201 219 31 0 chr21 427 491 -34907079 + (TA)n Simple_repeat Simple_repeat 1 66 0 837 58 117 0 chr21 1071 1191 -34906379 + MER85 DNA T2_type 4 137 -2 2853 185 47 7 chr21 2915 3509 -34904061 - MER54A LTR ERVL 0 901 284 931 107 0 0 chr21 3509 3630 -34903940 + FRAM SINE Alu 28 148 -28 1990 145 14 0 chr21 4278 4568 -34903002 - AluSx SINE Alu -18 294 1 2277 101 17 0 chr21 4620 4918 -34902652 - AluSc SINE Alu -6 303 1 21 0 0 0 chr21 4982 5003 -34902567 + AT_rich Low_complexity Low_complexity 1 21 0 2357 109 3 0 chr21 5702 6014 -34901556 + AluSp SINE Alu 1 313 0 724 194 0 2 chr21 6037 6293 -34901277 + AluJ SINE Alu 2 310 -2 285 29 0 0 chr21 6307 6341 -34901229 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 301 232 143 9 chr21 6589 6701 -34900869 - MIR SINE MIR -55 207 81 604 316 16 5 chr21 7495 7682 -34899888 + MER5A DNA MER1_type 1 189 0 2295 125 0 0 chr21 8426 8738 -34898832 + AluSx SINE Alu 1 312 0 2012 123 0 0 chr21 10808 11085 -34896485 + AluSx SINE Alu 11 287 -25 225 0 0 0 chr21 11088 11113 -34896457 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr21 12159 12186 -34895384 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 401 248 80 24 chr21 12447 12572 -34894998 + MIR SINE MIR 89 220 -42 566 224 66 86 chr21 12572 12979 -34894591 + L1MC5 LINE L1 7405 7803 -158 205 291 105 12 chr21 13154 13240 -34894330 + MIR SINE MIR 148 241 -21 252 0 0 0 chr21 13307 13335 -34894235 + (CA)n Simple_repeat Simple_repeat 2 29 0 183 42 0 0 chr21 13955 13979 -34893591 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1930 122 0 11 chr21 13982 14261 -34893309 - AluSx SINE Alu -36 276 1 482 278 16 42 chr21 14321 14512 -34893058 - MIR3 SINE MIR 0 208 23 370 279 9 9 chr21 14615 14726 -34892844 + MER112 DNA MER1_type 142 252 -8 622 170 119 6 chr21 15257 15416 -34892154 - MER96B DNA MER1_type? -238 179 3 580 177 0 0 chr21 15763 15859 -34891711 - AluSg/x SINE Alu -13 296 201 425 336 93 15 chr21 15870 16194 -34891376 + L1M4 LINE L1 3479 3827 -2319 2365 148 15 10 chr21 16195 16601 -34890969 + L1PA15-16 LINE L1 5 412 -6437 6455 122 33 10 chr21 16609 17761 -34889809 + L1PA15-16 LINE L1 1307 2484 -4365 745 164 138 48 chr21 17760 17991 -34889579 + L1P LINE L1 3756 4007 -2139 2322 104 3 0 chr21 17992 18289 -34889281 + AluSx SINE Alu 1 298 -14 2453 86 0 0 chr21 18291 18594 -34888976 + AluSq SINE Alu 1 303 -10 1700 164 22 3 chr21 18594 18906 -34888664 + L1PA16 LINE L1 5828 6145 -21 657 280 46 24 chr21 18980 19309 -34888261 + L1M4 LINE L1 3816 4151 -1995 1060 248 34 43 chr21 19566 20102 -34887468 + L1ME LINE L1 2640 3170 -2976 486 211 8 39 chr21 20106 20234 -34887336 + L1ME LINE L1 3194 3317 -2829 1735 244 121 61 chr21 20238 20881 -34886689 + L1ME LINE L1 3334 3937 -2209 1982 142 10 6 chr21 20881 21192 -34886378 - AluSx SINE Alu 0 312 1 1735 244 121 61 chr21 21192 21225 -34886345 + L1ME LINE L1 3937 3967 -2179 324 0 0 0 chr21 21225 21261 -34886309 + (CA)n Simple_repeat Simple_repeat 2 37 0 1735 244 121 61 chr21 21261 21496 -34886074 + L1ME LINE L1 3967 4187 -1959 1893 147 7 26 chr21 21496 21803 -34885767 + AluJb SINE Alu 1 301 -11 1735 244 121 61 chr21 21803 22308 -34885262 + L1ME LINE L1 4187 4836 -1310 286 239 0 23 chr21 22351 22439 -34885131 + L1P LINE L1 4914 4999 -1147 826 283 44 23 chr21 22672 23108 -34884462 + L1ME LINE L1 5262 5710 -452 2079 140 3 0 chr21 23108 23408 -34884162 + AluSx SINE Alu 1 301 -11 826 283 44 23 chr21 23408 23448 -34884122 + L1ME LINE L1 5710 5748 -414 1971 152 0 7 chr21 24108 24405 -34883165 + AluJb SINE Alu 3 297 -15 5313 139 42 34 chr21 25413 26644 -34880926 + L1MA8 LINE L1 4774 6024 -267 1592 124 124 16 chr21 26644 26901 -34880669 - AluSg1 SINE Alu -24 285 1 5313 139 42 34 chr21 26901 27172 -34880398 + L1MA8 LINE L1 6024 6291 0 322 313 20 0 chr21 27303 27402 -34880168 + CT-rich Low_complexity Low_complexity 2 102 0 426 39 0 0 chr21 29263 29315 -34878255 + (TA)n Simple_repeat Simple_repeat 1 52 0 3100 93 38 23 chr21 29916 30441 -34877129 - L1P4 LINE L1 -387 5787 5255 4264 230 32 25 chr21 30456 31641 -34875929 - L1PA12 LINE L1 -6379 1202 10 897 249 22 18 chr21 32125 32354 -34875216 + MLT1H LTR MaLR 72 301 -248 1492 103 34 0 chr21 32422 32656 -34874914 - L1MA5 LINE L1 -3 6297 6056 3091 190 15 31 chr21 32663 33663 -34873907 - L1 LINE L1 -3529 3319 2333 1951 156 3 7 chr21 33663 33970 -34873600 - AluSx SINE Alu -3 309 4 3091 190 15 31 chr21 33970 34089 -34873481 - L1 LINE L1 -4515 2333 2214 1915 167 10 0 chr21 34120 34413 -34873157 - AluSx SINE Alu -14 298 3 1946 212 31 9 chr21 34414 34961 -34872609 - L1 LINE L1 -4886 1963 1405 449 191 11 0 chr21 35337 35431 -34872139 + MLT1H LTR MaLR 433 527 -22 737 171 19 171 chr21 36775 37033 -34870537 + MER20 DNA MER1_type 1 219 0 676 224 33 77 chr21 37294 37477 -34870093 - MER5A DNA MER1_type -1 188 14 371 136 61 0 chr21 37968 38034 -34869536 - U2 snRNA snRNA -118 70 1 8129 148 21 23 chr21 38733 39145 -34868425 - L1MA2 LINE L1 -72 7651 7240 2473 80 0 0 chr21 39145 39446 -34868124 - AluSp SINE Alu -12 301 1 8129 148 21 23 chr21 39446 41605 -34865965 - L1MA2 LINE L1 -483 7240 5091 2165 134 0 0 chr21 41607 41913 -34865657 - AluSx SINE Alu -6 306 1 13779 132 29 14 chr21 41923 41966 -34865604 - L1MA2 LINE L1 -3890 3675 3634 2224 110 0 0 chr21 41966 42265 -34865305 - AluSc SINE Alu -8 301 3 13779 132 29 14 chr21 42265 44612 -34862958 - L1MA2 LINE L1 -3931 3634 1249 2014 113 0 0 chr21 44631 44897 -34862673 - AluSg SINE Alu -12 298 33 267 31 0 0 chr21 45114 45146 -34862424 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 216 67 0 0 chr21 46195 46225 -34861345 + (TA)n Simple_repeat Simple_repeat 2 31 0 2215 131 0 0 chr21 46237 46549 -34861021 - AluSx SINE Alu 0 312 1 5813 94 12 16 chr21 47568 48401 -34859169 + L1PA14 LINE L1 5332 6161 0 408 309 55 10 chr21 48842 49043 -34858527 + HAL1b LINE L1 466 675 -673 7825 44 1 1 chr21 49048 50098 -34857472 + L1PA5 LINE L1 5105 6154 0 2356 83 3 3 chr21 50635 50936 -34856634 + AluSc SINE Alu 1 301 -8 209 303 0 0 chr21 52421 52487 -34855083 + L2 LINE L2 2565 2630 -684 22 0 0 0 chr21 52508 52530 -34855040 + AT_rich Low_complexity Low_complexity 1 22 0 266 211 28 0 chr21 53733 53804 -34853766 + (TA)n Simple_repeat Simple_repeat 1 73 0 2091 156 71 6 chr21 53804 54169 -34853401 - Tigger1 DNA MER2_type -1 2417 2029 5338 224 46 26 chr21 54175 54698 -34852872 - L1 LINE L1 -2596 4571 4060 2432 58 7 7 chr21 54698 54990 -34852580 - L1PA5 LINE L1 -3 6151 5860 5338 224 46 26 chr21 54990 57130 -34850440 - L1 LINE L1 -3107 4060 1690 310 269 117 111 chr21 57285 58129 -34849441 - L1 LINE L1 -6025 1143 295 513 376 28 19 chr21 58438 58757 -34848813 - L1M2 LINE L1 -6336 513 192 476 328 73 15 chr21 58760 58964 -34848606 - L1 LINE L1 -6940 228 13 6968 143 35 19 chr21 58965 60128 -34847442 - Tigger1 DNA MER2_type -1236 1182 1 333 200 0 26 chr21 60129 60244 -34847326 + (TA)n Simple_repeat Simple_repeat 2 113 0 503 201 7 0 chr21 60293 60437 -34847133 + (TA)n Simple_repeat Simple_repeat 2 146 0 206 62 31 0 chr21 60480 60512 -34847058 + (TG)n Simple_repeat Simple_repeat 2 34 0 1818 138 7 4 chr21 61474 61749 -34845821 + AluSg SINE Alu 11 286 -24 26 30 0 0 chr21 61798 61831 -34845739 + AT_rich Low_complexity Low_complexity 1 33 0 756 33 0 0 chr21 63232 63323 -34844247 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 1833 163 7 3 chr21 64365 64666 -34842904 - AluSq SINE Alu -11 302 1 256 262 0 0 chr21 65586 65647 -34841923 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2188 116 3 6 chr21 65815 66126 -34841444 - AluSg SINE Alu 0 310 1 219 36 0 0 chr21 67008 67036 -34840534 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 2636 58 0 0 chr21 68147 68458 -34839112 - AluY SINE Alu 0 311 1 235 119 17 51 chr21 69228 69287 -34838283 + CT-rich Low_complexity Low_complexity 2 58 0 22 70 0 0 chr21 69327 69370 -34838200 + AT_rich Low_complexity Low_complexity 1 43 0 2062 132 7 0 chr21 69572 69859 -34837711 - AluSx SINE Alu -23 289 1 184 203 47 0 chr21 70499 70563 -34837007 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 1135 201 23 5 chr21 70728 70942 -34836628 + MLT1C LTR MaLR 250 467 0 788 271 120 49 chr21 71699 72065 -34835505 + MER57B LTR ERV1 39 430 -4 422 211 39 39 chr21 72191 72295 -34835275 + MER94 DNA DNA 2 105 -29 493 299 86 62 chr21 72343 72879 -34834691 + L1ME LINE L1 681 1229 -4890 245 305 19 0 chr21 73528 73633 -34833937 + L1ME LINE L1 3324 3430 -2699 584 306 66 12 chr21 73826 74068 -34833502 + L1ME LINE L1 4761 5015 -1114 2400 145 94 2 chr21 74292 74686 -34832884 - MSTB1 LTR MaLR -2 430 1 23 86 0 0 chr21 74757 74815 -34832755 + AT_rich Low_complexity Low_complexity 1 58 0 306 335 57 28 chr21 74831 75288 -34832282 + L1P2 LINE L1 5285 5754 -400 1542 222 77 58 chr21 75468 76154 -34831416 + L1MC4 LINE L1 6614 7364 -678 2141 128 3 0 chr21 76654 76951 -34830619 - AluSg SINE Alu -12 298 1 24 32 0 0 chr21 77124 77155 -34830415 + AT_rich Low_complexity Low_complexity 1 31 0 399 21 0 0 chr21 78672 78720 -34828850 + (TG)n Simple_repeat Simple_repeat 1 48 0 6249 22 10 0 chr21 81876 82563 -34825007 + L1PA3 LINE L1 5461 6154 -1 1045 128 6 6 chr21 82969 83133 -34824437 + L1MA6 LINE L1 6131 6294 -6 649 194 46 23 chr21 83137 83312 -34824258 + L1ME LINE L1 5247 5425 -917 40 73 0 0 chr21 83736 83818 -34823752 + GC_rich Low_complexity Low_complexity 1 82 0 206 143 0 71 chr21 83907 83963 -34823607 + (AGGGGG)n Simple_repeat Simple_repeat 6 57 0 1510 153 36 72 chr21 84854 84994 -34822576 + AluJb SINE Alu 3 146 -166 2249 79 7 7 chr21 84994 85286 -34822284 + AluY SINE Alu 1 292 -19 1510 153 36 72 chr21 85286 85452 -34822118 + AluJb SINE Alu 146 298 -14 346 308 6 39 chr21 85914 86070 -34821500 - L2 LINE L2 -4 3309 3159 333 299 104 0 chr21 86092 86226 -34821344 + L1ME LINE L1 5625 5772 -381 2221 98 0 7 chr21 86256 86552 -34821018 + AluSg SINE Alu 1 294 -16 2198 75 43 0 chr21 86568 86846 -34820724 + AluSx SINE Alu 1 290 -22 1793 98 80 15 chr21 87268 87560 -34820010 - AluSx SINE Alu 0 309 1 2162 103 27 3 chr21 87568 87869 -34819701 - AluSq SINE Alu -5 308 1 742 306 52 20 chr21 88026 88435 -34819135 - L2 LINE L2 -158 3155 2729 183 80 0 0 chr21 88584 88609 -34818961 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1622 162 0 25 chr21 88615 88899 -34818671 + AluJo SINE Alu 1 277 -35 267 103 0 0 chr21 88900 88939 -34818631 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 426 20 0 0 chr21 88938 88989 -34818581 + (CATA)n Simple_repeat Simple_repeat 2 52 0 30 27 0 0 chr21 89114 89151 -34818419 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 89396 89417 -34818153 + AT_rich Low_complexity Low_complexity 1 21 0 889 188 11 54 chr21 89880 90066 -34817504 + MER7C DNA MER2_type 1 178 -424 802 135 95 0 chr21 90042 90168 -34817402 + MER7C DNA MER2_type 465 602 0 325 226 55 39 chr21 90327 90516 -34817054 + MIR SINE MIR 14 241 -21 21 0 0 0 chr21 90977 90998 -34816572 + AT_rich Low_complexity Low_complexity 1 21 0 220 288 152 25 chr21 92448 92566 -34815004 + L2 LINE L2 2720 2852 -462 212 286 107 43 chr21 92749 92889 -34814681 + L2 LINE L2 3159 3307 -6 2035 138 24 0 chr21 93201 93498 -34814072 + AluSq SINE Alu 1 304 -9 2423 78 7 0 chr21 93498 93805 -34813765 + AluY SINE Alu 1 309 -2 1012 149 12 48 chr21 94014 94182 -34813388 + FRAM SINE Alu 5 166 0 809 251 55 17 chr21 94568 94803 -34812767 + HAL1 LINE L1 590 833 -1674 994 121 140 29 chr21 94888 95095 -34812475 - MER30 DNA MER1_type 0 230 1 614 230 125 10 chr21 95122 95322 -34812248 + HAL1 LINE L1 903 1125 -1382 593 233 35 60 chr21 95389 95621 -34811949 + HAL1 LINE L1 1257 1482 -1025 682 234 58 31 chr21 95692 95918 -34811652 + HAL1 LINE L1 1595 1826 -681 2221 96 20 0 chr21 96211 96513 -34811057 + AluY SINE Alu 1 308 -3 207 0 0 0 chr21 96543 96566 -34811004 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3250 181 44 16 chr21 96782 97213 -34810357 + L1MA9 LINE L1 4038 4498 -1648 2163 108 0 23 chr21 97213 97519 -34810051 + AluSx SINE Alu 1 299 -13 3250 181 44 16 chr21 97519 97794 -34809776 + L1MA9 LINE L1 4498 4764 -1382 4291 169 44 55 chr21 97799 98789 -34808781 + L1MA9 LINE L1 4830 5804 -508 786 213 35 30 chr21 98789 98991 -34808579 + MER6B DNA MER2_type 4 206 -4 4291 169 44 55 chr21 98991 99458 -34808112 + L1MA9 LINE L1 5804 6274 -38 2660 32 3 3 chr21 99627 99938 -34807632 + AluY SINE Alu 1 311 0 271 156 42 73 chr21 99952 100048 -34807522 + L1M4 LINE L1 5738 5830 -344 218 250 21 0 chr21 100078 100126 -34807444 + (CA)n Simple_repeat Simple_repeat 2 50 0 2182 102 7 0 chr21 102536 102830 -34804740 - AluSx SINE Alu -16 296 1 739 319 72 39 chr21 102842 103228 -34804342 + L2 LINE L2 2579 2977 -337 2127 130 0 0 chr21 103309 103602 -34803968 - AluSx SINE Alu -19 293 1 794 176 0 0 chr21 103801 103932 -34803638 + FLAM_A SINE Alu 1 131 -2 1512 193 0 4 chr21 104080 104360 -34803210 + AluJb SINE Alu 28 306 -6 2271 72 0 10 chr21 105300 105590 -34801980 + AluY SINE Alu 1 287 -24 24 0 0 0 chr21 105961 105985 -34801585 + AT_rich Low_complexity Low_complexity 1 24 0 2063 109 0 21 chr21 107842 108127 -34799443 + AluSc SINE Alu 5 283 -26 270 0 0 0 chr21 108131 108161 -34799409 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 180 289 19 0 chr21 109062 109114 -34798456 - L2 LINE L2 -7 3306 3254 419 259 111 22 chr21 109607 109877 -34797693 + HAL1 LINE L1 1337 1630 -877 273 232 88 24 chr21 110232 110357 -34797213 + HAL1 LINE L1 2073 2205 -302 2103 131 3 0 chr21 110557 110855 -34796715 - AluSx SINE Alu -13 299 1 256 253 80 0 chr21 111013 111088 -34796482 - Cheshire DNA MER1_type 0 2420 2340 349 280 48 24 chr21 111066 111191 -34796379 - Cheshire DNA MER1_type -2132 288 161 230 208 38 19 chr21 111177 111230 -34796340 - Cheshire DNA MER1_type -2363 57 4 308 367 51 8 chr21 111363 111600 -34795970 + L2 LINE L2 1805 2051 -1263 578 278 61 33 chr21 111733 111978 -34795592 + L1MEc LINE L1 56 307 -6089 447 231 89 30 chr21 112321 112490 -34795080 + Charlie1 DNA MER1_type 47 225 -2536 491 189 31 16 chr21 112492 112619 -34794951 + Charlie1 DNA MER1_type 2627 2755 -6 530 157 41 116 chr21 115045 115128 -34792442 + Charlie5 DNA MER1_type 2427 2492 -93 1620 119 8 8 chr21 115128 115364 -34792206 - AluSq SINE Alu -22 291 56 530 157 41 116 chr21 115364 115452 -34792118 + Charlie5 DNA MER1_type 2492 2585 0 2096 148 0 0 chr21 115799 116103 -34791467 + AluSx SINE Alu 1 304 -8 2257 95 0 25 chr21 116180 116497 -34791073 - AluY SINE Alu -2 309 1 324 145 66 26 chr21 116812 116888 -34790682 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr21 117522 117543 -34790027 + AT_rich Low_complexity Low_complexity 1 21 0 1638 229 50 43 chr21 117755 118167 -34789403 + L1M4 LINE L1 3076 3484 -2662 1629 122 45 4 chr21 118167 118412 -34789158 + AluSx SINE Alu 1 255 -57 2161 121 3 19 chr21 118412 118726 -34788844 + AluSq SINE Alu 3 311 -2 1638 229 50 43 chr21 118726 118936 -34788634 + L1M4 LINE L1 3483 3703 -2443 1560 171 77 14 chr21 118938 119225 -34788345 + AluJo SINE Alu 5 309 -3 485 246 43 23 chr21 119241 119486 -34788084 + L1ME1 LINE L1 5776 6036 -128 267 270 119 24 chr21 119478 119527 -34788043 + L1MA10 LINE L1 6194 6237 -97 225 0 0 0 chr21 119527 119552 -34788018 + (TA)n Simple_repeat Simple_repeat 2 26 0 267 270 119 24 chr21 119552 119628 -34787942 + L1MA10 LINE L1 6237 6331 -3 462 232 61 32 chr21 120650 120815 -34786755 - MIR SINE MIR 0 262 69 738 228 0 13 chr21 121017 121175 -34786395 - FRAM SINE Alu -20 156 1 2121 113 3 19 chr21 121801 122110 -34785460 - AluSx SINE Alu -8 304 1 180 357 31 10 chr21 124648 124746 -34782824 + L2 LINE L2 2051 2150 -1164 564 300 76 31 chr21 124909 125403 -34782167 + L2 LINE L2 2367 2918 -354 1881 142 30 3 chr21 125474 125769 -34781801 - AluSg SINE Alu -7 303 1 1883 151 10 10 chr21 127775 128087 -34779483 + AluSx SINE Alu 1 312 0 252 267 47 23 chr21 128525 128611 -34778959 - MER5B DNA MER1_type -89 89 2 714 153 0 29 chr21 128662 128799 -34778771 + FLAM_C SINE Alu 1 133 0 249 250 100 0 chr21 129576 129656 -34777914 + Charlie5 DNA MER1_type 2 89 -2523 653 169 151 0 chr21 129657 129823 -34777747 + Charlie5 DNA MER1_type 2395 2585 -27 26 50 0 0 chr21 131751 131791 -34775779 + AT_rich Low_complexity Low_complexity 1 40 0 1280 176 5 0 chr21 133586 133796 -34773774 - AluJo SINE Alu -14 298 88 1068 157 39 57 chr21 134303 134533 -34773037 + AluJo SINE Alu 86 311 -1 1775 271 49 19 chr21 134545 135234 -34772336 + L1MC4 LINE L1 5214 5403 -743 1413 243 90 61 chr21 135503 135690 -34771880 + L1MC4 LINE L1 6443 6623 -1419 1382 119 60 14 chr21 135690 135789 -34771781 + MER30 DNA MER1_type 2 95 -135 288 0 0 0 chr21 135789 135821 -34771749 + (CA)n Simple_repeat Simple_repeat 2 33 0 1382 119 60 14 chr21 135821 135939 -34771631 + MER30 DNA MER1_type 95 229 -1 1413 243 90 61 chr21 135939 136447 -34771123 + L1MC4 LINE L1 6623 7213 -829 2002 129 3 3 chr21 136447 136774 -34770796 - AluSx SINE Alu 0 327 1 1413 243 90 61 chr21 136774 136893 -34770677 + L1MC4 LINE L1 7213 7327 -715 268 299 77 8 chr21 136941 137058 -34770512 + L1MC4 LINE L1 7410 7534 -508 297 51 0 0 chr21 137371 137410 -34770160 + (CA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr21 138389 138421 -34769149 + AT_rich Low_complexity Low_complexity 1 32 0 892 230 88 45 chr21 140415 140767 -34766803 + L1ME1 LINE L1 5694 6060 -106 251 176 0 0 chr21 140771 140822 -34766748 + L1MA10 LINE L1 6284 6334 0 388 274 211 19 chr21 141406 141614 -34765956 + MIR SINE MIR 5 252 -10 1955 148 7 0 chr21 144091 144389 -34763181 - AluSx SINE Alu -12 300 1 689 201 69 6 chr21 144508 144667 -34762903 - MER58C DNA MER1_type -2 213 45 276 315 81 44 chr21 144782 145055 -34762515 + L2 LINE L2 1935 2217 -1097 580 89 0 0 chr21 145368 145447 -34762123 + MADE1 DNA Mariner 2 80 0 184 336 67 19 chr21 145687 145791 -34761779 + L2 LINE L2 2856 2964 -349 2096 119 3 0 chr21 145835 146129 -34761441 + AluSx SINE Alu 1 295 -17 186 318 63 16 chr21 146253 146316 -34761254 + L2 LINE L2 3155 3220 -52 283 273 0 0 chr21 146759 146825 -34760745 + Charlie5 DNA MER1_type 2364 2429 -183 580 303 55 13 chr21 148278 148561 -34759009 + L2 LINE L2 2723 3017 -296 2095 123 0 10 chr21 149258 149567 -34758003 + AluSg SINE Alu 1 306 -4 21 0 0 0 chr21 150513 150534 -34757036 + AT_rich Low_complexity Low_complexity 1 21 0 1484 101 0 0 chr21 153139 153327 -34754243 + AluY SINE Alu 7 194 -117 24 0 0 0 chr21 153368 153392 -34754178 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr21 154247 154283 -34753287 + AT_rich Low_complexity Low_complexity 1 36 0 1930 143 0 23 chr21 154345 154653 -34752917 + AluJb SINE Alu 1 301 -11 202 195 0 0 chr21 155366 155408 -34752162 - MIR SINE MIR -62 146 109 1338 180 81 8 chr21 155893 156154 -34751416 + MSTB LTR MaLR 1 280 -146 1222 94 6 0 chr21 156175 156335 -34751235 - AluSq SINE Alu -19 294 134 904 143 34 7 chr21 156335 156482 -34751088 + MSTB LTR MaLR 267 417 -9 234 128 0 0 chr21 156485 156524 -34751046 + (TA)n Simple_repeat Simple_repeat 2 40 0 1294 237 134 103 chr21 157778 158171 -34749399 + MLT1E2 LTR MaLR 1 395 -231 2209 98 3 31 chr21 158171 158489 -34749081 + AluSc SINE Alu 1 309 0 1294 237 134 103 chr21 158489 158727 -34748843 + MLT1E2 LTR MaLR 395 624 -2 304 254 97 97 chr21 159355 159393 -34748177 - MIR SINE MIR -35 227 190 2093 139 0 0 chr21 159393 159703 -34747867 + AluSx SINE Alu 2 311 -1 304 254 97 97 chr21 159703 159849 -34747721 - MIR SINE MIR -71 191 43 2211 123 0 10 chr21 159966 160274 -34747296 + AluSx SINE Alu 3 307 -5 656 240 47 63 chr21 162129 162383 -34745187 + L1ME1 LINE L1 4768 5017 -1129 1279 244 29 24 chr21 162579 163392 -34744178 + L1ME1 LINE L1 5265 6165 -1 1927 145 14 3 chr21 163613 163909 -34743661 + AluSx SINE Alu 3 301 -11 1212 273 54 33 chr21 163909 164484 -34743086 + L1MDa LINE L1 1316 1902 -4638 1241 251 12 27 chr21 164484 164886 -34742684 + L1MDa LINE L1 3 398 -6142 1771 277 57 57 chr21 164939 165658 -34741912 + L1MDa LINE L1 480 1197 -5346 2159 125 3 0 chr21 165658 165955 -34741615 + AluSx SINE Alu 1 298 -14 1771 277 57 57 chr21 165955 166152 -34741418 + L1MDa LINE L1 1197 1442 -5101 1906 144 4 0 chr21 166152 166429 -34741141 + AluSx SINE Alu 1 278 -34 1771 277 57 57 chr21 166429 166541 -34741029 + L1MDa LINE L1 1442 1552 -4991 1911 204 48 8 chr21 166573 167094 -34740476 + L1MDa LINE L1 1623 2164 -4376 2530 211 75 59 chr21 167094 167682 -34739888 + Charlie1 DNA MER1_type 1443 2021 -740 1783 130 79 0 chr21 167682 167959 -34739611 + AluSx SINE Alu 11 309 -3 2530 211 75 59 chr21 167959 168089 -34739481 + Charlie1 DNA MER1_type 2021 2148 -613 243 0 0 0 chr21 168089 168116 -34739454 + (TA)n Simple_repeat Simple_repeat 2 28 0 2075 127 0 0 chr21 168116 168407 -34739163 - AluSg1 SINE Alu -18 291 1 2530 211 75 59 chr21 168407 168545 -34739025 + Charlie1 DNA MER1_type 2147 2314 -447 25 65 0 0 chr21 168678 168724 -34738846 + AT_rich Low_complexity Low_complexity 1 46 0 6139 205 35 29 chr21 168826 170269 -34737301 - Cheshire DNA MER1_type -761 1659 208 11041 146 45 9 chr21 170269 170863 -34736707 + Tigger1 DNA MER2_type 439 1010 -1408 618 174 26 9 chr21 170863 170978 -34736592 + FLAM_C SINE Alu 1 117 -16 315 0 0 0 chr21 170983 171018 -34736552 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 11041 146 45 9 chr21 171018 171427 -34736143 + Tigger1 DNA MER2_type 1013 1406 -1012 2031 128 3 0 chr21 171427 171724 -34735846 + AluSx SINE Alu 1 298 -14 11041 146 45 9 chr21 171724 172624 -34734946 + Tigger1 DNA MER2_type 1406 2418 0 21 0 0 0 chr21 173120 173141 -34734429 + AT_rich Low_complexity Low_complexity 1 21 0 1848 117 11 8 chr21 173225 173491 -34734079 + AluSq SINE Alu 1 267 -46 2032 143 0 3 chr21 173571 173871 -34733699 + AluSx SINE Alu 1 299 -13 761 140 37 104 chr21 173881 174045 -34733525 + FRAM SINE Alu 1 152 -24 1504 204 0 36 chr21 174126 174263 -34733307 + AluJo SINE Alu 1 141 -171 1939 128 7 29 chr21 174263 174569 -34733001 + AluSx SINE Alu 1 299 -13 2156 128 0 0 chr21 174572 174878 -34732692 + AluSq SINE Alu 1 306 -7 1504 204 0 36 chr21 174878 175040 -34732530 + AluJo SINE Alu 143 293 -19 337 186 51 0 chr21 175452 175511 -34732059 - L2 LINE L2 0 3313 3252 1027 155 17 100 chr21 175554 175793 -34731777 + MER20 DNA MER1_type 1 219 0 533 313 58 28 chr21 176941 177267 -34730303 + L1ME LINE L1 5483 5818 -303 209 189 0 0 chr21 177418 177455 -34730115 + (TG)n Simple_repeat Simple_repeat 2 38 0 630 219 45 19 chr21 177930 178085 -34729485 + MIR SINE MIR 17 175 -87 216 167 0 0 chr21 178325 178373 -34729197 + (TG)n Simple_repeat Simple_repeat 2 49 0 406 261 108 27 chr21 178582 178804 -34728766 + L2 LINE L2 2818 3057 -215 537 80 0 0 chr21 178844 178919 -34728651 + (CCA)n Simple_repeat Simple_repeat 3 77 0 1790 200 45 56 chr21 179016 179587 -34727983 + L1MC5 LINE L1 6955 7519 -442 326 234 71 43 chr21 179640 179781 -34727789 + L1MC5 LINE L1 7616 7760 -201 2156 113 7 7 chr21 179782 180091 -34727479 + AluSx SINE Alu 1 309 -3 246 262 0 16 chr21 180091 180152 -34727418 + MIR SINE MIR 19 78 -184 240 172 31 78 chr21 180301 180365 -34727205 - MIR SINE MIR -56 152 92 717 189 141 44 chr21 180405 180611 -34726959 + MLT1J2 LTR MaLR 2 227 -223 232 296 0 28 chr21 180740 180811 -34726759 - MIR SINE MIR -106 156 88 36 0 0 0 chr21 181157 181193 -34726377 + AT_rich Low_complexity Low_complexity 1 36 0 2549 58 0 3 chr21 181435 181746 -34725824 - AluY SINE Alu -1 310 1 25 31 0 0 chr21 182074 182106 -34725464 + AT_rich Low_complexity Low_complexity 1 32 0 2410 88 0 0 chr21 182204 182511 -34725059 + AluSx SINE Alu 1 307 -5 1996 139 7 0 chr21 182682 182976 -34724594 - AluSp SINE Alu -17 296 1 1130 67 0 0 chr21 182976 183110 -34724460 - AluY SINE Alu -177 134 1 25 31 0 0 chr21 183121 183153 -34724417 + AT_rich Low_complexity Low_complexity 1 32 0 864 89 89 0 chr21 183172 183295 -34724275 + AluSc SINE Alu 160 293 -16 342 207 0 0 chr21 183301 183359 -34724211 + MLT1J2 LTR MaLR 331 388 -2 24 53 0 0 chr21 183380 183418 -34724152 + AT_rich Low_complexity Low_complexity 1 38 0 1511 164 63 0 chr21 183424 183662 -34723908 - AluJo SINE Alu -59 253 1 1587 170 22 50 chr21 183776 184134 -34723436 + L1PA16 LINE L1 5803 6150 -16 22 56 0 0 chr21 184253 184289 -34723281 + AT_rich Low_complexity Low_complexity 1 36 0 550 302 53 26 chr21 184463 184652 -34722918 - MIR SINE MIR -49 213 20 233 352 67 9 chr21 184673 184778 -34722792 - L2 LINE L2 -9 3263 3153 2237 90 7 0 chr21 184781 185071 -34722499 + AluSg1 SINE Alu 2 293 -16 2030 121 6 19 chr21 185134 185447 -34722123 - AluSx SINE Alu -3 309 1 1616 118 134 4 chr21 185447 185701 -34721869 - AluSg SINE Alu -20 290 4 317 190 17 0 chr21 185940 185998 -34721572 - Tigger7 DNA MER2_type -37 2450 2392 188 244 0 0 chr21 186431 186472 -34721098 - MIR SINE MIR -38 224 184 1134 184 0 10 chr21 186795 187050 -34720520 + AluJb SINE Alu 92 344 0 1954 87 77 25 chr21 187611 187897 -34719673 + AluSp SINE Alu 1 301 -12 1267 272 75 40 chr21 188068 188811 -34718759 + L2 LINE L2 2549 3313 0 322 247 31 10 chr21 188899 188996 -34718574 + MLT1L LTR MaLR 509 607 -8 1625 171 20 37 chr21 189181 189480 -34718090 - AluJb SINE Alu -18 294 1 2079 98 25 14 chr21 189481 189790 -34717780 - AluSx SINE Alu 0 312 1 2084 143 7 0 chr21 189824 190131 -34717439 + AluSx SINE Alu 1 309 -3 2033 127 4 0 chr21 190244 190520 -34717050 + AluSp SINE Alu 1 277 -36 394 261 39 46 chr21 191168 191475 -34716095 - HSREP522 Satellite telomeric -106 416 112 214 311 0 33 chr21 192683 192773 -34714797 + G-rich Low_complexity Low_complexity 4 90 0 316 197 0 14 chr21 193632 193703 -34713867 - L1 LINE L1 -3308 2838 2769 198 71 0 0 chr21 193711 193739 -34713831 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1801 138 32 3 chr21 193739 194015 -34713555 - AluSx SINE Alu -27 285 2 1464 208 14 23 chr21 194015 194479 -34713091 - L1 LINE L1 -2203 4646 4150 1629 234 16 0 chr21 194481 194852 -34712718 - MSTB LTR MaLR -49 377 1 3048 201 29 10 chr21 194852 195528 -34712042 - MST-int LTR MaLR 0 1735 1020 4152 241 30 19 chr21 195529 197098 -34710472 - L1PA15-16 LINE L1 -2695 4154 2553 2205 129 0 0 chr21 197098 197393 -34710177 + AluSx SINE Alu 1 295 -17 4152 241 30 19 chr21 197393 198000 -34709570 - L1PA15-16 LINE L1 -4296 2553 1954 406 326 61 64 chr21 198088 198431 -34709139 + L1ME LINE L1 5384 5725 -396 39 74 0 0 chr21 198506 198587 -34708983 + AT_rich Low_complexity Low_complexity 1 81 0 1459 186 29 22 chr21 198743 199018 -34708552 - AluJo SINE Alu -23 289 13 21 0 0 0 chr21 199161 199182 -34708388 + AT_rich Low_complexity Low_complexity 1 21 0 2123 131 13 0 chr21 199184 199308 -34708262 + AluSq SINE Alu 3 124 -189 351 0 0 0 chr21 199308 199347 -34708223 + (CA)n Simple_repeat Simple_repeat 2 40 0 2123 131 13 0 chr21 199347 199528 -34708042 + AluSq SINE Alu 124 312 -1 1350 74 0 0 chr21 200129 200292 -34707278 - AluSg SINE Alu -147 163 1 2341 61 31 10 chr21 200310 200657 -34706913 - AluY SINE Alu 0 311 1 1547 141 0 50 chr21 200657 200899 -34706671 + AluJb SINE Alu 67 296 -16 658 111 0 9 chr21 200908 201016 -34706554 + L1M4 LINE L1 5346 5452 -732 1673 156 17 44 chr21 201017 201151 -34706419 + AluJb SINE Alu 5 141 -171 2072 134 0 0 chr21 201151 201428 -34706142 + AluSg SINE Alu 1 277 -33 440 35 17 0 chr21 201433 201491 -34706079 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 1673 156 17 44 chr21 201491 201645 -34705925 + AluJb SINE Alu 145 291 -21 1936 114 41 28 chr21 201654 201944 -34705626 + AluSg SINE Alu 1 294 -16 1045 91 8 0 chr21 202404 202536 -34705034 + AluSq/x SINE Alu 4 136 -177 1663 106 0 0 chr21 202536 202753 -34704817 + AluY SINE Alu 1 217 -94 468 0 0 0 chr21 203657 203709 -34703861 + (GTTTG)n Simple_repeat Simple_repeat 1 52 0 2118 127 0 0 chr21 203709 203985 -34703585 - AluSx SINE Alu -31 281 6 1843 78 141 0 chr21 204703 204959 -34702611 - AluSq SINE Alu -11 292 1 209 356 67 0 chr21 204966 205070 -34702500 - MIR SINE MIR -116 146 36 1974 149 0 19 chr21 205127 205443 -34702127 + AluSx SINE Alu 1 310 -2 2264 115 0 3 chr21 205896 206201 -34701369 + AluSq SINE Alu 1 304 -9 1891 170 0 13 chr21 206525 206837 -34700733 + AluJb SINE Alu 3 310 -2 2022 112 72 0 chr21 206937 207213 -34700357 + AluSx SINE Alu 1 296 -16 2007 127 3 10 chr21 208329 208621 -34698949 - AluSg SINE Alu -20 290 1 331 174 26 39 chr21 208857 209012 -34698558 + (CAGAGA)n Simple_repeat Simple_repeat 2 154 0 532 126 22 55 chr21 209023 209206 -34698364 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 504 158 30 36 chr21 209221 209566 -34698004 + (CAGAGA)n Simple_repeat Simple_repeat 1 342 0 2488 68 0 3 chr21 209624 209932 -34697638 + AluY SINE Alu 1 307 -4 456 105 13 20 chr21 210589 210741 -34696829 + (TAGA)n Simple_repeat Simple_repeat 1 151 0 668 105 22 33 chr21 210764 210945 -34696625 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 413 87 48 19 chr21 210978 211082 -34696488 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 701 310 60 23 chr21 211125 211477 -34696093 - MLT1J LTR MaLR -45 466 102 1905 179 0 3 chr21 212250 212609 -34694961 + AluJb SINE Alu 1 358 0 221 243 40 101 chr21 212830 212978 -34694592 + L2 LINE L2 2080 2218 -1096 368 337 84 38 chr21 213127 213388 -34694182 + L2 LINE L2 2435 2707 -607 227 139 0 0 chr21 213445 213481 -34694089 + MLT1A2 LTR MaLR 24 59 -331 1410 185 108 15 chr21 213485 213644 -34693926 + MLT1A2 LTR MaLR 21 164 -210 231 36 0 0 chr21 213644 213672 -34693898 + (TC)n Simple_repeat Simple_repeat 2 29 0 1410 185 108 15 chr21 213672 213836 -34693734 + MLT1A2 LTR MaLR 164 374 0 1814 215 18 56 chr21 214179 214677 -34692893 - MLT1D LTR MaLR -6 499 21 282 149 43 0 chr21 214707 214754 -34692816 - MLT1D LTR MaLR -455 50 2 319 85 43 0 chr21 214853 214900 -34692670 - MLT1J LTR MaLR -455 50 2 294 125 42 0 chr21 214902 214950 -34692620 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 214951 214999 -34692571 - MLT1D LTR MaLR -455 50 1 334 64 43 0 chr21 215000 215047 -34692523 - MLT1D LTR MaLR -455 50 2 310 104 42 0 chr21 215049 215097 -34692473 - MLT1D LTR MaLR -455 50 1 331 83 42 0 chr21 215098 215146 -34692424 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 215147 215195 -34692375 - MLT1D LTR MaLR -455 50 1 338 83 42 0 chr21 215196 215244 -34692326 - MLT1D LTR MaLR -455 50 1 291 111 44 0 chr21 215245 215290 -34692280 - MLT1D LTR MaLR -456 49 3 318 104 42 0 chr21 215293 215341 -34692229 - MLT1D LTR MaLR -455 50 1 307 125 42 0 chr21 215342 215390 -34692180 - MLT1D LTR MaLR -455 50 1 348 64 43 0 chr21 215439 215486 -34692084 - MLT1D LTR MaLR -456 49 1 292 128 43 0 chr21 215487 215534 -34692036 - MLT1D LTR MaLR -456 49 1 251 191 0 21 chr21 215536 215583 -34691987 - MLT1E2 LTR MaLR -580 46 1 335 83 42 0 chr21 215636 215684 -34691886 - MLT1D LTR MaLR -455 50 1 329 104 42 0 chr21 215685 215733 -34691837 - MLT1D LTR MaLR -455 50 1 239 137 39 59 chr21 215734 215785 -34691785 - MLT1D LTR MaLR -455 50 1 325 85 43 0 chr21 215786 215833 -34691737 - MLT1D LTR MaLR -455 50 2 561 55 0 0 chr21 216229 216302 -34691268 + L1PA3 LINE L1 6080 6152 -3 2059 130 7 0 chr21 216462 216763 -34690807 - AluSx SINE Alu -9 303 1 414 180 18 9 chr21 217131 217242 -34690328 + CT-rich Low_complexity Low_complexity 2 113 0 970 143 0 16 chr21 217223 217405 -34690165 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 3506 69 0 0 chr21 217417 217865 -34689705 - L1PA8 LINE L1 -15 6157 5710 1255 74 0 0 chr21 218069 218217 -34689353 + AluSg SINE Alu 1 148 -162 352 73 55 0 chr21 218217 218272 -34689298 - L1PA7 LINE L1 -329 5825 5768 945 138 6 12 chr21 218272 218432 -34689138 + L1PA13 LINE L1 5993 6151 -12 191 32 65 0 chr21 218432 218463 -34689107 + T-rich Low_complexity Low_complexity 5 37 0 956 107 71 0 chr21 218476 218616 -34688954 + AluSg SINE Alu 157 306 -4 226 111 0 0 chr21 218839 218875 -34688695 - L1PA14 LINE L1 -204 5957 5922 2049 141 0 0 chr21 218890 219181 -34688389 - AluSx SINE Alu -21 291 1 2049 144 0 16 chr21 219206 219518 -34688052 - AluSx SINE Alu -5 307 1 838 160 53 0 chr21 219519 219669 -34687901 - L1PA14 LINE L1 -227 5934 5777 936 138 6 12 chr21 219678 219838 -34687732 + L1PA13 LINE L1 5993 6151 -12 253 43 43 21 chr21 219841 219888 -34687682 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 502 163 0 43 chr21 219888 219966 -34687604 - AluSp/q SINE Alu -30 283 206 2373 91 0 0 chr21 221802 222098 -34685472 - AluY SINE Alu -14 297 2 1832 125 0 42 chr21 222174 222486 -34685084 - AluY SINE Alu 0 307 8 622 147 147 0 chr21 222572 222694 -34684876 - AluSp/q SINE Alu 0 306 170 455 260 24 0 chr21 222695 222785 -34684785 - L1PA16 LINE L1 -46 6120 6025 195 42 0 0 chr21 222785 222809 -34684761 + (CCCTG)n Simple_repeat Simple_repeat 4 27 0 455 260 24 0 chr21 222809 222845 -34684725 - L1PA16 LINE L1 -141 6025 5991 1503 188 52 42 chr21 222864 223172 -34684398 - AluSx SINE Alu -1 311 1 1077 163 25 49 chr21 223222 223467 -34684103 - L1PA16 LINE L1 -136 6030 5792 215 137 0 20 chr21 223859 223910 -34683660 + (TG)n Simple_repeat Simple_repeat 2 51 0 2130 83 0 11 chr21 223913 224190 -34683380 - AluY SINE Alu -37 274 1 1856 86 0 0 chr21 224200 224434 -34683136 - AluSx SINE Alu -25 287 54 2165 116 10 0 chr21 224552 224883 -34682687 + AluSx SINE Alu 1 334 0 2274 98 0 0 chr21 224983 225278 -34682292 + AluSx SINE Alu 1 295 -17 2098 113 0 23 chr21 225280 225580 -34681990 + AluSg SINE Alu 1 293 -17 2245 109 0 19 chr21 225582 225895 -34681675 + AluY SINE Alu 1 307 -4 835 122 35 6 chr21 226251 226767 -34680803 + GA-rich Low_complexity Low_complexity 1 531 0 1247 182 0 9 chr21 227114 227328 -34680242 - AluJo SINE Alu -11 301 90 842 196 163 48 chr21 227367 227501 -34680069 - AluJo SINE Alu -30 282 114 2239 92 14 3 chr21 227501 227796 -34679774 + AluY SINE Alu 1 298 -13 842 196 163 48 chr21 227796 227870 -34679700 - AluJo SINE Alu -198 114 50 1970 142 4 0 chr21 228071 228352 -34679218 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr21 228354 228377 -34679193 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2356 99 0 6 chr21 228835 229147 -34678423 - AluSx SINE Alu -2 310 1 456 178 25 12 chr21 229576 229739 -34677831 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 201 132 0 53 chr21 229827 229865 -34677705 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 551 106 70 0 chr21 229866 230169 -34677401 + (TAGA)n Simple_repeat Simple_repeat 1 324 0 611 298 6 6 chr21 230279 230460 -34677110 - MLT1A1 LTR MaLR 0 365 185 340 209 15 0 chr21 230600 230667 -34676903 - MLT1A2 LTR MaLR -98 276 209 2240 104 0 0 chr21 230866 231256 -34676314 - AluSg SINE Alu 0 390 1 234 288 0 0 chr21 231258 231324 -34676246 - MLT1A2 LTR MaLR -210 155 90 1701 200 0 3 chr21 231348 231653 -34675917 - AluJb SINE Alu -2 310 7 2088 119 3 26 chr21 231661 232001 -34675569 - AluSx SINE Alu 0 312 7 2215 114 3 0 chr21 232009 232344 -34675226 - AluSx SINE Alu 0 312 1 2398 70 3 10 chr21 232585 232883 -34674687 - AluY SINE Alu -10 301 6 2280 74 3 52 chr21 232887 233213 -34674357 - AluY SINE Alu -1 310 1 2124 104 7 45 chr21 233924 234233 -34673337 + AluSx SINE Alu 1 297 -15 219 192 69 46 chr21 234300 234430 -34673140 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 284 193 37 0 chr21 234474 234583 -34672987 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 456 169 41 9 chr21 234703 235028 -34672542 + (TAGA)n Simple_repeat Simple_repeat 1 335 0 508 144 50 12 chr21 235057 235460 -34672110 + (TAGA)n Simple_repeat Simple_repeat 1 418 0 571 150 40 22 chr21 235471 236464 -34671106 + (TAGA)n Simple_repeat Simple_repeat 1 1010 0 273 29 0 0 chr21 237753 237787 -34669783 + (TG)n Simple_repeat Simple_repeat 1 34 0 797 248 103 14 chr21 239596 239878 -34667692 + L2 LINE L2 2844 3150 -163 1679 197 0 3 chr21 240340 240639 -34666931 - AluJb SINE Alu -14 298 1 4770 170 42 21 chr21 241274 242154 -34665416 + L1MA2 LINE L1 3418 4278 -2026 2355 84 0 7 chr21 242154 242453 -34665117 - AluY SINE Alu -13 298 2 4770 170 42 21 chr21 242453 244081 -34663489 + L1MA2 LINE L1 4278 6099 -205 1198 149 15 0 chr21 244192 244393 -34663177 + L1MA2 LINE L1 6101 6304 0 3716 205 25 35 chr21 245518 246406 -34661164 + L1MA8 LINE L1 5412 6290 -1 25 51 0 0 chr21 246470 246509 -34661061 + AT_rich Low_complexity Low_complexity 1 39 0 2535 41 0 31 chr21 247491 247808 -34659762 + AluY SINE Alu 1 307 -4 25 31 0 0 chr21 248245 248277 -34659293 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr21 249578 249603 -34657967 + (A)n Simple_repeat Simple_repeat 1 25 0 39577 76 7 10 chr21 249606 255769 -34651801 + L1PA4 LINE L1 2 6147 -8 3247 215 49 15 chr21 255790 255860 -34651710 - L1PA15-16 LINE L1 -3546 3303 3237 826 75 9 0 chr21 255860 255967 -34651603 - L1PA4 LINE L1 -2 6153 6046 3247 215 49 15 chr21 255967 256927 -34650643 - L1PA15-16 LINE L1 -3612 3237 2249 1930 144 3 0 chr21 256927 257218 -34650352 - AluSx SINE Alu -20 292 1 3247 215 49 15 chr21 257218 257232 -34650338 - L1PA15-16 LINE L1 -4600 2249 2237 242 310 66 46 chr21 258479 258782 -34648788 - L2 LINE L2 -382 2932 2624 211 234 45 147 chr21 259016 259256 -34648314 + L2 LINE L2 2816 3014 -258 1552 183 43 0 chr21 259256 259513 -34648057 + AluJb SINE Alu 1 268 -44 211 234 45 147 chr21 259513 259605 -34647965 + L2 LINE L2 3014 3114 -158 297 196 71 0 chr21 260462 260518 -34647052 + FRAM SINE Alu 75 134 -32 505 235 56 72 chr21 260760 261096 -34646474 - L2 LINE L2 -219 3053 2725 309 214 0 0 chr21 261129 261185 -34646385 - AluJ/monomer SINE Alu -3 299 244 460 214 76 0 chr21 261186 261331 -34646239 - L1M4 LINE L1 -3213 2933 2778 574 240 48 77 chr21 263175 263297 -34644273 - L1M2 LINE L1 -705 5607 5483 1971 101 44 20 chr21 263297 263593 -34643977 - AluSx SINE Alu -7 305 3 574 240 48 77 chr21 263593 263783 -34643787 - L1M2 LINE L1 -829 5483 5304 804 265 50 22 chr21 264202 264564 -34643006 - L1M2 LINE L1 -1157 4989 4618 1785 239 66 20 chr21 264585 265447 -34642123 - L1MA6 LINE L1 -31 6269 5281 40 59 0 0 chr21 265859 265927 -34641643 + AT_rich Low_complexity Low_complexity 1 68 0 690 245 18 26 chr21 266171 266444 -34641126 - L1MA6 LINE L1 -1253 4893 4623 2904 252 23 28 chr21 266452 267354 -34640216 - L1MA6 LINE L1 -9 6291 5394 1406 238 36 28 chr21 267355 268095 -34639475 - L1P4 LINE L1 -565 5601 4855 2418 77 0 0 chr21 268423 268720 -34638850 + AluY SINE Alu 1 297 -14 6085 159 56 35 chr21 269952 270132 -34637438 - Tigger3b DNA MER2_type -1817 1211 1036 2062 137 26 65 chr21 270132 270355 -34637215 + MER1B DNA MER1_type 1 206 -2504 2147 97 35 0 chr21 270355 270645 -34636925 + AluSc SINE Alu 1 300 -9 2062 137 26 65 chr21 270645 270772 -34636798 + MER1B DNA MER1_type 206 337 0 6085 159 56 35 chr21 270772 270832 -34636738 - Tigger3b DNA MER2_type -1992 1036 979 1952 114 7 0 chr21 270832 271104 -34636466 + AluSp SINE Alu 33 306 -7 6085 159 56 35 chr21 271104 271775 -34635795 - Tigger3b DNA MER2_type -2049 979 266 2172 178 66 15 chr21 271775 272186 -34635384 - Tigger2a DNA MER2_type -2 432 1 6085 159 56 35 chr21 272186 272456 -34635114 - Tigger3b DNA MER2_type -2762 266 3 2107 106 0 30 chr21 272599 272900 -34634670 - AluY SINE Alu -19 292 1 1367 317 51 10 chr21 273144 273633 -34633937 + ERVL LTR ERVL 4292 4800 -964 1930 156 3 0 chr21 275480 275775 -34631795 - AluSx SINE Alu -14 298 3 682 252 137 25 chr21 276068 276389 -34631181 + L1ME LINE L1 5392 5748 -414 1720 212 121 22 chr21 276389 276894 -34630676 + L1MCa LINE L1 20 574 -5852 1013 155 95 0 chr21 276897 277150 -34630420 + L1MCa LINE L1 1515 1910 -4516 1090 171 88 0 chr21 277243 277459 -34630111 + Charlie1 DNA MER1_type 578 812 -1949 1983 144 3 0 chr21 277459 277765 -34629805 + AluSg SINE Alu 1 307 -3 5530 125 38 21 chr21 277769 278964 -34628606 + L1PA16 LINE L1 4951 6166 0 4631 53 0 0 chr21 279041 279608 -34627962 + HSATI Satellite Satellite 1 567 -10 1623 151 0 51 chr21 279608 279900 -34627670 + AluY SINE Alu 13 289 -22 266 99 59 46 chr21 279901 280053 -34627517 + (TA)n Simple_repeat Simple_repeat 1 154 0 447 53 80 42 chr21 280073 280340 -34627230 + (TA)n Simple_repeat Simple_repeat 1 277 0 430 144 29 23 chr21 280341 280515 -34627055 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 485 82 61 30 chr21 280494 280791 -34626779 + (TA)n Simple_repeat Simple_repeat 1 306 0 208 99 70 0 chr21 280818 280889 -34626681 + (TA)n Simple_repeat Simple_repeat 2 77 0 1906 53 0 0 chr21 280889 281116 -34626454 + HSATI Satellite Satellite 1 227 -350 2447 152 5 1 chr21 1281122 1312440 -33595130 - ALR/alpha Satellite centromeric 0 33985 58 14243 34 0 0 chr21 1312440 1314925 -33592645 - L1PA2 LINE L1 -1 6154 3670 2447 152 5 1 chr21 1314925 1314984 -33592586 - ALR/alpha Satellite centromeric -33927 58 1 1217 121 11 0 chr21 1315089 1315271 -33592299 + AluSg/x SINE Alu 127 310 0 215 233 0 0 chr21 1315330 1315373 -33592197 + MIR SINE MIR 199 241 -21 1827 133 7 31 chr21 1315378 1315702 -33591868 - AluSc SINE Alu 0 317 1 1836 130 14 3 chr21 1315854 1316146 -33591424 + AluSq SINE Alu 1 295 -18 2252 79 0 0 chr21 1316148 1316504 -33591066 + AluY SINE Alu 3 358 0 23 0 0 0 chr21 1316824 1316847 -33590723 + AT_rich Low_complexity Low_complexity 1 23 0 29 60 0 0 chr21 1317450 1317500 -33590070 + AT_rich Low_complexity Low_complexity 1 50 0 1935 127 0 65 chr21 1317952 1318275 -33589295 - AluSg SINE Alu -8 302 1 1349 169 115 0 chr21 1318322 1318583 -33588987 - AluSq SINE Alu -12 291 1 2177 122 0 3 chr21 1318605 1318916 -33588654 - AluY SINE Alu 0 311 2 1878 168 7 0 chr21 1318956 1319259 -33588311 - AluSx SINE Alu -7 305 1 273 29 0 0 chr21 1320634 1320673 -33586897 + (TG)n Simple_repeat Simple_repeat 1 73 0 273 29 0 0 chr21 1320673 1320707 -33586863 + (TG)n Simple_repeat Simple_repeat 2 35 0 251 170 38 19 chr21 1321278 1321331 -33586239 - MLT1F1 LTR MaLR -83 484 431 930 342 32 32 chr21 1321415 1321980 -33585590 - HERVL LTR ERVL -1391 4263 3699 314 370 70 17 chr21 1322006 1322306 -33585264 - HERVL LTR ERVL -2092 3672 3357 415 219 45 77 chr21 1322688 1322735 -33584835 + L1ME1 LINE L1 5241 5288 -858 2084 102 0 14 chr21 1322735 1323020 -33584550 + AluY SINE Alu 20 300 -11 415 219 45 77 chr21 1323020 1323127 -33584443 + L1ME1 LINE L1 5288 5390 -756 990 268 137 7 chr21 1323129 1323677 -33583893 + L1ME1 LINE L1 5396 6017 -149 236 241 9 93 chr21 1324620 1324728 -33582842 - MIR SINE MIR -44 218 120 2273 97 0 0 chr21 1326011 1326310 -33581260 - AluY SINE Alu -8 303 5 2051 107 45 0 chr21 1326702 1326992 -33580578 + AluSq SINE Alu 1 303 -10 998 81 0 0 chr21 1327148 1327271 -33580299 + AluY SINE Alu 12 134 -177 1516 183 51 3 chr21 1327271 1327566 -33580004 + AluSx SINE Alu 1 309 -3 1970 159 0 0 chr21 1328577 1328879 -33578691 - AluSx SINE Alu 0 312 11 2118 121 3 3 chr21 1329630 1329928 -33577642 + AluSg SINE Alu 1 298 -12 1153 138 6 0 chr21 1330496 1330663 -33576907 + AluSg/x SINE Alu 127 294 -16 512 230 14 0 chr21 1330936 1331075 -33576495 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 2112 130 17 3 chr21 1331314 1331613 -33575957 + AluSg SINE Alu 1 303 -7 28 111 0 0 chr21 1331744 1331870 -33575700 + AT_rich Low_complexity Low_complexity 1 126 0 2168 114 7 0 chr21 1332250 1332549 -33575021 - AluY SINE Alu -10 301 1 2177 121 6 10 chr21 1332614 1332928 -33574642 - AluSp SINE Alu 0 313 1 1820 157 44 0 chr21 1333273 1333566 -33574004 - AluSx SINE Alu -6 306 1 2193 115 0 13 chr21 1333588 1333893 -33573677 - AluY SINE Alu -8 303 3 670 276 89 22 chr21 1334016 1334241 -33573329 + MIR SINE MIR 3 242 -20 5746 154 61 24 chr21 1334271 1335176 -33572394 - Tigger3b DNA MER2_type -1797 1231 361 2044 143 0 3 chr21 1335176 1335483 -33572087 + AluSx SINE Alu 1 306 -6 2598 36 3 0 chr21 1335490 1335791 -33571779 + AluY SINE Alu 1 302 -9 5746 154 61 24 chr21 1335791 1336064 -33571506 - Tigger3b DNA MER2_type -2672 356 1 22 0 0 0 chr21 1336679 1336701 -33570869 + AT_rich Low_complexity Low_complexity 1 22 0 245 27 54 0 chr21 1337161 1337198 -33570372 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2050 136 0 3 chr21 1337624 1337919 -33569651 + AluSc SINE Alu 3 296 -13 876 181 13 7 chr21 1338276 1338431 -33569139 - AluSg/x SINE Alu -21 289 134 2083 152 0 9 chr21 1338434 1338612 -33568958 - AluSx SINE Alu 0 312 137 1660 116 0 0 chr21 1338612 1338827 -33568743 - AluSg SINE Alu -95 215 1 2083 152 0 9 chr21 1338827 1338963 -33568607 - AluSx SINE Alu -175 137 1 3494 206 30 75 chr21 1339032 1340047 -33567523 + LTR5 LTR ERVK 1 969 0 2039 116 20 13 chr21 1341667 1341969 -33565601 + AluY SINE Alu 1 304 -7 3610 199 39 39 chr21 1341980 1342261 -33565309 + L1MB4 LINE L1 4905 5184 -996 2065 121 36 0 chr21 1342261 1342542 -33565028 + AluSg SINE Alu 1 291 -19 3610 199 39 39 chr21 1342542 1343544 -33564026 + L1MB4 LINE L1 5184 6180 0 2461 59 7 0 chr21 1344079 1344382 -33563188 - AluY SINE Alu -6 305 1 1493 185 102 10 chr21 1344725 1345039 -33562531 + MER61A LTR ERV1 1 343 0 2265 105 3 0 chr21 1345574 1345878 -33561692 - AluSc SINE Alu 0 309 5 2129 176 91 36 chr21 1346356 1346883 -33560687 - L1MA9 LINE L1 -2 6310 5755 304 294 31 12 chr21 1346877 1347037 -33560533 + L1MC3 LINE L1 5241 5403 -743 563 226 78 23 chr21 1347059 1347316 -33560254 + L1MCa LINE L1 1713 1983 -4443 374 299 60 0 chr21 1347332 1347449 -33560121 + L1MCa LINE L1 2057 2180 -4246 304 248 75 99 chr21 1347477 1347638 -33559932 + L1MCa LINE L1 2167 2323 -4103 1490 182 68 0 chr21 1347638 1347957 -33559613 + AluSx SINE Alu 1 337 0 3160 249 65 18 chr21 1347980 1349344 -33558226 + L1MCa LINE L1 2936 4363 -2063 267 152 0 0 chr21 1349379 1349425 -33558145 + L1MC3 LINE L1 5548 5593 -751 1101 151 6 6 chr21 1349491 1349670 -33557900 - AluSc SINE Alu -12 297 119 666 140 0 0 chr21 1349727 1349834 -33557736 - AluSq/x SINE Alu -206 107 1 608 215 34 38 chr21 1349834 1350043 -33557527 + L1MC3 LINE L1 5626 5833 -1952 2362 215 31 61 chr21 1350058 1350152 -33557418 + L1MC3 LINE L1 6004 6099 -1686 2303 72 7 13 chr21 1350152 1350457 -33557113 - AluY SINE Alu -8 303 1 2362 215 31 61 chr21 1350457 1350681 -33556889 + L1MC3 LINE L1 6099 6328 -1457 2279 100 0 19 chr21 1350681 1350990 -33556580 + AluSq SINE Alu 9 311 -2 2362 215 31 61 chr21 1350990 1351413 -33556157 + L1MC3 LINE L1 6328 6724 -1061 292 133 67 17 chr21 1351685 1351745 -33555825 - AluJb SINE Alu -7 295 233 398 182 0 0 chr21 1351752 1351829 -33555741 + L1MC/D LINE L1 5463 5539 -794 1157 222 16 12 chr21 1351830 1352073 -33555497 - AluJb SINE Alu -68 244 1 2249 65 33 29 chr21 1354498 1354833 -33552737 + AluY SINE Alu 1 311 0 1983 135 10 0 chr21 1354834 1355130 -33552440 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr21 1356308 1356329 -33551241 + AT_rich Low_complexity Low_complexity 1 21 0 270 252 21 42 chr21 1357142 1357285 -33550285 - MER104 DNA MER2_type -37 143 4 515 316 65 17 chr21 1357378 1357609 -33549961 - MIR SINE MIR -1 261 20 21 57 0 0 chr21 1358029 1358064 -33549506 + AT_rich Low_complexity Low_complexity 1 35 0 299 305 19 0 chr21 1358698 1358803 -33548767 + MER102b DNA MER1_type 234 340 -1 22 70 0 0 chr21 1358858 1358901 -33548669 + AT_rich Low_complexity Low_complexity 1 43 0 2201 126 3 7 chr21 1359311 1359621 -33547949 - AluSc SINE Alu 0 309 1 259 312 91 0 chr21 1360155 1360232 -33547338 - L2 LINE L2 -50 3222 3139 22 56 0 0 chr21 1360642 1360678 -33546892 + AT_rich Low_complexity Low_complexity 1 36 0 1043 185 6 6 chr21 1360975 1361153 -33546417 + AluSx SINE Alu 2 179 -133 484 257 0 0 chr21 1362890 1362995 -33544575 + U6 snRNA snRNA 1 105 -2 31 58 0 0 chr21 1363440 1363492 -33544078 + AT_rich Low_complexity Low_complexity 1 52 0 605 186 0 0 chr21 1363663 1363765 -33543805 - AluJ/FLAM SINE Alu -210 102 1 39 38 0 0 chr21 1364754 1364807 -33542763 + AT_rich Low_complexity Low_complexity 1 53 0 45 105 0 0 chr21 1364928 1365099 -33542471 + AT_rich Low_complexity Low_complexity 1 171 0 364 141 0 0 chr21 1365100 1365166 -33542404 - FLAM SINE Alu -8 125 68 1421 192 44 64 chr21 1365218 1365665 -33541905 - Tigger2 DNA MER2_type 0 2718 1 229 200 11 56 chr21 1366433 1366523 -33541047 + (TTA)n Simple_repeat Simple_repeat 2 87 0 1973 132 7 19 chr21 1366668 1366978 -33540592 + AluSx SINE Alu 3 308 -4 2294 179 72 12 chr21 1367269 1367783 -33539787 + LTR10A LTR ERV1 3 547 -62 18922 189 28 27 chr21 1367821 1369713 -33537857 + HERVI LTR ERV1 26 1916 -5869 2277 98 0 3 chr21 1369713 1370008 -33537562 - AluY SINE Alu -17 294 1 18922 189 28 27 chr21 1370008 1373365 -33534205 + HERVI LTR ERV1 1916 5210 -2575 7171 237 14 35 chr21 1373363 1375292 -33532278 + LTR10A-int LTR ERV1 4758 6647 -2 2283 159 72 13 chr21 1375366 1375837 -33531733 + LTR10A LTR ERV1 1 499 -110 820 270 44 0 chr21 1376950 1377154 -33530416 - MER58A DNA MER1_type 0 224 12 26 50 0 0 chr21 1377366 1377406 -33530164 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr21 1377474 1377497 -33530073 + AT_rich Low_complexity Low_complexity 1 23 0 297 346 78 35 chr21 1377769 1378026 -33529544 - L2 LINE L2 -1015 2299 2032 1341 232 55 29 chr21 1378298 1378864 -33528706 - L1MEc LINE L1 -3558 2657 2122 557 249 51 61 chr21 1378913 1379110 -33528460 - L1MEc LINE L1 -4258 2138 1944 1280 350 44 39 chr21 1379476 1380068 -33527502 - L1MEc LINE L1 -5762 634 40 2298 75 7 16 chr21 1380560 1380867 -33526703 + AluY SINE Alu 1 304 -7 454 314 88 0 chr21 1381160 1381364 -33526206 - L1ME4a LINE L1 -283 5838 5617 31 0 0 0 chr21 1381518 1381549 -33526021 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 1381686 1381708 -33525862 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr21 1381839 1381878 -33525692 + AT_rich Low_complexity Low_complexity 1 39 0 1778 223 48 9 chr21 1382434 1382651 -33524919 - L1M4 LINE L1 -464 5720 5513 2055 66 0 4 chr21 1382651 1382910 -33524660 - AluY SINE Alu -53 258 1 1778 223 48 9 chr21 1382910 1383364 -33524206 - L1M4 LINE L1 -671 5513 5023 1382 186 8 11 chr21 1383366 1383629 -33523941 + L1PB4 LINE L1 5883 6144 -12 812 177 83 26 chr21 1383681 1383873 -33523697 - L1MB4 LINE L1 -2 6178 5976 353 276 37 22 chr21 1384040 1384174 -33523396 + L2 LINE L2 2661 2796 -518 336 347 60 7 chr21 1384305 1384455 -33523115 + L2 LINE L2 2967 3124 -189 874 185 25 0 chr21 1384477 1384634 -33522936 - AluJo SINE Alu -32 280 120 203 307 66 44 chr21 1384634 1384771 -33522799 + L2 LINE L2 3125 3264 -49 5842 129 25 11 chr21 1384915 1385414 -33522156 - L1P LINE L1 -2353 3793 3302 2175 121 0 0 chr21 1385414 1385711 -33521859 - AluSg SINE Alu -13 297 1 5842 129 25 11 chr21 1385711 1386184 -33521386 - L1P LINE L1 -2844 3302 2808 2773 91 0 0 chr21 1386202 1386574 -33520996 + L1PA8 LINE L1 5788 6159 -13 388 313 62 16 chr21 1386598 1386841 -33520729 + L1M4 LINE L1 4495 4748 -1398 1121 267 38 32 chr21 1386872 1387347 -33520223 + L1M4 LINE L1 4812 5289 -857 14959 47 2 1 chr21 1387384 1390022 -33517548 + L1PA5 LINE L1 3507 6145 -9 1984 104 32 26 chr21 1390812 1391121 -33516449 + AluY SINE Alu 1 311 0 1710 148 51 46 chr21 1391634 1392006 -33515564 + THE1C LTR MaLR 2 375 0 380 222 0 0 chr21 1392006 1392078 -33515492 + THE1C-int LTR MaLR 1 72 -1508 6522 145 10 8 chr21 1392071 1393215 -33514355 + THE1C-int LTR MaLR 216 1422 -158 1948 136 3 10 chr21 1394454 1394755 -33512815 + AluSq SINE Alu 1 299 -14 7741 98 4 1 chr21 1395319 1396387 -33511183 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr21 1396442 1396484 -33511086 + AT_rich Low_complexity Low_complexity 1 42 0 2000 138 0 0 chr21 1396586 1396877 -33510693 + AluSq SINE Alu 1 291 -22 2806 21 0 0 chr21 1397221 1397548 -33510022 - L1PA2 LINE L1 0 6155 5829 3522 30 0 5 chr21 1397548 1397977 -33509593 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr21 1398092 1398113 -33509457 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 1398253 1398281 -33509289 + AT_rich Low_complexity Low_complexity 1 28 0 2337 82 0 3 chr21 1398485 1398791 -33508779 - AluY SINE Alu -6 305 1 1200 126 6 0 chr21 1400114 1400288 -33507282 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr21 1400608 1400653 -33506917 + AT_rich Low_complexity Low_complexity 1 45 0 1026 152 162 0 chr21 1401282 1401480 -33506090 + MER30 DNA MER1_type 1 230 0 3650 203 39 17 chr21 1401689 1402507 -33505063 - L1PA16 LINE L1 -14 6152 5317 5229 273 48 16 chr21 1402510 1402966 -33504604 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr21 1402966 1402988 -33504582 + (TG)n Simple_repeat Simple_repeat 2 23 0 5229 273 48 16 chr21 1402988 1404443 -33503127 - L1 LINE L1 -1304 4842 3310 4118 231 81 31 chr21 1404454 1404649 -33502921 + L1MA8 LINE L1 3897 4081 -2219 2085 116 3 0 chr21 1404649 1404943 -33502627 - AluY SINE Alu -16 295 1 4118 231 81 31 chr21 1404943 1406685 -33500885 + L1MA8 LINE L1 4081 5941 -359 565 213 173 4 chr21 1406696 1406921 -33500649 + L1MA8 LINE L1 6025 6287 -4 2054 136 0 0 chr21 1407664 1407951 -33499619 - AluSc SINE Alu -16 293 7 1928 156 0 7 chr21 1408644 1408951 -33498619 + AluSg SINE Alu 5 309 -1 849 162 37 11 chr21 1409585 1409776 -33497794 + L1MA3 LINE L1 6110 6305 0 632 312 65 12 chr21 1414595 1414623 -33492947 + L1MB5 LINE L1 1288 1313 -5071 1251 232 21 7 chr21 1414623 1414907 -33492663 + AluJb SINE Alu 1 288 -24 632 312 65 12 chr21 1414907 1415308 -33492262 + L1MB5 LINE L1 1313 1740 -4644 326 300 63 9 chr21 1415449 1415766 -33491804 + L1MB5 LINE L1 1966 2299 -4085 437 293 40 50 chr21 1415834 1416056 -33491514 + L1MB5 LINE L1 2390 2609 -3773 21 36 0 0 chr21 1416263 1416291 -33491279 + AT_rich Low_complexity Low_complexity 1 28 0 2126 112 10 0 chr21 1416345 1416650 -33490920 + AluY SINE Alu 1 308 -3 1788 146 33 0 chr21 1416675 1416949 -33490621 + AluSx SINE Alu 12 294 -18 448 282 40 44 chr21 1416987 1417239 -33490331 + L1MB5 LINE L1 2887 3137 -3245 737 264 52 18 chr21 1417242 1417571 -33489999 + L1MB5 LINE L1 4747 5086 -1296 2131 108 0 7 chr21 1417597 1417893 -33489677 - AluY SINE Alu -17 294 1 679 348 56 22 chr21 1417903 1418037 -33489533 + L1MB5 LINE L1 5930 6058 -352 1835 143 17 10 chr21 1418037 1418330 -33489240 + AluSp SINE Alu 1 295 -18 679 348 56 22 chr21 1418330 1418606 -33488964 + L1MB5 LINE L1 6058 6354 -56 2232 78 0 3 chr21 1419039 1419366 -33488204 + AluY SINE Alu 1 326 0 270 254 9 45 chr21 1419575 1419685 -33487885 + L1MB2 LINE L1 2887 2992 -4573 511 259 0 9 chr21 1419686 1419802 -33487768 + FLAM_C SINE Alu 1 115 -28 2008 124 0 10 chr21 1420060 1420378 -33487192 + AluSg1 SINE Alu 3 309 0 509 271 66 35 chr21 1420386 1420752 -33486818 + L1MB2 LINE L1 3269 3645 -3922 478 185 0 0 chr21 1420836 1420917 -33486653 + AluJ/FLAM SINE Alu 4 84 -228 652 278 54 11 chr21 1420917 1421266 -33486304 + L1MB2 LINE L1 3657 4020 -3545 1931 218 36 2 chr21 1421290 1421702 -33485868 - MSTB LTR MaLR 0 426 1 1327 206 33 11 chr21 1421832 1422108 -33485462 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr21 1422119 1422141 -33485429 + AT_rich Low_complexity Low_complexity 1 22 0 962 285 83 19 chr21 1422379 1423229 -33484341 + L1MB2 LINE L1 6086 6988 -599 22 0 0 0 chr21 1423243 1423265 -33484305 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr21 1423311 1423351 -33484219 + AT_rich Low_complexity Low_complexity 1 40 0 384 183 53 12 chr21 1423370 1423721 -33483849 + (TA)n Simple_repeat Simple_repeat 1 365 0 1681 196 50 34 chr21 1423726 1424109 -33483461 + L1MB2 LINE L1 7127 7519 -71 1226 243 7 10 chr21 1424109 1424397 -33483173 - AluJo SINE Alu -24 288 2 1681 196 50 34 chr21 1424397 1424452 -33483118 + L1MB2 LINE L1 7519 7572 -18 1868 103 4 8 chr21 1424670 1424932 -33482638 + AluSq SINE Alu 1 261 -52 451 288 31 18 chr21 1425273 1425436 -33482134 + L1MA9 LINE L1 701 865 -5090 3851 232 52 17 chr21 1425441 1427559 -33480011 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr21 1427634 1427663 -33479907 + AT_rich Low_complexity Low_complexity 1 29 0 203 413 0 0 chr21 1428116 1428191 -33479379 - L2 LINE L2 -498 2816 2742 327 341 30 1 chr21 1429437 1429598 -33477972 - MER5A DNA MER1_type -1 188 2 429 216 92 60 chr21 1429744 1429962 -33477608 + L1MC4 LINE L1 7281 7505 -537 2247 98 0 29 chr21 1430294 1430609 -33476961 - AluSx SINE Alu -6 306 1 235 331 162 7 chr21 1431463 1431611 -33475959 - MER5A DNA MER1_type 0 189 19 252 216 18 108 chr21 1431828 1431939 -33475631 - MIR SINE MIR -9 253 153 1996 127 3 3 chr21 1432023 1432306 -33475264 - AluSp SINE Alu -30 283 1 2219 174 16 5 chr21 1434030 1434462 -33473108 - LTR56 LTR ERV1 0 445 9 1370 180 26 16 chr21 1434952 1435380 -33472190 - MER67C LTR ERV1 -1 709 218 2051 119 10 0 chr21 1436286 1436581 -33470989 + AluSx SINE Alu 1 298 -14 2153 124 3 10 chr21 1436618 1436925 -33470645 - AluSp SINE Alu -8 305 1 22 0 0 0 chr21 1437263 1437285 -33470285 + AT_rich Low_complexity Low_complexity 1 22 0 1215 49 0 19 chr21 1437285 1437447 -33470123 - L1PA4 LINE L1 -1 6154 5996 695 131 5 0 chr21 1437452 1447063 -33460507 - CER Satellite Satellite 0 9650 1 40398 56 3 2 chr21 1447086 1453238 -33454332 + L1PA4 LINE L1 9 6164 0 566 306 107 38 chr21 1453321 1453713 -33453857 + L1MDa LINE L1 1514 1932 -4608 21 0 0 0 chr21 1453941 1453962 -33453608 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 1454078 1454102 -33453468 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr21 1454356 1454485 -33453085 + L1MEc LINE L1 55 185 -6211 711 323 54 58 chr21 1454692 1455428 -33452142 + L1MEc LINE L1 442 1174 -5222 765 150 23 0 chr21 1455571 1455704 -33451866 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr21 1456969 1457042 -33450528 + (TA)n Simple_repeat Simple_repeat 2 74 0 1391 181 87 56 chr21 1457076 1457458 -33450112 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr21 1457458 1457737 -33449833 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr21 1457737 1457768 -33449802 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr21 1458161 1458196 -33449374 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr21 1458223 1458262 -33449308 + AT_rich Low_complexity Low_complexity 1 39 0 316 212 0 0 chr21 1458869 1458935 -33448635 + MER20 DNA MER1_type 151 216 -3 1775 163 58 21 chr21 1459075 1459504 -33448066 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr21 1459688 1460238 -33447332 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr21 1460804 1460856 -33446714 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr21 1461013 1461165 -33446405 + (TA)n Simple_repeat Simple_repeat 1 153 0 26 0 0 0 chr21 1461280 1461306 -33446264 + AT_rich Low_complexity Low_complexity 1 26 0 13436 40 1 0 chr21 1461394 1463138 -33444432 - L1PA2 LINE L1 -1961 4185 2440 9971 31 0 2 chr21 1463138 1465105 -33442465 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr21 1465105 1465134 -33442436 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr21 1465201 1465222 -33442348 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1236 253 46 10 chr21 1465938 1466353 -33441217 - MER54A LTR ERVL 0 901 472 2072 118 74 15 chr21 1466391 1466729 -33440841 - THE1B LTR MaLR 0 364 7 1499 214 51 2 chr21 1466738 1467131 -33440439 - MER54A LTR ERVL -489 412 1 1600 209 0 10 chr21 1468306 1468608 -33438962 - AluJo SINE Alu -3 309 11 1283 239 43 68 chr21 1469595 1469837 -33437733 - MLT1D LTR MaLR 0 505 258 2150 102 7 7 chr21 1469837 1470130 -33437440 - AluSc SINE Alu -16 293 1 1283 239 43 68 chr21 1470130 1470401 -33437169 - MLT1D LTR MaLR -247 258 5 472 213 22 0 chr21 1470496 1470632 -33436938 + GA-rich Low_complexity Low_complexity 2 140 0 1749 242 37 69 chr21 1470642 1471236 -33436334 + MER77 LTR ERV1 25 599 -6 648 321 3 3 chr21 1472372 1472687 -33434883 - L1MEc LINE L1 -3483 2732 2418 813 251 26 31 chr21 1472741 1473050 -33434520 - L1MEc LINE L1 -4038 2358 2050 3285 243 41 30 chr21 1473050 1473988 -33433582 + Tigger6a DNA MER2_type 2 955 -642 1731 192 3 7 chr21 1473988 1474295 -33433275 - AluJb SINE Alu -6 306 1 3285 243 41 30 chr21 1474295 1474426 -33433144 + Tigger6a DNA MER2_type 955 1083 0 813 251 26 31 chr21 1474426 1474503 -33433067 - L1MEc LINE L1 -4346 2050 1974 4963 170 8 22 chr21 1474551 1475727 -33431843 + L1PA16 LINE L1 5007 6165 -1 2321 114 0 0 chr21 1475907 1476214 -33431356 - AluSg SINE Alu -3 307 1 250 54 27 0 chr21 1476258 1476295 -33431275 - L1P LINE L1 -1219 4927 4890 3423 36 4 16 chr21 1476260 1476715 -33430855 + L1PA4 LINE L1 5699 6152 -3 227 229 118 79 chr21 1476720 1477025 -33430545 - L1MEc LINE L1 -4640 1756 1440 539 315 53 19 chr21 1477076 1477406 -33430164 - L1MEc LINE L1 -4516 1630 714 728 330 58 25 chr21 1477427 1477943 -33429627 - L1MEc LINE L1 -5714 682 150 1369 209 21 78 chr21 1479941 1480328 -33427242 - MLT1A1 LTR MaLR 0 365 1 1985 140 64 3 chr21 1480462 1480805 -33426765 + THE1B LTR MaLR 1 364 0 1850 138 32 11 chr21 1481039 1481322 -33426248 - AluSg SINE Alu -21 289 1 306 338 29 43 chr21 1481426 1481565 -33426005 + MER5A DNA MER1_type 52 188 -1 1117 72 0 0 chr21 1482357 1482496 -33425074 - AluY SINE Alu -17 294 156 243 0 0 0 chr21 1483629 1483656 -33423914 + (T)n Simple_repeat Simple_repeat 1 27 0 2449 69 0 10 chr21 1485334 1485637 -33421933 + AluY SINE Alu 1 300 -11 230 209 33 88 chr21 1486310 1486401 -33421169 + MIR SINE MIR 177 262 0 201 176 0 0 chr21 1487807 1487841 -33419729 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2136 67 0 39 chr21 1487899 1488184 -33419386 - AluY SINE Alu 0 311 38 189 0 0 0 chr21 1488771 1488792 -33418778 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1103 243 72 65 chr21 1488823 1489271 -33418299 - MLT1C LTR MaLR -5 462 3 1993 201 8 2 chr21 1489679 1490077 -33417493 + L1PA16 LINE L1 5764 6163 -3 264 178 68 27 chr21 1490083 1490156 -33417414 + L1ME4a LINE L1 5968 6043 -78 201 147 0 0 chr21 1492371 1492405 -33415165 + (CA)n Simple_repeat Simple_repeat 1 34 0 4842 95 28 0 chr21 1492682 1493183 -33414387 - L1PA13 LINE L1 -7 6156 5627 2581 107 0 27 chr21 1493183 1493557 -33414013 + THE1B LTR MaLR 1 364 0 4842 95 28 0 chr21 1493557 1493778 -33413792 - L1PA13 LINE L1 -536 5627 5414 2535 188 13 15 chr21 1494158 1494845 -33412725 - L1M4 LINE L1 -405 6277 5592 689 233 28 40 chr21 1494864 1495117 -33412453 - L1M4 LINE L1 -2191 4453 4204 5091 188 15 20 chr21 1495122 1496696 -33410874 - L1PA16 LINE L1 -5 6864 5302 9766 118 17 29 chr21 1496690 1498156 -33409414 + THE1B-int LTR MaLR 133 1580 0 2562 100 5 24 chr21 1498156 1498527 -33409043 + THE1B LTR MaLR 1 364 0 6378 227 19 8 chr21 1498528 1500006 -33407564 - L1PA16 LINE L1 -5592 1257 5 596 217 17 1 chr21 1500051 1500188 -33407382 - L1M4 LINE L1 -2492 4152 4014 1817 277 46 38 chr21 1500231 1501749 -33405821 - L1M4c LINE L1 -3653 2991 1360 3803 256 45 40 chr21 1501771 1503045 -33404525 - L1M4c LINE L1 -5261 1281 2 303 319 34 8 chr21 1504084 1504203 -33403367 + L2 LINE L2 3192 3313 0 21 89 0 0 chr21 1504287 1504343 -33403227 + AT_rich Low_complexity Low_complexity 1 56 0 269 333 70 31 chr21 1504733 1504862 -33402708 - MLT1F LTR MaLR -107 435 302 320 252 119 63 chr21 1504834 1504977 -33402593 - MLT1G LTR MaLR -211 379 229 231 255 89 76 chr21 1505208 1505365 -33402205 + MIR SINE MIR 60 218 -44 809 287 14 5 chr21 1506225 1506448 -33401122 - L2 LINE L2 -1769 1545 1321 650 302 32 29 chr21 1506543 1506821 -33400749 + MLT1K LTR MaLR 300 578 -10 357 319 48 24 chr21 1507054 1507220 -33400350 - MIR SINE MIR -30 232 63 872 274 40 18 chr21 1507509 1507783 -33399787 - LTR16A LTR ERVL -154 296 17 2353 64 3 14 chr21 1507869 1508165 -33399405 - AluY SINE Alu -18 293 1 22 35 0 0 chr21 1508328 1508357 -33399213 + AT_rich Low_complexity Low_complexity 1 29 0 2564 183 55 6 chr21 1508973 1509465 -33398105 + MLT2B1 LTR ERVL 1 516 -4 225 0 0 0 chr21 1509625 1509650 -33397920 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 3096 130 83 22 chr21 1510658 1511404 -33396166 - LTR12 LTR ERV1 0 1480 16 751 213 38 47 chr21 1511626 1511861 -33395709 - pTR5 LTR ERV1 -1463 975 743 2332 68 0 40 chr21 1511910 1512232 -33395338 + AluY SINE Alu 1 309 -2 27 49 0 0 chr21 1513508 1513549 -33394021 + AT_rich Low_complexity Low_complexity 1 41 0 225 152 22 0 chr21 1514559 1514605 -33392965 - HAL1 LINE L1 -134 2373 2327 2648 174 99 36 chr21 1515519 1516184 -33391386 + MER39 LTR ERV1 1 707 0 367 333 57 13 chr21 1516418 1516577 -33390993 - L2 LINE L2 -329 2984 2819 229 224 0 17 chr21 1516714 1516772 -33390798 + MER58B DNA MER1_type 1 57 -284 496 182 0 0 chr21 1516825 1516902 -33390668 + MER58B DNA MER1_type 264 340 -1 1471 201 14 10 chr21 1517261 1517554 -33390016 - AluJb SINE Alu -16 296 3 33 43 0 0 chr21 1518196 1518243 -33389327 + AT_rich Low_complexity Low_complexity 1 47 0 312 27 0 0 chr21 1520442 1520479 -33387091 + (TG)n Simple_repeat Simple_repeat 2 38 0 4059 190 33 21 chr21 1521102 1522671 -33384899 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr21 1522726 1522778 -33384792 + AT_rich Low_complexity Low_complexity 1 52 0 2509 65 0 3 chr21 1522805 1523115 -33384455 - AluY SINE Alu -2 309 1 2786 13 0 3 chr21 1523426 1523737 -33383833 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr21 1524562 1524603 -33382967 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr21 1525253 1525283 -33382287 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr21 1525400 1525438 -33382132 + AT_rich Low_complexity Low_complexity 1 38 0 2039 145 89 8 chr21 1525536 1525908 -33381662 - MSTA LTR MaLR 0 428 27 2469 156 20 0 chr21 1525933 1526330 -33381240 - MSTA-int LTR MaLR 0 1651 1247 594 202 17 6 chr21 1526406 1526579 -33380991 + CT-rich Low_complexity Low_complexity 3 177 0 311 0 26 0 chr21 1527144 1527183 -33380387 + (TA)n Simple_repeat Simple_repeat 1 40 0 4820 246 59 25 chr21 1527184 1529203 -33378367 - L1MEc LINE L1 -1355 4860 2769 2665 184 4 2 chr21 1529436 1529921 -33377649 - L1MA4 LINE L1 -195 6105 5620 658 221 7 13 chr21 1530062 1530216 -33377354 + L1M4 LINE L1 6 158 -6384 9714 196 39 27 chr21 1530251 1531025 -33376545 - L1MA4 LINE L1 -738 5567 4804 2076 101 18 4 chr21 1531025 1531326 -33376244 - AluSg SINE Alu 0 305 1 9714 196 39 27 chr21 1531326 1533212 -33374358 - L1MA4 LINE L1 -1501 4804 2300 378 251 96 16 chr21 1533183 1533370 -33374200 - L1MEc LINE L1 -3959 2437 2236 502 271 54 0 chr21 1533479 1533645 -33373925 - L1MB4 LINE L1 0 6180 6006 592 238 60 12 chr21 1533665 1533833 -33373737 - L1M4 LINE L1 -1281 4865 4690 2759 247 59 10 chr21 1533845 1534489 -33373081 - L1MB4 LINE L1 -180 6000 5389 2013 121 0 0 chr21 1534489 1534769 -33372801 - AluSq SINE Alu -31 282 3 2759 247 59 10 chr21 1534769 1535693 -33371877 - L1MB4 LINE L1 -791 5389 4352 1078 282 11 11 chr21 1535683 1536044 -33371526 - L1MB4 LINE L1 -2413 3733 3373 1999 126 0 3 chr21 1536619 1536905 -33370665 - AluSq SINE Alu -28 285 1 21 0 0 0 chr21 1536996 1537017 -33370553 + AT_rich Low_complexity Low_complexity 1 21 0 240 184 0 0 chr21 1537029 1537078 -33370492 + (CA)n Simple_repeat Simple_repeat 1 49 0 548 252 47 65 chr21 1537078 1537292 -33370278 - MIR SINE MIR -17 245 36 796 244 72 9 chr21 1537405 1537626 -33369944 - MER46A DNA MER2_type -1 235 1 1860 154 0 24 chr21 1537867 1538165 -33369405 + AluSx SINE Alu 1 291 -21 183 42 0 0 chr21 1538168 1538192 -33369378 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1540 155 121 6 chr21 1539541 1539984 -33367586 - L1MA4 LINE L1 -3 6297 5801 2250 154 37 2 chr21 1539981 1540206 -33367364 + L1M1 LINE L1 5367 5583 -717 399 41 0 0 chr21 1540206 1540255 -33367315 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2037 134 0 0 chr21 1540257 1540540 -33367030 + AluSx SINE Alu 21 303 -9 2250 154 37 2 chr21 1540540 1540720 -33366850 + L1M1 LINE L1 5583 5789 -511 1211 219 62 3 chr21 1540769 1541061 -33366509 - L1MC3 LINE L1 -23 7762 7454 408 41 0 0 chr21 1541062 1541111 -33366459 + THE1A LTR MaLR 1 49 -306 952 55 8 0 chr21 1541111 1541238 -33366332 + THE1-int LTR MaLR 14 141 -1439 325 141 42 0 chr21 1541223 1541294 -33366276 + THE1-int LTR MaLR 1507 1580 0 286 116 0 0 chr21 1541294 1541337 -33366233 + THE1C LTR MaLR 1 43 -332 10006 103 9 8 chr21 1541337 1542754 -33364816 + THE1A-int LTR MaLR 163 1580 0 2348 103 20 8 chr21 1542754 1543105 -33364465 + THE1A LTR MaLR 1 355 0 818 210 44 6 chr21 1543105 1543286 -33364284 - L1MC3 LINE L1 -328 7457 7270 344 243 66 59 chr21 1543291 1543427 -33364143 - L1MA8 LINE L1 -25 6266 6130 10527 207 20 28 chr21 1543423 1547054 -33360516 - L1MC3 LINE L1 -508 7277 2405 1313 77 0 0 chr21 1547054 1547224 -33360346 - AluY SINE Alu -6 305 136 634 115 19 19 chr21 1547224 1547328 -33360242 + LTR1B LTR ERV1 723 826 0 478 190 111 0 chr21 1547328 1547451 -33360119 + MER67B LTR ERV1 60 156 -358 3004 159 45 34 chr21 1547461 1548144 -33359426 - LTR1B LTR ERV1 -88 697 1 1928 129 16 19 chr21 1548670 1548981 -33358589 - AluY SINE Alu -1 310 1 1890 161 0 0 chr21 1549336 1549635 -33357935 + AluSx SINE Alu 1 299 -13 2035 177 36 28 chr21 1552333 1552878 -33354692 + MLT2A2 LTR ERVL 1 551 -3 585 267 91 52 chr21 1552881 1553345 -33354225 - HAL1b LINE L1 -105 1243 762 743 272 58 28 chr21 1553455 1553782 -33353788 - HAL1b LINE L1 -779 569 233 2277 38 0 0 chr21 1553931 1554194 -33353376 + AluY SINE Alu 1 263 -48 230 0 33 0 chr21 1554208 1554238 -33353332 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr21 1554619 1554649 -33352921 + AT_rich Low_complexity Low_complexity 1 30 0 257 359 38 38 chr21 1554999 1555208 -33352362 + L3 LINE CR1 776 984 -593 362 369 0 0 chr21 1555768 1555879 -33351691 + MIR SINE MIR 39 149 -113 317 146 0 36 chr21 1556388 1556443 -33351127 + MER39 LTR ERV1 655 707 0 203 169 0 85 chr21 1556624 1556683 -33350887 + CT-rich Low_complexity Low_complexity 1 54 0 238 312 8 56 chr21 1556999 1557124 -33350446 + L2 LINE L2 3195 3313 0 774 230 8 60 chr21 1557176 1557411 -33350159 - HAL1 LINE L1 -754 1753 1531 711 287 60 11 chr21 1557412 1557778 -33349792 - HAL1 LINE L1 -868 1639 1256 422 190 84 7 chr21 1558096 1558238 -33349332 - HAL1 LINE L1 -1384 1123 971 2054 103 0 7 chr21 1559241 1559543 -33348027 + AluY SINE Alu 1 300 0 1146 297 47 45 chr21 1559591 1560076 -33347494 + MLT1E2 LTR MaLR 1 486 -140 2000 128 0 0 chr21 1560151 1560572 -33346998 + AluSq SINE Alu 3 423 0 321 26 0 0 chr21 1562069 1562107 -33345463 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 80 0 0 chr21 1563555 1563630 -33343940 + AT_rich Low_complexity Low_complexity 1 75 0 1890 121 7 11 chr21 1564719 1565000 -33342570 - AluSx SINE Alu -32 280 1 851 125 0 0 chr21 1565025 1565153 -33342417 - AluSg/x SINE Alu -5 305 178 23 0 0 0 chr21 1565587 1565610 -33341960 + AT_rich Low_complexity Low_complexity 1 23 0 2192 108 15 6 chr21 1565610 1565952 -33341618 - L1PB1 LINE L1 -3 6148 5804 1428 162 37 5 chr21 1566011 1566387 -33341183 - L1MB3 LINE L1 0 6183 5777 234 0 0 0 chr21 1566387 1566413 -33341157 + (CA)n Simple_repeat Simple_repeat 1 26 0 1742 196 42 16 chr21 1566421 1566804 -33340766 - L1MB3 LINE L1 -378 5793 5401 1767 232 37 34 chr21 1566806 1567155 -33340415 + L1M4 LINE L1 4803 5149 -997 1817 118 17 37 chr21 1567155 1567451 -33340119 - AluSc SINE Alu -14 295 6 2168 128 0 10 chr21 1567456 1567769 -33339801 - AluSx SINE Alu -2 310 1 1767 232 37 34 chr21 1567769 1567981 -33339589 + L1M4 LINE L1 5152 5372 -774 861 248 30 52 chr21 1567982 1568298 -33339272 - L1MEc LINE L1 -3649 3292 3028 2517 52 0 0 chr21 1568298 1568604 -33338966 - AluY SINE Alu -5 306 1 861 248 30 52 chr21 1568604 1568769 -33338801 - L1MEc LINE L1 -3913 3028 2861 789 277 79 55 chr21 1568915 1569319 -33338251 - L1MEc LINE L1 -5355 1068 655 1217 300 49 44 chr21 1569328 1569918 -33337652 - L1MEc LINE L1 -5812 611 19 2401 60 0 3 chr21 1570316 1570616 -33336954 + AluY SINE Alu 2 300 -11 2249 195 45 10 chr21 1570688 1571180 -33336390 - LTR22 LTR ERVK 0 509 1 221 209 136 64 chr21 1571639 1571749 -33335821 - MIR SINE MIR -56 206 89 2388 75 0 0 chr21 1573002 1573296 -33334274 - AluY SINE Alu -17 294 1 3430 72 13 4 chr21 1573936 1574409 -33333161 + MER11A LTR ERVK 790 1266 0 7131 191 6 39 chr21 1574411 1575035 -33332535 - L1P LINE L1 -1226 4920 4277 1684 191 3 0 chr21 1575035 1575328 -33332242 - AluJb SINE Alu -18 294 1 7131 191 6 39 chr21 1575328 1575811 -33331759 - L1P LINE L1 -1869 4277 3876 2049 130 3 3 chr21 1575811 1576118 -33331452 - AluSc SINE Alu -2 307 1 7131 191 6 39 chr21 1576118 1576572 -33330998 - L1P LINE L1 -2270 3876 3409 513 301 57 66 chr21 1576594 1576929 -33330641 - MLT1H1 LTR MaLR -204 351 20 2411 74 0 0 chr21 1576930 1577226 -33330344 - AluY SINE Alu -15 296 1 289 215 116 14 chr21 1577252 1577411 -33330159 + L1ME LINE L1 5692 5866 -312 4199 184 11 25 chr21 1577442 1578254 -33329316 - L1MA8 LINE L1 -172 6119 5322 1932 149 10 0 chr21 1578254 1578550 -33329020 - AluSq SINE Alu -14 299 1 4199 184 11 25 chr21 1578550 1578757 -33328813 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr21 1579300 1579356 -33328214 + AT_rich Low_complexity Low_complexity 1 56 0 336 48 0 0 chr21 1579838 1579880 -33327690 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 139 0 0 chr21 1580476 1580512 -33327058 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1823 196 52 28 chr21 1580633 1581020 -33326550 - MSTD LTR MaLR 0 396 1 327 258 0 86 chr21 1581137 1581265 -33326305 + MER5B DNA MER1_type 19 135 -43 2343 57 0 0 chr21 1582850 1583178 -33324392 + AluY SINE Alu 1 328 0 240 35 0 0 chr21 1583988 1584017 -33323553 + (CA)n Simple_repeat Simple_repeat 2 30 0 1724 106 4 0 chr21 1584561 1584797 -33322773 - AluSx SINE Alu -16 296 60 3183 69 7 0 chr21 1584797 1585231 -33322339 - L1PA8 LINE L1 -2 6170 5734 1726 129 7 41 chr21 1585619 1585913 -33321657 - AluSx SINE Alu -18 294 11 26 30 0 0 chr21 1586114 1586147 -33321423 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr21 1587134 1587175 -33320395 + AT_rich Low_complexity Low_complexity 1 41 0 2175 114 3 0 chr21 1587297 1587594 -33319976 + AluSq SINE Alu 1 298 -15 617 316 43 8 chr21 1587807 1588063 -33319507 - LTR16A1 LTR ERVL -20 437 173 21 0 0 0 chr21 1588813 1588834 -33318736 + AT_rich Low_complexity Low_complexity 1 21 0 273 242 0 0 chr21 1588852 1588914 -33318656 - MIR SINE MIR -14 248 187 2123 130 0 0 chr21 1589866 1590159 -33317411 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 1590164 1590186 -33317384 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 1590221 1590254 -33317316 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr21 1591269 1591299 -33316271 + (CA)n Simple_repeat Simple_repeat 1 30 0 628 294 43 7 chr21 1592130 1592406 -33315164 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr21 1592608 1592649 -33314921 + AT_rich Low_complexity Low_complexity 1 41 0 47 73 0 0 chr21 1593140 1593236 -33314334 + AT_rich Low_complexity Low_complexity 1 96 0 282 29 0 0 chr21 1593354 1593389 -33314181 + (GA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr21 1593841 1593864 -33313706 + AT_rich Low_complexity Low_complexity 1 23 0 1172 85 0 0 chr21 1594234 1594387 -33313183 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr21 1594394 1594414 -33313156 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 2093 98 35 0 chr21 1594425 1594711 -33312859 - AluSp SINE Alu -17 296 1 273 161 0 62 chr21 1594999 1595080 -33312490 + Charlie2 DNA MER1_type 2746 2821 -41 5135 159 42 29 chr21 1597375 1599070 -33308500 + L1MA5 LINE L1 4553 6271 -29 9045 117 5 1 chr21 1599070 1600352 -33307218 - HSMAR1 DNA Mariner 0 1287 1 5135 159 42 29 chr21 1600352 1600381 -33307189 + L1MA5 LINE L1 6271 6298 -2 1004 209 34 8 chr21 1600871 1601110 -33306460 - Zaphod DNA AcHobo -8 4015 3771 219 276 102 31 chr21 1602479 1602606 -33304964 - L2 LINE L2 -1 3271 3136 36 0 0 0 chr21 1602840 1602876 -33304694 + AT_rich Low_complexity Low_complexity 1 36 0 656 289 10 5 chr21 1604640 1604841 -33302729 - AluSg/x SINE Alu -5 305 104 985 254 28 43 chr21 1605046 1605543 -33302027 + MLT1H1 LTR MaLR 1 595 0 186 43 0 0 chr21 1605697 1605720 -33301850 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 198 66 66 chr21 1605721 1605812 -33301758 + LTR66 LTR ERVL 177 267 -343 219 139 0 0 chr21 1606179 1606215 -33301355 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 44 0 0 chr21 1606781 1606826 -33300744 + AT_rich Low_complexity Low_complexity 1 45 0 26 88 0 0 chr21 1607365 1607433 -33300137 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 53 chr21 1608028 1608045 -33299525 + AT_rich Low_complexity Low_complexity 1 17 -19 2002 124 3 20 chr21 1608045 1608351 -33299219 - AluSq SINE Alu -12 301 1 23 0 0 53 chr21 1608351 1608371 -33299199 + AT_rich Low_complexity Low_complexity 17 36 0 282 341 11 0 chr21 1608909 1608997 -33298573 + L2 LINE L2 3223 3311 -2 713 231 44 59 chr21 1609082 1609436 -33298134 + L2 LINE L2 2321 2755 -559 1220 329 45 11 chr21 1609626 1610088 -33297482 + L2 LINE L2 2815 3292 -21 2189 104 3 0 chr21 1610092 1610380 -33297190 + AluSc SINE Alu 5 293 -16 2234 132 5 27 chr21 1611475 1611847 -33295723 - THE1B LTR MaLR 0 364 1 217 217 0 33 chr21 1611854 1611914 -33295656 + (TAA)n Simple_repeat Simple_repeat 2 59 0 26 0 0 0 chr21 1612537 1612563 -33295007 + AT_rich Low_complexity Low_complexity 1 26 0 189 147 0 0 chr21 1614982 1615016 -33292554 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 271 43 0 43 chr21 1615101 1615148 -33292422 + (TTG)n Simple_repeat Simple_repeat 1 45 0 210 143 0 0 chr21 1615361 1615396 -33292174 + (T)n Simple_repeat Simple_repeat 1 35 0 248 172 0 16 chr21 1616939 1617003 -33290567 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 24 0 0 chr21 1617062 1617103 -33290467 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr21 1617891 1617925 -33289645 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2377 142 37 40 chr21 1617969 1618398 -33289172 + MSTA LTR MaLR 1 428 0 208 158 35 18 chr21 1619403 1619460 -33288110 + T-rich Low_complexity Low_complexity 2 59 0 196 321 62 0 chr21 1619569 1619650 -33287920 + MIR SINE MIR 60 145 -63 1488 208 0 0 chr21 1621877 1622151 -33285419 + AluJo SINE Alu 30 303 -9 571 99 0 0 chr21 1622154 1622235 -33285335 + MER72 LTR ERV1 642 722 0 257 235 47 0 chr21 1623580 1623665 -33283905 + L1MC4 LINE L1 6614 6702 -1340 1473 173 123 62 chr21 1623691 1624032 -33283538 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr21 1624581 1624609 -33282961 + (CA)n Simple_repeat Simple_repeat 1 28 0 4972 189 76 41 chr21 1625189 1626700 -33280870 - MER52A LTR ERV1 0 1755 1 2399 66 0 10 chr21 1627352 1627654 -33279916 - AluY SINE Alu -12 299 1 402 101 0 0 chr21 1627670 1627739 -33279831 + (CA)n Simple_repeat Simple_repeat 2 70 0 285 204 0 0 chr21 1627739 1627783 -33279787 - FAM SINE Alu -69 106 63 2039 116 0 3 chr21 1627909 1628193 -33279377 + AluSq SINE Alu 1 283 -30 2265 185 46 78 chr21 1628654 1628746 -33278824 + L1MA9 LINE L1 5519 5612 -700 1867 158 7 0 chr21 1628746 1629037 -33278533 + AluSx SINE Alu 1 293 -19 2265 185 46 78 chr21 1629037 1629550 -33278020 + L1MA9 LINE L1 5612 6105 -207 447 207 43 0 chr21 1629552 1629668 -33277902 + L1MA9 LINE L1 6156 6276 -36 733 191 0 22 chr21 1630023 1630159 -33277411 + AluJo/FLAM SINE Alu 1 133 -179 383 179 0 0 chr21 1630160 1630227 -33277343 + AluJ/FRAM SINE Alu 228 294 -8 231 189 0 0 chr21 1631002 1631039 -33276531 + 5S rRNA rRNA 2 38 -83 709 263 117 17 chr21 1631044 1631482 -33276088 + L2 LINE L2 2413 2957 -357 256 353 8 15 chr21 1631503 1631636 -33275934 - MLT1J2 LTR MaLR -14 436 305 2131 109 7 0 chr21 1631974 1632257 -33275313 - AluSx SINE Alu -27 285 1 307 284 125 83 chr21 1632257 1632641 -33274929 + MLT1J1 LTR MaLR 28 427 -19 197 290 9 37 chr21 1632651 1632758 -33274812 + L2 LINE L2 3085 3188 -125 829 251 23 32 chr21 1632768 1632987 -33274583 + MER58A DNA MER1_type 2 218 -6 523 252 16 8 chr21 1632994 1633117 -33274453 + L2 LINE L2 3190 3313 0 941 235 118 76 chr21 1633134 1633619 -33273951 + MLT1D LTR MaLR 1 505 0 24 32 0 0 chr21 1634844 1634875 -33272695 + AT_rich Low_complexity Low_complexity 1 31 0 1188 274 62 32 chr21 1635896 1636480 -33271090 - HAL1b LINE L1 -736 612 12 1547 173 74 28 chr21 1637051 1637403 -33270167 + THE1C LTR MaLR 5 372 -3 6138 168 40 58 chr21 1637406 1638744 -33268826 + THE1C-int LTR MaLR 1 1314 -266 339 49 0 0 chr21 1638744 1638785 -33268785 - MLT2A2 LTR ERVL 0 464 424 216 0 0 0 chr21 1638786 1638810 -33268760 + (TA)n Simple_repeat Simple_repeat 2 25 0 2415 89 3 0 chr21 1638814 1639127 -33268443 - MLT2A2 LTR ERVL -139 314 1 41267 95 11 8 chr21 1639127 1644760 -33262810 - HERVL-A2-A2 LTR ERVL 0 5654 1 3156 107 16 7 chr21 1644760 1645209 -33262361 - MLT2A2 LTR ERVL 0 453 1 1702 119 15 4 chr21 1645209 1645477 -33262093 + THE1C-int LTR MaLR 1310 1580 0 1582 161 79 37 chr21 1645479 1645834 -33261736 + THE1C LTR MaLR 3 372 -3 351 0 0 0 chr21 1645834 1645873 -33261697 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 700 14 88 7 chr21 1645887 1646034 -33261536 + (TA)n Simple_repeat Simple_repeat 2 160 0 1822 229 76 19 chr21 1646034 1646466 -33261104 - MLT2B1 LTR ERVL -63 457 1 4409 186 21 10 chr21 1646508 1647334 -33260236 - ERVL-B1 LTR ERVL -235 5529 4695 1408 285 71 7 chr21 1647330 1647869 -33259701 - ERVL-B1 LTR ERVL -5084 591 5 948 258 98 24 chr21 1647873 1648286 -33259284 - MLT2B1 LTR ERVL 0 464 1 4490 222 73 42 chr21 1648330 1650329 -33257241 + L1MC3 LINE L1 3530 5581 -743 814 118 0 0 chr21 1650334 1650473 -33257097 - AluY SINE Alu 0 310 172 2620 221 87 15 chr21 1650478 1651206 -33256364 + L1MC3 LINE L1 5584 6363 -1422 1362 219 19 41 chr21 1651210 1651529 -33256041 + MSTD LTR MaLR 84 395 -1 445 98 12 12 chr21 1651530 1651612 -33255958 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2227 140 5 27 chr21 1652658 1653030 -33254540 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr21 1654296 1654367 -33253203 + AT_rich Low_complexity Low_complexity 1 71 0 1301 78 0 31 chr21 1654458 1654649 -33252921 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr21 1654946 1654985 -33252585 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 199 93 47 0 chr21 1655601 1655644 -33251926 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr21 1655908 1655929 -33251641 + AT_rich Low_complexity Low_complexity 1 21 0 188 382 0 0 chr21 1657042 1657097 -33250473 + MIR SINE MIR 83 137 -125 25 0 0 0 chr21 1657183 1657208 -33250362 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr21 1657267 1657296 -33250274 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr21 1657320 1657349 -33250221 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr21 1657674 1657702 -33249868 + (T)n Simple_repeat Simple_repeat 1 28 0 4197 189 42 9 chr21 1658170 1658232 -33249338 - L1MC2 LINE L1 -6 6338 6280 2329 87 7 0 chr21 1658232 1658531 -33249039 + AluY SINE Alu 1 301 -10 4197 189 42 9 chr21 1658531 1659364 -33248206 - L1MC2 LINE L1 -64 6280 5413 2006 105 36 0 chr21 1659373 1659678 -33247892 - L1PA16 LINE L1 -9 6157 5842 715 131 78 0 chr21 1659678 1659831 -33247739 - L1MC2 LINE L1 -2365 5420 5256 2339 103 0 0 chr21 1661039 1661340 -33246230 - AluSq SINE Alu -12 301 1 941 203 17 0 chr21 1661725 1661902 -33245668 - AluSg/x SINE Alu -1 309 130 2128 133 0 9 chr21 1661902 1662217 -33245353 - AluSx SINE Alu 0 312 1 558 89 13 0 chr21 1662627 1662706 -33244864 - MADE1 DNA Mariner 0 80 1 913 266 22 0 chr21 1664052 1664274 -33243296 + MIR SINE MIR 36 262 0 526 220 55 0 chr21 1664839 1664948 -33242622 + MIR3 SINE MIR 82 196 -12 225 0 0 0 chr21 1665736 1665761 -33241809 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 1666235 1666256 -33241314 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 1666892 1666936 -33240634 + AT_rich Low_complexity Low_complexity 1 44 0 189 299 75 47 chr21 1667864 1667971 -33239599 + L2 LINE L2 3197 3306 -7 32 0 0 0 chr21 1668856 1668888 -33238682 + AT_rich Low_complexity Low_complexity 1 32 0 1203 242 168 66 chr21 1670167 1670654 -33236916 - MLT1F LTR MaLR 0 542 6 258 32 0 0 chr21 1671231 1671262 -33236308 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 31 0 0 chr21 1671261 1671326 -33236244 + (GA)n Simple_repeat Simple_repeat 2 66 0 428 261 27 9 chr21 1671328 1671439 -33236131 + MER5B DNA MER1_type 63 175 -3 9650 206 11 24 chr21 1671678 1673914 -33233656 + L1 LINE L1 2286 4492 -1654 1136 157 0 0 chr21 1673915 1674093 -33233477 + AluSp SINE Alu 136 313 0 3205 227 9 1 chr21 1674093 1674828 -33232742 + L1 LINE L1 4479 5219 -927 470 127 7 72 chr21 1674829 1675125 -33232445 + (CCCTAA)n Simple_repeat Simple_repeat 1 276 0 2908 155 2 14 chr21 1675269 1675786 -33231784 - TAR1 Satellite telomeric -43 2068 1558 387 275 33 0 chr21 1677049 1677169 -33230401 + MIR SINE MIR 84 207 -55 236 30 30 0 chr21 1677378 1677411 -33230159 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 520 285 40 7 chr21 1678388 1678539 -33229031 - MIR3 SINE MIR -34 174 19 353 286 29 21 chr21 1678796 1678936 -33228634 - MIR SINE MIR -87 175 35 214 208 0 21 chr21 1679193 1679241 -33228329 + MIR SINE MIR 206 252 -10 270 284 51 60 chr21 1679891 1679991 -33227579 + MIR3 SINE MIR 79 178 -30 563 251 221 5 chr21 1680531 1680730 -33226840 - MIR SINE MIR -7 255 14 2335 92 0 3 chr21 1681159 1681462 -33226108 - AluSg SINE Alu -8 302 1 203 274 105 21 chr21 1682150 1682245 -33225325 + L2 LINE L2 3211 3313 0 550 314 41 18 chr21 1682547 1682767 -33224803 + MIR SINE MIR 2 226 -36 1192 138 33 38 chr21 1682889 1683099 -33224471 - AluJo SINE Alu -98 214 6 276 70 0 131 chr21 1683563 1683762 -33223808 + (TGGGGG)n Simple_repeat Simple_repeat 4 176 0 288 173 74 0 chr21 1683763 1683844 -33223726 + (TGGG)n Simple_repeat Simple_repeat 3 89 0 639 241 99 0 chr21 1684526 1684667 -33222903 + FRAM SINE Alu 1 155 -21 2076 122 0 3 chr21 1684669 1684963 -33222607 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 1685239 1685261 -33222309 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 1685336 1685360 -33222210 + AT_rich Low_complexity Low_complexity 1 24 0 360 363 112 35 chr21 1685625 1685884 -33221686 + L1MDb LINE L1 365 643 -5766 393 261 102 25 chr21 1685969 1686126 -33221444 + L1MDb LINE L1 454 622 -5787 302 249 36 36 chr21 1687599 1687764 -33219806 - HSREP522 Satellite telomeric -290 232 68 334 271 43 53 chr21 1687877 1688180 -33219390 - HSREP522 Satellite telomeric -111 411 112 229 310 17 35 chr21 1689415 1689589 -33217981 + GA-rich Low_complexity Low_complexity 5 175 0 334 183 0 14 chr21 1690362 1690433 -33217137 - L1 LINE L1 -3308 2838 2769 219 36 0 0 chr21 1690440 1690468 -33217102 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1721 142 32 4 chr21 1690468 1690744 -33216826 - AluSx SINE Alu -27 285 2 2254 218 14 10 chr21 1690744 1691239 -33216331 - L1 LINE L1 -2203 3943 3447 1675 243 16 0 chr21 1691241 1691612 -33215958 - MSTB LTR MaLR -49 377 1 3237 204 21 3 chr21 1691612 1692233 -33215337 - MSTB-int LTR MaLR 0 1651 1020 4555 273 37 26 chr21 1692235 1693804 -33213766 - L1P LINE L1 -2696 3450 1860 2045 142 0 0 chr21 1693804 1694099 -33213471 + AluSx SINE Alu 1 295 -17 4555 273 37 26 chr21 1694099 1694224 -33213346 - L1P LINE L1 -4286 1860 1738 5596 128 41 53 chr21 1694237 1697009 -33210561 + SVA Other Other 433 1384 -2 351 0 0 0 chr21 1697038 1697077 -33210493 + (TG)n Simple_repeat Simple_repeat 2 40 0 323 310 63 7 chr21 1698464 1698606 -33208964 + L2 LINE L2 2722 2871 -443 359 273 0 0 chr21 1699412 1699500 -33208070 - L1MC4 LINE L1 -1339 6703 6616 22 56 0 0 chr21 1702390 1702426 -33205144 + AT_rich Low_complexity Low_complexity 1 36 0 617 308 85 21 chr21 1702565 1702896 -33204674 + L1ME4a LINE L1 5510 5861 -260 338 282 86 0 chr21 1703347 1703464 -33204106 - L2 LINE L2 0 3313 3187 1229 348 34 38 chr21 1703678 1704264 -33203306 + L1MEc LINE L1 365 948 -5773 248 231 58 70 chr21 1704334 1704490 -33203080 + L1MEc LINE L1 1298 1451 -5270 622 236 19 66 chr21 1704643 1704855 -33202715 + L1MEc LINE L1 2269 2470 -4251 1314 246 55 28 chr21 1704835 1704884 -33202686 + L1MEc LINE L1 2350 2396 -4144 303 28 0 0 chr21 1704884 1704920 -33202650 + (TA)n Simple_repeat Simple_repeat 1 36 0 1314 246 55 28 chr21 1704920 1705518 -33202052 + L1MEc LINE L1 2396 3016 -3524 1099 292 45 35 chr21 1705535 1705935 -33201635 + L1MEc LINE L1 3116 3519 -3021 1413 244 20 11 chr21 1705948 1706305 -33201265 + MLT1A1 LTR MaLR 6 365 0 4216 82 6 10 chr21 1706575 1707547 -33200023 + L1P2 LINE L1 4851 5816 -338 180 0 0 0 chr21 1708137 1708157 -33199413 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1039 41 0 0 chr21 1708159 1708303 -33199267 - AluY SINE Alu 0 304 161 449 154 11 0 chr21 1708335 1708426 -33199144 + (CA)n Simple_repeat Simple_repeat 1 92 0 24 85 0 0 chr21 1709832 1709891 -33197679 + AT_rich Low_complexity Low_complexity 1 59 0 332 213 0 27 chr21 1710583 1710658 -33196912 + MER5A DNA MER1_type 9 81 -108 1696 164 43 16 chr21 1711417 1711721 -33195849 - AluSx SINE Alu 0 312 1 23 33 0 0 chr21 1711723 1711753 -33195817 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr21 1712278 1712306 -33195264 + AT_rich Low_complexity Low_complexity 1 28 0 257 305 81 46 chr21 1713115 1713312 -33194258 - MIR SINE MIR -50 212 9 1937 101 0 4 chr21 1713939 1714197 -33193373 - AluY SINE Alu -5 306 50 21 57 0 0 chr21 1715985 1716020 -33191550 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr21 1716855 1716900 -33190670 + AT_rich Low_complexity Low_complexity 1 45 0 725 249 61 0 chr21 1717167 1717364 -33190206 - L1MA4 LINE L1 -4 6296 6088 24 0 0 0 chr21 1717450 1717474 -33190096 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr21 1717722 1717745 -33189825 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 1718312 1718346 -33189224 + AT_rich Low_complexity Low_complexity 1 34 0 1723 68 0 5 chr21 1718516 1718735 -33188835 + AluY SINE Alu 84 301 -10 1822 148 34 3 chr21 1718745 1719043 -33188527 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr21 1719056 1719081 -33188489 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr21 1719211 1719239 -33188331 + AT_rich Low_complexity Low_complexity 1 28 0 644 202 9 0 chr21 1719773 1719887 -33187683 - FLAM_A SINE Alu -15 118 4 2355 60 10 3 chr21 1720764 1721063 -33186507 - AluY SINE Alu -10 301 1 219 198 8 83 chr21 1722818 1722939 -33184631 + A-rich Low_complexity Low_complexity 5 116 0 398 378 5 15 chr21 1723403 1723599 -33183971 + MIR SINE MIR 63 256 -6 555 209 0 27 chr21 1723762 1723872 -33183698 + FLAM_A SINE Alu 4 110 -32 1032 189 53 66 chr21 1724335 1724579 -33182991 - MER21A LTR ERV1 -24 907 667 3149 194 49 23 chr21 1724573 1725232 -33182338 + MER44D DNA MER2_type 30 705 0 324 0 0 0 chr21 1725238 1725274 -33182296 + (TG)n Simple_repeat Simple_repeat 1 36 0 477 50 0 0 chr21 1725273 1725333 -33182237 + (GA)n Simple_repeat Simple_repeat 1 60 0 376 353 66 21 chr21 1725686 1725972 -33181598 + L2 LINE L2 2026 2324 -990 23 0 0 0 chr21 1726205 1726228 -33181342 + AT_rich Low_complexity Low_complexity 1 23 0 1645 215 55 27 chr21 1726285 1726761 -33180809 + LTR22B LTR ERVK 1 458 0 1800 122 25 7 chr21 1726765 1727044 -33180526 + HERVK22 LTR ERVK 12 295 -6542 817 247 54 0 chr21 1727052 1727238 -33180332 + MER58A DNA MER1_type 29 224 0 600 188 17 0 chr21 1727507 1727624 -33179946 + AluSp/q SINE Alu 171 289 -24 1739 160 21 4 chr21 1727993 1728297 -33179273 - AluSq SINE Alu 0 309 1 22 35 0 0 chr21 1729719 1729748 -33177822 + AT_rich Low_complexity Low_complexity 1 29 0 1602 195 7 0 chr21 1729869 1730161 -33177409 + AluSx SINE Alu 3 296 -16 19252 33 0 0 chr21 1730161 1733262 -33174308 + L1PA2 LINE L1 3054 6155 0 23 33 0 0 chr21 1734237 1734267 -33173303 + AT_rich Low_complexity Low_complexity 1 30 0 3499 57 15 4 chr21 1734550 1735005 -33172565 - L1PA4 LINE L1 0 6155 5696 1899 130 14 3 chr21 1735007 1735300 -33172270 - AluY SINE Alu -15 296 1 309 227 0 0 chr21 1736206 1736272 -33171298 + MER5A DNA MER1_type 16 81 -108 1996 110 0 0 chr21 1740142 1740415 -33167155 + AluY SINE Alu 1 273 -38 1615 188 17 3 chr21 1740529 1740821 -33166749 - AluSx SINE Alu -16 296 1 369 0 0 0 chr21 1741006 1741047 -33166523 + (CA)n Simple_repeat Simple_repeat 1 41 0 6586 74 31 3 chr21 1741857 1742727 -33164843 + MER11D LTR ERVK 1 894 -3 1624 187 0 7 chr21 1743851 1744145 -33163425 + AluSg SINE Alu 3 294 -16 289 354 127 25 chr21 1744773 1744931 -33162639 - L2 LINE L2 -2917 397 224 745 250 0 0 chr21 1745694 1745850 -33161720 - MER6B DNA MER2_type -54 156 1 1643 95 110 26 chr21 1746247 1746520 -33161050 + L1PA13 LINE L1 5861 6156 -7 1473 162 3 86 chr21 1746537 1746864 -33160706 + AluJb SINE Alu 3 302 -10 407 139 39 132 chr21 1747072 1747201 -33160369 + MLT1D LTR MaLR 92 208 -297 1258 242 21 3 chr21 1747207 1747496 -33160074 + AluJo SINE Alu 5 298 -14 1131 192 131 27 chr21 1747746 1748006 -33159564 + AluJo SINE Alu 1 287 -15 243 0 0 0 chr21 1748009 1748036 -33159534 + (GA)n Simple_repeat Simple_repeat 2 28 0 690 229 7 0 chr21 1748037 1748177 -33159393 - AluJo SINE Alu -148 164 24 1477 194 7 14 chr21 1748270 1748564 -33159006 + AluJb SINE Alu 1 292 -20 321 279 13 0 chr21 1748565 1748644 -33158926 + L1MB8 LINE L1 5495 5574 -588 683 202 0 31 chr21 1748670 1748799 -33158771 - FLAM_A SINE Alu -8 125 1 2671 214 22 26 chr21 1748799 1749420 -33158150 + L1MB8 LINE L1 5555 6173 -5 1572 172 3 35 chr21 1749441 1749731 -33157839 + AluJo SINE Alu 1 281 -31 1189 122 0 6 chr21 1749749 1749913 -33157657 + AluSq SINE Alu 1 163 -150 1484 133 0 5 chr21 1749926 1750144 -33157426 + AluSg/x SINE Alu 77 293 -17 277 255 11 11 chr21 1750167 1750261 -33157309 - LTR37A LTR ERV1 -93 333 240 1356 210 3 21 chr21 1750426 1750717 -33156853 - AluJo SINE Alu -26 286 1 648 210 0 8 chr21 1750748 1750872 -33156698 - FLAM_C SINE Alu -20 123 1 1326 254 78 18 chr21 1750972 1751461 -33156109 + L2 LINE L2 2458 2975 -339 1713 186 44 0 chr21 1751582 1751878 -33155692 - AluJo SINE Alu -3 309 1 1508 184 19 61 chr21 1751879 1752238 -33155332 - MLT1D LTR MaLR 0 505 162 690 193 0 0 chr21 1752238 1752357 -33155213 + AluJo SINE Alu 2 120 -192 1546 212 10 7 chr21 1752381 1752688 -33154882 + AluJo SINE Alu 1 308 -4 322 260 14 0 chr21 1752689 1752762 -33154808 + MER21B LTR ERV1 17 90 -773 715 160 53 124 chr21 1752856 1753081 -33154489 + MER58 DNA MER1_type 2189 2397 -23 237 260 117 26 chr21 1753096 1753173 -33154397 + L3 LINE CR1 1186 1269 -308 839 240 0 31 chr21 1753250 1753446 -33154124 + AluJo SINE Alu 108 297 -15 2162 105 7 0 chr21 1753543 1753837 -33153733 + AluSc SINE Alu 1 296 -13 1578 196 33 0 chr21 1753837 1754169 -33153401 + L1MB4 LINE L1 5332 5674 -506 2034 169 14 41 chr21 1754242 1754685 -33152885 + L1MB4 LINE L1 5693 6123 -57 195 227 0 0 chr21 1754811 1754855 -33152715 - MIR SINE MIR -152 110 67 252 204 0 0 chr21 1755553 1755602 -33151968 - MIR SINE MIR -56 206 158 2719 52 26 0 chr21 1755618 1755963 -33151607 - L1PA7 LINE L1 -30 6124 5771 1312 156 45 0 chr21 1756156 1756380 -33151190 - LOR1a LTR ERV1 0 497 264 1691 118 12 20 chr21 1756966 1757129 -33150441 - AluSq SINE Alu -23 290 128 228 35 0 0 chr21 1757129 1757158 -33150412 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1691 118 12 20 chr21 1757158 1757248 -33150322 - AluSq SINE Alu -185 128 39 548 200 0 0 chr21 1757248 1757343 -33150227 - FLAM_A SINE Alu -27 115 21 259 261 0 15 chr21 1757381 1757446 -33150124 + L1ME1 LINE L1 3492 3555 -2591 2010 228 77 57 chr21 1757651 1758394 -33149176 + L1ME1 LINE L1 5408 6165 -1 22 0 0 0 chr21 1758671 1758693 -33148877 + AT_rich Low_complexity Low_complexity 1 22 0 235 258 32 0 chr21 1759314 1759376 -33148194 + L1MB7 LINE L1 5885 5948 -236 1902 134 7 7 chr21 1759400 1759710 -33147860 + AluSx SINE Alu 1 312 0 523 129 20 50 chr21 1759740 1759841 -33147729 + L1MA4A LINE L1 6059 6156 -147 1589 143 53 0 chr21 1760821 1761066 -33146504 + AluSx SINE Alu 41 298 -14 279 104 0 0 chr21 1761493 1761541 -33146029 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 479 273 16 0 chr21 1761655 1761783 -33145787 + L1MC4 LINE L1 7770 7899 -143 585 231 8 0 chr21 1762322 1762439 -33145131 - FLAM_C SINE Alu -25 118 1 1624 205 3 0 chr21 1763079 1763367 -33144203 - AluJo SINE Alu -17 295 7 441 221 0 0 chr21 1763640 1763717 -33143853 + AluJ/FLAM SINE Alu 3 79 -233 1554 254 47 4 chr21 1763718 1764203 -33143367 + L1M4 LINE L1 4855 5360 -786 473 214 60 71 chr21 1764207 1764274 -33143296 + L1MB7 LINE L1 5040 5106 -1040 2186 117 7 0 chr21 1764274 1764574 -33142996 + AluY SINE Alu 1 302 -9 473 214 60 71 chr21 1764574 1764674 -33142896 + L1MB7 LINE L1 5106 5205 -941 1822 216 58 66 chr21 1764776 1764944 -33142626 + L1MB7 LINE L1 5221 5389 -795 1601 164 3 50 chr21 1764944 1765242 -33142328 + AluJb SINE Alu 22 305 -7 1822 216 58 66 chr21 1765242 1765934 -33141636 + L1MB7 LINE L1 5389 6175 -9 1515 211 24 14 chr21 1767795 1768084 -33139486 + AluJo SINE Alu 1 292 -20 844 205 141 25 chr21 1768204 1768487 -33139083 + MER33 DNA MER1_type 8 323 -1 468 214 54 9 chr21 1769152 1769264 -33138306 - Tigger1 DNA MER2_type 0 2418 2302 10611 147 27 24 chr21 1769262 1769561 -33138009 - Tigger1 DNA MER2_type -374 2044 1748 2226 110 13 0 chr21 1769561 1769860 -33137710 - AluSp SINE Alu -10 303 1 10611 147 27 24 chr21 1769860 1770139 -33137431 - Tigger1 DNA MER2_type -670 1748 1471 2164 123 0 0 chr21 1770139 1770432 -33137138 - AluSc SINE Alu -16 293 1 10611 147 27 24 chr21 1770432 1770466 -33137104 - Tigger1 DNA MER2_type -947 1471 1439 1281 207 24 30 chr21 1770466 1770761 -33136809 + AluJb SINE Alu 1 293 -19 10611 147 27 24 chr21 1770761 1772158 -33135412 - Tigger1 DNA MER2_type -979 1439 26 1921 155 3 17 chr21 1772738 1773034 -33134536 + AluSx SINE Alu 1 292 -20 1833 131 13 34 chr21 1773378 1773504 -33134066 + AluSg SINE Alu 3 130 -180 264 59 0 0 chr21 1773504 1773538 -33134032 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1833 131 13 34 chr21 1773538 1773709 -33133861 + AluSg SINE Alu 130 294 -16 238 163 0 0 chr21 1774220 1774263 -33133307 - L1MC/D LINE L1 -2002 5806 5764 27 29 0 0 chr21 1774679 1774713 -33132857 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr21 1775562 1775588 -33131982 + AT_rich Low_complexity Low_complexity 1 26 0 673 210 45 13 chr21 1775793 1775950 -33131620 + AluJb SINE Alu 137 298 -14 758 200 0 0 chr21 1776082 1776207 -33131363 + FLAM_C SINE Alu 1 125 -8 1113 219 17 9 chr21 1776223 1776456 -33131114 + AluJo SINE Alu 1 235 -77 2451 70 0 7 chr21 1776505 1776804 -33130766 - AluY SINE Alu -14 297 1 1789 174 23 0 chr21 1776974 1777273 -33130297 + AluSx SINE Alu 1 306 -6 1653 207 6 6 chr21 1778417 1778769 -33128801 + L1MB3 LINE L1 5480 5831 -352 752 171 0 0 chr21 1778769 1778886 -33128684 + FLAM_C SINE Alu 1 117 -16 274 178 0 6 chr21 1778929 1778995 -33128575 + L1PB4 LINE L1 6091 6143 -13 302 265 76 117 chr21 1779072 1779336 -33128234 + L1M2a LINE L1 220 472 -6696 1216 318 39 65 chr21 1779457 1780569 -33127001 + L1P4 LINE L1 1229 2152 -5429 6561 253 19 16 chr21 1780568 1782515 -33125055 + L1P4 LINE L1 2570 4534 -3050 1964 149 24 0 chr21 1782515 1782811 -33124759 - AluSx SINE Alu -7 305 3 6561 253 19 16 chr21 1782811 1783413 -33124157 + L1P4 LINE L1 4534 5133 -2451 2097 135 0 3 chr21 1783423 1783720 -33123850 + AluSq SINE Alu 1 296 -17 552 110 71 0 chr21 1783720 1783993 -33123577 + (TA)n Simple_repeat Simple_repeat 1 292 0 4503 215 44 17 chr21 1784039 1784967 -33122603 + L1P4 LINE L1 5190 6092 -1511 7607 22 0 2 chr21 1784967 1786106 -33121464 + L1PA3 LINE L1 5043 6155 0 4503 215 44 17 chr21 1786106 1786179 -33121391 + L1P4 LINE L1 6092 6162 -1441 2169 117 10 0 chr21 1786179 1786486 -33121084 + AluSq SINE Alu 4 313 0 4503 215 44 17 chr21 1786486 1787289 -33120281 + L1P4 LINE L1 6162 7159 -444 290 195 34 2 chr21 1787333 1787407 -33120163 + L1MA6 LINE L1 5705 5780 -374 2340 165 47 2 chr21 1787532 1788022 -33119548 + L1MA6 LINE L1 5789 6300 0 1898 138 0 64 chr21 1788027 1788236 -33119334 + AluSx SINE Alu 1 183 -129 7658 26 0 0 chr21 1788236 1789938 -33117632 + L1PA3 LINE L1 4471 6155 0 1898 138 0 64 chr21 1789938 1790055 -33117515 + AluSx SINE Alu 183 306 -6 1468 261 34 11 chr21 1790055 1790499 -33117071 + L1MCa LINE L1 277 730 -5834 319 283 0 19 chr21 1790588 1790694 -33116876 + L1MCa LINE L1 516 619 -5426 2271 100 0 0 chr21 1791434 1791734 -33115836 + AluY SINE Alu 1 300 -11 183 80 0 0 chr21 1792097 1792122 -33115448 + (T)n Simple_repeat Simple_repeat 1 25 0 1971 118 52 0 chr21 1792919 1793208 -33114362 - AluSg SINE Alu -6 304 1 1892 186 72 20 chr21 1793481 1793954 -33113616 - L1MA9 LINE L1 -20 6292 5790 285 29 0 0 chr21 1793954 1793988 -33113582 + (CA)n Simple_repeat Simple_repeat 1 34 0 1892 186 72 20 chr21 1793988 1794015 -33113555 - L1MA9 LINE L1 -522 5790 5766 714 261 68 0 chr21 1794037 1794198 -33113372 - AluJo SINE Alu -54 258 87 1917 127 7 0 chr21 1794198 1794473 -33113097 - AluSg SINE Alu -33 277 1 1390 208 12 6 chr21 1794474 1794801 -33112769 - L1MA9 LINE L1 -585 5727 5399 2393 240 48 34 chr21 1794861 1795603 -33111967 - L1MA9 LINE L1 -836 5310 4551 2262 121 0 0 chr21 1795603 1795910 -33111660 - AluSc SINE Alu -2 307 1 2393 240 48 34 chr21 1795910 1796054 -33111516 - L1MA9 LINE L1 -1595 4551 4411 250 128 0 0 chr21 1796054 1796093 -33111477 + MADE1 DNA Mariner 1 39 -41 526 232 30 6 chr21 1796096 1796260 -33111310 - L1M4 LINE L1 -1728 4418 4251 357 43 0 0 chr21 1796644 1796691 -33110879 + (TG)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr21 1797157 1797187 -33110383 + AT_rich Low_complexity Low_complexity 1 30 0 793 274 77 17 chr21 1797463 1797981 -33109589 + L1M4 LINE L1 3742 4290 -1856 1817 116 4 32 chr21 1798043 1798320 -33109250 + AluSx SINE Alu 37 305 -7 1443 148 124 16 chr21 1798530 1798825 -33108745 - AluSx SINE Alu 0 323 1 849 125 56 24 chr21 1798825 1799036 -33108534 + MER6 DNA MER2_type 633 865 0 2285 104 0 7 chr21 1799581 1799879 -33107691 - AluSc SINE Alu -13 296 1 1984 155 14 0 chr21 1800150 1800465 -33107105 + AluSx SINE Alu 1 312 0 32 26 0 0 chr21 1800724 1800763 -33106807 + AT_rich Low_complexity Low_complexity 1 39 0 476 138 11 0 chr21 1800769 1800863 -33106707 + L1PB1 LINE L1 6056 6150 -1 182 91 30 0 chr21 1800881 1800914 -33106656 + A-rich Low_complexity Low_complexity 3 36 0 1648 197 3 10 chr21 1801134 1801433 -33106137 + AluJb SINE Alu 1 297 -15 395 206 0 0 chr21 1801434 1801507 -33106063 + L1MB8 LINE L1 5499 5571 -613 614 208 0 54 chr21 1801510 1801659 -33105911 - FLAM_A SINE Alu -1 141 1 2041 213 38 58 chr21 1801659 1802227 -33105343 + L1MB8 LINE L1 5555 6110 -68 1531 222 0 0 chr21 1802227 1802533 -33105037 - AluJb SINE Alu -6 306 1 2041 213 38 58 chr21 1802533 1802598 -33104972 + L1MB8 LINE L1 6110 6175 -3 2216 126 3 3 chr21 1802600 1802909 -33104661 + AluSx SINE Alu 1 309 -3 1676 176 0 23 chr21 1802924 1803226 -33104344 + AluJo SINE Alu 11 305 -7 1084 191 0 22 chr21 1803481 1803659 -33103911 - AluJb SINE Alu -137 175 2 854 242 80 36 chr21 1803662 1803730 -33103840 + MER21B LTR ERV1 426 490 -441 1638 187 3 23 chr21 1803730 1804030 -33103540 + AluJo SINE Alu 6 299 -13 854 242 80 36 chr21 1804030 1804304 -33103266 + MER21B LTR ERV1 490 848 -83 2088 130 0 10 chr21 1804595 1804896 -33102674 + AluSg SINE Alu 1 298 -12 1479 207 35 3 chr21 1805472 1805810 -33101760 + L1MB4 LINE L1 5480 5828 -355 698 215 0 0 chr21 1805812 1805933 -33101637 + FLAM_C SINE Alu 1 121 -22 522 0 0 0 chr21 1805933 1805991 -33101579 + (TA)n Simple_repeat Simple_repeat 2 59 0 587 140 53 0 chr21 1806003 1806117 -33101453 + L1MB4 LINE L1 5820 5939 -241 2341 87 0 3 chr21 1806118 1806417 -33101153 + AluY SINE Alu 1 298 -13 2102 143 0 0 chr21 1806452 1806752 -33100818 + AluSc SINE Alu 1 300 -9 247 213 0 49 chr21 1807723 1807784 -33099786 + GA-rich Low_complexity Low_complexity 1 58 0 324 64 0 0 chr21 1807843 1807890 -33099680 + (CA)n Simple_repeat Simple_repeat 2 48 0 242 143 20 0 chr21 1808051 1808100 -33099470 + CT-rich Low_complexity Low_complexity 2 51 0 220 284 99 62 chr21 1808213 1808291 -33099279 + MIR SINE MIR 29 103 -159 2391 172 24 0 chr21 1808291 1808709 -33098861 - MSTA LTR MaLR 0 428 1 220 284 99 62 chr21 1808709 1808792 -33098778 + MIR SINE MIR 103 196 -66 21 36 0 0 chr21 1809765 1809793 -33097777 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr21 1810151 1810188 -33097382 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr21 1811547 1811592 -33095978 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 1811780 1811826 -33095744 + AT_rich Low_complexity Low_complexity 1 46 0 197 321 161 0 chr21 1813350 1813431 -33094139 + MIR SINE MIR 118 211 -51 543 256 222 0 chr21 1813923 1814103 -33093467 - MER58A DNA MER1_type -4 220 1 3681 112 14 12 chr21 1814440 1815003 -33092567 + LTR6A LTR ERV1 1 564 0 22 0 0 0 chr21 1816145 1816167 -33091403 + AT_rich Low_complexity Low_complexity 1 22 0 2211 91 30 0 chr21 1816886 1817183 -33090387 + AluY SINE Alu 1 306 -5 2073 131 7 3 chr21 1817491 1817796 -33089774 + AluSx SINE Alu 1 306 -6 2338 110 0 0 chr21 1818089 1818398 -33089172 - AluSg1 SINE Alu 0 309 1 332 217 75 0 chr21 1818867 1818987 -33088583 - L1MC4 LINE L1 0 8042 7914 392 294 53 4 chr21 1819039 1819301 -33088269 + L1M4 LINE L1 2890 3164 -2982 319 306 18 0 chr21 1819428 1819598 -33087972 - L1M4 LINE L1 -3267 2879 2707 5115 165 34 19 chr21 1819747 1820068 -33087502 - L1PB2 LINE L1 -4 6147 5832 267 31 0 0 chr21 1820068 1820100 -33087470 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2067 138 0 0 chr21 1820103 1820386 -33087184 - AluSq SINE Alu -30 283 1 5115 165 34 19 chr21 1820386 1821752 -33085818 - L1PB2 LINE L1 -320 5831 4430 470 144 54 36 chr21 1821771 1821938 -33085632 + (CATATA)n Simple_repeat Simple_repeat 4 173 0 604 138 63 6 chr21 1821928 1822264 -33085306 + (TATATG)n Simple_repeat Simple_repeat 1 355 0 731 172 7 31 chr21 1822321 1822613 -33084957 + (CATATA)n Simple_repeat Simple_repeat 1 285 0 594 173 29 6 chr21 1822613 1822786 -33084784 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 2241 208 56 5 chr21 1822786 1823362 -33084208 - L1PB2 LINE L1 -1747 4399 3795 455 290 39 0 chr21 1823358 1823565 -33084005 - L1M4 LINE L1 -3597 2549 2335 2739 179 5 4 chr21 1823917 1824469 -33083101 - L1PA12 LINE L1 -1131 5015 4463 5850 113 17 2 chr21 1824471 1825609 -33081961 + L1PA12 LINE L1 5026 6168 0 276 77 0 0 chr21 1825814 1825853 -33081717 + (TA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr21 1825922 1825944 -33081626 + AT_rich Low_complexity Low_complexity 1 22 0 697 192 26 75 chr21 1826021 1826287 -33081283 + L1M1 LINE L1 3245 3497 -4068 2326 221 60 42 chr21 1826322 1827511 -33080059 + L1M1 LINE L1 3460 4700 -2865 1634 157 15 7 chr21 1827522 1827796 -33079774 + AluSx SINE Alu 1 276 -36 689 185 36 21 chr21 1827796 1827981 -33079589 - MER41-int LTR ERV1 -3111 2475 1839 1330 186 22 4 chr21 1827980 1828249 -33079321 - MER41-int LTR ERV1 -3592 2354 2081 387 250 0 24 chr21 1829487 1829611 -33077959 + GA-rich Low_complexity Low_complexity 3 123 0 235 275 72 21 chr21 1830812 1831005 -33076565 - HSREP522 Satellite telomeric -291 231 29 4282 198 38 62 chr21 1833135 1833856 -33073714 - L1 LINE L1 -814 6751 6076 2144 124 0 0 chr21 1833856 1834154 -33073416 - AluSg SINE Alu -12 298 1 4282 198 38 62 chr21 1834154 1834811 -33072759 - L1 LINE L1 -1489 6076 5405 1591 283 75 57 chr21 1834794 1835017 -33072553 - L1 LINE L1 -5176 2389 2172 2139 143 0 0 chr21 1835017 1835317 -33072253 - AluSx SINE Alu -10 302 3 1591 283 75 57 chr21 1835317 1836758 -33070812 - L1 LINE L1 -5393 2172 17 2132 271 54 10 chr21 1836756 1837663 -33069907 - L1M4 LINE L1 -1635 4511 3565 2008 142 3 0 chr21 1838080 1838383 -33069187 - AluSx SINE Alu -8 304 1 1569 211 3 10 chr21 1839560 1839863 -33067707 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr21 1840100 1840121 -33067449 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 1845804 1845854 -33061716 + AT_rich Low_complexity Low_complexity 1 50 0 30 45 0 0 chr21 1847326 1847370 -33060200 + AT_rich Low_complexity Low_complexity 1 44 0 728 176 24 6 chr21 1847560 1847730 -33059840 + L1MB2 LINE L1 5998 6170 -1 1994 141 0 0 chr21 1847832 1848116 -33059454 + AluSx SINE Alu 1 284 -28 231 88 0 0 chr21 1848116 1848150 -33059420 + (CATA)n Simple_repeat Simple_repeat 2 35 0 464 136 0 0 chr21 1848468 1848534 -33059036 + AluS SINE Alu 1 66 -247 4935 224 15 9 chr21 1848556 1849844 -33057726 - L1PA15-16 LINE L1 -3891 2958 1664 1966 234 54 6 chr21 1851331 1852012 -33055558 - L1M4 LINE L1 -3119 3027 2314 436 262 67 20 chr21 1852029 1852178 -33055392 + MER31B LTR ERV1 85 240 -226 3419 113 6 2 chr21 1852178 1852681 -33054889 + MER41A-int LTR ERV1 5439 5943 -3 3819 103 20 2 chr21 1852681 1853223 -33054347 + MER41A LTR ERV1 1 552 -2 912 230 14 19 chr21 1853535 1853748 -33053822 + MER58C DNA MER1_type 4 215 0 2559 149 50 28 chr21 1853839 1854374 -33053196 - LTR10A LTR ERV1 -62 547 1 11613 220 19 42 chr21 1854421 1857443 -33050127 - LTR10A-int LTR ERV1 -1 6648 3695 2225 60 6 0 chr21 1857419 1857734 -33049836 - LTR10A-int LTR ERV1 -4319 2577 2261 835 242 85 7 chr21 1860974 1861267 -33046303 + L1ME3A LINE L1 5854 6169 -1 1458 172 52 43 chr21 1862108 1862434 -33045136 - MER44D DNA MER2_type -6 603 5 240 261 46 0 chr21 1863050 1863115 -33044455 - L2 LINE L2 -1 3271 3204 23 0 0 0 chr21 1864605 1864628 -33042942 + AT_rich Low_complexity Low_complexity 1 23 0 625 144 0 76 chr21 1864831 1864963 -33042607 + L1PB3 LINE L1 6033 6154 0 25 0 0 0 chr21 1864963 1864988 -33042582 + AT_rich Low_complexity Low_complexity 1 25 0 190 370 20 20 chr21 1864999 1865099 -33042471 + MIR SINE MIR 33 132 -76 24 32 0 0 chr21 1865186 1865217 -33042353 + AT_rich Low_complexity Low_complexity 1 31 0 202 91 45 23 chr21 1865367 1865411 -33042159 + (TCTCTG)n Simple_repeat Simple_repeat 1 45 0 1544 208 31 29 chr21 1866154 1866567 -33041003 - L1MC3 LINE L1 -1722 6063 5650 860 287 36 17 chr21 1866593 1867013 -33040557 - L1MEc LINE L1 -3655 2560 2171 276 167 30 0 chr21 1867033 1867099 -33040471 - L1M1 LINE L1 -4609 2956 2889 318 306 56 32 chr21 1867160 1867376 -33040194 - L1MEc LINE L1 -4865 1531 1311 435 311 17 6 chr21 1867385 1867562 -33040008 - L1MEc LINE L1 -5126 1270 1092 21 0 0 0 chr21 1867622 1867643 -33039927 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 1867889 1867910 -33039660 + AT_rich Low_complexity Low_complexity 1 21 0 2149 103 3 3 chr21 1868012 1868428 -33039142 - AluSp SINE Alu 0 416 1 231 36 0 0 chr21 1868627 1868655 -33038915 + (TTG)n Simple_repeat Simple_repeat 3 30 0 564 344 45 35 chr21 1868669 1868957 -33038613 - L1MEc LINE L1 -6069 327 37 2667 29 3 0 chr21 1868970 1869279 -33038291 - AluY SINE Alu -1 310 1 3556 212 44 23 chr21 1869338 1870431 -33037139 - L1MB7 LINE L1 -26 6656 5540 2009 248 44 38 chr21 1870418 1871009 -33036561 - L1MB7 LINE L1 -3174 3470 2884 2177 19 16 0 chr21 1871009 1871267 -33036303 + L1PA4 LINE L1 5878 6139 -16 270 0 0 0 chr21 1871267 1871297 -33036273 + (TA)n Simple_repeat Simple_repeat 1 30 0 2009 248 44 38 chr21 1871297 1871582 -33035988 - L1MB7 LINE L1 -3759 2885 2589 555 240 53 38 chr21 1871666 1872044 -33035526 - L1MB7 LINE L1 -4190 2456 1984 549 247 25 12 chr21 1872058 1872220 -33035350 - L1MB7 LINE L1 -6377 165 2 2606 159 16 52 chr21 1872256 1872808 -33034762 + L1PA16 LINE L1 5635 6166 0 401 306 56 86 chr21 1873052 1873460 -33034110 - L1 LINE L1 -2138 4008 3613 31 26 0 0 chr21 1874339 1874377 -33033193 + AT_rich Low_complexity Low_complexity 1 38 0 612 172 0 0 chr21 1874377 1874476 -33033094 - AluJb SINE Alu -30 282 184 23 0 0 0 chr21 1874828 1874851 -33032719 + AT_rich Low_complexity Low_complexity 1 23 0 1240 224 57 33 chr21 1875996 1876327 -33031243 - MER2 DNA MER2_type 0 344 6 576 188 45 8 chr21 1876957 1877090 -33030480 - L1MD2 LINE L1 -425 5934 5797 647 180 8 39 chr21 1877244 1877372 -33030198 + MER63 DNA MER1_type 1 750 -312 252 338 62 12 chr21 1877561 1877721 -33029849 + MLT1H LTR MaLR 382 549 0 514 285 69 12 chr21 1878696 1878894 -33028676 + LTR33 LTR ERVL 33 216 -305 233 292 56 11 chr21 1879311 1879400 -33028170 + L2 LINE L2 2282 2374 -940 426 32 0 32 chr21 1879551 1879613 -33027957 + L1PA13 LINE L1 6102 6161 -2 3917 184 71 8 chr21 1879613 1880482 -33027088 - L1M1 LINE L1 -1813 5752 4829 3957 237 50 41 chr21 1880485 1882392 -33025178 - L1M1 LINE L1 -2773 4792 2804 2070 306 15 30 chr21 1882577 1883298 -33024272 - L1M1 LINE L1 -6455 1111 402 242 390 9 0 chr21 1883816 1883921 -33023649 + L2 LINE L2 3204 3309 -4 251 200 29 57 chr21 1883966 1884036 -33023534 - L1ME3A LINE L1 -5 6165 6098 1532 259 55 28 chr21 1884049 1884521 -33023049 - MLT1D LTR MaLR 0 505 21 335 163 98 73 chr21 1884644 1884767 -33022803 - L1ME3A LINE L1 -183 5987 5862 1001 294 64 28 chr21 1884832 1885329 -33022241 - L1ME3A LINE L1 -401 5769 5255 746 284 100 54 chr21 1885361 1885809 -33021761 - L1ME3A LINE L1 -905 5241 4773 2445 166 0 16 chr21 1885828 1886273 -33021297 - L1PA15 LINE L1 -5 6160 5723 605 191 25 38 chr21 1886401 1886558 -33021012 - L1ME3A LINE L1 -1453 4693 4539 2825 156 14 23 chr21 1886672 1887186 -33020384 - L1MA4 LINE L1 -159 6141 5633 1828 62 0 0 chr21 1887187 1887412 -33020158 - AluY SINE Alu -73 238 14 3744 164 24 47 chr21 1887413 1887868 -33019702 + L1MA5A LINE L1 5515 5945 -352 1979 111 11 4 chr21 1887868 1888167 -33019403 + AluSx SINE Alu 1 301 0 3744 164 24 47 chr21 1888167 1888511 -33019059 + L1MA5A LINE L1 5945 6296 -1 340 270 88 0 chr21 1888518 1888666 -33018904 - Charlie4a DNA MER1_type -102 406 246 6056 173 3 0 chr21 1888670 1889740 -33017830 + L1P LINE L1 3865 4937 -1209 431 340 45 20 chr21 1890915 1891115 -33016455 - MIR SINE MIR -1 261 57 7570 27 0 0 chr21 1891416 1892428 -33015142 - L1PA3 LINE L1 -3 6152 5141 17525 34 7 1 chr21 1892429 1894582 -33012988 + L1P LINE L1 2932 5098 -1048 23 0 0 0 chr21 1897889 1897912 -33009658 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr21 1898519 1898569 -33009001 + AT_rich Low_complexity Low_complexity 1 50 0 1593 176 6 35 chr21 1898824 1899143 -33008427 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr21 1899664 1899694 -33007876 + AT_rich Low_complexity Low_complexity 1 30 0 2049 97 3 52 chr21 1899823 1900131 -33007439 + AluSx SINE Alu 1 293 -19 2203 126 0 0 chr21 1900266 1900568 -33007002 + AluSg SINE Alu 1 302 -8 23 0 0 0 chr21 1901193 1901216 -33006354 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr21 1901981 1902005 -33005565 + AT_rich Low_complexity Low_complexity 1 24 0 1439 183 121 0 chr21 1902465 1902771 -33004799 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr21 1902916 1902955 -33004615 + AT_rich Low_complexity Low_complexity 1 39 0 57 79 0 0 chr21 1903216 1903343 -33004227 + AT_rich Low_complexity Low_complexity 1 127 0 1431 164 75 19 chr21 1903700 1904125 -33003445 - L1MA4A LINE L1 -23 6280 5771 2639 174 22 8 chr21 1904486 1905369 -33002201 - L1MA4A LINE L1 -556 5747 4853 275 157 0 0 chr21 1905505 1905556 -33002014 + MLT1D LTR MaLR 57 107 -398 12825 85 5 1 chr21 1905576 1908174 -32999396 + L1PA7 LINE L1 3542 6151 -3 843 211 57 14 chr21 1908180 1908389 -32999181 + MER96B DNA MER1_type? 177 394 -23 23 0 0 0 chr21 1908629 1908652 -32998918 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chr21 1908669 1908704 -32998866 + AT_rich Low_complexity Low_complexity 1 35 0 206 367 0 0 chr21 1908827 1908936 -32998634 + A-rich Low_complexity Low_complexity 1 109 0 3043 130 11 6 chr21 1909025 1909495 -32998075 + MER84 LTR ERVI 36 507 0 1042 99 0 19 chr21 1910009 1910170 -32997400 + L1P4 LINE L1 5333 5490 -671 2301 57 3 41 chr21 1910170 1910485 -32997085 + AluY SINE Alu 1 303 -8 826 276 90 33 chr21 1910650 1911049 -32996521 - L1M4 LINE L1 -1822 4324 3903 906 111 90 0 chr21 1911049 1911074 -32996496 - AluY SINE Alu -154 157 136 482 0 0 17 chr21 1911074 1911133 -32996437 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 906 111 90 0 chr21 1911133 1911251 -32996319 - AluY SINE Alu -175 136 1 381 22 0 0 chr21 1912419 1912465 -32995105 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 77 0 0 chr21 1912620 1912646 -32994924 + (A)n Simple_repeat Simple_repeat 1 26 0 2219 128 0 10 chr21 1912648 1912961 -32994609 + AluSx SINE Alu 1 310 -2 373 92 231 0 chr21 1915062 1915127 -32992443 + MADE1 DNA Mariner 1 80 0 587 266 59 25 chr21 1916532 1916735 -32990835 - MIR SINE MIR 0 262 53 764 221 23 9 chr21 1916860 1917077 -32990493 + L1MC3 LINE L1 7566 7785 0 2251 105 3 0 chr21 1917087 1917382 -32990188 + AluY SINE Alu 1 296 -15 1958 69 0 8 chr21 1917918 1918178 -32989392 + AluY SINE Alu 54 311 0 266 0 29 0 chr21 1918455 1918489 -32989081 + (CA)n Simple_repeat Simple_repeat 2 36 0 2546 61 0 3 chr21 1918999 1919311 -32988259 + AluY SINE Alu 1 311 0 234 280 0 0 chr21 1919482 1919532 -32988038 - MER58 DNA MER1_type -285 56 7 227 189 108 40 chr21 1919953 1920027 -32987543 - MLT1H LTR MaLR 0 549 471 193 242 109 70 chr21 1920491 1920619 -32986951 + MIR SINE MIR 120 252 -10 2853 277 37 31 chr21 1921126 1921551 -32986019 + L1M4 LINE L1 2252 2673 -3473 2029 110 32 36 chr21 1921551 1921678 -32985892 + AluSx SINE Alu 1 127 -185 2409 88 13 0 chr21 1921678 1921984 -32985586 + AluSp SINE Alu 1 310 -3 2029 110 32 36 chr21 1921984 1922165 -32985405 + AluSx SINE Alu 127 308 -4 2853 277 37 31 chr21 1922165 1922393 -32985177 + L1M4 LINE L1 2673 2898 -3248 2922 104 15 11 chr21 1922393 1922854 -32984716 - L1PA10 LINE L1 0 6168 5706 2853 277 37 31 chr21 1922854 1923760 -32983810 + L1M4 LINE L1 2898 3821 -2325 273 172 0 0 chr21 1923874 1923938 -32983632 + CT-rich Low_complexity Low_complexity 1 64 0 2066 73 51 0 chr21 1923938 1924212 -32983358 - AluY SINE Alu -23 288 1 227 190 50 30 chr21 1925054 1925154 -32982416 + (CACG)n Simple_repeat Simple_repeat 2 103 0 1852 160 3 3 chr21 1927102 1927395 -32980175 - AluSg1 SINE Alu -15 294 2 2046 118 7 4 chr21 1927569 1927883 -32979687 + AluSg SINE Alu 1 315 0 2531 114 13 8 chr21 1929077 1929470 -32978100 + L1PA12 LINE L1 5774 6168 0 515 266 0 27 chr21 1929792 1929976 -32977594 - MER104 DNA MER2_type -1 179 1 226 291 14 51 chr21 1930169 1930308 -32977262 - MIR3 SINE MIR -38 170 20 297 0 0 0 chr21 1931518 1931551 -32976019 + (TG)n Simple_repeat Simple_repeat 2 34 0 752 169 0 0 chr21 1932195 1932313 -32975257 + FLAM_A SINE Alu 1 118 -15 560 182 0 34 chr21 1932487 1932746 -32974824 - AluJb SINE Alu -11 301 1 189 207 121 17 chr21 1933366 1933424 -32974146 - L2 LINE L2 -50 3263 3200 24 32 0 0 chr21 1933893 1933924 -32973646 + AT_rich Low_complexity Low_complexity 1 31 0 2657 16 0 0 chr21 1934506 1934811 -32972759 + L1PA2 LINE L1 5850 6154 -1 573 189 9 9 chr21 1936956 1937062 -32970508 + U6 snRNA snRNA 1 106 -1 3021 175 8 8 chr21 1938286 1938813 -32968757 - MER1A DNA MER1_type 0 527 1 300 192 0 0 chr21 1939042 1939094 -32968476 - MER91B DNA MER1_type -60 130 79 24 32 0 0 chr21 1939571 1939602 -32967968 + AT_rich Low_complexity Low_complexity 1 31 0 187 324 28 0 chr21 1940476 1940547 -32967023 - L2 LINE L2 -565 2749 2677 859 224 47 47 chr21 1940552 1940766 -32966804 - MER58A DNA MER1_type -3 221 8 2083 153 7 0 chr21 1942544 1942851 -32964719 + AluSc SINE Alu 1 309 0 1346 192 130 55 chr21 1942962 1943454 -32964116 - LTR61 LTR ERV1 0 595 1 23 33 0 0 chr21 1943838 1943868 -32963702 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr21 1943948 1943998 -32963572 + AT_rich Low_complexity Low_complexity 1 50 0 54 49 0 0 chr21 1945041 1945123 -32962447 + AT_rich Low_complexity Low_complexity 1 82 0 180 355 9 45 chr21 1945535 1945645 -32961925 + MIR3 SINE MIR 90 195 -13 229 252 99 86 chr21 1946588 1946711 -32960859 + L1ME LINE L1 5387 5514 -607 2057 147 6 11 chr21 1946711 1947058 -32960512 - L1PA15 LINE L1 0 6165 5821 229 252 99 86 chr21 1947058 1947085 -32960485 + L1ME LINE L1 5514 5539 -582 355 200 0 0 chr21 1947669 1947734 -32959836 - MER58A DNA MER1_type 0 224 160 886 201 25 0 chr21 1947738 1947897 -32959673 - AluJb SINE Alu -18 294 132 482 198 11 0 chr21 1947917 1948008 -32959562 - MER58A DNA MER1_type -15 92 1 2513 281 105 28 chr21 1948609 1948981 -32958589 + L2 LINE L2 1777 2119 -1194 2167 133 0 0 chr21 1948981 1949282 -32958288 - AluSx SINE Alu -11 301 1 2513 281 105 28 chr21 1949282 1950041 -32957529 + L2 LINE L2 2119 3040 -273 266 352 115 39 chr21 1950399 1950581 -32956989 + L2 LINE L2 3076 3271 -1 22 0 0 0 chr21 1950715 1950737 -32956833 + AT_rich Low_complexity Low_complexity 1 22 0 1928 156 3 0 chr21 1950843 1951138 -32956432 - AluSx SINE Alu -16 296 1 23 0 0 0 chr21 1951143 1951166 -32956404 + AT_rich Low_complexity Low_complexity 1 23 0 1549 148 72 30 chr21 1952052 1952383 -32955187 + THE1C LTR MaLR 5 349 -26 2597 172 35 7 chr21 1952395 1953016 -32954554 - L1P5 LINE L1 -378 5776 5126 207 0 0 0 chr21 1953016 1953039 -32954531 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2597 172 35 7 chr21 1953039 1953100 -32954470 - L1P5 LINE L1 -1028 5126 5068 3453 209 27 11 chr21 1953100 1953987 -32953583 - L1 LINE L1 -1121 5025 4125 3067 143 24 10 chr21 1954227 1954731 -32952839 + MER1A DNA MER1_type 1 511 -18 204 125 0 0 chr21 1955121 1955153 -32952417 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr21 1955161 1955181 -32952389 + (CA)n Simple_repeat Simple_repeat 2 21 0 327 25 0 0 chr21 1955903 1955943 -32951627 + (TG)n Simple_repeat Simple_repeat 2 41 0 879 178 0 0 chr21 1955948 1956094 -32951476 - AluSg/x SINE Alu -31 279 134 7754 184 6 1 chr21 1957284 1958645 -32948925 + L1PA12 LINE L1 637 2004 -5577 460 143 0 0 chr21 1958830 1958900 -32948670 - L1PA12 LINE L1 -6251 1330 1261 282 350 144 0 chr21 1959241 1959401 -32948169 + L1PA13 LINE L1 877 1059 -5728 3108 204 0 15 chr21 1959587 1960186 -32947384 + L1PA13 LINE L1 1395 1984 -4803 664 205 0 0 chr21 1960229 1960351 -32947219 - L1PA13 LINE L1 -6177 610 489 4608 176 23 8 chr21 1960343 1961358 -32946212 + L1PA13 LINE L1 1994 3039 -3758 2477 87 0 0 chr21 1961358 1961668 -32945902 + AluY SINE Alu 1 310 -1 4608 176 23 8 chr21 1961668 1961683 -32945887 + L1PA13 LINE L1 3039 3052 -3745 2195 191 134 54 chr21 1961684 1962632 -32944938 + MER4-int LTR ERV1 29 1097 -5501 6530 90 6 6 chr21 1962640 1963711 -32943859 - L1PA7 LINE L1 -3 6151 5051 3412 113 8 4 chr21 1963737 1964250 -32943320 + L1P LINE L1 4555 5069 -1077 2657 142 2 2 chr21 1968101 1968538 -32939032 - L1P LINE L1 -3745 2401 1965 1296 219 13 36 chr21 1968708 1969010 -32938560 - AluJo SINE Alu -16 296 2 1442 201 12 5 chr21 1970014 1970483 -32937087 + L1P4 LINE L1 5027 5496 -670 28 0 0 0 chr21 1970483 1970511 -32937059 + AT_rich Low_complexity Low_complexity 1 28 0 2106 114 0 16 chr21 1970621 1970927 -32936643 + AluSg SINE Alu 1 301 -9 499 314 72 34 chr21 1971117 1971672 -32935898 - L1MEc LINE L1 -4451 2671 2096 1063 269 86 44 chr21 1972017 1972564 -32935006 - L1MEc LINE L1 -4890 1533 964 228 67 0 0 chr21 1972573 1972603 -32934967 + (TG)n Simple_repeat Simple_repeat 1 30 0 235 194 0 0 chr21 1972788 1972824 -32934746 - L1MEc LINE L1 -5661 762 727 272 299 195 6 chr21 1974050 1974224 -32933346 - MIR SINE MIR 0 262 56 818 37 0 9 chr21 1974418 1974525 -32933045 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1433 176 3 84 chr21 1974528 1974851 -32932719 - AluJb SINE Alu -15 297 1 2314 65 58 0 chr21 1975741 1976035 -32931535 - AluSp SINE Alu -2 311 1 2215 110 7 0 chr21 1976273 1976563 -32931007 - AluSq SINE Alu -21 292 1 424 263 28 68 chr21 1976694 1976910 -32930660 - MIR SINE MIR -53 209 1 2093 147 0 0 chr21 1977823 1978135 -32929435 - AluSx SINE Alu 0 312 1 808 103 0 0 chr21 1978490 1978597 -32928973 + AluSc SINE Alu 1 107 -202 2163 203 40 4 chr21 1978607 1979084 -32928486 - L1MB3 LINE L1 -44 6139 5646 750 225 78 68 chr21 1979669 1980153 -32927417 + L1M4 LINE L1 4400 4935 -1211 285 283 6 17 chr21 1982324 1982504 -32925066 + (CA)n Simple_repeat Simple_repeat 2 179 0 229 256 48 12 chr21 1982546 1982714 -32924856 + (CA)n Simple_repeat Simple_repeat 2 175 0 2232 71 0 3 chr21 1982815 1983109 -32924461 - AluY SINE Alu -18 293 1 3279 48 0 4 chr21 1984290 1984748 -32922822 + L1P2 LINE L1 4984 5438 -716 6793 143 29 12 chr21 1986237 1987807 -32919763 - L1MA1 LINE L1 -9 6293 4687 2048 142 3 0 chr21 1987957 1988253 -32919317 + AluSq SINE Alu 1 297 -16 1270 238 75 64 chr21 1988560 1989157 -32918413 - L1ME1 LINE L1 -3 6163 5560 315 0 0 0 chr21 1990335 1990374 -32917196 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr21 1990374 1990401 -32917169 + AT_rich Low_complexity Low_complexity 1 27 0 2009 196 61 28 chr21 1990931 1991436 -32916134 - L1MA7 LINE L1 -1 6290 5769 2581 208 60 28 chr21 1991440 1992088 -32915482 - L1MB8 LINE L1 -2 6176 5508 4586 190 37 16 chr21 1992082 1993603 -32913967 - L1MA7 LINE L1 -510 5781 4229 21 0 0 0 chr21 1994912 1994933 -32912637 + AT_rich Low_complexity Low_complexity 1 21 0 246 156 0 0 chr21 1996059 1996104 -32911466 + A-rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr21 1996809 1996852 -32910718 + AT_rich Low_complexity Low_complexity 1 43 0 474 230 0 9 chr21 1996877 1996990 -32910580 - L1MA7 LINE L1 -1904 4242 4131 186 43 0 0 chr21 1998287 1998310 -32909260 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 250 263 152 20 chr21 2000832 2000931 -32906639 - MIR SINE MIR -63 145 34 201 196 0 0 chr21 2001864 2001910 -32905660 + (CA)n Simple_repeat Simple_repeat 2 47 0 215 375 92 38 chr21 2002697 2002881 -32904689 - L2 LINE L2 -29 3243 3050 451 255 49 33 chr21 2002975 2003159 -32904411 + MLT1L LTR MaLR 402 588 -27 1414 224 4 4 chr21 2003786 2004063 -32903507 - AluJb SINE Alu -35 277 1 25 31 0 0 chr21 2004144 2004176 -32903394 + AT_rich Low_complexity Low_complexity 1 32 0 1967 152 121 21 chr21 2004764 2005153 -32902417 + MSTA LTR MaLR 1 428 0 1732 178 3 29 chr21 2005482 2005791 -32901779 + AluJb SINE Alu 6 306 -6 216 0 0 0 chr21 2006405 2006429 -32901141 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1038 199 5 0 chr21 2006547 2006733 -32900837 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr21 2007507 2007529 -32900041 + AT_rich Low_complexity Low_complexity 1 22 0 501 282 87 46 chr21 2007648 2007874 -32899696 + L1ME4a LINE L1 5535 5779 -342 1691 185 3 3 chr21 2007874 2008161 -32899409 - AluSx SINE Alu -24 288 2 501 282 87 46 chr21 2008161 2008257 -32899313 + L1ME4a LINE L1 5779 5870 -251 228 100 0 0 chr21 2008529 2008569 -32899001 + (CA)n Simple_repeat Simple_repeat 1 40 0 358 246 113 56 chr21 2008585 2008727 -32898843 + L1ME4a LINE L1 5969 6118 -3 1487 224 10 3 chr21 2008769 2009068 -32898502 + AluJo SINE Alu 1 301 -11 1288 178 91 8 chr21 2009152 2009405 -32898165 - LTR4 LTR ERV1 -2 594 321 1306 156 49 17 chr21 2009440 2009742 -32897828 - LTR4 LTR ERV1 -239 357 26 243 152 0 0 chr21 2010870 2010916 -32896654 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 608 246 66 6 chr21 2011011 2011178 -32896392 + MIR SINE MIR 20 196 -66 506 217 56 35 chr21 2011714 2011857 -32895713 + MLT1D LTR MaLR 48 193 -312 1245 196 0 48 chr21 2011859 2012130 -32895440 + AluJb SINE Alu 5 262 -50 1360 214 38 69 chr21 2016062 2016429 -32891141 + MER67C LTR ERV1 22 403 -234 33 43 0 0 chr21 2016867 2016914 -32890656 + AT_rich Low_complexity Low_complexity 1 47 0 232 318 47 0 chr21 2017038 2017145 -32890425 - MIR SINE MIR -71 191 80 408 257 0 19 chr21 2017293 2017398 -32890172 + L1M3e LINE L1 466 568 -6921 9055 240 35 17 chr21 2017957 2020813 -32886757 + L1M3e LINE L1 2007 4810 -2755 1567 188 14 10 chr21 2020813 2021105 -32886465 + AluJo SINE Alu 1 293 -19 792 57 48 0 chr21 2021113 2021237 -32886333 + GA-rich Low_complexity Low_complexity 3 132 0 9055 240 35 17 chr21 2021237 2022368 -32885202 + L1M3e LINE L1 4816 6071 -1494 429 293 11 6 chr21 2024650 2024824 -32882746 + (CA)n Simple_repeat Simple_repeat 1 175 0 269 325 0 0 chr21 2024851 2024965 -32882605 + (CA)n Simple_repeat Simple_repeat 1 114 0 1095 128 5 32 chr21 2025981 2026168 -32881402 + MER49 LTR ERV1 715 896 -27 22 56 0 0 chr21 2027759 2027795 -32879775 + AT_rich Low_complexity Low_complexity 1 36 0 38 39 0 0 chr21 2028555 2028607 -32878963 + AT_rich Low_complexity Low_complexity 1 52 0 2180 111 6 22 chr21 2028760 2029075 -32878495 - AluSp SINE Alu -1 312 3 684 296 47 18 chr21 2029339 2029677 -32877893 - L1MCa LINE L1 -3614 2812 2465 22 56 0 0 chr21 2029837 2029873 -32877697 + AT_rich Low_complexity Low_complexity 1 36 0 252 326 23 32 chr21 2029995 2030213 -32877357 - L1MCa LINE L1 -4503 1923 1708 21 0 0 0 chr21 2030884 2030905 -32876665 + AT_rich Low_complexity Low_complexity 1 21 0 977 79 0 16 chr21 2035914 2036031 -32871539 + AluY SINE Alu 1 117 -194 215 31 31 0 chr21 2036031 2036063 -32871507 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 28 79 0 0 chr21 2036242 2036305 -32871265 + AT_rich Low_complexity Low_complexity 1 63 0 355 127 63 32 chr21 2038435 2038518 -32869052 + AluJ/FRAM SINE Alu 229 302 0 2137 120 0 3 chr21 2038520 2038820 -32868750 + AluSp SINE Alu 1 299 -14 1736 166 34 7 chr21 2039132 2039427 -32868143 - AluJb SINE Alu -9 303 1 212 0 36 0 chr21 2039511 2039539 -32868031 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 286 227 80 0 chr21 2039581 2039656 -32867914 + MIR SINE MIR 112 192 -70 2225 103 3 0 chr21 2039686 2039988 -32867582 - AluSx SINE Alu -9 303 1 403 254 0 57 chr21 2040004 2040126 -32867444 - L2 LINE L2 -26 3287 3173 2071 134 10 3 chr21 2040425 2040732 -32866838 + AluJb SINE Alu 4 312 0 215 155 48 0 chr21 2042397 2042481 -32865089 + (TA)n Simple_repeat Simple_repeat 1 88 0 260 291 14 7 chr21 2042494 2042642 -32864928 + (TA)n Simple_repeat Simple_repeat 1 149 0 1209 130 16 0 chr21 2042674 2042858 -32864712 - AluSp SINE Alu -10 303 117 1232 251 49 44 chr21 2042858 2043452 -32864118 - L1M4 LINE L1 -921 5225 4629 28789 113 19 9 chr21 2043567 2047847 -32859723 + L1PA6 LINE L1 13 4337 -1809 4433 81 35 23 chr21 2047848 2048955 -32858615 + MER11A LTR ERVK 1 1266 0 7852 66 4 8 chr21 2048956 2050776 -32856794 + L1PA6 LINE L1 4334 6152 -2 2255 111 0 3 chr21 2051189 2051486 -32856084 - AluSg SINE Alu -14 296 1 558 307 18 14 chr21 2051631 2051849 -32855721 - L2 LINE L2 -8 3305 3087 1402 334 31 34 chr21 2051929 2052732 -32854838 - L2 LINE L2 -357 2957 2157 604 164 0 49 chr21 2053120 2053242 -32854328 - AluJb SINE Alu -195 117 2 5064 12 0 7 chr21 2053467 2054039 -32853531 - L1HS LINE L1 -1 6154 5587 246 62 0 0 chr21 2054039 2054071 -32853499 + (A)n Simple_repeat Simple_repeat 1 32 0 520 95 0 12 chr21 2054269 2054353 -32853217 - L1PB4 LINE L1 -2 6154 6072 592 175 38 60 chr21 2054416 2054599 -32852971 - L1MC5 LINE L1 -395 7566 7388 350 127 0 42 chr21 2054632 2054703 -32852867 + L1MC5 LINE L1 7605 7672 -289 4778 186 30 28 chr21 2055393 2056282 -32851288 + MER54A LTR ERVL 10 900 -1 25 99 0 0 chr21 2057194 2057275 -32850295 + AT_rich Low_complexity Low_complexity 1 81 0 21 0 0 0 chr21 2058571 2058592 -32848978 + AT_rich Low_complexity Low_complexity 1 21 0 249 258 30 0 chr21 2058592 2058658 -32848912 + MIR SINE MIR 64 131 -131 459 242 100 0 chr21 2059648 2059768 -32847802 + LTR16A1 LTR ERVL 168 299 -158 1711 194 148 17 chr21 2060081 2060494 -32847076 + MLT1C LTR MaLR 1 467 0 2118 100 4 0 chr21 2060745 2061044 -32846526 + AluSp SINE Alu 11 310 0 815 176 0 0 chr21 2061820 2061945 -32845625 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr21 2061945 2061973 -32845597 + AT_rich Low_complexity Low_complexity 1 28 0 2178 123 0 0 chr21 2062298 2062591 -32844979 + AluSg SINE Alu 1 293 -17 1726 184 59 6 chr21 2062705 2063042 -32844528 + MLT1A1 LTR MaLR 11 365 0 1885 117 8 8 chr21 2063421 2063686 -32843884 + AluSq SINE Alu 46 310 -3 30 0 0 0 chr21 2063975 2064005 -32843565 + AT_rich Low_complexity Low_complexity 1 30 0 439 257 9 0 chr21 2064277 2064390 -32843180 + LTR43 LTR ERV1 183 296 -306 332 338 55 0 chr21 2064646 2064791 -32842779 - LTR1B LTR ERV1 0 826 674 2011 206 127 35 chr21 2064767 2065475 -32842095 - LTR1B LTR ERV1 -98 922 1 233 202 101 67 chr21 2065710 2065799 -32841771 - MARNA DNA Mariner -480 106 15 878 227 99 6 chr21 2066644 2066816 -32840754 + MER5A DNA MER1_type 1 188 -1 467 232 0 24 chr21 2067556 2067692 -32839878 + MER5B DNA MER1_type 1 174 -4 519 122 0 0 chr21 2068290 2068364 -32839206 - MADE1 DNA Mariner -5 75 2 239 308 0 0 chr21 2068402 2068454 -32839116 + L2 LINE L2 3210 3261 -11 22 0 0 0 chr21 2068963 2068985 -32838585 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr21 2069365 2069409 -32838161 + AT_rich Low_complexity Low_complexity 1 44 0 1857 161 3 3 chr21 2070876 2071167 -32836403 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr21 2072150 2072171 -32835399 + AT_rich Low_complexity Low_complexity 1 21 0 2144 113 3 10 chr21 2072172 2072473 -32835097 + AluSc SINE Alu 1 299 -10 28 0 0 0 chr21 2072611 2072639 -32834931 + AT_rich Low_complexity Low_complexity 1 28 0 1935 157 3 7 chr21 2073095 2073388 -32834182 - AluSx SINE Alu -20 292 1 402 252 61 28 chr21 2073407 2073693 -32833877 - L1ME3A LINE L1 -180 5990 5657 551 302 17 6 chr21 2074306 2074478 -32833092 - L1MC4 LINE L1 -145 7897 7724 293 237 0 0 chr21 2075135 2075194 -32832376 - L1MC5 LINE L1 -1199 6762 6704 407 221 81 0 chr21 2075195 2075281 -32832289 - L1MC4a LINE L1 -1112 6696 6604 199 290 58 77 chr21 2075832 2076039 -32831531 - L2 LINE L2 -1857 1457 1255 658 245 19 13 chr21 2076104 2076263 -32831307 - MER5B DNA MER1_type -18 160 1 518 115 0 13 chr21 2076564 2076642 -32830928 - MADE1 DNA Mariner -3 77 1 392 295 10 90 chr21 2077139 2077339 -32830231 - MIR3 SINE MIR -5 203 20 882 179 125 76 chr21 2085417 2085641 -32821929 + MER46A DNA MER2_type 2 236 0 1858 135 13 30 chr21 2085681 2085984 -32821586 + AluSg SINE Alu 1 298 -12 914 221 39 0 chr21 2087686 2087867 -32819703 + MER5A DNA MER1_type 2 189 0 1673 204 6 3 chr21 2091538 2091857 -32815713 + L1MC2 LINE L1 6024 6343 -1 2113 286 58 43 chr21 2092030 2092133 -32815437 - L2 LINE L2 -784 2530 2430 634 264 74 0 chr21 2092133 2092296 -32815274 + MER96 DNA MER1_type 1 175 0 2113 286 58 43 chr21 2092296 2093001 -32814569 - L2 LINE L2 -884 2430 1710 21 71 0 0 chr21 2093705 2093747 -32813823 + AT_rich Low_complexity Low_complexity 1 42 0 2191 128 0 0 chr21 2095292 2095582 -32811988 - AluSg SINE Alu -20 290 1 1056 157 65 11 chr21 2095791 2095976 -32811594 + L1PA16 LINE L1 5963 6157 -9 23 0 0 0 chr21 2096529 2096552 -32811018 + AT_rich Low_complexity Low_complexity 1 23 0 236 309 161 20 chr21 2097012 2097161 -32810409 - MIR3 SINE MIR -23 185 16 184 358 58 50 chr21 2097151 2097271 -32810299 - L2 LINE L2 -1 3271 3151 21 0 0 0 chr21 2100457 2100478 -32807092 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr21 2100549 2100586 -32806984 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2314 96 0 0 chr21 2100586 2100879 -32806691 - L1PA7 LINE L1 -16 6138 5846 296 302 73 10 chr21 2101157 2101253 -32806317 + L2 LINE L2 3151 3252 -20 24 53 0 0 chr21 2101433 2101471 -32806099 + AT_rich Low_complexity Low_complexity 1 38 0 1230 223 82 62 chr21 2101746 2101784 -32805786 + MLT1C LTR MaLR 6 42 -425 1961 177 3 62 chr21 2101784 2102123 -32805447 - MLT1A1 LTR MaLR 0 365 50 2202 98 35 0 chr21 2102123 2102410 -32805160 + AluSx SINE Alu 1 297 -15 1961 177 3 62 chr21 2102410 2102454 -32805116 - MLT1A1 LTR MaLR -315 50 5 1230 223 82 62 chr21 2102454 2102868 -32804702 + MLT1C LTR MaLR 42 467 0 29 28 0 0 chr21 2103157 2103193 -32804377 + AT_rich Low_complexity Low_complexity 1 36 0 2637 146 82 11 chr21 2103976 2104343 -32803227 - L1MB2 LINE L1 -2 6169 5759 261 0 0 0 chr21 2104343 2104372 -32803198 + (TA)n Simple_repeat Simple_repeat 1 29 0 2637 146 82 11 chr21 2104372 2104482 -32803088 - L1MB2 LINE L1 -412 5759 5658 1787 189 0 3 chr21 2104650 2104952 -32802618 + AluJo SINE Alu 1 301 -11 1192 55 6 22 chr21 2104952 2104970 -32802600 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1192 55 6 22 chr21 2104970 2105152 -32802418 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1354 181 45 84 chr21 2105484 2105843 -32801727 - MLT1A1 LTR MaLR 0 365 21 2314 65 58 0 chr21 2106089 2106383 -32801187 - AluSp SINE Alu -2 311 1 2215 110 7 0 chr21 2106621 2106911 -32800659 - AluSq SINE Alu -21 292 1 424 263 28 68 chr21 2107042 2107258 -32800312 - MIR SINE MIR -53 209 1 831 216 51 31 chr21 2107984 2108239 -32799331 - LTR37B LTR ERV1 0 468 209 393 295 52 52 chr21 2108377 2108570 -32799000 - MIR SINE MIR -59 203 11 1651 93 0 0 chr21 2108803 2109018 -32798552 - L1PA6 LINE L1 0 6154 5940 620 216 33 39 chr21 2109455 2109564 -32798006 + MIR SINE MIR 14 123 -139 4640 116 32 32 chr21 2109564 2110255 -32797315 - LTR8 LTR ERV1 0 691 1 620 216 33 39 chr21 2110255 2110298 -32797272 + MIR SINE MIR 123 165 -97 1817 144 22 22 chr21 2112523 2112835 -32794735 + AluJb SINE Alu 1 312 0 211 333 25 0 chr21 2112843 2112924 -32794646 + MIR SINE MIR 160 242 -20 225 0 0 0 chr21 2112962 2112987 -32794583 + (T)n Simple_repeat Simple_repeat 1 25 0 315 221 35 62 chr21 2113127 2113240 -32794330 - MLT1J1 LTR MaLR -15 431 322 967 189 15 48 chr21 2113250 2113399 -32794171 - MLT1B LTR MaLR 0 390 248 4653 151 67 89 chr21 2113399 2114495 -32793075 - MER11C LTR ERVK 0 1071 1 967 189 15 48 chr21 2114495 2114551 -32793019 - MLT1B LTR MaLR -142 248 192 417 214 137 0 chr21 2114771 2114888 -32792682 - MLT1J2 LTR MaLR -305 145 13 233 330 58 75 chr21 2116870 2117058 -32790512 + MIR SINE MIR 25 209 -53 2070 190 11 6 chr21 2118051 2118414 -32789156 - MLT1A1 LTR MaLR 0 365 1 212 175 0 0 chr21 2120106 2120146 -32787424 + A-rich Low_complexity Low_complexity 2 41 0 184 307 45 23 chr21 2120927 2121015 -32786555 + MIR SINE MIR 58 147 -115 891 124 51 23 chr21 2121235 2121543 -32786027 + LTR7 LTR ERV1 1 450 0 1454 206 57 29 chr21 2122224 2122574 -32784996 + MER45B DNA AcHobo 445 804 -236 238 292 88 0 chr21 2122601 2122714 -32784856 + MIR SINE MIR 77 199 -63 358 232 0 0 chr21 2123861 2123930 -32783640 - L2 LINE L2 -3 3310 3242 333 352 31 0 chr21 2124034 2124162 -32783408 - MIR3 SINE MIR -42 166 35 275 71 24 0 chr21 2124560 2124602 -32782968 + (TC)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr21 2125704 2125727 -32781843 + AT_rich Low_complexity Low_complexity 1 23 0 343 299 70 5 chr21 2126140 2126334 -32781236 + MIR SINE MIR 19 228 -34 2522 51 0 0 chr21 2126871 2127163 -32780407 - AluY SINE Alu -19 292 1 1509 46 20 20 chr21 2127228 2127425 -32780145 - BC200 scRNA scRNA -3 197 1 552 95 0 0 chr21 2127833 2127917 -32779653 + (GA)n Simple_repeat Simple_repeat 1 84 0 459 0 0 0 chr21 2127917 2127968 -32779602 + (TG)n Simple_repeat Simple_repeat 1 51 0 3849 158 14 33 chr21 2129219 2129911 -32777659 - L1MA5 LINE L1 0 6300 5622 25 0 0 0 chr21 2131248 2131273 -32776297 + AT_rich Low_complexity Low_complexity 1 25 0 355 284 57 51 chr21 2132269 2132445 -32775125 + MIR3 SINE MIR 16 192 -16 720 230 36 12 chr21 2132465 2132630 -32774940 - MER45A DNA AcHobo 0 178 10 2280 108 0 3 chr21 2133771 2134076 -32773494 + AluSx SINE Alu 2 305 -7 1852 131 31 17 chr21 2134106 2134396 -32773174 - AluSq SINE Alu -19 294 1 629 247 14 0 chr21 2137185 2137331 -32770239 + MIR SINE MIR 113 260 -2 7904 71 2 2 chr21 2137545 2138514 -32769056 + LTR5 LTR ERVK 1 969 0 7595 33 1 0 chr21 2140128 2141013 -32766557 - L1PA3 LINE L1 0 6155 5270 2243 94 0 10 chr21 2143697 2143994 -32763576 - AluSg1 SINE Alu -15 294 1 324 127 0 0 chr21 2144115 2144170 -32763400 + (TG)n Simple_repeat Simple_repeat 1 55 0 1953 145 13 7 chr21 2145988 2146298 -32761272 - AluSx SINE Alu 0 312 1 26 0 0 0 chr21 2146525 2146551 -32761019 + AT_rich Low_complexity Low_complexity 1 26 0 582 279 53 0 chr21 2146551 2146738 -32760832 + MER67D LTR ERV1 225 400 -114 343 208 15 0 chr21 2147761 2147891 -32759679 + (CA)n Simple_repeat Simple_repeat 2 133 0 31 68 0 0 chr21 2150102 2150161 -32757409 + AT_rich Low_complexity Low_complexity 1 59 0 23 78 0 0 chr21 2150728 2150779 -32756791 + AT_rich Low_complexity Low_complexity 1 51 0 1357 206 11 28 chr21 2152362 2152649 -32754921 - AluJo SINE Alu -30 282 1 1393 161 62 46 chr21 2153398 2153700 -32753870 - MSTB LTR MaLR -3 423 117 985 152 168 0 chr21 2153700 2153801 -32753769 - MER30 DNA MER1_type 0 230 147 474 18 0 0 chr21 2153801 2153856 -32753714 + (TG)n Simple_repeat Simple_repeat 2 56 0 985 152 168 0 chr21 2153856 2153951 -32753619 - MER30 DNA MER1_type -83 147 1 827 130 16 0 chr21 2153951 2154073 -32753497 - MSTB LTR MaLR -302 124 1 352 321 72 45 chr21 2154098 2154363 -32753207 - L1ME LINE L1 -547 5623 5352 1464 272 35 5 chr21 2154730 2155127 -32752443 + MER70A LTR ERVL 15 423 -49 23 33 0 0 chr21 2155843 2155873 -32751697 + AT_rich Low_complexity Low_complexity 1 30 0 3162 134 24 2 chr21 2155880 2156386 -32751184 + L1PB1 LINE L1 5631 6147 -4 24 53 0 0 chr21 2158080 2158118 -32749452 + AT_rich Low_complexity Low_complexity 1 38 0 1239 200 45 41 chr21 2158118 2158408 -32749162 - AluJo SINE Alu -21 291 1 259 309 0 24 chr21 2159253 2159337 -32748233 - MIR SINE MIR -20 242 161 258 164 0 0 chr21 2159350 2159405 -32748165 + (CA)n Simple_repeat Simple_repeat 1 55 0 534 143 276 0 chr21 2159453 2159551 -32748019 + FLAM_C SINE Alu 2 126 -17 670 298 79 30 chr21 2159795 2160164 -32747406 - MLT1K LTR MaLR -2 586 200 915 207 90 9 chr21 2160745 2161134 -32746436 - LTR46 LTR ERV1 0 460 1 200 310 113 35 chr21 2161301 2161443 -32746127 - L2 LINE L2 -166 3147 2995 459 252 38 6 chr21 2162333 2162492 -32745078 + LTR33 LTR ERVL 295 458 -63 252 346 102 0 chr21 2162828 2162955 -32744615 + MIR SINE MIR 15 154 -108 389 330 0 0 chr21 2163188 2163306 -32744264 + MIR SINE MIR 23 140 -122 1026 254 26 6 chr21 2163429 2163740 -32743830 - LTR16C LTR ERVL -29 462 146 250 291 103 22 chr21 2164087 2164256 -32743314 - MIR SINE MIR -55 207 26 425 281 29 7 chr21 2169229 2169368 -32738202 - MSTA LTR MaLR -154 274 133 470 237 17 23 chr21 2169418 2169648 -32737922 + THE1-int LTR MaLR 907 1174 -406 230 250 18 0 chr21 2169650 2169706 -32737864 - MST-int LTR MaLR -616 1035 979 280 208 89 40 chr21 2169771 2169872 -32737698 - MSTA LTR MaLR -322 106 1 1049 208 96 20 chr21 2169872 2170165 -32737405 - MSTA-int LTR MaLR 0 1651 1337 324 203 54 14 chr21 2170190 2170264 -32737306 - MSTA LTR MaLR -257 171 95 397 208 21 10 chr21 2170341 2170437 -32737133 - MSTA LTR MaLR -331 97 1 5700 225 47 44 chr21 2170437 2172057 -32735513 - MSTA-int LTR MaLR 0 1651 28 389 204 31 10 chr21 2172054 2172152 -32735418 + THE1-int LTR MaLR 465 564 -1016 791 238 82 12 chr21 2172235 2172491 -32735079 - MSTA LTR MaLR -60 368 95 617 195 28 22 chr21 2172506 2172750 -32734820 + THE1-int LTR MaLR 907 1191 -389 256 214 18 0 chr21 2172738 2172794 -32734776 - THE1-int LTR MaLR -613 967 911 469 179 21 0 chr21 2172888 2172983 -32734587 - MSTA LTR MaLR -331 97 1 1387 202 3 40 chr21 2172983 2173330 -32734240 - MSTA-int LTR MaLR 0 1651 1318 294 226 32 0 chr21 2173337 2173399 -32734171 - MSTA LTR MaLR -269 159 96 391 243 19 0 chr21 2173470 2173573 -32733997 - MSTA LTR MaLR -323 105 1 5378 230 52 47 chr21 2173573 2175184 -32732386 - MSTB-int LTR MaLR 0 1651 34 297 275 37 9 chr21 2175188 2175297 -32732273 + THE1-int LTR MaLR 466 577 -1003 780 249 70 16 chr21 2175339 2175596 -32731974 - MSTB LTR MaLR -52 374 104 544 236 180 56 chr21 2175626 2175876 -32731694 + MST-int LTR MaLR 976 1256 -395 248 222 19 0 chr21 2175866 2175920 -32731650 - MST-int LTR MaLR -618 1033 979 3785 111 27 4 chr21 2175991 2176541 -32731029 + LTR6A LTR ERV1 1 563 -1 228 211 126 21 chr21 2176574 2176669 -32730901 - MSTB LTR MaLR -250 105 1 1187 211 39 45 chr21 2176669 2177005 -32730565 - MSTB-int LTR MaLR 0 1651 1318 353 235 10 0 chr21 2177154 2177252 -32730318 - MSTA LTR MaLR -329 99 1 515 198 9 0 chr21 2177252 2177368 -32730202 - MSTA-int LTR MaLR 0 1651 1535 3642 241 36 28 chr21 2177364 2178678 -32728892 - MSTA-int LTR MaLR -262 1389 26 438 230 166 7 chr21 2178674 2178813 -32728757 + MST-int LTR MaLR 507 667 -984 968 231 52 8 chr21 2178841 2179109 -32728461 - MSTA LTR MaLR -52 376 97 424 235 20 0 chr21 2179131 2179233 -32728337 + MST-int LTR MaLR 976 1079 -572 345 272 48 34 chr21 2179226 2179373 -32728197 + THE1-int LTR MaLR 1043 1191 -389 280 196 18 0 chr21 2179361 2179417 -32728153 - THE1-int LTR MaLR -613 967 911 274 197 33 0 chr21 2179533 2179594 -32727976 - MSTA LTR MaLR -363 65 3 1172 213 40 43 chr21 2179596 2179924 -32727646 - MSTA-int LTR MaLR 0 1651 1325 270 245 113 9 chr21 2179924 2180030 -32727540 - MSTA LTR MaLR -252 176 60 436 227 21 0 chr21 2180079 2180176 -32727394 - MSTA LTR MaLR -329 99 1 3426 253 59 35 chr21 2180176 2181303 -32726267 - MSTA-int LTR MaLR 0 1580 427 742 230 5 0 chr21 2181338 2181529 -32726041 - MSTA-int LTR MaLR -1421 230 39 539 173 173 8 chr21 2181538 2181671 -32725899 + MST-int LTR MaLR 507 661 -990 846 239 59 43 chr21 2181697 2182002 -32725568 - MSTA LTR MaLR -43 385 76 499 249 219 26 chr21 2182007 2182240 -32725330 + MST-int LTR MaLR 976 1253 -398 268 193 18 0 chr21 2182231 2182288 -32725282 - MST-int LTR MaLR -616 1035 978 415 194 11 0 chr21 2182388 2182481 -32725089 - MSTA LTR MaLR -334 94 1 1179 208 16 38 chr21 2182481 2182799 -32724771 - MSTA-int LTR MaLR 0 1651 1341 251 213 41 107 chr21 2182805 2182927 -32724643 - MSTA LTR MaLR -257 171 58 238 213 96 43 chr21 2182952 2183046 -32724524 - MSTB2 LTR MaLR -345 112 14 515 189 27 0 chr21 2183048 2183159 -32724411 - MSTB2-int LTR MaLR 0 1651 1538 273 186 93 41 chr21 2183282 2183379 -32724191 - MSTB2 LTR MaLR -342 115 14 5599 240 51 21 chr21 2183381 2184959 -32722611 - MSTA-int LTR MaLR 0 1651 28 269 256 168 7 chr21 2184953 2185090 -32722480 + MST-int LTR MaLR 503 661 -990 897 245 57 11 chr21 2185126 2185391 -32722179 - MSTA LTR MaLR -54 374 98 324 313 10 0 chr21 2185419 2185518 -32722052 + MST-int LTR MaLR 976 1075 -576 371 232 42 35 chr21 2185516 2185658 -32721912 + THE1-int LTR MaLR 1045 1187 -393 512 146 21 10 chr21 2185791 2185887 -32721683 - MSTA LTR MaLR -331 97 1 1399 201 3 40 chr21 2185887 2186235 -32721335 - MSTA-int LTR MaLR 0 1651 1317 223 235 0 29 chr21 2186297 2186365 -32721205 + C-rich Low_complexity Low_complexity 5 70 0 390 232 10 0 chr21 2186381 2186480 -32721090 - MSTA LTR MaLR -328 100 1 364 158 26 0 chr21 2186480 2186556 -32721014 - MSTA-int LTR MaLR 0 1651 1574 306 177 0 32 chr21 2186558 2186620 -32720950 + MSTA LTR MaLR 317 376 -52 5213 230 50 36 chr21 2186693 2188228 -32719342 - MSTA-int LTR MaLR -68 1583 28 415 245 32 32 chr21 2188223 2188378 -32719192 + THE1-int LTR MaLR 463 617 -963 964 243 56 4 chr21 2188395 2188662 -32718908 - MSTA LTR MaLR -52 376 96 296 256 12 0 chr21 2188687 2188769 -32718801 + MST-int LTR MaLR 976 1058 -593 471 242 40 34 chr21 2188778 2188927 -32718643 + THE1-int LTR MaLR 1039 1188 -392 241 193 35 18 chr21 2188917 2188974 -32718596 - MSTA-int LTR MaLR -612 968 911 410 208 10 0 chr21 2189070 2189166 -32718404 - MSTA LTR MaLR -331 97 1 1283 230 3 38 chr21 2189168 2189512 -32718058 - MST-int LTR MaLR -2 1649 1318 258 214 34 34 chr21 2189576 2189665 -32717905 + C-rich Low_complexity Low_complexity 4 92 0 5466 231 49 46 chr21 2189786 2191404 -32716166 - MSTA-int LTR MaLR 0 1651 28 323 224 147 56 chr21 2191401 2191544 -32716026 + MST-int LTR MaLR 506 661 -990 855 234 78 8 chr21 2191586 2191842 -32715728 - MSTA LTR MaLR -60 368 95 481 152 22 0 chr21 2191858 2191950 -32715620 + MST-int LTR MaLR 976 1069 -582 499 208 60 34 chr21 2191948 2192097 -32715473 + THE1-int LTR MaLR 1039 1191 -389 231 214 18 0 chr21 2192085 2192141 -32715429 - MST-int LTR MaLR -616 1035 979 369 202 32 0 chr21 2192235 2192329 -32715241 - MSTA LTR MaLR -331 97 1 1256 213 9 46 chr21 2192329 2192676 -32714894 - MSTA-int LTR MaLR 0 1651 1318 281 229 33 0 chr21 2192683 2192744 -32714826 - MSTA LTR MaLR -269 159 97 417 224 20 0 chr21 2192822 2192920 -32714650 - MSTA LTR MaLR -328 100 1 5501 227 54 41 chr21 2192920 2194518 -32713052 - MSTA-int LTR MaLR 0 1651 34 845 214 58 36 chr21 2194672 2194948 -32712622 - MSTA LTR MaLR -52 376 95 433 223 11 0 chr21 2194961 2195055 -32712515 + MST-int LTR MaLR 976 1070 -581 488 186 36 36 chr21 2195052 2195192 -32712378 + THE1-int LTR MaLR 1039 1178 -402 3815 106 27 4 chr21 2195317 2195867 -32711703 + LTR6A LTR ERV1 1 563 -1 391 204 21 0 chr21 2195899 2195992 -32711578 - MSTA LTR MaLR -333 95 1 1060 241 40 34 chr21 2195992 2196315 -32711255 - MSTA-int LTR MaLR 0 1651 1327 285 196 88 88 chr21 2196317 2196419 -32711151 - MSTA LTR MaLR -252 176 75 373 222 9 37 chr21 2196463 2196571 -32710999 - MSTA LTR MaLR -323 105 1 551 181 9 0 chr21 2196571 2196687 -32710883 - MSTA-int LTR MaLR 0 1651 1535 3532 241 37 30 chr21 2196683 2197992 -32709578 - MSTA-int LTR MaLR -262 1389 32 463 226 161 7 chr21 2197997 2198134 -32709436 + MST-int LTR MaLR 510 667 -984 935 235 67 11 chr21 2198162 2198447 -32709123 - MSTA LTR MaLR -52 376 76 451 232 33 22 chr21 2198451 2198694 -32708876 + THE1-int LTR MaLR 907 1191 -389 260 214 18 0 chr21 2198682 2198738 -32708832 - THE1-int LTR MaLR -613 967 911 274 197 33 0 chr21 2198854 2198915 -32708655 - MSTA LTR MaLR -363 65 3 1181 213 40 43 chr21 2198917 2199245 -32708325 - MSTA-int LTR MaLR 0 1651 1325 270 245 113 9 chr21 2199245 2199351 -32708219 - MSTA LTR MaLR -252 176 60 436 227 21 0 chr21 2199400 2199497 -32708073 - MSTA LTR MaLR -329 99 1 4756 246 45 43 chr21 2199497 2201035 -32706535 - MSTA-int LTR MaLR 0 1580 40 473 208 156 10 chr21 2201044 2201195 -32706375 + MST-int LTR MaLR 466 661 -963 794 250 52 45 chr21 2201203 2201491 -32706079 - MSTA LTR MaLR -43 385 96 646 229 179 21 chr21 2201514 2201754 -32705816 + MST-int LTR MaLR 976 1253 -398 249 172 17 35 chr21 2201745 2201803 -32705767 - MST-int LTR MaLR -616 1035 979 391 204 11 0 chr21 2201903 2201996 -32705574 - MSTA LTR MaLR -334 94 1 1072 223 22 47 chr21 2201996 2202315 -32705255 - MSTA-int LTR MaLR 0 1651 1341 303 219 49 85 chr21 2202321 2202403 -32705167 - MSTA LTR MaLR -257 171 93 616 159 9 0 chr21 2202571 2202684 -32704886 - MSTA-int LTR MaLR 0 1651 1538 361 250 7 34 chr21 2202696 2202844 -32704726 + C-rich Low_complexity Low_complexity 4 147 0 287 196 93 41 chr21 2202845 2202942 -32704628 - MSTB2 LTR MaLR -342 115 14 6185 229 52 22 chr21 2202944 2204521 -32703049 - MSTB-int LTR MaLR 0 1651 28 228 234 0 16 chr21 2204515 2204579 -32702991 + MST-int LTR MaLR 503 565 -1086 933 239 69 38 chr21 2204689 2204978 -32702592 - MSTB LTR MaLR -54 372 75 335 284 11 0 chr21 2204983 2205071 -32702499 + MST-int LTR MaLR 976 1064 -587 478 211 42 35 chr21 2205080 2205222 -32702348 + THE1-int LTR MaLR 1045 1187 -393 475 168 21 11 chr21 2205356 2205451 -32702119 - MSTB LTR MaLR -332 96 1 1351 226 3 41 chr21 2205451 2205792 -32701778 - MSTB-int LTR MaLR 0 1651 1324 331 234 149 0 chr21 2205792 2205899 -32701671 - MSTA LTR MaLR -248 180 58 376 263 10 0 chr21 2205944 2206043 -32701527 - MSTA LTR MaLR -328 100 1 406 145 26 0 chr21 2206043 2206119 -32701451 - MSTA-int LTR MaLR 0 1651 1574 242 143 0 0 chr21 2206139 2206174 -32701396 + MSTB2 LTR MaLR 363 397 -60 5669 220 52 37 chr21 2206254 2207786 -32699784 - MSTA-int LTR MaLR -68 1583 28 514 240 32 26 chr21 2207781 2207935 -32699635 + THE1-int LTR MaLR 463 617 -963 1064 242 55 10 chr21 2207952 2208241 -32699329 - MSTA LTR MaLR -52 376 75 546 258 179 21 chr21 2208244 2208484 -32699086 + MST-int LTR MaLR 976 1253 -398 226 193 35 18 chr21 2208474 2208531 -32699039 - THE1-int LTR MaLR -612 968 911 466 208 10 0 chr21 2208627 2208723 -32698847 - MSTA LTR MaLR -331 97 1 1477 206 9 44 chr21 2208725 2209069 -32698501 - MSTA-int LTR MaLR -2 1649 1318 347 231 0 0 chr21 2209076 2209141 -32698429 - MSTA LTR MaLR -269 159 95 210 287 32 0 chr21 2209142 2209236 -32698334 + (CACCC)n Simple_repeat Simple_repeat 3 99 0 5888 222 52 45 chr21 2209344 2210955 -32696615 - MSTA-int LTR MaLR -1 1650 28 385 194 41 20 chr21 2210952 2211050 -32696520 + THE1-int LTR MaLR 465 564 -1016 852 235 82 12 chr21 2211137 2211392 -32696178 - MSTA LTR MaLR -61 367 95 654 183 28 22 chr21 2211407 2211651 -32695919 + THE1-int LTR MaLR 907 1191 -389 260 214 18 0 chr21 2211639 2211695 -32695875 - THE1-int LTR MaLR -613 967 911 488 189 21 0 chr21 2211789 2211884 -32695686 - MSTA LTR MaLR -331 97 1 1408 213 3 40 chr21 2211884 2212231 -32695339 - MSTA-int LTR MaLR 0 1651 1318 277 258 32 0 chr21 2212238 2212300 -32695270 - MSTA LTR MaLR -269 159 96 393 219 42 21 chr21 2212377 2212473 -32695097 - MSTA LTR MaLR -328 100 3 5887 233 53 33 chr21 2212475 2214061 -32693509 - MSTA-int LTR MaLR 0 1651 34 299 239 64 37 chr21 2214065 2214174 -32693396 + THE1-int LTR MaLR 466 577 -1003 916 206 76 54 chr21 2214216 2214492 -32693078 - MSTA LTR MaLR -52 376 95 497 217 26 23 chr21 2214504 2214736 -32692834 + THE1-int LTR MaLR 907 1178 -402 3990 104 27 4 chr21 2214859 2215409 -32692161 + LTR6A LTR ERV1 1 563 -1 444 200 21 0 chr21 2215440 2215535 -32692035 - MSTA LTR MaLR -331 97 1 1135 211 53 43 chr21 2215535 2215857 -32691713 - MSTA-int LTR MaLR 0 1651 1327 310 262 103 9 chr21 2215859 2215966 -32691604 - MSTA LTR MaLR -252 176 60 435 224 10 0 chr21 2216015 2216113 -32691457 - MSTA LTR MaLR -329 99 1 577 190 9 0 chr21 2216113 2216229 -32691341 - MSTA-int LTR MaLR 0 1651 1535 4380 218 45 65 chr21 2216225 2217547 -32690023 - MSTA-int LTR MaLR -259 1321 27 514 240 32 26 chr21 2217540 2217694 -32689876 + THE1-int LTR MaLR 463 617 -963 1014 242 57 4 chr21 2217714 2217978 -32689592 - MSTA LTR MaLR -55 373 96 536 254 179 21 chr21 2218003 2218243 -32689327 + MST-int LTR MaLR 976 1253 -398 267 137 39 20 chr21 2218233 2218284 -32689286 - THE1-int LTR MaLR -612 968 917 448 211 11 0 chr21 2218387 2218482 -32689088 - MSTA LTR MaLR -332 96 1 1466 212 6 43 chr21 2218484 2218829 -32688741 - MSTA-int LTR MaLR -2 1649 1318 302 236 18 73 chr21 2218836 2218946 -32688624 - MSTA LTR MaLR -269 159 56 5450 237 60 24 chr21 2219104 2220668 -32686902 - MSTA-int LTR MaLR 0 1651 32 513 212 167 0 chr21 2220671 2220803 -32686767 + MST-int LTR MaLR 508 661 -990 1223 211 63 7 chr21 2220837 2221121 -32686449 - MSTA LTR MaLR -52 376 77 686 232 187 21 chr21 2221127 2221368 -32686202 + MST-int LTR MaLR 976 1256 -395 295 179 18 0 chr21 2221356 2221412 -32686158 - MSTA-int LTR MaLR -613 967 911 317 250 0 10 chr21 2221524 2221628 -32685942 - MSTA-int LTR MaLR -1521 130 28 434 296 33 0 chr21 2221625 2221777 -32685793 + THE1-int LTR MaLR 465 621 -959 987 227 45 54 chr21 2221792 2222174 -32685396 - MSTA LTR MaLR -52 376 14 1374 163 12 12 chr21 2222176 2222427 -32685143 - MSTA-int LTR MaLR 0 1651 1401 1333 185 0 0 chr21 2222424 2222662 -32684908 - MSTA-int LTR MaLR -1401 250 13 1330 246 95 3 chr21 2222691 2223028 -32684542 - MSTA LTR MaLR -60 368 1 2106 87 67 45 chr21 2225113 2225517 -32682053 + SN5 Satellite centromeric 1 413 -42 189 237 0 0 chr21 2225793 2225852 -32681718 + (TG)n Simple_repeat Simple_repeat 2 60 0 881 204 28 6 chr21 2227330 2227511 -32680059 + L1MC4 LINE L1 6819 7003 -1039 896 187 43 30 chr21 2227553 2227788 -32679782 + L1MC4 LINE L1 7137 7374 -668 266 271 200 35 chr21 2228587 2228757 -32678813 - L2 LINE L2 -166 3106 2909 21 0 0 0 chr21 2229352 2229373 -32678197 + AT_rich Low_complexity Low_complexity 1 21 0 2089 133 7 0 chr21 2229735 2230029 -32677541 + AluSc SINE Alu 1 296 -13 4505 172 43 19 chr21 2230189 2230852 -32676718 - L1PA16 LINE L1 0 6166 5467 207 0 0 0 chr21 2230852 2230875 -32676695 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4505 172 43 19 chr21 2230875 2231327 -32676243 - L1PA16 LINE L1 -699 5467 5027 1999 147 17 0 chr21 2231364 2231664 -32675906 - AluSx SINE Alu -7 305 1 1955 117 3 45 chr21 2231842 2232151 -32675419 - AluSg1 SINE Alu -10 299 4 2066 135 3 0 chr21 2232182 2232479 -32675091 + AluSg SINE Alu 1 298 -12 386 267 0 0 chr21 2233429 2233530 -32674040 + L1MA9 LINE L1 6163 6263 -49 1601 211 13 30 chr21 2235953 2236251 -32671319 + AluJo SINE Alu 3 295 -7 2980 215 32 11 chr21 2236364 2237480 -32670090 + L1MA5 LINE L1 4808 5946 -354 961 256 31 8 chr21 2237481 2237739 -32669831 + AluJo SINE Alu 1 264 -48 1364 178 65 0 chr21 2237806 2238082 -32669488 + L1MA5 LINE L1 6001 6294 -6 723 312 85 17 chr21 2238119 2238498 -32669072 + MLT1G1 LTR MaLR 79 561 -34 2150 223 46 12 chr21 2239843 2240793 -32666777 + L1MB8 LINE L1 4771 5757 -421 658 122 0 19 chr21 2240800 2240907 -32666663 + L1MB8 LINE L1 5732 5836 -342 2116 150 75 5 chr21 2240916 2241327 -32666243 + MER61C LTR ERV1 11 434 0 375 157 14 0 chr21 2241327 2241397 -32666173 + L1MB8 LINE L1 5833 5903 -275 989 212 35 17 chr21 2241419 2241650 -32665920 + L1MB8 LINE L1 5939 6173 -5 1023 204 56 39 chr21 2241870 2242234 -32665336 + MER4E LTR ERV1 1 375 -391 3395 119 44 0 chr21 2242330 2242810 -32664760 + L1PA10 LINE L1 5655 6155 -13 1936 147 3 58 chr21 2243196 2243522 -32664048 - AluSq SINE Alu -5 308 1 22 35 0 0 chr21 2244039 2244068 -32663502 + AT_rich Low_complexity Low_complexity 1 29 0 284 229 0 29 chr21 2244073 2244143 -32663427 - MER34B LTR ERV1 -94 471 404 1599 139 86 4 chr21 2244403 2244707 -32662863 + AluSg SINE Alu 1 326 0 193 279 0 44 chr21 2245548 2245616 -32661954 - L3 LINE CR1 -203 1374 1310 2119 120 0 3 chr21 2245956 2246264 -32661306 - AluSg SINE Alu 0 307 1 2257 129 3 0 chr21 2246613 2246924 -32660646 - AluSx SINE Alu 0 312 1 1361 211 46 4 chr21 2247353 2247512 -32660058 - AluJb SINE Alu -20 292 114 225 0 0 0 chr21 2247512 2247537 -32660033 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1361 211 46 4 chr21 2247537 2247657 -32659913 - AluJb SINE Alu -198 114 1 1936 217 81 26 chr21 2248759 2249252 -32658318 + L1MB8 LINE L1 5653 6172 -6 262 269 103 0 chr21 2250316 2250394 -32657176 + L2 LINE L2 2722 2807 -507 1014 233 40 18 chr21 2251108 2251383 -32656187 - L1MB7 LINE L1 0 6184 5904 5594 106 49 68 chr21 2251918 2254665 -32652905 - SVA Other Other -518 1381 343 23 0 0 0 chr21 2256733 2256756 -32650814 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 2257685 2257706 -32649864 + AT_rich Low_complexity Low_complexity 1 21 0 276 253 104 41 chr21 2257796 2258021 -32649549 - L1P4 LINE L1 -524 5642 5404 2028 142 0 13 chr21 2258140 2258457 -32649113 + AluSq SINE Alu 1 313 0 34 42 0 0 chr21 2258645 2258693 -32648877 + AT_rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr21 2258769 2258807 -32648763 + AT_rich Low_complexity Low_complexity 1 38 0 634 47 23 0 chr21 2260467 2260553 -32647017 - L1PA5 LINE L1 -1 6153 6066 26 30 0 0 chr21 2262550 2262583 -32644987 + AT_rich Low_complexity Low_complexity 1 33 0 26 64 0 0 chr21 2262837 2262884 -32644686 + AT_rich Low_complexity Low_complexity 1 47 0 1480 238 30 0 chr21 2263273 2263571 -32643999 + AluJo SINE Alu 1 307 -5 211 200 0 0 chr21 2263792 2263832 -32643738 - L2 LINE L2 -12 3301 3262 1947 159 7 0 chr21 2264114 2264416 -32643154 - AluSx SINE Alu -8 304 1 1939 154 11 0 chr21 2264879 2265165 -32642405 - AluSp SINE Alu -24 289 1 22 56 0 0 chr21 2266785 2266821 -32640749 + AT_rich Low_complexity Low_complexity 1 36 0 1882 165 0 0 chr21 2266933 2267236 -32640334 + AluSx SINE Alu 6 308 -4 244 196 0 0 chr21 2268232 2268278 -32639292 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 181 208 0 chr21 2270465 2270537 -32637033 + MER5A DNA MER1_type 20 106 -83 2336 89 0 0 chr21 2271400 2271693 -32635877 - AluY SINE Alu -18 293 1 1261 250 0 24 chr21 2271889 2272185 -32635385 - AluJo SINE Alu -23 289 1 1569 213 0 7 chr21 2272219 2272501 -32635069 + AluJb SINE Alu 3 282 -30 6367 47 0 0 chr21 2272887 2273658 -32633912 + L1PA5 LINE L1 5376 6146 -8 21 89 0 0 chr21 2273892 2273948 -32633622 + AT_rich Low_complexity Low_complexity 1 56 0 1244 210 30 54 chr21 2274044 2274339 -32633231 + AluJb SINE Alu 13 300 -12 1885 123 6 85 chr21 2274513 2274831 -32632739 - AluSx SINE Alu -19 293 1 649 206 0 0 chr21 2275084 2275191 -32632379 - FLAM_A SINE Alu -35 107 1 22 35 0 0 chr21 2276490 2276519 -32631051 + AT_rich Low_complexity Low_complexity 1 29 0 563 240 0 24 chr21 2278575 2278700 -32628870 + FLAM_C SINE Alu 7 128 -15 647 166 45 19 chr21 2279146 2279303 -32628267 - MER21A LTR ERV1 -24 907 747 812 127 45 0 chr21 2279304 2279438 -32628132 + Tigger7 DNA MER2_type 2348 2487 0 2360 153 2 40 chr21 2280454 2280899 -32626671 + L1MC1 LINE L1 5906 6333 0 1883 164 17 0 chr21 2280909 2281202 -32626368 + AluSq SINE Alu 1 298 -15 28 0 0 0 chr21 2281239 2281267 -32626303 + AT_rich Low_complexity Low_complexity 1 28 0 2157 125 6 6 chr21 2281267 2281578 -32625992 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr21 2281701 2281728 -32625842 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr21 2282059 2282096 -32625474 + AT_rich Low_complexity Low_complexity 1 37 0 2588 192 46 7 chr21 2282129 2282670 -32624900 + MER68 LTR ERV1 1 562 0 1299 161 0 109 chr21 2283036 2283340 -32624230 + AluJb SINE Alu 1 271 -41 863 187 0 0 chr21 2283421 2283560 -32624010 + FAM SINE Alu 22 160 -25 188 119 0 48 chr21 2283880 2283922 -32623648 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1896 193 35 14 chr21 2284175 2284600 -32622970 + Tigger2a DNA MER2_type 1 434 0 21 71 0 0 chr21 2284600 2284642 -32622928 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 2284869 2284891 -32622679 + AT_rich Low_complexity Low_complexity 1 22 0 546 217 0 0 chr21 2286155 2286261 -32621309 - U6 snRNA snRNA -1 106 1 21 0 0 0 chr21 2286377 2286398 -32621172 + AT_rich Low_complexity Low_complexity 1 21 0 614 186 0 0 chr21 2287224 2287337 -32620233 + FLAM_C SINE Alu 31 143 0 2135 129 0 0 chr21 2288261 2288548 -32619022 + AluSc SINE Alu 1 287 -22 21 0 0 0 chr21 2290019 2290040 -32617530 + AT_rich Low_complexity Low_complexity 1 21 0 371 270 24 16 chr21 2290418 2290544 -32617026 - MER102b DNA MER1_type -1 340 214 342 0 0 0 chr21 2291543 2291581 -32615989 + (TG)n Simple_repeat Simple_repeat 1 38 0 483 288 121 25 chr21 2293503 2293701 -32613869 + MIR SINE MIR 20 236 -26 1656 186 3 7 chr21 2293709 2294004 -32613566 - AluJo SINE Alu -18 294 1 33 56 0 0 chr21 2294834 2294888 -32612682 + AT_rich Low_complexity Low_complexity 1 54 0 256 192 48 32 chr21 2295812 2295937 -32611633 + (TA)n Simple_repeat Simple_repeat 1 127 0 2128 132 3 0 chr21 2295949 2296260 -32611310 + AluSx SINE Alu 1 312 0 24 32 0 0 chr21 2296306 2296337 -32611233 + AT_rich Low_complexity Low_complexity 1 31 0 230 274 63 11 chr21 2298215 2298390 -32609180 - HSREP522 Satellite telomeric -291 231 48 334 250 19 37 chr21 2299024 2299240 -32608330 - HSREP522 Satellite telomeric -190 332 121 844 151 23 10 chr21 2299739 2300010 -32607560 + HSREP522 Satellite telomeric 1 274 -4 3880 220 62 10 chr21 2300010 2301287 -32606283 - L1 LINE L1 -2021 4125 2785 308 279 84 53 chr21 2301454 2301716 -32605854 + HSREP522 Satellite telomeric 40 309 -213 255 174 0 58 chr21 2302604 2302759 -32604811 + (CCCTG)n Simple_repeat Simple_repeat 1 146 0 190 167 8 56 chr21 2302915 2303041 -32604529 + (CCCTG)n Simple_repeat Simple_repeat 1 120 0 293 161 10 99 chr21 2303048 2303240 -32604330 + (GCCTG)n Simple_repeat Simple_repeat 5 179 0 319 164 5 97 chr21 2303106 2303301 -32604269 + (CCCTG)n Simple_repeat Simple_repeat 1 177 0 345 154 0 109 chr21 2303399 2303600 -32603970 + (CCCTG)n Simple_repeat Simple_repeat 1 179 0 231 158 0 59 chr21 2303633 2303734 -32603836 + (CCCTG)n Simple_repeat Simple_repeat 1 95 0 326 161 0 118 chr21 2303948 2304243 -32603327 + (CCCTG)n Simple_repeat Simple_repeat 1 260 0 331 159 5 101 chr21 2304291 2304480 -32603090 + (CCCTG)n Simple_repeat Simple_repeat 4 174 0 378 158 0 102 chr21 2304523 2304719 -32602851 + (CCCTG)n Simple_repeat Simple_repeat 1 176 0 311 119 0 89 chr21 2304751 2304919 -32602651 + (CCCTG)n Simple_repeat Simple_repeat 5 157 0 369 180 0 90 chr21 2304960 2305138 -32602432 + (CCCTG)n Simple_repeat Simple_repeat 4 165 0 227 121 7 94 chr21 2305193 2305342 -32602228 + (CCCTG)n Simple_repeat Simple_repeat 1 136 0 314 139 0 57 chr21 2305366 2305488 -32602082 + (CCCTG)n Simple_repeat Simple_repeat 2 116 0 962 144 47 56 chr21 2305519 2305734 -32601836 - L1MB7 LINE L1 -87 6097 5885 2189 121 3 3 chr21 2305818 2306115 -32601455 - AluSp SINE Alu -16 297 1 1232 141 0 5 chr21 2306148 2306333 -32601237 + AluSg/x SINE Alu 127 310 0 397 354 49 21 chr21 2306494 2306923 -32600647 - L1MC4a LINE L1 -1902 5906 5466 867 135 26 47 chr21 2306939 2307132 -32600438 + L1MA9 LINE L1 6124 6312 0 1562 245 75 9 chr21 2307367 2307832 -32599738 + L1ME1 LINE L1 5662 6157 -9 39778 68 9 4 chr21 2307851 2313264 -32594306 - L1P2 LINE L1 -711 5443 13 2428 133 65 99 chr21 2313542 2314159 -32593411 - L1MB3 LINE L1 -1 6182 5587 22 0 0 0 chr21 2314236 2314258 -32593312 + AT_rich Low_complexity Low_complexity 1 22 0 2277 122 0 0 chr21 2314402 2314706 -32592864 - AluSg SINE Alu -6 304 1 8008 226 55 23 chr21 2314843 2316773 -32590797 - L1MC4a LINE L1 -847 5299 3267 1953 154 10 3 chr21 2316773 2317066 -32590504 - AluSx SINE Alu -17 295 1 8008 226 55 23 chr21 2317066 2317696 -32589874 - L1MC4a LINE L1 -2879 3267 2658 2018 131 7 13 chr21 2318026 2318331 -32589239 + AluSx SINE Alu 6 308 -4 23 78 0 0 chr21 2320144 2320195 -32587375 + AT_rich Low_complexity Low_complexity 1 51 0 2156 107 24 3 chr21 2320389 2320680 -32586890 + AluSq SINE Alu 1 297 -16 2052 133 3 23 chr21 2321020 2321329 -32586241 + AluSg1 SINE Alu 1 303 -6 2342 74 0 0 chr21 2321342 2321656 -32585914 + AluY SINE Alu 2 315 0 1372 154 67 29 chr21 2323571 2323883 -32583687 - MER33 DNA MER1_type 0 324 1 1159 204 14 14 chr21 2323892 2324112 -32583458 - MER58A DNA MER1_type -1 223 4 1799 115 0 0 chr21 2324526 2324760 -32582810 + AluSq SINE Alu 1 234 -79 251 316 73 15 chr21 2325481 2325617 -32581953 + MIR SINE MIR 22 165 -97 267 114 0 0 chr21 2328396 2328440 -32579130 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 2353 101 3 0 chr21 2334071 2334367 -32573203 + AluSg SINE Alu 1 297 -13 2004 132 3 10 chr21 2334378 2334682 -32572888 + AluSx SINE Alu 1 302 -10 1097 82 0 0 chr21 2335288 2335422 -32572148 - AluSq/x SINE Alu -179 134 1 2133 135 6 25 chr21 2335424 2335742 -32571828 - AluSx SINE Alu 0 312 1 249 290 16 0 chr21 2335948 2336010 -32571560 + L2 LINE L2 3251 3313 0 1579 212 10 7 chr21 2336289 2336596 -32570974 - AluJo SINE Alu -4 308 1 22 0 0 0 chr21 2336596 2336618 -32570952 + AT_rich Low_complexity Low_complexity 1 22 0 2077 104 76 0 chr21 2338489 2338777 -32568793 - AluSg SINE Alu 0 310 1 29 70 0 0 chr21 2339190 2339247 -32568323 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr21 2341762 2341790 -32565780 + AT_rich Low_complexity Low_complexity 1 28 0 191 242 136 30 chr21 2342010 2342076 -32565494 + L2 LINE L2 3191 3263 -9 544 283 31 25 chr21 2342252 2342411 -32565159 - MER5B DNA MER1_type -18 160 1 409 263 0 8 chr21 2343394 2343512 -32564058 + MLT1H LTR MaLR 359 475 -74 1954 131 58 0 chr21 2344318 2344609 -32562961 - AluSg SINE Alu 0 310 3 1406 252 25 13 chr21 2345602 2345998 -32561572 - MER93a LTR ERV1 0 402 2 542 228 50 78 chr21 2347106 2347325 -32560245 - MER92B LTR ERV1 -120 516 304 189 0 0 0 chr21 2347334 2347355 -32560215 + (T)n Simple_repeat Simple_repeat 1 21 0 993 236 69 18 chr21 2347593 2347945 -32559625 + MER21B LTR ERV1 417 856 -75 1525 217 80 32 chr21 2348657 2348825 -32558745 + MER67C LTR ERV1 1 160 -550 402 21 0 0 chr21 2348825 2348872 -32558698 + (TG)n Simple_repeat Simple_repeat 2 48 0 1525 217 80 32 chr21 2348872 2349253 -32558317 + MER67C LTR ERV1 160 657 -53 2374 54 0 19 chr21 2349253 2349569 -32558001 - AluY SINE Alu -1 310 1 1525 217 80 32 chr21 2349569 2349621 -32557949 + MER67C LTR ERV1 657 705 -5 2155 107 0 3 chr21 2351589 2351888 -32555682 + AluSq SINE Alu 1 298 -15 254 250 15 98 chr21 2352119 2352251 -32555319 + MIR SINE MIR 133 253 -9 317 315 0 0 chr21 2352694 2352786 -32554784 + MER5A DNA MER1_type 19 110 -79 669 344 100 34 chr21 2354426 2354978 -32552592 - L3 LINE CR1 -3 1574 987 2050 121 59 9 chr21 2355148 2355486 -32552084 - THE1A LTR MaLR 0 355 1 239 289 74 16 chr21 2356220 2356341 -32551229 - MER117 DNA MER1_type -53 144 17 603 274 6 24 chr21 2357323 2357491 -32550079 - LTR33 LTR ERVL -356 165 1 4423 92 3 2 chr21 2358521 2359127 -32548443 - L1PA14 LINE L1 -3 6158 5552 1055 351 11 15 chr21 2359578 2360039 -32547531 + L1MEc LINE L1 139 597 -5799 933 185 50 12 chr21 2360056 2360315 -32547255 + L1MEc LINE L1 663 931 -5465 4403 260 49 41 chr21 2360376 2361223 -32546347 + L1MEc LINE L1 1043 1881 -4334 2317 135 113 2 chr21 2361223 2361667 -32545903 + LTR54B LTR ERV1 4 496 -2 4403 260 49 41 chr21 2361667 2362056 -32545514 + L1MEc LINE L1 1881 2265 -3950 1999 103 17 17 chr21 2362056 2362347 -32545223 + AluSq SINE Alu 1 291 -22 4403 260 49 41 chr21 2362347 2363950 -32543620 + L1MEc LINE L1 2265 3916 -2299 892 236 44 25 chr21 2363975 2364250 -32543320 + L1MCb LINE L1 1 280 -5765 1196 253 81 16 chr21 2364265 2364637 -32542933 + L1MCb LINE L1 312 707 -5338 1023 125 7 0 chr21 2364640 2364792 -32542778 + AluSp SINE Alu 138 290 -23 362 97 48 0 chr21 2364792 2364854 -32542716 + (GAGTG)n Simple_repeat Simple_repeat 3 67 0 1304 247 11 11 chr21 2364857 2365209 -32542361 + L1MCb LINE L1 701 1052 -4993 260 119 24 0 chr21 2365209 2365251 -32542319 - U2 snRNA snRNA -145 43 1 431 185 100 15 chr21 2365251 2365381 -32542189 + L1MCb LINE L1 1048 1188 -4857 446 274 77 0 chr21 2365389 2365506 -32542064 + L1MCb LINE L1 1191 1316 -5248 1428 212 31 21 chr21 2365529 2366057 -32541513 + L1MCb LINE L1 1748 2146 -4418 2095 222 43 30 chr21 2366060 2366596 -32540974 - LTR55 LTR ERV -5 543 1 1514 245 30 9 chr21 2366687 2367375 -32540195 + L1MCb LINE L1 2286 2995 -3569 1726 251 69 46 chr21 2367377 2368177 -32539393 + L1MCb LINE L1 3475 4292 -2272 719 215 100 67 chr21 2368255 2368585 -32538985 + L1MCb LINE L1 5122 5462 -1102 1377 207 14 11 chr21 2368588 2368868 -32538702 + AluJo SINE Alu 6 286 -26 981 210 37 29 chr21 2368883 2369155 -32538415 + L1MCb LINE L1 5450 5723 -841 605 232 81 32 chr21 2369197 2369443 -32538127 + L1ME2 LINE L1 4581 4838 -1308 2086 238 88 28 chr21 2369442 2370353 -32537217 + L1ME2 LINE L1 5176 6143 -21 2273 108 22 41 chr21 2370468 2370883 -32536687 - L1PA13 LINE L1 -3 6160 5754 1066 107 0 7 chr21 2370891 2371041 -32536529 - AluSq/x SINE Alu -164 149 1 486 108 0 0 chr21 2371042 2371116 -32536454 - L1PA13 LINE L1 -1815 4331 4258 941 116 0 0 chr21 2371116 2371254 -32536316 + AluSg/x SINE Alu 172 309 -1 5266 154 18 5 chr21 2371256 2372149 -32535421 - L1PA13 LINE L1 -1887 4259 3355 1293 88 0 88 chr21 2372155 2372370 -32535200 - AluSx SINE Alu -116 196 1 366 207 0 67 chr21 2372417 2372596 -32534974 + (CAGGG)n Simple_repeat Simple_repeat 1 167 0 219 128 0 90 chr21 2372603 2372681 -32534889 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 882 113 0 8 chr21 2372736 2372869 -32534701 - AluSq/x SINE Alu -176 137 6 444 225 22 84 chr21 2372873 2373051 -32534519 + MIR SINE MIR 96 262 0 334 156 0 102 chr21 2373163 2373349 -32534221 + (CCCTG)n Simple_repeat Simple_repeat 3 169 0 289 174 0 104 chr21 2373542 2373743 -32533827 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 435 163 0 87 chr21 2373786 2373982 -32533588 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 378 167 3 96 chr21 2374012 2374329 -32533241 + (CAGGG)n Simple_repeat Simple_repeat 1 287 0 254 139 0 58 chr21 2374641 2374727 -32532843 + (CAGGG)n Simple_repeat Simple_repeat 1 81 0 385 182 5 88 chr21 2375010 2375202 -32532368 + (CAGGG)n Simple_repeat Simple_repeat 1 176 0 327 143 0 148 chr21 2375379 2375589 -32531981 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 189 178 0 59 chr21 2375814 2375915 -32531655 + (CAGGG)n Simple_repeat Simple_repeat 1 95 0 334 154 0 109 chr21 2375942 2376143 -32531427 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 277 157 0 116 chr21 2376178 2376376 -32531194 + (CAGGG)n Simple_repeat Simple_repeat 1 175 0 182 57 0 94 chr21 2376377 2376430 -32531140 + (CAGGC)n Simple_repeat Simple_repeat 5 52 0 211 159 8 56 chr21 2376511 2376637 -32530933 + (CAGGG)n Simple_repeat Simple_repeat 1 120 0 227 169 13 97 chr21 2376646 2376800 -32530770 + (CAGGC)n Simple_repeat Simple_repeat 3 143 0 221 182 0 53 chr21 2376839 2376971 -32530599 + (CAGGG)n Simple_repeat Simple_repeat 2 126 0 4158 215 64 9 chr21 2378292 2379568 -32528002 + L1 LINE L1 2785 4121 -2025 1006 150 16 6 chr21 2379568 2379840 -32527730 - HSREP522 Satellite telomeric -185 274 1 362 283 19 19 chr21 2380340 2380552 -32527018 + HSREP522 Satellite telomeric 121 332 -190 22 35 0 0 chr21 2383229 2383258 -32524312 + AT_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr21 2383296 2383341 -32524229 + (TA)n Simple_repeat Simple_repeat 2 46 0 2067 125 3 0 chr21 2383347 2383658 -32523912 - AluSx SINE Alu 0 312 1 243 205 54 18 chr21 2383683 2383795 -32523775 + (TA)n Simple_repeat Simple_repeat 2 117 0 27 0 0 0 chr21 2384745 2384772 -32522798 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 2385238 2385259 -32522311 + AT_rich Low_complexity Low_complexity 1 21 0 1657 172 10 0 chr21 2385603 2385893 -32521677 + AluJo SINE Alu 1 293 -19 487 288 121 25 chr21 2385901 2386099 -32521471 - MIR SINE MIR -26 236 20 204 40 0 0 chr21 2387339 2387364 -32520206 + (TAA)n Simple_repeat Simple_repeat 3 27 0 200 242 11 0 chr21 2387553 2387648 -32519922 + CT-rich Low_complexity Low_complexity 2 97 0 247 300 0 0 chr21 2387712 2387792 -32519778 + (TG)n Simple_repeat Simple_repeat 1 80 0 591 204 15 0 chr21 2389191 2389323 -32518247 + GSATX Satellite centromeric 64 197 -21 576 219 4 17 chr21 2389337 2389574 -32517996 - GSATX Satellite centromeric -116 234 1 1012 222 10 14 chr21 2389590 2391989 -32515581 - GSATX Satellite centromeric -9 2389 1 683 204 0 0 chr21 2392003 2392145 -32515425 - GSATX Satellite centromeric -20 198 57 205 245 0 21 chr21 2394585 2394679 -32512891 + GA-rich Low_complexity Low_complexity 3 94 0 689 168 12 20 chr21 2394718 2394964 -32512606 + GA-rich Low_complexity Low_complexity 1 244 0 1227 209 7 47 chr21 2394989 2395285 -32512285 + AluJb SINE Alu 5 288 -24 1923 106 75 17 chr21 2395386 2395679 -32511891 + AluSg SINE Alu 1 310 0 398 168 35 9 chr21 2395682 2395795 -32511775 + GA-rich Low_complexity Low_complexity 4 119 0 1821 143 34 0 chr21 2396842 2397136 -32510434 + AluSx SINE Alu 1 304 -8 1466 160 4 0 chr21 2397137 2397368 -32510202 + PABL_A LTR ERV1 429 660 0 904 132 0 101 chr21 2397434 2397623 -32509947 + AluJo SINE Alu 120 289 -23 1114 243 74 13 chr21 2397756 2398065 -32509505 + ERVL LTR ERVL 3261 3588 -2176 226 176 59 39 chr21 2398075 2398126 -32509444 + AluSp SINE Alu 119 170 -133 4586 67 3 2 chr21 2398132 2398711 -32508859 - LTR14C LTR ERVK 0 587 8 1666 167 4 0 chr21 2398711 2398974 -32508596 + AluSx SINE Alu 29 292 -20 469 136 0 0 chr21 2399019 2399085 -32508485 + AluJ/FLAM SINE Alu 1 66 -246 1468 151 125 11 chr21 2399171 2399188 -32508382 - AluSp SINE Alu 0 303 289 288 0 0 0 chr21 2399188 2399220 -32508350 + (TAG)n Simple_repeat Simple_repeat 1 32 0 1468 151 125 11 chr21 2399220 2399474 -32508096 - AluSp SINE Alu -14 289 1 1982 107 37 4 chr21 2399476 2399771 -32507799 - AluSg SINE Alu 0 305 2 759 171 7 7 chr21 2400524 2400664 -32506906 + AluJb SINE Alu 2 141 -171 31 44 0 0 chr21 2400681 2400726 -32506844 + AT_rich Low_complexity Low_complexity 1 45 0 1198 161 141 24 chr21 2400804 2401059 -32506511 - AluJb SINE Alu -17 285 1 2183 119 3 0 chr21 2402930 2403233 -32504337 + AluSq SINE Alu 3 306 -7 1948 112 15 8 chr21 2403252 2403519 -32504051 - AluSx SINE Alu -43 269 1 2168 123 3 0 chr21 2403641 2403942 -32503628 - AluSq SINE Alu -11 302 1 1966 154 7 0 chr21 2404804 2405097 -32502473 - AluSx SINE Alu -17 295 1 2080 113 7 0 chr21 2405448 2405730 -32501840 + AluSx SINE Alu 3 286 -26 621 100 53 0 chr21 2405748 2405918 -32501652 + (TA)n Simple_repeat Simple_repeat 2 180 0 31 0 0 0 chr21 2405918 2405949 -32501621 + AT_rich Low_complexity Low_complexity 1 31 0 199 116 27 75 chr21 2405949 2406096 -32501474 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 30 27 0 0 chr21 2406096 2406133 -32501437 + AT_rich Low_complexity Low_complexity 1 37 0 201 74 0 0 chr21 2406422 2406449 -32501121 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 3526 169 32 15 chr21 2406456 2406729 -32500841 - L1 LINE L1 -3243 3605 3338 2124 139 7 0 chr21 2406729 2407030 -32500540 - AluSx SINE Alu -9 303 1 3526 169 32 15 chr21 2407030 2407802 -32499768 - L1 LINE L1 -3510 3338 2540 24 53 0 0 chr21 2408637 2408675 -32498895 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr21 2409097 2409137 -32498433 + AT_rich Low_complexity Low_complexity 1 40 0 1123 107 117 29 chr21 2409734 2409939 -32497631 - LTR12 LTR ERV1 0 671 449 332 266 9 0 chr21 2409941 2410050 -32497520 - LTR30 LTR ERV1 -69 653 544 6204 99 21 26 chr21 2410050 2411200 -32496370 - pTR5 LTR ERV1 -413 2025 743 228 237 21 82 chr21 2411220 2411317 -32496253 + MIR3 SINE MIR 110 200 -8 1893 137 3 18 chr21 2411435 2411768 -32495802 + AluSx SINE Alu 1 329 0 1074 182 0 0 chr21 2411901 2412077 -32495493 - AluJ SINE Alu -5 307 132 1704 168 23 16 chr21 2412097 2412407 -32495163 + AluJo SINE Alu 1 312 0 189 0 0 0 chr21 2412576 2412597 -32494973 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1160 131 0 6 chr21 2412597 2412772 -32494798 + FRAM SINE Alu 1 174 -2 195 114 0 0 chr21 2412962 2412997 -32494573 + (T)n Simple_repeat Simple_repeat 1 35 0 188 0 74 0 chr21 2413708 2413735 -32493835 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 209 264 174 39 chr21 2414300 2414455 -32493115 - MER5A DNA MER1_type 0 189 14 190 326 61 0 chr21 2414566 2414664 -32492906 - L3 LINE CR1 -167 1410 1307 845 136 8 15 chr21 2414746 2414878 -32492692 - AluJ SINE Alu -171 141 11 2239 136 0 0 chr21 2414937 2415246 -32492324 - AluSq SINE Alu -2 311 3 241 245 0 0 chr21 2415486 2415535 -32492035 + MIR SINE MIR 3 51 -211 956 134 29 10 chr21 2415571 2416067 -32491503 + (CACCAT)n Simple_repeat Simple_repeat 1 505 0 412 302 8 0 chr21 2416073 2416202 -32491368 - MIR SINE MIR -49 213 84 230 290 86 54 chr21 2416255 2416441 -32491129 - L3 LINE CR1 -731 846 655 2014 162 0 0 chr21 2417804 2418101 -32489469 + AluJo SINE Alu 2 298 -14 442 207 35 17 chr21 2418162 2418278 -32489292 + MIR SINE MIR 145 262 0 2134 134 0 0 chr21 2418414 2418704 -32488866 - AluSx SINE Alu -17 295 6 1981 162 0 10 chr21 2418826 2419134 -32488436 - AluJb SINE Alu -7 305 1 751 294 29 8 chr21 2419192 2419430 -32488140 - MIR SINE MIR -2 260 18 1983 112 60 0 chr21 2420053 2420338 -32487232 + AluSx SINE Alu 1 302 -10 1463 169 6 88 chr21 2420707 2421026 -32486544 - MER4A LTR ERV1 0 664 372 631 122 10 10 chr21 2421078 2421176 -32486394 - MER4A LTR ERV1 -566 98 1 1883 143 4 0 chr21 2421248 2421528 -32486042 + AluSq SINE Alu 1 281 -32 195 100 0 0 chr21 2421528 2421558 -32486012 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3664 223 37 34 chr21 2421559 2422226 -32485344 - L1M1 LINE L1 -5277 2288 1616 3802 117 25 9 chr21 2422226 2422781 -32484789 + LTR6A LTR ERV1 1 564 0 3664 223 37 34 chr21 2422781 2422946 -32484624 - L1M1 LINE L1 -5949 1616 1453 1812 164 0 16 chr21 2423085 2423389 -32484181 - AluSx SINE Alu -13 299 1 2208 111 0 43 chr21 2423540 2423864 -32483706 + AluSg SINE Alu 1 310 0 405 0 0 0 chr21 2423870 2423915 -32483655 + (TA)n Simple_repeat Simple_repeat 1 45 0 242 165 71 12 chr21 2423940 2424025 -32483545 + (TA)n Simple_repeat Simple_repeat 1 90 0 279 0 0 0 chr21 2424409 2424440 -32483130 + (TG)n Simple_repeat Simple_repeat 2 32 0 1918 183 2 64 chr21 2424779 2425053 -32482517 + MLT1B LTR MaLR 11 254 -136 1841 131 91 29 chr21 2425053 2425404 -32482166 - THE1C LTR MaLR -2 373 1 1918 183 2 64 chr21 2425404 2425534 -32482036 + MLT1B LTR MaLR 254 390 0 382 265 82 20 chr21 2425816 2425963 -32481607 + MIR SINE MIR 81 236 -26 27 49 0 0 chr21 2427780 2427821 -32479749 + AT_rich Low_complexity Low_complexity 1 41 0 2509 163 37 16 chr21 2428020 2428506 -32479064 - L1MA8 LINE L1 -1 6290 5795 198 95 14 68 chr21 2428544 2428618 -32478952 + (TA)n Simple_repeat Simple_repeat 1 70 0 5676 157 10 22 chr21 2428619 2429511 -32478059 - L1MA8 LINE L1 -502 5789 4922 980 212 5 27 chr21 2429511 2429733 -32477837 - L1PB4 LINE L1 0 6156 5940 5676 157 10 22 chr21 2429733 2430306 -32477264 - L1MA8 LINE L1 -1369 4922 4343 22 56 0 0 chr21 2430443 2430479 -32477091 + AT_rich Low_complexity Low_complexity 1 36 0 1372 270 34 31 chr21 2430578 2431361 -32476209 + L1MC3 LINE L1 841 1671 -5050 1731 113 57 60 chr21 2431361 2431571 -32475999 - THE1C LTR MaLR 0 375 165 2085 115 28 3 chr21 2431571 2431859 -32475711 + AluSc SINE Alu 1 295 -14 1731 113 57 60 chr21 2431859 2431983 -32475587 - THE1C LTR MaLR -210 165 42 365 332 51 28 chr21 2431983 2432197 -32475373 + HERV3 LTR ERV1 996 1214 -7212 251 91 0 0 chr21 2432384 2432417 -32475153 - THE1C LTR MaLR -342 33 1 386 350 47 13 chr21 2432420 2432654 -32474916 + L1MC3 LINE L1 1623 1864 -4676 553 237 65 75 chr21 2432813 2433185 -32474385 + LTR15 LTR ERV1 112 479 -14 24697 269 36 41 chr21 2433198 2441974 -32465596 + HERV15 LTR ERV1 1 8731 -4 277 278 16 48 chr21 2442336 2442462 -32465108 + LTR15 LTR ERV1 358 479 -14 1471 83 29 19 chr21 2442466 2442671 -32464899 + AluSp SINE Alu 89 295 -18 334 286 53 0 chr21 2442678 2442811 -32464759 + L1M1 LINE L1 2869 3008 -4557 592 245 62 65 chr21 2442928 2443205 -32464365 + L1MC3 LINE L1 2258 2534 -4187 237 108 0 0 chr21 2443205 2443242 -32464328 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1805 121 11 11 chr21 2443247 2443520 -32464050 - AluSc SINE Alu -36 273 1 592 245 62 65 chr21 2443520 2443607 -32463963 + L1MC3 LINE L1 2538 2627 -4094 2061 244 65 34 chr21 2443601 2444124 -32463446 + L1MC3 LINE L1 5786 6301 -259 1807 199 21 0 chr21 2444124 2444460 -32463110 - MER2 DNA MER2_type 0 344 2 2061 244 65 34 chr21 2444460 2444676 -32462894 + L1MC3 LINE L1 6301 6509 -51 362 257 148 35 chr21 2445464 2445666 -32461904 + L1ME LINE L1 5592 5816 -305 194 344 146 0 chr21 2446088 2446184 -32461386 + MIR SINE MIR 79 188 -74 23 33 0 0 chr21 2447237 2447267 -32460303 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 2447464 2447488 -32460082 + AT_rich Low_complexity Low_complexity 1 24 0 924 170 0 0 chr21 2447857 2448004 -32459566 + AluSg/x SINE Alu 133 279 -31 3942 253 38 26 chr21 2448436 2448604 -32458966 + L1M2 LINE L1 1067 1232 -5616 2061 101 0 0 chr21 2448604 2448881 -32458689 - AluY SINE Alu 0 311 35 3942 253 38 26 chr21 2448881 2449686 -32457884 + L1M2 LINE L1 1232 2177 -4671 204 97 0 0 chr21 2449686 2449717 -32457853 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3942 253 38 26 chr21 2449717 2450333 -32457237 + L1M2 LINE L1 2177 2784 -4064 9039 200 34 17 chr21 2450342 2451604 -32455966 + L1P5 LINE L1 3160 4475 -1681 1420 211 6 32 chr21 2451604 2451917 -32455653 + AluJo SINE Alu 1 305 -7 9039 200 34 17 chr21 2451917 2452903 -32454667 + L1P5 LINE L1 4475 5443 -713 4458 226 23 16 chr21 2452906 2453889 -32453681 + L1M1 LINE L1 15 1004 -6561 10683 152 20 23 chr21 2453898 2455754 -32451816 + L1M1 LINE L1 1118 2968 -4597 534 186 0 24 chr21 2455755 2455879 -32451691 + L1PB4 LINE L1 6034 6154 -2 25 0 0 0 chr21 2456187 2456212 -32451358 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 2456264 2456285 -32451285 + AT_rich Low_complexity Low_complexity 1 21 0 336 344 38 0 chr21 2456331 2456491 -32451079 - L1ME LINE L1 -303 5818 5653 904 286 26 0 chr21 2456500 2456734 -32450836 - MIR SINE MIR -5 257 18 1516 283 49 32 chr21 2457131 2458009 -32449561 - L2 LINE L2 0 3313 2424 36 40 0 0 chr21 2458036 2458086 -32449484 + AT_rich Low_complexity Low_complexity 1 50 0 1294 50 12 0 chr21 2459824 2459985 -32447585 + L1PA7 LINE L1 5988 6150 -4 214 210 42 28 chr21 2460099 2460151 -32447419 + (TA)n Simple_repeat Simple_repeat 2 52 -94 1763 171 3 3 chr21 2460151 2460449 -32447121 - AluJb SINE Alu -14 298 1 214 210 42 28 chr21 2460449 2460539 -32447031 + (TA)n Simple_repeat Simple_repeat 52 146 0 25 31 0 0 chr21 2461132 2461164 -32446406 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr21 2462601 2462622 -32444948 + AT_rich Low_complexity Low_complexity 1 21 0 485 237 15 15 chr21 2462949 2463084 -32444486 - MIR SINE MIR -54 208 74 423 216 0 0 chr21 2463236 2463347 -32444223 + GA-rich Low_complexity Low_complexity 6 116 0 2243 115 7 0 chr21 2464438 2464742 -32442828 - AluSg SINE Alu -4 306 1 202 422 0 10 chr21 2464747 2464849 -32442721 + L2 LINE L2 2866 2966 -306 437 249 30 61 chr21 2465003 2465168 -32442402 + L2 LINE L2 3152 3311 -2 304 292 75 20 chr21 2465181 2465328 -32442242 + L2 LINE L2 3159 3313 0 1686 170 23 45 chr21 2466088 2466441 -32441129 + MER7A DNA MER2_type 4 346 0 1920 156 30 24 chr21 2466723 2467096 -32440474 - THE1C LTR MaLR 0 375 1 5141 120 8 5 chr21 2467096 2467848 -32439722 - THE1C-int LTR MaLR 0 1580 827 754 126 55 16 chr21 2467853 2467980 -32439590 - THE1C LTR MaLR -243 132 1 1549 108 0 9 chr21 2469737 2469997 -32437573 - AluSc SINE Alu 0 326 69 208 325 25 12 chr21 2470060 2470140 -32437430 + MIR3 SINE MIR 127 207 -1 218 217 0 0 chr21 2470406 2470452 -32437118 + (TA)n Simple_repeat Simple_repeat 1 46 0 395 339 81 18 chr21 2471170 2471391 -32436179 + L1MD2 LINE L1 456 690 -5840 22 0 0 0 chr21 2471771 2471793 -32435777 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 2472210 2472238 -32435332 + AT_rich Low_complexity Low_complexity 1 28 0 2921 227 69 46 chr21 2472489 2472801 -32434769 + L1MD2 LINE L1 983 1286 -5254 229 171 0 0 chr21 2472801 2472836 -32434734 + tRNA-Arg-AGA tRNA tRNA 1 35 -41 2921 227 69 46 chr21 2472836 2473656 -32433914 + L1MD2 LINE L1 1286 2176 -4364 1783 221 18 72 chr21 2473793 2474308 -32433262 + MLT1D LTR MaLR 19 505 0 1541 285 27 17 chr21 2474309 2474895 -32432675 + MLT1D-int LTR MaLR 2 593 -778 587 307 26 54 chr21 2475408 2475721 -32431849 + MLT1D-int LTR MaLR 1335 1638 -97 1538 256 44 51 chr21 2475799 2478927 -32428643 + L1MD2 LINE L1 3056 6182 -571 359 163 51 19 chr21 2478927 2479141 -32428429 + (TA)n Simple_repeat Simple_repeat 1 221 0 482 112 62 0 chr21 2479153 2479313 -32428257 + (TA)n Simple_repeat Simple_repeat 2 171 0 366 167 55 12 chr21 2479313 2479571 -32427999 + (TATAA)n Simple_repeat Simple_repeat 1 269 0 435 187 37 22 chr21 2479618 2479719 -32427851 - L1MD1 LINE L1 -280 5884 5780 228 83 28 0 chr21 2479783 2479819 -32427751 + L1P5 LINE L1 5783 5819 -332 850 160 22 33 chr21 2479789 2479970 -32427600 + L1MD2 LINE L1 5790 5968 -274 1144 248 50 24 chr21 2479974 2480313 -32427257 + L1MD2 LINE L1 6405 6752 -1 28 48 0 0 chr21 2480702 2480744 -32426826 + AT_rich Low_complexity Low_complexity 1 42 0 380 207 47 30 chr21 2481591 2481760 -32425810 + (TA)n Simple_repeat Simple_repeat 2 173 0 22 70 0 0 chr21 2481762 2481805 -32425765 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr21 2483787 2483814 -32423756 + AT_rich Low_complexity Low_complexity 1 27 0 43683 40 1 2 chr21 2484385 2490542 -32417028 + L1PA3 LINE L1 1 6152 -3 482 314 48 31 chr21 2490552 2490842 -32416728 - L2 LINE L2 -74 3239 2945 252 0 0 0 chr21 2492206 2492234 -32415336 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2002 107 4 4 chr21 2492237 2492517 -32415053 - AluSg SINE Alu -30 280 1 987 273 52 11 chr21 2492543 2492924 -32414646 - L1ME3A LINE L1 -200 5970 5574 2476 44 7 0 chr21 2493562 2493860 -32413710 + AluY SINE Alu 1 300 -11 36 0 0 0 chr21 2493870 2493906 -32413664 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr21 2494174 2494225 -32413345 + AT_rich Low_complexity Low_complexity 1 51 0 936 70 0 0 chr21 2494454 2494582 -32412988 - L1PA5 LINE L1 0 6154 6027 390 258 16 23 chr21 2494589 2494717 -32412853 - L1MEd LINE L1 -3393 2736 2610 421 328 55 5 chr21 2494718 2494919 -32412651 - L1MEd LINE L1 -3596 2533 2323 274 77 0 0 chr21 2496283 2496322 -32411248 + MADE1 DNA Mariner 42 80 0 327 289 96 54 chr21 2496325 2496585 -32410985 - L1MEd LINE L1 -5286 833 563 3709 70 25 4 chr21 2497244 2498215 -32409355 + MER11A LTR ERVK 1 1266 0 412 285 39 8 chr21 2498705 2498835 -32408735 + MIR SINE MIR 122 255 -7 1463 0 0 6 chr21 2500221 2500395 -32407175 + L1P LINE L1 4334 4506 -1640 8173 31 0 0 chr21 2500395 2502152 -32405418 + L1PA4 LINE L1 4382 6152 -3 22 0 0 0 chr21 2502152 2502174 -32405396 + AT_rich Low_complexity Low_complexity 1 22 0 2062 110 3 20 chr21 2503261 2503561 -32404009 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr21 2503601 2503625 -32403945 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr21 2503913 2503965 -32403605 + AT_rich Low_complexity Low_complexity 1 52 0 226 270 95 58 chr21 2504167 2504273 -32403297 - MIR SINE MIR -98 164 50 2156 153 0 21 chr21 2504273 2504646 -32402924 + MLT1A1 LTR MaLR 1 365 0 226 270 95 58 chr21 2504646 2504676 -32402894 - MIR SINE MIR -212 50 23 486 316 70 9 chr21 2505406 2505621 -32401949 - MIR SINE MIR 0 262 35 2148 102 0 0 chr21 2505971 2506256 -32401314 + AluSx SINE Alu 21 305 -7 27 73 0 0 chr21 2506429 2506484 -32401086 + AT_rich Low_complexity Low_complexity 1 55 0 187 234 21 0 chr21 2507200 2507247 -32400323 - L2 LINE L2 -9 3263 3216 34 42 0 0 chr21 2507528 2507576 -32399994 + AT_rich Low_complexity Low_complexity 1 48 0 214 196 20 0 chr21 2507806 2507857 -32399713 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 241 308 23 23 chr21 2508038 2508171 -32399399 + L1ME LINE L1 5529 5661 -460 2495 50 0 0 chr21 2508762 2509064 -32398506 + AluYa8 SINE Alu 1 302 -8 22 35 0 0 chr21 2509169 2509198 -32398372 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr21 2509737 2509762 -32397808 + AT_rich Low_complexity Low_complexity 1 25 0 2097 121 3 0 chr21 2509852 2510149 -32397421 + AluSx SINE Alu 5 302 -10 2039 231 36 26 chr21 2510250 2511311 -32396259 + L1M4c LINE L1 1506 2624 -869 4221 184 25 38 chr21 2511316 2512509 -32395061 + L1MB3 LINE L1 5015 6183 0 367 289 47 13 chr21 2513218 2513367 -32394203 + L1ME1 LINE L1 5045 5198 -948 2053 251 70 47 chr21 2513447 2514211 -32393359 + L1ME1 LINE L1 5318 6104 -62 1522 201 10 7 chr21 2514211 2514510 -32393060 + AluJo SINE Alu 1 300 -12 2053 251 70 47 chr21 2514510 2514571 -32392999 + L1ME1 LINE L1 6104 6162 -4 231 36 0 0 chr21 2514693 2514721 -32392849 + (CA)n Simple_repeat Simple_repeat 2 29 0 41 48 0 0 chr21 2514807 2514869 -32392701 + AT_rich Low_complexity Low_complexity 1 62 0 19509 184 19 16 chr21 2515022 2519101 -32388469 + L1PA11 LINE L1 1220 5309 -837 13571 32 0 18 chr21 2519101 2521528 -32386042 + L1PA4 LINE L1 3736 6153 -2 1898 124 14 0 chr21 2521529 2521812 -32385758 + L1PA11 LINE L1 5769 6055 -119 201 167 15 30 chr21 2521990 2522056 -32385514 + A-rich Low_complexity Low_complexity 5 69 0 345 323 62 16 chr21 2522673 2522865 -32384705 + L1MC/D LINE L1 5254 5454 -2354 405 226 85 67 chr21 2523868 2524032 -32383538 + MIR3 SINE MIR 33 199 -9 1352 128 56 12 chr21 2524859 2525108 -32382462 + L1MA5A LINE L1 6030 6289 -8 191 283 19 0 chr21 2525288 2525341 -32382229 - MER5A DNA MER1_type -45 144 91 276 256 89 0 chr21 2525905 2525995 -32381575 + MER5A DNA MER1_type 9 106 -83 1193 199 23 23 chr21 2526163 2526429 -32381141 + MER58B DNA MER1_type 59 324 -17 1766 163 7 0 chr21 2526441 2526730 -32380840 + AluJb SINE Alu 6 296 -16 180 152 0 0 chr21 2528277 2528310 -32379260 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chr21 2528426 2528461 -32379109 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 2529089 2529118 -32378452 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 2529243 2529272 -32378298 + AT_rich Low_complexity Low_complexity 1 29 0 206 32 32 0 chr21 2530085 2530116 -32377454 + (ATG)n Simple_repeat Simple_repeat 2 33 0 225 180 100 0 chr21 2530118 2530168 -32377402 - MIR SINE MIR -10 252 198 183 42 0 0 chr21 2530631 2530655 -32376915 + (TA)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr21 2530758 2530789 -32376781 + AT_rich Low_complexity Low_complexity 1 31 0 435 38 0 0 chr21 2530952 2531005 -32376565 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 244 282 26 13 chr21 2531016 2531094 -32376476 - L2 LINE L2 -1 3312 3234 2267 99 3 0 chr21 2531355 2531649 -32375921 + AluSq SINE Alu 1 295 -18 247 234 16 0 chr21 2531688 2531752 -32375818 + (TA)n Simple_repeat Simple_repeat 2 66 0 266 330 61 9 chr21 2532669 2532784 -32374786 - MIR3 SINE MIR -48 160 40 24 53 0 0 chr21 2533738 2533776 -32373794 + GC_rich Low_complexity Low_complexity 1 38 0 333 344 51 0 chr21 2534750 2534948 -32372622 + MIR SINE MIR 19 229 -33 22 0 0 0 chr21 2535631 2535653 -32371917 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 2536559 2536583 -32370987 + AT_rich Low_complexity Low_complexity 1 24 0 351 22 22 0 chr21 2538288 2538334 -32369236 + MADE1 DNA Mariner 1 47 -33 201 343 76 35 chr21 2539072 2539244 -32368326 - MIR SINE MIR -46 216 38 250 226 0 40 chr21 2539860 2539984 -32367586 + (TA)n Simple_repeat Simple_repeat 1 119 0 214 306 0 20 chr21 2540300 2540349 -32367221 + MIR SINE MIR 34 81 -181 1378 201 51 0 chr21 2541048 2541302 -32366268 - MLT1C LTR MaLR 0 467 201 1142 186 43 125 chr21 2541310 2541686 -32365884 + MSTD LTR MaLR 1 345 -51 268 51 26 0 chr21 2541733 2541772 -32365798 + MSTD LTR MaLR 389 428 0 1167 149 10 5 chr21 2541772 2541966 -32365604 - MLT1C LTR MaLR -272 195 1 1613 158 56 11 chr21 2542506 2542790 -32364780 + AluSx SINE Alu 1 297 -15 341 316 51 0 chr21 2543111 2543228 -32364342 - MIR SINE MIR -69 139 17 262 130 0 87 chr21 2543591 2543660 -32363910 + MER3 DNA MER1_type 112 122 -87 1504 177 49 14 chr21 2543658 2544003 -32363567 + MER3 DNA MER1_type 2235 2591 0 2202 120 0 3 chr21 2544003 2544312 -32363258 + AluSx SINE Alu 1 308 -4 26 30 0 0 chr21 2545989 2546022 -32361548 + AT_rich Low_complexity Low_complexity 1 33 0 1819 141 25 40 chr21 2546156 2546510 -32361060 + THE1C LTR MaLR 1 349 -26 1021 94 13 0 chr21 2546525 2546674 -32360896 + THE1C-int LTR MaLR 6 156 -1424 9767 109 17 31 chr21 2546671 2548177 -32359393 + THE1C-int LTR MaLR 97 1580 0 2073 127 29 35 chr21 2548177 2548554 -32359016 + THE1C LTR MaLR 1 375 0 213 350 80 0 chr21 2549598 2549698 -32357872 + L2 LINE L2 2271 2378 -936 331 274 62 58 chr21 2551674 2551900 -32355670 - L2 LINE L2 -55 3258 3032 185 283 120 11 chr21 2551939 2552031 -32355539 - L2 LINE L2 -454 2860 2759 2275 301 59 19 chr21 2552047 2552727 -32354843 - L2 LINE L2 -662 2652 1924 1876 147 7 3 chr21 2552727 2553019 -32354551 + AluSx SINE Alu 1 293 -19 2275 301 59 19 chr21 2553019 2553250 -32354320 - L2 LINE L2 -1390 1924 1704 21 36 0 0 chr21 2553684 2553712 -32353858 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr21 2555492 2555519 -32352051 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 422 320 73 32 chr21 2557421 2557790 -32349780 - L1M4 LINE L1 -808 5338 4955 1795 189 22 38 chr21 2558931 2559302 -32348268 + MLT1A1 LTR MaLR 1 365 0 2737 144 31 54 chr21 2559850 2560406 -32347164 + L1MA7 LINE L1 5720 6262 -29 751 305 8 13 chr21 2560638 2560877 -32346693 + MLT2F LTR ERVL 179 416 -247 342 0 0 0 chr21 2560891 2560929 -32346641 + (TG)n Simple_repeat Simple_repeat 2 39 0 471 116 0 0 chr21 2561664 2561733 -32345837 - LTR1B LTR ERV1 0 826 758 1081 300 48 31 chr21 2562182 2562595 -32344975 + MLT1H1 LTR MaLR 9 428 -127 1521 307 63 13 chr21 2563835 2564308 -32343262 + L2 LINE L2 20 516 -2798 955 256 29 18 chr21 2564362 2564643 -32342927 + L2 LINE L2 609 892 -2422 2527 133 41 7 chr21 2565252 2565666 -32341904 - MSTA LTR MaLR 0 428 1 856 95 119 12 chr21 2566636 2566837 -32340733 + MER11B LTR ERVK 1 317 -949 336 118 0 0 chr21 2567041 2567092 -32340478 + MER11B LTR ERVK 309 359 -877 4115 155 92 30 chr21 2567068 2567966 -32339604 + MER11A LTR ERVK 308 1261 -5 1468 105 38 0 chr21 2568463 2568672 -32338898 - AluSg/x SINE Alu -13 297 81 1893 143 20 31 chr21 2570294 2570644 -32336926 - MER7A DNA MER2_type 0 346 3 450 0 0 0 chr21 2571736 2571786 -32335784 + (TG)n Simple_repeat Simple_repeat 2 51 0 250 207 17 17 chr21 2572203 2572261 -32335309 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 929 174 69 21 chr21 2572728 2573063 -32334507 - L1MC/D LINE L1 -745 5401 5140 4558 113 12 1 chr21 2573070 2573754 -32333816 - L1PA11 LINE L1 -3 6171 5481 602 159 0 0 chr21 2573756 2573863 -32333707 - L1 LINE L1 -1293 4853 4747 2537 28 0 0 chr21 2574166 2574451 -32333119 - AluY SINE Alu -19 292 8 476 73 0 12 chr21 2574663 2574745 -32332825 - L1PB1 LINE L1 -1 6150 6070 296 226 28 23 chr21 2574764 2574941 -32332629 + (TA)n Simple_repeat Simple_repeat 2 179 0 260 201 0 0 chr21 2574975 2575035 -32332535 + MLT2C2 LTR ERVL 417 463 -1 611 239 0 0 chr21 2575127 2575257 -32332313 - LTR16A LTR ERVL -5 445 316 2103 111 6 22 chr21 2575582 2575898 -32331672 - AluSq SINE Alu -2 311 1 1113 160 0 57 chr21 2576304 2576516 -32331054 + AluJb SINE Alu 110 309 -3 594 286 17 36 chr21 2576527 2576939 -32330631 + L1M4 LINE L1 2215 2618 -3528 868 248 22 13 chr21 2577254 2577480 -32330090 + ERVL LTR ERVL 4862 5089 -675 506 284 120 27 chr21 2578149 2578374 -32329196 + MIR SINE MIR 7 252 -10 23 33 0 0 chr21 2578715 2578745 -32328825 + AT_rich Low_complexity Low_complexity 1 30 0 1437 180 41 35 chr21 2578957 2579284 -32328286 + MER61B LTR ERV1 1 423 -2 512 224 33 20 chr21 2581223 2581375 -32326195 - MER104 DNA MER2_type -6 1889 1736 302 259 12 12 chr21 2581412 2581493 -32326077 - MER104 DNA MER2_type -557 1338 1258 531 248 80 24 chr21 2581543 2581793 -32325777 + MER34 LTR ERV1 1 344 -380 265 228 63 87 chr21 2581921 2582127 -32325443 + MER34 LTR ERV1 337 537 -5 541 292 57 50 chr21 2582134 2582415 -32325155 + L2 LINE L2 3031 3313 0 2176 126 103 5 chr21 2583287 2583676 -32323894 + MSTA LTR MaLR 1 427 -1 223 357 97 38 chr21 2583719 2583904 -32323666 + L2 LINE L2 3118 3313 0 190 320 96 51 chr21 2584129 2584326 -32323244 + MIR3 SINE MIR 2 207 -1 217 284 23 57 chr21 2585367 2585455 -32322115 - MIR SINE MIR -131 131 47 445 212 76 0 chr21 2585640 2585700 -32321870 - L1ME4a LINE L1 -1 6120 6066 225 0 0 0 chr21 2585700 2585725 -32321845 + (TA)n Simple_repeat Simple_repeat 1 25 0 445 212 76 0 chr21 2585725 2585782 -32321788 - L1ME4a LINE L1 -55 6066 5994 23 33 0 0 chr21 2585850 2585880 -32321690 + AT_rich Low_complexity Low_complexity 1 30 0 2158 209 56 47 chr21 2585880 2586580 -32320990 + Charlie1 DNA MER1_type 2052 2757 -4 2248 104 3 3 chr21 2586600 2586907 -32320663 + AluSc SINE Alu 1 307 -2 640 220 122 109 chr21 2587470 2587546 -32320024 + MSTD LTR MaLR 6 80 -316 2233 115 0 0 chr21 2587546 2587851 -32319719 - AluSg SINE Alu -5 305 1 640 220 122 109 chr21 2587851 2588160 -32319410 + MSTD LTR MaLR 80 396 0 284 158 18 0 chr21 2588623 2588680 -32318890 + (TA)n Simple_repeat Simple_repeat 1 58 0 321 150 33 0 chr21 2588681 2588741 -32318829 - Charlie1 DNA MER1_type -619 2142 2081 21 0 0 0 chr21 2592583 2592604 -32314966 + AT_rich Low_complexity Low_complexity 1 21 0 831 173 0 19 chr21 2593015 2593217 -32314353 + AluJb SINE Alu 2 291 -21 2000 139 0 0 chr21 2594090 2594385 -32313185 + AluSx SINE Alu 3 297 -15 973 246 73 26 chr21 2595531 2595894 -32311676 - MLT1H LTR MaLR -167 388 1 188 67 33 0 chr21 2596772 2596802 -32310768 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 299 130 19 0 chr21 2596886 2596940 -32310630 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 27 29 0 0 chr21 2597192 2597226 -32310344 + AT_rich Low_complexity Low_complexity 1 34 0 615 335 62 56 chr21 2598518 2598605 -32308965 - L2 LINE L2 -908 2406 2321 6780 106 5 9 chr21 2598605 2599578 -32307992 - LTR5 LTR ERVK 0 969 1 615 335 62 56 chr21 2599578 2600025 -32307545 - L2 LINE L2 -993 2321 1869 2239 83 0 10 chr21 2600322 2600635 -32306935 + AluY SINE Alu 1 310 -1 24 0 0 0 chr21 2600690 2600714 -32306856 + AT_rich Low_complexity Low_complexity 1 24 0 1940 62 0 12 chr21 2601554 2601823 -32305747 - AluY SINE Alu 0 306 41 2504 105 22 8 chr21 2602065 2602435 -32305135 - THE1C LTR MaLR 0 375 1 1949 147 0 0 chr21 2603768 2604067 -32303503 + AluSx SINE Alu 1 299 -13 417 291 116 48 chr21 2604123 2604374 -32303196 - MLT1L LTR MaLR -227 388 121 1856 178 127 69 chr21 2606447 2606937 -32300633 - MLT2B1 LTR ERVL -2 518 1 555 297 30 6 chr21 2606945 2607110 -32300460 - MIR SINE MIR -70 192 24 210 91 0 0 chr21 2607179 2607212 -32300358 + (CA)n Simple_repeat Simple_repeat 2 34 0 1680 286 60 17 chr21 2607579 2608408 -32299162 - L2 LINE L2 -4 3309 2444 216 0 0 0 chr21 2609122 2609146 -32298424 + (TG)n Simple_repeat Simple_repeat 2 25 0 204 40 0 0 chr21 2609601 2609626 -32297944 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr21 2610200 2610224 -32297346 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1918 153 13 0 chr21 2610829 2611142 -32296428 + L1MC1 LINE L1 5997 6313 -20 1947 187 66 43 chr21 2611156 2611743 -32295827 - MER39 LTR ERV1 0 707 1 1860 161 38 16 chr21 2612150 2612517 -32295053 - THE1C LTR MaLR 0 375 1 2257 124 4 29 chr21 2612751 2612890 -32294680 + L1PB4 LINE L1 5658 5799 -357 444 118 0 0 chr21 2612890 2612958 -32294612 + (CA)n Simple_repeat Simple_repeat 2 69 0 2257 124 4 29 chr21 2612958 2613269 -32294301 + L1PB4 LINE L1 5799 6156 0 932 183 35 25 chr21 2613344 2613541 -32294029 + MER3 DNA MER1_type 2 200 -9 592 71 0 0 chr21 2614732 2614902 -32292668 - AluY SINE Alu 0 311 210 234 32 0 0 chr21 2614902 2614933 -32292637 - AluY SINE Alu -101 32 2 1542 200 16 16 chr21 2615316 2615681 -32291889 - L1MB1 LINE L1 -1 6167 5803 21 0 0 0 chr21 2616021 2616042 -32291528 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr21 2616421 2616447 -32291123 + AT_rich Low_complexity Low_complexity 1 26 0 2642 101 11 0 chr21 2616473 2616850 -32290720 - L1PA11 LINE L1 0 6174 5794 372 326 61 0 chr21 2617476 2617623 -32289947 - L2 LINE L2 0 3313 3158 2291 97 7 0 chr21 2618754 2619064 -32288506 + AluSp SINE Alu 1 312 -1 21 71 0 0 chr21 2619234 2619276 -32288294 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr21 2619465 2619514 -32288056 + AT_rich Low_complexity Low_complexity 1 49 0 1685 229 22 6 chr21 2620559 2620940 -32286630 - MLT2D LTR ERVL -20 444 5 2110 103 3 0 chr21 2620943 2621277 -32286293 + AluSp SINE Alu 1 335 0 260 70 23 0 chr21 2621788 2621831 -32285739 + (TG)n Simple_repeat Simple_repeat 1 44 0 232 247 164 0 chr21 2622411 2622484 -32285086 - MIR SINE MIR -6 256 172 211 136 68 0 chr21 2623568 2623612 -32283958 + T-rich Low_complexity Low_complexity 5 51 0 2155 163 25 17 chr21 2624898 2625724 -32281846 + L1MA9 LINE L1 5434 6312 0 22 0 0 0 chr21 2627804 2627826 -32279744 + AT_rich Low_complexity Low_complexity 1 22 0 339 319 88 0 chr21 2627841 2627954 -32279616 - L2 LINE L2 -9 3263 3141 405 272 19 38 chr21 2629733 2629891 -32277679 + LTR16A LTR ERVL 220 374 -76 2228 140 20 43 chr21 2629923 2630322 -32277248 + MLT1B LTR MaLR 1 390 0 33 43 0 0 chr21 2630456 2630503 -32277067 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr21 2630889 2630911 -32276659 + AT_rich Low_complexity Low_complexity 1 22 0 183 297 139 77 chr21 2632373 2632582 -32274988 - L2 LINE L2 -107 3165 2944 218 342 38 13 chr21 2633070 2633149 -32274421 + L2 LINE L2 3184 3264 -8 29 0 0 0 chr21 2634349 2634378 -32273192 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 2634655 2634685 -32272885 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr21 2635633 2635656 -32271914 + AT_rich Low_complexity Low_complexity 1 23 0 225 301 12 60 chr21 2636533 2636616 -32270954 + L2 LINE L2 3235 3313 0 732 333 64 6 chr21 2637648 2637990 -32269580 + MER115 DNA AcHobo 332 693 0 2755 189 22 15 chr21 2638254 2638800 -32268770 - MER44D DNA MER2_type 0 605 1 2571 34 0 3 chr21 2639307 2639602 -32267968 - AluY SINE Alu -17 294 1 198 317 156 60 chr21 2639689 2639856 -32267714 - MIR SINE MIR -69 193 11 34 24 0 0 chr21 2640123 2640164 -32267406 + AT_rich Low_complexity Low_complexity 1 41 0 442 260 44 55 chr21 2640531 2640712 -32266858 + MIR SINE MIR 77 255 -7 787 116 18 24 chr21 2641688 2641852 -32265718 + GA-rich Low_complexity Low_complexity 4 166 0 2167 122 3 0 chr21 2642057 2642353 -32265217 + AluSx SINE Alu 1 297 -15 2418 274 62 26 chr21 2642637 2643767 -32263803 + L2 LINE L2 2138 3313 0 22 70 0 0 chr21 2644208 2644251 -32263319 + AT_rich Low_complexity Low_complexity 1 43 0 607 219 8 8 chr21 2644278 2644462 -32263108 + FLAM_A SINE Alu 1 184 0 345 100 0 0 chr21 2644465 2644515 -32263055 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 28352 113 15 12 chr21 2644527 2649973 -32257597 + L1P3 LINE L1 7 5476 -985 234 0 0 0 chr21 2649980 2650006 -32257564 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 783 136 28 11 chr21 2650007 2650183 -32257387 + GA-rich Low_complexity Low_complexity 1 179 0 1897 155 0 0 chr21 2650548 2650826 -32256744 + AluSx SINE Alu 1 278 -34 221 130 14 58 chr21 2652416 2652485 -32255085 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 256 148 33 0 chr21 2652597 2652658 -32254912 + CT-rich Low_complexity Low_complexity 5 67 0 710 278 70 25 chr21 2652893 2653249 -32254321 - L2 LINE L2 -1001 2313 1942 210 71 0 0 chr21 2653420 2653448 -32254122 + (TTG)n Simple_repeat Simple_repeat 2 29 0 380 275 22 0 chr21 2654039 2654130 -32253440 + MER81 DNA DNA 20 112 -2 194 323 21 11 chr21 2655201 2655294 -32252276 - MIR SINE MIR -68 140 47 284 254 56 0 chr21 2655884 2655955 -32251615 - MIR SINE MIR -71 191 117 363 265 0 12 chr21 2657100 2657183 -32250387 + MIR3 SINE MIR 113 194 -14 356 218 0 0 chr21 2657467 2657545 -32250025 + MER116 DNA Mariner 3 80 0 397 253 0 0 chr21 2657939 2658022 -32249548 - MER103 DNA DNA -78 88 6 26 30 0 0 chr21 2659227 2659260 -32248310 + AT_rich Low_complexity Low_complexity 1 33 0 257 254 151 30 chr21 2660631 2660863 -32246707 + HAL1 LINE L1 995 1254 -1253 2377 90 0 0 chr21 2660902 2661212 -32246358 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 2661692 2661715 -32245855 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 253 340 62 19 chr21 2661825 2661987 -32245583 - MLT1K LTR MaLR -46 542 374 2317 80 3 0 chr21 2663283 2663572 -32243998 + AluSp SINE Alu 1 290 -23 278 105 0 0 chr21 2663572 2663610 -32243960 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 593 141 39 19 chr21 2663610 2663766 -32243804 + GA-rich Low_complexity Low_complexity 1 159 0 1245 206 35 16 chr21 2663924 2664240 -32243330 - MER33 DNA MER1_type -1 323 2 1818 138 46 3 chr21 2664801 2665083 -32242487 + AluSg SINE Alu 1 294 -16 394 270 9 0 chr21 2666217 2666328 -32241242 - LTR16B LTR ERVL -352 112 1 21 0 0 0 chr21 2667290 2667311 -32240259 + AT_rich Low_complexity Low_complexity 1 21 0 267 294 118 8 chr21 2667942 2668061 -32239509 + MIR3 SINE MIR 30 161 -47 416 279 27 9 chr21 2668093 2668204 -32239366 + MER5A DNA MER1_type 77 189 0 358 328 34 6 chr21 2668545 2668722 -32238848 + Charlie8 DNA MER1_type 