chr3_random 2108721 2108952 -6319329 + MIR SINE MIR 21 262 0 700 283 140 28 chr3_random 2110782 2111182 -6317099 + L2 LINE L2 720 1164 -2150 5887 74 10 1 chr3_random 2111255 2112084 -6316197 - L1PB1 LINE L1 0 6151 5316 911 304 149 42 chr3_random 2112094 2112426 -6315855 + L2 LINE L2 1304 1599 -1715 2203 126 0 0 chr3_random 2112426 2112728 -6315553 + AluSx SINE Alu 1 302 -10 911 304 149 42 chr3_random 2112728 2112994 -6315287 + L2 LINE L2 1599 1966 -1348 762 306 112 0 chr3_random 2113075 2113398 -6314883 + L2 LINE L2 2921 3279 -34 2184 165 35 77 chr3_random 2113398 2113877 -6314404 + LTR32 LTR ERVL 13 471 0 216 356 94 0 chr3_random 2114341 2114490 -6313791 + MER5B DNA MER1_type 3 165 -13 529 263 117 98 chr3_random 2115202 2115612 -6312669 + MLT1K LTR MaLR 145 562 -26 1187 211 40 8 chr3_random 2115896 2116147 -6312134 + MIR SINE MIR 4 262 0 1561 81 49 22 chr3_random 2116846 2117069 -6311212 - MER30 DNA MER1_type 0 230 2 2120 219 96 18 chr3_random 2117089 2117746 -6310535 + MER20B DNA MER1_type 35 742 -41 1795 152 3 28 chr3_random 2117746 2118075 -6310206 + AluJb SINE Alu 1 322 0 1778 176 0 17 chr3_random 2118088 2118389 -6309892 + AluJo SINE Alu 1 296 -16 1357 130 178 20 chr3_random 2118391 2118644 -6309637 + AluSg1 SINE Alu 1 293 -16 37 39 0 0 chr3_random 2118647 2118698 -6309583 + AT_rich Low_complexity Low_complexity 1 51 0 717 239 168 30 chr3_random 2120347 2120644 -6307637 + MER69 DNA AcHobo 6 343 -2183 1371 220 63 153 chr3_random 2121024 2121742 -6306539 + MER69 DNA AcHobo 1874 2526 0 617 223 84 42 chr3_random 2122792 2122829 -6305452 - MER5B DNA MER1_type -5 173 139 754 70 140 0 chr3_random 2122829 2122943 -6305338 + L1PB1 LINE L1 6021 6150 -1 617 223 84 42 chr3_random 2122943 2123071 -6305210 - MER5B DNA MER1_type -39 139 1 928 145 9 88 chr3_random 2123080 2123307 -6304974 - MER20 DNA MER1_type -10 209 1 4274 121 167 23 chr3_random 2123428 2124418 -6303863 + MER11B LTR ERVK 1 1232 -4 21 36 0 0 chr3_random 2125599 2125627 -6302654 + AT_rich Low_complexity Low_complexity 1 28 0 2182 108 0 11 chr3_random 2126052 2126339 -6301942 + AluSx SINE Alu 1 284 -28 387 0 0 0 chr3_random 2126342 2126385 -6301896 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1346 219 141 50 chr3_random 2126465 2126962 -6301319 + MLT1F LTR MaLR 1 542 0 488 219 8 0 chr3_random 2127303 2127426 -6300855 + CT-rich Low_complexity Low_complexity 1 124 0 1782 165 44 0 chr3_random 2127426 2127723 -6300558 - AluJb SINE Alu -2 310 1 21 0 0 0 chr3_random 2128357 2128378 -6299903 + AT_rich Low_complexity Low_complexity 1 21 0 2057 182 34 8 chr3_random 2128529 2128909 -6299372 + MER6 DNA MER2_type 2 391 -474 1880 188 7 0 chr3_random 2129261 2129570 -6298711 - AluJb SINE Alu -1 311 1 342 271 31 16 chr3_random 2130031 2130160 -6298121 + LTR16C LTR ERVL 361 491 0 24 0 0 0 chr3_random 2130485 2130509 -6297772 + AT_rich Low_complexity Low_complexity 1 24 0 198 224 158 53 chr3_random 2130690 2130766 -6297515 + L2 LINE L2 3184 3267 -5 20334 33 0 0 chr3_random 2131004 2134237 -6294044 + L1PA2 LINE L1 2912 6148 -7 21 0 0 0 chr3_random 2134286 2134307 -6293974 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3_random 2134322 2134350 -6293931 + (A)n Simple_repeat Simple_repeat 1 28 0 6110 32 4 0 chr3_random 2135107 2135864 -6292417 + L1PA4 LINE L1 5344 6103 -52 255 337 11 28 chr3_random 2136196 2136377 -6291904 + CT-rich Low_complexity Low_complexity 2 179 0 4473 180 35 15 chr3_random 2136961 2138003 -6290278 - L1P4 LINE L1 -709 5456 4393 261 83 0 0 chr3_random 2138003 2138039 -6290242 + (TG)n Simple_repeat Simple_repeat 2 37 0 4473 180 35 15 chr3_random 2138039 2138128 -6290153 - L1P4 LINE L1 -1772 4393 4307 923 202 243 50 chr3_random 2139334 2139754 -6288527 + MLT1D LTR MaLR 1 501 -4 23 0 0 0 chr3_random 2140307 2140330 -6287951 + AT_rich Low_complexity Low_complexity 1 23 0 2665 181 76 89 chr3_random 2141917 2142744 -6285537 + MER21B LTR ERV1 12 827 -36 876 68 0 0 chr3_random 2142801 2142904 -6285377 + AluY SINE Alu 29 131 -180 2208 84 3 38 chr3_random 2142913 2143233 -6285048 + AluY SINE Alu 1 309 -2 567 355 86 38 chr3_random 2143705 2144367 -6283914 - L2 LINE L2 -800 2514 1821 281 387 32 8 chr3_random 2144475 2144599 -6283682 - L2 LINE L2 0 3272 3146 240 35 0 0 chr3_random 2144942 2144971 -6283310 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3_random 2145307 2145330 -6282951 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3_random 2145760 2145781 -6282500 + AT_rich Low_complexity Low_complexity 1 21 0 506 130 10 30 chr3_random 2145804 2145904 -6282377 + L1MB7 LINE L1 6061 6158 -26 290 175 10 82 chr3_random 2146856 2146953 -6281328 + L1M4 LINE L1 4968 5057 -1089 1170 196 42 26 chr3_random 2146956 2147333 -6280948 + L1MB8 LINE L1 4967 5349 -797 2854 124 23 36 chr3_random 2147393 2147916 -6280365 + L1MB8 LINE L1 5663 6178 0 688 256 14 5 chr3_random 2147916 2148139 -6280142 + L1M4 LINE L1 5048 5272 -874 282 283 98 0 chr3_random 2148157 2148249 -6280032 - MIR SINE MIR -65 197 97 2510 130 18 47 chr3_random 2148679 2149125 -6279156 + Tigger2a DNA MER2_type 2 434 0 479 270 40 0 chr3_random 2149297 2149423 -6278858 + MIR SINE MIR 130 260 -2 273 200 43 14 chr3_random 2150591 2150661 -6277620 + L2 LINE L2 3168 3239 -74 534 152 121 61 chr3_random 2150844 2150976 -6277305 + AluSg/x SINE Alu 155 294 -15 1775 142 10 29 chr3_random 2351851 2352162 -6076119 + L1P LINE L1 978 1282 -4864 410 185 25 12 chr3_random 2353431 2353512 -6074769 - AluSg/x SINE Alu -4 296 215 293 312 170 0 chr3_random 2353513 2353654 -6074627 - MIR SINE MIR -73 189 25 2091 112 0 11 chr3_random 2353866 2354183 -6074098 - AluSx SINE Alu 0 314 1 1937 130 55 21 chr3_random 2354183 2354531 -6073750 - MER46B DNA MER2_type 0 236 0 1486 183 48 15 chr3_random 2355275 2355543 -6072738 - AluJo SINE Alu -32 280 4 992 171 6 6 chr3_random 2356670 2356840 -6071441 - AluSg/x SINE Alu -14 298 129 242 230 79 40 chr3_random 2356975 2357127 -6071154 + AluYa5 SINE Alu 94 251 -50 240 35 0 0 chr3_random 2357193 2357222 -6071059 + (TA)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr3_random 2357429 2357456 -6070825 + AT_rich Low_complexity Low_complexity 1 27 0 1759 60 5 0 chr3_random 2360290 2360506 -6067775 + AluY SINE Alu 86 302 -9 1824 181 0 7 chr3_random 2361635 2361934 -6066347 + AluJb SINE Alu 1 297 -15 418 194 0 0 chr3_random 2362299 2362371 -6065910 + FLAM SINE Alu 46 117 -26 186 43 0 0 chr3_random 2362371 2362394 -6065887 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 296 284 34 23 chr3_random 2362810 2362898 -6065383 + MIR SINE MIR 20 108 -100 843 288 96 21 chr3_random 2362969 2363490 -6064791 + HAL1 LINE L1 1241 1800 -707 365 289 96 30 chr3_random 2363495 2363661 -6064620 + HAL1 LINE L1 1858 2034 -473 428 248 8 16 chr3_random 2363689 2363814 -6064467 + L1ME3A LINE L1 6042 6165 -5 874 224 57 91 chr3_random 2363870 2364097 -6064184 + HAL1 LINE L1 2062 2266 -241 2323 97 0 7 chr3_random 2364097 2364405 -6063876 + AluSq SINE Alu 1 306 -7 874 224 57 91 chr3_random 2364405 2364637 -6063644 + HAL1 LINE L1 2266 2505 -2 33 20 0 20 chr3_random 2365008 2365028 -6063253 + AT_rich Low_complexity Low_complexity 1 20 -30 2030 140 0 3 chr3_random 2365028 2365321 -6062960 + AluSx SINE Alu 1 292 -20 33 20 0 20 chr3_random 2365321 2365351 -6062930 + AT_rich Low_complexity Low_complexity 20 50 0 371 297 208 10 chr3_random 2366086 2366278 -6062003 + MIR SINE MIR 20 249 -13 1999 250 149 61 chr3_random 2366403 2367030 -6061251 - L2 LINE L2 -90 3223 2652 2160 128 0 0 chr3_random 2367030 2367320 -6060961 + AluSg SINE Alu 3 292 -18 1999 250 149 61 chr3_random 2367320 2367457 -6060824 - L2 LINE L2 -661 2652 2528 2200 107 0 0 chr3_random 2367457 2367757 -6060524 + AluSx SINE Alu 1 300 -12 1999 250 149 61 chr3_random 2367757 2368162 -6060119 - L2 LINE L2 -785 2528 1951 654 180 0 0 chr3_random 2368325 2368436 -6059845 + FLAM_C SINE Alu 1 111 -32 397 306 81 64 chr3_random 2368478 2368833 -6059448 + L2 LINE L2 2702 3068 -245 1660 334 67 31 chr3_random 2368998 2369578 -6058703 - L3 LINE CR1 -27 1550 921 2284 100 0 0 chr3_random 2369578 2369877 -6058404 + AluSg SINE Alu 1 299 -11 1660 334 67 31 chr3_random 2369877 2370241 -6058040 - L3 LINE CR1 -656 921 572 1974 150 0 3 chr3_random 2372565 2372859 -6055422 - AluSx SINE Alu -19 293 1 764 284 121 46 chr3_random 2373114 2373782 -6054499 - L2 LINE L2 -48 3265 2557 561 287 40 0 chr3_random 2373870 2374020 -6054261 - MIR SINE MIR -94 168 13 1204 339 120 24 chr3_random 2374107 2375038 -6053243 - L2 LINE L2 -888 2426 1406 905 334 24 22 chr3_random 2475795 2476166 -5952115 + L2 LINE L2 2433 2804 -510 460 295 52 26 chr3_random 2476341 2476534 -5951747 + LTR33 LTR ERVL 322 519 -2 374 368 46 46 chr3_random 2477039 2477719 -5950562 + ERVL LTR ERVL 764 1443 -4321 23 33 0 0 chr3_random 2477925 2477955 -5950326 + AT_rich Low_complexity Low_complexity 1 30 0 10915 133 35 12 chr3_random 2478212 2479245 -5949036 - Tigger4(Zombi) DNA MER2_type -1 2730 1637 1596 59 0 10 chr3_random 2479245 2479449 -5948832 - AluY SINE Alu 0 311 110 10915 133 35 12 chr3_random 2479449 2480195 -5948086 - Tigger4(Zombi) DNA MER2_type -1094 1637 910 728 203 31 6 chr3_random 2480195 2480358 -5947923 - FRAM SINE Alu -9 167 1 5346 150 30 18 chr3_random 2480358 2481263 -5947018 - Tigger4(Zombi) DNA MER2_type -1812 919 4 348 43 0 0 chr3_random 2481265 2481311 -5946970 + (TG)n Simple_repeat Simple_repeat 2 47 0 260 372 0 0 chr3_random 2481493 2481571 -5946710 - L3 LINE CR1 -1454 123 46 23 0 0 0 chr3_random 2481660 2481683 -5946598 + AT_rich Low_complexity Low_complexity 1 23 0 598 252 112 45 chr3_random 2481877 2482119 -5946162 - MIR SINE MIR -4 258 1 350 258 22 0 chr3_random 2482209 2482298 -5945983 - MIR3 SINE MIR -7 201 111 452 230 176 27 chr3_random 2482308 2482456 -5945825 + MIR SINE MIR 35 204 -58 280 271 43 27 chr3_random 2482891 2483036 -5945245 - MLT1J LTR MaLR -203 308 235 542 279 52 52 chr3_random 2483454 2483683 -5944598 - MIR SINE MIR 0 262 34 6819 58 27 9 chr3_random 2484050 2485017 -5943264 - L1PA7 LINE L1 0 6154 5180 1630 184 3 3 chr3_random 2485306 2485612 -5942669 - AluJb SINE Alu 0 306 1 557 267 35 79 chr3_random 2486292 2486355 -5941926 - MIR SINE MIR -4 258 194 1879 106 0 23 chr3_random 2486355 2486619 -5941662 + AluSg SINE Alu 42 299 -11 557 267 35 79 chr3_random 2486619 2486757 -5941524 - MIR SINE MIR -68 194 66 26 64 0 0 chr3_random 2486826 2486873 -5941408 + AT_rich Low_complexity Low_complexity 1 47 0 249 189 0 19 chr3_random 2486921 2486974 -5941307 + L2 LINE L2 3221 3272 0 21 57 0 0 chr3_random 2488229 2488264 -5940017 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3_random 2488512 2488541 -5939740 + AT_rich Low_complexity Low_complexity 1 29 0 243 344 10 0 chr3_random 2489023 2489119 -5939162 + L2 LINE L2 2854 2950 -363 1939 267 123 49 chr3_random 2489147 2490227 -5938054 - L1MC4 LINE L1 -140 7902 6743 1644 203 52 21 chr3_random 2492234 2492618 -5935663 + MSTD LTR MaLR 1 396 0 279 104 0 0 chr3_random 2493403 2493451 -5934830 + (GA)n Simple_repeat Simple_repeat 2 49 0 1197 249 80 19 chr3_random 2493803 2494176 -5934105 - MSTD LTR MaLR 0 396 1 1234 286 212 5 chr3_random 2494546 2495113 -5933168 + L2 LINE L2 1986 2669 -645 1263 193 93 28 chr3_random 2495113 2495403 -5932878 + MLT1A1 LTR MaLR 1 309 -56 657 298 98 60 chr3_random 2495425 2495791 -5932490 + L2 LINE L2 2665 3016 -297 218 79 0 26 chr3_random 2495791 2495829 -5932452 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1707 139 53 0 chr3_random 2495829 2496095 -5932186 - AluJb SINE Alu -32 280 1 657 298 98 60 chr3_random 2496095 2496363 -5931918 + L2 LINE L2 3015 3306 -7 1180 225 34 76 chr3_random 2497663 2498019 -5930262 + MER58B DNA MER1_type 1 341 0 435 137 16 33 chr3_random 2498443 2498625 -5929656 + (TA)n Simple_repeat Simple_repeat 2 180 0 331 339 39 44 chr3_random 2499336 2499516 -5928765 - MIR SINE MIR -66 196 18 240 185 0 0 chr3_random 2500390 2500444 -5927837 + CT-rich Low_complexity Low_complexity 4 57 0 660 115 137 14 chr3_random 2500989 2501128 -5927153 + L1PA10 LINE L1 4908 5063 -1083 5806 115 11 16 chr3_random 2501156 2501987 -5926294 + L1PA10 LINE L1 5003 5830 -338 4798 128 36 8 chr3_random 2501987 2502746 -5925535 - LTR17 LTR ERV1 0 780 1 5806 115 11 16 chr3_random 2502746 2503084 -5925197 + L1PA10 LINE L1 5830 6168 0 383 290 88 41 chr3_random 2503111 2503350 -5924931 + L1ME LINE L1 5353 5608 -513 24 75 0 0 chr3_random 2503518 2503558 -5924723 + AT_rich Low_complexity Low_complexity 1 40 0 221 381 0 21 chr3_random 2503983 2504080 -5924201 + MER5A DNA MER1_type 88 182 -7 510 361 112 16 chr3_random 2504268 2504550 -5923731 + L2 LINE L2 2370 2624 -690 2824 173 36 41 chr3_random 2504550 2505164 -5923117 + LTR36 LTR ERV1 1 611 0 510 361 112 16 chr3_random 2505164 2505290 -5922991 + L2 LINE L2 2624 2737 -577 5704 80 60 0 chr3_random 2505290 2506069 -5922212 + LTR12 LTR ERV1 1 826 0 510 361 112 16 chr3_random 2506069 2506213 -5922068 + L2 LINE L2 2737 2976 -338 288 243 14 14 chr3_random 2506524 2506598 -5921683 - MLT1L LTR MaLR -539 76 3 232 282 137 23 chr3_random 2507349 2507480 -5920801 + MIR SINE MIR 40 185 -77 199 365 157 26 chr3_random 2507448 2507563 -5920718 + L2 LINE L2 3138 3267 -5 * 1050 210 118 38 chr3_random 2507638 2507794 -5920487 - LTR54B LTR ERV1 0 510 368 261 0 0 0 chr3_random 2507794 2507823 -5920458 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1050 210 118 38 chr3_random 2507823 2508095 -5920186 - LTR54B LTR ERV1 -142 368 75 294 343 71 39 chr3_random 2510690 2511227 -5917054 + HAL1b LINE L1 84 637 -711 1321 248 67 58 chr3_random 2511553 2512171 -5916110 + L1MC5 LINE L1 6638 7176 -785 404 314 85 57 chr3_random 2512346 2512677 -5915604 - L1ME4a LINE L1 -253 5868 5529 325 222 48 0 chr3_random 2512711 2512774 -5915507 - MER2 DNA MER2_type 0 345 280 345 82 0 0 chr3_random 2512774 2512823 -5915458 + (CA)n Simple_repeat Simple_repeat 2 50 0 2253 92 3 0 chr3_random 2514583 2514887 -5913394 - AluSp SINE Alu 0 305 1 1862 160 45 25 chr3_random 2515374 2515730 -5912551 + MLT1A1 LTR MaLR 3 365 0 2286 97 0 3 chr3_random 2516295 2516593 -5911688 - AluSg SINE Alu -13 297 1 235 323 32 48 chr3_random 2516644 2516768 -5911513 + L2 LINE L2 3184 3305 -8 218 296 142 37 chr3_random 2517291 2517453 -5910828 - L2 LINE L2 0 3313 3135 336 102 0 0 chr3_random 2517554 2517603 -5910678 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 687 274 43 17 chr3_random 2517603 2517833 -5910448 - MER106A DNA MER1_type 0 236 1 672 237 156 44 chr3_random 2518127 2518448 -5909833 - MLT1J LTR MaLR -146 365 9 25 0 0 0 chr3_random 2518524 2518549 -5909732 + AT_rich Low_complexity Low_complexity 1 25 0 496 207 0 0 chr3_random 2520880 2520967 -5907314 - FLAM_A SINE Alu -46 96 10 1781 171 110 3 chr3_random 2521345 2521701 -5906580 + MSTD LTR MaLR 1 394 -2 2342 215 52 55 chr3_random 2521831 2522486 -5905795 + MLT1E1 LTR MaLR 1 653 -1 33 25 0 0 chr3_random 2522587 2522627 -5905654 + AT_rich Low_complexity Low_complexity 1 40 0 20520 169 15 18 chr3_random 2522721 2528138 -5900143 - L1PA10 LINE L1 -4 6815 1408 1148 298 227 17 chr3_random 2528152 2528676 -5899605 - L1PA10 LINE L1 -5529 1258 625 189 388 19 0 chr3_random 2529455 2529558 -5898723 + L2 LINE L2 3008 3112 -160 417 297 8 17 chr3_random 2531143 2531261 -5897020 - MER5A DNA MER1_type -12 177 61 2136 169 11 49 chr3_random 2531333 2531782 -5896499 - MSTB1 LTR MaLR 0 432 1 263 333 180 20 chr3_random 2531798 2531948 -5896333 + MER5A DNA MER1_type 14 187 -2 1635 167 21 18 chr3_random 2532244 2532567 -5895714 + AluJb SINE Alu 1 324 0 1071 162 22 18 chr3_random 2532585 2532814 -5895467 + L1MA4 LINE L1 6063 6292 -8 25 0 0 0 chr3_random 2533197 2533222 -5895059 + AT_rich Low_complexity Low_complexity 1 25 0 241 333 53 53 chr3_random 2533995 2534145 -5894136 + MER5B DNA MER1_type 29 178 0 348 269 26 0 chr3_random 2534234 2534312 -5893969 + MER5B DNA MER1_type 46 125 -53 894 206 27 0 chr3_random 2534513 2534697 -5893584 - MER5A DNA MER1_type 0 189 1 955 284 30 8 chr3_random 2534824 2535060 -5893221 - MIR SINE MIR -4 258 18 348 269 26 0 chr3_random 2535179 2535257 -5893024 - MER5B DNA MER1_type -53 125 46 285 280 85 25 chr3_random 2535728 2535964 -5892317 + L1M4 LINE L1 2744 2993 -3153 791 324 68 44 chr3_random 2536063 2536267 -5892014 + L1MEc LINE L1 37 234 -6162 396 0 0 0 chr3_random 2536267 2536311 -5891970 + (TG)n Simple_repeat Simple_repeat 1 44 0 791 324 68 44 chr3_random 2536311 2536792 -5891489 + L1MEc LINE L1 234 739 -5657 2162 105 0 26 chr3_random 2536808 2537114 -5891167 + AluSg SINE Alu 1 298 -12 1061 256 16 55 chr3_random 2537141 2537523 -5890758 + L1MEc LINE L1 1517 1883 -4513 375 219 12 0 chr3_random 2537769 2537851 -5890430 - MER58B DNA MER1_type -15 326 244 2031 146 0 10 chr3_random 2537854 2538163 -5890118 + AluSx SINE Alu 1 306 -6 418 250 111 6 chr3_random 2538377 2538549 -5889732 - L1MEd LINE L1 -5295 824 635 31 44 0 0 chr3_random 2538549 2538594 -5889687 + AT_rich Low_complexity Low_complexity 1 45 0 2304 303 34 56 chr3_random 2539850 2540847 -5887434 + L1PA15 LINE L1 2 1450 -5337 14089 219 20 29 chr3_random 2540881 2541430 -5886851 + L1PA15 LINE L1 1440 1993 -4823 11757 85 1 11 chr3_random 2541430 2543808 -5884473 + L1PA7 LINE L1 3784 6152 -2 14089 219 20 29 chr3_random 2543808 2545756 -5882525 + L1PA15 LINE L1 1993 3958 -2858 1968 155 7 3 chr3_random 2545756 2546060 -5882221 + AluJb SINE Alu 5 309 -3 14089 219 20 29 chr3_random 2546060 2547124 -5881157 + L1PA15 LINE L1 3958 5030 -1786 2423 90 3 0 chr3_random 2547124 2547434 -5880847 + AluSq SINE Alu 1 311 -2 14089 219 20 29 chr3_random 2547434 2549232 -5879049 + L1PA15 LINE L1 5030 6815 -1 1222 198 9 0 chr3_random 2549283 2549505 -5878776 - MER58A DNA MER1_type 0 224 1 233 333 17 8 chr3_random 2549673 2549790 -5878491 + MER103 DNA DNA 1 118 -48 291 217 48 90 chr3_random 2552996 2553127 -5875154 - MIR SINE MIR -92 116 31 602 212 103 24 chr3_random 2553937 2554102 -5874179 + MLT1B LTR MaLR 1 178 -212 1617 232 0 23 chr3_random 2554103 2554456 -5873825 + L1PB4 LINE L1 5806 6150 -6 278 107 18 0 chr3_random 2554456 2554512 -5873769 + (TA)n Simple_repeat Simple_repeat 1 57 0 640 176 34 30 chr3_random 2554541 2554702 -5873579 + MLT1B LTR MaLR 227 390 0 1601 184 42 52 chr3_random 2556421 2556806 -5871475 - MLT1B LTR MaLR -9 381 1 201 200 20 20 chr3_random 2557942 2557992 -5870289 + CT-rich Low_complexity Low_complexity 2 51 0 22 56 0 0 chr3_random 2558572 2558608 -5869673 + AT_rich Low_complexity Low_complexity 1 36 0 7200 188 25 12 chr3_random 2559597 2561997 -5866284 - L1MA7 LINE L1 -2 6493 4058 1010 241 52 43 chr3_random 2562000 2562328 -5865953 - L1MA7 LINE L1 -5950 331 1 890 235 23 14 chr3_random 2562584 2562801 -5865480 - MER20 DNA MER1_type 0 219 1 418 294 128 28 chr3_random 2562890 2563101 -5865180 + MIR SINE MIR 31 262 0 1044 74 25 6 chr3_random 2563427 2563590 -5864691 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 187 176 15 15 chr3_random 2564579 2564647 -5863634 + (TA)n Simple_repeat Simple_repeat 2 69 0 282 318 91 0 chr3_random 2564722 2564832 -5863449 - L2 LINE L2 0 3272 3153 274 310 0 0 chr3_random 2565089 2565160 -5863121 - HAL1 LINE L1 -2029 478 408 310 240 50 50 chr3_random 2565246 2565346 -5862935 - HAL1 LINE L1 -2339 168 69 213 65 0 0 chr3_random 2566112 2566143 -5862138 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1125 174 47 47 chr3_random 2566145 2566380 -5861901 - AluJb SINE Alu -77 235 1 239 91 0 0 chr3_random 2566436 2566469 -5861812 - MADE1 DNA Mariner -2 78 46 482 319 7 7 chr3_random 2566486 2566630 -5861651 + MER5B DNA MER1_type 35 178 0 225 0 0 0 chr3_random 2567789 2567814 -5860467 + (T)n Simple_repeat Simple_repeat 1 25 0 24 85 0 0 chr3_random 2568012 2568071 -5860210 + AT_rich Low_complexity Low_complexity 1 59 0 1078 176 43 19 chr3_random 2568105 2568315 -5859966 + MER20 DNA MER1_type 2 216 -3 2423 109 58 21 chr3_random 2569755 2570187 -5858094 - LTR7 LTR ERV1 -2 448 1 668 272 89 37 chr3_random 2570735 2570856 -5857425 + MIR SINE MIR 4 117 -145 607 292 41 18 chr3_random 2570856 2571075 -5857206 + MER58A DNA MER1_type 1 224 0 668 272 89 37 chr3_random 2571075 2571199 -5857082 + MIR SINE MIR 117 262 0 21 89 0 0 chr3_random 2572553 2572609 -5855672 + AT_rich Low_complexity Low_complexity 1 56 0 1370 215 0 11 chr3_random 2572723 2573002 -5855279 - AluJo SINE Alu 0 312 37 506 274 29 46 chr3_random 2574373 2574548 -5853733 + MIR SINE MIR 91 262 0 29 0 0 0 chr3_random 2574572 2574601 -5853680 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr3_random 2574862 2574886 -5853395 + (TG)n Simple_repeat Simple_repeat 1 24 0 2943 263 15 47 chr3_random 2574983 2575896 -5852385 + L1PA15 LINE L1 1 884 -5903 14870 226 30 16 chr3_random 2575927 2577640 -5850641 + L1PA15 LINE L1 1212 2899 -3917 180 0 0 0 chr3_random 2577640 2577660 -5850621 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 14870 226 30 16 chr3_random 2577660 2581457 -5846824 + L1PA15 LINE L1 2899 6816 0 2252 85 25 6 chr3_random 2581744 2582063 -5846218 + L1PA6 LINE L1 5822 6146 -8 729 284 53 0 chr3_random 2582137 2582345 -5845936 + MIR SINE MIR 1 219 -43 22 80 0 0 chr3_random 2582411 2582461 -5845820 + AT_rich Low_complexity Low_complexity 1 50 0 398 289 82 58 chr3_random 2582511 2583002 -5845279 - L1MEd LINE L1 -4975 1144 597 5683 125 16 1 chr3_random 2583266 2584099 -5844182 + THE1B-int LTR MaLR 736 1580 0 2209 159 8 0 chr3_random 2584099 2584458 -5843823 + THE1B LTR MaLR 1 362 -2 25 0 0 0 chr3_random 2587409 2587434 -5840847 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr3_random 2587622 2587657 -5840624 + AT_rich Low_complexity Low_complexity 1 35 0 35 41 0 0 chr3_random 2587940 2587989 -5840292 + AT_rich Low_complexity Low_complexity 1 49 0 292 341 140 0 chr3_random 2588332 2588511 -5839770 - MIR SINE MIR -6 256 53 823 31 0 0 chr3_random 2588545 2588642 -5839639 + AluY SINE Alu 205 301 -10 555 291 57 32 chr3_random 2588860 2588934 -5839347 - LTR40b LTR ERVL -4 458 387 243 61 0 0 chr3_random 2588934 2588967 -5839314 + (CA)n Simple_repeat Simple_repeat 1 33 0 555 291 57 32 chr3_random 2588967 2589174 -5839107 - LTR40b LTR ERVL -75 387 170 637 243 112 63 chr3_random 2590343 2590709 -5837572 - HAL1 LINE L1 -443 2064 1681 510 301 15 10 chr3_random 2591090 2591289 -5836992 - HAL1 LINE L1 -854 1653 1454 280 128 4 0 chr3_random 2591475 2591538 -5836743 - L1MA7 LINE L1 0 6291 6237 434 257 164 6 chr3_random 2591637 2591820 -5836461 + HAL1b LINE L1 614 825 -523 300 309 12 0 chr3_random 2592682 2592766 -5835515 - MIR SINE MIR -86 122 38 193 183 48 0 chr3_random 2593675 2593779 -5834502 + (TA)n Simple_repeat Simple_repeat 2 110 0 898 270 9 5 chr3_random 2593962 2594184 -5834097 + MER58A DNA MER1_type 1 223 -1 356 285 131 58 chr3_random 2594214 2594270 -5834011 - MER5B DNA MER1_type -29 149 99 1873 156 140 11 chr3_random 2594270 2594649 -5833632 + MSTA LTR MaLR 1 428 0 356 285 131 58 chr3_random 2594649 2594729 -5833552 - MER5B DNA MER1_type -79 99 3 2019 125 0 14 chr3_random 2595525 2595822 -5832459 + AluY SINE Alu 1 293 -18 7637 22 0 6 chr3_random 2595825 2596761 -5831520 + L1PA3 LINE L1 5225 6155 0 40 21 0 0 chr3_random 2596857 2596904 -5831377 + AT_rich Low_complexity Low_complexity 1 47 0 274 382 68 21 chr3_random 2597271 2597611 -5830670 - L2 LINE L2 -502 2812 2457 4136 227 82 1 chr3_random 2599210 2600105 -5828176 + L1PA13 LINE L1 1 967 -5820 5350 223 84 17 chr3_random 2600115 2601892 -5826389 + L1PA13 LINE L1 1013 2929 -3868 1389 52 0 6 chr3_random 2601892 2602063 -5826218 + L1PA5 LINE L1 5976 6146 -8 351 0 0 0 chr3_random 2602063 2602102 -5826179 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 14913 187 26 3 chr3_random 2602102 2605284 -5822997 + L1PA13 LINE L1 2931 6175 -639 2334 91 0 16 chr3_random 2605284 2605602 -5822679 + AluSp SINE Alu 1 313 0 14913 187 26 3 chr3_random 2605602 2606246 -5822035 + L1PA13 LINE L1 6175 6803 -11 24 0 0 0 chr3_random 2606758 2606782 -5821499 + AT_rich Low_complexity Low_complexity 1 24 0 2561 120 73 22 chr3_random 2607068 2607575 -5820706 + L1MA8 LINE L1 5759 6291 0 485 308 147 55 chr3_random 2607705 2608066 -5820215 - L2 LINE L2 -36 3277 2884 316 347 105 32 chr3_random 2608592 2608782 -5819499 + MIR SINE MIR 49 252 -10 21 0 0 0 chr3_random 2609677 2609698 -5818583 + AT_rich Low_complexity Low_complexity 1 21 0 1165 155 5 26 chr3_random 2610361 2610553 -5817728 - MER1B DNA MER1_type 0 339 152 922 247 199 7 chr3_random 2610553 2610840 -5817441 + LTR28 LTR ERV1 1 342 -678 522 253 32 65 chr3_random 2610849 2611020 -5817261 + MER61D LTR ERV1 339 1229 -19 698 222 26 9 chr3_random 2611207 2611347 -5816934 - MER1B DNA MER1_type -140 157 1 192 100 40 20 chr3_random 2612524 2612574 -5815707 + A-rich Low_complexity Low_complexity 3 53 0 37 0 0 0 chr3_random 2612625 2612662 -5815619 + AT_rich Low_complexity Low_complexity 1 37 0 2103 58 4 8 chr3_random 2613127 2613385 -5814896 - AluY SINE Alu -50 261 5 236 109 0 43 chr3_random 2616125 2616171 -5812110 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 29 0 0 0 chr3_random 2617638 2617667 -5810614 + AT_rich Low_complexity Low_complexity 1 29 0 433 287 33 8 chr3_random 2619266 2619388 -5808893 - L2 LINE L2 0 3313 3189 186 43 0 0 chr3_random 2619898 2619921 -5808360 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 320 292 81 44 chr3_random 2621037 2621226 -5807055 - MIR SINE MIR -50 212 20 212 100 25 0 chr3_random 2622312 2622352 -5805929 + (TA)n Simple_repeat Simple_repeat 1 41 0 273 341 104 28 chr3_random 2622869 2623051 -5805230 - MIR3 SINE MIR -5 203 8 263 324 0 0 chr3_random 2625012 2625080 -5803201 - MIR3 SINE MIR -49 159 92 207 191 0 0 chr3_random 2626119 2626161 -5802120 + T-rich Low_complexity Low_complexity 1 42 0 1754 204 134 89 chr3_random 2626303 2627091 -5801190 - LTR1B LTR ERV1 0 826 3 14037 199 32 43 chr3_random 2627093 2630200 -5798081 - HUERS-P2 LTR ERV1 0 3088 75 1252 234 63 75 chr3_random 2630336 2631099 -5797182 - LTR1B LTR ERV1 0 826 1 502 272 15 0 chr3_random 2632651 2632787 -5795494 - MLT1H LTR MaLR -3 546 409 632 99 0 0 chr3_random 2632828 2632919 -5795362 - L1P LINE L1 -1302 4844 4754 394 251 63 99 chr3_random 2632944 2633167 -5795114 - MLT1H LTR MaLR -214 335 121 6690 86 1 3 chr3_random 2633514 2634991 -5793290 + L1PA8 LINE L1 4697 6172 0 195 204 0 0 chr3_random 2635648 2635697 -5792584 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 158 0 0 chr3_random 2636713 2636751 -5791530 + L2 LINE L2 3272 3309 -4 1827 184 36 0 chr3_random 2636867 2637199 -5791082 - MER2 DNA MER2_type 0 344 1 265 182 81 81 chr3_random 2637544 2637643 -5790638 + MIR SINE MIR 86 184 -78 218 348 26 0 chr3_random 2637874 2637989 -5790292 + L2 LINE L2 3112 3229 -84 316 273 61 20 chr3_random 2638047 2638146 -5790135 - MER5A DNA MER1_type 0 189 87 1705 216 28 3 chr3_random 2638984 2639340 -5788941 - MLT1A1 LTR MaLR 0 365 1 249 324 0 0 chr3_random 2640094 2640162 -5788119 - Charlie8 DNA MER1_type -8 2409 2342 645 310 39 30 chr3_random 2640179 2640514 -5787767 - Charlie8 DNA MER1_type -2006 411 74 1225 284 127 17 chr3_random 2641681 2642152 -5786129 - MLT1G1 LTR MaLR 0 595 73 2484 136 8 11 chr3_random 2642291 2642667 -5785614 - THE1C LTR MaLR 0 375 1 211 275 44 132 chr3_random 2642993 2643175 -5785106 + MIR SINE MIR 47 212 -50 2025 131 42 53 chr3_random 2643525 2643884 -5784397 - THE1B LTR MaLR -2 362 8 309 250 29 0 chr3_random 2646474 2646542 -5781739 + Charlie5 DNA MER1_type 1 70 -2542 * 726 152 33 7 chr3_random 2646540 2646691 -5781590 + Charlie5 DNA MER1_type 2430 2584 -28 23 0 0 0 chr3_random 2647326 2647349 -5780932 + AT_rich Low_complexity Low_complexity 1 23 0 482 279 102 40 chr3_random 2647492 2647741 -5780540 - L1ME4a LINE L1 -1 6120 5888 1584 118 57 65 chr3_random 2647741 2648020 -5780261 + AluSx SINE Alu 21 297 -15 482 279 102 40 chr3_random 2648020 2648341 -5779940 - L1ME4a LINE L1 -233 5888 5515 32 75 0 0 chr3_random 2648448 2648515 -5779766 + AT_rich Low_complexity Low_complexity 1 67 0 345 300 75 78 chr3_random 2650110 2650430 -5777851 - ERVL LTR ERVL -435 5329 5011 424 320 51 13 chr3_random 2651106 2651382 -5776899 - ERVL LTR ERVL -1250 4235 3967 957 318 67 21 chr3_random 2651639 2652114 -5776167 - ERVL LTR ERVL -2096 3389 2893 791 347 87 35 chr3_random 2652227 2652951 -5775330 - ERVL LTR ERVL -2270 2726 1965 2123 172 21 18 chr3_random 2653081 2653241 -5775040 + MLT1B LTR MaLR 1 159 -231 2044 150 135 5 chr3_random 2653241 2653620 -5774661 + MSTA LTR MaLR 1 428 0 2123 172 21 18 chr3_random 2653620 2653848 -5774433 + MLT1B LTR MaLR 159 390 0 1689 157 173 16 chr3_random 2654417 2654787 -5773494 + MSTA LTR MaLR 1 428 0 8983 145 29 36 chr3_random 2654789 2656371 -5771910 + MSTA-int LTR MaLR 3 1573 -7 1236 127 216 4 chr3_random 2656378 2656623 -5771658 + MSTA LTR MaLR 1 297 -131 586 368 36 11 chr3_random 2657119 2657396 -5770885 - LTR16C LTR ERVL -90 401 118 1216 233 3 22 chr3_random 2658096 2658380 -5769901 + L1PB4 LINE L1 5892 6299 -2 310 250 36 0 chr3_random 2658831 2658915 -5769366 + MLT1L LTR MaLR 529 615 0 1669 237 36 36 chr3_random 2658983 2659480 -5768801 - L1ME1 LINE L1 -4 6162 5666 438 267 31 21 chr3_random 2659516 2659707 -5768574 - L1ME1 LINE L1 -1123 5023 4831 6194 219 28 7 chr3_random 2659710 2660977 -5767304 - THE1C-int LTR MaLR -353 1298 5 2330 141 6 16 chr3_random 2660981 2661344 -5766937 - THE1C LTR MaLR -16 359 1 981 288 62 27 chr3_random 2661397 2661626 -5766655 - L1ME1 LINE L1 -2453 3693 3473 1072 184 24 5 chr3_random 2661626 2661832 -5766449 - MER6B DNA MER2_type 0 210 1 981 288 62 27 chr3_random 2661832 2662266 -5766015 - L1ME1 LINE L1 -2673 3473 3007 198 0 0 0 chr3_random 2662731 2662753 -5765528 + (CA)n Simple_repeat Simple_repeat 2 23 0 2400 83 3 3 chr3_random 2662842 2663143 -5765138 - AluSp SINE Alu -11 302 2 4401 135 3 8 chr3_random 2664664 2665370 -5762911 + L1PA13 LINE L1 5461 6162 -1 1287 259 106 24 chr3_random 2666181 2666644 -5761637 + MLT1D LTR MaLR 1 501 -4 194 62 31 0 chr3_random 2666974 2667006 -5761275 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 309 325 121 9 chr3_random 2667076 2667307 -5760974 + L1M2 LINE L1 1659 1915 -4934 1959 141 42 67 chr3_random 2668826 2669169 -5759112 - Tigger2 DNA MER2_type -2121 597 264 665 231 0 0 chr3_random 2669169 2669299 -5758982 - FLAM_C SINE Alu -2 131 2 1959 141 42 67 chr3_random 2669299 2669359 -5758922 - Tigger2 DNA MER2_type -2454 264 204 244 327 77 36 chr3_random 2669757 2669925 -5758356 - MIR3 SINE MIR -15 193 19 1603 195 30 28 chr3_random 2670045 2670409 -5757872 + MLT1A1 LTR MaLR 1 365 0 227 265 159 45 chr3_random 2670437 2670569 -5757712 + MIR3 SINE MIR 39 185 -23 25 0 0 0 chr3_random 2671290 2671315 -5756966 + AT_rich Low_complexity Low_complexity 1 25 0 378 370 23 0 chr3_random 2673313 2673486 -5754795 + ERVL LTR ERVL 1492 1668 -4096 3724 105 0 4 chr3_random 2673543 2674056 -5754225 + MER9 LTR ERVK 1 511 0 266 390 7 7 chr3_random 2674218 2674372 -5753909 + ERVL LTR ERVL 1906 2059 -3705 832 330 82 17 chr3_random 2674488 2674900 -5753381 + ERVL LTR ERVL 2291 2729 -3035 23 33 0 0 chr3_random 2675383 2675413 -5752868 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3_random 2676444 2676477 -5751804 + AT_rich Low_complexity Low_complexity 1 33 0 29 0 0 0 chr3_random 2676522 2676551 -5751730 + AT_rich Low_complexity Low_complexity 1 29 0 1253 320 69 57 chr3_random 2677979 2678743 -5749538 - ERVL LTR ERVL -1127 4637 3860 293 0 27 0 chr3_random 2678743 2678780 -5749501 + (CA)n Simple_repeat Simple_repeat 2 39 0 1253 320 69 57 chr3_random 2678780 2678903 -5749378 - ERVL LTR ERVL -1904 3860 3740 415 354 110 4 chr3_random 2678943 2679189 -5749092 - ERVL LTR ERVL -2078 3686 3415 264 267 151 26 chr3_random 2679340 2679572 -5748709 - L1M4 LINE L1 -1163 4983 4723 388 192 51 13 chr3_random 2679965 2680043 -5748238 - Tigger5 DNA MER2_type 0 2323 2243 * 408 241 0 0 chr3_random 2680034 2680113 -5748168 + Tigger5 DNA MER2_type 2242 2320 -3 243 224 0 0 chr3_random 2680113 2680161 -5748120 - Tigger5 DNA MER2_type -2245 78 31 755 185 57 146 chr3_random 2680225 2680678 -5747603 - L1ME2 LINE L1 -9 6155 5743 2138 177 39 18 chr3_random 2680689 2681129 -5747152 - L1PA16 LINE L1 -2 6164 5716 2504 157 52 9 chr3_random 2681136 2681601 -5746680 - L1PA15 LINE L1 -204 6664 6180 693 168 0 0 chr3_random 2681607 2681720 -5746561 - L1PA15 LINE L1 -3911 2938 2826 5164 58 25 0 chr3_random 2681724 2682377 -5745904 - L1PA7 LINE L1 -8 6146 5478 556 93 36 21 chr3_random 2682377 2682517 -5745764 + (TA)n Simple_repeat Simple_repeat 2 143 0 7147 43 11 3 chr3_random 2682517 2683994 -5744287 - L1PA4 LINE L1 -11 6144 4660 12505 64 1 1 chr3_random 2684113 2686529 -5741752 + L1PA6 LINE L1 3719 6154 0 22 0 0 0 chr3_random 2686941 2686963 -5741318 + AT_rich Low_complexity Low_complexity 1 22 0 208 147 0 0 chr3_random 2687111 2687145 -5741136 + (T)n Simple_repeat Simple_repeat 1 34 0 3677 198 23 46 chr3_random 2687264 2688522 -5739759 - L1PB3 LINE L1 -4 6150 4924 227 98 39 59 chr3_random 2688669 2688720 -5739561 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 253 308 67 17 chr3_random 2688845 2688965 -5739316 - L2 LINE L2 -8 3305 3180 211 340 40 67 chr3_random 2689155 2689408 -5738873 - L2 LINE L2 -414 2900 2655 864 306 23 17 chr3_random 2689597 2689898 -5738383 + MER93a LTR ERV1 93 395 -7 1288 239 31 29 chr3_random 2690234 2690615 -5737666 - MLT1C LTR MaLR -85 382 1 200 275 0 0 chr3_random 2691450 2691519 -5736762 + T-rich Low_complexity Low_complexity 1 69 0 268 282 18 64 chr3_random 2691606 2691716 -5736565 - MIR SINE MIR -109 153 49 1469 204 15 6 chr3_random 2691825 2692149 -5736132 + L1MC2 LINE L1 4538 4864 -1282 533 255 117 5 chr3_random 2692472 2692660 -5735621 - LTR33 LTR ERVL -307 214 6 30 45 0 0 chr3_random 2693168 2693212 -5735069 + AT_rich Low_complexity Low_complexity 1 44 0 1568 171 185 3 chr3_random 2694919 2695281 -5733000 + MSTA LTR MaLR 1 428 0 7262 138 22 61 chr3_random 2695283 2696609 -5731672 + MSTA-int LTR MaLR 3 1286 -294 2637 143 9 5 chr3_random 2696621 2697053 -5731228 + MSTA-int LTR MaLR 1218 1651 0 1487 181 197 25 chr3_random 2697053 2697418 -5730863 + MSTA LTR MaLR 1 428 0 316 290 0 11 chr3_random 2698076 2698169 -5730112 - ERVL LTR ERVL -3220 2544 2453 316 289 23 8 chr3_random 2698216 2698344 -5729937 - ERVL LTR ERVL -3394 2370 2241 2557 20 3 0 chr3_random 2698698 2698994 -5729287 - L1PA3 LINE L1 -379 5776 5480 3225 29 0 0 chr3_random 2698994 2699369 -5728912 + L1PA3 LINE L1 5777 6152 -3 364 266 9 0 chr3_random 2699380 2699489 -5728792 + L1ME3A LINE L1 5170 5279 -867 231 188 0 0 chr3_random 2699487 2699535 -5728746 + L1PA11 LINE L1 6127 6174 0 * 4381 183 26 22 chr3_random 2700105 2701193 -5727088 + L1MC2 LINE L1 5013 6112 -232 567 231 64 21 chr3_random 2701294 2701528 -5726753 + L1MC2 LINE L1 5989 6232 -112 4178 226 16 10 chr3_random 2702435 2703480 -5724801 + L1 LINE L1 3140 4191 -1955 189 240 0 0 chr3_random 2703859 2703909 -5724372 - MER5C DNA MER1_type -200 124 75 1078 191 66 0 chr3_random 2704004 2704277 -5724004 - L1 LINE L1 -2676 3470 3180 918 253 76 9 chr3_random 2704301 2704629 -5723652 + L1ME3A LINE L1 5689 6038 -132 182 91 30 0 chr3_random 2704666 2704699 -5723582 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 24 0 0 0 chr3_random 2705012 2705036 -5723245 + AT_rich Low_complexity Low_complexity 1 24 0 630 304 31 18 chr3_random 2705329 2705556 -5722725 + MIR SINE MIR 33 262 0 252 256 0 26 chr3_random 2705687 2705765 -5722516 + GA-rich Low_complexity Low_complexity 5 80 0 2510 184 72 31 chr3_random 2705811 2706424 -5721857 + L1MA9 LINE L1 5675 6312 0 1052 302 20 34 chr3_random 2706551 2706909 -5721372 + LTR16B LTR ERVL 108 460 -4 1385 101 106 0 chr3_random 2707050 2707258 -5721023 + MER30 DNA MER1_type 1 230 0 301 380 0 0 chr3_random 2707741 2707841 -5720440 + L2 LINE L2 2544 2643 -671 2565 107 16 0 chr3_random 2707874 2708238 -5720043 - L1P3 LINE L1 -5401 1060 691 202 256 60 3 chr3_random 2708251 2708391 -5719890 + MIR SINE MIR 75 261 -1 254 154 0 0 chr3_random 2708517 2708556 -5719725 - L2 LINE L2 -8 3305 3267 401 367 67 25 chr3_random 2709007 2709454 -5718827 - L2 LINE L2 -217 3055 2579 196 353 101 8 chr3_random 2709518 2709637 -5718644 + L2 LINE L2 3143 3272 0 416 319 72 18 chr3_random 2709658 2709937 -5718344 - L2 LINE L2 -778 2536 2243 681 290 61 14 chr3_random 2709986 2710200 -5718081 - MIR SINE MIR -38 224 1 394 338 107 11 chr3_random 2710354 2710626 -5717655 - L2 LINE L2 -1245 2069 1772 194 384 14 29 chr3_random 2710844 2710982 -5717299 - L2 LINE L2 -1863 1451 1316 519 354 29 32 chr3_random 2711186 2711365 -5716916 - L2 LINE L2 -2735 579 400 1225 191 60 106 chr3_random 2711365 2711405 -5716876 - MLT2D LTR ERVL 0 414 374 264 100 0 0 chr3_random 2711405 2711445 -5716836 + (TG)n Simple_repeat Simple_repeat 2 41 0 1225 191 60 106 chr3_random 2711445 2711838 -5716443 - MLT2D LTR ERVL -40 374 1 519 354 29 32 chr3_random 2711838 2711938 -5716343 - L2 LINE L2 -2914 400 301 186 43 0 0 chr3_random 2712435 2712458 -5715823 + (T)n Simple_repeat Simple_repeat 1 23 0 186 311 78 68 chr3_random 2712607 2712710 -5715571 - L2 LINE L2 -9 3263 3160 1668 232 48 40 chr3_random 2712889 2713385 -5714896 - MLT1D LTR MaLR -5 500 1 246 265 15 0 chr3_random 2713631 2713699 -5714582 + L2 LINE L2 3168 3236 -36 33 43 0 0 chr3_random 2713754 2713801 -5714480 + AT_rich Low_complexity Low_complexity 1 47 0 316 362 25 6 chr3_random 2713807 2713970 -5714311 + MIR SINE MIR 84 249 -13 539 287 32 13 chr3_random 2714220 2714377 -5713904 + MLT1E LTR MaLR 1 160 -433 1625 251 81 45 chr3_random 2714378 2714481 -5713800 - MLT1E2 LTR MaLR -2 624 526 2320 79 0 0 chr3_random 2714481 2714772 -5713509 + AluSc SINE Alu 1 291 -18 1625 251 81 45 chr3_random 2714772 2715261 -5713020 - MLT1E2 LTR MaLR -100 526 11 21 0 0 0 chr3_random 2715275 2715296 -5712985 + AT_rich Low_complexity Low_complexity 1 21 0 1173 254 80 23 chr3_random 2715296 2715694 -5712587 + MLT1E LTR MaLR 173 593 0 276 324 37 19 chr3_random 2715703 2715811 -5712470 - MER5A DNA MER1_type -73 116 7 420 220 199 73 chr3_random 2717062 2717253 -5711028 + MER58C DNA MER1_type 1 215 0 763 372 20 57 chr3_random 2717327 2717733 -5710548 - MLT1B LTR MaLR -6 373 2 222 421 9 9 chr3_random 2717798 2717905 -5710376 - MIR3 SINE MIR -87 121 15 768 139 0 0 chr3_random 2718465 2718587 -5709694 + L1PA16 LINE L1 5869 5990 -176 875 193 62 45 chr3_random 2718587 2718831 -5709450 - MER1B DNA MER1_type -91 248 1 766 169 110 0 chr3_random 2718831 2718985 -5709296 + L1PA16 LINE L1 5987 6157 -9 375 228 0 0 chr3_random 2718990 2719082 -5709199 + (TA)n Simple_repeat Simple_repeat 1 92 0 294 217 50 17 chr3_random 2719119 2719239 -5709042 + (TA)n Simple_repeat Simple_repeat 1 124 0 33 25 0 0 chr3_random 2721144 2721184 -5707097 + AT_rich Low_complexity Low_complexity 1 40 0 547 289 30 15 chr3_random 2721326 2721527 -5706754 - L1ME1 LINE L1 -14 6152 5949 5977 175 17 0 chr3_random 2721630 2723510 -5704771 + L1PB1 LINE L1 4235 6148 -3 21 89 0 0 chr3_random 2723721 2723777 -5704504 + AT_rich Low_complexity Low_complexity 1 56 0 557 197 29 22 chr3_random 2723799 2723936 -5704345 - L1M4 LINE L1 -869 5277 5140 3026 340 49 38 chr3_random 2723937 2726573 -5701708 - HERV16 LTR ERVL -1388 4266 1548 535 322 89 10 chr3_random 2727119 2727411 -5700870 - HERV16 LTR ERVL -4633 363 49 200 296 0 14 chr3_random 2727970 2728041 -5700240 + CT-rich Low_complexity Low_complexity 2 71 0 21 36 0 0 chr3_random 2728814 2728842 -5699439 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr3_random 2729522 2729543 -5698738 + (T)n Simple_repeat Simple_repeat 1 21 0 541 56 0 0 chr3_random 2729543 2729614 -5698667 - LTR17 LTR ERV1 -454 326 256 706 281 14 14 chr3_random 2730880 2731090 -5697191 + MER63A DNA MER1_type 1 210 0 1322 297 54 7 chr3_random 2731098 2731562 -5696719 + LTR16C LTR ERVL 2 487 -4 2210 117 0 0 chr3_random 2731841 2732140 -5696141 - AluSq SINE Alu -14 299 1 230 0 33 0 chr3_random 2733701 2733731 -5694550 + (TG)n Simple_repeat Simple_repeat 2 32 0 269 296 74 19 chr3_random 2734515 2734623 -5693658 + MIR SINE MIR 77 190 -72 * 670 333 106 25 chr3_random 2734587 2735104 -5693177 - L2 LINE L2 -787 2527 1969 573 360 80 29 chr3_random 2735121 2735800 -5692481 + L2 LINE L2 2563 3269 -3 259 164 15 15 chr3_random 2736121 2736188 -5692093 + CT-rich Low_complexity Low_complexity 2 68 0 219 69 0 0 chr3_random 2736334 2736363 -5691918 + (TA)n Simple_repeat Simple_repeat 1 29 0 400 309 8 8 chr3_random 2736778 2736901 -5691380 - MLT1G LTR MaLR -28 562 440 380 266 109 41 chr3_random 2736921 2737186 -5691095 - MLT1H1 LTR MaLR -300 255 1 23 33 0 0 chr3_random 2737650 2737680 -5690601 + AT_rich Low_complexity Low_complexity 1 30 0 203 233 0 0 chr3_random 2738522 2738565 -5689716 + CT-rich Low_complexity Low_complexity 2 44 0 279 389 7 7 chr3_random 2738674 2738813 -5689468 - MLT1K LTR MaLR -294 294 156 234 115 49 0 chr3_random 2738924 2738985 -5689296 + (TA)n Simple_repeat Simple_repeat 1 64 0 945 92 0 0 chr3_random 2739667 2739787 -5688494 - AluSq/x SINE Alu -180 133 14 1286 109 0 0 chr3_random 2739805 2739980 -5688301 - AluSg/x SINE Alu 0 310 136 21 0 0 0 chr3_random 2740165 2740186 -5688095 + AT_rich Low_complexity Low_complexity 1 21 0 514 294 76 41 chr3_random 2741424 2741621 -5686660 + MIR SINE MIR 49 252 -10 301 21 21 21 chr3_random 2741746 2741793 -5686488 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 263 341 38 8 chr3_random 2742459 2742591 -5685690 + ERVL LTR ERVL 4025 4160 -1604 24 53 0 0 chr3_random 2742881 2742919 -5685362 + AT_rich Low_complexity Low_complexity 1 38 0 2204 131 0 0 chr3_random 2743169 2743482 -5684799 + AluSq SINE Alu 1 313 0 359 341 169 31 chr3_random 2744131 2744480 -5683801 - L3 LINE CR1 -1 1576 1180 283 241 0 0 chr3_random 2745082 2745165 -5683116 + L1PB4 LINE L1 6074 6156 0 1035 297 77 30 chr3_random 2745325 2745986 -5682295 - L1MC4 LINE L1 -221 7821 6966 1985 91 37 57 chr3_random 2745986 2746284 -5681997 - AluSg SINE Alu -18 292 1 1035 297 77 30 chr3_random 2746284 2746353 -5681928 - L1MC4 LINE L1 -1076 6966 6902 292 203 0 0 chr3_random 2746357 2746416 -5681865 - MER41B LTR ERV1 -94 541 483 917 243 23 160 chr3_random 2746418 2746948 -5681333 - L1MC4 LINE L1 -1111 6931 6439 306 67 0 0 chr3_random 2748060 2748105 -5680176 + (CA)n Simple_repeat Simple_repeat 2 46 0 326 258 10 16 chr3_random 2748499 2748693 -5679588 + CT-rich Low_complexity Low_complexity 1 192 0 391 217 0 49 chr3_random 2748720 2748904 -5679377 + CT-rich Low_complexity Low_complexity 3 177 0 223 83 0 28 chr3_random 2748904 2748940 -5679341 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 732 195 17 0 chr3_random 2748940 2749114 -5679167 + CT-rich Low_complexity Low_complexity 4 180 0 205 275 0 14 chr3_random 2749117 2749186 -5679095 + T-rich Low_complexity Low_complexity 2 69 0 2072 133 0 0 chr3_random 2749836 2750137 -5678144 - AluSx SINE Alu -11 301 1 197 349 0 16 chr3_random 2750282 2750345 -5677936 - MIR SINE MIR -164 98 37 2219 120 0 0 chr3_random 2751093 2751394 -5676887 + AluSg SINE Alu 1 301 -9 24636 102 7 13 chr3_random 2751419 2755014 -5673267 + L1P LINE L1 11 3584 -2562 297 0 0 0 chr3_random 2756224 2756257 -5672024 + (CA)n Simple_repeat Simple_repeat 2 34 0 520 330 88 14 chr3_random 2756536 2756751 -5671530 + MLT1J LTR MaLR 64 294 -217 911 136 7 7 chr3_random 2757500 2757655 -5670626 + AluSp/q SINE Alu 159 313 0 787 314 47 54 chr3_random 2757865 2758406 -5669875 + L2 LINE L2 2778 3313 0 27 29 0 0 chr3_random 2758963 2758997 -5669284 + AT_rich Low_complexity Low_complexity 1 34 0 332 295 238 5 chr3_random 2759709 2759919 -5668362 - MIR SINE MIR 0 262 4 197 370 29 7 chr3_random 2760276 2760414 -5667867 + MIR SINE MIR 88 228 -34 1187 281 119 8 chr3_random 2762766 2763243 -5665038 + L2 LINE L2 1141 1670 -1644 696 217 1 40 chr3_random 2763243 2763445 -5664836 + L1MD2 LINE L1 5734 5928 -243 22 80 0 0 chr3_random 2763950 2764000 -5664281 + AT_rich Low_complexity Low_complexity 1 50 0 211 294 59 15 chr3_random 2765637 2765705 -5662576 + L2 LINE L2 3150 3220 -52 363 316 142 18 chr3_random 2765979 2766204 -5662077 + MLT1I LTR MaLR 101 353 -56 328 273 119 21 chr3_random 2766339 2766482 -5661799 - L1ME4a LINE L1 -2 6119 5963 26 0 0 0 chr3_random 2766537 2766563 -5661718 + AT_rich Low_complexity Low_complexity 1 26 0 378 61 0 0 chr3_random 2767290 2767339 -5660942 + (CA)n Simple_repeat Simple_repeat 2 50 0 256 171 40 26 chr3_random 2767753 2767829 -5660452 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 1884 144 73 14 chr3_random 2767852 2768206 -5660075 - THE1C LTR MaLR 0 375 1 1735 233 53 30 chr3_random 2768223 2768666 -5659615 - MLT2B2 LTR ERVL -44 459 15 217 357 179 0 chr3_random 2768699 2768811 -5659470 + MIR SINE MIR 44 175 -87 25 51 0 0 chr3_random 2770095 2770134 -5658147 + AT_rich Low_complexity Low_complexity 1 39 0 2460 37 17 3 chr3_random 2770870 2771165 -5657116 + AluY SINE Alu 1 299 -12 1276 193 10 109 chr3_random 2771447 2771852 -5656429 + MLT1A1 LTR MaLR 1 365 0 645 309 50 5 chr3_random 2772610 2772811 -5655470 + MIR SINE MIR 9 218 -44 409 342 31 31 chr3_random 2773677 2773905 -5654376 + MIR SINE MIR 9 236 -26 393 143 0 0 chr3_random 2773945 2774008 -5654273 + MLT1A1-int LTR MaLR 1671 1733 -2 1412 186 41 32 chr3_random 2774027 2774371 -5653910 + MLT1A1 LTR MaLR 19 365 0 21 36 0 0 chr3_random 2774445 2774473 -5653808 + AT_rich Low_complexity Low_complexity 1 28 0 256 393 34 22 chr3_random 2774528 2774706 -5653575 + L2 LINE L2 2608 2787 -527 578 172 81 126 chr3_random 2774951 2775093 -5653188 + MLT1A1 LTR MaLR 1 148 -217 2027 112 3 7 chr3_random 2775093 2775379 -5652902 + AluSg SINE Alu 1 285 -25 464 0 18 0 chr3_random 2775382 2775438 -5652843 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 578 172 81 126 chr3_random 2775438 2775489 -5652792 + MLT1A1 LTR MaLR 150 189 -176 302 93 0 0 chr3_random 2775491 2775534 -5652747 + MLT1A1 LTR MaLR 340 382 -14 323 89 0 0 chr3_random 2775618 2775663 -5652618 + U5 snRNA snRNA 1 45 -71 340 248 67 54 chr3_random 2775877 2776026 -5652255 - MIR SINE MIR -25 237 87 23 0 0 0 chr3_random 2776251 2776274 -5652007 + AT_rich Low_complexity Low_complexity 1 23 0 303 175 0 0 chr3_random 2776825 2776882 -5651399 + (TG)n Simple_repeat Simple_repeat 2 58 0 321 266 126 80 chr3_random 2778717 2778916 -5649365 + Charlie8 DNA MER1_type 28 235 -2182 708 161 0 0 chr3_random 2779117 2779241 -5649040 - L1MA3 LINE L1 -2 6303 6180 2782 10 0 0 chr3_random 2779454 2779756 -5648525 - AluYa5 SINE Alu -9 302 1 1149 334 48 43 chr3_random 2780364 2781221 -5647060 - L3 LINE CR1 -31 1546 686 771 166 60 7 chr3_random 2781428 2781579 -5646702 + L1MA5A LINE L1 6073 6231 -66 558 119 0 0 chr3_random 2781579 2781663 -5646618 + AluSg/x SINE Alu 218 301 -8 323 310 5 27 chr3_random 2781664 2781851 -5646430 + L1M1 LINE L1 2989 3171 -4394 519 207 88 60 chr3_random 2781871 2782088 -5646193 + L1ME LINE L1 4623 4845 -1301 414 167 14 0 chr3_random 2782099 2782171 -5646110 - FLAM SINE Alu -17 126 54 1558 249 62 7 chr3_random 2782203 2783031 -5645250 + L1ME LINE L1 4857 5731 -435 840 335 37 6 chr3_random 2783031 2783386 -5644895 + L1PA12 LINE L1 2 367 -7214 4163 210 27 36 chr3_random 2784051 2785422 -5642859 + L1PA12 LINE L1 2182 3558 -4026 2409 160 53 94 chr3_random 2785570 2785750 -5642531 + L1MC1 LINE L1 5254 5440 -893 2098 104 3 7 chr3_random 2785750 2786038 -5642243 - AluSx SINE Alu -24 288 2 2409 160 53 94 chr3_random 2786038 2786594 -5641687 + L1MC1 LINE L1 5440 5960 -373 5421 208 71 5 chr3_random 2786878 2788876 -5639405 - L1PBa LINE L1 -4479 2384 6 23 92 0 0 chr3_random 2789027 2789092 -5639189 + AT_rich Low_complexity Low_complexity 1 65 0 249 354 28 11 chr3_random 2789214 2789392 -5638889 - L1M4 LINE L1 -3316 2830 2650 545 231 107 71 chr3_random 2789778 2789833 -5638448 - MLT1H LTR MaLR -244 305 253 2891 16 0 0 chr3_random 2789833 2790150 -5638131 + AluYb8 SINE Alu 1 317 -1 545 231 107 71 chr3_random 2790150 2790319 -5637962 - MLT1H LTR MaLR -296 253 73 2591 187 121 2 chr3_random 2790371 2790910 -5637371 + LTR26 LTR ERV1 1 603 0 23 0 0 0 chr3_random 2791003 2791026 -5637255 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3_random 2791226 2791254 -5637027 + AT_rich Low_complexity Low_complexity 1 28 0 343 347 83 29 chr3_random 2791529 2791771 -5636510 + MIR SINE MIR 8 262 0 6880 65 26 8 chr3_random 2791865 2792746 -5635535 + MER11D LTR ERVK 1 897 0 6784 69 0 0 chr3_random 2792746 2793606 -5634675 + HERVK11D LTR ERVK 1 860 -6892 * 14587 37 1 1 chr3_random 2793601 2795340 -5632941 + HERVK11D LTR ERVK 3066 4804 -2948 4398 58 11 2 chr3_random 2795330 2795880 -5632401 + HERVK11D LTR ERVK 5368 5922 -1830 * 2199 122 3 0 chr3_random 2795880 2796233 -5632048 - L1P LINE L1 -2661 3800 3447 6637 133 15 7 chr3_random 2796235 2797246 -5631035 + THE1A-int LTR MaLR 560 1578 -2 2264 138 6 8 chr3_random 2797248 2797604 -5630677 + THE1A LTR MaLR 1 355 0 3570 198 6 37 chr3_random 2797606 2799410 -5628871 - L1P3 LINE L1 -4454 2007 80 1315 193 75 98 chr3_random 2799411 2799799 -5628482 + MLT2B1 LTR ERVL 142 520 0 24 32 0 0 chr3_random 2800364 2800395 -5627886 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr3_random 2800593 2800623 -5627658 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3_random 2800842 2800871 -5627410 + AT_rich Low_complexity Low_complexity 1 29 0 1049 314 54 11 chr3_random 2801637 2802009 -5626272 + MER74A LTR ERVL 120 507 -51 1939 200 115 28 chr3_random 2802538 2803020 -5625261 - Charlie1 DNA MER1_type 0 2761 2214 705 226 44 13 chr3_random 2803020 2803179 -5625102 + FRAM SINE Alu 2 165 -1 1939 200 115 28 chr3_random 2803179 2803305 -5624976 - Charlie1 DNA MER1_type -547 2214 2100 1677 192 119 28 chr3_random 2804440 2804868 -5623413 + MLT1C LTR MaLR 1 467 0 1857 226 11 44 chr3_random 2805402 2805924 -5622357 + MLT1D LTR MaLR 1 505 0 1975 152 52 64 chr3_random 2807042 2807339 -5620942 - L1MB3 LINE L1 -57 6126 5827 2222 128 0 0 chr3_random 2807339 2807651 -5620630 - AluSx SINE Alu 0 312 1 1975 152 52 64 chr3_random 2807651 2807689 -5620592 - L1MB3 LINE L1 -356 5827 5790 300 111 0 0 chr3_random 2807689 2807734 -5620547 + (CA)n Simple_repeat Simple_repeat 2 46 0 1975 152 52 64 chr3_random 2807734 2807878 -5620403 - L1MB3 LINE L1 -393 5790 5652 231 208 31 46 chr3_random 2808353 2808483 -5619798 + (TATAA)n Simple_repeat Simple_repeat 3 130 0 782 179 7 0 chr3_random 2810001 2810141 -5618140 - FLAM_C SINE Alu 0 143 3 331 213 120 48 chr3_random 2810904 2811091 -5617190 + MER34 LTR ERV1 434 537 -5 185 328 0 16 chr3_random 2811201 2811265 -5617016 - MIR SINE MIR -50 212 150 38 61 0 0 chr3_random 2811265 2811331 -5616950 + AT_rich Low_complexity Low_complexity 1 66 0 1734 147 3 27 chr3_random 2811519 2811873 -5616408 - MER4A LTR ERV1 0 664 261 306 139 361 0 chr3_random 2811873 2811945 -5616336 - MER4A LTR ERV1 -566 98 1 457 291 55 31 chr3_random 2811995 2812249 -5616032 - MIR SINE MIR -1 261 2 181 219 31 78 chr3_random 2812779 2812843 -5615438 + L3 LINE CR1 1239 1299 -278 202 322 46 35 chr3_random 2812973 2813060 -5615221 + L2 LINE L2 3175 3262 -51 290 378 62 35 chr3_random 2813899 2814113 -5614168 + L2 LINE L2 1941 2148 -1166 2065 206 34 0 chr3_random 2814113 2814531 -5613750 + MSTB1 LTR MaLR 1 432 0 290 378 62 35 chr3_random 2814531 2814750 -5613531 + L2 LINE L2 2148 2386 -928 23 97 0 0 chr3_random 2815562 2815634 -5612647 + AT_rich Low_complexity Low_complexity 1 72 0 734 232 54 5 chr3_random 2815892 2816077 -5612204 + L1M4 LINE L1 4046 4239 -1907 2129 122 7 3 chr3_random 2816198 2816502 -5611779 + AluSx SINE Alu 1 305 -7 187 192 27 0 chr3_random 2816502 2816575 -5611706 + (TA)n Simple_repeat Simple_repeat 1 75 0 303 121 76 15 chr3_random 2816583 2816649 -5611632 - L1MCa LINE L1 -4362 2064 1995 189 89 67 0 chr3_random 2816652 2816697 -5611584 + (TA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr3_random 2816746 2816767 -5611514 + AT_rich Low_complexity Low_complexity 1 21 0 2109 113 3 10 chr3_random 2819513 2819814 -5608467 + AluSx SINE Alu 5 303 -9 8437 191 26 29 chr3_random 2820449 2821833 -5606448 + L1PA10 LINE L1 10 1397 -5086 2379 65 0 26 chr3_random 2821833 2822143 -5606138 + AluY SINE Alu 1 302 -9 8437 191 26 29 chr3_random 2822143 2824033 -5604248 + L1PA10 LINE L1 1397 3292 -3191 2421 97 8 25 chr3_random 2824033 2824393 -5603888 + THE1A LTR MaLR 2 355 0 8437 191 26 29 chr3_random 2824393 2827380 -5600901 + L1PA10 LINE L1 3292 6480 -3 308 280 11 11 chr3_random 2827633 2827760 -5600521 + GA-rich Low_complexity Low_complexity 1 127 0 333 306 205 4 chr3_random 2827954 2828183 -5600098 + L1MC/D LINE L1 5496 5770 -2038 810 238 0 0 chr3_random 2828239 2828428 -5599853 - L1 LINE L1 -1249 4897 4709 33 73 0 0 chr3_random 2828678 2828746 -5599535 + AT_rich Low_complexity Low_complexity 1 68 0 2241 98 0 0 chr3_random 2828765 2829052 -5599229 - AluY SINE Alu -15 296 10 297 0 0 0 chr3_random 2829177 2829210 -5599071 + (TG)n Simple_repeat Simple_repeat 2 34 0 898 218 12 0 chr3_random 2829483 2829653 -5598628 + MSTD LTR MaLR 1 172 -224 5210 166 16 25 chr3_random 2829657 2831189 -5597092 + L1PB3 LINE L1 4624 6152 -2 25 0 0 0 chr3_random 2831201 2831226 -5597055 + AT_rich Low_complexity Low_complexity 1 25 0 856 233 47 22 chr3_random 2831302 2831327 -5596954 + MSTD LTR MaLR 185 208 -188 195 42 0 0 chr3_random 2831327 2831351 -5596930 + (TC)n Simple_repeat Simple_repeat 1 24 0 856 233 47 22 chr3_random 2831351 2831572 -5596709 + MSTD LTR MaLR 208 396 0 8813 177 20 21 chr3_random 2831936 2834704 -5593577 + L1MA4A LINE L1 3527 6294 -9 253 366 34 99 chr3_random 2834714 2835129 -5593152 + L2 LINE L2 2879 3266 -6 2071 173 0 24 chr3_random 2835305 2835675 -5592606 - MLT1A1 LTR MaLR -4 361 1 2014 144 3 0 chr3_random 2836676 2836974 -5591307 - AluSq SINE Alu -14 299 1 231 395 18 9 chr3_random 2837212 2837321 -5590960 - L2 LINE L2 -5 3308 3199 590 211 10 27 chr3_random 2837324 2837501 -5590780 - L1MB8 LINE L1 -255 5923 5770 311 333 24 24 chr3_random 2837503 2837668 -5590613 - ERVL LTR ERVL -815 4949 4785 493 141 0 0 chr3_random 2837693 2837778 -5590503 - L1PA13 LINE L1 -3 6160 6076 1220 350 93 29 chr3_random 2837922 2839155 -5589126 - ERVL LTR ERVL -1115 4649 3338 394 318 87 16 chr3_random 2839177 2839419 -5588862 - LTR16A1 LTR ERVL -31 426 168 226 345 0 0 chr3_random 2839732 2839819 -5588462 - LTR16A1 LTR ERVL -60 397 311 264 59 0 0 chr3_random 2840095 2840129 -5588152 + (A)n Simple_repeat Simple_repeat 1 34 0 333 0 0 0 chr3_random 2840720 2840757 -5587524 + (TG)n Simple_repeat Simple_repeat 1 37 0 322 292 109 64 chr3_random 2842105 2842313 -5585968 - HAL1b LINE L1 -1 1347 1150 2258 71 0 0 chr3_random 2842313 2842593 -5585688 + AluY SINE Alu 1 280 -31 921 62 0 0 chr3_random 2842480 2842595 -5585686 + AluY SINE Alu 168 312 0 222 0 0 33 chr3_random 2842595 2842625 -5585656 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 322 292 109 64 chr3_random 2842625 2842790 -5585491 - HAL1b LINE L1 -198 1150 954 292 341 0 11 chr3_random 2842919 2843010 -5585271 + L2 LINE L2 3223 3312 -1 387 288 62 14 chr3_random 2843276 2843488 -5584793 + L1MCa LINE L1 33 204 -5841 763 250 110 21 chr3_random 2843508 2844040 -5584241 + L1MCa LINE L1 1596 2369 -4376 * 3952 209 39 33 chr3_random 2844037 2844089 -5584192 + L1MC3 LINE L1 6753 6803 -982 1866 170 27 3 chr3_random 2844089 2844425 -5583856 - MER2 DNA MER2_type 0 344 1 3952 209 39 33 chr3_random 2844425 2845393 -5582888 + L1MC3 LINE L1 6803 7779 -6 29 28 0 0 chr3_random 2845690 2845726 -5582555 + AT_rich Low_complexity Low_complexity 1 36 0 27 100 0 0 chr3_random 2845761 2845851 -5582430 + AT_rich Low_complexity Low_complexity 1 90 0 318 228 81 13 chr3_random 2845969 2846118 -5582163 - L1M4 LINE L1 -866 5280 5122 226 224 70 6 chr3_random 2846693 2846849 -5581432 + (TA)n Simple_repeat Simple_repeat 2 167 0 267 267 11 44 chr3_random 2846911 2847001 -5581280 - L2 LINE L2 0 3313 3227 350 307 116 22 chr3_random 2847011 2847236 -5581045 - L1M4 LINE L1 -2327 3819 3574 1486 207 52 97 chr3_random 2848102 2848500 -5579781 - MLT1C LTR MaLR 0 467 93 2268 113 0 0 chr3_random 2848500 2848809 -5579472 - AluY SINE Alu -2 309 1 1486 207 52 97 chr3_random 2848809 2848894 -5579387 - MLT1C LTR MaLR -374 93 6 34 79 0 0 chr3_random 2849594 2849670 -5578611 + AT_rich Low_complexity Low_complexity 1 76 0 551 149 0 0 chr3_random 2849721 2849815 -5578466 - L1MB2 LINE L1 -9 6162 6069 2295 98 0 3 chr3_random 2849924 2850221 -5578060 + AluSc SINE Alu 1 296 -13 1672 141 4 22 chr3_random 2850606 2850913 -5577368 - AluJb SINE Alu 0 312 21 303 368 96 17 chr3_random 2850994 2851233 -5577048 - L3 LINE CR1 -304 1273 1016 1931 145 3 3 chr3_random 2851405 2851708 -5576573 + L1PB3 LINE L1 5845 6147 -7 24 0 0 0 chr3_random 2851909 2851933 -5576348 + AT_rich Low_complexity Low_complexity 1 24 0 276 154 0 0 chr3_random 2852002 2852054 -5576227 + (CA)n Simple_repeat Simple_repeat 2 53 0 233 318 0 24 chr3_random 2852877 2852962 -5575319 + MIR SINE MIR 58 140 -122 245 286 48 0 chr3_random 2854233 2854296 -5573985 + MER102b DNA MER1_type 1 66 -275 323 280 67 53 chr3_random 2854392 2854542 -5573739 + MER102b DNA MER1_type 188 339 -2 373 366 22 0 chr3_random 2856089 2856223 -5572058 + L2 LINE L2 31 167 -3147 229 278 105 53 chr3_random 2856244 2856377 -5571904 + MER5A DNA MER1_type 2 141 -48 597 278 43 0 chr3_random 2856383 2856545 -5571736 + L2 LINE L2 186 354 -2960 1870 256 24 8 chr3_random 2856801 2857312 -5570969 - L1MB8 LINE L1 -9 6169 5651 292 58 39 39 chr3_random 2857649 2857701 -5570580 - L1PA10 LINE L1 0 6174 6122 25 0 0 0 chr3_random 2858808 2858833 -5569448 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr3_random 2860118 2860143 -5568138 + (T)n Simple_repeat Simple_repeat 1 25 0 597 293 90 71 chr3_random 2860369 2860892 -5567389 - LTR67 LTR ERVL -9 548 16 1100 299 79 6 chr3_random 2861745 2862227 -5566054 + L1ME3A LINE L1 5652 6168 -2 295 356 23 15 chr3_random 2862794 2862926 -5565355 + L2 LINE L2 3181 3313 0 2165 247 45 52 chr3_random 2862942 2863772 -5564509 - MER99 DNA DNA -1 827 4 24 32 0 0 chr3_random 2863816 2863847 -5564434 + AT_rich Low_complexity Low_complexity 1 31 0 2599 185 105 5 chr3_random 2864248 2864810 -5563471 - MER73 LTR ERVL -3 641 24 183 80 0 0 chr3_random 2865092 2865117 -5563164 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 910 328 113 26 chr3_random 2865209 2865776 -5562505 - L2 LINE L2 -380 2934 2319 201 263 0 50 chr3_random 2866133 2866213 -5562068 + T-rich Low_complexity Low_complexity 1 76 0 41 36 0 0 chr3_random 2866408 2866463 -5561818 + AT_rich Low_complexity Low_complexity 1 55 0 31 0 0 0 chr3_random 2866657 2866688 -5561593 + AT_rich Low_complexity Low_complexity 1 31 0 282 245 64 32 chr3_random 2868285 2868379 -5559902 + MLT1J2 LTR MaLR 115 211 -239 498 277 61 53 chr3_random 2869882 2870226 -5558055 + MLT1J2 LTR MaLR 37 377 -32 318 26 0 0 chr3_random 2870256 2870295 -5557986 + (GA)n Simple_repeat Simple_repeat 2 40 0 2200 128 45 11 chr3_random 2870901 2871253 -5557028 + THE1B LTR MaLR 1 364 0 254 301 0 41 chr3_random 2871443 2871516 -5556765 + L2 LINE L2 3244 3313 0 1983 129 44 30 chr3_random 2872467 2872832 -5555449 + THE1C LTR MaLR 4 373 -2 1588 157 17 40 chr3_random 2873831 2874131 -5554150 + AluJo SINE Alu 1 293 -19 24 0 0 0 chr3_random 2874308 2874332 -5553949 + AT_rich Low_complexity Low_complexity 1 24 0 2734 96 74 12 chr3_random 2874405 2874822 -5553459 - MLT2A1 LTR ERVL -1 443 1 20377 91 4 2 chr3_random 2874822 2877512 -5550769 - HERVL-A1 LTR ERVL 0 5654 2961 507 265 39 51 chr3_random 2878779 2879013 -5549268 - MLT1A2 LTR MaLR -11 363 133 460 196 0 49 chr3_random 2879068 2879170 -5549111 - MLT1A2 LTR MaLR -196 169 73 224 278 67 122 chr3_random 2879331 2879669 -5548612 - L2 LINE L2 -535 2779 2467 2318 92 0 10 chr3_random 2879669 2879973 -5548308 + AluSg1 SINE Alu 1 301 -8 224 278 67 122 chr3_random 2879973 2880051 -5548230 - L2 LINE L2 -847 2467 2386 269 257 29 0 chr3_random 2880054 2880124 -5548157 + LTR50 LTR ERVL 96 167 -628 307 333 99 47 chr3_random 2880140 2880542 -5547739 - L2 LINE L2 -980 2334 1912 282 318 116 30 chr3_random 2881106 2881339 -5546942 + L3 LINE CR1 1078 1330 -247 673 287 38 10 chr3_random 2881769 2881978 -5546303 + MLT1I LTR MaLR 1 215 -194 280 176 27 54 chr3_random 2883447 2883521 -5544760 + LTR33A LTR ERVL 452 523 0 191 315 102 28 chr3_random 2883910 2884018 -5544263 + L3 LINE CR1 1414 1529 -48 1987 124 3 0 chr3_random 2884573 2884863 -5543418 + AluSp SINE Alu 1 291 -22 225 132 0 0 chr3_random 2884863 2884901 -5543380 + (TA)n Simple_repeat Simple_repeat 1 38 0 262 171 0 0 chr3_random 2885459 2885500 -5542781 - MLT2D LTR ERVL 0 464 424 270 56 0 0 chr3_random 2885500 2885536 -5542745 + (TG)n Simple_repeat Simple_repeat 1 36 0 2136 180 13 5 chr3_random 2885720 2886115 -5542166 - MLT2D LTR ERVL -14 400 3 240 360 124 7 chr3_random 2886465 2886618 -5541663 - L2 LINE L2 0 3272 3102 1346 167 6 0 chr3_random 2886719 2887039 -5541242 - L1P LINE L1 -741 5425 5104 4006 160 23 15 chr3_random 2887039 2887782 -5540499 + L1PA16 LINE L1 5414 6163 -3 499 293 186 0 chr3_random 2887786 2887974 -5540307 - L2 LINE L2 -256 3057 2835 2549 58 0 0 chr3_random 2888008 2888319 -5539962 + AluY SINE Alu 1 311 0 22 0 0 0 chr3_random 2889545 2889567 -5538714 + AT_rich Low_complexity Low_complexity 1 22 0 437 287 35 7 chr3_random 2889627 2889770 -5538511 + MER58C DNA MER1_type 1 147 -68 1854 155 26 68 chr3_random 2889770 2890151 -5538130 + MSTC LTR MaLR 1 365 -63 32024 34 13 1 chr3_random 2890156 2896183 -5532098 + L1PA2 LINE L1 2 6155 0 377 137 68 0 chr3_random 2896189 2896262 -5532019 + MSTC LTR MaLR 351 428 0 298 180 0 16 chr3_random 2896263 2896324 -5531957 + MER58 DNA MER1_type 2359 2418 -2 1168 161 0 19 chr3_random 2897226 2897437 -5530844 + AluJo SINE Alu 87 293 -19 227 281 52 0 chr3_random 2897448 2897544 -5530737 + MIR SINE MIR 136 236 -26 234 220 0 0 chr3_random 2897881 2897940 -5530341 + T-rich Low_complexity Low_complexity 1 59 0 935 103 0 0 chr3_random 2898105 2898231 -5530050 - AluSq/x SINE Alu -186 126 1 2062 174 60 19 chr3_random 2899073 2899505 -5528776 + L1MC2 LINE L1 5886 6335 -9 32 57 0 0 chr3_random 2900627 2900680 -5527601 + AT_rich Low_complexity Low_complexity 1 53 0 346 366 137 27 chr3_random 2901184 2901586 -5526695 - LTR16A LTR ERVL -4 446 1 436 306 89 0 chr3_random 2902198 2902324 -5525957 - HERV16 LTR ERVL -3916 1080 936 204 40 0 0 chr3_random 2902324 2902349 -5525932 + (TG)n Simple_repeat Simple_repeat 2 26 0 436 306 89 0 chr3_random 2902349 2902379 -5525902 - HERV16 LTR ERVL -4060 936 910 928 329 71 34 chr3_random 2902482 2903103 -5525178 - HERV16 LTR ERVL -4232 764 121 1517 245 60 18 chr3_random 2903337 2903720 -5524561 - MLT1D LTR MaLR 0 505 107 1703 266 50 24 chr3_random 2904991 2905495 -5522786 + LTR40a LTR ERVL 1 517 -2 1603 194 102 8 chr3_random 2905705 2906341 -5521940 - LTR48 LTR ERV1 -55 732 3 22 0 0 0 chr3_random 2906523 2906545 -5521736 + AT_rich Low_complexity Low_complexity 1 22 0 9186 177 11 12 chr3_random 2906572 2908320 -5519961 - L1PB1 LINE L1 -2 6865 5119 666 0 0 0 chr3_random 2908320 2908394 -5519887 + (TATTG)n Simple_repeat Simple_repeat 2 75 0 9186 177 11 12 chr3_random 2908394 2909398 -5518883 - L1PB1 LINE L1 -1748 5119 4116 8057 178 81 6 chr3_random 2909397 2911723 -5516558 - L1PB1 LINE L1 -4112 2751 105 * 240 237 17 0 chr3_random 2911731 2911790 -5516491 - MER5B DNA MER1_type -118 60 1 717 290 0 5 chr3_random 2911868 2912068 -5516213 - MER3 DNA MER1_type -10 199 1 336 48 0 0 chr3_random 2912226 2912268 -5516013 + (GA)n Simple_repeat Simple_repeat 1 42 0 7376 195 91 96 chr3_random 2913387 2914200 -5514081 + L1MC1 LINE L1 26 842 -5584 870 143 20 14 chr3_random 2914200 2914347 -5513934 + FRAM SINE Alu 8 155 -21 7376 195 91 96 chr3_random 2914347 2916137 -5512144 + L1MC1 LINE L1 842 2756 -3670 281 223 38 83 chr3_random 2916140 2916297 -5511984 + L1MC1 LINE L1 3063 3212 -3214 5439 197 42 8 chr3_random 2916304 2917872 -5510409 + L1MC1 LINE L1 4998 6612 -1 27 49 0 0 chr3_random 2918106 2918147 -5510134 + AT_rich Low_complexity Low_complexity 1 41 0 8528 123 19 1 chr3_random 2918272 2919535 -5508746 + HSMAR1 DNA Mariner 2 1287 0 1770 249 11 3 chr3_random 2921729 2922107 -5506174 - MER70A LTR ERVL -2 470 90 758 231 19 0 chr3_random 2922106 2922262 -5506019 - MER70B LTR ERVL -419 159 1 * 393 263 17 25 chr3_random 2923111 2923229 -5505052 + MLT1J1 LTR MaLR 6 122 -324 2286 95 3 0 chr3_random 2926638 2926932 -5501349 + AluSp SINE Alu 1 295 -18 24 0 0 0 chr3_random 2927192 2927216 -5501065 + AT_rich Low_complexity Low_complexity 1 24 0 701 168 0 38 chr3_random 2927486 2927617 -5500664 + FLAM_C SINE Alu 1 126 -7 1098 200 38 17 chr3_random 2927901 2928141 -5500140 - MLT1A1 LTR MaLR -117 248 4 369 272 22 0 chr3_random 2928354 2928446 -5499835 - MLT2E LTR ERVL -514 114 21 279 294 35 0 chr3_random 2929061 2929146 -5499135 + L2 LINE L2 3217 3304 -9 269 299 198 18 chr3_random 2930374 2930591 -5497690 - L3 LINE CR1 -79 1498 1243 468 275 34 27 chr3_random 2930630 2930779 -5497502 - L2 LINE L2 -1 3271 3122 191 327 27 27 chr3_random 2930788 2930898 -5497383 - L3 LINE CR1 -399 1178 1069 427 322 41 6 chr3_random 2930909 2931080 -5497201 + MIR SINE MIR 86 262 0 190 336 248 9 chr3_random 2931118 2931445 -5496836 - L3 LINE CR1 -575 1002 598 189 0 0 0 chr3_random 2932621 2932642 -5495639 + (T)n Simple_repeat Simple_repeat 1 21 0 258 345 35 18 chr3_random 2932771 2932884 -5495397 + L2 LINE L2 2532 2646 -668 210 319 0 77 chr3_random 2933339 2933430 -5494851 + MIR3 SINE MIR 119 202 -6 22 0 0 0 chr3_random 2933532 2933554 -5494727 + AT_rich Low_complexity Low_complexity 1 22 0 1136 312 113 9 chr3_random 2935869 2936311 -5491970 - L2 LINE L2 -1 3312 2825 2784 187 82 24 chr3_random 2936959 2937547 -5490734 + LTR26E LTR ERV1 1 622 0 3339 41 0 7 chr3_random 2937654 2938067 -5490214 + L1PA5 LINE L1 5743 6152 -2 293 353 74 68 chr3_random 2938100 2938465 -5489816 - L2 LINE L2 -76 3196 2830 25 31 0 0 chr3_random 2938529 2938561 -5489720 + AT_rich Low_complexity Low_complexity 1 32 0 2194 152 58 27 chr3_random 2938591 2939038 -5489243 + MLT1C LTR MaLR 1 461 -6 268 288 68 41 chr3_random 2939040 2939186 -5489095 + L3 LINE CR1 740 889 -688 28 61 0 0 chr3_random 2939282 2939331 -5488950 + AT_rich Low_complexity Low_complexity 1 49 0 7475 27 11 0 chr3_random 2939650 2940670 -5487611 + L1PA3 LINE L1 5123 6152 -3 318 110 0 137 chr3_random 2940607 2940680 -5487601 + L1PA10 LINE L1 6106 6168 0 29 28 0 0 chr3_random 2940747 2940783 -5487498 + AT_rich Low_complexity Low_complexity 1 36 0 1745 272 33 45 chr3_random 2940948 2941480 -5486801 - L1MEc LINE L1 -3049 3166 2644 1934 146 21 0 chr3_random 2941480 2941768 -5486513 + AluSx SINE Alu 1 294 -18 1745 272 33 45 chr3_random 2941768 2942022 -5486259 - L1MEc LINE L1 -3571 2644 2389 3757 168 52 4 chr3_random 2942022 2942701 -5485580 - MER50 LTR ERV1 -23 711 1 26 0 0 0 chr3_random 2942777 2942803 -5485478 + AT_rich Low_complexity Low_complexity 1 26 0 722 221 41 16 chr3_random 2942835 2943079 -5485202 - L1MEc LINE L1 -4027 2369 2120 369 234 78 0 chr3_random 2943140 2943217 -5485064 - MER5A DNA MER1_type -5 184 102 1591 164 63 3 chr3_random 2943217 2943504 -5484777 + AluJb SINE Alu 1 304 -8 184 262 64 99 chr3_random 2943504 2943579 -5484702 + MER5A DNA MER1_type 99 168 -21 25 75 0 0 chr3_random 2943611 2943664 -5484617 + AT_rich Low_complexity Low_complexity 1 53 0 1501 195 3 32 chr3_random 2943788 2944096 -5484185 - AluJo SINE Alu -13 299 1 13396 151 27 23 chr3_random 2944277 2946683 -5481598 - Tigger1 DNA MER2_type 0 2418 2 259 143 0 0 chr3_random 2947074 2947116 -5481165 - MLT2D LTR ERVL -6 514 473 195 204 0 0 chr3_random 2947127 2947171 -5481110 + (TA)n Simple_repeat Simple_repeat 1 44 0 658 265 47 33 chr3_random 2947187 2947542 -5480739 - MLT2D LTR ERVL -19 445 83 792 322 50 55 chr3_random 2947830 2948234 -5480047 + LTR16A LTR ERVL 22 423 -27 22 35 0 0 chr3_random 2949478 2949507 -5478774 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr3_random 2949636 2949662 -5478619 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr3_random 2951743 2951774 -5476507 + AT_rich Low_complexity Low_complexity 1 31 0 2295 249 68 39 chr3_random 2952435 2953325 -5474956 - L1ME3A LINE L1 -26 6144 5236 221 192 0 19 chr3_random 2953325 2953377 -5474904 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 3109 166 77 25 chr3_random 2953571 2953718 -5474563 + L1MA6 LINE L1 5616 5754 -546 246 32 0 0 chr3_random 2953718 2953749 -5474532 + (CA)n Simple_repeat Simple_repeat 2 32 0 3109 166 77 25 chr3_random 2953749 2954251 -5474030 + L1MA6 LINE L1 5754 6299 -1 234 286 65 0 chr3_random 2954307 2954384 -5473897 - L1ME3A LINE L1 -1165 4981 4900 22 103 0 0 chr3_random 2954515 2954593 -5473688 + AT_rich Low_complexity Low_complexity 1 78 0 592 270 99 73 chr3_random 2954642 2955151 -5473130 - LTR50 LTR ERVL -15 508 1 23 0 0 0 chr3_random 2955447 2955470 -5472811 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3_random 2955850 2955885 -5472396 + AT_rich Low_complexity Low_complexity 1 35 0 211 134 81 13 chr3_random 3006830 3006979 -5421302 + (TA)n Simple_repeat Simple_repeat 2 160 0 30 45 0 0 chr3_random 3006979 3007023 -5421258 + AT_rich Low_complexity Low_complexity 1 44 0 350 147 16 43 chr3_random 3007029 3007213 -5421068 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 204 93 37 19 chr3_random 3007235 3007289 -5420992 + (TATAA)n Simple_repeat Simple_repeat 2 56 0 29 84 0 0 chr3_random 3007616 3007687 -5420594 + AT_rich Low_complexity Low_complexity 1 71 0 270 262 0 12 chr3_random 3008159 3008243 -5420038 - HAL1 LINE L1 -868 1639 1557 1206 193 26 0 chr3_random 3008288 3008552 -5419729 - L1MA8 LINE L1 -15 6276 6006 364 273 45 8 chr3_random 3008706 3008838 -5419443 + MER3 DNA MER1_type 29 165 -44 1082 228 53 8 chr3_random 3008855 3009211 -5419070 + MER3 DNA MER1_type 2246 2617 0 239 214 36 129 chr3_random 3009283 3009423 -5418858 - HAL1 LINE L1 -1159 1348 1222 285 200 22 67 chr3_random 3011586 3011676 -5416605 + MLT1J LTR MaLR 398 483 -28 185 125 42 42 chr3_random 3011676 3011724 -5416557 - MER5B DNA MER1_type -127 51 4 2367 81 0 7 chr3_random 3011926 3012233 -5416048 - AluSg SINE Alu -5 305 1 425 273 186 34 chr3_random 3015600 3015894 -5412387 - L1MEc LINE L1 -5091 1354 1007 24 0 0 0 chr3_random 3015988 3016012 -5412269 + AT_rich Low_complexity Low_complexity 1 24 0 212 171 0 0 chr3_random 3016566 3016601 -5411680 + GA-rich Low_complexity Low_complexity 4 38 0 478 15 45 0 chr3_random 3016942 3017008 -5411273 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 261 0 0 0 chr3_random 3017252 3017281 -5411000 + (TG)n Simple_repeat Simple_repeat 1 29 0 430 319 134 30 chr3_random 3017320 3017746 -5410535 + Charlie8 DNA MER1_type 84 553 -1864 25725 146 17 18 chr3_random 3017895 3024194 -5404087 - L1PA8A LINE L1 0 6446 85 845 123 84 19 chr3_random 3024195 3024349 -5403932 - MLT2A2 LTR ERVL -79 374 211 331 341 11 0 chr3_random 3024487 3024578 -5403703 + LTR67 LTR ERVL 110 201 -356 221 402 28 6 chr3_random 3025029 3025208 -5403073 - L2 LINE L2 -2281 1033 851 1108 151 0 11 chr3_random 3025216 3025395 -5402886 + AluSg/x SINE Alu 129 305 -7 480 247 99 29 chr3_random 3025434 3025677 -5402604 - L1M4c LINE L1 -4434 2129 1870 392 271 213 8 chr3_random 3025788 3026077 -5402204 - L1M4c LINE L1 -4696 1688 1349 320 43 22 0 chr3_random 3026220 3026266 -5402015 + (TG)n Simple_repeat Simple_repeat 2 48 0 972 218 55 106 chr3_random 3026959 3027355 -5400926 + MLT2D LTR ERVL 1 375 -39 387 0 0 0 chr3_random 3027355 3027398 -5400883 + (CA)n Simple_repeat Simple_repeat 2 44 0 972 218 55 106 chr3_random 3027398 3027437 -5400844 + MLT2D LTR ERVL 375 414 0 25 31 0 0 chr3_random 3028405 3028437 -5399844 + AT_rich Low_complexity Low_complexity 1 32 0 206 346 39 0 chr3_random 3028722 3028826 -5399455 - MIR SINE MIR -75 187 80 218 293 40 13 chr3_random 3030385 3030460 -5397821 - MER5B DNA MER1_type -51 127 51 219 310 17 0 chr3_random 3030539 3030597 -5397684 + L2 LINE L2 3207 3265 -48 1953 156 21 0 chr3_random 3030826 3031166 -5397115 + L1PA16 LINE L1 5811 6157 -9 185 342 31 87 chr3_random 3031523 3031845 -5396436 - L2 LINE L2 -160 3112 2809 23 0 0 0 chr3_random 3034151 3034174 -5394107 + AT_rich Low_complexity Low_complexity 1 23 0 555 168 8 15 chr3_random 3034285 3034416 -5393865 + CT-rich Low_complexity Low_complexity 3 132 0 222 37 0 0 chr3_random 3034907 3034934 -5393347 + (TG)n Simple_repeat Simple_repeat 1 27 0 216 158 0 0 chr3_random 3035007 3035045 -5393236 + (TA)n Simple_repeat Simple_repeat 2 39 0 1899 157 0 0 chr3_random 3035100 3035405 -5392876 - AluSq SINE Alu -8 305 1 2125 112 3 10 chr3_random 3036620 3036933 -5391348 - AluSq SINE Alu -2 311 1 863 208 19 11 chr3_random 3037903 3038167 -5390114 - MLT1A1 LTR MaLR -8 357 1 23 0 0 0 chr3_random 3038240 3038263 -5390018 + AT_rich Low_complexity Low_complexity 1 23 0 290 250 65 0 chr3_random 3038273 3038365 -5389916 - MER67C LTR ERV1 -3 707 610 1578 169 67 0 chr3_random 3038370 3038654 -5389627 + MER7A DNA MER2_type 36 336 -10 2895 197 50 5 chr3_random 3038664 3039248 -5389033 - MER67C LTR ERV1 -100 610 1 21 0 0 0 chr3_random 3039404 3039425 -5388856 + AT_rich Low_complexity Low_complexity 1 21 0 263 247 86 0 chr3_random 3039953 3040046 -5388235 - MLT1H LTR MaLR -443 106 6 27 29 0 0 chr3_random 3040465 3040499 -5387782 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3_random 3040851 3040873 -5387408 + AT_rich Low_complexity Low_complexity 1 22 0 3763 209 65 47 chr3_random 3041203 3042887 -5385394 - L1M3 LINE L1 -571 5597 3755 1978 322 101 5 chr3_random 3042894 3043764 -5384517 + L2 LINE L2 1841 2794 -520 237 278 186 0 chr3_random 3043764 3043861 -5384420 - LTR33 LTR ERVL 0 521 407 2196 113 0 6 chr3_random 3043878 3044189 -5384092 + AluSg1 SINE Alu 1 309 0 490 298 44 62 chr3_random 3044211 3044436 -5383845 - LTR16A LTR ERVL -2 448 228 290 390 45 12 chr3_random 3044577 3044823 -5383458 - LTR33 LTR ERVL -236 285 32 486 293 133 4 chr3_random 3044927 3045176 -5383105 - LTR33A LTR ERVL -14 509 229 407 346 55 23 chr3_random 3045421 3045638 -5382643 + MIR SINE MIR 39 262 0 299 256 173 54 chr3_random 3045759 3045927 -5382354 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chr3_random 3046428 3046449 -5381832 + AT_rich Low_complexity Low_complexity 1 21 0 2144 202 24 7 chr3_random 3049044 3049469 -5378812 - MSTB1 LTR MaLR 0 432 1 195 42 0 0 chr3_random 3049841 3049865 -5378416 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 432 287 24 0 chr3_random 3050454 3050621 -5377660 + L1MA7 LINE L1 114 284 -6579 * 6809 145 98 109 chr3_random 3050610 3053719 -5374562 + L1MA7 LINE L1 901 3967 -2895 2740 181 38 54 chr3_random 3053723 3054195 -5374086 + L1MA7 LINE L1 6341 6800 -207 2136 116 0 3 chr3_random 3054195 3054489 -5373792 - AluSq SINE Alu -20 293 1 2740 181 38 54 chr3_random 3054489 3054683 -5373598 + L1MA7 LINE L1 6800 6996 -11 1924 114 6 43 chr3_random 3055224 3055257 -5373024 + L1PA12 LINE L1 5857 5890 -278 1974 183 55 16 chr3_random 3055257 3055694 -5372587 + MSTB2 LTR MaLR 1 454 -3 1924 114 6 43 chr3_random 3055694 3055984 -5372297 + L1PA12 LINE L1 5890 6168 0 2177 139 116 10 chr3_random 3056438 3056825 -5371456 + MSTA LTR MaLR 1 428 0 311 287 0 11 chr3_random 3056825 3056912 -5371369 - L1MC4 LINE L1 -1343 6699 6614 225 280 0 0 chr3_random 3056994 3057044 -5371237 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 22 35 0 0 chr3_random 3058528 3058557 -5369724 + AT_rich Low_complexity Low_complexity 1 29 0 5621 225 47 36 chr3_random 3058887 3060932 -5367349 - L1MC3 LINE L1 -757 5389 4672 6896 63 0 37 chr3_random 3061418 3063098 -5365183 - L1PA5 LINE L1 0 6154 4502 23 54 0 0 chr3_random 3064288 3064325 -5363956 + AT_rich Low_complexity Low_complexity 1 37 0 2280 227 48 58 chr3_random 3065405 3066100 -5362181 + MER76 LTR ERV 1 688 0 199 238 0 0 chr3_random 3066414 3066456 -5361825 - L2 LINE L2 -576 2738 2697 262 288 50 0 chr3_random 3067795 3067875 -5360406 + L2 LINE L2 2933 3016 -256 721 307 40 20 chr3_random 3067995 3068246 -5360035 - MIR SINE MIR 0 262 7 181 384 35 0 chr3_random 3068320 3068406 -5359875 + L2 LINE L2 3184 3272 0 203 244 0 0 chr3_random 3069535 3069580 -5358701 + (TG)n Simple_repeat Simple_repeat 2 46 0 411 328 92 51 chr3_random 3069695 3070226 -5358055 - L2 LINE L2 -561 2753 2201 705 289 9 27 chr3_random 3070751 3070976 -5357305 - LTR16B LTR ERVL -3 461 241 28 29 0 0 chr3_random 3071117 3071152 -5357129 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr3_random 3071519 3071550 -5356731 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1996 117 3 3 chr3_random 3071553 3071843 -5356438 - AluSx SINE Alu -22 290 1 1350 254 30 37 chr3_random 3072585 3072991 -5355290 - MLT1C LTR MaLR -4 463 61 36 23 0 0 chr3_random 3073008 3073051 -5355230 + AT_rich Low_complexity Low_complexity 1 43 0 636 323 96 13 chr3_random 3073480 3073938 -5354343 - LTR33 LTR ERVL -1 520 25 902 253 108 24 chr3_random 3074498 3074794 -5353487 - L3 LINE CR1 -2 1575 1255 994 223 18 0 chr3_random 3075110 3075339 -5352942 + L1PA16 LINE L1 5934 6166 0 1934 247 81 16 chr3_random 3075349 3075518 -5352763 + L1MB7 LINE L1 4212 4369 -1777 6772 65 0 2 chr3_random 3075518 3076858 -5351423 - L1PA7 LINE L1 -2 6152 4807 1934 247 81 16 chr3_random 3076858 3077376 -5350905 + L1MB7 LINE L1 4369 4944 -1202 570 225 44 89 chr3_random 3077362 3077794 -5350487 + L1MB7 LINE L1 5757 6177 -7 * 27 0 0 0 chr3_random 3078616 3078643 -5349638 + AT_rich Low_complexity Low_complexity 1 27 0 31 26 0 0 chr3_random 3078789 3078827 -5349454 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr3_random 3080445 3080468 -5347813 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr3_random 3080570 3080599 -5347682 + (CA)n Simple_repeat Simple_repeat 2 30 0 325 356 58 10 chr3_random 3080730 3080938 -5347343 - L1MEc LINE L1 -5999 397 180 1824 141 61 55 chr3_random 3081056 3081102 -5347179 + MER47A DNA MER2_type 2 46 -2277 1999 134 11 0 chr3_random 3081102 3081385 -5346896 - AluSg SINE Alu -24 286 1 1824 141 61 55 chr3_random 3081385 3081701 -5346580 + MER47A DNA MER2_type 46 366 0 22 70 0 0 chr3_random 3081848 3081891 -5346390 + AT_rich Low_complexity Low_complexity 1 43 0 349 316 137 5 chr3_random 3082152 3082342 -5345939 - MIR SINE MIR -28 234 20 2352 125 22 11 chr3_random 3082801 3083161 -5345120 - THE1B LTR MaLR 0 364 1 294 169 14 42 chr3_random 3083656 3083679 -5344602 - MER46A DNA MER2_type -71 165 145 280 207 0 0 chr3_random 3083679 3083737 -5344544 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 1202 184 14 0 chr3_random 3083750 3083973 -5344308 + Tigger4(Zombi) DNA MER2_type 2506 2731 0 795 241 12 6 chr3_random 3085438 3085604 -5342677 + FAM SINE Alu 1 167 -8 23 0 0 0 chr3_random 3086132 3086155 -5342126 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr3_random 3087266 3087308 -5340973 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr3_random 3088433 3088458 -5339823 + AT_rich Low_complexity Low_complexity 1 25 0 1171 228 81 98 chr3_random 3088604 3089187 -5339094 - MER74B LTR ERVL -10 612 40 316 347 28 14 chr3_random 3089269 3089413 -5338868 - MIR SINE MIR -115 147 2 21 0 0 0 chr3_random 3089707 3089728 -5338553 + AT_rich Low_complexity Low_complexity 1 21 0 418 322 148 14 chr3_random 3090074 3090357 -5337924 - MLT1I LTR MaLR 0 409 89 28 48 0 0 chr3_random 3090466 3090508 -5337773 + AT_rich Low_complexity Low_complexity 1 42 0 446 356 43 11 chr3_random 3090545 3090733 -5337548 + Zaphod DNA AcHobo 167 360 -3671 23853 40 5 2 chr3_random 3090746 3093731 -5334550 - L1PA4 LINE L1 -1227 4919 1926 6815 37 5 54 chr3_random 3093731 3094985 -5333296 + L1PA4 LINE L1 4937 6144 -11 369 0 0 0 chr3_random 3095089 3095130 -5333151 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1449 171 33 25 chr3_random 3095219 3095577 -5332704 + Tigger5 DNA MER2_type 66 2323 0 23 54 0 0 chr3_random 3095606 3095643 -5332638 + AT_rich Low_complexity Low_complexity 1 37 0 704 240 111 22 chr3_random 3095696 3096067 -5332214 + Zaphod DNA AcHobo 3620 4023 -8 649 203 14 0 chr3_random 3096067 3096205 -5332076 + L1 LINE L1 4190 4329 -1817 7108 224 22 21 chr3_random 3097904 3099141 -5329140 - L1 LINE L1 -1817 4329 3094 8847 43 3 1 chr3_random 3099141 3100208 -5328073 + MER11C LTR ERVK 1 1069 -2 7108 224 22 21 chr3_random 3100208 3100377 -5327904 - L1 LINE L1 -3052 3094 2927 2087 118 10 0 chr3_random 3100377 3100666 -5327615 - AluY SINE Alu -19 292 1 7108 224 22 21 chr3_random 3100666 3101134 -5327147 - L1 LINE L1 -3219 2927 2453 5696 156 14 11 chr3_random 3101134 3102098 -5326183 + Tigger1 DNA MER2_type 1383 2349 -69 259 250 14 0 chr3_random 3102125 3102197 -5326084 + L1MC4 LINE L1 6629 6701 -1341 240 239 23 11 chr3_random 3102215 3102303 -5325978 - L1MC4 LINE L1 -1340 6702 6614 246 161 32 81 chr3_random 3102689 3102751 -5325530 - L2 LINE L2 -1274 2040 1982 1878 146 3 32 chr3_random 3103210 3103526 -5324755 - AluSx SINE Alu -5 307 1 38 85 0 0 chr3_random 3103569 3103663 -5324618 + AT_rich Low_complexity Low_complexity 1 94 0 27 29 0 0 chr3_random 3104142 3104176 -5324105 + AT_rich Low_complexity Low_complexity 1 34 0 726 258 16 0 chr3_random 3105174 3105360 -5322921 - MER5A DNA MER1_type 0 189 1 912 295 81 18 chr3_random 3105760 3106218 -5322063 + L1MCb LINE L1 3 489 -5556 2026 230 23 0 chr3_random 3106244 3106714 -5321567 + L1MC3 LINE L1 5483 5963 -1822 402 156 26 13 chr3_random 3106724 3106801 -5321480 - MLT1A1 LTR MaLR -287 78 1 34 24 0 0 chr3_random 3107824 3107865 -5320416 + AT_rich Low_complexity Low_complexity 1 41 0 2256 114 26 0 chr3_random 3107865 3108216 -5320065 - L1PB2 LINE L1 -3 6148 5789 403 173 53 6 chr3_random 3108237 3108580 -5319701 + (TA)n Simple_repeat Simple_repeat 1 359 0 2156 162 65 19 chr3_random 3108727 3109041 -5319240 - L1PA15-16 LINE L1 -4819 2030 1732 235 47 0 47 chr3_random 3109041 3109084 -5319197 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2156 162 65 19 chr3_random 3109084 3109393 -5318888 - L1PA15-16 LINE L1 -5117 1732 1326 4405 64 34 8 chr3_random 3109395 3110404 -5317877 - MER11A LTR ERVK 0 1266 1 6068 212 24 8 chr3_random 3110404 3111576 -5316705 - L1PA15-16 LINE L1 -5520 1329 139 6556 193 35 3 chr3_random 3112208 3113055 -5315226 - L1PA13 LINE L1 -1 6162 5343 324 0 0 0 chr3_random 3113055 3113091 -5315190 + (TG)n Simple_repeat Simple_repeat 1 36 0 6556 193 35 3 chr3_random 3113091 3114406 -5313875 - L1PA13 LINE L1 -820 5343 3943 48 18 0 0 chr3_random 3114692 3114747 -5313534 + AT_rich Low_complexity Low_complexity 1 55 0 37 39 0 0 chr3_random 3115158 3115209 -5313072 + AT_rich Low_complexity Low_complexity 1 51 0 2314 84 0 3 chr3_random 3117022 3117331 -5310950 - AluY SINE Alu -3 308 1 22 0 0 0 chr3_random 3117514 3117536 -5310745 + AT_rich Low_complexity Low_complexity 1 22 0 1153 192 33 65 chr3_random 3117994 3118368 -5309913 + MER67D LTR ERV1 1 403 -242 32 43 0 0 chr3_random 3118626 3118672 -5309609 + AT_rich Low_complexity Low_complexity 1 46 0 306 368 18 31 chr3_random 3118854 3119017 -5309264 - MIR3 SINE MIR -18 190 30 7194 204 49 30 chr3_random 3120148 3121801 -5306480 - MER52A LTR ERV1 0 1755 1 261 83 0 0 chr3_random 3122522 3122558 -5305723 + (T)n Simple_repeat Simple_repeat 1 36 0 1073 225 60 136 chr3_random 3122782 3123334 -5304947 - MER67D LTR ERV1 -4 510 1 2728 162 37 30 chr3_random 3124009 3124600 -5303681 + LTR49 LTR ERV1 1 595 0 493 330 30 30 chr3_random 3124877 3125107 -5303174 + LTR38 LTR ERV1 138 367 -189 341 354 40 15 chr3_random 3125107 3125305 -5302976 + PABL_B-int LTR ERV1 6658 6860 -262 979 248 47 99 chr3_random 3125624 3126067 -5302214 + LTR38 LTR ERV1 137 556 0 1688 181 7 3 chr3_random 3126841 3127139 -5301142 + AluJb SINE Alu 1 299 -13 2307 156 34 48 chr3_random 3127532 3128006 -5300275 + LTR24 LTR ERV1 1 467 0 1233 249 20 27 chr3_random 3128006 3128506 -5299775 + LTR24-int LTR ERV1 1 636 -4487 404 229 0 29 chr3_random 3128839 3128944 -5299337 + LTR24-int LTR ERV1 645 746 -4377 198 91 0 0 chr3_random 3129105 3129138 -5299143 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr3_random 3130274 3130295 -5297986 + AT_rich Low_complexity Low_complexity 1 21 0 29 84 0 0 chr3_random 3130648 3130719 -5297562 + AT_rich Low_complexity Low_complexity 1 71 0 5083 65 1 0 chr3_random 3130806 3131454 -5296827 - L1PA7 LINE L1 -11 6143 5495 21 0 0 0 chr3_random 3131603 3131624 -5296657 + AT_rich Low_complexity Low_complexity 1 21 0 307 247 0 34 chr3_random 3131954 3132043 -5296238 + LTR24-int LTR ERV1 3336 3421 -4978 2751 120 21 53 chr3_random 3132695 3133163 -5295118 + MLT2A2 LTR ERVL 1 453 0 11679 98 20 25 chr3_random 3133163 3134886 -5293395 + HERVL-A2 LTR ERVL 1 1715 -3939 4964 88 9 3 chr3_random 3134890 3135568 -5292713 + HERVL-A2 LTR ERVL 4965 5646 -8 3008 119 16 2 chr3_random 3135571 3136018 -5292263 + MLT2A2 LTR ERVL 1 453 0 350 367 73 42 chr3_random 3136326 3136735 -5291546 + LTR24-int LTR ERV1 3420 3841 -2960 326 354 34 44 chr3_random 3137416 3137800 -5290481 + LTR24-int LTR ERV1 2177 2556 -2091 289 210 49 25 chr3_random 3137948 3138029 -5290252 + LTR24-int LTR ERV1 4994 5076 -1725 192 77 0 0 chr3_random 3138059 3138085 -5290196 + (A)n Simple_repeat Simple_repeat 1 26 0 643 348 7 14 chr3_random 3139052 3139345 -5288936 + LTR24-int LTR ERV1 6395 6685 -437 573 222 0 0 chr3_random 3139718 3139835 -5288446 + LTR24-int LTR ERV1 5007 5123 0 2328 193 15 28 chr3_random 3139835 3140268 -5288013 + LTR24 LTR ERV1 1 429 -38 2036 121 7 0 chr3_random 3140268 3140573 -5287708 - AluSx SINE Alu -5 307 1 2328 193 15 28 chr3_random 3140573 3140610 -5287671 + LTR24 LTR ERV1 429 465 -2 234 105 0 0 chr3_random 3141015 3141053 -5287228 + (TC)n Simple_repeat Simple_repeat 1 38 0 738 233 0 6 chr3_random 3141699 3141858 -5286423 - MLT1D LTR MaLR -1 504 347 367 222 16 113 chr3_random 3141876 3142129 -5286152 - MLT1E2 LTR MaLR -281 224 2 2244 72 3 10 chr3_random 3142788 3143093 -5285188 + AluY SINE Alu 1 303 -8 212 310 198 9 chr3_random 3143133 3143249 -5285032 - MIR SINE MIR -122 140 3 340 288 29 44 chr3_random 3144257 3144462 -5283819 - L1ME LINE L1 -331 5790 5589 21 57 0 0 chr3_random 3144766 3144801 -5283480 + AT_rich Low_complexity Low_complexity 1 35 0 245 315 67 48 chr3_random 3146912 3147077 -5281204 + MIR SINE MIR 30 197 -65 241 323 50 20 chr3_random 3150409 3150508 -5277773 + MIR3 SINE MIR 82 183 -25 303 28 0 0 chr3_random 3150690 3150726 -5277555 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 100 0 0 chr3_random 3151350 3151404 -5276877 + Alu SINE Alu 242 287 -15 1900 141 0 18 chr3_random 3151692 3151976 -5276305 - AluSx SINE Alu -33 279 1 249 33 0 0 chr3_random 3153009 3153039 -5275242 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 23 33 0 0 chr3_random 3154213 3154243 -5274038 + AT_rich Low_complexity Low_complexity 1 30 0 2223 77 3 3 chr3_random 3154251 3154550 -5273731 - AluY SINE Alu -12 299 1 24 32 0 0 chr3_random 3154964 3154995 -5273286 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr3_random 3155771 3155791 -5272490 + (TC)n Simple_repeat Simple_repeat 1 20 0 2870 171 61 18 chr3_random 3155929 3156549 -5271732 + MER39B LTR ERV1 5 651 -2 321 26 0 0 chr3_random 3156562 3156600 -5271681 + (TA)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr3_random 3156724 3156751 -5271530 + AT_rich Low_complexity Low_complexity 1 27 0 2267 98 0 0 chr3_random 3157188 3157485 -5270796 + AluSx SINE Alu 3 299 -13 612 387 63 24 chr3_random 3159342 3159848 -5268433 - L3 LINE CR1 -6 1571 1046 231 259 167 28 chr3_random 3159873 3159981 -5268300 - L2 LINE L2 0 3313 3191 401 318 69 2 chr3_random 3160020 3160189 -5268092 - MER63A DNA MER1_type 0 210 27 2308 57 33 0 chr3_random 3161035 3161335 -5266946 + AluY SINE Alu 1 310 -1 998 252 222 22 chr3_random 3164376 3164781 -5263500 - MLT1D LTR MaLR -13 492 7 1660 321 113 37 chr3_random 3164939 3165442 -5262839 - L2 LINE L2 -2 3311 2848 1644 154 15 4 chr3_random 3165442 3165702 -5262579 - AluSq SINE Alu -50 263 1 1660 321 113 37 chr3_random 3165702 3166604 -5261677 - L2 LINE L2 -465 2848 1792 655 246 80 20 chr3_random 3166872 3167071 -5261210 - MIR SINE MIR -21 241 31 1183 309 41 30 chr3_random 3167088 3167150 -5261131 - L2 LINE L2 -1666 1648 1588 1086 198 30 118 chr3_random 3167150 3167550 -5260731 + MLT1A1 LTR MaLR 1 365 0 1183 309 41 30 chr3_random 3167550 3167947 -5260334 - L2 LINE L2 -1726 1588 1184 255 229 94 42 chr3_random 3168988 3169084 -5259197 + L1MEd LINE L1 136 236 -5969 1356 235 39 97 chr3_random 3169091 3169389 -5258892 + L1MEd LINE L1 1898 2212 -4003 1554 201 21 0 chr3_random 3169389 3169702 -5258579 + AluJo SINE Alu 10 312 0 1356 235 39 97 chr3_random 3169702 3170409 -5257872 + L1MEd LINE L1 2212 2803 -3412 2555 23 0 13 chr3_random 3171951 3172258 -5256023 + AluY SINE Alu 1 303 -8 223 284 84 100 chr3_random 3172326 3172516 -5255765 + MIR3 SINE MIR 17 203 -5 208 207 0 37 chr3_random 3172762 3172844 -5255437 + (TA)n Simple_repeat Simple_repeat 2 80 0 29 47 0 0 chr3_random 3173161 3173204 -5255077 + AT_rich Low_complexity Low_complexity 1 43 0 892 156 276 0 chr3_random 3173451 3173650 -5254631 + L1MCa LINE L1 1914 2167 -4259 1558 133 10 84 chr3_random 3173650 3173826 -5254455 - Tigger1 DNA MER2_type 0 2418 2230 1838 136 0 4 chr3_random 3173826 3174105 -5254176 + AluSq SINE Alu 1 278 -35 925 67 0 0 chr3_random 3174106 3174225 -5254056 + L1PA5 LINE L1 6025 6143 -11 1558 133 10 84 chr3_random 3174225 3174355 -5253926 - Tigger1 DNA MER2_type -187 2231 2133 1330 169 169 0 chr3_random 3174589 3174844 -5253437 - AluSx SINE Alu -4 298 1 200 125 50 0 chr3_random 3176063 3176103 -5252178 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 310 305 0 0 chr3_random 3177324 3177406 -5250875 + L2 LINE L2 3186 3267 -5 24 32 0 0 chr3_random 3177434 3177465 -5250816 + AT_rich Low_complexity Low_complexity 1 31 0 357 97 105 7 chr3_random 3177475 3177752 -5250529 + (TA)n Simple_repeat Simple_repeat 1 304 0 270 139 33 33 chr3_random 3177753 3177904 -5250377 + (TATAA)n Simple_repeat Simple_repeat 1 151 0 352 200 33 33 chr3_random 3177923 3178103 -5250178 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 315 226 28 28 chr3_random 3178114 3178291 -5249990 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 394 214 31 21 chr3_random 3178302 3178593 -5249688 + (TATAA)n Simple_repeat Simple_repeat 1 294 0 2453 49 0 0 chr3_random 3178594 3178900 -5249381 - L1P LINE L1 -3915 2231 1926 6815 37 5 54 chr3_random 3178900 3180154 -5248127 + L1PA4 LINE L1 4937 6144 -11 369 0 0 0 chr3_random 3180258 3180299 -5247982 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1449 171 33 25 chr3_random 3180388 3180746 -5247535 + Tigger5 DNA MER2_type 66 2323 0 23 54 0 0 chr3_random 3180775 3180812 -5247469 + AT_rich Low_complexity Low_complexity 1 37 0 704 240 111 22 chr3_random 3180865 3181236 -5247045 + Zaphod DNA AcHobo 3620 4023 -8 649 203 14 0 chr3_random 3181236 3181374 -5246907 + L1 LINE L1 4190 4329 -1817 7108 224 22 21 chr3_random 3183073 3184310 -5243971 - L1 LINE L1 -1817 4329 3094 8847 43 3 1 chr3_random 3184310 3185377 -5242904 + MER11C LTR ERVK 1 1069 -2 7108 224 22 21 chr3_random 3185377 3185546 -5242735 - L1 LINE L1 -3052 3094 2927 2087 118 10 0 chr3_random 3185546 3185835 -5242446 - AluY SINE Alu -19 292 1 7108 224 22 21 chr3_random 3185835 3186303 -5241978 - L1 LINE L1 -3219 2927 2453 5696 156 14 11 chr3_random 3186303 3187267 -5241014 + Tigger1 DNA MER2_type 1383 2349 -69 259 250 14 0 chr3_random 3187294 3187366 -5240915 + L1MC4 LINE L1 6629 6701 -1341 240 239 23 11 chr3_random 3187384 3187472 -5240809 - L1MC4 LINE L1 -1340 6702 6614 246 161 32 81 chr3_random 3187858 3187920 -5240361 - L2 LINE L2 -1274 2040 1982 1865 149 3 32 chr3_random 3188379 3188695 -5239586 - AluSx SINE Alu -5 307 1 38 85 0 0 chr3_random 3188738 3188832 -5239449 + AT_rich Low_complexity Low_complexity 1 94 0 27 29 0 0 chr3_random 3189311 3189345 -5238936 + AT_rich Low_complexity Low_complexity 1 34 0 726 258 16 0 chr3_random 3190342 3190528 -5237753 - MER5A DNA MER1_type 0 189 1 912 295 81 18 chr3_random 3190928 3191386 -5236895 + L1MCb LINE L1 3 489 -5556 2074 226 23 0 chr3_random 3191412 3191882 -5236399 + L1MC3 LINE L1 5483 5963 -1822 402 156 26 13 chr3_random 3191892 3191969 -5236312 - MLT1A1 LTR MaLR -287 78 1 34 24 0 0 chr3_random 3192992 3193033 -5235248 + AT_rich Low_complexity Low_complexity 1 41 0 2256 114 26 0 chr3_random 3193033 3193384 -5234897 - L1PB2 LINE L1 -3 6864 6505 403 172 62 4 chr3_random 3193405 3193922 -5234359 + (TA)n Simple_repeat Simple_repeat 1 546 0 238 167 33 0 chr3_random 3193951 3194011 -5234270 + (TA)n Simple_repeat Simple_repeat 1 62 0 2811 101 7 10 chr3_random 3194011 3194417 -5233864 - L1PB2 LINE L1 -360 6507 6103 13026 193 58 7 chr3_random 3194451 3194961 -5233320 - L1PB2 LINE L1 -746 6116 5633 213 65 0 0 chr3_random 3194961 3194992 -5233289 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13026 193 58 7 chr3_random 3194992 3195422 -5232859 - L1PB2 LINE L1 -1229 5633 5226 275 0 0 28 chr3_random 3195422 3195458 -5232823 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 13026 193 58 7 chr3_random 3195458 3201230 -5227051 - L1PB2 LINE L1 -1636 5226 1 2475 0 0 0 chr3_random 3201238 3201506 -5226775 - AluYa5 SINE Alu -5 306 39 33 0 0 0 chr3_random 3201561 3201594 -5226687 + AT_rich Low_complexity Low_complexity 1 33 0 278 325 32 0 chr3_random 3202001 3202124 -5226157 - LTR67 LTR ERVL -3 554 428 1597 130 121 128 chr3_random 3202175 3202606 -5225675 - MSTA LTR MaLR 0 428 1 466 325 73 5 chr3_random 3203185 3203376 -5224905 + MIR SINE MIR 58 261 -1 2533 70 0 6 chr3_random 3203422 3203734 -5224547 + AluSg SINE Alu 1 310 0 21 57 0 0 chr3_random 3204477 3204512 -5223769 + AT_rich Low_complexity Low_complexity 1 35 0 192 360 35 0 chr3_random 3205878 3205964 -5222317 - L2 LINE L2 0 3313 3225 229 307 23 11 chr3_random 3206218 3206306 -5221975 + CT-rich Low_complexity Low_complexity 3 91 0 25 0 0 0 chr3_random 3208913 3208938 -5219343 + AT_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr3_random 3209030 3209079 -5219202 + AT_rich Low_complexity Low_complexity 1 49 0 2193 107 0 13 chr3_random 3213325 3213633 -5214648 + AluSc SINE Alu 1 304 -5 342 272 143 42 chr3_random 3214107 3214324 -5213957 + L2 LINE L2 2198 2436 -878 1515 72 5 0 chr3_random 3214756 3214949 -5213332 + AluY SINE Alu 1 194 -117 880 215 61 35 chr3_random 3215140 3215401 -5212880 + L1ME1 LINE L1 4446 4713 -1433 201 74 0 0 chr3_random 3215473 3215500 -5212781 + (A)n Simple_repeat Simple_repeat 1 27 0 1517 271 75 11 chr3_random 3215563 3215684 -5212597 + L1ME1 LINE L1 4702 4814 -1352 1775 252 76 16 chr3_random 3215684 3216292 -5211989 + LTR48B LTR ERV1 1 644 0 1517 271 75 11 chr3_random 3216292 3217187 -5211094 + L1ME1 LINE L1 4814 5806 -360 1807 212 8 11 chr3_random 3217187 3217545 -5210736 - MLT1A1 LTR MaLR 0 365 9 294 224 113 64 chr3_random 3217548 3217796 -5210485 + L1ME1 LINE L1 5801 6099 -67 213 65 0 0 chr3_random 3217801 3217832 -5210449 + (CA)n Simple_repeat Simple_repeat 2 32 0 1529 264 53 66 chr3_random 3218416 3219003 -5209278 + MLT1E1 LTR MaLR 73 651 -3 853 251 70 74 chr3_random 3219113 3219559 -5208722 - LTR37B LTR ERV1 -10 458 15 955 240 65 0 chr3_random 3221695 3221941 -5206340 - L1P LINE L1 -851 5295 5034 2016 60 48 4 chr3_random 3221941 3222237 -5206044 - AluY SINE Alu 0 308 1 9982 43 2 0 chr3_random 3222354 3223614 -5204667 - L1P LINE L1 -3016 3130 1869 348 43 0 0 chr3_random 3223715 3223762 -5204519 - AluY SINE Alu -255 47 1 1894 155 10 3 chr3_random 3223762 3224066 -5204215 - AluSq SINE Alu -7 306 1 535 260 79 12 chr3_random 3224067 3224321 -5203960 - L1MCa LINE L1 -5341 1223 953 2160 288 43 37 chr3_random 3224358 3225217 -5203064 - L1MCa LINE L1 -5178 867 4 929 83 0 0 chr3_random 3225531 3225652 -5202629 + AluY SINE Alu 1 121 -190 4711 67 22 0 chr3_random 3225752 3226503 -5201778 - L1PA7 LINE L1 -287 5867 5106 526 78 0 0 chr3_random 3226501 3226578 -5201703 + L1PA7 LINE L1 5008 5084 -1062 * 1516 203 21 0 chr3_random 3226753 3227043 -5201238 - AluJb SINE Alu -16 296 1 24 0 0 0 chr3_random 3227160 3227184 -5201097 + AT_rich Low_complexity Low_complexity 1 24 0 1680 171 0 0 chr3_random 3227964 3228238 -5200043 + AluSx SINE Alu 1 274 -38 26 0 0 0 chr3_random 3228300 3228326 -5199955 + AT_rich Low_complexity Low_complexity 1 26 0 205 245 19 0 chr3_random 3228353 3228406 -5199875 + (TG)n Simple_repeat Simple_repeat 2 55 0 888 92 14 14 chr3_random 3228847 3228989 -5199292 + THE1C-int LTR MaLR 1439 1580 0 688 110 10 0 chr3_random 3229096 3229196 -5199085 + THE1C LTR MaLR 28 128 -247 1626 232 15 35 chr3_random 3230005 3230512 -5197769 + L1ME LINE L1 5208 5703 -481 462 36 0 0 chr3_random 3230978 3231034 -5197247 + (TA)n Simple_repeat Simple_repeat 2 57 0 355 265 0 20 chr3_random 3231150 3231248 -5197033 + CT-rich Low_complexity Low_complexity 3 98 0 554 126 11 0 chr3_random 3231586 3231673 -5196608 - AluSg/x SINE Alu -17 295 208 24 32 0 0 chr3_random 3232351 3232382 -5195899 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr3_random 3232435 3232464 -5195817 + AT_rich Low_complexity Low_complexity 1 29 0 728 267 83 30 chr3_random 3232844 3233397 -5194884 - LTR36 LTR ERV1 -1 610 1 252 281 62 0 chr3_random 3234527 3234655 -5193626 + L1ME LINE L1 5759 5894 -227 803 240 43 66 chr3_random 3234824 3235243 -5193038 + MLT1A1 LTR MaLR 2 365 0 708 177 0 43 chr3_random 3235816 3235957 -5192324 - L1PB4 LINE L1 -1 6155 6021 737 185 25 51 chr3_random 3235957 3235973 -5192308 - L1PB4 LINE L1 -2 6154 6003 295 181 43 112 chr3_random 3236915 3236950 -5191331 + LTR52 LTR ERVL 13 49 -372 1703 158 10 3 chr3_random 3236950 3237241 -5191040 - AluJb SINE Alu -17 295 3 295 181 43 112 chr3_random 3237241 3237321 -5190960 + LTR52 LTR ERVL 49 120 -301 15561 40 0 2 chr3_random 3237706 3240185 -5188096 - L1PA3 LINE L1 -215 5940 3466 13127 60 1 4 chr3_random 3240285 3241967 -5186314 - L1PA3 LINE L1 -4463 1683 8 2869 212 5 0 chr3_random 3241972 3242572 -5185709 - L1 LINE L1 -1116 5030 4428 3505 173 15 19 chr3_random 3242581 3242603 -5185678 + L1PA16 LINE L1 5310 5331 -835 1876 155 7 0 chr3_random 3242603 3242893 -5185388 + AluSx SINE Alu 1 292 -20 3505 173 15 19 chr3_random 3242893 3243054 -5185227 + L1PA16 LINE L1 5331 5491 -675 233 29 29 0 chr3_random 3243054 3243088 -5185193 + (CA)n Simple_repeat Simple_repeat 2 36 0 3505 173 15 19 chr3_random 3243088 3243616 -5184665 + L1PA16 LINE L1 5491 6022 -144 366 116 14 0 chr3_random 3243640 3243709 -5184572 + L1PA16 LINE L1 6097 6166 0 1190 274 18 20 chr3_random 3243759 3244160 -5184121 + L1MB1 LINE L1 2199 2598 -3548 311 186 0 0 chr3_random 3244222 3244281 -5184000 + Tigger5 DNA MER2_type 2265 2323 0 240 213 16 33 chr3_random 3244345 3244406 -5183875 + Tigger5 DNA MER2_type 2264 2323 0 7373 258 56 30 chr3_random 3244406 3244708 -5183573 + L1MB1 LINE L1 2624 2916 -3230 6723 42 0 0 chr3_random 3244708 3245524 -5182757 + L1PA4 LINE L1 5338 6153 -2 7373 258 56 30 chr3_random 3245524 3247617 -5180664 + L1MB1 LINE L1 2916 5083 -1063 2926 178 72 47 chr3_random 3247621 3248328 -5179953 + L1MB1 LINE L1 5443 6167 -1 21 0 0 0 chr3_random 3248328 3248349 -5179932 + AT_rich Low_complexity Low_complexity 1 21 0 1301 238 11 50 chr3_random 3248623 3249002 -5179279 - MLT1D LTR MaLR -141 364 1 1291 212 77 37 chr3_random 3249002 3249379 -5178902 + L1MB8 LINE L1 5787 6178 0 1121 279 64 44 chr3_random 3249384 3250197 -5178084 + L1ME1 LINE L1 2914 3742 -2404 2839 268 89 23 chr3_random 3250215 3250963 -5177318 + L1ME1 LINE L1 3821 4518 -1648 2348 77 0 0 chr3_random 3250963 3251274 -5177007 + AluYa5 SINE Alu 1 311 0 2839 268 89 23 chr3_random 3251274 3252519 -5175762 + L1ME1 LINE L1 4518 5944 -222 1494 197 46 46 chr3_random 3252541 3252931 -5175350 + MLT1B LTR MaLR 1 390 0 745 246 38 9 chr3_random 3252951 3253200 -5175081 + L1ME3A LINE L1 5738 5993 -177 1986 117 3 3 chr3_random 3253239 3253522 -5174759 + AluSp SINE Alu 1 283 -30 246 318 0 11 chr3_random 3253721 3253809 -5174472 - L1ME3A LINE L1 -6 6164 6078 504 86 0 0 chr3_random 3254140 3254210 -5174071 + (TA)n Simple_repeat Simple_repeat 2 71 0 274 232 0 0 chr3_random 3255373 3255429 -5172852 - L1M3f LINE L1 -4720 608 553 3447 160 36 2 chr3_random 3255429 3256042 -5172239 + L1MA4 LINE L1 5387 6020 -280 364 146 49 0 chr3_random 3256054 3256136 -5172145 + L1MB3 LINE L1 6096 6181 -2 222 191 0 0 chr3_random 3257129 3257171 -5171110 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr3_random 3257771 3257792 -5170489 + AT_rich Low_complexity Low_complexity 1 21 0 511 283 90 0 chr3_random 3258830 3259053 -5169228 + MLT1F1 LTR MaLR 325 567 0 269 232 161 9 chr3_random 3259366 3259478 -5168803 - L2 LINE L2 0 3313 3185 212 349 0 0 chr3_random 3259616 3259682 -5168599 + CT-rich Low_complexity Low_complexity 2 67 0 2641 230 56 30 chr3_random 3259880 3260704 -5167577 - L1MB8 LINE L1 -129 6049 5208 243 0 0 0 chr3_random 3260720 3260747 -5167534 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 609 289 0 0 chr3_random 3260747 3260896 -5167385 - FRAM SINE Alu -17 149 1 2318 240 38 74 chr3_random 3260898 3261820 -5166461 - L1MB8 LINE L1 -1495 4651 3763 696 291 17 0 chr3_random 3262004 3262176 -5166105 - MIR SINE MIR -8 254 80 293 385 87 22 chr3_random 3262556 3262787 -5165494 - L2 LINE L2 -2833 481 236 22 0 0 0 chr3_random 3263639 3263661 -5164620 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr3_random 3264135 3264177 -5164104 + AT_rich Low_complexity Low_complexity 1 42 0 4615 165 28 36 chr3_random 3264636 3265576 -5162705 - L1PB4 LINE L1 -2 6154 5221 393 78 0 223 chr3_random 3265848 3265951 -5162330 + MADE1 DNA Mariner 1 80 0 2067 272 18 0 chr3_random 3266236 3266743 -5161538 + LTR53 LTR ERVL 1 516 -3 295 340 29 10 chr3_random 3266892 3266995 -5161286 - L2 LINE L2 -1 3312 3208 374 156 0 219 chr3_random 3267773 3268011 -5160270 - MER53 DNA DNA 0 189 4 22 70 0 0 chr3_random 3268177 3268220 -5160061 + AT_rich Low_complexity Low_complexity 1 43 0 490 231 19 0 chr3_random 3268707 3268811 -5159470 - LTR39 LTR ERV1 -81 702 597 1088 173 15 132 chr3_random 3268886 3269228 -5159053 - LTR39 LTR ERV1 -481 302 1 332 310 26 17 chr3_random 3269620 3269736 -5158545 - L1MC4 LINE L1 -170 7872 7756 1648 192 11 27 chr3_random 3269980 3270345 -5157936 + L1PA16 LINE L1 5808 6166 0 4261 16 0 4 chr3_random 3270878 3271374 -5156907 + L1PA2 LINE L1 5662 6155 0 46 19 0 0 chr3_random 3271546 3271599 -5156682 + AT_rich Low_complexity Low_complexity 1 53 0 477 286 53 15 chr3_random 3272310 3272572 -5155709 + L1ME LINE L1 1205 1476 -4920 373 325 64 49 chr3_random 3272593 3272796 -5155485 + L1ME LINE L1 1579 1784 -4612 1124 291 93 32 chr3_random 3272891 3273416 -5154865 - MER68 LTR ERV1 0 562 6 372 225 84 49 chr3_random 3273764 3273906 -5154375 + L1ME LINE L1 2280 2426 -3789 462 252 27 14 chr3_random 3274009 3274197 -5154084 + L1M4 LINE L1 4406 4604 -1542 3092 173 12 24 chr3_random 3274332 3274993 -5153288 - L1MA7 LINE L1 -5 6286 5634 554 260 8 0 chr3_random 3275022 3275149 -5153132 + L1ME3 LINE L1 6000 6127 -35 672 254 127 3 chr3_random 3275734 3276033 -5152248 + LTR37A LTR ERV1 78 413 -13 21 0 0 0 chr3_random 3276245 3276266 -5152015 + AT_rich Low_complexity Low_complexity 1 21 0 2308 94 0 0 chr3_random 3276350 3276647 -5151634 - AluSq SINE Alu -13 300 4 751 291 76 68 chr3_random 3276836 3277588 -5150693 + L1ME LINE L1 3931 4688 -1527 2042 124 3 7 chr3_random 3277779 3278078 -5150203 - AluSx SINE Alu -14 298 1 382 275 32 87 chr3_random 3278370 3278588 -5149693 + L1ME LINE L1 5530 5735 -504 5230 147 96 43 chr3_random 3278625 3278769 -5149512 - Tigger3(Golem) DNA MER2_type 0 3029 2894 2047 116 51 31 chr3_random 3278769 3279123 -5149158 + THE1B LTR MaLR 1 361 -3 5230 147 96 43 chr3_random 3279123 3279186 -5149095 - Tigger3(Golem) DNA MER2_type -135 2894 2836 1522 200 44 4 chr3_random 3279186 3279461 -5148820 + AluJo SINE Alu 1 286 -26 5230 147 96 43 chr3_random 3279461 3280083 -5148198 - Tigger3(Golem) DNA MER2_type -193 2836 2123 2865 130 26 0 chr3_random 3280083 3280543 -5147738 + L1PA14 LINE L1 5685 6156 -5 5230 147 96 43 chr3_random 3280543 3280824 -5147457 - Tigger3(Golem) DNA MER2_type -906 2123 1858 238 301 182 40 chr3_random 3280883 3281059 -5147222 - MIR SINE MIR -14 248 48 23 54 0 0 chr3_random 3281232 3281269 -5147012 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr3_random 3281722 3281767 -5146514 + AT_rich Low_complexity Low_complexity 1 45 0 2385 72 0 3 chr3_random 3281923 3282229 -5146052 + AluY SINE Alu 1 305 -6 281 293 73 16 chr3_random 3282413 3282536 -5145745 + MIR SINE MIR 101 230 -32 333 221 0 0 chr3_random 3282716 3282820 -5145461 + L1MA7 LINE L1 6178 6281 -10 27 42 0 56 chr3_random 3282887 3282958 -5145323 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr3_random 3283885 3283915 -5144366 + AT_rich Low_complexity Low_complexity 1 30 0 1013 154 0 12 chr3_random 3284376 3284545 -5143736 - AluSg/x SINE Alu -12 300 134 981 245 100 24 chr3_random 3284974 3285354 -5142927 + L1MCa LINE L1 779 1187 -5239 18609 148 8 11 chr3_random 3285420 3287198 -5141083 - L1PA10 LINE L1 -10 6158 4376 2216 117 0 3 chr3_random 3287198 3287497 -5140784 - AluSq SINE Alu -15 298 1 18609 148 8 11 chr3_random 3287497 3289844 -5138437 - L1PA10 LINE L1 -1792 4376 2049 3847 198 23 6 chr3_random 3289852 3290638 -5137643 - L1M2c LINE L1 -4740 1721 953 1575 234 34 11 chr3_random 3290637 3291078 -5137203 - L1M4 LINE L1 -476 5708 5258 * 23 0 0 0 chr3_random 3292316 3292339 -5135942 + AT_rich Low_complexity Low_complexity 1 23 0 405 320 14 7 chr3_random 3292422 3292569 -5135712 + LTR16C LTR ERVL 307 454 -37 1092 237 89 33 chr3_random 3292672 3292976 -5135305 + MLT2D LTR ERVL 1 321 -93 182 143 20 0 chr3_random 3293045 3293094 -5135187 + (TA)n Simple_repeat Simple_repeat 2 51 0 242 370 44 0 chr3_random 3293501 3293619 -5134662 + MIR SINE MIR 1 128 -80 225 255 10 41 chr3_random 3293824 3293922 -5134359 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 1944 135 30 3 chr3_random 3294645 3294948 -5133333 - AluSp SINE Alu -2 311 1 451 243 108 106 chr3_random 3294948 3295327 -5132954 + MLT1J LTR MaLR 58 437 -74 1349 183 11 7 chr3_random 3295347 3295621 -5132660 - L1MC3 LINE L1 -64 7721 7447 2333 197 29 2 chr3_random 3295621 3296099 -5132182 - L1MC1 LINE L1 -191 6142 5652 472 421 62 46 chr3_random 3296114 3296613 -5131668 - L1M4 LINE L1 -1898 4248 3742 888 253 119 17 chr3_random 3296630 3297496 -5130785 - L1MEc LINE L1 -3644 2782 1862 213 39 0 0 chr3_random 3297497 3297523 -5130758 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 265 274 64 39 chr3_random 3297569 3297773 -5130508 - L1MEc LINE L1 -4820 1606 1398 467 280 0 34 chr3_random 3297780 3297955 -5130326 - L1MEc LINE L1 -5180 1246 1078 2519 58 0 3 chr3_random 3297955 3298267 -5130014 - AluY SINE Alu 0 311 1 1768 178 10 3 chr3_random 3298267 3298571 -5129710 - AluSq SINE Alu -7 306 1 1260 256 64 36 chr3_random 3298990 3299512 -5128769 - LTR27 LTR ERV1 -141 495 2 411 319 126 47 chr3_random 3300025 3300518 -5127763 - L2 LINE L2 -448 2866 2335 2065 205 49 41 chr3_random 3300526 3300599 -5127682 + MER92B LTR ERV1 1 72 -564 3473 149 76 18 chr3_random 3300599 3301221 -5127060 - PABL_A LTR ERV1 0 660 3 2065 205 49 41 chr3_random 3301221 3301702 -5126579 + MER92B LTR ERV1 72 559 -77 220 170 21 21 chr3_random 3302432 3302479 -5125802 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 258 148 0 0 chr3_random 3302579 3302633 -5125648 + (TG)n Simple_repeat Simple_repeat 2 55 0 23 54 0 0 chr3_random 3303542 3303579 -5124702 + AT_rich Low_complexity Low_complexity 1 37 0 4890 180 35 37 chr3_random 3304066 3304095 -5124186 + L1PA16 LINE L1 4289 4317 -1849 2139 114 0 3 chr3_random 3304095 3304392 -5123889 + AluSq SINE Alu 1 296 -17 4890 180 35 37 chr3_random 3304392 3305883 -5122398 + L1PA16 LINE L1 4317 5788 -378 405 0 0 0 chr3_random 3305883 3305928 -5122353 + (TA)n Simple_repeat Simple_repeat 1 45 0 4890 180 35 37 chr3_random 3305928 3306298 -5121983 + L1PA16 LINE L1 5788 6157 -9 26 30 0 0 chr3_random 3306298 3306331 -5121950 + AT_rich Low_complexity Low_complexity 1 33 0 228 257 0 0 chr3_random 3306399 3306469 -5121812 + GA-rich Low_complexity Low_complexity 4 73 0 904 245 83 30 chr3_random 3308354 3308782 -5119499 - L1MEc LINE L1 -3671 2755 2336 314 61 20 0 chr3_random 3308782 3308831 -5119450 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 480 264 35 13 chr3_random 3308832 3308935 -5119346 - L1MEc LINE L1 -4195 2287 2188 2541 232 10 69 chr3_random 3308935 3309702 -5118579 + MER72 LTR ERV1 1 722 0 480 264 35 13 chr3_random 3309702 3309808 -5118473 - L1MEc LINE L1 -4294 2188 2057 443 193 44 18 chr3_random 3309800 3309914 -5118367 - L1MEc LINE L1 -4757 1669 1553 * 310 250 46 37 chr3_random 3310224 3310332 -5117949 - MLT1G1 LTR MaLR -216 379 271 448 315 151 33 chr3_random 3310347 3310652 -5117629 - MLT1G1 LTR MaLR -2 593 253 358 263 45 22 chr3_random 3310720 3310899 -5117382 - L1M4 LINE L1 -789 5357 5175 * 379 169 212 0 chr3_random 3310894 3310947 -5117334 - L1MA10 LINE L1 0 6334 6282 354 240 104 32 chr3_random 3310947 3311101 -5117180 - L1ME1 LINE L1 -69 6097 5933 489 286 173 38 chr3_random 3311101 3311679 -5116602 - L1M4 LINE L1 -2247 3899 3178 3103 42 3 3 chr3_random 3311679 3312065 -5116216 + L1PA5 LINE L1 5761 6146 -8 489 286 173 38 chr3_random 3312065 3312301 -5115980 - L1M4 LINE L1 -2968 3178 2975 454 240 54 87 chr3_random 3312296 3312538 -5115743 + L1ME1 LINE L1 5761 5994 -172 * 1642 277 75 31 chr3_random 3312635 3313276 -5115005 - L1ME1 LINE L1 -438 5728 5117 1854 123 53 20 chr3_random 3313276 3313578 -5114703 - AluSx SINE Alu 0 312 1 1642 277 75 31 chr3_random 3313578 3314335 -5113946 - L1ME1 LINE L1 -1049 5117 4273 595 206 8 0 chr3_random 3314364 3314495 -5113786 + L1MC3 LINE L1 6906 7037 -748 * 2668 192 46 5 chr3_random 3314492 3315060 -5113221 + L1MC2 LINE L1 5312 5902 -442 1088 233 19 103 chr3_random 3315061 3315485 -5112796 + MLT2B1 LTR ERVL 1 480 -40 342 182 0 0 chr3_random 3315485 3315551 -5112730 + (TA)n Simple_repeat Simple_repeat 2 67 0 359 335 157 5 chr3_random 3315918 3316115 -5112166 - MIR SINE MIR -30 232 6 272 253 0 44 chr3_random 3316569 3316660 -5111621 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 21 82 0 0 chr3_random 3316692 3316741 -5111540 + AT_rich Low_complexity Low_complexity 1 49 0 185 308 125 0 chr3_random 3316840 3316944 -5111337 + MIR SINE MIR 82 198 -64 27 0 0 0 chr3_random 3317410 3317437 -5110844 + AT_rich Low_complexity Low_complexity 1 27 0 260 231 67 77 chr3_random 3318483 3318587 -5109694 - MIR SINE MIR -8 254 152 635 227 119 16 chr3_random 3321126 3321320 -5106961 - L1MC3 LINE L1 -3 7782 7569 * 895 197 28 62 chr3_random 3321308 3321597 -5106684 - L1MC3 LINE L1 -705 7080 6802 524 148 93 9 chr3_random 3321833 3321941 -5106340 + MLT1C LTR MaLR 65 181 -286 2726 153 28 74 chr3_random 3321951 3322531 -5105750 - MLT2B3 LTR ERVL 0 554 2 859 257 84 15 chr3_random 3322532 3322793 -5105488 + MLT1C LTR MaLR 187 465 -2 21 0 0 0 chr3_random 3322794 3322815 -5105466 + AT_rich Low_complexity Low_complexity 1 21 0 421 343 124 0 chr3_random 3322906 3323084 -5105197 - MIR SINE MIR -10 252 53 220 227 0 40 chr3_random 3323161 3323265 -5105016 + CT-rich Low_complexity Low_complexity 1 99 0 236 343 55 7 chr3_random 3324233 3324379 -5103902 - HAL1 LINE L1 -1932 575 423 365 368 74 15 chr3_random 3324466 3324735 -5103546 - HAL1 LINE L1 -2218 289 5 329 264 81 52 chr3_random 3326517 3326691 -5101590 + MIR SINE MIR 72 250 -12 343 250 14 21 chr3_random 3328377 3328521 -5099760 + L1ME LINE L1 4971 5113 -1033 276 100 0 0 chr3_random 3328591 3328631 -5099650 + (CA)n Simple_repeat Simple_repeat 2 41 0 451 103 0 15 chr3_random 3328760 3328828 -5099453 - MSTA-int LTR MaLR -1584 67 1 1602 187 128 31 chr3_random 3328828 3329218 -5099063 - MSTA LTR MaLR 0 428 1 1531 193 23 20 chr3_random 3329515 3329886 -5098395 + L1ME LINE L1 5216 5588 -578 29 28 0 0 chr3_random 3329889 3329925 -5098356 + AT_rich Low_complexity Low_complexity 1 36 0 1667 174 28 3 chr3_random 3329931 3330219 -5098062 - AluJb SINE Alu -17 295 1 1942 125 0 0 chr3_random 3330239 3330534 -5097747 - L1PA7 LINE L1 -2 6152 5858 942 225 118 43 chr3_random 3330776 3331149 -5097132 + MER57A LTR ERV1 3 403 0 1992 147 131 13 chr3_random 3331367 3331748 -5096533 - MSTA LTR MaLR 0 428 3 7119 170 19 39 chr3_random 3331758 3333097 -5095184 - MSTA-int LTR MaLR -8 1572 261 2460 104 6 8 chr3_random 3534965 3535321 -4892960 + THE1A LTR MaLR 1 355 0 719 114 0 0 chr3_random 3535595 3535700 -4892581 + L1PA8 LINE L1 6066 6170 -2 959 151 9 3 chr3_random 3535807 3537049 -4891232 - BSR/Beta Satellite Satellite 0 1248 1 486 268 208 40 chr3_random 3537561 3537811 -4890470 + L1M4b LINE L1 644 935 -5924 226 205 0 0 chr3_random 3538087 3538126 -4890155 + L1M4b LINE L1 1178 1216 -5643 1710 218 14 8 chr3_random 3538260 3538623 -4889658 + MLT1A1 LTR MaLR 1 365 0 1084 258 53 71 chr3_random 3538707 3539264 -4889017 + L1M4b LINE L1 1205 1771 -5188 1861 153 0 10 chr3_random 3539264 3539552 -4888729 + AluSx SINE Alu 1 285 -27 1084 258 53 71 chr3_random 3539552 3539992 -4888289 + L1M4b LINE L1 1771 2165 -4794 225 65 0 0 chr3_random 3539992 3540023 -4888258 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1084 258 53 71 chr3_random 3540023 3540165 -4888116 + L1M4b LINE L1 2165 2308 -4651 789 287 84 37 chr3_random 3540169 3540524 -4887757 + MLT1A2 LTR MaLR 1 372 -2 2136 218 6 12 chr3_random 3540528 3541014 -4887267 + MLT1A2-int LTR MaLR 5 487 -884 240 35 0 0 chr3_random 3541363 3541392 -4886889 + (CA)n Simple_repeat Simple_repeat 2 30 0 388 156 0 0 chr3_random 3541493 3541557 -4886724 - L1 LINE L1 -1037 5109 5046 5727 27 1 3 chr3_random 3541574 3542251 -4886030 - L1PA4 LINE L1 -5 6150 5475 1932 43 0 0 chr3_random 3542251 3542482 -4885799 - L1PA3 LINE L1 0 6155 5921 14211 39 0 0 chr3_random 3542482 3544245 -4884036 + L1P LINE L1 2114 3876 -2270 2013 175 28 36 chr3_random 3546192 3546753 -4881528 + MLT2A2 LTR ERVL 1 554 0 443 248 161 7 chr3_random 3546949 3547086 -4881195 - MER45A DNA AcHobo -20 158 1 666 257 93 22 chr3_random 3547093 3547319 -4880962 - LTR16A1 LTR ERVL -2 455 214 236 273 26 0 chr3_random 3547363 3547440 -4880841 - LTR16A1 LTR ERVL -378 79 1 442 243 29 15 chr3_random 3548338 3548474 -4879807 + L1MB7 LINE L1 6038 6175 -9 456 305 59 17 chr3_random 3549379 3549615 -4878666 - MLT1J1 LTR MaLR -172 274 29 1166 202 44 101 chr3_random 3550520 3550907 -4877374 + MLT1A1 LTR MaLR 1 365 0 1888 136 7 0 chr3_random 3551356 3551629 -4876652 - AluSq SINE Alu -36 277 3 1945 140 3 7 chr3_random 3551633 3551945 -4876336 - AluSx SINE Alu 0 311 1 303 292 80 7 chr3_random 3553002 3553139 -4875142 + L1MD3 LINE L1 7846 7992 -3 336 132 0 0 chr3_random 3553355 3553408 -4874873 - Alu SINE Alu -1 301 249 30 27 0 0 chr3_random 3553973 3554010 -4874271 + AT_rich Low_complexity Low_complexity 1 37 0 211 167 33 50 chr3_random 3554556 3554616 -4873665 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 312 70 0 0 chr3_random 3554971 3555014 -4873267 + (TG)n Simple_repeat Simple_repeat 1 43 0 284 344 146 0 chr3_random 3555330 3555542 -4872739 - MIR SINE MIR -2 260 18 264 313 94 44 chr3_random 3555593 3555753 -4872528 - MIR SINE MIR -8 254 87 22 0 0 0 chr3_random 3556609 3556631 -4871650 + AT_rich Low_complexity Low_complexity 1 22 0 1696 203 0 3 chr3_random 3556692 3557003 -4871278 + AluJb SINE Alu 1 310 -2 257 170 75 0 chr3_random 3557985 3558038 -4870243 - MLT2B2 LTR ERVL 0 520 464 357 159 0 0 chr3_random 3558038 3558101 -4870180 + (TA)n Simple_repeat Simple_repeat 2 64 0 1666 208 74 46 chr3_random 3558102 3558563 -4869718 - MLT2B2 LTR ERVL -41 474 1 987 213 43 56 chr3_random 3558575 3558885 -4869396 - MLT1A1 LTR MaLR -60 314 4 708 251 35 143 chr3_random 3559385 3559848 -4868433 - LTR9 LTR ERV1 0 612 200 2117 99 3 7 chr3_random 3559886 3560188 -4868093 - AluSq SINE Alu -12 301 1 808 225 6 16 chr3_random 3560212 3560394 -4867887 - LTR9 LTR ERV1 -432 180 1 250 288 90 0 chr3_random 3561072 3561183 -4867098 - MERVL-B2 LTR ERVL -133 5352 5232 404 273 86 8 chr3_random 3561339 3561467 -4866814 - MERVL-B2 LTR ERVL -690 5074 4937 22 35 0 0 chr3_random 3561570 3561599 -4866682 + AT_rich Low_complexity Low_complexity 1 29 0 977 295 57 34 chr3_random 3561636 3562343 -4865938 - MERVL-B2 LTR ERVL -1142 4622 3933 222 37 0 0 chr3_random 3562343 3562370 -4865911 + (TA)n Simple_repeat Simple_repeat 1 27 0 977 295 57 34 chr3_random 3562370 3563083 -4865198 - MERVL-B2 LTR ERVL -1831 3933 3066 537 396 93 57 chr3_random 3564152 3564594 -4863687 - LTR46 LTR ERV1 -2 458 1 24 0 0 0 chr3_random 3565293 3565317 -4862964 + AT_rich Low_complexity Low_complexity 1 24 0 2164 105 0 36 chr3_random 3565589 3565895 -4862386 - AluSx SINE Alu -11 301 7 636 227 0 0 chr3_random 3566150 3566278 -4862003 - FLAM_A SINE Alu -9 133 6 248 367 17 17 chr3_random 3566610 3566730 -4861551 - MIR3 SINE MIR -38 170 51 224 293 0 0 chr3_random 3567113 3567171 -4861110 - MIR SINE MIR -11 251 194 251 330 135 48 chr3_random 3567825 3568446 -4859835 + L2 LINE L2 2592 3258 -55 1097 273 80 59 chr3_random 3568529 3569005 -4859276 + MLT1E LTR MaLR 90 575 -18 1941 164 77 35 chr3_random 3569005 3569520 -4858761 + MLT2A2 LTR ERVL 1 554 0 2089 95 103 8 chr3_random 3570743 3571110 -4857171 - LTR7 LTR ERV1 0 450 1 3672 116 4 14 chr3_random 3571110 3571673 -4856608 - HERVH LTR ERV1 0 7713 7157 2113 160 57 5 chr3_random 3571666 3572072 -4856209 - HERVH LTR ERV1 -1697 6016 5590 * 8743 112 4 47 chr3_random 3572063 3573459 -4854822 - HERVH LTR ERV1 -2564 5149 3813 2778 154 0 0 chr3_random 3573458 3573906 -4854375 - HERVH LTR ERV1 -4126 3587 3140 * 13135 135 2 23 chr3_random 3573885 3576056 -4852225 - HERVH LTR ERV1 -4718 2995 870 1428 248 87 30 chr3_random 3576494 3576933 -4851348 + MLT2B1 LTR ERVL 1 464 -56 330 300 42 0 chr3_random 3576964 3577084 -4851197 + L1M2 LINE L1 13 137 -6712 6478 254 33 11 chr3_random 3577535 3580459 -4847822 + L1PA13 LINE L1 1509 4503 -2294 23 0 0 0 chr3_random 3580461 3580484 -4847797 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3_random 3580786 3580809 -4847472 + AT_rich Low_complexity Low_complexity 1 23 0 2411 81 0 0 chr3_random 3580893 3581188 -4847093 + AluY SINE Alu 1 295 -16 182 345 51 56 chr3_random 3581558 3581755 -4846526 + L2 LINE L2 2686 2881 -433 34 42 0 0 chr3_random 3581772 3581820 -4846461 + AT_rich Low_complexity Low_complexity 1 48 0 523 242 16 18 chr3_random 3582042 3582269 -4846012 + MER34 LTR ERV1 1 267 -377 313 242 50 26 chr3_random 3582301 3582432 -4845849 + LTR48 LTR ERV1 382 508 -136 274 218 59 50 chr3_random 3582434 3582535 -4845746 + LTR49 LTR ERV1 494 595 0 1333 263 37 6 chr3_random 3583360 3583714 -4844567 + MLT1A1 LTR MaLR 1 365 0 1062 278 76 90 chr3_random 3583894 3584737 -4843544 - L1MCb LINE L1 -5212 833 3 2106 126 3 25 chr3_random 3584887 3585205 -4843076 + AluSx SINE Alu 1 311 -1 463 280 45 55 chr3_random 3585298 3585719 -4842562 + L1MDb LINE L1 1056 1472 -5071 616 224 44 68 chr3_random 3585723 3586017 -4842264 + L1MDb LINE L1 1383 1669 -4871 1476 212 86 32 chr3_random 3586039 3586569 -4841712 + MLT2A2 LTR ERVL 1 546 -8 847 251 45 54 chr3_random 3586573 3586984 -4841297 + L1MDb LINE L1 1690 2063 -4477 307 198 58 23 chr3_random 3587043 3587129 -4841152 + L1MC4 LINE L1 6614 6702 -1340 30 27 0 0 chr3_random 3587355 3587392 -4840889 + AT_rich Low_complexity Low_complexity 1 37 0 301 154 70 49 chr3_random 3587462 3587605 -4840676 + (TTAA)n Simple_repeat Simple_repeat 3 148 0 562 276 49 12 chr3_random 3587611 3587857 -4840424 + L1MDb LINE L1 2829 3083 -3457 860 275 180 16 chr3_random 3587914 3588320 -4839961 + L1MDb LINE L1 3179 3517 -3023 2025 108 0 14 chr3_random 3588320 3588616 -4839665 + AluSc SINE Alu 1 292 -17 860 275 180 16 chr3_random 3588616 3588831 -4839450 + L1MDb LINE L1 3517 3902 -2638 30 45 0 0 chr3_random 3590523 3590567 -4837714 + AT_rich Low_complexity Low_complexity 1 44 0 2076 102 6 29 chr3_random 3590841 3591154 -4837127 - AluSx SINE Alu -6 306 1 228 272 120 0 chr3_random 3591787 3591879 -4836402 + Charlie8 DNA MER1_type 124 226 -2191 183 80 0 0 chr3_random 3593142 3593167 -4835114 + (T)n Simple_repeat Simple_repeat 1 25 0 342 344 98 8 chr3_random 3593958 3594080 -4834201 - L2 LINE L2 0 3272 3140 1357 206 58 30 chr3_random 3594700 3595065 -4833216 + THE1C LTR MaLR 1 375 0 221 344 160 20 chr3_random 3595123 3595367 -4832914 - L2 LINE L2 -559 2755 2478 805 144 25 74 chr3_random 3598151 3598353 -4829928 + L1MA8 LINE L1 6087 6278 -13 27 29 0 0 chr3_random 3598474 3598508 -4829773 + AT_rich Low_complexity Low_complexity 1 34 0 426 338 59 45 chr3_random 3598677 3599035 -4829246 - L3b LINE CR1 -87 1496 1134 2059 136 3 0 chr3_random 3599088 3599383 -4828898 + AluSx SINE Alu 1 296 -16 228 224 0 17 chr3_random 3599679 3599737 -4828544 + GA-rich Low_complexity Low_complexity 3 59 0 2155 252 52 42 chr3_random 3600247 3601203 -4827078 - L1ME1 LINE L1 -24 6142 5188 1422 249 67 46 chr3_random 3601416 3601893 -4826388 - MLT1D LTR MaLR -18 487 1 223 262 16 0 chr3_random 3602229 3602290 -4825991 + CT-rich Low_complexity Low_complexity 3 64 0 27 87 0 0 chr3_random 3602803 3602872 -4825409 + AT_rich Low_complexity Low_complexity 1 69 0 24 0 0 0 chr3_random 3603714 3603738 -4824543 + AT_rich Low_complexity Low_complexity 1 24 0 225 243 0 43 chr3_random 3604434 3604504 -4823777 + MIR SINE MIR 89 155 -107 219 204 0 0 chr3_random 3605363 3605412 -4822869 + GA-rich Low_complexity Low_complexity 2 50 0 1861 158 10 3 chr3_random 3605512 3605816 -4822465 + AluSx SINE Alu 5 310 -2 192 270 16 0 chr3_random 3606488 3606551 -4821730 + L2 LINE L2 1906 1969 -1345 422 314 199 25 chr3_random 3607148 3607549 -4820732 + L2 LINE L2 2238 2708 -606 542 301 138 0 chr3_random 3608660 3608863 -4819418 + MIR SINE MIR 4 234 -28 1350 276 14 0 chr3_random 3609644 3610007 -4818274 - HsTC2 DNA Tc2 -1076 822 455 770 311 134 18 chr3_random 3610305 3610701 -4817580 - MLT1J LTR MaLR -69 442 1 623 159 0 0 chr3_random 3610875 3610988 -4817293 - L1MA1 LINE L1 0 6302 6190 2025 217 75 7 chr3_random 3611027 3611464 -4816817 + MER70A LTR ERVL 6 472 0 203 298 0 0 chr3_random 3611479 3611536 -4816745 + L2 LINE L2 3251 3307 -6 622 212 151 60 chr3_random 3611885 3612315 -4815966 + L1MC5 LINE L1 7249 7717 -244 2586 263 48 16 chr3_random 3612326 3613029 -4815252 - ERVL-B1 LTR ERVL -5037 727 2 1704 239 106 6 chr3_random 3613030 3613503 -4814778 - MLT2B1 LTR ERVL 0 520 1 772 251 186 99 chr3_random 3613963 3614511 -4813770 + MLT1E1 LTR MaLR 1 567 -26 1405 251 30 6 chr3_random 3614666 3615001 -4813280 + MER2 DNA MER2_type 2 344 0 4054 242 34 31 chr3_random 3615025 3615186 -4813095 + L1M1 LINE L1 10 169 -7396 2359 39 0 0 chr3_random 3615186 3615465 -4812816 + AluY SINE Alu 1 279 -32 279 0 0 0 chr3_random 3615465 3615496 -4812785 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4054 242 34 31 chr3_random 3615496 3616721 -4811560 + L1M1 LINE L1 169 1389 -6176 1337 222 14 25 chr3_random 3616721 3617005 -4811276 + AluJo SINE Alu 2 282 -30 180 0 0 0 chr3_random 3617008 3617028 -4811253 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4054 242 34 31 chr3_random 3617028 3617078 -4811203 + L1M1 LINE L1 1390 2129 -5436 21 57 0 0 chr3_random 3617085 3617120 -4811161 + AT_rich Low_complexity Low_complexity 1 35 0 1684 177 7 7 chr3_random 3617218 3617523 -4810758 + AluSx SINE Alu 1 305 -7 542 261 62 36 chr3_random 3619104 3619299 -4808982 + MIR SINE MIR 20 219 -43 1606 194 3 0 chr3_random 3621098 3621443 -4806838 - AluJb SINE Alu 0 312 1 1481 204 43 123 chr3_random 3621538 3622137 -4806144 - L1MC3 LINE L1 -557 7228 6678 10061 211 33 90 chr3_random 3622179 3624144 -4804137 + L1MA4A LINE L1 2 2078 -4927 231 36 0 0 chr3_random 3624144 3624172 -4804109 + (CA)n Simple_repeat Simple_repeat 1 28 0 10061 211 33 90 chr3_random 3624172 3624503 -4803778 + L1MA4A LINE L1 2078 2426 -4579 279 0 0 0 chr3_random 3624503 3624534 -4803747 + (CA)n Simple_repeat Simple_repeat 2 32 0 10061 211 33 90 chr3_random 3624534 3624959 -4803322 + L1MA4A LINE L1 2426 2874 -4131 2507 56 0 0 chr3_random 3624959 3625265 -4803016 + AluY SINE Alu 1 306 -5 10061 211 33 90 chr3_random 3625265 3628282 -4799999 + L1MA4A LINE L1 2874 5459 -1546 1666 111 0 8 chr3_random 3628282 3628517 -4799764 - THE1B LTR MaLR 0 364 132 10061 211 33 90 chr3_random 3628517 3629976 -4798305 + L1MA4A LINE L1 5459 7000 -5 1395 163 23 8 chr3_random 3629978 3630236 -4798045 - L1MC3 LINE L1 -1132 6653 6392 * 1555 203 171 11 chr3_random 3630230 3630399 -4797882 + L1MC3 LINE L1 7261 7402 -383 1677 95 4 42 chr3_random 3630399 3630661 -4797620 + L1PA13 LINE L1 5912 6163 0 1555 203 171 11 chr3_random 3630661 3630924 -4797357 + L1MC3 LINE L1 7402 7762 -23 1559 237 66 86 chr3_random 3631378 3631819 -4796462 - MLT1E1 LTR MaLR 0 654 229 2394 174 17 2 chr3_random 3631819 3632239 -4796042 - MSTB LTR MaLR 0 426 1 1559 237 66 86 chr3_random 3632239 3632464 -4795817 - MLT1E1 LTR MaLR -425 229 1 309 354 6 37 chr3_random 3632569 3632730 -4795551 - MIR SINE MIR -93 169 14 3207 281 102 45 chr3_random 3633081 3635149 -4793132 - L1MC4a LINE L1 -120 7688 5504 2116 174 54 17 chr3_random 3635264 3635671 -4792610 - MSTB LTR MaLR -1 425 4 7363 209 52 11 chr3_random 3635680 3637260 -4791021 - MSTB-int LTR MaLR -6 1645 1 838 161 6 37 chr3_random 3637260 3637421 -4790860 - MSTB LTR MaLR 0 432 277 21 57 0 0 chr3_random 3637588 3637623 -4790658 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3_random 3638377 3638401 -4789880 + AT_rich Low_complexity Low_complexity 1 24 0 321 88 0 35 chr3_random 3641183 3641240 -4787041 - L1PA15 LINE L1 -1 6815 6761 251 118 0 0 chr3_random 3641242 3641276 -4787005 + L1PA15 LINE L1 6056 6089 -76 10562 207 15 29 chr3_random 3641326 3644521 -4783760 - L1PA15 LINE L1 -76 6740 3481 3872 109 137 130 chr3_random 3644524 3645905 -4782376 - pTR5 LTR ERV1 0 2438 741 4660 253 32 7 chr3_random 3645905 3647473 -4780808 - L1PA15 LINE L1 -3314 3483 1889 5192 66 36 0 chr3_random 3647494 3648191 -4780090 - LTR30 LTR ERV1 0 722 1 6065 129 18 3 chr3_random 3648191 3649092 -4779189 - HERV30 LTR ERV1 0 8257 7344 * 25836 93 3 3 chr3_random 3649085 3652548 -4775733 - HERV30 LTR ERV1 -4795 3462 1 5056 70 39 6 chr3_random 3652548 3653247 -4775034 - LTR30 LTR ERV1 0 722 1 703 270 0 0 chr3_random 3653247 3653399 -4774882 - L1PA15 LINE L1 -4926 1861 1710 28 61 0 0 chr3_random 3653499 3653548 -4774733 + AT_rich Low_complexity Low_complexity 1 49 0 425 337 75 47 chr3_random 3654172 3654531 -4773750 - L2 LINE L2 -799 2515 2147 231 239 149 0 chr3_random 3654542 3654609 -4773672 + Tigger7 DNA MER2_type 2410 2486 -1 1109 200 36 13 chr3_random 3655397 3655745 -4772536 + LTR24C LTR ERV1 233 635 0 1606 201 34 34 chr3_random 3656004 3656417 -4771864 + L1MA9 LINE L1 5900 6312 0 423 287 48 71 chr3_random 3656484 3656723 -4771558 + L1MEc LINE L1 959 1202 -5194 2100 142 0 0 chr3_random 3656723 3657033 -4771248 + AluSx SINE Alu 3 312 0 423 287 48 71 chr3_random 3657033 3657494 -4770787 + L1MEc LINE L1 1202 1643 -4753 * 701 338 30 16 chr3_random 3657464 3657834 -4770447 + L1MEc LINE L1 10 384 -6012 248 353 96 24 chr3_random 3657870 3658119 -4770162 - L2 LINE L2 -737 2577 2311 2408 133 17 8 chr3_random 3658143 3658504 -4769777 + THE1B LTR MaLR 1 364 0 794 274 68 53 chr3_random 3658568 3659137 -4769144 + L1M4 LINE L1 3322 3899 -2247 1143 121 11 6 chr3_random 3659969 3660143 -4768138 - AluSx SINE Alu -125 187 13 1269 165 107 74 chr3_random 3660541 3660719 -4767562 + THE1C LTR MaLR 1 172 -203 387 0 0 0 chr3_random 3660719 3660762 -4767519 + (TC)n Simple_repeat Simple_repeat 1 43 0 1269 165 107 74 chr3_random 3660762 3660946 -4767335 + THE1C LTR MaLR 172 375 0 307 317 59 38 chr3_random 3660946 3661132 -4767149 + L1ME LINE L1 5646 5835 -286 845 258 85 14 chr3_random 3661507 3661802 -4766479 - MSTD LTR MaLR -12 353 41 22 0 0 0 chr3_random 3662841 3662863 -4765418 + AT_rich Low_complexity Low_complexity 1 22 0 2100 156 46 43 chr3_random 3663439 3663855 -4764426 + MSTB1 LTR MaLR 1 417 -15 5943 169 28 53 chr3_random 3663939 3665172 -4763109 - Tigger2 DNA MER2_type -1 2717 1516 608 238 0 35 chr3_random 3665172 3665315 -4762966 + AluJb SINE Alu 153 290 -22 8236 177 21 5 chr3_random 3665343 3666842 -4761439 - Tigger2 DNA MER2_type -1196 1522 1 1035 129 181 174 chr3_random 3666919 3667344 -4760937 + MSTA LTR MaLR 1 428 0 7976 163 45 40 chr3_random 3667346 3668914 -4759367 + MSTA-int LTR MaLR 3 1579 -1 1599 156 207 11 chr3_random 3668915 3669273 -4759008 + MSTA LTR MaLR 1 428 0 2316 79 0 25 chr3_random 3672343 3672660 -4755621 + AluY SINE Alu 1 309 -2 2498 43 0 10 chr3_random 3673306 3673607 -4754674 - AluY SINE Alu -11 300 3 544 328 35 37 chr3_random 3674219 3674704 -4753577 + L1ME1 LINE L1 31 514 -5882 686 57 0 0 chr3_random 3674731 3674819 -4753462 - AluY SINE Alu -8 303 216 370 329 48 35 chr3_random 3674882 3675113 -4753168 + L1ME1 LINE L1 621 854 -5542 2510 287 86 68 chr3_random 3675219 3676919 -4751362 + L1ME1 LINE L1 2945 4698 -1517 5413 32 1 0 chr3_random 3676919 3677567 -4750714 + L1PA4 LINE L1 5507 6155 0 2510 287 86 68 chr3_random 3677567 3678169 -4750112 + L1ME1 LINE L1 4698 5288 -927 405 0 0 0 chr3_random 3678185 3678230 -4750051 + (CA)n Simple_repeat Simple_repeat 1 45 0 1363 191 96 62 chr3_random 3678230 3678617 -4749664 - MLT2D LTR ERVL -14 400 1 942 261 55 33 chr3_random 3678618 3679013 -4749268 + L1ME1 LINE L1 5305 5707 -528 4568 169 46 6 chr3_random 3679018 3679909 -4748372 + L1PA16 LINE L1 5230 6157 -9 1039 238 53 92 chr3_random 3679930 3680403 -4747878 + L1ME1 LINE L1 5756 6206 -27 21 0 0 0 chr3_random 3682213 3682234 -4746047 + AT_rich Low_complexity Low_complexity 1 21 0 405 271 99 42 chr3_random 3682930 3683280 -4745001 - L1ME3A LINE L1 -134 6036 5665 22 0 0 0 chr3_random 3683580 3683602 -4744679 + AT_rich Low_complexity Low_complexity 1 22 0 1229 312 28 19 chr3_random 3684536 3685071 -4743210 - MLT1F LTR MaLR -2 540 1 2106 178 101 25 chr3_random 3685089 3685140 -4743141 - MLT2B2 LTR ERVL 0 515 469 498 17 0 0 chr3_random 3685140 3685199 -4743082 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2106 178 101 25 chr3_random 3685199 3685624 -4742657 - MLT2B2 LTR ERVL -46 469 3 1786 165 42 9 chr3_random 3685753 3686087 -4742194 + MER7A DNA MER2_type 2 344 -2 2211 164 20 12 chr3_random 3687648 3688208 -4740073 + L1PBa LINE L1 2382 3006 -3856 * 2775 217 7 37 chr3_random 3688205 3688956 -4739325 + L1 LINE L1 4195 4922 -1224 253 313 166 6 chr3_random 3739106 3739269 -4689012 - MIR SINE MIR -7 255 67 2308 112 0 0 chr3_random 3740351 3740664 -4687617 - AluSp SINE Alu 0 313 1 469 301 42 14 chr3_random 3740681 3740824 -4687457 + MIR SINE MIR 96 242 -20 195 100 0 0 chr3_random 3741028 3741058 -4687223 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr3_random 3741260 3741288 -4686993 + AT_rich Low_complexity Low_complexity 1 28 0 261 70 53 35 chr3_random 3741401 3741458 -4686823 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1947 109 11 0 chr3_random 3741864 3742165 -4686116 + AluSc SINE Alu 14 317 0 444 255 29 101 chr3_random 3742169 3742377 -4685904 + MLT1E2 LTR MaLR 207 399 -227 3676 31 7 7 chr3_random 3742377 3742869 -4685412 + L1PA4 LINE L1 5702 6193 0 1212 130 5 0 chr3_random 3743021 3743205 -4685076 + AluSp SINE Alu 116 300 -13 188 390 18 18 chr3_random 3743317 3743486 -4684795 - L2 LINE L2 -1270 2044 1876 1728 216 3 11 chr3_random 3743488 3743853 -4684428 + MLT1A1 LTR MaLR 4 365 0 1169 245 26 23 chr3_random 3743875 3744185 -4684096 + MLT2C1 LTR ERVL 1 311 -86 324 0 0 0 chr3_random 3744228 3744264 -4684017 + (CA)n Simple_repeat Simple_repeat 2 37 0 2124 201 10 2 chr3_random 3744280 3744693 -4683588 + Tigger3b DNA MER2_type 1 416 -815 260 27 27 0 chr3_random 3744898 3744935 -4683346 + (TG)n Simple_repeat Simple_repeat 2 39 0 328 389 32 23 chr3_random 3744942 3745158 -4683123 - L2 LINE L2 -2897 417 200 21 36 0 0 chr3_random 3745347 3745375 -4682906 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3_random 3745711 3745739 -4682542 + AT_rich Low_complexity Low_complexity 1 28 0 729 50 20 0 chr3_random 3746862 3746961 -4681320 - AluY SINE Alu -14 297 197 1703 75 38 0 chr3_random 3747848 3748087 -4680194 + L1MA1 LINE L1 6055 6302 0 412 186 0 0 chr3_random 3748592 3748662 -4679619 + MLT2B2 LTR ERVL 1 70 -450 231 156 62 0 chr3_random 3748733 3748797 -4679484 + (TA)n Simple_repeat Simple_repeat 2 69 0 1712 163 96 14 chr3_random 3748799 3749143 -4679138 + L1PB4 LINE L1 5776 6147 -9 1363 207 12 62 chr3_random 3749150 3749488 -4678793 + MLT2B2 LTR ERVL 60 380 -135 322 361 133 22 chr3_random 3749566 3750076 -4678205 - L2 LINE L2 -574 2740 2174 1117 199 24 0 chr3_random 3750184 3750390 -4677891 + Tigger3(Golem) DNA MER2_type 2817 3027 -2 354 61 0 0 chr3_random 3750402 3750451 -4677830 + (CA)n Simple_repeat Simple_repeat 2 50 0 189 369 10 87 chr3_random 3750721 3750916 -4677365 - L2 LINE L2 -1830 1484 1305 261 228 283 18 chr3_random 3752320 3752539 -4675742 + L1MC4a LINE L1 5634 5910 -1898 1828 175 9 15 chr3_random 3752544 3752882 -4675399 + MER2 DNA MER2_type 2 337 -8 27 0 0 0 chr3_random 3754796 3754823 -4673458 + AT_rich Low_complexity Low_complexity 1 27 0 291 241 38 25 chr3_random 3755151 3755230 -4673051 + MER20 DNA MER1_type 1 80 -139 1487 236 33 64 chr3_random 3755245 3755717 -4672564 + MER31B LTR ERV1 1 508 -6 546 203 85 0 chr3_random 3755754 3755872 -4672409 + MER20 DNA MER1_type 91 218 -1 245 247 156 26 chr3_random 3757035 3757112 -4671169 + LTR33 LTR ERVL 368 454 -67 27 29 0 0 chr3_random 3757866 3757900 -4670381 + AT_rich Low_complexity Low_complexity 1 34 0 274 278 9 28 chr3_random 3758334 3758442 -4669839 + LTR67 LTR ERVL 435 540 -17 226 219 47 31 chr3_random 3760700 3760764 -4667517 - L2 LINE L2 -8 3264 3200 425 96 0 27 chr3_random 3761056 3761129 -4667152 + L1PA8 LINE L1 6097 6167 -5 2151 114 3 0 chr3_random 3761429 3761719 -4666562 - AluSg SINE Alu -19 291 1 3904 102 10 82 chr3_random 3762050 3762171 -4666110 + MER4A LTR ERV1 2 130 -534 486 0 0 0 chr3_random 3762171 3762225 -4666056 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 3904 102 10 82 chr3_random 3762225 3762818 -4665463 + MER4A LTR ERV1 130 664 0 21 0 0 0 chr3_random 3765162 3765183 -4663098 + AT_rich Low_complexity Low_complexity 1 21 0 3671 206 34 107 chr3_random 3765339 3765470 -4662811 - L1MA9 LINE L1 -38 6274 6135 507 45 0 0 chr3_random 3765470 3765536 -4662745 + (TG)n Simple_repeat Simple_repeat 2 67 0 3671 206 34 107 chr3_random 3765536 3766867 -4661414 - L1MA9 LINE L1 -177 6135 4953 2009 131 0 0 chr3_random 3766867 3767157 -4661124 + AluSx SINE Alu 1 290 -22 3671 206 34 107 chr3_random 3767157 3767353 -4660928 - L1MA9 LINE L1 -1359 4953 4744 27 49 0 0 chr3_random 3767834 3767875 -4660406 + AT_rich Low_complexity Low_complexity 1 41 0 18694 162 11 7 chr3_random 3768215 3771578 -4656703 + L1M2 LINE L1 2428 5901 -947 1066 112 17 11 chr3_random 3771580 3771758 -4656523 + L1PA10 LINE L1 5985 6163 -5 1278 243 24 0 chr3_random 3771878 3772174 -4656107 - AluJb SINE Alu -9 303 1 1834 144 32 0 chr3_random 3772267 3772597 -4655684 + AluSx SINE Alu 1 312 0 632 191 21 101 chr3_random 3772672 3772817 -4655464 - L1ME LINE L1 -417 5749 5619 1479 180 67 0 chr3_random 3772817 3773112 -4655169 - AluJb SINE Alu 0 321 10 632 191 21 101 chr3_random 3773112 3773153 -4655128 - L1ME LINE L1 -547 5619 5576 527 167 31 7 chr3_random 3773158 3773281 -4655000 - MSTB1 LTR MaLR 0 432 267 37 0 0 0 chr3_random 3773752 3773789 -4654492 + AT_rich Low_complexity Low_complexity 1 37 0 250 384 35 20 chr3_random 3773958 3774156 -4654125 - L2 LINE L2 -955 2359 2159 2025 118 0 4 chr3_random 3775178 3775487 -4652794 + AluSg1 SINE Alu 1 308 0 22 0 0 0 chr3_random 3776231 3776253 -4652028 + AT_rich Low_complexity Low_complexity 1 22 0 299 292 18 64 chr3_random 3776378 3776549 -4651732 - MIR SINE MIR -50 212 50 210 37 0 0 chr3_random 3776685 3776712 -4651569 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1420 84 21 5 chr3_random 3776714 3776904 -4651377 - AluSc SINE Alu -31 278 86 288 298 0 19 chr3_random 3777202 3777306 -4650975 - MLT1L LTR MaLR -348 267 166 21 89 0 0 chr3_random 3778491 3778547 -4649734 + AT_rich Low_complexity Low_complexity 1 56 0 513 348 56 76 chr3_random 3779121 3779833 -4648448 + L1MEd LINE L1 326 1023 -5096 2465 171 25 21 chr3_random 3780391 3780864 -4647417 + MER50 LTR ERV1 1 475 -259 1282 209 0 39 chr3_random 3780860 3781143 -4647138 + MER50 LTR ERV1 440 711 -23 * 1267 218 24 16 chr3_random 3781148 3781400 -4646881 + MLT1B LTR MaLR 137 390 0 1586 132 28 20 chr3_random 3782447 3782762 -4645519 + THE1C LTR MaLR 1 373 -2 270 316 0 58 chr3_random 3782774 3782929 -4645352 + ERVL LTR ERVL 4750 4895 -869 946 241 0 31 chr3_random 3782932 3783160 -4645121 + MER58A DNA MER1_type 3 223 -1 266 306 37 31 chr3_random 3783475 3783636 -4644645 + ERVL LTR ERVL 5184 5344 -141 380 345 41 0 chr3_random 3784248 3784393 -4643888 + LTR67 LTR ERVL 113 263 -294 252 149 0 0 chr3_random 3785301 3785348 -4642933 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr3_random 3785414 3785437 -4642844 + AT_rich Low_complexity Low_complexity 1 23 0 1497 214 3 13 chr3_random 3785501 3785809 -4642472 - AluJo SINE Alu -7 305 1 22 56 0 0 chr3_random 3785923 3785959 -4642322 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr3_random 3786002 3786033 -4642248 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr3_random 3786820 3786844 -4641437 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3_random 3786878 3786902 -4641379 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1021 205 27 126 chr3_random 3786987 3787036 -4641245 - MLT1A1 LTR MaLR 0 365 313 1601 117 30 0 chr3_random 3787036 3787267 -4641014 - AluSg1 SINE Alu -16 293 56 1021 205 27 126 chr3_random 3787267 3787622 -4640659 - MLT1A1 LTR MaLR -52 313 1 941 253 48 0 chr3_random 3788338 3788587 -4639694 + LTR43 LTR ERV1 176 436 -166 226 87 43 0 chr3_random 3788708 3788754 -4639527 + (CAA)n Simple_repeat Simple_repeat 2 49 0 771 235 72 66 chr3_random 3789210 3789529 -4638752 + MLT1C LTR MaLR 53 373 -94 39 0 0 0 chr3_random 3789675 3789714 -4638567 + AT_rich Low_complexity Low_complexity 1 39 0 262 75 25 0 chr3_random 3790059 3790099 -4638182 - AluSc SINE Alu -72 227 187 24 0 0 0 chr3_random 3790330 3790354 -4637927 + AT_rich Low_complexity Low_complexity 1 24 0 1129 189 0 5 chr3_random 3790451 3790642 -4637639 - AluSx SINE Alu -122 190 1 21 0 0 0 chr3_random 3791003 3791024 -4637257 + AT_rich Low_complexity Low_complexity 1 21 0 572 333 29 0 chr3_random 3791281 3791485 -4636796 + MIR SINE MIR 11 220 -42 39 22 0 0 chr3_random 3791961 3792007 -4636274 + AT_rich Low_complexity Low_complexity 1 46 0 583 235 60 7 chr3_random 3792222 3792371 -4635910 + L1ME1 LINE L1 6002 6158 -8 1671 178 7 3 chr3_random 3793599 3793892 -4634389 - AluJo SINE Alu -6 306 13 405 0 0 0 chr3_random 3794560 3794605 -4633676 + (CA)n Simple_repeat Simple_repeat 2 46 0 26 0 0 0 chr3_random 3795121 3795147 -4633134 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr3_random 3795166 3795202 -4633079 + AT_rich Low_complexity Low_complexity 1 36 0 1258 177 0 4 chr3_random 3795869 3796095 -4632186 - AluSx SINE Alu -87 225 1 401 236 27 27 chr3_random 3796133 3796281 -4632000 - L1M4 LINE L1 -3478 2668 2521 261 70 53 35 chr3_random 3796353 3796410 -4631871 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 21 36 0 0 chr3_random 3796523 3796551 -4631730 + AT_rich Low_complexity Low_complexity 1 28 0 195 100 0 0 chr3_random 3796753 3796783 -4631498 + (TG)n Simple_repeat Simple_repeat 1 30 0 505 339 38 30 chr3_random 3796987 3797147 -4631134 - MIR SINE MIR -20 242 78 1445 236 0 0 chr3_random 3797147 3797460 -4630821 + AluSp SINE Alu 1 313 0 505 339 38 30 chr3_random 3797460 3797535 -4630746 - MIR SINE MIR -184 78 5 26 30 0 0 chr3_random 3798076 3798109 -4630172 + AT_rich Low_complexity Low_complexity 1 33 0 351 0 0 0 chr3_random 3800603 3800642 -4627639 + (TG)n Simple_repeat Simple_repeat 2 40 0 657 197 0 16 chr3_random 3800771 3800893 -4627388 + AluJb SINE Alu 192 311 -1 188 217 50 50 chr3_random 3801564 3801624 -4626657 + MIR SINE MIR 94 153 -109 527 214 186 7 chr3_random 3802862 3803007 -4625274 - MER58B DNA MER1_type -1 340 170 23 0 0 0 chr3_random 3803295 3803318 -4624963 + AT_rich Low_complexity Low_complexity 1 23 0 2086 89 30 20 chr3_random 3803337 3803640 -4624641 - AluSg SINE Alu -4 306 1 21 0 0 0 chr3_random 3804601 3804622 -4623659 + AT_rich Low_complexity Low_complexity 1 21 0 661 156 55 0 chr3_random 3804973 3805101 -4623180 - L1PA15 LINE L1 -9 6156 6022 324 259 224 11 chr3_random 3805479 3805653 -4622628 - L2 LINE L2 -901 2413 2203 22 0 0 0 chr3_random 3805898 3805920 -4622361 + AT_rich Low_complexity Low_complexity 1 22 0 378 16 16 33 chr3_random 3806014 3806075 -4622206 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1809 145 11 0 chr3_random 3806079 3806361 -4621920 - AluSq SINE Alu -28 285 1 22 70 0 0 chr3_random 3806446 3806489 -4621792 + AT_rich Low_complexity Low_complexity 1 43 0 195 322 17 0 chr3_random 3807145 3807204 -4621077 + MIR SINE MIR 189 248 -14 40 21 0 0 chr3_random 3807212 3807259 -4621022 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr3_random 3808194 3808218 -4620063 + AT_rich Low_complexity Low_complexity 1 24 0 224 244 0 0 chr3_random 3808649 3808690 -4619591 + L2 LINE L2 3241 3281 -32 22 0 0 0 chr3_random 3808765 3808787 -4619494 + AT_rich Low_complexity Low_complexity 1 22 0 1250 145 83 17 chr3_random 3809148 3809445 -4618836 + THE1B LTR MaLR 1 364 0 1142 172 69 140 chr3_random 3809598 3810005 -4618276 + MER51A LTR ERV1 257 634 0 377 279 135 33 chr3_random 3810207 3810739 -4617542 + L1ME LINE L1 786 1368 -4712 456 283 44 13 chr3_random 3811378 3811537 -4616744 - L1ME LINE L1 -5880 190 27 222 237 34 17 chr3_random 3812203 3812262 -4616019 + L2 LINE L2 3213 3272 0 22 70 0 0 chr3_random 3813628 3813671 -4614610 + AT_rich Low_complexity Low_complexity 1 43 0 2179 98 3 0 chr3_random 3813754 3814050 -4614231 + AluSg SINE Alu 1 297 -13 397 338 67 49 chr3_random 3814345 3814733 -4613548 - L1MEc LINE L1 -2634 3581 3187 389 304 89 30 chr3_random 3815043 3815405 -4612876 - L1MEc LINE L1 -3965 2273 1901 718 194 25 12 chr3_random 3815997 3816157 -4612124 - MER96B DNA MER1_type? -245 172 11 22 56 0 0 chr3_random 3816253 3816289 -4611992 + AT_rich Low_complexity Low_complexity 1 36 0 288 0 0 0 chr3_random 3816354 3816386 -4611895 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 26 30 0 0 chr3_random 3816667 3816700 -4611581 + AT_rich Low_complexity Low_complexity 1 33 0 2339 52 0 26 chr3_random 3816929 3817235 -4611046 - AluY SINE Alu -13 298 1 22 56 0 0 chr3_random 3818370 3818406 -4609875 + AT_rich Low_complexity Low_complexity 1 36 0 1238 269 20 20 chr3_random 3818530 3818984 -4609297 + L1MC2 LINE L1 4212 4665 -1481 4492 194 84 6 chr3_random 3819015 3819987 -4608294 + L1MC2 LINE L1 5273 6320 -24 209 93 47 23 chr3_random 3819999 3820042 -4608239 + A-rich Low_complexity Low_complexity 2 45 0 632 329 64 59 chr3_random 3820568 3821006 -4607275 + L3 LINE CR1 19 458 -1119 242 294 18 83 chr3_random 3821123 3821232 -4607049 - MER5A DNA MER1_type -1 188 87 765 281 118 3 chr3_random 3821478 3821774 -4606507 + L2 LINE L2 2672 3005 -308 373 226 86 11 chr3_random 3821807 3821900 -4606381 + L2 LINE L2 3214 3313 0 3189 213 43 57 chr3_random 3822298 3823520 -4604761 + L1MB7 LINE L1 4901 6112 -72 928 114 0 0 chr3_random 3823520 3823651 -4604630 - FLAM_C SINE Alu -2 131 1 3189 213 43 57 chr3_random 3823651 3823715 -4604566 + L1MB7 LINE L1 6112 6175 -9 21 36 0 0 chr3_random 3824629 3824657 -4603624 + AT_rich Low_complexity Low_complexity 1 28 0 34 24 0 0 chr3_random 3824680 3824721 -4603560 + AT_rich Low_complexity Low_complexity 1 41 0 45 45 0 0 chr3_random 3824919 3824985 -4603296 + AT_rich Low_complexity Low_complexity 1 66 0 1509 181 11 3 chr3_random 3825384 3825711 -4602570 + AluJo SINE Alu 5 312 0 644 259 42 0 chr3_random 3825939 3826105 -4602176 + MER20 DNA MER1_type 42 214 -5 453 267 12 43 chr3_random 3826354 3826515 -4601766 + L2 LINE L2 2362 2517 -797 196 312 83 103 chr3_random 3826613 3826866 -4601415 + L2 LINE L2 2534 2781 -533 2688 183 21 14 chr3_random 3826869 3827428 -4600853 + L1MC1 LINE L1 5343 5905 -439 1637 171 84 3 chr3_random 3827435 3827769 -4600512 - MER46B DNA MER2_type 0 236 1 1520 209 72 14 chr3_random 3827770 3828129 -4600152 - MLT1B LTR MaLR -6 384 5 2098 210 9 0 chr3_random 3828133 3828562 -4599719 + L1MC1 LINE L1 5899 6331 -2 1311 229 44 71 chr3_random 3828634 3829111 -4599170 - MLT1C LTR MaLR -3 464 1 421 318 144 42 chr3_random 3829112 3829400 -4598881 + L2 LINE L2 2785 3092 -221 1233 166 4 8 chr3_random 3830746 3830981 -4597300 + L1MA4 LINE L1 6066 6299 -1 57 47 0 0 chr3_random 3832267 3832352 -4595929 + AT_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr3_random 3832513 3832535 -4595746 + AT_rich Low_complexity Low_complexity 1 22 0 242 328 0 0 chr3_random 3832910 3832968 -4595313 + L2 LINE L2 3205 3262 -10 264 273 116 33 chr3_random 3833031 3833152 -4595129 + MIR SINE MIR 16 146 -62 434 299 52 0 chr3_random 3833587 3833741 -4594540 + MIR SINE MIR 82 243 -19 4218 62 4 11 chr3_random 3833884 3834415 -4593866 - SVA Other Other 0 1386 860 28 0 0 0 chr3_random 3834556 3834584 -4593697 + AT_rich Low_complexity Low_complexity 1 28 0 684 206 0 0 chr3_random 3834742 3834873 -4593408 - FRAM SINE Alu -5 171 41 22 70 0 0 chr3_random 3834910 3834953 -4593328 + AT_rich Low_complexity Low_complexity 1 43 0 1354 192 21 59 chr3_random 3835126 3835273 -4593008 + MLT1A1 LTR MaLR 11 162 -305 1869 153 0 0 chr3_random 3835273 3835576 -4592705 + AluSx SINE Alu 1 303 0 1354 192 21 59 chr3_random 3835576 3835760 -4592521 + MLT1A1 LTR MaLR 162 431 -36 26 30 0 0 chr3_random 3836909 3836942 -4591339 + AT_rich Low_complexity Low_complexity 1 33 0 307 237 45 181 chr3_random 3836979 3837266 -4591015 + MIR SINE MIR 12 259 -3 471 112 34 22 chr3_random 3837515 3837604 -4590677 - MSTB1 LTR MaLR -342 90 1 1188 133 19 98 chr3_random 3838044 3838300 -4589981 + Tigger2a DNA MER2_type 1 236 -198 29 28 0 0 chr3_random 3838300 3838336 -4589945 + AT_rich Low_complexity Low_complexity 1 36 0 * 216 100 0 25 chr3_random 3838301 3838341 -4589940 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 2188 133 5 24 chr3_random 3838336 3838713 -4589568 - L1PB1 LINE L1 0 6151 5782 406 16 32 32 chr3_random 3838728 3838791 -4589490 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 6025 176 22 33 chr3_random 3838793 3838878 -4589403 - L1PB1 LINE L1 -314 6553 6469 451 66 26 0 chr3_random 3838878 3838954 -4589327 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 180 0 0 0 chr3_random 3838953 3838973 -4589308 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 6025 176 22 33 chr3_random 3838954 3840824 -4587457 - L1PB1 LINE L1 -398 6469 4642 2833 251 71 12 chr3_random 3840835 3841818 -4586463 - L1PB1 LINE L1 -5817 1046 6 1214 153 35 0 chr3_random 3841820 3842023 -4586258 + Tigger2a DNA MER2_type 225 434 0 22 70 0 0 chr3_random 3843526 3843569 -4584712 + AT_rich Low_complexity Low_complexity 1 43 0 285 291 12 23 chr3_random 3844616 3844702 -4583579 - MIR SINE MIR -65 197 113 215 31 31 0 chr3_random 3844702 3844734 -4583547 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 894 132 5 74 chr3_random 3844865 3845055 -4583226 - Tigger1 DNA MER2_type -1773 645 469 1340 185 4 33 chr3_random 3845055 3845325 -4582956 + AluJb SINE Alu 33 294 -18 2542 179 15 19 chr3_random 3845335 3845810 -4582471 - Tigger1 DNA MER2_type -1945 473 1 580 330 78 29 chr3_random 3846041 3846350 -4581931 + L2 LINE L2 1815 2138 -1176 4413 211 21 15 chr3_random 3846538 3847055 -4581226 - L1MA9 LINE L1 0 6312 5799 180 0 0 0 chr3_random 3847055 3847075 -4581206 + (TA)n Simple_repeat Simple_repeat 1 20 0 4413 211 21 15 chr3_random 3847075 3847598 -4580683 - L1MA9 LINE L1 -513 5799 5261 184 200 0 0 chr3_random 3848393 3848428 -4579853 + MIR SINE MIR 216 250 -12 211 113 81 0 chr3_random 3848541 3848603 -4579678 + (TA)n Simple_repeat Simple_repeat 1 67 0 225 356 128 20 chr3_random 3850184 3850333 -4577948 + MIR3 SINE MIR 40 204 -4 819 316 26 36 chr3_random 3850723 3851192 -4577089 - LTR16B LTR ERVL 0 464 1 186 325 72 0 chr3_random 3851452 3851535 -4576746 - MIR SINE MIR -10 252 164 24 0 0 0 chr3_random 3852092 3852116 -4576165 + AT_rich Low_complexity Low_complexity 1 24 0 357 125 0 0 chr3_random 3852168 3852216 -4576065 - MER8 DNA MER2_type 0 239 192 5927 179 113 42 chr3_random 3852217 3853671 -4574610 - MER52A LTR ERV1 -2 1753 197 225 280 0 0 chr3_random 3853660 3853710 -4574571 - MER52C LTR ERV1 -1196 82 33 * 998 124 57 23 chr3_random 3854145 3854322 -4573959 + Tigger2 DNA MER2_type 2280 2462 -256 22 56 0 0 chr3_random 3854376 3854412 -4573869 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr3_random 3854605 3854642 -4573639 + AT_rich Low_complexity Low_complexity 1 37 0 357 366 37 12 chr3_random 3854853 3855017 -4573264 + MIR SINE MIR 92 259 -3 1895 58 4 0 chr3_random 3855140 3855382 -4572899 + L1PA7 LINE L1 5912 6154 0 343 187 19 65 chr3_random 3857760 3857816 -4570465 + MLT1J LTR MaLR 115 165 -346 972 205 104 41 chr3_random 3857816 3858133 -4570148 + MER44D DNA MER2_type 2 608 -1 343 187 19 65 chr3_random 3858133 3858183 -4570098 + MLT1J LTR MaLR 165 216 -295 8571 84 2 0 chr3_random 3858311 3859495 -4568786 - L1P LINE L1 -1383 4763 3577 1105 52 0 0 chr3_random 3859495 3859659 -4568622 + L1PA7 LINE L1 6002 6167 0 1837 129 7 7 chr3_random 3859861 3860178 -4568103 + AluSx SINE Alu 4 320 0 315 266 62 18 chr3_random 3860348 3860461 -4567820 - MLT1J LTR MaLR -277 234 117 326 318 5 64 chr3_random 3860543 3860634 -4567647 - L1M4 LINE L1 -748 5398 5303 1732 177 3 16 chr3_random 3860634 3860950 -4567331 - AluSx SINE Alu 0 312 1 326 318 5 64 chr3_random 3860950 3861078 -4567203 - L1M4 LINE L1 -843 5303 5192 1793 216 44 18 chr3_random 3861227 3861681 -4566600 - MER31B LTR ERV1 0 466 1 23 86 0 0 chr3_random 3863370 3863428 -4564853 + AT_rich Low_complexity Low_complexity 1 58 0 982 251 71 22 chr3_random 3863534 3863857 -4564424 + MER2 DNA MER2_type 7 345 0 225 0 0 0 chr3_random 3863860 3863885 -4564396 + (CA)n Simple_repeat Simple_repeat 2 26 0 232 286 77 11 chr3_random 3864115 3864206 -4564075 + MER117 DNA MER1_type 31 127 -70 195 200 0 89 chr3_random 3864449 3864494 -4563787 + L2 LINE L2 3231 3271 -1 1737 127 80 0 chr3_random 3865628 3865904 -4562377 + AluY SINE Alu 3 300 -11 717 233 53 56 chr3_random 3866182 3866448 -4561833 - MLT1C LTR MaLR -195 272 8 383 402 34 17 chr3_random 3866475 3866766 -4561515 + L1MEd LINE L1 466 761 -5358 2630 250 84 81 chr3_random 3866766 3867981 -4560300 - MER21-int LTR ERV1 -1354 4759 1673 1022 309 36 26 chr3_random 3868066 3868487 -4559794 - MER21-int LTR ERV1 -2554 1637 1213 612 284 11 17 chr3_random 3868537 3868713 -4559568 - MER21-int LTR ERV1 -3760 431 257 180 111 0 0 chr3_random 3868713 3868740 -4559541 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 797 238 34 21 chr3_random 3868740 3868975 -4559306 - MER21-int LTR ERV1 -3924 267 30 273 277 264 45 chr3_random 3869383 3869603 -4558678 - L2 LINE L2 -972 2342 2075 1636 125 31 146 chr3_random 3869755 3870179 -4558102 + THE1C LTR MaLR 1 375 0 924 228 34 55 chr3_random 3870284 3870593 -4557688 - MLT1C LTR MaLR 0 412 173 22 35 0 0 chr3_random 3870594 3870623 -4557658 + AT_rich Low_complexity Low_complexity 1 29 0 1101 241 28 24 chr3_random 3870632 3870881 -4557400 - AluJo SINE Alu -62 250 1 873 153 57 6 chr3_random 3870881 3871057 -4557224 - MLT1C LTR MaLR -282 185 1 1346 167 73 17 chr3_random 3871090 3871390 -4556891 - MER33 DNA MER1_type 0 324 8 1069 220 23 81 chr3_random 3871700 3872045 -4556236 - MLT1D LTR MaLR 0 505 181 436 155 10 19 chr3_random 3872269 3872372 -4555909 + L1MA4 LINE L1 6197 6298 -2 21 0 0 0 chr3_random 3872796 3872817 -4555464 + AT_rich Low_complexity Low_complexity 1 21 0 908 177 39 6 chr3_random 3872975 3873156 -4555125 - MLT1D LTR MaLR -314 191 5 31 88 0 0 chr3_random 3873195 3873275 -4555006 + AT_rich Low_complexity Low_complexity 1 80 0 23 54 0 0 chr3_random 3874021 3874058 -4554223 + AT_rich Low_complexity Low_complexity 1 37 0 324 247 147 67 chr3_random 3874599 3874749 -4553532 + MIR SINE MIR 42 203 -59 2445 103 0 0 chr3_random 3875080 3875429 -4552852 - L1PA7 LINE L1 -1052 5094 4746 6849 63 3 1 chr3_random 3875431 3876477 -4551804 + L1PA7 LINE L1 5097 6144 -10 456 253 0 0 chr3_random 3876879 3876974 -4551307 + MSTD LTR MaLR 3 97 -331 1368 158 33 12 chr3_random 3876979 3877220 -4551061 + AluSq SINE Alu 1 246 -67 1221 100 0 0 chr3_random 3877221 3877381 -4550900 + AluSq SINE Alu 5 164 -149 441 146 0 34 chr3_random 3877381 3877470 -4550811 + AluYb8 SINE Alu 228 313 -5 761 221 136 36 chr3_random 3877470 3877715 -4550566 + MSTD LTR MaLR 93 394 -2 220 343 82 55 chr3_random 3877813 3877959 -4550322 - MER5A DNA MER1_type -3 186 37 545 325 89 53 chr3_random 3880360 3880828 -4547453 + L2 LINE L2 2672 3170 -143 428 271 171 0 chr3_random 3881261 3881390 -4546891 - L2 LINE L2 -5 3308 3158 211 244 13 13 chr3_random 3881401 3881479 -4546802 + (TA)n Simple_repeat Simple_repeat 1 78 0 365 215 11 21 chr3_random 3881651 3881744 -4546537 - Charlie1a DNA MER1_type -4 1451 1360 2389 204 95 20 chr3_random 3881809 3882554 -4545727 - Charlie1a DNA MER1_type -99 1356 556 270 73 0 0 chr3_random 3882571 3882612 -4545669 + (TG)n Simple_repeat Simple_repeat 1 41 0 515 249 47 47 chr3_random 3882612 3882805 -4545476 - Charlie1a DNA MER1_type -1230 225 33 369 235 106 65 chr3_random 3883922 3884006 -4544275 + MIR SINE MIR 86 165 -97 2029 110 7 39 chr3_random 3884006 3884314 -4543967 + AluSp SINE Alu 1 298 -15 369 235 106 65 chr3_random 3884314 3884399 -4543882 + MIR SINE MIR 165 262 0 261 0 0 0 chr3_random 3884601 3884630 -4543651 + (A)n Simple_repeat Simple_repeat 1 29 0 301 257 14 0 chr3_random 3885569 3885643 -4542638 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 315 0 0 0 chr3_random 3885993 3886028 -4542253 + (CA)n Simple_repeat Simple_repeat 1 35 0 2264 112 0 0 chr3_random 3886257 3886569 -4541712 + AluSx SINE Alu 1 312 0 421 78 101 4 chr3_random 3887367 3887630 -4540651 + (TA)n Simple_repeat Simple_repeat 1 288 0 246 156 16 31 chr3_random 3887640 3887704 -4540577 + (TTATA)n Simple_repeat Simple_repeat 4 66 0 300 130 34 34 chr3_random 3887705 3887882 -4540399 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 713 102 57 19 chr3_random 3887852 3888418 -4539863 + (TA)n Simple_repeat Simple_repeat 1 587 0 22 35 0 0 chr3_random 3888600 3888629 -4539652 + AT_rich Low_complexity Low_complexity 1 29 0 540 136 0 0 chr3_random 3889754 3889835 -4538446 - AluSg/x SINE Alu -18 291 211 480 89 0 0 chr3_random 3890194 3890273 -4538008 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 70 0 0 chr3_random 3890534 3890577 -4537704 + AT_rich Low_complexity Low_complexity 1 43 0 377 284 256 33 chr3_random 3890660 3890871 -4537410 + MIR SINE MIR 5 262 0 27 0 0 0 chr3_random 3891638 3891665 -4536616 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr3_random 3892849 3892886 -4535395 + AT_rich Low_complexity Low_complexity 1 37 0 483 307 145 14 chr3_random 3893825 3894108 -4534173 + LTR67 LTR ERVL 210 529 -28 21 0 0 0 chr3_random 3894560 3894581 -4533700 + AT_rich Low_complexity Low_complexity 1 21 0 621 192 53 159 chr3_random 3894760 3894888 -4533393 - MLT1A2 LTR MaLR -104 270 191 1973 142 0 3 chr3_random 3894888 3895184 -4533097 - AluSc SINE Alu -14 295 1 621 192 53 159 chr3_random 3895184 3895357 -4532924 - MLT1A2 LTR MaLR -183 191 1 2465 252 151 44 chr3_random 3895358 3896609 -4531672 - MLT1A1-int LTR MaLR -1 1370 5 1434 262 8 73 chr3_random 3896639 3897135 -4531146 - MLT2B1 LTR ERVL -56 464 1 332 240 48 96 chr3_random 3898231 3898377 -4529904 + LTR16C LTR ERVL 1 139 -352 352 203 149 0 chr3_random 3898618 3898736 -4529545 + MLT1C LTR MaLR 1 133 -257 709 286 85 27 chr3_random 3898792 3899121 -4529160 + MLT1C LTR MaLR 97 444 -23 2052 107 0 54 chr3_random 3899739 3900056 -4528225 - AluSg SINE Alu -10 300 1 194 105 26 0 chr3_random 3900577 3900615 -4527666 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 2119 106 0 7 chr3_random 3901297 3901615 -4526666 - AluSg SINE Alu 0 316 1 613 280 126 25 chr3_random 3901938 3902256 -4526025 - L1M4 LINE L1 -399 5785 5436 1218 213 50 86 chr3_random 3903059 3903387 -4524894 + MSTB2 LTR MaLR 110 425 -32 1467 103 5 0 chr3_random 3903387 3903601 -4524680 - L1MA1 LINE L1 0 6302 6088 1218 213 50 86 chr3_random 3903601 3903633 -4524648 + MSTB2 LTR MaLR 425 457 0 982 253 0 17 chr3_random 3903633 3903870 -4524411 - MLT1A1 LTR MaLR -93 272 40 1126 217 77 59 chr3_random 3904020 3904462 -4523819 - L1ME2 LINE L1 -198 5966 5517 23 33 0 0 chr3_random 3905368 3905398 -4522883 + AT_rich Low_complexity Low_complexity 1 30 0 231 317 42 30 chr3_random 3905406 3905573 -4522708 + L1ME1 LINE L1 5109 5277 -869 327 292 51 15 chr3_random 3905927 3906064 -4522217 + L1ME1 LINE L1 5739 5880 -286 1311 192 148 19 chr3_random 3906332 3906650 -4521631 - MLT1A1 LTR MaLR 0 365 7 301 247 13 0 chr3_random 3906690 3906767 -4521514 - HsTC2 DNA Tc2 -1811 87 10 2178 109 0 3 chr3_random 3906943 3907246 -4521035 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr3_random 3907403 3907424 -4520857 + AT_rich Low_complexity Low_complexity 1 21 0 234 254 0 0 chr3_random 3908828 3908891 -4519390 + (CAATA)n Simple_repeat Simple_repeat 3 65 0 2078 112 0 23 chr3_random 3909376 3909681 -4518600 - AluSg SINE Alu -12 298 1 29 78 0 0 chr3_random 3910328 3910392 -4517889 + AT_rich Low_complexity Low_complexity 1 64 0 235 224 0 0 chr3_random 3910463 3910521 -4517760 - L1 LINE L1 -1815 4331 4274 * 578 88 0 0 chr3_random 3910520 3910600 -4517681 + L1PBa LINE L1 2829 2908 -3955 * 1995 182 10 0 chr3_random 3910596 3910980 -4517301 + L1P LINE L1 4927 5314 -832 5818 114 10 7 chr3_random 3910980 3912112 -4516169 + L1PA14 LINE L1 5008 6147 -14 192 40 0 0 chr3_random 3912125 3912150 -4516131 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 5296 217 42 42 chr3_random 3912150 3912239 -4516042 + L1 LINE L1 2894 2982 -3880 2225 99 3 16 chr3_random 3912239 3912552 -4515729 + AluSc SINE Alu 1 309 0 5296 217 42 42 chr3_random 3912552 3914448 -4513833 + L1 LINE L1 2982 5000 -1862 415 313 111 41 chr3_random 3914455 3914771 -4513510 - L1M4 LINE L1 -841 5305 4968 11246 188 30 11 chr3_random 3915566 3917609 -4510672 - L1MA3 LINE L1 0 7724 5585 1881 144 0 3 chr3_random 3917609 3917924 -4510357 + AluSq SINE Alu 1 314 0 11246 188 30 11 chr3_random 3917924 3919396 -4508885 - L1MA3 LINE L1 -2139 5585 4142 25059 148 16 11 chr3_random 3919470 3924643 -4503638 - L1PA8A LINE L1 0 6446 1239 222 91 0 0 chr3_random 3924643 3924676 -4503605 + (TTG)n Simple_repeat Simple_repeat 1 33 0 25059 148 16 11 chr3_random 3924676 3924737 -4503544 - L1PA8A LINE L1 -5207 1239 1180 7292 131 6 4 chr3_random 3924750 3925847 -4502434 - L1PA8A LINE L1 -4774 1101 2 6494 160 24 13 chr3_random 3925850 3927042 -4501239 - L1MA3 LINE L1 -3423 4142 2921 1706 189 138 0 chr3_random 3927042 3927418 -4500863 + MSTA LTR MaLR 1 428 0 6494 160 24 13 chr3_random 3927418 3927810 -4500471 - L1MA3 LINE L1 -4644 2921 2535 2450 183 16 0 chr3_random 3927794 3928231 -4500050 - L1MA3 LINE L1 -6518 1047 604 * 21 0 0 0 chr3_random 3929302 3929323 -4498958 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3_random 3930619 3930655 -4497626 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3_random 3931274 3931298 -4496983 + AT_rich Low_complexity Low_complexity 1 24 0 240 305 21 11 chr3_random 3932059 3932154 -4496127 + MIR SINE MIR 50 145 -117 564 231 67 0 chr3_random 3932482 3932616 -4495665 + MER58B DNA MER1_type 185 327 -14 356 247 56 120 chr3_random 3933923 3933969 -4494312 - MLT1G LTR MaLR -8 582 535 1728 170 11 0 chr3_random 3933969 3934252 -4494029 - AluSx SINE Alu -21 291 6 356 247 56 120 chr3_random 3934252 3934765 -4493516 - MLT1G LTR MaLR -55 535 61 204 118 29 0 chr3_random 3940200 3940234 -4488047 + (CA)n Simple_repeat Simple_repeat 2 36 0 2447 118 3 6 chr3_random 3941906 3942271 -4486010 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr3_random 3942646 3942669 -4485612 + AT_rich Low_complexity Low_complexity 1 23 0 257 315 79 62 chr3_random 3943914 3944206 -4484075 + L2 LINE L2 2973 3269 -44 315 146 0 0 chr3_random 3944864 3944919 -4483362 + (TG)n Simple_repeat Simple_repeat 2 56 0 190 206 0 0 chr3_random 3945895 3945929 -4482352 - L2 LINE L2 -8 3305 3272 1275 326 35 21 chr3_random 3947292 3947946 -4480335 + L1MC4a LINE L1 5392 6054 -1754 459 264 7 21 chr3_random 3948151 3948291 -4479990 + L1ME1 LINE L1 6024 6161 -5 240 35 0 0 chr3_random 3948551 3948580 -4479701 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1909 148 16 0 chr3_random 3948582 3948885 -4479396 - AluSq SINE Alu 0 313 6 561 255 60 16 chr3_random 3948896 3949080 -4479201 + L2 LINE L2 3114 3305 -8 545 299 54 91 chr3_random 3949226 3949409 -4478872 - L2 LINE L2 -1163 2151 1963 255 31 0 0 chr3_random 3949409 3949441 -4478840 + (CA)n Simple_repeat Simple_repeat 2 33 0 545 299 54 91 chr3_random 3949441 3949665 -4478616 - L2 LINE L2 -1351 1963 1759 666 306 52 46 chr3_random 3949740 3950087 -4478194 - MLT1H1 LTR MaLR -168 387 39 1932 195 5 16 chr3_random 3950475 3950849 -4477432 - MSTB1 LTR MaLR -59 373 4 305 131 16 0 chr3_random 3950850 3950911 -4477370 + (TA)n Simple_repeat Simple_repeat 1 62 0 4636 48 3 0 chr3_random 3950957 3951535 -4476746 - L1PA4 LINE L1 0 6155 5576 1317 33 0 0 chr3_random 3951535 3951709 -4476572 + L1PA4 LINE L1 5422 5595 -559 192 282 155 0 chr3_random 3951814 3951885 -4476396 + L2 LINE L2 3183 3264 -49 23 33 0 0 chr3_random 3952063 3952093 -4476188 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3_random 3952187 3952220 -4476061 + AT_rich Low_complexity Low_complexity 1 33 0 188 321 0 0 chr3_random 3953026 3953079 -4475202 + L2 LINE L2 3256 3308 -5 23 33 0 0 chr3_random 3953104 3953134 -4475147 + AT_rich Low_complexity Low_complexity 1 30 0 181 317 0 0 chr3_random 3953352 3953393 -4474888 - L3b LINE CR1 -106 1477 1437 21 0 0 0 chr3_random 3953488 3953509 -4474772 + AT_rich Low_complexity Low_complexity 1 21 0 905 369 67 27 chr3_random 3953612 3954526 -4473755 + HERVL LTR ERVL 2953 3902 -1752 540 351 76 21 chr3_random 3954694 3955022 -4473259 + HERVL LTR ERVL 4106 4451 -1203 475 271 131 38 chr3_random 3956178 3956414 -4471867 + LTR16A1 LTR ERVL 173 430 -27 21 57 0 0 chr3_random 3956809 3956844 -4471437 + AT_rich Low_complexity Low_complexity 1 35 0 203 211 13 40 chr3_random 3957635 3957711 -4470570 + (TAAA)n Simple_repeat Simple_repeat 4 77 0 23 33 0 0 chr3_random 3958921 3958951 -4469330 + AT_rich Low_complexity Low_complexity 1 30 0 3300 72 13 13 chr3_random 3960072 3960542 -4467739 - L1PA8 LINE L1 0 6172 5703 209 151 75 0 chr3_random 3960554 3960607 -4467674 + A-rich Low_complexity Low_complexity 2 58 0 1462 195 3 29 chr3_random 3961502 3961809 -4466472 - AluJb SINE Alu -1 311 13 252 293 193 13 chr3_random 3962858 3963008 -4465273 + L2 LINE L2 2611 2787 -527 677 276 74 14 chr3_random 3963214 3963431 -4464850 - HERVL40 LTR ERVL -5300 230 1 478 183 75 33 chr3_random 3963432 3963552 -4464729 - LTR40a LTR ERVL 0 519 395 356 290 79 13 chr3_random 3963592 3963895 -4464386 - L1M4 LINE L1 -1438 4708 4386 282 196 20 0 chr3_random 3964497 3964548 -4463733 - MLT1E1 LTR MaLR -538 116 65 554 235 154 9 chr3_random 3964549 3964770 -4463511 - L1M4 LINE L1 -2809 3337 3085 980 276 53 14 chr3_random 3964782 3965199 -4463082 + L1M4 LINE L1 2448 2880 -3266 1278 227 85 19 chr3_random 3965205 3965571 -4462710 - MLT1B LTR MaLR 0 390 1 2982 176 10 0 chr3_random 3966100 3966618 -4461663 - Tigger1 DNA MER2_type 0 2418 1896 2063 260 107 67 chr3_random 3966619 3967115 -4461166 + Tigger1 DNA MER2_type 355 883 -1535 1612 116 4 0 chr3_random 3967115 3967340 -4460941 - AluSx SINE Alu -86 226 1 2063 260 107 67 chr3_random 3967340 3967467 -4460814 + Tigger1 DNA MER2_type 883 1003 -1415 1680 202 6 29 chr3_random 3967465 3967811 -4460470 - Tigger1 DNA MER2_type -2080 338 1 * 507 134 72 0 chr3_random 3968106 3968203 -4460078 + L1MA4 LINE L1 6181 6284 -16 1789 154 55 25 chr3_random 3968204 3968567 -4459714 - THE1C LTR MaLR -1 374 1 24 67 0 0 chr3_random 3969068 3969113 -4459168 + AT_rich Low_complexity Low_complexity 1 45 0 7515 25 0 12 chr3_random 3969357 3970433 -4457848 - L1PA4 LINE L1 0 6155 5089 5972 45 1 4 chr3_random 3970433 3971190 -4457091 + L1PA4 LINE L1 4347 5101 -1045 27 0 0 0 chr3_random 3971350 3971377 -4456904 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr3_random 3971440 3971471 -4456810 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3_random 3971542 3971570 -4456711 + AT_rich Low_complexity Low_complexity 1 28 0 770 240 84 102 chr3_random 3972183 3972587 -4455694 + MER57A LTR ERV1 2 398 -5 362 302 41 24 chr3_random 3972595 3972764 -4455517 + MER57A-int LTR ERV1 3 174 -7363 3513 176 34 0 chr3_random 3973453 3973637 -4454644 - L1P4 LINE L1 -564 5597 5421 2414 62 10 0 chr3_random 3973637 3973945 -4454336 - AluY SINE Alu 0 311 1 3513 176 34 0 chr3_random 3973945 3974648 -4453633 - L1P4 LINE L1 -740 5421 4679 3684 90 28 6 chr3_random 3974649 3975181 -4453100 + L1PA13 LINE L1 5615 6158 -5 554 197 15 22 chr3_random 3975302 3975439 -4452842 + MER57A-int LTR ERV1 297 432 -4504 855 176 148 64 chr3_random 3975585 3975976 -4452305 + MER57A-int LTR ERV1 1043 1466 -3470 351 293 63 63 chr3_random 3975828 3976098 -4452183 + LTR57-int LTR ERVL 1223 1492 -3851 * 249 128 0 0 chr3_random 3976256 3976303 -4451978 + (CCCA)n Simple_repeat Simple_repeat 3 49 0 617 223 74 74 chr3_random 3976465 3976842 -4451439 + MER57A-int LTR ERV1 1997 2373 -2563 248 250 58 0 chr3_random 3976858 3976910 -4451371 + Tigger5 DNA MER2_type 1 55 -2268 * 322 175 0 35 chr3_random 3976890 3976947 -4451334 + Tigger5 DNA MER2_type 2264 2318 -5 550 195 0 0 chr3_random 3976965 3977052 -4451229 - Tigger5 DNA MER2_type -2236 87 1 409 247 0 0 chr3_random 3977063 3977144 -4451137 + Tigger5 DNA MER2_type 2237 2317 -6 393 266 9 0 chr3_random 3977155 3977264 -4451017 + LOR1-int LTR ERV1 4049 4158 -3962 6084 188 33 15 chr3_random 3977394 3979594 -4448687 - L1MA4 LINE L1 -6 6294 4054 28 48 0 0 chr3_random 3980633 3980675 -4447606 + AT_rich Low_complexity Low_complexity 1 42 0 325 305 78 14 chr3_random 3981167 3981308 -4446973 - MLT1D LTR MaLR -1 504 355 205 89 44 0 chr3_random 3981313 3981358 -4446923 + T-rich Low_complexity Low_complexity 2 48 0 180 0 0 0 chr3_random 3981653 3981673 -4446608 + (TTA)n Simple_repeat Simple_repeat 2 21 0 756 43 0 0 chr3_random 3981674 3981767 -4446514 - L1PA4 LINE L1 -17 6138 6046 30 69 0 0 chr3_random 3983539 3983597 -4444684 + AT_rich Low_complexity Low_complexity 1 58 0 408 287 21 80 chr3_random 3983680 3983868 -4444413 - MER5B DNA MER1_type -1 177 1 258 156 0 0 chr3_random 3984734 3984779 -4443502 + CT-rich Low_complexity Low_complexity 3 47 0 28 29 0 0 chr3_random 3985412 3985447 -4442834 + AT_rich Low_complexity Low_complexity 1 35 0 293 267 13 27 chr3_random 3985485 3985560 -4442721 + L2 LINE L2 3226 3299 -14 309 364 0 0 chr3_random 3986422 3986573 -4441708 + (TGG)n Simple_repeat Simple_repeat 1 151 0 228 135 0 0 chr3_random 3987305 3987342 -4440939 + (ATG)n Simple_repeat Simple_repeat 3 39 0 1757 320 170 34 chr3_random 3987394 3989379 -4438902 - L2 LINE L2 -7 3306 1059 259 313 58 91 chr3_random 4389627 4389870 -4038411 - L2 LINE L2 -759 2555 2321 185 196 18 0 chr3_random 4390140 4390196 -4038085 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 25 51 0 0 chr3_random 4390224 4390263 -4038018 + AT_rich Low_complexity Low_complexity 1 39 0 4288 177 7 85 chr3_random 4390787 4391867 -4036414 - Tigger4(Zombi) DNA MER2_type -504 2227 1232 2166 180 118 12 chr3_random 4391967 4392688 -4035593 - SATR1 Satellite Satellite 0 797 1 327 202 40 16 chr3_random 4392694 4392818 -4035463 + (TTATA)n Simple_repeat Simple_repeat 5 131 0 362 240 212 0 chr3_random 4392824 4392970 -4035311 + SATR1 Satellite Satellite 148 324 -146 1428 147 116 0 chr3_random 4393014 4393307 -4034974 - SATR1 Satellite Satellite -93 377 51 224 165 25 89 chr3_random 4394561 4394640 -4033641 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 194 91 30 0 chr3_random 4394649 4394682 -4033599 + (TA)n Simple_repeat Simple_repeat 2 35 0 370 326 83 33 chr3_random 4394789 4394970 -4033311 + L1ME LINE L1 5415 5604 -517 180 313 48 24 chr3_random 4395183 4395266 -4033015 - MIR SINE MIR -138 124 40 2479 161 21 8 chr3_random 4395368 4395890 -4032391 + L1 LINE L1 4874 5402 -744 1432 40 0 0 chr3_random 4395887 4396063 -4032218 - L1P2 LINE L1 -496 5658 5483 * 1715 42 0 0 chr3_random 4396061 4396275 -4032006 + L1PA5 LINE L1 5795 6008 -146 24 0 0 0 chr3_random 4397595 4397619 -4030662 + AT_rich Low_complexity Low_complexity 1 24 0 286 235 104 43 chr3_random 4398161 4398276 -4030005 + MIR SINE MIR 110 231 -31 459 0 0 0 chr3_random 4398283 4398334 -4029947 + (TA)n Simple_repeat Simple_repeat 2 52 0 249 220 0 0 chr3_random 4398953 4399003 -4029278 + L2 LINE L2 3219 3268 -4 22 56 0 0 chr3_random 4399414 4399450 -4028831 + AT_rich Low_complexity Low_complexity 1 36 0 297 209 45 15 chr3_random 4399786 4399853 -4028428 - MIR3 SINE MIR -15 193 125 1324 0 0 0 chr3_random 4400000 4400141 -4028140 - AluYa5 SINE Alu -170 141 1 676 341 5 0 chr3_random 4400268 4400491 -4027790 - L3 LINE CR1 0 1577 1354 426 352 75 9 chr3_random 4400962 4401175 -4027106 - MIR SINE MIR -26 236 10 1931 132 36 0 chr3_random 4401483 4401764 -4026517 + AluSq SINE Alu 1 291 -22 2981 150 15 15 chr3_random 4402484 4403017 -4025264 + L1P LINE L1 3697 4229 -1917 1238 229 17 54 chr3_random 4403330 4403740 -4024541 + MLT2C1 LTR ERVL 3 397 0 2589 247 45 109 chr3_random 4403740 4404187 -4024094 + MLT1D-int LTR MaLR 1 475 -896 213 0 81 0 chr3_random 4404187 4404224 -4024057 + T-rich Low_complexity Low_complexity 2 41 0 2589 247 45 109 chr3_random 4404224 4405241 -4023040 + MLT1D-int LTR MaLR 475 1371 0 2325 166 26 14 chr3_random 4405275 4405698 -4022583 + MSTA LTR MaLR 1 428 0 2048 114 25 28 chr3_random 4405705 4406066 -4022215 - THE1C LTR MaLR -15 360 1 9954 122 23 33 chr3_random 4406066 4407662 -4020619 - THE1C-int LTR MaLR 0 1580 1 591 98 0 0 chr3_random 4407670 4407752 -4020529 - THE1C LTR MaLR 0 428 347 2012 197 14 49 chr3_random 4407757 4408245 -4020036 + MLT1D LTR MaLR 31 501 -4 553 273 44 24 chr3_random 4408651 4408856 -4019425 + MER63A DNA MER1_type 2 210 0 28 0 0 0 chr3_random 4408960 4408988 -4019293 + AT_rich Low_complexity Low_complexity 1 28 0 241 281 79 0 chr3_random 4409032 4409121 -4019160 - MIR SINE MIR -3 259 164 310 201 22 82 chr3_random 4411036 4411100 -4017181 - L1MC4 LINE L1 -17 8025 7972 622 208 93 49 chr3_random 4411100 4411326 -4016955 - MER106A DNA MER1_type 0 236 1 310 201 22 82 chr3_random 4411326 4411395 -4016886 - L1MC4 LINE L1 -70 7972 7900 211 188 0 42 chr3_random 4411395 4411443 -4016838 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 23 33 0 0 chr3_random 4412088 4412118 -4016163 + AT_rich Low_complexity Low_complexity 1 30 0 645 246 121 10 chr3_random 4412208 4412407 -4015874 - MER58A DNA MER1_type 0 224 4 2199 161 118 8 chr3_random 4413131 4414923 -4013358 + SATR1 Satellite Satellite 1 1989 0 2521 164 99 14 chr3_random 4414953 4418515 -4009766 + SATR1 Satellite Satellite 1 3863 -13 22 0 0 0 chr3_random 4418718 4418740 -4009541 + AT_rich Low_complexity Low_complexity 1 22 0 3694 91 0 17 chr3_random 4418795 4419379 -4008902 - L1PA6 LINE L1 -784 5362 4789 5834 60 48 0 chr3_random 4419379 4420143 -4008138 + L1PA6 LINE L1 5348 6151 -3 475 201 27 27 chr3_random 4420384 4420533 -4007748 + L1ME3 LINE L1 5254 5402 -760 816 264 50 10 chr3_random 4420539 4420838 -4007443 + L1ME3 LINE L1 5826 6136 -26 468 292 46 15 chr3_random 4421401 4421531 -4006750 + L2 LINE L2 3139 3272 0 200 188 0 0 chr3_random 4421674 4421706 -4006575 + polypurine Low_complexity Low_complexity 2 33 0 556 287 187 5 chr3_random 4422425 4422634 -4005647 - MIR SINE MIR -6 256 10 702 262 52 49 chr3_random 4422876 4423143 -4005138 - LTR16A LTR ERVL -88 362 95 939 297 105 16 chr3_random 4423564 4424128 -4004153 - L2 LINE L2 -19 3294 2687 387 214 34 11 chr3_random 4425175 4425264 -4003017 + MIR3 SINE MIR 67 157 -51 1090 166 19 28 chr3_random 4425269 4425480 -4002801 - MER3 DNA MER1_type 0 209 1 195 266 105 91 chr3_random 4425592 4425735 -4002546 + MIR3 SINE MIR 4 148 -60 21 0 0 0 chr3_random 4429182 4429203 -3999078 + AT_rich Low_complexity Low_complexity 1 21 0 360 341 70 14 chr3_random 4430406 4430620 -3997661 - MIR SINE MIR -5 257 32 188 211 77 0 chr3_random 4431310 4431362 -3996919 + MIR SINE MIR 69 124 -138 200 325 128 34 chr3_random 4433054 4433171 -3995110 + MIR SINE MIR 43 170 -92 216 149 0 0 chr3_random 4433208 4433255 -3995026 + (TTCC)n Simple_repeat Simple_repeat 4 50 0 4267 244 83 12 chr3_random 4433514 4434877 -3993404 + L1MC4 LINE L1 6444 7902 -140 2042 134 0 48 chr3_random 4435300 4435613 -3992668 + AluSx SINE Alu 3 300 -12 945 263 12 8 chr3_random 4436053 4436312 -3991969 + MIR SINE MIR 3 262 0 226 269 0 127 chr3_random 4436634 4436768 -3991513 - MIR SINE MIR -62 200 84 1529 225 7 0 chr3_random 4437526 4437819 -3990462 + AluJo SINE Alu 9 303 -9 25 51 0 0 chr3_random 4437873 4437912 -3990369 + AT_rich Low_complexity Low_complexity 1 39 0 424 309 81 34 chr3_random 4438003 4438345 -3989936 + L1ME LINE L1 5271 5640 -522 1591 191 157 44 chr3_random 4438397 4438848 -3989433 - MLT1D LTR MaLR -3 502 1 309 289 70 13 chr3_random 4438886 4439042 -3989239 + L1ME LINE L1 4900 5064 -1082 7355 29 2 2 chr3_random 4439046 4440036 -3988245 + L1PA4 LINE L1 5172 6159 0 553 241 71 0 chr3_random 4440049 4440161 -3988120 + FLAM_A SINE Alu 2 121 -12 195 42 0 0 chr3_random 4440161 4440185 -3988096 + (TA)n Simple_repeat Simple_repeat 2 25 0 259 299 91 20 chr3_random 4440225 4440422 -3987859 + L1ME LINE L1 5618 5828 -334 1056 275 104 38 chr3_random 4440459 4441019 -3987262 + L2 LINE L2 2714 3296 -17 517 103 0 0 chr3_random 4441822 4441900 -3986381 - L1PB1 LINE L1 0 6151 6074 250 259 143 9 chr3_random 4441968 4442080 -3986201 - MIR SINE MIR -62 146 20 1358 222 47 21 chr3_random 4442294 4442632 -3985649 + MLT1A1 LTR MaLR 19 365 0 251 288 237 0 chr3_random 4444593 4444711 -3983570 - MIR SINE MIR -68 194 49 1885 167 9 0 chr3_random 4444810 4445133 -3983148 + L1MB3 LINE L1 5481 5806 -377 1725 161 100 0 chr3_random 4445235 4445565 -3982716 + L1MB3 LINE L1 5810 6172 -11 28 0 0 0 chr3_random 4445574 4445602 -3982679 + AT_rich Low_complexity Low_complexity 1 28 0 1756 167 134 3 chr3_random 4445633 4445992 -3982289 + MLT2C2 LTR ERVL 1 406 -58 294 29 0 0 chr3_random 4445995 4446030 -3982251 + (TC)n Simple_repeat Simple_repeat 2 36 0 * 309 26 0 0 chr3_random 4446029 4446067 -3982214 + (TG)n Simple_repeat Simple_repeat 1 38 0 408 67 0 0 chr3_random 4446067 4446127 -3982154 + (GA)n Simple_repeat Simple_repeat 2 61 0 230 118 0 0 chr3_random 4446142 4446176 -3982105 + MLT2C1 LTR ERVL 354 387 -10 2131 117 3 29 chr3_random 4446199 4446515 -3981766 + AluSx SINE Alu 1 308 -4 3576 216 83 14 chr3_random 4446564 4447036 -3981245 + L1MD2 LINE L1 5394 5832 -527 1606 96 0 0 chr3_random 4447036 4447256 -3981025 + L1PA8 LINE L1 5947 6166 -6 3576 216 83 14 chr3_random 4447256 4447685 -3980596 + L1MD2 LINE L1 5832 6357 -2 377 318 11 80 chr3_random 4449749 4449925 -3978356 - MIR SINE MIR -76 186 23 329 220 44 22 chr3_random 4450314 4450405 -3977876 + MER91B DNA MER1_type 38 130 -60 475 269 10 0 chr3_random 4450418 4450522 -3977759 + MER91B DNA MER1_type 85 189 -1 1743 146 29 25 chr3_random 4451399 4451679 -3976602 + AluSx SINE Alu 14 294 -18 2087 102 11 3 chr3_random 4451680 4451965 -3976316 + AluSx SINE Alu 1 287 -25 603 292 136 56 chr3_random 4452032 4452443 -3975838 + MLT1H LTR MaLR 1 444 -105 24 0 0 0 chr3_random 4452596 4452620 -3975661 + AT_rich Low_complexity Low_complexity 1 24 0 209 294 0 0 chr3_random 4452623 4452674 -3975607 - L2 LINE L2 0 3313 3263 228 316 70 38 chr3_random 4454421 4454579 -3973702 + MIR SINE MIR 57 219 -43 1806 104 8 4 chr3_random 4454638 4454879 -3973402 - AluSq SINE Alu -37 276 35 3504 167 14 2 chr3_random 4455371 4456011 -3972270 + L1P LINE L1 4330 4977 -1169 345 327 65 9 chr3_random 4456016 4456230 -3972051 - MLT1J LTR MaLR -280 231 6 262 245 20 41 chr3_random 4456290 4456388 -3971893 + MLT1K LTR MaLR 335 430 -158 302 274 108 0 chr3_random 4456421 4456523 -3971758 + MLT1L LTR MaLR 503 615 0 447 302 30 50 chr3_random 4457834 4458036 -3970245 + MLT1I LTR MaLR 89 286 -123 299 268 27 45 chr3_random 4458069 4458181 -3970100 + MLT1J2 LTR MaLR 318 427 -23 821 96 8 0 chr3_random 4458660 4458785 -3969496 + (TAGA)n Simple_repeat Simple_repeat 2 127 0 509 281 31 0 chr3_random 4459022 4459150 -3969131 + L2 LINE L2 3182 3313 0 700 246 39 20 chr3_random 4459500 4459703 -3968578 + L1ME3 LINE L1 5826 6032 -130 2687 133 6 50 chr3_random 4460023 4460525 -3967756 + L1MA9 LINE L1 5386 5865 -426 2431 138 36 34 chr3_random 4460525 4460872 -3967409 + MER65A LTR ERV1 1 351 -94 1875 126 190 14 chr3_random 4460872 4461236 -3967045 + MSTA LTR MaLR 1 428 0 2431 138 36 34 chr3_random 4461236 4461331 -3966950 + MER65A LTR ERV1 351 444 -1 2289 153 59 0 chr3_random 4461331 4461756 -3966525 + L1MA9 LINE L1 5861 6310 -2 23 33 0 0 chr3_random 4461758 4461788 -3966493 + AT_rich Low_complexity Low_complexity 1 30 0 32 67 0 0 chr3_random 4462045 4462105 -3966176 + AT_rich Low_complexity Low_complexity 1 60 0 777 229 56 0 chr3_random 4462536 4462715 -3965566 - MER5A DNA MER1_type 0 189 1 432 241 199 14 chr3_random 4462913 4463054 -3965227 + MER5A DNA MER1_type 16 182 -7 736 220 35 45 chr3_random 4463212 4463412 -3964869 - MER58A DNA MER1_type 0 224 27 314 222 230 56 chr3_random 4463553 4463679 -3964602 + MER5B DNA MER1_type 1 148 -30 343 188 31 62 chr3_random 4463680 4463776 -3964505 + MER81 DNA DNA 1 93 -21 194 297 31 0 chr3_random 4463868 4463932 -3964349 + MIR SINE MIR 84 149 -113 206 238 24 0 chr3_random 4464122 4464164 -3964117 + MER5A DNA MER1_type 140 182 -7 864 261 118 92 chr3_random 4464164 4465002 -3963279 + HAL1 LINE L1 90 981 -1526 1550 101 23 5 chr3_random 4465002 4465221 -3963060 + AluSg/x SINE Alu 80 302 -8 864 261 118 92 chr3_random 4465221 4465791 -3962490 + HAL1 LINE L1 981 1535 -972 * 2055 238 61 18 chr3_random 4465788 4466523 -3961758 + L1MEc LINE L1 1592 2358 -4038 * 3186 245 78 53 chr3_random 4466521 4467937 -3960344 + L1MEc LINE L1 3283 4734 -1481 659 257 60 57 chr3_random 4468252 4468587 -3959694 + HAL1 LINE L1 2172 2507 0 200 354 10 0 chr3_random 4468985 4469081 -3959200 + A-rich Low_complexity Low_complexity 2 98 0 209 255 128 90 chr3_random 4469459 4469647 -3958634 - L2 LINE L2 -95 3218 3024 351 237 38 95 chr3_random 4469654 4469865 -3958416 + MER110 LTR ERV1 263 461 -30 373 279 53 136 chr3_random 4469871 4469979 -3958302 - L2 LINE L2 -1057 2257 2142 694 165 30 30 chr3_random 4469979 4470112 -3958169 + FLAM_C SINE Alu 1 133 0 373 279 53 136 chr3_random 4470112 4470268 -3958013 - L2 LINE L2 -1172 2142 2015 505 264 92 40 chr3_random 4470879 4471053 -3957228 - MIR3 SINE MIR -7 201 19 2541 105 39 3 chr3_random 4471388 4471750 -3956531 + THE1C LTR MaLR 1 375 0 10050 116 52 3 chr3_random 4471750 4473256 -3955025 + THE1C-int LTR MaLR 1 1580 0 2672 108 0 13 chr3_random 4473256 4473636 -3954645 + THE1C LTR MaLR 1 375 0 1499 212 3 3 chr3_random 4474608 4474896 -3953385 - AluJb SINE Alu -23 289 2 2934 151 2 14 chr3_random 4474901 4475390 -3952891 - L1PA16 LINE L1 0 6166 5684 1535 112 5 0 chr3_random 4475599 4475805 -3952476 - AluSq SINE Alu -104 209 3 180 288 96 72 chr3_random 4475815 4475940 -3952341 + L2 LINE L2 2693 2820 -494 528 296 92 12 chr3_random 4475945 4476185 -3952096 - MER102b DNA MER1_type 0 341 83 213 175 0 0 chr3_random 4478054 4478094 -3950187 + (TA)n Simple_repeat Simple_repeat 2 41 0 1372 208 18 133 chr3_random 4478623 4479194 -3949087 + MLT1D LTR MaLR 1 505 0 484 324 33 48 chr3_random 4479466 4479738 -3948543 + L2 LINE L2 2700 2967 -347 932 250 35 27 chr3_random 4480127 4480387 -3947894 + MIR SINE MIR 1 262 0 2084 199 5 5 chr3_random 4480482 4480878 -3947403 + MSTD LTR MaLR 1 396 0 603 62 0 0 chr3_random 4481734 4481814 -3946467 + (TG)n Simple_repeat Simple_repeat 2 81 0 204 274 194 0 chr3_random 4482626 4482688 -3945593 + MIR3 SINE MIR 82 155 -53 22 35 0 0 chr3_random 4483846 4483875 -3944406 + AT_rich Low_complexity Low_complexity 1 29 0 248 313 94 10 chr3_random 4484327 4484423 -3943858 + MER81 DNA DNA 10 113 -1 950 202 11 5 chr3_random 4484424 4484612 -3943669 - MER5A DNA MER1_type 0 189 1 268 315 55 41 chr3_random 4485448 4485594 -3942687 - L3b LINE CR1 -113 1470 1323 182 330 0 73 chr3_random 4485967 4486076 -3942205 - L3 LINE CR1 -819 758 658 258 116 0 0 chr3_random 4486562 4486605 -3941676 + (GA)n Simple_repeat Simple_repeat 2 44 0 29 28 0 0 chr3_random 4487425 4487461 -3940820 + AT_rich Low_complexity Low_complexity 1 36 0 314 270 11 0 chr3_random 4487488 4487577 -3940704 + L1ME LINE L1 5563 5652 -469 2040 99 3 23 chr3_random 4488899 4489201 -3939080 - AluY SINE Alu -15 296 1 253 48 0 0 chr3_random 4489439 4489481 -3938800 + L1MA4 LINE L1 6029 6074 -231 21 36 0 0 chr3_random 4489920 4489948 -3938333 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3_random 4490101 4490132 -3938149 + AT_rich Low_complexity Low_complexity 1 31 0 1408 127 53 4 chr3_random 4491542 4491787 -3936494 + L1PA15 LINE L1 5909 6165 0 186 342 13 0 chr3_random 4492450 4492529 -3935752 + MIR SINE MIR 177 256 -6 25 31 0 0 chr3_random 4492561 4492593 -3935688 + AT_rich Low_complexity Low_complexity 1 32 0 394 266 92 95 chr3_random 4492725 4493074 -3935207 + MLT1I LTR MaLR 60 407 -2 253 341 23 11 chr3_random 4494102 4494190 -3934091 - MIR3 SINE MIR -11 197 109 813 192 91 0 chr3_random 4495332 4495551 -3932730 - MER5C DNA MER1_type 0 324 86 22 0 0 0 chr3_random 4495645 4495667 -3932614 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3_random 4496790 4496818 -3931463 + AT_rich Low_complexity Low_complexity 1 28 0 2322 123 25 8 chr3_random 4497090 4497448 -3930833 - THE1B LTR MaLR 0 364 1 482 143 0 0 chr3_random 4498662 4498739 -3929542 + AluJ/FRAM SINE Alu 216 292 -20 1605 287 95 15 chr3_random 4498772 4499364 -3928917 + Zaphod DNA AcHobo 1 639 -3392 1852 220 94 22 chr3_random 4499379 4500057 -3928224 + Zaphod DNA AcHobo 3296 4022 -9 592 287 130 23 chr3_random 4500084 4500384 -3927897 - L2 LINE L2 -722 2592 2261 303 259 86 9 chr3_random 4501252 4501368 -3926913 + MER103 DNA DNA 32 156 -10 226 231 77 0 chr3_random 4501486 4501564 -3926717 + L1MC4 LINE L1 6614 6697 -1345 238 87 0 0 chr3_random 4501594 4501640 -3926641 + LTR66 LTR ERVL 394 439 -171 1652 187 0 32 chr3_random 4501846 4502181 -3926100 + AluJo SINE Alu 1 312 0 219 269 52 82 chr3_random 4504360 4504494 -3923787 - MIR3 SINE MIR -69 139 10 2019 128 7 3 chr3_random 4504836 4505124 -3923157 + AluSx SINE Alu 2 290 -22 22 0 0 0 chr3_random 4505741 4505763 -3922518 + AT_rich Low_complexity Low_complexity 1 22 0 560 265 36 20 chr3_random 4508210 4508406 -3919875 - L2 LINE L2 0 3313 3115 753 149 149 19 chr3_random 4509512 4509673 -3918608 + MER3 DNA MER1_type 1 182 -27 5801 207 13 1 chr3_random 4511241 4513336 -3914945 + L1PA16 LINE L1 4058 6159 -7 388 274 28 0 chr3_random 4513363 4513469 -3914812 - MIR SINE MIR -88 174 66 194 122 0 143 chr3_random 4514107 4514156 -3914125 - L2 LINE L2 0 3313 3272 662 298 37 18 chr3_random 4514575 4514793 -3913488 - MIR SINE MIR -38 224 3 288 325 50 33 chr3_random 4515548 4515668 -3912613 + L2 LINE L2 3150 3271 -1 720 264 93 59 chr3_random 4515674 4515996 -3912285 + MLT1H LTR MaLR 2 334 -215 1515 273 117 2 chr3_random 4516109 4516607 -3911674 - MLT1H1 LTR MaLR 0 555 1 350 203 171 41 chr3_random 4516820 4516943 -3911338 + L3 LINE CR1 1433 1571 -6 704 284 31 27 chr3_random 4517236 4517458 -3910823 + MIR SINE MIR 1 223 -39 1155 77 0 19 chr3_random 4517615 4517770 -3910511 + AluSg/x SINE Alu 158 309 -3 267 103 0 0 chr3_random 4517773 4517812 -3910469 + (GGAGAA)n Simple_repeat Simple_repeat 3 41 0 955 209 121 0 chr3_random 4518196 4518402 -3909879 - MSTD LTR MaLR -2 394 164 704 272 87 56 chr3_random 4518463 4518786 -3909495 - MLT1H LTR MaLR -215 334 2 262 265 48 36 chr3_random 4518792 4518875 -3909406 - L2 LINE L2 -1 3271 3188 543 153 0 12 chr3_random 4518895 4518980 -3909301 - MSTD LTR MaLR -312 84 1 437 265 130 22 chr3_random 4519344 4519529 -3908752 - L2 LINE L2 -4 3309 3105 577 144 0 27 chr3_random 4520765 4520876 -3907405 + L1MC2 LINE L1 6236 6343 -1 186 327 73 67 chr3_random 4522143 4522293 -3905988 + MIR3 SINE MIR 51 201 -7 22 0 0 0 chr3_random 4523535 4523557 -3904724 + AT_rich Low_complexity Low_complexity 1 22 0 573 302 91 52 chr3_random 4524766 4525173 -3903108 - L2 LINE L2 -4 3309 2887 228 167 0 48 chr3_random 4526018 4526060 -3902221 + MIR3 SINE MIR 121 160 -48 500 310 40 14 chr3_random 4526308 4526583 -3901698 - L1MC4a LINE L1 -416 5826 5636 330 211 105 26 chr3_random 4526708 4526822 -3901459 + MER5A DNA MER1_type 67 189 0 383 252 31 75 chr3_random 4527384 4527465 -3900816 - MIR SINE MIR -89 173 101 2170 96 20 10 chr3_random 4527465 4527768 -3900513 + AluSq SINE Alu 2 307 -6 383 252 31 75 chr3_random 4527768 4527845 -3900436 - MIR SINE MIR -161 101 22 1208 179 198 22 chr3_random 4528465 4528783 -3899498 + MLT1A2 LTR MaLR 1 374 0 243 288 0 0 chr3_random 4528886 4528959 -3899322 + L1MC4 LINE L1 7933 8005 -37 245 324 95 0 chr3_random 4529212 4529317 -3898964 - MLT1I LTR MaLR -197 212 98 2292 63 7 3 chr3_random 4529469 4529755 -3898526 + AluY SINE Alu 1 287 -24 22 0 0 0 chr3_random 4529756 4529778 -3898503 + AT_rich Low_complexity Low_complexity 1 22 0 2307 98 0 3 chr3_random 4529978 4530285 -3897996 + AluSp SINE Alu 1 306 -7 230 81 27 0 chr3_random 4530647 4530684 -3897597 + (TA)n Simple_repeat Simple_repeat 2 39 0 816 117 8 0 chr3_random 4532281 4532401 -3895880 + MER57A LTR ERV1 1 121 -282 1844 176 91 3 chr3_random 4532440 4532804 -3895477 + MER57A LTR ERV1 8 403 0 2874 149 44 39 chr3_random 4533022 4533477 -3894804 + MER34C LTR ERV1 13 473 -112 1350 177 155 22 chr3_random 4533477 4533799 -3894482 + MLT1A1 LTR MaLR 1 365 0 2874 149 44 39 chr3_random 4533799 4533913 -3894368 + MER34C LTR ERV1 473 585 0 3318 115 24 8 chr3_random 4534052 4534547 -3893734 + MER84 LTR ERV1 1 503 -4 565 313 60 0 chr3_random 4534636 4534802 -3893479 + LTR67 LTR ERVL 53 228 -329 28 48 0 0 chr3_random 4536181 4536223 -3892058 + AT_rich Low_complexity Low_complexity 1 42 0 1517 279 34 12 chr3_random 4536751 4537257 -3891024 - LTR40a LTR ERVL -2 517 1 569 172 0 10 chr3_random 4537738 4537837 -3890444 + 7SLRNA srpRNA srpRNA 219 316 -4 1450 209 3 33 chr3_random 4537856 4538158 -3890123 + AluJo SINE Alu 1 293 -19 23 33 0 0 chr3_random 4538366 4538396 -3889885 + AT_rich Low_complexity Low_complexity 1 30 0 3029 241 35 32 chr3_random 4538483 4539809 -3888472 - L1ME1 LINE L1 -5 6161 4841 3288 196 30 7 chr3_random 4539821 4540429 -3887852 - MER21B LTR ERV1 -14 849 228 2011 198 43 8 chr3_random 4540430 4540829 -3887452 - MSTB LTR MaLR -13 413 1 968 237 20 15 chr3_random 4540829 4541024 -3887257 - MER21B LTR ERV1 -653 210 15 239 229 0 0 chr3_random 4541003 4541064 -3887217 - LTR66 LTR ERVL -156 454 394 * 971 234 73 3 chr3_random 4541148 4541477 -3886804 - L1ME1 LINE L1 -1443 4703 4352 7503 222 38 40 chr3_random 4541781 4544473 -3883808 + L1MB1 LINE L1 4 2700 -4508 652 205 8 0 chr3_random 4544473 4544590 -3883691 + FLAM_C SINE Alu 1 118 -15 7503 222 38 40 chr3_random 4544590 4546648 -3881633 + L1MB1 LINE L1 2700 5454 -1754 1652 169 160 6 chr3_random 4546650 4546969 -3881312 - MSTA LTR MaLR -60 368 1 428 139 0 13 chr3_random 4546969 4547048 -3881233 - MSTA-int LTR MaLR 0 1651 1574 2058 145 21 8 chr3_random 4547049 4547429 -3880852 + L1MA5 LINE L1 5915 6299 -1 1175 221 118 63 chr3_random 4547460 4547953 -3880328 - MER34C LTR ERV1 -65 520 1 814 247 65 9 chr3_random 4547953 4548182 -3880099 - LTR16C LTR ERVL -48 443 202 1587 194 0 0 chr3_random 4548260 4548553 -3879728 - L1MB1 LINE L1 -7 6161 5869 359 125 62 0 chr3_random 4548581 4548661 -3879620 + L1MB1 LINE L1 6179 6263 -945 784 181 0 0 chr3_random 4548662 4548800 -3879481 + AluJb SINE Alu 1 138 -174 30 0 0 0 chr3_random 4548820 4548850 -3879431 + AT_rich Low_complexity Low_complexity 1 30 0 2977 172 48 8 chr3_random 4548853 4549428 -3878853 + L1MB1 LINE L1 6253 6862 -368 423 0 0 0 chr3_random 4549428 4549475 -3878806 + (TA)n Simple_repeat Simple_repeat 1 47 0 2977 172 48 8 chr3_random 4549475 4549568 -3878713 + L1MB1 LINE L1 6862 6950 -280 2494 243 70 13 chr3_random 4549557 4550323 -3877958 - L1MEc LINE L1 -1813 4402 3593 * 242 269 17 25 chr3_random 4550344 4550463 -3877818 - L1MEc LINE L1 -2715 3500 3383 3689 251 103 40 chr3_random 4550470 4551118 -3877163 - L1MEc LINE L1 -4329 2067 1461 360 0 0 0 chr3_random 4551118 4551158 -3877123 + (TG)n Simple_repeat Simple_repeat 2 41 0 3689 251 103 40 chr3_random 4551158 4552421 -3875860 - L1MEc LINE L1 -4935 1461 36 21 0 0 0 chr3_random 4552571 4552592 -3875689 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3_random 4552629 4552650 -3875631 + AT_rich Low_complexity Low_complexity 1 21 0 1670 136 19 50 chr3_random 4552682 4552999 -3875282 + L1MA6 LINE L1 5994 6300 0 201 167 0 21 chr3_random 4553629 4553652 -3874629 + (TAA)n Simple_repeat Simple_repeat 1 23 -24 2122 118 3 0 chr3_random 4553652 4553941 -3874340 + AluY SINE Alu 1 290 -21 201 167 0 21 chr3_random 4553941 4553965 -3874316 + (TAA)n Simple_repeat Simple_repeat 23 47 0 590 137 0 8 chr3_random 4554381 4554490 -3873791 + (TC)n Simple_repeat Simple_repeat 2 111 -13 297 118 0 0 chr3_random 4554490 4554541 -3873740 + (CA)n Simple_repeat Simple_repeat 1 51 0 590 137 0 8 chr3_random 4554541 4554555 -3873726 + (TC)n Simple_repeat Simple_repeat 111 124 0 207 0 0 0 chr3_random 4554672 4554695 -3873586 + (A)n Simple_repeat Simple_repeat 1 23 0 776 250 6 17 chr3_random 4554967 4555143 -3873138 + MER58A DNA MER1_type 6 179 -45 2427 161 43 9 chr3_random 4555706 4556167 -3872114 + L1MB7 LINE L1 5595 6071 -113 1319 140 85 13 chr3_random 4556167 4556586 -3871695 + LTR54 LTR ERV1 1 510 0 654 125 18 0 chr3_random 4556587 4556699 -3871582 + L1MB7 LINE L1 6069 6182 -2 732 222 32 83 chr3_random 4556792 4557179 -3871102 - L1MC5 LINE L1 -746 7215 6886 345 111 0 0 chr3_random 4557179 4557242 -3871039 - Tigger2 DNA MER2_type -195 2523 2461 4502 154 12 8 chr3_random 4557295 4558049 -3870232 - Tigger2 DNA MER2_type -1961 757 1 1013 267 71 41 chr3_random 4558091 4558559 -3869722 - L1ME LINE L1 -4548 2015 1385 311 262 79 16 chr3_random 4558867 4558993 -3869288 - L1MC4a LINE L1 -1777 6031 5898 320 245 31 0 chr3_random 4558995 4559093 -3869188 - L1MC4a LINE L1 -1971 5837 5737 1220 259 46 12 chr3_random 4559110 4559435 -3868846 - MLT1E3 LTR MaLR 0 624 289 437 307 90 47 chr3_random 4559678 4560101 -3868180 + LTR67 LTR ERVL 63 503 -54 463 295 86 70 chr3_random 4562062 4562717 -3865564 - Charlie4 DNA MER1_type -797 1164 500 348 265 37 37 chr3_random 4563742 4563904 -3864377 - LTR33A LTR ERVL -2 521 360 225 287 32 21 chr3_random 4564052 4564146 -3864135 - LTR33A LTR ERVL -371 152 58 554 231 25 50 chr3_random 4566274 4566434 -3861847 + MER5A DNA MER1_type 33 188 -1 41 0 0 0 chr3_random 4566689 4566730 -3861551 + AT_rich Low_complexity Low_complexity 1 41 0 354 162 40 0 chr3_random 4566932 4567006 -3861275 - L1 LINE L1 -873 5273 5197 739 156 7 22 chr3_random 4567024 4567159 -3861122 - FLAM_C SINE Alu 0 133 1 9451 188 30 51 chr3_random 4567178 4569749 -3858532 - L1PA16 LINE L1 -2 6164 3686 423 0 0 0 chr3_random 4569749 4569796 -3858485 + (TG)n Simple_repeat Simple_repeat 2 48 0 9451 188 30 51 chr3_random 4569796 4570647 -3857634 - L1PA16 LINE L1 -2480 3686 2819 881 197 67 4 chr3_random 4570650 4570889 -3857392 - L1 LINE L1 -949 5197 4944 341 293 17 52 chr3_random 4571722 4571896 -3856385 - L1ME LINE L1 -5857 515 348 207 0 0 0 chr3_random 4572243 4572266 -3856015 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1472 233 53 48 chr3_random 4572352 4572808 -3855473 - LTR40a LTR ERVL -61 458 1 479 359 94 24 chr3_random 4573319 4573734 -3854547 - L2 LINE L2 -23 3290 2847 1506 187 5 101 chr3_random 4575210 4575292 -3852989 + MLT1A2 LTR MaLR 4 92 -282 2213 112 0 0 chr3_random 4575292 4575588 -3852693 + AluSx SINE Alu 1 296 -16 1506 187 5 101 chr3_random 4575588 4575911 -3852370 + MLT1A2 LTR MaLR 92 370 -4 2006 94 0 4 chr3_random 4576791 4577056 -3851225 + AluSx SINE Alu 37 300 -12 222 37 0 0 chr3_random 4578460 4578487 -3849794 + (CA)n Simple_repeat Simple_repeat 2 28 0 853 192 7 7 chr3_random 4578589 4578740 -3849541 + FRAM SINE Alu 2 152 -24 388 264 47 90 chr3_random 4578845 4579057 -3849224 + MIR SINE MIR 47 249 -13 2285 193 33 0 chr3_random 4579249 4579701 -3848580 - MLT1C LTR MaLR 0 467 1 1686 134 4 0 chr3_random 4580566 4580819 -3847462 - AluSx SINE Alu -1 311 58 513 104 0 0 chr3_random 4581063 4581140 -3847141 + (TCCCC)n Simple_repeat Simple_repeat 5 81 0 2279 96 3 6 chr3_random 4581142 4581454 -3846827 - AluSq SINE Alu -2 311 1 204 97 0 0 chr3_random 4581603 4581634 -3846647 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 248 367 69 4 chr3_random 4582086 4582331 -3845950 - L1ME4a LINE L1 -194 5927 5667 401 322 123 9 chr3_random 4582503 4582730 -3845551 - L1ME4a LINE L1 -2251 5557 5305 23 0 0 0 chr3_random 4582730 4582753 -3845528 + AT_rich Low_complexity Low_complexity 1 23 0 573 288 119 31 chr3_random 4583362 4583907 -3844374 - L2 LINE L2 -37 3276 2687 1103 29 0 14 chr3_random 4583907 4584045 -3844236 + AluY SINE Alu 174 309 -2 572 313 0 0 chr3_random 4584045 4584179 -3844102 - L2 LINE L2 -617 2697 2564 1371 276 205 3 chr3_random 4584225 4584860 -3843421 - L2 LINE L2 -1014 2300 1538 1333 101 0 0 chr3_random 4584935 4585143 -3843138 + L1MA8 LINE L1 6079 6286 -5 566 288 119 31 chr3_random 4585810 4586164 -3842117 + L2 LINE L2 2928 3312 -1 460 133 44 0 chr3_random 4586231 4586321 -3841960 + MER53 DNA DNA 96 189 0 1704 84 8 0 chr3_random 4586330 4586567 -3841714 + L1PB1 LINE L1 5913 6151 0 538 236 36 0 chr3_random 4586939 4587079 -3841202 - L1MC3 LINE L1 -9 7776 7632 802 200 35 0 chr3_random 4587301 4587471 -3840810 + MER20 DNA MER1_type 40 215 -4 7673 79 6 24 chr3_random 4589077 4590168 -3838113 + MER11C LTR ERVK 1 1071 0 462 49 0 0 chr3_random 4592077 4592138 -3836143 + (CA)n Simple_repeat Simple_repeat 1 61 0 28 29 0 0 chr3_random 4592260 4592295 -3835986 + AT_rich Low_complexity Low_complexity 1 35 0 232 205 0 26 chr3_random 4592775 4592853 -3835428 + GA-rich Low_complexity Low_complexity 4 79 0 456 252 224 7 chr3_random 4593021 4593164 -3835117 - MER5A DNA MER1_type 0 189 16 1112 186 24 5 chr3_random 4593233 4593443 -3834838 - MER20 DNA MER1_type -3 216 3 276 269 15 0 chr3_random 4594731 4594798 -3833483 + L2 LINE L2 3246 3313 0 1641 173 70 6 chr3_random 4594866 4595057 -3833224 + MER67B LTR ERV1 1 178 -483 2205 184 68 80 chr3_random 4595057 4595612 -3832669 + LTR48B LTR ERV1 1 548 -96 1651 210 3 0 chr3_random 4595612 4595898 -3832383 - AluJb SINE Alu -25 287 1 2205 184 68 80 chr3_random 4595898 4595994 -3832287 + LTR48B LTR ERV1 548 644 0 1641 173 70 6 chr3_random 4595994 4596143 -3832138 + MER67B LTR ERV1 178 363 -298 521 160 137 30 chr3_random 4596136 4596267 -3832014 + MER67B LTR ERV1 390 534 -127 * 455 218 73 8 chr3_random 4596269 4596393 -3831888 + L1MA10 LINE L1 6192 6323 -11 614 143 59 0 chr3_random 4596495 4596614 -3831667 + MER67B LTR ERV1 536 661 0 309 297 22 0 chr3_random 4597055 4597146 -3831135 - MIR3 SINE MIR -4 204 112 342 266 85 0 chr3_random 4597234 4597328 -3830953 - MIR SINE MIR -112 150 49 285 246 0 0 chr3_random 4597986 4598047 -3830234 + MIR SINE MIR 84 144 -64 2010 131 0 3 chr3_random 4598157 4598474 -3829807 - AluSx SINE Alu 0 316 1 737 203 37 12 chr3_random 4600375 4600538 -3827743 - MLT1A1 LTR MaLR -2 363 197 326 209 121 3 chr3_random 4600663 4600781 -3827500 - MLT1A1 LTR MaLR -256 109 1 1762 148 168 21 chr3_random 4601617 4602051 -3826230 - LTR54B LTR ERV1 0 498 1 2593 147 14 2 chr3_random 4602555 4602976 -3825305 - MSTC LTR MaLR -2 426 1 189 0 0 0 chr3_random 4604822 4604843 -3823438 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1494 206 140 52 chr3_random 4605798 4606390 -3821891 - LTR48B LTR ERV1 0 644 1 17730 137 18 1 chr3_random 4606403 4610185 -3818096 - L1PA10 LINE L1 0 6168 2338 1181 213 121 45 chr3_random 4610381 4610977 -3817304 + L1MC5 LINE L1 7314 7954 -7 836 266 14 29 chr3_random 4611111 4611373 -3816908 + MIR SINE MIR 9 261 -1 243 263 35 0 chr3_random 4611400 4611457 -3816824 - L2 LINE L2 -252 3061 3003 198 317 50 68 chr3_random 4611545 4611649 -3816632 - L2 LINE L2 -444 2870 2766 368 263 76 23 chr3_random 4611649 4611820 -3816461 + MER104 DNA MER2_type 1 180 0 198 317 50 68 chr3_random 4611820 4611936 -3816345 - L2 LINE L2 -548 2766 2654 287 274 15 59 chr3_random 4611974 4612109 -3816172 - LTR67 LTR ERVL -75 482 354 273 253 44 33 chr3_random 4612272 4612363 -3815918 - LTR67 LTR ERVL -421 136 45 1429 126 169 49 chr3_random 4612541 4612866 -3815415 + THE1B LTR MaLR 1 364 0 236 208 21 0 chr3_random 4613136 4613184 -3815097 + CT-rich Low_complexity Low_complexity 2 50 0 341 316 102 37 chr3_random 4613353 4613540 -3814741 + MIR SINE MIR 20 218 -44 1547 269 123 36 chr3_random 4613969 4614790 -3813491 + L2 LINE L2 1480 2371 -943 576 221 89 63 chr3_random 4615001 4615191 -3813090 + MIR SINE MIR 66 260 -2 394 294 81 7 chr3_random 4616674 4616810 -3811471 - MIR3 SINE MIR -58 150 5 392 348 37 7 chr3_random 4617097 4617232 -3811049 + MIR3 SINE MIR 16 154 -54 1401 233 68 21 chr3_random 4617258 4617687 -3810594 + L1ME2 LINE L1 5716 6164 0 253 298 75 11 chr3_random 4618151 4618245 -3810036 - MIR SINE MIR -81 181 82 631 294 77 13 chr3_random 4618411 4618646 -3809635 - MIR SINE MIR 0 262 13 281 214 10 7 chr3_random 4619184 4619297 -3808984 - MER5A DNA MER1_type 0 189 2 206 250 0 0 chr3_random 4619315 4619355 -3808926 - L3 LINE CR1 -103 1474 1435 188 296 88 96 chr3_random 4620069 4620194 -3808087 - L3 LINE CR1 -301 1276 1153 277 228 109 20 chr3_random 4620245 4620346 -3807935 + L2 LINE L2 3185 3294 -19 22 0 0 0 chr3_random 4620938 4620960 -3807321 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3_random 4621971 4621993 -3806288 + AT_rich Low_complexity Low_complexity 1 22 0 1395 158 18 22 chr3_random 4622162 4622440 -3805841 + L1PA16 LINE L1 5889 6165 -1 4094 173 27 21 chr3_random 4625010 4626436 -3801845 + L1MB7 LINE L1 4425 5854 -330 255 133 22 0 chr3_random 4626504 4626549 -3801732 - L2 LINE L2 0 3313 3268 1383 170 0 15 chr3_random 4626571 4626830 -3801451 + L1MB7 LINE L1 5860 6114 -70 2027 117 11 0 chr3_random 4627781 4628063 -3800218 + AluSx SINE Alu 1 285 -27 351 0 0 0 chr3_random 4628064 4628103 -3800178 + (CA)n Simple_repeat Simple_repeat 2 40 0 323 299 0 0 chr3_random 4628136 4628213 -3800068 + GA-rich Low_complexity Low_complexity 1 77 0 270 261 43 0 chr3_random 4628291 4628360 -3799921 - MIR SINE MIR -17 245 174 607 313 116 9 chr3_random 4628360 4628584 -3799697 - MIR SINE MIR 0 262 15 191 287 149 0 chr3_random 4628737 4628831 -3799450 + MIR SINE MIR 79 186 -76 2306 101 3 0 chr3_random 4628960 4629257 -3799024 - AluSp SINE Alu -11 302 5 1927 143 40 28 chr3_random 4629662 4629764 -3798517 + L1MB3 LINE L1 5736 5835 -348 1999 147 14 46 chr3_random 4629764 4630112 -3798169 - MER1B DNA MER1_type 0 337 1 1927 143 40 28 chr3_random 4630112 4630407 -3797874 + L1MB3 LINE L1 5835 6138 -45 478 332 61 20 chr3_random 4631665 4631861 -3796420 - MIR SINE MIR -49 213 10 461 261 183 54 chr3_random 4632432 4632950 -3795331 - L1M4 LINE L1 -2810 3336 2752 1198 180 9 9 chr3_random 4632950 4633172 -3795109 + AluJo SINE Alu 83 304 -8 24 67 0 0 chr3_random 4636606 4636651 -3791630 + AT_rich Low_complexity Low_complexity 1 45 0 1676 256 50 2 chr3_random 4636912 4637349 -3790932 + L1M4b LINE L1 9 466 -6393 667 210 25 35 chr3_random 4637357 4637557 -3790724 + L1MB8 LINE L1 5285 5482 -702 568 131 9 9 chr3_random 4637557 4637664 -3790617 + (GAAA)n Simple_repeat Simple_repeat 3 109 0 2761 165 45 64 chr3_random 4637664 4638192 -3790089 + L1MB8 LINE L1 5476 5988 -190 2757 3 0 0 chr3_random 4638192 4638490 -3789791 + AluYa5 SINE Alu 1 298 -13 2761 165 45 64 chr3_random 4638490 4638678 -3789603 + L1MB8 LINE L1 5988 6178 0 26 30 0 0 chr3_random 4639662 4639695 -3788586 + AT_rich Low_complexity Low_complexity 1 33 0 2244 108 3 16 chr3_random 4639708 4640024 -3788257 - AluSq SINE Alu -1 312 1 299 224 265 85 chr3_random 4640109 4640332 -3787949 - L2 LINE L2 0 3313 3051 332 118 0 0 chr3_random 4641278 4641329 -3786952 - L2 LINE L2 0 3313 3263 188 229 48 72 chr3_random 4641547 4641630 -3786651 + L2 LINE L2 3169 3249 -64 232 308 43 17 chr3_random 4641698 4641815 -3786466 + MIR SINE MIR 143 262 0 35 0 0 0 chr3_random 4642215 4642250 -3786031 + AT_rich Low_complexity Low_complexity 1 35 0 239 279 16 0 chr3_random 4643019 4643080 -3785201 + L2 LINE L2 3210 3271 -1 25 31 0 0 chr3_random 4643319 4643351 -3784930 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3_random 4643947 4643975 -3784306 + AT_rich Low_complexity Low_complexity 1 28 0 266 319 90 21 chr3_random 4645238 4645382 -3782899 - MIR SINE MIR -18 244 91 606 301 210 35 chr3_random 4645507 4646332 -3781949 - L3 LINE CR1 -14 1563 595 263 336 61 0 chr3_random 4646375 4646506 -3781775 - MIR SINE MIR -56 206 68 380 344 32 32 chr3_random 4646959 4647113 -3781168 - MIR3 SINE MIR -13 195 42 820 262 107 0 chr3_random 4648360 4648593 -3779688 - MIR SINE MIR -1 261 4 242 135 0 0 chr3_random 4648645 4648682 -3779599 + MIR SINE MIR 114 150 -112 807 164 0 8 chr3_random 4648738 4648872 -3779409 + FLAM_A SINE Alu 1 133 0 937 244 195 21 chr3_random 4648937 4649367 -3778914 - MLT1D LTR MaLR 0 505 1 907 185 0 0 chr3_random 4649908 4650059 -3778222 - AluJb SINE Alu -2 310 160 2683 126 55 2 chr3_random 4651066 4651519 -3776762 - L1MB2 LINE L1 -4 6167 5691 1694 180 3 14 chr3_random 4652272 4652567 -3775714 + AluJb SINE Alu 1 292 -20 222 171 24 0 chr3_random 4653346 4653387 -3774894 - MER91 DNA MER1_type -154 42 1 277 312 43 45 chr3_random 4653742 4653910 -3774371 - MIR SINE MIR -38 170 22 23 0 0 0 chr3_random 4654090 4654113 -3774168 + AT_rich Low_complexity Low_complexity 1 23 0 224 314 70 0 chr3_random 4654335 4654421 -3773860 - L2 LINE L2 -54 3218 3127 293 320 194 0 chr3_random 4654661 4654883 -3773398 - L2 LINE L2 -453 2861 2597 512 214 0 0 chr3_random 4654892 4654995 -3773286 + MER3 DNA MER1_type 1 103 -106 264 208 0 0 chr3_random 4654993 4655041 -3773240 + MER3 DNA MER1_type 162 209 0 * 476 184 75 86 chr3_random 4655205 4655290 -3772991 - MER112 DNA MER1_type -85 175 91 231 36 0 0 chr3_random 4655290 4655318 -3772963 + (TC)n Simple_repeat Simple_repeat 2 29 0 476 184 75 86 chr3_random 4655318 4655406 -3772875 - MER112 DNA MER1_type -169 91 4 3184 161 14 25 chr3_random 4655554 4656187 -3772094 - L1MC1 LINE L1 -1 7763 6132 180 195 24 0 chr3_random 4657796 4657837 -3770444 + L2 LINE L2 3272 3313 0 589 214 0 23 chr3_random 4658404 4658535 -3769746 - MLT1E LTR MaLR -41 552 425 525 196 0 68 chr3_random 4658595 4658769 -3769512 - FLAM_A SINE Alu 0 133 5 1578 121 44 50 chr3_random 4659018 4659316 -3768965 - AluSq SINE Alu -16 297 2 2003 146 7 13 chr3_random 4659348 4659650 -3768631 + AluSx SINE Alu 4 303 -9 194 315 95 41 chr3_random 4659881 4660183 -3768098 + L2 LINE L2 2725 3036 -236 29 84 0 0 chr3_random 4660370 4660441 -3767840 + AT_rich Low_complexity Low_complexity 1 71 0 240 308 23 77 chr3_random 4662286 4662416 -3765865 - MIR SINE MIR -96 166 44 192 365 16 0 chr3_random 4663858 4663921 -3764360 - L2 LINE L2 -30 3242 3179 1392 109 21 17 chr3_random 4664248 4664487 -3763794 + LTR49 LTR ERV1 356 595 0 600 199 68 62 chr3_random 4665076 4665252 -3763029 + MER5B DNA MER1_type 1 177 -1 268 200 25 0 chr3_random 4665831 4665911 -3762370 + (TA)n Simple_repeat Simple_repeat 2 83 0 4967 139 20 22 chr3_random 4666031 4666961 -3761320 - L1PA16 LINE L1 -17 6149 5222 297 255 78 0 chr3_random 4667032 4667134 -3761147 + MIR SINE MIR 35 144 -64 981 220 38 14 chr3_random 4667552 4667761 -3760520 - MIR SINE MIR -3 259 46 252 388 0 0 chr3_random 4667982 4668062 -3760219 - L2 LINE L2 -213 3059 2980 233 264 69 0 chr3_random 4669784 4669856 -3758425 + MIR SINE MIR 152 228 -34 186 200 164 18 chr3_random 4669833 4669888 -3758393 + L2 LINE L2 3210 3272 0 * 263 215 77 15 chr3_random 4670476 4670541 -3757740 + L2 LINE L2 3203 3271 -1 3177 206 25 17 chr3_random 4671185 4671955 -3756326 - L1MC4a LINE L1 0 7808 7033 2248 84 0 53 chr3_random 4671983 4672339 -3755942 - L1MA3 LINE L1 -2 6303 5967 265 263 40 0 chr3_random 4672444 4672520 -3755761 + GA-rich Low_complexity Low_complexity 1 79 0 2632 23 3 0 chr3_random 4673641 4673940 -3754341 - AluY SINE Alu -11 300 1 240 211 0 0 chr3_random 4674024 4674081 -3754200 + (TA)n Simple_repeat Simple_repeat 1 57 0 291 161 0 36 chr3_random 4674228 4674284 -3753997 + MIR SINE MIR 88 141 -67 517 265 61 33 chr3_random 4674549 4674730 -3753551 + MIR SINE MIR 20 205 -57 263 284 128 14 chr3_random 4674730 4674871 -3753410 + LTR33 LTR ERVL 344 500 -21 197 313 0 0 chr3_random 4675384 4675432 -3752849 + L2 LINE L2 2719 2766 -548 934 215 68 23 chr3_random 4675446 4675665 -3752616 - MIR SINE MIR -21 241 13 201 39 0 0 chr3_random 4675811 4675837 -3752444 + (A)n Simple_repeat Simple_repeat 1 26 0 304 286 41 0 chr3_random 4677484 4677582 -3750699 + L1ME LINE L1 5749 5850 -320 3532 183 14 0 chr3_random 4678428 4679134 -3749147 + L1 LINE L1 4559 5274 -872 240 224 119 0 chr3_random 4679140 4679207 -3749074 + Charlie8 DNA MER1_type 393 467 -1950 539 231 91 117 chr3_random 4679496 4679890 -3748391 + MLT1J LTR MaLR 109 492 -19 458 276 152 0 chr3_random 4681456 4681601 -3746680 - Charlie8 DNA MER1_type -2183 234 68 21 0 0 0 chr3_random 4682858 4682879 -3745402 + AT_rich Low_complexity Low_complexity 1 21 0 21569 158 22 18 chr3_random 4683331 4683844 -3744437 - L1 LINE L1 -3427 4138 3629 180 77 0 0 chr3_random 4683844 4683870 -3744411 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21569 158 22 18 chr3_random 4683870 4687444 -3740837 - L1 LINE L1 -3936 3629 16 811 153 0 29 chr3_random 4687738 4687875 -3740406 - FLAM_A SINE Alu 0 133 1 739 258 116 0 chr3_random 4688238 4688436 -3739845 + MIR SINE MIR 7 227 -35 317 136 291 58 chr3_random 4688460 4688563 -3739718 + L2 LINE L2 3187 3313 0 2650 115 15 86 chr3_random 4688579 4688799 -3739482 - MER65A LTR ERV1 0 445 276 784 172 39 0 chr3_random 4688799 4688927 -3739354 + FLAM_A SINE Alu 1 133 0 2650 115 15 86 chr3_random 4688927 4689185 -3739096 - MER65A LTR ERV1 -169 276 1 574 229 28 0 chr3_random 4690803 4690912 -3737369 - MER81 DNA DNA -2 112 1 683 245 138 93 chr3_random 4690999 4691383 -3736898 - MLT1G1 LTR MaLR 0 595 125 1943 174 103 59 chr3_random 4691383 4691765 -3736516 - MSTB2 LTR MaLR 0 457 52 2567 65 0 0 chr3_random 4691765 4692072 -3736209 - AluY SINE Alu -4 307 1 1943 174 103 59 chr3_random 4692072 4692127 -3736154 - MSTB2 LTR MaLR -405 52 1 683 245 138 93 chr3_random 4692127 4692258 -3736023 - MLT1G1 LTR MaLR -470 125 1 1805 169 0 13 chr3_random 4693157 4693464 -3734817 + AluJo SINE Alu 1 303 -9 1674 153 0 83 chr3_random 4693499 4693826 -3734455 + AluJo SINE Alu 2 301 -11 443 291 114 6 chr3_random 4694758 4694933 -3733348 + L2 LINE L2 2887 3080 -233 322 247 87 27 chr3_random 4694996 4695146 -3733135 + L2 LINE L2 2369 2527 -787 324 304 114 23 chr3_random 4695247 4695510 -3732771 + L2 LINE L2 2481 2767 -547 461 296 148 46 chr3_random 4695552 4695923 -3732358 + L2 LINE L2 2880 3288 -25 260 351 0 0 chr3_random 4695994 4696068 -3732213 + MIR3 SINE MIR 109 182 -26 16177 129 30 1 chr3_random 4696746 4699095 -3729186 - Tigger1 DNA MER2_type 0 2418 1 253 356 22 44 chr3_random 4699224 4699359 -3728922 + L2 LINE L2 2959 3090 -182 234 0 0 0 chr3_random 4699626 4699652 -3728629 + (TTG)n Simple_repeat Simple_repeat 2 27 0 243 0 0 0 chr3_random 4699771 4699798 -3728483 + (A)n Simple_repeat Simple_repeat 1 27 0 1849 145 44 3 chr3_random 4700751 4701047 -3727234 - AluSx SINE Alu -4 308 1 410 74 0 0 chr3_random 4701562 4701616 -3726665 - AluSp/q SINE Alu -16 297 244 378 287 37 9 chr3_random 4701795 4701903 -3726378 - L2 LINE L2 -9 3263 3153 1778 176 0 3 chr3_random 4702512 4702807 -3725474 + AluJo SINE Alu 1 294 -18 1846 121 73 0 chr3_random 4703975 4704248 -3724033 + AluSp SINE Alu 1 293 -20 425 267 102 67 chr3_random 4704462 4704747 -3723534 - L2 LINE L2 0 3313 3019 998 112 31 6 chr3_random 4704747 4704908 -3723373 - MER65A LTR ERV1 0 445 281 446 130 14 0 chr3_random 4704908 4704977 -3723304 - AluSp/q SINE Alu -11 302 233 370 251 233 37 chr3_random 4705281 4705496 -3722785 + MIR SINE MIR 6 262 0 262 217 100 0 chr3_random 4706082 4706142 -3722139 + MIR SINE MIR 122 187 -75 782 174 0 0 chr3_random 4706847 4706968 -3721313 - AluJb SINE Alu -190 122 2 6207 152 8 10 chr3_random 4707060 4708893 -3719388 - L1PA15 LINE L1 -23 6142 4316 1809 163 3 7 chr3_random 4708893 4709194 -3719087 + AluSx SINE Alu 1 300 -12 1007 221 50 5 chr3_random 4710025 4710332 -3717949 - MER20B DNA MER1_type -59 724 358 749 227 0 0 chr3_random 4710332 4710460 -3717821 + FAM SINE Alu 29 156 -29 342 0 0 0 chr3_random 4710461 4710499 -3717782 + (TTA)n Simple_repeat Simple_repeat 2 39 0 6025 82 16 14 chr3_random 4710499 4711011 -3717270 - L1PB1 LINE L1 -10 6141 5632 2276 123 7 0 chr3_random 4711011 4711321 -3716960 - AluSx SINE Alu 0 312 1 6025 82 16 14 chr3_random 4711321 4712009 -3716272 - L1PB1 LINE L1 -519 5632 4900 1964 177 42 30 chr3_random 4712014 4712560 -3715721 + MLT2A2 LTR ERVL 1 554 0 12180 193 8 43 chr3_random 4712563 4714058 -3714223 - L1PBa LINE L1 -1249 5613 4067 2032 122 0 4 chr3_random 4714058 4714336 -3713945 + AluSg SINE Alu 14 290 -20 12180 193 8 43 chr3_random 4714336 4714351 -3713930 - L1PBa LINE L1 -2795 4067 4053 2079 136 3 7 chr3_random 4714351 4714653 -3713628 + AluSx SINE Alu 1 301 -11 12180 193 8 43 chr3_random 4714653 4715934 -3712347 - L1PBa LINE L1 -2809 4053 2920 523 261 55 25 chr3_random 4716034 4716394 -3711887 - MLT1F LTR MaLR -94 501 1 250 206 29 44 chr3_random 4716400 4716468 -3711813 - L1ME LINE L1 -513 5608 5542 25 0 0 0 chr3_random 4716474 4716499 -3711782 + AT_rich Low_complexity Low_complexity 1 25 0 227 302 163 8 chr3_random 4717071 4717200 -3711081 + MIR SINE MIR 92 240 -22 368 299 34 57 chr3_random 4717574 4717751 -3710530 - MIR SINE MIR -23 239 67 641 105 48 9 chr3_random 4717995 4718100 -3710181 - LOR1b LTR ERV1 -332 129 21 356 285 15 8 chr3_random 4718100 4718230 -3710051 + MIR SINE MIR 118 248 -14 765 261 169 19 chr3_random 4718498 4718919 -3709362 - L1ME4a LINE L1 -112 6009 5526 2001 117 53 0 chr3_random 4719383 4719665 -3708616 + AluSp SINE Alu 1 297 -16 3507 127 4 4 chr3_random 4719675 4720172 -3708109 - LOR1a LTR ERV1 0 497 1 2371 99 0 3 chr3_random 4720675 4720987 -3707294 + AluSq SINE Alu 1 311 -2 232 313 27 75 chr3_random 4721287 4721434 -3706847 - MIR SINE MIR -121 141 2 1014 245 83 51 chr3_random 4721470 4721842 -3706439 + L2 LINE L2 2922 3305 -8 318 314 7 29 chr3_random 4721919 4722059 -3706222 - L2 LINE L2 -256 3057 2921 21 0 0 0 chr3_random 4722182 4722203 -3706078 + AT_rich Low_complexity Low_complexity 1 21 0 362 282 92 40 chr3_random 4722206 4722380 -3705901 + L2 LINE L2 3129 3311 -2 240 159 23 0 chr3_random 4722391 4722435 -3705846 - L2 LINE L2 -4 3309 3265 1939 130 25 0 chr3_random 4723302 4723587 -3704694 - AluSc SINE Alu -17 292 1 1339 180 29 0 chr3_random 4723980 4724219 -3704062 - L1MB5 LINE L1 0 6174 5929 1489 139 129 7 chr3_random 4724219 4724499 -3703782 + THE1C LTR MaLR 7 320 -55 2655 184 15 0 chr3_random 4724510 4724984 -3703297 - L1MB5 LINE L1 -52 6122 5642 4205 201 102 20 chr3_random 4724988 4726176 -3702105 + L1MD2 LINE L1 4849 6170 -189 237 65 0 0 chr3_random 4726176 4726207 -3702074 + (CA)n Simple_repeat Simple_repeat 2 32 0 4205 201 102 20 chr3_random 4726207 4726404 -3701877 + L1MD2 LINE L1 6170 6349 -10 905 202 82 6 chr3_random 4726433 4726540 -3701741 + AluJo SINE Alu 14 111 -201 198 0 51 51 chr3_random 4726540 4726579 -3701702 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 905 202 82 6 chr3_random 4726579 4726654 -3701627 + AluJo SINE Alu 111 210 -102 997 145 6 0 chr3_random 4726665 4726824 -3701457 - AluSp/q SINE Alu 0 313 154 983 142 4 7 chr3_random 4926828 4927184 -3501097 + (GAATG)n Satellite Satellite 3 530 0 1221 93 0 14 chr3_random 4927226 4927589 -3500692 + (GAATG)n Satellite Satellite 2 533 0 195 125 0 0 chr3_random 4927622 4927662 -3500619 + (GAATG)n Satellite Satellite 4 43 0 1131 89 0 0 chr3_random 4927681 4927860 -3500421 + (GAATG)n Satellite Satellite 1 179 0 918 140 0 0 chr3_random 4927881 4928060 -3500221 + (GAATG)n Satellite Satellite 1 179 0 654 132 5 53 chr3_random 4928085 4928274 -3500007 + (GAATG)n Satellite Satellite 1 180 0 1146 133 1 1 chr3_random 4928295 4928710 -3499571 + (GAATG)n Satellite Satellite 1 414 0 963 129 0 0 chr3_random 4929153 4929331 -3498950 + (GAATG)n Satellite Satellite 3 180 0 1060 142 3 3 chr3_random 4929354 4929707 -3498574 + (GAATG)n Satellite Satellite 1 353 0 1176 122 0 0 chr3_random 4929718 4930192 -3498089 + (GAATG)n Satellite Satellite 1 474 0 1014 117 0 0 chr3_random 4930209 4930388 -3497893 + (GAATG)n Satellite Satellite 1 179 0 1077 127 0 1 chr3_random 4930404 4931247 -3497034 + (GAATG)n Satellite Satellite 1 1021 0 949 117 6 6 chr3_random 4931258 4931437 -3496844 + (GAATG)n Satellite Satellite 2 180 0 891 139 0 0 chr3_random 4931458 4931638 -3496643 + (GAATG)n Satellite Satellite 1 180 0 1082 111 0 6 chr3_random 4931663 4932023 -3496258 + (GAATG)n Satellite Satellite 1 538 0 968 136 2 11 chr3_random 4932034 4932497 -3495784 + (GAATG)n Satellite Satellite 1 459 0 1117 86 6 6 chr3_random 4932513 4932883 -3495398 + (GAATG)n Satellite Satellite 1 370 0 1197 132 1 0 chr3_random 4932898 4933665 -3494616 + (GAATG)n Satellite Satellite 1 948 0 1137 114 0 14 chr3_random 4933712 4934081 -3494200 + (GAATG)n Satellite Satellite 1 363 0 1056 125 0 1 chr3_random 4934092 4934591 -3493690 + (GAATG)n Satellite Satellite 1 677 0 1026 132 0 6 chr3_random 4934626 4935405 -3492876 + (GAATG)n Satellite Satellite 1 774 0 1002 122 0 0 chr3_random 4935416 4935596 -3492685 + (GAATG)n Satellite Satellite 1 180 0 902 130 6 0 chr3_random 4935611 4935788 -3492493 + (GAATG)n Satellite Satellite 3 180 0 567 201 0 0 chr3_random 4935800 4935974 -3492307 + (GAATG)n Satellite Satellite 2 175 0 1064 124 3 2 chr3_random 4935985 4936418 -3491863 + (GAATG)n Satellite Satellite 1 613 0 749 141 0 27 chr3_random 4936429 4936613 -3491668 + (GAATG)n Satellite Satellite 2 180 0 1002 128 3 0 chr3_random 4936640 4936992 -3491289 + (GAATG)n Satellite Satellite 1 353 0 1212 51 17 0 chr3_random 4937003 4937180 -3491101 + (GAATG)n Satellite Satellite 1 180 0 623 179 6 0 chr3_random 4937215 4937394 -3490887 + (GAATG)n Satellite Satellite 1 180 0 1068 117 0 2 chr3_random 4937415 4937774 -3490507 + (GAATG)n Satellite Satellite 1 539 0 1176 89 0 0 chr3_random 4937819 4937999 -3490282 + (GAATG)n Satellite Satellite 1 180 0 848 141 6 0 chr3_random 4938015 4938192 -3490089 + (GAATG)n Satellite Satellite 2 179 0 1095 111 0 0 chr3_random 4938206 4938465 -3489816 + (GAATG)n Satellite Satellite 1 259 0 801 116 0 53 chr3_random 4938488 4938678 -3489603 + (GAATG)n Satellite Satellite 1 180 0 1008 151 0 0 chr3_random 4938691 4939072 -3489209 + (GAATG)n Satellite Satellite 1 381 0 1095 135 1 9 chr3_random 4939083 4940202 -3488079 + (GAATG)n Satellite Satellite 1 1110 0 440 100 12 0 chr3_random 4940220 4940300 -3487981 + (GAATG)n Satellite Satellite 2 82 0 1035 139 1 2 chr3_random 4940405 4941178 -3487103 + (GAATG)n Satellite Satellite 1 952 0 981 128 0 0 chr3_random 4941178 4941358 -3486923 + (GAATG)n Satellite Satellite 1 180 0 1059 104 0 0 chr3_random 4941419 4941592 -3486689 + (GAATG)n Satellite Satellite 2 174 0 777 172 0 0 chr3_random 4941603 4941783 -3486498 + (GAATG)n Satellite Satellite 1 180 0 1005 123 0 0 chr3_random 4941794 4941973 -3486308 + (GAATG)n Satellite Satellite 1 179 0 951 132 0 13 chr3_random 4942013 4942378 -3485903 + (GAATG)n Satellite Satellite 2 538 0 1056 102 2 5 chr3_random 4942403 4942646 -3485635 + (GAATG)n Satellite Satellite 1 421 0 1050 142 0 0 chr3_random 4942661 4943266 -3485015 + (GAATG)n Satellite Satellite 1 605 0 643 128 5 53 chr3_random 4943288 4943476 -3484805 + (GAATG)n Satellite Satellite 1 179 0 893 140 6 0 chr3_random 4943506 4943684 -3484597 + (GAATG)n Satellite Satellite 2 180 0 1059 125 0 16 chr3_random 4943700 4944014 -3484267 + (GAATG)n Satellite Satellite 1 309 0 1086 132 3 1 chr3_random 4944035 4944573 -3483708 + (GAATG)n Satellite Satellite 1 718 0 1200 134 1 6 chr3_random 4944598 4944715 -3483566 + (GAATG)n Satellite Satellite 1 470 0 1200 103 0 0 chr3_random 4944715 4945071 -3483210 + (GAATG)n Satellite Satellite 1 356 0 969 128 0 0 chr3_random 4945359 4945539 -3482742 + (GAATG)n Satellite Satellite 1 180 0 1089 106 0 0 chr3_random 4945624 4945804 -3482477 + (GAATG)n Satellite Satellite 1 180 0 1020 139 1 11 chr3_random 4945822 4946344 -3481937 + (GAATG)n Satellite Satellite 1 694 0 1002 122 0 0 chr3_random 4946344 4946524 -3481757 + (GAATG)n Satellite Satellite 1 180 0 1044 124 1 12 chr3_random 4946948 4947492 -3480789 + (GAATG)n Satellite Satellite 3 714 0 1017 118 0 0 chr3_random 4947504 4947682 -3480599 + (GAATG)n Satellite Satellite 2 179 0 810 162 0 0 chr3_random 4947694 4947873 -3480408 + (GAATG)n Satellite Satellite 1 179 0 1260 110 1 8 chr3_random 4947884 4948336 -3479945 + (GAATG)n Satellite Satellite 1 810 0 1146 116 0 0 chr3_random 4948336 4948700 -3479581 + (GAATG)n Satellite Satellite 1 364 0 1056 111 0 0 chr3_random 4948776 4948956 -3479325 + (GAATG)n Satellite Satellite 1 180 0 948 140 4 0 chr3_random 4948976 4949473 -3478808 + (GAATG)n Satellite Satellite 1 499 0 960 139 0 0 chr3_random 4949490 4949883 -3478398 + (GAATG)n Satellite Satellite 1 393 0 835 111 0 53 chr3_random 4949894 4950084 -3478197 + (GAATG)n Satellite Satellite 1 180 0 893 124 0 27 chr3_random 4950104 4950289 -3477992 + (GAATG)n Satellite Satellite 1 180 0 1115 100 4 18 chr3_random 4950320 4950685 -3477596 + (GAATG)n Satellite Satellite 1 536 0 1031 126 4 2 chr3_random 4950709 4951028 -3477253 + (GAATG)n Satellite Satellite 1 499 0 951 127 0 0 chr3_random 4951046 4951219 -3477062 + (GAATG)n Satellite Satellite 1 173 0 1227 111 2 10 chr3_random 4951252 4951731 -3476550 + (GAATG)n Satellite Satellite 1 475 0 1008 128 0 0 chr3_random 4951742 4951921 -3476360 + (GAATG)n Satellite Satellite 2 180 0 1143 102 5 2 chr3_random 4951946 4952407 -3475874 + (GAATG)n Satellite Satellite 1 462 0 975 124 0 0 chr3_random 4952420 4952597 -3475684 + (GAATG)n Satellite Satellite 1 177 0 917 120 0 27 chr3_random 4952637 4952821 -3475460 + (GAATG)n Satellite Satellite 2 180 0 866 128 4 0 chr3_random 4952837 4953070 -3475211 + (GAATG)n Satellite Satellite 1 234 0 1107 114 2 4 chr3_random 4953091 4954273 -3474008 + (GAATG)n Satellite Satellite 1 1357 0 890 67 5 77 chr3_random 4954284 4954478 -3473803 + (GAATG)n Satellite Satellite 1 180 0 204 185 0 0 chr3_random 4954503 4954557 -3473724 + (GAATG)n Satellite Satellite 2 55 0 1062 115 0 17 chr3_random 4954569 4954878 -3473403 + (GAATG)n Satellite Satellite 1 478 0 1005 118 0 0 chr3_random 4954878 4955056 -3473225 + (GAATG)n Satellite Satellite 3 180 0 996 138 2 4 chr3_random 4955393 4955751 -3472530 + (GAATG)n Satellite Satellite 2 536 0 1092 138 2 0 chr3_random 4955762 4956426 -3471855 + (GAATG)n Satellite Satellite 1 665 0 996 117 3 0 chr3_random 4956439 4956779 -3471502 + (GAATG)n Satellite Satellite 1 341 0 1197 104 0 0 chr3_random 4956790 4957119 -3471162 + (GAATG)n Satellite Satellite 1 329 0 894 145 2 9 chr3_random 4957141 4957668 -3470613 + (GAATG)n Satellite Satellite 1 523 0 1363 131 6 1 chr3_random 4957770 4958775 -3469506 + ALR/Alpha Satellite centromeric 1 1009 -27 12594 75 13 1 chr3_random 4958777 4960613 -3467668 + L1P LINE L1 1368 3226 -2920 500 165 38 19 chr3_random 4960613 4960748 -3467533 + ALR/Alpha Satellite centromeric 1 137 -50 1345 132 6 1 chr3_random 4960850 4967544 -3460737 + ALR/Alpha Satellite centromeric 1 6728 -31 6569 52 4 0 chr3_random 4967545 4968308 -3459973 + LTR5 LTR ERVK 1 766 -203 1145 159 7 6 chr3_random 4968408 4982227 -3446054 + ALR/Alpha Satellite centromeric 1 13831 -62 913 180 10 0 chr3_random 4982250 4982669 -3445612 + ALR/Alpha Satellite centromeric 1 423 -6 1133 143 5 6 chr3_random 4982680 4985255 -3443026 + ALR/Alpha Satellite centromeric 1 2572 -8 1120 163 6 4 chr3_random 4985357 4990478 -3437803 + ALR/Alpha Satellite centromeric 1 5129 -75 1075 154 6 2 chr3_random 4990578 4991233 -3437048 + ALR/Alpha Satellite centromeric 1 657 -10 1219 154 9 1 chr3_random 4991247 5000701 -3427580 + ALR/Alpha Satellite centromeric 1 9532 -2 37025 56 43 2 chr3_random 5000707 5005531 -3422750 + L1P LINE L1 1 5024 -1122 10829 40 6 2 chr3_random 5005631 5007713 -3420568 + L1PA3 LINE L1 4070 6154 -1 1142 154 6 0 chr3_random 5007714 5009905 -3418376 + ALR/Alpha Satellite centromeric 1 2202 -8 1066 156 41 2 chr3_random 5009916 5010242 -3418039 + ALR/Alpha Satellite centromeric 1 338 0 1189 155 4 3 chr3_random 5010253 5027737 -3400544 + ALR/Alpha Satellite centromeric 1 17506 -64 2597 22 4 0 chr3_random 5027737 5028097 -3400184 - L1PA2 LINE L1 -723 5432 5072 6338 18 0 0 chr3_random 5028097 5028820 -3399461 + L1PA2 LINE L1 5430 6153 -2 1202 151 4 4 chr3_random 5028840 5036695 -3391586 + ALR/Alpha Satellite centromeric 1 7860 0 1221 159 5 3 chr3_random 5036706 5050268 -3378013 + ALR/Alpha Satellite centromeric 1 13583 -67 41043 47 26 1 chr3_random 5050268 5056255 -3372026 - L1PA2 LINE L1 -8 6147 8 984 167 0 0 chr3_random 5056255 5056457 -3371824 + ALR/Alpha Satellite centromeric 1 202 -9 3694 43 14 2 chr3_random 5056457 5057184 -3371097 - L1P1 LINE L1 -518 5637 4906 1426 137 4 0 chr3_random 5057286 5064795 -3363486 + ALR/Alpha Satellite centromeric 1 7537 -49 5766 54 0 4 chr3_random 5064895 5065614 -3362667 + L1PA3 LINE L1 5432 6147 -8 876 193 8 3 chr3_random 5065661 5066145 -3362136 - ALR/Alpha Satellite centromeric -1 486 1 1039 163 4 5 chr3_random 5066156 5067870 -3360411 - ALR/Alpha Satellite centromeric 0 1712 1 1047 168 8 2 chr3_random 5067887 5070100 -3358181 - ALR/Alpha Satellite centromeric -8 2228 1 1052 175 5 5 chr3_random 5070114 5075700 -3352581 - ALR/Alpha Satellite centromeric 0 5586 1 903 194 2 0 chr3_random 5075712 5076731 -3351550 - ALR/Alpha Satellite centromeric -1 1021 1 822 154 12 0 chr3_random 5076747 5076920 -3351361 - ALR/Alpha Satellite centromeric 0 175 1 7221 55 0 0 chr3_random 5076921 5077856 -3350425 - L1PA3 LINE L1 0 6155 5221 2088 93 0 0 chr3_random 5077865 5078143 -3350138 - L1P LINE L1 -5861 285 8 1160 173 4 2 chr3_random 5078145 5088915 -3339366 - ALR/Alpha Satellite centromeric 0 10793 1 1445 136 8 1 chr3_random 5088927 5101908 -3326373 - ALR/Alpha Satellite centromeric 0 13069 1 1704 141 0 0 chr3_random 5101914 5102197 -3326084 - L1P LINE L1 -4788 1358 1076 1104 90 11 11 chr3_random 5102202 5102391 -3325890 + L1P LINE L1 3240 3428 -2718 971 122 8 12 chr3_random 5102396 5104139 -3324142 + HSATII Satellite Satellite 1 1736 -3 828 137 0 0 chr3_random 5104164 5104317 -3323964 + HSATII Satellite Satellite 17 169 -1 635 159 0 19 chr3_random 5104334 5104491 -3323790 + HSATII Satellite Satellite 14 167 -3 968 122 8 12 chr3_random 5104517 5105011 -3323270 + HSATII Satellite Satellite 1 492 0 865 93 0 29 chr3_random 5105037 5105242 -3323039 + HSATII Satellite Satellite 1 199 -91 1052 112 12 12 chr3_random 5105261 5106239 -3322042 + HSATII Satellite Satellite 1 977 0 722 106 46 0 chr3_random 5106251 5106402 -3321879 + HSATII Satellite Satellite 10 167 -3 977 119 13 14 chr3_random 5106434 5108788 -3319493 + HSATII Satellite Satellite 1 2350 -108 1019 113 8 8 chr3_random 5108827 5109216 -3319065 + HSATII Satellite Satellite 1 389 -3 960 125 9 0 chr3_random 5109241 5109784 -3318497 + HSATII Satellite Satellite 1 548 -1 974 125 9 7 chr3_random 5109807 5110252 -3318029 + HSATII Satellite Satellite 1 446 -1 921 118 11 19 chr3_random 5110264 5110747 -3317534 + HSATII Satellite Satellite 1 479 0 273 140 0 0 chr3_random 5110776 5110833 -3317448 + HSATII Satellite Satellite 7 63 -107 1013 113 9 12 chr3_random 5110845 5111581 -3316700 + HSATII Satellite Satellite 1 733 -1 1028 112 16 10 chr3_random 5111611 5112745 -3315536 + HSATII Satellite Satellite 1 1140 0 914 118 8 19 chr3_random 5112762 5113885 -3314396 + HSATII Satellite Satellite 1 1111 0 983 117 14 11 chr3_random 5113910 5115505 -3312776 + HSATII Satellite Satellite 1 1598 -1 879 126 13 16 chr3_random 5115524 5116461 -3311820 + HSATII Satellite Satellite 1 934 -68 1106 100 4 0 chr3_random 5116463 5116730 -3311551 + (GAATG)n Satellite Satellite 1 268 0 960 103 0 0 chr3_random 5116768 5116924 -3311357 + (GAATG)n Satellite Satellite 2 157 0 905 131 6 0 chr3_random 5116935 5117111 -3311170 + (GAATG)n Satellite Satellite 4 180 0 873 159 0 0 chr3_random 5117154 5117598 -3310683 + (GAATG)n Satellite Satellite 1 444 0 993 135 0 2 chr3_random 5117633 5117993 -3310288 + (GAATG)n Satellite Satellite 1 540 0 735 165 0 0 chr3_random 5118016 5118192 -3310089 + (GAATG)n Satellite Satellite 2 177 0 762 181 0 0 chr3_random 5118209 5118517 -3309764 + (GAATG)n Satellite Satellite 1 308 0 1179 121 3 3 chr3_random 5118531 5118873 -3309408 + (GAATG)n Satellite Satellite 1 342 0 885 140 0 0 chr3_random 5118899 5119077 -3309204 + (GAATG)n Satellite Satellite 2 179 0 1008 135 0 6 chr3_random 5119089 5119407 -3308874 + (GAATG)n Satellite Satellite 1 493 0 1038 117 0 0 chr3_random 5119419 5119598 -3308683 + (GAATG)n Satellite Satellite 1 179 0 739 123 13 13 chr3_random 5119613 5119767 -3308514 + (GAATG)n Satellite Satellite 2 155 0 985 125 3 3 chr3_random 5119782 5120138 -3308143 + (GAATG)n Satellite Satellite 1 356 0 1041 105 0 0 chr3_random 5120151 5120417 -3307864 + (GAATG)n Satellite Satellite 1 266 0 972 137 0 0 chr3_random 5120437 5120797 -3307484 + (GAATG)n Satellite Satellite 1 360 0 845 137 6 0 chr3_random 5120823 5120991 -3307290 + (GAATG)n Satellite Satellite 2 170 0 969 137 0 2 chr3_random 5121003 5121251 -3307030 + (GAATG)n Satellite Satellite 1 427 0 753 112 5 53 chr3_random 5121263 5121451 -3306830 + (GAATG)n Satellite Satellite 1 179 0 1167 102 0 2 chr3_random 5121491 5121958 -3306323 + (GAATG)n Satellite Satellite 1 646 0 885 88 0 78 chr3_random 5121971 5122164 -3306117 + (GAATG)n Satellite Satellite 3 180 0 1164 129 1 1 chr3_random 5122204 5122803 -3305478 + (GAATG)n Satellite Satellite 1 779 0 1017 123 0 0 chr3_random 5122815 5122994 -3305287 + (GAATG)n Satellite Satellite 2 180 0 593 181 6 0 chr3_random 5123020 5123197 -3305084 + (GAATG)n Satellite Satellite 3 180 0 969 146 0 0 chr3_random 5123259 5123573 -3304708 + (GAATG)n Satellite Satellite 1 314 0 1027 114 3 3 chr3_random 5123605 5123953 -3304328 + (GAATG)n Satellite Satellite 1 348 0 1011 131 1 12 chr3_random 5123964 5124682 -3303599 + (GAATG)n Satellite Satellite 1 888 0 1068 111 0 0 chr3_random 5124693 5124873 -3303408 + (GAATG)n Satellite Satellite 1 180 0 1200 89 0 0 chr3_random 5124888 5125068 -3303213 + (GAATG)n Satellite Satellite 1 180 0 1190 73 6 0 chr3_random 5125098 5125277 -3303004 + (GAATG)n Satellite Satellite 1 180 0 869 126 2 0 chr3_random 5125290 5125748 -3302533 + (GAATG)n Satellite Satellite 1 459 0 827 135 0 27 chr3_random 5125761 5125946 -3302335 + (GAATG)n Satellite Satellite 1 180 0 1077 126 1 5 chr3_random 5125976 5126669 -3301612 + (GAATG)n Satellite Satellite 2 867 0 1137 90 0 0 chr3_random 5126688 5126865 -3301416 + (GAATG)n Satellite Satellite 1 177 0 930 135 0 0 chr3_random 5126880 5127129 -3301152 + (GAATG)n Satellite Satellite 1 249 0 894 133 4 38 chr3_random 5127140 5127403 -3300878 + (GAATG)n Satellite Satellite 1 253 0 815 156 3 0 chr3_random 5127415 5127767 -3300514 + (GAATG)n Satellite Satellite 1 353 0 980 100 11 11 chr3_random 5127778 5127958 -3300323 + (GAATG)n Satellite Satellite 1 180 0 1023 113 0 0 chr3_random 5127998 5128307 -3299974 + (GAATG)n Satellite Satellite 1 309 0 1134 67 0 0 chr3_random 5128319 5128642 -3299639 + (GAATG)n Satellite Satellite 1 323 0 794 153 6 0 chr3_random 5128653 5128830 -3299451 + (GAATG)n Satellite Satellite 3 180 0 399 195 0 0 chr3_random 5128842 5128955 -3299326 + (GAATG)n Satellite Satellite 3 115 0 971 135 2 0 chr3_random 5128967 5129430 -3298851 + (GAATG)n Satellite Satellite 1 464 0 830 131 0 27 chr3_random 5129446 5129629 -3298652 + (GAATG)n Satellite Satellite 3 180 0 1122 95 0 0 chr3_random 5129646 5129825 -3298456 + (GAATG)n Satellite Satellite 2 180 0 1152 134 2 10 chr3_random 5129846 5130901 -3297380 + (GAATG)n Satellite Satellite 1 1225 0 1152 89 0 0 chr3_random 5130901 5131081 -3297200 + (GAATG)n Satellite Satellite 1 180 0 1209 110 0 17 chr3_random 5131151 5131693 -3296588 + (GAATG)n Satellite Satellite 1 712 0 943 111 6 6 chr3_random 5131725 5131905 -3296376 + (GAATG)n Satellite Satellite 1 180 0 1081 120 3 3 chr3_random 5131918 5132220 -3296061 + (GAATG)n Satellite Satellite 1 302 0 968 114 6 0 chr3_random 5132232 5132408 -3295873 + (GAATG)n Satellite Satellite 1 177 0 1047 115 2 0 chr3_random 5132443 5133076 -3295205 + (GAATG)n Satellite Satellite 1 634 0 1050 112 0 0 chr3_random 5133103 5133281 -3295000 + (GAATG)n Satellite Satellite 2 179 0 927 139 0 0 chr3_random 5133287 5133307 -3294974 + (GAATG)n Satellite Satellite 1 200 0 927 139 0 0 chr3_random 5133307 5133487 -3294794 + (GAATG)n Satellite Satellite 1 180 0 987 142 0 0 chr3_random 5133528 5133887 -3294394 + (GAATG)n Satellite Satellite 1 359 0 702 168 0 0 chr3_random 5133898 5134111 -3294170 + (GAATG)n Satellite Satellite 1 213 0 867 147 0 0 chr3_random 5134139 5134316 -3293965 + (GAATG)n Satellite Satellite 2 178 0 636 205 0 0 chr3_random 5134338 5134509 -3293772 + (GAATG)n Satellite Satellite 4 174 0 1155 112 2 12 chr3_random 5134528 5135234 -3293047 + (GAATG)n Satellite Satellite 2 874 0 1149 116 0 0 chr3_random 5135245 5135484 -3292797 + (GAATG)n Satellite Satellite 1 239 0 1138 72 6 11 chr3_random 5135510 5135690 -3292591 + (GAATG)n Satellite Satellite 2 180 0 1089 92 0 0 chr3_random 5135726 5135890 -3292391 + (GAATG)n Satellite Satellite 2 165 0 1056 136 3 8 chr3_random 5135912 5136219 -3292062 + (GAATG)n Satellite Satellite 1 484 0 1056 111 0 0 chr3_random 5136219 5136399 -3291882 + (GAATG)n Satellite Satellite 1 180 0 222 37 0 0 chr3_random 5136469 5136496 -3291785 + (GAATG)n Satellite Satellite 4 30 0 1047 117 0 0 chr3_random 5136509 5136689 -3291592 + (GAATG)n Satellite Satellite 1 180 0 181 132 19 38 chr3_random 5136699 5136752 -3291529 - HSATII Satellite Satellite -115 55 4 1059 136 2 0 chr3_random 5136739 5137096 -3291185 + (GAATG)n Satellite Satellite 1 538 0 669 181 0 0 chr3_random 5137133 5137310 -3290971 + (GAATG)n Satellite Satellite 3 179 0 1074 122 0 0 chr3_random 5137442 5137873 -3290408 + (GAATG)n Satellite Satellite 1 431 0 894 133 4 38 chr3_random 5137884 5138147 -3290134 + (GAATG)n Satellite Satellite 1 253 0 1065 129 4 7 chr3_random 5138159 5139082 -3289199 + (GAATG)n Satellite Satellite 1 1099 0 981 128 0 0 chr3_random 5139082 5139262 -3289019 + (GAATG)n Satellite Satellite 1 180 0 1065 106 0 0 chr3_random 5139392 5139572 -3288709 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 1016 106 6 0 chr3_random 5139722 5139901 -3288380 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 1024 101 6 6 chr3_random 5140045 5140224 -3288057 + (GAATG)n Simple_repeat Simple_repeat 2 180 0 878 119 0 27 chr3_random 5140350 5140535 -3287746 + (GAATG)n Satellite Satellite 1 180 0 1035 121 0 0 chr3_random 5140555 5140909 -3287372 + (GAATG)n Satellite Satellite 1 354 0 1062 128 0 0 chr3_random 5140921 5141177 -3287104 + (GAATG)n Satellite Satellite 1 256 0 798 150 0 0 chr3_random 5141190 5141357 -3286924 + (GAATG)n Satellite Satellite 4 170 0 990 122 0 0 chr3_random 5141370 5141550 -3286731 + (GAATG)n Satellite Satellite 1 180 0 1038 136 0 0 chr3_random 5141565 5141920 -3286361 + (GAATG)n Satellite Satellite 1 355 0 1155 113 2 0 chr3_random 5141941 5142539 -3285742 + (GAATG)n Satellite Satellite 1 599 0 903 136 0 0 chr3_random 5142552 5142798 -3285483 + (GAATG)n Satellite Satellite 1 246 0 3068 191 32 10 chr3_random 5342805 5343403 -3084878 - L1PBb LINE L1 -5483 721 111 1428 219 28 3 chr3_random 5343404 5343729 -3084552 + MER34C LTR ERV1 253 585 0 1375 262 0 0 chr3_random 5344088 5344382 -3083899 + Tigger7 DNA MER2_type 1 294 -2193 275 294 0 0 chr3_random 5344378 5344446 -3083835 + Tigger7 DNA MER2_type 2414 2481 -10 * 1543 226 52 18 chr3_random 5344464 5344845 -3083436 - MSTD LTR MaLR -2 394 1 4234 256 93 30 chr3_random 5344861 5346171 -3082110 - MSTD-int LTR MaLR -29 1706 314 1064 205 8 61 chr3_random 5346175 5346357 -3081924 - MER50 LTR ERV1 0 734 569 4876 31 0 0 chr3_random 5346357 5346933 -3081348 + L1PA3 LINE L1 5577 6152 -3 1064 205 8 61 chr3_random 5346933 5347013 -3081268 - MER50 LTR ERV1 -165 569 486 774 247 98 62 chr3_random 5347043 5347431 -3080850 - MER50 LTR ERV1 -323 411 10 1404 207 20 3 chr3_random 5347437 5347742 -3080539 - MSTD-int LTR MaLR -1422 313 4 1855 204 40 0 chr3_random 5347749 5348126 -3080155 - MSTD LTR MaLR -4 392 1 7601 219 21 33 chr3_random 5348390 5349870 -3078411 - L1M1 LINE L1 -5278 2287 903 2185 125 7 0 chr3_random 5349870 5350175 -3078106 + AluSx SINE Alu 1 307 -5 7601 219 21 33 chr3_random 5350175 5350401 -3077880 - L1M1 LINE L1 -6662 903 676 1880 173 3 0 chr3_random 5350475 5350782 -3077499 + AluSx SINE Alu 1 308 -4 22 70 0 0 chr3_random 5350892 5350935 -3077346 + AT_rich Low_complexity Low_complexity 1 43 0 234 62 0 0 chr3_random 5351127 5351159 -3077122 + (TC)n Simple_repeat Simple_repeat 2 33 0 25 0 0 0 chr3_random 5352031 5352056 -3076225 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3_random 5352294 5352317 -3075964 + AT_rich Low_complexity Low_complexity 1 23 0 224 406 35 0 chr3_random 5352755 5352898 -3075383 + MER5B DNA MER1_type 4 151 -27 1815 316 86 24 chr3_random 5353146 5354129 -3074152 + L2 LINE L2 1816 2858 -456 402 292 98 72 chr3_random 5354233 5354436 -3073845 + L2 LINE L2 2995 3210 -103 4438 126 21 39 chr3_random 5354436 5355229 -3073052 - MER4E LTR ERV1 0 779 1 402 292 98 72 chr3_random 5355229 5355330 -3072951 + L2 LINE L2 3210 3307 -6 34 65 0 0 chr3_random 5355557 5355619 -3072662 + AT_rich Low_complexity Low_complexity 1 62 0 321 26 0 0 chr3_random 5355672 5355710 -3072571 + (TG)n Simple_repeat Simple_repeat 2 39 0 729 163 19 25 chr3_random 5356790 5356950 -3071331 - L1MA10 LINE L1 0 6334 6176 1526 191 52 30 chr3_random 5356978 5357340 -3070941 + L1MA9 LINE L1 5943 6312 0 319 104 0 0 chr3_random 5357337 5357385 -3070896 + L1MB1 LINE L1 6115 6162 -27 * 180 324 14 27 chr3_random 5357502 5357576 -3070705 - MIR3 SINE MIR -11 197 125 189 384 30 20 chr3_random 5357634 5357733 -3070548 - L3 LINE CR1 -92 1485 1386 254 224 17 0 chr3_random 5357904 5357962 -3070319 + CT-rich Low_complexity Low_complexity 1 59 0 1574 251 15 79 chr3_random 5357991 5358524 -3069757 - LTR40a LTR ERVL 0 519 21 332 289 56 47 chr3_random 5358569 5358891 -3069390 - L1ME LINE L1 -5038 1044 720 690 337 73 32 chr3_random 5359340 5359844 -3068437 - L1ME LINE L1 -5538 532 8 344 315 79 48 chr3_random 5359854 5360019 -3068262 + MIR SINE MIR 74 243 -19 32 43 0 0 chr3_random 5360440 5360486 -3067795 + AT_rich Low_complexity Low_complexity 1 46 0 28 22 0 22 chr3_random 5361690 5361719 -3066562 + AT_rich Low_complexity Low_complexity 1 30 -15 1449 191 134 34 chr3_random 5361719 5362106 -3066175 + MSTB LTR MaLR 1 426 0 28 22 0 22 chr3_random 5362106 5362122 -3066159 + AT_rich Low_complexity Low_complexity 30 45 0 1545 229 17 49 chr3_random 5362307 5362639 -3065642 - L1MA4 LINE L1 -4 6296 5982 1950 126 7 14 chr3_random 5362639 5362932 -3065349 - AluSx SINE Alu -21 291 1 1545 229 17 49 chr3_random 5362932 5363067 -3065214 - L1MA4 LINE L1 -318 5982 5844 341 281 35 9 chr3_random 5363138 5363252 -3065029 - MLT1C LTR MaLR 0 467 351 2325 158 12 2 chr3_random 5363259 5363671 -3064610 - L1MA4 LINE L1 -440 5860 5445 22 43 0 21 chr3_random 5363672 5363692 -3064589 + AT_rich Low_complexity Low_complexity 1 20 -26 2799 33 3 0 chr3_random 5363692 5364029 -3064252 - L1PA4 LINE L1 -3 6152 5815 22 43 0 21 chr3_random 5364029 5364055 -3064226 + AT_rich Low_complexity Low_complexity 20 46 0 368 258 215 21 chr3_random 5364430 5364625 -3063656 + MLT1D LTR MaLR 218 481 -24 2227 84 6 41 chr3_random 5364973 5365293 -3062988 - AluSq SINE Alu 0 313 5 31 58 0 0 chr3_random 5366235 5366287 -3061994 + AT_rich Low_complexity Low_complexity 1 52 0 1230 204 67 35 chr3_random 5366358 5366642 -3061639 + AluJo SINE Alu 11 303 -9 191 338 128 14 chr3_random 5366854 5367002 -3061279 - MIR SINE MIR -1 261 97 1017 25 0 0 chr3_random 5368209 5368331 -3059950 - L1PA4 LINE L1 -6 6149 6028 21 57 0 0 chr3_random 5369307 5369342 -3058939 + AT_rich Low_complexity Low_complexity 1 35 0 1223 228 38 35 chr3_random 5370492 5370865 -3057416 + MLT1A2 LTR MaLR 1 374 0 183 167 24 24 chr3_random 5370865 5370907 -3057374 + L3 LINE CR1 1529 1570 -7 260 276 8 77 chr3_random 5371107 5371225 -3057056 + MLT1G3 LTR MaLR 127 311 -284 596 286 51 0 chr3_random 5371546 5371742 -3056539 + MER3 DNA MER1_type 1 206 -3 231 306 22 77 chr3_random 5372038 5372221 -3056060 - L2 LINE L2 -10 3303 3131 255 299 52 126 chr3_random 5372345 5372750 -3055531 - L2 LINE L2 -376 2937 2564 4937 206 101 3 chr3_random 5372932 5375110 -3053171 + L1MA4 LINE L1 3896 6300 0 2092 234 104 39 chr3_random 5375230 5376024 -3052257 - Charlie1 DNA MER1_type -8 2753 1908 1111 228 116 10 chr3_random 5376024 5376335 -3051946 - MER2 DNA MER2_type 0 344 1 419 299 182 62 chr3_random 5376335 5376531 -3051750 - L1MC4a LINE L1 -984 6824 6653 351 0 0 0 chr3_random 5376531 5376570 -3051711 + (CA)n Simple_repeat Simple_repeat 2 40 0 419 299 182 62 chr3_random 5376570 5376681 -3051600 - L1MC4a LINE L1 -1155 6653 6480 474 350 153 8 chr3_random 5377111 5377471 -3050810 - L3b LINE CR1 -56 1527 1116 331 330 119 22 chr3_random 5377838 5378065 -3050216 - MIR SINE MIR -1 261 13 585 245 13 40 chr3_random 5379053 5379204 -3049077 - MER58A DNA MER1_type 0 147 1 4386 192 15 49 chr3_random 5379427 5380449 -3047832 - L1MA9 LINE L1 0 6312 5326 267 230 14 27 chr3_random 5380484 5380558 -3047723 - MIR SINE MIR -65 197 125 1043 123 18 0 chr3_random 5380773 5380936 -3047345 - L1PA10 LINE L1 0 6168 6003 21 71 0 0 chr3_random 5381005 5381047 -3047234 + AT_rich Low_complexity Low_complexity 1 42 0 338 296 82 31 chr3_random 5381203 5381497 -3046784 + L1ME2 LINE L1 4195 4503 -1643 251 337 40 48 chr3_random 5381853 5382206 -3046075 + L1ME2 LINE L1 5606 5955 -209 3827 152 43 60 chr3_random 5382771 5383423 -3044858 + L1PB4 LINE L1 5389 6027 -129 2420 41 7 0 chr3_random 5383423 5383714 -3044567 + AluY SINE Alu 16 308 -3 3827 152 43 60 chr3_random 5383714 5383842 -3044439 + L1PB4 LINE L1 6027 6156 0 202 272 80 116 chr3_random 5384168 5384392 -3043889 - MIR SINE MIR -4 258 43 32 67 0 0 chr3_random 5385449 5385509 -3042772 + AT_rich Low_complexity Low_complexity 1 60 0 25 0 0 0 chr3_random 5385996 5386021 -3042260 + AT_rich Low_complexity Low_complexity 1 25 0 1461 200 17 27 chr3_random 5386383 5386858 -3041423 - L1MA6 LINE L1 -1488 4658 3869 3606 187 65 11 chr3_random 5386858 5388208 -3040073 + L1MA6 LINE L1 4668 6300 0 772 85 0 0 chr3_random 5389103 5389209 -3039072 - L1PA5 LINE L1 0 6154 6049 308 200 50 108 chr3_random 5389916 5390036 -3038245 - MLT1F LTR MaLR -420 122 10 1085 273 43 45 chr3_random 5390087 5390707 -3037574 + L1ME1 LINE L1 3879 4497 -1649 979 230 74 80 chr3_random 5390784 5391336 -3036945 + L1ME1 LINE L1 4622 5170 -976 702 203 21 0 chr3_random 5391408 5391551 -3036730 + L1M4 LINE L1 5600 5745 -433 21 0 0 0 chr3_random 5391552 5391573 -3036708 + AT_rich Low_complexity Low_complexity 1 21 0 265 163 62 0 chr3_random 5391579 5391659 -3036622 + (TA)n Simple_repeat Simple_repeat 2 86 0 1841 98 4 0 chr3_random 5391661 5391906 -3036375 - AluSp SINE Alu -3 310 65 1272 272 117 9 chr3_random 5391920 5392476 -3035805 + L1ME1 LINE L1 5276 5891 -275 * 11232 210 34 37 chr3_random 5392470 5396373 -3031908 - L1MA4A LINE L1 -27 6276 2394 276 382 45 0 chr3_random 5396374 5396531 -3031750 - L2 LINE L2 -706 2608 2445 254 238 57 9 chr3_random 5396592 5396697 -3031584 + L1MCc LINE L1 72 181 -6242 6377 184 148 60 chr3_random 5397349 5398962 -3029319 - MER52A LTR ERV1 0 1755 1 2980 233 48 9 chr3_random 5399028 5400158 -3028123 - L1MC/D LINE L1 -753 5393 4394 468 345 88 12 chr3_random 5400173 5400576 -3027705 - L1MC/D LINE L1 -2630 3516 3084 1062 167 81 5 chr3_random 5400593 5400791 -3027490 + AluSx SINE Alu 59 271 -41 1307 219 0 8 chr3_random 5400793 5401053 -3027228 + AluJb SINE Alu 30 287 -25 207 105 26 0 chr3_random 5401110 5401148 -3027133 + A-rich Low_complexity Low_complexity 3 41 0 23 54 0 0 chr3_random 5402137 5402174 -3026107 + AT_rich Low_complexity Low_complexity 1 37 0 1977 139 14 0 chr3_random 5403254 5403548 -3024733 - AluSx SINE Alu -14 298 1 1556 196 11 0 chr3_random 5404114 5404395 -3023886 + AluJo SINE Alu 7 290 -22 208 143 36 0 chr3_random 5404399 5404455 -3023826 + (TA)n Simple_repeat Simple_repeat 1 58 0 23 54 0 0 chr3_random 5404469 5404506 -3023775 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr3_random 5405026 5405061 -3023220 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3_random 5406581 5406610 -3021671 + AT_rich Low_complexity Low_complexity 1 29 0 507 356 64 23 chr3_random 5406879 5407269 -3021012 + L2 LINE L2 1755 2160 -1154 529 339 142 12 chr3_random 5407323 5407724 -3020557 + L2 LINE L2 1997 2449 -865 1573 160 130 62 chr3_random 5407865 5407906 -3020375 - MSTA LTR MaLR 0 428 391 1805 147 35 0 chr3_random 5407906 5408192 -3020089 + AluSx SINE Alu 1 296 -16 1573 160 130 62 chr3_random 5408192 5408551 -3019730 - MSTA LTR MaLR -37 391 1 255 317 117 0 chr3_random 5408823 5408943 -3019338 + L2 LINE L2 3180 3313 0 1834 213 0 3 chr3_random 5409752 5410100 -3018181 - MER7A DNA MER2_type 0 346 2 21 0 0 0 chr3_random 5410215 5410236 -3018045 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3_random 5410578 5410605 -3017676 + AT_rich Low_complexity Low_complexity 1 27 0 29 47 0 0 chr3_random 5413399 5413442 -3014839 + AT_rich Low_complexity Low_complexity 1 43 0 24 77 0 0 chr3_random 5415044 5415096 -3013185 + AT_rich Low_complexity Low_complexity 1 52 0 1746 149 17 68 chr3_random 5415274 5415629 -3012652 - MER1B DNA MER1_type 0 337 1 362 359 52 59 chr3_random 5416240 5416780 -3011501 - L1ME3 LINE L1 -307 5855 5320 462 239 44 9 chr3_random 5416949 5417062 -3011219 - FAM SINE Alu -37 148 32 406 303 59 36 chr3_random 5417286 5417507 -3010774 + MER110 LTR ERV1 188 413 -78 393 104 134 0 chr3_random 5417519 5417586 -3010695 - L1PA8 LINE L1 -7 6165 6090 31479 101 9 22 chr3_random 5417587 5422324 -3005957 - L1P LINE L1 -1463 4683 11 268 227 27 0 chr3_random 5422335 5422410 -3005871 + MER110 LTR ERV1 399 475 -16 275 122 0 0 chr3_random 5423251 5423292 -3004989 + Alu SINE Alu 252 292 -10 1385 273 35 45 chr3_random 5424005 5424536 -3003745 + L1MDa LINE L1 20 715 -5825 291 342 71 57 chr3_random 5425003 5425284 -3002997 - MLT1J LTR MaLR -200 311 27 25 51 0 0 chr3_random 5425387 5425426 -3002855 + AT_rich Low_complexity Low_complexity 1 39 0 52 88 0 0 chr3_random 5425504 5425640 -3002641 + AT_rich Low_complexity Low_complexity 1 136 0 21 0 0 0 chr3_random 5425667 5425688 -3002593 + AT_rich Low_complexity Low_complexity 1 21 0 812 189 54 0 chr3_random 5425902 5426050 -3002231 - AluJo SINE Alu -154 158 3 22 35 0 0 chr3_random 5426113 5426142 -3002139 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3_random 5426182 5426219 -3002062 + AT_rich Low_complexity Low_complexity 1 37 0 1347 209 54 15 chr3_random 5426260 5426591 -3001690 - MER7A DNA MER2_type -4 342 1 2400 69 7 0 chr3_random 5426594 5426898 -3001383 - AluSp SINE Alu -7 306 1 252 246 29 0 chr3_random 5427354 5427423 -3000858 + (TA)n Simple_repeat Simple_repeat 1 71 0 239 282 10 10 chr3_random 5427424 5427527 -3000754 + L1MC4 LINE L1 6615 6717 -1325 433 167 51 0 chr3_random 5427585 5427881 -3000400 + (TA)n Simple_repeat Simple_repeat 1 311 0 517 184 32 0 chr3_random 5427911 5428069 -3000212 + (TA)n Simple_repeat Simple_repeat 1 163 0 310 184 20 20 chr3_random 5428119 5428217 -3000064 + (TA)n Simple_repeat Simple_repeat 1 98 0 22 35 0 0 chr3_random 5428309 5428338 -2999943 + AT_rich Low_complexity Low_complexity 1 29 0 29 60 0 0 chr3_random 5428555 5428605 -2999676 + AT_rich Low_complexity Low_complexity 1 50 0 617 258 56 153 chr3_random 5428695 5429131 -2999150 - MER110 LTR ERV1 0 468 81 24 32 0 0 chr3_random 5429254 5429285 -2998996 + AT_rich Low_complexity Low_complexity 1 31 0 10801 216 56 26 chr3_random 5429285 5433578 -2994703 - L1MA4 LINE L1 -153 7566 3173 2155 90 7 0 chr3_random 5433578 5433892 -2994389 - AluY SINE Alu 0 316 1 10801 216 56 26 chr3_random 5433892 5434017 -2994264 - L1MA4 LINE L1 -4546 3173 3053 375 23 0 0 chr3_random 5434446 5434490 -2993791 + (TG)n Simple_repeat Simple_repeat 2 45 0 2764 85 0 0 chr3_random 5434490 5434865 -2993416 - L1PA7 LINE L1 -16 6138 5764 1696 264 59 44 chr3_random 5434866 5435910 -2992371 - L1M2 LINE L1 -4177 2672 1613 275 330 109 35 chr3_random 5436348 5436751 -2991530 - L1M2 LINE L1 -5847 932 500 286 100 33 0 chr3_random 5437218 5437278 -2991003 + (TA)n Simple_repeat Simple_repeat 2 63 0 222 62 0 0 chr3_random 5438780 5438812 -2989469 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 518 324 29 37 chr3_random 5438860 5439125 -2989156 - L2 LINE L2 -228 3085 2834 2016 129 10 0 chr3_random 5439125 5439427 -2988854 + AluSc SINE Alu 1 305 -4 518 324 29 37 chr3_random 5439427 5439528 -2988753 - L2 LINE L2 -479 2834 2734 466 225 113 63 chr3_random 5439832 5440101 -2988180 - L1ME3A LINE L1 -168 5994 5707 1778 149 3 36 chr3_random 5440101 5440403 -2987878 - AluSx SINE Alu -10 302 11 466 225 113 63 chr3_random 5440403 5440435 -2987846 - L1ME3A LINE L1 -455 5707 5678 278 311 42 63 chr3_random 5440562 5440619 -2987662 - L1M4 LINE L1 -3317 2829 2772 2205 84 0 7 chr3_random 5440619 5440942 -2987339 + AluY SINE Alu 1 321 0 278 311 42 63 chr3_random 5440942 5441455 -2986826 - L1M4 LINE L1 -3374 2772 2270 24 0 0 0 chr3_random 5442682 5442706 -2985575 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3_random 5443090 5443118 -2985163 + AT_rich Low_complexity Low_complexity 1 28 0 236 120 20 0 chr3_random 5443296 5443346 -2984935 + GA-rich Low_complexity Low_complexity 1 51 0 217 329 106 75 chr3_random 5444143 5444569 -2983712 - L2 LINE L2 -572 2742 2304 22 70 0 0 chr3_random 5444873 5444916 -2983365 + AT_rich Low_complexity Low_complexity 1 43 0 4302 91 24 159 chr3_random 5444976 5446527 -2981754 + pTR5 LTR ERV1 741 2606 0 2254 94 0 0 chr3_random 5447776 5448074 -2980207 - AluY SINE Alu -13 298 1 23 0 0 0 chr3_random 5448123 5448146 -2980135 + AT_rich Low_complexity Low_complexity 1 23 0 30 89 0 0 chr3_random 5448890 5448969 -2979312 + AT_rich Low_complexity Low_complexity 1 79 0 242 324 93 0 chr3_random 5449118 5449257 -2979024 - L1ME LINE L1 -268 5853 5702 451 87 0 165 chr3_random 5449408 5449511 -2978770 - L1PB3 LINE L1 -308 5846 5761 1182 161 14 5 chr3_random 5449513 5449724 -2978557 + L1PB3 LINE L1 5942 6154 0 25 65 0 0 chr3_random 5449726 5449772 -2978509 + AT_rich Low_complexity Low_complexity 1 46 0 1574 155 35 54 chr3_random 5452256 5452573 -2975708 + AluSq SINE Alu 1 311 -2 32 0 0 0 chr3_random 5452574 5452606 -2975675 + AT_rich Low_complexity Low_complexity 1 32 0 25 90 0 0 chr3_random 5452760 5452827 -2975454 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr3_random 5453015 5453039 -2975242 + AT_rich Low_complexity Low_complexity 1 24 0 417 146 24 0 chr3_random 5453188 5453270 -2975011 + L1PA13 LINE L1 6077 6160 -3 23 0 0 0 chr3_random 5453270 5453293 -2974988 + AT_rich Low_complexity Low_complexity 1 23 0 258 287 23 35 chr3_random 5453375 5453462 -2974819 - MIR SINE MIR -109 153 68 203 232 37 110 chr3_random 5453741 5453823 -2974458 - L3 LINE CR1 -676 901 826 3389 227 18 27 chr3_random 5454027 5455016 -2973265 + L1M1 LINE L1 12 1790 -5775 6318 156 25 2 chr3_random 5455023 5456168 -2972113 + L1M1 LINE L1 1957 3128 -4437 370 228 11 22 chr3_random 5456171 5456263 -2972018 - L1 LINE L1 -2283 5282 5192 6069 96 9 27 chr3_random 5456299 5457704 -2970577 - L1PA8A LINE L1 -21 6110 4738 4269 238 119 16 chr3_random 5457742 5459199 -2969082 - L1 LINE L1 -2346 5219 3614 16357 192 62 5 chr3_random 5459206 5462362 -2965919 - L1 LINE L1 -4163 3402 59 2454 123 19 0 chr3_random 5462362 5462728 -2965553 + THE1C LTR MaLR 3 375 0 16357 192 62 5 chr3_random 5462728 5462772 -2965509 - L1 LINE L1 -7506 59 19 21 0 0 0 chr3_random 5462781 5462802 -2965479 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3_random 5463324 5463348 -2964933 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3_random 5463608 5463637 -2964644 + AT_rich Low_complexity Low_complexity 1 29 0 3757 232 122 33 chr3_random 5464209 5464288 -2963993 + L1MCb LINE L1 131 201 -6363 1971 134 0 20 chr3_random 5464288 5464593 -2963688 - AluSx SINE Alu -13 299 1 3757 232 122 33 chr3_random 5464593 5466801 -2961480 + L1MCb LINE L1 201 2614 -3950 28 29 0 0 chr3_random 5467290 5467325 -2960956 + AT_rich Low_complexity