100 281 -2136 27 29 0 0 chr21 2668794 2668828 -32238742 + AT_rich Low_complexity Low_complexity 1 34 0 1881 144 7 17 chr21 2669018 2669317 -32238253 - AluSx SINE Alu -16 296 1 1698 197 32 91 chr21 2669351 2669442 -32238128 - MLT1C LTR MaLR -3 464 369 186 43 0 0 chr21 2669442 2669465 -32238105 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1421 156 3 122 chr21 2669467 2669662 -32237908 - AluJo SINE Alu -19 283 139 230 0 33 0 chr21 2669662 2669692 -32237878 + (TA)n Simple_repeat Simple_repeat 2 32 0 1421 156 3 122 chr21 2669692 2669817 -32237753 - AluJo SINE Alu -163 139 1 1698 197 32 91 chr21 2669817 2670215 -32237355 - MLT1C LTR MaLR -99 368 1 22 35 0 0 chr21 2670642 2670671 -32236899 + AT_rich Low_complexity Low_complexity 1 29 0 371 167 60 0 chr21 2671912 2671996 -32235574 - MER46C DNA MER2_type -11 327 239 447 270 15 0 chr21 2672033 2672170 -32235400 - MER46C DNA MER2_type -176 162 24 23 54 0 0 chr21 2672622 2672659 -32234911 + AT_rich Low_complexity Low_complexity 1 37 0 1424 200 70 0 chr21 2672820 2672916 -32234654 + AluJo SINE Alu 22 110 -202 615 14 0 0 chr21 2672916 2672988 -32234582 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 1424 200 70 0 chr21 2672988 2673161 -32234409 + AluJo SINE Alu 110 310 -2 24 77 0 0 chr21 2673329 2673381 -32234189 + AT_rich Low_complexity Low_complexity 1 52 0 21 82 0 0 chr21 2674243 2674292 -32233278 + AT_rich Low_complexity Low_complexity 1 49 0 326 231 134 15 chr21 2674612 2674746 -32232824 + L2 LINE L2 1932 2081 -1233 325 262 126 10 chr21 2675001 2675104 -32232466 + L2 LINE L2 3199 3313 0 354 315 27 27 chr21 2675783 2675967 -32231603 + L1ME4a LINE L1 5750 5933 -188 2219 112 0 0 chr21 2677511 2677806 -32229764 + AluSx SINE Alu 3 297 -15 514 320 64 30 chr21 2679052 2679378 -32228192 + L2 LINE L2 2794 3138 -175 204 208 62 104 chr21 2679438 2679534 -32228036 + L2 LINE L2 3149 3240 -73 24 0 0 0 chr21 2679670 2679694 -32227876 + AT_rich Low_complexity Low_complexity 1 24 0 2250 78 0 0 chr21 2680583 2680908 -32226662 - AluSq SINE Alu 0 325 1 1348 199 16 51 chr21 2681327 2681638 -32225932 + AluJo SINE Alu 1 300 -12 24 77 0 0 chr21 2681735 2681787 -32225783 + AT_rich Low_complexity Low_complexity 1 52 0 1048 233 75 49 chr21 2682397 2682783 -32224787 + L1ME3A LINE L1 5751 6146 -24 21 57 0 0 chr21 2682874 2682909 -32224661 + AT_rich Low_complexity Low_complexity 1 35 0 247 281 74 37 chr21 2683182 2683317 -32224253 - MIR SINE MIR -15 247 108 378 149 0 15 chr21 2683538 2683605 -32223965 - MER116 DNA Mariner 0 80 15 413 287 8 8 chr21 2683859 2683981 -32223589 + MIR SINE MIR 141 262 0 2126 133 0 0 chr21 2684050 2684343 -32223227 - AluSx SINE Alu -17 295 3 1844 112 89 0 chr21 2684351 2684620 -32222950 - AluY SINE Alu -14 297 5 506 209 9 9 chr21 2685620 2685735 -32221835 - L1MEc LINE L1 -6246 150 36 522 297 79 55 chr21 2685846 2686263 -32221307 - MLT1J LTR MaLR -84 427 1 226 135 58 0 chr21 2686454 2686506 -32221064 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 1961 131 7 0 chr21 2686823 2687105 -32220465 + AluSx SINE Alu 1 284 -28 644 272 61 35 chr21 2687413 2687641 -32219929 + MIR SINE MIR 12 245 -17 501 238 56 12 chr21 2687779 2687939 -32219631 - MLT1E LTR MaLR -128 414 248 513 248 55 88 chr21 2687994 2688232 -32219338 - MLT1E LTR MaLR -312 230 1 220 209 0 0 chr21 2691979 2692022 -32215548 + (TATG)n Simple_repeat Simple_repeat 2 44 0 803 164 0 0 chr21 2692114 2692236 -32215334 + FLAM_C SINE Alu 2 123 -20 25 0 0 0 chr21 2692242 2692267 -32215303 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 2692330 2692351 -32215219 + AT_rich Low_complexity Low_complexity 1 21 0 1071 68 0 0 chr21 2693165 2693297 -32214273 - AluY SINE Alu -179 132 1 2117 50 0 8 chr21 2693840 2694101 -32213469 + AluY SINE Alu 46 304 -7 566 323 41 41 chr21 2694332 2694623 -32212947 + L2 LINE L2 2861 3151 -162 1083 239 5 5 chr21 2694630 2694843 -32212727 + MER20 DNA MER1_type 1 213 -6 192 295 0 39 chr21 2694852 2694930 -32212640 + L2 LINE L2 3158 3232 -81 1988 160 48 34 chr21 2695196 2695738 -32211832 + MLT2A2 LTR ERVL 3 554 0 224 228 0 0 chr21 2696095 2696152 -32211418 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2223 120 0 0 chr21 2696284 2696583 -32210987 - AluSg SINE Alu -11 299 1 1462 108 25 0 chr21 2697489 2697693 -32209877 + AluSg/x SINE Alu 89 297 -13 24 32 0 0 chr21 2698102 2698133 -32209437 + AT_rich Low_complexity Low_complexity 1 31 0 398 278 100 0 chr21 2698185 2698365 -32209205 + L1ME LINE L1 5507 5704 -417 369 326 105 11 chr21 2698577 2698758 -32208812 + MLT1L LTR MaLR 350 547 -68 216 238 298 0 chr21 2699903 2699987 -32207583 + L2 LINE L2 3196 3304 -9 198 118 0 0 chr21 2701576 2701610 -32205960 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 247 239 57 57 chr21 2702293 2702381 -32205189 + MLT1L LTR MaLR 1 88 -527 1307 238 99 31 chr21 2702438 2702955 -32204615 - MLT1E2 LTR MaLR 0 626 52 479 242 42 124 chr21 2703305 2703636 -32203934 - L1MC5 LINE L1 -974 6987 6684 617 237 0 0 chr21 2703856 2703991 -32203579 + FLAM_A SINE Alu 8 142 0 24 53 0 0 chr21 2704120 2704158 -32203412 + AT_rich Low_complexity Low_complexity 1 38 0 1923 219 19 17 chr21 2704558 2705023 -32202547 + MLT1C LTR MaLR 1 466 -1 1122 251 79 32 chr21 2705518 2706280 -32201290 + L1M4 LINE L1 4958 5769 -415 1190 261 80 27 chr21 2706312 2706725 -32200845 + L1ME1 LINE L1 5661 6095 -71 300 221 13 0 chr21 2706765 2706842 -32200728 + L1ME1 LINE L1 6084 6161 -5 1177 248 40 10 chr21 2707256 2707652 -32199918 - L1M3d LINE L1 -3218 2997 2590 324 0 0 0 chr21 2707662 2707698 -32199872 + (TG)n Simple_repeat Simple_repeat 1 36 0 337 227 0 0 chr21 2707737 2707803 -32199767 - L1M3d LINE L1 -3734 2481 2416 459 206 113 0 chr21 2707827 2707924 -32199646 - MER96 DNA MER1_type? -41 134 27 405 223 26 136 chr21 2707990 2708108 -32199462 - L1M3d LINE L1 -3794 2421 2348 1186 176 14 9 chr21 2708108 2708324 -32199246 + L1PB4 LINE L1 5928 6144 -12 405 223 26 136 chr21 2708324 2708478 -32199092 - L1M3d LINE L1 -3867 2348 2179 2139 65 76 7 chr21 2708786 2709077 -32198493 - AluY SINE Alu 0 311 1 26 88 0 0 chr21 2709137 2709205 -32198365 + AT_rich Low_complexity Low_complexity 1 68 0 410 266 97 52 chr21 2709224 2709981 -32197589 - L1M3d LINE L1 -4516 1620 1007 225 382 20 0 chr21 2710800 2710902 -32196668 + MER117 DNA MER1_type 45 148 -49 649 210 18 59 chr21 2712034 2712248 -32195322 - MLT1B LTR MaLR 0 390 173 189 94 0 0 chr21 2712264 2712296 -32195274 + (TG)n Simple_repeat Simple_repeat 2 33 0 639 232 37 6 chr21 2712331 2712495 -32195075 - MLT1B LTR MaLR -221 169 1 208 137 98 0 chr21 2713645 2713696 -32193874 + CT-rich Low_complexity Low_complexity 1 56 0 270 302 0 23 chr21 2713723 2713809 -32193761 - L2 LINE L2 -55 3217 3134 531 294 62 28 chr21 2714452 2714663 -32192907 - L1MC4a LINE L1 -1876 5932 5715 38 51 0 0 chr21 2714995 2715054 -32192516 + AT_rich Low_complexity Low_complexity 1 59 0 827 268 87 11 chr21 2715481 2715746 -32191824 - MLT2F LTR ERVL -233 430 146 529 303 80 17 chr21 2715915 2716215 -32191355 - L1ME3 LINE L1 -313 5849 5531 2688 124 70 0 chr21 2716218 2716687 -32190883 - L1MA4 LINE L1 -6 6294 5793 2893 129 13 6 chr21 2716687 2717204 -32190366 + L1M1 LINE L1 5203 5723 -580 391 312 76 22 chr21 2717192 2717468 -32190102 - L1ME3 LINE L1 -621 5545 5255 254 332 62 9 chr21 2717660 2717871 -32189699 - L1ME3 LINE L1 -1127 5019 4798 25 0 0 0 chr21 2717887 2717912 -32189658 + AT_rich Low_complexity Low_complexity 1 25 0 1430 155 43 75 chr21 2720886 2721208 -32186362 - AluJb SINE Alu 0 312 1 39 38 0 0 chr21 2721804 2721857 -32185713 + AT_rich Low_complexity Low_complexity 1 53 0 703 186 0 0 chr21 2721857 2721975 -32185595 - AluJb SINE Alu -194 118 1 23 33 0 0 chr21 2722092 2722122 -32185448 + AT_rich Low_complexity Low_complexity 1 30 0 321 319 74 0 chr21 2722517 2722652 -32184918 - MIR SINE MIR -44 218 74 4755 125 13 34 chr21 2723487 2723602 -32183968 - L1MA3 LINE L1 0 6305 6189 2105 128 103 30 chr21 2723602 2723999 -32183571 + MSTB LTR MaLR 1 426 0 4755 125 13 34 chr21 2723999 2724709 -32182861 - L1MA3 LINE L1 -116 6189 5497 2075 139 10 3 chr21 2724680 2725161 -32182409 - L1MA3 LINE L1 -741 5564 5084 863 131 103 40 chr21 2725161 2725274 -32182296 + MSTA LTR MaLR 243 347 -81 185 0 40 0 chr21 2725274 2725299 -32182271 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7217 10 0 13 chr21 2725299 2726121 -32181449 - L1PA3 LINE L1 -7 6148 5328 863 131 103 40 chr21 2726121 2726181 -32181389 + MSTA LTR MaLR 346 428 0 4878 158 26 2 chr21 2726213 2727144 -32180426 - L1MA3 LINE L1 -1071 5075 4123 5512 141 13 4 chr21 2727326 2727463 -32180107 - L1PA15 LINE L1 0 6165 6031 192 40 0 0 chr21 2727463 2727488 -32180082 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5512 141 13 4 chr21 2727488 2729017 -32178553 - L1PA15 LINE L1 -134 6031 4486 2870 201 36 8 chr21 2729020 2729627 -32177943 - L1PA15 LINE L1 -1752 4394 3771 24 0 0 0 chr21 2731254 2731278 -32176292 + AT_rich Low_complexity Low_complexity 1 24 0 2029 147 0 0 chr21 2731285 2731571 -32175999 - AluSx SINE Alu -26 286 1 1301 194 24 76 chr21 2732007 2732348 -32175222 + MLT1B LTR MaLR 12 334 -56 295 327 82 80 chr21 2732383 2732909 -32174661 + L1MEd LINE L1 80 606 -5513 24 0 0 0 chr21 2733239 2733263 -32174307 + AT_rich Low_complexity Low_complexity 1 24 0 346 180 0 0 chr21 2733267 2733328 -32174242 + MSTB2 LTR MaLR 397 457 0 651 224 57 29 chr21 2733328 2733538 -32174032 + L1ME3 LINE L1 5939 6154 -8 2648 303 55 45 chr21 2733598 2736076 -32171494 + L1M2a LINE L1 -781 1584 -4729 1031 185 0 0 chr21 2736076 2736254 -32171316 + MER46A DNA MER2_type 1 178 -58 334 118 20 0 chr21 2736324 2736375 -32171195 + MER46A DNA MER2_type 185 236 0 850 188 78 16 chr21 2736375 2736655 -32170915 + L1M2a LINE L1 1185 1781 -4532 1213 253 58 5 chr21 2736682 2737081 -32170489 + L1M2a LINE L1 1819 2238 -4145 19787 169 19 21 chr21 2737057 2742800 -32164770 + L1MA1 LINE L1 22 5749 -1972 1602 183 7 33 chr21 2742800 2742981 -32164589 - AluJb SINE Alu -14 298 127 437 0 19 0 chr21 2742981 2743034 -32164536 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1602 183 7 33 chr21 2743034 2743158 -32164412 - AluJb SINE Alu -185 127 1 19787 169 19 21 chr21 2743158 2745124 -32162446 + L1MA1 LINE L1 5749 7717 -4 6795 229 35 25 chr21 2745128 2746318 -32161252 + L1MA9 LINE L1 3052 4228 -3337 1839 188 35 14 chr21 2746318 2746685 -32160885 - THE1C LTR MaLR 0 375 1 6795 229 35 25 chr21 2746685 2746887 -32160683 + L1MA9 LINE L1 4228 4426 -3139 2109 99 10 23 chr21 2746887 2747191 -32160379 + AluSc SINE Alu 1 300 -9 6795 229 35 25 chr21 2747191 2748224 -32159346 + L1MA9 LINE L1 4426 5690 -1875 201 39 0 0 chr21 2748224 2748250 -32159320 + (CA)n Simple_repeat Simple_repeat 2 27 0 6795 229 35 25 chr21 2748250 2748564 -32159006 + L1MA9 LINE L1 5690 5999 -1566 1037 171 11 30 chr21 2748568 2748872 -32158698 + MER2 DNA MER2_type 9 343 -1 3701 182 21 44 chr21 2748872 2750362 -32157208 + L1MA9 LINE L1 5992 7444 -287 1588 171 11 82 chr21 2750372 2750728 -32156842 + MLT1B LTR MaLR 55 385 -5 4577 176 56 37 chr21 2751329 2752341 -32155229 + L1MC3 LINE L1 6754 7785 0 1026 98 0 0 chr21 2752617 2752749 -32154821 - AluY SINE Alu -179 132 1 485 178 44 15 chr21 2752926 2753061 -32154509 - Charlie7 DNA MER1_type 0 2612 2474 317 242 118 50 chr21 2753171 2753332 -32154238 - MLT1H LTR MaLR -5 544 373 570 122 0 0 chr21 2753412 2753510 -32154060 + (TG)n Simple_repeat Simple_repeat 2 99 0 480 269 70 13 chr21 2753608 2753764 -32153806 - MLT1F1 LTR MaLR -399 168 4 327 105 0 0 chr21 2754085 2754142 -32153428 + (T)n Simple_repeat Simple_repeat 1 57 0 541 131 33 6 chr21 2754301 2754547 -32153023 + AluSx SINE Alu 1 301 -8 2344 61 3 10 chr21 2756917 2757211 -32150359 - AluY SINE Alu -17 294 3 319 301 50 20 chr21 2757262 2757461 -32150109 - L1M4 LINE L1 -1175 4971 4767 530 307 40 16 chr21 2757686 2757937 -32149633 - L1M4 LINE L1 -1712 4434 4178 2021 127 0 7 chr21 2758113 2758423 -32149147 - AluSx SINE Alu 0 310 3 23 54 0 0 chr21 2758428 2758465 -32149105 + AT_rich Low_complexity Low_complexity 1 37 0 210 216 69 78 chr21 2760164 2760266 -32147304 - MIR SINE MIR -50 212 112 21 0 0 0 chr21 2760607 2760628 -32146942 + AT_rich Low_complexity Low_complexity 1 21 0 477 169 0 0 chr21 2760891 2760968 -32146602 - AluJ/FLAM SINE Alu -235 77 1 397 325 152 26 chr21 2762634 2763016 -32144554 + L2 LINE L2 2472 2901 -413 314 24 0 24 chr21 2763747 2763788 -32143782 + L1M1 LINE L1 5664 5703 -599 350 299 39 16 chr21 2763816 2763943 -32143627 + L2 LINE L2 3181 3310 -3 332 271 12 35 chr21 2763944 2764029 -32143541 - MIR SINE MIR -158 104 22 23 33 0 0 chr21 2765546 2765576 -32141994 + AT_rich Low_complexity Low_complexity 1 30 0 2112 169 38 6 chr21 2765608 2765974 -32141596 - MLT1B LTR MaLR -8 382 5 281 295 9 45 chr21 2766416 2766528 -32141042 - MIR SINE MIR -65 197 90 2383 99 0 3 chr21 2766808 2767121 -32140449 - AluSp SINE Alu -1 312 1 480 246 20 56 chr21 2767382 2767577 -32139993 - MER112 DNA MER1_type -35 225 38 695 296 39 30 chr21 2768368 2768571 -32138999 + MIR SINE MIR 8 212 -50 1579 301 43 16 chr21 2768593 2769104 -32138466 - MLT1H1 LTR MaLR -30 525 1 21 0 0 0 chr21 2769850 2769871 -32137699 + AT_rich Low_complexity Low_complexity 1 21 0 233 297 62 48 chr21 2770752 2770897 -32136673 + MIR SINE MIR 3 149 -113 364 297 81 48 chr21 2772887 2773255 -32134315 - MLT1I LTR MaLR -1 408 24 443 299 65 36 chr21 2773361 2773842 -32133728 - HAL1 LINE L1 -579 1928 1433 361 272 106 11 chr21 2773884 2774064 -32133506 - HAL1 LINE L1 -1138 1369 1173 1855 311 44 39 chr21 2774083 2775085 -32132485 - HAL1 LINE L1 -1388 1119 113 390 233 42 69 chr21 2775145 2775334 -32132236 - L1MC5 LINE L1 -46 7915 7732 38 0 0 0 chr21 2776524 2776562 -32131008 + AT_rich Low_complexity Low_complexity 1 38 0 1980 243 58 55 chr21 2776754 2777506 -32130064 + L1ME3A LINE L1 5411 6165 -5 189 282 0 0 chr21 2777773 2777812 -32129758 - MIR SINE MIR -133 75 37 5357 114 51 34 chr21 2777983 2778871 -32128699 + MER4D LTR ERV1 1 903 0 279 0 0 0 chr21 2779676 2779707 -32127863 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2947 171 19 76 chr21 2779864 2780597 -32126973 - LTR8 LTR ERV1 0 691 1 234 320 0 25 chr21 2781303 2781425 -32126145 + (TA)n Simple_repeat Simple_repeat 1 119 0 449 262 74 8 chr21 2782480 2782602 -32124968 + MER5B DNA MER1_type 1 130 -48 6124 95 10 9 chr21 2782608 2783509 -32124061 - L1PA12 LINE L1 0 6168 5267 266 245 0 0 chr21 2783595 2783648 -32123922 - MER5B DNA MER1_type 0 178 126 422 175 0 0 chr21 2783725 2783805 -32123765 - L1MB7 LINE L1 -8 6176 6097 453 239 0 9 chr21 2783869 2783978 -32123592 - L1M4 LINE L1 -2027 4617 4510 2929 248 40 55 chr21 2783971 2784956 -32122614 - L1M4 LINE L1 -5557 985 16 357 372 91 26 chr21 2785037 2785456 -32122114 - L2 LINE L2 -1157 2157 1712 388 272 45 78 chr21 2785680 2785869 -32121701 + MIR SINE MIR 7 199 -63 335 364 45 0 chr21 2785892 2786024 -32121546 + MIR3 SINE MIR 60 197 -11 325 333 50 30 chr21 2788224 2788422 -32119148 + MIR3 SINE MIR 4 205 -3 33 0 0 0 chr21 2790183 2790216 -32117354 + AT_rich Low_complexity Low_complexity 1 33 0 739 191 53 33 chr21 2792068 2792220 -32115350 + MER45A DNA AcHobo 1 155 -23 263 120 40 40 chr21 2792817 2792892 -32114678 + (TTAA)n Simple_repeat Simple_repeat 2 76 0 1157 102 11 11 chr21 2793504 2793519 -32114051 + (GAAA)n Simple_repeat Simple_repeat 3 16 -337 2145 84 3 21 chr21 2793519 2793805 -32113765 + AluSp SINE Alu 1 281 -32 1157 102 11 11 chr21 2793805 2794141 -32113429 + (GAAA)n Simple_repeat Simple_repeat 16 353 0 1365 236 62 44 chr21 2794291 2794787 -32112783 - MLT1D LTR MaLR 0 505 1 246 174 0 0 chr21 2796464 2796510 -32111060 + CT-rich Low_complexity Low_complexity 5 50 0 1647 78 0 23 chr21 2796648 2796865 -32110705 + AluSg SINE Alu 1 212 -98 272 100 0 0 chr21 2796865 2796905 -32110665 + AluSg SINE Alu 263 302 -6 391 274 75 70 chr21 2796951 2797152 -32110418 - LTR33 LTR ERVL -16 505 304 871 74 0 0 chr21 2797486 2797594 -32109976 - AluSq/x SINE Alu -205 108 1 2174 123 3 3 chr21 2798956 2799266 -32108304 + AluSx SINE Alu 1 310 -2 202 234 94 26 chr21 2799586 2799712 -32107858 - MIR SINE MIR -14 248 83 446 326 82 73 chr21 2801812 2802152 -32105418 - L2 LINE L2 -12 3260 2918 243 370 114 40 chr21 2802381 2802776 -32104794 - L2 LINE L2 -645 2669 2246 28 0 0 0 chr21 2803372 2803400 -32104170 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr21 2805002 2805027 -32102543 + AT_rich Low_complexity Low_complexity 1 25 0 647 217 25 6 chr21 2805134 2805291 -32102279 + MER105 DNA DNA 44 203 -1 21 0 0 0 chr21 2807881 2807902 -32099668 + AT_rich Low_complexity Low_complexity 1 21 0 784 109 9 0 chr21 2808824 2808934 -32098636 + MER34 LTR ERV1 1 111 -431 780 146 0 58 chr21 2808935 2809072 -32098498 - FLAM_C SINE Alu -12 131 3 2572 153 23 0 chr21 2809072 2809504 -32098066 + MER34 LTR ERV1 101 542 0 428 321 72 34 chr21 2809553 2809874 -32097696 - L1ME4a LINE L1 -190 5931 5599 219 36 0 0 chr21 2810779 2810807 -32096763 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 351 0 0 0 chr21 2811242 2811281 -32096289 + (CA)n Simple_repeat Simple_repeat 2 40 0 5586 62 4 0 chr21 2811675 2812387 -32095183 + L1PA7 LINE L1 5440 6154 0 186 43 0 0 chr21 2813553 2813576 -32093994 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 191 240 115 39 chr21 2813955 2814059 -32093511 + MIR SINE MIR 40 151 -111 250 235 153 12 chr21 2814764 2814849 -32092721 + MIR SINE MIR 49 145 -117 208 229 0 14 chr21 2814957 2814981 -32092589 + (TTA)n Simple_repeat Simple_repeat 2 25 -45 1981 127 11 0 chr21 2814981 2815264 -32092306 + AluSx SINE Alu 2 287 -25 208 229 0 14 chr21 2815264 2815309 -32092261 + (TTA)n Simple_repeat Simple_repeat 25 70 0 205 205 0 0 chr21 2817156 2817195 -32090375 + A-rich Low_complexity Low_complexity 1 39 0 1222 153 165 54 chr21 2818557 2818818 -32088752 + AluJo SINE Alu 1 290 -12 1062 217 87 55 chr21 2820724 2821256 -32086314 + MLT1E1 LTR MaLR 68 626 0 573 264 43 24 chr21 2821364 2821572 -32085998 + L1PB1 LINE L1 6 217 -6646 14512 194 25 8 chr21 2821548 2826515 -32081055 + L1PB1 LINE L1 1392 6501 -366 2162 88 48 0 chr21 2826515 2826843 -32080727 + AluSc SINE Alu 1 342 0 2320 121 32 8 chr21 2826843 2827215 -32080355 + L1PB1 LINE L1 6485 6865 -2 2625 42 7 0 chr21 2827525 2827832 -32079738 + AluY SINE Alu 1 309 -2 629 327 52 57 chr21 2831039 2831169 -32076401 - L2 LINE L2 0 3313 3184 246 81 0 0 chr21 2831169 2831206 -32076364 + (TG)n Simple_repeat Simple_repeat 2 38 0 629 327 52 57 chr21 2831206 2831603 -32075967 - L2 LINE L2 -129 3184 2791 550 210 17 0 chr21 2831605 2831724 -32075846 + LTR16B LTR ERVL 1 121 -343 1341 331 73 46 chr21 2832055 2832336 -32075234 - L2 LINE L2 -593 2721 2449 24 32 0 0 chr21 2832336 2832367 -32075203 + AT_rich Low_complexity Low_complexity 1 31 0 1341 331 73 46 chr21 2832367 2832930 -32074640 - L2 LINE L2 -865 2449 1823 2727 187 46 23 chr21 2833011 2834008 -32073562 + L1MB7 LINE L1 4836 5854 -330 2092 113 7 0 chr21 2834057 2834357 -32073213 - AluSx SINE Alu -9 303 2 21 95 0 0 chr21 2835467 2835530 -32072040 + AT_rich Low_complexity Low_complexity 1 63 0 409 175 0 6 chr21 2835585 2835702 -32071868 + MER5A DNA MER1_type 1 189 0 608 276 164 33 chr21 2835759 2836089 -32071481 + L2 LINE L2 2936 3308 -5 24 0 0 0 chr21 2837336 2837360 -32070210 + AT_rich Low_complexity Low_complexity 1 24 0 218 206 32 16 chr21 2838031 2838094 -32069476 + (TA)n Simple_repeat Simple_repeat 1 64 0 2392 154 13 10 chr21 2838250 2838640 -32068930 + MER61B LTR ERV1 1 391 -34 32 0 0 0 chr21 2839138 2839170 -32068400 + AT_rich Low_complexity Low_complexity 1 32 0 1350 88 16 5 chr21 2839359 2839553 -32068017 + L1PA10 LINE L1 5973 6168 0 2573 190 43 38 chr21 2840190 2840791 -32066779 - MER6A DNA MER2_type 0 605 2 1079 249 64 17 chr21 2842184 2842530 -32065040 + L1MC5 LINE L1 5545 5906 -1902 1143 226 59 82 chr21 2842534 2843292 -32064278 + L1MC5 LINE L1 6923 7663 -298 368 196 61 54 chr21 2843303 2843451 -32064119 + L1MC5 LINE L1 7769 7917 -44 1878 129 0 11 chr21 2843526 2843835 -32063735 - AluSx SINE Alu 0 306 1 207 0 0 0 chr21 2845428 2845451 -32062119 + (A)n Simple_repeat Simple_repeat 1 23 0 31 44 0 0 chr21 2845651 2845696 -32061874 + AT_rich Low_complexity Low_complexity 1 45 0 394 304 19 12 chr21 2846516 2846677 -32060893 - MIR SINE MIR -15 247 86 2466 61 0 3 chr21 2847702 2848012 -32059558 + AluY SINE Alu 1 309 -2 300 292 95 0 chr21 2848284 2848421 -32059149 + MER117 DNA MER1_type 7 156 -41 32 43 0 0 chr21 2848631 2848677 -32058893 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr21 2849349 2849372 -32058198 + AT_rich Low_complexity Low_complexity 1 23 0 1701 148 14 41 chr21 2850569 2850884 -32056686 - AluJo SINE Alu 0 307 1 207 0 0 0 chr21 2852112 2852135 -32055435 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1269 39 13 0 chr21 2852184 2852339 -32055231 - AluY SINE Alu -11 300 144 311 380 25 10 chr21 2852384 2852584 -32054986 - MIR SINE MIR -58 204 2 287 130 0 0 chr21 2852844 2852890 -32054680 + MADE1 DNA Mariner 1 46 -34 1589 176 14 88 chr21 2853180 2853601 -32053969 + MLT1B LTR MaLR 1 390 0 529 271 96 32 chr21 2854563 2854751 -32052819 + L2 LINE L2 2531 2730 -584 406 355 61 4 chr21 2854824 2855055 -32052515 + L2 LINE L2 2862 3105 -208 526 271 14 29 chr21 2855289 2855429 -32052141 + MER5B DNA MER1_type 38 175 -3 10577 39 24 0 chr21 2856898 2858949 -32048621 + L1PA5 LINE L1 4078 6151 -3 1152 134 4 100 chr21 2859072 2859311 -32048259 - MER30 DNA MER1_type -13 217 2 299 273 0 0 chr21 2859329 2859395 -32048175 - L2 LINE L2 -1 3312 3247 918 211 29 10 chr21 2859463 2859667 -32047903 + AluJb SINE Alu 87 294 -18 213 87 87 22 chr21 2859667 2859713 -32047857 + GA-rich Low_complexity Low_complexity 1 49 0 1321 159 61 43 chr21 2860320 2860543 -32047027 + AluJo SINE Alu 1 231 -81 207 0 0 0 chr21 2860543 2860566 -32047004 + (TTAGGG)n Simple_repeat Simple_repeat 4 26 0 1321 159 61 43 chr21 2860566 2860619 -32046951 + AluJo SINE Alu 231 282 -30 1812 169 0 3 chr21 2861721 2862016 -32045554 - AluJb SINE Alu -16 296 3 23 33 0 0 chr21 2862313 2862343 -32045227 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 2864329 2864351 -32043219 + AT_rich Low_complexity Low_complexity 1 22 0 2122 104 0 4 chr21 2864381 2864659 -32042911 - AluSg SINE Alu -16 294 18 25 0 0 0 chr21 2865405 2865430 -32042140 + AT_rich Low_complexity Low_complexity 1 25 0 239 277 15 0 chr21 2869488 2869553 -32038017 - MIR SINE MIR -151 111 46 1938 172 8 27 chr21 2869996 2870363 -32037207 + MLT1A1 LTR MaLR 6 365 0 301 246 62 87 chr21 2870647 2870842 -32036728 - HAL1 LINE L1 -89 2418 2229 661 205 43 78 chr21 2871309 2871567 -32036003 - HAL1 LINE L1 -884 1623 1375 219 360 45 9 chr21 2871968 2872079 -32035491 + MIR SINE MIR 132 246 -16 1729 195 10 0 chr21 2872355 2872658 -32034912 - AluJo SINE Alu -1 311 6 255 286 36 0 chr21 2874106 2874190 -32033380 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 258 337 35 6 chr21 2875406 2875578 -32031992 + L2 LINE L2 2829 3005 -267 301 182 61 0 chr21 2875792 2875858 -32031712 + L2 LINE L2 3203 3272 0 1855 144 0 16 chr21 2876063 2876368 -32031202 + AluSx SINE Alu 1 300 -12 1293 207 17 24 chr21 2877178 2877473 -32030097 - AluJo SINE Alu -19 293 1 830 178 100 6 chr21 2877975 2878155 -32029415 + LTR8 LTR ERV1 1 197 -494 541 200 27 9 chr21 2878505 2878615 -32028955 - MLT1C LTR MaLR 0 467 356 1666 196 99 73 chr21 2878599 2879135 -32028435 + LTR8A LTR ERV1 178 727 0 1794 190 29 74 chr21 2879259 2879748 -32027822 + MLT1C LTR MaLR 1 467 0 196 75 25 25 chr21 2880196 2880236 -32027334 + (TA)n Simple_repeat Simple_repeat 1 40 0 2182 93 31 3 chr21 2882680 2882971 -32024599 + AluSx SINE Alu 1 299 -13 2129 134 0 0 chr21 2884213 2884505 -32023065 - AluSx SINE Alu -20 292 1 29 78 0 0 chr21 2885010 2885074 -32022496 + AT_rich Low_complexity Low_complexity 1 64 0 300 259 114 15 chr21 2885407 2885538 -32022032 + MIR SINE MIR 35 178 -84 240 289 124 10 chr21 2885662 2885759 -32021811 - MER5B DNA MER1_type -1 177 70 287 277 60 12 chr21 2886249 2886332 -32021238 - MIR3 SINE MIR -28 180 94 1586 190 10 20 chr21 2886677 2886977 -32020593 + AluJo SINE Alu 1 297 -15 195 314 0 43 chr21 2888331 2888401 -32019169 + L2 LINE L2 2542 2608 -706 29 28 0 0 chr21 2889811 2889847 -32017723 + AT_rich Low_complexity Low_complexity 1 36 0 297 361 37 9 chr21 2889970 2890078 -32017492 - MIR SINE MIR -65 143 33 428 304 21 19 chr21 2890145 2890329 -32017241 + MIR SINE MIR 6 143 -65 189 0 0 0 chr21 2891199 2891220 -32016350 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 216 97 0 0 chr21 2892811 2892842 -32014728 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2167 127 3 0 chr21 2894712 2894892 -32012678 - AluSg SINE Alu -1 309 126 486 49 0 0 chr21 2894892 2894953 -32012617 + (TA)n Simple_repeat Simple_repeat 2 62 0 2167 127 3 0 chr21 2894953 2895080 -32012490 - AluSg SINE Alu -184 126 1 1853 97 8 0 chr21 2896125 2896373 -32011197 + AluSg SINE Alu 56 305 -5 870 143 0 0 chr21 2897316 2897449 -32010121 - FLAM_C SINE Alu 0 133 1 263 357 0 0 chr21 2897569 2897653 -32009917 + L2 LINE L2 3199 3282 -31 334 336 56 8 chr21 2898679 2898804 -32008766 - MIR SINE MIR -112 150 20 511 263 32 45 chr21 2898852 2899008 -32008562 + MIR SINE MIR 1 154 -108 2507 58 0 6 chr21 2899014 2899327 -32008243 - AluY SINE Alu 0 311 1 23 0 0 0 chr21 2900499 2900522 -32007048 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 2903354 2903375 -32004195 + AT_rich Low_complexity Low_complexity 1 21 0 2384 103 0 0 chr21 2903652 2903962 -32003608 + AluSg SINE Alu 1 310 0 554 325 68 34 chr21 2904127 2904478 -32003092 - L2 LINE L2 0 3313 2951 767 307 59 24 chr21 2905013 2905384 -32002186 + L2 LINE L2 1919 2302 -1012 246 32 0 0 chr21 2905414 2905445 -32002125 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 7000 12 27 0 chr21 2905446 2906254 -32001316 - L1PA2 LINE L1 -5 6150 5321 452 300 67 17 chr21 2906853 2907033 -32000537 - MIR3 SINE MIR -1 207 19 248 148 98 0 chr21 2907206 2907267 -32000303 + L1MC4 LINE L1 6644 6710 -1332 1475 181 3 61 chr21 2907940 2908250 -31999320 - AluJo SINE Alu -12 300 9 27 0 0 0 chr21 2908811 2908838 -31998732 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 2909955 2909976 -31997594 + AT_rich Low_complexity Low_complexity 1 21 0 339 263 44 9 chr21 2911924 2912038 -31995532 + (TATATG)n Simple_repeat Simple_repeat 2 119 0 841 181 28 40 chr21 2912428 2912495 -31995075 + MLT1A1 LTR MaLR 1 67 -298 2306 181 24 2 chr21 2912495 2912914 -31994656 - MSTA LTR MaLR 0 428 1 841 181 28 40 chr21 2912914 2913023 -31994547 + MLT1A1 LTR MaLR 67 175 -190 788 155 16 0 chr21 2913031 2913160 -31994410 + MLT1A1 LTR MaLR 235 365 0 320 273 71 10 chr21 2913268 2913367 -31994203 - MIR SINE MIR -71 191 87 2198 231 30 27 chr21 2914089 2914652 -31992918 + MLT1F1 LTR MaLR 3 567 0 523 281 56 82 chr21 2915299 2915691 -31991879 - MLT1J LTR MaLR -19 492 111 1907 151 77 33 chr21 2916770 2916839 -31990731 + MSTB1 LTR MaLR 2 67 -365 1966 146 26 32 chr21 2916839 2917216 -31990354 + THE1C LTR MaLR 1 375 0 1907 151 77 33 chr21 2917216 2917536 -31990034 + MSTB1 LTR MaLR 67 408 -24 239 111 0 0 chr21 2917564 2917600 -31989970 + MSTB1 LTR MaLR 422 457 0 243 241 19 0 chr21 2918540 2918594 -31988976 + GA-rich Low_complexity Low_complexity 1 55 0 417 252 9 17 chr21 2918712 2918827 -31988743 - MIR SINE MIR -121 141 28 256 325 95 16 chr21 2919986 2920112 -31987458 + MIR3 SINE MIR 69 204 -4 318 321 0 0 chr21 2920353 2920434 -31987136 - MIR3 SINE MIR -13 195 115 777 272 34 5 chr21 2921902 2922108 -31985462 + MLT1G1 LTR MaLR 5 216 -379 597 196 30 0 chr21 2922111 2922244 -31985326 + FLAM_A SINE Alu 1 137 -5 971 266 103 36 chr21 2922254 2922678 -31984892 + MLT1G LTR MaLR 157 590 0 2347 50 4 0 chr21 2923483 2923813 -31983757 - AluY SINE Alu 0 333 3 22 56 0 0 chr21 2924024 2924060 -31983510 + AT_rich Low_complexity Low_complexity 1 36 0 26 82 0 0 chr21 2924199 2924260 -31983310 + AT_rich Low_complexity Low_complexity 1 61 0 3894 199 82 4 chr21 2925712 2926476 -31981094 + L1M1 LINE L1 12 835 -6730 21 36 0 0 chr21 2926827 2926855 -31980715 + AT_rich Low_complexity Low_complexity 1 28 0 237 132 0 0 chr21 2926951 2926989 -31980581 + (TA)n Simple_repeat Simple_repeat 2 39 0 4968 155 63 42 chr21 2927383 2928432 -31979138 + MER11C LTR ERVK 1 1071 0 1026 198 6 0 chr21 2928613 2928795 -31978775 - AluJo SINE Alu -24 288 106 2117 102 3 7 chr21 2929628 2929913 -31977657 + AluSc SINE Alu 1 284 -25 384 253 32 32 chr21 2930855 2931009 -31976561 + L1MC5 LINE L1 7075 7228 -733 207 250 0 39 chr21 2931313 2931365 -31976205 + MIR SINE MIR 200 249 -13 23 0 0 0 chr21 2931471 2931494 -31976076 + AT_rich Low_complexity Low_complexity 1 23 0 522 226 13 13 chr21 2931527 2931682 -31975888 + L1MC5 LINE L1 7315 7469 -492 492 244 82 53 chr21 2931721 2932077 -31975493 + L1MC5 LINE L1 7548 7913 -48 225 0 0 0 chr21 2933539 2933564 -31974006 + (A)n Simple_repeat Simple_repeat 1 25 0 301 75 38 0 chr21 2933695 2933748 -31973822 + A-rich Low_complexity Low_complexity 1 55 0 462 143 0 0 chr21 2936326 2936403 -31971167 + (TG)n Simple_repeat Simple_repeat 2 78 0 304 143 0 54 chr21 2937238 2937294 -31970276 - L2 LINE L2 0 3313 3261 1410 224 100 58 chr21 2937294 2937795 -31969775 - MER39 LTR ERV1 0 707 186 1743 150 72 31 chr21 2937867 2938227 -31969343 + THE1C LTR MaLR 1 375 0 41146 66 4 1 chr21 2938850 2944983 -31962587 + L1PA5 LINE L1 3 6152 -2 1345 139 63 0 chr21 2945862 2946114 -31961456 + L1MA5A LINE L1 6024 6291 -6 29 28 0 0 chr21 2946118 2946154 -31961416 + AT_rich Low_complexity Low_complexity 1 36 0 682 225 5 80 chr21 2946521 2946708 -31960862 - MIR SINE MIR -33 229 57 186 71 0 0 chr21 2949096 2949124 -31958446 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1557 111 5 0 chr21 2949150 2949357 -31958213 - AluSg SINE Alu -98 212 5 259 148 16 16 chr21 2949613 2949674 -31957896 + GA-rich Low_complexity Low_complexity 4 64 0 1430 267 111 30 chr21 2950293 2950791 -31956779 - MLT1E LTR MaLR -19 574 36 549 73 0 49 chr21 2950791 2950873 -31956697 + MLT2D LTR ERVL 1 78 -336 180 0 0 0 chr21 2950873 2950893 -31956677 + (TC)n Simple_repeat Simple_repeat 2 21 0 216 67 0 0 chr21 2950893 2950923 -31956647 + (CA)n Simple_repeat Simple_repeat 2 31 0 330 89 0 0 chr21 2950927 2950972 -31956598 + MLT2D LTR ERVL 370 414 0 255 246 18 0 chr21 2951514 2951571 -31955999 - tRNA-Ile-ATT tRNA tRNA -7 70 13 33 43 0 0 chr21 2951712 2951759 -31955811 + AT_rich Low_complexity Low_complexity 1 47 0 6249 95 5 25 chr21 2951764 2953061 -31954509 + L1PA8 LINE L1 4897 6172 0 198 0 0 0 chr21 2953520 2953542 -31954028 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1717 57 70 4 chr21 2953542 2953771 -31953799 - L1PA6 LINE L1 -18 6136 5893 1983 102 3 71 chr21 2954258 2954581 -31952989 + AluY SINE Alu 1 301 -10 397 221 0 35 chr21 2954772 2954858 -31952712 + Charlie5 DNA MER1_type 1 83 -2529 190 0 0 62 chr21 2954858 2954890 -31952680 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 967 182 60 30 chr21 2954934 2955203 -31952367 + Charlie5 DNA MER1_type 2348 2624 0 555 211 50 11 chr21 2955939 2956119 -31951451 - MER33 DNA MER1_type -111 213 27 563 231 41 18 chr21 2956138 2956307 -31951263 - MER58C DNA MER1_type 0 215 43 342 320 9 12 chr21 2956454 2956596 -31950974 - MIR SINE MIR -62 146 13 181 159 0 91 chr21 2956657 2956701 -31950869 - L2 LINE L2 0 3313 3274 2104 196 10 13 chr21 2956914 2957311 -31950259 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr21 2958356 2958378 -31949192 + AT_rich Low_complexity Low_complexity 1 22 0 184 288 137 14 chr21 2959159 2959232 -31948338 + MIR SINE MIR 31 112 -150 2394 157 48 0 chr21 2959497 2959910 -31947660 - Tigger2a DNA MER2_type -1 433 1 411 116 29 14 chr21 2960222 2960291 -31947279 - MER63 DNA MER1_type -314 747 678 21040 159 24 5 chr21 2961297 2964888 -31942682 + L1MA1 LINE L1 16 3675 -3890 8558 26 0 0 chr21 2964894 2965894 -31941676 - L1PA3 LINE L1 -1204 4942 3943 7615 25 0 3 chr21 2965894 2967134 -31940436 + L1PA3 LINE L1 4919 6155 0 13798 176 23 18 chr21 2967168 2967185 -31940385 + L1MA1 LINE L1 3672 3687 -4034 1888 171 0 0 chr21 2967185 2967470 -31940100 + AluSx SINE Alu 1 288 -24 405 0 0 0 chr21 2967470 2967515 -31940055 + (CA)n Simple_repeat Simple_repeat 2 46 0 1888 171 0 0 chr21 2967515 2967528 -31940042 + AluSx SINE Alu 287 299 -13 13798 176 23 18 chr21 2967528 2970891 -31936679 + L1MA1 LINE L1 3687 7068 -653 4169 98 5 2 chr21 2970898 2971497 -31936073 + L1MA1 LINE L1 7117 7717 -4 29 70 0 0 chr21 2971643 2971700 -31935870 + AT_rich Low_complexity Low_complexity 1 57 0 288 130 0 0 chr21 2972548 2972594 -31934976 + (GAAA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr21 2972879 2972908 -31934662 + AT_rich Low_complexity Low_complexity 1 29 0 635 280 87 59 chr21 2973660 2974099 -31933471 + L1M4 LINE L1 4383 4833 -1313 4229 182 23 33 chr21 2976959 2977832 -31929738 - L1MB3 LINE L1 -2 6181 5318 328 87 0 0 chr21 2977842 2977888 -31929682 + Alu SINE Alu 248 293 -7 2149 210 40 21 chr21 2977901 2978473 -31929097 - L1MB3 LINE L1 -836 5310 4728 417 261 36 9 chr21 2978552 2978663 -31928907 - MIR SINE MIR -129 133 20 234 246 16 0 chr21 2978682 2978743 -31928827 + MIR SINE MIR 82 143 -119 32 0 0 0 chr21 2978872 2978904 -31928666 + AT_rich Low_complexity Low_complexity 1 32 0 2617 141 52 12 chr21 2978906 2979402 -31928168 - L1MA8 LINE L1 -4 6287 5772 1039 128 0 0 chr21 2979402 2979551 -31928019 + L1MA8 LINE L1 5624 5772 -519 267 236 0 0 chr21 2979904 2979959 -31927611 - MLT1L LTR MaLR -221 394 340 352 257 63 48 chr21 2980251 2980457 -31927113 - L1MC5 LINE L1 -41 7920 7712 225 333 37 28 chr21 2980535 2980643 -31926927 + MLT1G1 LTR MaLR 73 181 -414 1287 142 8 4 chr21 2980676 2980916 -31926654 - L1MA7 LINE L1 -1 6290 6050 720 229 151 48 chr21 2980921 2981266 -31926304 + MLT1G1 LTR MaLR 178 574 -21 214 208 0 21 chr21 2981325 2981373 -31926197 + GA-rich Low_complexity Low_complexity 2 48 0 2269 94 0 16 chr21 2981804 2982111 -31925459 - AluSg SINE Alu -8 302 1 274 207 11 58 chr21 2982146 2982233 -31925337 - L1MC5 LINE L1 -818 7143 7061 1814 153 52 30 chr21 2982269 2982636 -31924934 - THE1C LTR MaLR 0 375 1 232 294 0 0 chr21 2982676 2982727 -31924843 + polypyrimidine Low_complexity Low_complexity 2 52 0 460 283 62 26 chr21 2982745 2982971 -31924599 - L1MC4 LINE L1 -977 7065 6832 320 298 92 23 chr21 2983655 2983786 -31923784 + MIR SINE MIR 10 149 -113 207 114 0 0 chr21 2984782 2984817 -31922753 + (GA)n Simple_repeat Simple_repeat 2 36 0 450 0 0 0 chr21 2985020 2985070 -31922500 + (TA)n Simple_repeat Simple_repeat 2 51 0 5233 103 4 21 chr21 2985081 2985884 -31921686 - L1P LINE L1 -956 5190 4402 5068 119 12 1 chr21 2985882 2986652 -31920918 + L1P LINE L1 3626 4403 -1743 4168 80 5 7 chr21 2986662 2987235 -31920335 - L1PA7 LINE L1 -2 6152 5581 218 224 60 30 chr21 2987359 2987426 -31920144 + MIR3 SINE MIR 111 179 -29 2336 112 19 25 chr21 2987804 2988170 -31919400 + THE1B LTR MaLR 1 364 0 968 270 75 35 chr21 2988728 2989157 -31918413 - L1ME3 LINE L1 -31 6131 5686 222 150 0 0 chr21 2989195 2989235 -31918335 + (TA)n Simple_repeat Simple_repeat 1 40 0 349 287 0 0 chr21 2989241 2989328 -31918242 - L1MC4 LINE L1 -1342 6700 6614 309 143 0 0 chr21 2989314 2989363 -31918207 - L1MC4 LINE L1 -1339 6703 6655 508 306 135 5 chr21 2989398 2989591 -31917979 - L1ME3 LINE L1 -525 5641 5424 648 317 47 16 chr21 2989594 2990083 -31917487 - L1ME3 LINE L1 -745 5401 4898 278 362 68 18 chr21 2990301 2990464 -31917106 + MIR3 SINE MIR 23 193 -15 268 320 13 0 chr21 2992088 2992163 -31915407 - MIR SINE MIR -91 117 42 270 299 93 0 chr21 2992993 2993100 -31914470 + MIR3 SINE MIR 68 184 -24 391 350 96 39 chr21 2994992 2995452 -31912118 + L2 LINE L2 1634 2119 -1195 352 294 59 0 chr21 2995685 2995804 -31911766 - LTR16C LTR ERVL -3 488 363 368 325 19 13 chr21 2996647 2996801 -31910769 - Tigger8 DNA MER2_type -23 643 489 2210 128 28 11 chr21 2997337 2997695 -31909875 - THE1B LTR MaLR 0 364 1 510 200 144 31 chr21 2997855 2998015 -31909555 + MER5B DNA MER1_type 1 178 0 671 218 30 79 chr21 2998017 2998182 -31909388 + MER5A DNA MER1_type 29 185 -4 2670 80 19 3 chr21 2998983 2999358 -31908212 + L1PA8 LINE L1 5791 6171 -1 26 30 0 0 chr21 2999492 2999525 -31908045 + AT_rich Low_complexity Low_complexity 1 33 0 214 161 0 48 chr21 3000867 3000929 -31906641 + GA-rich Low_complexity Low_complexity 3 61 0 1671 192 72 3 chr21 3000929 3001263 -31906307 + MLT1A1 LTR MaLR 1 357 -8 625 182 11 17 chr21 3001298 3001474 -31906096 + GA-rich Low_complexity Low_complexity 4 178 0 2102 131 0 13 chr21 3001487 3001792 -31905778 - AluSx SINE Alu -11 301 1 1882 106 64 0 chr21 3002426 3002690 -31904880 - AluSq SINE Alu -25 288 8 220 359 51 39 chr21 3002713 3002969 -31904601 + L2 LINE L2 2808 3066 -206 212 305 34 0 chr21 3003120 3003179 -31904391 + L2 LINE L2 3202 3262 -10 2130 101 0 4 chr21 3003710 3003988 -31903582 - AluSc SINE Alu -16 293 17 242 216 0 20 chr21 3004616 3004667 -31902903 + MIR SINE MIR 6 55 -207 301 254 120 49 chr21 3005671 3005813 -31901757 - MER5A DNA MER1_type 0 189 38 2581 103 14 0 chr21 3007053 3007411 -31900159 - THE1B LTR MaLR 0 364 2 189 0 0 0 chr21 3009428 3009449 -31898121 + (CA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr21 3010482 3010506 -31897064 + AT_rich Low_complexity Low_complexity 1 24 0 1645 168 27 20 chr21 3010506 3010804 -31896766 - AluJb SINE Alu -11 301 2 1786 48 0 5 chr21 3010807 3011017 -31896553 - AluY SINE Alu -17 294 86 315 0 0 0 chr21 3011656 3011691 -31895879 + (CA)n Simple_repeat Simple_repeat 2 36 0 1741 112 4 0 chr21 3012214 3012446 -31895124 + AluSq SINE Alu 16 248 -65 404 254 35 26 chr21 3013289 3013403 -31894167 - MIR SINE MIR -95 167 53 554 168 0 0 chr21 3014449 3014542 -31893028 + MLT1A1 LTR MaLR 1 93 -272 392 92 0 0 chr21 3014542 3014604 -31892966 - MLT2A1 LTR ERVL 0 444 336 337 121 64 23 chr21 3014618 3014791 -31892779 + (TA)n Simple_repeat Simple_repeat 1 180 0 198 0 0 0 chr21 3014858 3014880 -31892690 + (TA)n Simple_repeat Simple_repeat 2 23 0 3118 84 0 0 chr21 3014880 3015284 -31892286 - MLT2A1 LTR ERVL -40 404 1 984 234 61 19 chr21 3015284 3015545 -31892025 + MLT1A1 LTR MaLR 89 360 -5 777 277 55 3 chr21 3016132 3016545 -31891025 - MER110 LTR ERV1 0 491 46 365 312 35 21 chr21 3018574 3018718 -31888852 - MER5A DNA MER1_type -1 188 43 243 0 0 0 chr21 3019566 3019593 -31887977 + (TG)n Simple_repeat Simple_repeat 2 28 0 192 111 0 0 chr21 3020222 3020258 -31887312 + (T)n Simple_repeat Simple_repeat 1 36 0 317 260 26 13 chr21 3021093 3021170 -31886400 + MER5A DNA MER1_type 32 109 -80 2269 93 0 6 chr21 3021501 3021812 -31885758 - AluY SINE Alu -2 309 1 1690 216 30 60 chr21 3022287 3022786 -31884784 - MER31A LTR ERV1 -1 484 1 238 355 75 0 chr21 3023562 3023655 -31883915 - L2 LINE L2 -4 3309 3210 1858 135 72 26 chr21 3025336 3025684 -31881886 - THE1B LTR MaLR 0 364 1 301 379 25 17 chr21 3027980 3028215 -31879355 - L3 LINE CR1 -251 1326 1090 2194 74 51 3 chr21 3028285 3028581 -31878989 - AluY SINE Alu -1 310 1 1837 275 50 48 chr21 3030187 3031199 -31876371 + L1MEc LINE L1 1458 2471 -3925 2552 278 38 10 chr21 3031459 3032259 -31875311 - L1ME3A LINE L1 -11 6159 5338 478 282 55 4 chr21 3032290 3032545 -31875025 - L1ME3A LINE L1 -909 5237 4970 953 308 17 38 chr21 3033120 3033412 -31874158 + L1MDb LINE L1 3 288 -6121 325 276 71 126 chr21 3033424 3033678 -31873892 + L1MDb LINE L1 348 587 -5822 4442 218 91 37 chr21 3033679 3035099 -31872471 + L1MDb LINE L1 746 2087 -4319 1784 182 0 19 chr21 3035099 3035417 -31872153 + AluJb SINE Alu 1 312 0 4442 218 91 37 chr21 3035417 3035439 -31872131 + L1MDb LINE L1 2087 2106 -4300 1354 204 25 83 chr21 3035439 3035836 -31871734 - MLT1A2 LTR MaLR 0 374 1 4442 218 91 37 chr21 3035836 3035947 -31871623 + L1MDb LINE L1 2106 2210 -4196 225 0 0 0 chr21 3035947 3035972 -31871598 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4442 218 91 37 chr21 3035972 3036157 -31871413 + L1MDb LINE L1 2210 2564 -3842 195 100 0 0 chr21 3037521 3037551 -31870019 + (CAATT)n Simple_repeat Simple_repeat 4 33 0 220 155 17 17 chr21 3037695 3037753 -31869817 + CT-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr21 3039749 3039770 -31867800 + AT_rich Low_complexity Low_complexity 1 21 0 4521 56 2 2 chr21 3039770 3040338 -31867232 - L1PA8 LINE L1 -9 6163 5596 1555 137 44 0 chr21 3041151 3041377 -31866193 + AluSx SINE Alu 1 236 -76 212 125 42 0 chr21 3041661 3041709 -31865861 + A-rich Low_complexity Low_complexity 4 53 0 2101 118 0 10 chr21 3041818 3042122 -31865448 + AluSc SINE Alu 1 301 -8 452 99 0 0 chr21 3042624 3042695 -31864875 - L1MA3 LINE L1 0 6305 6235 472 186 58 0 chr21 3043011 3043167 -31864403 + (TA)n Simple_repeat Simple_repeat 2 166 0 954 135 0 0 chr21 3043232 3043365 -31864205 + AluJo SINE Alu 2 134 -178 624 197 31 97 chr21 3043410 3043638 -31863932 + L1MC5 LINE L1 6755 6967 -994 690 224 110 26 chr21 3043932 3044178 -31863392 + L1MC5 LINE L1 7603 7876 -85 467 110 41 0 chr21 3044178 3044251 -31863319 - MADE1 DNA Mariner 0 80 5 690 224 110 26 chr21 3044251 3044276 -31863294 + L1MC5 LINE L1 7876 7897 -64 430 250 0 7 chr21 3044295 3044431 -31863139 - LTR37A LTR ERV1 0 426 292 585 236 21 58 chr21 3044538 3044729 -31862841 - LTR37A LTR ERV1 -217 209 26 2291 192 47 16 chr21 3044786 3045276 -31862294 + MLT1D LTR MaLR 1 505 0 1230 284 58 52 chr21 3045648 3046323 -31861247 - MER31-int LTR ERV1 -875 4061 3383 1404 205 31 0 chr21 3046430 3046689 -31860881 + AluJo SINE Alu 1 267 -45 566 219 65 47 chr21 3046706 3046875 -31860695 - MER58A DNA MER1_type -52 172 1 219 293 122 24 chr21 3047367 3047449 -31860121 - MER5B DNA MER1_type -87 91 2 1652 228 52 38 chr21 3047487 3047934 -31859636 - LTR40c LTR ERVL -12 453 1 591 235 39 88 chr21 3048123 3048408 -31859162 - MER31-int LTR ERV1 -1870 3066 2796 2151 139 0 0 chr21 3048613 3048922 -31858648 + AluSx SINE Alu 1 309 -3 2466 72 0 7 chr21 3049222 3049529 -31858041 - AluY SINE Alu -6 305 1 558 216 35 35 chr21 3049639 3049810 -31857760 + Charlie1 DNA MER1_type 2551 2721 -40 1798 168 6 25 chr21 3050062 3050378 -31857192 - AluJo SINE Alu 0 312 3 287 218 61 61 chr21 3050650 3050797 -31856773 - MER31-int LTR ERV1 -3488 1448 1302 2491 76 0 0 chr21 3050979 3051281 -31856289 - AluY SINE Alu -9 302 1 228 227 0 40 chr21 3051879 3051954 -31855616 - LTR37B LTR ERV1 0 468 397 844 189 52 0 chr21 3052161 3052314 -31855256 - MER3 DNA MER1_type -2 207 47 1850 177 85 22 chr21 3052650 3053052 -31854518 + MLT1C LTR MaLR 1 427 -40 899 224 35 51 chr21 3053050 3053362 -31854208 - LTR37A LTR ERV1 -42 384 78 258 169 112 67 chr21 3053801 3053890 -31853680 - MLT1J1 LTR MaLR -8 438 346 349 326 0 0 chr21 3055539 3055674 -31851896 + L1ME3 LINE L1 5732 5866 -296 3521 66 2 0 chr21 3056149 3056601 -31850969 - L1PA7 LINE L1 -12 6142 5690 249 291 63 0 chr21 3056811 3056890 -31850680 + L2 LINE L2 3180 3263 -50 225 225 84 14 chr21 3057662 3057733 -31849837 + MIR SINE MIR 178 253 -9 32 43 0 0 chr21 3057755 3057801 -31849769 + AT_rich Low_complexity Low_complexity 1 46 0 260 313 40 10 chr21 3058219 3058318 -31849252 + MIR SINE MIR 17 118 -90 22 0 0 0 chr21 3058487 3058509 -31849061 + AT_rich Low_complexity Low_complexity 1 22 0 264 219 245 84 chr21 3059065 3059208 -31848362 + MER5A DNA MER1_type 14 178 0 763 228 18 22 chr21 3061370 3061659 -31845911 + L1M4c LINE L1 2041 2322 -4060 375 224 61 30 chr21 3061635 3061800 -31845770 + L1M1 LINE L1 3455 3624 -3941 2115 106 3 3 chr21 3061829 3062145 -31845425 + AluSc SINE Alu 1 316 0 1635 146 175 26 chr21 3062149 3062492 -31845078 - MSTA LTR MaLR -34 394 1 8897 153 30 30 chr21 3062492 3064071 -31843499 - MSTA-int LTR MaLR 0 1580 3 2063 136 121 23 chr21 3064073 3064463 -31843107 - MSTA LTR MaLR 0 428 1 733 271 55 30 chr21 3064711 3064788 -31842782 + MIR SINE MIR 8 82 -180 1682 191 50 19 chr21 3064788 3065166 -31842404 - MLT1B LTR MaLR 0 390 1 733 271 55 30 chr21 3065166 3065324 -31842246 + MIR SINE MIR 82 249 -13 2134 134 3 0 chr21 3065795 3066100 -31841470 + AluSq SINE Alu 1 306 -7 1082 218 32 7 chr21 3066855 3067140 -31840430 + L1MA4 LINE L1 6004 6295 -5 223 240 0 0 chr21 3068122 3068172 -31839398 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 511 364 36 9 chr21 3068826 3069046 -31838524 + L2 LINE L2 2651 2876 -438 298 326 54 38 chr21 3069075 3069314 -31838256 + L2 LINE L2 2940 3182 -131 428 209 18 0 chr21 3069408 3069518 -31838052 + GA-rich Low_complexity Low_complexity 2 113 0 637 321 48 16 chr21 3070841 3071156 -31836414 + L1MB1 LINE L1 189 513 -5800 2809 246 40 21 chr21 3071838 3072915 -31834655 + L1MB1 LINE L1 975 2029 -4353 1934 208 3 3 chr21 3072915 3073280 -31834290 + MLT1A1 LTR MaLR 1 365 0 2809 246 40 21 chr21 3073280 3073303 -31834267 + L1MB1 LINE L1 2029 2050 -4332 22 94 0 0 chr21 3073303 3073367 -31834203 + AT_rich Low_complexity Low_complexity 1 64 0 2809 246 40 21 chr21 3073367 3074530 -31833040 + L1MB1 LINE L1 2050 3215 -3167 2745 200 46 9 chr21 3074525 3074971 -31832599 + L1MB1 LINE L1 4020 4501 -1881 225 65 0 0 chr21 3074971 3075002 -31832568 + (CA)n Simple_repeat Simple_repeat 2 32 0 2745 200 46 9 chr21 3075002 3075225 -31832345 + L1MB1 LINE L1 4501 4714 -1668 204 40 0 0 chr21 3075225 3075250 -31832320 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 121 0 0 chr21 3076657 3076690 -31830880 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3807 181 27 33 chr21 3076915 3078157 -31829413 + L1MB1 LINE L1 4701 5980 -424 2166 75 3 39 chr21 3078157 3078464 -31829106 + AluY SINE Alu 1 296 -15 3807 181 27 33 chr21 3078464 3078887 -31828683 + L1MB1 LINE L1 5980 6404 0 234 299 134 15 chr21 3080448 3080649 -31826921 + L2 LINE L2 1306 1530 -1784 363 250 62 0 chr21 3080708 3080804 -31826766 - L2 LINE L2 -20 3252 3151 279 365 65 0 chr21 3081175 3081375 -31826195 + L2 LINE L2 2082 2294 -1020 578 311 82 17 chr21 3081542 3081835 -31825735 - MLT1J1 LTR MaLR -73 373 62 2310 166 57 5 chr21 3082187 3082590 -31824980 + MSTB LTR MaLR 2 425 -1 25 65 0 0 chr21 3082608 3082654 -31824916 + AT_rich Low_complexity Low_complexity 1 46 0 315 0 0 0 chr21 3083274 3083309 -31824261 + (CA)n Simple_repeat Simple_repeat 2 36 0 570 277 76 72 chr21 3084478 3084897 -31822673 - L2 LINE L2 -63 3250 2830 363 157 0 0 chr21 3086142 3086212 -31821358 + (CA)n Simple_repeat Simple_repeat 2 71 0 2064 136 7 0 chr21 3086367 3086668 -31820902 + AluSq SINE Alu 2 304 -9 238 31 0 0 chr21 3087550 3087582 -31819988 + MADE1 DNA Mariner 49 80 0 334 287 23 11 chr21 3087988 3088075 -31819495 + MER5A DNA MER1_type 2 89 -100 533 233 14 10 chr21 3088131 3088252 -31819318 + MER5A DNA MER1_type 54 189 0 748 192 84 59 chr21 3088608 3088811 -31818759 + MLT1E2 LTR MaLR 1 208 -418 1109 185 16 49 chr21 3088911 3089154 -31818416 + MLT1E2 LTR MaLR 391 625 -1 2127 161 23 8 chr21 3089775 3090159 -31817411 - MLT1B LTR MaLR 0 390 1 613 301 32 0 chr21 3090621 3090807 -31816763 - MIR SINE MIR -11 251 60 822 217 57 12 chr21 3091686 3091930 -31815640 + L1MEc LINE L1 1610 1864 -4532 505 266 109 22 chr21 3093260 3093572 -31813998 + L1MEc LINE L1 1930 2268 -4128 1541 240 44 25 chr21 3093606 3094131 -31813439 + L1MEc LINE L1 2303 2837 -3378 515 153 31 0 chr21 3094167 3094265 -31813305 - L1MB4 LINE L1 -1 6179 6079 323 293 12 60 chr21 3094336 3094503 -31813067 + L1MEc LINE L1 3240 3398 -2817 1290 269 23 52 chr21 3094503 3095229 -31812341 + L1ME1 LINE L1 2892 3596 -2619 661 272 42 39 chr21 3095257 3095588 -31811982 + L1ME1 LINE L1 3863 4194 -2021 473 243 0 29 chr21 3095920 3096056 -31811514 + L1ME1 LINE L1 4517 4648 -1567 1116 123 0 18 chr21 3096060 3096230 -31811340 + THE1C LTR MaLR 1 167 -208 448 125 0 0 chr21 3096231 3096303 -31811267 - Alu SINE Alu -6 305 234 1478 110 28 5 chr21 3096303 3096521 -31811049 + THE1C LTR MaLR 153 375 0 37932 81 10 9 chr21 3096606 3098006 -31809564 + L1PA6 LINE L1 11 1408 -4765 205 29 59 0 chr21 3098006 3098040 -31809530 + (AAATG)n Simple_repeat Simple_repeat 5 40 0 37932 81 10 9 chr21 3098040 3102794 -31804776 + L1PA6 LINE L1 1408 6173 0 1631 230 57 37 chr21 3102908 3103503 -31804067 + L1ME1 LINE L1 4858 5464 -751 2423 227 47 20 chr21 3103534 3104221 -31803349 + L1ME1 LINE L1 5527 6231 -4 249 236 60 126 chr21 3105244 3105426 -31802144 - MLT1I LTR MaLR -19 390 221 485 267 80 27 chr21 3106601 3106751 -31800819 + MLT1F1 LTR MaLR 1 158 -384 2304 91 0 0 chr21 3106761 3107057 -31800513 + AluY SINE Alu 1 296 -15 716 255 39 60 chr21 3107069 3107505 -31800065 + MLT1F1 LTR MaLR 148 624 0 209 57 29 0 chr21 3107671 3107706 -31799864 + (TA)n Simple_repeat Simple_repeat 1 36 0 2328 151 16 3 chr21 3107713 3108078 -31799492 - THE1C LTR MaLR -5 370 1 1723 193 10 13 chr21 3108342 3108653 -31798917 - AluJo SINE Alu -2 310 1 1977 147 0 0 chr21 3109142 3109428 -31798142 - AluSx SINE Alu -24 288 3 1593 171 135 15 chr21 3109655 3109989 -31797581 + MLT1A2 LTR MaLR 1 374 0 919 271 99 43 chr21 3109991 3110363 -31797207 + MSTD LTR MaLR 1 393 -3 214 255 0 0 chr21 3110383 3110430 -31797140 + (ATG)n Simple_repeat Simple_repeat 2 48 0 326 277 69 46 chr21 3110440 3110570 -31797000 - MIR SINE MIR -17 245 113 489 303 85 0 chr21 3111881 3112046 -31795524 - MIR SINE MIR -29 233 55 717 196 94 0 chr21 3112754 3112862 -31794708 + AluJo SINE Alu 12 137 -175 450 0 0 0 chr21 3112862 3112912 -31794658 + (TAA)n Simple_repeat Simple_repeat 2 51 0 717 196 94 0 chr21 3112912 3112941 -31794629 + AluJo SINE Alu 137 162 -150 21 36 0 0 chr21 3113336 3113364 -31794206 + AT_rich Low_complexity Low_complexity 1 28 0 513 288 75 75 chr21 3113365 3113802 -31793768 + L1MEd LINE L1 787 1223 -5149 2669 240 45 31 chr21 3114182 3115968 -31791602 + L1M3 LINE L1 2 1858 -4353 482 253 7 27 chr21 3115966 3116136 -31791434 + L1MEd LINE L1 2351 2517 -3865 436 263 0 0 chr21 3116157 3116256 -31791314 + L1MEd LINE L1 3139 3237 -3145 5946 160 11 19 chr21 3116278 3118162 -31789408 - L1MA2 LINE L1 0 6304 4435 644 161 14 21 chr21 3118210 3118353 -31789217 + L1M3 LINE L1 4316 4457 -1753 35408 49 1 5 chr21 3118350 3123956 -31783614 + L1PA4 LINE L1 555 6155 0 30 0 0 0 chr21 3123985 3124015 -31783555 + AT_rich Low_complexity Low_complexity 1 30 0 3781 187 23 5 chr21 3124022 3124817 -31782753 + L1M3 LINE L1 4462 5270 -940 2098 172 47 15 chr21 3124817 3125223 -31782347 + MSTC LTR MaLR 1 419 -9 963 127 6 105 chr21 3125233 3125486 -31782084 + L1M3 LINE L1 5312 5535 -712 943 115 6 32 chr21 3125486 3125643 -31781927 + LTR19-int LTR ERV1 3445 3597 -1989 2211 47 0 0 chr21 3125643 3125901 -31781669 + AluY SINE Alu 40 297 -14 1965 167 46 28 chr21 3125904 3126299 -31781271 + LTR19-int LTR ERV1 4128 4529 -1417 4413 128 45 36 chr21 3126299 3127133 -31780437 + LTR19-int LTR ERV1 4404 4663 -460 4155 94 23 3 chr21 3127429 3128005 -31779565 + LTR8 LTR ERV1 1 587 -104 5093 161 30 21 chr21 3128013 3129573 -31777997 + L1MA7 LINE L1 4600 6183 -108 2389 62 27 0 chr21 3129573 3129865 -31777705 - AluY SINE Alu -11 300 1 5093 161 30 21 chr21 3129865 3129972 -31777598 + L1MA7 LINE L1 6183 6288 -3 589 194 0 0 chr21 3130040 3130143 -31777427 - Tigger7 DNA MER2_type 0 2487 2385 1434 202 23 4 chr21 3130138 3130400 -31777170 - Tigger7 DNA MER2_type -2220 267 1 877 240 74 15 chr21 3130436 3130847 -31776723 + L1MEc LINE L1 2121 2522 -3693 1234 282 50 3 chr21 3131020 3131403 -31776167 + L1MEc LINE L1 2731 3131 -3084 524 257 9 0 chr21 3131821 3131934 -31775636 + MER81 DNA DNA 1 114 0 210 37 0 0 chr21 3132591 3132618 -31774952 + (CA)n Simple_repeat Simple_repeat 2 28 0 650 164 58 32 chr21 3133793 3133976 -31773594 + L1MB3 LINE L1 5944 6147 -36 750 292 85 4 chr21 3134144 3134380 -31773190 + MIR SINE MIR 3 257 -5 25 83 0 0 chr21 3134708 3134768 -31772802 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr21 3136921 3136943 -31770627 + AT_rich Low_complexity Low_complexity 1 22 0 547 255 107 23 chr21 3137092 3137308 -31770262 + MIR SINE MIR 29 262 0 1336 69 0 6 chr21 3137437 3137610 -31769960 - AluSg/x SINE Alu -3 306 135 180 0 0 0 chr21 3138637 3138657 -31768913 + (A)n Simple_repeat Simple_repeat 1 20 0 2758 16 0 0 chr21 3142344 3142657 -31764913 - L1P1 LINE L1 -478 5677 5365 4476 16 0 0 chr21 3142657 3143201 -31764369 + L1PA2 LINE L1 5642 6190 0 207 288 123 51 chr21 3144251 3144487 -31763083 + L2 LINE L2 2523 2775 -539 202 229 83 0 chr21 3144808 3144856 -31762714 + L2 LINE L2 3261 3312 -1 194 116 23 0 chr21 3145511 3145554 -31762016 + (TA)n Simple_repeat Simple_repeat 1 44 0 2087 115 45 0 chr21 3145608 3145895 -31761675 - AluSx SINE Alu -12 300 1 210 289 40 53 chr21 3146153 3146229 -31761341 - L3 LINE CR1 -11 1566 1492 1700 119 0 4 chr21 3146315 3146551 -31761019 + AluSq SINE Alu 1 235 -78 1623 226 42 53 chr21 3148146 3148672 -31758898 - MLT2B1 LTR ERVL 0 520 1 936 208 98 37 chr21 3149829 3150074 -31757496 - ORSL DNA AcHobo -15 260 1 1980 146 140 8 chr21 3150282 3150660 -31756910 - MSTA LTR MaLR 0 428 1 202 211 19 0 chr21 3150671 3150723 -31756847 + GA-rich Low_complexity Low_complexity 2 54 0 1516 201 16 73 chr21 3150890 3151274 -31756296 - MLT1B LTR MaLR 0 390 29 808 274 39 0 chr21 3151500 3151704 -31755866 + MIR SINE MIR 1 212 -50 497 186 20 29 chr21 3151936 3152038 -31755532 + MIR SINE MIR 118 218 -44 22 35 0 0 chr21 3153087 3153116 -31754454 + AT_rich Low_complexity Low_complexity 1 29 0 1758 181 14 0 chr21 3154129 3154422 -31753148 - AluJb SINE Alu -15 297 1 721 323 103 18 chr21 3155462 3155793 -31751777 - L2 LINE L2 -1 3312 2954 288 311 96 30 chr21 3157676 3157843 -31749727 - MIR SINE MIR -6 256 79 377 221 81 58 chr21 3158393 3158565 -31749005 + MER34 LTR ERV1 367 542 0 2878 146 69 22 chr21 3158724 3159257 -31748313 - LTR1 LTR ERV1 -2 783 226 1035 167 57 29 chr21 3159970 3160215 -31747355 - LTR1 LTR ERV1 -507 278 27 741 250 40 24 chr21 3160777 3161029 -31746541 + MER31-int LTR ERV1 894 1149 -5182 2623 78 20 0 chr21 3161198 3161546 -31746024 + THE1A LTR MaLR 1 355 0 1390 206 21 83 chr21 3161878 3162139 -31745431 + MER31-int LTR ERV1 3330 3555 -1381 2418 179 0 9 chr21 3162139 3162575 -31744995 + L1PB4 LINE L1 5711 6142 -14 1390 206 21 83 chr21 3162575 3162749 -31744821 + MER31-int LTR ERV1 3555 3738 -1198 495 140 130 0 chr21 3162749 3162849 -31744721 - MSTD LTR MaLR 0 396 284 2149 136 21 24 chr21 3162854 3163230 -31744340 - THE1C LTR MaLR 0 375 1 7540 133 9 22 chr21 3163230 3164399 -31743171 - THE1C-int LTR MaLR 0 1580 427 1320 150 59 66 chr21 3164405 3164692 -31742878 + THE1C LTR MaLR 86 370 -5 6923 54 14 1 chr21 3165920 3166988 -31740582 + L1PA7 LINE L1 5073 6152 -2 185 280 0 0 chr21 3167036 3167086 -31740484 + L2 LINE L2 3262 3311 -2 2111 130 3 0 chr21 3167484 3167783 -31739787 - AluSp SINE Alu -13 300 1 195 319 194 9 chr21 3167930 3168146 -31739424 + L2 LINE L2 1992 2247 -1067 267 333 101 14 chr21 3168543 3168681 -31738889 - L2 LINE L2 0 3313 3164 3414 138 23 0 chr21 3168832 3169399 -31738171 - L1PA16 LINE L1 -2 6164 5585 399 281 94 44 chr21 3169809 3169969 -31737601 - MIR SINE MIR -76 186 19 1115 185 13 12 chr21 3170867 3171221 -31736349 + MSTB LTR MaLR 1 426 0 2007 161 51 108 chr21 3171223 3171731 -31735839 + MLT1D LTR MaLR 23 501 -4 614 309 48 27 chr21 3171741 3172071 -31735499 - MLT1I LTR MaLR -61 348 12 1975 244 70 28 chr21 3172775 3173344 -31734226 + MLT1E LTR MaLR 1 593 0 195 277 0 0 chr21 3175073 3175120 -31732450 + MIR3 SINE MIR 118 164 -44 388 261 101 48 chr21 3175121 3175309 -31732261 - MLT1H LTR MaLR 0 549 352 1831 196 37 3 chr21 3176837 3177190 -31730380 - MLT1A1 LTR MaLR 0 365 1 2655 90 3 0 chr21 3177441 3177795 -31729775 - THE1A LTR MaLR 0 355 1 11101 113 2 6 chr21 3177805 3179390 -31728180 - THE1A-int LTR MaLR 0 1580 1 2728 80 8 0 chr21 3179390 3179742 -31727828 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr21 3180735 3180760 -31726810 + AT_rich Low_complexity Low_complexity 1 25 0 1049 165 107 13 chr21 3183304 3183591 -31723979 - MER7A DNA MER2_type 0 336 12 184 318 68 0 chr21 3183809 3183897 -31723673 + L2 LINE L2 1881 1974 -1340 1922 221 31 15 chr21 3183898 3184356 -31723214 + MLT1C LTR MaLR 1 465 -2 1475 203 3 17 chr21 3184501 3184802 -31722768 - AluJo SINE Alu -15 297 1 627 307 72 16 chr21 3184998 3185249 -31722321 + L1ME LINE L1 5425 5689 -432 354 200 67 0 chr21 3185550 3185625 -31721945 - MER33 DNA MER1_type -244 80 1 2181 98 3 10 chr21 3185705 3186000 -31721570 + AluSx SINE Alu 1 293 -19 221 130 43 0 chr21 3187139 3187185 -31720385 + GA-rich Low_complexity Low_complexity 3 50 0 772 212 62 112 chr21 3189323 3189440 -31718130 - MLT1J1 LTR MaLR 0 446 325 324 0 0 0 chr21 3189440 3189476 -31718094 + (TG)n Simple_repeat Simple_repeat 2 37 0 772 212 62 112 chr21 3189476 3189777 -31717793 - MLT1J1 LTR MaLR -121 325 49 262 170 62 10 chr21 3190035 3190334 -31717236 + (TA)n Simple_repeat Simple_repeat 1 314 0 187 160 48 16 chr21 3190348 3190401 -31717169 + (TA)n Simple_repeat Simple_repeat 2 52 -78 2245 118 0 0 chr21 3190401 3190706 -31716864 + AluSc SINE Alu 1 305 -4 187 160 48 16 chr21 3190706 3190777 -31716793 + (TA)n Simple_repeat Simple_repeat 52 130 0 27 49 0 0 chr21 3193268 3193309 -31714261 + AT_rich Low_complexity Low_complexity 1 41 0 195 42 0 0 chr21 3194757 3194781 -31712789 + (A)n Simple_repeat Simple_repeat 1 24 0 368 325 20 66 chr21 3194854 3195051 -31712519 - MIR3 SINE MIR -2 206 19 365 289 70 0 chr21 3195202 3195330 -31712240 + MIR3 SINE MIR 65 201 -7 1733 135 126 33 chr21 3196231 3196564 -31711006 - THE1B LTR MaLR 0 364 1 541 265 22 44 chr21 3198317 3198498 -31709072 - MER5B DNA MER1_type -1 177 1 1457 137 47 94 chr21 3198882 3199223 -31708347 + AluSq SINE Alu 1 327 0 866 212 6 6 chr21 3199227 3199392 -31708178 + FRAM SINE Alu 1 164 -12 2354 143 0 14 chr21 3199507 3199877 -31707693 - MLT1A1 LTR MaLR 0 365 1 210 225 0 0 chr21 3199991 3200031 -31707539 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 2153 127 3 13 chr21 3200431 3200747 -31706823 + AluSq SINE Alu 1 313 0 222 353 0 12 chr21 3200821 3200906 -31706664 - MIR3 SINE MIR -1 207 124 427 295 34 75 chr21 3201384 3201652 -31705918 + MIR SINE MIR 6 262 0 23 0 0 0 chr21 3202366 3202389 -31705181 + AT_rich Low_complexity Low_complexity 1 23 0 2947 6 0 0 chr21 3202455 3202773 -31704797 + AluYb8 SINE Alu 1 318 0 1414 209 136 15 chr21 3202854 3203184 -31704386 + MLT1A2 LTR MaLR 1 370 -4 29 28 0 0 chr21 3203639 3203675 -31703895 + AT_rich Low_complexity Low_complexity 1 36 0 380 275 104 85 chr21 3204422 3204633 -31702937 - MIR SINE MIR 0 262 48 1587 65 97 0 chr21 3204982 3205199 -31702371 - AluSg SINE Alu -72 238 1 217 0 29 29 chr21 3205621 3205655 -31701915 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 320 250 12 0 chr21 3206142 3206226 -31701344 - MIR SINE MIR 0 262 178 1594 162 48 101 chr21 3207570 3207945 -31699625 + MLT2C1 LTR ERVL 1 355 -42 4200 132 50 8 chr21 3207945 3208666 -31698904 - Tigger3(Golem) DNA MER2_type -2 3027 2277 507 214 10 10 chr21 3208657 3208760 -31698810 - Tigger3(Golem) DNA MER2_type -2921 108 6 28 71 0 0 chr21 3208849 3208905 -31698665 + AT_rich Low_complexity Low_complexity 1 56 0 376 235 47 0 chr21 3208905 3209075 -31698495 + (TA)n Simple_repeat Simple_repeat 1 178 0 116 83 0 0 chr21 3209102 3209379 -31698191 + AT_rich Low_complexity Low_complexity 1 277 0 90 89 0 0 chr21 3209395 3209632 -31697938 + AT_rich Low_complexity Low_complexity 1 237 0 459 220 42 0 chr21 3209637 3209805 -31697765 + (TA)n Simple_repeat Simple_repeat 2 176 0 501 262 33 11 chr21 3209828 3210011 -31697559 - LTR33 LTR ERVL -7 514 328 1838 128 3 18 chr21 3210281 3210563 -31697007 + AluJb SINE Alu 35 312 0 294 73 0 0 chr21 3211522 3211563 -31696007 + (TG)n Simple_repeat Simple_repeat 1 41 0 928 259 13 0 chr21 3212275 3212507 -31695063 + MIR SINE MIR 28 262 0 508 275 53 8 chr21 3213759 3213890 -31693680 + L2 LINE L2 3175 3311 -2 310 314 0 0 chr21 3214681 3214751 -31692819 + L2 LINE L2 3202 3271 -1 733 52 0 0 chr21 3214953 3215049 -31692521 - AluY SINE Alu -3 308 213 2393 73 0 0 chr21 3215470 3215772 -31691798 + AluY SINE Alu 1 302 -9 459 321 73 37 chr21 3216116 3216362 -31691208 + MIR SINE MIR 2 256 -6 2139 121 0 32 chr21 3216790 3217103 -31690467 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr21 3217459 3217482 -31690088 + AT_rich Low_complexity Low_complexity 1 23 0 1681 181 0 7 chr21 3218120 3218426 -31689144 + AluJb SINE Alu 3 306 0 2030 123 0 3 chr21 3220441 3220733 -31686837 + AluSc SINE Alu 1 291 -18 14018 173 14 17 chr21 3221911 3223815 -31683755 - L1MA3 LINE L1 -7 7717 5809 2167 85 0 0 chr21 3223815 3224127 -31683443 - AluY SINE Alu 0 312 1 14018 173 14 17 chr21 3224127 3226879 -31680691 - L1MA3 LINE L1 -1915 5809 3071 1027 159 90 5 chr21 3226883 3227072 -31680498 - AluJb SINE Alu -3 309 105 630 155 10 0 chr21 3227111 3227214 -31680356 - AluJb SINE Alu -185 127 24 16825 135 17 27 chr21 3227226 3228103 -31679467 - L1MA3 LINE L1 -4488 3077 2193 1659 196 6 19 chr21 3228103 3228415 -31679155 - AluJb SINE Alu 0 312 5 16825 135 17 27 chr21 3228415 3230449 -31677121 - L1MA3 LINE L1 -5372 2193 195 908 116 0 0 chr21 3230450 3230588 -31676982 + L1P LINE L1 3675 3812 -2334 955 74 0 20 chr21 3230605 3230753 -31676817 - L1P LINE L1 -1429 4717 4573 2490 66 0 0 chr21 3230754 3231073 -31676497 + L1PA7 LINE L1 5828 6146 -8 1059 151 26 0 chr21 3231087 3231279 -31676291 - L1MA3 LINE L1 -7357 208 12 342 43 0 0 chr21 3232158 3232205 -31675365 - MADE1 DNA Mariner 0 80 34 35 83 0 0 chr21 3232520 3232604 -31674966 + AT_rich Low_complexity Low_complexity 1 84 0 24 32 0 0 chr21 3232642 3232673 -31674897 + AT_rich Low_complexity Low_complexity 1 31 0 711 184 31 117 chr21 3233284 3233507 -31674063 - MER20 DNA MER1_type -1 218 15 587 210 25 12 chr21 3236615 3236777 -31670793 - L1ME2 LINE L1 -1 6232 6069 1887 240 86 29 chr21 3236782 3237529 -31670041 - L1ME2 LINE L1 -184 6047 5257 2128 113 0 19 chr21 3237784 3238102 -31669468 - AluSx SINE Alu 0 312 1 191 146 24 0 chr21 3238166 3238207 -31669363 + (TATG)n Simple_repeat Simple_repeat 2 43 0 662 235 49 6 chr21 3238212 3238395 -31669175 - L1ME2 LINE L1 -1301 4914 4724 865 221 55 58 chr21 3238417 3238598 -31668972 - L1ME2 LINE L1 -1726 4489 4308 2497 62 0 7 chr21 3238598 3238903 -31668667 - AluY SINE Alu -8 303 1 865 221 55 58 chr21 3238903 3239047 -31668523 - L1ME2 LINE L1 -1907 4308 4165 577 321 54 24 chr21 3239150 3240015 -31667555 - L1ME2 LINE L1 -4644 1573 831 291 125 62 21 chr21 3240032 3240128 -31667442 + (TTATA)n Simple_repeat Simple_repeat 1 100 0 316 23 0 93 chr21 3240140 3240226 -31667344 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 779 296 96 54 chr21 3242765 3243320 -31664250 + HAL1 LINE L1 1080 1657 -850 35611 31 0 1 chr21 3244785 3250816 -31656754 + L1PA2 LINE L1 1 6155 0 356 253 46 0 chr21 3251462 3251549 -31656021 - MIR SINE MIR -6 256 166 21 0 0 0 chr21 3251559 3251580 -31655990 + AT_rich Low_complexity Low_complexity 1 21 0 38078 64 9 0 chr21 3251580 3257643 -31649927 - L1PA5 LINE L1 -3 6466 10 1979 141 10 13 chr21 3257658 3257964 -31649606 - AluSx SINE Alu -7 305 1 373 284 121 0 chr21 3258527 3258643 -31648927 + MIR3 SINE MIR 9 138 -70 2462 43 40 10 chr21 3259438 3259740 -31647830 - AluY SINE Alu 0 311 1 458 52 0 0 chr21 3259778 3259836 -31647734 - MER72 LTR ERV1 -30 692 635 445 293 9 17 chr21 3260416 3260532 -31647038 - MIR3 SINE MIR -48 160 46 902 281 94 50 chr21 3262495 3262608 -31644962 + L2 LINE L2 1852 1959 -1355 3161 191 56 60 chr21 3262608 3263503 -31644067 + MER97a DNA MER1_type 2 892 -2 902 281 94 50 chr21 3263503 3263891 -31643679 + L2 LINE L2 1959 2375 -939 2125 111 0 14 chr21 3264259 3264586 -31642984 + AluSx SINE Alu 1 323 0 365 342 93 34 chr21 3264653 3264890 -31642680 + L2 LINE L2 3022 3272 0 369 0 0 0 chr21 3266031 3266072 -31641498 + (TG)n Simple_repeat Simple_repeat 2 42 0 1788 214 72 35 chr21 3266313 3266800 -31640770 - MLT1D LTR MaLR 0 505 1 454 270 36 40 chr21 3267129 3267377 -31640193 + L1ME4a LINE L1 5635 5881 -240 548 278 34 25 chr21 3267467 3267766 -31639804 - MLT1G3 LTR MaLR -181 414 8 26 30 0 0 chr21 3267928 3267961 -31639609 + AT_rich Low_complexity Low_complexity 1 33 0 455 286 54 47 chr21 3269870 3270167 -31637403 + L1MB2 LINE L1 5630 5928 -243 1231 175 36 10 chr21 3269905 3270510 -31637060 + L1MC2 LINE L1 5661 6318 -26 2716 252 42 13 chr21 3271000 3271080 -31636490 + L1M4b LINE L1 29 105 -6754 2060 136 3 7 chr21 3271080 3271388 -31636182 + AluSx SINE Alu 1 307 -5 2716 252 42 13 chr21 3271388 3271978 -31635592 + L1M4b LINE L1 105 718 -6141 949 122 0 0 chr21 3272818 3272966 -31634604 + AluSg/x SINE Alu 163 310 0 201 298 0 0 chr21 3274101 3274148 -31633422 - L2 LINE L2 0 3272 3226 1153 116 0 3 chr21 3274158 3274390 -31633180 + AluSx SINE Alu 11 301 -9 379 35 35 0 chr21 3279702 3279759 -31627811 + (TA)n Simple_repeat Simple_repeat 1 59 0 481 241 68 56 chr21 3281323 3281485 -31626085 - MER5A DNA MER1_type -3 186 23 487 220 25 8 chr21 3287818 3287936 -31619634 + MER104 DNA MER2_type 56 175 -5 2231 120 0 0 chr21 3287970 3288271 -31619299 + AluSx SINE Alu 1 301 -11 2082 132 60 3 chr21 3290366 3290685 -31616885 - MER1B DNA MER1_type 0 337 1 1759 169 0 32 chr21 3291385 3291693 -31615877 - AluJb SINE Alu -14 298 1 3051 180 55 53 chr21 3291718 3292534 -31615036 - Looper DNA T2_type 0 1558 741 1619 183 0 18 chr21 3292534 3292818 -31614752 + AluJb SINE Alu 1 279 -33 1008 185 82 63 chr21 3292857 3293176 -31614394 - Looper DNA T2_type -806 752 428 789 198 12 58 chr21 3293181 3293353 -31614217 + FRAM SINE Alu 1 164 -2 183 156 0 0 chr21 3293364 3293396 -31614174 + GA-rich Low_complexity Low_complexity 2 33 0 1020 199 77 11 chr21 3293411 3293672 -31613898 - Looper DNA T2_type -1127 431 154 944 98 0 0 chr21 3297407 3297530 -31610040 - AluSg1 SINE Alu -186 123 1 21 0 0 0 chr21 3297899 3297920 -31609650 + AT_rich Low_complexity Low_complexity 1 21 0 1839 117 61 0 chr21 3297925 3298223 -31609347 + AluSg SINE Alu 1 314 0 1865 159 10 3 chr21 3299569 3299865 -31607705 - AluJb SINE Alu -12 300 3 22 0 0 0 chr21 3299970 3299992 -31607578 + AT_rich Low_complexity Low_complexity 1 22 0 12099 129 58 67 chr21 3300363 3302799 -31604771 + Tigger1 DNA MER2_type 5 2418 0 588 149 0 0 chr21 3303211 3303298 -31604272 - AluS SINE Alu -225 88 2 22 0 0 0 chr21 3303715 3303737 -31603833 + AT_rich Low_complexity Low_complexity 1 22 0 366 325 49 43 chr21 3304665 3304828 -31602742 - L3 LINE CR1 0 1577 1414 684 255 73 10 chr21 3305834 3306026 -31601544 + MIR SINE MIR 56 259 -3 500 44 0 15 chr21 3306139 3306207 -31601363 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 234 191 0 0 chr21 3306207 3306254 -31601316 + (TA)n Simple_repeat Simple_repeat 2 48 0 219 69 0 0 chr21 3306652 3306681 -31600889 + (GGAGA)n Simple_repeat Simple_repeat 4 32 0 242 234 25 67 chr21 3306975 3307093 -31600477 - MIR SINE MIR -61 147 33 1533 160 10 41 chr21 3309773 3310066 -31597504 - AluJo SINE Alu -27 285 2 1236 142 9 24 chr21 3311303 3311514 -31596056 + AluJo SINE Alu 86 293 -19 2034 103 0 0 chr21 3311863 3312124 -31595446 - AluSx SINE Alu -31 281 21 282 308 69 30 chr21 3312894 3313064 -31594506 + MIR SINE MIR 10 186 -59 258 32 0 0 chr21 3313477 3313508 -31594062 + (TG)n Simple_repeat Simple_repeat 2 32 0 556 307 49 96 chr21 3313521 3313748 -31593822 + L2 LINE L2 2644 2880 -433 827 206 120 17 chr21 3313748 3314040 -31593530 - MER33 DNA MER1_type -2 322 1 556 307 49 96 chr21 3314040 3314421 -31593149 + L2 LINE L2 2880 3238 -75 35 0 0 0 chr21 3314552 3314587 -31592983 + AT_rich Low_complexity Low_complexity 1 35 0 250 176 24 0 chr21 3315406 3315491 -31592079 + (TA)n Simple_repeat Simple_repeat 2 88 0 479 263 25 0 chr21 3315492 3315610 -31591960 - MIR SINE MIR -47 215 95 2397 156 35 9 chr21 3316271 3316694 -31590876 + Tigger2a DNA MER2_type 1 434 0 1324 193 110 0 chr21 3316742 3316996 -31590574 - AluJo SINE Alu -30 282 1 439 315 40 0 chr21 3318057 3318206 -31589364 - L2 LINE L2 0 3313 3159 231 88 0 0 chr21 3320193 3320227 -31587343 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 241 53 0 chr21 3326460 3326630 -31580940 + Charlie1 DNA MER1_type 1 179 -2582 653 202 16 0 chr21 3326655 3326784 -31580786 + Charlie1 DNA MER1_type 2631 2761 0 2417 52 0 0 chr21 3328918 3329206 -31578364 - AluY SINE Alu -21 290 3 26 30 0 0 chr21 3329217 3329250 -31578320 + AT_rich Low_complexity Low_complexity 1 33 0 265 108 0 0 chr21 3329947 3329984 -31577586 - MER103 DNA DNA -126 40 4 2215 112 7 0 chr21 3330167 3330470 -31577100 - AluSg SINE Alu -5 305 1 224 354 77 22 chr21 3331789 3331970 -31575600 + L2 LINE L2 3115 3305 -8 21 57 0 0 chr21 3332491 3332526 -31575044 + AT_rich Low_complexity Low_complexity 1 35 0 1216 222 25 39 chr21 3332660 3333015 -31574555 + L1ME1 LINE L1 5664 6013 -153 577 161 45 0 chr21 3333018 3333130 -31574440 + L1MA10 LINE L1 6209 6325 -9 476 247 68 56 chr21 3333137 3333477 -31574093 + L1ME4a LINE L1 5589 5932 -189 2262 93 7 3 chr21 3334322 3334755 -31572815 + AluY SINE Alu 1 434 0 832 148 0 8 chr21 3334948 3335076 -31572494 - FLAM_A SINE Alu -6 127 1 608 276 143 0 chr21 3335185 3335381 -31572189 - MIR SINE MIR 0 262 39 428 342 154 26 chr21 3336130 3336364 -31571206 - L2 LINE L2 -226 3087 2824 682 210 78 47 chr21 3336559 3336816 -31570754 - L1M4 LINE L1 -2008 4138 3874 44 20 0 0 chr21 3336838 3336889 -31570681 + AT_rich Low_complexity Low_complexity 1 51 0 435 117 26 26 chr21 3336929 3337006 -31570564 + L1MB8 LINE L1 4018 4094 -2052 308 260 83 30 chr21 3337022 3337191 -31570379 + L1MB8 LINE L1 4157 4334 -1812 2336 112 3 0 chr21 3337196 3337507 -31570063 - AluSx SINE Alu 0 312 1 382 123 0 0 chr21 3337602 3337659 -31569911 + AluJ/FLAM SINE Alu 2 58 -244 311 249 30 17 chr21 3337660 3337815 -31569755 + L1MB8 LINE L1 4442 4599 -1547 2376 220 63 50 chr21 3337807 3339298 -31568272 + L1ME1 LINE L1 4614 6161 -5 21 82 0 0 chr21 3339310 3339359 -31568211 + AT_rich Low_complexity Low_complexity 1 49 0 6161 99 23 2 chr21 3339382 3340282 -31567288 + L1PA11 LINE L1 5254 6172 -2 1936 183 54 17 chr21 3340413 3340965 -31566605 + L1MB8 LINE L1 5526 6176 -2 398 309 78 20 chr21 3341289 3341584 -31565986 + L1ME LINE L1 4496 4807 -1339 646 287 53 40 chr21 3341659 3341959 -31565611 + L1ME LINE L1 4910 5213 -933 2040 93 37 0 chr21 3341985 3342254 -31565316 + AluSq SINE Alu 6 284 -29 363 23 0 0 chr21 3342287 3342331 -31565239 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr21 3342504 3342530 -31565040 + AT_rich Low_complexity Low_complexity 1 26 0 474 245 36 7 chr21 3342566 3342705 -31564865 + L1ME LINE L1 5321 5463 -707 369 217 101 16 chr21 3342951 3343080 -31564490 + L1MC4a LINE L1 6443 6582 -1226 2038 238 64 14 chr21 3343089 3343831 -31563739 + L1MC4 LINE L1 6927 7864 -178 776 286 65 19 chr21 3343914 3344321 -31563249 + L1ME3A LINE L1 5294 5725 -437 212 0 0 35 chr21 3344386 3344415 -31563155 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 336 289 118 5 chr21 3344433 3344575 -31562995 + L1ME3A LINE L1 5735 5887 -275 1199 85 40 0 chr21 3344578 3344755 -31562815 + L1MA1 LINE L1 6118 6301 -1 1226 260 178 10 chr21 3346570 3346981 -31560589 + L2 LINE L2 2277 2756 -558 798 256 52 63 chr21 3347037 3347385 -31560185 + L2 LINE L2 2953 3296 -17 712 174 38 0 chr21 3347406 3347538 -31560032 + FRAM SINE Alu 17 153 -23 213 39 0 0 chr21 3347541 3347567 -31560003 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 242 240 125 31 chr21 3347852 3347948 -31559622 + MLT1L LTR MaLR 371 475 -140 267 238 16 0 chr21 3348409 3348472 -31559098 + GA-rich Low_complexity Low_complexity 3 66 0 2474 67 0 0 chr21 3350665 3350963 -31556607 + AluY SINE Alu 3 300 -11 669 216 72 41 chr21 3350967 3351161 -31556409 - MIR SINE MIR -24 238 39 221 241 287 0 chr21 3351405 3351492 -31556078 - MIR SINE MIR -59 203 92 28 0 0 0 chr21 3352511 3352539 -31555031 + AT_rich Low_complexity Low_complexity 1 28 0 365 266 105 16 chr21 3352672 3352796 -31554774 - MIR SINE MIR -40 222 88 24 0 0 0 chr21 3352935 3352959 -31554611 + AT_rich Low_complexity Low_complexity 1 24 0 2178 82 0 4 chr21 3353276 3353557 -31554013 - AluSg SINE Alu -12 298 19 367 294 61 78 chr21 3356612 3356843 -31550727 - L2 LINE L2 -71 3242 3016 256 243 171 0 chr21 3356829 3356899 -31550671 - L2 LINE L2 -511 2803 2722 1110 163 71 77 chr21 3357795 3358121 -31549449 + MER33 DNA MER1_type 1 324 0 753 278 65 47 chr21 3358661 3359110 -31548460 + L1ME3A LINE L1 5585 6041 -129 25 65 0 0 chr21 3359563 3359609 -31547961 + AT_rich Low_complexity Low_complexity 1 46 0 1956 164 25 8 chr21 3360184 3360543 -31547027 + MLT1A1 LTR MaLR 1 365 0 2242 102 0 0 chr21 3361534 3361838 -31545732 - AluSx SINE Alu -8 304 1 273 294 0 15 chr21 3362583 3362651 -31544919 + L2 LINE L2 3206 3272 0 11087 123 10 3 chr21 3363003 3364757 -31542813 - Tigger1 DNA MER2_type -1 2417 651 1360 99 32 32 chr21 3364758 3364979 -31542591 - THE1C LTR MaLR -2 373 153 2349 68 3 0 chr21 3364979 3365272 -31542298 + AluY SINE Alu 1 294 -17 1326 60 24 0 chr21 3365286 3365454 -31542116 - THE1C LTR MaLR -203 172 1 3886 134 53 6 chr21 3365454 3366086 -31541484 - Tigger1 DNA MER2_type -1755 663 2 636 187 107 13 chr21 3368406 3368556 -31539014 + MER74B LTR ERVL 66 229 -393 267 258 114 18 chr21 3368788 3368955 -31538615 - MER88 LTR ERVL -218 246 64 183 80 0 0 chr21 3368992 3369017 -31538553 + (TG)n Simple_repeat Simple_repeat 2 26 0 213 315 41 0 chr21 3372454 3372527 -31535043 - L2 LINE L2 -8 3264 3189 226 269 0 43 chr21 3373657 3373750 -31533820 + A-rich Low_complexity Low_complexity 2 90 0 420 284 19 45 chr21 3375444 3375599 -31531971 + MIR SINE MIR 80 230 -32 222 118 0 0 chr21 3377245 3377279 -31530291 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 27 0 0 0 chr21 3382252 3382279 -31525291 + GC_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr21 3382328 3382364 -31525206 + GC_rich Low_complexity Low_complexity 1 36 0 200 180 0 49 chr21 3382590 3382651 -31524919 + (CGGG)n Simple_repeat Simple_repeat 3 60 0 1257 178 56 44 chr21 3386383 3386703 -31520867 - MER33 DNA MER1_type 0 324 1 252 0 0 0 chr21 3388025 3388053 -31519517 + (CA)n Simple_repeat Simple_repeat 2 29 0 2380 169 45 13 chr21 3388061 3388698 -31518872 + L1ME LINE L1 4876 5530 -644 2459 203 91 0 chr21 3388710 3389218 -31518352 - MLT1F1 LTR MaLR -13 554 1 207 0 0 0 chr21 3390671 3390694 -31516876 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 325 12 0 chr21 3390963 3391043 -31516527 - LTR67 LTR ERVL -363 194 114 2347 175 28 0 chr21 3391296 3391695 -31515875 - MSTB2 LTR MaLR 0 457 48 679 91 9 9 chr21 3391695 3391805 -31515765 + (TTCTC)n Simple_repeat Simple_repeat 3 112 0 1792 174 17 7 chr21 3391810 3392108 -31515462 - AluJb SINE Alu -11 301 1 413 109 0 31 chr21 3392108 3392172 -31515398 - MSTB2 LTR MaLR -395 62 1 1399 188 37 51 chr21 3394015 3394425 -31513145 - MER104 DNA MER2_type -38 1857 1283 207 0 0 0 chr21 3396591 3396614 -31510956 + (CA)n Simple_repeat Simple_repeat 2 24 0 297 267 56 11 chr21 3397635 3397725 -31509845 + L2 LINE L2 3177 3270 -2 647 299 51 82 chr21 3399263 3399772 -31507798 - MLT1K LTR MaLR -69 519 27 22 0 0 0 chr21 3400241 3400263 -31507307 + AT_rich Low_complexity Low_complexity 1 22 0 301 235 12 12 chr21 3401465 3401550 -31506020 + MLT1E1 LTR MaLR 570 654 0 383 291 132 30 chr21 3401760 3401994 -31505576 + L1ME LINE L1 5531 5788 -333 324 0 0 0 chr21 3402193 3402229 -31505341 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 0 0 0 chr21 3405001 3405024 -31502546 + (A)n Simple_repeat Simple_repeat 1 23 0 184 213 82 33 chr21 3405646 3405707 -31501863 + L3 LINE CR1 1513 1576 -1 1886 103 127 24 chr21 3406732 3407072 -31500498 + THE1C LTR MaLR 1 375 0 200 224 52 0 chr21 3407242 3407300 -31500270 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 189 0 0 0 chr21 3407897 3407918 -31499652 + (TA)n Simple_repeat Simple_repeat 1 21 0 263 355 64 0 chr21 3408079 3408220 -31499350 + L1ME3 LINE L1 5492 5641 -529 248 200 9 45 chr21 3408270 3408380 -31499190 + A-rich Low_complexity Low_complexity 6 111 0 369 333 51 9 chr21 3408380 3408596 -31498974 + L1ME3 LINE L1 5716 5940 -222 346 276 10 10 chr21 3408734 3408832 -31498738 + L1MC4 LINE L1 7929 8026 -16 439 221 194 28 chr21 3409381 3409598 -31497972 + L1ME LINE L1 5571 5823 -298 1534 187 10 27 chr21 3409633 3409927 -31497643 + AluJo SINE Alu 1 289 -23 422 217 142 17 chr21 3410611 3410731 -31496839 + L2 LINE L2 3138 3272 0 227 346 45 40 chr21 3411311 3411513 -31496057 + L3 LINE CR1 1077 1279 -298 25 31 0 0 chr21 3412364 3412396 -31495174 + AT_rich Low_complexity Low_complexity 1 32 0 325 374 91 0 chr21 3414871 3415058 -31492512 + L1MC/D LINE L1 5419 5622 -2186 1817 146 23 16 chr21 3415166 3415475 -31492095 + AluSx SINE Alu 1 311 -1 24 67 0 0 chr21 3415627 3415672 -31491898 + AT_rich Low_complexity Low_complexity 1 45 0 223 186 0 0 chr21 3415791 3415834 -31491736 + T-rich Low_complexity Low_complexity 1 43 0 1779 233 40 13 chr21 3417429 3417906 -31489664 - MLT1E2 LTR MaLR 0 626 137 279 0 0 0 chr21 3418030 3418061 -31489509 + (CTA)n Simple_repeat Simple_repeat 3 33 0 505 295 75 20 chr21 3418083 3418283 -31489287 - MIR SINE MIR -34 228 18 2581 61 0 0 chr21 3419830 3420141 -31487429 + AluY SINE Alu 1 311 0 659 201 91 41 chr21 3422325 3422544 -31485026 + MIR SINE MIR 33 262 0 268 170 0 0 chr21 3422774 3422821 -31484749 - L2 LINE L2 0 3313 3267 851 114 0 30 chr21 3423829 3423960 -31483610 - AluJb SINE Alu -185 127 1 387 0 0 0 chr21 3424716 3424759 -31482811 + (TG)n Simple_repeat Simple_repeat 1 43 0 275 350 103 41 chr21 3425357 3425677 -31481893 - L2 LINE L2 -9 3263 2924 1996 213 61 49 chr21 3425687 3425896 -31481674 - L1MD2 LINE L1 -12 6347 6142 360 64 0 0 chr21 3425896 3425943 -31481627 + (TG)n Simple_repeat Simple_repeat 2 48 0 1996 213 61 49 chr21 3425943 3426386 -31481184 - L1MD2 LINE L1 -217 6142 5687 399 308 27 36 chr21 3427553 3427624 -31479946 + L1ME LINE L1 5527 5597 -524 2111 147 0 0 chr21 3427624 3427931 -31479639 - AluSx SINE Alu -5 307 1 399 308 27 36 chr21 3427931 3428080 -31479490 + L1ME LINE L1 5597 5745 -376 22 0 0 0 chr21 3428084 3428106 -31479464 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 3428778 3428802 -31478768 + AT_rich Low_complexity Low_complexity 1 24 0 719 281 60 23 chr21 3428977 3429387 -31478183 + L1ME LINE L1 5456 5881 -283 21 0 0 0 chr21 3432122 3432143 -31475427 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 3432450 3432486 -31475084 + AT_rich Low_complexity Low_complexity 1 36 0 25 27 0 68 chr21 3432575 3432605 -31474965 + AT_rich Low_complexity Low_complexity 1 31 -37 1676 143 8 16 chr21 3432605 3432856 -31474714 + AluSx SINE Alu 37 285 -27 25 27 0 68 chr21 3432856 3432872 -31474698 + AT_rich Low_complexity Low_complexity 31 47 -21 189 0 0 0 chr21 3432872 3432893 -31474677 + (TG)n Simple_repeat Simple_repeat 2 22 0 25 27 0 68 chr21 3432893 3432918 -31474652 + AT_rich Low_complexity Low_complexity 47 68 0 263 191 15 0 chr21 3433008 3433076 -31474494 + GA-rich Low_complexity Low_complexity 3 71 0 2310 102 3 0 chr21 3434047 3434342 -31473228 + AluSp SINE Alu 1 296 -17 701 186 0 0 chr21 3434392 3434521 -31473049 + MLT1A1 LTR MaLR 231 359 -6 272 295 18 54 chr21 3434858 3434970 -31472600 - MIR SINE MIR -115 147 40 1721 185 0 17 chr21 3435399 3435691 -31471879 + AluJb SINE Alu 1 287 -25 1600 166 98 0 chr21 3436199 3436464 -31471106 + AluJb SINE Alu 1 291 -21 2104 91 0 0 chr21 3436471 3436734 -31470836 + AluSg SINE Alu 39 301 -9 527 43 14 0 chr21 3437977 3438047 -31469523 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 213 288 50 0 chr21 3439059 3439139 -31468431 - L2 LINE L2 -3 3310 3227 426 330 36 13 chr21 3439259 3439483 -31468087 - L2 LINE L2 -1256 2058 1830 726 259 59 30 chr21 3440536 3440772 -31466798 + MIR SINE MIR 19 261 -1 1941 137 3 0 chr21 3443524 3443808 -31463762 + AluSx SINE Alu 1 285 -27 21 57 0 0 chr21 3444351 3444386 -31463184 + AT_rich Low_complexity Low_complexity 1 35 0 294 73 0 0 chr21 3446011 3446052 -31461518 + (CA)n Simple_repeat Simple_repeat 2 42 0 487 313 0 0 chr21 3446416 3446531 -31461039 + MIR SINE MIR 2 116 -146 1629 144 45 27 chr21 3446544 3446836 -31460734 - THE1B LTR MaLR -67 297 1 329 291 77 56 chr21 3447085 3447281 -31460289 - L2 LINE L2 -33 3280 3081 1044 143 5 16 chr21 3447530 3447719 -31459851 + MER20 DNA MER1_type 33 219 0 213 303 19 18 chr21 3447727 3447890 -31459680 - L2 LINE L2 -499 2815 2579 2192 167 32 41 chr21 3449934 3450370 -31457200 + MSTB1 LTR MaLR 1 432 0 403 353 0 15 chr21 3450492 3450625 -31456945 - L2 LINE L2 -20 3293 3163 286 289 106 0 chr21 3450694 3450798 -31456772 - L2 LINE L2 -273 3040 2926 2010 176 56 40 chr21 3450813 3451302 -31456268 - MLT1D LTR MaLR -4 563 4 182 140 0 20 chr21 3451693 3451743 -31455827 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 208 197 14 0 chr21 3453773 3453826 -31453744 - MIR SINE MIR -36 172 113 189 262 0 0 chr21 3454194 3454236 -31453334 + L2 LINE L2 3213 3254 -18 1858 163 3 7 chr21 3454807 3455108 -31452462 + AluJb SINE Alu 1 300 -12 279 0 0 0 chr21 3455849 3455880 -31451690 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 225 0 28 chr21 3456949 3457020 -31450550 + A-rich Low_complexity Low_complexity 2 70 0 316 285 80 35 chr21 3459026 3459189 -31448381 - MIR SINE MIR -63 145 22 1759 142 0 74 chr21 3459678 3460015 -31447555 - AluJb SINE Alu 0 312 1 503 326 47 5 chr21 3460306 3460499 -31447071 - MIR SINE MIR -13 249 49 251 352 119 19 chr21 3460920 3461230 -31446340 + L2 LINE L2 2230 2570 -744 1048 186 0 0 chr21 3461583 3461755 -31445815 + FAM SINE Alu 1 172 -3 690 243 62 55 chr21 3461787 3462059 -31445511 + Charlie8 DNA MER1_type 2 275 -2142 1852 169 52 72 chr21 3462069 3462406 -31445164 + L1MC3 LINE L1 7302 7644 -398 1971 147 4 0 chr21 3462406 3462685 -31444885 - AluSx SINE Alu -22 290 11 1852 169 52 72 chr21 3462685 3462819 -31444751 + L1MC3 LINE L1 7644 8037 -5 2349 55 10 0 chr21 3463880 3464173 -31443397 - AluY SINE Alu -15 296 1 344 80 0 0 chr21 3464175 3464225 -31443345 + MADE1 DNA Mariner 31 80 0 577 168 15 44 chr21 3466784 3466921 -31440649 - MER3 DNA MER1_type 0 209 77 1999 126 14 0 chr21 3468059 3468344 -31439226 - AluSx SINE Alu -11 301 13 844 249 28 0 chr21 3469563 3469776 -31437794 - MER20 DNA MER1_type 0 219 1 205 259 0 17 chr21 3470752 3470810 -31436760 + CT-rich Low_complexity Low_complexity 5 61 0 948 320 34 29 chr21 3472179 3472602 -31434968 + MER115 DNA AcHobo 29 428 -265 2239 89 61 19 chr21 3472602 3472962 -31434608 - THE1C LTR MaLR 0 375 1 948 320 34 29 chr21 3472962 3473230 -31434340 + MER115 DNA AcHobo 428 693 0 369 0 0 0 chr21 3473526 3473567 -31434003 + (CA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 3473777 3473799 -31433771 + AT_rich Low_complexity Low_complexity 1 22 0 220 356 176 17 chr21 3475121 3475643 -31431927 - L2 LINE L2 -2047 1267 663 234 361 39 13 chr21 3475842 3475997 -31431573 - L2 LINE L2 -2934 380 222 2111 127 41 36 chr21 3476494 3476856 -31430714 + THE1B LTR MaLR 1 364 0 398 211 13 0 chr21 3479272 3479348 -31428222 + L2 LINE L2 3195 3271 -42 2218 131 0 3 chr21 3479445 3479759 -31427811 - AluSq SINE Alu 0 313 1 2552 175 24 13 chr21 3479760 3480292 -31427278 + L1MB8 LINE L1 5631 6168 -10 300 284 78 0 chr21 3481418 3481520 -31426050 - MIR SINE MIR -65 197 88 23 0 0 0 chr21 3481557 3481580 -31425990 + AT_rich Low_complexity Low_complexity 1 23 0 1704 231 21 21 chr21 3481580 3481742 -31425828 - L1MA9 LINE L1 -38 6274 6113 2321 83 3 0 chr21 3481742 3482044 -31425526 - AluY SINE Alu -8 303 1 1704 231 21 21 chr21 3482044 3482365 -31425205 - L1MA9 LINE L1 -198 6114 5791 218 309 15 0 chr21 3484283 3484351 -31423219 + L2 LINE L2 3242 3310 -3 244 241 25 51 chr21 3484644 3484723 -31422847 - MIR3 SINE MIR -127 81 5 5910 98 24 12 chr21 3485610 3486648 -31420922 + L1PA10 LINE L1 5116 6149 -19 189 0 0 0 chr21 3486648 3486669 -31420901 + (TTAAA)n Simple_repeat Simple_repeat 1 21 0 5910 98 24 12 chr21 3486669 3486687 -31420883 + L1PA10 LINE L1 6149 6165 -3 409 289 7 22 chr21 3486938 3487073 -31420497 - MLT1L LTR MaLR -362 253 121 21 0 0 0 chr21 3487224 3487245 -31420325 + AT_rich Low_complexity Low_complexity 1 21 0 1613 187 53 34 chr21 3487316 3487674 -31419896 - MLT1A1 LTR MaLR 0 365 1 198 0 0 0 chr21 3487787 3487809 -31419761 + (A)n Simple_repeat Simple_repeat 1 22 0 2187 110 0 7 chr21 3489954 3490253 -31417317 - AluSq SINE Alu -16 297 1 217 224 102 0 chr21 3490560 3490609 -31416961 + MIR3 SINE MIR 120 173 -35 1556 187 29 0 chr21 3491742 3492020 -31415550 - AluJb SINE Alu -26 286 1 1293 205 7 15 chr21 3492637 3492910 -31414660 + AluJo SINE Alu 37 307 -5 2340 95 0 7 chr21 3493254 3493560 -31414010 + AluSq SINE Alu 1 304 -9 307 298 202 0 chr21 3494003 3494117 -31413453 - MER5A DNA MER1_type 0 189 53 289 245 10 69 chr21 3494735 3494837 -31412733 + MIR SINE MIR 40 135 -73 2226 93 24 0 chr21 3495546 3495835 -31411735 - AluSx SINE Alu -16 296 1 2506 54 0 0 chr21 3497076 3497374 -31410196 + AluY SINE Alu 10 307 -4 253 197 99 0 chr21 3497995 3498066 -31409504 - MIR3 SINE MIR -30 178 101 2147 85 3 30 chr21 3498242 3498592 -31408978 - AluY SINE Alu 0 342 1 8682 85 7 13 chr21 3498601 3500600 -31406970 - L1PA7 LINE L1 -3 6151 4143 333 264 118 0 chr21 3500789 3500899 -31406671 - L2 LINE L2 -4 3268 3146 213 383 111 21 chr21 3502186 3502421 -31405149 + L2 LINE L2 3017 3272 0 317 317 130 6 chr21 3502790 3502951 -31404619 + MIR SINE MIR 72 252 -10 1449 201 28 17 chr21 3503289 3503643 -31403927 + MLT1A1 LTR MaLR 1 358 -7 22 0 0 0 chr21 3504582 3504604 -31402966 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr21 3504638 3504659 -31402911 + AT_rich Low_complexity Low_complexity 1 21 0 2106 124 137 8 chr21 3505180 3505559 -31402011 - MSTA LTR MaLR 0 428 1 503 147 0 0 chr21 3505713 3505788 -31401782 + AluY SINE Alu 204 278 -33 212 395 18 9 chr21 3506124 3506238 -31401332 - L2 LINE L2 -553 2761 2647 388 291 81 35 chr21 3506245 3506417 -31401153 + L3 LINE CR1 351 530 -1047 383 273 145 15 chr21 3506902 3507081 -31400489 + MIR SINE MIR 34 236 -26 670 300 48 0 chr21 3507674 3507947 -31399623 + LTR33 LTR ERVL 1 286 -235 24 0 0 0 chr21 3508254 3508278 -31399292 + AT_rich Low_complexity Low_complexity 1 24 0 2212 70 31 0 chr21 3510463 3510474 -31397096 - AluY SINE Alu -15 296 287 477 0 0 0 chr21 3510474 3510527 -31397043 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 2212 70 31 0 chr21 3510527 3510802 -31396768 - AluY SINE Alu -24 287 1 808 173 8 17 chr21 3511271 3511601 -31395969 - MSTD LTR MaLR 0 396 1 1932 138 14 3 chr21 3512342 3512639 -31394931 + AluSx SINE Alu 2 301 -11 1815 170 3 20 chr21 3512801 3513107 -31394463 + AluJb SINE Alu 1 301 -11 375 267 40 48 chr21 3514351 3514624 -31392946 + L1MC5 LINE L1 7507 7777 -184 275 318 9 0 chr21 3514645 3514755 -31392815 + L1MC4 LINE L1 7926 8036 -6 400 302 90 28 chr21 3515058 3515270 -31392300 + MIR SINE MIR 17 241 -21 38 51 0 0 chr21 3516662 3516721 -31390849 + AT_rich Low_complexity Low_complexity 1 59 0 200 271 8 127 chr21 3517500 3517618 -31389952 - MIR3 SINE MIR -8 200 97 229 347 91 50 chr21 3517843 3517964 -31389606 - L2 LINE L2 -28 3244 3119 285 171 61 0 chr21 3518802 3518884 -31388686 + (TA)n Simple_repeat Simple_repeat 1 87 0 340 321 29 21 chr21 3518958 3519098 -31388472 + L1MC/D LINE L1 5682 5822 -1986 357 185 49 25 chr21 3519115 3519196 -31388374 + MIR SINE MIR 180 262 0 1771 160 12 91 chr21 3519342 3519761 -31387809 - MLT1B LTR MaLR -2 388 3 2538 44 0 3 chr21 3519884 3520180 -31387390 + AluY SINE Alu 2 296 -15 282 267 30 104 chr21 3521887 3522022 -31385548 - MIR3 SINE MIR -81 127 3 1639 227 6 6 chr21 3523317 3523670 -31383900 + MLT1A1 LTR MaLR 1 353 -12 1381 207 92 45 chr21 3524631 3525075 -31382495 + MLT1C LTR MaLR 3 467 0 724 291 17 34 chr21 3525440 3525674 -31381896 - MIR SINE MIR -8 254 25 327 345 72 29 chr21 3526773 3526912 -31380658 + L2 LINE L2 3127 3271 -1 25 75 0 0 chr21 3529899 3529952 -31377618 + AT_rich Low_complexity Low_complexity 1 53 0 219 364 0 0 chr21 3530696 3530773 -31376797 + CT-rich Low_complexity Low_complexity 3 79 0 1955 101 0 22 chr21 3530941 3531217 -31376353 + AluSq SINE Alu 43 312 -1 369 312 65 47 chr21 3531369 3531584 -31375986 - L2 LINE L2 -411 2903 2685 248 305 53 42 chr21 3531675 3531770 -31375800 - L2 LINE L2 0 3272 3177 911 51 0 0 chr21 3533380 3533498 -31374072 - L1PA5 LINE L1 0 6154 6037 672 43 21 0 chr21 3533498 3533591 -31373979 + L1PA6 LINE L1 5847 5941 -213 240 205 72 60 chr21 3533744 3533827 -31373743 + MIR SINE MIR 98 181 -81 293 260 76 32 chr21 3534645 3534799 -31372771 + L1MC5 LINE L1 7629 7775 -186 192 97 0 0 chr21 3534799 3534830 -31372740 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 293 260 76 32 chr21 3534830 3534854 -31372716 + L1MC5 LINE L1 7775 7797 -164 1446 215 0 17 chr21 3534854 3535147 -31372423 - AluJb SINE Alu -23 289 2 293 260 76 32 chr21 3535147 3535244 -31372326 + L1MC5 LINE L1 7797 7917 -44 4187 128 87 27 chr21 3535320 3536877 -31370693 - pTR5 LTR ERV1 0 2451 1520 2479 73 3 10 chr21 3537152 3537466 -31370104 + AluSx SINE Alu 1 312 0 318 87 0 0 chr21 3538453 3538499 -31369071 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr21 3538498 3538518 -31369052 + (GA)n Simple_repeat Simple_repeat 1 20 0 245 221 73 0 chr21 3540604 3540672 -31366898 + MIR SINE MIR 84 156 -106 251 342 66 37 chr21 3541311 3541691 -31365879 + L2 LINE L2 2140 2530 -784 1804 170 38 39 chr21 3542251 3542797 -31364773 - MLT2A2 LTR ERVL 0 554 6 2293 108 0 10 chr21 3543330 3543636 -31363934 - AluSq SINE Alu -10 303 1 21 36 0 0 chr21 3543637 3543665 -31363905 + AT_rich Low_complexity Low_complexity 1 28 0 354 141 31 16 chr21 3544455 3544519 -31363051 + MER5A DNA MER1_type 125 189 0 391 237 59 8 chr21 3544871 3544989 -31362581 - MLT1J1 LTR MaLR -257 189 66 1858 132 22 39 chr21 3545104 3545415 -31362155 - AluSq SINE Alu -7 306 1 386 290 23 62 chr21 3545854 3546030 -31361540 - Charlie8 DNA MER1_type -2143 274 106 387 0 0 0 chr21 3546143 3546186 -31361384 + (TG)n Simple_repeat Simple_repeat 2 44 0 1791 166 0 18 chr21 3546186 3546470 -31361100 - AluJo SINE Alu -28 284 6 2202 92 0 0 chr21 3546640 3546947 -31360623 - AluSg SINE Alu 0 307 1 22 0 0 0 chr21 3547150 3547172 -31360398 + AT_rich Low_complexity Low_complexity 1 22 0 2272 98 3 0 chr21 3547637 3547933 -31359637 - AluSq SINE Alu -16 297 1 203 96 58 19 chr21 3548027 3548079 -31359491 + T-rich Low_complexity Low_complexity 2 55 0 1865 166 3 10 chr21 3548201 3548514 -31359056 - AluJb SINE Alu 0 312 2 212 216 27 27 chr21 3548609 3548683 -31358887 + CT-rich Low_complexity Low_complexity 2 75 0 351 272 114 75 chr21 3548789 3549123 -31358447 - HAL1 LINE L1 -1344 1163 817 1324 112 79 9 chr21 3549271 3549486 -31358084 - MER30 DNA MER1_type 0 230 1 449 301 35 22 chr21 3549654 3549880 -31357690 + LTR33A LTR ERVL 295 523 0 23 92 0 0 chr21 3550260 3550325 -31357245 + AT_rich Low_complexity Low_complexity 1 65 0 269 253 40 0 chr21 3551454 3551529 -31356041 + MLT1K LTR MaLR 511 588 0 2704 131 23 5 chr21 3551885 3552327 -31355243 + L1PA15 LINE L1 5709 6158 -7 839 131 81 45 chr21 3552775 3552973 -31354597 + THE1C LTR MaLR 83 287 -88 240 59 0 0 chr21 3553018 3553052 -31354518 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 802 238 44 67 chr21 3553371 3553392 -31354178 - MER39 LTR ERV1 -49 636 616 1449 117 101 79 chr21 3553392 3553759 -31353811 + THE1C LTR MaLR 1 375 0 802 238 44 67 chr21 3553759 3554122 -31353448 - MER39 LTR ERV1 -69 616 243 774 50 0 0 chr21 3554326 3554426 -31353144 - L1PA5 LINE L1 -6 6148 6049 266 79 0 0 chr21 3554426 3554464 -31353106 + L1P2 LINE L1 5698 5735 -419 1256 153 5 0 chr21 3554957 3555153 -31352417 - AluSg/x SINE Alu -1 309 113 591 267 116 27 chr21 3555888 3556034 -31351536 - MIR SINE MIR 0 262 88 1748 112 0 0 chr21 3556034 3556275 -31351295 + AluSq SINE Alu 1 241 -72 591 267 116 27 chr21 3556275 3556353 -31351217 - MIR SINE MIR -174 88 18 2383 159 26 14 chr21 3556896 3557317 -31350253 + MSTB LTR MaLR 1 426 0 369 0 0 0 chr21 3557489 3557530 -31350040 + (TA)n Simple_repeat Simple_repeat 2 42 0 1013 164 94 101 chr21 3557530 3557816 -31349754 - AluJo SINE Alu -18 284 1 497 250 88 7 chr21 3560948 3561096 -31346474 - MIR SINE MIR -55 207 48 826 244 49 10 chr21 3562766 3562971 -31344599 + MIR SINE MIR 40 252 -10 195 100 0 0 chr21 3563146 3563176 -31344394 + (TC)n Simple_repeat Simple_repeat 1 30 0 206 301 72 12 chr21 3563354 3563437 -31344133 + MER5A DNA MER1_type 91 178 -11 787 202 92 52 chr21 3564372 3564804 -31342766 - MLT1D LTR MaLR 0 505 5 306 0 0 0 chr21 3565695 3565729 -31341841 + (TA)n Simple_repeat Simple_repeat 2 35 0 2241 99 0 7 chr21 3565729 3566032 -31341538 - AluY SINE Alu -10 301 1 1370 185 83 23 chr21 3566101 3566366 -31341204 - AluJo SINE Alu -31 281 1 24 0 0 0 chr21 3567039 3567063 -31340507 + AT_rich Low_complexity Low_complexity 1 24 0 216 188 125 0 chr21 3567981 3568029 -31339541 + L2 LINE L2 3248 3301 -12 270 357 108 46 chr21 3569825 3570130 -31337440 - L2 LINE L2 -59 3213 2890 3118 108 20 0 chr21 3570738 3571182 -31336388 - MLT2A2 LTR ERVL 0 453 1 890 169 33 26 chr21 3571243 3571463 -31336107 + MLT1D LTR MaLR 22 239 -266 702 232 7 0 chr21 3571514 3571669 -31335901 + MLT1D LTR MaLR 337 492 -13 22 35 0 0 chr21 3572843 3572872 -31334698 + AT_rich Low_complexity Low_complexity 1 29 0 181 235 0 0 chr21 3572985 3573019 -31334551 - MIR SINE MIR -88 120 87 2281 106 0 3 chr21 3573271 3573572 -31333998 + AluSg SINE Alu 1 300 -10 206 64 0 85 chr21 3574712 3574759 -31332811 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 22 0 0 0 chr21 3575366 3575388 -31332182 + AT_rich Low_complexity Low_complexity 1 22 0 649 327 15 21 chr21 3575771 3576016 -31331554 + MIR SINE MIR 15 262 0 270 160 0 0 chr21 3576041 3576091 -31331479 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 459 317 25 25 chr21 3577412 3577611 -31329959 - MIR SINE MIR -62 200 2 1009 220 9 22 chr21 3578372 3578599 -31328971 - MER58A DNA MER1_type 0 224 1 10536 31 0 0 chr21 3579160 3581184 -31326386 - L1PA3 LINE L1 -3 6152 4129 892 260 86 8 chr21 3582430 3582791 -31324779 - Charlie4a DNA MER1_type -1 507 119 1148 170 0 28 chr21 3583378 3583590 -31323980 + MER3 DNA MER1_type 4 209 0 2593 47 0 0 chr21 3584826 3585127 -31322443 + AluY SINE Alu 1 301 -10 686 262 52 22 chr21 3586053 3586282 -31321288 - MIR SINE MIR -22 240 5 1100 224 33 76 chr21 3586426 3586586 -31320984 + MLT1B LTR MaLR 15 180 -210 2210 128 0 0 chr21 3586586 3586891 -31320679 + AluSx SINE Alu 1 305 -7 1100 224 33 76 chr21 3586891 3587123 -31320447 + MLT1B LTR MaLR 180 390 0 261 139 0 0 chr21 3587659 3587702 -31319868 + (TTCTCC)n Simple_repeat Simple_repeat 6 48 0 1244 189 0 5 chr21 3587704 3587921 -31319649 - AluJo SINE Alu -4 308 93 1882 148 3 26 chr21 3588319 3588630 -31318940 + AluSx SINE Alu 1 304 -8 2500 112 0 6 chr21 3588863 3589220 -31318350 + THE1A LTR MaLR 1 355 0 2077 127 0 0 chr21 3589752 3590082 -31317488 - AluSx SINE Alu 0 330 1 331 320 24 32 chr21 3591289 3591414 -31316156 - MER5A DNA MER1_type -2 187 64 24 0 0 0 chr21 3594810 3594834 -31312736 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 3596681 3596702 -31310868 + AT_rich Low_complexity Low_complexity 1 21 0 769 161 0 8 chr21 3596702 3596820 -31310750 - AluJo SINE Alu -184 118 2 21 0 0 0 chr21 3597061 3597082 -31310488 + AT_rich Low_complexity Low_complexity 1 21 0 215 372 0 0 chr21 3597498 3597576 -31309994 + L2 LINE L2 3196 3273 -40 301 211 88 147 chr21 3597764 3597968 -31309602 - HAL1 LINE L1 -34 2473 2282 262 284 48 34 chr21 3597991 3598199 -31309371 - HAL1 LINE L1 -343 2164 1954 1063 306 56 25 chr21 3598297 3598631 -31308939 - HAL1 LINE L1 -622 1885 1534 1558 199 42 9 chr21 3598631 3598963 -31308607 - MER61A LTR ERV1 0 343 1 1063 306 56 25 chr21 3598963 3599059 -31308511 - HAL1 LINE L1 -973 1534 1442 238 257 50 10 chr21 3599172 3599273 -31308297 - HAL1 LINE L1 -1256 1251 1147 470 316 37 28 chr21 3599278 3599493 -31308077 - HAL1 LINE L1 -1416 1091 875 232 312 133 23 chr21 3599687 3599815 -31307755 - HAL1 LINE L1 -1867 640 499 22 80 0 0 chr21 3600166 3600216 -31307354 + AT_rich Low_complexity Low_complexity 1 50 0 204 245 0 0 chr21 3601200 3601249 -31306321 + A-rich Low_complexity Low_complexity 1 49 0 2302 132 25 6 chr21 3602098 3602455 -31305115 - THE1B LTR MaLR 0 364 1 1842 137 3 34 chr21 3602517 3602852 -31304718 - AluSx SINE Alu 0 326 1 25 75 0 0 chr21 3603754 3603807 -31303763 + AT_rich Low_complexity Low_complexity 1 53 0 1432 210 45 18 chr21 3604498 3604784 -31302786 - AluJo SINE Alu -18 294 1 2106 174 142 9 chr21 3606020 3606479 -31301091 + MLT2B1 LTR ERVL 1 520 0 6968 160 55 46 chr21 3606915 3608552 -31299018 - MER52A LTR ERV1 0 1755 1 419 301 25 25 chr21 3609393 3609589 -31297981 - LTR16A1 LTR ERVL -91 366 171 325 159 0 0 chr21 3613081 3613150 -31294420 - L1MA10 LINE L1 -2 6332 6264 903 230 38 83 chr21 3613153 3613385 -31294185 - L1MEc LINE L1 -5173 1223 1021 3331 142 9 15 chr21 3613385 3613915 -31293655 - MER1A DNA MER1_type 0 527 1 903 230 38 83 chr21 3613915 3614151 -31293419 - L1MEc LINE L1 -5375 1021 776 244 143 18 0 chr21 3614151 3614207 -31293363 - LTR66 LTR ERVL -382 228 172 217 200 40 0 chr21 3614207 3614257 -31293313 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 769 233 88 16 chr21 3614286 3614479 -31293091 - MIR SINE MIR -9 253 47 1425 265 63 25 chr21 3614482 3614991 -31292579 - L1MEc LINE L1 -5636 760 233 524 114 0 48 chr21 3615153 3615258 -31292312 + (TG)n Simple_repeat Simple_repeat 1 100 0 2167 102 0 3 chr21 3616361 3616714 -31290856 + AluSp SINE Alu 1 352 0 216 300 17 0 chr21 3617069 3617129 -31290441 + L2 LINE L2 3205 3265 -7 22 94 0 0 chr21 3617295 3617359 -31290211 + AT_rich Low_complexity Low_complexity 1 64 0 357 24 0 0 chr21 3617593 3617635 -31289935 + (CA)n Simple_repeat Simple_repeat 1 42 0 2116 131 35 71 chr21 3618692 3619058 -31288512 - LTR18A LTR ERVL -1 356 4 785 207 57 10 chr21 3619276 3619469 -31288101 - MIR SINE MIR -54 208 7 271 0 0 49 chr21 3620365 3620406 -31287164 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2435 179 26 13 chr21 3622583 3623119 -31284451 - L1MC2 LINE L1 -1 6343 5801 755 211 11 17 chr21 3623197 3623372 -31284198 + L1PB3 LINE L1 5969 6142 -12 2098 137 0 10 chr21 3625386 3625873 -31281697 + AluSx SINE Alu 3 312 0 277 272 70 35 chr21 3627651 3627765 -31279805 + MIR SINE MIR 33 150 -58 1526 207 42 6 chr21 3628771 3629124 -31278446 + MER47A DNA MER2_type 1 366 0 24 32 0 0 chr21 3629733 3629764 -31277806 + AT_rich Low_complexity Low_complexity 1 31 0 1748 162 60 30 chr21 3629809 3630173 -31277397 + THE1C LTR MaLR 1 375 0 1122 249 55 35 chr21 3631265 3631663 -31275907 - MLT1I LTR MaLR -1 408 3 1410 210 31 12 chr21 3631880 3632101 -31275469 - MER58B DNA MER1_type -2079 341 126 2381 96 0 3 chr21 3632101 3632413 -31275157 - AluY SINE Alu 0 311 1 1410 210 31 12 chr21 3632413 3632445 -31275125 - MER58B DNA MER1_type -2294 126 96 2326 108 0 0 chr21 3632445 3632740 -31274830 + AluSg SINE Alu 1 295 -15 1410 210 31 12 chr21 3632740 3632809 -31274761 - MER58B DNA MER1_type -2324 96 12 2177 92 0 10 chr21 3633766 3634060 -31273510 + AluSc SINE Alu 1 291 -18 2532 65 0 0 chr21 3634445 3634769 -31272801 - L1PA6 LINE L1 0 6154 5831 2320 106 39 25 chr21 3634788 3635147 -31272423 + THE1B LTR MaLR 1 364 0 1101 203 59 24 chr21 3635806 3635870 -31271700 - Charlie1 DNA MER1_type -4 2757 2697 586 212 50 11 chr21 3635870 3636049 -31271521 - MER53 DNA DNA 0 189 4 1101 203 59 24 chr21 3636049 3636452 -31271118 - Charlie1 DNA MER1_type -64 2697 2264 2070 130 9 22 chr21 3636467 3636783 -31270787 - AluSx SINE Alu 0 312 1 519 250 7 7 chr21 3636784 3636928 -31270642 - Charlie1 DNA MER1_type -481 2280 2137 2833 221 79 41 chr21 3636925 3637826 -31269744 - Charlie1a DNA MER1_type -519 936 2 5149 174 28 14 chr21 3638628 3639914 -31267656 - L1MA5 LINE L1 0 6300 4992 318 296 74 42 chr21 3639927 3640116 -31267454 + L2 LINE L2 3112 3306 -7 1548 196 11 21 chr21 3640116 3640401 -31267169 + AluJo SINE Alu 1 282 -30 210 37 0 0 chr21 3643502 3643529 -31264041 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 292 219 16 0 chr21 3643789 3643853 -31263717 + MER52A LTR ERV1 1 65 -1690 4050 207 49 15 chr21 3644446 3645984 -31261586 + MER52A LTR ERV1 379 1755 0 23 0 0 0 chr21 3646137 3646160 -31261410 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr21 3647427 3647456 -31260114 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr21 3648568 3648611 -31258959 + AT_rich Low_complexity Low_complexity 1 43 0 342 286 22 11 chr21 3648982 3649073 -31258497 + MER5A DNA MER1_type 11 102 -87 205 267 0 0 chr21 3649527 3649572 -31257998 + (TG)n Simple_repeat Simple_repeat 2 46 0 273 233 11 22 chr21 3649662 3649752 -31257818 - L1MC5 LINE L1 -44 7917 7829 310 237 0 0 chr21 3649929 3650005 -31257565 - L1ME2 LINE L1 -20 6144 6069 1249 222 109 35 chr21 3650026 3650485 -31257085 + L1ME2 LINE L1 5523 6015 -149 13667 161 27 4 chr21 3650493 3653316 -31254254 - L1PA12 LINE L1 -4004 3580 425 1122 263 13 19 chr21 3653580 3653956 -31253614 + L1M4 LINE L1 4048 4421 -1725 1577 213 58 3 chr21 3653980 3654116 -31253454 - L1PB4 LINE L1 -11 6145 5764 1058 164 26 0 chr21 3654147 3654342 -31253228 - L1PB4 LINE L1 -193 5963 5764 3364 224 23 17 chr21 3654345 3655274 -31252296 + L1M4 LINE L1 4415 5348 -798 1072 207 30 33 chr21 3655302 3655572 -31251998 + L1M4 LINE L1 5399 5667 -507 2603 61 0 0 chr21 3655578 3655889 -31251681 + AluY SINE Alu 1 311 0 4428 142 29 0 chr21 3655894 3656657 -31250913 + L1MA8 LINE L1 5500 6284 -7 21 57 0 0 chr21 3657131 3657166 -31250404 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr21 3657363 3657384 -31250186 + (A)n Simple_repeat Simple_repeat 1 21 0 1837 127 61 71 chr21 3658288 3658667 -31248903 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr21 3658717 3658740 -31248830 + (T)n Simple_repeat Simple_repeat 1 23 0 213 344 10 31 chr21 3659051 3659147 -31248423 + L2 LINE L2 3137 3230 -42 215 296 204 0 chr21 3661450 3661538 -31246032 - L2 LINE L2 0 3313 3208 2183 114 0 3 chr21 3663487 3663785 -31243785 - AluSq SINE Alu -16 297 1 706 311 60 38 chr21 3664446 3664813 -31242757 - L2 LINE L2 -2 3311 2937 1705 262 18 7 chr21 3664813 3665367 -31242203 + L1 LINE L1 2700 3259 -2887 8543 177 27 44 chr21 3665525 3667694 -31239876 + L1PA16 LINE L1 3303 5509 -657 2309 104 0 3 chr21 3667694 3668001 -31239569 + AluSg SINE Alu 1 306 -4 8543 177 27 44 chr21 3668001 3668139 -31239431 + L1PA16 LINE L1 5509 5648 -518 2025 135 10 3 chr21 3668139 3668436 -31239134 + AluSx SINE Alu 1 299 -13 8543 177 27 44 chr21 3668436 3668836 -31238734 + L1PA16 LINE L1 5648 5956 -210 2211 130 0 0 chr21 3668836 3669144 -31238426 + AluSx SINE Alu 1 308 -4 8543 177 27 44 chr21 3669144 3669343 -31238227 + L1PA16 LINE L1 5956 6157 -9 185 279 0 23 chr21 3669366 3669409 -31238161 - L2 LINE L2 -364 2950 2909 348 308 43 0 chr21 3669759 3669876 -31237694 - LTR33 LTR ERVL -399 122 1 729 301 50 45 chr21 3669876 3670600 -31236970 - L2 LINE L2 -402 2912 2046 1007 189 6 8 chr21 3671123 3671337 -31236233 + MLT1D LTR MaLR 4 178 -327 307 221 89 132 chr21 3671394 3671584 -31235986 + MLT1D LTR MaLR 286 467 0 1112 173 64 54 chr21 3674508 3674803 -31232767 + MER33 DNA MER1_type 13 310 -14 180 0 0 0 chr21 3675066 3675086 -31232484 + (CA)n Simple_repeat Simple_repeat 2 21 0 373 256 23 0 chr21 3676314 3676400 -31231170 - MER5A DNA MER1_type -93 96 9 448 16 0 0 chr21 3678237 3678298 -31229272 - AluY SINE Alu -2 308 248 2116 213 77 5 chr21 3680880 3681057 -31226513 - L1ME1 LINE L1 -8 6158 5995 1960 164 0 0 chr21 3681057 3681368 -31226202 - AluSx SINE Alu -1 311 1 2116 213 77 5 chr21 3681368 3682234 -31225336 - L1ME1 LINE L1 -171 5995 5030 751 278 39 7 chr21 3682241 3682525 -31225045 - L1ME1 LINE L1 -3148 2998 2706 1085 158 0 0 chr21 3682620 3682791 -31224779 - Tigger4(Zombi) DNA MER2_type -1 2730 2560 3087 146 25 31 chr21 3683624 3684174 -31223396 - LTR10A LTR ERV1 -62 547 1 549 111 89 0 chr21 3684799 3684889 -31222681 + MER4A LTR ERV1 1 98 -566 1735 134 0 90 chr21 3684942 3685263 -31222307 + MER4A LTR ERV1 373 664 0 204 125 0 0 chr21 3685435 3685467 -31222103 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr21 3685790 3685818 -31221752 + AT_rich Low_complexity Low_complexity 1 28 0 1476 202 6 22 chr21 3685942 3686259 -31221311 - AluJo SINE Alu 0 312 1 1568 206 18 26 chr21 3686698 3687047 -31220523 - L1MB8 LINE L1 0 6178 5831 216 0 0 0 chr21 3687047 3687071 -31220499 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1568 206 18 26 chr21 3687071 3687104 -31220466 - L1MB8 LINE L1 -347 5831 5799 1341 179 14 21 chr21 3687112 3687397 -31220173 - L1MB8 LINE L1 -356 5828 5546 21 57 0 0 chr21 3687760 3687795 -31219775 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 3688953 3688975 -31218595 + AT_rich Low_complexity Low_complexity 1 22 0 716 261 6 6 chr21 3689294 3689459 -31218111 + MER5A DNA MER1_type 1 165 -24 180 311 66 60 chr21 3689480 3689647 -31217923 - MER5A DNA MER1_type 0 189 22 484 267 81 37 chr21 3689661 3689822 -31217748 + MER5B DNA MER1_type 8 175 -3 211 336 100 36 chr21 3690581 3690801 -31216769 + L2 LINE L2 2549 2782 -532 306 340 23 2 chr21 3692373 3692483 -31215087 - MIR SINE MIR -65 143 25 2537 62 0 3 chr21 3692483 3692791 -31214779 - AluY SINE Alu -4 307 1 306 340 23 2 chr21 3692791 3692803 -31214767 - MIR SINE MIR -183 25 15 442 279 66 11 chr21 3692999 3693182 -31214388 - MLT1I LTR MaLR -137 272 80 370 136 0 0 chr21 3693192 3693251 -31214319 + LTR1B LTR ERV1 1 59 -767 2232 157 47 19 chr21 3693341 3694048 -31213522 + LTR1B LTR ERV1 61 826 0 1883 281 94 29 chr21 3695646 3696371 -31211199 - L2 LINE L2 -436 2878 2107 1066 314 50 13 chr21 3696788 3697244 -31210326 + L2 LINE L2 1937 2409 -905 416 318 71 12 chr21 3697527 3697697 -31209873 - MIR3 SINE MIR -9 199 20 4246 163 81 4 chr21 3698436 3699201 -31208369 + LTR1B LTR ERV1 3 826 0 514 329 52 26 chr21 3699496 3699727 -31207843 + MIR SINE MIR 16 252 -10 1412 234 119 30 chr21 3699889 3700351 -31207219 - MLT1D LTR MaLR -2 503 1 2372 100 6 0 chr21 3702571 3702882 -31204688 + AluSq SINE Alu 1 313 0 675 318 80 3 chr21 3703379 3703665 -31203905 + L3 LINE CR1 1178 1485 -92 850 354 19 11 chr21 3703789 3704151 -31203419 + L1MEc LINE L1 32 396 -6000 1544 193 86 82 chr21 3704416 3704976 -31202594 + LTR1B LTR ERV1 265 826 0 1955 151 10 62 chr21 3704977 3705393 -31202177 + L1MA7 LINE L1 5617 6010 -281 783 196 0 21 chr21 3705567 3705710 -31201860 + FRAM SINE Alu 19 158 -18 307 243 0 87 chr21 3705840 3706025 -31201545 + (ATATG)n Simple_repeat Simple_repeat 5 173 0 222 272 0 84 chr21 3706183 3706374 -31201196 + (ATATG)n Simple_repeat Simple_repeat 5 179 0 474 306 60 8 chr21 3706421 3706804 -31200766 + L1MEc LINE L1 1278 1680 -4716 1008 234 46 54 chr21 3706801 3707305 -31200265 + L1MEc LINE L1 2945 3444 -2771 622 273 33 0 chr21 3707290 3707473 -31200097 + L1MEc LINE L1 1678 1866 -4530 253 254 77 43 chr21 3707519 3707634 -31199936 + L1MEc LINE L1 4545 4672 -1543 1845 144 17 45 chr21 3707634 3707988 -31199582 - MER2 DNA MER2_type 0 344 1 253 254 77 43 chr21 3707988 3708081 -31199489 + L1MEc LINE L1 4672 4760 -1455 271 296 30 7 chr21 3708234 3708369 -31199201 + L1P LINE L1 4878 5015 -1131 4949 132 25 25 chr21 3708534 3708915 -31198655 - L1PA16 LINE L1 -21 6145 5766 2334 143 23 10 chr21 3708915 3709313 -31198257 + MER57A LTR ERV1 1 403 0 4949 132 25 25 chr21 3709313 3709741 -31197829 - L1PA16 LINE L1 -400 5766 5329 2347 107 0 0 chr21 3709741 3710039 -31197531 - AluSx SINE Alu -14 298 1 4949 132 25 25 chr21 3710039 3710240 -31197330 - L1PA16 LINE L1 -837 5329 5130 1243 177 0 5 chr21 3710242 3710440 -31197130 - AluJb SINE Alu -17 295 99 1168 266 0 0 chr21 3710440 3710763 -31196807 - L1PA16 LINE L1 -1034 5112 4790 2454 211 8 5 chr21 3710756 3711362 -31196208 - L1 LINE L1 -1428 4718 4111 258 103 0 0 chr21 3711633 3711672 -31195898 + L1PA16 LINE L1 5925 5963 -203 593 184 54 20 chr21 3711674 3711821 -31195749 + L1PA16 LINE L1 6015 6166 0 26 30 0 0 chr21 3712445 3712478 -31195092 + AT_rich Low_complexity Low_complexity 1 33 0 231 358 32 25 chr21 3712732 3713257 -31194313 + L1MC/D LINE L1 4490 5018 -1128 1256 236 49 20 chr21 3713551 3713941 -31193629 + L1MC/D LINE L1 5363 5763 -2045 2320 145 40 42 chr21 3715048 3715475 -31192095 + MSTB LTR MaLR 1 426 0 486 282 130 99 chr21 3715499 3715608 -31191962 + L2 LINE L2 2804 2908 -405 1902 162 0 0 chr21 3715608 3715920 -31191650 + AluSx SINE Alu 1 312 0 486 282 130 99 chr21 3715920 3716141 -31191429 + L2 LINE L2 2908 3158 -155 1395 213 66 20 chr21 3716141 3716488 -31191082 - MLT1A1 LTR MaLR 0 365 3 486 282 130 99 chr21 3716488 3716647 -31190923 + L2 LINE L2 3158 3311 -2 1819 213 102 28 chr21 3716684 3717154 -31190416 + MLT1D LTR MaLR 1 505 0 297 0 0 0 chr21 3717245 3717278 -31190292 + (TC)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr21 3717277 3717300 -31190270 + (TG)n Simple_repeat Simple_repeat 2 24 0 690 170 0 0 chr21 3717317 3717464 -31190106 + GA-rich Low_complexity Low_complexity 2 148 0 1849 179 3 25 chr21 3717472 3717836 -31189734 - MLT2D LTR ERVL -56 358 3 464 203 8 45 chr21 3718337 3718470 -31189100 + MLT1K LTR MaLR 447 574 -14 694 271 76 46 chr21 3720694 3720996 -31186574 - MLT1J LTR MaLR -159 352 42 2734 13 0 0 chr21 3721628 3721931 -31185639 - AluY SINE Alu -8 303 1 24 67 0 0 chr21 3722076 3722121 -31185449 + AT_rich Low_complexity Low_complexity 1 45 0 2272 98 0 9 chr21 3722231 3722547 -31185023 - AluSq SINE Alu 0 313 1 369 295 36 0 chr21 3722574 3722686 -31184884 - MIR SINE MIR -37 225 110 23 33 0 0 chr21 3723767 3723797 -31183773 + AT_rich Low_complexity Low_complexity 1 30 0 541 309 76 14 chr21 3723895 3724118 -31183452 + L2 LINE L2 2297 2533 -781 193 374 53 48 chr21 3724227 3724414 -31183156 + L2 LINE L2 2670 2857 -457 1617 174 110 62 chr21 3725743 3726181 -31181389 + MLT1C LTR MaLR 1 459 -8 29 18 0 55 chr21 3728238 3728293 -31179277 + AT_rich Low_complexity Low_complexity 1 52 0 673 274 67 18 chr21 3728657 3728880 -31178690 + MIR SINE MIR 1 234 -28 565 280 85 10 chr21 3728922 3729122 -31178448 + MIR SINE MIR 14 228 -34 2490 117 11 16 chr21 3729573 3729950 -31177620 + THE1C LTR MaLR 1 375 0 243 0 0 0 chr21 3729996 3730023 -31177547 + (TG)n Simple_repeat Simple_repeat 2 28 0 2085 136 0 3 chr21 3731073 3731375 -31176195 - AluJb SINE Alu -1 311 11 3822 185 14 1 chr21 3731450 3732190 -31175380 + L1MB4 LINE L1 5430 6178 -2 380 276 119 23 chr21 3732537 3732934 -31174636 - L1MC/D LINE L1 -312 5809 5373 22 0 0 0 chr21 3736299 3736321 -31171249 + AT_rich Low_complexity Low_complexity 1 22 0 272 343 80 34 chr21 3736385 3736560 -31171010 - L3 LINE CR1 -100 1477 1295 436 292 82 10 chr21 3739887 3740082 -31167488 - MIR SINE MIR -14 248 40 299 354 34 6 chr21 3740682 3740860 -31166710 + HAL1 LINE L1 257 439 -2068 1668 268 86 55 chr21 3741309 3742521 -31165049 + HAL1 LINE L1 1115 2364 -143 288 305 0 19 chr21 3742650 3742755 -31164815 + A-rich Low_complexity Low_complexity 1 103 0 3012 180 92 44 chr21 3743020 3743771 -31163799 + LTR48 LTR ERV1 1 787 0 3264 184 36 55 chr21 3744940 3745710 -31161860 - L1MB8 LINE L1 0 6178 5431 2200 114 0 17 chr21 3745710 3746007 -31161563 - AluSx SINE Alu -20 292 1 3264 184 36 55 chr21 3746007 3746322 -31161248 - L1MB8 LINE L1 -747 5431 5112 374 358 40 10 chr21 3746526 3746727 -31160843 - MIR SINE MIR -31 231 25 2372 169 15 0 chr21 3749411 3749818 -31157752 - MSTB LTR MaLR -13 413 1 263 356 11 0 chr21 3749819 3749906 -31157664 - MIR SINE MIR -56 152 65 293 140 18 0 chr21 3750758 3750815 -31156755 + (CAA)n Simple_repeat Simple_repeat 3 60 0 1518 200 112 13 chr21 3751799 3752451 -31155119 - LTR48 LTR ERV1 -45 742 11 218 191 0 24 chr21 3752561 3752603 -31154967 + L3 LINE CR1 1535 1575 -2 183 211 35 88 chr21 3752752 3752809 -31154761 - L2 LINE L2 -81 3232 3179 222 37 0 0 chr21 3753232 3753259 -31154311 + (T)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr21 3754503 3754526 -31153044 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 3755395 3755416 -31152154 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 3756350 3756374 -31151196 + AT_rich Low_complexity Low_complexity 1 24 0 236 62 0 62 chr21 3756961 3757009 -31150561 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 213 311 92 8 chr21 3757369 3757488 -31150082 + L2 LINE L2 3178 3306 -7 2276 98 0 3 chr21 3760180 3760475 -31147095 + AluSq SINE Alu 1 294 -19 511 257 75 44 chr21 3764006 3764232 -31143338 - LTR33 LTR ERVL -158 363 131 356 186 0 0 chr21 3764439 3764498 -31143072 + MLT1B LTR MaLR 1 59 -408 888 211 0 6 chr21 3764499 3764679 -31142891 + MLT1B LTR MaLR 212 390 0 2223 109 7 0 chr21 3764845 3765148 -31142422 - AluSp SINE Alu -7 306 2 603 288 90 40 chr21 3765384 3765807 -31141763 - L1MDa LINE L1 -4790 1339 896 34 102 0 0 chr21 3765880 3765998 -31141572 + AT_rich Low_complexity Low_complexity 1 118 0 578 318 22 56 chr21 3766014 3766281 -31141289 - L1MDa LINE L1 -5292 827 570 4324 181 19 18 chr21 3766358 3766512 -31141058 - L1MB5 LINE L1 0 6174 6022 2571 118 5 3 chr21 3766512 3766886 -31140684 + THE1C LTR MaLR 1 375 0 4324 181 19 18 chr21 3766886 3767586 -31139984 - L1MB5 LINE L1 -152 6022 5319 22865 145 10 11 chr21 3767582 3772480 -31135090 - L1PA10 LINE L1 -1 6482 1590 2870 82 30 8 chr21 3772480 3772883 -31134687 + MLT2A1 LTR ERVL 3 480 -35 345 59 78 0 chr21 3772938 3772989 -31134581 + MLT2A2 LTR ERVL 399 453 0 4450 225 30 39 chr21 3772990 3774561 -31133009 - L1PA10 LINE L1 -4736 1139 3 3477 241 36 8 chr21 3774558 3775580 -31131990 - L1MB5 LINE L1 -820 5326 4276 189 0 0 0 chr21 3777049 3777070 -31130500 + (T)n Simple_repeat Simple_repeat 1 21 0 183 336 63 28 chr21 3777782 3777925 -31129645 + L2 LINE L2 2627 2774 -540 446 254 8 62 chr21 3779013 3779143 -31128427 + L2 LINE L2 3150 3272 0 10572 119 29 3 chr21 3780298 3782708 -31124862 + L1PA8 LINE L1 3721 6169 -3 990 190 60 154 chr21 3782721 3782820 -31124750 + MLT1A1 LTR MaLR 1 108 -257 2051 138 36 36 chr21 3782820 3783182 -31124388 + THE1B LTR MaLR 3 364 0 990 190 60 154 chr21 3783182 3783518 -31124052 + MLT1A1 LTR MaLR 108 364 -1 2658 162 16 2 chr21 3783737 3784179 -31123391 - MSTB2 LTR MaLR 0 457 1 80 11 0 0 chr21 3784234 3784321 -31123249 + AT_rich Low_complexity Low_complexity 1 87 0 241 230 184 0 chr21 3784978 3785065 -31122505 - MIR SINE MIR -11 251 149 845 199 11 6 chr21 3785849 3786030 -31121540 + MER53 DNA DNA 8 189 0 201 175 0 0 chr21 3786559 3786599 -31120971 + (CA)n Simple_repeat Simple_repeat 2 41 0 359 336 61 23 chr21 3786883 3787014 -31120556 + L2 LINE L2 3136 3271 -1 2243 121 10 0 chr21 3787729 3788035 -31119535 + AluSg SINE Alu 1 309 -1 351 0 0 0 chr21 3788520 3788559 -31119011 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr21 3788558 3788579 -31118991 + (GA)n Simple_repeat Simple_repeat 2 22 0 351 0 0 0 chr21 3789387 3789426 -31118144 + (CA)n Simple_repeat Simple_repeat 2 40 0 188 204 82 20 chr21 3789677 3789726 -31117844 + L2 LINE L2 3220 3271 -1 563 234 118 46 chr21 3790218 3790595 -31116975 - MLT1D LTR MaLR -1 504 53 887 225 38 9 chr21 3790802 3791015 -31116555 - MER20 DNA MER1_type 0 219 1 24 32 0 0 chr21 3791119 3791150 -31116420 + AT_rich Low_complexity Low_complexity 1 31 0 2143 129 0 0 chr21 3791839 3792134 -31115436 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr21 3792134 3792173 -31115397 + AT_rich Low_complexity Low_complexity 1 39 0 491 277 38 19 chr21 3792221 3792380 -31115190 + MARNA DNA Mariner 403 564 -22 716 279 158 0 chr21 3792538 3792760 -31114810 + MIR SINE MIR 3 259 -3 25 51 0 0 chr21 3793557 3793596 -31113974 + AT_rich Low_complexity Low_complexity 1 39 0 3230 230 26 33 chr21 3794307 3795191 -31112379 + L1ME1 LINE L1 5285 6162 -4 2190 126 29 27 chr21 3795448 3795822 -31111748 - THE1C LTR MaLR 0 375 1 390 271 0 58 chr21 3797338 3797493 -31110077 - MER117 DNA MER1_type -47 150 5 206 280 27 27 chr21 3797631 3797706 -31109864 - L2 LINE L2 -12 3260 3186 688 304 92 31 chr21 3797809 3798190 -31109380 + L2 LINE L2 2544 2947 -367 236 342 25 70 chr21 3798316 3798515 -31109055 + L2 LINE L2 3119 3308 -5 209 208 38 38 chr21 3798568 3798621 -31108949 - L2 LINE L2 -93 3220 3168 2188 109 0 0 chr21 3799116 3799410 -31108160 + AluSc SINE Alu 1 294 -15 22 0 0 0 chr21 3799849 3799871 -31107699 + AT_rich Low_complexity Low_complexity 1 22 0 458 252 58 0 chr21 3801699 3801802 -31105768 + MER81 DNA DNA 1 109 -5 23 0 0 0 chr21 3802430 3802453 -31105117 + AT_rich Low_complexity Low_complexity 1 23 0 2585 190 42 2 chr21 3802466 3802965 -31104605 + LTR53 LTR ERVL 1 519 0 555 252 0 0 chr21 3804311 3804470 -31103100 + (CA)n Simple_repeat Simple_repeat 2 160 0 344 368 0 31 chr21 3805966 3806129 -31101441 - MIR SINE MIR -60 202 45 888 223 164 53 chr21 3806131 3806626 -31100944 - MLT1E LTR MaLR -8 585 1 27 29 0 0 chr21 3806635 3806669 -31100901 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 3806941 3806969 -31100601 + AT_rich Low_complexity Low_complexity 1 28 0 278 0 54 0 chr21 3807030 3807067 -31100503 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 183 42 0 0 chr21 3807573 3807597 -31099973 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1933 222 36 53 chr21 3807732 3808255 -31099315 - MER77 LTR ERV1 -39 566 53 214 258 16 32 chr21 3809140 3809202 -31098368 - MER5A DNA MER1_type 0 189 129 256 304 39 49 chr21 3809197 3809299 -31098271 + MER5A DNA MER1_type 88 188 -1 455 307 21 0 chr21 3809578 3809718 -31097852 - MIR SINE MIR -11 251 109 275 266 0 0 chr21 3810001 3810065 -31097505 - MIR SINE MIR -12 250 187 1642 164 3 72 chr21 3810150 3810485 -31097085 + AluJb SINE Alu 1 312 0 276 286 41 31 chr21 3813403 3813501 -31094069 - MIR3 SINE MIR -6 202 104 364 307 58 22 chr21 3814236 3814373 -31093197 + L2 LINE L2 3125 3266 -6 194 342 125 8 chr21 3815918 3816038 -31091532 + L2 LINE L2 2610 2743 -571 23 33 0 0 chr21 3816983 3817013 -31090557 + AT_rich Low_complexity Low_complexity 1 30 0 955 191 11 6 chr21 3818179 3818357 -31089213 - MER58A DNA MER1_type 0 224 46 948 305 61 27 chr21 3819278 3819917 -31087653 - L2 LINE L2 -5 3308 2636 1187 212 59 28 chr21 3819917 3820271 -31087299 - MLT1A1 LTR MaLR 0 365 1 948 305 61 27 chr21 3820271 3820376 -31087194 - L2 LINE L2 -677 2636 2536 21 71 0 0 chr21 3820757 3820799 -31086771 + AT_rich Low_complexity Low_complexity 1 42 0 930 261 100 97 chr21 3820826 3821392 -31086178 - MLT1F1 LTR MaLR 0 567 2 4386 152 57 10 chr21 3822014 3822543 -31085027 - L1MB2 LINE L1 -3 6168 5586 1914 139 30 3 chr21 3822543 3822838 -31084732 - AluSx SINE Alu -9 303 1 4386 152 57 10 chr21 3822838 3823122 -31084448 - L1MB2 LINE L1 -585 5586 5317 468 86 0 74 chr21 3823150 3823175 -31084395 - L1PB4 LINE L1 -1 6155 6130 2113 145 112 20 chr21 3823175 3823567 -31084003 + MSTA LTR MaLR 1 428 0 468 86 0 74 chr21 3823567 3823622 -31083948 - L1PB4 LINE L1 -26 6130 6081 727 167 21 62 chr21 3823622 3823814 -31083756 - L1MB2 LINE L1 -815 5331 5148 23 0 0 0 chr21 3824180 3824203 -31083367 + AT_rich Low_complexity Low_complexity 1 23 0 248 321 146 15 chr21 3824662 3824949 -31082621 - L2 LINE L2 0 3313 2978 219 341 54 51 chr21 3824986 3825300 -31082270 - L2 LINE L2 -349 2965 2651 1022 181 33 58 chr21 3825302 3825545 -31082025 + MSTD LTR MaLR 3 239 -157 959 195 5 40 chr21 3825581 3825781 -31081789 + MSTD LTR MaLR 204 396 0 306 284 115 58 chr21 3825958 3826219 -31081351 - L2 LINE L2 -911 2403 2128 1008 140 28 0 chr21 3827783 3827962 -31079608 + L1MA5A LINE L1 6110 6293 -4 189 0 0 0 chr21 3827962 3827983 -31079587 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 21 36 0 0 chr21 3830074 3830102 -31077468 + AT_rich Low_complexity Low_complexity 1 28 0 247 266 165 0 chr21 3830215 3830294 -31077276 - L2 LINE L2 -1 3312 3221 25 51 0 0 chr21 3831751 3831790 -31075780 + AT_rich Low_complexity Low_complexity 1 39 0 186 219 48 105 chr21 3831947 3832052 -31075518 + L2 LINE L2 2545 2643 -671 27 49 0 0 chr21 3833537 3833578 -31073992 + AT_rich Low_complexity Low_complexity 1 41 0 210 71 0 0 chr21 3833951 3833979 -31073591 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 342 233 133 0 chr21 3834505 3834625 -31072945 + L1ME3 LINE L1 6025 6160 -2 1348 13 0 0 chr21 3835756 3835910 -31071660 + L1PA5 LINE L1 5990 6143 -11 279 0 0 0 chr21 3835911 3835942 -31071628 + (TA)n Simple_repeat Simple_repeat 1 31 0 743 260 40 9 chr21 3836153 3836380 -31071190 + L1ME LINE L1 5545 5778 -343 2387 120 10 34 chr21 3836731 3837115 -31070455 - THE1C LTR MaLR 0 375 1 458 61 15 0 chr21 3837185 3837251 -31070319 + (TG)n Simple_repeat Simple_repeat 2 68 0 1602 123 4 4 chr21 3837662 3837889 -31069681 + AluSg/x SINE Alu 72 298 -12 7048 172 19 19 chr21 3838967 3840208 -31067362 - MER52A LTR ERV1 0 1755 515 783 256 45 10 chr21 3840244 3840443 -31067127 - MLT1A1 LTR MaLR -156 209 4 21 0 0 0 chr21 3840615 3840636 -31066934 + AT_rich Low_complexity Low_complexity 1 21 0 1266 180 66 11 chr21 3841343 3841615 -31065955 + LTR1 LTR ERV1 1 287 -498 2672 97 24 0 chr21 3841620 3841990 -31065580 + LTR1 LTR ERV1 407 785 0 21 36 0 0 chr21 3845224 3845252 -31062318 + AT_rich Low_complexity Low_complexity 1 28 0 444 310 84 0 chr21 3846038 3846193 -31061377 + MIR3 SINE MIR 40 207 -1 300 161 25 136 chr21 3846774 3846892 -31060678 + L1ME1 LINE L1 1332 1436 -5423 1849 174 0 6 chr21 3847013 3847324 -31060246 + AluSx SINE Alu 1 309 -3 539 279 36 40 chr21 3847408 3847630 -31059940 + L1ME1 LINE L1 2895 3115 -4023 1844 126 41 80 chr21 3847655 3848044 -31059526 + THE1C LTR MaLR 2 375 0 463 209 135 0 chr21 3848068 3848216 -31059354 - L1M4 LINE L1 -820 5326 5159 2304 241 67 23 chr21 3848304 3848514 -31059056 + L1ME1 LINE L1 6217 6416 -561 1463 178 68 44 chr21 3848514 3848880 -31058690 + THE1C LTR MaLR 1 375 0 2304 241 67 23 chr21 3848880 3849398 -31058172 + L1ME1 LINE L1 6416 6977 0 689 266 55 68 chr21 3849586 3849894 -31057676 - MER68 LTR ERV1 -114 448 145 427 316 0 0 chr21 3850739 3850872 -31056698 + L1MC4a LINE L1 3997 4129 -2017 189 0 0 0 chr21 3851836 3851857 -31055713 + (TA)n Simple_repeat Simple_repeat 1 21 0 2312 236 101 20 chr21 3851953 3852689 -31054881 - LTR50 LTR ERVL 0 795 1 28 48 0 0 chr21 3853143 3853185 -31054385 + AT_rich Low_complexity Low_complexity 1 42 0 1173 150 35 0 chr21 3853296 3853496 -31054074 - L1PA12 LINE L1 -1 6167 5961 324 270 94 61 chr21 3853588 3853871 -31053699 + L1MC4a LINE L1 5567 5856 -271 218 182 23 0 chr21 3853878 3853922 -31053648 - L2 LINE L2 0 3272 3228 204 40 0 0 chr21 3853990 3854015 -31053555 + (CA)n Simple_repeat Simple_repeat 2 26 0 392 315 94 14 chr21 3854871 3855084 -31052486 + L1ME LINE L1 5482 5711 -410 518 288 89 57 chr21 3855169 3855629 -31051941 + L2 LINE L2 2766 3301 -12 557 271 39 72 chr21 3855982 3856189 -31051381 - MIR SINE MIR 0 262 63 189 289 0 0 chr21 3858118 3858163 -31049407 - MIR SINE MIR 0 262 218 255 93 0 0 chr21 3858389 3858432 -31049138 + (T)n Simple_repeat Simple_repeat 1 43 0 4763 91 20 0 chr21 3858823 3859486 -31048084 + L1PA10 LINE L1 5488 6163 -5 738 201 104 0 chr21 3859764 3859928 -31047642 + MER63A DNA MER1_type 1 181 -29 260 304 107 0 chr21 3860021 3860133 -31047437 - LTR33A LTR ERVL -345 178 55 213 292 15 15 chr21 3860288 3860353 -31047217 + L2 LINE L2 3208 3272 0 736 236 30 0 chr21 3860970 3861135 -31046435 - MER67A LTR ERV1 0 543 374 5503 177 39 15 chr21 3861135 3861597 -31045973 + L1MA3 LINE L1 18 467 -7098 2149 117 0 10 chr21 3861597 3861896 -31045674 - AluSq SINE Alu -17 296 1 5503 177 39 15 chr21 3861896 3862711 -31044859 + L1MA3 LINE L1 467 1704 -5861 10978 151 22 6 chr21 3862710 3865376 -31042194 + L1MA3 LINE L1 4674 7383 -341 304 345 0 36 chr21 3865675 3865814 -31041756 + L1MC/D LINE L1 5255 5388 -2420 596 311 44 16 chr21 3865829 3866012 -31041558 + L1MC/D LINE L1 5450 5637 -2171 1092 176 106 119 chr21 3867409 3867921 -31039649 - MLT1D LTR MaLR 0 505 1 405 267 0 0 chr21 3868057 3868143 -31039427 - MER58B DNA MER1_type 0 341 256 1746 222 64 35 chr21 3868146 3868632 -31038938 - MLT1D LTR MaLR -5 500 1 489 71 12 59 chr21 3868762 3868847 -31038723 - L1PA11 LINE L1 0 6174 6094 376 151 28 94 chr21 3869666 3869772 -31037798 - LTR33A LTR ERVL -2 521 423 1330 192 34 44 chr21 3869907 3870204 -31037366 - AluJo SINE Alu -17 295 2 329 254 88 18 chr21 3870378 3870492 -31037078 - LTR50 LTR ERVL -569 226 105 1333 99 6 0 chr21 3870621 3870793 -31036777 + AluSq SINE Alu 1 173 -140 23 0 0 0 chr21 3871682 3871705 -31035865 + AT_rich Low_complexity Low_complexity 1 23 0 286 75 0 0 chr21 3871907 3871947 -31035623 - L1PA3 LINE L1 -2702 3444 3405 16458 21 0 0 chr21 3871947 3874630 -31032940 + L1PA3 LINE L1 3468 6150 -5 744 241 91 91 chr21 3875148 3875570 -31032000 + MER34 LTR ERV1 4 428 -114 3035 157 33 62 chr21 3875570 3876200 -31031370 + LTR9 LTR ERV1 1 612 0 744 241 91 91 chr21 3876200 3876316 -31031254 + MER34 LTR ERV1 427 542 0 2373 122 145 94 chr21 3876518 3877147 -31030423 - MER4A LTR ERV1 -3 661 1 1569 290 20 46 chr21 3877334 3877570 -31030000 + MLT2F LTR ERVL 1 242 -421 1389 234 102 46 chr21 3877570 3878180 -31029390 - LTR48B LTR ERV1 0 644 1 1569 290 20 46 chr21 3878180 3878547 -31029023 + MLT2F LTR ERVL 242 588 -75 2247 214 48 28 chr21 3878577 3879248 -31028322 - MER21B LTR ERV1 -4 859 127 373 267 21 17 chr21 3879240 3879395 -31028175 - MER21B LTR ERV1 -400 205 11 27 0 0 0 chr21 3879472 3879499 -31028071 + AT_rich Low_complexity Low_complexity 1 27 0 1463 172 11 15 chr21 3879544 3879806 -31027764 - MLT1B LTR MaLR 0 390 130 1426 206 58 7 chr21 3879812 3880186 -31027384 + LTR32 LTR ERVL 17 471 0 599 172 82 0 chr21 3880186 3880306 -31027264 - MLT1B LTR MaLR -260 130 1 1696 204 93 80 chr21 3881301 3882074 -31025496 + L1MC5 LINE L1 6858 7640 -321 228 318 22 73 chr21 3882109 3882243 -31025327 - L2 LINE L2 -1018 2296 2172 827 190 76 47 chr21 3882243 3882454 -31025116 - MER20 DNA MER1_type -2 217 1 228 318 22 73 chr21 3882454 3882498 -31025072 - L2 LINE L2 -1142 2172 2127 197 364 39 0 chr21 3882547 3882624 -31024946 + MIR SINE MIR 107 186 -76 1765 181 29 39 chr21 3883229 3883643 -31023927 - L1MB7 LINE L1 -9 6175 5766 981 238 91 11 chr21 3883645 3883910 -31023660 + MLT1E2 LTR MaLR 341 626 0 390 42 0 0 chr21 3883933 3883981 -31023589 + (TG)n Simple_repeat Simple_repeat 1 48 0 1477 185 120 43 chr21 3885561 3885929 -31021641 - MSTD LTR MaLR 0 396 1 222 226 20 20 chr21 3886766 3886868 -31020702 + CT-rich Low_complexity Low_complexity 4 105 0 1906 98 33 4 chr21 3887461 3887737 -31019833 + L1PA11 LINE L1 5884 6167 -7 24 0 0 0 chr21 3887778 3887802 -31019768 + AT_rich Low_complexity Low_complexity 1 24 0 2442 61 0 0 chr21 3888162 3888456 -31019114 + AluSp SINE Alu 18 311 -2 736 293 44 20 chr21 3888572 3888821 -31018749 - MIR SINE MIR -1 261 7 2859 140 29 2 chr21 3888959 3889451 -31018119 + L1MA9 LINE L1 5808 6312 0 1266 157 5 0 chr21 3889838 3890042 -31017528 + MER2 DNA MER2_type 2 206 -138 27 0 0 0 chr21 3890050 3890077 -31017493 + AT_rich Low_complexity Low_complexity 1 27 0 345 290 136 51 chr21 3890208 3890384 -31017186 + MIR SINE MIR 14 204 -58 267 31 0 0 chr21 3890446 3890478 -31017092 + (TA)n Simple_repeat Simple_repeat 2 33 0 2962 211 80 44 chr21 3891053 3891921 -31015649 + L1ME3A LINE L1 5272 6170 0 21 36 0 0 chr21 3892081 3892109 -31015461 + AT_rich Low_complexity Low_complexity 1 28 0 904 241 54 5 chr21 3892252 3892455 -31015115 - MER20 DNA MER1_type 0 219 7 683 196 132 5 chr21 3892873 3893077 -31014493 - MER33 DNA MER1_type -93 231 2 291 218 36 45 chr21 3893193 3893303 -31014267 + L1M4 LINE L1 3717 3825 -2321 1883 150 44 0 chr21 3893421 3893715 -31013855 - AluSx SINE Alu -3 309 3 25 0 0 0 chr21 3893884 3893909 -31013661 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 3894009 3894044 -31013526 + AT_rich Low_complexity Low_complexity 1 35 0 3307 92 20 2 chr21 3894257 3894702 -31012868 + MLT2A2 LTR ERVL 1 453 0 24753 78 18 19 chr21 3894702 3900369 -31007201 + HERVL-A2 LTR ERVL 1 5654 0 2882 92 37 48 chr21 3900370 3900827 -31006743 + MLT2A2 LTR ERVL 2 453 0 21 36 0 0 chr21 3900848 3900876 -31006694 + AT_rich Low_complexity Low_complexity 1 28 0 183 139 0 0 chr21 3901236 3901272 -31006298 + (T)n Simple_repeat Simple_repeat 1 36 0 3839 145 34 32 chr21 3901510 3902226 -31005344 - LTR62 LTR ERVK 0 719 3 2543 72 0 0 chr21 3903203 3903510 -31004060 + AluY SINE Alu 3 309 -2 375 113 0 0 chr21 3903707 3903769 -31003801 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 233 289 79 13 chr21 3904136 3904212 -31003358 + L2 LINE L2 3150 3230 -42 1444 202 63 95 chr21 3904857 3905211 -31002359 + MER39 LTR ERV1 219 554 -153 2192 136 0 0 chr21 3905211 3905520 -31002050 - AluSx SINE Alu -1 311 3 1444 202 63 95 chr21 3905520 3905670 -31001900 + MER39 LTR ERV1 554 707 0 1657 199 0 7 chr21 3906443 3906750 -31000820 - AluJb SINE Alu -7 305 1 183 284 75 15 chr21 3907606 3907673 -30999897 + MIR SINE MIR 69 139 -69 1813 144 23 30 chr21 3907861 3908166 -30999404 - AluSx SINE Alu -9 303 1 1842 127 65 4 chr21 3908650 3908926 -30998644 - AluSx SINE Alu -19 293 1 189 0 0 0 chr21 3909405 3909426 -30998144 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1890 146 11 0 chr21 3909426 3909701 -30997869 - AluSq SINE Alu -32 281 4 209 339 39 24 chr21 3909868 3909995 -30997575 - MIR SINE MIR -123 139 11 21 36 0 0 chr21 3910018 3910046 -30997524 + AT_rich Low_complexity Low_complexity 1 28 0 884 228 53 30 chr21 3911169 3911432 -30996138 + MER39 LTR ERV1 341 609 -98 9855 135 12 21 chr21 3911433 3914173 -30993397 + L1MA1 LINE L1 3579 6295 -7 25 31 0 0 chr21 3914173 3914205 -30993365 + AT_rich Low_complexity Low_complexity 1 32 0 279 244 81 0 chr21 3914213 3914299 -30993271 + MER34B LTR ERV1 473 565 0 226 355 65 0 chr21 3914320 3914413 -30993157 + L2 LINE L2 3174 3272 0 2288 79 3 22 chr21 3914568 3914911 -30992659 - AluY SINE Alu 0 337 1 6178 80 0 5 chr21 3914935 3915281 -30992289 - L1PB1 LINE L1 0 6151 5805 327 85 0 0 chr21 3915281 3915328 -30992242 + (TG)n Simple_repeat Simple_repeat 1 47 0 6178 80 0 5 chr21 3915328 3915929 -30991641 - L1PB1 LINE L1 -346 5805 5187 1373 247 9 0 chr21 3915934 3916278 -30991292 + L1PB1 LINE L1 4833 5179 -967 1231 174 37 30 chr21 3916400 3916670 -30990900 + MLT2D LTR ERVL 1 272 -142 30 45 0 0 chr21 3918364 3918408 -30989162 + AT_rich Low_complexity Low_complexity 1 44 0 2312 163 32 12 chr21 3919183 3919589 -30987981 + MLT2C2 LTR ERVL 3 416 -48 348 43 0 0 chr21 3919594 3919640 -30987930 + (TC)n Simple_repeat Simple_repeat 1 46 0 453 19 0 0 chr21 3919640 3919694 -30987876 + (TG)n Simple_repeat Simple_repeat 2 55 0 367 216 0 43 chr21 3923646 3923831 -30983739 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 67 55 0 0 chr21 3923838 3923947 -30983623 + AT_rich Low_complexity Low_complexity 1 109 0 960 143 87 6 chr21 3923947 3924108 -30983462 - AluSq SINE Alu -138 175 2 8036 215 40 44 chr21 3924496 3926671 -30980899 + L1MC1 LINE L1 24 2378 -4229 541 259 77 95 chr21 3926671 3927072 -30980498 + MSTD LTR MaLR 1 394 -2 8036 215 40 44 chr21 3927072 3927428 -30980142 + L1MC1 LINE L1 2378 2734 -3873 9272 202 43 23 chr21 3927563 3928236 -30979334 + L1MC1 LINE L1 2866 3524 -3089 2516 50 0 0 chr21 3928236 3928536 -30979034 + AluY SINE Alu 2 301 -10 9272 202 43 23 chr21 3928536 3930303 -30977267 + L1MC1 LINE L1 3524 5254 -1359 1299 142 41 5 chr21 3930303 3930522 -30977048 - MER30 DNA MER1_type -1 229 3 9272 202 43 23 chr21 3930522 3931102 -30976468 + L1MC1 LINE L1 5254 5957 -656 2877 177 60 6 chr21 3931102 3931581 -30975989 + MLT2B3 LTR ERVL 3 514 -40 723 10 31 0 chr21 3931581 3931677 -30975893 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 2877 177 60 6 chr21 3931677 3931718 -30975852 + MLT2B3 LTR ERVL 514 551 -3 9272 202 43 23 chr21 3931718 3932024 -30975546 + L1MC1 LINE L1 5957 6255 -358 611 200 0 0 chr21 3932025 3932130 -30975440 + U6 snRNA snRNA 2 106 -1 1116 174 9 40 chr21 3932134 3932375 -30975195 + L1MC1 LINE L1 6396 6624 0 211 196 87 0 chr21 3933183 3933229 -30974341 + L2 LINE L2 3263 3312 -1 1834 178 0 13 chr21 3935069 3935373 -30972197 - AluJo SINE Alu -12 300 1 219 310 99 7 chr21 3935430 3935572 -30971998 - MIR SINE MIR -2 260 106 2270 111 0 13 chr21 3936777 3937093 -30970477 - AluSx SINE Alu 0 312 1 2198 100 0 0 chr21 3937177 3937466 -30970104 - AluSc SINE Alu 0 309 21 322 319 0 18 chr21 3937504 3937617 -30969953 - MER34 LTR ERV1 -431 111 1 1997 174 11 19 chr21 3938619 3938987 -30968583 - MLT1A1 LTR MaLR 0 365 1 2213 111 74 11 chr21 3941003 3941356 -30966214 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr21 3941604 3941632 -30965938 + AT_rich Low_complexity Low_complexity 1 28 0 1626 184 0 14 chr21 3943045 3943327 -30964243 + AluJb SINE Alu 1 278 -34 393 149 0 0 chr21 3943327 3943394 -30964176 + (CA)n Simple_repeat Simple_repeat 2 68 0 351 113 0 0 chr21 3943397 3943450 -30964120 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 241 238 159 0 chr21 3943606 3943669 -30963901 + MIR SINE MIR 72 144 -118 25 65 0 0 chr21 3944299 3944345 -30963225 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 3944709 3944731 -30962839 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr21 3946195 3946234 -30961336 + (CA)n Simple_repeat Simple_repeat 2 40 0 393 39 0 0 chr21 3946233 3946284 -30961286 + (GA)n Simple_repeat Simple_repeat 2 52 0 423 0 0 0 chr21 3946995 3947042 -30960528 + (TG)n Simple_repeat Simple_repeat 1 47 0 2153 135 0 0 chr21 3947366 3947670 -30959900 + AluSx SINE Alu 1 304 -8 4524 158 38 11 chr21 3947969 3948934 -30958636 + L1MB3 LINE L1 5115 6101 -82 864 146 0 0 chr21 3948934 3949064 -30958506 + FRAM SINE Alu 28 157 -19 23 42 0 21 chr21 3949064 3949075 -30958495 + AT_rich Low_complexity Low_complexity 1 11 -36 402 143 71 0 chr21 3949075 3949159 -30958411 + L1MB3 LINE L1 6094 6183 0 23 42 0 21 chr21 3949159 3949195 -30958375 + AT_rich Low_complexity Low_complexity 11 47 0 1855 142 161 11 chr21 3951148 3951520 -30956050 - MSTA LTR MaLR 0 428 1 289 349 18 9 chr21 3951547 3951656 -30955914 - L3 LINE CR1 -30 1547 1438 22179 73 6 1 chr21 3951733 3954573 -30952997 - HERVL-A1 LTR ERVL -2798 2856 3 2864 86 19 62 chr21 3954575 3955039 -30952531 - MLT2A1 LTR ERVL 0 444 1 883 103 15 0 chr21 3955070 3955206 -30952364 - L1MB7 LINE L1 -9 6175 6038 3209 126 68 18 chr21 3956342 3956889 -30950681 + MER4B LTR ERV1 37 610 0 1955 141 0 0 chr21 3958034 3958360 -30949210 - AluJb SINE Alu 0 326 1 960 88 13 6 chr21 3958440 3958599 -30948971 + (TTCC)n Simple_repeat Simple_repeat 2 161 0 195 156 178 0 chr21 3959972 3960017 -30947553 + MIR SINE MIR 210 262 0 318 247 32 11 chr21 3960116 3960209 -30947361 - MER112 DNA MER1_type -33 227 133 1971 205 74 13 chr21 3960669 3961143 -30946427 - MLT1D LTR MaLR 0 505 3 23 0 0 0 chr21 3962135 3962158 -30945412 + AT_rich Low_complexity Low_complexity 1 23 0 276 325 106 0 chr21 3962451 3962574 -30944996 + MIR SINE MIR 114 249 -13 1994 117 3 29 chr21 3962633 3962940 -30944630 + AluSx SINE Alu 7 305 -7 2236 96 3 0 chr21 3963104 3963397 -30944173 - AluY SINE Alu -17 294 1 219 217 22 0 chr21 3963602 3963648 -30943922 + (TA)n Simple_repeat Simple_repeat 2 48 0 2658 229 31 21 chr21 3963731 3964407 -30943163 + L1MD3 LINE L1 7313 7995 0 2298 78 7 3 chr21 3964448 3964743 -30942827 - AluY SINE Alu -15 296 1 749 282 81 44 chr21 3964956 3965555 -30942015 + L1ME3A LINE L1 5296 5951 -219 1984 168 11 38 chr21 3965592 3965961 -30941609 + MLT1A1 LTR MaLR 1 359 -6 181 300 153 60 chr21 3966816 3966966 -30940604 - L2 LINE L2 -620 2694 2531 204 400 92 0 chr21 3968112 3968242 -30939328 + L2 LINE L2 3122 3263 -9 240 305 12 0 chr21 3969351 3969433 -30938137 + (TA)n Simple_repeat Simple_repeat 2 84 0 2430 33 0 0 chr21 3970495 3970770 -30936800 - AluY SINE Alu -16 295 21 619 277 59 46 chr21 3972083 3972321 -30935249 - MIR SINE MIR -7 255 15 348 318 42 50 chr21 3972377 3972616 -30934954 - L1ME LINE L1 -404 5760 5524 2166 125 0 0 chr21 3972944 3973248 -30934322 - AluSx SINE Alu -8 304 1 30 27 0 0 chr21 3973600 3973637 -30933933 + AT_rich Low_complexity Low_complexity 1 37 0 305 315 92 33 chr21 3973720 3973904 -30933666 - MIR SINE MIR -18 244 50 2321 61 0 0 chr21 3974085 3974364 -30933206 - AluY SINE Alu -32 279 1 3078 128 0 0 chr21 3975212 3975682 -30931888 - L1PB1 LINE L1 -4 6147 5678 1654 122 15 0 chr21 3976609 3976879 -30930691 + L1MA2 LINE L1 6031 6304 0 1134 175 41 26 chr21 3977011 3977280 -30930290 - MER97c DNA MER1_type? -387 703 431 378 0 0 0 chr21 3977284 3977326 -30930244 + (TG)n Simple_repeat Simple_repeat 2 43 0 1021 197 59 16 chr21 3977351 3977605 -30929965 - MER97c DNA MER1_type? -758 332 68 1801 146 101 5 chr21 3978262 3978661 -30928909 + LTR23 LTR ERV1 1 467 0 1487 163 19 19 chr21 3979465 3979729 -30927841 + AluJo SINE Alu 6 269 -43 37 23 0 0 chr21 3979739 3979783 -30927787 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr21 3981041 3981070 -30926500 + AT_rich Low_complexity Low_complexity 1 29 0 243 227 91 30 chr21 3981935 3982001 -30925569 - MIR SINE MIR -111 151 82 430 187 1 49 chr21 3982004 3982342 -30925228 + AluJo SINE Alu 1 303 -9 1718 167 0 56 chr21 3982490 3982813 -30924757 + AluJo SINE Alu 1 305 -7 1976 174 40 0 chr21 3982851 3983202 -30924368 + MLT1A1 LTR MaLR 1 365 0 1198 198 28 0 chr21 3983455 3983672 -30923898 - AluJo SINE Alu -21 291 69 1542 216 0 0 chr21 3984240 3984536 -30923034 - AluJo SINE Alu -11 301 6 21 0 0 0 chr21 3985165 3985186 -30922384 + AT_rich Low_complexity Low_complexity 1 21 0 333 47 0 0 chr21 3985311 3985354 -30922216 + (CA)n Simple_repeat Simple_repeat 2 44 0 2360 77 3 19 chr21 3986671 3986981 -30920589 + AluSp SINE Alu 1 305 -8 2227 107 7 0 chr21 3987906 3988214 -30919356 - AluSx SINE Alu 0 312 3 4665 67 17 33 chr21 3989931 3990574 -30916996 - SVA Other Other 0 1386 754 2276 70 0 14 chr21 3991243 3991554 -30916016 - AluY SINE Alu 0 307 1 1879 153 0 0 chr21 3991556 3991850 -30915720 - AluSx SINE Alu -18 294 1 1391 155 33 19 chr21 3993487 3993804 -30913766 + MLT1A1 LTR MaLR 11 365 0 573 255 2 14 chr21 3993809 3993974 -30913596 - MLT1B LTR MaLR 0 390 251 573 232 12 54 chr21 3994437 3994644 -30912926 + MLT1F LTR MaLR 1 185 -357 808 179 123 49 chr21 3994677 3994907 -30912663 + MLT1F LTR MaLR 320 540 -2 1667 214 50 60 chr21 3995967 3996452 -30911118 + L1MC4 LINE L1 6765 7244 -798 31 0 0 0 chr21 3996524 3996555 -30911015 + AT_rich Low_complexity Low_complexity 1 31 0 333 0 0 0 chr21 3996576 3996613 -30910957 + (CA)n Simple_repeat Simple_repeat 2 38 0 1648 206 52 3 chr21 3996613 3996939 -30910631 - MLT2C1 LTR ERVL -55 342 1 377 248 174 0 chr21 3996939 3997048 -30910522 + L1MC4 LINE L1 7257 7384 -658 1370 238 58 69 chr21 3997057 3997246 -30910324 + L1MC4 LINE L1 7438 7627 -415 2167 102 7 7 chr21 3997246 3997539 -30910031 + AluSg SINE Alu 6 298 -12 1370 238 58 69 chr21 3997539 3997947 -30909623 + L1MC4 LINE L1 7627 8029 -13 1233 183 9 9 chr21 3998436 3998666 -30908904 - AluJb SINE Alu -5 307 78 24 0 0 0 chr21 3999496 3999520 -30908050 + AT_rich Low_complexity Low_complexity 1 24 0 209 267 0 17 chr21 4000625 4000685 -30906885 + L2 LINE L2 3255 3313 0 451 345 18 85 chr21 4001359 4001806 -30905764 - L2 LINE L2 -49 3223 2807 23 0 0 0 chr21 4002208 4002231 -30905339 + AT_rich Low_complexity Low_complexity 1 23 0 390 277 30 0 chr21 4002351 4002452 -30905118 + MER5A DNA MER1_type 9 112 -77 1830 207 47 51 chr21 4003108 4003615 -30903955 - MLT1D LTR MaLR 0 505 1 357 316 59 53 chr21 4004405 4004898 -30902672 + L2 LINE L2 1613 2108 -1206 1903 208 11 0 chr21 4004934 4005295 -30902275 + MLT1A1 LTR MaLR 1 365 0 306 27 0 0 chr21 4006075 4006112 -30901458 - AluS SINE Alu -218 85 49 483 101 13 0 chr21 4006784 4006863 -30900707 - MADE1 DNA Mariner 0 80 1 2148 135 0 0 chr21 4007170 4007521 -30900049 - AluSx SINE Alu 0 351 1 820 250 48 0 chr21 4007659 4007847 -30899723 + MER20 DNA MER1_type 22 218 -1 1559 208 16 13 chr21 4008172 4008536 -30899034 + AluJo SINE Alu 3 367 0 260 189 14 0 chr21 4009269 4009343 -30898227 + (CCA)n Simple_repeat Simple_repeat 1 75 0 3959 187 31 23 chr21 4010115 4010896 -30896674 - LTR39 LTR ERV1 -7 787 1 602 51 13 0 chr21 4010955 4011034 -30896536 - MADE1 DNA Mariner 0 80 1 5083 165 47 18 chr21 4012500 4013602 -30893968 + L1MC2 LINE L1 5200 6332 -12 8231 84 40 18 chr21 4014946 4016892 -30890678 + L1PA7 LINE L1 4187 6153 -1 34 24 0 0 chr21 4017058 4017099 -30890471 + AT_rich Low_complexity Low_complexity 1 41 0 1539 252 66 55 chr21 4017161 4017240 -30890330 - L2 LINE L2 -910 2404 2327 2580 98 13 16 chr21 4017240 4017616 -30889954 - THE1C LTR MaLR 0 375 1 1539 252 66 55 chr21 4017616 4018367 -30889203 - L2 LINE L2 -987 2327 1458 428 226 89 42 chr21 4019631 4019799 -30887771 + L1MCa LINE L1 157 332 -6232 832 296 58 4 chr21 4019799 4020056 -30887514 + L1MCa LINE L1 171 441 -5604 792 267 43 19 chr21 4020267 4020373 -30887197 + L1MCa LINE L1 570 672 -5373 2647 146 19 9 chr21 4020373 4020797 -30886773 + MSTC LTR MaLR 1 428 0 792 267 43 19 chr21 4020797 4020948 -30886622 + L1MCa LINE L1 672 833 -5212 1680 209 7 27 chr21 4020963 4021370 -30886200 + L1MCa LINE L1 895 1293 -5271 373 299 90 28 chr21 4022202 4022346 -30885224 + MER5B DNA MER1_type 26 178 0 201 39 0 0 chr21 4022414 4022440 -30885130 + (CA)n Simple_repeat Simple_repeat 2 27 0 243 125 0 0 chr21 4022440 4022480 -30885090 + (TC)n Simple_repeat Simple_repeat 1 40 0 2110 102 85 20 chr21 4022863 4023205 -30884365 + THE1B LTR MaLR 1 364 0 2925 113 7 9 chr21 4023435 4023876 -30883694 + L1PA16 LINE L1 5718 6157 -9 2101 137 0 0 chr21 4023897 4024189 -30883381 + AluSx SINE Alu 1 292 -20 344 188 0 50 chr21 4024189 4024269 -30883301 + L1MC4 LINE L1 6617 6692 -1350 333 0 0 0 chr21 4024270 4024307 -30883263 + (GA)n Simple_repeat Simple_repeat 2 38 0 699 243 90 31 chr21 4025571 4025793 -30881777 - MIR SINE MIR -10 252 18 251 337 48 0 chr21 4025788 4025871 -30881699 + MER5A DNA MER1_type 9 95 -94 2238 95 0 0 chr21 4026080 4026386 -30881184 + AluSx SINE Alu 2 307 0 483 156 0 0 chr21 4026400 4026477 -30881093 + U13 snRNA snRNA 1 77 -27 504 0 0 0 chr21 4026678 4026734 -30880836 + (CA)n Simple_repeat Simple_repeat 2 57 0 751 244 13 0 chr21 4026746 4026902 -30880668 - FAM SINE Alu -17 158 1 5105 146 19 3 chr21 4027856 4028712 -30878858 - L1MA4 LINE L1 -24 6276 5408 828 134 21 70 chr21 4028752 4028938 -30878632 + L1M1 LINE L1 5254 5430 -870 1747 188 7 3 chr21 4029799 4030103 -30877467 + AluJo SINE Alu 1 305 -7 1864 173 7 0 chr21 4030221 4030528 -30877042 + AluJo SINE Alu 1 309 -3 2222 113 3 3 chr21 4030670 4030979 -30876591 - AluSx SINE Alu -3 309 1 21 57 0 0 chr21 4031966 4032001 -30875569 + AT_rich Low_complexity Low_complexity 1 35 0 342 0 0 0 chr21 4032120 4032158 -30875412 + (TG)n Simple_repeat Simple_repeat 2 39 0 2397 67 3 3 chr21 4032749 4033047 -30874523 + AluSp SINE Alu 1 298 -15 210 277 32 24 chr21 4033378 4033463 -30874107 + MER5B DNA MER1_type 47 143 -46 4877 115 1 6 chr21 4035902 4036635 -30870935 + L1PA14 LINE L1 5430 6159 -2 2231 105 0 0 chr21 4036829 4037115 -30870455 - AluY SINE Alu -25 286 1 196 200 36 36 chr21 4037395 4037450 -30870120 + MIR3 SINE MIR 3 57 -151 417 86 129 0 chr21 4037710 4037780 -30869790 + MADE1 DNA Mariner 2 80 0 2188 181 16 41 chr21 4037796 4037980 -30869590 + MSTB1 LTR MaLR 1 188 -244 2269 92 3 16 chr21 4037980 4038295 -30869275 - AluY SINE Alu 0 311 1 2188 181 16 41 chr21 4038295 4038553 -30869017 + MSTB1 LTR MaLR 188 432 0 23 0 0 0 chr21 4038571 4038594 -30868976 + AT_rich Low_complexity Low_complexity 1 23 0 1140 212 89 43 chr21 4039020 4039412 -30868158 - Charlie1 DNA MER1_type 0 2761 2352 3075 200 7 2 chr21 4039526 4040137 -30867433 - MSTB1-int LTR MaLR -1037 614 1 2348 142 58 22 chr21 4040137 4040554 -30867016 - MSTB1 LTR MaLR 0 432 1 503 295 74 41 chr21 4040563 4040807 -30866763 + MIR SINE MIR 2 253 -9 2129 242 78 5 chr21 4042029 4042629 -30864941 + LTR48B LTR ERV1 1 644 0 223 96 231 0 chr21 4043084 4043136 -30864434 - MIR SINE MIR -127 135 72 1666 197 31 31 chr21 4043730 4044120 -30863450 + MLT1B LTR MaLR 1 390 0 1924 130 7 7 chr21 4044462 4044761 -30862809 - AluSx SINE Alu -13 299 1 401 188 0 38 chr21 4044922 4045002 -30862568 + FLAM_A SINE Alu 17 93 -49 1568 203 7 62 chr21 4045199 4045618 -30861952 - MSTD LTR MaLR 0 396 1 23 0 0 0 chr21 4047573 4047596 -30859974 + GC_rich Low_complexity Low_complexity 1 23 0 200 181 0 83 chr21 4047627 4047699 -30859871 + G-rich Low_complexity Low_complexity 4 69 0 249 33 0 0 chr21 4048100 4048130 -30859440 + (CCG)n Simple_repeat Simple_repeat 3 32 0 26 30 0 0 chr21 4048245 4048278 -30859292 + GC_rich Low_complexity Low_complexity 1 33 0 267 133 0 0 chr21 4048700 4048745 -30858825 + (T)n Simple_repeat Simple_repeat 1 45 0 24 103 0 0 chr21 4050389 4050476 -30857094 + AT_rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chr21 4050870 4050893 -30856677 + GC_rich Low_complexity Low_complexity 1 23 0 295 229 16 0 chr21 4051051 4051112 -30856458 + L2 LINE L2 3247 3308 -5 716 139 9 0 chr21 4051195 4051303 -30856267 + AluJb SINE Alu 1 109 -203 2326 88 0 10 chr21 4051304 4051611 -30855959 + AluSg SINE Alu 2 305 -5 435 295 70 62 chr21 4052619 4052860 -30854710 - MIR SINE MIR -19 243 1 27 49 0 0 chr21 4052912 4052953 -30854617 + AT_rich Low_complexity Low_complexity 1 41 0 1779 154 18 21 chr21 4052969 4053299 -30854271 - MER2 DNA MER2_type 0 344 16 360 64 0 0 chr21 4053709 4053756 -30853814 + (TG)n Simple_repeat Simple_repeat 2 48 0 1814 152 0 0 chr21 4053850 4054113 -30853457 - AluSx SINE Alu -20 292 30 40 49 0 0 chr21 4054341 4054402 -30853168 + AT_rich Low_complexity Low_complexity 1 61 0 21 36 0 0 chr21 4054577 4054605 -30852965 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 4055036 4055058 -30852512 + AT_rich Low_complexity Low_complexity 1 22 0 542 332 65 45 chr21 4055359 4055519 -30852051 - L1M4 LINE L1 -1050 5096 4941 945 172 8 107 chr21 4055519 4055781 -30851789 - MER46A DNA MER2_type 0 236 1 542 332 65 45 chr21 4055781 4056021 -30851549 - L1M4 LINE L1 -1205 4941 4688 233 344 70 0 chr21 4056291 4056419 -30851151 - L1M4 LINE L1 -1796 4350 4214 1505 208 19 17 chr21 4056419 4056876 -30850694 + LTR2B LTR ERV1 1 490 0 297 0 0 0 chr21 4058386 4058419 -30849151 + (T)n Simple_repeat Simple_repeat 1 33 0 879 255 42 49 chr21 4058718 4059149 -30848421 - L1ME2 LINE L1 -112 6052 5625 823 252 16 8 chr21 4059153 4059392 -30848178 - L1ME2 LINE L1 -579 5585 5348 455 298 13 0 chr21 4060455 4060606 -30846964 - MER52A LTR ERV1 0 1755 1603 555 258 77 50 chr21 4060990 4061211 -30846359 - MER52A LTR ERV1 -458 1297 1071 571 203 36 51 chr21 4061372 4061510 -30846060 - LTR28 LTR ERV1 -869 151 16 1548 148 51 4 chr21 4062063 4062319 -30845251 - AluSx SINE Alu -5 307 40 2093 125 3 0 chr21 4062329 4062632 -30844938 - AluSq SINE Alu -9 304 1 201 175 0 0 chr21 4062775 4062815 -30844755 + CT-rich Low_complexity Low_complexity 2 41 0 328 173 127 0 chr21 4062939 4063049 -30844521 - L1M LINE L1 -789 5391 5268 2455 80 3 3 chr21 4063207 4063520 -30844050 - AluSq SINE Alu 0 313 1 829 228 95 78 chr21 4063557 4064211 -30843359 - L1ME2 LINE L1 -1086 5060 4373 1624 109 0 13 chr21 4064211 4064440 -30843130 - AluSc SINE Alu -83 226 1 829 228 95 78 chr21 4064440 4064544 -30843026 - L1ME2 LINE L1 -1773 4373 4272 397 277 43 0 chr21 4064608 4064702 -30842868 - L1ME2 LINE L1 -2028 4118 4021 465 229 0 0 chr21 4064951 4065047 -30842523 - Tigger7 DNA MER2_type 0 2487 2392 350 81 65 0 chr21 4065144 4065206 -30842364 - Tigger7 DNA MER2_type -79 2408 2343 586 105 70 99 chr21 4065213 4065384 -30842186 - Tigger7 DNA MER2_type -78 2409 2244 910 203 124 33 chr21 4065381 4065622 -30841948 - Tigger7 DNA MER2_type -287 263 1 346 324 71 13 chr21 4065622 4065847 -30841723 - L1M4 LINE L1 -905 5241 5004 25 0 0 28 chr21 4066025 4066039 -30841531 + AT_rich Low_complexity Low_complexity 1 14 -21 1562 180 3 62 chr21 4066039 4066344 -30841226 - AluJo SINE Alu -25 287 1 25 0 0 28 chr21 4066344 4066365 -30841205 + AT_rich Low_complexity Low_complexity 14 35 0 22 0 0 0 chr21 4066757 4066779 -30840791 + AT_rich Low_complexity Low_complexity 1 22 0 752 208 105 82 chr21 4067627 4067921 -30839649 + MER21B LTR ERV1 1 301 -562 285 29 0 0 chr21 4067926 4067960 -30839610 + (TG)n Simple_repeat Simple_repeat 2 35 0 2047 137 6 25 chr21 4067960 4068274 -30839296 - AluSx SINE Alu -4 308 1 2310 68 0 39 chr21 4068355 4068662 -30838908 - AluY SINE Alu -16 295 1 2129 105 7 0 chr21 4069688 4069973 -30837597 - AluSq SINE Alu -22 291 5 2291 81 14 0 chr21 4069973 4070258 -30837312 - AluSg SINE Alu -21 289 1 376 192 81 7 chr21 4071469 4071616 -30835954 - LTR48 LTR ERV1 -22 738 450 304 216 59 10 chr21 4071653 4071755 -30835815 - LTR48 LTR ERV1 -302 485 379 480 255 7 21 chr21 4071797 4071942 -30835628 - LTR49 LTR ERV1 -452 143 1 320 288 50 12 chr21 4072074 4072154 -30835416 - L2 LINE L2 0 3272 3190 2655 189 80 34 chr21 4073434 4074169 -30833401 - LTR48 LTR ERV1 -24 742 1 197 312 0 0 chr21 4074393 4074441 -30833129 + L2 LINE L2 3242 3289 -24 507 299 19 19 chr21 4075803 4075957 -30831613 + MER5A DNA MER1_type 35 188 -1 367 77 19 0 chr21 4075980 4076028 -30831542 - THE1B LTR MaLR 0 364 316 2075 122 6 6 chr21 4076028 4076348 -30831222 + THE1B LTR MaLR 1 320 -44 2299 130 6 6 chr21 4076348 4076702 -30830868 - THE1B LTR MaLR 0 364 11 22 0 0 0 chr21 4076702 4076724 -30830846 + AT_rich Low_complexity Low_complexity 1 22 0 3050 117 61 23 chr21 4077034 4077562 -30830008 - MER4B LTR ERV1 0 610 63 274 217 58 0 chr21 4077794 4077863 -30829707 + MLT1L LTR MaLR 3 75 -540 1425 239 119 13 chr21 4078495 4079017 -30828553 - L1MC4 LINE L1 -136 7906 7330 4254 142 19 4 chr21 4079017 4079721 -30827849 + MER50 LTR ERV1 1 714 -20 475 203 98 0 chr21 4079722 4079845 -30827725 - L1MC4 LINE L1 -712 7330 7196 746 279 57 12 chr21 4081519 4081763 -30825807 - MIR SINE MIR 0 262 8 425 215 0 11 chr21 4082361 4082454 -30825116 + MIR SINE MIR 171 262 0 653 324 58 0 chr21 4082680 4082921 -30824649 + L2 LINE L2 2574 2828 -486 346 303 64 32 chr21 4083130 4083318 -30824252 - L1M4 LINE L1 -1543 4603 4410 23 54 0 0 chr21 4084688 4084725 -30822845 + AT_rich Low_complexity Low_complexity 1 37 0 220 350 45 38 chr21 4084886 4085043 -30822527 + L2 LINE L2 2813 2970 -343 257 211 56 14 chr21 4088477 4088548 -30819022 - MER3 DNA MER1_type -134 75 2 197 278 44 22 chr21 4089233 4089323 -30818247 - L2 LINE L2 -377 2936 2845 395 266 17 85 chr21 4091046 4091223 -30816347 - MER102b DNA MER1_type -23 318 154 4554 202 94 38 chr21 4091415 4092778 -30814792 - Charlie1a DNA MER1_type -15 1440 2 23 0 0 0 chr21 4093484 4093507 -30814063 + GC_rich Low_complexity Low_complexity 1 23 0 1106 177 29 19 chr21 4094387 4094596 -30812974 + AluJo SINE Alu 84 294 -18 926 251 23 0 chr21 4096084 4096303 -30811267 - MER58A DNA MER1_type 0 224 1 260 266 71 35 chr21 4096508 4096621 -30810949 - MIR SINE MIR -67 195 79 33 73 0 0 chr21 4097186 4097254 -30810316 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr21 4097490 4097522 -30810048 + AT_rich Low_complexity Low_complexity 1 32 0 320 226 132 9 chr21 4098435 4098541 -30809029 - HERVL68 LTR ERVL -1026 2011 1893 1546 278 42 7 chr21 4098712 4099161 -30808409 - HERVL68 LTR ERVL -1682 3848 3384 994 336 45 24 chr21 4099213 4099746 -30807824 + L1M2a LINE L1 4 547 -6621 3509 255 53 35 chr21 4100309 4101420 -30806150 + L1M2a LINE L1 1720 2809 -4358 2337 75 0 40 chr21 4101420 4101741 -30805829 + AluY SINE Alu 1 308 -3 3509 255 53 35 chr21 4101741 4102035 -30805535 + L1M2a LINE L1 2809 3096 -4071 2196 107 3 0 chr21 4102035 4102334 -30805236 + AluSp SINE Alu 1 300 -13 3509 255 53 35 chr21 4102334 4103091 -30804479 + L1M2a LINE L1 3096 3604 -3563 8951 196 43 4 chr21 4103104 4105218 -30802352 + L1M2a LINE L1 3651 5887 -1280 409 296 40 15 chr21 4105229 4105428 -30802142 + L1M4 LINE L1 4417 4620 -1526 257 350 60 0 chr21 4112503 4112620 -30794950 + L2 LINE L2 3190 3313 0 550 283 63 27 chr21 4114575 4114902 -30792668 + L1MEc LINE L1 878 1186 -5019 427 268 75 30 chr21 4114964 4115296 -30792274 + L1MEc LINE L1 1298 1644 -4752 263 307 149 29 chr21 4115411 4115487 -30792083 + L2 LINE L2 1732 1797 -1517 1409 176 54 45 chr21 4115487 4115822 -30791748 + MER44D DNA MER2_type 1 608 -1 263 307 149 29 chr21 4115822 4115986 -30791584 + L2 LINE L2 1797 2001 -1313 216 279 15 15 chr21 4116051 4116119 -30791451 + MER5B DNA MER1_type 111 178 0 355 118 0 0 chr21 4116347 4116398 -30791172 + L2 LINE L2 3263 3313 0 724 239 51 0 chr21 4118083 4118259 -30789311 + MIR SINE MIR 77 261 -1 27 49 0 0 chr21 4118268 4118309 -30789261 + AT_rich Low_complexity Low_complexity 1 41 0 1664 260 16 30 chr21 4120142 4120768 -30786802 + L1MEc LINE L1 2812 3428 -2787 1507 272 15 6 chr21 4120862 4121333 -30786237 + L1MEc LINE L1 3568 4042 -2173 204 130 74 19 chr21 4122113 4122167 -30785403 + (TTAAA)n Simple_repeat Simple_repeat 5 61 0 44 63 0 0 chr21 4122187 4122266 -30785304 + AT_rich Low_complexity Low_complexity 1 79 0 390 218 0 0 chr21 4122433 4122511 -30785059 + MIR SINE MIR 185 262 0 238 224 0 0 chr21 4124148 4124197 -30783373 + T-rich Low_complexity Low_complexity 1 49 0 1627 190 0 28 chr21 4124651 4124972 -30782598 - AluJo SINE Alu 0 312 1 1205 258 81 30 chr21 4125173 4125607 -30781963 - MLT1C LTR MaLR -5 462 7 243 0 0 0 chr21 4126291 4126318 -30781252 + (TG)n Simple_repeat Simple_repeat 2 28 0 264 215 152 13 chr21 4127087 4127166 -30780404 - MLT1J2 LTR MaLR -288 162 73 3858 141 26 5 chr21 4127235 4127879 -30779691 + L1MB2 LINE L1 5484 6141 -30 341 316 90 13 chr21 4128601 4128756 -30778814 - MIR SINE MIR -32 230 64 192 214 0 0 chr21 4129856 4129912 -30777658 + (TA)n Simple_repeat Simple_repeat 1 56 0 2413 60 0 10 chr21 4130111 4130411 -30777159 + AluY SINE Alu 1 297 -14 357 380 80 31 chr21 4131193 4131645 -30775925 + L2 LINE L2 1466 1939 -1375 1060 139 23 0 chr21 4131648 4131820 -30775750 + THE1A LTR MaLR 1 176 -179 489 123 12 0 chr21 4131815 4131896 -30775674 - THE1A LTR MaLR -120 235 154 1396 89 5 0 chr21 4131891 4132082 -30775488 + THE1A LTR MaLR 164 355 0 9989 103 11 4 chr21 4132082 4133460 -30774110 + THE1A-int LTR MaLR 1 1388 -192 1270 88 10 5 chr21 4133580 4133772 -30773798 + THE1A-int LTR MaLR 1388 1580 0 2413 116 3 3 chr21 4133772 4134127 -30773443 + THE1A LTR MaLR 1 355 0 2152 119 0 0 chr21 4134595 4134890 -30772680 + AluSx SINE Alu 2 296 -16 183 313 34 82 chr21 4134949 4135182 -30772388 + L2 LINE L2 2429 2650 -664 1915 148 10 62 chr21 4135251 4135635 -30771935 - THE1B LTR MaLR 0 364 1 478 284 59 34 chr21 4135736 4135940 -30771630 + L2 LINE L2 2851 3059 -213 25 75 0 0 chr21 4136006 4136059 -30771511 + AT_rich Low_complexity Low_complexity 1 53 0 297 330 0 41 chr21 4136092 4136189 -30771381 + L2 LINE L2 3153 3245 -27 293 238 152 57 chr21 4137280 4137385 -30770185 + L2 LINE L2 3199 3313 0 22 35 0 0 chr21 4138381 4138410 -30769160 + AT_rich Low_complexity Low_complexity 1 29 0 312 331 23 0 chr21 4138934 4139064 -30768506 - L1MC4a LINE L1 -1896 5912 5780 288 234 95 33 chr21 4139126 4139261 -30768309 - L1MC4a LINE L1 -481 5640 5545 380 176 0 9 chr21 4142241 4142349 -30765221 + CT-rich Low_complexity Low_complexity 4 110 0 1867 136 4 0 chr21 4142352 4142631 -30764939 - AluSx SINE Alu -3 309 30 21 0 0 0 chr21 4145031 4145052 -30762518 + AT_rich Low_complexity Low_complexity 1 21 0 438 94 0 0 chr21 4145486 4145550 -30762020 + (TG)n Simple_repeat Simple_repeat 2 65 0 221 308 75 75 chr21 4146137 4146390 -30761180 - L2 LINE L2 -730 2584 2332 2199 94 0 3 chr21 4146395 4146681 -30760889 - AluSc SINE Alu -24 285 1 1254 117 27 0 chr21 4146917 4147105 -30760465 - L1PA15 LINE L1 -21 6144 5952 321 304 72 8 chr21 4147107 4147232 -30760338 - L1MC/D LINE L1 -2181 5627 5495 233 211 48 72 chr21 4147315 4147481 -30760089 - L1 LINE L1 -770 5376 5215 2129 116 3 3 chr21 4150481 4150792 -30756778 + AluY SINE Alu 1 311 0 347 270 33 20 chr21 4151335 4151487 -30756083 - HAL1b LINE L1 -2 1346 1193 198 298 29 67 chr21 4155207 4155311 -30752259 + MER5B DNA MER1_type 61 160 -18 1599 165 41 10 chr21 4155683 4155974 -30751596 - AluSq SINE Alu -13 300 1 343 344 25 8 chr21 4157858 4157980 -30749590 + L2 LINE L2 2931 3054 -218 183 241 37 37 chr21 4159436 4159490 -30748080 + L2 LINE L2 3140 3193 -79 206 214 80 89 chr21 4159513 4159625 -30747945 - L2 LINE L2 -962 2352 2242 302 341 33 0 chr21 4159653 4159744 -30747826 - L2 LINE L2 -2127 1187 1094 240 336 16 0 chr21 4160345 4160467 -30747103 + MIR SINE MIR 16 139 -69 304 258 140 28 chr21 4162567 4162745 -30744825 - L1ME4a LINE L1 -213 5908 5711 238 164 0 98 chr21 4162759 4162820 -30744750 - L1ME4a LINE L1 -437 5684 5630 305 260 0 0 chr21 4162817 4162890 -30744680 - L1ME LINE L1 -437 5684 5612 345 140 0 0 chr21 4163846 4163903 -30743667 + (TA)n Simple_repeat Simple_repeat 1 57 0 2015 144 3 0 chr21 4163903 4164201 -30743369 - AluSx SINE Alu -8 304 6 23 0 0 0 chr21 4165840 4165863 -30741707 + AT_rich Low_complexity Low_complexity 1 23 0 256 328 35 58 chr21 4167061 4167235 -30740335 + MER91A DNA MER1_type 1 170 -26 275 211 18 0 chr21 4167298 4167355 -30740215 + MER91A DNA MER1_type 139 196 0 26 30 0 0 chr21 4168047 4168080 -30739490 + AT_rich Low_complexity Low_complexity 1 33 0 546 176 17 59 chr21 4168566 4168685 -30738885 + MER81 DNA DNA 1 114 0 222 37 0 0 chr21 4169245 4169272 -30738298 + (CA)n Simple_repeat Simple_repeat 1 27 0 346 303 72 5 chr21 4169283 4169491 -30738079 - HAL1 LINE L1 -332 2175 1954 815 277 66 5 chr21 4169498 4169711 -30737859 - HAL1 LINE L1 -577 1930 1705 542 270 158 5 chr21 4170085 4170281 -30737289 + MIR SINE MIR 37 262 0 249 305 0 0 chr21 4171017 4171122 -30736448 + (CA)n Simple_repeat Simple_repeat 2 106 0 21 0 0 0 chr21 4171366 4171387 -30736183 + AT_rich Low_complexity Low_complexity 1 21 0 392 366 69 16 chr21 4171400 4171717 -30735853 - L1 LINE L1 -2386 3760 3427 2113 104 0 0 chr21 4171881 4172188 -30735382 - AluSg SINE Alu 0 307 1 705 249 113 17 chr21 4173458 4173799 -30733771 - L1ME3A LINE L1 -60 6110 5745 2636 36 0 0 chr21 4174209 4174515 -30733055 - AluY SINE Alu -5 306 1 274 330 64 1 chr21 4174788 4174982 -30732588 + MIR SINE MIR 12 244 -18 633 309 105 38 chr21 4175979 4176525 -30731045 - L1M4 LINE L1 -1549 4597 4019 27 29 0 0 chr21 4176865 4176899 -30730671 + AT_rich Low_complexity Low_complexity 1 34 0 2376 65 0 10 chr21 4176932 4177239 -30730331 - AluY SINE Alu -7 304 1 252 59 0 0 chr21 4177703 4177737 -30729833 + (TA)n Simple_repeat Simple_repeat 2 35 0 1095 123 12 0 chr21 4177737 4177899 -30729671 - AluSg/x SINE Alu -15 295 132 2100 117 0 7 chr21 4177899 4178199 -30729371 - AluSx SINE Alu -14 298 1 370 296 49 14 chr21 4178270 4178412 -30729158 - L1M4 LINE L1 -3245 2901 2755 215 111 0 22 chr21 4178675 4178720 -30728850 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr21 4178720 4178740 -30728830 + (GA)n Simple_repeat Simple_repeat 2 21 0 1405 151 22 4 chr21 4179959 4180191 -30727379 + MER46A DNA MER2_type 1 236 0 22 35 0 0 chr21 4180734 4180763 -30726807 + AT_rich Low_complexity Low_complexity 1 29 0 2028 91 4 7 chr21 4181500 4181776 -30725794 + AluSg SINE Alu 1 275 -35 198 0 0 0 chr21 4181776 4181798 -30725772 + (T)n Simple_repeat Simple_repeat 1 22 0 914 209 47 19 chr21 4182463 4182674 -30724896 - MER20 DNA MER1_type -2 217 1 225 300 0 0 chr21 4183939 4183999 -30723571 + (TA)n Simple_repeat Simple_repeat 2 61 0 837 235 11 5 chr21 4184440 4184627 -30722943 - MIR SINE MIR -3 259 72 771 308 40 17 chr21 4185431 4185782 -30721788 + L1M4 LINE L1 4315 4673 -1473 919 215 105 0 chr21 4186352 4186552 -30721018 + MER58A DNA MER1_type 1 221 -3 1529 197 7 17 chr21 4186709 4187009 -30720561 + AluJo SINE Alu 3 299 -13 354 212 0 0 chr21 4187995 4188075 -30719495 - L1MC2 LINE L1 -11 6333 6254 21 57 0 0 chr21 4188328 4188363 -30719207 + AT_rich Low_complexity Low_complexity 1 35 0 605 205 70 19 chr21 4188675 4188831 -30718739 - MER3 DNA MER1_type -44 165 2 282 301 43 11 chr21 4189179 4189272 -30718298 - MIR SINE MIR -69 139 44 1179 82 0 6 chr21 4189596 4189754 -30717816 + AluSg/x SINE Alu 143 299 -11 234 0 0 0 chr21 4189759 4189785 -30717785 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr21 4190510 4190531 -30717039 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 4190644 4190672 -30716898 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr21 4190720 4190748 -30716822 + AT_rich Low_complexity Low_complexity 1 28 0 1444 196 0 35 chr21 4190849 4191165 -30716405 - AluJb SINE Alu -7 305 1 2024 98 31 0 chr21 4191250 4191537 -30716033 - AluSp SINE Alu -17 296 1 1870 129 0 50 chr21 4192634 4192936 -30714634 + AluSc SINE Alu 6 292 -17 217 333 77 13 chr21 4193202 4193280 -30714290 - L2 LINE L2 -51 3221 3139 1998 124 49 35 chr21 4194124 4194494 -30713076 - THE1C LTR MaLR 0 375 1 992 245 37 0 chr21 4194747 4194963 -30712607 + MER58A DNA MER1_type 1 224 0 203 309 111 0 chr21 4194964 4195045 -30712525 + L2 LINE L2 3190 3279 -34 25 51 0 0 chr21 4195815 4195854 -30711716 + AT_rich Low_complexity Low_complexity 1 39 0 231 188 0 0 chr21 4197056 4197104 -30710466 + (TA)n Simple_repeat Simple_repeat 2 49 0 11812 167 31 16 chr21 4198106 4199611 -30707959 - L1PA11 LINE L1 0 6174 4693 189 74 0 0 chr21 4199611 4199638 -30707932 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 11812 167 31 16 chr21 4199638 4201052 -30706518 - L1PA11 LINE L1 -1481 4693 3209 2232 74 0 44 chr21 4201052 4201350 -30706220 + AluY SINE Alu 12 296 -15 11812 167 31 16 chr21 4201350 4201615 -30705955 - L1PA11 LINE L1 -2965 3209 2949 640 230 84 28 chr21 4201911 4202089 -30705481 + MER5A DNA MER1_type 2 189 0 22 0 0 0 chr21 4202211 4202233 -30705337 + AT_rich Low_complexity Low_complexity 1 22 0 1651 171 41 69 chr21 4202487 4202879 -30704691 - MLT1B LTR MaLR 0 390 10 1578 210 0 0 chr21 4204065 4204360 -30703210 - AluJb SINE Alu -17 295 1 1048 259 13 13 chr21 4204715 4204954 -30702616 + MIR SINE MIR 13 251 -11 266 268 116 36 chr21 4205554 4205666 -30701904 + L2 LINE L2 3124 3244 -28 691 216 27 0 chr21 4205732 4205880 -30701690 - MER3 DNA MER1_type -57 152 1 686 248 91 5 chr21 4206364 4206574 -30700996 - LTR50 LTR ERVL -567 228 1 219 272 148 25 chr21 4206799 4206880 -30700690 - L2 LINE L2 -1 3312 3222 429 20 0 0 chr21 4209105 4209155 -30698415 + (CA)n Simple_repeat Simple_repeat 1 50 0 297 0 0 0 chr21 4209644 4209677 -30697893 + (A)n Simple_repeat Simple_repeat 1 33 0 888 262 134 30 chr21 4209677 4210169 -30697401 + L1ME3 LINE L1 5352 5894 -268 300 310 92 63 chr21 4210387 4210626 -30696944 - L2 LINE L2 -1020 2294 2049 221 277 62 0 chr21 4210715 4210780 -30696790 - L2 LINE L2 -1416 1898 1830 379 361 39 0 chr21 4211397 4211527 -30696043 + L1MEd LINE L1 577 711 -5494 23 33 0 0 chr21 4211559 4211589 -30695981 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr21 4211632 4211653 -30695917 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 4212514 4212538 -30695032 + AT_rich Low_complexity Low_complexity 1 24 0 281 190 0 35 chr21 4213079 4213137 -30694433 + U6 snRNA snRNA 52 107 0 13594 150 39 26 chr21 4213450 4216902 -30690668 + L1MA2 LINE L1 342 3747 -3976 1407 121 19 0 chr21 4216902 4217117 -30690453 - L1PA14 LINE L1 -9 6152 5934 13594 150 39 26 chr21 4217117 4220535 -30687035 + L1MA2 LINE L1 3747 7723 0 690 309 88 67 chr21 4220733 4221110 -30686460 + L1MEd LINE L1 940 1199 -5018 2589 42 0 3 chr21 4221110 4221416 -30686154 + AluY SINE Alu 7 311 0 690 309 88 67 chr21 4221416 4221883 -30685687 + L1MEd LINE L1 1199 1655 -4562 1540 267 39 15 chr21 4221900 4222312 -30685258 + L1M4 LINE L1 16 437 -6105 1943 173 18 23 chr21 4222320 4222708 -30684862 + MER50 LTR ERV1 349 734 0 355 272 32 16 chr21 4222985 4223110 -30684460 + L1M4 LINE L1 562 688 -5854 625 330 95 46 chr21 4223234 4223625 -30683945 - L1ME LINE L1 -5651 419 10 697 222 0 0 chr21 4223791 4223926 -30683644 + FLAM_C SINE Alu 3 137 -6 1609 153 0 58 chr21 4224520 4224833 -30682737 - AluJb SINE Alu -17 295 1 308 280 45 8 chr21 4224956 4225088 -30682482 - HAL1 LINE L1 -863 1644 1508 691 182 0 8 chr21 4225124 4225245 -30682325 - AluSc SINE Alu -65 244 125 2927 213 46 26 chr21 4225332 4225716 -30681854 - MER44D DNA MER2_type -1882 605 327 2234 53 40 30 chr21 4225716 4226016 -30681554 - AluY SINE Alu -8 303 1 2927 213 46 26 chr21 4226016 4226349 -30681221 - MER44D DNA MER2_type -2160 327 2 717 144 25 0 chr21 4226474 4226592 -30680978 + MER65B LTR ERV1 7 127 -404 3960 187 84 32 chr21 4226656 4227726 -30679844 + MER4-int LTR ERV1 1369 2494 -2377 1109 206 62 87 chr21 4227802 4228574 -30678996 + MER4-int LTR ERV1 1516 2435 -4323 2173 121 13 0 chr21 4228577 4228883 -30678687 - AluSq SINE Alu -3 310 1 17894 76 8 3 chr21 4229013 4232263 -30675307 - L1PA6 LINE L1 -1 6153 2896 207 0 0 0 chr21 4232327 4232350 -30675220 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 31966 36 1 1 chr21 4232352 4238506 -30669064 - L1PA3 LINE L1 -3 6152 1 7814 81 0 2 chr21 4238509 4239580 -30667990 - L1PA6 LINE L1 -3219 2927 1859 774 203 54 93 chr21 4239715 4240436 -30667134 + MER4-int LTR ERV1 3767 4481 -1850 530 157 43 71 chr21 4240436 4240576 -30666994 + MER65A LTR ERV1 310 445 0 396 247 19 78 chr21 4240636 4240790 -30666780 - MLT1I LTR MaLR -200 209 65 1377 248 70 13 chr21 4240931 4241406 -30666164 + MLT1D LTR MaLR 1 502 -3 24 77 0 0 chr21 4242175 4242227 -30665343 + AT_rich Low_complexity Low_complexity 1 52 0 2067 110 138 46 chr21 4242285 4242313 -30665257 + MSTA LTR MaLR 1 25 -403 2165 114 47 42 chr21 4242313 4242674 -30664896 - THE1B LTR MaLR 0 364 2 11400 109 4 0 chr21 4242675 4244249 -30663321 - THE1B-int LTR MaLR 0 1580 1 2118 130 54 23 chr21 4244249 4244602 -30662968 - THE1B LTR MaLR 0 364 1 2067 110 138 46 chr21 4244602 4244962 -30662608 + MSTA LTR MaLR 24 428 0 601 282 32 62 chr21 4245611 4245951 -30661619 - LTR41 LTR ERVL -7 766 437 616 228 28 17 chr21 4246114 4246294 -30661276 - LTR41 LTR ERVL -586 187 6 21 0 0 0 chr21 4247936 4247957 -30659613 + AT_rich Low_complexity Low_complexity 1 21 0 1923 159 3 3 chr21 4248828 4249124 -30658446 - AluSx SINE Alu -16 296 1 3566 237 70 35 chr21 4249256 4250379 -30657191 - L1MDa LINE L1 -5347 1193 32 3079 71 10 2 chr21 4250644 4251254 -30656316 + PABL_A LTR ERV1 1 660 0 2328 78 0 26 chr21 4251561 4251870 -30655700 - AluSc SINE Alu -8 301 1 2244 122 0 0 chr21 4251923 4252227 -30655343 + AluSx SINE Alu 1 304 -8 195 323 16 0 chr21 4252991 4253053 -30654517 + L2 LINE L2 3251 3313 0 664 282 133 25 chr21 4253695 4254056 -30653514 - MLT1J2 LTR MaLR -34 416 17 438 294 8 0 chr21 4254836 4254962 -30652608 + MIR SINE MIR 75 201 -61 21 0 0 0 chr21 4255030 4255051 -30652519 + AT_rich Low_complexity Low_complexity 1 21 0 753 240 35 30 chr21 4255107 4255307 -30652263 - L1ME1 LINE L1 -63 6172 5972 724 234 51 6 chr21 4255350 4255664 -30651906 - L1ME1 LINE L1 -697 5534 5212 502 292 7 0 chr21 4255665 4255809 -30651761 - L1ME1 LINE L1 -1127 5088 4944 2035 154 46 31 chr21 4255812 4256357 -30651213 - MLT2A2 LTR ERVL 0 554 1 725 264 58 29 chr21 4256417 4256799 -30650771 - L1ME1 LINE L1 -1347 4868 4476 950 237 30 39 chr21 4256799 4256866 -30650704 - L1ME1 LINE L1 -4488 1908 1842 2901 176 21 5 chr21 4256866 4257239 -30650331 - L1MB2 LINE L1 -3 6168 5778 1056 137 0 0 chr21 4257239 4257468 -30650102 + (TA)n Simple_repeat Simple_repeat 1 229 0 2901 176 21 5 chr21 4257468 4257648 -30649922 - L1MB2 LINE L1 -393 5778 5602 950 237 30 39 chr21 4257648 4257917 -30649653 - L1ME1 LINE L1 -4554 1842 1575 468 288 61 82 chr21 4258055 4258447 -30649123 - MLT1J2-int LTR MaLR -6 1365 982 327 287 88 7 chr21 4258921 4259057 -30648513 - MLT1J2-int LTR MaLR -760 611 465 6539 211 49 8 chr21 4259864 4261381 -30646189 - Cheshire DNA MER1_type 0 2420 841 279 170 57 0 chr21 4261386 4261439 -30646131 - Cheshire DNA MER1_type -2321 99 44 5236 124 30 6 chr21 4262333 4263266 -30644304 - L1PB1 LINE L1 -3 6148 5232 34 24 0 0 chr21 4263340 4263381 -30644189 + AT_rich Low_complexity Low_complexity 1 41 0 286 241 142 50 chr21 4263439 4263580 -30643990 + MIR SINE MIR 78 231 -31 267 209 15 0 chr21 4265140 4265207 -30642363 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 1484 213 47 14 chr21 4266955 4267393 -30640177 - L1MC/D LINE L1 -718 5641 5191 2707 107 0 3 chr21 4267442 4267833 -30639737 - L1PA13 LINE L1 -1 6162 5773 18856 91 8 14 chr21 4267838 4270609 -30636961 - L1PA13 LINE L1 -914 5232 2479 2211 146 4 16 chr21 4270597 4271151 -30636419 - L1P4 LINE L1 -678 6923 6373 4443 181 11 10 chr21 4271149 4272031 -30635539 - L1P4 LINE L1 -3595 3989 3107 3472 173 16 9 chr21 4272039 4272618 -30634952 - L1P4 LINE L1 -6986 595 13 1412 218 54 40 chr21 4272701 4273086 -30634484 - L1MC/D LINE L1 -1098 5048 4653 1874 170 10 0 chr21 4273086 4273380 -30634190 - AluSx SINE Alu -15 297 1 1412 218 54 40 chr21 4273380 4273472 -30634098 - L1MC/D LINE L1 -1493 4653 4564 3908 208 38 14 chr21 4273493 4273878 -30633692 - L1MB7 LINE L1 0 6184 5810 3011 88 44 14 chr21 4273878 4274266 -30633304 + MLT2A1 LTR ERVL 1 405 -39 180 0 0 0 chr21 4274266 4274286 -30633284 + (TA)n Simple_repeat Simple_repeat 2 21 0 3011 88 44 14 chr21 4274286 4274328 -30633242 + MLT2A1 LTR ERVL 405 444 0 3908 208 38 14 chr21 4274328 4275561 -30632009 - L1MB7 LINE L1 -374 5810 4528 742 238 9 15 chr21 4275548 4275974 -30631596 + L1ME1 LINE L1 4841 5390 -788 568 226 99 63 chr21 4276035 4276256 -30631314 - MER34B LTR ERV1 -312 253 25 1264 234 75 18 chr21 4276264 4276653 -30630917 + L1ME1 LINE L1 5691 6101 -65 285 51 0 0 chr21 4276768 4276807 -30630763 + (TC)n Simple_repeat Simple_repeat 2 40 0 321 26 0 0 chr21 4277125 4277163 -30630407 + (CA)n Simple_repeat Simple_repeat 2 39 0 378 0 0 0 chr21 4277165 4277207 -30630363 + (TA)n Simple_repeat Simple_repeat 2 43 0 261 238 0 0 chr21 4277976 4278039 -30629531 + (ATG)n Simple_repeat Simple_repeat 2 64 0 23 0 0 0 chr21 4278362 4278385 -30629185 + AT_rich Low_complexity Low_complexity 1 23 0 2601 39 0 3 chr21 4278621 4278931 -30628639 - AluY SINE Alu -2 309 1 366 173 82 36 chr21 4279662 4279772 -30627798 - L1ME4a LINE L1 -11 6110 5996 2477 76 0 3 chr21 4280625 4280928 -30626642 + AluSq SINE Alu 1 302 -11 1148 102 28 0 chr21 4281211 4281387 -30626183 - L1MA3 LINE L1 0 6305 6125 268 261 239 0 chr21 4281577 4281669 -30625901 - MER5B DNA MER1_type -63 115 2 297 285 98 0 chr21 4283328 4283451 -30624119 - L2 LINE L2 -33 3280 3146 280 358 14 39 chr21 4283507 4283714 -30623856 - L2 LINE L2 -167 3146 2945 1667 225 59 53 chr21 4284100 4284612 -30622958 - MLT1E2 LTR MaLR 0 626 112 2410 206 13 11 chr21 4284622 4285092 -30622478 + MER21B LTR ERV1 1 471 -392 24 32 0 0 chr21 4285097 4285128 -30622442 + AT_rich Low_complexity Low_complexity 1 31 0 1342 194 96 50 chr21 4285153 4285530 -30622040 + MER21B LTR ERV1 454 847 -16 254 132 0 75 chr21 4285597 4285650 -30621920 - MLT1E2 LTR MaLR -605 49 1 270 0 0 0 chr21 4285686 4285716 -30621854 + (T)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr21 4286430 4286452 -30621118 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 4287688 4287709 -30619861 + (CAT)n Simple_repeat Simple_repeat 2 22 0 204 308 77 48 chr21 4287877 4287981 -30619589 - L2 LINE L2 -2919 395 289 2799 81 74 12 chr21 4288564 4288939 -30618631 + MLT2A1 LTR ERVL 1 406 -38 520 26 0 26 chr21 4288939 4289015 -30618555 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2799 81 74 12 chr21 4289015 4289057 -30618513 + MLT2A1 LTR ERVL 406 444 0 21 36 0 0 chr21 4289912 4289940 -30617630 + AT_rich Low_complexity Low_complexity 1 28 0 1971 76 0 0 chr21 4290675 4290926 -30616644 - AluY SINE Alu -11 300 50 27 29 0 0 chr21 4291176 4291210 -30616360 + AT_rich Low_complexity Low_complexity 1 34 0 2104 97 10 30 chr21 4292320 4292662 -30614908 + AluSg SINE Alu 1 336 0 566 253 18 62 chr21 4294501 4294726 -30612844 - MER58C DNA MER1_type 0 215 1 3021 99 2 20 chr21 4297389 4297845 -30609725 - LTR7 LTR ERV1 -2 448 1 2275 113 51 3 chr21 4297845 4298217 -30609353 - HERVH LTR ERV1 0 7713 7324 1492 111 0 22 chr21 4298217 4298442 -30609128 - HERVH LTR ERV1 -1894 5819 5600 3090 131 2 2 chr21 4298443 4299057 -30608513 - HERVH LTR ERV1 -2564 5149 4488 5715 105 9 3 chr21 4299059 4299908 -30607662 - HERVH LTR ERV1 -3720 3993 3140 15303 96 9 24 chr21 4299894 4302681 -30604889 - HERVH LTR ERV1 -4721 2992 1 2998 101 2 22 chr21 4302683 4303140 -30604430 - LTR7 LTR ERV1 -2 448 1 197 389 19 9 chr21 4303418 4303526 -30604044 + MIR3 SINE MIR 13 121 -87 783 207 50 6 chr21 4304747 4304926 -30602644 - L1MB5 LINE L1 -8 6166 5980 21 0 0 0 chr21 4305315 4305336 -30602234 + AT_rich Low_complexity Low_complexity 1 21 0 245 106 0 21 chr21 4305523 4305570 -30602000 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 192 319 21 64 chr21 4305738 4305832 -30601738 - MIR SINE MIR -153 109 20 326 295 74 8 chr21 4305840 4305962 -30601608 + MIR3 SINE MIR 66 195 -13 22 35 0 0 chr21 4308268 4308297 -30599273 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 4308503 4308529 -30599041 + AT_rich Low_complexity Low_complexity 1 26 0 280 274 54 2 chr21 4309161 4309270 -30598300 + MIR SINE MIR 33 146 -62 284 92 0 0 chr21 4309442 4309484 -30598086 - MLT2C2 LTR ERVL 0 464 373 313 250 23 8 chr21 4309510 4309642 -30597928 + (TATAA)n Simple_repeat Simple_repeat 5 138 0 272 123 39 50 chr21 4309642 4309821 -30597749 + (TA)n Simple_repeat Simple_repeat 1 177 0 1465 247 52 46 chr21 4309881 4310362 -30597208 - MLT2B1 LTR ERVL -35 485 2 2350 93 0 10 chr21 4311035 4311347 -30596223 - AluSp SINE Alu -4 309 1 1414 201 105 85 chr21 4311619 4312326 -30595244 + MER69 DNA AcHobo 1466 2186 -340 390 195 42 100 chr21 4312320 4312447 -30595123 + MER69 DNA AcHobo 2337 2451 -75 2636 48 0 3 chr21 4312447 4312759 -30594811 - AluY SINE Alu 0 311 1 390 195 42 100 chr21 4312759 4312821 -30594749 + MER69 DNA AcHobo 2451 2515 -11 194 318 0 68 chr21 4312912 4313000 -30594570 + L2 LINE L2 3191 3272 0 181 222 0 93 chr21 4314276 4314330 -30593240 - L2 LINE L2 0 3313 3265 266 196 20 0 chr21 4314487 4314538 -30593032 - MIR3 SINE MIR -6 202 151 444 204 29 109 chr21 4314601 4314690 -30592880 - L2 LINE L2 0 3313 3237 2549 53 0 0 chr21 4314690 4314993 -30592577 + AluY SINE Alu 1 303 -8 444 204 29 109 chr21 4314993 4315040 -30592530 - L2 LINE L2 -76 3237 3188 23 0 0 0 chr21 4316785 4316808 -30590762 + AT_rich Low_complexity Low_complexity 1 23 0 2279 115 11 11 chr21 4319110 4319467 -30588103 + L1PA10 LINE L1 5812 6168 0 437 312 49 39 chr21 4319994 4320199 -30587371 + L1MEc LINE L1 1531 1737 -4659 2095 110 3 3 chr21 4320405 4320696 -30586874 + AluSq SINE Alu 1 291 -22 707 310 66 17 chr21 4321665 4321952 -30585618 - MLT1I LTR MaLR -49 360 60 3094 156 66 9 chr21 4322147 4322522 -30585048 - MER6A DNA MER2_type -260 605 184 204 40 0 0 chr21 4322522 4322547 -30585023 + (CA)n Simple_repeat Simple_repeat 2 26 0 3094 156 66 9 chr21 4322547 4322743 -30584827 - MER6A DNA MER2_type -681 184 1 2609 43 0 0 chr21 4322789 4323093 -30584477 - AluY SINE Alu -7 304 1 26 74 0 0 chr21 4324316 4324370 -30583200 + AT_rich Low_complexity Low_complexity 1 54 0 651 228 20 13 chr21 4324413 4324562 -30583008 + MER58B DNA MER1_type 191 340 -1 420 318 40 0 chr21 4324565 4324741 -30582829 + MIR SINE MIR 77 259 -3 237 33 0 0 chr21 4325508 4325538 -30582032 + (CA)n Simple_repeat Simple_repeat 1 30 0 359 277 77 51 chr21 4325716 4325990 -30581580 + L1ME LINE L1 5542 5822 -299 261 0 0 0 chr21 4326094 4326123 -30581447 + (CA)n Simple_repeat Simple_repeat 2 30 0 481 168 38 0 chr21 4326903 4327121 -30580449 + (TA)n Simple_repeat Simple_repeat 1 226 0 300 256 48 40 chr21 4327248 4327373 -30580197 - L1ME LINE L1 -685 5436 5311 789 274 14 46 chr21 4327377 4327596 -30579974 + MER58A DNA MER1_type 2 213 -11 417 291 60 20 chr21 4328443 4328594 -30578976 + MLT1I LTR MaLR 253 409 0 432 0 0 0 chr21 4329604 4329652 -30577918 + (TG)n Simple_repeat Simple_repeat 2 49 0 2217 120 0 0 chr21 4330464 4330764 -30576806 - AluSq SINE Alu -13 300 1 1575 172 11 11 chr21 4332153 4332420 -30575150 + Tigger7 DNA MER2_type 1 267 -2220 528 216 0 0 chr21 4332419 4332516 -30575054 + Tigger7 DNA MER2_type 2391 2487 0 9238 35 3 0 chr21 4332561 4334453 -30573117 - L1PA4 LINE L1 0 6155 4259 21 57 0 0 chr21 4335089 4335124 -30572446 + AT_rich Low_complexity Low_complexity 1 35 0 525 268 68 54 chr21 4335656 4335861 -30571709 - MIR SINE MIR -9 253 46 196 275 55 55 chr21 4335869 4335978 -30571592 + MIR SINE MIR 99 207 -55 275 276 40 0 chr21 4336260 4336336 -30571234 + L1ME LINE L1 5566 5644 -477 794 150 52 40 chr21 4336508 4336681 -30570889 + L1PA14 LINE L1 5985 6159 -2 1771 191 8 40 chr21 4337216 4337435 -30570135 - MLT1A1 LTR MaLR 0 365 161 1962 123 0 0 chr21 4337435 4337704 -30569866 - AluSc SINE Alu -1 308 40 1771 191 8 40 chr21 4337704 4337861 -30569709 - MLT1A1 LTR MaLR -204 161 1 334 298 56 45 chr21 4340524 4340722 -30566848 + L2 LINE L2 1917 2116 -1198 2362 102 0 0 chr21 4341847 4342150 -30565420 + AluSx SINE Alu 1 303 -9 266 143 0 0 chr21 4343277 4343319 -30564251 - MLT1D LTR MaLR 0 505 464 2445 62 0 3 chr21 4344109 4344413 -30563157 - AluY SINE Alu -8 303 1 2462 57 0 0 chr21 4344880 4345179 -30562391 + AluY SINE Alu 1 299 -12 608 238 69 6 chr21 4345600 4345760 -30561810 + MLT1H LTR MaLR 1 170 -379 1776 166 0 11 chr21 4345767 4346050 -30561520 + AluJo SINE Alu 10 289 -23 252 292 14 14 chr21 4346068 4346140 -30561430 + MLT1H LTR MaLR 121 192 -363 252 175 127 0 chr21 4346295 4346358 -30561212 + MLT1H LTR MaLR 479 549 0 291 273 93 90 chr21 4347338 4347616 -30559954 - MLT1H LTR MaLR -33 516 238 755 184 114 13 chr21 4348465 4348623 -30558947 + FAM SINE Alu 1 174 -1 1558 194 32 0 chr21 4350357 4350640 -30556930 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr21 4352653 4352674 -30554896 + AT_rich Low_complexity Low_complexity 1 21 0 180 360 81 9 chr21 4352989 4353100 -30554470 + L2 LINE L2 3146 3264 -8 428 242 10 0 chr21 4353246 4353345 -30554225 - U6 snRNA snRNA -6 101 2 28 29 0 0 chr21 4353510 4353545 -30554025 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr21 4354052 4354076 -30553494 + AT_rich Low_complexity Low_complexity 1 24 0 1600 153 56 17 chr21 4354353 4354521 -30553049 - AluSx SINE Alu -13 299 114 198 0 0 0 chr21 4354521 4354543 -30553027 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1600 153 56 17 chr21 4354543 4354662 -30552908 - AluSx SINE Alu -198 114 1 1757 175 17 0 chr21 4354665 4354957 -30552613 - AluJb SINE Alu -15 297 1 492 258 88 81 chr21 4355637 4356021 -30551549 - HAL1 LINE L1 -2120 387 1 2454 117 11 16 chr21 4357022 4357399 -30550171 - THE1C LTR MaLR 0 375 1 498 239 23 68 chr21 4358659 4358835 -30548735 + MER21B LTR ERV1 141 308 -555 507 210 52 127 chr21 4358959 4359250 -30548320 + MER21A LTR ERV1 500 768 -163 350 303 42 21 chr21 4360222 4360364 -30547206 + LTR16B LTR ERVL 107 251 -213 25 65 0 0 chr21 4361186 4361232 -30546338 + AT_rich Low_complexity Low_complexity 1 46 0 1460 218 20 83 chr21 4361386 4361933 -30545637 - MLT2B2 LTR ERVL -8 546 29 186 118 0 0 chr21 4363077 4363111 -30544459 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 189 370 10 10 chr21 4363868 4363968 -30543602 + L2 LINE L2 3204 3303 -10 208 308 202 10 chr21 4363980 4364084 -30543486 + MIR3 SINE MIR 71 194 -14 2538 40 0 3 chr21 4364086 4364382 -30543188 + AluY SINE Alu 1 295 -16 1018 192 92 19 chr21 4364967 4365208 -30542362 - MLT1A1 LTR MaLR -104 261 1 353 223 132 18 chr21 4367208 4367374 -30540196 + L1ME LINE L1 5574 5758 -363 1996 138 10 0 chr21 4367568 4368063 -30539507 + L1MA1 LINE L1 5001 5500 -743 5351 87 29 33 chr21 4368870 4369710 -30537860 + L1MA1 LINE L1 5467 6302 0 1040 17 0 0 chr21 4370601 4370720 -30536850 - L1PA3 LINE L1 0 6155 6037 1377 266 59 46 chr21 4371576 4372019 -30535551 - MLT1J LTR MaLR -4 507 56 1697 243 108 0 chr21 4372019 4372475 -30535095 + MLT1D LTR MaLR 1 505 0 1377 266 59 46 chr21 4372475 4372508 -30535062 - MLT1J LTR MaLR -455 56 25 2447 90 0 0 chr21 4372530 4372860 -30534710 - AluSg SINE Alu 0 330 1 2174 193 21 45 chr21 4373471 4373985 -30533585 + MLT1D LTR MaLR 1 502 -3 1101 74 0 0 chr21 4375305 4375440 -30532130 - AluSg/x SINE Alu -19 291 157 991 239 23 42 chr21 4377093 4377473 -30530097 - L1ME3 LINE L1 0 6170 5806 508 313 55 5 chr21 4377492 4377693 -30529877 - L1ME3 LINE L1 -471 5699 5489 7237 179 67 67 chr21 4377693 4379375 -30528195 - MER52A LTR ERV1 0 1755 1 2345 89 0 3 chr21 4379527 4379831 -30527739 - AluY SINE Alu -6 305 3 642 270 83 106 chr21 4380002 4380435 -30527135 - MLT1H LTR MaLR -120 429 7 23 54 0 0 chr21 4380490 4380527 -30527043 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr21 4380741 4380776 -30526794 + AT_rich Low_complexity Low_complexity 1 35 0 617 284 35 0 chr21 4380913 4381145 -30526425 - L1ME3 LINE L1 -1451 4695 4456 434 204 127 23 chr21 4381156 4381376 -30526194 - L1ME3 LINE L1 -1712 4434 4192 398 53 18 0 chr21 4381522 4381579 -30525991 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2026 278 58 25 chr21 4381586 4382855 -30524715 - L1ME3 LINE L1 -2155 3991 2728 440 304 70 9 chr21 4383011 4383353 -30524217 - L1ME3 LINE L1 -3650 2496 2134 512 226 19 82 chr21 4383608 4383767 -30523803 - MLT1E2 LTR MaLR -476 150 2 2148 125 6 3 chr21 4384108 4384419 -30523151 - AluSx SINE Alu 0 312 1 22 0 0 0 chr21 4384449 4384471 -30523099 + AT_rich Low_complexity Low_complexity 1 22 0 281 182 0 15 chr21 4386328 4386394 -30521176 + (TA)n Simple_repeat Simple_repeat 1 65 0 32 0 0 0 chr21 4386896 4386928 -30520642 + AT_rich Low_complexity Low_complexity 1 32 0 229 192 39 0 chr21 4387902 4387954 -30519616 + (TA)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr21 4392799 4392842 -30514728 + AT_rich Low_complexity Low_complexity 1 43 0 561 255 115 13 chr21 4395475 4395632 -30511938 + MIR SINE MIR 13 185 -77 23 0 0 0 chr21 4395724 4395747 -30511823 + AT_rich Low_complexity Low_complexity 1 23 0 269 305 63 0 chr21 4396327 4396422 -30511148 + MIR SINE MIR 111 211 -51 564 200 35 17 chr21 4397897 4398012 -30509558 - L2 LINE L2 -4 3309 3193 28 71 0 0 chr21 4398790 4398846 -30508724 + AT_rich Low_complexity Low_complexity 1 56 0 240 333 0 0 chr21 4400018 4400087 -30507483 + MIR SINE MIR 31 99 -109 2572 108 6 0 chr21 4401305 4401667 -30505903 - THE1B LTR MaLR 0 364 1 388 287 18 30 chr21 4402842 4403006 -30504564 + MLT1J2 LTR MaLR 7 168 -282 22 0 0 0 chr21 4403229 4403251 -30504319 + AT_rich Low_complexity Low_complexity 1 22 0 390 309 0 8 chr21 4403465 4403591 -30503979 - MLT1I LTR MaLR -277 132 8 489 288 27 14 chr21 4404416 4404635 -30502935 - L1MC5 LINE L1 -32 7929 7708 2348 248 58 20 chr21 4405818 4406524 -30501046 - L1ME1 LINE L1 -20 6215 5483 405 256 45 0 chr21 4406521 4406654 -30500916 - L1ME1 LINE L1 -2471 3744 3606 4783 270 58 41 chr21 4406736 4407202 -30500368 - L1M4 LINE L1 -818 5328 4872 1739 131 0 15 chr21 4407202 4407462 -30500108 + AluSx SINE Alu 40 295 -17 4783 270 58 41 chr21 4407462 4409403 -30498167 - L1M4 LINE L1 -1274 4872 2879 2220 55 0 0 chr21 4409455 4409751 -30497819 - AluY SINE Alu 0 305 10 290 135 77 0 chr21 4409766 4409818 -30497752 - L1M4 LINE L1 -3347 2799 2744 350 218 99 0 chr21 4410048 4410149 -30497421 - L1MA9 LINE L1 -22 6290 6180 589 258 46 0 chr21 4410199 4410416 -30497154 - L1M4 LINE L1 -3760 2386 2160 30 45 0 0 chr21 4410537 4410581 -30496989 + AT_rich Low_complexity Low_complexity 1 44 0 1376 285 62 30 chr21 4410834 4411556 -30496014 - L1ME1 LINE L1 -4579 1817 1073 1128 181 28 14 chr21 4411559 4411775 -30495795 - AluSx SINE Alu -76 236 18 1920 138 0 3 chr21 4411807 4412113 -30495457 - AluSx SINE Alu 0 305 1 2357 167 26 72 chr21 4413425 4413463 -30494107 - MLT2B2 LTR ERVL 0 515 477 497 68 14 0 chr21 4413463 4413537 -30494033 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 2263 99 0 0 chr21 4413547 4413841 -30493729 + AluSg SINE Alu 1 294 -16 2357 167 26 72 chr21 4413841 4414330 -30493240 - MLT2B2 LTR ERVL -47 468 2 370 239 45 97 chr21 4414523 4414657 -30492913 - MIR3 SINE MIR -74 134 8 318 26 0 0 chr21 4415430 4415469 -30492101 + (TG)n Simple_repeat Simple_repeat 2 40 0 317 382 88 8 chr21 4415482 4415720 -30491850 + L2 LINE L2 2499 2755 -559 260 169 34 0 chr21 4415858 4415917 -30491653 + MER112 DNA MER1_type 67 127 -133 1096 136 124 33 chr21 4417584 4417891 -30489679 - L1M2 LINE L1 -748 5398 5202 9173 192 21 10 chr21 4417883 4419880 -30487690 - L1M2 LINE L1 -1417 4729 2710 310 234 199 55 chr21 4420509 4420710 -30486860 - L2 LINE L2 -82 3231 3002 3434 163 77 58 chr21 4421987 4422207 -30485363 - L1M LINE L1 -783 5363 5149 2443 28 0 7 chr21 4422207 4422522 -30485048 - AluY SINE Alu 0 313 1 3434 163 77 58 chr21 4422522 4422913 -30484657 - L1M LINE L1 -997 5149 4763 2239 110 7 0 chr21 4422913 4423221 -30484349 - AluSx SINE Alu 0 312 3 3434 163 77 58 chr21 4423221 4423463 -30484107 - L1M LINE L1 -1383 4763 4527 883 188 6 0 chr21 4423466 4423647 -30483923 + L1 LINE L1 4172 4353 -1793 26 50 0 0 chr21 4423750 4423790 -30483780 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr21 4424171 4424199 -30483371 + AT_rich Low_complexity Low_complexity 1 28 0 1975 187 15 20 chr21 4424631 4425027 -30482543 - MSTD LTR MaLR 0 396 3 725 276 156 16 chr21 4425296 4425876 -30481694 - L2 LINE L2 -4 3309 2635 1490 206 64 18 chr21 4425976 4426306 -30481264 - MER82 DNA MER2_type -107 546 202 928 228 35 0 chr21 4426797 4426994 -30480576 - MER82 DNA MER2_type -449 204 1 1705 150 53 71 chr21 4427024 4427417 -30480153 + MLT1B LTR MaLR 1 386 -4 288 324 18 0 chr21 4427468 4427579 -30479991 - L2 LINE L2 -735 2579 2467 25 0 0 0 chr21 4427819 4427844 -30479726 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr21 4428882 4428911 -30478659 + AT_rich Low_complexity Low_complexity 1 29 0 349 340 5 65 chr21 4429108 4429323 -30478247 - MIR SINE MIR -55 207 6 22 70 0 0 chr21 4431791 4431834 -30475736 + AT_rich Low_complexity Low_complexity 1 43 0 1152 158 32 45 chr21 4431839 4431877 -30475693 + AluJo SINE Alu 3 40 -272 2067 113 76 48 chr21 4431877 4432065 -30475505 - THE1B LTR MaLR 0 364 183 1969 86 16 0 chr21 4432065 4432322 -30475248 - AluY SINE Alu -14 297 37 2067 113 76 48 chr21 4432322 4432487 -30475083 - THE1B LTR MaLR -181 183 1 1152 158 32 45 chr21 4432487 4432669 -30474901 + AluJo SINE Alu 40 220 -92 1474 124 0 5 chr21 4432799 4433009 -30474561 + AluSg/x SINE Alu 97 305 -5 328 352 79 14 chr21 4433013 4433229 -30474341 + L1M4c LINE L1 1026 1255 -5129 611 203 8 0 chr21 4433599 4433722 -30473848 - MER3 DNA MER1_type 0 209 86 445 333 65 53 chr21 4433909 4434230 -30473340 - HAL1 LINE L1 -1745 762 438 499 295 50 75 chr21 4434268 4434546 -30473024 - HAL1 LINE L1 -2132 375 105 689 263 59 59 chr21 4434906 4435161 -30472409 + MIR SINE MIR 6 260 -2 26 0 0 0 chr21 4436315 4436341 -30471229 + AT_rich Low_complexity Low_complexity 1 26 0 581 297 98 14 chr21 4437268 4437685 -30469885 - L1M4 LINE L1 -1219 4927 4476 413 309 47 7 chr21 4437774 4437923 -30469647 - L1M4 LINE L1 -1796 4350 4196 764 278 30 36 chr21 4438159 4438561 -30469009 - L1P4 LINE L1 -669 5492 5080 2157 102 6 10 chr21 4438561 4438874 -30468696 - AluSx SINE Alu 0 312 1 764 278 30 36 chr21 4438874 4439025 -30468545 - L1P4 LINE L1 -1081 5080 4930 257 120 40 0 chr21 4439025 4439075 -30468495 + (TA)n Simple_repeat Simple_repeat 1 52 0 729 179 6 48 chr21 4439610 4439778 -30467792 - L1PA15 LINE L1 0 6165 6005 375 178 14 14 chr21 4439969 4440042 -30467528 - Tigger2 DNA MER2_type -2645 73 1 723 274 84 65 chr21 4440253 4440976 -30466594 - L1MEd LINE L1 -4814 1315 580 23 33 0 0 chr21 4444479 4444509 -30463061 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 4444939 4444961 -30462609 + AT_rich Low_complexity Low_complexity 1 22 0 6664 79 0 5 chr21 4445320 4446482 -30461088 - L1PA7 LINE L1 0 6469 5307 25287 122 11 12 chr21 4446482 4451479 -30456091 - L1PA7 LINE L1 -1441 5020 8 22 0 0 0 chr21 4451891 4451913 -30455657 + AT_rich Low_complexity Low_complexity 1 22 0 231 253 114 38 chr21 4453249 4453328 -30454242 - MIR SINE MIR -61 147 63 3416 140 15 2 chr21 4453705 4454225 -30453345 + MER1A DNA MER1_type 1 527 0 316 267 0 12 chr21 4454339 4454425 -30453145 + MIR SINE MIR 173 257 -5 817 121 0 0 chr21 4456108 4456232 -30451338 + MER2 DNA MER2_type 67 190 -154 6052 155 89 6 chr21 4456232 4457076 -30450494 + Tigger3b DNA MER2_type 1 965 -2063 2051 148 44 101 chr21 4457076 4457530 -30450040 - MSTA LTR MaLR 0 428 1 6052 155 89 6 chr21 4457530 4457822 -30449748 + Tigger3b DNA MER2_type 965 1231 0 713 251 103 0 chr21 4457996 4458199 -30449371 - MER58A DNA MER1_type 0 224 1 415 299 45 6 chr21 4458613 4458770 -30448800 + L2 LINE L2 2420 2582 -732 3908 113 41 2 chr21 4459236 4459840 -30447730 - L1PA13 LINE L1 -2 6812 6185 2026 109 0 0 chr21 4459854 4460120 -30447450 - AluSc SINE Alu -8 301 36 14731 180 14 11 chr21 4460120 4463055 -30444515 - L1PA13 LINE L1 -749 6048 3104 2049 216 5 8 chr21 4463045 4463444 -30444126 - L1PA13 LINE L1 -5123 1664 1267 3954 199 24 8 chr21 4463864 4464588 -30442982 - L1PA13 LINE L1 -6049 738 4 12853 138 17 5 chr21 4464605 4466630 -30440940 + Tigger1 DNA MER2_type 103 2150 -268 1487 170 8 0 chr21 4466777 4467036 -30440534 + Tigger1 DNA MER2_type 2158 2418 0 21 0 0 0 chr21 4467251 4467272 -30440298 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 4467526 4467564 -30440006 + AT_rich Low_complexity Low_complexity 1 38 0 2870 6 0 0 chr21 4467742 4468053 -30439517 - AluYa5 SINE Alu 0 311 1 200 204 0 45 chr21 4468227 4468271 -30439299 + L2 LINE L2 3211 3252 -20 18133 29 1 1 chr21 4468312 4471249 -30436321 - L1PA3 LINE L1 -3 6152 3214 208 288 15 30 chr21 4471319 4471385 -30436185 + L2 LINE L2 3196 3260 -12 223 274 0 0 chr21 4471387 4471449 -30436121 + T-rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr21 4472049 4472072 -30435498 + AT_rich Low_complexity Low_complexity 1 23 0 338 0 24 0 chr21 4472779 4472821 -30434749 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 540 202 12 89 chr21 4473636 4473700 -30433870 + MIR SINE MIR 106 173 -89 2038 128 7 3 chr21 4473700 4473997 -30433573 - AluSx SINE Alu -14 298 1 540 202 12 89 chr21 4473997 4474100 -30433470 + MIR SINE MIR 173 260 -2 1668 144 27 33 chr21 4474318 4474617 -30432953 + AluJb SINE Alu 1 297 -15 620 307 9 42 chr21 4474940 4475155 -30432415 + MIR SINE MIR 49 256 -6 2071 135 0 0 chr21 4475509 4475806 -30431764 - AluSg SINE Alu -13 297 1 716 236 33 6 chr21 4476692 4476874 -30430696 + MER5A DNA MER1_type 1 187 -2 22 0 0 0 chr21 4478174 4478196 -30429374 + AT_rich Low_complexity Low_complexity 1 22 0 1779 167 7 0 chr21 4478200 4478499 -30429071 + AluSx SINE Alu 1 301 -11 945 140 11 6 chr21 4478527 4478706 -30428864 + CT-rich Low_complexity Low_complexity 1 180 0 1517 153 68 82 chr21 4478745 4479014 -30428556 - MER46B DNA MER2_type -2496 235 96 1913 58 0 0 chr21 4479014 4479254 -30428316 - L1PA4 LINE L1 -3 6152 5913 1517 153 68 82 chr21 4479254 4479349 -30428221 - MER46B DNA MER2_type -2635 96 1 25 31 0 0 chr21 4479490 4479522 -30428048 + AT_rich Low_complexity Low_complexity 1 32 0 1843 119 56 0 chr21 4479593 4479861 -30427709 - AluSx SINE Alu -10 302 20 977 168 12 0 chr21 4480456 4480629 -30426941 + MER5B DNA MER1_type 4 178 0 761 227 11 6 chr21 4481748 4481924 -30425646 + MER44D DNA MER2_type 3 449 -160 486 200 22 0 chr21 4481957 4482047 -30425523 + MER44D DNA MER2_type 514 605 0 2125 88 0 7 chr21 4482115 4482398 -30425172 - AluSc SINE Alu 0 309 29 378 0 0 0 chr21 4483601 4483643 -30423927 + (A)n Simple_repeat Simple_repeat 1 42 0 396 0 0 0 chr21 4484976 4485020 -30422550 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 295 48 60 chr21 4486230 4486396 -30421174 + MIR3 SINE MIR 32 195 -13 21 0 0 0 chr21 4486522 4486543 -30421027 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr21 4488085 4488112 -30419458 + (TG)n Simple_repeat Simple_repeat 2 28 0 12966 137 50 40 chr21 4488733 4489423 -30418147 - Tigger1 DNA MER2_type 0 2418 1736 2514 69 0 0 chr21 4489423 4489727 -30417843 - AluY SINE Alu -7 304 1 12966 137 50 40 chr21 4489727 4490772 -30416798 - Tigger1 DNA MER2_type -682 1736 702 2637 45 0 0 chr21 4490772 4491083 -30416487 - AluY SINE Alu 0 311 1 12966 137 50 40 chr21 4491083 4491321 -30416249 - Tigger1 DNA MER2_type -1716 702 468 1808 142 51 0 chr21 4491321 4491476 -30416094 - AluSx SINE Alu -21 291 114 213 65 0 0 chr21 4491476 4491507 -30416063 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1808 142 51 0 chr21 4491507 4491626 -30415944 - AluSx SINE Alu -198 114 3 12966 137 50 40 chr21 4491626 4492046 -30415524 - Tigger1 DNA MER2_type -1950 468 1 219 185 19 0 chr21 4492367 4492421 -30415149 + (TA)n Simple_repeat Simple_repeat 2 56 0 295 152 53 12 chr21 4492506 4492677 -30414893 + (TA)n Simple_repeat Simple_repeat 1 178 0 374 287 21 0 chr21 4493761 4493855 -30413715 + MIR SINE MIR 31 126 -136 346 364 35 12 chr21 4496318 4496491 -30411079 - MIR SINE MIR -36 226 50 195 42 0 0 chr21 4496753 4496777 -30410793 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 29 47 0 0 chr21 4496995 4497038 -30410532 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 4497077 4497099 -30410471 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr21 4497181 4497210 -30410360 + AT_rich Low_complexity Low_complexity 1 29 0 321 293 87 7 chr21 4499968 4500118 -30407452 - HAL1 LINE L1 -115 2392 2231 328 244 6 83 chr21 4500128 4500296 -30407274 - HAL1 LINE L1 -309 2198 2044 601 128 8 8 chr21 4500297 4500414 -30407156 + (TCCC)n Simple_repeat Simple_repeat 3 119 0 2137 93 7 10 chr21 4500416 4500705 -30406865 - AluSx SINE Alu -14 298 11 267 331 6 11 chr21 4500706 4500814 -30406756 + CT-rich Low_complexity Low_complexity 3 177 0 223 47 0 47 chr21 4501131 4501174 -30406396 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 501 231 0 16 chr21 4501204 4501325 -30406245 + MLT1D LTR MaLR 365 483 -22 559 201 13 0 chr21 4501592 4501741 -30405829 + C-rich Low_complexity Low_complexity 1 151 0 2312 103 0 0 chr21 4501946 4502327 -30405243 + AluSg SINE Alu 1 381 0 267 315 117 49 chr21 4502592 4502644 -30404926 - L2 LINE L2 -459 2855 2808 225 0 0 0 chr21 4502644 4502669 -30404901 + (TTA)n Simple_repeat Simple_repeat 2 26 0 267 315 117 49 chr21 4502669 4502924 -30404646 - L2 LINE L2 -506 2808 2527 869 196 29 0 chr21 4503341 4503514 -30404056 - AluJo SINE Alu -134 178 1 584 174 7 20 chr21 4505628 4505777 -30401793 + CT-rich Low_complexity Low_complexity 3 149 0 946 310 58 19 chr21 4506690 4507067 -30400503 + L2 LINE L2 2922 3313 0 313 350 0 0 chr21 4507086 4507209 -30400361 - L1ME LINE L1 -521 5600 5478 2149 90 3 10 chr21 4507266 4507567 -30400003 - AluSg SINE Alu -3 307 9 3018 138 15 4 chr21 4507739 4508219 -30399351 - L1PA16 LINE L1 -14 6152 5668 37 23 0 0 chr21 4509756 4509800 -30397770 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr21 4510565 4510590 -30396980 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 4511694 4511716 -30395854 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr21 4515143 4515176 -30392394 + (TG)n Simple_repeat Simple_repeat 1 33 0 2197 93 7 29 chr21 4515615 4515925 -30391645 - AluSc SINE Alu -5 304 2 659 176 0 8 chr21 4517893 4518012 -30389558 - MSTD LTR MaLR -1 395 278 4508 80 20 2 chr21 4518082 4518694 -30388876 - L1PA10 LINE L1 -10 6158 5536 848 222 38 5 chr21 4518817 4519002 -30388568 - MSTD LTR MaLR -205 191 1 188 386 51 0 chr21 4519072 4519248 -30388322 + L2 LINE L2 2040 2224 -1090 621 321 64 0 chr21 4519548 4519797 -30387773 - LTR16C LTR ERVL -222 269 5 419 308 23 68 chr21 4519812 4520078 -30387492 - L1ME LINE L1 -372 5749 5496 2481 74 0 13 chr21 4520078 4520387 -30387183 - AluSp SINE Alu -8 305 1 2196 122 0 10 chr21 4521261 4521565 -30386005 - AluSx SINE Alu -9 303 3 300 348 22 0 chr21 4521631 4521723 -30385847 - L2 LINE L2 -15 3298 3205 1980 112 3 75 chr21 4523772 4524092 -30383478 + AluSx SINE Alu 4 300 -12 26 64 0 0 chr21 4524197 4524244 -30383326 + AT_rich Low_complexity Low_complexity 1 47 0 26 82 0 0 chr21 4524930 4524991 -30382579 + AT_rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr21 4525809 4525836 -30381734 + (CA)n Simple_repeat Simple_repeat 2 28 0 2050 106 7 0 chr21 4527228 4527510 -30380060 + AluSx SINE Alu 1 284 -28 1216 131 11 0 chr21 4527510 4527538 -30380032 + AluSq SINE Alu 1 312 0 23 33 0 0 chr21 4528843 4528873 -30378697 + AT_rich Low_complexity Low_complexity 1 30 0 286 300 92 8 chr21 4529240 4529370 -30378200 - MLT1J2 LTR MaLR -263 187 47 2013 127 7 10 chr21 4532509 4532809 -30374761 - AluSp SINE Alu -13 300 2 355 306 90 0 chr21 4534594 4534738 -30372832 + MIR SINE MIR 50 206 -56 344 111 16 0 chr21 4536044 4536107 -30371463 + (TA)n Simple_repeat Simple_repeat 1 64 0 2494 67 0 10 chr21 4536109 4536446 -30371124 - AluY SINE Alu 0 334 1 24 0 0 0 chr21 4536456 4536480 -30371090 + AT_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr21 4537908 4537940 -30369630 + (TG)n Simple_repeat Simple_repeat 2 33 0 2123 121 16 0 chr21 4537944 4538251 -30369319 - AluSp SINE Alu -1 312 1 342 0 0 0 chr21 4538631 4538669 -30368901 + (TA)n Simple_repeat Simple_repeat 2 39 0 209 330 94 66 chr21 4538685 4539003 -30368567 - L2 LINE L2 -1387 1927 1601 332 278 7 69 chr21 4539395 4539539 -30368031 + L2 LINE L2 2614 2748 -566 254 273 71 30 chr21 4541800 4541899 -30365671 + MIR SINE MIR 44 146 -62 29731 109 19 10 chr21 4542162 4548538 -30359032 + L1PA7 LINE L1 1 6464 -5 26 0 0 0 chr21 4549095 4549121 -30358449 + AT_rich Low_complexity Low_complexity 1 26 0 757 252 25 10 chr21 4549926 4550124 -30357446 + MIR SINE MIR 46 246 -16 21 36 0 0 chr21 4550561 4550589 -30356981 + AT_rich Low_complexity Low_complexity 1 28 0 305 143 0 0 chr21 4551284 4551333 -30356237 - L1MC4 LINE L1 -1339 6703 6655 1793 174 0 10 chr21 4551333 4551631 -30355939 - AluSx SINE Alu -7 305 11 203 328 15 0 chr21 4552394 4552461 -30355109 - L2 LINE L2 0 3272 3205 25 31 0 0 chr21 4552701 4552733 -30354837 + AT_rich Low_complexity Low_complexity 1 32 0 386 323 47 28 chr21 4553788 4554042 -30353528 - L3 LINE CR1 -593 984 726 27 62 0 0 chr21 4555012 4555060 -30352510 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr21 4555119 4555149 -30352421 + AT_rich Low_complexity Low_complexity 1 30 0 270 246 15 0 chr21 4555393 4555458 -30352112 - MER5B DNA MER1_type -3 175 110 259 206 137 14 chr21 4555463 4555536 -30352034 + L1MA10 LINE L1 6213 6294 -40 446 319 0 8 chr21 4555624 4555743 -30351827 - MER5B DNA MER1_type -59 119 2 251 209 0 70 chr21 4555810 4555896 -30351674 - L1MC4 LINE L1 -1339 6703 6624 180 0 0 0 chr21 4555896 4555916 -30351654 + (TG)n Simple_repeat Simple_repeat 2 21 0 1731 167 7 10 chr21 4555933 4556226 -30351344 - AluJo SINE Alu -20 292 1 1418 142 0 9 chr21 4556276 4556487 -30351083 + AluJb SINE Alu 87 295 -17 2030 142 7 0 chr21 4557354 4557663 -30349907 - AluSx SINE Alu 0 312 2 683 192 0 0 chr21 4558611 4558731 -30348839 - FLAM_A SINE Alu -13 129 10 21 0 0 0 chr21 4558849 4558870 -30348700 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr21 4560742 4560772 -30346798 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr21 4561613 4561651 -30345919 + AT_rich Low_complexity Low_complexity 1 38 0 2059 133 3 7 chr21 4561998 4562307 -30345263 + AluSx SINE Alu 5 312 0 23 33 0 0 chr21 4562694 4562724 -30344846 + AT_rich Low_complexity Low_complexity 1 30 0 1612 199 6 18 chr21 4564333 4564670 -30342900 - MLT1A1 LTR MaLR -7 358 26 22 0 0 0 chr21 4565316 4565338 -30342232 + AT_rich Low_complexity Low_complexity 1 22 0 2034 124 7 0 chr21 4565548 4565847 -30341723 + AluSx SINE Alu 1 301 -11 387 0 0 0 chr21 4565866 4565909 -30341661 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2069 101 0 37 chr21 4565909 4566207 -30341363 - AluSx SINE Alu -25 287 1 2008 121 50 0 chr21 4567585 4567883 -30339687 - AluSq SINE Alu 0 313 1 186 167 0 0 chr21 4569060 4569096 -30338474 + (TA)n Simple_repeat Simple_repeat 2 37 0 1348 96 5 11 chr21 4569203 4569420 -30338150 - AluSg/x SINE Alu 0 322 107 506 139 13 0 chr21 4569454 4569533 -30338037 - L1PB4 LINE L1 -12 6144 6065 1816 159 43 35 chr21 4571495 4571866 -30335704 - THE1C LTR MaLR -1 374 1 24 32 0 0 chr21 4575916 4575947 -30331623 + AT_rich Low_complexity Low_complexity 1 31 0 255 208 21 10 chr21 4577735 4577831 -30329739 + (TA)n Simple_repeat Simple_repeat 2 98 0 364 307 45 12 chr21 4577919 4578163 -30329407 + HAL1b LINE L1 629 880 -468 303 28 0 0 chr21 4578414 4578450 -30329120 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 252 0 0 0 chr21 4578567 4578595 -30328975 + (T)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr21 4579195 4579219 -30328351 + AT_rich Low_complexity Low_complexity 1 24 0 2155 108 7 0 chr21 4580572 4580867 -30326703 - AluSq SINE Alu -16 297 1 341 245 127 10 chr21 4581005 4581132 -30326438 + MIR SINE MIR 62 200 -62 311 78 20 0 chr21 4581679 4581730 -30325840 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 184 265 153 31 chr21 4582393 4582491 -30325079 + MIR3 SINE MIR 93 202 -6 1704 103 0 0 chr21 4583344 4583567 -30324003 + AluSg/x SINE Alu 76 298 -12 219 333 78 11 chr21 4585628 4585718 -30321852 - L2 LINE L2 -15 3298 3203 639 294 72 8 chr21 4587775 4588010 -30319560 - MIR SINE MIR -10 252 3 1042 208 30 118 chr21 4588901 4589301 -30318269 - MLT1A1 LTR MaLR 0 365 1 313 214 0 0 chr21 4589352 4589408 -30318162 - Charlie5 DNA MER1_type -2556 56 1 198 0 0 0 chr21 4590948 4590970 -30316600 + (A)n Simple_repeat Simple_repeat 1 22 0 239 104 21 0 chr21 4590990 4591038 -30316532 + (GA)n Simple_repeat Simple_repeat 2 50 0 2319 107 0 0 chr21 4591365 4591664 -30315906 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr21 4591683 4591720 -30315850 + AT_rich Low_complexity Low_complexity 1 37 0 1989 147 0 0 chr21 4592935 4593235 -30314335 + AluSx SINE Alu 1 300 -12 438 310 99 6 chr21 4594015 4594186 -30313384 - MIR SINE MIR -62 200 14 269 380 82 0 chr21 4594719 4594877 -30312693 - MIR SINE MIR -87 175 5 1276 208 64 69 chr21 4595182 4595571 -30311999 - MLT1B LTR MaLR -3 387 1 26 0 0 0 chr21 4596408 4596434 -30311136 + AT_rich Low_complexity Low_complexity 1 26 0 423 0 0 0 chr21 4602492 4602539 -30305031 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr21 4602779 4602804 -30304766 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr21 4602856 4602893 -30304677 + AT_rich Low_complexity Low_complexity 1 37 0 199 310 0 46 chr21 4604849 4604936 -30302634 + MIR SINE MIR 59 141 -121 183 42 0 0 chr21 4608061 4608085 -30299485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2624 10 0 7 chr21 4608145 4608445 -30299125 - AluYb8 SINE Alu -17 301 4 1000 322 94 26 chr21 4610293 4611197 -30296373 + L2 LINE L2 2339 3309 -4 729 153 0 0 chr21 4611486 4611597 -30295973 + AluSg/x SINE Alu 171 281 -29 2778 0 0 7 chr21 4613886 4614194 -30293376 - AluY SINE Alu -5 306 1 677 208 13 13 chr21 4614194 4614343 -30293227 - L1MD3 LINE L1 -7 7988 7837 1160 106 12 0 chr21 4614400 4614586 -30292984 + AluSp SINE Alu 120 307 0 904 322 42 21 chr21 4615185 4615592 -30291978 + L2 LINE L2 2420 2838 -476 2285 128 11 13 chr21 4615592 4615968 -30291602 + THE1C LTR MaLR 1 375 0 904 322 42 21 chr21 4615968 4615986 -30291584 + L2 LINE L2 2838 2854 -460 1012 91 0 0 chr21 4617030 4617162 -30290408 + AluSg SINE Alu 2 133 -177 2428 88 0 0 chr21 4617162 4617470 -30290100 + AluSg SINE Alu 1 308 -2 25 51 0 0 chr21 4617960 4617999 -30289571 + AT_rich Low_complexity Low_complexity 1 39 0 1549 162 52 0 chr21 4619001 4619273 -30288297 + AluSx SINE Alu 1 286 -26 22 35 0 0 chr21 4620518 4620547 -30287023 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 4621459 4621487 -30286083 + AT_rich Low_complexity Low_complexity 1 28 0 853 176 176 32 chr21 4621677 4621955 -30285615 + L1MA9 LINE L1 5995 6312 0 222 109 0 65 chr21 4623547 4623593 -30283977 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 23 33 0 0 chr21 4624205 4624235 -30283335 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 4624805 4624831 -30282739 + AT_rich Low_complexity Low_complexity 1 26 0 229 323 15 0 chr21 4629945 4630010 -30277560 + L2 LINE L2 3248 3313 0 827 256 5 28 chr21 4630493 4630704 -30276866 - MER63A DNA MER1_type -4 206 1 250 64 43 0 chr21 4631842 4631889 -30275681 + LTR66 LTR ERVL 173 221 -389 27 29 0 0 chr21 4632602 4632636 -30274934 + AT_rich Low_complexity Low_complexity 1 34 0 28 91 0 0 chr21 4633513 4633590 -30273980 + AT_rich Low_complexity Low_complexity 1 77 0 363 229 17 8 chr21 4633874 4634121 -30273449 + (TA)n Simple_repeat Simple_repeat 1 249 0 368 200 13 0 chr21 4634600 4634675 -30272895 - MER5A DNA MER1_type -87 102 27 293 309 67 57 chr21 4634670 4634880 -30272690 + MIR SINE MIR 7 218 -44 290 311 0 0 chr21 4635057 4635131 -30272439 - L2 LINE L2 0 3272 3199 182 333 50 0 chr21 4636618 4636678 -30270892 - L2 LINE L2 -5 3308 3246 689 313 40 36 chr21 4636752 4637277 -30270293 - L2 LINE L2 -158 3155 2636 191 114 29 0 chr21 4637464 4637499 -30270071 + CT-rich Low_complexity Low_complexity 1 36 0 690 324 26 22 chr21 4637779 4638051 -30269519 - L2 LINE L2 -832 2482 2210 23 0 0 0 chr21 4638167 4638190 -30269380 + AT_rich Low_complexity Low_complexity 1 23 0 277 305 32 21 chr21 4638299 4638394 -30269176 + MER5A DNA MER1_type 7 102 -87 24 53 0 0 chr21 4638540 4638578 -30268992 + AT_rich Low_complexity Low_complexity 1 38 0 209 205 0 0 chr21 4640262 4640301 -30267269 + (TATG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr21 4641056 4641079 -30266491 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 4642025 4642050 -30265520 + AT_rich Low_complexity Low_complexity 1 25 0 292 174 41 0 chr21 4642421 4642542 -30265028 + (TA)n Simple_repeat Simple_repeat 1 126 0 262 211 63 0 chr21 4643461 4643556 -30264014 + (TA)n Simple_repeat Simple_repeat 2 102 0 398 19 0 19 chr21 4643757 4643809 -30263761 + (TG)n Simple_repeat Simple_repeat 2 52 0 700 295 52 71 chr21 4643896 4644438 -30263132 - L2 LINE L2 0 3313 2730 2136 109 3 0 chr21 4644497 4644790 -30262780 + AluSc SINE Alu 1 294 -15 23 68 0 0 chr21 4645657 4645701 -30261869 + AT_rich Low_complexity Low_complexity 1 44 0 212 264 40 80 chr21 4647476 4647601 -30259969 + L3 LINE CR1 842 961 -616 221 264 28 42 chr21 4648839 4648911 -30258659 - MER5A DNA MER1_type -110 79 9 398 299 9 23 chr21 4649033 4649177 -30258393 + MIR SINE MIR 26 169 -39 288 237 53 0 chr21 4649235 4649311 -30258259 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr21 4649710 4649732 -30257838 + AT_rich Low_complexity Low_complexity 1 22 0 1224 114 0 0 chr21 4650346 4650522 -30257048 - AluSg/x SINE Alu -10 300 125 1910 233 59 0 chr21 4650548 4651000 -30256570 + L1MB3 LINE L1 5610 6086 -97 1067 127 38 139 chr21 4651343 4651610 -30255960 - MLT1A1 LTR MaLR -125 240 1 198 291 93 12 chr21 4651637 4651723 -30255847 + MIR SINE MIR 170 262 0 2210 119 3 0 chr21 4651975 4652287 -30255283 - AluSp SINE Alu 0 313 1 229 296 25 37 chr21 4652444 4652525 -30255045 - MIR SINE MIR -110 98 19 2336 66 7 3 chr21 4652931 4653232 -30254338 - AluY SINE Alu -9 302 1 28 79 0 0 chr21 4654248 4654311 -30253259 + AT_rich Low_complexity Low_complexity 1 63 0 657 247 98 0 chr21 4655343 4655517 -30252053 + MIR SINE MIR 11 201 -61 23 33 0 0 chr21 4656793 4656823 -30250747 + AT_rich Low_complexity Low_complexity 1 30 0 229 159 32 0 chr21 4657793 4657856 -30249714 + (TA)n Simple_repeat Simple_repeat 2 66 0 241 308 15 0 chr21 4658249 4658314 -30249256 - L3 LINE CR1 -1 1576 1511 1708 168 85 0 chr21 4658860 4659188 -30248382 - MER93b LTR ERV1 -17 356 1 220 208 151 82 chr21 4659629 4659788 -30247782 - L2 LINE L2 -55 3258 3089 37 39 0 0 chr21 4659983 4660034 -30247536 + AT_rich Low_complexity Low_complexity 1 51 0 379 310 60 19 chr21 4660269 4660485 -30247085 - L1MEd LINE L1 -5084 1035 811 22 0 0 0 chr21 4661464 4661486 -30246084 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr21 4662985 4663028 -30244542 + AT_rich Low_complexity Low_complexity 1 43 0 440 319 43 34 chr21 4664078 4664313 -30243257 + MIR SINE MIR 26 262 0 1774 179 3 3 chr21 4666749 4667039 -30240531 - AluJb SINE Alu -22 290 1 25 65 0 0 chr21 4667304 4667350 -30240220 + AT_rich Low_complexity Low_complexity 1 46 0 229 220 0 0 chr21 4667442 4667492 -30240078 + A-rich Low_complexity Low_complexity 1 50 0 1908 135 3 26 chr21 4667508 4667811 -30239759 - AluSp SINE Alu -17 296 1 1122 209 106 32 chr21 4668054 4668394 -30239176 - MLT1A1 LTR MaLR 0 365 1 633 211 106 19 chr21 4668404 4668565 -30239005 - MLT1A1-int LTR MaLR -11 1724 1550 518 279 55 40 chr21 4668643 4668844 -30238726 - L1ME LINE L1 -303 5818 5615 255 61 0 0 chr21 4669202 4669235 -30238335 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1873 117 50 73 chr21 4669260 4669644 -30237926 + THE1C LTR MaLR 1 375 0 470 199 109 51 chr21 4669697 4669853 -30237717 + MER50 LTR ERV1 1 165 -569 1648 197 90 57 chr21 4669918 4670395 -30237175 + MER50 LTR ERV1 240 732 -2 871 317 68 36 chr21 4670727 4670953 -30236617 - L2 LINE L2 -378 2936 2719 2551 41 0 10 chr21 4670953 4671116 -30236454 - AluY SINE Alu 0 311 1 1205 53 0 7 chr21 4671117 4671267 -30236303 - AluY SINE Alu -162 149 1 473 323 77 19 chr21 4671268 4671550 -30236020 - L2 LINE L2 -600 2714 2450 2401 109 14 0 chr21 4671550 4671900 -30235670 + THE1A LTR MaLR 1 355 0 473 323 77 19 chr21 4671900 4672104 -30235466 - L2 LINE L2 -864 2450 2180 244 300 81 19 chr21 4672827 4672987 -30234583 - MIR SINE MIR -46 216 47 200 299 0 13 chr21 4673000 4673077 -30234493 + (TA)n Simple_repeat Simple_repeat 2 77 0 21 0 0 0 chr21 4673354 4673375 -30234195 + AT_rich Low_complexity Low_complexity 1 21 0 2008 133 0 7 chr21 4674132 4674425 -30233145 - AluSx SINE Alu -21 291 1 2074 76 0 0 chr21 4674912 4675174 -30232396 + AluY SINE Alu 37 298 -13 396 0 0 0 chr21 4675327 4675371 -30232199 + (TG)n Simple_repeat Simple_repeat 2 45 0 5020 153 27 3 chr21 4676509 4677396 -30230174 - L1MA6 LINE L1 0 6300 5393 672 90 69 3 chr21 4677396 4677717 -30229853 + (TA)n Simple_repeat Simple_repeat 1 342 0 225 62 92 0 chr21 4677735 4677800 -30229770 + (TA)n Simple_repeat Simple_repeat 1 71 0 447 60 104 12 chr21 4677818 4678069 -30229501 + (TA)n Simple_repeat Simple_repeat 1 274 0 26 0 0 0 chr21 4678069 4678095 -30229475 + AT_rich Low_complexity Low_complexity 1 26 0 3022 148 34 40 chr21 4678095 4678771 -30228799 - L1MA6 LINE L1 -759 5387 4716 1599 145 62 6 chr21 4678790 4679115 -30228455 + L1MA5A LINE L1 5955 6297 0 287 138 0 0 chr21 4679120 4679178 -30228392 + L1MA4A LINE L1 6241 6298 -5 24 32 0 0 chr21 4679215 4679246 -30228324 + AT_rich Low_complexity Low_complexity 1 31 0 2919 9 0 0 chr21 4679374 4679690 -30227880 - AluYb8 SINE Alu -2 316 1 191 306 82 41 chr21 4680657 4680755 -30226815 + MIR3 SINE MIR 84 185 -23 204 188 0 0 chr21 4682319 4682351 -30225219 + polypyrimidine Low_complexity Low_complexity 1 32 0 264 224 0 0 chr21 4682452 4682519 -30225051 + (TA)n Simple_repeat Simple_repeat 1 67 0 36 53 0 0 chr21 4682522 4682579 -30224991 + AT_rich Low_complexity Low_complexity 1 57 0 1889 97 23 0 chr21 4683165 4683339 -30224231 - AluSg SINE Alu -7 303 120 192 40 0 0 chr21 4683339 4683364 -30224206 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1889 97 23 0 chr21 4683364 4683447 -30224123 - AluSg SINE Alu -190 120 40 23 54 0 0 chr21 4686224 4686261 -30221309 + AT_rich Low_complexity Low_complexity 1 37 0 2213 108 3 23 chr21 4686280 4686585 -30220985 + AluSx SINE Alu 2 300 -12 261 0 0 0 chr21 4687066 4687095 -30220475 + (A)n Simple_repeat Simple_repeat 1 29 0 2177 92 3 0 chr21 4687098 4687380 -30220190 + AluSq SINE Alu 1 283 -30 26 64 0 0 chr21 4689403 4689450 -30218120 + AT_rich Low_complexity Low_complexity 1 47 0 606 312 12 47 chr21 4689468 4689601 -30217969 + MIR SINE MIR 19 140 -122 2118 117 0 25 chr21 4689601 4689917 -30217653 + AluSx SINE Alu 1 308 -4 606 312 12 47 chr21 4689917 4690036 -30217534 + MIR SINE MIR 140 262 0 671 310 113 43 chr21 4690377 4691022 -30216548 + L2 LINE L2 2635 3313 0 2272 105 0 3 chr21 4691130 4691424 -30216146 + AluSg SINE Alu 1 293 -17 258 282 0 0 chr21 4695603 4695706 -30211864 + (TA)n Simple_repeat Simple_repeat 1 103 0 239 79 0 26 chr21 4697448 4697486 -30210084 + HSMAR1 DNA Mariner 1 37 -1250 999 50 0 0 chr21 4697759 4697879 -30209691 - AluY SINE Alu -1 310 191 29 28 0 0 chr21 4699523 4699559 -30208011 + AT_rich Low_complexity Low_complexity 1 36 0 633 278 15 30 chr21 4701542 4701740 -30205830 - L2 LINE L2 0 3313 3119 1024 179 58 29 chr21 4701741 4701948 -30205622 + AluJb SINE Alu 2 214 -98 337 343 37 0 chr21 4701977 4702085 -30205485 - L2 LINE L2 -254 3059 2948 2225 117 7 0 chr21 4703789 4704098 -30203472 - AluSx SINE Alu -1 311 1 22 0 0 0 chr21 4705205 4705227 -30202343 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 4705342 4705365 -30202205 + AT_rich Low_complexity Low_complexity 1 23 0 1172 262 35 11 chr21 4705476 4705842 -30201728 - L1MC4a LINE L1 -7 7801 7427 2508 179 71 54 chr21 4706156 4706459 -30201111 - MLT2B3 LTR ERVL -8 546 229 3381 127 39 6 chr21 4706459 4706995 -30200575 - MER41C LTR ERV1 0 554 1 2508 179 71 54 chr21 4706995 4707228 -30200342 - MLT2B3 LTR ERVL -325 229 1 184 264 54 78 chr21 4707530 4707659 -30199911 + L2 LINE L2 1796 1921 -1393 2510 74 0 0 chr21 4708382 4708692 -30198878 - AluY SINE Alu -1 310 1 899 126 0 20 chr21 4709790 4709941 -30197629 - LTR7 LTR ERV1 0 450 303 833 135 30 31 chr21 4710220 4710388 -30197182 - LTR7 LTR ERV1 -232 218 1 3416 133 6 9 chr21 4710388 4710931 -30196639 - HERVH LTR ERV1 0 7713 7173 26 0 0 0 chr21 4710943 4710969 -30196601 + AT_rich Low_complexity Low_complexity 1 26 0 950 131 7 0 chr21 4710985 4711130 -30196440 - HERVH LTR ERV1 -765 6948 6803 252 0 0 0 chr21 4711132 4711160 -30196410 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6678 39 4 0 chr21 4711160 4711964 -30195606 - L1PA3 LINE L1 -18 6137 5331 1696 206 3 0 chr21 4711964 4712290 -30195280 - HERVH LTR ERV1 -898 6815 6489 5471 228 22 17 chr21 4712290 4714085 -30193485 - HERVH LTR ERV1 -3184 5235 2790 8535 144 7 38 chr21 4714059 4715556 -30192014 - HERVH LTR ERV1 -5275 2438 989 896 191 64 20 chr21 4715566 4715770 -30191800 - LTR7 LTR ERV1 0 450 238 882 123 10 20 chr21 4716199 4716367 -30191203 - LTR7 LTR ERV1 -232 218 1 1911 163 31 98 chr21 4717987 4718265 -30189305 - MER21B LTR ERV1 -49 814 519 2217 105 0 3 chr21 4718265 4718561 -30189009 - AluSg SINE Alu -13 297 3 2079 124 3 7 chr21 4718567 4718874 -30188696 - AluSq SINE Alu -7 306 1 1911 163 31 98 chr21 4718874 4719036 -30188534 - MER21B LTR ERV1 -349 514 397 813 188 74 0 chr21 4719036 4719185 -30188385 + AluSg/x SINE Alu 135 294 -16 1314 211 8 31 chr21 4719208 4719468 -30188102 - MER21B LTR ERV1 -460 403 150 14134 150 46 16 chr21 4719576 4721169 -30186401 - Tigger2 DNA MER2_type -4 2714 1002 2072 102 44 0 chr21 4721169 4721462 -30186108 - AluSx SINE Alu -6 306 1 14134 150 46 16 chr21 4721462 4722495 -30185075 - Tigger2 DNA MER2_type -1716 1002 1 192 40 0 0 chr21 4723338 4723363 -30184207 + (CA)n Simple_repeat Simple_repeat 2 26 0 855 239 4 31 chr21 4723497 4723618 -30183952 + AluJo SINE Alu 1 115 -197 216 0 0 0 chr21 4723618 4723642 -30183928 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 855 239 4 31 chr21 4723642 4723746 -30183824 + AluJo SINE Alu 115 220 -92 626 122 0 13 chr21 4723746 4723877 -30183693 + AluSg/x SINE Alu 86 288 -21 452 335 6 12 chr21 4724755 4724919 -30182651 + MIR SINE MIR 68 230 -32 547 205 5 32 chr21 4725364 4725549 -30182021 + GA-rich Low_complexity Low_complexity 1 180 0 2427 258 45 32 chr21 4727066 4727764 -30179806 - L1MC3 LINE L1 -12 7915 7228 17755 44 6 0 chr21 4727764 4730817 -30176753 - L1PA5 LINE L1 -8 6146 3146 2427 258 45 32 chr21 4730817 4730975 -30176595 - L1MC3 LINE L1 -699 7228 7074 288 0 0 0 chr21 4730975 4731007 -30176563 + (GA)n Simple_repeat Simple_repeat 2 33 0 1865 146 7 26 chr21 4731007 4731316 -30176254 + AluSq SINE Alu 3 305 -8 2427 258 45 32 chr21 4731316 4731748 -30175822 - L1MC3 LINE L1 -852 7075 6675 1254 269 24 5 chr21 4731983 4732761 -30174809 - L1M4 LINE L1 -1886 4260 3433 21 36 0 0 chr21 4732790 4732818 -30174752 + AT_rich Low_complexity Low_complexity 1 28 0 387 163 163 31 chr21 4734061 4734159 -30173411 - MLT1E1 LTR MaLR -543 111 1 1954 164 51 0 chr21 4734928 4735299 -30172271 - MLT1B LTR MaLR 0 390 1 276 30 0 0 chr21 4735426 4735459 -30172111 + (TA)n Simple_repeat Simple_repeat 1 33 0 183 80 0 0 chr21 4738165 4738190 -30169380 + (T)n Simple_repeat Simple_repeat 1 25 0 26 50 0 0 chr21 4739731 4739771 -30167799 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr21 4740260 4740290 -30167280 + AT_rich Low_complexity Low_complexity 1 30 0 692 184 7 21 chr21 4743092 4743233 -30164337 - FAM SINE Alu -6 43 1 330 248 150 7 chr21 4745029 4745182 -30162388 - MIR SINE MIR -37 225 51 581 265 42 21 chr21 4746760 4746998 -30160572 - L1ME3 LINE L1 -190 5972 5730 2487 68 0 0 chr21 4747492 4747803 -30159767 - AluY SINE Alu 0 311 1 27 29 0 0 chr21 4748527 4748561 -30159009 + AT_rich Low_complexity Low_complexity 1 34 0 28 48 0 0 chr21 4749804 4749846 -30157724 + AT_rich Low_complexity Low_complexity 1 42 0 329 298 105 18 chr21 4752246 4752417 -30155153 + MIR SINE MIR 18 203 -59 22 0 0 0 chr21 4753288 4753310 -30154260 + AT_rich Low_complexity Low_complexity 1 22 0 213 214 0 0 chr21 4753629 4753671 -30153899 + A-rich Low_complexity Low_complexity 1 42 0 205 364 0 0 chr21 4754453 4754519 -30153051 + MIR SINE MIR 57 122 -140 1955 161 0 3 chr21 4754857 4755162 -30152408 + AluSx SINE Alu 7 310 -2 2174 122 0 0 chr21 4756166 4756469 -30151101 - AluSc SINE Alu -6 303 1 1677 177 7 0 chr21 4757518 4757789 -30149781 + AluJb SINE Alu 1 273 -39 219 36 0 0 chr21 4758216 4758244 -30149326 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2126 127 0 7 chr21 4758319 4758619 -30148951 - AluSx SINE Alu -11 301 4 22 35 0 0 chr21 4758657 4758686 -30148884 + AT_rich Low_complexity Low_complexity 1 29 0 2297 100 0 6 chr21 4759099 4759410 -30148160 + AluSg SINE Alu 1 309 -1 446 361 58 45 chr21 4759809 4760205 -30147365 + L2 LINE L2 2862 3262 -10 297 302 39 77 chr21 4760486 4760668 -30146902 - MIR3 SINE MIR -3 205 31 613 201 7 28 chr21 4760711 4760855 -30146715 - L1MD3 LINE L1 -14 7981 7841 2700 227 59 27 chr21 4760857 4761034 -30146536 - L1MC4a LINE L1 -226 7582 7412 6175 31 1 3 chr21 4761034 4761775 -30145795 - L1PA5 LINE L1 -1 6153 5414 2700 227 59 27 chr21 4761775 4763167 -30144403 - L1MC4a LINE L1 -396 7412 5775 5766 161 58 8 chr21 4763170 4764260 -30143310 + Tigger3b DNA MER2_type 1 1144 -87 583 156 56 56 chr21 4764344 4764504 -30143066 + Tigger3b DNA MER2_type 1072 1231 0 355 280 35 0 chr21 4764506 4764649 -30142921 - L1MC4a LINE L1 -2037 5771 5624 625 290 87 23 chr21 4764803 4764949 -30142621 - L1MC4a LINE L1 -866 5280 5145 1741 119 103 0 chr21 4764949 4765202 -30142368 + AluSg SINE Alu 1 279 -31 625 290 87 23 chr21 4765202 4765852 -30141718 - L1MC4a LINE L1 -1001 5145 4674 428 330 67 19 chr21 4765860 4766442 -30141128 - L1MC4a LINE L1 -1482 4664 4055 340 250 8 8 chr21 4766484 4766606 -30140964 + (TATATG)n Simple_repeat Simple_repeat 4 128 -7 225 0 0 0 chr21 4766606 4766631 -30140939 + (CA)n Simple_repeat Simple_repeat 2 26 0 340 250 8 8 chr21 4766631 4766640 -30140930 + (TATATG)n Simple_repeat Simple_repeat 127 135 0 364 325 50 3 chr21 4766815 4767126 -30140444 - L1MC4a LINE L1 -2315 3831 3502 367 282 71 61 chr21 4767295 4767575 -30139995 - L1MC4a LINE L1 -2812 3334 3052 223 241 13 63 chr21 4767646 4767725 -30139845 - MER5A DNA MER1_type -45 144 70 298 350 17 17 chr21 4771278 4771395 -30136175 - MIR SINE MIR -67 141 25 309 118 0 0 chr21 4771916 4771967 -30135603 + (T)n Simple_repeat Simple_repeat 1 51 0 222 118 0 0 chr21 4772101 4772135 -30135435 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr21 4774863 4774885 -30132685 + AT_rich Low_complexity Low_complexity 1 22 0 247 206 0 22 chr21 4776383 4776475 -30131095 + (TA)n Simple_repeat Simple_repeat 2 91 0 190 295 116 45 chr21 4777130 4777242 -30130328 - L2 LINE L2 -10 3303 3184 2191 130 22 19 chr21 4777664 4778026 -30129544 - THE1B LTR MaLR -1 363 1 23 0 0 0 chr21 4778267 4778290 -30129280 + AT_rich Low_complexity Low_complexity 1 23 0 1713 169 158 11 chr21 4778827 4779200 -30128370 + MSTA LTR MaLR 1 428 0 414 39 0 0 chr21 4780245 4780297 -30127273 + (CA)n Simple_repeat Simple_repeat 1 52 0 1975 157 19 32 chr21 4780700 4781069 -30126501 + THE1B LTR MaLR 1 364 0 11364 90 17 1 chr21 4781069 4782624 -30124946 + THE1B-int LTR MaLR 1 1580 0 2114 141 30 28 chr21 4782624 4782987 -30124583 + THE1B LTR MaLR 1 364 0 238 342 40 33 chr21 4783316 4783468 -30124102 - MER5A DNA MER1_type -21 168 16 209 108 27 0 chr21 4784142 4784179 -30123391 + (TATG)n Simple_repeat Simple_repeat 3 40 0 226 371 89 34 chr21 4784568 4784918 -30122652 + L2 LINE L2 2303 2671 -643 27 73 0 0 chr21 4785034 4785089 -30122481 + AT_rich Low_complexity Low_complexity 1 55 0 186 363 52 36 chr21 4785214 4785407 -30122163 + L2 LINE L2 2807 3002 -270 1721 172 3 34 chr21 4786282 4786602 -30120968 + AluJb SINE Alu 1 310 -2 207 301 14 0 chr21 4787595 4787668 -30119902 - L2 LINE L2 -252 3061 2988 318 278 95 53 chr21 4787853 4788022 -30119548 - L2 LINE L2 -106 3207 3032 246 315 45 36 chr21 4788587 4788698 -30118872 - L2 LINE L2 -1 3312 3201 39 60 0 0 chr21 4789978 4790045 -30117525 + AT_rich Low_complexity Low_complexity 1 67 0 315 231 48 39 chr21 4790471 4790575 -30116995 + MIR SINE MIR 47 151 -111 1591 142 31 3 chr21 4790703 4790991 -30116579 - L1MA3 LINE L1 0 6305 6010 760 203 0 0 chr21 4791041 4791169 -30116401 - FLAM_C SINE Alu -11 132 5 246 286 135 8 chr21 4791397 4791530 -30116040 + L2 LINE L2 3085 3234 -79 24 0 0 0 chr21 4791543 4791567 -30116003 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 4792500 4792521 -30115049 + AT_rich Low_complexity Low_complexity 1 21 0 1398 30 0 12 chr21 4793583 4793751 -30113819 - AluY SINE Alu -7 304 139 21 0 0 0 chr21 4794682 4794703 -30112867 + AT_rich Low_complexity Low_complexity 1 21 0 8943 145 24 20 chr21 4795046 4797770 -30109800 - L1MA1 LINE L1 -6 6296 3566 4000 105 30 49 chr21 4797770 4798466 -30109104 - L1PB1 LINE L1 0 7570 6888 12490 202 14 12 chr21 4798518 4799587 -30107983 - L1PB1 LINE L1 -672 6898 5833 702 35 0 0 chr21 4799587 4799672 -30107898 + (TTTTA)n Simple_repeat Simple_repeat 3 87 0 12490 202 14 12 chr21 4799672 4799691 -30107879 - L1PB1 LINE L1 -1737 5833 5816 2256 71 4 0 chr21 4799691 4800008 -30107562 - AluY SINE Alu 0 318 1 12490 202 14 12 chr21 4800008 4801946 -30105624 - L1PB1 LINE L1 -1754 5816 3863 238 69 86 0 chr21 4801967 4802025 -30105545 + (TA)n Simple_repeat Simple_repeat 2 64 0 482 209 6 49 chr21 4802031 4802194 -30105376 - L1PB1 LINE L1 -3653 3912 3757 272 85 0 0 chr21 4802222 4802269 -30105301 - LTR66 LTR ERVL -392 218 172 509 159 40 17 chr21 4802315 4802491 -30105079 + (TA)n Simple_repeat Simple_repeat 1 180 0 1670 121 11 10 chr21 4802491 4803167 -30104403 - L1PB1 LINE L1 -3689 3876 3141 5556 142 38 8 chr21 4803181 4804114 -30103456 - L1PB1 LINE L1 -5049 2516 1556 273 286 0 0 chr21 4804370 4804433 -30103137 + MIR3 SINE MIR 125 187 -21 22 0 0 0 chr21 4804586 4804608 -30102962 + AT_rich Low_complexity Low_complexity 1 22 0 1787 154 27 10 chr21 4804775 4805068 -30102502 - AluSx SINE Alu -10 302 5 2069 123 3 16 chr21 4806824 4807133 -30100437 - AluSg SINE Alu -5 305 1 285 320 51 27 chr21 4807515 4807771 -30099799 - L1ME4a LINE L1 -104 6017 5756 189 333 53 13 chr21 4808181 4808256 -30099314 + L2 LINE L2 3125 3202 -70 2130 121 0 3 chr21 4808326 4808623 -30098947 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr21 4809579 4809599 -30097971 + (CAA)n Simple_repeat Simple_repeat 2 21 0 311 133 0 17 chr21 4809912 4809972 -30097598 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 1130 244 42 53 chr21 4809983 4810344 -30097226 + MLT1A2 LTR MaLR 3 359 -15 464 254 8 8 chr21 4810473 4810603 -30096967 - L1MC4a LINE L1 -247 7561 7432 191 323 0 0 chr21 4810636 4810698 -30096872 + L2 LINE L2 3248 3309 -4 292 391 6 11 chr21 4811374 4811553 -30096017 + (TG)n Simple_repeat Simple_repeat 1 178 0 196 118 59 0 chr21 4811613 4811647 -30095923 - L2 LINE L2 -956 2358 2323 2081 107 7 20 chr21 4811663 4811963 -30095607 + AluSg SINE Alu 1 296 -14 225 316 17 34 chr21 4813965 4814082 -30093488 - L2 LINE L2 -927 2387 2273 21 0 0 0 chr21 4814354 4814375 -30093195 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr21 4815359 4815401 -30092169 + AT_rich Low_complexity Low_complexity 1 42 0 2261 213 14 24 chr21 4815608 4816162 -30091408 - L1PB1 LINE L1 -762 5384 4836 5132 100 20 18 chr21 4816157 4816944 -30090626 + L1PB1 LINE L1 5361 6149 -2 183 100 0 0 chr21 4817328 4817358 -30090212 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 988 186 37 11 chr21 4818541 4818729 -30088841 - MSTD LTR MaLR 0 396 204 23 33 0 0 chr21 4820547 4820577 -30086993 + AT_rich Low_complexity Low_complexity 1 30 0 303 93 0 0 chr21 4820867 4820910 -30086660 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2176 112 0 7 chr21 4821140 4821444 -30086126 + AluSx SINE Alu 11 312 0 180 0 0 0 chr21 4823535 4823555 -30084015 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2091 147 0 0 chr21 4826025 4826331 -30081239 - AluSx SINE Alu -4 308 3 39 50 0 0 chr21 4826453 4826513 -30081057 + AT_rich Low_complexity Low_complexity 1 60 0 270 95 0 0 chr21 4827129 4827171 -30080399 + (TG)n Simple_repeat Simple_repeat 1 42 0 296 282 14 0 chr21 4827410 4827481 -30080089 + tRNA-Ile-ATT tRNA tRNA 1 72 -5 21 0 0 0 chr21 4828327 4828348 -30079222 + AT_rich Low_complexity Low_complexity 1 21 0 6761 62 10 0 chr21 4829152 4830035 -30077535 - L1PA6 LINE L1 0 6154 5263 1133 151 0 16 chr21 4830378 4830564 -30077006 - AluJb SINE Alu -45 267 85 23 0 0 0 chr21 4831395 4831418 -30076152 + AT_rich Low_complexity Low_complexity 1 23 0 5467 181 38 29 chr21 4831709 4833952 -30073618 - L1PA16 LINE L1 0 6166 3916 207 167 0 0 chr21 4834878 4834920 -30072650 + (CATA)n Simple_repeat Simple_repeat 2 43 0 542 236 0 56 chr21 4834959 4835103 -30072467 - FLAM_A SINE Alu -6 136 1 234 222 30 40 chr21 4835944 4836043 -30071527 + A-rich Low_complexity Low_complexity 5 102 0 260 151 55 0 chr21 4836326 4836399 -30071171 + (TA)n Simple_repeat Simple_repeat 1 77 0 27 0 0 0 chr21 4836399 4836426 -30071144 + AT_rich Low_complexity Low_complexity 1 27 0 653 192 51 0 chr21 4836455 4836611 -30070959 - L1 LINE L1 -1710 4436 4273 22 36 0 55 chr21 4838152 4838207 -30069363 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 4838445 4838483 -30069087 + AT_rich Low_complexity Low_complexity 1 38 0 369 0 0 0 chr21 4838734 4838775 -30068795 + (TG)n Simple_repeat Simple_repeat 2 42 0 2398 67 0 0 chr21 4838775 4839061 -30068509 - AluY SINE Alu -22 289 1 544 28 99 0 chr21 4839206 4839277 -30068293 + L1PA10 LINE L1 5801 5878 -290 1848 136 0 0 chr21 4839541 4839806 -30067764 - AluSq SINE Alu -48 265 1 1206 251 74 3 chr21 4840246 4840557 -30067013 + MER58B DNA MER1_type 7 339 -2 3496 195 76 59 chr21 4840757 4841795 -30065775 - L1MD1 LINE L1 -5 6631 5577 1266 226 67 6 chr21 4841817 4842158 -30065412 - MER34B LTR ERV1 -20 545 184 296 184 9 138 chr21 4842189 4842298 -30065272 - MER34B LTR ERV1 -466 99 5 736 244 30 0 chr21 4842304 4842537 -30065033 - L1MD1 LINE L1 -965 5575 5336 240 149 0 0 chr21 4842556 4842603 -30064967 + (TC)n Simple_repeat Simple_repeat 1 47 0 314 261 0 14 chr21 4842604 4842673 -30064897 - L1MD1 LINE L1 -1208 5332 5265 2156 96 0 4 chr21 4842678 4842959 -30064611 + AluSx SINE Alu 17 296 -16 422 235 0 76 chr21 4842959 4843091 -30064479 - L1MD1 LINE L1 -1268 5272 5151 25 51 0 0 chr21 4843113 4843152 -30064418 + AT_rich Low_complexity Low_complexity 1 39 0 889 279 59 3 chr21 4843187 4843545 -30064025 - L1MD1 LINE L1 -1406 5134 4757 1214 231 0 38 chr21 4843542 4843858 -30063712 - L1MD1 LINE L1 -2057 4483 4180 8775 101 26 8 chr21 4843860 4845052 -30062518 - HSMAR1 DNA Mariner -1 1286 70 2391 73 0 25 chr21 4845052 4845369 -30062201 - AluY SINE Alu -2 309 1 8775 101 26 8 chr21 4845369 4845410 -30062160 - HSMAR1 DNA Mariner -1217 70 31 6587 241 56 49 chr21 4845425 4845626 -30061944 - L1MD1 LINE L1 -2365 4175 3977 2294 108 0 0 chr21 4845626 4845933 -30061637 + AluSq SINE Alu 1 307 -6 6587 241 56 49 chr21 4845933 4846023 -30061547 - L1MD1 LINE L1 -2563 3977 3889 1784 172 0 23 chr21 4846023 4846331 -30061239 - AluJo SINE Alu -11 301 1 6587 241 56 49 chr21 4846331 4847275 -30060295 - L1MD1 LINE L1 -2651 3889 2953 2336 88 7 0 chr21 4847275 4847583 -30059987 + AluSg SINE Alu 1 310 0 6587 241 56 49 chr21 4847583 4850400 -30057170 - L1MD1 LINE L1 -3587 2953 3 362 227 23 11 chr21 4850696 4850784 -30056786 + L2 LINE L2 3225 3313 0 256 250 0 0 chr21 4852784 4852864 -30054706 + T-rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chr21 4853287 4853314 -30054256 + (A)n Simple_repeat Simple_repeat 1 27 0 218 104 0 42 chr21 4853328 4853376 -30054194 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 426 274 131 11 chr21 4858143 4858318 -30049252 + L2 LINE L2 3118 3313 0 24 53 0 0 chr21 4858828 4858866 -30048704 + AT_rich Low_complexity Low_complexity 1 38 0 2073 126 3 3 chr21 4859909 4860210 -30047360 + AluSx SINE Alu 3 303 -9 219 139 0 0 chr21 4860797 4860833 -30046737 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 4740 6 0 0 chr21 4862217 4862751 -30044819 - L1HS LINE L1 0 6155 5622 296 298 83 0 chr21 4863082 4863203 -30044367 - MIR3 SINE MIR -28 180 50 2048 115 10 0 chr21 4863874 4864169 -30043401 + AluSx SINE Alu 8 305 -7 898 209 17 0 chr21 4865650 4865827 -30041743 + MER3 DNA MER1_type 30 209 0 207 224 17 17 chr21 4865976 4866034 -30041536 + T-rich Low_complexity Low_complexity 2 59 0 186 0 0 39 chr21 4866313 4866339 -30041231 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 2126 113 0 0 chr21 4866339 4866621 -30040949 - AluSg SINE Alu -28 282 1 32 43 0 0 chr21 4866879 4866925 -30040645 + AT_rich Low_complexity Low_complexity 1 46 0 703 227 78 0 chr21 4867079 4867233 -30040337 + FRAM SINE Alu 1 165 -11 22 56 0 0 chr21 4867418 4867454 -30040116 + AT_rich Low_complexity Low_complexity 1 36 0 2112 163 52 45 chr21 4867481 4867696 -30039874 - Tigger2 DNA MER2_type 0 2718 2506 2193 96 3 26 chr21 4867696 4867999 -30039571 + AluSp SINE Alu 1 296 -17 2112 163 52 45 chr21 4867999 4868225 -30039345 - Tigger2 DNA MER2_type -212 2506 2274 424 188 0 0 chr21 4868216 4868285 -30039285 - Tigger2 DNA MER2_type -2649 69 1 304 321 100 38 chr21 4869368 4869608 -30037962 + MIR SINE MIR 7 261 -1 207 0 0 0 chr21 4869721 4869744 -30037826 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr21 4870401 4870429 -30037141 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 4870580 4870601 -30036969 + AT_rich Low_complexity Low_complexity 1 21 0 2248 103 3 0 chr21 4871077 4871377 -30036193 - AluSx SINE Alu -11 301 1 313 227 0 0 chr21 4871648 4871723 -30035847 - MER53 DNA DNA -12 177 103 31 26 0 0 chr21 4871914 4871952 -30035618 + AT_rich Low_complexity Low_complexity 1 38 0 2303 93 0 3 chr21 4872876 4873188 -30034382 + AluSq SINE Alu 1 311 -2 1487 74 15 0 chr21 4873756 4873958 -30033612 - AluY SINE Alu -10 301 97 218 330 99 73 chr21 4874408 4874531 -30033039 + MIR SINE MIR 23 141 -121 2648 39 0 0 chr21 4874531 4874841 -30032729 + AluY SINE Alu 2 311 0 218 330 99 73 chr21 4874841 4874950 -30032620 + MIR SINE MIR 141 261 -1 246 62 0 0 chr21 4875713 4875745 -30031825 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 1984 161 0 0 chr21 4876093 4876397 -30031173 + AluSx SINE Alu 5 308 -4 293 138 155 0 chr21 4876402 4876460 -30031110 + MIR3 SINE MIR 114 180 -28 1071 189 0 11 chr21 4876467 4876657 -30030913 + AluSg/x SINE Alu 110 297 -13 334 338 153 6 chr21 4876957 4877114 -30030456 + MIR SINE MIR 31 210 -52 294 326 41 20 chr21 4878876 4878974 -30028596 - MIR SINE MIR -150 112 13 185 237 171 13 chr21 4880045 4880121 -30027449 - MIR SINE MIR -126 136 49 409 314 115 13 chr21 4880137 4880293 -30027277 - L2 LINE L2 0 3272 3101 2047 96 58 0 chr21 4881213 4881504 -30026066 - AluSx SINE Alu -4 308 1 1978 113 7 0 chr21 4881939 4882245 -30025325 + AluSq SINE Alu 2 309 0 778 167 0 8 chr21 4883296 4883428 -30024142 + FLAM_C SINE Alu 1 131 -2 24 32 0 0 chr21 4883967 4883998 -30023572 + AT_rich Low_complexity Low_complexity 1 31 0 815 107 21 43 chr21 4888618 4888758 -30018812 + L1MA3 LINE L1 6169 6305 0 2100 100 0 0 chr21 4890552 4890833 -30016737 - AluY SINE Alu -30 281 1 280 336 82 16 chr21 4891196 4891318 -30016252 + MIR SINE MIR 34 163 -99 24 0 0 0 chr21 4892563 4892587 -30014983 + AT_rich Low_complexity Low_complexity 1 24 0 207 69 0 0 chr21 4892740 4892769 -30014801 + (TC)n Simple_repeat Simple_repeat 2 30 0 288 70 0 0 chr21 4892789 4892832 -30014738 + (CA)n Simple_repeat Simple_repeat 1 43 0 1979 86 6 60 chr21 4893083 4893434 -30014136 + AluSg SINE Alu 1 310 0 1984 94 43 0 chr21 4893454 4893730 -30013840 + AluSc SINE Alu 1 288 -21 22 56 0 0 chr21 4893915 4893951 -30013619 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 4894423 4894461 -30013109 + AT_rich Low_complexity Low_complexity 1 38 0 558 166 34 40 chr21 4895142 4895317 -30012253 + (TATATG)n Simple_repeat Simple_repeat 3 176 0 486 184 39 39 chr21 4895342 4895521 -30012049 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr21 4899352 4899373 -30008197 + AT_rich Low_complexity Low_complexity 1 21 0 2180 122 3 0 chr21 4900048 4900351 -30007219 - AluSx SINE Alu -8 304 1 589 337 16 5 chr21 4900554 4900744 -30006826 - MIR3 SINE MIR -12 196 5 1993 124 37 0 chr21 4901047 4901346 -30006224 - AluSx SINE Alu -2 310 1 330 45 0 0 chr21 4902145 4902189 -30005381 + (CA)n Simple_repeat Simple_repeat 2 45 0 2118 111 3 3 chr21 4902242 4902548 -30005022 + AluSg SINE Alu 1 306 -4 213 65 0 0 chr21 4902626 4902657 -30004913 + (A)n Simple_repeat Simple_repeat 1 31 0 644 237 98 21 chr21 4903146 4903340 -30004230 + MER3 DNA MER1_type 1 209 0 274 283 20 10 chr21 4904697 4904796 -30002774 + CT-rich Low_complexity Low_complexity 1 100 0 31 44 0 0 chr21 4905544 4905589 -30001981 + AT_rich Low_complexity Low_complexity 1 45 0 2484 25 0 0 chr21 4913548 4913830 -29993740 + AluY SINE Alu 28 309 -2 393 267 7 82 chr21 4913927 4914062 -29993508 + MLT1K LTR MaLR 273 397 -191 432 260 60 100 chr21 4914188 4914457 -29993113 - MLT1K LTR MaLR -162 426 169 185 94 31 0 chr21 4915086 4915118 -29992452 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 1868 89 4 0 chr21 4916994 4917242 -29990328 + AluSp SINE Alu 65 313 0 2167 99 13 0 chr21 4917444 4917748 -29989822 - AluY SINE Alu -3 308 1 273 239 97 69 chr21 4918176 4918316 -29989254 - MER5A DNA MER1_type -26 163 7 367 289 64 43 chr21 4918972 4919159 -29988411 - MLT1J LTR MaLR -255 256 66 21 36 0 0 chr21 4919611 4919639 -29987931 + AT_rich Low_complexity Low_complexity 1 28 0 229 359 8 8 chr21 4920011 4920128 -29987442 - L2 LINE L2 -713 2601 2485 2038 101 26 0 chr21 4921213 4921481 -29986089 + AluSx SINE Alu 1 275 -37 237 132 0 0 chr21 4924722 4924760 -29982810 + (TG)n Simple_repeat Simple_repeat 1 38 0 202 259 62 12 chr21 4925010 4925091 -29982479 + L2 LINE L2 3188 3272 0 528 314 66 38 chr21 4925221 4925508 -29982062 + L2 LINE L2 2576 2870 -444 601 250 141 59 chr21 4925559 4925879 -29981691 + L2 LINE L2 2968 3313 0 1119 201 5 19 chr21 4926178 4926392 -29981178 - MER58A DNA MER1_type -13 211 1 305 53 0 0 chr21 4926677 4926715 -29980855 + MER63 DNA MER1_type 1 38 -1023 402 182 0 116 chr21 4928113 4928234 -29979336 - L1MC5 LINE L1 -19 7942 7836 263 188 0 58 chr21 4928239 4928308 -29979262 - L1MC5 LINE L1 -124 7837 7773 661 284 89 16 chr21 4928308 4928565 -29979005 - L1MC5 LINE L1 -428 7533 7258 200 111 28 0 chr21 4928566 4928602 -29978968 + A-rich Low_complexity Low_complexity 3 39 0 1948 143 4 0 chr21 4930082 4930396 -29977174 + AluSx SINE Alu 3 317 0 2692 172 27 19 chr21 4930522 4931085 -29976485 - L1MB1 LINE L1 -1 6167 5601 858 139 14 0 chr21 4931085 4931220 -29976350 - L1PB3 LINE L1 -2 6152 6007 21 0 0 0 chr21 4931222 4931243 -29976327 + AT_rich Low_complexity Low_complexity 1 21 0 2008 106 3 46 chr21 4931246 4931549 -29976021 - AluSq SINE Alu -23 290 1 1753 186 25 0 chr21 4931549 4931910 -29975660 - L1MB1 LINE L1 -727 5607 5238 2862 14 0 0 chr21 4932137 4932483 -29975087 - L1PA3 LINE L1 -831 5315 4970 7097 29 0 0 chr21 4932483 4933311 -29974259 + L1PA3 LINE L1 5319 6152 -3 989 61 0 0 chr21 4934097 4934212 -29973358 - AluY SINE Alu -175 136 22 1282 114 6 0 chr21 4934232 4934408 -29973162 - AluSg/x SINE Alu -10 300 124 2484 69 0 0 chr21 4934408 4934713 -29972857 - AluY SINE Alu -6 305 1 412 295 101 40 chr21 4934713 4935003 -29972567 - L3 LINE CR1 -3 1574 1230 434 324 105 44 chr21 4935219 4935431 -29972139 - MER68 LTR ERV1 -12 550 314 1598 195 89 22 chr21 4935431 4935800 -29971770 - MSTD LTR MaLR -2 394 1 434 324 105 44 chr21 4935800 4935883 -29971687 - MER68 LTR ERV1 -248 314 237 207 265 137 49 chr21 4936571 4936673 -29970897 - L2 LINE L2 0 3272 3162 1140 239 83 57 chr21 4937238 4937695 -29969875 - L2 LINE L2 -4 3309 2841 2197 41 0 11 chr21 4937734 4938001 -29969569 - AluY SINE Alu -15 296 33 447 206 32 13 chr21 4938056 4938223 -29969347 + MER33 DNA MER1_type 1 214 -110 3222 186 63 27 chr21 4938237 4939013 -29968557 - L1MD2 LINE L1 0 6359 5556 284 140 0 18 chr21 4939013 4939070 -29968500 + MER33 DNA MER1_type 234 289 -35 705 287 25 5 chr21 4939264 4939466 -29968104 + MIR SINE MIR 1 206 -56 2533 111 5 19 chr21 4939574 4939943 -29967627 - THE1B LTR MaLR 0 364 1 351 309 16 8 chr21 4939944 4940067 -29967503 + L2 LINE L2 3165 3288 -25 216 0 0 0 chr21 4940075 4940099 -29967471 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 342 67 0 0 chr21 4940689 4940734 -29966836 + (CA)n Simple_repeat Simple_repeat 2 46 0 615 310 65 4 chr21 4941366 4941598 -29965972 - MIR SINE MIR -8 254 9 25 51 0 0 chr21 4942033 4942072 -29965498 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr21 4943085 4943108 -29964462 + AT_rich Low_complexity Low_complexity 1 23 0 768 225 39 0 chr21 4943824 4944006 -29963564 - MER5A DNA MER1_type 0 189 1 855 164 0 0 chr21 4944119 4944247 -29963323 - FLAM_C SINE Alu -4 129 2 2186 120 0 0 chr21 4944346 4944647 -29962923 + AluSg SINE Alu 1 301 -9 2423 80 0 0 chr21 4945117 4945418 -29962152 - AluSg SINE Alu -9 301 1 587 275 6 34 chr21 4945520 4945698 -29961872 - MER5B DNA MER1_type -5 173 1 2082 117 17 0 chr21 4945784 4946083 -29961487 + AluSp SINE Alu 1 304 -9 204 258 15 30 chr21 4946307 4946373 -29961197 - L2 LINE L2 -16 3256 3192 21 0 0 0 chr21 4946700 4946721 -29960849 + AT_rich Low_complexity Low_complexity 1 21 0 2750 70 120 0 chr21 4948884 4949284 -29958286 + LTR7 LTR ERV1 1 448 -2 278 333 30 10 chr21 4950112 4950211 -29957359 - L2 LINE L2 -10 3303 3203 208 289 62 70 chr21 4950509 4950637 -29956933 - L2 LINE L2 -421 2893 2767 22 0 0 0 chr21 4952047 4952069 -29955501 + AT_rich Low_complexity Low_complexity 1 22 0 1377 227 64 6 chr21 4952877 4953221 -29954349 + MLT1A1 LTR MaLR 1 364 -1 535 292 26 31 chr21 4953530 4953722 -29953848 + MLT1K LTR MaLR 69 259 -329 184 232 116 14 chr21 4953921 4953990 -29953580 + L2 LINE L2 2714 2789 -525 892 195 53 0 chr21 4954365 4954534 -29953036 + MER5A DNA MER1_type 1 178 -11 442 279 85 8 chr21 4955102 4955231 -29952339 + MIR SINE MIR 12 150 -112 255 348 80 9 chr21 4956018 4956130 -29951440 - L2 LINE L2 -21 3292 3173 2412 66 3 0 chr21 4956263 4956565 -29951005 + AluY SINE Alu 1 303 -8 1758 199 18 22 chr21 4956723 4957184 -29950386 + LTR2B LTR ERV1 1 490 0 24 0 0 0 chr21 4957994 4958018 -29949552 + AT_rich Low_complexity Low_complexity 1 24 0 238 377 60 36 chr21 4958103 4958355 -29949215 + L2 LINE L2 3015 3272 0 267 31 0 0 chr21 4958615 4958647 -29948923 + (TG)n Simple_repeat Simple_repeat 2 33 0 2262 106 0 0 chr21 4958755 4959056 -29948514 - AluSx SINE Alu -11 301 1 2261 118 0 29 chr21 4959253 4959600 -29947970 - MER1B DNA MER1_type 0 337 1 21 36 0 0 chr21 4960150 4960178 -29947392 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr21 4960339 4960381 -29947189 + AT_rich Low_complexity Low_complexity 1 42 0 251 259 0 0 chr21 4960914 4960972 -29946598 + (TG)n Simple_repeat Simple_repeat 2 59 0 1121 256 6 31 chr21 4961264 4961588 -29945982 - L1ME2 LINE L1 -9 6224 5909 255 255 0 20 chr21 4961589 4961640 -29945930 + MLT1E1 LTR MaLR 1 50 -543 1662 256 51 35 chr21 4961688 4962180 -29945390 + MLT1E1 LTR MaLR 148 647 -7 1212 282 40 39 chr21 4962223 4962763 -29944807 - MLT1E LTR MaLR 0 593 1 2253 245 65 37 chr21 4962764 4963476 -29944094 - L1ME2 LINE L1 -356 5877 5090 21 0 0 0 chr21 4963476 4963497 -29944073 + AT_rich Low_complexity Low_complexity 1 21 0 2253 245 65 37 chr21 4963497 4964095 -29943475 - L1ME2 LINE L1 -1143 5090 4510 2712 244 78 27 chr21 4964147 4965176 -29942394 - L1ME2 LINE L1 -1788 4427 3347 1373 286 62 55 chr21 4965204 4966229 -29941341 - L1ME2 LINE L1 -5007 1389 357 894 184 8 115 chr21 4969180 4969424 -29938146 + MER20 DNA MER1_type 1 218 -1 261 146 90 0 chr21 4970339 4970406 -29937164 - L1MD3 LINE L1 -4 7990 7708 1130 197 20 7 chr21 4970407 4970813 -29936757 - L1MC3 LINE L1 -115 7670 7235 27 29 0 0 chr21 4970838 4970872 -29936698 + AT_rich Low_complexity Low_complexity 1 34 0 2439 72 3 0 chr21 4971464 4971771 -29935799 + AluSc SINE Alu 2 309 0 22 0 0 0 chr21 4971970 4971992 -29935578 + AT_rich Low_complexity Low_complexity 1 22 0 328 319 109 77 chr21 4972648 4972911 -29934659 + L1ME3 LINE L1 441 725 -5394 5331 73 1 6 chr21 4972911 4973620 -29933950 + L1PA8 LINE L1 5467 6172 0 328 319 109 77 chr21 4973620 4973786 -29933784 + L1ME3 LINE L1 725 884 -5235 4317 93 37 2 chr21 4975500 4976124 -29931446 + L1PA13 LINE L1 5509 6154 -9 423 0 0 0 chr21 4976124 4976171 -29931399 + (CA)n Simple_repeat Simple_repeat 2 48 0 628 270 22 39 chr21 4976280 4976510 -29931060 - L2 LINE L2 -1 3312 3087 201 224 0 75 chr21 4976662 4976729 -29930841 - MIR SINE MIR -12 250 189 953 250 67 58 chr21 4976780 4977316 -29930254 + L1ME3 LINE L1 4364 4904 -1225 1695 291 29 13 chr21 4977785 4978152 -29929418 + L1ME3 LINE L1 5472 5855 -290 1924 106 7 3 chr21 4978152 4978472 -29929098 + AluSg SINE Alu 1 321 0 1695 291 29 13 chr21 4978472 4978715 -29928855 + L1ME3 LINE L1 5855 6093 -52 819 253 60 29 chr21 4978790 4978948 -29928622 + L1MC5 LINE L1 7533 7685 -276 2327 63 0 66 chr21 4978948 4979298 -29928272 - L1PA7 LINE L1 -7 6147 5821 819 253 60 29 chr21 4979298 4979522 -29928048 + L1MC5 LINE L1 7685 7927 -34 1670 135 15 0 chr21 4979541 4979801 -29927769 + L1PA16 LINE L1 5894 6157 -9 231 295 32 21 chr21 4980077 4980172 -29927398 + L1ME LINE L1 1236 1331 -5095 302 248 92 0 chr21 4980407 4980516 -29927054 + L1ME LINE L1 1642 1760 -4668 843 288 95 26 chr21 4980809 4981348 -29926222 + L1ME LINE L1 2304 2839 -3587 652 336 55 38 chr21 4981436 4981853 -29925717 + L1ME LINE L1 3005 3428 -2998 859 239 35 44 chr21 4982020 4982338 -29925232 + L1ME LINE L1 3386 3700 -2726 7266 50 3 0 chr21 4982383 4983280 -29924290 - L1PA6 LINE L1 -1 6153 5254 304 280 0 0 chr21 4983295 4983388 -29924182 + L1ME LINE L1 3762 3854 -2572 486 256 30 0 chr21 4983377 4983510 -29924060 + L1ME LINE L1 5741 5877 -565 21 0 0 0 chr21 4984071 4984092 -29923478 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 4984756 4984784 -29922786 + AT_rich Low_complexity Low_complexity 1 28 0 2427 59 0 0 chr21 4985662 4985967 -29921603 + AluY SINE Alu 1 305 -6 526 246 8 45 chr21 4986154 4986288 -29921282 - L2 LINE L2 -8 3305 3177 211 282 122 23 chr21 4986348 4986479 -29921091 - L2 LINE L2 -462 2852 2709 24 0 0 0 chr21 4986860 4986884 -29920686 + AT_rich Low_complexity Low_complexity 1 24 0 2098 217 67 23 chr21 4986980 4987972 -29919598 + L1MD3 LINE L1 6583 7844 -151 466 202 0 30 chr21 4987974 4988073 -29919497 + L1MD3 LINE L1 7899 7994 -1 373 224 0 0 chr21 4990684 4990751 -29916819 + MER69 DNA AcHobo 5 71 -2455 437 271 7 14 chr21 4990754 4990898 -29916672 + MER69 DNA AcHobo 2384 2526 0 225 0 0 0 chr21 4990935 4990960 -29916610 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 302 43 22 chr21 4991185 4991324 -29916246 + L1 LINE L1 2266 2407 -3739 1990 174 14 11 chr21 4991324 4991675 -29915895 - MLT1A1 LTR MaLR 0 365 14 578 311 87 28 chr21 4992125 4992447 -29915123 + L1MEd LINE L1 288 628 -5491 554 222 21 109 chr21 4994672 4994911 -29912659 - MER20 DNA MER1_type 0 219 2 510 295 16 0 chr21 4994990 4995119 -29912451 - MIR SINE MIR -110 152 22 23 33 0 0 chr21 4997497 4997527 -29910043 + AT_rich Low_complexity Low_complexity 1 30 0 27 73 0 0 chr21 4997566 4997621 -29909949 + AT_rich Low_complexity Low_complexity 1 55 0 1813 240 84 22 chr21 4998278 4998438 -29909132 - MLT1E3 LTR MaLR 0 624 475 2523 111 8 3 chr21 4998438 4998800 -29908770 + THE1B LTR MaLR 1 364 0 1813 240 84 22 chr21 4998800 4999212 -29908358 - MLT1E3 LTR MaLR -149 475 57 1606 135 60 83 chr21 5000009 5000393 -29907177 - THE1C LTR MaLR 0 375 1 225 0 0 0 chr21 5000497 5000522 -29907048 + (TA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr21 5000737 5000766 -29906804 + AT_rich Low_complexity Low_complexity 1 29 0 261 57 0 0 chr21 5001065 5001100 -29906470 + (TC)n Simple_repeat Simple_repeat 1 35 0 433 253 39 66 chr21 5002003 5002185 -29905385 + MER5B DNA MER1_type 1 177 -1 481 304 58 23 chr21 5002193 5002364 -29905206 + MER5B DNA MER1_type 2 178 0 21 57 0 0 chr21 5004464 5004499 -29903071 + AT_rich Low_complexity Low_complexity 1 35 0 1667 181 4 0 chr21 5005194 5005498 -29902072 + AluSx SINE Alu 1 305 0 2443 59 0 0 chr21 5005586 5005891 -29901679 - AluY SINE Alu 0 311 7 1557 178 105 11 chr21 5005930 5006312 -29901258 + L1MC3 LINE L1 7368 7785 0 925 210 26 0 chr21 5006608 5006803 -29900767 + MER3 DNA MER1_type 1 200 -9 2498 46 3 3 chr21 5007320 5007624 -29899946 + AluY SINE Alu 1 304 -7 2030 306 94 50 chr21 5007882 5009019 -29898551 + L2 LINE L2 88 1274 -2040 316 315 39 0 chr21 5009246 5009373 -29898197 + L2 LINE L2 1534 1665 -1649 422 257 40 20 chr21 5009409 5009557 -29898013 + L2 LINE L2 2983 3133 -180 1605 149 68 49 chr21 5011822 5012190 -29895380 - THE1C LTR MaLR 0 375 1 9255 142 15 38 chr21 5012190 5013804 -29893766 - THE1C-int LTR MaLR 0 1580 4 1649 169 60 35 chr21 5013807 5014173 -29893397 - THE1C LTR MaLR 0 375 1 2096 123 0 0 chr21 5014802 5015114 -29892456 + AluSx SINE Alu 1 312 0 2047 243 39 29 chr21 5017033 5018035 -29889535 - L1ME3 LINE L1 -212 6186 5115 451 270 105 26 chr21 5018065 5018217 -29889353 - L1ME3 LINE L1 -1329 5053 4890 983 282 41 0 chr21 5018220 5018585 -29888985 - L1ME3 LINE L1 -1497 4885 4506 389 300 159 36 chr21 5018587 5018807 -29888763 - L1ME3 LINE L1 -4843 1541 1295 922 302 79 59 chr21 5018880 5019365 -29888205 - L1ME3 LINE L1 -5215 1348 874 2424 74 0 3 chr21 5019365 5019677 -29887893 - AluY SINE Alu 0 311 1 922 302 79 59 chr21 5019677 5020245 -29887325 - L1ME3 LINE L1 -5689 874 274 1278 251 16 9 chr21 5020842 5021225 -29886345 + L1ME LINE L1 5440 5774 -392 4343 43 2 2 chr21 5021229 5021764 -29885806 - L1PA5 LINE L1 -4 6150 5616 24 32 0 0 chr21 5022361 5022392 -29885178 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr21 5023297 5023330 -29884240 + AT_rich Low_complexity Low_complexity 1 33 0 2209 105 0 10 chr21 5024340 5024634 -29882936 - AluSx SINE Alu -21 291 1 222 349 31 39 chr21 5024732 5024861 -29882709 - MIR SINE MIR -118 144 17 1770 122 4 19 chr21 5026895 5027158 -29880412 - THE1B LTR MaLR -105 259 1 1961 106 4 8 chr21 5027328 5027592 -29879978 + AluSq SINE Alu 36 298 -15 516 105 12 0 chr21 5027612 5027698 -29879872 + L1PA13 LINE L1 6076 6162 -1 23 0 0 0 chr21 5027718 5027741 -29879829 + AT_rich Low_complexity Low_complexity 1 23 0 1760 197 27 49 chr21 5028993 5029182 -29878388 - Charlie4a DNA MER1_type -1457 504 312 1695 185 23 3 chr21 5029182 5029484 -29878086 - AluJb SINE Alu -4 308 1 1760 197 27 49 chr21 5029484 5029807 -29877763 - Charlie4a DNA MER1_type -1649 312 3 2761 87 42 10 chr21 5030052 5030456 -29877114 - L1PA8 LINE L1 0 6172 5756 1905 73 4 0 chr21 5030457 5030704 -29876866 + L1PA8 LINE L1 5520 5767 -405 21 36 0 0 chr21 5032045 5032073 -29875497 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr21 5032080 5032101 -29875469 + (TA)n Simple_repeat Simple_repeat 2 22 0 345 239 0 0 chr21 5032186 5032257 -29875313 - MLT1L LTR MaLR -381 234 164 466 283 17 0 chr21 5032704 5032824 -29874746 + L2 LINE L2 3192 3313 0 4513 195 26 1 chr21 5034351 5035325 -29872245 - L1 LINE L1 -1344 4802 3805 4940 129 20 12 chr21 5035297 5036106 -29871464 + L1PA16 LINE L1 5336 6150 -16 41 48 0 0 chr21 5036107 5036169 -29871401 + AT_rich Low_complexity Low_complexity 1 62 0 996 151 6 6 chr21 5036831 5036990 -29870580 + U1 snRNA snRNA 7 165 0 346 212 97 109 chr21 5037108 5037273 -29870297 + L1ME4a LINE L1 5725 5887 -234 280 267 48 32 chr21 5037277 5037464 -29870106 + L1ME4a LINE L1 5928 6117 -4 6160 57 5 1 chr21 5038319 5039104 -29868466 + L1PA7 LINE L1 5367 6154 0 615 321 5 16 chr21 5039605 5039798 -29867772 + MIR SINE MIR 12 202 -60 211 304 29 80 chr21 5041964 5042102 -29865468 + L2 LINE L2 2302 2432 -882 324 183 0 17 chr21 5043923 5043983 -29863587 + Zaphod DNA AcHobo 179 237 -3786 702 235 53 51 chr21 5044018 5044599 -29862971 + Zaphod DNA AcHobo 295 988 -3035 613 247 69 9 chr21 5044605 5044836 -29862734 + Zaphod DNA AcHobo 3593 3837 -186 2824 13 0 0 chr21 5045998 5046309 -29861261 + AluYa5 SINE Alu 1 311 0 26 0 0 0 chr21 5046658 5046684 -29860886 + AT_rich Low_complexity Low_complexity 1 26 0 2383 65 3 10 chr21 5047880 5048189 -29859381 - AluY SINE Alu -4 307 1 306 0 0 0 chr21 5048196 5048230 -29859340 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5624 32 0 0 chr21 5048230 5048892 -29858678 - L1PA4 LINE L1 -18 6137 5476 9442 26 3 1 chr21 5048903 5050798 -29856772 - L1PA4 LINE L1 0 6155 4259 1857 19 0 0 chr21 5050798 5051010 -29856560 + L1PA4 LINE L1 5940 6154 -1 21222 99 19 4 chr21 5051027 5054953 -29852617 + L1PA7 LINE L1 2175 6154 0 251 71 24 0 chr21 5055508 5055550 -29852020 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1602 197 44 19 chr21 5057316 5057681 -29849889 + MLT1A2 LTR MaLR 1 374 0 607 230 99 6 chr21 5058287 5058448 -29849122 - MER45A DNA AcHobo -1 177 2 440 275 161 0 chr21 5060683 5060832 -29846738 - MIR SINE MIR 0 262 90 254 73 24 0 chr21 5061132 5061173 -29846397 + (TC)n Simple_repeat Simple_repeat 1 42 0 555 248 20 0 chr21 5062315 5062468 -29845102 + L1MA10 LINE L1 6176 6331 -3 201 94 0 0 chr21 5063745 5063777 -29843793 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 874 159 0 21 chr21 5065131 5065414 -29842156 + (TA)n Simple_repeat Simple_repeat 1 277 0 361 278 0 0 chr21 5065424 5065514 -29842056 + L1MC4 LINE L1 6614 6703 -1339 386 250 0 0 chr21 5065446 5065534 -29842036 - L1MC4 LINE L1 -1339 6703 6616 1832 183 41 68 chr21 5065754 5066192 -29841378 + MSTB LTR MaLR 1 426 0 2073 70 7 0 chr21 5066798 5067069 -29840501 - AluY SINE Alu 0 311 39 27 49 0 0 chr21 5067652 5067693 -29839877 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr21 5069387 5069407 -29838163 + (T)n Simple_repeat Simple_repeat 1 20 0 1750 288 47 4 chr21 5071249 5071777 -29835793 - MLT1H1 LTR MaLR -2 553 3 627 227 82 41 chr21 5071897 5072240 -29835330 + L1MC5 LINE L1 7524 7880 -81 356 299 7 82 chr21 5072546 5072693 -29834877 - L2 LINE L2 0 3272 3137 495 48 0 0 chr21 5073071 5073133 -29834437 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 589 263 66 70 chr21 5073315 5073356 -29834214 - MIR SINE MIR -32 230 190 2044 115 7 0 chr21 5073356 5073635 -29833935 + AluSq SINE Alu 1 281 -32 212 0 0 35 chr21 5073636 5073665 -29833905 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 589 263 66 70 chr21 5073665 5073849 -29833721 - MIR SINE MIR -71 191 4 235 271 57 0 chr21 5073899 5073969 -29833601 + MLT1I LTR MaLR 80 153 -256 21542 32 0 0 chr21 5074705 5078083 -29829487 + L1PA4 LINE L1 2769 6153 -2 1480 244 70 70 chr21 5078163 5078705 -29828865 - MLT1F1 LTR MaLR 0 567 1 9396 155 22 17 chr21 5078725 5078746 -29828824 + L1MA3 LINE L1 3431 3450 -2855 1615 204 0 32 chr21 5078746 5079060 -29828510 + AluJb SINE Alu 3 306 -6 9396 155 22 17 chr21 5079060 5081906 -29825664 + L1MA3 LINE L1 3450 6305 0 180 0 0 0 chr21 5082219 5082239 -29825331 + (TG)n Simple_repeat Simple_repeat 2 21 0 257 75 25 0 chr21 5082238 5082278 -29825292 + (TA)n Simple_repeat Simple_repeat 2 42 0 2057 107 0 0 chr21 5082354 5082670 -29824900 - AluY SINE Alu 0 316 1 257 274 0 105 chr21 5083730 5083825 -29823745 - L2 LINE L2 0 3272 3188 1454 175 24 3 chr21 5085039 5085330 -29822240 + L1MB3 LINE L1 5887 6183 0 542 285 26 55 chr21 5085452 5085761 -29821809 + HAL1b LINE L1 368 667 -681 332 329 84 12 chr21 5085783 5085950 -29821620 + HAL1b LINE L1 733 911 -437 604 287 24 6 chr21 5086543 5086707 -29820863 + MIR3 SINE MIR 41 207 -1 1762 135 7 31 chr21 5086964 5087290 -29820280 - AluSx SINE Alu 0 319 1 23 54 0 0 chr21 5089212 5089249 -29818321 + AT_rich Low_complexity Low_complexity 1 37 0 943 109 0 0 chr21 5089814 5089942 -29817628 + AluYb8 SINE Alu 5 132 -186 180 0 0 0 chr21 5089942 5089962 -29817608 + (A)n Simple_repeat Simple_repeat 1 20 0 236 189 0 0 chr21 5090033 5090086 -29817484 + A-rich Low_complexity Low_complexity 1 53 0 328 336 0 33 chr21 5090945 5091067 -29816503 + L2 LINE L2 3180 3297 -16 477 333 71 18 chr21 5093806 5094031 -29813539 - MIR SINE MIR -12 250 14 773 234 99 20 chr21 5096907 5097211 -29810359 + L1MC4 LINE L1 6832 7159 -883 664 213 13 0 chr21 5097219 5097369 -29810201 + L1MC4a LINE L1 7124 7275 -533 2473 181 53 10 chr21 5097380 5097887 -29809683 + MER34 LTR ERV1 11 539 -3 348 240 32 56 chr21 5097889 5098014 -29809556 + L1MC4a LINE L1 7272 7393 -415 1883 166 0 16 chr21 5098285 5098599 -29808971 + AluJo SINE Alu 1 309 -3 1220 128 0 0 chr21 5099363 5099535 -29808035 + L1PA7 LINE L1 1 172 -6289 4785 171 18 35 chr21 5099534 5100505 -29807065 + L1PA7 LINE L1 1104 2059 -4397 16642 102 11 0 chr21 5100505 5103788 -29803782 + L1PA7 LINE L1 3187 6465 -4 25 65 0 0 chr21 5103901 5103947 -29803623 + AT_rich Low_complexity Low_complexity 1 46 0 318 132 0 0 chr21 5104561 5104614 -29802956 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 305 126 29 chr21 5104779 5104953 -29802617 - L2 LINE L2 -908 2406 2216 424 293 95 48 chr21 5107190 5107675 -29799895 - L1ME3 LINE L1 -337 5825 5314 1580 209 3 3 chr21 5107675 5107972 -29799598 - AluJo SINE Alu -15 297 1 424 293 95 48 chr21 5107972 5108023 -29799547 - L1ME3 LINE L1 -848 5314 5267 1263 287 40 42 chr21 5108068 5108558 -29799012 - L1ME3 LINE L1 -998 5148 4657 1959 110 4 0 chr21 5108558 5108854 -29798716 - AluSq SINE Alu 0 317 21 1263 287 40 42 chr21 5108854 5108885 -29798685 - L1ME3 LINE L1 -1489 4657 4627 532 260 68 23 chr21 5108935 5109200 -29798370 - L1ME3 LINE L1 -1545 4601 4325 21 71 0 0 chr21 5109775 5109817 -29797753 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr21 5110316 5110344 -29797226 + AT_rich Low_complexity Low_complexity 1 28 0 256 163 23 0 chr21 5112856 5112899 -29794671 - L3 LINE CR1 -944 633 590 297 260 26 0 chr21 5112919 5112996 -29794574 - L2 LINE L2 -2 3311 3233 516 333 66 29 chr21 5113265 5113613 -29793957 + L1MC/D LINE L1 5462 5822 -1986 521 263 41 29 chr21 5114775 5114946 -29792624 - MER69A DNA AcHobo -1 176 4 222 37 0 0 chr21 5116247 5116274 -29791296 + (A)n Simple_repeat Simple_repeat 1 27 0 624 306 51 5 chr21 5116864 5117060 -29790510 - MIR SINE MIR 0 262 58 677 299 47 49 chr21 5117818 5118223 -29789347 - MLT1I LTR MaLR 0 409 6 241 111 0 0 chr21 5120894 5120930 -29786640 + L2 LINE L2 3271 3306 -7 534 349 59 22 chr21 5121119 5121443 -29786127 - L3 LINE CR1 -193 1384 1049 272 296 74 28 chr21 5121451 5121559 -29786011 - L2 LINE L2 -1 3312 3200 24 0 0 0 chr21 5121721 5121745 -29785825 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr21 5121967 5122011 -29785559 + AT_rich Low_complexity Low_complexity 1 44 0 486 286 149 32 chr21 5122978 5123321 -29784249 + L1ME2 LINE L1 860 1242 -5154 1160 270 78 66 chr21 5123322 5124227 -29783343 + L1ME2 LINE L1 1343 2258 -4138 458 355 5 9 chr21 5124293 5124510 -29783060 + ERVL LTR ERVL 4258 4473 -1291 1031 283 49 17 chr21 5125953 5126360 -29781210 + L1ME2 LINE L1 4524 4943 -1272 22 35 0 0 chr21 5126360 5126389 -29781181 + AT_rich Low_complexity Low_complexity 1 29 0 948 240 32 58 chr21 5126414 5127021 -29780549 + L1ME2 LINE L1 4917 5512 -719 2106 183 0 3 chr21 5127053 5127419 -29780151 + MLT1A1 LTR MaLR 1 365 0 906 253 56 9 chr21 5127458 5127921 -29779649 + L1ME2 LINE L1 5647 6182 -51 208 261 0 22 chr21 5128555 5128601 -29778969 + MER5A DNA MER1_type 40 84 -105 22 56 0 0 chr21 5130829 5130865 -29776705 + AT_rich Low_complexity Low_complexity 1 36 0 324 352 116 46 chr21 5131147 5131519 -29776051 + L1M4 LINE L1 3951 4348 -1798 392 267 48 77 chr21 5131541 5131878 -29775692 + L1MEc LINE L1 3099 3425 -2790 558 311 90 56 chr21 5131985 5132627 -29774943 + L1M4 LINE L1 4570 5233 -913 246 280 122 65 chr21 5133149 5133363 -29774207 + L2 LINE L2 2564 2789 -525 250 333 0 0 chr21 5133699 5133774 -29773796 + L2 LINE L2 3237 3311 -2 198 0 0 0 chr21 5133867 5133889 -29773681 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 425 274 55 65 chr21 5134462 5134663 -29772907 - LTR67 LTR ERVL -2 555 357 716 253 12 24 chr21 5135232 5135402 -29772168 - MER20 DNA MER1_type -11 208 41 1908 139 10 7 chr21 5135567 5135877 -29771693 - AluSq SINE Alu -2 311 1 2441 47 3 3 chr21 5135901 5136199 -29771371 - AluY SINE Alu -13 298 1 34 42 0 0 chr21 5136220 5136268 -29771302 + AT_rich Low_complexity Low_complexity 1 48 0 1567 179 13 23 chr21 5136690 5136998 -29770572 + AluJb SINE Alu 1 305 -7 252 149 0 0 chr21 5137342 5137389 -29770181 + (TC)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr21 5137937 5137960 -29769610 + AT_rich Low_complexity Low_complexity 1 23 0 311 280 0 17 chr21 5139044 5139162 -29768408 + (TA)n Simple_repeat Simple_repeat 1 116 0 576 274 49 36 chr21 5139232 5139455 -29768115 + MIR SINE MIR 37 262 0 1577 209 0 7 chr21 5139916 5140223 -29767347 - AluJb SINE Alu -7 305 1 1096 331 36 29 chr21 5140236 5140852 -29766718 + HERV16 LTR ERVL 37 656 -4340 1753 171 10 7 chr21 5141034 5141493 -29766077 - AluJb SINE Alu 0 460 1 1625 291 34 30 chr21 5142316 5143462 -29764108 + HERV16 LTR ERVL 1818 3027 -1969 194 165 10 31 chr21 5143618 5143715 -29763855 + (TA)n Simple_repeat Simple_repeat 2 96 0 2495 149 13 10 chr21 5143718 5143734 -29763836 - MSTA LTR MaLR -26 387 373 2041 135 7 0 chr21 5143734 5144031 -29763539 + AluSx SINE Alu 1 299 -13 2495 149 13 10 chr21 5144031 5144416 -29763154 - MSTA LTR MaLR -40 373 1 1594 186 96 6 chr21 5144580 5144914 -29762656 + MLT1A1 LTR MaLR 2 365 0 2214 65 3 58 chr21 5147005 5147313 -29760257 - AluY SINE Alu -8 303 13 279 339 63 26 chr21 5149892 5150081 -29757489 - L2 LINE L2 -5 3308 3113 204 239 15 0 chr21 5150458 5150525 -29757045 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr21 5150900 5150920 -29756650 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr21 5151329 5151360 -29756210 + AT_rich Low_complexity Low_complexity 1 31 0 1684 282 44 45 chr21 5152331 5153130 -29754440 + L1ME LINE L1 191 988 -5082 1442 231 50 2 chr21 5153136 5153633 -29753937 + L1MC4 LINE L1 7281 7846 -149 1375 268 48 23 chr21 5153616 5154221 -29753349 + L1M4 LINE L1 4542 5161 -985 213 356 0 0 chr21 5157029 5157102 -29750468 + L2 LINE L2 3226 3298 -15 225 325 77 8 chr21 5157936 5158053 -29749517 + MIR SINE MIR 5 129 -133 191 196 98 0 chr21 5161424 5161475 -29746095 - MIR SINE MIR -75 187 132 23 33 0 0 chr21 5162371 5162401 -29745169 + AT_rich Low_complexity Low_complexity 1 30 0 216 291 12 58 chr21 5163139 5163225 -29744345 - MIR SINE MIR -18 244 163 324 0 0 0 chr21 5163658 5163694 -29743876 + (A)n Simple_repeat Simple_repeat 1 36 0 434 214 0 0 chr21 5163782 5163866 -29743704 - AluJb SINE Alu -187 125 42 1151 258 71 32 chr21 5164052 5164432 -29743138 - MSTD LTR MaLR -1 395 1 232 259 0 0 chr21 5164464 5164518 -29743052 + (CATA)n Simple_repeat Simple_repeat 3 56 0 781 330 39 17 chr21 5165294 5165652 -29741918 + LTR33 LTR ERVL 155 520 -1 24 0 0 0 chr21 5165737 5165761 -29741809 + AT_rich Low_complexity Low_complexity 1 24 0 358 273 47 0 chr21 5165776 5165904 -29741666 + MER110 LTR ERV1 310 443 -48 22 0 0 0 chr21 5165970 5165992 -29741578 + AT_rich Low_complexity Low_complexity 1 22 0 268 242 23 31 chr21 5168267 5168395 -29739175 + (CATATA)n Simple_repeat Simple_repeat 3 129 0 259 136 0 23 chr21 5168708 5168752 -29738818 - tRNA-Cys-TGC tRNA tRNA -30 45 3 32 26 0 0 chr21 5169212 5169251 -29738319 + AT_rich Low_complexity Low_complexity 1 39 0 290 101 38 51 chr21 5170969 5171048 -29736522 + GA-rich Low_complexity Low_complexity 4 81 0 21 36 0 0 chr21 5172308 5172336 -29735234 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr21 5172450 5172489 -29735081 + AT_rich Low_complexity Low_complexity 1 39 0 329 115 0 0 chr21 5172510 5172562 -29735008 - AluSc SINE Alu 0 299 248 3030 221 61 56 chr21 5172657 5174024 -29733546 - L1M4c LINE L1 -4352 2211 800 265 255 0 0 chr21 5174115 5174162 -29733408 - L1M3de LINE L1 -5258 1395 1349 24 91 0 0 chr21 5175782 5175848 -29731722 + AT_rich Low_complexity Low_complexity 1 66 0 2362 72 0 7 chr21 5176943 5177247 -29730323 + AluY SINE Alu 1 302 -9 1632 179 4 7 chr21 5177573 5177852 -29729718 + AluJb SINE Alu 1 278 -34 3241 123 16 15 chr21 5177854 5178568 -29729002 - L1P5 LINE L1 -412 5739 5030 189 107 0 0 chr21 5178704 5178732 -29728838 + (T)n Simple_repeat Simple_repeat 1 28 0 487 271 25 0 chr21 5180491 5180613 -29726957 - L1ME LINE L1 -472 5649 5525 21 0 0 0 chr21 5183200 5183221 -29724349 + AT_rich Low_complexity Low_complexity 1 21 0 322 311 47 9 chr21 5184553 5184659 -29722911 - MIR SINE MIR -66 142 33 2125 140 7 0 chr21 5185585 5185892 -29721678 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr21 5185995 5186026 -29721544 + AT_rich Low_complexity Low_complexity 1 31 0 776 192 26 0 chr21 5186535 5186691 -29720879 + L1MA7 LINE L1 5893 6052 -239 501 174 25 25 chr21 5186692 5186813 -29720757 + L1MA7 LINE L1 6160 6280 -11 353 353 7 7 chr21 5187128 5187281 -29720289 + MIR SINE MIR 110 262 0 789 257 5 28 chr21 5187723 5187937 -29719633 - LTR16A1 LTR ERVL 0 457 249 35 63 0 0 chr21 5189042 5189105 -29718465 + AT_rich Low_complexity Low_complexity 1 63 0 221 163 20 0 chr21 5189164 5189213 -29718357 + CT-rich Low_complexity Low_complexity 3 52 0 23 0 0 0 chr21 5190561 5190584 -29716986 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr21 5192279 5192321 -29715249 + AT_rich Low_complexity Low_complexity 1 42 0 2946 181 6 0 chr21 5192628 5193110 -29714460 + L1MA4 LINE L1 1 485 -4843 315 187 0 27 chr21 5193115 5193190 -29714380 + L1P LINE L1 3775 3847 -2299 7330 174 27 16 chr21 5193180 5195548 -29712022 + L1MA4 LINE L1 4051 6452 -30 22 0 0 0 chr21 5195558 5195580 -29711990 + AT_rich Low_complexity Low_complexity 1 22 0 941 305 58 22 chr21 5195580 5195941 -29711629 + L2 LINE L2 2131 2504 -810 2317 97 3 0 chr21 5196841 5197150 -29710420 + AluY SINE Alu 1 310 -1 25542 149 17 16 chr21 5197226 5202785 -29704785 + L1PA10 LINE L1 859 6483 0 1606 0 0 0 chr21 5202899 5203079 -29704491 + L1PA3 LINE L1 5792 5971 -184 696 253 55 93 chr21 5203265 5203629 -29703941 - MLT1H LTR MaLR -188 361 12 748 277 71 19 chr21 5205134 5205401 -29702169 - MLT1H LTR MaLR -261 288 8 1543 204 3 0 chr21 5207315 5207599 -29699971 - AluJo SINE Alu -12 300 16 582 154 46 120 chr21 5209202 5209377 -29698193 + MLT1D LTR MaLR 5 166 -460 1299 209 4 8 chr21 5209419 5209678 -29697892 + MLT1D LTR MaLR 248 505 0 2561 82 119 5 chr21 5210046 5210448 -29697122 + LTR7 LTR ERV1 1 448 -2 27696 84 19 13 chr21 5210450 5214417 -29693153 + HERVH LTR ERV1 1 3993 -3720 4164 155 1 3 chr21 5214419 5215082 -29692488 + HERVH LTR ERV1 4488 5149 -2564 1370 128 23 5 chr21 5215079 5215298 -29692272 + HERVH LTR ERV1 5597 5819 -1894 2254 107 53 13 chr21 5215298 5215673 -29691897 + HERVH LTR ERV1 7324 7713 0 2490 87 119 10 chr21 5215673 5216077 -29691493 + LTR7 LTR ERV1 1 448 -2 240 356 115 11 chr21 5216088 5216262 -29691308 + L2 LINE L2 3117 3308 -5 1714 142 31 3 chr21 5216312 5216600 -29690970 - THE1C LTR MaLR 0 375 80 963 183 48 11 chr21 5216598 5216784 -29690786 - THE1C LTR MaLR -182 193 1 441 264 101 68 chr21 5216929 5217346 -29690224 - MLT1H LTR MaLR 0 595 118 803 230 67 80 chr21 5217362 5217747 -29689823 + MLT2B1 LTR ERVL 22 415 -100 227 167 56 19 chr21 5217783 5217837 -29689733 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 24 67 0 0 chr21 5218066 5218111 -29689459 + AT_rich Low_complexity Low_complexity 1 45 0 36 40 0 0 chr21 5218327 5218377 -29689193 + AT_rich Low_complexity Low_complexity 1 50 0 238 218 0 51 chr21 5219539 5219617 -29687953 + T-rich Low_complexity Low_complexity 2 75 0 2118 124 3 3 chr21 5219645 5219943 -29687627 + AluSq SINE Alu 1 298 -15 445 272 22 15 chr21 5220771 5220907 -29686663 - MLT2E LTR ERVL -490 138 2 823 250 43 47 chr21 5221370 5221626 -29685944 + LTR40b LTR ERVL 193 447 -15 988 115 6 0 chr21 5221932 5222088 -29685482 - L1MA4A LINE L1 -11 6292 6136 11718 183 33 27 chr21 5222094 5224957 -29682613 + L1MA4A LINE L1 2630 5502 -801 1479 112 105 112 chr21 5224957 5225271 -29682299 + AluSx SINE Alu 1 312 0 11718 183 33 27 chr21 5225271 5225905 -29681665 + L1MA4A LINE L1 5502 6131 -172 1073 261 68 12 chr21 5225905 5226230 -29681340 - ERVL LTR ERVL -526 5238 4896 824 313 13 0 chr21 5226558 5226788 -29680782 - ERVL LTR ERVL -1352 4412 4180 308 348 43 0 chr21 5226976 5227091 -29680479 - ERVL LTR ERVL -1904 3860 3741 482 290 47 24 chr21 5227143 5227312 -29680258 + MIR SINE MIR 89 261 -1 239 273 80 23 chr21 5229514 5229602 -29677968 - MIR3 SINE MIR -8 200 108 2220 115 0 0 chr21 5231548 5231860 -29675710 - AluSx SINE Alu 0 312 1 2495 80 122 5 chr21 5231967 5232368 -29675202 + LTR7 LTR ERV1 1 448 -2 15798 100 16 19 chr21 5232370 5235249 -29672321 + HERVH LTR ERV1 1 2995 -4718 6225 76 6 2 chr21 5235228 5236079 -29671491 + HERVH LTR ERV1 3140 3993 -3720 4325 142 0 3 chr21 5236081 5236745 -29670825 + HERVH LTR ERV1 4488 5149 -2564 1280 137 38 0 chr21 5236746 5236958 -29670612 + HERVH LTR ERV1 5600 5819 -1894 2346 100 48 13 chr21 5236956 5237335 -29670235 + HERVH LTR ERV1 7322 7713 0 2528 84 119 7 chr21 5237335 5237738 -29669832 + LTR7 LTR ERV1 1 448 -2 23 86 0 0 chr21 5238540 5238598 -29668972 + AT_rich Low_complexity Low_complexity 1 58 0 3337 35 12 0 chr21 5239336 5239739 -29667831 + L1PA3 LINE L1 5745 6152 -3 1498 215 16 50 chr21 5240544 5240921 -29666649 + MLT1A2 LTR MaLR 11 374 0 1425 243 22 3 chr21 5241933 5242254 -29665316 + MER58B DNA MER1_type 1 327 -14 795 197 0 0 chr21 5243519 5243656 -29663914 + MSTD LTR MaLR 3 139 -257 1142 162 6 0 chr21 5243671 5243850 -29663720 + AluJb SINE Alu 131 310 -2 905 186 69 14 chr21 5243891 5244104 -29663466 + MSTD LTR MaLR 212 396 0 7707 220 75 63 chr21 5244104 5244828 -29662742 + Zaphod DNA AcHobo 238 952 -3071 492 231 66 41 chr21 5244828 5244949 -29662621 + FLAM_A SINE Alu 2 125 -8 7707 220 75 63 chr21 5244949 5246756 -29660814 + Zaphod DNA AcHobo 952 2735 -1288 1802 138 7 4 chr21 5246756 5247025 -29660545 + AluSx SINE Alu 33 302 -10 7707 220 75 63 chr21 5247025 5247043 -29660527 + Zaphod DNA AcHobo 2735 2751 -1272 413 189 278 0 chr21 5247043 5247133 -29660437 + FLAM_A SINE Alu 1 115 -18 219 69 0 0 chr21 5247133 5247162 -29660408 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 7707 220 75 63 chr21 5247162 5247791 -29659779 + Zaphod DNA AcHobo 2750 3458 -565 915 215 61 7 chr21 5247860 5248139 -29659431 + Zaphod DNA AcHobo 3556 3849 -174 389 262 0 10 chr21 5248178 5248281 -29659289 + MER115 DNA AcHobo 592 693 0 243 152 0 0 chr21 5248446 5248492 -29659078 + T-rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr21 5249154 5249178 -29658392 + AT_rich Low_complexity Low_complexity 1 24 0 2122 100 7 0 chr21 5249215 5249495 -29658075 + AluSq SINE Alu 15 296 -17 1169 355 27 17 chr21 5250171 5250765 -29656805 - HERVL LTR ERVL -2104 3550 2951 1537 114 18 4 chr21 5250958 5251185 -29656385 - MER30 DNA MER1_type 0 230 1 294 350 35 20 chr21 5252203 5252400 -29655170 - LTR33 LTR ERVL -303 218 19 300 357 73 63 chr21 5252683 5252983 -29654587 - L2 LINE L2 -35 3237 2935 14103 201 32 30 chr21 5253594 5254232 -29653338 - L1MA4 LINE L1 -3 6479 5844 1880 156 3 3 chr21 5254232 5254539 -29653031 - AluSx SINE Alu -5 307 1 14103 201 32 30 chr21 5254539 5254894 -29652676 - L1MA4 LINE L1 -638 5844 5491 5197 55 8 5 chr21 5254894 5255565 -29652005 - L1PA7 LINE L1 -1 6153 5481 1454 188 30 20 chr21 5255565 5255863 -29651707 - AluSx SINE Alu -11 301 1 14103 201 32 30 chr21 5255863 5260532 -29647038 - L1MA4 LINE L1 -991 5491 833 189 0 0 0 chr21 5260532 5260553 -29647017 + (TG)n Simple_repeat Simple_repeat 2 22 0 14103 201 32 30 chr21 5260553 5261386 -29646184 - L1MA4 LINE L1 -5649 833 3 2363 68 7 3 chr21 5261782 5262091 -29645479 + AluY SINE Alu 1 310 -1 231 88 0 0 chr21 5262162 5262196 -29645374 + (A)n Simple_repeat Simple_repeat 1 34 0 1028 162 0 0 chr21 5262880 5263047 -29644523 + MLT1B LTR MaLR 2 168 -222 14464 184 37 28 chr21 5263061 5267995 -29639575 + L1MA3 LINE L1 14 5047 -2677 2429 84 0 0 chr21 5267995 5268304 -29639266 + AluY SINE Alu 2 310 -1 14464 184 37 28 chr21 5268304 5271004 -29636566 + L1MA3 LINE L1 5047 7722 -2 313 151 0 0 chr21 5271025 5271078 -29636492 + L1MB8 LINE L1 6126 6178 0 972 181 6 0 chr21 5271155 5271326 -29636244 + MLT1B LTR MaLR 219 390 0 2143 121 3 0 chr21 5271726 5272024 -29635546 - AluSx SINE Alu -13 299 1 2013 242 38 16 chr21 5272603 5273106 -29634464 - LTR40a LTR ERVL -5 514 1 410 236 45 11 chr21 5273440 5273529 -29634041 + MER58A DNA MER1_type 1 92 -15 1038 174 35 5 chr21 5273534 5273735 -29633835 - L1PA16 LINE L1 -4 6162 5956 712 215 38 25 chr21 5273760 5273918 -29633652 + MER58A DNA MER1_type 65 224 0 2373 149 29 7 chr21 5273947 5274363 -29633207 + L1PA16 LINE L1 5729 6153 -13 1693 161 0 4 chr21 5275769 5276036 -29631534 - AluJo SINE Alu -44 268 3 2116 163 51 22 chr21 5276227 5276639 -29630931 - MSTB LTR MaLR -2 424 1 2201 240 107 72 chr21 5276833 5277793 -29629777 + L1MC4a LINE L1 6441 7434 -374 613 255 73 0 chr21 5277943 5278245 -29629325 + L1MC4 LINE L1 7690 8028 -14 5878 132 80 2 chr21 5278423 5279723 -29627847 - L1MA1 LINE L1 -7 7316 5930 3031 214 24 19 chr21 5279721 5281317 -29626253 - L1 LINE L1 -815 5331 3649 342 197 28 0 chr21 5281346 5281417 -29626153 + L1M4 LINE L1 474 546 -5996 2135 250 29 17 chr21 5281438 5282097 -29625473 + L1M4 LINE L1 4639 5305 -1339 1995 129 0 0 chr21 5282103 5282423 -29625147 - AluSg SINE Alu 0 320 1 502 209 9 9 chr21 5282433 5282538 -29625032 - L1MA1 LINE L1 -1237 5930 5826 2144 234 25 12 chr21 5282539 5283053 -29624517 - L1MA1 LINE L1 -3402 3765 3245 6552 215 30 22 chr21 5283063 5285438 -29622132 - L1MA1 LINE L1 -3970 3198 809 235 186 0 0 chr21 5288635 5288678 -29618892 - MSTB1 LTR MaLR -13 419 377 353 178 12 31 chr21 5288704 5288867 -29618703 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 375 187 64 35 chr21 5288892 5289063 -29618507 + (CATTA)n Simple_repeat Simple_repeat 3 178 0 429 165 44 66 chr21 5289104 5289286 -29618284 + (CATTA)n Simple_repeat Simple_repeat 1 178 0 431 200 0 63 chr21 5289211 5289401 -29618169 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 448 137 16 33 chr21 5289413 5289595 -29617975 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 333 187 0 36 chr21 5289653 5289819 -29617751 + (CATAA)n Simple_repeat Simple_repeat 5 164 0 491 185 3 31 chr21 5289825 5290150 -29617420 + (TATAA)n Simple_repeat Simple_repeat 1 315 0 376 119 17 0 chr21 5290166 5290225 -29617345 - MSTB1 LTR MaLR -372 60 1 609 120 55 0 chr21 5290276 5290568 -29617002 + (TATAG)n Simple_repeat Simple_repeat 1 307 0 203 118 44 29 chr21 5290568 5290636 -29616934 + (CTATA)n Simple_repeat Simple_repeat 2 70 0 399 48 102 24 chr21 5290639 5290806 -29616764 + (TA)n Simple_repeat Simple_repeat 1 180 0 338 160 19 64 chr21 5290807 5290963 -29616607 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 439 96 51 40 chr21 5290963 5291140 -29616430 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 21 57 0 0 chr21 5291140 5291175 -29616395 + AT_rich Low_complexity Low_complexity 1 35 0 282 116 0 0 chr21 5291183 5291226 -29616344 + MSTB1 LTR MaLR 377 419 -13 2020 144 49 44 chr21 5291243 5291610 -29615960 - MSTB1 LTR MaLR -63 369 1 259 271 124 16 chr21 5292439 5292568 -29615002 - MIR SINE MIR -73 189 47 471 290 49 19 chr21 5292573 5292735 -29614835 + MIR SINE MIR 20 186 -76 307 82 41 0 chr21 5293288 5293337 -29614233 - Alu SINE Alu -6 294 244 938 167 0 0 chr21 5293337 5293481 -29614089 - AluJ SINE Alu -33 279 136 329 82 82 0 chr21 5293491 5293564 -29614006 + CT-rich Low_complexity Low_complexity 2 80 0 838 160 0 0 chr21 5293566 5293697 -29613873 - AluJ SINE Alu -169 133 3 21 0 0 0 chr21 5294452 5294473 -29613097 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr21 5295144 5295190 -29612380 + (CA)n Simple_repeat Simple_repeat 2 47 0 635 272 94 13 chr21 5295307 5295531 -29612039 - MIR SINE MIR 0 262 21 602 260 45 59 chr21 5295709 5295790 -29611780 + LTR41 LTR ERVL 1 82 -691 2083 171 26 0 chr21 5295790 5296169 -29611401 - MLT1B LTR MaLR -1 389 1 602 260 45 59 chr21 5296169 5296375 -29611195 + LTR41 LTR ERVL 82 284 -489 362 207 116 167 chr21 5296602 5297052 -29610518 + LTR41 LTR ERVL 337 763 -10 253 239 0 0 chr21 5297126 5297193 -29610377 + L1M4 LINE L1 4171 4237 -1909 329 205 23 78 chr21 5297608 5297753 -29609817 + MER58C DNA MER1_type 40 212 -3 194 246 18 18 chr21 5297761 5297818 -29609752 - L2 LINE L2 -1335 1979 1923 21 36 0 0 chr21 5298574 5298602 -29608968 + AT_rich Low_complexity Low_complexity 1 28 0 2156 248 45 24 chr21 5298610 5299351 -29608219 + L1M4 LINE L1 3289 4044 -2102 2062 75 0 0 chr21 5299674 5299942 -29607628 - L1PA8 LINE L1 -1 6171 5904 21 82 0 0 chr21 5300521 5300570 -29607000 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr21 5301140 5301169 -29606401 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 5301313 5301343 -29606227 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr21 5301782 5301811 -29605759 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 5301833 5301861 -29605709 + AT_rich Low_complexity Low_complexity 1 28 0 524 302 77 6 chr21 5303658 5303827 -29603743 - MLT1J2 LTR MaLR 0 450 270 13867 185 32 2 chr21 5304520 5307942 -29599628 - L1 LINE L1 -1026 6539 3017 501 189 0 146 chr21 5308605 5308790 -29598780 + MER53 DNA DNA 25 182 -7 408 187 0 0 chr21 5308730 5308805 -29598765 - MER53 DNA DNA -113 76 2 395 398 11 6 chr21 5309395 5309576 -29597994 - LTR16C LTR ERVL -4 487 306 1497 209 11 58 chr21 5310236 5310599 -29596971 + MLT2D LTR ERVL 3 348 -66 253 231 34 0 chr21 5310608 5310755 -29596815 + (TA)n Simple_repeat Simple_repeat 2 153 0 22 0 0 0 chr21 5311725 5311747 -29595823 + AT_rich Low_complexity Low_complexity 1 22 0 416 378 27 0 chr21 5312984 5313132 -29594438 - L2 LINE L2 -2079 1235 1084 1252 269 22 30 chr21 5313269 5313743 -29593827 + L1ME1 LINE L1 38 613 -5783 501 267 27 0 chr21 5313883 5314070 -29593500 + L1ME1 LINE L1 859 1050 -5346 1660 254 58 67 chr21 5314068 5314598 -29592972 + L1ME1 LINE L1 2742 3276 -2939 201 74 0 0 chr21 5314598 5314625 -29592945 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 40 0 0 chr21 5314634 5314659 -29592911 + (GA)n Simple_repeat Simple_repeat 2 26 0 1660 254 58 67 chr21 5314659 5315040 -29592530 + L1ME1 LINE L1 3284 3654 -2561 742 229 46 17 chr21 5315076 5315316 -29592254 + L1ME1 LINE L1 3781 4027 -2188 1546 246 68 20 chr21 5315357 5315800 -29591770 + MLT1D LTR MaLR 40 503 -2 631 233 40 50 chr21 5315800 5316002 -29591568 + L1ME1 LINE L1 4043 4242 -1973 1418 247 83 38 chr21 5316046 5316364 -29591206 + L1ME1 LINE L1 4324 4626 -1589 739 286 14 23 chr21 5316364 5316581 -29590989 - MER58C DNA MER1_type 0 215 1 1418 247 83 38 chr21 5316581 5316915 -29590655 + L1ME1 LINE L1 4626 5005 -1210 2028 139 48 23 chr21 5317025 5317378 -29590192 - THE1B LTR MaLR -2 362 1 702 267 0 0 chr21 5317570 5317716 -29589854 + MER58B DNA MER1_type 196 341 0 2728 232 27 68 chr21 5317727 5318659 -29588911 + L1ME1 LINE L1 5337 6230 -5 234 242 164 78 chr21 5318826 5318954 -29588616 - MER5B DNA MER1_type -39 139 1 249 180 0 0 chr21 5322010 5322060 -29585510 + T-rich Low_complexity Low_complexity 1 50 0 2091 126 0 7 chr21 5322466 5322768 -29584802 + AluSg SINE Alu 1 300 -10 3038 160 10 12 chr21 5323310 5323828 -29583742 + Tigger1 DNA MER2_type 31 547 -1871 6260 109 0 7 chr21 5323828 5325735 -29581835 + L1PA12 LINE L1 4261 6165 -3 2407 117 28 17 chr21 5327420 5327778 -29579792 + THE1B LTR MaLR 1 362 -2 912 135 0 0 chr21 5328516 5328664 -29578906 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 279 173 0 0 chr21 5328664 5328716 -29578854 + G-rich Low_complexity Low_complexity 2 53 0 270 295 16 21 chr21 5328842 5328950 -29578620 - MIR SINE MIR -78 130 24 229 167 17 17 chr21 5330831 5330891 -29576679 + GA-rich Low_complexity Low_complexity 1 60 0 692 194 7 0 chr21 5332013 5332168 -29575402 - MER3 DNA MER1_type 0 2585 2430 322 221 44 0 chr21 5332166 5332234 -29575336 - MER3 DNA MER1_type -92 117 47 243 170 0 0 chr21 5333059 5333106 -29574464 + (AATTG)n Simple_repeat Simple_repeat 3 49 0 2710 253 44 13 chr21 5333173 5334019 -29573551 + L1M4 LINE L1 3658 4529 -1617 1592 239 65 5 chr21 5334021 5334742 -29572828 + L1M4 LINE L1 4570 5341 -805 6238 167 45 36 chr21 5334743 5335704 -29571866 + L1PA8A LINE L1 5131 4720 -1411 204 40 0 0 chr21 5335704 5335729 -29571841 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 6238 167 45 36 chr21 5335729 5337128 -29570442 + L1PA8A LINE L1 4719 6104 -27 844 175 42 25 chr21 5337124 5337372 -29570198 + L1MC2 LINE L1 6137 7704 -13 2024 147 0 3 chr21 5337372 5337686 -29569884 + AluSp SINE Alu 1 313 0 426 250 100 0 chr21 5338077 5338217 -29569353 + L2 LINE L2 1889 2042 -1272 273 29 0 0 chr21 5338220 5338254 -29569316 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr21 5338268 5338289 -29569281 + (GA)n Simple_repeat Simple_repeat 2 22 0 377 348 75 19 chr21 5338301 5338620 -29568950 + L2 LINE L2 2110 2446 -868 336 148 0 0 chr21 5339166 5339227 -29568343 + (TC)n Simple_repeat Simple_repeat 1 61 0 218 182 0 0 chr21 5339357 5339401 -29568169 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 25 0 0 0 chr21 5339440 5339465 -29568105 + AT_rich Low_complexity Low_complexity 1 25 0 1945 96 48 0 chr21 5340339 5340658 -29566912 + AluSx SINE Alu 1 332 0 21 71 0 0 chr21 5341442 5341484 -29566086 + AT_rich Low_complexity Low_complexity 1 42 0 376 126 0 165 chr21 5342955 5343082 -29564488 + L1MA8 LINE L1 6004 6109 -182 266 345 113 28 chr21 5344840 5344982 -29562588 + MER5A DNA MER1_type 35 188 -1 2192 97 0 6 chr21 5345287 5345598 -29561972 + AluY SINE Alu 1 309 -2 963 157 17 23 chr21 5345613 5345785 -29561785 + AluSg/x SINE Alu 127 297 -13 22 56 0 0 chr21 5346635 5346671 -29560899 + AT_rich Low_complexity Low_complexity 1 36 0 462 224 41 29 chr21 5346799 5346969 -29560601 + L1MC4a LINE L1 5317 5488 -2320 742 207 123 18 chr21 5347145 5347374 -29560196 - MLT1E2 LTR MaLR 0 626 364 235 213 0 0 chr21 5347374 5347421 -29560149 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 226 259 0 44 chr21 5347423 5347517 -29560053 - MLT1D LTR MaLR -269 357 255 621 267 25 43 chr21 5347799 5348080 -29559490 + L1MC4a LINE L1 5677 5952 -1856 726 267 5 16 chr21 5348855 5349042 -29558528 - MLT1B LTR MaLR 0 374 190 833 209 102 5 chr21 5349079 5349116 -29558454 - MLT1B LTR MaLR -175 215 1 727 208 75 6 chr21 5349116 5349275 -29558295 - MLT1B LTR MaLR -220 170 1 762 11 0 0 chr21 5349748 5349835 -29557735 + (AATAG)n Simple_repeat Simple_repeat 5 91 0 1938 158 33 43 chr21 5350601 5350804 -29556766 - MLT1A1 LTR MaLR 0 365 166 2211 128 0 0 chr21 5350804 5351110 -29556460 + AluSx SINE Alu 3 308 -4 1938 158 33 43 chr21 5351110 5351274 -29556296 - MLT1A1 LTR MaLR -199 166 2 24 0 0 0 chr21 5351500 5351524 -29556046 + AT_rich Low_complexity Low_complexity 1 24 0 37543 83 12 8 chr21 5351990 5358093 -29549477 + L1PA6 LINE L1 22 6154 0 21 0 0 0 chr21 5358093 5358114 -29549456 + AT_rich Low_complexity Low_complexity 1 21 0 2103 122 0 39 chr21 5358132 5358443 -29549127 - AluSg SINE Alu -11 299 1 222 356 15 23 chr21 5358469 5358601 -29548969 + MER5A DNA MER1_type 18 148 -41 1679 130 0 4 chr21 5359120 5359374 -29548196 - L1PA15 LINE L1 -4 6161 5909 252 0 0 0 chr21 5361172 5361200 -29546370 + (TC)n Simple_repeat Simple_repeat 1 28 0 658 272 51 28 chr21 5363310 5363564 -29544006 - Charlie8 DNA MER1_type -2156 261 2 25 0 0 0 chr21 5363937 5363962 -29543608 + AT_rich Low_complexity Low_complexity 1 25 0 203 217 33 0 chr21 5364610 5364670 -29542900 + T-rich Low_complexity Low_complexity 1 62 0 2424 78 7 0 chr21 5364750 5365059 -29542511 - AluY SINE Alu 0 311 1 417 316 112 40 chr21 5365075 5365398 -29542172 - MLT1L LTR MaLR -80 535 190 309 303 41 21 chr21 5365412 5365557 -29542013 - MLT1J LTR MaLR -363 148 1 1981 174 59 45 chr21 5365822 5366246 -29541324 - MSTB1 LTR MaLR -2 430 1 373 235 0 0 chr21 5366976 5367057 -29540513 - MER52A LTR ERV1 -82 1673 1593 244 290 0 0 chr21 5367130 5367192 -29540378 - MER52A LTR ERV1 -346 1409 1348 941 231 66 49 chr21 5367431 5367855 -29539715 - MER52A LTR ERV1 -523 1232 663 21 57 0 0 chr21 5371790 5371825 -29535745 + AT_rich Low_complexity Low_complexity 1 35 0 5135 177 27 20 chr21 5371842 5372486 -29535084 - L1PA16 LINE L1 -21 6145 5507 2354 106 0 0 chr21 5372486 5372798 -29534772 - AluSx SINE Alu 0 312 1 5135 177 27 20 chr21 5372798 5374002 -29533568 - L1PA16 LINE L1 -659 5507 4288 2309 228 12 8 chr21 5373993 5374589 -29532981 - L1 LINE L1 -1628 4518 3921 189 200 0 67 chr21 5376430 5376490 -29531080 - L2 LINE L2 -341 2972 2917 25 31 0 0 chr21 5377106 5377138 -29530432 + AT_rich Low_complexity Low_complexity 1 32 0 592 245 42 42 chr21 5377226 5377442 -29530128 - L1MA9 LINE L1 -39 6273 6058 6466 76 18 10 chr21 5379844 5380772 -29526798 + L1PA10 LINE L1 5223 6157 -11 1378 221 17 40 chr21 5382695 5383048 -29524522 - MLT1A1 LTR MaLR -2 363 19 21 0 0 0 chr21 5383107 5383128 -29524442 + AT_rich Low_complexity Low_complexity 1 21 0 188 293 0 0 chr21 5383466 5383507 -29524063 - L3 LINE CR1 -13 1564 1524 1572 318 55 5 chr21 5384276 5384930 -29522640 - HERV16 LTR ERVL -4205 791 105 676 305 82 72 chr21 5385030 5385433 -29522137 - LTR16A LTR ERVL -23 427 21 379 310 8 0 chr21 5385467 5385596 -29521974 + L1MC4 LINE L1 6920 7049 -993 967 277 38 40 chr21 5385648 5385995 -29521575 + L1MC4 LINE L1 7093 7438 -604 557 299 62 24 chr21 5385996 5386337 -29521233 + L1MC4 LINE L1 7450 7803 -239 38 51 0 0 chr21 5386481 5386540 -29521030 + AT_rich Low_complexity Low_complexity 1 59 0 335 311 0 0 chr21 5386953 5387043 -29520527 + L1MC4 LINE L1 6614 6703 -1339 349 300 0 0 chr21 5386965 5387055 -29520515 - L1MC4 LINE L1 -1339 6703 6614 635 172 90 0 chr21 5387076 5387198 -29520372 + FLAM_A SINE Alu 1 133 0 2372 123 5 21 chr21 5388627 5389008 -29518562 - THE1C LTR MaLR 0 375 1 2013 117 29 0 chr21 5390241 5390555 -29517015 - AluSx SINE Alu 0 322 1 2070 135 7 0 chr21 5390885 5391188 -29516382 + AluSq SINE Alu 1 305 -8 505 192 16 0 chr21 5391188 5391313 -29516257 + GA-rich Low_complexity Low_complexity 1 127 0 1698 218 60 3 chr21 5391428 5391638 -29515932 - MLT1F LTR MaLR -5 537 340 2626 163 5 0 chr21 5391638 5392068 -29515502 + MSTB1 LTR MaLR 1 432 0 1698 218 60 3 chr21 5392068 5392370 -29515200 - MLT1F LTR MaLR -202 340 1 275 291 78 82 chr21 5392370 5392576 -29514994 - L2 LINE L2 -967 2347 2143 1042 212 57 79 chr21 5392996 5393364 -29514206 - MLT1A2 LTR MaLR -13 361 2 247 293 114 29 chr21 5393928 5394068 -29513502 - MIR SINE MIR -110 152 1 22 0 0 0 chr21 5394589 5394611 -29512959 + AT_rich Low_complexity Low_complexity 1 22 0 996 148 0 12 chr21 5397835 5398002 -29509568 + FRAM SINE Alu 12 166 -10 898 230 13 44 chr21 5398187 5398413 -29509157 + MER20 DNA MER1_type 1 219 0 36 82 0 0 chr21 5398598 5398683 -29508887 + AT_rich Low_complexity Low_complexity 1 85 0 310 202 3 57 chr21 5399967 5400117 -29507453 - MER39 LTR ERV1 -20 687 380 907 203 212 0 chr21 5400135 5400347 -29507223 - AluJo SINE Alu -17 295 39 648 207 43 117 chr21 5400358 5400658 -29506912 - MER39 LTR ERV1 -170 537 260 402 151 0 0 chr21 5400756 5400829 -29506741 + (CA)n Simple_repeat Simple_repeat 1 73 0 1736 162 29 76 chr21 5401468 5401888 -29505682 + MSTB1 LTR MaLR 29 428 -4 201 129 0 0 chr21 5402108 5402139 -29505431 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 22 0 0 0 chr21 5402325 5402347 -29505223 + AT_rich Low_complexity Low_complexity 1 22 0 855 0 0 0 chr21 5403007 5403102 -29504468 + (TA)n Simple_repeat Simple_repeat 1 95 0 351 0 0 0 chr21 5403101 5403140 -29504430 + (GA)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr21 5403156 5403179 -29504391 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 677 298 60 5 chr21 5404100 5404318 -29503252 - MIR SINE MIR -32 230 1 27 0 0 0 chr21 5404782 5404809 -29502761 + AT_rich Low_complexity Low_complexity 1 27 0 183 227 45 0 chr21 5405254 5405298 -29502272 + L2 LINE L2 3214 3259 -13 561 181 13 7 chr21 5405422 5405571 -29501999 + GA-rich Low_complexity Low_complexity 3 152 0 2983 67 9 20 chr21 5405571 5406018 -29501552 + LTR7 LTR ERV1 1 442 -8 209 159 45 0 chr21 5406022 5406066 -29501504 + GA-rich Low_complexity Low_complexity 2 47 0 1668 223 40 3 chr21 5407915 5408291 -29499279 - MLT1B LTR MaLR 0 390 1 34887 40 2 1 chr21 5408351 5414368 -29493202 + L1PA3 LINE L1 1 6155 0 2136 164 83 8 chr21 5414601 5414997 -29492573 + MSTB LTR MaLR 1 426 0 1662 162 18 6 chr21 5416001 5416329 -29491241 + L1MA4A LINE L1 5966 6297 -6 23 78 0 0 chr21 5416405 5416456 -29491114 + AT_rich Low_complexity Low_complexity 1 51 0 352 293 73 40 chr21 5417052 5417202 -29490368 - L1ME4a LINE L1 -35 6086 5932 25 31 0 0 chr21 5417281 5417313 -29490257 + AT_rich Low_complexity Low_complexity 1 32 0 729 257 22 0 chr21 5417336 5417515 -29490055 - MLT2B1 LTR ERVL 0 520 338 2915 16 0 0 chr21 5417898 5418244 -29489326 + AluYb8 SINE Alu 1 346 0 184 273 52 26 chr21 5418870 5418947 -29488623 + L2 LINE L2 3160 3238 -75 1568 217 46 11 chr21 5419177 5419546 -29488024 + MER70B LTR ERVL 93 474 -104 262 171 0 0 chr21 5419577 5419618 -29487952 - MLT1E2 LTR MaLR -570 56 16 2961 216 54 11 chr21 5420110 5420408 -29487162 + MER45B DNA AcHobo 243 527 -1054 2612 83 11 0 chr21 5420408 5420759 -29486811 + THE1A LTR MaLR 1 355 0 2961 216 54 11 chr21 5420759 5421215 -29486355 + MER45B DNA AcHobo 527 1030 -10 21 0 0 0 chr21 5421445 5421466 -29486104 + AT_rich Low_complexity Low_complexity 1 21 0 6266 252 21 24 chr21 5422131 5424558 -29483012 + L1PA11 LINE L1 1 3208 -4376 11678 158 12 15 chr21 5424561 5426861 -29480709 + L1PA11 LINE L1 3671 5963 -1621 2514 91 0 19 chr21 5426861 5427223 -29480347 - THE1A LTR MaLR 0 355 1 10808 110 1 1 chr21 5427223 5428779 -29478791 - THE1A-int LTR MaLR -25 1555 1 2553 107 3 0 chr21 5428779 5429133 -29478437 - THE1A LTR MaLR 0 355 1 5553 108 34 25 chr21 5429133 5430789 -29476781 + L1PA11 LINE L1 5959 7612 0 25 0 0 0 chr21 5431170 5431195 -29476375 + AT_rich Low_complexity Low_complexity 1 25 0 899 122 96 0 chr21 5431210 5431366 -29476204 + L1PA13 LINE L1 5974 6144 -19 2120 110 7 0 chr21 5432567 5432848 -29474722 + AluSq SINE Alu 1 283 -30 3873 168 22 7 chr21 5433067 5433801 -29473769 - L1MB1 LINE L1 0 6168 5424 1229 178 9 9 chr21 5433821 5434034 -29473536 + AluJb SINE Alu 87 299 -13 448 64 0 77 chr21 5434037 5434115 -29473455 + L1M3 LINE L1 5363 5434 -734 261 0 0 0 chr21 5434330 5434359 -29473211 + (T)n Simple_repeat Simple_repeat 1 29 0 423 276 145 28 chr21 5435662 5435945 -29471625 + L2 LINE L2 1363 1678 -1636 257 287 32 76 chr21 5435988 5436145 -29471425 + L2 LINE L2 1809 1958 -1356 311 260 51 117 chr21 5436162 5436358 -29471212 - L2 LINE L2 0 3313 3131 1295 255 65 19 chr21 5436373 5436788 -29470782 - MER70B LTR ERVL -144 434 1 1325 293 70 25 chr21 5436803 5437453 -29470117 - L2 LINE L2 -192 3121 2433 943 266 83 8 chr21 5437615 5438008 -29469562 - L2 LINE L2 -1208 2106 1657 494 245 56 21 chr21 5438010 5438153 -29469417 + L2 LINE L2 2397 2544 -770 731 221 81 81 chr21 5438191 5438675 -29468895 + L1MC5 LINE L1 7193 7676 -285 757 144 8 8 chr21 5438691 5438855 -29468715 - AluJ SINE Alu 0 329 166 675 154 0 0 chr21 5438853 5438957 -29468613 - AluJ SINE Alu -203 109 6 3623 53 0 7 chr21 5439278 5439729 -29467841 + LTR7 LTR ERV1 1 448 -2 18728 104 10 18 chr21 5439731 5442749 -29464821 + HERVH LTR ERV1 1 2995 -4718 748 160 49 0 chr21 5442728 5442872 -29464698 + HERVH LTR ERV1 3140 3290 -4423 7750 114 4 7 chr21 5442862 5444589 -29462981 + HERVH LTR ERV1 3492 5233 -1858 1339 120 19 0 chr21 5444590 5444806 -29462764 + HERVH LTR ERV1 5600 5819 -1894 2365 84 42 13 chr21 5444806 5445185 -29462385 + HERVH LTR ERV1 7324 7713 0 2835 88 2 7 chr21 5445185 5445595 -29461975 + LTR7 LTR ERV1 1 408 -42 844 112 154 7 chr21 5447626 5447769 -29459801 + AluSp SINE Alu 137 300 -13 26 0 0 0 chr21 5448521 5448547 -29459023 + AT_rich Low_complexity Low_complexity 1 26 0 573 328 44 41 chr21 5449642 5449980 -29457590 + L1PBb LINE L1 14 352 -6497 9697 233 23 24 chr21 5451235 5452603 -29454967 + L1PBb LINE L1 1452 2820 -4028 2201 124 7 0 chr21 5452603 5452910 -29454660 + AluSg SINE Alu 1 309 -1 9697 233 23 24 chr21 5452910 5455128 -29452442 + L1PBb LINE L1 2820 5122 -1726 2349 64 0 14 chr21 5455158 5455455 -29452115 + AluY SINE Alu 16 308 -3 4092 147 8 0 chr21 5455457 5456124 -29451446 + L1PA16 LINE L1 5491 6162 -4 442 250 76 0 chr21 5456281 5456413 -29451157 + Charlie7 DNA MER1_type 1 142 -2470 303 200 338 0 chr21 5456516 5456596 -29450974 + FLAM_C SINE Alu 1 107 -26 234 62 0 0 chr21 5456651 5456683 -29450887 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 921 227 0 0 chr21 5456685 5456857 -29450713 + AluJb SINE Alu 136 307 -5 255 152 0 0 chr21 5457110 5457156 -29450414 + GA-rich Low_complexity Low_complexity 3 48 0 2092 128 3 10 chr21 5457201 5457505 -29450065 + AluSg SINE Alu 1 302 -8 436 381 75 54 chr21 5458117 5458466 -29449104 - L2 LINE L2 0 3272 2917 511 252 35 17 chr21 5458819 5459072 -29448498 - L1ME LINE L1 -5183 1764 1385 732 298 59 32 chr21 5460250 5460589 -29446981 + LTR16C LTR ERVL 131 478 -13 189 107 0 0 chr21 5461045 5461073 -29446497 + (TG)n Simple_repeat Simple_repeat 2 29 0 907 194 26 31 chr21 5462035 5462226 -29445344 + MER20 DNA MER1_type 29 218 -1 10032 165 22 23 chr21 5464432 5464767 -29442803 + L1M1 LINE L1 1868 2202 -5363 2405 94 3 0 chr21 5464767 5465076 -29442494 - AluSp SINE Alu -3 310 1 10032 165 22 23 chr21 5465076 5467289 -29440281 + L1M1 LINE L1 2202 4417 -3148 227 29 0 0 chr21 5467292 5467326 -29440244 - L1PA2 LINE L1 -4 6151 6118 1077 213 41 0 chr21 5467321 5467612 -29439958 + L1M1 LINE L1 4408 4710 -2855 478 219 21 96 chr21 5467622 5467709 -29439861 + L1M1 LINE L1 4798 4866 -2699 1692 179 0 21 chr21 5467709 5468024 -29439546 + AluSx SINE Alu 1 309 0 478 219 21 96 chr21 5468024 5468122 -29439448 + L1M1 LINE L1 4866 4970 -2595 11294 189 20 11 chr21 5468120 5468176 -29439394 - L1P LINE L1 -1406 4740 4686 2127 140 73 12 chr21 5468176 5468519 -29439051 - THE1B LTR MaLR 0 364 1 11294 189 20 11 chr21 5468519 5470760 -29436810 - L1P LINE L1 -1460 4686 2422 31030 68 3 3 chr21 5470767 5475745 -29431825 + L1PA6 LINE L1 1178 6154 0 1125 245 0 8 chr21 5475992 5476233 -29431337 - MER8 DNA MER2_type 0 239 1 480 334 29 15 chr21 5477921 5478134 -29429436 - MIR SINE MIR -3 259 45 366 295 27 40 chr21 5479049 5479198 -29428372 - AluYb8 SINE Alu -7 301 155 219 309 15 0 chr21 5479607 5479675 -29427895 + L2 LINE L2 3242 3310 -3 1022 269 58 72 chr21 5479920 5480473 -29427097 + MLT1H LTR MaLR 1 545 -4 37 52 0 0 chr21 5480742 5480800 -29426770 + AT_rich Low_complexity Low_complexity 1 58 0 783 71 0 0 chr21 5481381 5481479 -29426091 + L1PA3 LINE L1 1 98 -6048 36132 37 4 1 chr21 5481477 5486870 -29420700 + L1PA3 LINE L1 623 6155 0 2529 65 0 0 chr21 5487514 5487820 -29419750 - AluY SINE Alu -5 306 1 459 295 16 0 chr21 5487979 5488101 -29419469 + MLT1I LTR MaLR 67 190 -219 987 205 0 0 chr21 5488483 5488668 -29418902 - L1PB4 LINE L1 -5 6151 5967 203 184 0 0 chr21 5488737 5488775 -29418795 + A-rich Low_complexity Low_complexity 1 38 0 7288 21 9 2 chr21 5490244 5491107 -29416463 - L1PA3 LINE L1 0 6155 5287 1069 58 0 0 chr21 5491106 5491245 -29416325 + L1P LINE L1 1920 2058 -4088 32 57 0 0 chr21 5491391 5491444 -29416126 + AT_rich Low_complexity Low_complexity 1 53 0 299 264 21 50 chr21 5491881 5492021 -29415549 - MIR SINE MIR -10 252 117 912 263 32 53 chr21 5492062 5492125 -29415445 + L1M4c LINE L1 2046 2109 -4397 2137 123 0 0 chr21 5492125 5492426 -29415144 - AluY SINE Alu -10 301 1 912 263 32 53 chr21 5492426 5492906 -29414664 + L1M4c LINE L1 2109 2620 -3886 369 145 118 0 chr21 5492907 5492983 -29414587 + L1M4c LINE L1 3815 3899 -2483 821 241 36 22 chr21 5493011 5493886 -29413684 + L1MB7 LINE L1 2582 3443 -2939 2186 134 3 0 chr21 5493886 5494192 -29413378 + AluSx SINE Alu 1 307 -5 821 241 36 22 chr21 5494192 5495203 -29412367 + L1MB7 LINE L1 3443 4730 -1652 4325 147 58 37 chr21 5495194 5496025 -29411545 + L1PB1 LINE L1 728 1575 -6010 8950 241 22 9 chr21 5496037 5499018 -29408552 + L1PB1 LINE L1 2804 5803 -1781 299 164 0 0 chr21 5499019 5499080 -29408490 + LTR1B LTR ERV1 1 61 -765 1405 106 55 5 chr21 5499084 5499301 -29408269 - MER52-int LTR ERV1 -4571 2520 2293 26119 152 7 11 chr21 5499299 5503389 -29404181 + LTR1B-int LTR ERV1 2527 6601 -490 1496 151 73 0 chr21 5503399 5503658 -29403912 + LTR1B-int LTR ERV1 6745 7022 -69 1426 252 121 53 chr21 5503660 5504370 -29403200 + LTR1B LTR ERV1 69 826 0 5775 161 14 12 chr21 5504370 5506154 -29401416 + L1PB1 LINE L1 5802 7587 -2 4297 189 38 5 chr21 5506161 5507695 -29399875 + L1MB7 LINE L1 4711 6294 -126 4223 165 14 0 chr21 5507708 5508434 -29399136 - L1PB4 LINE L1 -20 6136 5401 592 85 217 0 chr21 5508435 5508541 -29399029 + L1MB7 LINE L1 6276 6404 -16 27 29 0 0 chr21 5508541 5508575 -29398995 + AT_rich Low_complexity Low_complexity 1 34 0 877 263 80 112 chr21 5508804 5509802 -29397768 + MER52A LTR ERV1 640 1755 0 3495 182 55 34 chr21 5509802 5510533 -29397037 + MER52A-int LTR ERV1 2 747 -6344 1408 144 7 88 chr21 5510530 5510814 -29396756 + MER52A-int LTR ERV1 878 1138 -5953 2174 151 58 2 chr21 5511130 5511542 -29396028 + LTR19A LTR ERV1 1 435 -51 2042 51 0 0 chr21 5511543 5511796 -29395774 - L1PA5 LINE L1 -204 5950 5698 1473 74 5 10 chr21 5511796 5511999 -29395571 + L1PA5 LINE L1 5953 6154 0 359 85 17 0 chr21 5512002 5512061 -29395509 + LTR19A LTR ERV1 425 484 -2 457 275 38 56 chr21 5512334 5512494 -29395076 - MIR3 SINE MIR -21 187 31 705 109 16 16 chr21 5515681 5515809 -29391761 + (GGAA)n Simple_repeat Simple_repeat 2 129 0 210 37 0 0 chr21 5517806 5517833 -29389737 + (CA)n Simple_repeat Simple_repeat 2 28 0 228 86 0 0 chr21 5518120 5518155 -29389415 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 577 259 77 41 chr21 5518365 5518585 -29388985 - MLT1D LTR MaLR -263 242 15 1044 314 71 35 chr21 5518666 5519089 -29388481 + HAL1 LINE L1 562 999 -1508 311 290 44 23 chr21 5519144 5519388 -29388182 + L1MEc LINE L1 19 1799 -777 1923 286 71 8 chr21 5519385 5520127 -29387443 + L1ME1 LINE L1 193 981 -5415 1098 274 46 24 chr21 5520168 5520709 -29386861 + L1ME1 LINE L1 1094 1646 -4750 1688 217 67 22 chr21 5520946 5521393 -29386177 + MLT1C LTR MaLR 1 467 0 331 289 61 34 chr21 5521501 5521600 -29385970 + L1ME1 LINE L1 3173 3268 -2947 7005 66 1 0 chr21 5521600 5522991 -29384579 + L1PA7 LINE L1 4761 6153 -1 331 289 61 34 chr21 5522991 5523185 -29384385 + L1ME1 LINE L1 3268 3474 -2741 2217 217 35 29 chr21 5523169 5523765 -29383805 + L1ME1 LINE L1 4593 5195 -1020 2278 126 8 30 chr21 5523765 5524137 -29383433 - THE1B LTR MaLR 0 364 1 2217 217 35 29 chr21 5524137 5524194 -29383376 + L1ME1 LINE L1 5195 5250 -965 1342 189 36 8 chr21 5524217 5524466 -29383104 - AluJo SINE Alu -56 256 1 2362 252 31 9 chr21 5524484 5525279 -29382291 + L1ME1 LINE L1 5245 6054 -181 326 276 63 29 chr21 5525306 5525545 -29382025 + L1MC4 LINE L1 6983 7229 -813 32 0 0 0 chr21 5526506 5526538 -29381032 + AT_rich Low_complexity Low_complexity 1 32 0 236 278 56 106 chr21 5526716 5526914 -29380656 - MER21A LTR ERV1 -109 822 635 619 274 36 50 chr21 5526927 5527318 -29380252 - MER21B LTR ERV1 -421 442 21 582 287 101 22 chr21 5527589 5527857 -29379713 + MER110 LTR ERV1 195 483 -8 632 171 103 20 chr21 5527959 5528105 -29379465 + LTR40b LTR ERVL 305 462 0 321 325 12 6 chr21 5529596 5529759 -29377811 + GA-rich Low_complexity Low_complexity 2 165 0 1252 209 35 60 chr21 5529982 5530351 -29377219 + MLT1A1 LTR MaLR 4 363 -2 24 0 0 0 chr21 5530460 5530484 -29377086 + AT_rich Low_complexity Low_complexity 1 24 0 1699 121 103 18 chr21 5530563 5530836 -29376734 - MER1B DNA MER1_type 0 339 44 474 88 0 0 chr21 5531414 5531482 -29376088 + (TA)n Simple_repeat Simple_repeat 2 69 0 1094 149 20 5 chr21 5534467 5534662 -29372908 + L1PB1 LINE L1 3 200 -6663 8973 121 27 5 chr21 5534654 5536586 -29370984 + L1PB1 LINE L1 625 2740 -4123 12370 193 10 7 chr21 5536575 5539764 -29367806 + L1PB1 LINE L1 3310 6508 -359 2454 118 11 0 chr21 5539802 5540167 -29367403 + L1PB1 LINE L1 6498 6866 -1 274 326 74 37 chr21 5540268 5540458 -29367112 + MIR SINE MIR 46 242 -20 23 0 0 0 chr21 5540657 5540680 -29366890 + AT_rich Low_complexity Low_complexity 1 23 0 1184 181 50 32 chr21 5541182 5541464 -29366106 - L1PB4 LINE L1 -1 6155 5869 1372 234 34 2 chr21 5542058 5542468 -29365102 + L1MA3 LINE L1 2938 3360 -2786 549 0 0 0 chr21 5542469 5542530 -29365040 + (TA)n Simple_repeat Simple_repeat 2 62 0 8374 174 10 17 chr21 5542656 5544782 -29362788 + L1MA3 LINE L1 3362 5480 -743 3624 114 15 0 chr21 5544782 5545323 -29362247 + L1PA14 LINE L1 5606 6159 -2 5548 114 2 8 chr21 5545335 5546179 -29361391 + L1MA3 LINE L1 5460 6298 -7 1392 205 52 74 chr21 5546204 5546636 -29360934 - MLT1C LTR MaLR -38 588 8 1797 214 29 78 chr21 5546642 5547127 -29360443 - MLT1C-int LTR MaLR 0 1371 911 2612 204 75 29 chr21 5547267 5548006 -29359564 - MLT1C-int LTR MaLR -477 894 4 280 133 0 22 chr21 5548008 5548053 -29359517 - MLT2C1 LTR ERVL 0 397 354 271 231 0 0 chr21 5548060 5548112 -29359458 - MLT2C1 LTR ERVL -228 169 118 1669 172 3 21 chr21 5548118 5548403 -29359167 + AluJo SINE Alu 2 281 -31 1965 120 15 19 chr21 5548453 5548777 -29358793 + L1MA8 LINE L1 5948 6270 -21 398 267 96 96 chr21 5549380 5549736 -29357834 - L1MC4a LINE L1 -1774 6034 5679 2174 106 10 10 chr21 5550369 5550672 -29356898 - AluSg SINE Alu -7 303 1 3122 81 2 0 chr21 5552290 5552711 -29354859 + L1P LINE L1 4172 4593 -1553 2099 104 3 7 chr21 5552711 5552998 -29354572 + AluSq SINE Alu 22 307 -6 1937 154 0 6 chr21 5553121 5553432 -29354138 + AluSx SINE Alu 3 311 -1 320 217 0 24 chr21 5554371 5554454 -29353116 + LTR33 LTR ERVL 441 521 0 1489 158 0 14 chr21 5554814 5555092 -29352478 + L1MA4 LINE L1 6020 6293 -7 309 267 69 74 chr21 5555696 5555913 -29351657 - L2 LINE L2 -1063 2251 2036 23 0 0 0 chr21 5556449 5556472 -29351098 + AT_rich Low_complexity Low_complexity 1 23 0 403 269 94 60 chr21 5557216 5557461 -29350109 + LTR16A LTR ERVL 19 270 -180 668 270 35 6 chr21 5557617 5557791 -29349779 + HERV16 LTR ERVL 1 179 -4817 29217 106 15 22 chr21 5558008 5564476 -29343094 + L1PA7 LINE L1 1 6469 0 1336 212 13 55 chr21 5564678 5564989 -29342581 + AluJo SINE Alu 1 298 -4 2258 140 6 25 chr21 5565085 5565449 -29342121 + THE1B LTR MaLR 8 364 0 11471 108 2 0 chr21 5565449 5567025 -29340545 + THE1B-int LTR MaLR 1 1580 0 1984 147 46 26 chr21 5567025 5567372 -29340198 + THE1B LTR MaLR 1 354 -10 21 0 0 0 chr21 5568159 5568180 -29339390 + AT_rich Low_complexity Low_complexity 1 21 0 294 224 17 0 chr21 5570580 5570638 -29336932 + L1ME LINE L1 5521 5579 -542 767 321 91 13 chr21 5570685 5571242 -29336328 + L2 LINE L2 2550 3171 -142 1086 141 0 6 chr21 5571371 5571541 -29336029 + AluSg/x SINE Alu 136 304 -6 274 277 0 0 chr21 5571544 5571609 -29335961 + L2 LINE L2 3226 3290 -23 251 279 0 0 chr21 5571908 5571987 -29335583 + A-rich Low_complexity Low_complexity 1 79 0 1745 72 0 79 chr21 5572442 5572720 -29334850 - L1P LINE L1 -1188 4958 4703 327 318 91 34 chr21 5573551 5573815 -29333755 + HAL1 LINE L1 2228 2506 -1 992 353 69 44 chr21 5573832 5573986 -29333584 - L2 LINE L2 -1300 2014 1865 1760 171 0 35 chr21 5573986 5574302 -29333268 + AluJb SINE Alu 1 305 -7 992 353 69 44 chr21 5574302 5575071 -29332499 - L2 LINE L2 -1449 1865 1068 194 278 111 14 chr21 5575204 5575276 -29332294 - L2 LINE L2 -2254 1060 982 364 342 88 67 chr21 5576390 5576901 -29330669 - L2 LINE L2 -834 2480 1959 26 50 0 0 chr21 5576986 5577026 -29330544 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr21 5578813 5578833 -29328737 + (A)n Simple_repeat Simple_repeat 1 20 0 1789 135 11 11 chr21 5579043 5579351 -29328219 - AluSx SINE Alu 0 310 3 538 231 15 0 chr21 5579780 5579914 -29327656 + L1PB4 LINE L1 6021 6156 0 482 205 232 33 chr21 5579985 5580136 -29327434 + MER5A DNA MER1_type 9 189 0 869 152 0 14 chr21 5584560 5584698 -29322872 + FAM SINE Alu 37 172 -13 23 0 0 0 chr21 5585012 5585035 -29322535 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 5587053 5587075 -29320495 + AT_rich Low_complexity Low_complexity 1 22 0 14942 80 12 1 chr21 5589145 5591115 -29316455 + L1PA4 LINE L1 2 1991 -4155 21778 46 3 1 chr21 5591085 5595399 -29312171 + L1PA4 LINE L1 1839 6151 -4 552 252 66 87 chr21 5595402 5595660 -29311910 + L1M4b LINE L1 64 626 -6229 457 262 62 108 chr21 5595781 5596151 -29311419 + L1M4b LINE L1 836 1188 -5667 248 75 0 25 chr21 5596265 5596305 -29311265 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 327 246 33 76 chr21 5596307 5596518 -29311052 + L1M4b LINE L1 1240 1441 -5418 12164 199 41 15 chr21 5596521 5598929 -29308641 + L1M1 LINE L1 14 2482 -5083 2508 195 19 41 chr21 5598925 5599822 -29307748 + L1M1 LINE L1 3475 4409 -3156 438 187 0 0 chr21 5599822 5599897 -29307673 + THE1C LTR MaLR 301 375 0 7472 121 19 2 chr21 5599897 5600968 -29306602 + THE1C-int LTR MaLR 1 1089 -491 22688 156 15 7 chr21 5600971 5605097 -29302473 + L1P4 LINE L1 1363 5521 -647 829 267 50 5 chr21 5605101 5605303 -29302267 + L1M4b LINE L1 3419 3629 -3328 4843 93 9 9 chr21 5605305 5605952 -29301618 + L1PA10 LINE L1 5517 6163 -5 485 243 40 36 chr21 5605996 5606218 -29301352 + L1M4b LINE L1 1536 1758 -5097 952 180 39 0 chr21 5606322 5606500 -29301070 + MER2 DNA MER2_type 159 343 -1 2266 182 55 16 chr21 5606500 5606988 -29300582 + L1MA9 LINE L1 5785 6291 -21 1099 239 46 46 chr21 5607011 5607400 -29300170 + L1M4b LINE L1 4776 5164 -1793 1248 224 0 20 chr21 5607415 5607670 -29299900 + AluJo SINE Alu 1 250 -62 6094 199 15 8 chr21 5607685 5608888 -29298682 + L1PA13 LINE L1 1181 2403 -4394 2596 131 11 0 chr21 5608888 5609248 -29298322 + THE1B LTR MaLR 1 364 0 6094 199 15 8 chr21 5609248 5609340 -29298230 + L1PA13 LINE L1 2403 2493 -4304 7354 58 14 17 chr21 5609342 5610946 -29296624 - SVA Other Other -723 1386 19 239 95 191 0 chr21 5610946 5610988 -29296582 + LTR9B LTR ERV1 88 137 -507 11959 225 26 2 chr21 5611081 5612385 -29295185 + L1PA13 LINE L1 2480 3751 -3046 377 20 20 0 chr21 5612385 5612435 -29295135 + (CA)n Simple_repeat Simple_repeat 2 52 0 11959 225 26 2 chr21 5612435 5613894 -29293676 + L1PA13 LINE L1 3751 5309 -1488 1734 164 38 67 chr21 5614827 5615198 -29292372 + LTR12 LTR ERV1 81 440 -231 3940 210 67 49 chr21 5615215 5616302 -29291268 + HERV9 LTR ERV1 54 1160 -7239 29067 148 12 14 chr21 5616340 5623278 -29284292 + HERV9 LTR ERV1 1361 8157 -242 6794 8 0 3 chr21 5623279 5624030 -29283540 - L1HS LINE L1 -1 6154 5406 1785 139 7 0 chr21 5624030 5624304 -29283266 + HERV9 LTR ERV1 8120 8395 -4 1012 231 101 32 chr21 5624338 5624684 -29282886 + pTR5 LTR ERV1 1850 2219 -219 1922 152 3 3 chr21 5625248 5625544 -29282026 + AluJo SINE Alu 1 296 -16 2240 185 27 6 chr21 5625629 5626115 -29281455 + L1PA13 LINE L1 5295 5790 -1007 30565 108 8 18 chr21 5626140 5626541 -29281029 + L1PA7 LINE L1 3 407 -6062 252 0 0 0 chr21 5626541 5626569 -29281001 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 30565 108 8 18 chr21 5626569 5629411 -29278159 + L1PA7 LINE L1 407 3276 -3193 1659 124 56 12 chr21 5629411 5629661 -29277909 + AluY SINE Alu 33 293 -18 30565 108 8 18 chr21 5629661 5632881 -29274689 + L1PA7 LINE L1 3276 6432 -37 10047 226 27 17 chr21 5632879 5635759 -29271811 + L1PA12 LINE L1 2626 5536 -2048 6342 168 9 7 chr21 5635810 5636849 -29270721 + L1MA3 LINE L1 12 1052 -6513 864 200 50 0 chr21 5636850 5637010 -29270560 + L1MA3 LINE L1 1856 2023 -5542 10539 176 23 28 chr21 5637004 5637645 -29269925 + L1MA3 LINE L1 2693 3336 -4229 4251 54 0 2 chr21 5637645 5638143 -29269427 + L1PA7 LINE L1 5651 6147 -7 10539 176 23 28 chr21 5638143 5639162 -29268408 + L1MA3 LINE L1 3336 4359 -3206 1353 180 83 55 chr21 5639162 5639451 -29268119 + AluJb SINE Alu 4 300 -12 10539 176 23 28 chr21 5639451 5639584 -29267986 + L1MA3 LINE L1 4359 4491 -3074 1581 180 32 4 chr21 5639584 5639862 -29267708 + AluJb SINE Alu 10 295 -17 10539 176 23 28 chr21 5639862 5641305 -29266265 + L1MA3 LINE L1 4491 5909 -1656 1439 198 0 34 chr21 5641309 5641572 -29265998 + AluJb SINE Alu 4 257 -55 678 34 112 0 chr21 5641581 5641670 -29265900 + L1MA3 LINE L1 5854 5952 -353 6653 138 27 9 chr21 5641714 5641787 -29265783 + L1MA3 LINE L1 5895 5965 -1759 2084 144 3 0 chr21 5641787 5642085 -29265485 + AluSx SINE Alu 1 299 -13 6653 138 27 9 chr21 5642085 5643808 -29263762 + L1MA3 LINE L1 5965 7724 0 537 185 140 0 chr21 5643789 5643901 -29263669 + L1 LINE L1 4133 4275 -1871 405 0 0 0 chr21 5643901 5643946 -29263624 + (CA)n Simple_repeat Simple_repeat 2 46 0 537 185 140 0 chr21 5643946 5643990 -29263580 + L1 LINE L1 4275 4311 -1835 1948 237 26 22 chr21 5644246 5644710 -29262860 - MLT1C LTR MaLR 0 467 2 37523 37 1 2 chr21 5645321 5651372 -29256198 + L1PA2 LINE L1 1 6172 0 1405 158 56 8 chr21 5651378 5651644 -29255926 + L1MB3 LINE L1 5889 6167 -16 269 105 23 75 chr21 5651651 5651784 -29255786 + (TA)n Simple_repeat Simple_repeat 1 126 0 43 0 0 0 chr21 5651799 5651842 -29255728 + AT_rich Low_complexity Low_complexity 1 43 0 323 303 119 0 chr21 5653121 5653230 -29254340 + Charlie8 DNA MER1_type 155 276 -2141 27 29 0 0 chr21 5653585 5653619 -29253951 + AT_rich Low_complexity Low_complexity 1 34 0 2368 103 0 3 chr21 5653693 5654003 -29253567 - AluSq SINE Alu -4 309 1 1722 140 30 0 chr21 5654234 5654394 -29253176 - L1MA4 LINE L1 -7 6293 6139 1900 107 7 37 chr21 5654394 5654714 -29252856 + AluSx SINE Alu 5 312 0 1722 140 30 0 chr21 5654714 5654853 -29252717 - L1MA4 LINE L1 -161 6139 5985 23 0 0 0 chr21 5655277 5655300 -29252270 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr21 5655695 5655720 -29251850 + (TG)n Simple_repeat Simple_repeat 1 25 0 1129 107 0 6 chr21 5656686 5656845 -29250725 - L1PA13 LINE L1 -6 6157 6000 302 308 58 23 chr21 5657155 5657327 -29250243 - HAL1 LINE L1 -936 1571 1394 3256 119 22 2 chr21 5657327 5657771 -29249799 - MLT2A2 LTR ERVL 0 453 1 20397 77 5 2 chr21 5657771 5660356 -29247214 - HERVL-A2 LTR ERVL 0 5654 3063 3353 121 13 0 chr21 5660370 5660817 -29246753 - MLT2A2 LTR ERVL 0 453 1 2843 101 0 0 chr21 5661380 5661735 -29245835 + THE1A LTR MaLR 1 355 0 12486 102 2 1 chr21 5661735 5663312 -29244258 + THE1A-int LTR MaLR 1 1580 0 2628 81 60 0 chr21 5663312 5663647 -29243923 + THE1A LTR MaLR 1 355 0 734 209 57 0 chr21 5663771 5663929 -29243641 - L1MC3 LINE L1 0 7785 7619 3147 172 18 2 chr21 5663939 5664486 -29243084 - L1MC3 LINE L1 -322 7463 6908 5520 167 26 14 chr21 5665695 5666334 -29241236 - L1PB4 LINE L1 -3 6153 5523 1730 171 3 17 chr21 5666334 5666627 -29240943 - AluJo SINE Alu -21 291 3 5520 167 26 14 chr21 5666627 5667843 -29239727 - L1PB4 LINE L1 -633 5523 4276 1760 227 146 78 chr21 5668077 5668654 -29238916 - MLT1E2 LTR MaLR -8 616 1 3995 218 53 24 chr21 5669819 5670331 -29237239 + L1PBa LINE L1 6 501 -6362 1733 91 56 4 chr21 5670331 5670583 -29236987 + AluY SINE Alu 36 300 -11 3995 218 53 24 chr21 5670583 5671083 -29236487 + L1PBa LINE L1 501 1048 -5815 5996 144 25 13 chr21 5671084 5672195 -29235375 + L1PBa LINE L1 1093 2359 -4504 265 231 0 0 chr21 5672195 5672247 -29235323 + LTR30 LTR ERV1 1 52 -670 1440 98 35 17 chr21 5672247 5672499 -29235071 + LTR12 LTR ERV1 38 2039 -399 285 198 37 25 chr21 5672502 5672583 -29234987 + LTR30 LTR ERV1 561 642 -80 749 110 0 0 chr21 5672586 5672686 -29234884 + LTR12 LTR ERV1 572 671 0 4822 216 17 9 chr21 5672687 5674068 -29233502 + L1PBa LINE L1 2424 3803 -3059 423 119 34 0 chr21 5674068 5674127 -29233443 - AluS SINE Alu -232 81 21 292 211 35 0 chr21 5674158 5674215 -29233355 - MLT1F1 LTR MaLR -332 235 177 21 57 0 0 chr21 5674246 5674281 -29233289 + AT_rich Low_complexity Low_complexity 1 35 0 451 300 86 64 chr21 5674411 5674678 -29232892 - LTR67 LTR ERVL -256 301 29 1618 159 81 4 chr21 5676060 5676331 -29231239 + AluJo SINE Alu 2 293 -19 1774 213 47 63 chr21 5676338 5676366 -29231204 - MLT2B1 LTR ERVL -20 500 473 294 73 0 0 chr21 5676366 5676407 -29231163 + (TG)n Simple_repeat Simple_repeat 2 42 0 1774 213 47 63 chr21 5676407 5676886 -29230684 - MLT2B1 LTR ERVL -47 473 1 1845 219 69 79 chr21 5676931 5677589 -29229981 + MLT1E2 LTR MaLR 1 626 0 647 327 70 43 chr21 5677589 5677951 -29229619 - ERVL LTR ERVL -1278 4486 4102 2881 115 26 28 chr21 5677951 5678378 -29229192 + MSTA LTR MaLR 3 428 0 647 327 70 43 chr21 5678378 5678574 -29228996 - ERVL LTR ERVL -1662 4102 3913 2151 85 61 0 chr21 5678764 5679057 -29228513 - AluSp SINE Alu -2 311 1 783 149 12 38 chr21 5679399 5679661 -29227909 + AluJ SINE Alu 1 312 0 2244 97 3 3 chr21 5679663 5679963 -29227607 + AluY SINE Alu 3 302 -9 292 277 132 57 chr21 5680113 5680272 -29227298 - ERVL LTR ERVL -2549 3105 2935 1503 160 12 20 chr21 5680836 5681080 -29226490 + MLT1D LTR MaLR 1 242 -263 560 180 137 43 chr21 5681076 5681215 -29226355 + MLT1D LTR MaLR 354 505 0 1656 158 0 8 chr21 5681319 5681584 -29225986 + AluJo SINE Alu 22 284 -28 22 0 0 0 chr21 5681584 5681606 -29225964 + AT_rich Low_complexity Low_complexity 1 22 0 2239 92 7 0 chr21 5681865 5682196 -29225374 + AluSp SINE Alu 1 333 0 34 24 0 0 chr21 5682788 5682829 -29224741 + AT_rich Low_complexity Low_complexity 1 41 0 2662 132 0 3 chr21 5683052 5683417 -29224153 - THE1B LTR MaLR 0 364 1 2070 188 28 19 chr21 5683458 5683820 -29223750 + MLT1A1 LTR MaLR 1 365 0 275 261 15 100 chr21 5683901 5683987 -29223583 + MER94 DNA DNA 11 84 -50 2259 103 0 7 chr21 5683987 5684288 -29223282 + AluY SINE Alu 1 299 -12 275 261 15 100 chr21 5684288 5684331 -29223239 + MER94 DNA DNA 84 129 -5 1867 142 3 39 chr21 5684845 5685154 -29222416 + AluSp SINE Alu 1 298 -15 219 242 0 0 chr21 5685685 5685747 -29221823 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 874 219 127 0 chr21 5686614 5686819 -29220751 - MIR SINE MIR -21 241 11 2024 165 105 33 chr21 5686886 5687055 -29220515 + MSTA LTR MaLR 1 156 -272 1841 131 11 0 chr21 5687055 5687330 -29220240 + AluSx SINE Alu 16 293 -19 2024 165 105 33 chr21 5687330 5687559 -29220011 + MSTA LTR MaLR 156 428 0 252 184 0 0 chr21 5687746 5687795 -29219775 + (TA)n Simple_repeat Simple_repeat 1 49 0 229 149 0 0 chr21 5687798 5687845 -29219725 - LTR66 LTR ERVL -397 213 167 1696 154 19 0 chr21 5687901 5688116 -29219454 - AluJo SINE Alu -41 271 1 331 161 0 17 chr21 5688119 5688179 -29219391 - Alu SINE Alu -254 48 1 709 237 17 35 chr21 5688352 5688525 -29219045 - MER45A DNA AcHobo -8 170 1 645 243 14 0 chr21 5688571 5688711 -29218859 + MER34 LTR ERV1 4 145 -397 1991 171 64 9 chr21 5688860 5689206 -29218364 + MLT1A1 LTR MaLR 1 365 0 222 37 0 0 chr21 5690660 5690687 -29216883 + (GAA)n Simple_repeat Simple_repeat 2 28 0 193 114 0 45 chr21 5690784 5690828 -29216742 + (TAA)n Simple_repeat Simple_repeat 1 42 0 19195 79 7 1 chr21 5691287 5693869 -29213701 + L1PA6 LINE L1 1380 3976 -2170 37824 35 1 1 chr21 5693877 5699769 -29207801 + L1PA2 LINE L1 1 6018 -137 351 0 0 0 chr21 5699772 5699811 -29207759 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 11603 65 2 2 chr21 5699811 5701997 -29205573 + L1PA6 LINE L1 3965 6154 0 2175 112 0 3 chr21 5702058 5702353 -29205217 - AluSx SINE Alu -18 294 1 374 237 32 32 chr21 5702637 5702730 -29204840 - MER5A DNA MER1_type -79 110 18 3939 98 2 0 chr21 5702825 5703333 -29204237 - L1PB1 LINE L1 0 6151 5643 2108 253 66 9 chr21 5705456 5705641 -29201929 - MER119 DNA MER1_type -2 581 408 1755 144 17 34 chr21 5705641 5705939 -29201631 - AluJo SINE Alu -19 293 1 2108 253 66 9 chr21 5705939 5705961 -29201609 - MER119 DNA MER1_type -175 408 389 2805 221 5 19 chr21 5705961 5706536 -29201034 - MLT1F1 LTR MaLR 0 567 1 2108 253 66 9 chr21 5706536 5706873 -29200697 - MER119 DNA MER1_type -194 389 5 30 45 0 0 chr21 5707020 5707064 -29200506 + AT_rich Low_complexity Low_complexity 1 44 0 405 243 65 0 chr21 5707393 5707500 -29200070 + HAL1 LINE L1 28 141 -2366 2578 52 7 0 chr21 5708105 5708412 -29199158 - AluY SINE Alu -2 309 1 364 217 76 0 chr21 5708463 5708555 -29199015 - L1MC4 LINE L1 -2 8040 7942 497 191 0 0 chr21 5708634 5708723 -29198847 - L1MC4 LINE L1 -148 7894 7806 2188 99 0 7 chr21 5708890 5709183 -29198387 + AluSc SINE Alu 1 291 -18 646 249 88 80 chr21 5709330 5709346 -29198224 + HAL1 LINE L1 2015 2029 -478 405 0 0 0 chr21 5709346 5709391 -29198179 + (CA)n Simple_repeat Simple_repeat 2 46 0 646 249 88 80 chr21 5709391 5709464 -29198106 + HAL1 LINE L1 2029 2100 -407 2467 253 6 12 chr21 5709464 5709981 -29197589 - LTR40a LTR ERVL -4 515 2 646 249 88 80 chr21 5709981 5710379 -29197191 + HAL1 LINE L1 2100 2507 0 861 163 8 0 chr21 5710386 5710515 -29197055 + FLAM_A SINE Alu 1 130 -3 1935 159 0 13 chr21 5710520 5710654 -29196916 + AluJo SINE Alu 3 137 -175 2111 107 3 58 chr21 5710654 5710982 -29196588 + AluSx SINE Alu 1 310 -2 1935 159 0 13 chr21 5710982 5711161 -29196409 + AluJo SINE Alu 137 312 0 301 314 25 62 chr21 5711811 5712053 -29195517 - L1ME4a LINE L1 -84 6037 5805 2121 110 23 19 chr21 5712074 5712384 -29195186 - AluSx SINE Alu -1 311 1 277 136 0 23 chr21 5713315 5713391 -29194179 - AluSx SINE Alu 0 315 241 1218 130 0 11 chr21 5713391 5713568 -29194002 - AluSx SINE Alu -137 175 1 1906 143 21 7 chr21 5713594 5713881 -29193689 + AluSx SINE Alu 14 304 -8 379 234 48 32 chr21 5713951 5714075 -29193495 + HAL1 LINE L1 829 954 -1553 24 32 0 0 chr21 5714075 5714106 -29193464 + AT_rich Low_complexity Low_complexity 1 31 0 1862 276 71 58 chr21 5714301 5715387 -29192183 + HAL1 LINE L1 1271 2373 -134 772 226 0 8 chr21 5715387 5715520 -29192050 + FLAM_A SINE Alu 1 132 -1 1862 276 71 58 chr21 5715520 5715579 -29191991 + HAL1 LINE L1 2373 2430 -77 744 173 24 4 chr21 5715579 5715828 -29191742 + GA-rich Low_complexity Low_complexity 1 254 0 215 200 0 0 chr21 5715970 5716005 -29191565 + polypurine Low_complexity Low_complexity 3 37 0 535 154 26 0 chr21 5716822 5716900 -29190670 - AluJo SINE Alu -14 298 219 850 188 7 0 chr21 5716896 5717034 -29190536 - AluJo SINE Alu -172 140 2 2114 116 28 0 chr21 5717041 5717325 -29190245 - AluSx SINE Alu -20 292 1 252 295 71 89 chr21 5717483 5717595 -29189975 + MIR SINE MIR 35 144 -64 1644 133 38 44 chr21 5717609 5718045 -29189525 + AluSq SINE Alu 1 434 0 185 272 110 37 chr21 5718624 5718760 -29188810 - MIR3 SINE MIR -5 203 58 2181 128 0 3 chr21 5719054 5719351 -29188219 + AluSx SINE Alu 1 296 -16 331 248 78 47 chr21 5720402 5720531 -29187039 + MIR SINE MIR 121 253 -9 323 316 74 62 chr21 5721499 5721838 -29185732 - LTR16C LTR ERVL -31 460 118 1406 174 23 72 chr21 5722114 5722256 -29185314 + AluJo SINE Alu 1 122 -190 2339 81 3 0 chr21 5722256 5722551 -29185019 + AluSp SINE Alu 2 297 -16 1406 174 23 72 chr21 5722551 5722712 -29184858 + AluJo SINE Alu 122 289 -23 23 78 0 0 chr21 5722957 5723008 -29184562 + AT_rich Low_complexity Low_complexity 1 51 0 400 159 91 23 chr21 5723826 5723914 -29183656 - MLT1H LTR MaLR 0 590 474 183 80 0 0 chr21 5723926 5723951 -29183619 + (GGCTG)n Simple_repeat Simple_repeat 4 28 0 667 259 64 48 chr21 5724031 5724225 -29183345 - MLT1H LTR MaLR -213 336 136 2181 132 54 17 chr21 5724225 5724574 -29182996 - THE1B LTR MaLR -2 362 1 667 259 64 48 chr21 5724574 5724630 -29182940 - MLT1H LTR MaLR -413 136 82 2310 139 39 28 chr21 5724725 5725085 -29182485 + THE1B LTR MaLR 1 364 0 2296 98 10 0 chr21 5725129 5725435 -29182135 + AluSp SINE Alu 1 309 -4 302 273 36 9 chr21 5725766 5725876 -29181694 - MIR SINE MIR -26 236 124 1139 243 69 18 chr21 5725998 5726450 -29181120 + L1ME3A LINE L1 5474 5951 -219 1577 286 36 5 chr21 5726848 5727296 -29180274 - LTR16B LTR ERVL 0 464 3 2694 114 5 8 chr21 5727596 5727972 -29179598 - THE1C LTR MaLR 0 375 1 595 168 101 8 chr21 5728137 5728256 -29179314 + MER1B DNA MER1_type 1 130 -167 1810 89 12 4 chr21 5728255 5728503 -29179067 + MER1B DNA MER1_type 120 329 0 1896 158 20 0 chr21 5729061 5729365 -29178205 - AluSx SINE Alu -2 310 1 2207 122 0 19 chr21 5730753 5731072 -29176498 + AluSq SINE Alu 1 313 0 421 277 43 14 chr21 5731996 5732137 -29175433 - MLT1L LTR MaLR -293 322 178 2306 95 3 0 chr21 5733481 5733776 -29173794 + AluSx SINE Alu 1 296 -16 292 286 0 16 chr21 5734548 5734611 -29172959 + L2 LINE L2 3206 3267 -5 277 231 269 8 chr21 5734615 5734749 -29172821 - MIR SINE MIR -47 215 47 1937 137 3 47 chr21 5735005 5735327 -29172243 - AluJb SINE Alu -4 308 1 1059 107 7 7 chr21 5735486 5735636 -29171934 + AluSq/x SINE Alu 1 150 -163 2423 86 3 0 chr21 5736112 5736415 -29171155 - AluSg SINE Alu -6 304 1 418 217 19 130 chr21 5737921 5738082 -29169488 - LTR67 LTR ERVL -52 505 363 1829 210 47 54 chr21 5738545 5738641 -29168929 + MER119 DNA MER1_type 3 98 -485 2115 127 3 13 chr21 5738641 5738956 -29168614 + AluSx SINE Alu 1 312 0 1829 210 47 54 chr21 5738956 5739374 -29168196 + MER119 DNA MER1_type 98 513 -70 21 0 0 0 chr21 5739613 5739634 -29167936 + AT_rich Low_complexity Low_complexity 1 21 0 1900 117 95 0 chr21 5739812 5740085 -29167485 + AluSx SINE Alu 1 299 -13 1902 175 3 0 chr21 5740463 5740772 -29166798 - AluJb SINE Alu -2 310 1 1097 233 67 74 chr21 5740889 5741253 -29166317 + MLT1E LTR MaLR 193 555 -38 2066 107 0 75 chr21 5741253 5741571 -29165999 - AluSx SINE Alu -16 296 3 1097 233 67 74 chr21 5741571 5741610 -29165960 + MLT1E LTR MaLR 555 593 0 1010 219 63 49 chr21 5741610 5742019 -29165551 + L1MC4 LINE L1 7536 8031 -11 2646 128 0 31 chr21 5742796 5743210 -29164360 + MSTA LTR MaLR 1 401 -27 2285 104 3 0 chr21 5743221 5743530 -29164040 - AluSx SINE Alu -2 310 1 659 146 0 0 chr21 5744182 5744271 -29163299 - AluJ/FLAM SINE Alu -223 89 1 1585 216 116 48 chr21 5744427 5744462 -29163108 - L1MC4 LINE L1 -146 7896 7865 2057 127 0 7 chr21 5744462 5744779 -29162791 + AluSx SINE Alu 1 315 0 1585 216 116 48 chr21 5744779 5745241 -29162329 - L1MC4 LINE L1 -177 7865 7364 571 245 20 20 chr21 5745293 5745421 -29162149 + L1MC3 LINE L1 5698 5828 -1957 2011 119 3 20 chr21 5745421 5745715 -29161855 + AluSx SINE Alu 1 289 -23 571 245 20 20 chr21 5745715 5745737 -29161833 + L1MC3 LINE L1 5827 5848 -1937 829 213 68 29 chr21 5745717 5745924 -29161646 + L1ME1 LINE L1 5880 6094 -72 236 160 0 40 chr21 5745925 5745975 -29161595 + Alu SINE Alu 122 169 -134 1659 127 17 124 chr21 5746037 5746384 -29161186 - AluSx SINE Alu -2 310 1 1626 158 0 119 chr21 5746411 5746765 -29160805 - AluJb SINE Alu 0 312 1 24 0 0 0 chr21 5746781 5746805 -29160765 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 5747332 5747363 -29160207 + AT_rich Low_complexity Low_complexity 1 31 0 2147 83 7 20 chr21 5747363 5747664 -29159906 + AluSc SINE Alu 1 297 -12 477 332 24 10 chr21 5748158 5748366 -29159204 + LTR16C LTR ERVL 209 419 -72 2249 85 3 0 chr21 5748504 5748806 -29158764 + AluSq SINE Alu 1 303 0 1309 94 6 6 chr21 5749158 5749338 -29158232 - AluSg/x SINE Alu -3 307 128 560 152 43 0 chr21 5749393 5749485 -29158085 + U6 snRNA snRNA 12 107 0 1749 99 8 4 chr21 5749485 5749737 -29157833 + L1MA2 LINE L1 6048 6300 -4 183 303 20 61 chr21 5749775 5749874 -29157696 - MIR SINE MIR -150 112 18 698 189 15 15 chr21 5750042 5750241 -29157329 + FLAM_C SINE Alu 1 199 0 408 91 0 15 chr21 5750175 5750417 -29157153 + (GAAA)n Simple_repeat Simple_repeat 3 243 0 912 161 7 0 chr21 5750418 5750561 -29157009 + FRAM SINE Alu 1 140 -36 459 92 0 0 chr21 5750568 5750633 -29156937 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 1977 128 42 78 chr21 5750784 5751117 -29156453 + MLT1B LTR MaLR 21 340 -50 2367 68 14 3 chr21 5751117 5751411 -29156159 + AluSp SINE Alu 2 298 -15 1977 128 42 78 chr21 5751411 5751459 -29156111 + MLT1B LTR MaLR 340 388 -2 23 0 0 0 chr21 5752380 5752403 -29155167 + AT_rich Low_complexity Low_complexity 1 23 0 2480 67 0 10 chr21 5752461 5752775 -29154795 + AluY SINE Alu 1 311 0 2331 102 0 7 chr21 5752808 5753113 -29154457 - AluSq SINE Alu -10 303 1 1389 179 145 36 chr21 5753455 5753902 -29153668 + LTR54B LTR ERV1 2 497 -1 462 219 0 0 chr21 5754015 5754120 -29153450 + GA-rich Low_complexity Low_complexity 1 105 0 2033 122 0 0 chr21 5755207 5755494 -29152076 + AluSq SINE Alu 1 287 -26 892 126 7 44 chr21 5757056 5757191 -29150379 + FLAM_C SINE Alu 1 130 -3 1141 199 6 65 chr21 5757883 5757904 -29149666 - MER33 DNA MER1_type -2269 316 295 2258 108 0 3 chr21 5757904 5758200 -29149370 + AluSx SINE Alu 1 295 -17 1141 199 6 65 chr21 5758200 5758514 -29149056 - MER33 DNA MER1_type -2290 295 1 1085 234 57 36 chr21 5760798 5761358 -29146212 - LTR48B LTR ERV1 0 644 1 447 19 0 0 chr21 5761804 5761856 -29145714 + (TG)n Simple_repeat Simple_repeat 1 52 0 1761 159 0 61 chr21 5761884 5762119 -29145451 - AluJo SINE Alu -1 311 100 2360 77 3 10 chr21 5762119 5762418 -29145152 - AluSg1 SINE Alu -12 297 1 1761 159 0 61 chr21 5762418 5762509 -29145061 - AluJo SINE Alu -212 100 5 972 148 94 20 chr21 5762535 5762738 -29144832 - L1PA16 LINE L1 -2 6164 5947 2553 44 0 0 chr21 5763029 5763323 -29144247 + AluY SINE Alu 1 294 -17 1875 142 7 3 chr21 5763719 5764027 -29143543 - AluJb SINE Alu 0 310 2 288 338 15 7 chr21 5764030 5764166 -29143404 - L1MC/D LINE L1 -1983 5825 5689 2087 140 3 0 chr21 5764168 5764468 -29143102 + AluSx SINE Alu 1 301 -11 257 194 0 28 chr21 5765054 5765126 -29142444 + T-rich Low_complexity Low_complexity 3 72 0 716 236 0 0 chr21 5765129 5765252 -29142318 - FLAM_A SINE Alu -10 123 1 2368 80 3 16 chr21 5765980 5766292 -29141278 - AluY SINE Alu -2 309 2 822 142 55 8 chr21 5766326 5766453 -29141117 + FLAM_C SINE Alu 1 133 0 30 27 0 0 chr21 5766453 5766490 -29141080 + AT_rich Low_complexity Low_complexity 1 37 0 3026 158 34 14 chr21 5767317 5767818 -29139752 - MER41E LTR ERV1 -1 511 1 2046 106 26 29 chr21 5768413 5768724 -29138846 + AluSx SINE Alu 1 310 -2 832 146 0 8 chr21 5768736 5768859 -29138711 + FLAM_C SINE Alu 3 124 -19 264 185 0 0 chr21 5769027 5769081 -29138489 + (TG)n Simple_repeat Simple_repeat 1 54 0 795 161 0 0 chr21 5769081 5769199 -29138371 - FLAM_C SINE Alu -23 120 3 277 218 0 18 chr21 5769204 5769259 -29138311 + MER5B DNA MER1_type 120 173 -5 354 203 0 0 chr21 5770096 5770155 -29137415 + AluJb SINE Alu 52 110 -192 2169 119 0 0 chr21 5770160 5770453 -29137117 - AluSx SINE Alu -16 296 4 207 0 0 0 chr21 5770482 5770505 -29137065 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 247 245 19 0 chr21 5770517 5770570 -29137000 + U7 snRNA snRNA 9 62 -1 256 170 64 0 chr21 5770852 5770899 -29136671 - AluJo SINE Alu -168 134 85 342 0 0 0 chr21 5771360 5771398 -29136172 + (T)n Simple_repeat Simple_repeat 1 38 0 2690 42 0 0 chr21 5771566 5771872 -29135698 + AluY SINE Alu 1 306 -5 493 172 0 11 chr21 5772510 5772597 -29134973 - AluSp/q SINE Alu -13 300 215 607 40 0 0 chr21 5772623 5772697 -29134873 - tRNA-Gly-GGC tRNA tRNA 0 74 1 1786 136 0 42 chr21 5772811 5773121 -29134449 + AluJo SINE Alu 1 297 -15 27 49 0 0 chr21 5773263 5773304 -29134266 + AT_rich Low_complexity Low_complexity 1 41 0 271 333 9 27 chr21 5773537 5773648 -29133922 + L3 LINE CR1 1060 1168 -409 1480 113 0 0 chr21 5773775 5773978 -29133592 + AluSg/x SINE Alu 104 306 -4 2482 57 3 3 chr21 5774071 5774370 -29133200 + AluSp SINE Alu 1 299 -14 222 253 84 24 chr21 5774509 5774592 -29132978 - L2 LINE L2 -427 2887 2800 38 51 0 0 chr21 5774676 5774735 -29132835 + AT_rich Low_complexity Low_complexity 1 59 0 2066 91 32 7 chr21 5774800 5775085 -29132485 - AluSq SINE Alu -19 294 3 2007 102 92 0 chr21 5775085 5775369 -29132201 - AluSx SINE Alu -2 310 1 403 237 0 10 chr21 5775383 5775480 -29132090 + MIR SINE MIR 100 195 -67 343 176 176 69 chr21 5775485 5775517 -29132053 + L2 LINE L2 3201 3228 -85 520 256 131 35 chr21 5775517 5775716 -29131854 - MER20 DNA MER1_type -1 218 1 343 176 176 69 chr21 5775716 5775785 -29131785 + L2 LINE L2 3228 3313 0 1451 175 14 35 chr21 5776162 5776447 -29131123 - MLT2D LTR ERVL 0 414 136 1938 149 0 3 chr21 5776447 5776736 -29130834 + AluJb SINE Alu 1 288 -24 1027 139 6 30 chr21 5776759 5776925 -29130645 + AluSg/x SINE Alu 120 281 -29 1648 139 85 36 chr21 5776948 5777279 -29130291 - THE1C LTR MaLR -28 347 1 598 230 7 15 chr21 5777306 5777441 -29130129 - MLT2D LTR ERVL -270 144 11 1937 157 3 3 chr21 5777441 5777740 -29129830 + AluJb SINE Alu 1 299 -13 906 111 7 49 chr21 5779502 5779646 -29127924 + FLAM_C SINE Alu 6 143 0 859 158 0 0 chr21 5779652 5779772 -29127798 + AluJb SINE Alu 181 300 -12 2011 117 11 11 chr21 5779981 5780309 -29127261 - AluSx SINE Alu 0 328 1 2503 73 0 0 chr21 5780687 5780989 -29126581 + AluY SINE Alu 1 302 -9 2414 96 0 3 chr21 5782031 5782344 -29125226 - AluSx SINE Alu 0 312 1 32 43 0 0 chr21 5782372 5782418 -29125152 + AT_rich Low_complexity Low_complexity 1 46 0 2322 84 3 19 chr21 5782834 5783143 -29124427 + AluSg SINE Alu 1 304 -6 2167 122 3 0 chr21 5783185 5783487 -29124083 + AluSc SINE Alu 1 303 -6 195 42 0 0 chr21 5783536 5783560 -29124010 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2228 114 3 0 chr21 5783562 5783859 -29123711 - AluSx SINE Alu -14 298 1 237 182 0 0 chr21 5784053 5784097 -29123473 - L1MC4 LINE L1 -1338 6704 6661 1249 192 3 78 chr21 5784115 5784437 -29123133 - AluJo SINE Alu -9 303 6 2240 89 0 7 chr21 5784597 5784916 -29122654 - AluSg SINE Alu 0 319 3 627 212 79 18 chr21 5784917 5785082 -29122488 + MER5B DNA MER1_type 4 178 0 28 48 0 0 chr21 5785128 5785170 -29122400 + AT_rich Low_complexity Low_complexity 1 42 0 287 232 0 0 chr21 5785922 5785978 -29121592 - MIR3 SINE MIR -21 187 132 1345 152 134 32 chr21 5786198 5786362 -29121208 - AluJo SINE Alu 0 312 166 2021 155 0 0 chr21 5786362 5786665 -29120905 - AluJb SINE Alu -9 303 1 1345 152 134 32 chr21 5786665 5786783 -29120787 - AluJo SINE Alu -146 166 1 2454 43 17 0 chr21 5787039 5787338 -29120232 - AluY SINE Alu -2 309 6 1028 124 47 42 chr21 5787383 5787576 -29119994 + L1MB3 LINE L1 5975 6168 -15 225 0 0 0 chr21 5787576 5787601 -29119969 + (TG)n Simple_repeat Simple_repeat 2 26 0 1065 187 5 48 chr21 5787601 5787810 -29119760 - AluJo SINE Alu -21 291 92 2124 144 0 3 chr21 5787892 5788205 -29119365 - AluJo SINE Alu 0 312 1 2164 107 19 7 chr21 5788244 5788553 -29119017 - AluSp SINE Alu 0 313 1 2231 105 7 0 chr21 5788580 5788875 -29118695 + AluSx SINE Alu 1 297 -15 2173 102 0 11 chr21 5789122 5789436 -29118134 - AluSx SINE Alu 0 311 1 240 243 29 48 chr21 5790751 5790854 -29116716 + MIR SINE MIR 138 238 -24 2473 76 0 0 chr21 5791045 5791349 -29116221 + AluSg SINE Alu 1 304 -6 2426 165 24 7 chr21 5791617 5792036 -29115534 + MSTB LTR MaLR 1 426 0 509 240 139 51 chr21 5793138 5793503 -29114067 + HAL1b LINE L1 66 472 -876 1893 226 53 68 chr21 5793503 5793668 -29113902 + MLT1F LTR MaLR 3 169 -373 2210 84 27 10 chr21 5793668 5793965 -29113605 + AluSp SINE Alu 1 302 -11 1893 226 53 68 chr21 5793965 5794347 -29113223 + MLT1F LTR MaLR 169 542 0 509 240 139 51 chr21 5794347 5794390 -29113180 + HAL1b LINE L1 472 510 -838 238 214 0 0 chr21 5794398 5794440 -29113130 + HAL1b LINE L1 490 531 -817 2194 109 0 3 chr21 5794479 5794791 -29112779 + AluSq SINE Alu 2 312 0 734 250 17 6 chr21 5794814 5794990 -29112580 + AluJb SINE Alu 126 303 -9 558 245 65 82 chr21 5794991 5795407 -29112163 + HAL1b LINE L1 611 1019 -329 2528 63 0 0 chr21 5795418 5795717 -29111853 - AluY SINE Alu -12 299 1 2345 103 3 0 chr21 5795799 5796111 -29111459 - AluSp SINE Alu 0 313 1 1956 153 0 0 chr21 5796180 5796508 -29111062 - AluJo SINE Alu 0 330 3 551 297 57 19 chr21 5796512 5796721 -29110849 - L1ME LINE L1 -308 5813 5597 558 250 97 10 chr21 5796756 5796952 -29110618 - MIR SINE MIR -4 258 46 391 290 110 0 chr21 5796996 5797141 -29110429 + MIR SINE MIR 37 197 -65 2412 86 3 0 chr21 5797141 5797444 -29110126 + AluSg SINE Alu 2 305 -5 750 164 0 8 chr21 5798188 5798339 -29109231 + FLAM_C SINE Alu 1 133 0 1990 215 121 56 chr21 5798492 5798536 -29109034 - Zaphod DNA AcHobo -3196 827 787 2307 80 3 3 chr21 5798536 5798847 -29108723 - AluSp SINE Alu 0 311 1 1990 215 121 56 chr21 5798847 5799466 -29108104 - Zaphod DNA AcHobo -3236 787 103 2202 130 3 0 chr21 5799466 5799773 -29107797 - AluSx SINE Alu -4 308 1 1990 215 121 56 chr21 5799773 5799878 -29107692 - Zaphod DNA AcHobo -3920 103 6 2208 95 0 3 chr21 5800110 5800444 -29107126 + AluSg SINE Alu 1 333 0 1966 155 0 0 chr21 5801148 5801538 -29106032 - AluSx SINE Alu 0 390 1 1400 149 73 45 chr21 5801690 5801978 -29105592 + AluJo SINE Alu 17 312 0 237 33 0 0 chr21 5801978 5802008 -29105562 + (TA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr21 5802060 5802084 -29105486 + AT_rich Low_complexity Low_complexity 1 24 0 500 281 90 4 chr21 5802097 5802364 -29105206 - L1ME4a LINE L1 -2 6119 5830 2442 83 7 0 chr21 5802373 5802675 -29104895 - AluSp SINE Alu -8 305 2 915 220 6 0 chr21 5802679 5802847 -29104723 - FAM SINE Alu -6 169 1 2457 62 0 0 chr21 5802856 5803188 -29104382 - AluY SINE Alu 0 311 1 2628 55 0 3 chr21 5803641 5803953 -29103617 - AluY SINE Alu 0 311 1 1492 108 0 19 chr21 5803999 5804211 -29103359 - AluSx SINE Alu -2 308 101 2157 106 27 0 chr21 5804211 5804504 -29103066 + AluSq SINE Alu 1 301 -12 2154 101 7 19 chr21 5804506 5804813 -29102757 + AluSx SINE Alu 1 303 -9 894 95 0 0 chr21 5804813 5804929 -29102641 - AluSx SINE Alu -197 116 1 330 229 72 0 chr21 5805152 5805235 -29102335 + L1ME3A LINE L1 6071 6159 -11 378 0 0 0 chr21 5805270 5805312 -29102258 + (TG)n Simple_repeat Simple_repeat 2 43 0 186 43 0 0 chr21 5805459 5805482 -29102088 + (CA)n Simple_repeat Simple_repeat 2 24 0 32 26 0 0 chr21 5806887 5806926 -29100644 + AT_rich Low_complexity Low_complexity 1 39 0 399 227 67 25 chr21 5807659 5807778 -29099792 + MER96B DNA MER1_type? 1 124 -293 212 57 0 29 chr21 5807911 5807946 -29099624 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2035 112 3 18 chr21 5807948 5808233 -29099337 - AluSx SINE Alu -31 281 1 3917 77 28 9 chr21 5808258 5808792 -29098778 - L1PA10 LINE L1 -9 6159 5616 2125 121 3 3 chr21 5808797 5809095 -29098475 - AluSg SINE Alu -12 298 1 202 250 138 0 chr21 5809297 5809377 -29098193 + MIR SINE MIR 171 261 -1 939 257 32 8 chr21 5809624 5809877 -29097693 + LTR16B LTR ERVL 204 462 -2 206 31 0 31 chr21 5810175 5810207 -29097363 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 862 144 0 27 chr21 5811057 5811203 -29096367 - FLAM_C SINE Alu -1 142 1 2446 154 31 19 chr21 5811626 5812047 -29095523 - MSTB LTR MaLR 0 426 1 1854 177 0 0 chr21 5812181 5812475 -29095095 + AluJb SINE Alu 1 294 -18 1003 304 77 17 chr21 5812629 5813031 -29094539 + LTR16C LTR ERVL 1 426 -65 1314 112 52 4 chr21 5814446 5814679 -29092891 - L1MA4 LINE L1 -14 6286 6043 6821 23 0 0 chr21 5815534 5816308 -29091262 - L1PA3 LINE L1 0 6155 5382 202 338 159 0 chr21 5816582 5816789 -29090781 + L2 LINE L2 2301 2540 -774 2137 105 42 0 chr21 5817599 5817885 -29089685 + AluSg SINE Alu 3 300 -10 634 192 0 25 chr21 5817892 5818012 -29089558 + FLAM_C SINE Alu 1 117 -16 392 258 40 71 chr21 5818061 5818259 -29089311 - L2 LINE L2 0 3313 3122 24 0 0 0 chr21 5818292 5818316 -29089254 + AT_rich Low_complexity Low_complexity 1 24 0 243 307 79 0 chr21 5818740 5818854 -29088716 - L2 LINE L2 -217 3055 2933 2409 93 3 0 chr21 5819927 5820229 -29087341 - AluSx SINE Alu -7 305 3 512 194 12 2 chr21 5820320 5820502 -29087068 - ORSL DNA AcHobo -61 214 1 2020 111 14 4 chr21 5820663 5820967 -29086603 + AluSq SINE Alu 1 307 0 1851 107 114 0 chr21 5821102 5821364 -29086206 + AluSx SINE Alu 1 292 -20 740 97 18 0 chr21 5821365 5821479 -29086091 + LTR9B LTR ERV1 445 560 -84 492 330 36 39 chr21 5821487 5821660 -29085910 + L1MEd LINE L1 466 639 -5480 2223 97 7 0 chr21 5821660 5821960 -29085610 + AluSq SINE Alu 1 302 -11 492 330 36 39 chr21 5821960 5822095 -29085475 + L1MEd LINE L1 639 773 -5346 670 174 0 90 chr21 5822095 5822171 -29085399 + FLAM_A SINE Alu 1 82 -229 2052 136 7 0 chr21 5822171 5822458 -29085112 - AluSp SINE Alu -24 289 1 670 174 0 90 chr21 5822458 5822512 -29085058 + FLAM_A SINE Alu 82 120 -191 198 0 0 0 chr21 5822512 5822534 -29085036 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 670 174 0 90 chr21 5822534 5822546 -29085024 + FLAM_A SINE Alu 120 131 -180 2256 128 0 3 chr21 5822548 5822861 -29084709 + AluSx SINE Alu 1 312 0 569 252 70 45 chr21 5822861 5823301 -29084269 + L1MEd LINE L1 755 1205 -4914 2174 118 10 0 chr21 5823366 5823662 -29083908 + AluSq SINE Alu 1 299 -14 4866 117 34 14 chr21 5823829 5824150 -29083420 + MER4E LTR ERV1 1 314 -465 2153 93 3 26 chr21 5824150 5824463 -29083107 + AluSc SINE Alu 1 306 -3 2335 63 0 0 chr21 5824463 5824748 -29082822 - AluSx SINE Alu -27 285 1 4866 117 34 14 chr21 5824748 5825188 -29082382 + MER4E LTR ERV1 313 778 -1 335 291 89 48 chr21 5825389 5825747 -29081823 + HAL1 LINE L1 1 373 -2134 2222 97 3 3 chr21 5825750 5826039 -29081531 + AluSc SINE Alu 1 289 -20 2317 85 24 0 chr21 5826150 5826445 -29081125 - AluSp SINE Alu -10 303 2 2126 104 20 3 chr21 5826532 5826829 -29080741 + AluSx SINE Alu 1 302 -10 2098 104 7 0 chr21 5827517 5827797 -29079773 + AluSx SINE Alu 1 282 -30 285 92 15 31 chr21 5828124 5828189 -29079381 + (TCC)n Simple_repeat Simple_repeat 3 66 0 218 189 0 19 chr21 5828247 5828300 -29079270 + CT-rich Low_complexity Low_complexity 3 54 0 1008 108 12 30 chr21 5828429 5828596 -29078974 - AluJo SINE Alu -117 195 32 1641 65 0 0 chr21 5828596 5828795 -29078775 + AluSg/x SINE Alu 72 270 -40 216 86 0 0 chr21 5829172 5829207 -29078363 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2517 41 3 3 chr21 5829209 5829504 -29078066 - AluY SINE Alu -16 295 1 251 281 0 16 chr21 5829504 5829568 -29078002 + MER5B DNA MER1_type 114 176 -2 342 264 23 0 chr21 5829818 5829905 -29077665 - MIR SINE MIR -28 234 146 261 88 0 0 chr21 5830167 5830201 -29077369 - FRAM/FAM SINE Alu -120 55 22 2134 98 35 0 chr21 5832475 5832760 -29074810 - AluSp SINE Alu -17 296 2 1391 170 33 65 chr21 5832993 5833299 -29074271 + AluJb SINE Alu 1 296 -16 2370 60 20 3 chr21 5833367 5833666 -29073904 + AluY SINE Alu 1 304 -7 223 135 0 39 chr21 5833863 5833915 -29073655 + (TAG)n Simple_repeat Simple_repeat 1 50 0 517 272 19 25 chr21 5833926 5834088 -29073482 - MIR SINE MIR -18 244 84 1327 140 159 15 chr21 5834524 5834795 -29072775 + L1MA8 LINE L1 5982 6291 0 21 36 0 0 chr21 5836235 5836263 -29071307 + AT_rich Low_complexity Low_complexity 1 28 0 213 328 84 25 chr21 5837037 5837156 -29070414 + L2 LINE L2 3146 3271 -1 1655 92 0 0 chr21 5837598 5837804 -29069766 + AluSg/x SINE Alu 83 288 -22 267 103 0 0 chr21 5837814 5837853 -29069717 + (CA)n Simple_repeat Simple_repeat 2 40 0 206 295 21 74 chr21 5837863 5837958 -29069612 + L2 LINE L2 2236 2325 -989 219 219 41 68 chr21 5838221 5838294 -29069276 - MER5A DNA MER1_type -86 103 33 329 359 105 11 chr21 5838655 5838931 -29068639 - L2 LINE L2 -862 2452 2151 2222 99 0 0 chr21 5839156 5839460 -29068110 - AluSx SINE Alu 0 304 1 492 180 57 41 chr21 5839844 5839966 -29067604 - FLAM_A SINE Alu -1 141 18 2395 90 3 0 chr21 5839975 5840285 -29067285 - AluSp SINE Alu -2 311 1 243 361 34 38 chr21 5840285 5840548 -29067022 + L2 LINE L2 1754 2015 -1299 187 218 55 0 chr21 5841153 5841208 -29066362 - L2 LINE L2 -1637 1677 1620 44 20 0 0 chr21 5841496 5841547 -29066023 + AT_rich Low_complexity Low_complexity 1 51 0 2183 118 10 0 chr21 5841688 5841866 -29065704 - AluSx SINE Alu -4 308 124 330 26 0 0 chr21 5841866 5841905 -29065665 + (TG)n Simple_repeat Simple_repeat 2 40 0 2183 118 10 0 chr21 5841905 5842031 -29065539 - AluSx SINE Alu -188 124 1 2283 96 0 46 chr21 5842116 5842440 -29065130 + AluSx SINE Alu 1 309 -3 1824 125 26 72 chr21 5842450 5842754 -29064816 + AluJo SINE Alu 1 290 -22 1184 177 138 0 chr21 5843705 5843988 -29063582 - MER33 DNA MER1_type 0 324 3 22 0 0 0 chr21 5844318 5844340 -29063230 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 5844669 5844690 -29062880 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 689 125 48 0 chr21 5844981 5845085 -29062485 - HY1 scRNA scRNA -3 109 1 410 63 0 48 chr21 5845621 5845706 -29061864 - Alu SINE Alu 0 309 241 2354 97 0 3 chr21 5845899 5846210 -29061360 - AluY SINE Alu 0 311 2 2323 69 7 7 chr21 5846255 5846545 -29061025 - AluSp SINE Alu -23 290 1 2362 82 20 0 chr21 5846864 5847168 -29060402 - AluSg SINE Alu 0 310 1 2075 141 0 0 chr21 5847168 5847458 -29060112 - AluSx SINE Alu -21 291 1 1049 231 104 92 chr21 5847641 5847772 -29059798 - L1ME2 LINE L1 -48 6116 5988 2147 97 0 55 chr21 5847772 5848102 -29059468 - AluSx SINE Alu 0 312 1 1049 231 104 92 chr21 5848102 5848369 -29059201 - L1ME2 LINE L1 -176 5988 5726 2209 123 0 0 chr21 5848369 5848670 -29058900 + AluSx SINE Alu 1 301 -11 1049 231 104 92 chr21 5848670 5848855 -29058715 - L1ME2 LINE L1 -438 5726 5520 2277 113 0 3 chr21 5848855 5849165 -29058405 + AluSg SINE Alu 1 309 -1 1049 231 104 92 chr21 5849165 5849260 -29058310 - L1ME2 LINE L1 -644 5520 5428 506 226 113 0 chr21 5849617 5849732 -29057838 - FLAM_C SINE Alu -13 130 3 1322 179 48 55 chr21 5849762 5850053 -29057517 - AluJo SINE Alu -6 306 18 229 322 11 11 chr21 5850347 5850437 -29057133 + L2 LINE L2 1859 1948 -1366 450 260 98 54 chr21 5850570 5850774 -29056796 - MIR SINE MIR -2 260 48 507 274 6 32 chr21 5851385 5851542 -29056028 + MIR SINE MIR 110 262 0 537 129 0 0 chr21 5851845 5851938 -29055632 + (TA)n Simple_repeat Simple_repeat 1 93 0 2176 92 37 0 chr21 5851938 5852232 -29055338 - AluSg SINE Alu -5 305 1 2128 123 13 0 chr21 5852618 5852919 -29054651 - AluSx SINE Alu -7 305 1 1029 186 11 5 chr21 5852979 5853167 -29054403 - AluJb SINE Alu -26 286 98 807 146 0 42 chr21 5853184 5853328 -29054242 - AluJo SINE Alu -162 150 13 1828 168 0 3 chr21 5853562 5853859 -29053711 + AluJo SINE Alu 1 296 -16 182 226 16 48 chr21 5854518 5854580 -29052990 - L2 LINE L2 -188 3084 3025 2251 113 0 3 chr21 5854594 5854895 -29052675 - AluSx SINE Alu -12 300 1 232 287 75 43 chr21 5855551 5855645 -29051925 - L2 LINE L2 -5 3267 3171 2178 98 7 3 chr21 5855840 5856136 -29051434 - AluY SINE Alu -13 298 2 296 308 136 45 chr21 5856187 5856361 -29051209 - L2 LINE L2 -422 2892 2735 1742 156 3 41 chr21 5856361 5856675 -29050895 + AluJo SINE Alu 1 302 -10 296 308 136 45 chr21 5856675 5856831 -29050739 - L2 LINE L2 -579 2735 2532 1300 217 52 37 chr21 5857754 5858137 -29049433 - MLT1A2 LTR MaLR 0 390 11 21 36 0 0 chr21 5858159 5858187 -29049383 + AT_rich Low_complexity Low_complexity 1 28 0 258 177 25 51 chr21 5858456 5858535 -29049035 - L1MC/D LINE L1 -2052 5756 5680 28 0 0 0 chr21 5858739 5858767 -29048803 + AT_rich Low_complexity Low_complexity 1 28 0 2393 139 62 58 chr21 5858791 5859108 -29048462 - L1MC1 LINE L1 0 6333 6012 2387 57 0 20 chr21 5859108 5859405 -29048165 + AluY SINE Alu 1 291 -20 2393 139 62 58 chr21 5859405 5859589 -29047981 - L1MC1 LINE L1 -321 6012 5830 1339 180 105 24 chr21 5859556 5859889 -29047681 - L1MC4a LINE L1 -368 7440 7081 966 120 0 8 chr21 5861718 5861851 -29045719 + FLAM_C SINE Alu 1 132 -1 365 250 73 0 chr21 5862239 5862335 -29045235 - MLT1H LTR MaLR -15 534 432 363 230 93 22 chr21 5862430 5862569 -29045001 - MLT1H LTR MaLR -286 263 115 225 0 0 0 chr21 5862910 5862935 -29044635 + (T)n Simple_repeat Simple_repeat 1 25 0 1471 106 0 34 chr21 5863268 5863476 -29044094 - AluSg/x SINE Alu -18 292 92 2200 131 3 0 chr21 5863610 5863916 -29043654 - AluSq SINE Alu -6 307 1 2387 84 202 6 chr21 5864175 5864532 -29043038 - MSTA LTR MaLR -1 427 1 21 0 0 0 chr21 5865588 5865609 -29041961 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 5865889 5865923 -29041647 + AT_rich Low_complexity Low_complexity 1 34 0 275 154 220 22 chr21 5867037 5867128 -29040442 - MIR SINE MIR -77 131 23 213 233 68 117 chr21 5867088 5867251 -29040319 + MIR SINE MIR 50 204 -58 2192 102 10 0 chr21 5867912 5868205 -29039365 + AluSg SINE Alu 1 296 -14 1808 141 25 0 chr21 5868955 5869258 -29038312 + AluSx SINE Alu 1 310 0 31 0 0 0 chr21 5870739 5870770 -29036800 + AT_rich Low_complexity Low_complexity 1 31 0 2022 123 0 0 chr21 5870770 5871039 -29036531 - AluSx SINE Alu -22 290 22 2159 118 13 0 chr21 5871449 5871754 -29035816 - AluY SINE Alu -2 309 1 183 309 86 0 chr21 5872855 5872936 -29034634 - L2 LINE L2 -357 2915 2828 1202 196 51 18 chr21 5873206 5873481 -29034089 - L1MD3 LINE L1 -11 7984 7701 962 205 65 5 chr21 5873479 5873694 -29033876 - L1MC4a LINE L1 -462 7346 7119 342 211 83 42 chr21 5874742 5874881 -29032689 + L1ME2 LINE L1 5561 5721 -462 365 261 43 9 chr21 5874970 5875085 -29032485 + LTR65 LTR ERV1 1 119 -550 346 174 93 23 chr21 5875399 5875485 -29032085 + L1ME2 LINE L1 5710 5801 -365 591 208 84 59 chr21 5875493 5875695 -29031875 + L1ME2 LINE L1 5833 6039 -125 25 31 0 0 chr21 5875919 5875951 -29031619 + AT_rich Low_complexity Low_complexity 1 32 0 1506 168 4 19 chr21 5875978 5876246 -29031324 - AluJo SINE Alu -25 287 24 1530 168 42 42 chr21 5877041 5877326 -29030244 - AluJb SINE Alu -17 285 1 1756 153 29 19 chr21 5877498 5877806 -29029764 - AluJb SINE Alu 0 312 2 1644 144 47 7 chr21 5879862 5880140 -29027430 - Tigger1 DNA MER2_type -52 2366 2078 1513 156 0 8 chr21 5880155 5880392 -29027178 - AluJb SINE Alu -10 302 68 3876 145 14 6 chr21 5880392 5881025 -29026545 - Tigger1 DNA MER2_type -1314 1104 467 446 197 0 0 chr21 5881032 5881108 -29026462 + FRAM SINE Alu 55 130 -46 2347 153 38 26 chr21 5881130 5881497 -29026073 - Tigger1 DNA MER2_type -1935 483 109 2541 63 0 0 chr21 5881497 5881799 -29025771 + AluY SINE Alu 1 302 -9 2347 153 38 26 chr21 5881799 5881855 -29025715 - Tigger1 DNA MER2_type -2309 109 55 1556 168 78 48 chr21 5881969 5882048 -29025522 + MER2 DNA MER2_type 2 77 -267 809 97 89 32 chr21 5882048 5882172 -29025398 + FLAM_C SINE Alu 1 131 -2 1556 168 78 48 chr21 5882172 5882425 -29025145 + MER2 DNA MER2_type 77 344 0 28 71 0 0 chr21 5882517 5882573 -29024997 + AT_rich Low_complexity Low_complexity 1 56 0 2190 110 0 0 chr21 5882566 5882856 -29024714 - AluSx SINE Alu -6 306 17 288 0 0 0 chr21 5883120 5883152 -29024418 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr21 5883661 5883682 -29023888 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr21 5884784 5884814 -29022756 + (A)n Simple_repeat Simple_repeat 1 30 0 32 57 0 0 chr21 5885527 5885580 -29021990 + AT_rich Low_complexity Low_complexity 1 53 0 2529 60 0 0 chr21 5885963 5886265 -29021305 - AluY SINE Alu -9 302 1 840 145 15 0 chr21 5886397 5886528 -29021042 - FLAM_C SINE Alu 0 133 1 188 67 33 0 chr21 5887197 5887227 -29020343 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr21 5887527 5887557 -29020013 + AT_rich Low_complexity Low_complexity 1 30 0 1147 225 7 33 chr21 5888262 5888533 -29019037 - MLT1A1 LTR MaLR -75 290 27 1126 133 8 112 chr21 5888717 5888958 -29018612 - MER20 DNA MER1_type -1 218 3 252 192 141 13 chr21 5889051 5889129 -29018441 + MIR SINE MIR 98 185 -77 2102 102 3 36 chr21 5889917 5890221 -29017349 + AluSx SINE Alu 1 294 -18 1030 192 81 119 chr21 5890818 5891203 -29016367 - MLT1B LTR MaLR -20 370 1 2119 107 21 0 chr21 5891464 5891754 -29015816 + AluSx SINE Alu 1 296 -16 267 88 0 0 chr21 5891848 5891882 -29015688 - U2 snRNA snRNA -154 34 1 485 358 78 12 chr21 5892277 5892612 -29014958 - L2 LINE L2 -862 2452 2096 486 269 69 6 chr21 5892585 5892745 -29014825 - L2 LINE L2 -935 2379 2210 504 48 0 0 chr21 5892826 5892889 -29014681 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1681 146 18 4 chr21 5893008 5893315 -29014255 - AluJo SINE Alu 0 314 4 2193 76 0 11 chr21 5893330 5893605 -29013965 - AluY SINE Alu -14 297 26 2487 77 0 0 chr21 5893643 5893942 -29013628 + AluSx SINE Alu 1 299 -13 574 269 86 51 chr21 5894099 5894333 -29013237 + MIR SINE MIR 19 260 -2 312 281 62 23 chr21 5894389 5894517 -29013053 - MER94 DNA DNA 0 134 2 617 149 37 0 chr21 5894636 5894743 -29012827 + HY1 scRNA scRNA 2 112 0 427 103 0 0 chr21 5894944 5895002 -29012568 + Alu SINE Alu 238 295 -17 252 0 0 0 chr21 5895450 5895478 -29012092 + (T)n Simple_repeat Simple_repeat 1 28 0 3021 147 60 30 chr21 5895583 5896182 -29011388 - L1MB1 LINE L1 -109 6059 5443 192 191 95 0 chr21 5896212 5896275 -29011295 - L2 LINE L2 -1122 2192 2124 1868 105 54 11 chr21 5896392 5896669 -29010901 + AluJb SINE Alu 1 289 -23 2345 98 0 0 chr21 5897114 5897421 -29010149 - AluY SINE Alu -4 307 1 773 194 8 0 chr21 5897830 5897959 -29009611 - FLAM_C SINE Alu -13 130 1 26 0 0 0 chr21 5898010 5898036 -29009534 + AT_rich Low_complexity Low_complexity 1 26 0 1650 158 35 3 chr21 5898174 5898458 -29009112 + AluJb SINE Alu 1 293 -19 1783 177 0 0 chr21 5898596 5898878 -29008692 - AluJb SINE Alu -20 292 11 520 311 6 0 chr21 5898985 5899162 -29008408 - L1MC/D LINE L1 -1999 5809 5632 1785 128 13 27 chr21 5899401 5899699 -29007871 + AluJo SINE Alu 3 296 -16 284 0 0 27 chr21 5899758 5899795 -29007775 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 951 79 0 29 chr21 5899796 5899935 -29007635 - AluSq SINE Alu -32 281 147 1049 104 0 7 chr21 5900003 5900147 -29007423 - AluSq SINE Alu -167 146 4 21 0 0 0 chr21 5900157 5900178 -29007392 + AT_rich Low_complexity Low_complexity 1 21 0 263 180 180 0 chr21 5901971 5902032 -29005538 + MIR SINE MIR 3 74 -188 285 263 0 0 chr21 5902070 5902146 -29005424 + MIR SINE MIR 185 260 -2 2224 84 24 3 chr21 5902387 5902685 -29004885 + AluSg SINE Alu 1 304 -6 2358 62 0 7 chr21 5903365 5903653 -29003917 - AluSc SINE Alu -21 288 3 341 115 51 0 chr21 5904195 5904273 -29003297 + (TA)n Simple_repeat Simple_repeat 1 82 0 736 185 0 0 chr21 5904307 5904426 -29003144 - FLAM_C SINE Alu -12 131 13 8807 31 7 1 chr21 5904576 5906411 -29001159 - L1PA4 LINE L1 -1 6154 4315 400 257 32 73 chr21 5907441 5907659 -28999911 - L1ME LINE L1 -302 5819 5611 26 0 0 0 chr21 5907896 5907922 -28999648 + AT_rich Low_complexity Low_complexity 1 26 0 303 317 113 7 chr21 5908994 5909136 -28998434 + MIR SINE MIR 24 180 -82 25 0 0 0 chr21 5909159 5909184 -28998386 + AT_rich Low_complexity Low_complexity 1 25 0 814 124 8 0 chr21 5910066 5910187 -28997383 + MER2 DNA MER2_type 2 123 -221 26 30 0 0 chr21 5910218 5910251 -28997319 + AT_rich Low_complexity Low_complexity 1 33 0 253 238 70 128 chr21 5912481 5912536 -28995034 + MER5A DNA MER1_type 1 58 -125 2312 83 13 0 chr21 5912536 5912850 -28994720 + L1PA14 LINE L1 5844 6161 0 253 238 70 128 chr21 5912850 5912966 -28994604 + MER5A DNA MER1_type 58 167 -16 22 0 0 0 chr21 5913138 5913160 -28994410 + AT_rich Low_complexity Low_complexity 1 22 0 868 245 82 49 chr21 5913352 5913865 -28993705 - L1MC4a LINE L1 -456 5714 5396 1949 219 52 41 chr21 5913946 5914582 -28992988 - L1MC4a LINE L1 -818 5328 4686 376 280 16 24 chr21 5914584 5914709 -28992861 - L1MC4a LINE L1 -1504 4642 4519 276 30 0 0 chr21 5915464 5915497 -28992073 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr21 5916029 5916059 -28991511 + AT_rich Low_complexity Low_complexity 1 30 0 1662 170 7 17 chr21 5917019 5917308 -28990262 - AluJb SINE Alu -17 295 10 2355 89 0 10 chr21 5917313 5917617 -28989953 - AluSx SINE Alu -11 301 1 849 173 0 0 chr21 5918376 5918509 -28989061 + AluJo SINE Alu 1 133 -169 2505 57 0 3 chr21 5918719 5919015 -28988555 + AluSg SINE Alu 1 295 -15 424 248 14 71 chr21 5919021 5919162 -28988408 + MIR3 SINE MIR 28 160 -48 807 237 6 6 chr21 5919214 5919391 -28988179 + AluJo SINE Alu 136 312 0 284 309 49 0 chr21 5921541 5921664 -28985906 + L2 LINE L2 2932 3060 -212 2089 96 10 14 chr21 5921999 5922292 -28985278 + AluSq SINE Alu 1 292 -21 186 344 104 21 chr21 5923661 5923757 -28983813 + MIR SINE MIR 38 141 -67 768 285 50 0 chr21 5923937 5924158 -28983412 - MIR SINE MIR 0 262 31 505 283 66 0 chr21 5924593 5924791 -28982779 - L1ME LINE L1 -348 5773 5563 1537 186 13 36 chr21 5925922 5926223 -28981347 + AluJo SINE Alu 1 294 -18 1425 167 51 19 chr21 5927404 5927715 -28979855 + L1MB8 LINE L1 5546 5866 -312 2335 167 25 15 chr21 5927715 5928179 -28979391 + L1MB8 LINE L1 5684 6162 -16 301 239 124 90 chr21 5930346 5930580 -28976990 + L1M2 LINE L1 780 1021 -5828 21 0 0 0 chr21 5931685 5931706 -28975864 + AT_rich Low_complexity Low_complexity 1 21 0 1799 185 3 0 chr21 5932299 5932596 -28974974 + AluJb SINE Alu 1 298 -14 1860 162 53 34 chr21 5932843 5933201 -28974369 + MLT1A1 LTR MaLR 1 365 0 805 104 27 15 chr21 5933226 5933442 -28974128 - Tigger7 DNA MER2_type 0 2487 2232 2220 110 3 10 chr21 5933806 5934114 -28973456 + AluSx SINE Alu 1 306 -6 1972 86 0 0 chr21 5934173 5934418 -28973152 - AluY SINE Alu -12 299 55 213 39 0 0 chr21 5935135 5935161 -28972409 + (TTG)n Simple_repeat Simple_repeat 2 27 0 291 0 0 0 chr21 5935238 5935269 -28972301 - U6 snRNA snRNA -76 31 1 3732 127 30 2 chr21 5935329 5935905 -28971665 - Tigger1 DNA MER2_type -2 2416 1825 678 179 119 8 chr21 5935906 5936040 -28971530 + FRAM SINE Alu 1 147 -29 4954 119 3 12 chr21 5936040 5936362 -28971208 - Tigger1 DNA MER2_type -624 1794 1470 2171 123 3 19 chr21 5936362 5936672 -28970898 - AluSg SINE Alu -5 305 1 4954 119 3 12 chr21 5936672 5937074 -28970496 - Tigger1 DNA MER2_type -948 1470 1077 539 237 0 0 chr21 5937076 5937169 -28970401 + AluS SINE Alu 2 94 -219 1277 127 0 135 chr21 5937181 5937448 -28970122 + AluSg SINE Alu 64 294 -16 6903 131 20 8 chr21 5937451 5938524 -28969046 - Tigger1 DNA MER2_type -1330 1088 3 247 170 43 0 chr21 5938586 5938633 -28968937 - MLT2C2 LTR ERVL -2 513 465 23 0 0 0 chr21 5938634 5938657 -28968913 + AT_rich Low_complexity Low_complexity 1 23 0 1682 185 177 0 chr21 5938673 5939024 -28968546 - MLT2C2 LTR ERVL -51 413 1 1323 211 56 38 chr21 5939356 5939697 -28967873 + MLT1A1 LTR MaLR 19 365 0 256 108 0 0 chr21 5940835 5940872 -28966698 - AluJb SINE Alu -9 293 257 1333 151 0 10 chr21 5940873 5941079 -28966491 - AluJb SINE Alu -108 204 1 1324 287 57 55 chr21 5941314 5942053 -28965517 + L2 LINE L2 2153 2892 -422 1664 211 64 103 chr21 5942073 5942600 -28964970 - MLT1E2 LTR MaLR -1 625 1 532 257 129 40 chr21 5942702 5942974 -28964596 + L2 LINE L2 3010 3305 -8 406 289 120 82 chr21 5943078 5943171 -28964399 - L3 LINE CR1 -1092 485 397 951 113 60 6 chr21 5943171 5943339 -28964231 + L1MA4 LINE L1 6109 6285 -15 406 289 120 82 chr21 5943339 5943587 -28963983 - L3 LINE CR1 -1180 397 131 21 0 0 0 chr21 5944100 5944121 -28963449 + AT_rich Low_complexity Low_complexity 1 21 0 195 219 0 0 chr21 5944598 5944639 -28962931 + L2 LINE L2 3230 3270 -2 384 349 24 30 chr21 5944681 5944850 -28962720 - MIR3 SINE MIR -25 183 16 2271 105 3 0 chr21 5944912 5945208 -28962362 + AluSp SINE Alu 1 297 -16 566 143 133 0 chr21 5945365 5945463 -28962107 + AluJ SINE Alu 22 132 -180 391 324 0 29 chr21 5945946 5946037 -28961533 - L2 LINE L2 -5 3267 3180 1681 229 51 77 chr21 5946037 5946341 -28961229 - MLT2B3 LTR ERVL 0 554 270 2476 67 0 7 chr21 5946341 5946640 -28960930 - AluSx SINE Alu -15 297 1 1681 229 51 77 chr21 5946640 5946904 -28960666 - MLT2B3 LTR ERVL -284 270 1 391 324 0 29 chr21 5946904 5946948 -28960622 - L2 LINE L2 -92 3180 3136 1869 130 0 34 chr21 5946961 5947253 -28960317 + AluSx SINE Alu 27 308 -4 943 192 6 17 chr21 5947253 5947448 -28960122 + AluJ SINE Alu 134 312 0 754 164 9 0 chr21 5947529 5947639 -28959931 + FLAM_A SINE Alu 1 111 -31 300 111 0 0 chr21 5947644 5947689 -28959881 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 203 200 0 0 chr21 5948471 5948506 -28959064 + T-rich Low_complexity Low_complexity 1 35 0 1461 160 4 4 chr21 5949712 5949949 -28957621 - AluJb SINE Alu -75 237 1 2388 66 7 7 chr21 5950423 5950724 -28956846 + AluY SINE Alu 1 301 -10 680 229 15 0 chr21 5950848 5950979 -28956591 + MER39 LTR ERV1 1 133 -574 2827 157 90 37 chr21 5950952 5951120 -28956450 + LTR48 LTR ERV1 132 290 -497 1769 139 45 7 chr21 5951120 5951408 -28956162 + AluJo SINE Alu 1 299 -13 2827 157 90 37 chr21 5951408 5951862 -28955708 + LTR48 LTR ERV1 290 787 0 924 188 0 24 chr21 5952577 5952747 -28954823 - FAM SINE Alu -9 40 1 289 341 23 31 chr21 5952975 5953104 -28954466 - MIR3 SINE MIR -51 157 30 24 0 0 0 chr21 5953403 5953427 -28954143 + AT_rich Low_complexity Low_complexity 1 24 0 2513 222 24 16 chr21 5953561 5954186 -28953384 - L1M4 LINE L1 -1429 4717 4088 25 0 0 0 chr21 5954194 5954219 -28953351 + AT_rich Low_complexity Low_complexity 1 25 0 541 231 48 21 chr21 5954669 5954834 -28952736 - MLT1G3 LTR MaLR -180 410 177 1937 100 32 55 chr21 5954955 5955264 -28952306 - AluSx SINE Alu -10 302 1 455 117 0 13 chr21 5955385 5955462 -28952108 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1786 138 6 55 chr21 5955554 5955881 -28951689 + AluSx SINE Alu 1 311 -1 305 356 43 5 chr21 5955928 5956116 -28951454 + L2 LINE L2 2824 3018 -254 727 212 15 0 chr21 5956842 5956974 -28950596 + AluJo SINE Alu 1 134 -178 2831 119 46 5 chr21 5957262 5957673 -28949897 - MSTA LTR MaLR 0 428 1 10154 170 16 4 chr21 5957676 5959304 -28948266 - MSTA-int LTR MaLR -4 1647 1 2599 143 44 7 chr21 5959304 5959717 -28947853 - MSTA LTR MaLR 0 428 1 238 309 104 48 chr21 5959896 5960147 -28947423 - L2 LINE L2 -834 2480 2204 1442 226 40 0 chr21 5960147 5960322 -28947248 - AluJb SINE Alu -3 309 116 300 27 0 0 chr21 5960322 5960359 -28947211 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1442 226 40 0 chr21 5960359 5960480 -28947090 - AluJb SINE Alu -196 116 1 238 309 104 48 chr21 5960480 5960564 -28947006 - L2 LINE L2 -1110 2204 2126 324 276 20 20 chr21 5960623 5960721 -28946849 - MER5A DNA MER1_type -76 113 16 207 139 0 0 chr21 5960849 5960885 -28946685 + (GA)n Simple_repeat Simple_repeat 2 37 0 246 358 58 23 chr21 5961314 5961574 -28945996 - L2 LINE L2 -1930 1384 1116 437 286 56 25 chr21 5961833 5961994 -28945576 + MER5B DNA MER1_type 12 177 -1 2182 162 20 0 chr21 5962103 5962449 -28945121 - MLT1A1 LTR MaLR -3 362 10 2248 144 38 71 chr21 5962630 5963052 -28944518 + MSTB LTR MaLR 19 426 0 300 258 62 107 chr21 5963873 5964164 -28943406 - L1ME4a LINE L1 -157 5964 5687 597 293 80 20 chr21 5964194 5964494 -28943076 - L1ME4a LINE L1 -2186 5622 5305 24 0 0 0 chr21 5964689 5964713 -28942857 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr21 5964723 5964747 -28942823 + AT_rich Low_complexity Low_complexity 1 24 0 571 172 104 8 chr21 5965132 5965266 -28942304 + ORSL DNA AcHobo 30 176 -99 1012 175 208 29 chr21 5965397 5965637 -28941933 - AluYa5 SINE Alu -18 283 1 262 283 115 32 chr21 5965943 5966068 -28941502 - MLT1H1 LTR MaLR 0 555 415 302 362 36 0 chr21 5966077 5966215 -28941355 + L2 LINE L2 1860 2002 -1312 1832 251 22 28 chr21 5966311 5966810 -28940760 - MLT1D LTR MaLR 0 505 10 901 154 64 0 chr21 5967120 5967276 -28940294 + FAM SINE Alu 1 41 -8 303 206 0 69 chr21 5968487 5968589 -28938981 + (TATATG)n Simple_repeat Simple_repeat 4 98 0 1459 149 48 10 chr21 5968591 5968880 -28938690 - L1MA7 LINE L1 -5 6286 5987 290 324 44 15 chr21 5969642 5969778 -28937792 + MIR SINE MIR 110 249 -13 22 0 0 0 chr21 5969878 5969900 -28937670 + AT_rich Low_complexity Low_complexity 1 22 0 4943 62 23 0 chr21 5970530 5971131 -28936439 + L1PA7 LINE L1 5534 6148 -6 2409 80 6 10 chr21 5971404 5971718 -28935852 - AluSp SINE Alu 0 313 1 528 232 76 45 chr21 5971753 5971977 -28935593 - HAL1 LINE L1 -1 2506 2276 647 276 57 50 chr21 5972096 5972375 -28935195 - HAL1 LINE L1 -271 2236 1956 2600 239 75 60 chr21 5972419 5973463 -28934107 - HAL1 LINE L1 -629 1878 820 4126 162 27 7 chr21 5973543 5974240 -28933330 - MER50 LTR ERV1 -23 711 1 1014 186 5 29 chr21 5974240 5974442 -28933128 + MER3 DNA MER1_type 13 209 0 407 282 102 93 chr21 5974708 5974875 -28932695 - HAL1 LINE L1 -2171 336 172 2304 85 14 0 chr21 5974875 5975168 -28932402 - AluSc SINE Alu -12 297 1 407 282 102 93 chr21 5975168 5975182 -28932388 - HAL1 LINE L1 -2335 172 160 1609 147 15 33 chr21 5975182 5975454 -28932116 - AluJo SINE Alu -45 267 1 407 282 102 93 chr21 5975454 5975594 -28931976 - HAL1 LINE L1 -2347 160 11 1167 196 31 24 chr21 5977045 5977300 -28930270 - LTR48B LTR ERV1 -7 637 381 1249 192 74 24 chr21 5977375 5977712 -28929858 - LTR48 LTR ERV1 -376 268 1 408 333 94 9 chr21 5977749 5977962 -28929608 - MIR SINE MIR -12 250 20 2184 95 0 0 chr21 5979244 5979545 -28928025 + AluSc SINE Alu 6 306 0 2034 141 3 3 chr21 5979567 5979873 -28927697 + AluSq SINE Alu 1 306 -7 2727 23 0 0 chr21 5980349 5980652 -28926918 + AluY SINE Alu 1 303 -8 590 202 9 0 chr21 5980936 5981045 -28926525 + MER63 DNA MER1_type 949 1058 -3 417 298 19 0 chr21 5981823 5981927 -28925643 + L2 LINE L2 3166 3271 -1 3406 154 14 30 chr21 5981983 5982651 -28924919 + L1MC1 LINE L1 5173 5828 -505 1284 179 49 0 chr21 5982651 5982875 -28924695 + AluJb SINE Alu 1 235 -77 1588 145 74 27 chr21 5982875 5983171 -28924399 + L1MC1 LINE L1 5841 6150 -183 712 188 56 7 chr21 5983171 5983315 -28924255 + LTR54B LTR ERV1 1 151 -347 1481 136 4 0 chr21 5983365 5983593 -28923977 + LTR54 LTR ERV1 282 510 0 697 186 5 62 chr21 5983593 5983674 -28923896 + L1MC1 LINE L1 6150 6234 -99 192 40 0 0 chr21 5983674 5983699 -28923871 + (TG)n Simple_repeat Simple_repeat 2 26 0 697 186 5 62 chr21 5983699 5983798 -28923772 + L1MC1 LINE L1 6234 6321 -12 2272 107 0 0 chr21 5983798 5984097 -28923473 + AluY SINE Alu 1 299 -12 697 186 5 62 chr21 5984097 5984109 -28923461 + L1MC1 LINE L1 6321 6332 -1 1525 235 43 3 chr21 5984528 5984883 -28922687 - LTR51 LTR ERV1 -96 626 241 1848 137 68 30 chr21 5985014 5985351 -28922219 - MER61C LTR ERV1 0 434 85 253 293 122 0 chr21 5985399 5985481 -28922089 - MER101B LTR ERV1 -469 101 10 2116 96 48 0 chr21 5985954 5986246 -28921324 - AluSq SINE Alu -7 306 1 837 128 0 38 chr21 5986958 5987091 -28920479 + FLAM_C SINE Alu 1 128 -15 2102 108 17 3 chr21 5987404 5987692 -28919878 - AluSg SINE Alu -18 292 1 484 281 65 7 chr21 5987696 5987835 -28919735 - MIR SINE MIR -114 148 2 198 0 0 0 chr21 5988171 5988193 -28919377 + (TC)n Simple_repeat Simple_repeat 1 22 0 1254 156 14 18 chr21 5988262 5988480 -28919090 + MLT1B LTR MaLR 1 217 -173 889 175 75 18 chr21 5988494 5988719 -28918851 + MER39 LTR ERV1 1 281 -426 1990 130 45 60 chr21 5988699 5988938 -28918632 + MER39 LTR ERV1 175 416 -291 2278 128 0 0 chr21 5988938 5989250 -28918320 - AluSx SINE Alu 0 312 1 1990 130 45 60 chr21 5989250 5989406 -28918164 + MER39 LTR ERV1 416 707 0 766 206 31 12 chr21 5989406 5989566 -28918004 + MLT1B LTR MaLR 228 390 0 1831 151 34 7 chr21 5990174 5990465 -28917105 + AluJo SINE Alu 1 299 -13 249 139 0 0 chr21 5991543 5991586 -28915984 + (A)n Simple_repeat Simple_repeat 1 43 0 465 66 40 26 chr21 5992775 5992851 -28914719 + MADE1 DNA Mariner 2 78 -2 5175 72 25 15 chr21 5993043 5993465 -28914105 + PABL_A LTR ERV1 1 433 -227 2270 108 3 13 chr21 5993465 5993780 -28913790 + AluSx SINE Alu 1 312 0 5175 72 25 15 chr21 5993780 5994011 -28913559 + PABL_A LTR ERV1 433 660 0 4120 187 39 53 chr21 5994387 5995354 -28912216 - LTR13 LTR ERVK 0 954 1 2305 83 0 30 chr21 5995423 5995724 -28911846 + AluY SINE Alu 1 292 -19 25 0 0 0 chr21 5995742 5995767 -28911803 + AT_rich Low_complexity Low_complexity 1 25 0 3411 123 86 2 chr21 5995940 5996426 -28911144 + MER1A DNA MER1_type 1 527 0 2338 82 3 0 chr21 5997599 5997892 -28909678 + AluSg SINE Alu 5 298 -12 921 217 21 77 chr21 5998137 5998174 -28909396 - MER58A DNA MER1_type -2196 224 187 2478 60 0 3 chr21 5998174 5998473 -28909097 + AluY SINE Alu 1 298 -13 921 217 21 77 chr21 5998473 5998670 -28908900 - MER58A DNA MER1_type -2233 187 3 3423 110 41 20 chr21 5999369 5999969 -28907601 - MER4B LTR ERV1 0 779 2 260 266 81 58 chr21 5999985 6000084 -28907486 + MER5B DNA MER1_type 61 161 -28 1484 142 41 90 chr21 6000172 6000537 -28907033 - LTR49 LTR ERV1 0 595 249 532 123 0 0 chr21 6000534 6000615 -28906955 - LTR49 LTR ERV1 -266 329 249 1891 98 115 0 chr21 6000612 6000907 -28906663 - LTR49 LTR ERV1 -266 329 1 26 64 0 0 chr21 6001253 6001300 -28906270 + AT_rich Low_complexity Low_complexity 1 47 0 14968 191 23 14 chr21 6001301 6001658 -28905912 - L1PB1 LINE L1 -1 6866 6514 441 0 0 0 chr21 6001658 6001707 -28905863 + (TG)n Simple_repeat Simple_repeat 2 50 0 14968 191 23 14 chr21 6001707 6003117 -28904453 - L1PB1 LINE L1 -353 6514 5118 243 0 0 0 chr21 6003117 6003144 -28904426 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 14968 191 23 14 chr21 6003144 6006902 -28900668 - L1PB1 LINE L1 -1749 5118 1094 1919 207 12 5 chr21 6006906 6007322 -28900248 - L1PB1 LINE L1 -5817 1046 628 968 282 65 16 chr21 6007365 6007794 -28899776 - L1PB1 LINE L1 -6313 550 101 4140 136 30 19 chr21 6008077 6008704 -28898866 + MER41B LTR ERV1 1 634 -1 2488 40 7 3 chr21 6009194 6009492 -28898078 - AluY SINE Alu -12 299 1 2266 118 0 0 chr21 6010330 6010636 -28896934 - AluSg1 SINE Alu -3 306 1 2516 51 3 16 chr21 6011105 6011417 -28896153 - AluY SINE Alu -3 308 1 1925 129 0 41 chr21 6011933 6012054 -28895516 - AluSx SINE Alu 0 302 178 7681 81 2 1 chr21 6012054 6013021 -28894549 - LTR5 LTR ERVK -1 968 1 1925 129 0 41 chr21 6013021 6013213 -28894357 - AluSx SINE Alu -124 178 1 269 276 95 59 chr21 6013268 6013453 -28894117 + MER5A DNA MER1_type 2 178 0 384 22 0 0 chr21 6013550 6013595 -28893975 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 625 233 68 34 chr21 6014223 6014429 -28893141 - LTR7 LTR ERV1 0 450 238 625 130 0 0 chr21 6014939 6015031 -28892539 - LTR7 LTR ERV1 -358 92 1 285 286 61 20 chr21 6015130 6015228 -28892342 - L2 LINE L2 -84 3229 3128 501 320 60 39 chr21 6015231 6015615 -28891955 - L2 LINE L2 -118 3195 2804 2151 112 33 3 chr21 6015679 6015983 -28891587 - AluSp SINE Alu 0 313 1 2304 120 0 0 chr21 6016123 6016432 -28891138 + AluSg SINE Alu 1 309 -1 2060 133 0 0 chr21 6016587 6016872 -28890698 - AluSx SINE Alu -27 285 1 1762 168 0 30 chr21 6016880 6017184 -28890386 - AluJb SINE Alu -17 295 1 434 327 76 18 chr21 6017185 6017408 -28890162 - L2 LINE L2 -1000 2314 2079 1422 186 29 26 chr21 6017438 6017744 -28889826 - MER21B LTR ERV1 0 863 557 2256 96 3 0 chr21 6018173 6018466 -28889104 - AluSc SINE Alu -12 297 4 4986 114 20 44 chr21 6018697 6019485 -28888085 - MER4E LTR ERV1 -10 769 1 311 151 329 0 chr21 6019502 6019575 -28887995 - MER21B LTR ERV1 -308 555 459 238 61 0 0 chr21 6019573 6019606 -28887964 + Tigger1 DNA MER2_type 1444 1476 -942 2069 111 7 14 chr21 6019613 6019901 -28887669 + AluSx SINE Alu 6 291 -21 2681 183 49 0 chr21 6019908 6020361 -28887209 - MER21B LTR ERV1 -388 475 1 235 303 101 27 chr21 6020374 6020562 -28887008 - L2 LINE L2 -1369 1945 1744 212 146 0 49 chr21 6020859 6020900 -28886670 + (TATG)n Simple_repeat Simple_repeat 1 39 0 2504 132 22 79 chr21 6020900 6021354 -28886216 + MSTA LTR MaLR 1 428 0 392 0 21 0 chr21 6021357 6021405 -28886165 + (TG)n Simple_repeat Simple_repeat 2 50 0 2436 74 3 0 chr21 6021411 6021707 -28885863 - AluSp SINE Alu -15 298 2 277 100 20 0 chr21 6021819 6021869 -28885701 - L1MB5 LINE L1 -25 6149 6099 962 121 5 27 chr21 6021869 6022060 -28885510 + MER4B LTR ERV1 1 225 -385 2132 240 32 11 chr21 6022072 6022610 -28884960 + L1PBa LINE L1 6 554 -6309 2342 170 14 21 chr21 6022640 6023075 -28884495 + L1PBa LINE L1 617 1048 -5815 8402 138 33 6 chr21 6023076 6024576 -28882994 + L1PBa LINE L1 1093 2782 -4081 5305 186 43 5 chr21 6024581 6025685 -28881885 + L1 LINE L1 2826 3972 -2890 1019 94 7 7 chr21 6025690 6025828 -28881742 - L1PA11 LINE L1 -2 6172 6035 862 46 55 0 chr21 6025828 6025937 -28881633 - MER85 DNA T2_type -24 115 1 1077 79 6 18 chr21 6025937 6026101 -28881469 - L1PA11 LINE L1 -121 6053 5892 2032 128 18 98 chr21 6026104 6026503 -28881067 + MER4B LTR ERV1 188 554 -56 627 83 73 28 chr21 6026483 6026592 -28880978 + MER4D LTR ERV1 759 872 0 1069 154 0 18 chr21 6026651 6026820 -28880750 + FRAM SINE Alu 1 163 -13 1192 194 75 18 chr21 6026864 6027116 -28880454 - L1MB5 LINE L1 -178 5996 5702 5300 151 5 21 chr21 6027112 6027116 -28880454 - L1MB2 LINE L1 -38 6133 5160 7123 172 18 38 chr21 6027117 6029585 -28877985 - L1MB1 LINE L1 -39 6129 3718 240 171 0 53 chr21 6030135 6030211 -28877359 + CT-rich Low_complexity Low_complexity 4 75 0 1061 201 20 126 chr21 6030407 6030850 -28876720 - L1MA8 LINE L1 -17 6274 5879 4917 101 23 1 chr21 6030870 6031561 -28876009 - THE1B-int LTR MaLR -874 706 1 1442 137 31 42 chr21 6031561 6031860 -28875710 - THE1B LTR MaLR 0 364 44 1954 134 25 0 chr21 6033222 6033505 -28874065 - AluSx SINE Alu -22 290 1 1692 178 21 45 chr21 6033705 6034042 -28873528 - MLT1C LTR MaLR -2 465 137 2647 196 25 25 chr21 6034044 6034682 -28872888 + L1PB4 LINE L1 3000 3637 -2509 1301 159 0 32 chr21 6034725 6034945 -28872625 - AluSx SINE Alu -99 213 1 3998 192 11 22 chr21 6034949 6035621 -28871949 + L1PB4 LINE L1 3623 4286 -1860 2824 88 5 39 chr21 6035621 6035660 -28871910 - THE1C LTR MaLR 0 375 336 2347 61 14 7 chr21 6035660 6035956 -28871614 + AluY SINE Alu 1 298 -13 2824 88 5 39 chr21 6035956 6036304 -28871266 - THE1C LTR MaLR -39 336 1 3998 192 11 22 chr21 6036304 6036466 -28871104 + L1PB4 LINE L1 4286 4448 -1698 7019 58 4 42 chr21 6036474 6037466 -28870104 - SVA Other Other 0 1386 433 2706 75 32 70 chr21 6037534 6038944 -28868626 - SVA Other Other -520 866 393 5003 167 21 19 chr21 6039006 6040471 -28867099 + L1PB4 LINE L1 4435 5915 -241 2129 106 0 33 chr21 6040471 6040772 -28866798 + AluSg SINE Alu 1 291 -19 5003 167 21 19 chr21 6040772 6041014 -28866556 + L1PB4 LINE L1 5915 6155 -1 648 201 21 14 chr21 6041014 6041158 -28866412 - MLT1C LTR MaLR -319 148 4 400 350 49 74 chr21 6041367 6041664 -28865906 + L2 LINE L2 2488 2772 -542 599 163 43 113 chr21 6041664 6041805 -28865765 + FLAM_A SINE Alu 1 131 -2 400 350 49 74 chr21 6041805 6041938 -28865632 + L2 LINE L2 2772 2907 -407 355 306 179 8 chr21 6041931 6042065 -28865505 - MER5A DNA MER1_type -7 182 26 386 289 78 121 chr21 6042118 6042464 -28865106 + L2 LINE L2 2932 3262 -10 332 123 0 18 chr21 6042465 6042522 -28865048 + MER50 LTR ERV1 499 554 -180 1257 52 0 0 chr21 6042540 6042694 -28864876 - AluY SINE Alu -14 297 144 740 172 7 40 chr21 6042694 6042845 -28864725 + MER50 LTR ERV1 587 732 -2 341 180 0 0 chr21 6042845 6042906 -28864664 + MER50-int LTR ERV1 43 103 -7102 243 146 0 0 chr21 6042908 6042949 -28864621 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 481 192 20 20 chr21 6043883 6043982 -28863588 - MER63 DNA MER1_type -311 751 27 275 311 85 18 chr21 6044384 6044548 -28863022 - LTR16A LTR ERVL -258 192 18 2176 258 25 25 chr21 6045072 6045627 -28861943 + MLT1H1 LTR MaLR 1 555 0 1709 149 29 11 chr21 6045687 6045968 -28861602 - AluJb SINE Alu 0 312 27 316 286 24 32 chr21 6046896 6047022 -28860548 - MIR SINE MIR -95 167 43 292 246 63 63 chr21 6047064 6047206 -28860364 - L2 LINE L2 0 3313 3172 297 243 14 0 chr21 6047781 6047855 -28859715 + MER116 DNA Mariner 1 75 -5 232 246 66 0 chr21 6047922 6047983 -28859587 + MIR SINE MIR 87 151 -111 2471 50 0 7 chr21 6048022 6048325 -28859245 + AluY SINE Alu 1 301 -10 2467 142 25 0 chr21 6048349 6048742 -28858828 - L1 LINE L1 -981 5165 4763 1077 254 98 10 chr21 6048742 6049049 -28858521 + MER69 DNA AcHobo 50 383 -843 393 224 157 8 chr21 6049438 6049572 -28857998 + MER69 DNA AcHobo 2218 2371 -155 843 169 6 52 chr21 6049575 6049791 -28857779 - AluJb SINE Alu 0 312 134 2418 73 3 3 chr21 6049791 6050093 -28857477 - AluY SINE Alu -9 302 1 451 206 66 15 chr21 6050117 6050253 -28857317 + MER69 DNA AcHobo 2375 2517 -9 440 248 73 77 chr21 6050713 6050947 -28856623 + MLT1J1 LTR MaLR 1 233 -213 302 257 28 32 chr21 6051107 6051252 -28856318 + MIR SINE MIR 61 200 -61 1653 211 60 0 chr21 6051352 6051754 -28855816 - L1MD3 LINE L1 0 7995 7570 2501 124 81 2 chr21 6051769 6052163 -28855407 - MSTA LTR MaLR 0 428 4 231 250 0 0 chr21 6052626 6052678 -28854892 + GA-rich Low_complexity Low_complexity 3 54 0 2521 41 0 3 chr21 6053449 6053743 -28853827 - AluY SINE Alu -18 293 1 1560 194 32 0 chr21 6054546 6054824 -28852746 - AluJo SINE Alu -25 287 1 2332 91 0 7 chr21 6055143 6055450 -28852120 - AluSc SINE Alu -4 305 1 1526 251 43 14 chr21 6056373 6056795 -28850775 - MER57B LTR ERV1 0 434 1 2150 153 21 30 chr21 6057357 6057840 -28849730 - MER39 LTR ERV1 0 707 178 734 188 9 0 chr21 6057844 6057956 -28849614 + AluJb SINE Alu 6 118 -194 23 33 0 0 chr21 6057962 6057992 -28849578 + AT_rich Low_complexity Low_complexity 1 30 0 949 159 94 0 chr21 6057992 6058162 -28849408 - MER39 LTR ERV1 -513 194 9 3799 139 29 10 chr21 6059511 6060147 -28847423 - MER39B LTR ERV1 -1 630 1 7225 153 31 41 chr21 6060203 6061631 -28845939 - MER39B-int LTR ERV1 -148 6183 4769 1537 188 14 24 chr21 6061627 6061915 -28845655 - MER39B-int LTR ERV1 -6046 285 1 752 187 116 30 chr21 6061919 6061996 -28845574 - MER39B LTR ERV1 -3 650 581 1598 175 24 7 chr21 6061996 6062287 -28845283 - AluJo SINE Alu -16 296 1 752 187 116 30 chr21 6062287 6062407 -28845163 - MER39B LTR ERV1 -72 581 436 655 62 0 0 chr21 6062409 6062489 -28845081 + AluSx SINE Alu 2 81 -232 2297 98 0 22 chr21 6062490 6062805 -28844765 + AluY SINE Alu 1 308 -3 1661 109 30 0 chr21 6062805 6063034 -28844536 + AluSx SINE Alu 71 307 -3 2687 134 24 61 chr21 6063034 6063329 -28844241 - MER39B LTR ERV1 -208 445 172 2643 51 0 3 chr21 6063329 6063641 -28843929 - AluY SINE Alu 0 311 1 2687 134 24 61 chr21 6063641 6063807 -28843763 - MER39B LTR ERV1 -481 172 1 876 191 84 83 chr21 6063807 6064121 -28843449 - MER39 LTR ERV1 -77 630 174 246 247 22 45 chr21 6064719 6064808 -28842762 - MER34 LTR ERV1 -13 529 443 533 241 121 36 chr21 6064913 6065242 -28842328 - LTR48 LTR ERV1 -304 483 7 214 244 0 0 chr21 6065880 6065925 -28841645 + T-rich Low_complexity Low_complexity 5 49 0 28616 34 1 1 chr21 6065927 6070127 -28837443 - L1PA4 LINE L1 0 6155 1957 21 57 0 0 chr21 6071222 6071257 -28836313 + AT_rich Low_complexity Low_complexity 1 35 0 216 158 0 0 chr21 6071395 6071433 -28836137 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2226 151 43 14 chr21 6071436 6072059 -28835511 + MER39 LTR ERV1 1 707 0 207 294 29 0 chr21 6072061 6072129 -28835441 + (TATG)n Simple_repeat Simple_repeat 2 71 0 838 277 58 43 chr21 6072204 6072853 -28834717 - L1MC4a LINE L1 -1841 5967 5256 30 0 0 0 chr21 6073044 6073074 -28834496 + AT_rich Low_complexity Low_complexity 1 30 0 1681 196 14 3 chr21 6073091 6073387 -28834183 - AluJb SINE Alu -11 301 3 335 304 77 80 chr21 6073471 6073584 -28833986 - L1MC4a LINE L1 -1200 4946 4834 1684 189 0 0 chr21 6073584 6073869 -28833701 - AluJo SINE Alu -25 287 3 1914 162 0 7 chr21 6073877 6074180 -28833390 - AluJb SINE Alu -11 301 1 335 304 77 80 chr21 6074180 6074422 -28833148 - L1MC4a LINE L1 -1319 4827 4583 589 124 0 0 chr21 6074495 6074584 -28832986 - AluSg/x SINE Alu -5 304 216 4299 121 123 78 chr21 6074587 6075992 -28831578 - pTR5 LTR ERV1 0 2438 761 598 189 25 33 chr21 6075975 6076097 -28831473 - AluSp SINE Alu -57 256 136 1767 152 72 21 chr21 6076209 6076572 -28830998 + MER39 LTR ERV1 1 344 -363 1872 193 55 24 chr21 6076572 6076991 -28830579 + MSTB1 LTR MaLR 1 432 0 1767 152 72 21 chr21 6076991 6077239 -28830331 + MER39 LTR ERV1 344 707 0 282 179 15 0 chr21 6077402 6077469 -28830101 - L1MA8 LINE L1 -2 6289 6222 276 136 0 0 chr21 6077470 6077514 -28830056 - Alu SINE Alu -258 44 1 3063 179 39 23 chr21 6077575 6078268 -28829302 + MER67C LTR ERV1 7 710 0 715 232 67 74 chr21 6078276 6078573 -28828997 + MLT1J LTR MaLR 217 511 0 1492 208 61 14 chr21 6079700 6080046 -28827524 + MLT1A1 LTR MaLR 1 362 -3 917 176 7 7 chr21 6080513 6080666 -28826904 - FRAM SINE Alu -4 172 20 272 276 60 55 chr21 6080702 6080919 -28826651 - L1MC4a LINE L1 -1907 5901 5684 255 31 0 0 chr21 6082392 6082424 -28825146 + (CA)n Simple_repeat Simple_repeat 2 33 0 660 222 138 6 chr21 6082586 6082753 -28824817 - MER5A DNA MER1_type 0 189 1 75 45 0 0 chr21 6083216 6083326 -28824244 + AT_rich Low_complexity Low_complexity 1 110 0 430 210 70 0 chr21 6083326 6083426 -28824144 - MER45 DNA AcHobo -61 117 11 269 220 0 0 chr21 6083635 6083685 -28823885 + MER5A DNA MER1_type 9 58 -131 21 0 0 56 chr21 6083952 6083969 -28823601 + AT_rich Low_complexity Low_complexity 1 17 -17 2516 61 0 3 chr21 6083969 6084281 -28823289 + AluY SINE Alu 1 311 0 21 0 0 56 chr21 6084281 6084299 -28823271 + AT_rich Low_complexity Low_complexity 17 34 0 22 70 0 0 chr21 6084316 6084359 -28823211 + AT_rich Low_complexity Low_complexity 1 43 0 1566 183 20 22 chr21 6084911 6085266 -28822304 - MLT1A1 LTR MaLR -11 354 1 30062 94 10 10 chr21 6087612 6094063 -28813507 - L1PA7 LINE L1 0 6469 2 491 255 115 5 chr21 6094499 6094691 -28812879 + MIR SINE MIR 22 234 -28 24 32 0 0 chr21 6094705 6094736 -28812834 + AT_rich Low_complexity Low_complexity 1 31 0 246 62 0 0 chr21 6094845 6094877 -28812693 + (TATG)n Simple_repeat Simple_repeat 4 35 0 641 267 63 0 chr21 6095709 6095900 -28811670 + MIR SINE MIR 60 262 0 38 22 0 0 chr21 6096246 6096291 -28811279 + AT_rich Low_complexity Low_complexity 1 45 0 2385 103 3 0 chr21 6096335 6096647 -28810923 - AluSq SINE Alu 0 313 1 539 245 14 0 chr21 6096720 6096859 -28810711 - L1MC4 LINE L1 -658 7384 7244 745 247 94 50 chr21 6096915 6097389 -28810181 - L1MC4 LINE L1 -889 6919 6451 444 205 27 18 chr21 6097433 6097545 -28810025 + MER4A LTR ERV1 1 113 -551 1423 246 52 62 chr21 6097567 6098149 -28809421 + LTR34 LTR ERV1 104 679 -20 210 71 0 0 chr21 6099771 6099799 -28807771 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1778 166 41 19 chr21 6100930 6101297 -28806273 + MLT2D LTR ERVL 38 412 -2 454 211 11 0 chr21 6101943 6102033 -28805537 - MIR3 SINE MIR -14 194 104 2028 196 23 15 chr21 6103325 6103718 -28803852 - MSTD LTR MaLR 0 396 1 234 345 109 0 chr21 6103754 6103873 -28803697 + L2 LINE L2 1853 1984 -1330 1924 168 0 22 chr21 6104152 6104467 -28803103 - AluJo SINE Alu 0 312 5 291 208 139 0 chr21 6104696 6104797 -28802773 - LTR67 LTR ERVL -10 547 433 821 236 82 71 chr21 6105875 6106163 -28801407 + L1ME2 LINE L1 5711 6007 -157 2240 103 3 0 chr21 6106163 6106455 -28801115 + AluSx SINE Alu 1 293 -19 821 236 82 71 chr21 6106455 6106615 -28800955 + L1ME2 LINE L1 6007 6164 0 306 0 0 0 chr21 6107112 6107146 -28800424 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr21 6107383 6107406 -28800164 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr21 6110855 6110881 -28796689 + AT_rich Low_complexity Low_complexity 1 26 0 379 339 92 11 chr21 6111818 6111992 -28795578 + MIR SINE MIR 29 216 -46 498 232 38 63 chr21 6112206 6112521 -28795049 + L1MC5 LINE L1 7630 7936 -25 1100 138 46 6 chr21 6112643 6112817 -28794753 + AluJb SINE Alu 1 181 -131 447 237 103 43 chr21 6113295 6113331 -28794239 + MER112 DNA MER1_type 6 38 -222 1904 143 13 7 chr21 6113331 6113631 -28793939 - AluJo SINE Alu -10 302 1 447 237 103 43 chr21 6113631 6113826 -28793744 + MER112 DNA MER1_type 38 251 -9 35 0 0 0 chr21 6115766 6115801 -28791769 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 6116184 6116212 -28791358 + AT_rich Low_complexity Low_complexity 1 28 0 387 346 82 25 chr21 6117543 6117702 -28789868 + L2 LINE L2 3104 3271 -1 23 0 0 0 chr21 6117704 6117727 -28789843 + AT_rich Low_complexity Low_complexity 1 23 0 4265 58 74 71 chr21 6118757 6119133 -28788437 + L1PA7 LINE L1 5491 5871 -283 2538 48 0 0 chr21 6119133 6119428 -28788142 - AluY SINE Alu -16 295 1 4265 58 74 71 chr21 6119428 6119712 -28787858 + L1PA7 LINE L1 5871 6153 -1 1829 149 0 11 chr21 6120030 6120305 -28787265 - AluSx SINE Alu -23 289 18 1585 176 34 20 chr21 6121097 6121392 -28786178 + AluJb SINE Alu 1 299 -13 804 177 109 21 chr21 6122893 6123085 -28784485 + MER3 DNA MER1_type 1 209 0 2186 119 0 0 chr21 6123186 6123472 -28784098 - AluSq SINE Alu -27 286 1 2118 105 4 4 chr21 6124415 6124691 -28782879 + AluSq SINE Alu 1 276 -37 1243 153 181 8 chr21 6124982 6125236 -28782334 + MSTA LTR MaLR 1 298 -130 282 79 0 0 chr21 6125267 6125305 -28782265 + MSTA LTR MaLR 380 417 -11 5725 162 22 39 chr21 6125314 6126467 -28781103 + MSTA-int LTR MaLR 3 1135 -445 1155 125 29 19 chr21 6126467 6126675 -28780895 + MSTA-int LTR MaLR 1371 1580 0 1778 150 161 6 chr21 6126675 6127036 -28780534 + MSTA LTR MaLR 1 417 -11 467 281 41 6 chr21 6127501 6127672 -28779898 + L2 LINE L2 3133 3309 -4 22 35 0 0 chr21 6128137 6128166 -28779404 + AT_rich Low_complexity Low_complexity 1 29 0 1633 177 77 32 chr21 6130201 6130386 -28777184 + MSTD LTR MaLR 1 176 -220 2473 80 0 0 chr21 6130386 6130697 -28776873 + AluY SINE Alu 1 311 0 1633 177 77 32 chr21 6130697 6130890 -28776680 + MSTD LTR MaLR 176 396 0 1050 156 68 5 chr21 6131472 6131664 -28775906 - MER46A DNA MER2_type 0 236 33 440 274 120 0 chr21 6131723 6131840 -28775730 + FLAM_A SINE Alu 10 140 -2 2635 132 21 9 chr21 6132298 6132721 -28774849 - MSTA LTR MaLR 0 428 1 2262 105 7 0 chr21 6133523 6133817 -28773753 - AluSp SINE Alu -17 296 1 583 336 34 8 chr21 6134373 6134608 -28772962 + MIR SINE MIR 1 241 -21 341 239 123 15 chr21 6134603 6134733 -28772837 + MIR3 SINE MIR 63 206 -2 730 206 0 15 chr21 6134843 6134974 -28772596 - FLAM_A SINE Alu -2 131 3 22 0 0 0 chr21 6135513 6135535 -28772035 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 6137236 6137264 -28770306 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 6137528 6137559 -28770011 + GC_rich Low_complexity Low_complexity 1 31 0 224 242 30 15 chr21 6138000 6138066 -28769504 - MIR SINE MIR -103 105 39 480 299 147 0 chr21 6138272 6138429 -28769141 + MER5A DNA MER1_type 9 188 -1 956 251 67 6 chr21 6138713 6139044 -28768526 - L1ME2 LINE L1 -6 6158 5808 1415 147 4 4 chr21 6139045 6139283 -28768287 - MSTB1 LTR MaLR -1 431 194 32 0 0 0 chr21 6139292 6139324 -28768246 + AT_rich Low_complexity Low_complexity 1 32 0 385 227 20 80 chr21 6139324 6139474 -28768096 - MSTB1 LTR MaLR -239 187 47 1768 178 3 13 chr21 6139477 6139781 -28767789 + AluJb SINE Alu 5 305 -7 1120 208 56 15 chr21 6139781 6140297 -28767273 + MLT1E2 LTR MaLR 27 615 -9 997 128 64 0 chr21 6140957 6141113 -28766457 + THE1B LTR MaLR 199 364 0 1952 137 79 0 chr21 6141289 6141670 -28765900 - Tigger3(Golem) DNA MER2_type -150 2879 2469 1965 158 104 15 chr21 6141672 6142065 -28765505 - MSTA LTR MaLR 0 428 1 4010 108 24 14 chr21 6142065 6142703 -28764867 - MSTA-int LTR MaLR 0 1580 937 2002 134 152 8 chr21 6143451 6143825 -28763745 + MSTA LTR MaLR 1 428 0 2032 139 0 13 chr21 6144350 6144653 -28762917 + AluJb SINE Alu 1 299 -13 1926 145 3 3 chr21 6145087 6145390 -28762180 + AluSc SINE Alu 1 303 0 2464 158 2 34 chr21 6146084 6146532 -28761038 - MER57B LTR ERV1 0 434 1 403 338 28 28 chr21 6146661 6146803 -28760767 - L2 LINE L2 0 3313 3172 578 291 78 60 chr21 6147185 6147584 -28759986 - MLT1J2 LTR MaLR -44 406 1 584 246 95 81 chr21 6148529 6148627 -28758943 + L2 LINE L2 3026 3121 -192 237 83 0 0 chr21 6148627 6148663 -28758907 + (TA)n Simple_repeat Simple_repeat 2 37 0 584 246 95 81 chr21 6148663 6148848 -28758722 + L2 LINE L2 3121 3313 0 1864 141 3 11 chr21 6149196 6149480 -28758090 - AluJo SINE Alu -4 308 27 255 311 109 50 chr21 6149810 6149929 -28757641 - L2 LINE L2 0 3272 3147 1739 134 0 0 chr21 6150768 6151006 -28756564 + AluSx SINE Alu 6 243 -69 2571 37 0 3 chr21 6151288 6151586 -28755984 - AluY SINE Alu -14 297 1 763 152 21 14 chr21 6152846 6152991 -28754579 - LTR23 LTR ERV1 -1 436 291 474 91 13 0 chr21 6152990 6153067 -28754503 - LTR23 LTR ERV1 -356 81 4 2651 157 73 77 chr21 6154283 6155061 -28752509 - LTR49-int LTR ERV1 -1843 4488 3714 8745 144 67 78 chr21 6155188 6157277 -28750293 - LTR49-int LTR ERV1 -2709 3622 1558 263 49 24 0 chr21 6158248 6158289 -28749281 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1263 160 69 11 chr21 6158492 6158754 -28748816 - LTR23 LTR ERV1 0 437 161 790 146 49 0 chr21 6158827 6158971 -28748599 - LTR23 LTR ERV1 -286 151 1 1750 214 102 13 chr21 6160472 6161029 -28746541 - L1ME2 LINE L1 -110 6054 5448 881 249 24 41 chr21 6161024 6161301 -28746269 + L1M4 LINE L1 5030 5304 -857 2379 86 0 0 chr21 6161301 6161604 -28745966 + AluY SINE Alu 1 303 -8 881 249 24 41 chr21 6161604 6161718 -28745852 + L1M4 LINE L1 5304 5418 -743 795 204 39 0 chr21 6162363 6162544 -28745026 - MER20 DNA MER1_type -3 216 29 829 130 163 3 chr21 6162613 6162908 -28744662 - MSTA LTR MaLR 0 428 1 230 250 77 0 chr21 6164651 6164703 -28742867 - L2 LINE L2 -12 3260 3205 579 308 78 52 chr21 6164983 6165370 -28742200 + LTR67 LTR ERVL 7 403 -154 306 246 0 0 chr21 6165432 6165497 -28742073 + MER31B LTR ERV1 4 68 -398 654 244 107 70 chr21 6165509 6166134 -28741436 + MER67A LTR ERV1 1 543 0 1159 204 108 26 chr21 6166222 6166565 -28741005 - MLT1H LTR MaLR -137 412 42 1070 191 69 20 chr21 6166803 6167106 -28740464 - MER33 DNA MER1_type 0 324 7 2300 83 0 27 chr21 6167233 6167533 -28740037 - AluSc SINE Alu -17 292 1 623 313 34 7 chr21 6167563 6167904 -28739666 - LTR16C LTR ERVL 0 491 97 1837 163 29 23 chr21 6168038 6168388 -28739182 - MLT1A1 LTR MaLR 0 365 14 2146 141 3 3 chr21 6169495 6169807 -28737763 + AluJb SINE Alu 1 312 0 2155 293 64 23 chr21 6170935 6171118 -28736452 + L2 LINE L2 1116 1290 -2024 1949 150 13 0 chr21 6171118 6171425 -28736145 - AluSx SINE Alu -1 311 1 2155 293 64 23 chr21 6171425 6172401 -28735169 + L2 LINE L2 1290 2378 -936 681 150 8 8 chr21 6172407 6172534 -28735036 - L1MB8 LINE L1 -13 6165 6039 334 113 0 0 chr21 6172540 6172593 -28734977 - L1MB8 LINE L1 -235 5943 5891 3557 136 21 59 chr21 6172593 6173306 -28734264 + Ricksha DNA DNA 2565 3250 -4 1671 176 43 0 chr21 6173313 6173636 -28733934 - L1MB8 LINE L1 -281 5897 5561 1195 225 35 59 chr21 6173770 6174143 -28733427 + L2 LINE L2 2341 2704 -610 270 152 0 0 chr21 6174160 6174206 -28733364 + Ricksha DNA DNA 3201 3246 -8 2189 124 0 6 chr21 6174985 6175300 -28732270 + AluSq SINE Alu 1 313 0 23 33 0 0 chr21 6175342 6175372 -28732198 + AT_rich Low_complexity Low_complexity 1 30 0 540 215 0 0 chr21 6175501 6175608 -28731962 - MER33 DNA MER1_type -217 107 1 390 280 75 43 chr21 6175623 6175809 -28731761 + LTR67 LTR ERVL 354 545 -12 301 261 70 42 chr21 6175904 6176046 -28731524 + MLT1I LTR MaLR 1 146 -263 1724 113 33 33 chr21 6176753 6177055 -28730515 + L1PA10 LINE L1 5867 6168 0 440 243 7 59 chr21 6177082 6177218 -28730352 - L1ME1 LINE L1 -10 6156 6028 231 36 0 0 chr21 6178057 6178085 -28729485 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 788 307 69 37 chr21 6178085 6178252 -28729318 - L2 LINE L2 -16 3297 3137 3867 115 30 13 chr21 6178252 6178852 -28728718 - MER4B LTR ERV1 0 610 1 788 307 69 37 chr21 6178852 6179120 -28728450 - L2 LINE L2 -176 3137 2848 985 326 39 14 chr21 6179319 6179828 -28727742 + ERVL LTR ERVL 3600 4121 -1643 370 245 73 40 chr21 6180003 6180154 -28727416 + ERVL LTR ERVL 4408 4563 -1201 369 0 0 0 chr21 6180930 6180971 -28726599 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 6180971 6181006 -28726564 + AT_rich Low_complexity Low_complexity 1 35 0 1291 183 4 21 chr21 6181015 6181256 -28726314 - AluJb SINE Alu -75 237 1 416 228 104 62 chr21 6181565 6181758 -28725812 + L2 LINE L2 3113 3313 0 1652 185 0 23 chr21 6182104 6182407 -28725163 + AluJb SINE Alu 1 296 -16 2215 117 3 16 chr21 6182532 6182840 -28724730 + AluSx SINE Alu 1 304 -8 1942 156 0 13 chr21 6183404 6183711 -28723859 - AluJo SINE Alu -9 303 1 226 289 90 32 chr21 6183776 6183932 -28723638 - MLT1J LTR MaLR -5 506 342 247 355 50 8 chr21 6184245 6184366 -28723204 - L2 LINE L2 -11 3261 3136 1164 149 34 0 chr21 6184403 6184611 -28722959 - MER61A LTR ERV1 0 343 129 7149 99 11 2 chr21 6184856 6186766 -28720804 + L1PA8A LINE L1 4208 6129 -2 673 316 74 47 chr21 6186843 6187314 -28720256 - L2 LINE L2 -556 2758 2275 2693 214 3 23 chr21 6187333 6187898 -28719672 - MLT2B3 LTR ERVL 0 554 1 2122 180 58 2 chr21 6187898 6188360 -28719210 - ERVL-B3 LTR ERVL -7 5757 5270 1563 146 142 0 chr21 6188362 6188650 -28718920 - ERVL-B3 LTR ERVL -695 5069 4741 10917 168 28 9 chr21 6188645 6190856 -28716714 - ERVL-B1 LTR ERVL -2286 3478 1158 22 0 0 0 chr21 6190856 6190878 -28716692 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr21 6191125 6191168 -28716402 + AT_rich Low_complexity Low_complexity 1 43 0 405 224 80 38 chr21 6191363 6191626 -28715944 - L1M4 LINE L1 -1575 4571 4298 1453 209 7 27 chr21 6191658 6191955 -28715615 - AluJo SINE Alu -21 291 1 4778 193 57 43 chr21 6191955 6193106 -28714464 - ERVL-B1 LTR ERVL -4594 1170 4 2331 216 18 18 chr21 6193114 6193629 -28713941 - MLT2B1 LTR ERVL -5 515 1 240 345 21 7 chr21 6193629 6193771 -28713799 - L2 LINE L2 -1061 2253 2110 419 384 53 49 chr21 6193839 6194290 -28713280 - L2 LINE L2 -11 3261 2809 443 262 86 45 chr21 6194600 6194821 -28712749 + MLT1K LTR MaLR 329 558 -30 396 260 59 14 chr21 6194897 6195116 -28712454 + L1ME3A LINE L1 4382 4610 -1536 26 30 0 0 chr21 6195131 6195164 -28712406 + AT_rich Low_complexity Low_complexity 1 33 0 192 152 0 0 chr21 6195164 6195197 -28712373 + (CA)n Simple_repeat Simple_repeat 2 34 0 1975 264 49 24 chr21 6195301 6196021 -28711549 + L1ME3A LINE L1 4749 5511 -651 1723 122 106 0 chr21 6196021 6196300 -28711270 + AluSg SINE Alu 1 306 0 1975 264 49 24 chr21 6196300 6196794 -28710776 + L1ME3A LINE L1 5511 5991 -171 474 284 15 8 chr21 6196799 6196933 -28710637 + L1ME3A LINE L1 6029 6163 -7 2468 74 0 13 chr21 6197204 6197515 -28710055 + AluSx SINE Alu 1 307 -5 1051 178 44 0 chr21 6198093 6198273 -28709297 + AluJb SINE Alu 124 311 -1 198 150 0 0 chr21 6199215 6199255 -28708315 + (TG)n Simple_repeat Simple_repeat 2 41 0 1778 78 16 4 chr21 6199712 6199954 -28707616 + L1PA7 LINE L1 5907 6151 -3 2283 109 0 3 chr21 6200031 6200343 -28707227 - AluY SINE Alu 0 311 1 1998 143 10 0 chr21 6200513 6200813 -28706757 + AluJb SINE Alu 1 303 -9 2396 56 0 23 chr21 6202095 6202400 -28705170 - AluY SINE Alu -13 298 1 520 333 16 16 chr21 6204606 6204849 -28702721 + MLT1J2 LTR MaLR 37 279 -171 737 214 51 39 chr21 6204868 6205141 -28702429 + Charlie4a DNA MER1_type 78 357 -1604 1700 169 43 7 chr21 6205141 6205420 -28702150 + AluJo SINE Alu 1 289 -23 737 214 51 39 chr21 6205420 6205478 -28702092 + Charlie4a DNA MER1_type 357 413 -95 523 249 73 12 chr21 6205699 6205864 -28701706 - MER105 DNA DNA -29 175 1 26 0 0 0 chr21 6206776 6206802 -28700768 + AT_rich Low_complexity Low_complexity 1 26 0 800 241 61 45 chr21 6207026 6207475 -28700095 + MLT2B1 LTR ERVL 4 464 0 1836 116 84 0 chr21 6208944 6209219 -28698351 - AluSx SINE Alu -14 298 1 621 51 0 0 chr21 6209572 6209651 -28697919 + MADE1 DNA Mariner 1 79 -1 575 230 56 31 chr21 6210809 6211005 -28696565 + MLT1J2 LTR MaLR 1 201 -249 333 214 84 71 chr21 6211345 6211499 -28696071 - L1MC4 LINE L1 0 8042 7887 505 275 73 35 chr21 6211510 6211852 -28695718 - L1MC4 LINE L1 -218 7824 7470 13420 199 18 11 chr21 6212395 6213182 -28694388 - L1PB1 LINE L1 -2 6865 6085 2303 104 0 0 chr21 6213182 6213481 -28694089 - AluY SINE Alu -12 299 1 13420 199 18 11 chr21 6213481 6217534 -28690036 - L1PB1 LINE L1 -782 6085 1724 2716 85 95 5 chr21 6217534 6217945 -28689625 - LTR7 LTR ERV1 -2 448 1 13420 199 18 11 chr21 6217945 6218582 -28688988 - L1PB1 LINE L1 -5143 1724 1093 1883 192 12 7 chr21 6218585 6219001 -28688569 - L1PB1 LINE L1 -5817 1046 629 1315 287 36 4 chr21 6219046 6219575 -28687995 - L1PB1 LINE L1 -6312 551 6 2594 42 0 0 chr21 6220023 6220334 -28687236 - AluY SINE Alu 0 311 1 1901 179 10 37 chr21 6220339 6220742 -28686828 + MLT2C1 LTR ERVL 6 397 0 1339 243 34 29 chr21 6221712 6221796 -28685774 - MER63B DNA MER1_type -652 410 328 1812 148 3 30 chr21 6221796 6222093 -28685477 + AluJo SINE Alu 1 289 -23 1339 243 34 29 chr21 6222093 6222416 -28685154 - MER63B DNA MER1_type -734 328 1 259 261 67 101 chr21 6222506 6222549 -28685021 - L2 LINE L2 0 3272 3229 1749 246 20 13 chr21 6222549 6223008 -28684562 + LTR40b LTR ERVL 1 462 0 259 261 67 101 chr21 6223008 6223083 -28684487 - L2 LINE L2 -43 3229 3158 23 54 0 0 chr21 6223113 6223150 -28684420 + AT_rich Low_complexity Low_complexity 1 37 0 844 123 0 8 chr21 6223326 6223456 -28684114 + FLAM_C SINE Alu 2 130 -3 1846 93 6 121 chr21 6224262 6224594 -28682976 + AluSx SINE Alu 1 294 -8 2329 83 0 0 chr21 6225489 6225790 -28681780 + AluY SINE Alu 1 301 -10 13762 22 7 0 chr21 6225951 6228339 -28679231 - L1PA3 LINE L1 -2 6153 3756 29 70 0 0 chr21 6228391 6228448 -28679122 + AT_rich Low_complexity Low_complexity 1 57 0 2414 50 0 0 chr21 6228944 6229226 -28678344 + AluY SINE Alu 30 311 0 232 125 25 0 chr21 6229268 6229308 -28678262 - MER63B DNA MER1_type -395 41 1 738 203 11 103 chr21 6229692 6229802 -28677768 + MER96B DNA MER1_type? 2 121 -296 1377 136 7 61 chr21 6229802 6229992 -28677578 - L1PB2 LINE L1 -2 6149 5977 2563 46 0 10 chr21 6229992 6230299 -28677271 - AluY SINE Alu -7 304 1 1377 136 7 61 chr21 6230299 6230387 -28677183 - L1PB2 LINE L1 -174 5977 5886 738 203 11 103 chr21 6230387 6230547 -28677023 + MER96B DNA MER1_type? 121 247 -170 348 296 44 0 chr21 6231191 6231326 -28676244 - MIR SINE MIR 0 262 122 1062 252 45 0 chr21 6231972 6232238 -28675332 - MLT1A1 LTR MaLR -6 359 82 1116 216 29 22 chr21 6232242 6232515 -28675055 + MER21B LTR ERV1 156 430 -433 22 0 0 0 chr21 6234258 6234280 -28673290 + AT_rich Low_complexity Low_complexity 1 22 0 422 306 89 60 chr21 6234358 6234694 -28672876 - L1M4 LINE L1 -1391 4755 4410 2645 193 10 25 chr21 6234814 6235337 -28672233 + MLT2B2 LTR ERVL 1 515 0 698 278 57 5 chr21 6235475 6235669 -28671901 - LTR33 LTR ERVL -317 204 1 255 61 0 0 chr21 6235732 6235765 -28671805 + (TG)n Simple_repeat Simple_repeat 2 34 0 716 260 20 15 chr21 6236076 6236162 -28671408 + MIR SINE MIR 66 150 -112 1780 147 87 35 chr21 6236162 6236508 -28671062 - THE1B LTR MaLR 0 364 1 11719 97 8 4 chr21 6236508 6238083 -28669487 - THE1B-int LTR MaLR 0 1580 1 2427 127 5 19 chr21 6238083 6238452 -28669118 - THE1B LTR MaLR 0 364 1 716 260 20 15 chr21 6238452 6238559 -28669011 + MIR SINE MIR 149 262 0 283 161 65 0 chr21 6238828 6238886 -28668684 + MLT1J LTR MaLR 106 167 -344 1209 217 15 51 chr21 6238886 6239222 -28668348 - MLT2D LTR ERVL 0 414 91 626 322 47 16 chr21 6239253 6239570 -28668000 + MLT1J2 LTR MaLR 121 447 -3 1539 136 11 79 chr21 6240618 6240979 -28666591 - MER4A LTR ERV1 0 664 270 616 102 10 10 chr21 6240993 6241091 -28666479 - MER4A LTR ERV1 -566 98 1 253 252 9 96 chr21 6241172 6241287 -28666283 - MIR SINE MIR -77 185 81 2261 104 0 3 chr21 6241321 6241619 -28665951 - AluSg SINE Alu -13 297 1 2084 126 32 29 chr21 6244258 6244632 -28662938 - THE1C LTR MaLR 0 375 1 294 73 0 0 chr21 6244836 6244877 -28662693 + (CA)n Simple_repeat Simple_repeat 2 42 0 517 133 38 0 chr21 6244881 6244986 -28662584 + (TATG)n Simple_repeat Simple_repeat 2 110 0 345 207 21 11 chr21 6244986 6245080 -28662490 + L1MC4 LINE L1 1995 6981 -1341 212 175 0 0 chr21 6245667 6245707 -28661863 + L2 LINE L2 3273 3312 -1 204 363 89 14 chr21 6246263 6246409 -28661161 - L2 LINE L2 -222 3050 2894 1374 264 41 14 chr21 6247241 6247657 -28659913 + L1PB4 LINE L1 10 436 -6413 352 192 0 68 chr21 6247852 6247925 -28659645 + L1PB4 LINE L1 412 479 -6370 350 232 37 49 chr21 6248103 6248185 -28659385 + L1PB4 LINE L1 402 482 -6367 888 306 95 69 chr21 6248262 6248651 -28658919 + L1PB4 LINE L1 668 1066 -5783 1453 209 11 3 chr21 6249254 6249612 -28657958 + L1PB4 LINE L1 1679 2039 -4809 4903 161 15 18 chr21 6249617 6250577 -28656993 + L1PB4 LINE L1 5648 6610 -248 7828 72 3 2 chr21 6250577 6251545 -28656025 - LTR5 LTR ERVK 0 969 1 4903 161 15 18 chr21 6251545 6251617 -28655953 + L1PB4 LINE L1 6610 6681 -177 2245 109 7 7 chr21 6251617 6251920 -28655650 + AluSc SINE Alu 1 303 -6 4903 161 15 18 chr21 6251920 6252100 -28655470 + L1PB4 LINE L1 6681 6858 0 746 289 8 36 chr21 6253028 6253281 -28654289 - MIR SINE MIR -8 254 9 2243 98 0 26 chr21 6254652 6254959 -28652611 + AluSg SINE Alu 1 299 -11 265 320 39 29 chr21 6255679 6255782 -28651788 - L2 LINE L2 0 3313 3210 192 97 0 0 chr21 6256242 6256273 -28651297 + (TA)n Simple_repeat Simple_repeat 2 32 0 2498 57 0 10 chr21 6256322 6256636 -28650934 - AluY SINE Alu 0 311 1 2287 167 12 2 chr21 6256930 6257350 -28650220 - L1MB1 LINE L1 -1 6167 5744 32 57 0 0 chr21 6257371 6257424 -28650146 + AT_rich Low_complexity Low_complexity 1 53 0 626 262 23 0 chr21 6257817 6257989 -28649581 + MER45A DNA AcHobo 1 176 -2 527 287 57 32 chr21 6257993 6258307 -28649263 + L1ME3A LINE L1 5578 5899 -271 207 0 0 0 chr21 6259145 6259168 -28648402 + (T)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr21 6259486 6259517 -28648053 + AT_rich Low_complexity Low_complexity 1 31 0 1923 168 14 24 chr21 6259568 6259937 -28647633 - MLT1A1 LTR MaLR 0 365 1 2427 131 28 0 chr21 6260081 6260433 -28647137 + THE1B LTR MaLR 1 362 -2 881 264 14 71 chr21 6260531 6260627 -28646943 + MLT2C1 LTR ERVL 1 101 -296 2026 151 140 8 chr21 6260627 6261005 -28646565 + MSTA LTR MaLR 1 428 0 881 264 14 71 chr21 6261005 6261329 -28646241 + MLT2C1 LTR ERVL 101 397 0 2194 291 43 18 chr21 6261375 6262115 -28645455 + L1M3b LINE L1 1 759 -5522 2560 276 36 23 chr21 6262209 6262787 -28644783 + L1M3b LINE L1 617 1186 -5165 2304 77 7 7 chr21 6262787 6263084 -28644486 + AluY SINE Alu 1 297 -14 2560 276 36 23 chr21 6263084 6263890 -28643680 + L1M3b LINE L1 1186 2034 -4317 2165 58 0 11 chr21 6263994 6264270 -28643300 + AluY SINE Alu 1 273 -38 449 151 47 0 chr21 6264272 6264358 -28643212 + L1M1 LINE L1 2920 3009 -4556 1674 204 43 11 chr21 6264362 6264889 -28642681 - L1 LINE L1 -3594 3971 3385 1297 219 9 0 chr21 6264938 6265253 -28642317 + L1M1 LINE L1 4125 4442 -3123 3344 178 44 1 chr21 6265254 6265391 -28642179 + L1PB4 LINE L1 5156 5286 -870 282 29 0 0 chr21 6265391 6265426 -28642144 + (CA)n Simple_repeat Simple_repeat 2 36 0 3344 178 44 1 chr21 6265426 6266165 -28641405 + L1PB4 LINE L1 5286 6154 -2 2739 172 68 3 chr21 6266181 6266814 -28640756 + L1M1 LINE L1 4434 5107 -2458 204 213 0 0 chr21 6267825 6267872 -28639698 + A-rich Low_complexity Low_complexity 1 47 0 347 0 23 0 chr21 6268351 6268394 -28639176 + (CA)n Simple_repeat Simple_repeat 2 45 0 288 0 0 0 chr21 6268966 6268998 -28638572 + (TG)n Simple_repeat Simple_repeat 2 33 0 978 310 69 33 chr21 6269482 6269810 -28637760 + L1MEc LINE L1 995 1310 -5086 1417 176 151 7 chr21 6269810 6270082 -28637488 + AluJo SINE Alu 1 311 -1 978 310 69 33 chr21 6270082 6270602 -28636968 + L1MEc LINE L1 1310 1902 -4494 1882 127 66 33 chr21 6270602 6270964 -28636606 - THE1C LTR MaLR -1 374 1 978 310 69 33 chr21 6270964 6271153 -28636417 + L1MEc LINE L1 1902 2083 -4313 955 215 0 0 chr21 6271178 6271350 -28636220 + FRAM SINE Alu 1 171 -5 1111 251 60 72 chr21 6271352 6271590 -28635980 + L1MEc LINE L1 2107 2346 -3869 2188 109 3 0 chr21 6271590 6271875 -28635695 + AluSg SINE Alu 3 288 -22 1111 251 60 72 chr21 6271875 6272192 -28635378 + L1MEc LINE L1 2346 2623 -3592 2331 171 16 63 chr21 6272193 6272697 -28634873 + MLT2B1 LTR ERVL 1 480 -40 79 44 0 0 chr21 6272697 6272811 -28634759 + AT_rich Low_complexity Low_complexity 1 114 0 842 140 0 42 chr21 6272811 6272954 -28634616 - MLT1A1 LTR MaLR -2 363 227 2348 165 31 10 chr21 6273932 6274345 -28633225 + MSTB LTR MaLR 1 422 -4 1654 164 11 11 chr21 6274375 6274656 -28632914 - MLT1A1 LTR MaLR -2 363 83 1116 154 27 0 chr21 6274702 6274890 -28632680 + MLT2B1 LTR ERVL 1 193 -327 384 102 34 0 chr21 6274895 6274954 -28632616 - MLT1A1 LTR MaLR -273 92 32 262 358 57 39 chr21 6274970 6275352 -28632218 + L2 LINE L2 2456 2887 -427 182 0 64 85 chr21 6275567 6275614 -28631956 + (TAAAAA)n Simple_repeat Simple_repeat 6 51 0 276 387 18 35 chr21 6276042 6276326 -28631244 - L3 LINE CR1 -331 1246 968 21 0 0 0 chr21 6278145 6278166 -28629404 + AT_rich Low_complexity Low_complexity 1 21 0 301 286 26 0 chr21 6278911 6278988 -28628582 + L2 LINE L2 3230 3308 -5 2383 68 0 3 chr21 6280640 6280955 -28626615 + AluY SINE Alu 1 314 0 2313 144 11 3 chr21 6281195 6281556 -28626014 - THE1B LTR MaLR 0 364 1 220 273 0 0 chr21 6282182 6282237 -28625333 + (CA)n Simple_repeat Simple_repeat 1 55 0 22 35 0 0 chr21 6282898 6282927 -28624643 + AT_rich Low_complexity Low_complexity 1 29 0 243 88 0 0 chr21 6283300 6283334 -28624236 + (TCC)n Simple_repeat Simple_repeat 3 36 0 22 0 0 0 chr21 6283767 6283789 -28623781 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 6283884 6283917 -28623653 + AT_rich Low_complexity Low_complexity 1 33 0 2063 120 10 0 chr21 6284750 6285042 -28622528 - AluSx SINE Alu -17 295 1 182 298 0 0 chr21 6285667 6285714 -28621856 - L2 LINE L2 -8 3305 3259 192 393 0 0 chr21 6286509 6286570 -28621000 + L2 LINE L2 3205 3265 -7 940 92 0 0 chr21 6288459 6288590 -28618980 - L1PB1 LINE L1 0 6151 6021 6993 58 5 0 chr21 6288598 6289491 -28618079 - L1PA7 LINE L1 -3 6151 5255 12618 85 12 5 chr21 6289489 6291248 -28616322 + L1PA7 LINE L1 3467 5239 -907 2332 80 6 16 chr21 6291264 6291576 -28615994 - AluY SINE Alu 0 311 3 1953 139 4 0 chr21 6292121 6292428 -28615142 - AluSg SINE Alu 0 308 1 246 119 75 0 chr21 6292778 6292845 -28614725 + (TA)n Simple_repeat Simple_repeat 1 72 0 716 115 0 0 chr21 6292904 6293008 -28614562 + AluSg1 SINE Alu 1 104 -205 1869 121 99 10 chr21 6293008 6293321 -28614249 + L1PA15 LINE L1 5825 6165 0 215 336 40 80 chr21 6293360 6293610 -28613960 + L2 LINE L2 2813 3052 -220 1307 158 10 0 chr21 6293948 6294157 -28613413 + AluSg1 SINE Alu 100 310 0 22 70 0 0 chr21 6294557 6294600 -28612970 + AT_rich Low_complexity Low_complexity 1 43 0 343 295 41 8 chr21 6294944 6295066 -28612504 - MIR SINE MIR -40 222 97 2197 83 20 20 chr21 6295217 6295518 -28612052 - AluSc SINE Alu -8 301 1 1941 92 0 11 chr21 6295539 6295799 -28611771 + AluSc SINE Alu 45 301 -8 2408 217 32 40 chr21 6295848 6296000 -28611570 - MLT1E2 LTR MaLR 0 626 474 2242 98 0 0 chr21 6296000 6296295 -28611275 + AluSg SINE Alu 1 295 -15 2468 71 3 0 chr21 6296295 6296605 -28610965 + AluY SINE Alu 1 311 0 2408 217 32 40 chr21 6296605 6297082 -28610488 - MLT1E2 LTR MaLR -150 476 1 257 246 237 61 chr21 6298743 6298857 -28608713 + MIR SINE MIR 20 153 -109 22 0 0 0 chr21 6299250 6299272 -28608298 + AT_rich Low_complexity Low_complexity 1 22 0 2025 99 0 65 chr21 6300552 6300875 -28606695 - AluSx SINE Alu -2 310 9 309 335 60 28 chr21 6301300 6301584 -28605986 - L1MC/D LINE L1 -2404 5591 5299 3207 182 87 35 chr21 6301597 6302332 -28605238 - L1MA10 LINE L1 -9 6325 5553 398 291 30 20 chr21 6302895 6303098 -28604472 - L1MC/D LINE L1 -1486 4660 4456 1009 178 7 4 chr21 6303644 6303960 -28603610 - MLT1A1 LTR MaLR -11 354 4 25 65 0 0 chr21 6303984 6304030 -28603540 + AT_rich Low_complexity Low_complexity 1 46 0 4814 73 3 0 chr21 6304035 6304665 -28602905 - L1PA7 LINE L1 -11 6143 5512 241 210 89 73 chr21 6304938 6305062 -28602508 + L3 LINE CR1 825 950 -627 5249 22 0 0 chr21 6306256 6306857 -28600713 - L1PA3 LINE L1 0 6155 5555 35 24 0 0 chr21 6308028 6308070 -28599500 + AT_rich Low_complexity Low_complexity 1 42 0 243 222 12 37 chr21 6308072 6308153 -28599417 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 5842 158 22 25 chr21 6308536 6310575 -28596995 - L1MA4 LINE L1 0 7002 4949 225 0 0 0 chr21 6310577 6310602 -28596968 + (T)n Simple_repeat Simple_repeat 1 25 0 1351 114 10 0 chr21 6310618 6310811 -28596759 - AluSp SINE Alu -118 195 1 1342 164 36 29 chr21 6310812 6311068 -28596502 - L1MA4 LINE L1 -1904 4944 4684 4395 115 3 3 chr21 6311068 6311727 -28595843 - L1PA13 LINE L1 0 6163 5505 1314 207 17 0 chr21 6311727 6312075 -28595495 - L1MA4 LINE L1 -2754 4094 3741 2238 291 80 57 chr21 6312080 6313470 -28594100 - L1MA4 LINE L1 -5473 1376 8 197 235 139 70 chr21 6314226 6314341 -28593229 + L2 LINE L2 3127 3249 -23 340 335 68 31 chr21 6314544 6314705 -28592865 + L3 LINE CR1 1354 1520 -57 2505 104 0 30 chr21 6315382 6315746 -28591824 - THE1A LTR MaLR 0 355 3 11636 96 5 0 chr21 6315748 6317320 -28590250 - THE1A-int LTR MaLR 0 1580 1 2508 110 3 3 chr21 6317320 6317675 -28589895 - THE1A LTR MaLR 0 355 1 207 0 0 0 chr21 6319633 6319656 -28587914 + (T)n Simple_repeat Simple_repeat 1 23 0 22 56 0 0 chr21 6320297 6320333 -28587237 + AT_rich Low_complexity Low_complexity 1 36 0 2561 30 7 3 chr21 6320701 6321006 -28586564 + AluY SINE Alu 1 306 -5 63 26 0 0 chr21 6321226 6321303 -28586267 + AT_rich Low_complexity Low_complexity 1 77 0 288 238 25 25 chr21 6321303 6321383 -28586187 - MIR SINE MIR 0 262 183 1958 170 128 0 chr21 6321563 6321939 -28585631 - LTR64 LTR ERVK -29 529 106 213 339 74 25 chr21 6322563 6322684 -28584886 + MIR SINE MIR 70 196 -66 186 159 0 114 chr21 6322892 6322936 -28584634 - MIR SINE MIR -111 151 113 887 255 20 24 chr21 6322980 6323227 -28584343 + MIR SINE MIR 6 251 -11 1186 93 116 28 chr21 6323632 6323737 -28583833 + L1PA10 LINE L1 5934 6028 -140 2094 135 8 42 chr21 6323737 6324114 -28583456 + THE1B LTR MaLR 1 364 0 1186 93 116 28 chr21 6324114 6324224 -28583346 + L1PA10 LINE L1 6028 6168 0 2399 158 62 58 chr21 6326006 6326168 -28581402 - L1MA10 LINE L1 0 6334 6174 210 37 0 0 chr21 6326168 6326195 -28581375 + (TG)n Simple_repeat Simple_repeat 2 28 0 2399 158 62 58 chr21 6326195 6326565 -28581005 - L1MA10 LINE L1 -160 6174 5800 25 51 0 0 chr21 6327323 6327362 -28580208 + AT_rich Low_complexity Low_complexity 1 39 0 2082 70 0 0 chr21 6327504 6327760 -28579810 + AluY SINE Alu 39 294 -17 1701 35 8 97 chr21 6327928 6328185 -28579385 + AluY SINE Alu 76 309 -2 300 170 75 0 chr21 6329805 6329858 -28577712 - L2 LINE L2 -5 3308 3252 30 45 0 0 chr21 6330933 6330977 -28576593 + AT_rich Low_complexity Low_complexity 1 44 0 789 231 18 0 chr21 6330985 6331154 -28576416 + LTR16C LTR ERVL 320 491 0 2410 87 0 0 chr21 6331495 6331794 -28575776 - AluSx SINE Alu -13 299 1 1871 116 3 14 chr21 6332063 6332348 -28575222 + L1PA16 LINE L1 5719 6000 -166 2156 196 49 0 chr21 6332348 6332756 -28574814 + MSTA LTR MaLR 1 428 0 1308 158 18 0 chr21 6332756 6332978 -28574592 + MSTA-int LTR MaLR 1 226 -1425 2140 136 125 10 chr21 6332978 6333361 -28574209 + MSTA LTR MaLR 1 427 -1 4822 200 31 4 chr21 6333362 6334322 -28573248 + MSTA-int LTR MaLR 1 986 -665 287 118 0 212 chr21 6334329 6334414 -28573156 + MSTA-int LTR MaLR 714 780 -871 4365 127 6 12 chr21 6334409 6335070 -28572500 + MSTA-int LTR MaLR 923 1579 -1 1120 132 162 17 chr21 6335071 6335306 -28572264 + MSTA LTR MaLR 1 269 -159 4676 190 16 11 chr21 6335306 6336163 -28571407 + MSTA-int LTR MaLR 790 1651 0 2361 182 44 0 chr21 6336165 6336572 -28570998 + MSTA LTR MaLR 3 427 -1 341 102 0 0 chr21 6336604 6336653 -28570917 - MADE1 DNA Mariner -30 50 2 1628 128 28 7 chr21 6337196 6337486 -28570084 + L1MA3 LINE L1 6010 6305 0 21 57 0 0 chr21 6337511 6337546 -28570024 + AT_rich Low_complexity Low_complexity 1 35 0 523 309 73 29 chr21 6337581 6337856 -28569714 - MLT1I LTR MaLR -50 359 73 541 247 39 26 chr21 6338520 6338674 -28568896 + MLT1A2 LTR MaLR 1 156 -218 740 145 8 8 chr21 6338682 6338799 -28568771 + FLAM_C SINE Alu 1 117 -16 259 246 14 14 chr21 6338944 6339013 -28568557 - L2 LINE L2 -1061 2253 2185 709 194 0 87 chr21 6339732 6339928 -28567642 + MLT1A2 LTR MaLR 1 179 -195 916 247 65 55 chr21 6339941 6340398 -28567172 - MLT1C LTR MaLR 0 467 1 24 32 0 0 chr21 6343443 6343474 -28564096 + AT_rich Low_complexity Low_complexity 1 31 0 2055 153 8 33 chr21 6343490 6343888 -28563682 - MLT1B LTR MaLR -2 388 1 391 271 90 15 chr21 6343889 6344022 -28563548 + L2 LINE L2 3171 3313 0 1558 204 14 3 chr21 6344855 6345140 -28562430 + AluJo SINE Alu 1 288 -24 1630 211 14 27 chr21 6345537 6345907 -28561663 + MLT1A1 LTR MaLR 1 365 0 272 26 0 26 chr21 6346069 6346107 -28561463 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 501 62 0 0 chr21 6346128 6346193 -28561377 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 371 259 37 74 chr21 6346221 6346275 -28561295 + L2 LINE L2 3176 3230 -83 2368 97 0 6 chr21 6346275 6346586 -28560984 + AluSq SINE Alu 1 309 -4 371 259 37 74 chr21 6346586 6346666 -28560904 + L2 LINE L2 3230 3305 -8 1153 259 86 70 chr21 6347878 6348432 -28559138 + MLT1F1 LTR MaLR 1 564 -3 205 208 139 56 chr21 6348752 6348824 -28558746 + L3 LINE CR1 373 450 -1127 1372 157 35 7 chr21 6349927 6350213 -28557357 + L1MA8 LINE L1 5993 6286 -5 539 256 23 40 chr21 6350280 6350456 -28557114 + ERVL LTR ERVL 2291 2463 -3301 681 329 91 15 chr21 6350734 6351278 -28556292 - L2 LINE L2 0 3313 2690 4209 270 66 7 chr21 6353052 6354524 -28553046 - L1MEc LINE L1 -4296 1920 108 302 289 55 0 chr21 6355756 6355884 -28551686 - L1MEc LINE L1 -4856 1540 1406 251 337 66 33 chr21 6355991 6356172 -28551398 + HAL1b LINE L1 406 592 -756 27 49 0 0 chr21 6357642 6357683 -28549887 + AT_rich Low_complexity Low_complexity 1 41 0 393 310 54 16 chr21 6359089 6359273 -28548297 + MIR SINE MIR 18 208 -54 22 0 0 0 chr21 6359818 6359840 -28547730 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr21 6360027 6360055 -28547515 + AT_rich Low_complexity Low_complexity 1 28 0 4471 196 70 22 chr21 6361057 6361577 -28545993 + MER45B DNA AcHobo 1 495 -1086 1956 106 80 40 chr21 6361577 6361927 -28545643 - THE1B LTR MaLR 0 364 1 4471 196 70 22 chr21 6361927 6362399 -28545171 + MER45B DNA AcHobo 495 1040 0 605 354 78 16 chr21 6362715 6363085 -28544485 - L2 LINE L2 0 3313 2921 1058 244 82 53 chr21 6363094 6363498 -28544072 + MLT1C LTR MaLR 1 421 -46 1368 180 32 122 chr21 6363498 6363899 -28543671 + MLT1A1 LTR MaLR 1 365 0 1058 244 82 53 chr21 6363899 6363948 -28543622 + MLT1C LTR MaLR 421 467 0 398 362 86 40 chr21 6363948 6364368 -28543202 - L2 LINE L2 -398 2916 2478 23 0 0 0 chr21 6365275 6365298 -28542272 + AT_rich Low_complexity Low_complexity 1 23 0 2162 155 18 25 chr21 6367355 6367748 -28539822 - MLT1B LTR MaLR 0 390 1 351 303 85 38 chr21 6367773 6367984 -28539586 - L2 LINE L2 -18 3295 3075 569 309 65 78 chr21 6368052 6368719 -28538851 - L2 LINE L2 -419 2895 2238 3516 39 0 2 chr21 6368789 6369220 -28538350 - L1PA7 LINE L1 0 6154 5725 21 0 0 0 chr21 6369264 6369285 -28538285 + AT_rich Low_complexity Low_complexity 1 21 0 325 174 20 60 chr21 6371715 6371864 -28535706 + (TA)n Simple_repeat Simple_repeat 2 144 0 268 250 0 0 chr21 6371995 6372063 -28535507 + (TA)n Simple_repeat Simple_repeat 1 68 0 1495 164 46 7 chr21 6372261 6372542 -28535028 + L1MA7 LINE L1 5776 6067 -224 736 145 72 20 chr21 6372543 6372695 -28534875 + L1MA7 LINE L1 6127 6286 -5 225 403 22 17 chr21 6372762 6372943 -28534627 + L2 LINE L2 870 1051 -2263 646 258 11 0 chr21 6373935 6374121 -28533449 - HAL1 LINE L1 -810 1697 1510 40 79 0 0 chr21 6374160 6374249 -28533321 + AT_rich Low_complexity Low_complexity 1 89 0 821 271 67 38 chr21 6374249 6375074 -28532496 - HAL1 LINE L1 -1050 1457 557 1713 153 28 22 chr21 6375197 6375517 -28532053 - L1MC1 LINE L1 -8 6325 6004 1635 158 7 3 chr21 6375702 6376005 -28531565 - L1MA5 LINE L1 -10 6290 5987 3251 96 38 8 chr21 6376005 6376505 -28531065 + L1MA5 LINE L1 5435 5949 -351 1257 235 35 61 chr21 6376852 6377247 -28530323 + MLT1B LTR MaLR 1 385 -5 1364 86 109 5 chr21 6377359 6377580 -28529990 - L1PA11 LINE L1 0 6174 5931 542 121 0 0 chr21 6377582 6377665 -28529905 + L1PA11 LINE L1 5867 5949 -219 474 349 53 19 chr21 6377706 6378024 -28529546 + L2 LINE L2 2377 2705 -609 1905 144 18 0 chr21 6378033 6378337 -28529233 + AluJb SINE Alu 1 309 0 1201 171 0 14 chr21 6380126 6380337 -28527233 - AluSx SINE Alu -70 242 35 2222 103 0 0 chr21 6380348 6380638 -28526932 + AluSx SINE Alu 5 294 -18 203 229 0 0 chr21 6380736 6380771 -28526799 + polypurine Low_complexity Low_complexity 4 38 0 212 250 0 45 chr21 6381698 6381786 -28525784 + CT-rich Low_complexity Low_complexity 1 84 0 316 258 62 39 chr21 6382132 6382260 -28525310 + L2 LINE L2 3182 3312 -1 919 257 18 37 chr21 6382337 6382609 -28524961 + MLT2B1 LTR ERVL 198 464 -56 253 137 78 0 chr21 6382669 6382720 -28524850 + MLT2B1 LTR ERVL 461 515 0 2050 147 10 70 chr21 6384500 6384915 -28522655 + MLT1B LTR MaLR 1 390 0 2174 182 34 43 chr21 6385075 6385543 -28522027 + MLT1C LTR MaLR 3 466 -1 23 0 0 0 chr21 6385922 6385945 -28521625 + AT_rich Low_complexity Low_complexity 1 23 0 2298 108 0 0 chr21 6386050 6386357 -28521213 - AluSq SINE Alu -6 307 1 637 274 38 5 chr21 6386749 6386935 -28520635 - LTR40b LTR ERVL -93 369 178 209 83 28 0 chr21 6387382 6387418 -28520152 + (TA)n Simple_repeat Simple_repeat 2 38 0 918 139 0 0 chr21 6387636 6387765 -28519805 - AluJo SINE Alu -178 134 6 206 200 0 0 chr21 6387777 6387812 -28519758 + polypyrimidine Low_complexity Low_complexity 2 36 0 518 108 12 0 chr21 6387812 6387895 -28519675 + (TTCCC)n Simple_repeat Simple_repeat 1 84 0 232 204 19 0 chr21 6387901 6387955 -28519615 + T-rich Low_complexity Low_complexity 5 59 0 798 83 58 0 chr21 6387974 6388094 -28519476 + L1PB1 LINE L1 6022 6148 -3 398 239 11 0 chr21 6388366 6388454 -28519116 - LTR40a LTR ERVL -275 244 156 2102 131 3 0 chr21 6389007 6389305 -28518265 - AluSg SINE Alu -11 299 1 197 348 36 22 chr21 6389306 6389444 -28518126 + L2 LINE L2 2617 2756 -558 201 60 0 90 chr21 6389563 6389630 -28517940 + (CATTT)n Simple_repeat Simple_repeat 1 61 0 29 60 0 0 chr21 6391746 6391796 -28515774 + AT_rich Low_complexity Low_complexity 1 50 0 481 283 26 7 chr21 6393307 6393459 -28514111 + MIR SINE MIR 30 184 -78 1693 246 3 6 chr21 6393603 6393969 -28513601 + MLT1A1 LTR MaLR 1 365 0 2521 163 41 19 chr21 6393975 6394579 -28512991 + MLT1A1-int LTR MaLR 6 711 -1024 601 279 56 42 chr21 6394594 6394832 -28512738 + MLT1A1-int LTR MaLR 1016 1303 -432 1872 226 25 30 chr21 6394870 6395343 -28512227 + MLT1A1-int LTR MaLR 1264 1734 -1 1971 167 28 31 chr21 6395345 6395705 -28511865 + MLT1A1 LTR MaLR 2 360 -5 2611 93 3 35 chr21 6395981 6396357 -28511213 - THE1B LTR MaLR 0 364 1 572 277 75 0 chr21 6396638 6396826 -28510744 - MIR SINE MIR -56 206 5 1855 170 27 16 chr21 6396839 6397215 -28510355 - L1PB4 LINE L1 0 6858 6479 188 101 50 59 chr21 6397221 6397340 -28510230 + (TA)n Simple_repeat Simple_repeat 1 118 0 253 165 46 46 chr21 6397355 6397464 -28510106 + (TA)n Simple_repeat Simple_repeat 1 109 0 717 177 4 9 chr21 6397468 6397608 -28509962 - L1P2 LINE L1 -348 5806 5664 303 247 0 0 chr21 6397589 6397662 -28509908 + L1P4 LINE L1 5664 5736 -432 7062 195 10 16 chr21 6397706 6399259 -28508311 - L1PB4 LINE L1 -512 6346 4807 2315 109 0 0 chr21 6399259 6399562 -28508008 + AluSq SINE Alu 1 303 -10 7062 195 10 16 chr21 6399562 6399878 -28507692 - L1PB4 LINE L1 -2051 4807 4491 1785 159 133 18 chr21 6399878 6400262 -28507308 + MSTA LTR MaLR 1 428 0 9232 140 27 36 chr21 6400264 6401845 -28505725 + MSTA-int LTR MaLR 3 1569 -11 1237 181 107 22 chr21 6401846 6402116 -28505454 + MSTA LTR MaLR 3 295 -133 7276 229 32 9 chr21 6402146 6402781 -28504789 - L1PB4 LINE L1 -3012 3836 3217 369 0 0 0 chr21 6402781 6402822 -28504748 + (TG)n Simple_repeat Simple_repeat 1 41 0 7276 229 32 9 chr21 6402822 6404900 -28502670 - L1PB4 LINE L1 -3631 3217 1060 1870 142 144 21 chr21 6405653 6406034 -28501536 - MSTA LTR MaLR 0 428 1 469 333 54 6 chr21 6406244 6406412 -28501158 - L1PB4 LINE L1 -6399 450 275 23 54 0 0 chr21 6407156 6407193 -28500377 + AT_rich Low_complexity Low_complexity 1 37 0 407 337 37 6 chr21 6408444 6408607 -28498963 + HAL1 LINE L1 1096 1263 -1244 3793 219 14 27 chr21 6408639 6409482 -28498088 + L1MA2 LINE L1 17 848 -6717 11860 158 24 11 chr21 6409457 6412706 -28494864 + L1MA2 LINE L1 1097 4304 -3419 2100 150 0 0 chr21 6412706 6413012 -28494558 + AluSx SINE Alu 3 308 -4 11860 158 24 11 chr21 6413012 6413830 -28493740 + L1MA2 LINE L1 4304 5110 -2613 5215 156 38 30 chr21 6413830 6414893 -28492677 + MER11C LTR ERVK 1 1071 0 11860 158 24 11 chr21 6414893 6417252 -28490318 + L1MA2 LINE L1 5110 7723 0 34 24 0 0 chr21 6417253 6417294 -28490276 + AT_rich Low_complexity Low_complexity 1 41 0 369 333 78 0 chr21 6417329 6417521 -28490049 + HAL1 LINE L1 1340 1546 -961 306 230 62 101 chr21 6417832 6418041 -28489529 + HAL1 LINE L1 1948 2148 -359 194 392 0 0 chr21 6418762 6418836 -28488734 + MIR3 SINE MIR 86 159 -49 2210 120 22 27 chr21 6418871 6419237 -28488333 + THE1B LTR MaLR 1 364 0 1652 289 51 8 chr21 6421298 6421786 -28485784 - MLT1H1 LTR MaLR -2 553 45 1935 124 79 25 chr21 6422050 6422404 -28485166 + THE1C LTR MaLR 1 373 -2 461 261 39 20 chr21 6423430 6423583 -28483987 + MER5B DNA MER1_type 1 156 -22 2318 97 3 3 chr21 6424348 6424659 -28482911 - AluY SINE Alu 0 311 1 635 333 19 26 chr21 6424937 6425246 -28482324 + HERVL LTR ERVL 2284 2590 -3064 256 279 12 23 chr21 6425519 6425605 -28481965 + HERVL LTR ERVL 3776 3860 -1904 269 301 21 32 chr21 6426260 6426353 -28481217 + HERVL LTR ERVL 4859 4950 -535 315 0 0 0 chr21 6426702 6426737 -28480833 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 6427556 6427577 -28479993 + AT_rich Low_complexity Low_complexity 1 21 0 646 281 22 5 chr21 6428164 6428349 -28479221 + MLT1H1 LTR MaLR 25 212 -343 7104 121 17 6 chr21 6430104 6431246 -28476324 + L1MA1 LINE L1 4467 5639 -663 2005 131 147 26 chr21 6431246 6431627 -28475943 - MSTA LTR MaLR 0 428 2 7104 121 17 6 chr21 6431627 6432299 -28475271 + L1MA1 LINE L1 5639 6302 0 1902 102 69 7 chr21 6432325 6432599 -28474971 - AluSq SINE Alu -21 292 2 286 363 84 23 chr21 6433484 6433746 -28473824 + L2 LINE L2 211 488 -2826 190 325 161 49 chr21 6433734 6434162 -28473408 + L2 LINE L2 1865 2340 -974 260 324 0 0 chr21 6435439 6435513 -28472057 - L2 LINE L2 -63 3209 3136 284 30 0 91 chr21 6435544 6435610 -28471960 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 195 303 11 67 chr21 6436061 6436150 -28471420 - L2 LINE L2 -1 3312 3229 514 288 7 0 chr21 6436933 6437086 -28470484 - L1MA10 LINE L1 -11 6323 6170 237 262 66 0 chr21 6437631 6437692 -28469878 - MIR3 SINE MIR -6 202 138 682 281 84 34 chr21 6438980 6439054 -28468516 + L2 LINE L2 2151 2220 -1094 1331 94 133 0 chr21 6439054 6439257 -28468313 + MER30 DNA MER1_type 1 230 0 682 281 84 34 chr21 6439257 6439502 -28468068 + L2 LINE L2 2220 2486 -828 1515 172 20 40 chr21 6441073 6441282 -28466288 + LTR53 LTR ERVL 1 204 -315 1275 205 72 61 chr21 6441282 6441673 -28465897 - MSTD LTR MaLR 0 396 2 1515 172 20 40 chr21 6441673 6441765 -28465805 + LTR53 LTR ERVL 204 296 -223 1433 72 6 6 chr21 6441767 6441947 -28465623 + AluSq SINE Alu 3 182 -131 891 252 69 0 chr21 6441957 6442159 -28465411 + LTR53 LTR ERVL 281 496 -23 200 351 65 45 chr21 6442942 6443096 -28464474 + MIR SINE MIR 62 218 -44 248 330 50 20 chr21 6443141 6443241 -28464329 - L2 LINE L2 -2 3270 3168 237 22 0 67 chr21 6443430 6443475 -28464095 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 1052 109 0 0 chr21 6443475 6443613 -28463957 - AluSg/x SINE Alu -27 283 146 1147 120 16 16 chr21 6443707 6443899 -28463671 + Tigger1 DNA MER2_type 1900 2091 -327 623 206 79 16 chr21 6443899 6444025 -28463545 + FRAM SINE Alu 20 153 -23 1914 175 9 3 chr21 6444025 6444357 -28463213 + Tigger1 DNA MER2_type 2084 2417 -1 651 134 0 55 chr21 6444359 6444486 -28463084 - L1 LINE L1 -1542 4604 4485 535 186 25 103 chr21 6445007 6445211 -28462359 + L1MB7 LINE L1 5989 6176 -8 476 269 5 75 chr21 6445214 6445415 -28462155 + L1MC5 LINE L1 6727 6913 -1048 261 0 0 0 chr21 6445537 6445566 -28462004 + (T)n Simple_repeat Simple_repeat 1 29 0 644 223 23 0 chr21 6445567 6445697 -28461873 - MLT1E LTR MaLR -47 546 414 810 194 12 0 chr21 6445722 6445882 -28461688 + L1M4c LINE L1 1221 1382 -5002 2449 65 13 3 chr21 6445883 6446224 -28461346 + AluY SINE Alu 1 344 0 27 49 0 0 chr21 6446909 6446950 -28460620 + AT_rich Low_complexity Low_complexity 1 41 0 414 39 0 0 chr21 6447757 6447809 -28459761 + (TG)n Simple_repeat Simple_repeat 1 52 0 591 277 25 0 chr21 6448029 6448188 -28459382 + MIR SINE MIR 100 262 0 896 172 22 27 chr21 6448776 6448969 -28458601 - MLT1B LTR MaLR -2 384 173 382 48 0 32 chr21 6448971 6449034 -28458536 + (GA)n Simple_repeat Simple_repeat 2 62 0 572 161 84 71 chr21 6449045 6449200 -28458370 - MLT1B LTR MaLR -204 161 5 612 107 29 0 chr21 6449945 6450048 -28457522 - L1PA4 LINE L1 0 6155 6050 293 219 78 0 chr21 6450957 6451021 -28456549 + MLT1I LTR MaLR 107 175 -234 1091 257 68 25 chr21 6451357 6451816 -28455754 + LTR40a LTR ERVL 19 517 -2 203 61 30 0 chr21 6451853 6451886 -28455684 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 2218 127 0 0 chr21 6453691 6453998 -28453572 + AluSc SINE Alu 1 307 -2 233 82 0 82 chr21 6454565 6454626 -28452944 + LTR66 LTR ERVL 158 213 -397 187 211 14 14 chr21 6454626 6454697 -28452873 + (CATA)n Simple_repeat Simple_repeat 2 72 0 215 188 50 100 chr21 6458086 6458166 -28449404 + MIR SINE MIR 86 161 -101 30 59 0 0 chr21 6459133 6459184 -28448386 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr21 6462102 6462131 -28445439 + AT_rich Low_complexity Low_complexity 1 29 0 2521 40 3 3 chr21 6463019 6463322 -28444248 + AluY SINE Alu 1 303 -8 2132 85 3 33 chr21 6463806 6463827 -28443743 - AluY SINE Alu 0 311 291 181 0 0 0 chr21 6463827 6463847 -28443723 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2132 85 3 33 chr21 6463847 6464130 -28443440 - AluY SINE Alu -20 291 12 2209 156 5 13 chr21 6464187 6464565 -28443005 + THE1C LTR MaLR 1 375 0 839 173 7 27 chr21 6465470 6465620 -28441950 - MER58B DNA MER1_type 0 341 195 382 329 64 30 chr21 6465640 6465874 -28441696 + MLT1L LTR MaLR 22 263 -352 3016 128 17 12 chr21 6467727 6468322 -28439248 - MER4E LTR ERV1 0 779 1 651 265 15 20 chr21 6468324 6468528 -28439042 - MLT1A1 LTR MaLR -76 289 87 3444 208 66 63 chr21 6468535 6468669 -28438901 + MER21A LTR ERV1 30 162 -769 2309 101 3 0 chr21 6468669 6468977 -28438593 + AluSg1 SINE Alu 1 309 0 3444 208 66 63 chr21 6468977 6469735 -28437835 + MER21A LTR ERV1 162 925 -6 500 151 70 0 chr21 6469744 6469830 -28437740 - MLT1A1 LTR MaLR -278 96 5 417 20 0 0 chr21 6469853 6469903 -28437667 + (TG)n Simple_repeat Simple_repeat 1 50 0 1460 247 84 18 chr21 6470159 6470684 -28436886 - MLT1E LTR MaLR -2 591 1 1715 243 7 41 chr21 6470921 6471358 -28436212 - MLT1E2 LTR MaLR 0 626 205 276 264 49 62 chr21 6471334 6471478 -28436092 - MLT1J1 LTR MaLR -372 254 113 482 218 24 24 chr21 6471481 6471605 -28435965 + MER34 LTR ERV1 10 133 -409 436 232 129 79 chr21 6471656 6471897 -28435673 - MLT1J1 LTR MaLR -8 438 186 353 160 223 53 chr21 6472506 6472600 -28434970 - MLT1J1 LTR MaLR -514 110 1 427 226 0 20 chr21 6474165 6474267 -28433303 - L1 LINE L1 -985 5161 5062 44 35 0 0 chr21 6474316 6474374 -28433196 + AT_rich Low_complexity Low_complexity 1 58 0 729 245 88 20 chr21 6474561 6474865 -28432705 - MLT1G LTR MaLR -14 576 223 2388 100 0 0 chr21 6476420 6476731 -28430839 + AluSq SINE Alu 1 311 -2 778 155 171 36 chr21 6476930 6477123 -28430447 + MER20 DNA MER1_type 1 219 0 1479 245 55 36 chr21 6477460 6477954 -28429616 + MLT1D LTR MaLR 3 505 0 468 355 29 0 chr21 6477967 6478139 -28429431 - MIR SINE MIR -67 195 19 6261 82 19 5 chr21 6478197 6479083 -28428487 - L1PA13 LINE L1 0 6163 5265 420 221 64 105 chr21 6479764 6479936 -28427634 - L1ME3A LINE L1 -12 6158 5994 282 245 0 0 chr21 6479965 6480018 -28427552 - L1ME3A LINE L1 -180 5990 5938 1592 182 4 4 chr21 6480018 6480282 -28427288 - MLT1C LTR MaLR 0 467 204 305 47 23 0 chr21 6480282 6480325 -28427245 + (TC)n Simple_repeat Simple_repeat 2 45 0 1039 198 0 14 chr21 6480340 6480547 -28427023 - MLT1C LTR MaLR -263 204 1 715 229 0 0 chr21 6480674 6480805 -28426765 - FLAM_A SINE Alu -1 132 2 430 223 18 9 chr21 6480920 6481032 -28426538 - L1ME3A LINE L1 -394 5776 5664 22 56 0 0 chr21 6481439 6481475 -28426095 + AT_rich Low_complexity Low_complexity 1 36 0 361 195 69 23 chr21 6482417 6482504 -28425066 + MIR SINE MIR 102 192 -70 624 306 50 73 chr21 6482506 6482873 -28424697 + L2 LINE L2 2219 2578 -736 905 241 38 5 chr21 6482873 6483085 -28424485 - MER20 DNA MER1_type 0 219 1 624 306 50 73 chr21 6483085 6483113 -28424457 + L2 LINE L2 2578 2605 -709 597 217 51 0 chr21 6483291 6483429 -28424141 - MLT1G1 LTR MaLR -9 586 442 617 332 39 36 chr21 6483443 6483723 -28423847 - MLT1G1 LTR MaLR -314 281 1 1504 268 85 39 chr21 6483782 6484405 -28423165 - MLT1E1 LTR MaLR 0 654 3 28 48 0 0 chr21 6484526 6484568 -28423002 + AT_rich Low_complexity Low_complexity 1 42 0 332 292 98 70 chr21 6484599 6484996 -28422574 - L1M4 LINE L1 -2375 3771 3364 405 0 0 0 chr21 6485078 6485123 -28422447 + (TG)n Simple_repeat Simple_repeat 2 46 0 2430 77 0 0 chr21 6485176 6485475 -28422095 - AluY SINE Alu -12 299 1 2118 172 42 36 chr21 6485658 6486202 -28421368 + MLT2A2 LTR ERVL 1 554 0 331 288 25 0 chr21 6486206 6486286 -28421284 - MIR SINE MIR -149 113 32 1780 178 37 12 chr21 6486293 6486866 -28420704 - L1M4 LINE L1 -669 6003 5415 1117 259 55 8 chr21 6486868 6487265 -28420305 - L1M4 LINE L1 -2475 4169 3754 895 248 78 27 chr21 6487291 6488702 -28418868 - L1 LINE L1 -1318 5064 1925 433 350 9 28 chr21 6488717 6488934 -28418636 - L1M4 LINE L1 -4522 2122 1910 4572 214 53 47 chr21 6488941 6489055 -28418515 - L1M4 LINE L1 -5192 1350 1238 2784 22 0 3 chr21 6489055 6489373 -28418197 - AluYb8 SINE Alu -1 317 1 4572 214 53 47 chr21 6489373 6490586 -28416984 - L1M4 LINE L1 -5304 1238 16 1838 241 56 76 chr21 6490606 6491212 -28416358 - MLT1E1 LTR MaLR -4 650 57 426 79 0 0 chr21 6491965 6492028 -28415542 + (TA)n Simple_repeat Simple_repeat 1 63 0 214 204 20 20 chr21 6493137 6493186 -28414384 - L2 LINE L2 0 3313 3265 2170 100 7 3 chr21 6493186 6493477 -28414093 + AluSg SINE Alu 9 300 -10 651 319 86 6 chr21 6493812 6494138 -28413432 - L2 LINE L2 -938 2376 2025 29 28 0 0 chr21 6494912 6494948 -28412622 + AT_rich Low_complexity Low_complexity 1 36 0 2469 150 18 23 chr21 6496270 6496704 -28410866 - Tigger2a DNA MER2_type 0 434 3 525 277 61 7 chr21 6497851 6497999 -28409571 + MIR SINE MIR 107 262 0 1691 179 31 0 chr21 6498018 6498308 -28409262 - AluJb SINE Alu -11 301 3 453 273 93 23 chr21 6498687 6498859 -28408711 + MIR SINE MIR 66 249 -13 2481 185 52 61 chr21 6499115 6499257 -28408313 - L1MB8 LINE L1 -17 6161 6019 2269 67 40 0 chr21 6499257 6499556 -28408014 - AluY SINE Alu 0 311 1 2481 185 52 61 chr21 6499556 6500052 -28407518 - L1MB8 LINE L1 -159 6019 5529 760 163 35 0 chr21 6500270 6500411 -28407159 + L1MA9 LINE L1 6167 6312 0 3898 61 2 2 chr21 6502890 6503396 -28404174 - L1PA7 LINE L1 0 6154 5649 1883 191 22 25 chr21 6503526 6503892 -28403678 - MLT1A1 LTR MaLR 0 365 1 338 326 47 8 chr21 6504068 6504197 -28403373 - MLT1K LTR MaLR -302 286 153 26 0 0 0 chr21 6504262 6504288 -28403282 + AT_rich Low_complexity Low_complexity 1 26 0 197 291 97 29 chr21 6505384 6505487 -28402083 + L2 LINE L2 1307 1416 -1898 355 306 113 26 chr21 6505864 6506093 -28401477 + L2 LINE L2 1860 2108 -1206 465 302 8 0 chr21 6506169 6506298 -28401272 + L2 LINE L2 2243 2372 -942 2039 156 58 67 chr21 6506606 6507055 -28400515 - MER65A LTR ERV1 0 445 1 4846 242 84 45 chr21 6507271 6507496 -28400074 + Charlie6 DNA MER1_type 162 377 -3123 2423 92 0 0 chr21 6507496 6507801 -28399769 - AluSx SINE Alu -7 305 1 4846 242 84 45 chr21 6507801 6509341 -28398229 + Charlie6 DNA MER1_type 377 1995 -1505 861 215 5 5 chr21 6509343 6509543 -28398027 - L1MB8 LINE L1 -692 5476 5277 1342 172 0 19 chr21 6509546 6509807 -28397763 + L1MB1 LINE L1 5873 6128 -40 4067 211 88 31 chr21 6509814 6511205 -28396365 + Charlie6 DNA MER1_type 1993 3500 0 2156 107 0 20 chr21 6511280 6511632 -28395938 + AluSg SINE Alu 1 310 0 538 307 59 77 chr21 6511747 6512458 -28395112 + L2 LINE L2 2379 3075 -238 842 158 27 22 chr21 6512497 6512680 -28394890 - L1MA8 LINE L1 -12 6279 6096 2413 130 14 69 chr21 6512689 6512895 -28394675 - L1MA8 LINE L1 -2 6289 6073 378 0 0 0 chr21 6512895 6512937 -28394633 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2232 85 0 0 chr21 6512937 6513220 -28394350 - AluY SINE Alu -28 283 1 2413 130 14 69 chr21 6513220 6513505 -28394065 - L1MA8 LINE L1 -216 6075 5824 442 225 50 115 chr21 6513515 6513715 -28393855 + L2 LINE L2 3109 3295 -18 334 194 14 14 chr21 6513883 6513955 -28393615 + MIR3 SINE MIR 119 190 -18 1760 146 40 63 chr21 6514624 6515021 -28392549 + L1MA9 LINE L1 5923 6310 -2 22 56 0 0 chr21 6515062 6515098 -28392472 + AT_rich Low_complexity Low_complexity 1 36 0 1945 133 3 16 chr21 6515195 6515503 -28392067 + AluSx SINE Alu 1 304 -8 3727 196 56 16 chr21 6517176 6518013 -28389557 - L1MC2 LINE L1 -11 6333 5463 1421 237 68 5 chr21 6518559 6518955 -28388615 + MLT1C LTR MaLR 39 459 -8 23 0 0 0 chr21 6519186 6519209 -28388361 + AT_rich Low_complexity Low_complexity 1 23 0 2419 66 0 3 chr21 6519667 6519971 -28387599 - AluY SINE Alu -8 303 1 286 240 125 10 chr21 6520195 6520291 -28387279 + MLT1A2 LTR MaLR 66 172 -218 937 198 6 11 chr21 6520373 6520550 -28387020 + MLT1A2 LTR MaLR 199 374 0 21 0 0 0 chr21 6521333 6521354 -28386216 + AT_rich Low_complexity Low_complexity 1 21 0 2216 160 20 2 chr21 6522935 6523329 -28384241 - L1 LINE L1 -1972 5593 5193 1047 242 14 0 chr21 6523321 6523602 -28383968 - L1 LINE L1 -2990 4575 4291 1195 130 0 0 chr21 6523604 6523773 -28383797 - AluSg/x SINE Alu -13 297 129 20984 151 35 30 chr21 6523773 6524730 -28382840 - L1 LINE L1 -3267 4298 3347 320 0 25 0 chr21 6524730 6524770 -28382800 + (TTA)n Simple_repeat Simple_repeat 3 43 0 3130 39 3 0 chr21 6524770 6525151 -28382419 - L1PA6 LINE L1 -18 6136 5755 20984 151 35 30 chr21 6525151 6528440 -28379130 - L1 LINE L1 -4217 3348 18 955 275 111 70 chr21 6528440 6529001 -28378569 + L2 LINE L2 2436 3011 -302 294 50 0 0 chr21 6529008 6529048 -28378522 + (CA)n Simple_repeat Simple_repeat 2 41 0 481 278 49 44 chr21 6529060 6529265 -28378305 + L2 LINE L2 3108 3313 0 26 0 0 0 chr21 6530358 6530384 -28377186 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr21 6532907 6532928 -28374642 + AT_rich Low_complexity Low_complexity 1 21 0 222 312 0 0 chr21 6533922 6533999 -28373571 + CT-rich Low_complexity Low_complexity 3 79 0 3774 170 10 10 chr21 6534015 6534476 -28373094 - L1MA4 LINE L1 -11 6991 6528 1987 127 49 35 chr21 6534476 6534845 -28372725 - THE1C LTR MaLR -1 374 1 3774 170 10 10 chr21 6534845 6535089 -28372481 - L1MA4 LINE L1 -473 6529 6286 2283 147 3 3 chr21 6535090 6535465 -28372105 - THE1C LTR MaLR 0 375 1 9571 110 70 33 chr21 6535470 6536988 -28370582 - THE1C-int LTR MaLR -6 1574 1 2377 131 11 8 chr21 6536988 6537362 -28370208 - THE1C LTR MaLR 0 375 1 1950 153 9 15 chr21 6537362 6537980 -28369590 - L1MA4 LINE L1 -713 6289 5673 5879 201 36 6 chr21 6537980 6539559 -28368011 - L1MA4 LINE L1 -3787 3061 1427 521 356 91 82 chr21 6539573 6540047 -28367523 - L1MA4 LINE L1 -5730 1119 569 1637 282 19 44 chr21 6540177 6540719 -28366851 - L1MA4 LINE L1 -6320 529 2 186 71 0 0 chr21 6541181 6541209 -28366361 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 262 183 77 0 chr21 6541621 6541692 -28365878 + MLT1I LTR MaLR 326 450 0 565 259 42 48 chr21 6542129 6542318 -28365252 + MIR SINE MIR 33 220 -42 1901 151 7 0 chr21 6544174 6544465 -28363105 - AluSx SINE Alu -19 293 1 27 29 0 0 chr21 6544530 6544564 -28363006 + AT_rich Low_complexity Low_complexity 1 34 0 2021 157 46 6 chr21 6544801 6545152 -28362418 - MLT1A1 LTR MaLR 0 365 1 182 348 37 55 chr21 6545458 6545622 -28361948 + MIR SINE MIR 53 213 -49 22 23 0 45 chr21 6550132 6550156 -28357414 + AT_rich Low_complexity Low_complexity 1 24 -18 1640 178 54 9 chr21 6550156 6550505 -28357065 - MLT1A1 LTR MaLR 0 365 1 22 23 0 45 chr21 6550505 6550524 -28357046 + AT_rich Low_complexity Low_complexity 24 42 0 339 25 0 0 chr21 6550809 6550849 -28356721 + (TA)n Simple_repeat Simple_repeat 2 41 0 1226 157 0 0 chr21 6550868 6551126 -28356444 - L1MA7 LINE L1 -61 6230 5867 952 215 56 24 chr21 6551150 6551401 -28356169 + MIR SINE MIR 4 262 0 21 0 0 0 chr21 6553239 6553260 -28354310 + AT_rich Low_complexity Low_complexity 1 21 0 2210 141 13 19 chr21 6553892 6554269 -28353301 - THE1C LTR MaLR 0 375 1 220 217 67 17 chr21 6554746 6554806 -28352764 - L2 LINE L2 -10 3303 3241 2286 114 11 8 chr21 6556100 6556452 -28351118 - THE1A LTR MaLR -2 353 1 203 340 0 0 chr21 6557793 6557846 -28349724 + polypurine Low_complexity Low_complexity 2 54 0 591 172 164 0 chr21 6561414 6561536 -28346034 - FRAM SINE Alu -16 160 19 830 101 32 18 chr21 6566451 6566671 -28340899 + (TA)n Simple_repeat Simple_repeat 1 223 0 421 125 38 12 chr21 6566671 6566751 -28340819 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 680 79 76 0 chr21 6566762 6567018 -28340552 + (TA)n Simple_repeat Simple_repeat 1 275 0 326 278 11 0 chr21 6567540 6567630 -28339940 + MIR SINE MIR 1 91 -171 219 304 89 37 chr21 6568004 6568139 -28339431 - MIR SINE MIR -118 144 3 43 35 0 0 chr21 6568292 6568349 -28339221 + AT_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chr21 6568412 6568462 -28339108 + AT_rich Low_complexity Low_complexity 1 50 0 26 88 0 0 chr21 6568779 6568847 -28338723 + AT_rich Low_complexity Low_complexity 1 68 0 262 111 0 69 chr21 6569244 6569349 -28338221 + (TTTA)n Simple_repeat Simple_repeat 1 97 0 29 0 0 0 chr21 6569357 6569386 -28338184 + AT_rich Low_complexity Low_complexity 1 29 0 213 77 6 128 chr21 6569386 6569542 -28338028 + (TTTA)n Simple_repeat Simple_repeat 2 138 0 70 11 0 11 chr21 6569542 6569592 -28337978 + AT_rich Low_complexity Low_complexity 1 51 -36 181 0 0 65 chr21 6569592 6569623 -28337947 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 70 11 0 11 chr21 6569623 6569660 -28337910 + AT_rich Low_complexity Low_complexity 51 87 0 630 93 0 10 chr21 6569718 6569815 -28337755 + L1PA12 LINE L1 6071 6166 -2 21 57 0 0 chr21 6569835 6569870 -28337700 + AT_rich Low_complexity Low_complexity 1 35 0 181 130 65 0 chr21 6572555 6572601 -28334969 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 33 56 0 0 chr21 6575257 6575311 -28332259 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr21 6576339 6576360 -28331210 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 6576516 6576549 -28331021 + AT_rich Low_complexity Low_complexity 1 33 0 201 189 0 19 chr21 6576609 6576662 -28330908 + T-rich Low_complexity Low_complexity 4 55 0 22 35 0 0 chr21 6576763 6576792 -28330778 + AT_rich Low_complexity Low_complexity 1 29 0 995 115 30 12 chr21 6577246 6577411 -28330159 + L1PA11 LINE L1 6007 6174 0 21 0 0 0 chr21 6577483 6577504 -28330066 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr21 6577975 6578015 -28329555 + AT_rich Low_complexity Low_complexity 1 40 0 1737 160 7 3 chr21 6578397 6578684 -28328886 + AluJb SINE Alu 1 288 -24 329 58 19 0 chr21 6578687 6578739 -28328831 + (CAA)n Simple_repeat Simple_repeat 2 54 0 527 29 0 0 chr21 6579170 6579240 -28328330 + L1PA2 LINE L1 6086 6155 0 2048 114 3 10 chr21 6579250 6579547 -28328023 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr21 6579864 6579908 -28327662 + AT_rich Low_complexity Low_complexity 1 44 0 1786 141 21 93 chr21 6580122 6580497 -28327073 - MER7A DNA MER2_type 0 346 1 239 366 24 0 chr21 6580915 6581038 -28326532 - MIR SINE MIR -61 201 76 1853 103 0 0 chr21 6582239 6582491 -28325079 + AluSx SINE Alu 54 305 -7 456 81 0 0 chr21 6582983 6583045 -28324525 + L1P5 LINE L1 5729 5790 -361 410 244 0 0 chr21 6583047 6583137 -28324433 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr21 6583155 6583178 -28324392 + (CA)n Simple_repeat Simple_repeat 2 24 0 2440 124 0 3 chr21 6583178 6583548 -28324022 + L1PB1 LINE L1 5782 6150 -1 1898 135 68 42 chr21 6586133 6586488 -28321082 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr21 6587660 6587683 -28319887 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr21 6588045 6588109 -28319461 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr21 6588588 6588617 -28318953 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr21 6589452 6589476 -28318094 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 5359 82 23 4 chr21 6589481 6590213 -28317357 - L1PA8A LINE L1 -13 6118 5373 2167 95 0 3 chr21 6590310 6590638 -28316932 + AluSq SINE Alu 3 329 0 855 204 50 6 chr21 6590788 6590969 -28316601 - MER5A DNA MER1_type 0 189 1 378 284 39 0 chr21 6592126 6592228 -28315342 - MIR SINE MIR -156 106 1 2316 77 0 22 chr21 6594619 6594932 -28312638 - AluSx SINE Alu -6 306 1 2161 96 0 10 chr21 6596304 6596606 -28310964 + AluY SINE Alu 1 299 -12 207 0 0 0 chr21 6596791 6596814 -28310756 + (T)n Simple_repeat Simple_repeat 1 23 0 2520 50 0 28 chr21 6597180 6597500 -28310070 - AluY SINE Alu 0 311 1 29 0 0 0 chr21 6597549 6597578 -28309992 + AT_rich Low_complexity Low_complexity 1 29 0 2141 97 16 23 chr21 6598161 6598470 -28309100 + AluSc SINE Alu 1 307 -2 368 277 6 43 chr21 6599336 6599490 -28308080 - MER5B DNA MER1_type -2 176 46 2539 48 0 3 chr21 6599682 6599992 -28307578 + AluY SINE Alu 1 309 -2 21 0 0 0 chr21 6601323 6601344 -28306226 + AT_rich Low_complexity Low_complexity 1 21 0 243 347 21 21 chr21 6602222 6602317 -28305253 + MER5A DNA MER1_type 45 139 -50 1979 106 4 0 chr21 6602620 6602893 -28304677 + AluSq SINE Alu 36 309 -4 21 0 0 0 chr21 6603802 6603823 -28303747 + AT_rich Low_complexity Low_complexity 1 21 0 1145 292 82 40 chr21 6603963 6604592 -28302978 + L2 LINE L2 1990 2693 -621 304 371 17 9 chr21 6605002 6605118 -28302452 + L2 LINE L2 3156 3272 0 2992 179 14 0 chr21 6605793 6606350 -28301220 + L1PB4 LINE L1 5586 6150 -6 2118 88 26 26 chr21 6606395 6606702 -28300868 - AluSx SINE Alu -5 307 1 21 57 0 0 chr21 6606832 6606867 -28300703 + AT_rich Low_complexity Low_complexity 1 35 0 2299 88 3 0 chr21 6607097 6607393 -28300177 + AluSp SINE Alu 1 297 -16 374 304 32 6 chr21 6607680 6607838 -28299732 + L1ME1 LINE L1 5982 6143 -23 780 305 67 46 chr21 6607846 6608368 -28299202 + L1MC4a LINE L1 6344 6876 -932 651 263 59 16 chr21 6608596 6608851 -28298719 + L1MC4 LINE L1 7777 8042 0 317 325 33 33 chr21 6609018 6609169 -28298401 - MIR SINE MIR -98 164 14 2986 168 43 6 chr21 6609768 6610305 -28297265 + MER41D LTR ERV1 1 557 0 602 273 96 15 chr21 6612696 6612894 -28294676 + MIR SINE MIR 49 262 0 2462 56 0 3 chr21 6613737 6614042 -28293528 + AluY SINE Alu 1 304 -7 196 109 22 22 chr21 6614191 6614237 -28293333 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 24 77 0 0 chr21 6614463 6614515 -28293055 + AT_rich Low_complexity Low_complexity 1 52 0 506 263 0 72 chr21 6617596 6617790 -28289780 + MER5A DNA MER1_type 7 186 -3 728 116 20 20 chr21 6618053 6618199 -28289371 + CT-rich Low_complexity Low_complexity 3 148 0 1965 130 30 10 chr21 6618210 6618511 -28289059 - AluSx SINE Alu -5 307 1 24 32 0 0 chr21 6618572 6618603 -28288967 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr21 6620775 6620799 -28286771 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 321 333 18 0 chr21 6621167 6621281 -28286289 + GA-rich Low_complexity Low_complexity 1 116 0 868 244 84 45 chr21 6622325 6622636 -28284934 + Charlie4a DNA MER1_type 4 326 -182 27 49 0 0 chr21 6622644 6622685 -28284885 + AT_rich Low_complexity Low_complexity 1 41 0 584 203 14 132 chr21 6622921 6623050 -28284520 - MER5A DNA MER1_type -2 187 91 2637 23 0 0 chr21 6623050 6623354 -28284216 - AluY SINE Alu -7 304 1 584 203 14 132 chr21 6623354 6623436 -28284134 - MER5A DNA MER1_type -98 91 1 27 29 0 0 chr21 6623907 6623941 -28283629 + AT_rich Low_complexity Low_complexity 1 34 0 261 0 0 0 chr21 6626243 6626272 -28281298 + (CA)n Simple_repeat Simple_repeat 2 30 0 4702 45 12 2 chr21 6626465 6627049 -28280521 - L1PA7 LINE L1 -1 6153 5564 3442 60 0 52 chr21 6627050 6627719 -28279851 + L1PA7 LINE L1 4918 5565 -589 6871 161 12 24 chr21 6627903 6629707 -28277863 + L1MA7 LINE L1 3964 5745 -555 21 57 0 0 chr21 6630322 6630357 -28277213 + AT_rich Low_complexity Low_complexity 1 35 0 1327 176 57 7 chr21 6630924 6631203 -28276367 + L1MA7 LINE L1 5926 6218 -73 226 141 16 16 chr21 6631292 6631356 -28276214 + L1MA7 LINE L1 6216 6279 -12 336 307 61 25 chr21 6632013 6632148 -28275422 + MIR SINE MIR 17 160 -102 2259 95 3 0 chr21 6632148 6632444 -28275126 - AluSq SINE Alu -16 297 1 336 307 61 25 chr21 6632444 6632471 -28275099 + MIR SINE MIR 160 185 -77 807 38 19 0 chr21 6633257 6633362 -28274208 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 6633362 6633384 -28274186 + AT_rich Low_complexity Low_complexity 1 22 0 873 47 0 0 chr21 6633431 6633538 -28274032 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 6633538 6633560 -28274010 + AT_rich Low_complexity Low_complexity 1 22 0 898 37 0 0 chr21 6633607 6633714 -28273856 + L1PA5 LINE L1 6039 6145 -9 853 65 0 0 chr21 6633785 6633892 -28273678 + L1PA5 LINE L1 6039 6145 -9 26 0 0 0 chr21 6633892 6633918 -28273652 + AT_rich Low_complexity Low_complexity 1 26 0 192 40 0 0 chr21 6635559 6635584 -28271986 + (TG)n Simple_repeat Simple_repeat 2 26 0 1362 57 0 0 chr21 6635622 6635798 -28271772 + (CATCC)n Simple_repeat Simple_repeat 3 178 0 30 0 0 0 chr21 6636273 6636303 -28271267 + AT_rich Low_complexity Low_complexity 1 30 0 286 313 78 36 chr21 6637005 6637171 -28270399 + MIR SINE MIR 11 183 -79 2396 65 3 3 chr21 6637289 6637595 -28269975 - AluSp SINE Alu -7 306 1 27 29 0 0 chr21 6638101 6638135 -28269435 + AT_rich Low_complexity Low_complexity 1 34 0 2358 68 7 0 chr21 6639207 6639516 -28268054 - AluY SINE Alu 0 311 1 4332 161 11 21 chr21 6640067 6640889 -28266681 + L1MA4 LINE L1 5480 6293 -7 2269 130 28 8 chr21 6641091 6641444 -28266126 - THE1B LTR MaLR -4 360 1 28 0 0 0 chr21 6642463 6642491 -28265079 + AT_rich Low_complexity Low_complexity 1 28 0 252 212 0 0 chr21 6643660 6643726 -28263844 + (TA)n Simple_repeat Simple_repeat 2 67 0 1467 103 0 5 chr21 6645718 6645921 -28261649 + AluSg/x SINE Alu 81 282 -28 25 51 0 0 chr21 6646105 6646144 -28261426 + AT_rich Low_complexity Low_complexity 1 39 0 2183 124 22 3 chr21 6646437 6646793 -28260777 + L1MA3 LINE L1 5943 6305 0 24 0 0 0 chr21 6647580 6647604 -28259966 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr21 6647768 6647798 -28259772 + AT_rich Low_complexity Low_complexity 1 30 0 363 337 130 33 chr21 6647841 6648325 -28259245 + L2 LINE L2 2299 2829 -485 21 0 0 0 chr21 6648553 6648574 -28258996 + AT_rich Low_complexity Low_complexity 1 21 0 2466 47 0 3 chr21 6648657 6648958 -28258612 + AluY SINE Alu 1 300 -11 339 330 17 0 chr21 6649682 6649797 -28257773 + MIR SINE MIR 146 262 0 1003 84 51 6 chr21 6650225 6650409 -28257161 - L1P LINE L1 -743 5403 5226 4795 111 8 1 chr21 6650409 6651126 -28256444 + L1PA13 LINE L1 5440 6162 -1 23 33 0 0 chr21 6651405 6651435 -28256135 + AT_rich Low_complexity Low_complexity 1 30 0 238 352 23 47 chr21 6652465 6652593 -28254977 - MIR SINE MIR -79 183 59 21 0 0 0 chr21 6654404 6654425 -28253145 + AT_rich Low_complexity Low_complexity 1 21 0 796 228 12 0 chr21 6654530 6654701 -28252869 - FAM SINE Alu -2 173 1 729 154 0 0 chr21 6654943 6655060 -28252510 - AluSq/x SINE Alu -196 117 1 348 103 0 0 chr21 6656561 6656619 -28250951 + (GA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr21 6656945 6656968 -28250602 + AT_rich Low_complexity Low_complexity 1 23 0 2207 162 39 34 chr21 6657911 6658455 -28249115 + MLT2A2 LTR ERVL 1 553 -1 22 0 0 0 chr21 6658530 6658552 -28249018 + AT_rich Low_complexity Low_complexity 1 22 0 1612 194 0 29 chr21 6658921 6659236 -28248334 - AluJo SINE Alu -5 307 2 235 323 0 0 chr21 6660099 6660161 -28247409 - L2 LINE L2 -15 3257 3196 192 152 0 0 chr21 6660177 6660210 -28247360 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 185 362 38 12 chr21 6660252 6660332 -28247238 - MIR SINE MIR -62 146 65 186 189 0 0 chr21 6660575 6660612 -28246958 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr21 6663077 6663098 -28244472 + AT_rich Low_complexity Low_complexity 1 21 0 2522 50 0 0 chr21 6663326 6663629 -28243941 + AluY SINE Alu 1 303 -8 21 36 0 0 chr21 6664235 6664263 -28243307 + AT_rich Low_complexity Low_complexity 1 28 0 248 330 104 0 chr21 6664272 6664378 -28243192 - L3 LINE CR1 -241 1336 1220 1742 157 28 3 chr21 6665110 6665396 -28242174 - AluSx SINE Alu -19 293 1 381 235 0 3 chr21 6665693 6665783 -28241787 + AluJ/FLAM SINE Alu 1 68 -234 414 60 0 60 chr21 6665788 6665855 -28241715 + HERVK14 LTR ERVK 5880 5942 -3 1168 169 15 10 chr21 6665860 6666061 -28241509 + AluJo SINE Alu 93 294 -18 540 309 51 39 chr21 6666703 6666959 -28240611 - MIR SINE MIR -1 261 3 596 305 64 58 chr21 6668239 6668774 -28238796 + L2 LINE L2 2510 3312 -1 1821 169 30 21 chr21 6669231 6669603 -28237967 + THE1C LTR MaLR 1 375 0 183 222 95 32 chr21 6669799 6669862 -28237708 + L2 LINE L2 3200 3266 -6 461 327 0 28 chr21 6670235 6670452 -28237118 + L1 LINE L1 4186 4396 -1750 305 290 0 0 chr21 6671756 6671849 -28235721 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 525 251 42 54 chr21 6672407 6672646 -28234924 + MER106A DNA MER1_type 1 236 0 197 311 44 44 chr21 6673444 6673534 -28234036 + MIR SINE MIR 3 92 -170 21 36 0 0 chr21 6674219 6674247 -28233323 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr21 6675789 6675839 -28231731 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr21 6676798 6676828 -28230742 + AT_rich Low_complexity Low_complexity 1 30 0 2809 184 77 2 chr21 6677809 6678384 -28229186 - L1MB1 LINE L1 -1 6167 5550 1599 205 40 5 chr21 6678385 6678780 -28228790 - L1MB1 LINE L1 -1220 4926 4518 25 31 0 0 chr21 6680502 6680534 -28227036 + AT_rich Low_complexity Low_complexity 1 32 0 217 215 169 0 chr21 6680569 6680634 -28226936 - MIR SINE MIR -4 258 183 21 57 0 0 chr21 6681348 6681383 -28226187 + AT_rich Low_complexity Low_complexity 1 35 0 784 171 22 15 chr21 6683316 6683573 -28223997 + CT-rich Low_complexity Low_complexity 1 258 0 2098 100 30 0 chr21 6683597 6683896 -28223674 - AluSq SINE Alu 0 313 6 26 50 0 0 chr21 6684793 6684833 -28222737 + AT_rich Low_complexity Low_complexity 1 40 0 504 273 201 10 chr21 6685550 6685744 -28221826 - MIR SINE MIR -1 261 31 464 299 32 6 chr21 6686158 6686315 -28221255 + MLT1J2 LTR MaLR 6 166 -284 1036 193 173 24 chr21 6688929 6689224 -28218346 - MER44D DNA MER2_type 0 609 1 49 66 0 0 chr21 6689824 6689915 -28217655 + AT_rich Low_complexity Low_complexity 1 91 0 369 0 0 0 chr21 6689965 6690006 -28217564 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 6691306 6691341 -28216229 + AT_rich Low_complexity Low_complexity 1 35 0 206 403 40 0 chr21 6691718 6691842 -28215728 - L2 LINE L2 0 3313 3185 2872 3 0 0 chr21 6692058 6692371 -28215199 + AluYb8 SINE Alu 1 313 -5 22 0 0 0 chr21 6694067 6694089 -28213481 + AT_rich Low_complexity Low_complexity 1 22 0 189 204 23 0 chr21 6696672 6696716 -28210854 + L2 LINE L2 3269 3313 0 26 0 0 0 chr21 6697118 6697144 -28210426 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr21 6697188 6697217 -28210353 + AT_rich Low_complexity Low_complexity 1 29 0 340 312 106 26 chr21 6697541 6697730 -28209840 + MIR SINE MIR 3 206 -56 351 0 0 0 chr21 6698034 6698073 -28209497 + (CA)n Simple_repeat Simple_repeat 1 39 0 1095 110 64 0 chr21 6699680 6699853 -28207717 + L1PA13 LINE L1 5980 6163 0 307 350 77 16 chr21 6699947 6700141 -28207429 + MIR SINE MIR 7 212 -50 278 232 11 63 chr21 6700456 6700551 -28207019 + MER46C DNA MER2_type 79 168 -170 300 250 62 0 chr21 6700536 6700632 -28206938 + Tigger4(Zombi) DNA MER2_type 2630 2731 0 34 42 0 0 chr21 6700811 6700859 -28206711 + AT_rich Low_complexity Low_complexity 1 48 0 33 66 0 0 chr21 6702945 6703006 -28204564 + AT_rich Low_complexity Low_complexity 1 61 0 424 253 104 63 chr21 6703442 6703618 -28203952 + MLT1L LTR MaLR 355 543 -72 2167 96 0 3 chr21 6703618 6703909 -28203661 - AluSc SINE Alu -19 290 1 424 253 104 63 chr21 6703909 6703953 -28203617 + MLT1L LTR MaLR 543 584 -31 424 300 15 15 chr21 6704059 6704189 -28203381 - MIR SINE MIR -114 148 19 201 175 0 0 chr21 6704432 6704472 -28203098 + CT-rich Low_complexity Low_complexity 3 42 0 534 31 0 0 chr21 6705463 6705527 -28202043 + (CA)n Simple_repeat Simple_repeat 2 65 0 204 171 0 49 chr21 6705527 6705568 -28202002 - MIR SINE MIR -167 95 57 28 29 0 0 chr21 6705779 6705814 -28201756 + AT_rich Low_complexity Low_complexity 1 35 0 671 153 18 18 chr21 6706925 6707152 -28200418 + GA-rich Low_complexity Low_complexity 1 227 0 1929 156 46 22 chr21 6708646 6709012 -28198558 - THE1C LTR MaLR 0 375 1 9214 131 50 12 chr21 6709012 6710531 -28197039 - THE1C-int LTR MaLR 0 1580 4 1972 132 62 14 chr21 6710531 6710883 -28196687 - THE1C LTR MaLR -3 372 1 216 360 33 20 chr21 6711065 6711215 -28196355 + L3 LINE CR1 1248 1399 -178 417 54 0 0 chr21 6712382 6712438 -28195132 + (TC)n Simple_repeat Simple_repeat 1 56 0 346 294 74 23 chr21 6714178 6714354 -28193216 + MIR SINE MIR 22 201 -61 2427 74 0 0 chr21 6714359 6714658 -28192912 + AluY SINE Alu 1 299 -12 456 67 0 0 chr21 6714658 6714718 -28192852 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 201 283 50 0 chr21 6715311 6715371 -28192199 - L2 LINE L2 -20 3293 3231 1178 238 44 0 chr21 6717362 6717660 -28189910 + L1MD3 LINE L1 7674 7984 -11 5926 179 5 3 chr21 6717690 6719619 -28187951 + L1PA16 LINE L1 4234 6166 0 2263 85 3 0 chr21 6720125 6720419 -28187151 + AluSc SINE Alu 10 304 -5 489 296 63 19 chr21 6720553 6720712 -28186858 + MIR SINE MIR 13 178 -84 348 324 61 37 chr21 6723343 6723834 -28183736 + L1MC/D LINE L1 4713 5215 -931 664 305 40 34 chr21 6723900 6724225 -28183345 - LTR16C LTR ERVL -32 459 133 232 321 96 55 chr21 6724543 6724814 -28182756 + L1MC/D LINE L1 5525 5806 -2002 1069 194 8 57 chr21 6725303 6725550 -28182020 - AluJo SINE Alu 0 312 78 659 259 73 68 chr21 6726875 6727215 -28180355 - HAL1b LINE L1 -747 601 260 677 174 0 7 chr21 6727676 6727814 -28179756 + CT-rich Low_complexity Low_complexity 1 137 0 216 0 0 0 chr21 6730590 6730614 -28176956 + (CTG)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr21 6730808 6730841 -28176729 + AT_rich Low_complexity Low_complexity 1 33 0 798 130 18 27 chr21 6731052 6731275 -28176295 + CT-rich Low_complexity Low_complexity 1 221 0 2023 98 0 44 chr21 6731294 6731590 -28175980 - AluSg1 SINE Alu -22 287 5 1207 161 0 0 chr21 6731597 6731789 -28175781 - AluJo SINE Alu -15 297 106 24 0 0 0 chr21 6731798 6731822 -28175748 + AT_rich Low_complexity Low_complexity 1 24 0 5027 193 26 22 chr21 6732046 6733623 -28173947 - L1MA10 LINE L1 -3 6331 4748 2796 190 28 14 chr21 6733626 6734263 -28173307 + L1MA10 LINE L1 4102 4747 -1399 190 227 0 45 chr21 6735694 6735782 -28171788 + (CATA)n Simple_repeat Simple_repeat 3 86 0 24 0 0 0 chr21 6736586 6736610 -28170960 + AT_rich Low_complexity Low_complexity 1 24 0 2028 182 56 25 chr21 6736795 6737080 -28170490 + MER65C LTR ERV1 3 308 -153 2444 77 0 0 chr21 6737080 6737391 -28170179 - AluY SINE Alu 0 311 1 2028 182 56 25 chr21 6737391 6737550 -28170020 + MER65C LTR ERV1 308 461 0 1959 139 0 7 chr21 6739851 6740152 -28167418 - AluSx SINE Alu -13 299 1 603 292 21 79 chr21 6740363 6740603 -28166967 - MIR SINE MIR -1 261 36 427 330 76 18 chr21 6740619 6740843 -28166727 + MLT2F LTR ERVL 6 242 -421 2457 32 3 29 chr21 6741273 6741582 -28165988 - AluY SINE Alu -10 301 1 428 242 27 7 chr21 6742746 6742895 -28164675 + (TA)n Simple_repeat Simple_repeat 2 153 0 182 182 0 45 chr21 6743789 6743833 -28163737 - L2 LINE L2 -15 3257 3216 567 294 33 28 chr21 6744053 6744233 -28163337 - MIR SINE MIR -52 210 30 8085 99 31 5 chr21 6746111 6747267 -28160303 + THE1A-int LTR MaLR 395 1580 0 2176 135 17 9 chr21 6747267 6747615 -28159955 + THE1A LTR MaLR 1 351 -4 23 54 0 0 chr21 6749416 6749453 -28158117 + AT_rich Low_complexity Low_complexity 1 37 0 1610 209 53 31 chr21 6750233 6750687 -28156883 + MLT1C LTR MaLR 1 464 -3 1532 164 110 7 chr21 6751277 6751558 -28156012 + AluJb SINE Alu 1 310 -2 294 301 20 7 chr21 6752100 6752253 -28155317 + (TA)n Simple_repeat Simple_repeat 2 156 0 11370 30 4 1 chr21 6752970 6754357 -28153213 - L1PA3 LINE L1 -1967 4179 2787 10004 22 0 0 chr21 6754357 6756354 -28151216 + L1PA3 LINE L1 4191 6153 -2 11370 30 4 1 chr21 6756354 6756379 -28151191 - L1P LINE L1 -3359 2787 2764 21 36 0 0 chr21 6757087 6757115 -28150455 + AT_rich Low_complexity Low_complexity 1 28 0 188 289 0 0 chr21 6757163 6757208 -28150362 - MIR SINE MIR -129 133 89 2595 30 3 0 chr21 6757959 6758261 -28149309 + AluY SINE Alu 1 303 -8 2046 100 44 0 chr21 6758878 6759189 -28148381 + AluSq SINE Alu 2 324 0 2275 103 0 7 chr21 6759193 6759503 -28148067 + AluSg SINE Alu 3 310 0 1976 130 0 0 chr21 6759528 6759857 -28147713 - AluSx SINE Alu 0 329 1 22 35 0 0 chr21 6760052 6760081 -28147489 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 6760346 6760372 -28147198 + AT_rich Low_complexity Low_complexity 1 26 0 320 333 47 30 chr21 6761060 6761399 -28146171 + L1PA12 LINE L1 11 355 -7226 3174 104 0 2 chr21 6762061 6762513 -28145057 + L1PA7 LINE L1 5704 6154 0 2247 161 25 23 chr21 6762513 6762814 -28144756 - L1MA6 LINE L1 -90 6210 5906 359 110 11 132 chr21 6762814 6762905 -28144665 + MADE1 DNA Mariner 1 80 0 2247 161 25 23 chr21 6762905 6763039 -28144531 - L1MA6 LINE L1 -394 5906 5774 415 142 35 55 chr21 6763059 6763073 -28144497 - L1P5 LINE L1 -362 5794 5781 1731 150 88 0 chr21 6763073 6763347 -28144223 - AluSx SINE Alu -14 298 1 415 142 35 55 chr21 6763347 6763432 -28144138 - L1P5 LINE L1 -375 5781 5702 7755 171 24 24 chr21 6763428 6765031 -28142539 + L1M2 LINE L1 3740 5340 -960 2088 125 14 0 chr21 6765031 6765326 -28142244 + AluSg SINE Alu 1 299 -11 7755 171 24 24 chr21 6765326 6765375 -28142195 + L1M2 LINE L1 5340 5387 -913 1840 164 40 30 chr21 6765375 6765746 -28141824 + THE1C LTR MaLR 1 375 0 7755 171 24 24 chr21 6765746 6766044 -28141526 + L1M2 LINE L1 5387 5708 -592 417 382 24 20 chr21 6766180 6766434 -28141136 + MIR SINE MIR 5 259 -3 357 24 0 0 chr21 6767726 6767768 -28139802 + (CA)n Simple_repeat Simple_repeat 2 43 0 239 191 12 60 chr21 6769740 6769824 -28137746 + (CATG)n Simple_repeat Simple_repeat 4 83 0 1364 170 4 30 chr21 6770249 6770514 -28137056 + AluJb SINE Alu 1 258 -54 1573 175 12 6 chr21 6770634 6770954 -28136616 - L1MA10 LINE L1 -1 6333 6012 395 61 0 0 chr21 6771211 6771260 -28136310 - MLT2D LTR ERVL 0 414 366 458 237 130 38 chr21 6771296 6771427 -28136143 - MLT2D LTR ERVL -41 373 231 2290 170 20 0 chr21 6771454 6771860 -28135710 + L1MB1 LINE L1 5579 5992 -197 2389 208 47 36 chr21 6772240 6772788 -28134782 - MLT2B3 LTR ERVL 0 554 1 2535 102 39 6 chr21 6772793 6773156 -28134414 + THE1C LTR MaLR 1 375 0 508 283 78 29 chr21 6774851 6775095 -28132475 + MIR SINE MIR 6 261 -1 630 267 101 68 chr21 6776768 6777136 -28130434 - L1M4 LINE L1 -985 5161 4807 2113 112 0 0 chr21 6777136 6777421 -28130149 - AluSx SINE Alu -7 305 21 630 267 101 68 chr21 6777421 6777941 -28129629 - L1M4 LINE L1 -1339 4807 4243 415 301 68 6 chr21 6777988 6778164 -28129406 - L1M4 LINE L1 -1961 4185 3999 1638 192 62 30 chr21 6778353 6778754 -28128816 - MLT2D LTR ERVL 0 414 1 2793 164 33 4 chr21 6778838 6779321 -28128249 + LOR1a LTR ERV1 1 497 0 22 0 0 0 chr21 6780156 6780178 -28127392 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr21 6780418 6780438 -28127132 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1960 67 4 11 chr21 6780622 6780889 -28126681 + L1PA7 LINE L1 1687 1951 -4195 22421 84 5 10 chr21 6780931 6781760 -28125810 + L1PA7 LINE L1 2132 2964 -3197 2373 79 3 0 chr21 6781760 6782065 -28125505 + AluY SINE Alu 1 306 -5 22421 84 5 10 chr21 6782065 6785293 -28122277 + L1PA7 LINE L1 2964 6161 0 21 0 0 0 chr21 6787317 6787338 -28120232 + AT_rich Low_complexity Low_complexity 1 21 0 273 196 0 0 chr21 6790323 6790379 -28117191 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 272 16 8 chr21 6791967 6792092 -28115478 + (TA)n Simple_repeat Simple_repeat 1 126 0 2174 119 3 0 chr21 6792163 6792457 -28115113 - AluSq SINE Alu -18 295 1 1642 148 0 8 chr21 6793208 6793465 -28114105 + AluJb SINE Alu 34 288 -24 529 267 48 36 chr21 6794969 6795134 -28112436 + MER5A DNA MER1_type 23 189 0 277 152 0 102 chr21 6795355 6795414 -28112156 - MLT1K LTR MaLR -16 572 520 1159 228 55 7 chr21 6796239 6796546 -28111024 - L1MD3 LINE L1 -2 7993 7672 822 239 27 40 chr21 6796558 6796780 -28110790 - L1MD3 LINE L1 -382 7613 7395 995 179 87 5 chr21 6796799 6797017 -28110553 - MER46A DNA MER2_type 0 236 1 218 180 0 40 chr21 6797116 6797166 -28110404 + (CATA)n Simple_repeat Simple_repeat 2 49 0 5146 54 3 1 chr21 6797401 6798054 -28109516 + L1PA7 LINE L1 5287 5940 -214 195 409 15 8 chr21 6798176 6798308 -28109262 - L3 LINE CR1 -416 1161 1029 24 0 0 0 chr21 6800036 6800060 -28107510 + AT_rich Low_complexity Low_complexity 1 24 0 1177 148 19 0 chr21 6800230 6800446 -28107124 + L1MA4A LINE L1 6077 6296 -7 26 0 0 0 chr21 6800458 6800484 -28107086 + AT_rich Low_complexity Low_complexity 1 26 0 212 175 63 0 chr21 6800681 6800744 -28106826 + (CTTAT)n Simple_repeat Simple_repeat 3 69 0 981 247 49 47 chr21 6801600 6802009 -28105561 - L1ME3A LINE L1 -1 6169 5760 204 40 0 0 chr21 6802400 6802425 -28105145 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 700 310 66 36 chr21 6802480 6802812 -28104758 - L1ME3A LINE L1 -1181 4965 4624 618 287 50 19 chr21 6803104 6803362 -28104208 - L1ME3A LINE L1 -1910 4236 3971 2342 124 22 0 chr21 6803582 6803938 -28103632 - THE1B LTR MaLR 0 364 1 325 272 103 22 chr21 6804264 6804427 -28103143 - MIR SINE MIR -59 203 24 201 167 0 0 chr21 6804614 6804650 -28102920 + A-rich Low_complexity Low_complexity 6 41 0 185 316 74 63 chr21 6804879 6805069 -28102501 + L2 LINE L2 530 721 -2593 524 341 35 48 chr21 6805828 6806375 -28101195 - L2 LINE L2 -2 3311 2776 2263 301 129 21 chr21 6806352 6807303 -28100267 - L2 LINE L2 -1163 2151 1098 2248 135 26 0 chr21 6807303 6807650 -28099920 - THE1B LTR MaLR -8 356 1 1818 158 21 24 chr21 6807787 6808123 -28099447 - MER1B DNA MER1_type -1 336 2 495 219 8 55 chr21 6809148 6809276 -28098294 - L2 LINE L2 0 3313 3192 23 78 0 0 chr21 6809703 6809754 -28097816 + AT_rich Low_complexity Low_complexity 1 51 0 886 279 56 31 chr21 6809800 6810155 -28097415 - MER104 DNA MER2_type -1527 368 5 27 29 0 0 chr21 6811002 6811036 -28096534 + AT_rich Low_complexity Low_complexity 1 34 0 1066 35 0 21 chr21 6811823 6811965 -28095605 + L1PA5 LINE L1 6016 6154 0 2424 53 13 0 chr21 6812121 6812421 -28095149 + AluY SINE Alu 1 304 -7 647 146 0 0 chr21 6812524 6812620 -28094950 + FLAM_C SINE Alu 26 121 -22 180 338 29 0 chr21 6812638 6812706 -28094864 - MIR SINE MIR -109 153 84 22 0 0 0 chr21 6813874 6813896 -28093674 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr21 6815251 6815285 -28092285 + (GA)n Simple_repeat Simple_repeat 1 34 0 445 286 142 31 chr21 6815355 6815783 -28091787 + MLT1D LTR MaLR 2 390 0 1125 200 47 59 chr21 6815958 6816397 -28091173 - MLT1B LTR MaLR -7 383 1 30 27 0 0 chr21 6817486 6817523 -28090047 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr21 6817954 6817990 -28089580 + AT_rich Low_complexity Low_complexity 1 36 0 10628 90 8 1 chr21 6820274 6822561 -28085009 + L1PA7 LINE L1 3857 6143 -11 419 35 18 0 chr21 6822562 6822619 -28084951 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chr21 6823010 6823038 -28084532 + AT_rich Low_complexity Low_complexity 1 28 0 5661 163 22 23 chr21 6823237 6825216 -28082354 - L1MA6 LINE L1 -9 6291 4316 316 92 71 20 chr21 6825664 6825762 -28081808 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 266 318 47 37 chr21 6826450 6826712 -28080858 + L3 LINE CR1 744 1050 -527 275 324 0 99 chr21 6826982 6827124 -28080446 - L2 LINE L2 -8 3305 3178 1743 141 76 25 chr21 6827260 6827615 -28079955 + THE1C LTR MaLR 1 373 -2 4822 221 32 6 chr21 6827622 6828662 -28078908 + THE1C-int LTR MaLR 5 1071 -580 1597 130 24 0 chr21 6828768 6829022 -28078548 + THE1C-int LTR MaLR 1004 1263 -317 28 48 0 0 chr21 6829363 6829405 -28078165 + AT_rich Low_complexity Low_complexity 1 42 0 1991 130 0 3 chr21 6830432 6830765 -28076805 + AluSx SINE Alu 1 332 0 252 0 0 0 chr21 6831722 6831750 -28075820 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1406 78 12 121 chr21 6833051 6833308 -28074262 - MER30 DNA MER1_type 0 230 2 1535 207 3 19 chr21 6836699 6837008 -28070562 + AluJo SINE Alu 6 309 -3 207 0 0 0 chr21 6837034 6837057 -28070513 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr21 6841554 6841589 -28065981 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr21 6843985 6844011 -28063559 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 228 111 0 0 chr21 6844031 6844067 -28063503 + (TC)n Simple_repeat Simple_repeat 2 37 0 739 237 19 0 chr21 6844200 6844415 -28063155 - L1MC3 LINE L1 -8 7777 7559 2889 211 55 2 chr21 6844427 6845076 -28062494 - L1MC3 LINE L1 -265 7520 6852 543 233 105 23 chr21 6845105 6845277 -28062293 + MER5A DNA MER1_type 4 189 0 1785 98 28 47 chr21 6845325 6845370 -28062200 - L1MA5 LINE L1 -10 6290 6246 2145 111 7 0 chr21 6845370 6845667 -28061903 - AluSx SINE Alu -13 299 1 1785 98 28 47 chr21 6845667 6845938 -28061632 - L1MA5 LINE L1 -54 6246 5980 336 102 0 0 chr21 6846411 6846460 -28061110 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr21 6846713 6846734 -28060836 + AT_rich Low_complexity Low_complexity 1 21 0 195 139 0 0 chr21 6848185 6848221 -28059349 + (CA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr21 6848252 6848296 -28059274 + AT_rich Low_complexity Low_complexity 1 44 0 524 121 11 22 chr21 6848923 6849014 -28058556 + L1MA4 LINE L1 5569 5658 -642 2283 98 0 3 chr21 6849052 6849347 -28058223 + AluSq SINE Alu 4 297 -16 2904 188 6 43 chr21 6849356 6850006 -28057564 + L1MA4 LINE L1 5675 6300 0 438 323 49 18 chr21 6850355 6850433 -28057137 + MIR SINE MIR 3 77 -185 3418 184 50 13 chr21 6850433 6851129 -28056441 + MER72 LTR ERV1 1 722 0 438 323 49 18 chr21 6851129 6851276 -28056294 + MIR SINE MIR 77 235 -27 25 0 0 0 chr21 6852262 6852287 -28055283 + AT_rich Low_complexity Low_complexity 1 25 0 1640 196 10 16 chr21 6852358 6852669 -28054901 - AluJb SINE Alu -1 311 3 23 54 0 0 chr21 6852937 6852974 -28054596 + AT_rich Low_complexity Low_complexity 1 37 0 236 292 154 46 chr21 6853855 6853985 -28053585 + L2 LINE L2 2564 2707 -607 214 386 28 34 chr21 6854118 6854294 -28053276 + L2 LINE L2 2918 3092 -221 23 33 0 0 chr21 6854343 6854373 -28053197 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 0 chr21 6854855 6854892 -28052678 + AT_rich Low_complexity Low_complexity 1 37 0 563 64 0 0 chr21 6855487 6855565 -28052005 - AluJ/FRAM SINE Alu -11 301 224 315 273 45 105 chr21 6855667 6855942 -28051628 + MLT1J1 LTR MaLR 9 271 -175 842 199 0 13 chr21 6857502 6857658 -28049912 + FRAM SINE Alu 1 153 -23 576 307 73 23 chr21 6858109 6858451 -28049119 - L1ME3A LINE L1 -8 6162 5804 386 264 38 9 chr21 6858456 6858562 -28049008 - L1ME3A LINE L1 -406 5756 5648 423 366 55 18 chr21 6858720 6858993 -28048577 - L1MEc LINE L1 -4647 1960 1678 397 334 62 23 chr21 6859056 6859364 -28048206 - L1MEc LINE L1 -4929 1497 1178 2050 148 83 42 chr21 6861169 6861603 -28045967 + LTR47A LTR ERVL 1 452 0 219 273 182 0 chr21 6861777 6861854 -28045716 + L2 LINE L2 2152 2242 -1072 2793 177 9 45 chr21 6862213 6862789 -28044781 - MER41D LTR ERV1 0 557 3 193 352 82 21 chr21 6863013 6863246 -28044324 - L2 LINE L2 -1124 2190 1944 258 241 0 23 chr21 6866495 6866582 -28040988 + (TTAAA)n Simple_repeat Simple_repeat 1 85 0 210 37 0 0 chr21 6867796 6867823 -28039747 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2271 46 42 3 chr21 6868707 6868991 -28038579 + AluY SINE Alu 11 305 -6 1026 262 57 75 chr21 6870230 6870760 -28036810 - MLT2B1 LTR ERVL 0 520 1 1603 212 39 11 chr21 6871606 6871955 -28035615 - MLT1A1 LTR MaLR 0 365 5 2499 261 33 33 chr21 6872063 6872880 -28034690 - L1ME1 LINE L1 -41 6125 5309 2367 227 84 57 chr21 6872877 6873797 -28033773 + L1M4 LINE L1 3923 4867 -1279 5903 126 16 3 chr21 6873801 6874739 -28032831 - L1PA8A LINE L1 -1095 5051 4102 6275 89 9 3 chr21 6874740 6875775 -28031795 + L1PA8A LINE L1 5059 6104 -27 355 291 25 77 chr21 6877007 6877203 -28030367 - MLT1J LTR MaLR -205 306 121 1697 186 0 14 chr21 6878275 6878565 -28029005 + AluJb SINE Alu 1 286 -26 26 30 0 0 chr21 6878854 6878887 -28028683 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 6878924 6878983 -28028587 + MIR SINE MIR 64 123 -139 365 141 64 0 chr21 6879108 6879186 -28028384 - LTR50 LTR ERVL -2 793 711 2244 105 8 45 chr21 6879223 6879575 -28027995 - SVA Other Other -191 1195 857 59093 40 0 1 chr21 6879575 6886566 -28021004 - HERVK LTR ERVK -95 7148 162 8101 55 1 0 chr21 6886566 6887531 -28020039 - LTR5 LTR ERVK -3 966 1 26 30 0 0 chr21 6887612 6887645 -28019925 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 6887682 6887741 -28019829 + MIR SINE MIR 64 123 -139 365 235 72 47 chr21 6887866 6888090 -28019480 - LTR50 LTR ERVL -2 793 297 440 195 203 50 chr21 6888136 6888377 -28019193 - LTR50 LTR ERVL -387 408 131 2120 111 16 13 chr21 6888531 6888838 -28018732 - AluSg SINE Alu -2 308 1 183 42 0 0 chr21 6888873 6888897 -28018673 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 302 80 20 0 chr21 6890057 6890107 -28017463 + (GA)n Simple_repeat Simple_repeat 2 52 0 282 206 0 0 chr21 6890103 6890171 -28017399 + GA-rich Low_complexity Low_complexity 2 69 0 3348 117 2 34 chr21 6890523 6891060 -28016510 - L1PB2 LINE L1 -2 6149 5630 548 192 0 8 chr21 6891060 6891190 -28016380 + L1 LINE L1 5180 5308 -838 7637 196 16 21 chr21 6891182 6893072 -28014498 - L1PBb LINE L1 -2105 4098 2173 2116 111 3 3 chr21 6893072 6893370 -28014200 - AluY SINE Alu -13 298 1 7637 196 16 21 chr21 6893370 6895219 -28012351 - L1PBb LINE L1 -4030 2173 317 505 196 0 0 chr21 6895878 6895970 -28011600 - L1PBb LINE L1 -5421 783 692 243 0 0 0 chr21 6895970 6895997 -28011573 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 345 284 33 8 chr21 6896162 6896353 -28011217 + LTR16C LTR ERVL 97 329 -162 447 342 32 0 chr21 6897337 6897527 -28010043 + LTR16C LTR ERVL 97 292 -199 1157 312 44 48 chr21 6900573 6901076 -28006494 + MER45C DNA AcHobo 3 503 -450 587 148 0 0 chr21 6903106 6903194 -28004376 + AluSp SINE Alu 132 219 -94 2377 41 0 7 chr21 6904125 6904417 -28003153 - AluY SINE Alu -21 290 1 273 119 0 0 chr21 6906384 6906426 -28001144 + (A)n Simple_repeat Simple_repeat 1 42 0 1945 311 81 59 chr21 6907739 6908985 -27998585 + L2 LINE L2 338 1610 -1704 218 325 88 18 chr21 6910742 6910856 -27996714 + L3 LINE CR1 382 503 -1074 25 0 0 0 chr21 6911064 6911089 -27996481 + AT_rich Low_complexity Low_complexity 1 25 0 854 62 0 9 chr21 6911541 6911654 -27995916 - L1PA7 LINE L1 -5 6149 6038 1050 312 8 3 chr21 6912914 6913267 -27994303 - HAL1 LINE L1 -584 1923 1569 216 191 0 0 chr21 6913517 6913559 -27994011 + T-rich Low_complexity Low_complexity 1 42 0 587 238 48 34 chr21 6913823 6914092 -27993478 - HAL1 LINE L1 -1414 1093 821 22 56 0 0 chr21 6914306 6914342 -27993228 + AT_rich Low_complexity Low_complexity 1 36 0 621 327 124 39 chr21 6914363 6914871 -27992699 - L1PBb LINE L1 -1945 619 69 4277 45 33 0 chr21 6914881 6915420 -27992150 + L1PA5 LINE L1 5598 6154 0 1571 133 0 0 chr21 6916289 6916514 -27991056 + AluSx SINE Alu 1 225 -87 624 120 0 56 chr21 6916514 6916622 -27990948 + AluSg/x SINE Alu 191 292 -17 198 0 0 0 chr21 6916710 6916732 -27990838 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6436 67 8 0 chr21 6916732 6917940 -27989630 - L1PA7 LINE L1 -18 6136 4903 208 158 35 35 chr21 6918068 6918125 -27989445 + CT-rich Low_complexity Low_complexity 4 60 0 21 36 0 0 chr21 6918702 6918730 -27988840 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 6919263 6919291 -27988279 + AT_rich Low_complexity Low_complexity 1 28 0 1434 193 10 53 chr21 6921102 6921403 -27986167 - AluJo SINE Alu -22 290 3 225 132 15 29 chr21 6922095 6922163 -27985407 + (TTA)n Simple_repeat Simple_repeat 1 67 0 711 279 52 28 chr21 6922202 6922453 -27985117 - MIR SINE MIR -2 260 4 180 125 0 0 chr21 6922694 6922726 -27984844 + (CTTTG)n Simple_repeat Simple_repeat 3 34 0 1271 215 12 80 chr21 6923388 6923788 -27983782 + MLT1A2 LTR MaLR 1 373 -1 22 0 0 0 chr21 6924393 6924415 -27983155 + AT_rich Low_complexity Low_complexity 1 22 0 31 88 0 0 chr21 6925047 6925127 -27982443 + AT_rich Low_complexity Low_complexity 1 80 0 261 167 0 0 chr21 6927361 6927415 -27980155 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr21 6927642 6927663 -27979907 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 6927792 6927830 -27979740 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr21 6928558 6928590 -27978980 + AT_rich Low_complexity Low_complexity 1 32 0 244 387 66 15 chr21 6928731 6928868 -27978702 + L2 LINE L2 3129 3272 0 699 204 0 7 chr21 6929554 6929691 -27977879 + MLT1A1 LTR MaLR 13 148 -217 207 98 49 24 chr21 6929814 6929855 -27977715 + A-rich Low_complexity Low_complexity 6 47 0 1306 201 24 54 chr21 6930339 6930588 -27976982 - MSTD LTR MaLR 0 396 156 1616 123 0 0 chr21 6930588 6930816 -27976754 + AluSg/x SINE Alu 83 310 0 1306 201 24 54 chr21 6930816 6930864 -27976706 - MSTD LTR MaLR -240 156 108 704 368 20 0 chr21 6931070 6931372 -27976198 + MLT1I LTR MaLR 92 399 -10 342 275 13 87 chr21 6931374 6931418 -27976152 + MLT2F LTR ERVL 1 47 -616 369 0 0 0 chr21 6931418 6931459 -27976111 + (CA)n Simple_repeat Simple_repeat 2 42 0 1621 194 0 0 chr21 6931461 6931749 -27975821 - AluJb SINE Alu -24 288 1 342 275 13 87 chr21 6931749 6931850 -27975720 + MLT2F LTR ERVL 48 138 -525 278 274 17 26 chr21 6932044 6932161 -27975409 + MLT2F LTR ERVL 546 661 -2 22 0 0 0 chr21 6934699 6934721 -27972849 + AT_rich Low_complexity Low_complexity 1 22 0 254 266 77 70 chr21 6937920 6938232 -27969338 + HAL1 LINE L1 1033 1346 -1161 21 0 0 0 chr21 6938234 6938255 -27969315 + AT_rich Low_complexity Low_complexity 1 21 0 1584 215 24 53 chr21 6939858 6940313 -27967257 - LTR47B LTR ERVL -1 442 1 213 246 0 64 chr21 6941333 6941443 -27966127 + A-rich Low_complexity Low_complexity 3 105 0 1092 311 29 23 chr21 6941875 6942261 -27965309 - LTR16C LTR ERVL 0 491 104 351 340 43 21 chr21 6942823 6943102 -27964468 - L1ME LINE L1 -582 6002 5718 26 64 0 0 chr21 6943106 6943153 -27964417 + AT_rich Low_complexity Low_complexity 1 47 0 218 200 0 0 chr21 6943794 6943844 -27963726 + T-rich Low_complexity Low_complexity 1 50 0 1565 37 0 0 chr21 6943851 6944042 -27963528 - L1PA3 LINE L1 0 6155 5965 30 45 0 0 chr21 6944096 6944140 -27963430 + AT_rich Low_complexity Low_complexity 1 44 0 2062 255 54 45 chr21 6944913 6947119 -27960451 - L1MCb LINE L1 -3212 3352 822 1923 168 60 3 chr21 6947119 6947500 -27960070 + MER57A LTR ERV1 1 403 0 2062 255 54 45 chr21 6947500 6948200 -27959370 - L1MCb LINE L1 -5742 822 130 271 306 9 18 chr21 6948216 6948327 -27959243 - L1MCb LINE L1 -6291 273 164 198 0 0 0 chr21 6948373 6948395 -27959175 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 23 54 0 0 chr21 6949691 6949728 -27957842 + AT_rich Low_complexity Low_complexity 1 37 0 350 284 88 100 chr21 6950110 6950600 -27956970 - MLT1H1 LTR MaLR -12 543 60 255 31 0 0 chr21 6950739 6950771 -27956799 + (TG)n Simple_repeat Simple_repeat 2 33 0 26 50 0 0 chr21 6951162 6951202 -27956368 + AT_rich Low_complexity Low_complexity 1 40 0 27 0 0 0 chr21 6951741 6951768 -27955802 + AT_rich Low_complexity Low_complexity 1 27 0 738 235 20 6 chr21 6951828 6953011 -27954559 + L1PA14 LINE L1 1564 2820 -3326 1957 154 18 6 chr21 6953016 6953348 -27954222 + THE1C LTR MaLR 3 338 -37 11813 184 30 0 chr21 6953358 6953705 -27953865 + L1PA14 LINE L1 2815 3150 -3011 438 20 0 0 chr21 6953705 6953756 -27953814 + (CA)n Simple_repeat Simple_repeat 2 52 0 11813 184 30 0 chr21 6953756 6956694 -27950876 + L1PA14 LINE L1 3150 6148 -13 21 0 0 0 chr21 6956695 6956716 -27950854 + AT_rich Low_complexity Low_complexity 1 21 0 381 295 8 8 chr21 6956824 6956953 -27950617 - L1ME3A LINE L1 -207 5963 5835 218 81 27 0 chr21 6956998 6957035 -27950535 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 250 0 0 chr21 6957107 6957167 -27950403 + GA-rich Low_complexity Low_complexity 1 60 0 552 296 49 33 chr21 6957174 6957542 -27950028 - L1ME3A LINE L1 -535 5629 5256 522 376 35 3 chr21 6957679 6958022 -27949548 - L1ME3A LINE L1 -1059 5087 4734 28 29 0 0 chr21 6958372 6958407 -27949163 + AT_rich Low_complexity Low_complexity 1 35 0 1137 332 42 15 chr21 6959327 6959975 -27947595 - L1ME3A LINE L1 -2923 3223 2559 1718 269 60 40 chr21 6960058 6960310 -27947260 - L1ME1 LINE L1 -5 6161 5916 2175 203 5 7 chr21 6960310 6960728 -27946842 - MER47B DNA MER2_type -1 417 1 1718 269 60 40 chr21 6960728 6961126 -27946444 - L1ME1 LINE L1 -250 5916 5498 252 323 82 32 chr21 6962027 6962185 -27945385 + MIR SINE MIR 13 178 -84 572 266 87 60 chr21 6962453 6962822 -27944748 + MER34 LTR ERV1 161 539 -3 707 173 154 0 chr21 6963081 6963237 -27944333 - MLT1D LTR MaLR 0 505 326 2013 130 3 9 chr21 6963269 6963584 -27943986 - MER4A LTR ERV1 -2 662 350 788 88 9 0 chr21 6963614 6963727 -27943843 - MER4A LTR ERV1 -306 358 245 299 125 0 0 chr21 6963733 6963781 -27943789 - MER4A LTR ERV1 -616 48 1 452 218 62 87 chr21 6963782 6964032 -27943538 - MLT1D LTR MaLR -198 269 19 2115 105 7 0 chr21 6965239 6965525 -27942045 - AluSg SINE Alu -11 299 12 535 14 14 14 chr21 6966394 6966467 -27941103 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 22 0 0 0 chr21 6966537 6966559 -27941011 + AT_rich Low_complexity Low_complexity 1 22 0 384 252 94 31 chr21 6967031 6967190 -27940380 - MIR SINE MIR -8 254 86 995 243 14 0 chr21 6968030 6968252 -27939318 + MER58B DNA MER1_type 116 340 -1 841 241 0 0 chr21 6968634 6968800 -27938770 + FRAM SINE Alu 1 166 0 21 104 0 0 chr21 6969766 6969843 -27937727 + AT_rich Low_complexity Low_complexity 1 77 0 972 201 50 39 chr21 6970074 6970203 -27937367 + MSTD LTR MaLR 23 149 -247 2067 131 3 0 chr21 6970203 6970508 -27937062 + AluSx SINE Alu 1 306 -6 972 201 50 39 chr21 6970508 6970705 -27936865 + MSTD LTR MaLR 149 396 0 266 325 50 25 chr21 6971636 6971796 -27935774 - MIR SINE MIR -12 250 87 349 340 62 72 chr21 6972095 6972245 -27935325 + L3 LINE CR1 970 1120 -457 2155 114 0 19 chr21 6972245 6972560 -27935010 + AluSg SINE Alu 1 309 -1 349 340 62 72 chr21 6972560 6972782 -27934788 + L3 LINE CR1 1120 1338 -239 26 30 0 0 chr21 6973510 6973543 -27934027 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr21 6973862 6973883 -27933687 + AT_rich Low_complexity Low_complexity 1 21 0 761 148 35 9 chr21 6974702 6974862 -27932708 - L1PA16 LINE L1 -439 5726 5555 1770 169 73 5 chr21 6974849 6975253 -27932317 + L1PA16 LINE L1 5700 6166 0 21 0 0 0 chr21 6975287 6975308 -27932262 + AT_rich Low_complexity Low_complexity 1 21 0 2432 81 0 3 chr21 6975308 6975617 -27931953 - AluY SINE Alu -3 308 1 1941 255 65 34 chr21 6977024 6977780 -27929790 - L1ME1 LINE L1 -5 6230 5452 337 244 0 12 chr21 6977781 6977863 -27929707 - L1ME1 LINE L1 -6280 116 36 209 135 27 0 chr21 6977888 6977925 -27929645 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 252 314 128 0 chr21 6978246 6978348 -27929222 + L2 LINE L2 3199 3313 0 21 57 0 0 chr21 6978385 6978420 -27929150 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr21 6978682 6978733 -27928837 + AT_rich Low_complexity Low_complexity 1 51 0 327 79 13 158 chr21 6979892 6979968 -27927602 + MER4E LTR ERV1 1 65 -545 186 43 0 0 chr21 6980060 6980083 -27927487 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2858 115 24 12 chr21 6980100 6980639 -27926931 + MER4E LTR ERV1 56 766 0 3775 241 21 47 chr21 6980898 6981922 -27925648 - MSTD-int LTR MaLR -736 999 2 1366 221 33 40 chr21 6981924 6982323 -27925247 - MSTD LTR MaLR 0 396 1 282 277 0 12 chr21 6982334 6982417 -27925153 - MLT1E2 LTR MaLR -340 286 205 2488 54 0 0 chr21 6982988 6983285 -27924285 - AluY SINE Alu -10 301 5 21 0 0 0 chr21 6986378 6986399 -27921171 + AT_rich Low_complexity Low_complexity 1 21 0 451 329 101 14 chr21 6986571 6986790 -27920780 + MLT1J LTR MaLR 96 333 -178 2470 61 0 6 chr21 6987177 6987490 -27920080 + AluY SINE Alu 1 311 0 435 38 0 0 chr21 6987993 6988046 -27919524 + (TTA)n Simple_repeat Simple_repeat 2 54 0 2527 213 29 13 chr21 6988053 6988574 -27918996 + LTR31 LTR ERV1 75 603 -16 1605 178 110 10 chr21 6988586 6988985 -27918585 + L1MA3 LINE L1 3323 3761 -2385 1082 108 7 0 chr21 6988986 6989134 -27918436 - AluSq/x SINE Alu -164 149 1 6543 151 18 10 chr21 6989134 6991092 -27916478 + L1MA3 LINE L1 4323 6295 -10 23 0 0 0 chr21 6991396 6991419 -27916151 + AT_rich Low_complexity Low_complexity 1 23 0 517 91 0 0 chr21 6991713 6991790 -27915780 - L1MA1 LINE L1 -2 6300 6224 420 174 25 0 chr21 6992761 6992882 -27914688 + (TA)n Simple_repeat Simple_repeat 2 125 0 1124 281 60 50 chr21 6993531 6994086 -27913484 + L1MEc LINE L1 250 809 -5798 888 209 5 24 chr21 6994090 6994296 -27913274 + L1MD3 LINE L1 7778 7979 -16 343 318 46 29 chr21 6994807 6994980 -27912590 + L1ME3A LINE L1 5965 6140 -30 317 284 0 0 chr21 6995656 6995744 -27911826 - MER69 DNA AcHobo 0 2526 2439 289 237 132 0 chr21 6995753 6995829 -27911741 - MER69 DNA AcHobo -2394 132 47 2121 317 50 55 chr21 6999778 7000813 -27906757 - L2 LINE L2 -1007 2307 1278 2344 72 0 25 chr21 7000813 7001132 -27906438 - AluY SINE Alu 0 311 1 2121 317 50 55 chr21 7001132 7001286 -27906284 - L2 LINE L2 -2036 1278 1125 1204 219 51 56 chr21 7001502 7001718 -27905852 - MLT1B LTR MaLR 0 390 175 222 37 0 0 chr21 7001718 7001745 -27905825 + (TG)n Simple_repeat Simple_repeat 2 28 0 1204 219 51 56 chr21 7001745 7001920 -27905650 - MLT1B LTR MaLR -215 175 1 1347 193 19 57 chr21 7002654 7003006 -27904564 + AluJb SINE Alu 5 344 0 325 312 45 32 chr21 7003007 7003164 -27904406 + L1MEc LINE L1 1550 1708 -4718 2273 264 52 4 chr21 7003500 7004057 -27903513 - MER45B DNA AcHobo -455 585 2 1239 284 14 40 chr21 7004158 7004313 -27903257 + L1M4 LINE L1 4351 4509 -1637 507 117 13 0 chr21 7004313 7004390 -27903180 - MADE1 DNA Mariner -2 78 1 1239 284 14 40 chr21 7004390 7004809 -27902761 + L1M4 LINE L1 4509 4910 -1236 1825 146 34 71 chr21 7005062 7005440 -27902130 - THE1B LTR MaLR 0 364 1 886 226 20 15 chr21 7006732 7006936 -27900634 + MLT2C2 LTR ERVL 1 205 -259 1819 221 69 13 chr21 7007032 7007484 -27900086 + ERVL LTR ERVL 761 1237 -4527 605 164 27 68 chr21 7007493 7007639 -27899931 - ERVL LTR ERVL -4027 1737 1598 1954 209 78 7 chr21 7007640 7008061 -27899509 + ERVL LTR ERVL 1719 2169 -3595 1856 202 9 3 chr21 7008056 7008402 -27899168 + ERVL LTR ERVL 2368 2715 -3049 295 258 0 0 chr21 7008555 7008621 -27898949 + ERVL LTR ERVL 2650 2715 -3049 324 261 0 0 chr21 7008917 7008986 -27898584 + ERVL LTR ERVL 2647 2715 -3049 371 214 0 0 chr21 7008989 7009059 -27898511 + ERVL LTR ERVL 2646 2715 -3049 3168 63 65 0 chr21 7009075 7009519 -27898051 - L1P LINE L1 -1460 4686 4214 1944 116 50 47 chr21 7009999 7010041 -27897529 - THE1B LTR MaLR 0 364 324 1934 125 6 41 chr21 7010041 7010361 -27897209 + AluSg SINE Alu 1 309 -1 1944 116 50 47 chr21 7010361 7010681 -27896889 - THE1B LTR MaLR -40 324 1 11203 108 6 7 chr21 7010681 7012262 -27895308 - THE1B-int LTR MaLR 0 1580 1 1852 113 96 38 chr21 7012262 7012606 -27894964 - THE1B LTR MaLR 0 364 1 411 348 67 42 chr21 7012918 7013320 -27894250 - L1ME3A LINE L1 -286 5884 5473 3787 153 68 9 chr21 7013528 7013753 -27893817 + L1MA9 LINE L1 5531 5741 -571 288 0 0 0 chr21 7013753 7013785 -27893785 + (CA)n Simple_repeat Simple_repeat 1 32 0 3787 153 68 9 chr21 7013785 7014293 -27893277 + L1MA9 LINE L1 5741 6307 -5 1229 154 14 36 chr21 7014372 7014389 -27893181 - AluJb SINE Alu -13 299 283 207 0 0 0 chr21 7014389 7014412 -27893158 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1229 154 14 36 chr21 7014412 7014615 -27892955 - AluJb SINE Alu -29 283 84 302 274 16 86 chr21 7014670 7014856 -27892714 + L1ME2 LINE L1 4233 4405 -1741 233 250 34 11 chr21 7015059 7015147 -27892423 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 2281 256 68 24 chr21 7015405 7016063 -27891507 + L1ME2 LINE L1 5126 5847 -317 180 0 0 0 chr21 7016063 7016083 -27891487 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2281 256 68 24 chr21 7016083 7016396 -27891174 + L1ME2 LINE L1 5847 6145 -19 820 172 25 0 chr21 7016662 7016819 -27890751 + MER47A DNA MER2_type 61 221 -145 23 0 0 0 chr21 7016913 7016936 -27890634 + AT_rich Low_complexity Low_complexity 1 23 0 1787 162 28 9 chr21 7017869 7018189 -27889381 + MER47A DNA MER2_type 2 327 -39 2951 162 16 16 chr21 7018192 7018704 -27888866 + MSTA-int LTR MaLR 1063 1574 -6 2040 139 132 5 chr21 7018709 7019089 -27888481 + MSTA LTR MaLR 1 428 0 849 227 11 0 chr21 7019562 7019738 -27887832 - MSTD LTR MaLR 0 396 219 299 229 8 74 chr21 7020263 7020385 -27887185 + L1ME1 LINE L1 5964 6079 -85 42 48 0 0 chr21 7020445 7020508 -27887062 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr21 7020700 7020743 -27886827 + AT_rich Low_complexity Low_complexity 1 43 0 434 275 46 60 chr21 7021437 7021682 -27885888 + L1MD3 LINE L1 7337 7670 -325 1914 173 21 0 chr21 7022047 7022383 -27885187 + MER2 DNA MER2_type 2 344 0 431 133 40 0 chr21 7022598 7022673 -27884897 - MADE1 DNA Mariner -2 78 1 45 87 0 0 chr21 7022749 7022864 -27884706 + AT_rich Low_complexity Low_complexity 1 115 0 1111 223 59 74 chr21 7022901 7023238 -27884332 + MLT2D LTR ERVL 83 414 0 610 293 78 48 chr21 7023241 7023675 -27883895 + L1ME LINE L1 4385 4831 -1315 445 303 77 17 chr21 7024037 7024311 -27883259 + L1ME LINE L1 5352 5643 -519 1808 150 85 21 chr21 7024379 7024719 -27882851 + THE1B LTR MaLR 1 362 -2 1040 184 0 39 chr21 7024895 7025101 -27882469 + Tigger2a DNA MER2_type 1 198 -236 192 315 0 0 chr21 7025101 7025212 -27882358 + C-rich Low_complexity Low_complexity 3 113 0 1839 143 41 0 chr21 7025212 7025506 -27882064 - AluSx SINE Alu -6 306 1 954 126 24 2 chr21 7025506 7025712 -27881858 + Tigger2a DNA MER2_type 193 443 -1 21 0 0 0 chr21 7026872 7026893 -27880677 + AT_rich Low_complexity Low_complexity 1 21 0 29 84 0 0 chr21 7026941 7027012 -27880558 + AT_rich Low_complexity Low_complexity 1 71 0 327 282 117 22 chr21 7027043 7027203 -27880367 + MER20B DNA MER1_type 5 178 -41 289 333 39 46 chr21 7027892 7028045 -27879525 + L2 LINE L2 2301 2452 -862 991 145 0 10 chr21 7028200 7028393 -27879177 + L1MA6 LINE L1 6110 6300 0 22 0 0 0 chr21 7028399 7028421 -27879149 + AT_rich Low_complexity Low_complexity 1 22 0 313 284 15 30 chr21 7029088 7029222 -27878348 + L1M4 LINE L1 4473 4604 -1542 1771 150 82 20 chr21 7029700 7030053 -27877517 + THE1C LTR MaLR 1 375 0 9582 118 36 46 chr21 7030053 7031649 -27875921 + THE1C-int LTR MaLR 1 1580 0 1945 132 76 20 chr21 7031649 7032004 -27875566 + THE1C LTR MaLR 1 375 0 2005 131 0 7 chr21 7032324 7032614 -27874956 + AluSc SINE Alu 1 288 -21 246 220 0 0 chr21 7033028 7033087 -27874483 + (TA)n Simple_repeat Simple_repeat 2 60 0 253 190 38 0 chr21 7033283 7033362 -27874208 + CT-rich Low_complexity Low_complexity 2 83 0 264 130 0 0 chr21 7034535 7034581 -27872989 + (TG)n Simple_repeat Simple_repeat 1 46 0 246 136 0 0 chr21 7034900 7034944 -27872626 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 1507 237 17 11 chr21 7035543 7035902 -27871668 - MLT1A1 LTR MaLR 0 365 5 1704 214 88 38 chr21 7037454 7037931 -27869639 + MER21B LTR ERV1 147 647 -216 22 35 0 0 chr21 7038898 7038927 -27868643 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 7039021 7039056 -27868514 + AT_rich Low_complexity Low_complexity 1 35 0 3451 155 43 41 chr21 7039723 7040447 -27867123 + LTR8A LTR ERV1 3 727 0 189 74 0 0 chr21 7040851 7040878 -27866692 + (TTA)n Simple_repeat Simple_repeat 1 27 0 655 263 27 49 chr21 7042339 7042563 -27865007 + MER20 DNA MER1_type 1 219 0 2213 259 55 48 chr21 7042619 7043452 -27864118 + L1 LINE L1 5 843 -6006 390 43 0 0 chr21 7043483 7043530 -27864040 - L1PA4 LINE L1 -262 5892 5846 2318 32 0 0 chr21 7043530 7043844 -27863726 + L1PA4 LINE L1 5876 6190 0 362 289 18 54 chr21 7043969 7044116 -27863454 + L1 LINE L1 790 949 -5900 1464 216 5 35 chr21 7044131 7044525 -27863045 + L1MA4 LINE L1 2734 3115 -3031 31 0 0 0 chr21 7044525 7044556 -27863014 + AT_rich Low_complexity Low_complexity 1 31 0 547 191 118 0 chr21 7044560 7044670 -27862900 - FLAM_C SINE Alu -10 123 1 9903 181 28 33 chr21 7044671 7047647 -27859923 + L1MA4 LINE L1 3100 6055 -245 236 351 0 14 chr21 7047885 7047959 -27859611 + L2 LINE L2 3150 3222 -50 21 57 0 0 chr21 7049058 7049093 -27858477 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr21 7049549 7049591 -27857979 + AT_rich Low_complexity Low_complexity 1 42 0 3188 111 43 11 chr21 7049760 7050294 -27857276 - L1MA2 LINE L1 0 6304 5754 2016 138 45 17 chr21 7050296 7050650 -27856920 + THE1B LTR MaLR 1 364 0 10777 109 4 1 chr21 7050653 7052136 -27855434 + THE1B-int LTR MaLR 94 1580 0 1815 186 49 9 chr21 7052136 7052486 -27855084 + THE1B LTR MaLR 1 364 0 5990 166 33 15 chr21 7052486 7054148 -27853422 - L1MA2 LINE L1 -567 5737 4049 1406 195 19 39 chr21 7054328 7054636 -27852934 + AluJb SINE Alu 11 312 0 27 0 0 0 chr21 7055234 7055261 -27852309 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr21 7056482 7056505 -27851065 + AT_rich Low_complexity Low_complexity 1 23 0 357 24 0 0 chr21 7059925 7059967 -27847603 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 157 57 0 chr21 7060743 7060813 -27846757 - MER53 DNA DNA 0 189 116 335 115 141 0 chr21 7060753 7060831 -27846739 + MER53 DNA DNA 20 108 -81 180 366 39 20 chr21 7062962 7063115 -27844455 + L2 LINE L2 1758 1913 -1401 254 236 32 0 chr21 7063910 7064033 -27843537 + (TA)n Simple_repeat Simple_repeat 2 128 0 24 32 0 0 chr21 7064061 7064092 -27843478 + AT_rich Low_complexity Low_complexity 1 31 0 203 167 62 7 chr21 7064138 7064282 -27843288 + (TA)n Simple_repeat Simple_repeat 1 152 0 670 188 12 0 chr21 7064404 7064564 -27843006 + (TA)n Simple_repeat Simple_repeat 2 163 0 339 171 0 0 chr21 7064582 7064658 -27842912 + (TA)n Simple_repeat Simple_repeat 2 77 0 547 294 73 47 chr21 7065475 7066025 -27841545 - L1ME3A LINE L1 -224 5946 5383 2291 114 0 3 chr21 7066257 7066564 -27841006 - AluSx SINE Alu -6 306 1 31 26 0 0 chr21 7066596 7066634 -27840936 + AT_rich Low_complexity Low_complexity 1 38 0 1654 206 8 48 chr21 7066634 7067007 -27840563 - MER52A LTR ERV1 -1397 358 1 1149 212 30 8 chr21 7067091 7067355 -27840215 + L1MD3 LINE L1 7574 7843 -152 809 206 16 11 chr21 7067359 7067548 -27840022 - MER4C LTR ERV1 0 465 276 362 242 67 58 chr21 7067759 7067879 -27839691 - MER4C LTR ERV1 -209 256 136 259 213 40 13 chr21 7067902 7067977 -27839593 - LTR24B LTR ERV1 -499 77 1 6495 168 47 20 chr21 7068040 7069207 -27838363 + MER52A LTR ERV1 557 1755 0 1728 147 17 22 chr21 7069342 7069689 -27837881 - MER4A LTR ERV1 0 664 261 648 121 0 10 chr21 7069689 7069788 -27837782 - MER4A LTR ERV1 -566 98 1 2587 46 0 0 chr21 7069797 7070103 -27837467 - AluY SINE Alu -5 306 1 262 311 38 15 chr21 7070384 7070516 -27837054 - L1MEd LINE L1 -5812 307 173 22 35 0 0 chr21 7070562 7070591 -27836979 + AT_rich Low_complexity Low_complexity 1 29 0 551 245 0 0 chr21 7070859 7070965 -27836605 + MER46B DNA MER2_type 1 106 -255 5983 67 13 13 chr21 7070967 7071745 -27835825 - LTR17 LTR ERV1 -2 778 1 2323 68 0 0 chr21 7071745 7072037 -27835533 - HERV17 LTR ERV1 0 8626 8335 299 51 0 0 chr21 7072027 7072066 -27835504 - HERV17 LTR ERV1 -1078 7548 7510 47722 60 11 2 chr21 7072059 7078028 -27829542 - HERV17 LTR ERV1 -2607 6019 1 5782 79 18 13 chr21 7078028 7078772 -27828798 - LTR17 LTR ERV1 -32 748 1 1237 165 89 0 chr21 7078772 7079008 -27828562 + MER46B DNA MER2_type 103 234 -2 25 0 0 0 chr21 7079311 7079336 -27828234 + AT_rich Low_complexity Low_complexity 1 25 0 1493 186 32 32 chr21 7079890 7080175 -27827395 + AluJo SINE Alu 4 288 -24 23 33 0 0 chr21 7080217 7080247 -27827323 + AT_rich Low_complexity Low_complexity 1 30 0 970 189 77 20 chr21 7080450 7080786 -27826784 - MSTD LTR MaLR 0 396 1 5410 275 47 28 chr21 7080791 7082488 -27825082 - MSTD-int LTR MaLR -6 1729 2 878 229 6 6 chr21 7082490 7082669 -27824901 - MSTD LTR MaLR 0 396 218 476 316 0 0 chr21 7082708 7082825 -27824745 - MSTD LTR MaLR -310 118 2 3760 114 35 122 chr21 7082870 7083730 -27823840 + LTR1 LTR ERV1 1 785 0 1714 180 41 39 chr21 7085402 7085791 -27821779 - MLT1B LTR MaLR 0 390 1 602 236 52 47 chr21 7086376 7086567 -27821003 + MIR SINE MIR 60 251 -11 1404 214 83 32 chr21 7087148 7087555 -27820015 + MSTC LTR MaLR 1 428 0 23 0 0 0 chr21 7089327 7089350 -27818220 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 7089632 7089654 -27817916 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr21 7091506 7091547 -27816023 + AT_rich Low_complexity Low_complexity 1 41 0 2710 205 16 4 chr21 7091685 7092201 -27815369 + Tigger7 DNA MER2_type 4 525 -208 559 139 58 0 chr21 7092195 7092281 -27815289 + Tigger7 DNA MER2_type 2396 2486 -1 1960 200 21 71 chr21 7092783 7093359 -27814211 + LTR27 LTR ERV1 3 620 -141 3549 233 68 29 chr21 7094315 7095217 -27812353 - Charlie1a DNA MER1_type -1320 1441 442 2101 189 153 10 chr21 7095217 7095708 -27811862 - MER68 LTR ERV1 -1 561 1 3549 233 68 29 chr21 7095708 7096169 -27811401 - Charlie1a DNA MER1_type -2319 442 1 1865 125 0 0 chr21 7096531 7096787 -27810783 - AluSx SINE Alu -17 295 40 242 354 23 23 chr21 7097700 7097830 -27809740 + L2 LINE L2 3134 3263 -9 485 221 8 0 chr21 7097843 7097965 -27809605 + L1M4 LINE L1 4745 4867 -1279 1681 127 52 0 chr21 7097979 7098231 -27809339 + MER41C LTR ERV1 1 265 -289 2008 119 0 0 chr21 7098233 7098501 -27809069 + AluSx SINE Alu 1 268 -44 636 93 0 0 chr21 7098501 7098587 -27808983 + AluSg/x SINE Alu 216 301 -8 1499 156 41 0 chr21 7098589 7098858 -27808712 + MER41C LTR ERV1 273 552 -2 346 127 130 7 chr21 7098869 7098946 -27808624 - THE1B LTR MaLR -97 260 184 201 161 36 18 chr21 7099079 7099135 -27808435 + (TA)n Simple_repeat Simple_repeat 1 57 0 1945 209 21 5 chr21 7099135 7099560 -27808010 + Tigger2a DNA MER2_type 2 433 -1 21 57 0 0 chr21 7101362 7101397 -27806173 + AT_rich Low_complexity Low_complexity 1 35 0 2460 119 16 3 chr21 7101823 7102193 -27805377 - THE1C LTR MaLR 0 375 1 1517 149 38 101 chr21 7103660 7103933 -27803637 - L1MA8 LINE L1 -3 6288 6048 1852 165 10 0 chr21 7103933 7104224 -27803346 + AluSx SINE Alu 1 294 -18 1517 149 38 101 chr21 7104224 7104367 -27803203 - L1MA8 LINE L1 -243 6048 5898 642 282 56 30 chr21 7104577 7104811 -27802759 + MIR SINE MIR 20 259 -3 289 388 104 13 chr21 7105088 7105472 -27802098 + L2 LINE L2 2440 2858 -456 4376 36 0 1 chr21 7106414 7107033 -27800537 - L1PA4 LINE L1 -713 5442 4869 5908 37 1 0 chr21 7107033 7107733 -27799837 + L1PA4 LINE L1 5447 6155 0 297 0 0 0 chr21 7108642 7108675 -27798895 + (CA)n Simple_repeat Simple_repeat 2 34 0 393 305 44 22 chr21 7108950 7109176 -27798394 - L1ME3A LINE L1 -315 5855 5625 514 104 13 0 chr21 7109281 7109358 -27798212 + MADE1 DNA Mariner 1 78 -2 2424 105 19 11 chr21 7109377 7109738 -27797832 + THE1C LTR MaLR 1 364 -11 23 0 0 0 chr21 7109874 7109897 -27797673 + AT_rich Low_complexity Low_complexity 1 23 0 803 83 25 0 chr21 7110020 7110141 -27797429 - Alu SINE Alu -13 297 174 934 69 0 0 chr21 7110141 7110257 -27797313 - AluY SINE Alu -195 116 1 21 0 0 0 chr21 7110264 7110285 -27797285 + AT_rich Low_complexity Low_complexity 1 21 0 6240 150 49 12 chr21 7111170 7111763 -27795807 + Tigger3b DNA MER2_type 40 610 -2418 2269 108 0 3 chr21 7111763 7112070 -27795500 - AluSc SINE Alu -3 306 1 6240 150 49 12 chr21 7112070 7112625 -27794945 + Tigger3b DNA MER2_type 610 1230 -1 260 300 73 66 chr21 7112651 7114009 -27793561 - L1M4 LINE L1 -1777 4369 3003 2023 165 88 0 chr21 7114061 7114425 -27793145 + MER57A LTR ERV1 8 403 0 189 0 0 0 chr21 7114695 7114716 -27792854 + (A)n Simple_repeat Simple_repeat 1 21 0 1927 138 0 0 chr21 7114716 7114984 -27792586 + AluSx SINE Alu 1 268 -44 378 42 0 0 chr21 7114984 7115032 -27792538 + (CA)n Simple_repeat Simple_repeat 1 48 0 2113 141 22 33 chr21 7115516 7115884 -27791686 + THE1B LTR MaLR 1 364 0 11459 93 19 3 chr21 7115884 7117438 -27790132 + THE1B-int LTR MaLR 1 1580 0 2162 114 24 38 chr21 7117438 7117807 -27789763 + THE1B LTR MaLR 1 364 0 2381 46 7 0 chr21 7119092 7119375 -27788195 - AluSc SINE Alu -9 300 16 2232 121 0 9 chr21 7119980 7120295 -27787275 - AluSx SINE Alu 0 312 1 21 0 0 0 chr21 7121171 7121192 -27786378 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 7121603 7121626 -27785944 + AT_rich Low_complexity Low_complexity 1 23 0 2681 189 9 2 chr21 7121633 7122307 -27785263 - MER72 LTR ERV1 -7 715 5 3916 57 14 2 chr21 7122384 7122891 -27784679 + LTR10D LTR ERV1 1 513 0 794 303 58 16 chr21 7123331 7123763 -27783807 + HAL1 LINE L1 1391 1840 -667 2648 165 9 0 chr21 7123816 7124271 -27783299 + L1PB3 LINE L1 5689 6147 -7 25 31 0 0 chr21 7124644 7124676 -27782894 + AT_rich Low_complexity Low_complexity 1 32 0 249 108 0 0 chr21 7125605 7125642 -27781928 + (CA)n Simple_repeat Simple_repeat 2 38 0 226 308 177 8 chr21 7125656 7125786 -27781784 + L2 LINE L2 2259 2410 -904 278 337 0 0 chr21 7125873 7125965 -27781605 + L2 LINE L2 2563 2654 -660 2405 171 5 3 chr21 7126272 7126657 -27780913 - MSTA LTR MaLR 0 428 43 6566 86 5 2 chr21 7126657 7127522 -27780048 + HERVL-A2 LTR ERVL 4788 5654 0 3210 106 11 9 chr21 7127522 7127974 -27779596 + MLT2A2 LTR ERVL 1 453 0 6016 212 15 10 chr21 7127975 7129178 -27778392 - MSTA-int LTR MaLR -442 1209 1 2265 155 2 60 chr21 7129180 7129632 -27777938 - MSTA LTR MaLR -2 426 1 783 335 47 66 chr21 7129673 7130510 -27777060 - L2 LINE L2 -517 2797 1977 1292 163 60 82 chr21 7130627 7130946 -27776624 + THE1C LTR MaLR 29 340 -35 1477 173 68 0 chr21 7130946 7131224 -27776346 - AluSx SINE Alu -2 310 14 652 297 29 5 chr21 7131384 7131648 -27775922 - L2 LINE L2 -1612 1702 1386 497 355 36 9 chr21 7131738 7131972 -27775598 + L2 LINE L2 2789 3027 -286 323 302 110 39 chr21 7132240 7132422 -27775148 + HAL1 LINE L1 2226 2420 -87 21 0 0 0 chr21 7133063 7133084 -27774486 + AT_rich Low_complexity Low_complexity 1 21 0 350 173 13 0 chr21 7133414 7133489 -27774081 + (TG)n Simple_repeat Simple_repeat 1 76 0 381 88 0 18 chr21 7133967 7134024 -27773546 + MSTA LTR MaLR 5 60 -368 21 0 0 0 chr21 7137184 7137205 -27770365 + AT_rich Low_complexity Low_complexity 1 21 0 473 316 23 6 chr21 7138319 7138490 -27769080 - LTR16A LTR ERVL -2 448 275 21 26 0 26 chr21 7138736 7138751 -27768819 + AT_rich Low_complexity Low_complexity 1 15 -23 2517 65 0 0 chr21 7138751 7139060 -27768510 - AluY SINE Alu -2 309 1 21 26 0 26 chr21 7139060 7139083 -27768487 + AT_rich Low_complexity Low_complexity 15 38 0 22 0 0 0 chr21 7139106 7139128 -27768442 + AT_rich Low_complexity Low_complexity 1 22 0 6800 71 3 5 chr21 7139129 7140811 -27766759 - L1PA8 LINE L1 -8 6164 4481 532 74 0 37 chr21 7140813 7140894 -27766676 + L1PA8 LINE L1 4388 4465 -1681 234 139 0 0 chr21 7141264 7141300 -27766270 + U2 snRNA snRNA 1 36 -152 247 64 21 21 chr21 7144807 7144854 -27762716 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr21 7145548 7145571 -27761999 + AT_rich Low_complexity Low_complexity 1 23 0 234 192 0 0 chr21 7145633 7145685 -27761885 + GA-rich Low_complexity Low_complexity 2 53 0 186 209 0 0 chr21 7145984 7146027 -27761543 + A-rich Low_complexity Low_complexity 2 44 0 2008 117 0 3 chr21 7146183 7146507 -27761063 - AluSx SINE Alu 0 323 1 32 0 0 0 chr21 7147072 7147104 -27760466 + AT_rich Low_complexity Low_complexity 1 32 0 973 236 43 43 chr21 7147158 7147509 -27760061 - MER114 LTR ERV 0 648 298 37 23 0 0 chr21 7147829 7147873 -27759697 + AT_rich Low_complexity Low_complexity 1 44 0 2311 75 7 0 chr21 7147893 7148201 -27759369 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 7150026 7150049 -27757521 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1770 220 9 28 chr21 7151012 7151434 -27756136 + MLT2D LTR ERVL 1 414 0 204 0 54 27 chr21 7151985 7152022 -27755548 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 6090 82 17 2 chr21 7152024 7152863 -27754707 - L1PA8A LINE L1 -27 6104 5254 3749 107 9 0 chr21 7152861 7153405 -27754165 + L1PA8A LINE L1 4700 5248 -898 12491 250 35 12 chr21 7153403 7158656 -27748914 - L1PA16 LINE L1 -45 7559 2179 533 368 14 18 chr21 7158845 7159065 -27748505 - L1PA16 LINE L1 -6568 1006 788 23 33 0 0 chr21 7160614 7160644 -27746926 + AT_rich Low_complexity Low_complexity 1 30 0 321 313 65 60 chr21 7161474 7161675 -27745895 - MLT1H LTR MaLR -242 307 106 707 249 92 0 chr21 7162855 7163028 -27744542 + LTR16A LTR ERVL 253 441 -9 658 265 26 57 chr21 7163267 7163497 -27744073 - MIR SINE MIR -39 223 1 2355 170 16 21 chr21 7163498 7163934 -27743636 - Tigger2a DNA MER2_type 0 434 1 228 313 65 32 chr21 7164043 7164260 -27743310 - L2 LINE L2 -963 2351 2128 666 146 0 0 chr21 7164278 7164381 -27743189 + FLAM_A SINE Alu 18 120 -22 180 0 0 0 chr21 7164381 7164401 -27743169 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 27 92 0 0 chr21 7164942 7165018 -27742552 + AT_rich Low_complexity Low_complexity 1 76 0 21 36 0 0 chr21 7165663 7165691 -27741879 + AT_rich Low_complexity Low_complexity 1 28 0 2045 106 7 3 chr21 7165981 7166273 -27741297 + AluSc SINE Alu 1 293 -16 825 142 52 0 chr21 7166445 7166579 -27740991 + THE1-int LTR MaLR 150 290 -1290 1529 274 35 53 chr21 7166677 7167188 -27740382 + L1MDa LINE L1 33 534 -6006 269 266 2 0 chr21 7167189 7167255 -27740315 + L1MDa LINE L1 580 953 -5587 1710 161 28 34 chr21 7167322 7167675 -27739895 + THE1C LTR MaLR 25 375 0 7660 216 30 17 chr21 7167701 7169320 -27738250 + THE1C-int LTR MaLR 7 1645 -6 1752 166 32 29 chr21 7169325 7169699 -27737871 + THE1C LTR MaLR 1 375 0 613 166 127 59 chr21 7169699 7169870 -27737700 + L1MDa LINE L1 947 1105 -5435 4275 154 10 36 chr21 7169870 7170670 -27736900 - MER4E LTR ERV1 0 779 1 613 166 127 59 chr21 7170670 7170727 -27736843 + L1MDa LINE L1 1105 1157 -5383 2354 128 5 16 chr21 7170727 7171095 -27736475 - THE1B LTR MaLR 0 364 1 613 166 127 59 chr21 7171095 7171169 -27736401 + L1MDa LINE L1 1157 1225 -5315 2087 138 0 6 chr21 7171169 7171481 -27736089 + AluSg SINE Alu 1 310 0 613 166 127 59 chr21 7171481 7171502 -27736068 + L1MDa LINE L1 1225 1304 -5236 773 280 27 4 chr21 7171507 7171768 -27735802 + L1MDa LINE L1 2872 3138 -3402 775 202 32 36 chr21 7171853 7172101 -27735469 + L1MDa LINE L1 3180 3426 -3114 23 0 0 0 chr21 7172257 7172280 -27735290 + AT_rich Low_complexity Low_complexity 1 23 0 255 299 9 47 chr21 7173961 7174068 -27733502 - L2 LINE L2 -39 3274 3172 282 56 0 0 chr21 7174401 7174437 -27733133 + (TG)n Simple_repeat Simple_repeat 1 36 0 251 351 78 38 chr21 7175491 7175912 -27731658 - L2 LINE L2 -1491 1823 1386 1657 238 46 15 chr21 7177064 7177425 -27730145 + MLT2D LTR ERVL 1 376 -38 768 52 0 0 chr21 7177425 7177522 -27730048 + (TA)n Simple_repeat Simple_repeat 2 98 0 1657 238 46 15 chr21 7177522 7177551 -27730019 + MLT2D LTR ERVL 376 403 -11 607 217 0 17 chr21 7177666 7177786 -27729784 + FRAM SINE Alu 37 154 -22 21 36 0 0 chr21 7177980 7178008 -27729562 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 7178435 7178457 -27729113 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 7179179 7179207 -27728363 + AT_rich Low_complexity Low_complexity 1 28 0 1124 108 0 0 chr21 7179357 7179514 -27728056 + AluSg/x SINE Alu 139 295 -15 1007 302 99 64 chr21 7180269 7181038 -27726532 + L2 LINE L2 1595 2390 -924 327 273 55 18 chr21 7181178 7181288 -27726282 + L2 LINE L2 2597 2710 -604 29 0 0 0 chr21 7181560 7181589 -27725981 + AT_rich Low_complexity Low_complexity 1 29 0 13852 181 38 15 chr21 7182184 7183554 -27724016 - L1PA13 LINE L1 -4 7597 6261 1659 176 27 29 chr21 7183554 7183928 -27723642 + THE1C LTR MaLR 3 375 0 13852 181 38 15 chr21 7183928 7184379 -27723191 - L1PA13 LINE L1 -1340 6261 5822 1856 143 9 40 chr21 7184379 7184701 -27722869 - AluSx SINE Alu 0 312 1 13852 181 38 15 chr21 7184701 7186787 -27720783 - L1PA13 LINE L1 -1779 5822 3606 216 0 0 0 chr21 7187272 7187296 -27720274 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2153 232 13 15 chr21 7187297 7187841 -27719729 - L1PA13 LINE L1 -3975 3609 3067 1859 157 0 27 chr21 7187842 7188136 -27719434 + AluSx SINE Alu 1 286 -26 442 209 0 0 chr21 7188190 7188276 -27719294 - L1PA13 LINE L1 -4510 3071 2986 26 0 0 0 chr21 7188276 7188302 -27719268 + AT_rich Low_complexity Low_complexity 1 26 0 30647 32 1 1 chr21 7188302 7194327 -27713243 - L1PA3 LINE L1 -3 6152 4 3344 143 12 0 chr21 7194330 7194891 -27712679 - L1PA13 LINE L1 -4581 3000 2433 5236 251 42 16 chr21 7194937 7195133 -27712437 - L1PA13 LINE L1 -6202 1379 1190 1926 174 120 5 chr21 7195133 7195517 -27712053 - MSTA LTR MaLR 0 428 1 5236 251 42 16 chr21 7195517 7196657 -27710913 - L1PA13 LINE L1 -6391 1190 8 21 0 0 0 chr21 7196877 7196898 -27710672 + AT_rich Low_complexity Low_complexity 1 21 0 1918 159 7 0 chr21 7197622 7197931 -27709639 + AluSx SINE Alu 1 311 -1 674 299 11 0 chr21 7198762 7198946 -27708624 - MER5A DNA MER1_type -2 187 2 17614 119 22 9 chr21 7199596 7202268 -27705302 - Charlie3 DNA MER1_type -4 2706 2 4519 105 27 1 chr21 7202396 7202749 -27704821 - L1PB1 LINE L1 -1 6150 5807 342 0 0 0 chr21 7202749 7202787 -27704783 + (TG)n Simple_repeat Simple_repeat 2 39 0 4519 105 27 1 chr21 7202787 7203109 -27704461 - L1PB1 LINE L1 -344 5807 5458 342 0 0 0 chr21 7203497 7203535 -27704035 + (TG)n Simple_repeat Simple_repeat 2 39 0 730 206 8 0 chr21 7205831 7205962 -27701608 + AluJb SINE Alu 1 132 -180 871 218 6 0 chr21 7205996 7206166 -27701404 + AluJb SINE Alu 122 292 -20 24 53 0 0 chr21 7207377 7207415 -27700155 + AT_rich Low_complexity Low_complexity 1 38 0 373 291 0 16 chr21 7207649 7207776 -27699794 + (TA)n Simple_repeat Simple_repeat 2 126 0 1425 273 24 15 chr21 7207778 7208393 -27699177 + L1MC2 LINE L1 2681 3301 -2845 453 324 24 14 chr21 7208415 7208628 -27698942 + L1MC2 LINE L1 3421 3635 -2511 1140 224 81 36 chr21 7208631 7208966 -27698604 - MLT1A1 LTR MaLR -6 359 10 1971 237 40 20 chr21 7208972 7209580 -27697990 + L1MC2 LINE L1 3629 4248 -1898 2277 181 66 58 chr21 7209607 7210226 -27697344 + L1MC2 LINE L1 5706 6329 -15 192 77 0 0 chr21 7210253 7210279 -27697291 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr21 7210431 7210468 -27697102 + AT_rich Low_complexity Low_complexity 1 37 0 939 283 89 76 chr21 7210642 7211577 -27695993 - HAL1 LINE L1 -246 2261 1315 369 244 93 43 chr21 7211578 7211836 -27695734 - HAL1 LINE L1 -1224 1283 995 202 250 40 92 chr21 7212314 7212390 -27695180 - L2 LINE L2 0 3313 3242 1664 177 13 28 chr21 7214048 7214365 -27693205 + AluSx SINE Alu 1 312 0 189 147 0 0 chr21 7214673 7214707 -27692863 + (GA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr21 7215504 7215535 -27692035 + AT_rich Low_complexity Low_complexity 1 31 0 978 325 31 41 chr21 7215578 7215822 -27691748 - L1ME LINE L1 -4326 1935 1690 3699 111 19 7 chr21 7215822 7216406 -27691164 - L1PA13 LINE L1 -5 6158 5568 978 325 31 41 chr21 7216406 7216717 -27690853 - L1ME LINE L1 -4571 1690 1386 323 296 56 38 chr21 7216747 7217949 -27689621 - L1ME LINE L1 -4831 1249 3 203 253 0 53 chr21 7218855 7218950 -27688620 + (CAAA)n Simple_repeat Simple_repeat 3 92 0 459 339 33 25 chr21 7219235 7219601 -27687969 + MER20B DNA MER1_type 93 461 -323 1519 173 35 28 chr21 7219760 7220049 -27687521 - AluJb SINE Alu -21 291 1 453 309 89 78 chr21 7220208 7220789 -27686781 + L1ME4a LINE L1 5452 6038 -83 30 27 0 0 chr21 7222545 7222582 -27684988 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr21 7223216 7223262 -27684308 + AT_rich Low_complexity Low_complexity 1 46 0 328 292 28 28 chr21 7223411 7223555 -27684015 - L1MD1 LINE L1 -285 5957 5814 202 186 0 51 chr21 7224466 7224525 -27683045 + CT-rich Low_complexity Low_complexity 1 56 0 832 242 61 34 chr21 7224600 7224897 -27682673 - MER2 DNA MER2_type 0 344 40 927 195 43 17 chr21 7226357 7226588 -27680982 + L1MB3 LINE L1 5945 6181 -2 2046 105 0 4 chr21 7226668 7226944 -27680626 + AluSg SINE Alu 1 275 -35 270 0 0 0 chr21 7226944 7226974 -27680596 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1571 162 99 24 chr21 7228290 7228623 -27678947 + THE1B LTR MaLR 1 358 -6 670 131 10 0 chr21 7229074 7229173 -27678397 + MSTA LTR MaLR 1 100 -328 1069 62 8 0 chr21 7229174 7229304 -27678266 + AluY SINE Alu 130 260 -51 18987 168 26 18 chr21 7229305 7232734 -27674836 - L1M1 LINE L1 -4098 3467 10 777 229 64 117 chr21 7232773 7233148 -27674422 - MER57A LTR ERV1 -3 400 46 235 230 69 0 chr21 7234041 7234128 -27673442 + (TA)n Simple_repeat Simple_repeat 2 94 0 2181 216 51 2 chr21 7235784 7236233 -27671337 - LTR42 LTR ERVL -24 471 1 289 296 19 82 chr21 7236403 7236562 -27671008 + MIR SINE MIR 88 236 -26 4713 164 39 24 chr21 7236617 7237527 -27670043 + MER49 LTR ERV1 1 923 0 472 286 66 19 chr21 7237839 7238052 -27669518 + MIR SINE MIR 40 262 0 1649 162 133 3 chr21 7239093 7239438 -27668132 - MLT1B LTR MaLR 0 390 1 935 226 51 72 chr21 7239492 7239824 -27667746 - MLT1D LTR MaLR -180 325 1 771 193 70 102 chr21 7242441 7242726 -27664844 + L1MB8 LINE L1 5902 6177 -1 466 296 15 7 chr21 7244359 7244494 -27663076 + LTR16B LTR ERVL 185 320 -144 474 178 0 0 chr21 7245039 7245129 -27662441 + CT-rich Low_complexity Low_complexity 4 93 0 180 0 0 0 chr21 7245580 7245600 -27661970 + (TG)n Simple_repeat Simple_repeat 2 21 0 2400 58 0 0 chr21 7245644 7245939 -27661631 + AluY SINE Alu 1 295 -16 222 191 0 0 chr21 7247146 7247193 -27660377 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr21 7248689 7248711 -27658859 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr21 7249099 7249135 -27658435 + AT_rich Low_complexity Low_complexity 1 36 0 53 30 0 0 chr21 7249194 7249261 -27658309 + AT_rich Low_complexity Low_complexity 1 67 0 631 299 16 0 chr21 7249952 7250136 -27657434 - MER5A DNA MER1_type -1 188 2 209 210 16 0 chr21 7250717 7250779 -27656791 + (TA)n Simple_repeat Simple_repeat 1 63 0 2129 93 7 3 chr21 7250813 7251103 -27656467 + AluSc SINE Alu 1 291 -18 21 0 0 0 chr21 7254608 7254629 -27652941 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 7255502 7255535 -27652035 + AT_rich Low_complexity Low_complexity 1 33 0 205 73 24 49 chr21 7255650 7255691 -27651879 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 25 0 0 0 chr21 7256421 7256446 -27651124 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr21 7256544 7256570 -27651000 + AT_rich Low_complexity Low_complexity 1 26 0 203 133 0 0 chr21 7256710 7256740 -27650830 + (TG)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr21 7258027 7258098 -27649472 + AT_rich Low_complexity Low_complexity 1 71 0 2074 231 32 10 chr21 7259782 7259870 -27647700 - MLT1D LTR MaLR 0 505 420 3413 140 4 4 chr21 7259870 7260397 -27647173 + MER1A DNA MER1_type 1 527 0 2074 231 32 10 chr21 7260397 7260802 -27646768 - MLT1D LTR MaLR -85 420 1 312 27 0 0 chr21 7262583 7262620 -27644950 + (CA)n Simple_repeat Simple_repeat 1 37 0 31 0 0 0 chr21 7262790 7262821 -27644749 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr21 7263079 7263115 -27644455 + AT_rich Low_complexity Low_complexity 1 36 0 393 22 0 0 chr21 7264041 7264087 -27643483 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr21 7264915 7264938 -27642632 + AT_rich Low_complexity Low_complexity 1 23 0 880 95 6 7 chr21 7265026 7265176 -27642394 - L1PA8A LINE L1 -406 5725 5590 237 234 128 21 chr21 7265341 7265435 -27642135 - MIR SINE MIR -93 169 66 3546 160 18 37 chr21 7265444 7266168 -27641402 + MER50 LTR ERV1 1 710 -24 23 54 0 0 chr21 7266340 7266377 -27641193 + AT_rich Low_complexity Low_complexity 1 37 0 1020 157 124 23 chr21 7266724 7266941 -27640629 - AluJo SINE Alu -59 253 15 1603 216 20 14 chr21 7267595 7268222 -27639348 - L1MB8 LINE L1 0 6178 5459 2161 188 44 69 chr21 7268222 7268790 -27638780 + MLT2B3 LTR ERVL 1 554 0 1603 216 20 14 chr21 7268790 7269165 -27638405 - L1MB8 LINE L1 -719 5459 5088 361 154 0 0 chr21 7269168 7269246 -27638324 - L1MB8 LINE L1 -1090 5056 4979 22 0 0 0 chr21 7269294 7269316 -27638254 + AT_rich Low_complexity Low_complexity 1 22 0 973 293 44 15 chr21 7269756 7270097 -27637473 - L1M4b LINE L1 -5913 946 596 1005 217 56 97 chr21 7270126 7270499 -27637071 + MLT1A2 LTR MaLR 12 369 -5 906 285 72 55 chr21 7270534 7271022 -27636548 - L1M4b LINE L1 -6353 506 11 503 306 77 55 chr21 7272763 7273090 -27634480 - MLT1H LTR MaLR -204 345 12 188 162 12 62 chr21 7273528 7273608 -27633962 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 28 29 0 0 chr21 7273905 7273940 -27633630 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 7274001 7274030 -27633540 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr21 7274120 7274143 -27633427 + (TA)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr21 7274155 7274183 -27633387 + AT_rich Low_complexity Low_complexity 1 28 0 45 83 0 0 chr21 7275190 7275298 -27632272 + AT_rich Low_complexity Low_complexity 1 108 0 4376 142 61 18 chr21 7275298 7276133 -27631437 - L1MA5 LINE L1 -15 6285 5415 3428 187 24 30 chr21 7276133 7276934 -27630636 + L1MA5 LINE L1 4608 5403 -743 269 378 61 5 chr21 7277133 7277329 -27630241 + MIR SINE MIR 49 255 -7 186 43 0 0 chr21 7279088 7279111 -27628459 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr21 7279342 7279363 -27628207 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 7280717 7280745 -27626825 + AT_rich Low_complexity Low_complexity 1 28 0 743 163 0 31 chr21 7281628 7281757 -27625813 - AluJb SINE Alu -187 125 1 226 278 0 42 chr21 7282245 7282317 -27625253 + G-rich Low_complexity Low_complexity 5 73 0 458 200 113 0 chr21 7282829 7282900 -27624670 + L1MA9 LINE L1 6079 6141 -171 360 0 0 0 chr21 7282900 7282940 -27624630 + (CA)n Simple_repeat Simple_repeat 1 40 0 458 200 113 0 chr21 7282940 7282983 -27624587 + L1MA9 LINE L1 6141 6206 -106 1967 186 36 31 chr21 7282986 7283534 -27624036 - MLT2A2 LTR ERVL 0 554 1 2242 83 0 0 chr21 7284746 7285034 -27622536 - AluSg SINE Alu -22 288 1 1670 76 0 9 chr21 7285709 7285933 -27621637 + AluY SINE Alu 76 297 -14 254 109 47 47 chr21 7286936 7287000 -27620570 + T-rich Low_complexity Low_complexity 2 65 0 35 54 0 0 chr21 7287901 7287957 -27619613 + AT_rich Low_complexity Low_complexity 1 56 0 2321 82 0 3 chr21 7288303 7288607 -27618963 + AluY SINE Alu 1 303 -8 1100 204 19 23 chr21 7290115 7290379 -27617191 + L1MA8 LINE L1 5982 6244 -47 5227 195 15 42 chr21 7290397 7291923 -27615647 + L1PA11 LINE L1 1176 2676 -3785 8005 157 37 18 chr21 7291923 7294152 -27613418 + L1PA11 LINE L1 4192 6486 -3 359 292 84 32 chr21 7294467 7294621 -27612949 + MLT1J LTR MaLR 1 162 -349 189 308 77 15 chr21 7294905 7295035 -27612535 - L2 LINE L2 -1265 2049 1912 1707 144 40 7 chr21 7295426 7295704 -27611866 + AluJo SINE Alu 1 287 -25 29 47 0 0 chr21 7295867 7295910 -27611660 + AT_rich Low_complexity Low_complexity 1 43 0 237 344 0 42 chr21 7298575 7298671 -27608899 + MLT1J1 LTR MaLR 28 119 -327 2209 112 3 0 chr21 7299039 7299333 -27608237 + AluSc SINE Alu 1 295 -14 21 0 0 0 chr21 7299446 7299467 -27608103 + AT_rich Low_complexity Low_complexity 1 21 0 1079 226 104 27 chr21 7299733 7300136 -27607434 + MER104 DNA MER2_type 1288 1892 -3 21 0 0 0 chr21 7300172 7300193 -27607377 + AT_rich Low_complexity Low_complexity 1 21 0 515 310 102 7 chr21 7300829 7301145 -27606425 + MLT1J2 LTR MaLR 1 344 -106 242 266 0 0 chr21 7301340 7301408 -27606162 + L1MC/D LINE L1 5304 5364 -782 543 271 21 7 chr21 7301410 7301554 -27606016 + MLT1A1 LTR MaLR 3 148 -217 463 230 111 0 chr21 7301558 7301684 -27605886 + L1MC/D LINE L1 5493 5632 -727 1386 156 0 9 chr21 7301728 7301959 -27605611 - MER4A LTR ERV1 0 664 436 304 71 24 0 chr21 7302051 7302093 -27605477 - MER4A LTR ERV1 -361 303 261 699 101 0 10 chr21 7302093 7302192 -27605378 - MER4A LTR ERV1 -566 98 1 801 256 9 13 chr21 7302196 7302427 -27605143 + LTR8 LTR ERV1 55 261 -435 1280 204 103 25 chr21 7302520 7302888 -27604682 + LTR8A LTR ERV1 287 683 -44 5939 214 47 47 chr21 7302888 7304302 -27603268 - MER65C-int LTR ERV1 -722 3469 2055 713 269 90 16 chr21 7304536 7304792 -27602778 - MER101B LTR ERV1 -272 298 24 2057 223 3 10 chr21 7304829 7305215 -27602355 - MER65C-int LTR ERV1 -2148 2043 1661 1319 200 39 101 chr21 7305289 7305933 -27601637 + LTR28 LTR ERV1 69 732 -94 1985 187 61 25 chr21 7306244 7306640 -27600930 - MER65C-int LTR ERV1 -2527 1664 1255 2613 38 0 6 chr21 7306641 7306954 -27600616 + AluY SINE Alu 1 311 0 1154 44 0 20 chr21 7307152 7307449 -27600121 - L1PA7 LINE L1 -3 6151 5814 2861 243 21 27 chr21 7307449 7308162 -27599408 - MER65C-int LTR ERV1 -2531 4227 3519 2372 216 31 4 chr21 7308688 7309175 -27598395 - MER65C-int LTR ERV1 -3691 500 1 197 119 24 0 chr21 7310135 7310177 -27597393 + A-rich Low_complexity Low_complexity 1 43 0 208 141 14 42 chr21 7310210 7310281 -27597289 + (TTAAA)n Simple_repeat Simple_repeat 1 69 0 33 73 0 0 chr21 7310290 7310358 -27597212 + AT_rich Low_complexity Low_complexity 1 68 0 258 328 37 62 chr21 7310710 7310799 -27596771 + L2 LINE L2 2935 3025 -288 2023 114 3 10 chr21 7310799 7311107 -27596463 - AluSx SINE Alu -6 306 1 258 328 37 62 chr21 7311107 7311340 -27596230 + L2 LINE L2 3025 3249 -64 1641 176 3 7 chr21 7311416 7311712 -27595858 - MER65C LTR ERV1 -1 460 166 32 0 0 0 chr21 7311777 7311809 -27595761 + AT_rich Low_complexity Low_complexity 1 32 0 264 321 37 45 chr21 7311991 7312125 -27595445 + MIR SINE MIR 45 177 -85 1535 213 6 13 chr21 7312348 7312662 -27594908 + AluJb SINE Alu 1 312 0 308 186 0 14 chr21 7312665 7312735 -27594835 + GA-rich Low_complexity Low_complexity 3 71 0 1498 120 5 5 chr21 7312782 7313036 -27594534 - AluSq SINE Alu 0 319 66 2180 200 50 2 chr21 7313268 7313708 -27593862 - LOR1b LTR ERV1 0 461 1 24 67 0 0 chr21 7314315 7314360 -27593210 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 7314423 7314469 -27593101 + AT_rich Low_complexity Low_complexity 1 46 0 279 330 10 0 chr21 7314509 7314606 -27592964 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 24 0 0 0 chr21 7315032 7315056 -27592514 + AT_rich Low_complexity Low_complexity 1 24 0 1876 205 70 0 chr21 7315645 7316015 -27591555 + MSTD LTR MaLR 1 396 0 749 280 10 0 chr21 7316369 7316576 -27590994 - MER6B DNA MER2_type -1 209 1 833 194 0 7 chr21 7316877 7317032 -27590538 + MLT1A1 LTR MaLR 1 154 -211 407 209 43 61 chr21 7317035 7317150 -27590420 + FLAM_C SINE Alu 4 116 -17 210 118 0 0 chr21 7317152 7317186 -27590384 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 614 274 19 13 chr21 7317187 7317344 -27590226 + MLT1A1 LTR MaLR 149 306 -59 210 143 0 0 chr21 7317481 7317516 -27590054 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 24 53 0 0 chr21 7317751 7317789 -27589781 + AT_rich Low_complexity Low_complexity 1 38 0 28 48 0 0 chr21 7319571 7319613 -27587957 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr21 7320919 7320945 -27586625 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 21 0 0 0 chr21 7321534 7321555 -27586015 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 7321839 7321862 -27585708 + AT_rich Low_complexity Low_complexity 1 23 0 488 220 20 0 chr21 7321863 7321963 -27585607 - FLAM_A SINE Alu -21 121 20 1796 258 29 35 chr21 7322208 7322692 -27584878 + MLT1E3 LTR MaLR 144 624 0 1137 153 18 9 chr21 7323366 7323595 -27583975 - L1PA13 LINE L1 0 6163 5933 22 0 0 0 chr21 7324113 7324135 -27583435 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr21 7324654 7324699 -27582871 + (CA)n Simple_repeat Simple_repeat 2 46 0 7834 180 53 17 chr21 7324714 7326740 -27580830 + L1MC1 LINE L1 22 2204 -4222 883 287 80 0 chr21 7326767 7327091 -27580479 + L1MC1 LINE L1 4739 5088 -1338 5249 13 0 0 chr21 7327091 7327689 -27579881 + L1HS LINE L1 5556 6153 -2 186 71 0 0 chr21 7327690 7327718 -27579852 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 5125 195 43 17 chr21 7327721 7329212 -27578358 + L1MC1 LINE L1 5087 6612 -1 687 242 59 59 chr21 7329256 7329475 -27578095 + MER20 DNA MER1_type 1 219 0 186 43 0 0 chr21 7330505 7330528 -27577042 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 619 180 62 45 chr21 7331125 7331139 -27576431 + MER53 DNA DNA 9 21 -168 2052 129 20 3 chr21 7331139 7331442 -27576128 + AluSx SINE Alu 1 308 -4 619 180 62 45 chr21 7331442 7331605 -27575965 + MER53 DNA DNA 21 189 0 36 23 0 0 chr21 7334275 7334318 -27573252 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr21 7335278 7335323 -27572247 + AT_rich Low_complexity Low_complexity 1 45 0 252 91 0 0 chr21 7335658 7335691 -27571879 - MLT1I LTR MaLR -269 140 108 182 319 77 11 chr21 7337688 7337779 -27569791 - L2 LINE L2 0 3313 3217 185 250 39 19 chr21 7338442 7338494 -27569076 + MER5A DNA MER1_type 128 180 -9 771 282 11 11 chr21 7338559 7338736 -27568834 + MER5A DNA MER1_type 13 189 0 1694 228 33 31 chr21 7339074 7339530 -27568040 + MSTB2 LTR MaLR 1 457 0 1208 81 6 0 chr21 7339686 7339860 -27567710 + (TCTCC)n Simple_repeat Simple_repeat 4 178 0 354 45 0 0 chr21 7339861 7339905 -27567665 + (TCCCC)n Simple_repeat Simple_repeat 4 47 0 189 0 0 0 chr21 7339905 7339926 -27567644 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2334 18 4 4 chr21 7339928 7340207 -27567363 - AluY SINE Alu -32 279 1 318 26 0 0 chr21 7340990 7341029 -27566541 + (TG)n Simple_repeat Simple_repeat 2 40 0 437 91 0 13 chr21 7341523 7341600 -27565970 + (TAAAA)n Simple_repeat Simple_repeat 2 77 0 696 189 30 80 chr21 7341939 7342140 -27565430 - L1MC/D LINE L1 -2042 5743 5553 1137 223 29 7 chr21 7342139 7342417 -27565153 + L1MC3 LINE L1 6197 6480 -1305 3067 214 45 45 chr21 7342420 7343224 -27564346 + L1MC3 LINE L1 6558 7361 -424 2252 97 0 3 chr21 7343237 7343537 -27564033 + AluSp SINE Alu 1 299 -14 22 0 0 0 chr21 7344127 7344149 -27563421 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr21 7344345 7344386 -27563184 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr21 7344413 7344464 -27563106 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr21 7344582 7344617 -27562953 + AT_rich Low_complexity Low_complexity 1 35 0 223 279 16 16 chr21 7344995 7345056 -27562514 + L2 LINE L2 3211 3271 -1 212 244 0 0 chr21 7347344 7347385 -27560185 + polypyrimidine Low_complexity Low_complexity 2 42 0 309 381 86 30 chr21 7347574 7347876 -27559694 + L2 LINE L2 2492 2810 -504 24 32 0 0 chr21 7348946 7348977 -27558593 + AT_rich Low_complexity Low_complexity 1 31 0 227 137 0 20 chr21 7349569 7349620 -27557950 + L1MCa LINE L1 2005 2054 -4372 254 356 91 58 chr21 7350774 7351103 -27556467 + L2 LINE L2 2924 3263 -9 193 411 50 7 chr21 7351190 7351331 -27556239 - L2 LINE L2 -427 2887 2741 1804 137 11 0 chr21 7351843 7352120 -27555450 + AluSq SINE Alu 17 296 -17 207 182 45 30 chr21 7352147 7352213 -27555357 + A-rich Low_complexity Low_complexity 2 68 0 273 240 141 25 chr21 7353095 7353216 -27554354 - L3 LINE CR1 -542 1035 901 456 233 75 44 chr21 7353790 7353860 -27553710 + MIR SINE MIR 99 165 -97 2019 134 0 16 chr21 7353860 7354167 -27553403 - AluSc SINE Alu -7 302 1 456 233 75 44 chr21 7354167 7354255 -27553315 + MIR SINE MIR 165 262 0 21 0 0 0 chr21 7354255 7354276 -27553294 + AT_rich Low_complexity Low_complexity 1 21 0 2041 121 13 7 chr21 7354969 7355275 -27552295 - AluSg SINE Alu 0 310 3 2524 68 0 0 chr21 7355617 7355928 -27551642 - AluY SINE Alu 0 311 1 443 307 45 11 chr21 7356252 7356431 -27551139 + LTR16A1 LTR ERVL 55 239 -218 21 95 0 0 chr21 7356895 7356958 -27550612 + AT_rich Low_complexity Low_complexity 1 63 0 2986 82 13 22 chr21 7357231 7357682 -27549888 - L1PA13 LINE L1 -5 6158 5712 23 33 0 0 chr21 7357922 7357952 -27549618 + AT_rich Low_complexity Low_complexity 1 30 0 1875 148 3 14 chr21 7357961 7358252 -27549318 - AluSg SINE Alu -20 290 3 272 249 41 95 chr21 7358490 7358659 -27548911 + HAL1 LINE L1 90 249 -2258 6179 131 3 4 chr21 7358654 7359588 -27547982 - THE1B-int LTR MaLR -647 933 1 1753 128 119 33 chr21 7359588 7359923 -27547647 - THE1B LTR MaLR 0 364 1 792 275 75 81 chr21 7361477 7361997 -27545573 - MLT1H LTR MaLR -8 541 25 399 41 0 0 chr21 7362291 7362340 -27545230 + (CA)n Simple_repeat Simple_repeat 2 50 0 219 342 25 0 chr21 7362784 7362863 -27544707 - L2 LINE L2 -797 2517 2437 1832 108 4 0 chr21 7363142 7363391 -27544179 - AluSg SINE Alu -19 291 42 1852 152 52 38 chr21 7365915 7366283 -27541287 - THE1C LTR MaLR -2 373 1 265 303 156 0 chr21 7366289 7366398 -27541172 - L2 LINE L2 0 3313 3188 1948 281 57 29 chr21 7366481 7367233 -27540337 - L2 LINE L2 -243 3070 2299 194 277 32 64 chr21 7367564 7367658 -27539912 - L2 LINE L2 0 3272 3182 1445 203 37 26 chr21 7368036 7368385 -27539185 + MLT1A2 LTR MaLR 1 353 -21 656 167 14 22 chr21 7368404 7368542 -27539028 + MLT1A2-int LTR MaLR 2 138 -1597 1014 243 40 40 chr21 7368549 7368853 -27538717 - MER67B LTR ERV1 -357 304 1 231 206 63 0 chr21 7368883 7368946 -27538624 - L1 LINE L1 -1599 4547 4481 347 277 36 24 chr21 7369474 7369640 -27537930 - L1 LINE L1 -2237 3909 3742 477 95 0 12 chr21 7369643 7369727 -27537843 - Alu SINE Alu -2 309 227 564 246 16 8 chr21 7369794 7369920 -27537650 + MLT2B1 LTR ERVL 345 471 -49 210 200 20 0 chr21 7369957 7370007 -27537563 + (TA)n Simple_repeat Simple_repeat 2 52 0 203 122 54 40 chr21 7370190 7370264 -27537306 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 948 203 14 14 chr21 7370355 7370567 -27537003 - L1MA9 LINE L1 -42 6270 6059 2773 208 47 25 chr21 7370569 7371551 -27536019 - L1MA9 LINE L1 -620 5692 4698 584 184 0 0 chr21 7371669 7371767 -27535803 + LTR52-int LTR ERVL 1999 2096 -3589 401 154 96 48 chr21 7371923 7372027 -27535543 + LTR52-int LTR ERVL 1088 1196 -2360 247 171 24 0 chr21 7372654 7372695 -27534875 + 5S rRNA rRNA 1 42 -79 213 132 0 0 chr21 7373251 7373289 -27534281 + (CA)n Simple_repeat Simple_repeat 2 39 0 9703 163 21 30 chr21 7373810 7375278 -27532292 + Tigger1 DNA MER2_type 1 1453 -965 2522 104 13 11 chr21 7375278 7375654 -27531916 - L1PA13 LINE L1 -4 6159 5783 9703 163 21 30 chr21 7375654 7375948 -27531622 + Tigger1 DNA MER2_type 1453 1748 -670 1397 177 44 4 chr21 7375952 7376200 -27531370 + AluSx SINE Alu 6 263 -49 693 167 16 8 chr21 7378323 7378449 -27529121 + FLAM_C SINE Alu 1 127 -16 710 160 0 16 chr21 7379821 7379946 -27527624 - FLAM_C SINE Alu -20 123 1 33 25 0 0 chr21 7380041 7380081 -27527489 + AT_rich Low_complexity Low_complexity 1 40 0 2143 125 10 13 chr21 7380284 7380638 -27526932 - AluSx SINE Alu 0 355 3 929 248 60 10 chr21 7381012 7381465 -27526105 + MER34 LTR ERV1 14 517 -25 1955 172 77 0 chr21 7381521 7381887 -27525683 + MER57A LTR ERV1 8 401 -2 22 35 0 0 chr21 7382407 7382436 -27525134 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 7382674 7382695 -27524875 + AT_rich Low_complexity Low_complexity 1 21 0 2030 259 53 51 chr21 7382880 7383116 -27524454 + LTR27 LTR ERV1 7 1750 -5 1486 253 63 56 chr21 7383133 7383918 -27523652 + LTR28 LTR ERV1 264 1750 -5 709 175 51 45 chr21 7384625 7384802 -27522768 - L1MD1 LINE L1 0 6242 6065 444 266 87 39 chr21 7384834 7385063 -27522507 - L1M4 LINE L1 -3028 3118 2879 1356 272 20 20 chr21 7385063 7385456 -27522114 - L1MDa LINE L1 -6030 510 118 41 58 0 0 chr21 7385463 7385532 -27522038 + AT_rich Low_complexity Low_complexity 1 69 0 24 67 0 0 chr21 7385933 7385978 -27521592 + AT_rich Low_complexity Low_complexity 1 45 0 279 71 0 0 chr21 7387232 7387274 -27520296 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3215 138 25 27 chr21 7387451 7388234 -27519336 + L1P5 LINE L1 4992 5775 -376 23 33 0 0 chr21 7388575 7388605 -27518965 + AT_rich Low_complexity Low_complexity 1 30 0 581 265 80 99 chr21 7388703 7389126 -27518444 - MLT1H LTR MaLR -3 546 132 1798 198 50 22 chr21 7389394 7389758 -27517812 + MSTA LTR MaLR 51 424 -4 2128 154 25 0 chr21 7389763 7390127 -27517443 + MSTA-int LTR MaLR 2 374 -1277 28605 27 1 0 chr21 7390126 7394344 -27513226 - L1PA2 LINE L1 0 6155 1934 6380 214 8 18 chr21 7394309 7395078 -27512492 + MSTA-int LTR MaLR 347 1121 -530 1731 162 32 51 chr21 7395078 7395449 -27512121 + THE1B LTR MaLR 1 364 0 11058 115 8 0 chr21 7395449 7397016 -27510554 + THE1B-int LTR MaLR 1 1580 0 1689 132 21 103 chr21 7397016 7397403 -27510167 + THE1A LTR MaLR 1 355 0 6380 214 8 18 chr21 7397403 7397609 -27509961 + MSTA-int LTR MaLR 1119 1325 -326 4261 141 16 12 chr21 7397609 7398297 -27509273 + LTR8 LTR ERV1 1 691 0 6380 214 8 18 chr21 7398297 7398635 -27508935 + MSTA-int LTR MaLR 1325 1651 0 405 242 0 10 chr21 7398637 7398736 -27508834 + MSTA LTR MaLR 3 100 -326 2426 147 24 24 chr21 7398736 7399152 -27508418 - MSTA LTR MaLR 0 428 13 985 83 0 0 chr21 7399206 7399339 -27508231 + L1MA1 LINE L1 6170 6302 0 1434 182 18 25 chr21 7399371 7399645 -27507925 + MSTA LTR MaLR 157 428 0 2149 106 0 3 chr21 7400307 7400613 -27506957 - AluSg SINE Alu 0 305 1 1704 151 89 31 chr21 7401146 7401471 -27506099 - THE1B LTR MaLR 0 364 21 965 339 54 14 chr21 7401471 7401899 -27505671 + L2 LINE L2 2371 2815 -499 491 330 24 29 chr21 7402061 7402267 -27505303 + L2 LINE L2 2873 3077 -236 519 114 0 0 chr21 7402577 7402656 -27504914 + AluSg/x SINE Alu 215 293 -16 1747 214 41 31 chr21 7402658 7403045 -27504525 - MSTB LTR MaLR -35 391 1 357 198 37 12 chr21 7403121 7403202 -27504368 + MLT1D LTR MaLR 48 130 -375 1137 189 8 29 chr21 7403203 7403408 -27504162 + MLT1D-int LTR MaLR 371 572 -799 1619 180 54 10 chr21 7403408 7403703 -27503867 - AluSx SINE Alu -4 308 1 1137 189 8 29 chr21 7403703 7403735 -27503835 + MLT1D-int LTR MaLR 572 603 -768 866 288 4 9 chr21 7403867 7404093 -27503477 + MLT1D-int LTR MaLR 659 883 -488 1084 287 59 51 chr21 7404177 7404668 -27502902 + MLT1D-int LTR MaLR 877 1371 0 1561 257 62 24 chr21 7404668 7405135 -27502435 + MLT1D LTR MaLR 1 485 -20 400 276 155 6 chr21 7405158 7405339 -27502231 + LTR33A LTR ERVL 287 494 -29 1173 195 5 0 chr21 7407293 7407493 -27500077 - MER47B DNA MER2_type -1 417 217 1793 184 37 6 chr21 7407854 7408208 -27499362 + MLT2C1 LTR ERVL 1 480 -40 3693 233 34 16 chr21 7408270 7408927 -27498643 + MLT1D-int LTR MaLR 1 680 -691 2269 205 29 0 chr21 7408927 7409371 -27498199 + MSTB2 LTR MaLR 1 457 0 3693 233 34 16 chr21 7409371 7409594 -27497976 + MLT1D-int LTR MaLR 680 897 -474 309 148 16 0 chr21 7409650 7409711 -27497859 + MLT1D-int LTR MaLR 1293 1354 -17 1168 235 56 3 chr21 7409755 7410161 -27497409 + MLT1C LTR MaLR 16 465 -2 21 0 0 0 chr21 7410345 7410366 -27497204 + AT_rich Low_complexity Low_complexity 1 21 0 401 290 80 22 chr21 7411525 7411663 -27495907 - L2 LINE L2 -689 2625 2480 644 299 74 56 chr21 7411702 7411860 -27495710 - L2 LINE L2 -904 2410 2256 2176 125 0 0 chr21 7411860 7412157 -27495413 - AluSx SINE Alu -13 299 3 644 299 74 56 chr21 7412157 7412225 -27495345 - L2 LINE L2 -1058 2256 2191 656 216 210 0 chr21 7412225 7412406 -27495164 - MER20 DNA MER1_type 0 219 1 644 299 74 56 chr21 7412406 7412482 -27495088 - L2 LINE L2 -1123 2191 2098 2051 129 6 10 chr21 7412482 7412793 -27494777 + AluSx SINE Alu 1 310 -2 644 299 74 56 chr21 7412793 7412826 -27494744 - L2 LINE L2 -1216 2098 2067 453 342 28 20 chr21 7412811 7413065 -27494505 - L2 LINE L2 -1201 2113 1858 1207 216 57 90 chr21 7413686 7414108 -27493462 + LTR52 LTR ERVL 12 419 -2 309 151 0 0 chr21 7414181 7414234 -27493336 + GA-rich Low_complexity Low_complexity 3 55 0 1940 133 123 0 chr21 7415073 7415397 -27492173 + THE1B LTR MaLR 1 364 0 2001 141 3 0 chr21 7415422 7415719 -27491851 + AluSx SINE Alu 1 298 -14 199 400 67 0 chr21 7416195 7416390 -27491180 - L2 LINE L2 -2861 453 246 24 32 0 0 chr21 7416965 7416996 -27490574 + AT_rich Low_complexity Low_complexity 1 31 0 1695 238 30 8 chr21 7417032 7417432 -27490138 - MLT2D LTR ERVL 0 414 6 23 0 0 0 chr21 7418309 7418332 -27489238 + AT_rich Low_complexity Low_complexity 1 23 0 1959 114 0 7 chr21 7418996 7419276 -27488294 - AluSg SINE Alu -2 308 31 21 36 0 0 chr21 7419975 7420003 -27487567 + AT_rich Low_complexity Low_complexity 1 28 0 1220 160 52 3 chr21 7421319 7421628 -27485942 + MSTA LTR MaLR 1 428 0 3535 194 35 50 chr21 7421730 7422699 -27484871 + LTR5 LTR ERVK 1 955 -14 1033 148 144 4 chr21 7422806 7423056 -27484514 - L1MA7 LINE L1 0 6291 6007 998 138 36 67 chr21 7423199 7423424 -27484146 - L1MA7 LINE L1 -280 6011 5794 658 219 19 32 chr21 7423424 7423579 -27483991 + MSTD LTR MaLR 1 153 -243 342 282 8 17 chr21 7423682 7423799 -27483771 + MSTD LTR MaLR 250 365 0 1696 198 38 0 chr21 7423799 7424138 -27483432 - L1M2 LINE L1 -493 5798 5447 30 27 0 0 chr21 7424571 7424608 -27482962 + AT_rich Low_complexity Low_complexity 1 37 0 4126 33 0 0 chr21 7424782 7425352 -27482218 - L1PA5 LINE L1 -691 5463 4894 5552 43 32 0 chr21 7425352 7426031 -27481539 + L1PA5 LINE L1 5450 6152 -2 23 33 0 0 chr21 7426032 7426062 -27481508 + AT_rich Low_complexity Low_complexity 1 30 0 39 22 0 0 chr21 7426521 7426567 -27481003 + AT_rich Low_complexity Low_complexity 1 46 0 515 326 28 14 chr21 7426885 7427103 -27480467 + LTR16A LTR ERVL 34 254 -196 516 351 34 8 chr21 7427500 7427768 -27479802 + HERV16 LTR ERVL 261 535 -4461 467 16 0 16 chr21 7428056 7428117 -27479453 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 309 266 135 76 chr21 7429229 7429466 -27478104 + HERV16 LTR ERVL 2192 2442 -2554 589 266 83 31 chr21 7429725 7429917 -27477653 + MER20 DNA MER1_type 18 219 0 1982 143 10 0 chr21 7429933 7430226 -27477344 - AluSx SINE Alu -16 296 1 702 307 42 0 chr21 7430299 7430511 -27477059 + LTR16A LTR ERVL 230 450 0 26 64 0 0 chr21 7430601 7430648 -27476922 + AT_rich Low_complexity Low_complexity 1 47 0 31 88 0 0 chr21 7431325 7431405 -27476165 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr21 7431513 7431534 -27476036 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 7433165 7433203 -27474367 + AT_rich Low_complexity Low_complexity 1 38 0 2010 196 65 9 chr21 7433777 7434182 -27473388 - L1MB3 LINE L1 -2 6181 5746 213 39 0 0 chr21 7434182 7434208 -27473362 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2010 196 65 9 chr21 7434208 7434261 -27473309 - L1MB3 LINE L1 -437 5746 5697 2737 207 36 28 chr21 7434263 7435235 -27472335 - L1MB3 LINE L1 -525 5658 4673 3041 222 52 35 chr21 7435247 7436214 -27471356 - L1MB3 LINE L1 -1516 4630 3648 436 237 3 0 chr21 7436260 7436370 -27471200 - L1MCa LINE L1 -3950 2614 2517 2675 262 53 32 chr21 7436364 7436486 -27471084 - L1MCa LINE L1 -4948 1097 979 1812 157 29 32 chr21 7436486 7436862 -27470708 - THE1C LTR MaLR 0 375 1 2675 262 53 32 chr21 7436862 7437580 -27469990 - L1MCa LINE L1 -5066 979 236 3638 122 71 2 chr21 7437580 7438170 -27469400 + MER41B LTR ERV1 1 631 -4 2675 262 53 32 chr21 7438170 7438201 -27469369 - L1MCa LINE L1 -5809 236 207 2657 176 35 76 chr21 7438289 7439010 -27468560 - LTR8 LTR ERV1 0 691 1 438 228 83 67 chr21 7439443 7439623 -27467947 - L1MCa LINE L1 -5855 190 8 2716 3 3 0 chr21 7439636 7439935 -27467635 + AluYa5 SINE Alu 1 300 -11 25 31 0 0 chr21 7440437 7440469 -27467101 + AT_rich Low_complexity Low_complexity 1 32 0 1178 148 35 0 chr21 7441747 7441950 -27465620 - Tigger7 DNA MER2_type 0 2487 2278 2272 190 9 46 chr21 7441953 7442406 -27465164 - Tigger7 DNA MER2_type -2048 439 4 23 54 0 0 chr21 7442494 7442531 -27465039 + AT_rich Low_complexity Low_complexity 1 37 0 1323 277 56 45 chr21 7442862 7443648 -27463922 - HAL1b LINE L1 -429 919 125 260 276 49 32 chr21 7444897 7444990 -27462580 + MLT1J2 LTR MaLR 51 145 -305 1346 215 94 30 chr21 7444990 7445353 -27462217 - MLT1B LTR MaLR 0 390 5 225 94 0 0 chr21 7445435 7445467 -27462103 + (CA)n Simple_repeat Simple_repeat 1 32 0 403 314 51 6 chr21 7445698 7445711 -27461859 + L1ME3 LINE L1 5678 5689 -481 2122 102 24 0 chr21 7445711 7446005 -27461565 + AluSg SINE Alu 1 301 -9 403 314 51 6 chr21 7446005 7446250 -27461320 + L1ME3 LINE L1 5689 5948 -222 25 83 0 0 chr21 7446469 7446529 -27461041 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr21 7446610 7446631 -27460939 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 0 10 chr21 7446688 7446993 -27460577 + AluY SINE Alu 1 302 -9 248 275 110 0 chr21 7448251 7448342 -27459228 + MIR SINE MIR 118 218 -44 891 250 107 29 chr21 7448503 7448811 -27458759 + LTR28 LTR ERV1 1 332 -688 679 231 8 27 chr21 7448816 7448991 -27458579 + MER52A LTR ERV1 334 1232 -10 1648 177 31 26 chr21 7450176 7450526 -27457044 - L1MA4 LINE L1 -14 6286 5935 428 164 0 0 chr21 7450531 7450604 -27456966 + L1MA4 LINE L1 5868 5940 -363 399 339 28 27 chr21 7450746 7450993 -27456577 - L1ME3A LINE L1 -163 6003 5761 21 36 0 0 chr21 7451252 7451280 -27456290 + AT_rich Low_complexity Low_complexity 1 28 0 363 325 114 0 chr21 7452212 7452335 -27455235 + MLT1E LTR MaLR 3 139 -454 1373 219 70 110 chr21 7452326 7452870 -27454700 + MLT1E LTR MaLR 103 593 0 2615 33 3 0 chr21 7454337 7454644 -27452926 - AluY SINE Alu -3 308 1 466 234 0 0 chr21 7455077 7455171 -27452399 - AluJo SINE Alu -9 303 210 22 0 0 0 chr21 7455171 7455193 -27452377 + AT_rich Low_complexity Low_complexity 1 22 0 644 221 7 7 chr21 7455193 7455338 -27452232 - AluJo SINE Alu -167 145 1 2628 144 32 8 chr21 7456532 7457004 -27450566 - MER31A LTR ERV1 0 485 3 5142 181 25 15 chr21 7457838 7457949 -27449621 - L1PA16 LINE L1 0 6166 6058 1865 150 58 14 chr21 7457949 7458308 -27449262 - THE1C LTR MaLR 0 375 1 5142 181 25 15 chr21 7458308 7459636 -27447934 - L1PA16 LINE L1 -108 6058 4710 22 35 0 0 chr21 7459971 7460000 -27447570 + AT_rich Low_complexity Low_complexity 1 29 0 368 338 0 32 chr21 7460029 7460183 -27447387 - L2 LINE L2 0 3313 3165 735 174 38 0 chr21 7460482 7460614 -27446956 + LTR40a LTR ERVL 6 142 -377 926 216 64 39 chr21 7460734 7460885 -27446685 + MER34 LTR ERV1 11 157 -385 2536 66 0 0 chr21 7460885 7461188 -27446382 + AluY SINE Alu 1 303 -8 926 216 64 39 chr21 7461188 7461526 -27446044 + MER34 LTR ERV1 157 539 -3 248 178 0 0 chr21 7461730 7461775 -27445795 + LTR40c LTR ERVL 407 451 -14 752 164 0 79 chr21 7462079 7462251 -27445319 - FRAM SINE Alu 0 165 6 23 0 0 0 chr21 7462881 7462904 -27444666 + AT_rich Low_complexity Low_complexity 1 23 0 346 67 0 0 chr21 7463264 7463309 -27444261 - L1PA13 LINE L1 -19 6144 6100 21 57 0 0 chr21 7463829 7463864 -27443706 + AT_rich Low_complexity Low_complexity 1 35 0 505 282 34 43 chr21 7464090 7464299 -27443271 - ERVL LTR ERVL -1005 4649 4443 250 286 0 0 chr21 7464536 7464599 -27442971 - ERVL LTR ERVL -1455 4199 4137 1567 305 61 48 chr21 7464600 7464943 -27442627 - ERVL LTR ERVL -2814 2840 2503 2016 128 3 3 chr21 7464943 7465249 -27442321 - AluSg SINE Alu -2 308 3 1567 305 61 48 chr21 7465249 7466038 -27441532 - ERVL LTR ERVL -3151 2503 1722 1140 243 27 46 chr21 7466080 7466450 -27441120 - MLT1A1 LTR MaLR 0 365 3 442 291 89 57 chr21 7466516 7466920 -27440650 - MLT2F LTR ERVL 0 663 214 401 226 12 0 chr21 7466965 7467049 -27440521 - MLT2F LTR ERVL -578 85 1 23844 40 3 0 chr21 7467880 7471601 -27435969 + L1PA5 LINE L1 2410 6146 -8 321 26 0 0 chr21 7472336 7472374 -27435196 + (TA)n Simple_repeat Simple_repeat 2 39 0 1276 257 48 69 chr21 7472410 7472889 -27434681 + MLT1E1 LTR MaLR 14 482 -172 2668 211 21 36 chr21 7472934 7473366 -27434204 - L1P4 LINE L1 -583 6285 5848 2460 71 0 0 chr21 7473366 7473677 -27433893 - AluY SINE Alu 0 311 1 2668 211 21 36 chr21 7473677 7474092 -27433478 - L1P4 LINE L1 -1020 5848 5404 492 71 0 0 chr21 7474092 7474162 -27433408 - Alu SINE Alu -5 306 237 7019 242 26 33 chr21 7474162 7474690 -27432880 - L1 LINE L1 -1435 5414 4884 2161 102 7 10 chr21 7474690 7474995 -27432575 + AluSx SINE Alu 2 305 -7 7019 242 26 33 chr21 7474995 7476752 -27430818 - L1 LINE L1 -1965 4884 3144 11260 206 43 42 chr21 7476805 7476934 -27430636 - L1P4 LINE L1 -3891 2958 2831 1915 144 0 10 chr21 7476934 7477233 -27430337 + AluSq SINE Alu 1 296 -17 11260 206 43 42 chr21 7477233 7479817 -27427753 - L1P4 LINE L1 -4018 2831 240 1576 228 29 81 chr21 7479822 7480366 -27427204 - L1 LINE L1 -3104 4461 3946 2176 154 37 19 chr21 7480398 7480770 -27426800 - MSTA LTR MaLR 0 428 50 1267 173 101 25 chr21 7480770 7481047 -27426523 - MSTA LTR MaLR 0 428 131 4491 196 21 18 chr21 7481047 7481448 -27426122 - L1 LINE L1 -6664 901 503 2135 107 0 0 chr21 7481448 7481746 -27425824 - AluSc SINE Alu -11 298 1 4491 196 21 18 chr21 7481746 7482232 -27425338 - L1 LINE L1 -7062 503 11 253 333 74 37 chr21 7482234 7482396 -27425174 + L2 LINE L2 2598 2765 -549 357 172 0 62 chr21 7482512 7482576 -27424994 + MER21B LTR ERV1 643 777 -154 500 0 17 0 chr21 7484337 7484397 -27423173 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2800 229 91 40 chr21 7484484 7485287 -27422283 + MER21B LTR ERV1 19 862 -1 25 31 0 0 chr21 7485373 7485405 -27422165 + AT_rich Low_complexity Low_complexity 1 32 0 1096 84 26 0 chr21 7485635 7485790 -27421780 + L1MA1 LINE L1 6134 6292 -10 275 282 0 0 chr21 7486389 7486460 -27421110 + A-rich Low_complexity Low_complexity 2 72 0 350 229 41 8 chr21 7487090 7487212 -27420358 + (TA)n Simple_repeat Simple_repeat 1 126 0 1113 164 0 0 chr21 7487576 7487747 -27419823 - AluSg/x SINE Alu -5 305 135 29 47 0 0 chr21 7490536 7490579 -27416991 + AT_rich Low_complexity Low_complexity 1 43 0 1471 208 29 69 chr21 7490607 7491087 -27416483 - LTR37B LTR ERV1 -2 466 6 38 39 0 0 chr21 7491585 7491637 -27415933 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr21 7491825 7491856 -27415714 + AT_rich Low_complexity Low_complexity 1 31 0 2266 114 0 0 chr21 7492097 7492404 -27415166 - AluSx SINE Alu -5 307 1 21 36 0 0 chr21 7492410 7492438 -27415132 + AT_rich Low_complexity Low_complexity 1 28 0 200 196 0 39 chr21 7492975 7493026 -27414544 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1957 65 111 8 chr21 7493713 7494019 -27413551 + AluY SINE Alu 1 311 0 483 311 92 41 chr21 7494917 7495210 -27412360 + MLT1H LTR MaLR 134 441 -108 346 269 74 0 chr21 7495246 7495354 -27412216 - LTR16A1 LTR ERVL -2 455 340 268 263 68 25 chr21 7495586 7495704 -27411866 - LTR16A1 LTR ERVL -334 123 1 1286 225 56 22 chr21 7496090 7496450 -27411120 - MLT1A2 LTR MaLR 0 374 3 270 360 55 0 chr21 7496895 7497059 -27410511 - MIR SINE MIR -74 188 16 1282 114 4 2 chr21 7498746 7498975 -27408595 + AluSp SINE Alu 20 301 -12 21 57 0 0 chr21 7499109 7499144 -27408426 + AT_rich Low_complexity Low_complexity 1 35 0 2419 88 0 0 chr21 7499358 7499677 -27407893 - LTR14C LTR ERVK 0 587 269 674 207 78 52 chr21 7499688 7499886 -27407684 - L1MEc LINE L1 -4145 2251 2043 2477 185 96 8 chr21 7499886 7500357 -27407213 + MLT2B3 LTR ERVL 1 522 -32 940 58 26 19 chr21 7500357 7500511 -27407059 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 2477 185 96 8 chr21 7500511 7500548 -27407022 + MLT2B3 LTR ERVL 522 554 0 674 207 78 52 chr21 7500548 7500619 -27406951 - L1MEc LINE L1 -4353 2043 1975 1318 320 19 10 chr21 7500833 7501314 -27406256 - L1MEc LINE L1 -5865 531 47 2114 58 0 4 chr21 7501317 7501595 -27405975 + L1PA7 LINE L1 5875 6151 -3 2318 86 3 3 chr21 7502094 7502398 -27405172 + AluY SINE Alu 1 304 -7 29 78 0 0 chr21 7503047 7503111 -27404459 + AT_rich Low_complexity Low_complexity 1 64 0 1848 279 44 26 chr21 7503993 7504595 -27402975 - HERVL40 LTR ERVL -2055 982 910 195 42 0 0 chr21 7504939 7504963 -27402607 + (TC)n Simple_repeat Simple_repeat 1 24 0 585 310 5 35 chr21 7504989 7505192 -27402378 - HERVL40 LTR ERVL -3963 1567 1371 2896 104 45 23 chr21 7505237 7505279 -27402291 - MLT2A2 LTR ERVL 0 453 413 333 0 0 0 chr21 7505279 7505316 -27402254 + (CA)n Simple_repeat Simple_repeat 2 38 0 2896 104 45 23 chr21 7505316 7505716 -27401854 - MLT2A2 LTR ERVL -40 413 1 1552 214 34 26 chr21 7505772 7506111 -27401459 + L1MB5 LINE L1 5781 6125 -49 2743 146 94 14 chr21 7506111 7506598 -27400972 + MER1A DNA MER1_type 2 527 0 1552 214 34 26 chr21 7506598 7506641 -27400929 + L1MB5 LINE L1 6125 6166 -8 1638 226 62 57 chr21 7507298 7507811 -27399759 - LTR40a LTR ERVL 0 519 4 1250 132 0 0 chr21 7508353 7508527 -27399043 - AluSg/x SINE Alu -10 300 127 560 59 50 10 chr21 7508635 7508736 -27398834 + GA-rich Low_complexity Low_complexity 4 108 0 23 33 0 0 chr21 7509696 7509726 -27397844 + AT_rich Low_complexity Low_complexity 1 30 0 1219 182 47 40 chr21 7510110 7510271 -27397299 - L1MB8 LINE L1 -6 6172 6007 2321 155 20 0 chr21 7510271 7510664 -27396906 - MER57A LTR ERV1 0 403 3 1219 182 47 40 chr21 7510664 7510799 -27396771 - L1MB8 LINE L1 -171 6007 5874 264 59 0 0 chr21 7511098 7511132 -27396438 + (TC)n Simple_repeat Simple_repeat 2 35 0 1739 148 25 3 chr21 7511133 7511416 -27396154 - AluSx SINE Alu -23 289 1 246 325 38 0 chr21 7511752 7511832 -27395738 - L2 LINE L2 -4 3268 3186 2150 160 44 42 chr21 7512007 7512271 -27395299 + Tigger2a DNA MER2_type 2 269 -2439 7382 153 32 4 chr21 7512271 7513535 -27394035 + HSMAR2 DNA Mariner 2 1300 -2 2150 160 44 42 chr21 7513535 7513702 -27393868 + Tigger2a DNA MER2_type 269 434 0 32 0 0 0 chr21 7513738 7513770 -27393800 + AT_rich Low_complexity Low_complexity 1 32 0 781 320 95 53 chr21 7514477 7514983 -27392587 + HAL1 LINE L1 545 1071 -1436 21 57 0 0 chr21 7514983 7515018 -27392552 + AT_rich Low_complexity Low_complexity 1 35 0 2159 99 7 7 chr21 7518220 7518513 -27389057 + AluSx SINE Alu 1 293 -19 399 21 0 0 chr21 7518515 7518563 -27389007 + (CA)n Simple_repeat Simple_repeat 1 48 0 37 32 0 16 chr21 7518991 7519007 -27388563 + AT_rich Low_complexity Low_complexity 1 16 -45 3351 184 24 12 chr21 7519007 7519677 -27387893 - L1MB7 LINE L1 -16 6168 5491 37 32 0 16 chr21 7519677 7519722 -27387848 + AT_rich Low_complexity Low_complexity 16 61 0 805 194 99 5 chr21 7520297 7520498 -27387072 - MER45R DNA AcHobo -378 1203 984 1291 223 16 0 chr21 7520501 7520752 -27386818 + L1M1 LINE L1 18 272 -7293 949 211 0 0 chr21 7521010 7521195 -27386375 + MLT1B LTR MaLR 1 185 -205 3008 160 19 4 chr21 7521198 7521730 -27385840 + L1MA5 LINE L1 5757 6296 -4 770 229 32 5 chr21 7521774 7521962 -27385608 + MLT1B LTR MaLR 192 384 -6 619 225 20 53 chr21 7521981 7522132 -27385438 - MER45 DNA AcHobo -1435 146 1 1308 209 3 46 chr21 7522415 7522722 -27384848 + AluJo SINE Alu 1 294 -18 210 278 0 0 chr21 7522812 7522866 -27384704 - MIR SINE MIR -42 220 167 2117 107 0 10 chr21 7522940 7523248 -27384322 + AluSx SINE Alu 1 305 -7 201 250 19 157 chr21 7523650 7523758 -27383812 + L2 LINE L2 2977 3069 -203 2704 120 21 2 chr21 7524125 7524551 -27383019 - MER57B LTR ERV1 0 434 1 10711 157 31 3 chr21 7524560 7526380 -27381190 - Tigger1 DNA MER2_type 0 2418 547 2459 204 0 2 chr21 7526439 7526885 -27380685 - Tigger1 DNA MER2_type -1964 454 10 201 39 0 0 chr21 7526885 7526911 -27380659 + (TG)n Simple_repeat Simple_repeat 2 27 0 1796 208 39 25 chr21 7527347 7527769 -27379801 - MLT2B2 LTR ERVL -40 480 6 1059 255 35 19 chr21 7527877 7528191 -27379379 - MLT1H LTR MaLR -224 325 7 2320 156 34 10 chr21 7529490 7529908 -27377662 + MSTA LTR MaLR 1 428 0 735 255 11 21 chr21 7530605 7530793 -27376777 + MLT1H LTR MaLR 97 282 -267 2687 35 0 0 chr21 7532409 7532719 -27374851 + AluY SINE Alu 1 310 -1 1679 196 0 0 chr21 7532735 7533026 -27374544 + AluSx SINE Alu 9 299 -13 387 41 0 0 chr21 7534625 7534674 -27372896 + (CA)n Simple_repeat Simple_repeat 2 50 0 228 296 68 0 chr21 7534683 7534771 -27372799 - MIR SINE MIR -65 197 104 209 319 94 42 chr21 7535146 7535337 -27372233 - MIR SINE MIR -59 203 3 975 245 13 39 chr21 7535925 7535968 -27371602 - L1MD3 LINE L1 -19 7976 7933 541 89 13 0 chr21 7535968 7536047 -27371523 + MADE1 DNA Mariner 1 80 0 975 245 13 39 chr21 7536047 7536201 -27371369 - L1MD3 LINE L1 -62 7933 7787 2439 72 0 3 chr21 7536201 7536507 -27371063 - AluY SINE Alu -6 305 1 975 245 13 39 chr21 7536507 7536618 -27370952 - L1MD3 LINE L1 -208 7787 7675 22 80 0 0 chr21 7536779 7536829 -27370741 + AT_rich Low_complexity Low_complexity 1 50 0 2573 118 13 5 chr21 7537045 7537417 -27370153 + THE1C LTR MaLR 1 375 0 340 246 33 25 chr21 7537919 7538041 -27369529 + GA-rich Low_complexity Low_complexity 1 123 0 297 331 49 14 chr21 7540883 7541025 -27366545 - L2 LINE L2 -497 2817 2671 241 349 155 30 chr21 7541569 7541833 -27365737 + L2 LINE L2 2378 2674 -640 629 298 65 11 chr21 7542122 7542397 -27365173 - L1MB7 LINE L1 -10 6174 5885 877 235 77 0 chr21 7542417 7542638 -27364932 - L1ME1 LINE L1 -335 5831 5594 1301 165 57 0 chr21 7542638 7542868 -27364702 - AluJb SINE Alu -64 248 6 2217 242 23 29 chr21 7542872 7543834 -27363736 - L1ME1 LINE L1 -574 5604 4656 240 274 29 10 chr21 7544240 7544342 -27363228 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 2010 140 56 25 chr21 7544624 7544981 -27362589 - MER39 LTR ERV1 0 707 340 305 182 12 4 chr21 7544982 7545062 -27362508 - MER39 LTR ERV1 -418 254 154 589 157 67 129 chr21 7545065 7545243 -27362327 + THE1C LTR MaLR 3 169 -206 2428 43 3 0 chr21 7545247 7545547 -27362023 + L1PA4 LINE L1 5852 6152 -3 209 122 24 0 chr21 7545576 7545617 -27361953 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1054 122 29 44 chr21 7545619 7545823 -27361747 + THE1C LTR MaLR 175 375 0 1045 136 114 5 chr21 7545823 7546006 -27361564 - MER39 LTR ERV1 -504 203 1 264 30 0 0 chr21 7546576 7546609 -27360961 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 27 73 0 0 chr21 7548946 7549001 -27358569 + AT_rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr21 7549960 7549986 -27357584 + AT_rich Low_complexity Low_complexity 1 26 0 368 268 39 46 chr21 7550198 7550351 -27357219 + L2 LINE L2 2226 2377 -937 294 29 0 0 chr21 7550954 7550989 -27356581 + (TC)n Simple_repeat Simple_repeat 2 36 0 321 68 0 0 chr21 7550988 7551032 -27356538 + (TG)n Simple_repeat Simple_repeat 1 44 0 5985 194 58 35 chr21 7551034 7552138 -27355432 - L1MC3 LINE L1 -743 5403 4326 369 0 0 0 chr21 7552138 7552179 -27355391 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1985 102 7 18 chr21 7552182 7552467 -27355103 - AluSp SINE Alu -31 282 1 5985 194 58 35 chr21 7552467 7552973 -27354597 - L1MC3 LINE L1 -456 5690 5197 564 191 23 30 chr21 7552992 7553123 -27354447 - L1MCb LINE L1 -5742 303 174 3051 232 16 21 chr21 7553333 7554138 -27353432 + L1MC3 LINE L1 6962 7762 -23 1854 206 71 64 chr21 7554627 7555176 -27352394 + MLT2B3 LTR ERVL 1 553 -1 28 0 0 0 chr21 7557794 7557822 -27349748 + AT_rich Low_complexity Low_complexity 1 28 0 2182 138 36 17 chr21 7557826 7558238 -27349332 - L1MA3 LINE L1 -6 6299 5880 21 57 0 0 chr21 7558652 7558687 -27348883 + AT_rich Low_complexity Low_complexity 1 35 0 1556 192 20 10 chr21 7560567 7560864 -27346706 - AluJo SINE Alu -12 300 1 22 0 0 0 chr21 7561914 7561936 -27345634 + AT_rich Low_complexity Low_complexity 1 22 0 2877 191 34 31 chr21 7565792 7566472 -27341098 - L1MC2 LINE L1 -132 6212 5531 2129 234 18 37 chr21 7566523 7567400 -27340170 - L1MC2 LINE L1 -743 5403 4653 5687 103 0 0 chr21 7567505 7567696 -27339874 - L1PB1 LINE L1 0 6151 5961 2002 138 3 0 chr21 7567696 7567993 -27339577 - AluSp SINE Alu -15 298 1 5687 103 0 0 chr21 7567993 7568806 -27338764 - L1PB1 LINE L1 -189 5962 5161 7515 213 20 1 chr21 7568822 7570113 -27337457 + L1 LINE L1 2377 3709 -2437 213 65 0 0 chr21 7570113 7570144 -27337426 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7515 213 20 1 chr21 7570144 7570539 -27337031 + L1 LINE L1 3709 4095 -2051 186 103 0 0 chr21 7571834 7571863 -27335707 + (TA)n Simple_repeat Simple_repeat 2 30 0 201 239 0 0 chr21 7572182 7572228 -27335342 + A-rich Low_complexity Low_complexity 3 48 0 180 0 0 0 chr21 7573158 7573178 -27334392 + (TA)n Simple_repeat Simple_repeat 1 20 0 237 215 15 15 chr21 7573224 7573289 -27334281 + (TA)n Simple_repeat Simple_repeat 1 65 0 23 0 0 0 chr21 7575011 7575034 -27332536 + AT_rich Low_complexity Low_complexity 1 23 0 799 241 42 23 chr21 7575613 7575829 -27331741 + LTR50 LTR ERVL 4 223 -572 212 143 24 0 chr21 7576098 7576140 -27331430 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2835 206 15 18 chr21 7576143 7576744 -27330826 + MER6A DNA MER2_type 6 604 -1 277 136 59 34 chr21 7576744 7576862 -27330708 + (TA)n Simple_repeat Simple_repeat 1 121 0 342 168 16 79 chr21 7576774 7576964 -27330606 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 1446 214 84 9 chr21 7577017 7577349 -27330221 - MLT1A1 LTR MaLR 0 365 9 419 188 0 8 chr21 7577406 7577534 -27330036 + (TA)n Simple_repeat Simple_repeat 1 127 0 435 19 0 0 chr21 7578884 7578936 -27328634 + (CA)n Simple_repeat Simple_repeat 1 52 0 34 96 0 0 chr21 7579171 7579275 -27328295 + AT_rich Low_complexity Low_complexity 1 104 0 1344 244 98 34 chr21 7579835 7580045 -27327525 + MLT1C LTR MaLR 1 196 -271 2180 108 7 0 chr21 7580045 7580350 -27327220 - AluSx SINE Alu -5 307 1 1344 244 98 34 chr21 7580350 7580578 -27326992 + MLT1C LTR MaLR 196 467 0 23 0 0 0 chr21 7581202 7581225 -27326345 + AT_rich Low_complexity Low_complexity 1 23 0 2358 178 34 2 chr21 7581969 7582412 -27325158 + MSTB2 LTR MaLR 1 457 0 240 35 0 0 chr21 7582576 7582605 -27324965 + (TG)n Simple_repeat Simple_repeat 2 30 0 211 176 0 0 chr21 7582804 7582838 -27324732 + (CAT)n Simple_repeat Simple_repeat 3 36 0 4171 169 32 6 chr21 7582839 7583617 -27323953 - L1MC1 LINE L1 -197 6136 5341 246 208 0 0 chr21 7584901 7584954 -27322616 + (TA)n Simple_repeat Simple_repeat 1 53 0 243 0 0 0 chr21 7585882 7585909 -27321661 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr21 7586312 7586340 -27321230 + AT_rich Low_complexity Low_complexity 1 28 0 30 105 0 0 chr21 7587914 7588028 -27319542 + AT_rich Low_complexity Low_complexity 1 114 0 731 222 106 28 chr21 7588171 7588455 -27319115 + Zaphod DNA AcHobo 3709 4014 -9 229 313 107 71 chr21 7588732 7589042 -27318528 + MLT1K LTR MaLR 190 510 -78 21 0 0 0 chr21 7589467 7589488 -27318082 + AT_rich Low_complexity Low_complexity 1 21 0 315 295 123 62 chr21 7589517 7589658 -27317912 - L2 LINE L2 -244 3069 2905 1989 158 48 22 chr21 7589658 7590013 -27317557 + THE1B LTR MaLR 1 364 0 315 295 123 62 chr21 7590013 7590115 -27317455 - L2 LINE L2 -408 2905 2811 1927 198 19 3 chr21 7590361 7590720 -27316850 - MLT1A1 LTR MaLR 0 365 1 25 0 0 0 chr21 7592473 7592498 -27315072 + AT_rich Low_complexity Low_complexity 1 25 0 1431 134 5 0 chr21 7592589 7592805 -27314765 - AluSg/x SINE Alu 0 310 94 374 214 51 20 chr21 7592896 7592994 -27314576 - MLT1J2 LTR MaLR -345 105 5 2662 208 71 79 chr21 7595097 7595873 -27311697 - MER21A LTR ERV1 -26 905 136 711 183 12 49 chr21 7595875 7596052 -27311518 - MER21A LTR ERV1 -531 165 13 29 70 0 0 chr21 7596679 7596736 -27310834 + AT_rich Low_complexity Low_complexity 1 57 0 542 342 50 35 chr21 7598154 7598390 -27309180 - L1ME4a LINE L1 -195 5926 5680 2161 168 16 45 chr21 7598390 7598837 -27308733 - Tigger2a DNA MER2_type 0 434 1 542 342 50 35 chr21 7598837 7599000 -27308570 - L1ME4a LINE L1 -441 5680 5521 607 157 0 82 chr21 7599360 7599494 -27308076 - MER82 DNA MER2_type -250 403 281 929 215 5 0 chr21 7599518 7599704 -27307866 + MER2 DNA MER2_type 23 209 -135 1491 185 0 11 chr21 7599804 7600074 -27307496 - MER82 DNA MER2_type -373 280 14 255 371 89 5 chr21 7600112 7600314 -27307256 + L1MEd LINE L1 115 333 -5786 2672 29 7 0 chr21 7600402 7600710 -27306860 + AluY SINE Alu 2 311 0 299 314 90 6 chr21 7600806 7600962 -27306608 + L1MEd LINE L1 506 674 -5445 34 65 0 0 chr21 7601062 7601124 -27306446 + AT_rich Low_complexity Low_complexity 1 62 0 304 320 115 51 chr21 7601172 7601425 -27306145 + L1MEd LINE L1 989 1257 -4862 1927 148 0 13 chr21 7601616 7601914 -27305656 + AluSx SINE Alu 1 294 -18 294 164 0 0 chr21 7601924 7601979 -27305591 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 68 0 0 chr21 7602181 7602225 -27305345 + AT_rich Low_complexity Low_complexity 1 44 0 284 102 20 0 chr21 7602742 7602791 -27304779 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 204 135 0 0 chr21 7603376 7603413 -27304157 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1459 86 14 32 chr21 7603413 7603634 -27303936 - AluSx SINE Alu -32 280 64 348 313 68 6 chr21 7603634 7603797 -27303773 + L1M4 LINE L1 3911 4083 -2063 21 89 0 0 chr21 7603947 7604003 -27303567 + AT_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr21 7604126 7604160 -27303410 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr21 7604206 7604234 -27303336 + AT_rich Low_complexity Low_complexity 1 28 0 346 304 103 16 chr21 7604367 7604551 -27303019 + L1M4 LINE L1 4741 4940 -1206 22 0 0 0 chr21 7604651 7604673 -27302897 + AT_rich Low_complexity Low_complexity 1 22 0 262 246 0 0 chr21 7604889 7604946 -27302624 - MIR SINE MIR -70 192 136 2162 95 0 10 chr21 7606130 7606426 -27301144 + AluSx SINE Alu 1 293 -19 2148 92 3 0 chr21 7607008 7607291 -27300279 + AluSg SINE Alu 1 284 -26 432 0 0 0 chr21 7607291 7607339 -27300231 + (CATA)n Simple_repeat Simple_repeat 2 49 0 277 176 12 35 chr21 7607590 7607675 -27299895 + CT-rich Low_complexity Low_complexity 2 84 0 340 276 0 0 chr21 7607838 7607914 -27299656 + L2 LINE L2 3238 3313 0 2201 161 31 0 chr21 7608070 7608461 -27299109 + L1PB4 LINE L1 5754 6156 0 206 387 77 18 chr21 7608538 7608760 -27298810 + L2 LINE L2 2828 3062 -251 502 186 0 110 chr21 7609104 7609249 -27298321 - MER3 DNA MER1_type 0 209 81 1562 195 96 3 chr21 7609319 7609653 -27297917 + MLT1A1 LTR MaLR 1 365 0 1493 235 104 46 chr21 7610309 7610790 -27296780 + MER67D LTR ERV1 3 511 -3 25 0 0 0 chr21 7610867 7610892 -27296678 + AT_rich Low_complexity Low_complexity 1 25 0 410 165 0 12 chr21 7611199 7611284 -27296286 + CT-rich Low_complexity Low_complexity 3 86 0 243 0 0 0 chr21 7611302 7611329 -27296241 + (TG)n Simple_repeat Simple_repeat 1 27 0 251 231 132 33 chr21 7612651 7612742 -27294828 + LTR48 LTR ERV1 353 452 -335 5552 148 32 7 chr21 7612742 7614239 -27293331 + L1PA10 LINE L1 2147 3605 -2563 312 27 0 0 chr21 7614239 7614276 -27293294 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5552 148 32 7 chr21 7614276 7616287 -27291283 + L1PA10 LINE L1 3605 5819 -349 2265 118 6 11 chr21 7616350 7616698 -27290872 + L1PA10 LINE L1 5820 6165 -3 493 285 54 62 chr21 7617540 7617782 -27289788 + L1MC4 LINE L1 6746 6985 -1057 25 31 0 0 chr21 7618167 7618199 -27289371 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 7619172 7619195 -27288375 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr21 7619523 7619560 -27288010 + AT_rich Low_complexity Low_complexity 1 37 0 542 159 23 15 chr21 7620722 7620854 -27286716 + CT-rich Low_complexity Low_complexity 2 134 0 305 117 17 0 chr21 7621014 7621074 -27286496 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 57 0 0 chr21 7621255 7621290 -27286280 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr21 7622601 7622637 -27284933 + AT_rich Low_complexity Low_complexity 1 36 0 321 185 0 0 chr21 7623373 7623438 -27284132 + GA-rich Low_complexity Low_complexity 3 67 0 1917 188 6 0 chr21 7624917 7625258 -27282312 + MER61A LTR ERV1 1 343 0 219 286 0 0 chr21 7626553 7626616 -27280954 + (CATA)n Simple_repeat Simple_repeat 3 65 0 1881 153 3 13 chr21 7626648 7626962 -27280608 - AluSx SINE Alu -1 311 1 28 61 0 0 chr21 7627458 7627507 -27280063 + AT_rich Low_complexity Low_complexity 1 49 0 584 292 135 0 chr21 7627915 7628093 -27279477 + MER119 DNA MER1_type 4 205 -378 680 164 34 28 chr21 7628108 7628285 -27279285 + MER119 DNA MER1_type 329 506 -77 2136 126 7 7 chr21 7628287 7628589 -27278981 - AluSx SINE Alu -8 304 3 1648 221 9 14 chr21 7629020 7629369 -27278201 - MER65C LTR ERV1 -112 349 3 1551 196 3 25 chr21 7629922 7630238 -27277332 - AluJb SINE Alu -2 310 2 222 146 21 0 chr21 7630634 7630682 -27276888 + (TA)n Simple_repeat Simple_repeat 1 49 0 1427 239 98 25 chr21 7630893 7631291 -27276279 + MLT1F1 LTR MaLR 1 427 -140 23 33 0 0 chr21 7632497 7632527 -27275043 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr21 7633448 7633496 -27274074 + AT_rich Low_complexity Low_complexity 1 48 0 219 300 14 0 chr21 7633775 7633784 -27273786 + (TATATG)n Simple_repeat Simple_repeat 4 11 -63 189 0 0 0 chr21 7633784 7633805 -27273765 + (CA)n Simple_repeat Simple_repeat 2 22 0 219 300 14 0 chr21 7633805 7633865 -27273705 + (TATATG)n Simple_repeat Simple_repeat 11 74 0 1101 131 0 0 chr21 7633866 7634042 -27273528 + (TA)n Simple_repeat Simple_repeat 1 176 0 1749 161 64 25 chr21 7634042 7634402 -27273168 - THE1C LTR MaLR -1 374 1 349 316 58 0 chr21 7634492 7634717 -27272853 + L1P LINE L1 3673 3910 -2236 1063 138 35 42 chr21 7634718 7635002 -27272568 - THE1C LTR MaLR 0 375 1 5768 154 9 40 chr21 7635002 7636009 -27271561 - THE1C-int LTR MaLR 0 1580 605 850 309 25 37 chr21 7636055 7636463 -27271107 + L1ME LINE L1 3943 4345 -1801 599 240 22 44 chr21 7636485 7636714 -27270856 + L1ME LINE L1 5374 5597 -567 24 32 0 0 chr21 7637280 7637311 -27270259 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 7638046 7638069 -27269501 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 7639149 7639177 -27268393 + AT_rich Low_complexity Low_complexity 1 28 0 449 196 34 7 chr21 7639773 7639889 -27267681 - MLT1F1 LTR MaLR 0 567 474 1546 230 71 29 chr21 7642941 7643004 -27264566 - MLT2B1 LTR ERVL 0 515 456 369 43 0 0 chr21 7643004 7643051 -27264519 + (CA)n Simple_repeat Simple_repeat 2 48 0 1546 230 71 29 chr21 7643051 7643496 -27264074 - MLT2B1 LTR ERVL -59 456 1 211 192 39 0 chr21 7643683 7643735 -27263835 + (CTTAA)n Simple_repeat Simple_repeat 4 57 0 22 35 0 0 chr21 7643833 7643862 -27263708 + AT_rich Low_complexity Low_complexity 1 29 0 276 208 65 52 chr21 7644698 7644775 -27262795 - L2 LINE L2 0 3313 3236 1656 192 16 0 chr21 7645407 7645592 -27261978 - AluJb SINE Alu 0 312 119 252 0 0 0 chr21 7645592 7645620 -27261950 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1656 192 16 0 chr21 7645620 7645741 -27261829 - AluJb SINE Alu -193 119 1 289 355 118 21 chr21 7646078 7646365 -27261205 + L2 LINE L2 2925 3239 -74 21 36 0 0 chr21 7646399 7646427 -27261143 + AT_rich Low_complexity Low_complexity 1 28 0 2740 10 0 3 chr21 7646615 7646923 -27260647 + AluYa5 SINE Alu 1 307 -4 4647 219 41 20 chr21 7647219 7648442 -27259128 - L1MC3 LINE L1 0 7785 6570 213 169 0 0 chr21 7648446 7648505 -27259065 + (TA)n Simple_repeat Simple_repeat 2 60 0 859 249 40 16 chr21 7648509 7648762 -27258808 - L1MC3 LINE L1 -1139 6646 6388 625 332 44 22 chr21 7648796 7649386 -27258184 - L1MCb LINE L1 -3942 2803 2201 601 276 15 49 chr21 7649410 7649576 -27257994 - L1MCb LINE L1 -4507 2139 1969 2674 29 0 0 chr21 7649576 7649882 -27257688 + AluYb8 SINE Alu 1 306 -12 601 276 15 49 chr21 7649882 7650079 -27257491 - L1MCb LINE L1 -4677 1969 1794 180 0 0 0 chr21 7650101 7650121 -27257449 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2959 242 44 49 chr21 7650189 7650268 -27257302 - L1MCb LINE L1 -4851 1194 1116 1540 138 0 0 chr21 7650268 7650485 -27257085 - AluSg/x SINE Alu -19 291 75 2959 242 44 49 chr21 7650485 7651063 -27256507 - L1MCb LINE L1 -4929 1116 889 1940 137 3 25 chr21 7651063 7651377 -27256193 + AluSx SINE Alu 1 307 -5 2959 242 44 49 chr21 7651377 7652221 -27255349 - L1MCb LINE L1 -5156 889 42 1956 150 34 47 chr21 7653880 7654093 -27253477 - THE1C LTR MaLR 0 375 168 2054 121 17 3 chr21 7654093 7654382 -27253188 + AluSx SINE Alu 3 295 -17 1956 150 34 47 chr21 7654382 7654548 -27253022 - THE1C LTR MaLR -207 168 1 23 0 0 0 chr21 7655086 7655109 -27252461 + AT_rich Low_complexity Low_complexity 1 23 0 2273 94 0 7 chr21 7659678 7659975 -27247595 + AluSg SINE Alu 3 297 -13 2056 143 0 0 chr21 7660630 7660937 -27246633 - AluSp SINE Alu -6 307 1 232 341 24 24 chr21 7661003 7661170 -27246400 - MLT1L LTR MaLR -312 303 137 1102 249 30 19 chr21 7663166 7663528 -27244042 + L1M4 LINE L1 2724 3089 -3057 1080 151 0 6 chr21 7663531 7663697 -27243873 + U1 snRNA snRNA 1 165 0 393 267 26 5 chr21 7663720 7663911 -27243659 + L1M4 LINE L1 3063 3257 -2889 443 222 0 6 chr21 7663914 7664094 -27243476 + (TA)n Simple_repeat Simple_repeat 2 180 0 819 154 0 0 chr21 7664116 7664285 -27243285 + (TA)n Simple_repeat Simple_repeat 2 170 0 313 245 0 43 chr21 7664291 7664385 -27243185 + L1MC4 LINE L1 6614 6703 -1339 1155 142 6 11 chr21 7664409 7664592 -27242978 - MER4B LTR ERV1 -5 605 424 375 211 13 0 chr21 7664594 7664670 -27242900 - MER4A LTR ERV1 -146 518 442 431 203 0 0 chr21 7664706 7664780 -27242790 - MER4A LTR ERV1 -219 445 372 452 183 0 12 chr21 7664833 7664915 -27242655 - MER4A LTR ERV1 -567 97 17 1293 306 39 6 chr21 7665002 7665547 -27242023 + L1M4 LINE L1 3330 3892 -2254 587 267 43 0 chr21 7665557 7665718 -27241852 + L1M4 LINE L1 3958 4125 -2021 2200 116 0 0 chr21 7665830 7666140 -27241430 + AluSg SINE Alu 1 310 0 2548 276 25 10 chr21 7666691 7667607 -27239963 + L1M4 LINE L1 2211 3140 -3006 1972 103 41 14 chr21 7668059 7668350 -27239220 - AluSx SINE Alu -13 299 1 189 74 0 0 chr21 7668452 7668479 -27239091 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 28 71 0 0 chr21 7669791 7669847 -27237723 + AT_rich Low_complexity Low_complexity 1 56 0 395 358 74 42 chr21 7670487 7670772 -27236798 + L1MEd LINE L1 124 417 -5702 2207 100 3 7 chr21 7671041 7671350 -27236220 - AluSg SINE Alu -2 308 1 215 159 23 0 chr21 7671526 7671570 -27236000 + A-rich Low_complexity Low_complexity 2 46 0 447 320 62 0 chr21 7672172 7672350 -27235220 + L1MEd LINE L1 2203 2391 -3738 24 32 0 0 chr21 7672470 7672501 -27235069 + AT_rich Low_complexity Low_complexity 1 31 0 470 329 62 40 chr21 7672601 7672972 -27234598 - L1ME3A LINE L1 -107 6063 5685 1052 276 70 17 chr21 7672999 7673354 -27234216 - L1ME3A LINE L1 -540 5630 5257 22 35 0 0 chr21 7673446 7673475 -27234095 + AT_rich Low_complexity Low_complexity 1 29 0 26 74 0 0 chr21 7673544 7673598 -27233972 + AT_rich Low_complexity Low_complexity 1 54 0 1522 198 3 20 chr21 7673598 7673891 -27233679 - AluJo SINE Alu -24 288 1 620 291 65 28 chr21 7673981 7674441 -27233129 - L1ME3A LINE L1 -1250 4896 4420 1024 208 60 13 chr21 7674876 7675193 -27232377 + L1MEd LINE L1 2960 3291 -2838 1629 203 25 6 chr21 7675210 7675570 -27232000 + L1MEd LINE L1 3657 4023 -2106 21 57 0 0 chr21 7675571 7675606 -27231964 + AT_rich Low_complexity Low_complexity 1 35 0 281 26 26 0 chr21 7675850 7675888 -27231682 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 70 0 0 chr21 7676496 7676539 -27231031 + AT_rich Low_complexity Low_complexity 1 43 0 1932 100 3 97 chr21 7676745 7677076 -27230494 - AluSx SINE Alu -2 300 1 4045 117 14 11 chr21 7681113 7681755 -27225815 - L1PA13 LINE L1 0 6163 5520 372 47 31 16 chr21 7682844 7682908 -27224662 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1134 132 0 0 chr21 7683515 7683682 -27223888 + AluSg/x SINE Alu 131 297 -13 282 188 0 0 chr21 7683725 7683773 -27223797 + MLT1F LTR MaLR 489 536 -6 25 0 0 0 chr21 7684882 7684907 -27222663 + AT_rich Low_complexity Low_complexity 1 25 0 180 77 0 0 chr21 7685271 7685297 -27222273 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 31 58 0 0 chr21 7685336 7685388 -27222182 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr21 7685903 7685926 -27221644 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr21 7686339 7686362 -27221208 + AT_rich Low_complexity Low_complexity 1 23 0 607 325 25 17 chr21 7687236 7687473 -27220097 + L2 LINE L2 2205 2443 -871 510 240 56 28 chr21 7687547 7687726 -27219844 + MLT1J1 LTR MaLR 96 279 -167 324 334 114 43 chr21 7687898 7688248 -27219322 + L2 LINE L2 2500 2874 -440 385 309 119 41 chr21 7688570 7688865 -27218705 - L1ME LINE L1 -534 5636 5319 5146 153 22 35 chr21 7689227 7690377 -27217193 + L1PA15 LINE L1 5007 6152 -13 2095 127 7 0 chr21 7690514 7690813 -27216757 - AluSx SINE Alu -11 301 1 441 177 25 0 chr21 7690833 7690912 -27216658 - AluY SINE Alu -16 295 215 388 285 54 16 chr21 7692084 7692270 -27215300 - MER46C DNA MER2_type -145 193 1 30 45 0 0 chr21 7692481 7692525 -27215045 + AT_rich Low_complexity Low_complexity 1 44 0 1623 226 8 8 chr21 7693333 7693696 -27213874 - MLT1A1 LTR MaLR 0 365 3 28 48 0 0 chr21 7693732 7693774 -27213796 + AT_rich Low_complexity Low_complexity 1 42 0 2744 19 0 0 chr21 7693801 7694114 -27213456 + AluYb8 SINE Alu 1 313 -5 6996 40 1 0 chr21 7694276 7695120 -27212450 - L1PA4 LINE L1 -1 6154 5310 4890 34 3 0 chr21 7695115 7695712 -27211858 + L1PA4 LINE L1 4711 5309 -837 667 208 8 0 chr21 7696420 7696540 -27211030 - FLAM_A SINE Alu -16 126 6 21 36 0 0 chr21 7697137 7697165 -27210405 + AT_rich Low_complexity Low_complexity 1 28 0 697 304 39 0 chr21 7698033 7698240 -27209330 + MER58C DNA MER1_type 1 215 0 1939 221 34 23 chr21 7698252 7698782 -27208788 - L1MB8 LINE L1 0 6178 5643 407 270 52 28 chr21 7698794 7699005 -27208565 - L1ME LINE L1 -801 5345 5130 829 206 0 0 chr21 7699022 7699187 -27208383 - L1ME LINE L1 -1075 5071 4907 638 196 67 63 chr21 7702332 7702570 -27205000 + MLT1A1 LTR MaLR 1 301 -95 432 254 45 9 chr21 7702947 7703116 -27204454 + FLAM_A SINE Alu 1 173 0 1123 330 59 11 chr21 7704225 7704786 -27202784 + L2 LINE L2 2061 2648 -666 456 308 120 57 chr21 7704843 7705291 -27202279 + L2 LINE L2 2722 3212 -101 1851 246 105 20 chr21 7705291 7705843 -27201727 - MLT1E2 LTR MaLR 0 626 28 258 363 45 72 chr21 7706831 7707206 -27200364 - L2 LINE L2 -383 2931 2567 25 31 0 0 chr21 7707344 7707376 -27200194 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 7708846 7708885 -27198685 + AT_rich Low_complexity Low_complexity 1 39 0 1576 187 26 0 chr21 7708885 7709158 -27198412 - AluJo SINE Alu -25 287 8 23 0 0 0 chr21 7711440 7711463 -27196107 + AT_rich Low_complexity Low_complexity 1 23 0 271 292 9 19 chr21 7711469 7711575 -27195995 + GA-rich Low_complexity Low_complexity 2 106 0 21 0 0 0 chr21 7711886 7711907 -27195663 + AT_rich Low_complexity Low_complexity 1 21 0 582 198 26 9 chr21 7711909 7712025 -27195545 - FLAM_A SINE Alu -15 118 1 2031 148 0 0 chr21 7712635 7712933 -27194637 + AluSx SINE Alu 3 300 -12 22 0 0 0 chr21 7713063 7713085 -27194485 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr21 7715044 7715082 -27192488 + AT_rich Low_complexity Low_complexity 1 38 0 353 181 49 62 chr21 7715161 7715305 -27192265 - MER69 DNA AcHobo -7 2519 2378 21 36 0 0 chr21 7715774 7715802 -27191768 + AT_rich Low_complexity Low_complexity 1 28 0 1497 175 45 78 chr21 7717103 7717502 -27190068 - MLT1B LTR MaLR 0 390 5 225 200 0 0 chr21 7717632 7717672 -27189898 + (CATA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr21 7717869 7717893 -27189677 + AT_rich Low_complexity Low_complexity 1 24 0 2271 89 3 3 chr21 7718335 7718639 -27188931 + AluSp SINE Alu 1 304 -9 1868 188 9 6 chr21 7718935 7719280 -27188290 - MER7A DNA MER2_type -1 345 2 260 242 0 16 chr21 7720227 7720289 -27187281 - MLT2D LTR ERVL -353 61 1 923 237 40 18 chr21 7721364 7721588 -27185982 + MLT2B1 LTR ERVL 1 229 -291 185 0 40 0 chr21 7721592 7721617 -27185953 + (TC)n Simple_repeat Simple_repeat 1 26 0 261 246 14 14 chr21 7721636 7721705 -27185865 + MLT2B1 LTR ERVL 386 454 -66 405 81 0 0 chr21 7721705 7721767 -27185803 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 258 136 0 0 chr21 7723655 7723699 -27183871 + (CA)n Simple_repeat Simple_repeat 1 44 0 2311 156 4 31 chr21 7723777 7724227 -27183343 + L1MA4A LINE L1 5864 6301 -2 220 246 0 16 chr21 7725434 7725495 -27182075 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr21 7725968 7726008 -27181562 + AT_rich Low_complexity Low_complexity 1 40 0 315 0 0 0 chr21 7726586 7726621 -27180949 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 0 0 0 chr21 7726645 7726677 -27180893 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 873 247 74 39 chr21 7726678 7726967 -27180603 + L1MC4 LINE L1 6648 6783 -1002 1653 188 33 18 chr21 7726967 7727049 -27180521 - MER2 DNA MER2_type 0 344 265 2251 101 0 16 chr21 7727049 7727367 -27180203 + AluSp SINE Alu 1 313 0 1653 188 33 18 chr21 7727367 7727620 -27179950 - MER2 DNA MER2_type -79 265 4 575 236 0 0 chr21 7727805 7727915 -27179655 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 232 190 40 10 chr21 7728065 7728165 -27179405 + (TA)n Simple_repeat Simple_repeat 1 103 0 296 355 47 33 chr21 7728945 7729156 -27178414 - MLT1J LTR MaLR -115 396 183 543 302 146 40 chr21 7729560 7729937 -27177633 - HAL1 LINE L1 -860 1647 1231 1793 178 98 25 chr21 7729965 7730364 -27177206 + MSTA LTR MaLR 1 428 0 8492 161 6 49 chr21 7730366 7730741 -27176829 + MSTA-int LTR MaLR 3 393 -1187 2187 81 0 3 chr21 7730741 7731052 -27176518 - AluY SINE Alu 0 310 1 8492 161 6 49 chr21 7731052 7732325 -27175245 + MSTA-int LTR MaLR 393 1580 0 1863 157 152 11 chr21 7732325 7732700 -27174870 + MSTA LTR MaLR 1 428 0 1436 184 92 3 chr21 7733981 7734297 -27173273 + MER2 DNA MER2_type 1 344 0 276 273 66 16 chr21 7734523 7734644 -27172926 + MIR SINE MIR 78 204 -58 34 55 0 0 chr21 7734714 7734769 -27172801 + AT_rich Low_complexity Low_complexity 1 55 0 326 398 59 0 chr21 7735605 7735723 -27171847 - L2 LINE L2 0 3272 3148 2472 59 3 0 chr21 7735870 7736175 -27171395 - AluY SINE Alu -5 306 1 246 340 0 39 chr21 7736329 7736432 -27171138 - MIR SINE MIR -116 146 48 2054 203 3 0 chr21 7736432 7736821 -27170749 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr21 7737356 7737380 -27170190 + AT_rich Low_complexity Low_complexity 1 24 0 1091 145 0 0 chr21 7737461 7737627 -27169943 - AluSp SINE Alu -11 302 137 2163 175 58 17 chr21 7739581 7739992 -27167578 + MSTA LTR MaLR 1 428 0 32 43 0 0 chr21 7741911 7741957 -27165613 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 7742125 7742147 -27165423 + AT_rich Low_complexity Low_complexity 1 22 0 29687 117 8 9 chr21 7742236 7748693 -27158877 + L1PA7 LINE L1 1 6466 -3 235 296 77 42 chr21 7748722 7748950 -27158620 - MLT1L LTR MaLR -79 536 207 2778 13 0 0 chr21 7749001 7749308 -27158262 - AluYb8 SINE Alu -11 307 1 283 342 61 0 chr21 7749320 7749434 -27158136 - MLT1L LTR MaLR -372 243 123 257 318 0 0 chr21 7749624 7749687 -27157883 - MIR SINE MIR -152 110 48 2028 293 33 5 chr21 7751588 7752188 -27155382 - MLT2F LTR ERVL -44 619 3 299 318 40 8 chr21 7752278 7752404 -27155166 - L1ME LINE L1 -707 5455 5326 31 92 0 0 chr21 7752728 7752815 -27154755 + AT_rich Low_complexity Low_complexity 1 87 0 2617 231 58 67 chr21 7754319 7755189 -27152381 - MER21B LTR ERV1 -1 862 1 866 175 30 98 chr21 7756387 7756621 -27150949 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 7756684 7756712 -27150858 + AT_rich Low_complexity Low_complexity 1 28 0 632 280 37 26 chr21 7756992 7757527 -27150043 + L1M4 LINE L1 2117 2698 -3448 1637 212 3 0 chr21 7758001 7758307 -27149263 + AluJb SINE Alu 1 307 -5 23 78 0 0 chr21 7758364 7758415 -27149155 + AT_rich Low_complexity Low_complexity 1 51 0 330 322 7 34 chr21 7759215 7759364 -27148206 - MIR3 SINE MIR -4 204 60 2045 132 3 0 chr21 7760530 7760825 -27146745 + AluSg SINE Alu 1 296 -14 2068 169 9 0 chr21 7761941 7762285 -27145285 - MER7A DNA MER2_type 0 346 2 269 247 79 11 chr21 7763290 7763379 -27144191 + MIR SINE MIR 95 189 -73 186 43 0 0 chr21 7763553 7763576 -27143994 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 2061 100 7 0 chr21 7763576 7763855 -27143715 - AluSq SINE Alu -32 281 1 24 32 0 0 chr21 7764068 7764099 -27143471 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr21 7765137 7765157 -27142413 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 11144 188 24 27 chr21 7765670 7769305 -27138265 + L1PA15 LINE L1 2544 6163 -2 439 277 13 26 chr21 7770049 7770204 -27137366 - MLT1E LTR MaLR -2 591 439 956 163 121 0 chr21 7770207 7770397 -27137173 + MER46B DNA MER2_type 3 90 -146 21 36 0 0 chr21 7772789 7772817 -27134753 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr21 7774725 7774755 -27132815 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 7774819 7774843 -27132727 + AT_rich Low_complexity Low_complexity 1 24 0 1456 192 33 59 chr21 7775273 7775316 -27132254 - MLT1B LTR MaLR 0 390 347 1971 160 33 30 chr21 7775316 7775679 -27131891 - THE1B LTR MaLR 0 364 1 1456 192 33 59 chr21 7775679 7776025 -27131545 - MLT1B LTR MaLR -43 347 11 1511 212 24 17 chr21 7776052 7776340 -27131230 + AluJo SINE Alu 3 292 -20 1056 207 66 77 chr21 7776693 7777070 -27130500 + MER93b LTR ERV1 1 373 0 2346 55 7 35 chr21 7777292 7777602 -27129968 + AluY SINE Alu 1 301 -10 1284 175 30 26 chr21 7777733 7778001 -27129569 - AluSx SINE Alu -4 308 40 288 130 0 0 chr21 7779262 7779308 -27128262 + (TA)n Simple_repeat Simple_repeat 2 47 0 1265 223 32 8 chr21 7779438 7779895 -27127675 + MLT1D LTR MaLR 1 505 0 275 49 24 0 chr21 7779967 7780008 -27127562 + (CA)n Simple_repeat Simple_repeat 1 42 0 204 40 0 0 chr21 7780007 7780032 -27127538 + (GA)n Simple_repeat Simple_repeat 2 26 0 1716 175 57 14 chr21 7780116 7780465 -27127105 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr21 7781316 7781344 -27126226 + AT_rich Low_complexity Low_complexity 1 28 0 576 160 50 25 chr21 7781620 7781739 -27125831 + MER34 LTR ERV1 24 145 -397 23 0 0 0 chr21 7781832 7781855 -27125715 + AT_rich Low_complexity Low_complexity 1 23 0 1961 282 28 39 chr21 7781896 7782308 -27125262 + L1ME1 LINE L1 131 533 -5863 1399 246 86 44 chr21 7782308 7782807 -27124763 - MLT2B1 LTR ERVL 0 520 1 1961 282 28 39 chr21 7782807 7783121 -27124449 + L1ME1 LINE L1 533 849 -5547 325 281 61 57 chr21 7783207 7783699 -27123871 + L1ME1 LINE L1 996 1489 -4907 1872 240 81 52 chr21 7783728 7784677 -27122893 + L1ME1 LINE L1 4684 5689 -546 2371 61 0 48 chr21 7784677 7784988 -27122582 - AluY SINE Alu -15 296 1 1872 240 81 52 chr21 7784988 7785546 -27122024 + L1ME1 LINE L1 5689 6230 -5 1539 139 79 60 chr21 7787077 7787445 -27120125 - THE1C LTR MaLR 0 375 1 356 324 66 7 chr21 7787655 7787791 -27119779 + MLT1H1 LTR MaLR 24 167 -388 518 250 50 38 chr21 7787914 7788074 -27119496 + MLT1G3 LTR MaLR 369 530 0 3209 121 26 12 chr21 7789042 7789546 -27118024 + MER9 LTR ERVK 1 511 0 21 36 0 0 chr21 7790248 7790276 -27117294 + AT_rich Low_complexity Low_complexity 1 28 0 268 334 45 19 chr21 7790310 7790535 -27117035 + MLT1G LTR MaLR 62 290 -259 441 0 0 0 chr21 7790559 7790608 -27116962 + (GA)n Simple_repeat Simple_repeat 2 50 0 454 244 64 26 chr21 7790642 7790798 -27116772 + MLT1G LTR MaLR 419 580 -10 1327 206 150 3 chr21 7791005 7791345 -27116225 + MLT1B LTR MaLR 1 390 0 226 299 0 0 chr21 7791521 7791608 -27115962 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 255 79 0 0 chr21 7791610 7791648 -27115922 + (TG)n Simple_repeat Simple_repeat 1 38 0 2012 115 0 43 chr21 7792187 7792492 -27115078 + AluSq SINE Alu 1 292 -21 22 80 0 0 chr21 7793082 7793132 -27114438 + AT_rich Low_complexity Low_complexity 1 50 0 201 122 49 0 chr21 7793944 7793985 -27113585 + (TTA)n Simple_repeat Simple_repeat 2 44 0 235 205 27 18 chr21 7794260 7794372 -27113198 + (TA)n Simple_repeat Simple_repeat 2 114 0 201 184 18 35 chr21 7794394 7794508 -27113062 + (TA)n Simple_repeat Simple_repeat 1 112 0 2331 142 13 8 chr21 7794510 7794883 -27112687 - THE1C LTR MaLR 0 375 1 8888 142 59 7 chr21 7794883 7796384 -27111186 - THE1C-int LTR MaLR 0 1580 1 1948 161 13 3 chr21 7796427 7796732 -27110838 + AluSx SINE Alu 3 310 -2 1927 143 90 18 chr21 7796756 7797091 -27110479 - THE1B LTR MaLR 0 364 6 11070 112 4 3 chr21 7797096 7798673 -27108897 - THE1B-int LTR MaLR -1 1579 1 1902 121 81 29 chr21 7798673 7799019 -27108551 - THE1B LTR MaLR 0 364 1 2322 133 0 0 chr21 7799019 7799350 -27108220 - THE1C LTR MaLR -44 331 1 2401 75 0 0 chr21 7800723 7801018 -27106552 + AluY SINE Alu 1 295 -16 35 0 0 0 chr21 7801018 7801053 -27106517 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr21 7802234 7802262 -27105308 + AT_rich Low_complexity Low_complexity 1 28 0 1770 182 0 3 chr21 7803105 7803396 -27104174 + AluJb SINE Alu 1 290 -22 24 67 0 0 chr21 7803449 7803494 -27104076 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr21 7803975 7803999 -27103571 + AT_rich Low_complexity Low_complexity 1 24 0 257 51 26 0 chr21 7804559 7804598 -27102972 + (TG)n Simple_repeat Simple_repeat 2 41 0 1352 199 49 120 chr21 7806097 7806705 -27100865 - MER34B LTR ERV1 0 565 1 405 0 0 0 chr21 7807263 7807308 -27100262 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr21 7807865 7807900 -27099670 + AT_rich Low_complexity Low_complexity 1 35 0 484 238 12 62 chr21 7808781 7809015 -27098555 + MER58 DNA MER1_type 1 2420 0 1143 228 8 12 chr21 7809233 7809483 -27098087 - MLT1D LTR MaLR -4 501 253 794 215 56 53 chr21 7809510 7809794 -27097776 - MLT1D LTR MaLR -220 285 1 2702 151 40 17 chr21 7810022 7810565 -27097005 + LTR38 LTR ERV1 1 556 0 560 291 64 30 chr21 7811040 7811301 -27096269 + L1ME LINE L1 560 836 -5560 259 312 53 53 chr21 7811425 7811726 -27095844 + L1ME LINE L1 779 1079 -5330 5011 116 128 33 chr21 7811808 7813194 -27094376 + pTR5 LTR ERV1 742 2438 0 2093 230 77 2 chr21 7813669 7814108 -27093462 + MER70A LRE ERV 1 472 0 26 30 0 0 chr21 7815179 7815212 -27092358 + AT_rich Low_complexity Low_complexity 1 33 0 251 179 0 0 chr21 7815692 7815731 -27091839 + AluSp/q SINE Alu 228 266 -37 240 111 0 0 chr21 7815868 7815904 -27091666 + (A)n Simple_repeat Simple_repeat 1 36 0 40 73 0 0 chr21 7816516 7816598 -27090972 + AT_rich Low_complexity Low_complexity 1 82 0 540 207 6 77 chr21 7816712 7816835 -27090735 + L1MB8 LINE L1 6021 6130 -48 3288 164 2 22 chr21 7816835 7817372 -27090198 + MER1A DNA MER1_type 1 526 -1 540 207 6 77 chr21 7817372 7817417 -27090153 + L1MB8 LINE L1 6130 6177 -1 26 30 0 0 chr21 7817484 7817517 -27090053 + AT_rich Low_complexity Low_complexity 1 33 0 231 132 26 0 chr21 7817782 7817820 -27089750 - LTR33A LTR ERVL 0 523 485 1004 256 100 94 chr21 7817789 7818301 -27089269 - LTR41 LTR ERVL -6 767 253 521 335 21 46 chr21 7819046 7819330 -27088240 + LTR16A LTR ERVL 57 333 -117 2337 145 49 5 chr21 7819330 7819738 -27087832 - MSTA LTR MaLR 0 428 3 192 152 0 0 chr21 7819874 7819907 -27087663 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr21 7820294 7820315 -27087255 + AT_rich Low_complexity Low_complexity 1 21 0 12512 232 37 29 chr21 7820630 7823228 -27084342 - L1MA4 LINE L1 -19 7302 4728 423 0 0 0 chr21 7823228 7823275 -27084295 + (TG)n Simple_repeat Simple_repeat 2 48 0 12512 232 37 29 chr21 7823275 7825755 -27081815 - L1MA4 LINE L1 -2593 4728 2110 189 0 0 0 chr21 7825755 7825776 -27081794 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 12512 232 37 29 chr21 7825776 7827596 -27079974 - L1MA4 LINE L1 -5211 2110 307 450 259 121 0 chr21 7827598 7827714 -27079856 - L1M2a LINE L1 -6467 701 572 4200 186 27 30 chr21 7827910 7828823 -27078747 + L1MC1 LINE L1 5406 6316 -17 1670 158 100 0 chr21 7829052 7829331 -27078239 + AluSx SINE Alu 1 307 -5 249 267 60 127 chr21 7829390 7829540 -27078030 + MIR3 SINE MIR 39 178 -30 729 162 7 7 chr21 7829841 7829983 -27077587 + L1MA10 LINE L1 6191 6332 -2 2221 112 0 3 chr21 7829991 7830287 -27077283 + AluSx SINE Alu 1 295 -17 3632 194 20 9 chr21 7832522 7833348 -27074222 + L1PA15 LINE L1 1534 2376 -4421 5301 190 8 7 chr21 7833354 7835001 -27072569 + L1PA15 LINE L1 4906 6553 -263 1399 179 0 8 chr21 7835168 7835425 -27072145 + L1PA15 LINE L1 6557 6811 -5 234 0 0 0 chr21 7837337 7837363 -27070207 + (GA)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr21 7838610 7838698 -27068872 + AT_rich Low_complexity Low_complexity 1 88 0 1582 190 7 23 chr21 7839010 7839315 -27068255 - AluJo SINE Alu -12 300 1 1944 188 11 0 chr21 7839435 7839796 -27067774 - MER47A DNA MER2_type 0 366 2 1898 249 69 27 chr21 7840011 7840574 -27066996 - MLT1E LTR MaLR 0 593 7 534 297 91 96 chr21 7842582 7842882 -27064688 - L2 LINE L2 -7 3306 3007 2288 113 0 0 chr21 7842882 7843191 -27064379 + AluSg SINE Alu 1 309 -1 534 297 91 96 chr21 7843191 7843307 -27064263 - L2 LINE L2 -306 3007 2892 1668 211 83 5 chr21 7843374 7843783 -27063787 + MSTB1 LTR MaLR 1 432 0 189 281 0 16 chr21 7843783 7843847 -27063723 - L2 LINE L2 -386 2886 2824 21 0 0 0 chr21 7844883 7844904 -27062666 + AT_rich Low_complexity Low_complexity 1 21 0 4585 157 48 62 chr21 7845196 7846215 -27061355 - L1MC1 LINE L1 0 6333 5329 726 270 13 17 chr21 7846217 7846450 -27061120 - L1MC1 LINE L1 -864 5282 5051 25 31 0 0 chr21 7846488 7846520 -27061050 + AT_rich Low_complexity Low_complexity 1 32 0 2032 119 0 3 chr21 7849734 7850019 -27057551 + AluSg SINE Alu 13 296 -14 818 266 16 4 chr21 7850446 7850698 -27056872 + L1MA9 LINE L1 6020 6274 -38 36 23 0 0 chr21 7851086 7851129 -27056441 + AT_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr21 7851197 7851228 -27056342 + AT_rich Low_complexity Low_complexity 1 31 0 294 29 0 0 chr21 7851486 7851521 -27056049 + (CA)n Simple_repeat Simple_repeat 2 36 0 2449 43 0 0 chr21 7851550 7851855 -27055715 + AluY SINE Alu 1 305 0 22 56 0 0 chr21 7852063 7852099 -27055471 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr21 7852159 7852182 -27055388 + AT_rich Low_complexity Low_complexity 1 23 0 22 94 0 0 chr21 7852415 7852479 -27055091 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr21 7852652 7852684 -27054886 + AT_rich Low_complexity Low_complexity 1 32 0 244 217 0 14 chr21 7852986 7853055 -27054515 + A-rich Low_complexity Low_complexity 2 69 0 315 214 0 0 chr21 7853140 7853210 -27054360 + (TA)n Simple_repeat Simple_repeat 1 70 0 196 286 75 53 chr21 7853661 7853794 -27053776 - MIR3 SINE MIR -65 143 8 1545 179 81 17 chr21 7853801 7854160 -27053410 + MLT1B LTR MaLR 1 423 -5 4024 47 0 6 chr21 7854236 7854745 -27052825 - L1PA5 LINE L1 -5 6149 5644 1890 59 0 0 chr21 7855344 7855581 -27051989 - L1PA5 LINE L1 -2 6152 5916 28 48 0 0 chr21 7857152 7857194 -27050376 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr21 7857461 7857504 -27050066 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr21 7858014 7858038 -27049532 + AT_rich Low_complexity Low_complexity 1 24 0 1924 121 28 0 chr21 7858275 7858565 -27049005 + L1PA11 LINE L1 5877 6174 0 854 245 98 26 chr21 7858574 7858880 -27048690 + LTR50 LTR ERVL 3 330 -465 256 231 46 0 chr21 7859115 7859180 -27048390 + LTR50 LTR ERVL 728 795 0 245 299 109 40 chr21 7859464 7859638 -27047932 + L2 LINE L2 3128 3313 0 682 141 118 24 chr21 7859680 7859850 -27047720 + MER53 DNA DNA 4 189 0 1596 148 48 9 chr21 7860537 7861078 -27046492 - LTR24C LTR ERV1 0 635 1 831 239 34 90 chr21 7861192 7861400 -27046170 - L2 LINE L2 -858 2456 2275 2353 134 16 6 chr21 7861400 7861765 -27045805 + MER83C LTR ERV1 1 369 -4 831 239 34 90 chr21 7861765 7861911 -27045659 - L2 LINE L2 -1039 2275 2122 2357 85 0 0 chr21 7861919 7862212 -27045358 - AluY SINE Alu -18 293 1 1782 238 75 35 chr21 7862261 7862355 -27045215 + MER21B LTR ERV1 1 90 -773 225 23 23 45 chr21 7862355 7862399 -27045171 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1782 238 75 35 chr21 7862399 7862784 -27044786 + MER21B LTR ERV1 90 499 -364 854 192 5 55 chr21 7862785 7862807 -27044763 - L1MD3 LINE L1 -201 7794 7772 3985 84 55 9 chr21 7862807 7863388 -27044182 + LTR14B LTR ERVK 1 608 0 854 192 5 55 chr21 7863388 7863584 -27043986 - L1MD3 LINE L1 -223 7772 7587 849 195 113 6 chr21 7863655 7863854 -27043716 + LTR49 LTR ERV1 3 213 -382 993 162 11 47 chr21 7863854 7864045 -27043525 - THE1B LTR MaLR 0 364 181 348 158 59 50 chr21 7864093 7864194 -27043376 - LTR48 LTR ERV1 -56 731 630 1196 190 47 43 chr21 7864207 7864486 -27043084 - AluJo SINE Alu -10 302 23 1078 165 53 138 chr21 7864511 7864887 -27042683 - LTR49 LTR ERV1 -251 344 1 770 240 63 45 chr21 7864890 7865111 -27042459 + MER21A LTR ERV1 621 845 -86 1472 195 75 21 chr21 7865218 7865362 -27042208 - LTR49 LTR ERV1 -241 354 219 2309 133 8 22 chr21 7865362 7865731 -27041839 + THE1B LTR MaLR 1 364 0 1472 195 75 21 chr21 7865731 7865920 -27041650 - LTR49 LTR ERV1 -376 219 3 939 195 35 22 chr21 7865964 7866262 -27041308 + L1MC3 LINE L1 7375 7808 -154 1840 179 27 42 chr21 7866287 7866689 -27040881 + MER57A LTR ERV1 8 403 0 198 0 0 0 chr21 7867568 7867590 -27039980 + (TC)n Simple_repeat Simple_repeat 1 22 0 288 0 0 0 chr21 7867589 7867621 -27039949 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr21 7868549 7868573 -27038997 + AT_rich Low_complexity Low_complexity 1 24 0 461 61 0 15 chr21 7869488 7869554 -27038016 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 2232 192 72 82 chr21 7869839 7870533 -27037037 + LTR8 LTR ERV1 4 690 -1 25 0 0 0 chr21 7870756 7870781 -27036789 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr21 7871659 7871686 -27035884 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 30 0 0 chr21 7873760 7873793 -27033777 + AT_rich Low_complexity Low_complexity 1 33 0 2976 119 26 2 chr21 7874030 7874484 -27033086 - MER4C LTR ERV1 0 465 1 503 244 99 74 chr21 7874546 7874881 -27032689 - LTR48B LTR ERV1 -13 774 449 2399 108 5 24 chr21 7874881 7875252 -27032318 - THE1B LTR MaLR 0 364 1 503 244 99 74 chr21 7875252 7875361 -27032209 - LTR48B LTR ERV1 -338 449 122 1603 228 82 41 chr21 7875520 7876011 -27031559 - MER67D LTR ERV1 -2 512 2 1997 137 0 0 chr21 7876570 7876876 -27030694 - AluSx SINE Alu 0 306 1 1881 266 28 19 chr21 7876879 7877582 -27029988 - L1MEc LINE L1 -3327 2888 2179 1067 236 51 42 chr21 7877582 7877895 -27029675 - L1MEc LINE L1 -4178 2218 1903 876 266 81 26 chr21 7878096 7878655 -27028915 - L1MEc LINE L1 -4836 1310 832 639 292 29 12 chr21 7879063 7879306 -27028264 - L1MEc LINE L1 -6090 306 60 517 271 0 71 chr21 7879627 7879688 -27027882 + MIR SINE MIR 72 136 -126 2416 56 0 3 chr21 7879688 7879994 -27027576 - AluY SINE Alu -6 305 1 517 271 0 71 chr21 7879994 7880102 -27027468 + MIR SINE MIR 136 229 -33 27 0 0 0 chr21 7881334 7881361 -27026209 + AT_rich Low_complexity Low_complexity 1 27 0 1400 184 36 53 chr21 7881722 7882026 -27025544 - AluJo SINE Alu -1 301 3 362 226 39 20 chr21 7882067 7882169 -27025401 + L1ME1 LINE L1 6060 6163 -3 201 108 0 0 chr21 7882200 7882237 -27025333 + (CAT)n Simple_repeat Simple_repeat 1 37 0 186 43 0 0 chr21 7882421 7882444 -27025126 + (CA)n Simple_repeat Simple_repeat 2 24 0 521 305 49 25 chr21 7882688 7882891 -27024679 + MIR SINE MIR 1 208 -54 256 271 0 0 chr21 7884399 7884458 -27023112 + MIR3 SINE MIR 120 178 -30 1009 325 29 16 chr21 7885016 7885401 -27022169 + REP3 LTR ERV 1 390 -172 22 35 0 0 chr21 7885446 7885475 -27022095 + AT_rich Low_complexity Low_complexity 1 29 0 1442 239 35 21 chr21 7885743 7886120 -27021450 - MER70A LTR ERVL -14 458 77 257 192 45 13 chr21 7886120 7886354 -27021216 + (TA)n Simple_repeat Simple_repeat 1 241 0 1755 190 81 0 chr21 7886572 7886904 -27020666 + MLT1A1 LTR MaLR 7 365 0 1354 311 42 24 chr21 7886948 7886998 -27020572 + L1MEc LINE L1 204 252 -6144 1877 175 67 3 chr21 7886998 7887370 -27020200 - MSTD LTR MaLR 0 396 1 1354 311 42 24 chr21 7887370 7887872 -27019698 + L1MEc LINE L1 252 766 -5630 25 31 0 0 chr21 7888374 7888406 -27019164 + AT_rich Low_complexity Low_complexity 1 32 0 1497 275 58 52 chr21 7888542 7889312 -27018258 + L1ME1 LINE L1 5295 6069 -97 409 217 12 0 chr21 7890237 7890320 -27017250 - MIR SINE MIR -78 184 101 2625 180 25 65 chr21 7890384 7890798 -27016772 - MER6A DNA MER2_type -260 605 223 414 0 0 0 chr21 7890798 7890844 -27016726 + (CA)n Simple_repeat Simple_repeat 1 46 0 2625 180 25 65 chr21 7890844 7891057 -27016513 - MER6A DNA MER2_type -642 223 3 2318 54 0 35 chr21 7892488 7892803 -27014767 - AluY SINE Alu -7 304 1 464 282 30 0 chr21 7893049 7893180 -27014390 + MIR3 SINE MIR 69 203 -5 213 196 0 0 chr21 7896264 7896310 -27011260 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 239 0 30 chr21 7896705 7896772 -27010798 - L2 LINE L2 -4 3309 3245 1339 197 47 3 chr21 7897111 7897431 -27010139 - Ricksha DNA DNA -7 3247 2914 2114 118 0 16 chr21 7897433 7897748 -27009822 + AluSq SINE Alu 1 310 -3 207 119 95 0 chr21 7897748 7897790 -27009780 + GA-rich Low_complexity Low_complexity 1 46 0 5854 175 28 6 chr21 7897790 7897826 -27009744 - Ricksha DNA DNA -313 2933 2899 204 67 0 0 chr21 7897826 7897856 -27009714 + (TA)n Simple_repeat Simple_repeat 1 30 0 5854 175 28 6 chr21 7897856 7898909 -27008661 - Ricksha DNA DNA -347 2899 1821 1464 174 7 62 chr21 7898907 7899211 -27008359 - Ricksha DNA DNA -2957 289 3 365 287 105 53 chr21 7899217 7899597 -27007973 - L1M4 LINE L1 -3097 3049 2650 21 36 0 0 chr21 7901385 7901413 -27006157 + AT_rich Low_complexity Low_complexity 1 28 0 562 319 45 24 chr21 7902128 7902420 -27005150 + ERVL LTR ERVL 2071 2368 -3396 4787 214 64 26 chr21 7902482 7902625 -27004945 - L1MC1 LINE L1 -25 6588 6452 1516 175 38 24 chr21 7902625 7902916 -27004654 + AluJo SINE Alu 2 296 -16 4787 214 64 26 chr21 7902916 7904654 -27002916 - L1MC1 LINE L1 -161 6452 4639 1850 258 25 40 chr21 7904687 7904869 -27002701 - L1MC1 LINE L1 -1865 4561 4378 2274 105 0 0 chr21 7904869 7905174 -27002396 + AluY SINE Alu 1 305 -6 1850 258 25 40 chr21 7905174 7905639 -27001931 - L1MC1 LINE L1 -2048 4378 3924 591 251 44 4 chr21 7905733 7905960 -27001610 - L1MC1 LINE L1 -2872 3554 3319 1570 180 27 88 chr21 7905967 7906511 -27001059 + MLT2A2 LTR ERVL 27 554 0 2875 229 31 25 chr21 7906516 7907443 -27000127 - L1MC1 LINE L1 -3106 3320 2384 2126 113 0 3 chr21 7907443 7907735 -26999835 - AluSg SINE Alu -19 291 1 2875 229 31 25 chr21 7907735 7907887 -26999683 - L1MC1 LINE L1 -4042 2384 2234 1008 318 43 10 chr21 7907931 7908346 -26999224 + L2 LINE L2 1924 2352 -962 2569 185 111 32 chr21 7908379 7909001 -26998569 + LTR51 LTR ERV1 1 671 0 2236 99 0 0 chr21 7910091 7910393 -26997177 - AluSg SINE Alu -8 302 1 618 173 30 81 chr21 7910893 7911090 -26996480 + MER53 DNA DNA 2 188 -1 22 35 0 0 chr21 7913448 7913477 -26994093 + AT_rich Low_complexity Low_complexity 1 29 0 1874 160 0 0 chr21 7913715 7914062 -26993508 + AluSx SINE Alu 1 347 0 1688 217 17 8 chr21 7914314 7914674 -26992896 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chr21 7914911 7914934 -26992636 + AT_rich Low_complexity Low_complexity 1 23 0 1226 184 0 8 chr21 7915605 7915866 -26991704 + L1MA4 LINE L1 6038 6296 -4 308 24 24 0 chr21 7916280 7916321 -26991249 + (TG)n Simple_repeat Simple_repeat 1 42 0 356 279 36 0 chr21 7916335 7916446 -26991124 - Charlie7 DNA MER1_type -556 2056 1942 21 71 0 0 chr21 7917228 7917270 -26990300 + AT_rich Low_complexity Low_complexity 1 42 0 2184 120 0 0 chr21 7917279 7917579 -26989991 + AluSq SINE Alu 1 300 -13 696 163 0 31 chr21 7917581 7917710 -26989860 - L1PB4 LINE L1 -17 6139 6015 22 88 0 0 chr21 7918044 7918101 -26989469 + AT_rich Low_complexity Low_complexity 1 57 0 1862 155 0 3 chr21 7918221 7918517 -26989053 - AluSx SINE Alu -17 295 1 27 29 0 0 chr21 7918735 7918769 -26988801 + AT_rich Low_complexity Low_complexity 1 34 0 1933 147 16 3 chr21 7918868 7919182 -26988388 - MER57A LTR ERV1 -85 318 1 1648 138 24 0 chr21 7919182 7919435 -26988135 - MER57A-int LTR ERV1 0 7537 7279 693 126 31 31 chr21 7919435 7919562 -26988008 - LTR54B LTR ERV1 -367 131 5 15543 154 21 40 chr21 7919563 7921111 -26986459 - MER57A-int LTR ERV1 -389 7148 5571 1865 128 4 0 chr21 7921111 7921384 -26986186 + AluSc SINE Alu 1 274 -35 15543 154 21 40 chr21 7921384 7923305 -26984265 - MER57A-int LTR ERV1 -1966 5571 1709 300 267 19 19 chr21 7923739 7923844 -26983726 - MER57A-int LTR ERV1 -3724 1399 1295 4516 168 16 34 chr21 7924456 7925312 -26982258 - MER57A-int LTR ERV1 -6696 841 1 2218 161 20 5 chr21 7925312 7925709 -26981861 - MER57A LTR ERV1 0 403 1 607 218 86 37 chr21 7925726 7925969 -26981601 - MER69 DNA AcHobo -82 2444 2190 680 286 58 62 chr21 7926467 7926915 -26980655 - MER57A LTR ERV1 0 556 138 227 179 0 0 chr21 7927046 7927085 -26980485 - MLT2C1 LTR ERVL 0 397 359 26 0 0 0 chr21 7927085 7927111 -26980459 + AT_rich Low_complexity Low_complexity 1 26 0 22 94 0 0 chr21 7927167 7927231 -26980339 + AT_rich Low_complexity Low_complexity 1 64 0 275 269 25 8 chr21 7927284 7927403 -26980167 + (TA)n Simple_repeat Simple_repeat 2 122 0 1591 196 51 0 chr21 7927407 7927723 -26979847 - MLT2C1 LTR ERVL -57 340 9 547 241 18 0 chr21 7929298 7929450 -26978120 + L1MB5 LINE L1 5835 5995 -189 390 204 28 0 chr21 7929453 7929553 -26978017 + L1MB7 LINE L1 5877 5985 -189 24 0 0 0 chr21 7929818 7929842 -26977728 + AT_rich Low_complexity Low_complexity 1 24 0 1459 174 36 60 chr21 7930872 7931256 -26976314 + THE1C LTR MaLR 1 375 0 2064 134 0 0 chr21 7931287 7931579 -26975991 - AluSg SINE Alu -3 307 16 22 0 0 0 chr21 7932640 7932662 -26974908 + AT_rich Low_complexity Low_complexity 1 22 0 243 250 33 0 chr21 7932692 7932752 -26974818 - L1ME3 LINE L1 -24 6138 6077 22 80 0 0 chr21 7932906 7932956 -26974614 + AT_rich Low_complexity Low_complexity 1 50 0 184 68 23 45 chr21 7933064 7933108 -26974462 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 358 348 57 0 chr21 7934477 7934635 -26972935 + L2 LINE L2 2980 3146 -167 1430 181 10 111 chr21 7934866 7935270 -26972300 + MLT1A1 LTR MaLR 1 363 -2 315 336 8 8 chr21 7938960 7939079 -26968491 + MLT1E2 LTR MaLR 213 331 -295 1803 225 131 31 chr21 7940071 7940590 -26966980 + MLT1E2 LTR MaLR 52 622 -4 2009 143 0 0 chr21 7940922 7941216 -26966354 + AluSx SINE Alu 1 294 -18 328 307 24 24 chr21 7941353 7941480 -26966090 + MLT1H LTR MaLR 136 262 -287 31 0 0 0 chr21 7941733 7941764 -26965806 + AT_rich Low_complexity Low_complexity 1 31 0 2114 183 10 0 chr21 7941794 7942192 -26965378 + MER57A LTR ERV1 2 403 0 21 89 0 0 chr21 7942919 7942975 -26964595 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr21 7943007 7943036 -26964534 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 7943256 7943285 -26964285 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 7943525 7943548 -26964022 + AT_rich Low_complexity Low_complexity 1 23 0 1204 183 87 68 chr21 7943754 7944121 -26963449 - MLT1A2 LTR MaLR 0 374 1 21 89 0 0 chr21 7944499 7944555 -26963015 + AT_rich Low_complexity Low_complexity 1 56 0 1719 150 36 65 chr21 7945896 7946210 -26961360 + THE1C LTR MaLR 1 304 -71 2272 102 0 19 chr21 7946210 7946524 -26961046 + AluY SINE Alu 1 308 -3 1719 150 36 65 chr21 7946524 7946595 -26960975 + THE1C LTR MaLR 304 375 0 9218 148 30 18 chr21 7946595 7948141 -26959429 + THE1C-int LTR MaLR 15 1579 -1 1764 170 52 25 chr21 7948141 7948506 -26959064 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 7948843 7948864 -26958706 + AT_rich Low_complexity Low_complexity 1 21 0 342 138 0 0 chr21 7949044 7949102 -26958468 + (TG)n Simple_repeat Simple_repeat 1 58 0 1175 244 106 42 chr21 7949285 7949770 -26957800 - MLT1E2 LTR MaLR -81 573 7 360 0 0 0 chr21 7950454 7950494 -26957076 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2002 142 0 0 chr21 7950497 7950779 -26956791 - AluSq SINE Alu -31 282 1 1534 246 55 10 chr21 7950910 7951313 -26956257 + L1PB1 LINE L1 14 434 -7131 7953 198 24 10 chr21 7951311 7953767 -26953803 + L1PB1 LINE L1 4722 7210 -360 276 213 0 0 chr21 7953767 7953828 -26953742 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 2404 121 11 3 chr21 7953828 7954201 -26953369 + L1PB1 LINE L1 7195 7570 0 1161 169 42 4 chr21 7954287 7954639 -26952931 + L1M1 LINE L1 5101 5462 -743 1378 126 35 0 chr21 7954642 7954872 -26952698 + L1MA2 LINE L1 6056 6293 -11 21 57 0 0 chr21 7955221 7955256 -26952314 + AT_rich Low_complexity Low_complexity 1 35 0 254 304 20 0 chr21 7955428 7955530 -26952040 + (TATATG)n Simple_repeat Simple_repeat 3 106 0 21 0 0 0 chr21 7955783 7955804 -26951766 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr21 7957508 7957540 -26950030 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 7957746 7957785 -26949785 + AT_rich Low_complexity Low_complexity 1 39 0 53 57 0 0 chr21 7957984 7958072 -26949498 + AT_rich Low_complexity Low_complexity 1 88 0 351 119 0 0 chr21 7958429 7958496 -26949074 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1323 232 0 7 chr21 7958496 7958780 -26948790 - AluJo SINE Alu -25 287 6 572 246 98 61 chr21 7959086 7959147 -26948423 - MLT1E LTR MaLR 0 593 536 2050 32 4 0 chr21 7959147 7959397 -26948173 - L1PA7 LINE L1 -18 6136 5886 572 246 98 61 chr21 7959397 7959599 -26947971 - MLT1E LTR MaLR -57 536 320 328 326 28 67 chr21 7959694 7959872 -26947698 - MLT1E LTR MaLR -362 180 10 2255 134 11 6 chr21 7960694 7961045 -26946525 + THE1C LTR MaLR 3 355 -20 2406 63 0 3 chr21 7961099 7961402 -26946168 - AluY SINE Alu -9 302 1 288 277 64 21 chr21 7961758 7961899 -26945671 - L1ME4a LINE L1 0 6121 5975 360 206 37 37 chr21 7962236 7962343 -26945227 - MLT1E2 LTR MaLR -1 625 519 258 271 0 0 chr21 7962556 7962615 -26944955 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 30 89 0 0 chr21 7962930 7963009 -26944561 + AT_rich Low_complexity Low_complexity 1 79 0 330 303 48 48 chr21 7963168 7963333 -26944237 - MIR3 SINE MIR -36 172 8 199 360 88 8 chr21 7963986 7964111 -26943459 - L2 LINE L2 -498 2816 2682 21 0 0 0 chr21 7964627 7964648 -26942922 + AT_rich Low_complexity Low_complexity 1 21 0 1095 225 26 1 chr21 7965594 7965863 -26941707 - MLT1D LTR MaLR -2 503 245 805 219 31 53 chr21 7965880 7966186 -26941384 + MLT2B1 LTR ERVL 79 479 -41 284 127 63 16 chr21 7966189 7966315 -26941255 + (TA)n Simple_repeat Simple_repeat 2 133 0 373 223 22 82 chr21 7966441 7966625 -26940945 - L1MC4 LINE L1 -131 7911 7739 453 339 70 31 chr21 7966643 7967027 -26940543 - L1M4c LINE L1 -4704 1680 1282 2451 54 0 0 chr21 7967897 7968192 -26939378 + AluY SINE Alu 6 300 -11 512 68 81 0 chr21 7968590 7968664 -26938906 - MADE1 DNA Mariner 0 80 1 22 35 0 0 chr21 7969187 7969216 -26938354 + AT_rich Low_complexity Low_complexity 1 29 0 2344 113 42 8 chr21 7970509 7970888 -26936682 + L1MA3 LINE L1 5914 6305 0 2251 109 0 3 chr21 7970986 7971290 -26936280 + AluSq SINE Alu 1 303 -10 27 0 0 0 chr21 7971650 7971677 -26935893 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr21 7972963 7972993 -26934577 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1963 135 3 10 chr21 7973224 7973561 -26934009 + AluSq SINE Alu 4 338 0 21 0 0 0 chr21 7974096 7974117 -26933453 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr21 7975536 7975583 -26931987 + AT_rich Low_complexity Low_complexity 1 47 0 858 298 12 4 chr21 7975716 7975974 -26931596 + MLT1E1 LTR MaLR 3 262 -392 432 319 19 6 chr21 7976020 7976177 -26931393 + MLT1E1 LTR MaLR 313 471 -153 663 250 32 6 chr21 7976326 7976482 -26931088 + MLT1E1 LTR MaLR 495 654 0 250 224 0 66 chr21 7977195 7977271 -26930299 + L1MB1 LINE L1 5981 6051 -117 2895 225 64 28 chr21 7977576 7978465 -26929105 - L1M4c LINE L1 -1959 4251 3331 313 146 0 0 chr21 7978468 7978516 -26929054 - L1M4c LINE L1 -3451 2759 2712 3025 119 12 8 chr21 7978513 7979528 -26928042 + L1PBa LINE L1 2307 3369 -3493 1904 260 56 42 chr21 7979743 7980634 -26926936 - L1M4c LINE L1 -4523 1608 800 1634 209 38 51 chr21 7980637 7981010 -26926560 + Tigger4(Zombi) DNA MER2_type 2 369 -2362 4899 190 34 40 chr21 7981011 7982089 -26925481 + Tigger4(Zombi) DNA MER2_type 1660 2731 0 543 281 44 10 chr21 7982089 7982292 -26925278 - L1M4c LINE L1 -5007 1134 925 760 350 31 19 chr21 7982930 7983290 -26924280 - L1M4c LINE L1 -5524 607 244 1189 218 23 33 chr21 7983536 7983874 -26923696 + MER89 LTR ERV1 3 471 -88 3070 219 53 21 chr21 7983998 7984802 -26922768 + L1MB3 LINE L1 5320 6149 -34 9432 158 43 7 chr21 7986516 7988812 -26918758 - Tigger1 DNA MER2_type 0 2418 2 56 29 0 0 chr21 7989144 7989214 -26918356 + AT_rich Low_complexity Low_complexity 1 70 0 2797 152 9 9 chr21 7989791 7990258 -26917312 + L1 LINE L1 3830 4296 -1850 2006 98 0 7 chr21 7991369 7991669 -26915901 - AluSg SINE Alu 0 311 14 5545 34 0 0 chr21 7991914 7992571 -26914999 + L1PA5 LINE L1 5494 6150 -4 46 78 0 0 chr21 7993231 7993333 -26914237 + AT_rich Low_complexity Low_complexity 1 102 0 952 198 65 11 chr21 7994513 7994776 -26912794 - L1MC3 LINE L1 -30 7755 7479 984 219 34 34 chr21 7994803 7995036 -26912534 - L1MC3 LINE L1 -400 7385 7153 2016 197 27 47 chr21 7995061 7995549 -26912021 - L1MC3 LINE L1 -756 7029 6552 2142 64 74 3 chr21 7995560 7995857 -26911713 - LTR17 LTR ERV1 0 780 463 1289 180 44 11 chr21 7995857 7997387 -26910183 - L1P3 LINE L1 -3278 3183 1561 689 109 10 0 chr21 7997395 7997496 -26910074 + LTR9B LTR ERV1 1 102 -542 1772 196 9 18 chr21 7997500 7997842 -26909728 + HUERS-P3b LTR ERV1 157 495 -6923 11622 123 14 17 chr21 7997965 7999723 -26907847 + HUERS-P3b LTR ERV1 891 2642 -4776 2378 186 29 5 chr21 7999723 8000143 -26907427 - LTR8 LTR ERV1 -250 441 12 1932 138 19 6 chr21 8000145 8000321 -26907249 + HUERS-P3b LTR ERV1 3064 3247 -4171 2448 44 0 3 chr21 8000321 8000614 -26906956 - AluY SINE Alu -6 305 14 1932 138 19 6 chr21 8000614 8000756 -26906814 + HUERS-P3b LTR ERV1 3247 3386 -4032 2070 150 3 0 chr21 8000727 8001041 -26906529 + HUERS-P3 LTR ERV1 8601 8915 -4 4278 109 9 8 chr21 8001045 8001687 -26905883 + LTR9B LTR ERV1 2 644 0 3593 207 27 18 chr21 8001687 8003271 -26904299 - L1P3 LINE L1 -4734 1141 1 947 189 38 77 chr21 8003279 8003728 -26903842 - L1MCa LINE L1 -4508 2056 1537 556 253 59 59 chr21 8003740 8003961 -26903609 - L1MCa LINE L1 -5001 1563 1343 459 213 28 28 chr21 8004001 8004109 -26903461 - FLAM_A SINE Alu -17 125 18 238 148 0 37 chr21 8004115 8004169 -26903401 - L1MCa LINE L1 -5364 1200 1149 1889 257 75 52 chr21 8004168 8004845 -26902725 - L1MCa LINE L1 -5346 699 7 250 260 28 72 chr21 8005710 8005891 -26901679 - L1ME LINE L1 -239 5882 5710 1980 88 46 7 chr21 8006343 8006627 -26900943 - AluY SINE Alu -16 295 1 207 0 0 0 chr21 8007604 8007627 -26899943 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 75 0 0 chr21 8007809 8007862 -26899708 + AT_rich Low_complexity Low_complexity 1 53 0 786 295 44 49 chr21 8007862 8008473 -26899097 - L1MC5 LINE L1 -449 7512 6905 563 279 21 7 chr21 8008521 8008661 -26898909 - L1MC5 LINE L1 -1087 6874 6733 240 59 0 0 chr21 8011266 8011300 -26896270 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1613 252 49 34 chr21 8011402 8011937 -26895633 - LTR55 LTR ERV -5 543 1 2097 144 19 25 chr21 8012526 8012888 -26894682 + THE1B LTR MaLR 1 360 -4 24 0 0 0 chr21 8013208 8013232 -26894338 + AT_rich Low_complexity Low_complexity 1 24 0 201 266 46 12 chr21 8014939 8015112 -26892458 + (TA)n Simple_repeat Simple_repeat 1 179 0 1393 201 88 31 chr21 8015259 8015613 -26891957 - MLT1A2 LTR MaLR 0 374 1 825 365 47 8 chr21 8016275 8016782 -26890788 - HERV16 LTR ERVL -2233 3531 3005 407 367 40 14 chr21 8016838 8017116 -26890454 - HERV16 LTR ERVL -2097 2899 2615 24 0 0 0 chr21 8017647 8017671 -26889899 + AT_rich Low_complexity Low_complexity 1 24 0 1908 154 26 32 chr21 8018144 8018521 -26889049 - THE1C LTR MaLR 0 375 1 2193 107 0 31 chr21 8019521 8019840 -26887730 - AluSq SINE Alu -4 309 1 260 314 65 48 chr21 8020290 8020580 -26886990 - HERV16 LTR ERVL -4340 656 362 314 45 23 0 chr21 8022013 8022057 -26885513 + (CA)n Simple_repeat Simple_repeat 2 46 0 1371 163 68 31 chr21 8022132 8022426 -26885144 - THE1C LTR MaLR -70 305 1 2115 166 38 20 chr21 8022431 8022828 -26884742 + MSTB1 LTR MaLR 28 431 -1 415 239 57 0 chr21 8023784 8023872 -26883698 - Tigger7 DNA MER2_type 0 2487 2395 1639 190 36 33 chr21 8023872 8024204 -26883366 - Tigger7 DNA MER2_type -212 521 189 2042 146 54 14 chr21 8024973 8025323 -26882247 + THE1B LTR MaLR 1 364 0 11201 111 3 0 chr21 8025324 8026898 -26880672 + THE1B-int LTR MaLR 2 1580 0 2233 126 54 14 chr21 8026898 8027248 -26880322 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr21 8028309 8028337 -26879233 + AT_rich Low_complexity Low_complexity 1 28 0 397 294 56 48 chr21 8028343 8028595 -26878975 + L2 LINE L2 2151 2404 -910 273 333 93 52 chr21 8028873 8029182 -26878388 + L2 LINE L2 2743 3066 -247 22 56 0 0 chr21 8029247 8029283 -26878287 + AT_rich Low_complexity Low_complexity 1 36 0 783 325 89 24 chr21 8029771 8030319 -26877251 + L2 LINE L2 2708 3293 -20 225 184 20 20 chr21 8030682 8030731 -26876839 + MLT1E1 LTR MaLR 1 49 -605 27 49 0 0 chr21 8032399 8032440 -26875130 + AT_rich Low_complexity Low_complexity 1 41 0 2768 233 32 12 chr21 8032980 8033823 -26873747 + L1MD2 LINE L1 5135 5997 -362 674 243 45 69 chr21 8033831 8034115 -26873455 + L1MC3 LINE L1 6038 7743 -42 213 65 0 0 chr21 8034838 8034869 -26872701 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2000 141 0 0 chr21 8034873 8035170 -26872400 + AluSx SINE Alu 1 297 -15 31 58 0 0 chr21 8036045 8036097 -26871473 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 8036459 8036497 -26871073 + AT_rich Low_complexity Low_complexity 1 38 0 1376 172 52 49 chr21 8039051 8039478 -26868092 - MLT2B2 LTR ERVL -35 480 6 7709 159 57 9 chr21 8040366 8040434 -26867136 - Tigger1 DNA MER2_type -916 1502 1439 1998 140 0 7 chr21 8040434 8040741 -26866829 + AluSx SINE Alu 3 307 -5 7709 159 57 9 chr21 8040741 8041924 -26865646 - Tigger1 DNA MER2_type -979 1439 174 222 37 0 0 chr21 8041924 8041951 -26865619 + (TAA)n Simple_repeat Simple_repeat 3 29 0 7709 159 57 9 chr21 8041951 8042101 -26865469 - Tigger1 DNA MER2_type -2244 174 33 200 250 10 40 chr21 8042268 8042368 -26865202 + T-rich Low_complexity Low_complexity 2 98 0 1459 201 3 39 chr21 8042442 8042750 -26864820 + AluJo SINE Alu 3 299 -13 22 56 0 0 chr21 8043451 8043487 -26864083 + AT_rich Low_complexity Low_complexity 1 36 0 23 86 0 0 chr21 8043629 8043687 -26863883 + AT_rich Low_complexity Low_complexity 1 58 0 1629 181 7 3 chr21 8046463 8046761 -26860809 - AluJo SINE Alu -13 299 1 21 0 0 0 chr21 8046971 8046992 -26860578 + AT_rich Low_complexity Low_complexity 1 21 0 193 54 0 54 chr21 8047010 8047047 -26860523 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 8047614 8047635 -26859935 + AT_rich Low_complexity Low_complexity 1 21 0 1495 120 0 21 chr21 8047790 8048023 -26859547 - AluSg/x SINE Alu -6 304 77 29 70 0 0 chr21 8048569 8048626 -26858944 + AT_rich Low_complexity Low_complexity 1 57 0 2209 110 0 0 chr21 8050099 8050399 -26857171 - AluSx SINE Alu -12 300 1 329 117 17 0 chr21 8050497 8050557 -26857013 + (TA)n Simple_repeat Simple_repeat 2 62 0 186 43 0 0 chr21 8050878 8050901 -26856669 + (TA)n Simple_repeat Simple_repeat 2 24 0 14070 43 8 0 chr21 8050901 8053399 -26854171 - L1PA5 LINE L1 -5 6149 3628 1455 156 22 0 chr21 8053929 8054160 -26853410 - MER4A LTR ERV1 0 664 429 510 133 89 0 chr21 8054300 8054390 -26853180 - MER4A LTR ERV1 -566 98 1 21 57 0 0 chr21 8054442 8054477 -26853093 + AT_rich Low_complexity Low_complexity 1 35 0 238 83 0 0 chr21 8054503 8054539 -26853031 + tRNA-Cys-TGC tRNA tRNA 1 36 -39 855 241 86 34 chr21 8054566 8054976 -26852594 + MLT1C LTR MaLR 1 452 -15 234 86 0 0 chr21 8055195 8055209 -26852361 + (CAT)n Simple_repeat Simple_repeat 2 15 -21 3372 96 15 0 chr21 8055209 8055688 -26851882 - LTR19A LTR ERV1 0 486 1 234 86 0 0 chr21 8055688 8055708 -26851862 + (CAT)n Simple_repeat Simple_repeat 14 36 0 369 0 0 0 chr21 8055758 8055799 -26851771 + (TG)n Simple_repeat Simple_repeat 2 42 0 219 325 0 12 chr21 8057163 8057246 -26850324 - MIR SINE MIR 0 262 181 23 0 0 0 chr21 8057632 8057655 -26849915 + AT_rich Low_complexity Low_complexity 1 23 0 266 250 0 0 chr21 8058288 8058352 -26849218 + A-rich Low_complexity Low_complexity 1 64 0 308 255 0 29 chr21 8058385 8058487 -26849083 + A-rich Low_complexity Low_complexity 2 100 0 22 80 0 0 chr21 8058994 8059044 -26848526 + AT_rich Low_complexity Low_complexity 1 50 0 183 156 0 0 chr21 8059337 8059369 -26848201 + GA-rich Low_complexity Low_complexity 3 34 0 7636 25 2 1 chr21 8059753 8060672 -26846898 - L1P LINE L1 -925 5221 4302 6976 31 1 0 chr21 8060672 8061116 -26846454 + L1PA3 LINE L1 5323 6152 -3 3150 39 3 0 chr21 8061116 8061499 -26846071 + L1PA3 LINE L1 5769 6152 -3 23 33 0 0 chr21 8061499 8061529 -26846041 + AT_rich Low_complexity Low_complexity 1 30 0 694 286 76 44 chr21 8062060 8062565 -26845005 + L1MC/D LINE L1 5002 5518 -760 1001 242 68 32 chr21 8063120 8063500 -26844070 + L1MC4a LINE L1 6198 6591 -1217 1189 239 25 48 chr21 8063511 8063951 -26843619 + L1MC4 LINE L1 6825 7254 -788 352 239 85 0 chr21 8064027 8064157 -26843413 + L1MC4 LINE L1 7902 8042 0 407 333 59 14 chr21 8064532 8064754 -26842816 + MIR SINE MIR 29 260 -2 22 35 0 0 chr21 8065436 8065465 -26842105 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr21 8065738 8065784 -26841786 + AT_rich Low_complexity Low_complexity 1 46 0 621 246 0 0 chr21 8067091 8067217 -26840353 + MER7A DNA MER2_type 2 125 -221 5914 148 48 50 chr21 8067416 8068405 -26839165 + Tigger3b DNA MER2_type 1 988 -2040 1865 102 34 4 chr21 8068405 8068671 -26838899 - AluSq SINE Alu -35 278 5 5914 148 48 50 chr21 8068671 8068915 -26838655 + Tigger3b DNA MER2_type 988 1231 0 371 323 50 50 chr21 8069401 8069602 -26837968 + L2 LINE L2 2861 3061 -211 22 0 0 0 chr21 8069680 8069702 -26837868 + AT_rich Low_complexity Low_complexity 1 22 0 489 283 52 36 chr21 8070047 8070298 -26837272 + L1MC/D LINE L1 2202 2456 -3690 472 231 57 24 chr21 8070326 8070538 -26837032 + L1MC/D LINE L1 2511 2729 -3417 610 259 76 58 chr21 8070541 8070885 -26836685 + L1MC/D LINE L1 2713 3062 -3084 294 298 67 26 chr21 8070924 8071266 -26836304 + L1MC/D LINE L1 3117 3472 -2674 432 253 41 53 chr21 8071333 8071503 -26836067 + L1MC/D LINE L1 3560 3727 -2419 293 303 101 54 chr21 8071520 8071831 -26835739 + L1MC/D LINE L1 3713 4055 -2091 2187 107 0 16 chr21 8071831 8072141 -26835429 + AluSp SINE Alu 1 305 -8 293 303 101 54 chr21 8072141 8072294 -26835276 + L1MC/D LINE L1 4055 4199 -1947 1620 215 13 32 chr21 8072316 8072688 -26834882 - MLT1A1 LTR MaLR 0 365 1 419 279 68 7 chr21 8072707 8072854 -26834716 + L1MC/D LINE L1 4249 4404 -1742 1009 221 14 0 chr21 8072863 8073076 -26834494 + L1MC/D LINE L1 5471 5686 -647 689 197 8 18 chr21 8073097 8073244 -26834326 - MSTC LTR MaLR -296 161 3 376 272 64 8 chr21 8073253 8073378 -26834192 + L1ME LINE L1 5589 5720 -442 1931 116 0 8 chr21 8073899 8074199 -26833371 + AluSc SINE Alu 16 313 0 278 50 25 0 chr21 8077182 8077222 -26830348 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 174 0 22 chr21 8079627 8079673 -26827897 + (TA)n Simple_repeat Simple_repeat 2 46 0 477 90 0 0 chr21 8079988 8080055 -26827515 + (TG)n Simple_repeat Simple_repeat 2 68 0 1492 200 54 11 chr21 8080063 8080413 -26827157 - MLT1A1 LTR MaLR 0 365 1 207 267 0 0 chr21 8080464 8080509 -26827061 + (CA)n Simple_repeat Simple_repeat 2 46 0 1546 129 8 0 chr21 8080554 8080802 -26826768 - L1PA13 LINE L1 -4 6159 5910 1781 223 8 6 chr21 8080835 8081194 -26826376 - MLT2D LTR ERVL -52 362 3 2434 73 0 0 chr21 8081553 8081855 -26825715 - AluY SINE Alu -8 303 2 1554 170 61 45 chr21 8081999 8082358 -26825212 + MLT1A1 LTR MaLR 1 365 0 193 51 51 26 chr21 8082428 8082467 -26825103 + (TTATA)n Simple_repeat Simple_repeat 1 40 0 202 211 0 0 chr21 8083185 8083223 -26824347 + GA-rich Low_complexity Low_complexity 1 38 0 1264 118 86 16 chr21 8084801 8085046 -26822524 - L1MA8 LINE L1 -4 6287 6026 40 37 0 0 chr21 8085047 8085101 -26822469 + AT_rich Low_complexity Low_complexity 1 54 0 367 141 16 0 chr21 8085102 8085166 -26822404 - L1PA16 LINE L1 -3 6163 6099 4397 178 41 13 chr21 8085168 8085903 -26821667 - L1PA16 LINE L1 -105 6061 5291 189 0 0 0 chr21 8085903 8085924 -26821646 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 4397 178 41 13 chr21 8085924 8086350 -26821220 - L1PA16 LINE L1 -875 5291 4879 261 341 46 32 chr21 8087027 8087244 -26820326 - HAL1 LINE L1 -609 1898 1679 23 0 0 0 chr21 8087436 8087459 -26820111 + AT_rich Low_complexity Low_complexity 1 23 0 36 53 0 0 chr21 8087538 8087595 -26819975 + AT_rich Low_complexity Low_complexity 1 57 0 1920 108 3 14 chr21 8087837 8088154 -26819416 + AluSq SINE Alu 1 314 0 214 336 0 8 chr21 8090548 8090670 -26816900 + (CCA)n Simple_repeat Simple_repeat 1 121 0 248 0 31 0 chr21 8090845 8090877 -26816693 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 258 116 0 0 chr21 8090977 8091020 -26816550 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 266 47 0 chr21 8091058 8091122 -26816448 - L2 LINE L2 -32 3281 3215 314 290 0 50 chr21 8091236 8091248 -26816322 - L1MC4 LINE L1 -1334 6708 6697 2022 135 0 0 chr21 8091248 8091537 -26816033 + AluSx SINE Alu 1 289 -23 314 290 0 50 chr21 8091537 8091624 -26815946 - L1MC4 LINE L1 -1345 6697 6614 317 250 0 62 chr21 8091544 8091640 -26815930 + L1MC4 LINE L1 6614 6703 -1339 245 133 0 0 chr21 8091654 8091699 -26815871 - LTR66 LTR ERVL -393 217 173 241 113 0 0 chr21 8091728 8091781 -26815789 - LTR66 LTR ERVL -393 217 165 22 35 0 0 chr21 8093177 8093206 -26814364 + AT_rich Low_complexity Low_complexity 1 29 0 384 77 0 0 chr21 8093480 8093532 -26814038 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 61 0 0 chr21 8094795 8094828 -26812742 + (TG)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr21 8095516 8095540 -26812030 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 262 283 123 9 chr21 8095781 8095887 -26811683 - L2 LINE L2 -19 3253 3136 1128 266 25 6 chr21 8096973 8097342 -26810228 + MSTD LTR MaLR 1 396 0 3462 71 6 40 chr21 8097697 8098168 -26809402 - L1PA7 LINE L1 -7 6147 5661 1885 114 0 0 chr21 8098168 8098423 -26809147 - AluY SINE Alu -13 298 44 3462 71 6 40 chr21 8098423 8099032 -26808538 - L1PA7 LINE L1 -493 5661 4890 4080 139 22 74 chr21 8100111 8100939 -26806631 + LTR1 LTR ERV1 1 785 0 1905 130 75 23 chr21 8101232 8101578 -26805992 - THE1B LTR MaLR 0 364 1 11617 88 4 10 chr21 8101579 8103167 -26804403 - THE1B-int LTR MaLR -1 1579 1 2070 135 48 22 chr21 8103167 8103522 -26804048 - THE1B LTR MaLR 0 364 1 1949 185 11 21 chr21 8104250 8104623 -26802947 + MSTB1 LTR MaLR 1 369 -63 193 29 59 0 chr21 8105560 8105594 -26801976 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 0 chr21 8105594 8105619 -26801951 + AT_rich Low_complexity Low_complexity 1 25 0 1481 239 11 16 chr21 8105646 8106010 -26801560 - MLT1A1 LTR MaLR 0 365 4 2219 91 0 9 chr21 8107306 8107624 -26799946 - L1PA6 LINE L1 0 6154 5840 2114 47 0 0 chr21 8107624 8107879 -26799691 + L1P2 LINE L1 5407 5661 -493 25 31 0 0 chr21 8107990 8108022 -26799548 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 8108856 8108879 -26798691 + AT_rich Low_complexity Low_complexity 1 23 0 2310 87 0 3 chr21 8109220 8109532 -26798038 - AluY SINE Alu 0 311 1 25 0 0 0 chr21 8112505 8112530 -26795040 + AT_rich Low_complexity Low_complexity 1 25 0 227 306 135 9 chr21 8112653 8112764 -26794806 + MLT1I LTR MaLR 81 205 -204 338 221 29 0 chr21 8113443 8113511 -26794059 + MER76 LTR ERV 1 70 -618 1615 242 100 53 chr21 8113590 8113821 -26793749 + MER76 LTR ERV 63 282 -406 1792 123 27 10 chr21 8113821 8114121 -26793449 - AluSx SINE Alu -7 305 1 1615 242 100 53 chr21 8114121 8114487 -26793083 + MER76 LTR ERV 282 688 0 837 332 44 32 chr21 8114605 8115169 -26792401 - HERVL LTR ERVL -2728 2926 2356 1870 137 0 17 chr21 8117718 8118011 -26789559 - AluSx SINE Alu -15 297 10 295 332 46 36 chr21 8118209 8118405 -26789165 + MER63A DNA MER1_type 1 198 -12 1710 81 13 0 chr21 8118848 8119082 -26788488 - L1PA8 LINE L1 -9 6163 5927 419 345 5 15 chr21 8119360 8119557 -26788013 - MIR SINE MIR -31 231 37 226 206 59 0 chr21 8120008 8120076 -26787494 - L1M4b LINE L1 -5210 1649 1578 225 65 0 0 chr21 8120170 8120201 -26787369 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1510 154 56 8 chr21 8120204 8120471 -26787099 - AluSx SINE Alu -32 280 1 291 54 0 0 chr21 8120745 8120782 -26786788 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 279 330 10 0 chr21 8121223 8121320 -26786250 - MER69 DNA AcHobo -2419 107 10 34 24 0 0 chr21 8121962 8122003 -26785567 + AT_rich Low_complexity Low_complexity 1 41 0 282 115 0 0 chr21 8122587 8122639 -26784931 + (GA)n Simple_repeat Simple_repeat 1 52 0 1120 95 0 0 chr21 8123161 8123308 -26784262 - AluY SINE Alu -164 147 1 218 19 58 58 chr21 8123322 8123374 -26784196 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 1013 130 6 0 chr21 8123713 8123874 -26783696 - AluSg/x SINE Alu -3 307 146 766 306 80 34 chr21 8124460 8124875 -26782695 + L2 LINE L2 2876 3309 -4 23 86 0 0 chr21 8126446 8126504 -26781066 + AT_rich Low_complexity Low_complexity 1 58 0 263 289 123 9 chr21 8127139 8127253 -26780317 - MIR SINE MIR -57 205 79 25 51 0 0 chr21 8127458 8127497 -26780073 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr21 8128374 8128402 -26779168 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 8129006 8129050 -26778520 + AT_rich Low_complexity Low_complexity 1 44 0 26125 55 6 2 chr21 8130966 8135090 -26772480 + L1PA5 LINE L1 2012 6153 -1 1969 177 83 5 chr21 8137196 8137591 -26769979 + MSTA LTR MaLR 1 426 -2 27 49 0 0 chr21 8138037 8138078 -26769492 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr21 8138285 8138309 -26769261 + AT_rich Low_complexity Low_complexity 1 24 0 309 109 0 0 chr21 8139436 8139482 -26768088 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr21 8139509 8139561 -26768009 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr21 8140044 8140077 -26767493 + AT_rich Low_complexity Low_complexity 1 33 0 256 136 51 0 chr21 8140095 8140154 -26767416 + (CATA)n Simple_repeat Simple_repeat 1 62 0 42 0 0 0 chr21 8141150 8141192 -26766378 + AT_rich Low_complexity Low_complexity 1 42 0 2496 182 14 41 chr21 8142098 8142354 -26765216 - MER70B LTR ERVL -103 475 237 1898 83 29 40 chr21 8142354 8142630 -26764940 - AluSx SINE Alu -19 293 21 2496 182 14 41 chr21 8142630 8142861 -26764709 - MER70B LTR ERVL -341 237 1 204 216 0 0 chr21 8143357 8143408 -26764162 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1558 85 0 5 chr21 8143995 8144196 -26763374 + AluY SINE Alu 1 200 -111 1731 178 88 19 chr21 8144998 8145520 -26762050 - MLT2A2 LTR ERVL 0 554 1 446 326 71 41 chr21 8146669 8147037 -26760533 + ERVL LTR ERVL 4087 4465 -1299 222 203 72 0 chr21 8148647 8148716 -26758854 + A-rich Low_complexity Low_complexity 3 76 0 30 27 0 0 chr21 8149757 8149794 -26757776 + AT_rich Low_complexity Low_complexity 1 37 0 384 179 0 12 chr21 8149809 8149893 -26757677 - L1PB4 LINE L1 0 6156 6074 271 248 9 19 chr21 8150300 8150405 -26757165 + (TA)n Simple_repeat Simple_repeat 2 105 0 1622 249 83 78 chr21 8151426 8151930 -26755640 - MLT1E1 LTR MaLR -1 653 144 1366 233 50 11 chr21 8151930 8152290 -26755280 - MLT1A2 LTR MaLR 0 374 1 1622 249 83 78 chr21 8152290 8152423 -26755147 - MLT1E1 LTR MaLR -510 144 13 225 295 16 33 chr21 8152512 8152634 -26754936 + GA-rich Low_complexity Low_complexity 4 123 0 205 241 8 45 chr21 8152915 8153048 -26754522 + CT-rich Low_complexity Low_complexity 3 130 0 854 283 62 4 chr21 8153532 8153808 -26753762 + MLT1C LTR MaLR 7 298 -169 1073 86 0 0 chr21 8154973 8155113 -26752457 - AluSg/x SINE Alu -17 293 154 516 146 0 0 chr21 8155116 8155198 -26752372 - AluY SINE Alu -236 82 1 11742 175 43 26 chr21 8156262 8158691 -26748879 + L1M4c LINE L1 18 2487 -3897 1305 203 103 11 chr21 8158689 8159049 -26748521 + L1MB3 LINE L1 5783 6175 -8 32 0 0 0 chr21 8160298 8160330 -26747240 + AT_rich Low_complexity Low_complexity 1 32 0 519 335 35 22 chr21 8160970 8161200 -26746370 + MIR SINE MIR 12 244 -18 2360 62 0 20 chr21 8161792 8162098 -26745472 + AluY SINE Alu 1 300 -11 477 198 0 0 chr21 8162101 8162202 -26745368 + GA-rich Low_complexity Low_complexity 2 102 0 235 143 0 0 chr21 8162212 8162247 -26745323 + MLT1I LTR MaLR 100 134 -275 285 208 10 69 chr21 8162714 8162815 -26744755 - MLT1K LTR MaLR -2 586 492 592 263 20 0 chr21 8162961 8163113 -26744457 - MIR SINE MIR -1 261 107 210 208 0 0 chr21 8163131 8163184 -26744386 + (TA)n Simple_repeat Simple_repeat 1 53 0 24 32 0 0 chr21 8163933 8163964 -26743606 + AT_rich Low_complexity Low_complexity 1 31 0 537 285 201 44 chr21 8164034 8164378 -26743192 + L2 LINE L2 2913 3310 -3 262 253 51 13 chr21 8164740 8164819 -26742751 - MIR SINE MIR -73 189 108 2554 37 0 34 chr21 8164897 8165218 -26742352 - AluY SINE Alu 0 311 2 258 148 0 0 chr21 8167489 8167543 -26740027 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 71 0 0 chr21 8167854 8167896 -26739674 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr21 8168329 8168353 -26739217 + AT_rich Low_complexity Low_complexity 1 24 0 887 85 0 8 chr21 8169785 8169914 -26737656 + L1MA4 LINE L1 6162 6289 -11 22 35 0 0 chr21 8171011 8171040 -26736530 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 8171294 8171329 -26736241 + AT_rich Low_complexity Low_complexity 1 35 0 200 203 17 34 chr21 8171350 8171409 -26736161 + (ATTG)n Simple_repeat Simple_repeat 4 61 0 3990 195 44 29 chr21 8171444 8172906 -26734664 - MER52A LTR ERV1 0 1755 3 1562 132 38 7 chr21 8172908 8173386 -26734184 - MER52A-int LTR ERV1 0 7091 6563 1038 217 97 8 chr21 8173373 8173654 -26733916 - MER52-int LTR ERV1 -3818 3273 2942 559 128 0 0 chr21 8173654 8173747 -26733823 + MLT2A2 LTR ERVL 1 93 -360 1095 150 0 0 chr21 8173747 8173907 -26733663 - THE1B LTR MaLR 0 364 205 1748 180 0 58 chr21 8173904 8174248 -26733322 - MER52A LTR ERV1 -1008 747 424 584 244 6 65 chr21 8174239 8174407 -26733163 - MER52A LTR ERV1 -1581 174 17 1333 196 18 97 chr21 8174512 8174905 -26732665 + MLT1A1 LTR MaLR 4 365 0 1933 241 50 63 chr21 8174969 8175240 -26732330 - MER76 LTR ERV -78 610 337 2229 118 0 0 chr21 8175240 8175544 -26732026 + AluSx SINE Alu 1 304 -8 1933 241 50 63 chr21 8175544 8175890 -26731680 - MER76 LTR ERV -351 337 1 225 0 0 0 chr21 8175950 8175975 -26731595 + (A)n Simple_repeat Simple_repeat 1 25 0 28 86 0 0 chr21 8176446 8176516 -26731054 + AT_rich Low_complexity Low_complexity 1 70 0 24 77 0 0 chr21 8177894 8177946 -26729624 + AT_rich Low_complexity Low_complexity 1 52 0 23 86 0 0 chr21 8178200 8178258 -26729312 + AT_rich Low_complexity Low_complexity 1 58 0 201 229 0 0 chr21 8179084 8179119 -26728451 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr21 8179424 8179452 -26728118 + AT_rich Low_complexity Low_complexity 1 28 0 2214 90 7 10 chr21 8180285 8180586 -26726984 - AluSc SINE Alu -9 300 1 245 333 56 41 chr21 8180649 8180844 -26726726 + L1MC/D LINE L1 5528 5725 -2083 602 293 27 31 chr21 8181550 8181772 -26725798 - MIR SINE MIR -10 252 32 34 24 0 0 chr21 8181778 8181819 -26725751 + AT_rich Low_complexity Low_complexity 1 41 0 2165 181 28 32 