Low_complexity 1 35 0 227 152 22 0 chr3_random 5468059 5468105 -2960176 + A-rich Low_complexity Low_complexity 4 50 0 1254 308 86 20 chr3_random 5468692 5469397 -2958884 + L2 LINE L2 2471 3229 -84 291 28 0 0 chr3_random 5469444 5469480 -2958801 + (TG)n Simple_repeat Simple_repeat 1 36 0 366 357 52 37 chr3_random 5469523 5469792 -2958489 - L2 LINE L2 -606 2708 2436 2369 74 3 0 chr3_random 5469823 5470120 -2958161 + AluY SINE Alu 1 298 -13 773 215 6 40 chr3_random 5470170 5470347 -2957934 + MER6B DNA MER2_type 1 171 -39 263 310 65 26 chr3_random 5470601 5470756 -2957525 + HERVL LTR ERVL 3726 3886 -1768 197 291 36 0 chr3_random 5470849 5470904 -2957377 - L2 LINE L2 -863 2451 2395 394 276 0 0 chr3_random 5471175 5471273 -2957008 + L1PA16 LINE L1 2084 2181 -5400 7365 226 47 26 chr3_random 5471492 5474002 -2954279 + L1PA16 LINE L1 2182 4638 -2966 1955 119 3 7 chr3_random 5474002 5474287 -2953994 + AluY SINE Alu 1 326 0 379 0 0 0 chr3_random 5474287 5474329 -2953952 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 7365 226 47 26 chr3_random 5474329 5474434 -2953847 + L1PA16 LINE L1 4638 4739 -2865 1450 218 3 0 chr3_random 5474434 5474719 -2953562 + AluSx SINE Alu 1 286 -16 207 0 0 0 chr3_random 5474719 5474742 -2953539 + (GGGAA)n Simple_repeat Simple_repeat 3 25 0 7365 226 47 26 chr3_random 5474742 5476336 -2951945 + L1PA16 LINE L1 4739 6554 -1050 2022 121 0 22 chr3_random 5476336 5476650 -2951631 - AluSx SINE Alu -3 309 3 7365 226 47 26 chr3_random 5476650 5477723 -2950558 + L1PA16 LINE L1 6554 7603 -1 278 276 24 73 chr3_random 5477733 5477856 -2950425 - L2 LINE L2 -903 2411 2295 251 307 88 37 chr3_random 5478011 5478226 -2950055 + L2 LINE L2 3022 3247 -66 24 0 0 0 chr3_random 5478383 5478407 -2949874 + AT_rich Low_complexity Low_complexity 1 24 0 276 320 73 44 chr3_random 5478407 5478860 -2949421 + L1M4 LINE L1 4531 4996 -1150 2978 179 15 5 chr3_random 5479073 5479665 -2948616 + L1MC1 LINE L1 5734 6331 -2 368 290 120 27 chr3_random 5479676 5480030 -2948251 + L1M4 LINE L1 5218 5605 -573 1572 201 13 3 chr3_random 5480182 5480481 -2947800 - AluJo SINE Alu -5 307 6 23 0 0 0 chr3_random 5480617 5480640 -2947641 + AT_rich Low_complexity Low_complexity 1 23 0 603 275 75 0 chr3_random 5481410 5481570 -2946711 + MER5B DNA MER1_type 1 172 -6 589 216 37 86 chr3_random 5481606 5481926 -2946355 + MLT1D LTR MaLR 1 286 -181 202 391 23 0 chr3_random 5482177 5482310 -2945971 - MIR SINE MIR -126 136 1 657 233 40 34 chr3_random 5482354 5482530 -2945751 + MER45A DNA AcHobo 1 177 -1 740 246 42 17 chr3_random 5482647 5482883 -2945398 + HsTC2 DNA Tc2 13 254 -1644 595 226 33 47 chr3_random 5482911 5483123 -2945158 - MER110 LTR ERV1 -25 466 258 753 282 58 34 chr3_random 5483530 5483910 -2944371 + HsTC2 DNA Tc2 408 796 -1102 550 275 116 10 chr3_random 5483925 5484227 -2944054 + HsTC2 DNA Tc2 1524 1857 -41 335 319 9 0 chr3_random 5486943 5487056 -2941225 - MERVL LTR ERVL -1208 4556 4443 187 246 16 16 chr3_random 5487061 5487122 -2941159 - L2 LINE L2 -129 3184 3124 670 338 58 34 chr3_random 5487133 5487809 -2940472 - MERVL LTR ERVL -1184 3812 3351 283 358 7 7 chr3_random 5487892 5488029 -2940252 - MERVL LTR ERVL -1967 3518 3382 1615 220 19 8 chr3_random 5488247 5488606 -2939675 - MLT1A1 LTR MaLR 0 365 3 3672 102 9 6 chr3_random 5489185 5489732 -2938549 - L1MA1 LINE L1 -314 5988 5440 36 40 0 0 chr3_random 5489741 5489791 -2938490 + AT_rich Low_complexity Low_complexity 1 50 0 769 48 19 0 chr3_random 5490399 5490503 -2937778 - L1PA13 LINE L1 -6 6157 6052 21 57 0 0 chr3_random 5490987 5491022 -2937259 + AT_rich Low_complexity Low_complexity 1 35 0 2166 217 2 2 chr3_random 5491092 5491502 -2936779 + MER47B DNA MER2_type 6 415 -3 22 0 0 0 chr3_random 5492456 5492478 -2935803 + AT_rich Low_complexity Low_complexity 1 22 0 289 223 8 53 chr3_random 5493534 5493666 -2934615 - MER20 DNA MER1_type -1 218 1 183 80 0 0 chr3_random 5493705 5493730 -2934551 + (TG)n Simple_repeat Simple_repeat 1 25 0 536 338 55 53 chr3_random 5494201 5494674 -2933607 - L2 LINE L2 0 3313 2840 8400 152 31 3 chr3_random 5494879 5496289 -2931992 + Tigger1 DNA MER2_type 4 1453 -965 3869 139 19 8 chr3_random 5496271 5496897 -2931384 + Tigger1 DNA MER2_type 1653 2285 -133 * 371 277 5 99 chr3_random 5497297 5497499 -2930782 - L2 LINE L2 -18 3295 3113 22 0 0 0 chr3_random 5498364 5498386 -2929895 + AT_rich Low_complexity Low_complexity 1 22 0 43 35 0 0 chr3_random 5498442 5498499 -2929782 + AT_rich Low_complexity Low_complexity 1 57 0 2253 122 0 6 chr3_random 5499172 5499484 -2928797 + AluSx SINE Alu 2 311 -1 363 292 49 71 chr3_random 5499506 5499773 -2928508 + L1M4 LINE L1 4578 4838 -1308 28 79 0 0 chr3_random 5499834 5499897 -2928384 + AT_rich Low_complexity Low_complexity 1 63 0 879 162 0 0 chr3_random 5500439 5500622 -2927659 - AluSg/x SINE Alu 0 322 140 652 238 27 22 chr3_random 5501957 5502142 -2926139 + MER5A DNA MER1_type 3 188 -1 25 51 0 0 chr3_random 5502920 5502959 -2925322 + AT_rich Low_complexity Low_complexity 1 39 0 223 313 15 92 chr3_random 5503671 5503802 -2924479 - MER5A DNA MER1_type -6 183 63 2109 160 5 13 chr3_random 5503891 5504266 -2924015 + THE1C LTR MaLR 4 375 0 2371 195 59 76 chr3_random 5504266 5505029 -2923252 + THE1C-int LTR MaLR 1 750 -830 930 198 16 16 chr3_random 5505031 5505213 -2923068 - MER5A DNA MER1_type -7 182 1 206 338 32 100 chr3_random 5505390 5505701 -2922580 - L2 LINE L2 -420 2894 2605 1076 149 60 5 chr3_random 5506125 5506326 -2921955 - L1MB3 LINE L1 -143 6040 5829 3767 256 99 32 chr3_random 5506834 5507236 -2921045 - L1MB3 LINE L1 -2 6181 5807 345 24 0 0 chr3_random 5507236 5507278 -2921003 + (CA)n Simple_repeat Simple_repeat 2 43 0 3767 256 99 32 chr3_random 5507278 5509509 -2918772 - L1MB3 LINE L1 -376 5807 3383 330 214 145 10 chr3_random 5509668 5509807 -2918474 + MLT1H1 LTR MaLR 390 555 0 23 97 0 0 chr3_random 5511428 5511500 -2916781 + AT_rich Low_complexity Low_complexity 1 72 0 21 36 0 0 chr3_random 5511815 5511843 -2916438 + AT_rich Low_complexity Low_complexity 1 28 0 456 265 49 6 chr3_random 5512460 5512622 -2915659 + LTR65 LTR ERV1 1 169 -500 31 26 0 0 chr3_random 5513088 5513126 -2915155 + AT_rich Low_complexity Low_complexity 1 38 0 313 194 85 8 chr3_random 5513850 5513995 -2914286 - MER53 DNA DNA 0 189 3 275 196 0 0 chr3_random 5514304 5514360 -2913921 + Alu SINE Alu 246 301 0 1646 178 81 136 chr3_random 5514835 5515541 -2912740 - MER4A LTR ERV1 0 872 1 562 246 69 54 chr3_random 5515558 5515761 -2912520 - MER4A-int LTR ERV1 -14 6584 6379 1019 286 73 57 chr3_random 5516107 5516760 -2911521 - PABL_B-int LTR ERV1 -447 6675 6012 300 309 6 72 chr3_random 5517004 5517083 -2911198 - PABL_B-int LTR ERV1 -1365 5757 5674 207 0 0 0 chr3_random 5517083 5517106 -2911175 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 300 309 6 72 chr3_random 5517106 5517207 -2911074 - PABL_B-int LTR ERV1 -1448 5674 5589 310 294 14 63 chr3_random 5718311 5718454 -2709827 + HAL1b LINE L1 753 888 -460 187 333 18 0 chr3_random 5718784 5718841 -2709440 - L2 LINE L2 0 3272 3215 513 329 104 56 chr3_random 5719117 5719674 -2708607 - L2 LINE L2 -376 2938 2355 4760 25 0 0 chr3_random 5719774 5720335 -2707946 + L1PA2 LINE L1 5593 6153 -2 311 0 0 25 chr3_random 5720357 5720397 -2707884 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 690 124 41 28 chr3_random 5720684 5720829 -2707452 + HUERS-P3b LTR ERV1 4052 4198 -3339 569 255 73 57 chr3_random 5720827 5721074 -2707207 + HUERS-P3b LTR ERV1 627 877 -6939 * 513 306 25 50 chr3_random 5721084 5721365 -2706916 + HUERS-P3b LTR ERV1 1549 1822 -5269 307 307 24 64 chr3_random 5722015 5722143 -2706138 + HUERS-P3b LTR ERV1 2342 2474 -4202 1683 157 18 0 chr3_random 5722143 5722423 -2705858 + AluSx SINE Alu 1 285 -27 243 0 0 0 chr3_random 5722424 5722451 -2705830 + (CA)n Simple_repeat Simple_repeat 2 28 0 307 307 24 64 chr3_random 5722451 5722649 -2705632 + HUERS-P3b LTR ERV1 2473 2657 -4019 7104 57 0 2 chr3_random 5723231 5724405 -2703876 + L1PA5 LINE L1 4983 6152 -2 22 35 0 0 chr3_random 5725562 5725591 -2702690 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr3_random 5725904 5725931 -2702350 + AT_rich Low_complexity Low_complexity 1 27 0 433 239 145 50 chr3_random 5727082 5727241 -2701040 - MER5B DNA MER1_type 0 178 5 254 345 11 11 chr3_random 5727269 5727356 -2700925 - MER5A DNA MER1_type -21 168 82 206 250 219 50 chr3_random 5727598 5727758 -2700523 + MIR SINE MIR 20 206 -56 433 282 141 6 chr3_random 5727984 5728140 -2700141 + L2 LINE L2 2048 2224 -1090 323 344 47 33 chr3_random 5728191 5728406 -2699875 + MER90 LTR ERV1 397 614 0 481 237 167 13 chr3_random 5728406 5728562 -2699719 + L2 LINE L2 3129 3308 -5 22 35 0 0 chr3_random 5728818 5728847 -2699434 + AT_rich Low_complexity Low_complexity 1 29 0 2243 175 74 93 chr3_random 5729591 5730215 -2698066 + LTR9 LTR ERV1 1 612 0 612 219 53 26 chr3_random 5730311 5730462 -2697819 + HUERS-P3b LTR ERV1 409 563 -6855 3692 208 80 37 chr3_random 5730474 5731715 -2696566 + HUERS-P3b LTR ERV1 732 1865 -5553 287 336 35 14 chr3_random 5731827 5731970 -2696311 + L1ME3A LINE L1 3980 4125 -2021 21 36 0 0 chr3_random 5732142 5732170 -2696111 + AT_rich Low_complexity Low_complexity 1 28 0 1522 156 52 15 chr3_random 5732314 5732606 -2695675 - AluSg SINE Alu 0 302 1 1893 291 97 22 chr3_random 5732606 5733980 -2694301 + L1ME3A LINE L1 4681 6160 -10 608 323 22 49 chr3_random 5733995 5734484 -2693797 + HAL1b LINE L1 513 988 -360 255 61 0 0 chr3_random 5734846 5734879 -2693402 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1877 134 0 7 chr3_random 5734881 5735164 -2693117 - AluSx SINE Alu -31 281 1 1056 266 45 64 chr3_random 5735171 5735611 -2692670 - LTR16A1 LTR ERVL -11 446 15 22 35 0 0 chr3_random 5736062 5736091 -2692190 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr3_random 5737001 5737037 -2691244 + AT_rich Low_complexity Low_complexity 1 36 0 21 95 0 0 chr3_random 5737277 5737340 -2690941 + AT_rich Low_complexity Low_complexity 1 63 0 23 78 0 0 chr3_random 5737667 5737718 -2690563 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr3_random 5738254 5738275 -2690006 + AT_rich Low_complexity Low_complexity 1 21 0 1732 163 0 35 chr3_random 5738338 5738651 -2689630 + AluJo SINE Alu 1 302 -10 423 175 0 0 chr3_random 5739258 5739338 -2688943 - AluS SINE Alu -1 309 230 920 87 16 0 chr3_random 5739381 5739507 -2688774 - BC200 scRNA scRNA -72 128 1 3817 88 25 0 chr3_random 5739727 5740247 -2688034 + HUERS-P3b LTR ERV1 2111 2643 -4775 2150 189 31 3 chr3_random 5740249 5740636 -2687645 - LTR8 LTR ERV1 -253 438 41 1127 218 50 4 chr3_random 5740642 5740881 -2687400 - LTR8 LTR ERV1 -441 250 1 10764 131 26 12 chr3_random 5740881 5742775 -2685506 + HUERS-P3 LTR ERV1 1788 5026 -2392 1065 107 7 0 chr3_random 5742774 5742924 -2685357 + HUERS-P3 LTR ERV1 8768 8918 -1 * 2549 185 87 41 chr3_random 5742924 5743509 -2684772 + LTR9 LTR ERV1 1 612 0 3791 149 42 13 chr3_random 5743671 5744364 -2683917 - L1MA3 LINE L1 0 6305 5593 195 42 0 0 chr3_random 5744364 5744388 -2683893 + (T)n Simple_repeat Simple_repeat 1 24 0 2426 223 114 51 chr3_random 5744508 5744532 -2683749 - L1MCa LINE L1 -4062 2683 2662 225 65 0 0 chr3_random 5744532 5744563 -2683718 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2426 223 114 51 chr3_random 5744563 5745927 -2682354 - L1MCa LINE L1 -4083 2662 1101 592 306 52 26 chr3_random 5745921 5746192 -2682089 - L1MCa LINE L1 -5765 280 3 * 40280 39 27 2 chr3_random 5746338 5751367 -2676914 + L1P LINE L1 1 5154 -992 13364 216 33 20 chr3_random 5751492 5751901 -2676380 - L1MA2 LINE L1 -289 7434 7032 1832 158 30 3 chr3_random 5751901 5752204 -2676077 - AluSx SINE Alu -1 311 1 13364 216 33 20 chr3_random 5752204 5752809 -2675472 - L1MA2 LINE L1 -691 7032 6437 533 125 0 0 chr3_random 5752809 5752889 -2675392 - MADE1 DNA Mariner 0 80 1 13364 216 33 20 chr3_random 5752889 5758408 -2669873 - L1MA2 LINE L1 -1286 6437 14 1154 219 66 46 chr3_random 5758667 5759059 -2669222 + LTR37B LTR ERV1 6 405 -63 24 0 0 0 chr3_random 5759411 5759435 -2668846 + AT_rich Low_complexity Low_complexity 1 24 0 817 236 139 40 chr3_random 5759789 5760207 -2668074 + Charlie1b DNA MER1_type 28 517 -6 297 220 0 0 chr3_random 5760586 5760636 -2667645 - AluJ/monomer SINE Alu -248 53 4 27 0 0 0 chr3_random 5760640 5760667 -2667614 + AT_rich Low_complexity Low_complexity 1 27 0 357 313 44 25 chr3_random 5760705 5760865 -2667416 + HAL1b LINE L1 57 219 -1129 355 313 191 21 chr3_random 5761265 5761594 -2666687 + L1MCa LINE L1 792 1176 -5250 340 279 52 26 chr3_random 5761649 5761803 -2666478 + L1MCa LINE L1 1304 1461 -4967 21 0 0 0 chr3_random 5761855 5761876 -2666405 + AT_rich Low_complexity Low_complexity 1 21 0 2115 83 35 0 chr3_random 5762058 5762347 -2665934 + AluY SINE Alu 1 299 -12 418 340 98 16 chr3_random 5762444 5762759 -2665522 + L1MCa LINE L1 2103 2443 -4164 457 299 63 12 chr3_random 5762807 5763138 -2665143 + L1MCa LINE L1 2503 2850 -3576 252 268 65 16 chr3_random 5763341 5763464 -2664817 + L1MCa LINE L1 3888 4016 -2410 6452 36 2 0 chr3_random 5763573 5764359 -2663922 - L1P LINE L1 -3885 2261 1474 17687 32 0 1 chr3_random 5764359 5767251 -2661030 + L1PA2 LINE L1 3264 6154 -1 704 136 0 0 chr3_random 5767290 5767393 -2660888 - MER34 LTR ERV1 -439 103 1 31 68 0 0 chr3_random 5767654 5767713 -2660568 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr3_random 5767887 5767908 -2660373 + AT_rich Low_complexity Low_complexity 1 21 0 325 295 34 0 chr3_random 5768661 5768745 -2659536 + AluJ/FLAM SINE Alu 1 62 -240 574 147 40 33 chr3_random 5768745 5768895 -2659386 - L1MDa LINE L1 -1721 4819 4669 21 82 0 0 chr3_random 5769020 5769069 -2659212 + AT_rich Low_complexity Low_complexity 1 49 0 1116 185 139 19 chr3_random 5769302 5769561 -2658720 - MER93b LTR ERV1 -2 371 82 876 293 56 12 chr3_random 5769917 5770433 -2657848 - L1MDa LINE L1 -2428 4112 3574 1847 278 87 35 chr3_random 5770458 5771698 -2656583 - L1MDa LINE L1 -3106 3434 2260 1728 155 0 42 chr3_random 5771698 5772008 -2656273 - AluSx SINE Alu -15 297 1 1847 278 87 35 chr3_random 5772008 5772116 -2656165 - L1MDa LINE L1 -4280 2260 2159 2994 119 71 4 chr3_random 5772116 5772595 -2655686 - MER9 LTR ERVK 0 511 1 1847 278 87 35 chr3_random 5772595 5773435 -2654846 - L1MDa LINE L1 -4381 2159 1132 21 36 0 0 chr3_random 5774615 5774643 -2653638 + AT_rich Low_complexity Low_complexity 1 28 0 282 321 96 43 chr3_random 5777731 5777918 -2650363 + MIR SINE MIR 65 261 -1 277 324 9 48 chr3_random 5778693 5778798 -2649483 + MIR SINE MIR 14 114 -148 360 0 0 0 chr3_random 5778940 5778980 -2649301 + (TG)n Simple_repeat Simple_repeat 2 41 0 1160 138 28 113 chr3_random 5780030 5780312 -2647969 - Tigger2 DNA MER2_type 0 2718 2461 3801 166 55 1 chr3_random 5780377 5781084 -2647197 - Tigger2 DNA MER2_type -1973 745 1 22 0 0 0 chr3_random 5782198 5782220 -2646061 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3_random 5782305 5782333 -2645948 + AT_rich Low_complexity Low_complexity 1 28 0 2041 199 36 40 chr3_random 5783654 5784156 -2644125 - L1MA8 LINE L1 -3 7248 6749 2296 221 37 13 chr3_random 5784165 5785273 -2643008 - L1MA8 LINE L1 -837 6269 5211 * 4627 225 39 39 chr3_random 5785269 5786613 -2641668 + L1 LINE L1 3363 4707 -1439 562 254 0 0 chr3_random 5786648 5786790 -2641491 - L1MA8 LINE L1 -3956 3151 3010 * 1663 290 93 18 chr3_random 5786786 5787461 -2640820 - L1MA8 LINE L1 -6298 732 7 245 298 92 0 chr3_random 5787570 5787711 -2640570 + HAL1b LINE L1 1183 1336 -12 204 159 0 23 chr3_random 5788109 5788153 -2640128 + T-rich Low_complexity Low_complexity 1 43 0 1805 219 25 39 chr3_random 5789275 5789713 -2638568 - MER54A LTR ERVL 0 901 470 2235 280 54 25 chr3_random 5791284 5792264 -2636017 - L1ME3A LINE L1 0 6170 5154 2239 102 7 0 chr3_random 5792264 5792559 -2635722 + AluY SINE Alu 1 297 -14 2235 280 54 25 chr3_random 5792559 5792688 -2635593 - L1ME3A LINE L1 -1016 5154 5030 200 322 44 33 chr3_random 5794072 5794162 -2634119 + MIR SINE MIR 60 150 -58 21 57 0 0 chr3_random 5794311 5794346 -2633935 + AT_rich Low_complexity Low_complexity 1 35 0 557 311 53 15 chr3_random 5794459 5794665 -2633616 + MIR SINE MIR 38 251 -11 1104 237 99 14 chr3_random 5794895 5795250 -2633031 - MLT1C LTR MaLR 0 467 83 23 0 0 0 chr3_random 5796521 5796544 -2631737 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3_random 5797961 5797996 -2630285 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3_random 5799129 5799151 -2629130 + AT_rich Low_complexity Low_complexity 1 22 0 1058 222 77 50 chr3_random 5800715 5801053 -2627228 + MLT1A2 LTR MaLR 1 347 -27 433 224 80 8 chr3_random 5802705 5802830 -2625451 - L1MD2 LINE L1 -18 6341 6208 922 137 98 64 chr3_random 5802998 5803232 -2625049 + L1MA8 LINE L1 6046 6287 -4 2135 94 10 7 chr3_random 5803288 5803586 -2624695 - AluSc SINE Alu -9 300 2 24 32 0 0 chr3_random 5803605 5803636 -2624645 + AT_rich Low_complexity Low_complexity 1 31 0 1827 214 27 8 chr3_random 5805179 5805219 -2623062 - MLT2B1 LTR ERVL 0 520 482 510 17 0 0 chr3_random 5805219 5805278 -2623003 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 1827 214 27 8 chr3_random 5805278 5805608 -2622673 - MLT2B1 LTR ERVL -38 482 143 1313 148 65 18 chr3_random 5805608 5806099 -2622182 + LTR60 LTR ERV1 1 586 0 399 240 25 108 chr3_random 5805952 5806156 -2622125 + TAR1 Satellite telomeric 44 230 -1881 * 729 237 6 18 chr3_random 5806228 5806397 -2621884 - MLT2B1 LTR ERVL -348 167 1 207 293 0 17 chr3_random 5807199 5807257 -2621024 + L2 LINE L2 3161 3217 -55 522 301 25 6 chr3_random 5807339 5807497 -2620784 + LTR33 LTR ERVL 5 165 -356 1525 219 94 13 chr3_random 5807497 5808039 -2620242 - LTR48B LTR ERV1 0 644 1 459 264 51 34 chr3_random 5808053 5808231 -2620050 + LTR33 LTR ERVL 190 370 -151 21 0 0 0 chr3_random 5808292 5808313 -2619968 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3_random 5809847 5809868 -2618413 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 563 236 240 24 chr3_random 5810031 5810239 -2618042 - MIR SINE MIR -3 259 7 1920 142 0 40 chr3_random 5810876 5811199 -2617082 - AluSx SINE Alu -2 310 1 411 336 69 30 chr3_random 5811364 5811626 -2616655 + L1ME LINE L1 5259 5530 -634 21 0 0 0 chr3_random 5812145 5812166 -2616115 + AT_rich Low_complexity Low_complexity 1 21 0 309 109 0 0 chr3_random 5812742 5812797 -2615484 + (TG)n Simple_repeat Simple_repeat 2 56 0 598 243 83 75 chr3_random 5813006 5813393 -2614888 + MLT1B LTR MaLR 1 390 0 501 311 58 11 chr3_random 5813585 5813775 -2614506 + MIR SINE MIR 63 261 -1 36 53 0 0 chr3_random 5813869 5813926 -2614355 + AT_rich Low_complexity Low_complexity 1 57 0 226 341 81 17 chr3_random 5814135 5814308 -2613973 + MIR SINE MIR 63 246 -16 252 213 0 0 chr3_random 5814450 5814497 -2613784 + MER112 DNA MER1_type 20 66 -194 284 284 0 10 chr3_random 5814632 5814734 -2613547 + (TA)n Simple_repeat Simple_repeat 2 102 0 842 271 94 39 chr3_random 5814958 5815393 -2612888 - MLT1H LTR MaLR 0 549 91 2170 167 82 0 chr3_random 5816032 5816421 -2611860 - MER34 LTR ERV1 -2 540 120 7696 20 1 0 chr3_random 5816428 5817357 -2610924 - L1P LINE L1 -2884 3262 2333 261 273 133 47 chr3_random 5817485 5817613 -2610668 + L2 LINE L2 3155 3293 -20 4592 226 31 9 chr3_random 5818961 5820178 -2608103 + L1 LINE L1 2855 4098 -2048 22 0 0 0 chr3_random 5820183 5820205 -2608076 + AT_rich Low_complexity Low_complexity 1 22 0 254 300 0 14 chr3_random 5820381 5820451 -2607830 + L1ME LINE L1 5475 5543 -578 324 102 0 0 chr3_random 5820685 5820734 -2607547 + (CA)n Simple_repeat Simple_repeat 2 50 0 7220 154 48 2 chr3_random 5820741 5821978 -2606303 + HSMAR2 DNA Mariner 10 1302 0 201 125 0 50 chr3_random 5821984 5822024 -2606257 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 204 139 0 28 chr3_random 5822238 5822274 -2606007 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 304 329 26 20 chr3_random 5822294 5822446 -2605835 - L1ME2 LINE L1 -279 5885 5733 195 42 0 0 chr3_random 5822449 5822473 -2605808 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 393 287 54 12 chr3_random 5822562 5822729 -2605552 - MIR SINE MIR -74 188 15 1643 180 7 24 chr3_random 5822888 5823183 -2605098 + AluJb SINE Alu 7 296 -16 983 291 34 13 chr3_random 5824025 5824492 -2603789 + L1ME3A LINE L1 5388 5864 -306 208 268 28 0 chr3_random 5824756 5824827 -2603454 + A-rich Low_complexity Low_complexity 2 74 0 4865 108 133 0 chr3_random 5824877 5825606 -2602675 + LTR12 LTR ERV1 1 826 0 6483 135 69 18 chr3_random 5826854 5827946 -2600335 - THE1C-int LTR MaLR -433 1147 1 2371 133 25 3 chr3_random 5827946 5828313 -2599968 - THE1C LTR MaLR 0 375 1 224 128 0 21 chr3_random 5828321 5828368 -2599913 + (TA)n Simple_repeat Simple_repeat 1 46 0 188 247 182 13 chr3_random 5828397 5828474 -2599807 - MIR SINE MIR -113 149 60 250 309 10 31 chr3_random 5829212 5829309 -2598972 + MER5B DNA MER1_type 4 98 -80 28 29 0 0 chr3_random 5829887 5829922 -2598359 + AT_rich Low_complexity Low_complexity 1 35 0 279 305 44 53 chr3_random 5829924 5830189 -2598092 + L1M4c LINE L1 66 1291 -5736 1318 263 51 20 chr3_random 5830357 5830867 -2597414 + L1M4c LINE L1 2024 2549 -4559 1197 277 38 37 chr3_random 5830916 5831285 -2596996 + L1M4c LINE L1 2727 3094 -4012 2064 140 3 0 chr3_random 5831285 5831585 -2596696 - AluSx SINE Alu -11 301 1 1197 277 38 37 chr3_random 5831585 5832187 -2596094 + L1M4c LINE L1 3094 3699 -3407 714 264 66 38 chr3_random 5832187 5832530 -2595751 + MSTD LTR MaLR 1 396 0 2964 239 67 29 chr3_random 5832531 5833657 -2594624 + L1M4c LINE L1 3696 4863 -2243 218 54 0 27 chr3_random 5833657 5833694 -2594587 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2423 55 18 30 chr3_random 5833694 5834023 -2594258 - LTR17 LTR ERV1 -455 325 1 2306 68 0 0 chr3_random 5834023 5834315 -2593966 - HERV17 LTR ERV1 0 8626 8335 272 79 0 0 chr3_random 5834305 5834343 -2593938 - HERV17 LTR ERV1 -1078 7548 7511 * 8597 54 1 0 chr3_random 5834337 5835391 -2592890 - HERV17 LTR ERV1 -2607 6019 4965 27250 55 24 5 chr3_random 5835492 5838966 -2589315 - HERV17 LTR ERV1 -4182 4444 954 1781 222 18 14 chr3_random 5838968 5839414 -2588867 + L1M4c LINE L1 4860 5307 -1799 854 192 39 35 chr3_random 5839398 5839601 -2588680 - L1PA16 LINE L1 0 6166 5963 * 260 220 0 0 chr3_random 5839605 5839664 -2588617 - L1M4 LINE L1 -1765 4381 4323 1593 219 62 4 chr3_random 5839682 5840153 -2588128 + L1M4c LINE L1 5287 5784 -1322 1823 155 48 17 chr3_random 5840586 5841295 -2586986 + L1MA2 LINE L1 5485 6304 0 1224 244 35 35 chr3_random 5841414 5841844 -2586437 + L1M4c LINE L1 5829 6258 -848 284 254 8 0 chr3_random 5841855 5841973 -2586308 + (TA)n Simple_repeat Simple_repeat 1 119 0 307 258 21 21 chr3_random 5841975 5842068 -2586213 - L1MC4 LINE L1 -1339 6703 6611 218 233 0 0 chr3_random 5842068 5842111 -2586170 + (TA)n Simple_repeat Simple_repeat 2 44 0 267 273 23 0 chr3_random 5842113 5842201 -2586080 - L1MC4 LINE L1 -1339 6703 6614 239 267 47 0 chr3_random 5842218 5842304 -2585977 + L1MC4 LINE L1 6613 6702 -1340 223 205 0 0 chr3_random 5842311 5842350 -2585931 + (TA)n Simple_repeat Simple_repeat 1 39 0 277 289 0 0 chr3_random 5842350 5842440 -2585841 + L1MC4 LINE L1 6614 6703 -1339 263 300 0 0 chr3_random 5842446 5842536 -2585745 + L1MC4 LINE L1 6614 6703 -1339 237 246 0 0 chr3_random 5842537 5842602 -2585679 + (TATG)n Simple_repeat Simple_repeat 2 66 0 230 229 0 62 chr3_random 5842604 5842700 -2585581 - L1MC4 LINE L1 -1339 6703 6614 * 249 259 47 0 chr3_random 5842664 5842749 -2585532 + L1MC4 LINE L1 6614 6702 -1340 328 211 19 0 chr3_random 5842754 5842776 -2585505 + (TA)n Simple_repeat Simple_repeat 2 22 -85 2266 70 3 11 chr3_random 5842776 5843063 -2585218 - AluY SINE Alu -24 287 3 328 211 19 0 chr3_random 5843063 5843144 -2585137 + (TA)n Simple_repeat Simple_repeat 22 107 0 527 176 0 76 chr3_random 5843144 5843275 -2585006 + L1M3 LINE L1 5320 5440 -728 6156 206 41 82 chr3_random 5843280 5844952 -2583329 + L1M1 LINE L1 16 1618 -5947 6079 219 30 85 chr3_random 5844950 5847054 -2581227 + L1M1 LINE L1 2528 4383 -3182 * 2244 111 0 0 chr3_random 5847054 5847360 -2580921 + AluSc SINE Alu 1 306 -3 6079 219 30 85 chr3_random 5847360 5848474 -2579807 + L1M1 LINE L1 4383 5557 -2008 1312 212 0 48 chr3_random 5848504 5848796 -2579485 + AluJb SINE Alu 13 290 -22 1760 161 58 3 chr3_random 5848798 5849159 -2579122 + L1M1 LINE L1 5796 6176 -1389 570 240 140 0 chr3_random 5849153 5849324 -2578957 - L1 LINE L1 -1022 5124 4930 * 207 139 0 0 chr3_random 5849690 5849726 -2578555 + (TA)n Simple_repeat Simple_repeat 2 37 0 29 0 0 0 chr3_random 5850206 5850235 -2578046 + AT_rich Low_complexity Low_complexity 1 29 0 1283 198 23 12 chr3_random 5850245 5850323 -2577958 + AluSx SINE Alu 47 123 -189 423 0 0 0 chr3_random 5850323 5850370 -2577911 + (CA)n Simple_repeat Simple_repeat 2 48 0 1283 198 23 12 chr3_random 5850370 5850525 -2577756 + AluSx SINE Alu 123 286 -26 189 0 0 0 chr3_random 5850525 5850546 -2577735 + (TCCA)n Simple_repeat Simple_repeat 1 21 0 1283 198 23 12 chr3_random 5850546 5850569 -2577712 + AluSx SINE Alu 286 307 -5 875 277 41 77 chr3_random 5850614 5851131 -2577150 - MER34 LTR ERV1 -25 517 20 1973 241 38 4 chr3_random 5851178 5851676 -2576605 - L1MB2 LINE L1 -36 6135 5621 674 165 0 8 chr3_random 5851670 5851791 -2576490 + L1M1 LINE L1 6228 6347 -1218 * 277 0 94 0 chr3_random 5851792 5851845 -2576436 + (TA)n Simple_repeat Simple_repeat 2 59 0 257 290 29 0 chr3_random 5852664 5852733 -2575548 + L1M3c LINE L1 898 968 -6069 242 286 0 0 chr3_random 5852752 5852815 -2575466 + L1M3c LINE L1 1049 1111 -5926 1644 267 64 63 chr3_random 5852831 5853376 -2574905 + L1M3c LINE L1 1339 1882 -5226 2841 10 0 0 chr3_random 5853376 5853689 -2574592 + AluYb8 SINE Alu 1 313 -5 1644 267 64 63 chr3_random 5853689 5855237 -2573044 + L1M3c LINE L1 1882 3134 -3974 2211 180 38 55 chr3_random 5855249 5855722 -2572559 - MER70-int LTR ERVL -203 4820 4356 1264 208 12 4 chr3_random 5855770 5856011 -2572270 + MER70A-int LTR ERVL 4755 4997 -26 1275 274 84 15 chr3_random 5856049 5856454 -2571827 + MER70A LTR ERVL 4 436 -36 300 186 0 0 chr3_random 5856562 5856621 -2571660 + (CA)n Simple_repeat Simple_repeat 2 60 0 392 167 0 13 chr3_random 5856635 5856713 -2571568 + L1MA9 LINE L1 6225 6301 -11 22 35 0 0 chr3_random 5856746 5856775 -2571506 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3_random 5857288 5857311 -2570970 + AT_rich Low_complexity Low_complexity 1 23 0 4180 169 10 3 chr3_random 5857844 5858550 -2569731 - MER50 LTR ERV1 -23 711 1 2159 113 0 3 chr3_random 5858852 5859162 -2569119 + AluSx SINE Alu 1 309 -3 63 26 0 0 chr3_random 5859723 5859800 -2568481 + AT_rich Low_complexity Low_complexity 1 77 0 290 195 13 0 chr3_random 5860828 5860905 -2567376 + CT-rich Low_complexity Low_complexity 1 78 0 423 319 51 0 chr3_random 5861525 5861663 -2566618 - MIR3 SINE MIR -10 198 54 213 264 185 56 chr3_random 5863181 5863359 -2564922 + L2 LINE L2 3105 3305 -8 189 74 0 0 chr3_random 5864121 5864148 -2564133 + (TC)n Simple_repeat Simple_repeat 2 28 0 414 283 146 23 chr3_random 5866041 5866260 -2562021 + MLT1H1 LTR MaLR 1 246 -344 637 302 13 27 chr3_random 5866287 5866512 -2561769 + MLT1H1 LTR MaLR 315 536 -19 548 210 51 0 chr3_random 5867064 5867202 -2561079 - L1MB7 LINE L1 -20 6164 6020 1050 234 39 45 chr3_random 5867336 5867622 -2560659 + MER68 LTR ERV1 1 284 -278 7259 212 11 14 chr3_random 5867622 5869758 -2558523 + L1PA16 LINE L1 3552 5678 -488 2141 82 3 35 chr3_random 5869758 5870075 -2558206 + AluY SINE Alu 1 307 -4 7259 212 11 14 chr3_random 5870075 5870560 -2557721 + L1PA16 LINE L1 5678 6163 -3 22 0 0 0 chr3_random 5870684 5870706 -2557575 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3_random 5873210 5873231 -2555050 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr3_random 5873415 5873445 -2554836 + AT_rich Low_complexity Low_complexity 1 30 0 2028 135 0 0 chr3_random 5874026 5874323 -2553958 + AluSx SINE Alu 1 297 -15 348 24 0 0 chr3_random 5875078 5875119 -2553162 + (CA)n Simple_repeat Simple_repeat 2 42 0 6674 26 1 0 chr3_random 5876395 5877192 -2551089 - L1PA3 LINE L1 -1101 5045 4248 7464 34 7 0 chr3_random 5877192 5878289 -2549992 + L1PA3 LINE L1 5048 6150 -5 225 0 0 0 chr3_random 5878491 5878516 -2549765 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 5557 211 5 15 chr3_random 5879027 5880338 -2547943 + L1 LINE L1 3660 4956 -1190 4668 172 12 52 chr3_random 5880580 5881829 -2546452 + L1PA16 LINE L1 4959 6158 -8 22 0 0 0 chr3_random 5882643 5882665 -2545616 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3_random 5884151 5884174 -2544107 + AT_rich Low_complexity Low_complexity 1 23 0 204 388 48 0 chr3_random 5884739 5884842 -2543439 - L2 LINE L2 -25 3247 3140 2089 93 3 24 chr3_random 5884939 5885254 -2543027 + AluSp SINE Alu 1 309 0 4258 214 51 10 chr3_random 5886169 5887899 -2540382 + L1PA16 LINE L1 4367 6163 -3 180 241 0 0 chr3_random 5889814 5889872 -2538409 + (CATATA)n Simple_repeat Simple_repeat 1 58 0 26 30 0 0 chr3_random 5889896 5889929 -2538352 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr3_random 5890092 5890116 -2538165 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr3_random 5890518 5890544 -2537737 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 70 0 0 chr3_random 5890694 5890737 -2537544 + AT_rich Low_complexity Low_complexity 1 43 0 303 316 32 0 chr3_random 5892582 5892677 -2535604 + MER94 DNA DNA 26 123 -11 2658 177 42 5 chr3_random 5892909 5893994 -2534287 - L1PA13 LINE L1 0 6163 4863 186 200 0 25 chr3_random 5894528 5894568 -2533713 + MIR SINE MIR 218 256 -6 1145 92 0 20 chr3_random 5895090 5895243 -2533038 + AluSg1 SINE Alu 1 150 -159 231 203 0 54 chr3_random 5895293 5895367 -2532914 + L1MCa LINE L1 1989 2058 -4368 349 302 43 9 chr3_random 5897071 5897187 -2531094 + L2 LINE L2 3193 3312 -1 24 32 0 0 chr3_random 5898757 5898788 -2529493 + AT_rich Low_complexity Low_complexity 1 31 0 6975 136 81 39 chr3_random 5899182 5899824 -2528457 - Tigger1 DNA MER2_type 0 2418 1805 1972 139 0 23 chr3_random 5899824 5900134 -2528147 - AluSx SINE Alu -9 303 1 6975 136 81 39 chr3_random 5900134 5900326 -2527955 - Tigger1 DNA MER2_type -613 1805 1623 2236 111 0 0 chr3_random 5900326 5900624 -2527657 - AluSg SINE Alu -12 298 1 6975 136 81 39 chr3_random 5900624 5901103 -2527178 - Tigger1 DNA MER2_type -795 1623 1048 920 192 85 66 chr3_random 5901607 5901925 -2526356 - MER33 DNA MER1_type 0 324 1 792 303 95 36 chr3_random 5902405 5902980 -2525301 + L2 LINE L2 2648 3269 -44 23 92 0 0 chr3_random 5902984 5903049 -2525232 + AT_rich Low_complexity Low_complexity 1 65 0 4935 157 16 1 chr3_random 5903643 5905466 -2522815 + L1PA15 LINE L1 4311 6159 -6 7205 45 1 6 chr3_random 5905576 5906690 -2521591 + L1PA5 LINE L1 5037 6154 0 1401 137 12 87 chr3_random 5906690 5907019 -2521262 - MER4A LTR ERV1 -39 625 263 511 163 10 10 chr3_random 5907019 5907117 -2521164 - MER4A LTR ERV1 -566 98 1 1687 134 19 4 chr3_random 5907216 5907478 -2520803 + AluSx SINE Alu 28 293 -19 391 340 31 52 chr3_random 5908056 5908250 -2520031 - MIR SINE MIR -10 252 63 25 31 0 0 chr3_random 5908421 5908453 -2519828 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3_random 5908752 5908776 -2519505 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3_random 5909060 5909081 -2519200 + AT_rich Low_complexity Low_complexity 1 21 0 225 328 0 0 chr3_random 5909168 5909232 -2519049 + L2 LINE L2 2375 2438 -876 226 220 165 0 chr3_random 5909315 5909424 -2518857 + MLT1D LTR MaLR 65 191 -314 582 272 28 28 chr3_random 5909452 5909632 -2518649 + MLT1-int LTR MaLR 713 892 -479 1068 272 53 100 chr3_random 5909714 5910225 -2518056 + MLT1-int LTR MaLR 884 1370 -1 519 263 62 24 chr3_random 5910301 5910510 -2517771 + L1MC/D LINE L1 5394 5610 -632 535 301 83 9 chr3_random 5911550 5911766 -2516515 + MIR SINE MIR 31 262 0 280 221 103 0 chr3_random 5911833 5911901 -2516380 + MIR SINE MIR 120 194 -68 27 29 0 0 chr3_random 5912304 5912338 -2515943 + AT_rich Low_complexity Low_complexity 1 34 0 33 56 0 0 chr3_random 5912409 5912463 -2515818 + AT_rich Low_complexity Low_complexity 1 54 0 32 57 0 0 chr3_random 5912630 5912683 -2515598 + AT_rich Low_complexity Low_complexity 1 53 0 21 0 0 0 chr3_random 5912824 5912845 -2515436 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3_random 5912931 5912963 -2515318 + AT_rich Low_complexity Low_complexity 1 32 0 215 0 67 0 chr3_random 5912963 5912993 -2515288 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1124 44 0 0 chr3_random 5912998 5913135 -2515146 - L1PA3 LINE L1 -3 6152 6016 875 253 97 56 chr3_random 5914854 5915337 -2512944 - MLT1D LTR MaLR -2 503 1 1679 186 0 3 chr3_random 5916049 5916339 -2511942 - AluJb SINE Alu -23 289 1 441 55 0 0 chr3_random 5916491 5916546 -2511735 - MER4A LTR ERV1 0 664 610 4827 109 0 14 chr3_random 5916547 5917273 -2511008 - L1P LINE L1 -4368 1778 1063 * 14977 51 6 5 chr3_random 5917268 5919214 -2509067 + L1P LINE L1 2566 4514 -1632 744 135 40 7 chr3_random 5919341 5919499 -2508782 - L1MC/D LINE L1 -730 5575 5436 * 2184 149 14 3 chr3_random 5919488 5919858 -2508423 + L1MA3 LINE L1 5911 6284 -21 1393 231 22 6 chr3_random 5919962 5920274 -2508007 + MER58B DNA MER1_type 24 340 -1 36 40 0 0 chr3_random 5920296 5920346 -2507935 + AT_rich Low_complexity Low_complexity 1 50 0 1940 103 0 35 chr3_random 5920638 5920955 -2507326 - AluSc SINE Alu 0 307 1 2200 184 40 16 chr3_random 5923875 5924304 -2503977 + MLT1C LTR MaLR 27 465 -2 23 78 0 0 chr3_random 5924363 5924414 -2503867 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr3_random 5924744 5924768 -2503513 + AT_rich Low_complexity Low_complexity 1 24 0 2109 220 38 15 chr3_random 5926236 5926755 -2501526 - MER41B LTR ERV1 -10 600 100 1999 274 62 24 chr3_random 5926812 5927516 -2500765 - MER41B-int LTR ERV1 -1 6675 5945 816 194 0 19 chr3_random 5928225 5928380 -2499901 - MER41B-int LTR ERV1 -1848 4828 4677 1794 253 50 15 chr3_random 5928399 5928857 -2499424 - MER66-int LTR ERV1 -4952 1724 1251 752 188 52 101 chr3_random 5929670 5929958 -2498323 - MER66-int LTR ERV1 -5794 882 609 365 255 19 9 chr3_random 5930146 5930252 -2498029 - MER66-int LTR ERV1 -6172 504 398 1404 244 69 39 chr3_random 5930263 5930761 -2497520 - MER41B LTR ERV1 0 597 132 273 29 0 0 chr3_random 5930872 5930906 -2497375 + (CA)n Simple_repeat Simple_repeat 1 34 0 230 290 28 47 chr3_random 5931800 5931907 -2496374 + L2 LINE L2 3209 3313 0 21 36 0 0 chr3_random 5932072 5932100 -2496181 + AT_rich Low_complexity Low_complexity 1 28 0 33 56 0 0 chr3_random 5933268 5933322 -2494959 + AT_rich Low_complexity Low_complexity 1 54 0 203 179 0 0 chr3_random 5933404 5933443 -2494838 + (TAA)n Simple_repeat Simple_repeat 2 40 0 204 211 0 0 chr3_random 5933790 5933828 -2494453 - MIR SINE MIR -157 105 68 565 265 76 40 chr3_random 5933855 5934104 -2494177 - MIR SINE MIR 0 262 5 506 43 14 0 chr3_random 5934274 5934343 -2493938 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 234 294 137 0 chr3_random 5934599 5934701 -2493580 - MIR SINE MIR -70 192 77 379 241 38 44 chr3_random 5935076 5935234 -2493047 + L1ME2 LINE L1 5998 6154 -10 22 56 0 0 chr3_random 5935239 5935275 -2493006 + AT_rich Low_complexity Low_complexity 1 36 0 273 336 38 38 chr3_random 5935634 5935765 -2492516 - L2 LINE L2 -1 3312 3182 22 80 0 0 chr3_random 5937328 5937378 -2490903 + AT_rich Low_complexity Low_complexity 1 50 0 7261 94 14 15 chr3_random 5937950 5939008 -2489273 - MER11C LTR ERVK -14 1057 1 200 134 0 90 chr3_random 5939018 5939085 -2489196 + (TAAAAA)n Simple_repeat Simple_repeat 2 62 0 216 258 0 86 chr3_random 5939572 5939665 -2488616 - MIR SINE MIR -46 216 132 210 396 37 12 chr3_random 5940909 5941073 -2487208 - L2 LINE L2 -576 2738 2571 1337 301 21 38 chr3_random 5941360 5942176 -2486105 - L2 LINE L2 -4 3309 2505 22 0 0 0 chr3_random 5942606 5942628 -2485653 + AT_rich Low_complexity Low_complexity 1 22 0 201 320 90 41 chr3_random 5943796 5943918 -2484363 - L3 LINE CR1 -1118 459 332 21 57 0 0 chr3_random 5943950 5943985 -2484296 + AT_rich Low_complexity Low_complexity 1 35 0 234 299 118 8 chr3_random 5944273 5944332 -2483949 - L1MA10 LINE L1 -18 6316 6258 341 289 46 33 chr3_random 5944332 5944484 -2483797 - L1ME1 LINE L1 -83 6083 5930 349 344 84 53 chr3_random 5944497 5944641 -2483640 - L1ME1 LINE L1 -466 5655 5517 1865 141 61 25 chr3_random 5944641 5945003 -2483278 + THE1C LTR MaLR 1 375 0 349 344 84 53 chr3_random 5945003 5945216 -2483065 - L1ME1 LINE L1 -604 5517 5287 36 82 0 0 chr3_random 5946098 5946183 -2482098 + AT_rich Low_complexity Low_complexity 1 85 0 21 0 0 0 chr3_random 5946948 5946969 -2481312 + AT_rich Low_complexity Low_complexity 1 21 0 194 200 25 0 chr3_random 5947076 5947116 -2481165 - L2 LINE L2 0 3313 3273 62 52 0 0 chr3_random 5947919 5948016 -2480265 + AT_rich Low_complexity Low_complexity 1 97 0 23 33 0 0 chr3_random 5948585 5948615 -2479666 + AT_rich Low_complexity Low_complexity 1 30 0 270 304 14 0 chr3_random 5948648 5948717 -2479564 + MIR SINE MIR 102 171 -91 24 0 0 0 chr3_random 5949362 5949386 -2478895 + AT_rich Low_complexity Low_complexity 1 24 0 28 48 0 0 chr3_random 5951574 5951616 -2476665 + AT_rich Low_complexity Low_complexity 1 42 0 291 54 0 0 chr3_random 5956329 5956366 -2471915 + (TG)n Simple_repeat Simple_repeat 2 38 0 189 0 0 0 chr3_random 5956367 5956388 -2471893 + (TAG)n Simple_repeat Simple_repeat 3 23 0 2297 62 3 37 chr3_random 5957041 5957363 -2470918 - AluY SINE Alu 0 311 1 22 0 0 0 chr3_random 5957478 5957500 -2470781 + AT_rich Low_complexity Low_complexity 1 22 0 401 315 9 0 chr3_random 5958402 5958513 -2469768 - MIR SINE MIR -102 160 49 2035 144 3 0 chr3_random 5958669 5958968 -2469313 - AluSg SINE Alu -10 300 1 953 272 21 21 chr3_random 5959041 5959164 -2469117 - L1MEc LINE L1 -5456 940 818 1798 146 58 25 chr3_random 5959164 5959527 -2468754 + THE1C LTR MaLR 1 375 0 953 272 21 21 chr3_random 5959527 5959738 -2468543 - L1MEc LINE L1 -5577 819 606 383 279 96 15 chr3_random 5959784 5959920 -2468361 + L1MEc LINE L1 526 672 -5724 272 250 31 0 chr3_random 5960043 5960107 -2468174 + MIR SINE MIR 118 183 -79 2032 201 52 35 chr3_random 5960112 5960280 -2468001 - MER82 DNA MER2_type -162 491 327 1787 163 50 47 chr3_random 5960280 5960643 -2467638 + THE1B LTR MaLR 1 364 0 2032 201 52 35 chr3_random 5960643 5960956 -2467325 - MER82 DNA MER2_type -326 327 2 200 244 0 0 chr3_random 5961327 5961368 -2466913 + (TA)n Simple_repeat Simple_repeat 1 41 0 235 152 0 0 chr3_random 5961369 5961415 -2466866 - LTR66 LTR ERVL -171 439 394 372 242 0 0 chr3_random 5961415 5961510 -2466771 + (TA)n Simple_repeat Simple_repeat 2 96 0 305 156 21 83 chr3_random 5961511 5961607 -2466674 + L1MC4 LINE L1 6614 6703 -1339 363 213 0 0 chr3_random 5961610 5961690 -2466591 + (TA)n Simple_repeat Simple_repeat 1 80 0 279 308 0 0 chr3_random 5961809 5961929 -2466352 + (TA)n Simple_repeat Simple_repeat 1 120 0 297 146 21 83 chr3_random 5961930 5962026 -2466255 + L1MC4 LINE L1 6614 6703 -1339 363 213 0 0 chr3_random 5962029 5962109 -2466172 + (TA)n Simple_repeat Simple_repeat 1 80 0 2335 77 0 3 chr3_random 5962110 5962407 -2465874 - AluY SINE Alu -15 296 1 252 0 0 0 chr3_random 5962711 5962739 -2465542 + (TG)n Simple_repeat Simple_repeat 1 28 0 5179 210 45 36 chr3_random 5963059 5963948 -2464333 + L1MC3 LINE L1 5701 6581 -1204 183 80 0 0 chr3_random 5963948 5963973 -2464308 + (TA)n Simple_repeat Simple_repeat 2 26 0 5179 210 45 36 chr3_random 5963973 5963985 -2464296 + L1MC3 LINE L1 6581 6591 -1194 210 37 0 0 chr3_random 5963985 5964012 -2464269 + (CA)n Simple_repeat Simple_repeat 2 28 0 5179 210 45 36 chr3_random 5964012 5964492 -2463789 + L1MC3 LINE L1 6591 7095 -690 1131 300 37 48 chr3_random 5964493 5965060 -2463221 + MER90 LTR ERV1 3 563 -12 328 359 0 47 chr3_random 5965836 5965964 -2462317 + L2 LINE L2 3147 3268 -4 201 182 39 39 chr3_random 5969410 5969487 -2458794 + (TTATA)n Simple_repeat Simple_repeat 2 78 0 1763 171 68 34 chr3_random 5969857 5970209 -2458072 - THE1B LTR MaLR 0 364 1 10635 103 29 6 chr3_random 5970209 5971753 -2456528 - THE1B-int LTR MaLR 0 1580 1 1409 122 14 14 chr3_random 5971753 5971966 -2456315 - THE1B LTR MaLR 0 364 152 19769 37 26 0 chr3_random 5971989 5974372 -2453909 + L1PA4 LINE L1 2919 5341 -814 198 0 0 0 chr3_random 5974372 5974394 -2453887 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 19769 37 26 0 chr3_random 5974394 5975228 -2453053 + L1PA4 LINE L1 5341 6152 -3 516 62 111 0 chr3_random 5975228 5975309 -2452972 + L1PA4 LINE L1 6064 6153 -2 25 0 0 0 chr3_random 5975459 5975484 -2452797 + AT_rich Low_complexity Low_complexity 1 25 0 2003 123 73 28 chr3_random 5976244 5976591 -2451690 - THE1B LTR MaLR -3 454 1 386 294 92 28 chr3_random 5976597 5976973 -2451308 - MLT1G LTR MaLR -54 536 86 30 45 0 0 chr3_random 5977221 5977265 -2451016 + AT_rich Low_complexity Low_complexity 1 44 0 5298 180 26 2 chr3_random 5977546 5978563 -2449718 - L1MA4 LINE L1 -6 6294 5254 4798 178 37 6 chr3_random 5978567 5979570 -2448711 + L1MA4 LINE L1 4198 5231 -915 228 294 41 75 chr3_random 5979605 5979751 -2448530 - MIR SINE MIR -16 246 106 1353 226 106 33 chr3_random 5979757 5980182 -2448099 - LTR40b LTR ERVL -6 456 1 358 281 102 64 chr3_random 5980415 5980789 -2447492 - L1M4 LINE L1 -762 5384 4997 27 0 0 0 chr3_random 5980833 5980860 -2447421 + AT_rich Low_complexity Low_complexity 1 27 0 267 209 44 0 chr3_random 5981787 5981878 -2446403 + (TA)n Simple_repeat Simple_repeat 2 96 0 271 230 79 40 chr3_random 5982100 5982226 -2446055 + L1M4 LINE L1 4478 4608 -1538 310 221 0 26 chr3_random 5983608 5983685 -2444596 - HAL1b LINE L1 -855 493 419 289 188 31 0 chr3_random 5984408 5984472 -2443809 + MER58 DNA MER1_type 167 232 -109 2402 96 3 11 chr3_random 5984472 5984825 -2443456 - L1PA10 LINE L1 -5 6163 5814 24 53 0 0 chr3_random 5985254 5985292 -2442989 + AT_rich Low_complexity Low_complexity 1 38 0 1592 199 113 16 chr3_random 5985387 5985813 -2442468 + MLT1C LTR MaLR 1 467 0 31 0 0 0 chr3_random 5986804 5986835 -2441446 + AT_rich Low_complexity Low_complexity 1 31 0 251 400 21 14 chr3_random 5986895 5987040 -2441241 + MIR SINE MIR 11 156 -106 2243 81 0 14 chr3_random 5987258 5987553 -2440728 + AluY SINE Alu 3 293 -18 772 195 47 0 chr3_random 5987933 5988082 -2440199 + FAM SINE Alu 1 156 -19 10886 171 21 13 chr3_random 5988093 5990055 -2438226 - Tigger1 DNA MER2_type -440 1978 2 1647 189 7 3 chr3_random 5990420 5990717 -2437564 + AluSx SINE Alu 1 298 -14 366 318 101 16 chr3_random 5990829 5991018 -2437263 + L2 LINE L2 2288 2492 -822 219 167 0 0 chr3_random 5991709 5991751 -2436530 + GA-rich Low_complexity Low_complexity 3 44 0 212 0 36 0 chr3_random 5992174 5992202 -2436079 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 28 0 0 0 chr3_random 5994139 5994167 -2434114 + AT_rich Low_complexity Low_complexity 1 28 0 296 271 169 8 chr3_random 5994239 5994357 -2433924 - L2 LINE L2 -17 3255 3119 246 301 43 11 chr3_random 5994815 5994908 -2433373 - MIR SINE MIR -65 197 102 378 271 68 62 chr3_random 5995597 5995774 -2432507 - MER5B DNA MER1_type 0 178 1 306 129 0 0 chr3_random 5995901 5995963 -2432318 + (TG)n Simple_repeat Simple_repeat 2 63 0 724 190 8 0 chr3_random 5996886 5997007 -2431274 - MER5A DNA MER1_type -1 188 67 825 204 10 56 chr3_random 5997010 5997206 -2431075 - MER63B DNA MER1_type -249 187 1 425 275 76 15 chr3_random 5997587 5997718 -2430563 + L2 LINE L2 3169 3307 -6 7521 239 50 19 chr3_random 5998519 6001110 -2427171 + L1MC1 LINE L1 2812 5503 -830 2093 122 0 0 chr3_random 6001110 6001424 -2426857 + AluSp SINE Alu 1 313 0 7521 239 50 19 chr3_random 6001424 6001845 -2426436 + L1MC1 LINE L1 5503 5910 -423 193 133 67 0 chr3_random 6001857 6001932 -2426349 + (TA)n Simple_repeat Simple_repeat 1 80 0 603 229 90 107 chr3_random 6002138 6002706 -2425575 + HERVH LTR ERV1 247 804 -6909 17945 169 57 50 chr3_random 6002708 6007135 -2421146 + HERVH LTR ERV1 458 4915 -2798 1552 169 4 0 chr3_random 6007132 6007399 -2420882 + HERVH LTR ERV1 5749 6016 -1697 * 3140 116 69 24 chr3_random 6007392 6007925 -2420356 + HERVH LTR ERV1 7157 7713 0 1104 221 100 53 chr3_random 6007925 6008355 -2419926 + LTR7 LTR ERV1 1 450 0 3714 261 20 19 chr3_random 6008355 6010003 -2418278 + L1PA15-16 LINE L1 2178 3834 -3015 651 81 0 0 chr3_random 6010009 6010095 -2418186 - AluSp/q SINE Alu -37 276 191 2572 173 24 15 chr3_random 6010095 6010634 -2417647 + L1PB4 LINE L1 5611 6154 -2 439 339 62 26 chr3_random 6010673 6011128 -2417153 + L1ME4a LINE L1 3658 4128 -2018 293 238 24 36 chr3_random 6011154 6011238 -2417043 + L1ME4a LINE L1 4891 4973 -1173 332 281 43 105 chr3_random 6011318 6011670 -2416611 + L1ME4a LINE L1 5055 5384 -762 28 86 0 0 chr3_random 6011703 6011773 -2416508 + AT_rich Low_complexity Low_complexity 1 70 0 380 332 67 49 chr3_random 6011773 6012222 -2416059 + L1ME4a LINE L1 5412 5868 -302 1238 328 60 4 chr3_random 6012579 6013095 -2415186 + MLT1H1 LTR MaLR 4 548 -7 292 323 183 4 chr3_random 6013500 6013757 -2414524 - L2 LINE L2 -347 2967 2665 25 51 0 0 chr3_random 6014273 6014312 -2413969 + AT_rich Low_complexity Low_complexity 1 39 0 968 213 0 5 chr3_random 6014353 6014550 -2413731 - L1 LINE L1 -1118 5028 4833 * 2215 142 11 52 chr3_random 6014497 6014765 -2413516 + L1MA5 LINE L1 5519 5776 -419 180 0 0 0 chr3_random 6014765 6014785 -2413496 + (CA)n Simple_repeat Simple_repeat 2 21 0 2215 142 11 52 chr3_random 6014785 6014969 -2413312 + L1MA5 LINE L1 5776 5966 -229 215 164 45 15 chr3_random 6015147 6015214 -2413067 + (TATAA)n Simple_repeat Simple_repeat 4 72 0 412 240 270 15 chr3_random 6015585 6015789 -2412492 - MIR SINE MIR -4 258 3 234 369 71 48 chr3_random 6016004 6016313 -2411968 + L2 LINE L2 2478 2793 -521 665 267 85 0 chr3_random 6016329 6016505 -2411776 + MER82 DNA MER2_type 1 191 -462 2013 241 0 42 chr3_random 6016939 6017413 -2410868 + MER82 DNA MER2_type 200 653 0 1312 288 38 51 chr3_random 6017675 6018307 -2409974 + MLT1E2 LTR MaLR 1 624 -2 22 80 0 0 chr3_random 6022299 6022349 -2405932 + AT_rich Low_complexity Low_complexity 1 50 0 303 197 38 53 chr3_random 6022434 6022566 -2405715 + L1ME4a LINE L1 5991 6120 -1 581 325 146 18 chr3_random 6022954 6023394 -2404887 + L2 LINE L2 2818 3313 0 927 207 9 9 chr3_random 6024709 6024922 -2403359 + L1MB4 LINE L1 5954 6166 -14 24 32 0 0 chr3_random 6024934 6024965 -2403316 + AT_rich Low_complexity Low_complexity 1 31 0 223 316 61 0 chr3_random 6025202 6025300 -2402981 + L2 LINE L2 2328 2431 -883 232 315 55 79 chr3_random 6025591 6025756 -2402525 - L2 LINE L2 -5 3267 3107 22 35 0 0 chr3_random 6026296 6026325 -2401956 + AT_rich Low_complexity Low_complexity 1 29 0 3394 125 8 0 chr3_random 6027219 6027723 -2400558 + MER75 DNA T2_type 7 514 0 280 312 28 57 chr3_random 6027730 6027977 -2400304 + ERVL LTR ERVL 1093 1332 -4432 1286 318 46 38 chr3_random 6028106 6028783 -2399498 + ERVL LTR ERVL 1509 2190 -3574 24 0 0 0 chr3_random 6029661 6029685 -2398596 + AT_rich Low_complexity Low_complexity 1 24 0 223 175 50 25 chr3_random 6029956 6030036 -2398245 + (TA)n Simple_repeat Simple_repeat 1 82 0 331 309 47 60 chr3_random 6030042 6030191 -2398090 - MIR SINE MIR -28 234 88 26 50 0 0 chr3_random 6030613 6030653 -2397628 + AT_rich Low_complexity Low_complexity 1 40 0 24 0 0 0 chr3_random 6030723 6030747 -2397534 + AT_rich Low_complexity Low_complexity 1 24 0 210 146 21 42 chr3_random 6032414 6032462 -2395819 + T-rich Low_complexity Low_complexity 4 50 0 23 33 0 0 chr3_random 6032597 6032627 -2395654 + AT_rich Low_complexity Low_complexity 1 30 0 213 221 147 44 chr3_random 6034297 6034365 -2393916 - MIR SINE MIR -70 192 118 205 194 15 15 chr3_random 6035469 6035536 -2392745 + (TA)n Simple_repeat Simple_repeat 1 67 0 572 269 123 14 chr3_random 6035762 6035974 -2392307 + MIR SINE MIR 23 257 -5 251 254 0 0 chr3_random 6036253 6036316 -2391965 + MLT1K LTR MaLR 522 584 -4 253 307 108 40 chr3_random 6036929 6037105 -2391176 + MIR SINE MIR 49 236 -26 2435 64 0 10 chr3_random 6037612 6037926 -2390355 - AluY SINE Alu 0 311 1 1938 222 54 27 chr3_random 6037990 6038471 -2389810 + MLT1A1-int LTR MaLR 1203 1714 -10 1127 198 109 133 chr3_random 6038471 6039213 -2389068 + LTR8A LTR ERV1 1 724 -3 1938 222 54 27 chr3_random 6039213 6039225 -2389056 + MLT1A1-int LTR MaLR 1714 1724 0 1542 231 15 6 chr3_random 6039225 6039554 -2388727 + MLT1A1 LTR MaLR 1 332 -33 1307 222 43 0 chr3_random 6039589 6039761 -2388520 - AluJb SINE Alu -10 302 112 447 19 0 0 chr3_random 6039761 6039813 -2388468 + (TTA)n Simple_repeat Simple_repeat 3 54 0 1307 222 43 0 chr3_random 6039813 6039919 -2388362 - AluJb SINE Alu -200 112 12 2982 123 38 6 chr3_random 6039965 6040344 -2387937 + L1MA2 LINE L1 5785 6185 -119 297 0 0 0 chr3_random 6040344 6040377 -2387904 + (CA)n Simple_repeat Simple_repeat 2 34 0 2982 123 38 6 chr3_random 6040377 6040501 -2387780 + L1MA2 LINE L1 6185 6304 0 218 256 105 23 chr3_random 6040558 6040644 -2387637 - MER91B DNA MER1_type -66 124 32 207 0 0 0 chr3_random 6042787 6042810 -2385471 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 692 278 8 29 chr3_random 6042884 6043125 -2385156 + L1ME2 LINE L1 5926 6161 -3 297 0 0 0 chr3_random 6043303 6043336 -2384945 + (TG)n Simple_repeat Simple_repeat 1 33 0 1795 164 124 22 chr3_random 6043479 6043929 -2384352 + LTR54B LTR ERV1 1 496 -2 25 31 0 0 chr3_random 6044373 6044405 -2383876 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr3_random 6045630 6045666 -2382615 + AT_rich Low_complexity Low_complexity 1 36 0 264 252 244 56 chr3_random 6046346 6046616 -2381665 + L1ME LINE L1 5563 5883 -238 2343 206 58 17 chr3_random 6046636 6047174 -2381107 + MER68 LTR ERV1 1 560 -2 41 21 0 0 chr3_random 6047410 6047458 -2380823 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr3_random 6048498 6048533 -2379748 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3_random 6048948 6048983 -2379298 + AT_rich Low_complexity Low_complexity 1 35 0 1653 220 24 65 chr3_random 6050111 6050575 -2377706 + MER31B LTR ERV1 3 447 -19 237 404 88 15 chr3_random 6051014 6051286 -2376995 + L2 LINE L2 2418 2709 -605 753 326 113 27 chr3_random 6051292 6051816 -2376465 + L1MCc LINE L1 26 594 -5829 242 317 61 24 chr3_random 6052116 6052198 -2376083 + L2 LINE L2 3139 3223 -49 2162 97 3 0 chr3_random 6052909 6053197 -2375084 + AluSx SINE Alu 1 289 -23 22 0 0 0 chr3_random 6053983 6054005 -2374276 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr3_random 6054312 6054348 -2373933 + AT_rich Low_complexity Low_complexity 1 36 0 28 71 0 0 chr3_random 6054450 6054506 -2373775 + AT_rich Low_complexity Low_complexity 1 56 0 3102 130 58 9 chr3_random 6056224 6056761 -2371520 + MER34B LTR ERV1 2 564 -1 405 217 84 25 chr3_random 6056795 6057007 -2371274 - LTR48 LTR ERV1 0 737 325 241 224 105 0 chr3_random 6057005 6057081 -2371200 - LTR48 LTR ERV1 -301 486 403 * 5397 165 9 7 chr3_random 6057086 6058443 -2369838 + L1PA16 LINE L1 4808 6166 0 887 211 65 0 chr3_random 6058502 6058701 -2369580 - MER34C LTR ERV1 -373 212 1 4169 143 41 27 chr3_random 6058909 6059156 -2369125 - L1PB4 LINE L1 0 6156 5914 1550 201 0 34 chr3_random 6059156 6059479 -2368802 - AluJo SINE Alu 0 312 1 4169 143 41 27 chr3_random 6059479 6059615 -2368666 - L1PB4 LINE L1 -242 5914 5781 453 19 0 0 chr3_random 6059615 6059669 -2368612 + (TAGA)n Simple_repeat Simple_repeat 4 57 0 4169 143 41 27 chr3_random 6059669 6060065 -2368216 - L1PB4 LINE L1 -375 5781 5365 382 284 168 11 chr3_random 6060599 6060789 -2367492 - MLT1E3 LTR MaLR -104 520 301 316 158 70 0 chr3_random 6060809 6060866 -2367415 - AluSc SINE Alu -95 204 144 1122 156 6 0 chr3_random 6060866 6061046 -2367235 - MER46B DNA MER2_type -180 56 1 295 183 50 0 chr3_random 6061046 6061106 -2367175 + MIR SINE MIR 156 218 -44 229 320 0 29 chr3_random 6061621 6061724 -2366557 + MLT1J LTR MaLR 273 372 -139 354 330 75 29 chr3_random 6063616 6063855 -2364426 + HERVL LTR ERVL 4281 4530 -1124 346 182 0 23 chr3_random 6065576 6065664 -2362617 + GA-rich Low_complexity Low_complexity 3 88 0 6469 222 30 18 chr3_random 6065931 6067344 -2360937 + L1MA1 LINE L1 17 1447 -6118 3608 187 40 34 chr3_random 6067378 6068794 -2359487 + L1MA1 LINE L1 3089 4514 -3051 385 171 53 0 chr3_random 6068796 6068872 -2359409 - L1M1 LINE L1 -6128 1437 1358 5604 68 1 0 chr3_random 6068872 6069588 -2358693 + L1PA8 LINE L1 5448 6164 -8 269 241 44 36 chr3_random 6069604 6069741 -2358540 + L1ME LINE L1 5665 5802 -319 6704 138 21 18 chr3_random 6070016 6071034 -2357247 + L1MA1 LINE L1 6042 7073 -648 189 0 0 0 chr3_random 6071034 6071055 -2357226 + (CA)n Simple_repeat Simple_repeat 2 22 0 6704 138 21 18 chr3_random 6071055 6071707 -2356574 + L1MA1 LINE L1 7073 7721 0 190 274 153 32 chr3_random 6072249 6072439 -2355842 - L2 LINE L2 -744 2570 2358 664 345 82 23 chr3_random 6072741 6073179 -2355102 - MLT1J LTR MaLR -32 479 16 26 0 0 0 chr3_random 6075173 6075199 -2353082 + AT_rich Low_complexity Low_complexity 1 26 0 1264 123 44 5 chr3_random 6075280 6075483 -2352798 - L1PA15 LINE L1 -7 6158 5948 646 93 0 21 chr3_random 6075491 6075588 -2352693 + L1PA5 LINE L1 6060 6154 0 31 0 0 0 chr3_random 6075719 6075750 -2352531 + AT_rich Low_complexity Low_complexity 1 31 0 613 265 140 10 chr3_random 6076378 6076578 -2351703 + MIR SINE MIR 31 256 -6 247 113 38 0 chr3_random 6076901 6076954 -2351327 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 265 279 0 0 chr3_random 6077287 6077348 -2350933 + CT-rich Low_complexity Low_complexity 4 64 0 2844 218 83 12 chr3_random 6078975 6079055 -2349226 - MER63C DNA MER1_type -158 902 829 2050 127 0 10 chr3_random 6079055 6079363 -2348918 + AluSc SINE Alu 2 306 -3 2844 218 83 12 chr3_random 6079363 6080085 -2348196 - MER63C DNA MER1_type -231 829 43 214 380 18 18 chr3_random 6080323 6080436 -2347845 + L2 LINE L2 3117 3229 -43 1481 198 6 28 chr3_random 6082591 6082909 -2345372 - AluJo SINE Alu -1 311 1 252 86 0 0 chr3_random 6083227 6083262 -2345019 + (CA)n Simple_repeat Simple_repeat 2 36 0 694 231 12 169 chr3_random 6084311 6084726 -2343555 + L1MD3 LINE L1 5582 5790 -569 632 262 21 37 chr3_random 6085339 6085530 -2342751 + L1ME1 LINE L1 5955 6142 -24 1873 94 0 99 chr3_random 6085732 6086074 -2342207 + AluSc SINE Alu 1 308 -1 414 185 22 11 chr3_random 6086106 6086198 -2342083 - MER4E LTR ERV1 0 779 687 1768 125 43 36 chr3_random 6086304 6086608 -2341673 - MER4B LTR ERV1 -302 308 3 747 87 0 0 chr3_random 6086709 6086813 -2341468 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 249 33 0 0 chr3_random 6087817 6087847 -2340434 + (A)n Simple_repeat Simple_repeat 1 30 0 194 323 15 0 chr3_random 6088058 6088123 -2340158 - MIR SINE MIR 0 262 197 1771 202 98 33 chr3_random 6088358 6088818 -2339463 + LTR2B LTR ERV1 1 490 0 8736 81 2 40 chr3_random 6088818 6090110 -2338171 + Harlequin LTR ERV1 1 1243 -5653 33374 77 6 12 chr3_random 6090210 6090684 -2337597 + Harlequin LTR ERV1 2518 2993 -3903 2306 92 13 0 chr3_random 6090684 6090988 -2337293 - AluY SINE Alu -3 308 1 33374 77 6 12 chr3_random 6090988 6094918 -2333363 + Harlequin LTR ERV1 2993 6896 0 1669 154 169 37 chr3_random 6094940 6095125 -2333156 + LTR2B LTR ERV1 35 194 -296 186 43 0 0 chr3_random 6095125 6095148 -2333133 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1669 154 169 37 chr3_random 6095148 6095365 -2332916 + LTR2B LTR ERV1 194 490 0 363 44 0 0 chr3_random 6095402 6095447 -2332834 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 2061 159 32 8 chr3_random 6096653 6097024 -2331257 + L1MB2 LINE L1 5784 6163 -8 21 0 0 0 chr3_random 6098253 6098274 -2330007 + AT_rich Low_complexity Low_complexity 1 21 0 847 300 20 16 chr3_random 6098678 6098931 -2329350 + MIR SINE MIR 7 260 -2 228 224 0 0 chr3_random 6098968 6099035 -2329246 + GA-rich Low_complexity Low_complexity 2 68 0 228 257 0 0 chr3_random 6099337 6099407 -2328874 + (TA)n Simple_repeat Simple_repeat 1 70 0 428 239 55 18 chr3_random 6099922 6100031 -2328250 + MIR3 SINE MIR 76 188 -20 31 44 0 0 chr3_random 6100576 6100621 -2327660 + AT_rich Low_complexity Low_complexity 1 45 0 241 305 84 53 chr3_random 6102061 6102192 -2326089 + MIR SINE MIR 13 147 -115 873 211 22 11 chr3_random 6102396 6102576 -2325705 + MER58A DNA MER1_type 3 184 -40 416 235 10 10 chr3_random 6102879 6102981 -2325300 + MER5A DNA MER1_type 4 105 -84 1334 204 0 27 chr3_random 6104734 6105028 -2323253 - AluJo SINE Alu -12 300 15 615 314 94 19 chr3_random 6107352 6107661 -2320620 - MLT1J LTR MaLR -173 338 7 180 167 0 0 chr3_random 6107661 6107709 -2320572 + CT-rich Low_complexity Low_complexity 2 49 0 225 0 0 0 chr3_random 6107710 6107735 -2320546 + (TG)n Simple_repeat Simple_repeat 2 26 0 464 243 9 0 chr3_random 6107778 6107889 -2320392 - MER81 DNA DNA -2 112 1 24 53 0 0 chr3_random 6107889 6107927 -2320354 + AT_rich Low_complexity Low_complexity 1 38 0 240 35 0 0 chr3_random 6108698 6108727 -2319554 + (A)n Simple_repeat Simple_repeat 1 29 0 2084 213 51 30 chr3_random 6109935 6110462 -2317819 + MER74A LTR ERVL 8 545 -13 190 427 54 4 chr3_random 6111041 6111280 -2317001 - L2 LINE L2 -470 2844 2594 259 218 58 13 chr3_random 6112461 6112617 -2315664 + (TA)n Simple_repeat Simple_repeat 1 163 0 22 35 0 0 chr3_random 6113163 6113192 -2315089 + AT_rich Low_complexity Low_complexity 1 29 0 2271 97 0 7 chr3_random 6113284 6113583 -2314698 + AluSg SINE Alu 1 297 -13 743 253 102 62 chr3_random 6113678 6114180 -2314101 - L1MC4a LINE L1 -1543 6265 5744 1249 162 5 0 chr3_random 6114545 6114749 -2313532 - L1P LINE L1 -2236 3910 3706 4315 220 72 33 chr3_random 6114768 6116049 -2312232 - L1P LINE L1 -2947 3199 1869 1070 79 0 0 chr3_random 6116050 6116177 -2312104 - AluY SINE Alu -184 127 1 2506 255 38 33 chr3_random 6116178 6117266 -2311015 + L1ME1 LINE L1 5055 6148 -18 1523 152 46 0 chr3_random 6118275 6118558 -2309723 + L1MA3 LINE L1 6010 6305 0 22 0 0 0 chr3_random 6118621 6118643 -2309638 + AT_rich Low_complexity Low_complexity 1 22 0 730 297 140 32 chr3_random 6118998 6119534 -2308747 + MLT1G1 LTR MaLR 1 594 -1 392 161 0 11 chr3_random 6120313 6120400 -2307881 + GA-rich Low_complexity Low_complexity 4 89 0 2192 114 0 3 chr3_random 6120808 6121107 -2307174 - AluSg SINE Alu -12 298 1 263 263 0 0 chr3_random 6121597 6121654 -2306627 + L2 LINE L2 2213 2269 -1045 1329 163 128 38 chr3_random 6121666 6122010 -2306271 + THE1C LTR MaLR 1 375 0 9630 127 10 50 chr3_random 6122013 6123656 -2304625 + THE1C-int LTR MaLR 4 1580 0 1661 152 65 46 chr3_random 6123656 6124024 -2304257 + THE1C LTR MaLR 1 375 0 208 400 96 15 chr3_random 6124717 6124852 -2303429 + L2 LINE L2 3127 3272 0 277 359 117 39 chr3_random 6125695 6125951 -2302330 + L2 LINE L2 2981 3256 -16 283 220 128 28 chr3_random 6126154 6126295 -2301986 + L1ME LINE L1 5513 5667 -454 1267 212 14 35 chr3_random 6126368 6126656 -2301625 + AluJb SINE Alu 31 312 0 626 255 14 56 chr3_random 6126732 6126948 -2301333 + MIR SINE MIR 41 247 -15 2111 151 0 7 chr3_random 6127685 6127989 -2300292 - AluSx SINE Alu -10 302 1 853 123 34 0 chr3_random 6129201 6129347 -2298934 + THE1C LTR MaLR 192 342 -33 281 276 110 28 chr3_random 6129771 6129916 -2298365 - MER5A DNA MER1_type 0 189 33 494 208 173 12 chr3_random 6129946 6130114 -2298167 - MER76 LTR ERV -151 537 343 1251 235 7 4 chr3_random 6130142 6130419 -2297862 - MER76 LTR ERV -409 279 2 180 152 0 0 chr3_random 6131114 6131147 -2297134 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 0 0 0 chr3_random 6131192 6131215 -2297066 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3_random 6131494 6131519 -2296762 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3_random 6131539 6131564 -2296717 + AT_rich Low_complexity Low_complexity 1 25 0 270 0 0 0 chr3_random 6131604 6131634 -2296647 + (TG)n Simple_repeat Simple_repeat 2 31 0 37 0 0 0 chr3_random 6131634 6131671 -2296610 + AT_rich Low_complexity Low_complexity 1 37 0 1571 258 25 100 chr3_random 6131841 6132730 -2295551 + L2 LINE L2 2474 3290 -23 300 27 0 0 chr3_random 6135095 6135132 -2293149 + (CA)n Simple_repeat Simple_repeat 2 38 0 270 333 108 22 chr3_random 6135194 6135425 -2292856 - L2 LINE L2 -218 3054 2804 292 371 9 9 chr3_random 6135711 6135816 -2292465 - MIR SINE MIR -85 123 19 318 338 83 8 chr3_random 6136762 6136895 -2291386 - L2 LINE L2 -26 3246 3104 214 384 8 32 chr3_random 6137739 6137864 -2290417 + MIR3 SINE MIR 66 187 -21 532 256 83 0 chr3_random 6139287 6139420 -2288861 - MIR SINE MIR -87 175 32 217 309 100 45 chr3_random 6139456 6139566 -2288715 - L2 LINE L2 -1 3271 3156 763 256 60 103 chr3_random 6140060 6140506 -2287775 - LTR40c LTR ERVL -37 428 2 303 243 139 56 chr3_random 6140882 6141026 -2287255 + MIR SINE MIR 61 216 -46 576 266 62 0 chr3_random 6141807 6141984 -2286297 + MER5A DNA MER1_type 1 188 -1 339 92 355 0 chr3_random 6142330 6142406 -2285875 + MLT1A2 LTR MaLR 1 103 -271 21 82 0 0 chr3_random 6142428 6142477 -2285804 + AT_rich Low_complexity Low_complexity 1 49 0 1828 140 70 20 chr3_random 6142918 6143275 -2285006 - THE1C LTR MaLR 0 375 1 909 211 15 5 chr3_random 6143523 6143722 -2284559 - Tigger7 DNA MER2_type -530 203 3 464 231 129 65 chr3_random 6143791 6143879 -2284402 - MIR SINE MIR -63 199 118 2011 127 30 0 chr3_random 6143879 6144179 -2284102 + AluSx SINE Alu 1 309 -3 464 231 129 65 chr3_random 6144179 6144276 -2284005 - MIR SINE MIR -144 118 2 2570 55 3 3 chr3_random 6144561 6144871 -2283410 + AluSp SINE Alu 1 310 -3 341 179 77 17 chr3_random 6145303 6145420 -2282861 - L1MC5 LINE L1 -229 7732 7609 1119 185 22 83 chr3_random 6145523 6145836 -2282445 - L1ME1 LINE L1 -6 6160 5867 1781 150 10 49 chr3_random 6145886 6146193 -2282088 - AluJo SINE Alu -17 295 1 28 0 0 0 chr3_random 6146202 6146230 -2282051 + AT_rich Low_complexity Low_complexity 1 28 0 1630 163 7 34 chr3_random 6146234 6146528 -2281753 - AluJo SINE Alu -26 286 1 1261 208 23 11 chr3_random 6146550 6146815 -2281466 + AluSx SINE Alu 1 268 -44 32 81 0 0 chr3_random 6147772 6147846 -2280435 + AT_rich Low_complexity Low_complexity 1 74 0 1789 167 10 3 chr3_random 6147918 6148212 -2280069 - AluJo SINE Alu -16 296 1 2026 115 3 11 chr3_random 6148311 6148628 -2279653 - AluSx SINE Alu 0 315 1 2053 136 3 0 chr3_random 6148635 6148921 -2279360 - AluSx SINE Alu -25 287 1 31 68 0 0 chr3_random 6149004 6149063 -2279218 + AT_rich Low_complexity Low_complexity 1 59 0 26 74 0 0 chr3_random 6149461 6149515 -2278766 + AT_rich Low_complexity Low_complexity 1 54 0 984 49 25 0 chr3_random 6149770 6149892 -2278389 + AluSg SINE Alu 1 125 -185 1197 83 0 0 chr3_random 6149994 6150139 -2278142 - AluSx SINE Alu -151 161 17 525 244 35 0 chr3_random 6150184 6150299 -2277982 + MIR SINE MIR 21 139 -123 650 192 45 58 chr3_random 6150400 6150624 -2277657 + MER106A DNA MER1_type 16 236 0 640 106 58 10 chr3_random 6150774 6150878 -2277403 - HY1 scRNA scRNA -3 109 1 30 45 0 0 chr3_random 6151662 6151706 -2276575 + AT_rich Low_complexity Low_complexity 1 44 0 2230 107 3 13 chr3_random 6151720 6152019 -2276262 - AluSq SINE Alu -17 296 1 813 205 9 79 chr3_random 6152142 6152371 -2275910 - AluJb SINE Alu -16 296 84 202 189 0 0 chr3_random 6153197 6153234 -2275047 + (CGGGG)n Simple_repeat Simple_repeat 1 37 0 250 227 53 13 chr3_random 6153989 6154064 -2274217 - MIR SINE MIR -7 255 178 564 172 8 94 chr3_random 6154927 6155055 -2273226 - FLAM_A SINE Alu -16 117 1 1015 219 60 63 chr3_random 6155474 6155840 -2272441 + MLT1A1 LTR MaLR 1 365 0 2357 74 6 10 chr3_random 6155883 6156195 -2272086 - AluY SINE Alu 0 311 1 267 247 191 0 chr3_random 6156222 6156311 -2271970 + HAL1 LINE L1 808 913 -1594 1718 189 70 11 chr3_random 6156532 6156903 -2271378 - MLT1D LTR MaLR -112 393 1 303 28 0 0 chr3_random 6157267 6157303 -2270978 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1667 110 84 4 chr3_random 6157303 6157459 -2270822 - AluSx SINE Alu -25 287 100 180 0 0 0 chr3_random 6157459 6157479 -2270802 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1667 110 84 4 chr3_random 6157479 6157585 -2270696 - AluSx SINE Alu -212 100 4 1026 136 12 19 chr3_random 6157615 6157777 -2270504 + FRAM SINE Alu 1 161 -5 2495 50 3 0 chr3_random 6158331 6158634 -2269647 + AluY SINE Alu 1 304 -7 467 203 11 90 chr3_random 6158897 6159074 -2269207 - HAL1b LINE L1 -438 910 748 590 136 178 0 chr3_random 6159280 6159398 -2268883 + AluSg/x SINE Alu 158 296 -16 2318 58 10 10 chr3_random 6159399 6159694 -2268587 + AluY SINE Alu 2 296 -15 2244 107 0 0 chr3_random 6159696 6159994 -2268287 + AluSx SINE Alu 1 298 -14 1059 171 149 9 chr3_random 6160415 6160637 -2267644 - AluJo SINE Alu -20 292 40 1967 137 7 7 chr3_random 6160674 6160973 -2267308 - AluSg SINE Alu -11 299 1 432 319 66 66 chr3_random 6160994 6161235 -2267046 + L2 LINE L2 2995 3235 -37 1387 132 27 18 chr3_random 6161589 6161808 -2266473 + AluJo SINE Alu 79 299 -13 527 307 101 17 chr3_random 6161935 6162173 -2266108 + MIR SINE MIR 3 260 -2 209 296 183 9 chr3_random 6162189 6162304 -2265977 + L2 LINE L2 3179 3313 0 1405 76 25 10 chr3_random 6162321 6162518 -2265763 + AluSg/x SINE Alu 102 301 -9 189 268 54 0 chr3_random 6163156 6163212 -2265069 - MIR SINE MIR -69 139 81 21 82 0 0 chr3_random 6163571 6163620 -2264661 + AT_rich Low_complexity Low_complexity 1 49 0 508 371 37 32 chr3_random 6163656 6164066 -2264215 + L1M3a LINE L1 11 422 -5533 1870 173 30 93 chr3_random 6165236 6165603 -2262678 + L1 LINE L1 2850 3158 -2988 1809 149 14 4 chr3_random 6165603 6165879 -2262402 - AluSx SINE Alu -30 282 4 1870 173 30 93 chr3_random 6165879 6166176 -2262105 + L1 LINE L1 3158 3472 -2674 1405 126 40 43 chr3_random 6166276 6166475 -2261806 - MER44D DNA MER2_type -1944 547 349 2290 105 7 0 chr3_random 6166475 6166771 -2261510 - AluSx SINE Alu -14 298 1 1405 126 40 43 chr3_random 6166771 6166849 -2261432 - MER44D DNA MER2_type -2142 349 1 297 75 0 0 chr3_random 6167186 6167226 -2261055 + (A)n Simple_repeat Simple_repeat 1 40 0 190 179 26 0 chr3_random 6167718 6167757 -2260524 - MIR3 SINE MIR -5 203 164 33 43 0 0 chr3_random 6168545 6168592 -2259689 + AT_rich Low_complexity Low_complexity 1 47 0 2051 104 4 0 chr3_random 6168600 6168870 -2259411 - AluSx SINE Alu -39 273 3 27 29 0 0 chr3_random 6168875 6168909 -2259372 + AT_rich Low_complexity Low_complexity 1 34 0 1189 139 0 0 chr3_random 6168930 6169096 -2259185 - AluSg/x SINE Alu -13 299 134 2427 78 3 0 chr3_random 6169601 6169909 -2258372 + AluY SINE Alu 1 309 -2 502 171 36 0 chr3_random 6170087 6170198 -2258083 + L1M4 LINE L1 2578 2692 -3454 399 277 228 11 chr3_random 6170326 6170510 -2257771 - MIR SINE MIR -37 225 2 2335 92 7 0 chr3_random 6170853 6171157 -2257124 + AluSx SINE Alu 1 306 -6 247 274 24 12 chr3_random 6171526 6171610 -2256671 + LTR40c LTR ERVL 1 85 -380 1521 208 208 10 chr3_random 6171611 6172069 -2256212 - MLT1F1 LTR MaLR -8 559 1 1324 228 54 56 chr3_random 6172069 6172458 -2255823 + LTR40c LTR ERVL 78 465 0 633 211 96 6 chr3_random 6172559 6172715 -2255566 - MIR SINE MIR -30 232 63 2265 95 0 13 chr3_random 6172747 6172879 -2255402 + AluSx SINE Alu 5 137 -175 2365 59 7 13 chr3_random 6172879 6173182 -2255099 + AluSc SINE Alu 1 301 -8 2265 95 0 13 chr3_random 6173182 6173353 -2254928 + AluSx SINE Alu 137 304 -8 189 0 0 0 chr3_random 6173560 6173581 -2254700 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2101 114 10 0 chr3_random 6173735 6174032 -2254249 - AluSx SINE Alu -11 301 2 2116 118 0 34 chr3_random 6174044 6174367 -2253914 - AluSq SINE Alu -1 312 1 2120 119 10 0 chr3_random 6175728 6176023 -2252258 + AluSg SINE Alu 1 298 -12 1994 131 0 34 chr3_random 6176341 6176661 -2251620 - AluJo SINE Alu -3 309 1 2146 120 0 23 chr3_random 6176900 6177209 -2251072 - AluJb SINE Alu -10 302 1 635 146 85 8 chr3_random 6177252 6177382 -2250899 - Charlie1 DNA MER1_type 0 2761 2622 21 0 0 0 chr3_random 6177382 6177403 -2250878 + AT_rich Low_complexity Low_complexity 1 21 0 2195 120 0 0 chr3_random 6177403 6177695 -2250586 + AluSx SINE Alu 1 292 -20 361 125 0 28 chr3_random 6177698 6177770 -2250511 + (TA)n Simple_repeat Simple_repeat 1 70 0 280 0 0 28 chr3_random 6177770 6177806 -2250475 + (CA)n Simple_repeat Simple_repeat 1 35 0 1071 186 111 83 chr3_random 6177806 6177842 -2250439 - Charlie1 DNA MER1_type -171 2590 2556 2316 97 0 0 chr3_random 6177842 6178140 -2250141 + AluSx SINE Alu 1 298 -14 1071 186 111 83 chr3_random 6178140 6178463 -2249818 - Charlie1 DNA MER1_type -205 2556 2221 756 165 0 0 chr3_random 6178463 6178578 -2249703 - FLAM_A SINE Alu -20 122 8 416 206 20 29 chr3_random 6178635 6178737 -2249544 - MLT1B LTR MaLR 0 390 290 2263 89 3 40 chr3_random 6178836 6179160 -2249121 - AluSx SINE Alu 0 312 1 1529 109 0 5 chr3_random 6179209 6179419 -2248862 - AluSc SINE Alu -19 290 82 288 0 0 0 chr3_random 6179420 6179452 -2248829 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 926 99 0 4 chr3_random 6179452 6179655 -2248626 - AluY SINE Alu -31 280 1 311 193 72 24 chr3_random 6179655 6179738 -2248543 - MLT1B LTR MaLR -309 196 110 1482 198 9 9 chr3_random 6179770 6180093 -2248188 - Charlie1 DNA MER1_type -578 2183 1861 2445 83 0 0 chr3_random 6180101 6180403 -2247878 - AluY SINE Alu -9 302 1 1030 215 75 49 chr3_random 6180548 6180835 -2247446 + L1MB1 LINE L1 1018 1317 -4574 2130 130 32 16 chr3_random 6180835 6181204 -2247077 - THE1C LTR MaLR 0 375 1 1030 215 75 49 chr3_random 6181204 6181265 -2247016 + L1MB1 LINE L1 1317 1375 -4516 1846 249 31 18 chr3_random 6181270 6181821 -2246460 - L1 LINE L1 -3200 2946 2389 * 1939 242 72 36 chr3_random 6181820 6182876 -2245405 + L1ME3 LINE L1 1648 2712 -3828 1227 222 49 6 chr3_random 6182892 6183221 -2245060 + L1MB1 LINE L1 4250 4592 -1378 928 214 40 0 chr3_random 6183445 6183646 -2244635 - MER6B DNA MER2_type 0 210 2 191 229 0 0 chr3_random 6185401 6185436 -2242845 + MIR SINE MIR 217 251 -11 24 0 0 0 chr3_random 6185437 6185461 -2242820 + AT_rich Low_complexity Low_complexity 1 24 0 23 78 0 0 chr3_random 6186692 6186743 -2241538 + AT_rich Low_complexity Low_complexity 1 51 0 345 227 76 34 chr3_random 6187193 6187312 -2240969 + L2 LINE L2 2533 2656 -658 240 100 0 0 chr3_random 6187476 6187516 -2240765 + (CA)n Simple_repeat Simple_repeat 1 40 0 501 294 135 40 chr3_random 6187525 6187821 -2240460 + L2 LINE L2 2985 3308 -5 13399 149 19 45 chr3_random 6188459 6190942 -2237339 + Tigger1 DNA MER2_type 1 2418 0 41 66 0 0 chr3_random 6192074 6192150 -2236131 + AT_rich Low_complexity Low_complexity 1 76 0 623 315 80 4 chr3_random 6192185 6192423 -2235858 + MIR SINE MIR 1 256 -6 22 80 0 0 chr3_random 6192440 6192490 -2235791 + AT_rich Low_complexity Low_complexity 1 50 0 230 177 51 25 chr3_random 6192530 6192609 -2235672 + T-rich Low_complexity Low_complexity 2 82 0 846 305 113 67 chr3_random 6192814 6194002 -2234279 + L1ME3 LINE L1 4498 5739 -801 5296 208 29 14 chr3_random 6194014 6195507 -2232774 + L1P4 LINE L1 3984 5489 -677 4051 198 61 9 chr3_random 6195608 6196703 -2231578 + L1MB1 LINE L1 4831 5990 -2 441 240 110 71 chr3_random 6196705 6196822 -2231459 + L1ME3 LINE L1 6205 6316 -242 1560 184 7 28 chr3_random 6196822 6197110 -2231171 + AluJo SINE Alu 1 282 -30 441 240 110 71 chr3_random 6197110 6197300 -2230981 + L1ME3 LINE L1 6316 6538 -20 2118 96 7 0 chr3_random 6199221 6199542 -2228739 + AluSp SINE Alu 1 323 0 1611 49 10 15 chr3_random 6200061 6200265 -2228016 - AluY SINE Alu -108 203 1 840 201 0 48 chr3_random 6200265 6200484 -2227797 - AluJb SINE Alu -18 294 85 234 0 0 0 chr3_random 6202167 6202193 -2226088 + (TA)n Simple_repeat Simple_repeat 1 26 0 2205 97 7 10 chr3_random 6202542 6202841 -2225440 + AluSx SINE Alu 1 298 -14 2445 70 0 19 chr3_random 6203687 6204000 -2224281 - AluSp SINE Alu -4 309 3 276 182 162 0 chr3_random 6204268 6204367 -2223914 + AluJb SINE Alu 22 136 -166 3285 170 75 48 chr3_random 6204375 6204739 -2223542 + L1 LINE L1 4318 4671 -1475 219 36 0 0 chr3_random 6204739 6204767 -2223514 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3285 170 75 48 chr3_random 6204767 6205113 -2223168 + L1 LINE L1 4671 5059 -1087 2023 100 27 30 chr3_random 6205113 6205413 -2222868 + AluSq SINE Alu 1 299 -14 3285 170 75 48 chr3_random 6205413 6205591 -2222690 + L1 LINE L1 5059 5231 -915 440 230 48 40 chr3_random 6205735 6205861 -2222420 + MIR SINE MIR 120 246 -16 2203 109 0 7 chr3_random 6206314 6206617 -2221664 - AluSx SINE Alu -11 301 1 195 69 0 0 chr3_random 6206646 6206675 -2221606 + (A)n Simple_repeat Simple_repeat 1 29 0 2114 105 21 0 chr3_random 6206963 6207249 -2221032 - AluSx SINE Alu -20 292 1 437 330 89 55 chr3_random 6207340 6207488 -2220793 + L2 LINE L2 2133 2274 -1040 1443 168 41 19 chr3_random 6207488 6207804 -2220477 + MER33 DNA MER1_type 2 324 0 437 330 89 55 chr3_random 6207804 6208091 -2220190 + L2 LINE L2 2274 2583 -731 282 310 14 0 chr3_random 6208271 6208342 -2219939 - MIR SINE MIR -143 119 48 2071 123 7 0 chr3_random 6208926 6209218 -2219063 + AluSq SINE Alu 1 294 -19 2168 110 0 13 chr3_random 6209459 6209767 -2218514 + AluSq SINE Alu 3 306 -7 274 98 0 59 chr3_random 6209911 6209962 -2218319 + Alu SINE Alu 251 298 -4 405 0 0 0 chr3_random 6209991 6210036 -2218245 + (TG)n Simple_repeat Simple_repeat 2 46 0 567 208 0 0 chr3_random 6211012 6211108 -2217173 - AluS SINE Alu -215 98 3 353 180 208 45 chr3_random 6211830 6212008 -2216273 - L2 LINE L2 0 3313 3107 669 135 0 10 chr3_random 6212010 6212114 -2216167 + AluSq/x SINE Alu 4 106 -206 214 321 98 10 chr3_random 6212339 6212574 -2215707 + L2 LINE L2 2551 2850 -464 291 318 61 98 chr3_random 6212623 6212919 -2215362 + L2 LINE L2 2988 3272 0 1348 117 5 0 chr3_random 6212924 6213120 -2215161 - MER107 DNA MER1_type 0 197 1 22 35 0 0 chr3_random 6214294 6214323 -2213958 + AT_rich Low_complexity Low_complexity 1 29 0 3272 203 70 2 chr3_random 6214542 6215336 -2212945 + L1 LINE L1 3654 4501 -1645 2252 223 40 7 chr3_random 6215331 6215924 -2212357 + L1 LINE L1 4736 5348 -798 * 1480 235 28 14 chr3_random 6215924 6216431 -2211850 + MER52A LTR ERV1 1 651 -688 2131 98 11 0 chr3_random 6216813 6217098 -2211183 + AluSp SINE Alu 1 288 -25 195 69 0 0 chr3_random 6217104 6217133 -2211148 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 691 226 7 7 chr3_random 6217382 6217519 -2210762 + AluJb SINE Alu 133 269 -43 842 156 0 15 chr3_random 6217625 6217760 -2210521 - AluSg/x SINE Alu -46 266 134 954 68 0 0 chr3_random 6217928 6218045 -2210236 + AluSg1 SINE Alu 1 117 -192 384 117 0 0 chr3_random 6218045 6218105 -2210176 + Alu SINE Alu 241 300 -2 288 183 108 54 chr3_random 6218130 6218223 -2210058 - L1ME LINE L1 -393 5769 5672 357 24 0 0 chr3_random 6218628 6218670 -2209611 + (TG)n Simple_repeat Simple_repeat 2 43 0 501 155 0 0 chr3_random 6219242 6219326 -2208955 + FRAM SINE Alu 69 152 -24 720 196 0 0 chr3_random 6219337 6219470 -2208811 + AluJo SINE Alu 1 133 -169 1600 102 157 4 chr3_random 6219473 6219728 -2208553 + AluSx SINE Alu 1 294 -8 934 179 25 0 chr3_random 6219740 6219902 -2208379 + AluJo SINE Alu 137 302 0 1364 93 44 0 chr3_random 6219906 6220131 -2208150 + L1MA1 LINE L1 6068 6302 0 1125 196 61 32 chr3_random 6220154 6220362 -2207919 - L1ME LINE L1 -589 5577 5356 344 22 22 0 chr3_random 6220362 6220407 -2207874 + (TG)n Simple_repeat Simple_repeat 2 47 0 1125 196 61 32 chr3_random 6220407 6220509 -2207772 - L1ME LINE L1 -810 5356 5258 186 221 253 42 chr3_random 6220666 6220761 -2207520 + L2 LINE L2 3157 3271 -1 22 0 0 0 chr3_random 6222559 6222581 -2205700 + AT_rich Low_complexity Low_complexity 1 22 0 1884 139 18 0 chr3_random 6223159 6223440 -2204841 - AluJo SINE Alu -16 296 11 1665 152 104 45 chr3_random 6223526 6223900 -2204381 + MSTD LTR MaLR 1 396 0 1724 159 48 11 chr3_random 6224033 6224386 -2203895 - L1MB7 LINE L1 -5 6179 5814 913 153 0 0 chr3_random 6224533 6224664 -2203617 + FLAM_C SINE Alu 1 131 -2 190 343 74 82 chr3_random 6224745 6224908 -2203373 + L2 LINE L2 2104 2267 -1047 2059 128 10 3 chr3_random 6224908 6225212 -2203069 - AluSx SINE Alu -6 306 1 190 343 74 82 chr3_random 6225212 6225818 -2202463 + L2 LINE L2 2267 2867 -447 1280 161 0 15 chr3_random 6226011 6226216 -2202065 - AluSx SINE Alu -100 212 11 1093 179 18 54 chr3_random 6226459 6226682 -2201599 - AluJb SINE Alu -4 308 94 1757 173 0 11 chr3_random 6226781 6227065 -2201216 + AluJb SINE Alu 3 283 -29 872 152 0 15 chr3_random 6227111 6227243 -2201038 + FRAM SINE Alu 29 158 -18 1712 149 17 7 chr3_random 6227525 6227813 -2200468 - AluSc SINE Alu -14 295 5 206 307 148 0 chr3_random 6227995 6228096 -2200185 - L3b LINE CR1 -366 1217 1102 1848 127 0 0 chr3_random 6228166 6228419 -2199862 - AluSq SINE Alu -60 253 1 2831 13 0 0 chr3_random 6228430 6228740 -2199541 - AluYb8 SINE Alu -8 310 1 228 111 0 0 chr3_random 6229732 6229768 -2198513 + (CCG)n Simple_repeat Simple_repeat 2 37 0 2318 98 3 3 chr3_random 6231473 6231778 -2196503 - AluSp SINE Alu -8 305 1 773 93 8 8 chr3_random 6231792 6231910 -2196371 - AluSg/x SINE Alu -2 307 190 233 284 81 0 chr3_random 6233154 6233228 -2195053 + L2 LINE L2 2892 2971 -342 379 241 96 96 chr3_random 6233285 6233472 -2194809 + L2 LINE L2 3092 3278 -35 376 181 173 8 chr3_random 6234162 6234295 -2193986 - L1ME4a LINE L1 -5 6116 5962 1540 128 20 8 chr3_random 6234411 6234661 -2193620 - AluSx SINE Alu -17 295 43 2195 106 7 7 chr3_random 6235512 6235815 -2192466 - AluSp SINE Alu -9 304 2 813 145 7 43 chr3_random 6236752 6236890 -2191391 - FLAM_C SINE Alu -10 133 1 225 0 0 0 chr3_random 6237300 6237325 -2190956 + (T)n Simple_repeat Simple_repeat 1 25 0 35 63 0 0 chr3_random 6239145 6239208 -2189073 + AT_rich Low_complexity Low_complexity 1 63 0 1946 151 3 0 chr3_random 6239454 6239752 -2188529 - AluJo SINE Alu -13 299 1 6090 36 3 1 chr3_random 6239976 6240717 -2187564 - L1P LINE L1 -1627 4519 3778 316 248 99 0 chr3_random 6240750 6240851 -2187430 - L1ME LINE L1 -436 5685 5575 742 153 196 18 chr3_random 6241570 6241733 -2186548 - MER3 DNA MER1_type -1 208 17 4265 124 36 62 chr3_random 6242075 6242932 -2185349 - L1MA5 LINE L1 -2 6298 5464 334 313 80 17 chr3_random 6243081 6243257 -2185024 - MIR3 SINE MIR -21 187 1 27 0 0 0 chr3_random 6244614 6244641 -2183640 + AT_rich Low_complexity Low_complexity 1 27 0 308 203 62 0 chr3_random 6244760 6244824 -2183457 + MER20 DNA MER1_type 18 85 -134 373 148 4 0 chr3_random 6244938 6245013 -2183268 - Alu SINE Alu -248 53 2 1335 157 58 74 chr3_random 6245036 6245348 -2182933 - AluJo SINE Alu -5 307 1 711 93 0 0 chr3_random 6245542 6245639 -2182642 - AluSg/x SINE Alu -18 292 196 2194 109 0 3 chr3_random 6245653 6245946 -2182335 - AluSg SINE Alu -18 292 1 252 254 97 9 chr3_random 6245958 6246072 -2182209 - L1ME4a LINE L1 -303 5818 5695 2180 102 6 32 chr3_random 6246148 6246462 -2181819 - AluSx SINE Alu -6 306 1 30 45 0 0 chr3_random 6247317 6247361 -2180920 + AT_rich Low_complexity Low_complexity 1 44 0 595 338 39 4 chr3_random 6247366 6247597 -2180684 - MIR SINE MIR -12 250 12 366 371 17 17 chr3_random 6248178 6248356 -2179925 - MER5B DNA MER1_type 0 178 1 864 227 31 36 chr3_random 6248407 6248632 -2179649 + MER58A DNA MER1_type 1 224 0 552 233 0 39 chr3_random 6248689 6248818 -2179463 + MER63 DNA MER1_type 2 751 -311 798 244 84 0 chr3_random 6248851 6249113 -2179168 - L1ME2 LINE L1 -294 5870 5587 27 49 0 0 chr3_random 6249195 6249236 -2179045 + AT_rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr3_random 6249276 6249315 -2178966 + AT_rich Low_complexity Low_complexity 1 39 0 1763 154 3 53 chr3_random 6249892 6250211 -2178070 + AluSx SINE Alu 1 303 -9 21 57 0 0 chr3_random 6250271 6250306 -2177975 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3_random 6250469 6250490 -2177791 + AT_rich Low_complexity Low_complexity 1 21 0 706 298 84 49 chr3_random 6251052 6251458 -2176823 - MLT1J2 LTR MaLR -15 435 16 513 243 108 0 chr3_random 6252896 6253044 -2175237 - MER58B DNA MER1_type -1 340 177 694 342 18 0 chr3_random 6253127 6253355 -2174926 - MLT1J2 LTR MaLR -185 265 34 288 295 114 0 chr3_random 6253635 6253740 -2174541 - MIR SINE MIR -85 177 61 792 263 88 29 chr3_random 6254323 6254741 -2173540 + MLT1D LTR MaLR 1 505 0 834 293 129 49 chr3_random 6256017 6256382 -2171899 - LTR40a LTR ERVL -3 516 123 304 211 53 40 chr3_random 6256398 6256474 -2171807 + MER2 DNA MER2_type 264 340 -5 1127 231 17 8 chr3_random 6256498 6256732 -2171549 + MER8 DNA MER2_type 4 239 0 396 289 49 49 chr3_random 6257603 6257807 -2170474 - L1ME LINE L1 -302 5819 5616 2534 39 10 3 chr3_random 6257821 6258127 -2170154 + AluY SINE Alu 3 310 -1 493 127 82 0 chr3_random 6258380 6258490 -2169791 - AluSq/x SINE Alu -188 124 6 1741 95 8 4 chr3_random 6259550 6259793 -2168488 - AluSc SINE Alu -7 302 59 855 109 29 22 chr3_random 6259839 6260012 -2168269 + AluSc SINE Alu 144 317 0 260 358 73 8 chr3_random 6260052 6260175 -2168106 + L2 LINE L2 3141 3271 -1 2274 114 0 0 chr3_random 6260439 6260737 -2167544 + AluSx SINE Alu 1 298 -14 555 231 147 18 chr3_random 6261051 6261276 -2167005 + L1ME4a LINE L1 5579 5832 -289 394 284 83 52 chr3_random 6261283 6261512 -2166769 - MIR SINE MIR -16 246 11 1953 183 27 58 chr3_random 6262124 6262157 -2166124 - L1MC4 LINE L1 -5 8037 8005 1446 149 104 38 chr3_random 6262157 6262446 -2165835 + AluJo SINE Alu 1 308 -4 1953 183 27 58 chr3_random 6262446 6262914 -2165367 - L1MC4 LINE L1 -37 8005 7552 1837 138 7 10 chr3_random 6262914 6263212 -2165069 - AluY SINE Alu -14 297 1 1953 183 27 58 chr3_random 6263212 6263266 -2165015 - L1MC4 LINE L1 -490 7552 7498 619 218 0 24 chr3_random 6263400 6263524 -2164757 - FLAM_A SINE Alu -12 121 1 311 111 0 0 chr3_random 6263480 6263525 -2164756 - Alu SINE Alu -257 45 1 * 2403 78 9 40 chr3_random 6263525 6263871 -2164410 - THE1C LTR MaLR -40 335 1 212 232 18 0 chr3_random 6264310 6264366 -2163915 + L2 LINE L2 3257 3313 0 2225 121 3 0 chr3_random 6264454 6264760 -2163521 + AluSx SINE Alu 1 307 -5 1960 96 4 11 chr3_random 6265426 6265696 -2162585 - AluSq SINE Alu -9 304 37 188 345 35 44 chr3_random 6265780 6265893 -2162388 + L2 LINE L2 2970 3081 -191 2394 219 41 29 chr3_random 6265920 6265968 -2162313 + L1M2 LINE L1 2300 2346 -4502 1745 181 7 7 chr3_random 6265968 6266267 -2162014 + AluJo SINE Alu 4 302 -10 2394 219 41 29 chr3_random 6266267 6267003 -2161278 + L1M2 LINE L1 2346 3107 -3741 1363 198 41 63 chr3_random 6267003 6267322 -2160959 + AluJb SINE Alu 1 312 0 2394 219 41 29 chr3_random 6267322 6267683 -2160598 + L1M2 LINE L1 3107 3462 -3386 893 236 69 37 chr3_random 6267810 6268017 -2160264 - MIR SINE MIR -7 255 37 1958 155 10 0 chr3_random 6268017 6268313 -2159968 + AluSx SINE Alu 14 312 0 893 236 69 37 chr3_random 6268313 6268351 -2159930 - MIR SINE MIR -225 37 2 748 197 0 0 chr3_random 6268460 6268587 -2159694 - FLAM_A SINE Alu -6 127 1 2085 70 3 92 chr3_random 6268766 6269082 -2159199 + AluY SINE Alu 1 288 -23 738 99 0 0 chr3_random 6269084 6269185 -2159096 - AluS SINE Alu -212 101 1 612 279 137 2 chr3_random 6269301 6269589 -2158692 + L2 LINE L2 2777 3113 -200 195 42 0 0 chr3_random 6269591 6269615 -2158666 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1887 99 23 0 chr3_random 6269616 6269879 -2158402 - AluSx SINE Alu -43 269 1 751 136 0 0 chr3_random 6269883 6270001 -2158280 - FLAM_C SINE Alu -9 134 17 758 96 0 0 chr3_random 6270308 6270412 -2157869 - AluSq/x SINE Alu -208 104 1 3001 109 4 45 chr3_random 6270412 6270927 -2157354 + Tigger4(Zombi) DNA MER2_type 2238 2731 0 2121 83 22 0 chr3_random 6271542 6271845 -2156436 - AluSp SINE Alu 0 309 1 198 267 297 0 chr3_random 6271973 6272074 -2156207 + MIR SINE MIR 76 206 -56 1834 127 3 85 chr3_random 6272590 6272788 -2155493 - AluSc SINE Alu -5 304 142 2307 64 4 0 chr3_random 6272788 6273069 -2155212 - AluY SINE Alu -29 282 1 1834 127 3 85 chr3_random 6273069 6273201 -2155080 - AluSc SINE Alu -167 142 1 2426 91 7 0 chr3_random 6273202 6273510 -2154771 - AluSx SINE Alu -2 310 1 503 228 79 140 chr3_random 6273784 6274012 -2154269 + MIR SINE MIR 5 218 -44 284 269 0 0 chr3_random 6275014 6275081 -2153200 + MIR SINE MIR 122 188 -74 36 23 0 0 chr3_random 6275122 6275165 -2153116 + AT_rich Low_complexity Low_complexity 1 43 0 694 148 0 0 chr3_random 6275171 6275293 -2152988 - MER2 DNA MER2_type -139 206 85 1614 163 0 80 chr3_random 6275344 6275497 -2152784 - AluJo SINE Alu -24 288 171 2329 101 3 0 chr3_random 6275497 6275793 -2152488 - AluSp SINE Alu -16 297 1 1614 163 0 80 chr3_random 6275793 6275952 -2152329 - AluJo SINE Alu -141 171 1 261 204 173 55 chr3_random 6276163 6276319 -2151962 - L1M4 LINE L1 -2928 3218 3082 2001 153 0 3 chr3_random 6276319 6276607 -2151674 - AluSx SINE Alu -25 287 1 261 204 173 55 chr3_random 6276607 6276674 -2151607 - L1M4 LINE L1 -3064 3082 3024 2181 128 0 13 chr3_random 6276674 6276986 -2151295 - AluSx SINE Alu -4 308 1 261 204 173 55 chr3_random 6276986 6277050 -2151231 - L1M4 LINE L1 -3122 3024 2896 2032 165 62 23 chr3_random 6277314 6278188 -2150093 + L1M4 LINE L1 4869 5772 -406 1364 185 65 52 chr3_random 6278317 6278793 -2149488 + L1MC5 LINE L1 7161 7642 -319 1467 136 14 0 chr3_random 6278868 6279089 -2149192 - AluSc SINE Alu -21 288 65 1254 99 0 0 chr3_random 6279123 6279284 -2148997 + AluSq SINE Alu 1 161 -152 478 81 95 14 chr3_random 6279284 6279358 -2148923 + AluSg/x SINE Alu 212 291 -21 468 245 69 5 chr3_random 6279363 6279567 -2148714 + L1MC5 LINE L1 7695 7911 -50 1706 168 32 23 chr3_random 6279587 6279896 -2148385 - AluSx SINE Alu 0 312 1 822 140 45 0 chr3_random 6279898 6280055 -2148226 + Charlie1a DNA MER1_type 74 237 -1218 10117 119 40 2 chr3_random 6280177 6281735 -2146546 - MER52-int LTR ERV1 -60 7031 5414 688 53 21 0 chr3_random 6281725 6281819 -2146462 - MER52-int LTR ERV1 -6421 670 575 * 968 229 162 31 chr3_random 6281919 6282333 -2145948 + HAL1 LINE L1 1553 2020 -487 1848 120 65 0 chr3_random 6282339 6282614 -2145667 + AluSq SINE Alu 6 298 -15 781 212 54 29 chr3_random 6282779 6283020 -2145261 + MER112 DNA MER1_type 8 254 -6 23 68 0 0 chr3_random 6283434 6283478 -2144803 + AT_rich Low_complexity Low_complexity 1 44 0 1767 201 3 0 chr3_random 6283479 6283782 -2144499 + AluJo SINE Alu 1 304 -8 218 394 67 18 chr3_random 6286068 6286233 -2142048 + L2 LINE L2 3096 3268 -4 403 323 46 49 chr3_random 6286257 6286520 -2141761 - L1M4 LINE L1 -1213 4933 4672 2354 68 3 16 chr3_random 6286533 6286842 -2141439 - AluY SINE Alu -6 305 1 2109 201 44 5 chr3_random 6287010 6287422 -2140859 + MSTA LTR MaLR 1 428 0 2674 197 31 2 chr3_random 6287422 6288002 -2140279 + MSTA-int LTR MaLR 1 597 -1054 11097 45 1 3 chr3_random 6288102 6290335 -2137946 + L1PA3 LINE L1 3906 6134 -21 21 0 0 0 chr3_random 6290471 6290492 -2137789 + AT_rich Low_complexity Low_complexity 1 21 0 2425 75 3 3 chr3_random 6291555 6291862 -2136419 + AluSp SINE Alu 1 307 -6 1609 189 0 4 chr3_random 6291862 6292137 -2136144 - AluJb SINE Alu -38 274 1 759 194 33 61 chr3_random 6292491 6292671 -2135610 - AluJo SINE Alu -137 175 1 483 76 152 13 chr3_random 6292697 6292776 -2135505 + AluSg SINE Alu 1 90 -220 2613 193 128 32 chr3_random 6292877 6293524 -2134757 + MER52A LTR ERV1 571 1279 -476 351 128 47 23 chr3_random 6293531 6293617 -2134664 + L1M LINE L1 5261 5348 -952 409 284 0 0 chr3_random 6293617 6293712 -2134569 + MER52A LTR ERV1 1 95 -1660 229 156 22 0 chr3_random 6293718 6293763 -2134518 + MER52A LTR ERV1 1073 1118 -637 2377 197 30 6 chr3_random 6293774 6294241 -2134040 + MER52A LTR ERV1 1278 1755 0 2693 158 48 2 chr3_random 6294242 6294705 -2133576 + MER52A-int LTR ERV1 1 484 -6607 354 179 15 0 chr3_random 6295763 6295830 -2132451 + Tigger2 DNA MER2_type 1 68 -2650 757 246 0 17 chr3_random 6295868 6296047 -2132234 - MER8 DNA MER2_type -63 176 1 488 301 35 50 chr3_random 6297116 6297147 -2131134 + MIR SINE MIR 3 33 -229 2310 62 0 62 chr3_random 6297147 6297455 -2130826 + AluY SINE Alu 1 289 -22 488 301 35 50 chr3_random 6297455 6297622 -2130659 + MIR SINE MIR 33 198 -64 22 0 0 0 chr3_random 6300330 6300352 -2127929 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr3_random 6301939 6301963 -2126318 + (T)n Simple_repeat Simple_repeat 1 24 0 558 339 84 26 chr3_random 6301963 6302522 -2125759 - L1MEd LINE L1 -900 1590 967 233 194 0 16 chr3_random 6302628 6302690 -2125591 + (TATG)n Simple_repeat Simple_repeat 4 64 0 239 0 32 0 chr3_random 6303640 6303671 -2124610 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2552 130 3 0 chr3_random 6303696 6304066 -2124215 - THE1C LTR MaLR 0 375 5 9517 133 34 17 chr3_random 6304066 6305618 -2122663 - THE1C-int LTR MaLR 0 1580 1 2657 105 11 0 chr3_random 6305618 6305989 -2122292 - THE1C LTR MaLR 0 375 1 257 402 37 0 chr3_random 6306395 6306559 -2121722 - MIR3 SINE MIR -1 207 38 875 273 113 3 chr3_random 6308321 6308632 -2119649 - MLT1K LTR MaLR -5 583 239 366 309 0 0 chr3_random 6308681 6308778 -2119503 - MLT1K LTR MaLR -490 98 2 240 323 32 11 chr3_random 6309348 6309441 -2118840 + MIR SINE MIR 54 148 -114 623 324 49 25 chr3_random 6310157 6310401 -2117880 + MIR SINE MIR 3 252 -10 325 361 71 26 chr3_random 6310857 6311012 -2117269 + L2 LINE L2 3103 3264 -8 21 0 0 0 chr3_random 6311248 6311269 -2117012 + AT_rich Low_complexity Low_complexity 1 21 0 227 197 0 82 chr3_random 6312518 6312579 -2115702 + MLT2D LTR ERVL 294 349 -65 186 303 61 0 chr3_random 6312689 6312755 -2115526 - L3 LINE CR1 -44 1533 1464 261 0 0 0 chr3_random 6313054 6313083 -2115198 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 1583 196 11 0 chr3_random 6313084 6313354 -2114927 - AluSx SINE Alu -39 273 1 2843 7 0 0 chr3_random 6313574 6313881 -2114400 - AluYa5 SINE Alu -4 307 1 25 31 0 0 chr3_random 6314048 6314080 -2114201 + AT_rich Low_complexity Low_complexity 1 32 0 496 86 0 12 chr3_random 6314074 6314155 -2114126 - L1MA1 LINE L1 -4 6298 6219 1355 100 17 49 chr3_random 6314158 6314374 -2113907 + L1M1 LINE L1 5115 5323 -886 2238 119 0 0 chr3_random 6314374 6314677 -2113604 + AluSp SINE Alu 1 303 -10 1355 100 17 49 chr3_random 6314677 6314817 -2113464 + L1M1 LINE L1 5323 5466 -743 928 130 0 0 chr3_random 6315877 6316023 -2112258 - L1MA3 LINE L1 -45 6260 6115 401 328 45 45 chr3_random 6316124 6316456 -2111825 + L2 LINE L2 1836 2167 -1147 296 288 81 0 chr3_random 6316481 6316592 -2111689 - L2 LINE L2 -52 3261 3142 27 0 0 0 chr3_random 6317054 6317081 -2111200 + AT_rich Low_complexity Low_complexity 1 27 0 1788 155 71 11 chr3_random 6317763 6318117 -2110164 + THE1C LTR MaLR 1 375 0 25 0 0 0 chr3_random 6318589 6318614 -2109667 + AT_rich Low_complexity Low_complexity 1 25 0 530 239 90 30 chr3_random 6318907 6319074 -2109207 - MER5B DNA MER1_type 0 178 2 289 226 16 0 chr3_random 6319316 6319378 -2108903 + MER5A DNA MER1_type 41 103 -86 3783 199 60 20 chr3_random 6320099 6321659 -2106622 - L1MB7 LINE L1 -9 6175 4561 1034 256 51 63 chr3_random 6321659 6322170 -2106111 - MLT1D LTR MaLR 0 505 1 750 190 66 9 chr3_random 6322171 6322397 -2105884 - L1MB7 LINE L1 -1582 4564 4326 4434 198 31 15 chr3_random 6322524 6323181 -2105100 + L1MA10 LINE L1 4301 4983 -1319 2312 92 3 3 chr3_random 6323181 6323475 -2104806 - AluSp SINE Alu -19 294 1 4434 198 31 15 chr3_random 6323475 6324062 -2104219 + L1MA10 LINE L1 4983 5559 -743 1893 156 93 86 chr3_random 6324066 6324552 -2103729 + LTR2B LTR ERV1 1 489 -1 3325 186 37 25 chr3_random 6324552 6325305 -2102976 + L1MA10 LINE L1 5559 6320 -14 193 329 57 3 chr3_random 6325334 6325473 -2102808 + MIR SINE MIR 67 250 -12 257 367 44 19 chr3_random 6325611 6325769 -2102512 + MIR SINE MIR 29 190 -72 347 283 82 25 chr3_random 6326424 6326583 -2101698 + MIR SINE MIR 81 248 -14 198 0 0 0 chr3_random 6326613 6326635 -2101646 + (TTTTTG)n Simple_repeat Simple_repeat 4 25 0 295 266 108 22 chr3_random 6326862 6327001 -2101280 - L2 LINE L2 -4 3309 3159 320 264 141 31 chr3_random 6328759 6328922 -2099359 - L2 LINE L2 -443 2871 2691 819 232 116 17 chr3_random 6328969 6329202 -2099079 - MIR SINE MIR -3 259 4 1846 210 66 25 chr3_random 6329248 6329687 -2098594 - LTR2B LTR ERV1 0 490 34 11782 74 1 6 chr3_random 6329707 6331243 -2097038 - Harlequin LTR ERV1 0 6896 5369 605 189 0 16 chr3_random 6331243 6331365 -2096916 + LTR2B LTR ERV1 371 490 0 231 226 0 0 chr3_random 6331581 6331634 -2096647 + (TAA)n Simple_repeat Simple_repeat 2 54 0 247 259 122 61 chr3_random 6331758 6331889 -2096392 + L2 LINE L2 458 596 -2718 346 362 83 18 chr3_random 6331891 6332109 -2096172 + L2 LINE L2 938 1169 -2145 468 288 85 7 chr3_random 6332192 6332345 -2095936 + MER5B DNA MER1_type 13 177 -1 266 247 14 27 chr3_random 6332345 6332413 -2095868 + L2 LINE L2 1364 1430 -1884 460 345 97 46 chr3_random 6332413 6333140 -2095141 + L2 LINE L2 2477 3239 -33 25 31 0 0 chr3_random 6333863 6333895 -2094386 + AT_rich Low_complexity Low_complexity 1 32 0 326 315 76 45 chr3_random 6333965 6334011 -2094270 - L1MEc LINE L1 -3149 2980 2937 14986 34 1 1 chr3_random 6334011 6336580 -2091701 + L1PA4 LINE L1 3587 6154 -1 326 315 76 45 chr3_random 6336580 6337070 -2091211 - L1MEc LINE L1 -3192 2937 2427 22 56 0 0 chr3_random 6337088 6337124 -2091157 + AT_rich Low_complexity Low_complexity 1 36 0 305 331 132 28 chr3_random 6337134 6337385 -2090896 - L1MEc LINE L1 -3760 2369 2093 2174 221 22 13 chr3_random 6337760 6338212 -2090069 - MER82 DNA MER2_type 0 653 198 1614 148 4 0 chr3_random 6338217 6338461 -2089820 + AluSx SINE Alu 31 275 -37 370 245 63 7 chr3_random 6338510 6338653 -2089628 - MER82 DNA MER2_type -450 203 53 880 259 5 0 chr3_random 6339019 6339208 -2089073 - MER82 DNA MER2_type -463 190 1 366 283 28 19 chr3_random 6339263 6339280 -2089001 - L1MEc LINE L1 -875 1615 1600 184 29 29 29 chr3_random 6339280 6339314 -2088967 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 366 283 28 19 chr3_random 6339314 6339460 -2088821 - L1MEc LINE L1 -890 1600 1409 405 317 58 45 chr3_random 6339533 6340192 -2088089 - L1MEc LINE L1 -4908 1211 545 1311 195 42 42 chr3_random 6340657 6340873 -2087408 + MER44D DNA MER2_type 5 220 -2271 252 0 0 0 chr3_random 6340873 6340901 -2087380 + (TG)n Simple_repeat Simple_repeat 2 29 0 1311 195 42 42 chr3_random 6340901 6341018 -2087263 + MER44D DNA MER2_type 219 608 -1 662 192 103 7 chr3_random 6341027 6341173 -2087108 + MLT1B LTR MaLR 3 162 -228 424 157 0 14 chr3_random 6341216 6341306 -2086975 + MLT1B LTR MaLR 324 390 0 1949 143 55 22 chr3_random 6341315 6341678 -2086603 - THE1C LTR MaLR 0 375 1 7101 104 71 197 chr3_random 6341678 6343486 -2084795 - THE1C-int LTR MaLR 0 1580 1 1926 159 50 19 chr3_random 6343486 6343850 -2084431 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr3_random 6344264 6344286 -2083995 + AT_rich Low_complexity Low_complexity 1 22 0 1394 192 11 38 chr3_random 6344289 6344555 -2083726 + AluJo SINE Alu 1 259 -53 1172 298 65 22 chr3_random 6344583 6345443 -2082838 + L1 LINE L1 2938 3834 -2312 2112 107 0 58 chr3_random 6345575 6345903 -2082378 + AluY SINE Alu 3 311 0 216 0 0 0 chr3_random 6347530 6347554 -2080727 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5268 165 23 8 chr3_random 6347814 6348804 -2079477 - L1PA16 LINE L1 -3 6163 5139 1967 168 97 8 chr3_random 6348804 6349197 -2079084 - MSTA LTR MaLR 0 428 1 5268 165 23 8 chr3_random 6349197 6349825 -2078456 - L1PA16 LINE L1 -1027 5139 4522 3183 210 22 3 chr3_random 6349829 6350547 -2077734 + L1PA16 LINE L1 3784 4515 -1631 2099 120 7 7 chr3_random 6350559 6350859 -2077422 - AluSx SINE Alu -12 300 1 488 106 12 0 chr3_random 6351037 6351122 -2077159 + (TA)n Simple_repeat Simple_repeat 2 87 0 617 278 151 5 chr3_random 6354856 6355068 -2073213 + MIR SINE MIR 20 262 0 219 189 0 0 chr3_random 6355205 6355258 -2073023 + CT-rich Low_complexity Low_complexity 2 54 0 193 375 90 20 chr3_random 6355840 6356085 -2072196 - L2 LINE L2 -472 2842 2581 261 271 33 90 chr3_random 6356516 6356638 -2071643 - MIR SINE MIR -76 186 72 454 317 43 82 chr3_random 6357107 6357207 -2071074 - MLT1J LTR MaLR 0 511 409 2183 103 7 3 chr3_random 6357207 6357509 -2070772 + AluSc SINE Alu 1 303 -6 454 317 43 82 chr3_random 6357509 6357824 -2070457 - MLT1J LTR MaLR -102 409 112 22 0 0 0 chr3_random 6358721 6358743 -2069538 + AT_rich Low_complexity Low_complexity 1 22 0 638 281 14 47 chr3_random 6358899 6359105 -2069176 - MIR SINE MIR -5 257 56 242 269 0 0 chr3_random 6359257 6359309 -2068972 + L2 LINE L2 3216 3267 -5 24 67 0 0 chr3_random 6359362 6359407 -2068874 + AT_rich Low_complexity Low_complexity 1 45 0 295 41 41 0 chr3_random 6360119 6360168 -2068113 + (CA)n Simple_repeat Simple_repeat 2 52 0 684 232 0 7 chr3_random 6360311 6360449 -2067832 + MER82 DNA MER2_type 1 137 -516 225 0 0 0 chr3_random 6360449 6360474 -2067807 + (T)n Simple_repeat Simple_repeat 1 25 0 1487 176 0 16 chr3_random 6360474 6360729 -2067552 - AluJb SINE Alu -61 251 1 5865 8 0 0 chr3_random 6360778 6361435 -2066846 - L1HS LINE L1 0 6155 5499 2072 234 43 11 chr3_random 6361436 6361897 -2066384 + MER82 DNA MER2_type 178 653 0 1164 130 14 74 chr3_random 6362672 6362888 -2065393 - AluSg/x SINE Alu -13 297 95 434 310 106 26 chr3_random 6364631 6364857 -2063424 - MIR SINE MIR -11 251 8 22 35 0 0 chr3_random 6365592 6365621 -2062660 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3_random 6366051 6366075 -2062206 + (CA)n Simple_repeat Simple_repeat 2 25 0 284 197 30 0 chr3_random 6366650 6366716 -2061565 + MER116 DNA Mariner 1 68 -12 212 0 36 0 chr3_random 6368157 6368185 -2060096 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2092 121 3 3 chr3_random 6368198 6368480 -2059801 - AluSp SINE Alu -31 282 1 612 255 31 16 chr3_random 6369314 6369506 -2058775 + L1MEc LINE L1 17 211 -6185 1934 262 89 21 chr3_random 6369522 6370411 -2057870 + L1MEc LINE L1 847 1795 -4601 5371 66 0 30 chr3_random 6370718 6371430 -2056851 - LTR8 LTR ERV1 0 691 1 2743 172 77 44 chr3_random 6372237 6372941 -2055340 - LTR8A LTR ERV1 0 727 1 241 258 15 15 chr3_random 6373201 6373267 -2055014 + MLT1J LTR MaLR 234 299 -212 404 263 183 7 chr3_random 6373386 6373523 -2054758 + MER5A DNA MER1_type 28 188 -1 24 53 0 0 chr3_random 6373664 6373702 -2054579 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr3_random 6373778 6373815 -2054466 + AT_rich Low_complexity Low_complexity 1 37 0 271 333 20 0 chr3_random 6376421 6376523 -2051758 + C-rich Low_complexity Low_complexity 2 105 0 2797 181 69 49 chr3_random 6376942 6377655 -2050626 - LTR8A LTR ERV1 0 727 1 1826 222 102 89 chr3_random 6377869 6378870 -2049411 + LTR28 LTR ERV1 1 1020 0 363 136 0 0 chr3_random 6379315 6379374 -2048907 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 1312 130 42 0 chr3_random 6379374 6379589 -2048692 + Tigger7 DNA MER2_type 2267 2490 -1 251 369 102 31 chr3_random 6379602 6379984 -2048297 - L2 LINE L2 -451 2863 2455 196 329 14 14 chr3_random 6380054 6380124 -2048157 - L2 LINE L2 -1001 2313 2244 203 250 62 62 chr3_random 6380352 6380432 -2047849 + L2 LINE L2 3214 3293 -20 29 47 0 0 chr3_random 6380695 6380738 -2047543 + AT_rich Low_complexity Low_complexity 1 43 0 1924 173 128 5 chr3_random 6381092 6381467 -2046814 + MSTB LTR MaLR 1 421 -5 244 239 14 14 chr3_random 6381576 6381647 -2046634 + (TATATG)n Simple_repeat Simple_repeat 1 71 0 479 159 0 55 chr3_random 6381650 6381832 -2046449 + (TA)n Simple_repeat Simple_repeat 2 173 0 201 306 20 0 chr3_random 6382111 6382160 -2046121 + L2 LINE L2 3246 3295 -18 2127 180 50 24 chr3_random 6382717 6383134 -2045147 - MSTA LTR MaLR 0 428 1 8316 162 54 22 chr3_random 6383134 6384735 -2043546 - MSTA-int LTR MaLR 0 1651 1 2109 201 44 5 chr3_random 6384735 6385147 -2043134 - MSTA LTR MaLR 0 428 1 2408 86 0 6 chr3_random 6385315 6385628 -2042653 + AluY SINE Alu 1 311 0 864 267 47 40 chr3_random 6385756 6386090 -2042191 + MER21B LTR ERV1 406 714 -4 24 0 0 0 chr3_random 6386371 6386395 -2041886 + AT_rich Low_complexity Low_complexity 1 24 0 1670 252 66 25 chr3_random 6388223 6388694 -2039587 - MER77 LTR ERV1 -8 597 132 5270 148 30 17 chr3_random 6388719 6389578 -2038703 - L1PA16 LINE L1 -9 6860 5975 2154 120 0 7 chr3_random 6389578 6389879 -2038402 - AluSq SINE Alu -14 299 1 5270 148 30 17 chr3_random 6389879 6390201 -2038080 - L1PA16 LINE L1 -894 5975 5659 12050 199 19 15 chr3_random 6390215 6393902 -2034379 - L1PA16 LINE L1 -2215 4634 925 489 220 46 18 chr3_random 6393905 6394014 -2034267 - MER77 LTR ERV1 -454 151 40 1258 262 131 5 chr3_random 6395325 6395737 -2032544 - MER110A LTR ERV1 -4 464 1 1982 122 14 3 chr3_random 6396283 6396571 -2031710 + AluSx SINE Alu 1 291 -21 1232 172 5 186 chr3_random 6396938 6397368 -2030913 - MLT1A1 LTR MaLR -3 362 11 266 266 177 26 chr3_random 6397798 6397911 -2030370 - MIR SINE MIR -13 249 120 1212 338 83 24 chr3_random 6398800 6399622 -2028659 - L2 LINE L2 -421 2893 2024 27 29 0 0 chr3_random 6400025 6400059 -2028222 + AT_rich Low_complexity Low_complexity 1 34 0 265 326 58 7 chr3_random 6400293 6400431 -2027850 + MIR SINE MIR 112 256 -6 802 281 10 0 chr3_random 6400551 6400754 -2027527 + MIR SINE MIR 1 205 -57 29 28 0 0 chr3_random 6403796 6403832 -2024449 + AT_rich Low_complexity Low_complexity 1 36 0 213 281 18 0 chr3_random 6403898 6403955 -2024326 + GA-rich Low_complexity Low_complexity 1 58 0 182 114 0 29 chr3_random 6403982 6404017 -2024264 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 372 276 177 32 chr3_random 6405916 6406199 -2022082 + L1M4 LINE L1 2878 3201 -2945 263 295 14 22 chr3_random 6406274 6406413 -2021868 + L1M4 LINE L1 3362 3499 -2647 183 80 0 0 chr3_random 6406585 6406610 -2021671 + (A)n Simple_repeat Simple_repeat 1 25 0 25 65 0 0 chr3_random 6407016 6407062 -2021219 + AT_rich Low_complexity Low_complexity 1 46 0 226 325 84 61 chr3_random 6407179 6407490 -2020791 - HAL1 LINE L1 -1923 584 267 2478 65 7 0 chr3_random 6407638 6407946 -2020335 + AluSp SINE Alu 2 311 -2 33 56 0 0 chr3_random 6408017 6408071 -2020210 + AT_rich Low_complexity Low_complexity 1 54 0 267 279 47 12 chr3_random 6408524 6408610 -2019671 + MER102a DNA MER1_type 242 330 0 1687 224 71 16 chr3_random 6410176 6410705 -2017576 + MLT1E1 LTR MaLR 16 654 0 833 160 0 0 chr3_random 6410866 6410991 -2017290 + FLAM_C SINE Alu 1 125 -18 3617 138 8 5 chr3_random 6412632 6413226 -2015055 - L1MC1 LINE L1 0 6333 5738 1244 282 17 5 chr3_random 6413234 6413638 -2014643 - L1M4 LINE L1 -3403 2743 2335 354 227 0 0 chr3_random 6413638 6413704 -2014577 - MER2 DNA MER2_type -1 344 279 3209 210 102 19 chr3_random 6413732 6415037 -2013244 + L1PB1 LINE L1 6 1570 -5293 4643 119 14 1 chr3_random 6415037 6415750 -2012531 + LTR30 LTR ERV1 1 722 0 28302 96 9 2 chr3_random 6415750 6422134 -2006147 + HERV30 LTR ERV1 2 6509 -1748 258 95 24 0 chr3_random 6422137 6422179 -2006102 + LTR19-int LTR ERV1 5011 5053 -533 4365 139 7 9 chr3_random 6422207 6422898 -2005383 + LTR19-int LTR ERV1 6509 7198 -1059 1007 209 29 0 chr3_random 6422913 6423119 -2005162 + LTR30 LTR ERV1 511 722 0 14739 197 12 13 chr3_random 6423119 6427980 -2000301 + L1PB1 LINE L1 1567 6486 -381 459 52 0 0 chr3_random 6427980 6428038 -2000243 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 518 144 16 72 chr3_random 6428049 6428174 -2000107 - MER2 DNA MER2_type -146 199 82 238 235 47 24 chr3_random 6428202 6428287 -1999994 - L1MC4 LINE L1 -1339 6703 6617 296 211 22 22 chr3_random 6428292 6428382 -1999899 - L1MC4 LINE L1 -1339 6703 6614 258 192 0 0 chr3_random 6428386 6428438 -1999843 + (TA)n Simple_repeat Simple_repeat 2 53 0 253 212 71 24 chr3_random 6428438 6428523 -1999758 - L1MC4 LINE L1 -1339 6703 6615 233 218 46 23 chr3_random 6428556 6428643 -1999638 - L1MC4 LINE L1 -1339 6703 6615 259 247 47 0 chr3_random 6428676 6428761 -1999520 - L1MC4 LINE L1 -1339 6703 6615 228 193 18 0 chr3_random 6428754 6428811 -1999470 + L1MCa LINE L1 2007 2064 -4362 * 192 143 0 0 chr3_random 6428811 6428836 -1999445 + (TA)n Simple_repeat Simple_repeat 1 28 -7 2262 144 3 3 chr3_random 6428836 6429204 -1999077 + L1PB1 LINE L1 6499 6866 -1 192 143 0 0 chr3_random 6429204 6429213 -1999068 + (TA)n Simple_repeat Simple_repeat 27 35 0 1239 154 20 0 chr3_random 6429259 6429460 -1998821 - MER2 DNA MER2_type -135 210 6 1320 216 109 9 chr3_random 6429505 6429834 -1998447 - MLT1A1 LTR MaLR 0 365 4 1895 218 39 2 chr3_random 6429837 6430249 -1998032 - MLT1A1-int LTR MaLR 0 1735 1309 3074 158 49 20 chr3_random 6430250 6430800 -1997481 + MER50 LTR ERV1 1 566 -168 344 290 21 0 chr3_random 6430979 6431072 -1997209 - MLT1A1-int LTR MaLR -955 780 686 2729 236 32 9 chr3_random 6431246 6431893 -1996388 - MLT1A1-int LTR MaLR -1073 662 1 674 239 28 23 chr3_random 6431893 6432069 -1996212 - MLT1A1 LTR MaLR 0 365 189 418 139 0 0 chr3_random 6432091 6432163 -1996118 + Alu SINE Alu 230 301 -9 543 208 46 15 chr3_random 6432163 6432293 -1995988 - MLT1A1 LTR MaLR -229 136 3 1077 201 12 25 chr3_random 6432295 6432635 -1995646 - L1MCa LINE L1 -3949 2477 2244 3493 208 26 35 chr3_random 6432635 6433399 -1994882 - L1MCa LINE L1 -5648 778 22 195 42 0 0 chr3_random 6434244 6434268 -1994013 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 198 0 0 0 chr3_random 6434333 6434355 -1993926 + (CATATA)n Simple_repeat Simple_repeat 4 25 0 358 299 115 47 chr3_random 6434639 6435084 -1993197 + MARNA DNA Mariner 20 494 -92 21 0 0 0 chr3_random 6435494 6435515 -1992766 + AT_rich Low_complexity Low_complexity 1 21 0 26 98 0 0 chr3_random 6435648 6435730 -1992551 + AT_rich Low_complexity Low_complexity 1 82 0 370 354 66 42 chr3_random 6436052 6436462 -1991819 + L2 LINE L2 2879 3298 -15 1360 259 152 54 chr3_random 6436538 6437171 -1991110 + MER21B LTR ERV1 40 734 -129 361 339 99 6 chr3_random 6438787 6438815 -1989466 - MER5A DNA MER1_type -1 188 164 1051 134 0 134 chr3_random 6438815 6439068 -1989213 - MER20 DNA MER1_type 0 219 1 361 339 99 6 chr3_random 6439068 6439210 -1989071 - MER5A DNA MER1_type -25 164 2 468 244 171 6 chr3_random 6439920 6440096 -1988185 - L3 LINE CR1 -607 970 766 3142 175 65 25 chr3_random 6440504 6441145 -1987136 - MER39 LTR ERV1 0 707 1 449 299 155 54 chr3_random 6442085 6442420 -1985861 - L2 LINE L2 0 3272 2904 195 329 29 0 chr3_random 6442530 6442600 -1985681 + L2 LINE L2 2450 2521 -793 687 304 19 19 chr3_random 6442606 6442866 -1985415 - MIR SINE MIR -1 261 2 880 164 149 5 chr3_random 6443060 6443268 -1985013 + MER33 DNA MER1_type 5 242 -82 22 70 0 0 chr3_random 6443794 6443837 -1984444 + AT_rich Low_complexity Low_complexity 1 43 0 214 247 65 0 chr3_random 6444872 6444949 -1983332 - L2 LINE L2 -1 3271 3190 798 323 43 3 chr3_random 6445801 6446104 -1982177 + MER102a DNA MER1_type 11 325 -5 470 246 71 38 chr3_random 6448122 6448333 -1979948 - L1MC4a LINE L1 -1898 5910 5693 441 0 0 0 chr3_random 6448641 6448690 -1979591 + (TG)n Simple_repeat Simple_repeat 1 49 0 216 67 0 0 chr3_random 6449504 6449534 -1978747 + (CA)n Simple_repeat Simple_repeat 1 30 0 692 293 6 12 chr3_random 6450017 6450184 -1978097 + MER5B DNA MER1_type 10 175 -3 272 268 0 0 chr3_random 6450378 6450434 -1977847 + MER21B LTR ERV1 12 67 -796 327 214 0 0 chr3_random 6450474 6450530 -1977751 + MER21B LTR ERV1 12 67 -796 416 224 0 0 chr3_random 6450564 6450640 -1977641 + MER21B LTR ERV1 19 94 -769 * 3969 224 28 6 chr3_random 6450638 6451431 -1976850 + MER21B LTR ERV1 43 852 -11 410 175 249 37 chr3_random 6451455 6451583 -1976698 - MIR SINE MIR -56 152 2 2030 62 0 55 chr3_random 6452812 6453086 -1975195 - AluY SINE Alu -18 293 35 216 348 0 0 chr3_random 6453452 6453521 -1974760 - L2 LINE L2 -18 3295 3227 222 232 14 72 chr3_random 6453654 6453723 -1974558 + L2 LINE L2 2266 2330 -984 2624 228 7 47 chr3_random 6453764 6454444 -1973837 - MER82 DNA MER2_type 0 653 1 1243 321 120 27 chr3_random 6454507 6455533 -1972748 - L2 LINE L2 -137 3176 2040 243 320 77 0 chr3_random 6456430 6456508 -1971773 + L2 LINE L2 3173 3256 -16 2201 101 9 25 chr3_random 6456888 6457205 -1971076 + AluSq SINE Alu 1 312 -1 228 327 60 87 chr3_random 6457625 6457891 -1970390 - L2 LINE L2 -801 2513 2255 283 259 138 40 chr3_random 6458168 6458342 -1969939 + MIR3 SINE MIR 18 208 0 396 329 13 25 chr3_random 6458783 6458941 -1969340 - MIR SINE MIR -59 203 48 536 202 48 0 chr3_random 6459040 6459144 -1969137 + MER21B LTR ERV1 23 131 -732 1100 256 25 38 chr3_random 6459244 6459561 -1968720 + MER21B LTR ERV1 487 799 -64 392 289 178 20 chr3_random 6459632 6459784 -1968497 + MIR SINE MIR 30 205 -57 639 346 14 1 chr3_random 6459817 6460049 -1968232 - MIR SINE MIR -21 241 9 49 18 0 0 chr3_random 6460917 6460973 -1967308 + AT_rich Low_complexity Low_complexity 1 56 0 814 216 0 0 chr3_random 6460973 6461121 -1967160 - FAM SINE Alu -27 158 11 1410 135 0 0 chr3_random 6461135 6461365 -1966916 - L1MA5A LINE L1 -3 6294 6065 402 319 35 0 chr3_random 6461493 6461606 -1966675 - L2 LINE L2 0 3313 3197 367 233 23 23 chr3_random 6461857 6462029 -1966252 + (TA)n Simple_repeat Simple_repeat 1 172 0 704 304 99 41 chr3_random 6463111 6463473 -1964808 - MLT1J LTR MaLR -116 395 13 1459 225 35 14 chr3_random 6463642 6463989 -1964292 + MLT1A1 LTR MaLR 1 354 -11 21 36 0 0 chr3_random 6464996 6465024 -1963257 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr3_random 6465440 6465461 -1962820 + (CA)n Simple_repeat Simple_repeat 1 21 0 212 267 273 7 chr3_random 6465525 6465675 -1962606 - MIR SINE MIR -53 209 20 195 196 118 0 chr3_random 6466320 6466371 -1961910 - L2 LINE L2 -1 3271 3215 2192 122 73 14 chr3_random 6466429 6466773 -1961508 + THE1B LTR MaLR 1 364 0 11459 97 9 5 chr3_random 6466773 6468178 -1960103 + THE1B-int LTR MaLR 1 1415 -165 2083 131 0 0 chr3_random 6468178 6468469 -1959812 - AluSx SINE Alu -5 307 17 11459 97 9 5 chr3_random 6468469 6468636 -1959645 + THE1B-int LTR MaLR 1415 1580 0 1913 148 80 12 chr3_random 6468636 6468975 -1959306 + THE1B LTR MaLR 1 362 -2 189 262 0 0 chr3_random 6468993 6469054 -1959227 + GA-rich Low_complexity Low_complexity 4 64 0 234 296 0 28 chr3_random 6469138 6469209 -1959072 - L2 LINE L2 -60 3253 3185 7472 35 3 0 chr3_random 6469331 6470394 -1957887 - L1PA5 LINE L1 0 6154 5090 248 238 139 40 chr3_random 6471289 6471390 -1956891 + MIR SINE MIR 32 142 -66 212 257 110 64 chr3_random 6472161 6472270 -1956011 + L3 LINE CR1 1250 1363 -214 2256 108 0 13 chr3_random 6474315 6474629 -1953652 - AluSx SINE Alu -2 310 1 205 362 87 0 chr3_random 6475264 6475391 -1952890 + MIR3 SINE MIR 70 207 -1 481 249 82 78 chr3_random 6475621 6476070 -1952211 + LTR37B LTR ERV1 7 457 -11 2400 86 3 3 chr3_random 6476150 6476463 -1951818 - AluSq SINE Alu 0 313 1 1290 71 0 0 chr3_random 6477341 6477522 -1950759 + AluY SINE Alu 129 309 0 22 35 0 0 chr3_random 6477607 6477636 -1950645 + AT_rich Low_complexity Low_complexity 1 29 0 532 291 84 0 chr3_random 6478622 6478825 -1949456 + L1MC4 LINE L1 6462 6681 -1361 597 239 51 27 chr3_random 6478825 6479169 -1949112 - MER39 LTR ERV1 0 672 307 360 0 0 0 chr3_random 6479254 6479294 -1948987 + (TG)n Simple_repeat Simple_repeat 2 41 0 3081 158 42 0 chr3_random 6479316 6479843 -1948438 + MER34C LTR ERV1 37 585 0 2141 228 70 26 chr3_random 6479918 6480839 -1947442 + L1MC4 LINE L1 6780 7901 -141 342 0 0 0 chr3_random 6482223 6482261 -1946020 + (TG)n Simple_repeat Simple_repeat 1 38 0 4453 157 16 16 chr3_random 6483097 6483936 -1944345 + L1MA5 LINE L1 5462 6300 0 1459 196 17 76 chr3_random 6484039 6484396 -1943885 - MLT2B3 LTR ERVL -164 390 55 803 177 0 0 chr3_random 6484437 6484567 -1943714 - FLAM_C SINE Alu -3 130 1 21 36 0 0 chr3_random 6484832 6484860 -1943421 + AT_rich Low_complexity Low_complexity 1 28 0 236 298 12 12 chr3_random 6485438 6485522 -1942759 + MLT1J2 LTR MaLR 342 425 -25 291 326 0 12 chr3_random 6485794 6485880 -1942401 + MIR3 SINE MIR 100 184 -24 784 281 36 20 chr3_random 6486254 6486507 -1941774 + MIR SINE MIR 6 262 0 286 290 94 0 chr3_random 6487177 6487315 -1940966 + L1M4 LINE L1 21 171 -5948 411 285 27 11 chr3_random 6487764 6487950 -1940331 + L1M4 LINE L1 3804 3992 -2137 1921 135 55 52 chr3_random 6488877 6489240 -1939041 - THE1B LTR MaLR 0 364 1 285 259 90 35 chr3_random 6489348 6489549 -1938732 + L1M4 LINE L1 5171 5382 -747 309 202 158 14 chr3_random 6489598 6489725 -1938556 + L1M4 LINE L1 5509 5663 -504 231 146 0 0 chr3_random 6489832 6489873 -1938408 + (TA)n Simple_repeat Simple_repeat 2 42 0 2261 138 11 8 chr3_random 6490387 6490741 -1937540 - THE1A LTR MaLR 0 355 1 11418 103 6 1 chr3_random 6490741 6492313 -1935968 - THE1A-int LTR MaLR 0 1580 1 2168 109 11 64 chr3_random 6492313 6492688 -1935593 - THE1A LTR MaLR 0 355 1 1220 311 43 21 chr3_random 6493648 6494114 -1934167 + LTR67 LTR ERVL 81 556 -1 280 369 19 6 chr3_random 6494571 6494731 -1933550 + HERVL LTR ERVL 520 681 -4973 1533 190 3 27 chr3_random 6495382 6495677 -1932604 + AluJb SINE Alu 1 288 -24 464 323 47 22 chr3_random 6495980 6496212 -1932069 + HERVL LTR ERVL 1781 2018 -3746 1317 279 119 32 chr3_random 6496314 6496841 -1931440 - MLT1G1 LTR MaLR -22 573 1 357 258 0 11 chr3_random 6496841 6496930 -1931351 + HERVL LTR ERVL 2136 2223 -3541 1812 325 84 27 chr3_random 6496931 6498983 -1929298 + HERVL LTR ERVL 2433 4695 -1069 269 160 0 20 chr3_random 6499336 6499386 -1928895 + L2 LINE L2 3263 3311 -2 21 0 0 0 chr3_random 6500140 6500161 -1928120 + AT_rich Low_complexity Low_complexity 1 21 0 180 403 0 0 chr3_random 6500899 6500966 -1927315 + L2 LINE L2 3196 3262 -10 2160 99 3 0 chr3_random 6500966 6501288 -1926993 - AluSp SINE Alu 0 323 1 22 35 0 0 chr3_random 6501291 6501320 -1926961 + AT_rich Low_complexity Low_complexity 1 29 0 184 264 19 38 chr3_random 6501804 6501857 -1926424 - L2 LINE L2 -61 3252 3201 211 394 19 0 chr3_random 6502344 6502448 -1925833 + MIR SINE MIR 32 137 -71 195 320 72 32 chr3_random 6504058 6504183 -1924098 + MIR SINE MIR 110 239 -23 209 283 80 35 chr3_random 6504213 6504326 -1923955 + L3 LINE CR1 1365 1482 -95 452 277 186 14 chr3_random 6504379 6504599 -1923682 - MIR SINE MIR -1 261 4 4930 120 29 45 chr3_random 6504617 6504956 -1923325 - Tigger1 DNA MER2_type 0 2418 2075 1356 96 10 0 chr3_random 6504956 6505153 -1923128 - L1MA2 LINE L1 0 6304 6106 4930 120 29 45 chr3_random 6505153 6505640 -1922641 - Tigger1 DNA MER2_type -343 2075 1605 697 209 16 29 chr3_random 6505641 6505832 -1922449 + Ricksha DNA DNA 4 289 -1909 * 7445 168 18 24 chr3_random 6505830 6507303 -1920978 + Ricksha DNA DNA 1821 3247 -18 9840 146 16 5 chr3_random 6507308 6508906 -1919375 - Tigger1 DNA MER2_type -802 1616 1 203 326 0 33 chr3_random 6509184 6509276 -1919005 + GA-rich Low_complexity Low_complexity 3 91 0 240 254 60 30 chr3_random 6509791 6509858 -1918423 + L2 LINE L2 3196 3264 -8 372 286 39 96 chr3_random 6511022 6511249 -1917032 + L1ME LINE L1 5482 5682 -439 2269 95 7 0 chr3_random 6511249 6511544 -1916737 + AluSp SINE Alu 5 301 -12 372 286 39 96 chr3_random 6511544 6511679 -1916602 + L1ME LINE L1 5682 5823 -298 1789 246 42 17 chr3_random 6512455 6512934 -1915347 + MLT1F LTR MaLR 52 542 0 482 31 0 15 chr3_random 6513196 6513261 -1915020 + (GGAA)n Simple_repeat Simple_repeat 3 66 0 21 36 0 0 chr3_random 6513350 6513378 -1914903 + AT_rich Low_complexity Low_complexity 1 28 0 234 0 0 0 chr3_random 6513676 6513702 -1914579 + (T)n Simple_repeat Simple_repeat 1 26 0 244 334 40 99 chr3_random 6514722 6515024 -1913257 - L2 LINE L2 -525 2789 2506 21 57 0 0 chr3_random 6515189 6515224 -1913057 + AT_rich Low_complexity Low_complexity 1 35 0 603 247 0 70 chr3_random 6515337 6515523 -1912758 - L2 LINE L2 -3 3310 3138 18195 30 0 0 chr3_random 6517264 6520262 -1908019 + L1PA3 LINE L1 3205 6198 0 1509 232 0 10 chr3_random 6520491 6520793 -1907488 - AluJo SINE Alu -11 301 3 38 39 0 0 chr3_random 6520901 6520953 -1907328 + AT_rich Low_complexity Low_complexity 1 52 0 227 324 29 0 chr3_random 6521313 6521418 -1906863 - MIR SINE MIR -27 235 128 25 0 0 0 chr3_random 6521604 6521629 -1906652 + AT_rich Low_complexity Low_complexity 1 25 0 1750 249 147 27 chr3_random 6523072 6523658 -1904623 + MLT2F LTR ERVL 5 660 -3 639 90 0 0 chr3_random 6523708 6523808 -1904473 + (TA)n Simple_repeat Simple_repeat 2 101 0 286 133 0 0 chr3_random 6523820 6523865 -1904416 - MLT2A1 LTR ERVL -7 437 393 216 0 0 0 chr3_random 6523894 6523918 -1904363 + (TG)n Simple_repeat Simple_repeat 1 24 0 999 65 14 0 chr3_random 6524423 6524562 -1903719 - L1P LINE L1 -913 5233 5093 328 320 52 23 chr3_random 6524758 6524930 -1903351 - MIR SINE MIR -1 261 85 21 57 0 0 chr3_random 6524985 6525020 -1903261 + AT_rich Low_complexity Low_complexity 1 35 0 950 292 73 6 chr3_random 6526449 6526791 -1901490 + L2 LINE L2 1514 1878 -1436 849 299 99 14 chr3_random 6527274 6527629 -1900652 + L2 LINE L2 1891 2275 -1039 207 0 0 0 chr3_random 6527877 6527900 -1900381 + (TTG)n Simple_repeat Simple_repeat 2 24 0 789 312 74 13 chr3_random 6528021 6528332 -1899949 + L2 LINE L2 2302 2631 -683 384 278 21 0 chr3_random 6528382 6528479 -1899802 - MER5A DNA MER1_type -77 112 14 263 311 111 51 chr3_random 6528614 6529024 -1899257 + L2 LINE L2 2685 3144 -169 6893 107 27 19 chr3_random 6529029 6530091 -1898190 + MER11C LTR ERVK 1 1071 0 2973 81 3 0 chr3_random 6530100 6530483 -1897798 + MLT2A1 LTR ERVL 1 384 -60 5364 81 5 15 chr3_random 6530596 6531349 -1896932 + L1PA7 LINE L1 5406 6151 -3 483 381 94 29 chr3_random 6532314 6533037 -1895244 - L2 LINE L2 -12 3260 2491 6307 111 0 5 chr3_random 6533038 6533907 -1894374 - HSMAR1 DNA Mariner 0 1287 423 1078 32 0 0 chr3_random 6533907 6534033 -1894248 + L1PA4 LINE L1 6009 6134 -21 1197 34 7 0 chr3_random 6534037 6534185 -1894096 + L1PA4 LINE L1 6007 6155 0 2682 93 52 24 chr3_random 6534186 6534605 -1893676 - HSMAR1 DNA Mariner -854 433 3 310 276 26 0 chr3_random 6534886 6535002 -1893279 + (TA)n Simple_repeat Simple_repeat 2 120 0 1053 254 21 14 chr3_random 6535274 6535562 -1892719 + L1ME1 LINE L1 5870 6159 -7 1147 277 73 11 chr3_random 6536361 6536715 -1891566 + LTR16C LTR ERVL 112 487 -4 187 275 0 0 chr3_random 6537361 6537401 -1890880 - MIR SINE MIR -67 195 156 230 259 191 23 chr3_random 6538211 6538342 -1889939 + MIR SINE MIR 91 243 -19 1761 147 59 24 chr3_random 6538772 6539112 -1889169 + MLT1C LTR MaLR 97 448 -19 268 238 40 0 chr3_random 6539153 6539254 -1889027 + (TA)n Simple_repeat Simple_repeat 2 106 0 450 177 13 0 chr3_random 6539281 6539360 -1888921 - MER5B DNA MER1_type -83 95 16 4433 76 0 0 chr3_random 6539411 6539992 -1888289 - L1PA8 LINE L1 0 6172 5592 22 0 0 0 chr3_random 6540161 6540183 -1888098 + AT_rich Low_complexity Low_complexity 1 22 0 194 108 54 0 chr3_random 6541166 6541203 -1887078 + T-rich Low_complexity Low_complexity 2 40 0 2717 83 101 0 chr3_random 6541383 6541790 -1886491 + LTR7 LTR ERV1 1 448 -2 16942 101 14 33 chr3_random 6541792 6544947 -1883334 + HERVH LTR ERV1 1 2987 -4726 824 153 18 47 chr3_random 6544919 6545089 -1883192 + HERVH LTR ERV1 3126 3290 -4423 * 3343 116 6 6 chr3_random 6545079 6545581 -1882700 + HERVH LTR ERV1 3492 3993 -3720 4441 137 0 1 chr3_random 6545583 6546246 -1882035 + HERVH LTR ERV1 4488 5149 -2564 1367 139 19 0 chr3_random 6546247 6546463 -1881818 + HERVH LTR ERV1 5600 5819 -1894 * 2344 98 53 13 chr3_random 6546461 6546838 -1881443 + HERVH LTR ERV1 7322 7713 0 2782 81 98 0 chr3_random 6546838 6547246 -1881035 + LTR7 LTR ERV1 1 448 -2 2206 110 3 10 chr3_random 6547417 6547727 -1880554 - AluSc SINE Alu -1 308 1 771 212 29 0 chr3_random 6547777 6547947 -1880334 + MER5B DNA MER1_type 4 178 0 261 0 0 0 chr3_random 6548953 6548982 -1879299 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 459 0 0 0 chr3_random 6548981 6549032 -1879249 + (GA)n Simple_repeat Simple_repeat 2 52 0 188 277 62 15 chr3_random 6549413 6549478 -1878803 - L2 LINE L2 -4 3268 3201 * 965 320 82 16 chr3_random 6549453 6549881 -1878400 - L2 LINE L2 -1048 2266 1811 241 278 86 65 chr3_random 6550491 6550649 -1877632 + MIR SINE MIR 29 184 -68 1915 208 5 5 chr3_random 6551827 6552207 -1876074 + L1MB2 LINE L1 5483 5862 -309 1429 158 106 21 chr3_random 6552210 6552494 -1875787 + MSTD LTR MaLR 1 308 -88 303 153 34 0 chr3_random 6554110 6554169 -1874112 + L1MB2 LINE L1 6072 6132 -39 281 271 32 90 chr3_random 6554669 6554824 -1873457 + MIR SINE MIR 8 153 -109 22 35 0 0 chr3_random 6554966 6554995 -1873286 + AT_rich Low_complexity Low_complexity 1 29 0 203 261 0 0 chr3_random 6555353 6555399 -1872882 - MIR3 SINE MIR -6 202 157 526 148 0 131 chr3_random 6555550 6555672 -1872609 + MLT1B LTR MaLR 5 110 -280 617 214 0 0 chr3_random 6555685 6555797 -1872484 + FLAM_A SINE Alu 11 122 -20 901 168 5 56 chr3_random 6555824 6555907 -1872374 + MLT1B LTR MaLR 96 182 -208 1562 172 0 11 chr3_random 6555907 6556169 -1872112 + AluJb SINE Alu 40 298 -14 901 168 5 56 chr3_random 6556169 6556281 -1872000 + MLT1B LTR MaLR 182 281 -109 30320 113 17 19 chr3_random 6556381 6562646 -1865635 - L1PA7 LINE L1 -136 6333 8 410 285 122 18 chr3_random 6563420 6563641 -1864640 + L1M4 LINE L1 3805 4048 -2098 272 176 81 0 chr3_random 6563923 6563997 -1864284 + L1M4 LINE L1 4353 4432 -1714 26 50 0 0 chr3_random 6564009 6564049 -1864232 + AT_rich Low_complexity Low_complexity 1 40 0 6194 110 25 38 chr3_random 6564400 6565449 -1862832 - L1MA2 LINE L1 -4 6300 5266 297 167 0 0 chr3_random 6565452 6565506 -1862775 + (TG)n Simple_repeat Simple_repeat 1 54 0 246 188 19 0 chr3_random 6565506 6565590 -1862691 - L1MC4 LINE L1 -1340 6982 2006 * 263 311 0 0 chr3_random 6565539 6565629 -1862652 + L1MC4 LINE L1 6614 6703 -1339 246 343 0 0 chr3_random 6565617 6565716 -1862565 + L1MC4 LINE L1 6614 6712 -1330 * 8676 179 8 4 chr3_random 6565702 6567368 -1860913 - L1 LINE L1 -874 6691 5019 7534 133 77 10 chr3_random 6567376 6568669 -1859612 - L1 LINE L1 -4773 2792 1414 592 287 39 0 chr3_random 6568793 6568974 -1859307 + MIR SINE MIR 65 252 -10 369 143 0 0 chr3_random 6569075 6569131 -1859150 - MER94 DNA DNA -78 56 1 27 49 0 0 chr3_random 6569342 6569383 -1858898 + AT_rich Low_complexity Low_complexity 1 41 0 24 32 0 0 chr3_random 6569585 6569616 -1858665 + AT_rich Low_complexity Low_complexity 1 31 0 762 248 38 14 chr3_random 6570570 6570780 -1857501 + MLT1J2 LTR MaLR 1 215 -235 266 214 204 31 chr3_random 6570871 6570969 -1857312 + MLT1J2 LTR MaLR 336 450 0 1014 264 51 13 chr3_random 6571507 6571912 -1856369 - MER110 LTR ERV1 -15 476 15 259 153 111 42 chr3_random 6571912 6571984 -1856297 - MER110 LTR ERV1 -414 77 1 434 172 0 81 chr3_random 6572124 6572211 -1856070 + MLT1J2 LTR MaLR 247 326 -64 22 0 0 0 chr3_random 6572223 6572245 -1856036 + AT_rich Low_complexity Low_complexity 1 22 0 3256 284 57 75 chr3_random 6572570 6573049 -1855232 - MER110-int LTR ERV1 -631 4016 3530 1444 189 25 83 chr3_random 6573049 6573446 -1854835 - MLT1A2 LTR MaLR 0 374 1 3256 284 57 75 chr3_random 6573446 6574923 -1853358 - MER110-int LTR ERV1 -1117 3530 2096 989 214 89 5 chr3_random 6574925 6575149 -1853132 - MER110 LTR ERV1 -240 251 9 1479 154 0 4 chr3_random 6575152 6575385 -1852896 - AluSg/x SINE Alu 0 310 79 1192 78 6 6 chr3_random 6575410 6575589 -1852692 + (GGAA)n Simple_repeat Simple_repeat 1 179 0 180 0 0 0 chr3_random 6575589 6575609 -1852672 + (GGGA)n Simple_repeat Simple_repeat 1 20 0 450 0 0 0 chr3_random 6576185 6576235 -1852046 + (TA)n Simple_repeat Simple_repeat 1 50 0 3661 193 35 22 chr3_random 6577595 6578305 -1849976 - MER21B LTR ERV1 -11 852 134 1859 91 4 0 chr3_random 6578423 6578666 -1849615 - AluSg SINE Alu -65 245 2 22 56 0 0 chr3_random 6578877 6578913 -1849368 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr3_random 6579118 6579141 -1849140 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 261 197 0 0 chr3_random 6579967 6580028 -1848253 + (CA)n Simple_repeat Simple_repeat 1 61 0 219 358 65 24 chr3_random 6580555 6580678 -1847603 - L2 LINE L2 -9 3263 3136 413 335 48 28 chr3_random 6580869 6581120 -1847161 + MIR SINE MIR 7 262 0 22 0 0 0 chr3_random 6581132 6581154 -1847127 + AT_rich Low_complexity Low_complexity 1 22 0 1502 259 21 117 chr3_random 6581402 6581873 -1846408 - MSTB LTR MaLR 0 426 1 498 298 54 62 chr3_random 6581944 6582186 -1846095 - MER102a DNA MER1_type 0 330 91 198 0 0 0 chr3_random 6582355 6582377 -1845904 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 270 296 0 20 chr3_random 6582546 6582644 -1845637 + GA-rich Low_complexity Low_complexity 2 97 0 302 311 108 18 chr3_random 6582785 6583071 -1845210 + HAL1 LINE L1 1153 1464 -1043 294 215 90 28 chr3_random 6583464 6583641 -1844640 + L1M4 LINE L1 2110 2297 -3849 272 264 22 17 chr3_random 6583664 6583875 -1844406 + (TA)n Simple_repeat Simple_repeat 1 212 0 428 308 114 22 chr3_random 6583979 6584382 -1843899 + L1M4 LINE L1 2396 2835 -3311 255 157 0 39 chr3_random 6584566 6584617 -1843664 - MER5B DNA MER1_type -110 68 20 2259 144 12 10 chr3_random 6584626 6585245 -1843036 - L1P4 LINE L1 -567 5599 4984 1260 153 5 5 chr3_random 6585242 6585457 -1842824 + L1PA16 LINE L1 5546 5760 -406 * 1948 186 75 66 chr3_random 6585464 6585995 -1842286 + LTR10A LTR ERV1 13 548 -61 2197 185 5 10 chr3_random 6586006 6586422 -1841859 + L1PA16 LINE L1 5753 6166 0 265 345 60 0 chr3_random 