chr21 8182088 8182524 -26725046 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr21 8182613 8182635 -26724935 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr21 8184732 8184779 -26722791 + AT_rich Low_complexity Low_complexity 1 47 0 354 98 0 0 chr21 8185365 8185416 -26722154 + (TG)n Simple_repeat Simple_repeat 2 52 0 189 246 0 0 chr21 8185770 8185835 -26721735 + (CA)n Simple_repeat Simple_repeat 2 66 0 228 35 0 0 chr21 8186643 8186672 -26720898 + (TC)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chr21 8186671 8186694 -26720876 + (CA)n Simple_repeat Simple_repeat 1 23 0 982 200 121 6 chr21 8187034 8187389 -26720181 + Charlie1b DNA MER1_type 70 465 -58 221 359 66 0 chr21 8187871 8187977 -26719593 + L2 LINE L2 2256 2368 -946 559 246 107 26 chr21 8188024 8188395 -26719175 + L1MB7 LINE L1 852 1244 -5140 1605 244 29 59 chr21 8188410 8189087 -26718483 + L1MB7 LINE L1 2282 2939 -3443 1509 250 65 13 chr21 8189083 8189680 -26717890 + L1MB7 LINE L1 2785 3412 -2970 1020 152 0 0 chr21 8189695 8189874 -26717696 + AluSg/x SINE Alu 133 311 0 699 264 20 23 chr21 8189885 8190184 -26717386 + L1MB7 LINE L1 3413 3710 -2672 3287 223 46 24 chr21 8190208 8190249 -26717321 + L1MB7 LINE L1 3773 3812 -2608 2207 100 0 3 chr21 8190249 8190550 -26717020 + AluY SINE Alu 1 300 -11 3287 223 46 24 chr21 8190550 8190812 -26716758 + L1MB7 LINE L1 3812 4067 -2353 207 114 0 0 chr21 8190812 8190847 -26716723 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3287 223 46 24 chr21 8190847 8191128 -26716442 + L1MB7 LINE L1 4067 4340 -2080 315 0 0 0 chr21 8191128 8191163 -26716407 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3287 223 46 24 chr21 8191163 8191947 -26715623 + L1MB7 LINE L1 4340 5105 -1315 2086 117 0 3 chr21 8191947 8192237 -26715333 + AluSc SINE Alu 1 289 -20 3287 223 46 24 chr21 8192237 8192867 -26714703 + L1MB7 LINE L1 5105 5719 -701 1847 103 136 30 chr21 8192867 8193206 -26714364 - THE1C LTR MaLR 0 375 1 3287 223 46 24 chr21 8193206 8193677 -26713893 + L1MB7 LINE L1 5719 6406 -14 4690 169 42 4 chr21 8195001 8196531 -26711039 + L1PA16 LINE L1 4488 6068 -98 2267 65 0 3 chr21 8197680 8197997 -26709573 - AluY SINE Alu 0 311 1 38 96 0 0 chr21 8198694 8198809 -26708761 + AT_rich Low_complexity Low_complexity 1 115 0 22 56 0 0 chr21 8199596 8199632 -26707938 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr21 8200146 8200170 -26707400 + AT_rich Low_complexity Low_complexity 1 24 0 220 204 0 0 chr21 8201615 8201659 -26705911 + (CAA)n Simple_repeat Simple_repeat 2 45 0 518 272 39 28 chr21 8202183 8202363 -26705207 - MLT1H LTR MaLR -335 214 33 293 93 19 0 chr21 8202736 8202790 -26704780 + (TG)n Simple_repeat Simple_repeat 1 55 0 5613 100 27 28 chr21 8202885 8203247 -26704323 + L1PA13 LINE L1 5111 5472 -691 2162 102 3 0 chr21 8203247 8203531 -26704039 - AluY SINE Alu -26 285 1 5613 100 27 28 chr21 8203531 8204211 -26703359 + L1PA13 LINE L1 5472 6152 -11 2105 107 0 19 chr21 8205056 8205366 -26702204 + AluSg SINE Alu 1 304 -6 1348 236 36 16 chr21 8205640 8205971 -26701599 + MLT1A1 LTR MaLR 22 624 -2 28 29 0 0 chr21 8206277 8206312 -26701258 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr21 8206423 8206446 -26701124 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr21 8207034 8207075 -26700495 + AT_rich Low_complexity Low_complexity 1 41 0 1262 56 26 67 chr21 8208632 8208732 -26698838 - L1PA13 LINE L1 -2 6161 6071 1809 128 35 98 chr21 8208732 8209132 -26698438 + THE1C LTR MaLR 1 375 0 1262 56 26 67 chr21 8209132 8209226 -26698344 - L1PA13 LINE L1 -92 6071 5975 1960 126 0 3 chr21 8209226 8209512 -26698058 - AluSg SINE Alu -6 304 20 1718 166 130 38 chr21 8209937 8210162 -26697408 + MSTA LTR MaLR 1 204 -224 2335 61 3 0 chr21 8210162 8210459 -26697111 + AluY SINE Alu 2 299 -12 1718 166 130 38 chr21 8210459 8210625 -26696945 + MSTA LTR MaLR 204 428 0 22 0 0 0 chr21 8211148 8211170 -26696400 + AT_rich Low_complexity Low_complexity 1 22 0 301 318 23 8 chr21 8211223 8211352 -26696218 - L1MCa LINE L1 -4501 1925 1795 1129 36 0 0 chr21 8211486 8211624 -26695946 - L1PA5 LINE L1 0 6154 6017 2775 209 11 68 chr21 8212258 8213023 -26694547 - L1MA7 LINE L1 -1 6290 5570 1925 182 39 13 chr21 8213292 8213681 -26693889 - MSTB LTR MaLR 0 426 28 1713 165 140 16 chr21 8214206 8214570 -26693000 + MSTA LTR MaLR 1 409 -19 1259 280 96 39 chr21 8215263 8215702 -26691868 - MLT1E LTR MaLR -129 464 1 27 29 0 0 chr21 8215962 8215996 -26691574 + AT_rich Low_complexity Low_complexity 1 34 0 298 350 12 55 chr21 8216855 8217018 -26690552 + L2 LINE L2 3125 3280 -33 513 141 7 42 chr21 8217123 8217265 -26690305 + CT-rich Low_complexity Low_complexity 2 138 0 252 0 0 0 chr21 8217263 8217291 -26690279 + (TC)n Simple_repeat Simple_repeat 1 28 0 1351 148 109 42 chr21 8217292 8217576 -26689994 - AluJb SINE Alu -9 303 1 222 91 0 0 chr21 8218040 8218073 -26689497 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 609 373 26 22 chr21 8218165 8218476 -26689094 + L1M2 LINE L1 1 312 -6537 6619 76 56 0 chr21 8219658 8221044 -26686526 - L1PA7 LINE L1 0 6154 4728 6626 82 5 16 chr21 8221044 8221982 -26685588 + L1PA7 LINE L1 3792 4719 -1427 3003 262 42 20 chr21 8221983 8223084 -26684486 - L1M4 LINE L1 -956 5190 4066 301 288 0 0 chr21 8223242 8223322 -26684248 - MIR SINE MIR 0 262 183 27 49 0 0 chr21 8223948 8223989 -26683581 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr21 8224022 8224058 -26683512 + AT_rich Low_complexity Low_complexity 1 36 0 48 67 0 0 chr21 8225268 8225358 -26682212 + AT_rich Low_complexity Low_complexity 1 90 0 2095 132 3 3 chr21 8225369 8225679 -26681891 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr21 8225701 8225730 -26681840 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 8226778 8226799 -26680771 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr21 8227135 8227185 -26680385 + AT_rich Low_complexity Low_complexity 1 50 0 346 238 89 20 chr21 8228049 8228150 -26679420 - L1ME LINE L1 -460 5661 5554 2023 201 30 59 chr21 8228150 8228642 -26678928 - MER66B LTR ERV1 0 486 9 9057 162 32 32 chr21 8228725 8229484 -26678086 - Ricksha DNA DNA -8 3238 2480 1465 179 0 39 chr21 8229484 8229769 -26677801 + AluJo SINE Alu 14 287 -25 9057 162 32 32 chr21 8229769 8230791 -26676779 - Ricksha DNA DNA -765 2481 1457 2004 89 0 11 chr21 8230793 8231062 -26676508 + AluSx SINE Alu 3 268 -44 234 0 0 0 chr21 8231074 8231100 -26676470 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 892 106 15 0 chr21 8231137 8231269 -26676301 - L1PA13 LINE L1 -261 5902 5769 1390 114 27 0 chr21 8231269 8231488 -26676082 + L1PA13 LINE L1 5939 6163 0 1458 196 7 0 chr21 8231513 8231788 -26675782 + AluJb SINE Alu 12 288 -24 3475 151 19 3 chr21 8231789 8232377 -26675193 - Ricksha DNA DNA -1814 1432 836 316 296 88 0 chr21 8232376 8232501 -26675069 - MLT2D LTR ERVL -112 441 306 2415 197 166 10 chr21 8232396 8232979 -26674591 - Ricksha DNA DNA -2534 712 39 649 276 67 30 chr21 8236043 8236340 -26671230 - L1MC4 LINE L1 -970 7072 6765 1789 269 36 18 chr21 8237551 8238225 -26669345 + L1MC1 LINE L1 4312 4997 -1149 4484 165 37 9 chr21 8238256 8239104 -26668466 + L1MC1 LINE L1 5463 6333 0 326 205 60 0 chr21 8240057 8240140 -26667430 - LTR49 LTR ERV1 0 595 508 356 239 92 0 chr21 8240121 8240230 -26667340 - LTR48 LTR ERV1 -189 598 480 563 202 97 1 chr21 8240223 8240469 -26667101 - LTR48B LTR ERV1 -308 336 48 1443 229 31 11 chr21 8240558 8240916 -26666654 - MLT1A1 LTR MaLR 0 365 1 785 278 54 57 chr21 8241041 8241466 -26666104 + MLT2C2 LTR ERVL 1 424 -40 23 33 0 0 chr21 8241490 8241520 -26666050 + AT_rich Low_complexity Low_complexity 1 30 0 241 176 9 37 chr21 8241521 8241629 -26665941 + (TA)n Simple_repeat Simple_repeat 2 106 0 22 0 0 0 chr21 8241825 8241847 -26665723 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr21 8242095 8242129 -26665441 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr21 8243753 8243783 -26663787 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 8244560 8244582 -26662988 + AT_rich Low_complexity Low_complexity 1 22 0 408 190 140 20 chr21 8245730 8245939 -26661631 + FLAM_C SINE Alu 32 252 0 839 169 0 0 chr21 8245943 8246079 -26661491 + FRAM SINE Alu 24 159 -17 2322 62 0 0 chr21 8246955 8247247 -26660323 - AluY SINE Alu -19 292 1 553 329 48 0 chr21 8249712 8249919 -26657651 + L2 LINE L2 2724 2940 -374 465 208 24 83 chr21 8250078 8250246 -26657324 + L2 LINE L2 3153 3310 -3 333 299 0 0 chr21 8250844 8250931 -26656639 + L1MC4 LINE L1 6614 6700 -1342 278 132 53 0 chr21 8252230 8252306 -26655264 + (TA)n Simple_repeat Simple_repeat 1 80 0 330 343 84 6 chr21 8254360 8254526 -26653044 + MLT1J LTR MaLR 20 198 -313 990 98 6 12 chr21 8255870 8256034 -26651536 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1407 291 40 30 chr21 8257052 8257358 -26650212 - MLT1C-int LTR MaLR -771 600 284 1969 120 0 10 chr21 8257358 8257658 -26649912 - AluSc SINE Alu -10 299 3 1407 291 40 30 chr21 8257658 8257943 -26649627 - MLT1C-int LTR MaLR -1087 284 3 192 40 0 0 chr21 8258934 8258959 -26648611 + (TG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr21 8259255 8259276 -26648294 + AT_rich Low_complexity Low_complexity 1 21 0 544 339 62 7 chr21 8259378 8259652 -26647918 + MLT1J1 LTR MaLR 15 303 -143 185 61 30 0 chr21 8259718 8259732 -26647838 + (CAAAAA)n Simple_repeat Simple_repeat 2 14 -21 2505 41 0 16 chr21 8259732 8260048 -26647522 + AluY SINE Alu 1 311 0 185 61 30 0 chr21 8260048 8260066 -26647504 + (CAAAAA)n Simple_repeat Simple_repeat 14 35 0 22 70 0 0 chr21 8261544 8261587 -26645983 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr21 8261628 8261653 -26645917 + AT_rich Low_complexity Low_complexity 1 25 0 32 56 0 14 chr21 8261816 8261855 -26645715 + AT_rich Low_complexity Low_complexity 1 40 -30 6107 179 20 1 chr21 8261855 8261922 -26645648 - L1PA11 LINE L1 -2 6172 6108 1905 109 52 80 chr21 8261922 8262308 -26645262 - THE1C LTR MaLR 0 375 1 6107 179 20 1 chr21 8262308 8264240 -26643330 - L1PA11 LINE L1 -66 6108 4182 32 56 0 14 chr21 8264240 8264271 -26643299 + AT_rich Low_complexity Low_complexity 40 70 0 207 0 0 0 chr21 8264274 8264297 -26643273 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1490 58 0 11 chr21 8264297 8264487 -26643083 - L1PA3 LINE L1 -6 6149 5962 4732 144 19 5 chr21 8264495 8265147 -26642423 - L1PA11 LINE L1 -1982 4164 3498 207 0 0 0 chr21 8265147 8265170 -26642400 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4732 144 19 5 chr21 8265170 8265300 -26642270 - L1PA11 LINE L1 -2648 3498 3371 2440 212 2 0 chr21 8265300 8265743 -26641827 - MLT1C LTR MaLR -15 452 9 24 0 0 0 chr21 8267286 8267310 -26640260 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr21 8267310 8267333 -26640237 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr21 8268431 8268480 -26639090 + AT_rich Low_complexity Low_complexity 1 49 0 331 240 87 27 chr21 8268857 8269007 -26638563 + MLT1J LTR MaLR 1 159 -352 3452 130 32 2 chr21 8270792 8271354 -26636216 - L1PA10 LINE L1 -1169 4977 4399 5644 111 34 12 chr21 8271358 8272528 -26635042 + L1PA10 LINE L1 4979 6167 -1 680 211 36 12 chr21 8273115 8273246 -26634324 - L1M2 LINE L1 -492 5808 5669 2100 114 4 0 chr21 8273246 8273572 -26633998 - AluSq SINE Alu 0 328 2 680 211 36 12 chr21 8273572 8273626 -26633944 - L1M2 LINE L1 -631 5669 5618 253 89 0 0 chr21 8273692 8273737 -26633833 + LTR66 LTR ERVL 166 210 -400 355 252 7 7 chr21 8273739 8273894 -26633676 + (TA)n Simple_repeat Simple_repeat 1 155 0 22 35 0 0 chr21 8273894 8273923 -26633647 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 8274060 8274081 -26633489 + AT_rich Low_complexity Low_complexity 1 21 0 7936 188 49 27 chr21 8274147 8277044 -26630526 - L1MA6 LINE L1 0 6504 3556 14491 25 1 0 chr21 8277072 8279552 -26628018 - L1PA4 LINE L1 -3 6152 3671 4663 26 0 0 chr21 8279552 8280118 -26627452 + L1PA4 LINE L1 3095 3660 -2486 1454 233 55 6 chr21 8280197 8280690 -26626880 - L1MA6 LINE L1 -2908 3442 2926 1851 252 19 9 chr21 8280714 8281222 -26626348 - L1MA6 LINE L1 -3405 2945 2455 696 221 28 0 chr21 8281285 8281430 -26626140 - FAM SINE Alu -23 162 14 2685 278 64 49 chr21 8281442 8282000 -26625570 - L1MA6 LINE L1 -3959 2391 1843 213 39 0 0 chr21 8282000 8282026 -26625544 + (TG)n Simple_repeat Simple_repeat 1 26 0 2685 278 64 49 chr21 8282026 8283479 -26624091 - L1MA6 LINE L1 -4507 1843 588 1125 301 24 34 chr21 8283982 8284391 -26623179 - L1MA6 LINE L1 -5872 409 5 27 0 0 0 chr21 8284441 8284468 -26623102 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 8284502 8284523 -26623047 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 8284845 8284866 -26622704 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr21 8284915 8284958 -26622612 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 8284985 8285007 -26622563 + AT_rich Low_complexity Low_complexity 1 22 0 362 258 57 7 chr21 8285789 8285973 -26621597 - L1ME LINE L1 -661 5501 5300 2281 186 33 22 chr21 8285975 8286431 -26621139 + MLT1C LTR MaLR 1 461 -6 573 281 65 12 chr21 8286444 8286690 -26620880 - L1ME LINE L1 -852 5294 5036 1072 312 98 32 chr21 8286691 8287555 -26620015 - L1ME LINE L1 -1116 5030 4107 251 265 92 0 chr21 8288001 8288099 -26619471 + MIR SINE MIR 153 259 -3 459 52 0 0 chr21 8288656 8288714 -26618856 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 2055 138 0 3 chr21 8288720 8289031 -26618539 - AluSx SINE Alu -2 310 1 1542 84 5 0 chr21 8289168 8289370 -26618200 - AluSp SINE Alu -110 203 1 26 30 0 0 chr21 8289402 8289435 -26618135 + AT_rich Low_complexity Low_complexity 1 33 0 6065 112 11 34 chr21 8289443 8290331 -26617239 - L1MA3 LINE L1 0 6305 5441 1498 204 0 44 chr21 8290331 8290649 -26616921 - AluJb SINE Alu -8 304 1 6065 112 11 34 chr21 8290649 8290751 -26616819 - L1MA3 LINE L1 -864 5441 5338 1541 206 24 5 chr21 8290752 8291131 -26616439 + L1MA3 LINE L1 4948 5333 -813 326 313 23 0 chr21 8291656 8291787 -26615783 - L1ME LINE L1 -2215 3931 3798 853 269 61 22 chr21 8292012 8292461 -26615109 - MLT1E LTR MaLR 0 593 137 25 51 0 0 chr21 8292598 8292637 -26614933 + AT_rich Low_complexity Low_complexity 1 39 0 4736 208 30 17 chr21 8292841 8294360 -26613210 - L1MC1 LINE L1 -5 6328 4788 646 200 0 15 chr21 8294608 8294738 -26612832 + FLAM_C SINE Alu 4 131 -12 336 143 0 0 chr21 8294752 8294808 -26612762 + (A)n Simple_repeat Simple_repeat 1 56 0 21 36 0 0 chr21 8295718 8295746 -26611824 + AT_rich Low_complexity Low_complexity 1 28 0 1390 105 16 89 chr21 8296260 8296508 -26611062 + MER30 DNA MER1_type 1 230 0 535 343 64 39 chr21 8296744 8297152 -26610418 - LTR16B LTR ERVL -27 437 20 226 257 68 0 chr21 8299578 8299652 -26607918 + MLT1G1 LTR MaLR 8 86 -509 676 289 75 0 chr21 8299777 8299964 -26607606 + MLT1G LTR MaLR 356 556 -34 2186 95 3 13 chr21 8300068 8300399 -26607171 - AluY SINE Alu 0 311 1 223 254 159 0 chr21 8300743 8300806 -26606764 - MIR SINE MIR -157 105 33 2889 93 37 9 chr21 8302258 8302297 -26605273 - MLT2A1 LTR ERVL 0 444 408 540 116 0 0 chr21 8302297 8302392 -26605178 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 2889 93 37 9 chr21 8302392 8302784 -26604786 - MLT2A1 LTR ERVL -36 408 1 2384 53 0 0 chr21 8302799 8303110 -26604460 - AluY SINE Alu 0 311 1 293 100 20 0 chr21 8303693 8303743 -26603827 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 54 0 0 chr21 8303937 8303974 -26603596 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr21 8305110 8305132 -26602438 + AT_rich Low_complexity Low_complexity 1 22 0 2209 107 16 0 chr21 8305196 8305504 -26602066 - AluSp SINE Alu 0 313 1 503 230 20 34 chr21 8306667 8306830 -26600740 + MLT1G1 LTR MaLR 1 119 -411 5259 217 76 40 chr21 8306830 8307055 -26600515 - L1MC3 LINE L1 -297 7906 7691 2258 69 0 0 chr21 8307055 8307329 -26600241 - AluY SINE Alu -3 308 35 5259 217 76 40 chr21 8307329 8308664 -26598906 - L1MC3 LINE L1 -512 7691 6289 3594 253 41 31 chr21 8308664 8310385 -26597185 - L1MC3 LINE L1 -715 6047 4308 24 0 0 0 chr21 8310425 8310449 -26597121 + AT_rich Low_complexity Low_complexity 1 24 0 405 0 0 0 chr21 8310449 8310494 -26597076 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 249 232 29 0 chr21 8310527 8310596 -26596974 - L1MC3 LINE L1 -2286 4278 4208 401 297 61 32 chr21 8310606 8310916 -26596654 - L1MC3 LINE L1 -2576 3988 3670 1076 272 66 17 chr21 8310977 8311459 -26596111 - L1MC3 LINE L1 -4849 1196 691 1523 239 18 51 chr21 8312061 8312509 -26595061 + MER82 DNA MER2_type 215 647 -6 1165 282 71 65 chr21 8312518 8312884 -26594686 - L1MC3 LINE L1 -5360 685 312 2065 151 0 0 chr21 8312884 8313188 -26594382 + AluSq SINE Alu 3 306 -7 1165 282 71 65 chr21 8313188 8313437 -26594133 - L1MC3 LINE L1 -5733 312 66 27 29 0 0 chr21 8313493 8313527 -26594043 + AT_rich Low_complexity Low_complexity 1 34 0 1579 261 4 41 chr21 8313597 8314061 -26593509 - LTR2 LTR ERV1 0 449 3 13485 150 12 1 chr21 8314063 8316213 -26591357 - Harlequin LTR ERV1 -1 6895 4721 9693 201 28 10 chr21 8316246 8318137 -26589433 - HERVE LTR ERV1 -5888 1925 1 1779 231 7 41 chr21 8318137 8318600 -26588970 - LTR2 LTR ERV1 0 449 3 365 298 107 25 chr21 8318739 8319102 -26588468 - L1ME3A LINE L1 -230 5940 5548 225 291 106 43 chr21 8319233 8319374 -26588196 + L1MC/D LINE L1 5631 5780 -2028 2445 37 0 17 chr21 8320253 8320550 -26587020 + AluY SINE Alu 1 292 -19 1081 242 4 17 chr21 8320789 8321055 -26586515 - AluJb SINE Alu 0 312 50 1182 210 74 86 chr21 8322934 8323356 -26584214 + MER66A LTR ERV1 98 478 0 29 47 0 0 chr21 8324097 8324140 -26583430 + AT_rich Low_complexity Low_complexity 1 43 0 276 218 0 35 chr21 8324491 8324578 -26582992 + CT-rich Low_complexity Low_complexity 1 84 0 369 238 25 41 chr21 8326049 8326171 -26581399 + MER20 DNA MER1_type 99 218 -1 324 120 0 0 chr21 8326791 8326841 -26580729 + (CA)n Simple_repeat Simple_repeat 2 51 0 1299 192 96 43 chr21 8327271 8327645 -26579925 - MSTD LTR MaLR 0 396 3 866 154 13 98 chr21 8328670 8328904 -26578666 - L1MA8 LINE L1 -53 6238 6025 3184 197 10 13 chr21 8328924 8329194 -26578376 - L1MA8 LINE L1 -53 6238 5969 1278 233 38 10 chr21 8329194 8329482 -26578088 - AluJo SINE Alu -13 299 4 3184 197 10 13 chr21 8329482 8329891 -26577679 - L1MA8 LINE L1 -322 5969 5561 207 100 0 0 chr21 8330473 8330503 -26577067 + (TTA)n Simple_repeat Simple_repeat 2 31 0 958 163 0 0 chr21 8330505 8330658 -26576912 - FRAM SINE Alu -30 146 1 180 0 0 0 chr21 8330666 8330686 -26576884 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2154 135 0 0 chr21 8330696 8331008 -26576562 + AluSx SINE Alu 1 312 0 703 234 7 7 chr21 8331018 8331163 -26576407 + FRAM SINE Alu 1 145 -31 21 36 0 0 chr21 8332927 8332955 -26574615 + AT_rich Low_complexity Low_complexity 1 28 0 2458 41 3 3 chr21 8332955 8333250 -26574320 + AluY SINE Alu 1 295 -16 1505 173 78 33 chr21 8333423 8333782 -26573788 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr21 8334090 8334121 -26573449 + AT_rich Low_complexity Low_complexity 1 31 0 1265 261 18 5 chr21 8335539 8335938 -26571632 - L1MD3 LINE L1 -1 7994 7591 337 237 122 86 chr21 8336006 8336145 -26571425 + L1MC3 LINE L1 6572 6695 -1090 373 145 0 58 chr21 8336146 8336215 -26571355 + L1MD3 LINE L1 6742 6806 -1189 712 204 60 106 chr21 8336229 8336464 -26571106 - L1MD3 LINE L1 -435 7560 7337 2228 257 94 45 chr21 8336586 8337009 -26570561 - L1MC3 LINE L1 -632 7153 6752 2429 71 0 0 chr21 8337009 8337317 -26570253 + AluY SINE Alu 1 308 -3 2228 257 94 45 chr21 8337317 8337576 -26569994 - L1MC3 LINE L1 -1033 6752 6507 2482 47 7 0 chr21 8337576 8337874 -26569696 - AluY SINE Alu -11 300 1 2228 257 94 45 chr21 8337874 8338202 -26569368 - L1MC3 LINE L1 -1278 6507 6092 436 384 21 12 chr21 8339094 8339336 -26568234 + L2 LINE L2 892 1135 -2179 33 73 0 0 chr21 8339505 8339573 -26567997 + AT_rich Low_complexity Low_complexity 1 68 0 23 33 0 0 chr21 8339870 8339900 -26567670 + AT_rich Low_complexity Low_complexity 1 30 0 3521 63 0 0 chr21 8339930 8340377 -26567193 - L1PA7 LINE L1 -7 6147 5701 514 46 0 0 chr21 8340377 8340442 -26567128 + L1PA7 LINE L1 5631 5695 -477 1656 181 25 0 chr21 8340788 8341103 -26566467 - L1MC3 LINE L1 -22 7763 7441 24 85 0 0 chr21 8341160 8341219 -26566351 + AT_rich Low_complexity Low_complexity 1 59 0 856 234 0 30 chr21 8344291 8344488 -26563082 - MLT1B LTR MaLR -16 374 184 961 52 0 15 chr21 8345443 8345577 -26561993 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 1282 206 49 31 chr21 8346175 8346461 -26561109 + MLT2B1 LTR ERVL 16 306 -214 25 0 0 0 chr21 8347312 8347337 -26560233 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 8347522 8347543 -26560027 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr21 8347616 8347664 -26559906 + AT_rich Low_complexity Low_complexity 1 48 0 1378 220 26 36 chr21 8348542 8348849 -26558721 + MLT2B1 LTR ERVL 1 304 -216 7328 167 68 36 chr21 8348849 8349297 -26558273 - MER52A LTR ERV1 0 1755 1323 2275 114 0 0 chr21 8349297 8349604 -26557966 - AluSq SINE Alu -6 307 1 7328 167 68 36 chr21 8349604 8350788 -26556782 - MER52A LTR ERV1 -432 1323 1 868 222 66 28 chr21 8350788 8351000 -26556570 + MLT2B1 LTR ERVL 301 520 0 388 319 35 0 chr21 8352416 8352557 -26555013 - L1M4 LINE L1 -1870 4276 4131 2012 111 4 0 chr21 8352566 8352845 -26554725 - AluSg SINE Alu -11 299 20 734 73 29 15 chr21 8352959 8353095 -26554475 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 741 298 28 17 chr21 8353239 8353699 -26553871 + L1ME1 LINE L1 2219 2683 -3463 32 67 0 0 chr21 8353812 8353872 -26553698 + AT_rich Low_complexity Low_complexity 1 60 0 265 182 26 13 chr21 8353972 8354049 -26553521 + (TA)n Simple_repeat Simple_repeat 2 79 0 240 217 109 22 chr21 8354057 8354149 -26553421 + L1ME1 LINE L1 4499 4598 -1548 39 50 0 0 chr21 8354437 8354497 -26553073 + AT_rich Low_complexity Low_complexity 1 60 0 2256 131 16 22 chr21 8354831 8355197 -26552373 + THE1B LTR MaLR 1 364 0 11460 96 7 1 chr21 8355197 8356768 -26550802 + THE1B-int LTR MaLR 1 1580 0 2090 153 16 25 chr21 8356768 8357135 -26550435 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr21 8357345 8357369 -26550201 + AT_rich Low_complexity Low_complexity 1 24 0 1564 120 0 4 chr21 8357599 8357840 -26549730 - L1PA13 LINE L1 -4 6159 5920 1272 99 11 5 chr21 8357840 8358031 -26549539 + L1PA13 LINE L1 5728 5919 -249 2357 60 0 17 chr21 8358191 8358491 -26549079 - AluY SINE Alu -16 295 1 2662 237 19 38 chr21 8359422 8360191 -26547379 + L1ME1 LINE L1 5408 6162 -4 216 97 0 0 chr21 8360827 8360858 -26546712 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 624 164 27 9 chr21 8361167 8361277 -26546293 - FRAM SINE Alu -22 154 43 1918 177 5 18 chr21 8361882 8361931 -26545639 - L1MB3 LINE L1 -2 6181 6133 2397 130 67 24 chr21 8361931 8362347 -26545223 + MER57B LTR ERV1 1 434 0 1918 177 5 18 chr21 8362347 8362681 -26544889 - L1MB3 LINE L1 -50 6133 5803 2034 240 27 4 chr21 8362715 8363270 -26544300 - L1MB3 LINE L1 -837 5309 4742 347 147 133 0 chr21 8363269 8363344 -26544226 + L1M3 LINE L1 5350 5434 -749 8195 228 31 16 chr21 8363340 8366333 -26541237 + L1PA13 LINE L1 695 3755 -3042 201 39 0 0 chr21 8366333 8366359 -26541211 + (CAA)n Simple_repeat Simple_repeat 3 28 0 8195 228 31 16 chr21 8366359 8366594 -26540976 + L1PA13 LINE L1 3755 3985 -2812 1833 147 52 38 chr21 8366596 8366669 -26540901 + THE1C LTR MaLR 3 74 -301 5203 97 12 40 chr21 8366669 8367471 -26540099 - LTR17 LTR ERV1 0 780 1 1833 147 52 38 chr21 8367471 8367765 -26539805 + THE1C LTR MaLR 74 375 0 8425 150 66 11 chr21 8367765 8369263 -26538307 + THE1C-int LTR MaLR 1 1580 0 682 96 85 28 chr21 8369263 8369409 -26538161 + THE1C LTR MaLR 1 109 -266 412 303 57 58 chr21 8369412 8370609 -26536961 - L1MDb LINE L1 -4210 2051 819 494 292 64 47 chr21 8370623 8370856 -26536714 - L1MDb LINE L1 -5330 740 504 450 333 118 7 chr21 8370858 8371137 -26536433 - L1MDb LINE L1 -5589 481 172 263 91 0 0 chr21 8371765 8371798 -26535772 - U2 snRNA snRNA -155 33 1 28 61 0 0 chr21 8372323 8372372 -26535198 + AT_rich Low_complexity Low_complexity 1 49 0 213 211 0 0 chr21 8372372 8372424 -26535146 + (TA)n Simple_repeat Simple_repeat 1 52 0 2961 272 59 53 chr21 8372483 8373051 -26534519 + L1MB8 LINE L1 17 580 -6279 2034 110 0 0 chr21 8373051 8373332 -26534238 + AluSg SINE Alu 30 310 0 2961 272 59 53 chr21 8373332 8373919 -26533651 + L1MB8 LINE L1 580 1179 -5680 1521 207 18 67 chr21 8374366 8374619 -26532951 + MER39 LTR ERV1 340 570 -137 1692 181 0 21 chr21 8374619 8374942 -26532628 - AluSx SINE Alu 0 319 3 1521 207 18 67 chr21 8374942 8375074 -26532496 + MER39 LTR ERV1 570 707 0 840 252 79 34 chr21 8375113 8375586 -26531984 + L1MB8 LINE L1 2810 3311 -3646 573 120 11 0 chr21 8375633 8375725 -26531845 + MLT2B2 LTR ERVL 5 97 -418 2779 161 26 6 chr21 8375772 8376268 -26531302 - MER84 LTR ERV1 0 507 2 450 111 42 14 chr21 8376268 8376340 -26531230 - MER84 LTR ERVI -433 74 1 541 203 110 0 chr21 8376343 8376461 -26531109 + MLT2B1 LTR ERVL 312 442 -78 209 57 29 0 chr21 8376496 8376531 -26531039 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 1448 218 32 35 chr21 8376578 8377070 -26530500 + L1MB8 LINE L1 3371 3861 -3096 725 190 39 4 chr21 8377070 8377352 -26530218 + MLT1B LTR MaLR 1 318 -72 367 259 22 0 chr21 8377427 8377562 -26530008 + L1MB8 LINE L1 3858 3995 -2962 1265 275 28 26 chr21 8377715 8378216 -26529354 + L1MB8 LINE L1 4186 4687 -2270 3071 226 67 36 chr21 8378464 8378799 -26528771 + L1MB8 LINE L1 5170 5493 -1496 1641 191 7 7 chr21 8378799 8379098 -26528472 + AluJo SINE Alu 6 304 -8 3071 226 67 36 chr21 8379098 8379937 -26527633 + L1MB8 LINE L1 5493 6411 -578 2358 68 13 0 chr21 8379937 8380244 -26527326 + AluY SINE Alu 1 311 0 3071 226 67 36 chr21 8380244 8380837 -26526733 + L1MB8 LINE L1 6411 6984 -5 349 232 115 19 chr21 8381325 8381348 -26526222 - MLT1H LTR MaLR -4 563 544 5551 134 13 4 chr21 8381348 8382349 -26525221 + L1PA15 LINE L1 5157 6165 0 349 232 115 19 chr21 8382349 8382459 -26525111 - MLT1H LTR MaLR -23 544 420 2070 134 22 22 chr21 8382551 8383148 -26524422 + MER4A LTR ERV1 1 465 0 709 313 4 13 chr21 8383148 8383375 -26524195 - MLT1H LTR MaLR -253 296 72 34 42 0 0 chr21 8385138 8385186 -26522384 + AT_rich Low_complexity Low_complexity 1 48 0 3460 64 21 13 chr21 8386681 8387150 -26520420 + L1PA10 LINE L1 5694 6166 -2 21 36 0 0 chr21 8387160 8387188 -26520382 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 8387251 8387282 -26520288 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 8389225 8389248 -26518322 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 8390051 8390072 -26517498 + AT_rich Low_complexity Low_complexity 1 21 0 502 316 91 61 chr21 8391048 8391488 -26516082 + L1M4 LINE L1 3787 4239 -1907 24 53 0 0 chr21 8391759 8391797 -26515773 + AT_rich Low_complexity Low_complexity 1 38 0 847 270 21 62 chr21 8392108 8392619 -26514951 + L1MC3 LINE L1 6530 6953 -832 232 342 58 0 chr21 8392729 8392849 -26514721 + L1MC4 LINE L1 7316 7442 -600 22 56 0 0 chr21 8392909 8392945 -26514625 + AT_rich Low_complexity Low_complexity 1 36 0 313 241 115 47 chr21 8392989 8393180 -26514390 + L1MC4 LINE L1 7584 7787 -255 207 204 0 0 chr21 8393271 8393320 -26514250 + (TA)n Simple_repeat Simple_repeat 1 49 0 317 217 65 51 chr21 8393336 8393474 -26514096 + L1MC4 LINE L1 7902 8041 -1 243 0 0 0 chr21 8394097 8394124 -26513446 + (TG)n Simple_repeat Simple_repeat 1 27 0 7741 13 0 0 chr21 8394838 8396180 -26511390 - L1PA2 LINE L1 -2 6153 4814 8293 112 7 24 chr21 8396181 8397051 -26510519 + HSMAR1 DNA Mariner 96 941 -346 2272 87 3 3 chr21 8397051 8397360 -26510210 + AluY SINE Alu 1 309 -2 8293 112 7 24 chr21 8397360 8397702 -26509868 + HSMAR1 DNA Mariner 941 1287 0 208 143 0 0 chr21 8397802 8397837 -26509733 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr21 8398194 8398233 -26509337 + AT_rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chr21 8398783 8398818 -26508752 + AT_rich Low_complexity Low_complexity 1 35 0 1518 154 65 94 chr21 8399662 8400064 -26507506 - MLT1B LTR MaLR 0 390 1 291 321 122 23 chr21 8400289 8400420 -26507150 + MIR SINE MIR 8 151 -111 294 29 0 0 chr21 8401532 8401567 -26506003 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr21 8401732 8401761 -26505809 + AT_rich Low_complexity Low_complexity 1 29 0 613 250 134 55 chr21 8401846 8402006 -26505564 + LTR33 LTR ERVL 1 147 -374 1369 195 19 73 chr21 8402006 8402416 -26505154 + MLT1B LTR MaLR 1 388 -2 613 250 134 55 chr21 8402416 8402547 -26505023 + LTR33 LTR ERVL 147 315 -206 1954 108 0 21 chr21 8402700 8402979 -26504591 - AluSq SINE Alu -17 296 24 233 231 48 19 chr21 8403061 8403165 -26504405 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 2316 129 11 24 chr21 8403317 8403697 -26503873 + THE1C LTR MaLR 1 375 0 2168 92 3 10 chr21 8404456 8404748 -26502822 + AluSq SINE Alu 13 302 -11 1873 110 0 0 chr21 8407569 8407833 -26499737 + AluSc SINE Alu 43 306 -3 1141 253 67 36 chr21 8407877 8408323 -26499247 - L1ME1 LINE L1 -4 6162 5703 453 205 0 0 chr21 8408409 8408521 -26499049 + (TA)n Simple_repeat Simple_repeat 1 112 0 332 191 15 0 chr21 8408524 8408592 -26498978 - L1MCa LINE L1 -4363 2063 1995 991 262 15 32 chr21 8408600 8409196 -26498374 - L1ME1 LINE L1 -588 5578 4995 1789 167 7 3 chr21 8409258 8409558 -26498012 - AluJo SINE Alu -11 301 1 430 241 46 84 chr21 8409674 8409968 -26497602 + MLT2C1 LTR ERVL 126 413 -1 388 282 0 19 chr21 8409971 8410074 -26497496 - L1ME1 LINE L1 -1230 4916 4816 2292 59 3 0 chr21 8410077 8410363 -26497207 - AluY SINE Alu -24 287 1 237 293 0 0 chr21 8410419 8410477 -26497093 - L1ME1 LINE L1 -1371 4775 4718 542 284 33 16 chr21 8411595 8411778 -26495792 - MER5A DNA MER1_type 0 189 4 904 203 173 5 chr21 8411860 8412062 -26495508 + MER8 DNA MER2_type 2 237 -2 2183 166 11 82 chr21 8412089 8412612 -26494958 - MER101B LTR ERV1 0 570 85 23 0 0 0 chr21 8413245 8413268 -26494302 + AT_rich Low_complexity Low_complexity 1 23 0 2156 113 3 0 chr21 8413620 8413922 -26493648 - AluSx SINE Alu -9 303 1 186 43 0 0 chr21 8414040 8414063 -26493507 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr21 8414357 8414380 -26493190 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 8414483 8414508 -26493062 + AT_rich Low_complexity Low_complexity 1 25 0 2371 156 32 28 chr21 8415722 8416153 -26491417 - Tigger2a DNA MER2_type -1 433 1 207 359 69 53 chr21 8416681 8417113 -26490457 + L2 LINE L2 2028 2466 -848 2207 102 3 0 chr21 8417130 8417424 -26490146 - AluSx SINE Alu -17 295 1 654 224 33 6 chr21 8418045 8418228 -26489342 + MER53 DNA DNA 2 189 0 2645 20 0 0 chr21 8418331 8418629 -26488941 + AluY SINE Alu 1 298 -13 1451 276 61 29 chr21 8419035 8419896 -26487674 - L1ME1 LINE L1 -5 6161 5258 2535 105 36 10 chr21 8420475 8420865 -26486705 + MLT2A1 LTR ERVL 1 400 -44 201 117 50 0 chr21 8420872 8420932 -26486638 + (TA)n Simple_repeat Simple_repeat 2 64 0 331 125 0 0 chr21 8420949 8420997 -26486573 + MLT2A1 LTR ERVL 473 520 0 17530 82 3 1 chr21 8420997 8423283 -26484287 + HERVL-A1 LTR ERVL 1 2290 -3364 263 213 75 43 chr21 8423523 8423617 -26483953 + MER52A LTR ERV1 1096 1192 -563 216 0 0 0 chr21 8424354 8424378 -26483192 + (A)n Simple_repeat Simple_repeat 1 24 0 312 356 78 15 chr21 8424617 8424822 -26482748 - MIR SINE MIR -44 218 1 22 35 0 0 chr21 8425277 8425306 -26482264 + AT_rich Low_complexity Low_complexity 1 29 0 218 176 20 0 chr21 8425324 8425375 -26482195 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 56 0 0 chr21 8426045 8426081 -26481489 + AT_rich Low_complexity Low_complexity 1 36 0 521 352 62 34 chr21 8426524 8426919 -26480651 - L2 LINE L2 -276 3037 2632 946 320 75 54 chr21 8427108 8427916 -26479654 - L2 LINE L2 0 3313 2475 280 241 0 0 chr21 8428193 8428247 -26479323 - L2 LINE L2 -2065 1249 1196 306 73 0 0 chr21 8428362 8428403 -26479167 + (T)n Simple_repeat Simple_repeat 1 41 0 530 191 25 96 chr21 8428814 8428971 -26478599 + MER49 LTR ERV1 5 150 -773 396 278 20 24 chr21 8428938 8429103 -26478467 + MER49 LTR ERV1 471 623 -99 216 122 0 0 chr21 8429245 8429286 -26478284 + (TG)n Simple_repeat Simple_repeat 2 42 0 1424 134 0 27 chr21 8429790 8430014 -26477556 - MER1B DNA MER1_type -2 337 120 290 26 26 0 chr21 8430014 8430022 -26477548 + (TG)n Simple_repeat Simple_repeat 1 48 0 290 26 26 0 chr21 8430022 8430061 -26477509 + (TG)n Simple_repeat Simple_repeat 2 41 0 341 173 0 13 chr21 8430143 8430218 -26477352 + (TA)n Simple_repeat Simple_repeat 1 74 0 13590 194 23 14 chr21 8430218 8433870 -26473700 - L1P5 LINE L1 -360 6507 2826 14863 142 26 3 chr21 8433878 8436305 -26471265 - L1P5 LINE L1 -4106 2757 275 1019 181 6 0 chr21 8436306 8436488 -26471082 - L1P5 LINE L1 -6678 185 3 405 229 70 38 chr21 8436563 8436720 -26470850 + L1ME3 LINE L1 6000 6161 -1 21 57 0 0 chr21 8437172 8437207 -26470363 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr21 8437539 8437573 -26469997 + AT_rich Low_complexity Low_complexity 1 34 0 2227 97 7 0 chr21 8437590 8437889 -26469681 - AluSg SINE Alu -9 301 1 552 214 8 0 chr21 8437897 8438014 -26469556 + L1PA16 LINE L1 6048 6165 -1 1843 205 32 3 chr21 8439019 8439366 -26468204 - MLT1A1 LTR MaLR 0 365 9 565 316 87 0 chr21 8439485 8439716 -26467854 - MLT1I LTR MaLR 0 409 159 861 361 45 21 chr21 8441464 8442090 -26465480 - HERVL LTR ERVL -2257 3397 2757 2353 54 10 3 chr21 8442252 8442548 -26465022 + AluY SINE Alu 1 298 -13 1972 85 27 0 chr21 8444822 8445080 -26462490 + AluY SINE Alu 33 297 -14 366 23 0 0 chr21 8445696 8445739 -26461831 + (TG)n Simple_repeat Simple_repeat 2 44 0 2402 77 1 0 chr21 8445882 8446782 -26460788 - L1P LINE L1 -2515 3631 2551 4216 62 4 0 chr21 8446782 8447349 -26460221 + L1PA6 LINE L1 5605 6173 0 24 32 0 0 chr21 8447406 8447437 -26460133 + AT_rich Low_complexity Low_complexity 1 31 0 977 138 33 6 chr21 8447470 8447651 -26459919 + L1MA4 LINE L1 6109 6294 -6 23 0 0 0 chr21 8447693 8447716 -26459854 + AT_rich Low_complexity Low_complexity 1 23 0 1072 162 128 0 chr21 8447717 8447921 -26459649 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr21 8447960 8447988 -26459582 + AT_rich Low_complexity Low_complexity 1 28 0 1061 143 7 0 chr21 8448341 8448519 -26459051 - AluSg/x SINE Alu 0 308 130 2388 74 0 16 chr21 8448520 8448832 -26458738 - AluY SINE Alu -4 307 1 1410 160 4 9 chr21 8450436 8450667 -26456903 - MER4B LTR ERV1 0 610 381 599 139 0 30 chr21 8450808 8450909 -26456661 - MER4A LTR ERV1 -566 98 1 2567 83 53 6 chr21 8451340 8451700 -26455870 + MER51B LTR ERV1 1 377 0 267 312 40 87 chr21 8451996 8452071 -26455499 + L2 LINE L2 271 348 -2966 1887 123 3 40 chr21 8452071 8452371 -26455199 - AluY SINE Alu -22 289 1 267 312 40 87 chr21 8452371 8452468 -26455102 + L2 LINE L2 348 435 -2879 21 0 0 0 chr21 8452602 8452623 -26454947 + AT_rich Low_complexity Low_complexity 1 21 0 241 321 29 29 chr21 8453041 8453181 -26454389 + L2 LINE L2 1931 2070 -1244 296 47 0 23 chr21 8453269 8453312 -26454258 + (CA)n Simple_repeat Simple_repeat 1 42 0 613 81 0 0 chr21 8453455 8453541 -26454029 + MSTB1 LTR MaLR 1 86 -346 23 68 0 0 chr21 8454521 8454565 -26453005 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr21 8454783 8454827 -26452743 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr21 8455140 8455163 -26452407 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr21 8455635 8455686 -26451884 + AT_rich Low_complexity Low_complexity 1 51 0 570 222 48 113 chr21 8455744 8456186 -26451384 - MER57A LTR ERV1 0 403 6 246 196 20 0 chr21 8456467 8456518 -26451052 + L2 LINE L2 3261 3312 -1 23 0 0 0 chr21 8457305 8457328 -26450242 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr21 8458280 8458303 -26449267 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 8458879 8458907 -26448663 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 8459100 8459144 -26448426 + AT_rich Low_complexity Low_complexity 1 44 0 33 73 0 0 chr21 8459194 8459262 -26448308 + AT_rich Low_complexity Low_complexity 1 68 0 802 178 0 15 chr21 8459370 8459505 -26448065 - FLAM_C SINE Alu 0 133 1 330 115 0 0 chr21 8459536 8459588 -26447982 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 2029 135 10 3 chr21 8459588 8459891 -26447679 - AluSx SINE Alu -7 305 1 34 0 0 0 chr21 8460277 8460311 -26447259 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr21 8460359 8460395 -26447175 + AT_rich Low_complexity Low_complexity 1 36 0 1760 73 0 9 chr21 8461056 8461330 -26446240 - AluSx SINE Alu 0 323 52 389 282 33 70 chr21 8462127 8462340 -26445230 + HAL1 LINE L1 1515 1719 -788 21 36 0 0 chr21 8463039 8463067 -26444503 + AT_rich Low_complexity Low_complexity 1 28 0 43 20 0 0 chr21 8463643 8463693 -26443877 + AT_rich Low_complexity Low_complexity 1 50 0 1944 95 7 28 chr21 8465243 8465564 -26442006 + AluSc SINE Alu 2 316 0 2014 163 27 57 chr21 8466485 8466926 -26440644 + MSTC LTR MaLR 1 428 0 28 29 0 0 chr21 8467027 8467062 -26440508 + AT_rich Low_complexity Low_complexity 1 35 0 1867 163 96 27 chr21 8467233 8467638 -26439932 - Tigger2a DNA MER2_type 0 434 2 2123 80 40 0 chr21 8467895 8468171 -26439399 + AluY SINE Alu 1 287 -24 294 73 0 0 chr21 8468171 8468212 -26439358 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr21 8468629 8468650 -26438920 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr21 8468917 8468944 -26438626 + AT_rich Low_complexity Low_complexity 1 27 0 324 292 14 0 chr21 8469185 8469257 -26438313 + MER5A DNA MER1_type 9 81 -108 1677 306 59 38 chr21 8469386 8470367 -26437203 + L1PBa LINE L1 -656 345 -5859 962 258 14 21 chr21 8470383 8470960 -26436610 + L1PBa LINE L1 1 994 -5210 1587 174 177 11 chr21 8470960 8471327 -26436243 - MSTA LTR MaLR 0 428 1 5278 144 13 9 chr21 8471327 8472165 -26435405 - MSTA-int LTR MaLR 0 1580 740 838 220 10 24 chr21 8472171 8472384 -26435186 - MSTA-int LTR MaLR -1154 426 280 3573 143 23 64 chr21 8472376 8473084 -26434486 - THE1-int LTR MaLR -899 681 3 4209 190 41 14 chr21 8473325 8474451 -26433119 + L1PB3 LINE L1 215 1309 -4894 2129 153 16 11 chr21 8474451 8474824 -26432746 + THE1C LTR MaLR 1 375 0 4209 190 41 14 chr21 8474824 8475014 -26432556 + L1PB3 LINE L1 1309 3355 -2848 503 147 0 86 chr21 8475020 8475136 -26432434 + MER50 LTR ERV1 499 604 -130 3532 223 10 42 chr21 8475140 8476002 -26431568 + L1PB3 LINE L1 3346 4179 -2024 7176 49 1 0 chr21 8476002 8477432 -26430138 - L1PA5 LINE L1 0 6154 4724 3532 223 10 42 chr21 8477432 8477483 -26430087 + L1PB3 LINE L1 4179 4230 -1973 5573 181 10 7 chr21 8477479 8479526 -26428044 + L1PB3 LINE L1 4157 6204 -7 24 0 0 0 chr21 8479529 8479553 -26428017 + AT_rich Low_complexity Low_complexity 1 24 0 714 229 86 6 chr21 8479719 8479894 -26427676 + MER5A DNA MER1_type 1 189 0 315 146 0 0 chr21 8480369 8480424 -26427146 + (TA)n Simple_repeat Simple_repeat 2 56 0 2414 97 0 0 chr21 8480567 8480876 -26426694 + AluSx SINE Alu 1 309 -3 2173 47 32 0 chr21 8480933 8481212 -26426358 + L1PA3 LINE L1 5868 6155 0 23 0 0 0 chr21 8482168 8482191 -26425379 + AT_rich Low_complexity Low_complexity 1 23 0 258 56 0 0 chr21 8483823 8483859 -26423711 + (GA)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr21 8484062 8484085 -26423485 + AT_rich Low_complexity Low_complexity 1 23 0 222 105 0 0 chr21 8484764 8484802 -26422768 + (A)n Simple_repeat Simple_repeat 1 38 0 28 61 0 0 chr21 8484943 8484992 -26422578 + AT_rich Low_complexity Low_complexity 1 49 0 253 333 79 44 chr21 8485404 8485632 -26421938 - L2 LINE L2 -418 2896 2661 1057 253 45 92 chr21 8485636 8485920 -26421650 + MLT1E3 LTR MaLR 2 298 -326 1854 193 62 31 chr21 8485920 8486339 -26421231 - MSTB1 LTR MaLR 0 432 1 1057 253 45 92 chr21 8486339 8486731 -26420839 + MLT1E3 LTR MaLR 298 624 0 371 205 0 0 chr21 8487875 8487985 -26419585 + MLT1E3 LTR MaLR 62 189 -438 857 201 22 112 chr21 8488109 8488329 -26419241 + MLT1E3 LTR MaLR 380 573 -51 1908 234 74 10 chr21 8488329 8488371 -26419199 - MLT2B2 LTR ERVL 0 515 477 246 81 0 0 chr21 8488371 8488408 -26419162 + (CA)n Simple_repeat Simple_repeat 2 38 0 1908 234 74 10 chr21 8488408 8488849 -26418721 - MLT2B2 LTR ERVL -38 477 1 857 201 22 112 chr21 8488849 8488897 -26418673 + MLT1E3 LTR MaLR 573 624 0 198 360 22 7 chr21 8488905 8489044 -26418526 + L2 LINE L2 2238 2378 -936 429 276 31 0 chr21 8490362 8490489 -26417081 + L1MD1 LINE L1 6060 6190 -52 4736 184 24 8 chr21 8490494 8491729 -26415841 - L1PB4 LINE L1 -8 6148 4892 867 284 141 72 chr21 8491777 8491976 -26415594 + L2 LINE L2 1764 1948 -1366 2222 94 0 13 chr21 8491976 8492274 -26415296 - AluSc SINE Alu -13 296 3 867 284 141 72 chr21 8492274 8492777 -26414793 + L2 LINE L2 1948 2514 -800 322 284 21 21 chr21 8493842 8493937 -26413633 + L2 LINE L2 2530 2624 -690 2107 102 0 24 chr21 8494049 8494344 -26413226 + AluSc SINE Alu 1 288 -21 1830 132 14 7 chr21 8494449 8494744 -26412826 + AluSg SINE Alu 2 298 -12 28 29 0 0 chr21 8495141 8495176 -26412394 + AT_rich Low_complexity Low_complexity 1 35 0 319 207 109 35 chr21 8495866 8496040 -26411530 + HAL1 LINE L1 950 1136 -1371 343 290 30 59 chr21 8496217 8496386 -26411184 + HAL1 LINE L1 1399 1562 -945 695 325 50 54 chr21 8496476 8496996 -26410574 + HAL1 LINE L1 1988 2505 -2 690 216 6 41 chr21 8498080 8498251 -26409319 - MLT-int LTR MaLR -903 832 668 2380 46 7 10 chr21 8498248 8498552 -26409018 - AluY SINE Alu -8 303 1 203 211 39 31 chr21 8499436 8499564 -26408006 + CT-rich Low_complexity Low_complexity 4 132 0 1649 264 29 3 chr21 8500526 8500905 -26406665 + MER70B LTR ERVL 1 389 -189 267 181 208 14 chr21 8500892 8500964 -26406606 - MLT1A1 LTR MaLR -279 86 1 425 200 8 58 chr21 8501046 8501166 -26406404 - MLT1C LTR MaLR -353 114 1 22 56 0 0 chr21 8501167 8501203 -26406367 + AT_rich Low_complexity Low_complexity 1 36 0 763 41 0 0 chr21 8501507 8501605 -26405965 - L1PA4 LINE L1 0 6155 6058 209 243 14 14 chr21 8502625 8502695 -26404875 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 773 284 120 28 chr21 8502791 8503183 -26404387 - MLT1D LTR MaLR -39 428 22 382 202 12 0 chr21 8503333 8503413 -26404157 - MER96B DNA MER1_type? -192 225 145 1493 194 47 26 chr21 8503413 8503753 -26403817 - MLT1A1 LTR MaLR 0 365 19 1185 251 70 44 chr21 8504004 8504578 -26402992 - L1MC4 LINE L1 -424 7618 7030 537 323 15 20 chr21 8504582 8504780 -26402790 - L1MC4 LINE L1 -1049 6993 6797 323 320 70 11 chr21 8504780 8505140 -26402430 - L1ME LINE L1 -4825 1821 1438 49 18 0 0 chr21 8505183 8505239 -26402331 + AT_rich Low_complexity Low_complexity 1 56 0 342 362 60 37 chr21 8505667 8505965 -26401605 - L1ME LINE L1 -5760 874 570 2272 50 3 7 chr21 8506923 8507220 -26400350 + AluY SINE Alu 1 296 -15 249 116 43 0 chr21 8507222 8507291 -26400279 + (TA)n Simple_repeat Simple_repeat 2 73 0 719 297 75 67 chr21 8509450 8509941 -26397629 + Charlie2 DNA MER1_type 95 589 -2193 393 319 29 58 chr21 8510150 8510391 -26397179 + L2 LINE L2 2511 2744 -570 24 67 0 0 chr21 8512600 8512645 -26394925 + AT_rich Low_complexity Low_complexity 1 45 0 28 61 0 0 chr21 8512713 8512762 -26394808 + AT_rich Low_complexity Low_complexity 1 49 0 902 261 59 63 chr21 8514849 8514876 -26392694 + L1MD1 LINE L1 19 45 -6378 2424 232 4 22 chr21 8514876 8515427 -26392143 - MER87 LTR ERV1 0 541 1 902 261 59 63 chr21 8515427 8515858 -26391712 + L1MD1 LINE L1 45 475 -5948 381 22 0 0 chr21 8516262 8516308 -26391262 + (CA)n Simple_repeat Simple_repeat 2 47 0 594 237 96 92 chr21 8516308 8516523 -26391047 + L1MD1 LINE L1 4482 4695 -2246 1892 144 14 0 chr21 8516523 8516807 -26390763 + AluSx SINE Alu 1 288 -24 594 237 96 92 chr21 8516807 8517145 -26390425 + L1MD1 LINE L1 4695 5040 -1901 1816 197 23 41 chr21 8517159 8517601 -26389969 + L1MD1 LINE L1 6366 6799 -355 786 182 30 6 chr21 8517607 8517772 -26389798 + L1MD1 LINE L1 6851 7019 -18 7902 17 0 0 chr21 8517922 8519388 -26388182 - L1HS LINE L1 -2 6153 4688 4741 20 0 0 chr21 8519382 8519941 -26387629 + L1P LINE L1 4177 4735 -1411 25 0 0 0 chr21 8520160 8520185 -26387385 + AT_rich Low_complexity Low_complexity 1 25 0 2174 113 27 0 chr21 8520545 8520880 -26386690 - L1PA15 LINE L1 -196 5969 5626 1281 112 5 0 chr21 8520880 8521066 -26386504 + L1PA15 LINE L1 5973 6160 -5 344 22 22 0 chr21 8521714 8521759 -26385811 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 420 169 14 0 chr21 8521774 8521845 -26385725 - L1PA8 LINE L1 -200 5972 5901 769 285 55 29 chr21 8522261 8522535 -26385035 + MLT1I LTR MaLR 117 397 -12 24 0 0 0 chr21 8522660 8522684 -26384886 + AT_rich Low_complexity Low_complexity 1 24 0 560 309 65 23 chr21 8523095 8523357 -26384213 + L1MCb LINE L1 1 273 -5772 1750 88 133 236 chr21 8523359 8523973 -26383597 + LTR12 LTR ERV1 15 538 -133 1069 292 39 17 chr21 8523973 8524516 -26383054 + L1MCb LINE L1 960 1573 -4889 1751 154 197 7 chr21 8524768 8525184 -26382386 + LTR54B LTR ERV1 3 497 -1 21 0 0 0 chr21 8528045 8528066 -26379504 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr21 8528515 8528545 -26379025 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2056 115 0 3 chr21 8528683 8528978 -26378592 - AluSg SINE Alu -16 294 1 203 79 26 0 chr21 8530404 8530442 -26377128 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 41 72 0 0 chr21 8530866 8530949 -26376621 + AT_rich Low_complexity Low_complexity 1 83 0 28 29 0 0 chr21 8531102 8531137 -26376433 + AT_rich Low_complexity Low_complexity 1 35 0 850 233 72 40 chr21 8531382 8531730 -26375840 - LTR25 LTR ERV1 -21 773 415 261 180 180 0 chr21 8531701 8531762 -26375808 - MER51A LTR ERV1 -354 280 209 234 254 0 15 chr21 8531755 8531822 -26375748 - LTR27 LTR ERV1 -418 218 153 331 331 65 56 chr21 8532211 8532251 -26375319 - MLT1J LTR MaLR -48 463 425 575 97 0 11 chr21 8532251 8532344 -26375226 + (TA)n Simple_repeat Simple_repeat 2 93 0 331 331 65 56 chr21 8532344 8532626 -26374944 - MLT1J LTR MaLR -86 425 138 272 179 0 24 chr21 8532632 8532716 -26374854 + (TATAA)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr21 8532792 8532815 -26374755 + AT_rich Low_complexity Low_complexity 1 23 0 1042 160 17 0 chr21 8532846 8533021 -26374549 + MER82 DNA MER2_type 54 231 -422 279 54 0 0 chr21 8533421 8533458 -26374112 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr21 8533507 8533528 -26374042 + AT_rich Low_complexity Low_complexity 1 21 0 233 125 0 0 chr21 8533831 8533863 -26373707 - MER70A LTR ERVL 0 472 441 2059 234 55 4 chr21 8533861 8534314 -26373256 - MER70B LTR ERVL -102 476 1 29 28 0 0 chr21 8535125 8535161 -26372409 + AT_rich Low_complexity Low_complexity 1 36 0 214 198 21 31 chr21 8535268 8535364 -26372206 + GA-rich Low_complexity Low_complexity 2 96 0 446 123 0 14 chr21 8535732 8535805 -26371765 - L1PA14 LINE L1 -28 6133 6062 1317 147 4 4 chr21 8535805 8536056 -26371514 + L1P LINE L1 5128 5378 -768 3134 234 82 69 chr21 8536595 8537651 -26369919 + MSTD-int LTR MaLR 666 1735 0 411 285 23 23 chr21 8537651 8537781 -26369789 + MSTD LTR MaLR 1 130 -298 835 216 23 6 chr21 8537817 8537993 -26369577 + MSTD LTR MaLR 218 396 0 232 303 83 15 chr21 8539231 8539363 -26368207 + L2 LINE L2 1284 1424 -1890 2263 81 3 0 chr21 8540323 8540618 -26366952 - AluSp SINE Alu -17 296 1 2232 97 10 3 chr21 8541295 8541603 -26365967 - AluSx SINE Alu -2 310 1 262 161 71 0 chr21 8541751 8541807 -26365763 + MLT1J1 LTR MaLR 385 444 -2 24 91 0 0 chr21 8542128 8542194 -26365376 + AT_rich Low_complexity Low_complexity 1 66 0 192 152 0 0 chr21 8543333 8543366 -26364204 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 33 43 0 0 chr21 8543583 8543630 -26363940 + AT_rich Low_complexity Low_complexity 1 47 0 2183 94 0 0 chr21 8544542 8544961 -26362609 + AluSq SINE Alu 2 420 0 237 260 68 89 chr21 8545860 8546006 -26361564 - MIR SINE MIR -16 246 104 249 108 0 0 chr21 8546620 8546657 -26360913 + (CA)n Simple_repeat Simple_repeat 2 38 0 522 0 0 0 chr21 8547962 8548020 -26359550 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 408 20 0 0 chr21 8548911 8548960 -26358610 + (CA)n Simple_repeat Simple_repeat 2 50 0 191 299 39 39 chr21 8549423 8549500 -26358070 + L2 LINE L2 3190 3266 -47 1055 157 47 51 chr21 8549654 8549890 -26357680 - AluJo SINE Alu -24 288 54 23 0 0 0 chr21 8550037 8550060 -26357510 + AT_rich Low_complexity Low_complexity 1 23 0 10106 186 29 17 chr21 8550071 8553372 -26354198 - L1MA5 LINE L1 -2 7000 3665 13402 122 9 2 chr21 8553386 8556217 -26351353 - L1PA8A LINE L1 0 6131 3273 3072 166 5 7 chr21 8556218 8556791 -26350779 + L1PA8A LINE L1 2681 3252 -2894 232 236 55 87 chr21 8556785 8556912 -26350658 - L1PA8A LINE L1 -3172 2974 2852 1093 254 36 4 chr21 8556979 8557259 -26350311 - L1MA5 LINE L1 -3331 3517 3229 1788 148 22 0 chr21 8557271 8557542 -26350028 - AluSx SINE Alu -13 299 23 285 238 0 0 chr21 8557578 8557641 -26349929 - L1MA5 LINE L1 -3857 2991 2929 5945 184 33 34 chr21 8557670 8557712 -26349858 - L1MA5 LINE L1 -3945 2904 2863 1824 149 7 0 chr21 8557712 8558014 -26349556 + AluSx SINE Alu 4 307 0 5945 184 33 34 chr21 8558014 8558999 -26348571 - L1MA5 LINE L1 -3986 2863 1873 2256 176 26 9 chr21 8558999 8559420 -26348150 - MSTA LTR MaLR 0 428 1 5945 184 33 34 chr21 8559420 8559858 -26347712 - L1MA5 LINE L1 -4976 1873 1436 323 372 67 54 chr21 8559886 8560075 -26347495 - L1MA5 LINE L1 -5631 1218 860 1530 279 31 40 chr21 8560263 8560808 -26346762 - L1MA5 LINE L1 -6299 550 11 22 88 0 0 chr21 8561375 8561432 -26346138 + AT_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chr21 8562297 8562347 -26345223 + AT_rich Low_complexity Low_complexity 1 50 0 2154 68 20 10 chr21 8562518 8562812 -26344758 - AluY SINE Alu -14 297 1 23 0 0 0 chr21 8563513 8563536 -26344034 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 8563597 8563618 -26343952 + AT_rich Low_complexity Low_complexity 1 21 0 694 204 0 8 chr21 8567077 8567209 -26340361 + FLAM_C SINE Alu 1 131 -12 31 26 0 0 chr21 8567210 8567248 -26340322 + AT_rich Low_complexity Low_complexity 1 38 0 1663 185 11 0 chr21 8567737 8568023 -26339547 - AluJb SINE Alu -17 295 7 647 281 6 6 chr21 8568557 8568724 -26338846 - MIR SINE MIR -44 218 52 27 29 0 0 chr21 8569172 8569206 -26338364 + AT_rich Low_complexity Low_complexity 1 34 0 2091 111 0 29 chr21 8569260 8569566 -26338004 - AluSq SINE Alu -16 297 1 200 326 11 86 chr21 8569837 8570012 -26337558 - MIR SINE MIR -91 171 10 3648 188 116 33 chr21 8571726 8572581 -26334989 - MER21A LTR ERV1 0 931 6 2410 75 13 0 chr21 8572627 8572964 -26334606 + AluSp SINE Alu 2 342 0 457 282 68 59 chr21 8573703 8574245 -26333325 + L1M4 LINE L1 2299 2845 -3301 408 20 0 0 chr21 8574484 8574533 -26333037 + (CA)n Simple_repeat Simple_repeat 2 50 0 1343 171 66 58 chr21 8575743 8576105 -26331465 - MLT1A1 LTR MaLR 0 365 1 3947 170 80 17 chr21 8576603 8577349 -26330221 + MER54B LTR ERVL 1 793 0 29 0 0 0 chr21 8579292 8579321 -26328249 + AT_rich Low_complexity Low_complexity 1 29 0 261 267 11 22 chr21 8579646 8579736 -26327834 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 2287 160 13 61 chr21 8580032 8580488 -26327082 - Tigger2 DNA MER2_type 0 2718 1 2054 91 14 11 chr21 8580782 8581103 -26326467 + AluSq SINE Alu 7 328 0 2002 110 3 27 chr21 8581402 8581701 -26325869 + AluSg SINE Alu 1 292 -18 21 36 0 0 chr21 8582025 8582053 -26325517 + AT_rich Low_complexity Low_complexity 1 28 0 653 124 0 9 chr21 8582353 8582458 -26325112 + AluSg/x SINE Alu 196 299 -10 23 0 0 0 chr21 8582514 8582537 -26325033 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 0 chr21 8582950 8583256 -26324314 - AluSp SINE Alu -5 308 2 27 49 0 0 chr21 8583982 8584023 -26323547 + AT_rich Low_complexity Low_complexity 1 41 0 386 230 101 22 chr21 8586590 8586729 -26320841 - MER110A LTR ERV1 -275 193 44 1832 191 2 72 chr21 8586729 8587143 -26320427 + MLT1B LTR MaLR 1 385 -5 26 30 0 0 chr21 8587320 8587353 -26320217 + AT_rich Low_complexity Low_complexity 1 33 0 2061 122 0 16 chr21 8587638 8587961 -26319609 - AluSg1 SINE Alu 0 309 5 1690 214 6 26 chr21 8587966 8588316 -26319254 - MLT1A1 LTR MaLR -13 352 10 289 301 77 56 chr21 8588327 8588470 -26319100 + MER5B DNA MER1_type 6 151 -27 1230 228 83 8 chr21 8588717 8589072 -26318498 - LTR2 LTR ERV1 0 490 58 3766 51 45 0 chr21 8589317 8589786 -26317784 + LTR2B LTR ERV1 1 490 0 23 33 0 0 chr21 8590130 8590160 -26317410 + AT_rich Low_complexity Low_complexity 1 30 0 482 306 66 24 chr21 8590953 8591241 -26316329 + L1M4 LINE L1 2 301 -6241 857 284 80 34 chr21 8591265 8591701 -26315869 + L1M4 LINE L1 357 812 -5730 1893 195 64 36 chr21 8591855 8592049 -26315521 + L1MB5 LINE L1 5282 5469 -705 3059 98 12 58 chr21 8592049 8592229 -26315341 - L1PA13 LINE L1 -8 6155 5968 1457 191 122 22 chr21 8592229 8592638 -26314932 + LTR7 LTR ERV1 1 450 0 3059 98 12 58 chr21 8592638 8592957 -26314613 - L1PA13 LINE L1 -195 5968 5679 636 38 0 0 chr21 8592958 8593037 -26314533 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 1893 195 64 36 chr21 8593037 8593338 -26314232 + L1MB5 LINE L1 5469 5797 -377 294 29 0 0 chr21 8593338 8593373 -26314197 + (CA)n Simple_repeat Simple_repeat 2 36 0 1893 195 64 36 chr21 8593373 8593407 -26314163 + L1MB5 LINE L1 5797 5829 -345 1213 231 43 67 chr21 8593409 8593428 -26314142 + MLT1A1 LTR MaLR 2 20 -345 2176 170 59 2 chr21 8593428 8593833 -26313737 - MSTC LTR MaLR 0 428 1 1213 231 43 67 chr21 8593833 8594186 -26313384 + MLT1A1 LTR MaLR 20 365 0 1460 182 34 62 chr21 8594186 8594538 -26313032 + L1MB5 LINE L1 5826 6167 -7 276 267 93 56 chr21 8594837 8594998 -26312572 + MER34 LTR ERV1 11 177 -365 629 146 29 0 chr21 8595006 8595109 -26312461 + MER4E LTR ERV1 661 766 0 21 0 0 0 chr21 8595896 8595917 -26311653 + AT_rich Low_complexity Low_complexity 1 21 0 1643 232 41 60 chr21 8597345 8597909 -26309661 - MER21B LTR ERV1 -27 836 284 355 264 0 0 chr21 8598145 8598217 -26309353 - MER21B LTR ERV1 -773 90 19 27 0 0 0 chr21 8598303 8598330 -26309240 + AT_rich Low_complexity Low_complexity 1 27 0 403 175 124 124 chr21 8598357 8598551 -26309019 + LTR49 LTR ERV1 402 595 0 934 264 11 39 chr21 8598571 8598738 -26308832 - MER93a LTR ERV1 0 402 245 2363 143 3 3 chr21 8598738 8599101 -26308469 + THE1B LTR MaLR 2 364 0 934 264 11 39 chr21 8599101 8599217 -26308353 - MER93a LTR ERV1 -157 245 127 279 150 0 0 chr21 8599323 8599383 -26308187 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 51 0 0 chr21 8600143 8600182 -26307388 + AT_rich Low_complexity Low_complexity 1 39 0 2380 77 0 3 chr21 8600382 8600682 -26306888 - AluY SINE Alu -12 299 1 357 330 49 22 chr21 8600838 8601023 -26306547 + L1M4 LINE L1 3912 4101 -2045 195 222 0 0 chr21 8601681 8601726 -26305844 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 25 0 0 0 chr21 8602567 8602592 -26304978 + AT_rich Low_complexity Low_complexity 1 25 0 558 261 56 48 chr21 8603391 8603786 -26303784 - L1M4 LINE L1 -2793 3353 2956 948 232 79 85 chr21 8604051 8604434 -26303136 + MLT1C LTR MaLR 1 382 -85 2124 128 0 22 chr21 8604434 8604746 -26302824 - AluSx SINE Alu -7 305 1 948 232 79 85 chr21 8604746 8604832 -26302738 + MLT1C LTR MaLR 382 467 0 704 330 31 3 chr21 8604861 8605152 -26302418 - L1MCb LINE L1 -4851 1194 896 300 342 27 0 chr21 8605339 8605450 -26302120 - L1MCb LINE L1 -5902 143 30 467 92 100 0 chr21 8605710 8605943 -26301627 + (TA)n Simple_repeat Simple_repeat 1 256 0 550 146 37 30 chr21 8605944 8606108 -26301462 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 491 100 85 7 chr21 8606114 8606875 -26300695 + (TA)n Simple_repeat Simple_repeat 1 820 0 381 209 34 23 chr21 8606904 8607081 -26300489 + (TA)n Simple_repeat Simple_repeat 2 180 0 412 222 29 23 chr21 8607002 8607173 -26300397 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 352 116 79 6 chr21 8607174 8607338 -26300232 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 36 0 0 chr21 8607643 8607671 -26299899 + AT_rich Low_complexity Low_complexity 1 28 0 3210 147 18 43 chr21 8607698 8608318 -26299252 + L1MA3 LINE L1 5696 6299 -6 924 234 56 31 chr21 8608558 8608903 -26298667 - MLT1A2 LTR MaLR -5 385 1 314 80 20 0 chr21 8609016 8609066 -26298504 + (CA)n Simple_repeat Simple_repeat 2 52 0 2164 101 0 0 chr21 8609827 8610113 -26297457 + AluSx SINE Alu 27 312 0 3655 102 2 4 chr21 8611118 8611627 -26295943 - MER9 LTR ERVK 0 511 4 216 0 0 0 chr21 8611627 8611651 -26295919 + (CA)n Simple_repeat Simple_repeat 2 25 0 408 319 47 43 chr21 8612136 8612390 -26295180 + MIR SINE MIR 1 255 -7 584 227 33 74 chr21 8612610 8613047 -26294523 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr21 8614171 8614192 -26293378 + AT_rich Low_complexity Low_complexity 1 21 0 2162 123 0 7 chr21 8614201 8614511 -26293059 + AluSq SINE Alu 2 309 -4 241 341 89 7 chr21 8615153 8615288 -26292282 - HAL1 LINE L1 -1618 889 744 2061 239 96 13 chr21 8616418 8617053 -26290517 - MER76 LTR ERV 0 688 1 606 288 14 0 chr21 8617122 8617268 -26290302 + MIR SINE MIR 4 151 -111 1415 221 69 20 chr21 8617904 8618252 -26289318 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr21 8618524 8618553 -26289017 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr21 8618823 8618852 -26288718 + (TA)n Simple_repeat Simple_repeat 1 29 0 401 102 17 0 chr21 8620256 8620315 -26287255 + MLT2A2 LTR ERVL 1 60 -393 679 65 0 0 chr21 8620316 8620408 -26287162 + AluY SINE Alu 212 303 -8 1667 187 21 38 chr21 8620411 8620917 -26286653 + MLT2A2 LTR ERVL 54 554 0 458 79 0 0 chr21 8621503 8621566 -26286004 - L1P3 LINE L1 -742 5430 5368 1992 134 0 0 chr21 8621566 8621879 -26285691 - L1P3 LINE L1 -1087 5059 4747 1975 143 3 10 chr21 8622531 8622839 -26284731 + AluSx SINE Alu 1 306 -6 2175 208 30 56 chr21 8623235 8623806 -26283764 - MER89 LTR ERV1 0 559 4 1820 61 0 0 chr21 8623920 8624148 -26283422 - L1PA7 LINE L1 -8 6146 5919 369 207 0 0 chr21 8626746 8626833 -26280737 + (CA)n Simple_repeat Simple_repeat 2 88 0 25 0 0 0 chr21 8626864 8626889 -26280681 + AT_rich Low_complexity Low_complexity 1 25 0 2686 191 16 14 chr21 8627079 8627644 -26279926 - L1MB3 LINE L1 -1 6182 5617 240 385 67 15 chr21 8628106 8628301 -26279269 + L2 LINE L2 2971 3175 -138 213 39 0 0 chr21 8630230 8630256 -26277314 + (GA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr21 8630708 8630738 -26276832 + AT_rich Low_complexity Low_complexity 1 30 0 722 223 51 6 chr21 8630878 8631053 -26276517 + L1PB4 LINE L1 5902 6084 -72 1657 189 10 0 chr21 8632248 8632539 -26275031 - AluJb SINE Alu -16 296 3 458 197 88 36 chr21 8632587 8632724 -26274846 - L1 LINE L1 -1067 5079 4936 2063 191 98 7 chr21 8632724 8633144 -26274426 + LTR32 LTR ERVL 14 471 0 5266 173 22 3 chr21 8633149 8634183 -26273387 - L1 LINE L1 -1212 4934 3881 5064 170 30 28 chr21 8634181 8634546 -26273024 + L1MA4 LINE L1 5075 5438 -862 2849 10 0 0 chr21 8634546 8634859 -26272711 - AluYb8 SINE Alu -5 313 1 5064 170 30 28 chr21 8634859 8635678 -26271892 + L1MA4 LINE L1 5438 6266 -34 2109 183 52 0 chr21 8635678 8636083 -26271487 - MSTB LTR MaLR 0 426 1 5064 170 30 28 chr21 8636083 8636113 -26271457 + L1MA4 LINE L1 6266 6294 -6 425 242 42 102 chr21 8636232 8636566 -26271004 + L1ME1 LINE L1 1747 2060 -4480 318 148 0 0 chr21 8636585 8636639 -26270931 + (CATA)n Simple_repeat Simple_repeat 3 56 0 29 0 0 0 chr21 8636646 8636675 -26270895 + AT_rich Low_complexity Low_complexity 1 29 0 684 275 56 28 chr21 8636846 8637275 -26270295 + L1ME1 LINE L1 2406 2846 -3875 1032 241 37 62 chr21 8637412 8637733 -26269837 + L1ME1 LINE L1 5893 6203 -357 946 156 6 39 chr21 8637733 8637913 -26269657 + L1PA16 LINE L1 5992 6165 -1 1032 241 37 62 chr21 8637913 8637997 -26269573 + L1ME1 LINE L1 6203 6288 -272 557 301 41 32 chr21 8638032 8638278 -26269292 + L1ME1 LINE L1 6302 6549 -11 1326 159 15 8 chr21 8638383 8638647 -26268923 - L1MA4 LINE L1 -1 6299 6034 2191 88 3 10 chr21 8639064 8639359 -26268211 - AluSc SINE Alu -16 293 1 3822 183 23 33 chr21 8640235 8642858 -26264712 - L1MA8 LINE L1 -192 6099 3352 813 219 79 46 chr21 8643219 8643548 -26264022 + MER69 DNA AcHobo 2187 2526 0 285 273 162 7 chr21 8643650 8643804 -26263766 - MIR SINE MIR -27 235 58 1364 199 38 55 chr21 8644432 8644604 -26262966 + MLT1B LTR MaLR 1 175 -215 1994 137 3 3 chr21 8644604 8644904 -26262666 + AluJb SINE Alu 3 302 -10 1364 199 38 55 chr21 8644904 8645128 -26262442 + MLT1B LTR MaLR 175 390 0 1488 218 42 8 chr21 8645335 8645688 -26261882 - MLT1A1 LTR MaLR 0 365 1 256 357 54 0 chr21 8645792 8645904 -26261666 + L2 LINE L2 3196 3313 0 262 227 10 10 chr21 8647352 8647449 -26260121 + (TA)n Simple_repeat Simple_repeat 1 97 0 22 0 0 0 chr21 8648436 8648458 -26259112 + AT_rich Low_complexity Low_complexity 1 22 0 1945 172 26 28 chr21 8649080 8649099 -26258471 - MLT1B LTR MaLR -2 388 370 1984 177 16 63 chr21 8649099 8649546 -26258024 - MSTC LTR MaLR 0 428 3 1945 172 26 28 chr21 8649546 8649915 -26257655 - MLT1B LTR MaLR -20 370 1 32 57 0 0 chr21 8650374 8650427 -26257143 + AT_rich Low_complexity Low_complexity 1 53 0 1696 136 0 0 chr21 8652016 8652258 -26255312 + AluSg SINE Alu 49 290 -20 313 296 57 86 chr21 8652271 8652585 -26254985 + L1MEc LINE L1 106 410 -5986 1352 319 53 39 chr21 8652585 8653388 -26254182 + L1MEc LINE L1 887 1701 -4695 940 246 51 49 chr21 8653411 8653879 -26253691 + L1MEc LINE L1 1762 2230 -4166 664 192 17 27 chr21 8653905 8654092 -26253478 + MER33 DNA MER1_type 1 172 -108 679 258 26 18 chr21 8654218 8654447 -26253123 + L1M4 LINE L1 4434 4664 -1482 220 169 17 17 chr21 8654570 8654629 -26252941 + (TA)n Simple_repeat Simple_repeat 2 60 0 435 38 0 0 chr21 8655273 8655326 -26252244 + (CA)n Simple_repeat Simple_repeat 2 54 0 205 366 14 0 chr21 8655911 8655982 -26251588 + L2 LINE L2 3177 3248 -24 21 36 0 0 chr21 8656145 8656173 -26251397 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr21 8657149 8657183 -26250387 + AT_rich Low_complexity Low_complexity 1 34 0 254 179 0 30 chr21 8658158 8658225 -26249345 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 307 306 0 0 chr21 8658336 8658421 -26249149 - L1MC4 LINE L1 -1342 6700 6616 31 0 0 0 chr21 8658495 8658526 -26249044 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr21 8658688 8658725 -26248845 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr21 8658949 8658971 -26248599 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 8659066 8659089 -26248481 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr21 8659213 8659259 -26248311 + AT_rich Low_complexity Low_complexity 1 46 0 371 335 60 83 chr21 8660767 8661164 -26246406 - L2 LINE L2 -62 3210 2823 21 0 0 0 chr21 8661623 8661644 -26245926 + AT_rich Low_complexity Low_complexity 1 21 0 1939 116 61 7 chr21 8662368 8662661 -26244909 + AluSx SINE Alu 2 310 -2 4796 98 19 23 chr21 8662979 8663760 -26243810 - L1PA10 LINE L1 0 6168 5436 3569 143 31 2 chr21 8663760 8664203 -26243367 + L1P LINE L1 4725 5193 -975 261 0 0 0 chr21 8664203 8664232 -26243338 + (CA)n Simple_repeat Simple_repeat 2 30 0 3569 143 31 2 chr21 8664232 8664473 -26243097 + L1P LINE L1 5193 5426 -742 1386 276 28 42 chr21 8665793 8666391 -26241179 + MER92B LTR ERV1 1 590 -46 21 57 0 0 chr21 8666690 8666725 -26240845 + AT_rich Low_complexity Low_complexity 1 35 0 204 212 0 45 chr21 8667185 8667251 -26240319 + T-rich Low_complexity Low_complexity 1 63 0 1555 188 36 21 chr21 8668993 8669377 -26238193 + L1MB8 LINE L1 5789 6178 0 1445 208 0 30 chr21 8669400 8669698 -26237872 + AluJo SINE Alu 1 289 -23 224 211 0 0 chr21 8670211 8670263 -26237307 + (CA)n Simple_repeat Simple_repeat 2 53 0 2221 95 10 0 chr21 8670263 8670557 -26237013 - AluSp SINE Alu -16 297 1 180 0 0 0 chr21 8670563 8670583 -26236987 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 2255 113 0 0 chr21 8671466 8671775 -26235795 + AluSg SINE Alu 1 309 -1 1271 251 84 44 chr21 8672327 8673026 -26234544 - MER21B LTR ERV1 -79 784 21 2077 100 0 4 chr21 8673027 8673307 -26234263 - AluSg SINE Alu -9 301 23 874 280 49 36 chr21 8673445 8673749 -26233821 + MER92A LTR ERV1 3 310 -102 25 51 0 0 chr21 8674133 8674172 -26233398 + AT_rich Low_complexity Low_complexity 1 39 0 358 208 9 38 chr21 8675070 8675176 -26232394 + 7SK RNA RNA 1 103 -90 242 198 111 49 chr21 8676267 8676348 -26231222 + L3 LINE CR1 1484 1569 -8 373 362 67 22 chr21 8676713 8677025 -26230545 + L2 LINE L2 2560 2885 -429 21 71 0 0 chr21 8677827 8677869 -26229701 + AT_rich Low_complexity Low_complexity 1 42 0 1422 210 10 32 chr21 8677903 8678212 -26229358 + AluJb SINE Alu 1 302 -10 6821 139 20 18 chr21 8678249 8680023 -26227547 + L1MA1 LINE L1 4522 6302 0 239 351 61 0 chr21 8680299 8680413 -26227157 + L2 LINE L2 3193 3313 0 818 234 11 16 chr21 8683374 8683558 -26224012 + MER2 DNA MER2_type 1 183 -161 8377 146 44 19 chr21 8683556 8684972 -26222598 - Tigger2 DNA MER2_type -6 2712 1262 5267 168 10 44 chr21 8684953 8685043 -26222527 - Tigger2 DNA MER2_type -1730 988 896 1936 125 4 0 chr21 8685043 8685324 -26222246 - AluY SINE Alu -29 282 1 5267 168 10 44 chr21 8685324 8685782 -26221788 - Tigger2 DNA MER2_type -1822 896 489 2288 100 0 0 chr21 8685782 8686082 -26221488 - AluSc SINE Alu -9 300 1 5267 168 10 44 chr21 8686082 8686555 -26221015 - Tigger2 DNA MER2_type -2229 489 1 2230 88 0 17 chr21 8686790 8687084 -26220486 + AluSc SINE Alu 1 289 -20 32 0 0 0 chr21 8687281 8687313 -26220257 + AT_rich Low_complexity Low_complexity 1 32 0 203 255 20 0 chr21 8687373 8687424 -26220146 - L2 LINE L2 -15 3257 3206 549 364 46 4 chr21 8687790 8688029 -26219541 + MIR SINE MIR 11 259 -3 991 160 0 78 chr21 8689194 8689304 -26218266 + MLT1E2 LTR MaLR 1 89 -301 1922 157 7 0 chr21 8689304 8689604 -26217966 + AluSq SINE Alu 1 302 -11 991 160 0 78 chr21 8689604 8689699 -26217871 + MLT1E2 LTR MaLR 89 190 -200 1111 168 62 0 chr21 8689892 8690101 -26217469 - Tigger1 DNA MER2_type -5 2413 2192 928 164 0 7 chr21 8690098 8690250 -26217320 - Tigger1 DNA MER2_type -2267 151 1 204 119 71 0 chr21 8690305 8690347 -26217223 + GA-rich Low_complexity Low_complexity 3 47 0 1401 277 75 16 chr21 8690347 8690733 -26216837 + MLT1E2 LTR MaLR 215 623 -3 207 0 0 0 chr21 8692468 8692491 -26215079 + (TG)n Simple_repeat Simple_repeat 2 24 0 40 49 0 0 chr21 8692846 8692907 -26214663 + AT_rich Low_complexity Low_complexity 1 61 0 2576 43 0 0 chr21 8692975 8693280 -26214290 + AluY SINE Alu 1 305 -6 1481 234 27 40 chr21 8694829 8695230 -26212340 + MSTD LTR MaLR 1 396 0 372 311 16 0 chr21 8695293 8695415 -26212155 - L1ME1 LINE L1 -9 6157 6034 412 279 31 12 chr21 8695432 8695593 -26211977 - L1ME1 LINE L1 -279 5899 5736 343 36 0 36 chr21 8695645 8695700 -26211870 + (TA)n Simple_repeat Simple_repeat 1 53 0 329 62 21 0 chr21 8695708 8695756 -26211814 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1523 174 16 0 chr21 8695800 8696053 -26211517 - Tigger3(Golem) DNA MER2_type -2 3027 2771 7464 238 44 18 chr21 8696111 8699271 -26208299 - L1MC1 LINE L1 -76 6537 3276 1624 198 3 0 chr21 8699271 8699599 -26207971 + AluJb SINE Alu 1 329 0 7464 238 44 18 chr21 8699599 8699938 -26207632 - L1MC1 LINE L1 -3337 3276 2947 1406 185 0 4 chr21 8699959 8700197 -26207373 - AluJb SINE Alu -75 237 1 1077 282 8 3 chr21 8700271 8700640 -26206930 - L1MC1 LINE L1 -3548 2878 2508 4939 159 63 6 chr21 8700634 8701787 -26205783 + L1PA15 LINE L1 4954 6164 -1 2326 203 39 34 chr21 8701797 8702492 -26205078 - L1MC1 LINE L1 -3948 2478 1828 2499 165 14 27 chr21 8702492 8703008 -26204562 - L1MA9 LINE L1 0 6312 5804 824 153 45 0 chr21 8703009 8703166 -26204404 - L1MA9 LINE L1 -804 5508 5345 536 241 0 15 chr21 8703167 8703304 -26204266 + L1M4 LINE L1 4863 4997 -1149 4688 192 48 44 chr21 8703422 8704588 -26202982 - L1MC1 LINE L1 -4532 1894 578 1631 231 27 12 chr21 8704601 8705114 -26202456 - L1MC1 LINE L1 -5816 610 33 21 36 0 0 chr21 8705266 8705294 -26202276 + AT_rich Low_complexity Low_complexity 1 28 0 250 157 45 11 chr21 8705329 8705418 -26202152 + (TA)n Simple_repeat Simple_repeat 1 92 0 25 65 0 0 chr21 8705482 8705528 -26202042 + AT_rich Low_complexity Low_complexity 1 46 0 211 262 0 0 chr21 8705624 8705666 -26201904 + (CA)n Simple_repeat Simple_repeat 2 43 0 359 351 35 12 chr21 8705829 8706000 -26201570 + MIR SINE MIR 88 262 0 4324 90 42 14 chr21 8707261 8707903 -26199667 + LTR30 LTR ERV1 63 722 0 391 238 0 0 chr21 8709350 8709434 -26198136 - AluSq SINE Alu -99 204 121 6762 66 6 9 chr21 8709474 8710979 -26196591 - L1PA7 LINE L1 -27 6127 4629 30 27 0 0 chr21 8711417 8711454 -26196116 + AT_rich Low_complexity Low_complexity 1 37 0 5265 100 1 3 chr21 8711498 8712245 -26195325 - L1PA8 LINE L1 -4 6168 5423 25 0 0 0 chr21 8712851 8712876 -26194694 + AT_rich Low_complexity Low_complexity 1 25 0 258 179 0 0 chr21 8713462 8713518 -26194052 + GA-rich Low_complexity Low_complexity 1 56 0 289 79 0 0 chr21 8713710 8713748 -26193822 + MADE1 DNA Mariner 1 38 -42 188 237 0 0 chr21 8714013 8714051 -26193519 + MIR SINE MIR 25 62 -200 306 278 8 40 chr21 8714114 8714240 -26193330 - MER104 DNA MER2_type -1773 122 1 22 70 0 0 chr21 8714435 8714478 -26193092 + AT_rich Low_complexity Low_complexity 1 43 0 4795 174 84 15 chr21 8715209 8716163 -26191407 - LTR28 LTR ERV1 0 1020 1 22 56 0 0 chr21 8717051 8717087 -26190483 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 8719008 8719046 -26188524 + AT_rich Low_complexity Low_complexity 1 38 0 23 78 0 0 chr21 8720122 8720173 -26187397 + AT_rich Low_complexity Low_complexity 1 51 0 425 257 52 22 chr21 8721256 8721392 -26186178 - L2 LINE L2 -1 3312 3173 187 344 93 11 chr21 8721561 8721744 -26185826 - L2 LINE L2 -340 2974 2777 2306 112 56 13 chr21 8721744 8722138 -26185432 - LTR12 LTR ERV1 -237 1523 77 2070 110 0 0 chr21 8724215 8724496 -26183074 - AluSc SINE Alu -28 281 1 1955 164 38 35 chr21 8725613 8726040 -26181530 - LTR23 LTR ERV1 0 437 10 25 0 0 0 chr21 8726154 8726179 -26181391 + AT_rich Low_complexity Low_complexity 1 25 0 862 157 0 0 chr21 8726466 8726606 -26180964 - FRAM SINE Alu -7 169 30 201 147 0 0 chr21 8726723 8726757 -26180813 + (TATG)n Simple_repeat Simple_repeat 3 36 0 4899 133 11 44 chr21 8726820 8727722 -26179848 + MER4D LTR ERV1 1 872 0 1611 236 119 33 chr21 8728119 8728391 -26179179 - MLT1F1 LTR MaLR 0 567 320 1910 159 36 36 chr21 8728391 8728755 -26178815 - THE1B LTR MaLR 0 364 1 1611 236 119 33 chr21 8728755 8729004 -26178566 - MLT1F1 LTR MaLR -247 320 1 709 279 146 7 chr21 8731144 8731424 -26176146 + MLT1C LTR MaLR 146 464 -3 23 54 0 0 chr21 8732885 8732922 -26174648 + AT_rich Low_complexity Low_complexity 1 37 0 211 111 0 28 chr21 8733731 8733767 -26173803 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 8734314 8734335 -26173235 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr21 8735429 8735454 -26172116 + (TC)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 8735486 8735507 -26172063 + AT_rich Low_complexity Low_complexity 1 21 0 285 330 11 0 chr21 8735583 8735671 -26171899 + CT-rich Low_complexity Low_complexity 1 89 0 2035 120 7 13 chr21 8736287 8736586 -26170984 + AluSx SINE Alu 1 297 -15 962 128 0 0 chr21 8737019 8737152 -26170418 + AluSp SINE Alu 3 135 -178 282 332 113 36 chr21 8737173 8737447 -26170123 + L2 LINE L2 1743 2037 -1277 320 338 31 12 chr21 8737494 8737654 -26169916 + L2 LINE L2 2127 2289 -1025 283 305 65 25 chr21 8739048 8739116 -26168454 - MERVL LTR ERVL -992 4493 4286 2218 137 24 19 chr21 8739427 8739800 -26167770 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr21 8739866 8739890 -26167680 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 265 287 27 87 chr21 8740818 8740968 -26166602 - ERVL LTR ERVL -4230 1534 1394 286 176 35 71 chr21 8741072 8741157 -26166413 - ERVL LTR ERVL -4044 952 871 487 96 108 0 chr21 8741941 8742024 -26165546 - MLT1B LTR MaLR -283 107 16 2160 162 14 0 chr21 8742434 8742793 -26164777 - THE1B LTR MaLR 0 364 1 1152 281 52 97 chr21 8745499 8745753 -26161817 + L2 LINE L2 1876 2140 -1174 2072 157 54 40 chr21 8745753 8746179 -26161391 - MSTB1 LTR MaLR 0 432 1 1152 281 52 97 chr21 8746179 8746758 -26160812 + L2 LINE L2 2140 2671 -643 2521 180 19 17 chr21 8746758 8747231 -26160339 - Tigger5 DNA MER2_type -1 2322 1849 1904 114 2 119 chr21 8747261 8747663 -26159907 - THE1A LTR MaLR 0 355 1 2411 93 3 0 chr21 8747667 8747991 -26159579 - THE1A-int LTR MaLR -4 1576 1252 872 188 59 55 chr21 8748014 8748269 -26159301 + THE1C LTR MaLR 120 375 0 3146 85 6 60 chr21 8748272 8748772 -26158798 + THE1-int LTR MaLR 3 478 -1102 428 212 13 4 chr21 8749178 8749423 -26158147 + (TA)n Simple_repeat Simple_repeat 1 247 0 1471 177 14 22 chr21 8749424 8749701 -26157869 + AluJb SINE Alu 1 275 -37 341 90 103 0 chr21 8749718 8749873 -26157697 + (TA)n Simple_repeat Simple_repeat 2 172 0 259 105 51 38 chr21 8749881 8750051 -26157519 + (TATAA)n Simple_repeat Simple_repeat 1 172 0 23587 171 19 19 chr21 8751142 8753631 -26153939 + L1PA10 LINE L1 3 2491 -3992 2178 106 3 3 chr21 8753631 8753934 -26153636 + AluY SINE Alu 1 303 -8 23587 171 19 19 chr21 8753934 8757791 -26149779 + L1PA10 LINE L1 2491 6481 -2 22 35 0 0 chr21 8758109 8758138 -26149432 + AT_rich Low_complexity Low_complexity 1 29 0 1056 218 55 117 chr21 8758758 8759125 -26148445 + MLT1C LTR MaLR 59 396 -71 2186 118 0 0 chr21 8759125 8759422 -26148148 - AluSg1 SINE Alu -12 297 1 1056 218 55 117 chr21 8759422 8759490 -26148080 + MLT1C LTR MaLR 396 467 0 23 0 0 0 chr21 8759555 8759578 -26147992 + AT_rich Low_complexity Low_complexity 1 23 0 2119 106 27 0 chr21 8760076 8760369 -26147201 - AluSg1 SINE Alu -8 301 1 314 259 0 36 chr21 8760605 8760717 -26146853 - LTR41 LTR ERVL -12 761 654 1930 174 36 72 chr21 8761260 8761453 -26146117 + MLT2A2 LTR ERVL 1 199 -355 2488 34 41 0 chr21 8761453 8761745 -26145825 + AluY SINE Alu 1 304 -7 1930 174 36 72 chr21 8761745 8762131 -26145439 + MLT2A2 LTR ERVL 199 554 0 277 174 0 0 chr21 8762156 8762202 -26145368 - LTR41 LTR ERVL -622 151 106 21 0 0 0 chr21 8763136 8763157 -26144413 + AT_rich Low_complexity Low_complexity 1 21 0 330 339 16 0 chr21 8763328 8763449 -26144121 + MIR SINE MIR 18 140 -122 366 23 0 0 chr21 8764170 8764213 -26143357 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 354 0 0 chr21 8764488 8764570 -26143000 + MIR SINE MIR 179 260 -2 1974 145 0 16 chr21 8764816 8765133 -26142437 + AluJb SINE Alu 1 312 0 198 143 0 0 chr21 8765672 8765707 -26141863 + (TG)n Simple_repeat Simple_repeat 1 35 0 1145 190 9 22 chr21 8766240 8766472 -26141098 - L1MC1 LINE L1 -2 6331 6103 213 288 0 14 chr21 8767689 8767762 -26139808 + A-rich Low_complexity Low_complexity 2 73 0 357 24 0 0 chr21 8767771 8767813 -26139757 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 174 0 29 chr21 8767909 8767978 -26139592 + (TA)n Simple_repeat Simple_repeat 2 68 0 319 322 0 0 chr21 8768266 8768409 -26139161 + L1MC4 LINE L1 6601 6703 -1339 333 0 0 0 chr21 8768409 8768446 -26139124 + (GA)n Simple_repeat Simple_repeat 2 38 0 1668 167 0 42 chr21 8769044 8769350 -26138220 + AluJb SINE Alu 4 296 -16 3315 77 13 24 chr21 8769813 8770269 -26137301 + MLT2A2 LTR ERVL 3 453 0 376 312 38 32 chr21 8770538 8770695 -26136875 - MIR SINE MIR -64 198 41 325 291 36 0 chr21 8770901 8771011 -26136559 + MIR SINE MIR 64 177 -85 428 314 85 27 chr21 8772368 8772626 -26134944 - L2 LINE L2 0 3313 3041 22 0 0 0 chr21 8772705 8772727 -26134843 + AT_rich Low_complexity Low_complexity 1 22 0 3050 196 57 39 chr21 8772828 8773315 -26134255 - L1MC2 LINE L1 -11 6333 5824 2197 113 3 3 chr21 8773315 8773615 -26133955 - AluSx SINE Alu -10 302 3 3050 196 57 39 chr21 8773615 8773931 -26133639 - L1MC2 LINE L1 -520 5824 5515 226 214 0 0 chr21 8773930 8773972 -26133598 - L1MC2 LINE L1 -2486 5556 5515 1335 178 8 12 chr21 8773971 8774261 -26133309 - L1MC2 LINE L1 -788 5556 5283 348 156 16 0 chr21 8774294 8774358 -26133212 - L1MC2 LINE L1 -878 5268 5204 5006 259 54 14 chr21 8774361 8776356 -26131214 - L1MC2 LINE L1 -1207 4939 2865 23 74 0 42 chr21 8777582 8777677 -26129893 + AT_rich Low_complexity Low_complexity 1 91 0 1584 296 55 11 chr21 8777850 8778474 -26129096 + L1MA9 LINE L1 12 698 -5257 481 186 0 59 chr21 8778480 8778598 -26128972 - L1 LINE L1 -1030 5116 5006 1117 233 47 53 chr21 8778798 8779388 -26128182 + L1MA9 LINE L1 686 1272 -4693 4402 164 33 76 chr21 8779399 8780726 -26126844 + L1MA9 LINE L1 4530 5760 -440 2109 69 0 0 chr21 8780726 8781001 -26126569 + L1PA5 LINE L1 5878 6152 -2 4402 164 33 76 chr21 8781001 8781423 -26126147 + L1MA9 LINE L1 5760 6199 -1 21 36 0 0 chr21 8782877 8782905 -26124665 + AT_rich Low_complexity Low_complexity 1 28 0 285 422 58 0 chr21 8783194 8783367 -26124203 + MER91A DNA MER1_type 2 184 -12 40 49 0 0 chr21 8783815 8783876 -26123694 + AT_rich Low_complexity Low_complexity 1 61 0 2508 184 56 26 chr21 8783967 8784020 -26123550 - L1MA7 LINE L1 -8 6283 6233 225 0 0 0 chr21 8784020 8784045 -26123525 + (TA)n Simple_repeat Simple_repeat 1 25 0 2508 184 56 26 chr21 8784045 8784567 -26123003 - L1MA7 LINE L1 -58 6233 5691 29 60 0 0 chr21 8784879 8784929 -26122641 + AT_rich Low_complexity Low_complexity 1 50 0 440 111 85 0 chr21 8786886 8787039 -26120531 + (TA)n Simple_repeat Simple_repeat 1 166 0 2056 179 46 113 chr21 8788532 8789080 -26118490 + MLT2B2 LTR ERVL 5 515 0 24 67 0 0 chr21 8789466 8789511 -26118059 + AT_rich Low_complexity Low_complexity 1 45 0 572 288 58 89 chr21 8790194 8790576 -26116994 + LTR33A LTR ERVL 1 370 -153 183 100 0 0 chr21 8790865 8790895 -26116675 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 193 346 39 0 chr21 8792828 8792906 -26114664 + L2 LINE L2 3230 3310 -3 2582 242 40 2 chr21 8793394 8794014 -26113556 - MER82 DNA MER2_type 0 653 10 2201 81 56 0 chr21 8794018 8794302 -26113268 + AluY SINE Alu 1 300 -11 1304 224 61 20 chr21 8794479 8794774 -26112796 + AluJo SINE Alu 1 307 -5 13197 160 34 6 chr21 8795007 8797336 -26110234 + Tigger1 DNA MER2_type 24 2417 -1 29 60 0 0 chr21 8797580 8797630 -26109940 + AT_rich Low_complexity Low_complexity 1 50 0 554 168 19 0 chr21 8799154 8799261 -26108309 - L1MB1 LINE L1 -271 5897 5789 291 121 86 0 chr21 8799262 8799320 -26108250 + L1MB1 LINE L1 6099 6161 -28 21 0 0 0 chr21 8800944 8800965 -26106605 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr21 8801570 8801621 -26105949 + AT_rich Low_complexity Low_complexity 1 51 0 565 273 81 20 chr21 8802904 8803102 -26104468 - LTR33 LTR ERVL -236 285 76 422 217 77 86 chr21 8803167 8803504 -26104066 + L1M4 LINE L1 4511 4844 -1302 546 278 71 39 chr21 8803560 8803996 -26103574 - Charlie2 DNA MER1_type -524 2338 1889 1127 115 19 0 chr21 8805411 8805568 -26102002 + AluSg/x SINE Alu 130 289 -21 24 0 0 0 chr21 8805802 8805826 -26101744 + AT_rich Low_complexity Low_complexity 1 24 0 823 153 0 0 chr21 8805922 8806053 -26101517 + FLAM_A SINE Alu 3 133 0 688 276 22 22 chr21 8806270 8806498 -26101072 + MIR SINE MIR 6 233 -29 783 295 4 18 chr21 8806584 8806811 -26100759 - MER58A DNA MER1_type 0 224 1 2155 89 21 3 chr21 8807774 8808056 -26099514 - AluSq SINE Alu -26 287 1 207 204 0 0 chr21 8808349 8808393 -26099177 + T-rich Low_complexity Low_complexity 1 44 0 1079 0 62 0 chr21 8808960 8809106 -26098464 + (TTTTA)n Simple_repeat Simple_repeat 5 159 0 1987 121 0 14 chr21 8809108 8809398 -26098172 - AluSx SINE Alu -26 286 1 780 216 72 14 chr21 8809820 8810028 -26097542 - L1MD2 LINE L1 -3 6356 6137 335 256 0 35 chr21 8810029 8810115 -26097455 - L1MD2 LINE L1 -198 6161 6079 2754 252 49 53 chr21 8810118 8811876 -26095694 - L1MD2 LINE L1 -696 5546 3758 2369 92 0 0 chr21 8811876 8812180 -26095390 + AluSg SINE Alu 1 304 -6 2754 252 49 53 chr21 8812180 8812756 -26094814 - L1MD2 LINE L1 -2484 3758 3181 2233 113 71 11 chr21 8813034 8813388 -26094182 - THE1C LTR MaLR 0 375 1 2392 151 11 0 chr21 8813782 8814153 -26093417 - THE1C LTR MaLR 0 375 1 2934 67 0 0 chr21 8814324 8814700 -26092870 - L1PA5 LINE L1 -1 6153 5778 1110 222 19 5 chr21 8815896 8816112 -26091458 - MLT1A1 LTR MaLR 0 365 147 1021 191 0 47 chr21 8816114 8816329 -26091241 - L1P LINE L1 -2208 3938 3734 965 138 108 15 chr21 8816328 8816531 -26091039 - L1P4 LINE L1 -691 6178 5957 2597 93 6 0 chr21 8816535 8816888 -26090682 - THE1A LTR MaLR 0 355 1 1955 89 4 4 chr21 8816888 8817157 -26090413 - THE1A-int LTR MaLR 0 1580 1312 3999 95 0 0 chr21 8817152 8817698 -26089872 - THE1A-int LTR MaLR -1034 546 1 2549 96 3 25 chr21 8817698 8818061 -26089509 - THE1A LTR MaLR 0 355 1 11770 226 32 20 chr21 8818063 8819419 -26088151 - L1P4 LINE L1 -894 5955 4617 300 27 0 0 chr21 8819419 8819456 -26088114 + (TG)n Simple_repeat Simple_repeat 1 37 0 11770 226 32 20 chr21 8819456 8819664 -26087906 - L1P4 LINE L1 -2232 4617 4413 2491 105 8 0 chr21 8819664 8820016 -26087554 - THE1A LTR MaLR 0 355 1 10655 117 25 0 chr21 8820016 8821558 -26086012 - THE1A-int LTR MaLR 0 1580 1 2228 91 109 0 chr21 8821558 8821878 -26085692 - THE1A LTR MaLR 0 355 1 11770 226 32 20 chr21 8821878 8822555 -26085015 - L1P4 LINE L1 -2436 4413 3746 1514 209 150 3 chr21 8822555 8822928 -26084642 + MSTA LTR MaLR 1 428 0 11770 226 32 20 chr21 8822928 8824038 -26083532 - L1P4 LINE L1 -3103 3746 2651 1376 240 21 3 chr21 8824038 8824325 -26083245 + AluJb SINE Alu 1 292 -10 11770 226 32 20 chr21 8824325 8825575 -26081995 - L1P4 LINE L1 -4198 2651 1268 1099 318 82 78 chr21 8825902 8826946 -26080624 - L1PA12 LINE L1 -5792 1793 10 240 59 0 0 chr21 8826959 8826993 -26080577 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr21 8827589 8827624 -26079946 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr21 8828160 8828197 -26079373 + AT_rich Low_complexity Low_complexity 1 37 0 1766 169 21 24 chr21 8828237 8828609 -26078961 - THE1C LTR MaLR 0 375 5 9519 139 35 12 chr21 8828614 8830158 -26077412 - THE1C-int LTR MaLR -1 1579 1 1997 140 26 34 chr21 8830158 8830536 -26077034 - THE1C LTR MaLR 0 375 1 1376 115 46 5 chr21 8831081 8831298 -26076272 + MER30 DNA MER1_type 5 230 0 23 0 0 87 chr21 8831442 8831466 -26076104 + AT_rich Low_complexity Low_complexity 1 21 -21 2254 77 3 14 chr21 8831466 8831763 -26075807 - AluSq SINE Alu -19 294 1 23 0 0 87 chr21 8831763 8831784 -26075786 + AT_rich Low_complexity Low_complexity 21 42 0 531 333 80 40 chr21 8832067 8832493 -26075077 - LTR16A1 LTR ERVL -14 443 1 2290 102 0 0 chr21 8833395 8833700 -26073870 - AluSx SINE Alu -7 305 1 25 65 0 0 chr21 8834705 8834751 -26072819 + AT_rich Low_complexity Low_complexity 1 46 0 500 325 64 13 chr21 8834918 8835152 -26072418 + Charlie8 DNA MER1_type 12 257 -2160 21 36 0 0 chr21 8835646 8835674 -26071896 + AT_rich Low_complexity Low_complexity 1 28 0 342 284 67 67 chr21 8835758 8836099 -26071471 - L1ME LINE L1 -297 5824 5484 190 325 8 114 chr21 8836244 8836367 -26071203 + MIR SINE MIR 5 114 -148 22 35 0 0 chr21 8836423 8836452 -26071118 + AT_rich Low_complexity Low_complexity 1 29 0 1080 30 0 0 chr21 8836453 8836584 -26070986 - L1PA6 LINE L1 -2 6152 6022 299 129 6 48 chr21 8836686 8836707 -26070863 - Alu SINE Alu -260 42 60 1656 117 0 0 chr21 8836707 8836938 -26070632 - AluSg/x SINE Alu -1 309 79 299 129 6 48 chr21 8836938 8836996 -26070574 - Alu SINE Alu -241 61 2 2004 185 5 16 chr21 8838689 8839056 -26068514 - MLT1A1 LTR MaLR -2 363 1 21 57 0 0 chr21 8839300 8839335 -26068235 + AT_rich Low_complexity Low_complexity 1 35 0 399 182 0 0 chr21 8839521 8839598 -26067972 + (TA)n Simple_repeat Simple_repeat 2 78 0 26 64 0 0 chr21 8839615 8839662 -26067908 + AT_rich Low_complexity Low_complexity 1 47 0 1580 273 136 4 chr21 8839882 8840417 -26067153 - MLT1E2 LTR MaLR 0 626 21 4861 177 36 12 chr21 8840468 8841433 -26066137 - L1MC2 LINE L1 -3 6341 5354 2157 44 7 11 chr21 8842898 8843168 -26064402 - AluY SINE Alu -9 302 34 661 182 157 6 chr21 8843275 8843434 -26064136 - MSTA LTR MaLR -245 183 1 24 32 0 0 chr21 8843913 8843944 -26063626 + AT_rich Low_complexity Low_complexity 1 31 0 38 68 0 0 chr21 8844483 8844556 -26063014 + AT_rich Low_complexity Low_complexity 1 73 0 27 29 0 0 chr21 8844753 8844787 -26062783 + AT_rich Low_complexity Low_complexity 1 34 0 778 266 57 54 chr21 8845453 8845787 -26061783 - L1MC4a LINE L1 -1868 5940 5606 28 48 0 0 chr21 8845828 8845870 -26061700 + AT_rich Low_complexity Low_complexity 1 42 0 260 263 33 53 chr21 8849218 8849370 -26058200 + L1P LINE L1 2913 3061 -3085 262 165 10 52 chr21 8849439 8849536 -26058034 + L1M4 LINE L1 3159 3251 -2895 329 229 25 41 chr21 8849855 8849977 -26057593 + L1M4 LINE L1 4374 4493 -1653 1704 142 59 14 chr21 8849980 8850268 -26057302 + AluSx SINE Alu 1 301 -11 563 227 103 31 chr21 8850348 8850440 -26057130 + L1MC3 LINE L1 6414 6498 -1287 1996 199 26 26 chr21 8850440 8850866 -26056704 + MSTB LTR MaLR 1 426 0 563 227 103 31 chr21 8850866 8850967 -26056603 + L1MC3 LINE L1 6498 6621 -1164 1310 248 88 29 chr21 8850990 8851446 -26056124 + MER74B LTR ERVL 66 548 -74 4363 204 39 48 chr21 8851514 8852351 -26055219 + L1MC3 LINE L1 6631 7457 -328 531 261 117 67 chr21 8852351 8852552 -26055018 + MLT1D LTR MaLR 3 192 -313 2099 138 0 0 chr21 8852552 8852864 -26054706 - AluSx SINE Alu 0 312 1 531 261 117 67 chr21 8852864 8853141 -26054429 + MLT1D LTR MaLR 192 505 0 4363 204 39 48 chr21 8853141 8853438 -26054132 + L1MC3 LINE L1 7457 7755 -30 27 29 0 0 chr21 8853728 8853762 -26053808 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 8853873 8853901 -26053669 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr21 8853978 8854000 -26053570 + (T)n Simple_repeat Simple_repeat 1 22 0 244 121 0 0 chr21 8854236 8854269 -26053301 + U2 snRNA snRNA 1 33 -155 1795 191 70 31 chr21 8854586 8855120 -26052450 - MLT2A2 LTR ERVL 0 554 1 883 249 26 0 chr21 8855127 8855320 -26052250 + MLT1E2 LTR MaLR 318 515 -111 3667 177 118 27 chr21 8856016 8857061 -26050509 - MER52C LTR ERV1 0 1278 1 22 0 0 0 chr21 8857323 8857345 -26050225 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr21 8858060 8858086 -26049484 + (CA)n Simple_repeat Simple_repeat 1 26 0 2307 70 0 10 chr21 8858206 8858507 -26049063 + AluY SINE Alu 1 298 -13 194 215 0 15 chr21 8859866 8859931 -26047639 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 25 31 0 0 chr21 8860502 8860534 -26047036 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr21 8860567 8860588 -26046982 + AT_rich Low_complexity Low_complexity 1 21 0 962 282 108 22 chr21 8860615 8861161 -26046409 - L1ME3 LINE L1 -82 6080 5488 669 292 49 26 chr21 8861225 8861694 -26045876 - L1ME3 LINE L1 -748 5398 4919 601 270 72 35 chr21 8861716 8862034 -26045536 - L1ME3 LINE L1 -1276 4870 4541 2396 43 0 0 chr21 8863480 8863798 -26043772 + AluY SINE Alu 1 318 0 563 106 0 0 chr21 8864423 8864508 -26043062 - L1PA8 LINE L1 -1 6171 6087 2630 40 0 0 chr21 8865973 8866276 -26041294 + AluY SINE Alu 2 304 -7 30 27 0 0 chr21 8866422 8866459 -26041111 + AT_rich Low_complexity Low_complexity 1 37 0 2244 82 13 13 chr21 8867142 8867447 -26040123 + AluY SINE Alu 1 305 -6 2034 131 152 8 chr21 8867577 8867951 -26039619 + MSTA LTR MaLR 1 428 0 187 206 0 0 chr21 8869286 8869320 -26038250 - L2 LINE L2 -12 3301 3268 333 0 0 0 chr21 8871511 8871548 -26036022 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr21 8871771 8871793 -26035777 + AT_rich Low_complexity Low_complexity 1 22 0 319 301 122 39 chr21 8872014 8872170 -26035400 + MER5B DNA MER1_type 4 172 -6 225 0 0 0 chr21 8872709 8872734 -26034836 + (TA)n Simple_repeat Simple_repeat 2 26 0 180 77 0 0 chr21 8875130 8875156 -26032414 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1546 77 15 58 chr21 8875160 8875419 -26032151 - L1MA1 LINE L1 -10 6292 6045 1981 128 0 20 chr21 8875508 8875812 -26031758 + AluSx SINE Alu 1 298 -14 1369 178 0 8 chr21 8877345 8877587 -26029983 - L1PA16 LINE L1 -9 6157 5918 344 177 0 16 chr21 8877588 8877650 -26029920 + L1PA16 LINE L1 6078 6138 -28 267 154 39 0 chr21 8877655 8877707 -26029863 + L1PA16 LINE L1 5918 5971 -195 983 148 13 18 chr21 8877699 8877885 -26029685 - L1PA16 LINE L1 -247 5919 5726 381 369 52 9 chr21 8877944 8878177 -26029393 - MIR SINE MIR -2 260 18 327 244 65 54 chr21 8878339 8878507 -26029063 + L1MDa LINE L1 1871 2040 -4500 24 32 0 0 chr21 8878717 8878748 -26028822 + AT_rich Low_complexity Low_complexity 1 31 0 1630 188 10 3 chr21 8879091 8879384 -26028186 + AluJo SINE Alu 8 302 -10 1730 136 3 31 chr21 8879820 8880106 -26027464 + AluJb SINE Alu 14 291 -21 484 132 13 0 chr21 8881351 8881427 -26026143 + MADE1 DNA Mariner 3 79 -1 954 262 84 80 chr21 8881429 8881794 -26025776 - MLT1H1 LTR MaLR -57 533 165 2184 82 3 0 chr21 8881794 8882121 -26025449 - AluY SINE Alu 0 328 1 954 262 84 80 chr21 8882121 8882278 -26025292 - MLT1H1 LTR MaLR -425 165 10 2169 114 0 3 chr21 8884480 8884778 -26022792 - AluSx SINE Alu -15 297 1 22 0 0 0 chr21 8884904 8884926 -26022644 + AT_rich Low_complexity Low_complexity 1 22 0 43 81 0 0 chr21 8885007 8885106 -26022464 + AT_rich Low_complexity Low_complexity 1 99 0 633 219 0 0 chr21 8885295 8885414 -26022156 - FLAM_A SINE Alu -11 122 4 2201 249 88 78 chr21 8886127 8887528 -26020042 + L1MB8 LINE L1 587 1990 -4656 1906 145 3 7 chr21 8887528 8887824 -26019746 - AluSx SINE Alu -17 295 1 2201 249 88 78 chr21 8887824 8887933 -26019637 + L1MB8 LINE L1 1990 2096 -4550 2005 248 74 41 chr21 8888089 8889098 -26018472 + L1MB8 LINE L1 3166 4208 -2436 1379 256 30 46 chr21 8889125 8889625 -26017945 + LTR55 LTR ERV 52 543 -5 1814 259 29 28 chr21 8889635 8890249 -26017321 + L1MB8 LINE L1 4217 4831 -1813 2695 224 41 61 chr21 8890235 8891296 -26016274 + L1MB8 LINE L1 5633 6674 -2 406 289 28 0 chr21 8891498 8891618 -26015952 + MIR SINE MIR 28 151 -57 24 32 0 0 chr21 8892435 8892466 -26015104 + AT_rich Low_complexity Low_complexity 1 31 0 1978 133 0 3 chr21 8893495 8893808 -26013762 + AluSx SINE Alu 1 312 0 228 186 23 0 chr21 8894062 8894105 -26013465 - L2 LINE L2 -3 3310 3267 1923 137 0 0 chr21 8895478 8895755 -26011815 + AluSx SINE Alu 21 297 -15 4126 120 5 0 chr21 8896440 8897038 -26010532 - L1PA10 LINE L1 -4 6164 5564 2231 118 0 0 chr21 8897856 8898169 -26009401 - AluSq SINE Alu 0 313 1 2186 153 109 10 chr21 8899015 8899426 -26008144 - LTR47A LTR ERVL 0 452 1 544 284 6 25 chr21 8899859 8900021 -26007549 + MIR3 SINE MIR 47 205 -3 2368 88 7 0 chr21 8901496 8901803 -26005767 + AluSq SINE Alu 3 311 -2 504 255 118 7 chr21 8902446 8902599 -26004971 - MLT1E2 LTR MaLR -374 252 83 180 77 0 0 chr21 8902652 8902678 -26004892 + (A)n Simple_repeat Simple_repeat 1 26 0 1924 122 58 92 chr21 8902728 8902908 -26004662 + LTR12 LTR ERV1 18 203 -468 2328 67 0 0 chr21 8902908 8903214 -26004356 + AluY SINE Alu 1 306 0 1924 122 58 92 chr21 8903214 8903467 -26004103 + LTR12 LTR ERV1 203 437 -234 246 181 0 96 chr21 8903782 8903876 -26003694 + L1MDa LINE L1 2541 2625 -3915 444 278 121 35 chr21 8903934 8904280 -26003290 + L1M4 LINE L1 3883 4258 -1888 339 202 71 10 chr21 8904331 8904430 -26003140 + L1M4 LINE L1 4324 4428 -1718 559 241 72 55 chr21 8904487 8904724 -26002846 + L1M4 LINE L1 4447 4687 -1459 1499 181 65 0 chr21 8904754 8905014 -26002556 - AluSg SINE Alu -33 277 1 458 256 56 31 chr21 8905016 8905176 -26002394 + L1M4 LINE L1 4682 4845 -1301 684 161 0 0 chr21 8905176 8905319 -26002251 + (TA)n Simple_repeat Simple_repeat 1 143 0 322 376 0 0 chr21 8905330 8905492 -26002078 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 324 0 0 0 chr21 8905509 8905545 -26002025 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr21 8905546 8905568 -26002002 + (TA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr21 8905616 8905637 -26001933 + (CA)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr21 8905683 8905704 -26001866 + (TA)n Simple_repeat Simple_repeat 2 22 0 183 80 0 0 chr21 8905776 8905801 -26001769 + (TA)n Simple_repeat Simple_repeat 1 25 0 192 152 0 0 chr21 8905936 8905969 -26001601 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 147 0 0 chr21 8905969 8906003 -26001567 + (CA)n Simple_repeat Simple_repeat 2 35 0 484 219 0 14 chr21 8906082 8906228 -26001342 + (TA)n Simple_repeat Simple_repeat 1 144 0 319 253 0 22 chr21 8906239 8906331 -26001239 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 288 0 0 0 chr21 8906383 8906415 -26001155 + (TA)n Simple_repeat Simple_repeat 1 32 0 186 133 0 0 chr21 8906492 8906522 -26001048 + (TA)n Simple_repeat Simple_repeat 1 30 0 383 208 0 52 chr21 8906652 8906748 -26000822 + L1MC4 LINE L1 6613 6703 -1339 192 200 0 0 chr21 8906748 8906788 -26000782 + (TA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr21 8906788 8906822 -26000748 + (CA)n Simple_repeat Simple_repeat 2 35 0 325 196 9 28 chr21 8906909 8907016 -26000554 + (TG)n Simple_repeat Simple_repeat 2 106 0 295 248 9 29 chr21 8907032 8907137 -26000433 + (TA)n Simple_repeat Simple_repeat 2 104 0 211 172 35 0 chr21 8907187 8907245 -26000325 + (TA)n Simple_repeat Simple_repeat 2 61 0 220 54 71 18 chr21 8907498 8907554 -26000016 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 271 164 41 57 chr21 8907603 8907725 -25999845 + (TATAA)n Simple_repeat Simple_repeat 2 121 0 192 158 0 0 chr21 8907915 8907953 -25999617 + GA-rich Low_complexity Low_complexity 1 38 0 1549 191 0 10 chr21 8908155 8908443 -25999127 + MER7A DNA MER2_type 64 346 0 1092 259 86 5 chr21 8908457 8908916 -25998654 - L1MEc LINE L1 -3625 3332 2888 344 278 89 97 chr21 8908962 8909332 -25998238 - L1MEc LINE L1 -4317 2821 2455 499 333 64 28 chr21 8909538 8909701 -25997869 - L1MEc LINE L1 -4645 2493 2337 183 42 0 0 chr21 8909701 8909725 -25997845 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 499 333 64 28 chr21 8909725 8910033 -25997537 - L1MEc LINE L1 -4801 2337 2005 723 263 42 16 chr21 8910056 8910368 -25997202 - L1MEc LINE L1 -5040 1815 1496 750 255 39 67 chr21 8910378 8910688 -25996882 + MLT2B3 LTR ERVL 1 342 -178 3139 142 24 30 chr21 8910695 8911229 -25996341 - MER61E LTR ERV1 -38 531 1 656 157 8 75 chr21 8911241 8911347 -25996223 + MLT2B1 LTR ERVL 362 459 -61 1254 154 121 77 chr21 8911347 8911776 -25995794 - LTR7 LTR ERV1 -2 448 1 656 157 8 75 chr21 8911776 8911803 -25995767 + MLT2B1 LTR ERVL 459 486 -34 499 287 40 76 chr21 8911860 8912163 -25995407 - L1MEc LINE L1 -5363 1496 1205 297 100 0 0 chr21 8912319 8912369 -25995201 + (TG)n Simple_repeat Simple_repeat 1 50 0 3658 30 0 0 chr21 8912838 8913272 -25994298 - L1PA4 LINE L1 -4 6151 5718 1876 192 76 46 chr21 8913335 8913725 -25993845 - MER34 LTR ERV1 0 542 132 2329 73 0 0 chr21 8913725 8914025 -25993545 - AluY SINE Alu -11 300 1 1876 192 76 46 chr21 8914025 8914135 -25993435 - MER34 LTR ERV1 -410 132 27 282 300 20 30 chr21 8914389 8914489 -25993081 - MER20B DNA MER1_type -638 146 48 269 196 0 0 chr21 8917764 8917815 -25989755 - L1MC4 LINE L1 -1344 6698 6648 503 184 29 0 chr21 8918009 8918112 -25989458 + L1MA9 LINE L1 6169 6274 -38 1969 132 3 3 chr21 8918316 8918605 -25988965 + AluSx SINE Alu 11 299 -13 21 0 0 0 chr21 8918689 8918710 -25988860 + AT_rich Low_complexity Low_complexity 1 21 0 306 169 0 0 chr21 8919010 8919075 -25988495 + (TG)n Simple_repeat Simple_repeat 2 66 0 697 180 16 0 chr21 8919092 8919220 -25988350 + FRAM SINE Alu 38 167 -9 240 314 51 29 chr21 8919993 8920130 -25987440 + L1MC/D LINE L1 5577 5716 -2092 279 157 0 0 chr21 8920396 8920447 -25987123 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr21 8920973 8920994 -25986576 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 8921758 8921792 -25985778 + AT_rich Low_complexity Low_complexity 1 34 0 2016 101 0 4 chr21 8921869 8922222 -25985348 - AluSc SINE Alu 0 358 7 5984 169 18 8 chr21 8922540 8923608 -25983962 + Tigger1 DNA MER2_type 1 1079 -1339 17585 182 25 6 chr21 8923629 8924925 -25982645 + L1MA1 LINE L1 461 1730 -5835 198 0 0 0 chr21 8924925 8924947 -25982623 + (GA)n Simple_repeat Simple_repeat 1 22 0 17585 182 25 6 chr21 8924947 8928022 -25979548 + L1MA1 LINE L1 1730 4918 -2647 4246 129 3 1 chr21 8928017 8928765 -25978805 + L1MA1 LINE L1 6546 7295 -426 632 175 0 0 chr21 8928762 8928876 -25978694 + L1M1 LINE L1 5584 5697 -1868 453 94 16 0 chr21 8928884 8928948 -25978622 - L1MA1 LINE L1 -415 5887 5823 2696 102 10 0 chr21 8928951 8929351 -25978219 + L1MA1 LINE L1 5899 6302 0 7452 157 7 45 chr21 8929366 8930171 -25977399 + Tigger1 DNA MER2_type 1061 1895 -523 1273 214 23 45 chr21 8930171 8930479 -25977091 - AluJo SINE Alu -9 303 3 7452 157 7 45 chr21 8930479 8930879 -25976691 + Tigger1 DNA MER2_type 1895 2208 -210 2008 106 4 7 chr21 8930879 8931154 -25976416 - AluSc SINE Alu -15 294 21 7452 157 7 45 chr21 8931154 8931358 -25976212 + Tigger1 DNA MER2_type 2208 2418 0 294 217 0 0 chr21 8931628 8931697 -25975873 + (TA)n Simple_repeat Simple_repeat 1 69 0 1323 185 102 10 chr21 8931920 8932223 -25975347 + THE1C LTR MaLR 1 331 -44 3309 131 14 19 chr21 8932225 8933166 -25974404 + THE1C-int LTR MaLR 596 1580 0 1864 121 55 71 chr21 8933166 8933547 -25974023 + THE1C LTR MaLR 1 375 0 323 303 45 32 chr21 8933745 8933900 -25973670 + L1ME2 LINE L1 5486 5642 -691 22 35 0 0 chr21 8934219 8934248 -25973322 + AT_rich Low_complexity Low_complexity 1 29 0 27 87 0 0 chr21 8934398 8934467 -25973103 + AT_rich Low_complexity Low_complexity 1 69 0 30 27 0 0 chr21 8934508 8934545 -25973025 + AT_rich Low_complexity Low_complexity 1 37 0 265 188 25 0 chr21 8935089 8935169 -25972401 + (TA)n Simple_repeat Simple_repeat 2 83 0 3085 117 6 32 chr21 8935456 8935954 -25971616 + LTR22B LTR ERVK 5 489 -3 983 320 31 23 chr21 8937192 8937582 -25969988 + LTR40a LTR ERVL 3 395 -124 335 309 21 10 chr21 8937685 8937782 -25969788 - L2 LINE L2 -29 3284 3187 40 49 0 0 chr21 8937804 8937865 -25969705 + AT_rich Low_complexity Low_complexity 1 61 0 333 376 41 25 chr21 8938321 8938688 -25968882 - L2 LINE L2 -963 2351 1979 29 78 0 0 chr21 8938795 8938859 -25968711 + AT_rich Low_complexity Low_complexity 1 64 0 8485 178 37 6 chr21 8941151 8942753 -25964817 - MSTA-int LTR MaLR 0 1651 1 2366 141 69 12 chr21 8942753 8943158 -25964412 - MSTA LTR MaLR 0 428 1 2052 122 127 16 chr21 8943237 8943622 -25963948 - MSTA LTR MaLR 0 428 1 208 176 59 0 chr21 8943966 8944017 -25963553 + T-rich Low_complexity Low_complexity 3 56 0 378 94 0 0 chr21 8945681 8945734 -25961836 + U2 snRNA snRNA 1 53 -135 1489 210 7 0 chr21 8945962 8946257 -25961313 + AluJb SINE Alu 1 297 -15 326 23 0 0 chr21 8946786 8946830 -25960740 + L1PA2 LINE L1 6110 6153 -2 308 266 93 103 chr21 8947003 8947304 -25960266 + L1ME2 LINE L1 5789 6086 -78 593 175 39 0 chr21 8947320 8947423 -25960147 - FLAM_A SINE Alu -35 107 1 195 100 0 0 chr21 8947458 8947488 -25960082 + (CA)n Simple_repeat Simple_repeat 2 31 0 3093 178 41 64 chr21 8948989 8949696 -25957874 - LTR8 LTR ERV1 0 691 1 2239 107 3 3 chr21 8950777 8951086 -25956484 - AluSc SINE Alu 0 309 1 230 271 0 0 chr21 8951447 8951506 -25956064 + (TA)n Simple_repeat Simple_repeat 1 59 0 1106 228 20 64 chr21 8952934 8953325 -25954245 + MLT1A2 LTR MaLR 1 374 0 24 0 0 0 chr21 8953706 8953730 -25953840 + AT_rich Low_complexity Low_complexity 1 24 0 231 157 0 0 chr21 8953890 8953941 -25953629 + (TA)n Simple_repeat Simple_repeat 1 51 0 308 224 31 0 chr21 8953997 8954095 -25953475 + (TA)n Simple_repeat Simple_repeat 2 102 0 342 312 125 10 chr21 8954155 8954347 -25953223 + L1MD3 LINE L1 5734 5947 -2048 2548 137 83 5 chr21 8954460 8954904 -25952666 - MER31A LTR ERV1 -6 479 1 42 0 0 0 chr21 8954978 8955020 -25952550 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 8955042 8955064 -25952506 + AT_rich Low_complexity Low_complexity 1 22 0 1995 115 11 0 chr21 8955231 8955517 -25952053 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr21 8955527 8955548 -25952022 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 197 136 74 12 chr21 8955593 8955674 -25951896 + (TA)n Simple_repeat Simple_repeat 1 86 0 1645 218 6 3 chr21 8956028 8956359 -25951211 - MLT1A1 LTR MaLR 0 365 34 771 228 0 5 chr21 8956614 8956798 -25950772 - L1M4 LINE L1 -3275 2871 2689 2712 167 8 41 chr21 8958009 8958597 -25948973 + L1MB3 LINE L1 5606 6174 -9 2454 39 3 29 chr21 8959153 8959465 -25948105 + AluY SINE Alu 1 304 -7 1281 192 0 25 chr21 8960458 8960703 -25946867 + AluJo SINE Alu 12 250 -62 2109 54 11 4 chr21 8960829 8961107 -25946463 + L1PA7 LINE L1 5874 6153 -1 228 309 32 56 chr21 8962200 8962326 -25945244 + MIR SINE MIR 20 142 -66 22 0 0 0 chr21 8962966 8962988 -25944582 + AT_rich Low_complexity Low_complexity 1 22 0 7342 201 57 29 chr21 8963663 8965280 -25942290 + MER52A LTR ERV1 217 1755 0 187 206 191 0 chr21 8965436 8965499 -25942071 + MIR SINE MIR 120 194 -68 851 200 40 15 chr21 8965744 8966019 -25941551 + Tigger1 DNA MER2_type 2 304 -2114 10289 163 33 8 chr21 8966019 8967870 -25939700 + Tigger1 DNA MER2_type 521 2418 0 4261 183 13 24 chr21 8967870 8968719 -25938851 + L1MC1 LINE L1 5443 6282 -51 1891 56 0 0 chr21 8969227 8969459 -25938111 - AluSc SINE Alu 0 309 78 473 145 0 0 chr21 8969459 8969535 -25938035 + AluS SINE Alu 2 77 -232 186 404 0 20 chr21 8969537 8969636 -25937934 + L3 LINE CR1 1455 1551 -26 946 167 49 20 chr21 8969922 8970126 -25937444 - L1MA4 LINE L1 -7 6293 6084 250 111 0 0 chr21 8970791 8970827 -25936743 - MIR SINE MIR -109 153 118 534 283 65 35 chr21 8972977 8973466 -25934104 - MLT1G1 LTR MaLR -2 593 23 30 27 0 0 chr21 8973683 8973720 -25933850 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr21 8973795 8973832 -25933738 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr21 8973915 8973961 -25933609 + AT_rich Low_complexity Low_complexity 1 46 0 2052 120 17 3 chr21 8974600 8974900 -25932670 - AluSc SINE Alu -5 304 1 252 116 0 87 chr21 8975389 8975458 -25932112 + (TAAAA)n Simple_repeat Simple_repeat 5 67 0 22 0 0 0 chr21 8975464 8975486 -25932084 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 8975570 8975598 -25931972 + AT_rich Low_complexity Low_complexity 1 28 0 889 229 59 81 chr21 8975658 8976029 -25931541 - MLT1A1 LTR MaLR -2 363 1 222 189 0 0 chr21 8976035 8976072 -25931498 + (TG)n Simple_repeat Simple_repeat 2 38 0 401 284 6 0 chr21 8976082 8976251 -25931319 + (TA)n Simple_repeat Simple_repeat 1 170 0 1814 131 36 0 chr21 8976300 8976605 -25930965 + AluSq SINE Alu 1 315 0 21 95 0 0 chr21 8979210 8979273 -25928297 + AT_rich Low_complexity Low_complexity 1 63 0 342 272 48 19 chr21 8979946 8980049 -25927521 - MER110 LTR ERV1 0 491 386 799 172 31 0 chr21 8980212 8980375 -25927195 - MER110A LTR ERV1 -300 168 1 22 35 0 0 chr21 8980559 8980588 -25926982 + AT_rich Low_complexity Low_complexity 1 29 0 1300 140 31 19 chr21 8981065 8981350 -25926220 + MER61C LTR ERV1 1 378 -56 259 128 0 21 chr21 8981585 8981632 -25925938 + MER61B LTR ERV1 380 425 0 1897 192 87 60 chr21 8982532 8983151 -25924419 - MER92B LTR ERV1 0 636 1 320 282 16 40 chr21 8983647 8983771 -25923799 + MIR SINE MIR 46 166 -96 2916 190 14 17 chr21 8983825 8984414 -25923156 + L1MA6 LINE L1 3907 4493 -1653 4602 170 14 23 chr21 8984411 8985290 -25922280 + L1MA6 LINE L1 5385 6257 -43 2085 118 0 17 chr21 8985290 8985587 -25921983 - AluSx SINE Alu -16 296 5 4602 170 14 23 chr21 8985587 8985623 -25921947 + L1MA6 LINE L1 6257 6292 -8 242 208 0 0 chr21 8987130 8987183 -25920387 - L1PB4 LINE L1 -2 6154 6102 279 354 49 21 chr21 8987326 8987470 -25920100 - MIR SINE MIR -112 150 3 663 270 80 31 chr21 8987471 8987760 -25919810 - MER102b DNA MER1_type 0 341 39 1962 107 48 0 chr21 8988487 8988776 -25918794 + AluSc SINE Alu 7 309 0 207 298 36 6 chr21 8989349 8989449 -25918121 + MIR SINE MIR 21 123 -85 27 49 0 0 chr21 8990058 8990099 -25917471 + AT_rich Low_complexity Low_complexity 1 41 0 1977 174 63 27 chr21 8990508 8990921 -25916649 + MSTA LTR MaLR 1 428 0 7425 187 50 27 chr21 8990921 8992536 -25915034 + MSTA-int LTR MaLR 1 1651 0 2123 191 62 2 chr21 8992536 8992940 -25914630 + MSTA LTR MaLR 1 428 0 459 227 8 17 chr21 8992987 8993106 -25914464 - MER58B DNA MER1_type -8 333 216 326 176 0 0 chr21 8993101 8993152 -25914418 - MER58B DNA MER1_type -288 53 3 706 293 77 5 chr21 8993229 8993451 -25914119 - MIR SINE MIR -7 255 18 24 0 0 0 chr21 8993629 8993653 -25913917 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr21 8994153 8994185 -25913385 + AT_rich Low_complexity Low_complexity 1 32 0 344 291 109 11 chr21 8995855 8996030 -25911540 - MIR SINE MIR -1 261 70 492 29 0 0 chr21 8998031 8998101 -25909469 - AluY SINE Alu 0 310 241 1325 211 33 21 chr21 8998504 8998841 -25908729 + L1MA9 LINE L1 5970 6310 -2 322 328 26 37 chr21 8999309 8999580 -25907990 + L1P LINE L1 3899 4166 -1980 321 68 0 0 chr21 9000006 9000050 -25907520 + (TG)n Simple_repeat Simple_repeat 2 45 0 2231 82 34 3 chr21 9000070 9000361 -25907209 - AluSq SINE Alu -11 302 3 717 290 45 100 chr21 9000902 9001536 -25906034 + L1ME3A LINE L1 5260 5849 -321 1066 199 43 115 chr21 9001536 9001928 -25905642 + MLT1A1 LTR MaLR 1 364 -1 717 290 45 100 chr21 9001928 9002034 -25905536 + L1ME3A LINE L1 5849 5959 -211 1777 177 47 56 chr21 9002189 9002246 -25905324 + MSTB LTR MaLR 1 57 -369 2405 77 0 3 chr21 9002246 9002556 -25905014 + AluY SINE Alu 1 309 -2 1777 177 47 56 chr21 9002556 9002928 -25904642 + MSTB LTR MaLR 57 426 0 30 59 0 0 chr21 9003038 9003089 -25904481 + AT_rich Low_complexity Low_complexity 1 51 0 3263 162 23 16 chr21 9003947 9004455 -25903115 + L1MC2 LINE L1 5323 5826 -518 2050 152 0 7 chr21 9004455 9004764 -25902806 + AluSx SINE Alu 1 307 -5 3263 162 23 16 chr21 9004764 9004942 -25902628 + L1MC2 LINE L1 5826 6079 -265 468 0 0 0 chr21 9004942 9004994 -25902576 + (TA)n Simple_repeat Simple_repeat 2 53 0 3263 162 23 16 chr21 9004994 9005084 -25902486 + L1MC2 LINE L1 6079 6167 -177 498 208 75 81 chr21 9005085 9005258 -25902312 + MLT1B LTR MaLR 1 172 -218 413 133 26 9 chr21 9005290 9005403 -25902167 + (CA)n Simple_repeat Simple_repeat 2 116 0 309 125 0 0 chr21 9005425 9005481 -25902089 + (TC)n Simple_repeat Simple_repeat 1 56 0 589 217 43 31 chr21 9005495 9005656 -25901914 + MLT1B LTR MaLR 201 363 -27 605 239 55 0 chr21 9005667 9005830 -25901740 + L1MC2 LINE L1 6165 6336 -8 198 71 0 0 chr21 9006270 9006298 -25901272 + (TG)n Simple_repeat Simple_repeat 1 28 0 185 0 40 0 chr21 9006297 9006322 -25901248 + (GA)n Simple_repeat Simple_repeat 1 26 0 1619 191 4 4 chr21 9007417 9007695 -25899875 + AluJb SINE Alu 2 279 -33 293 366 91 29 chr21 9007961 9008136 -25899434 - MIR SINE MIR -31 231 46 261 269 27 54 chr21 9008608 9008750 -25898820 - L2 LINE L2 -20 3293 3154 1865 149 58 25 chr21 9008750 9009113 -25898457 - THE1C LTR MaLR 0 375 1 1977 207 14 29 chr21 9009424 9009844 -25897726 + MLT2D LTR ERVL 1 414 0 1439 173 63 66 chr21 9010075 9010440 -25897130 + THE1B LTR MaLR 1 364 0 1623 214 56 0 chr21 9010827 9011278 -25896292 + L1MCa LINE L1 18 538 -5888 492 331 60 44 chr21 9011655 9012039 -25895531 + L1MCc LINE L1 786 1175 -5248 21 36 0 0 chr21 9012039 9012067 -25895503 + AT_rich Low_complexity Low_complexity 1 28 0 837 265 43 20 chr21 9012167 9012572 -25894998 + L1MCc LINE L1 1211 1625 -4887 2567 65 0 0 chr21 9012572 9012881 -25894689 + AluY SINE Alu 1 309 -2 261 0 0 0 chr21 9012913 9012942 -25894628 + (TG)n Simple_repeat Simple_repeat 2 30 0 1491 205 16 19 chr21 9013232 9013539 -25894031 + AluJo SINE Alu 1 306 -6 25 0 0 0 chr21 9013597 9013622 -25893948 + AT_rich Low_complexity Low_complexity 1 25 0 1059 233 15 38 chr21 9013694 9013960 -25893610 + L1ME1 LINE L1 8 267 -6275 3318 198 35 21 chr21 9014199 9015051 -25892519 + L1ME1 LINE L1 768 1631 -4911 4101 226 89 53 chr21 9015050 9015483 -25892087 + L1ME1 LINE L1 4246 4662 -2002 282 56 0 0 chr21 9015483 9015519 -25892051 + (CA)n Simple_repeat Simple_repeat 2 37 0 4101 226 89 53 chr21 9015519 9016217 -25891353 + L1ME1 LINE L1 4662 5333 -1331 1830 168 45 25 chr21 9016217 9016574 -25890996 + THE1B LTR MaLR 1 364 0 10012 108 31 43 chr21 9016575 9018172 -25889398 + THE1C-int LTR MaLR 2 1580 0 2022 160 53 3 chr21 9018172 9018529 -25889041 + THE1C LTR MaLR 1 375 0 4101 226 89 53 chr21 9018529 9019166 -25888404 + L1ME1 LINE L1 5333 5946 -718 189 0 0 0 chr21 9019166 9019187 -25888383 + (TA)n Simple_repeat Simple_repeat 2 22 0 4101 226 89 53 chr21 9019187 9019751 -25887819 + L1ME1 LINE L1 5946 6659 -5 225 0 0 0 chr21 9019787 9019812 -25887758 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1264 213 58 101 chr21 9020092 9020358 -25887212 + MER50 LTR ERV1 240 475 -259 2341 52 3 39 chr21 9020358 9020665 -25886905 - AluY SINE Alu -15 296 1 1264 213 58 101 chr21 9020665 9020915 -25886655 + MER50 LTR ERV1 475 734 0 276 355 12 47 chr21 9020981 9021153 -25886417 + L2 LINE L2 2243 2408 -906 229 224 20 0 chr21 9021243 9021292 -25886278 + L2 LINE L2 3264 3313 0 968 211 68 0 chr21 9022428 9022679 -25884891 - L1MA4 LINE L1 -6 6294 6027 684 192 0 8 chr21 9023030 9023150 -25884420 + FLAM_C SINE Alu 12 130 -13 27 0 0 0 chr21 9023664 9023691 -25883879 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 3 0 chr21 9023767 9024060 -25883510 + AluSp SINE Alu 1 294 -19 359 127 0 0 chr21 9024618 9024673 -25882897 - MADE1 DNA Mariner 0 80 26 2037 217 57 6 chr21 9025002 9025153 -25882417 + L1MB1 LINE L1 5677 5819 -370 1853 128 0 15 chr21 9025153 9025427 -25882143 + AluSx SINE Alu 38 307 -5 2037 217 57 6 chr21 9025427 9025745 -25881825 + L1MB1 LINE L1 5819 6170 -19 2430 46 0 33 chr21 9027668 9027972 -25879598 - AluY SINE Alu -6 305 12 251 175 16 32 chr21 9028379 9028442 -25879128 + L1ME4a LINE L1 5982 6043 -78 25 83 0 0 chr21 9028454 9028514 -25879056 + AT_rich Low_complexity Low_complexity 1 60 0 202 352 28 0 chr21 9029004 9029075 -25878495 - MIR SINE MIR -161 101 29 2059 122 0 33 chr21 9030966 9031270 -25876300 + AluSq SINE Alu 1 294 -19 2204 183 45 2 chr21 9031396 9031861 -25875709 - MER31A LTR ERV1 0 485 1 599 155 0 46 chr21 9032537 9032711 -25874859 + (TA)n Simple_repeat Simple_repeat 2 167 0 198 0 0 0 chr21 9032761 9032783 -25874787 + (TA)n Simple_repeat Simple_repeat 2 23 0 704 206 14 21 chr21 9035485 9035626 -25871944 - MER68 LTR ERV1 -8 554 415 785 254 0 26 chr21 9035630 9035819 -25871751 + MLT1B LTR MaLR 4 187 -187 327 136 0 0 chr21 9035819 9035878 -25871692 + (TC)n Simple_repeat Simple_repeat 2 60 0 910 247 0 0 chr21 9035879 9036065 -25871505 + MLT1B LTR MaLR 205 390 0 2333 169 38 5 chr21 9036072 9036469 -25871101 - MER68 LTR ERV1 -152 410 1 2231 92 0 10 chr21 9037106 9037401 -25870169 + AluY SINE Alu 1 292 -19 201 213 0 0 chr21 9037932 9037979 -25869591 + (TA)n Simple_repeat Simple_repeat 2 48 0 192 40 0 0 chr21 9038571 9038596 -25868974 + (TA)n Simple_repeat Simple_repeat 1 25 0 225 108 0 0 chr21 9038595 9038632 -25868938 + (CA)n Simple_repeat Simple_repeat 2 38 0 1156 257 107 113 chr21 9039207 9040001 -25867569 + MER21B LTR ERV1 13 801 -62 1044 276 76 59 chr21 9040678 9042169 -25865401 - L1M4 LINE L1 -1098 5048 3336 2121 131 0 3 chr21 9042315 9042627 -25864943 - AluSq SINE Alu -2 311 1 363 269 53 53 chr21 9042630 9042801 -25864769 - L1M4 LINE L1 -3016 3130 2960 321 290 14 14 chr21 9043037 9043182 -25864388 - L1M4 LINE L1 -3351 2795 2651 1751 240 25 16 chr21 9047871 9048313 -25859257 - LTR40a LTR ERVL -3 516 71 980 262 50 0 chr21 9048367 9048626 -25858944 - HERVL40 LTR ERVL -12 5518 5247 364 307 24 12 chr21 9048584 9048750 -25858820 - MER68-int LTR ERV1 -316 6485 6318 456 286 0 0 chr21 9049600 9049705 -25857865 - HERVL40 LTR ERVL -1162 4368 4264 2035 289 50 17 chr21 9049825 9050489 -25857081 - HERVL40 LTR ERVL -1415 4115 3430 439 271 41 16 chr21 9050554 9050676 -25856894 - HERVL40 LTR ERVL -2190 3340 3216 664 207 14 0 chr21 9050677 9050817 -25856753 - LTR40a LTR ERVL -317 202 61 2229 82 11 0 chr21 9051075 9051378 -25856192 + AluY SINE Alu 1 306 0 1419 206 69 53 chr21 9051843 9052222 -25855348 - MLT1B LTR MaLR -3 387 3 2375 87 0 3 chr21 9052228 9052540 -25855030 - AluY SINE Alu 0 311 1 2062 246 46 6 chr21 9053028 9053549 -25854021 - REP3 LTR ERV -20 542 1 663 197 95 0 chr21 9055553 9055690 -25851880 - MLT1D LTR MaLR -349 156 7 1135 357 27 27 chr21 9056140 9056888 -25850682 + ERVL LTR ERVL 3686 4433 -1331 2316 90 33 41 chr21 9057138 9057505 -25850065 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr21 9059031 9059056 -25848514 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 9059382 9059403 -25848167 + AT_rich Low_complexity Low_complexity 1 21 0 302 0 0 26 chr21 9059785 9059824 -25847746 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 435 225 83 17 chr21 9059905 9060025 -25847545 + LTR50 LTR ERVL 1 128 -667 774 256 47 38 chr21 9060031 9060348 -25847222 + L1ME2 LINE L1 5844 6163 -1 231 61 0 0 chr21 9060424 9060457 -25847113 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2022 103 0 25 chr21 9060464 9060745 -25846825 - AluSx SINE Alu -38 274 1 316 0 45 0 chr21 9060877 9060921 -25846649 + (TA)n Simple_repeat Simple_repeat 2 47 0 319 187 22 14 chr21 9062675 9062814 -25844756 + (TA)n Simple_repeat Simple_repeat 1 140 0 197 389 22 0 chr21 9063413 9063503 -25844067 - MIR SINE MIR -66 142 51 29 60 0 0 chr21 9064933 9064983 -25842587 + AT_rich Low_complexity Low_complexity 1 50 0 2047 123 0 35 chr21 9065685 9065995 -25841575 - AluSg SINE Alu -11 299 1 530 287 44 19 chr21 9066497 9066673 -25840897 + MER58B DNA MER1_type 36 341 0 2332 104 8 8 chr21 9068538 9068895 -25838675 + L1PA13 LINE L1 5799 6155 -8 248 146 0 0 chr21 9069196 9069237 -25838333 - Alu SINE Alu -5 170 130 390 42 0 0 chr21 9069336 9069384 -25838186 + (CA)n Simple_repeat Simple_repeat 2 49 0 1245 198 31 38 chr21 9070096 9070384 -25837186 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr21 9070440 9070473 -25837097 + AT_rich Low_complexity Low_complexity 1 33 0 40 49 0 0 chr21 9071253 9071314 -25836256 + AT_rich Low_complexity Low_complexity 1 61 0 1109 43 0 0 chr21 9071658 9071796 -25835774 - L1PA5 LINE L1 0 6154 6017 811 221 66 89 chr21 9073252 9073719 -25833851 + MLT1F1 LTR MaLR 63 654 0 361 262 138 7 chr21 9074143 9074288 -25833282 - L2 LINE L2 -942 2372 2209 209 186 0 0 chr21 9076405 9076448 -25831122 + GA-rich Low_complexity Low_complexity 2 44 0 375 23 0 0 chr21 9076451 9076495 -25831075 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr21 9076805 9076826 -25830744 + AT_rich Low_complexity Low_complexity 1 21 0 2104 112 0 7 chr21 9077001 9077296 -25830274 - AluSg SINE Alu -17 293 1 209 250 18 0 chr21 9077619 9077675 -25829895 + (TA)n Simple_repeat Simple_repeat 2 58 0 207 152 0 0 chr21 9077705 9077751 -25829819 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr21 9078088 9078116 -25829454 + AT_rich Low_complexity Low_complexity 1 30 0 434 337 25 10 chr21 9079414 9079610 -25827960 + L2 LINE L2 2378 2576 -738 651 216 91 30 chr21 9079846 9080078 -25827492 + L1MCc LINE L1 1277 1522 -4901 21 36 0 0 chr21 9080413 9080441 -25827129 + AT_rich Low_complexity Low_complexity 1 28 0 919 236 4 31 chr21 9080469 9080694 -25826876 + MER20 DNA MER1_type 1 219 0 30 45 0 0 chr21 9080946 9080990 -25826580 + AT_rich Low_complexity Low_complexity 1 44 0 414 233 45 0 chr21 9081044 9081177 -25826393 + L1MCc LINE L1 2901 3039 -4083 521 258 6 0 chr21 9081179 9081357 -25826213 + L1MCc LINE L1 3037 3215 -3726 292 352 47 22 chr21 9081389 9081838 -25825732 + L1MCc LINE L1 3291 3750 -3191 1755 291 38 25 chr21 9081855 9082548 -25825022 + L1MCc LINE L1 3783 4484 -2457 659 220 82 35 chr21 9082661 9082916 -25824654 + L1MCc LINE L1 5232 5498 -1443 373 299 11 20 chr21 9082947 9083181 -25824389 + L1MCc LINE L1 5986 6219 -743 920 276 41 22 chr21 9083200 9083566 -25824004 - L1M4 LINE L1 -1072 5074 4702 420 270 11 86 chr21 9083566 9083740 -25823830 + L2 LINE L2 3148 3308 -5 778 237 93 66 chr21 9083867 9084319 -25823251 - Charlie4a DNA MER1_type -5 503 40 12908 159 34 21 chr21 9084322 9084559 -25823011 - Tigger1 DNA MER2_type 0 2418 2185 210 37 0 0 chr21 9084559 9084586 -25822984 + (TTG)n Simple_repeat Simple_repeat 1 27 0 12908 159 34 21 chr21 9084586 9086736 -25820834 - Tigger1 DNA MER2_type -233 2185 2 1624 201 0 7 chr21 9087683 9087976 -25819594 + AluJo SINE Alu 11 301 -11 1817 149 3 13 chr21 9088935 9089236 -25818334 - AluSx SINE Alu -14 298 1 2226 125 0 0 chr21 9089981 9090277 -25817293 - AluSx SINE Alu -16 296 1 3386 90 14 34 chr21 9090313 9090814 -25816756 + L1PA8A LINE L1 5629 6119 -12 2127 104 34 0 chr21 9090820 9091117 -25816453 + AluY SINE Alu 1 307 -4 501 343 107 66 chr21 9091117 9091648 -25815922 - L2 LINE L2 -2704 610 58 23 33 0 0 chr21 9092176 9092206 -25815364 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr21 9092495 9092532 -25815038 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr21 9093654 9093682 -25813888 + AT_rich Low_complexity Low_complexity 1 28 0 2152 161 46 15 chr21 9094039 9094430 -25813140 - MER61D LTR ERV1 0 501 99 20473 123 27 15 chr21 9094445 9094706 -25812864 - MER61D-int LTR ERV1 0 5217 4961 2054 122 0 14 chr21 9094706 9095002 -25812568 + AluSx SINE Alu 5 296 -16 20473 123 27 15 chr21 9095002 9097946 -25809624 - MER61D-int LTR ERV1 -256 4961 1972 2624 153 2 13 chr21 9097925 9098464 -25809106 - MER61D-int LTR ERV1 -3574 2012 1214 1175 109 11 11 chr21 9098465 9098640 -25808930 - MER61D LTR ERV1 -184 317 143 2326 201 95 87 chr21 9098640 9099637 -25807933 - MER61D-int LTR ERV1 -4060 1157 153 309 103 0 17 chr21 9099647 9099705 -25807865 + Alu SINE Alu 1 57 -243 3509 129 9 9 chr21 9099705 9100263 -25807307 - MER61-int LTR ERV1 -2066 3151 2594 1142 82 0 13 chr21 9100267 9100425 -25807145 + AluSc SINE Alu 70 225 -84 249 212 141 12 chr21 9100425 9100510 -25807060 + LTR10A LTR ERV1 3 98 -511 1653 152 65 50 chr21 9100560 9100940 -25806630 + LTR10A LTR ERV1 177 609 0 579 49 12 0 chr21 9100940 9101022 -25806548 + AluSc SINE Alu 220 302 -7 32 67 0 0 chr21 9101128 9101188 -25806382 + AT_rich Low_complexity Low_complexity 1 60 0 285 283 72 100 chr21 9102122 9102401 -25805169 + MLT1I LTR MaLR 111 381 -28 980 212 99 75 chr21 9105812 9105922 -25801648 + MER31B LTR ERV1 3 109 -357 1761 180 3 7 chr21 9105922 9106217 -25801353 + AluJo SINE Alu 1 294 -18 980 212 99 75 chr21 9106217 9106559 -25801011 + MER31B LTR ERV1 109 466 0 1117 159 84 1 chr21 9106639 9107041 -25800529 - MER31A LTR ERV1 -6 479 1 2626 195 82 33 chr21 9107324 9108063 -25799507 + LTR48 LTR ERV1 7 699 -8 28 29 0 0 chr21 9109330 9109365 -25798205 + AT_rich Low_complexity Low_complexity 1 35 0 1910 208 88 11 chr21 9109627 9110094 -25797476 + MER67C LTR ERV1 3 505 -205 1039 125 57 5 chr21 9110146 9110338 -25797232 + Tigger5 DNA MER2_type 2030 2231 -92 3671 156 99 3 chr21 9110331 9110974 -25796596 + MER50 LTR ERV1 7 711 -23 533 189 11 0 chr21 9110974 9111069 -25796501 + Tigger5 DNA MER2_type 2228 2323 0 1035 171 9 23 chr21 9111069 9111233 -25796337 + MER67C LTR ERV1 504 666 -44 2421 85 3 0 chr21 9111233 9111538 -25796032 + AluY SINE Alu 1 306 -5 1035 171 9 23 chr21 9111538 9111580 -25795990 + MER67C LTR ERV1 666 707 -3 2280 190 113 29 chr21 9111814 9112501 -25795069 + LTR48 LTR ERV1 7 787 0 374 244 38 30 chr21 9112501 9112628 -25794942 - MER110A LTR ERV1 -339 129 2 3849 169 43 34 chr21 9112695 9113482 -25794088 + LTR39 LTR ERV1 1 794 0 183 42 0 0 chr21 9114605 9114629 -25792941 + (TA)n Simple_repeat Simple_repeat 2 25 0 5410 100 1 3 chr21 9114788 9115549 -25792021 + L1PA11 LINE L1 5413 6172 -2 1624 165 19 0 chr21 9115810 9116070 -25791500 + AluJo SINE Alu 23 287 -25 22 0 0 0 chr21 9116148 9116170 -25791400 + AT_rich Low_complexity Low_complexity 1 22 0 553 332 37 0 chr21 9116197 9116387 -25791183 - MIR SINE MIR -38 224 28 2079 109 3 3 chr21 9116852 9117183 -25790387 - AluSc SINE Alu 0 331 1 1352 157 39 26 chr21 9117650 9117879 -25789691 + MER1B DNA MER1_type 59 290 -49 1790 129 40 18 chr21 9118739 9119017 -25788553 + THE1B LTR MaLR 1 284 -80 1393 68 0 0 chr21 9119881 9120058 -25787512 + AluY SINE Alu 135 311 0 21 0 0 0 chr21 9120527 9120548 -25787022 + AT_rich Low_complexity Low_complexity 1 21 0 498 270 76 38 chr21 9120670 9120855 -25786715 + MER63A DNA MER1_type 1 192 -18 536 168 0 9 chr21 9124420 9124527 -25783043 + FLAM_C SINE Alu 36 141 -2 526 237 96 40 chr21 9124529 9124706 -25782864 - MLT1L LTR MaLR -87 528 342 1780 154 18 7 chr21 9125263 9125573 -25781997 + AluSx SINE Alu 1 313 0 453 333 108 0 chr21 9125723 9125909 -25781661 + MIR SINE MIR 9 214 -48 1889 127 67 51 chr21 9127148 9127479 -25780091 + MER1B DNA MER1_type 1 336 -1 26 50 0 0 chr21 9127760 9127800 -25779770 + AT_rich Low_complexity Low_complexity 1 40 0 29 78 0 0 chr21 9129066 9129130 -25778440 + AT_rich Low_complexity Low_complexity 1 64 0 1072 231 166 92 chr21 9129525 9130134 -25777436 - MLT1E1 LTR MaLR 0 654 1 848 214 24 0 chr21 9133776 9133944 -25773626 - MLT1A1 LTR MaLR 0 365 194 251 214 0 0 chr21 9134324 9134366 -25773204 - MLT1J2 LTR MaLR -132 318 277 267 54 0 0 chr21 9134372 9134409 -25773161 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 793 289 19 27 chr21 9134919 9135182 -25772388 - MIR SINE MIR 0 262 2 2566 30 0 3 chr21 9135351 9135652 -25771918 - AluY SINE Alu -11 300 1 242 299 0 15 chr21 9135692 9135759 -25771811 + L2 LINE L2 3229 3294 -19 35 0 0 0 chr21 9135949 9135984 -25771586 + AT_rich Low_complexity Low_complexity 1 35 0 4870 167 9 16 chr21 9136003 9136943 -25770627 - L1PB4 LINE L1 -1 6155 5222 5084 167 14 3 chr21 9139449 9140364 -25767206 - L1MA4 LINE L1 0 6300 5376 184 220 169 0 chr21 9140571 9140630 -25766940 + L2 LINE L2 3192 3260 -12 24 0 0 0 chr21 9140714 9140738 -25766832 + AT_rich Low_complexity Low_complexity 1 24 0 573 121 12 0 chr21 9142682 9142765 -25764805 - AluJb SINE Alu -17 295 212 1026 255 42 27 chr21 9142772 9143381 -25764189 - LTR48B LTR ERV1 -1 643 1 285 184 9 167 chr21 9143381 9143487 -25764083 + MLT1C LTR MaLR 60 147 -320 911 207 10 29 chr21 9143485 9143693 -25763877 + MLT1C LTR MaLR 264 467 0 1921 156 27 30 chr21 9143724 9144089 -25763481 - THE1C LTR MaLR 0 375 12 2511 104 16 19 chr21 9144655 9145031 -25762539 - THE1C LTR MaLR 0 375 1 195 220 0 0 chr21 9145037 9145087 -25762483 + CT-rich Low_complexity Low_complexity 27 76 0 324 0 0 0 chr21 9145134 9145170 -25762400 + (TA)n Simple_repeat Simple_repeat 2 37 0 2597 40 0 3 chr21 9145170 9145470 -25762100 - AluY SINE Alu -12 299 1 2201 136 30 22 chr21 9145742 9146103 -25761467 - THE1B LTR MaLR 0 364 1 676 241 70 0 chr21 9149878 9150065 -25757505 + MER67D LTR ERV1 310 509 -5 22 56 0 0 chr21 9151106 9151142 -25756428 + AT_rich Low_complexity Low_complexity 1 36 0 229 255 0 0 chr21 9151143 9151190 -25756380 - MIR SINE MIR -208 54 8 2386 43 0 0 chr21 9151243 9151562 -25756008 + AluY SINE Alu 5 323 0 261 337 109 27 chr21 9151705 9151889 -25755681 - MIR SINE MIR 0 262 64 229 136 30 0 chr21 9152139 9152205 -25755365 + (CA)n Simple_repeat Simple_repeat 1 68 0 190 156 31 0 chr21 9152237 9152301 -25755269 + (CA)n Simple_repeat Simple_repeat 1 66 0 190 156 31 0 chr21 9152333 9152397 -25755173 + (CA)n Simple_repeat Simple_repeat 1 66 0 1391 102 68 34 chr21 9153331 9153567 -25754003 - L1PA14 LINE L1 -6 6155 5912 1725 110 8 0 chr21 9154360 9154596 -25752974 + AluSq SINE Alu 1 238 -75 469 186 23 0 chr21 9155333 9155419 -25752151 + FLAM_A SINE Alu 37 124 -18 1059 309 36 18 chr21 9155481 9155872 -25751698 - LTR16C LTR ERVL -4 487 90 244 286 48 82 chr21 9156019 9156200 -25751370 - L1MC/D LINE L1 -2260 5548 5379 2494 88 0 0 chr21 9156200 9156508 -25751062 - AluSp SINE Alu -5 308 1 244 286 48 82 chr21 9156508 9156620 -25750950 - L1MC/D LINE L1 -2429 5379 5265 5006 153 36 39 chr21 9156871 9157161 -25750409 - L1MA5A LINE L1 0 6297 6008 3434 111 6 14 chr21 9157161 9157676 -25749894 + MER9 LTR ERVK 1 511 0 5006 153 36 39 chr21 9157676 9158620 -25748950 - L1MA5A LINE L1 -289 6008 5061 682 231 0 0 chr21 9159179 9159300 -25748270 + FLAM_A SINE Alu 2 122 -11 286 189 40 0 chr21 9159326 9159400 -25748170 + L1MB2 LINE L1 6094 6170 -1 2154 120 3 0 chr21 9159402 9159694 -25747876 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr21 9159699 9159731 -25747839 + AT_rich Low_complexity Low_complexity 1 32 0 402 291 51 0 chr21 9160980 9161097 -25746473 + MLT1J1 LTR MaLR 1 123 -323 1653 165 88 3 chr21 9161105 9161390 -25746180 + THE1-int LTR MaLR 797 1105 -475 1101 258 16 0 chr21 9161684 9161936 -25745634 - MLT1A1 LTR MaLR 0 365 110 339 133 13 0 chr21 9162037 9162097 -25745473 + LTR41 LTR ERVL 715 795 0 796 255 98 51 chr21 9162161 9162671 -25744899 + HAL1 LINE L1 617 1150 -1357 2300 89 0 3 chr21 9162875 9163168 -25744402 + AluSx SINE Alu 8 299 -13 597 297 68 4 chr21 9163187 9163450 -25744120 + HAL1 LINE L1 1404 1683 -824 540 298 115 68 chr21 9163602 9164002 -25743568 + HAL1 LINE L1 1877 2295 -212 2359 90 0 6 chr21 9164139 9164451 -25743119 - AluY SINE Alu -1 310 1 2197 116 3 0 chr21 9164962 9165272 -25742298 - AluSx SINE Alu -1 311 1 412 387 0 28 chr21 9166026 9166238 -25741332 + L3 LINE CR1 1352 1557 -20 252 0 0 0 chr21 9167011 9167039 -25740531 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 22 0 0 0 chr21 9167603 9167625 -25739945 + AT_rich Low_complexity Low_complexity 1 22 0 2181 189 29 10 chr21 9167928 9168346 -25739224 - MSTB1 LTR MaLR -6 426 1 288 299 37 37 chr21 9168465 9168572 -25738998 - MIR SINE MIR -151 111 5 3774 141 10 72 chr21 9169967 9170699 -25736871 - LTR8 LTR ERV1 -5 686 1 450 228 20 0 chr21 9171173 9171274 -25736296 - MIR SINE MIR 0 262 160 1966 200 83 33 chr21 9171276 9171756 -25735814 - MLT1D LTR MaLR -1 504 1 551 275 84 14 chr21 9171760 9171902 -25735668 - MIR SINE MIR -109 153 2 388 263 6 70 chr21 9172279 9172435 -25735135 + MER5A DNA MER1_type 43 188 -1 715 191 98 17 chr21 9172466 9172639 -25734931 + MER20 DNA MER1_type 1 187 -32 21 36 0 0 chr21 9172843 9172871 -25734699 + AT_rich Low_complexity Low_complexity 1 28 0 2404 94 0 0 chr21 9172999 9173306 -25734264 + AluSc SINE Alu 1 307 -2 361 220 154 0 chr21 9173353 9173444 -25734126 + MIR SINE MIR 38 142 -120 48 43 0 0 chr21 9175788 9175857 -25731713 + AT_rich Low_complexity Low_complexity 1 69 0 269 333 22 15 chr21 9176028 9176163 -25731407 + (TATATG)n Simple_repeat Simple_repeat 5 140 0 1016 139 0 0 chr21 9176234 9176399 -25731171 + L1MA4 LINE L1 6129 6293 -7 28 0 0 0 chr21 9176482 9176510 -25731060 + AT_rich Low_complexity Low_complexity 1 28 0 221 0 35 0 chr21 9178112 9178141 -25729429 + (CATA)n Simple_repeat Simple_repeat 3 32 0 297 167 0 0 chr21 9178620 9178674 -25728896 + GA-rich Low_complexity Low_complexity 3 56 0 1469 194 45 45 chr21 9179398 9179779 -25727791 + MLT1B LTR MaLR 10 390 0 204 97 0 0 chr21 9179857 9179888 -25727682 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 202 309 128 0 chr21 9180907 9181001 -25726569 - MIR SINE MIR -123 139 34 264 284 0 0 chr21 9182312 9182379 -25725191 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 27 0 0 0 chr21 9182382 9182409 -25725161 + AT_rich Low_complexity Low_complexity 1 27 0 5545 122 40 7 chr21 9182508 9183562 -25724008 - L1PA14 LINE L1 -1 6160 5098 328 188 12 12 chr21 9185727 9185812 -25721758 + CT-rich Low_complexity Low_complexity 2 86 0 357 292 53 0 chr21 9186291 9186404 -25721166 + MIR3 SINE MIR 81 199 -9 1030 86 33 0 chr21 9186548 9186699 -25720871 - L1PA11 LINE L1 -1 6173 6018 367 155 0 0 chr21 9187159 9187217 -25720353 + LTR16C LTR ERVL 425 482 -9 189 0 0 0 chr21 9187249 9187270 -25720300 + (CA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr21 9187599 9187622 -25719948 + AT_rich Low_complexity Low_complexity 1 23 0 458 136 118 55 chr21 9188022 9188132 -25719438 + FLAM_C SINE Alu 5 121 -12 25 0 0 0 chr21 9188135 9188160 -25719410 + AT_rich Low_complexity Low_complexity 1 25 0 460 283 189 0 chr21 9188382 9188562 -25719008 + L2 LINE L2 2725 2938 -376 23 0 0 0 chr21 9189181 9189204 -25718366 + AT_rich Low_complexity Low_complexity 1 23 0 1737 162 11 0 chr21 9191122 9191436 -25716134 - AluJo SINE Alu 0 319 3 350 331 24 36 chr21 9191750 9191916 -25715654 + L2 LINE L2 3150 3313 0 443 288 27 14 chr21 9192359 9192505 -25715065 - L3 LINE CR1 -751 826 679 1638 218 43 48 chr21 9192608 9193071 -25714499 - MLT1C LTR MaLR 0 467 7 189 0 0 0 chr21 9193234 9193255 -25714315 + (TG)n Simple_repeat Simple_repeat 2 22 0 2343 78 0 3 chr21 9193369 9193663 -25713907 - AluSc SINE Alu -16 293 1 22 0 0 0 chr21 9194532 9194554 -25713016 + AT_rich Low_complexity Low_complexity 1 22 0 746 134 0 8 chr21 9195414 9195533 -25712037 - FLAM_C SINE Alu -25 118 1 369 114 0 43 chr21 9196503 9196573 -25710997 - L1MC2 LINE L1 -130 6214 6148 271 45 68 0 chr21 9196608 9196652 -25710918 + L1MC2 LINE L1 6150 6196 -148 1238 194 30 11 chr21 9196616 9196879 -25710691 - L1MC2 LINE L1 -160 6184 5917 21 89 0 0 chr21 9197331 9197387 -25710183 + AT_rich Low_complexity Low_complexity 1 56 0 196 120 40 0 chr21 9198750 9198800 -25708770 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 216 0 0 0 chr21 9199970 9199994 -25707576 + (TC)n Simple_repeat Simple_repeat 2 25 0 192 152 0 0 chr21 9202453 9202486 -25705084 + L2 LINE L2 2703 2735 -579 1650 254 28 24 chr21 9202871 9203410 -25704160 - MLT1F LTR MaLR 0 542 2 4896 133 13 1 chr21 9204443 9205917 -25701653 - L1PA16 LINE L1 -9 6157 4705 1121 262 80 31 chr21 9207981 9208405 -25699165 + MSTB2 LTR MaLR 1 445 -12 1602 204 64 12 chr21 9208741 9209085 -25698485 + MLT1A1 LTR MaLR 4 365 0 256 316 63 0 chr21 9211687 9211766 -25695804 - L2 LINE L2 -50 3222 3139 1392 179 47 50 chr21 9212245 9212542 -25695028 - AluJo SINE Alu -16 296 1 2052 183 49 2 chr21 9213259 9213668 -25693902 + MSTA LTR MaLR 1 428 0 597 171 0 0 chr21 9215206 9215323 -25692247 + (TG)n Simple_repeat Simple_repeat 2 118 0 2244 107 3 0 chr21 9215516 9215816 -25691754 - AluSp SINE Alu -12 301 1 423 270 97 5 chr21 9216804 9216989 -25690581 - LTR33A LTR ERVL -91 432 231 1592 187 62 30 chr21 9217067 9217436 -25690134 + MLT1B LTR MaLR 1 381 -9 252 246 150 20 chr21 9217619 9217754 -25689816 - MIR SINE MIR -82 180 2 360 0 0 0 chr21 9217892 9217932 -25689638 + (TG)n Simple_repeat Simple_repeat 1 40 0 1531 176 23 0 chr21 9218082 9218338 -25689232 - AluJb SINE Alu -20 292 31 219 167 0 0 chr21 9218394 9218436 -25689134 + (TG)n Simple_repeat Simple_repeat 2 43 0 1204 119 5 25 chr21 9219714 9219915 -25687655 + L1PA11 LINE L1 5977 6173 -1 2420 49 0 7 chr21 9220166 9220470 -25687100 + AluY SINE Alu 1 302 -9 926 201 67 24 chr21 9221486 9221695 -25685875 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 9222473 9222501 -25685069 + AT_rich Low_complexity Low_complexity 1 28 0 578 250 0 8 chr21 9222709 9222829 -25684741 + MER45A DNA AcHobo 59 177 -1 1596 195 7 0 chr21 9222995 9223292 -25684278 + L1PB4 LINE L1 5808 6106 -50 2663 98 5 5 chr21 9223292 9223668 -25683902 + MLT2A1 LTR ERVL 1 376 -68 326 213 31 6 chr21 9223706 9223870 -25683700 + (TA)n Simple_repeat Simple_repeat 1 168 0 359 80 0 2147483648 chr21 9223839 9223907 -25683663 + MLT2A1 LTR ERVL 390 444 0 243 125 0 21 chr21 9223907 9223955 -25683615 + L1PA16 LINE L1 6102 6148 -18 337 266 89 32 chr21 9223981 9224105 -25683465 - MER20 DNA MER1_type -8 211 81 1942 131 10 10 chr21 9224677 9224989 -25682581 + AluSx SINE Alu 1 312 0 25 0 0 0 chr21 9226124 9226149 -25681421 + AT_rich Low_complexity Low_complexity 1 25 0 2205 69 3 38 chr21 9226820 9227140 -25680430 + AluY SINE Alu 1 309 -2 339 345 99 0 chr21 9227323 9227494 -25680076 - MIR SINE MIR -74 188 1 28 61 0 0 chr21 9228085 9228134 -25679436 + AT_rich Low_complexity Low_complexity 1 49 0 327 308 15 15 chr21 9228355 9228553 -25679017 + L1MC/D LINE L1 2190 2387 -3759 1971 148 0 0 chr21 9228679 9228977 -25678593 - AluSx SINE Alu -14 298 1 1918 162 0 10 chr21 9229526 9229929 -25677641 - AluJb SINE Alu 0 405 6 21 0 0 0 chr21 9230391 9230412 -25677158 + AT_rich Low_complexity Low_complexity 1 21 0 325 257 80 70 chr21 9230646 9230783 -25676787 + L1MC/D LINE L1 2676 2817 -3329 2428 151 51 7 chr21 9230783 9231193 -25676377 - MSTA LTR MaLR 0 428 1 325 257 80 70 chr21 9231193 9231242 -25676328 + L1MC/D LINE L1 2817 2864 -3282 218 274 0 12 chr21 9231357 9231441 -25676129 + A-rich Low_complexity Low_complexity 6 88 0 2571 42 0 0 chr21 9232674 9232980 -25674590 + AluY SINE Alu 1 306 -5 553 258 85 31 chr21 9232993 9233253 -25674317 + L1MC/D LINE L1 5286 5559 -2249 5091 159 13 8 chr21 9233282 9234568 -25673002 - L1PA16 LINE L1 -4 6162 4874 5520 221 17 15 chr21 9234569 9235873 -25671697 + L1P LINE L1 3382 4688 -1458 295 225 12 0 chr21 9235875 9235955 -25671615 + L1 LINE L1 4786 4866 -1280 190 143 41 0 chr21 9236236 9236285 -25671285 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 191 273 15 30 chr21 9236702 9236768 -25670802 + MIR SINE MIR 82 146 -62 1911 126 4 4 chr21 9236959 9237284 -25670286 + AluSc SINE Alu 1 325 0 33 43 0 0 chr21 9237498 9237545 -25670025 + AT_rich Low_complexity Low_complexity 1 47 0 317 118 24 24 chr21 9237545 9237630 -25669940 + (TA)n Simple_repeat Simple_repeat 2 86 0 367 51 17 17 chr21 9238623 9238682 -25668888 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6413 65 33 4 chr21 9239226 9240199 -25667371 - L1PA7 LINE L1 -6 6148 5151 21341 118 13 16 chr21 9240201 9244616 -25662954 + L1P3 LINE L1 2 4430 -2031 261 0 0 0 chr21 9244971 9245000 -25662570 + (TG)n Simple_repeat Simple_repeat 2 30 0 4928 116 7 7 chr21 9245707 9246438 -25661132 + LTR17 LTR ERV1 1 731 -49 24 32 0 0 chr21 9246490 9246521 -25661049 + AT_rich Low_complexity Low_complexity 1 31 0 2072 226 117 5 chr21 9247270 9247859 -25659711 + L1MC4 LINE L1 7080 7734 -308 21 57 0 0 chr21 9248275 9248310 -25659260 + AT_rich Low_complexity Low_complexity 1 35 0 299 109 0 0 chr21 9248481 9248527 -25659043 + MADE1 DNA Mariner 35 80 0 438 141 65 33 chr21 9249591 9249683 -25657887 + MLT1J2 LTR MaLR 335 429 -21 220 402 0 0 chr21 9250191 9250298 -25657272 - MIR SINE MIR -33 229 123 225 65 0 0 chr21 9253164 9253195 -25654375 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1959 143 7 10 chr21 9253730 9254038 -25653532 - AluSx SINE Alu 0 312 6 21 36 0 0 chr21 9254621 9254649 -25652921 + AT_rich Low_complexity Low_complexity 1 28 0 7957 87 11 0 chr21 9254724 9256142 -25651428 + L1P3 LINE L1 4242 5670 -484 318 50 0 0 chr21 9256412 9256452 -25651118 + (CA)n Simple_repeat Simple_repeat 2 41 0 670 131 0 0 chr21 9256508 9256607 -25650963 + AluSp/q SINE Alu 187 285 -28 1839 169 22 34 chr21 9257261 9257522 -25650048 - MER47A DNA MER2_type -1960 363 106 2045 131 123 11 chr21 9257522 9257903 -25649667 - MSTA LTR MaLR -4 424 1 1839 169 22 34 chr21 9257903 9257996 -25649574 - MER47A DNA MER2_type -2217 106 13 1381 244 110 21 chr21 9258029 9258447 -25649123 - MLT2B1 LTR ERVL -65 455 1 240 86 0 0 chr21 9260338 9260373 -25647197 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 185 243 81 27 chr21 9260866 9260940 -25646630 + MER5B DNA MER1_type 101 178 0 207 278 14 14 chr21 9261005 9261077 -25646493 - MER5B DNA MER1_type -80 98 27 25 0 0 0 chr21 9261388 9261413 -25646157 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 9261528 9261563 -25646007 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr21 9263767 9263798 -25643772 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr21 9264226 9264268 -25643302 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr21 9264290 9264320 -25643250 + AT_rich Low_complexity Low_complexity 1 30 0 222 315 47 34 chr21 9264585 9264734 -25642836 + L2 LINE L2 1865 2015 -1299 1369 242 65 55 chr21 9265168 9265746 -25641824 + MLT1E3 LTR MaLR 70 624 0 1318 271 80 8 chr21 9265746 9266245 -25641325 - L1ME3A LINE L1 -88 6082 5548 641 304 92 50 chr21 9266316 9266793 -25640777 - L1ME3A LINE L1 -912 5234 4738 369 0 0 0 chr21 9266883 9266924 -25640646 + (CA)n Simple_repeat Simple_repeat 2 42 0 32 26 0 0 chr21 9267051 9267090 -25640480 + AT_rich Low_complexity Low_complexity 1 39 0 376 269 50 17 chr21 9268022 9268141 -25639429 - L1ME3A LINE L1 -2140 4006 3884 1114 199 20 10 chr21 9268273 9268686 -25638884 - LTR54 LTR ERV1 0 510 8 24 67 0 0 chr21 9269959 9270004 -25637566 + AT_rich Low_complexity Low_complexity 1 45 0 2063 106 3 0 chr21 9271465 9271776 -25635794 + AluSq SINE Alu 1 312 0 417 198 0 0 chr21 9271776 9271862 -25635708 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 192 97 0 0 chr21 9272620 9272651 -25634919 + (TC)n Simple_repeat Simple_repeat 2 32 0 191 356 148 0 chr21 9272738 9272853 -25634717 + MIR SINE MIR 52 183 -79 350 294 28 18 chr21 9273480 9273589 -25633981 - MIR SINE MIR -59 149 40 4309 20 0 0 chr21 9273617 9274300 -25633270 + L1P1 LINE L1 5074 5756 -399 1073 136 90 11 chr21 9275968 9276145 -25631425 - AluSg SINE Alu -118 192 2 897 217 30 5 chr21 9276268 9276471 -25631099 - MER3 DNA MER1_type -1 208 1 10289 103 14 0 chr21 9276842 9278194 -25629376 + L1PA8 LINE L1 3841 5202 -970 2246 99 0 7 chr21 9278194 9278496 -25629074 + AluSg SINE Alu 1 300 -10 10289 103 14 0 chr21 9278496 9279477 -25628093 + L1PA8 LINE L1 5202 6167 -5 588 218 59 68 chr21 9281002 9281364 -25626206 - LTR37A LTR ERV1 0 426 42 22 56 0 0 chr21 9281371 9281407 -25626163 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr21 9281567 9281588 -25625982 + AT_rich Low_complexity Low_complexity 1 21 0 511 291 26 0 chr21 9282539 9282690 -25624880 + MIR SINE MIR 56 210 -52 652 230 0 0 chr21 9283112 9283238 -25624332 + FRAM SINE Alu 1 123 -53 1832 205 32 15 chr21 9283238 9283642 -25623928 - L1MA10 LINE L1 -21 6313 5903 1979 177 7 27 chr21 9283631 9284043 -25623527 + L1MA10 LINE L1 5483 5886 -282 195 69 0 0 chr21 9285366 9285395 -25622175 + (TAA)n Simple_repeat Simple_repeat 2 30 0 211 234 0 0 chr21 9285551 9285598 -25621972 + (TA)n Simple_repeat Simple_repeat 2 48 0 222 96 39 19 chr21 9288290 9288342 -25619228 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 535 73 0 0 chr21 9288657 9288755 -25618815 - AluSp/q SINE Alu 0 318 221 184 29 29 29 chr21 9290266 9290300 -25617270 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 1773 85 127 0 chr21 9290660 9290919 -25616651 + AluSg SINE Alu 1 292 -8 24 0 0 0 chr21 9291050 9291074 -25616496 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr21 9291145 9291181 -25616389 + AT_rich Low_complexity Low_complexity 1 36 0 287 260 30 30 chr21 9291212 9291381 -25616189 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 29 78 0 0 chr21 9291444 9291508 -25616062 + AT_rich Low_complexity Low_complexity 1 64 0 345 47 0 0 chr21 9291741 9291784 -25615786 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 25 0 0 0 chr21 9293082 9293107 -25614463 + AT_rich Low_complexity Low_complexity 1 25 0 2235 47 0 43 chr21 9293473 9293772 -25613798 - AluY SINE Alu -9 302 17 369 0 0 0 chr21 9293886 9293927 -25613643 + (A)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 9294403 9294425 -25613145 + AT_rich Low_complexity Low_complexity 1 22 0 2115 81 20 14 chr21 9294702 9294998 -25612572 + AluSp SINE Alu 1 298 -15 5385 154 24 25 chr21 9295830 9296951 -25610619 - L1MA5 LINE L1 -1 7001 5880 5945 209 51 14 chr21 9296944 9297322 -25610248 - L1MA5 LINE L1 -1357 5491 5129 1951 153 0 13 chr21 9297322 9297629 -25609941 - AluSx SINE Alu -9 303 1 5945 209 51 14 chr21 9297629 9299207 -25608363 - L1MA5 LINE L1 -1719 5129 3076 5582 231 55 19 chr21 9299213 9299928 -25607642 - L1MA5 LINE L1 -3816 3032 2344 1693 145 39 7 chr21 9299928 9300083 -25607487 - AluSx SINE Alu -21 291 122 279 0 0 0 chr21 9300083 9300114 -25607456 + (TG)n Simple_repeat Simple_repeat 1 31 0 1693 145 39 7 chr21 9300114 9300240 -25607330 - AluSx SINE Alu -190 122 1 5582 231 55 19 chr21 9300240 9300478 -25607092 - L1MA5 LINE L1 -4504 2344 2116 216 0 0 0 chr21 9300478 9300502 -25607068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5582 231 55 19 chr21 9300502 9300656 -25606914 - L1MA5 LINE L1 -4732 2116 1969 333 0 0 0 chr21 9300656 9300693 -25606877 + (TA)n Simple_repeat Simple_repeat 2 38 0 5582 231 55 19 chr21 9300693 9301284 -25606286 - L1MA5 LINE L1 -4879 1969 1269 526 282 31 41 chr21 9301349 9301544 -25606026 - L1MA5 LINE L1 -6267 582 390 736 253 61 61 chr21 9301564 9301841 -25605729 - L1MA5 LINE L1 -6562 287 11 204 303 119 18 chr21 9301940 9302049 -25605521 + MIR3 SINE MIR 83 202 -6 2037 150 33 11 chr21 9303609 9303976 -25603594 - THE1C LTR MaLR 0 375 1 2651 32 0 0 chr21 9304698 9305007 -25602563 + AluY SINE Alu 1 309 -2 21 82 0 0 chr21 9305681 9305730 -25601840 + AT_rich Low_complexity Low_complexity 1 49 0 2003 120 0 7 chr21 9306691 9307139 -25600431 + AluSq SINE Alu 13 458 0 933 227 23 2 chr21 9307217 9307449 -25600121 + MLT1A1 LTR MaLR 1 251 -123 1620 162 18 7 chr21 9307881 9308158 -25599412 + AluSx SINE Alu 1 280 -32 245 144 44 0 chr21 9308162 9308252 -25599318 + (TA)n Simple_repeat Simple_repeat 2 95 0 568 200 44 62 chr21 9308385 9308545 -25599025 - MER20 DNA MER1_type -25 194 38 2077 94 0 7 chr21 9308797 9309083 -25598487 + AluY SINE Alu 1 284 -27 180 0 0 0 chr21 9309096 9309116 -25598454 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2021 107 17 10 chr21 9310016 9310305 -25597265 + AluSp SINE Alu 1 291 -22 23 0 0 0 chr21 9310305 9310328 -25597242 + AT_rich Low_complexity Low_complexity 1 23 0 294 247 113 0 chr21 9310384 9310481 -25597089 + L1ME4a LINE L1 5944 6051 -70 724 226 51 34 chr21 9312899 9313238 -25594332 - MSTD LTR MaLR 0 396 19 334 68 17 17 chr21 9313799 9313858 -25593712 + (TC)n Simple_repeat Simple_repeat 1 59 0 2178 103 17 0 chr21 9314059 9314351 -25593219 - AluSg SINE Alu -13 297 1 378 0 0 0 chr21 9314541 9314583 -25592987 + (TG)n Simple_repeat Simple_repeat 1 42 0 749 203 123 5 chr21 9314587 9314774 -25592796 + MER2 DNA MER2_type 2 210 -134 188 228 18 0 chr21 9316192 9316249 -25591321 + (TAG)n Simple_repeat Simple_repeat 2 59 0 1661 182 24 7 chr21 9316511 9316802 -25590768 - AluSx SINE Alu -16 296 1 1484 272 15 48 chr21 9316807 9317039 -25590531 - L1MD2 LINE L1 -1 6358 6149 1908 167 14 16 chr21 9317039 9317404 -25590166 - MLT1A1 LTR MaLR 0 365 2 1484 272 15 48 chr21 9317404 9317645 -25589925 - L1MD2 LINE L1 -210 6149 5901 247 307 9 53 chr21 9317795 9317909 -25589661 + L2 LINE L2 3205 3313 0 21 0 0 0 chr21 9318289 9318310 -25589260 + AT_rich Low_complexity Low_complexity 1 21 0 281 26 26 0 chr21 9320155 9320193 -25587377 + (TG)n Simple_repeat Simple_repeat 2 40 0 639 249 151 45 chr21 9320355 9320752 -25586818 + LTR33 LTR ERVL 83 521 0 2084 53 85 11 chr21 9321799 9322080 -25585490 + AluY SINE Alu 1 302 -9 23 33 0 0 chr21 9322357 9322387 -25585183 + AT_rich Low_complexity Low_complexity 1 30 0 460 196 10 0 chr21 9323144 9323241 -25584329 + MER5A DNA MER1_type 9 106 -83 21 0 0 0 chr21 9323334 9323355 -25584215 + AT_rich Low_complexity Low_complexity 1 21 0 347 184 142 57 chr21 9323654 9323795 -25583775 + L2 LINE L2 2637 2789 -525 609 258 72 72 chr21 9323888 9324249 -25583321 + L2 LINE L2 2953 3313 0 305 155 42 14 chr21 9324500 9324571 -25582999 - L1MA5A LINE L1 -3 6294 6222 796 138 48 7 chr21 9324571 9324716 -25582854 - THE1B LTR MaLR -5 359 209 253 297 81 27 chr21 9325019 9325130 -25582440 + L2 LINE L2 3197 3313 0 34 55 0 0 chr21 9325440 9325495 -25582075 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr21 9325586 9325607 -25581963 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 9325893 9325943 -25581627 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr21 9325965 9325996 -25581574 + AT_rich Low_complexity Low_complexity 1 31 0 201 330 66 0 chr21 9326468 9326559 -25581011 + L2 LINE L2 2372 2468 -846 233 135 19 0 chr21 9328501 9328553 -25579017 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 22 0 0 0 chr21 9329317 9329339 -25578231 + AT_rich Low_complexity Low_complexity 1 22 0 1491 205 95 31 chr21 9329438 9329882 -25577688 - Tigger6a DNA MER2_type -30 1053 582 2827 215 27 6 chr21 9329881 9330514 -25577056 - Tigger6a DNA MER2_type -433 650 5 403 262 79 0 chr21 9331600 9331726 -25575844 - MIR SINE MIR -26 236 101 2214 131 38 14 chr21 9332416 9332782 -25574788 - THE1C LTR MaLR 0 375 1 254 222 69 0 chr21 9335040 9335112 -25572458 + MLT1I LTR MaLR 90 166 -243 265 330 121 11 chr21 9337541 9337632 -25569938 - L2 LINE L2 -31 3282 3182 393 258 68 74 chr21 9337869 9338059 -25569511 + MLT1F LTR MaLR 149 337 -258 706 288 72 0 chr21 9338053 9338275 -25569295 + MLT1F LTR MaLR 305 542 0 317 321 114 16 chr21 9338654 9338838 -25568732 + L1ME LINE L1 5360 5561 -601 1448 158 0 16 chr21 9339176 9339430 -25568140 + AluJo SINE Alu 63 312 0 24 0 0 0 chr21 9339528 9339552 -25568018 + AT_rich Low_complexity Low_complexity 1 24 0 394 351 40 7 chr21 9340277 9340428 -25567142 - MIR SINE MIR -43 219 64 21 82 0 0 chr21 9340660 9340709 -25566861 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr21 9342428 9342449 -25565121 + AT_rich Low_complexity Low_complexity 1 21 0 351 70 0 0 chr21 9342492 9342549 -25565021 + L1MA2 LINE L1 6248 6304 0 1389 198 65 19 chr21 9343095 9343418 -25564152 - LTR42 LTR ERVL -23 472 135 685 145 24 16 chr21 9343481 9343605 -25563965 - LTR42 LTR ERVL -370 125 1 470 307 42 61 chr21 9344386 9344961 -25562609 - L2 LINE L2 -1030 2284 1276 1644 227 44 57 chr21 9346227 9346774 -25560796 + Charlie1a DNA MER1_type 50 589 -866 2277 88 17 0 chr21 9347932 9348227 -25559343 - AluSq SINE Alu -13 300 1 451 90 0 22 chr21 9349064 9349153 -25558417 + (TG)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr21 9349436 9349457 -25558113 + AT_rich Low_complexity Low_complexity 1 21 0 2339 75 3 7 chr21 9349681 9349987 -25557583 + AluY SINE Alu 3 307 -4 25 0 0 0 chr21 9350100 9350125 -25557445 + AT_rich Low_complexity Low_complexity 1 25 0 907 184 23 6 chr21 9350245 9350419 -25557151 - L1MA9 LINE L1 -232 6080 5904 1110 201 85 61 chr21 9350417 9350745 -25556825 + L1MA9 LINE L1 5553 5888 -424 314 302 0 17 chr21 9351712 9351828 -25555742 + CT-rich Low_complexity Low_complexity 1 114 0 2234 84 7 0 chr21 9353826 9354122 -25553448 - AluSg SINE Alu -12 298 1 27 49 0 0 chr21 9356149 9356190 -25551380 + AT_rich Low_complexity Low_complexity 1 41 0 2041 80 3 27 chr21 9356220 9356520 -25551050 + AluY SINE Alu 3 295 -16 415 220 30 30 chr21 9356826 9356926 -25550644 - MIR SINE MIR -56 206 107 2213 81 0 7 chr21 9356955 9357250 -25550320 - AluSc SINE Alu -13 296 4 30 27 0 0 chr21 9357370 9357407 -25550163 + AT_rich Low_complexity Low_complexity 1 37 0 1299 227 22 22 chr21 9357974 9358295 -25549275 - MER63 DNA MER1_type 0 1061 741 448 128 74 3 chr21 9358466 9358822 -25548748 + (TA)n Simple_repeat Simple_repeat 1 381 0 198 0 0 0 chr21 9359343 9359365 -25548205 + (A)n Simple_repeat Simple_repeat 1 22 0 2452 158 38 14 chr21 9360427 9360932 -25546638 - L1MA4 LINE L1 -3 6297 5781 21 36 0 0 chr21 9360969 9360997 -25546573 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 9362123 9362152 -25545418 + AT_rich Low_complexity Low_complexity 1 29 0 268 198 111 12 chr21 9362363 9362444 -25545126 - L1MA9 LINE L1 -22 6290 6202 746 204 39 23 chr21 9362590 9362882 -25544688 - MLT1A1 LTR MaLR -15 350 1 26 30 0 0 chr21 9363240 9363273 -25544297 + AT_rich Low_complexity Low_complexity 1 33 0 1977 106 4 4 chr21 9364405 9364679 -25542891 - AluSp SINE Alu -39 274 1 1074 224 46 4 chr21 9365014 9365251 -25542319 - MLT1D LTR MaLR -4 501 255 219 309 0 0 chr21 9365274 9365342 -25542228 + CT-rich Low_complexity Low_complexity 3 70 0 1052 202 24 44 chr21 9365342 9365590 -25541980 - MLT1D LTR MaLR -260 245 3 646 297 6 6 chr21 9366435 9366617 -25540953 - MLT1I LTR MaLR -159 250 69 2119 121 0 10 chr21 9367171 9367476 -25540094 - AluSg SINE Alu -8 302 1 1410 184 6 69 chr21 9367817 9368060 -25539510 - AluJo SINE Alu -12 300 80 2382 55 0 39 chr21 9368060 9368371 -25539199 + AluY SINE Alu 2 300 -11 1410 184 6 69 chr21 9368371 9368447 -25539123 - AluJo SINE Alu -232 80 1 1823 145 0 21 chr21 9369571 9369861 -25537709 - AluSx SINE Alu -15 297 14 807 121 16 0 chr21 9370127 9370251 -25537319 - AluSq/x SINE Alu -187 126 1 1871 97 86 0 chr21 9370603 9370871 -25536699 + AluSp SINE Alu 1 291 -22 755 291 62 47 chr21 9372074 9372524 -25535046 + MLT1C LTR MaLR 11 467 0 24 0 0 0 chr21 9372813 9372837 -25534733 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr21 9373617 9373656 -25533914 + AT_rich Low_complexity Low_complexity 1 39 0 1380 227 49 94 chr21 9374383 9375067 -25532503 - L1MC5 LINE L1 -697 7264 6603 2438 74 0 3 chr21 9375473 9375785 -25531785 - AluY SINE Alu 0 311 1 2110 122 10 3 chr21 9377174 9377470 -25530100 + AluSc SINE Alu 1 298 -11 22 0 0 0 chr21 9379295 9379317 -25528253 + AT_rich Low_complexity Low_complexity 1 22 0 251 103 52 69 chr21 9379550 9379608 -25527962 - MLT2B1 LTR ERVL 0 520 464 231 36 0 0 chr21 9379653 9379681 -25527889 + (TA)n Simple_repeat Simple_repeat 2 29 0 477 183 0 0 chr21 9380521 9380603 -25526967 - AluJ/FRAM SINE Alu -17 295 214 384 247 20 20 chr21 9380692 9380838 -25526732 + (TA)n Simple_repeat Simple_repeat 1 146 0 23 33 0 0 chr21 9380889 9380919 -25526651 + AT_rich Low_complexity Low_complexity 1 30 0 1438 199 34 43 chr21 9381045 9381372 -25526198 - MLT2B1 LTR ERVL -196 324 1 2670 268 88 32 chr21 9382130 9382505 -25525065 - L1MDa LINE L1 -1298 5242 4890 5032 69 3 1 chr21 9382505 9383172 -25524398 - L1PA8 LINE L1 0 6172 5505 2670 268 88 32 chr21 9383172 9384164 -25523406 - L1MDa LINE L1 -1650 4890 3798 22 0 0 0 chr21 9384174 9384196 -25523374 + AT_rich Low_complexity Low_complexity 1 22 0 1133 289 73 33 chr21 9384232 9384381 -25523189 - L1MDa LINE L1 -3292 3248 3106 614 65 76 11 chr21 9384381 9384473 -25523097 - L1PA4 LINE L1 -4 6151 6054 1133 289 73 33 chr21 9384473 9384898 -25522672 - L1MDa LINE L1 -3434 3106 2651 460 294 97 42 chr21 9385007 9385316 -25522254 - L1MDa LINE L1 -4828 1712 1387 822 311 52 30 chr21 9387296 9387795 -25519775 + L1MC5 LINE L1 7421 7930 -31 383 38 19 0 chr21 9389672 9389725 -25517845 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 330 298 88 0 chr21 9391075 9391189 -25516381 + MIR SINE MIR 20 143 -119 5900 155 49 22 chr21 9391395 9391437 -25516133 + Tigger3b DNA MER2_type 36 75 -2953 2000 105 20 30 chr21 9391437 9391732 -25515838 + AluSc SINE Alu 1 292 -17 5900 155 49 22 chr21 9391732 9392851 -25514719 + Tigger3b DNA MER2_type 75 1228 -3 219 232 18 18 chr21 9392874 9392930 -25514640 + (TG)n Simple_repeat Simple_repeat 1 56 0 23 68 0 0 chr21 9393400 9393444 -25514126 + AT_rich Low_complexity Low_complexity 1 44 0 233 106 0 21 chr21 9394429 9394476 -25513094 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 195 42 0 0 chr21 9394668 9394692 -25512878 + (TG)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr21 9394691 9394712 -25512858 + (GA)n Simple_repeat Simple_repeat 1 21 0 431 352 38 14 chr21 9396784 9396997 -25510573 - MIR SINE MIR -24 238 21 244 310 103 0 chr21 9398037 9398124 -25509446 - MIR SINE MIR -1 261 166 578 242 76 45 chr21 9398532 9398730 -25508840 - MER77 LTR ERV1 -380 225 22 27 62 0 0 chr21 9398805 9398853 -25508717 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr21 9399305 9399326 -25508244 + AT_rich Low_complexity Low_complexity 1 21 0 2323 70 0 0 chr21 9399326 9399612 -25507958 - AluSg SINE Alu -24 286 1 27 29 0 0 chr21 9400492 9400526 -25507044 + AT_rich Low_complexity Low_complexity 1 34 0 6618 223 39 33 chr21 9400567 9402773 -25504797 + L1MC1 LINE L1 3120 5366 -967 1777 147 7 33 chr21 9402773 9403080 -25504490 + AluJb SINE Alu 1 299 -13 6618 223 39 33 chr21 9403080 9404049 -25503521 + L1MC1 LINE L1 5366 6327 -6 420 302 69 29 chr21 9404417 9404662 -25502908 - MIR SINE MIR -6 256 2 21 57 0 0 chr21 9405998 9406033 -25501537 + AT_rich Low_complexity Low_complexity 1 35 0 2086 97 14 10 chr21 9407039 9407329 -25500241 - AluSq SINE Alu -22 291 1 690 199 31 42 chr21 9407391 9407582 -25499988 + MER53 DNA DNA 1 189 0 23 33 0 0 chr21 9407694 9407724 -25499846 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 9407837 9407861 -25499709 + AT_rich Low_complexity Low_complexity 1 24 0 308 325 110 0 chr21 9408177 9408340 -25499230 - L2 LINE L2 -569 2745 2565 198 344 69 61 chr21 9408343 9408359 -25499211 - L2 LINE L2 -710 2604 2590 2169 109 0 3 chr21 9408359 9408662 -25498908 + AluSc SINE Alu 1 302 -7 198 344 69 61 chr21 9408662 9408892 -25498678 - L2 LINE L2 -724 2590 2356 22 0 0 0 chr21 9409828 9409850 -25497720 + AT_rich Low_complexity Low_complexity 1 22 0 208 238 12 12 chr21 9410809 9410889 -25496681 + CT-rich Low_complexity Low_complexity 1 80 0 195 129 0 0 chr21 9410894 9410925 -25496645 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr21 9411078 9411114 -25496456 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr21 9411543 9411565 -25496005 + AT_rich Low_complexity Low_complexity 1 22 0 37 39 0 0 chr21 9411863 9411914 -25495656 + AT_rich Low_complexity Low_complexity 1 51 0 294 217 11 33 chr21 9412954 9413046 -25494524 - MLT1G1 LTR MaLR 0 626 537 466 289 44 36 chr21 9413107 9413332 -25494238 - MLT1G1 LTR MaLR -206 389 163 243 128 21 0 chr21 9413358 9413405 -25494165 - L1MA4A LINE L1 -7 6296 6249 739 185 56 0 chr21 9413400 9413562 -25494008 - L1 LINE L1 -794 5352 5182 21 36 0 0 chr21 9413643 9413671 -25493899 + AT_rich Low_complexity Low_complexity 1 28 0 597 286 99 89 chr21 9414696 9415018 -25492552 + L2 LINE L2 2894 3222 -91 899 128 0 8 chr21 9415018 9415151 -25492419 + FLAM_C SINE Alu 2 133 0 597 286 99 89 chr21 9415151 9415244 -25492326 + L2 LINE L2 3222 3313 0 23 54 0 0 chr21 9415274 9415311 -25492259 + AT_rich Low_complexity Low_complexity 1 37 0 690 365 4 8 chr21 9416191 9416446 -25491124 - MIR SINE MIR -3 259 6 22 0 0 0 chr21 9417409 9417431 -25490139 + AT_rich Low_complexity Low_complexity 1 22 0 472 232 45 45 chr21 9417536 9417713 -25489857 - MER5B DNA MER1_type 0 178 2 609 311 48 29 chr21 9418776 9419152 -25488418 + L1ME3A LINE L1 5691 6073 -97 25 0 0 0 chr21 9419546 9419571 -25487999 + AT_rich Low_complexity Low_complexity 1 25 0 2050 98 22 0 chr21 9420055 9420359 -25487211 + AluSx SINE Alu 1 310 0 216 0 0 0 chr21 9420548 9420572 -25486998 + (CAA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr21 9421959 9421982 -25485588 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr21 9422383 9422413 -25485157 + AT_rich Low_complexity Low_complexity 1 30 0 751 176 0 22 chr21 9422551 9422687 -25484883 + FLAM_C SINE Alu 1 133 0 714 276 6 11 chr21 9423779 9423953 -25483617 + MIR SINE MIR 22 194 -68 26 30 0 0 chr21 9424520 9424553 -25483017 + AT_rich Low_complexity Low_complexity 1 33 0 375 299 0 56 chr21 9424814 9424958 -25482612 - L2 LINE L2 0 3313 3178 462 352 93 11 chr21 9424990 9425047 -25482523 - L2 LINE L2 -1121 2193 2142 2091 123 7 3 chr21 9425047 9425357 -25482213 + AluSq SINE Alu 1 311 -2 462 352 93 11 chr21 9425357 9425750 -25481820 - L2 LINE L2 -1172 2142 1706 26 50 0 0 chr21 9426361 9426401 -25481169 + AT_rich Low_complexity Low_complexity 1 40 0 2435 81 0 0 chr21 9426594 9426901 -25480669 - AluSc SINE Alu -2 307 1 195 318 0 0 chr21 9427471 9427534 -25480036 - MIR SINE MIR -15 247 185 23 33 0 0 chr21 9427785 9427815 -25479755 + AT_rich Low_complexity Low_complexity 1 30 0 829 197 22 45 chr21 9427815 9428127 -25479443 - L1MA9 LINE L1 -21 6291 5891 1070 278 56 28 chr21 9429227 9429587 -25477983 + LTR16A LTR ERVL 2 371 -79 1849 194 23 59 chr21 9429862 9430232 -25477338 + MSTA LTR MaLR 6 359 -69 2197 118 0 0 chr21 9430232 9430537 -25477033 - AluSx SINE Alu -7 305 1 1849 194 23 59 chr21 9430537 9430604 -25476966 + MSTA LTR MaLR 359 427 -1 22 35 0 0 chr21 9431190 9431219 -25476351 + AT_rich Low_complexity Low_complexity 1 29 0 408 40 0 0 chr21 9431287 9431337 -25476233 + (TG)n Simple_repeat Simple_repeat 2 51 0 180 0 0 0 chr21 9433859 9433879 -25473691 + (T)n Simple_repeat Simple_repeat 1 20 0 641 307 44 9 chr21 9434902 9435162 -25472408 + MER5A DNA MER1_type 1 176 -2 864 238 34 72 chr21 9435195 9435460 -25472110 + MIR SINE MIR 3 257 -5 2284 101 3 0 chr21 9435516 9435823 -25471747 - AluSp SINE Alu -5 308 1 28 0 0 0 chr21 9437388 9437416 -25470154 + AT_rich Low_complexity Low_complexity 1 28 0 219 260 0 0 chr21 9438137 9438187 -25469383 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr21 9438287 9438309 -25469261 + AT_rich Low_complexity Low_complexity 1 22 0 1701 227 8 3 chr21 9438792 9439153 -25468417 - MLT1A1 LTR MaLR -2 363 1 22 35 0 0 chr21 9441953 9441982 -25465588 + AT_rich Low_complexity Low_complexity 1 29 0 1135 188 110 31 chr21 9442348 9442603 -25464967 - AluJo SINE Alu -37 275 1 504 0 0 0 chr21 9444075 9444131 -25463439 + (CA)n Simple_repeat Simple_repeat 2 57 0 213 44 22 44 chr21 9444703 9444748 -25462822 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 182 261 58 14 chr21 9444939 9445008 -25462562 + L2 LINE L2 3145 3216 -56 3250 229 32 24 chr21 9445013 9445846 -25461724 + L1MD2 LINE L1 5493 6332 -27 2263 91 7 0 chr21 9445850 9446147 -25461423 - AluY SINE Alu -12 299 1 192 97 0 0 chr21 9446191 9446222 -25461348 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 236 120 20 0 chr21 9447809 9447859 -25459711 + LTR66 LTR ERVL 164 214 -396 406 141 11 33 chr21 9447859 9447951 -25459619 + (TA)n Simple_repeat Simple_repeat 2 91 0 1736 134 3 35 chr21 9448565 9448855 -25458715 + AluSx SINE Alu 21 301 -11 204 231 0 0 chr21 9448865 9448917 -25458653 + (TG)n Simple_repeat Simple_repeat 2 53 0 262 240 68 103 chr21 9449232 9449378 -25458192 - L2 LINE L2 -10 3303 3163 685 268 104 66 chr21 9450634 9451257 -25456313 + MLT1E1 LTR MaLR 1 647 -7 399 172 106 111 chr21 9451522 9451702 -25455868 + MLT1D LTR MaLR 1 179 -447 498 178 11 11 chr21 9451775 9451865 -25455705 + MLT1D LTR MaLR 301 390 -115 1904 123 8 0 chr21 9451870 9452138 -25455432 + AluSx SINE Alu 1 270 -42 319 136 0 123 chr21 9452141 9452161 -25455409 + MLT1D LTR MaLR 556 577 -49 1527 96 59 14 chr21 9452161 9452381 -25455189 - MER30 DNA MER1_type 0 230 1 319 136 0 123 chr21 9452381 9452441 -25455129 + MLT1D LTR MaLR 577 626 0 6356 172 32 6 chr21 9452499 9453690 -25453880 + Tigger3b DNA MER2_type 10 1231 0 225 200 73 0 chr21 9453861 9453916 -25453654 - MER5A DNA MER1_type -83 106 48 11497 166 20 17 chr21 9453972 9456136 -25451434 + Tigger1 DNA MER2_type 2 2173 -245 21 0 0 0 chr21 9456329 9456350 -25451220 + AT_rich Low_complexity Low_complexity 1 21 0 2993 80 40 0 chr21 9458103 9458530 -25449040 + L1PA10 LINE L1 5724 6167 -1 31 58 0 0 chr21 9458731 9458783 -25448787 + AT_rich Low_complexity Low_complexity 1 52 0 2598 169 43 0 chr21 9458952 9459437 -25448133 + L1PA16 LINE L1 5661 6166 0 21 0 0 0 chr21 9460615 9460636 -25446934 + AT_rich Low_complexity Low_complexity 1 21 0 320 324 117 24 chr21 9461063 9461276 -25446294 + L1MB8 LINE L1 5143 5375 -771 300 357 32 6 chr21 9461532 9461689 -25445881 + L1MB8 LINE L1 5717 5877 -301 26 50 0 0 chr21 9462276 9462316 -25445254 + AT_rich Low_complexity Low_complexity 1 40 0 267 308 26 17 chr21 9462645 9462762 -25444808 - MIR SINE MIR -122 140 23 288 271 93 14 chr21 9463070 9463210 -25444360 - MIR SINE MIR -30 232 82 31 0 0 0 chr21 9463293 9463324 -25444246 + AT_rich Low_complexity Low_complexity 1 31 0 270 0 0 0 chr21 9469865 9469895 -25437675 + (TG)n Simple_repeat Simple_repeat 1 30 0 2291 95 0 3 chr21 9471055 9471361 -25436209 - AluSx SINE Alu -3 309 5 38 0 0 0 chr21 9471675 9471713 -25435857 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr21 9472338 9472360 -25435210 + AT_rich Low_complexity Low_complexity 1 22 0 306 213 0 0 chr21 9473054 9473115 -25434455 + CT-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr21 9473449 9473470 -25434100 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 9473758 9473780 -25433790 + AT_rich Low_complexity Low_complexity 1 22 0 503 205 103 19 chr21 9473891 9474047 -25433523 + MIR SINE MIR 85 253 -9 2685 174 50 18 chr21 9475321 9475936 -25431634 - L1MA7 LINE L1 -6 6285 5651 23 0 0 0 chr21 9476144 9476167 -25431403 + AT_rich Low_complexity Low_complexity 1 23 0 326 289 79 40 chr21 9477029 9477181 -25430389 + MER5B DNA MER1_type 21 178 0 2299 91 0 0 chr21 9477675 9477973 -25429597 + AluSc SINE Alu 1 298 -11 222 295 54 0 chr21 9478882 9479011 -25428559 + (TAGG)n Simple_repeat Simple_repeat 2 137 0 935 247 55 12 chr21 9479038 9479293 -25428277 + MLT1F1 LTR MaLR 6 271 -296 682 162 45 45 chr21 9479356 9479510 -25428060 + MLT1F1 LTR MaLR 406 559 -8 2392 47 0 0 chr21 9480151 9480430 -25427140 + AluY SINE Alu 6 284 -27 273 269 15 0 chr21 9480972 9481039 -25426531 + CT-rich Low_complexity Low_complexity 1 68 0 193 321 0 0 chr21 9481260 9481316 -25426254 - MIR SINE MIR -111 151 96 2358 68 0 3 chr21 9481623 9481915 -25425655 + AluY SINE Alu 21 311 0 182 91 30 0 chr21 9482183 9482216 -25425354 + (TAA)n Simple_repeat Simple_repeat 1 34 0 186 43 0 0 chr21 9482780 9482803 -25424767 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 198 71 0 0 chr21 9484259 9484287 -25423283 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 3781 83 88 0 chr21 9484287 9484830 -25422740 - L1PA8 LINE L1 -24 6148 5558 2079 104 13 0 chr21 9484829 9485147 -25422423 - L1PA8A LINE L1 -810 5336 5015 1632 100 4 0 chr21 9485144 9485374 -25422196 + L1PA8A LINE L1 5327 5557 -574 252 198 83 0 chr21 9485452 9485573 -25421997 + (TATAA)n Simple_repeat Simple_repeat 1 131 0 1768 185 28 11 chr21 9486447 9486803 -25420767 + MLT1A1 LTR MaLR 4 365 0 356 375 60 14 chr21 9487271 9487487 -25420083 - MIR SINE MIR -24 238 13 392 158 0 12 chr21 9488007 9488089 -25419481 + (TG)n Simple_repeat Simple_repeat 2 82 0 208 242 73 73 chr21 9488677 9488801 -25418769 + L2 LINE L2 3111 3234 -79 2123 98 0 11 chr21 9489181 9489496 -25418074 + AluSq SINE Alu 1 312 0 1858 138 44 0 chr21 9490693 9490989 -25416581 - AluSg SINE Alu -1 309 1 464 360 78 44 chr21 9491382 9491968 -25415602 + L1M2 LINE L1 3 608 -6241 463 306 4 28 chr21 9492774 9493022 -25414548 + L1PA16 LINE L1 1371 1612 -5238 423 0 0 0 chr21 9493028 9493075 -25414495 + (CA)n Simple_repeat Simple_repeat 2 48 0 5716 250 24 24 chr21 9493079 9495605 -25411965 + L1PA16 LINE L1 1948 4477 -2372 5132 215 19 8 chr21 9495593 9495820 -25411750 + L1PA16 LINE L1 4680 4903 -1966 2067 130 67 14 chr21 9495820 9496166 -25411404 - THE1B LTR MaLR 0 364 1 5132 215 19 8 chr21 9496166 9496373 -25411197 + L1PA16 LINE L1 4903 5106 -1763 189 0 0 0 chr21 9496373 9496394 -25411176 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 5132 215 19 8 chr21 9496394 9497749 -25409821 + L1PA16 LINE L1 5106 6491 -378 279 133 0 0 chr21 9497775 9497820 -25409750 + (CA)n Simple_repeat Simple_repeat 2 46 0 314 132 24 24 chr21 9497851 9497934 -25409636 + (TA)n Simple_repeat Simple_repeat 2 84 0 295 209 33 44 chr21 9497994 9498085 -25409485 + L1MC4 LINE L1 6614 6703 -1339 513 177 16 8 chr21 9498089 9498213 -25409357 + (TA)n Simple_repeat Simple_repeat 2 126 0 300 241 46 0 chr21 9498213 9498300 -25409270 - L1MC4 LINE L1 -1338 6704 6614 226 196 36 18 chr21 9498300 9498356 -25409214 + (TATG)n Simple_repeat Simple_repeat 1 57 0 288 250 48 0 chr21 9498356 9498440 -25409130 - L1MC4 LINE L1 -1340 6702 6615 551 157 41 7 chr21 9498440 9498587 -25408983 + (TA)n Simple_repeat Simple_repeat 2 153 0 245 286 12 0 chr21 9498588 9498672 -25408898 + L1MC4 LINE L1 6614 6698 -1344 1743 176 55 25 chr21 9498653 9499017 -25408553 + L1PA16 LINE L1 6479 6853 -16 3602 43 2 0 chr21 9499541 9499985 -25407585 + L1PA5 LINE L1 5703 6147 -7 939 133 1 10 chr21 9500006 9500158 -25407412 - L1PA13 LINE L1 -22 6150 6002 180 278 0 0 chr21 9500843 9500879 -25406691 - L2 LINE L2 -16 3256 3221 297 357 64 7 chr21 9504341 9504481 -25403089 - L2 LINE L2 0 3272 3125 1682 55 0 9 chr21 9504949 9505167 -25402403 + L1PA5 LINE L1 5939 6154 0 292 333 11 11 chr21 9505451 9505544 -25402026 + MER5A DNA MER1_type 31 123 -66 333 155 0 0 chr21 9505584 9505642 -25401928 + (CA)n Simple_repeat Simple_repeat 2 59 0 461 67 0 40 chr21 9506043 9506118 -25401452 + (CA)n Simple_repeat Simple_repeat 1 72 0 396 259 35 94 chr21 9506201 9506371 -25401199 + MIR SINE MIR 36 195 -67 214 171 29 43 chr21 9506846 9506916 -25400654 + T-rich Low_complexity Low_complexity 4 72 0 2182 90 7 3 chr21 9506992 9507291 -25400279 + AluSp SINE Alu 1 300 -13 26 0 0 0 chr21 9507466 9507492 -25400078 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr21 9508087 9508131 -25399439 + AT_rich Low_complexity Low_complexity 1 44 0 2571 55 0 0 chr21 9508269 9508578 -25398992 + AluY SINE Alu 3 311 0 31 0 0 0 chr21 9508581 9508612 -25398958 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr21 9509882 9509917 -25397653 + AT_rich Low_complexity Low_complexity 1 35 0 31 58 0 0 chr21 9510023 9510075 -25397495 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr21 9511896 9511917 -25395653 + AT_rich Low_complexity Low_complexity 1 21 0 2091 91 11 0 chr21 9512463 9512748 -25394822 - AluSq SINE Alu -8 305 18 186 43 0 0 chr21 9513275 9513298 -25394272 + (TG)n Simple_repeat Simple_repeat 2 24 0 1970 126 3 31 chr21 9513881 9514199 -25393371 - AluSx SINE Alu -3 309 1 23 68 0 0 chr21 9514247 9514291 -25393279 + AT_rich Low_complexity Low_complexity 1 44 0 30 77 0 0 chr21 9514961 9515026 -25392544 + AT_rich Low_complexity Low_complexity 1 65 0 28 0 0 0 chr21 9517708 9517736 -25389834 + AT_rich Low_complexity Low_complexity 1 28 0 596 222 84 49 chr21 9518095 9518298 -25389272 + MIR SINE MIR 15 224 -38 213 39 0 0 chr21 9518775 9518801 -25388769 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 343 285 103 24 chr21 9519092 9519257 -25388313 - L2 LINE L2 -444 2870 2693 1381 221 62 9 chr21 9521070 9521395 -25386175 + MER2 DNA MER2_type 2 343 -1 26 30 0 0 chr21 9521617 9521650 -25385920 + AT_rich Low_complexity Low_complexity 1 33 0 206 341 98 24 chr21 9522327 9522450 -25385120 - L2 LINE L2 -4 3268 3137 295 298 40 40 chr21 9522605 9522729 -25384841 - L2 LINE L2 -279 2993 2870 198 381 55 48 chr21 9522795 9523105 -25384465 - L2 LINE L2 -460 2854 2543 26 0 0 0 chr21 9523411 9523437 -25384133 + AT_rich Low_complexity Low_complexity 1 26 0 217 250 0 16 chr21 9523849 9523913 -25383657 + L2 LINE L2 2205 2267 -1047 462 298 62 5 chr21 9523927 9524135 -25383435 - MLT1J1 LTR MaLR -25 421 202 180 0 0 0 chr21 9524588 9524608 -25382962 + (CA)n Simple_repeat Simple_repeat 1 20 0 27 49 0 0 chr21 9525024 9525065 -25382505 + AT_rich Low_complexity Low_complexity 1 41 0 551 104 0 0 chr21 9525235 9525312 -25382258 + MADE1 DNA Mariner 4 80 0 349 362 29 43 chr21 9526663 9526939 -25380631 + MLT1I LTR MaLR 99 370 -39 192 40 0 0 chr21 9526994 9527019 -25380551 + (TC)n Simple_repeat Simple_repeat 2 26 0 454 0 16 32 chr21 9529738 9529801 -25377769 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 282 160 0 0 chr21 9530721 9530771 -25376799 + CT-rich Low_complexity Low_complexity 4 53 0 1259 193 70 30 chr21 9530963 9531294 -25376276 + MER2 DNA MER2_type 1 344 0 1273 253 3 6 chr21 9532182 9532530 -25375040 - L1P LINE L1 -783 5363 5017 3265 5 0 0 chr21 9532543 9532911 -25374659 - L1PA2 LINE L1 0 6155 5788 4293 10 0 0 chr21 9532911 9533401 -25374169 + L1PA2 LINE L1 5283 5772 -383 1044 222 50 11 chr21 9533400 9533661 -25373909 - L1P LINE L1 -1119 5027 4757 3852 162 33 4 chr21 9533660 9534389 -25373181 + L1PA16 LINE L1 5391 6166 0 2156 241 82 59 chr21 9534497 9536194 -25371376 - L1ME1 LINE L1 -230 6172 4427 2064 127 0 0 chr21 9536194 9536511 -25371059 + AluSx SINE Alu 1 317 0 2156 241 82 59 chr21 9536511 9536782 -25370788 - L1ME1 LINE L1 -1975 4427 4164 1446 241 25 14 chr21 9536786 9537271 -25370299 - L1ME1 LINE L1 -2878 3504 3015 1436 251 62 13 chr21 9537284 9537712 -25369858 - L1ME1 LINE L1 -3436 2946 2511 2857 116 19 9 chr21 9537712 9538177 -25369393 - L1MA1 LINE L1 0 6302 5833 1436 251 62 13 chr21 9538177 9538384 -25369186 - L1ME1 LINE L1 -3871 2511 2316 1628 246 52 74 chr21 9538569 9539204 -25368366 - MLT1E2 LTR MaLR -5 621 1 249 108 0 0 chr21 9539218 9539255 -25368315 + (CA)n Simple_repeat Simple_repeat 1 37 0 1015 303 34 26 chr21 9539316 9539870 -25367700 - L1ME1 LINE L1 -4551 1833 1295 2269 284 34 52 chr21 9539997 9541177 -25366393 - L1ME1 LINE L1 -5216 1347 190 30 27 0 0 chr21 9541349 9541386 -25366184 + AT_rich Low_complexity Low_complexity 1 37 0 624 291 27 9 chr21 9541846 9542066 -25365504 - L1ME1 LINE L1 -23 6143 5920 351 176 40 14 chr21 9542093 9542167 -25365403 + Tigger1 DNA MER2_type 1264 1339 -1079 272 285 65 23 chr21 9542168 9542382 -25365188 - L1MDa LINE L1 -1413 5127 4905 2355 75 0 3 chr21 9542494 9542799 -25364771 - AluY SINE Alu -7 304 1 853 288 57 48 chr21 9542799 9543472 -25364098 - L1MDa LINE L1 -1626 4914 4236 200 173 39 0 chr21 9543480 9543532 -25364038 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 22 0 0 0 chr21 9543625 9543647 -25363923 + AT_rich Low_complexity Low_complexity 1 22 0 1604 285 49 37 chr21 9543698 9544457 -25363113 - L1MDa LINE L1 -2309 4231 3464 1014 260 57 3 chr21 9544470 9545003 -25362567 - L1MDa LINE L1 -3613 2927 2370 296 258 80 31 chr21 9545177 9545402 -25362168 - L1MDa LINE L1 -4365 2175 1940 228 235 35 35 chr21 9545773 9545858 -25361712 - L1M3de LINE L1 -4658 1995 1911 180 0 0 0 chr21 9545918 9545938 -25361632 + (TTG)n Simple_repeat Simple_repeat 2 21 0 360 216 202 32 chr21 9545986 9546204 -25361366 - L1MDa LINE L1 -5274 1266 1012 847 29 0 0 chr21 9547430 9547532 -25360038 - L1PA5 LINE L1 -4 6150 6049 2214 104 0 25 chr21 9547684 9548002 -25359568 - AluSx SINE Alu -2 310 1 489 224 75 0 chr21 9548058 9548219 -25359351 + LTR55 LTR ERV 74 246 -302 23 86 0 0 chr21 9548651 9548709 -25358861 + AT_rich Low_complexity Low_complexity 1 58 0 1438 201 29 7 chr21 9548709 9548988 -25358582 - AluJb SINE Alu -22 290 6 24 0 0 0 chr21 9549433 9549457 -25358113 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr21 9549665 9549710 -25357860 + AT_rich Low_complexity Low_complexity 1 45 0 739 139 0 23 chr21 9550171 9550300 -25357270 + FRAM SINE Alu 46 171 -5 2104 112 11 0 chr21 9550525 9550812 -25356758 + AluSg SINE Alu 7 296 -14 2261 194 23 5 chr21 9552305 9552883 -25354687 - L1P LINE L1 -743 5403 4833 4079 144 40 19 chr21 9552887 9553611 -25353959 + L1PA16 LINE L1 5407 6145 -21 533 77 13 0 chr21 9555281 9555359 -25352211 + L1PA5 LINE L1 6073 6151 -3 25 90 0 0 chr21 9556189 9556256 -25351314 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr21 9557822 9557843 -25349727 + AT_rich Low_complexity Low_complexity 1 21 0 482 137 0 0 chr21 9558230 9558303 -25349267 - AluSc SINE Alu -228 81 9 1271 85 0 0 chr21 9558322 9558486 -25349084 + AluSc SINE Alu 140 303 -6 258 45 296 0 chr21 9558639 9558683 -25348887 - L1PA16 LINE L1 -9 6157 6101 398 240 60 20 chr21 9558683 9558783 -25348787 + L1MB8 LINE L1 5947 6050 -128 610 196 65 46 chr21 9558827 9558980 -25348590 - MLT1B LTR MaLR -234 156 1 25 31 0 0 chr21 9559167 9559199 -25348371 + AT_rich Low_complexity Low_complexity 1 32 0 1317 273 69 37 chr21 9559207 9559231 -25348339 - L1MEc LINE L1 -2338 3877 3855 5649 151 76 26 chr21 9559231 9560110 -25347460 + Tigger3b DNA MER2_type 1 955 -2073 2073 110 28 0 chr21 9560110 9560401 -25347169 - AluSx SINE Alu -12 300 2 5649 151 76 26 chr21 9560401 9560693 -25346877 + Tigger3b DNA MER2_type 955 1231 0 1317 273 69 37 chr21 9560693 9561405 -25346165 - L1MEc LINE L1 -2360 3855 3117 434 230 10 0 chr21 9561803 9561903 -25345667 - L1MEc LINE L1 -3603 2612 2512 521 260 81 12 chr21 9562039 9562297 -25345273 - L1MEc LINE L1 -5263 1133 858 1347 215 31 3 chr21 9562303 9562591 -25344979 - AluJb SINE Alu -14 298 3 352 65 0 32 chr21 9562673 9562735 -25344835 + (TA)n Simple_repeat Simple_repeat 1 60 0 1726 143 14 7 chr21 9562762 9563042 -25344528 - AluSx SINE Alu -30 282 1 1948 136 0 23 chr21 9563054 9563363 -25344207 - AluSg SINE Alu -8 302 1 1516 290 32 19 chr21 9563366 9563959 -25343611 - L1MEc LINE L1 -5580 816 216 1605 127 104 15 chr21 9565120 9565388 -25342182 - AluSx SINE Alu -20 292 1 26 74 0 0 chr21 9565611 9565665 -25341905 + AT_rich Low_complexity Low_complexity 1 54 0 257 171 0 0 chr21 9565906 9565947 -25341623 - MER112 DNA MER1_type -215 45 5 24 0 0 0 chr21 9566276 9566300 -25341270 + AT_rich Low_complexity Low_complexity 1 24 0 1316 47 23 0 chr21 9567556 9567728 -25339842 + L1PA4 LINE L1 5978 6153 -2 21 36 0 0 chr21 9567927 9567955 -25339615 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 9568836 9568865 -25338705 + AT_rich Low_complexity Low_complexity 1 29 0 253 360 0 0 chr21 9569105 9569194 -25338376 + (TA)n Simple_repeat Simple_repeat 1 89 0 233 274 48 16 chr21 9571901 9571963 -25335607 + MIR SINE MIR 13 76 -186 190 302 0 0 chr21 9572408 9572461 -25335109 + MER5A DNA MER1_type 36 88 -101 855 264 45 106 chr21 9573372 9573959 -25333611 - MLT1G1 LTR MaLR -13 529 16 551 281 18 12 chr21 9573969 9574136 -25333434 - MIR SINE MIR -73 189 22 8599 163 43 2 chr21 9574425 9574509 -25333061 + L1MA1 LINE L1 15 94 -7471 366 23 0 0 chr21 9574509 9574552 -25333018 + (CA)n Simple_repeat Simple_repeat 2 44 0 8599 163 43 2 chr21 9574552 9576975 -25330595 + L1MA1 LINE L1 94 2691 -4874 341 82 0 0 chr21 9577019 9577068 -25330502 + L1MA1 LINE L1 2672 2720 -4845 13561 157 34 34 chr21 9577063 9581372 -25326198 + L1MA1 LINE L1 3413 7721 0 27 0 0 0 chr21 9581372 9581399 -25326171 + AT_rich Low_complexity Low_complexity 1 27 0 2122 62 9 100 chr21 9581962 9582303 -25325267 + AluY SINE Alu 1 310 -1 21 71 0 0 chr21 9582707 9582749 -25324821 + AT_rich Low_complexity Low_complexity 1 42 0 239 0 0 31 chr21 9582890 9582922 -25324648 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1663 145 0 15 chr21 9582922 9583186 -25324384 - AluSx SINE Alu -32 280 21 1360 172 6 114 chr21 9583226 9583435 -25324135 - AluJb SINE Alu -5 297 136 180 0 0 0 chr21 9583435 9583455 -25324115 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1360 172 6 114 chr21 9583455 9583577 -25323993 - AluJb SINE Alu -166 136 2 323 262 83 35 chr21 9583695 9583840 -25323730 + MIR SINE MIR 54 205 -57 306 129 14 14 chr21 9583901 9583971 -25323599 + L1PA6 LINE L1 6080 6149 -5 22 0 0 0 chr21 9583977 9583999 -25323571 + AT_rich Low_complexity Low_complexity 1 22 0 1494 118 0 35 chr21 9584006 9584234 -25323336 - AluSg/x SINE Alu -8 302 83 1688 137 0 99 chr21 9586310 9586653 -25320917 + AluSx SINE Alu 3 311 -1 404 135 14 0 chr21 9586664 9586738 -25320832 + GA-rich Low_complexity Low_complexity 4 78 0 1988 101 25 0 chr21 9586760 9587065 -25320505 - AluSx SINE Alu 0 312 1 27 0 0 0 chr21 9587520 9587547 -25320023 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr21 9587688 9587711 -25319859 + AT_rich Low_complexity Low_complexity 1 23 0 2064 93 7 0 chr21 9587866 9588144 -25319426 + AluSp SINE Alu 2 281 -32 351 0 0 0 chr21 9588144 9588183 -25319387 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 24 53 0 0 chr21 9589000 9589038 -25318532 + AT_rich Low_complexity Low_complexity 1 38 0 218 200 20 0 chr21 9589619 9589669 -25317901 + (CA)n Simple_repeat Simple_repeat 1 51 0 23 68 0 0 chr21 9591128 9591172 -25316398 + AT_rich Low_complexity Low_complexity 1 44 0 1051 338 43 18 chr21 9591717 9592223 -25315347 + L2 LINE L2 950 1468 -1846 189 74 0 0 chr21 9592384 9592411 -25315159 + (CA)n Simple_repeat Simple_repeat 2 28 0 1608 288 130 34 chr21 9592444 9593052 -25314518 + L2 LINE L2 1814 2508 -806 429 220 0 0 chr21 9593052 9593143 -25314427 - L1PA15 LINE L1 -7 6158 6068 1608 288 130 34 chr21 9593143 9593278 -25314292 + L2 LINE L2 2508 2629 -685 346 143 36 0 chr21 9593284 9593340 -25314230 - MER57B LTR ERV1 -195 239 182 293 345 84 0 chr21 9593350 9593469 -25314101 + L2 LINE L2 2642 2770 -544 923 152 12 30 chr21 9593549 9593714 -25313856 - FRAM SINE Alu -15 161 1 411 211 0 0 chr21 9595750 9595845 -25311725 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 321 26 0 0 chr21 9596391 9596429 -25311141 + (TG)n Simple_repeat Simple_repeat 2 39 0 1138 275 35 33 chr21 9596476 9597022 -25310548 + L1MEc LINE L1 606 1152 -5244 393 154 66 55 chr21 9597037 9597128 -25310442 - L1P5 LINE L1 -495 5659 5568 280 228 0 0 chr21 9597897 9597954 -25309616 - L1MC5 LINE L1 -74 7887 7831 568 179 0 0 chr21 9598398 9598504 -25309066 - L1PB4 LINE L1 -8 6148 6043 589 367 22 0 chr21 9598833 9599062 -25308508 - MIR SINE MIR -26 236 3 22 0 0 0 chr21 9599168 9599190 -25308380 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr21 9599217 9599258 -25308312 + AT_rich Low_complexity Low_complexity 1 41 0 247 344 82 28 chr21 9599427 9599606 -25307964 + L2 LINE L2 2461 2662 -652 1774 174 28 25 chr21 9599606 9599968 -25307602 - MLT1A1 LTR MaLR -2 363 1 247 344 82 28 chr21 9599968 9600070 -25307500 + L2 LINE L2 2662 2757 -557 2818 209 71 32 chr21 9600112 9600889 -25306681 - L1MB8 LINE L1 -2 6176 5370 544 283 94 16 chr21 9601827 9602018 -25305552 + MIR SINE MIR 23 228 -34 22 0 0 0 chr21 9602081 9602103 -25305467 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr21 9603022 9603049 -25304521 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr21 9605689 9605711 -25301859 + AT_rich Low_complexity Low_complexity 1 22 0 1411 41 0 0 chr21 9606150 9606321 -25301249 + L1PA3 LINE L1 5983 6153 -2 237 33 0 0 chr21 9606351 9606381 -25301189 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 30 77 0 0 chr21 9606807 9606872 -25300698 + AT_rich Low_complexity Low_complexity 1 65 0 482 296 43 31 chr21 9608324 9608581 -25298989 - L1ME1 LINE L1 -6 6094 5835 374 78 0 16 chr21 9608625 9608689 -25298881 - L1MA9 LINE L1 -10 6302 6240 4453 184 41 17 chr21 9608708 9609774 -25297796 - L1MA7 LINE L1 -2 6289 5198 436 291 58 5 chr21 9609811 9610000 -25297570 - L1ME1 LINE L1 -328 5772 5574 1306 271 51 9 chr21 9610302 9610874 -25296696 - L1ME1 LINE L1 -2884 3196 2601 2998 115 22 2 chr21 9610917 9611361 -25296209 - MLT2A2 LTR ERVL 0 453 1 263 272 136 0 chr21 9611420 9611523 -25296047 - L1ME1 LINE L1 -3591 2489 2373 1265 229 49 46 chr21 9611530 9611941 -25295629 - MLT1D LTR MaLR 0 505 94 595 268 66 16 chr21 9612029 9612272 -25295298 - L1ME1 LINE L1 -3731 2349 2095 219 69 0 0 chr21 9612644 9612673 -25294897 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 627 294 45 59 chr21 9612950 9613665 -25293905 - L1ME1 LINE L1 -4473 1607 895 2050 109 0 51 chr21 9613665 9613977 -25293593 - AluSg SINE Alu -14 296 1 627 294 45 59 chr21 9613977 9614313 -25293257 - L1ME1 LINE L1 -5185 895 556 321 333 109 6 chr21 9614383 9614539 -25293031 - L1ME1 LINE L1 -5578 492 321 29 28 0 0 chr21 9614945 9614981 -25292589 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr21 9615407 9615441 -25292129 + AT_rich Low_complexity Low_complexity 1 34 0 417 39 0 0 chr21 9616519 9616570 -25291000 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr21 9616984 9617014 -25290556 + AT_rich Low_complexity Low_complexity 1 30 0 793 222 24 12 chr21 9618303 9618323 -25289247 - MLT1A2 LTR MaLR -212 162 144 411 21 0 0 chr21 9618323 9618371 -25289199 + (CA)n Simple_repeat Simple_repeat 1 48 0 793 222 24 12 chr21 9618371 9618541 -25289029 - MLT1A2 LTR MaLR -230 144 9 422 329 35 31 chr21 9619472 9619700 -25287870 - L2 LINE L2 -281 3032 2804 1064 200 0 9 chr21 9619826 9620046 -25287524 + Charlie5 DNA MER1_type 2234 2451 -161 2850 168 37 18 chr21 9620072 9620219 -25287351 - L1MA4 LINE L1 -1 6299 6156 2293 138 6 6 chr21 9620219 9620581 -25286989 - THE1B LTR MaLR 0 364 3 2850 168 37 18 chr21 9620581 9621006 -25286564 - L1MA4 LINE L1 -144 6156 5716 2061 102 0 0 chr21 9621014 9621289 -25286281 - AluSc SINE Alu -29 280 6 488 250 6 61 chr21 9621501 9621665 -25285905 - L2 LINE L2 -544 2770 2616 609 235 0 0 chr21 9622218 9622333 -25285237 + FLAM_A SINE Alu 1 115 -18 213 94 0 0 chr21 9622336 9622368 -25285202 + (TAA)n Simple_repeat Simple_repeat 1 32 0 6213 85 11 1 chr21 9623099 9624503 -25283067 - L1PA13 LINE L1 -19 6144 4743 2319 50 4 0 chr21 9625623 9625904 -25281666 - AluY SINE Alu 0 311 30 1921 135 3 35 chr21 9626196 9626507 -25281063 + AluSx SINE Alu 1 301 -11 3483 188 22 1 chr21 9626579 9627569 -25280001 + L1P5 LINE L1 4553 5559 -592 3508 186 60 34 chr21 9627573 9628909 -25278661 - MER52A LTR ERV1 0 1755 204 3650 112 52 0 chr21 9629004 9629567 -25278003 + L1PB1 LINE L1 5559 6150 -1 1080 279 43 30 chr21 9629988 9630357 -25277213 - MER87 LTR ERV1 0 541 168 27 29 0 0 chr21 9630709 9630743 -25276827 + AT_rich Low_complexity Low_complexity 1 34 0 901 126 74 0 chr21 9631740 9631875 -25275695 - AluSg/x SINE Alu -14 296 152 2849 194 79 9 chr21 9632350 9632983 -25274587 - L1MA7 LINE L1 -5 6286 5610 4361 75 33 4 chr21 9632983 9633985 -25273585 + MER11A LTR ERVK 1 1266 0 1568 185 28 6 chr21 9633985 9634309 -25273261 - L1MA7 LINE L1 -697 5615 5285 281 189 0 14 chr21 9635399 9635417 -25272153 + (TATATG)n Simple_repeat Simple_repeat 2 19 -55 1679 143 110 33 chr21 9635417 9635753 -25271817 + THE1B LTR MaLR 3 364 0 281 189 0 14 chr21 9635753 9635808 -25271762 + (TATATG)n Simple_repeat Simple_repeat 19 74 0 440 319 6 0 chr21 9635812 9635978 -25271592 + (TA)n Simple_repeat Simple_repeat 2 168 0 21 36 0 0 chr21 9636077 9636105 -25271465 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr21 9636622 9636652 -25270918 + AT_rich Low_complexity Low_complexity 1 30 0 1628 181 60 77 chr21 9637236 9637701 -25269869 - MER31B LTR ERV1 -9 457 1 28 29 0 0 chr21 9639563 9639598 -25267972 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr21 9639891 9639926 -25267644 + AT_rich Low_complexity Low_complexity 1 35 0 2234 65 0 71 chr21 9640971 9641293 -25266277 + AluY SINE Alu 1 299 -12 2305 90 0 0 chr21 9641869 9642159 -25265411 + AluSc SINE Alu 1 290 -19 313 219 0 0 chr21 9642162 9642226 -25265344 + L1MC4 LINE L1 6640 6703 -1339 381 233 5 34 chr21 9642184 9642302 -25265268 - L1MC4 LINE L1 -1339 6703 6614 22 70 0 0 chr21 9642584 9642627 -25264943 + AT_rich Low_complexity Low_complexity 1 43 0 1347 236 39 32 chr21 9643193 9643572 -25263998 - MLT1B LTR MaLR -5 366 4 12958 147 19 38 chr21 9644640 9645601 -25261969 - Tigger1 DNA MER2_type 0 2418 1440 2320 74 3 0 chr21 9645601 9645910 -25261660 - AluY SINE Alu -1 310 1 12958 147 19 38 chr21 9645910 9646472 -25261098 - Tigger1 DNA MER2_type -978 1440 869 2475 49 10 0 chr21 9646472 9646776 -25260794 - AluY SINE Alu -4 307 1 12958 147 19 38 chr21 9646776 9647715 -25259855 - Tigger1 DNA MER2_type -1549 869 2 267 157 0 0 chr21 9649226 9649277 -25258293 + (TA)n Simple_repeat Simple_repeat 2 52 0 1491 251 13 0 chr21 9649784 9650162 -25257408 + L1MA4 LINE L1 5912 6294 -6 189 0 0 0 chr21 9650446 9650467 -25257103 + (T)n Simple_repeat Simple_repeat 1 21 0 5678 35 0 0 chr21 9650501 9651179 -25256391 - L1PA4 LINE L1 -1 6154 5477 23 33 0 0 chr21 9651689 9651719 -25255851 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr21 9652124 9652156 -25255414 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr21 9652811 9652838 -25254732 + AT_rich Low_complexity Low_complexity 1 27 0 1427 183 76 3 chr21 9653295 9653601 -25253969 + L1PB4 LINE L1 5840 6151 -3 28 71 0 0 chr21 9654152 9654208 -25253362 + AT_rich Low_complexity Low_complexity 1 56 0 628 318 144 11 chr21 9654554 9654909 -25252661 - L3 LINE CR1 -426 1151 750 2216 110 0 22 chr21 9655890 9656208 -25251362 + AluSq SINE Alu 2 312 -1 463 134 0 12 chr21 9656328 9656410 -25251160 + L1PA6 LINE L1 6069 6149 -5 1210 247 51 20 chr21 9657000 9657352 -25250218 - MLT1A1 LTR MaLR -2 363 1 995 142 23 5 chr21 9658590 9658808 -25248762 + L1MA9 LINE L1 5700 6075 -237 266 332 80 32 chr21 9659068 9659255 -25248315 - MIR SINE MIR -66 196 1 205 169 68 51 chr21 9660008 9660067 -25247503 - MIR SINE MIR -7 255 196 1768 176 7 3 chr21 9661159 9661466 -25246104 - AluSx SINE Alu -4 308 1 1736 127 24 115 chr21 9661538 9661905 -25245665 - THE1C LTR MaLR 0 375 47 2325 88 0 7 chr21 9661905 9662211 -25245359 + AluSc SINE Alu 1 304 -5 1736 127 24 115 chr21 9662211 9662253 -25245317 - THE1C LTR MaLR -328 47 3 210 37 0 0 chr21 9662259 9662286 -25245284 + (TG)n Simple_repeat Simple_repeat 2 28 0 36 77 0 0 chr21 9663844 9663922 -25243648 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr21 9664509 9664531 -25243039 + AT_rich Low_complexity Low_complexity 1 22 0 2145 88 0 14 chr21 9664597 9664945 -25242625 + AluY SINE Alu 1 344 0 210 200 14 43 chr21 9667605 9667675 -25239895 + (TTATA)n Simple_repeat Simple_repeat 1 68 0 1898 140 6 41 chr21 9667899 9668214 -25239356 - AluSx SINE Alu -8 304 1 201 74 0 0 chr21 9668348 9668375 -25239195 + (TTG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr21 9668614 9668641 -25238929 + (TG)n Simple_repeat Simple_repeat 2 28 0 236 327 49 86 chr21 9668641 9669026 -25238544 - L1MEd LINE L1 -5738 381 11 21 0 0 0 chr21 9669048 9669069 -25238501 + AT_rich Low_complexity Low_complexity 1 21 0 1369 218 19 29 chr21 9669940 9670247 -25237323 + AluJo SINE Alu 1 304 -8 2175 85 0 36 chr21 9670262 9670568 -25237002 - AluSx SINE Alu -17 295 1 613 235 50 0 chr21 9671300 9671479 -25236091 - L1MD3 LINE L1 -3 7992 7805 1605 172 6 28 chr21 9671539 9671859 -25235711 + AluSq SINE Alu 1 313 0 761 344 80 17 chr21 9672569 9673031 -25234539 - L2 LINE L2 -4 3309 2819 293 291 94 73 chr21 9673202 9673635 -25233935 - L2 LINE L2 -504 2810 2361 412 289 102 24 chr21 9673673 9673839 -25233731 - L2 LINE L2 -1003 2311 2133 764 60 0 0 chr21 9674124 9674224 -25233346 - L1P LINE L1 -3106 3040 2941 2657 53 3 3 chr21 9674226 9674565 -25233005 + L1PA6 LINE L1 5803 6141 -13 15386 141 11 6 chr21 9675050 9677646 -25229924 - L1PA8 LINE L1 -2065 4081 1473 8053 117 9 1 chr21 9677645 9679682 -25227888 + L1PA8 LINE L1 4095 6190 0 22 56 0 0 chr21 9680697 9680733 -25226837 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr21 9681041 9681069 -25226501 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 9681306 9681334 -25226236 + AT_rich Low_complexity Low_complexity 1 28 0 233 163 20 0 chr21 9681364 9681413 -25226157 + (TA)n Simple_repeat Simple_repeat 1 50 0 252 59 0 0 chr21 9681426 9681460 -25226110 + (TG)n Simple_repeat Simple_repeat 1 34 0 1478 153 71 19 chr21 9681501 9681769 -25225801 - AluJo SINE Alu -30 282 1 198 0 0 0 chr21 9681911 9681933 -25225637 + (TATG)n Simple_repeat Simple_repeat 2 23 0 369 0 0 0 chr21 9681933 9681974 -25225596 + (CA)n Simple_repeat Simple_repeat 2 42 0 281 270 10 0 chr21 9683309 9683409 -25224161 + (CATA)n Simple_repeat Simple_repeat 4 104 0 271 265 68 83 chr21 9683463 9683595 -25223975 - L2 LINE L2 0 3313 3184 37 23 0 0 chr21 9683621 9683665 -25223905 + AT_rich Low_complexity Low_complexity 1 44 0 486 89 71 18 chr21 9683665 9683833 -25223737 + (TA)n Simple_repeat Simple_repeat 2 178 0 24 0 0 0 chr21 9683834 9683858 -25223712 + AT_rich Low_complexity Low_complexity 1 24 0 180 150 53 35 chr21 9683864 9683977 -25223593 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 32 0 0 0 chr21 9684020 9684052 -25223518 + AT_rich Low_complexity Low_complexity 1 32 0 437 64 96 6 chr21 9684055 9684211 -25223359 + (TA)n Simple_repeat Simple_repeat 1 170 0 227 145 48 36 chr21 9684214 9684297 -25223273 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 316 291 99 33 chr21 9684318 9684500 -25223070 - L2 LINE L2 -168 3145 2952 212 258 61 15 chr21 9685315 9685381 -25222189 - L2 LINE L2 -5 3267 3199 198 0 0 0 chr21 9686350 9686372 -25221198 + (A)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr21 9686854 9686887 -25220683 + AT_rich Low_complexity Low_complexity 1 33 0 476 153 0 0 chr21 9687713 9687798 -25219772 + L1MA9 LINE L1 4964 5048 -1098 1489 248 34 0 chr21 9687801 9688152 -25219418 + MLT1A1 LTR MaLR 3 365 0 2922 232 38 47 chr21 9688152 9688499 -25219071 + MLT1A1-int LTR MaLR 1 349 -1386 2145 125 0 0 chr21 9688499 9688795 -25218775 + AluSg SINE Alu 1 296 -14 2922 232 38 47 chr21 9688795 9689282 -25218288 + MLT1A1-int LTR MaLR 349 828 -907 1337 200 21 14 chr21 9689604 9689889 -25217681 + MLT1A1 LTR MaLR 79 365 0 2068 223 28 52 chr21 9689890 9690982 -25216588 + L1MA9 LINE L1 5046 6106 -206 821 175 44 31 chr21 9691020 9691249 -25216321 + L1MA9 LINE L1 6081 6312 0 346 129 0 32 chr21 9695622 9695684 -25211886 + FLAM SINE Alu 73 132 -1 23 33 0 0 chr21 9696333 9696363 -25211207 + AT_rich Low_complexity Low_complexity 1 30 0 680 196 8 0 chr21 9696445 9696578 -25210992 + FLAM_C SINE Alu 1 134 -9 32 43 0 0 chr21 9696689 9696735 -25210835 + AT_rich Low_complexity Low_complexity 1 46 0 192 77 0 0 chr21 9697717 9697743 -25209827 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 339 149 0 0 chr21 9698514 9698588 -25208982 + (TA)n Simple_repeat Simple_repeat 2 75 0 1558 195 0 49 chr21 9698708 9699036 -25208534 + AluJb SINE Alu 1 312 0 28 71 0 0 chr21 9700899 9700955 -25206615 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr21 9702647 9702668 -25204902 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 9703786 9703822 -25203748 + AT_rich Low_complexity Low_complexity 1 36 0 390 42 0 0 chr21 9704112 9704160 -25203410 + (CA)n Simple_repeat Simple_repeat 2 49 0 369 158 30 0 chr21 9704445 9704546 -25203024 + (TA)n Simple_repeat Simple_repeat 1 104 0 285 241 21 55 chr21 9705918 9706063 -25201507 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 273 115 77 0 chr21 9706123 9706201 -25201369 + (TA)n Simple_repeat Simple_repeat 1 84 0 222 338 60 30 chr21 9706491 9706624 -25200946 + L2 LINE L2 3133 3269 -3 25 31 0 0 chr21 9710296 9710328 -25197242 + AT_rich Low_complexity Low_complexity 1 32 0 2426 59 0 3 chr21 9710446 9710753 -25196817 + AluY SINE Alu 1 306 -5 2510 46 0 3 chr21 9711229 9711535 -25196035 + AluY SINE Alu 1 305 -6 216 360 111 29 chr21 9711591 9711897 -25195673 - L2 LINE L2 -339 2975 2645 207 326 22 11 chr21 9712275 9712364 -25195206 + L2 LINE L2 3223 3312 -1 305 239 65 0 chr21 9712474 9712566 -25195004 - L2 LINE L2 -1266 2048 1951 2068 115 14 0 chr21 9712966 9713254 -25194316 + AluSg SINE Alu 1 292 -18 28 61 0 0 chr21 9713466 9713515 -25194055 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr21 9713611 9713632 -25193938 + AT_rich Low_complexity Low_complexity 1 21 0 36 53 0 0 chr21 9713880 9713937 -25193633 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr21 9715782 9715803 -25191767 + AT_rich Low_complexity Low_complexity 1 21 0 2625 33 0 3 chr21 9717167 9717474 -25190096 + AluY SINE Alu 1 306 -5 23 0 0 0 chr21 9719421 9719444 -25188126 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr21 9719624 9719650 -25187920 + AT_rich Low_complexity Low_complexity 1 26 0 1774 149 3 16 chr21 9720095 9720440 -25187130 - AluSx SINE Alu 0 341 1 329 214 10 0 chr21 9720514 9720612 -25186958 + CT-rich Low_complexity Low_complexity 2 100 0 22 0 0 0 chr21 9721699 9721721 -25185849 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr21 9722676 9722698 -25184872 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr21 9723171 9723202 -25184368 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr21 9723759 9723787 -25183783 + AT_rich Low_complexity Low_complexity 1 28 0 2312 214 4 16 chr21 9724521 9725035 -25182535 - L1MC1 LINE L1 -1 6332 5825 32 0 0 0 chr21 9725963 9725995 -25181575 + AT_rich Low_complexity Low_complexity 1 32 0 204 125 36 18 chr21 9727125 9727181 -25180389 + (TA)n Simple_repeat Simple_repeat 2 58 0 2655 195 26 3 chr21 9727215 9728088 -25179482 - L1P4 LINE L1 -464 5702 4808 2026 161 57 10 chr21 9728098 9728501 -25179069 + L1PA16 LINE L1 5736 6157 -9 26 74 0 0 chr21 9729389 9729443 -25178127 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr21 9730260 9730283 -25177287 + AT_rich Low_complexity Low_complexity 1 23 0 2101 102 20 3 chr21 9730391 9730685 -25176885 - AluSc SINE Alu -10 299 1 25 0 0 0 chr21 9732129 9732154 -25175416 + AT_rich Low_complexity Low_complexity 1 25 0 2326 216 43 4 chr21 9734252 9734781 -25172789 - MER44D DNA MER2_type 0 605 1 26 82 0 0 chr21 9734961 9735022 -25172548 + AT_rich Low_complexity Low_complexity 1 61 0 297 301 58 39 chr21 9735382 9735485 -25172085 + MIR SINE MIR 82 186 -76 1318 123 41 8 chr21 9735936 9736179 -25171391 - L1MA2 LINE L1 0 6304 6054 689 243 9 46 chr21 9736375 9736593 -25170977 + MLT1A2 LTR MaLR 119 328 -46 34 42 0 0 chr21 9736879 9736927 -25170643 + AT_rich Low_complexity Low_complexity 1 48 0 22 88 0 0 chr21 9738215 9738272 -25169298 + AT_rich Low_complexity Low_complexity 1 57 0 2254 81 14 7 chr21 9738655 9738951 -25168619 + AluSc SINE Alu 1 298 -11 336 83 0 0 chr21 9739943 9739991 -25167579 + (T)n Simple_repeat Simple_repeat 1 48 0 752 251 61 42 chr21 9741349 9741679 -25165891 - L1ME2 LINE L1 -25 6139 5804 361 280 120 22 chr21 9741931 9742156 -25165414 - L1ME2 LINE L1 -9 6155 5909 6054 191 35 18 chr21 9742161 9744355 -25163215 - L1MA4 LINE L1 -43 6257 4023 2702 240 17 11 chr21 9744354 9745113 -25162457 - L1MA4 LINE L1 -3012 3134 2371 213 231 8 51 chr21 9745219 9745336 -25162234 + (CATATA)n Simple_repeat Simple_repeat 3 114 0 1883 103 42 0 chr21 9745378 9745640 -25161930 + AluSq SINE Alu 41 313 0 24 0 0 0 chr21 9746133 9746157 -25161413 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 9746634 9746665 -25160905 + AT_rich Low_complexity Low_complexity 1 31 0 227 86 0 0 chr21 9747302 9747337 -25160233 - L1ME2 LINE L1 -253 5911 5877 25 51 0 0 chr21 9747495 9747534 -25160036 + AT_rich Low_complexity Low_complexity 1 39 0 1903 132 54 0 chr21 9748720 9749015 -25158555 + AluSx SINE Alu 1 311 -1 263 273 67 87 chr21 9749119 9749269 -25158301 + MIR SINE MIR 90 236 -26 21 0 0 0 chr21 9749749 9749770 -25157800 + AT_rich Low_complexity Low_complexity 1 21 0 372 328 31 31 chr21 9749858 9750050 -25157520 - L2 LINE L2 -3 3310 3119 588 349 87 30 chr21 9750155 9750685 -25156885 - L2 LINE L2 -338 2976 2417 25 0 0 0 chr21 9751285 9751310 -25156260 + AT_rich Low_complexity Low_complexity 1 25 0 37 62 0 0 chr21 9751412 9751477 -25156093 + AT_rich Low_complexity Low_complexity 1 65 0 5729 194 64 58 chr21 9751697 9753140 -25154430 + L1MCa LINE L1 7 1459 -4967 330 198 11 28 chr21 9753144 9753326 -25154244 + (TA)n Simple_repeat Simple_repeat 2 180 0 181 181 0 28 chr21 9753388 9753460 -25154110 + (TA)n Simple_repeat Simple_repeat 2 71 0 777 179 17 105 chr21 9753490 9753765 -25153805 + L1MCa LINE L1 1480 1820 -4606 1931 139 20 3 chr21 9753765 9754068 -25153502 - AluSg SINE Alu -2 308 1 777 179 17 105 chr21 9754068 9754123 -25153447 + L1MCa LINE L1 1820 1878 -4548 2040 199 9 14 chr21 9754179 9754616 -25152954 - L1 LINE L1 -836 5310 4876 1515 227 76 33 chr21 9754617 9755183 -25152387 + L1MCa LINE L1 1981 2574 -4033 198 0 0 0 chr21 9755183 9755205 -25152365 + (CA)n Simple_repeat Simple_repeat 1 22 0 1515 227 76 33 chr21 9755205 9755330 -25152240 + L1MCa LINE L1 2574 2692 -3915 549 290 42 14 chr21 9755374 9755588 -25151982 + L1MCa LINE L1 2668 2887 -3539 593 130 0 0 chr21 9755592 9755684 -25151886 + AluSp/q SINE Alu 201 292 -21 3867 263 28 15 chr21 9755818 9756116 -25151454 + L1MCa LINE L1 2926 4240 -2186 6885 230 38 19 chr21 9756116 9758258 -25149312 + L1MC1 LINE L1 2948 5178 -1155 1887 84 0 4 chr21 9758258 9758496 -25149074 - AluSg SINE Alu -14 296 60 6885 230 38 19 chr21 9758496 9759668 -25147902 + L1MC1 LINE L1 5178 6326 -7 25 0 0 0 chr21 9760987 9761012 -25146558 + AT_rich Low_complexity Low_complexity 1 25 0 47 19 0 0 chr21 9761174 9761228 -25146342 + AT_rich Low_complexity Low_complexity 1 54 0 820 159 0 16 chr21 9761228 9761538 -25146032 + (TTTAA)n Simple_repeat Simple_repeat 1 304 0 257 229 14 14 chr21 9761796 9761866 -25145704 - L1MC/D LINE L1 -1959 5849 5780 1742 48 4 57 chr21 9762904 9763152 -25144418 + AluY SINE Alu 62 296 -15 395 229 9 9 chr21 9763261 9763370 -25144200 + L1ME LINE L1 5711 5819 -302 28 29 0 0 chr21 9763525 9763560 -25144010 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr21 9763639 9763665 -25143905 + AT_rich Low_complexity Low_complexity 1 26 0 321 314 85 20 chr21 9763939 9764092 -25143478 - MER104 DNA MER2_type -387 1508 1346 1155 247 70 38 chr21 9764354 9764771 -25142799 - L1MC2 LINE L1 -251 6093 5664 35 63 0 0 chr21 9765240 9765303 -25142267 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr21 9765877 9765898 -25141672 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr21 9766525 9766573 -25140997 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr21 9767423 9767451 -25140119 + AT_rich Low_complexity Low_complexity 1 28 0 2153 102 10 0 chr21 9767530 9767834 -25139736 - AluSp SINE Alu -6 307 1 189 0 0 0 chr21 9768221 9768242 -25139328 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 659 110 11 0 chr21 9768258 9768349 -25139221 - AluSx SINE Alu -27 282 191 996 121 0 0 chr21 9768350 9768491 -25139079 - AluSx SINE Alu -172 141 1 28 48 0 0 chr21 9768776 9768818 -25138752 + AT_rich Low_complexity Low_complexity 1 42 0 246 62 0 0 chr21 9769269 9769301 -25138269 + (TTG)n Simple_repeat Simple_repeat 2 33 0 26 64 0 0 chr21 9769935 9769982 -25137588 + AT_rich Low_complexity Low_complexity 1 47 0 233 106 0 43 chr21 9771030 9771077 -25136493 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 363 96 0 0 chr21 9771399 9771451 -25136119 + (TA)n Simple_repeat Simple_repeat 2 53 0 21 36 0 0 chr21 9772060 9772088 -25135482 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 9772149 9772178 -25135392 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr21 9772232 9772279 -25135291 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr21 9772748 9772769 -25134801 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr21 9773463 9773498 -25134072 + AT_rich Low_complexity Low_complexity 1 35 0 670 247 50 11 chr21 9774693 9774875 -25132695 + MER5A DNA MER1_type 1 189 0 30 0 0 0 chr21 9775707 9775737 -25131833 + AT_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr21 9775879 9775942 -25131628 + AT_rich Low_complexity Low_complexity 1 63 0 321 368 20 49 chr21 9776601 9776848 -25130722 + MIR SINE MIR 19 258 -4 314 274 71 0 chr21 9777938 9778022 -25129548 + L1MC4 LINE L1 6613 6702 -1340 261 360 49 5 chr21 9778444 9778647 -25128923 - MLT1D-int LTR MaLR -870 501 290 1435 217 106 56 chr21 9778778 9779167 -25128403 - MLT1D LTR MaLR 0 505 86 198 0 0 0 chr21 9779176 9779198 -25128372 + (TGG)n Simple_repeat Simple_repeat 1 22 0 1903 166 0 3 chr21 9779198 9779501 -25128069 - AluSx SINE Alu -8 304 1 1435 217 106 56 chr21 9779501 9779591 -25127979 - MLT1D LTR MaLR -419 86 2 5625 229 21 2 chr21 9779776 9780922 -25126648 - ERVL LTR ERVL -2366 3398 2231 1723 259 22 14 chr21 9780896 9781458 -25126112 - ERVL LTR ERVL -5089 586 2 23 54 0 0 chr21 9781609 9781646 -25125924 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr21 9781771 9781795 -25125775 + AT_rich Low_complexity Low_complexity 1 24 0 1069 293 17 10 chr21 9782259 9782662 -25124908 - L1M4 LINE L1 -3413 2733 2328 701 268 34 48 chr21 9782677 9782787 -25124783 + L1ME1 LINE L1 5812 5922 -244 338 42 21 0 chr21 9782787 9782835 -25124735 + (CA)n Simple_repeat Simple_repeat 2 50 0 701 268 34 48 chr21 9782835 9783079 -25124491 + L1ME1 LINE L1 5922 6161 -5 1604 195 129 8 chr21 9783623 9784003 -25123567 + MSTB LTR MaLR 1 426 0 1481 188 16 2 chr21 9784188 9784618 -25122952 - L1PA16 LINE L1 -3 6866 6402 1772 209 52 11 chr21 9784687 9785055 -25122515 + MSTB LTR MaLR 1 383 -43 324 155 56 0 chr21 9785079 9785150 -25122420 + MSTB LTR MaLR 352 426 0 13248 239 19 25 chr21 9785153 9788028 -25119542 - L1PA16 LINE L1 -500 6368 3516 2006 147 0 3 chr21 9788028 9788328 -25119242 - AluSg1 SINE Alu -10 299 1 13248 239 19 25 chr21 9788328 9790159 -25117411 - L1PA16 LINE L1 -3352 3516 1676 2021 149 6 12 chr21 9790221 9790549 -25117021 + THE1B LTR MaLR 1 326 -38 229 0 185 0 chr21 9790552 9790633 -25116937 + (TTAA)n Simple_repeat Simple_repeat 2 97 0 23 68 0 0 chr21 9790634 9790678 -25116892 + AT_rich Low_complexity Low_complexity 1 44 0 246 86 29 0 chr21 9790678 9790713 -25116857 + THE1B LTR MaLR 340 375 0 1810 173 16 0 chr21 9791657 9791964 -25115606 - AluSx SINE Alu 0 312 1 1104 238 64 51 chr21 9792129 9792520 -25115050 + LTR47B LTR ERVL 11 406 -37 26 0 0 0 chr21 9792647 9792673 -25114897 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr21 9792866 9792890 -25114680 + AT_rich Low_complexity Low_complexity 1 24 0 1920 141 3 0 chr21 9792893 9793215 -25114355 + AluSx SINE Alu 1 323 0 970 249 47 30 chr21 9793371 9793800 -25113770 - L1MDb LINE L1 -5079 1330 895 2235 110 48 20 chr21 9793838 9794192 -25113378 - THE1B LTR MaLR 0 364 1 9235 109 36 81 chr21 9794192 9795845 -25111725 - THE1B-int LTR MaLR 0 1580 1 1927 149 19 27 chr21 9795845 9796221 -25111349 - THE1C LTR MaLR 0 375 3 1416 230 3 0 chr21 9796388 9796671 -25110899 + AluJb SINE Alu 1 284 -28 23 33 0 0 chr21 9796672 9796702 -25110868 + AT_rich Low_complexity Low_complexity 1 30 0 1489 227 44 10 chr21 9797253 9797636 -25109934 + MSTD LTR MaLR 1 396 0 605 206 15 0 chr21 9799415 9799546 -25108024 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr21 9800000 9800028 -25107542 + AT_rich Low_complexity Low_complexity 1 28 0 1072 132 89 0 chr21 9800375 9800565 -25107005 - L1MA2 LINE L1 0 6304 6098 557 108 0 0 chr21 9800566 9800649 -25106921 + L1MA1 LINE L1 5879 5961 -341 469 270 22 65 chr21 9800681 9800866 -25106704 + L1MDb LINE L1 5 181 -6228 218 116 23 0 chr21 9800892 9800935 -25106635 + (CA)n Simple_repeat Simple_repeat 1 44 0 777 184 64 86 chr21 9801254 9801336 -25106234 + L1MDb LINE L1 697 779 -5630 1395 216 70 6 chr21 9801336 9801679 -25105891 + MLT1A1 LTR MaLR 1 365 0 777 184 64 86 chr21 9801679 9801829 -25105741 + L1MDb LINE L1 779 924 -5485 1148 263 49 11 chr21 9801829 9802256 -25105314 - LTR68 LTR ERV1 0 740 233 2045 123 51 21 chr21 9802409 9802743 -25104827 + THE1B LTR MaLR 1 344 -20 4475 84 2 0 chr21 9802749 9803347 -25104223 + THE1B-int LTR MaLR 2 600 -980 1839 129 38 7 chr21 9803380 9803667 -25103903 - AluSx SINE Alu -16 296 1 1932 137 3 38 chr21 9804648 9804963 -25102607 - AluSx SINE Alu -8 304 1 379 271 99 26 chr21 9805057 9805208 -25102362 + MER97c DNA MER1_type? 15 176 -914 773 236 50 0 chr21 9806265 9806464 -25101106 + MER3 DNA MER1_type 1 209 0 1809 165 62 15 chr21 9806688 9807027 -25100543 - MLT1A1 LTR MaLR 0 365 11 288 267 38 19 chr21 9807105 9807210 -25100360 - MLT1I LTR MaLR -203 206 100 306 374 24 24 chr21 9807289 9807495 -25100075 + MIR SINE MIR 57 262 0 1621 150 14 35 chr21 9807775 9808061 -25099509 + AluY SINE Alu 1 280 -31 460 56 28 0 chr21 9808062 9808134 -25099436 + (TC)n Simple_repeat Simple_repeat 1 74 0 1558 184 9 44 chr21 9808195 9808510 -25099060 + AluJo SINE Alu 5 308 -4 270 0 0 0 chr21 9809166 9809196 -25098374 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 73 0 15 chr21 9810554 9810601 -25096969 + AT_rich Low_complexity Low_complexity 1 48 -19 2222 95 0 3 chr21 9810601 9810896 -25096674 - AluSx SINE Alu -18 294 1 22 73 0 15 chr21 9810896 9810916 -25096654 + AT_rich Low_complexity Low_complexity 48 67 0 1467 212 0 3 chr21 9811035 9811327 -25096243 + AluJo SINE Alu 1 291 -21 8818 181 15 15 chr21 9811983 9814073 -25093497 + Tigger1 DNA MER2_type 273 2414 -4 1566 135 135 32 chr21 9814073 9814413 -25093157 + THE1C LTR MaLR 1 375 0 9362 135 31 19 chr21 9814414 9815974 -25091596 + THE1C-int LTR MaLR 2 1580 0 1809 147 57 38 chr21 9815974 9816342 -25091228 + THE1C LTR MaLR 1 375 0 268 314 67 54 chr21 9817128 9817351 -25090219 + L2 LINE L2 2621 2846 -468 22 0 0 0 chr21 9817711 9817733 -25089837 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr21 9818416 9818454 -25089116 + AT_rich Low_complexity Low_complexity 1 38 0 184 250 94 0 chr21 9818555 9818619 -25088951 - MIR SINE MIR -13 249 180 547 322 25 15 chr21 9818624 9818823 -25088747 - MIR SINE MIR -56 206 6 570 330 70 7 chr21 9819275 9819560 -25088010 + L1MC4 LINE L1 6703 7005 -1037 986 311 65 19 chr21 9819962 9820332 -25087238 + L1MB8 LINE L1 18 404 -6455 1866 248 48 16 chr21 9820469 9820954 -25086616 + L1MB8 LINE L1 4872 5340 -1617 1869 201 32 3 chr21 9820954 9821333 -25086237 + MLT1B LTR MaLR 1 390 0 1866 248 48 16 chr21 9821333 9821699 -25085871 + L1MB8 LINE L1 5340 5844 -1113 1356 64 0 0 chr21 9821699 9821872 -25085698 - L1PA4 LINE L1 -7 6148 5976 1666 40 0 0 chr21 9821872 9822071 -25085499 + L1PA4 LINE L1 5749 5947 -208 3833 221 34 10 chr21 9822091 9823201 -25084369 + L1MB8 LINE L1 5844 6982 -7 2081 152 11 24 chr21 9824115 9824484 -25083086 - THE1B LTR MaLR 0 364 1 11039 108 10 1 chr21 9824484 9826049 -25081521 - THE1B-int LTR MaLR 0 1580 1 1650 184 66 20 chr21 9826049 9826397 -25081173 - THE1B LTR MaLR 0 364 1 897 296 50 9 chr21 9826463 9826796 -25080774 + MLT1F1 LTR MaLR 186 564 -3 1234 245 19 7 chr21 9827415 9827836 -25079734 - L1 LINE L1 -2681 3465 3040 4059 250 12 11 chr21 9827945 9828665 -25078905 - L1PA15-16 LINE L1 -3561 3288 2561 1787 191 0 7 chr21 9828665 9828969 -25078601 - AluSx SINE Alu -8 304 3 4059 250 12 11 chr21 9828969 9829591 -25077979 - L1PA15-16 LINE L1 -4288 2561 1941 3204 221 17 6 chr21 9829643 9830366 -25077204 + L1P LINE L1 3463 4193 -1953 400 326 44 0 chr21 9830366 9830501 -25077069 + L1M4 LINE L1 4208 4348 -1798 558 68 14 0 chr21 9832579 9832653 -25074917 + MADE1 DNA Mariner 2 76 -4 21 0 0 0 chr21 9832930 9832951 -25074619 + AT_rich Low_complexity Low_complexity 1 21 0 349 265 106 66 chr21 9833305 9833456 -25074114 - L2 LINE L2 0 3272 3116 1765 107 55 48 chr21 9834068 9834357 -25073213 + AluSx SINE Alu 1 291 -21 1500 169 67 44 chr21 9834441 9834785 -25072785 + L1MB3 LINE L1 5832 6183 0 260 331 49 7 chr21 9835701 9835843 -25071727 + LTR67 LTR ERVL 408 555 -2 231 36 0 0 chr21 9835858 9835886 -25071684 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 243 362 29 19 chr21 9836187 9836292 -25071278 + MER5A DNA MER1_type 1 106 -83 1043 134 16 16 chr21 9837893 9838079 -25069491 - MER46B DNA MER2_type 0 236 51 327 147 59 0 chr21 9838083 9838185 -25069385 + (TA)n Simple_repeat Simple_repeat 1 108 0 2061 113 0 3 chr21 9838189 9838472 -25069098 - AluSx SINE Alu -30 282 1 1138 145 0 6 chr21 9838472 9838651 -25068919 - MER46B DNA MER2_type -180 56 4 227 253 126 21 chr21 9839069 9839164 -25068406 + L1ME LINE L1 5756 5860 -310 1166 217 19 4 chr21 9839303 9839566 -25068004 + LTR48B LTR ERV1 1 267 -377 807 209 64 18 chr21 9839588 9839808 -25067762 + LTR48B LTR ERV1 384 613 -31 762 275 78 73 chr21 9840096 9840795 -25066775 + L2 LINE L2 2565 3313 0 535 223 14 68 chr21 9840900 9841048 -25066522 - MER7C DNA MER2_type 0 602 463 2424 205 13 25 chr21 9841065 9841587 -25065983 - MER7C DNA MER2_type -83 519 4 2178 206 17 7 chr21 9842473 9842895 -25064675 + MSTB LTR MaLR 1 426 0 189 296 37 37 chr21 9845006 9845087 -25062483 - MER5B DNA MER1_type -62 116 36 920 208 10 10 chr21 9845418 9845615 -25061955 - L1MB5 LINE L1 -9 6165 5969 818 272 0 16 chr21 9846479 9846663 -25060907 + Tigger7 DNA MER2_type 3 183 -2304 759 258 70 8 chr21 9846802 9847046 -25060524 - MER46C DNA MER2_type 0 338 80 22 0 0 0 chr21 9849144 9849166 -25058404 + AT_rich Low_complexity Low_complexity 1 22 0 523 238 50 27 chr21 9849620 9849897 -25057673 - LTR37A LTR ERV1 0 426 195 1705 187 0 0 chr21 9850660 9850944 -25056626 - AluJo SINE Alu -28 284 1 2202 204 24 4 chr21 9853124 9853615 -25053955 - L1MB4 LINE L1 0 6180 5680 309 372 7 20 chr21 9853671 9853824 -25053746 - L1M4 LINE L1 -6382 160 10 22 70 0 0 chr21 9854656 9854699 -25052871 + AT_rich Low_complexity Low_complexity 1 43 0 1925 118 32 0 chr21 9859227 9859548 -25048022 - AluSx SINE Alu 0 332 3 378 208 13 0 chr21 9859777 9859854 -25047716 + MER67D LTR ERV1 432 509 -5 303 235 0 74 chr21 9861163 9861244 -25046326 + MIR SINE MIR 28 102 -160 4766 163 0 15 chr21 9861255 9862067 -25045503 + L1MC1 LINE L1 5514 6313 -20 380 296 23 15 chr21 9862086 9862218 -25045352 + MIR SINE MIR 97 229 -33 243 284 15 0 chr21 9862850 9862917 -25044653 - Charlie1 DNA MER1_type -2687 74 7 5488 224 31 1 chr21 9864730 9865888 -25041682 - THE1C-int LTR MaLR -439 1212 20 1926 158 27 29 chr21 9865894 9866268 -25041302 - THE1C LTR MaLR 0 375 3 311 222 42 0 chr21 9867085 9867157 -25040413 + Tigger2 DNA MER2_type 1 75 -2643 2113 188 16 18 chr21 9867154 9867591 -25039979 + Tigger2 DNA MER2_type 2283 2718 0 26 50 0 0 chr21 9867775 9867815 -25039755 + AT_rich Low_complexity Low_complexity 1 40 0 1990 124 7 0 chr21 9867816 9868098 -25039472 - AluSp SINE Alu -29 284 1 7590 176 25 33 chr21 9868103 9870489 -25037081 - L1MA5A LINE L1 0 6297 3942 1880 128 3 28 chr21 9870489 9870778 -25036792 + AluSx SINE Alu 1 282 -30 7590 176 25 33 chr21 9870778 9871232 -25036338 - L1MA5A LINE L1 -2355 3942 3486 21 36 0 0 chr21 9871240 9871268 -25036302 + AT_rich Low_complexity Low_complexity 1 28 0 2123 252 56 7 chr21 9872218 9872789 -25034781 - MER82 DNA MER2_type -54 599 1 1668 175 3 10 chr21 9872860 9873157 -25034413 - AluJb SINE Alu -15 297 3 258 279 15 0 chr21 9874325 9874393 -25033177 + (TATG)n Simple_repeat Simple_repeat 3 71 0 2358 136 3 0 chr21 9874753 9875107 -25032463 + THE1A LTR MaLR 1 355 0 11090 110 4 1 chr21 9875107 9876682 -25030888 + THE1A-int LTR MaLR 1 1580 0 2509 102 3 0 chr21 9876682 9877025 -25030545 + THE1A LTR MaLR 1 344 -11 531 350 129 29 chr21 9877252 9877880 -25029690 + L2 LINE L2 1990 2680 -634 21 57 0 0 chr21 9879022 9879057 -25028513 + AT_rich Low_complexity Low_complexity 1 35 0 1729 221 83 66 chr21 9879446 9879949 -25027621 - MLT2B1 LTR ERVL -6 514 3 274 292 0 0 chr21 9880016 9880081 -25027489 + MIR SINE MIR 11 75 -187 683 266 45 10 chr21 9880480 9880769 -25026801 - Charlie2 DNA MER1_type -69 2793 2495 21 57 0 0 chr21 9880769 9880804 -25026766 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr21 9880960 9880990 -25026580 + AT_rich Low_complexity Low_complexity 1 30 0 2005 176 34 14 chr21 9881041 9881398 -25026172 + THE1B LTR MaLR 1 364 0 10609 111 26 1 chr21 9881398 9882939 -25024631 + THE1B-int LTR MaLR 1 1580 0 1918 174 54 14 chr21 9882939 9883289 -25024281 + THE1B LTR MaLR 1 364 0 2326 75 0 13 chr21 9883731 9884036 -25023534 + AluY SINE Alu 1 301 -10 1266 263 78 16 chr21 9886129 9886502 -25021068 - MSTD LTR MaLR 0 396 1 3442 39 0 0 chr21 9888324 9888735 -25018835 - L1PA5 LINE L1 -432 5722 5312 3429 43 7 14 chr21 9888738 9889177 -25018393 + L1PA5 LINE L1 5714 6149 -5 29 28 0 0 chr21 9889842 9889878 -25017692 + AT_rich Low_complexity Low_complexity 1 36 0 3131 105 13 0 chr21 9890083 9890530 -25017040 - MLT2A2 LTR ERVL 0 453 1 2079 194 28 21 chr21 9891068 9891491 -25016079 + Tigger2a DNA MER2_type 8 433 -1 2981 20 0 0 chr21 9891638 9891984 -25015586 - L1PA2 LINE L1 -2 6153 5808 4379 20 0 0 chr21 9891984 9892490 -25015080 + L1P LINE L1 3935 4440 -1706 265 354 28 50 chr21 9894729 9895275 -25012295 + HAL1 LINE L1 1101 1634 -873 200 384 51 14 chr21 9896091 9896229 -25011341 - MIR SINE MIR -117 145 3 23 78 0 0 chr21 9896935 9896986 -25010584 + AT_rich Low_complexity Low_complexity 1 51 0 2428 180 27 14 chr21 9898313 9898796 -25008774 + L1PA16 LINE L1 5676 6164 -2 2273 123 37 0 chr21 9899684 9900034 -25007536 - THE1B LTR MaLR 0 364 2 7835 130 3 0 chr21 9900035 9901185 -25006385 - THE1B-int LTR MaLR 0 1580 427 1573 259 83 49 chr21 9902126 9902682 -25004888 - MLT1E LTR MaLR -1 592 18 2063 151 0 0 chr21 9904300 9904612 -25002958 + AluSq SINE Alu 1 312 -1 1406 244 32 44 chr21 9905154 9905564 -25002006 - MLT1E2 LTR MaLR 0 626 222 237 209 108 62 chr21 9905574 9905703 -25001867 - MLT1E1 LTR MaLR -380 246 112 257 196 0 22 chr21 9905775 9905821 -25001749 - MLT1E1 LTR MaLR -605 49 5 684 270 78 61 chr21 9906009 9906035 -25001535 + L1MCb LINE L1 1 25 -6020 1608 235 82 9 chr21 9906035 9906499 -25001071 - MLT1D LTR MaLR -3 502 5 684 270 78 61 chr21 9906499 9906765 -25000805 + L1MCb LINE L1 25 298 -5747 596 227 131 23 chr21 9907028 9907255 -25000315 - LOR1a LTR ERV1 -38 459 192 263 197 91 0 chr21 9907252 9907318 -25000252 - LOR1a LTR ERV1 -189 308 237 2064 124 0 0 chr21 9907323 9907614 -24999956 - AluSx SINE Alu -17 295 5 1370 264 48 14 chr21 9907859 9908714 -24998856 + L1MCb LINE L1 653 1540 -4851 25 83 0 0 chr21 9908720 9908780 -24998790 + AT_rich Low_complexity Low_complexity 1 60 0 2794 138 0 56 chr21 9908818 9909319 -24998251 - L1PA15 LINE L1 -3 6813 6341 14652 233 19 13 chr21 9909389 9910089 -24997481 - L1PA15 LINE L1 -484 6332 5638 183 42 0 0 chr21 9910089 9910113 -24997457 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 14652 233 19 13 chr21 9910113 9914347 -24993223 - L1PA15 LINE L1 -1178 5638 1357 183 338 14 0 chr21 9915015 9915089 -24992481 + L2 LINE L2 2244 2318 -996 191 275 72 29 chr21 9916107 9916176 -24991394 - L2 LINE L2 0 3313 3242 181 351 75 0 chr21 9916236 9916330 -24991240 + L2 LINE L2 1247 1347 -1967 1907 169 36 28 chr21 9917308 9917669 -24989901 - THE1B LTR MaLR 0 364 1 445 268 20 39 chr21 9917958 9918111 -24989459 - MLT1G LTR MaLR 0 590 441 266 176 0 0 chr21 9918168 9918219 -24989351 - L1MA9 LINE L1 -38 6274 6224 25 0 0 0 chr21 9918654 9918679 -24988891 + AT_rich Low_complexity Low_complexity 1 25 0 1200 291 127 57 chr21 9919420 9920333 -24987237 - L2 LINE L2 -1 3312 2301 26 50 0 0 chr21 9921159 9921199 -24986371 + AT_rich Low_complexity Low_complexity 1 40 0 919 158 0 19 chr21 9923728 9923886 -24983684 - AluSg/x SINE Alu -17 292 138 1071 308 72 31 chr21 9924586 9925140 -24982430 + MLT1E LTR MaLR 6 593 0 21 0 0 0 chr21 9925738 9925759 -24981811 + AT_rich Low_complexity Low_complexity 1 21 0 1781 186 66 24 chr21 9926928 9927305 -24980265 + MER57A LTR ERV1 11 403 0 2183 94 0 19 chr21 9927431 9927740 -24979830 - AluSc SINE Alu -6 303 1 2598 51 0 0 chr21 9928021 9928332 -24979238 + AluY SINE Alu 1 311 0 312 325 31 6 chr21 9928543 9928706 -24978864 - MER110A LTR ERV1 -13 455 289 2207 122 3 0 chr21 9929344 9929655 -24977915 - AluSp SINE Alu -1 312 1 187 229 62 0 chr21 9929905 9929953 -24977617 - L2 LINE L2 0 3313 3263 556 70 105 0 chr21 9931390 9931476 -24976094 - L1PA8 LINE L1 -14 6158 6064 1771 196 54 48 chr21 9931938 9932401 -24975169 + MER31B LTR ERV1 1 466 0 192 77 0 0 chr21 9932541 9932567 -24975003 + (T)n Simple_repeat Simple_repeat 1 26 0 237 289 70 55 chr21 9932606 9932734 -24974836 + MIR SINE MIR 35 164 -98 247 212 28 56 chr21 9933648 9933827 -24973743 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 333 179 9 36 chr21 9933778 9933890 -24973680 + (TA)n Simple_repeat Simple_repeat 1 109 0 2346 90 0 3 chr21 9936054 9936364 -24971206 - AluSc SINE Alu 0 309 1 363 82 0 0 chr21 9937021 9937070 -24970500 - Alu SINE Alu -4 296 248 354 289 75 53 chr21 9937230 9937417 -24970153 + L1MC5 LINE L1 7253 7443 -518 4169 48 8 0 chr21 9937428 9937947 -24969623 - L1PA5 LINE L1 -1551 4595 4073 7391 37 1 1 chr21 9937941 9939536 -24968034 + L1PA5 LINE L1 4562 6157 0 5529 43 0 1 chr21 9939537 9940249 -24967321 - L1P LINE L1 -2733 3413 2703 4848 41 3 0 chr21 9940249 9940853 -24966717 + L1PA4 LINE L1 5565 6189 0 738 248 63 71 chr21 9941035 9941386 -24966184 + L1MC5 LINE L1 7601 7948 -13 596 231 52 58 chr21 9941539 9941634 -24965936 + MER33 DNA MER1_type 19 113 -2472 788 147 45 6 chr21 9941634 9941811 -24965759 - L1MA7 LINE L1 -2 6289 6106 596 231 52 58 chr21 9941811 9942023 -24965547 + MER33 DNA MER1_type 113 324 0 307 262 134 29 chr21 9945499 9945671 -24961899 - MLT1G1 LTR MaLR -5 537 348 402 299 42 30 chr21 9945913 9946080 -24961490 - MLT1G1 LTR MaLR -416 179 11 258 331 69 54 chr21 9946131 9946481 -24961089 + L2 LINE L2 1353 1707 -1607 255 357 8 24 chr21 9946637 9946763 -24960807 + L2 LINE L2 1881 2004 -1310 21 0 0 0 chr21 9947075 9947096 -24960474 + AT_rich Low_complexity Low_complexity 1 21 0 293 135 11 101 chr21 9948357 9948535 -24959035 + (TA)n Simple_repeat Simple_repeat 1 162 0 396 171 59 29 chr21 9948447 9948617 -24958953 + (CTATA)n Simple_repeat Simple_repeat 2 176 0 325 135 21 88 chr21 9948584 9948776 -24958794 + (TA)n Simple_repeat Simple_repeat 2 180 0 350 142 136 25 chr21 9948905 9949067 -24958503 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 228 145 50 44 chr21 9949385 9949544 -24958026 + (CTATA)n Simple_repeat Simple_repeat 2 161 0 218 149 75 30 chr21 9949544 9949611 -24957959 + (TATAG)n Simple_repeat Simple_repeat 3 72 0 246 231 0 0 chr21 9949644 9949709 -24957861 + (TA)n Simple_repeat Simple_repeat 2 66 0 1176 179 64 44 chr21 9950579 9950875 -24956695 + MLT1B LTR MaLR 4 305 -85 621 72 0 0 chr21 9951386 9951469 -24956101 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 1401 215 22 0 chr21 9951469 9951743 -24955827 - AluJb SINE Alu -32 280 1 289 265 53 65 chr21 9953256 9953501 -24954069 + L1ME LINE L1 5588 5829 -292 2150 70 0 18 chr21 9953541 9953880 -24953690 - AluY SINE Alu 0 334 1 21 0 0 0 chr21 9953933 9953954 -24953616 + AT_rich Low_complexity Low_complexity 1 21 0 1010 275 95 67 chr21 9953972 9954423 -24953147 + MLT2B1 LTR ERVL 1 464 0 21 57 0 0 chr21 9955220 9955255 -24952315 + AT_rich Low_complexity Low_complexity 1 35 0 189 171 0 0 chr21 9955783 9955818 -24951752 + CT-rich Low_complexity Low_complexity 2 36 0 2229 104 0 3 chr21 9956496 9956803 -24950767 - AluSc SINE Alu -1 308 3 914 176 39 0 chr21 9957042 9957195 -24950375 + Tigger7 DNA MER2_type 1 159 -2328 1580 142 0 35 chr21 9957210 9957498 -24950072 + Tigger7 DNA MER2_type 2210 2487 0 24 53 0 0 chr21 9957961 9957999 -24949571 + AT_rich Low_complexity Low_complexity 1 38 0 327 178 14 14 chr21 9958404 9958477 -24949093 - L1PA15 LINE L1 -20 6145 6073 237 252 57 82 chr21 9959571 9959730 -24947840 + LTR33A LTR ERVL 362 516 -7 235 269 85 23 chr21 9959752 9959882 -24947688 + LTR16C LTR ERVL 352 489 -2 180 0 0 0 chr21 9960135 9960155 -24947415 + (TA)n Simple_repeat Simple_repeat 1 20 0 2067 73 33 4 chr21 9960159 9960475 -24947095 - AluY SINE Alu 0 324 1 25 31 0 0 chr21 9960699 9960731 -24946839 + AT_rich Low_complexity Low_complexity 1 32 0 450 308 111 32 chr21 9962693 9963130 -24944440 - L2 LINE L2 -137 3176 2717 192 152 0 0 chr21 9963579 9963612 -24943958 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 555 269 69 49 chr21 9963618 9963923 -24943647 - MER46C DNA MER2_type -18 320 10 260 234 16 0 chr21 9964020 9964084 -24943486 + LTR53 LTR ERVL 1 65 -454 570 202 9 0 chr21 9965133 9965242 -24942328 + L1MA6 LINE L1 5688 5797 -494 2303 149 64 2 chr21 9965245 9965669 -24941901 + L1MA6 LINE L1 5844 6293 -7 710 225 114 92 chr21 9968038 9968240 -24939330 - MLT1B LTR MaLR 0 390 194 249 57 0 0 chr21 9968240 9968275 -24939295 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 710 225 114 92 chr21 9968275 9968335 -24939235 - MLT1B LTR MaLR -196 194 137 2208 137 20 6 chr21 9968335 9968692 -24938878 - THE1B LTR MaLR 0 364 3 710 225 114 92 chr21 9968692 9968788 -24938782 - MLT1B LTR MaLR -253 137 23 1044 208 10 0 chr21 9969203 9969400 -24938170 - MLT1B LTR MaLR 0 390 192 4049 177 22 15 chr21 9969427 9970228 -24937342 + L1MC1 LINE L1 5527 6333 0 365 289 111 0 chr21 9971485 9971620 -24935950 - L2 LINE L2 -998 2316 2167 252 0 0 0 chr21 9971787 9971815 -24935755 + (T)n Simple_repeat Simple_repeat 1 28 0 874 331 20 3 chr21 9971826 9972170 -24935400 + LTR16A LTR ERVL 96 445 -5 450 343 52 16 chr21 9972161 9972409 -24935161 - MLT1J LTR MaLR -184 327 71 2340 59 0 56 chr21 9973576 9973900 -24933670 - AluY SINE Alu -5 306 1 1368 219 81 55 chr21 9974375 9974867 -24932703 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr21 9975456 9975478 -24932092 + AT_rich Low_complexity Low_complexity 1 22 0 2391 111 14 3 chr21 9975976 9976326 -24931244 + THE1A LTR MaLR 1 354 -1 10524 98 20 39 chr21 9976327 9977937 -24929633 + THE1A-int LTR MaLR 1 1580 0 2563 75 8 30 chr21 9977939 9978240 -24929330 + THE1A LTR MaLR 3 297 -58 1670 109 26 89 chr21 9978240 9978376 -24929194 + AluSx SINE Alu 1 144 -172 2105 92 4 4 chr21 9978376 9978688 -24928882 + AluSg SINE Alu 1 312 0 1670 109 26 89 chr21 9978688 9978885 -24928685 + AluSx SINE Alu 144 316 0 2563 75 8 30 chr21 9978885 9978943 -24928627 + THE1A LTR MaLR 297 355 0 22 70 0 0 chr21 9979158 9979201 -24928369 + AT_rich Low_complexity Low_complexity 1 43 0 2226 95 0 7 chr21 9979373 9979678 -24927892 - AluY SINE Alu -8 303 1 334 259 9 37 chr21 9980638 9980746 -24926824 + CT-rich Low_complexity Low_complexity 4 108 0 22 56 0 0 chr21 9980749 9980785 -24926785 + AT_rich Low_complexity Low_complexity 1 36 0 271 265 0 15 chr21 9982340 9982408 -24925162 + (TAG)n Simple_repeat Simple_repeat 1 67 0 512 291 63 0 chr21 9982458 9982633 -24924937 - MIR SINE MIR -21 241 56 673 259 27 5 chr21 9982732 9982917 -24924653 - MER5A DNA MER1_type 0 189 1 329 247 62 10 chr21 9983781 9983878 -24923692 + MER5B DNA MER1_type 1 102 -76 21 36 0 0 chr21 9984551 9984579 -24922991 + AT_rich Low_complexity Low_complexity 1 28 0 766 209 40 22 chr21 9984850 9985075 -24922495 + Charlie5 DNA MER1_type 2356 2584 -28 1182 239 0 12 chr21 9986069 9986324 -24921246 - MLT1D LTR MaLR 0 505 254 261 128 0 0 chr21 9986387 9986434 -24921136 + (TG)n Simple_repeat Simple_repeat 1 47 0 279 252 43 70 chr21 9986447 9986562 -24921008 - MLT1D LTR MaLR -367 138 27 1727 139 15 7 chr21 9986849 9987162 -24920408 - AluY SINE Alu 0 321 7 1721 229 25 10 chr21 9987417 9987823 -24919747 - MLT2C2 LTR ERVL -52 412 1 481 216 36 149 chr21 9988512 9988734 -24918836 - MLT1A1 LTR MaLR -2 363 167 201 74 0 0 chr21 9988796 9988823 -24918747 + (A)n Simple_repeat Simple_repeat 1 27 0 850 190 32 6 chr21 9988830 9988988 -24918582 - MLT1A1 LTR MaLR -203 162 1 1120 287 73 61 chr21 9989382 9989877 -24917693 - MLT1E LTR MaLR 0 593 93 447 225 5 118 chr21 9989856 9990043 -24917527 - MLT1E LTR MaLR -427 166 1 625 297 76 60 chr21 9992959 9993339 -24914231 + MLT1G1 LTR MaLR 200 585 -10 22 0 0 0 chr21 9993378 9993400 -24914170 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr21 9993616 9993660 -24913910 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 216 86 0 0 chr21 9993818 9993853 -24913717 + (CCCTAA)n Simple_repeat Simple_repeat 5 39 0 21 57 0 0 chr21 9995241 9995276 -24912294 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 9995890 9995918 -24911652 + AT_rich Low_complexity Low_complexity 1 28 0 1258 41 35 12 chr21 9996503 9996673 -24910897 + L1PA4 LINE L1 5982 6155 0 543 305 76 64 chr21 9998739 9999159 -24908411 - MLT1J2 LTR MaLR -21 429 5 1245 253 50 71 chr21 9999725 10000049 -24907521 + MER67D LTR ERV1 1 311 -203 1572 174 35 0 chr21 10000049 10000336 -24907234 + L1PA16 LINE L1 5861 6157 -9 1245 253 50 71 chr21 10000336 10000532 -24907038 + MER67D LTR ERV1 311 510 -4 21 36 0 0 chr21 10002363 10002391 -24905179 + AT_rich Low_complexity Low_complexity 1 28 0 1342 271 78 0 chr21 10003200 10003595 -24903975 - MER97c DNA MER1_type? -635 455 30 1303 42 42 0 chr21 10004286 10004454 -24903116 - L1PA4 LINE L1 0 6155 5981 1574 21 0 0 chr21 10004454 10004640 -24902930 + L1PA4 LINE L1 5794 5979 -176 23 68 0 0 chr21 10005102 10005146 -24902424 + AT_rich Low_complexity Low_complexity 1 44 0 195 129 0 0 chr21 10005238 10005269 -24902301 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 510 91 13 0 chr21 10005753 10005830 -24901740 - MADE1 DNA Mariner -2 78 1 414 0 0 0 chr21 10005948 10005994 -24901576 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 226 140 40 0 chr21 10006004 10006054 -24901516 - L1MC4 LINE L1 -1339 6703 6652 198 191 0 0 chr21 10006393 10006435 -24901135 + (TA)n Simple_repeat Simple_repeat 2 43 0 3279 158 13 48 chr21 10007206 10007729 -24899841 - L1MA2 LINE L1 -9 7714 7218 1838 149 7 7 chr21 10007729 10008037 -24899533 - AluSx SINE Alu -1 311 4 3279 158 13 48 chr21 10008037 10008186 -24899384 - L1MA2 LINE L1 -505 7218 7065 1714 137 14 31 chr21 10008204 10008497 -24899073 - THE1B LTR MaLR -76 288 1 10844 101 31 1 chr21 10008497 10010032 -24897538 - THE1B-int LTR MaLR 0 1580 1 2389 94 33 25 chr21 10010032 10010393 -24897177 - THE1B LTR MaLR 0 364 1 13531 183 40 17 chr21 10010393 10011207 -24896363 - L1MA2 LINE L1 -652 7069 6275 381 22 0 0 chr21 10011207 10011253 -24896317 + (TG)n Simple_repeat Simple_repeat 2 47 0 13531 183 40 17 chr21 10011253 10012532 -24895038 - L1MA2 LINE L1 -1446 6275 5027 1960 144 3 10 chr21 10012532 10012837 -24894733 - AluSx SINE Alu -9 303 1 13531 183 40 17 chr21 10012837 10014059 -24893511 - L1MA2 LINE L1 -2694 5027 3675 2031 206 21 11 chr21 10014061 10014494 -24893076 - L1MA2 LINE L1 -5800 1765 1329 2581 210 31 24 chr21 10014461 10015042 -24892528 - L1MA2 LINE L1 -6959 606 22 24 0 0 0 chr21 10015628 10015652 -24891918 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 10016039 10016070 -24891500 + AT_rich Low_complexity Low_complexity 1 31 0 255 303 147 9 chr21 10017121 10017230 -24890340 + L2 LINE L2 3187 3310 -3 1818 182 0 3 chr21 10017718 10018031 -24889539 - AluSx SINE Alu 0 312 1 308 254 0 0 chr21 10018129 10018192 -24889378 - MIR SINE MIR -116 146 84 24 0 0 0 chr21 10018571 10018595 -24888975 + AT_rich Low_complexity Low_complexity 1 24 0 287 406 0 0 chr21 10020373 10020506 -24887064 - MER5A DNA MER1_type -56 133 1 1812 91 0 0 chr21 10021000 10021231 -24886339 + AluSc SINE Alu 3 233 -76 2239 112 0 0 chr21 10021242 10021538 -24886032 + AluSc SINE Alu 3 298 -11 2280 68 3 0 chr21 10021538 10021831 -24885739 + AluY SINE Alu 1 294 -17 189 0 0 0 chr21 10022115 10022136 -24885434 + (T)n Simple_repeat Simple_repeat 1 21 0 217 62 0 83 chr21 10024161 10024209 -24883361 + (CTAAT)n Simple_repeat Simple_repeat 1 44 0 1362 148 4 8 chr21 10024366 10024616 -24882954 + L1MA5A LINE L1 6045 6293 -4 22 0 0 0 chr21 10024639 10024661 -24882909 + AT_rich Low_complexity Low_complexity 1 22 0 2235 112 3 0 chr21 10024780 10025092 -24882478 - AluSq SINE Alu 0 313 1 568 275 31 13 chr21 10025750 10026020 -24881550 + MLT2F LTR ERVL 10 328 -335 44 56 0 0 chr21 10027222 10027294 -24880276 + AT_rich Low_complexity Low_complexity 1 72 0 1967 82 15 4 chr21 10027654 10027921 -24879649 + AluY SINE Alu 36 305 -6 512 218 98 8 chr21 10028122 10028255 -24879315 + MLT1C LTR MaLR 6 150 -317 207 77 51 26 chr21 10028275 10028314 -24879256 + (AGTAG)n Simple_repeat Simple_repeat 4 43 0 328 298 0 0 chr21 10028532 10028636 -24878934 + MLT1D LTR MaLR 402 505 0 986 263 62 66 chr21 10028650 10029213 -24878357 + L1MC4a LINE L1 6058 6618 -1190 31 82 0 0 chr21 10029688 10029761 -24877809 + AT_rich Low_complexity Low_complexity 1 73 0 30 27 0 0 chr21 10030359 10030396 -24877174 + AT_rich Low_complexity Low_complexity 1 37 0 1627 242 60 72 chr21 10030821 10031541 -24876029 + L1ME1 LINE L1 5358 6068 -98 189 74 0 0 chr21 10033144 10033171 -24874399 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr21 10033494 10033516 -24874054 + AT_rich Low_complexity Low_complexity 1 22 0 1761 133 4 0 chr21 10033801 10034049 -24873521 + AluSx SINE Alu 1 249 -63 2166 129 131 8 chr21 10034239 10034620 -24872950 + MSTA LTR MaLR 1 428 0 1420 213 3 36 chr21 10035026 10035327 -24872243 + AluJo SINE Alu 9 299 -13 1902 186 43 24 chr21 10036184 10036445 -24871125 + MLT2A2 LTR ERVL 1 255 -299 1840 161 53 28 chr21 10036445 10036800 -24870770 + THE1B LTR MaLR 1 364 0 1902 186 43 24 chr21 10036800 10037088 -24870482 + MLT2A2 LTR ERVL 255 554 0 2432 52 0 10 chr21 10039912 10040219 -24867351 + AluY SINE Alu 3 306 -5 26 64 0 0 chr21 10040629 10040676 -24866894 + AT_rich Low_complexity Low_complexity 1 47 0 24 67 0 0 chr21 10040936 10040981 -24866589 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr21 10041710 10041749 -24865821 + AT_rich Low_complexity Low_complexity 1 39 0 705 285 136 23 chr21 10041865 10042499 -24865071 - Charlie7 DNA MER1_type -1883 729 2 339 316 70 0 chr21 10043151 10043246 -24864324 - L2 LINE L2 -689 2625 2523 405 342 60 39 chr21 10043246 10043480 -24864090 + MIR SINE MIR 3 241 -21 702 311 96 29 chr21 10043498 10044212 -24863358 - L2 LINE L2 -821 2493 1717 1480 332 57 18 chr21 10044473 10045142 -24862428 - L2 LINE L2 -1970 1344 650 22 35 0 0 chr21 10045637 10045666 -24861904 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 10045898 10045926 -24861644 + AT_rich Low_complexity Low_complexity 1 28 0 431 311 30 6 chr21 10046151 10046318 -24861252 + MIR SINE MIR 92 262 0 617 292 120 22 chr21 10046826 10047100 -24860470 - LTR16C LTR ERVL -9 482 182 261 0 0 0 chr21 10047219 10047248 -24860322 + (TG)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr21 10048741 10048772 -24858798 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr21 10048953 10048984 -24858586 + AT_rich Low_complexity Low_complexity 1 31 0 400 162 27 0 chr21 10049299 10049373 -24858197 - AluJ/FRAM SINE Alu -4 298 223 1851 205 99 83 chr21 10050556 10051194 -24856376 - L1MC3 LINE L1 -8 7777 7130 3667 167 34 3 chr21 10051927 10052656 -24854914 + L1MA8 LINE L1 5537 6288 -3 333 296 93 6 chr21 10052883 10053055 -24854515 - MLT1L LTR MaLR -17 598 412 5128 160 26 1 chr21 10053543 10054726 -24852844 - L1PA16 LINE L1 -77 6089 4885 911 152 7 0 chr21 10054726 10054871 -24852699 + Tigger3(Golem) DNA MER2_type 2845 2990 -39 23 0 0 0 chr21 10054895 10054918 -24852652 + AT_rich Low_complexity Low_complexity 1 23 0 549 311 27 31 chr21 10055166 10055388 -24852182 - LTR33 LTR ERVL -298 223 3 2151 114 0 0 chr21 10056330 10056627 -24850943 - AluSg SINE Alu -13 297 1 21 36 0 0 chr21 10057161 10057189 -24850381 + AT_rich Low_complexity Low_complexity 1 28 0 1126 259 4 8 chr21 10057324 10057575 -24849995 + MLT1A1 LTR MaLR 114 363 -2 22 0 0 0 chr21 10058360 10058382 -24849188 + AT_rich Low_complexity Low_complexity 1 22 0 410 199 157 99 chr21 10058979 10059048 -24848522 - LTR48 LTR ERV1 -7 780 716 3364 158 5 34 chr21 10059048 10059675 -24847895 - MER4B LTR ERV1 -1 609 1 410 199 157 99 chr21 10059675 10059796 -24847774 - LTR48 LTR ERV1 -71 716 579 859 196 127 59 chr21 10059817 10060198 -24847372 - LTR48 LTR ERV1 -337 450 1 2645 191 61 2 chr21 10060212 10060756 -24846814 + LTR59 LTR ERV1 1 576 -21 409 308 112 6 chr21 10061792 10061961 -24845609 + LTR1 LTR ERV1 36 222 -563 1091 226 109 66 chr21 10062028 10062422 -24845148 + LTR1B LTR ERV1 311 721 -105 301 176 0 0 chr21 10062644 10062695 -24844875 - L1MC4 LINE L1 -1339 6703 6653 1426 163 45 120 chr21 10062697 10063072 -24844498 + MER7A DNA MER2_type 1 345 -1 294 29 0 0 chr21 10063072 10063107 -24844463 + (CA)n Simple_repeat Simple_repeat 2 36 0 947 264 108 60 chr21 10063142 10063577 -24843993 - MLT2B1 LTR ERVL -64 456 1 198 103 0 0 chr21 10064189 10064218 -24843352 + (TC)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr21 10064959 10064997 -24842573 + AT_rich Low_complexity Low_complexity 1 38 0 1140 183 10 0 chr21 10064997 10065205 -24842365 - MER2 DNA MER2_type -134 210 1 1613 222 45 82 chr21 10065348 10066052 -24841518 - L1MEc LINE L1 -1454 4761 4084 1602 196 11 21 chr21 10066202 10066555 -24841015 - MER21B LTR ERV1 -459 404 8 565 301 90 13 chr21 10066566 10067034 -24840536 - L1MEc LINE L1 -2275 3940 3420 1801 180 38 24 chr21 10067052 10067425 -24840145 - MER65A LTR ERV1 -28 417 40 986 127 6 0 chr21 10067475 10067632 -24839938 - L1PB1 LINE L1 0 6151 5994 750 315 45 10 chr21 10067650 10067964 -24839606 - L1MEc LINE L1 -2787 3428 3104 600 244 90 15 chr21 10067965 10068231 -24839339 - L1MEc LINE L1 -3129 3086 2801 1468 253 73 32 chr21 10068492 10069025 -24838545 - L1MEc LINE L1 -3876 2520 1966 4312 24 2 0 chr21 10069069 10069575 -24837995 - L1PA3 LINE L1 -1141 5005 4499 7551 31 0 1 chr21 10069575 10070747 -24836823 + L1PA3 LINE L1 4985 6155 0 2318 171 21 23 chr21 10070978 10071412 -24836158 - Tigger2a DNA MER2_type 0 434 2 257 151 19 0 chr21 10071418 10071471 -24836099 + (TG)n Simple_repeat Simple_repeat 1 54 0 688 262 103 28 chr21 10071487 10071777 -24835793 - L1MEc LINE L1 -4470 1926 1615 263 288 44 12 chr21 10072192 10072352 -24835218 - L1MEc LINE L1 -5011 1194 1030 229 268 0 0 chr21 10072357 10072413 -24835157 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 2265 104 0 3 chr21 10072412 10072743 -24834827 - AluSc SINE Alu 0 330 1 2332 168 36 19 chr21 10073219 10073695 -24833875 - L1MA4 LINE L1 -114 6186 5703 21 0 0 0 chr21 10073922 10073943 -24833627 + AT_rich Low_complexity Low_complexity 1 21 0 1522 201 38 0 chr21 10074069 10074382 -24833188 + L1MC3 LINE L1 7198 7522 -263 23 33 0 0 chr21 10074486 10074516 -24833054 + AT_rich Low_complexity Low_complexity 1 30 0 1770 159 3 7 chr21 10074595 10074884 -24832686 - AluSx SINE Alu -24 288 1 3532 146 57 33 chr21 10076143 10076994 -24830576 + LTR12 LTR ERV1 59 670 -1 1109 194 32 14 chr21 10078642 10078859 -24828711 - AluJo SINE Alu -91 221 1 1571 190 14 11 chr21 10078859 10079212 -24828358 - L1MA4 LINE L1 -815 5331 4978 328 274 68 27 chr21 10079222 10079368 -24828202 - L1M2a LINE L1 -5429 1739 1588 414 85 0 0 chr21 10080185 10080244 -24827326 + (TG)n Simple_repeat Simple_repeat 2 60 0 304 335 87 5 chr21 10080450 10080635 -24826935 - MIR SINE MIR -47 215 16 190 280 32 65 chr21 10083633 10083726 -24823844 - MIR SINE MIR -46 216 127 344 279 29 10 chr21 10083783 10083887 -24823683 + MER5A DNA MER1_type 7 112 -77 1924 247 29 11 chr21 10084288 10084737 -24822833 - MER70B LTR ERVL -121 457 1 204 40 0 0 chr21 10084746 10084771 -24822799 + (CA)n Simple_repeat Simple_repeat 2 26 0 2081 104 0 0 chr21 10085035 10085340 -24822230 + AluSg1 SINE Alu 2 306 0 2210 108 0 0 chr21 10085899 10086204 -24821366 + AluSg SINE Alu 1 305 -5 3105 183 34 9 chr21 10086834 10087489 -24820081 - L1PA13 LINE L1 -756 5390 4720 4680 130 39 0 chr21 10087498 10088246 -24819324 + L1PA13 LINE L1 5385 6161 -2 2061 95 23 0 chr21 10088276 10088581 -24818989 + L1PA13 LINE L1 5845 6156 -7 837 120 8 41 chr21 10090189 10090436 -24817134 + (GAAA)n Simple_repeat Simple_repeat 1 238 0 23 0 0 0 chr21 10091391 10091414 -24816156 + AT_rich Low_complexity Low_complexity 1 23 0 1333 301 64 36 chr21 10093138 10093839 -24813731 - L2 LINE L2 -338 2976 2256 425 267 40 0 chr21 10094672 10094773 -24812797 + Charlie1 DNA MER1_type 2 106 -2655 2208 44 0 11 chr21 10094773 10095043 -24812527 + AluY SINE Alu 13 279 -32 360 0 0 0 chr21 10095043 10095083 -24812487 + (CAA)n Simple_repeat Simple_repeat 3 42 0 21 0 0 0 chr21 10095198 10095219 -24812351 + AT_rich Low_complexity Low_complexity 1 21 0 334 315 8 16 chr21 10096512 10096639 -24810931 + (CATA)n Simple_repeat Simple_repeat 2 127 0 23 54 0 0 chr21 10096697 10096734 -24810836 + AT_rich Low_complexity Low_complexity 1 37 0 491 325 124 43 chr21 10096810 10097114 -24810456 - LTR67 LTR ERVL -47 510 153 1356 222 52 44 chr21 10097114 10097501 -24810069 - MLT1B LTR MaLR 0 390 1 491 325 124 43 chr21 10097501 10097664 -24809906 - LTR67 LTR ERVL -404 153 5 6258 157 15 17 chr21 10098378 10099307 -24808263 - L1MA3 LINE L1 -3 7721 6792 2107 103 0 23 chr21 10099307 10099609 -24807961 - AluSx SINE Alu -17 295 1 6258 157 15 17 chr21 10099609 10100685 -24806885 - L1MA3 LINE L1 -932 6792 5710 5228 189 24 25 chr21 10100930 10102113 -24805457 - L1MA3 LINE L1 -1861 5704 4524 4628 141 26 41 chr21 10102115 10102487 -24805083 - L1MA3 LINE L1 -3783 3782 3406 270 0 0 0 chr21 10102487 10102517 -24805053 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1759 187 0 0 chr21 10102524 10102808 -24804762 - AluJo SINE Alu -26 286 3 4628 141 26 41 chr21 10102808 10103458 -24804112 - L1MA3 LINE L1 -4165 3400 2764 7070 200 35 14 chr21 10103446 10104968 -24802602 - L1MA3 LINE L1 -5683 1882 11 2164 100 0 0 chr21 10104988 10105313 -24802257 + AluY SINE Alu 1 325 0 285 246 15 0 chr21 10105890 10105955 -24801615 - MER63 DNA MER1_type -6 1055 990 2452 94 28 3 chr21 10107415 10107776 -24799794 + L1PA13 LINE L1 5784 6153 -10 278 172 17 0 chr21 10107811 10107869 -24799701 - L1M3 LINE L1 -580 5600 5542 791 191 45 10 chr21 10107837 10108042 -24799528 - L1PA8A LINE L1 -584 5547 5333 2897 182 31 0 chr21 10108033 10108577 -24798993 + L1MB1 LINE L1 5611 6171 -18 21 36 0 0 chr21 10108781 10108809 -24798761 + AT_rich Low_complexity Low_complexity 1 28 0 2121 103 0 45 chr21 10109372 10109682 -24797888 + AluSg SINE Alu 1 296 -14 624 227 91 45 chr21 10112548 10112746 -24794824 + MER58C DNA MER1_type 9 215 0 21 36 0 0 chr21 10113810 10113838 -24793732 + AT_rich Low_complexity Low_complexity 1 28 0 457 336 19 24 chr21 10115340 10115551 -24792019 + MIR SINE MIR 53 262 0 2085 130 0 3 chr21 10116196 10116503 -24791067 - AluSg SINE Alu -4 306 1 360 282 9 9 chr21 10117748 10117858 -24789712 - MIR SINE MIR -74 188 79 327 282 145 24 chr21 10118364 10118488 -24789082 - MIR SINE MIR -103 159 21 225 88 0 0 chr21 10120124 10120158 -24787412 + L1M2 LINE L1 5529 5562 -738 1505 174 8 36 chr21 10120181 10120747 -24786823 - L1M1 LINE L1 -768 6237 5688 1776 72 0 56 chr21 10120747 10120998 -24786572 - AluSg SINE Alu -10 300 64 806 201 29 0 chr21 10120999 10121173 -24786397 - L1M1 LINE L1 -1210 5638 5460 967 106 0 0 chr21 10121177 10121309 -24786261 - AluY SINE Alu -9 302 171 9312 206 31 21 chr21 10121309 10124863 -24782707 - L1M1 LINE L1 -1374 5474 1883 1729 191 16 24 chr21 10124863 10125241 -24782329 - THE1C LTR MaLR 0 375 1 6928 150 18 9 chr21 10125241 10126539 -24781031 - THE1C-int LTR MaLR 0 1580 233 2336 163 63 16 chr21 10126541 10126825 -24780745 - L1M3 LINE L1 -429 5739 5470 2006 200 76 18 chr21 10126825 10126960 -24780610 + MER70A LRE ERV 1 127 -345 2510 72 0 0 chr21 10126960 10127264 -24780306 - AluY SINE Alu -7 304 1 2006 200 76 18 chr21 10127264 10127574 -24779996 + MER70A LRE ERV 127 472 0 2336 163 63 16 chr21 10127574 10127823 -24779747 - L1M3 LINE L1 -698 5470 5183 582 277 92 67 chr21 10127834 10128103 -24779467 - L1M4 LINE L1 -3212 2934 2648 2435 78 0 3 chr21 10128103 10128409 -24779161 - AluY SINE Alu -6 305 1 582 277 92 67 chr21 10128409 10128587 -24778983 - L1M4 LINE L1 -3498 2648 2476 2782 185 49 6 chr21 10129445 10129938 -24777632 + MLT2B3 LTR ERVL 1 520 -34 663 58 39 0 chr21 10129938 10130042 -24777528 + (TCTA)n Simple_repeat Simple_repeat 1 108 0 2782 185 49 6 chr21 10130042 10130079 -24777491 + MLT2B3 LTR ERVL 520 554 0 886 183 91 164 chr21 10130613 10130693 -24776877 - MSTB2 LTR MaLR 0 457 373 1919 129 0 57 chr21 10130693 10131010 -24776560 + AluY SINE Alu 1 299 -12 2506 71 0 3 chr21 10131010 10131321 -24776249 + AluY SINE Alu 1 310 -1 886 183 91 164 chr21 10131321 10131667 -24775903 - MSTB2 LTR MaLR -83 374 68 1854 118 4 4 chr21 10131667 10131937 -24775633 - AluSx SINE Alu -9 303 34 886 183 91 164 chr21 10131937 10132001 -24775569 - MSTB2 LTR MaLR -389 68 1 27 0 0 0 chr21 10132012 10132039 -24775531 + AT_rich Low_complexity Low_complexity 1 27 0 1542 179 10 19 chr21 10132304 10132616 -24774954 + AluSx SINE Alu 1 309 -3 280 241 17 0 chr21 10132883 10132941 -24774629 + AluYb8 SINE Alu 133 191 -117 551 239 17 0 chr21 10133052 10133169 -24774401 + AluJ SINE Alu 1 119 -193 191 130 43 14 chr21 10133169 10133238 -24774332 + (TA)n Simple_repeat Simple_repeat 1 71 0 695 205 132 24 chr21 10133238 10133404 -24774166 + AluJ SINE Alu 125 308 -4 4572 138 81 19 chr21 10133404 10134959 -24772611 + pTR5 LTR ERV1 743 2451 0 520 84 0 69 chr21 10134965 10135096 -24772474 + (GGGA)n Simple_repeat Simple_repeat 4 125 0 23 33 0 0 chr21 10135671 10135701 -24771869 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr21 10136390 10136424 -24771146 + AT_rich Low_complexity Low_complexity 1 34 0 770 276 40 0 chr21 10138307 10138481 -24769089 - MER5A DNA MER1_type 0 189 9 21 36 0 0 chr21 10138814 10138842 -24768728 + AT_rich Low_complexity Low_complexity 1 28 0 2160 169 56 29 chr21 10138942 10139387 -24768183 + LOR1b LTR ERV1 1 457 -4 22 56 0 0 chr21 10139401 10139437 -24768133 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr21 10140267 10140291 -24767279 + (CA)n Simple_repeat Simple_repeat 2 25 0 687 275 9 22 chr21 10140450 10140672 -24766898 + AluJo SINE Alu 1 219 -93 1718 158 45 204 chr21 10140672 10141432 -24766138 - LTR12 LTR ERV1 -28 643 5 266 135 0 0 chr21 10141457 10141494 -24766076 + AluJo SINE Alu 200 236 -66 3037 165 94 28 chr21 10141546 10142281 -24765289 - LTR1B LTR ERV1 -29 756 4 357 82 148 0 chr21 10142282 10142343 -24765227 + AluJo SINE Alu 233 302 0 396 0 0 0 chr21 10143670 10143714 -24763856 + (CA)n Simple_repeat Simple_repeat 1 44 0 2489 152 70 2 chr21 10143728 10144182 -24763388 + MER31A LTR ERV1 1 485 0 198 328 60 52 chr21 10144554 10144688 -24762882 - L2 LINE L2 -10 3303 3169 2152 107 0 7 chr21 10145074 10145373 -24762197 - AluSq SINE Alu -10 303 7 2268 91 0 3 chr21 10146180 10146489 -24761081 + AluY SINE Alu 1 308 -3 21 0 0 0 chr21 10147487 10147508 -24760062 + AT_rich Low_complexity Low_complexity 1 21 0 1034 129 24 0 chr21 10149035 10149205 -24758365 + L1M1 LINE L1 5424 5597 -708 767 252 41 12 chr21 10149324 10149559 -24758011 - MER76 LTR ERV 0 688 447 953 129 8 162 chr21 10149559 10149799 -24757771 + MER67B LTR ERV1 1 203 -458 1427 244 47 3 chr21 10149847 10150187 -24757383 - MLT1A1 LTR MaLR -8 357 3 429 224 42 28 chr21 10150190 10150360 -24757210 + MER67C LTR ERV1 204 393 -268 1770 123 117 23 chr21 10150663 10151005 -24756565 + THE1C LTR MaLR 2 375 0 201 121 0 0 chr21 10151554 10151587 -24755983 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 469 207 52 26 chr21 10153767 10153960 -24753610 + L1M4 LINE L1 2304 2501 -3645 788 286 64 21 chr21 10154147 10154753 -24752817 + L1M4 LINE L1 2725 3356 -2790 827 236 51 39 chr21 10155132 10155386 -24752184 + MLT1C LTR MaLR 59 315 -152 328 253 0 5 chr21 10155419 10155525 -24752045 + MLT1E2 LTR MaLR 402 626 0 2961 209 57 5 chr21 10155528 10156175 -24751395 + MLT1E2-int LTR MaLR 4 684 -687 1893 205 60 32 chr21 10156225 10156791 -24750779 - L1MDb LINE L1 -5020 1389 808 450 326 57 21 chr21 10156852 10157045 -24750525 - L1MDb LINE L1 -5750 659 460 1549 303 35 4 chr21 10157047 10157536 -24750034 - L1MDb LINE L1 -5892 517 14 971 282 59 8 chr21 10157553 10157908 -24749662 + L1M4 LINE L1 3547 3919 -2227 25 99 0 0 chr21 10158334 10158415 -24749155 + AT_rich Low_complexity Low_complexity 1 81 0 211 152 261 0 chr21 10158455 10158501 -24749069 - L2 LINE L2 -12 3260 3203 1680 158 20 35 chr21 10159001 10159349 -24748221 + Tigger2a DNA MER2_type 1 343 -91 524 176 8 92 chr21 10159403 10159522 -24748048 + Tigger2a DNA MER2_type 325 433 -1 243 306 0 73 chr21 10159542 10159652 -24747918 + L1M2 LINE L1 5465 5569 -608 377 20 0 20 chr21 10159947 10159998 -24747572 + (TA)n Simple_repeat Simple_repeat 2 51 0 216 0 0 0 chr21 10160023 10160047 -24747523 + (CA)n Simple_repeat Simple_repeat 2 25 0 297 51 0 0 chr21 10162010 10162049 -24745521 + (TG)n Simple_repeat Simple_repeat 1 39 0 2102 97 0 56 chr21 10162351 10162670 -24744900 + AluSg SINE Alu 1 301 -9 217 39 96 19 chr21 10162671 10162723 -24744847 + (TA)n Simple_repeat Simple_repeat 2 57 0 252 0 0 0 chr21 10162723 10162751 -24744819 + (GA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr21 10163150 10163171 -24744399 + AT_rich Low_complexity Low_complexity 1 21 0 1706 187 18 3 chr21 10163739 10164071 -24743499 - MER44D DNA MER2_type -1 608 2 213 250 0 34 chr21 10164298 10164386 -24743184 + (CATATA)n Simple_repeat Simple_repeat 6 90 0 2451 171 21 5 chr21 10164440 10164861 -24742709 + MSTA LTR MaLR 1 428 0 1832 197 19 6 chr21 10165064 10165424 -24742146 + MLT1A1 LTR MaLR 1 365 0 360 0 0 0 chr21 10166053 10166093 -24741477 + (TA)n Simple_repeat Simple_repeat 1 40 0 1312 204 14 6 chr21 10166315 10166672 -24740898 + L1 LINE L1 3092 3451 -2695 3738 136 34 57 chr21 10166672 10167425 -24740145 + L1PB4 LINE L1 5415 6155 -1 613 205 0 0 chr21 10167494 10167606 -24739964 + FLAM_C SINE Alu 22 133 -10 1170 234 50 39 chr21 10167608 10167989 -24739581 + MLT1C LTR MaLR 83 467 0 23 0 0 0 chr21 10168482 10168505 -24739065 + AT_rich Low_complexity Low_complexity 1 23 0 878 255 56 48 chr21 10170124 10170612 -24736958 + MER39 LTR ERV1 9 707 0 1603 169 41 7 chr21 10170697 10170987 -24736583 - MER7A DNA MER2_type 0 346 49 255 31 0 0 chr21 10171332 10171364 -24736206 + (TGG)n Simple_repeat Simple_repeat 2 33 0 695 337 53 26 chr21 10171413 10171856 -24735714 - L2 LINE L2 -266 3006 2554 23 78 0 0 chr21 10172044 10172095 -24735475 + AT_rich Low_complexity Low_complexity 1 51 0 28 61 0 0 chr21 10172225 10172274 -24735296 + AT_rich Low_complexity Low_complexity 1 49 0 288 233 83 17 chr21 10172617 10172737 -24734833 + MER114 LTR ERV 287 414 -234 2170 94 14 14 chr21 10173236 10173568 -24734002 - AluSq SINE Alu 0 313 1 1743 78 0 0 chr21 10174124 10174341 -24733229 + AluY SINE Alu 1 217 -94 1091 85 7 0 chr21 10174343 10174484 -24733086 + AluY SINE Alu 76 217 -94 23 33 0 0 chr21 10174920 10174950 -24732620 + AT_rich Low_complexity Low_complexity 1 30 0 2109 77 32 42 chr21 10175553 10175864 -24731706 - AluY SINE Alu -2 309 2 32 0 0 0 chr21 10177024 10177056 -24730514 + AT_rich Low_complexity Low_complexity 1 32 0 32 43 0 0 chr21 10177150 10177196 -24730374 + AT_rich Low_complexity Low_complexity 1 46 0 1431 197 18 25 chr21 10178202 10178486 -24729084 + AluJo SINE Alu 1 282 -30 3033 35 0 3 chr21 10178530 10178899 -24728671 - L1PA4 LINE L1 -4 6151 5784 1354 273 85 56 chr21 10178969 10179545 -24728025 + MLT1E LTR MaLR 1 593 0 23 0 0 0 chr21 10179833 10179856 -24727714 + AT_rich Low_complexity Low_complexity 1 23 0 488 291 129 61 chr21 10180111 10180437 -24727133 - L2 LINE L2 -1212 2102 1755 2512 222 19 41 chr21 10180520 10180748 -24726822 - MLT2B3 LTR ERVL -3 551 320 906 249 71 40 chr21 10180748 10181102 -24726468 + MLT1A1 LTR MaLR 1 365 0 2512 222 19 41 chr21 10181102 10181436 -24726134 - MLT2B3 LTR ERVL -234 320 1 505 291 98 35 chr21 10181447 10181701 -24725869 - L2 LINE L2 -1657 1657 1388 1185 331 63 16 chr21 10181767 10181867 -24725703 - L2 LINE L2 -2016 1298 1204 2291 63 0 7 chr21 10181867 10182195 -24725375 - AluY SINE Alu 0 326 1 1185 331 63 16 chr21 10182195 10182601 -24724969 - L2 LINE L2 -2110 1204 767 433 281 22 58 chr21 10182842 10182981 -24724589 + MER5A DNA MER1_type 56 189 0 401 310 39 0 chr21 10183106 10183235 -24724335 - L2 LINE L2 -2758 556 423 547 271 54 12 chr21 10183267 10183433 -24724137 - MIR SINE MIR -15 247 75 233 336 9 35 chr21 10183905 10184018 -24723552 + L2 LINE L2 2654 2763 -551 230 250 14 0 chr21 10184093 10184165 -24723405 + CT-rich Low_complexity Low_complexity 1 73 0 244 341 35 77 chr21 10184550 10184720 -24722850 + L2 LINE L2 3072 3234 -38 448 273 136 15 chr21 10185628 10185892 -24721678 + MER20B DNA MER1_type 63 358 -426 372 162 108 27 chr21 10185971 10186082 -24721488 + MER20B DNA MER1_type 609 728 -56 738 222 18 18 chr21 10186100 10186267 -24721303 - MER63 DNA MER1_type -217 844 678 2314 42 14 0 chr21 10186960 10187243 -24720327 + AluY SINE Alu 1 287 -24 1732 138 164 0 chr21 10187423 10187734 -24719836 + THE1B LTR MaLR 1 362 -2 26 0 0 0 chr21 10187764 10187790 -24719780 + AT_rich Low_complexity Low_complexity 1 26 0 204 171 24 0 chr21 10188262 10188303 -24719267 + A-rich Low_complexity Low_complexity 4 45 0 249 33 0 0 chr21 10188490 10188520 -24719050 + (TA)n Simple_repeat Simple_repeat 2 31 0 754 337 63 40 chr21 10189880 10190325 -24717245 - L2 LINE L2 -1 3312 2858 1560 122 12 4 chr21 10190620 10190867 -24716703 + L1PB1 LINE L1 5902 6150 -1 21 0 0 0 chr21 10190867 10190888 -24716682 + AT_rich Low_complexity Low_complexity 1 21 0 4431 187 36 25 chr21 10190937 10192299 -24715271 - L1MA4 LINE L1 -5 6295 4910 2636 146 42 15 chr21 10192300 10192982 -24714588 - L1P4 LINE L1 -440 5725 5026 21 36 0 0 chr21 10193118 10193146 -24714424 + AT_rich Low_complexity Low_complexity 1 28 0 2074 116 7 0 chr21 10194048 10194333 -24713237 + AluSc SINE Alu 9 295 -14 674 289 6 6 chr21 10195365 10195538 -24712032 - MER70B LTR ERVL -405 173 1 1192 173 43 78 chr21 10195538 10195742 -24711828 + L1MA7 LINE L1 5957 6146 -145 2730 50 3 0 chr21 10195742 10196081 -24711489 - LTR14A LTR ERVK -4 340 1 1192 173 43 78 chr21 10196081 10196223 -24711347 + L1MA7 LINE L1 6146 6291 0 315 34 9 4 chr21 10196722 10196768 -24710802 - L1P4 LINE L1 -496 5670 5624 405 189 53 0 chr21 10196768 10196863 -24710707 + L1PA15 LINE L1 6053 6152 -13 204 67 0 0 chr21 10196890 10196920 -24710650 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 270 333 52 0 chr21 10197359 10197455 -24710115 - LTR33A LTR ERVL -364 159 59 686 358 34 7 chr21 10198826 10199122 -24708448 - ERVL LTR ERVL -3402 2362 2059 1732 158 45 3 chr21 10201517 10201809 -24705761 - AluSx SINE Alu -8 304 1 192 40 0 0 chr21 10203187 10203212 -24704358 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr21 10204983 10205007 -24702563 + AT_rich Low_complexity Low_complexity 1 24 0 203 176 0 0 chr21 10205386 10205420 -24702150 + T-rich Low_complexity Low_complexity 2 35 0 600 270 46 46 chr21 10205590 10205849 -24701721 + L1MC4 LINE L1 7689 7947 -95 25 31 0 0 chr21 10205932 10205964 -24701606 + AT_rich Low_complexity Low_complexity 1 32 0 1279 182 151 44 chr21 10206472 10206857 -24700713 - MSTB LTR MaLR 0 426 1 2536 89 20 0 chr21 10207031 10207378 -24700192 - THE1A LTR MaLR -1 354 1 25 51 0 0 chr21 10208427 10208466 -24699104 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr21 10208704 10208725 -24698845 + AT_rich Low_complexity Low_complexity 1 21 0 402 153 0 24 chr21 10208810 10208895 -24698675 - MLT1A1-int LTR MaLR -1651 84 2 1541 186 24 61 chr21 10208897 10209273 -24698297 - MLT1A1 LTR MaLR -1 364 3 1443 157 50 8 chr21 10209527 10209820 -24697750 - AluJb SINE Alu 0 314 11 379 88 55 11 chr21 10211597 10211688 -24695882 + (TAGA)n Simple_repeat Simple_repeat 4 98 0 2398 86 0 0 chr21 10212070 10212374 -24695196 - AluSx SINE Alu -7 305 2 466 277 26 73 chr21 10213138 10213372 -24694198 + MIR SINE MIR 21 246 -16 2177 116 7 0 chr21 10213470 10213772 -24693798 + AluSg SINE Alu 1 304 -6 6594 75 12 2 chr21 10214090 10215074 -24692496 + L1PA7 LINE L1 5159 6151 -3 3330 150 36 8 chr21 10215208 10215821 -24691749 - L1MA4A LINE L1 -9 6294 5665 2131 186 37 8 chr21 10215821 10216432 -24691138 + L1P LINE L1 4798 5425 -726 2507 61 0 3 chr21 10216762 10217074 -24690496 + AluY SINE Alu 1 311 0 228 135 0 0 chr21 10217365 10217402 -24690168 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 333 0 0 0 chr21 10217798 10217835 -24689735 + (TA)n Simple_repeat Simple_repeat 2 38 0 255 61 0 0 chr21 10219050 10219083 -24688487 + (TG)n Simple_repeat Simple_repeat 2 34 0 2190 91 0 7 chr21 10219162 10219478 -24688092 + AluY SINE Alu 1 314 0 29 47 0 0 chr21 10219719 10219762 -24687808 + AT_rich Low_complexity Low_complexity 1 43 0 355 298 96 59 chr21 10220406 10220678 -24686892 + L1MEc LINE L1 1665 1946 -4450 8107 178 42 13 chr21 10220773 10222278 -24685292 + Tigger2 DNA MER2_type 1169 2718 0 180 334 105 65 chr21 10222830 10223201 -24684369 - L2 LINE L2 -777 2537 2152 357 24 0 0 chr21 10225971 10226013 -24681557 + (TG)n Simple_repeat Simple_repeat 1 42 0 1871 121 0 48 chr21 10226013 10226302 -24681268 - AluSx SINE Alu -30 282 8 25 0 0 0 chr21 10226308 10226333 -24681237 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 10226636 10226658 -24680912 + AT_rich Low_complexity Low_complexity 1 22 0 10671 159 48 6 chr21 10227211 10228580 -24678990 - L1M1 LINE L1 -4362 3203 1598 363 44 0 0 chr21 10228580 10228625 -24678945 + (TC)n Simple_repeat Simple_repeat 2 46 0 10671 159 48 6 chr21 10228625 10229314 -24678256 - L1M1 LINE L1 -5967 1598 939 1105 227 20 20 chr21 10229296 10229547 -24678023 - L1M1 LINE L1 -7306 259 9 645 230 61 0 chr21 10229583 10229796 -24677774 - L1MA7 LINE L1 -5 6286 6061 26 0 0 0 chr21 10230115 10230141 -24677429 + AT_rich Low_complexity Low_complexity 1 26 0 1489 81 25 0 chr21 10230144 10230341 -24677229 + AluY SINE Alu 1 202 -109 454 48 0 0 chr21 10230344 10230406 -24677164 + AluY SINE Alu 237 298 -13 2419 83 41 0 chr21 10230862 10231201 -24676369 - THE1A LTR MaLR 0 355 3 10994 104 5 19 chr21 10231203 10232235 -24675335 - THE1A-int LTR MaLR 0 1580 578 2238 104 0 0 chr21 10232235 10232534 -24675036 + AluY SINE Alu 1 299 -12 10994 104 5 19 chr21 10232534 10233103 -24674467 - THE1A-int LTR MaLR -1002 578 2 2630 80 17 0 chr21 10233104 10233453 -24674117 - THE1A LTR MaLR 0 355 1 22 0 0 0 chr21 10233787 10233809 -24673761 + AT_rich Low_complexity Low_complexity 1 22 0 290 131 0 0 chr21 10233809 10233867 -24673703 - Alu SINE Alu -263 39 1 1626 151 32 4 chr21 10233937 10234215 -24673355 + AluSx SINE Alu 21 306 -6 3353 106 32 0 chr21 10234917 10235415 -24672155 + MER75 DNA T2_type 1 514 0 652 288 26 66 chr21 10235877 10236148 -24671422 + MIR SINE MIR 3 262 0 1141 176 41 5 chr21 10236926 10237147 -24670423 + MLT1B LTR MaLR 27 255 -135 658 245 90 103 chr21 10237209 10237576 -24669994 - MLT1A1 LTR MaLR 0 365 4 6110 233 40 52 chr21 10237579 10238710 -24668860 - MLT1A1-int LTR MaLR 0 1735 631 2355 87 0 10 chr21 10238710 10239019 -24668551 + AluY SINE Alu 1 306 -5 6110 233 40 52 chr21 10239019 10239640 -24667930 - MLT1A1-int LTR MaLR -1104 631 4 183 107 0 0 chr21 10239683 10239711 -24667859 - MER5B DNA MER1_type -34 144 117 225 65 0 0 chr21 10239974 10240005 -24667565 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 34 24 0 0 chr21 10242600 10242641 -24664929 + AT_rich Low_complexity Low_complexity 1 41 0 2243 85 22 77 chr21 10242652 10243016 -24664554 - MLT2A1 LTR ERVL 0 444 101 720 149 126 11 chr21 10243016 10243055 -24664515 - Ricksha DNA DNA -2858 388 330 41991 76 14 11 chr21 10243055 10246698 -24660872 - HERVL-A1-A1 LTR ERVL 0 5654 1985 1953 110 24 0 chr21 10246698 10246988 -24660582 + AluSq SINE Alu 13 309 -4 41991 76 14 11 chr21 10246988 10248980 -24658590 - HERVL-A1-A1 LTR ERVL -3669 1985 1 3005 78 45 5 chr21 10248982 10249407 -24658163 - MLT2A1 LTR ERVL -2 442 1 306 50 0 0 chr21 10249718 10249758 -24657812 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr21 10249849 10249878 -24657692 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 10250812 10250833 -24656737 + AT_rich Low_complexity Low_complexity 1 21 0 298 145 14 14 chr21 10251240 10251309 -24656261 + GA-rich Low_complexity Low_complexity 4 72 0 1699 266 17 29 chr21 10251379 10251897 -24655673 - LTR40a LTR ERVL -2 517 6 26 0 0 0 chr21 10252099 10252125 -24655445 + AT_rich Low_complexity Low_complexity 1 26 0 205 292 7 36 chr21 10252724 10252861 -24654709 + (CATATA)n Simple_repeat Simple_repeat 1 133 0 2303 110 30 0 chr21 10254934 10255270 -24652300 - L1PA13 LINE L1 -217 5946 5601 1431 99 28 0 chr21 10255271 10255482 -24652088 + L1PA13 LINE L1 5947 6163 0 25 0 0 0 chr21 10256458 10256483 -24651087 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr21 10257047 10257070 -24650500 + AT_rich Low_complexity Low_complexity 1 23 0 2560 61 0 0 chr21 10258284 10258595 -24648975 + AluY SINE Alu 1 311 0 1886 133 0 29 chr21 10258864 10259172 -24648398 + AluSg SINE Alu 11 309 -1 1122 230 28 62 chr21 10259554 10259775 -24647795 + MLT1A1 LTR MaLR 3 210 -155 2081 105 0 7 chr21 10259775 10260093 -24647477 + AluSx SINE Alu 1 316 0 1122 230 28 62 chr21 10260093 10260222 -24647348 + MLT1A1 LTR MaLR 210 342 -23 1630 91 39 0 chr21 10260841 10261073 -24646497 - L1PA7 LINE L1 -1101 5045 4805 6318 74 11 16 chr21 10261073 10262162 -24645408 + L1PA7 LINE L1 5069 6154 0 1714 121 38 0 chr21 10262550 10262814 -24644756 - LTR28 LTR ERV1 -746 274 1 527 216 0 0 chr21 10263586 10263725 -24643845 + L1PA16 LINE L1 6052 6190 0 25 75 0 0 chr21 10264644 10264697 -24642873 + AT_rich Low_complexity Low_complexity 1 53 0 279 180 0 0 chr21 10265324 10265374 -24642196 - MERVL LTR ERVL -1498 4156 4107 2465 108 28 19 chr21 10265429 10265790 -24641780 - THE1B LTR MaLR 0 364 1 234 191 0 0 chr21 10265912 10265959 -24641611 + CT-rich Low_complexity Low_complexity 2 48 0 1301 62 6 0 chr21 10265959 10266135 -24641435 + (TTC)n Simple_repeat Simple_repeat 2 178 0 297 264 14 11 chr21 10266190 10266299 -24641271 - MERVL LTR ERVL -1686 3799 3724 28 0 0 0 chr21 10266368 10266396 -24641174 + AT_rich Low_complexity Low_complexity 1 28 0 4373 123 33 24 chr21 10266396 10267119 -24640451 - L1PA16 LINE L1 -9 6157 5428 9043 180 9 26 chr21 10267211 10268067 -24639503 - L1PA13 LINE L1 0 6814 5945 1515 170 0 90 chr21 10268067 10268390 -24639180 - AluJb SINE Alu -18 294 1 9043 180 9 26 chr21 10268390 10270212 -24637358 - L1PA13 LINE L1 -869 5945 4167 1674 253 11 9 chr21 10270225 10270668 -24636902 - L1PA13 LINE L1 -3802 2995 2552 400 176 14 0 chr21 10270662 10270736 -24636834 - L1PA13 LINE L1 -4140 2657 2583 8795 219 51 18 chr21 10270729 10272597 -24634973 - L1PA13 LINE L1 -4856 1931 1 548 284 81 11 chr21 10272944 10273292 -24634278 + L1ME2 LINE L1 4496 4867 -1279 1906 184 23 64 chr21 10275026 10275498 -24632072 - L1MC3 LINE L1 -108 7677 7225 193 289 12 72 chr21 10275537 10275620 -24631950 + MIR SINE MIR 72 149 -113 890 19 0 0 chr21 10276426 10276532 -24631038 + L1PA2 LINE L1 6049 6154 -1 303 292 88 29 chr21 10277595 10277732 -24629838 - L1MDa LINE L1 -3907 2633 2489 961 274 79 38 chr21 10277979 10278537 -24629033 + L1ME2 LINE L1 5535 6115 -49 250 274 0 0 chr21 10279638 10279700 -24627870 + (TA)n Simple_repeat Simple_repeat 1 62 0 1488 204 39 39 chr21 10279714 10280076 -24627494 + MLT1A2 LTR MaLR 1 362 -12 1997 122 0 3 chr21 10281052 10281340 -24626230 + AluSx SINE Alu 4 290 -22 189 0 0 0 chr21 10281340 10281361 -24626209 + (TA)n Simple_repeat Simple_repeat 1 21 0 2065 80 15 4 chr21 10281435 10281709 -24625861 - AluSg SINE Alu -21 289 13 189 213 0 0 chr21 10282128 10282175 -24625395 + (TA)n Simple_repeat Simple_repeat 1 47 0 23 108 0 0 chr21 10282198 10282291 -24625279 + AT_rich Low_complexity Low_complexity 1 93 0 26 0 0 0 chr21 10283565 10283591 -24623979 + AT_rich Low_complexity Low_complexity 1 26 0 31 58 0 0 chr21 10283653 10283705 -24623865 + AT_rich Low_complexity Low_complexity 1 52 0 1291 217 41 39 chr21 10283834 10284198 -24623372 - MLT1A1 LTR MaLR 0 365 1 2090 262 20 10 chr21 10284202 10284699 -24622871 - MLT1A1-int LTR MaLR -4 1731 1230 343 232 22 19 chr21 10284923 10285061 -24622509 - MLT1A1-int LTR MaLR -632 739 587 207 259 0 0 chr21 10285065 10285123 -24622447 + (TA)n Simple_repeat Simple_repeat 1 58 0 2246 262 11 9 chr21 10285123 10285695 -24621875 - MLT1A1-int LTR MaLR -1162 573 1 354 321 49 36 chr21 10285907 10286131 -24621439 - HAL1b LINE L1 -59 1289 1063 291 222 37 0 chr21 10288027 10288108 -24619462 + (TA)n Simple_repeat Simple_repeat 1 84 0 1472 209 31 7 chr21 10288378 10288670 -24618900 - AluJb SINE Alu -13 299 1 22 35 0 0 chr21 10289255 10289284 -24618286 + AT_rich Low_complexity Low_complexity 1 29 0 5163 182 15 5 chr21 10289353 10290425 -24617145 + L1MA4 LINE L1 4163 5245 -901 4061 165 42 13 chr21 10290463 10291200 -24616370 + L1MA4 LINE L1 5255 5969 -331 6686 54 0 0 chr21 10291200 10292032 -24615538 + L1PA7 LINE L1 5312 6143 -11 228 35 0 0 chr21 10292035 10292064 -24615506 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 4061 165 42 13 chr21 10292064 10292160 -24615410 + L1MA4 LINE L1 5970 6116 -184 568 150 50 0 chr21 10292172 10292272 -24615298 - L1PA11 LINE L1 0 6174 6070 840 180 0 33 chr21 10292272 10292452 -24615118 + L1MA4 LINE L1 6124 6300 0 380 378 56 19 chr21 10293521 10293938 -24613632 + L2 LINE L2 2619 3052 -261 276 59 59 0 chr21 10294272 10294323 -24613247 + T-rich Low_complexity Low_complexity 2 55 0 494 263 73 11 chr21 10294656 10294835 -24612735 - MLT1L LTR MaLR -4 611 422 24 53 0 0 chr21 10294902 10294940 -24612630 + AT_rich Low_complexity Low_complexity 1 38 0 600 258 31 0 chr21 10295056 10295205 -24612365 - MSTC LTR MaLR -243 153 1 2292 107 0 3 chr21 10299353 10299662 -24607908 + AluSc SINE Alu 1 308 -1 1560 83 0 5 chr21 10300184 10300402 -24607168 - L1PA7 LINE L1 -3 6151 5935 26 82 0 0 chr21 10301603 10301664 -24605906 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr21 10301934 10301957 -24605613 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr21 10302662 10302708 -24604862 + AT_rich Low_complexity Low_complexity 1 46 0 226 333 69 28 chr21 10302956 10303100 -24604470 - L2 LINE L2 -2 3311 3162 753 277 78 19 chr21 10303852 10304173 -24603397 - L1ME3A LINE L1 0 6170 5831 3250 152 42 53 chr21 10304731 10305463 -24602107 - LTR8A LTR ERV1 -3 724 1 626 248 44 67 chr21 10305836 10306134 -24601436 + L1MEc LINE L1 1826 2116 -4280 522 91 0 91 chr21 10306136 10306246 -24601324 + MER41B-int LTR ERV1 6182 6281 -50 3850 148 6 8 chr21 10306248 10306884 -24600686 + MER41B LTR ERV1 1 635 0 1322 121 118 96 chr21 10306898 10307214 -24600356 + MER41A LTR ERV1 243 534 -20 1306 205 134 16 chr21 10307214 10307521 -24600049 + MER61A LTR ERV1 1 343 0 1322 121 118 96 chr21 10307521 10307536 -24600034 + MER41A LTR ERV1 534 547 -7 965 220 95 65 chr21 10307597 10307934 -24599636 + LTR49 LTR ERV1 1 347 -248 941 169 24 0 chr21 10307901 10308067 -24599503 + LTR29 LTR ERV1 387 556 -66 201 74 0 0 chr21 10308067 10308094 -24599476 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 257 252 37 7 chr21 10308204 10308339 -24599231 + L1MEc LINE L1 2261 2399 -3997 596 148 0 20 chr21 10309251 10309384 -24598186 - AluSp/q SINE Alu 0 313 189 230 303 40 0 chr21 10309446 10309522 -24598048 + MIR SINE MIR 66 144 -64 300 53 0 0 chr21 10309530 10309568 -24598002 + (TA)n Simple_repeat Simple_repeat 2 39 0 27 0 0 0 chr21 10309672 10309699 -24597871 + AT_rich Low_complexity Low_complexity 1 27 0 1913 122 7 0 chr21 10310540 10310850 -24596720 + AluSc SINE Alu 1 312 0 602 311 58 9 chr21 10311253 10311478 -24596092 + MLT1G LTR MaLR 44 279 -311 3341 155 42 39 chr21 10312527 10313249 -24594321 - LTR8A LTR ERV1 -3 724 1 221 333 58 51 chr21 10314115 10314253 -24593317 - MER91A DNA MER1_type -2 194 56 28 61 0 0 chr21 10314296 10314345 -24593225 + AT_rich Low_complexity Low_complexity 1 49 0 443 132 0 0 chr21 10315519 10315587 -24591983 + L1PA16 LINE L1 6090 6157 -9 388 299 56 14 chr21 10315879 10316023 -24591547 + MIR SINE MIR 36 185 -77 21 0 0 0 chr21 10316191 10316212 -24591358 + AT_rich Low_complexity Low_complexity 1 21 0 1297 276 56 19 chr21 10316738 10317239 -24590331 + L1MD2 LINE L1 5825 6343 -16 623 293 22 6 chr21 10317869 10318050 -24589520 + MER5A DNA MER1_type 4 187 -2 641 289 63 3 chr21 10318306 10318631 -24588939 + L1ME LINE L1 5239 5581 -583 21215 150 14 15 chr21 10318666 10321011 -24586559 - L1P3 LINE L1 -1484 4977 2630 191 35 0 35 chr21 10321011 10321040 -24586530 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 21215 150 14 15 chr21 10321040 10323632 -24583938 - L1P3 LINE L1 -3831 2630 3 509 328 45 29 chr21 10323987 10324301 -24583269 + LTR16A1 LTR ERVL 8 326 -131 2099 113 0 20 chr21 10325095 10325395 -24582175 + AluSg SINE Alu 3 296 -14 1108 179 0 5 chr21 10326452 10326642 -24580928 + AluSc SINE Alu 119 307 -2 180 0 0 0 chr21 10326739 10326759 -24580811 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2122 96 0 4 chr21 10326759 10327040 -24580530 - AluSx SINE Alu -32 280 1 207 100 0 0 chr21 10327111 10327141 -24580429 + (TA)n Simple_repeat Simple_repeat 2 31 0 202 213 21 0 chr21 10327263 10327310 -24580260 + CT-rich Low_complexity Low_complexity 1 48 0 219 274 32 11 chr21 10327319 10327414 -24580156 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 21 36 0 0 chr21 10328106 10328134 -24579436 + AT_rich Low_complexity Low_complexity 1 28 0 239 137 0 20 chr21 10328177 10328228 -24579342 + (TA)n Simple_repeat Simple_repeat 1 50 0 825 252 51 38 chr21 10329315 10329511 -24578059 + Charlie4a DNA MER1_type 44 236 -1725 2401 229 6 4 chr21 10329511 10329982 -24577588 + MER70A LRE ERV 1 472 0 825 252 51 38 chr21 10329982 10330178 -24577392 + Charlie4a DNA MER1_type 236 441 -67 2019 201 33 26 chr21 10330180 10330788 -24576782 + L1MB2 LINE L1 5111 5720 -451 552 219 9 0 chr21 10330789 10330903 -24576667 + L1MB2 LINE L1 5952 6066 -105 509 239 48 3 chr21 10331961 10332170 -24575400 - L1M3 LINE L1 -701 5469 5273 1012 144 12 0 chr21 10332300 10332460 -24575110 - MLT1B LTR MaLR -13 377 216 260 331 38 25 chr21 10332461 10332621 -24574949 - L1MEc LINE L1 -4313 2083 1922 1088 166 9 9 chr21 10332621 10332832 -24574738 - Tigger1 DNA MER2_type 0 2418 2208 705 195 27 47 chr21 10332841 10332990 -24574580 - Tigger1 DNA MER2_type -2272 146 1 481 301 74 15 chr21 10332990 10333259 -24574311 - L1MEc LINE L1 -4471 1925 1641 24 32 0 0 chr21 10333301 10333332 -24574238 + AT_rich Low_complexity Low_complexity 1 31 0 1121 119 113 0 chr21 10333339 10333524 -24574046 - Tigger1 DNA MER2_type -511 1907 1702 9390 194 24 7 chr21 10333525 10336288 -24571282 - L1MA4A LINE L1 -263 6040 3229 4876 181 9 33 chr21 10336291 10337261 -24570309 - Tigger1 DNA MER2_type -1471 947 1 5233 169 20 17 chr21 10337261 10338260 -24569310 - L1MA9 LINE L1 -57 6255 5254 828 320 109 47 chr21 10339859 10340472 -24567098 - L2 LINE L2 -597 2717 2067 1462 220 6 40 chr21 10340625 10340948 -24566622 + AluJo SINE Alu 1 312 0 2459 60 3 0 chr21 10342119 10342420 -24565150 - AluY SINE Alu -9 302 1 346 209 128 0 chr21 10343379 10343465 -24564105 + MER3 DNA MER1_type 100 196 -13 2208 141 18 30 chr21 10343701 10344036 -24563534 - L1PA13 LINE L1 0 6163 5832 2133 116 0 3 chr21 10344036 10344339 -24563231 + AluSx SINE Alu 1 302 -10 2208 141 18 30 chr21 10344339 10344401 -24563169 - L1PA13 LINE L1 -331 5832 5771 2684 84 20 18 chr21 10344925 10345319 -24562251 + L1PA8A LINE L1 5737 6131 0 180 217 0 0 chr21 10345436 10345482 -24562088 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 2401 92 0 0 chr21 10346478 10346781 -24560789 - AluSp SINE Alu -10 303 1 212 350 65 8 chr21 10346870 10346993 -24560577 + MIR SINE MIR 22 151 -57 3657 198 24 1 chr21 10347468 10348184 -24559386 + MER6 DNA MER2_type 134 865 0 581 200 9 9 chr21 10348282 10348397 -24559173 + AluJ SINE Alu 1 115 -187 1991 137 18 54 chr21 10348397 10348783 -24558787 - THE1C LTR MaLR -2 373 1 1029 194 5 0 chr21 10348783 10348974 -24558596 + AluJ SINE Alu 108 299 -13 28 0 0 0 chr21 10350460 10350488 -24557082 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr21 10350633 10350668 -24556902 + AT_rich Low_complexity Low_complexity 1 35 0 1545 198 0 14 chr21 10350938 10351231 -24556339 + AluJb SINE Alu 5 293 -19 1951 224 33 14 chr21 10351399 10351922 -24555648 - HUERS-P2 LTR ERV1 -2528 560 2 14545 175 14 19 chr21 10351922 10354520 -24553050 + HUERS-P2 LTR ERV1 505 3088 0 1287 194 37 32 chr21 10354520 10354985 -24552585 + LTR1 LTR ERV1 1 498 -328 575 245 6 38 chr21 10355014 10355173 -24552397 + LTR1B LTR ERV1 673 826 0 21 0 0 0 chr21 10355286 10355307 -24552263 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr21 10355609 10355641 -24551929 + AT_rich Low_complexity Low_complexity 1 32 0 1982 197 40 28 chr21 10355690 10356245 -24551325 - MLT2A2 LTR ERVL 0 554 1 23 54 0 0 chr21 10356358 10356395 -24551175 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 10356579 10356609 -24550961 + AT_rich Low_complexity Low_complexity 1 30 0 23 78 0 0 chr21 10356619 10356670 -24550900 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr21 10357274 10357299 -24550271 + AT_rich Low_complexity Low_complexity 1 25 0 307 127 59 51 chr21 10357865 10357983 -24549587 + (TTATA)n Simple_repeat Simple_repeat 2 120 0 21 0 0 0 chr21 10358874 10358895 -24548675 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr21 10360147 10360172 -24547398 + AT_rich Low_complexity Low_complexity 1 25 0 22 70 0 0 chr21 10360241 10360284 -24547286 + AT_rich Low_complexity Low_complexity 1 43 0 1948 150 3 0 chr21 10360376 10360669 -24546901 - AluSx SINE Alu -18 294 1 22 35 0 0 chr21 10360778 10360807 -24546763 + AT_rich Low_complexity Low_complexity 1 29 0 1317 263 59 37 chr21 10361514 10362054 -24545516 - L1MCc LINE L1 -4988 1435 884 804 270 114 72 chr21 10362386 10363009 -24544561 - L1MCc LINE L1 -5758 665 17 288 309 37 0 chr21 10363128 10363209 -24544361 - LTR16C LTR ERVL -188 303 220 364 338 112 56 chr21 10363930 10364483 -24543087 - L2 LINE L2 -1342 1972 1389 26 0 0 0 chr21 10364528 10364554 -24543016 + AT_rich Low_complexity Low_complexity 1 26 0 3447 66 9 7 chr21 10366241 10366693 -24540877 + MLT2A2 LTR ERVL 1 453 0 354 165 10 87 chr21 10367513 10367616 -24539954 + L1MA5 LINE L1 6202 6296 -4 4464 175 27 32 chr21 10368239 10369284 -24538286 + L1MB1 LINE L1 5134 6168 0 1791 104 7 40 chr21 10369623 10369920 -24537650 + AluSx SINE Alu 1 287 -25 686 243 33 0 chr21 10372273 10372425 -24535145 + FAM SINE Alu 1 157 -28 1221 151 25 0 chr21 10373524 10373723 -24533847 + MER2 DNA MER2_type 3 206 -138 24 32 0 0 chr21 10373726 10373757 -24533813 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 10374156 10374178 -24533392 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr21 10374621 10374667 -24532903 + AT_rich Low_complexity Low_complexity 1 46 0 814 149 14 14 chr21 10374793 10374941 -24532629 - L1MA4 LINE L1 -15 6285 6138 30 77 0 0 chr21 10374955 10375020 -24532550 + AT_rich Low_complexity Low_complexity 1 65 0 23 33 0 0 chr21 10376226 10376256 -24531314 + AT_rich Low_complexity Low_complexity 1 30 0 314 193 18 28 chr21 10376647 10376756 -24530814 + (TATATG)n Simple_repeat Simple_repeat 5 112 0 965 200 36 55 chr21 10376756 10377031 -24530539 - MSTB1 LTR MaLR -1 431 162 21 0 0 0 chr21 10377311 10377332 -24530238 + AT_rich Low_complexity Low_complexity 1 21 0 31 51 0 39 chr21 10377497 10377525 -24530045 + AT_rich Low_complexity Low_complexity 1 29 -46 1860 145 10 30 chr21 10377525 10377829 -24529741 + AluSx SINE Alu 1 298 -14 31 51 0 39 chr21 10377829 10377878 -24529692 + AT_rich Low_complexity Low_complexity 29 75 0 22 35 0 0 chr21 10378060 10378089 -24529481 + AT_rich Low_complexity Low_complexity 1 29 0 2182 160 70 8 chr21 10378121 10378522 -24529048 + MSTA LTR MaLR 1 426 -2 8379 185 20 16 chr21 10378524 10380169 -24527401 + MSTA-int LTR MaLR 1 1651 0 813 135 32 14 chr21 10380169 10380334 -24527236 + MSTA LTR MaLR 1 174 -190 627 99 22 0 chr21 10380347 10380438 -24527132 + MSTA LTR MaLR 336 428 0 576 267 62 4 chr21 10380719 10380959 -24526611 + L1M4 LINE L1 2944 3197 -2949 21 36 0 0 chr21 10381153 10381181 -24526389 + AT_rich Low_complexity Low_complexity 1 28 0 331 92 10 0 chr21 10381214 10381311 -24526259 + L1PA7 LINE L1 5984 6151 -3 541 229 67 52 chr21 10381509 10381719 -24525851 - L1MD3 LINE L1 -13 7982 7770 186 133 0 0 chr21 10381723 10381753 -24525817 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1562 180 7 24 chr21 10381758 10382047 -24525523 - AluJo SINE Alu -28 284 1 492 263 122 18 chr21 10382096 10382321 -24525249 - L1MD1 LINE L1 -96 6090 5841 1650 266 80 24 chr21 10382379 10383171 -24524399 - L1MDa LINE L1 -4445 1961 1126 482 271 82 0 chr21 10383302 10383472 -24524098 - L1MDa LINE L1 -5452 957 774 2490 246 29 18 chr21 10383787 10384431 -24523139 - MSTD-int LTR MaLR -865 794 157 2275 89 0 0 chr21 10384436 10384728 -24522842 - AluY SINE Alu -19 292 1 685 192 66 36 chr21 10385581 10385748 -24521822 - MSTD LTR MaLR 0 396 225 21 57 0 0 chr21 10386446 10386481 -24521089 + AT_rich Low_complexity Low_complexity 1 35 0 180 82 41 41 chr21 10386637 10386686 -24520884 + (CAAA)n Simple_repeat Simple_repeat 1 49 0 261 235 59 25 chr21 10388592 10388711 -24518859 - L1MC5 LINE L1 -340 7621 7499 292 98 39 20 chr21 10389509 10389560 -24518010 + MLT1E1 LTR MaLR 153 204 -450 678 246 70 118 chr21 10389601 10389975 -24517595 - MLT-int LTR MaLR -700 1035 680 1758 143 66 0 chr21 10390652 10390924 -24516646 + AluJb SINE Alu 1 290 -22 2934 221 17 7 chr21 10390925 10391639 -24515931 - L1 LINE L1 -1497 4649 3929 3445 89 39 24 chr21 10391644 10392185 -24515385 + L1P5 LINE L1 5264 5812 -339 25 65 0 0 chr21 10392195 10392241 -24515329 + AT_rich Low_complexity Low_complexity 1 46 0 313 258 102 23 chr21 10392277 10392405 -24515165 - LTR40b LTR ERVL -17 445 308 438 266 57 0 chr21 10393040 10393164 -24514406 - FLAM_A SINE Alu -2 131 1 22 35 0 0 chr21 10393166 10393195 -24514375 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 10393226 10393247 -24514323 + AT_rich Low_complexity Low_complexity 1 21 0 910 272 24 7 chr21 10393381 10393668 -24513902 + MLT-int LTR MaLR 285 576 -1159 7417 204 25 11 chr21 10394580 10397037 -24510533 - L1PA16 LINE L1 -227 5939 3453 3433 245 52 9 chr21 10397040 10398083 -24509487 + L1PA16 LINE L1 2358 3445 -2701 690 260 31 5 chr21 10398080 10398303 -24509267 - L1ME3 LINE L1 -31 6131 5903 34 0 0 0 chr21 10399434 10399468 -24508102 + AT_rich Low_complexity Low_complexity 1 34 0 1107 231 0 74 chr21 10400185 10400497 -24507073 + AluJo SINE Alu 1 289 -13 21 36 0 0 chr21 10400858 10400886 -24506684 + AT_rich Low_complexity Low_complexity 1 28 0 496 203 8 8 chr21 10401007 10401125 -24506445 - L1MA2 LINE L1 0 6304 6187 722 173 0 0 chr21 10401126 10401253 -24506317 - L1MA2 LINE L1 -549 5751 5625 412 332 87 66 chr21 10401339 10401731 -24505839 - L1M4 LINE L1 -5633 909 510 5086 201 26 14 chr21 10403087 10404216 -24503354 - L1MC1 LINE L1 -6 6327 5186 189 0 0 0 chr21 10404650 10404671 -24502899 + (TA)n Simple_repeat Simple_repeat 1 21 0 379 311 104 39 chr21 10405362 10405378 -24502192 + L2 LINE L2 1900 1914 -1400 1755 193 51 10 chr21 10405378 10405787 -24501783 + MSTB LTR MaLR 1 426 0 379 311 104 39 chr21 10405787 10406079 -24501491 + L2 LINE L2 1914 2228 -1086 459 271 34 51 chr21 10406195 10406372 -24501198 + MLT1D LTR MaLR 1 174 -331 1672 177 119 38 chr21 10406381 10406777 -24500793 + MSTA LTR MaLR 1 428 0 8127 204 24 4 chr21 10406777 10408396 -24499174 + MSTA-int LTR MaLR 1 1651 0 1822 167 141 24 chr21 10408396 10408779 -24498791 + MSTA LTR MaLR 1 428 0 4131 142 25 2 chr21 10408813 10409455 -24498115 + L1P3 LINE L1 8 664 -5797 1755 161 17 45 chr21 10410603 10410957 -24496613 + MER2 DNA MER2_type 1 344 0 1417 246 72 0 chr21 10411380 10411713 -24495857 - MLT1A1 LTR MaLR -8 357 1 3636 217 28 28 chr21 10411759 10412268 -24495302 - L1MB1 LINE L1 -1 6167 5656 4351 25 0 0 chr21 10412268 10412780 -24494790 + L1PA3 LINE L1 5642 6153 -2 3636 217 28 28 chr21 10412780 10413272 -24494298 - L1MB1 LINE L1 -512 5656 5166 3063 59 7 53 chr21 10413989 10414445 -24493125 + L1PA8 LINE L1 5738 6172 0 2562 36 3 0 chr21 10414987 10415290 -24492280 + AluY SINE Alu 1 304 -7 22 0 0 0 chr21 10416390 10416412 -24491158 + AT_rich Low_complexity Low_complexity 1 22 0 382 291 13 25 chr21 10417143 10417301 -24490269 + (CATATA)n Simple_repeat Simple_repeat 5 160 0 260 243 7 33 chr21 10417303 10417455 -24490115 + (TATATG)n Simple_repeat Simple_repeat 1 148 0 22 0 0 0 chr21 10417992 10418014 -24489556 + AT_rich Low_complexity Low_complexity 1 22 0 274 192 26 26 chr21 10418296 10418374 -24489196 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 1983 120 0 7 chr21 10418486 10418769 -24488801 - AluSx SINE Alu -23 289 9 2294 59 0 18 chr21 10418858 10419144 -24488426 - AluY SINE Alu -30 281 1 193 324 99 0 chr21 10419145 10419216 -24488354 + MIR SINE MIR 99 176 -86 203 383 97 6 chr21 10419567 10419742 -24487828 - L2 LINE L2 -174 3139 2949 187 386 60 27 chr21 10419822 10420006 -24487564 - L2 LINE L2 -455 2859 2670 1906 190 8 0 chr21 10420462 10420820 -24486750 - L1PB4 LINE L1 -2 6154 5794 2222 41 0 4 chr21 10421723 10421990 -24485580 + AluY SINE Alu 37 302 -9 345 261 0 43 chr21 10422170 10422262 -24485308 - L2 LINE L2 -5 3308 3221 264 306 14 0 chr21 10423277 10423349 -24484221 - L2 LINE L2 0 3272 3200 198 414 18 0 chr21 10423430 10423541 -24484029 - L2 LINE L2 0 3313 3201 356 64 0 0 chr21 10423814 10423861 -24483709 + MADE1 DNA Mariner 6 52 -28 282 290 35 103 chr21 10424703 10424848 -24482722 + LTR33 LTR ERVL 36 170 -351 1203 140 122 22 chr21 10425066 10425288 -24482282 - MSTA LTR MaLR 0 428 185 355 113 0 0 chr21 10425296 10425349 -24482221 - MSTA LTR MaLR -375 53 1 1151 188 24 4 chr21 10425687 10425942 -24481628 - L1MB1 LINE L1 -1 6403 6144 3519 115 0 4 chr21 10425977 10426490 -24481080 - MER9 LTR ERVK 0 511 1 4638 252 26 19 chr21 10426501 10428691 -24478879 - L1MB1 LINE L1 -244 6160 3947 1723 169 81 47 chr21 10428711 10429154 -24478416 + LTR2B LTR ERV1 32 489 -1 4147 249 31 50 chr21 10429172 10430772 -24476798 - L1MB1 LINE L1 -2457 3925 2357 782 287 68 14 chr21 10430788 10431140 -24476430 - L1MB1 LINE L1 -4040 2344 1974 592 280 6 11 chr21 10431285 10431460 -24476110 - L1MB1 LINE L1 -5041 1262 1089 534 332 79 4 chr21 10432432 10432685 -24474885 - L1MB1 LINE L1 -5611 692 421 33 85 0 0 chr21 10432738 10432820 -24474750 + AT_rich Low_complexity Low_complexity 1 82 0 29 47 0 0 chr21 10434870 10434913 -24472657 + AT_rich Low_complexity Low_complexity 1 43 0 199 283 17 17 chr21 10435382 10435442 -24472128 - L2 LINE L2 0 3313 3254 889 243 43 30 chr21 10435479 10435808 -24471762 + Charlie1b DNA MER1_type 58 390 -133 507 233 85 11 chr21 10435827 10436016 -24471554 + Charlie1b DNA MER1_type 321 523 0 912 148 0 0 chr21 10436362 10436504 -24471066 + U4 snRNA snRNA 3 144 -1 206 121 0 0 chr21 10436520 10436553 -24471017 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 780 259 79 30 chr21 10438032 10438337 -24469233 + L2 LINE L2 2994 3313 0 25 0 0 0 chr21 10438410 10438435 -24469135 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr21 10438606 10438636 -24468934 + AT_rich Low_complexity Low_complexity 1 30 0 685 226 13 19 chr21 10438936 10439091 -24468479 - MLT1E3 LTR MaLR -49 575 422 45 16 0 16 chr21 10439527 10439549 -24468021 + AT_rich Low_complexity Low_complexity 1 22 -40 2582 100 0 0 chr21 10439549 10439910 -24467660 - L1PB1 LINE L1 -9 6142 5782 45 16 0 16 chr21 10439910 10439950 -24467620 + AT_rich Low_complexity Low_complexity 22 62 0 546 160 29 6 chr21 10439955 10440130 -24467440 + (TA)n Simple_repeat Simple_repeat 1 179 0 300 270 45 0 chr21 10440160 10440249 -24467321 + L1MC4 LINE L1 6613 6705 -1337 22 0 0 0 chr21 10440249 10440271 -24467299 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr21 10440280 10440312 -24467258 + AT_rich Low_complexity Low_complexity 1 32 0 300 50 101 29 chr21 10440329 10440468 -24467102 + (TA)n Simple_repeat Simple_repeat 2 150 0 248 117 106 0 chr21 10440480 10440574 -24466996 + (TA)n Simple_repeat Simple_repeat 1 104 0 3106 154 15 37 chr21 10440605 10440976 -24466594 - L1P5 LINE L1 -360 5791 5413 2304 80 0 3 chr21 10440976 10441287 -24466283 - AluY SINE Alu -1 310 1 1576 164 65 0 chr21 10441293 10441568 -24466002 - AluSx SINE Alu -19 293 1 3106 154 15 37 chr21 10441568 10442260 -24465310 - L1P5 LINE L1 -743 5408 4748 1266 218 42 13 chr21 10442256 10442563 -24465007 - L1P5 LINE L1 -2326 3820 3505 797 200 47 0 chr21 10442564 10442714 -24464856 - MER67C LTR ERV1 -162 548 392 950 173 37 9 chr21 10442714 10442928 -24464642 + L1MA4 LINE L1 6079 6298 -2 21 0 0 0 chr21 10444576 10444597 -24462973 + AT_rich Low_complexity Low_complexity 1 21 0 1705 212 14 3 chr21 10446319 10446663 -24460907 + MER7A DNA MER2_type 1 346 0 282 29 0 0 chr21 10446986 10447021 -24460549 + (CA)n Simple_repeat Simple_repeat 2 36 0 314 183 0 17 chr21 10447632 10447692 -24459878 + L1MC4 LINE L1 6644 6702 -1340 1803 267 22 8 chr21 10447860 10448358 -24459212 - MLT1D LTR MaLR 0 505 1 306 246 9 55 chr21 10448741 10448851 -24458719 + L1MC4 LINE L1 6158 6262 -1780 371 156 73 31 chr21 10448854 10448950 -24458620 + L1MA8 LINE L1 5976 6075 -216 2702 225 45 6 chr21 10448923 10449595 -24457975 + L1MC3 LINE L1 7073 7770 -15 24 24 0 24 chr21 10449685 10449706 -24457864 + AT_rich Low_complexity Low_complexity 1 21 -20 2575 199 49 2 chr21 10449706 10450280 -24457290 - L1MB3 LINE L1 -4 6179 5579 24 24 0 24 chr21 10450280 10450300 -24457270 + AT_rich Low_complexity Low_complexity 21 41 0 24 32 0 0 chr21 10450744 10450775 -24456795 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr21 10450917 10450942 -24456628 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr21 10451631 10451655 -24455915 + AT_rich Low_complexity Low_complexity 1 24 0 222 255 92 107 chr21 10451710 10451906 -24455664 - L2 LINE L2 -8 3305 3113 201 178 44 0 chr21 10453196 10453241 -24454329 + GA-rich Low_complexity Low_complexity 2 48 0 2046 256 45 15 chr21 10453418 10454144 -24453426 - L1MB3 LINE L1 -985 5161 4414 272 260 50 30 chr21 10454400 10454500 -24453070 + L1M4 LINE L1 3437 3538 -2608 25 0 0 0 chr21 10455178 10455203 -24452367 + AT_rich Low_complexity Low_complexity 1 25 0 2066 166 23 30 chr21 10456544 10456941 -24450629 + MER57A LTR ERV1 10 403 0 1357 224 53 3 chr21 10458582 10458886 -24448684 - LTR42 LTR ERVL -138 357 39 24 0 0 0 chr21 10459002 10459026 -24448544 + AT_rich Low_complexity Low_complexity 1 24 0 200 215 25 25 chr21 10459094 10459173 -24448397 + (TA)n Simple_repeat Simple_repeat 1 79 0 365 70 18 0 chr21 10459251 10459308 -24448262 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 214 186 10 62 chr21 10460194 10460291 -24447279 + (TAGA)n Simple_repeat Simple_repeat 2 93 0 320 329 83 44 chr21 10460456 10460708 -24446862 + L1M4c LINE L1 1183 1444 -4940 293 238 16 0 chr21 10461117 10461180 -24446390 + LTR42 LTR ERVL 295 358 -137 23 78 0 0 chr21 10461907 10461958 -24445612 + AT_rich Low_complexity Low_complexity 1 51 0 276 227 86 86 chr21 10462267 10462395 -24445175 - MIR SINE MIR -72 136 8 554 126 0 11 chr21 10463820 10463915 -24443655 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 1231 185 128 57 chr21 10463964 10464331 -24443239 + MSTD LTR MaLR 1 393 -3 1410 209 56 39 chr21 10464508 10464867 -24442703 + MLT1B LTR MaLR 14 378 -12 1374 229 8 0 chr21 10465037 10465295 -24442275 + ERVL-B1 LTR ERVL 3262 3521 -2243 839 278 0 0 chr21 10465298 10465467 -24442103 + MER70B LTR ERVL 5 173 -405 951 242 14 5 chr21 10465449 10465668 -24441902 + MER70B LTR ERVL 88 308 -270 354 155 0 0 chr21 10465728 10465786 -24441784 + MER70A LTR ERVL 415 472 0 11450 184 23 31 chr21 10465786 10468045 -24439525 + ERVL-B1 LTR ERVL 3517 5757 -7 1441 217 58 5 chr21 10468045 10468427 -24439143 + MLT2B1 LTR ERVL 1 452 -63 272 27 27 0 chr21 10468472 10468509 -24439061 + (TA)n Simple_repeat Simple_repeat 1 38 0 276 269 30 6 chr21 10468529 10468696 -24438874 + (TA)n Simple_repeat Simple_repeat 2 172 0 450 53 0 0 chr21 10468701 10468758 -24438812 + (CA)n Simple_repeat Simple_repeat 2 58 0 2309 132 8 16 chr21 10468792 10469170 -24438400 + THE1C LTR MaLR 1 375 0 9863 119 14 36 chr21 10469170 10469589 -24437981 + THE1C-int LTR MaLR 1 428 -1152 2154 75 11 7 chr21 10469589 10469869 -24437701 - AluY SINE Alu -2 309 29 9863 119 14 36 chr21 10469869 10471066 -24436504 + THE1C-int LTR MaLR 428 1580 0 2044 170 11 16 chr21 10471066 10471443 -24436127 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 10471663 10471684 -24435886 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 10472062 10472083 -24435487 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 10473502 10473540 -24434030 + AT_rich Low_complexity Low_complexity 1 38 0 844 304 36 58 chr21 10475842 10476560 -24431010 + L1M4b LINE L1 1298 1987 -4972 226 272 127 46 chr21 10476736 10476909 -24430661 + L1M4b LINE L1 2237 2423 -4534 258 211 18 61 chr21 10477227 10477341 -24430229 + A-rich Low_complexity Low_complexity 2 110 0 953 266 65 16 chr21 10477410 10477838 -24429732 + L1M4b LINE L1 2988 3436 -3521 2005 151 53 6 chr21 10478372 10478730 -24428840 + THE1C LTR MaLR 1 375 0 290 237 21 10 chr21 10478730 10478827 -24428743 + L1 LINE L1 4506 4603 -1543 616 172 9 0 chr21 10479195 10479311 -24428259 + L1PB4 LINE L1 6037 6153 -3 329 169 62 0 chr21 10479399 10479464 -24428106 + L1MA4 LINE L1 6022 6090 -210 188 299 58 11 chr21 10483599 10483686 -24423884 - MIR3 SINE MIR -6 202 112 22 35 0 0 chr21 10483891 10483920 -24423650 + AT_rich Low_complexity Low_complexity 1 29 0 34 24 0 0 chr21 10484008 10484049 -24423521 + AT_rich Low_complexity Low_complexity 1 41 0 257 218 67 121 chr21 10485555 10485720 -24421850 - MLT1H LTR MaLR -38 511 356 22 56 0 0 chr21 10487628 10487664 -24419906 + AT_rich Low_complexity Low_complexity 1 36 0 30 59 0 0 chr21 10488370 10488421 -24419149 + AT_rich Low_complexity Low_complexity 1 51 0 2274 80 0 26 chr21 10488450 10488763 -24418807 - AluSc SINE Alu -4 305 1 282 57 57 0 chr21 10489402 10489455 -24418115 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 233 89 22 0 chr21 10489490 10489535 -24418035 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 247 65 43 0 chr21 10489575 10489621 -24417949 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 25 51 0 0 chr21 10490318 10490357 -24417213 + AT_rich Low_complexity Low_complexity 1 39 0 2051 128 43 32 chr21 10490645 10490990 -24416580 + THE1B LTR MaLR 1 349 -15 32 81 0 0 chr21 10491178 10491252 -24416318 + AT_rich Low_complexity Low_complexity 1 74 0 2459 243 41 30 chr21 10493228 10493928 -24413642 + L1MD2 LINE L1 5633 6340 -19 244 274 0 0 chr21 10494237 10494288 -24413282 + MER58 DNA MER1_type 3 53 -171 21 43 0 22 chr21 10494299 10494332 -24413238 + AT_rich Low_complexity Low_complexity 1 34 -11 2368 157 0 5 chr21 10494332 10494728 -24412842 + L1PA15 LINE L1 5762 6155 -10 21 43 0 22 chr21 10494728 10494740 -24412830 + AT_rich Low_complexity Low_complexity 34 45 0 472 216 10 10 chr21 10494761 10494863 -24412707 + MER58 DNA MER1_type 2318 2419 -1 251 133 0 17 chr21 10495112 10495172 -24412398 + (CAAAAA)n Simple_repeat Simple_repeat 2 60 0 700 142 0 57 chr21 10495218 10495359 -24412211 + FLAM_C SINE Alu 1 133 0 230 150 0 50 chr21 10495827 10495841 -24411729 + (TAAAAA)n Simple_repeat Simple_repeat 1 14 -43 1193 207 70 39 chr21 10495841 10496126 -24411444 + AluJb SINE Alu 1 294 -8 230 150 0 50 chr21 10496126 10496171 -24411399 + (TAAAAA)n Simple_repeat Simple_repeat 14 57 0 413 288 25 43 chr21 10497165 10497328 -24410242 - HAL1 LINE L1 0 2507 2348 506 290 38 38 chr21 10497333 10497623 -24409947 - MER34B LTR ERV1 0 565 276 347 254 94 45 chr21 10497948 10498172 -24409398 - HAL1 LINE L1 -737 1770 1536 1081 277 71 42 chr21 10498522 10498650 -24408920 + MLT1E2 LTR MaLR 5 128 -498 2792 71 3 0 chr21 10498650 10499004 -24408566 + THE1A LTR MaLR 1 355 0 1081 277 71 42 chr21 10499004 10499349 -24408221 + MLT1E2 LTR MaLR 128 498 -128 2339 71 3 3 chr21 10499379 10499688 -24407882 - AluY SINE Alu -2 309 1 230 235 15 15 chr21 10499689 10499757 -24407813 + MLT1E2 LTR MaLR 587 654 0 24 0 0 0 chr21 10500148 10500172 -24407398 + AT_rich Low_complexity Low_complexity 1 24 0 1325 189 56 73 chr21 10500192 10500641 -24406929 - LTR56 LTR ERV1 0 445 5 721 268 71 55 chr21 10500715 10501096 -24406474 - LTR56-int LTR ERV1 -93 5030 4644 1776 163 7 7 chr21 10502042 10502343 -24405227 - AluJb SINE Alu -11 301 1 2069 135 3 3 chr21 10502366 10502677 -24404893 - AluSx SINE Alu -1 311 1 6073 61 1 15 chr21 10502966 10503773 -24403797 - L1PA6 LINE L1 -1437 4709 3914 6925 62 6 1 chr21 10503773 10505201 -24402369 + L1PA6 LINE L1 4723 6154 0 251 307 137 68 chr21 10506211 10506416 -24401154 - LTR56-int LTR ERV1 -2917 3884 3666 1722 182 0 56 chr21 10507389 10507746 -24399824 + MER1B DNA MER1_type 1 337 0 22 35 0 0 chr21 10509265 10509294 -24398276 + AT_rich Low_complexity Low_complexity 1 29 0 1511 197 45 64 chr21 10510794 10510852 -24396718 - LTR56 LTR ERV1 -24 421 363 1964 122 113 3 chr21 10510852 10511180 -24396390 - THE1B LTR MaLR 0 364 1 1511 197 45 64 chr21 10511180 10511542 -24396028 - LTR56 LTR ERV1 -82 363 9 2294 196 39 59 chr21 10513458 10513632 -24393938 + MER34 LTR ERV1 11 187 -355 234 0 0 0 chr21 10513632 10513658 -24393912 + (TC)n Simple_repeat Simple_repeat 1 26 0 2294 196 39 59 chr21 10513658 10514024 -24393546 + MER34 LTR ERV1 187 540 -2 2211 126 0 0 chr21 10514215 10514525 -24393045 - AluSq SINE Alu -3 310 1 1963 238 52 42 chr21 10515473 10515514 -24392056 - L1ME2 LINE L1 -24 6140 6101 2154 112 3 0 chr21 10515514 10515800 -24391770 - AluSg SINE Alu -21 289 3 1963 238 52 42 chr21 10515800 10516456 -24391114 - L1ME2 LINE L1 -63 6101 5436 217 307 67 0 chr21 10516694 10516769 -24390801 - MIR SINE MIR -12 250 171 739 262 73 1 chr21 10516861 10517136 -24390434 + MER2 DNA MER2_type 1 319 -25 1899 180 123 5 chr21 10517591 10517974 -24389596 + MSTA LTR MaLR 1 428 0 8822 156 6 40 chr21 10517976 10519609 -24387961 + MSTA-int LTR MaLR 3 1580 0 1663 183 146 5 chr21 10519611 10519982 -24387588 + MSTA LTR MaLR 3 425 -3 1372 253 25 40 chr21 10519986 10520460 -24387110 - MLT1C LTR MaLR 0 467 1 1140 236 42 9 chr21 10521101 10521435 -24386135 + L1ME1 LINE L1 5822 6166 0 288 243 0 0 chr21 10521728 10521802 -24385768 + (TA)n Simple_repeat Simple_repeat 2 75 0 861 31 0 0 chr21 10522498 10522596 -24384974 + AluY SINE Alu 197 294 -17 21 36 0 0 chr21 10522690 10522718 -24384852 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr21 10523717 10523740 -24383830 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 867 68 0 0 chr21 10524107 10524224 -24383346 + AluY SINE Alu 194 310 -1 676 124 5 38 chr21 10525026 10525212 -24382358 + (TA)n Simple_repeat Simple_repeat 1 180 0 218 316 38 30 chr21 10525319 10525452 -24382118 - MIR SINE MIR -64 198 65 21 82 0 0 chr21 10525618 10525667 -24381903 + AT_rich Low_complexity Low_complexity 1 49 0 2376 76 0 10 chr21 10525976 10526290 -24381280 + AluY SINE Alu 1 311 0 396 71 0 0 chr21 10526807 10526863 -24380707 + (TG)n Simple_repeat Simple_repeat 2 57 0 313 361 51 13 chr21 10527171 10527329 -24380241 - MIR SINE MIR -38 224 61 672 77 0 0 chr21 10527367 10527458 -24380112 + (CATAG)n Simple_repeat Simple_repeat 2 92 0 1289 184 65 22 chr21 10528271 10528548 -24379022 - AluJo SINE Alu -22 290 2 615 174 0 0 chr21 10529170 10529302 -24378268 - L1MA8 LINE L1 -1 6290 6159 355 329 90 32 chr21 10529763 10530040 -24377530 + MER110-int LTR ERV1 3173 3465 -3336 615 322 55 40 chr21 10530607 10530752 -24376818 + MER110-int LTR ERV1 1818 1959 -2688 1056 96 0 0 chr21 10530752 10530898 -24376672 + L1PB1 LINE L1 6005 6150 -1 615 322 55 40 chr21 10530898 10530909 -24376661 + MER110-int LTR ERV1 1959 1968 -2679 2019 82 7 14 chr21 10530909 10531175 -24376395 + AluSp SINE Alu 1 266 -47 270 0 0 0 chr21 10531175 10531205 -24376365 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2019 82 7 14 chr21 10531205 10531217 -24376353 + AluSp SINE Alu 266 277 -36 615 322 55 40 chr21 10531217 10531407 -24376163 + MER110-int LTR ERV1 1968 2170 -2477 417 97 69 0 chr21 10531609 10531681 -24375889 - MADE1 DNA Mariner -3 77 1 792 281 46 52 chr21 10531893 10533307 -24374263 + L1ME1 LINE L1 501 1927 -4153 311 304 22 0 chr21 10533331 10533423 -24374147 + (TATATG)n Simple_repeat Simple_repeat 3 96 0 13781 158 21 15 chr21 10533423 10533874 -24373696 - Tigger1 DNA MER2_type 0 2418 1972 6999 177 18 2 chr21 10533874 10536012 -24371558 + L1PA13 LINE L1 3996 6157 -6 13781 158 21 15 chr21 10536012 10537958 -24369612 - Tigger1 DNA MER2_type -446 1972 5 24 0 0 0 chr21 10537961 10537985 -24369585 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr21 10538264 10538303 -24369267 + AT_rich Low_complexity Low_complexity 1 39 0 232 306 37 9 chr21 10538569 10538677 -24368893 + L1ME1 LINE L1 2615 2725 -3355 542 248 115 54 chr21 10538682 10538996 -24368574 + L1ME1 LINE L1 2940 3272 -2808 32 95 0 0 chr21 10539020 10539115 -24368455 + AT_rich Low_complexity Low_complexity 1 95 0 310 328 6 23 chr21 10539138 10539315 -24368255 + L1ME1 LINE L1 3455 3628 -2452 987 238 71 45 chr21 10539365 10539786 -24367784 + L1ME1 LINE L1 3618 4049 -2031 409 296 17 6 chr21 10539960 10540132 -24367438 + L1ME1 LINE L1 4414 4587 -1493 2000 139 3 0 chr21 10540142 10540430 -24367140 + AluSq SINE Alu 2 290 -23 183 66 66 33 chr21 10540430 10540491 -24367079 + (TTAA)n Simple_repeat Simple_repeat 1 63 0 1382 244 53 18 chr21 10540524 10540978 -24366592 + L1ME1 LINE L1 4638 5107 -973 453 189 0 47 chr21 10540988 10541094 -24366476 - L1PB4 LINE L1 0 6156 6056 1890 243 52 75 chr21 10541108 10541406 -24366164 + L1ME1 LINE L1 5131 5434 -666 1905 106 0 0 chr21 10541406 10541660 -24365910 + AluSx SINE Alu 38 291 -21 1890 243 52 75 chr21 10541660 10542354 -24365216 + L1ME1 LINE L1 5434 6095 -5 2095 173 56 24 chr21 10543983 10544394 -24363176 - MSTB LTR MaLR -2 424 1 36 23 0 0 chr21 10545395 10545438 -24362132 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 10546072 10546094 -24361476 + AT_rich Low_complexity Low_complexity 1 22 0 252 100 0 0 chr21 10546103 10546143 -24361427 + (TA)n Simple_repeat Simple_repeat 1 40 0 226 234 0 0 chr21 10547114 10547161 -24360409 - MER58 DNA MER1_type -2168 252 206 22 70 0 0 chr21 10548720 10548763 -24358807 + AT_rich Low_complexity Low_complexity 1 43 0 717 189 79 24 chr21 10549146 10549310 -24358260 + Tigger1 DNA MER2_type 1 173 -2245 984 171 43 19 chr21 10549286 10549497 -24358073 + Tigger1 DNA MER2_type 2202 2417 -1 4446 110 35 1 chr21 10550901 10551226 -24356344 + L1PB1 LINE L1 5447 5760 -391 465 103 0 0 chr21 10551226 10551294 -24356276 + (CA)n Simple_repeat Simple_repeat 2 69 0 4446 110 35 1 chr21 10551294 10551650 -24355920 + L1PB1 LINE L1 5760 6151 0 531 0 0 0 chr21 10551895 10551954 -24355616 + (TG)n Simple_repeat Simple_repeat 2 60 0 431 280 64 32 chr21 10552334 10552491 -24355079 - LTR16C LTR ERVL -7 484 323 435 223 91 16 chr21 10553443 10553564 -24354006 - L1MA10 LINE L1 -36 6298 6169 2742 186 24 9 chr21 10553607 10554160 -24353410 - L1MB1 LINE L1 -21 6168 5608 456 151 108 0 chr21 10554277 10554370 -24353200 + L1MB2 LINE L1 6069 6171 0 1453 206 95 3 chr21 10554405 10554774 -24352796 + L1 LINE L1 4369 4771 -1375 3927 155 30 6 chr21 10555298 10556008 -24351562 - L1MA4A LINE L1 -5 6298 5572 31 44 0 0 chr21 10556723 10556768 -24350802 + AT_rich Low_complexity Low_complexity 1 45 0 30 59 0 0 chr21 10557488 10557539 -24350031 + AT_rich Low_complexity Low_complexity 1 51 0 1864 156 6 22 chr21 10557647 10557962 -24349608 - AluSx SINE Alu 0 312 3 626 289 96 41 chr21 10558575 10558918 -24348652 + L2 LINE L2 2506 2867 -447 1224 183 48 48 chr21 10559058 10559348 -24348222 - AluJo SINE Alu -22 290 1 21 0 0 0 chr21 10559512 10559533 -24348037 + AT_rich Low_complexity Low_complexity 1 21 0 1569 181 127 31 chr21 10560211 10560728 -24346842 - MLT2A2 LTR ERVL 0 554 1 30 0 0 0 chr21 10560802 10560832 -24346738 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr21 10560883 10560915 -24346655 + AT_rich Low_complexity Low_complexity 1 32 0 750 333 58 19 chr21 10561588 10561900 -24345670 + MLT1I LTR MaLR 68 391 -18 686 247 22 6 chr21 10562357 10562539 -24345031 - MER4C LTR ERV1 0 465 281 309 235 43 47 chr21 10562551 10562714 -24344856 - LTR59 LTR ERV1 -165 432 155 2451 95 0 3 chr21 10562715 10563063 -24344507 + L1PB1 LINE L1 5801 6147 -4 1072 179 20 88 chr21 10563070 10563305 -24344265 - MER4A LTR ERV1 -335 329 117 2059 90 49 0 chr21 10563305 10563593 -24343977 - AluSq SINE Alu -11 302 1 1072 179 20 88 chr21 10563593 10563654 -24343916 - MER4A LTR ERV1 -547 117 53 557 273 17 23 chr21 10563680 10563856 -24343714 + MLT1B LTR MaLR 208 382 -8 22 0 0 0 chr21 10564920 10564942 -24342628 + AT_rich Low_complexity Low_complexity 1 22 0 216 270 9 18 chr21 10565675 10565786 -24341784 + (TA)n Simple_repeat Simple_repeat 2 111 0 1279 234 13 20 chr21 10565790 10566093 -24341477 - AluJb SINE Alu -11 301 1 23 92 0 0 chr21 10566427 10566492 -24341078 + AT_rich Low_complexity Low_complexity 1 65 0 1640 150 75 33 chr21 10566857 10567217 -24340353 + THE1C LTR MaLR 1 375 0 9030 142 23 35 chr21 10567218 10568813 -24338757 + THE1C-int LTR MaLR 2 1576 -4 1948 127 61 25 chr21 10568817 10569179 -24338391 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 10569648 10569669 -24337901 + AT_rich Low_complexity Low_complexity 1 21 0 42 36 0 0 chr21 10569728 10569784 -24337786 + AT_rich Low_complexity Low_complexity 1 56 0 1949 165 125 5 chr21 10570981 10571356 -24336214 - MSTA LTR MaLR 0 428 9 7226 180 36 7 chr21 10571365 10572882 -24334688 - MSTA-int LTR MaLR 0 1580 1 1867 139 142 18 chr21 10572882 10573263 -24334307 - MSTA LTR MaLR 0 428 1 2619 177 10 29 chr21 10574229 10574748 -24332822 - MER41B LTR ERV1 -13 622 114 298 267 30 10 chr21 10575104 10575205 -24332365 + MER50-int LTR ERV1 5488 5590 -3388 1613 178 4 4 chr21 10576435 10576743 -24330827 + AluSx SINE Alu 5 312 0 1122 305 44 33 chr21 10577857 10578225 -24329345 + MER50-int LTR ERV1 4214 4527 -344 2196 101 0 17 chr21 10578225 10578523 -24329047 + AluSq SINE Alu 1 293 -20 1122 305 44 33 chr21 10578523 10578741 -24328829 + MER50-int LTR ERV1 4527 4741 -130 207 0 0 0 chr21 10578841 10578864 -24328706 + (A)n Simple_repeat Simple_repeat 1 23 0 1251 210 70 48 chr21 10580685 10581042 -24326528 + MLT1A1 LTR MaLR 1 365 0 2212 117 0 0 chr21 10581450 10581759 -24325811 + AluSx SINE Alu 1 309 -3 197 356 34 0 chr21 10581848 10581907 -24325663 - L2 LINE L2 -49 3223 3163 1254 272 41 39 chr21 10582143 10582680 -24324890 - L1ME1 LINE L1 -31 6135 5598 1542 181 98 12 chr21 10582685 10582833 -24324737 - MLT1A1 LTR MaLR 0 365 231 3298 143 82 51 chr21 10582833 10583503 -24324067 - LTR8 LTR ERV1 0 691 1 1542 181 98 12 chr21 10583503 10583690 -24323880 - MLT1A1 LTR MaLR -134 231 1 4330 223 60 10 chr21 10583704 10584953 -24322617 - L1MC1 LINE L1 -8 6325 5013 375 266 174 16 chr21 10584937 10585121 -24322449 - L1ME1 LINE L1 -562 5604 5392 2371 78 0 0 chr21 10585181 10585476 -24322094 - AluY SINE Alu -16 295 1 2456 229 37 18 chr21 10586239 10586393 -24321177 + MER50 LTR ERV1 106 256 -478 2171 76 45 7 chr21 10586393 10586682 -24320888 + AluY SINE Alu 1 300 -11 2456 229 37 18 chr21 10586682 10587143 -24320427 + MER50 LTR ERV1 256 733 -1 2731 179 37 52 chr21 10587390 10587986 -24319584 - MER67C LTR ERV1 -97 613 27 3389 107 2 9 chr21 10588170 10588694 -24318876 - L1PA13 LINE L1 0 6163 5644 288 327 83 30 chr21 10589143 10589311 -24318259 + MIR SINE MIR 49 225 -37 1432 222 34 47 chr21 10589945 10590332 -24317238 + MLT1B LTR MaLR 1 382 -8 844 150 27 0 chr21 10590801 10590948 -24316622 + MER67D LTR ERV1 16 166 -348 5695 62 28 36 chr21 10590955 10591741 -24315829 - LTR17 LTR ERV1 0 780 1 609 238 149 0 chr21 10591744 10591912 -24315658 + MER67D LTR ERV1 313 505 -9 2826 19 0 0 chr21 10592384 10592702 -24314868 - AluYb8 SINE Alu 0 318 1 32 57 0 0 chr21 10593803 10593856 -24313714 + AT_rich Low_complexity Low_complexity 1 53 0 1177 79 30 0 chr21 10594211 10594375 -24313195 + L1PA13 LINE L1 5992 6160 -3 2946 130 2 15 chr21 10594580 10595043 -24312527 + LTR22A LTR ERVK 2 458 0 694 284 26 68 chr21 10595058 10595368 -24312202 + MLT1H LTR MaLR 10 306 -243 21 36 0 0 chr21 10595962 10595990 -24311580 + AT_rich Low_complexity Low_complexity 1 28 0 354 215 13 0 chr21 10596453 10596532 -24311038 + MLT1H LTR MaLR 488 567 0 477 259 63 19 chr21 10597056 10597371 -24310199 - L1MC/D LINE L1 -568 5598 5400 842 260 66 33 chr21 10597376 10597799 -24309771 - L1MC/D LINE L1 -768 5378 4942 1146 281 60 54 chr21 10597959 10598911 -24308659 - L1MC/D LINE L1 -1280 4866 3909 595 335 32 29 chr21 10598954 10599330 -24308240 - L1MC/D LINE L1 -2249 3897 3521 513 92 0 0 chr21 10599330 10599406 -24308164 + (TG)n Simple_repeat Simple_repeat 2 77 0 590 287 88 9 chr21 10599945 10600401 -24307169 - L1MC/D LINE L1 -3317 2829 2334 1504 214 0 25 chr21 10601014 10601332 -24306238 - AluJb SINE Alu -2 310 1 30 0 0 0 chr21 10601537 10601567 -24306003 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 10601748 10601770 -24305800 + AT_rich Low_complexity Low_complexity 1 22 0 1532 133 33 36 chr21 10601896 10602197 -24305373 - THE1C LTR MaLR -75 300 1 2572 227 58 28 chr21 10602197 10602450 -24305120 - L1MB1 LINE L1 -239 5929 5685 4366 62 5 28 chr21 10602450 10603050 -24304520 - L1PA8 LINE L1 -2 6170 5585 2572 227 58 28 chr21 10603050 10604168 -24303402 - L1MB1 LINE L1 -483 5685 4517 281 196 54 0 chr21 10604255 10604311 -24303259 - THE1C-int LTR MaLR -409 1171 1113 862 185 127 21 chr21 10604326 10604515 -24303055 + THE1-int LTR MaLR 963 1171 -409 1294 238 36 9 chr21 10604602 10604938 -24302632 + L1 LINE L1 4517 4861 -1285 3633 211 57 38 chr21 10604936 10605662 -24301908 - THE1C-int LTR MaLR -617 963 213 2131 156 55 57 chr21 10605662 10606155 -24301415 + LTR22B LTR ERVK 1 492 0 3633 211 57 38 chr21 10606155 10606370 -24301200 - THE1C-int LTR MaLR -1367 213 4 1017 159 57 74 chr21 10606373 10606652 -24300918 - THE1C LTR MaLR 0 375 121 2242 231 43 13 chr21 10606652 10607284 -24300286 + L1 LINE L1 3332 3982 -2164 1165 244 47 17 chr21 10608280 10608682 -24298888 + Charlie1b DNA MER1_type 50 463 -60 21 0 0 0 chr21 10608688 10608709 -24298861 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr21 10608766 10608798 -24298772 + AT_rich Low_complexity Low_complexity 1 32 0 2123 121 7 3 chr21 10609106 10609412 -24298158 + AluSq SINE Alu 1 307 -6 2315 285 58 46 chr21 10610029 10611245 -24296325 + L1ME2 LINE L1 32 1194 -4851 1789 197 12 44 chr21 10611247 10611658 -24295912 + MLT2C2 LTR ERVL 12 409 -55 291 54 0 0 chr21 10611684 10611721 -24295849 + (TAGG)n Simple_repeat Simple_repeat 1 37 0 935 246 71 38 chr21 10611775 10612507 -24295063 + L1ME2 LINE L1 1293 2137 -4427 1073 261 57 34 chr21 10612527 10613390 -24294180 + L1ME2 LINE L1 2199 3078 -3486 214 179 0 0 chr21 10613427 10613466 -24294104 + (AATAG)n Simple_repeat Simple_repeat 2 40 0 662 275 28 14 chr21 10613466 10613677 -24293893 + L1MC3 LINE L1 7056 7269 -516 8605 245 35 17 chr21 10613764 10614662 -24292908 + L1ME2 LINE L1 3168 4049 -2552 203 0 0 36 chr21 10614662 10614690 -24292880 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8605 245 35 17 chr21 10614690 10615245 -24292325 + L1ME2 LINE L1 4049 4593 -2008 2676 39 0 0 chr21 10615245 10615556 -24292014 + AluY SINE Alu 1 311 0 8605 245 35 17 chr21 10615556 10616730 -24290840 + L1ME2 LINE L1 4593 5837 -764 1462 136 4 9 chr21 10616947 10617175 -24290395 - AluSg/x SINE Alu 0 310 84 390 21 0 0 chr21 10617223 10617270 -24290300 + (TG)n Simple_repeat Simple_repeat 2 48 0 21 0 0 0 chr21 10617574 10617595 -24289975 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 10617695 10617729 -24289841 + AT_rich Low_complexity Low_complexity 1 34 0 1927 185 48 30 chr21 10619207 10619750 -24287820 + MLT2A2 LTR ERVL 2 554 0 2397 112 0 3 chr21 10619754 10620102 -24287468 + THE1-int LTR MaLR 6 352 -1228 400 254 24 48 chr21 10620222 10620306 -24287264 - AluJo SINE Alu -100 202 120 180 0 0 0 chr21 10620306 10620326 -24287244 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 400 254 24 48 chr21 10620326 10620367 -24287203 - AluJo SINE Alu -182 120 80 622 328 56 3 chr21 10620754 10621056 -24286514 + L1ME2 LINE L1 5846 6163 -2250 434 256 58 31 chr21 10621069 10621260 -24286310 + L1ME2 LINE L1 6208 6403 -179 933 304 56 20 chr21 10621459 10621907 -24285663 + L1M4 LINE L1 4702 5165 -981 638 62 57 34 chr21 10621978 10622154 -24285416 + (TA)n Simple_repeat Simple_repeat 1 180 0 1973 120 17 3 chr21 10622158 10622450 -24285120 + AluSg SINE Alu 1 296 -14 1800 82 0 50 chr21 10622450 10622732 -24284838 + L1PA8 LINE L1 5905 6172 0 4123 242 62 22 chr21 10622781 10626091 -24281479 + L1MC3 LINE L1 4255 7785 0 1805 45 0 0 chr21 10626886 10627107 -24280463 + L1PA4 LINE L1 5932 6152 -3 2229 116 68 3 chr21 10627410 10627764 -24279806 + MER51B LTR ERV1 1 377 0 10451 125 131 90 chr21 10627764 10628792 -24278778 + MER51B-int LTR ERV1 1 985 -6831 2149 80 3 89 chr21 10628792 10629119 -24278451 + AluSp SINE Alu 1 299 -14 10451 125 131 90 chr21 10629119 10631247 -24276323 + MER51B-int LTR ERV1 985 3327 -4489 1861 200 58 28 chr21 10631219 10631688 -24275882 + MER51B-int LTR ERV1 1474 1956 -3261 559 102 2 19 chr21 10631685 10631788 -24275782 + MER51B-int LTR ERV1 2216 5034 -2384 1770 125 62 3 chr21 10631783 10632071 -24275499 + MER51B-int LTR ERV1 2341 2645 -2572 605 130 10 0 chr21 10632070 10632170 -24275400 + MER51B-int LTR ERV1 5249 5349 -2188 8822 147 59 38 chr21 10632160 10633529 -24274041 + MER51B-int LTR ERV1 5620 6958 -858 2075 126 0 19 chr21 10633529 10633838 -24273732 - AluY SINE Alu -8 303 1 8822 147 59 38 chr21 10633838 10633907 -24273663 + MER51B-int LTR ERV1 6958 7024 -792 240 35 0 0 chr21 10633907 10633936 -24273634 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 8822 147 59 38 chr21 10633936 10634351 -24273219 + MER51B-int LTR ERV1 7024 7815 -1 2443 103 50 6 chr21 10634362 10634722 -24272848 + MER51B LTR ERV1 2 377 0 180 294 70 75 chr21 10636090 10636291 -24271279 - L2 LINE L2 -2 3311 3112 461 143 88 11 chr21 10636574 10636665 -24270905 + MER4A LTR ERV1 1 98 -566 1778 128 11 70 chr21 10636665 10637032 -24270538 + MER4A LTR ERV1 261 664 0 2275 112 0 0 chr21 10637162 10637473 -24270097 - AluSx SINE Alu -1 311 1 2080 121 10 0 chr21 10638058 10638363 -24269207 + AluY SINE Alu 1 308 -3 531 285 94 47 chr21 10638370 10638689 -24268881 - L2 LINE L2 -1250 2064 1731 495 0 0 0 chr21 10640950 10641005 -24266565 + (TTCC)n Simple_repeat Simple_repeat 4 58 0 203 169 56 0 chr21 10641231 10641302 -24266268 + (TA)n Simple_repeat Simple_repeat 2 76 0 33 73 0 0 chr21 10641302 10641370 -24266200 + AT_rich Low_complexity Low_complexity 1 68 0 4234 153 41 9 chr21 10642006 10642803 -24264767 - L1MA4 LINE L1 -3 6297 5475 3257 175 39 0 chr21 10642809 10643472 -24264098 - L1MA4 LINE L1 -997 5149 4461 706 167 0 58 chr21 10643482 10643638 -24263932 - L1MA8 LINE L1 -18 6273 6127 1715 150 33 15 chr21 10643917 10644190 -24263380 + AluSx SINE Alu 11 288 -24 26 30 0 0 chr21 10644866 10644899 -24262671 + AT_rich Low_complexity Low_complexity 1 33 0 24 32 0 0 chr21 10645105 10645136 -24262434 + AT_rich Low_complexity Low_complexity 1 31 0 544 126 11 11 chr21 10645136 10645231 -24262339 - L1MA3 LINE L1 -43 6262 6168 2313 107 52 14 chr21 10645319 10645666 -24261904 + THE1B LTR MaLR 1 360 -4 28 0 0 0 chr21 10645672 10645700 -24261870 + AT_rich Low_complexity Low_complexity 1 28 0 2303 125 35 35 chr21 10646351 10646775 -24260795 - L1MA2 LINE L1 0 6304 5881 30 27 0 0 chr21 10648127 10648164 -24259406 + AT_rich Low_complexity Low_complexity 1 37 0 1600 238 30 22 chr21 10648495 10648986 -24258584 - L1M4 LINE L1 -812 5334 4840 27 81 0 0 chr21 10649048 10649110 -24258460 + AT_rich Low_complexity Low_complexity 1 62 0 1119 292 58 28 chr21 10649227 10649880 -24257690 - L1M4 LINE L1 -1977 4169 3497 22 35 0 0 chr21 10650144 10650173 -24257397 + AT_rich Low_complexity Low_complexity 1 29 0 445 256 90 0 chr21 10650188 10650344 -24257226 - L1M4 LINE L1 -2963 3183 3014 1640 212 16 11 chr21 10650543 10650906 -24256664 + MLT1A1 LTR MaLR 1 365 0 539 299 42 6 chr21 10650948 10651115 -24256455 - MER58C DNA MER1_type -41 174 2 205 200 0 22 chr21 10651201 10651246 -24256324 + (CATATA)n Simple_repeat Simple_repeat 4 47 0 271 218 11 11 chr21 10651284 10651371 -24256199 + (TA)n Simple_repeat Simple_repeat 1 87 0 294 211 26 35 chr21 10651390 10651504 -24256066 + (TA)n Simple_repeat Simple_repeat 1 113 0 539 345 24 0 chr21 10651585 10651791 -24255779 + MER58C DNA MER1_type 2 212 -3 29 0 0 0 chr21 10651801 10651830 -24255740 + AT_rich Low_complexity Low_complexity 1 29 0 247 111 0 93 chr21 10651910 10651964 -24255606 - L1PA8 LINE L1 -5 6163 6115 2108 109 3 3 chr21 10652034 10652328 -24255242 + AluSq SINE Alu 1 294 -19 219 103 0 0 chr21 10652367 10652406 -24255164 + (GA)n Simple_repeat Simple_repeat 2 40 0 1336 211 53 41 chr21 10652568 10652910 -24254660 - MLT1A1 LTR MaLR 0 365 20 348 232 49 12 chr21 10652926 10653008 -24254562 + MER58A DNA MER1_type 46 130 0 234 319 71 18 chr21 10653104 10653217 -24254353 + MLT1F LTR MaLR 256 374 -168 215 135 39 19 chr21 10653263 10653315 -24254255 + (TA)n Simple_repeat Simple_repeat 1 53 0 297 0 0 0 chr21 10653317 10653350 -24254220 + (CA)n Simple_repeat Simple_repeat 2 34 0 2782 93 23 5 chr21 10653350 10653746 -24253824 - MLT2A1 LTR ERVL -41 403 1 257 244 70 12 chr21 10653869 10653955 -24253615 + MLT1A1-int LTR MaLR 2 92 -1643 1414 234 28 17 chr21 10655009 10655175 -24252395 + MLT1A1 LTR MaLR 1 164 -201 204 67 0 0 chr21 10655175 10655205 -24252365 + (TCTCTG)n Simple_repeat Simple_repeat 6 35 0 1414 234 28 17 chr21 10655205 10655397 -24252173 + MLT1A1 LTR MaLR 164 363 -2 1850 146 29 47 chr21 10656255 10656597 -24250973 - MER1B DNA MER1_type 0 337 2 332 311 72 21 chr21 10657545 10657739 -24249831 - MIR SINE MIR -21 241 40 2117 110 3 3 chr21 10658088 10658397 -24249173 + AluSc SINE Alu 1 309 0 456 163 39 0 chr21 10658584 10658737 -24248833 + (TA)n Simple_repeat Simple_repeat 2 160 0 181 172 31 0 chr21 10658760 10658824 -24248746 + (TA)n Simple_repeat Simple_repeat 1 66 0 2226 91 7 0 chr21 10659180 10659478 -24248092 + AluSp SINE Alu 1 300 -13 232 268 27 27 chr21 10659801 10659913 -24247657 + L1ME3A LINE L1 4229 4340 -1806 25 0 0 0 chr21 10660026 10660051 -24247519 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr21 10660854 10660891 -24246679 + AT_rich Low_complexity Low_complexity 1 37 0 236 301 39 0 chr21 10660997 10661100 -24246470 + L1ME3A LINE L1 5643 5749 -413 421 306 38 11 chr21 10661210 10661393 -24246177 + L1ME3A LINE L1 5769 5956 -214 21 0 0 0 chr21 10662030 10662051 -24245519 + AT_rich Low_complexity Low_complexity 1 21 0 1853 132 47 3 chr21 10662289 10662585 -24244985 - AluSc SINE Alu 0 309 1 3440 134 24 84 chr21 10662587 10663012 -24244558 - L1PA16 LINE L1 -6 6160 5711 200 33 0 33 chr21 10663012 10663042 -24244528 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1961 132 0 14 chr21 10663042 10663331 -24244239 - AluSq SINE Alu -28 285 1 3440 134 24 84 chr21 10663331 10663643 -24243927 - L1PA16 LINE L1 -453 5713 5466 25 31 0 0 chr21 10664532 10664564 -24243006 + AT_rich Low_complexity Low_complexity 1 32 0 926 198 0 0 chr21 10664650 10664812 -24242758 + AluJb SINE Alu 134 295 -17 23 33 0 0 chr21 10665206 10665236 -24242334 + AT_rich Low_complexity Low_complexity 1 30 0 676 162 59 37 chr21 10665448 10665546 -24242024 - LTR64 LTR ERVK 0 558 455 3942 107 0 0 chr21 10665546 10666100 -24241470 - MER41A LTR ERV1 0 554 1 676 162 59 37 chr21 10666100 10666137 -24241433 - LTR64 LTR ERVK -103 455 420 1985 142 0 0 chr21 10670629 10670925 -24236645 - AluSx SINE Alu -16 296 1 396 295 0 0 chr21 10670937 10671076 -24236494 + L1MEc LINE L1 1918 2056 -4340 966 134 0 55 chr21 10671079 10671243 -24236327 - AluSq SINE Alu -158 155 1 680 223 8 0 chr21 10671444 10671604 -24235966 + FLAM_A SINE Alu 1 161 0 1166 167 0 85 chr21 10671614 10671860 -24235710 + AluJb SINE Alu 43 267 -45 417 325 101 37 chr21 10672474 10672822 -24234748 - ERVL LTR ERVL -629 5135 4766 442 333 77 15 chr21 10673076 10673271 -24234299 - ERVL LTR ERVL -1309 4455 4249 1018 303 40 16 chr21 10673851 10674224 -24233346 - LTR40a LTR ERVL -2 517 136 2274 99 0 13 chr21 10674282 10674594 -24232976 - AluY SINE Alu -3 308 1 693 314 43 21 chr21 10674594 10674970 -24232600 + L1ME LINE L1 5262 5645 -521 23 33 0 0 chr21 10675068 10675098 -24232472 + AT_rich Low_complexity Low_complexity 1 30 0 183 139 0 0 chr21 10675116 10675152 -24232418 + (GA)n Simple_repeat Simple_repeat 2 37 0 297 342 0 0 chr21 10675156 10675232 -24232338 + MER5B DNA MER1_type 50 125 -53 349 268 98 0 chr21 10675535 10675647 -24231923 - L1MC4 LINE L1 -1305 6737 6615 2179 98 3 0 chr21 10675647 10675933 -24231637 - AluSq SINE Alu -26 287 1 25 0 0 0 chr21 10676054 10676079 -24231491 + AT_rich Low_complexity Low_complexity 1 25 0 388 251 75 37 chr21 10678262 10678449 -24229121 - MLT1J2 LTR MaLR -215 235 42 6883 65 2 0 chr21 10678528 10679754 -24227816 - L1PA7 LINE L1 -5 6149 4922 289 240 58 29 chr21 10680010 10680114 -24227456 - L2 LINE L2 -1325 1989 1883 229 385 55 27 chr21 10680160 10680417 -24227153 - L2 LINE L2 -1543 1771 1508 278 265 68 0 chr21 10680508 10680625 -24226945 - L2 LINE L2 -2399 915 791 40 49 0 0 chr21 10681328 10681389 -24226181 + AT_rich Low_complexity Low_complexity 1 61 0 2258 112 0 0 chr21 10682157 10682468 -24225102 - AluSq SINE Alu -2 311 1 285 169 36 24 chr21 10682662 10682745 -24224825 + CT-rich Low_complexity Low_complexity 2 85 0 1284 78 0 0 chr21 10682746 10683043 -24224527 + (TTCC)n Simple_repeat Simple_repeat 1 297 0 23 54 0 0 chr21 10683183 10683220 -24224350 + AT_rich Low_complexity Low_complexity 1 37 0 727 160 26 19 chr21 10683222 10683378 -24224192 + L1MA8 LINE L1 6133 6289 -2 399 297 55 62 chr21 10683466 10683739 -24223831 - L1ME LINE L1 -393 5777 5507 559 350 72 25 chr21 10684494 10684897 -24222673 + L2 LINE L2 1614 2035 -1279 248 53 26 0 chr21 10685051 10685089 -24222481 + (CA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr21 10687789 10687811 -24219759 + (TA)n Simple_repeat Simple_repeat 1 22 0 234 0 0 0 chr21 10687810 10687836 -24219734 + (GA)n Simple_repeat Simple_repeat 2 27 0 212 232 24 12 chr21 10687836 10687918 -24219652 + (TA)n Simple_repeat Simple_repeat 2 84 0 250 150 17 17 chr21 10688360 10688420 -24219150 + (TA)n Simple_repeat Simple_repeat 1 60 0 2514 223 10 6 chr21 10688423 10688921 -24218649 - MLT2B1 LTR ERVL -20 500 1 201 366 69 15 chr21 10688929 10689060 -24218510 + L2 LINE L2 2505 2642 -672 2080 167 35 48 chr21 10689434 10689991 -24217579 + MLT2A2 LTR ERVL 1 554 0 490 370 45 19 chr21 10690761 10691377 -24216193 + HAL1 LINE L1 419 1050 -1457 472 301 29 8 chr21 10691425 10691664 -24215906 + HAL1 LINE L1 1944 2187 -320 237 172 17 0 chr21 10691772 10691830 -24215740 + (TA)n Simple_repeat Simple_repeat 1 59 0 2056 110 7 0 chr21 10691831 10692112 -24215458 - AluSc SINE Alu -26 283 1 2462 46 0 3 chr21 10692508 10692811 -24214759 - AluY SINE Alu -9 302 1 189 171 0 0 chr21 10693523 10693558 -24214012 + (TA)n Simple_repeat Simple_repeat 1 35 0 3840 178 30 24 chr21 10693562 10693858 -24213712 - L1PB4 LINE L1 -13 6143 5850 182 36 0 36 chr21 10693858 10693886 -24213684 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1652 178 0 14 chr21 10693889 10694175 -24213395 - AluJo SINE Alu -30 282 1 3840 178 30 24 chr21 10694175 10694700 -24212870 - L1PB4 LINE L1 -307 5849 5313 1878 176 39 25 chr21 10694700 10695076 -24212494 - MER1B DNA MER1_type 0 339 1 3576 221 23 13 chr21 10695078 10695986 -24211584 - L1PB4 LINE L1 -828 5318 4402 2025 140 0 3 chr21 10696054 10696354 -24211216 - AluSx SINE Alu -13 299 1 1591 212 42 6 chr21 10696376 10696729 -24210841 - L1PB4 LINE L1 -1765 4381 4016 662 314 17 16 chr21 10696718 10696997 -24210573 - L1M2 LINE L1 -6568 281 2 225 256 81 12 chr21 10697359 10697445 -24210125 + HAL1 LINE L1 1197 1288 -1219 1935 97 0 19 chr21 10697448 10697717 -24209853 + AluSg SINE Alu 1 264 -46 249 341 71 28 chr21 10698924 10699106 -24208464 + HAL1 LINE L1 1559 1748 -759 493 110 122 0 chr21 10699324 10699406 -24208164 - AluSg1 SINE Alu -178 131 40 1074 152 0 0 chr21 10699406 10699583 -24207987 + AluSg/x SINE Alu 127 303 -7 314 325 25 45 chr21 10699705 10699862 -24207708 + L1MDb LINE L1 26 179 -6230 699 307 66 24 chr21 10700854 10701186 -24206384 + L1MDb LINE L1 650 995 -5414 1607 238 55 50 chr21 10701210 10701852 -24205718 + L1MDb LINE L1 1066 1710 -4696 23 0 0 0 chr21 10702048 10702071 -24205499 + AT_rich Low_complexity Low_complexity 1 23 0 1889 178 0 24 chr21 10702349 10702664 -24204906 + L1MC1 LINE L1 5272 5578 -755 2657 84 19 14 chr21 10702664 10703035 -24204535 + THE1C LTR MaLR 3 375 0 1889 178 0 24 chr21 10703035 10703089 -24204481 + L1MC1 LINE L1 5578 5632 -701 3032 156 15 42 chr21 10703094 10703256 -24204314 + L1MC1 LINE L1 5730 5895 -438 2426 58 0 0 chr21 10703256 10703550 -24204020 + AluY SINE Alu 1 294 -17 3032 156 15 42 chr21 10703550 10703990 -24203580 + L1MC1 LINE L1 5895 6316 -17 1847 265 61 19 chr21 10704062 10704824 -24202746 + L1MD1 LINE L1 5274 6081 -161 194 208 0 75 chr21 10704854 10704907 -24202663 + L2 LINE L2 3256 3304 -9 201 138 0 0 chr21 10705320 10705349 -24202221 + (CATA)n Simple_repeat Simple_repeat 2 30 0 24 32 0 0 chr21 10705393 10705424 -24202146 + AT_rich Low_complexity Low_complexity 1 31 0 1465 221 63 23 chr21 10705628 10706022 -24201548 + MLT2D LTR ERVL 1 410 -4 689 293 21 25 chr21 10707027 10707266 -24200304 + MIR SINE MIR 1 238 -24 27 49 0 0 chr21 10707296 10707337 -24200233 + AT_rich Low_complexity Low_complexity 1 41 0 6527 210 18 13 chr21 10708005 10709307 -24198263 + L1 LINE L1 11 1319 -6246 1043 69 0 0 chr21 10709346 10709477 -24198093 + L1PA10 LINE L1 6024 6154 -14 4886 228 28 12 chr21 10709489 10711103 -24196467 + L1 LINE L1 4157 5810 -1755 1211 235 34 34 chr21 10711648 10711741 -24195829 + MLT1A2 LTR MaLR 4 96 -278 12219 166 42 10 chr21 10711741 10712355 -24195215 + Tigger1 DNA MER2_type 1 594 -1824 2247 107 3 0 chr21 10712355 10712664 -24194906 + AluSg SINE Alu 1 310 0 12219 166 42 10 chr21 10712664 10714392 -24193178 + Tigger1 DNA MER2_type 594 2418 0 1211 235 34 34 chr21 10714392 10714621 -24192949 + MLT1A2 LTR MaLR 95 326 -48 261 0 0 0 chr21 10714621 10714650 -24192920 + (A)n Simple_repeat Simple_repeat 1 29 0 344 308 88 44 chr21 10714683 10714910 -24192660 - L1MDb LINE L1 -4987 1422 1186 5741 117 30 0 chr21 10714911 10715906 -24191664 - L1PA10 LINE L1 -5 6163 5150 2259 157 0 0 chr21 10716021 10716397 -24191173 + L1P LINE L1 4656 5031 -1115 2181 109 0 31 chr21 10716426 10716746 -24190824 - AluSg SINE Alu 0 310 1 2030 159 19 3 chr21 10717885 10718257 -24189313 - L1MA4 LINE L1 -19 6281 5904 235 288 0 0 chr21 10718270 10718329 -24189241 + MER112 DNA MER1_type 191 249 -11 619 193 85 0 chr21 10718588 10718764 -24188806 - L1MA8 LINE L1 0 6291 6101 1725 146 0 15 chr21 10720573 10720886 -24186684 + AluSx SINE Alu 14 322 0 25 95 0 0 chr21 10721701 10721775 -24185795 + AT_rich Low_complexity Low_complexity 1 74 0 24 67 0 0 chr21 10721785 10721830 -24185740 + AT_rich Low_complexity Low_complexity 1 45 0 4067 189 34 39 chr21 10721844 10722702 -24184868 + L1MB3 LINE L1 5195 6056 -127 2037 122 0 10 chr21 10722702 10722997 -24184573 + AluSx SINE Alu 1 292 -20 4067 189 34 39 chr21 10722997 10723122 -24184448 + L1MB3 LINE L1 6056 6180 -3 568 214 173 6 chr21 10723131 10723166 -24184404 + AluJb SINE Alu 86 114 -198 189 0 0 0 chr21 10723166 10723187 -24184383 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 568 214 173 6 chr21 10723187 10723319 -24184251 + AluJb SINE Alu 114 281 -31 306 0 0 0 chr21 10723319 10723353 -24184217 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr21 10723947 10723969 -24183601 + AT_rich Low_complexity Low_complexity 1 22 0 216 220 20 0 chr21 10724143 10724193 -24183377 + (TATG)n Simple_repeat Simple_repeat 3 53 0 21 71 0 0 chr21 10724236 10724278 -24183292 + AT_rich Low_complexity Low_complexity 1 42 0 28371 107 9 13 chr21 10724345 10730802 -24176768 + L1PA7 LINE L1 8 6465 -4 2089 135 0 0 chr21 10730895 10731192 -24176378 - AluSc SINE Alu -12 297 1 27 29 0 0 chr21 10731204 10731238 -24176332 + AT_rich Low_complexity Low_complexity 1 34 0 33 66 0 0 chr21 10731277 10731338 -24176232 + AT_rich Low_complexity Low_complexity 1 61 0 1643 166 3 45 chr21 10731417 10731731 -24175839 - AluJb SINE Alu -11 301 1 2234 97 3 0 chr21 10735230 10735529 -24172041 - AluSp SINE Alu -13 300 1 203 184 0 0 chr21 10735547 10735585 -24171985 + (TTATA)n Simple_repeat Simple_repeat 1 38 0 227 376 0 0 chr21 10736211 10736304 -24171266 - L2 LINE L2 -9 3263 3171 318 347 138 33 chr21 10736578 10737004 -24170566 - L2 LINE L2 -469 2845 2375 26 30 0 0 chr21 10737304 10737337 -24170233 + AT_rich Low_complexity Low_complexity 1 33 0 1992 125 4 0 chr21 10737804 10738085 -24169485 - AluSx SINE Alu -22 290 9 5263 196 26 21 chr21 10738837 10740984 -24166586 - L1PA16 LINE L1 -8 6158 4005 186 43 0 0 chr21 10741553 10741576 -24165994 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2184 109 0 3 chr21 10741852 10742156 -24165414 + AluSc SINE Alu 1 303 -6 2244 94 0 3 chr21 10742489 10742788 -24164782 + AluSq SINE Alu 1 298 -15 40 37 0 0 chr21 10744227 10744281 -24163289 + AT_rich Low_complexity Low_complexity 1 54 0 226 260 39 10 chr21 10744749 10744853 -24162717 + (CATATA)n Simple_repeat Simple_repeat 3 109 0 1830 179 0 0 chr21 10745116 10745428 -24162142 - AluJb SINE Alu 0 312 1 2013 112 0 18 chr21 10745665 10745974 -24161596 - AluSg SINE Alu 0 304 1 22 56 0 0 chr21 10746185 10746221 -24161349 + AT_rich Low_complexity Low_complexity 1 36 0 777 291 64 8 chr21 10746274 10746631 -24160939 - MER34B LTR ERV1 -6 559 183 262 130 0 37 chr21 10746730 10746784 -24160786 - LTR49 LTR ERV1 -543 52 1 591 249 24 28 chr21 10747868 10748042 -24159528 + MER61D LTR ERV1 234 491 -10 25 83 0 0 chr21 10748418 10748478 -24159092 + AT_rich Low_complexity Low_complexity 1 60 0 202 283 17 0 chr21 10749205 10749265 -24158305 + GA-rich Low_complexity Low_complexity 1 61 0 1774 141 17 0 chr21 10749420 10749711 -24157859 + AluSg SINE Alu 1 296 -14 21 112 0 0 chr21 10750768 10750866 -24156704 + AT_rich Low_complexity Low_complexity 1 98 0 1451 88 0 21 chr21 10750895 10751088 -24156482 - AluSg SINE Alu -106 204 16 7852 114 42 7 chr21 10751090 10752267 -24155303 + MER61A-int LTR ERV1 4000 5217 0 1586 208 14 26 chr21 10752267 10752614 -24154956 + MER61A LTR ERV1 1 343 0 330 241 53 38 chr21 10753559 10753692 -24153878 + L1MEc LINE L1 1960 2094 -4302 3921 162 42 19 chr21 10753822 10753874 -24153696 + L1PB4 LINE L1 5393 5442 -714 2154 115 10 13 chr21 10753874 10754179 -24153391 + AluSg SINE Alu 1 304 -6 3921 162 42 19 chr21 10754179 10754872 -24152698 + L1PB4 LINE L1 5442 6155 -1 24 0 0 0 chr21 10754872 10754896 -24152674 + AT_rich Low_complexity Low_complexity 1 24 0 564 259 7 0 chr21 10755279 10755426 -24152144 - Tigger6 DNA MER2_type -1198 399 252 1743 240 50 26 chr21 10755737 10756311 -24151259 - Tigger6a DNA MER2_type -244 839 252 1420 220 57 0 chr21 10756479 10756797 -24150773 + MER1B DNA MER1_type 1 336 -1 305 313 23 15 chr21 10756983 10757114 -24150456 + L1 LINE L1 3682 3813 -2333 430 257 0 9 chr21 10757190 10757303 -24150267 + L1MEc LINE L1 2892 3003 -3212 684 289 76 24 chr21 10757307 10757716 -24149854 + L1MEc LINE L1 3027 3456 -2759 468 277 58 27 chr21 10757815 10758210 -24149360 + L1MEc LINE L1 3583 4013 -2202 590 233 15 55 chr21 10758252 10758454 -24149116 - L1M1 LINE L1 -4673 2892 2699 229 133 22 0 chr21 10758702 10758747 -24148823 + (TAA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr21 10758789 10758811 -24148759 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr21 10758930 10758985 -24148585 + AT_rich Low_complexity Low_complexity 1 55 0 9367 45 6 0 chr21 10759045 10760986 -24146584 - L1PA5 LINE L1 -5 6149 4200 996 50 0 0 chr21 10760986 10761107 -24146463 + L1PA5 LINE L1 4094 4214 -1932 2212 109 0 16 chr21 10761657 10761969 -24145601 + AluSg SINE Alu 1 307 -3 2074 180 70 5 chr21 10763075 10763475 -24144095 + MSTB LTR MaLR 1 426 0 1582 208 64 33 chr21 10763764 10764160 -24143410 + MLT1C LTR MaLR 1 414 -53 2081 110 0 10 chr21 10764160 10764459 -24143111 - AluSg1 SINE Alu -1 308 13 1582 208 64 33 chr21 10764459 10764515 -24143055 + MLT1C LTR MaLR 414 467 0 21 0 0 0 chr21 10764612 10764633 -24142937 + AT_rich Low_complexity Low_complexity 1 21 0 429 318 61 0 chr21 10765232 10765380 -24142190 + L2 LINE L2 2560 2716 -598 564 292 47 26 chr21 10765583 10765775 -24141795 + L1MDb LINE L1 253 448 -5961 755 304 36 49 chr21 10765835 10766164 -24141406 + L1MDb LINE L1 659 983 -5426 1938 306 40 28 chr21 10766159 10766851 -24140719 + L1PA15 LINE L1 1 701 -6086 11499 234 34 24 chr21 10766882 10771361 -24136209 + L1PA15 LINE L1 1261 5810 -1006 2380 81 0 0 chr21 10771361 10771657 -24135913 - AluY SINE Alu -15 296 1 11499 234 34 24 chr21 10771657 10772652 -24134918 + L1PA15 LINE L1 5810 6794 -22 856 227 37 11 chr21 10772665 10772934 -24134636 + L1MDb LINE L1 948 1223 -5186 605 270 4 34 chr21 10772913 10773116 -24134454 + L1MDb LINE L1 2954 3179 -3227 971 258 79 47 chr21 10773422 10773601 -24133969 + L1M4 LINE L1 4154 4326 -1820 2019 179 30 39 chr21 10773601 10774037 -24133533 + Tigger2a DNA MER2_type 2 433 -1 971 258 79 47 chr21 10774037 10774388 -24133182 + L1M4 LINE L1 4326 4701 -1445 448 252 0 42 chr21 10774389 10774508 -24133062 + L1M4 LINE L1 4711 4824 -1322 1148 228 39 7 chr21 10774910 10775191 -24132379 + MLT-int LTR MaLR 1430 1719 -16 1494 163 18 25 chr21 10775981 10776263 -24131307 + AluJb SINE Alu 17 296 -16 2280 191 22 22 chr21 10776786 10776869 -24130701 + LOR1b LTR ERV1 1 83 -378 2386 62 0 0 chr21 10776869 10777161 -24130409 + AluY SINE Alu 1 292 -19 2280 191 22 22 chr21 10777161 10777538 -24130032 + LOR1b LTR ERV1 82 461 0 1915 113 7 45 chr21 10777630 10777950 -24129620 - AluSx SINE Alu 0 309 1 23 54 0 0 chr21 10778398 10778435 -24129135 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 10780561 10780591 -24126979 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 10781520 10781546 -24126024 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr21 10781589 10781610 -24125960 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr21 10782426 10782455 -24125115 + AT_rich Low_complexity Low_complexity 1 29 0 186 71 0 0 chr21 10782455 10782483 -24125087 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2077 91 0 11 chr21 10782483 10782768 -24124802 - AluSc SINE Alu -27 282 1 727 125 75 0 chr21 10782850 10782970 -24124600 + L1PB4 LINE L1 6015 6143 -13 496 215 33 0 chr21 10782970 10783090 -24124480 - L1MC2 LINE L1 0 6344 6220 120 27 0 0 chr21 10783690 10783838 -24123732 + AT_rich Low_complexity Low_complexity 1 148 0 2168 129 0 0 chr21 10784081 10784391 -24123179 - AluSg SINE Alu 0 310 1 362 320 0 0 chr21 10784830 10784933 -24122637 - MER5A DNA MER1_type -84 105 3 267 79 0 0 chr21 10784998 10785036 -24122534 + (CA)n Simple_repeat Simple_repeat 2 39 0 226 296 28 0 chr21 10785588 10785696 -24121874 + T-rich Low_complexity Low_complexity 2 112 0 225 0 0 0 chr21 10786579 10786604 -24120966 + (T)n Simple_repeat Simple_repeat 1 25 0 522 163 0 0 chr21 10787256 10787354 -24120216 + (TA)n Simple_repeat Simple_repeat 1 98 0 21 57 0 0 chr21 10788088 10788123 -24119447 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 10788227 10788248 -24119322 + AT_rich Low_complexity Low_complexity 1 21 0 296 252 35 9 chr21 10788587 10788702 -24118868 + L1MD1 LINE L1 5797 5914 -328 5166 137 19 39 chr21 10788862 10789674 -24117896 - L1PA13 LINE L1 -5 6158 5366 2220 115 0 3 chr21 10789674 10789987 -24117583 - AluSx SINE Alu 0 312 1 5166 137 19 39 chr21 10789987 10790158 -24117412 - L1PA13 LINE L1 -797 5366 5193 4499 202 7 26 chr21 10790159 10790803 -24116767 - L1PA13 LINE L1 -1329 4817 4199 2637 58 0 0 chr21 10790803 10791113 -24116457 - AluY SINE Alu -1 310 1 4499 202 7 26 chr21 10791113 10791509 -24116061 - L1PA13 LINE L1 -1947 4199 3797 1968 221 50 64 chr21 10792416 10793477 -24114093 + LTR27 LTR ERV1 1 1726 -29 1038 157 20 5 chr21 10793505 10793555 -24114015 + L1MA9 LINE L1 6106 6154 -158 282 29 0 0 chr21 10793555 10793590 -24113980 + (CA)n Simple_repeat Simple_repeat 1 35 0 1038 157 20 5 chr21 10793590 10793736 -24113834 + L1MA9 LINE L1 6154 6305 -7 355 38 38 0 chr21 10793849 10793902 -24113668 + (TA)n Simple_repeat Simple_repeat 2 56 0 2220 92 0 25 chr21 10793902 10794217 -24113353 - AluY SINE Alu -4 307 1 855 80 0 0 chr21 10794720 10794832 -24112738 - AluY SINE Alu -11 300 189 2301 96 3 0 chr21 10795295 10795596 -24111974 - AluSc SINE Alu -7 302 1 582 204 37 0 chr21 10796907 10797015 -24110555 + MSTD LTR MaLR 1 112 -316 759 238 52 0 chr21 10797017 10797189 -24110381 + MSTD LTR MaLR 216 396 0 2033 106 27 10 chr21 10797637 10797930 -24109640 - AluSg SINE Alu -12 298 1 25 51 0 0 chr21 10797972 10798011 -24109559 + AT_rich Low_complexity Low_complexity 1 39 0 37 39 0 0 chr21 10798857 10798908 -24108662 + AT_rich Low_complexity Low_complexity 1 51 0 2368 70 0 0 chr21 10798991 10799290 -24108280 - AluY SINE Alu -12 299 1 428 271 53 23 chr21 10799915 10800048 -24107522 - L2 LINE L2 -9 3304 3168 2306 214 16 14 chr21 10800098 10800593 -24106977 - MLT2B2 LTR ERVL -7 508 13 2500 34 0 3 chr21 10800593 10800888 -24106682 + AluY SINE Alu 1 294 -17 951 212 11 0 chr21 10800905 10801094 -24106476 - ERVL-B2 LTR ERVL 0 5764 5574 472 138 12 12 chr21 10801140 10801220 -24106350 - MLT2B2 LTR ERVL -431 84 5 250 145 32 16 chr21 10801370 10801432 -24106138 + (CAGA)n Simple_repeat Simple_repeat 2 64 0 260 210 16 0 chr21 10801390 10801452 -24106118 + GA-rich Low_complexity Low_complexity 2 64 0 24 0 0 0 chr21 10803061 10803085 -24104485 + AT_rich Low_complexity Low_complexity 1 24 0 2149 130 0 0 chr21 10803092 10803399 -24104171 + AluSc SINE Alu 1 307 -2 1752 118 0 8 chr21 10803781 10804026 -24103544 - AluSq SINE Alu -70 243 1 313 357 57 0 chr21 10804104 10804244 -24103326 + L1M4 LINE L1 3998 4145 -2001 22 0 0 0 chr21 10804429 10804451 -24103119 + AT_rich Low_complexity Low_complexity 1 22 0 1558 199 3 13 chr21 10804894 10805196 -24102374 - AluJb SINE Alu -8 304 6 929 96 15 0 chr21 10806066 10806202 -24101368 - L1MA1 LINE L1 -4 6298 6161 291 260 14 0 chr21 10806673 10806746 -24100824 - LTR64 LTR ERVK -483 75 2 30 0 0 0 chr21 10806836 10806866 -24100704 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr21 10806945 10806978 -24100592 + AT_rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr21 10807090 10807111 -24100459 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 1599 225 102 12 chr21 10807157 10807588 -24099982 + MLT1D LTR MaLR 23 492 -13 23 0 0 0 chr21 10807959 10807982 -24099588 + AT_rich Low_complexity Low_complexity 1 23 0 38 51 0 0 chr21 10808622 10808681 -24098889 + AT_rich Low_complexity Low_complexity 1 59 0 1259 182 79 58 chr21 10808818 10809147 -24098423 - MER44D DNA MER2_type 0 609 4 3742 135 13 88 chr21 10809345 10809525 -24098045 + MER50 LTR ERV1 1 193 -541 2309 96 0 0 chr21 10809525 10809827 -24097743 + AluSg1 SINE Alu 1 302 -7 3742 135 13 88 chr21 10809827 10810261 -24097309 + MER50 LTR ERV1 193 544 -190 2377 84 3 0 chr21 10810261 10810569 -24097001 - AluSc SINE Alu 0 309 1 3742 135 13 88 chr21 10810569 10810747 -24096823 + MER50 LTR ERV1 544 734 0 2042 132 0 7 chr21 10811390 10811692 -24095878 - AluSx SINE Alu -12 300 1 2097 117 0 0 chr21 10812419 10812710 -24094860 + AluSg1 SINE Alu 1 291 -18 368 240 70 0 chr21 10813222 10813322 -24094248 + MER5A DNA MER1_type 4 110 -79 328 321 38 27 chr21 10814869 10815053 -24092517 + L1P3 LINE L1 5616 5801 -371 21 0 0 0 chr21 10815106 10815127 -24092443 + AT_rich Low_complexity Low_complexity 1 21 0 2275 76 21 0 chr21 10815139 10815430 -24092140 - AluY SINE Alu -14 297 1 1358 183 3 54 chr21 10815430 10815725 -24091845 - AluJb SINE Alu -32 280 1 22 56 0 0 chr21 10816608 10816644 -24090926 + AT_rich Low_complexity Low_complexity 1 36 0 2884 137 40 2 chr21 10816715 10817190 -24090380 + LOR1a LTR ERV1 1 493 -4 3238 232 90 51 chr21 10818006 10818797 -24088773 + Charlie1a DNA MER1_type 53 919 -1842 2113 115 0 40 chr21 10818797 10819120 -24088450 - AluSx SINE Alu -2 310 1 3238 232 90 51 chr21 10819120 10819674 -24087896 + Charlie1a DNA MER1_type 919 1450 -5 2059 152 0 0 chr21 10820024 10820333 -24087237 + AluSg SINE Alu 1 309 -1 278 290 71 39 chr21 10820625 10820780 -24086790 - L2 LINE L2 -2471 843 684 573 243 37 7 chr21 10821143 10821279 -24086291 - MER45A DNA AcHobo -38 140 1 2462 141 0 5 chr21 10822020 10822397 -24085173 - THE1C LTR MaLR 0 375 1 4540 122 20 16 chr21 10823501 10823864 -24083706 - L1PB1 LINE L1 -5 6146 5786 2117 122 17 0 chr21 10823864 10824160 -24083410 - AluSx SINE Alu -11 301 1 4540 122 20 16 chr21 10824160 10824543 -24083027 - L1PB1 LINE L1 -365 5786 5397 2118 231 6 0 chr21 10824535 10825041 -24082529 + L1P LINE L1 4852 5360 -786 1183 179 4 26 chr21 10825058 10825336 -24082234 - THE1A LTR MaLR -2 353 48 1253 212 8 8 chr21 10825407 10825643 -24081927 - MLT1C LTR MaLR 0 467 232 547 182 98 8 chr21 10825728 10825860 -24081710 - MLT1C LTR MaLR -254 213 70 1793 163 0 43 chr21 10828357 10828683 -24078887 + AluSx SINE Alu 1 312 0 570 126 0 0 chr21 10828713 10828800 -24078770 - Alu SINE Alu -6 304 218 4064 137 32 3 chr21 10828801 10830187 -24077383 + pTR5 LTR ERV1 743 2450 -1 840 73 81 8 chr21 10830188 10830312 -24077258 + LTR12 LTR ERV1 539 671 0 1526 120 0 22 chr21 10830312 10830537 -24077033 - AluSc SINE Alu -89 220 1 35 41 0 0 chr21 10831114 10831163 -24076407 + AT_rich Low_complexity Low_complexity 1 49 0 2853 187 60 42 chr21 10831173 10831885 -24075685 - LTR8A LTR ERV1 0 727 3 4834 82 34 7 chr21 10832110 10832782 -24074788 + LTR8 LTR ERV1 2 691 0 1683 187 114 21 chr21 10832805 10833190 -24074380 - MER61C LTR ERV1 0 434 14 387 0 0 0 chr21 10833723 10833766 -24073804 + (TA)n Simple_repeat Simple_repeat 2 44 0 25 51 0 0 chr21 10834506 10834545 -24073025 + AT_rich Low_complexity Low_complexity 1 39 0 1500 203 68 22 chr21 10835141 10835511 -24072059 + MLT1B LTR MaLR 2 388 -2 290 305 156 8 chr21 10835979 10836107 -24071463 - L2 LINE L2 -153 3160 3014 523 236 6 28 chr21 10836664 10836842 -24070728 + L1MA4A LINE L1 5949 6122 -181 358 211 0 0 chr21 10836852 10836923 -24070647 + L1MA4A LINE L1 6195 6265 -38 26 0 0 0 chr21 10836937 10836963 -24070607 + AT_rich Low_complexity Low_complexity 1 26 0 12250 124 102 71 chr21 10836974 10837548 -24070022 - MER4A-int LTR ERV1 -367 6173 5618 2104 119 0 31 chr21 10837548 10837867 -24069703 + AluSc SINE Alu 1 309 0 12250 124 102 71 chr21 10837867 10838870 -24068700 - MER4A-int LTR ERV1 -922 5618 4648 2105 100 0 27 chr21 10838870 10839170 -24068400 + AluSx SINE Alu 1 292 -20 12250 124 102 71 chr21 10839170 10841194 -24066376 - MER4A-int LTR ERV1 -1892 4648 988 784 118 0 16 chr21 10841192 10841319 -24066251 - MER4A-int LTR ERV1 -4976 1622 1498 510 124 11 22 chr21 10841321 10841410 -24066160 - MER4A-int LTR ERV1 -5506 1092 1005 1803 141 11 7 chr21 10841396 10841780 -24065790 - MER4A-int LTR ERV1 -5997 601 174 516 75 15 0 chr21 10841782 10841849 -24065721 - MER4A-int LTR ERV1 -6530 68 1 1628 141 26 62 chr21 10841852 10842156 -24065414 - MER4A LTR ERV1 0 664 372 572 133 10 10 chr21 10842208 10842306 -24065264 - MER4A LTR ERV1 -566 98 1 1873 123 0 0 chr21 10842974 10843234 -24064336 + AluSc SINE Alu 38 297 -12 22 70 0 0 chr21 10844155 10844198 -24063372 + AT_rich Low_complexity Low_complexity 1 43 0 194 392 10 10 chr21 10844346 10844448 -24063122 - L3 LINE CR1 -417 1160 1059 26 64 0 0 chr21 10844597 10844644 -24062926 + AT_rich Low_complexity Low_complexity 1 47 0 1585 102 37 4 chr21 10844978 10845223 -24062347 + L1PA13 LINE L1 5905 6157 -6 2047 166 31 56 chr21 10845512 10845957 -24061613 - Tigger2a DNA MER2_type 0 434 1 2433 69 3 0 chr21 10846041 10846346 -24061224 + AluY SINE Alu 1 306 -5 576 61 0 24 chr21 10847208 10847290 -24060280 - L1PA6 LINE L1 -6 6148 6069 214 123 80 18 chr21 10847555 10847718 -24059852 + (TTATA)n Simple_repeat Simple_repeat 5 177 0 323 170 47 29 chr21 10847718 10847889 -24059681 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 693 220 14 7 chr21 10848836 10848977 -24058593 + FAM SINE Alu 28 169 -16 207 222 22 0 chr21 10848977 10849022 -24058548 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 1323 240 25 56 chr21 10849313 10849792 -24057778 - MLT1C LTR MaLR -3 464 1 22 0 0 0 chr21 10850055 10850077 -24057493 + AT_rich Low_complexity Low_complexity 1 22 0 457 366 41 31 chr21 10850836 10851153 -24056417 - L2 LINE L2 -190 3123 2804 757 302 40 14 chr21 10851180 10851455 -24056115 - L2 LINE L2 -557 2757 2476 203 244 0 0 chr21 10851457 10851502 -24056068 + (TG)n Simple_repeat Simple_repeat 2 46 0 187 283 94 57 chr21 10851515 10851621 -24055949 - L2 LINE L2 -832 2482 2373 1784 146 0 28 chr21 10852270 10852586 -24054984 + AluSg SINE Alu 1 308 0 2148 108 7 13 chr21 10853418 10853724 -24053846 + AluSg SINE Alu 1 304 -6 279 0 0 0 chr21 10853966 10853997 -24053573 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr21 10854099 10854127 -24053443 + AT_rich Low_complexity Low_complexity 1 28 0 2186 120 50 6 chr21 10855654 10856013 -24051557 - THE1C LTR MaLR 0 375 1 228 35 0 0 chr21 10856067 10856096 -24051474 + (GA)n Simple_repeat Simple_repeat 2 30 0 448 289 11 22 chr21 10857347 10857527 -24050043 + (TA)n Simple_repeat Simple_repeat 2 179 0 286 279 19 0 chr21 10857616 10857720 -24049850 + (CATATA)n Simple_repeat Simple_repeat 4 109 0 2587 149 0 47 chr21 10857725 10857761 -24049809 - MSTC LTR MaLR -5 423 387 2140 106 7 0 chr21 10857761 10858063 -24049507 + AluSq SINE Alu 1 304 -9 2587 149 0 47 chr21 10858063 10858470 -24049100 - MSTC LTR MaLR -41 387 1 355 171 0 23 chr21 10860367 10860449 -24047121 + (TA)n Simple_repeat Simple_repeat 1 81 0 1883 133 7 4 chr21 10860449 10860728 -24046842 - AluSp SINE Alu -33 280 1 1602 203 3 7 chr21 10860733 10861024 -24046546 - AluJb SINE Alu -22 290 1 27 0 0 0 chr21 10861598 10861625 -24045945 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr21 10861798 10861825 -24045745 + AT_rich Low_complexity Low_complexity 1 27 0 3412 219 12 16 chr21 10862014 10862844 -24044726 + L1 LINE L1 3859 4685 -1461 5286 182 19 3 chr21 10862842 10864257 -24043313 + L1PA16 LINE L1 4722 6166 0 22 35 0 0 chr21 10864315 10864344 -24043226 + AT_rich Low_complexity Low_complexity 1 29 0 362 341 36 15 chr21 10865357 10865483 -24042087 - MLT1J2 LTR MaLR -171 275 153 450 0 0 0 chr21 10865483 10865533 -24042037 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 362 341 36 15 chr21 10865533 10865671 -24041899 - MLT1J2 LTR MaLR -293 153 5 24 0 0 0 chr21 10866078 10866102 -24041468 + AT_rich Low_complexity Low_complexity 1 24 0 240 86 0 0 chr21 10866243 10866278 -24041292 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 2178 82 9 31 chr21 10866453 10866771 -24040799 - AluSq SINE Alu -2 311 1 1155 236 0 8 chr21 10866913 10867176 -24040394 + L1MC3 LINE L1 7510 7770 -15 216 0 0 0 chr21 10867500 10867524 -24040046 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 2678 218 35 11 chr21 10868217 10868929 -24038641 - L1M3c LINE L1 -2843 3801 3073 2212 270 55 30 chr21 10868930 10869932 -24037638 - L1 LINE L1 -4024 2620 1522 699 201 0 24 chr21 10869937 10870106 -24037464 - L1M3c LINE L1 -4691 1884 1720 1587 227 50 0 chr21 10870104 10870484 -24037086 + L1MA6 LINE L1 3294 3696 -2450 378 0 0 0 chr21 10870484 10870526 -24037044 + (CA)n Simple_repeat Simple_repeat 1 42 0 1587 227 50 0 chr21 10870526 10870546 -24037024 + L1MA6 LINE L1 3696 3714 -2432 7236 197 33 11 chr21 10870547 10873052 -24034518 + L1MA6 LINE L1 3733 6299 -1 189 0 0 0 chr21 10873548 10873569 -24034001 + (T)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr21 10874964 10874987 -24032583 + AT_rich Low_complexity Low_complexity 1 23 0 1399 239 15 0 chr21 10877114 10877377 -24030193 + Tigger7 DNA MER2_type 1 267 -2220 551 149 53 21 chr21 10877375 10877469 -24030101 + Tigger7 DNA MER2_type 2390 2486 -1 183 80 0 0 chr21 10878304 10878329 -24029241 + (T)n Simple_repeat Simple_repeat 1 25 0 679 352 97 54 chr21 10879028 10879124 -24028446 - L2 LINE L2 -653 2661 2571 2092 111 0 14 chr21 10879124 10879421 -24028149 - AluSg SINE Alu -17 293 1 679 352 97 54 chr21 10879421 10881075 -24026495 - L2 LINE L2 -743 2571 797 365 316 81 48 chr21 10881303 10881512 -24026058 + MLT1H LTR MaLR 88 303 -246 304 256 38 25 chr21 10881562 10881724 -24025846 + MLT1G LTR MaLR 426 585 -4 1213 207 78 7 chr21 10882075 10882233 -24025337 - AluJo SINE Alu -17 295 109 423 0 0 0 chr21 10882233 10882280 -24025290 + (TG)n Simple_repeat Simple_repeat 2 48 0 1213 207 78 7 chr21 10882280 10882392 -24025178 - AluJo SINE Alu -203 109 6 399 41 0 0 chr21 10882874 10882923 -24024647 + (TG)n Simple_repeat Simple_repeat 2 50 0 264 234 0 0 chr21 10882927 10882991 -24024579 + L1MC4 LINE L1 6640 6703 -1339 300 154 0 46 chr21 10883013 10883078 -24024492 - L1MC4 LINE L1 -1339 6703 6642 330 26 0 0 chr21 10883127 10883166 -24024404 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 73 0 0 chr21 10884621 10884662 -24022908 + Alu SINE Alu 268 308 0 1232 231 51 0 chr21 10885052 10885325 -24022245 + AluJo SINE Alu 1 287 -25 449 135 0 0 chr21 10886767 10886841 -24020729 + MADE1 DNA Mariner 7 80 0 29 28 0 0 chr21 10887540 10887576 -24019994 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr21 10888608 10888652 -24018918 + AT_rich Low_complexity Low_complexity 1 44 0 4014 31 2 2 chr21 10889629 10890118 -24017452 - L1PA4 LINE L1 -4 6151 5663 2878 15 0 0 chr21 10890118 10890449 -24017121 + L1PA4 LINE L1 5337 5667 -488 21 0 0 0 chr21 10891401 10891422 -24016148 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr21 10892547 10892574 -24014996 + (GA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr21 10892625 10892646 -24014924 + AT_rich Low_complexity Low_complexity 1 21 0 448 283 28 11 chr21 10892668 10892848 -24014722 - L1ME LINE L1 -364 5757 5575 576 291 48 62 chr21 10892884 10893303 -24014267 + L1M4 LINE L1 2444 2856 -3290 1030 191 123 90 chr21 10893399 10893766 -24013804 - MSTB2 LTR MaLR -64 393 15 21 71 0 0 chr21 10893942 10893984 -24013586 + AT_rich Low_complexity Low_complexity 1 42 0 32 43 0 0 chr21 10894357 10894403 -24013167 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr21 10895357 10895386 -24012184 + AT_rich Low_complexity Low_complexity 1 29 0 924 207 30 94 chr21 10896099 10896462 -24011108 + L1MA8 LINE L1 5923 6262 -29 21 36 0 0 chr21 10897627 10897655 -24009915 + AT_rich Low_complexity Low_complexity 1 28 0 1905 123 0 14 chr21 10897656 10897941 -24009629 + AluSx SINE Alu 23 303 -9 216 195 0 49 chr21 10898247 10898329 -24009241 + (TTAAA)n Simple_repeat Simple_repeat 3 80 0 22 0 0 0 chr21 10898529 10898551 -24009019 + AT_rich Low_complexity Low_complexity 1 22 0 1141 252 37 15 chr21 10898602 10899010 -24008560 + L1M4 LINE L1 2404 2820 -3326 2359 59 0 13 chr21 10899011 10899317 -24008253 + AluY SINE Alu 1 302 -9 2037 86 3 53 chr21 10899372 10899673 -24007897 + AluY SINE Alu 1 286 -25 269 143 36 0 chr21 10899691 10899747 -24007823 + Alu SINE Alu 245 302 0 480 268 0 0 chr21 10899747 10899885 -24007685 + L1M4 LINE L1 2895 3032 -3114 497 116 41 41 chr21 10899903 10900050 -24007520 + GA-rich Low_complexity Low_complexity 4 150 0 2525 235 32 19 chr21 10900082 10900758 -24006812 + MER76 LTR ERV 1 685 -3 697 200 0 0 chr21 10900760 10900925 -24006645 + L1M4 LINE L1 3085 3249 -2897 1292 267 25 38 chr21 10900951 10901505 -24006065 + L1M4 LINE L1 3249 3795 -2351 1533 181 89 38 chr21 10901513 10902071 -24005499 - LTR48B LTR ERV1 -8 636 11 838 276 39 34 chr21 10902081 10902255 -24005315 + L1M4 LINE L1 3787 3959 -2187 2056 131 45 28 chr21 10902255 10902613 -24004957 + THE1B LTR MaLR 1 364 0 10980 119 6 1 chr21 10902613 10904186 -24003384 + THE1B-int LTR MaLR 1 1580 0 2185 121 30 30 chr21 10904186 10904550 -24003020 + THE1B LTR MaLR 1 364 0 838 276 39 34 chr21 10904550 10904840 -24002730 + L1M4 LINE L1 3958 4255 -1891 701 114 9 0 chr21 10906268 10906382 -24001188 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 370 209 11 11 chr21 10906383 10906474 -24001096 + CT-rich Low_complexity Low_complexity 2 92 0 648 333 71 37 chr21 10906475 10906856 -24000714 + LTR16C LTR ERVL 97 490 -1 1820 235 29 21 chr21 10907392 10907878 -23999692 + MER67A LTR ERV1 3 527 -16 1560 202 0 19 chr21 10907878 10908195 -23999375 - AluSx SINE Alu -1 311 1 1820 235 29 21 chr21 10908195 10908213 -23999357 + MER67A LTR ERV1 527 543 0 26 50 0 0 chr21 10908253 10908293 -23999277 + AT_rich Low_complexity Low_complexity 1 40 0 514 347 71 32 chr21 10908455 10908898 -23998672 - L2 LINE L2 -253 3060 2607 907 181 7 0 chr21 10909694 10909843 -23997727 + AluSx SINE Alu 3 152 -161 410 254 80 50 chr21 10909849 10910114 -23997456 + LTR1 LTR ERV1 1 425 -565 1096 198 84 134 chr21 10910128 10910568 -23997002 + LTR1B LTR ERV1 314 731 -95 249 206 16 16 chr21 10910703 10910766 -23996804 + LTR28 LTR ERV1 958 1020 0 927 164 0 0 chr21 10910766 10910906 -23996664 + AluSx SINE Alu 145 284 -26 784 248 56 36 chr21 10911072 10911696 -23995874 - L1MEc LINE L1 -3594 2621 2032 1988 109 18 0 chr21 10911721 10911997 -23995573 + AluSp SINE Alu 12 292 -21 2109 128 0 0 chr21 10912026 10912322 -23995248 - AluSx SINE Alu -16 296 1 2462 96 19 16 chr21 10912629 10912992 -23994578 + MLT2A2 LTR ERVL 2 365 -88 386 115 0 0 chr21 10912992 10913053 -23994517 + HERVL-A2 LTR ERVL 13 73 -5581 2704 90 3 0 chr21 10913053 10913755 -23993815 - THE1B-int LTR MaLR -844 736 1 1139 154 51 26 chr21 10913755 10913950 -23993620 - THE1B LTR MaLR 0 364 165 1761 289 59 26 chr21 10914100 10914882 -23992688 - L1MEc LINE L1 -5552 844 37 3336 28 2 0 chr21 10917842 10918238 -23989332 - L1PA3 LINE L1 -1052 5094 4698 7700 22 0 0 chr21 10918238 10919298 -23988272 + L1PA3 LINE L1 5093 6152 -3 653 163 31 16 chr21 10919502 10919631 -23987939 + FLAM_C SINE Alu 1 131 -12 1604 182 31 7 chr21 10920301 10920587 -23986983 - AluJb SINE Alu -19 293 1 573 216 76 59 chr21 10920733 10921099 -23986471 + MSTB2 LTR MaLR 1 452 -5 1909 225 60 47 chr21 10921190 10921741 -23985829 - MER89 LTR ERV1 0 559 2 1615 197 3 3 chr21 10922291 10922580 -23984990 + AluJb SINE Alu 18 306 -6 943 164 24 0 chr21 10922583 10922748 -23984822 + L1PB3 LINE L1 5986 6154 0 4416 96 13 0 chr21 10923305 10923931 -23983639 - L1PA10 LINE L1 -234 5934 5301 18995 149 14 8 chr21 10923930 10927234 -23980336 - L1PA10 LINE L1 -1291 4855 1531 5119 191 20 5 chr21 10927258 10928917 -23978653 - L1MA4 LINE L1 -9 6291 4608 425 198 50 0 chr21 10928917 10929018 -23978552 + Tigger5 DNA MER2_type 2213 2318 -5 28 61 0 0 chr21 10930174 10930223 -23977347 + AT_rich Low_complexity Low_complexity 1 49 0 24 32 0 0 chr21 10930402 10930433 -23977137 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr21 10930870 10930913 -23976657 + AT_rich Low_complexity Low_complexity 1 43 0 251 162 88 12 chr21 10931244 10931324 -23976246 - L1MA10 LINE L1 -1 6333 6248 282 167 0 42 chr21 10931361 10931433 -23976137 - L1MA10 LINE L1 -13 6321 6253 1324 212 59 10 chr21 10931914 10932202 -23975368 + AluJb SINE Alu 1 302 -10 257 0 30 0 chr21 10932237 10932270 -23975300 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 1157 154 31 0 chr21 10932270 10932465 -23975105 - L1PB4 LINE L1 -11 6145 5945 2165 127 3 0 chr21 10933197 10933497 -23974073 - AluSx SINE Alu -11 301 1 2521 212 16 22 chr21 10933976 10934481 -23973089 - MLT2B2 LTR ERVL -13 502 1 1615 167 88 25 chr21 10934696 10935049 -23972521 + THE1C LTR MaLR 1 375 0 2883 131 52 79 chr21 10935049 10935760 -23971810 + THE1C-int LTR MaLR 1 637 -943 64 96 0 0 chr21 10936617 10936814 -23970756 + AT_rich Low_complexity Low_complexity 1 197 0 2884 172 2 52 chr21 10938044 10938165 -23969405 + L1PA16 LINE L1 5592 5718 -448 234 0 0 0 chr21 10938165 10938191 -23969379 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 2884 172 2 52 chr21 10938191 10938645 -23968925 + L1PA16 LINE L1 5718 6138 -28 2281 113 0 13 chr21 10939713 10940023 -23967547 + AluSg SINE Alu 5 310 0 21 0 0 0 chr21 10940282 10940303 -23967267 + AT_rich Low_complexity Low_complexity 1 21 0 3150 148 22 4 chr21 10940415 10941127 -23966443 + L1PA15 LINE L1 5398 6160 -5 306 223 24 84 chr21 10941231 10941352 -23966218 - L1MC5 LINE L1 -401 7560 7450 1719 248 62 57 chr21 10941352 10941954 -23965616 + MER77 LTR ERV1 1 605 0 306 223 24 84 chr21 10941954 10941998 -23965572 - L1MC5 LINE L1 -511 7450 7405 26 0 0 0 chr21 10942818 10942844 -23964726 + AT_rich Low_complexity Low_complexity 1 26 0 312 158 18 0 chr21 10944095 10944152 -23963418 + LTR60 LTR ERV1 1 58 -528 2037 111 50 0 chr21 10944348 10944646 -23962924 + AluSp SINE Alu 1 313 0 1061 230 24 31 chr21 10944648 10944939 -23962631 + LTR43 LTR ERV1 173 461 -141 271 273 0 0 chr21 10944976 10945031 -23962539 + MER50 LTR ERV1 631 685 -49 33 56 0 0 chr21 10945085 10945139 -23962431 + AT_rich Low_complexity Low_complexity 1 54 0 998 138 66 0 chr21 10945485 10945652 -23961918 + MER21A LTR ERV1 754 931 0 1384 190 7 38 chr21 10945652 10945942 -23961628 + MER21A-int LTR ERV1 1 281 -3910 631 184 9 0 chr21 10945942 10946051 -23961519 + MER72 LTR ERV1 1 110 -612 2603 200 8 4 chr21 10946051 10946535 -23961035 + MER66B LTR ERV1 1 486 0 1987 131 10 25 chr21 10946555 10946869 -23960701 - THE1B LTR MaLR 0 364 56 1393 127 14 0 chr21 10947058 10947270 -23960300 + MER72 LTR ERV1 508 722 0 17510 203 38 25 chr21 10947270 10948091 -23959479 + MER21A-int LTR ERV1 279 1088 -3103 2339 67 0 0 chr21 10948091 10948405 -23959165 + AluY SINE Alu 1 311 0 17510 203 38 25 chr21 10948405 10949124 -23958446 + MER21A-int LTR ERV1 1088 1796 -2395 1983 175 69 17 chr21 10949124 10949529 -23958041 - MSTB LTR MaLR 0 426 1 17510 203 38 25 chr21 10949529 10949746 -23957824 + MER21A-int LTR ERV1 1796 2009 -2182 2652 48 0 0 chr21 10949746 10950056 -23957514 - AluY SINE Alu 0 311 2 17510 203 38 25 chr21 10950056 10951071 -23956499 + MER21A-int LTR ERV1 2009 3009 -1182 277 24 48 0 chr21 10951071 10951113 -23956457 + (CAA)n Simple_repeat Simple_repeat 2 45 0 17510 203 38 25 chr21 10951113 10952145 -23955425 + MER21A-int LTR ERV1 3009 4135 -56 2350 57 3 3 chr21 10952269 10952596 -23954974 - AluY SINE Alu 0 327 1 323 261 0 0 chr21 10952597 10952666 -23954904 + MER21B LTR ERV1 11 79 -784 1093 219 56 8 chr21 10952757 10952886 -23954684 - AluJo SINE Alu -49 263 142 288 0 0 0 chr21 10952886 10952918 -23954652 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1093 219 56 8 chr21 10952918 10953039 -23954531 - AluJo SINE Alu -170 142 1 1057 145 0 0 chr21 10954913 10955065 -23952505 - AluSq SINE Alu -26 287 136 21 36 0 0 chr21 10955487 10955515 -23952055 + AT_rich Low_complexity Low_complexity 1 28 0 234 315 0 96 chr21 10956467 10956552 -23951018 - L2 LINE L2 0 3313 3246 1539 166 37 87 chr21 10956552 10956931 -23950639 + THE1B LTR MaLR 1 360 -4 234 315 0 96 chr21 10956931 10956991 -23950579 - L2 LINE L2 -67 3246 3182 1178 196 76 99 chr21 10957289 10957775 -23949795 - LTR45B LTR ERV1 -10 479 5 518 174 22 0 chr21 10957930 10958022 -23949548 - MER101 LTR ERV1 -204 270 177 618 189 35 129 chr21 10958254 10958484 -23949086 - LTR49-int LTR ERV1 -1256 3680 3487 2269 99 0 7 chr21 10958484 10958786 -23948784 + AluY SINE Alu 2 301 -10 618 189 35 129 chr21 10958786 10958872 -23948698 - LTR49-int LTR ERV1 -1449 3487 3394 415 157 101 90 chr21 10958870 10959048 -23948522 - LTR49-int LTR ERV1 -1758 4573 4394 1734 101 13 0 chr21 10959114 10959341 -23948229 - AluSp SINE Alu -60 253 24 1066 191 31 35 chr21 10959342 10959630 -23947940 - LTR49-int LTR ERV1 -4434 2324 2038 579 222 74 12 chr21 10959709 10959871 -23947699 - LTR49-int LTR ERV1 -3225 3106 2935 1913 229 112 43 chr21 10960829 10961507 -23946063 - MER50 LTR ERV1 0 734 10 1014 189 94 130 chr21 10962123 10962578 -23944992 - LTR45B LTR ERV1 0 489 51 1894 138 3 3 chr21 10962585 10962891 -23944679 + AluSx SINE Alu 1 306 0 581 239 22 0 chr21 10963068 10963202 -23944368 - MER89 LTR ERV1 -52 507 371 964 146 0 43 chr21 10963637 10963801 -23943769 + AluSx SINE Alu 32 188 -124 1174 161 10 21 chr21 10963800 10963993 -23943577 + AluSg/x SINE Alu 108 298 -12 22 0 0 0 chr21 10964536 10964558 -23943012 + AT_rich Low_complexity Low_complexity 1 22 0 399 41 0 0 chr21 10964590 10964639 -23942931 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 34 65 0 0 chr21 10966232 10966294 -23941276 + AT_rich Low_complexity Low_complexity 1 62 0 202 363 77 12 chr21 10966591 10966759 -23940811 + L2 LINE L2 851 1029 -2285 2475 63 0 10 chr21 10967292 10967592 -23939978 - AluY SINE Alu -14 297 1 1773 235 92 2 chr21 10967903 10968406 -23939164 - L1M4 LINE L1 -920 5226 4679 1634 220 9 8 chr21 10968896 10969324 -23938246 + MLT1C LTR MaLR 3 465 -2 627 259 41 12 chr21 10970102 10970272 -23937298 - MER101 LTR ERV1 -58 416 242 299 243 27 14 chr21 10970244 10970318 -23937252 - MER101B LTR ERV1 -248 322 248 279 276 133 0 chr21 10970541 10970646 -23936924 + L1MEd LINE L1 1082 1200 -4919 388 330 87 35 chr21 10970753 10971041 -23936529 + L1MEd LINE L1 1320 1622 -4688 21 36 0 0 chr21 10971046 10971074 -23936496 + AT_rich Low_complexity Low_complexity 1 28 0 887 314 45 18 chr21 10971081 10971527 -23936043 + L1ME3A LINE L1 5669 6126 -44 22 35 0 0 chr21 10971527 10971556 -23936014 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 10972352 10972375 -23935195 + AT_rich Low_complexity Low_complexity 1 23 0 1445 181 11 26 chr21 10972599 10972870 -23934700 - AluJo SINE Alu -32 280 14 1279 90 0 0 chr21 10973311 10973478 -23934092 + AluY SINE Alu 134 300 -11 30 0 0 0 chr21 10973944 10973974 -23933596 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr21 10974062 10974087 -23933483 + AT_rich Low_complexity Low_complexity 1 25 0 1607 146 21 125 chr21 10974599 10974970 -23932600 + MLT1B LTR MaLR 1 322 -68 2160 117 0 3 chr21 10974970 10975279 -23932291 - AluY SINE Alu -3 308 1 1607 146 21 125 chr21 10975279 10975339 -23932231 + MLT1B LTR MaLR 322 387 -3 1727 159 26 62 chr21 10975527 10975916 -23931654 - THE1C LTR MaLR 0 375 1 347 129 0 58 chr21 10976742 10976913 -23930657 + (TA)n Simple_repeat Simple_repeat 1 161 0 186 43 0 0 chr21 10977761 10977784 -23929786 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr21 10977876 10977898 -23929672 + AT_rich Low_complexity Low_complexity 1 22 0 3685 171 16 29 chr21 10977898 10978664 -23928906 - L1MA4 LINE L1 -10 6290 5535 24 32 0 0 chr21 10982064 10982095 -23925475 + AT_rich Low_complexity Low_complexity 1 31 0 1440 63 19 19 chr21 10982335 10982541 -23925029 + L1PA5 LINE L1 5944 6149 -5 23 0 0 0 chr21 10982908 10982931 -23924639 + AT_rich Low_complexity Low_complexity 1 23 0 1421 24 0 0 chr21 10983464 10983631 -23923939 - L1P1 LINE L1 -373 5782 5616 3381 36 9 9 chr21 10983544 10984000 -23923570 + L1HS LINE L1 5675 6155 0 26 0 0 0 chr21 10984379 10984405 -23923165 + AT_rich Low_complexity Low_complexity 1 26 0 2034 162 39 8 chr21 10984654 10985018 -23922552 + THE1C LTR MaLR 1 375 0 41 48 0 0 chr21 10985026 10985088 -23922482 + AT_rich Low_complexity Low_complexity 1 62 0 2129 125 30 55 chr21 10986831 10987192 -23920378 - THE1C LTR MaLR -2 373 22 287 157 14 0 chr21 10989040 10989110 -23918460 + GA-rich Low_complexity Low_complexity 2 72 0 1649 145 61 71 chr21 10989706 10990085 -23917485 + THE1C LTR MaLR 1 375 0 1688 162 29 0 chr21 10990777 10991049 -23916521 + AluSg SINE Alu 1 280 -30 369 0 0 0 chr21 10991052 10991093 -23916477 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 282 278 61 17 chr21 10991094 10991209 -23916361 + Zaphod DNA AcHobo 3875 3994 -29 2207 109 0 0 chr21 10993213 10993507 -23914063 + AluSp SINE Alu 1 294 -19 961 208 6 0 chr21 10993511 10993689 -23913881 + FRAM SINE Alu 1 176 0 204 40 0 0 chr21 10995103 10995119 -23912451 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 40 0 0 chr21 10995119 10995144 -23912426 + (CA)n Simple_repeat Simple_repeat 2 26 0 203 161 0 0 chr21 10995145 10995176 -23912394 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 1458 186 7 35 chr21 10995190 10995480 -23912090 - AluJb SINE Alu -30 282 1 25 31 0 0 chr21 10996383 10996415 -23911155 + AT_rich Low_complexity Low_complexity 1 32 0 264 122 0 0 chr21 10996445 10996486 -23911084 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr21 10996836 10996858 -23910712 + AT_rich Low_complexity Low_complexity 1 22 0 275 242 84 0 chr21 10997248 10997343 -23910227 - L1MC3 LINE L1 -159 7626 7524 1207 206 64 21 chr21 10997421 10997702 -23909868 + MLT1A1 LTR MaLR 73 365 0 1013 229 69 28 chr21 10997702 10997990 -23909580 - L1MC3 LINE L1 -253 7532 7233 1680 252 12 2 chr21 10998071 10998492 -23909078 - L1MC3 LINE L1 -1201 6584 6160 2143 124 0 3 chr21 10999228 10999535 -23908035 - AluSc SINE Alu -3 306 1 382 280 18 77 chr21 10999644 10999812 -23907758 - L2 LINE L2 -34 3279 3122 303 349 42 24 chr21 10999938 11000104 -23907466 - MLT2E LTR ERVL -357 271 103 25 31 0 0 chr21 11000420 11000452 -23907118 + AT_rich Low_complexity Low_complexity 1 32 0 1045 309 41 3 chr21 11000876 11001238 -23906332 + L1MEc LINE L1 180 555 -5841 525 139 28 0 chr21 11001265 11001373 -23906197 + CT-rich Low_complexity Low_complexity 2 112 0 1570 100 43 9 chr21 11001377 11001607 -23905963 - AluSq SINE Alu -21 292 55 21 0 0 0 chr21 11001954 11001975 -23905595 + AT_rich Low_complexity Low_complexity 1 21 0 1910 129 4 4 chr21 11002020 11002300 -23905270 - AluSx SINE Alu -32 280 1 2734 10 0 10 chr21 11002716 11003025 -23904545 - AluYb8 SINE Alu -12 306 1 21 36 0 0 chr21 11003322 11003350 -23904220 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 11004054 11004083 -23903487 + AT_rich Low_complexity Low_complexity 1 29 0 1352 284 107 20 chr21 11004376 11004936 -23902634 + MER90 LTR ERV1 6 614 0 1823 163 27 0 chr21 11005648 11005949 -23901621 + AluSx SINE Alu 1 309 -3 1784 204 28 3 chr21 11007159 11007522 -23900048 + MER67C LTR ERV1 265 636 -74 816 111 0 0 chr21 11007635 11007743 -23899827 + AluSq/x SINE Alu 1 108 -205 42 86 0 0 chr21 11007746 11007851 -23899719 + AT_rich Low_complexity Low_complexity 1 105 0 426 117 13 0 chr21 11007864 11007941 -23899629 + MER67C LTR ERV1 631 708 -2 25 90 0 0 chr21 11008306 11008373 -23899197 + AT_rich Low_complexity Low_complexity 1 67 0 454 186 53 18 chr21 11009559 11009672 -23897898 - L1MEc LINE L1 -6267 129 13 447 311 46 50 chr21 11009657 11009855 -23897715 - L1MEc LINE L1 -1542 4673 4476 1255 223 29 61 chr21 11009855 11010232 -23897338 - MLT1A1 LTR MaLR 0 365 1 447 311 46 50 chr21 11010232 11010545 -23897025 - L1MEc LINE L1 -1739 4476 4163 2003 148 0 6 chr21 11010545 11010856 -23896714 - AluSx SINE Alu -3 309 1 447 311 46 50 chr21 11010856 11010968 -23896602 - L1MEc LINE L1 -2052 4163 4050 1249 230 86 84 chr21 11010968 11011152 -23896418 + MLT1C LTR MaLR 1 183 -284 2221 80 7 3 chr21 11011152 11011440 -23896130 + AluSq SINE Alu 1 289 -24 1249 230 86 84 chr21 11011440 11011721 -23895849 + MLT1C LTR MaLR 183 467 0 447 311 46 50 chr21 11011721 11011752 -23895818 - L1MEc LINE L1 -2165 4050 4020 22 0 0 0 chr21 11011767 11011789 -23895781 + AT_rich Low_complexity Low_complexity 1 22 0 940 252 106 94 chr21 11012000 11012496 -23895074 - L1MEc LINE L1 -2570 3645 3156 6046 39 0 1 chr21 11012496 11013232 -23894338 - L1PA5 LINE L1 -7 6147 5413 940 252 106 94 chr21 11013232 11013915 -23893655 - L1MEc LINE L1 -3059 3156 2444 1393 235 30 45 chr21 11013915 11014311 -23893259 + MLT1B LTR MaLR 1 390 0 940 252 106 94 chr21 11014311 11014550 -23893020 - L1MEc LINE L1 -3771 2444 2209 495 316 10 20 chr21 11014707 11014903 -23892667 - L1MEc LINE L1 -5011 1385 1192 2489 57 0 0 chr21 11014973 11015272 -23892298 - AluY SINE Alu -12 299 1 1988 134 0 44 chr21 11015300 11015620 -23891950 + AluSc SINE Alu 3 308 -1 187 179 0 179 chr21 11016257 11016324 -23891246 - L2 LINE L2 -5 3308 3254 1974 139 7 0 chr21 11016409 11016719 -23890851 - AluSx SINE Alu 0 312 1 948 324 72 41 chr21 11018220 11019175 -23888395 + L1MEc LINE L1 59 1043 -5353 298 352 28 25 chr21 11019413 11019777 -23887793 + L1MEc LINE L1 1345 1709 -4687 537 305 57 43 chr21 11019804 11020312 -23887258 + L1 LINE L1 4060 4574 -1572 25 102 0 0 chr21 11020406 11020494 -23887076 + AT_rich Low_complexity Low_complexity 1 88 0 3599 118 25 0 chr21 11020738 11021308 -23886262 + L1PB2 LINE L1 5568 6151 0 251 232 29 0 chr21 11022324 11022393 -23885177 - L1ME LINE L1 -384 5737 5667 396 190 0 0 chr21 11022577 11022656 -23884914 + MADE1 DNA Mariner 1 79 -1 22 88 0 0 chr21 11023028 11023085 -23884485 + AT_rich Low_complexity Low_complexity 1 57 0 273 98 0 0 chr21 11023958 11023999 -23883571 + (TG)n Simple_repeat Simple_repeat 2 42 0 29 47 0 0 chr21 11024119 11024162 -23883408 + AT_rich Low_complexity Low_complexity 1 43 0 595 229 0 8 chr21 11024322 11024444 -23883126 - AluJb SINE Alu -59 253 133 1810 179 92 23 chr21 11024462 11024853 -23882717 - MER47B DNA MER2_type 0 418 1 250 364 21 56 chr21 11024930 11025073 -23882497 - L2 LINE L2 -8 3264 3127 1900 132 14 7 chr21 11025686 11025982 -23881588 + AluSx SINE Alu 1 298 -14 306 182 0 0 chr21 11025988 11026054 -23881516 + GA-rich Low_complexity Low_complexity 1 66 0 192 77 0 0 chr21 11026049 11026075 -23881495 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 278 329 49 7 chr21 11026104 11026247 -23881323 + L1MC4 LINE L1 7322 7470 -572 2216 219 6 9 chr21 11026461 11026985 -23880585 + L1 LINE L1 4688 5209 -937 3079 154 38 22 chr21 11026994 11027577 -23879993 - LTR1 LTR ERV1 0 785 194 1204 167 46 53 chr21 11027582 11027864 -23879706 - LTR1 LTR ERV1 -497 288 9 901 55 16 8 chr21 11027875 11028003 -23879567 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 2028 111 4 7 chr21 11028004 11028284 -23879286 - AluSp SINE Alu -32 281 3 4875 156 25 10 chr21 11028353 11029286 -23878284 + L1PA16 LINE L1 5206 6150 -16 650 256 79 35 chr21 11029828 11030210 -23877360 - L1ME LINE L1 -562 5608 5215 2614 20 0 0 chr21 11030298 11030597 -23876973 - AluYa5 SINE Alu -5 306 8 231 253 143 11 chr21 11030705 11030796 -23876774 - L1ME3A LINE L1 -189 5981 5879 417 261 61 71 chr21 11030993 11031360 -23876210 - L1ME3A LINE L1 -459 5703 5335 398 289 88 16 chr21 11031549 11031680 -23875890 - L1ME LINE L1 -1117 5029 4909 204 40 0 0 chr21 11031680 11031705 -23875865 + (TA)n Simple_repeat Simple_repeat 2 26 0 2018 94 4 0 chr21 11031705 11031970 -23875600 - AluY SINE Alu -18 293 28 398 289 88 16 chr21 11031970 11032031 -23875539 - L1ME LINE L1 -1236 4910 4822 553 323 58 51 chr21 11032167 11032731 -23874839 - L1ME LINE L1 -1432 4714 4147 1596 289 58 50 chr21 11033125 11033409 -23874161 + L1ME3A LINE L1 4780 5060 -1110 986 259 45 56 chr21 11033409 11033787 -23873783 - MLT1A2 LTR MaLR 0 374 1 1596 289 58 50 chr21 11033787 11034862 -23872708 + L1ME3A LINE L1 5060 6157 -13 23 54 0 0 chr21 11034863 11034900 -23872670 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr21 11034937 11034975 -23872595 + AT_rich Low_complexity Low_complexity 1 38 0 592 311 69 19 chr21 11035378 11035638 -23871932 + LTR16C LTR ERVL 210 482 -9 21 57 0 0 chr21 11035900 11035935 -23871635 + AT_rich Low_complexity Low_complexity 1 35 0 666 276 49 11 chr21 11038401 11038586 -23868984 + MER58A DNA MER1_type 21 212 -12 306 0 0 0 chr21 11039162 11039196 -23868374 + (TG)n Simple_repeat Simple_repeat 2 35 0 2354 143 46 7 chr21 11039861 11040273 -23867297 + MSTA LTR MaLR 1 428 0 1335 233 32 32 chr21 11041356 11041729 -23865841 + MLT1A2 LTR MaLR 1 373 -1 1860 147 14 0 chr21 11041822 11042114 -23865456 + AluJb SINE Alu 1 296 -16 441 145 0 0 chr21 11042128 11042204 -23865366 + (GGAA)n Simple_repeat Simple_repeat 2 77 0 1663 183 7 7 chr21 11042433 11042734 -23864836 + AluJb SINE Alu 1 301 -11 22 0 0 0 chr21 11045884 11045906 -23861664 + AT_rich Low_complexity Low_complexity 1 22 0 1721 127 44 11 chr21 11045919 11046194 -23861376 - AluSg1 SINE Alu -25 284 1 24 32 0 0 chr21 11046380 11046411 -23861159 + AT_rich Low_complexity Low_complexity 1 31 0 234 200 0 0 chr21 11046425 11046470 -23861100 + A-rich Low_complexity Low_complexity 1 45 0 366 325 0 34 chr21 11046727 11046844 -23860726 + L2 LINE L2 3191 3303 -10 2295 48 0 10 chr21 11047131 11047443 -23860127 + AluY SINE Alu 1 311 0 1545 179 76 71 chr21 11048933 11049314 -23858256 - MSTA LTR MaLR 0 428 46 1418 98 54 5 chr21 11049315 11049539 -23858031 - LTR12 LTR ERV1 0 671 437 355 204 31 20 chr21 11049540 11049638 -23857932 - LTR30 LTR ERV1 -80 642 544 4253 123 57 29 chr21 11049638 11050573 -23856997 - pTR5 LTR ERV1 -413 2025 745 236 156 0 22 chr21 11050575 11050620 -23856950 - MSTA LTR MaLR -379 47 4 22 35 0 0 chr21 11050733 11050762 -23856808 + AT_rich Low_complexity Low_complexity 1 29 0 26 34 0 51 chr21 11051092 11051151 -23856419 + AT_rich Low_complexity Low_complexity 1 56 0 12085 214 42 28 chr21 11052586 11056361 -23851209 + L1MA7 LINE L1 2038 5757 -770 279 0 0 0 chr21 11056361 11056392 -23851178 + (TA)n Simple_repeat Simple_repeat 2 32 0 12085 214 42 28 chr21 11056392 11056532 -23851038 + L1MA7 LINE L1 5757 5894 -633 279 0 0 0 chr21 11056532 11056563 -23851007 + (CA)n Simple_repeat Simple_repeat 2 32 0 12085 214 42 28 chr21 11056563 11057009 -23850561 + L1MA7 LINE L1 5894 6480 -47 28 0 0 0 chr21 11057009 11057037 -23850533 + AT_rich Low_complexity Low_complexity 1 28 0 612 315 55 0 chr21 11057066 11057339 -23850231 - L1M4 LINE L1 -1310 4836 4549 1605 126 102 0 chr21 11058311 11058589 -23848981 - AluSg SINE Alu 0 304 1 653 318 15 0 chr21 11058787 11058988 -23848582 - MER58A DNA MER1_type -20 204 1 49 52 0 0 chr21 11060373 11060450 -23847120 + AT_rich Low_complexity Low_complexity 1 77 0 22 80 0 0 chr21 11060519 11060569 -23847001 + AT_rich Low_complexity Low_complexity 1 50 0 315 199 45 45 chr21 11060662 11060838 -23846732 + (CATATA)n Simple_repeat Simple_repeat 5 180 0 481 249 13 80 chr21 11060862 11060997 -23846573 + L1M4 LINE L1 4738 4854 -1292 2288 91 0 3 chr21 11060997 11061294 -23846276 - AluSc SINE Alu -13 296 1 481 249 13 80 chr21 11061294 11061383 -23846187 + L1M4 LINE L1 4854 4947 -1199 422 270 0 35 chr21 11061420 11061594 -23845976 + L1M4 LINE L1 4964 5131 -1015 291 246 8 98 chr21 11061901 11062023 -23845547 + L1 LINE L1 938 1048 -5801 4288 246 49 32 chr21 11062351 11065343 -23842227 + L1PA15-16 LINE L1 1268 4312 -2537 1878 199 55 38 chr21 11065333 11065911 -23841659 + L1 LINE L1 4937 5524 -1324 360 147 27 40 chr21 11065942 11066017 -23841553 + L1MA3 LINE L1 3601 3674 -3891 1775 242 17 19 chr21 11066018 11066730 -23840840 + L1MA3 LINE L1 3676 4416 -3149 3437 192 21 0 chr21 11066697 11067409 -23840161 + L1MA3 LINE L1 5707 6433 -1132 28 48 0 0 chr21 11067409 11067451 -23840119 + AT_rich Low_complexity Low_complexity 1 42 0 4096 174 21 28 chr21 11067477 11068296 -23839274 + L1MA3 LINE L1 6394 7271 -453 1969 144 0 30 chr21 11068296 11068601 -23838969 + AluSx SINE Alu 1 296 -16 4096 174 21 28 chr21 11068601 11069046 -23838524 + L1MA3 LINE L1 7271 7718 -6 23 0 0 0 chr21 11069046 11069069 -23838501 + AT_rich Low_complexity Low_complexity 1 23 0 996 181 5 0 chr21 11069075 11069263 -23838307 + L1M1 LINE L1 5106 5294 -2271 1355 160 15 15 chr21 11069263 11069523 -23838047 + L1PA16 LINE L1 5898 6165 -1 1416 241 94 2 chr21 11069551 11069953 -23837617 + L1MD2 LINE L1 5794 6232 -127 677 259 16 16 chr21 11069945 11070138 -23837432 - L1MC1 LINE L1 -312 6021 5829 2580 177 65 17 chr21 11070165 11070702 -23836868 - L1MC2 LINE L1 -463 5881 5319 745 238 0 24 chr21 11070714 11070882 -23836688 - AluJo SINE Alu -147 165 2 461 252 16 0 chr21 11070882 11071009 -23836561 - L1MC2 LINE L1 -811 5335 5207 1805 161 0 3 chr21 11071093 11071378 -23836192 - AluJb SINE Alu -18 294 11 23 33 0 0 chr21 11072726 11072756 -23834814 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr21 11072965 11072995 -23834575 + AT_rich Low_complexity Low_complexity 1 30 0 1219 185 8 44 chr21 11073228 11073477 -23834093 - MER34 LTR ERV1 -3 539 300 1804 188 43 16 chr21 11074004 11074377 -23833193 - MER61D LTR ERV1 -5 496 114 12787 118 54 17 chr21 11074421 11076513 -23831057 - MER61D-int LTR ERV1 -4 5213 3045 1912 114 59 0 chr21 11076522 11076795 -23830775 + AluSc SINE Alu 1 289 -20 610 160 19 0 chr21 11076808 11076914 -23830656 - MER61D-int LTR ERV1 -2711 2506 2399 378 198 0 90 chr21 11076913 11077024 -23830546 - MER61D-int LTR ERV1 -4915 302 202 296 183 85 0 chr21 11077036 11077118 -23830452 - MER61D-int LTR ERV1 -6478 518 430 1083 101 5 45 chr21 11077153 11077351 -23830219 - MER61D-int LTR ERV1 -2827 2390 2201 675 167 83 18 chr21 11077333 11077501 -23830069 - MER61D-int LTR ERV1 -3340 4197 4019 3063 160 18 10 chr21 11077468 11078228 -23829342 - MER61D-int LTR ERV1 -3577 3555 1215 1639 143 33 9 chr21 11078245 11078672 -23828898 - MER61D-int LTR ERV1 -4401 2644 467 339 192 27 0 chr21 11078716 11078789 -23828781 - MADE1 DNA Mariner 0 80 6 866 226 14 36 chr21 11078796 11079068 -23828502 - MER61D-int LTR ERV1 -4824 393 200 546 282 0 45 chr21 11079177 11079333 -23828237 - MER61D-int LTR ERV1 -5067 150 2 2040 162 37 21 chr21 11079333 11079715 -23827855 - MER61D LTR ERV1 0 501 114 1915 122 28 10 chr21 11080683 11080971 -23826599 - AluSg SINE Alu -17 293 1 203 311 118 8 chr21 11082147 11082266 -23825304 + MIR SINE MIR 130 261 -1 448 229 37 9 chr21 11082377 11082486 -23825084 - MER104 DNA MER2_type -1778 117 6 1307 230 68 39 chr21 11082791 11083174 -23824396 + MSTD LTR MaLR 3 396 0 38 22 0 0 chr21 11083184 11083229 -23824341 + AT_rich Low_complexity Low_complexity 1 45 0 1575 266 68 28 chr21 11083327 11083827 -23823743 - MLT2B1 LTR ERVL 0 520 1 617 347 34 8 chr21 11084201 11084466 -23823104 - L2 LINE L2 -148 3165 2894 469 301 37 0 chr21 11084571 11084707 -23822863 - L2 LINE L2 -577 2737 2597 292 213 87 79 chr21 11084737 11084864 -23822706 + L2 LINE L2 1924 2051 -1263 1046 186 0 26 chr21 11084920 11085113 -23822457 + MER20 DNA MER1_type 32 219 0 1307 321 67 36 chr21 11085123 11085798 -23821772 + L2 LINE L2 2083 2778 -536 2104 96 39 0 chr21 11085817 11086099 -23821471 + AluSc SINE Alu 1 293 -16 198 0 0 0 chr21 11087479 11087501 -23820069 + (TTTC)n Simple_repeat Simple_repeat 2 23 0 183 80 0 0 chr21 11087851 11087876 -23819694 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 23 33 0 0 chr21 11088086 11088116 -23819454 + AT_rich Low_complexity Low_complexity 1 30 0 2156 181 11 32 chr21 11088143 11088586 -23818984 - L1MC1 LINE L1 0 6333 5900 2077 156 34 0 chr21 11088605 11088963 -23818607 - L1MC1 LINE L1 -508 5825 5456 3120 180 37 17 chr21 11088963 11089635 -23817935 + MER50 LTR ERV1 1 711 -23 186 43 0 0 chr21 11090662 11090685 -23816885 + (TTG)n Simple_repeat Simple_repeat 1 23 0 703 133 6 155 chr21 11090685 11090783 -23816787 - LTR57 LTR ERVL -102 309 198 1565 186 72 0 chr21 11090783 11091074 -23816496 - AluJo SINE Alu 0 312 1 1271 179 107 4 chr21 11091084 11091364 -23816206 - AluJb SINE Alu -3 309 1 703 133 6 155 chr21 11091364 11091435 -23816135 - LTR57 LTR ERVL -223 188 156 6455 39 0 0 chr21 11091706 11092484 -23815086 + L1PA5 LINE L1 5377 6154 0 215 165 0 47 chr21 11092755 11092840 -23814730 + (TA)n Simple_repeat Simple_repeat 2 82 0 200 227 0 0 chr21 11093132 11093176 -23814394 + A-rich Low_complexity Low_complexity 3 46 0 25 0 0 0 chr21 11094692 11094717 -23812853 + AT_rich Low_complexity Low_complexity 1 25 0 2093 96 27 3 chr21 11094815 11095108 -23812462 + AluSc SINE Alu 1 300 -9 1718 181 7 0 chr21 11096233 11096526 -23811044 + AluJb SINE Alu 1 295 -17 1493 160 48 13 chr21 11096955 11097268 -23810302 + L1MA10 LINE L1 6008 6331 -3 322 321 89 32 chr21 11097715 11097905 -23809665 + MIR SINE MIR 31 231 -31 23 0 0 0 chr21 11097916 11097939 -23809631 + AT_rich Low_complexity Low_complexity 1 23 0 673 196 8 8 chr21 11098139 11098272 -23809298 + FLAM_A SINE Alu 1 133 0 27 0 0 0 chr21 11098273 11098300 -23809270 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr21 11098373 11098401 -23809169 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr21 11099363 11099398 -23808172 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr21 11099784 11099814 -23807756 + AT_rich Low_complexity Low_complexity 1 30 0 2549 142 5 11 chr21 11099814 11100256 -23807314 - L1MA1 LINE L1 -4 6298 5860 294 236 110 0 chr21 11100261 11100388 -23807182 - L1 LINE L1 -1650 5915 5775 3727 101 11 2 chr21 11100382 11100928 -23806642 - L1MA2 LINE L1 -447 5857 5307 1356 75 11 11 chr21 11100938 11101112 -23806458 - AluSp SINE Alu -139 174 1 4187 52 0 6 chr21 11101113 11101632 -23805938 - HERVL LTR ERVL -1681 3973 3458 5273 227 24 5 chr21 11101632 11102692 -23804878 - L1 LINE L1 -6034 1531 452 359 160 0 130 chr21 11102694 11102794 -23804776 - L1 LINE L1 -7375 190 104 438 75 62 0 chr21 11102806 11102886 -23804684 - L1PA14 LINE L1 0 6161 6077 1017 259 115 26 chr21 11103072 11103462 -23804108 + MER57B LTR ERV1 10 434 0 1594 197 0 28 chr21 11104968 11105288 -23802282 - AluSx SINE Alu -1 311 1 181 140 60 60 chr21 11105758 11105808 -23801762 + MER5B DNA MER1_type 85 134 -44 2126 202 49 21 chr21 11107635 11107741 -23799829 + Tigger6a DNA MER2_type 2 104 -1493 1746 175 70 14 chr21 11107741 11108096 -23799474 - THE1C LTR MaLR 0 375 1 9856 117 43 5 chr21 11108096 11109617 -23797953 - THE1C-int LTR MaLR 0 1580 1 1784 161 68 8 chr21 11109618 11109971 -23797599 - THE1C LTR MaLR -1 374 1 2126 202 49 21 chr21 11109971 11110391 -23797179 + Tigger6a DNA MER2_type 103 546 -537 1798 141 3 56 chr21 11110468 11110774 -23796796 - AluSx SINE Alu -22 290 1 915 193 75 102 chr21 11110775 11111080 -23796490 + Tigger6 DNA MER2_type 1076 1372 -225 22 35 0 0 chr21 11111508 11111537 -23796033 + AT_rich Low_complexity Low_complexity 1 29 0 2063 141 19 42 chr21 11112077 11112116 -23795454 + MER4A LTR ERV1 1 425 -239 1833 137 21 45 chr21 11112116 11112559 -23795011 + MER4A LTR ERV1 40 425 -239 532 239 36 24 chr21 11112574 11112741 -23794829 + MER4C LTR ERV1 277 445 -20 204 40 0 0 chr21 11114007 11114032 -23793538 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2214 122 0 0 chr21 11114063 11114366 -23793204 - AluSq SINE Alu -10 303 1 258 32 0 0 chr21 11114590 11114621 -23792949 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 3711 28 0 0 chr21 11114621 11115058 -23792512 - L1PA4 LINE L1 -11 6144 5708 24 0 0 0 chr21 11115669 11115693 -23791877 + AT_rich Low_complexity Low_complexity 1 24 0 268 141 14 42 chr21 11116281 11116302 -23791268 + (CATA)n Simple_repeat Simple_repeat 2 22 -48 1112 196 130 57 chr21 11116302 11116762 -23790808 + LTR54B LTR ERV1 2 495 -3 268 141 14 42 chr21 11116762 11116811 -23790759 + (CATA)n Simple_repeat Simple_repeat 22 70 0 27 0 0 0 chr21 11117908 11117935 -23789635 + AT_rich Low_complexity Low_complexity 1 27 0 1246 289 60 0 chr21 11117963 11118426 -23789144 + L1MEc LINE L1 472 962 -5434 243 253 21 32 chr21 11118430 11118525 -23789045 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 370 217 133 28 chr21 11118584 11118727 -23788843 - MER34 LTR ERV1 -5 537 380 231 261 72 18 chr21 11118794 11118905 -23788665 - LTR48 LTR ERV1 -306 481 365 781 253 112 24 chr21 11119064 11119360 -23788210 + L1MD3 LINE L1 6671 6992 -1003 1761 174 91 3 chr21 11119361 11119722 -23787848 - LTR48 LTR ERV1 0 787 395 3605 163 34 10 chr21 11119888 11120558 -23787012 - L1PA16 LINE L1 -3 6163 5478 562 214 110 19 chr21 11120703 11120857 -23786713 + MSTB2 LTR MaLR 1 168 -289 294 73 0 0 chr21 11120977 11121018 -23786552 + (TG)n Simple_repeat Simple_repeat 1 41 0 1948 157 44 46 chr21 11121336 11121454 -23786116 - MER61D LTR ERV1 0 501 384 2278 98 0 16 chr21 11121454 11121771 -23785799 + AluSx SINE Alu 1 312 0 1948 157 44 46 chr21 11121771 11122041 -23785529 - MER61D LTR ERV1 -117 384 114 633 221 59 0 chr21 11122651 11122810 -23784760 - MSTC LTR MaLR -229 167 1 376 222 56 37 chr21 11123103 11123211 -23784359 + MER58 DNA MER1_type 1 110 -105 225 188 83 0 chr21 11123223 11123271 -23784299 + MER58 DNA MER1_type 2369 2420 0 232 360 126 18 chr21 11124618 11124729 -23782841 - MER115 DNA AcHobo -293 400 278 208 169 0 56 chr21 11125123 11125194 -23782376 + (TA)n Simple_repeat Simple_repeat 2 68 0 186 71 0 0 chr21 11125631 11125659 -23781911 + (CAT)n Simple_repeat Simple_repeat 2 29 0 201 39 0 0 chr21 11125763 11125789 -23781781 + (TTA)n Simple_repeat Simple_repeat 3 28 0 6966 57 3 1 chr21 11125789 11127260 -23780310 - L1PA5 LINE L1 -18 6136 4662 954 255 65 47 chr21 11127693 11128077 -23779493 + L1M4 LINE L1 4383 4773 -1373 368 291 45 62 chr21 11128272 11128384 -23779186 + L1M4 LINE L1 4845 4957 -1189 204 67 0 0 chr21 11128384 11128414 -23779156 + (TG)n Simple_repeat Simple_repeat 2 31 0 368 291 45 62 chr21 11128414 11128545 -23779025 + L1M4 LINE L1 4957 5084 -1062 1656 232 56 16 chr21 11128668 11129112 -23778458 - MLT1C LTR MaLR 0 467 6 205 339 0 16 chr21 11129225 11129287 -23778283 + L2 LINE L2 3236 3296 -17 455 215 0 0 chr21 11129287 11129366 -23778204 - Tigger7 DNA MER2_type -10 2477 2399 1292 217 27 0 chr21 11129372 11129630 -23777940 - Tigger7 DNA MER2_type -2221 266 2 225 0 0 0 chr21 11129633 11129658 -23777912 + (TG)n Simple_repeat Simple_repeat 2 26 0 287 272 65 60 chr21 11129855 11130039 -23777531 - L2 LINE L2 -66 3247 3063 1185 207 67 41 chr21 11130240 11130641 -23776929 + MLT2B1 LTR ERVL 3 480 -40 285 75 0 0 chr21 11130646 11130686 -23776884 + (TCTA)n Simple_repeat Simple_repeat 1 40 0 259 136 17 34 chr21 11130686 11130745 -23776825 + MLT2B1 LTR ERVL 458 515 -5 939 105 0 0 chr21 11131398 11131522 -23776048 - AluSq/x SINE Alu -189 124 1 1126 176 5 50 chr21 11132258 11132347 -23775223 - MER2 DNA MER2_type -133 211 120 2229 79 0 0 chr21 11132347 11132638 -23774932 + AluY SINE Alu 1 291 -20 1126 176 5 50 chr21 11132638 11132769 -23774801 - MER2 DNA MER2_type -224 120 1 6128 155 48 20 chr21 11133374 11133814 -23773756 + Tigger3b DNA MER2_type 21 448 -2580 1897 113 0 90 chr21 11133814 11134158 -23773412 + AluSq SINE Alu 1 313 0 6128 155 48 20 chr21 11134158 11134672 -23772898 + Tigger3b DNA MER2_type 448 947 -2081 2356 97 7 0 chr21 11134672 11134980 -23772590 - AluSg SINE Alu 0 310 1 527 0 16 0 chr21 11134990 11135053 -23772517 + (TAGA)n Simple_repeat Simple_repeat 4 67 0 6128 155 48 20 chr21 11135053 11135265 -23772305 + Tigger3b DNA MER2_type 955 1231 0 1300 198 0 0 chr21 11135527 11135754 -23771816 + AluJo SINE Alu 3 229 -83 2042 57 0 0 chr21 11136326 11136590 -23770980 + L1PA7 LINE L1 5891 6154 0 23 68 0 0 chr21 11136746 11136790 -23770780 + AT_rich Low_complexity Low_complexity 1 44 0 198 0 0 0 chr21 11137273 11137295 -23770275 + (TA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr21 11137523 11137544 -23770026 + AT_rich Low_complexity Low_complexity 1 21 0 40 49 0 0 chr21 11137941 11138002 -23769568 + AT_rich Low_complexity Low_complexity 1 61 0 265 296 0 0 chr21 11138677 11138748 -23768822 + GA-rich Low_complexity Low_complexity 2 72 0 249 136 45 15 chr21 11139074 11139140 -23768430 + (CTATT)n Simple_repeat Simple_repeat 2 69 0 21 0 0 0 chr21 11139527 11139548 -23768022 + AT_rich Low_complexity Low_complexity 1 21 0 2241 96 0 0 chr21 11139869 11140160 -23767410 - AluSg SINE Alu -19 291 1 5966 37 0 0 chr21 11140237 11140946 -23766624 + L1PA3 LINE L1 5445 6153 -2 28 29 0 0 chr21 11141315 11141350 -23766220 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr21 11141456 11141494 -23766076 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr21 11141843 11141866 -23765704 + AT_rich Low_complexity Low_complexity 1 23 0 377 323 64 11 chr21 11142656 11142931 -23764639 + L1MC/D LINE L1 5338 5618 -605 21 0 0 0 chr21 11144434 11144455 -23763115 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 11144799 11144821 -23762749 + AT_rich Low_complexity Low_complexity 1 22 0 210 176 0 0 chr21 11145651 11145702 -23761868 + (TAA)n Simple_repeat Simple_repeat 2 52 0 203 179 0 0 chr21 11145754 11145793 -23761777 + T-rich Low_complexity Low_complexity 6 44 0 1338 191 108 18 chr21 11147804 11148139 -23759431 - MLT1A1 LTR MaLR 0 365 1 499 141 0 0 chr21 11148391 11148469 -23759101 - MADE1 DNA Mariner 0 80 3 34 24 0 0 chr21 11150227 11150268 -23757302 + AT_rich Low_complexity Low_complexity 1 41 0 279 186 17 0 chr21 11150349 11150408 -23757162 + GA-rich Low_complexity Low_complexity 3 62 0 1029 162 16 5 chr21 11150408 11150599 -23756971 + L1MA1 LINE L1 6019 6211 -91 299 151 23 23 chr21 11150691 11150777 -23756793 + GA-rich Low_complexity Low_complexity 3 88 0 26639 51 3 2 chr21 11150811 11155024 -23752546 + L1PA5 LINE L1 1938 6154 0 1921 140 10 3 chr21 11155227 11155520 -23752050 + AluSx SINE Alu 1 295 -17 243 146 0 0 chr21 11155520 11155561 -23752009 + (TA)n Simple_repeat Simple_repeat 2 42 0 1307 221 5 59 chr21 11155810 11156336 -23751234 + MLT1E2 LTR MaLR 1 490 -15 21 0 0 0 chr21 11156737 11156758 -23750812 + AT_rich Low_complexity Low_complexity 1 21 0 2472 56 0 6 chr21 11157893 11158214 -23749356 - L1PA5 LINE L1 -4 6150 5832 27 0 0 0 chr21 11159347 11159374 -23748196 + AT_rich Low_complexity Low_complexity 1 27 0 2472 45 0 0 chr21 11159701 11159991 -23747579 + AluY SINE Alu 17 306 -5 2294 72 0 13 chr21 11161480 11161787 -23745783 - AluY SINE Alu -8 303 1 33 0 0 0 chr21 11161991 11162024 -23745546 + AT_rich Low_complexity Low_complexity 1 33 0 294 194 50 58 chr21 11162054 11162210 -23745360 - L1ME LINE L1 -267 5854 5689 4202 176 6 14 chr21 11162260 11163039 -23744531 - L1PA16 LINE L1 -7 6159 5387 10411 242 30 20 chr21 11163360 11166482 -23741088 - L1 LINE L1 -771 5375 2225 308 82 96 14 chr21 11166494 11166640 -23740930 + (TA)n Simple_repeat Simple_repeat 1 158 0 305 23 0 23 chr21 11166865 11166908 -23740662 + (TA)n Simple_repeat Simple_repeat 1 42 0 1174 171 3 96 chr21 11166908 11167254 -23740316 - L1PA15-16 LINE L1 -3948 2901 2587 501 274 95 22 chr21 11167296 11167475 -23740095 + MIR SINE MIR 45 236 -26 522 278 120 0 chr21 11167537 11167728 -23739842 - MER58C DNA MER1_type -1 214 1 309 354 24 51 chr21 11168516 11168810 -23738760 - HERVL LTR ERVL -3879 1775 1490 265 184 13 13 chr21 11171462 11171538 -23736032 + (TA)n Simple_repeat Simple_repeat 2 77 0 22 0 0 0 chr21 11171600 11171622 -23735948 + AT_rich Low_complexity Low_complexity 1 22 0 4715 137 17 0 chr21 11173767 11175165 -23732405 - L1PA12 LINE L1 0 6168 4802 1980 136 8 3 chr21 11175188 11175663 -23731907 + L1P4 LINE L1 4993 5469 -699 1195 242 20 0 chr21 11175659 11175952 -23731618 - L1 LINE L1 -3397 2749 2451 28 48 0 0 chr21 11177121 11177163 -23730407 + AT_rich Low_complexity Low_complexity 1 42 0 183 80 0 0 chr21 11177739 11177764 -23729806 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr21 11178714 11178743 -23728827 + AT_rich Low_complexity Low_complexity 1 29 0 23 97 0 0 chr21 11178825 11178897 -23728673 + AT_rich Low_complexity Low_complexity 1 72 0 1979 126 16 10 chr21 11179182 11179492 -23728078 - AluSx SINE Alu 0 312 1 33 0 0 0 chr21 11179616 11179649 -23727921 + AT_rich Low_complexity Low_complexity 1 33 0 1962 141 0 3 chr21 11181158 11181442 -23726128 + AluSx SINE Alu 5 287 -25 1720 241 13 13 chr21 11181725 11181925 -23725645 - MSTD LTR MaLR -12 384 182 1674 170 3 39 chr21 11181925 11182231 -23725339 + AluSx SINE Alu 1 295 -17 1720 241 13 13 chr21 11182231 11182412 -23725158 - MSTD LTR MaLR -213 183 3 1073 302 78 87 chr21 11182451 11183495 -23724075 - HAL1 LINE L1 -3 2504 1471 330 312 78 0 chr21 11183499 11183653 -23723917 - HAL1 LINE L1 -1042 1465 1300 480 252 81 58 chr21 11183639 11183897 -23723673 - L1MD2 LINE L1 -3 6356 6093 339 65 0 0 chr21 11183992 11184038 -23723532 + (TC)n Simple_repeat Simple_repeat 1 46 0 277 291 13 25 chr21 11185384 11185463 -23722107 + MIR SINE MIR 39 116 -92 21 0 0 0 chr21 11185714 11185735 -23721835 + AT_rich Low_complexity Low_complexity 1 21 0 530 285 45 14 chr21 11186604 11186825 -23720745 - L1ME1 LINE L1 -5 6161 5934 14412 30 0 0 chr21 11187194 11189687 -23717883 + L1PA3 LINE L1 3663 6155 0 1141 142 0 6 chr21 11191113 11191289 -23716281 + AluSg/x SINE Alu 132 306 -4 1319 280 42 62 chr21 11193378 11193956 -23713614 + MLT1E LTR MaLR 25 590 -3 2050 109 0 0 chr21 11194539 11194813 -23712757 + AluSg SINE Alu 1 274 -36 243 0 0 0 chr21 11194816 11194843 -23712727 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 204 436 8 8 chr21 11196267 11196384 -23711186 - L2 LINE L2 -2836 478 362 789 219 29 19 chr21 11197336 11197546 -23710024 - MLT1A1 LTR MaLR 0 365 154 1110 132 24 0 chr21 11197619 11197786 -23709784 + AluSc SINE Alu 127 297 -12 765 188 7 7 chr21 11197846 11197990 -23709580 - MLT1A1 LTR MaLR -217 148 5 22 0 0 0 chr21 11198546 11198568 -23709002 + AT_rich Low_complexity Low_complexity 1 22 0 326 291 80 40 chr21 11201686 11201837 -23705733 - L2 LINE L2 -1080 2234 2078 266 208 85 19 chr21 11201947 11202053 -23705517 + L1MA7 LINE L1 6178 6290 -1 285 197 0 0 chr21 11202137 11202198 -23705372 + (TA)n Simple_repeat Simple_repeat 1 61 0 24 32 0 0 chr21 11202206 11202237 -23705333 + AT_rich Low_complexity Low_complexity 1 31 0 362 109 0 16 chr21 11202237 11202301 -23705269 - L1MA3 LINE L1 0 6305 6243 1944 96 4 4 chr21 11202474 11202744 -23704826 - AluSc SINE Alu -39 270 1 2151 220 58 3 chr21 11202746 11203485 -23704085 - L1M3 LINE L1 -586 5582 4816 1554 188 0 36 chr21 11203527 11203836 -23703734 - AluSx SINE Alu -14 298 1 1569 201 59 39 chr21 11203836 11204394 -23703176 - L1M3 LINE L1 -1323 4823 4255 605 223 0 0 chr21 11204443 11204564 -23703006 + L1 LINE L1 4013 4133 -2013 301 271 72 16 chr21 11204770 11204972 -23702598 - MIR SINE MIR -26 236 3 4098 36 0 0 chr21 11206046 11206540 -23701030 - L1PA4 LINE L1 -3 6152 5659 769 111 86 0 chr21 11206613 11206730 -23700840 - THE1C LTR MaLR -248 127 1 4189 145 43 10 chr21 11206762 11207453 -23700117 - THE1C-int LTR MaLR -14 1566 853 273 57 0 0 chr21 11207595 11207630 -23699940 + (TAGA)n Simple_repeat Simple_repeat 1 35 0 2063 96 3 0 chr21 11207975 11208267 -23699303 + L1PA13 LINE L1 5871 6163 0 982 229 63 27 chr21 11208323 11208624 -23698946 + MER67C LTR ERV1 39 350 -360 1966 129 0 7 chr21 11208635 11208922 -23698648 + AluSx SINE Alu 1 285 -27 342 0 0 0 chr21 11208922 11208960 -23698610 + (CA)n Simple_repeat Simple_repeat 2 39 0 1804 185 36 0 chr21 11208995 11209351 -23698219 + MER67C LTR ERV1 342 710 0 22 56 0 0 chr21 11209594 11209630 -23697940 + AT_rich Low_complexity Low_complexity 1 36 0 31 68 0 0 chr21 11209639 11209698 -23697872 + AT_rich Low_complexity Low_complexity 1 59 0 905 208 119 27 chr21 11209698 11210123 -23697447 + LTR54 LTR ERV1 1 510 0 21 0 0 0 chr21 11211229 11211250 -23696320 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr21 11211973 11212015 -23695555 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr21 11212210 11212233 -23695337 + AT_rich Low_complexity Low_complexity 1 23 0 1716 229 37 17 chr21 11212793 11213199 -23694371 + L1PB1 LINE L1 16 429 -7136 283 226 12 36 chr21 11213327 11213411 -23694159 - Charlie8 DNA MER1_type -2262 155 74 12849 181 24 28 chr21 11213412 11215381 -23692189 + L1PB1 LINE L1 434 2392 -5173 1792 165 99 12 chr21 11215381 11215726 -23691844 - THE1C LTR MaLR 0 375 1 12849 181 24 28 chr21 11215726 11216244 -23691326 + L1PB1 LINE L1 2392 2911 -4654 1013 138 0 6 chr21 11216324 11216491 -23691079 + L1PB1 LINE L1 2918 3083 -4482 5957 159 10 4 chr21 11216486 11218148 -23689422 + L1PB1 LINE L1 5898 7570 0 1724 140 8 78 chr21 11218231 11218630 -23688940 + L1MA1 LINE L1 2914 3284 -4281 5166 164 23 14 chr21 11218628 11220116 -23687454 + L1MA1 LINE L1 5668 7168 -555 1995 130 42 45 chr21 11220116 11220469 -23687101 + THE1B LTR MaLR 1 352 -12 3511 110 22 4 chr21 11220470 11221017 -23686553 + L1MA1 LINE L1 7163 7719 -2 40 97 0 0 chr21 11221018 11221142 -23686428 + AT_rich Low_complexity Low_complexity 1 124 0 374 304 56 19 chr21 11222715 11222876 -23684694 - L2 LINE L2 -510 2804 2638 366 287 76 13 chr21 11224124 11224281 -23683289 - MLT1G LTR MaLR -1 589 423 428 305 15 15 chr21 11224542 11224673 -23682897 - MLT1G1 LTR MaLR -463 132 2 1117 146 5 0 chr21 11224875 11225074 -23682496 + L1PB1 LINE L1 1 200 -6663 3549 106 13 2 chr21 11225076 11226123 -23681447 + L1PB1 LINE L1 636 1830 -5033 3905 95 69 0 chr21 11226123 11226743 -23680827 - L1PBa LINE L1 -4327 2536 1874 9818 194 17 26 chr21 11226741 11227371 -23680199 + L1PB1 LINE L1 3589 4223 -2644 189 0 0 0 chr21 11227371 11227392 -23680178 + (CAA)n Simple_repeat Simple_repeat 1 21 0 9818 194 17 26 chr21 11227392 11228281 -23679289 + L1PB1 LINE L1 4223 5118 -1749 181 0 69 0 chr21 11228281 11228310 -23679260 + (TAAAA)n Simple_repeat Simple_repeat 2 32 0 9818 194 17 26 chr21 11228310 11230098 -23677472 + L1PB1 LINE L1 5118 6867 0 22 0 0 0 chr21 11230158 11230180 -23677390 + AT_rich Low_complexity Low_complexity 1 22 0 337 297 21 14 chr21 11230227 11230372 -23677198 + MLT2C2 LTR ERVL 3 148 -316 426 228 4 81 chr21 11230356 11230619 -23676951 + MLT2B1 LTR ERVL 151 482 -38 1225 213 52 21 chr21 11231946 11232069 -23675501 + AluJo SINE Alu 1 119 -193 189 0 0 0 chr21 11232069 11232090 -23675480 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 1225 213 52 21 chr21 11232090 11232252 -23675318 + AluJo SINE Alu 119 295 -17 584 124 0 7 chr21 11234547 11234652 -23672918 - L1P LINE L1 -735 5396 5296 6055 98 29 2 chr21 11236237 11237430 -23670140 + L1PA8 LINE L1 4944 6165 -7 22 56 0 0 chr21 11237518 11237554 -23670016 + AT_rich Low_complexity Low_complexity 1 36 0 1525 211 7 13 chr21 11238640 11238938 -23668632 - MLT2B3 LTR ERVL -35 519 224 1716 153 3 38 chr21 11239809 11240123 -23667447 - AluJo SINE Alu -9 303 1 216 167 62 21 chr21 11241107 11241155 -23666415 - L2 LINE L2 -3 3269 3220 277 62 42 0 chr21 11243120 11243168 -23664402 + (GA)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr21 11243277 11243299 -23664271 + AT_rich Low_complexity Low_complexity 1 22 0 1192 32 0 26 chr21 11244157 11244311 -23663259 - AluY SINE Alu -10 301 152 1760 336 70 11 chr21 11245197 11246084 -23661486 + L2 LINE L2 1315 2253 -1061 2242 158 71 45 chr21 11246164 11246432 -23661138 - LTR64 LTR ERVK -83 475 189 2261 103 0 0 chr21 11246432 11246742 -23660828 - AluSg SINE Alu 0 310 1 2242 158 71 45 chr21 11246742 11246936 -23660634 - LTR64 LTR ERVK -369 189 1 721 317 93 24 chr21 11246940 11247359 -23660211 + L2 LINE L2 2270 2717 -597 603 338 9 5 chr21 11247365 11247578 -23659992 - LTR16A LTR ERVL -6 444 231 338 340 82 22 chr21 11247788 11248020 -23659550 + L2 LINE L2 2716 2961 -353 258 175 48 0 chr21 11248129 11248192 -23659378 + (TCTA)n Simple_repeat Simple_repeat 2 67 0 882 143 153 0 chr21 11248334 11248530 -23659040 + L1MA3 LINE L1 6077 6302 -3 1852 162 10 3 chr21 11248872 11249181 -23658389 - AluJb SINE Alu -1 311 1 205 237 51 17 chr21 11249238 11249297 -23658273 + MER5A DNA MER1_type 69 129 -60 459 332 66 29 chr21 11249702 11249946 -23657624 + MIR SINE MIR 4 256 -6 201 342 18 44 chr21 11250337 11250451 -23657119 + L2 LINE L2 2863 2973 -340 28 48 0 0 chr21 11251016 11251058 -23656512 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr21 11251166 11251201 -23656369 + AT_rich Low_complexity Low_complexity 1 35 0 1949 68 64 4 chr21 11251419 11251712 -23655858 + AluY SINE Alu 1 309 0 678 161 0 0 chr21 11252129 11252247 -23655323 + L1PA13 LINE L1 5943 6060 -103 2218 134 28 8 chr21 11252259 11252682 -23654888 - LTR12 LTR ERV1 -259 1481 15 684 218 35 45 chr21 11252769 11253058 -23654512 - pTR5 LTR ERV1 -1410 1028 743 258 51 0 51 chr21 11253080 11253119 -23654451 - L1PA13 LINE L1 -103 6060 6024 1637 243 97 40 chr21 11253188 11253694 -23653876 + MLT2B3 LTR ERVL 20 554 0 1216 68 0 0 chr21 11253959 11254121 -23653449 - L1PA13 LINE L1 0 6163 6002 278 130 0 19 chr21 11254278 11254332 -23653238 + (CAT)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr21 11256633 11256655 -23650915 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr21 11257059 11257101 -23650469 + AT_rich Low_complexity Low_complexity 1 42 0 220 372 33 25 chr21 11257908 11258029 -23649541 + L2 LINE L2 3151 3272 0 973 47 79 0 chr21 11258445 11258572 -23648998 + MER85 DNA T2_type 1 137 -2 495 286 81 12 chr21 11259210 11259244 -23648326 + MIR SINE MIR 91 121 -141 423 0 0 0 chr21 11259244 11259291 -23648279 + (CA)n Simple_repeat Simple_repeat 2 48 0 495 286 81 12 chr21 11259291 11259417 -23648153 + MIR SINE MIR 121 262 0 21 0 0 0 chr21 11259626 11259647 -23647923 + AT_rich Low_complexity Low_complexity 1 21 0 39 22 0 0 chr21 11259787 11259833 -23647737 + AT_rich Low_complexity Low_complexity 1 46 0 35 0 0 0 chr21 11260299 11260334 -23647236 + AT_rich Low_complexity Low_complexity 1 35 0 388 174 47 34 chr21 11260359 11260508 -23647062 + (TA)n Simple_repeat Simple_repeat 1 151 0 2560 50 0 0 chr21 11260550 11260853 -23646717 + AluY SINE Alu 1 303 -8 198 145 12 60 chr21 11260895 11260978 -23646592 + (TA)n Simple_repeat Simple_repeat 2 80 0 383 207 39 56 chr21 11261002 11261062 -23646508 + (CATATA)n Simple_repeat Simple_repeat 3 62 -116 1743 156 32 27 chr21 11261062 11261433 -23646137 - THE1C LTR MaLR -2 373 1 383 207 39 56 chr21 11261433 11261551 -23646019 + (CATATA)n Simple_repeat Simple_repeat 62 178 0 470 208 45 19 chr21 11261436 11261590 -23645980 + (TA)n Simple_repeat Simple_repeat 2 159 0 1302 221 76 0 chr21 11261593 11261607 -23645963 - L1M2 LINE L1 -689 5623 5611 2109 82 14 0 chr21 11261607 11261925 -23645645 - AluY SINE Alu 0 322 1 1302 221 76 0 chr21 11261925 11262253 -23645317 - L1M2 LINE L1 -701 5611 5254 5639 133 25 24 chr21 11262271 11263289 -23644281 - L1MA2 LINE L1 0 7723 6704 4046 164 48 34 chr21 11263284 11264870 -23642700 - L1PA14 LINE L1 -211 5950 4333 7024 141 64 13 chr21 11264865 11266201 -23641369 - L1MA2 LINE L1 -4218 3347 1944 2195 110 0 3 chr21 11267755 11268054 -23639516 - AluSq SINE Alu -14 299 2 21 0 0 0 chr21 11268728 11268749 -23638821 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 11268900 11268928 -23638642 + AT_rich Low_complexity Low_complexity 1 28 0 947 106 0 7 chr21 11268971 11269113 -23638457 + L1PA13 LINE L1 6004 6144 -19 24 0 0 0 chr21 11270555 11270579 -23636991 + AT_rich Low_complexity Low_complexity 1 24 0 417 231 0 11 chr21 11270707 11270798 -23636772 + MLT1B LTR MaLR 83 172 -202 760 247 0 0 chr21 11270845 11271015 -23636555 + MLT1B LTR MaLR 204 373 -17 236 282 46 61 chr21 11271358 11271489 -23636081 + LTR67 LTR ERVL 428 556 -1 25 65 0 0 chr21 11271815 11271861 -23635709 + AT_rich Low_complexity Low_complexity 1 46 0 343 82 16 16 chr21 11272829 11272890 -23634680 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 1974 159 12 3 chr21 11275201 11275535 -23632035 + MER1B DNA MER1_type 1 337 0 294 220 11 11 chr21 11276800 11276891 -23630679 + (TA)n Simple_repeat Simple_repeat 2 92 0 35 24 0 0 chr21 11278060 11278102 -23629468 + AT_rich Low_complexity Low_complexity 1 42 0 339 355 47 28 chr21 11278136 11278347 -23629223 - L2 LINE L2 -9 3304 3090 2867 201 64 63 chr21 11278596 11278719 -23628851 - L1MA10 LINE L1 -11 6323 6202 1782 165 7 13 chr21 11278719 11279022 -23628548 - AluSx SINE Alu -7 305 5 2867 201 64 63 chr21 11279022 11279713 -23627857 - L1MA10 LINE L1 -132 6202 5508 1935 208 28 19 chr21 11280682 11281109 -23626461 - MSTB1 LTR MaLR -1 431 1 741 266 89 79 chr21 11281111 11281491 -23626079 - L1MC5 LINE L1 -939 7022 6639 22 35 0 0 chr21 11281607 11281636 -23625934 + AT_rich Low_complexity Low_complexity 1 29 0 1334 213 87 27 chr21 11282102 11282530 -23625040 + MLT1D LTR MaLR 3 497 -8 1660 123 77 39 chr21 11282741 11283026 -23624544 - AluSx SINE Alu -16 296 1 42 57 0 0 chr21 11283306 11283376 -23624194 + AT_rich Low_complexity Low_complexity 1 70 0 180 0 0 0 chr21 11283638 11283658 -23623912 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2024 122 7 0 chr21 11283660 11283948 -23623622 - AluSx SINE Alu -22 290 1 726 284 42 4 chr21 11284079 11284525 -23623045 - L1ME2 LINE L1 -179 5985 5470 1640 183 22 17 chr21 11284662 11285022 -23622548 - L1MA3 LINE L1 -3 6302 5941 1432 222 78 19 chr21 11285448 11285872 -23621698 - MLT1C LTR MaLR -2 465 17 578 305 125 22 chr21 11286200 11286567 -23621003 - L1ME4a LINE L1 -104 6017 5613 927 316 67 32 chr21 11287492 11287985 -23619585 - L2 LINE L2 0 3313 2804 2542 55 0 6 chr21 11288065 11288377 -23619193 - AluY SINE Alu -1 310 1 26 30 0 0 chr21 11288600 11288633 -23618937 + AT_rich Low_complexity Low_complexity 1 33 0 267 133 0 0 chr21 11288854 11288899 -23618671 + (TC)n Simple_repeat Simple_repeat 1 45 0 743 270 37 33 chr21 11288929 11289199 -23618371 + MLT1F1 LTR MaLR 294 564 -3 864 279 20 8 chr21 11289527 11289774 -23617796 - LTR40b LTR ERVL -8 454 205 1375 249 56 37 chr21 11289903 11290332 -23617238 + MLT1D LTR MaLR 69 505 0 2245 256 3 13 chr21 11290339 11290944 -23616626 + MLT1D-int LTR MaLR 8 606 -765 1170 284 47 109 chr21 11291094 11291817 -23615753 + MLT1D-int LTR MaLR 693 1370 -1 1480 241 39 52 chr21 11291823 11292263 -23615307 + MLT1D LTR MaLR 6 439 -66 520 281 44 0 chr21 11292315 11292475 -23615095 + MLT1-int LTR MaLR 444 610 -761 2459 47 0 0 chr21 11292951 11293249 -23614321 + AluY SINE Alu 1 298 -13 213 211 0 19 chr21 11293801 11293853 -23613717 + CT-rich Low_complexity Low_complexity 2 52 0 26 88 0 0 chr21 11294247 11294315 -23613255 + AT_rich Low_complexity Low_complexity 1 68 0 22 35 0 0 chr21 11294628 11294657 -23612913 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 11295490 11295511 -23612059 + AT_rich Low_complexity Low_complexity 1 21 0 2324 73 0 0 chr21 11295598 11295887 -23611683 - AluY SINE Alu -22 289 1 758 230 11 6 chr21 11298994 11299212 -23608358 - AluJb SINE Alu 0 312 134 810 301 41 36 chr21 11299720 11300004 -23607566 + L1M4 LINE L1 3138 3419 -2727 2282 96 0 10 chr21 11300004 11300316 -23607254 + AluSc SINE Alu 1 309 0 810 301 41 36 chr21 11300316 11300616 -23606954 + L1M4 LINE L1 3419 3728 -2418 2113 108 0 0 chr21 11300616 11300904 -23606666 - AluSg SINE Alu -22 288 1 810 301 41 36 chr21 11300904 11300978 -23606592 + L1M4 LINE L1 3728 3800 -2346 471 205 25 62 chr21 11301794 11301955 -23605615 - LTR41 LTR ERVL -616 157 3 735 272 58 18 chr21 11302091 11302418 -23605152 + L1M4 LINE L1 4488 4827 -1319 531 236 32 0 chr21 11302484 11302641 -23604929 + L1M4 LINE L1 5178 5339 -807 5870 127 34 4 chr21 11302647 11303554 -23604016 - L1P LINE L1 -1530 4616 3679 1106 115 6 0 chr21 11303554 11303728 -23603842 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 5870 127 34 4 chr21 11303728 11303756 -23603814 - L1P LINE L1 -2467 3679 3653 5977 108 9 14 chr21 11303758 11305162 -23602408 + L1PA10 LINE L1 4651 6037 -131 2224 69 45 0 chr21 11305162 11305452 -23602118 + AluY SINE Alu 1 303 -8 5977 108 9 14 chr21 11305452 11305584 -23601986 + L1PA10 LINE L1 6037 6168 0 28 0 0 0 chr21 11305584 11305612 -23601958 + AT_rich Low_complexity Low_complexity 1 28 0 1237 214 28 4 chr21 11305624 11305872 -23601698 + AluJo SINE Alu 42 295 -17 306 331 42 12 chr21 11307412 11307652 -23599918 + L1MC4a LINE L1 4790 5045 -1101 312 179 0 0 chr21 11307877 11307933 -23599637 - L1M2 LINE L1 -657 5643 5588 814 319 33 13 chr21 11307947 11308251 -23599319 + L1MC4a LINE L1 5276 5585 -2223 625 300 33 19 chr21 11308262 11308569 -23599001 + L1MC4a LINE L1 5616 5926 -1882 4060 95 19 38 chr21 11308833 11309499 -23598071 + L1MA1 LINE L1 5648 6301 -1 25 51 0 0 chr21 11309500 11309539 -23598031 + AT_rich Low_complexity Low_complexity 1 39 0 737 204 70 11 chr21 11309839 11310025 -23597545 - L1MB8 LINE L1 -2 6176 5980 9770 176 53 52 chr21 11310118 11312678 -23594892 - L1MA8 LINE L1 -247 6044 3483 194 62 31 0 chr21 11312678 11312710 -23594860 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 9770 176 53 52 chr21 11312710 11313387 -23594183 - L1MA8 LINE L1 -2808 3483 2808 1786 137 47 1 chr21 11313465 11313826 -23593744 - MER57B LTR ERV1 -4 430 1 461 158 8 45 chr21 11314034 11314167 -23593403 + CT-rich Low_complexity Low_complexity 3 130 0 23 33 0 0 chr21 11314953 11314983 -23592587 + AT_rich Low_complexity Low_complexity 1 30 0 343 365 95 21 chr21 11316583 11316909 -23590661 + HAL1 LINE L1 1389 1738 -769 1867 234 58 47 chr21 11317833 11318079 -23589491 + L1MB7 LINE L1 5392 5634 -532 201 74 0 0 chr21 11318079 11318106 -23589464 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1867 234 58 47 chr21 11318106 11318117 -23589453 + L1MB7 LINE L1 5634 5643 -523 2483 62 0 0 chr21 11318117 11318424 -23589146 - AluY SINE Alu -4 307 1 1867 234 58 47 chr21 11318424 11318918 -23588652 + L1MB7 LINE L1 5643 6162 -4 251 246 39 45 chr21 11319257 11319436 -23588134 + L1ME LINE L1 5263 5440 -681 878 275 68 56 chr21 11320001 11320425 -23587145 - MLT1E2 LTR MaLR -11 556 207 1967 132 17 0 chr21 11323012 11323301 -23584269 + AluSp SINE Alu 1 294 -19 21 0 0 0 chr21 11323767 11323788 -23583782 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr21 11326591 11326619 -23580951 + AT_rich Low_complexity Low_complexity 1 28 0 3619 39 2 0 chr21 11326619 11327060 -23580510 - L1PA4 LINE L1 -3 6152 5711 1149 124 22 5 chr21 11328601 11328786 -23578784 - MER61E LTR ERV1 -42 527 340 310 248 0 89 chr21 11328858 11328959 -23578611 - MER61E LTR ERV1 -379 190 99 417 252 24 39 chr21 11328962 11329089 -23578481 - LTR25 LTR ERV1 -438 356 232 231 36 0 0 chr21 11329636 11329664 -23577906 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 82 0 0 chr21 11330955 11331004 -23576566 + AT_rich Low_complexity Low_complexity 1 49 0 536 200 21 89 chr21 11331325 11331515 -23576055 + MLT1B LTR MaLR 81 257 -133 231 264 19 0 chr21 11331630 11331683 -23575887 + (CA)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr21 11332327 11332349 -23575221 + AT_rich Low_complexity Low_complexity 1 22 0 344 336 8 8 chr21 11332625 11332756 -23574814 - L3 LINE CR1 -484 1093 963 2101 117 0 37 chr21 11333036 11333361 -23574209 + AluSq SINE Alu 1 313 0 258 32 0 0 chr21 11335170 11335201 -23572369 + (TATG)n Simple_repeat Simple_repeat 2 32 0 2660 109 48 0 chr21 11335201 11335621 -23571949 - L1PA13 LINE L1 -7 6156 5717 279 282 40 35 chr21 11335674 11335848 -23571722 + L1M4 LINE L1 4906 5080 -1066 298 227 34 0 chr21 11335970 11336058 -23571512 + L1MC4 LINE L1 6613 6703 -1339 251 272 0 22 chr21 11336284 11336376 -23571194 - L1MC4 LINE L1 -1339 6703 6614 393 119 0 0 chr21 11336448 11336507 -23571063 - FLAM SINE Alu -5 128 70 5687 150 60 20 chr21 11336508 11337221 -23570349 + LOR1a-int LTR ERV1 612 1390 -6730 1503 115 0 5 chr21 11337221 11337430 -23570140 + AluSc SINE Alu 86 293 -16 5687 150 60 20 chr21 11337430 11337866 -23569704 + LOR1a-int LTR ERV1 1390 1807 -6313 15171 148 40 27 chr21 11337854 11338821 -23568749 + LOR1a-int LTR ERV1 1940 2893 -5227 1577 203 7 0 chr21 11338821 11339111 -23568459 + AluJb SINE Alu 5 296 -16 15171 148 40 27 chr21 11339111 11340594 -23566976 + LOR1a-int LTR ERV1 2893 4437 -3683 1995 118 3 10 chr21 11340594 11340890 -23566680 - AluSg SINE Alu -16 294 1 15171 148 40 27 chr21 11340890 11341410 -23566160 + LOR1a-int LTR ERV1 4437 4949 -3171 3396 195 5 8 chr21 11341409 11342029 -23565541 + LOR1a-int LTR ERV1 5447 6064 -2056 455 130 10 100 chr21 11342028 11342128 -23565442 + LOR1a-int LTR ERV1 8030 8120 0 2643 199 15 0 chr21 11342128 11342605 -23564965 + LOR1a LTR ERV1 1 484 -13 644 193 82 12 chr21 11342631 11342802 -23564768 + L1MB3 LINE L1 5991 6173 -10 21 36 0 0 chr21 11343806 11343834 -23563736 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 11344581 11344610 -23562960 + AT_rich Low_complexity Low_complexity 1 29 0 384 307 127 6 chr21 11345808 11345974 -23561596 - MER5A DNA MER1_type -1 188 3 36 62 0 0 chr21 11346182 11346246 -23561324 + AT_rich Low_complexity Low_complexity 1 64 0 369 0 0 0 chr21 11346469 11346510 -23561060 + (TG)n Simple_repeat Simple_repeat 2 42 0 2024 135 33 36 chr21 11347153 11347517 -23560053 - THE1B LTR MaLR -1 363 1 25 31 0 0 chr21 11347695 11347727 -23559843 + AT_rich Low_complexity Low_complexity 1 32 0 186 43 0 0 chr21 11347835 11347858 -23559712 + (CATA)n Simple_repeat Simple_repeat 2 24 0 200 98 0 24 chr21 11347872 11347913 -23559657 + (TAGA)n Simple_repeat Simple_repeat 3 42 0 477 151 5 43 chr21 11347931 11348116 -23559454 + (TAGA)n Simple_repeat Simple_repeat 3 180 0 202 240 20 0 chr21 11348154 11348204 -23559366 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 1076 206 118 0 chr21 11348224 11348452 -23559118 + MLT1D LTR MaLR 251 505 0 2118 119 3 7 chr21 11349996 11350306 -23557264 - AluSg SINE Alu -1 309 1 2329 178 9 19 chr21 11350398 11350830 -23556740 - MSTC LTR MaLR 0 428 1 853 92 40 6 chr21 11352117 11352291 -23555279 + (TA)n Simple_repeat Simple_repeat 1 180 0 208 167 19 19 chr21 11352282 11352336 -23555234 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 186 43 0 0 chr21 11352567 11352590 -23554980 + (TG)n Simple_repeat Simple_repeat 2 24 0 1913 140 64 20 chr21 11353626 11353984 -23553586 + THE1C LTR MaLR 2 375 0 32 75 0 0 chr21 11354822 11354889 -23552681 + AT_rich Low_complexity Low_complexity 1 67 0 249 180 33 0 chr21 11355987 11356048 -23551522 - L1MA10 LINE L1 -1 6333 6271 2234 96 0 0 chr21 11356060 11356340 -23551230 - AluSq SINE Alu -18 295 16 4373 194 28 48 chr21 11356350 11356370 -23551200 - L1MA10 LINE L1 -55 6279 6260 1291 197 3 65 chr21 11356370 11356695 -23550875 - AluJo SINE Alu -7 305 1 4373 194 28 48 chr21 11356695 11357782 -23549788 - L1MA10 LINE L1 -74 6260 5194 2308 143 43 38 chr21 11357782 11358200 -23549370 - MSTC LTR MaLR -8 420 1 749 222 6 0 chr21 11358200 11358380 -23549190 - L1MA10 LINE L1 -1706 4440 4260 256 175 35 0 chr21 11358757 11358814 -23548756 + (TATG)n Simple_repeat Simple_repeat 1 59 0 717 176 46 7 chr21 11359030 11359183 -23548387 - MLT1E2 LTR MaLR -1 504 346 1013 296 23 33 chr21 11359209 11359604 -23547966 - MLT1E2 LTR MaLR -235 391 1 210 37 0 0 chr21 11359779 11359806 -23547764 + (TCCC)n Simple_repeat Simple_repeat 2 28 0 1461 174 4 4 chr21 11359808 11360067 -23547503 - AluSx SINE Alu -53 259 1 250 24 0 49 chr21 11360074 11360115 -23547455 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1734 167 3 0 chr21 11360118 11360400 -23547170 - AluSq SINE Alu -30 283 1 21 0 0 0 chr21 11360641 11360662 -23546908 + AT_rich Low_complexity Low_complexity 1 21 0 229 308 0 26 chr21 11362365 11362443 -23545127 - MIR SINE MIR -121 141 66 324 310 38 38 chr21 11362510 11362694 -23544876 - MLT1E2 LTR MaLR -337 289 106 22 35 0 0 chr21 11362759 11362788 -23544782 + AT_rich Low_complexity Low_complexity 1 29 0 2267 84 0 10 chr21 11362971 11363270 -23544300 + AluSg1 SINE Alu 2 297 -12 2666 188 48 23 chr21 11363318 11364005 -23543565 - L1MA10 LINE L1 -2338 3808 3105 2741 185 32 4 chr21 11364032 11364594 -23542976 + L1 LINE L1 3742 4319 -1827 1131 280 22 55 chr21 11364817 11365327 -23542243 + MER90 LTR ERV1 107 599 -15 6260 121 39 18 chr21 11366187 11367236 -23540334 - MER11C LTR ERVK 0 1071 1 530 274 34 7 chr21 11368567 11368713 -23538857 - MER58B DNA MER1_type 0 341 192 636 290 31 0 chr21 11368861 11369023 -23538547 + MER58B DNA MER1_type 175 341 0 26 0 0 0 chr21 11369233 11369259 -23538311 + AT_rich Low_complexity Low_complexity 1 26 0 1726 123 6 88 chr21 11370240 11370558 -23537012 - MER4A LTR ERV1 -1 663 372 635 111 10 20 chr21 11370616 11370715 -23536855 - MER4A LTR ERV1 -566 98 1 3836 131 45 20 chr21 11370723 11371420 -23536150 - MER4A-int LTR ERV1 -4 6594 5881 8805 129 53 16 chr21 11371417 11373034 -23534536 - MER4A-int LTR ERV1 -1046 5552 3875 11413 122 151 117 chr21 11373027 11374816 -23532754 - MER4A-int LTR ERV1 -3118 3480 1754 2012 147 0 0 chr21 11374816 11375101 -23532469 - AluSg SINE Alu -25 285 1 11413 122 151 117 chr21 11375101 11375678 -23531892 - MER4A-int LTR ERV1 -4844 1754 1198 2177 112 0 0 chr21 11375678 11375973 -23531597 + AluSc SINE Alu 1 295 -14 11413 122 151 117 chr21 11375973 11376969 -23530601 - MER4A-int LTR ERV1 -5400 1198 1 1579 130 161 98 chr21 11376972 11377350 -23530220 - MER4A LTR ERV1 0 664 263 612 144 0 10 chr21 11377350 11377447 -23530123 - MER4A LTR ERV1 -566 98 3 22 35 0 0 chr21 11377460 11377489 -23530081 + AT_rich Low_complexity Low_complexity 1 29 0 47 0 0 0 chr21 11377555 11377602 -23529968 + AT_rich Low_complexity Low_complexity 1 47 0 7104 23 0 4 chr21 11377840 11378671 -23528899 - L1PA3 LINE L1 -5 6150 5323 465 200 11 0 chr21 11378790 11378880 -23528690 - MER46B DNA MER2_type 0 236 146 241 228 10 10 chr21 11378880 11378981 -23528589 + (TATATG)n Simple_repeat Simple_repeat 2 102 0 1656 159 4 0 chr21 11379037 11379308 -23528262 - MER46B DNA MER2_type -79 157 11 21 57 0 0 chr21 11379869 11379904 -23527666 + AT_rich Low_complexity Low_complexity 1 35 0 2091 102 6 42 chr21 11382646 11382959 -23524611 + AluSx SINE Alu 2 303 -9 23 0 0 0 chr21 11382999 11383022 -23524548 + AT_rich Low_complexity Low_complexity 1 23 0 192 77 0 0 chr21 11384791 11384817 -23522753 + (CATA)n Simple_repeat Simple_repeat 2 27 0 1819 128 0 43 chr21 11385143 11385448 -23522122 - AluSg SINE Alu -18 292 1 26 82 0 0 chr21 11387310 11387371 -23520199 + AT_rich Low_complexity Low_complexity 1 61 0 869 223 98 48 chr21 11387858 11388194 -23519376 + MER57A LTR ERV1 42 394 -9 1772 212 57 9 chr21 11388275 11388714 -23518856 - L1MB1 LINE L1 0 6168 5709 21 0 0 0 chr21 11388714 11388735 -23518835 + AT_rich Low_complexity Low_complexity 1 21 0 1279 39 0 0 chr21 11390455 11390610 -23516960 - AluY SINE Alu 0 311 157 37 0 0 0 chr21 11394535 11394572 -23512998 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr21 11394673 11394699 -23512871 + AT_rich Low_complexity Low_complexity 1 26 0 1985 111 7 0 chr21 11395913 11396193 -23511377 + AluSp SINE Alu 1 282 -31 242 93 0 23 chr21 11396196 11396239 -23511331 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 189 74 0 0 chr21 11396669 11396696 -23510874 + (CA)n Simple_repeat Simple_repeat 2 28 0 7716 98 24 9 chr21 11398743 11399888 -23507682 - L1PA7 LINE L1 -1196 4950 3789 6802 69 1 1 chr21 11399888 11401088 -23506482 + L1PA7 LINE L1 4955 6154 0 407 274 0 20 chr21 11401331 11401484 -23506086 + (TA)n Simple_repeat Simple_repeat 1 150 0 1541 185 7 16 chr21 11401724 11402032 -23505538 - AluJo SINE Alu -5 307 3 21 0 0 0 chr21 11402124 11402145 -23505425 + AT_rich Low_complexity Low_complexity 1 21 0 2035 150 0 0 chr21 11402977 11403277 -23504293 + AluSx SINE Alu 1 300 -12 305 216 33 0 chr21 11403781 11403934 -23503636 + (CATATA)n Simple_repeat Simple_repeat 2 159 0 363 307 67 22 chr21 11404138 11404363 -23503207 - MIR SINE MIR 0 262 28 1720 167 78 23 chr21 11404368 11404715 -23502855 - MSTC LTR MaLR -7 421 56 216 0 0 0 chr21 11404730 11404754 -23502816 + (TA)n Simple_repeat Simple_repeat 1 24 0 323 224 18 6 chr21 11404809 11404979 -23502591 + (TA)n Simple_repeat Simple_repeat 1 172 0 192 200 0 0 chr21 11405017 11405072 -23502498 + (TA)n Simple_repeat Simple_repeat 1 55 0 320 217 12 12 chr21 11405089 11405255 -23502315 + (TA)n Simple_repeat Simple_repeat 1 166 0 905 232 90 41 chr21 11405290 11405635 -23501935 + MLT1A1 LTR MaLR 1 362 -3 745 234 85 49 chr21 11405902 11406209 -23501361 + L1ME1 LINE L1 5571 5888 -278 23 54 0 0 chr21 11407037 11407074 -23500496 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr21 11408490 11408526 -23499044 + AT_rich Low_complexity Low_complexity 1 36 0 1587 228 37 21 chr21 11408746 11409123 -23498447 - MLT1B LTR MaLR -7 383 1 327 327 79 57 chr21 11409284 11409691 -23497879 - L1ME LINE L1 -368 5798 5383 234 262 48 0 chr21 11411100 11411184 -23496386 - L1MCa LINE L1 -5109 1317 1230 11246 191 23 9 chr21 11411328 11413495 -23494075 - Tigger4(Zombi) DNA MER2_type -533 2198 2 290 244 0 35 chr21 11413989 11414104 -23493466 + A-rich Low_complexity Low_complexity 3 113 0 2716 246 73 33 chr21 11414349 11414905 -23492665 + MER21B LTR ERV1 19 614 -249 1892 176 17 14 chr21 11414905 11415251 -23492319 + MER7A DNA MER2_type 1 345 -1 2716 246 73 33 chr21 11415251 11415451 -23492119 + MER21B LTR ERV1 614 805 -58 18247 197 38 11 chr21 11415599 11420213 -23487357 + L1M1 LINE L1 12 4754 -2811 2252 157 29 41 chr21 11420250 11420734 -23486836 + L1MA3 LINE L1 5823 6300 -5 434 266 43 14 chr21 11420805 11420944 -23486626 + L1M1 LINE L1 4918 5060 -2505 678 295 91 57 chr21 11420955 11421583 -23485987 + L1M1 LINE L1 5124 5772 -1793 2011 128 125 8 chr21 11422028 11422388 -23485182 + MSTA LTR MaLR 27 428 0 23 33 0 0 chr21 11423345 11423375 -23484195 + AT_rich Low_complexity Low_complexity 1 30 0 458 268 0 32 chr21 11423493 11423616 -23483954 + FLAM_A SINE Alu 5 123 -10 21 0 0 0 chr21 11425102 11425123 -23482447 + AT_rich Low_complexity Low_complexity 1 21 0 36 0 0 0 chr21 11425163 11425199 -23482371 + AT_rich Low_complexity Low_complexity 1 36 0 2090 128 3 3 chr21 11426416 11426722 -23480848 - AluSq SINE Alu -7 306 1 22 80 0 0 chr21 11427011 11427061 -23480509 + AT_rich Low_complexity Low_complexity 1 50 0 26 50 0 0 chr21 11427818 11427858 -23479712 + AT_rich Low_complexity Low_complexity 1 40 0 1457 168 118 3 chr21 11429295 11429616 -23477954 + MER46B DNA MER2_type 1 233 -3 350 56 0 19 chr21 11429862 11429916 -23477654 + (TG)n Simple_repeat Simple_repeat 1 53 0 1090 264 88 66 chr21 11430339 11431450 -23476120 - L1MCa LINE L1 -4328 2794 1442 3648 148 24 0 chr21 11431450 11432067 -23475503 + L1PA16 LINE L1 5526 6157 -9 797 219 16 16 chr21 11432074 11432257 -23475313 + AluJo SINE Alu 120 302 -10 694 233 67 78 chr21 11432261 11432592 -23474978 - L1MCa LINE L1 -4975 1448 1122 443 280 8 24 chr21 11432595 11432720 -23474850 - MER20 DNA MER1_type 0 219 97 487 246 34 77 chr21 11432804 11433011 -23474559 - L1MCa LINE L1 -5311 1112 915 290 252 67 22 chr21 11433498 11433633 -23473937 - L1MCa LINE L1 -6273 150 10 713 176 0 8 chr21 11433670 11433801 -23473769 + FLAM_C SINE Alu 9 138 -5 289 278 166 59 chr21 11433880 11434049 -23473521 + MIR SINE MIR 76 262 0 282 29 0 0 chr21 11434821 11434856 -23472714 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 2061 95 0 18 chr21 11434856 11435139 -23472431 - AluSg SINE Alu -32 278 1 720 0 0 0 chr21 11435612 11435692 -23471878 + (TA)n Simple_repeat Simple_repeat 1 80 0 198 0 0 0 chr21 11436085 11436107 -23471463 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 1875 109 0 76 chr21 11436109 11436413 -23471157 - AluSx SINE Alu -30 282 2 25 0 0 0 chr21 11436581 11436606 -23470964 + AT_rich Low_complexity Low_complexity 1 25 0 28 95 0 0 chr21 11436722 11436806 -23470764 + AT_rich Low_complexity Low_complexity 1 84 0 21 71 0 0 chr21 11436936 11436978 -23470592 + AT_rich Low_complexity Low_complexity 1 42 0 1018 164 130 105 chr21 11437911 11438264 -23469306 - MLT1A1 LTR MaLR 0 365 4 24 0 0 0 chr21 11438738 11438762 -23468808 + AT_rich Low_complexity Low_complexity 1 24 0 6491 68 