6587567 6587651 -1840630 + L2 LINE L2 3150 3238 -34 370 320 88 74 chr3_random 6587938 6588369 -1839912 + MLT1L LTR MaLR 172 608 -7 335 241 85 28 chr3_random 6588727 6588868 -1839413 + MLT1L LTR MaLR 467 615 0 351 223 9 71 chr3_random 6588868 6588980 -1839301 + MIR SINE MIR 158 262 0 513 311 246 33 chr3_random 6589816 6590482 -1837799 - L2 LINE L2 -910 2404 1597 1047 317 33 27 chr3_random 6590538 6591048 -1837233 + L2 LINE L2 2777 3287 -26 1787 185 29 29 chr3_random 6591768 6592189 -1836092 + LTR52 LTR ERVL 1 421 0 227 357 162 8 chr3_random 6592207 6592448 -1835833 + L2 LINE L2 3032 3309 -4 448 134 0 12 chr3_random 6593216 6593298 -1834983 + LTR49 LTR ERV1 1 81 -514 533 105 0 23 chr3_random 6593401 6593487 -1834794 + LTR49 LTR ERV1 265 348 -247 * 730 179 81 54 chr3_random 6593469 6593692 -1834589 + LTR48 LTR ERV1 367 787 0 222 281 89 37 chr3_random 6594146 6594281 -1834000 + MIR SINE MIR 118 259 -3 728 270 87 69 chr3_random 6594477 6594866 -1833415 + MLT1H LTR MaLR 8 403 -146 25 31 0 0 chr3_random 6595248 6595280 -1833001 + AT_rich Low_complexity Low_complexity 1 32 0 197 349 71 8 chr3_random 6595319 6595445 -1832836 - L3b LINE CR1 -66 1517 1384 14576 193 28 14 chr3_random 6595487 6598023 -1830258 + L1M2 LINE L1 3 2503 -4345 1800 179 0 0 chr3_random 6598023 6598320 -1829961 + AluSx SINE Alu 1 297 -15 14576 193 28 14 chr3_random 6598320 6601513 -1826768 + L1M2 LINE L1 2503 5811 -1037 4220 154 73 31 chr3_random 6601623 6602587 -1825694 + L1MA4A LINE L1 4336 5258 -1045 512 76 13 0 chr3_random 6602587 6602666 -1825615 + L1PA6 LINE L1 6075 6154 0 4220 154 73 31 chr3_random 6602666 6602805 -1825476 + L1MA4A LINE L1 5258 5390 -913 1824 95 48 4 chr3_random 6602805 6603080 -1825201 + AluSc SINE Alu 21 306 0 4220 154 73 31 chr3_random 6603080 6603199 -1825082 + L1MA4A LINE L1 5390 5503 -800 1639 179 45 0 chr3_random 6603199 6603489 -1824792 + AluJb SINE Alu 1 303 -9 4220 154 73 31 chr3_random 6603489 6603930 -1824351 + L1MA4A LINE L1 5503 6079 -224 325 267 69 12 chr3_random 6604719 6604824 -1823457 + MIR3 SINE MIR 53 163 -45 370 256 17 83 chr3_random 6605769 6605949 -1822332 - L2 LINE L2 0 3313 3146 25 0 0 0 chr3_random 6606562 6606587 -1821694 + AT_rich Low_complexity Low_complexity 1 25 0 264 293 170 0 chr3_random 6606659 6606765 -1821516 - MIR3 SINE MIR -28 180 57 426 121 0 0 chr3_random 6607911 6607969 -1820312 + LTR8 LTR ERV1 634 691 0 228 161 0 149 chr3_random 6608026 6608113 -1820168 - Charlie5 DNA MER1_type 0 2618 2545 442 304 88 25 chr3_random 6608218 6608497 -1819784 + L2 LINE L2 2698 2989 -283 372 315 27 34 chr3_random 6608472 6608621 -1819660 - MIR SINE MIR -111 151 4 * 663 258 62 0 chr3_random 6608693 6608871 -1819410 - MIR SINE MIR -71 191 3 211 277 198 20 chr3_random 6609255 6609356 -1818925 - MIR SINE MIR -113 149 31 1451 249 60 60 chr3_random 6609381 6609932 -1818349 + MER68 LTR ERV1 3 553 -9 477 200 19 0 chr3_random 6611467 6611572 -1816709 - L1PA8 LINE L1 -4028 2118 2012 15369 116 16 2 chr3_random 6611579 6613951 -1814330 + L1PA8 LINE L1 2103 4508 -1638 2937 92 28 5 chr3_random 6613972 6614405 -1813876 + L1PA8 LINE L1 5730 6172 0 2450 68 0 3 chr3_random 6614853 6615163 -1813118 - AluY SINE Alu -2 309 1 26 0 0 0 chr3_random 6615164 6615190 -1813091 + AT_rich Low_complexity Low_complexity 1 26 0 254 197 152 15 chr3_random 6616575 6616641 -1811640 - MIR3 SINE MIR -9 199 125 217 402 17 0 chr3_random 6617737 6617854 -1810427 + L2 LINE L2 3192 3310 -3 1751 199 152 19 chr3_random 6618005 6618472 -1809809 + LTR64 LTR ERVK 23 551 -7 382 329 96 0 chr3_random 6618477 6618644 -1809637 - LTR67 LTR ERVL -71 486 304 1783 274 83 13 chr3_random 6619241 6619774 -1808507 + MLT1E LTR MaLR 1 570 -23 703 197 42 100 chr3_random 6619859 6620118 -1808163 - L1MC4 LINE L1 -2 8040 7797 1613 167 35 48 chr3_random 6620121 6620516 -1807765 + MER4A LTR ERV1 1 237 -228 582 97 250 16 chr3_random 6620546 6620670 -1807611 + MER4C LTR ERV1 295 447 -18 591 229 138 73 chr3_random 6620724 6620778 -1807503 - L1MC4 LINE L1 -292 7750 7701 1735 169 7 3 chr3_random 6620778 6621068 -1807213 - AluJb SINE Alu -21 291 1 591 229 138 73 chr3_random 6621068 6621340 -1806941 - L1MC4 LINE L1 -341 7701 7403 1475 213 54 12 chr3_random 6621342 6621959 -1806322 - L1ME LINE L1 -417 5747 5101 21 0 0 0 chr3_random 6622055 6622076 -1806205 + AT_rich Low_complexity Low_complexity 1 21 0 628 207 30 2 chr3_random 6622109 6622282 -1805999 + MER20 DNA MER1_type 1 218 -1 233 189 0 0 chr3_random 6622941 6622978 -1805303 + LTR48B LTR ERV1 4 40 -604 1389 204 71 26 chr3_random 6623010 6623464 -1804817 + LTR48 LTR ERV1 135 787 0 2162 93 3 17 chr3_random 6623694 6623983 -1804298 + AluSp SINE Alu 1 285 -28 189 94 0 0 chr3_random 6623983 6624015 -1804266 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 298 172 151 54 chr3_random 6624256 6624349 -1803932 - L2 LINE L2 -8 3305 3204 476 195 106 8 chr3_random 6624423 6624546 -1803735 + MER96B DNA MER1_type? 282 416 -1 235 232 29 29 chr3_random 6624724 6624793 -1803488 - L2 LINE L2 -12 3301 3233 726 349 89 25 chr3_random 6624868 6625542 -1802739 - L2 LINE L2 -92 3221 2493 441 259 272 6 chr3_random 6625536 6625698 -1802583 + MIR SINE MIR 54 258 -4 * 1020 306 82 18 chr3_random 6625720 6626161 -1802120 - L2 LINE L2 -833 2481 2013 21 57 0 0 chr3_random 6626622 6626657 -1801624 + AT_rich Low_complexity Low_complexity 1 35 0 2504 74 3 3 chr3_random 6626949 6627285 -1800996 + L1PA8 LINE L1 5836 6171 -1 327 297 111 61 chr3_random 6627675 6627986 -1800295 + L2 LINE L2 2721 3059 -213 314 284 113 64 chr3_random 6628126 6628217 -1800064 + MER5A DNA MER1_type 6 108 -81 3083 166 13 91 chr3_random 6628217 6628966 -1799315 + LTR8 LTR ERV1 1 691 0 314 284 113 64 chr3_random 6628966 6629015 -1799266 + MER5A DNA MER1_type 108 153 -36 923 173 29 112 chr3_random 6629018 6629365 -1798916 - MER33 DNA MER1_type -1 323 6 2240 186 38 26 chr3_random 6631136 6631640 -1796641 + LTR54 LTR ERV1 1 510 0 184 359 131 20 chr3_random 6631906 6632104 -1796177 - L2 LINE L2 -1367 1947 1728 2681 178 86 6 chr3_random 6632151 6632689 -1795592 + MER34C LTR ERV1 5 585 0 26 0 0 0 chr3_random 6632878 6632904 -1795377 + AT_rich Low_complexity Low_complexity 1 26 0 412 320 19 48 chr3_random 6632930 6633136 -1795145 + L1M4 LINE L1 2923 3122 -3024 186 43 0 0 chr3_random 6634108 6634131 -1794150 + (CA)n Simple_repeat Simple_repeat 1 23 0 281 269 97 0 chr3_random 6635404 6635497 -1792784 + MER5A DNA MER1_type 9 110 -79 1007 285 61 91 chr3_random 6635892 6637315 -1790966 - MER31-int LTR ERV1 -1870 3066 1686 461 206 38 23 chr3_random 6637455 6637586 -1790695 - MER31-int LTR ERV1 -3492 1444 1312 269 51 26 0 chr3_random 6637686 6637725 -1790556 + (CA)n Simple_repeat Simple_repeat 2 41 0 365 197 0 0 chr3_random 6637746 6637817 -1790464 - MER92C LTR ERV1 0 554 484 573 259 27 32 chr3_random 6637877 6638062 -1790219 - MER92C LTR ERV1 -370 184 1 614 215 121 36 chr3_random 6638731 6638954 -1789327 - LTR37A LTR ERV1 -181 245 4 698 262 19 23 chr3_random 6639003 6639217 -1789064 - MER31-int LTR ERV1 -816 5515 5303 2446 222 36 20 chr3_random 6639232 6639688 -1788593 - MER77 LTR ERV1 -38 567 99 1562 185 33 41 chr3_random 6639688 6640056 -1788225 - MLT1A1 LTR MaLR 0 365 1 2446 222 36 20 chr3_random 6640056 6640157 -1788124 - MER77 LTR ERV1 -506 99 1 1792 241 48 97 chr3_random 6640157 6640518 -1787763 - MER31-int LTR ERV1 -988 3948 3646 2348 133 8 3 chr3_random 6640518 6640880 -1787401 + THE1B LTR MaLR 1 364 0 1792 241 48 97 chr3_random 6640880 6641312 -1786969 - MER31-int LTR ERV1 -1290 3646 3194 599 150 93 7 chr3_random 6641416 6641556 -1786725 - MER31-int LTR ERV1 -3638 1298 1147 321 111 0 95 chr3_random 6642116 6642179 -1786102 - MER92C LTR ERV1 0 554 498 415 278 61 50 chr3_random 6642290 6642409 -1785872 - MER92C LTR ERV1 -370 184 61 1531 201 3 19 chr3_random 6642409 6642595 -1785686 - AluJb SINE Alu -4 308 127 261 0 0 0 chr3_random 6642595 6642624 -1785657 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1531 201 3 19 chr3_random 6642624 6642750 -1785531 - AluJb SINE Alu -184 128 1 415 278 61 50 chr3_random 6642750 6642810 -1785471 - MER92C LTR ERV1 -493 61 3 27 0 0 0 chr3_random 6644284 6644311 -1783970 + AT_rich Low_complexity Low_complexity 1 27 0 401 306 154 12 chr3_random 6644456 6644651 -1783630 - MIR SINE MIR -31 231 12 788 305 94 61 chr3_random 6646833 6647050 -1781231 + L2 LINE L2 2160 2368 -945 294 87 0 0 chr3_random 6647050 6647096 -1781185 + (CA)n Simple_repeat Simple_repeat 2 47 0 788 305 94 61 chr3_random 6647096 6647784 -1780497 + L2 LINE L2 2368 3068 -245 1563 216 37 12 chr3_random 6647826 6648173 -1780108 + MLT2B1 LTR ERVL 6 372 -42 396 0 0 0 chr3_random 6648173 6648217 -1780064 + (TG)n Simple_repeat Simple_repeat 2 45 0 1563 216 37 12 chr3_random 6648217 6648253 -1780028 + MLT2B1 LTR ERVL 372 406 -8 351 304 23 65 chr3_random 6648256 6648473 -1779808 + L2 LINE L2 3106 3313 0 1984 125 25 0 chr3_random 6649288 6649569 -1778712 + AluSx SINE Alu 11 298 -14 1265 229 17 54 chr3_random 6649949 6650359 -1777922 + MLT2C1 LTR ERVL 3 397 0 2706 246 45 109 chr3_random 6650359 6650806 -1777475 + MLT1D-int LTR MaLR 1 475 -896 213 0 81 0 chr3_random 6650806 6650843 -1777438 + T-rich Low_complexity Low_complexity 2 41 0 2706 246 45 109 chr3_random 6650843 6651860 -1776421 + MLT1D-int LTR MaLR 475 1371 0 2361 161 26 12 chr3_random 6651894 6652316 -1775965 + MSTA LTR MaLR 1 428 0 2181 114 25 28 chr3_random 6652323 6652684 -1775597 - THE1C LTR MaLR -15 360 1 9919 122 23 33 chr3_random 6652684 6654280 -1774001 - THE1C-int LTR MaLR 0 1580 1 620 98 0 0 chr3_random 6654288 6654370 -1773911 - THE1C LTR MaLR 0 428 347 2170 198 14 49 chr3_random 6654375 6654865 -1773416 + MLT1D LTR MaLR 31 503 -2 580 268 44 24 chr3_random 6655269 6655474 -1772807 + MER63A DNA MER1_type 2 210 0 28 0 0 0 chr3_random 6655578 6655606 -1772675 + AT_rich Low_complexity Low_complexity 1 28 0 244 281 79 0 chr3_random 6655650 6655739 -1772542 - MIR SINE MIR -3 259 164 340 201 22 82 chr3_random 6657654 6657718 -1770563 - L1MC4 LINE L1 -17 8025 7972 649 204 93 49 chr3_random 6657718 6657944 -1770337 - MER106A DNA MER1_type 0 236 1 340 201 22 82 chr3_random 6657944 6658013 -1770268 - L1MC4 LINE L1 -70 7972 7900 211 188 0 42 chr3_random 6658013 6658061 -1770220 + (CATATA)n Simple_repeat Simple_repeat 6 51 0 23 33 0 0 chr3_random 6658706 6658736 -1769545 + AT_rich Low_complexity Low_complexity 1 30 0 650 246 121 10 chr3_random 6658826 6659025 -1769256 - MER58A DNA MER1_type 0 224 4 224 165 25 89 chr3_random 6659306 6659385 -1768896 + (TATATG)n Simple_repeat Simple_repeat 3 76 0 341 75 19 0 chr3_random 6659394 6659447 -1768834 + (TA)n Simple_repeat Simple_repeat 2 55 0 369 326 83 33 chr3_random 6659554 6659735 -1768546 + L1ME LINE L1 5415 5604 -517 2083 164 22 5 chr3_random 6660133 6660535 -1767746 + L1 LINE L1 4874 5282 -864 2800 70 0 10 chr3_random 6860549 6860932 -1567349 + LTR7 LTR ERV1 70 448 -2 5974 74 10 155 chr3_random 6860934 6862152 -1566129 + HERVH LTR ERV1 1 1041 -6672 2254 81 7 19 chr3_random 6862336 6862644 -1565637 + AluSg SINE Alu 1 304 -6 253 188 0 0 chr3_random 6862672 6862720 -1565561 - Charlie1 DNA MER1_type -2 2759 2712 2901 149 74 10 chr3_random 6862735 6863283 -1564998 + MER34C LTR ERV1 1 585 0 232 282 0 0 chr3_random 6863333 6863404 -1564877 - Charlie1 DNA MER1_type -59 2702 2632 2806 123 23 5 chr3_random 6863404 6863842 -1564439 - HERVH LTR ERV1 -3768 3945 3500 788 159 41 0 chr3_random 6863841 6863986 -1564295 - HERVH LTR ERV1 -4423 3290 3140 * 9094 98 7 16 chr3_random 6863980 6865798 -1562483 - HERVH LTR ERV1 -4726 2987 1108 598 307 17 84 chr3_random 6866415 6866891 -1561390 + L1MEd LINE L1 20 463 -5656 3181 175 21 45 chr3_random 6867037 6867718 -1560563 + MER39 LTR ERV1 2 707 0 26 0 0 0 chr3_random 6868323 6868349 -1559932 + AT_rich Low_complexity Low_complexity 1 26 0 2132 95 52 3 chr3_random 6868354 6868680 -1559601 + L1MA3 LINE L1 5564 5905 -400 1188 209 4 20 chr3_random 6868680 6868924 -1559357 - AluJo SINE Alu -15 297 58 500 265 13 7 chr3_random 6868942 6869093 -1559188 + L1MEd LINE L1 972 1123 -4996 21 36 0 0 chr3_random 6869795 6869823 -1558458 + AT_rich Low_complexity Low_complexity 1 28 0 232 363 0 33 chr3_random 6870059 6870150 -1558131 + MIR SINE MIR 25 112 -96 200 235 59 0 chr3_random 6870217 6870268 -1558013 + MIR SINE MIR 172 225 -37 1936 159 96 23 chr3_random 6870611 6871006 -1557275 + MSTA LTR MaLR 1 424 -4 1099 197 83 17 chr3_random 6871024 6871465 -1556816 - LTR48 LTR ERV1 -11 776 250 2153 118 3 3 chr3_random 6871492 6871796 -1556485 + AluSq SINE Alu 1 304 -9 1447 185 124 20 chr3_random 6871802 6872158 -1556123 - MSTA LTR MaLR -35 393 1 655 281 18 0 chr3_random 6872264 6872435 -1555846 + MIR SINE MIR 87 260 -2 234 342 108 0 chr3_random 6872461 6872581 -1555700 + MIR SINE MIR 129 261 -1 911 188 75 43 chr3_random 6872755 6873087 -1555194 - LTR37B LTR ERV1 -6 462 111 398 152 98 33 chr3_random 6873419 6873511 -1554770 - L1MA10 LINE L1 -28 6306 6209 5089 200 32 1 chr3_random 6873528 6874883 -1553398 - L1MC1 LINE L1 -146 6467 5078 * 6823 161 65 18 chr3_random 6874876 6876185 -1552096 - L1MC1 LINE L1 -5030 1396 27 22 56 0 0 chr3_random 6876637 6876673 -1551608 + AT_rich Low_complexity Low_complexity 1 36 0 1375 214 79 9 chr3_random 6879494 6879835 -1548446 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr3_random 6879864 6879894 -1548387 + AT_rich Low_complexity Low_complexity 1 30 0 528 274 113 41 chr3_random 6880740 6881032 -1547249 + Charlie2b DNA MER1_type 2 314 -2468 317 237 10 72 chr3_random 6881037 6881134 -1547147 + Charlie2b DNA MER1_type 566 656 -2126 180 245 0 0 chr3_random 6881146 6881199 -1547082 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 225 65 0 0 chr3_random 6881859 6881890 -1546391 + (CA)n Simple_repeat Simple_repeat 2 32 0 361 301 65 49 chr3_random 6882129 6882375 -1545906 - L1M4 LINE L1 -2210 3936 3687 183 213 43 0 chr3_random 6882383 6882430 -1545851 + L2 LINE L2 3263 3311 -2 350 275 75 33 chr3_random 6882541 6882661 -1545620 - L2 LINE L2 0 3272 3148 373 339 95 5 chr3_random 6882927 6883116 -1545165 + L3b LINE CR1 1115 1320 -263 24 32 0 0 chr3_random 6883338 6883369 -1544912 + AT_rich Low_complexity Low_complexity 1 31 0 330 226 81 32 chr3_random 6883461 6883585 -1544696 - MER94 DNA DNA 0 134 5 291 371 71 0 chr3_random 6884545 6884685 -1543596 - L2 LINE L2 -1 3271 3122 324 278 0 41 chr3_random 6884694 6884791 -1543490 + MER82 DNA MER2_type 2 94 -559 192 316 53 0 chr3_random 6884795 6884852 -1543429 + L2 LINE L2 3251 3310 -3 185 320 67 13 chr3_random 6886648 6886723 -1541558 + L2 LINE L2 3125 3203 -69 889 156 63 63 chr3_random 6887506 6887711 -1540570 + MER3 DNA MER1_type 5 209 0 239 149 60 45 chr3_random 6889209 6889276 -1539005 - L1MC4 LINE L1 -1 8041 7974 2938 190 81 129 chr3_random 6889276 6890246 -1538035 + MER21A LTR ERV1 1 924 -7 2495 237 55 56 chr3_random 6890254 6891204 -1537077 - L1MC4a LINE L1 -65 7743 6795 25 75 0 0 chr3_random 6891401 6891454 -1536827 + AT_rich Low_complexity Low_complexity 1 53 0 336 143 0 0 chr3_random 6892927 6892983 -1535298 + (A)n Simple_repeat Simple_repeat 1 56 0 538 204 88 0 chr3_random 6893550 6893663 -1534618 - AluJb SINE Alu -187 125 3 2454 64 7 0 chr3_random 6894031 6894327 -1533954 - AluY SINE Alu -13 298 1 1148 256 73 32 chr3_random 6894684 6894967 -1533314 + MER34B LTR ERV1 1 271 -271 1641 137 30 4 chr3_random 6894967 6895237 -1533044 - AluSx SINE Alu -35 277 1 1148 256 73 32 chr3_random 6895237 6895474 -1532807 + MER34B LTR ERV1 271 542 0 192 291 36 18 chr3_random 6895555 6895610 -1532671 + MIR SINE MIR 31 86 -176 282 29 0 0 chr3_random 6895619 6895654 -1532627 + (CA)n Simple_repeat Simple_repeat 2 36 0 6039 68 5 8 chr3_random 6896894 6897676 -1530605 - LTR17 LTR ERV1 0 780 1 5039 121 15 20 chr3_random 6898696 6899357 -1528924 - MER4E LTR ERV1 0 779 121 2161 105 99 0 chr3_random 6899357 6899700 -1528581 + MER51B LTR ERV1 1 377 0 5039 121 15 20 chr3_random 6899700 6899821 -1528460 - MER4E LTR ERV1 -658 121 1 215 61 30 0 chr3_random 6902630 6902663 -1525618 + (CA)n Simple_repeat Simple_repeat 2 35 0 1073 261 48 73 chr3_random 6903313 6903499 -1524782 - MER39 LTR ERV1 0 707 518 222 62 0 0 chr3_random 6903499 6903531 -1524750 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1073 261 48 73 chr3_random 6903531 6903807 -1524474 - MER39 LTR ERV1 -189 518 257 284 222 62 12 chr3_random 6903791 6903872 -1524409 - LTR29 LTR ERV1 -537 85 1 * 22 0 0 0 chr3_random 6904133 6904155 -1524126 + AT_rich Low_complexity Low_complexity 1 22 0 430 160 11 11 chr3_random 6904158 6904252 -1524029 + CT-rich Low_complexity Low_complexity 3 96 0 1031 245 110 67 chr3_random 6904921 6905538 -1522743 + LTR48B LTR ERV1 1 644 0 22 0 0 0 chr3_random 6905674 6905696 -1522585 + AT_rich Low_complexity Low_complexity 1 22 0 1327 132 32 9 chr3_random 6905866 6906061 -1522220 + MER39B LTR ERV1 3 202 -451 4927 113 33 12 chr3_random 6906061 6906816 -1521465 + MER4E LTR ERV1 1 771 -8 2283 171 26 0 chr3_random 6906822 6907213 -1521068 + MER39B LTR ERV1 200 600 -53 2425 56 3 10 chr3_random 6907213 6907518 -1520763 - AluY SINE Alu -8 303 1 232 35 0 0 chr3_random 6907624 6907653 -1520628 - LTR7 LTR ERV1 -421 29 1 212 254 15 45 chr3_random 6908928 6908995 -1519286 - MIR3 SINE MIR -12 196 132 1316 203 89 76 chr3_random 6909012 6909253 -1519028 + MER34C LTR ERV1 42 278 -307 2501 67 0 6 chr3_random 6909253 6909566 -1518715 + AluY SINE Alu 1 311 0 1316 203 89 76 chr3_random 6909566 6909861 -1518420 + MER34C LTR ERV1 278 585 0 192 214 225 11 chr3_random 6909976 6910065 -1518216 + MIR SINE MIR 155 262 0 1539 201 89 76 chr3_random 6910271 6910809 -1517472 - MER34C LTR ERV1 -6 579 35 324 0 0 0 chr3_random 6910871 6910907 -1517374 + (CA)n Simple_repeat Simple_repeat 1 36 0 218 179 0 0 chr3_random 6911313 6911352 -1516929 - MIR SINE MIR -64 198 160 452 260 85 67 chr3_random 6911354 6911577 -1516704 - MIR SINE MIR 0 262 36 2120 164 8 16 chr3_random 6911623 6912001 -1516280 - THE1C LTR MaLR 0 375 1 216 359 0 0 chr3_random 6912024 6912088 -1516193 + L2 LINE L2 3248 3311 -2 214 319 132 47 chr3_random 6912099 6912334 -1515947 + MIR SINE MIR 8 262 0 427 235 75 75 chr3_random 6912361 6912644 -1515637 + MER34 LTR ERV1 8 440 -267 22 0 0 0 chr3_random 6912799 6912821 -1515460 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3_random 6913466 6913488 -1514793 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3_random 6914478 6914508 -1513773 + AT_rich Low_complexity Low_complexity 1 30 0 2479 138 3 3 chr3_random 6914541 6914902 -1513379 + THE1B LTR MaLR 3 363 -1 266 364 45 0 chr3_random 6915836 6915968 -1512313 + MIR SINE MIR 117 254 -8 768 173 0 8 chr3_random 6916074 6916201 -1512080 - FLAM_C SINE Alu -7 126 1 279 54 0 0 chr3_random 6918163 6918200 -1510081 + (CA)n Simple_repeat Simple_repeat 2 38 0 1730 180 7 0 chr3_random 6918608 6918897 -1509384 - AluSx SINE Alu -16 296 6 723 144 0 0 chr3_random 6919383 6919487 -1508794 - AluJb SINE Alu -14 298 195 186 43 0 0 chr3_random 6920301 6920324 -1507957 + (TTTTC)n Simple_repeat Simple_repeat 1 23 0 434 158 41 27 chr3_random 6920324 6920470 -1507811 + CT-rich Low_complexity Low_complexity 2 149 0 915 96 22 22 chr3_random 6920470 6920648 -1507633 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 1449 199 4 4 chr3_random 6920648 6920920 -1507361 - AluJo SINE Alu -40 272 1 359 214 101 0 chr3_random 6921445 6921534 -1506747 + MIR SINE MIR 163 260 -2 198 0 0 0 chr3_random 6922135 6922157 -1506124 + (CAATT)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr3_random 6922584 6922617 -1505664 + AT_rich Low_complexity Low_complexity 1 33 0 2265 137 116 11 chr3_random 6923572 6923952 -1504329 - MSTA LTR MaLR -5 423 4 8307 194 26 15 chr3_random 6923955 6925588 -1502693 - MSTA-int LTR MaLR 0 1651 1 2108 143 117 10 chr3_random 6925590 6925975 -1502306 - MSTA LTR MaLR -2 426 1 532 277 122 0 chr3_random 6926032 6926180 -1502101 + MIR SINE MIR 5 170 -92 200 262 82 0 chr3_random 6926267 6926328 -1501953 - L2 LINE L2 -87 3226 3161 1430 172 0 4 chr3_random 6926328 6926566 -1501715 - Tigger3(Golem) DNA MER2_type 0 3038 2802 543 179 75 0 chr3_random 6926572 6926678 -1501603 - Tigger3(Golem) DNA MER2_type -2887 142 29 218 194 0 0 chr3_random 6927425 6927461 -1500820 + (TATG)n Simple_repeat Simple_repeat 4 39 0 1427 197 94 7 chr3_random 6930094 6930403 -1497878 - MLT1A1 LTR MaLR 0 365 30 23 0 0 0 chr3_random 6931591 6931614 -1496667 + AT_rich Low_complexity Low_complexity 1 23 0 251 93 23 0 chr3_random 6933176 6933219 -1495062 + (TAA)n Simple_repeat Simple_repeat 1 44 0 324 301 8 49 chr3_random 6933226 6933349 -1494932 - MIR SINE MIR -18 244 127 1012 223 55 102 chr3_random 6933353 6933922 -1494359 + MER39 LTR ERV1 1 705 -2 882 197 47 21 chr3_random 6934153 6934346 -1493935 + MER20 DNA MER1_type 19 216 -3 394 155 12 71 chr3_random 6934360 6934444 -1493837 - MER45 DNA AcHobo 0 1581 1503 423 119 15 0 chr3_random 6934478 6934545 -1493736 - AluSc SINE Alu -18 291 224 294 114 0 2 chr3_random 6934552 6934692 -1493589 - AluSp SINE Alu -131 172 1 962 237 5 15 chr3_random 6934884 6935082 -1493199 - MER45C DNA AcHobo -757 196 1 1166 249 158 38 chr3_random 6935738 6936394 -1491887 - LTR1B LTR ERV1 -40 980 34 1335 273 114 27 chr3_random 6936402 6936882 -1491399 + MLT1D LTR MaLR 1 505 0 401 323 0 8 chr3_random 6936923 6937047 -1491234 - MIR3 SINE MIR -8 200 78 2883 175 18 62 chr3_random 6938570 6938952 -1489329 + MER6A DNA MER2_type 2 347 -518 2059 147 33 30 chr3_random 6938952 6939313 -1488968 + THE1B LTR MaLR 1 362 -2 2883 175 18 62 chr3_random 6939313 6939559 -1488722 + MER6A DNA MER2_type 347 602 -3 337 313 106 6 chr3_random 6939997 6940157 -1488124 - MIR SINE MIR -82 180 5 209 222 0 0 chr3_random 6940247 6940292 -1487989 + A-rich Low_complexity Low_complexity 1 45 0 1549 191 71 3 chr3_random 6940697 6941022 -1487259 - MER7A DNA MER2_type -1 345 1 226 396 50 0 chr3_random 6941026 6941127 -1487154 + L2 LINE L2 3158 3263 -9 1140 269 128 44 chr3_random 6941561 6942036 -1486245 - MLT2B1 LTR ERVL -5 515 1 200 342 0 61 chr3_random 6942749 6942863 -1485418 - MIR3 SINE MIR -54 154 48 198 324 127 0 chr3_random 6943161 6943232 -1485049 + MIR SINE MIR 3 82 -180 555 314 49 33 chr3_random 6944238 6944483 -1483798 + MIR SINE MIR 12 260 -2 25 51 0 0 chr3_random 6944860 6944899 -1483382 + AT_rich Low_complexity Low_complexity 1 39 0 269 186 20 29 chr3_random 6945342 6945444 -1482837 + CT-rich Low_complexity Low_complexity 1 101 0 788 238 104 110 chr3_random 6945790 6946155 -1482126 + MLT1A1 LTR MaLR 3 365 0 409 331 78 5 chr3_random 6946560 6946759 -1481522 - MIR SINE MIR -14 248 38 7994 169 14 22 chr3_random 6947332 6948933 -1479348 - L1P3 LINE L1 -3579 2882 1242 231 88 0 0 chr3_random 6948933 6948967 -1479314 + (TTG)n Simple_repeat Simple_repeat 2 35 0 7994 169 14 22 chr3_random 6948967 6950198 -1478083 - L1P3 LINE L1 -5219 1242 3 420 283 108 18 chr3_random 6951129 6951255 -1477026 - MER5A DNA MER1_type -6 183 37 487 81 0 47 chr3_random 6951255 6951341 -1476940 - L1MA1 LINE L1 0 6302 6221 420 283 108 18 chr3_random 6951341 6951380 -1476901 - MER5A DNA MER1_type -152 37 3 996 137 0 0 chr3_random 6952284 6952423 -1475858 + AluSg/x SINE Alu 144 282 -30 608 332 31 22 chr3_random 6952517 6952746 -1475535 + L2 LINE L2 2840 3070 -243 1657 292 81 34 chr3_random 6952782 6953525 -1474756 + HERVL40 LTR ERVL 581 1358 -4172 310 306 48 32 chr3_random 6953646 6953770 -1474511 + HERVL40 LTR ERVL 1572 1697 -3833 457 276 18 31 chr3_random 6954134 6954297 -1473984 - MLT1K LTR MaLR -7 581 421 23 33 0 0 chr3_random 6955060 6955090 -1473191 + AT_rich Low_complexity Low_complexity 1 30 0 273 373 33 7 chr3_random 6957571 6957721 -1470560 + L2 LINE L2 2377 2530 -784 485 315 78 47 chr3_random 6957722 6957900 -1470381 - LTR33 LTR ERVL -8 513 342 1573 192 33 19 chr3_random 6957900 6958260 -1470021 - MLT1A1 LTR MaLR 0 365 1 485 315 78 47 chr3_random 6958260 6958570 -1469711 - LTR33 LTR ERVL -179 342 10 252 387 18 24 chr3_random 6959189 6959357 -1468924 - MIR3 SINE MIR -11 197 31 181 57 57 0 chr3_random 6960058 6960093 -1468188 + T-rich Low_complexity Low_complexity 2 38 0 615 214 0 0 chr3_random 6960095 6960212 -1468069 - AluJb SINE Alu -195 117 1 692 219 0 32 chr3_random 6960281 6960436 -1467845 - L1MC1 LINE L1 -9 6324 6175 248 379 48 0 chr3_random 6960551 6960654 -1467627 - L2 LINE L2 -5 3267 3160 344 316 133 19 chr3_random 6960705 6960961 -1467320 - L2 LINE L2 0 3313 3029 201 355 94 35 chr3_random 6961040 6961434 -1466847 - L2 LINE L2 -431 2883 2467 257 305 78 64 chr3_random 6963783 6964127 -1464154 - L2 LINE L2 -973 2341 1993 1228 277 59 11 chr3_random 6964134 6964574 -1463707 - LTR40c LTR ERVL -4 461 1 313 255 31 10 chr3_random 6965495 6965593 -1462688 + MLT2C1 LTR ERVL 44 143 -254 * 1556 242 20 97 chr3_random 6965535 6966048 -1462233 + MLT1E2 LTR MaLR 82 546 -80 1818 137 0 0 chr3_random 6966048 6966311 -1461970 + AluSx SINE Alu 50 312 0 1556 242 20 97 chr3_random 6966311 6966387 -1461894 + MLT1E2 LTR MaLR 546 626 0 687 279 71 17 chr3_random 6966388 6966685 -1461596 - L1MC1 LINE L1 -1863 5945 5633 428 337 11 34 chr3_random 6966844 6967022 -1461259 + L2 LINE L2 2869 3042 -230 306 0 0 0 chr3_random 6970297 6970331 -1457950 + (TG)n Simple_repeat Simple_repeat 2 35 0 1960 175 0 0 chr3_random 6970692 6971001 -1457280 - AluJb SINE Alu -1 311 3 2983 170 103 0 chr3_random 6971119 6971689 -1456592 - Tigger1 DNA MER2_type -1789 629 1 242 325 45 7 chr3_random 6971853 6972007 -1456274 + L2 LINE L2 1488 1647 -1667 423 349 91 22 chr3_random 6972941 6973173 -1455108 + L2 LINE L2 3020 3267 -5 1479 115 134 22 chr3_random 6975241 6975510 -1452771 + AluSg1 SINE Alu 6 304 -5 185 250 78 0 chr3_random 6975926 6975990 -1452291 - L2 LINE L2 0 3313 3245 351 96 0 0 chr3_random 6976395 6976447 -1451834 + (TG)n Simple_repeat Simple_repeat 1 52 0 21 57 0 0 chr3_random 6977136 6977171 -1451110 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr3_random 6977608 6977650 -1450631 + (CA)n Simple_repeat Simple_repeat 2 43 0 2356 87 13 0 chr3_random 6977716 6978014 -1450267 - AluSx SINE Alu -9 303 2 207 0 0 0 chr3_random 6978384 6978407 -1449874 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2421 147 3 3 chr3_random 6978466 6978841 -1449440 - THE1C LTR MaLR 0 375 1 9378 127 35 42 chr3_random 6978843 6980431 -1447850 - THE1C-int LTR MaLR -2 1578 1 2834 97 0 0 chr3_random 6980431 6980804 -1447477 - THE1C LTR MaLR 0 375 3 2107 132 48 28 chr3_random 6980951 6981308 -1446973 + THE1B LTR MaLR 1 364 0 11189 102 20 0 chr3_random 6981308 6982857 -1445424 + THE1B-int LTR MaLR 1 1580 0 1840 147 69 29 chr3_random 6982859 6983207 -1445074 + THE1B LTR MaLR 3 364 0 208 228 13 13 chr3_random 6983306 6983385 -1444896 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 32 67 0 0 chr3_random 6987449 6987509 -1440772 + AT_rich Low_complexity Low_complexity 1 60 0 312 218 35 23 chr3_random 6987566 6987653 -1440628 - MER5A DNA MER1_type 0 189 102 1025 185 173 46 chr3_random 6988057 6988381 -1439900 - MLT1A1 LTR MaLR 0 365 1 1501 199 111 19 chr3_random 6988444 6988805 -1439476 + MSTD LTR MaLR 1 394 -2 231 230 14 68 chr3_random 6988808 6988882 -1439399 - L2 LINE L2 -2 3311 3242 397 300 171 32 chr3_random 6989834 6990114 -1438167 - L2 LINE L2 -830 2484 2166 428 351 55 57 chr3_random 6990178 6990628 -1437653 - L2 LINE L2 -229 3043 2587 444 153 51 42 chr3_random 6990688 6990806 -1437475 + MER96B DNA MER1_type? 217 335 -82 1781 174 3 10 chr3_random 6991969 6992268 -1436013 + AluJb SINE Alu 2 298 -14 523 266 46 83 chr3_random 6992298 6992516 -1435765 - MIR SINE MIR -51 211 2 1504 134 22 22 chr3_random 6993068 6993336 -1434945 - Tigger2a DNA MER2_type -3 441 174 3425 237 95 26 chr3_random 6993336 6994065 -1434216 + MER4E LTR ERV1 1 779 0 775 207 0 35 chr3_random 6994065 6994238 -1434043 - Tigger2a DNA MER2_type -267 167 1 1147 306 50 61 chr3_random 6995774 6996195 -1432086 - L2 LINE L2 -929 2385 1961 2243 105 3 0 chr3_random 6996195 6996491 -1431790 + AluSp SINE Alu 1 297 -16 381 58 43 0 chr3_random 6996492 6996561 -1431720 + (TA)n Simple_repeat Simple_repeat 1 72 0 1147 306 50 61 chr3_random 6996561 6996774 -1431507 - L2 LINE L2 -1352 1962 1756 888 261 25 21 chr3_random 6996783 6997024 -1431257 - MIR SINE MIR -4 258 17 543 147 11 11 chr3_random 6997756 6997851 -1430430 + MIR SINE MIR 70 164 -98 408 99 0 0 chr3_random 6998332 6998403 -1429878 + (TATG)n Simple_repeat Simple_repeat 2 72 0 1791 143 3 31 chr3_random 6998403 6998697 -1429584 - AluSx SINE Alu -26 286 1 218 290 43 0 chr3_random 6999669 6999738 -1428543 - MIR SINE MIR -24 238 167 221 316 125 18 chr3_random 6999816 6999984 -1428297 - L2 LINE L2 -23 3290 3105 1822 136 19 36 chr3_random 7001205 7001514 -1426767 - AluSx SINE Alu -8 304 1 1467 181 19 52 chr3_random 7002046 7002166 -1426115 + AluJb SINE Alu 5 127 -185 2170 113 0 16 chr3_random 7002166 7002475 -1425806 - AluSg SINE Alu -4 306 3 1467 181 19 52 chr3_random 7002475 7002664 -1425617 + AluJb SINE Alu 127 304 -8 495 101 38 0 chr3_random 7002922 7003001 -1425280 - Alu SINE Alu -9 301 220 389 361 0 0 chr3_random 7003122 7003241 -1425040 - L2 LINE L2 0 3272 3154 216 0 0 0 chr3_random 7003257 7003281 -1425000 + (CA)n Simple_repeat Simple_repeat 2 25 0 1227 249 79 49 chr3_random 7003814 7004243 -1424038 + MLT2B1 LTR ERVL 1 442 -78 5237 280 48 23 chr3_random 7004251 7005862 -1422419 + HERVL-B1-B1 LTR ERVL 1 1661 -3993 1950 168 3 0 chr3_random 7005862 7006172 -1422109 + AluSx SINE Alu 1 311 -1 5237 280 48 23 chr3_random 7006172 7006314 -1421967 + HERVL-B1-B1 LTR ERVL 1661 1798 -3856 1339 144 0 116 chr3_random 7006315 7006599 -1421682 + AluYb8 SINE Alu 1 251 -67 20641 194 22 17 chr3_random 7006606 7009124 -1419157 + HERVL-B1-B1 LTR ERVL 1829 4333 -1431 1645 178 49 7 chr3_random 7009124 7009410 -1418871 - AluJb SINE Alu -14 298 1 20641 194 22 17 chr3_random 7009410 7010425 -1417856 + HERVL-B1-B1 LTR ERVL 4333 5386 -378 2404 99 0 0 chr3_random 7010425 7010728 -1417553 - AluSg SINE Alu -7 303 1 20641 194 22 17 chr3_random 7010728 7011102 -1417179 + HERVL-B1-B1 LTR ERVL 5386 5757 -7 1434 235 65 44 chr3_random 7011102 7011532 -1416749 + MLT2B1 LTR ERVL 1 439 -81 333 0 0 0 chr3_random 7011724 7011761 -1416520 + (TA)n Simple_repeat Simple_repeat 2 38 0 1543 222 37 11 chr3_random 7011878 7012230 -1416051 - MLT1A1 LTR MaLR -4 361 1 200 375 44 83 chr3_random 7012996 7013200 -1415081 - L2 LINE L2 -561 2753 2543 189 0 0 0 chr3_random 7013200 7013221 -1415060 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 200 375 44 83 chr3_random 7013221 7013608 -1414673 - L2 LINE L2 -771 2543 2185 216 315 135 0 chr3_random 7013661 7013772 -1414509 - L2 LINE L2 -1390 1924 1799 185 319 0 0 chr3_random 7013805 7013852 -1414429 - MER5B DNA MER1_type -60 118 72 2115 195 114 53 chr3_random 7013856 7014590 -1413691 + LTR1B LTR ERV1 1 979 -41 275 243 14 14 chr3_random 7014621 7014691 -1413590 - MER5B DNA MER1_type -108 70 1 2461 57 3 3 chr3_random 7014697 7014994 -1413287 - AluY SINE Alu -14 297 1 212 171 0 0 chr3_random 7015061 7015102 -1413179 + (TTA)n Simple_repeat Simple_repeat 2 42 0 707 158 8 38 chr3_random 7015502 7015635 -1412646 - FLAM_C SINE Alu -14 129 1 2681 159 94 11 chr3_random 7015671 7016192 -1412089 + MER34B LTR ERV1 2 565 0 218 175 0 0 chr3_random 7016629 7016669 -1411612 + (TTG)n Simple_repeat Simple_repeat 2 41 0 379 146 51 51 chr3_random 7017560 7017738 -1410543 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 31 0 0 0 chr3_random 7017745 7017776 -1410505 + AT_rich Low_complexity Low_complexity 1 31 0 276 77 0 0 chr3_random 7018681 7018720 -1409561 + (GA)n Simple_repeat Simple_repeat 2 40 0 518 299 69 55 chr3_random 7018977 7019268 -1409013 - MLT1K LTR MaLR -142 446 152 2278 161 49 12 chr3_random 7019580 7019991 -1408290 - MSTB LTR MaLR 0 426 1 204 379 0 11 chr3_random 7020040 7020135 -1408146 - L2 LINE L2 -216 3056 2963 284 0 0 27 chr3_random 7020437 7020474 -1407807 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2231 93 0 0 chr3_random 7020477 7020755 -1407526 - AluSc SINE Alu -31 278 1 369 93 0 0 chr3_random 7021509 7021563 -1406718 + (GGA)n Simple_repeat Simple_repeat 3 56 0 21 71 0 0 chr3_random 7021577 7021619 -1406662 + AT_rich Low_complexity Low_complexity 1 42 0 1162 206 54 7 chr3_random 7021979 7022295 -1405986 - MLT1A1 LTR MaLR 0 365 1 247 215 0 62 chr3_random 7022967 7023032 -1405249 - L2 LINE L2 -3 3310 3250 9854 221 34 23 chr3_random 7023167 7025737 -1402544 + L1M2b LINE L1 179 2719 -4489 3828 56 21 2 chr3_random 7025737 7026218 -1402063 - LTR2B LTR ERV1 0 490 1 9854 221 34 23 chr3_random 7026218 7028867 -1399414 + L1M2b LINE L1 2719 5435 -1773 3960 124 114 127 chr3_random 7078890 7080312 -1347969 - pTR5 LTR ERV1 0 2438 743 1449 106 60 5 chr3_random 7080316 7080534 -1347747 + MLT2A1 LTR ERVL 208 437 -7 240 186 0 0 chr3_random 7080577 7080620 -1347661 - MIR SINE MIR -10 252 210 234 234 47 0 chr3_random 7081322 7081386 -1346895 + MLT1L LTR MaLR 438 504 -111 1344 231 58 29 chr3_random 7081474 7081851 -1346430 + MLT1D LTR MaLR 1 388 -117 5293 143 30 29 chr3_random 7081970 7083111 -1345170 - L1 LINE L1 -3393 4172 3025 1611 168 0 37 chr3_random 7083111 7083379 -1344902 - AluSx SINE Alu -52 260 3 5293 143 30 29 chr3_random 7083379 7083665 -1344616 - L1 LINE L1 -4540 3025 2741 1381 228 165 59 chr3_random 7083668 7084379 -1343902 - L1 LINE L1 -6235 1254 469 1193 228 42 62 chr3_random 7084787 7085220 -1343061 + MER39 LTR ERV1 67 687 -20 225 256 221 68 chr3_random 7085297 7085651 -1342630 - MLT1K LTR MaLR -2 586 177 341 54 0 70 chr3_random 7085651 7085691 -1342590 - MLT2A1 LTR ERVL 0 444 417 822 71 53 0 chr3_random 7085691 7085861 -1342420 + (TA)n Simple_repeat Simple_repeat 1 179 0 341 54 0 70 chr3_random 7085861 7085887 -1342394 - MLT2A1 LTR ERVL -27 417 391 232 0 0 0 chr3_random 7085934 7085968 -1342313 - MLT2A1 LTR ERVL -44 400 367 324 315 33 44 chr3_random 7086808 7086989 -1341292 - MER97b DNA MER1_type? -874 179 1 975 219 115 11 chr3_random 7087132 7087566 -1340715 + L1ME2 LINE L1 5522 6154 -10 2538 61 3 0 chr3_random 7088492 7088802 -1339479 - AluY SINE Alu 0 311 1 495 0 0 0 chr3_random 7090005 7090060 -1338221 + (TG)n Simple_repeat Simple_repeat 2 56 0 2244 117 3 0 chr3_random 7091229 7091536 -1336745 + AluSx SINE Alu 1 308 -4 184 286 32 32 chr3_random 7092223 7092286 -1335995 - L2 LINE L2 -594 2720 2658 1502 170 93 0 chr3_random 7093378 7093648 -1334633 + AluSx SINE Alu 4 298 -14 1610 89 0 0 chr3_random 7093700 7093913 -1334368 + L1PA8 LINE L1 5947 6159 -13 1839 180 92 62 chr3_random 7093981 7094595 -1333686 + MER39 LTR ERV1 1 675 -32 423 0 0 0 chr3_random 7094599 7094646 -1333635 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 251 271 0 0 chr3_random 7095063 7095122 -1333159 - MLT1L LTR MaLR 0 615 557 1173 245 31 93 chr3_random 7095991 7096132 -1332149 - MLT1D LTR MaLR -25 480 332 1735 160 166 11 chr3_random 7096132 7096500 -1331781 + MSTA LTR MaLR 1 425 -3 1173 245 31 93 chr3_random 7096500 7096844 -1331437 - MLT1D LTR MaLR -173 332 25 1974 145 8 41 chr3_random 7096928 7097293 -1330988 - THE1A LTR MaLR -2 353 1 11039 101 24 0 chr3_random 7097293 7098834 -1329447 - THE1B-int LTR MaLR 0 1580 3 1974 147 82 15 chr3_random 7098836 7099177 -1329104 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr3_random 7099238 7099266 -1329015 + AT_rich Low_complexity Low_complexity 1 28 0 214 148 37 0 chr3_random 7099340 7099394 -1328887 + (CA)n Simple_repeat Simple_repeat 2 57 0 35 0 0 0 chr3_random 7099870 7099905 -1328376 + AT_rich Low_complexity Low_complexity 1 35 0 764 258 69 80 chr3_random 7100598 7101075 -1327206 + MLT1H LTR MaLR 75 546 -3 720 286 54 0 chr3_random 7102609 7102812 -1325469 + MIR SINE MIR 19 232 -30 435 226 0 12 chr3_random 7102824 7102907 -1325374 - Tigger7 DNA MER2_type -5 2482 2401 4997 130 103 17 chr3_random 7102907 7103415 -1324866 + Tigger3b DNA MER2_type 1 464 -2564 180 0 0 0 chr3_random 7103415 7103435 -1324846 + (CAA)n Simple_repeat Simple_repeat 2 21 0 4997 130 103 17 chr3_random 7103435 7103862 -1324419 + Tigger3b DNA MER2_type 464 1016 -215 285 197 211 13 chr3_random 7103860 7103936 -1324345 + Tigger3b DNA MER2_type 1142 1232 0 * 1122 235 60 8 chr3_random 7103954 7104205 -1324076 - Tigger7 DNA MER2_type -469 264 1 1169 169 22 40 chr3_random 7104298 7104426 -1323855 + MLT2B2 LTR ERVL 1 125 -390 2095 119 37 42 chr3_random 7104426 7104803 -1323478 + THE1C LTR MaLR 1 375 0 1169 169 22 40 chr3_random 7104803 7104899 -1323382 + MLT2B2 LTR ERVL 125 221 -294 2402 157 9 41 chr3_random 7105039 7105499 -1322782 - MER65A LTR ERV1 0 445 1 229 287 128 0 chr3_random 7105753 7105847 -1322434 - MLT1I LTR MaLR -26 383 278 337 241 103 9 chr3_random 7105922 7106038 -1322243 - MLT1I LTR MaLR -257 152 26 276 321 19 0 chr3_random 7107500 7107606 -1320675 - MLT1I LTR MaLR -241 168 61 399 319 128 13 chr3_random 7107776 7108002 -1320279 - MIR SINE MIR -2 260 9 1609 224 47 7 chr3_random 7110090 7110496 -1317785 - L1MD2 LINE L1 -26 6333 5912 558 235 68 6 chr3_random 7110492 7110654 -1317627 - L1MDb LINE L1 -1931 4609 4438 * 322 140 0 0 chr3_random 7110664 7110721 -1317560 - MLT2B1 LTR ERVL 0 520 464 312 162 69 29 chr3_random 7110730 7110903 -1317378 + (TA)n Simple_repeat Simple_repeat 1 180 0 2123 224 53 13 chr3_random 7110903 7111353 -1316928 - MLT2B1 LTR ERVL -52 468 1 2133 271 44 8 chr3_random 7111353 7112195 -1316086 - L1MDb LINE L1 -2099 4441 3570 * 3457 248 53 26 chr3_random 7112191 7114042 -1314239 - L1MDb LINE L1 -3809 2731 830 477 259 81 43 chr3_random 7114562 7114695 -1313586 - L1MDb LINE L1 -6312 228 85 1503 169 140 38 chr3_random 7114695 7115145 -1313136 + LTR54B LTR ERV1 1 496 -2 477 259 81 43 chr3_random 7115145 7115196 -1313085 - L1MDb LINE L1 -6455 85 37 2013 172 12 3 chr3_random 7115200 7115538 -1312743 - MER61A LTR ERV1 -2 341 1 2447 95 12 4 chr3_random 7115539 7116217 -1312064 - MER61A-int LTR ERV1 -1 5216 4491 472 171 0 13 chr3_random 7116208 7116284 -1311997 - MER61A-int LTR ERV1 -645 4572 4498 * 9833 86 10 27 chr3_random 7116280 7117773 -1310508 - MER61A-int LTR ERV1 -2354 2863 1396 2574 180 39 39 chr3_random 7117753 7118319 -1309962 - MER61A-int LTR ERV1 -4650 567 2 * 2008 172 9 9 chr3_random 7118320 7118663 -1309618 - MER61A LTR ERV1 0 343 1 305 209 22 66 chr3_random 7118881 7118972 -1309309 - MIR3 SINE MIR -37 171 85 644 289 54 44 chr3_random 7119127 7119442 -1308839 - L2 LINE L2 0 3313 2996 666 243 7 0 chr3_random 7119822 7119966 -1308315 + MER58B DNA MER1_type 197 341 0 21 36 0 0 chr3_random 7120131 7120159 -1308122 + AT_rich Low_complexity Low_complexity 1 28 0 3817 154 5 7 chr3_random 7120302 7120899 -1307382 - MER72 LTR ERV1 -126 596 1 525 363 58 13 chr3_random 7121154 7121463 -1306818 + L2 LINE L2 29 351 -2963 3274 138 13 19 chr3_random 7121522 7122064 -1306217 - MER34C LTR ERV1 0 585 47 250 307 13 0 chr3_random 7122073 7122148 -1306133 + L2 LINE L2 486 561 -2753 313 182 0 39 chr3_random 7122155 7122232 -1306049 + MER53 DNA DNA 2 75 -114 770 345 58 10 chr3_random 7122269 7122666 -1305615 + L2 LINE L2 578 993 -2321 2834 140 83 18 chr3_random 7122667 7123223 -1305058 - LTR49 LTR ERV1 -3 592 1 512 359 14 5 chr3_random 7123232 7123444 -1304837 + L2 LINE L2 1490 1703 -1611 2168 120 23 0 chr3_random 7123451 7123750 -1304531 + AluSp SINE Alu 1 306 -7 1992 245 83 20 chr3_random 7123760 7124311 -1303970 - LTR26 LTR ERV1 -2 601 16 1125 302 257 4 chr3_random 7124328 7125136 -1303145 + L2 LINE L2 1715 2727 -587 754 244 112 84 chr3_random 7125179 7125633 -1302648 + LTR48B LTR ERV1 1 467 -177 283 232 120 35 chr3_random 7125648 7125790 -1302491 - LTR28 LTR ERV1 -16 1004 851 881 222 128 43 chr3_random 7125791 7126206 -1302075 - LTR1B LTR ERV1 -318 508 59 798 181 39 13 chr3_random 7126241 7126406 -1301875 + LTR48 LTR ERV1 455 747 -31 838 138 7 7 chr3_random 7126756 7126908 -1301373 + CT-rich Low_complexity Low_complexity 4 155 0 265 182 27 136 chr3_random 7126908 7127018 -1301263 - L1MEd LINE L1 -5735 384 287 200 149 21 0 chr3_random 7127893 7127940 -1300341 + (TA)n Simple_repeat Simple_repeat 1 48 0 213 267 17 0 chr3_random 7127965 7128025 -1300256 + (TA)n Simple_repeat Simple_repeat 1 61 0 248 200 17 0 chr3_random 7128049 7128109 -1300172 + (TA)n Simple_repeat Simple_repeat 1 61 0 1753 146 3 75 chr3_random 7128434 7128755 -1299526 + AluSx SINE Alu 1 298 -14 1172 195 8 18 chr3_random 7128825 7129349 -1298932 - MER34B LTR ERV1 0 565 7 1918 137 40 26 chr3_random 7129511 7129891 -1298390 - L1MA3 LINE L1 -2 6303 5919 1843 148 22 6 chr3_random 7129891 7130202 -1298079 + MER50 LTR ERV1 1 316 -418 1643 182 14 7 chr3_random 7130194 7130490 -1297791 + MER50 LTR ERV1 434 731 -3 * 742 122 0 0 chr3_random 7130493 7130600 -1297681 - L1MA3 LINE L1 -383 5922 5816 194 264 0 69 chr3_random 7132011 7132083 -1296198 - MIR SINE MIR -41 221 155 612 291 111 59 chr3_random 7133901 7134424 -1293857 - L2 LINE L2 -1155 2159 1610 1488 344 110 7 chr3_random 7134424 7135169 -1293112 - L2 LINE L2 -2386 928 107 1228 256 98 47 chr3_random 7135175 7135647 -1292634 + MLT1D LTR MaLR 2 497 -8 239 0 0 31 chr3_random 7135772 7135804 -1292477 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 3955 30 0 0 chr3_random 7135819 7136282 -1291999 - L1PA4 LINE L1 -16 6139 5677 2484 41 3 0 chr3_random 7136336 7136628 -1291653 - AluY SINE Alu -18 293 1 619 276 59 23 chr3_random 7136671 7136723 -1291558 - MLT1G1 LTR MaLR -315 275 226 1188 94 139 0 chr3_random 7136723 7136925 -1291356 + MER30 DNA MER1_type 1 230 0 619 276 59 23 chr3_random 7136925 7137108 -1291173 - MLT1G1 LTR MaLR -364 226 42 2314 74 182 3 chr3_random 7137611 7137991 -1290290 - LTR7 LTR ERV1 -2 448 1 201 39 0 0 chr3_random 7137993 7138019 -1290262 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr3_random 7138762 7138783 -1289498 + (CA)n Simple_repeat Simple_repeat 2 22 0 207 209 0 0 chr3_random 7140328 7140371 -1287910 + A-rich Low_complexity Low_complexity 1 43 0 34 0 0 0 chr3_random 7140643 7140677 -1287604 + AT_rich Low_complexity Low_complexity 1 34 0 1800 168 30 72 chr3_random 7140709 7140880 -1287401 + MLT1B LTR MaLR 3 180 -210 2300 117 0 0 chr3_random 7140880 7141188 -1287093 + AluSx SINE Alu 3 310 -2 1800 168 30 72 chr3_random 7141188 7141421 -1286860 + MLT1B LTR MaLR 180 390 0 355 337 55 25 chr3_random 7141553 7141716 -1286565 - HAL1 LINE L1 -115 2392 2225 1092 254 42 28 chr3_random 7142061 7142349 -1285932 - MLT2E LTR ERVL -2 626 335 506 230 37 7 chr3_random 7142571 7142706 -1285575 - HAL1 LINE L1 -838 1669 1531 318 344 70 16 chr3_random 7142794 7142922 -1285359 - HAL1 LINE L1 -1641 866 732 344 301 112 79 chr3_random 7142967 7143412 -1284869 - HAL1 LINE L1 -1989 518 59 220 333 127 66 chr3_random 7143592 7143820 -1284461 - L2 LINE L2 -16 3256 3015 192 313 194 7 chr3_random 7144328 7144472 -1283809 - MIR SINE MIR -64 198 28 309 70 0 0 chr3_random 7144546 7144589 -1283692 + MADE1 DNA Mariner 36 78 -2 2647 30 3 0 chr3_random 7144761 7145063 -1283218 - AluY SINE Alu -5 306 4 414 0 0 0 chr3_random 7146764 7146810 -1281471 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 211 0 0 chr3_random 7147237 7147294 -1280987 + (TG)n Simple_repeat Simple_repeat 2 58 0 908 124 0 0 chr3_random 7147444 7147573 -1280708 - AluSc SINE Alu -15 294 166 2038 138 0 3 chr3_random 7147675 7147973 -1280308 - AluSx SINE Alu -15 297 1 557 241 15 62 chr3_random 7148309 7148504 -1279777 - L1ME2 LINE L1 -33 6131 5946 421 289 39 19 chr3_random 7148533 7148689 -1279592 + MIR SINE MIR 48 206 -56 936 243 12 58 chr3_random 7148916 7149159 -1279122 - MIR SINE MIR -30 232 1 2446 146 44 7 chr3_random 7149676 7150087 -1278194 - MSTB LTR MaLR 0 426 1 277 287 69 0 chr3_random 7150814 7150901 -1277380 - MIR SINE MIR -78 184 92 345 218 228 0 chr3_random 7150956 7151057 -1277224 + MER63 DNA MER1_type 1 750 -86 240 284 37 0 chr3_random 7151062 7151143 -1277138 + MER63 DNA MER1_type 977 1060 0 1124 201 43 112 chr3_random 7151939 7152245 -1276036 - MLT1A1 LTR MaLR 0 365 90 2325 101 0 0 chr3_random 7152245 7152543 -1275738 - AluSx SINE Alu -14 298 1 1124 201 43 112 chr3_random 7152543 7152628 -1275653 - MLT1A1 LTR MaLR -275 90 1 255 191 0 0 chr3_random 7153815 7153878 -1274403 + (TA)n Simple_repeat Simple_repeat 1 63 0 441 380 20 5 chr3_random 7155010 7155210 -1273071 - MIR SINE MIR -48 214 12 1799 122 0 0 chr3_random 7155851 7156097 -1272184 - AluSx SINE Alu -6 306 61 1020 186 17 17 chr3_random 7156472 7156708 -1271573 + L1MB8 LINE L1 5933 6168 -10 283 145 29 0 chr3_random 7156708 7156777 -1271504 + (TA)n Simple_repeat Simple_repeat 1 71 0 1287 256 33 77 chr3_random 7157282 7157826 -1270455 + MLT2B1 LTR ERVL 1 520 0 756 213 71 5 chr3_random 7158017 7158164 -1270117 - L1MA9 LINE L1 -5 6307 6140 429 20 0 0 chr3_random 7158164 7158214 -1270067 + (TG)n Simple_repeat Simple_repeat 1 50 0 756 213 71 5 chr3_random 7158214 7158277 -1270004 - L1MA9 LINE L1 -172 6140 6083 6333 189 87 26 chr3_random 7158538 7158949 -1269332 - L1 LINE L1 -1257 4889 4504 1680 182 38 15 chr3_random 7158949 7159289 -1268992 - MER7A DNA MER2_type 0 346 1 6333 189 87 26 chr3_random 7159289 7160544 -1267737 - L1 LINE L1 -1642 4504 3122 332 212 59 0 chr3_random 7160545 7160630 -1267651 + ERVL-B1 LTR ERVL 27 116 -5648 3943 171 33 41 chr3_random 7160631 7161439 -1266842 + ERVL-B1 LTR ERVL 4956 5757 -7 1244 254 24 81 chr3_random 7161439 7161947 -1266334 + MLT2B1 LTR ERVL 1 479 -41 240 133 89 0 chr3_random 7161995 7162040 -1266241 + MLT2B1 LTR ERVL 472 520 0 259 279 120 60 chr3_random 7162045 7162228 -1266053 - MLT1L LTR MaLR 0 615 422 365 322 7 34 chr3_random 7162582 7162731 -1265550 + MIR SINE MIR 118 262 0 1372 30 0 6 chr3_random 7163264 7163431 -1264850 - L1PA4 LINE L1 -3 6152 5987 381 361 64 56 chr3_random 7163791 7164621 -1263660 + L1MC4a LINE L1 7116 8032 -10 1038 156 99 33 chr3_random 7165086 7165297 -1262984 + AluJb SINE Alu 86 310 -2 1007 213 121 29 chr3_random 7165624 7165938 -1262343 + MER2 DNA MER2_type 2 344 0 1130 269 99 35 chr3_random 7166279 7167843 -1260438 - L1MEc LINE L1 -2388 3827 2108 915 283 42 33 chr3_random 7167843 7168296 -1259985 + LTR16A1 LTR ERVL 1 457 0 1130 269 99 35 chr3_random 7168296 7168376 -1259905 - L1MEc LINE L1 -4107 2108 2035 296 250 16 0 chr3_random 7168633 7168697 -1259584 + LTR16A1 LTR ERVL 393 457 0 21 36 0 0 chr3_random 7170198 7170226 -1258055 + AT_rich Low_complexity Low_complexity 1 28 0 303 365 20 20 chr3_random 7170400 7170548 -1257733 + MIR3 SINE MIR 16 163 -45 591 238 66 55 chr3_random 7170933 7171114 -1257167 - MER5A DNA MER1_type -5 184 2 23 78 0 0 chr3_random 7171454 7171505 -1256776 + AT_rich Low_complexity Low_complexity 1 51 0 862 236 125 12 chr3_random 7172310 7172756 -1255525 + MLT1H LTR MaLR 8 549 0 336 322 164 34 chr3_random 7172778 7173005 -1255276 + MLT1J LTR MaLR 17 213 -298 1919 139 20 0 chr3_random 7173005 7173299 -1254982 - AluSx SINE Alu -12 300 1 336 322 164 34 chr3_random 7173299 7173456 -1254825 + MLT1J LTR MaLR 213 451 -60 185 250 77 0 chr3_random 7173689 7173741 -1254540 - MIR SINE MIR -2 260 205 243 152 0 0 chr3_random 7174467 7174513 -1253768 + (TG)n Simple_repeat Simple_repeat 2 47 0 337 20 40 0 chr3_random 7175292 7175342 -1252939 + (TG)n Simple_repeat Simple_repeat 2 53 0 1940 161 0 0 chr3_random 7177005 7177315 -1250966 + AluSx SINE Alu 3 312 0 201 143 0 0 chr3_random 7178310 7178345 -1249936 + (CAA)n Simple_repeat Simple_repeat 2 36 0 261 321 94 28 chr3_random 7179197 7179303 -1248978 - L3 LINE CR1 -21 1556 1444 527 156 73 18 chr3_random 7181635 7181744 -1246537 - MER53 DNA DNA -2 187 73 315 217 25 83 chr3_random 7181756 7181876 -1246405 - MER53 DNA DNA -76 113 1 386 297 39 0 chr3_random 7182247 7182375 -1245906 + MER94 DNA DNA 1 133 -1 297 333 23 97 chr3_random 7183760 7184193 -1244088 - L2 LINE L2 -8 3264 2864 225 0 0 0 chr3_random 7184361 7184386 -1243895 + (TG)n Simple_repeat Simple_repeat 2 26 0 1917 213 19 36 chr3_random 7184585 7185060 -1243221 - MLT1C LTR MaLR 0 467 1 290 216 39 111 chr3_random 7185106 7185259 -1243022 + MIR SINE MIR 114 255 -7 2125 111 3 0 chr3_random 7187119 7187425 -1240856 - AluSg SINE Alu -3 307 1 2712 19 3 0 chr3_random 7187430 7187737 -1240544 - AluY SINE Alu -3 308 1 254 203 25 63 chr3_random 7188045 7188124 -1240157 + MER116 DNA Mariner 3 78 -2 24 53 0 0 chr3_random 7188326 7188364 -1239917 + AT_rich Low_complexity Low_complexity 1 38 0 313 269 65 9 chr3_random 7188599 7188717 -1239564 - MIR SINE MIR -62 146 38 233 266 78 16 chr3_random 7189005 7189069 -1239212 - L2 LINE L2 -3 3269 3202 259 304 192 55 chr3_random 7189440 7189821 -1238460 - L2 LINE L2 -13 3300 2868 27 81 0 0 chr3_random 7190805 7190867 -1237414 + AT_rich Low_complexity Low_complexity 1 62 0 296 383 17 28 chr3_random 7191470 7191650 -1236631 + MIR SINE MIR 48 225 -37 180 319 159 0 chr3_random 7191734 7191803 -1236478 + L2 LINE L2 3186 3265 -7 192 283 19 0 chr3_random 7192332 7192385 -1235896 + L2 LINE L2 1626 1679 -1635 61 88 0 0 chr3_random 7192419 7192578 -1235703 + AT_rich Low_complexity Low_complexity 1 159 0 364 188 181 14 chr3_random 7192658 7192802 -1235479 - Charlie2a DNA MER1_type -3 2859 2692 1520 265 47 16 chr3_random 7192802 7193292 -1234989 + L1MC4a LINE L1 7304 7808 0 2146 241 155 35 chr3_random 7193324 7194670 -1233611 - Charlie2a DNA MER1_type -514 2348 841 450 36 0 0 chr3_random 7195037 7195093 -1233188 + (TG)n Simple_repeat Simple_repeat 2 57 0 3464 265 105 30 chr3_random 7195536 7197179 -1231102 + HAL1 LINE L1 362 2127 -380 439 224 15 94 chr3_random 7197277 7197478 -1230803 - 7SK RNA RNA -8 185 1 383 257 139 32 chr3_random 7197514 7197701 -1230580 + HAL1 LINE L1 2146 2352 -155 311 366 15 0 chr3_random 7199884 7200015 -1228266 - MIR3 SINE MIR -1 207 75 230 320 39 0 chr3_random 7200074 7200152 -1228129 - MIR SINE MIR -68 140 60 435 207 0 9 chr3_random 7200192 7200303 -1227978 - L1PB3 LINE L1 -2 6152 6043 5259 247 29 41 chr3_random 7200305 7202480 -1225801 - L1PBa LINE L1 -2738 4124 2859 2197 99 10 0 chr3_random 7202480 7202773 -1225508 - AluSc SINE Alu -13 296 1 5259 247 29 41 chr3_random 7202773 7205597 -1222684 - L1PBa LINE L1 -4003 2859 3 1103 320 89 38 chr3_random 7205707 7206344 -1221937 + L2 LINE L2 2241 2910 -404 225 0 0 0 chr3_random 7206358 7206383 -1221898 + (T)n Simple_repeat Simple_repeat 1 25 0 1408 260 136 25 chr3_random 7206509 7207024 -1221257 + MLT1E LTR MaLR 1 572 -21 180 0 0 0 chr3_random 7207988 7208008 -1220273 + (T)n Simple_repeat Simple_repeat 1 20 0 249 57 0 0 chr3_random 7208096 7208131 -1220150 + (CA)n Simple_repeat Simple_repeat 1 35 0 601 254 0 0 chr3_random 7209028 7209146 -1219135 + FLAM_A SINE Alu 1 118 -15 204 40 0 0 chr3_random 7209242 7209267 -1219014 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1257 220 15 31 chr3_random 7209362 7209770 -1218511 - MER93b LTR ERV1 -4 369 6 342 0 0 0 chr3_random 7210900 7210938 -1217343 + (TG)n Simple_repeat Simple_repeat 1 38 0 2338 67 0 3 chr3_random 7211997 7212296 -1215985 + AluY SINE Alu 1 298 -13 6859 137 34 3 chr3_random 7212673 7214292 -1213989 + L1MA2 LINE L1 4626 6304 0 21 57 0 0 chr3_random 7214292 7214327 -1213954 + AT_rich Low_complexity Low_complexity 1 35 0 409 355 35 6 chr3_random 7214431 7214603 -1213678 - MIR SINE MIR -66 196 20 2298 25 11 14 chr3_random 7214646 7214953 -1213328 - AluY SINE Alu 0 306 1 234 315 0 14 chr3_random 7214982 7215055 -1213226 - MLT1I LTR MaLR -144 265 194 448 297 0 8 chr3_random 7215881 7216009 -1212272 - MLT1I LTR MaLR -278 131 5 1288 196 29 13 chr3_random 7216949 7217265 -1211016 - MER33 DNA MER1_type -1 323 3 240 178 22 0 chr3_random 7217373 7217418 -1210863 + L2 LINE L2 3261 3306 -7 409 235 49 20 chr3_random 7217447 7217549 -1210732 - L2 LINE L2 -17 3296 3192 181 346 0 0 chr3_random 7217767 7217819 -1210462 + L2 LINE L2 2887 2938 -334 31 44 0 0 chr3_random 7218844 7218889 -1209392 + AT_rich Low_complexity Low_complexity 1 45 0 946 257 43 26 chr3_random 7220149 7220453 -1207828 - L1ME LINE L1 -597 5567 5259 1790 183 24 6 chr3_random 7221646 7221984 -1206297 + MER50 LTR ERV1 1 344 -390 1762 189 54 10 chr3_random 7222084 7222470 -1205811 + L1MB2 LINE L1 5768 6170 -1 253 250 0 0 chr3_random 7223065 7223121 -1205160 + Charlie8 DNA MER1_type 2362 2417 0 1979 134 62 20 chr3_random 7223460 7223817 -1204464 - THE1C LTR MaLR -3 372 1 1998 160 0 0 chr3_random 7224041 7224341 -1203940 + AluSx SINE Alu 2 301 -11 22 70 0 0 chr3_random 7224736 7224779 -1203502 + AT_rich Low_complexity Low_complexity 1 43 0 2563 121 2 2 chr3_random 7226301 7226698 -1201583 - L1PA13 LINE L1 -11 6152 5756 572 118 0 0 chr3_random 7226698 7226783 -1201498 + L1PA13 LINE L1 5654 5738 -430 261 357 0 0 chr3_random 7228602 7228686 -1199595 + MER5A DNA MER1_type 31 114 -75 2179 129 32 27 chr3_random 7228690 7229063 -1199218 - THE1C LTR MaLR 0 375 1 917 304 62 38 chr3_random 7229289 7229759 -1198522 - L2 LINE L2 -6 3307 2827 1487 167 164 31 chr3_random 7229791 7230145 -1198136 + MSTA LTR MaLR 15 415 -13 3466 276 90 112 chr3_random 7230163 7230902 -1197379 - L2 LINE L2 -540 2774 2020 2289 98 10 0 chr3_random 7230902 7231209 -1197072 + AluY SINE Alu 1 310 -1 3466 276 90 112 chr3_random 7231209 7231695 -1196586 - L2 LINE L2 -1294 2020 1525 1726 208 136 32 chr3_random 7231695 7232166 -1196115 + MLT2B1 LTR ERVL 1 520 0 3466 276 90 112 chr3_random 7232166 7233674 -1194607 - L2 LINE L2 -1789 1525 32 21 36 0 0 chr3_random 7234857 7234885 -1193396 + AT_rich Low_complexity Low_complexity 1 28 0 232 381 59 56 chr3_random 7235073 7235393 -1192888 - L2 LINE L2 -1 3271 2951 2384 54 10 3 chr3_random 7235530 7235827 -1192454 + AluY SINE Alu 1 299 -12 263 250 0 16 chr3_random 7236012 7236076 -1192205 - MLT1K LTR MaLR -346 242 180 2150 100 45 0 chr3_random 7236529 7236818 -1191463 + AluSq SINE Alu 1 302 -11 213 39 0 0 chr3_random 7236866 7236874 -1191407 + (CA)n Simple_repeat Simple_repeat 1 34 0 213 39 0 0 chr3_random 7236874 7236900 -1191381 + (CA)n Simple_repeat Simple_repeat 1 26 0 966 245 99 73 chr3_random 7238953 7239465 -1188816 + MLT1E LTR MaLR 1 585 -8 269 346 124 13 chr3_random 7240031 7240184 -1188097 - MIR SINE MIR -16 246 77 314 222 32 63 chr3_random 7241657 7241783 -1186498 - MIR3 SINE MIR -37 171 50 204 97 0 0 chr3_random 7242939 7242970 -1185311 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1589 225 0 3 chr3_random 7242970 7243272 -1185009 - 7SLRNA srpRNA srpRNA -19 301 1 207 157 39 20 chr3_random 7243829 7243880 -1184401 + (TG)n Simple_repeat Simple_repeat 2 53 0 580 243 22 39 chr3_random 7245642 7245823 -1182458 + MER5B DNA MER1_type 1 178 0 2580 148 67 86 chr3_random 7246719 7247451 -1180830 - L1MCa LINE L1 -4954 1472 755 261 0 0 0 chr3_random 7247450 7247486 -1180795 + L1PA3 LINE L1 6117 6152 -3 * 3828 184 26 39 chr3_random 7247533 7248308 -1179973 - L1MCa LINE L1 -5656 770 6 708 86 17 17 chr3_random 7248557 7248673 -1179608 + MLT2A2 LTR ERVL 1 116 -337 25 65 0 0 chr3_random 7298996 7299042 -1129239 + AT_rich Low_complexity Low_complexity 1 46 0 1177 282 35 8 chr3_random 7299625 7300135 -1128146 + L1M4 LINE L1 2235 2758 -3388 1023 78 7 7 chr3_random 7300237 7300391 -1127890 - L1P LINE L1 -1635 4511 4358 789 238 34 50 chr3_random 7300371 7300728 -1127553 - L1MC4a LINE L1 -497 7311 6961 * 192 40 0 0 chr3_random 7300833 7300858 -1127423 + (CA)n Simple_repeat Simple_repeat 2 26 0 1244 228 80 12 chr3_random 7300879 7301270 -1127011 - MLT2B1 LTR ERVL -63 457 1 326 241 86 68 chr3_random 7301282 7301444 -1126837 + MLT1D LTR MaLR 64 228 -277 481 272 82 49 chr3_random 7301450 7301655 -1126626 - L1MD3 LINE L1 -1215 6593 6396 1422 209 7 10 chr3_random 7301655 7301952 -1126329 - AluJo SINE Alu -6 296 1 481 272 82 49 chr3_random 7301952 7302494 -1125787 - L1MD3 LINE L1 -1412 6396 5924 2702 98 16 0 chr3_random 7302494 7302863 -1125418 - THE1C LTR MaLR 0 375 1 481 272 82 49 chr3_random 7302863 7303235 -1125046 - L1MD3 LINE L1 -1884 5924 5566 21 57 0 0 chr3_random 7303553 7303588 -1124693 + AT_rich Low_complexity Low_complexity 1 35 0 2067 121 21 0 chr3_random 7304512 7304802 -1123479 + AluSx SINE Alu 3 298 -14 597 272 83 43 chr3_random 7304830 7305204 -1123077 + L1ME3 LINE L1 5521 5839 -331 1551 196 57 20 chr3_random 7305408 7305578 -1122703 + MLT1A1 LTR MaLR 1 163 -202 7296 43 11 0 chr3_random 7305578 7306606 -1121675 - L1PA5 LINE L1 -2 6152 5122 1551 196 57 20 chr3_random 7306606 7306787 -1121494 + MLT1A1 LTR MaLR 163 365 0 27 49 0 0 chr3_random 7306852 7306893 -1121388 + AT_rich Low_complexity Low_complexity 1 41 0 313 255 20 0 chr3_random 7307241 7307339 -1120942 + (TA)n Simple_repeat Simple_repeat 1 100 0 315 293 88 35 chr3_random 7308175 7308319 -1119962 - MIR SINE MIR -62 146 16 803 287 52 12 chr3_random 7308574 7308898 -1119383 + L1ME3 LINE L1 5825 6161 -1 4622 255 73 39 chr3_random 7308902 7311104 -1117177 + L1ME2 LINE L1 3193 5518 -646 1249 247 123 42 chr3_random 7311109 7311235 -1117046 + L1ME2 LINE L1 5595 5709 -455 378 0 0 0 chr3_random 7311235 7311277 -1117004 + (CAAAA)n Simple_repeat Simple_repeat 1 42 0 1249 247 123 42 chr3_random 7311277 7311669 -1116612 + L1ME2 LINE L1 5709 6155 -9 243 232 71 0 chr3_random 7312833 7312889 -1115392 - MIR SINE MIR -144 118 59 2521 133 8 0 chr3_random 7312889 7313250 -1115031 + THE1B LTR MaLR 1 364 0 2249 223 45 5 chr3_random 7313321 7313659 -1114622 + MER70A LTR ERVL 1 363 -109 207 0 0 0 chr3_random 7313659 7313682 -1114599 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2249 223 45 5 chr3_random 7313682 7313791 -1114490 + MER70A LTR ERVL 363 466 -6 303 281 240 0 chr3_random 7315180 7315301 -1112980 + MER5A DNA MER1_type 40 189 0 1584 235 56 44 chr3_random 7316464 7316961 -1111320 + MLT1D LTR MaLR 1 503 -2 25 83 0 0 chr3_random 7318318 7318378 -1109903 + AT_rich Low_complexity Low_complexity 1 60 0 28 29 0 0 chr3_random 7318449 7318484 -1109797 + AT_rich Low_complexity Low_complexity 1 35 0 180 77 0 0 chr3_random 7319056 7319082 -1109199 + (A)n Simple_repeat Simple_repeat 1 26 0 2036 115 0 35 chr3_random 7319843 7320157 -1108124 + AluSx SINE Alu 1 303 -9 230 284 0 14 chr3_random 7320871 7320945 -1107336 + MIR SINE MIR 3 75 -187 273 265 135 9 chr3_random 7323801 7323915 -1104366 + MLT1J2 LTR MaLR 82 218 -228 1719 195 0 0 chr3_random 7324107 7324399 -1103882 - AluJb SINE Alu -20 292 1 191 398 0 0 chr3_random 7326323 7326421 -1101860 - L2 LINE L2 -217 3055 2958 185 313 16 0 chr3_random 7327987 7328051 -1100230 - L2 LINE L2 0 3313 3249 1198 230 81 67 chr3_random 7329692 7330188 -1098093 - MLT1D LTR MaLR 0 505 3 290 333 124 0 chr3_random 7330266 7330371 -1097910 - L2 LINE L2 -9 3263 3146 181 355 21 71 chr3_random 7331306 7331447 -1096834 - L2 LINE L2 -2 3270 3137 962 257 64 61 chr3_random 7331932 7332467 -1095814 - MER39 LTR ERV1 0 707 1 230 383 67 17 chr3_random 7332655 7332895 -1095386 - L2 LINE L2 -1021 2293 2042 1332 94 196 0 chr3_random 7333323 7333558 -1094723 - LTR12 LTR ERV1 -433 281 1 403 242 72 42 chr3_random 7333614 7333920 -1094361 - pTR5 LTR ERV1 -1383 1055 741 22 0 0 0 chr3_random 7334133 7334155 -1094126 + AT_rich Low_complexity Low_complexity 1 22 0 911 226 9 49 chr3_random 7335269 7335495 -1092786 - MER20 DNA MER1_type 0 219 3 2141 112 7 0 chr3_random 7336294 7336589 -1091692 - AluSq SINE Alu -14 299 3 243 0 0 0 chr3_random 7336669 7336696 -1091585 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr3_random 7336729 7336751 -1091530 + AT_rich Low_complexity Low_complexity 1 22 0 318 26 0 0 chr3_random 7336987 7337026 -1091255 + (CA)n Simple_repeat Simple_repeat 2 40 0 234 0 0 0 chr3_random 7337236 7337262 -1091019 + (T)n Simple_repeat Simple_repeat 1 26 0 642 330 62 27 chr3_random 7338193 7338451 -1089830 - MER115 DNA AcHobo -392 301 35 219 233 8 67 chr3_random 7339185 7339305 -1088976 + T-rich Low_complexity Low_complexity 3 115 0 1860 156 3 0 chr3_random 7339319 7339607 -1088674 + AluSx SINE Alu 1 289 -23 27 0 0 0 chr3_random 7339633 7339660 -1088621 + AT_rich Low_complexity Low_complexity 1 27 0 356 340 0 0 chr3_random 7341495 7341595 -1086686 - MIR SINE MIR -110 152 53 1033 249 165 48 chr3_random 7342568 7343082 -1085199 - MLT1F1 LTR MaLR 0 567 3 1441 282 78 31 chr3_random 7343716 7344454 -1083827 + L2 LINE L2 2521 3298 -15 3909 52 6 2 chr3_random 7345051 7345550 -1082731 - L1PA4 LINE L1 -1 6154 5654 331 350 207 31 chr3_random 7345601 7346283 -1081998 + L3 LINE CR1 773 1574 -3 253 267 23 52 chr3_random 7349027 7349199 -1079082 - L1MEd LINE L1 -5941 178 12 376 297 53 84 chr3_random 7349752 7350109 -1078172 + L2 LINE L2 2623 2968 -346 207 319 187 0 chr3_random 7350330 7350421 -1077860 + L2 LINE L2 3163 3270 -2 514 58 0 92 chr3_random 7350528 7350615 -1077666 - MER4B-int LTR ERV1 -152 6606 6528 6581 116 13 21 chr3_random 7350636 7351642 -1076639 - MER4B-int LTR ERV1 -572 6186 5189 14524 167 27 13 chr3_random 7351643 7356369 -1071912 + L1MA1 LINE L1 2042 6850 -743 22174 29 5 0 chr3_random 7356370 7359816 -1068465 + L1PA3 LINE L1 2697 6154 -1 5401 120 14 3 chr3_random 7359827 7360437 -1067844 + L1MA1 LINE L1 6847 7470 -251 222 37 0 0 chr3_random 7360437 7360464 -1067817 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5401 120 14 3 chr3_random 7360464 7360712 -1067569 + L1MA1 LINE L1 7470 7714 -7 35 41 0 0 chr3_random 7360712 7360761 -1067520 + AT_rich Low_complexity Low_complexity 1 49 0 1929 134 66 38 chr3_random 7360883 7361248 -1067033 + THE1C LTR MaLR 1 375 0 9689 114 36 32 chr3_random 7361248 7362785 -1065496 + THE1C-int LTR MaLR 1 1542 -38 956 102 0 0 chr3_random 7362786 7362923 -1065358 + THE1C-int LTR MaLR 1444 1580 0 1962 123 66 41 chr3_random 7362923 7363289 -1064992 + THE1C LTR MaLR 1 375 0 33 56 0 0 chr3_random 7364622 7364676 -1063605 + AT_rich Low_complexity Low_complexity 1 54 0 413 279 70 6 chr3_random 7364690 7364848 -1063433 - L1M4 LINE L1 -1494 4652 4485 784 161 15 0 chr3_random 7365028 7365158 -1063123 - THE1C LTR MaLR 0 375 244 209 263 40 0 chr3_random 7365398 7365474 -1062807 + (TATATG)n Simple_repeat Simple_repeat 6 84 0 253 296 65 9 chr3_random 7365615 7365723 -1062558 - MLT1L LTR MaLR -84 531 418 446 320 26 9 chr3_random 7365726 7365957 -1062324 - L1ME4a LINE L1 -294 5827 5593 469 289 91 24 chr3_random 7367153 7367440 -1060841 + MLT1K LTR MaLR 272 577 -11 24 32 0 0 chr3_random 7367994 7368025 -1060256 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3_random 7369062 7369083 -1059198 + AT_rich Low_complexity Low_complexity 1 21 0 513 292 32 36 chr3_random 7370646 7370896 -1057385 - L1ME2 LINE L1 -15 6149 5901 629 194 103 75 chr3_random 7370930 7371182 -1057099 - L1ME1 LINE L1 -217 5949 5691 6826 62 22 0 chr3_random 7371225 7372789 -1055492 - L1PA7 LINE L1 -2 6152 4571 243 297 99 0 chr3_random 7373154 7373245 -1055036 + MIR SINE MIR 67 166 -96 2093 108 63 26 chr3_random 7373699 7374050 -1054231 - THE1B LTR MaLR 0 364 1 350 332 109 9 chr3_random 7374120 7374390 -1053891 - L2 LINE L2 -250 3063 2771 1819 109 0 12 chr3_random 7374409 7374666 -1053615 + AluY SINE Alu 44 297 -14 2054 106 50 0 chr3_random 7375396 7375518 -1052763 + AluSp SINE Alu 1 116 -197 185 59 59 0 chr3_random 7375518 7375552 -1052729 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2054 106 50 0 chr3_random 7375552 7375712 -1052569 + AluSp SINE Alu 116 297 -16 427 305 160 62 chr3_random 7376157 7376531 -1051750 + L2 LINE L2 2294 2704 -610 330 352 143 37 chr3_random 7376633 7377011 -1051270 + L2 LINE L2 2861 3278 -35 408 240 0 0 chr3_random 7377015 7377136 -1051145 + (TA)n Simple_repeat Simple_repeat 1 121 0 28 61 0 0 chr3_random 7379232 7379281 -1049000 + AT_rich Low_complexity Low_complexity 1 49 0 7979 154 57 14 chr3_random 7380387 7381854 -1046427 + Tigger1 DNA MER2_type 30 1559 -859 5320 121 5 17 chr3_random 7381858 7382670 -1045611 + L1P3 LINE L1 3 804 -5071 17625 169 16 18 chr3_random 7382680 7383008 -1045273 + L1P3 LINE L1 987 1314 -5147 189 0 0 0 chr3_random 7383008 7383029 -1045252 + (CAA)n Simple_repeat Simple_repeat 1 21 0 17625 169 16 18 chr3_random 7383029 7386086 -1042195 + L1P3 LINE L1 1314 4365 -2096 835 135 121 0 chr3_random 7386096 7386237 -1042044 + Tigger1 DNA MER2_type 2259 2416 -2 452 316 13 20 chr3_random 7386675 7386827 -1041454 + MIR SINE MIR 3 153 -109 24 53 0 0 chr3_random 7387018 7387056 -1041225 + AT_rich Low_complexity Low_complexity 1 38 0 46 19 0 0 chr3_random 7387272 7387325 -1040956 + AT_rich Low_complexity Low_complexity 1 53 0 3641 123 22 7 chr3_random 7387964 7388519 -1039762 - Tigger3b DNA MER2_type -668 563 1 237 114 29 0 chr3_random 7389606 7389641 -1038640 - Alu SINE Alu -264 38 3 2084 126 0 7 chr3_random 7390483 7390784 -1037497 + AluSx SINE Alu 1 299 -13 369 94 0 0 chr3_random 7392745 7392798 -1035483 + MADE1 DNA Mariner 28 80 0 844 316 186 33 chr3_random 7394218 7394907 -1033374 - L2 LINE L2 -828 2486 1693 279 0 0 0 chr3_random 7397024 7397062 -1031219 - L1PA3 LINE L1 -3 6152 6115 * 841 102 16 1 chr3_random 7397053 7397186 -1031095 + L1PA4 LINE L1 5981 6131 -37 185 214 36 0 chr3_random 7397188 7397244 -1031037 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 632 313 103 31 chr3_random 7399242 7399533 -1028748 - MLT1J LTR MaLR -197 314 3 1169 299 103 33 chr3_random 7399849 7400379 -1027902 + MLT1G1 LTR MaLR 21 539 -3 289 355 19 0 chr3_random 7400657 7400764 -1027517 + MER5B DNA MER1_type 1 109 -69 574 169 12 127 chr3_random 7400884 7401050 -1027231 - BC200 scRNA scRNA -45 155 9 658 206 175 21 chr3_random 7401593 7401787 -1026494 + MER58A DNA MER1_type 1 224 0 30 69 0 0 chr3_random 7401810 7401868 -1026413 + AT_rich Low_complexity Low_complexity 1 58 0 1794 241 65 39 chr3_random 7402195 7402738 -1025543 + MLT1F1 LTR MaLR 9 565 -2 24 32 0 0 chr3_random 7403521 7403552 -1024729 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr3_random 7403702 7403738 -1024543 + AT_rich Low_complexity Low_complexity 1 36 0 203 352 95 9 chr3_random 7404008 7404113 -1024168 - L2 LINE L2 -9 3263 3150 1532 169 3 69 chr3_random 7405036 7405384 -1022897 - MER4A LTR ERV1 0 664 340 558 105 53 21 chr3_random 7405399 7405494 -1022787 - MER4A LTR ERV1 -566 98 1 2622 99 3 0 chr3_random 7405981 7406335 -1021946 + THE1A LTR MaLR 1 355 0 2130 124 7 7 chr3_random 7407026 7407332 -1020949 + AluSx SINE Alu 1 306 -6 1622 162 50 11 chr3_random 7410402 7410680 -1017601 - AluJo SINE Alu -21 291 3 220 328 0 0 chr3_random 7410682 7410746 -1017535 - MIR SINE MIR -55 153 90 196 349 92 9 chr3_random 7411410 7411639 -1016642 + L2 LINE L2 3005 3252 -61 23 0 0 0 chr3_random 7412748 7412771 -1015510 + AT_rich Low_complexity Low_complexity 1 23 0 326 253 107 33 chr3_random 7413024 7413176 -1015105 + MIR SINE MIR 33 192 -62 207 379 0 29 chr3_random 7414704 7414844 -1013437 + L2 LINE L2 2622 2757 -557 2133 163 41 0 chr3_random 7414863 7415226 -1013055 + MSTA LTR MaLR 51 428 0 204 376 20 10 chr3_random 7415279 7415380 -1012901 + L2 LINE L2 3153 3254 -18 1016 224 44 179 chr3_random 7415574 7415925 -1012356 - LTR40a LTR ERVL -2 517 181 577 92 0 0 chr3_random 7415925 7416012 -1012269 + Alu SINE Alu 223 309 -1 1016 224 44 179 chr3_random 7416012 7416171 -1012110 - LTR40a LTR ERVL -338 181 2 613 244 75 0 chr3_random 7416293 7416453 -1011828 + MER69A DNA AcHobo 2 173 -4 22 35 0 0 chr3_random 7417346 7417375 -1010906 + AT_rich Low_complexity Low_complexity 1 29 0 2540 201 129 33 chr3_random 7417501 7417626 -1010655 + L1MC3 LINE L1 6711 6823 -962 504 32 0 0 chr3_random 7417626 7417688 -1010593 + (CA)n Simple_repeat Simple_repeat 2 63 0 3936 116 40 13 chr3_random 7417697 7418324 -1009957 - LTR9B LTR ERV1 0 644 1 2540 201 129 33 chr3_random 7418324 7418884 -1009397 + L1MC3 LINE L1 6830 7473 -312 27 0 0 0 chr3_random 7418859 7418886 -1009395 + AT_rich Low_complexity Low_complexity 1 27 0 * 1188 125 0 12 chr3_random 7418889 7419057 -1009224 + AluSq SINE Alu 4 169 -144 1007 223 70 13 chr3_random 7419624 7419913 -1008368 + L1ME3A LINE L1 5409 5724 -446 593 184 80 90 chr3_random 7420071 7420283 -1007998 + L1ME3A LINE L1 5770 5979 -191 279 280 9 37 chr3_random 7420304 7420411 -1007870 + L1ME3A LINE L1 6059 6162 -8 189 305 57 9 chr3_random 7421133 7421238 -1007043 - MIR SINE MIR -3 259 150 705 326 45 16 chr3_random 7422882 7423369 -1004912 - HAL1 LINE L1 -757 1750 1250 342 0 0 0 chr3_random 7423827 7423865 -1004416 + (TG)n Simple_repeat Simple_repeat 1 38 0 29 47 0 0 chr3_random 7424229 7424272 -1004009 + AT_rich Low_complexity Low_complexity 1 43 0 2355 124 8 27 chr3_random 7425603 7425974 -1002307 - THE1B LTR MaLR 0 364 1 959 198 48 87 chr3_random 7426162 7426582 -1001699 - MLT1A1 LTR MaLR -3 386 1 31 26 0 0 chr3_random 7426852 7426890 -1001391 + AT_rich Low_complexity Low_complexity 1 38 0 279 0 0 0 chr3_random 7428043 7428074 -1000207 + (TG)n Simple_repeat Simple_repeat 2 32 0 317 260 60 0 chr3_random 7428767 7428867 -999414 + L1ME LINE L1 67 172 -5898 1014 286 72 35 chr3_random 7428927 7429614 -998667 + L1M2 LINE L1 1416 2090 -4241 369 0 0 0 chr3_random 7429666 7429707 -998574 + (CA)n Simple_repeat Simple_repeat 2 42 0 2506 272 37 29 chr3_random 7429723 7430628 -997653 + L1ME LINE L1 3437 4352 -1728 2637 157 25 31 chr3_random 7430628 7431145 -997136 + L1PA16 LINE L1 5637 6150 -16 2506 272 37 29 chr3_random 7431145 7431248 -997033 + L1ME LINE L1 4352 4453 -1627 1318 259 8 3 chr3_random 7431258 7431613 -996668 + L1ME LINE L1 5202 5558 -540 255 189 0 0 chr3_random 7433359 7433412 -994869 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 359 248 92 0 chr3_random 7434472 7434581 -993700 - MIR SINE MIR -68 194 76 1934 141 0 3 chr3_random 7437287 7437577 -990704 + AluSg SINE Alu 3 291 -19 566 240 16 0 chr3_random 7438579 7438700 -989581 - MLT1A2 LTR MaLR -251 123 1 269 312 123 0 chr3_random 7439007 7439145 -989136 + MLT1I LTR MaLR 255 409 0 609 349 103 0 chr3_random 7439174 7439486 -988795 - L1MC/D LINE L1 -2144 5664 5321 379 102 0 0 chr3_random 7439651 7439710 -988571 - L1PA6 LINE L1 -3 6151 6093 986 279 90 36 chr3_random 7439821 7440268 -988013 - L1MC/D LINE L1 -2278 3868 3384 1085 246 60 26 chr3_random 7440268 7440617 -987664 - MLT1A1 LTR MaLR 0 365 5 986 279 90 36 chr3_random 7440617 7440724 -987557 - L1MC/D LINE L1 -2762 3384 3284 301 159 14 14 chr3_random 7441885 7441954 -986327 + (TA)n Simple_repeat Simple_repeat 2 70 0 1186 267 42 50 chr3_random 7442441 7442984 -985297 - L1M4 LINE L1 -1749 4397 3859 240 333 22 44 chr3_random 7443671 7443761 -984520 + MIR SINE MIR 8 95 -167 713 156 0 25 chr3_random 7446263 7446385 -981896 - AluJo SINE Alu -177 135 17 398 273 8 16 chr3_random 7446600 7446721 -981560 + L2 LINE L2 3193 3312 -1 238 310 132 25 chr3_random 7447075 7447272 -981009 - L2 LINE L2 -2543 771 554 196 317 0 0 chr3_random 7447465 7447525 -980756 - L2 LINE L2 -18 3295 3236 195 220 40 0 chr3_random 7449093 7449143 -979138 - L2 LINE L2 -1 3271 3220 207 0 0 0 chr3_random 7449205 7449228 -979053 + (TTG)n Simple_repeat Simple_repeat 2 24 0 27 0 0 0 chr3_random 7449640 7449667 -978614 + AT_rich Low_complexity Low_complexity 1 27 0 210 86 0 57 chr3_random 7450010 7450045 -978236 + (GAGAA)n Simple_repeat Simple_repeat 3 35 0 195 100 0 0 chr3_random 7450462 7450492 -977789 + (TC)n Simple_repeat Simple_repeat 2 31 0 360 77 0 0 chr3_random 7450501 7450553 -977728 + (CA)n Simple_repeat Simple_repeat 1 52 0 1008 389 12 63 chr3_random 7450856 7451283 -976998 + MER68 LTR ERV1 158 562 0 234 222 56 0 chr3_random 7451416 7451470 -976811 - MLT1L LTR MaLR -548 67 11 181 218 55 0 chr3_random 7452195 7452250 -976031 - L2 LINE L2 -94 3219 3162 2287 207 19 4 chr3_random 7452255 7452776 -975505 + L1 LINE L1 4128 4656 -1490 962 348 30 30 chr3_random 7452784 7453394 -974887 + L1PA13 LINE L1 788 1397 -6177 317 264 54 62 chr3_random 7453480 7453609 -974672 + L1PA13 LINE L1 2054 2181 -5400 286 279 0 0 chr3_random 7453854 7453922 -974359 + L1PA13 LINE L1 2183 2250 -5331 510 241 28 35 chr3_random 7454033 7454178 -974103 + MLT1A2 LTR MaLR 86 229 -145 1977 150 39 28 chr3_random 7454418 7454778 -973503 + THE1B LTR MaLR 1 364 0 315 167 0 0 chr3_random 7457030 7457096 -971185 + (CA)n Simple_repeat Simple_repeat 1 66 0 248 294 206 0 chr3_random 7457268 7457404 -970877 - MIR3 SINE MIR -1 207 44 6581 21 0 0 chr3_random 7457511 7458269 -970012 + L1PA3 LINE L1 5393 6150 -5 229 368 26 0 chr3_random 7458829 7458905 -969376 - L2 LINE L2 -13 3259 3182 856 237 100 55 chr3_random 7459072 7459401 -968880 - MER2 DNA MER2_type -1 344 1 553 137 0 89 chr3_random 7459474 7459598 -968683 - AluJb SINE Alu 0 312 200 251 281 52 21 chr3_random 7459642 7459738 -968543 + MLT1K LTR MaLR 139 237 -351 488 288 12 25 chr3_random 7459967 7460130 -968151 + MLT1E LTR MaLR 1 161 -432 380 316 98 0 chr3_random 7460208 7460341 -967940 - MER69 DNA AcHobo -2080 446 301 2297 243 42 57 chr3_random 7460451 7460728 -967553 - L1M4 LINE L1 -2796 3350 3070 1510 223 0 0 chr3_random 7460728 7461024 -967257 - AluJb SINE Alu -16 296 1 2297 243 42 57 chr3_random 7461024 7461884 -966397 - L1M4 LINE L1 -3076 3070 2230 3188 160 35 0 chr3_random 7461893 7462442 -965839 + HSMAR2 DNA Mariner 14 581 -721 8631 192 3 11 chr3_random 7462460 7463989 -964292 - LTR27-int LTR ERV1 -2714 4377 2862 805 218 51 117 chr3_random 7464005 7464538 -963743 + LTR28 LTR ERV1 1 1305 -148 3084 302 57 38 chr3_random 7464688 7466054 -962227 - LTR27-int LTR ERV1 -6070 2849 1458 1953 241 11 14 chr3_random 7466389 7466824 -961457 - LTR27-int LTR ERV1 -6657 434 1 1420 258 84 18 chr3_random 7466825 7467320 -960961 - LTR27 LTR ERV1 -147 489 3 3751 188 28 6 chr3_random 7467320 7468109 -960172 + L1MA9 LINE L1 4410 5215 -931 4477 169 34 53 chr3_random 7468116 7468512 -959769 + L1MA9 LINE L1 5254 5656 -656 2915 178 64 3 chr3_random 7468512 7469109 -959172 - LTR24C LTR ERV1 0 635 3 4477 169 34 53 chr3_random 7469109 7469365 -958916 + L1MA9 LINE L1 5656 5915 -397 2520 65 0 0 chr3_random 7469365 7469671 -958610 + AluY SINE Alu 1 306 -5 4477 169 34 53 chr3_random 7469671 7470014 -958267 + L1MA9 LINE L1 5915 6231 -81 188 360 60 20 chr3_random 7472122 7472222 -956059 - MIR SINE MIR -114 148 45 1955 183 17 33 chr3_random 7472341 7472761 -955520 + MLT2D LTR ERVL 1 413 -1 33 85 0 0 chr3_random 7473722 7473804 -954477 + AT_rich Low_complexity Low_complexity 1 82 0 976 196 29 0 chr3_random 7474834 7475038 -953243 + L1MA3 LINE L1 5897 6106 -199 815 216 114 26 chr3_random 7475886 7476113 -952168 + AluJo SINE Alu 1 247 -65 932 210 109 16 chr3_random 7476835 7477083 -951198 - MLT1C LTR MaLR 0 467 197 1727 162 28 17 chr3_random 7477245 7477535 -950746 - AluSx SINE Alu -17 295 3 3780 204 29 23 chr3_random 7477551 7478042 -950239 - L1MA9 LINE L1 -28 6284 5798 288 120 0 0 chr3_random 7478042 7478092 -950189 + (TG)n Simple_repeat Simple_repeat 1 50 0 3780 204 29 23 chr3_random 7478092 7478207 -950074 - L1MA9 LINE L1 -514 5798 5685 2303 137 11 16 chr3_random 7478207 7478573 -949708 - THE1B LTR MaLR 0 364 1 3780 204 29 23 chr3_random 7478573 7478891 -949390 - L1MA9 LINE L1 -627 5685 5353 1245 194 39 53 chr3_random 7478885 7479181 -949100 - L1MA9 LINE L1 -1008 5138 4846 * 1599 186 21 12 chr3_random 7479181 7479514 -948767 + MER44D DNA MER2_type 3 608 -1 1245 194 39 53 chr3_random 7479514 7479577 -948704 - L1MA9 LINE L1 -1300 4846 4784 722 160 38 0 chr3_random 7479578 7479709 -948572 - MLT1C LTR MaLR -331 136 1 243 303 90 16 chr3_random 7480432 7480554 -947727 + MIR SINE MIR 58 188 -74 2230 157 3 3 chr3_random 7480588 7480952 -947329 - THE1B LTR MaLR 0 364 1 1640 227 73 33 chr3_random 7480976 7481467 -946814 + MER39 LTR ERV1 1 706 -1 32 26 0 0 chr3_random 7482149 7482188 -946093 + AT_rich Low_complexity Low_complexity 1 39 0 1002 219 137 44 chr3_random 7483000 7483433 -944848 - L1MD3 LINE L1 -7 8035 7572 1004 179 0 108 chr3_random 7483435 7483703 -944578 - AluJo SINE Alu -4 308 70 1694 307 82 34 chr3_random 7483854 7485175 -943106 - L1MC4a LINE L1 -370 7438 6054 182 368 78 29 chr3_random 7485582 7485824 -942457 + L2 LINE L2 1647 1900 -1414 185 311 0 16 chr3_random 7485851 7485912 -942369 + MER5A DNA MER1_type 4 63 -126 408 279 133 6 chr3_random 7486032 7486190 -942091 - MLT1J LTR MaLR -279 232 55 2218 113 0 6 chr3_random 7486210 7486521 -941760 + AluSc SINE Alu 1 309 0 1372 225 23 48 chr3_random 7486580 7486706 -941575 - MLT1A2 LTR MaLR -32 342 214 5681 156 93 13 chr3_random 7486706 7487846 -940435 + Tigger3b DNA MER2_type 1 1231 0 1372 225 23 48 chr3_random 7487846 7488001 -940280 - MLT1A2 LTR MaLR -160 214 57 2128 131 73 14 chr3_random 7488001 7488345 -939936 + THE1B LTR MaLR 1 364 0 11198 88 28 1 chr3_random 7488345 7489884 -938397 + THE1B-int LTR MaLR 1 1580 0 2031 137 73 14 chr3_random 7489884 7490228 -938053 + THE1B LTR MaLR 1 364 0 1372 225 23 48 chr3_random 7490228 7490294 -937987 - MLT1A2 LTR MaLR -314 60 1 487 341 97 68 chr3_random 7490368 7491249 -937032 + L2 LINE L2 2376 3272 0 518 281 171 45 chr3_random 7492728 7493062 -935219 - L2 LINE L2 0 3313 2938 1931 162 24 30 chr3_random 7493070 7493189 -935092 - Tigger1 DNA MER2_type -1957 461 343 252 0 0 0 chr3_random 7493189 7493217 -935064 + (GA)n Simple_repeat Simple_repeat 1 28 0 1931 162 24 30 chr3_random 7493217 7493468 -934813 - Tigger1 DNA MER2_type -2075 343 93 4579 186 37 10 chr3_random 7495883 7496031 -932250 - ERVL LTR ERVL -3927 1837 1694 1663 218 19 11 chr3_random 7496031 7496393 -931888 + MLT1A1 LTR MaLR 1 365 0 4579 186 37 10 chr3_random 7496393 7497115 -931166 - ERVL LTR ERVL -4070 1694 944 602 293 42 14 chr3_random 7498276 7498488 -929793 + MLT1I LTR MaLR 1 218 -191 459 0 0 0 chr3_random 7498791 7498842 -929439 + (TG)n Simple_repeat Simple_repeat 2 52 0 354 338 71 31 chr3_random 7498844 7499233 -929048 + L2 LINE L2 2503 2969 -344 965 269 67 60 chr3_random 7499375 7499913 -928368 + MER34 LTR ERV1 1 542 0 2736 76 3 0 chr3_random 7500003 7500357 -927924 - THE1A LTR MaLR 0 355 1 327 85 0 0 chr3_random 7500769 7500816 -927465 + (TG)n Simple_repeat Simple_repeat 2 48 0 1535 204 52 25 chr3_random 7500842 7501205 -927076 - MLT1B LTR MaLR -8 382 10 216 0 0 0 chr3_random 7502057 7502081 -926200 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1757 323 162 24 chr3_random 7502473 7503854 -924427 + L2 LINE L2 1110 2681 -633 233 311 172 38 chr3_random 7503925 7504292 -923989 + L2 LINE L2 2843 3258 -55 23 68 0 0 chr3_random 7504808 7504852 -923429 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3_random 7505278 7505300 -922981 + AT_rich Low_complexity Low_complexity 1 22 0 261 257 27 0 chr3_random 7506135 7506209 -922072 + L1ME LINE L1 5521 5596 -525 21 0 0 0 chr3_random 7507030 7507051 -921230 + AT_rich Low_complexity Low_complexity 1 21 0 1480 215 90 16 chr3_random 7507097 7507465 -920816 - MSTD LTR MaLR -1 395 1 22 70 0 0 chr3_random 7507477 7507520 -920761 + AT_rich Low_complexity Low_complexity 1 43 0 273 156 0 0 chr3_random 7507752 7507797 -920484 + MER58 DNA MER1_type 61 105 -236 510 190 60 0 chr3_random 7507897 7508013 -920268 + MER58 DNA MER1_type 138 260 -81 2197 149 22 0 chr3_random 7508731 7509086 -919195 - THE1B LTR MaLR -1 363 1 1778 156 10 3 chr3_random 7509928 7510223 -918058 + AluSg SINE Alu 1 297 -13 700 58 0 39 chr3_random 7511249 7511352 -916929 - L1P LINE L1 -979 5167 5069 * 3735 23 2 0 chr3_random 7511338 7511774 -916507 + L1PA4 LINE L1 5684 6120 -35 429 366 26 5 chr3_random 7511874 7512068 -916213 - MER69 DNA AcHobo -2325 201 4 21 57 0 0 chr3_random 7513292 7513327 -914954 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3_random 7513453 7513475 -914806 + AT_rich Low_complexity Low_complexity 1 22 0 1188 188 96 53 chr3_random 7514062 7514439 -913842 + MSTD LTR MaLR 4 396 0 994 165 148 74 chr3_random 7515338 7515737 -912544 + MLT2B1 LTR ERVL 1 479 -41 198 0 0 0 chr3_random 7515797 7515819 -912462 + (TG)n Simple_repeat Simple_repeat 2 23 0 1965 127 3 0 chr3_random 7516213 7516520 -911761 - AluSx SINE Alu 0 308 1 1652 145 39 75 chr3_random 7518050 7518437 -909844 - THE1C LTR MaLR -2 373 1 181 208 189 19 chr3_random 7518488 7518541 -909740 - L2 LINE L2 -1 3312 3251 * 680 283 66 18 chr3_random 7518508 7518734 -909547 - MIR SINE MIR -24 238 2 6015 24 4 0 chr3_random 7521067 7521772 -906509 - L1PA3 LINE L1 0 6155 5448 805 196 76 5 chr3_random 7523682 7523866 -904415 + LTR50 LTR ERVL 1 197 -598 4687 161 33 25 chr3_random 7524084 7524585 -903696 - L1MA8 LINE L1 -2 6289 5776 216 0 0 0 chr3_random 7524585 7524609 -903672 + (TG)n Simple_repeat Simple_repeat 1 24 0 4687 161 33 25 chr3_random 7524609 7525018 -903263 - L1MA8 LINE L1 -515 5776 5372 519 230 198 32 chr3_random 7525018 7525235 -903046 + LTR50 LTR ERVL 542 794 -1 1914 156 44 19 chr3_random 7525400 7525766 -902515 - THE1C LTR MaLR 0 375 1 322 342 32 13 chr3_random 7525774 7525929 -902352 + MLT1K LTR MaLR 107 264 -324 180 213 0 0 chr3_random 7526044 7526105 -902176 + GA-rich Low_complexity Low_complexity 2 62 0 1340 113 32 44 chr3_random 7527802 7528050 -900231 - L1MA1 LINE L1 -3 6299 6055 207 0 0 0 chr3_random 7528110 7528133 -900148 + (TTG)n Simple_repeat Simple_repeat 2 24 0 214 237 53 26 chr3_random 7528324 7528400 -899881 + MIR SINE MIR 183 260 -2 1850 94 43 4 chr3_random 7528437 7528692 -899589 + AluSx SINE Alu 31 295 -17 27 62 0 0 chr3_random 7529239 7529287 -898994 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr3_random 7529338 7529359 -898922 + AT_rich Low_complexity Low_complexity 1 21 0 1284 174 4 25 chr3_random 7531188 7531429 -896852 + AluSx SINE Alu 64 299 -13 505 281 79 83 chr3_random 7531547 7532231 -896050 - HAL1 LINE L1 -95 2412 1732 405 0 0 0 chr3_random 7532422 7532467 -895814 + (CA)n Simple_repeat Simple_repeat 2 46 0 4283 181 11 30 chr3_random 7532740 7533616 -894665 + L1MA4 LINE L1 5431 6290 -10 27 0 0 0 chr3_random 7533620 7533647 -894634 + AT_rich Low_complexity Low_complexity 1 27 0 316 292 90 38 chr3_random 7534257 7534545 -893736 - L2 LINE L2 -1282 2032 1730 235 304 0 0 chr3_random 7534832 7534888 -893393 + (TATG)n Simple_repeat Simple_repeat 4 59 0 384 267 0 10 chr3_random 7535407 7535501 -892780 - MLT1D LTR MaLR 0 505 413 245 132 0 0 chr3_random 7535501 7535539 -892742 + MADE1 DNA Mariner 2 39 -41 480 250 55 43 chr3_random 7535542 7535706 -892575 - MLT1D LTR MaLR -339 166 1 29746 115 22 58 chr3_random 7535749 7542128 -886153 + L1PA7 LINE L1 18 6151 -3 1379 221 74 2 chr3_random 7542123 7542517 -885764 + L1MD3 LINE L1 7562 7983 -12 * 1135 195 89 45 chr3_random 7542598 7542957 -885324 - THE1C LTR MaLR 0 375 1 236 100 25 0 chr3_random 7543074 7543114 -885167 + (TAGA)n Simple_repeat Simple_repeat 3 43 0 32 0 0 0 chr3_random 7543260 7543292 -884989 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr3_random 7544302 7544323 -883958 + (T)n Simple_repeat Simple_repeat 1 21 0 302 229 169 0 chr3_random 7544549 7544632 -883649 - MIR SINE MIR -150 112 16 4666 244 24 26 chr3_random 7545262 7547201 -881080 + L1PA16 LINE L1 2182 4127 -3457 6545 190 38 21 chr3_random 7547213 7549659 -878622 + L1PA16 LINE L1 5108 7595 -9 2076 165 64 25 chr3_random 7550211 7550714 -877567 - MLT2A2 LTR ERVL 0 554 1 203 179 0 0 chr3_random 7551458 7551497 -876784 + (TATG)n Simple_repeat Simple_repeat 2 40 0 22 80 0 0 chr3_random 7552628 7552678 -875603 + AT_rich Low_complexity Low_complexity 1 50 0 27 0 0 0 chr3_random 7552769 7552796 -875485 + AT_rich Low_complexity Low_complexity 1 27 0 603 305 112 13 chr3_random 7554046 7554279 -874002 + MIR SINE MIR 2 257 -5 180 0 0 0 chr3_random 7555042 7555062 -873219 + (TTG)n Simple_repeat Simple_repeat 2 21 0 351 113 0 0 chr3_random 7555687 7555740 -872541 + (TG)n Simple_repeat Simple_repeat 2 54 0 180 135 0 0 chr3_random 7555835 7555872 -872409 + (CA)n Simple_repeat Simple_repeat 2 38 0 595 246 129 53 chr3_random 7556238 7556701 -871580 - MLT1G LTR MaLR 0 590 6 385 308 80 65 chr3_random 7557694 7558045 -870236 + MLT1H LTR MaLR 12 367 -182 894 183 114 117 chr3_random 7558153 7558547 -869734 + MSTD LTR MaLR 4 396 0 657 137 29 0 chr3_random 7558661 7558763 -869518 + U6 snRNA snRNA 1 105 -2 812 135 0 21 chr3_random 7558766 7558907 -869374 + L1MA2 LINE L1 6167 6304 0 492 305 144 0 chr3_random 7558921 7559088 -869193 - MLT1H LTR MaLR -328 221 31 1103 264 78 38 chr3_random 7559130 7559555 -868726 - L1ME3A LINE L1 -104 6135 5694 306 0 0 0 chr3_random 7559613 7559647 -868634 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 2100 89 39 0 chr3_random 7559652 7559934 -868347 - AluSx SINE Alu -19 293 1 1084 169 0 6 chr3_random 7559936 7560119 -868162 - AluJb SINE Alu -9 303 122 813 268 78 38 chr3_random 7560136 7560557 -867724 - L1ME3A LINE L1 -1713 4502 4065 344 325 53 21 chr3_random 7560569 7560757 -867524 - L1ME3A LINE L1 -4278 2118 1925 534 287 53 8 chr3_random 7561660 7561925 -866356 + L1ME3A LINE L1 5675 5951 -219 34 24 0 0 chr3_random 7562208 7562249 -866032 + AT_rich Low_complexity Low_complexity 1 41 0 463 270 54 27 chr3_random 7564882 7565067 -863214 - L1ME3A LINE L1 -266 5912 5723 531 277 104 73 chr3_random 7565151 7565505 -862776 + MLT1J2 LTR MaLR 21 385 -65 725 154 67 2 chr3_random 7565697 7565833 -862448 + MER20 DNA MER1_type 73 219 0 336 339 129 6 chr3_random 7566545 7566716 -861565 + MIR SINE MIR 51 242 -20 431 192 154 10 chr3_random 7566933 7567037 -861244 - L2 LINE L2 -3 3310 3192 25 65 0 0 chr3_random 7570201 7570247 -858034 + AT_rich Low_complexity Low_complexity 1 46 0 751 192 0 0 chr3_random 7771057 7771182 -657099 - MER1B DNA MER1_type -172 125 1 1907 183 67 7 chr3_random 7773154 7773286 -654995 + L1MB3 LINE L1 5516 5639 -544 390 21 0 0 chr3_random 7773286 7773333 -654948 + (CA)n Simple_repeat Simple_repeat 2 48 0 1907 183 67 7 chr3_random 7773333 7773649 -654632 + L1MB3 LINE L1 5639 5991 -192 560 257 174 9 chr3_random 7773774 7773992 -654289 - MIR SINE MIR -7 255 2 205 195 0 0 chr3_random 7774077 7774118 -654163 + (TTAA)n Simple_repeat Simple_repeat 3 43 0 217 359 7 35 chr3_random 7774304 7774446 -653835 + L2 LINE L2 2987 3124 -148 247 328 78 17 chr3_random 7774522 7774638 -653643 + L2 LINE L2 3144 3266 -6 496 316 92 15 chr3_random 7774670 7774891 -653390 - MIR SINE MIR -21 241 8 338 338 90 15 chr3_random 7775570 7775771 -652510 - MIR SINE MIR -30 232 17 1089 171 4 1 chr3_random 7776032 7782652 -645629 + ALR/Alpha Satellite centromeric 1 6639 -52 417 151 0 0 chr3_random 7782761 7782847 -645434 + (CATTC)n Satellite Satellite 4 89 0 972 158 0 0 chr3_random 7782868 7783382 -644899 + (CATTC)n Satellite Satellite 1 514 0 1149 167 2 4 chr3_random 7783404 7783976 -644305 + (CATTC)n Satellite Satellite 1 570 0 846 118 0 0 chr3_random 7783995 7784147 -644134 + (CATTC)n Satellite Satellite 4 155 0 672 186 0 0 chr3_random 7784170 7784347 -643934 + (CATTC)n Satellite Satellite 4 180 0 723 169 0 0 chr3_random 7784379 7784556 -643725 + (CATTC)n Satellite Satellite 3 179 0 792 154 0 0 chr3_random 7784596 7784771 -643510 + (CATTC)n Satellite Satellite 5 179 0 453 178 0 0 chr3_random 7784793 7784911 -643370 + (CATTC)n Satellite Satellite 2 119 0 242 222 0 0 chr3_random 7784943 7784997 -643284 + (CATTT)n Simple_repeat Simple_repeat 2 55 0 1056 152 0 4 chr3_random 7785003 7785472 -642809 + (CATTC)n Satellite Satellite 1 467 0 675 177 0 0 chr3_random 7785492 7785656 -642625 + (CATTC)n Satellite Satellite 1 164 0 699 168 0 0 chr3_random 7785680 7785847 -642434 + (CATTC)n Satellite Satellite 4 170 0 852 162 0 0 chr3_random 7785879 7786216 -642065 + (CATTC)n Satellite Satellite 1 337 0 642 191 0 0 chr3_random 7786257 7786591 -641690 + (CATTC)n Satellite Satellite 1 334 0 771 168 0 0 chr3_random 7786616 7786861 -641420 + (CATTC)n Satellite Satellite 1 245 0 893 136 6 0 chr3_random 7786877 7787054 -641227 + (CATTC)n Satellite Satellite 2 179 0 843 178 0 0 chr3_random 7787082 7787710 -640571 + (CATTC)n Satellite Satellite 1 628 0 761 153 6 0 chr3_random 7787732 7787908 -640373 + (CATTC)n Satellite Satellite 3 179 0 859 117 11 11 chr3_random 7787958 7788138 -640143 + (CATTC)n Satellite Satellite 1 180 0 1041 158 0 4 chr3_random 7788149 7789261 -639020 + (CATTC)n Satellite Satellite 1 1107 0 819 188 0 0 chr3_random 7789279 7789611 -638670 + (CATTC)n Satellite Satellite 1 332 0 878 168 4 0 chr3_random 7789629 7790164 -638117 + (CATTC)n Satellite Satellite 1 537 0 501 172 0 0 chr3_random 7790182 7790304 -637977 + (CATTC)n Satellite Satellite 4 125 0 963 129 0 0 chr3_random 7790315 7790493 -637788 + (CATTC)n Satellite Satellite 2 179 0 831 163 0 0 chr3_random 7790527 7790869 -637412 + (CATTC)n Satellite Satellite 1 342 0 939 134 0 0 chr3_random 7790884 7791063 -637218 + (CATTC)n Satellite Satellite 1 179 0 761 162 0 4 chr3_random 7791082 7791339 -636942 + (CATTC)n Satellite Satellite 1 255 0 897 155 2 11 chr3_random 7791390 7791852 -636429 + (CATTC)n Satellite Satellite 1 458 0 960 159 0 0 chr3_random 7791886 7792195 -636086 + (CATTC)n Satellite Satellite 1 309 0 771 161 0 0 chr3_random 7792206 7792386 -635895 + (CATTC)n Satellite Satellite 1 180 0 399 195 0 0 chr3_random 7792438 7792556 -635725 + (CATTC)n Satellite Satellite 3 120 0 658 179 6 6 chr3_random 7792576 7792755 -635526 + (CATTC)n Satellite Satellite 1 179 0 891 161 1 7 chr3_random 7792766 7793529 -634752 + (CATTC)n Satellite Satellite 1 759 0 939 151 0 0 chr3_random 7793562 7793921 -634360 + (CATTC)n Satellite Satellite 1 359 0 417 165 0 0 chr3_random 7793954 7794051 -634230 + (CATTC)n Satellite Satellite 4 100 0 756 175 0 7 chr3_random 7794104 7794801 -633480 + (CATTC)n Satellite Satellite 1 691 0 828 153 2 2 chr3_random 7794820 7795336 -632945 + (CATTC)n Satellite Satellite 1 516 0 492 175 0 0 chr3_random 7795354 7795480 -632801 + (CATTC)n Satellite Satellite 4 129 0 879 171 0 0 chr3_random 7795492 7796355 -631926 + (CATTC)n Satellite Satellite 1 863 0 918 181 1 4 chr3_random 7796371 7797143 -631138 + (CATTC)n Satellite Satellite 1 770 0 861 136 0 0 chr3_random 7797167 7797344 -630937 + (CATTC)n Satellite Satellite 4 180 0 504 171 6 28 chr3_random 7797367 7797548 -630733 + (CATTC)n Satellite Satellite 4 180 0 906 183 0 6 chr3_random 7797559 7797918 -630363 + (CATTC)n Satellite Satellite 2 358 0 792 156 0 0 chr3_random 7797963 7798143 -630138 + (CATTC)n Satellite Satellite 1 180 0 822 159 2 2 chr3_random 7798175 7798689 -629592 + (CATTC)n Satellite Satellite 1 514 0 927 155 0 0 chr3_random 7798705 7798954 -629327 + (CATTC)n Satellite Satellite 1 249 0 1017 164 2 10 chr3_random 7798998 7800092 -628189 + (CATTC)n Satellite Satellite 1 1085 0 666 184 0 0 chr3_random 7800139 7800313 -627968 + (CATTC)n Satellite Satellite 4 177 0 762 184 2 2 chr3_random 7800361 7800961 -627320 + (CATTC)n Satellite Satellite 1 600 0 1224 132 0 2 chr3_random 7800986 7801841 -626440 + (CATTC)n Satellite Satellite 1 852 0 655 191 2 2 chr3_random 7801866 7802315 -625966 + (CATTC)n Satellite Satellite 1 449 0 924 178 0 3 chr3_random 7802331 7803045 -625236 + (CATTC)n Satellite Satellite 1 712 0 993 156 0 8 chr3_random 7803087 7803606 -624675 + (CATTC)n Satellite Satellite 1 515 0 900 162 0 3 chr3_random 7803649 7803996 -624285 + (CATTC)n Satellite Satellite 1 346 0 798 156 0 0 chr3_random 7804063 7804236 -624045 + (CATTC)n Satellite Satellite 2 174 0 894 158 0 8 chr3_random 7804247 7804601 -623680 + (CATTC)n Satellite Satellite 1 352 0 768 200 3 0 chr3_random 7804614 7805016 -623265 + (CATTC)n Satellite Satellite 1 403 0 832 161 3 3 chr3_random 7805094 7805451 -622830 + (CATTC)n Satellite Satellite 1 357 0 456 250 0 0 chr3_random 7805434 7805610 -622671 + (CTATT)n Simple_repeat Simple_repeat 5 180 0 * 732 162 0 0 chr3_random 7805584 7805751 -622530 + (CATTC)n Satellite Satellite 4 170 0 588 196 0 0 chr3_random 7805771 7806011 -622270 + (CATTC)n Satellite Satellite 1 240 0 840 164 0 0 chr3_random 7806044 7806466 -621815 + (CATTC)n Satellite Satellite 1 422 0 673 188 4 2 chr3_random 7806496 7807034 -621247 + (CATTC)n Satellite Satellite 1 539 0 564 205 0 0 chr3_random 7807052 7807218 -621063 + (CATTC)n Satellite Satellite 4 169 0 776 166 0 3 chr3_random 7807274 7807594 -620687 + (CATTC)n Satellite Satellite 1 319 0 858 140 0 0 chr3_random 7807635 7807814 -620467 + (CATTC)n Satellite Satellite 1 179 0 972 155 2 0 chr3_random 7807846 7808259 -620022 + (CATTC)n Satellite Satellite 1 414 0 831 155 0 0 chr3_random 7808280 7808789 -619492 + (CATTC)n Satellite Satellite 1 509 0 315 234 0 0 chr3_random 7808813 7808958 -619323 + (CATTC)n Satellite Satellite 5 149 0 888 152 0 15 chr3_random 7808975 7809441 -618840 + (CATTC)n Satellite Satellite 1 458 0 723 181 0 0 chr3_random 7809460 7809871 -618410 + (CATTC)n Satellite Satellite 1 411 0 747 182 0 0 chr3_random 7809889 7810395 -617886 + (CATTC)n Satellite Satellite 1 506 0 759 190 0 0 chr3_random 7810443 7810805 -617476 + (CATTC)n Satellite Satellite 1 362 0 582 189 0 0 chr3_random 7810828 7811003 -617278 + (CATTC)n Satellite Satellite 4 178 0 533 193 0 28 chr3_random 7811054 7811235 -617046 + (CATTC)n Satellite Satellite 5 180 0 729 172 0 0 chr3_random 7811269 7811449 -616832 + (CATTC)n Satellite Satellite 1 180 0 840 144 0 0 chr3_random 7811479 7811652 -616629 + (CATTC)n Satellite Satellite 2 174 0 663 166 0 0 chr3_random 7811663 7811820 -616461 + (CATTC)n Satellite Satellite 1 157 0 879 142 0 0 chr3_random 7811831 7812007 -616274 + (CATTC)n Satellite Satellite 4 179 0 843 147 0 0 chr3_random 7812031 7812208 -616073 + (CATTC)n Satellite Satellite 4 180 0 657 181 0 0 chr3_random 7812256 7812433 -615848 + (CATTC)n Satellite Satellite 4 180 0 972 190 0 6 chr3_random 7812481 7813128 -615153 + (CATTC)n Satellite Satellite 1 643 0 891 139 0 0 chr3_random 7813153 7813333 -614948 + (CATTC)n Satellite Satellite 1 180 0 855 152 0 0 chr3_random 7813381 7813812 -614469 + (CATTC)n Satellite Satellite 1 431 0 783 144 0 0 chr3_random 7813826 7813993 -614288 + (CATTC)n Satellite Satellite 4 170 0 859 152 6 3 chr3_random 7814013 7814362 -613919 + (CATTC)n Satellite Satellite 1 350 0 979 103 6 6 chr3_random 7814377 7814551 -613730 + (CATTC)n Satellite Satellite 1 174 0 963 124 0 0 chr3_random 7814615 7814792 -613489 + (CATTC)n Satellite Satellite 4 180 0 291 194 0 0 chr3_random 7814808 7814901 -613380 + (CATTC)n Satellite Satellite 2 94 0 782 185 0 14 chr3_random 7814923 7815292 -612989 + (CATTC)n Satellite Satellite 1 364 0 810 153 0 0 chr3_random 7815310 7815487 -612794 + (CATTC)n Satellite Satellite 4 180 0 771 161 0 0 chr3_random 7815527 7815707 -612574 + (CATTC)n Satellite Satellite 1 180 0 429 222 0 0 chr3_random 7815730 7815906 -612375 + (CATTC)n Satellite Satellite 4 179 0 885 155 0 0 chr3_random 7815942 7816279 -612002 + (CATTC)n Satellite Satellite 1 337 0 396 215 0 0 chr3_random 7816324 7816482 -611799 + (CATTC)n Satellite Satellite 3 160 0 891 149 0 0 chr3_random 7816512 7816927 -611354 + (CATTC)n Satellite Satellite 1 415 0 807 180 0 0 chr3_random 7816942 7817256 -611025 + (CATTC)n Satellite Satellite 1 314 0 827 164 0 8 chr3_random 7817350 7817962 -610319 + (CATTC)n Satellite Satellite 1 607 0 819 175 3 0 chr3_random 7817990 7818306 -609975 + (CATTC)n Satellite Satellite 1 317 0 938 147 2 2 chr3_random 7818323 7818765 -609516 + (CATTC)n Satellite Satellite 1 442 0 402 190 0 0 chr3_random 7818783 7818899 -609382 + (CATTC)n Satellite Satellite 4 119 0 792 171 2 2 chr3_random 7818919 7819434 -608847 + (CATTC)n Satellite Satellite 1 515 0 522 203 0 0 chr3_random 7819452 7819595 -608686 + (CATTC)n Satellite Satellite 3 145 0 729 182 0 0 chr3_random 7819630 7819942 -608339 + (CATTC)n Satellite Satellite 1 312 0 772 137 6 28 chr3_random 7819982 7820164 -608117 + (CATTC)n Satellite Satellite 3 180 0 794 162 6 0 chr3_random 7820181 7820360 -607921 + (CATTC)n Satellite Satellite 1 180 0 876 145 2 0 chr3_random 7820408 7820822 -607459 + (CATTC)n Satellite Satellite 1 415 0 666 189 0 0 chr3_random 7820833 7821013 -607268 + (CATTC)n Satellite Satellite 1 180 0 474 171 0 0 chr3_random 7821029 7821152 -607129 + (CATTC)n Satellite Satellite 2 124 0 833 151 0 20 chr3_random 7821174 7821433 -606848 + (CATTC)n Satellite Satellite 1 253 0 396 128 0 0 chr3_random 7821470 7821548 -606733 + (CATTC)n Satellite Satellite 3 80 0 1082 157 1 12 chr3_random 7821586 7822429 -605852 + (CATTC)n Satellite Satellite 1 833 0 852 154 2 0 chr3_random 7822442 7822783 -605498 + (CATTC)n Satellite Satellite 1 341 0 831 156 4 9 chr3_random 7822868 7823416 -604865 + (CATTC)n Satellite Satellite 1 544 0 627 193 0 0 chr3_random 7823432 7823740 -604541 + (CATTC)n Satellite Satellite 1 308 0 1125 96 0 0 chr3_random 7823768 7823946 -604335 + (CATTC)n Satellite Satellite 3 180 0 885 137 0 0 chr3_random 7823962 7824130 -604151 + (CATTC)n Satellite Satellite 2 169 0 805 131 6 6 chr3_random 7824188 7824356 -603925 + (CATTC)n Satellite Satellite 3 170 0 785 185 2 0 chr3_random 7824376 7824828 -603453 + (CATTC)n Satellite Satellite 1 453 0 643 169 6 6 chr3_random 7824851 7825029 -603252 + (CATTC)n Satellite Satellite 3 180 0 807 145 0 12 chr3_random 7825040 7825454 -602827 + (CATTC)n Satellite Satellite 1 409 0 479 204 0 6 chr3_random 7825503 7825679 -602602 + (CATTC)n Satellite Satellite 5 179 0 759 173 0 0 chr3_random 7825695 7826055 -602226 + (CATTC)n Satellite Satellite 1 360 0 768 159 0 0 chr3_random 7826088 7826373 -601908 + (CATTC)n Satellite Satellite 1 285 0 993 170 1 4 chr3_random 7826424 7828703 -599578 + (CATTC)n Satellite Satellite 1 2272 0 671 185 3 1 chr3_random 7828733 7829532 -598749 + (CATTC)n Satellite Satellite 1 800 0 211 176 0 0 chr3_random 7829564 7829598 -598683 + polypyrimidine Low_complexity Low_complexity 2 35 0 1094 99 0 17 chr3_random 7829599 7829780 -598501 + (CATTC)n Satellite Satellite 3 180 0 639 206 0 0 chr3_random 7829795 7829975 -598306 + (CATTC)n Satellite Satellite 1 180 0 1257 73 0 0 chr3_random 7829986 7830164 -598117 + (CATTC)n Satellite Satellite 2 179 0 930 126 0 0 chr3_random 7830213 7830380 -597901 + (CATTC)n Satellite Satellite 4 170 0 750 189 0 0 chr3_random 7830409 7830589 -597692 + (CATTC)n Satellite Satellite 1 180 0 840 175 0 2 chr3_random 7830624 7831065 -597216 + (CATTC)n Satellite Satellite 1 439 0 744 178 0 0 chr3_random 7831030 7831210 -597071 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 * 663 213 0 0 chr3_random 7831212 7831550 -596731 + (CATTC)n Satellite Satellite 1 338 0 951 156 0 0 chr3_random 7831550 7831729 -596552 + (CACTC)n Simple_repeat Simple_repeat 1 179 0 856 182 2 2 chr3_random 7831730 7832157 -596124 + (CATTC)n Satellite Satellite 1 427 0 747 179 2 0 chr3_random 7832193 7832661 -595620 + (CATTC)n Satellite Satellite 1 469 0 * 900 133 0 0 chr3_random 7832639 7832674 -595607 + (CATTC)n Satellite Satellite 1 215 0 900 133 0 0 chr3_random 7832674 7832854 -595427 + (CATTC)n Satellite Satellite 1 180 0 966 151 4 0 chr3_random 7832998 7833454 -594827 + (CATTC)n Satellite Satellite 1 458 0 1023 166 1 0 chr3_random 7833491 7834261 -594020 + (CATTC)n Satellite Satellite 1 771 0 945 151 2 0 chr3_random 7834305 7834844 -593437 + (CATTC)n Satellite Satellite 1 540 0 870 167 0 0 chr3_random 7834864 7835044 -593237 + (CATTC)n Satellite Satellite 1 180 0 978 130 0 0 chr3_random 7835080 7835316 -592965 + (CATTC)n Satellite Satellite 1 236 0 921 139 0 0 chr3_random 7835332 7835505 -592776 + (CATTC)n Satellite Satellite 4 176 0 768 176 0 0 chr3_random 7835534 7835704 -592577 + (CATTC)n Satellite Satellite 1 170 0 236 172 0 16 chr3_random 7835715 7835779 -592502 + (CATTC)n Satellite Satellite 2 64 0 1083 164 1 1 chr3_random 7835795 7836481 -591800 + (CATTC)n Satellite Satellite 1 686 0 1026 183 0 9 chr3_random 7836520 7837455 -590826 + (CATTC)n Satellite Satellite 1 926 0 558 198 0 0 chr3_random 7837473 7837645 -590636 + (CATTC)n Satellite Satellite 4 175 0 605 194 6 0 chr3_random 7837693 7837868 -590413 + (CATTC)n Satellite Satellite 4 179 0 183 204 0 0 chr3_random 7837892 7837941 -590340 + (CATTC)n Satellite Satellite 4 52 0 1065 148 0 0 chr3_random 7837964 7838399 -589882 + (CATTC)n Satellite Satellite 1 435 0 856 128 9 5 chr3_random 7838417 7838630 -589651 + (CATTC)n Satellite Satellite 1 214 0 840 168 0 0 chr3_random 7838632 7838805 -589476 + (CACTC)n Simple_repeat Simple_repeat 5 177 0 754 170 4 4 chr3_random 7838763 7839017 -589264 + (CATTC)n Satellite Satellite 1 254 0 * 930 130 0 0 chr3_random 7839051 7839228 -589053 + (CATTC)n Satellite Satellite 4 180 0 594 184 0 0 chr3_random 7839278 7839457 -588824 + (CATTC)n Satellite Satellite 1 179 0 840 153 0 0 chr3_random 7839478 7839648 -588633 + (CATTC)n Satellite Satellite 1 170 0 1003 150 1 1 chr3_random 7839665 7840652 -587629 + (CATTC)n Satellite Satellite 1 987 0 786 170 0 0 chr3_random 7840716 7840967 -587314 + (CATTC)n Satellite Satellite 1 251 0 869 179 0 2 chr3_random 7841031 7841649 -586632 + (CATTC)n Satellite Satellite 1 616 0 891 161 0 0 chr3_random 7841679 7841859 -586422 + (CACTC)n Simple_repeat Simple_repeat 1 180 0 693 194 0 0 chr3_random 7841879 7842059 -586222 + (CATTC)n Simple_repeat Simple_repeat 1 180 0 248 191 0 0 chr3_random 7842080 7842122 -586159 - Alu SINE Alu -34 267 226 912 156 0 0 chr3_random 7842166 7842346 -585935 + (CATTC)n Simple_repeat Simple_repeat 1 180 0 1011 166 0 3 chr3_random 7842351 7842711 -585570 + (CACTC)n Simple_repeat Simple_repeat 1 360 0 696 206 0 0 chr3_random 7842719 7843006 -585275 + (CATTC)n Satellite Satellite 1 287 0 903 183 0 11 chr3_random 7843026 7843468 -584813 + (CATTC)n Satellite Satellite 1 437 0 935 176 3 0 chr3_random 7843480 7844188 -584093 + ALR/Alpha Satellite centromeric 1 710 -28 6671 66 3 3 chr3_random 7844228 7845364 -582917 - L1PA4 LINE L1 -3 6152 5028 995 172 5 8 chr3_random 7845374 7851157 -577124 + ALR/Alpha Satellite centromeric 1 6148 -3961 3292 30 0 8 chr3_random 7851157 7851556 -576725 + L1PA3 LINE L1 5760 6155 0 995 172 5 8 chr3_random 7851556 7855457 -572824 + ALR/Alpha Satellite centromeric 6148 10057 -52 266 49 0 24 chr3_random 7855458 7855499 -572782 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 3559 60 0 2 chr3_random 7855499 7855967 -572314 - L1PA3 LINE L1 -24 6131 5665 * 7815 48 7 0 chr3_random 7855964 7857017 -571264 + L1P LINE L1 2931 3990 -2156 1012 162 4 2 chr3_random 7857017 7859085 -569196 + ALR/Alpha Satellite centromeric 1 2072 -1 957 177 4 2 chr3_random 7859191 7862626 -565655 + ALR/Alpha Satellite centromeric 1 3441 -45 1162 164 5 2 chr3_random 7862726 7879010 -549271 - ALR/Alpha Satellite centromeric 0 16335 1 3605 88 0 0 chr3_random 7879011 7879499 -548782 + L1PA3 LINE L1 5657 6144 -11 1108 166 3 1 chr3_random 7879535 7891878 -536403 - ALR/Alpha Satellite centromeric 0 12375 1 1027 188 2 0 chr3_random 7891892 7892559 -535722 - ALR/Alpha Satellite centromeric -8 668 1 39969 63 23 2 chr3_random 7892573 7898593 -529688 - L1PA3 LINE L1 -3 6152 1 1117 167 4 1 chr3_random 7898595 7900554 -527727 + ALR/Alpha Satellite centromeric 1 1965 -8 1046 175 4 1 chr3_random 7900656 7903982 -524299 - ALR/Alpha Satellite centromeric 0 3334 1 6679 66 2 14 chr3_random 7903992 7905128 -523153 + L1PA4 LINE L1 5028 6152 -3 241 146 0 0 chr3_random 7905169 7905210 -523071 - ALR/Alpha Satellite centromeric -115 57 17 1110 170 5 2 chr3_random 7905319 7931141 -497140 - ALR/Alpha Satellite centromeric 0 25903 1 1116 163 3 1 chr3_random 7931241 7942592 -485689 + ALR/Alpha Satellite centromeric 1 11373 -15 1063 176 8 5 chr3_random 7942607 7943203 -485078 + ALR/Alpha Satellite centromeric 1 597 0 25885 77 4 3 chr3_random 7943314 7946789 -481492 - L1P LINE L1 -2667 3479 1 1190 166 6 2 chr3_random 7946790 7969767 -458514 - ALR/Alpha Satellite centromeric -1 23077 1 1105 164 4 1 chr3_random 7969869 7979537 -448744 + ALR/Alpha Satellite centromeric 1 9693 -74 33724 73 2 1 chr3_random 7979538 7983987 -444294 + L1P LINE L1 1 4453 -1693 1000 185 6 3 chr3_random 7984090 7985418 -442863 - ALR/Alpha Satellite centromeric 0 1332 1 1140 171 5 1 chr3_random 7985429 7993602 -434679 - ALR/Alpha Satellite centromeric 0 8208 1 1127 161 3 2 chr3_random 7993613 8006080 -422201 - ALR/Alpha Satellite centromeric 0 12482 1 40040 58 24 1 chr3_random 8006080 8012102 -416179 + L1PA3 LINE L1 1 6159 0 1173 167 8 1 chr3_random 8012154 8020303 -407978 + ALR/Alpha Satellite centromeric 1 8203 0 1105 168 4 2 chr3_random 8020320 8041617 -386664 + ALR/Alpha Satellite centromeric 1 21342 -74 41004 69 3 1 chr3_random 8041618 8047759 -380522 + L1PA3 LINE L1 1 6148 -7 363 248 9 0 chr3_random 8047759 8047872 -380409 + ALR/Alpha Satellite centromeric 50 163 -8 * 1156 163 4 1 chr3_random 8047778 8068164 -360117 + ALR/Alpha Satellite centromeric 1 20447 -15 1135 170 6 1 chr3_random 8068179 8089864 -338417 + ALR/Alpha Satellite centromeric 1 21780 -7 1156 168 5 1 chr3_random 8089877 8099332 -328949 + ALR/Alpha Satellite centromeric 1 9496 -60 1148 171 5 1 chr3_random 8099432 8114938 -313343 + ALR/Alpha Satellite centromeric 1 15573 -7 1135 171 5 2 chr3_random 8114951 8122907 -305374 + ALR/Alpha Satellite centromeric 1 7983 -44 876 176 0 7 chr3_random 8123213 8123625 -304656 + (GAATG)n Satellite Satellite 1 408 0 900 133 0 0 chr3_random 8123628 8123777 -304504 + (GAATG)n Satellite Satellite 1 329 0 900 133 0 0 chr3_random 8123777 8123957 -304324 + (GAATG)n Satellite Satellite 1 180 0 609 186 0 0 chr3_random 8123987 8124214 -304067 + (GAATG)n Satellite Satellite 1 227 0 714 175 0 0 chr3_random 8124256 8124433 -303848 + (GAATG)n Satellite Satellite 4 180 0 919 179 2 2 chr3_random 8124469 8124901 -303380 + (GAATG)n Satellite Satellite 1 432 0 918 162 0 0 chr3_random 8124902 8125128 -303153 + (GAGTG)n Simple_repeat Simple_repeat 1 226 0 525 208 0 0 chr3_random 8125081 8125291 -302990 + (GAATG)n Satellite Satellite 1 210 0 * 654 211 0 0 chr3_random 8125306 8125486 -302795 + (GAATG)n Satellite Satellite 1 180 0 326 206 0 0 chr3_random 8125487 8125560 -302721 + (GAGTG)n Simple_repeat Simple_repeat 2 74 0 892 174 0 9 chr3_random 8125561 8125997 -302284 + (GAATG)n Satellite Satellite 1 431 0 723 192 0 0 chr3_random 8126032 8126209 -302072 + (GAATG)n Satellite Satellite 4 180 0 852 136 0 0 chr3_random 8126236 8126398 -301883 + (GAATG)n Satellite Satellite 4 165 0 1200 118 0 14 chr3_random 8126416 8126964 -301317 + (GAATG)n Satellite Satellite 1 712 0 223 102 20 20 chr3_random 8126968 8127017 -301264 + (GGAAA)n Simple_repeat Simple_repeat 1 49 0 680 188 3 1 chr3_random 8127049 8127844 -300437 + (GAATG)n Satellite Satellite 1 796 0 792 173 0 0 chr3_random 8127873 8128052 -300229 + (GAATG)n Satellite Satellite 2 180 0 968 156 3 5 chr3_random 8128092 8128647 -299634 + (GAATG)n Satellite Satellite 1 728 0 912 131 0 0 chr3_random 8128647 8128822 -299459 + (GAATG)n Satellite Satellite 1 175 0 495 215 0 0 chr3_random 8128937 8129114 -299167 + (GAATG)n Satellite Satellite 4 180 0 957 141 0 0 chr3_random 8129132 8129449 -298832 + (GAATG)n Satellite Satellite 1 317 0 1032 146 1 1 chr3_random 8129467 8130204 -298077 + (GAATG)n Satellite Satellite 1 737 0 735 162 0 0 chr3_random 8130238 8130523 -297758 + (GAATG)n Satellite Satellite 1 285 0 738 176 0 2 chr3_random 8130556 8131114 -297167 + (GAATG)n Satellite Satellite 1 556 0 795 159 2 9 chr3_random 8131162 8131807 -296474 + (GAATG)n Satellite Satellite 1 639 0 908 170 2 0 chr3_random 8131818 8132255 -296026 + (GAATG)n Satellite Satellite 1 438 0 745 153 6 6 chr3_random 8132275 8132452 -295829 + (GAATG)n Satellite Satellite 4 180 0 864 143 0 0 chr3_random 8132486 8132654 -295627 + (GAATG)n Satellite Satellite 2 169 0 1314 137 0 0 chr3_random 8132670 8133030 -295251 + (GAATG)n Satellite Satellite 1 360 0 627 183 0 0 chr3_random 8133064 8133239 -295042 + (GAATG)n Satellite Satellite 2 176 0 852 162 4 9 chr3_random 8133255 8133803 -294478 + (GAATG)n Satellite Satellite 1 544 0 864 154 0 0 chr3_random 8133888 8134199 -294082 + (GAATG)n Satellite Satellite 1 311 0 1082 139 2 5 chr3_random 8134247 8134883 -293398 + (GAATG)n Satellite Satellite 4 808 0 675 160 0 0 chr3_random 8134934 8135090 -293191 + (GAATG)n Satellite Satellite 4 159 0 396 128 0 0 chr3_random 8135128 8135206 -293075 + (GAATG)n Satellite Satellite 3 80 0 713 143 0 29 chr3_random 8135275 8135450 -292831 + (GAATG)n Satellite Satellite 4 173 0 654 175 0 0 chr3_random 8135514 8135691 -292590 + (GAATG)n Satellite Satellite 3 179 0 888 166 2 0 chr3_random 8135708 8136288 -291993 + (GAATG)n Satellite Satellite 1 581 0 794 162 6 0 chr3_random 8136307 8136486 -291795 + (GAATG)n Satellite Satellite 1 180 0 778 128 0 48 chr3_random 8136506 8136694 -291587 + (GAATG)n Satellite Satellite 2 180 0 762 179 0 0 chr3_random 8136713 8137025 -291256 + (GAATG)n Satellite Satellite 1 312 0 825 160 0 12 chr3_random 8137060 8137479 -290802 + (GAATG)n Satellite Satellite 1 413 0 699 188 0 0 chr3_random 8137500 8137872 -290409 + (GAATG)n Satellite Satellite 1 372 0 938 136 3 2 chr3_random 8137890 8138332 -289949 + (GAATG)n Satellite Satellite 1 622 0 786 178 3 0 chr3_random 8138349 8138665 -289616 + (GAATG)n Satellite Satellite 1 317 0 848 164 0 8 chr3_random 8138693 8139305 -288976 + (GAATG)n Satellite Satellite 1 606 0 318 171 0 0 chr3_random 8139399 8139469 -288812 + (GAATG)n Satellite Satellite 5 74 0 903 161 0 0 chr3_random 8139519 8140133 -288148 + (GAATG)n Satellite Satellite 1 614 0 873 190 0 0 chr3_random 8140158 8140910 -287371 + (GAATG)n Satellite Satellite 1 752 0 792 156 0 0 chr3_random 8140933 8141113 -287168 + (GAATG)n Satellite Satellite 1 180 0 810 153 0 0 chr3_random 8141153 8141330 -286951 + (GAATG)n Satellite Satellite 4 180 0 782 185 0 14 chr3_random 8141348 8141717 -286564 + (GAATG)n Satellite Satellite 1 364 0 291 194 0 0 chr3_random 8141739 8141832 -286449 + (GAATG)n Satellite Satellite 2 94 0 963 124 0 0 chr3_random 8141848 8142025 -286256 + (GAATG)n Satellite Satellite 4 180 0 889 148 4 6 chr3_random 8142056 8142583 -285698 + (GAATG)n Satellite Satellite 1 705 0 783 144 0 0 chr3_random 8142603 8142770 -285511 + (GAATG)n Satellite Satellite 4 170 0 855 156 0 0 chr3_random 8142798 8143220 -285061 + (GAATG)n Satellite Satellite 1 422 0 899 113 0 27 chr3_random 8143268 8143453 -284828 + (GAATG)n Satellite Satellite 1 180 0 1104 165 1 5 chr3_random 8143478 8144144 -284137 + (GAATG)n Satellite Satellite 4 840 0 495 159 0 0 chr3_random 8144162 8144275 -284006 + (GAATG)n Satellite Satellite 3 115 0 1224 89 0 0 chr3_random 8144327 8144507 -283774 + (GAATG)n Satellite Satellite 1 180 0 1221 124 0 11 chr3_random 8144519 8145102 -283179 + (GAATG)n Satellite Satellite 3 751 0 259 222 0 0 chr3_random 8145118 8145181 -283100 + (GAATG)n Satellite Satellite 2 64 0 618 183 0 0 chr3_random 8145192 8145361 -282920 + (GAATG)n Satellite Satellite 2 170 0 723 174 0 0 chr3_random 8145383 8145561 -282720 + (GAATG)n Satellite Satellite 2 179 0 762 167 0 0 chr3_random 8145572 8145752 -282529 + (GAATG)n Satellite Satellite 1 180 0 762 161 0 0 chr3_random 8145775 8145949 -282332 + (GAATG)n Satellite Satellite 4 177 0 528 210 0 0 chr3_random 8145996 8146163 -282118 + (GAATG)n Satellite Satellite 4 170 0 886 136 2 10 chr3_random 8146226 8146643 -281638 + (GAATG)n Satellite Satellite 1 413 0 712 170 2 13 chr3_random 8146658 8147111 -281170 + (GAATG)n Satellite Satellite 1 448 0 948 147 0 0 chr3_random 8147127 8147376 -280905 + (GAATG)n Satellite Satellite 1 249 0 822 158 2 2 chr3_random 8147392 8147906 -280375 + (GAATG)n Satellite Satellite 1 514 0 792 156 0 0 chr3_random 8147938 8148118 -280163 + (GAATG)n Satellite Satellite 1 180 0 960 162 0 4 chr3_random 8148168 8148525 -279756 + (GAATG)n Satellite Satellite 2 532 0 462 182 6 28 chr3_random 8148543 8148724 -279557 + (GAATG)n Satellite Satellite 4 180 0 789 150 0 0 chr3_random 8148747 8148927 -279354 + (GAATG)n Satellite Satellite 1 180 0 897 177 1 0 chr3_random 8148938 8149710 -278571 + (GAATG)n Satellite Satellite 1 773 0 856 171 0 6 chr3_random 8149726 8150544 -277737 + (GAATG)n Satellite Satellite 1 813 0 492 175 0 0 chr3_random 8150556 8150682 -277599 + (GAATG)n Satellite Satellite 4 129 0 882 152 2 2 chr3_random 8150700 8151216 -277065 + (GAATG)n Satellite Satellite 1 516 0 786 181 0 7 chr3_random 8151235 8151942 -276339 + (GAATG)n Satellite Satellite 1 702 0 576 186 0 0 chr3_random 8152010 8152187 -276094 + (GAATG)n Satellite Satellite 4 180 0 897 161 0 0 chr3_random 8152225 8152675 -275606 + (GAATG)n Satellite Satellite 1 450 0 912 155 1 7 chr3_random 8152687 8153388 -274893 + (GAATG)n Satellite Satellite 1 875 0 450 216 0 0 chr3_random 8153401 8153577 -274704 + (GAATG)n Satellite Satellite 4 179 0 939 166 0 0 chr3_random 8153645 8154140 -274141 + (GAATG)n Satellite Satellite 1 495 0 918 163 0 0 chr3_random 8154174 8154530 -273751 + (GAATG)n Satellite Satellite 1 356 0 753 161 6 0 chr3_random 8154558 8154915 -273366 + (GAATG)n Satellite Satellite 1 359 0 939 158 0 0 chr3_random 8154931 8155263 -273018 + (GAATG)n Satellite Satellite 1 332 0 219 190 0 0 chr3_random 8155342 8155400 -272881 + (GAATG)n Satellite Satellite 2 59 0 446 220 6 0 chr3_random 8155416 8155593 -272688 + (GAATG)n Satellite Satellite 3 180 0 996 116 0 0 chr3_random 8155615 8155787 -272494 + (GAATG)n Satellite Satellite 4 175 0 828 150 0 0 chr3_random 8155831 8156348 -271933 + (GAATG)n Satellite Satellite 1 517 0 726 184 0 0 chr3_random 8156386 8156565 -271716 + (GAATG)n Satellite Satellite 1 179 0 702 179 0 0 chr3_random 8156600 8156908 -271373 + (GAATG)n Satellite Satellite 1 308 0 786 162 0 0 chr3_random 8156920 8157099 -271182 + (GAATG)n Satellite Satellite 2 180 0 807 160 3 16 chr3_random 8157140 8157510 -270771 + (GAATG)n Satellite Satellite 1 364 0 384 184 0 0 chr3_random 8157549 8157652 -270629 + (GAATG)n Satellite Satellite 3 105 0 795 152 0 0 chr3_random 8157665 8157843 -270438 + (GAATG)n Satellite Satellite 2 179 0 615 183 0 0 chr3_random 8157879 8158059 -270222 + (GAATG)n Satellite Satellite 1 180 0 972 128 0 0 chr3_random 8158094 8158273 -270008 + (GAATG)n Satellite Satellite 2 180 0 831 167 0 0 chr3_random 8158284 8158641 -269640 + (GAATG)n Satellite Satellite 1 357 0 984 124 0 0 chr3_random 8158660 8158838 -269443 + (GAATG)n Satellite Satellite 2 179 0 480 180 0 0 chr3_random 8158849 8158971 -269310 + (GAATG)n Satellite Satellite 4 125 0 845 170 4 0 chr3_random 8158989 8159524 -268757 + (GAATG)n Satellite Satellite 1 537 0 819 185 0 0 chr3_random 8159542 8159874 -268407 + (GAATG)n Satellite Satellite 1 332 0 981 139 0 2 chr3_random 8159892 8160251 -268030 + (GAATG)n Satellite Satellite 1 538 0 942 157 0 10 chr3_random 8160303 8161005 -267276 + (GAATG)n Satellite Satellite 1 873 0 859 117 11 11 chr3_random 8161045 8161225 -267056 + (GAATG)n Satellite Satellite 1 180 0 749 153 6 0 chr3_random 8161275 8161451 -266830 + (GAATG)n Satellite Satellite 3 179 0 870 172 0 0 chr3_random 8161474 8161912 -266369 + (GAATG)n Satellite Satellite 1 438 0 576 191 0 0 chr3_random 8161928 8162106 -266175 + (GAATG)n Satellite Satellite 3 180 0 893 136 6 0 chr3_random 8162134 8162311 -265970 + (GAATG)n Satellite Satellite 2 179 0 771 164 0 0 chr3_random 8162327 8162572 -265709 + (GAATG)n Satellite Satellite 1 245 0 621 191 0 0 chr3_random 8162597 8162931 -265350 + (GAATG)n Satellite Satellite 1 334 0 894 157 0 0 chr3_random 8162972 8163294 -264987 + (GAATG)n Satellite Satellite 1 322 0 720 162 0 0 chr3_random 8163326 8163493 -264788 + (GAATG)n Satellite Satellite 4 170 0 696 171 0 0 chr3_random 8163517 8163681 -264600 + (GAATG)n Satellite Satellite 1 164 0 1035 144 0 3 chr3_random 8163701 8164170 -264111 + (GAATG)n Satellite Satellite 1 647 0 242 222 0 0 chr3_random 8164176 8164230 -264051 + (AAATG)n Simple_repeat Simple_repeat 2 55 0 453 178 0 0 chr3_random 8164262 8164380 -263901 + (GAATG)n Satellite Satellite 2 119 0 792 154 0 0 chr3_random 8164402 8164577 -263704 + (GAATG)n Satellite Satellite 5 179 0 723 169 0 0 chr3_random 8164617 8164794 -263487 + (GAATG)n Satellite Satellite 3 179 0 807 167 0 0 chr3_random 8164806 8165114 -263167 + (GAATG)n Satellite Satellite 1 308 0 1161 151 1 10 chr3_random 8165131 8165931 -262350 + (GAATG)n Satellite Satellite 1 969 0 972 128 0 0 chr3_random 8165931 8166110 -262171 + (GAATG)n Satellite Satellite 1 179 0 831 161 0 0 chr3_random 8166210 8166390 -261891 + (GAATG)n Satellite Satellite 1 180 0 849 139 0 0 chr3_random 8166425 8166598 -261683 + (GAATG)n Satellite Satellite 3 175 0 711 169 0 0 chr3_random 8166615 8166792 -261489 + (GAATG)n Satellite Satellite 4 180 0 897 170 1 1 chr3_random 8166810 8168080 -260201 + (GAATG)n Satellite Satellite 1 1270 0 852 141 0 26 chr3_random 8168118 8168596 -259685 + (GAATG)n Satellite Satellite 1 465 0 1296 118 1 0 chr3_random 8168621 8169633 -258648 + (GAATG)n Satellite Satellite 3 1190 0 912 128 0 0 chr3_random 8169644 8169823 -258458 + (GAATG)n Satellite Satellite 2 180 0 936 126 0 0 chr3_random 8169840 8170014 -258267 + (GAATG)n Satellite Satellite 1 174 0 252 172 0 0 chr3_random 8170029 8170087 -258194 + (GAATG)n Satellite Satellite 3 60 0 714 178 0 0 chr3_random 8170127 8170290 -257991 + (GAATG)n Satellite Satellite 5 167 0 282 185 19 0 chr3_random 8170310 8170364 -257917 + Alu SINE Alu 234 288 -14 672 179 0 0 chr3_random 8170415 8170566 -257715 + (GAGTG)n Simple_repeat Simple_repeat 2 152 0 1023 139 0 0 chr3_random 8170567 8170747 -257534 + (GAATG)n Simple_repeat Simple_repeat 1 180 0 192 238 0 0 chr3_random 8170748 8170811 -257470 + (CAAAT)n Simple_repeat Simple_repeat 3 65 0 483 229 0 0 chr3_random 8170828 8171003 -257278 + (GAATG)n Satellite Satellite 5 179 0 912 144 0 0 chr3_random 8171020 8171193 -257088 + (GAATG)n Satellite Satellite 5 177 0 195 100 0 0 chr3_random 8171198 8171228 -257053 + (CAAAT)n Simple_repeat Simple_repeat 3 32 0 945 179 0 0 chr3_random 8171229 8171553 -256728 + (GAATG)n Satellite Satellite 1 324 0 287 222 56 0 chr3_random 8171564 8171636 -256645 + AluJ/FRAM SINE Alu 225 300 -2 1007 176 2 3 chr3_random 8171649 8172255 -256026 + (GAATG)n Satellite Satellite 1 604 0 265 222 32 0 chr3_random 8172266 8172329 -255952 + Alu SINE Alu 224 288 -13 675 155 0 18 chr3_random 8172329 8172497 -255784 + (GAATG)n Simple_repeat Simple_repeat 2 166 0 918 151 0 0 chr3_random 8172520 8172692 -255589 + (GAGTG)n Simple_repeat Simple_repeat 2 173 0 852 164 0 0 chr3_random 8172706 8172883 -255398 + (GAATG)n Simple_repeat Simple_repeat 1 177 0 319 175 48 0 chr3_random 8172905 8172968 -255313 + AluJ/FRAM SINE Alu 225 290 -12 910 106 0 43 chr3_random 8172994 8173182 -255099 + (GAATG)n Satellite Satellite 1 180 0 1062 143 3 0 chr3_random 8173196 8173499 -254782 + (GAATG)n Satellite Satellite 1 304 0 259 210 48 0 chr3_random 8173512 8173574 -254707 + AluJ/FRAM SINE Alu 226 290 -12 741 180 0 0 chr3_random 8173596 8173768 -254513 + (GAGTG)n Simple_repeat Simple_repeat 4 175 0 960 134 0 0 chr3_random 8173776 8173947 -254334 + (GAATG)n Simple_repeat Simple_repeat 5 175 0 373 143 48 0 chr3_random 8173958 8174021 -254260 + AluS SINE Alu 224 289 -12 224 149 0 21 chr3_random 8174021 8174068 -254213 + (GAATG)n Simple_repeat Simple_repeat 1 46 0 881 146 0 27 chr3_random 8174068 8174253 -254028 + (GAGTG)n Simple_repeat Simple_repeat 1 180 0 609 188 0 0 chr3_random 8174276 8174420 -253861 + (GAGTG)n Simple_repeat Simple_repeat 4 147 0 21 36 0 0 chr3_random 8224460 8224488 -203793 + AT_rich Low_complexity Low_complexity 1 28 0 185 401 57 6 chr3_random 8224565 8224722 -203559 - MIR SINE MIR -49 213 49 34 42 0 0 chr3_random 8225070 8225118 -203163 + AT_rich Low_complexity Low_complexity 1 48 0 1808 166 3 3 chr3_random 8225280 8225576 -202705 + AluSx SINE Alu 1 296 -16 203 361 0 0 chr3_random 8225819 8225880 -202401 + L3 LINE CR1 1512 1572 -5 26 30 0 0 chr3_random 8225979 8226012 -202269 + AT_rich Low_complexity Low_complexity 1 33 0 1648 177 13 41 chr3_random 8226314 8226630 -201651 - AluJo SINE Alu -5 307 1 1510 180 61 0 chr3_random 8227223 8227501 -200780 + AluJb SINE Alu 5 299 -13 280 235 59 59 chr3_random 8227830 8227949 -200332 + L1MC5 LINE L1 7806 7924 -37 1868 171 0 7 chr3_random 8228009 8228313 -199968 + AluSx SINE Alu 1 302 -10 414 0 0 0 chr3_random 8228365 8228411 -199870 + (CA)n Simple_repeat Simple_repeat 1 46 0 774 181 0 0 chr3_random 8229224 8229357 -198924 + AluJo SINE Alu 1 133 -169 1084 126 13 0 chr3_random 8229371 8229530 -198751 - AluSg/x SINE Alu -8 302 142 889 198 57 6 chr3_random 8229530 8229707 -198574 + AluJo SINE Alu 125 310 -2 1188 151 0 0 chr3_random 8229755 8229934 -198347 + AluSg/x SINE Alu 132 310 0 548 298 112 63 chr3_random 8230287 8230584 -197697 + L1MC4a LINE L1 5446 5727 -394 1716 176 3 14 chr3_random 8230584 8230880 -197401 + AluJo SINE Alu 4 296 -16 548 298 112 63 chr3_random 8230880 8231124 -197157 + L1MC4a LINE L1 5727 6016 -105 304 246 67 67 chr3_random 8232471 8232605 -195676 - MIR SINE MIR -39 223 90 22 35 0 0 chr3_random 8232697 8232726 -195555 + AT_rich Low_complexity Low_complexity 1 29 0 222 302 94 27 chr3_random 8233585 8233734 -194547 - MIR SINE MIR -54 208 50 365 280 83 6 chr3_random 8233954 8234111 -194170 - MARNA DNA Mariner -88 498 330 1114 166 8 1 chr3_random 8234304 8236324 -191957 - ALR/Alpha Satellite centromeric -8 2034 1 8278 45 0 0 chr3_random 8236324 8237370 -190911 - L1P LINE L1 -2481 3665 2620 477 227 0 23 chr3_random 8237370 8237381 -190900 - ALR/Alpha Satellite centromeric -46 125 115 13756 48 0 0 chr3_random 8237381 8239868 -188413 + L1PA3 LINE L1 3667 6155 0 477 227 0 23 chr3_random 8239868 8239984 -188297 - ALR/Alpha Satellite centromeric -56 115 1 * 1188 165 4 5 chr3_random 8239871 8250057 -178224 - ALR/Alpha Satellite centromeric 0 10183 1 16318 43 1 0 chr3_random 8250106 8252886 -175395 - L1PA3 LINE L1 -3 6152 3372 3354 76 2 0 chr3_random 8252886 8253349 -174932 + L1P LINE L1 2365 2828 -3318 1216 171 6 2 chr3_random 8253349 8264483 -163798 - ALR/Alpha Satellite centromeric -1 11179 1 917 177 9 0 chr3_random 8264494 8264731 -163550 - ALR/Alpha Satellite centromeric -1 239 1 1186 178 5 4 chr3_random 8264744 8269268 -159013 - ALR/Alpha Satellite centromeric 0 4529 1 1155 162 4 1 chr3_random 8269281 8275285 -152996 - ALR/Alpha Satellite centromeric -1 6023 1 2910 0 0 0 chr3_random 8275285 8275596 -152685 + AluYa5 SINE Alu 1 311 0 995 179 0 0 chr3_random 8275615 8275832 -152449 - ALR/Alpha Satellite centromeric 0 217 1 670 238 21 3 chr3_random 8275958 8276241 -152040 - ALR/Alpha Satellite centromeric -1 288 1 1717 147 13 0 chr3_random 8276241 8276548 -151733 + AluYa5 SINE Alu 1 311 0 1244 162 4 0 chr3_random 8276567 8279333 -148948 - ALR/Alpha Satellite centromeric 0 2776 1 1151 42 21 0 chr3_random 8279334 8279478 -148803 - L1P LINE L1 -1932 4214 4068 25 51 0 0 chr3_random 8279478 8279517 -148764 + AT_rich Low_complexity Low_complexity 1 39 0 35237 48 25 3 chr3_random 8279518 8284883 -143398 - L1PA2 LINE L1 -3 6152 663 6890 59 6 1 chr3_random 8284887 8285797 -142484 - L1P LINE L1 -2065 4081 3168 6306 42 1 1 chr3_random 8285796 8286580 -141701 + L1PA3 LINE L1 4215 4998 -1148 * 7399 40 1 0 chr3_random 8286680 8287877 -140404 + L1PA3 LINE L1 4943 6155 0 1144 154 4 0 chr3_random 8287886 8292705 -135576 - ALR/Alpha Satellite centromeric 0 4837 1 6375 36 15 1 chr3_random 8292705 8293509 -134772 - L1P LINE L1 -2883 3263 2449 4288 61 4 0 chr3_random 8293509 8294061 -134220 + L1PA3 LINE L1 5597 6152 -3 1089 152 4 0 chr3_random 8294069 8295637 -132644 - ALR/Alpha Satellite centromeric 0 1574 1 1144 154 5 2 chr3_random 8295648 8297634 -130647 - ALR/Alpha Satellite centromeric 0 1993 1 1130 172 3 1 chr3_random 8297647 8306662 -121619 - ALR/Alpha Satellite centromeric 0 9026 1 42431 35 21 1 chr3_random 8306662 8312683 -115598 + L1HS LINE L1 11 6155 0 1052 185 4 1 chr3_random 8312718 8315583 -112698 - ALR/Alpha Satellite centromeric 0 2871 1 1170 169 5 2 chr3_random 8315599 8341956 -86325 - ALR/Alpha Satellite centromeric 0 26445 1 18003 61 4 0 chr3_random 8341960 8345101 -83180 - L1PA3 LINE L1 -2 6153 3003 28164 65 2 0 chr3_random 8345101 8349553 -78728 + L1PA3 LINE L1 1692 6152 -3 259 224 35 0 chr3_random 8349576 8349661 -78620 + MER5C DNA MER1_type 67 154 -170 1126 164 3 1 chr3_random 8349686 8353905 -74376 - ALR/Alpha Satellite centromeric 0 4230 1 1019 178 2 3 chr3_random 8353916 8355050 -73231 - ALR/Alpha Satellite centromeric 0 1132 1 40546 51 26 1 chr3_random 8355050 8361031 -67250 - L1PA2 LINE L1 -20 6135 5 1302 132 4 1 chr3_random 8361031 8374489 -53792 - ALR/Alpha Satellite centromeric 0 30713 17295 1484 75 0 0 chr3_random 8374489 8374688 -53593 - L1PA2 LINE L1 0 6155 5957 1302 132 4 1 chr3_random 8374688 8391658 -36623 - ALR/Alpha Satellite centromeric -13418 17295 1 5381 34 0 0 chr3_random 8391658 8392313 -35968 - L1P LINE L1 -852 5294 4640 * 14740 39 1 2 chr3_random 8392302 8394115 -34166 + L1P LINE L1 2815 4626 -1520 1294 123 3 0 chr3_random 8394115 8398829 -29452 - ALR/Alpha Satellite centromeric -1 4726 1 315 125 0 0 chr3_random 8398814 8398862 -29419 + U3 snRNA snRNA 1 48 -169 * 1256 124 4 1 chr3_random 8398855 8403237 -25044 - ALR/Alpha Satellite centromeric 0 4396 1 40288 56 23 2 chr3_random 8403238 8409261 -19020 - L1PA3 LINE L1 0 6155 4 1335 130 5 1 chr3_random 8409261 8428279 -2 - ALR/Alpha Satellite centromeric 0 19103 1