16 0 chr21 11439080 11440223 -23467347 + L1PA7 LINE L1 4990 6146 -8 237 65 0 0 chr21 11441491 11441522 -23466048 + (GA)n Simple_repeat Simple_repeat 2 32 0 186 239 131 69 chr21 11442169 11442299 -23465271 + MER5A DNA MER1_type 30 167 -22 1340 151 104 53 chr21 11443315 11443672 -23463898 - THE1C LTR MaLR 0 375 1 8532 161 17 37 chr21 11443672 11445283 -23462287 - THE1C-int LTR MaLR 0 1580 3 1554 142 72 70 chr21 11445285 11445659 -23461911 - THE1C LTR MaLR 0 375 1 580 239 83 17 chr21 11446689 11446869 -23460701 + LTR47A LTR ERVL 261 452 0 606 257 145 54 chr21 11447097 11447393 -23460177 - MER57A LTR ERV1 -23 380 58 264 91 0 0 chr21 11447430 11447474 -23460096 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2243 80 7 0 chr21 11447476 11447764 -23459806 - AluY SINE Alu -21 290 1 22 88 0 0 chr21 11448276 11448333 -23459237 + AT_rich Low_complexity Low_complexity 1 57 0 30 27 0 0 chr21 11448431 11448468 -23459102 + AT_rich Low_complexity Low_complexity 1 37 0 249 211 0 0 chr21 11449653 11449710 -23457860 + (TA)n Simple_repeat Simple_repeat 2 58 0 24 32 0 0 chr21 11449716 11449747 -23457823 + AT_rich Low_complexity Low_complexity 1 31 0 1117 116 130 28 chr21 11450104 11450319 -23457251 - L1PA13 LINE L1 -4 6159 5923 22 56 0 0 chr21 11451220 11451256 -23456314 + AT_rich Low_complexity Low_complexity 1 36 0 985 294 59 17 chr21 11451370 11451885 -23455685 - L1MEc LINE L1 -4356 2040 1353 753 279 122 86 chr21 11452036 11453274 -23454296 - L1MEc LINE L1 -5063 1333 51 21 0 0 0 chr21 11453324 11453345 -23454225 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 11453642 11453664 -23453906 + AT_rich Low_complexity Low_complexity 1 22 0 2350 66 23 7 chr21 11453664 11453969 -23453601 + AluY SINE Alu 1 310 -1 23 0 0 0 chr21 11454029 11454052 -23453518 + AT_rich Low_complexity Low_complexity 1 23 0 38 89 0 0 chr21 11454216 11454317 -23453253 + AT_rich Low_complexity Low_complexity 1 101 0 22 0 0 0 chr21 11454776 11454798 -23452772 + AT_rich Low_complexity Low_complexity 1 22 0 223 244 0 0 chr21 11455037 11455082 -23452488 + MIR SINE MIR 154 198 -64 508 321 61 57 chr21 11455327 11455751 -23451819 + ERVL LTR ERVL 1510 1935 -3829 268 288 12 0 chr21 11456521 11456601 -23450969 + ERVL LTR ERVL 5206 5286 -478 25 31 0 0 chr21 11456695 11456727 -23450843 + AT_rich Low_complexity Low_complexity 1 32 0 449 236 111 29 chr21 11457271 11457422 -23450148 + MLT1G3 LTR MaLR 181 426 -169 1095 279 61 46 chr21 11457967 11458362 -23449208 + LTR40b LTR ERVL 4 404 -58 22 0 0 0 chr21 11458658 11458680 -23448890 + AT_rich Low_complexity Low_complexity 1 22 0 272 70 23 0 chr21 11459587 11459630 -23447940 + (TCTA)n Simple_repeat Simple_repeat 1 44 0 1179 173 89 0 chr21 11460082 11460330 -23447240 + L1MA4A LINE L1 6030 6299 -4 21 0 0 0 chr21 11461443 11461464 -23446106 + AT_rich Low_complexity Low_complexity 1 21 0 855 230 15 15 chr21 11462314 11462514 -23445056 - MER58A DNA MER1_type -15 209 10 6616 134 20 5 chr21 11462691 11464296 -23443274 + L1MA1 LINE L1 4662 6290 -12 22 0 0 0 chr21 11464299 11464321 -23443249 + AT_rich Low_complexity Low_complexity 1 22 0 2161 38 0 0 chr21 11464924 11465187 -23442383 + L1PA5 LINE L1 5886 6148 -6 294 314 59 42 chr21 11465736 11466073 -23441497 + L1ME LINE L1 3353 3695 -2451 25 51 0 0 chr21 11466465 11466504 -23441066 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr21 11466636 11466665 -23440905 + AT_rich Low_complexity Low_complexity 1 29 0 384 266 104 36 chr21 11466904 11467096 -23440474 - MER20 DNA MER1_type -14 205 1 233 0 62 0 chr21 11467679 11467711 -23439859 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 321 339 54 27 chr21 11467761 11467982 -23439588 + L1ME LINE L1 5386 5612 -558 22 94 0 0 chr21 11468094 11468158 -23439412 + AT_rich Low_complexity Low_complexity 1 64 0 1387 227 10 10 chr21 11469012 11469311 -23438259 + AluJo SINE Alu 3 301 -11 26 74 0 0 chr21 11469479 11469533 -23438037 + AT_rich Low_complexity Low_complexity 1 54 0 330 219 0 0 chr21 11469765 11469829 -23437741 - MER112 DNA MER1_type -37 223 160 299 313 100 13 chr21 11470092 11470242 -23437328 - MIR SINE MIR -10 252 90 374 187 88 8 chr21 11471709 11471837 -23435733 - MLT1F LTR MaLR -145 397 279 392 244 104 17 chr21 11472130 11472360 -23435210 - L1ME LINE L1 -5100 970 721 618 230 99 21 chr21 11472379 11472570 -23435000 - MLT1D LTR MaLR 0 505 300 225 0 0 0 chr21 11473128 11473153 -23434417 + (TG)n Simple_repeat Simple_repeat 2 26 0 312 27 0 0 chr21 11473404 11473441 -23434129 + (GA)n Simple_repeat Simple_repeat 1 37 0 306 0 0 0 chr21 11473440 11473474 -23434096 + (TG)n Simple_repeat Simple_repeat 2 35 0 744 205 0 0 chr21 11474473 11474698 -23432872 + (TA)n Simple_repeat Simple_repeat 1 225 0 1594 170 190 22 chr21 11475747 11476147 -23431423 - MLT1C LTR MaLR 0 467 1 1596 192 50 21 chr21 11477051 11477389 -23430181 + MER7A DNA MER2_type 1 346 0 192 327 0 0 chr21 11477791 11477843 -23429727 - MER5A DNA MER1_type -1 188 137 407 248 38 38 chr21 11478255 11478388 -23429182 + MER63D DNA MER1_type 310 442 -619 618 198 0 8 chr21 11478393 11478514 -23429056 + MER63D DNA MER1_type 659 778 -283 967 263 12 8 chr21 11478515 11478762 -23428808 - MLT1C LTR MaLR -1 466 219 1770 234 93 53 chr21 11478762 11479459 -23428111 - MER50 LTR ERV1 0 734 10 474 246 77 31 chr21 11479466 11479661 -23427909 - MLT1C LTR MaLR -246 221 18 398 384 54 22 chr21 11479861 11480231 -23427339 - L2 LINE L2 -48 3265 2884 2143 213 77 21 chr21 11481720 11482278 -23425292 - MER92B LTR ERV1 -47 589 1 351 312 43 0 chr21 11484502 11484595 -23422975 + MER5A DNA MER1_type 10 106 -83 288 298 7 57 chr21 11486260 11486401 -23421169 - MIR SINE MIR -3 259 126 378 345 27 27 chr21 11486858 11487006 -23420564 + L2 LINE L2 2567 2714 -600 492 282 24 12 chr21 11487090 11487260 -23420310 + HAL1 LINE L1 1572 1743 -764 301 221 0 96 chr21 11487816 11487952 -23419618 - LTR38B LTR ERV1 -487 123 1 845 335 49 31 chr21 11487995 11488443 -23419127 + HAL1 LINE L1 1770 2225 -282 3096 97 0 26 chr21 11488791 11488841 -23418729 - MLT2A1 LTR ERVL 0 444 394 657 69 0 0 chr21 11488841 11488928 -23418642 + (CA)n Simple_repeat Simple_repeat 2 88 0 3096 97 0 26 chr21 11488928 11489333 -23418237 - MLT2A1 LTR ERVL -50 394 1 22 0 0 0 chr21 11489354 11489376 -23418194 + AT_rich Low_complexity Low_complexity 1 22 0 1419 300 18 14 chr21 11489966 11490520 -23417050 + L1MB2 LINE L1 904 1459 -4682 347 250 0 0 chr21 11490524 11490604 -23416966 + L1MB2 LINE L1 3335 3414 -2796 1755 215 38 21 chr21 11490608 11491027 -23416543 - Tigger2a DNA MER2_type -8 426 1 1315 286 17 0 chr21 11491059 11491475 -23416095 + L1MB2 LINE L1 3413 3835 -2375 1655 219 19 27 chr21 11491531 11492007 -23415563 + L1MB2 LINE L1 4212 4683 -1527 2666 227 24 18 chr21 11492009 11492496 -23415074 + L1MB2 LINE L1 4711 5194 -1041 1875 150 26 83 chr21 11492496 11492882 -23414688 + THE1B LTR MaLR 1 364 0 2666 227 24 18 chr21 11492882 11493403 -23414167 + L1MB2 LINE L1 5194 6199 -36 2724 264 83 46 chr21 11493455 11493788 -23413782 + L1M4 LINE L1 15 334 -6208 1788 172 42 11 chr21 11493788 11494143 -23413427 - MER47A DNA MER2_type 0 366 1 2724 264 83 46 chr21 11494143 11495035 -23412535 + L1M4 LINE L1 334 1286 -5256 1442 276 75 43 chr21 11495250 11496458 -23411112 + L1M4 LINE L1 2058 3256 -3388 655 203 23 56 chr21 11496452 11496569 -23411001 + L1M4 LINE L1 5633 5741 -915 1944 158 18 12 chr21 11496569 11496904 -23410666 + MER1B DNA MER1_type 1 337 0 655 203 23 56 chr21 11496904 11497019 -23410551 + L1M4 LINE L1 5741 5858 -798 949 256 3 85 chr21 11497063 11497380 -23410190 - MLT1E2 LTR MaLR -335 291 1 315 0 0 0 chr21 11497394 11497429 -23410141 + (CA)n Simple_repeat Simple_repeat 2 36 0 1269 323 29 15 chr21 11498429 11498909 -23408661 + L1MDb LINE L1 151 637 -5906 1113 274 77 49 chr21 11498923 11499350 -23408220 + L1MDb LINE L1 702 1140 -5403 2490 241 50 34 chr21 11499489 11500417 -23407153 + L1MDb LINE L1 2192 3104 -3436 183 42 0 0 chr21 11500417 11500441 -23407129 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2248 83 0 0 chr21 11500448 11500783 -23406787 + AluSc SINE Alu 1 281 -28 2490 241 50 34 chr21 11500783 11501221 -23406349 + L1MDb LINE L1 3109 3583 -2957 22 56 0 0 chr21 11502578 11502614 -23404956 + AT_rich Low_complexity Low_complexity 1 36 0 453 305 6 18 chr21 11503322 11503489 -23404081 + MLT1H LTR MaLR 383 547 -2 2065 119 3 13 chr21 11505792 11506094 -23401476 + AluSx SINE Alu 1 299 -13 372 133 0 0 chr21 11506434 11506494 -23401076 + (CA)n Simple_repeat Simple_repeat 1 60 0 1916 165 16 19 chr21 11506612 11506988 -23400582 + THE1C LTR MaLR 1 375 0 437 266 59 40 chr21 11507141 11507363 -23400207 - L1M4 LINE L1 -3006 3140 2915 24 0 0 0 chr21 11507363 11507387 -23400183 + AT_rich Low_complexity Low_complexity 1 24 0 246 122 24 0 chr21 11507411 11507452 -23400118 - L1M4 LINE L1 -3325 2821 2780 520 305 77 26 chr21 11507528 11507800 -23399770 - L1ME3A LINE L1 -108 6062 5777 392 294 86 52 chr21 11507806 11508280 -23399290 - L1ME3A LINE L1 -493 5749 5255 395 210 101 0 chr21 11508472 11508591 -23398979 - L1 LINE L1 -1113 5033 4903 386 312 72 76 chr21 11508592 11509053 -23398517 - L1 LINE L1 -1227 4919 4461 376 280 84 51 chr21 11509060 11509488 -23398082 - L1 LINE L1 -1645 4501 4060 251 299 0 55 chr21 11509876 11510003 -23397567 - LTR16A1 LTR ERVL -92 365 246 1823 266 31 0 chr21 11510737 11511158 -23396412 + Tigger7 DNA MER2_type 1 434 -2053 3816 75 2 0 chr21 11512532 11513027 -23394543 + L1PA8 LINE L1 5649 6144 -28 403 74 0 0 chr21 11513027 11513081 -23394489 - U2 snRNA snRNA -134 54 1 396 0 0 0 chr21 11513105 11513149 -23394421 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1363 241 101 15 chr21 11513192 11513587 -23393983 + MLT1C LTR MaLR 37 465 -2 30 0 0 0 chr21 11513879 11513909 -23393661 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr21 11514112 11514137 -23393433 + AT_rich Low_complexity Low_complexity 1 25 0 473 250 14 0 chr21 11515303 11515447 -23392123 + (TATATG)n Simple_repeat Simple_repeat 6 151 0 234 322 0 0 chr21 11515449 11515539 -23392031 - L1MC4 LINE L1 -1339 6703 6614 262 267 47 0 chr21 11515491 11515577 -23391993 + L1MC4 LINE L1 6614 6703 -1339 213 175 0 0 chr21 11515579 11515619 -23391951 + (TA)n Simple_repeat Simple_repeat 2 41 0 306 73 0 0 chr21 11515619 11515660 -23391910 + (CA)n Simple_repeat Simple_repeat 2 42 0 2274 104 0 0 chr21 11515667 11515965 -23391605 - AluSg SINE Alu -12 298 1 2051 133 39 30 chr21 11516707 11517068 -23390502 - THE1B LTR MaLR 0 364 1 37 39 0 0 chr21 11517265 11517316 -23390254 + AT_rich Low_complexity Low_complexity 1 51 0 2003 141 36 33 chr21 11519107 11519468 -23388102 + THE1B LTR MaLR 1 362 -2 10638 123 4 7 chr21 11519470 11521054 -23386516 + THE1B-int LTR MaLR 1 1580 0 1703 147 48 65 chr21 11521054 11521409 -23386161 + THE1B LTR MaLR 1 349 -15 4322 183 18 46 chr21 11521472 11522106 -23385464 + L1MC2 LINE L1 5211 5807 -537 2142 114 0 0 chr21 11522106 11522396 -23385174 + AluSq SINE Alu 13 302 -11 4322 183 18 46 chr21 11522396 11522799 -23384771 + L1MC2 LINE L1 5807 6220 -124 258 167 44 123 chr21 11522798 11522912 -23384658 + L1MD3 LINE L1 7885 7989 -6 2562 116 13 51 chr21 11522988 11523461 -23384109 - L1MA3 LINE L1 0 6305 5851 2102 113 0 23 chr21 11523758 11524059 -23383511 - AluSg SINE Alu -16 294 1 22 0 0 0 chr21 11524371 11524393 -23383177 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr21 11525993 11526035 -23381535 + AT_rich Low_complexity Low_complexity 1 42 0 308 273 19 99 chr21 11527111 11527272 -23380298 - L1ME3 LINE L1 -47 6926 6779 1543 145 12 8 chr21 11527366 11527614 -23379956 + AluSx SINE Alu 46 294 -18 395 289 67 6 chr21 11527634 11527814 -23379756 - L1MC5 LINE L1 -472 7489 7299 216 0 0 0 chr21 11527848 11527872 -23379698 + (TG)n Simple_repeat Simple_repeat 2 25 0 328 304 85 64 chr21 11527906 11528472 -23379098 - L1MC5 LINE L1 -758 7203 6626 682 69 20 0 chr21 11528489 11528590 -23378980 + (TAGA)n Simple_repeat Simple_repeat 3 105 0 1878 129 14 7 chr21 11529216 11529502 -23378068 + AluSx SINE Alu 13 300 -12 30 59 0 0 chr21 11529505 11529556 -23378014 + AT_rich Low_complexity Low_complexity 1 51 0 1861 140 14 10 chr21 11529850 11530166 -23377404 + AluSx SINE Alu 1 312 0 1995 158 0 15 chr21 11530275 11530617 -23376953 + MER1B DNA MER1_type 1 337 0 691 251 33 40 chr21 11531485 11531770 -23375800 - L1MB8 LINE L1 -60 6120 5846 634 178 8 0 chr21 11531784 11531913 -23375657 - L1ME3 LINE L1 -202 6787 6658 2621 226 73 35 chr21 11532034 11532739 -23374831 - L1ME3 LINE L1 -636 6345 5668 1950 134 7 17 chr21 11532739 11533031 -23374539 + AluSx SINE Alu 1 289 -23 2621 226 73 35 chr21 11533031 11533355 -23374215 - L1ME3 LINE L1 -1313 5668 5248 2102 4 0 32 chr21 11533355 11533601 -23373969 - AluYa5 SINE Alu -4 307 70 2621 226 73 35 chr21 11533601 11533738 -23373832 - L1ME3 LINE L1 -1733 5248 5118 413 265 105 11 chr21 11533740 11533921 -23373649 - L1ME3 LINE L1 -1887 5070 4873 958 261 42 48 chr21 11533944 11534300 -23373270 - MLT1A1 LTR MaLR -2 363 10 475 309 7 13 chr21 11534310 11534459 -23373111 - L1ME3 LINE L1 -2103 4854 4707 2001 295 62 6 chr21 11534463 11535970 -23371600 - L1ME3 LINE L1 -5144 1711 9 228 250 0 0 chr21 11537256 11537312 -23370258 - L1ME LINE L1 -740 5430 5375 420 336 62 30 chr21 11537487 11537987 -23369583 - L1ME LINE L1 -985 5161 4646 24 53 0 0 chr21 11539925 11539963 -23367607 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr21 11540335 11540356 -23367214 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 11540587 11540615 -23366955 + AT_rich Low_complexity Low_complexity 1 28 0 524 238 32 101 chr21 11542775 11543023 -23364547 - MLT1A1-int LTR MaLR -34 1701 1471 340 304 38 71 chr21 11543311 11543577 -23363993 - MLT1A1-int LTR MaLR -490 881 625 1083 270 44 6 chr21 11543724 11544191 -23363379 - MLT1A1-int LTR MaLR -769 602 1 218 278 56 0 chr21 11544728 11544782 -23362788 - L2 LINE L2 0 3272 3216 642 136 35 0 chr21 11545146 11545315 -23362255 + (TCTA)n Simple_repeat Simple_repeat 4 178 0 246 328 0 0 chr21 11545751 11545815 -23361755 - MIR SINE MIR -62 146 83 22 56 0 0 chr21 11546280 11546316 -23361254 + AT_rich Low_complexity Low_complexity 1 36 0 588 368 43 13 chr21 11547239 11547636 -23359934 - HERV16 LTR ERVL -2268 3496 3088 303 146 27 36 chr21 11548364 11548474 -23359096 + (TTATA)n Simple_repeat Simple_repeat 3 111 0 225 0 0 0 chr21 11548495 11548520 -23359050 + (CA)n Simple_repeat Simple_repeat 2 26 0 1901 140 36 18 chr21 11548540 11548875 -23358695 - MER46B DNA MER2_type -4 232 17 246 351 0 0 chr21 11548898 11548972 -23358598 + (CATA)n Simple_repeat Simple_repeat 3 76 0 4171 112 69 21 chr21 11549045 11549794 -23357776 - LTR1 LTR ERV1 0 785 1 351 377 36 36 chr21 11550224 11550505 -23357065 - HERV16 LTR ERVL -3420 1576 1296 246 237 0 0 chr21 11550706 11550782 -23356788 + (TA)n Simple_repeat Simple_repeat 1 76 0 209 227 78 7 chr21 11550855 11551009 -23356561 + (TA)n Simple_repeat Simple_repeat 2 166 0 315 369 65 40 chr21 11551073 11551425 -23356145 - L2 LINE L2 -505 2809 2449 530 322 0 9 chr21 11551483 11551697 -23355873 + L1MC4 LINE L1 7689 7900 -142 548 350 25 37 chr21 11551750 11551988 -23355582 - L2 LINE L2 -786 2528 2294 2557 205 23 5 chr21 11551988 11552549 -23355021 - L1PB4 LINE L1 -2 6154 5584 548 350 25 37 chr21 11552549 11552664 -23354906 - L2 LINE L2 -1020 2294 2179 22 0 0 0 chr21 11554691 11554713 -23352857 + AT_rich Low_complexity Low_complexity 1 22 0 212 132 73 0 chr21 11555403 11555471 -23352099 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 2067 158 28 17 chr21 11556344 11556704 -23350866 + THE1B LTR MaLR 1 364 0 1188 33 0 13 chr21 11557961 11558112 -23349458 + L1PA2 LINE L1 6007 6155 0 30 0 0 0 chr21 11558618 11558648 -23348922 + AT_rich Low_complexity Low_complexity 1 30 0 280 305 29 0 chr21 11558696 11558801 -23348769 + MLT1E1 LTR MaLR 6 113 -541 726 227 84 31 chr21 11558923 11559148 -23348422 + MLT1E1 LTR MaLR 328 564 -90 1974 114 3 29 chr21 11560035 11560351 -23347219 - AluSc SINE Alu -1 308 1 21 36 0 0 chr21 11560660 11560688 -23346882 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr21 11560840 11560877 -23346693 + AT_rich Low_complexity Low_complexity 1 37 0 2251 63 17 3 chr21 11561175 11561475 -23346095 + AluY SINE Alu 1 304 -7 549 91 0 0 chr21 11561658 11561735 -23345835 - L1PA14 LINE L1 -2 6159 6083 232 158 0 0 chr21 11561738 11561776 -23345794 + L1PA14 LINE L1 6033 6070 -91 201 237 0 0 chr21 11561942 11562001 -23345569 + (CA)n Simple_repeat Simple_repeat 1 59 0 1373 281 61 39 chr21 11563809 11564634 -23342936 + L1MC4 LINE L1 7199 8041 -1 1961 139 4 0 chr21 11564696 11565006 -23342564 - AluSx SINE Alu 0 311 1 257 367 8 0 chr21 11565016 11565136 -23342434 - L2 LINE L2 -607 2707 2587 226 308 98 30 chr21 11565267 11565400 -23342170 - L2 LINE L2 -946 2368 2227 213 302 23 23 chr21 11565487 11565573 -23341997 - L2 LINE L2 -1291 2023 1938 1525 205 124 21 chr21 11565573 11565992 -23341578 - MLT1C LTR MaLR -3 464 3 2046 147 99 13 chr21 11566032 11566426 -23341144 + MSTA LTR MaLR 1 428 0 8575 157 6 41 chr21 11566430 11568063 -23339507 + MSTA-int LTR MaLR 5 1580 0 1828 171 83 39 chr21 11568063 11568473 -23339097 + MSTA LTR MaLR 1 428 0 22 56 0 0 chr21 11568990 11569026 -23338544 + AT_rich Low_complexity Low_complexity 1 36 0 2006 92 0 20 chr21 11569337 11569629 -23337941 + AluY SINE Alu 26 311 0 23 33 0 0 chr21 11569934 11569964 -23337606 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr21 11570302 11570335 -23337235 + AT_rich Low_complexity Low_complexity 1 33 0 195 100 0 0 chr21 11570418 11570448 -23337122 + (TTA)n Simple_repeat Simple_repeat 3 32 0 243 312 28 35 chr21 11571139 11571280 -23336290 + MIR SINE MIR 1 140 -122 226 146 18 36 chr21 11574520 11574575 -23332995 + A-rich Low_complexity Low_complexity 2 55 0 204 140 40 20 chr21 11574951 11575001 -23332569 + (TAAA)n Simple_repeat Simple_repeat 4 54 0 2493 55 0 0 chr21 11575222 11575531 -23332039 - AluY SINE Alu -2 309 1 441 132 0 0 chr21 11575558 11575626 -23331944 - L1M4 LINE L1 -1313 4833 4766 2007 159 11 24 chr21 11575732 11576110 -23331460 + THE1C LTR MaLR 1 373 -2 959 215 56 9 chr21 11576716 11576949 -23330621 + AluJb SINE Alu 41 284 -28 22 35 0 0 chr21 11576949 11576978 -23330592 + AT_rich Low_complexity Low_complexity 1 29 0 815 235 98 41 chr21 11577269 11577554 -23330016 + L1M1 LINE L1 3384 3725 -3915 524 267 12 30 chr21 11578927 11579092 -23328478 + MLT1E LTR MaLR 1 162 -431 229 217 14 22 chr21 11579099 11579237 -23328333 + (TA)n Simple_repeat Simple_repeat 1 137 0 231 36 0 0 chr21 11579253 11579281 -23328289 + (TG)n Simple_repeat Simple_repeat 2 29 0 28 0 0 0 chr21 11579386 11579414 -23328156 + AT_rich Low_complexity Low_complexity 1 28 0 614 241 52 69 chr21 11579421 11579653 -23327917 + MLT1E1 LTR MaLR 394 621 -33 261 157 0 0 chr21 11580684 11580735 -23326835 - LTR66 LTR ERVL -387 223 173 509 212 24 6 chr21 11580735 11580905 -23326665 + (TA)n Simple_repeat Simple_repeat 1 173 0 60 73 0 0 chr21 11580907 11581030 -23326540 + AT_rich Low_complexity Low_complexity 1 123 0 629 192 30 4 chr21 11581033 11581822 -23325748 + (TA)n Simple_repeat Simple_repeat 1 809 0 2225 85 7 0 chr21 11581822 11582105 -23325465 - AluSc SINE Alu -24 285 1 585 203 56 14 chr21 11582211 11582354 -23325216 + L1M4 LINE L1 5092 5240 -906 566 117 9 54 chr21 11582367 11582478 -23325092 + FLAM_C SINE Alu 34 139 -4 22 35 0 0 chr21 11584943 11584972 -23322598 + AT_rich Low_complexity Low_complexity 1 29 0 2249 178 29 5 chr21 11585217 11585628 -23321942 - LOR1b LTR ERV1 0 461 41 181 271 26 90 chr21 11585693 11585848 -23321722 + L2 LINE L2 3092 3236 -77 815 232 81 9 chr21 11585858 11586069 -23321501 - MLT1E1 LTR MaLR -13 641 416 4048 170 44 17 chr21 11586078 11586674 -23320896 - LTR39 LTR ERV1 -7 787 164 2321 100 0 0 chr21 11586674 11586974 -23320596 - AluSq SINE Alu -12 301 2 4048 170 44 17 chr21 11586974 11587143 -23320427 - LTR39 LTR ERV1 -630 164 1 275 227 59 59 chr21 11587179 11587298 -23320272 - MLT1E1 LTR MaLR -237 417 299 1636 186 53 24 chr21 11587314 11587652 -23319918 - MER7A DNA MER2_type 0 346 1 754 192 29 87 chr21 11587684 11587892 -23319678 + MER21B LTR ERV1 1 196 -667 836 213 47 0 chr21 11587951 11588120 -23319450 - AluJo SINE Alu -15 297 121 277 265 59 20 chr21 11588135 11588237 -23319333 - AluYb8 SINE Alu 0 308 203 559 303 49 26 chr21 11588503 11588770 -23318800 + MER21B LTR ERV1 467 739 -124 942 147 0 0 chr21 11589153 11589296 -23318274 - AluSg/x SINE Alu -16 294 152 4563 53 3 33 chr21 11589301 11589905 -23317665 - LTR10C LTR ERV1 -5 586 1 1002 172 0 0 chr21 11589905 11590062 -23317508 - AluSq SINE Alu -156 157 1 2306 117 27 16 chr21 11590270 11590639 -23316931 - THE1C LTR MaLR 0 375 3 8870 137 42 42 chr21 11590641 11592221 -23315349 - THE1C-int LTR MaLR 0 1580 1 2185 157 13 16 chr21 11592221 11592597 -23314973 - THE1C LTR MaLR 0 375 1 24 53 0 0 chr21 11593549 11593587 -23313983 + AT_rich Low_complexity Low_complexity 1 38 0 290 274 0 0 chr21 11593747 11593809 -23313761 - MIR SINE MIR -90 172 111 417 257 53 41 chr21 11594063 11594234 -23313336 - LTR40c LTR ERVL -14 451 279 2064 86 35 3 chr21 11596141 11596431 -23311139 + AluSg SINE Alu 1 299 -11 29 28 0 0 chr21 11597563 11597599 -23309971 + AT_rich Low_complexity Low_complexity 1 36 0 2548 184 82 47 chr21 11598034 11598798 -23308772 - LTR1B LTR ERV1 0 785 1 333 0 0 0 chr21 11598826 11598863 -23308707 + (TG)n Simple_repeat Simple_repeat 2 38 0 317 193 0 0 chr21 11599313 11599370 -23308200 - MLT1E3 LTR MaLR 0 624 568 532 295 60 30 chr21 11599415 11599649 -23307921 - MLT1E LTR MaLR -311 282 42 1969 137 0 0 chr21 11600179 11600471 -23307099 + AluSg SINE Alu 1 292 -18 2765 10 0 0 chr21 11601096 11601403 -23306167 + AluYa5 SINE Alu 1 307 -4 339 284 11 0 chr21 11601457 11601552 -23306018 + GA-rich Low_complexity Low_complexity 4 99 0 402 311 0 0 chr21 11601573 11601708 -23305862 - Charlie6 DNA MER1_type -85 3415 3281 28 29 0 0 chr21 11601758 11601793 -23305777 + AT_rich Low_complexity Low_complexity 1 35 0 2260 77 0 10 chr21 11601853 11602177 -23305393 + AluY SINE Alu 1 311 0 1022 74 0 0 chr21 11602934 11603069 -23304501 - AluY SINE Alu -4 307 173 833 181 50 81 chr21 11603187 11603408 -23304162 + MLT2B1 LTR ERVL 299 512 -8 511 242 38 6 chr21 11603427 11603584 -23303986 - Charlie6 DNA MER1_type -2015 1485 1324 207 0 0 0 chr21 11603632 11603655 -23303915 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 34 55 0 0 chr21 11603792 11603847 -23303723 + AT_rich Low_complexity Low_complexity 1 55 0 544 292 61 0 chr21 11604312 11604459 -23303111 - Charlie6 DNA MER1_type -3208 292 137 21 0 0 0 chr21 11605105 11605126 -23302444 + AT_rich Low_complexity Low_complexity 1 21 0 1880 189 10 31 chr21 11605340 11605731 -23301839 + MLT1B LTR MaLR 8 390 0 1559 204 48 21 chr21 11605787 11606165 -23301405 - MLT1B LTR MaLR 0 390 3 181 282 26 39 chr21 11607767 11607845 -23299725 + L2 LINE L2 3173 3249 -64 1336 193 4 31 chr21 11607867 11608126 -23299444 + AluJb SINE Alu 40 291 -21 723 241 36 64 chr21 11608196 11608445 -23299125 + L1M4 LINE L1 13 254 -6288 1761 152 11 0 chr21 11608460 11608736 -23298834 + AluSc SINE Alu 6 284 -25 319 295 9 67 chr21 11608773 11608878 -23298692 + L1M4 LINE L1 271 369 -6173 1962 140 64 14 chr21 11608907 11609264 -23298306 + THE1C LTR MaLR 1 375 0 9346 134 30 36 chr21 11609264 11610853 -23296717 + THE1C-int LTR MaLR 1 1580 0 881 154 41 12 chr21 11610897 11611191 -23296379 + THE1C LTR MaLR 24 371 -4 2000 258 38 41 chr21 11611196 11611885 -23295685 + L1M4 LINE L1 451 1137 -5405 1466 245 29 5 chr21 11611929 11612349 -23295221 + L1M4 LINE L1 1123 1552 -4990 1050 284 108 32 chr21 11612360 11612825 -23294745 - MLT1D LTR MaLR -5 500 1 940 243 69 20 chr21 11612826 11613172 -23294398 + L1M4 LINE L1 1550 1912 -4734 503 313 35 19 chr21 11613312 11613683 -23293887 + L1M4 LINE L1 2278 2654 -3992 2026 260 47 29 chr21 11613714 11614618 -23292952 + L1M4 LINE L1 2751 3670 -2974 1476 293 32 0 chr21 11614778 11615310 -23292260 + L1M4 LINE L1 3888 4436 -2208 447 188 0 0 chr21 11615441 11615526 -23292044 - L1 LINE L1 -1514 4632 4548 636 239 75 18 chr21 11615522 11615748 -23291822 + L1M4 LINE L1 4882 5120 -1524 1683 206 83 81 chr21 11615776 11616321 -23291249 - MLT2B3 LTR ERVL 0 554 9 925 293 17 7 chr21 11616339 11616636 -23290934 + L1M4 LINE L1 5323 5622 -1022 23 0 0 0 chr21 11616918 11616941 -23290629 + AT_rich Low_complexity Low_complexity 1 23 0 2325 77 0 0 chr21 11618293 11618590 -23288980 + AluY SINE Alu 1 297 -14 472 289 66 71 chr21 11619352 11619747 -23287823 + L1M4 LINE L1 3802 4194 -1952 33 0 0 0 chr21 11619921 11619954 -23287616 + AT_rich Low_complexity Low_complexity 1 33 0 367 271 87 40 chr21 11620048 11620325 -23287245 + L1M4 LINE L1 4483 4772 -1374 703 263 17 48 chr21 11620514 11620871 -23286699 + L1MD2 LINE L1 1008 1353 -5190 700 291 63 36 chr21 11620907 11621430 -23286140 + L1MD2 LINE L1 4877 5413 -1127 3218 256 28 27 chr21 11622468 11623588 -23283982 + L1MD2 LINE L1 5420 6537 -216 23 0 0 0 chr21 11625696 11625719 -23281851 + AT_rich Low_complexity Low_complexity 1 23 0 243 219 16 16 chr21 11626514 11626578 -23280992 + L1MDb LINE L1 1875 1938 -4602 1553 214 3 3 chr21 11626583 11626887 -23280683 + AluJo SINE Alu 6 309 -3 241 343 10 10 chr21 11627096 11627198 -23280372 - L1MD2 LINE L1 -227 6132 6031 1375 265 22 36 chr21 11627321 11627843 -23279727 - L1ME1 LINE L1 -321 5845 5336 2070 122 0 3 chr21 11627843 11628137 -23279433 - AluSg SINE Alu -17 293 1 1375 265 22 36 chr21 11628137 11628507 -23279063 - L1ME1 LINE L1 -830 5336 4963 439 234 47 6 chr21 11628543 11628885 -23278685 + (TA)n Simple_repeat Simple_repeat 1 356 0 532 261 38 68 chr21 11628904 11629168 -23278402 - L1ME1 LINE L1 -1200 4946 4691 517 263 15 15 chr21 11629646 11629783 -23277787 + LTR49-int LTR ERV1 354 490 -5841 379 344 59 21 chr21 11629995 11630283 -23277287 + L2 LINE L2 2818 3116 -197 30 45 0 0 chr21 11630589 11630633 -23276937 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr21 11630674 11630697 -23276873 + AT_rich Low_complexity Low_complexity 1 23 0 2494 118 3 6 chr21 11631261 11631626 -23275944 - THE1B LTR MaLR 0 364 1 2123 129 0 0 chr21 11631908 11632210 -23275360 + AluY SINE Alu 2 303 -8 222 37 0 0 chr21 11632521 11632548 -23275022 + (A)n Simple_repeat Simple_repeat 1 27 0 2044 55 0 12 chr21 11632963 11633218 -23274352 + AluY SINE Alu 32 283 -28 1008 86 0 0 chr21 11633218 11633358 -23274212 + (TA)n Simple_repeat Simple_repeat 2 141 0 189 107 0 0 chr21 11635448 11635476 -23272094 + (T)n Simple_repeat Simple_repeat 1 28 0 1975 114 7 4 chr21 11635640 11636001 -23271569 + AluSx SINE Alu 1 362 0 1596 187 14 7 chr21 11636139 11636433 -23271137 - AluSg SINE Alu -14 296 1 343 298 8 0 chr21 11637708 11637829 -23269741 + (TA)n Simple_repeat Simple_repeat 2 123 0 1440 180 32 42 chr21 11637882 11638193 -23269377 - AluSg SINE Alu -2 308 1 255 259 0 0 chr21 11638319 11638373 -23269197 - MER58 DNA MER1_type -158 57 4 26 50 0 0 chr21 11638615 11638655 -23268915 + AT_rich Low_complexity Low_complexity 1 40 0 374 216 29 29 chr21 11639548 11639650 -23267920 + L1MC5 LINE L1 7001 7102 -859 24 85 0 0 chr21 11641059 11641118 -23266452 + AT_rich Low_complexity Low_complexity 1 59 0 304 173 0 0 chr21 11641558 11641610 -23265960 - MIR SINE MIR 0 262 211 393 244 15 46 chr21 11641981 11642112 -23265458 + L1M4 LINE L1 3170 3296 -2850 987 220 45 84 chr21 11642518 11642982 -23264588 + L1MC5 LINE L1 6746 7191 -770 23 0 0 0 chr21 11643187 11643210 -23264360 + AT_rich Low_complexity Low_complexity 1 23 0 708 261 47 23 chr21 11644513 11644728 -23262842 - MER58A DNA MER1_type -4 220 1 877 307 68 49 chr21 11644810 11645449 -23262121 - L2 LINE L2 -114 3199 2550 21 0 0 0 chr21 11645666 11645687 -23261883 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr21 11646353 11646388 -23261182 + AT_rich Low_complexity Low_complexity 1 35 0 1500 225 100 8 chr21 11647881 11648272 -23259298 + MLT1D LTR MaLR 79 505 0 21 36 0 0 chr21 11648735 11648763 -23258807 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr21 11649427 11649462 -23258108 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr21 11649697 11649741 -23257829 + AT_rich Low_complexity Low_complexity 1 44 0 2453 69 0 3 chr21 11649833 11650136 -23257434 + AluY SINE Alu 1 302 -9 2182 110 0 16 chr21 11651146 11651456 -23256114 - AluSc SINE Alu -4 305 1 27 49 0 0 chr21 11651530 11651571 -23255999 + AT_rich Low_complexity Low_complexity 1 41 0 2006 102 3 14 chr21 11651920 11652213 -23255357 - AluY SINE Alu -21 290 1 1231 183 0 21 chr21 11652791 11653031 -23254539 + AluJo SINE Alu 1 235 -77 3080 166 31 23 chr21 11654316 11654923 -23252647 + MER50 LTR ERV1 1 612 -122 1869 121 0 38 chr21 11654924 11655058 -23252512 + AluSg SINE Alu 1 139 -171 2211 75 0 0 chr21 11655058 11655379 -23252191 + AluY SINE Alu 1 321 0 1869 121 0 38 chr21 11655379 11655532 -23252038 + AluSg SINE Alu 139 278 -32 1532 120 39 17 chr21 11655560 11655794 -23251776 + AluSq SINE Alu 1 239 -74 956 224 71 7 chr21 11656640 11656935 -23250635 - MER33 DNA MER1_type -5 319 6 209 292 0 0 chr21 11658017 11658082 -23249488 + (TA)n Simple_repeat Simple_repeat 2 66 0 230 104 0 62 chr21 11658082 11658130 -23249440 - L1MC4 LINE L1 -1339 6703 6659 272 207 24 37 chr21 11658206 11658288 -23249282 + (CATATA)n Simple_repeat Simple_repeat 2 82 0 23 0 0 0 chr21 11658503 11658526 -23249044 + AT_rich Low_complexity Low_complexity 1 23 0 1094 82 0 0 chr21 11659406 11659553 -23248017 + AluY SINE Alu 165 311 0 25 0 0 0 chr21 11659793 11659818 -23247752 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 11659969 11659990 -23247580 + AT_rich Low_complexity Low_complexity 1 21 0 584 98 33 45 chr21 11659990 11660235 -23247335 + (TATAA)n Simple_repeat Simple_repeat 1 242 0 25 51 0 0 chr21 11660278 11660317 -23247253 + AT_rich Low_complexity Low_complexity 1 39 0 378 265 26 17 chr21 11660344 11660461 -23247109 - MER5B DNA MER1_type -59 119 2 282 326 54 0 chr21 11660869 11660961 -23246609 + MLT1J LTR MaLR 205 301 -210 181 300 0 0 chr21 11661118 11661168 -23246402 - MIR SINE MIR 0 262 213 261 197 0 0 chr21 11661352 11661418 -23246152 + (TA)n Simple_repeat Simple_repeat 1 66 0 946 259 92 48 chr21 11661592 11661897 -23245673 + MSTD LTR MaLR 1 328 -68 1649 186 10 0 chr21 11661897 11661909 -23245661 - AluJb SINE Alu -15 297 287 432 51 0 0 chr21 11661909 11661968 -23245602 + (TG)n Simple_repeat Simple_repeat 2 60 0 1649 186 10 0 chr21 11661968 11662245 -23245325 - AluJb SINE Alu -25 287 5 946 259 92 48 chr21 11662245 11662318 -23245252 + MSTD LTR MaLR 328 396 0 4805 261 58 64 chr21 11662320 11663352 -23244218 + MSTD-int LTR MaLR 2 1020 -715 614 141 0 0 chr21 11663352 11663451 -23244119 - HY3 scRNA scRNA -1 100 2 4805 261 58 64 chr21 11663451 11664150 -23243420 + MSTD-int LTR MaLR 1020 1722 -13 1406 214 103 35 chr21 11664162 11664532 -23243038 + MSTD LTR MaLR 2 396 0 1931 231 69 29 chr21 11665546 11665972 -23241598 - L1M4 LINE L1 -1455 4691 4227 2387 69 0 10 chr21 11665972 11666278 -23241292 - AluY SINE Alu -8 303 1 1931 231 69 29 chr21 11666278 11666517 -23241053 - L1M4 LINE L1 -1919 4227 3999 2154 136 31 8 chr21 11666588 11666941 -23240629 + THE1B LTR MaLR 4 364 0 309 51 0 0 chr21 11667544 11667583 -23239987 + (CA)n Simple_repeat Simple_repeat 1 39 0 309 51 0 0 chr21 11667583 11667622 -23239948 + (TA)n Simple_repeat Simple_repeat 2 40 0 494 43 14 0 chr21 11667795 11667864 -23239706 + (TC)n Simple_repeat Simple_repeat 1 70 0 29 28 0 0 chr21 11668883 11668919 -23238651 + AT_rich Low_complexity Low_complexity 1 36 0 222 191 0 0 chr21 11669730 11669777 -23237793 + (CA)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr21 11670971 11670998 -23236572 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr21 11671656 11671678 -23235892 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr21 11672791 11672827 -23234743 + (TG)n Simple_repeat Simple_repeat 2 37 0 653 284 63 8 chr21 11672859 11673098 -23234472 + LTR16C LTR ERVL 192 443 -48 1363 230 34 62 chr21 11674084 11674300 -23233270 - L1MA9 LINE L1 -38 6274 6053 1945 157 0 3 chr21 11674300 11674612 -23232958 + AluSx SINE Alu 1 311 -1 1363 230 34 62 chr21 11674612 11675699 -23231871 - L1MA9 LINE L1 -259 6053 4996 21 57 0 0 chr21 11675808 11675843 -23231727 + AT_rich Low_complexity Low_complexity 1 35 0 279 54 0 0 chr21 11678332 11678369 -23229201 + (TG)n Simple_repeat Simple_repeat 2 38 0 1454 268 84 7 chr21 11679064 11679601 -23227969 - L1MD3 LINE L1 -14 7981 7404 680 253 11 29 chr21 11679602 11679776 -23227794 - L1MD3 LINE L1 -743 7252 7082 2010 137 65 6 chr21 11679816 11680152 -23227418 - THE1B LTR MaLR -8 356 1 357 277 157 6 chr21 11680179 11680345 -23227225 + LTR52 LTR ERVL 4 194 -227 22 88 0 0 chr21 11680471 11680528 -23227042 + AT_rich Low_complexity Low_complexity 1 57 0 361 159 0 0 chr21 11680537 11680600 -23226970 - L1MA3 LINE L1 0 6305 6243 2767 220 26 17 chr21 11680655 11681055 -23226515 + MER6 DNA MER2_type 5 414 -451 2823 93 65 12 chr21 11681055 11681444 -23226126 + MLT2A2 LTR ERVL 1 417 -36 213 39 0 0 chr21 11681444 11681470 -23226100 + (TA)n Simple_repeat Simple_repeat 2 27 0 2823 93 65 12 chr21 11681470 11681510 -23226060 + MLT2A2 LTR ERVL 417 453 0 2767 220 26 17 chr21 11681510 11681713 -23225857 + MER6 DNA MER2_type 414 614 -251 2295 168 42 65 chr21 11681716 11682283 -23225287 - LTR64 LTR ERVK -4 554 1 634 198 71 74 chr21 11682701 11682984 -23224586 - LTR49-int LTR ERV1 -1768 4563 4282 23 68 0 0 chr21 11682984 11683028 -23224542 + AT_rich Low_complexity Low_complexity 1 44 0 765 178 32 32 chr21 11683285 11683504 -23224066 - LTR49-int LTR ERV1 -2581 4017 3799 302 108 74 14 chr21 11683506 11683654 -23223916 + (TA)n Simple_repeat Simple_repeat 1 157 0 3901 135 97 45 chr21 11683657 11684448 -23223122 - LTR13 LTR ERVK -167 840 9 3063 181 36 86 chr21 11684449 11685874 -23221696 - LTR49-int LTR ERV1 -6225 1895 866 4291 230 26 54 chr21 11684800 11685455 -23222115 - LTR57-int LTR ERVL -3747 1596 995 1913 161 76 15 chr21 11685455 11685797 -23221773 + THE1B LTR MaLR 2 364 0 4291 230 26 54 chr21 11685797 11686465 -23221105 - LTR57-int LTR ERVL -4348 995 310 1987 189 41 93 chr21 11687407 11687810 -23219760 - LTR64 LTR ERVK 0 558 135 2791 16 0 0 chr21 11687810 11688120 -23219450 + AluY SINE Alu 1 310 -1 1987 189 41 93 chr21 11688120 11688131 -23219439 - LTR64 LTR ERVK -423 135 125 2495 52 7 0 chr21 11688131 11688438 -23219132 + AluY SINE Alu 1 309 -2 1987 189 41 93 chr21 11688438 11688611 -23218959 - LTR64 LTR ERVK -433 125 1 1319 130 7 59 chr21 11688611 11688881 -23218689 + MER6 DNA MER2_type 610 865 0 1028 264 54 34 chr21 11690957 11691495 -23216075 - L1MEc LINE L1 -2453 4087 3529 1749 172 151 0 chr21 11691495 11691867 -23215703 - MSTA LTR MaLR 0 428 1 1028 264 54 34 chr21 11691867 11692063 -23215507 - L1MEc LINE L1 -3011 3529 3338 859 296 64 12 chr21 11692075 11692403 -23215167 - L1MEc LINE L1 -3217 3323 2979 823 288 25 3 chr21 11692410 11692729 -23214841 - L1MEc LINE L1 -3582 2958 2633 370 311 73 42 chr21 11692747 11693036 -23214534 - L1MEc LINE L1 -4100 2621 2324 22 56 0 0 chr21 11693412 11693448 -23214122 + AT_rich Low_complexity Low_complexity 1 36 0 1690 258 70 61 chr21 11693448 11694514 -23213056 - L1MEc LINE L1 -4327 2213 1138 331 340 27 20 chr21 11694917 11695067 -23212503 - L1M4 LINE L1 -4967 1575 1425 30 27 0 0 chr21 11695498 11695535 -23212035 + AT_rich Low_complexity Low_complexity 1 37 0 232 280 27 0 chr21 11696878 11696953 -23210617 + (TATATG)n Simple_repeat Simple_repeat 6 82 0 1858 132 0 31 chr21 11697151 11697438 -23210132 + AluSx SINE Alu 3 280 -32 190 0 32 32 chr21 11697438 11697469 -23210101 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 1815 209 43 24 chr21 11697636 11698056 -23209514 + MSTC LTR MaLR 1 428 0 1247 160 0 0 chr21 11699160 11699373 -23208197 + L1PB1 LINE L1 5931 6143 -8 1193 138 0 20 chr21 11699394 11699590 -23207980 + AluSc SINE Alu 118 309 0 2117 93 45 7 chr21 11700228 11700517 -23207053 + AluSx SINE Alu 3 302 -10 21 36 0 0 chr21 11700573 11700601 -23206969 + AT_rich Low_complexity Low_complexity 1 28 0 1922 87 80 0 chr21 11700927 11701191 -23206379 + AluSc SINE Alu 11 295 -14 22 0 0 0 chr21 11702524 11702546 -23205024 + AT_rich Low_complexity Low_complexity 1 22 0 1896 128 0 21 chr21 11702546 11702835 -23204735 - AluSg SINE Alu -27 283 1 873 273 78 61 chr21 11704703 11705395 -23202175 - L1ME2 LINE L1 -3 6161 5455 2852 123 7 2 chr21 11705395 11705835 -23201735 - L1PB1 LINE L1 -7 6144 5703 873 273 78 61 chr21 11705835 11706015 -23201555 - L1ME2 LINE L1 -709 5455 5280 309 263 0 13 chr21 11706064 11706140 -23201430 + MER57A LTR ERV1 42 116 -287 1856 90 6 100 chr21 11706160 11706471 -23201099 + AluSx SINE Alu 1 282 -30 305 93 19 0 chr21 11706495 11706549 -23201021 + (TA)n Simple_repeat Simple_repeat 2 56 0 315 249 100 56 chr21 11706550 11706861 -23200709 + MER57A LTR ERV1 124 403 0 1104 312 122 29 chr21 11706929 11707735 -23199835 + L2 LINE L2 2448 3313 0 27 0 0 0 chr21 11708100 11708127 -23199443 + AT_rich Low_complexity Low_complexity 1 27 0 2570 110 21 5 chr21 11708585 11708967 -23198603 + MLT2A1 LTR ERVL 1 388 -56 207 0 0 0 chr21 11708970 11708993 -23198577 + (TG)n Simple_repeat Simple_repeat 2 24 0 204 149 0 40 chr21 11709010 11709084 -23198486 + (TA)n Simple_repeat Simple_repeat 1 71 0 284 241 0 26 chr21 11709098 11709214 -23198356 + (TA)n Simple_repeat Simple_repeat 2 114 0 41 48 0 0 chr21 11710333 11710395 -23197175 + AT_rich Low_complexity Low_complexity 1 62 0 26 50 0 0 chr21 11711434 11711474 -23196096 + AT_rich Low_complexity Low_complexity 1 40 0 181 297 14 40 chr21 11711867 11711941 -23195629 - L2 LINE L2 -2 3311 3240 270 291 0 0 chr21 11712418 11712473 -23195097 + L1 LINE L1 401 455 -7111 209 33 33 0 chr21 11712473 11712503 -23195067 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2654 261 41 32 chr21 11712560 11713716 -23193854 + L1 LINE L1 3344 4516 -3049 2005 146 0 3 chr21 11713723 11714024 -23193546 + AluSx SINE Alu 1 300 -12 1607 215 15 0 chr21 11714035 11714370 -23193200 - Tigger2a DNA MER2_type -1 433 94 251 198 49 12 chr21 11714386 11714467 -23193103 - L1 LINE L1 -2883 3263 3180 470 195 0 0 chr21 11714528 11714605 -23192965 + Tigger2a DNA MER2_type 1 77 -357 4400 231 25 24 chr21 11714606 11715868 -23191702 + L1 LINE L1 5559 6822 -743 53 69 0 0 chr21 11715976 11716078 -23191492 + AT_rich Low_complexity Low_complexity 1 102 0 21 0 0 0 chr21 11716575 11716596 -23190974 + AT_rich Low_complexity Low_complexity 1 21 0 361 36 18 18 chr21 11717306 11717362 -23190208 + (CAAAA)n Simple_repeat Simple_repeat 2 57 0 39 38 0 0 chr21 11717454 11717507 -23190063 + AT_rich Low_complexity Low_complexity 1 53 0 1253 325 65 30 chr21 11717865 11718295 -23189275 + L1MEc LINE L1 294 763 -5633 228 67 0 0 chr21 11718295 11718325 -23189245 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1253 325 65 30 chr21 11718325 11718651 -23188919 + L1MEc LINE L1 763 1076 -5320 31 26 0 0 chr21 11718651 11718689 -23188881 + AT_rich Low_complexity Low_complexity 1 38 0 1567 83 0 5 chr21 11718691 11718908 -23188662 + L1MA2 LINE L1 6062 6277 -27 239 196 18 0 chr21 11718912 11718968 -23188602 + L1MEc LINE L1 1068 1124 -5272 249 304 30 14 chr21 11720203 11720370 -23187200 + MIR SINE MIR 23 231 -31 1469 205 0 17 chr21 11720562 11720864 -23186706 + AluJo SINE Alu 3 299 -13 2016 123 133 38 chr21 11721623 11721795 -23185775 + MSTA LTR MaLR 1 155 -273 2098 72 4 4 chr21 11721795 11722073 -23185497 + AluY SINE Alu 28 305 -6 2016 123 133 38 chr21 11722073 11722291 -23185279 + MSTA LTR MaLR 155 428 0 235 254 34 17 chr21 11722824 11722942 -23184628 + L1M4 LINE L1 4477 4596 -1550 377 347 35 0 chr21 11722974 11723147 -23184423 + L1M4 LINE L1 4652 4830 -1316 2353 63 0 3 chr21 11724106 11724405 -23183165 - AluY SINE Alu -13 298 1 22 70 0 0 chr21 11724541 11724584 -23182986 + AT_rich Low_complexity Low_complexity 1 43 0 215 200 0 17 chr21 11724603 11724663 -23182907 + (TATG)n Simple_repeat Simple_repeat 2 60 0 309 294 31 12 chr21 11727210 11727373 -23180197 - L1M4 LINE L1 -2098 4048 3883 550 206 61 0 chr21 11727760 11727891 -23179679 - MLT1D LTR MaLR 0 505 367 24 32 0 0 chr21 11727971 11728002 -23179568 + AT_rich Low_complexity Low_complexity 1 31 0 25 65 0 0 chr21 11728662 11728708 -23178862 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr21 11728901 11728922 -23178648 + AT_rich Low_complexity Low_complexity 1 21 0 1998 158 31 19 chr21 11729232 11729592 -23177978 - THE1B LTR MaLR 0 364 1 11021 106 11 1 chr21 11729593 11731154 -23176416 - THE1B-int LTR MaLR -1 1579 2 2278 119 30 25 chr21 11731155 11731517 -23176053 - THE1B LTR MaLR 0 364 1 2023 153 137 8 chr21 11731787 11732166 -23175404 + MSTA LTR MaLR 1 428 0 1339 136 0 0 chr21 11732166 11732380 -23175190 + MSTA-int LTR MaLR 1 214 -1437 1167 73 0 48 chr21 11732393 11732580 -23174990 + AluY SINE Alu 127 305 0 655 258 79 24 chr21 11732582 11732873 -23174697 - L1M4 LINE L1 -5044 1811 1505 5683 138 19 11 chr21 11732957 11733312 -23174258 - L1PB1 LINE L1 -1 6150 5799 326 80 20 0 chr21 11733312 11733362 -23174208 + (TG)n Simple_repeat Simple_repeat 2 52 0 5683 138 19 11 chr21 11733362 11734153 -23173417 - L1PB1 LINE L1 -352 5799 4992 535 281 65 39 chr21 11734174 11734484 -23173086 - L1M4 LINE L1 -5349 1510 1193 442 335 73 43 chr21 11734490 11734723 -23172847 - L1M4 LINE L1 -5682 1177 938 225 65 0 0 chr21 11735408 11735439 -23172131 + (ATG)n Simple_repeat Simple_repeat 3 33 0 308 306 47 29 chr21 11735720 11735890 -23171680 - L1MC5 LINE L1 -35 7926 7754 225 0 0 0 chr21 11736356 11736381 -23171189 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 35 63 0 0 chr21 11737295 11737358 -23170212 + AT_rich Low_complexity Low_complexity 1 63 0 24 67 0 0 chr21 11738411 11738456 -23169114 + AT_rich Low_complexity Low_complexity 1 45 0 2338 315 69 26 chr21 11738471 11739504 -23168066 - HERVL LTR ERVL -1787 3867 2791 1689 164 11 11 chr21 11739760 11740041 -23167529 + AluJo SINE Alu 1 281 -31 180 0 0 0 chr21 11740044 11740064 -23167506 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 2159 107 0 20 chr21 11740256 11740556 -23167014 - AluSx SINE Alu -18 294 1 386 313 23 0 chr21 11740557 11740688 -23166882 - HERVL LTR ERVL -3325 2329 2196 360 0 0 0 chr21 11740722 11740762 -23166808 + (TG)n Simple_repeat Simple_repeat 2 41 0 262 269 0 43 chr21 11741877 11741970 -23165600 + (TATG)n Simple_repeat Simple_repeat 4 92 0 180 176 0 0 chr21 11741972 11742006 -23165564 + (CATATA)n Simple_repeat Simple_repeat 1 34 0 606 322 66 50 chr21 11742213 11742772 -23164798 + L1M4 LINE L1 3833 4400 -1746 190 311 0 0 chr21 11742820 11742881 -23164689 - MIR SINE MIR -1 261 201 1725 163 31 0 chr21 11743523 11743812 -23163758 + AluSx SINE Alu 1 298 -14 338 0 24 0 chr21 11743822 11743864 -23163706 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr21 11743869 11743893 -23163677 + AT_rich Low_complexity Low_complexity 1 24 0 31 0 0 0 chr21 11744176 11744207 -23163363 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr21 11744273 11744301 -23163269 + AT_rich Low_complexity Low_complexity 1 28 0 1908 151 7 0 chr21 11745537 11745836 -23161734 + AluSx SINE Alu 1 301 -11 287 266 114 19 chr21 11746616 11746774 -23160796 - Charlie7 DNA MER1_type -2374 238 66 2264 62 0 59 chr21 11746938 11747261 -23160309 + AluY SINE Alu 1 304 -7 25 0 0 0 chr21 11747391 11747416 -23160154 + AT_rich Low_complexity Low_complexity 1 25 0 400 361 24 30 chr21 11748066 11748232 -23159338 + MER5A DNA MER1_type 1 165 -24 25 0 0 0 chr21 11749136 11749161 -23158409 + AT_rich Low_complexity Low_complexity 1 25 0 61 37 0 0 chr21 11749464 11749546 -23158024 + AT_rich Low_complexity Low_complexity 1 82 0 841 236 0 24 chr21 11750055 11750301 -23157269 - L1 LINE L1 -2649 3497 3258 410 184 0 0 chr21 11750307 11750383 -23157187 + L1MB1 LINE L1 6088 6163 -5 181 73 24 49 chr21 11750672 11750713 -23156857 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 34 24 0 0 chr21 11750730 11750771 -23156799 + AT_rich Low_complexity Low_complexity 1 41 0 25 99 0 0 chr21 11750797 11750878 -23156692 + AT_rich Low_complexity Low_complexity 1 81 0 4493 179 35 7 chr21 11750881 11752377 -23155193 - L1MA8 LINE L1 -439 5852 4312 4117 220 56 26 chr21 11752359 11752463 -23155107 - L1MA8 LINE L1 -2404 3742 3643 2325 57 0 3 chr21 11752463 11752793 -23154777 + AluY SINE Alu 1 329 0 4117 220 56 26 chr21 11752793 11753930 -23153640 - L1MA8 LINE L1 -2503 3643 2462 1968 122 4 4 chr21 11755468 11755771 -23151799 + AluSg1 SINE Alu 1 303 0 22 56 0 0 chr21 11756254 11756290 -23151280 + AT_rich Low_complexity Low_complexity 1 36 0 22 56 0 0 chr21 11756698 11756734 -23150836 + AT_rich Low_complexity Low_complexity 1 36 0 1724 239 68 8 chr21 11757539 11758012 -23149558 - MLT1D LTR MaLR -3 502 2 273 276 29 0 chr21 11758125 11758230 -23149340 + (CATATA)n Simple_repeat Simple_repeat 3 110 0 22 0 0 0 chr21 11758477 11758499 -23149071 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr21 11758602 11758631 -23148939 + AT_rich Low_complexity Low_complexity 1 29 0 3949 218 31 18 chr21 11758803 11759391 -23148179 - L1 LINE L1 -1270 4876 4269 4248 62 2 0 chr21 11759391 11759954 -23147616 + L1PA5 LINE L1 5609 6172 0 3949 218 31 18 chr21 11759954 11760345 -23147225 - L1 LINE L1 -1877 4269 3884 2155 220 21 7 chr21 11760336 11761019 -23146551 + L1M2 LINE L1 4851 5544 -743 583 292 106 6 chr21 11761527 11761688 -23145882 - MER5A DNA MER1_type 0 189 13 35 103 0 0 chr21 11762741 11762867 -23144703 + AT_rich Low_complexity Low_complexity 1 126 0 1202 249 90 34 chr21 11764475 11764829 -23142741 + MLT1A2 LTR MaLR 1 374 0 310 241 11 0 chr21 11766217 11766304 -23141266 + L1ME LINE L1 2186 2273 -4123 1025 205 5 10 chr21 11766306 11766506 -23141064 - MER58A DNA MER1_type 0 224 26 516 239 13 45 chr21 11766956 11767111 -23140459 + L1ME LINE L1 4945 5094 -1121 1169 129 0 0 chr21 11767207 11767378 -23140192 + AluSp SINE Alu 132 302 -11 746 265 80 11 chr21 11767392 11767828 -23139742 + L1ME LINE L1 5189 5651 -582 1938 142 30 0 chr21 11769404 11769700 -23137870 + AluSg SINE Alu 1 305 -5 227 345 94 18 chr21 11770859 11771030 -23136540 + L3 LINE CR1 1273 1456 -121 1899 131 0 3 chr21 11772611 11772893 -23134677 - AluSx SINE Alu -25 287 7 425 308 8 0 chr21 11775749 11775866 -23131704 - MER93a LTR ERV1 -26 376 259 216 143 0 0 chr21 11775979 11776021 -23131549 + (GA)n Simple_repeat Simple_repeat 1 42 0 600 259 7 0 chr21 11776075 11776218 -23131352 - MER58B DNA MER1_type -1 340 197 889 184 30 30 chr21 11777080 11777218 -23130352 + L1PA16 LINE L1 5962 6102 -64 2228 85 0 19 chr21 11777218 11777525 -23130045 + AluSx SINE Alu 1 301 -11 889 184 30 30 chr21 11777525 11777587 -23129983 + L1PA16 LINE L1 6101 6162 -4 25 0 0 0 chr21 11777593 11777618 -23129952 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 11778047 11778069 -23129501 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr21 11778473 11778502 -23129068 + AT_rich Low_complexity Low_complexity 1 29 0 26 50 0 0 chr21 11778802 11778842 -23128728 + AT_rich Low_complexity Low_complexity 1 40 0 222 149 64 0 chr21 11780089 11780136 -23127434 + (TTTAG)n Simple_repeat Simple_repeat 1 50 0 1881 135 4 0 chr21 11780136 11780417 -23127153 - AluJb SINE Alu -24 288 7 300 111 0 0 chr21 11780963 11781008 -23126562 + (TA)n Simple_repeat Simple_repeat 1 45 0 1825 153 11 54 chr21 11781027 11781387 -23126183 + THE1C LTR MaLR 4 349 -26 1225 69 12 0 chr21 11781387 11781560 -23126010 + (TTTC)n Simple_repeat Simple_repeat 2 176 0 1825 153 11 54 chr21 11781560 11781571 -23125999 + THE1C LTR MaLR 349 359 -16 310 361 28 17 chr21 11781627 11781807 -23125763 - L1ME LINE L1 -381 5781 5600 257 201 101 67 chr21 11781899 11782048 -23125522 - L1ME LINE L1 -2320 5488 5335 285 301 10 10 chr21 11782530 11782633 -23124937 - L1ME LINE L1 -381 5781 5679 232 261 0 14 chr21 11782674 11782743 -23124827 + CT-rich Low_complexity Low_complexity 2 69 0 204 235 0 0 chr21 11782938 11782989 -23124581 + T-rich Low_complexity Low_complexity 2 52 0 404 287 96 26 chr21 11783238 11783510 -23124060 - L1M4 LINE L1 -3638 2508 2218 27 29 0 0 chr21 11783660 11783694 -23123876 + AT_rich Low_complexity Low_complexity 1 34 0 21 71 0 0 chr21 11784920 11784962 -23122608 + AT_rich Low_complexity Low_complexity 1 42 0 1106 192 142 39 chr21 11785315 11785674 -23121896 + MSTD LTR MaLR 1 396 0 5704 258 37 49 chr21 11785677 11787361 -23120209 + MSTD-int LTR MaLR 3 1666 -69 2054 114 10 0 chr21 11787364 11787654 -23119916 + AluSp SINE Alu 1 293 -20 312 120 0 0 chr21 11787657 11787707 -23119863 + (GAA)n Simple_repeat Simple_repeat 1 50 0 976 117 12 0 chr21 11787720 11787883 -23119687 + (GAA)n Simple_repeat Simple_repeat 1 165 0 763 270 5 5 chr21 11788103 11788288 -23119282 + MSTD LTR MaLR 212 396 0 2558 48 0 0 chr21 11789186 11789496 -23118074 + AluY SINE Alu 1 310 -1 337 306 0 16 chr21 11789970 11790094 -23117476 + CT-rich Low_complexity Low_complexity 3 124 0 2630 197 52 26 chr21 11790477 11790573 -23116997 + L1MB3 LINE L1 5380 5472 -711 279 0 0 0 chr21 11790573 11790604 -23116966 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2630 197 52 26 chr21 11790604 11791121 -23116449 + L1MB3 LINE L1 5472 6009 -174 8978 170 23 9 chr21 11791161 11792004 -23115566 - L1PA12 LINE L1 -4 7602 6772 2331 81 0 13 chr21 11792004 11792314 -23115256 - AluY SINE Alu -2 309 4 8978 170 23 9 chr21 11792314 11793982 -23113588 - L1PA12 LINE L1 -834 6772 5068 2330 185 7 5 chr21 11793984 11794400 -23113170 - L1PA12 LINE L1 -7158 423 7 418 240 123 7 chr21 11794409 11794563 -23113007 + L1MB3 LINE L1 6008 6179 -4 26 0 0 0 chr21 11794565 11794591 -23112979 + AT_rich Low_complexity Low_complexity 1 26 0 291 71 0 0 chr21 11795158 11795200 -23112370 + (TC)n Simple_repeat Simple_repeat 1 42 0 27 0 0 0 chr21 11795861 11795888 -23111682 + AT_rich Low_complexity Low_complexity 1 27 0 1844 162 47 47 chr21 11796034 11796398 -23111172 + THE1B LTR MaLR 1 364 0 186 43 0 0 chr21 11796661 11796684 -23110886 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 62 0 0 chr21 11796684 11796732 -23110838 - LTR66 LTR ERVL -393 217 170 1756 234 30 19 chr21 11796733 11797776 -23109794 - L1MC3 LINE L1 -933 6852 5651 1919 146 59 8 chr21 11797776 11798133 -23109437 + THE1C LTR MaLR 1 375 0 1756 234 30 19 chr21 11798133 11798222 -23109348 - L1MC3 LINE L1 -2134 5651 5565 846 271 38 24 chr21 11798225 11798517 -23109053 + MLT1D LTR MaLR 1 296 -209 210 118 0 0 chr21 11798517 11798551 -23109019 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 325 266 36 58 chr21 11798553 11798692 -23108878 - L1MCb LINE L1 -5891 154 19 343 337 61 18 chr21 11799036 11799199 -23108371 - L1ME LINE L1 -348 5822 5653 1609 157 69 16 chr21 11799232 11799537 -23108033 - MER4B LTR ERV1 -289 321 1 2452 44 0 7 chr21 11799895 11800193 -23107377 - AluY SINE Alu 0 311 16 380 307 28 42 chr21 11800543 11800755 -23106815 - L1ME LINE L1 -2160 3986 3778 26 64 0 0 chr21 11800955 11801002 -23106568 + AT_rich Low_complexity Low_complexity 1 47 0 30 45 0 0 chr21 11802088 11802132 -23105438 + AT_rich Low_complexity Low_complexity 1 44 0 227 79 26 0 chr21 11802199 11802237 -23105333 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 30 59 0 0 chr21 11804409 11804460 -23103110 + AT_rich Low_complexity Low_complexity 1 51 0 30 27 0 0 chr21 11804895 11804932 -23102638 + AT_rich Low_complexity Low_complexity 1 37 0 1951 229 44 8 chr21 11805363 11805838 -23101732 - L1MA10 LINE L1 -18 6316 5825 359 0 43 0 chr21 11805842 11805888 -23101682 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 1216 191 50 32 chr21 11805895 11806177 -23101393 - L1MA10 LINE L1 -388 5780 5494 439 193 0 0 chr21 11806185 11806303 -23101267 - AluY SINE Alu 0 311 206 1162 190 0 0 chr21 11806556 11806751 -23100819 + AluJb SINE Alu 1 195 -117 24 32 0 0 chr21 11806957 11806988 -23100582 + AT_rich Low_complexity Low_complexity 1 31 0 238 322 69 0 chr21 11807466 11807553 -23100017 + L2 LINE L2 313 405 -2909 23 54 0 0 chr21 11809831 11809868 -23097702 + AT_rich Low_complexity Low_complexity 1 37 0 26 0 0 0 chr21 11810242 11810268 -23097302 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr21 11812153 11812181 -23095389 + AT_rich Low_complexity Low_complexity 1 28 0 1514 240 36 36 chr21 11812905 11813580 -23093990 + L1MC/D LINE L1 5042 5726 -516 6199 158 69 2 chr21 11813925 11815073 -23092497 + Tigger3b DNA MER2_type 4 1228 -3 1627 183 0 40 chr21 11815294 11815652 -23091918 + AluJo SINE Alu 1 345 0 2122 85 0 57 chr21 11816021 11816338 -23091232 + AluY SINE Alu 1 299 -12 1390 200 35 6 chr21 11816781 11817096 -23090474 + Tigger7 DNA MER2_type 1 412 -2075 23 54 0 0 chr21 11817915 11817952 -23089618 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr21 11818128 11818156 -23089414 + AT_rich Low_complexity Low_complexity 1 28 0 2915 261 49 27 chr21 11818980 11820172 -23087398 - L1MA5 LINE L1 -2 6298 5078 324 193 23 0 chr21 11820168 11820256 -23087314 - L1M4 LINE L1 -1092 5054 4965 441 264 6 17 chr21 11820334 11820512 -23087058 - L1M4 LINE L1 -2919 3227 3052 3002 156 54 25 chr21 11821414 11821761 -23085809 + MSTA-int LTR MaLR 1011 1381 -199 2026 125 0 69 chr21 11821761 11822096 -23085474 - AluSx SINE Alu 0 312 1 3002 156 54 25 chr21 11822096 11822301 -23085269 + MSTA-int LTR MaLR 1381 1579 -1 1971 131 134 33 chr21 11822302 11822691 -23084879 + MSTA LTR MaLR 1 428 0 1976 153 129 3 chr21 11823522 11823902 -23083668 - MSTA LTR MaLR 0 428 1 4813 191 50 50 chr21 11824286 11826558 -23081012 + L1MC1 LINE L1 20 2536 -3890 6256 258 50 30 chr21 11826619 11828917 -23078653 + L1MC1 LINE L1 2617 4960 -1466 4469 197 31 18 chr21 11828918 11830204 -23077366 + L1MC1 LINE L1 5275 6613 0 304 284 45 0 chr21 11831498 11831586 -23075984 - MIR SINE MIR -122 140 49 2430 46 0 7 chr21 11831926 11832270 -23075300 + AluY SINE Alu 1 311 0 2503 50 0 0 chr21 11833151 11833454 -23074116 - AluY SINE Alu -8 303 1 1214 163 29 32 chr21 11835446 11835692 -23071878 + THE1A LTR MaLR 1 245 -110 4167 112 15 2 chr21 11835693 11836298 -23071272 + THE1A-int LTR MaLR 1 613 -967 9942 215 22 5 chr21 11836303 11838645 -23068925 + L1 LINE L1 2394 4776 -1370 21 0 0 0 chr21 11840727 11840748 -23066822 + AT_rich Low_complexity Low_complexity 1 21 0 2189 191 18 21 chr21 11841272 11841707 -23065863 + MLT1C LTR MaLR 4 437 -30 2485 50 0 22 chr21 11841716 11842033 -23065537 - AluY SINE Alu -1 310 1 2049 74 11 18 chr21 11842387 11842701 -23064869 + AluSc SINE Alu 1 312 0 1988 87 43 37 chr21 11842825 11843124 -23064446 + AluSc SINE Alu 1 301 -8 22 56 0 0 chr21 11843251 11843287 -23064283 + AT_rich Low_complexity Low_complexity 1 36 0 1698 285 39 17 chr21 11843876 11845009 -23062561 - ERVL-D LTR ERVL -4347 1254 2 249 109 0 127 chr21 11845018 11845073 -23062497 - MLT2D LTR ERVL 0 414 367 1492 212 38 35 chr21 11845103 11845476 -23062094 - MLT2D LTR ERVL -40 374 1 395 184 0 0 chr21 11845880 11845956 -23061614 - L1MA3 LINE L1 0 6305 6230 2068 122 3 7 chr21 11848034 11848337 -23059233 + AluSq SINE Alu 1 302 -11 184 349 88 71 chr21 11848870 11849108 -23058462 + L2 LINE L2 2397 2638 -676 240 319 44 9 chr21 11850372 11850485 -23057085 + MIR SINE MIR 73 189 -73 343 287 52 9 chr21 11850533 11850648 -23056922 + MIR SINE MIR 122 241 -21 2369 37 0 0 chr21 11850893 11851203 -23056367 - AluY SINE Alu 0 320 11 23 0 0 0 chr21 11851208 11851231 -23056339 + AT_rich Low_complexity Low_complexity 1 23 0 687 226 37 74 chr21 11851447 11851532 -23056038 - MER74B LTR ERVL 0 622 535 1959 116 0 14 chr21 11851532 11851843 -23055727 + AluSg SINE Alu 1 307 0 214 39 0 0 chr21 11851817 11851866 -23055704 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 687 226 37 74 chr21 11851843 11851993 -23055577 - MER74B LTR ERVL -87 535 414 204 200 0 0 chr21 11852224 11852269 -23055301 + (TA)n Simple_repeat Simple_repeat 2 46 0 349 263 71 10 chr21 11852358 11852457 -23055113 + L2 LINE L2 3138 3242 -30 1602 268 8 8 chr21 11852473 11852853 -23054717 - MER74A LTR ERVL -170 388 9 458 175 37 8 chr21 11855887 11856138 -23051432 + (TA)n Simple_repeat Simple_repeat 1 258 0 1762 264 36 29 chr21 11856551 11856678 -23050892 - MER90 LTR ERV1 -15 599 474 2277 87 10 0 chr21 11856678 11856977 -23050593 + AluSp SINE Alu 1 302 -11 1762 264 36 29 chr21 11856977 11857375 -23050195 - MER90 LTR ERV1 -140 474 70 359 252 62 88 chr21 11857430 11857657 -23049913 - L1MA10 LINE L1 -6 6172 5953 1088 257 14 50 chr21 11857682 11858106 -23049464 - L1ME1 LINE L1 -229 6355 5947 547 289 48 57 chr21 11858110 11858425 -23049145 - L1ME1 LINE L1 -1950 4614 4303 2121 279 35 58 chr21 11858420 11858832 -23048738 - L1ME1 LINE L1 -2564 4000 3580 1775 121 3 64 chr21 11858832 11859130 -23048440 + AluSx SINE Alu 3 282 -30 2121 279 35 58 chr21 11859130 11860155 -23047415 - L1ME1 LINE L1 -2984 3580 2597 2144 120 0 3 chr21 11860246 11860554 -23047016 - AluSx SINE Alu -5 307 1 884 249 53 83 chr21 11860582 11861292 -23046278 - L1ME1 LINE L1 -4011 2553 1865 1379 269 63 29 chr21 11861353 11862075 -23045495 - L1ME1 LINE L1 -4911 1134 791 444 239 80 29 chr21 11862429 11862567 -23045003 - L1ME1 LINE L1 -5771 274 130 22 0 0 0 chr21 11862606 11862628 -23044942 + AT_rich Low_complexity Low_complexity 1 22 0 1285 294 65 56 chr21 11862736 11863472 -23044098 - L1MEc LINE L1 -5617 779 37 21 0 0 0 chr21 11865355 11865376 -23042194 + AT_rich Low_complexity Low_complexity 1 21 0 2087 133 0 13 chr21 11865639 11865947 -23041623 - AluSq SINE Alu -9 304 1 223 286 29 0 chr21 11866796 11866866 -23040704 + (TATATG)n Simple_repeat Simple_repeat 5 76 0 2171 192 26 66 chr21 11867277 11867369 -23040201 - L1M1 LINE L1 -681 5619 5525 2042 57 0 71 chr21 11867369 11867665 -23039905 - AluY SINE Alu -34 277 3 2171 192 26 66 chr21 11867665 11868380 -23039190 - L1MA4 LINE L1 -775 5525 4843 1814 218 69 54 chr21 11868377 11869101 -23038469 + L1MA4 LINE L1 5557 6291 -9 182 328 92 25 chr21 11870309 11870428 -23037142 - MIR SINE MIR -27 235 109 185 0 40 0 chr21 11870469 11870494 -23037076 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 22 35 0 0 chr21 11872117 11872146 -23035424 + AT_rich Low_complexity Low_complexity 1 29 0 1760 231 25 19 chr21 11872298 11872774 -23034796 + L1MB8 LINE L1 5694 6172 -6 588 289 11 17 chr21 11872859 11873039 -23034531 + MIR SINE MIR 72 250 -12 220 250 88 29 chr21 11874165 11874233 -23033337 + MER5B DNA MER1_type 106 177 -1 21 0 0 0 chr21 11874492 11874513 -23033057 + AT_rich Low_complexity Low_complexity 1 21 0 1311 166 79 57 chr21 11874653 11875020 -23032550 - THE1C LTR MaLR 0 375 1 1682 192 0 0 chr21 11876552 11876839 -23030731 - AluJb SINE Alu -4 308 22 4455 192 24 24 chr21 11876839 11878374 -23029196 - MER52A LTR ERV1 -9 1746 1 34 0 0 0 chr21 11878802 11878836 -23028734 + AT_rich Low_complexity Low_complexity 1 34 0 1933 190 6 3 chr21 11879147 11879511 -23028059 - MER47A DNA MER2_type -1 365 1 30 0 0 0 chr21 11881066 11881096 -23026474 + AT_rich Low_complexity Low_complexity 1 30 0 41 66 0 0 chr21 11882190 11882266 -23025304 + AT_rich Low_complexity Low_complexity 1 76 0 2450 70 3 0 chr21 11882335 11882637 -23024933 + AluSp SINE Alu 1 303 -10 23 54 0 0 chr21 11883460 11883497 -23024073 + AT_rich Low_complexity Low_complexity 1 37 0 202 247 75 54 chr21 11883630 11883723 -23023847 - L2 LINE L2 -383 2930 2836 525 309 28 58 chr21 11883794 11884085 -23023485 - L2 LINE L2 -2024 1290 1009 48 18 0 0 chr21 11884218 11884273 -23023297 + AT_rich Low_complexity Low_complexity 1 55 0 2431 44 7 3 chr21 11884502 11884799 -23022771 + AluY SINE Alu 1 298 -13 252 0 0 0 chr21 11884813 11884841 -23022729 + (TG)n Simple_repeat Simple_repeat 2 29 0 29 70 0 0 chr21 11885507 11885564 -23022006 + AT_rich Low_complexity Low_complexity 1 57 0 1968 124 4 0 chr21 11886448 11886723 -23020847 + AluSc SINE Alu 1 276 -33 180 0 0 0 chr21 11886723 11886743 -23020827 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr21 11886945 11886968 -23020602 + AT_rich Low_complexity Low_complexity 1 23 0 2568 39 3 3 chr21 11887000 11887311 -23020259 - AluY SINE Alu 0 311 1 238 239 43 11 chr21 11888070 11888162 -23019408 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 1755 165 113 61 chr21 11888300 11888337 -23019233 - MSTA LTR MaLR 0 428 394 2082 114 0 44 chr21 11888337 11888653 -23018917 - AluSg SINE Alu -8 302 1 1755 165 113 61 chr21 11888653 11889022 -23018548 - MSTA LTR MaLR -34 394 1 23 0 0 0 chr21 11889135 11889158 -23018412 + AT_rich Low_complexity Low_complexity 1 23 0 944 221 37 64 chr21 11891521 11891764 -23015806 - MLT2B2 LTR ERVL -2 513 233 1133 170 113 23 chr21 11891764 11891884 -23015686 + AluJb SINE Alu 1 109 -193 393 29 72 14 chr21 11891884 11891953 -23015617 + A-rich Low_complexity Low_complexity 2 74 0 1133 170 113 23 chr21 11891953 11892097 -23015473 + AluJb SINE Alu 109 289 -13 944 221 37 64 chr21 11892097 11892181 -23015389 - MLT2B2 LTR ERVL -282 233 148 269 308 11 0 chr21 11893849 11893940 -23013630 + (TATG)n Simple_repeat Simple_repeat 4 95 0 1236 281 9 16 chr21 11893947 11894267 -23013303 - MLT1A2 LTR MaLR -12 362 45 1116 138 0 0 chr21 11894417 11894577 -23012993 - AluSq SINE Alu -10 303 144 2128 118 20 0 chr21 11894623 11894929 -23012641 + AluSx SINE Alu 1 312 0 809 230 109 7 chr21 11894980 11895254 -23012316 - MER33 DNA MER1_type -22 302 1 1409 133 26 110 chr21 11896202 11896511 -23011059 - AluJb SINE Alu -21 291 9 26 30 0 0 chr21 11900509 11900542 -23007028 + AT_rich Low_complexity Low_complexity 1 33 0 323 255 82 71 chr21 11901257 11901441 -23006129 - L2 LINE L2 -15 3298 3113 2168 139 0 0 chr21 11902516 11902826 -23004744 + AluSx SINE Alu 1 310 -2 577 338 21 8 chr21 11902960 11903197 -23004373 - MIR SINE MIR -2 260 21 255 217 0 0 chr21 11903334 11903380 -23004190 + MLT1I LTR MaLR 98 143 -266 2072 244 29 4 chr21 11903388 11903843 -23003727 + MER70A LTR ERVL 1 466 -6 24 0 0 0 chr21 11904068 11904092 -23003478 + AT_rich Low_complexity Low_complexity 1 24 0 2321 61 7 7 chr21 11904596 11904893 -23002677 + AluY SINE Alu 15 311 0 1626 171 23 3 chr21 11905019 11905324 -23002246 - AluSx SINE Alu 0 312 2 433 242 31 12 chr21 11905498 11905659 -23001911 + L1MD3 LINE L1 7821 7984 -11 2323 106 0 0 chr21 11905932 11906244 -23001326 + AluSx SINE Alu 1 312 0 1456 193 75 46 chr21 11906264 11906637 -23000933 - L1PB4 LINE L1 -6 6150 5767 517 289 158 45 chr21 11906652 11906918 -23000652 - MLT1H LTR MaLR -253 296 1 25 31 0 0 chr21 11908509 11908541 -22999029 + AT_rich Low_complexity Low_complexity 1 32 0 861 166 32 0 chr21 11909574 11909731 -22997839 - THE1C LTR MaLR 0 375 214 21 0 0 0 chr21 11911010 11911031 -22996539 + AT_rich Low_complexity Low_complexity 1 21 0 1370 263 81 2 chr21 11911916 11912312 -22995258 + L1MD2 LINE L1 5930 6356 -3 21 36 0 0 chr21 11912957 11912985 -22994585 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr21 11913504 11913536 -22994034 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 11913603 11913626 -22993944 + AT_rich Low_complexity Low_complexity 1 23 0 1656 199 42 26 chr21 11913655 11914037 -22993533 - MLT1B LTR MaLR 0 390 3 22 35 0 0 chr21 11914277 11914306 -22993264 + AT_rich Low_complexity Low_complexity 1 29 0 217 239 0 0 chr21 11914390 11914436 -22993134 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 1982 144 23 0 chr21 11914759 11915058 -22992512 - AluSq SINE Alu -7 306 1 1147 223 118 57 chr21 11915141 11915617 -22991953 - MLT1D LTR MaLR 0 505 1 279 0 0 0 chr21 11917007 11917038 -22990532 + (TG)n Simple_repeat Simple_repeat 2 32 0 186 363 73 16 chr21 11918613 11918737 -22988833 + L2 LINE L2 2502 2632 -682 1564 187 7 13 chr21 11920154 11920453 -22987117 + AluJb SINE Alu 1 297 -15 1616 211 13 3 chr21 11920789 11921087 -22986483 + MLT2B2 LTR ERVL 1 301 -214 1113 150 0 66 chr21 11921097 11921323 -22986247 + L1MA9 LINE L1 6069 6279 -33 472 246 9 9 chr21 11922748 11922862 -22984708 - MLT1J2 LTR MaLR -295 155 42 2552 48 0 3 chr21 11922931 11923274 -22984296 + AluY SINE Alu 1 342 0 4066 167 23 15 chr21 11923828 11924644 -22982926 - L1MA8 LINE L1 -12 6279 5457 26 74 0 0 chr21 11924966 11925020 -22982550 + AT_rich Low_complexity Low_complexity 1 54 0 531 208 62 11 chr21 11925145 11925323 -22982247 + L1M4 LINE L1 2636 2822 -3324 21 0 0 0 chr21 11926503 11926524 -22981046 + AT_rich Low_complexity Low_complexity 1 21 0 1847 108 4 0 chr21 11929093 11929352 -22978218 - AluY SINE Alu -11 300 41 26 0 0 0 chr21 11929614 11929640 -22977930 + AT_rich Low_complexity Low_complexity 1 26 0 958 213 42 14 chr21 11930173 11930389 -22977181 - MLT1D LTR MaLR -7 498 277 1938 178 19 11 chr21 11930394 11930753 -22976817 + THE1C LTR MaLR 14 375 0 9713 135 32 4 chr21 11930753 11932290 -22975280 + THE1C-int LTR MaLR 1 1580 0 1310 185 142 21 chr21 11932290 11932615 -22974955 + THE1B LTR MaLR 1 364 0 293 248 133 89 chr21 11932615 11932885 -22974685 - MLT1D LTR MaLR -216 289 8 1278 246 91 63 chr21 11933139 11933746 -22973824 - MLT1E3 LTR MaLR 0 624 1 25 0 0 0 chr21 11934330 11934355 -22973215 + AT_rich Low_complexity Low_complexity 1 25 0 1926 161 3 0 chr21 11934839 11935149 -22972421 + AluSx SINE Alu 1 311 -1 1689 180 3 0 chr21 11937217 11937500 -22970070 + AluSx SINE Alu 5 288 -24 2357 199 19 27 chr21 11937996 11938520 -22969050 + MLT2B1 LTR ERVL 1 520 0 31 0 0 0 chr21 11938809 11938840 -22968730 + AT_rich Low_complexity Low_complexity 1 31 0 219 323 18 0 chr21 11939241 11939309 -22968261 + MIR SINE MIR 20 89 -119 26 93 0 0 chr21 11939355 11939430 -22968140 + AT_rich Low_complexity Low_complexity 1 75 0 22 0 0 0 chr21 11940984 11941006 -22966564 + AT_rich Low_complexity Low_complexity 1 22 0 1383 208 68 14 chr21 11942175 11942290 -22965280 + AluJb SINE Alu 1 108 -194 975 9 0 0 chr21 11942290 11942402 -22965168 + (TAAAA)n Simple_repeat Simple_repeat 5 116 0 1383 208 68 14 chr21 11942402 11942565 -22965005 + AluJb SINE Alu 108 294 -8 2391 86 0 16 chr21 11942871 11943186 -22964384 + AluY SINE Alu 1 310 -1 21 100 0 0 chr21 11944048 11944118 -22963452 + AT_rich Low_complexity Low_complexity 1 70 0 1549 255 12 62 chr21 11944354 11944836 -22962734 + MLT2B1 LTR ERVL 1 458 -62 393 248 23 0 chr21 11944856 11944989 -22962581 + (TA)n Simple_repeat Simple_repeat 1 136 0 3816 154 77 49 chr21 11945503 11946306 -22961264 - LTR1B LTR ERV1 0 826 1 341 315 42 42 chr21 11946327 11946543 -22961027 - L2 LINE L2 0 3313 3098 295 302 10 0 chr21 11946889 11946985 -22960585 + MLT1J1 LTR MaLR 350 446 0 614 264 71 71 chr21 11948709 11949193 -22958377 + MLT1F1 LTR MaLR 15 565 -2 180 250 0 0 chr21 11949272 11949336 -22958234 + (TA)n Simple_repeat Simple_repeat 1 64 0 854 200 6 12 chr21 11950157 11950322 -22957248 - MLT1A1 LTR MaLR -199 166 3 21 71 0 0 chr21 11950803 11950845 -22956725 + AT_rich Low_complexity Low_complexity 1 42 0 2259 92 3 0 chr21 11953147 11953461 -22954109 + AluSc SINE Alu 17 331 0 2312 97 3 0 chr21 11954694 11955002 -22952568 - AluSg SINE Alu -1 309 1 1542 227 17 37 chr21 11955842 11956194 -22951376 - MLT1A1 LTR MaLR -2 363 19 346 289 0 21 chr21 11956370 11956467 -22951103 - LTR16A1 LTR ERVL -118 339 245 759 308 80 49 chr21 11957269 11957655 -22949915 + L2 LINE L2 2412 2809 -505 218 186 0 0 chr21 11957984 11958027 -22949543 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 617 80 11 0 chr21 11959861 11959949 -22947621 + L1PA5 LINE L1 6061 6149 -5 26 0 0 0 chr21 11960224 11960250 -22947320 + AT_rich Low_complexity Low_complexity 1 26 0 25 31 0 0 chr21 11960513 11960545 -22947025 + AT_rich Low_complexity Low_complexity 1 32 0 787 161 143 0 chr21 11961134 11961302 -22946268 - AluSg/x SINE Alu 0 310 119 1162 234 33 6 chr21 11961541 11961878 -22945692 - Charlie1a DNA MER1_type -536 919 574 487 90 0 0 chr21 11961908 11961975 -22945595 + AluJ/FRAM SINE Alu 233 299 -13 264 305 53 0 chr21 11961981 11962076 -22945494 + L2 LINE L2 2132 2231 -1083 2050 117 0 0 chr21 11962076 11962381 -22945189 - AluSq SINE Alu 0 305 1 1431 268 85 28 chr21 11962410 11962952 -22944618 - Charlie1a DNA MER1_type -882 573 1 203 388 34 48 chr21 11964771 11964918 -22942652 - L2 LINE L2 0 3272 3128 322 191 25 49 chr21 11965106 11965268 -22942302 + (TTATA)n Simple_repeat Simple_repeat 4 161 0 2328 77 3 0 chr21 11965602 11965902 -22941668 + AluY SINE Alu 1 301 -10 1965 144 0 0 chr21 11966898 11967197 -22940373 - AluSg SINE Alu -11 299 1 548 270 132 24 chr21 11967517 11967813 -22939757 + L3 LINE CR1 575 902 -675 25 0 0 0 chr21 11968327 11968352 -22939218 + AT_rich Low_complexity Low_complexity 1 25 0 238 254 45 0 chr21 11969216 11969283 -22938287 - MIR SINE MIR -17 245 176 23 33 0 0 chr21 11970127 11970157 -22937413 + AT_rich Low_complexity Low_complexity 1 30 0 354 272 132 68 chr21 11971587 11971852 -22935718 - HAL1 LINE L1 -379 2128 1847 660 267 35 19 chr21 11971862 11972120 -22935450 - HAL1 LINE L1 -710 1797 1536 314 308 90 30 chr21 11972345 11972525 -22935045 - HAL1 LINE L1 -1148 1359 1160 2124 125 6 6 chr21 11972525 11972836 -22934734 - AluSx SINE Alu -1 311 1 314 308 90 30 chr21 11972836 11972889 -22934681 - HAL1 LINE L1 -1347 1160 1112 261 0 0 0 chr21 11972893 11972922 -22934648 + (TTTAA)n Simple_repeat Simple_repeat 2 30 0 2327 45 0 0 chr21 11972922 11973190 -22934380 - AluY SINE Alu -20 291 24 236 91 57 80 chr21 11973241 11973329 -22934241 + (TTATA)n Simple_repeat Simple_repeat 4 89 0 679 229 23 0 chr21 11973360 11973491 -22934079 + MER52A LTR ERV1 667 800 -955 293 232 146 0 chr21 11973556 11973638 -22933932 + MER52A LTR ERV1 801 894 -861 629 220 19 38 chr21 11973640 11973799 -22933771 + MER61D LTR ERV1 334 489 -12 401 377 67 36 chr21 11973979 11974425 -22933145 - HAL1 LINE L1 -1422 1085 626 2239 90 7 3 chr21 11974428 11974727 -22932843 + AluSc SINE Alu 1 300 -9 352 320 82 77 chr21 11974774 11975152 -22932418 - HAL1 LINE L1 -1899 608 229 442 173 27 0 chr21 11975430 11975505 -22932065 - MER2 DNA MER2_type 0 344 268 2135 116 3 7 chr21 11975516 11975817 -22931753 + AluSc SINE Alu 3 302 -7 2034 128 3 3 chr21 11976173 11976471 -22931099 - AluSx SINE Alu -14 298 1 2139 141 37 3 chr21 11976629 11976977 -22930593 - THE1B LTR MaLR 0 364 5 9497 138 44 2 chr21 11976981 11978497 -22929073 - THE1B-int LTR MaLR 0 1580 1 2053 164 28 0 chr21 11978497 11978851 -22928719 - THE1B LTR MaLR 0 364 1 2068 116 0 0 chr21 11979024 11979300 -22928270 + AluY SINE Alu 22 297 -14 858 222 0 0 chr21 11980822 11980989 -22926581 - FRAM SINE Alu 0 40 1 1590 114 0 9 chr21 11981362 11981581 -22925989 + AluSg/x SINE Alu 88 304 -6 2364 89 0 3 chr21 11981728 11982030 -22925540 + AluSg1 SINE Alu 1 301 -8 1576 214 0 10 chr21 11982396 11982709 -22924861 + AluJo SINE Alu 3 312 0 579 281 72 33 chr21 11983591 11983954 -22923616 - ERVL LTR ERVL -618 5146 4770 329 288 68 25 chr21 11984046 11984164 -22923406 - LTR52 LTR ERVL -298 123 1 21 0 0 0 chr21 11984305 11984326 -22923244 + AT_rich Low_complexity Low_complexity 1 21 0 1867 162 0 0 chr21 11984580 11984870 -22922700 - AluSx SINE Alu -22 290 1 1942 173 6 9 chr21 11986024 11986365 -22921205 + MER2 DNA MER2_type 4 343 -1 207 0 0 0 chr21 11986376 11986399 -22921171 + (T)n Simple_repeat Simple_repeat 1 23 0 2144 110 6 19 chr21 11987184 11987501 -22920069 - AluSq SINE Alu 0 313 1 28 61 0 0 chr21 11987634 11987683 -22919887 + AT_rich Low_complexity Low_complexity 1 49 0 36 70 0 0 chr21 11987706 11987777 -22919793 + AT_rich Low_complexity Low_complexity 1 71 0 2116 20 4 0 chr21 11987778 11988024 -22919546 - L1PA3 LINE L1 -3 6152 5906 986 276 57 49 chr21 11988024 11988397 -22919173 - Charlie2 DNA MER1_type -268 2594 2211 2029 114 30 0 chr21 11988397 11988696 -22918874 + AluSp SINE Alu 1 308 -5 986 276 57 49 chr21 11988696 11989038 -22918532 - Charlie2 DNA MER1_type -651 2211 1873 2378 68 0 43 chr21 11989097 11989422 -22918148 + AluY SINE Alu 1 311 0 280 216 45 11 chr21 11989596 11989684 -22917886 + (TATATG)n Simple_repeat Simple_repeat 3 93 0 4735 24 0 0 chr21 11990065 11990613 -22916957 - L1PA4 LINE L1 -91 6064 5517 614 81 0 0 chr21 11990613 11990700 -22916870 + L1PA2 LINE L1 6064 6150 -5 382 151 0 0 chr21 11991298 11991351 -22916219 - MER33 DNA MER1_type -271 53 1 904 244 29 0 chr21 11991360 11991598 -22915972 - L1ME LINE L1 -394 5776 5532 3056 181 22 25 chr21 11991599 11992284 -22915286 + L1MC1 LINE L1 5651 6333 0 187 395 0 13 chr21 11992915 11992991 -22914579 - L2 LINE L2 -14 3258 3184 207 0 0 0 chr21 11993778 11993801 -22913769 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 956 35 0 0 chr21 11993801 11993915 -22913655 - L1PA4 LINE L1 -11 6144 6031 205 156 0 0 chr21 11993990 11994022 -22913548 + CT-rich Low_complexity Low_complexity 2 33 0 198 0 0 0 chr21 11994416 11994438 -22913132 + (TAAAAA)n Simple_repeat Simple_repeat 2 23 0 21 0 0 0 chr21 11995297 11995318 -22912252 + AT_rich Low_complexity Low_complexity 1 21 0 2440 58 0 3 chr21 11995322 11995634 -22911936 + L1PA5 LINE L1 5839 6149 -5 22 35 0 0 chr21 11997474 11997503 -22910067 + AT_rich Low_complexity Low_complexity 1 29 0 2080 132 97 30 chr21 11997800 11998201 -22909369 + MSTA LTR MaLR 1 428 0 288 0 0 0 chr21 11998329 11998361 -22909209 + (CA)n Simple_repeat Simple_repeat 2 33 0 1742 176 0 19 chr21 11998688 11998995 -22908575 + AluJo SINE Alu 12 312 0 2276 119 0 0 chr21 11999018 11999330 -22908240 + AluSx SINE Alu 1 312 0 33 66 0 0 chr21 11999363 11999424 -22908146 + AT_rich Low_complexity Low_complexity 1 61 0 285 225 22 0 chr21 11999852 11999941 -22907629 + (TA)n Simple_repeat Simple_repeat 2 92 0 2380 60 0 7 chr21 12000150 12000449 -22907121 + AluY SINE Alu 1 297 -14 210 122 82 0 chr21 12000720 12000769 -22906801 + (TTAAA)n Simple_repeat Simple_repeat 2 54 0 32 43 0 0 chr21 12000812 12000858 -22906712 + AT_rich Low_complexity Low_complexity 1 46 0 309 177 48 32 chr21 12000858 12000982 -22906588 + (TTATA)n Simple_repeat Simple_repeat 4 129 0 1987 146 7 0 chr21 12002448 12002757 -22904813 - AluY SINE Alu 0 311 1 24 32 0 0 chr21 12002989 12003020 -22904550 + AT_rich Low_complexity Low_complexity 1 31 0 2167 103 0 0 chr21 12003183 12003474 -22904096 + AluSc SINE Alu 1 291 -18 609 314 20 43 chr21 12004264 12004425 -22903145 + MIR SINE MIR 2 156 -106 1746 194 71 49 chr21 12004425 12004934 -22902636 - MLT2B1 LTR ERVL 0 520 1 609 314 20 43 chr21 12004934 12005027 -22902543 + MIR SINE MIR 156 250 -12 249 354 97 46 chr21 12005425 12005838 -22901732 + L2 LINE L2 2084 2517 -797 2208 106 3 0 chr21 12006693 12006985 -22900585 + AluSg SINE Alu 3 295 -15 630 224 85 106 chr21 12007081 12007421 -22900149 + MLT1A2 LTR MaLR 17 349 -25 1077 78 0 0 chr21 12007425 12007566 -22900004 - Alu SINE Alu 0 310 170 393 261 72 14 chr21 12007835 12007973 -22899597 + L1ME4a LINE L1 5944 6089 -32 782 104 130 0 chr21 12009457 12009572 -22897998 + THE1B LTR MaLR 1 130 -234 1765 141 111 21 chr21 12009577 12009911 -22897659 + THE1B LTR MaLR 1 364 0 382 164 0 0 chr21 12010044 12010111 -22897459 - MIR SINE MIR -12 250 184 2219 95 3 0 chr21 12010273 12010569 -22897001 + AluY SINE Alu 1 297 -14 26 74 0 0 chr21 12011246 12011300 -22896270 + AT_rich Low_complexity Low_complexity 1 54 0 1728 166 0 3 chr21 12012017 12012331 -22895239 - AluJb SINE Alu 0 313 1 1347 141 0 5 chr21 12012788 12013024 -22894546 + AluJb SINE Alu 87 321 0 2379 194 11 7 chr21 12013574 12014022 -22893548 - MER44D DNA MER2_type -2 603 282 2482 50 3 0 chr21 12014127 12014425 -22893145 - AluY SINE Alu -12 299 1 1950 144 0 7 chr21 12014432 12014731 -22892839 - AluSx SINE Alu -15 297 1 252 211 0 0 chr21 12014823 12014894 -22892676 + (TA)n Simple_repeat Simple_repeat 1 71 0 358 146 13 13 chr21 12014926 12015001 -22892569 - AluJ/FLAM SINE Alu -240 62 1 2348 162 14 25 chr21 12015099 12015537 -22892033 + Tigger2a DNA MER2_type 2 434 0 1896 156 7 0 chr21 12015710 12015998 -22891572 + AluSq SINE Alu 5 294 -19 212 250 0 0 chr21 12015998 12016038 -22891532 + polypurine Low_complexity Low_complexity 2 41 0 1252 71 0 16 chr21 12016038 12016221 -22891349 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 834 210 14 11 chr21 12016221 12016533 -22891037 + GA-rich Low_complexity Low_complexity 1 312 0 367 176 98 20 chr21 12016534 12016636 -22890934 - Charlie4 DNA MER1_type -1844 117 8 2076 94 0 14 chr21 12018190 12018520 -22889050 + AluSp SINE Alu 1 326 0 30 27 0 0 chr21 12018838 12018875 -22888695 + AT_rich Low_complexity Low_complexity 1 37 0 526 166 43 50 chr21 12019189 12019328 -22888242 - L1 LINE L1 -1396 4750 4613 3185 226 17 41 chr21 12019703 12020903 -22886667 - L1 LINE L1 -857 5289 3981 1424 229 49 6 chr21 12021722 12022072 -22885498 + MLT1A1 LTR MaLR 1 365 0 27 0 0 0 chr21 12022983 12023010 -22884560 + AT_rich Low_complexity Low_complexity 1 27 0 180 190 17 103 chr21 12023092 12023150 -22884420 - MIR SINE MIR 0 262 210 550 309 45 27 chr21 12023162 12023385 -22884185 - MIR SINE MIR -11 251 25 279 0 0 0 chr21 12023521 12023552 -22884018 + (CA)n Simple_repeat Simple_repeat 2 32 0 279 312 141 10 chr21 12023671 12023863 -22883707 + MIR SINE MIR 32 248 -14 194 159 0 68 chr21 12023837 12023881 -22883689 + L2 LINE L2 3268 3308 -5 2592 115 0 0 chr21 12024850 12025214 -22882356 + THE1B LTR MaLR 1 364 0 1287 248 58 23 chr21 12025319 12025746 -22881824 + L1MC4a LINE L1 5440 5881 -1927 27 65 0 26 chr21 12025832 12025867 -22881703 + AT_rich Low_complexity Low_complexity 1 35 -40 1239 141 15 0 chr21 12025867 12026073 -22881497 - L1MA1 LINE L1 -5 6297 6089 27 65 0 26 chr21 12026073 12026114 -22881456 + AT_rich Low_complexity Low_complexity 35 75 0 1561 79 9 0 chr21 12026114 12026330 -22881240 - L1PA6 LINE L1 0 6154 5937 2202 84 0 11 chr21 12027908 12028246 -22879324 - AluY SINE Alu 0 335 1 1867 137 14 0 chr21 12028800 12029124 -22878446 + AluSq SINE Alu 5 332 0 2091 110 3 31 chr21 12029146 12029464 -22878106 - AluSc SINE Alu 0 309 1 319 253 25 0 chr21 12031882 12031961 -22875609 + MIR3 SINE MIR 105 185 -23 1748 156 56 19 chr21 12032132 12032453 -22875117 + MER1B DNA MER1_type 1 333 -4 2425 142 3 0 chr21 12032487 12032860 -22874710 - THE1C LTR MaLR -1 374 1 1799 270 32 12 chr21 12033234 12033738 -22873832 - MLT1E2 LTR MaLR -2 624 111 339 312 42 49 chr21 12034172 12034559 -22873011 + L1ME LINE L1 5341 5726 -436 2123 118 10 13 chr21 12034559 12034872 -22872698 + AluSq SINE Alu 1 312 -1 339 312 42 49 chr21 12034872 12034914 -22872656 + L1ME LINE L1 5726 5767 -395 237 132 0 0 chr21 12034929 12034967 -22872603 + (TA)n Simple_repeat Simple_repeat 1 38 0 2368 71 0 3 chr21 12034967 12035263 -22872307 - AluY SINE Alu -16 295 1 732 196 71 41 chr21 12035527 12035955 -22871615 - Charlie1 DNA MER1_type -260 2501 1963 360 346 97 9 chr21 12036001 12036229 -22871341 + L2 LINE L2 2607 2854 -460 214 198 42 135 chr21 12036584 12036680 -22870890 + L2 LINE L2 3224 3310 -3 327 49 0 0 chr21 12036785 12036826 -22870744 + (TG)n Simple_repeat Simple_repeat 2 42 0 301 301 158 0 chr21 12037195 12037328 -22870242 + L2 LINE L2 1244 1397 -1917 710 191 0 0 chr21 12037446 12037561 -22870009 + FLAM_C SINE Alu 4 118 -15 996 141 20 17 chr21 12037566 12037912 -22869658 + GA-rich Low_complexity Low_complexity 1 347 0 4018 120 87 30 chr21 12037999 12039481 -22868089 + pTR5 LTR ERV1 741 2451 0 2451 62 3 3 chr21 12039880 12040187 -22867383 - AluY SINE Alu -4 307 1 1239 189 12 44 chr21 12041436 12041484 -22866086 + AluJb SINE Alu 72 120 -192 2304 114 0 0 chr21 12041484 12041790 -22865780 - AluSx SINE Alu -6 306 1 1239 189 12 44 chr21 12041790 12041990 -22865580 + AluJb SINE Alu 120 312 0 291 140 0 0 chr21 12042517 12042567 -22865003 + (GA)n Simple_repeat Simple_repeat 1 50 0 1516 231 32 27 chr21 12042986 12043358 -22864212 - MLT1A2 LTR MaLR 0 374 1 24 0 0 0 chr21 12044314 12044338 -22863232 + AT_rich Low_complexity Low_complexity 1 24 0 2272 68 4 0 chr21 12045055 12045381 -22862189 + AluY SINE Alu 1 327 0 344 132 11 33 chr21 12045922 12046013 -22861557 + (TA)n Simple_repeat Simple_repeat 2 90 0 277 296 19 28 chr21 12046014 12046122 -22861448 + GA-rich Low_complexity Low_complexity 1 107 0 432 180 10 10 chr21 12048122 12048222 -22859348 - L1M LINE L1 -760 5414 5315 2966 210 74 18 chr21 12048208 12049056 -22858514 - L1MB7 LINE L1 -31 6153 5258 1627 158 3 64 chr21 12049574 12049904 -22857666 + AluSx SINE Alu 1 310 -2 6963 208 54 61 chr21 12050543 12050884 -22856686 + L1MC3 LINE L1 5197 5539 -2246 2361 75 3 7 chr21 12050884 12051192 -22856378 + AluY SINE Alu 1 307 -4 6963 208 54 61 chr21 12051192 12052820 -22854750 + L1MC3 LINE L1 5539 7142 -643 2015 55 138 11 chr21 12052820 12053095 -22854475 - AluY SINE Alu -1 310 1 6963 208 54 61 chr21 12053095 12053513 -22854057 + L1MC3 LINE L1 7142 7562 -223 180 0 0 0 chr21 12054191 12054211 -22853359 + (TG)n Simple_repeat Simple_repeat 1 20 0 223 208 21 0 chr21 12054815 12054863 -22852707 - MIR3 SINE MIR -12 196 148 2165 122 13 0 chr21 12055198 12055501 -22852069 - AluSg SINE Alu 0 310 4 23 33 0 0 chr21 12055636 12055666 -22851904 + AT_rich Low_complexity Low_complexity 1 30 0 1382 222 54 3 chr21 12056136 12056487 -22851083 + L1MC1 LINE L1 5963 6331 -2 919 256 166 52 chr21 12056701 12057236 -22850334 - MLT1E2 LTR MaLR -30 596 1 1164 106 3 6 chr21 12057258 12057558 -22850012 + THE1B LTR MaLR 1 364 0 300 253 44 22 chr21 12058668 12058759 -22848811 + L1MC4 LINE L1 6611 6703 -1339 234 146 18 18 chr21 12058759 12058785 -22848785 + (TA)n Simple_repeat Simple_repeat 1 26 -29 2266 94 0 3 chr21 12058785 12059072 -22848498 + AluSg SINE Alu 1 286 -24 234 146 18 18 chr21 12059072 12059100 -22848470 + (TA)n Simple_repeat Simple_repeat 25 55 0 183 232 0 0 chr21 12059286 12059342 -22848228 + (TATG)n Simple_repeat Simple_repeat 4 59 0 25 65 0 0 chr21 12059617 12059663 -22847907 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr21 12060353 12060383 -22847187 + AT_rich Low_complexity Low_complexity 1 30 0 1877 158 0 3 chr21 12061005 12061290 -22846280 + AluSg SINE Alu 1 284 -26 207 0 0 0 chr21 12061305 12061328 -22846242 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2800 152 10 28 chr21 12061533 12062039 -22845531 + LOR1a LTR ERV1 1 497 0 453 288 111 65 chr21 12063239 12063590 -22843980 - MER93a LTR ERV1 -1 401 35 3011 154 48 12 chr21 12064020 12064579 -22842991 - LTR1 LTR ERV1 0 785 207 1138 152 72 8 chr21 12064622 12064859 -22842711 - LTR1 LTR ERV1 -533 252 1 1975 105 36 4 chr21 12064957 12065233 -22842337 + AluSq SINE Alu 1 285 -28 456 214 21 62 chr21 12065684 12065899 -22841671 + LTR1B LTR ERV1 1 363 -644 999 239 51 49 chr21 12065976 12066443 -22841127 + LTR28 LTR ERV1 380 745 -81 2322 97 3 0 chr21 12067031 12067331 -22840239 + AluSq SINE Alu 1 301 -12 1290 298 36 69 chr21 12067418 12068055 -22839515 - L3 LINE CR1 -27 1550 935 2403 77 0 26 chr21 12068160 12068473 -22839097 - AluY SINE Alu -6 305 1 258 262 57 74 chr21 12070409 12070531 -22837039 - MIR3 SINE MIR 0 208 89 2292 91 3 3 chr21 12070565 12070861 -22836709 - AluY SINE Alu -15 296 1 2752 153 33 2 chr21 12070945 12071427 -22836143 - LOR1a LTR ERV1 0 497 1 614 248 112 99 chr21 12071719 12072236 -22835334 + LTR41 LTR ERVL 240 763 -10 298 333 83 46 chr21 12072248 12072599 -22834971 + L2 LINE L2 2949 3312 -1 360 122 68 14 chr21 12072733 12072807 -22834763 + MADE1 DNA Mariner 3 80 0 285 128 0 0 chr21 12074255 12074302 -22833268 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 1104 239 69 39 chr21 12074309 12074643 -22832927 - MLT1A2 LTR MaLR -30 344 1 51 51 0 0 chr21 12075136 12075215 -22832355 + AT_rich Low_complexity Low_complexity 1 79 0 1034 171 69 20 chr21 12075618 12075735 -22831835 + MER65A LTR ERV1 3 113 -332 1390 192 128 58 chr21 12075735 12076135 -22831435 - MSTA LTR MaLR 0 428 1 8026 187 24 32 chr21 12076135 12077285 -22830285 - MSTA-int LTR MaLR 0 1651 518 2152 144 0 0 chr21 12077285 12077591 -22829979 - AluSc SINE Alu -3 306 1 8026 187 24 32 chr21 12077591 12078105 -22829465 - MSTA-int LTR MaLR -1133 518 1 1806 179 122 10 chr21 12078105 12078490 -22829080 - MSTA LTR MaLR 0 428 1 1034 171 69 20 chr21 12078490 12078743 -22828827 + MER65A LTR ERV1 112 445 0 2705 221 64 38 chr21 12078773 12079109 -22828461 - L1MD2 LINE L1 -208 6411 6085 1844 160 45 31 chr21 12079109 12079466 -22828104 + THE1B LTR MaLR 1 362 -2 2705 221 64 38 chr21 12079466 12079872 -22827698 - L1MD2 LINE L1 -534 6085 5640 2209 98 0 13 chr21 12079872 12080179 -22827391 - AluY SINE Alu -6 305 3 2705 221 64 38 chr21 12080179 12080386 -22827184 - L1MD2 LINE L1 -979 5640 5440 2344 249 101 42 chr21 12080540 12081878 -22825692 - L1MD2 LINE L1 -5117 1292 2 225 145 48 0 chr21 12082008 12082070 -22825500 + (TTA)n Simple_repeat Simple_repeat 3 67 0 1878 167 0 0 chr21 12082140 12082422 -22825148 + AluSx SINE Alu 1 309 0 244 0 0 0 chr21 12082422 12082449 -22825121 + (TAAAA)n Simple_repeat Simple_repeat 4 180 0 27 62 0 0 chr21 12082640 12082688 -22824882 + AT_rich Low_complexity Low_complexity 1 48 0 301 75 38 0 chr21 12085022 12085075 -22822495 + GA-rich Low_complexity Low_complexity 2 56 0 222 91 0 0 chr21 12086564 12086597 -22820973 + (TA)n Simple_repeat Simple_repeat 2 34 0 608 13 0 0 chr21 12087027 12087102 -22820468 + L1PA3 LINE L1 6078 6152 -3 3268 70 106 141 chr21 12088004 12088708 -22818862 + LTR12 LTR ERV1 15 669 -2 1043 187 70 40 chr21 12088708 12089008 -22818562 + MER33 DNA MER1_type 11 319 -5 2152 96 7 10 chr21 12089296 12089588 -22817982 + AluSq SINE Alu 13 303 -10 279 0 0 0 chr21 12089592 12089623 -22817947 + (CA)n Simple_repeat Simple_repeat 2 32 0 441 0 0 0 chr21 12089622 12089671 -22817899 + (TA)n Simple_repeat Simple_repeat 1 49 0 372 355 61 25 chr21 12089689 12089886 -22817684 - L2 LINE L2 -458 2856 2653 746 264 42 0 chr21 12089968 12090184 -22817386 - MER74A LTR ERVL -158 400 176 413 207 56 8 chr21 12090425 12091007 -22816563 + (TA)n Simple_repeat Simple_repeat 1 610 0 31 26 0 0 chr21 12091051 12091089 -22816481 + AT_rich Low_complexity Low_complexity 1 38 0 404 241 7 48 chr21 12091290 12091435 -22816135 + MER20B DNA MER1_type 188 326 -458 702 183 0 0 chr21 12091467 12091582 -22815988 + FLAM_C SINE Alu 16 130 -13 315 0 0 0 chr21 12091827 12091862 -22815708 + (TG)n Simple_repeat Simple_repeat 2 36 0 1694 129 0 0 chr21 12091863 12092103 -22815467 - AluY SINE Alu -26 285 46 542 219 50 0 chr21 12092365 12092484 -22815086 - MER74A LTR ERVL 0 558 434 930 190 6 0 chr21 12092484 12092647 -22814923 + MSTB1 LTR MaLR 263 426 -6 1993 116 18 0 chr21 12092647 12092959 -22814611 + AluY SINE Alu 1 317 0 325 345 61 15 chr21 12093017 12093281 -22814289 - L2 LINE L2 -1231 2083 1808 214 347 37 78 chr21 12093591 12093833 -22813737 - L2 LINE L2 -1808 1506 1275 2408 152 21 21 chr21 12094717 12095145 -22812425 - Tigger2a DNA MER2_type -6 428 1 295 385 69 9 chr21 12095177 12095408 -22812162 + MIR SINE MIR 5 249 -13 2216 103 0 7 chr21 12095540 12095841 -22811729 + AluY SINE Alu 1 299 -12 396 0 0 0 chr21 12095864 12095908 -22811662 + (CA)n Simple_repeat Simple_repeat 2 45 0 213 39 0 0 chr21 12095907 12095933 -22811637 + (TC)n Simple_repeat Simple_repeat 2 27 0 276 102 0 0 chr21 12096372 12096421 -22811149 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 1351 243 35 32 chr21 12096461 12096802 -22810768 + MLT1A2 LTR MaLR 1 342 -32 659 139 9 0 chr21 12098851 12098966 -22808604 + CT-rich Low_complexity Low_complexity 1 116 0 2127 124 0 0 chr21 12099144 12099435 -22808135 + AluSc SINE Alu 1 291 -18 2271 112 0 0 chr21 12099470 12099766 -22807804 + AluSx SINE Alu 8 303 -9 1665 196 81 54 chr21 12100793 12101238 -22806332 + MER31B LTR ERV1 1 457 -9 21 0 0 0 chr21 12101873 12101894 -22805676 + AT_rich Low_complexity Low_complexity 1 21 0 1591 200 77 55 chr21 12102386 12102841 -22804729 + MER31B LTR ERV1 2 466 0 1949 146 7 3 chr21 12102959 12103268 -22804302 - AluSg SINE Alu 0 310 1 299 295 115 0 chr21 12103656 12103778 -22803792 + MLT1I LTR MaLR 72 207 -202 596 224 36 36 chr21 12104057 12104253 -22803317 + MER39 LTR ERV1 510 705 -2 298 294 48 8 chr21 12104284 12104410 -22803160 + MLT1I LTR MaLR 259 389 -20 2239 82 3 32 chr21 12105095 12105410 -22802160 - AluSc SINE Alu -3 306 1 25 0 0 0 chr21 12106275 12106300 -22801270 + AT_rich Low_complexity Low_complexity 1 25 0 2587 133 27 0 chr21 12106744 12107158 -22800412 - MER57B LTR ERV1 -9 425 1 1319 179 58 52 chr21 12107231 12107556 -22800014 + MLT1B LTR MaLR 3 329 -61 1976 129 4 0 chr21 12107560 12107839 -22799731 + AluSx SINE Alu 1 280 -32 402 162 0 0 chr21 12107843 12107917 -22799653 + GA-rich Low_complexity Low_complexity 2 75 0 434 351 31 5 chr21 12108281 12108472 -22799098 + MLT1H LTR MaLR 71 266 -283 258 312 21 69 chr21 12108567 12108694 -22798876 + MLT1H LTR MaLR 369 487 -62 2142 119 3 0 chr21 12108694 12109027 -22798543 + AluSp SINE Alu 1 334 0 258 312 21 69 chr21 12109027 12109087 -22798483 + MLT1H LTR MaLR 487 548 -1 2315 92 0 13 chr21 12109470 12109775 -22797795 - AluSg SINE Alu -9 301 1 520 250 85 18 chr21 12110539 12110703 -22796867 - MLT1B LTR MaLR -8 459 285 1200 196 11 31 chr21 12110845 12111105 -22796465 - MLT1B LTR MaLR -135 255 1 1712 236 33 29 chr21 12111457 12111978 -22795592 - L1MD3 LINE L1 -31 7964 7442 246 362 9 26 chr21 12112378 12112494 -22795076 + MIR SINE MIR 2 115 -147 1830 200 23 80 chr21 12112496 12112936 -22794634 - MLT2B3 LTR ERVL 0 554 140 676 83 10 0 chr21 12112936 12113032 -22794538 - AluSc SINE Alu -5 304 208 436 18 83 54 chr21 12113035 12113203 -22794367 + (TA)n Simple_repeat Simple_repeat 1 173 0 849 233 0 0 chr21 12113215 12113400 -22794170 + AluJb SINE Alu 125 309 0 31 26 0 0 chr21 12114343 12114381 -22793189 + AT_rich Low_complexity Low_complexity 1 38 0 2288 111 0 0 chr21 12114511 12114817 -22792753 - AluSg SINE Alu -4 306 1 1689 123 6 89 chr21 12114943 12115259 -22792311 - MER4A LTR ERV1 0 664 375 1997 110 0 58 chr21 12115298 12115608 -22791962 - AluSg SINE Alu -18 292 1 654 175 15 7 chr21 12115608 12115745 -22791825 - MER4A LTR ERV1 -526 138 1 257 211 64 73 chr21 12116257 12116366 -22791204 + LTR16A1 LTR ERVL 346 453 -4 684 231 103 5 chr21 12116893 12117088 -22790482 - MER20 DNA MER1_type -2 217 4 1815 55 0 0 chr21 12117112 12117330 -22790240 + AluY SINE Alu 1 218 -93 21 57 0 0 chr21 12117756 12117791 -22789779 + AT_rich Low_complexity Low_complexity 1 35 0 409 312 16 16 chr21 12117807 12117932 -22789638 - L2 LINE L2 0 3313 3189 3153 147 52 94 chr21 12118199 12119018 -22788552 + LTR1 LTR ERV1 1 785 0 205 152 0 0 chr21 12119942 12119975 -22787595 + (CA)n Simple_repeat Simple_repeat 2 34 0 249 167 120 111 chr21 12120041 12120149 -22787421 + MSTB1 LTR MaLR 19 127 -305 2641 103 21 5 chr21 12121880 12122258 -22785312 + MLT2A1 LTR ERVL 1 384 -60 507 17 0 0 chr21 12122258 12122318 -22785252 + (TA)n Simple_repeat Simple_repeat 2 61 0 1115 128 0 0 chr21 12122318 12122467 -22785103 - AluSc SINE Alu -158 151 3 528 175 10 0 chr21 12122471 12122568 -22785002 - L1MD2 LINE L1 -468 5891 5794 25 51 0 0 chr21 12122575 12122614 -22784956 + AT_rich Low_complexity Low_complexity 1 39 0 243 127 14 70 chr21 12122614 12122685 -22784885 + A-rich Low_complexity Low_complexity 5 71 0 982 73 0 8 chr21 12122696 12122819 -22784751 - AluSq SINE Alu -95 218 97 353 60 0 20 chr21 12122832 12122882 -22784688 + MLT2A1 LTR ERVL 405 453 0 1978 119 3 7 chr21 12123362 12123648 -22783922 + AluY SINE Alu 1 285 -26 22 0 0 0 chr21 12123649 12123671 -22783899 + AT_rich Low_complexity Low_complexity 1 22 0 2372 64 0 0 chr21 12123916 12124245 -22783325 - AluY SINE Alu 0 331 3 31 26 0 0 chr21 12124853 12124891 -22782679 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr21 12126427 12126452 -22781118 + AT_rich Low_complexity Low_complexity 1 25 0 441 285 0 29 chr21 12126587 12126724 -22780846 - L1MD2 LINE L1 -233 6126 5994 493 246 6 89 chr21 12126724 12126903 -22780667 + MLT2A2 LTR ERVL 1 164 -289 737 218 85 81 chr21 12126914 12127162 -22780408 + MLT2B1 LTR ERVL 209 513 -7 2152 107 17 0 chr21 12127215 12127505 -22780065 - AluSc SINE Alu -14 295 1 358 244 11 0 chr21 12127514 12127604 -22779966 - L1MD2 LINE L1 -474 5885 5795 180 152 0 0 chr21 12127706 12127739 -22779831 + (CA)n Simple_repeat Simple_repeat 2 34 0 570 54 0 0 chr21 12128053 12128127 -22779443 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 421 361 41 4 chr21 12128157 12128401 -22779169 + HERV16 LTR ERVL 911 1163 -3833 845 268 12 20 chr21 12128895 12129116 -22778454 + MLT1D LTR MaLR 257 504 -1 2152 130 132 5 chr21 12129619 12129997 -22777573 - MSTA LTR MaLR 0 428 3 6502 164 13 30 chr21 12129999 12131173 -22776397 - MSTA-int LTR MaLR 0 1580 427 1585 148 18 0 chr21 12131196 12131474 -22776096 - MSTA-int LTR MaLR -1368 283 1 1804 159 148 5 chr21 12131477 12131849 -22775721 - MSTA LTR MaLR -3 425 1 534 306 83 38 chr21 12131850 12132394 -22775176 + ERVL LTR ERVL 2238 2772 -2713 922 293 109 83 chr21 12132455 12132993 -22774577 + MLT1E LTR MaLR 17 567 0 257 245 88 59 chr21 12133390 12133492 -22774078 + ERVL LTR ERVL 3067 3171 -2593 776 347 52 40 chr21 12134410 12134964 -22772606 + ERVL LTR ERVL 4084 4644 -1120 2252 115 3 0 chr21 12134969 12135273 -22772297 - AluSp SINE Alu -8 305 1 2196 82 3 31 chr21 12135922 12136240 -22771330 - AluY SINE Alu -2 309 1 1367 163 77 77 chr21 12136450 12136776 -22770794 - Tigger1 DNA MER2_type -2092 326 1 5437 40 0 1 chr21 12137521 12138205 -22769365 - L1PA4 LINE L1 0 6155 5485 2221 117 0 0 chr21 12138671 12138969 -22768601 - AluSx SINE Alu -14 298 1 186 224 0 0 chr21 12139095 12139144 -22768426 + (CATA)n Simple_repeat Simple_repeat 2 50 0 305 292 117 0 chr21 12139168 12139288 -22768282 - L2 LINE L2 -1 3312 3179 208 333 54 9 chr21 12139877 12139988 -22767582 - L2 LINE L2 -361 2952 2837 1840 121 57 0 chr21 12140643 12140925 -22766645 + AluSx SINE Alu 1 298 -14 22 35 0 0 chr21 12142086 12142115 -22765455 + AT_rich Low_complexity Low_complexity 1 29 0 815 125 7 0 chr21 12142285 12142421 -22765149 + L1MA4 LINE L1 6158 6294 -6 21 36 0 0 chr21 12143533 12143561 -22764009 + AT_rich Low_complexity Low_complexity 1 28 0 360 167 56 0 chr21 12143998 12144088 -22763482 - L1MB4 LINE L1 0 6180 6086 631 250 19 6 chr21 12144261 12144417 -22763153 + MER5A DNA MER1_type 32 189 0 2652 23 3 0 chr21 12145302 12145604 -22761966 - AluY SINE Alu -8 303 1 489 341 29 0 chr21 12145993 12146166 -22761404 - MIR SINE MIR -60 202 25 30 69 0 0 chr21 12146311 12146369 -22761201 + AT_rich Low_complexity Low_complexity 1 58 0 1343 167 23 17 chr21 12147992 12148292 -22759278 + L1MA9 LINE L1 6011 6312 0 4281 152 37 51 chr21 12148504 12149342 -22758228 + LTR1B LTR ERV1 1 826 0 321 287 75 0 chr21 12150235 12150329 -22757241 - MIR SINE MIR -76 186 86 4658 170 26 21 chr21 12151027 12152226 -22755344 + L1PB4 LINE L1 4947 6156 0 566 269 77 16 chr21 12152944 12153126 -22754444 + MIR SINE MIR 5 197 -65 1948 73 4 23 chr21 12153761 12154022 -22753548 + AluY SINE Alu 40 295 -16 186 208 0 0 chr21 12154762 12154810 -22752760 + (TG)n Simple_repeat Simple_repeat 1 48 0 2179 92 0 0 chr21 12155454 12155736 -22751834 - AluSc SINE Alu -7 302 21 2125 100 7 4 chr21 12157428 12157744 -22749826 - AluY SINE Alu 0 317 1 33 90 0 0 chr21 12158378 12158467 -22749103 + AT_rich Low_complexity Low_complexity 1 89 0 2273 114 0 0 chr21 12159019 12159316 -22748254 - AluSc SINE Alu -12 297 1 267 59 0 0 chr21 12159316 12159350 -22748220 - L1P LINE L1 -727 5427 5394 5474 61 0 0 chr21 12159351 12160044 -22747526 + L1PA7 LINE L1 5459 6151 -3 24 32 0 0 chr21 12160050 12160081 -22747489 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 12161272 12161294 -22746276 + AT_rich Low_complexity Low_complexity 1 22 0 467 220 23 12 chr21 12161834 12162007 -22745563 + GA-rich Low_complexity Low_complexity 4 178 0 1973 151 3 0 chr21 12162824 12163122 -22744448 + AluSx SINE Alu 5 303 -9 880 250 101 32 chr21 12163125 12163505 -22744065 - LTR40c LTR ERVL -12 450 63 231 189 0 0 chr21 12164625 12164678 -22742892 + CT-rich Low_complexity Low_complexity 2 54 0 326 285 57 16 chr21 12164754 12164877 -22742693 - MIR SINE MIR -56 206 79 2300 67 0 11 chr21 12164931 12165244 -22742326 + AluY SINE Alu 3 312 0 27 0 0 0 chr21 12165736 12165763 -22741807 + AT_rich Low_complexity Low_complexity 1 27 0 2180 93 3 0 chr21 12165878 12166178 -22741392 + AluSx SINE Alu 1 301 -11 589 232 52 19 chr21 12167439 12167594 -22739976 + LTR50 LTR ERVL 1 160 -635 1739 133 54 43 chr21 12168010 12168379 -22739191 + THE1C LTR MaLR 2 374 -1 990 251 30 39 chr21 12169081 12169416 -22738154 - MLT2C1 LTR ERVL -65 332 1 681 330 43 75 chr21 12169512 12169555 -22738015 + ERVL LTR ERVL 729 772 -4882 180 0 0 0 chr21 12169555 12169575 -22737995 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 681 330 43 75 chr21 12169575 12169787 -22737783 + ERVL LTR ERVL 772 989 -4665 923 208 41 129 chr21 12169787 12170297 -22737273 + MER4C LTR ERV1 1 465 0 681 330 43 75 chr21 12170297 12170756 -22736814 + ERVL LTR ERVL 989 1421 -4233 3793 152 52 90 chr21 12172450 12172681 -22734889 + MER4D LTR ERV1 1 239 -664 2307 104 0 7 chr21 12172681 12172990 -22734580 + AluY SINE Alu 1 307 -4 3793 152 52 90 chr21 12172990 12173696 -22733874 + MER4D LTR ERV1 239 903 0 3772 112 30 28 chr21 12173827 12174426 -22733144 - MER4A LTR ERV1 0 600 1 22 0 0 0 chr21 12174681 12174703 -22732867 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr21 12175063 12175085 -22732485 + AT_rich Low_complexity Low_complexity 1 22 0 225 349 72 0 chr21 12175115 12175198 -22732372 + L2 LINE L2 3225 3313 0 22 56 0 0 chr21 12175525 12175561 -22732009 + AT_rich Low_complexity Low_complexity 1 36 0 31 58 0 0 chr21 12175768 12175820 -22731750 + AT_rich Low_complexity Low_complexity 1 52 0 1490 210 78 19 chr21 12175896 12176268 -22731302 + MSTD LTR MaLR 3 396 0 234 0 0 0 chr21 12177045 12177071 -22730499 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2167 79 0 14 chr21 12177075 12177365 -22730205 - AluY SINE Alu -25 286 1 2088 215 15 12 chr21 12177710 12178128 -22729442 - MSTB LTR MaLR -6 411 1 182 203 0 17 chr21 12178326 12178385 -22729185 + (TA)n Simple_repeat Simple_repeat 2 59 0 29 0 0 0 chr21 12178444 12178473 -22729097 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr21 12178557 12178600 -22728970 + AT_rich Low_complexity Low_complexity 1 43 0 2101 126 0 0 chr21 12179227 12179521 -22728049 - AluSg SINE Alu -16 294 1 2769 7 0 0 chr21 12179792 12180093 -22727477 + AluYa5 SINE Alu 1 301 -10 636 308 22 0 chr21 12180195 12180380 -22727190 + MER5A DNA MER1_type 1 189 0 250 302 32 24 chr21 12180475 12180601 -22726969 + MIR SINE MIR 75 201 -61 186 167 0 0 chr21 12181130 12181166 -22726404 + (CA)n Simple_repeat Simple_repeat 1 36 0 32 75 0 0 chr21 12181204 12181271 -22726299 + AT_rich Low_complexity Low_complexity 1 67 0 257 164 115 0 chr21 12182352 12182413 -22725157 - MLT1I LTR MaLR -23 386 319 1153 192 28 66 chr21 12182563 12182850 -22724720 - MER68 LTR ERV1 0 562 287 2375 84 3 0 chr21 12185276 12185575 -22721995 - AluSg SINE Alu -6 304 5 351 113 0 0 chr21 12185648 12185701 -22721869 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 30 27 0 0 chr21 12185918 12185955 -22721615 + AT_rich Low_complexity Low_complexity 1 37 0 402 258 40 112 chr21 12186041 12186240 -22721330 - MIR SINE MIR -65 143 17 550 310 65 16 chr21 12186540 12186654 -22720916 + L2 LINE L2 1584 1691 -1623 276 30 0 0 chr21 12186654 12186687 -22720883 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 550 310 65 16 chr21 12186687 12186882 -22720688 + L2 LINE L2 1691 1908 -1406 330 257 0 0 chr21 12187051 12187121 -22720449 + L2 LINE L2 3244 3313 0 2948 195 29 4 chr21 12187684 12188243 -22719327 + Tigger7 DNA MER2_type 1 573 -160 972 160 34 10 chr21 12188244 12188450 -22719120 + Tigger7 DNA MER2_type 2275 2485 -2 21 67 0 40 chr21 12190612 12190687 -22716883 + AT_rich Low_complexity Low_complexity 1 72 0 292 330 102 34 chr21 12191153 12191389 -22716181 - MIR SINE MIR -6 256 5 1129 228 50 52 chr21 12191738 12192203 -22715367 - MER89 LTR ERV1 -31 528 2 230 203 0 14 chr21 12192798 12192867 -22714703 + CT-rich Low_complexity Low_complexity 1 68 0 755 223 0 89 chr21 12192894 12193058 -22714512 + MLT1A2 LTR MaLR 2 142 -232 1952 89 17 14 chr21 12193058 12193351 -22714219 + L1PA10 LINE L1 5871 6164 -4 755 223 0 89 chr21 12193351 12193410 -22714160 + MLT1A2 LTR MaLR 142 205 -169 28 0 0 0 chr21 12194379 12194407 -22713163 + AT_rich Low_complexity Low_complexity 1 28 0 487 250 0 23 chr21 12194553 12194681 -22712889 - LTR18B LTR ERVL -4 610 486 36592 151 24 20 chr21 12194882 12200824 -22706746 - HERVL18 LTR ERVL 0 6047 82 14045 184 19 22 chr21 12200843 12204631 -22702939 - L1MA3 LINE L1 -448 7276 3485 2238 120 0 0 chr21 12204631 12204940 -22702630 - AluSg1 SINE Alu 0 309 1 14045 184 19 22 chr21 12204940 12205347 -22702223 - L1MA3 LINE L1 -4239 3485 3078 3792 159 15 48 chr21 12205347 12206007 -22701563 + L1MA3 LINE L1 5509 6139 -166 1945 118 4 0 chr21 12206007 12206270 -22701300 + AluSp SINE Alu 31 294 -19 3792 159 15 48 chr21 12206270 12206419 -22701151 + L1MA3 LINE L1 6139 6291 -14 25 65 0 0 chr21 12206616 12206662 -22700908 + AT_rich Low_complexity Low_complexity 1 46 0 1952 150 7 0 chr21 12206819 12207113 -22700457 - AluSx SINE Alu -16 296 1 354 162 0 15 chr21 12207673 12207741 -22699829 + L1M1 LINE L1 5489 5555 -750 627 276 52 5 chr21 12207759 12207951 -22699619 - L1MC4a LINE L1 -1880 5928 5728 24 53 0 0 chr21 12209054 12209092 -22698478 + AT_rich Low_complexity Low_complexity 1 38 0 1223 210 65 46 chr21 12210020 12210203 -22697367 + MSTD LTR MaLR 3 196 -200 2236 75 0 34 chr21 12210203 12210525 -22697045 + AluY SINE Alu 1 311 0 1223 210 65 46 chr21 12210525 12210665 -22696905 + MSTD LTR MaLR 196 332 -64 2338 56 10 13 chr21 12210668 12210970 -22696600 - AluY SINE Alu -6 305 5 23 68 0 0 chr21 12211007 12211051 -22696519 + AT_rich Low_complexity Low_complexity 1 44 0 1352 136 50 5 chr21 12211267 12211487 -22696083 + MER30 DNA MER1_type 1 230 0 2363 69 7 0 chr21 12212483 12212772 -22694798 - AluY SINE Alu -20 291 1 828 267 34 45 chr21 12214526 12214889 -22692681 + MER45C DNA AcHobo 1 395 -558 1413 251 57 26 chr21 12215007 12215497 -22692073 - MLT1D LTR MaLR 0 505 1 950 206 0 11 chr21 12215553 12215737 -22691833 + FRAM SINE Alu 1 174 -2 820 243 90 118 chr21 12216150 12216218 -22691352 - MLT1D LTR MaLR 0 505 437 1503 211 3 10 chr21 12216218 12216526 -22691044 + AluJo SINE Alu 7 312 0 820 243 90 118 chr21 12216526 12216573 -22690997 - MLT1D LTR MaLR -68 437 390 1673 171 7 4 chr21 12216573 12216853 -22690717 + AluJb SINE Alu 7 287 -25 820 243 90 118 chr21 12216853 12217234 -22690336 - MLT1D LTR MaLR -115 390 22 2135 127 14 35 chr21 12217436 12217806 -22689764 + THE1B LTR MaLR 3 364 0 3072 101 16 2 chr21 12217806 12218294 -22689276 + THE1B-int LTR MaLR 1 488 -1150 2116 83 0 0 chr21 12218354 12218630 -22688940 - THE1-int LTR MaLR -89 1491 1216 1590 40 0 0 chr21 12218645 12218843 -22688727 + THE1B-int LTR MaLR 1383 1580 0 1974 148 30 39 chr21 12218846 12219210 -22688360 + THE1B LTR MaLR 4 364 0 1980 89 51 51 chr21 12219515 12219808 -22687762 - AluSc SINE Alu -16 293 1 2527 60 0 10 chr21 12220164 12220478 -22687092 - AluY SINE Alu 0 311 1 500 270 68 60 chr21 12220942 12221190 -22686380 + MIR SINE MIR 4 253 -9 1724 167 7 10 chr21 12223463 12223756 -22683814 - AluJb SINE Alu -20 292 1 721 183 0 0 chr21 12223865 12223980 -22683590 + FLAM_C SINE Alu 8 122 -21 1963 246 45 31 chr21 12225087 12225719 -22681851 - L1MD3 LINE L1 -98 7882 7060 1640 219 5 20 chr21 12225719 12225928 -22681642 - MLT1B LTR MaLR -4 386 184 279 0 0 0 chr21 12225928 12225959 -22681611 + (TC)n Simple_repeat Simple_repeat 2 32 0 1640 219 5 20 chr21 12225959 12226141 -22681429 - MLT1B LTR MaLR -206 184 1 1963 246 45 31 chr21 12226141 12226401 -22681169 - L1MD3 LINE L1 -920 7060 6805 412 245 56 14 chr21 12227101 12227244 -22680326 + MER103 DNA DNA 8 156 -10 266 200 36 0 chr21 12228325 12228380 -22679190 + (TATG)n Simple_repeat Simple_repeat 3 59 0 2333 59 3 0 chr21 12228739 12229066 -22678504 - AluY SINE Alu 0 328 1 1938 161 0 0 chr21 12230113 12230412 -22677158 + AluSx SINE Alu 1 299 -13 1512 172 0 75 chr21 12230922 12231241 -22676329 + AluJo SINE Alu 1 295 -17 268 227 91 23 chr21 12231541 12231629 -22675941 + L1MC4a LINE L1 6574 6667 -1141 1995 134 0 0 chr21 12231771 12232048 -22675522 + AluSc SINE Alu 1 277 -32 212 0 36 0 chr21 12232051 12232079 -22675491 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 657 244 63 60 chr21 12232082 12232397 -22675173 + L1MC5 LINE L1 6923 7238 -723 1835 190 3 6 chr21 12233114 12233440 -22674130 + Tigger1 DNA MER2_type 26 350 -2068 912 164 18 12 chr21 12233634 12233799 -22673771 + THE1B LTR MaLR 184 349 -15 262 278 104 21 chr21 12234147 12234291 -22673279 - L1ME LINE L1 -5867 203 48 2459 124 8 6 chr21 12234295 12234658 -22672912 - THE1B LTR MaLR 0 364 1 9725 122 51 3 chr21 12234658 12236165 -22671405 - THE1B-int LTR MaLR 0 1580 2 2507 106 19 6 chr21 12236166 12236525 -22671045 - THE1B LTR MaLR 0 364 1 197 105 0 26 chr21 12236674 12236712 -22670858 + (TA)n Simple_repeat Simple_repeat 2 38 0 853 251 25 20 chr21 12236818 12237021 -22670549 - MER58A DNA MER1_type -15 209 6 1773 112 56 0 chr21 12237110 12237360 -22670210 + AluSq SINE Alu 23 286 -27 387 0 0 0 chr21 12237479 12237522 -22670048 + (TG)n Simple_repeat Simple_repeat 2 44 0 262 338 131 7 chr21 12237898 12238043 -22669527 - L2 LINE L2 -10 3262 3100 22 88 0 0 chr21 12238255 12238312 -22669258 + AT_rich Low_complexity Low_complexity 1 57 0 1948 112 63 0 chr21 12239571 12239857 -22667713 - AluSq SINE Alu -5 308 5 1288 205 39 39 chr21 12240249 12240561 -22667009 + AluJo SINE Alu 1 312 0 1948 225 46 11 chr21 12241433 12241890 -22665680 + MER67A LTR ERV1 71 543 0 3345 225 35 7 chr21 12242710 12243366 -22664204 - L1MB7 LINE L1 -18 6166 5481 2010 87 55 3 chr21 12243366 12243655 -22663915 - AluY SINE Alu -7 304 1 3345 225 35 7 chr21 12243655 12243828 -22663742 - L1MB7 LINE L1 -703 5481 5314 335 187 27 0 chr21 12243831 12243913 -22663657 + L1M LINE L1 5330 5413 -757 251 140 0 20 chr21 12243915 12243965 -22663605 + L1M LINE L1 5258 5306 -860 1231 222 38 0 chr21 12243962 12244304 -22663266 - L1MB7 LINE L1 -829 5317 4963 763 172 0 0 chr21 12244309 12244437 -22663133 + MLT2B2 LTR ERVL 1 128 -387 1993 179 55 26 chr21 12244438 12244935 -22662635 + MLT2A2 LTR ERVL 1 517 -37 432 0 0 0 chr21 12244935 12244983 -22662587 + (TA)n Simple_repeat Simple_repeat 2 49 0 1993 179 55 26 chr21 12244983 12245021 -22662549 + MLT2A2 LTR ERVL 517 552 -2 1044 180 38 16 chr21 12245021 12245358 -22662212 + MLT2B2 LTR ERVL 123 515 0 385 325 52 14 chr21 12245358 12245570 -22662000 - L1MB7 LINE L1 -1184 4962 4743 428 255 28 0 chr21 12245579 12245685 -22661885 + L1M4 LINE L1 4499 4607 -1539 2323 233 25 63 chr21 12245778 12246490 -22661080 - L1M4 LINE L1 -5482 1060 376 681 209 77 22 chr21 12246498 12246680 -22660890 - LTR47A LTR ERVL 0 452 261 1135 263 20 51 chr21 12246910 12247301 -22660269 - L1M4 LINE L1 -6163 379 1 726 28 0 28 chr21 12247484 12247592 -22659978 + (TA)n Simple_repeat Simple_repeat 1 105 0 807 229 22 40 chr21 12248233 12248508 -22659062 - L1MC4 LINE L1 -4 8038 7769 1761 258 51 4 chr21 12248507 12249014 -22658556 - L1MC4a LINE L1 -190 7618 7088 2418 143 0 3 chr21 12250243 12250607 -22656963 + THE1B LTR MaLR 1 363 -1 9477 127 36 37 chr21 12250609 12252188 -22655382 + THE1B-int LTR MaLR 2 1578 -2 2121 139 11 37 chr21 12252190 12252564 -22655006 + THE1B LTR MaLR 1 364 0 26 93 0 0 chr21 12252650 12252725 -22654845 + AT_rich Low_complexity Low_complexity 1 75 0 201 273 50 61 chr21 12252835 12252934 -22654636 + MIR SINE MIR 38 135 -73 1100 223 123 26 chr21 12253061 12253402 -22654168 + MLT1A2 LTR MaLR 1 374 0 1634 187 0 3 chr21 12253594 12253900 -22653670 - AluJb SINE Alu 0 307 3 293 299 58 92 chr21 12255268 12255475 -22652095 + MIR3 SINE MIR 3 202 -6 21 0 0 0 chr21 12255629 12255650 -22651920 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 12256488 12256516 -22651054 + AT_rich Low_complexity Low_complexity 1 28 0 539 276 78 45 chr21 12256851 12257094 -22650476 - HAL1 LINE L1 -47 2460 2210 461 296 45 40 chr21 12257408 12257584 -22649986 + MIR3 SINE MIR 29 205 -3 501 128 0 0 chr21 12258370 12258448 -22649122 + L1PB4 LINE L1 6077 6154 -2 228 303 92 0 chr21 12259220 12259296 -22648274 - L2 LINE L2 -20 3252 3170 23 68 0 0 chr21 12260536 12260580 -22646990 + AT_rich Low_complexity Low_complexity 1 44 0 572 227 8 23 chr21 12260759 12260891 -22646679 - AluJo SINE Alu -76 236 107 476 52 10 62 chr21 12264252 12264348 -22643222 + (GAAA)n Simple_repeat Simple_repeat 4 94 0 463 263 51 61 chr21 12265009 12265302 -22642268 + L1ME LINE L1 740 1029 -5176 358 315 39 9 chr21 12265534 12265766 -22641804 + L1ME LINE L1 1136 1374 -4841 189 0 0 0 chr21 12266020 12266041 -22641529 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 358 296 32 24 chr21 12266051 12266176 -22641394 + L1ME LINE L1 2093 2218 -4178 992 203 5 0 chr21 12266187 12266389 -22641181 + L1PBa LINE L1 2 204 -6659 9708 132 23 10 chr21 12266380 12268067 -22639503 + L1PBa LINE L1 1113 2880 -3983 975 240 119 12 chr21 12268313 12268742 -22638828 + L1ME LINE L1 2757 3231 -2984 28 0 0 0 chr21 12268858 12268886 -22638684 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr21 12268997 12269025 -22638545 + AT_rich Low_complexity Low_complexity 1 28 0 1807 94 8 0 chr21 12269099 12269334 -22638236 + AluSq SINE Alu 1 237 -76 26 50 0 0 chr21 12269757 12269797 -22637773 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr21 12270558 12270579 -22636991 + AT_rich Low_complexity Low_complexity 1 21 0 223 250 0 18 chr21 12271578 12271634 -22635936 - L2 LINE L2 -36 3236 3182 239 289 52 99 chr21 12271858 12272069 -22635501 - L2 LINE L2 -341 2973 2773 1628 228 22 3 chr21 12272252 12272608 -22634962 + MLT1A1 LTR MaLR 3 365 0 437 322 61 9 chr21 12272681 12272895 -22634675 + LTR33 LTR ERVL 294 518 -3 1731 125 92 25 chr21 12273239 12273520 -22634050 + AluSx SINE Alu 1 300 -12 491 56 0 14 chr21 12274635 12274706 -22632864 - Alu SINE Alu -14 297 228 1220 231 56 6 chr21 12277002 12277326 -22630244 + MLT1H LTR MaLR 10 349 -200 21 0 0 0 chr21 12277833 12277854 -22629716 + AT_rich Low_complexity Low_complexity 1 21 0 2240 107 7 0 chr21 12278581 12278889 -22628681 + AluSx SINE Alu 1 310 -2 234 0 0 0 chr21 12280564 12280590 -22626980 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1633 113 0 0 chr21 12280983 12281204 -22626366 - AluSg/x SINE Alu -26 286 66 294 29 0 0 chr21 12281205 12281240 -22626330 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 558 208 7 65 chr21 12281250 12281404 -22626166 - MLT1C LTR MaLR -314 153 9 216 274 65 0 chr21 12281641 12281703 -22625867 + MIR SINE MIR 79 144 -64 1634 154 3 66 chr21 12282130 12282448 -22625122 + AluSx SINE Alu 1 298 -14 211 324 10 0 chr21 12282464 12282566 -22625004 + (TA)n Simple_repeat Simple_repeat 1 103 0 186 43 0 0 chr21 12283061 12283084 -22624486 + (T)n Simple_repeat Simple_repeat 1 23 0 2274 68 0 0 chr21 12283160 12283453 -22624117 - L1PA6 LINE L1 -95 6059 5767 268 286 42 17 chr21 12283453 12283572 -22623998 - Charlie7 DNA MER1_type -2137 475 354 23 33 0 0 chr21 12283782 12283812 -22623758 + AT_rich Low_complexity Low_complexity 1 30 0 360 302 67 22 chr21 12284916 12285095 -22622475 - MIR SINE MIR -10 252 66 817 223 23 41 chr21 12285217 12285437 -22622133 - MER20 DNA MER1_type 0 219 4 216 38 0 94 chr21 12286505 12286558 -22621012 + (CAAAAA)n Simple_repeat Simple_repeat 2 49 0 32 26 0 0 chr21 12287330 12287369 -22620201 + AT_rich Low_complexity Low_complexity 1 39 0 2199 176 60 2 chr21 12287654 12288057 -22619513 + MSTB LTR MaLR 1 426 0 2133 121 3 0 chr21 12288079 12288376 -22619194 + AluSq SINE Alu 1 298 -15 219 88 0 0 chr21 12288376 12288410 -22619160 + (CATA)n Simple_repeat Simple_repeat 3 36 0 330 365 89 13 chr21 12288419 12288813 -22618757 + L2 LINE L2 1516 1939 -1375 390 369 54 16 chr21 12289491 12289805 -22617765 + L2 LINE L2 2370 2695 -619 25 65 0 0 chr21 12291531 12291577 -22615993 + AT_rich Low_complexity Low_complexity 1 46 0 1643 140 238 11 chr21 12291600 12291949 -22615621 - MSTA LTR MaLR 0 428 1 189 107 0 0 chr21 12292043 12292071 -22615499 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 52 96 0 0 chr21 12292142 12292299 -22615271 + AT_rich Low_complexity Low_complexity 1 157 0 218 158 0 35 chr21 12292305 12292362 -22615208 + T-rich Low_complexity Low_complexity 6 60 0 2286 61 6 64 chr21 12293459 12293788 -22613782 - AluY SINE Alu -1 310 1 186 43 0 0 chr21 12294392 12294415 -22613155 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1522 175 7 0 chr21 12294416 12294707 -22612863 - L1P LINE L1 -851 5295 5003 5643 92 12 9 chr21 12294707 12295504 -22612066 + L1PA11 LINE L1 5374 6173 -1 1989 120 0 26 chr21 12296009 12296317 -22611253 - AluSg SINE Alu -10 300 1 225 232 74 42 chr21 12297927 12298011 -22609559 - MER5B DNA MER1_type -4 174 85 5991 86 34 14 chr21 12298011 12299038 -22608532 - L1PA8A LINE L1 0 6131 5102 285 330 28 9 chr21 12299048 12299157 -22608413 + MER5A DNA MER1_type 55 165 -24 21 0 0 0 chr21 12299366 12299387 -22608183 + AT_rich Low_complexity Low_complexity 1 21 0 811 215 66 60 chr21 12299705 12300061 -22607509 + MLT2B2 LTR ERVL 50 489 -26 309 342 0 8 chr21 12300640 12300757 -22606813 - MIR SINE MIR -73 189 74 1769 177 3 26 chr21 12301798 12302143 -22605427 + MER1B DNA MER1_type 1 337 0 716 111 7 0 chr21 12302290 12302425 -22605145 + (TC)n Simple_repeat Simple_repeat 1 136 0 1222 219 8 8 chr21 12302790 12303037 -22604533 - MLT1C LTR MaLR 0 467 221 325 185 0 15 chr21 12303145 12303210 -22604360 - MLT1C LTR MaLR -359 108 45 351 0 0 0 chr21 12303211 12303250 -22604320 + (CA)n Simple_repeat Simple_repeat 2 40 0 227 30 0 30 chr21 12303260 12303293 -22604277 + (TA)n Simple_repeat Simple_repeat 2 33 0 230 133 22 0 chr21 12303294 12303339 -22604231 + LTR66 LTR ERVL 172 217 -393 427 176 11 33 chr21 12303352 12303534 -22604036 + (TA)n Simple_repeat Simple_repeat 2 179 0 234 81 0 0 chr21 12303545 12303582 -22603988 + (CA)n Simple_repeat Simple_repeat 2 38 0 589 360 59 25 chr21 12305143 12305535 -22602035 - HERVL LTR ERVL -1145 4509 4105 651 296 63 63 chr21 12305587 12305778 -22601792 - HERVL LTR ERVL -1732 4032 3842 2509 136 3 0 chr21 12305778 12306152 -22601418 + THE1C LTR MaLR 1 375 0 651 296 63 63 chr21 12306152 12306470 -22601100 - HERVL LTR ERVL -1921 3843 3523 356 336 117 25 chr21 12306802 12307204 -22600366 - HERVL LTR ERVL -2588 3066 2628 245 185 0 0 chr21 12307901 12307955 -22599615 + L1MC4 LINE L1 7987 8040 -2 183 80 0 0 chr21 12307974 12307999 -22599571 + (GA)n Simple_repeat Simple_repeat 2 26 0 225 280 116 71 chr21 12308011 12308236 -22599334 + L2 LINE L2 1607 1841 -1473 282 253 24 36 chr21 12308262 12308345 -22599225 + L2 LINE L2 2347 2428 -886 637 297 98 75 chr21 12308347 12308778 -22598792 + L2 LINE L2 2601 3057 -256 1826 106 91 7 chr21 12308778 12309052 -22598518 - AluSx SINE Alu -15 297 1 637 297 98 75 chr21 12309052 12309311 -22598259 + L2 LINE L2 3057 3309 -4 23 68 0 0 chr21 12309495 12309539 -22598031 + AT_rich Low_complexity Low_complexity 1 44 0 3715 148 25 0 chr21 12309699 12310353 -22597217 - L1MA4 LINE L1 -6 6294 5625 4457 187 31 3 chr21 12310371 12311325 -22596245 + L1 LINE L1 2982 3962 -2184 1596 152 64 17 chr21 12311355 12311705 -22595865 + MER67C LTR ERV1 33 398 -244 23 0 0 0 chr21 12311896 12311919 -22595651 + AT_rich Low_complexity Low_complexity 1 23 0 218 310 9 0 chr21 12311994 12312107 -22595463 + (TA)n Simple_repeat Simple_repeat 1 114 0 32 26 0 0 chr21 12312175 12312214 -22595356 + AT_rich Low_complexity Low_complexity 1 39 0 941 203 33 44 chr21 12312536 12312946 -22594624 + MLT1B LTR MaLR 10 467 0 22 70 0 0 chr21 12313091 12313134 -22594436 + AT_rich Low_complexity Low_complexity 1 43 0 764 204 38 14 chr21 12314302 12314513 -22593057 + LTR37A LTR ERV1 209 424 -2 228 222 0 0 chr21 12314737 12314782 -22592788 + (TG)n Simple_repeat Simple_repeat 1 45 0 225 95 4 12 chr21 12315790 12316021 -22591549 + AluSp SINE Alu 1 303 0 307 216 136 0 chr21 12316052 12316140 -22591430 - MIR SINE MIR -90 172 73 13085 193 38 15 chr21 12316227 12321013 -22586557 + L1PB1 LINE L1 3 4676 -2191 189 0 0 0 chr21 12321013 12321034 -22586536 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 13085 193 38 15 chr21 12321034 12321938 -22585632 + L1PB1 LINE L1 4676 5557 -1310 198 0 0 0 chr21 12321938 12321960 -22585610 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 13085 193 38 15 chr21 12321960 12322783 -22584787 + L1PB1 LINE L1 5557 6866 -1 421 385 71 8 chr21 12322921 12323173 -22584397 + L2 LINE L2 3005 3272 0 22 56 0 0 chr21 12323380 12323416 -22584154 + AT_rich Low_complexity Low_complexity 1 36 0 305 279 29 19 chr21 12325464 12325568 -22582002 + MLT1I LTR MaLR 291 395 -14 259 313 87 0 chr21 12325660 12325775 -22581795 + MIR SINE MIR 129 253 -9 228 111 0 0 chr21 12325809 12325845 -22581725 + (CTA)n Simple_repeat Simple_repeat 1 36 0 244 315 0 0 chr21 12325881 12325954 -22581616 + MIR SINE MIR 59 131 -131 540 195 42 6 chr21 12327833 12328053 -22579517 - MLT1D LTR MaLR 0 505 245 234 0 0 0 chr21 12328069 12328095 -22579475 + (TC)n Simple_repeat Simple_repeat 1 26 0 1541 169 11 3 chr21 12329161 12329445 -22578125 + MST-int LTR MaLR 195 480 -1171 13774 203 28 12 chr21 12329444 12332564 -22575006 - L1P LINE L1 -843 5303 2135 216 0 0 0 chr21 12332948 12332972 -22574598 + (A)n Simple_repeat Simple_repeat 1 24 0 1474 211 53 27 chr21 12333816 12334229 -22573341 + MLT2B2 LTR ERVL 1 477 -38 249 33 0 0 chr21 12334229 12334259 -22573311 + (TA)n Simple_repeat Simple_repeat 2 31 0 1474 211 53 27 chr21 12334259 12334290 -22573280 + MLT2B2 LTR ERVL 477 506 -9 21 36 0 0 chr21 12334564 12334592 -22572978 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr21 12335220 12335245 -22572325 + (TA)n Simple_repeat Simple_repeat 2 26 0 504 232 24 0 chr21 12336043 12336168 -22571402 + L1 LINE L1 4624 4751 -1395 1734 122 19 4 chr21 12336168 12336439 -22571131 + L1PA10 LINE L1 5877 6151 -17 209 128 0 26 chr21 12336441 12336480 -22571090 + (TA)n Simple_repeat Simple_repeat 1 38 0 25 31 0 0 chr21 12336481 12336513 -22571057 + AT_rich Low_complexity Low_complexity 1 32 0 975 172 20 25 chr21 12336639 12336837 -22570733 + L1PA16 LINE L1 5968 6164 -2 298 306 32 76 chr21 12338123 12338213 -22569357 + MIR3 SINE MIR 50 132 -76 2634 186 42 4 chr21 12338213 12338735 -22568835 - MER34 LTR ERV1 0 542 1 298 306 32 76 chr21 12338735 12338801 -22568769 + MIR3 SINE MIR 132 199 -9 583 263 51 47 chr21 12342079 12342315 -22565255 + MLT1H1 LTR MaLR 291 527 -28 523 139 0 0 chr21 12343283 12343369 -22564201 - MSTA LTR MaLR -342 86 1 1192 131 6 0 chr21 12344055 12344223 -22563347 - AluSg/x SINE Alu -22 288 120 398 20 20 0 chr21 12344735 12344786 -22562784 + (GA)n Simple_repeat Simple_repeat 1 52 0 4463 205 20 18 chr21 12344897 12345457 -22562113 + L1MA4 LINE L1 4446 5004 -1296 2458 40 0 17 chr21 12345457 12345757 -22561813 + AluY SINE Alu 1 295 -16 4463 205 20 18 chr21 12345757 12347033 -22560537 + L1MA4 LINE L1 5004 6285 -15 399 282 124 69 chr21 12347165 12347583 -22559987 + L1MDa LINE L1 1356 1796 -4744 23 86 0 0 chr21 12349358 12349416 -22558154 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr21 12350089 12350110 -22557460 + AT_rich Low_complexity Low_complexity 1 21 0 411 92 0 0 chr21 12350206 12350271 -22557299 + (TG)n Simple_repeat Simple_repeat 2 66 0 281 263 119 8 chr21 12350293 12350411 -22557159 - L2 LINE L2 -191 3122 2992 251 348 28 28 chr21 12350449 12350590 -22556980 - L2 LINE L2 -426 2888 2748 1373 79 0 0 chr21 12352548 12352726 -22554844 - AluY SINE Alu -3 308 131 21 71 0 0 chr21 12352788 12352830 -22554740 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr21 12353651 12353696 -22553874 + AT_rich Low_complexity Low_complexity 1 45 0 1820 168 94 33 chr21 12353845 12354372 -22553198 + MLT2A2 LTR ERVL 1 554 0 2100 90 4 0 chr21 12356907 12357215 -22550355 - AluSg SINE Alu 0 309 1 2133 96 13 3 chr21 12357717 12358020 -22549550 + AluY SINE Alu 1 306 -5 22 35 0 0 chr21 12358390 12358419 -22549151 + AT_rich Low_complexity Low_complexity 1 29 0 192 40 0 0 chr21 12359726 12359751 -22547819 + (TA)n Simple_repeat Simple_repeat 2 26 0 369 0 0 0 chr21 12360580 12360621 -22546949 + (CA)n Simple_repeat Simple_repeat 2 42 0 29 47 0 0 chr21 12361481 12361524 -22546046 + AT_rich Low_complexity Low_complexity 1 43 0 201 267 107 13 chr21 12361996 12362071 -22545499 - L2 LINE L2 -54 3218 3137 1721 212 37 40 chr21 12363646 12364127 -22543443 - L1 LINE L1 -2457 3689 3210 3807 185 24 12 chr21 12364124 12364881 -22542689 + L1PA16 LINE L1 5401 6166 0 6097 168 37 8 chr21 12365250 12366447 -22541123 - Tigger3b DNA MER2_type 0 1231 1 12146 165 41 38 chr21 12368840 12370918 -22536652 + Tigger1 DNA MER2_type 14 2083 -335 879 186 0 13 chr21 12370918 12371074 -22536496 + FRAM SINE Alu 2 155 -11 4876 139 44 15 chr21 12371084 12371547 -22536023 + L1PA16 LINE L1 5024 5472 -694 2420 87 0 0 chr21 12371547 12371858 -22535712 + AluY SINE Alu 1 311 0 4876 139 44 15 chr21 12371858 12372510 -22535060 + L1PA16 LINE L1 5472 6166 0 12146 165 41 38 chr21 12372510 12372816 -22534754 + Tigger1 DNA MER2_type 2091 2418 0 225 295 90 0 chr21 12372940 12373018 -22534552 + L2 LINE L2 3229 3313 0 765 276 14 19 chr21 12373194 12373408 -22534162 - MER20 DNA MER1_type 0 219 7 245 378 79 8 chr21 12373862 12373930 -22533640 + L2 LINE L2 3137 3199 -73 201 39 0 0 chr21 12373930 12373956 -22533614 + (TTG)n Simple_repeat Simple_repeat 2 27 0 245 378 79 8 chr21 12373956 12374014 -22533556 + L2 LINE L2 3199 3272 0 21 57 0 0 chr21 12374290 12374325 -22533245 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 12374730 12374758 -22532812 + AT_rich Low_complexity Low_complexity 1 28 0 30 93 0 0 chr21 12375295 12375381 -22532189 + AT_rich Low_complexity Low_complexity 1 86 0 30 0 0 0 chr21 12377059 12377089 -22530481 + AT_rich Low_complexity Low_complexity 1 30 0 927 98 0 15 chr21 12378692 12378825 -22528745 - AluSg SINE Alu -179 131 1 23 0 0 0 chr21 12378827 12378850 -22528720 + AT_rich Low_complexity Low_complexity 1 23 0 2453 147 54 2 chr21 12378850 12379313 -22528257 - L1MA6 LINE L1 -23 6277 5791 329 225 56 22 chr21 12379917 12380006 -22527564 - MER5A DNA MER1_type -90 99 8 324 0 0 0 chr21 12380733 12380769 -22526801 + (TG)n Simple_repeat Simple_repeat 2 37 0 333 131 0 0 chr21 12380818 12380879 -22526691 + (TA)n Simple_repeat Simple_repeat 1 61 0 1659 225 64 47 chr21 12382359 12382423 -22525147 - L1MB2 LINE L1 -7 6176 6115 1565 187 7 31 chr21 12382423 12382548 -22525022 + AluJo SINE Alu 1 127 -185 2088 130 0 0 chr21 12382548 12382841 -22524729 - AluSc SINE Alu -16 293 1 1565 187 7 31 chr21 12382841 12383009 -22524561 + AluJo SINE Alu 127 287 -25 1659 225 64 47 chr21 12383009 12383415 -22524155 - L1MB2 LINE L1 -68 6115 5698 892 177 0 0 chr21 12383854 12383995 -22523575 + MLT1A1 LTR MaLR 225 365 0 277 333 132 9 chr21 12384420 12384534 -22523036 + L2 LINE L2 3184 3311 -2 26 82 0 0 chr21 12385465 12385526 -22522044 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr21 12385961 12385991 -22521579 + AT_rich Low_complexity Low_complexity 1 30 0 644 238 29 0 chr21 12386362 12386534 -22521036 + L1M4 LINE L1 4808 4984 -1162 231 133 0 0 chr21 12386590 12386635 -22520935 + (TC)n Simple_repeat Simple_repeat 2 46 0 318 271 0 0 chr21 12387418 12387503 -22520067 + L1M4 LINE L1 4899 4983 -1163 260 246 0 0 chr21 12387540 12387609 -22519961 + CT-rich Low_complexity Low_complexity 2 70 0 222 37 0 0 chr21 12388958 12388985 -22518585 + (TG)n Simple_repeat Simple_repeat 2 28 0 855 214 60 19 chr21 12390092 12390307 -22517263 - MER34 LTR ERV1 -1 541 318 707 251 21 5 chr21 12390392 12390579 -22516991 - MER34 LTR ERV1 -352 190 1 34 24 0 0 chr21 12390579 12390620 -22516950 + AT_rich Low_complexity Low_complexity 1 41 0 203 169 34 17 chr21 12391099 12391158 -22516412 + (TA)n Simple_repeat Simple_repeat 1 60 0 2095 67 0 0 chr21 12391421 12391675 -22515895 - AluSg SINE Alu -14 296 43 1983 164 57 40 chr21 12392610 12393031 -22514539 + MSTC LTR MaLR 1 428 0 185 324 106 29 chr21 12393601 12393771 -22513799 + L2 LINE L2 2589 2771 -543 1940 144 13 0 chr21 12393954 12394252 -22513318 - AluSq SINE Alu -11 302 1 2076 108 0 0 chr21 12395216 12395495 -22512075 + AluSc SINE Alu 5 283 -26 393 150 30 0 chr21 12395495 12395595 -22511975 + (TA)n Simple_repeat Simple_repeat 2 104 0 215 225 28 14 chr21 12396454 12396525 -22511045 + (TA)n Simple_repeat Simple_repeat 1 72 0 1004 197 0 0 chr21 12396738 12396916 -22510654 + FRAM SINE Alu 1 175 -1 1646 204 3 9 chr21 12396931 12397269 -22510301 + MLT1A1 LTR MaLR 29 364 -1 5145 130 37 9 chr21 12397285 12398269 -22509301 - L1PA15 LINE L1 -9 6156 5174 2598 212 52 17 chr21 12398347 12398491 -22509079 - L1PA15 LINE L1 -1631 4515 4378 1772 118 0 8 chr21 12398491 12398745 -22508825 - AluSg SINE Alu -24 286 35 2598 212 52 17 chr21 12398745 12399252 -22508318 - L1PA15 LINE L1 -1768 4378 3841 239 318 68 0 chr21 12399482 12399570 -22508000 + MLT1H LTR MaLR 249 342 -207 527 278 26 26 chr21 12400224 12400375 -22507195 - L2 LINE L2 0 3272 3122 1664 178 30 17 chr21 12400529 12400827 -22506743 + AluJb SINE Alu 4 305 -7 2129 119 7 0 chr21 12401731 12402034 -22505536 - AluSp SINE Alu -8 305 1 21 0 0 0 chr21 12402044 12402065 -22505505 + AT_rich Low_complexity Low_complexity 1 21 0 208 233 0 0 chr21 12402707 12402750 -22504820 + CT-rich Low_complexity Low_complexity 2 44 0 287 294 119 17 chr21 12402827 12403004 -22504566 - L2 LINE L2 0 3313 3119 228 327 39 0 chr21 12403138 12403242 -22504328 - MER5A DNA MER1_type -22 167 60 183 100 0 0 chr21 12404617 12404647 -22502923 + (TA)n Simple_repeat Simple_repeat 2 31 0 617 47 0 23 chr21 12404794 12404880 -22502690 + (TAGA)n Simple_repeat Simple_repeat 2 85 0 264 77 0 0 chr21 12404964 12405003 -22502567 + (TAGA)n Simple_repeat Simple_repeat 3 41 0 807 252 60 60 chr21 12405401 12405782 -22501788 - MLT1D LTR MaLR -1 504 124 23 54 0 0 chr21 12406030 12406067 -22501503 + AT_rich Low_complexity Low_complexity 1 37 0 506 273 107 83 chr21 12406591 12406874 -22500696 + L2 LINE L2 2459 2753 -561 1496 145 109 62 chr21 12406874 12407232 -22500338 - THE1C LTR MaLR 0 375 1 506 273 107 83 chr21 12407232 12407285 -22500285 + L2 LINE L2 2753 2803 -511 2033 138 3 3 chr21 12408247 12408544 -22499026 - AluSq SINE Alu -16 297 1 24 32 0 0 chr21 12408591 12408622 -22498948 + AT_rich Low_complexity Low_complexity 1 31 0 623 205 84 32 chr21 12409639 12409858 -22497712 - MER31B LTR ERV1 -10 651 231 27 0 0 0 chr21 12409919 12409946 -22497624 + AT_rich Low_complexity Low_complexity 1 27 0 1103 23 0 0 chr21 12410821 12410950 -22496620 - L1PA5 LINE L1 -875 5271 5143 7171 31 3 0 chr21 12410950 12411818 -22495752 + L1PA5 LINE L1 5279 6151 -3 2017 52 19 71 chr21 12412426 12412734 -22494836 - L1PA7 LINE L1 0 6154 5863 2020 87 0 0 chr21 12412734 12412998 -22494572 + L1PA7 LINE L1 5601 5864 -290 30 0 0 0 chr21 12414696 12414726 -22492844 + AT_rich Low_complexity Low_complexity 1 30 0 260 0 57 0 chr21 12415032 12415067 -22492503 + (TTTTTA)n Simple_repeat Simple_repeat 6 42 0 22 70 0 0 chr21 12415415 12415458 -22492112 + AT_rich Low_complexity Low_complexity 1 43 0 188 136 136 23 chr21 12415523 12415567 -22492003 - L2 LINE L2 -74 3239 3191 1232 177 0 74 chr21 12415941 12416184 -22491386 + MER34B LTR ERV1 1 225 -340 1406 209 35 56 chr21 12416184 12416557 -22491013 + MLT1A1 LTR MaLR 1 365 0 1509 182 41 0 chr21 12416557 12416843 -22490727 + MER34B LTR ERV1 221 518 -47 419 265 0 0 chr21 12416858 12416960 -22490610 + MLT1E2 LTR MaLR 523 624 -2 1474 194 17 0 chr21 12417118 12417406 -22490164 + AluJo SINE Alu 1 293 -19 803 298 55 29 chr21 12418233 12418774 -22488796 - MLT1G1 LTR MaLR -2 588 6 330 307 15 15 chr21 12418954 12419091 -22488479 + MLT2C1 LTR ERVL 1 137 -260 372 265 44 44 chr21 12419118 12419299 -22488271 + MLT2C1 LTR ERVL 215 395 -2 2880 217 43 7 chr21 12419375 12419975 -22487595 + LTR48B LTR ERV1 1 622 -22 652 281 19 19 chr21 12419985 12420195 -22487375 + LTR48B-int LTR ERV1 1 210 -6121 661 299 28 20 chr21 12420204 12420458 -22487112 + LTR48B-int LTR ERV1 1034 1289 -5042 1307 81 0 11 chr21 12420574 12420759 -22486811 - L1PA13 LINE L1 -5 6158 5976 443 182 56 56 chr21 12420771 12420897 -22486673 + LTR48B-int LTR ERV1 1586 1711 -4620 3647 197 83 26 chr21 12420970 12421986 -22485584 + LTR48B-int LTR ERV1 4062 5135 -1196 1555 100 58 21 chr21 12421987 12422228 -22485342 - L1PA8A LINE L1 -2 6129 5880 2440 87 0 0 chr21 12422228 12422560 -22485010 + L1PA8A LINE L1 5356 5687 -444 2859 206 79 90 chr21 12422562 12423479 -22484091 + LTR48B-int LTR ERV1 5128 6033 -298 1944 72 0 0 chr21 12423479 12423716 -22483854 + AluSg/x SINE Alu 65 301 -11 2859 206 79 90 chr21 12423716 12423849 -22483721 + LTR48B-int LTR ERV1 6033 6166 -165 2898 195 55 7 chr21 12423952 12424566 -22483004 + LTR48B LTR ERV1 1 644 0 2103 139 0 7 chr21 12425901 12426211 -22481359 + AluSx SINE Alu 1 308 -4 2296 208 6 23 chr21 12426688 12427169 -22480401 + MER31A LTR ERV1 5 477 -8 183 80 0 0 chr21 12427707 12427732 -22479838 + (TC)n Simple_repeat Simple_repeat 2 26 0 1781 157 7 20 chr21 12427733 12428213 -22479357 - AluSx SINE Alu 0 476 1 34 24 0 0 chr21 12428248 12428289 -22479281 + AT_rich Low_complexity Low_complexity 1 41 0 697 133 62 8 chr21 12428968 12429096 -22478474 + MSTC LTR MaLR 1 135 -293 410 268 21 0 chr21 12429321 12429418 -22478152 - MER58A DNA MER1_type -6 101 3 25 65 0 0 chr21 12429537 12429583 -22477987 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr21 12429751 12429772 -22477798 + AT_rich Low_complexity Low_complexity 1 21 0 237 273 7 45 chr21 12430027 12430181 -22477389 + T-rich Low_complexity Low_complexity 8 155 0 1038 191 4 79 chr21 12430190 12430442 -22477128 - AluJo SINE Alu -63 249 17 22 35 0 0 chr21 12430750 12430779 -22476791 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 12430972 12431000 -22476570 + AT_rich Low_complexity Low_complexity 1 28 0 1797 157 41 59 chr21 12431110 12431498 -22476072 + MLT1B LTR MaLR 1 381 -9 1727 113 23 4 chr21 12431834 12432090 -22475480 - AluSx SINE Alu -4 308 48 2064 148 0 0 chr21 12433454 12433764 -22473806 - AluSx SINE Alu 0 312 3 880 225 22 26 chr21 12434430 12434657 -22472913 + MLT2D LTR ERVL 1 226 -188 308 266 0 43 chr21 12434675 12434769 -22472801 - L1MC4 LINE L1 -1339 6703 6614 241 242 0 53 chr21 12434799 12434894 -22472676 - L1MC4 LINE L1 -1339 6703 6614 285 208 0 0 chr21 12434895 12434967 -22472603 + (TA)n Simple_repeat Simple_repeat 1 72 0 262 156 0 0 chr21 12434967 12435012 -22472558 - Ricksha DNA DNA -1157 889 845 186 133 0 0 chr21 12435012 12435042 -22472528 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 240 71 24 0 chr21 12435042 12435074 -22472496 - MLT2B1 LTR ERVL -14 506 471 261 0 0 0 chr21 12435074 12435103 -22472467 + (CA)n Simple_repeat Simple_repeat 2 30 0 375 109 0 0 chr21 12435115 12435170 -22472400 + MLT2B1 LTR ERVL 466 520 0 197 398 45 11 chr21 12435838 12436014 -22471556 + MIR SINE MIR 80 261 -1 807 199 0 0 chr21 12437373 12437519 -22470051 + MLT1A1 LTR MaLR 1 146 -219 345 24 0 0 chr21 12437951 12437993 -22469577 + (TG)n Simple_repeat Simple_repeat 2 43 0 284 339 31 53 chr21 12438219 12438446 -22469124 - L2 LINE L2 -895 2419 2198 656 193 28 14 chr21 12438872 12439017 -22468553 + MLT1A1 LTR MaLR 1 147 -218 3402 169 98 38 chr21 12439064 12440386 -22467184 - pTR5 LTR ERV1 -143 2295 279 592 246 16 77 chr21 12440402 12440519 -22467051 + MLT1A1 LTR MaLR 225 329 -67 1993 85 4 0 chr21 12440519 12440789 -22466781 - AluY SINE Alu -2 309 39 592 246 16 77 chr21 12440789 12440854 -22466716 + MLT1A1 LTR MaLR 329 396 0 191 388 63 10 chr21 12441003 12441209 -22466361 - L2 LINE L2 -1838 1476 1260 5532 192 16 5 chr21 12442618 12443931 -22463639 + L1MC1 LINE L1 5005 6329 -4 4603 79 0 11 chr21 12443931 12444555 -22463015 + L1PA7 LINE L1 5527 6149 -5 501 229 24 0 chr21 12445740 12445906 -22461664 + GA-rich Low_complexity Low_complexity 3 172 0 310 268 43 72 chr21 12448376 12448514 -22459056 - L2 LINE L2 -1 3312 3179 1642 109 0 0 chr21 12449239 12449460 -22458110 + AluSx SINE Alu 5 225 -87 754 114 9 0 chr21 12449460 12449574 -22457996 + AluSp/q SINE Alu 191 305 -8 298 179 40 13 chr21 12449614 12449765 -22457805 + (TA)n Simple_repeat Simple_repeat 2 156 0 731 214 7 0 chr21 12450259 12450404 -22457166 + AluJb SINE Alu 137 282 -30 25 0 0 0 chr21 12450941 12450966 -22456604 + AT_rich Low_complexity Low_complexity 1 25 0 228 191 36 0 chr21 12451368 12451452 -22456118 + (TA)n Simple_repeat Simple_repeat 1 87 0 204 227 23 0 chr21 12453923 12453967 -22453603 + GA-rich Low_complexity Low_complexity 1 45 0 363 56 0 19 chr21 12455552 12455606 -22451964 - MADE1 DNA Mariner 0 80 28 4286 180 40 34 chr21 12456910 12457900 -22449670 - L1MA9 LINE L1 0 6312 5317 843 204 13 4 chr21 12457906 12458126 -22449444 - L1MA6 LINE L1 -107 6193 5966 4933 212 39 9 chr21 12458293 12459727 -22447843 - L1MA9 LINE L1 -886 5260 3743 682 221 54 51 chr21 12459821 12460159 -22447411 - MER61D LTR ERV1 -11 749 333 772 233 47 6 chr21 12460140 12460312 -22447258 - LTR28 LTR ERV1 -841 179 1 1473 204 49 41 chr21 12460312 12460798 -22446772 - L1MA9 LINE L1 -2401 3745 3256 958 244 32 13 chr21 12460776 12461087 -22446483 - L1MA9 LINE L1 -3097 3049 2733 28 48 0 0 chr21 12461555 12461597 -22445973 + AT_rich Low_complexity Low_complexity 1 42 0 190 366 42 21 chr21 12462311 12462453 -22445117 + L3 LINE CR1 1153 1297 -280 4777 244 27 43 chr21 12462692 12463861 -22443709 - L1MC3 LINE L1 -743 5821 6024 1281 246 40 55 chr21 12463861 12464263 -22443307 - MSTD LTR MaLR 0 396 1 4777 244 27 43 chr21 12464263 12465104 -22442466 - L1MC3 LINE L1 -539 6025 5173 579 302 34 8 chr21 12465100 12465368 -22442202 - L1MC3 LINE L1 -3666 2898 2624 24 0 0 0 chr21 12465374 12465398 -22442172 + AT_rich Low_complexity Low_complexity 1 24 0 798 203 102 35 chr21 12465431 12466022 -22441548 - L1MC3 LINE L1 -4024 2540 1867 1496 232 114 20 chr21 12466090 12466651 -22440919 - L1MC3 LINE L1 -4926 1638 1025 281 87 0 22 chr21 12466677 12466723 -22440847 + (TA)n Simple_repeat Simple_repeat 2 46 0 994 275 68 7 chr21 12466724 12467250 -22440320 - L1MC3 LINE L1 -5097 948 349 23 0 0 0 chr21 12467321 12467344 -22440226 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 12468092 12468116 -22439454 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr21 12468315 12468336 -22439234 + AT_rich Low_complexity Low_complexity 1 21 0 1165 74 0 0 chr21 12468775 12468924 -22438646 - AluY SINE Alu -13 298 150 2486 121 3 3 chr21 12469277 12469646 -22437924 - L1PA13 LINE L1 -387 5776 5405 2411 120 13 5 chr21 12469646 12470016 -22437554 + L1PA13 LINE L1 5787 6163 0 2486 121 3 3 chr21 12470016 12470027 -22437543 - L1P4 LINE L1 -757 5406 5396 614 308 14 58 chr21 12470028 12470304 -22437266 + L2 LINE L2 815 1078 -2236 200 333 0 17 chr21 12472466 12472526 -22435044 - L2 LINE L2 -359 2955 2897 264 313 132 33 chr21 12472604 12472786 -22434784 - L2 LINE L2 -1174 2140 1941 24 0 0 0 chr21 12473628 12473652 -22433918 + AT_rich Low_complexity Low_complexity 1 24 0 1052 125 16 93 chr21 12474613 12474861 -22432709 - L1MA9 LINE L1 0 6312 6084 23 54 0 0 chr21 12475206 12475243 -22432327 + AT_rich Low_complexity Low_complexity 1 37 0 1833 145 7 0 chr21 12475715 12475998 -22431572 + AluSx SINE Alu 1 285 -27 704 161 23 0 chr21 12476027 12476157 -22431413 - AluJb SINE Alu -179 133 1 2024 126 3 0 chr21 12476860 12477170 -22430400 - AluSx SINE Alu -1 311 1 421 331 72 8 chr21 12477187 12477562 -22430008 - L1MEd LINE L1 -5233 886 488 2291 62 0 10 chr21 12477619 12477910 -22429660 - AluY SINE Alu -15 296 9 2449 179 72 32 chr21 12478093 12478686 -22428884 + L1MB8 LINE L1 5561 6177 -1 328 103 15 15 chr21 12478835 12478903 -22428667 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 2414 57 10 0 chr21 12479252 12479552 -22428018 + AluY SINE Alu 1 303 -8 23 33 0 0 chr21 12479898 12479928 -22427642 + AT_rich Low_complexity Low_complexity 1 30 0 429 36 0 0 chr21 12481374 12481429 -22426141 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 71 0 0 chr21 12482210 12482252 -22425318 + AT_rich Low_complexity Low_complexity 1 42 0 1401 178 79 0 chr21 12482443 12482747 -22424823 - L1MA3 LINE L1 0 6305 5978 3234 143 115 22 chr21 12482740 12482968 -22424602 + L1MA3 LINE L1 5181 5386 -919 2396 66 0 17 chr21 12482968 12483270 -22424300 + AluY SINE Alu 1 297 -14 3234 143 115 22 chr21 12483270 12483750 -22423820 + L1MA3 LINE L1 5386 5954 -351 577 148 61 0 chr21 12483809 12483924 -22423646 - L1MA6 LINE L1 -17 6283 6162 2264 95 0 10 chr21 12483955 12484261 -22423309 + AluY SINE Alu 1 303 -8 25 51 0 0 chr21 12484316 12484355 -22423215 + AT_rich Low_complexity Low_complexity 1 39 0 2316 207 15 22 chr21 12485742 12486336 -22421234 + L1 LINE L1 4128 4717 -1429 3493 171 11 33 chr21 12486316 12486942 -22420628 + L1PA7 LINE L1 4492 5130 -1021 1929 163 0 3 chr21 12486942 12487242 -22420328 + AluSx SINE Alu 1 299 -13 3493 171 11 33 chr21 12487242 12487468 -22420102 + L1PA7 LINE L1 5130 5359 -792 6307 73 12 31 chr21 12487468 12488677 -22418893 + L1PA7 LINE L1 4955 6149 -5 3493 171 11 33 chr21 12488677 12489140 -22418430 + L1PA7 LINE L1 5359 5785 -366 270 0 0 0 chr21 12489141 12489171 -22418399 + (TG)n Simple_repeat Simple_repeat 2 31 0 2570 157 15 0 chr21 12489529 12489995 -22417575 - L1MA5A LINE L1 -6 6291 5819 23 0 0 0 chr21 12489995 12490018 -22417552 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr21 12490098 12490140 -22417430 + AT_rich Low_complexity Low_complexity 1 42 0 355 299 52 15 chr21 12490177 12490311 -22417259 - L1ME2 LINE L1 -13 6151 6013 627 278 81 3 chr21 12490367 12490960 -22416610 - L1ME2 LINE L1 -217 5947 5297 262 236 65 0 chr21 12491029 12491152 -22416418 - L1ME2 LINE L1 -872 5274 5144 444 221 23 15 chr21 12491643 12491774 -22415796 - L1ME2 LINE L1 -1494 4652 4521 5428 135 38 2 chr21 12491811 12492964 -22414606 - L1PA14 LINE L1 -3 6158 4964 408 130 0 0 chr21 12493024 12493093 -22414477 - L1PA14 LINE L1 -3721 2425 2357 207 0 0 0 chr21 12493527 12493550 -22414020 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 330 263 0 0 chr21 12495012 12495088 -22412482 - MER3 DNA MER1_type -125 84 9 1788 163 0 0 chr21 12495700 12495982 -22411588 - AluSx SINE Alu -21 291 10 24 32 0 0 chr21 12496077 12496108 -22411462 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr21 12496344 12496368 -22411202 + AT_rich Low_complexity Low_complexity 1 24 0 35 78 0 0 chr21 12497624 12497701 -22409869 + AT_rich Low_complexity Low_complexity 1 77 0 216 121 0 52 chr21 12497728 12497786 -22409784 + (TATAA)n Simple_repeat Simple_repeat 5 59 0 2357 83 3 0 chr21 12497964 12498266 -22409304 + AluSp SINE Alu 1 303 -10 3179 158 15 15 chr21 12498362 12498946 -22408624 - L1MC1 LINE L1 -10 6323 5740 222 118 0 0 chr21 12499083 12499117 -22408453 + (TG)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr21 12499898 12499926 -22407644 + AT_rich Low_complexity Low_complexity 1 28 0 1325 298 70 28 chr21 12501826 12502588 -22404982 + L2 LINE L2 2348 3148 -165 354 129 35 0 chr21 12502625 12502710 -22404860 + (TAGA)n Simple_repeat Simple_repeat 2 89 0 1269 202 56 65 chr21 12502736 12503077 -22404493 - MLT2C1 LTR ERVL -56 341 4 408 253 70 70 chr21 12503079 12503237 -22404333 + L2 LINE L2 3146 3303 -10 1129 214 111 140 chr21 12503656 12504320 -22403250 + MER61E LTR ERV1 92 779 0 2415 74 0 0 chr21 12504494 12504792 -22402778 + AluSg SINE Alu 1 298 -12 23 68 0 0 chr21 12504882 12504926 -22402644 + AT_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr21 12505783 12505804 -22401766 + (TC)n Simple_repeat Simple_repeat 2 22 0 1544 193 0 46 chr21 12505807 12506134 -22401436 - AluJb SINE Alu 0 312 1 247 236 83 0 chr21 12508295 12508367 -22399203 - MER5B DNA MER1_type -74 104 27 467 161 24 8 chr21 12508447 12508571 -22398999 + CT-rich Low_complexity Low_complexity 4 129 0 24 67 0 0 chr21 12509020 12509065 -22398505 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr21 12509253 12509284 -22398286 + AT_rich Low_complexity Low_complexity 1 31 0 2860 111 37 0 chr21 12510683 12511115 -22396455 - L1PA11 LINE L1 -1 6173 5726 258 81 0 0 chr21 12511845 12511882 -22395688 + (TA)n Simple_repeat Simple_repeat 2 38 0 2307 81 0 7 chr21 12512423 12512721 -22394849 + AluY SINE Alu 1 296 -15 1023 322 119 4 chr21 12513018 12513524 -22394046 + L2 LINE L2 2267 2830 -484 39 22 0 0 chr21 12513662 12513708 -22393862 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr21 12513823 12513844 -22393726 + AT_rich Low_complexity Low_complexity 1 21 0 602 280 0 7 chr21 12513863 12514006 -22393564 - MER63B DNA MER1_type -257 179 38 33 25 0 0 chr21 12514250 12514290 -22393280 + AT_rich Low_complexity Low_complexity 1 40 0 22 70 0 0 chr21 12514554 12514597 -22392973 + AT_rich Low_complexity Low_complexity 1 43 0 356 294 61 56 chr21 12514738 12514952 -22392618 + L1M4 LINE L1 3115 3329 -2817 1769 156 57 33 chr21 12515087 12515453 -22392117 + THE1C LTR MaLR 1 375 0 1593 220 22 30 chr21 12515729 12516043 -22391527 - MER89 LTR ERV1 0 559 150 2081 134 0 0 chr21 12516043 12516349 -22391221 + AluSp SINE Alu 1 306 -7 1593 220 22 30 chr21 12516349 12516470 -22391100 - MER89 LTR ERV1 -409 150 29 34 65 0 0 chr21 12516498 12516560 -22391010 + AT_rich Low_complexity Low_complexity 1 62 0 473 227 0 0 chr21 12516565 12516662 -22390908 - FLAM_C SINE Alu -40 103 7 429 217 28 19 chr21 12516806 12516912 -22390658 + LTR37A LTR ERV1 1 107 -319 385 134 73 49 chr21 12516908 12516990 -22390580 + LTR37A LTR ERV1 29 112 -314 550 176 38 38 chr21 12516988 12517147 -22390423 + LTR37A LTR ERV1 268 426 0 1335 256 32 5 chr21 12517947 12518264 -22389306 - MLT1A1 LTR MaLR -2 363 37 1060 149 0 0 chr21 12518265 12518446 -22389124 - L1MA3 LINE L1 0 6305 6125 384 152 38 0 chr21 12518446 12518525 -22389045 + L1MA3 LINE L1 6045 6126 -179 3136 29 0 3 chr21 12518513 12518897 -22388673 - L1P LINE L1 -2129 4017 3635 234 0 0 0 chr21 12518905 12518931 -22388639 + (TAA)n Simple_repeat Simple_repeat 3 28 0 1501 221 16 32 chr21 12519897 12520273 -22387297 - MLT1A2 LTR MaLR -4 370 1 33 25 0 0 chr21 12521167 12521207 -22386363 + AT_rich Low_complexity Low_complexity 1 40 0 321 189 38 57 chr21 12521543 12521649 -22385921 - LTR52 LTR ERVL -307 114 11 1170 199 63 35 chr21 12521651 12521937 -22385633 - L1PA16 LINE L1 -4 6162 5869 494 303 102 62 chr21 12521937 12522455 -22385115 + L1ME4a LINE L1 5563 6101 -20 22 0 0 0 chr21 12522467 12522489 -22385081 + AT_rich Low_complexity Low_complexity 1 22 0 374 312 0 0 chr21 12523417 12523513 -22384057 - L2 LINE L2 -1 3312 3217 243 243 14 40 chr21 12524115 12524189 -22383381 + Charlie8 DNA MER1_type 107 178 -2239 248 130 43 29 chr21 12524456 12524525 -22383045 + (TA)n Simple_repeat Simple_repeat 1 70 0 339 310 79 32 chr21 12524646 12524862 -22382708 - L2 LINE L2 -74 3239 3014 1142 231 74 38 chr21 12524864 12525425 -22382145 + LTR68 LTR ERV1 1 613 -127 2200 176 15 95 chr21 12525589 12525645 -22381925 - MER66-int LTR ERV1 -4187 2489 2430 2204 153 55 5 chr21 12525645 12526049 -22381521 - MSTA LTR MaLR 0 428 5 2200 176 15 95 chr21 12526049 12526189 -22381381 - MER66-int LTR ERV1 -4246 2430 2280 2130 105 7 7 chr21 12526189 12526485 -22381085 + AluSc SINE Alu 1 296 -13 2200 176 15 95 chr21 12526485 12526815 -22380755 - MER66-int LTR ERV1 -4396 2280 2004 1185 235 40 23 chr21 12526842 12527207 -22380363 - MER66A LTR ERV1 -19 459 169 2001 135 26 7 chr21 12527297 12527601 -22379969 - AluSx SINE Alu -2 310 1 326 197 26 0 chr21 12527654 12527730 -22379840 + MER67D LTR ERV1 432 509 -5 1380 61 0 6 chr21 12528148 12528329 -22379241 - L1PA7 LINE L1 0 6154 5975 21 0 0 0 chr21 12528995 12529016 -22378554 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 12529495 12529528 -22378042 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chr21 12530324 12530367 -22377203 + AT_rich Low_complexity Low_complexity 1 43 0 207 196 72 0 chr21 12530609 12530706 -22376864 + (TA)n Simple_repeat Simple_repeat 2 105 0 277 280 93 0 chr21 12532434 12532584 -22374986 - L1ME3A LINE L1 -214 5956 5793 339 292 112 25 chr21 12532742 12532982 -22374588 - L1ME3A LINE L1 -780 5553 5293 2493 240 53 10 chr21 12533178 12533802 -22373768 - MER82 DNA MER2_type -1 652 2 351 44 0 0 chr21 12533836 12533881 -22373689 + (TG)n Simple_repeat Simple_repeat 2 46 0 38 39 0 0 chr21 12535442 12535494 -22372076 + AT_rich Low_complexity Low_complexity 1 52 0 1835 194 8 11 chr21 12535662 12536028 -22371542 - MLT1A1 LTR MaLR 0 365 1 571 182 0 0 chr21 12536850 12536949 -22370621 - MLT1A1 LTR MaLR 0 365 267 21 0 0 0 chr21 12537684 12537705 -22369865 + AT_rich Low_complexity Low_complexity 1 21 0 289 154 13 13 chr21 12538499 12538577 -22368993 + GA-rich Low_complexity Low_complexity 1 78 0 240 35 0 0 chr21 12538700 12538729 -22368841 + (T)n Simple_repeat Simple_repeat 1 29 0 1985 206 19 21 chr21 12538900 12539333 -22368237 - MSTB1 LTR MaLR 0 432 1 6976 229 47 4 chr21 12539334 12540917 -22366653 - MSTB1-int LTR MaLR 0 1651 1 2225 177 24 5 chr21 12540917 12541341 -22366229 - MSTB1 LTR MaLR 0 432 1 1394 62 0 20 chr21 12541366 12541561 -22366009 - AluY SINE Alu -11 300 110 919 62 0 0 chr21 12541571 12541683 -22365887 - AluY SINE Alu -179 132 21 21 36 0 0 chr21 12542481 12542509 -22365061 + AT_rich Low_complexity Low_complexity 1 28 0 1614 192 3 23 chr21 12543203 12543511 -22364059 + AluJo SINE Alu 1 302 -10 22 0 0 0 chr21 12544134 12544156 -22363414 + AT_rich Low_complexity Low_complexity 1 22 0 3621 215 30 31 chr21 12544498 12545330 -22362240 + L1MC2 LINE L1 4143 4975 -1358 324 0 0 0 chr21 12545330 12545366 -22362204 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3621 215 30 31 chr21 12545366 12546224 -22361346 + L1MC2 LINE L1 4975 5831 -502 2324 80 0 7 chr21 12546224 12546525 -22361045 + AluY SINE Alu 1 299 -12 657 203 51 11 chr21 12546551 12546728 -22360842 + L1MC2 LINE L1 6146 6329 -15 204 179 0 0 chr21 12546740 12546779 -22360791 + A-rich Low_complexity Low_complexity 1 39 0 843 84 0 8 chr21 12547258 12547377 -22360193 - AluSp/q SINE Alu -8 305 188 216 0 0 0 chr21 12547470 12547494 -22360076 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 277 349 0 0 chr21 12547556 12547642 -22359928 + L1MCc LINE L1 824 909 -5514 1832 234 29 11 chr21 12548365 12548809 -22358761 - MER66A LTR ERV1 0 478 27 23 33 0 0 chr21 12548915 12548945 -22358625 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr21 12549190 12549224 -22358346 + AT_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr21 12549889 12549918 -22357652 + AT_rich Low_complexity Low_complexity 1 29 0 1454 208 48 22 chr21 12550059 12550415 -22357155 + MLT1A1 LTR MaLR 1 365 0 24 32 0 0 chr21 12550624 12550655 -22356915 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 12551586 12551609 -22355961 + AT_rich Low_complexity Low_complexity 1 23 0 737 276 31 31 chr21 12551721 12551978 -22355592 + MLT1A2 LTR MaLR 108 364 -10 21 36 0 0 chr21 12552720 12552748 -22354822 + AT_rich Low_complexity Low_complexity 1 28 0 726 171 89 13 chr21 12553670 12553828 -22353742 - MER20 DNA MER1_type -4 215 46 228 122 0 0 chr21 12554414 12554455 -22353115 + (CA)n Simple_repeat Simple_repeat 1 41 0 647 328 73 16 chr21 12555408 12555655 -22351915 - LTR16C LTR ERVL -60 431 171 517 325 20 20 chr21 12556023 12556223 -22351347 - HERVL LTR ERVL -1346 4308 4109 501 231 60 0 chr21 12556242 12556376 -22351194 - L1MCa LINE L1 -4593 1833 1692 306 0 0 0 chr21 12556396 12556430 -22351140 + (TA)n Simple_repeat Simple_repeat 2 35 0 2128 125 3 3 chr21 12556430 12556734 -22350836 - AluSg SINE Alu -6 304 1 1640 178 0 0 chr21 12556735 12557011 -22350559 + Tigger3(Golem) DNA MER2_type 2763 3038 0 22 56 0 0 chr21 12557148 12557184 -22350386 + AT_rich Low_complexity Low_complexity 1 36 0 213 121 0 0 chr21 12557899 12557932 -22349638 + (CA)n Simple_repeat Simple_repeat 1 33 0 3888 152 25 6 chr21 12558236 12558953 -22348617 - L1MA4 LINE L1 -6 6294 5564 390 239 92 28 chr21 12558986 12559095 -22348475 + FLAM_A SINE Alu 1 116 -17 7229 35 9 0 chr21 12559123 12560283 -22347287 - L1PA5 LINE L1 -4 6150 4980 1698 94 0 55 chr21 12562944 12563198 -22344372 + AluSg SINE Alu 50 289 -21 2195 96 0 20 chr21 12564645 12564946 -22342624 + AluY SINE Alu 1 295 -16 193 209 30 0 chr21 12565621 12565688 -22341882 + GA-rich Low_complexity Low_complexity 1 69 0 2166 99 3 0 chr21 12566043 12566327 -22341243 + AluSg SINE Alu 3 287 -23 393 288 36 14 chr21 12566428 12566567 -22341003 - L2 LINE L2 -279 3034 2893 6101 31 6 0 chr21 12566681 12567413 -22340157 - L1PA4 LINE L1 -1 6154 5419 870 273 43 67 chr21 12567430 12567848 -22339722 + LTR52 LTR ERVL 13 420 -1 2434 240 37 34 chr21 12567848 12567952 -22339618 + LTR52-int LTR ERVL 3 105 -3451 2119 121 0 0 chr21 12567952 12568249 -22339321 - AluSx SINE Alu -12 300 4 2434 240 37 34 chr21 12568249 12568499 -22339071 + LTR52-int LTR ERVL 105 353 -3203 1731 213 6 8 chr21 12568499 12568865 -22338705 - MLT1A1 LTR MaLR 0 365 1 2434 240 37 34 chr21 12568865 12569179 -22338391 + LTR52-int LTR ERVL 353 674 -2882 1883 206 47 66 chr21 12569187 12569822 -22337748 + LTR52-int LTR ERVL 792 1414 -2142 2590 249 60 21 chr21 12569868 12570677 -22336893 + LTR52-int LTR ERVL 1481 3474 -82 969 259 42 24 chr21 12570708 12570997 -22336573 + LTR52 LTR ERVL 49 342 -79 24 67 0 0 chr21 12570997 12571042 -22336528 + AT_rich Low_complexity Low_complexity 1 45 0 264 305 45 32 chr21 12571677 12571831 -22335739 + MIR SINE MIR 99 254 -8 1111 134 5 30 chr21 12572563 12572764 -22334806 + L1PA14 LINE L1 5965 6160 -1 1545 189 33 13 chr21 12572924 12573225 -22334345 - MER1B DNA MER1_type 0 339 33 372 72 43 0 chr21 12573434 12573503 -22334067 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 309 89 0 0 chr21 12575146 12575191 -22332379 + (TG)n Simple_repeat Simple_repeat 2 46 0 10779 218 37 31 chr21 12575191 12578430 -22329140 - L1MB1 LINE L1 -33 7575 4319 1714 107 0 93 chr21 12578430 12578730 -22328840 - AluY SINE Alu -39 272 1 10779 218 37 31 chr21 12578730 12579490 -22328080 - L1MB1 LINE L1 -3289 4319 3565 3171 136 24 10 chr21 12579490 12579728 -22327842 + MER75 DNA T2_type 1 234 -280 2276 151 5 27 chr21 12579728 12580103 -22327467 - MER57A LTR ERV1 0 403 36 1937 112 42 0 chr21 12580103 12580389 -22327181 + AluY SINE Alu 1 298 -13 2276 151 5 27 chr21 12580389 12580425 -22327145 - MER57A LTR ERV1 -367 36 1 3171 136 24 10 chr21 12580425 12580693 -22326877 + MER75 DNA T2_type 234 514 0 387 201 60 20 chr21 12580702 12580851 -22326719 - L1MB1 LINE L1 -4013 3552 3398 197 347 0 14 chr21 12581044 12581116 -22326454 - MIR SINE MIR -124 138 68 2376 216 45 6 chr21 12581206 12581734 -22325836 - MER44D DNA MER2_type 0 605 2 1676 178 40 11 chr21 12582587 12582936 -22324634 - THE1C LTR MaLR 0 375 17 26 50 0 0 chr21 12583018 12583058 -22324512 + AT_rich Low_complexity Low_complexity 1 40 0 32 94 0 20 chr21 12583355 12583504 -22324066 + AT_rich Low_complexity Low_complexity 1 146 0 3236 158 28 30 chr21 12583518 12584124 -22323446 - MER6A DNA MER2_type 0 605 1 22 0 0 0 chr21 12584160 12584182 -22323388 + AT_rich Low_complexity Low_complexity 1 22 0 323 233 44 33 chr21 12584367 12584457 -22323113 + L2 LINE L2 3223 3313 0 1948 150 0 0 chr21 12584743 12585049 -22322521 + AluJb SINE Alu 5 310 -2 32 0 0 0 chr21 12585898 12585930 -22321640 + AT_rich Low_complexity Low_complexity 1 32 0 5473 123 21 13 chr21 12587108 12588735 -22318835 - L1PA14 LINE L1 0 6161 4501 934 213 25 0 chr21 12588777 12588974 -22318596 - L1MC1 LINE L1 -25 6308 6107 306 216 0 0 chr21 12588976 12589050 -22318520 + (TATATG)n Simple_repeat Simple_repeat 1 74 0 353 297 20 34 chr21 12589574 12589722 -22317848 + MIR SINE MIR 51 196 -66 22 0 0 0 chr21 12590630 12590652 -22316918 + AT_rich Low_complexity Low_complexity 1 22 0 33 66 0 0 chr21 12591614 12591675 -22315895 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr21 12591881 12591912 -22315658 + AT_rich Low_complexity Low_complexity 1 31 0 4916 143 6 40 chr21 12592100 12592964 -22314606 - L1PA15 LINE L1 -21 6144 5311 26 0 0 0 chr21 12593566 12593592 -22313978 + AT_rich Low_complexity Low_complexity 1 26 0 370 260 81 70 chr21 12594174 12594432 -22313138 - L2 LINE L2 -58 3255 2995 195 325 8 40 chr21 12594399 12594525 -22313045 - L2 LINE L2 -453 2861 2740 2018 140 0 3 chr21 12594684 12594984 -22312586 - AluSx SINE Alu -11 301 3 506 243 106 27 chr21 12595217 12595527 -22312043 - L1ME3 LINE L1 -2 6160 5823 204 125 0 0 chr21 12595808 12595840 -22311730 + (TATG)n Simple_repeat Simple_repeat 3 34 0 22 35 0 0 chr21 12596352 12596381 -22311189 + AT_rich Low_complexity Low_complexity 1 29 0 216 200 0 0 chr21 12596708 12596748 -22310822 + (TAGA)n Simple_repeat Simple_repeat 1 40 0 2437 66 0 25 chr21 12597977 12598296 -22309274 + AluY SINE Alu 1 311 0 21 36 0 0 chr21 12598651 12598679 -22308891 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr21 12599500 12599552 -22308018 + AT_rich Low_complexity Low_complexity 1 52 0 37 52 0 0 chr21 12599598 12599656 -22307914 + AT_rich Low_complexity Low_complexity 1 58 0 694 212 0 0 chr21 12599708 12599845 -22307725 - MSTC LTR MaLR 0 428 292 3052 105 26 0 chr21 12601274 12601703 -22305867 + MLT2A2 LTR ERVL 1 440 -13 1732 200 0 0 chr21 12602352 12602647 -22304923 + AluJo SINE Alu 7 301 -11 2979 204 48 26 chr21 12603399 12604103 -22303467 + L1MB1 LINE L1 5424 6143 -25 1309 212 16 58 chr21 12604109 12604420 -22303150 - AluJo SINE Alu -14 298 1 8762 155 10 28 chr21 12604605 12607021 -22300549 - L1PBa LINE L1 -3535 3327 620 988 185 26 0 chr21 12607000 12607195 -22300375 - L1PBa LINE L1 -6663 200 1 32 67 0 0 chr21 12607887 12607947 -22299623 + AT_rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chr21 12608641 12608669 -22298901 + AT_rich Low_complexity Low_complexity 1 28 0 2004 219 75 27 chr21 12609117 12609819 -22297751 + L1MB3 LINE L1 5395 6156 -27 2092 81 4 4 chr21 12610011 12610283 -22297287 + AluSc SINE Alu 1 272 -37 2233 64 10 30 chr21 12610285 12610580 -22296990 + AluSp SINE Alu 13 301 -12 207 0 0 0 chr21 12610823 12610846 -22296724 + (TTA)n Simple_repeat Simple_repeat 2 24 0 6749 66 0 9 chr21 12610847 12611741 -22295829 - L1PA8 LINE L1 -17 6155 5270 459 280 64 19 chr21 12611724 12612085 -22295485 - L1MEc LINE L1 -2877 3338 2962 490 213 153 15 chr21 12612153 12612355 -22295215 - L1MEc LINE L1 -3376 2839 2610 527 299 24 24 chr21 12612446 12612737 -22294833 - L1MEc LINE L1 -3726 2489 2199 484 266 106 10 chr21 12612742 12612949 -22294621 - L1MEc LINE L1 -4163 2233 2007 1894 161 3 0 chr21 12613480 12613791 -22293779 + AluSq SINE Alu 1 312 -1 45 34 0 0 chr21 12614008 12614067 -22293503 + AT_rich Low_complexity Low_complexity 1 59 0 2631 107 0 3 chr21 12614139 12614504 -22293066 - THE1B LTR MaLR 0 364 1 780 119 0 0 chr21 12614504 12614622 -22292948 - THE1B-int LTR MaLR 0 1580 1463 503 136 9 0 chr21 12614693 12614719 -22292851 + (TA)n Simple_repeat Simple_repeat 1 108 0 308 247 0 25 chr21 12614719 12614800 -22292770 - L1MC4 LINE L1 -1324 6718 6640 23 54 0 0 chr21 12614930 12614967 -22292603 + AT_rich Low_complexity Low_complexity 1 37 0 274 279 35 12 chr21 12614979 12615065 -22292505 - HAL1 LINE L1 -917 1590 1503 1196 237 33 19 chr21 12615145 12615504 -22292066 - MLT1A1 LTR MaLR -1 364 1 1742 240 62 32 chr21 12615923 12616401 -22291169 + MLT2B1 LTR ERVL 1 427 -26 2681 226 46 8 chr21 12616423 12617052 -22290518 + MLT-int LTR MaLR 5 657 -1078 1579 144 63 18 chr21 12617288 12617572 -22289998 - MSTA LTR MaLR -131 297 1 270 321 102 33 chr21 12618006 12618221 -22289349 - MLT1H LTR MaLR -276 319 89 811 130 0 0 chr21 12618267 12618398 -22289172 - L1PA13 LINE L1 -1 6162 6032 366 23 0 0 chr21 12618613 12618656 -22288914 + (TG)n Simple_repeat Simple_repeat 2 44 0 23 86 0 0 chr21 12618685 12618743 -22288827 + AT_rich Low_complexity Low_complexity 1 58 0 727 256 66 25 chr21 12619670 12619812 -22287758 + Charlie4a DNA MER1_type 15 150 -1811 1764 191 14 17 chr21 12619812 12620174 -22287396 - MER46B DNA MER2_type 0 236 1 727 256 66 25 chr21 12620174 12620348 -22287222 + Charlie4a DNA MER1_type 150 344 -164 429 343 45 30 chr21 12620829 12621097 -22286473 + L2 LINE L2 2544 2815 -499 857 275 14 0 chr21 12621116 12621323 -22286247 - MLT1E2 LTR MaLR -99 527 318 307 216 72 10 chr21 12621509 12621606 -22285964 - MLT1E2 LTR MaLR -458 196 94 519 296 65 71 chr21 12621693 12622061 -22285509 - MLT1E3 LTR MaLR 0 624 259 217 115 82 0 chr21 12622735 12622796 -22284774 + (TA)n Simple_repeat Simple_repeat 2 67 0 25 31 0 0 chr21 12622811 12622843 -22284727 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr21 12622866 12622902 -22284668 + AT_rich Low_complexity Low_complexity 1 36 0 230 140 35 41 chr21 12622908 12623395 -22284175 + (TTATA)n Simple_repeat Simple_repeat 5 174 0 353 57 95 25 chr21 12623046 12623062 -22284508 + (TA)n Simple_repeat Simple_repeat 1 14 -155 2884 6 0 0 chr21 12623062 12623379 -22284191 - AluYb8 SINE Alu -1 317 1 353 57 95 25 chr21 12623379 12623520 -22284050 + (TA)n Simple_repeat Simple_repeat 14 169 0 25 31 0 0 chr21 12623558 12623590 -22283980 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr21 12623784 12623806 -22283764 + AT_rich Low_complexity Low_complexity 1 22 0 662 249 84 84 chr21 12624690 12625084 -22282486 - MSTD LTR MaLR 0 396 3 226 222 0 0 chr21 12625163 12625208 -22282362 + MER5A DNA MER1_type 10 54 -135 23 0 0 0 chr21 12626054 12626077 -22281493 + AT_rich Low_complexity Low_complexity 1 23 0 285 258 106 30 chr21 12626189 12626321 -22281249 - L2 LINE L2 -1 3312 3171 21 57 0 0 chr21 12627552 12627587 -22279983 + AT_rich Low_complexity Low_complexity 1 35 0 235 27 270 0 chr21 12627621 12627658 -22279912 - L1M1 LINE L1 -390 5912 5866 1226 309 72 45 chr21 12628349 12629306 -22278264 + L1MC3 LINE L1 275 1257 -4862 393 326 8 0 chr21 12629756 12629888 -22277682 - MIR SINE MIR -19 243 111 1398 231 107 5 chr21 12630724 12631126 -22276444 + LTR47B LTR ERVL 1 443 0 22 35 0 0 chr21 12631237 12631266 -22276304 + AT_rich Low_complexity Low_complexity 1 29 0 627 276 29 12 chr21 12631637 12631880 -22275690 + L1MC3 LINE L1 3365 3611 -2518 963 290 51 4 chr21 12631984 12632381 -22275189 + L1MC3 LINE L1 3805 4230 -1899 1210 226 103 31 chr21 12632448 12632861 -22274709 + MLT1C LTR MaLR 1 461 -6 2371 62 0 16 chr21 12632896 12633203 -22274367 + AluY SINE Alu 1 302 -9 2518 236 51 32 chr21 12633232 12633986 -22273584 + L1MC3 LINE L1 4402 5177 -952 664 241 0 0 chr21 12633986 12634119 -22273451 + FLAM_A SINE Alu 1 133 0 2518 236 51 32 chr21 12634119 12634261 -22273309 + L1MC3 LINE L1 5177 5315 -814 546 143 0 33 chr21 12634262 12634353 -22273217 + L1MC1 LINE L1 6223 6310 -23 10296 197 35 31 chr21 12634356 12635936 -22271634 + L1MC3 LINE L1 5296 6891 -877 252 77 0 0 chr21 12635936 12635975 -22271595 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 10296 197 35 31 chr21 12635975 12636837 -22270733 + L1MC3 LINE L1 6891 7748 -20 264 77 0 0 chr21 12637796 12637835 -22269735 + (TG)n Simple_repeat Simple_repeat 1 39 0 26 50 0 0 chr21 12637896 12637936 -22269634 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr21 12638194 12638223 -22269347 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 12639010 12639033 -22268537 + AT_rich Low_complexity Low_complexity 1 23 0 1427 214 3 10 chr21 12639883 12640172 -22267398 + AluJb SINE Alu 1 287 -25 22 35 0 0 chr21 12640173 12640202 -22267368 + AT_rich Low_complexity Low_complexity 1 29 0 519 250 24 8 chr21 12640322 12640446 -22267124 + MLT1E3 LTR MaLR 379 504 -120 3482 125 0 4 chr21 12641745 12642250 -22265320 - MER9 LTR ERVK -8 503 1 196 197 16 16 chr21 12643568 12643629 -22263941 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 1816 128 51 65 chr21 12643634 12643987 -22263583 + THE1C LTR MaLR 28 375 0 354 123 0 0 chr21 12643989 12644046 -22263524 + (TA)n Simple_repeat Simple_repeat 2 58 0 229 275 50 38 chr21 12644536 12644616 -22262954 + L2 LINE L2 3187 3267 -5 303 348 94 40 chr21 12644917 12645193 -22262377 - L2 LINE L2 -414 2900 2610 388 297 112 61 chr21 12645347 12645756 -22261814 - L2 LINE L2 -902 2412 1938 28 61 0 37 chr21 12645865 12645947 -22261623 + AT_rich Low_complexity Low_complexity 1 79 0 3947 87 22 0 chr21 12647265 12647807 -22259763 + MER41A LTR ERV1 1 554 0 3611 138 17 30 chr21 12647943 12648545 -22259025 + MER41A-int LTR ERV1 2 595 -5351 3255 173 55 22 chr21 12648538 12649296 -22258274 + MER51-int LTR ERV1 2277 2685 -2195 1050 145 95 0 chr21 12649297 12649476 -22258094 - THE1B LTR MaLR -166 198 3 10383 117 31 3 chr21 12649478 12651015 -22256555 - THE1B-int LTR MaLR 0 1580 1 2177 119 48 20 chr21 12651017 12651369 -22256201 - THE1B LTR MaLR -2 362 1 1433 79 40 5 chr21 12651369 12651571 -22255999 + MER41A LTR ERV1 281 489 -65 408 165 93 10 chr21 12651779 12651876 -22255694 - MLT1D LTR MaLR -3 623 519 880 264 53 56 chr21 12651863 12652238 -22255332 - MLT1D LTR MaLR -106 399 26 378 325 30 30 chr21 12653254 12653420 -22254150 - HERVL40 LTR ERVL -2743 2787 2622 33 0 0 0 chr21 12654615 12654648 -22252922 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr21 12655648 12655670 -22251900 + AT_rich Low_complexity Low_complexity 1 22 0 250 222 25 37 chr21 12656066 12656147 -22251423 + CT-rich Low_complexity Low_complexity 2 81 0 242 291 50 71 chr21 12656160 12656301 -22251269 - L2 LINE L2 -5 3308 3171 26 0 0 0 chr21 12657067 12657093 -22250477 + AT_rich Low_complexity Low_complexity 1 26 0 5920 157 24 4 chr21 12657158 12658166 -22249404 - HSMAR2 DNA Mariner -4 1298 271 487 328 33 0 chr21 12658174 12658357 -22249213 + L1M4 LINE L1 3593 3781 -2365 1183 163 28 113 chr21 12658366 12658567 -22249003 - HSMAR2 DNA Mariner -1008 294 128 2187 98 3 19 chr21 12658567 12658884 -22248686 + AluSx SINE Alu 1 312 0 1183 163 28 113 chr21 12658884 12659001 -22248569 - HSMAR2 DNA Mariner -1174 128 3 21 36 0 0 chr21 12659435 12659463 -22248107 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 12660073 12660102 -22247468 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr21 12661750 12661782 -22245788 + AT_rich Low_complexity Low_complexity 1 32 0 254 200 36 0 chr21 12662489 12662544 -22245026 + GA-rich Low_complexity Low_complexity 2 58 0 25 0 0 0 chr21 12662664 12662689 -22244881 + AT_rich Low_complexity Low_complexity 1 25 0 365 169 12 0 chr21 12662977 12663060 -22244510 + (TA)n Simple_repeat Simple_repeat 1 84 0 343 304 52 5 chr21 12663204 12663395 -22244175 + L1 LINE L1 2333 2532 -3614 26 30 0 0 chr21 12663414 12663447 -22244123 + AT_rich Low_complexity Low_complexity 1 33 0 383 344 68 40 chr21 12663456 12663854 -22243716 + L1 LINE L1 2810 3218 -2928 1324 200 46 25 chr21 12664820 12664934 -22242636 + AluJo SINE Alu 9 119 -193 216 67 0 0 chr21 12664934 12664964 -22242606 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1324 200 46 25 chr21 12664964 12665134 -22242436 + AluJo SINE Alu 119 299 -13 2601 80 11 0 chr21 12665563 12665926 -22241644 - L1PA14 LINE L1 0 6161 5795 2093 141 0 0 chr21 12666089 12666395 -22241175 + AluSx SINE Alu 1 306 -6 2163 97 50 42 chr21 12666399 12666760 -22240810 + THE1B LTR MaLR 1 364 0 496 141 0 0 chr21 12667253 12667331 -22240239 + MADE1 DNA Mariner 1 78 -2 1114 278 52 32 chr21 12667411 12667947 -22239623 - MLT1E2 LTR MaLR -6 620 79 738 211 0 0 chr21 12668084 12668217 -22239353 + FLAM_C SINE Alu 1 133 0 256 315 27 34 chr21 12669019 12669168 -22238402 - LTR16B LTR ERVL -19 445 298 594 346 50 19 chr21 12669243 12669564 -22238006 + LTR16B LTR ERVL 134 464 0 2147 121 0 0 chr21 12670166 12670456 -22237114 + AluSx SINE Alu 1 290 -22 1631 165 52 35 chr21 12670529 12670898 -22236672 - THE1C LTR MaLR 0 375 1 616 84 116 0 chr21 12672059 12672174 -22235396 - AluSg/x SINE Alu 0 301 176 1838 205 8 20 chr21 12673440 12673835 -22233735 - MLT1B LTR MaLR 0 390 1 801 222 19 139 chr21 12673903 12673961 -22233609 + MLT1A2 LTR MaLR 1 64 -310 1868 163 3 3 chr21 12673961 12674262 -22233308 - AluSx SINE Alu -9 303 3 801 222 19 139 chr21 12674262 12674293 -22233277 + MLT1A2 LTR MaLR 64 97 -277 541 44 0 0 chr21 12674293 12674410 -22233160 + L1PA3 LINE L1 6082 6198 0 801 222 19 139 chr21 12674410 12674741 -22232829 + MLT1A2 LTR MaLR 97 372 -2 21 0 0 0 chr21 12676939 12676960 -22230610 + AT_rich Low_complexity Low_complexity 1 21 0 27 73 0 0 chr21 12677011 12677066 -22230504 + AT_rich Low_complexity Low_complexity 1 55 0 23 0 0 0 chr21 12677711 12677734 -22229836 + AT_rich Low_complexity Low_complexity 1 23 0 1612 142 66 77 chr21 12678082 12678461 -22229109 - THE1C LTR MaLR 0 375 1 2448 84 14 14 chr21 12678461 12678816 -22228754 - THE1C-int LTR MaLR 0 1580 1226 1440 154 58 81 chr21 12678821 12679165 -22228405 - THE1C LTR MaLR -39 336 1 22 56 0 0 chr21 12679827 12679863 -22227707 + AT_rich Low_complexity Low_complexity 1 36 0 697 209 166 5 chr21 12680382 12680569 -22227001 - MLT1D LTR MaLR -131 374 158 1889 107 36 26 chr21 12682335 12682675 -22224895 - AluSx SINE Alu 0 343 1 25 0 0 0 chr21 12682969 12682994 -22224576 + AT_rich Low_complexity Low_complexity 1 25 0 237 65 0 0 chr21 12683413 12683444 -22224126 + (TG)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr21 12683810 12683839 -22223731 + AT_rich Low_complexity Low_complexity 1 29 0 1914 270 75 53 chr21 12683896 12684975 -22222595 + L1ME2 LINE L1 5039 6139 -25 323 365 169 28 chr21 12685096 12685600 -22221970 - L3 LINE CR1 -5 1572 998 30 45 0 0 chr21 12686243 12686287 -22221283 + AT_rich Low_complexity Low_complexity 1 44 0 2154 208 41 0 chr21 12687593 12688006 -22219564 - MER52A LTR ERV1 0 1755 1326 398 224 54 0 chr21 12688009 12688156 -22219414 + (TA)n Simple_repeat Simple_repeat 2 156 0 24 53 0 0 chr21 12689911 12689949 -22217621 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr21 12690318 12690358 -22217212 + AT_rich Low_complexity Low_complexity 1 40 0 37 39 0 0 chr21 12691205 12691256 -22216314 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr21 12691955 12691990 -22215580 + AT_rich Low_complexity Low_complexity 1 35 0 1574 265 52 15 chr21 12692489 12693085 -22214485 - L1ME1 LINE L1 -5 6161 5544 1494 264 31 37 chr21 12693430 12693941 -22213629 + LTR40a LTR ERVL 12 519 0 182 224 12 0 chr21 12695036 12695121 -22212449 + (TA)n Simple_repeat Simple_repeat 2 87 0 2105 113 0 0 chr21 12696167 12696458 -22211112 - AluSx SINE Alu -21 291 1 1699 148 86 17 chr21 12696483 12696834 -22210736 + THE1C LTR MaLR 1 375 0 2162 149 6 8 chr21 12696834 12697276 -22210294 + THE1C-int LTR MaLR 1 503 -1077 2270 90 0 0 chr21 12698801 12699100 -22208470 + AluY SINE Alu 1 299 -12 22 0 0 0 chr21 12699513 12699535 -22208035 + AT_rich Low_complexity Low_complexity 1 22 0 1819 140 72 3 chr21 12699829 12700121 -22207449 + AluSx SINE Alu 1 312 0 1381 238 44 59 chr21 12700195 12700761 -22206809 + L1M4 LINE L1 4902 5452 -732 536 112 0 0 chr21 12700761 12700841 -22206729 + MADE1 DNA Mariner 1 80 0 1381 238 44 59 chr21 12700841 12700970 -22206600 + L1M4 LINE L1 5452 5581 -603 382 306 74 39 chr21 12701578 12701862 -22205708 - L1ME LINE L1 -299 5822 5529 962 157 19 13 chr21 12701917 12702076 -22205494 + MER88 LTR ERVL 1 160 -304 3737 148 59 4 chr21 12703399 12704077 -22203493 - L1PA16 LINE L1 -7 6159 5445 28 29 0 0 chr21 12704500 12704535 -22203035 + AT_rich Low_complexity Low_complexity 1 35 0 10435 56 0 1 chr21 12706723 12708824 -22198746 + L1PA6 LINE L1 4048 6153 -1 625 336 70 43 chr21 12708979 12709640 -22197930 + L2 LINE L2 2530 3244 -69 37 23 0 0 chr21 12710413 12710457 -22197113 + AT_rich Low_complexity Low_complexity 1 44 0 2428 169 22 2 chr21 12710671 12711116 -22196454 + L1MB1 LINE L1 5709 6162 -6 910 163 0 0 chr21 12710977 12711124 -22196446 + L1MB1 LINE L1 6024 6170 -19 525 191 0 0 chr21 12711117 12711232 -22196338 + (CA)n Simple_repeat Simple_repeat 2 116 0 315 268 16 16 chr21 12711272 12711395 -22196175 + L1ME2 LINE L1 6037 6159 -5 1521 103 0 14 chr21 12711528 12711742 -22195828 - AluY SINE Alu -15 296 86 180 0 0 0 chr21 12712928 12712948 -22194622 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 270 0 0 0 chr21 12713569 12713599 -22193971 + (T)n Simple_repeat Simple_repeat 1 30 0 2060 130 7 3 chr21 12713765 12714065 -22193505 - AluSg SINE Alu -7 303 3 2058 126 0 10 chr21 12714405 12714786 -22192784 + AluSq SINE Alu 1 313 0 565 348 91 42 chr21 12714986 12715632 -22191938 + L1M4 LINE L1 2443 3120 -3026 22 0 0 0 chr21 12715649 12715671 -22191899 + AT_rich Low_complexity Low_complexity 1 22 0 1318 195 53 18 chr21 12715781 12716063 -22191507 + AluJo SINE Alu 1 292 -20 31 58 0 0 chr21 12716134 12716186 -22191384 + AT_rich Low_complexity Low_complexity 1 52 0 2711 236 35 5 chr21 12716263 12716890 -22190680 + MER82 DNA MER2_type 2 647 -6 1487 212 0 3 chr21 12717267 12717560 -22190010 + AluJo SINE Alu 1 292 -20 415 389 43 0 chr21 12719240 12719518 -22188052 - MLT1J LTR MaLR -219 292 3 6782 71 3 0 chr21 12719533 12721173 -22186397 + L1PA7 LINE L1 4515 6148 -6 403 348 25 6 chr21 12723241 12723399 -22184171 - LTR52 LTR ERVL -260 161 1 472 274 7 41 chr21 12723457 12723553 -22184017 - HERVL74 LTR ERVL -2419 3266 3168 875 258 106 68 chr21 12723553 12724010 -22183560 + MLT2B1 LTR ERVL 1 439 -81 222 37 0 0 chr21 12724010 12724037 -22183533 + (TC)n Simple_repeat Simple_repeat 2 28 0 875 258 106 68 chr21 12724037 12724054 -22183516 + MLT2B1 LTR ERVL 439 454 -66 210 37 0 0 chr21 12724054 12724081 -22183489 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 875 258 106 68 chr21 12724081 12724106 -22183464 + MLT2B1 LTR ERVL 454 520 0 472 274 7 41 chr21 12724106 12724155 -22183415 - HERVL74 LTR ERVL -2517 3168 3126 683 311 0 0 chr21 12724399 12724592 -22182978 - HERVL74 LTR ERVL -2735 2950 2758 1971 127 7 0 chr21 12724601 12724893 -22182677 - THE1B LTR MaLR -70 294 1 1230 225 20 4 chr21 12724893 12725146 -22182424 - HERVL74 LTR ERVL -1052 2504 2248 2890 224 23 21 chr21 12725315 12725976 -22181594 - HERVL74 LTR ERVL -3594 2091 1430 668 269 39 69 chr21 12725982 12726317 -22181253 + LTR52 LTR ERVL 95 419 -2 268 114 45 38 chr21 12729015 12729147 -22178423 + (TA)n Simple_repeat Simple_repeat 2 134 0 513 266 86 0 chr21 12729154 12729293 -22178277 - FRAM SINE Alu -31 145 1 2435 57 0 0 chr21 12730006 12730302 -22177268 + AluY SINE Alu 1 296 -15 3120 139 11 22 chr21 12730979 12731224 -22176346 - L1PA16 LINE L1 -9 6157 5911 2253 86 7 0 chr21 12731224 12731528 -22176042 + AluSc SINE Alu 1 306 -3 3120 139 11 22 chr21 12731528 12731816 -22175754 - L1PA16 LINE L1 -255 5911 5630 1545 163 46 16 chr21 12731822 12731922 -22175648 + L1P4 LINE L1 5068 5164 -1002 1570 140 68 8 chr21 12731922 12732186 -22175384 + AluSx SINE Alu 1 280 -32 369 0 0 0 chr21 12732186 12732227 -22175343 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 1545 163 46 16 chr21 12732227 12732581 -22174989 + L1P4 LINE L1 5163 5537 -629 354 278 23 40 chr21 12732732 12732908 -22174662 - L1MDa LINE L1 -2211 4195 4023 254 327 78 0 chr21 12732898 12733051 -22174519 - L1P LINE L1 -2399 3747 3583 2126 140 0 0 chr21 12733076 12733384 -22174186 - AluSx SINE Alu 0 312 5 1320 273 50 41 chr21 12733395 12734216 -22173354 - L1MDa LINE L1 -2565 3841 3014 190 140 20 20 chr21 12734254 12734304 -22173266 + (TATG)n Simple_repeat Simple_repeat 2 51 0 336 234 52 45 chr21 12734333 12734487 -22173083 - L1MDa LINE L1 -3418 2988 2834 535 298 66 39 chr21 12734488 12734746 -22172824 - L1MDa LINE L1 -3610 2796 2532 1587 271 54 38 chr21 12734748 12735718 -22171852 - L1MDa LINE L1 -3894 2512 1528 336 289 60 49 chr21 12735827 12736111 -22171459 - L1MDa LINE L1 -4985 1411 1125 2159 106 0 13 chr21 12736231 12736534 -22171036 - AluY SINE Alu -12 299 1 327 252 103 0 chr21 12736549 12736656 -22170914 - L1MDa LINE L1 -5394 1015 898 23 0 0 0 chr21 12736667 12736690 -22170880 + AT_rich Low_complexity Low_complexity 1 23 0 979 227 93 51 chr21 12736695 12737008 -22170562 - MLT1D LTR MaLR 0 505 180 1951 136 3 3 chr21 12737029 12737337 -22170233 - L1PA13 LINE L1 -5 6158 5851 5348 154 10 1 chr21 12737337 12738582 -22168988 - L1PA13 LINE L1 -548 5615 4362 806 243 5 16 chr21 12738582 12738771 -22168799 - MLT1D LTR MaLR -310 195 9 216 0 0 0 chr21 12738970 12738994 -22168576 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 2194 80 3 3 chr21 12739001 12739288 -22168282 - AluY SINE Alu -24 287 1 22 0 0 0 chr21 12739437 12739459 -22168111 + AT_rich Low_complexity Low_complexity 1 22 0 642 98 0 22 chr21 12740727 12740819 -22166751 + pTR5 LTR ERV1 1352 1441 -997 712 63 0 0 chr21 12740795 12740890 -22166680 + LTR12 LTR ERV1 148 242 -429 250 211 0 0 chr21 12740891 12740943 -22166627 + LTR30 LTR ERV1 553 604 -118 1572 90 36 5 chr21 12741143 12741366 -22166204 - MER30 DNA MER1_type 0 230 1 635 290 11 27 chr21 12741942 12742128 -22165442 - MER5A DNA MER1_type 0 189 7 2280 103 0 0 chr21 12742911 12743212 -22164358 + AluSc SINE Alu 1 301 -8 734 55 38 77 chr21 12743947 12744130 -22163440 + (ATATG)n Simple_repeat Simple_repeat 1 176 0 379 261 87 31 chr21 12744428 12744623 -22162947 - L1ME4a LINE L1 -267 5854 5649 186 189 0 0 chr21 12746658 12746695 -22160875 + CT-rich Low_complexity Low_complexity 4 40 0 1218 259 28 11 chr21 12746732 12747203 -22160367 - L1MEc LINE L1 -2948 3267 2789 857 244 75 8 chr21 12747323 12747731 -22159839 - L1MEc LINE L1 -3581 2634 2238 1028 218 105 0 chr21 12747731 12747960 -22159610 - MLT1D LTR MaLR -1 504 252 9616 155 17 4 chr21 12747972 12750527 -22157043 + L1PA10 LINE L1 3563 6167 -1 267 79 0 0 chr21 12750562 12750600 -22156970 + (TC)n Simple_repeat Simple_repeat 1 38 0 1025 236 26 0 chr21 12750622 12750851 -22156719 - MLT1D LTR MaLR -268 237 3 427 237 39 43 chr21 12750851 12751058 -22156512 - L1MEc LINE L1 -4177 2219 2014 339 262 117 31 chr21 12751072 12751362 -22156208 - L1MEc LINE L1 -4416 1980 1547 738 243 73 38 chr21 12751527 12751840 -22155730 - L1MEc LINE L1 -5476 920 597 692 276 68 50 chr21 12751865 12752303 -22155267 - L1MEc LINE L1 -5895 501 56 363 281 88 42 chr21 12752327 12752453 -22155117 - L1MC4 LINE L1 -4 8038 7899 2154 125 3 3 chr21 12752453 12752766 -22154804 + AluSp SINE Alu 1 313 0 363 281 88 42 chr21 12752766 12752831 -22154739 - L1MC4 LINE L1 -143 7899 7838 21 36 0 0 chr21 12753622 12753650 -22153920 + AT_rich Low_complexity Low_complexity 1 28 0 908 236 46 29 chr21 12753656 12753936 -22153634 - MLT1F LTR MaLR 0 542 258 186 43 0 0 chr21 12754334 12754357 -22153213 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1080 136 28 6 chr21 12754357 12754523 -22153047 - L1PA10 LINE L1 -17 6151 5979 27 0 0 0 chr21 12754799 12754826 -22152744 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr21 12754980 12755014 -22152556 + AT_rich Low_complexity Low_complexity 1 34 0 24 0 0 0 chr21 12755306 12755330 -22152240 + AT_rich Low_complexity Low_complexity 1 24 0 1187 185 117 12 chr21 12755644 12755969 -22151601 - L1MB8 LINE L1 -16 6162 5804 1651 196 19 5 chr21 12755979 12756346 -22151224 + L1 LINE L1 4936 5307 -839 506 119 22 10 chr21 12756479 12756586 -22150984 + L1M LINE L1 5300 5408 -883 22 70 0 0 chr21 12757430 12757473 -22150097 + AT_rich Low_complexity Low_complexity 1 43 0 1515 199 10 10 chr21 12757473 12757779 -22149791 - AluJb SINE Alu 0 312 7 2395 63 0 3 chr21 12758187 12758489 -22149081 - AluY SINE Alu -10 301 1 1342 84 6 0 chr21 12758508 12758686 -22148884 - AluSg/x SINE Alu 0 310 132 26 74 0 0 chr21 12758956 12759010 -22148560 + AT_rich Low_complexity Low_complexity 1 54 0 33 56 0 0 chr21 12759747 12759801 -22147769 + AT_rich Low_complexity Low_complexity 1 54 0 2374 122 5 24 chr21 12759860 12760229 -22147341 - THE1B LTR MaLR -2 362 1 1000 217 14 0 chr21 12762678 12762899 -22144671 - AluJo SINE Alu 0 312 89 6746 182 28 3 chr21 12762915 12764077 -22143493 + L1M1 LINE L1 148 1339 -6226 315 0 0 0 chr21 12764554 12764589 -22142981 + (TG)n Simple_repeat Simple_repeat 2 36 0 5678 151 41 9 chr21 12764591 12765538 -22142032 - Tigger2 DNA MER2_type -3 2715 1734 7411 36 13 0 chr21 12765538 12767056 -22140514 - L1PA4 LINE L1 0 6155 4628 5678 151 41 9 chr21 12767056 12767089 -22140481 - Tigger2 DNA MER2_type -984 1734 1704 317 104 15 15 chr21 12767101 12767168 -22140402 - L1PB4 LINE L1 0 6156 6090 2292 120 28 14 chr21 12767168 12767527 -22140043 - THE1B LTR MaLR 0 364 1 215 316 127 0 chr21 12767577 12767656 -22139914 - MIR SINE MIR -171 91 3 2278 97 0 0 chr21 12768505 12768794 -22138776 + AluY SINE Alu 9 297 -14 1731 188 7 10 chr21 12768859 12769157 -22138413 + AluJo SINE Alu 12 308 -4 429 323 92 66 chr21 12769847 12770532 -22137038 + L1M4 LINE L1 14 716 -5826 653 195 76 0 chr21 12770761 12770946 -22136624 + L1M4 LINE L1 938 1136 -5510 1267 192 23 99 chr21 12771000 12771395 -22136175 - MLT1A1 LTR MaLR 0 365 1 3081 272 30 26 chr21 12771401 12773038 -22134532 - MLT1A1-int LTR MaLR -6 1729 1 607 225 125 88 chr21 12773039 12773448 -22134122 - MLT1A1 LTR MaLR -2 363 3 1596 247 47 20 chr21 12773458 12774327 -22133243 + L1M4 LINE L1 1174 2106 -4540 198 0 0 0 chr21 12774379 12774401 -22133169 + (TG)n Simple_repeat Simple_repeat 1 22 0 508 341 91 28 chr21 12776212 12776722 -22130848 - L2 LINE L2 -1 3312 2769 332 87 0 0 chr21 12776748 12776794 -22130776 + MADE1 DNA Mariner 35 80 0 671 309 62 24 chr21 12778303 12778643 -22128927 + HERV16 LTR ERVL 1987 2339 -2657 21 36 0 0 chr21 12779417 12779445 -22128125 + AT_rich Low_complexity Low_complexity 1 28 0 288 70 0 0 chr21 12779921 12779964 -22127606 + (TG)n Simple_repeat Simple_repeat 1 43 0 1700 196 0 6 chr21 12780415 12780726 -22126844 - AluJb SINE Alu -1 311 3 23 54 0 0 chr21 12781906 12781943 -22125627 + AT_rich Low_complexity Low_complexity 1 37 0 1508 167 37 14 chr21 12782866 12783160 -22124410 - AluJo SINE Alu -7 305 5 225 154 0 96 chr21 12783247 12783299 -22124271 - MLT1D LTR MaLR -458 47 1 1732 152 14 10 chr21 12783350 12783639 -22123931 + AluSx SINE Alu 1 290 -22 200 309 0 18 chr21 12785525 12785580 -22121990 - L2 LINE L2 -20 3252 3199 29269 119 13 8 chr21 12785757 12792120 -22115450 + L1PA7 LINE L1 6 6462 -7 24 0 0 0 chr21 12793968 12793992 -22113578 + AT_rich Low_complexity Low_complexity 1 24 0 2049 94 35 38 chr21 12795676 12795964 -22111606 + AluSp SINE Alu 1 287 -26 294 275 97 71 chr21 12796407 12796716 -22110854 - LTR16A1 LTR ERVL -2 455 139 2458 68 7 3 chr21 12796884 12797193 -22110377 + AluY SINE Alu 1 310 -1 2315 234 11 32 chr21 12797247 12797720 -22109850 + MER74B LTR ERVL 70 531 -91 1991 132 7 10 chr21 12797720 12797907 -22109663 - AluSq SINE Alu -9 304 117 252 0 0 0 chr21 12797907 12797935 -22109635 + (TA)n Simple_repeat Simple_repeat 1 28 0 1991 132 7 10 chr21 12797935 12798049 -22109521 - AluSq SINE Alu -196 117 4 2315 234 11 32 chr21 12798049 12798140 -22109430 + MER74B LTR ERVL 531 622 0 2461 129 3 3 chr21 12799363 12799727 -22107843 + THE1B LTR MaLR 1 364 0 2400 234 7 48 chr21 12800417 12800995 -22106575 - MLT2B3 LTR ERVL 0 554 1 22 70 0 0 chr21 12802506 12802549 -22105021 + AT_rich Low_complexity Low_complexity 1 43 0 2073 173 16 10 chr21 12802938 12803326 -22104244 + MLT1B LTR MaLR 1 390 0 288 263 32 19 chr21 12803492 12803648 -22103922 + (TA)n Simple_repeat Simple_repeat 2 159 0 25 31 0 0 chr21 12804688 12804720 -22102850 + AT_rich Low_complexity Low_complexity 1 32 0 697 179 52 0 chr21 12807312 12807446 -22100124 + MSTC LTR MaLR 1 141 -287 1292 226 117 11 chr21 12807495 12807853 -22099717 + MSTD LTR MaLR 1 396 0 30 0 0 24 chr21 12809023 12809046 -22098524 + AT_rich Low_complexity Low_complexity 1 24 -16 2301 112 40 0 chr21 12809046 12809394 -22098176 + L1PA10 LINE L1 5802 6163 -5 30 0 0 24 chr21 12809394 12809411 -22098159 + AT_rich Low_complexity Low_complexity 24 40 0 290 315 24 47 chr21 12809663 12809790 -22097780 + MIR SINE MIR 29 152 -110 2302 76 0 3 chr21 12811009 12811312 -22096258 + AluY SINE Alu 1 302 -9 569 251 105 6 chr21 12811434 12811605 -22095965 - MER5A DNA MER1_type 0 189 2 2215 172 52 0 chr21 12812040 12812447 -22095123 + MSTA LTR MaLR 1 428 0 23 0 0 0 chr21 12812704 12812727 -22094843 + AT_rich Low_complexity Low_complexity 1 23 0 1455 171 10 63 chr21 12812820 12813119 -22094451 + AluJb SINE Alu 2 284 -28 2247 62 0 0 chr21 12815488 12815762 -22091808 - AluY SINE Alu -12 299 26 496 197 8 33 chr21 12815776 12815898 -22091672 - L1MB8 LINE L1 -6 6172 6054 433 145 0 0 chr21 12815914 12815983 -22091587 - MLT1A1 LTR MaLR -16 349 281 2238 137 15 101 chr21 12816036 12816277 -22091293 - MSTB LTR MaLR 0 426 166 2108 105 7 0 chr21 12816277 12816572 -22090998 - AluSp SINE Alu -15 298 2 2238 137 15 101 chr21 12816572 12816613 -22090957 - MSTB LTR MaLR -260 166 123 1777 149 27 3 chr21 12816613 12816914 -22090656 - AluSx SINE Alu -4 308 1 2238 137 15 101 chr21 12816914 12817096 -22090474 - MSTB LTR MaLR -303 123 1 1259 245 65 40 chr21 12817096 12817318 -22090252 - L1M4 LINE L1 -663 5791 5576 1765 84 0 52 chr21 12817318 12817569 -22090001 - AluSc SINE Alu -2 307 70 1259 245 65 40 chr21 12817569 12818567 -22089003 - L1M4 LINE L1 -878 5576 4506 430 235 67 20 chr21 12818570 12818719 -22088851 - L1M4 LINE L1 -2335 4091 3936 1238 279 29 13 chr21 12818724 12819271 -22088299 - L1M4 LINE L1 -3558 2868 2315 466 294 61 86 chr21 12819334 12819365 -22088205 - L1M4 LINE L1 -4321 2286 2256 2283 69 0 10 chr21 12819365 12819656 -22087914 - AluY SINE Alu -23 288 1 466 294 61 86 chr21 12819656 12820053 -22087517 - L1M4 LINE L1 -4351 2256 1869 316 203 0 0 chr21 12820234 12820293 -22087277 - L1M4 LINE L1 -4588 1838 1780 590 322 17 0 chr21 12820295 12820469 -22087101 + HERVL40 LTR ERVL 2744 2920 -2610 631 251 57 0 chr21 12820680 12820855 -22086715 + HERVL40 LTR ERVL 3412 3596 -1934 1532 180 83 79 chr21 12822434 12822913 -22084657 + MER39 LTR ERV1 1 581 -126 1829 149 7 13 chr21 12822913 12823215 -22084355 + AluJb SINE Alu 1 300 -12 1532 180 83 79 chr21 12823215 12823341 -22084229 + MER39 LTR ERV1 581 705 -2 1832 48 0 4 chr21 12823585 12823813 -22083757 - AluY SINE Alu 0 311 85 2051 83 22 11 chr21 12824763 12825080 -22082490 - AluSg SINE Alu 0 320 1 368 253 21 0 chr21 12825371 12825466 -22082104 - MER5A DNA MER1_type -84 105 9 1894 161 107 13 chr21 12825789 12826180 -22081390 + MSTA LTR MaLR 1 428 0 1259 187 90 4 chr21 12826873 12827151 -22080419 + MER67C LTR ERV1 69 370 -340 709 130 39 143 chr21 12827171 12827401 -22080169 - L1MA8 LINE L1 -5 6286 6081 1606 159 7 26 chr21 12827417 12827719 -22079851 - L1MA8 LINE L1 -198 6093 5798 424 188 30 20 chr21 12827812 12827913 -22079657 + MER67D LTR ERV1 306 407 -107 537 222 20 13 chr21 12828302 12828455 -22079115 - L1M4 LINE L1 -1293 4853 4700 1954 148 0 0 chr21 12828470 12828768 -22078802 - AluSx SINE Alu -14 298 1 567 226 54 17 chr21 12828768 12828995 -22078575 - L1M4 LINE L1 -1489 4657 4414 260 252 184 10 chr21 12829524 12829627 -22077943 - L1MC4 LINE L1 -132 7910 7790 1976 172 37 38 chr21 12830124 12830681 -22076889 + MLT2A2 LTR ERVL 1 552 -2 323 151 0 0 chr21 12830954 12831007 -22076563 - MLT1E1 LTR MaLR -9 645 593 2033 212 30 20 chr21 12831134 12831630 -22075940 - L1M4 LINE L1 -2207 3939 3439 2115 204 15 57 chr21 12831640 12832185 -22075385 + L1MB1 LINE L1 4569 5090 -1056 4532 172 24 9 chr21 12832201 12833084 -22074486 + L1MB1 LINE L1 5272 6167 -1 24 0 0 0 chr21 12833195 12833219 -22074351 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr21 12833406 12833443 -22074127 + AT_rich Low_complexity Low_complexity 1 37 0 206 146 0 24 chr21 12833466 12833507 -22074063 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 1540 195 51 54 chr21 12833553 12833883 -22073687 + MER65C LTR ERV1 12 381 -150 1774 116 62 11 chr21 12833883 12834158 -22073412 - AluSx SINE Alu -5 307 19 1540 195 51 54 chr21 12834158 12834309 -22073261 + MER65C LTR ERV1 381 531 0 1686 169 0 20 chr21 12835082 12835377 -22072193 + AluJb SINE Alu 1 289 -23 23 54 0 0 chr21 12835508 12835545 -22072025 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 12835566 12835587 -22071983 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 12835853 12835875 -22071695 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr21 12836228 12836259 -22071311 + AT_rich Low_complexity Low_complexity 1 31 0 241 316 51 40 chr21 12836752 12836929 -22070641 + L2 LINE L2 3135 3313 0 25 51 0 0 chr21 12838396 12838435 -22069135 + AT_rich Low_complexity Low_complexity 1 39 0 225 182 91 0 chr21 12838743 12838798 -22068772 - L1MC4 LINE L1 -1339 6703 6644 421 298 44 13 chr21 12839284 12839512 -22068058 - HAL1 LINE L1 -1171 1336 1102 37 18 0 18 chr21 12839512 12839531 -22068039 + AT_rich Low_complexity Low_complexity 1 19 -35 1711 155 25 0 chr21 12839531 12839809 -22067761 + AluJb SINE Alu 1 285 -27 37 18 0 18 chr21 12839809 12839844 -22067726 + AT_rich Low_complexity Low_complexity 19 54 0 1657 256 70 62 chr21 12839928 12840357 -22067213 - L1ME2 LINE L1 -15 6149 5710 1809 184 3 0 chr21 12840357 12840661 -22066909 + AluJb SINE Alu 1 305 -7 1657 256 70 62 chr21 12840661 12840990 -22066580 - L1ME2 LINE L1 -454 5710 5385 1577 157 8 0 chr21 12841078 12841326 -22066244 - AluSx SINE Alu -62 250 1 328 250 33 43 chr21 12841326 12841418 -22066152 - L1M4b LINE L1 -6758 101 11 180 125 0 0 chr21 12842190 12842222 -22065348 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 945 172 5 84 chr21 12842225 12842440 -22065130 - AluJo SINE Alu -29 283 86 194 108 54 0 chr21 12842522 12842559 -22065011 + (CATA)n Simple_repeat Simple_repeat 2 40 0 195 132 0 105 chr21 12842572 12842648 -22064922 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 720 269 16 0 chr21 12843177 12843363 -22064207 - MLT1D LTR MaLR 0 505 317 933 110 24 43 chr21 12843380 12843544 -22064026 - THE1B LTR MaLR -55 309 149 741 257 8 65 chr21 12843588 12843833 -22063737 - MLT1D LTR MaLR -262 243 13 21 0 0 0 chr21 12844210 12844231 -22063339 + AT_rich Low_complexity Low_complexity 1 21 0 672 152 7 46 chr21 12844536 12844687 -22062883 + L1 LINE L1 5221 5365 -781 3815 208 42 21 chr21 12844720 12844952 -22062618 + L1PB4 LINE L1 5272 5498 -658 2020 141 51 25 chr21 12844952 12845307 -22062263 + THE1B LTR MaLR 1 364 0 11054 108 6 1 chr21 12845307 12846879 -22060691 + THE1B-int LTR MaLR 1 1580 0 1907 151 54 26 chr21 12846881 12847233 -22060337 + THE1B LTR MaLR 3 364 0 3815 208 42 21 chr21 12847233 12847519 -22060051 + L1PB4 LINE L1 5498 5777 -379 321 26 0 0 chr21 12847519 12847557 -22060013 + (TG)n Simple_repeat Simple_repeat 1 38 0 3815 208 42 21 chr21 12847557 12847895 -22059675 + L1PB4 LINE L1 5777 6151 -5 26 30 0 0 chr21 12849084 12849117 -22058453 + AT_rich Low_complexity Low_complexity 1 33 0 29 0 0 0 chr21 12849286 12849315 -22058255 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr21 12849470 12849509 -22058061 + AT_rich Low_complexity Low_complexity 1 39 0 2183 105 3 0 chr21 12850146 12850450 -22057120 - AluY SINE Alu -6 305 1 207 0 0 0 chr21 12850540 12850563 -22057007 + (TTA)n Simple_repeat Simple_repeat 2 24 0 310 276 60 52 chr21 12851380 12851514 -22056056 + L2 LINE L2 3176 3310 -3 9820 159 26 26 chr21 12852774 12853196 -22054374 + Tigger1 DNA MER2_type 2 423 -1995 2473 74 0 0 chr21 12853196 12853506 -22054064 + AluSg SINE Alu 1 310 0 9820 159 26 26 chr21 12853506 12854893 -22052677 + Tigger1 DNA MER2_type 422 1811 -607 2555 156 21 5 chr21 12854891 12855328 -22052242 + Tigger1 DNA MER2_type 1975 2418 0 1234 209 75 4 chr21 12855626 12855746 -22051824 + AluJo SINE Alu 3 113 -199 351 113 0 0 chr21 12855746 12855799 -22051771 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 1234 209 75 4 chr21 12855799 12855956 -22051614 + AluJo SINE Alu 113 300 -12 225 333 30 20 chr21 12857081 12857180 -22050390 + MIR SINE MIR 30 129 -133 988 240 126 76 chr21 12858097 12858572 -22048998 + MLT1D LTR MaLR 1 499 -6 1696 239 48 39 chr21 12858638 12858833 -22048737 + MLT1D-int LTR MaLR 32 224 -1147 198 0 0 0 chr21 12858833 12858855 -22048715 + (TG)n Simple_repeat Simple_repeat 2 23 0 1696 239 48 39 chr21 12858855 12859283 -22048287 + MLT1D-int LTR MaLR 224 661 -710 1012 262 15 65 chr21 12859664 12859988 -22047582 + MLT1D-int LTR MaLR 957 1264 -107 434 252 31 0 chr21 12859995 12860122 -22047448 + MLT1D-int LTR MaLR 1237 1367 -4 889 216 30 35 chr21 12860146 12860378 -22047192 + MLT1D LTR MaLR 18 248 -257 426 117 72 99 chr21 12860483 12860594 -22046976 + MLT1D LTR MaLR 398 505 0 243 233 33 40 chr21 12861000 12861150 -22046420 + (CATAA)n Simple_repeat Simple_repeat 5 153 0 287 221 52 23 chr21 12861173 12861345 -22046225 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 329 207 71 0 chr21 12861491 12861631 -22045939 + (TA)n Simple_repeat Simple_repeat 1 150 0 282 29 0 0 chr21 12862151 12862186 -22045384 + (TG)n Simple_repeat Simple_repeat 2 36 0 611 260 72 31 chr21 12862187 12862410 -22045160 - MLT2D LTR ERVL -63 351 120 7900 226 58 28 chr21 12862411 12863983 -22043587 - ERVL-D LTR ERVL -3538 2226 586 1543 160 0 0 chr21 12863983 12864220 -22043350 - AluSg/x SINE Alu -2 308 72 7900 226 58 28 chr21 12864220 12864527 -22043043 - ERVL-D LTR ERVL -5178 586 290 1011 126 0 0 chr21 12864551 12864710 -22042860 + (TA)n Simple_repeat Simple_repeat 2 160 0 21 0 0 0 chr21 12864856 12864877 -22042693 + AT_rich Low_complexity Low_complexity 1 21 0 754 175 0 14 chr21 12864903 12865046 -22042524 + L1PB3 LINE L1 6005 6145 -9 26 30 0 0 chr21 12865046 12865079 -22042491 + AT_rich Low_complexity Low_complexity 1 33 0 669 184 59 0 chr21 12865079 12865215 -22042355 - L1MA4 LINE L1 -8 6292 6149 921 213 44 88 chr21 12865231 12865574 -22041996 - MLT2D LTR ERVL 0 414 87 432 305 128 34 chr21 12865600 12865777 -22041793 + L1MC4a LINE L1 7114 7273 -535 1717 149 0 44 chr21 12865777 12866135 -22041435 + AluSx SINE Alu 1 345 0 432 305 128 34 chr21 12866135 12866253 -22041317 + L1MC4a LINE L1 7273 7439 -369 3847 147 5 68 chr21 12866426 12866756 -22040814 + LTR8 LTR ERV1 1 262 -429 2043 85 0 41 chr21 12866756 12867086 -22040484 - AluY SINE Alu 0 319 2 3847 147 5 68 chr21 12867086 12867491 -22040079 + LTR8 LTR ERV1 262 691 0 21 0 0 0 chr21 12867704 12867725 -22039845 + AT_rich Low_complexity Low_complexity 1 21 0 468 172 0 0 chr21 12867733 12867820 -22039750 + (TA)n Simple_repeat Simple_repeat 2 88 0 934 234 79 15 chr21 12867823 12868088 -22039482 + MER67C LTR ERV1 123 404 -306 307 189 11 53 chr21 12868122 12868217 -22039353 + MER67D LTR ERV1 288 378 -136 2449 168 82 21 chr21 12868305 12868866 -22038704 - LTR49 LTR ERV1 0 595 1 3891 56 23 0 chr21 12870078 12870557 -22037013 + LTR2B LTR ERV1 1 490 0 27 29 0 0 chr21 12870724 12870758 -22036812 + AT_rich Low_complexity Low_complexity 1 34 0 4970 168 17 8 chr21 12871341 12872236 -22035334 + MER4D LTR ERV1 1 903 0 3740 118 4 2 chr21 12872589 12873142 -22034428 - MER41A LTR ERV1 0 554 1 529 265 74 26 chr21 12873157 12873466 -22034104 - L1M4 LINE L1 -1460 4686 4363 832 231 54 5 chr21 12873830 12874033 -22033537 - L1MC3 LINE L1 -597 7188 6976 1759 86 119 4 chr21 12874425 12874693 -22032877 + AluSg SINE Alu 1 299 -1 2274 107 3 0 chr21 12875266 12875574 -22031996 - AluSg SINE Alu -1 309 1 895 187 72 0 chr21 12876302 12876468 -22031102 + AluJo SINE Alu 86 263 -49 499 212 179 83 chr21 12876538 12876778 -22030792 - MLT1J LTR MaLR -5 506 244 1215 146 15 10 chr21 12876799 12877004 -22030566 + L1PB4 LINE L1 5943 6148 -8 180 0 0 0 chr21 12877070 12877090 -22030480 + (A)n Simple_repeat Simple_repeat 1 20 0 1987 80 66 7 chr21 12877090 12877376 -22030194 + AluYa5 SINE Alu 1 303 -8 2142 95 3 0 chr21 12877376 12877683 -22029887 + AluSq SINE Alu 1 308 0 22 35 0 0 chr21 12878780 12878809 -22028761 + AT_rich Low_complexity Low_complexity 1 29 0 736 128 15 8 chr21 12879737 12879870 -22027700 + CT-rich Low_complexity Low_complexity 3 136 0 197 320 99 23 chr21 12879935 12880107 -22027463 + L2 LINE L2 2197 2381 -933 598 264 60 28 chr21 12880725 12880941 -22026629 - MIR SINE MIR 0 262 40 1650 188 24 72 chr21 12881995 12882411 -22025159 + MSTD LTR MaLR 1 396 0 25 31 0 0 chr21 12883344 12883376 -22024194 + AT_rich Low_complexity Low_complexity 1 32 0 310 239 116 14 chr21 12883585 12883723 -22023847 - L1MC5 LINE L1 -36 7925 7774 199 281 35 0 chr21 12883897 12883954 -22023616 - MER5A DNA MER1_type -76 113 55 1084 215 0 5 chr21 12885363 12885577 -22021993 - AluJo SINE Alu -90 222 10 2280 103 3 0 chr21 12885943 12886243 -22021327 - AluSg SINE Alu -9 301 1 1311 209 6 68 chr21 12886454 12886775 -22020795 - AluJo SINE Alu 0 302 2 2249 96 3 7 chr21 12887438 12887739 -22019831 - AluSx SINE Alu -12 300 1 1485 206 64 148 chr21 12888847 12889640 -22017930 + LTR8A LTR ERV1 1 727 0 25 31 0 0 chr21 12891721 12891753 -22015817 + AT_rich Low_complexity Low_complexity 1 32 0 1726 169 0 7 chr21 12891753 12892043 -22015527 - AluSx SINE Alu -24 288 1 3115 165 2 30 chr21 12893877 12894029 -22013541 - MER50 LTR ERV1 -23 711 556 2350 82 0 3 chr21 12894029 12894332 -22013238 + AluSg SINE Alu 5 306 -4 3115 165 2 30 chr21 12894332 12894736 -22012834 - MER50 LTR ERV1 -178 556 171 997 86 0 0 chr21 12894742 12894881 -22012689 - AluY SINE Alu 0 311 173 1070 129 58 0 chr21 12894881 12895052 -22012518 - MER50 LTR ERV1 -553 181 1 1313 205 66 90 chr21 12895637 12896212 -22011358 - MER34B LTR ERV1 0 565 5 21 0 0 0 chr21 12897188 12897209 -22010361 + AT_rich Low_complexity Low_complexity 1 21 0 1088 297 57 41 chr21 12897962 12898470 -22009100 - LTR40a LTR ERVL -2 517 2 227 101 14 43 chr21 12898616 12898685 -22008885 + (TA)n Simple_repeat Simple_repeat 1 67 0 975 34 0 0 chr21 12899833 12899952 -22007618 - L1PA4 LINE L1 -3 6152 6034 222 37 0 0 chr21 12900704 12900731 -22006839 + (TC)n Simple_repeat Simple_repeat 1 27 0 400 282 60 39 chr21 12900733 12900967 -22006603 - L1ME LINE L1 -314 5807 5569 1350 94 0 0 chr21 12901160 12901340 -22006230 - THE1C LTR MaLR -195 180 1 218 179 18 0 chr21 12901977 12902033 -22005537 + (TA)n Simple_repeat Simple_repeat 1 57 0 25 31 0 0 chr21 12902142 12902174 -22005396 + AT_rich Low_complexity Low_complexity 1 32 0 771 93 0 25 chr21 12902187 12902305 -22005265 - AluSp/q SINE Alu -23 290 176 391 341 6 0 chr21 12902815 12902991 -22004579 + (TA)n Simple_repeat Simple_repeat 2 178 0 228 67 0 0 chr21 12903016 12903046 -22004524 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2184 231 82 41 chr21 12903790 12904370 -22003200 - L1MD3 LINE L1 0 7995 7440 234 342 0 0 chr21 12904370 12904446 -22003124 - MLT1F1 LTR MaLR -457 110 35 2184 231 82 41 chr21 12904446 12904831 -22002739 - L1MD3 LINE L1 -555 7440 6697 1264 199 82 61 chr21 12904946 12905323 -22002247 - MLT1B LTR MaLR 0 390 6 1311 226 109 88 chr21 12905326 12906053 -22001517 + LTR1B LTR ERV1 1 742 -84 28 0 0 0 chr21 12906365 12906393 -22001177 + AT_rich Low_complexity Low_complexity 1 28 0 1714 172 0 44 chr21 12908823 12908958 -21998612 + AluJb SINE Alu 1 140 -172 6148 33 1 0 chr21 12908958 12909694 -21997876 + L1PA4 LINE L1 5419 6155 0 1714 172 0 44 chr21 12909694 12909877 -21997693 + AluJb SINE Alu 140 305 -7 1379 231 40 23 chr21 12909991 12910342 -21997228 + MLT1A1 LTR MaLR 1 357 -8 268 284 44 54 chr21 12910378 12910582 -21996988 + L1ME LINE L1 1006 1207 -5323 522 290 82 79 chr21 12910769 12911284 -21996286 + L1ME LINE L1 1442 1979 -4561 352 293 13 7 chr21 12911509 12911659 -21995911 + L1ME LINE L1 2320 2470 -4251 529 25 0 63 chr21 12911815 12911894 -21995676 + AluY SINE Alu 227 300 -11 2163 274 30 14 chr21 12911898 12912772 -21994798 + L1ME LINE L1 2637 3524 -3016 407 165 0 117 chr21 12912842 12912945 -21994625 - MER76 LTR ERV -597 91 1 985 118 12 35 chr21 12913431 12913550 -21994020 - L1PB1 LINE L1 -1 6150 6035 2461 93 8 3 chr21 12913550 12913903 -21993667 - THE1A LTR MaLR 0 355 1 985 118 12 35 chr21 12913903 12913953 -21993617 - L1PB1 LINE L1 -116 6035 5985 836 130 0 55 chr21 12913953 12914099 -21993471 + L1P5 LINE L1 5656 5793 -358 291 93 0 0 chr21 12914111 12914154 -21993416 + (CA)n Simple_repeat Simple_repeat 2 44 0 446 309 93 39 chr21 12914447 12914706 -21992864 + L1ME LINE L1 4240 4512 -2028 4486 202 40 52 chr21 12917251 12918377 -21989193 + MER89-int LTR ERV1 2841 3952 -2849 2286 237 8 16 chr21 12918383 12918894 -21988676 + MER89-int LTR ERV1 6290 6796 -5 410 245 11 0 chr21 12918898 12918992 -21988578 + MER89 LTR ERV1 1 95 -464 205 342 114 0 chr21 12919570 12919649 -21987921 + MIR SINE MIR 50 137 -125 2206 65 0 0 chr21 12920453 12920729 -21986841 - AluY SINE Alu 0 311 36 1972 123 29 16 chr21 12921319 12921628 -21985942 + AluSq SINE Alu 1 313 0 21 57 0 0 chr21 12922375 12922410 -21985160 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 12922598 12922619 -21984951 + AT_rich Low_complexity Low_complexity 1 21 0 657 250 18 62 chr21 12923101 12923325 -21984245 + MLT1A2 LTR MaLR 1 214 -160 24 0 0 0 chr21 12924647 12924671 -21982899 + AT_rich Low_complexity Low_complexity 1 24 0 2171 123 0 0 chr21 12926248 12926549 -21981021 - AluSx SINE Alu -11 301 1 880 167 41 72 chr21 12926888 12927274 -21980296 + L1MB3 LINE L1 5288 5793 -390 362 213 11 0 chr21 12927310 12927404 -21980166 + (TA)n Simple_repeat Simple_repeat 2 96 0 285 29 0 0 chr21 12927404 12927438 -21980132 + (CA)n Simple_repeat Simple_repeat 2 35 0 2178 107 3 0 chr21 12927441 12927732 -21979838 - AluSx SINE Alu -20 292 1 1839 162 36 8 chr21 12927742 12928101 -21979469 + L1MB3 LINE L1 5804 6172 -11 6781 70 6 0 chr21 12929940 12931216 -21976354 - L1PA7 LINE L1 0 6154 4877 2791 100 81 24 chr21 12931216 12931675 -21975895 + L1P LINE L1 2086 2570 -3576 420 181 12 0 chr21 12932585 12932668 -21974902 - L1MA6 LINE L1 0 6300 6217 1703 157 39 0 chr21 12932670 12932975 -21974595 + L1MA6 LINE L1 5621 5937 -363 2113 136 0 0 chr21 12933241 12933550 -21974020 + AluSc SINE Alu 1 309 0 22 70 0 0 chr21 12933894 12933937 -21973633 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr21 12934060 12934097 -21973473 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 12934538 12934559 -21973011 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 12934746 12934779 -21972791 + AT_rich Low_complexity Low_complexity 1 33 0 331 89 0 0 chr21 12935704 12935760 -21971810 + L1PA3 LINE L1 6100 6155 0 21 0 0 0 chr21 12936006 12936027 -21971543 + AT_rich Low_complexity Low_complexity 1 21 0 2198 225 19 6 chr21 12936235 12936747 -21970823 - LTR53 LTR ERVL 0 519 1 24 0 0 0 chr21 12937378 12937402 -21970168 + AT_rich Low_complexity Low_complexity 1 24 0 571 121 0 0 chr21 12937402 12937493 -21970077 - L1MA8 LINE L1 -6 6285 6195 216 0 0 0 chr21 12938649 12938673 -21968897 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1879 149 0 4 chr21 12938676 12938957 -21968613 - AluSg SINE Alu -30 280 1 22 0 0 0 chr21 12939447 12939469 -21968101 + AT_rich Low_complexity Low_complexity 1 22 0 366 154 0 0 chr21 12940287 12940365 -21967205 + GA-rich Low_complexity Low_complexity 2 79 0 4683 169 42 0 chr21 12940592 12941436 -21966134 - L1PA16 LINE L1 -3 6163 5285 7152 235 11 1 chr21 12941447 12943083 -21964487 + L1PA16 LINE L1 3607 5258 -888 419 274 101 30 chr21 12944088 12944256 -21963314 - MIR SINE MIR -21 241 62 1733 256 100 33 chr21 12945306 12945888 -21961682 + MER74B LTR ERVL 1 621 -1 1498 189 6 22 chr21 12946691 12947008 -21960562 + AluJb SINE Alu 1 312 0 261 57 0 0 chr21 12947017 12947052 -21960518 + (GA)n Simple_repeat Simple_repeat 2 36 0 1913 157 0 0 chr21 12948434 12948728 -21958842 + AluSx SINE Alu 1 294 -18 192 40 0 0 chr21 12948914 12948939 -21958631 + (TC)n Simple_repeat Simple_repeat 2 26 0 288 111 0 0 chr21 12949561 12949606 -21957964 + (TG)n Simple_repeat Simple_repeat 2 46 0 1627 200 79 9 chr21 12950904 12951234 -21956336 - MLT1A1 LTR MaLR -12 353 1 297 296 30 15 chr21 12952075 12952207 -21955363 - LTR33 LTR ERVL -4 517 384 258 192 0 0 chr21 12952341 12952393 -21955177 + (TG)n Simple_repeat Simple_repeat 2 53 0 1188 227 12 102 chr21 12952432 12952833 -21954737 + MLT1A1 LTR MaLR 1 365 0 237 98 0 0 chr21 12953035 12953076 -21954494 + (TG)n Simple_repeat Simple_repeat 2 42 0 625 69 0 0 chr21 12955189 12955276 -21952294 - L1PB4 LINE L1 -1 6155 6069 201 133 0 0 chr21 12956449 12956479 -21951091 + (CA)n Simple_repeat Simple_repeat 1 30 0 189 0 0 0 chr21 12957055 12957076 -21950494 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 375 340 101 0 chr21 12957690 12957958 -21949612 - L2 LINE L2 -247 3066 2776 23 78 0 0 chr21 12958677 12958728 -21948842 + AT_rich Low_complexity Low_complexity 1 51 0 225 0 0 0 chr21 12958761 12958786 -21948784 + (TG)n Simple_repeat Simple_repeat 2 26 0 849 285 0 8 chr21 12959027 12959262 -21948308 + LTR16C LTR ERVL 259 491 0 330 67 0 0 chr21 12960706 12960751 -21946819 + (CA)n Simple_repeat Simple_repeat 1 45 0 243 281 0 61 chr21 12960772 12960854 -21946716 + MER5A DNA MER1_type 33 109 -80 23 54 0 0 chr21 12961125 12961162 -21946408 + AT_rich Low_complexity Low_complexity 1 37 0 719 225 12 0 chr21 12962683 12962843 -21944727 + MLT2B1 LTR ERVL 2 163 -357 311 321 105 38 chr21 12962893 12963102 -21944468 + MLT1H LTR MaLR 92 314 -235 27 29 0 0 chr21 12963781 12963815 -21943755 + AT_rich Low_complexity Low_complexity 1 34 0 465 254 0 0 chr21 12964085 12964195 -21943375 - LTR40a LTR ERVL -61 458 349 642 308 60 30 chr21 12964333 12964567 -21943003 - LTR40a LTR ERVL -175 344 96 2114 233 39 22 chr21 12964567 12965027 -21942543 + MER70A LRE ERV 3 470 -2 642 308 60 30 chr21 12965027 12965123 -21942447 - LTR40a LTR ERVL -423 96 4 1298 215 7 22 chr21 12966774 12967048 -21940522 - AluJo SINE Alu -14 298 29 3680 32 0 1 chr21 12967102 12967732 -21939838 - L1PA4 LINE L1 -575 5580 4952 4801 29 0 9 chr21 12967732 12968313 -21939257 + L1PA4 LINE L1 5579 6155 0 1489 217 13 63 chr21 12968428 12968806 -21938764 + MLT1A1 LTR MaLR 7 365 0 22 0 0 0 chr21 12969487 12969509 -21938061 + AT_rich Low_complexity Low_complexity 1 22 0 2460 33 3 0 chr21 12970701 12971002 -21936568 + L1PA5 LINE L1 5853 6154 0 1883 131 65 0 chr21 12971336 12971626 -21935944 + AluSp SINE Alu 3 311 -2 581 177 3 0 chr21 12971790 12971906 -21935664 - MLT1C LTR MaLR -51 416 317 2125 153 8 36 chr21 12971926 12972311 -21935259 - L1PA16 LINE L1 0 6166 5793 306 0 0 0 chr21 12972311 12972345 -21935225 + (TG)n Simple_repeat Simple_repeat 2 35 0 192 234 0 0 chr21 12972345 12972392 -21935178 + (TA)n Simple_repeat Simple_repeat 2 48 0 2603 165 45 75 chr21 12972394 12972876 -21934694 - L1PA16 LINE L1 -375 5791 5296 1711 138 4 33 chr21 12972876 12973151 -21934419 - AluSx SINE Alu -45 267 1 2603 165 45 75 chr21 12973151 12973782 -21933788 - L1PA16 LINE L1 -870 5296 4690 21 0 0 0 chr21 12974361 12974382 -21933188 + AT_rich Low_complexity Low_complexity 1 21 0 686 183 59 7 chr21 12975093 12975246 -21932324 + MLT1D LTR MaLR 343 503 -2 2207 66 0 4 chr21 12976305 12976579 -21930991 + AluY SINE Alu 24 296 -15 1010 226 0 0 chr21 12976631 12976817 -21930753 + MLT1B LTR MaLR 203 388 -2 22 0 0 0 chr21 12977564 12977586 -21929984 + AT_rich Low_complexity Low_complexity 1 22 0 1465 196 73 3 chr21 12977838 12978179 -21929391 + MLT1A1 LTR MaLR 1 365 0 4042 158 23 5 chr21 12978379 12979685 -21927885 + L1MA1 LINE L1 4541 5873 -429 1380 91 0 35 chr21 12979691 12979888 -21927682 - AluY SINE Alu -5 306 117 2582 148 14 2 chr21 12979888 12980320 -21927250 + L1MA1 LINE L1 5858 6294 -8 27 49 0 0 chr21 12980601 12980642 -21926928 + AT_rich Low_complexity Low_complexity 1 41 0 252 130 0 0 chr21 12980995 12981041 -21926529 + (TG)n Simple_repeat Simple_repeat 2 47 0 31 26 0 0 chr21 12981324 12981362 -21926208 + AT_rich Low_complexity Low_complexity 1 38 0 49 76 0 0 chr21 12981724 12981829 -21925741 + AT_rich Low_complexity Low_complexity 1 105 0 22 56 0 0 chr21 12981911 12981947 -21925623 + AT_rich Low_complexity Low_complexity 1 36 0 552 192 48 0 chr21 12982873 12982998 -21924572 - MER34 LTR ERV1 0 542 412 33 43 0 0 chr21 12984434 12984481 -21923089 + AT_rich Low_complexity Low_complexity 1 47 0 343 321 12 56 chr21 12984502 12984664 -21922906 + MIR SINE MIR 3 157 -105 940 255 72 25 chr21 12985414 12986028 -21921542 - L1MEc LINE L1 -3460 2755 2152 285 160 20 0 chr21 12986071 12986121 -21921449 - MER66B LTR ERV1 -141 345 295 244 111 0 0 chr21 12986128 12986173 -21921397 - L1MEc LINE L1 -4257 2139 2095 695 249 123 46 chr21 12986216 12986804 -21920766 - L1MEc LINE L1 -4313 2083 1445 414 287 68 41 chr21 12986939 12987333 -21920237 - L1MEc LINE L1 -5039 1357 953 694 313 77 62 chr21 12987334 12988047 -21919523 - L1MEc LINE L1 -5455 941 218 1829 121 6 62 chr21 12991673 12991996 -21915574 - AluSx SINE Alu -7 305 1 4193 95 2 3 chr21 12992230 12992822 -21914748 - L1PA13 LINE L1 -4 6159 5569 928 70 44 19 chr21 12992826 12992984 -21914586 + L1P LINE L1 5258 5419 -744 1441 214 28 42 chr21 12993486 12993841 -21913729 - MLT1D LTR MaLR -25 480 131 1374 186 12 4 chr21 12993844 12994096 -21913474 - AluJo SINE Alu -58 254 1 551 177 31 0 chr21 12994096 12994192 -21913378 - MLT1D LTR MaLR -385 120 22 2080 112 6 13 chr21 12994807 12995120 -21912450 + AluSp SINE Alu 1 311 -2 2076 93 6 55 chr21 12996689 12997001 -21910569 + AluSq SINE Alu 1 297 -16 31 58 0 0 chr21 12997035 12997087 -21910483 + AT_rich Low_complexity Low_complexity 1 52 0 224 244 0 70 chr21 12997855 12997941 -21909629 - L2 LINE L2 -4 3268 3189 275 269 115 8 chr21 12998069 12998199 -21909371 - MLT1J LTR MaLR -41 470 327 2208 82 3 38 chr21 12998572 12998891 -21908679 - AluSg SINE Alu 0 310 3 2022 140 0 0 chr21 13000124 13000431 -21907139 - AluSx SINE Alu -5 307 1 276 206 73 0 chr21 13000731 13000799 -21906771 - MLT1J LTR MaLR -290 221 149 242 315 55 0 chr21 13001854 13001927 -21905643 + MIR SINE MIR 183 259 -3 21 0 0 0 chr21 13002606 13002627 -21904943 + AT_rich Low_complexity Low_complexity 1 21 0 2083 106 0 3 chr21 13003021 13003332 -21904238 - AluSx SINE Alu 0 310 1 728 199 0 0 chr21 13003332 13003473 -21904097 + L1PB4 LINE L1 6015 6155 -1 2225 186 60 17 chr21 13003508 13003987 -21903583 + MLT1D LTR MaLR 1 500 -5 1666 285 66 54 chr21 13004194 13005224 -21902346 - L2 LINE L2 -3 3310 2238 22 56 0 0 chr21 13005405 13005441 -21902129 + AT_rich Low_complexity Low_complexity 1 36 0 6397 37 0 1 chr21 13005838 13006600 -21900970 - L1PA5 LINE L1 -1 6153 5393 24 0 0 0 chr21 13007018 13007042 -21900528 + AT_rich Low_complexity Low_complexity 1 24 0 828 208 0 31 chr21 13008085 13008244 -21899326 - FRAM SINE Alu -10 156 3 23 33 0 0 chr21 13008248 13008278 -21899292 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr21 13010466 13010502 -21897068 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr21 13011341 13011370 -21896200 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr21 13011532 13011568 -21896002 + AT_rich Low_complexity Low_complexity 1 36 0 2172 115 0 7 chr21 13011845 13012166 -21895404 + AluSx SINE Alu 1 312 0 2044 139 0 10 chr21 13012839 13013148 -21894422 + AluSq SINE Alu 1 306 -7 2241 99 0 7 chr21 13014473 13014777 -21892793 - AluSc SINE Alu -7 302 1 254 243 27 0 chr21 13015063 13015137 -21892433 + (TA)n Simple_repeat Simple_repeat 1 76 0 1364 228 90 6 chr21 13015137 13015470 -21892100 - MLT1A1 LTR MaLR -4 361 1 180 0 0 0 chr21 13015513 13015533 -21892037 + (TA)n Simple_repeat Simple_repeat 2 21 0 744 278 90 3 chr21 13015946 13016245 -21891325 - L1ME3A LINE L1 -221 5949 5625 231 163 20 0 chr21 13016686 13016735 -21890835 - L1PA8A LINE L1 -559 5572 5523 304 296 143 9 chr21 13016740 13016970 -21890600 - L1ME3A LINE L1 -2524 5518 5258 261 256 131 31 chr21 13017143 13017303 -21890267 - L1ME3A LINE L1 -1076 5070 4895 305 21 21 21 chr21 13017537 13017584 -21889986 + MADE1 DNA Mariner 34 80 0 1429 168 18 46 chr21 13017783 13018068 -21889502 + AluJo SINE Alu 6 282 -30 1213 270 70 40 chr21 13018245 13018871 -21888699 - L1ME3A LINE L1 -72 6893 6247 320 264 66 0 chr21 13018916 13019022 -21888548 - L1ME3A LINE L1 -721 6244 6132 455 240 74 39 chr21 13019201 13019346 -21888224 - L1ME3A LINE L1 -3551 3390 3233 590 202 0 8 chr21 13019346 13019470 -21888100 - L1PB4 LINE L1 0 6156 6034 455 240 74 39 chr21 13019470 13019553 -21888017 - L1ME3A LINE L1 -3708 3233 3154 201 231 39 0 chr21 13019602 13019680 -21887890 + (TTAA)n Simple_repeat Simple_repeat 1 81 0 291 313 19 35 chr21 13019959 13020218 -21887352 - L1ME3A LINE L1 -4703 2419 2165 235 248 40 20 chr21 13020575 13020676 -21886894 - L1ME3A LINE L1 -4940 1483 1381 1861 123 0 44 chr21 13021081 13021398 -21886172 - AluSq SINE Alu -9 304 2 344 327 56 44 chr21 13021424 13021763 -21885807 - L1M4 LINE L1 -1823 4323 3981 337 322 74 17 chr21 13021794 13022024 -21885546 - L1M4 LINE L1 -2233 3913 3671 425 256 103 30 chr21 13022546 13022749 -21884821 - L1ME2 LINE L1 -281 5883 5666 1165 229 61 6 chr21 13022750 13023077 -21884493 - L1ME2 LINE L1 -554 5610 5266 372 43 0 0 chr21 13023147 13023193 -21884377 + (TG)n Simple_repeat Simple_repeat 2 47 0 396 316 99 9 chr21 13023351 13023563 -21884007 - L1ME LINE L1 -4998 1072 842 408 203 106 43 chr21 13023564 13023771 -21883799 - L1ME LINE L1 -5247 823 604 223 157 29 0 chr21 13023813 13023883 -21883687 + (TA)n Simple_repeat Simple_repeat 2 73 0 1027 164 26 72 chr21 13024429 13024699 -21882871 - L1MB2 LINE L1 0 6171 5914 5903 226 18 24 chr21 13024758 13027123 -21880447 - L1MC1 LINE L1 0 6333 3985 2393 97 39 0 chr21 13027123 13027483 -21880087 - L1MA1 LINE L1 0 6302 5929 5903 226 18 24 chr21 13027483 13027852 -21879718 - L1MC1 LINE L1 -2348 3985 3615 800 165 8 0 chr21 13027852 13027979 -21879591 - MER70A LTR ERVL 0 472 345 1845 138 10 0 chr21 13028343 13028806 -21878764 + AluSx SINE Alu 1 466 0 2168 110 3 0 chr21 13029124 13029423 -21878147 - AluSp SINE Alu -13 300 1 24 32 0 0 chr21 13031090 13031121 -21876449 + AT_rich Low_complexity Low_complexity 1 31 0 564 154 130 0 chr21 13031484 13031607 -21875963 - L1MA10 LINE L1 0 6334 6196 38 51 0 0 chr21 13032351 13032410 -21875160 + AT_rich Low_complexity Low_complexity 1 59 0 303 276 41 20 chr21 13033139 13033237 -21874333 - MER5B DNA MER1_type -77 101 2 219 36 0 0 chr21 13033388 13033416 -21874154 + (TG)n Simple_repeat Simple_repeat 2 29 0 455 282 55 111 chr21 13034435 13034742 -21872828 - L2 LINE L2 0 3313 3027 2092 107 3 21 chr21 13034742 13035033 -21872537 + AluSp SINE Alu 7 292 -21 455 282 55 111 chr21 13035033 13035086 -21872484 - L2 LINE L2 -286 3027 2973 774 189 170 0 chr21 13035086 13035245 -21872325 + L1PA16 LINE L1 5972 6157 -9 191 399 63 13 chr21 13035280 13035438 -21872132 + L2 LINE L2 2917 3082 -190 1599 234 52 30 chr21 13035924 13036365 -21871205 - MLT1D LTR MaLR -51 454 4 778 257 16 11 chr21 13036990 13037173 -21870397 - MER5A DNA MER1_type -5 184 1 1031 274 32 7 chr21 13038691 13038976 -21868594 - MLT2E LTR ERVL -335 293 2 216 67 0 0 chr21 13039102 13039132 -21868438 + (TA)n Simple_repeat Simple_repeat 1 30 0 217 298 15 30 chr21 13039140 13039271 -21868299 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 2307 94 0 0 chr21 13039856 13040165 -21867405 + AluY SINE Alu 1 309 -2 1131 108 25 0 chr21 13040165 13040322 -21867248 - THE1C LTR MaLR -214 161 1 1277 227 56 63 chr21 13041922 13042336 -21865234 + L1M4 LINE L1 13 423 -6119 1213 226 33 60 chr21 13042337 13042767 -21864803 + LTR52 LTR ERVL 2 419 -2 1794 238 11 24 chr21 13042773 13043045 -21864525 + LTR52-int LTR ERVL 8 351 -3205 1622 129 4 19 chr21 13043045 13043301 -21864269 - AluSc SINE Alu -13 296 45 1794 238 11 24 chr21 13043301 13043478 -21864092 + LTR52-int LTR ERVL 351 529 -3027 554 189 49 49 chr21 13043649 13043813 -21863757 + LTR52-int LTR ERVL 810 973 -2583 331 292 10 0 chr21 13043813 13043909 -21863661 + GA-rich Low_complexity Low_complexity 2 98 0 3627 242 38 15 chr21 13043990 13044927 -21862643 + LTR52-int LTR ERVL 1131 2089 -3596 3293 238 52 57 chr21 13045074 13045375 -21862195 + LTR52-int LTR ERVL 2099 2400 -3285 2195 103 3 0 chr21 13045375 13045677 -21861893 + AluSg SINE Alu 1 303 -7 3293 238 52 57 chr21 13045677 13046400 -21861170 + LTR52-int LTR ERVL 2400 3118 -2567 23 0 0 0 chr21 13046540 13046563 -21861007 + AT_rich Low_complexity Low_complexity 1 23 0 189 171 0 0 chr21 13047423 13047458 -21860112 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 1950 131 0 64 chr21 13048420 13048780 -21858790 + MER1B DNA MER1_type 1 337 0 1368 165 27 108 chr21 13048848 13049174 -21858396 + MLT1A2 LTR MaLR 4 297 -68 1803 68 0 4 chr21 13049174 13049442 -21858128 + L1PA7 LINE L1 5901 6167 0 1368 165 27 108 chr21 13049442 13049496 -21858074 + MLT1A2 LTR MaLR 297 354 -11 1132 242 74 84 chr21 13050028 13050527 -21857043 + MLT1D LTR MaLR 2 495 -10 569 245 77 81 chr21 13051173 13051434 -21856136 - MIR SINE MIR -1 261 2 33 80 0 0 chr21 13051830 13051905 -21855665 + AT_rich Low_complexity Low_complexity 1 75 0 1075 212 5 5 chr21 13053790 13054007 -21853563 + MER20 DNA MER1_type 1 217 -2 821 83 0 0 chr21 13054045 13054154 -21853416 - L1PA13 LINE L1 -251 5912 5804 28 29 0 0 chr21 13056859 13056894 -21850676 + AT_rich Low_complexity Low_complexity 1 35 0 210 208 0 0 chr21 13057182 13057230 -21850340 + (TG)n Simple_repeat Simple_repeat 1 48 0 260 188 0 0 chr21 13058207 13058255 -21849315 + (TG)n Simple_repeat Simple_repeat 1 48 0 457 231 26 51 chr21 13058485 13058641 -21848929 - MER119 DNA MER1_type 0 583 432 1961 88 0 15 chr21 13059310 13059572 -21847998 + AluY SINE Alu 43 300 -11 26 0 0 0 chr21 13060284 13060310 -21847260 + AT_rich Low_complexity Low_complexity 1 26 0 1316 159 68 9 chr21 13061698 13062121 -21845449 - L1MA9 LINE L1 -2 6310 5780 251 95 0 0 chr21 13062134 13062176 -21845394 + MADE1 DNA Mariner 1 42 -38 212 196 0 18 chr21 13062177 13062233 -21845337 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 421 160 107 0 chr21 13062233 13062308 -21845262 - L1MA9 LINE L1 -519 5793 5711 295 287 82 16 chr21 13062881 13063003 -21844567 + MIR SINE MIR 20 149 -113 556 184 44 132 chr21 13063632 13063858 -21843712 + MLT2D LTR ERVL 238 409 -5 1505 260 35 20 chr21 13064094 13064551 -21843019 + MLT1C LTR MaLR 1 464 -3 22 35 0 0 chr21 13064653 13064682 -21842888 + AT_rich Low_complexity Low_complexity 1 29 0 790 133 0 16 chr21 13064865 13064993 -21842577 + L1PA15 LINE L1 6034 6159 -6 418 264 111 0 chr21 13065333 13065477 -21842093 + L2 LINE L2 2444 2603 -711 350 180 0 0 chr21 13065479 13065540 -21842030 + MLT1C LTR MaLR 390 450 -17 921 251 50 0 chr21 13066339 13066618 -21840952 + L1MA4 LINE L1 6005 6297 -3 2446 47 7 3 chr21 13066847 13067144 -21840426 - AluY SINE Alu -13 298 1 510 43 0 149 chr21 13067255 13067308 -21840262 - MADE1 DNA Mariner 0 80 45 2257 84 10 0 chr21 13067308 13067604 -21839966 + AluY SINE Alu 1 299 -12 510 43 0 149 chr21 13067604 13067644 -21839926 - MADE1 DNA Mariner -35 45 1 32 0 0 0 chr21 13067790 13067822 -21839748 + AT_rich Low_complexity Low_complexity 1 32 0 1448 196 23 40 chr21 13067822 13068123 -21839447 - AluJo SINE Alu -16 296 1 4954 150 14 4 chr21 13068155 13068968 -21838602 - L1PA16 LINE L1 -9 6157 5337 2160 198 48 54 chr21 13068970 13069080 -21838490 + L1MA9 LINE L1 5635 5744 -568 2246 102 3 3 chr21 13069080 13069385 -21838185 + AluSx SINE Alu 1 305 -7 2160 198 48 54 chr21 13069385 13069429 -21838141 + L1MA9 LINE L1 5744 5787 -525 348 24 0 0 chr21 13069429 13069470 -21838100 + (TG)n Simple_repeat Simple_repeat 1 41 0 2160 198 48 54 chr21 13069470 13069957 -21837613 + L1MA9 LINE L1 5787 6273 -39 250 260 10 10 chr21 13070044 13070144 -21837426 + L1MEd LINE L1 1054 1153 -5052 1127 202 18 101 chr21 13070146 13070472 -21837098 + AluSx SINE Alu 1 299 -3 245 128 0 0 chr21 13070719 13070766 -21836804 + L1MEd LINE L1 1421 1467 -4929 3997 106 73 2 chr21 13070789 13071403 -21836167 - LTR12 LTR ERV1 0 671 14 711 217 23 60 chr21 13071513 13071812 -21835758 - pTR5 LTR ERV1 -1410 1028 741 1672 198 83 95 chr21 13072378 13073000 -21834570 - LTR9B LTR ERV1 0 644 29 2635 48 0 0 chr21 13073000 13073311 -21834259 - AluY SINE Alu 0 311 1 1672 198 83 95 chr21 13073311 13073340 -21834230 - LTR9B LTR ERV1 -615 29 1 22 0 0 0 chr21 13073591 13073613 -21833957 + AT_rich Low_complexity Low_complexity 1 22 0 1203 264 77 19 chr21 13073614 13073978 -21833592 - L1MC4a LINE L1 -1 7807 7423 336 310 18 18 chr21 13075650 13075763 -21831807 + MIR SINE MIR 81 193 -69 1873 201 71 13 chr21 13075827 13076221 -21831349 + MER47B DNA MER2_type 1 417 -1 513 263 97 17 chr21 13076682 13076857 -21830713 + L2 LINE L2 2618 2806 -508 21 0 0 0 chr21 13076893 13076914 -21830656 + AT_rich Low_complexity Low_complexity 1 21 0 3888 103 19 7 chr21 13076915 13077275 -21830295 - L1PB1 LINE L1 -1 6150 5779 468 0 0 0 chr21 13077275 13077327 -21830243 + (TA)n Simple_repeat Simple_repeat 2 53 0 3888 103 19 7 chr21 13077327 13077559 -21830011 - L1PB1 LINE L1 -372 5779 5551 4617 124 11 81 chr21 13077597 13078437 -21829133 - LTR25 LTR ERV1 -13 781 1 4979 187 33 3 chr21 13078437 13079560 -21828010 - L1PB1 LINE L1 -588 5563 4394 216 0 0 0 chr21 13079560 13079584 -21827986 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 4979 187 33 3 chr21 13079584 13079803 -21827767 - L1PB1 LINE L1 -1757 4394 4183 2109 117 13 0 chr21 13080302 13080601 -21826969 - AluSg SINE Alu -7 303 1 319 200 0 0 chr21 13082428 13082483 -21825087 + LTR40b LTR ERVL 408 462 0 457 275 66 11 chr21 13082498 13082680 -21824890 + HERVL40 LTR ERVL 19 210 -5320 4439 27 2 0 chr21 13082848 13083368 -21824202 + L1PA3 LINE L1 5632 6152 -3 989 314 61 34 chr21 13083638 13084145 -21823425 + HERVL40 LTR ERVL 564 1084 -4446 2775 20 0 0 chr21 13085853 13086158 -21821412 - AluY SINE Alu -6 305 1 671 307 66 23 chr21 13086914 13087041 -21820529 + MLT1G LTR MaLR 1 121 -469 1450 205 33 46 chr21 13087041 13087436 -21820134 - MLT1B LTR MaLR 0 390 1 671 307 66 23 chr21 13087436 13087565 -21820005 + MLT1G LTR MaLR 121 268 -322 21 0 0 0 chr21 13087998 13088019 -21819551 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr21 13088273 13088302 -21819268 + AT_rich Low_complexity Low_complexity 1 29 0 2074 134 0 6 chr21 13088306 13088619 -21818951 + AluSx SINE Alu 1 311 -1 252 157 0 0 chr21 13089817 13089868 -21817702 + Alu SINE Alu 251 301 -1 26 30 0 0 chr21 13089980 13090013 -21817557 + AT_rich Low_complexity Low_complexity 1 33 0 1851 176 3 3 chr21 13090192 13090494 -21817076 - AluJb SINE Alu -10 302 1 288 204 10 20 chr21 13090775 13090873 -21816697 + (TA)n Simple_repeat Simple_repeat 1 97 0 2636 87 26 3 chr21 13091882 13092262 -21815308 + L1PA13 LINE L1 5770 6158 -5 27 0 0 0 chr21 13093962 13093989 -21813581 + AT_rich Low_complexity Low_complexity 1 27 0 1629 236 17 6 chr21 13094060 13094421 -21813149 + MLT1A1 LTR MaLR 1 365 0 195 69 0 0 chr21 13094611 13094640 -21812930 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr21 13094768 13094798 -21812772 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 13095339 13095365 -21812205 + AT_rich Low_complexity Low_complexity 1 26 0 930 314 55 39 chr21 13096480 13096865 -21810705 + LTR16A LTR ERVL 60 450 0 252 402 0 8 chr21 13097120 13097247 -21810323 + MER5B DNA MER1_type 35 160 -18 1239 123 27 27 chr21 13097526 13097745 -21809825 - L1PA13 LINE L1 -2 6161 5943 1775 284 60 8 chr21 13097771 13098288 -21809282 - REP3 LTR ERV 0 562 19 2960 180 20 5 chr21 13098811 13099395 -21808175 + L1MA9 LINE L1 5720 6312 0 443 295 29 7 chr21 13099866 13100005 -21807565 + L1MC5 LINE L1 7785 7926 -35 51 92 0 0 chr21 13100486 13100628 -21806942 + AT_rich Low_complexity Low_complexity 1 142 0 529 174 11 0 chr21 13101383 13101475 -21806095 - Tigger5 DNA MER2_type 0 2323 2231 381 277 11 0 chr21 13101853 13101947 -21805623 - LTR40b LTR ERVL 0 462 368 530 314 76 22 chr21 13101951 13102321 -21805249 - LTR40a LTR ERVL -122 397 8 39 106 0 0 chr21 13102769 13102920 -21804650 + AT_rich Low_complexity Low_complexity 1 151 0 5359 167 27 11 chr21 13103148 13104614 -21802956 - L1PA16 LINE L1 -11 6155 4663 5528 225 14 4 chr21 13104608 13105946 -21801624 - L1 LINE L1 -1512 4634 3283 338 307 68 6 chr21 13106366 13106542 -21801028 - Charlie7 DNA MER1_type -689 1923 1737 1269 145 127 11 chr21 13106832 13107115 -21800455 - L1MA3 LINE L1 0 6305 5990 442 312 62 17 chr21 13107180 13107420 -21800150 - Charlie7 DNA MER1_type -2303 309 59 308 235 101 17 chr21 13108669 13108788 -21798782 - L1ME3A LINE L1 -7 6163 6035 1244 187 102 60 chr21 13108803 13109135 -21798435 - MLT1A1 LTR MaLR -19 346 1 740 304 39 27 chr21 13109329 13109664 -21797906 - L1ME3A LINE L1 -328 5842 5504 286 315 33 6 chr21 13109668 13109849 -21797721 + L1ME LINE L1 726 911 -5159 2056 140 7 0 chr21 13109884 13110192 -21797378 - AluSx SINE Alu 0 312 3 230 286 14 0 chr21 13110206 13110276 -21797294 + L1ME LINE L1 906 976 -5104 680 284 84 71 chr21 13110445 13110825 -21796745 + L1ME LINE L1 1081 1465 -4615 748 150 0 0 chr21 13110827 13110940 -21796630 + AluSq/x SINE Alu 1 113 -200 27 0 0 0 chr21 13110953 13110980 -21796590 + AT_rich Low_complexity Low_complexity 1 27 0 539 121 10 0 chr21 13110983 13111082 -21796488 + (TA)n Simple_repeat Simple_repeat 1 100 0 1823 134 0 4 chr21 13111235 13111504 -21796066 - AluSx SINE Alu -44 268 1 22 88 0 0 chr21 13111965 13112022 -21795548 + AT_rich Low_complexity Low_complexity 1 57 0 27 62 0 0 chr21 13113565 13113613 -21793957 + AT_rich Low_complexity Low_complexity 1 48 0 2202 101 7 0 chr21 13113841 13114137 -21793433 + AluSp SINE Alu 1 298 -15 27 29 0 0 chr21 13114623 13114657 -21792913 + AT_rich Low_complexity Low_complexity 1 34 0 1960 129 29 40 chr21 13114727 13115106 -21792464 + THE1C LTR MaLR 1 375 0 1878 164 21 9 chr21 13115400 13115730 -21791840 + MER47A DNA MER2_type 33 366 0 2731 102 0 0 chr21 13116271 13116635 -21790935 - THE1B LTR MaLR 0 364 1 330 255 106 0 chr21 13117581 13117675 -21789895 + L1MC4 LINE L1 7935 8038 -4 22 35 0 0 chr21 13117723 13117752 -21789818 + AT_rich Low_complexity Low_complexity 1 29 0 1711 153 68 34 chr21 13118722 13119107 -21788463 - L1MA8 LINE L1 0 6291 5894 38 39 0 0 chr21 13119694 13119746 -21787824 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr21 13120013 13120035 -21787535 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 13120759 13120783 -21786787 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr21 13120905 13120940 -21786630 + AT_rich Low_complexity Low_complexity 1 35 0 276 100 0 0 chr21 13121064 13121104 -21786466 + (TA)n Simple_repeat Simple_repeat 2 41 0 530 256 20 98 chr21 13121575 13121778 -21785792 - MER5A DNA MER1_type -1 188 2 663 188 80 17 chr21 13122388 13122564 -21785006 - MER53 DNA DNA -1 188 2 2101 139 7 0 chr21 13122848 13123158 -21784412 + AluSx SINE Alu 1 312 0 1590 190 22 25 chr21 13123406 13123770 -21783800 - MLT1A1 LTR MaLR 0 365 3 30 0 0 0 chr21 13124484 13124514 -21783056 + AT_rich Low_complexity Low_complexity 1 30 0 3734 69 4 0 chr21 13124514 13125004 -21782566 - L1PA7 LINE L1 -3 6151 5660 1883 155 7 3 chr21 13125009 13125293 -21782277 - AluSx SINE Alu -27 285 1 24 19 9 0 chr21 13125346 13125423 -21782147 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr21 13125582 13125603 -21781967 + AT_rich Low_complexity Low_complexity 1 21 0 24 91 0 0 chr21 13125773 13125839 -21781731 + AT_rich Low_complexity Low_complexity 1 66 0 222 376 21 0 chr21 13126240 13126333 -21781237 - L2 LINE L2 -3 3310 3216 1965 160 0 0 chr21 13126518 13126825 -21780745 + AluSq SINE Alu 1 307 -6 309 356 67 0 chr21 13127026 13127175 -21780395 - L2 LINE L2 -602 2712 2554 1173 237 39 0 chr21 13127491 13127748 -21779822 - MLT1A1 LTR MaLR 0 365 99 21 36 0 0 chr21 13128310 13128338 -21779232 + AT_rich Low_complexity Low_complexity 1 28 0 189 236 169 22 chr21 13128725 13128814 -21778756 + MER5A DNA MER1_type 10 111 -78 25 0 0 0 chr21 13128952 13128977 -21778593 + AT_rich Low_complexity Low_complexity 1 25 0 236 318 111 24 chr21 13129718 13129844 -21777726 + MIR SINE MIR 5 141 -121 259 191 29 29 chr21 13129927 13129995 -21777575 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 870 165 89 18 chr21 13130200 13130384 -21777186 - THE1C LTR MaLR 0 375 177 915 198 6 31 chr21 13130376 13130634 -21776936 - THE1C LTR MaLR -116 248 1 24 0 0 0 chr21 13131737 13131761 -21775809 + AT_rich Low_complexity Low_complexity 1 24 0 1882 201 11 6 chr21 13132547 13132910 -21774660 + MLT1A1 LTR MaLR 1 365 0 382 39 19 0 chr21 13133177 13133229 -21774341 - MADE1 DNA Mariner 0 80 28 1162 146 68 0 chr21 13135806 13136025 -21771545 + L1MA9 LINE L1 6073 6306 -6 55 76 0 0 chr21 13136290 13136408 -21771162 + AT_rich Low_complexity Low_complexity 1 118 0 883 87 0 36 chr21 13136943 13137081 -21770489 + FLAM_C SINE Alu 1 133 0 1613 214 25 17 chr21 13137115 13137475 -21770095 + MLT2B1 LTR ERVL 158 520 0 31 0 0 0 chr21 13137764 13137795 -21769775 + AT_rich Low_complexity Low_complexity 1 31 0 199 321 19 0 chr21 13138211 13138264 -21769306 + MIR SINE MIR 36 89 -119 25 31 0 0 chr21 13138310 13138342 -21769228 + AT_rich Low_complexity Low_complexity 1 32 0 942 104 7 0 chr21 13138347 13138491 -21769079 + AluSc SINE Alu 160 304 -5 180 0 0 0 chr21 13138494 13138514 -21769056 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 2829 24 0 3 chr21 13139430 13139768 -21767802 + L1PA2 LINE L1 5819 6155 0 2019 128 3 6 chr21 13140117 13140430 -21767140 + AluSx SINE Alu 1 312 0 1244 167 48 0 chr21 13141342 13141594 -21765976 - L1MA4A LINE L1 -12 6291 6028 1679 153 58 46 chr21 13141742 13142088 -21765482 + MLT2C1 LTR ERVL 6 355 -42 1554 78 10 0 chr21 13144126 13144332 -21763238 - L1PA11 LINE L1 -300 5874 5667 2076 78 27 7 chr21 13144332 13144625 -21762945 + L1PA11 LINE L1 5873 6172 -2 2132 237 64 42 chr21 13145005 13145772 -21761798 - L1ME1 LINE L1 0 6166 5383 6757 75 9 4 chr21 13145768 13146116 -21761454 - L1PA7 LINE L1 0 6154 4803 30335 98 14 10 chr21 13146116 13150062 -21757508 - L1P3 LINE L1 -351 5803 1839 2011 138 3 3 chr21 13150062 13150352 -21757218 + AluSc SINE Alu 1 290 -19 30335 98 14 10 chr21 13150352 13151403 -21756167 - L1P3 LINE L1 -4315 1839 793 3770 187 19 17 chr21 13151555 13152380 -21755190 + L1MA8 LINE L1 5461 6287 -4 866 259 75 34 chr21 13152531 13153157 -21754413 - L1MCb LINE L1 -4090 2518 1884 189 74 0 0 chr21 13153179 13153206 -21754364 + (TG)n Simple_repeat Simple_repeat 2 28 0 225 151 27 41 chr21 13153262 13153335 -21754235 + (TA)n Simple_repeat Simple_repeat 1 72 0 192 105 0 53 chr21 13153354 13153411 -21754159 + (TA)n Simple_repeat Simple_repeat 2 55 0 2133 239 37 29 chr21 13153423 13154456 -21753114 - L1MCb LINE L1 -4848 1197 618 569 308 23 3 chr21 13154495 13154794 -21752776 - L1MEc LINE L1 -2875 3340 3036 525 25 38 13 chr21 13154800 13154879 -21752691 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 4539 102 25 9 chr21 13154879 13155550 -21752020 - L1PA11 LINE L1 -7 6167 5483 523 235 68 31 chr21 13155588 13155750 -21751820 - L1MEc LINE L1 -3245 2970 2803 256 232 98 27 chr21 13155829 13155941 -21751629 - L1MEc LINE L1 -5267 1129 1010 1900 284 52 17 chr21 13155955 13156850 -21750720 - L1MEc LINE L1 -5431 965 35 23 0 0 0 chr21 13157413 13157436 -21750134 + AT_rich Low_complexity Low_complexity 1 23 0 2283 158 62 2 chr21 13158010 13158414 -21749156 + MSTA LTR MaLR 1 428 0 8642 187 28 7 chr21 13158415 13160031 -21747539 + MSTA-int LTR MaLR 2 1651 0 2444 137 70 5 chr21 13160031 13160433 -21747137 + MSTA LTR MaLR 1 428 0 536 281 80 12 chr21 13161399 13161648 -21745922 + L2 LINE L2 1830 2095 -1219 195 42 0 0 chr21 13161688 13161712 -21745858 + (TC)n Simple_repeat Simple_repeat 1 24 0 477 144 89 0 chr21 13162218 13162308 -21745262 + MER4A LTR ERV1 1 98 -566 857 148 4 112 chr21 13162308 13162545 -21745025 + MER4A LTR ERV1 261 530 -134 566 143 0 0 chr21 13162640 13162724 -21744846 + MER4A LTR ERV1 581 664 0 2203 122 0 0 chr21 13163811 13164115 -21743455 - AluSg SINE Alu -6 304 1 36 0 0 0 chr21 13164286 13164322 -21743248 + AT_rich Low_complexity Low_complexity 1 36 0 44 70 0 0 chr21 13164454 13164540 -21743030 + AT_rich Low_complexity Low_complexity 1 86 0 2883 151 48 58 chr21 13164602 13165206 -21742364 + MER7C DNA MER2_type 1 598 -4 2030 104 11 0 chr21 13165538 13165807 -21741763 + AluSg SINE Alu 24 295 -15 1626 182 4 4 chr21 13166251 13166515 -21741055 - AluJo SINE Alu -45 267 4 2055 127 30 0 chr21 13168223 13168523 -21739047 + AluSx SINE Alu 1 309 -3 1799 205 66 58 chr21 13168738 13168775 -21738795 - MLT2B1 LTR ERVL -3 517 482 207 69 0 0 chr21 13168775 13168804 -21738766 + (TA)n Simple_repeat Simple_repeat 1 29 0 1799 205 66 58 chr21 13168804 13169279 -21738291 - MLT2B1 LTR ERVL -38 482 1 286 267 93 0 chr21 13169530 13169616 -21737954 + L2 LINE L2 3179 3272 0 2545 68 0 0 chr21 13171690 13171999 -21735571 - AluY SINE Alu -2 309 1 22 0 0 0 chr21 13172170 13172192 -21735378 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 13172310 13172334 -21735236 + AT_rich Low_complexity Low_complexity 1 24 0 318 151 14 58 chr21 13172593 13172732 -21734838 + (TTAA)n Simple_repeat Simple_repeat 3 135 0 1556 237 102 18 chr21 13172762 13173273 -21734297 - MER74A LTR ERVL 0 558 5 1426 102 0 0 chr21 13174591 13174778 -21732792 - AluSg/x SINE Alu -1 309 123 3346 136 17 11 chr21 13174908 13175432 -21732138 - MER1A DNA MER1_type 0 527 1 1530 198 17 0 chr21 13175494 13175787 -21731783 - AluJo SINE Alu -14 298 1 5244 156 33 9 chr21 13175840 13176769 -21730801 + L1MC1 LINE L1 5377 6328 -5 2242 113 3 3 chr21 13176771 13177081 -21730489 + AluSq SINE Alu 1 310 -3 341 312 63 90 chr21 13177368 13177459 -21730111 - L1ME3A LINE L1 -304 5866 5774 2137 119 10 7 chr21 13177459 13177762 -21729808 - AluSx SINE Alu -7 305 2 341 312 63 90 chr21 13177762 13178008 -21729562 - L1ME3A LINE L1 -396 5774 5538 556 39 39 0 chr21 13178008 13178085 -21729485 + MADE1 DNA Mariner 1 80 0 341 312 63 90 chr21 13178085 13178124 -21729446 - L1ME3A LINE L1 -632 5538 5499 954 170 0 0 chr21 13178185 13178332 -21729238 + FRAM SINE Alu 3 149 -27 321 271 96 108 chr21 13178615 13179191 -21728379 - L1ME3A LINE L1 -1049 5097 4529 594 273 101 40 chr21 13179581 13179878 -21727692 - MLT1H LTR MaLR -224 325 11 2016 135 3 7 chr21 13180128 13180432 -21727138 - AluSx SINE Alu -9 303 1 988 185 0 0 chr21 13181443 13181605 -21725965 + FRAM SINE Alu 1 159 -17 1289 189 41 59 chr21 13182001 13182339 -21725231 - MLT2B3 LTR ERVL 0 554 223 1269 171 40 18 chr21 13182340 13182568 -21725002 - MSTA LTR MaLR -195 233 1 22 0 0 0 chr21 13183781 13183803 -21723767 + AT_rich Low_complexity Low_complexity 1 22 0 646 286 26 19 chr21 13185446 13185712 -21721858 - L1ME1 LINE L1 -115 6051 5784 1570 207 34 8 chr21 13185715 13186068 -21721502 - MLT1A1 LTR MaLR -3 362 1 2098 84 3 74 chr21 13186074 13186397 -21721173 + AluSg SINE Alu 1 300 -10 546 235 87 61 chr21 13186476 13186706 -21720864 + MER101B LTR ERV1 1 236 -334 1703 250 19 23 chr21 13186796 13187284 -21720286 + LTR51 LTR ERV1 222 923 0 311 256 62 39 chr21 13188117 13188246 -21719324 + MER34 LTR ERV1 121 252 -290 228 35 0 0 chr21 13188250 13188279 -21719291 + (TA)n Simple_repeat Simple_repeat 2 30 0 253 136 0 0 chr21 13188300 13188344 -21719226 + MER34 LTR ERV1 315 358 -184 427 322 67 10 chr21 13188384 13188592 -21718978 - L1MEc LINE L1 -5023 1519 1300 742 291 7 7 chr21 13188645 13188916 -21718654 - L1MEc LINE L1 -5456 1369 1099 722 284 49 86 chr21 13189107 13189455 -21718115 - L1MEc LINE L1 -6026 799 465 25 31 0 0 chr21 13189457 13189489 -21718081 + AT_rich Low_complexity Low_complexity 1 32 0 314 333 44 69 chr21 13189566 13189638 -21717932 + MIR SINE MIR 39 111 -151 2060 133 0 13 chr21 13189638 13189939 -21717631 + AluSx SINE Alu 14 310 -2 314 333 44 69 chr21 13189939 13190070 -21717500 + MIR SINE MIR 111 237 -25 2302 93 3 0 chr21 13190128 13190428 -21717142 + AluSp SINE Alu 1 301 -12 341 392 16 5 chr21 13190608 13190802 -21716768 - MIR SINE MIR -57 205 10 2342 90 3 0 chr21 13191423 13191722 -21715848 - AluSx SINE Alu -12 300 1 616 319 62 47 chr21 13192052 13192438 -21715132 + L2 LINE L2 2922 3313 0 1147 137 19 39 chr21 13193349 13193554 -21714016 - MSTA LTR MaLR -201 227 27 2392 138 36 17 chr21 13194130 13194522 -21713048 + MSTA LTR MaLR 1 403 -25 3634 112 22 9 chr21 13194522 13195076 -21712494 - L1PA10 LINE L1 0 6168 5608 2392 138 36 17 chr21 13195076 13195103 -21712467 + MSTA LTR MaLR 403 428 0 223 333 142 7 chr21 13195110 13195251 -21712319 - MIR SINE MIR -56 206 47 3249 268 26 18 chr21 13195284 13196443 -21711127 + L1M4 LINE L1 3202 4369 -1777 1508 243 19 21 chr21 13196466 13196985 -21710585 + L1M4 LINE L1 4432 4949 -1197 1360 197 0 14 chr21 13197055 13197345 -21710225 + L1MA10 LINE L1 6048 6333 -1 836 28 0 19 chr21 13197644 13197752 -21709818 - L1PA4 LINE L1 0 6155 6050 229 274 47 75 chr21 13198038 13198144 -21709426 - L2 LINE L2 -1 3271 3169 656 245 29 86 chr21 13198258 13198503 -21709067 + MIR SINE MIR 11 241 -21 1342 243 21 6 chr21 13199301 13199634 -21707936 - MER58B DNA MER1_type 0 341 4 186 205 0 0 chr21 13199993 13200032 -21707538 + MER5B DNA MER1_type 140 178 0 21 0 0 0 chr21 13200136 13200157 -21707413 + AT_rich Low_complexity Low_complexity 1 21 0 302 289 12 0 chr21 13200599 13200682 -21706888 - MER110 LTR ERV1 -2 489 406 288 120 0 0 chr21 13200682 13200732 -21706838 + (CA)n Simple_repeat Simple_repeat 2 51 0 551 268 7 7 chr21 13201034 13201176 -21706394 - MER110 LTR ERV1 -333 158 17 329 267 12 0 chr21 13201146 13201232 -21706338 - MER110 LTR ERV1 -404 87 1 2530 171 16 7 chr21 13201292 13201730 -21705840 - MSTB2 LTR MaLR -3 454 13 679 218 85 27 chr21 13202020 13202208 -21705362 + L1MB8 LINE L1 50 248 -6611 770 268 112 0 chr21 13202774 13203024 -21704546 + L1MB8 LINE L1 804 1081 -5778 1541 246 55 14 chr21 13203032 13203693 -21703877 + L1MB8 LINE L1 1122 1833 -5022 1115 255 35 88 chr21 13203706 13204299 -21703271 + L1MB8 LINE L1 2140 2701 -4437 229 208 0 168 chr21 13204463 13204514 -21703056 - MLT1E3 LTR MaLR -17 607 588 2342 88 0 0 chr21 13204514 13204808 -21702762 + AluY SINE Alu 1 294 -17 229 208 0 168 chr21 13204808 13204881 -21702689 - MLT1E3 LTR MaLR -36 588 504 29 60 0 0 chr21 13205257 13205307 -21702263 + AT_rich Low_complexity Low_complexity 1 50 0 2858 227 39 14 chr21 13205394 13205570 -21702000 + L1MB8 LINE L1 4529 4699 -2258 2227 117 0 0 chr21 13205570 13205869 -21701701 + AluSx SINE Alu 1 299 -13 2858 227 39 14 chr21 13205869 13206523 -21701047 + L1MB8 LINE L1 4699 5379 -1578 2986 225 52 36 chr21 13206947 13208360 -21699210 + L1MB8 LINE L1 5541 6980 -9 1011 175 45 132 chr21 13208369 13208724 -21698846 + MLT1D LTR MaLR 177 500 -5 885 266 22 52 chr21 13208738 13209141 -21698429 + MLT2C1 LTR ERVL 3 393 -4 1136 268 73 64 chr21 13209145 13209723 -21697847 - MER110-int LTR ERV1 -20 4627 4045 21 0 0 0 chr21 13210015 13210036 -21697534 + AT_rich Low_complexity Low_complexity 1 21 0 2340 211 100 8 chr21 13210144 13210783 -21696787 - Tigger7 DNA MER2_type -6 2581 10 946 110 21 63 chr21 13210794 13210985 -21696585 + L1MA8 LINE L1 6106 6288 -3 559 239 18 60 chr21 13211044 13211211 -21696359 - MER110-int LTR ERV1 -1017 3630 3471 4454 244 54 32 chr21 13211233 13212617 -21694953 - MER110-int LTR ERV1 -1520 3127 1714 341 205 13 26 chr21 13214885 13214963 -21692607 - MER110-int LTR ERV1 -4570 77 1 1630 251 59 14 chr21 13215010 13215449 -21692121 - MER110 LTR ERV1 -30 461 3 297 151 0 0 chr21 13216612 13216665 -21690905 + (CAT)n Simple_repeat Simple_repeat 1 53 0 2658 178 14 87 chr21 13216937 13217035 -21690535 - L1MC2 LINE L1 -9 6335 6231 2458 72 13 0 chr21 13217035 13217340 -21690230 - AluY SINE Alu 0 311 3 2658 178 14 87 chr21 13217340 13217908 -21689662 - L1MC2 LINE L1 -113 6231 5718 21 0 0 0 chr21 13219514 13219535 -21688035 + AT_rich Low_complexity Low_complexity 1 21 0 2276 94 3 0 chr21 13219556 13219853 -21687717 - AluSx SINE Alu -14 298 1 668 243 0 0 chr21 13220175 13220348 -21687222 + (GAGTG)n Simple_repeat Simple_repeat 5 177 0 373 209 74 43 chr21 13220639 13220824 -21686746 + MLT1H LTR MaLR 399 549 0 2103 86 48 0 chr21 13221536 13221826 -21685744 + AluSq SINE Alu 1 304 -9 22 70 0 0 chr21 13222091 13222134 -21685436 + AT_rich Low_complexity Low_complexity 1 43 0 203 281 0 0 chr21 13222138 13222152 -21685418 + A-rich Low_complexity Low_complexity 5 18 -50 1913 104 111 0 chr21 13222152 13222431 -21685139 + AluSg SINE Alu 1 310 0 203 281 0 0 chr21 13222431 13222480 -21685090 + A-rich Low_complexity Low_complexity 17 68 0 1502 138 4 8 chr21 13222674 13222914 -21684656 - LTR19C LTR ERV1 0 779 541 7451 186 8 10 chr21 13222916 13224232 -21683338 + HUERS-P3 LTR ERV1 5621 6934 -1985 2243 112 0 7 chr21 13225371 13225675 -21681895 + AluSg SINE Alu 4 305 -5 1014 211 18 86 chr21 13225979 13226259 -21681311 + HUERS-P3 LTR ERV1 8659 8919 0 4917 116 25 12 chr21 13226261 13226725 -21680845 + LTR19C LTR ERV1 1 480 -299 207 0 0 0 chr21 13226725 13226748 -21680822 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4917 116 25 12 chr21 13226748 13227052 -21680518 + LTR19C LTR ERV1 480 779 0 4175 49 11 2 chr21 13227421 13227947 -21679623 - L1PA6 LINE L1 -1 6153 5623 2244 60 0 11 chr21 13228333 13228656 -21678914 + AluY SINE Alu 1 320 0 22 35 0 0 chr21 13229075 13229104 -21678466 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 13229753 13229779 -21677791 + AT_rich Low_complexity Low_complexity 1 26 0 1032 183 21 5 chr21 13229925 13230111 -21677459 + L1PB3 LINE L1 5959 6147 -7 26 30 0 0 chr21 13230128 13230161 -21677409 + AT_rich Low_complexity Low_complexity 1 33 0 243 88 0 0 chr21 13230560 13230594 -21676976 + (T)n Simple_repeat Simple_repeat 1 34 0 206 224 41 92 chr21 13230606 13230704 -21676866 + L2 LINE L2 3136 3228 -44 296 351 9 18 chr21 13230899 13231010 -21676560 - L2 LINE L2 0 3313 3204 589 342 79 22 chr21 13231174 13231524 -21676046 - L2 LINE L2 -267 3046 2671 1981 143 30 46 chr21 13231524 13231894 -21675676 + THE1B LTR MaLR 1 364 0 589 342 79 22 chr21 13231894 13231933 -21675637 - L2 LINE L2 -642 2671 2636 455 92 15 0 chr21 13234149 13234214 -21673356 - THE1C LTR MaLR -2 373 308 1430 108 13 43 chr21 13235320 13235551 -21672019 + AluSx SINE Alu 1 224 -88 28 0 0 0 chr21 13235687 13235715 -21671855 + AT_rich Low_complexity Low_complexity 1 28 0 636 280 92 78 chr21 13235854 13236030 -21671540 - L2 LINE L2 0 3313 3141 1658 208 7 50 chr21 13236030 13236433 -21671137 + MLT1B LTR MaLR 5 390 0 636 280 92 78 chr21 13236433 13236828 -21670742 - L2 LINE L2 -172 3141 2731 1978 125 37 0 chr21 13237232 13237528 -21670042 - AluSx SINE Alu -5 307 1 490 234 21 35 chr21 13237932 13238077 -21669493 - LTR45 LTR ERV1 0 525 383 2360 109 0 0 chr21 13238111 13238423 -21669147 + AluSx SINE Alu 1 312 0 443 117 0 48 chr21 13238426 13238529 -21669041 + (GGGAA)n Simple_repeat Simple_repeat 4 101 0 2076 134 3 3 chr21 13238560 13238858 -21668712 + AluSp SINE Alu 3 300 -13 1667 121 99 13 chr21 13238858 13239175 -21668395 + MSTA LTR MaLR 67 428 0 5087 165 19 4 chr21 13239177 13240121 -21667449 + Tigger3b DNA MER2_type 244 1201 -30 2630 48 0 0 chr21 13240175 13240486 -21667084 + AluY SINE Alu 1 311 0 200 263 0 0 chr21 13241627 13241665 -21665905 + (CA)n Simple_repeat Simple_repeat 1 38 0 25 0 0 0 chr21 13241730 13241755 -21665815 + AT_rich Low_complexity Low_complexity 1 25 0 532 156 0 11 chr21 13242070 13242160 -21665410 - MLT1C LTR MaLR -8 459 371 944 158 63 109 chr21 13242324 13242609 -21664961 - MLT1C LTR MaLR -195 272 1 1292 205 11 11 chr21 13243364 13243637 -21663933 - L1MB5 LINE L1 -1 6173 5901 424 316 29 0 chr21 13243888 13244027 -21663543 - MIR SINE MIR -10 252 110 449 319 65 19 chr21 13244150 13244400 -21663170 + MLT1I LTR MaLR 58 286 -123 1992 152 44 64 chr21 13245135 13245589 -21661981 + MER65A LTR ERV1 1 445 0 2361 249 58 70 chr21 13245848 13246654 -21660916 - MER21B LTR ERV1 -48 815 19 325 240 0 62 chr21 13246676 13246772 -21660798 - MER21B LTR ERV1 -773 90 1 1377 79 0 6 chr21 13247440 13247618 -21659952 + AluY SINE Alu 84 260 -51 22 80 0 0 chr21 13247675 13247725 -21659845 + AT_rich Low_complexity Low_complexity 1 50 0 2972 138 11 40 chr21 13248048 13248575 -21658995 - MER41E LTR ERV1 0 512 1 533 306 47 21 chr21 13250963 13251324 -21656246 + L1ME LINE L1 1263 1603 -4939 229 285 34 68 chr21 13251350 13251613 -21655957 + L1ME LINE L1 1625 1878 -4766 2412 73 0 7 chr21 13251617 13251920 -21655650 + AluY SINE Alu 1 301 -10 2074 160 12 0 chr21 13252171 13252509 -21655061 + L1M2 LINE L1 1 342 -6507 2259 92 0 0 chr21 13252859 13253165 -21654405 - AluSp SINE Alu 0 308 3 201 74 0 0 chr21 13253512 13253539 -21654031 + (TAA)n Simple_repeat Simple_repeat 1 27 0 429 277 50 38 chr21 13253544 13253703 -21653867 - MIR SINE MIR -18 244 84 25 31 0 0 chr21 13254042 13254074 -21653496 + AT_rich Low_complexity Low_complexity 1 32 0 2234 189 53 14 chr21 13254151 13254644 -21652926 - MER50 LTR ERV1 -212 522 11 1762 148 43 57 chr21 13254750 13254986 -21652584 - L1MA4A LINE L1 -1 6302 6073 2166 88 28 0 chr21 13254986 13255271 -21652299 - AluY SINE Alu -18 293 1 1762 148 43 57 chr21 13255271 13255453 -21652117 - L1MA4A LINE L1 -230 6073 5890 1556 252 17 13 chr21 13255454 13256458 -21651112 - L1M2 LINE L1 -5583 1266 357 673 219 26 13 chr21 13256463 13256614 -21650956 - MLT1C LTR MaLR -2 465 313 11257 174 38 15 chr21 13256614 13257234 -21650336 + ERVL-D LTR ERVL 3343 3947 -1817 2746 22 0 3 chr21 13257234 13257546 -21650024 - AluY SINE Alu 0 311 1 11257 174 38 15 chr21 13257546 13258977 -21648593 + ERVL-D LTR ERVL 3947 5442 -322 249 196 0 0 chr21 13258990 13259041 -21648529 + (CA)n Simple_repeat Simple_repeat 2 52 0 1904 159 17 38 chr21 13259041 13259387 -21648183 + MER47A DNA MER2_type 1 339 -27 1519 136 19 57 chr21 13259391 13259708 -21647862 + ERVL-D LTR ERVL 5453 5757 -7 1822 193 14 19 chr21 13259708 13260076 -21647494 + MLT2D LTR ERVL 1 366 -48 236 109 22 22 chr21 13260117 13260163 -21647407 + MLT2D LTR ERVL 350 395 -2 734 198 85 49 chr21 13260165 13260300 -21647270 + L1ME2 LINE L1 5909 6059 -105 351 0 0 0 chr21 13260300 13260339 -21647231 + (TA)n Simple_repeat Simple_repeat 2 40 0 734 198 85 49 chr21 13260339 13260450 -21647120 + L1ME2 LINE L1 6059 6164 0 317 207 120 33 chr21 13260592 13260742 -21646828 + L1ME4a LINE L1 5954 6116 -5 1182 272 39 3 chr21 13260808 13261113 -21646457 - MLT1E2 LTR MaLR 0 626 311 24 53 0 0 chr21 13261203 13261241 -21646329 + AT_rich Low_complexity Low_complexity 1 38 0 592 115 19 0 chr21 13261249 13261353 -21646217 + CT-rich Low_complexity Low_complexity 3 108 0 606 306 41 15 chr21 13263266 13263537 -21644033 - MER110 LTR ERV1 -49 442 165 989 209 28 17 chr21 13264903 13265233 -21642337 + MSTD LTR MaLR 2 396 0 7624 25 0 0 chr21 13265410 13266742 -21640828 - L1PA3 LINE L1 -3 6152 4828 263 366 75 39 chr21 13267578 13267884 -21639686 - L3 LINE CR1 -2 1575 1259 21 0 0 0 chr21 13269398 13269419 -21638151 + AT_rich Low_complexity Low_complexity 1 21 0 350 315 74 20 chr21 13270683 13270832 -21636738 - MIR SINE MIR -56 206 50 338 159 14 0 chr21 13273520 13273589 -21633981 + CT-rich Low_complexity Low_complexity 1 70 0 1887 156 30 50 chr21 13274759 13275157 -21632413 - MLT1B LTR MaLR 0 390 1 30 27 0 0 chr21 13277772 13277809 -21629761 + AT_rich Low_complexity Low_complexity 1 37 0 341 244 90 0 chr21 13279201 13279279 -21628291 + L2 LINE L2 3187 3271 -1 31 0 0 0 chr21 13279324 13279355 -21628215 + AT_rich Low_complexity Low_complexity 1 31 0 335 280 0 30 chr21 13279914 13280014 -21627556 + L1MB1 LINE L1 2270 2366 -4018 981 280 34 3 chr21 13280023 13280380 -21627190 + L1MB1 LINE L1 2496 2863 -3519 1252 186 9 0 chr21 13280381 13280596 -21626974 + MER1B DNA MER1_type 1 217 -80 11018 200 28 15 chr21 13280691 13283078 -21624492 + L1MB1 LINE L1 2867 5315 -1089 2273 76 20 3 chr21 13283078 13283382 -21624188 + AluY SINE Alu 1 309 -2 11018 200 28 15 chr21 13283382 13284472 -21623098 + L1MB1 LINE L1 5315 6389 -15 2241 61 11 0 chr21 13284810 13285124 -21622446 - AluY SINE Alu 0 317 1 22 56 0 0 chr21 13286421 13286457 -21621113 + AT_rich Low_complexity Low_complexity 1 36 0 314 279 106 34 chr21 13287437 13287616 -21619954 - MIR SINE MIR -24 238 47 1963 121 0 54 chr21 13287665 13287979 -21619591 - AluSx SINE Alu -15 297 1 194 0 39 0 chr21 13288256 13288282 -21619288 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1084 166 14 93 chr21 13289075 13289364 -21618206 + THE1C LTR MaLR 72 337 -38 2228 97 0 13 chr21 13290194 13290493 -21617077 + AluSq SINE Alu 3 297 -16 22 35 0 0 chr21 13290987 13291016 -21616554 + AT_rich Low_complexity Low_complexity 1 29 0 740 267 79 38 chr21 13291233 13291710 -21615860 - LTR40a LTR ERVL -18 444 1 2137 122 0 0 chr21 13291996 13292290 -21615280 - AluSc SINE Alu -13 296 3 332 22 22 0 chr21 13292292 13292337 -21615233 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 1764 133 25 7 chr21 13292337 13292615 -21614955 - AluSq SINE Alu -30 283 1 270 0 0 0 chr21 13292623 13292653 -21614917 + (T)n Simple_repeat Simple_repeat 1 30 0 811 117 0 8 chr21 13294329 13294449 -21613121 - AluSg/x SINE Alu -18 292 174 324 0 0 0 chr21 13295118 13295154 -21612416 + (CA)n Simple_repeat Simple_repeat 1 36 0 1405 312 91 19 chr21 13296196 13297119 -21610451 + L2 LINE L2 763 1781 -1533 24 32 0 0 chr21 13297337 13297368 -21610202 + AT_rich Low_complexity Low_complexity 1 31 0 243 146 0 0 chr21 13298369 13298410 -21609160 + (TG)n Simple_repeat Simple_repeat 1 41 0 386 339 8 0 chr21 13298445 13298566 -21609004 + MIR SINE MIR 21 142 -120 590 249 17 44 chr21 13299754 13299935 -21607635 - L1ME2 LINE L1 -34 6130 5955 691 273 16 11 chr21 13299948 13300131 -21607439 - L1ME2 LINE L1 -264 5898 5715 1634 170 28 74 chr21 13300707 13301101 -21606469 + MLT1B LTR MaLR 1 376 -14 1371 167 174 9 chr21 13301110 13301427 -21606143 + MLT1B LTR MaLR 22 390 0 21 0 0 0 chr21 13301799 13301820 -21605750 + AT_rich Low_complexity Low_complexity 1 21 0 241 181 42 28 chr21 13302234 13302306 -21605264 + (CATATA)n Simple_repeat Simple_repeat 4 76 0 2237 109 6 3 chr21 13302712 13303023 -21604547 - AluSx SINE Alu 0 312 1 1000 208 60 5 chr21 13303512 13303791 -21603779 - MLT1A1 LTR MaLR 0 365 22 6582 196 19 6 chr21 13303791 13304992 -21602578 - MSTB-int LTR MaLR -434 1217 1 1893 190 47 38 chr21 13304992 13305414 -21602156 - MSTB LTR MaLR 0 426 1 5043 142 32 11 chr21 13306527 13307907 -21599663 + L1PA16 LINE L1 4762 6165 -1 1630 211 25 11 chr21 13308177 13308537 -21599033 - MLT1A1 LTR MaLR 0 365 1 1143 310 65 8 chr21 13310327 13310804 -21596766 - HERV16 LTR ERVL -4262 734 231 862 268 46 79 chr21 13311676 13312192 -21595378 - MER77 LTR ERV1 -23 582 214 2474 140 26 12 chr21 13312609 13313031 -21594539 - MSTA LTR MaLR 0 428 1 613 291 58 23 chr21 13313177 13313438 -21594132 + MER110 LTR ERV1 171 440 -51 1778 199 34 11 chr21 13313943 13314284 -21593286 - MLT1A1 LTR MaLR 0 365 14 646 128 28 0 chr21 13314284 13314393 -21593177 + L1MA3 LINE L1 6194 6305 0 1778 199 34 11 chr21 13314393 13314408 -21593162 - MLT1A1 LTR MaLR -351 14 1 477 199 45 39 chr21 13315089 13315245 -21592325 - HAL1 LINE L1 -335 2172 2016 600 262 124 87 chr21 13315431 13315518 -21592052 - HAL1 LINE L1 -631 1876 1794 2144 96 0 7 chr21 13315518 13315809 -21591761 - AluSg1 SINE Alu -20 289 1 600 262 124 87 chr21 13315809 13316076 -21591494 - HAL1 LINE L1 -713 1794 1509 2157 116 3 0 chr21 13317062 13317372 -21590198 + AluY SINE Alu 1 311 0 894 242 69 25 chr21 13317768 13318045 -21589525 + MLT1B LTR MaLR 102 390 0 222 291 25 25 chr21 13321329 13321408 -21586162 + MER5B DNA MER1_type 41 119 -59 358 235 0 0 chr21 13322105 13322186 -21585384 - MLT1D LTR MaLR 0 505 425 1428 262 80 59 chr21 13322187 13322232 -21585338 + L1MEc LINE L1 1026 1069 -5538 2480 121 6 3 chr21 13322232 13322595 -21584975 + THE1B LTR MaLR 1 364 0 1428 262 80 59 chr21 13322595 13323553 -21584017 + L1MEc LINE L1 1069 2239 -4368 494 212 8 59 chr21 13323560 13323678 -21583892 - MER52A LTR ERV1 -1588 167 56 433 261 42 6 chr21 13324167 13324332 -21583238 + L1MEc LINE L1 3747 3917 -2509 495 205 26 17 chr21 13324422 13324539 -21583031 + L1MC3 LINE L1 7652 7769 -16 878 286 82 60 chr21 13325120 13326326 -21581244 + L1ME LINE L1 397 1669 -4592 247 277 27 36 chr21 13326467 13326579 -21580991 + L1ME LINE L1 1852 1962 -4299 2468 112 43 0 chr21 13326582 13326931 -21580639 + THE1B LTR MaLR 1 364 0 2325 71 7 32 chr21 13327941 13328249 -21579321 - AluY SINE Alu -11 300 1 255 215 0 0 chr21 13328738 13328803 -21578767 + GA-rich Low_complexity Low_complexity 4 68 0 1338 218 30 27 chr21 13328865 13329196 -21578374 + LTR52 LTR ERVL 87 418 -3 2327 103 0 0 chr21 13329628 13329930 -21577640 - AluSx SINE Alu -10 302 1 26 0 0 0 chr21 13330278 13330304 -21577266 + AT_rich Low_complexity Low_complexity 1 26 0 454 312 7 22 chr21 13330451 13330589 -21576981 - L2 LINE L2 -1 3312 3177 22 35 0 0 chr21 13332265 13332294 -21575276 + AT_rich Low_complexity Low_complexity 1 29 0 837 119 0 182 chr21 13332295 13332531 -21575039 + 7SK RNA RNA 1 193 0 2310 102 7 0 chr21 13333233 13333538 -21574032 + AluSc SINE Alu 1 307 -2 1898 108 0 8 chr21 13334026 13334285 -21573285 - AluY SINE Alu -18 293 37 1648 198 69 3 chr21 13334545 13334879 -21572691 + MLT1A1 LTR MaLR 10 365 0 498 161 0 0 chr21 13335728 13335821 -21571749 + CT-rich Low_complexity Low_complexity 4 96 0 294 180 0 0 chr21 13335994 13336055 -21571515 + (CA)n Simple_repeat Simple_repeat 2 62 0 1292 228 54 68 chr21 13336707 13337075 -21570495 + MLT1A1 LTR MaLR 1 354 -11 26 50 0 0 chr21 13337722 13337762 -21569808 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr21 13338674 13338694 -21568876 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4087 129 4 68 chr21 13338870 13339608 -21567962 - LTR8 LTR ERV1 0 691 1 855 291 19 30 chr21 13339724 13339995 -21567575 - MER21B LTR ERV1 -125 738 471 324 160 0 0 chr21 13343696 13343746 -21563824 - MSTC LTR MaLR -6 422 373 2625 77 8 17 chr21 13343789 13344151 -21563419 - L1PB1 LINE L1 -2 6149 5791 835 266 15 0 chr21 13345020 13345223 -21562347 + MER58A DNA MER1_type 7 212 -12 3067 164 16 11 chr21 13346135 13346702 -21560868 - Tigger3b DNA MER2_type 0 1232 663 1936 187 56 29 chr21 13346702 13347242 -21560328 + MLT2A2 LTR ERVL 1 554 0 3441 142 29 62 chr21 13347242 13347933 -21559637 - Tigger3b DNA MER2_type -563 668 1 4821 107 0 58 chr21 13349559 13350334 -21557236 + LTR17 LTR ERV1 2 731 -49 389 358 76 37 chr21 13350699 13351054 -21556516 - HAL1 LINE L1 -2115 392 24 269 349 56 26 chr21 13351088 13351320 -21556250 + L2 LINE L2 1854 2092 -1222 26 50 0 0 chr21 13351749 13351789 -21555781 + AT_rich Low_complexity Low_complexity 1 40 0 2326 103 0 0 chr21 13351927 13352229 -21555341 - AluSq SINE Alu -11 302 1 2682 137 7 18 chr21 13353011 13353450 -21554120 - MER57B LTR ERV1 0 434 1 509 218 0 0 chr21 13353503 13353613 -21553957 - FLAM_A SINE Alu -9 133 24 583 255 37 34 chr21 13354189 13354716 -21552854 + L1ME2 LINE L1 5267 5827 -337 1232 184 58 4 chr21 13354716 13354993 -21552577 + L1MB7 LINE L1 5891 6182 -2 583 255 37 34 chr21 13354993 13355188 -21552382 + L1ME2 LINE L1 5827 6020 -144 543 217 21 14 chr21 13355199 13355342 -21552228 + L1MA10 LINE L1 6170 6313 -21 615 176 84 8 chr21 13357330 13357461 -21550109 + FRAM SINE Alu 21 161 -15 276 30 0 0 chr21 13359235 13359268 -21548302 + (TG)n Simple_repeat Simple_repeat 2 34 0 185 246 15 0 chr21 13360987 13361052 -21546518 + (TA)n Simple_repeat Simple_repeat 2 67 0 24 32 0 0 chr21 13361727 13361758 -21545812 + AT_rich Low_complexity Low_complexity 1 31 0 242 217 0 0 chr21 13363118 13363164 -21544406 + L2 LINE L2 3227 3272 0 5373 89 12 4 chr21 13363194 13363954 -21543616 + L1PB1 LINE L1 5383 6148 -3 1893 85 4 0 chr21 13364471 13364718 -21542852 - AluSp SINE Alu 0 313 66 271 157 20 0 chr21 13365329 13365380 -21542190 + L2 LINE L2 3261 3312 -1 22 0 0 0 chr21 13365826 13365848 -21541722 + AT_rich Low_complexity Low_complexity 1 22 0 186 211 13 26 chr21 13366783 13366859 -21540711 + GA-rich Low_complexity Low_complexity 1 75 0 2044 146 115 0 chr21 13367980 13368364 -21539206 - MSTA LTR MaLR 0 428 1 29 60 0 0 chr21 13368998 13369048 -21538522 + AT_rich Low_complexity Low_complexity 1 50 0 1285 49 12 0 chr21 13370107 13370270 -21537300 - AluY SINE Alu 0 311 147 743 273 19 52 chr21 13371015 13371282 -21536288 - MIR SINE MIR -3 259 2 2148 111 0 40 chr21 13371794 13372119 -21535451 + AluSx SINE Alu 1 312 0 287 264 45 18 chr21 13372647 13372757 -21534813 + L1ME LINE L1 5734 5846 -322 213 163 23 0 chr21 13372841 13372884 -21534686 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 54 0 0 chr21 13373002 13373039 -21534531 + AT_rich Low_complexity Low_complexity 1 37 0 2157 103 0 39 chr21 13375016 13375327 -21532243 - AluSx SINE Alu -13 299 1 6236 136 31 15 chr21 13375337 13376279 -21531291 - L1MA2 LINE L1 0 7723 6737 1514 85 35 0 chr21 13376279 13376480 -21531090 + AluSp SINE Alu 93 300 -13 6236 136 31 15 chr21 13376480 13377029 -21530541 - L1MA2 LINE L1 -986 6737 6199 737 142 0 0 chr21 13377012 13377132 -21530438 - L1MA2 LINE L1 -4159 3406 3287 7570 119 4 22 chr21 13377142 13378271 -21529299 - THE1A-int LTR MaLR -471 1109 1 2403 99 29 0 chr21 13378273 13378616 -21528954 - THE1A LTR MaLR -2 353 1 2401 189 20 6 chr21 13378616 13380948 -21526622 - L1MA2 LINE L1 -5134 2431 18 21 0 0 0 chr21 13381164 13381185 -21526385 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 13381858 13381902 -21525668 + AT_rich Low_complexity Low_complexity 1 44 0 298 289 184 10 chr21 13383049 13383250 -21524320 + L1ME LINE L1 5502 5737 -384 212 125 42 0 chr21 13383357 13383405 -21524165 + (TA)n Simple_repeat Simple_repeat 1 50 0 263 301 0 81 chr21 13384221 13384344 -21523226 - MIR SINE MIR -120 142 30 2279 127 42 14 chr21 13384560 13384914 -21522656 + THE1B LTR MaLR 1 364 0 11063 99 3 11 chr21 13384915 13385284 -21522286 + THE1B-int LTR MaLR 2 373 -1207 2076 134 3 0 chr21 13385284 13385575 -21521995 - AluSg1 SINE Alu -13 296 5 11063 99 3 11 chr21 13385575 13386710 -21520860 + THE1B-int LTR MaLR 373 1493 -87 315 79 0 0 chr21 13389028 13389066 -21518504 - tRNA-Lys-AAG tRNA tRNA -38 38 1 205 177 16 32 chr21 13389143 13389205 -21518365 + (TA)n Simple_repeat Simple_repeat 1 61 0 212 232 0 14 chr21 13389602 13389671 -21517899 + GA-rich Low_complexity Low_complexity 3 70 0 800 361 47 12 chr21 13390764 13391190 -21516380 - L3 LINE CR1 -150 1427 987 304 268 41 10 chr21 13392353 13392450 -21515120 - MIR3 SINE MIR 0 208 109 344 352 62 42 chr21 13392624 13392775 -21514795 + L2 LINE L2 2936 3083 -230 2534 112 16 13 chr21 13392775 13393149 -21514421 + THE1C LTR MaLR 1 375 0 344 352 62 42 chr21 13393149 13393352 -21514218 + L2 LINE L2 3083 3297 -16 1837 113 28 7 chr21 13395023 13395314 -21512256 - L1PA13 LINE L1 -5 6158 5862 1655 64 13 30 chr21 13395314 13395547 -21512023 + L1PA13 LINE L1 5652 5880 -288 3143 132 7 63 chr21 13396003 13396149 -21511421 + L1PA15 LINE L1 5629 5782 -383 1878 144 4 0 chr21 13396149 13396419 -21511151 + AluSq SINE Alu 4 274 -39 3143 132 7 63 chr21 13396419 13396827 -21510743 + L1PA15 LINE L1 5782 6152 -13 21 0 0 0 chr21 13396899 13396920 -21510650 + AT_rich Low_complexity Low_complexity 1 21 0 2162 105 57 23 chr21 13396926 13397278 -21510292 - THE1B LTR MaLR 0 364 1 26 74 0 0 chr21 13397720 13397774 -21509796 + AT_rich Low_complexity Low_complexity 1 54 0 2105 160 28 25 chr21 13397898 13398261 -21509309 + THE1B LTR MaLR 1 364 0 6474 101 16 1 chr21 13398261 13399721 -21507849 + THE1B-int LTR MaLR 1 1580 0 2195 120 57 20 chr21 13399722 13400072 -21507498 + THE1B LTR MaLR 2 364 0 1356 222 25 52 chr21 13400132 13400533 -21507037 - MLT2C1 LTR ERVL -7 390 1 25 0 0 0 chr21 13400600 13400625 -21506945 + AT_rich Low_complexity Low_complexity 1 25 0 1280 272 48 6 chr21 13400735 13401048 -21506522 - MLT1H LTR MaLR -221 328 3 2411 77 7 0 chr21 13401353 13401652 -21505918 + AluY SINE Alu 1 301 -10 182 294 169 65 chr21 13402571 13402755 -21504815 - L2 LINE L2 -2789 525 323 189 271 0 17 chr21 13402818 13402877 -21504693 + L2 LINE L2 3236 3293 -20 323 385 92 17 chr21 13403812 13404160 -21503410 - L2 LINE L2 -384 2930 2557 236 338 65 40 chr21 13404205 13404406 -21503164 - L2 LINE L2 -898 2416 2211 2607 141 9 9 chr21 13405155 13405588 -21501982 + MER57B LTR ERV1 2 434 0 2090 97 4 0 chr21 13405710 13405979 -21501591 - AluSq SINE Alu -10 303 34 1983 162 3 0 chr21 13406946 13407255 -21500315 - AluSx SINE Alu 0 312 3 243 318 103 56 chr21 13407908 13408103 -21499467 + MIR SINE MIR 6 209 -53 1521 194 48 3 chr21 13409669 13409843 -21497727 - AluJb SINE Alu -5 307 113 180 0 0 0 chr21 13409843 13409863 -21497707 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1521 194 48 3 chr21 13409863 13409982 -21497588 - AluJb SINE Alu -199 113 1 2017 120 0 0 chr21 13412731 13413007 -21494563 + AluSx SINE Alu 1 276 -36 486 0 0 0 chr21 13413009 13413063 -21494507 + (TAAA)n Simple_repeat Simple_repeat 1 54 0 306 0 0 0 chr21 13414173 13414207 -21493363 + (TG)n Simple_repeat Simple_repeat 2 35 0 2060 116 7 3 chr21 13414970 13415262 -21492308 + AluSx SINE Alu 1 293 -19 2105 114 23 0 chr21 13417011 13417317 -21490253 + AluSq SINE Alu 1 313 0 189 0 0 0 chr21 13417609 13417630 -21489940 + (T)n Simple_repeat Simple_repeat 1 21 0 1636 157 3 60 chr21 13418332 13418632 -21488938 + AluJo SINE Alu 6 288 -24 745 235 63 74 chr21 13419098 13419566 -21488004 + MLT1D LTR MaLR 1 505 0 221 164 33 16 chr21 13420425 13420486 -21487084 + (TTATA)n Simple_repeat Simple_repeat 1 62 0 21 36 0 0 chr21 13420562 13420590 -21486980 + AT_rich Low_complexity Low_complexity 1 28 0 761 282 27 14 chr21 13420799 13421022 -21486548 + MIR SINE MIR 10 235 -27 1926 114 0 0 chr21 13421861 13422124 -21485446 - AluSg SINE Alu -4 306 44 998 217 62 20 chr21 13422839 13422959 -21484611 - AluJo SINE Alu -58 254 140 186 43 0 0 chr21 13422959 13422982 -21484588 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 998 217 62 20 chr21 13422982 13423105 -21484465 - AluJo SINE Alu -172 140 1 1760 220 35 66 chr21 13423237 13423755 -21483815 + MLT1D LTR MaLR 3 504 -1 246 208 52 25 chr21 13424385 13424514 -21483056 - L2 LINE L2 -5 3267 3158 385 325 0 0 chr21 13425006 13425123 -21482447 + MIR3 SINE MIR 87 203 -5 333 47 0 0 chr21 13425567 13425610 -21481960 + (CA)n Simple_repeat Simple_repeat 2 44 0 2195 110 0 7 chr21 13425647 13425947 -21481623 + AluSx SINE Alu 1 298 -14 2284 95 0 0 chr21 13426066 13426361 -21481209 - AluSx SINE Alu -17 295 1 246 62 0 0 chr21 13427065 13427097 -21480473 + (T)n Simple_repeat Simple_repeat 1 32 0 291 191 0 0 chr21 13427233 13427296 -21480274 + CT-rich Low_complexity Low_complexity 2 64 0 1926 216 35 30 chr21 13428861 13429424 -21478146 - MLT2B2 LTR ERVL -1 553 1 2029 144 7 0 chr21 13429487 13429786 -21477784 - AluSx SINE Alu -11 301 1 1862 174 24 0 chr21 13431252 13431592 -21475978 - MER7A DNA MER2_type 0 346 1 1219 142 0 0 chr21 13432643 13432819 -21474751 + AluSc SINE Alu 128 303 -6 668 122 0 0 chr21 13433370 13433460 -21474110 + 5S rRNA rRNA 1 90 -31 1482 174 83 67 chr21 13433595 13433981 -21473589 - MSTD LTR MaLR -1 395 4 236 339 61 48 chr21 13434626 13434791 -21472779 - MIR SINE MIR -47 215 49 295 326 0 0 chr21 13435071 13435157 -21472413 - L2 LINE L2 -259 3054 2969 1374 244 40 3 chr21 13435202 13435530 -21472040 + MER58B DNA MER1_type 1 340 -1 1420 326 85 30 chr21 13435534 13436407 -21471163 - L2 LINE L2 -421 2893 1973 22 0 0 0 chr21 13436521 13436543 -21471027 + AT_rich Low_complexity Low_complexity 1 22 0 205 267 67 67 chr21 13438039 13438129 -21469441 - MIR SINE MIR -123 139 50 2400 115 80 8 chr21 13438825 13439224 -21468346 + MSTA LTR MaLR 1 428 0 183 395 53 0 chr21 13439323 13439399 -21468171 + L2 LINE L2 3188 3267 -5 373 319 68 12 chr21 13439616 13439779 -21467791 - MIR SINE MIR -67 195 24 357 125 0 0 chr21 13440797 13440853 -21466717 + (CA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr21 13440896 13440918 -21466652 + AT_rich Low_complexity Low_complexity 1 22 0 2092 109 0 0 chr21 13441496 13441780 -21465790 - AluSg SINE Alu 0 310 27 495 305 30 39 chr21 13443761 13443994 -21463576 + MIR SINE MIR 32 262 0 519 294 92 7 chr21 13444885 13445038 -21462532 + MIR SINE MIR 3 168 -94 2163 134 0 0 chr21 13445380 13445685 -21461885 - AluSx SINE Alu -7 305 1 231 303 30 10 chr21 13446631 13446730 -21460840 - MLT1G1 LTR MaLR 0 595 495 784 67 0 0 chr21 13447418 13447523 -21460047 + L1PA6 LINE L1 6049 6153 -1 21 36 0 0 chr21 13449545 13449573 -21457997 + AT_rich Low_complexity Low_complexity 1 28 0 324 48 0 0 chr21 13450610 13450652 -21456918 + (CA)n Simple_repeat Simple_repeat 1 42 0 1592 236 54 32 chr21 13451465 13452054 -21455516 - L1 LINE L1 -3865 2169 1567 3205 262 41 32 chr21 13452078 13453312 -21454258 - L1 LINE L1 -4095 939 245 492 319 127 0 chr21 13453915 13454081 -21453489 - L1M3c LINE L1 -4520 1621 1435 467 305 35 20 chr21 13454115 13454315 -21453255 - L1 LINE L1 -5738 217 15 2193 132 0 3 chr21 13454672 13454982 -21452588 - AluSx SINE Alu -3 309 1 249 180 0 0 chr21 13455399 13455449 -21452121 + (TA)n Simple_repeat Simple_repeat 2 51 0 361 235 45 15 chr21 13455606 13455738 -21451832 + (CATATA)n Simple_repeat Simple_repeat 6 141 0 4904 220 52 29 chr21 13456020 13458095 -21449475 - L1MB8 LINE L1 -1 6177 3978 288 0 0 0 chr21 13459308 13459340 -21448230 + (TA)n Simple_repeat Simple_repeat 2 33 0 333 0 0 0 chr21 13459339 13459376 -21448194 + (TG)n Simple_repeat Simple_repeat 2 38 0 800 186 21 0 chr21 13459748 13459888 -21447682 + AluJb SINE Alu 104 246 -66 4942 165 37 37 chr21 13460683 13462090 -21445480 + L1MA8 LINE L1 4891 6285 -6 25 0 0 0 chr21 13462578 13462603 -21444967 + AT_rich Low_complexity Low_complexity 1 25 0 216 375 45 0 chr21 13462611 13462699 -21444871 + L2 LINE L2 3202 3293 -20 21 0 0 0 chr21 13463328 13463349 -21444221 + AT_rich Low_complexity Low_complexity 1 21 0 273 305 21 21 chr21 13464224 13464319 -21443251 - L2 LINE L2 0 3313 3219 181 297 54 0 chr21 13464575 13464649 -21442921 - L2 LINE L2 -435 2879 2802 1047 250 38 56 chr21 13464650 13465043 -21442527 - L1MB8 LINE L1 -2133 4013 3627 3875 95 11 4 chr21 13465043 13465599 -21441971 + L1PA12 LINE L1 5609 6168 0 1047 250 38 56 chr21 13465599 13465653 -21441917 - L1MB8 LINE L1 -2519 3627 3574 794 268 40 28 chr21 13465717 13465986 -21441584 - L1MB8 LINE L1 -3357 2789 2514 1045 242 67 64 chr21 13465986 13466375 -21441195 - MLT1B LTR MaLR 0 390 1 794 268 40 28 chr21 13466375 13466430 -21441140 - L1MB8 LINE L1 -3632 2514 2461 274 344 24 38 chr21 13466461 13466839 -21440731 + L1MB2 LINE L1 34 784 -5519 9433 215 52 32 chr21 13467012 13472448 -21435122 + L1MB2 LINE L1 777 6372 -35 911 255 108 20 chr21 13472464 13472954 -21434616 - L1MEc LINE L1 -3873 2523 1991 751 291 16 48 chr21 13473108 13473483 -21434087 - L1MEc LINE L1 -4640 1756 1394 2215 105 3 0 chr21 13473908 13474212 -21433358 + AluSx SINE Alu 1 305 -7 260 250 87 22 chr21 13474384 13474476 -21433094 - MLT1I LTR MaLR -11 398 301 23 0 0 0 chr21 13475910 13475933 -21431637 + AT_rich Low_complexity Low_complexity 1 23 0 22 94 0 0 chr21 13475972 13476036 -21431534 + AT_rich Low_complexity Low_complexity 1 64 0 350 255 118 66 chr21 13476411 13476623 -21430947 + L2 LINE L2 2921 3143 -170 465 288 7 14 chr21 13476623 13476769 -21430801 - LTR16B LTR ERVL 0 464 320 1927 112 42 3 chr21 13476781 13477068 -21430502 + THE1C LTR MaLR 1 298 -77 1330 194 0 62 chr21 13478257 13478546 -21429024 + AluJo SINE Alu 3 273 -39 390 42 0 0 chr21 13478553 13478601 -21428969 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 2879 124 5 0 chr21 13478602 13479029 -21428541 - MER57B LTR ERV1 -3 431 3 318 26 0 0 chr21 13479029 13479068 -21428502 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr21 13479192 13479220 -21428350 + AT_rich Low_complexity Low_complexity 1 28 0 32 0 0 0 chr21 13479599 13479631 -21427939 + AT_rich Low_complexity Low_complexity 1 32 0 206 143 20 0 chr21 13479718 13479767 -21427803 + (TA)n Simple_repeat Simple_repeat 1 50 0 23 54 0 0 chr21 13480601 13480638 -21426932 + AT_rich Low_complexity Low_complexity 1 37 0 30 0 0 0 chr21 13480817 13480847 -21426723 + AT_rich Low_complexity Low_complexity 1 30 0 457 273 86 27 chr21 13481133 13481320 -21426250 - MIR SINE MIR 0 262 65 1552 160 168 24 chr21 13481431 13481805 -21425765 + MSTA LTR MaLR 1 428 0 473 260 77 65 chr21 13483465 13483711 -21423859 + MLT1F1 LTR MaLR 65 313 -254 446 258 45 8 chr21 13483705 13483837 -21423733 + MLT1F1 LTR MaLR 429 565 -2 1890 189 11 19 chr21 13484328 13484698 -21422872 + MLT1A2 LTR MaLR 1 367 -7 2010 108 3 14 chr21 13485003 13485116 -21422454 + AluY SINE Alu 1 320 0 1319 81 6 6 chr21 13485116 13485326 -21422244 + AluSg/x SINE Alu 110 319 0 23 0 0 0 chr21 13486659 13486682 -21420888 + AT_rich Low_complexity Low_complexity 1 23 0 1837 143 36 7 chr21 13487354 13487655 -21419915 + AluSx SINE Alu 1 310 -2 1088 127 49 127 chr21 13487722 13487967 -21419603 - MLT1A1 LTR MaLR -139 226 1 2352 77 0 3 chr21 13488243 13488543 -21419027 + AluY SINE Alu 1 299 -12 711 288 52 5 chr21 13490299 13490511 -21417059 - MIR SINE MIR -26 236 15 610 89 18 0 chr21 13490607 13490719 -21416851 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 238 302 23 12 chr21 13490725 13490748 -21416822 + (TGGA)n Simple_repeat Simple_repeat 2 23 -65 198 0 0 0 chr21 13490748 13490770 -21416800 + (ATG)n Simple_repeat Simple_repeat 3 24 0 238 302 23 12 chr21 13490770 13490832 -21416738 + (TGGA)n Simple_repeat Simple_repeat 23 88 0 209 313 60 0 chr21 13490956 13491039 -21416531 - L2 LINE L2 -48 3224 3137 461 333 0 0 chr21 13491654 13491783 -21415787 - MIR SINE MIR -132 130 2 21 0 0 0 chr21 13492347 13492368 -21415202 + AT_rich Low_complexity Low_complexity 1 21 0 961 307 67 30 chr21 13492454 13492610 -21414960 + L1ME3 LINE L1 5745 5894 -268 255 61 0 0 chr21 13492610 13492643 -21414927 + (CA)n Simple_repeat Simple_repeat 2 34 0 961 307 67 30 chr21 13492643 13492887 -21414683 + L1ME3 LINE L1 5894 6160 -2 858 184 35 75 chr21 13492982 13493210 -21414360 - MER20 DNA MER1_type 0 219 1 22 56 0 0 chr21 13493394 13493430 -21414140 + AT_rich Low_complexity Low_complexity 1 36 0 1510 178 37 43 chr21 13493439 13493787 -21413783 + MER4A LTR ERV1 1 346 -318 251 62 25 188 chr21 13493771 13493851 -21413719 + MER4A LTR ERV1 288 354 -310 2080 107 21 0 chr21 13494114 13494403 -21413167 - AluSq SINE Alu -18 295 1 2913 164 69 2 chr21 13495292 13495811 -21411759 + MER41C LTR ERV1 1 554 0 2202 124 19 35 chr21 13495814 13496184 -21411386 + THE1B LTR MaLR 1 364 0 349 231 106 10 chr21 13498084 13498188 -21409382 + L1MC5 LINE L1 7753 7866 -95 14197 179 13 7 chr21 13498302 13502363 -21405207 + L1PB1 LINE L1 2778 6865 -2 540 230 79 13 chr21 13502380 13502532 -21405038 - L1MA10 LINE L1 -4 6330 6169 22 0 0 0 chr21 13503593 13503615 -21403955 + AT_rich Low_complexity Low_complexity 1 22 0 2561 214 10 25 chr21 13503668 13504316 -21403254 + L1MA9 LINE L1 5208 5845 -467 1676 181 39 3 chr21 13504321 13504681 -21402889 + L1MA9 LINE L1 5940 6312 0 535 252 73 87 chr21 13504684 13504890 -21402680 + MIR SINE MIR 47 249 -13 22 0 0 0 chr21 13507187 13507209 -21400361 + AT_rich Low_complexity Low_complexity 1 22 0 1251 160 63 21 chr21 13507486 13507724 -21399846 - Tigger2 DNA MER2_type -10 2708 2461 3860 171 35 9 chr21 13507781 13508516 -21399054 - Tigger2 DNA MER2_type -1964 754 1 960 258 101 45 chr21 13508660 13509016 -21398554 + MLT2B1 LTR ERVL 7 382 -138 819 270 32 4 chr21 13509027 13509279 -21398291 + LTR40b LTR ERVL 204 462 0 3788 146 8 18 chr21 13509806 13510464 -21397106 - L1MA9 LINE L1 -2 6310 5660 321 194 0 15 chr21 13510464 13510531 -21397039 + L1MA9 LINE L1 5594 5659 -641 21 36 0 0 chr21 13510627 13510655 -21396915 + AT_rich Low_complexity Low_complexity 1 28 0 464 203 23 55 chr21 13510962 13511090 -21396480 + MER103 DNA DNA 8 131 -35 707 203 5 74 chr21 13511810 13512012 -21395558 + L1MA10 LINE L1 6113 6300 -34 315 0 0 0 chr21 13512043 13512078 -21395492 + (TG)n Simple_repeat Simple_repeat 2 36 0 5328 132 6 13 chr21 13513411 13514270 -21393300 + L1PA13 LINE L1 5311 6163 0 1512 172 67 70 chr21 13514295 13514669 -21392901 - MER67C LTR ERV1 -243 271 1 2116 106 3 3 chr21 13515126 13515419 -21392151 - AluSc SINE Alu -16 293 1 25 31 0 0 chr21 13515486 13515518 -21392052 + AT_rich Low_complexity Low_complexity 1 32 0 749 165 0 0 chr21 13515724 13515839 -21391731 + MER57B LTR ERV1 1 115 -319 851 110 26 52 chr21 13515843 13515998 -21391572 + MER57B LTR ERV1 284 434 0 228 228 18 44 chr21 13516015 13516129 -21391441 + A-rich Low_complexity Low_complexity 4 114 0 321 331 21 42 chr21 13516277 13516419 -21391151 + L1MD3 LINE L1 6593 6781 -1077 370 247 0 12 chr21 13516423 13516508 -21391062 + L1MC5 LINE L1 6782 6865 -1096 1643 126 4 0 chr21 13516511 13516741 -21390829 + AluSx SINE Alu 1 231 -81 1290 215 57 61 chr21 13516780 13517221 -21390349 + L1MC5 LINE L1 6974 7412 -549 276 247 44 93 chr21 13517366 13517548 -21390022 + L1ME3 LINE L1 5963 6135 -27 181 0 0 65 chr21 13521216 13521247 -21386323 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 297 232 96 45 chr21 13521377 13521554 -21386016 + MER113 DNA MER1_type? 20 205 -316 180 0 0 0 chr21 13521630 13521650 -21385920 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 285 263 26 9 chr21 13522254 13522368 -21385202 + (CATATA)n Simple_repeat Simple_repeat 5 120 0 25 31 0 0 chr21 13522782 13522814 -21384756 + AT_rich Low_complexity Low_complexity 1 32 0 1376 264 75 38 chr21 13523207 13523266 -21384304 + L2 LINE L2 1768 1823 -1491 1980 84 47 44 chr21 13523266 13523448 -21384122 - AluSc SINE Alu -12 297 112 216 0 0 0 chr21 13523448 13523472 -21384098 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1980 84 47 44 chr21 13523472 13523585 -21383985 - AluSc SINE Alu -197 112 1 1376 264 75 38 chr21 13523585 13524111 -21383459 + L2 LINE L2 1823 2375 -939 566 320 76 26 chr21 13524257 13524709 -21382861 + L2 LINE L2 2679 3144 -169 2850 90 0 3 chr21 13525255 13525631 -21381939 + THE1C LTR MaLR 1 375 0 183 186 0 0 chr21 13526775 13526818 -21380752 + GA-rich Low_complexity Low_complexity 3 45 0 2588 199 4 6 chr21 13527381 13527854 -21379716 + MER70A LRE ERV 1 472 0 4875 89 13 6 chr21 13528577 13529260 -21378310 + L1PA10 LINE L1 5481 6168 0 202 114 0 29 chr21 13529758 13529793 -21377777 + (GAGTG)n Simple_repeat Simple_repeat 5 38 0 363 291 16 0 chr21 13530224 13530351 -21377219 + L1ME LINE L1 5526 5654 -467 606 152 0 0 chr21 13531708 13531813 -21375757 - AluSg/x SINE Alu -4 305 201 1684 180 13 7 chr21 13534421 13534726 -21372844 - AluJo SINE Alu -3 309 3 350 171 40 0 chr21 13534861 13534937 -21372633 - MER116 DNA Mariner 0 80 2 265 299 58 0 chr21 13536511 13536598 -21370972 - MLT1G LTR MaLR -4 586 495 1020 230 49 0 chr21 13536712 13536938 -21370632 - MLT1H LTR MaLR -260 289 53 347 162 15 0 chr21 13537271 13537339 -21370231 - MER116 DNA Mariner 0 80 12 1966 147 5 81 chr21 13539166 13539561 -21368009 + MLT1A1 LTR MaLR 1 365 0 254 192 0 14 chr21 13539695 13539768 -21367802 + (CATATA)n Simple_repeat Simple_repeat 1 72 0 3099 242 78 21 chr21 13539830 13541239 -21366331 + L1M3e LINE L1 1158 2516 -4521 270 81 0 0 chr21 13541246 13541283 -21366287 + (TA)n Simple_repeat Simple_repeat 1 37 0 945 261 33 18 chr21 13541283 13541701 -21365869 + L1M4c LINE L1 1588 2083 -4299 7233 142 30 31 chr21 13541802 13544058 -21363512 + L1MA8 LINE L1 3994 6288 -3 260 317 48 81 chr21 13544087 13544273 -21363297 + MIR3 SINE MIR 19 198 -10 343 126 146 58 chr21 13545899 13546002 -21361568 - L1MC5 LINE L1 -159 7802 7691 1297 214 71 36 chr21 13546070 13546520 -21361050 + MER74A LTR ERVL 4 546 -12 617 185 68 25 chr21 13547604 13547766 -21359804 - MER53 DNA DNA -20 169 1 2459 84 0 0 chr21 13548088 13548399 -21359171 - AluSq SINE Alu -2 311 1 23 54 0 0 chr21 13548758 13548795 -21358775 + AT_rich Low_complexity Low_complexity 1 37 0 312 274 0 14 chr21 13549821 13549894 -21357676 - MLT1I LTR MaLR -110 299 228 4944 208 46 31 chr21 13550274 13551654 -21355916 + Charlie1a DNA MER1_type 2 1406 -1355 2168 95 3 26 chr21 13551654 13551958 -21355612 - AluSx SINE Alu -15 297 1 4944 208 46 31 chr21 13551958 13552005 -21355565 + Charlie1a DNA MER1_type 1406 1451 -4 232 300 0 60 chr21 13552832 13552982 -21354588 + T-rich Low_complexity Low_complexity 5 145 0 215 42 21 62 chr21 13553138 13553186 -21354384 + (CATA)n Simple_repeat Simple_repeat 2 47 0 1472 136 120 0 chr21 13553414 13553656 -21353914 + AluSx SINE Alu 3 273 -39 1901 133 48 0 chr21 13553816 13554109 -21353461 - AluSx SINE Alu -5 307 1 2019 135 3 0 chr21 13554175 13554478 -21353092 + AluSx SINE Alu 1 304 -8 2566 279 60 20 chr21 13554615 13555908 -21351662 + L1ME LINE L1 124 1360 -4722 1825 212 18 35 chr21 13555903 13556356 -21351214 + L1MA10 LINE L1 5811 6255 -79 272 306 82 30 chr21 13556503 13556994 -21350576 + L1ME LINE L1 1526 2041 -4039 752 267 64 7 chr21 13556974 13557270 -21350300 + L1ME LINE L1 2244 2556 -3524 2048 109 17 3 chr21 13559012 13559306 -21348264 + AluSg SINE Alu 1 298 -12 32 43 0 0 chr21 13559799 13559845 -21347725 + AT_rich Low_complexity Low_complexity 1 46 0 718 262 94 9 chr21 13561092 13561325 -21346245 + MIR SINE MIR 10 262 0 25 0 0 0 chr21 13561824 13561849 -21345721 + AT_rich Low_complexity Low_complexity 1 25 0 370 130 0 0 chr21 13562013 13562067 -21345503 - FRAM/FAM SINE Alu -82 84 31 2192 78 0 27 chr21 13563162 13563455 -21344115 + AluY SINE Alu 1 285 -26 211 323 118 16 chr21 13564870 13564997 -21342573 + MIR SINE MIR 2 141 -121 1493 269 20 11 chr21 13565016 13565455 -21342115 - LTR47B LTR ERVL 0 443 1 432 265 90 50 chr21 13565589 13565868 -21341702 - L2 LINE L2 -141 3172 2883 2554 103 57 36 chr21 13566090 13566318 -21341252 - MSTA LTR MaLR 0 428 185 1936 152 0 7 chr21 13566318 13566615 -21340955 - AluSx SINE Alu -17 295 1 2554 103 57 36 chr21 13566615 13566805 -21340765 - MSTA LTR MaLR -243 185 1 433 282 29 52 chr21 13566912 13567086 -21340484 + LTR33 LTR ERVL 349 518 -3 21 0 0 0 chr21 13568013 13568034 -21339536 + AT_rich Low_complexity Low_complexity 1 21 0 447 252 50 0 chr21 13570192 13570291 -21337279 - MER5A DNA MER1_type -77 112 9 479 333 64 68 chr21 13570613 13571190 -21336380 + HAL1 LINE L1 1128 1702 -805 269 226 12 36 chr21 13571333 13571417 -21336153 + GA-rich Low_complexity Low_complexity 2 83 0 1568 225 34 0 chr21 13572861 13573186 -21334384 - MLT1A1 LTR MaLR -2 363 28 1770 124 34 48 chr21 13573205 13573496 -21334074 + THE1B LTR MaLR 1 287 -77 388 273 94 45 chr21 13574985 13575373 -21332197 - MLT1J1 LTR MaLR -48 402 8 196 235 44 44 chr21 13575442 13575510 -21332060 + MIR3 SINE MIR 138 205 -3 1521 73 0 0 chr21 13576084 13576290 -21331280 - L1P LINE L1 -1679 4467 4262 9615 104 10 2 chr21 13576283 13577713 -21329857 - L1P LINE L1 -2406 3740 2300 240 29 59 0 chr21 13577870 13577904 -21329666 - L1P LINE L1 -1680 4466 4431 3900 118 2 0 chr21 13577891 13578469 -21329101 - L1P LINE L1 -3856 2290 1712 6983 54 6 2 chr21 13578471 13580051 -21327519 + L1PA7 LINE L1 4564 6151 -3 444 267 0 0 chr21 13580343 13580474 -21327096 + (TA)n Simple_repeat Simple_repeat 2 132 0 243 131 0 49 chr21 13580476 13580537 -21327033 - LTR66 LTR ERVL -393 217 160 28 0 0 0 chr21 13580684 13580712 -21326858 + AT_rich Low_complexity Low_complexity 1 28 0 444 222 37 0 chr21 13580835 13580943 -21326627 - Charlie7 DNA MER1_type -312 2300 2189 698 263 97 50 chr21 13580961 13581341 -21326229 - Charlie7 DNA MER1_type -1952 660 263 2037 84 8 0 chr21 13581603 13581865 -21325705 + AluSq SINE Alu 1 264 -49 279 0 0 0 chr21 13581879 13581910 -21325660 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 280 183 0 70 chr21 13581913 13581984 -21325586 - MER5A DNA MER1_type -97 92 27 5354 166 26 7 chr21 13584057 13586062 -21321508 + L1PA16 LINE L1 4126 6166 0 295 349 78 16 chr21 13586217 13586409 -21321161 + MIR SINE MIR 47 250 -12 24 0 0 0 chr21 13589283 13589307 -21318263 + AT_rich Low_complexity Low_complexity 1 24 0 416 267 26 9 chr21 13589348 13589464 -21318106 + L2 LINE L2 3192 3309 -4 25 83 0 0 chr21 13589593 13589653 -21317917 + AT_rich Low_complexity Low_complexity 1 60 0 34 42 0 0 chr21 13589669 13589717 -21317853 + AT_rich Low_complexity Low_complexity 1 48 0 1774 57 0 9 chr21 13591412 13591640 -21315930 + L1PA8 LINE L1 5939 6164 -8 217 339 46 0 chr21 13592636 13592701 -21314869 - L2 LINE L2 -19 3253 3186 699 226 60 10 chr21 13594154 13594353 -21313217 + L1MD2 LINE L1 5912 6120 -239 509 233 50 19 chr21 13594386 13594545 -21313025 + L1MD2 LINE L1 6194 6357 -2 2324 75 0 0 chr21 13595783 13596078 -21311492 - AluY SINE Alu -16 295 1 1060 149 37 0 chr21 13596461 13596676 -21310894 - L1MA8 LINE L1 0 6291 6069 26 50 0 0 chr21 13596974 13597014 -21310556 + AT_rich Low_complexity Low_complexity 1 40 0 229 159 0 23 chr21 13598963 13599007 -21308563 - L2 LINE L2 -8 3305 3263 223 295 133 0 chr21 13598975 13599080 -21308490 - MIR SINE MIR -13 249 131 2181 112 3 10 chr21 13599158 13599461 -21308109 + AluSx SINE Alu 1 301 -11 4725 163 28 5 chr21 13599466 13600335 -21307235 + MER49 LTR ERV1 5 893 -30 299 230 97 97 chr21 13601870 13601934 -21305636 + MER5A DNA MER1_type 1 64 -125 1565 184 14 20 chr21 13601934 13602227 -21305343 + AluJb SINE Alu 1 291 -21 299 230 97 97 chr21 13602227 13602327 -21305243 + MER5A DNA MER1_type 63 165 -24 510 302 0 2 chr21 13603701 13603852 -21303718 - MIR SINE MIR -62 146 21 331 118 15 15 chr21 13604731 13604799 -21302771 + (TCC)n Simple_repeat Simple_repeat 2 69 0 868 154 0 16 chr21 13604807 13604989 -21302581 + CT-rich Low_complexity Low_complexity 1 179 0 206 206 0 0 chr21 13604989 13605023 -21302547 + C-rich Low_complexity Low_complexity 4 37 0 2600 200 34 4 chr21 13605327 13605861 -21301709 - MER44D DNA MER2_type 0 605 1 207 0 0 0 chr21 13606117 13606140 -21301430 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 1240 194 27 18 chr21 13606318 13606649 -21300921 - L1MA4 LINE L1 0 6303 5972 7941 204 27 13 chr21 13606652 13609241 -21298329 - L1 LINE L1 -2131 4197 1535 6060 112 4 3 chr21 13609241 13610793 -21296777 + L1PA14 LINE L1 4610 6159 -2 7941 204 27 13 chr21 13610793 13612350 -21295220 - L1 LINE L1 -4793 1535 1 227 308 77 39 chr21 13612401 13612531 -21295039 - LTR16C LTR ERVL 0 491 357 573 205 90 0 chr21 13614385 13614551 -21293019 - L1MB3 LINE L1 -115 6068 5888 470 148 215 15 chr21 13614548 13614683 -21292887 + L1 LINE L1 4104 4265 -1881 641 143 0 9 chr21 13614685 13614797 -21292773 + L1MB3 LINE L1 6071 6181 -2 2265 65 51 3 chr21 13615181 13615475 -21292095 - AluY SINE Alu -3 308 1 23 33 0 0 chr21 13616560 13616590 -21290980 + AT_rich Low_complexity Low_complexity 1 30 0 226 193 35 0 chr21 13617304 13617361 -21290209 + MLT1J2 LTR MaLR 76 134 -316 1154 244 85 51 chr21 13617564 13617998 -21289572 + L2 LINE L2 2864 3312 -1 351 264 38 28 chr21 13618231 13618443 -21289127 + L1ME LINE L1 5602 5815 -306 1936 152 30 9 chr21 13619419 13619755 -21287815 - MER61A LTR ERV1 0 343 1 296 353 47 16 chr21 13620039 13620229 -21287341 + MLT1I LTR MaLR 74 269 -140 186 106 30 45 chr21 13620258 13620324 -21287246 + A-rich Low_complexity Low_complexity 2 66 0 435 253 144 14 chr21 13620452 13620598 -21286972 + MIR SINE MIR 71 235 -27 2437 121 3 22 chr21 13620843 13621214 -21286356 + THE1B LTR MaLR 1 364 0 1127 162 59 50 chr21 13622252 13622573 -21284997 - MER33 DNA MER1_type 0 324 1 221 282 40 24 chr21 13622992 13623116 -21284454 + L2 LINE L2 2458 2583 -731 2075 121 11 0 chr21 13623740 13624054 -21283516 - AluSx SINE Alu 0 317 1 281 271 6 22 chr21 13624266 13624447 -21283123 + GA-rich Low_complexity Low_complexity 3 180 0 23 0 0 0 chr21 13624563 13624586 -21282984 + AT_rich Low_complexity Low_complexity 1 23 0 1661 113 65 0 chr21 13625381 13625628 -21281942 - AluSx SINE Alu -14 298 36 1446 139 11 18 chr21 13625649 13625922 -21281648 + L1MA5A LINE L1 6027 6297 0 2211 155 71 30 chr21 13626034 13626499 -21281071 + MER31A LTR ERV1 1 484 -1 2243 113 7 0 chr21 13626766 13627068 -21280502 - AluSx SINE Alu -8 304 1 28 0 0 0 chr21 13627148 13627176 -21280394 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 13629032 13629055 -21278515 + AT_rich Low_complexity Low_complexity 1 23 0 1953 137 66 3 chr21 13629179 13629559 -21278011 + L1MA8 LINE L1 5885 6288 -3 3861 241 21 9 chr21 13630261 13630733 -21276837 + L1M1 LINE L1 28 493 -7072 2518 50 0 0 chr21 13630733 13631034 -21276536 + AluY SINE Alu 1 301 -10 3861 241 21 9 chr21 13631034 13631927 -21275643 + L1M1 LINE L1 493 2086 -5479 7524 171 26 29 chr21 13631934 13632307 -21275263 + L1M1 LINE L1 4269 4641 -2924 3271 79 32 5 chr21 13632307 13632748 -21274822 + MLT2A2 LTR ERVL 1 453 0 10961 114 10 1 chr21 13632751 13634312 -21273258 + THE1A-int LTR MaLR 5 1580 0 1989 139 8 43 chr21 13634312 13634680 -21272890 + THE1A LTR MaLR 1 355 0 7524 171 26 29 chr21 13634680 13635776 -21271794 + L1M1 LINE L1 4642 5741 -1824 1640 118 130 11 chr21 13635776 13636046 -21271524 - AluSp SINE Alu -1 302 1 7524 171 26 29 chr21 13636046 13636211 -21271359 + L1M1 LINE L1 5741 5905 -1660 4179 189 16 17 chr21 13636234 13637413 -21270157 + L1M1 LINE L1 5884 7059 -665 1806 131 10 13 chr21 13637405 13637711 -21269859 - L1M1 LINE L1 -4460 3105 2801 2431 186 13 26 chr21 13637685 13638703 -21268867 - L1M1 LINE L1 -6018 1547 439 7033 117 12 9 chr21 13638720 13640023 -21267547 + L1MA1 LINE L1 4983 6292 -10 767 159 62 7 chr21 13640024 13640169 -21267401 + L1MA6 LINE L1 5495 5647 -644 2084 154 68 51 chr21 13640178 13640652 -21266918 + L1MA6 LINE L1 5817 6298 -2 261 83 0 0 chr21 13641136 13641172 -21266398 + (CA)n Simple_repeat Simple_repeat 1 36 0 23 33 0 0 chr21 13642276 13642306 -21265264 + AT_rich Low_complexity Low_complexity 1 30 0 201 273 18 0 chr21 13644038 13644093 -21263477 - MIR SINE MIR -109 153 98 1743 72 25 0 chr21 13644424 13644659 -21262911 + L1PA7 LINE L1 5910 6150 -4 387 360 69 36 chr21 13645215 13645604 -21261966 + L2 LINE L2 2912 3313 0 1250 196 92 40 chr21 13645681 13645964 -21261606 - MLT1A1 LTR MaLR 0 365 59 2310 155 9 36 chr21 13645964 13646402 -21261168 - MSTB LTR MaLR 0 426 1 1250 196 92 40 chr21 13646402 13646465 -21261105 - MLT1A1 LTR MaLR -306 59 1 1267 108 97 56 chr21 13646582 13646851 -21260719 + L1MA7 LINE L1 6011 6290 -1 255 171 29 29 chr21 13647178 13647248 -21260322 + L3 LINE CR1 1343 1412 -165 1224 208 94 70 chr21 13648764 13649162 -21258408 + L1MDb LINE L1 82 445 -6095 250 296 113 21 chr21 13649172 13649314 -21258256 + L1MDb LINE L1 779 933 -5607 2827 212 83 19 chr21 13649412 13650182 -21257388 + L1MDb LINE L1 783 1494 -4944 2374 86 0 0 chr21 13650336 13650627 -21256943 + AluSx SINE Alu 1 291 -21 233 186 23 124 chr21 13652210 13652339 -21255231 - LTR16A1 LTR ERVL 0 457 342 190 360 88 37 chr21 13652908 13653044 -21254526 - L2 LINE L2 -93 3179 3037 716 102 9 0 chr21 13653180 13653395 -21254175 - L1MA8 LINE L1 -4 6287 6028 25 0 0 0 chr21 13654150 13654175 -21253395 + AT_rich Low_complexity Low_complexity 1 25 0 225 286 0 0 chr21 13654403 13654459 -21253111 - L2 LINE L2 -1 3312 3257 26 50 0 0 chr21 13657045 13657085 -21250485 + AT_rich Low_complexity Low_complexity 1 40 0 2552 110 102 0 chr21 13657090 13657491 -21250079 - L1PB1 LINE L1 -1 6150 5709 279 273 65 39 chr21 13659048 13659202 -21248368 - L2 LINE L2 -1084 2230 2073 394 361 69 5 chr21 13659701 13659917 -21247653 - MIR SINE MIR 0 262 33 469 309 81 13 chr21 13660594 13660830 -21246740 + L2 LINE L2 2069 2320 -994 471 366 65 29 chr21 13660942 13661387 -21246183 + L2 LINE L2 2468 2928 -386 238 273 93 73 chr21 13664320 13664470 -21243100 + MIR SINE MIR 47 199 -63 328 284 70 56 chr21 13664474 13664689 -21242881 - L2 LINE L2 -19 3294 3077 30582 111 9 13 chr21 13665065 13666947 -21240623 + L1PA7 LINE L1 702 2590 -3879 207 0 0 0 chr21 13666947 13666970 -21240600 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 30582 111 9 13 chr21 13666970 13670788 -21236782 + L1PA7 LINE L1 2590 6465 -4 2111 97 0 52 chr21 13670788 13671097 -21236473 + AluSc SINE Alu 1 293 -16 402 308 78 59 chr21 13671290 13671663 -21235907 - L2 LINE L2 -803 2511 2132 18283 183 16 17 chr21 13671764 13677356 -21230214 + L1PA14 LINE L1 2002 7594 -5 1100 244 20 0 chr21 13677792 13678144 -21229426 + L1 LINE L1 3080 3438 -2708 977 225 55 18 chr21 13679330 13679572 -21227998 - MIR SINE MIR -10 252 4 616 147 0 66 chr21 13679659 13679795 -21227775 - Charlie5 DNA MER1_type -27 2585 2459 941 175 69 0 chr21 13679795 13679984 -21227586 + MLT2C2 LTR ERVL 1 202 -262 1767 154 17 30 chr21 13679997 13680296 -21227274 + AluJb SINE Alu 6 300 -12 1618 150 116 32 chr21 13680341 13680687 -21226883 - THE1C LTR MaLR 0 375 1 9539 125 22 36 chr21 13680687 13682287 -21225283 - THE1C-int LTR MaLR 0 1580 3 1872 143 63 33 chr21 13682289 13682653 -21224917 - THE1C LTR MaLR 0 375 1 955 239 133 48 chr21 13682653 13682983 -21224587 - MLT1A2 LTR MaLR -16 358 1 911 195 5 6 chr21 13682984 13683167 -21224403 + MLT2C2 LTR ERVL 243 393 -21 369 0 0 0 chr21 13683173 13683214 -21224356 + (TG)n Simple_repeat Simple_repeat 2 42 0 360 250 13 13 chr21 13683235 13683391 -21224179 + (CATATA)n Simple_repeat Simple_repeat 3 158 0 264 265 0 36 chr21 13683393 13683476 -21224094 + (TATATG)n Simple_repeat Simple_repeat 4 83 0 22 35 0 0 chr21 13683484 13683513 -21224057 + AT_rich Low_complexity Low_complexity 1 29 0 990 205 9 5 chr21 13683548 13683757 -21223813 - MER33 DNA MER1_type -251 73 1 363 295 123 0 chr21 13683874 13683996 -21223574 + MIR SINE MIR 106 242 -20 2199 0 0 0 chr21 13683996 13684240 -21223330 + L1HS LINE L1 5912 6155 0 984 234 39 96 chr21 13684890 13685382 -21222188 - MLT2C2 LTR ERVL 0 464 1 465 100 0 111 chr21 13685913 13686003 -21221567 - MADE1 DNA Mariner 0 80 1 1196 185 81 15 chr21 13686942 13687061 -21220509 + AluJo SINE Alu 2 112 -200 916 67 30 0 chr21 13687061 13687196 -21220374 + (GAAA)n Simple_repeat Simple_repeat 2 140 0 1196 185 81 15 chr21 13687196 13687335 -21220235 + AluJo SINE Alu 112 277 -35 1807 155 3 23 chr21 13687456 13687760 -21219810 - AluJb SINE Alu -14 298 1 383 282 100 0 chr21 13688047 13688157 -21219413 - L2 LINE L2 0 3313 3193 240 111 0 0 chr21 13688202 13688238 -21219332 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 221 0 35 0 chr21 13688352 13688381 -21219189 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 21 36 0 0 chr21 13688888 13688916 -21218654 + AT_rich Low_complexity Low_complexity 1 28 0 435 147 4 2 chr21 13689238 13689470 -21218100 + AluSx SINE Alu 1 290 -21 304 303 97 69 chr21 13690082 13690229 -21217341 + L1MB7 LINE L1 4941 5082 -1064 784 206 0 24 chr21 13690229 13690394 -21217176 + L1MC1 LINE L1 6171 6331 -2 304 303 97 69 chr21 13690394 13690596 -21216974 + L1MB7 LINE L1 5082 5300 -846 291 327 40 20 chr21 13690600 13690799 -21216771 + L1P4 LINE L1 5321 5523 -651 1752 121 111 7 chr21 13692173 13692453 -21215117 - AluSg1 SINE Alu 0 309 1 437 372 65 24 chr21 13692658 13692994 -21214576 - L1MC/D LINE L1 -2038 5770 5421 258 32 0 0 chr21 13693554 13693585 -21213985 + (TA)n Simple_repeat Simple_repeat 1 31 0 1362 200 19 91 chr21 13693850 13694225 -21213345 + MLT1A2 LTR MaLR 27 374 0 180 176 0 0 chr21 13695106 13695140 -21212430 + T-rich Low_complexity Low_complexity 1 34 0 1502 281 60 25 chr21 13696210 13696723 -21210847 + L2 LINE L2 2447 2977 -337 235 299 10 31 chr21 13697890 13697987 -21209583 + HAL1 LINE L1 812 906 -1601 336 121 69 0 chr21 13698070 13698128 -21209442 + MLT1A1 LTR MaLR 304 365 0 2429 130 5 13 chr21 13698133 13698511 -21209059 + THE1C LTR MaLR 1 375 0 2062 191 62 5 chr21 13698755 13699204 -21208366 + L1MB7 LINE L1 5524 5998 -186 445 356 11 0 chr21 13699487 13699661 -21207909 - L1ME LINE L1 -481 5640 5465 1630 230 76 29 chr21 13700073 13700521 -21207049 - MLT1E2 LTR MaLR -12 614 146 2787 74 0 0 chr21 13700619 13700984 -21206586 - L1PA7 LINE L1 -5 6149 5785 333 261 97 92 chr21 13701016 13701254 -21206316 + L1ME4a LINE L1 5616 5854 -267 418 172 126 0 chr21 13701276 13701363 -21206207 - U13 snRNA snRNA -6 98 1 650 139 104 0 chr21 13702219 13702334 -21205236 - MLT1A2 LTR MaLR -244 130 4 594 239 161 0 chr21 13703226 13703381 -21204189 + MER5A DNA MER1_type 9 188 -1 1629 175 48 40 chr21 13703710 13704082 -21203488 + THE1C LTR MaLR 1 375 0 9425 134 25 36 chr21 13704088 13705660 -21201910 + THE1C-int LTR MaLR 21 1574 -6 1772 155 82 25 chr21 13705665 13706020 -21201550 + THE1C LTR MaLR 1 375 0 285 254 14 0 chr21 13706037 13706108 -21201462 + MLT2E LTR ERVL 557 628 0 305 385 35 35 chr21 13706497 13706757 -21200813 + L2 LINE L2 2820 3079 -193 2541 126 26 35 chr21 13707023 13707413 -21200157 + MSTA LTR MaLR 1 388 -40 2132 128 7 0 chr21 13707413 13707710 -21199860 - AluSx SINE Alu -13 299 1 2541 126 26 35 chr21 13707710 13707747 -21199823 + MSTA LTR MaLR 388 424 -4 1646 170 29 0 chr21 13707887 13708163 -21199407 + AluJb SINE Alu 1 284 -28 1684 232 93 73 chr21 13708176 13709135 -21198435 + L1M4 LINE L1 3496 4473 -1673 6498 153 35 17 chr21 13709187 13711353 -21196217 - L1MA7 LINE L1 0 6291 4082 5709 226 22 14 chr21 13711694 13714015 -21193555 + L1M2 LINE L1 1369 3709 -3139 925 153 0 25 chr21 13714015 13714172 -21193398 + AluSq SINE Alu 1 153 -160 993 85 0 0 chr21 13714196 13714326 -21193244 - THE1B LTR MaLR -28 336 207 1152 148 107 0 chr21 13714326 13714522 -21193048 + AluSg/x SINE Alu 86 302 -8 11287 164 38 15 chr21 13714531 13716963 -21190607 + L1M2 LINE L1 3709 6199 -743 203 175 25 0 chr21 13717011 13717051 -21190519 + GA-rich Low_complexity Low_complexity 2 42 0 254 278 120 38 chr21 13717112 13717245 -21190325 + L2 LINE L2 3104 3247 -25 225 184 20 20 chr21 13717245 13717294 -21190276 + GA-rich Low_complexity Low_complexity 4 52 0 1659 79 0 0 chr21 13717896 13718099 -21189471 - AluY SINE Alu -108 203 1 914 26 9 0 chr21 13718974 13719087 -21188483 + (TAGA)n Simple_repeat Simple_repeat 1 114 0 764 291 134 34 chr21 13720347 13720894 -21186676 - L2 LINE L2 -2 3311 2698 184 393 0 0 chr21 13721850 13721911 -21185659 + MIR SINE MIR 47 107 -155 345 254 112 24 chr21 13721915 13722121 -21185449 - MIR SINE MIR -3 259 6 874 205 27 9 chr21 13723121 13723345 -21184225 - L1MA7 LINE L1 -7 6284 6057 778 192 91 5 chr21 13723494 13723681 -21183889 + L1ME3A LINE L1 5665 5867 -303 2185 100 4 0 chr21 13723789 13724068 -21183502 + AluSp SINE Alu 1 280 -33 782 260 30 25 chr21 13724087 13724322 -21183248 + L1ME3A LINE L1 5933 6168 -2 4791 118 20 1 chr21 13724335 13724448 -21183122 + L1PA16 LINE L1 5374 5483 -683 2330 88 3 10 chr21 13724448 13724755 -21182815 + AluSp SINE Alu 1 305 -8 4791 118 20 1 chr21 13724755 13725372 -21182198 + L1PA16 LINE L1 5483 6118 -48 259 291 0 35 chr21 13725372 13725458 -21182112 - MIR SINE MIR -2 260 178 583 284 7 0 chr21 13725601 13725749 -21181821 + MIR SINE MIR 104 252 -10 415 241 146 19 chr21 13726186 13726344 -21181226 + MIR SINE MIR 69 246 -16 2463 90 0 0 chr21 13726376 13726688 -21180882 + AluSx SINE Alu 1 312 0 1850 144 10 24 chr21 13727719 13728010 -21179560 + AluJo SINE Alu 11 297 -15 1772 309 24 5 chr21 13729146 13729734 -21177836 + MER115 DNA AcHobo 65 663 -30 5896 79 6 6 chr21 13729890 13730728 -21176842 + L1PA11 LINE L1 5334 6171 -3 1313 182 51 91 chr21 13731354 13731728 -21175842 - MLT1A1 LTR MaLR -6 359 1 551 276 117 35 chr21 13731733 13732183 -21175387 + MLT1G1 LTR MaLR 40 547 -8 1657 128 19 0 chr21 13733087 13733344 -21174226 - THE1C LTR MaLR 0 375 114 897 67 7 0 chr21 13733373 13733508 -21174062 - THE1C-int LTR MaLR 0 1580 1445 1867 124 32 39 chr21 13733511 13733849 -21173721 - THE1B LTR MaLR -28 336 1 276 253 0 13 chr21 13734709 13734784 -21172786 + LTR33 LTR ERVL 48 121 -400 1798 132 57 49 chr21 13734790 13735160 -21172410 + THE1C LTR MaLR 1 373 -2 1553 191 33 68 chr21 13735412 13735841 -21171729 + MLT2D LTR ERVL 1 414 0 1625 165 4 4 chr21 13736159 13736420 -21171150 + AluJo SINE Alu 28 288 -24 24 67 0 0 chr21 13737089 13737134 -21170436 + AT_rich Low_complexity Low_complexity 1 45 0 897 225 11 11 chr21 13738975 13739166 -21168404 - MIR SINE MIR -5 257 67 513 241 18 0 chr21 13739729 13739841 -21167729 - MER81 DNA DNA 0 114 1 473 309 49 34 chr21 13739864 13740114 -21167456 + MIR SINE MIR 3 259 -3 25 90 0 0 chr21 13740653 13740720 -21166850 + AT_rich Low_complexity Low_complexity 1 67 0 27 0 0 0 chr21 13741408 13741435 -21166135 + AT_rich Low_complexity Low_complexity 1 27 0 192 77 0 0 chr21 13742797 13742823 -21164747 + (A)n Simple_repeat Simple_repeat 1 26 0 1866 125 57 4 chr21 13742840 13743120 -21164450 + AluJo SINE Alu 6 300 -12 189 0 0 0 chr21 13743120 13743141 -21164429 + (TA)n Simple_repeat Simple_repeat 1 21 0 1816 185 39 59 chr21 13743793 13744301 -21163269 + MLT1D LTR MaLR 1 498 -7 39 50 0 0 chr21 13744563 13744623 -21162947 + AT_rich Low_complexity Low_complexity 1 60 0 2403 135 70 2 chr21 13744913 13745314 -21162256 - MSTA LTR MaLR 0 428 1 270 376 8 45 chr21 13745504 13745637 -21161933 + L2 LINE L2 3145 3272 0 1925 239 28 50 chr21 13745892 13745932 -21161638 - MLT2B3 LTR ERVL 0 554 515 441 0 0 0 chr21 13745932 13745981 -21161589 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 1925 239 28 50 chr21 13745981 13746506 -21161064 - MLT2B3 LTR ERVL -39 515 1 2430 208 58 44 chr21 13746887 13747273 -21160297 - MLT1E2 LTR MaLR 0 626 226 180 0 0 0 chr21 13747273 13747293 -21160277 + (CTG)n Simple_repeat Simple_repeat 3 22 0 2430 208 58 44 chr21 13747293 13747523 -21160047 - MLT1E2 LTR MaLR -400 226 1 493 151 47 0 chr21 13748183 13748289 -21159281 + L1MA9 LINE L1 6161 6271 -41 22 35 0 0 chr21 13748296 13748325 -21159245 + AT_rich Low_complexity Low_complexity 1 29 0 35 41 0 0 chr21 13748938 13748987 -21158583 + AT_rich Low_complexity Low_complexity 1 49 0 21 57 0 0 chr21 13749275 13749310 -21158260 + AT_rich Low_complexity Low_complexity 1 35 0 22300 118 15 4 chr21 13749463 13754416 -21153154 + L1M1 LINE L1 18 4914 -2810 461 84 0 158 chr21 13754416 13754511 -21153059 - MADE1 DNA Mariner 0 80 1 22300 118 15 4 chr21 13754511 13754859 -21152711 + L1M1 LINE L1 4914 5257 -2467 2236 113 7 0 chr21 13754859 13755161 -21152409 + AluSg1 SINE Alu 3 306 -3 22300 118 15 4 chr21 13755161 13756835 -21150735 + L1M1 LINE L1 5257 7177 -547 355 335 66 55 chr21 13756909 13757231 -21150339 + L2 LINE L2 1570 1900 -1414 2232 131 0 3 chr21 13757231 13757544 -21150026 - AluSx SINE Alu 0 312 1 355 335 66 55 chr21 13757544 13757674 -21149896 + L2 LINE L2 1900 2027 -1287 449 254 0 0 chr21 13757774 13757888 -21149682 - L1ME LINE L1 -450 5671 5558 413 282 83 80 chr21 13758006 13758087 -21149483 + L2 LINE L2 2033 2112 -1202 1820 131 60 0 chr21 13758087 13758369 -21149201 + AluSx SINE Alu 2 300 -12 413 282 83 80 chr21 13758369 13758648 -21148922 + L2 LINE L2 2112 2394 -920 22 56 0 0 chr21 13759288 13759324 -21148246 + AT_rich Low_complexity Low_complexity 1 36 0 184 271 85 0 chr21 13759353 13759412 -21148158 - L3 LINE CR1 -323 1254 1191 277 370 27 27 chr21 13759856 13760002 -21147568 - L2 LINE L2 0 3272 3127 379 208 83 0 chr21 13760338 13760434 -21147136 - MLT1D LTR MaLR 0 505 402 743 229 33 53 chr21 13760541 13760786 -21146784 - MLT1D LTR MaLR -261 244 5 834 237 93 22 chr21 13760794 13761064 -21146506 + L2 LINE L2 2626 2914 -400 1524 223 31 80 chr21 13761084 13761623 -21145947 + MLT2B1 LTR ERVL 1 513 -7 257 239 0 42 chr21 13761626 13761697 -21145873 + L2 LINE L2 3152 3219 -94 7049 41 17 46 chr21 13761699 13762664 -21144906 - L1PA7 LINE L1 0 6154 5198 3611 194 50 49 chr21 13762664 13763617 -21143953 - LTR13 LTR ERVK 0 954 1 7049 41 17 46 chr21 13763617 13763750 -21143820 - L1PA7 LINE L1 -956 5198 5063 276 269 0 67 chr21 13763750 13763854 -21143716 + L2 LINE L2 3168 3264 -8 2430 72 0 0 chr21 13764329 13764622 -21142948 + AluSp SINE Alu 1 293 -20 362 239 0 83 chr21 13765501 13765519 -21142051 + HAL1 LINE L1 766 784 -1723 2543 216 10 6 chr21 13765519 13765959 -21141611 + MLT2B2 LTR ERVL 4 448 -67 246 32 0 0 chr21 13765959 13765990 -21141580 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2543 216 10 6 chr21 13765990 13766059 -21141511 + MLT2B2 LTR ERVL 448 515 0 362 239 0 83 chr21 13766059 13766149 -21141421 + HAL1 LINE L1 784 865 -1642 1021 286 94 75 chr21 13766574 13767154 -21140416 + HAL1 LINE L1 982 1579 -928 1062 222 18 14 chr21 13767154 13767375 -21140195 + MER58A DNA MER1_type 2 223 -1 1021 286 94 75 chr21 13767375 13767483 -21140087 + HAL1 LINE L1 1579 1683 -824 1086 278 26 13 chr21 13768253 13768638 -21138932 - L1ME LINE L1 -4576 2249 1860 520 97 0 0 chr21 13768660 13768732 -21138838 - Alu SINE Alu -8 303 232 970 129 0 14 chr21 13768732 13768871 -21138699 - AluSq/x SINE Alu -172 141 5 1371 217 69 64 chr21 13768885 13769565 -21138005 - L1ME LINE L1 -4870 1672 1014 2366 208 52 46 chr21 13770066 13771121 -21136449 + LTR27 LTR ERV1 3 1709 -46 37 0 0 0 chr21 13771270 13771307 -21136263 + AT_rich Low_complexity Low_complexity 1 37 0 189 74 0 0 chr21 13771727 13771754 -21135816 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 534 242 42 0 chr21 13771897 13772017 -21135553 + L2 LINE L2 3189 3313 0 959 255 47 4 chr21 13772644 13772899 -21134671 + L1MC/D LINE L1 5393 5658 -2150 1570 186 45 45 chr21 13772903 13773300 -21134270 + MLT2C1 LTR ERVL 1 397 0 21 0 0 0 chr21 13773424 13773445 -21134125 + AT_rich Low_complexity Low_complexity 1 21 0 261 226 32 0 chr21 13773624 13773686 -21133884 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 208 255 0 0 chr21 13773720 13773767 -21133803 + A-rich Low_complexity Low_complexity 4 50 0 991 155 11 11 chr21 13774167 13774348 -21133222 + L1MA9 LINE L1 5901 6081 -231 415 168 80 35 chr21 13774341 13774454 -21133116 + L1MA7 LINE L1 6167 6284 -7 23 68 0 0 chr21 13774454 13774498 -21133072 + AT_rich Low_complexity Low_complexity 1 44 0 2460 144 38 17 chr21 13774564 13774981 -21132589 - MSTB LTR MaLR 0 426 1 8727 169 16 17 chr21 13774994 13776223 -21131347 - MSTB-int LTR MaLR -14 1637 408 2047 144 6 10 chr21 13776223 13776535 -21131035 - AluSx SINE Alu 0 312 2 8727 169 16 17 chr21 13776535 13776942 -21130628 - MSTB-int LTR MaLR -1243 408 2 2150 144 72 10 chr21 13776950 13777340 -21130230 - MSTB LTR MaLR -12 414 1 1665 181 97 50 chr21 13777464 13777939 -21129631 - MLT1D LTR MaLR -6 499 3 465 19 0 0 chr21 13778496 13778550 -21129020 + (CA)n Simple_repeat Simple_repeat 2 55 0 948 226 16 27 chr21 13779201 13779458 -21128112 - MLT2B1 LTR ERVL -266 254 1 189 0 0 0 chr21 13779785 13779806 -21127764 + (TG)n Simple_repeat Simple_repeat 2 22 0 1732 190 7 7 chr21 13779865 13780165 -21127405 + AluJb SINE Alu 1 300 -12 2293 149 22 19 chr21 13780920 13781336 -21126234 - MSTB LTR MaLR -9 417 1 326 361 61 11 chr21 13782132 13782312 -21125258 - L2 LINE L2 -407 2907 2719 2639 115 44 5 chr21 13782711 13783121 -21124449 - MSTA LTR MaLR 0 428 3 1602 203 3 32 chr21 13783487 13783797 -21123773 + AluJo SINE Alu 1 301 -11 1340 203 62 62 chr21 13784716 13785106 -21122464 + MLT1B LTR MaLR 1 390 0 3305 237 39 21 chr21 13785110 13786325 -21121245 + MLT1B-int LTR MaLR 5 1264 -107 814 124 23 4 chr21 13786438 13786583 -21120987 + L1PA16 LINE L1 5737 5879 -287 794 172 128 65 chr21 13786590 13786910 -21120660 + MLT1A2 LTR MaLR 43 467 0 5430 131 17 16 chr21 13787056 13787921 -21119649 + L1PA16 LINE L1 5077 5944 -222 1858 124 62 4 chr21 13787921 13788195 -21119375 + AluSx SINE Alu 1 290 -22 5430 131 17 16 chr21 13788195 13788414 -21119156 + L1PA16 LINE L1 5944 6161 -5 1392 155 5 112 chr21 13789971 13790346 -21117224 - MLT1B LTR MaLR -2 388 54 368 77 0 154 chr21 13790386 13790464 -21117106 - MLT1B LTR MaLR -324 66 1 2115 99 13 32 chr21 13790536 13790849 -21116721 - AluY SINE Alu -4 307 1 217 291 126 55 chr21 13790855 13790898 -21116672 - MIR SINE MIR -50 212 173 1339 217 36 56 chr21 13790898 13791289 -21116281 - MLT1B LTR MaLR -4 386 4 217 291 126 55 chr21 13791289 13791372 -21116198 - MIR SINE MIR -89 173 77 910 235 37 49 chr21 13791770 13792013 -21115557 + MIR SINE MIR 22 261 -1 286 258 0 0 chr21 13794194 13794256 -21113314 - MIR SINE MIR -66 142 81 225 83 0 0 chr21 13795093 13795129 -21112441 + (A)n Simple_repeat Simple_repeat 1 36 0 198 143 0 0 chr21 13795999 13796034 -21111536 + MIR SINE MIR 110 144 -118 238 279 49 0 chr21 13796041 13796102 -21111468 + L3 LINE CR1 1512 1575 -2 661 302 28 12 chr21 13797076 13797324 -21110246 + MIR SINE MIR 11 262 0 687 257 51 14 chr21 13797797 13798011 -21109559 - MIR SINE MIR -1 261 40 370 332 63 10 chr21 13798017 13798222 -21109348 - L1MC4 LINE L1 -44 7998 7783 23 33 0 0 chr21 13799351 13799381 -21108189 + AT_rich Low_complexity Low_complexity 1 30 0 459 184 14 75 chr21 13801895 13802042 -21105528 + L1MB3 LINE L1 6044 6181 -2 2231 104 0 10 chr21 13802165 13802462 -21105108 - AluSg SINE Alu -16 294 1 198 0 0 0 chr21 13803268 13803290 -21104280 + (TA)n Simple_repeat Simple_repeat 2 23 0 332 257 125 37 chr21 13805896 13806032 -21101538 + MIR SINE MIR 48 195 -67 2174 132 0 0 chr21 13806654 13806950 -21100620 + AluSx SINE Alu 1 296 -16 403 267 89 14 chr21 13807202 13807348 -21100222 + MIR SINE MIR 90 246 -16 372 119 0 0 chr21 13807639 13807698 -21099872 + (TG)n Simple_repeat Simple_repeat 2 60 0 206 31 0 31 chr21 13808214 13808246 -21099324 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2326 84 0 7 chr21 13808253 13808550 -21099020 - AluSx SINE Alu -17 295 1 358 257 66 72 chr21 13809018 13809170 -21098400 - MER5A DNA MER1_type -32 157 7 39 50 0 0 chr21 13810211 13810271 -21097299 + AT_rich Low_complexity Low_complexity 1 60 0 234 0 0 0 chr21 13810909 13810935 -21096635 + (A)n Simple_repeat Simple_repeat 1 26 0 387 286 19 44 chr21 13810973 13811179 -21096391 + L1M4 LINE L1 2343 2543 -3603 352 239 164 0 chr21 13811199 13811333 -21096237 + L1MB7 LINE L1 2202 2357 -3789 2326 85 3 0 chr21 13811333 13811626 -21095944 - AluY SINE Alu -17 294 1 2417 80 0 0 chr21 13811880 13812179 -21095391 + AluSq SINE Alu 1 299 -14 250 248 7 66 chr21 13812191 13812328 -21095242 + L1MB7 LINE L1 4906 5034 -1112 2375 104 0 3 chr21 13812502 13812810 -21094760 - AluSx SINE Alu -5 307 1 1889 154 0 33 chr21 13812845 13813151 -21094419 + AluSx SINE Alu 1 296 -16 205 50 50 25 chr21 13813152 13813192 -21094378 + (TA)n Simple_repeat Simple_repeat 2 42 0 369 0 0 0 chr21 13813192 13813233 -21094337 + (CA)n Simple_repeat Simple_repeat 2 42 0 293 237 49 18 chr21 13813399 13813519 -21094051 + L1MB7 LINE L1 5483 5608 -562 347 359 50 3 chr21 13813558 13813847 -21093723 + L1MB7 LINE L1 5668 5926 -258 465 297 97 28 chr21 13814206 13814496 -21093074 - LTR67 LTR ERVL -246 311 2 362 279 60 60 chr21 13815054 13815402 -21092168 + HAL1 LINE L1 735 1082 -1425 813 278 87 46 chr21 13815419 13816028 -21091542 + HAL1 LINE L1 1153 1786 -721 309 321 102 22 chr21 13816360 13816497 -21091073 + MIR SINE MIR 111 258 -4 30 45 0 0 chr21 13816814 13816858 -21090712 + AT_rich Low_complexity Low_complexity 1 44 0 231 217 24 96 chr21 13817630 13817713 -21089857 + L2 LINE L2 2686 2762 -552 434 343 85 33 chr21 13817916 13818187 -21089383 + L2 LINE L2 2987 3271 -1 23 0 0 0 chr21 13818405 13818428 -21089142 + AT_rich Low_complexity Low_complexity 1 23 0 2310 93 0 3 chr21 13819189 13819491 -21088079 + AluY SINE Alu 1 301 -10 267 54 0 0 chr21 13820236 13820273 -21087297 + AluSg/x SINE Alu 194 230 -72 1045 73 0 0 chr21 13820581 13820705 -21086865 - AluSg/x SINE Alu -16 294 171 802 286 40 43 chr21 13820970 13821442 -21086128 - L2 LINE L2 -385 2929 2432 1580 95 41 0 chr21 13821442 13821663 -21085907 + MER30 DNA MER1_type 1 230 0 802 286 40 43 chr21 13821663 13821734 -21085836 - L2 LINE L2 -882 2432 2362 4944 181 34 41 chr21 13821739 13823566 -21084004 + L1MD1 LINE L1 4432 6241 -1 471 288 57 81 chr21 13825164 13825399 -21082171 + L2 LINE L2 1783 2022 -1292 1879 166 19 3 chr21 13825399 13825706 -21081864 - AluJo SINE Alu 0 312 1 471 288 57 81 chr21 13825706 13826201 -21081369 + L2 LINE L2 2022 2557 -757 229 284 164 0 chr21 13826203 13826270 -21081300 + MIR SINE MIR 2 79 -183 989 184 82 4 chr21 13826739 13826994 -21080576 + MER33 DNA MER1_type 46 320 -4 2558 44 0 0 chr21 13827260 13827557 -21080013 - AluY SINE Alu -14 297 1 837 164 0 22 chr21 13829479 13829613 -21077957 + FLAM_A SINE Alu 1 131 -2 286 236 45 11 chr21 13829786 13829875 -21077695 + CT-rich Low_complexity Low_complexity 3 94 0 360 103 0 0 chr21 13830789 13830847 -21076723 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 1991 113 0 0 chr21 13831312 13831577 -21075993 + AluSx SINE Alu 40 304 -8 21 0 0 0 chr21 13831732 13831753 -21075817 + AT_rich Low_complexity Low_complexity 1 21 0 2353 74 0 3 chr21 13831985 13832282 -21075288 + AluY SINE Alu 1 296 -15 26 30 0 0 chr21 13832631 13832664 -21074906 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr21 13832966 13832987 -21074583 + AT_rich Low_complexity Low_complexity 1 21 0 972 262 26 0 chr21 13833428 13833657 -21073913 + MIR SINE MIR 28 262 0 199 152 0 0 chr21 13833687 13833720 -21073850 - L2 LINE L2 -9 3304 3272 1699 150 133 26 chr21 13834016 13834355 -21073215 + THE1C LTR MaLR 1 375 0 1247 134 0 0 chr21 13835261 13835440 -21072130 + AluSg/x SINE Alu 124 302 -8 22 0 0 0 chr21 13835746 13835768 -21071802 + AT_rich Low_complexity Low_complexity 1 22 0 452 260 24 24 chr21 13835903 13836026 -21071544 + L2 LINE L2 3147 3269 -3 1024 162 132 17 chr21 13836809 13837043 -21070527 + AluJo SINE Alu 27 287 -25 720 113 56 63 chr21 13837271 13837413 -21070157 - AluJo SINE Alu -145 167 27 353 238 48 0 chr21 13839302 13839386 -21068184 + L2 LINE L2 3211 3298 -15 198 0 0 0 chr21 13839388 13839410 -21068160 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 2921 255 62 38 chr21 13840381 13841553 -21066017 + L1MC4 LINE L1 6843 8042 0 505 281 69 62 chr21 13841564 13841824 -21065746 - MLT1I LTR MaLR -50 359 98 1572 194 71 14 chr21 13841935 13842218 -21065352 + AluJb SINE Alu 2 300 -2 434 261 31 62 chr21 13842877 13843038 -21064532 - LTR16B LTR ERVL -291 173 18 240 111 0 0 chr21 13843277 13843313 -21064257 + (TA)n Simple_repeat Simple_repeat 1 36 0 7226 62 29 0 chr21 13843313 13844656 -21062914 - L1PA6 LINE L1 -19 6135 4773 279 0 0 0 chr21 13844711 13844742 -21062828 + (TG)n Simple_repeat Simple_repeat 1 31 0 305 272 61 54 chr21 13845081 13845228 -21062342 - MIR3 SINE MIR -7 201 54 2562 44 0 25 chr21 13845296 13845672 -21061898 + AluY SINE Alu 1 368 0 339 25 0 0 chr21 13846289 13846329 -21061241 + (TC)n Simple_repeat Simple_repeat 2 41 0 430 270 36 15 chr21 13846358 13846495 -21061075 - L1MC/D LINE L1 -2101 5707 5568 2554 213 32 41 chr21 13847671 13848858 -21058712 + L1MB8 LINE L1 3064 5657 -527 938 120 0 0 chr21 13848869 13848994 -21058576 + FLAM_C SINE Alu 12 136 -7 2943 167 15 9 chr21 13848994 13849520 -21058050 + L1MB8 LINE L1 5650 6178 0 592 314 67 5 chr21 13849696 13849919 -21057651 + MIR SINE MIR 23 259 -3 2390 158 84 46 chr21 13850223 13850724 -21056846 - MLT2B1 LTR ERVL 0 520 1 3053 137 34 60 chr21 13850725 13851322 -21056248 - ERVL-B1 LTR ERVL -8 5756 5176 922 133 7 0 chr21 13851330 13851465 -21056105 - AluJo SINE Alu -176 136 1 13191 150 18 15 chr21 13851466 13852919 -21054651 - ERVL-B1 LTR ERVL -574 5190 3728 1907 132 7 0 chr21 13852919 13853200 -21054370 - AluJo SINE Alu 0 312 30 13191 150 18 15 chr21 13853200 13853849 -21053721 - ERVL-B1 LTR ERVL -2036 3728 3082 495 168 0 84 chr21 13853846 13853965 -21053605 - ERVL LTR ERVL -4879 885 777 646 215 79 44 chr21 13854409 13854637 -21052933 - MER106A DNA MER1_type 0 236 1 457 221 250 0 chr21 13854786 13854926 -21052644 + MER5A DNA MER1_type 15 189 0 203 217 14 58 chr21 13854864 13854933 -21052637 - MER5A DNA MER1_type -116 73 8 2311 148 11 8 chr21 13855644 13856003 -21051567 + MLT1A1 LTR MaLR 1 360 -5 2224 101 0 7 chr21 13856688 13856976 -21050594 + AluSx SINE Alu 1 286 -26 2209 119 3 0 chr21 13857151 13857446 -21050124 + AluSx SINE Alu 1 296 -16 1918 153 0 10 chr21 13857466 13857754 -21049816 + AluSx SINE Alu 4 288 -24 288 355 43 14 chr21 13859375 13859516 -21048054 + MIR3 SINE MIR 3 147 -61 252 316 0 51 chr21 13859668 13859785 -21047785 - L2 LINE L2 0 3313 3203 734 133 0 0 chr21 13860055 13860160 -21047410 - MLT1A2 LTR MaLR 0 374 270 1693 186 22 16 chr21 13860168 13860319 -21047251 - MLT1A1 LTR MaLR -26 339 190 1636 184 31 0 chr21 13860319 13860607 -21046963 - AluJb SINE Alu -14 298 2 1693 186 22 16 chr21 13860607 13860778 -21046792 - MLT1A1 LTR MaLR -175 190 15 560 280 31 31 chr21 13860779 13860972 -21046598 + MIR SINE MIR 70 262 0 215 267 191 15 chr21 13861211 13861342 -21046228 + L2 LINE L2 2929 3082 -231 1756 213 13 43 chr21 13862238 13862459 -21045111 - MLT1A1 LTR MaLR 0 365 158 2172 137 0 3 chr21 13862459 13862772 -21044798 - AluSx SINE Alu 0 312 1 1756 213 13 43 chr21 13862772 13862926 -21044644 - MLT1A1 LTR MaLR -207 158 1 391 282 84 7 chr21 13862926 13863068 -21044502 + MIR SINE MIR 14 166 -96 2185 136 0 0 chr21 13863158 13863459 -21044111 - AluSx SINE Alu -11 301 1 317 319 0 0 chr21 13863790 13863881 -21043689 + MIR SINE MIR 54 144 -64 2331 81 0 0 chr21 13864156 13864441 -21043129 + AluSx SINE Alu 20 304 -8 2333 91 3 0 chr21 13864817 13865113 -21042457 + AluSx SINE Alu 1 297 -15 1762 184 83 54 chr21 13865805 13866250 -21041320 + MER31B LTR ERV1 5 462 -4 4870 115 13 16 chr21 13866260 13866953 -21040617 + LTR8 LTR ERV1 1 691 0 722 132 46 46 chr21 13866953 13867094 -21040476 + L1MA4 LINE L1 6157 6300 0 23 0 0 0 chr21 13867094 13867117 -21040453 + AT_rich Low_complexity Low_complexity 1 23 0 194 255 0 21 chr21 13867496 13867543 -21040027 - MER5A DNA MER1_type -22 167 122 246 368 81 22 chr21 13867847 13868119 -21039451 + L2 LINE L2 2420 2707 -607 2135 113 3 23 chr21 13868269 13868579 -21038991 + AluSx SINE Alu 1 304 -8 449 248 20 0 chr21 13868978 13869079 -21038491 + MIR SINE MIR 87 189 -73 257 277 72 0 chr21 13869193 13869276 -21038294 + L2 LINE L2 3137 3225 -47 252 111 0 0 chr21 13869789 13869834 -21037736 + (CAAAAA)n Simple_repeat Simple_repeat 4 48 0 393 198 26 0 chr21 13871896 13872012 -21035558 + CT-rich Low_complexity Low_complexity 2 120 0 3738 169 76 39 chr21 13872778 13873565 -21034005 - L1MC3 LINE L1 -20 7765 6950 1686 156 90 0 chr21 13873961 13874282 -21033288 - MLT1A1 LTR MaLR 0 365 16 1746 176 77 57 chr21 13875394 13875889 -21031681 - MLT1D LTR MaLR 0 505 1 243 0 0 0 chr21 13876026 13876053 -21031517 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2150 116 0 0 chr21 13876055 13876340 -21031230 - AluSx SINE Alu -27 285 1 359 214 61 68 chr21 13876375 13876543 -21031027 + MIR SINE MIR 26 190 -71 345 307 42 30 chr21 13876549 13876715 -21030855 - L2 LINE L2 -544 2770 2603 3022 140 92 0 chr21 13876812 13877138 -21030432 - MER7C DNA MER2_type -2435 593 298 203 61 30 0 chr21 13877138 13877171 -21030399 + (TGAG)n Simple_repeat Simple_repeat 1 34 0 3022 140 92 0 chr21 13877171 13877387 -21030183 - MER7C DNA MER2_type -2730 298 1 285 98 0 0 chr21 13877731 13877772 -21029798 + (GA)n Simple_repeat Simple_repeat 1 41 0 2230 116 0 0 chr21 13879088 13879381 -21028189 + AluSx SINE Alu 1 293 -19 273 29 0 0 chr21 13879603 13879637 -21027933 + (TG)n Simple_repeat Simple_repeat 2 35 0 2545 119 3 13 chr21 13880371 13880749 -21026821 - THE1C LTR MaLR -1 374 1 1054 239 41 88 chr21 13880900 13881364 -21026206 - MSTB2 LTR MaLR 0 457 16 314 87 0 0 chr21 13881439 13881485 -21026085 + MADE1 DNA Mariner 2 47 -33 383 320 55 40 chr21 13881911 13882183 -21025387 + L1MC4a LINE L1 4743 5018 -1128 201 39 0 0 chr21 13882221 13882247 -21025323 + (A)n Simple_repeat Simple_repeat 1 26 0 746 250 91 96 chr21 13882386 13883065 -21024505 + L1MC4a LINE L1 5258 5933 -1875 317 216 82 82 chr21 13883113 13883263 -21024307 + L1MC4a LINE L1 6074 6226 -1582 1641 197 6 25 chr21 13883263 13883578 -21023992 + AluJo SINE Alu 1 309 -3 317 216 82 82 chr21 13883578 13883621 -21023949 + L1MC4a LINE L1 6225 6267 -1541 599 332 4 24 chr21 13884419 13884560 -21023010 + L1MC4 LINE L1 6755 6890 -1152 2048 125 31 55 chr21 13884560 13884944 -21022626 - THE1C LTR MaLR 0 375 1 599 332 4 24 chr21 13884944 13885055 -21022515 + L1MC4 LINE L1 6890 7002 -1040 236 222 87 87 chr21 13885169 13885421 -21022149 + L1MC5 LINE L1 6972 7223 -738 2290 116 3 0 chr21 13885526 13885829 -21021741 + AluSx SINE Alu 1 304 -8 404 269 126 77 chr21 13885830 13886283 -21021287 + L1MC5 LINE L1 7259 7733 -228 189 0 0 0 chr21 13886510 13886531 -21021039 + (T)n Simple_repeat Simple_repeat 1 21 0 2136 93 0 48 chr21 13886643 13886955 -21020615 - AluSx SINE Alu -15 297 1 896 159 0 14 chr21 13888328 13888473 -21019097 - AluJo SINE Alu -169 143 1 22 0 0 0 chr21 13889474 13889496 -21018074 + AT_rich Low_complexity Low_complexity 1 22 0 1981 110 23 17 chr21 13891079 13891379 -21016191 - AluSx SINE Alu -10 302 1 857 235 37 53 chr21 13891563 13891886 -21015684 + MER20B DNA MER1_type 1 318 -466 216 0 0 0 chr21 13891919 13891943 -21015627 + (TA)n Simple_repeat Simple_repeat 2 25 0 2286 108 16 3 chr21 13891943 13892250 -21015320 - AluSx SINE Alu -1 311 1 1647 188 3 35 chr21 13892332 13892646 -21014924 + AluJo SINE Alu 3 306 -6 542 130 93 89 chr21 13892655 13892901 -21014669 + MER20B DNA MER1_type 535 781 -3 1678 177 7 13 chr21 13893298 13893608 -21013962 - AluJo SINE Alu -4 308 1 1057 173 0 0 chr21 13893611 13893779 -21013791 - FRAM SINE Alu -10 166 1 22 56 0 0 chr21 13893863 13893899 -21013671 + AT_rich Low_complexity Low_complexity 1 36 0 2861 131 0 18 chr21 13894578 13895014 -21012556 + MSTC LTR MaLR 1 428 0 266 316 33 26 chr21 13895022 13895174 -21012396 + L2 LINE L2 1527 1679 -1635 459 327 86 44 chr21 13895204 13895371 -21012199 + L2 LINE L2 1745 1904 -1410 2058 120 0 0 chr21 13895371 13895693 -21011877 - AluSg SINE Alu 0 322 1 459 327 86 44 chr21 13895693 13895863 -21011707 + L2 LINE L2 1904 2097 -1217 365 225 36 45 chr21 13895907 13896018 -21011552 - MER103 DNA DNA -36 130 21 1322 201 102 20 chr21 13896672 13896919 -21010651 - MLT2D LTR ERVL -40 480 255 2042 142 3 0 chr21 13896919 13897221 -21010349 + AluSx SINE Alu 2 304 -8 1322 201 102 20 chr21 13897221 13897326 -21010244 - MLT2D LTR ERVL -265 255 1 1526 86 0 0 chr21 13897475 13897698 -21009872 - AluSg/x SINE Alu 0 307 85 1830 160 24 0 chr21 13897699 13897987 -21009583 - AluJb SINE Alu -15 297 3 3067 154 36 1 chr21 13898228 13898842 -21008728 + MER44D DNA MER2_type 4 705 0 1922 256 110 36 chr21 13898877 13899784 -21007786 - L2 LINE L2 -1 3312 2364 488 288 66 10 chr21 13899830 13900077 -21007493 - L2 LINE L2 -1017 2297 1966 1992 154 6 3 chr21 13900250 13900561 -21007009 + AluJb SINE Alu 1 312 0 407 315 135 5 chr21 13900706 13900909 -21006661 - MIR SINE MIR -1 261 35 1846 145 3 20 chr21 13901361 13901665 -21005905 + AluJo SINE Alu 1 299 -13 333 200 107 100 chr21 13902465 13902605 -21004965 - MER69 DNA AcHobo -2379 147 7 2270 110 0 10 chr21 13902659 13902967 -21004603 - AluSx SINE Alu -6 306 2 801 189 0 0 chr21 13903275 13903407 -21004163 - FLAM_A SINE Alu 0 133 2 248 314 25 33 chr21 13904846 13904950 -21002620 + MIR SINE MIR 28 132 -130 2088 126 39 39 chr21 13904950 13905271 -21002299 + THE1B LTR MaLR 1 325 -39 2085 123 0 3 chr21 13905271 13905588 -21001982 + AluSx SINE Alu 1 316 0 2088 126 39 39 chr21 13905588 13905629 -21001941 + THE1B LTR MaLR 324 364 0 248 314 25 33 chr21 13905629 13905645 -21001925 + MIR SINE MIR 132 147 -115 1189 104 39 97 chr21 13906113 13906372 -21001198 - MSTA LTR MaLR 0 428 185 1845 178 0 0 chr21 13906373 13906666 -21000904 + AluSx SINE Alu 1 293 -19 1224 159 18 0 chr21 13906669 13906700 -21000870 - MSTA LTR MaLR -198 230 201 764 95 0 9 chr21 13906700 13906816 -21000754 + (GGAA)n Simple_repeat Simple_repeat 4 118 0 1224 159 18 0 chr21 13906816 13907010 -21000560 - MSTA LTR MaLR -227 201 1 2448 97 3 0 chr21 13907165 13907476 -21000094 + AluSx SINE Alu 1 312 0 22 0 0 0 chr21 13908077 13908099 -20999471 + AT_rich Low_complexity Low_complexity 1 22 0 716 137 26 0 chr21 13908243 13908360 -20999210 + L1PB4 LINE L1 6035 6154 -2 1979 100 30 11 chr21 13909144 13909415 -20998155 + AluSx SINE Alu 34 309 -3 22 0 0 0 chr21 13909963 13909985 -20997585 + AT_rich Low_complexity Low_complexity 1 22 0 1605 133 0 17 chr21 13909988 13910228 -20997342 - AluJo SINE Alu -41 271 36 1088 179 18 40 chr21 13910575 13910798 -20996772 + MER20 DNA MER1_type 1 218 -1 649 301 35 10 chr21 13911025 13911228 -20996342 + MIR SINE MIR 3 210 -52 558 317 141 36 chr21 13911570 13911928 -20995642 - L2 LINE L2 -804 2510 2191 371 19 0 38 chr21 13911928 13911981 -20995589 + (TGGA)n Simple_repeat Simple_repeat 1 51 0 558 317 141 36 chr21 13911981 13912203 -20995367 - L2 LINE L2 -1123 2191 1869 2717 59 62 6 chr21 13912408 13912763 -20994807 - THE1C LTR MaLR 0 375 1 2391 77 0 0 chr21 13912860 13913160 -20994410 + AluY SINE Alu 1 300 -11 368 322 8 8 chr21 13913250 13913371 -20994199 - L2 LINE L2 -2 3311 3191 3562 140 25 20 chr21 13913590 13914339 -20993231 - LTR1B LTR ERV1 0 826 1 758 128 90 19 chr21 13915536 13915692 -20991878 + L1MB2 LINE L1 6004 6170 -1 1475 177 32 14 chr21 13915748 13916057 -20991513 - AluJb SINE Alu 0 314 1 275 258 0 0 chr21 13916312 13916374 -20991196 + MIR SINE MIR 174 235 -27 1426 149 106 21 chr21 13916426 13916708 -20990862 + AluJo SINE Alu 1 306 -6 827 177 0 0 chr21 13917164 13917311 -20990259 - L1MB5 LINE L1 -8 6166 6020 468 308 40 40 chr21 13918347 13918545 -20989025 - MIR SINE MIR 0 262 65 615 205 0 8 chr21 13918742 13918859 -20988711 - MLT1C LTR MaLR 0 467 352 828 296 47 42 chr21 13918859 13919241 -20988329 + L2 LINE L2 2926 3309 -4 321 26 0 0 chr21 13919403 13919441 -20988129 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 33 0 0 chr21 13920092 13920122 -20987448 + AT_rich Low_complexity Low_complexity 1 30 0 480 240 128 36 chr21 13920680 13920876 -20986694 - MIR SINE MIR 0 262 49 315 111 28 28 chr21 13921413 13921485 -20986085 + CT-rich Low_complexity Low_complexity 1 72 0 1505 164 19 65 chr21 13921496 13921806 -20985764 - AluJo SINE Alu -16 296 1 362 266 131 10 chr21 13922059 13922258 -20985312 + L1MC5 LINE L1 7705 7927 -34 624 192 15 39 chr21 13922549 13922679 -20984891 - FLAM_A SINE Alu -14 128 2 1936 109 84 0 chr21 13922907 13923182 -20984388 + AluSx SINE Alu 1 298 -14 30 27 0 0 chr21 13923750 13923787 -20983783 + AT_rich Low_complexity Low_complexity 1 37 0 188 311 108 0 chr21 13924042 13924116 -20983454 - MIR SINE MIR -108 154 73 2331 85 0 13 chr21 13924411 13924716 -20982854 - AluSg SINE Alu -9 301 1 308 333 92 8 chr21 13925573 13925693 -20981877 - MIR SINE MIR -122 140 11 1508 170 20 39 chr21 13925712 13926018 -20981552 + AluJo SINE Alu 6 305 -7 6872 62 14 11 chr21 13926135 13927594 -20979976 - SVA Other Other -875 1386 3 1276 243 24 10 chr21 13927729 13928025 -20979545 - MLT1E2 LTR MaLR -76 550 251 1173 214 103 4 chr21 13928033 13928304 -20979266 - AluJo SINE Alu -14 298 1 1023 209 43 20 chr21 13928304 13928561 -20979009 - MLT1E3 LTR MaLR -371 255 9 1844 157 3 23 chr21 13928779 13929079 -20978491 + AluJb SINE Alu 1 294 -18 225 0 0 0 chr21 13929087 13929112 -20978458 + (CA)n Simple_repeat Simple_repeat 1 25 0 300 152 0 0 chr21 13929112 13929178 -20978392 + CT-rich Low_complexity Low_complexity 1 66 0 1265 296 36 27 chr21 13929260 13929702 -20977868 - MLT1J1 LTR MaLR 0 446 1 2734 29 0 3 chr21 13930600 13930912 -20976658 + AluY SINE Alu 1 311 0 23 33 0 0 chr21 13931502 13931532 -20976038 + AT_rich Low_complexity Low_complexity 1 30 0 2071 122 3 0 chr21 13931533 13931819 -20975751 - AluSx SINE Alu -25 287 1 497 240 0 7 chr21 13932507 13932657 -20974913 + CT-rich Low_complexity Low_complexity 1 149 0 2258 105 3 0 chr21 13934006 13934311 -20973259 - AluSx SINE Alu -6 306 1 23 0 0 0 chr21 13935683 13935706 -20971864 + AT_rich Low_complexity Low_complexity 1 23 0 470 347 62 18 chr21 13935844 13936118 -20971452 + L3 LINE CR1 463 748 -829 213 269 0 30 chr21 13936275 13936342 -20971228 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 1616 186 3 27 chr21 13936400 13936696 -20970874 - AluJo SINE Alu -22 290 2 1923 150 0 11 chr21 13937328 13937641 -20969929 - AluSx SINE Alu 0 310 1 2436 70 3 0 chr21 13937896 13938195 -20969375 - AluY SINE Alu -9 302 3 2226 125 0 0 chr21 13938359 13938664 -20968906 + AluSx SINE Alu 1 305 -7 21 57 0 0 chr21 13938907 13938942 -20968628 + AT_rich Low_complexity Low_complexity 1 35 0 1762 176 3 10 chr21 13939011 13939307 -20968263 - AluJb SINE Alu -18 294 1 1747 175 7 0 chr21 13939446 13939743 -20967827 + AluJo SINE Alu 1 299 -13 1065 196 15 5 chr21 13940085 13940289 -20967281 + MER58D DNA MER1_type 1 206 -180 239 54 27 0 chr21 13940292 13940329 -20967241 + (TTA)n Simple_repeat Simple_repeat 2 39 0 681 148 102 0 chr21 13940329 13940457 -20967113 + MER58D DNA MER1_type 245 385 -1 26 0 0 0 chr21 13940489 13940515 -20967055 + AT_rich Low_complexity Low_complexity 1 26 0 2639 145 39 7 chr21 13940757 13941172 -20966398 - MSTA LTR MaLR 0 428 1 2011 261 73 37 chr21 13941403 13942451 -20965119 - L2 LINE L2 -17 3296 2219 376 254 44 0 chr21 13942850 13942964 -20964606 - L2 LINE L2 -518 2796 2678 25 31 0 0 chr21 13943178 13943210 -20964360 + AT_rich Low_complexity Low_complexity 1 32 0 192 244 0 0 chr21 13943833 13943874 -20963696 - MIR SINE MIR -109 153 113 2138 169 34 6 chr21 13944021 13944376 -20963194 - MLT1A1 LTR MaLR 0 365 1 706 183 15 0 chr21 13945118 13945249 -20962321 - MER20 DNA MER1_type 0 219 87 2102 104 25 0 chr21 13945384 13945686 -20961884 + AluSg SINE Alu 1 309 0 2184 111 6 35 chr21 13947138 13947454 -20960116 - AluSx SINE Alu -4 308 2 1104 191 56 14 chr21 13947700 13947915 -20959655 - MER58A DNA MER1_type 0 224 1 288 273 109 64 chr21 13948924 13949144 -20958426 - MIR SINE MIR 0 262 33 1319 191 15 22 chr21 13949212 13949485 -20958085 - AluJb SINE Alu -28 284 14 24 32 0 0 chr21 13949491 13949522 -20958048 + AT_rich Low_complexity Low_complexity 1 31 0 2249 87 21 0 chr21 13949525 13949812 -20957758 - AluSc SINE Alu -16 293 1 21 0 0 0 chr21 13951189 13951210 -20956360 + AT_rich Low_complexity Low_complexity 1 21 0 2087 113 24 0 chr21 13951615 13951907 -20955663 - AluSx SINE Alu -13 299 1 1918 160 16 3 chr21 13952151 13952458 -20955112 + AluJb SINE Alu 1 311 -1 861 174 54 20 chr21 13952810 13952959 -20954611 + FRAM SINE Alu 1 154 -12 1454 53 0 0 chr21 13952968 13953138 -20954432 + AluY SINE Alu 127 296 -15 833 120 114 54 chr21 13953630 13953797 -20953773 - MLT1B LTR MaLR -213 177 1 1724 97 0 0 chr21 13954720 13954936 -20952634 + AluSx SINE Alu 3 218 -94 22 0 0 0 chr21 13955122 13955144 -20952426 + AT_rich Low_complexity Low_complexity 1 22 0 553 263 116 13 chr21 13955977 13956201 -20951369 - MIR SINE MIR -10 252 6 2326 93 0 3 chr21 13956597 13956897 -20950673 - AluSc SINE Alu -10 299 1 367 309 159 20 chr21 13957112 13957313 -20950257 + MIR SINE MIR 17 245 -17 232 261 0 0 chr21 13957280 13957326 -20950244 + L2 LINE L2 3258 3303 -10 191 329 61 24 chr21 13957527 13957609 -20949961 - L2 LINE L2 -209 3104 3020 886 224 29 38 chr21 13958135 13958345 -20949225 + MER3 DNA MER1_type 2 209 0 658 213 72 52 chr21 13958576 13958777 -20948793 - MIR SINE MIR -48 214 14 208 207 190 0 chr21 13958995 13959053 -20948517 + MIR SINE MIR 117 185 -77 2506 93 0 0 chr21 13961610 13961923 -20945647 + AluSp SINE Alu 1 313 0 2003 138 14 0 chr21 13962121 13962418 -20945152 + AluSx SINE Alu 1 301 -11 1019 172 74 39 chr21 13962565 13962768 -20944802 - AluJb SINE Alu -19 293 84 932 114 0 0 chr21 13962961 13963084 -20944486 + FLAM_C SINE Alu 1 123 -10 844 162 68 42 chr21 13963294 13963485 -20944085 + MER20 DNA MER1_type 24 219 0 1959 162 3 0 chr21 13963523 13963831 -20943739 + AluJb SINE Alu 1 309 -3 2287 63 9 66 chr21 13963842 13964174 -20943396 + AluSp SINE Alu 1 313 0 186 252 9 135 chr21 13964319 13964406 -20943164 - MIR SINE MIR -86 176 104 2328 62 10 3 chr21 13964406 13964694 -20942876 + AluY SINE Alu 1 290 -21 186 252 9 135 chr21 13964694 13964717 -20942853 - MIR SINE MIR -158 104 80 297 347 27 20 chr21 13964840 13964990 -20942580 - MIR SINE MIR -36 226 76 211 270 22 11 chr21 13966897 13966986 -20940584 + (CGGGG)n Simple_repeat Simple_repeat 5 94 0 352 318 0 54 chr21 13967857 13968005 -20939565 - L1MC4 LINE L1 -15 8027 7888 286 256 97 57 chr21 13969048 13969263 -20938307 - L1M3 LINE L1 -359 5821 5599 372 287 60 12 chr21 13969663 13969830 -20937740 - L1M3 LINE L1 -1010 5136 4962 224 330 117 0 chr21 13969835 13969938 -20937632 - L2 LINE L2 0 3272 3158 1196 187 57 18 chr21 13970456 13970742 -20936828 - MLT1D LTR MaLR -4 501 219 242 123 35 53 chr21 13970775 13970832 -20936738 - Alu SINE Alu -4 298 243 1540 177 21 21 chr21 13970794 13971076 -20936494 - AluJo SINE Alu -30 282 1 553 191 0 56 chr21 13971084 13971210 -20936360 - L2 LINE L2 -608 2706 2588 1894 145 10 20 chr21 13972288 13972592 -20934978 - AluJb SINE Alu -11 301 1 1440 241 109 47 chr21 13973741 13973790 -20933780 - MLT1F LTR MaLR -19 523 478 1711 158 3 63 chr21 13973790 13974106 -20933464 + AluJo SINE Alu 1 297 -15 1440 241 109 47 chr21 13974106 13974542 -20933028 - MLT1F LTR MaLR -64 478 8 2263 89 24 0 chr21 13974929 13975222 -20932348 + AluSc SINE Alu 1 300 -9 32 20 0 20 chr21 13975343 13975369 -20932201 + AT_rich Low_complexity Low_complexity 1 27 -22 666 175 17 17 chr21 13975369 13975489 -20932081 + FLAM_A SINE Alu 1 120 -13 32 20 0 20 chr21 13975489 13975512 -20932058 + AT_rich Low_complexity Low_complexity 27 49 0 203 295 26 13 chr21 13976057 13976135 -20931435 + (TATATG)n Simple_repeat Simple_repeat 3 81 0 1972 148 0 10 chr21 13977168 13977473 -20930097 - AluSx SINE Alu -10 302 1 247 262 123 16 chr21 13977942 13978064 -20929506 + L1ME LINE L1 5622 5756 -365 488 273 58 13 chr21 13978172 13978326 -20929244 - MIR SINE MIR -70 192 32 1811 131 40 0 chr21 13979064 13979364 -20928206 - AluSx SINE Alu 0 311 1 1910 152 3 0 chr21 13980709 13980992 -20926578 + AluSq SINE Alu 2 285 -28 3023 149 37 2 chr21 13981028 13981484 -20926086 - MER1A DNA MER1_type 0 529 58 23 78 0 0 chr21 13982388 13982439 -20925131 + AT_rich Low_complexity Low_complexity 1 51 0 36 0 0 0 chr21 13982511 13982547 -20925023 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr21 13982828 13982862 -20924708 + AT_rich Low_complexity Low_complexity 1 34 0 648 116 45 0 chr21 13982929 13983041 -20924529 - L1MC4 LINE L1 0 8042 7926 221 349 123 43 chr21 13984462 13984877 -20922693 - L2 LINE L2 -1054 2260 1813 21 0 0 0 chr21 13984978 13984999 -20922571 + AT_rich Low_complexity Low_complexity 1 21 0 408 202 75 11 chr21 13985191 13985285 -20922285 + MER33 DNA MER1_type 1 100 -224 460 186 108 0 chr21 13985340 13985469 -20922101 + MER33 DNA MER1_type 182 324 0 617 299 129 23 chr21 13985469 13985925 -20921645 - HAL1 LINE L1 -1172 1335 812 2151 126 3 0 chr21 13985928 13986222 -20921348 + AluSx SINE Alu 1 295 -17 1450 192 52 0 chr21 13986325 13986612 -20920958 + AluJo SINE Alu 1 302 -10 293 276 78 62 chr21 13987112 13987304 -20920266 - HAL1 LINE L1 -2312 195 1 24 0 0 0 chr21 13987350 13987374 -20920196 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 13988053 13988074 -20919496 + AT_rich Low_complexity Low_complexity 1 21 0 210 321 123 9 chr21 13988544 13988650 -20918920 - L2 LINE L2 -36 3236 3119 207 0 0 0 chr21 13989008 13989031 -20918539 + (T)n Simple_repeat Simple_repeat 1 23 0 409 218 158 30 chr21 13989553 13989686 -20917884 - MIR SINE MIR -109 153 4 1476 148 21 16 chr21 13989994 13990237 -20917333 + AluSx SINE Alu 49 292 -20 481 165 0 0 chr21 13990582 13990661 -20916909 + AluS SINE Alu 1 79 -234 385 324 61 7 chr21 13992396 13992544 -20915026 - MIR SINE MIR -74 188 33 25 0 0 0 chr21 13993598 13993623 -20913947 + AT_rich Low_complexity Low_complexity 1 25 0 526 230 155 33 chr21 13996568 13996781 -20910789 - HAL1 LINE L1 -190 2317 2079 850 288 0 0 chr21 13997680 13997916 -20909654 + L1ME3A LINE L1 5321 5556 -606 873 215 40 16 chr21 13997984 13998235 -20909335 + L1ME3A LINE L1 5695 5951 -219 583 198 86 66 chr21 13998272 13998515 -20909055 + L1ME3A LINE L1 5923 6170 0 22 35 0 0 chr21 13999584 13999613 -20907957 + AT_rich Low_complexity Low_complexity 1 29 0 407 167 56 46 chr21 13999649 13999757 -20907813 - MIR SINE MIR -29 233 125 23 0 0 0 chr21 14000895 14000918 -20906652 + AT_rich Low_complexity Low_complexity 1 23 0 935 129 68 0 chr21 14004389 14004552 -20903018 + L1MB2 LINE L1 5991 6164 -7 697 261 94 23 chr21 14004602 14004909 -20902661 + L1ME1 LINE L1 3856 4184 -1962 1936 191 102 66 chr21 14004968 14005220 -20902350 + L1ME1 LINE L1 4280 4521 -1625 1943 126 10 20 chr21 14005220 14005522 -20902048 - AluSx SINE Alu -13 299 1 1936 191 102 66 chr21 14005522 14005992 -20901578 + L1ME1 LINE L1 4521 5028 -1118 446 168 1 68 chr21 14006057 14006403 -20901167 + AluJo SINE Alu 1 299 -13 399 158 8 126 chr21 14006408 14006477 -20901093 + L1ME1 LINE L1 5136 5185 -961 1723 203 0 9 chr21 14006477 14006792 -20900778 + AluJo SINE Alu 1 312 0 399 158 8 126 chr21 14006792 14006849 -20900721 + L1ME1 LINE L1 5185 5247 -899 658 233 66 33 chr21 14006952 14007332 -20900238 + L1ME1 LINE L1 5239 5605 -561 2125 126 0 0 chr21 14007332 14007626 -20899944 - AluSq SINE Alu -19 294 1 658 233 66 33 chr21 14007626 14008062 -20899508 + L1ME1 LINE L1 5605 6160 -6 2228 113 0 7 chr21 14008331 14008633 -20898937 - AluSx SINE Alu -12 300 1 1879 122 15 0 chr21 14009080 14009343 -20898227 - AluSx SINE Alu -15 297 31 3360 144 102 5 chr21 14009344 14010698 -20896872 + pTR5 LTR ERV1 744 2450 -1 1171 109 0 0 chr21 14010699 14010864 -20896706 + HERV9 LTR ERV1 1 165 -8234 454 106 0 0 chr21 14010867 14010933 -20896637 - AluS SINE Alu -246 67 2 307 248 40 16 chr21 14011774 14011899 -20895671 + L1MC5 LINE L1 7107 7234 -727 2306 60 20 7 chr21 14011995 14012295 -20895275 + AluY SINE Alu 1 304 -7 354 250 60 9 chr21 14012343 14012459 -20895111 + L1MC5 LINE L1 7292 7413 -548 504 174 118 38 chr21 14012480 14012692 -20894878 + L1MC5 LINE L1 7462 7690 -271 541 226 72 82 chr21 14012744 14012952 -20894618 + L1MC5 LINE L1 7708 7913 -48 953 184 31 15 chr21 14013225 14013421 -20894149 - AluJo SINE Alu -113 199 1 230 259 37 37 chr21 14013837 14013918 -20893652 + L2 LINE L2 3138 3218 -54 2035 116 14 0 chr21 14013922 14014198 -20893372 + AluSx SINE Alu 1 280 -32 22 0 0 0 chr21 14014517 14014539 -20893031 + AT_rich Low_complexity Low_complexity 1 22 0 2217 106 3 26 chr21 14015676 14015988 -20891582 - AluSp SINE Alu -5 308 4 1804 148 14 3 chr21 14016362 14016653 -20890917 - AluSx SINE Alu -18 294 1 1704 253 84 31 chr21 14016723 14017530 -20890040 - L1M4 LINE L1 -2271 3875 3026 743 244 21 0 chr21 14017516 14017709 -20889861 + L1M4 LINE L1 2680 2876 -3270 504 239 22 11 chr21 14017718 14017898 -20889672 - L1M4 LINE L1 -3113 3033 2852 2064 115 14 3 chr21 14018119 14018407 -20889163 + AluSq SINE Alu 1 291 -22 2084 152 3 44 chr21 14018782 14018983 -20888587 - MLT1A1 LTR MaLR -19 346 165 2388 76 7 0 chr21 14018983 14019285 -20888285 - AluSp SINE Alu -9 304 1 2084 152 3 44 chr21 14019285 14019444 -20888126 - MLT1A1 LTR MaLR -200 165 1 923 211 87 19 chr21 14019872 14020137 -20887433 + L1MEc LINE L1 318 600 -5796 2086 94 19 36 chr21 14020199 14020506 -20887064 + AluSx SINE Alu 1 302 -10 533 134 0 31 chr21 14020576 14020673 -20886897 + L1MA4 LINE L1 6196 6289 -11 620 88 0 0 chr21 14020821 14020901 -20886669 + MADE1 DNA Mariner 1 80 0 5256 109 15 12 chr21 14022867 14023609 -20883961 - L1PA15 LINE L1 -4 6161 5418 1835 157 4 0 chr21 14023620 14023921 -20883649 - AluJb SINE Alu 0 302 1 1198 223 55 80 chr21 14024526 14024776 -20882794 - MLT1C LTR MaLR 0 467 233 2130 124 10 3 chr21 14024776 14025082 -20882488 - AluSx SINE Alu -4 308 1 1198 223 55 80 chr21 14025082 14025307 -20882263 - MLT1C LTR MaLR -234 233 4 1669 178 7 11 chr21 14025402 14025689 -20881881 + AluJo SINE Alu 1 286 -26 2221 84 37 0 chr21 14026182 14026480 -20881090 - AluSc SINE Alu 0 309 1 415 219 125 8 chr21 14027368 14027496 -20880074 - MER96B DNA MER1_type? -233 184 42 656 136 0 27 chr21 14027621 14027731 -20879839 + FLAM_C SINE Alu 35 141 -2 591 210 122 18 chr21 14027735 14027964 -20879606 + L1M4 LINE L1 2946 3198 -2948 745 197 71 10 chr21 14027946 14028144 -20879426 + L1MC3 LINE L1 7576 7785 0 199 184 53 0 chr21 14028744 14028782 -20878788 + MIR SINE MIR 119 158 -104 1996 111 18 0 chr21 14028822 14029134 -20878436 + AluSx SINE Alu 1 317 0 209 257 42 125 chr21 14029402 14029496 -20878074 + MIR SINE MIR 20 100 -108 1688 177 0 26 chr21 14029496 14029807 -20877763 - AluJb SINE Alu -9 303 1 209 257 42 125 chr21 14029807 14029856 -20877714 + MIR SINE MIR 100 151 -57 275 163 0 0 chr21 14030355 14030398 -20877172 - Alu SINE Alu -259 43 1 2097 111 10 7 chr21 14030947 14031235 -20876335 - AluSx SINE Alu -23 289 1 2308 99 3 0 chr21 14031747 14032049 -20875521 + AluSx SINE Alu 1 303 -9 2181 117 3 0 chr21 14032130 14032437 -20875133 - AluSx SINE Alu -4 308 1 883 174 0 52 chr21 14033524 14033696 -20873874 + FRAM SINE Alu 1 163 -13 2296 113 0 3 chr21 14033987 14034297 -20873273 + AluSg SINE Alu 1 309 -1 295 278 74 28 chr21 14034493 14034709 -20872861 + L1M4c LINE L1 2271 2496 -3888 1693 168 7 26 chr21 14035373 14035682 -20871888 - AluJo SINE Alu -8 304 2 228 248 80 22 chr21 14035734 14035871 -20871699 + L1M4c LINE L1 3134 3278 -3104 646 193 9 0 chr21 14035910 14036019 -20871551 + FLAM_C SINE Alu 2 111 -32 679 241 70 25 chr21 14036061 14036219 -20871351 + FAM SINE Alu 1 165 -10 258 56 0 0 chr21 14036798 14036834 -20870736 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 932 195 0 0 chr21 14036838 14036987 -20870583 - FRAM SINE Alu -30 146 1 25 0 0 0 chr21 14036987 14037012 -20870558 + AT_rich Low_complexity Low_complexity 1 25 0 846 170 0 21 chr21 14037012 14037153 -20870417 - FLAM_C SINE Alu -4 139 2 2674 208 41 22 chr21 14037700 14038233 -20869337 + MLT2B3 LTR ERVL 12 554 0 286 348 8 42 chr21 14038235 14038353 -20869217 + L2 LINE L2 397 510 -2804 2088 132 7 0 chr21 14038593 14038896 -20868674 + AluSx SINE Alu 1 305 -7 275 218 42 63 chr21 14038896 14039038 -20868532 + L1MC5 LINE L1 7636 7774 -187 348 174 76 22 chr21 14039039 14039131 -20868439 + L1MC5 LINE L1 7809 7905 -56 891 308 91 63 chr21 14039186 14039381 -20868189 + L2 LINE L2 758 946 -2368 2002 115 27 10 chr21 14039381 14039677 -20867893 + AluSx SINE Alu 1 301 -11 891 308 91 63 chr21 14039677 14040209 -20867361 + L2 LINE L2 946 1505 -1809 411 259 204 14 chr21 14040363 14040510 -20867060 - MER5A DNA MER1_type -6 183 9 2234 187 33 9 chr21 14040837 14041246 -20866324 + MSTB LTR MaLR 3 428 0 4279 100 9 0 chr21 14041446 14041994 -20865576 - MER41A LTR ERV1 -1 553 1 21 0 0 0 chr21 14042170 14042191 -20865379 + AT_rich Low_complexity Low_complexity 1 21 0 3050 221 83 30 chr21 14042263 14042818 -20864752 + L1ME1 LINE L1 4270 4901 -1245 2174 104 3 3 chr21 14042818 14043117 -20864453 - AluSg SINE Alu -11 299 1 3050 221 83 30 chr21 14043117 14043546 -20864024 + L1ME1 LINE L1 4901 5306 -840 601 181 4 6 chr21 14043589 14043832 -20863738 + AluJ SINE Alu 2 293 -9 2442 50 0 0 chr21 14043834 14044115 -20863455 + AluY SINE Alu 1 281 -30 21 0 0 0 chr21 14044117 14044138 -20863432 + AT_rich Low_complexity Low_complexity 1 21 0 776 197 16 44 chr21 14044150 14044333 -20863237 + L1ME1 LINE L1 5382 5559 -605 4150 173 46 55 chr21 14044340 14044920 -20862650 + L1MB2 LINE L1 4746 5330 -841 2108 135 3 0 chr21 14044920 14045217 -20862353 - AluSq SINE Alu -15 298 1 4150 173 46 55 chr21 14045217 14045702 -20861868 + L1MB2 LINE L1 5330 5813 -358 2437 100 0 0 chr21 14045702 14046013 -20861557 - AluSx SINE Alu -1 311 1 4150 173 46 55 chr21 14046013 14046310 -20861260 + L1MB2 LINE L1 5813 6111 -60 1234 179 14 0 chr21 14046310 14046517 -20861053 + MER2 DNA MER2_type 1 210 -134 26 0 0 0 chr21 14046649 14046675 -20860895 + AT_rich Low_complexity Low_complexity 1 26 0 1976 191 83 53 chr21 14046682 14046734 -20860836 + L1ME1 LINE L1 5551 5600 -566 1790 119 126 4 chr21 14046734 14047003 -20860567 - AluSx SINE Alu 0 302 1 1976 191 83 53 chr21 14047003 14047457 -20860113 + L1ME1 LINE L1 5600 6072 -94 187 333 24 0 chr21 14047993 14048077 -20859493 + L2 LINE L2 1353 1438 -1876 617 250 65 38 chr21 14048430 14048614 -20858956 + MIR SINE MIR 64 252 -10 385 238 66 7 chr21 14048631 14048782 -20858788 - L1M3 LINE L1 -725 5455 5296 2198 129 0 0 chr21 14050267 14050570 -20857000 - AluSx SINE Alu -5 307 5 1151 202 112 97 chr21 14050611 14050783 -20856787 + MLT1C LTR MaLR 6 174 -293 405 0 0 0 chr21 14050783 14050828 -20856742 + (CA)n Simple_repeat Simple_repeat 2 46 0 1151 202 112 97 chr21 14050828 14050926 -20856644 + MLT1C LTR MaLR 174 269 -198 2093 118 3 13 chr21 14050926 14051230 -20856340 - AluSx SINE Alu -11 301 1 1151 202 112 97 chr21 14051230 14051345 -20856225 + MLT1C LTR MaLR 269 403 -64 2321 107 0 0 chr21 14051345 14051654 -20855916 - AluSx SINE Alu -3 309 1 1151 202 112 97 chr21 14051654 14051721 -20855849 + MLT1C LTR MaLR 403 467 0 2217 118 0 7 chr21 14052639 14052935 -20854635 - AluSx SINE Alu -16 296 3 262 271 0 0 chr21 14052946 14053005 -20854565 + MIR SINE MIR 113 171 -91 1569 91 72 49 chr21 14053040 14053216 -20854354 + L1MA2 LINE L1 6035 6220 -84 2349 88 0 0 chr21 14053216 14053522 -20854048 - AluY SINE Alu -5 306 1 1569 91 72 49 chr21 14053522 14053609 -20853961 + L1MA2 LINE L1 6220 6304 0 2130 118 0 7 chr21 14054662 14054959 -20852611 + AluSx SINE Alu 1 295 -17 223 227 61 30 chr21 14055250 14055316 -20852254 + L2 LINE L2 3241 3308 -5 2738 42 0 0 chr21 14055737 14056047 -20851523 - AluY SINE Alu -1 310 1 1109 145 47 5 chr21 14056909 14057102 -20850468 - L1MC3 LINE L1 -2 7783 7599 972 107 0 18 chr21 14057102 14057271 -20850299 + (TTCC)n Simple_repeat Simple_repeat 3 168 0 1667 188 0 7 chr21 14057271 14057553 -20850017 - AluJb SINE Alu -32 280 1 1109 145 47 5 chr21 14057553 14057572 -20849998 - L1MC3 LINE L1 -185 7600 6114 23 0 0 0 chr21 14057577 14057600 -20849970 + AT_rich Low_complexity Low_complexity 1 23 0 313 292 31 108 chr21 14057689 14057884 -20849686 - MER5A DNA MER1_type -3 186 7 2622 39 0 3 chr21 14059512 14059824 -20847746 - AluY SINE Alu 0 311 1 240 200 0 0 chr21 14059836 14059881 -20847689 - MLT1D LTR MaLR -431 74 30 1009 202 88 39 chr21 14060435 14060742 -20846828 - MER33 DNA MER1_type 0 324 3 235 172 16 125 chr21 14060928 14060992 -20846578 + LTR67 LTR ERVL 97 153 -404 328 243 24 0 chr21 14060954 14061042 -20846528 + MLT1J LTR MaLR 111 263 -333 662 179 159 41 chr21 14061188 14061199 -20846371 + AluJo SINE Alu 126 134 -178 468 186 196 0 chr21 14061199 14061323 -20846247 + FLAM_C SINE Alu 3 145 0 662 179 159 41 chr21 14061323 14061455 -20846115 + AluJo SINE Alu 134 287 -25 1788 129 38 0 chr21 14061465 14061729 -20845841 + AluSx SINE Alu 3 276 -36 228 67 0 0 chr21 14061737 14061767 -20845803 + (TAA)n Simple_repeat Simple_repeat 2 31 0 237 305 86 9 chr21 14061866 14061971 -20845599 + LTR33 LTR ERVL 71 183 -338 290 160 20 0 chr21 14062011 14062061 -20845509 + LTR33A LTR ERVL 473 523 0 204 301 114 91 chr21 14062062 14062107 -20845463 + L2 LINE L2 2658 2701 -613 2239 120 13 0 chr21 14062107 14062415 -20845155 + AluSx SINE Alu 1 312 0 204 301 114 91 chr21 14062415 14062545 -20845025 + L2 LINE L2 2701 2837 -477 3757 165 17 17 chr21 14062550 14063185 -20844385 + MER41B LTR ERV1 1 635 0 643 279 50 38 chr21 14063248 14063439 -20844131 + L2 LINE L2 2953 3151 -162 4269 115 45 68 chr21 14063439 14064146 -20843424 + LTR8 LTR ERV1 1 691 0 643 279 50 38 chr21 14064146 14064273 -20843297 + L2 LINE L2 3151 3275 -38 225 331 47 34 chr21 14064265 14064413 -20843157 - L2 LINE L2 -905 2409 2260 1774 218 83 120 chr21 14064547 14065457 -20842113 + LTR28 LTR ERV1 1 1020 0 4853 133 93 19 chr21 14065626 14066467 -20841103 + MER4D LTR ERV1 1 903 0 2535 77 0 0 chr21 14067014 14067324 -20840246 + AluY SINE Alu 1 310 -1 2108 193 34 34 chr21 14067955 14068422 -20839148 - MLT1C LTR MaLR 0 467 1 1533 201 134 43 chr21 14069603 14070066 -20837504 - MLT1D LTR MaLR 0 505 1 2049 162 162 15 chr21 14070241 14070410 -20837160 - LOR1b LTR ERV1 0 461 318 2144 120 143 49 chr21 14070410 14070449 -20837121 - MSTA LTR MaLR 0 428 394 1873 157 3 14 chr21 14070449 14070759 -20836811 + AluSx SINE Alu 1 307 0 2144 120 143 49 chr21 14070759 14071109 -20836461 - MSTA LTR MaLR -34 394 1 2049 162 162 15 chr21 14071109 14071341 -20836229 - LOR1b LTR ERV1 -143 318 1 1240 173 4 18 chr21 14071502 14071727 -20835843 - MLT1A1 LTR MaLR -143 222 1 640 212 38 0 chr21 14071730 14071862 -20835708 + L1MC2 LINE L1 6195 6331 -13 400 237 50 12 chr21 14072018 14072159 -20835411 - MER69A DNA AcHobo -27 150 4 192 311 76 42 chr21 14072451 14072570 -20835000 - MIR SINE MIR -65 143 21 836 244 6 0 chr21 14073584 14073744 -20833826 - AluJb SINE Alu -15 297 137 184 288 110 42 chr21 14075196 14075314 -20832256 + MIR SINE MIR 21 146 -62 405 187 112 112 chr21 14075605 14075711 -20831859 - L2 LINE L2 0 3313 3205 2034 109 51 10 chr21 14075711 14076005 -20831565 - AluSq SINE Alu -7 306 1 405 187 112 112 chr21 14076005 14076032 -20831538 - L2 LINE L2 -107 3206 3180 264 279 12 35 chr21 14076458 14076544 -20831026 + L2 LINE L2 3139 3222 -50 2142 133 55 33 chr21 14078613 14078980 -20828590 + THE1C LTR MaLR 1 375 0 10529 124 20 42 chr21 14078982 14080596 -20826974 + THE1C-int LTR MaLR 3 1580 0 1955 144 69 30 chr21 14080596 14080957 -20826613 + THE1C LTR MaLR 1 375 0 267 325 75 8 chr21 14080958 14081078 -20826492 + L2 LINE L2 3145 3272 0 2120 219 70 8 chr21 14082448 14082932 -20824638 + LTR40a LTR ERVL 1 514 -5 1670 215 65 0 chr21 14083439 14083811 -20823759 + L1MA4 LINE L1 5901 6296 -4 377 348 98 22 chr21 14083873 14084097 -20823473 + L2 LINE L2 2602 2842 -472 608 298 27 53 chr21 14084122 14084328 -20823242 + MIR SINE MIR 4 203 -59 2294 162 18 30 chr21 14084328 14084723 -20822847 - MSTD LTR MaLR -4 392 3 608 298 27 53 chr21 14084723 14084778 -20822792 + MIR SINE MIR 203 258 -4 777 247 51 21 chr21 14085042 14085277 -20822293 + LTR50 LTR ERVL 1 242 -553 854 181 67 43 chr21 14085305 14085515 -20822055 - MER96B DNA MER1_type? -1 416 202 1550 202 7 3 chr21 14085740 14086037 -20821533 + AluJb SINE Alu 5 302 -10 1936 154 6 16 chr21 14086081 14086393 -20821177 - AluSx SINE Alu -3 309 1 2232 95 3 3 chr21 14086456 14086750 -20820820 + AluY SINE Alu 1 294 -17 294 29 0 0 chr21 14086761 14086796 -20820774 + (CA)n Simple_repeat Simple_repeat 2 36 0 1671 203 3 0 chr21 14086989 14087299 -20820271 + HERVH LTR ERV1 6804 7114 -599 767 161 36 52 chr21 14087286 14087479 -20820091 + HERVH LTR ERV1 7518 7707 -6 517 214 48 28 chr21 14087729 14087874 -20819696 + LTR7 LTR ERV1 303 450 0 1208 172 69 0 chr21 14089922 14090126 -20817444 + MER20 DNA MER1_type 2 219 0 874 204 73 34 chr21 14091695 14091901 -20815669 - AluJb SINE Alu -90 222 9 360 223 31 62 chr21 14092368 14092498 -20815072 + MSTC LTR MaLR 1 126 -302 523 196 107 9 chr21 14092948 14093060 -20814510 + L2 LINE L2 3190 3312 -1 416 131 12 60 chr21 14093169 14093253 -20814317 - L1PA3 LINE L1 0 6155 6076 1657 159 27 70 chr21 14093299 14093671 -20813899 - MLT1A1 LTR MaLR 0 365 10 304 146 0 0 chr21 14094702 14094750 -20812820 - MER44D DNA MER2_type 0 605 558 3688 149 16 18 chr21 14094754 14095363 -20812207 - MER44D DNA MER2_type -95 610 3 2104 136 0 0 chr21 14095533 14095827 -20811743 - AluSx SINE Alu -17 295 2 570 169 15 66 chr21 14095827 14095963 -20811607 - L1MD3 LINE L1 -18 7977 7849 459 0 0 0 chr21 14096665 14096716 -20810854 + (TG)n Simple_repeat Simple_repeat 2 52 0 2352 56 0 80 chr21 14097701 14098025 -20809545 - AluSp SINE Alu -15 298 1 614 88 0 0 chr21 14098143 14098223 -20809347 + MADE1 DNA Mariner 1 80 0 3355 116 0 16 chr21 14099640 14100125 -20807445 - MER1A DNA MER1_type 0 529 53 1976 138 17 3 chr21 14100197 14100487 -20807083 - AluJb SINE Alu -18 294 1 2192 76 33 30 chr21 14100496 14100800 -20806770 - AluY SINE Alu -6 305 1 2883 160 79 67 chr21 14101347 14102030 -20805540 - LTR8 LTR ERV1 0 691 1 695 272 51 84 chr21 14102135 14102469 -20805101 - L2 LINE L2 0 3313 2991 1499 24 0 0 chr21 14102558 14102725 -20804845 + AluY SINE Alu 143 309 -2 424 186 55 84 chr21 14102774 14103000 -20804570 - MLT1G1 LTR MaLR -29 566 256 1491 238 97 28 chr21 14103305 14103750 -20803820 + MLT1G1 LTR MaLR 1 525 -70 2461 47 3 10 chr21 14103834 14104131 -20803439 - AluY SINE Alu -16 295 1 266 253 48 36 chr21 14104152 14104235 -20803335 + L2 LINE L2 3188 3271 -1 2182 120 10 0 chr21 14104354 14104654 -20802916 - AluSx SINE Alu -9 303 1 2098 122 3 7 chr21 14105132 14105435 -20802135 - AluSx SINE Alu -10 302 1 306 252 75 37 chr21 14105702 14105809 -20801761 - MER5A DNA MER1_type -43 146 36 237 266 86 55 chr21 14105703 14105831 -20801739 + MER5A DNA MER1_type 55 186 -3 272 294 0 15 chr21 14105972 14106040 -20801530 + MER5B DNA MER1_type 6 72 -106 2426 89 3 6 chr21 14106321 14106635 -20800935 + AluSq SINE Alu 1 313 0 256 272 72 41 chr21 14107339 14107534 -20800036 + HAL1 LINE L1 1147 1347 -1160 310 269 83 19 chr21 14107583 14107739 -20799831 + HAL1b LINE L1 324 489 -859 2521 68 0 7 chr21 14108130 14108439 -20799131 + AluY SINE Alu 1 307 -4 2021 90 52 0 chr21 14108498 14108806 -20798764 + AluSx SINE Alu 1 322 0 361 307 50 37 chr21 14108919 14109137 -20798433 + L1M3 LINE L1 2143 2363 -3783 238 247 74 12 chr21 14109166 14109247 -20798323 + L1M3 LINE L1 5358 5443 -728 4132 112 5 0 chr21 14109514 14110065 -20797505 + MER41A LTR ERV1 1 554 0 885 209 59 0 chr21 14110561 14110748 -20796822 + MLT1A2 LTR MaLR 3 200 -174 2506 157 43 2 chr21 14110748 14111168 -20796402 + LTR36 LTR ERV1 1 437 -174 306 0 0 0 chr21 14111168 14111202 -20796368 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 579 87 65 11 chr21 14111226 14111318 -20796252 + AluY SINE Alu 210 306 -5 22 0 0 0 chr21 14111964 14111986 -20795584 + AT_rich Low_complexity Low_complexity 1 22 0 2162 119 0 0 chr21 14114279 14114573 -20792997 + AluSx SINE Alu 1 294 -18 1858 141 20 13 chr21 14114573 14114877 -20792693 + AluSg SINE Alu 1 306 -4 1945 92 70 11 chr21 14115062 14115333 -20792237 - AluSq SINE Alu -22 291 5 2203 105 7 3 chr21 14117559 14117854 -20789716 - AluSx SINE Alu -16 296 1 207 0 0 0 chr21 14118677 14118700 -20788870 + (A)n Simple_repeat Simple_repeat 1 23 0 1780 194 48 9 chr21 14118754 14119089 -20788481 + MER7A DNA MER2_type 1 346 0 264 372 18 9 chr21 14120070 14120183 -20787387 - MER5A DNA MER1_type 0 189 76 2102 164 40 5 chr21 14120253 14120626 -20786944 + MLT1B LTR MaLR 1 386 -4 2177 123 0 19 chr21 14120718 14121034 -20786536 + AluSx SINE Alu 1 310 -2 26 0 0 0 chr21 14121135 14121161 -20786409 + AT_rich Low_complexity Low_complexity 1 26 0 2121 85 64 0 chr21 14121618 14121899 -20785671 + AluSx SINE Alu 1 299 -13 277 233 120 57 chr21 14121920 14122057 -20785513 + MIR3 SINE MIR 57 201 -7 468 111 28 0 chr21 14122060 14122132 -20785438 - Tigger1 DNA MER2_type -54 2364 2291 186 43 0 0 chr21 14123206 14123229 -20784341 + (A)n Simple_repeat Simple_repeat 1 23 0 14496 112 45 28 chr21 14124120 14126336 -20781234 + Tigger1 DNA MER2_type 61 2320 -98 2103 104 28 3 chr21 14126336 14126623 -20780947 - AluSg SINE Alu -16 294 1 14496 112 45 28 chr21 14126623 14126724 -20780846 + Tigger1 DNA MER2_type 2320 2418 0 2036 107 48 10 chr21 14128283 14128573 -20778997 - AluSg SINE Alu -9 301 1 484 282 74 56 chr21 14129765 14129981 -20777589 - L3 LINE CR1 -167 1410 1191 305 394 72 27 chr21 14130023 14130315 -20777255 - L3 LINE CR1 -1083 494 190 1722 238 61 8 chr21 14130461 14130974 -20776596 + MLT1F LTR MaLR 10 539 -3 2116 100 0 82 chr21 14131411 14131742 -20775828 + AluSx SINE Alu 2 305 -7 2269 62 49 3 chr21 14131879 14132167 -20775403 + AluY SINE Alu 1 301 -10 1700 205 7 0 chr21 14132176 14132483 -20775087 + AluSx SINE Alu 1 309 -3 24 38 0 38 chr21 14134217 14134245 -20773325 + AT_rich Low_complexity Low_complexity 1 28 -23 2227 110 3 7 chr21 14134245 14134554 -20773016 + AluSx SINE Alu 1 308 -4 24 38 0 38 chr21 14134554 14134578 -20772992 + AT_rich Low_complexity Low_complexity 28 51 0 198 371 21 10 chr21 14138098 14138195 -20769375 + MIR SINE MIR 29 126 -82 639 272 89 10 chr21 14139871 14140073 -20767497 - MIR SINE MIR -17 245 28 2575 55 0 13 chr21 14140141 14140449 -20767121 + AluY SINE Alu 1 304 -7 2116 102 3 22 chr21 14141275 14141589 -20765981 - AluY SINE Alu -3 308 1 21 0 0 0 chr21 14141958 14141979 -20765591 + AT_rich Low_complexity Low_complexity 1 21 0 201 222 0 0 chr21 14143151 14143187 -20764383 + (CAG)n Simple_repeat Simple_repeat 2 37 0 446 271 88 41 chr21 14143190 14143360 -20764210 - MIR SINE MIR -23 239 62 616 321 53 52 chr21 14144987 14145477 -20762093 + L2 LINE L2 2140 2633 -681 864 181 161 74 chr21 14145477 14145709 -20761861 + MLT1A1 LTR MaLR 1 272 -93 2701 30 0 0 chr21 14145709 14146012 -20761558 - AluY SINE Alu -8 303 1 864 181 161 74 chr21 14146012 14146115 -20761455 + MLT1A1 LTR MaLR 272 365 0 616 321 53 52 chr21 14146115 14146129 -20761441 + L2 LINE L2 2633 2645 -669 206 362 72 26 chr21 14146499 14146651 -20760919 - MIR SINE MIR -98 164 6 1496 116 23 0 chr21 14147243 14147459 -20760111 - AluSx SINE Alu -91 221 1 2268 110 3 0 chr21 14148141 14148441 -20759129 + AluSg SINE Alu 1 301 -9 4469 54 7 20 chr21 14148920 14149525 -20758045 + L1PA8 LINE L1 5232 5829 -343 37836 32 2 2 chr21 14149527 14155552 -20752018 + L1PA2 LINE L1 1 6155 0 2799 69 6 8 chr21 14155594 14155954 -20751616 + L1PA8 LINE L1 5814 6172 0 367 297 188 0 chr21 14156584 14156712 -20750858 + MER5A DNA MER1_type 32 183 -6 2124 110 3 25 chr21 14156812 14157131 -20750439 + AluSx SINE Alu 1 312 0 222 324 136 17 chr21 14157714 14157842 -20749728 - MIR3 SINE MIR -71 137 15 2122 62 65 7 chr21 14157913 14158188 -20749382 + AluY SINE Alu 17 307 -4 2240 71 7 0 chr21 14159222 14159538 -20748032 + AluY SINE Alu 1 318 0 210 37 0 0 chr21 14159591 14159618 -20747952 + (CA)n Simple_repeat Simple_repeat 2 28 0 431 184 0 0 chr21 14159619 14159695 -20747875 + L1MC4 LINE L1 7810 7885 -157 498 136 0 37 chr21 14159913 14159994 -20747576 - AluSc SINE Alu -14 295 218 1494 92 0 0 chr21 14159994 14160179 -20747391 - AluSc SINE Alu -124 185 1 23 54 0 0 chr21 14160423 14160460 -20747110 + AT_rich Low_complexity Low_complexity 1 37 0 250 323 32 11 chr21 14161158 14161251 -20746319 - MER91A DNA MER1_type -54 142 48 21 0 0 0 chr21 14161742 14161763 -20745807 + AT_rich Low_complexity Low_complexity 1 21 0 600 250 44 22 chr21 14162547 14162727 -20744843 + L1MC5 LINE L1 7342 7525 -436 189 0 0 0 chr21 14163487 14163508 -20744062 + (AAGTG)n Simple_repeat Simple_repeat 3 23 0 896 209 47 18 chr21 14164136 14164256 -20743314 - L1MA4 LINE L1 0 6300 6185 1827 176 0 13 chr21 14164256 14164563 -20743007 - AluJo SINE Alu -9 303 1 896 209 47 18 chr21 14164563 14164720 -20742850 - L1MA4 LINE L1 -115 6185 6015 21 36 0 0 chr21 14164943 14164971 -20742599 + AT_rich Low_complexity Low_complexity 1 28 0 1530 201 101 30 chr21 14165086 14165520 -20742050 + MLT1C LTR MaLR 3 467 0 2184 106 3 3 chr21 14165602 14165895 -20741675 - AluSg SINE Alu -17 293 1 2422 96 0 0 chr21 14166721 14167023 -20740547 + AluSg SINE Alu 1 302 -8 1515 183 46 53 chr21 14167270 14167434 -20740136 + MLT1B LTR MaLR 1 165 -225 2209 76 42 0 chr21 14167434 14167723 -20739847 + AluSp SINE Alu 1 301 -12 1515 183 46 53 chr21 14167723 14167951 -20739619 + MLT1B LTR MaLR 165 390 0 1707 172 3 19 chr21 14168927 14169235 -20738335 - AluJo SINE Alu -9 303 1 292 238 50 69 chr21 14169749 14169850 -20737720 - MER5A DNA MER1_type -90 99 1 905 198 0 51 chr21 14171951 14172148 -20735422 - MER5A DNA MER1_type 0 189 3 2160 111 3 0 chr21 14172638 14172936 -20734634 - AluSg SINE Alu -11 299 1 192 329 171 0 chr21 14173512 14173594 -20733976 + MIR3 SINE MIR 84 179 -29 1169 131 15 77 chr21 14173928 14174202 -20733368 - L1MB3 LINE L1 -8 6175 5919 585 158 20 10 chr21 14174210 14174311 -20733259 - U6 snRNA snRNA -4 103 2 2331 72 17 0 chr21 14174323 14174613 -20732957 - AluSp SINE Alu -18 295 1 1976 116 60 0 chr21 14174613 14174896 -20732674 - AluSg SINE Alu -9 301 1 198 0 0 0 chr21 14176543 14176565 -20731005 + (T)n Simple_repeat Simple_repeat 1 22 0 2475 201 22 55 chr21 14176598 14176862 -20730708 + L1M4 LINE L1 4638 4909 -1237 1547 189 64 4 chr21 14176862 14177143 -20730427 - AluJb SINE Alu -13 299 2 2475 201 22 55 chr21 14177143 14177546 -20730024 + L1M4 LINE L1 4909 5281 -865 2181 141 0 0 chr21 14177546 14177858 -20729712 + AluSx SINE Alu 1 312 0 2475 201 22 55 chr21 14177858 14177922 -20729648 + L1M4 LINE L1 5281 5346 -800 2364 98 0 7 chr21 14178883 14179188 -20728382 + AluSx SINE Alu 1 303 -9 22 56 0 0 chr21 14180244 14180280 -20727290 + AT_rich Low_complexity Low_complexity 1 36 0 26 64 0 0 chr21 14180302 14180349 -20727221 + AT_rich Low_complexity Low_complexity 1 47 0 278 235 68 98 chr21 14180996 14181128 -20726442 + MIR SINE MIR 20 147 -115 295 369 43 21 chr21 14181154 14181295 -20726275 - MER91A DNA MER1_type -9 187 44 1968 93 7 11 chr21 14181531 14181800 -20725770 - AluSq SINE Alu -2 311 44 370 240 64 40 chr21 14182897 14183022 -20724548 - L1MC5 LINE L1 -36 7925 7798 345 47 0 0 chr21 14183345 14183388 -20724182 + (CA)n Simple_repeat Simple_repeat 2 44 0 758 61 0 0 chr21 14183410 14183508 -20724062 - L1PA5 LINE L1 -1 6153 6056 216 0 0 0 chr21 14183905 14183929 -20723641 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 705 91 0 20 chr21 14184267 14184366 -20723204 - AluSq/x SINE Alu -188 125 29 445 207 48 21 chr21 14185003 14185148 -20722422 + L1MD3 LINE L1 7839 7987 -8 198 326 23 35 chr21 14185283 14185369 -20722201 + MIR SINE MIR 59 143 -119 337 22 0 0 chr21 14185916 14185962 -20721608 - AluSc SINE Alu -2 306 261 324 293 65 79 chr21 14187976 14188205 -20719365 + L2 LINE L2 3040 3265 -7 1359 216 0 21 chr21 14188897 14189179 -20718391 + AluJb SINE Alu 37 312 0 2085 91 7 14 chr21 14189450 14189737 -20717833 - AluSc SINE Alu -24 285 1 431 250 39 107 chr21 14189962 14190242 -20717328 - MIR SINE MIR 0 262 2 2289 92 0 0 chr21 14190314 14190617 -20716953 + AluSg SINE Alu 1 303 -7 4636 83 33 3 chr21 14191130 14191771 -20715799 - PABL_A LTR ERV1 0 660 1 424 114 0 14 chr21 14192183 14192253 -20715317 + MER4A LTR ERV1 1 69 -595 1529 151 9 84 chr21 14192271 14192603 -20714967 + MER4A LTR ERV1 358 664 0 216 296 14 0 chr21 14193532 14193603 -20713967 + L2 LINE L2 3242 3313 0 2035 110 3 24 chr21 14193982 14194273 -20713297 - AluSx SINE Alu -25 287 3 2336 82 33 0 chr21 14195757 14196060 -20711510 - AluSp SINE Alu 0 313 1 1603 151 19 68 chr21 14199310 14199621 -20707949 - AluJo SINE Alu -16 296 1 2280 76 0 30 chr21 14200234 14200537 -20707033 + AluY SINE Alu 17 310 -1 1639 179 24 7 chr21 14200728 14201110 -20706460 + AluJo SINE Alu 11 397 0 312 158 0 0 chr21 14201099 14201156 -20706414 + GA-rich Low_complexity Low_complexity 3 59 0 216 0 0 0 chr21 14201184 14201208 -20706362 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2017 266 59 25 chr21 14202123 14202211 -20705359 + L1MEc LINE L1 256 340 -6267 2381 75 3 3 chr21 14202211 14202505 -20705065 - AluSc SINE Alu -14 295 2 2017 266 59 25 chr21 14202505 14203209 -20704361 + L1MEc LINE L1 340 1075 -5532 327 300 36 9 chr21 14203425 14203535 -20704035 + L1MEc LINE L1 1418 1530 -4896 832 192 13 19 chr21 14203703 14203859 -20703711 - FRAM SINE Alu -20 156 2 1597 212 111 79 chr21 14203864 14204651 -20702919 + L1MEc LINE L1 1914 2725 -3882 2266 104 10 10 chr21 14204821 14205128 -20702442 + AluSx SINE Alu 1 307 -5 297 291 39 101 chr21 14205312 14205477 -20702093 + MIR3 SINE MIR 18 173 -35 1681 162 2 121 chr21 14205477 14205891 -20701679 + MLT1A1 LTR MaLR 1 365 0 297 291 39 101 chr21 14205891 14205904 -20701666 + MIR3 SINE MIR 173 185 -23 1743 174 90 14 chr21 14207890 14208258 -20699312 + MSTD LTR MaLR 1 396 0 224 271 65 47 chr21 14209514 14209621 -20697949 - MIR SINE MIR -39 223 115 26 0 0 0 chr21 14209717 14209743 -20697827 + AT_rich Low_complexity Low_complexity 1 26 0 2251 113 0 0 chr21 14209832 14210133 -20697437 + AluSc SINE Alu 1 301 -8 231 0 50 25 chr21 14211821 14211861 -20695709 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 1729 189 105 5 chr21 14211901 14212309 -20695261 - MER74A LTR ERVL 0 558 110 198 0 0 0 chr21 14212872 14212894 -20694676 + (T)n Simple_repeat Simple_repeat 1 22 0 332 310 61 51 chr21 14212896 14213093 -20694477 + MIR3 SINE MIR 4 202 -6 186 43 0 0 chr21 14215015 14215038 -20692532 + (GGAA)n Simple_repeat Simple_repeat 1 23 0 377 341 56 19 chr21 14215047 14215267 -20692303 + MIR SINE MIR 30 255 -7 208 314 0 0 chr21 14215385 14215487 -20692083 + A-rich Low_complexity Low_complexity 1 102 0 2062 186 104 19 chr21 14216408 14216887 -20690683 + MLT2B1 LTR ERVL 1 520 0 1852 82 97 0 chr21 14217584 14217688 -20689882 + AluSp SINE Alu 1 93 -217 180 0 0 0 chr21 14217688 14217708 -20689862 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1852 82 97 0 chr21 14217708 14217888 -20689682 + AluSp SINE Alu 93 310 0 501 232 228 22 chr21 14219357 14219580 -20687990 - L2 LINE L2 -423 2891 2599 2481 86 0 0 chr21 14219580 14219884 -20687686 + AluSp SINE Alu 1 304 -9 501 232 228 22 chr21 14219884 14219936 -20687634 - L2 LINE L2 -715 2599 2559 2556 127 27 7 chr21 14222043 14222483 -20685087 + L1PB3 LINE L1 5704 6152 -2 2239 107 0 0 chr21 14222541 14222839 -20684731 - AluSq SINE Alu -15 298 1 771 250 11 0 chr21 14222839 14223019 -20684551 + MER58A DNA MER1_type 42 223 -1 1083 156 194 45 chr21 14223097 14223262 -20684308 + MER46B DNA MER2_type 1 112 -2619 2113 116 0 17 chr21 14223262 14223564 -20684006 + AluSx SINE Alu 1 297 -15 1083 156 194 45 chr21 14223564 14223712 -20683858 + MER46B DNA MER2_type 112 236 0 944 204 70 0 chr21 14224910 14225111 -20682459 + MER20 DNA MER1_type 5 219 0 21 0 0 0 chr21 14225339 14225360 -20682210 + AT_rich Low_complexity Low_complexity 1 21 0 185 310 81 23 chr21 14226626 14226713 -20680857 + MIR SINE MIR 50 141 -67 478 229 119 101 chr21 14227652 14228198 -20679372 + LTR38B LTR ERV1 1 611 0 240 35 0 0 chr21 14229951 14229980 -20677590 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 2197 121 0 3 chr21 14230171 14230476 -20677094 + AluSx SINE Alu 1 304 -8 35 54 0 0 chr21 14231994 14232050 -20675520 + AT_rich Low_complexity Low_complexity 1 56 0 23 78 0 0 chr21 14232094 14232145 -20675425 + AT_rich Low_complexity Low_complexity 1 51 0 1742 143 50 7 chr21 14232673 14232953 -20674617 - AluSx SINE Alu -12 300 9 360 126 19 117 chr21 14235399 14235435 -20672135 + L1MD2 LINE L1 6264 6302 -57 2274 72 6 38 chr21 14235435 14235754 -20671816 - AluY SINE Alu -2 309 1 360 126 19 117 chr21 14235754 14235815 -20671755 + L1MD2 LINE L1 6298 6352 -3 3573 41 2 2 chr21 14235815 14236253 -20671317 - L1PA6 LINE L1 0 6154 5717 2062 141 0 0 chr21 14236294 14236591 -20670979 + AluSx SINE Alu 1 297 -15 189 94 0 0 chr21 14238526 14238558 -20669012 + (TTATA)n Simple_repeat Simple_repeat 5 36 0 252 167 56 11 chr21 14238566 14238699 -20668871 + (TATAA)n Simple_repeat Simple_repeat 1 138 0 347 204 61 10 chr21 14239671 14239769 -20667801 + MER63 DNA MER1_type 649 751 -310 195 227 23 0 chr21 14240115 14240159 -20667411 + MER5A DNA MER1_type 9 53 -136 2346 91 10 0 chr21 14240742 14241050 -20666520 - AluSx SINE Alu -1 311 1 2232 115 0 34 chr21 14241690 14242013 -20665557 + AluSx SINE Alu 1 312 0 972 146 19 0 chr21 14242027 14242185 -20665385 + AluSg/x SINE Alu 119 279 -31 2157 140 0 3 chr21 14242229 14242536 -20665034 - AluSx SINE Alu -4 308 3 803 153 93 0 chr21 14242634 14242784 -20664786 + MER20 DNA MER1_type 56 219 0 1372 162 60 25 chr21 14243177 14243461 -20664109 - AluJo SINE Alu -18 294 1 1855 126 20 31 chr21 14243855 14244189 -20663381 + AluSx SINE Alu 1 312 0 2188 120 0 0 chr21 14244202 14244502 -20663068 + AluSx SINE Alu 6 305 -7 23 68 0 0 chr21 14244737 14244781 -20662789 + AT_rich Low_complexity Low_complexity 1 44 0 262 196 0 0 chr21 14244810 14244866 -20662704 - FLAM SINE Alu 0 133 78 592 299 32 32 chr21 14246449 14246666 -20660904 - MIR SINE MIR -6 256 40 673 256 56 14 chr21 14246945 14247160 -20660410 - MER58A DNA MER1_type 0 224 1 2232 90 3 10 chr21 14247191 14247490 -20660080 - AluSx SINE Alu -10 302 6 2209 120 0 0 chr21 14247733 14248032 -20659538 - AluSg SINE Alu -11 299 1 27 0 0 0 chr21 14248093 14248120 -20659450 + GC_rich Low_complexity Low_complexity 1 27 0 1992 89 0 4 chr21 14248124 14248381 -20659189 + AluY SINE Alu 46 301 -10 561 164 106 0 chr21 14248487 14248591 -20658979 + FLAM_A SINE Alu 20 134 -8 405 102 0 0 chr21 14249107 14249166 -20658404 - Alu SINE Alu -12 300 242 293 307 68 76 chr21 14250555 14250819 -20656751 + L2 LINE L2 2996 3257 -15 1181 225 29 10 chr21 14251302 14251613 -20655957 + L1MB7 LINE L1 5853 6169 -15 2391 90 7 0 chr21 14252210 14252511 -20655059 - AluSx SINE Alu -9 303 1 290 306 254 30 chr21 14252546 14252778 -20654792 - L2 LINE L2 -4 3268 2985 219 114 0 0 chr21 14253029 14253064 -20654506 + (TGG)n Simple_repeat Simple_repeat 3 37 0 297 299 0 0 chr21 14253088 14253205 -20654365 + CT-rich Low_complexity Low_complexity 1 117 0 1741 180 53 27 chr21 14253423 14253834 -20653736 + L1MC2 LINE L1 5911 6332 -12 446 141 0 0 chr21 14254342 14254406 -20653164 - MER5A DNA MER1_type 0 189 126 1523 161 17 47 chr21 14254419 14254717 -20652853 + AluJo SINE Alu 9 297 -15 982 143 25 19 chr21 14254719 14254880 -20652690 + AluJo/FRAM SINE Alu 136 297 -15 239 283 98 11 chr21 14254906 14254998 -20652572 + MER5A DNA MER1_type 67 166 -23 583 177 44 0 chr21 14254919 14255032 -20652538 - MER5A DNA MER1_type -71 118 1 2084 165 25 8 chr21 14257790 14258189 -20649381 + L1MC1 LINE L1 5921 6326 -7 1935 127 65 3 chr21 14259076 14259368 -20648202 + AluSx SINE Alu 1 310 -2 250 329 76 54 chr21 14259879 14260333 -20647237 - L2 LINE L2 -4 3268 2825 456 265 7 37 chr21 14260884 14261020 -20646550 + MER58C DNA MER1_type 39 170 -45 339 309 56 12 chr21 14261494 14261656 -20645914 + L1MC5 LINE L1 7609 7777 -184 503 300 7 61 chr21 14262053 14262330 -20645240 - L2 LINE L2 -39 3274 3013 2490 88 5 59 chr21 14262575 14262950 -20644620 - THE1A LTR MaLR 0 355 1 580 296 78 22 chr21 14263581 14263811 -20643759 + MIR SINE MIR 4 246 -16 35 24 0 0 chr21 14263945 14263987 -20643583 + AT_rich Low_complexity Low_complexity 1 42 0 2537 117 5 5 chr21 14264287 14264662 -20642908 + THE1C LTR MaLR 1 375 0 2303 85 16 0 chr21 14265525 14265831 -20641739 + AluY SINE Alu 1 311 0 374 318 91 51 chr21 14265930 14266166 -20641404 - L2 LINE L2 -3 3310 3058 1529 167 82 11 chr21 14266166 14266436 -20641134 + AluJb SINE Alu 1 289 -23 374 318 91 51 chr21 14266436 14266495 -20641075 - L2 LINE L2 -255 3058 3003 269 333 184 44 chr21 14266773 14267337 -20640233 - L2 LINE L2 -535 2779 2137 4161 124 56 7 chr21 14267909 14268133 -20639437 + L1MA5A LINE L1 5554 5766 -531 246 105 0 0 chr21 14268133 14268171 -20639399 + (TG)n Simple_repeat Simple_repeat 1 38 0 4161 124 56 7 chr21 14268171 14268655 -20638915 + L1MA5A LINE L1 5766 6297 0 25 0 0 0 chr21 14269129 14269154 -20638416 + AT_rich Low_complexity Low_complexity 1 25 0 2156 100 34 0 chr21 14269649 14269940 -20637630 + AluSx SINE Alu 6 306 -6 38 75 0 0 chr21 14270979 14271059 -20636511 + AT_rich Low_complexity Low_complexity 1 80 0 1627 152 87 9 chr21 14271099 14271434 -20636136 - MER46B DNA MER2_type 0 236 1 2330 99 0 7 chr21 14271482 14271785 -20635785 + AluSx SINE Alu 1 301 -11 830 158 58 0 chr21 14271785 14271953 -20635617 + AluSg/x SINE Alu 135 310 0 1741 156 7 46 chr21 14273783 14274090 -20633480 + AluJo SINE Alu 1 295 -17 2055 108 18 0 chr21 14274387 14274694 -20632876 - AluSx SINE Alu 0 312 1 1033 165 231 17 chr21 14274924 14275331 -20632239 + Looper DNA T2_type 1 494 -1064 847 191 0 0 chr21 14275333 14275474 -20632096 + FAM SINE Alu 25 165 -20 2732 169 38 77 chr21 14275596 14275694 -20631876 + Looper DNA T2_type 684 784 -774 2183 92 3 0 chr21 14275694 14276002 -20631568 - AluSp SINE Alu 0 309 1 2732 169 38 77 chr21 14276002 14276664 -20630906 + Looper DNA T2_type 784 1415 -143 2186 118 51 28 chr21 14276990 14277346 -20630224 - THE1B LTR MaLR 0 364 1 1720 117 0 4 chr21 14277374 14277605 -20629965 + AluSq SINE Alu 84 313 0 23 78 0 0 chr21 14278772 14278823 -20628747 + AT_rich Low_complexity Low_complexity 1 51 0 1031 166 80 61 chr21 14278919 14279198 -20628372 + MER33 DNA MER1_type 1 288 -2297 2247 98 0 26 chr21 14279198 14279505 -20628065 + AluSg SINE Alu 1 299 -11 1031 166 80 61 chr21 14279505 14279538 -20628032 + MER33 DNA MER1_type 288 319 -5 587 73 0 0 chr21 14279580 14279662 -20627908 + MER30 DNA MER1_type 112 193 -37 255 274 0 0 chr21 14280490 14280541 -20627029 - L2 LINE L2 -5 3267 3217 24 0 0 0 chr21 14281826 14281850 -20625720 + AT_rich Low_complexity Low_complexity 1 24 0 784 186 6 35 chr21 14283355 14283527 -20624043 - MER20 DNA MER1_type -3 216 50 604 143 41 0 chr21 14284160 14284258 -20623312 + L1MC1 LINE L1 6223 6324 -9 412 165 63 0 chr21 14285229 14285308 -20622262 + L2 LINE L2 3229 3312 -1 225 0 0 0 chr21 14285784 14285809 -20621761 + (T)n Simple_repeat Simple_repeat 1 25 0 187 390 0 0 chr21 14285829 14285911 -20621659 - L2 LINE L2 -636 2678 2597 221 0 0 33 chr21 14286577 14286607 -20620963 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1844 166 0 3 chr21 14287200 14287501 -20620069 - AluJo SINE Alu -12 300 1 259 214 60 60 chr21 14288219 14288303 -20619267 + L1MC1 LINE L1 6244 6327 -6 266 0 29 0 chr21 14288630 14288664 -20618906 + (CA)n Simple_repeat Simple_repeat 1 35 0 371 252 93 53 chr21 14288810 14288961 -20618609 - MIR3 SINE MIR -44 164 8 292 299 75 33 chr21 14289159 14289373 -20618197 - MLT1J LTR MaLR -49 462 240 624 165 8 50 chr21 14289822 14289943 -20617627 + FLAM_A SINE Alu 10 125 -17 2690 7 0 0 chr21 14289963 14290255 -20617315 + AluY SINE Alu 1 292 -19 313 270 56 67 chr21 14290665 14290772 -20616798 - MIR SINE MIR -28 234 128 2479 80 0 6 chr21 14290772 14291084 -20616486 + AluSg SINE Alu 1 310 0 313 270 56 67 chr21 14291084 14291154 -20616416 - MIR SINE MIR -134 128 59 265 243 57 0 chr21 14291149 14291219 -20616351 + MIR SINE MIR 176 249 -13 1014 292 70 23 chr21 14291646 14292043 -20615527 - L2 LINE L2 -54 3259 2844 588 245 7 7 chr21 14292181 14292328 -20615242 - L2 LINE L2 -652 2662 2516 2116 103 14 0 chr21 14293097 14293378 -20614192 + AluSg SINE Alu 1 285 -25 273 89 0 0 chr21 14293378 14293423 -20614147 + (CA)n Simple_repeat Simple_repeat 2 46 0 2111 110 4 0 chr21 14293544 14293858 -20613712 + AluSx SINE Alu 1 315 0 2022 160 3 6 chr21 14293914 14294227 -20613343 - AluJb SINE Alu 0 312 1 5958 179 62 30 chr21 14294227 14295593 -20611977 + L1MC3 LINE L1 6376 7785 0 2191 174 6 60 chr21 14295629 14296000 -20611570 - LTR32 LTR ERVL 0 471 130 2113 123 0 16 chr21 14296000 14296317 -20611253 - AluSx SINE Alu 0 312 1 2191 174 6 60 chr21 14296317 14296428 -20611142 - LTR32 LTR ERVL -341 130 15 312 286 73 51 chr21 14297064 14297242 -20610328 - MER5A DNA MER1_type -1 188 7 502 204 197 0 chr21 14297255 14297392 -20610178 - MER5A DNA MER1_type 0 189 26 942 121 20 161 chr21 14297496 14297794 -20609776 - L1MB3 LINE L1 -45 6138 5883 1365 174 37 31 chr21 14298233 14298555 -20609015 - MER33 DNA MER1_type 0 324 1 1612 168 19 39 chr21 14299522 14299832 -20607738 - AluJo SINE Alu -8 304 1 191 314 153 16 chr21 14304216 14304340 -20603230 - L2 LINE L2 -1053 2261 2121 2105 100 24 0 chr21 14305637 14305927 -20601643 + AluSx SINE Alu 1 297 -15 363 265 51 17 chr21 14306328 14306445 -20601125 - L2 LINE L2 0 3313 3193 2377 83 0 10 chr21 14307046 14307358 -20600212 - AluSq SINE Alu -4 309 1 2409 90 0 0 chr21 14307945 14308256 -20599314 + AluY SINE Alu 1 311 0 440 206 30 46 chr21 14308765 14308896 -20598674 - HAL1 LINE L1 -570 1937 1809 21 57 0 0 chr21 14309576 14309611 -20597959 + AT_rich Low_complexity Low_complexity 1 35 0 2314 77 10 3 chr21 14309927 14310226 -20597344 + AluSp SINE Alu 1 301 -12 2274 115 0 3 chr21 14311005 14311310 -20596260 + AluSx SINE Alu 1 304 -8 2213 107 0 16 chr21 14311650 14311958 -20595612 + AluSg1 SINE Alu 2 304 -5 2523 83 23 10 chr21 14312423 14312820 -20594750 - LTR7 LTR ERV1 -48 402 1 386 348 113 35 chr21 14312870 14313099 -20594471 - HAL1b LINE L1 -594 754 492 2177 105 0 3 chr21 14313099 14313416 -20594154 + AluSq SINE Alu 1 316 0 386 348 113 35 chr21 14313416 14313495 -20594075 - HAL1b LINE L1 -856 492 421 22 70 0 0 chr21 14313647 14313690 -20593880 + AT_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr21 14314109 14314156 -20593414 + AT_rich Low_complexity Low_complexity 1 47 0 519 231 95 68 chr21 14314372 14314593 -20592977 + L1ME4a LINE L1 5672 5898 -223 2445 52 7 7 chr21 14315391 14315701 -20591869 - AluY SINE Alu -1 310 1 254 248 124 0 chr21 14316167 14316280 -20591290 - L1ME4a LINE L1 -3 6118 5992 298 324 29 29 chr21 14318015 14318120 -20589450 + MIR SINE MIR 21 125 -83 23 0 0 0 chr21 14319057 14319080 -20588490 + AT_rich Low_complexity Low_complexity 1 23 0 889 132 0 0 chr21 14319169 14319298 -20588272 - FLAM_C SINE Alu -2 131 3 194 171 0 73 chr21 14319580 14319621 -20587949 - L2 LINE L2 -89 3224 3187 234 0 0 0 chr21 14320666 14320692 -20586878 + (T)n Simple_repeat Simple_repeat 1 26 0 1346 158 0 21 chr21 14321322 14321562 -20586008 - MER46A DNA MER2_type 0 236 2 1933 260 65 71 chr21 14322274 14323147 -20584423 - L2 LINE L2 -2180 1134 267 467 101 30 10 chr21 14323281 14323380 -20584190 + MER96B DNA MER1_type? 245 345 -72 3491 107 12 32 chr21 14323442 14324029 -20583541 + L1MC1 LINE L1 5759 6333 0 2289 83 0 7 chr21 14324998 14325298 -20582272 + AluSc SINE Alu 1 298 -11 51 70 0 0 chr21 14325717 14325817 -20581753 + AT_rich Low_complexity Low_complexity 1 100 0 24 24 0 24 chr21 14325988 14326014 -20581556 + AT_rich Low_complexity Low_complexity 1 27 -14 2255 102 0 3 chr21 14326014 14326308 -20581262 - AluSc SINE Alu -16 293 1 24 24 0 24 chr21 14326308 14326323 -20581247 + AT_rich Low_complexity Low_complexity 27 41 0 760 162 0 0 chr21 14326326 14326443 -20581127 - FLAM_C SINE Alu -16 117 1 1657 141 33 3 chr21 14326447 14326846 -20580724 + MER44D DNA MER2_type 106 605 0 1042 138 6 0 chr21 14327800 14327960 -20579610 + FRAM SINE Alu 6 166 -10 2484 59 3 3 chr21 14328963 14329269 -20578301 + AluY SINE Alu 1 306 -5 48 0 0 0 chr21 14329334 14329382 -20578188 + AT_rich Low_complexity Low_complexity 1 48 0 2373 88 3 0 chr21 14332253 14332561 -20575009 - AluSc SINE Alu 0 309 1 2527 42 0 7 chr21 14333247 14333553 -20574017 - AluY SINE Alu -7 304 1 2144 141 3 0 chr21 14333774 14334080 -20573490 + AluSx SINE Alu 2 308 -4 2029 128 30 3 chr21 14334491 14334789 -20572781 + AluSg SINE Alu 1 306 -4 1238 189 14 76 chr21 14335102 14335456 -20572114 - MLT1A2 LTR MaLR -42 332 1 207 100 0 0 chr21 14336233 14336263 -20571307 + (A)n Simple_repeat Simple_repeat 1 30 0 750 271 71 24 chr21 14336401 14336696 -20570874 + HAL1b LINE L1 620 928 -420 348 216 101 0 chr21 14337704 14337805 -20569765 - FRAM SINE Alu -67 99 1 411 198 60 9 chr21 14338515 14338631 -20568939 + LTR37B LTR ERV1 346 467 -1 883 215 36 72 chr21 14339299 14339634 -20567936 - MER33 DNA MER1_type 0 324 2 2268 91 13 3 chr21 14339768 14340076 -20567494 + AluSq SINE Alu 1 311 -2 2360 128 82 12 chr21 14340380 14340780 -20566790 + MSTA LTR MaLR 1 428 0 1930 134 0 11 chr21 14341333 14341633 -20565937 + AluSg SINE Alu 8 304 0 28 48 0 0 chr21 14341831 14341873 -20565697 + AT_rich Low_complexity Low_complexity 1 42 0 364 235 117 73 chr21 14342189 14342368 -20565202 + L1MC4a LINE L1 5811 5997 -1811 369 263 137 104 chr21 14342433 14342620 -20564950 + L1MC4a LINE L1 6155 6359 -1449 1626 163 43 7 chr21 14342620 14342902 -20564668 + AluJo SINE Alu 1 292 -20 369 263 137 104 chr21 14342902 14343049 -20564521 + L1MC4a LINE L1 6359 6500 -1308 523 174 43 29 chr21 14345457 14345595 -20561975 + MLT1F LTR MaLR 4 143 -399 427 215 19 28 chr21 14345673 14345780 -20561790 + MLT1F LTR MaLR 122 227 -315 23 54 0 0 chr21 14345996 14346033 -20561537 + AT_rich Low_complexity Low_complexity 1 37 0 2087 122 0 7 chr21 14348054 14348348 -20559222 - AluSx SINE Alu -20 292 1 248 88 0 0 chr21 14349190 14349224 -20558346 - HSMAR1 DNA Mariner -1253 34 1 1911 128 48 3 chr21 14349714 14350004 -20557566 - AluSx SINE Alu -9 303 1 23 33 0 0 chr21 14350049 14350079 -20557491 + AT_rich Low_complexity Low_complexity 1 30 0 202 240 20 0 chr21 14350763 14350813 -20556757 + (CATATA)n Simple_repeat Simple_repeat 6 56 0 237 65 0 0 chr21 14350850 14350881 -20556689 + (CA)n Simple_repeat Simple_repeat 2 32 0 371 214 39 39 chr21 14351226 14351329 -20556241 + MLT1H LTR MaLR 431 533 -16 887 194 48 0 chr21 14351453 14351618 -20555952 - AluJo SINE Alu -139 173 1 1999 68 4 4 chr21 14352559 14352807 -20554763 - AluSg SINE Alu -19 291 44 62 36 0 0 chr21 14353874 14353957 -20553613 + AT_rich Low_complexity Low_complexity 1 83 0 563 172 64 69 chr21 14356420 14356624 -20550946 + ORSL DNA AcHobo 21 223 -52 546 117 64 43 chr21 14357767 14357861 -20549709 + MER20 DNA MER1_type 67 162 -57 349 324 85 23 chr21 14358803 14358979 -20548591 + MIR SINE MIR 23 209 -53 2285 99 3 0 chr21 14360355 14360648 -20546922 + AluSg1 SINE Alu 1 294 -15 2239 91 3 10 chr21 14362112 14362444 -20545126 + AluSp SINE Alu 1 313 0 727 114 38 0 chr21 14363298 14363403 -20544167 + FAM SINE Alu 65 173 -12 1717 143 33 27 chr21 14364120 14364420 -20543150 + AluJb SINE Alu 1 302 -10 2164 77 45 3 chr21 14364668 14364955 -20542615 + AluSg SINE Alu 1 299 -11 735 130 96 0 chr21 14365239 14365354 -20542216 - AluJo SINE Alu -100 212 87 2681 187 64 14 chr21 14365380 14366051 -20541519 - MER21B LTR ERV1 -120 743 1 2278 108 3 0 chr21 14367017 14367403 -20540167 + AluSg SINE Alu 1 387 0 1431 99 56 170 chr21 14368094 14368418 -20539152 - AluSx SINE Alu -15 287 1 317 262 35 43 chr21 14369349 14369490 -20538080 + L1MC5 LINE L1 7742 7881 -80 1490 173 52 11 chr21 14369613 14369925 -20537645 + AluJo SINE Alu 1 323 0 324 224 53 0 chr21 14370610 14370686 -20536884 - MER5A DNA MER1_type -1 188 109 1986 88 53 0 chr21 14370809 14371113 -20536457 + AluSc SINE Alu 5 322 0 413 243 155 0 chr21 14372220 14372323 -20535247 + MIR SINE MIR 126 244 -18 291 167 39 39 chr21 14372892 14372970 -20534600 - MIR SINE MIR -62 200 123 1782 166 6 16 chr21 14373678 14373991 -20533579 + AluJo SINE Alu 1 310 -2 786 182 16 0 chr21 14374383 14374504 -20533066 + FLAM_C SINE Alu 1 123 -10 2513 112 65 23 chr21 14374602 14375030 -20532540 - L1MA9 LINE L1 0 6312 5867 2662 128 3 5 chr21 14375109 14375485 -20532085 - THE1C LTR MaLR 0 375 1 291 244 114 83 chr21 14376230 14376423 -20531147 + L3 LINE CR1 1346 1544 -33 1801 126 41 118 chr21 14376423 14376788 -20530782 - MER1B DNA MER1_type 0 337 1 1522 108 0 5 chr21 14377295 14377498 -20530072 + AluSx SINE Alu 52 253 -59 359 218 109 32 chr21 14377551 14377707 -20529863 - L1ME LINE L1 -678 5484 5317 430 209 149 85 chr21 14377726 14377927 -20529643 + L1MC5 LINE L1 7709 7922 -39 342 193 18 128 chr21 14381579 14381688 -20525882 - MER34B LTR ERV1 -464 101 5 385 289 100 37 chr21 14381730 14381789 -20525781 + L2 LINE L2 3111 3165 -148 474 101 0 0 chr21 14381789 14381858 -20525712 + (TAGA)n Simple_repeat Simple_repeat 1 69 0 385 289 100 37 chr21 14381858 14381988 -20525582 + L2 LINE L2 3165 3312 -1 2052 139 59 19 chr21 14382754 14383078 -20524492 - MER1B DNA MER1_type 0 337 1 27 0 0 0 chr21 14383092 14383119 -20524451 + AT_rich Low_complexity Low_complexity 1 27 0 2620 41 0 28 chr21 14383208 14383526 -20524044 + AluY SINE Alu 3 311 0 291 135 0 0 chr21 14383529 14383581 -20523989 + L1M LINE L1 5317 5368 -932 207 0 0 0 chr21 14383582 14383605 -20523965 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 30 0 0 0 chr21 14383811 14383841 -20523729 + AT_rich Low_complexity Low_complexity 1 30 0 3661 155 15 10 chr21 14383922 14384527 -20523043 + L1PB3 LINE L1 5545 6152 -2 693 204 0 0 chr21 14384720 14384833 -20522737 - FLAM_C SINE Alu -25 118 6 248 336 62 9 chr21 14385955 14386068 -20521502 + MIR3 SINE MIR 83 201 -7 1025 208 112 43 chr21 14386107 14386200 -20521370 + MER33 DNA MER1_type 1 86 -2499 1943 134 3 47 chr21 14386200 14386521 -20521049 + AluSx SINE Alu 4 310 -2 1025 208 112 43 chr21 14386521 14386730 -20520840 + MER33 DNA MER1_type 86 324 0 2405 68 0 19 chr21 14386941 14387249 -20520321 + AluY SINE Alu 1 302 -9 25 51 0 0 chr21 14388021 14388060 -20519510 + AT_rich Low_complexity Low_complexity 1 39 0 2268 103 0 0 chr21 14388306 14388597 -20518973 - AluSx SINE Alu -21 291 1 21 0 0 0 chr21 14388937 14388958 -20518612 + AT_rich Low_complexity Low_complexity 1 21 0 2341 75 10 3 chr21 14390314 14390607 -20516963 - AluY SINE Alu -16 295 1 1693 163 35 7 chr21 14393274 14393562 -20514008 + AluJo SINE Alu 1 296 -16 2192 108 3 40 chr21 14394174 14394497 -20513073 + AluSx SINE Alu 1 311 -1 25 31 0 0 chr21 14395089 14395121 -20512449 + AT_rich Low_complexity Low_complexity 1 32 0 2473 80 0 0 chr21 14395193 14395495 -20512075 + AluSg SINE Alu 1 302 -8 2129 76 0 8 chr21 14395836 14396100 -20511470 + AluSx SINE Alu 37 298 -14 390 288 98 15 chr21 14396617 14396749 -20510821 - MIR SINE MIR -118 144 2 908 137 27 0 chr21 14397685 14397831 -20509739 + LTR54 LTR ERV1 336 485 -25 420 55 0 0 chr21 14398100 14398155 -20509415 + (GA)n Simple_repeat Simple_repeat 1 55 0 243 79 0 0 chr21 14398156 14398194 -20509376 + (TG)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr21 14399325 14399346 -20508224 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 215 159 23 0 chr21 14402678 14402722 -20504848 + T-rich Low_complexity Low_complexity 3 47 0 770 177 11 97 chr21 14403671 14403742 -20503828 - MER45A DNA AcHobo -1411 170 94 2378 86 0 3 chr21 14403742 14404043 -20503527 + AluSx SINE Alu 1 300 -12 770 177 11 97 chr21 14404043 14404157 -20503413 - MER45A DNA AcHobo -1487 94 1 2278 31 0 0 chr21 14404193 14404451 -20503119 + AluY SINE Alu 37 294 -17 806 312 88 23 chr21 14404825 14405223 -20502347 - L3 LINE CR1 -52 1525 1102 2271 125 22 17 chr21 14405476 14405837 -20501733 - MLT1B LTR MaLR -14 376 14 2068 162 55 39 chr21 14406146 14406529 -20501041 - MLT1B LTR MaLR 0 390 2 182 61 0 30 chr21 14408039 14408072 -20499498 + (TTAA)n Simple_repeat Simple_repeat 2 33 0 1480 182 12 0 chr21 14408075 14408317 -20499253 - AluJb SINE Alu -65 247 3 22 0 0 0 chr21 14408320 14408342 -20499228 + AT_rich Low_complexity Low_complexity 1 22 0 3970 143 62 3 chr21 14408962 14409596 -20497974 + LTR51 LTR ERV1 1 671 0 810 163 8 0 chr21 14409974 14410097 -20497473 + FLAM_C SINE Alu 4 127 -16 29 0 0 0 chr21 14410097 14410126 -20497444 + AT_rich Low_complexity Low_complexity 1 29 0 427 191 0 0 chr21 14410127 14410195 -20497375 + AluJ/FLAM SINE Alu 2 69 -243 1231 118 0 11 chr21 14410195 14410373 -20497197 + AluSg/x SINE Alu 135 310 0 2074 128 0 16 chr21 14410590 14410902 -20496668 - AluSx SINE Alu -5 307 1 1776 130 12 75 chr21 14411393 14411715 -20495855 - AluSq SINE Alu -11 302 1 2390 186 52 38 chr21 14412042 14412542 -20495028 - MLT2B2 LTR ERVL -8 507 1 374 308 0 28 chr21 14412733 14412876 -20494694 + MER103 DNA DNA 1 139 -27 1848 108 50 25 chr21 14412891 14413170 -20494400 - AluSx SINE Alu -2 310 25 994 102 44 0 chr21 14413177 14413314 -20494256 - AluSq/x SINE Alu -167 146 4 22 0 0 0 chr21 14413522 14413544 -20494026 + AT_rich Low_complexity Low_complexity 1 22 0 2829 138 23 21 chr21 14414390 14414456 -20493114 - MSTA LTR MaLR 0 428 364 1709 135 62 11 chr21 14414456 14414730 -20492840 + AluSg1 SINE Alu 1 288 -21 2829 138 23 21 chr21 14414730 14415090 -20492480 - MSTA LTR MaLR -64 364 1 10212 166 14 13 chr21 14415090 14416740 -20490830 - MSTA-int LTR MaLR 0 1651 1 2489 163 11 32 chr21 14416740 14417175 -20490395 - MSTB LTR MaLR 0 426 1 2390 82 0 13 chr21 14417384 14417699 -20489871 - AluY SINE Alu 0 311 1 180 0 0 0 chr21 14418289 14418309 -20489261 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1668 165 62 7 chr21 14418311 14418584 -20488986 - AluJb SINE Alu -24 288 1 393 279 91 30 chr21 14418648 14418813 -20488757 - MIR3 SINE MIR -1 207 33 355 349 23 0 chr21 14418950 14419079 -20488491 - L3 LINE CR1 -11 1566 1435 196 370 12 0 chr21 14419278 14419359 -20488211 - L3 LINE CR1 -351 1226 1145 3094 257 75 44 chr21 14419444 14419819 -20487751 - L2 LINE L2 -123 3190 2828 2555 139 26 0 chr21 14419819 14420199 -20487371 + MLT1B LTR MaLR 1 390 0 3094 257 75 44 chr21 14420199 14420610 -20486960 - L2 LINE L2 -485 2828 2431 1193 73 33 0 chr21 14420610 14420761 -20486809 - L1PA11 LINE L1 0 6174 6019 3094 257 75 44 chr21 14420761 14420964 -20486606 - L2 LINE L2 -882 2431 2236 1851 150 4 0 chr21 14420964 14421237 -20486333 + AluSx SINE Alu 1 274 -38 3094 257 75 44 chr21 14421237 14421677 -20485893 - L2 LINE L2 -1077 2236 1728 1072 162 12 0 chr21 14421693 14421866 -20485704 - AluJb SINE Alu -13 299 125 515 122 0 14 chr21 14421869 14421943 -20485627 + AluJb SINE Alu 64 136 -176 721 168 0 0 chr21 14421943 14422050 -20485520 + U6 snRNA snRNA 1 107 0 1047 135 0 0 chr21 14422067 14422208 -20485362 + AluJb SINE Alu 120 260 -52 681 134 10 0 chr21 14422215 14422312 -20485258 - AluJ/FLAM SINE Alu -213 99 2 479 295 60 0 chr21 14422321 14422487 -20485083 - L2 LINE L2 -1611 1703 1528 756 217 29 17 chr21 14422518 14422578 -20484992 - MER3 DNA MER1_type -26 183 125 2018 117 13 36 chr21 14422578 14422887 -20484683 + AluSx SINE Alu 1 302 -10 756 217 29 17 chr21 14422887 14423001 -20484569 - MER3 DNA MER1_type -84 125 7 421 208 9 38 chr21 14423018 14423124 -20484446 - L2 LINE L2 -1814 1500 1398 1365 169 145 0 chr21 14423293 14423542 -20484028 - AluJb SINE Alu -27 285 1 1025 182 16 83 chr21 14423542 14423670 -20483900 + AluJo SINE Alu 19 154 -158 2466 83 0 0 chr21 14423670 14423972 -20483598 + AluY SINE Alu 1 302 -9 1025 182 16 83 chr21 14423972 14423987 -20483583 + AluJo SINE Alu 154 168 -144 1971 147 65 42 chr21 14423987 14424342 -20483228 - THE1B LTR MaLR 0 364 2 1025 182 16 83 chr21 14424342 14424450 -20483120 + AluJo SINE Alu 168 254 -58 21 0 0 0 chr21 14424464 14424485 -20483085 + AT_rich Low_complexity Low_complexity 1 21 0 388 259 45 27 chr21 14424485 14424597 -20482973 - L2 LINE L2 -2070 1244 1131 473 228 6 102 chr21 14424610 14424777 -20482793 - MER5B DNA MER1_type -1 177 27 1785 127 0 88 chr21 14424788 14425096 -20482474 - AluSx SINE Alu -11 301 21 334 283 17 25 chr21 14425252 14425372 -20482198 - L2 LINE L2 -3111 203 85 552 183 0 107 chr21 14425537 14425668 -20481902 - FLAM_C SINE Alu -25 118 2 774 171 61 12 chr21 14425669 14425833 -20481737 - MER33 DNA MER1_type -131 193 22 288 300 87 61 chr21 14427034 14427264 -20480306 + MIR SINE MIR 21 256 -6 3012 161 50 19 chr21 14427532 14428072 -20479498 - L1MB8 LINE L1 -1 6177 5621 246 274 0 32 chr21 14428169 14428231 -20479339 - L2 LINE L2 -16 3297 3238 2278 98 0 0 chr21 14428451 14428736 -20478834 + AluSx SINE Alu 1 285 -27 474 75 0 0 chr21 14428736 14428803 -20478767 + (CATA)n Simple_repeat Simple_repeat 2 68 0 1520 192 49 0 chr21 14428818 14428987 -20478583 - AluJo SINE Alu -9 303 113 180 0 0 0 chr21 14428987 14429007 -20478563 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1520 192 49 0 chr21 14429007 14429124 -20478446 - AluJo SINE Alu -199 113 3 272 250 12 24 chr21 14429532 14429616 -20477954 + MIR SINE MIR 67 149 -113 2355 93 0 0 chr21 14429698 14429998 -20477572 - AluY SINE Alu -9 302 3 608 218 14 14 chr21 14430092 14430234 -20477336 - LTR16A1 LTR ERVL -1 456 315 645 220 0 0 chr21 14431876 14431994 -20475576 - FLAM_A SINE Alu -15 118 1 2021 153 10 0 chr21 14432029 14432337 -20475233 + AluJb SINE Alu 1 311 -1 23 78 0 0 chr21 14432638 14432689 -20474881 + AT_rich Low_complexity Low_complexity 1 51 0 225 355 36 0 chr21 14433349 14433459 -20474111 - MIR3 SINE MIR -33 175 62 35 24 0 0 chr21 14433738 14433780 -20473790 + AT_rich Low_complexity Low_complexity 1 42 0 391 279 74 0 chr21 14434356 14434478 -20473092 - L1MC4 LINE L1 -154 7888 7758 1465 248 38 7 chr21 14434512 14434932 -20472638 - L1MC4 LINE L1 -372 7670 7238 2358 116 0 0 chr21 14434941 14435284 -20472286 - AluSq SINE Alu 0 343 1 1368 307 38 14 chr21 14435362 14435863 -20471707 - L1MD3 LINE L1 -1039 6956 6444 2268 84 0 39 chr21 14435995 14436303 -20471267 - AluY SINE Alu -15 296 1 2521 190 55 21 chr21 14436517 14437030 -20470540 + MLT2B3 LTR ERVL 1 412 -32 772 237 43 16 chr21 14437028 14437214 -20470356 + MER41C LTR ERV1 8 198 -356 1268 210 63 4 chr21 14437214 14437466 -20470104 + AluJb SINE Alu 1 267 -45 807 213 6 12 chr21 14437668 14437837 -20469733 + MER41D LTR ERV1 390 557 0 258 75 75 113 chr21 14437846 14437899 -20469671 + MLT2B3 LTR ERVL 504 554 0 262 279 0 0 chr21 14438505 14438566 -20469004 + MIR SINE MIR 34 94 -168 38 39 0 0 chr21 14439602 14439654 -20467916 + AT_rich Low_complexity Low_complexity 1 52 0 2238 120 0 7 chr21 14439654 14439955 -20467615 - AluSx SINE Alu -13 299 1 4043 175 16 44 chr21 14440257 14440451 -20467119 - MER72 LTR ERV1 0 722 524 1817 115 0 4 chr21 14440451 14440721 -20466849 - AluSx SINE Alu 0 308 40 1966 133 7 0 chr21 14440725 14441010 -20466560 - AluSx SINE Alu -21 291 5 4043 175 16 44 chr21 14441010 14441552 -20466018 - MER72 LTR ERV1 -201 521 1 405 289 0 18 chr21 14441626 14441740 -20465830 - LTR16C LTR ERVL 0 491 380 291 233 0 0 chr21 14442227 14442287 -20465283 + MER34 LTR ERV1 6 65 -477 330 219 19 103 chr21 14442340 14442495 -20465075 + LTR23-int LTR ERV1 993 1134 -3989 2801 72 12 0 chr21 14442656 14443002 -20464568 + L1PA6 LINE L1 5799 6148 -6 686 157 9 0 chr21 14443013 14443121 -20464449 + MER34B LTR ERV1 457 565 0 2454 138 12 22 chr21 14443430 14443830 -20463740 - MER61B LTR ERV1 -29 396 1 1696 186 7 14 chr21 14444549 14444845 -20462725 - AluJo SINE Alu -18 294 1 1994 109 0 4 chr21 14444957 14445231 -20462339 + AluSx SINE Alu 1 273 -39 213 39 0 0 chr21 14445240 14445266 -20462304 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 180 0 0 0 chr21 14445270 14445290 -20462280 + (GAAA)n Simple_repeat Simple_repeat 1 20 0 1815 116 3 69 chr21 14445949 14446276 -20461294 - AluSx SINE Alu 0 307 1 25 31 0 0 chr21 14446286 14446318 -20461252 + AT_rich Low_complexity Low_complexity 1 32 0 2567 60 0 0 chr21 14446412 14446713 -20460857 + AluY SINE Alu 1 301 -10 556 213 44 66 chr21 14446727 14446910 -20460660 - L1MC5 LINE L1 -48 7913 7735 911 164 6 30 chr21 14446912 14447077 -20460493 - FRAM SINE Alu -5 171 11 2481 120 19 25 chr21 14448307 14448673 -20458897 + THE1B LTR MaLR 1 364 0 12625 89 6 1 chr21 14448673 14450244 -20457326 + THE1B-int LTR MaLR 1 1579 -1 2370 134 19 25 chr21 14450245 14450611 -20456959 + THE1B LTR MaLR 1 364 0 1334 118 8 55 chr21 14450777 14451015 -20456555 - L1MC2 LINE L1 -34 6310 6084 1470 221 66 63 chr21 14451015 14451379 -20456191 + MER34 LTR ERV1 1 353 -189 2250 128 50 36 chr21 14451379 14451738 -20455832 - THE1B LTR MaLR 0 364 1 1470 221 66 63 chr21 14451738 14451929 -20455641 + MER34 LTR ERV1 353 542 0 1121 200 32 6 chr21 14451933 14452172 -20455398 - L1MC2 LINE L1 -110 6052 5825 552 309 37 34 chr21 14452597 14452895 -20454675 - L2 LINE L2 -1 3312 3014 221 341 12 0 chr21 14453344 14453429 -20454141 - MIR SINE MIR -70 192 107 1779 134 26 22 chr21 14453593 14453937 -20453633 - MER4A LTR ERV1 0 664 261 524 132 0 12 chr21 14453937 14454020 -20453550 - MER4A LTR ERV1 -566 98 17 2225 114 0 0 chr21 14454021 14454318 -20453252 - AluSx SINE Alu -2 310 14 1724 146 68 4 chr21 14455374 14455654 -20451916 + AluJb SINE Alu 1 298 -14 382 375 30 6 chr21 14456509 14456677 -20450893 + MER5A DNA MER1_type 2 173 -16 21 36 0 0 chr21 14457215 14457243 -20450327 + AT_rich Low_complexity Low_complexity 1 28 0 327 305 35 9 chr21 14457353 14457470 -20450100 + MIR SINE MIR 47 165 -62 2060 84 92 7 chr21 14457488 14457772 -20449798 + AluY SINE Alu 1 308 -3 849 215 0 0 chr21 14457793 14458109 -20449461 + FRAM SINE Alu 9 324 0 2688 64 116 15 chr21 14459115 14459521 -20448049 - LTR7 LTR ERV1 -2 448 2 2075 91 81 24 chr21 14459522 14459894 -20447676 - HERVH LTR ERV1 0 7713 7321 1238 113 42 9 chr21 14459891 14460104 -20447466 - HERVH LTR ERV1 -1894 5819 5600 3787 143 42 2 chr21 14460105 14460741 -20446829 - HERVH LTR ERV1 -2564 5149 4488 4957 116 8 35 chr21 14460743 14461621 -20445949 - HERVH LTR ERV1 -3720 3993 3140 14130 94 14 21 chr21 14461615 14464315 -20443255 - HERVH LTR ERV1 -4726 2987 2 2617 74 119 10 chr21 14464324 14464728 -20442842 - LTR7 LTR ERV1 -2 448 1 183 256 26 0 chr21 14464882 14464921 -20442649 - L2 LINE L2 -20 3252 3213 204 329 0 13 chr21 14469509 14469585 -20437985 + (TG)n Simple_repeat Simple_repeat 1 75 0 735 204 0 0 chr21 14470305 14470437 -20437133 - FLAM_C SINE Alu -5 138 7 24 53 0 0 chr21 14470437 14470475 -20437095 + AT_rich Low_complexity Low_complexity 1 38 0 313 324 9 0 chr21 14471116 14471221 -20436349 + MIR3 SINE MIR 99 204 -4 213 262 167 0 chr21 14471673 14471767 -20435803 + MIR SINE MIR 15 115 -93 1399 164 44 60 chr21 14472179 14472341 -20435229 - L1MB8 LINE L1 -5 6173 6010 2329 46 16 29 chr21 14472341 14472647 -20434923 - AluY SINE Alu -9 302 1 1399 164 44 60 chr21 14472647 14472851 -20434719 - L1MB8 LINE L1 -168 6010 5813 3846 188 43 19 chr21 14472875 14473816 -20433754 - L1MB3 LINE L1 0 6183 5211 1994 179 49 0 chr21 14473821 14474251 -20433319 + L1 LINE L1 4573 5023 -1123 856 79 8 0 chr21 14474247 14474373 -20433197 - L1M4 LINE L1 -698 5486 5360 295 296 70 0 chr21 14474451 14474566 -20433004 + L1MC/D LINE L1 5614 5736 -2072 3261 129 4 17 chr21 14474685 14474874 -20432696 - Tigger4(Zombi) DNA MER2_type 0 2731 2541 2192 107 13 0 chr21 14474874 14475174 -20432396 - AluSx SINE Alu -8 304 1 3261 129 4 17 chr21 14475174 14475519 -20432051 - Tigger4(Zombi) DNA MER2_type -190 2541 2204 711 177 0 0 chr21 14475514 14475638 -20431932 - Tigger4(Zombi) DNA MER2_type -2607 124 1 1443 143 155 24 chr21 14476364 14476566 -20431004 + MSTA LTR MaLR 1 175 -253 4256 98 32 7 chr21 14476566 14477185 -20430385 + MER41B LTR ERV1 1 635 0 1443 143 155 24 chr21 14477185 14477317 -20430253 + MSTA LTR MaLR 175 379 -49 289 161 18 18 chr21 14477534 14477590 -20429980 + L2 LINE L2 3217 3272 0 2284 101 0 3 chr21 14477679 14477975 -20429595 + AluSq SINE Alu 1 295 -18 240 213 33 0 chr21 14478105 14478166 -20429404 + (CA)n Simple_repeat Simple_repeat 2 64 0 205 200 0 0 chr21 14478364 14478404 -20429166 + (TA)n Simple_repeat Simple_repeat 1 40 0 496 277 47 25 chr21 14478654 14478928 -20428642 - HAL1 LINE L1 -63 2444 2165 385 198 115 10 chr21 14478968 14479064 -20428506 - HAL1 LINE L1 -382 2125 2020 1151 236 23 81 chr21 14479462 14479708 -20427862 - HAL1 LINE L1 -494 2013 1754 726 194 69 63 chr21 14479708 14479807 -20427763 + MER45A DNA AcHobo 2 104 -1477 2244 113 0 7 chr21 14479807 14480116 -20427454 + AluSx SINE Alu 1 307 -5 726 194 69 63 chr21 14480116 14480191 -20427379 + MER45A DNA AcHobo 104 177 -1 1151 236 23 81 chr21 14480191 14480355 -20427215 - HAL1 LINE L1 -753 1754 1633 2293 72 7 0 chr21 14480355 14480660 -20426910 - L1PA8 LINE L1 0 6172 5866 1151 236 23 81 chr21 14480660 14480731 -20426839 - HAL1 LINE L1 -874 1633 1559 702 123 0 0 chr21 14480733 14480839 -20426731 - AluSg/x SINE Alu -4 305 200 464 184 18 18 chr21 14480849 14480963 -20426607 - HAL1 LINE L1 -952 1555 1442 414 270 135 27 chr21 14480964 14481112 -20426458 - HAL1 LINE L1 -2334 173 10 1119 149 0 0 chr21 14481238 14481399 -20426171 + AluSg/x SINE Alu 143 303 -7 2256 88 0 0 chr21 14483967 14484252 -20423318 + AluSc SINE Alu 17 301 -8 229 282 26 64 chr21 14484557 14484713 -20422857 + MIR SINE MIR 66 215 -47 21 0 0 0 chr21 14486071 14486092 -20421478 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr21 14486223 14486250 -20421320 + AT_rich Low_complexity Low_complexity 1 27 0 1810 155 44 12 chr21 14486494 14486835 -20420735 - MLT1A1 LTR MaLR -13 352 1 470 312 94 65 chr21 14486865 14487287 -20420283 - L1ME4a LINE L1 -161 5960 5523 2328 93 6 19 chr21 14487287 14487600 -20419970 - AluSx SINE Alu -1 311 3 470 312 94 65 chr21 14487600 14487635 -20419935 - L1ME4a LINE L1 -598 5523 5490 2373 100 0 0 chr21 14487708 14488008 -20419562 + AluSx SINE Alu 1 300 -12 749 226 68 0 chr21 14488086 14488263 -20419307 + MER5A DNA MER1_type 1 189 0 496 279 80 52 chr21 14488555 14489001 -20418569 - L1ME4a LINE L1 -708 5454 4999 1871 138 118 67 chr21 14489405 14489811 -20417759 + MSTA LTR MaLR 2 428 0 2113 78 57 3 chr21 14489942 14490225 -20417345 + AluY SINE Alu 1 298 -13 4340 221 53 60 chr21 14490235 14490728 -20416842 - L1ME1 LINE L1 -5 6161 5666 2423 77 3 0 chr21 14490728 14491026 -20416544 + AluSc SINE Alu 1 299 -10 4340 221 53 60 chr21 14491026 14491142 -20416428 - L1ME1 LINE L1 -500 5666 5551 1025 208 39 105 chr21 14491142 14491531 -20416039 + MLT1A1 LTR MaLR 1 363 -2 4340 221 53 60 chr21 14491531 14492793 -20414777 - L1ME1 LINE L1 -615 5551 4282 243 0 0 0 chr21 14492793 14492820 -20414750 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4340 221 53 60 chr21 14492820 14493050 -20414520 - L1ME1 LINE L1 -1884 4282 4052 2128 110 0 3 chr21 14493050 14493341 -20414229 - AluSg SINE Alu -20 290 1 4340 221 53 60 chr21 14493341 14493682 -20413888 - L1ME1 LINE L1 -2114 4052 3669 534 276 35 0 chr21 14494904 14495074 -20412496 + L1MDb LINE L1 896 1071 -5338 2293 223 48 22 chr21 14495113 14495884 -20411686 + L1MDb LINE L1 1132 1922 -4484 492 291 64 39 chr21 14496203 14496560 -20411010 - HAL1b LINE L1 -900 448 83 2498 49 0 13 chr21 14496587 14496891 -20410679 - AluY SINE Alu -10 301 2 239 190 89 0 chr21 14497921 14498000 -20409570 + (TATTG)n Simple_repeat Simple_repeat 3 88 0 359 351 96 0 chr21 14498051 14498302 -20409268 - L1MC/D LINE L1 -2099 5709 5435 307 238 191 16 chr21 14498783 14498909 -20408661 - L1MC/D LINE L1 -1328 4818 4671 290 288 7 43 chr21 14498924 14498980 -20408590 - L1MC/D LINE L1 -1537 4609 4553 3904 176 48 20 chr21 14498980 14499743 -20407827 - LTR1 LTR ERV1 0 785 1 290 288 7 43 chr21 14499743 14499825 -20407745 - L1MC/D LINE L1 -1593 4553 4476 23 33 0 0 chr21 14501167 14501197 -20406373 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr21 14501443 14501482 -20406088 + AT_rich Low_complexity Low_complexity 1 39 0 332 245 43 0 chr21 14501483 14501577 -20405993 - L1ME2 LINE L1 -27 6137 6040 207 0 0 0 chr21 14501590 14501613 -20405957 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1671 148 63 11 chr21 14501613 14501883 -20405687 - AluJo SINE Alu -28 284 1 287 240 40 0 chr21 14501993 14502068 -20405502 - L1ME2 LINE L1 -2213 5595 5518 201 74 0 0 chr21 14502192 14502219 -20405351 + (TG)n Simple_repeat Simple_repeat 2 28 0 326 277 107 68 chr21 14502678 14502855 -20404715 + L1M3c LINE L1 527 710 -5953 884 316 74 35 chr21 14502908 14503341 -20404229 + L1M3c LINE L1 566 1015 -5638 298 273 0 15 chr21 14503676 14503742 -20403828 + L1MA7 LINE L1 280 344 -6309 5468 246 32 21 chr21 14503782 14506341 -20401229 + L1MA7 LINE L1 927 3202 -3530 1643 203 0 7 chr21 14506341 14506642 -20400928 - AluJb SINE Alu -10 302 4 5468 246 32 21 chr21 14506642 14507086 -20400484 + L1MA7 LINE L1 3202 3639 -3093 4579 168 45 11 chr21 14507080 14508380 -20399190 + L1MA7 LINE L1 5492 6833 -44 25 0 0 0 chr21 14508852 14508877 -20398693 + AT_rich Low_complexity Low_complexity 1 25 0 2132 110 0 17 chr21 14510742 14511043 -20396527 + AluSc SINE Alu 1 296 -13 189 0 0 0 chr21 14511801 14511822 -20395748 + (A)n Simple_repeat Simple_repeat 1 21 0 223 290 129 21 chr21 14512573 14512666 -20394904 + MIR3 SINE MIR 89 191 -17 483 206 127 16 chr21 14512693 14512819 -20394751 - Charlie2a DNA MER1_type -6 2856 2717 885 198 50 0 chr21 14512832 14513014 -20394556 - Charlie2a DNA MER1_type -1204 1658 1468 1052 258 16 61 chr21 14513101 14513477 -20394093 - Charlie2a DNA MER1_type -2397 385 27 328 255 193 14 chr21 14513805 14513950 -20393620 + MIR SINE MIR 3 173 -89 246 270 70 50 chr21 14514011 14514111 -20393459 + LTR33 LTR ERVL 79 180 -341 433 329 39 0 chr21 14514275 14514430 -20393140 - HERV16 LTR ERVL -3161 1835 1675 797 280 17 41 chr21 14514526 14514819 -20392751 - HERV16 LTR ERVL -3862 1134 849 861 295 27 0 chr21 14514915 14515173 -20392397 - HERV16 LTR ERVL -4731 265 1 568 278 42 75 chr21 14515176 14515246 -20392324 - LTR16A1 LTR ERVL -3 454 383 2520 56 0 13 chr21 14515246 14515552 -20392018 + AluY SINE Alu 1 302 -9 568 278 42 75 chr21 14515552 14515866 -20391704 - LTR16A1 LTR ERVL -74 383 83 2541 46 7 0 chr21 14516326 14516630 -20390940 + AluY SINE Alu 1 306 -5 2175 81 0 65 chr21 14517863 14518184 -20389386 - AluY SINE Alu -11 300 1 2479 63 0 3 chr21 14518664 14518964 -20388606 - AluY SINE Alu -12 299 1 458 235 0 0 chr21 14519525 14519610 -20387960 + MER20 DNA MER1_type 2 86 -133 1022 261 15 8 chr21 14519659 14519926 -20387644 - MLT1G1 LTR MaLR -274 275 5 23 0 0 0 chr21 14520103 14520126 -20387444 + AT_rich Low_complexity Low_complexity 1 23 0 780 129 0 0 chr21 14520184 14520331 -20387239 + (TATG)n Simple_repeat Simple_repeat 2 148 0 1976 141 0 43 chr21 14520760 14521086 -20386484 - AluJb SINE Alu 0 312 1 1413 268 34 15 chr21 14521451 14521862 -20385708 - LTR16A LTR ERVL 0 450 32 468 201 129 82 chr21 14522464 14522658 -20384912 + MIR SINE MIR 1 203 -59 314 264 33 16 chr21 14522967 14523088 -20384482 - MIR SINE MIR -17 245 123 22 35 0 0 chr21 14524313 14524342 -20383228 + AT_rich Low_complexity Low_complexity 1 29 0 292 320 57 25 chr21 14525327 14525449 -20382121 + MLT1K LTR MaLR 123 248 -340 246 158 50 40 chr21 14525709 14525810 -20381760 + (TTATA)n Simple_repeat Simple_repeat 3 104 0 436 261 33 7 chr21 14526070 14526223 -20381347 - L1MD3 LINE L1 -10 7985 7829 563 39 13 0 chr21 14526232 14526310 -20381260 + (TTATA)n Simple_repeat Simple_repeat 2 80 0 2137 108 0 3 chr21 14526310 14526597 -20380973 - AluSx SINE Alu -26 286 1 232 130 0 101 chr21 14526706 14526775 -20380795 + L1MCa LINE L1 2006 2067 -4359 21 0 0 0 chr21 14526899 14526920 -20380650 + AT_rich Low_complexity Low_complexity 1 21 0 265 157 0 0 chr21 14526920 14526971 -20380599 - L1MA4 LINE L1 -3 6297 6247 1584 164 25 50 chr21 14526967 14527321 -20380249 - L1M2 LINE L1 -4692 2157 1813 2091 148 0 0 chr21 14527321 14527625 -20379945 - AluSx SINE Alu -6 306 3 1584 164 25 50 chr21 14527625 14527672 -20379898 - L1M2 LINE L1 -5036 1813 1766 2373 149 15 4 chr21 14527659 14528164 -20379406 - L1P4 LINE L1 -501 5664 5153 3191 127 6 20 chr21 14528201 14528706 -20378864 + L1PA16 LINE L1 5660 6157 -9 34 24 0 0 chr21 14528744 14528785 -20378785 + AT_rich Low_complexity Low_complexity 1 41 0 3194 240 37 19 chr21 14528788 14530060 -20377510 - L1ME1 LINE L1 -27 6139 4847 3200 166 64 53 chr21 14530031 14530596 -20376974 + L1MC1 LINE L1 5164 5739 -594 2087 109 21 0 chr21 14530596 14530879 -20376691 - AluSx SINE Alu -19 293 5 3200 166 64 53 chr21 14530879 14531176 -20376394 + L1MC1 LINE L1 5739 6031 -302 301 186 20 118 chr21 14531179 14531246 -20376324 - L1ME1 LINE L1 -1286 4860 4805 2116 125 10 13 chr21 14531246 14531559 -20376011 - AluSx SINE Alu 0 312 1 301 186 20 118 chr21 14531559 14531593 -20375977 - L1ME1 LINE L1 -1341 4805 4769 2462 190 80 16 chr21 14531656 14531830 -20375740 - Tigger6a DNA MER2_type -927 670 509 2179 121 134 13 chr21 14531830 14532210 -20375360 - MSTA LTR MaLR 0 428 3 2462 190 80 16 chr21 14532210 14532582 -20374988 - Tigger6a DNA MER2_type -1088 509 89 2111 131 76 15 chr21 14532586 14532929 -20374641 + THE1B LTR MaLR 1 364 0 250 164 0 0 chr21 14532929 14532978 -20374592 + L1P LINE L1 2977 3025 -3121 632 209 8 0 chr21 14533024 14533153 -20374417 + Tigger6 DNA MER2_type 14 143 -1454 1037 87 20 0 chr21 14533155 14533304 -20374266 - THE1B-int LTR MaLR -1428 152 1 2019 125 36 16 chr21 14533304 14533607 -20373963 - THE1B LTR MaLR 0 364 56 2443 261 30 8 chr21 14533617 14534706 -20372864 - L1MDa LINE L1 -3164 3376 2261 228 224 17 0 chr21 14535522 14535580 -20371990 + (TG)n Simple_repeat Simple_repeat 2 60 0 1749 236 28 20 chr21 14536915 14537793 -20369777 + L1PB1 LINE L1 6 932 -5931 13906 200 27 8 chr21 14537789 14541253 -20366317 + L1PB1 LINE L1 1568 5180 -1687 219 36 0 0 chr21 14541253 14541281 -20366289 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 13906 200 27 8 chr21 14541281 14542618 -20364952 + L1PB1 LINE L1 5180 6491 -376 708 240 0 0 chr21 14542682 14542861 -20364709 + (TA)n Simple_repeat Simple_repeat 1 179 0 256 260 0 0 chr21 14542861 14542911 -20364659 + (CA)n Simple_repeat Simple_repeat 1 50 0 577 186 60 0 chr21 14542912 14543079 -20364491 + (CATA)n Simple_repeat Simple_repeat 2 178 0 314 250 0 77 chr21 14543090 14543187 -20364383 - L1MC4 LINE L1 -1339 6703 6613 2251 148 0 5 chr21 14543187 14543558 -20364012 + L1PB1 LINE L1 6498 6866 -1 384 302 108 0 chr21 14543693 14543822 -20363748 - MLT1I LTR MaLR -6 403 261 398 310 46 35 chr21 14543949 14544123 -20363447 + MIR3 SINE MIR 23 198 -10 2081 136 24 63 chr21 14544210 14544636 -20362934 + L1MA3 LINE L1 5895 6303 -2 2114 118 0 7 chr21 14544755 14545051 -20362519 + AluSg SINE Alu 1 294 -16 2304 85 3 0 chr21 14546167 14546461 -20361109 - AluSp SINE Alu -18 295 1 2901 59 83 29 chr21 14548016 14548358 -20359212 - L1PA5 LINE L1 -1 6153 5782 2360 97 0 0 chr21 14548358 14548666 -20358904 - AluY SINE Alu -3 308 1 2901 59 83 29 chr21 14548666 14548744 -20358826 - L1PA5 LINE L1 -372 5782 5710 1216 104 27 32 chr21 14549244 14549465 -20358105 - L1MA7 LINE L1 -6 6285 6066 274 56 0 0 chr21 14549465 14549501 -20358069 + L1MA7 LINE L1 6032 6067 -224 2509 62 0 0 chr21 14550520 14550824 -20356746 + AluY SINE Alu 1 304 -7 820 248 98 76 chr21 14551050 14551562 -20356008 - L1ME4a LINE L1 -70 6051 5529 745 327 51 10 chr21 14552156 14552468 -20355102 + LTR16C LTR ERVL 167 491 0 2948 281 49 62 chr21 14552532 14553120 -20354450 - L2 LINE L2 -1 3312 2718 1319 94 65 37 chr21 14553120 14553142 -20354428 - L1MA4 LINE L1 -11 6289 6269 2204 97 3 0 chr21 14553142 14553431 -20354139 + AluSc SINE Alu 1 290 -19 1319 94 65 37 chr21 14553431 14553653 -20353917 - L1MA4 LINE L1 -31 6269 6038 2948 281 49 62 chr21 14553653 14554261 -20353309 - L2 LINE L2 -595 2718 2133 2032 170 8 20 chr21 14554261 14554656 -20352914 - MLT1B LTR MaLR 0 390 1 2948 281 49 62 chr21 14554656 14555014 -20352556 - L2 LINE L2 -1180 2133 1772 294 206 16 48 chr21 14555166 14555229 -20352341 + MLT1E2 LTR MaLR 1 61 -565 247 235 0 29 chr21 14555398 14555466 -20352104 + LTR67 LTR ERVL 457 522 -35 1897 230 75 25 chr21 14555584 14556101 -20351469 + MLT2B3 LTR ERVL 1 543 -11 1741 166 7 3 chr21 14556194 14556484 -20351086 + AluJo SINE Alu 4 294 -18 333 283 66 0 chr21 14557099 14557205 -20350365 + LTR16A LTR ERVL 230 342 -108 435 237 64 35 chr21 14557823 14557996 -20349574 - L2 LINE L2 -109 3204 3027 546 326 37 12 chr21 14558209 14558451 -20349119 + L2 LINE L2 3023 3270 -43 1846 164 3 7 chr21 14558818 14559116 -20348454 + AluJo SINE Alu 6 302 -10 7199 53 0 0 chr21 14559315 14560403 -20347167 - L1PA6 LINE L1 -1 6153 5065 1760 158 11 49 chr21 14560717 14561066 -20346504 - MLT1B LTR MaLR -54 336 1 24 0 0 0 chr21 14561751 14561775 -20345795 + AT_rich Low_complexity Low_complexity 1 24 0 2135 105 7 0 chr21 14561775 14562060 -20345510 - AluSx SINE Alu -25 287 1 318 305 42 72 chr21 14562060 14562118 -20345452 - MIR SINE MIR -99 163 105 2023 189 8 8 chr21 14562118 14562483 -20345087 - MLT1A1 LTR MaLR 0 365 1 318 305 42 72 chr21 14562483 14562591 -20344979 - MIR SINE MIR -157 105 2 23 0 0 0 chr21 14562910 14562933 -20344637 + AT_rich Low_complexity Low_complexity 1 23 0 22419 151 28 18 chr21 14563470 14565727 -20341843 + L1MA3 LINE L1 10 2242 -5482 1980 145 0 0 chr21 14565727 14566037 -20341533 + AluSx SINE Alu 1 310 0 22419 151 28 18 chr21 14566037 14566102 -20341468 + L1MA3 LINE L1 2242 2305 -5419 1888 132 45 60 chr21 14566102 14566244 -20341326 - L1MA3 LINE L1 0 6305 6162 396 0 0 0 chr21 14566244 14566288 -20341282 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 1928 104 0 70 chr21 14566288 14566587 -20340983 - AluY SINE Alu -31 280 3 1888 132 45 60 chr21 14566587 14566844 -20340726 - L1MA3 LINE L1 -141 6164 5911 22419 151 28 18 chr21 14566844 14567235 -20340335 + L1MA3 LINE L1 2305 2690 -5034 2340 115 0 3 chr21 14567235 14567548 -20340022 + AluSx SINE Alu 1 312 0 22419 151 28 18 chr21 14567548 14571860 -20335710 + L1MA3 LINE L1 2690 7118 -606 5224 159 0 2 chr21 14571877 14572738 -20334832 - L1PA15 LINE L1 -4 6161 5303 1242 131 0 19 chr21 14572738 14572950 -20334620 + L1MA3 LINE L1 7515 7724 0 28 79 0 0 chr21 14573009 14573072 -20334498 + AT_rich Low_complexity Low_complexity 1 63 0 1066 262 139 31 chr21 14573694 14574148 -20333422 + MLT1D LTR MaLR 3 505 0 274 259 27 54 chr21 14574416 14574528 -20333042 - L1ME3 LINE L1 -64 6098 5990 975 172 0 0 chr21 14574566 14574711 -20332859 + AluJb SINE Alu 124 268 -44 216 0 0 0 chr21 14574737 14574761 -20332809 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1775 241 35 16 chr21 14574781 14575417 -20332153 - L1ME3 LINE L1 -248 5922 5288 26 64 0 0 chr21 14576290 14576337 -20331233 + AT_rich Low_complexity Low_complexity 1 47 0 1545 160 47 4 chr21 14579914 14580170 -20327400 - AluJb SINE Alu -9 303 37 2213 123 22 25 chr21 14581570 14581935 -20325635 + THE1B LTR MaLR 1 364 0 230 279 37 93 chr21 14582258 14582327 -20325243 - MLT1J1 LTR MaLR -268 178 107 518 273 106 15 chr21 14582327 14582525 -20325045 - MER20 DNA MER1_type -3 216 1 230 279 37 93 chr21 14582525 14582616 -20324954 - MLT1J1 LTR MaLR -339 107 27 270 95 0 0 chr21 14583214 14583256 -20324314 + (GA)n Simple_repeat Simple_repeat 2 43 0 26 0 0 0 chr21 14583797 14583823 -20323747 + AT_rich Low_complexity Low_complexity 1 26 0 432 93 58 70 chr21 14584014 14584100 -20323470 + THE1C LTR MaLR 208 292 -83 765 216 48 53 chr21 14584100 14584308 -20323262 - MLT1A2 LTR MaLR -78 296 90 804 225 43 21 chr21 14584846 14585033 -20322537 + MER20 DNA MER1_type 29 219 0 194 182 0 0 chr21 14585256 14585289 -20322281 - L3 LINE CR1 -17 1560 1528 2994 174 42 21 chr21 14585370 14586325 -20321245 + L1MC3 LINE L1 6654 7671 -114 1908 155 19 48 chr21 14586325 14586700 -20320870 - THE1B LTR MaLR 0 364 1 2994 174 42 21 chr21 14586700 14586791 -20320779 + L1MC3 LINE L1 7671 7759 -26 193 293 76 76 chr21 14586953 14587110 -20320460 - MIR3 SINE MIR -48 160 4 261 0 0 0 chr21 14587380 14587409 -20320161 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 406 322 79 20 chr21 14588308 14588510 -20319060 + L2 LINE L2 3100 3313 0 1661 184 88 59 chr21 14588921 14589362 -20318208 + MLT1C LTR MaLR 1 454 -13 5837 24 0 0 chr21 14590021 14590746 -20316824 - L1P LINE L1 -728 5427 4703 3139 29 0 18 chr21 14590746 14591128 -20316442 + L1PA3 LINE L1 5777 6154 -1 30 0 0 0 chr21 14591128 14591158 -20316412 + AT_rich Low_complexity Low_complexity 1 30 0 5460 90 0 1 chr21 14591406 14592158 -20315412 + L1PA13 LINE L1 5413 6163 0 485 301 16 44 chr21 14593169 14593352 -20314218 - MER5B DNA MER1_type 0 178 1 197 347 61 28 chr21 14593352 14593561 -20314009 - L2 LINE L2 -52 3261 3046 1973 112 42 7 chr21 14595224 14595510 -20312060 - AluSg SINE Alu -14 296 1 207 0 0 0 chr21 14595572 14595595 -20311975 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 985 162 70 0 chr21 14596000 14596185 -20311385 + MER46B DNA MER2_type 5 77 -159 887 122 0 7 chr21 14596192 14596339 -20311231 + Tigger4(Zombi) DNA MER2_type 133 2648 -83 382 103 0 44 chr21 14596663 14596731 -20310839 - Alu SINE Alu -3 299 235 1596 186 23 10 chr21 14596710 14597017 -20310553 - MER7A DNA MER2_type -37 309 1 582 102 0 11 chr21 14597017 14597103 -20310467 + Tigger4(Zombi) DNA MER2_type 2645 2729 -2 562 229 46 39 chr21 14597426 14597579 -20309991 + MIR SINE MIR 108 261 -1 1780 246 50 18 chr21 14597857 14598362 -20309208 - MLT1F LTR MaLR 0 542 22 2080 132 24 0 chr21 14598650 14598939 -20308631 + AluSx SINE Alu 1 296 -16 190 234 0 21 chr21 14599616 14599663 -20307907 - L2 LINE L2 0 3313 3268 681 303 121 28 chr21 14599973 14600336 -20307234 + MLT1J LTR MaLR 115 511 0 213 150 0 25 chr21 14600438 14600478 -20307092 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 2259 101 0 3 chr21 14600941 14601229 -20306341 - AluSg SINE Alu -23 287 1 1328 200 33 32 chr21 14601951 14602347 -20305223 + MLT2B2 LTR ERVL 1 397 0 30 0 0 0 chr21 14602783 14602813 -20304757 + AT_rich Low_complexity Low_complexity 1 30 0 2553 68 0 0 chr21 14603021 14603329 -20304241 - AluY SINE Alu -3 308 1 1679 152 97 27 chr21 14603506 14603835 -20303735 - THE1B LTR MaLR -12 352 1 22 0 0 0 chr21 14604505 14604527 -20303043 + AT_rich Low_complexity Low_complexity 1 22 0 7457 62 2 3 chr21 14604565 14605877 -20301693 - L1PA7 LINE L1 -1 6153 4840 299 352 32 0 chr21 14606179 14606304 -20301266 - L2 LINE L2 -5 3308 3180 183 80 0 0 chr21 14607389 14607414 -20300156 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 938 255 149 20 chr21 14607760 14607965 -20299605 - L2 LINE L2 -2513 801 624 2593 137 16 10 chr21 14607965 14608353 -20299217 - MLT1B LTR MaLR 0 390 1 938 255 149 20 chr21 14608353 14608572 -20298998 - L2 LINE L2 -2690 624 297 206 277 107 57 chr21 14609222 14609381 -20298189 + L2 LINE L2 2952 3118 -195 299 279 0 0 chr21 14609476 14609544 -20298026 + L2 LINE L2 3246 3313 0 1531 201 3 32 chr21 14610104 14610282 -20297288 - Tigger1 DNA MER2_type 0 2418 2251 2135 126 3 26 chr21 14610282 14610592 -20296978 + AluSx SINE Alu 1 303 -9 1531 201 3 32 chr21 14610592 14610722 -20296848 - Tigger1 DNA MER2_type -167 2251 2119 4598 146 30 5 chr21 14610701 14611436 -20296134 - Tigger1 DNA MER2_type -1665 753 1 21 0 0 0 chr21 14612610 14612631 -20294939 + AT_rich Low_complexity Low_complexity 1 21 0 2733 111 16 3 chr21 14613602 14613972 -20293598 + THE1C LTR MaLR 1 375 0 10478 116 36 42 chr21 14613972 14615560 -20292010 + THE1C-int LTR MaLR 1 1580 0 2718 124 14 0 chr21 14615560 14615930 -20291640 + THE1C LTR MaLR 1 375 0 22 0 0 0 chr21 14616038 14616060 -20291510 + AT_rich Low_complexity Low_complexity 1 22 0 308 210 77 164 chr21 14616298 14616493 -20291077 + MER5B DNA MER1_type 1 178 0 1615 21 73 5 chr21 14616547 14616775 -20290795 + L1PA3 LINE L1 5951 6155 0 1395 238 11 0 chr21 14617375 14617657 -20289913 - MER90 LTR ERV1 0 614 330 1727 180 14 10 chr21 14617930 14618225 -20289345 - AluJb SINE Alu -16 296 1 1378 263 70 10 chr21 14618270 14618750 -20288820 - LTR27 LTR ERV1 -141 495 17 2110 138 3 0 chr21 14619109 14619407 -20288163 - AluSq SINE Alu -14 299 1 2399 92 0 0 chr21 14619694 14619997 -20287573 - AluY SINE Alu -8 303 1 199 292 15 62 chr21 14620259 14620324 -20287246 - MIR SINE MIR -116 146 85 2326 124 26 34 chr21 14623863 14624241 -20283329 - THE1C LTR MaLR 0 375 1 684 135 0 0 chr21 14627167 14627278 -20280292 + (TA)n Simple_repeat Simple_repeat 2 112 0 2169 129 0 3 chr21 14627281 14627591 -20279979 - AluSc SINE Alu 0 309 1 1961 150 69 30 chr21 14628409 14628770 -20278800 - THE1C LTR MaLR 0 375 1 640 321 60 39 chr21 14629039 14629372 -20278198 - LTR33 LTR ERVL -177 344 5 2563 150 2 8 chr21 14629953 14630352 -20277218 - MSTA LTR MaLR -31 397 1 776 271 94 51 chr21 14630468 14630818 -20276752 - LTR16A1 LTR ERVL -90 367 3 2398 138 120 5 chr21 14631177 14631561 -20276009 + MSTA LTR MaLR 1 428 0 6677 101 0 8 chr21 14632156 14633171 -20274399 - L1PA11 LINE L1 -3 6171 5151 867 201 28 0 chr21 14635086 14635265 -20272305 - MER5A DNA MER1_type -5 184 1 329 269 13 47 chr21 14635622 14635771 -20271799 + MER90 LTR ERV1 257 400 -175 256 230 122 0 chr21 14636240 14636314 -20271256 - MIR SINE MIR -70 192 110 186 259 56 112 chr21 14636281 14636424 -20271146 - MIR3 SINE MIR -65 143 9 207 296 80 34 chr21 14636540 14636628 -20270942 + L2 LINE L2 3180 3271 -1 381 107 0 131 chr21 14638453 14638537 -20269033 - L1PA10 LINE L1 0 6168 6096 1909 27 0 0 chr21 14638537 14638756 -20268814 + L1PA5 LINE L1 5688 5906 -248 2056 140 0 0 chr21 14639164 14639464 -20268106 + AluSq SINE Alu 1 300 -13 1084 167 0 0 chr21 14639464 14639632 -20267938 + AluSg/x SINE Alu 132 299 -11 287 333 19 0 chr21 14640285 14640393 -20267177 + MIR3 SINE MIR 84 193 -15 294 29 0 0 chr21 14640910 14640945 -20266625 + (CA)n Simple_repeat Simple_repeat 2 36 0 782 178 0 37 chr21 14641529 14641664 -20265906 - FLAM_C SINE Alu -12 131 2 593 311 84 26 chr21 14642419 14642692 -20264878 + L2 LINE L2 2011 2299 -1015 747 269 20 59 chr21 14642716 14642846 -20264724 + MIR SINE MIR 20 137 -125 2400 91 0 0 chr21 14642846 14643153 -20264417 + AluY SINE Alu 1 307 -4 747 269 20 59 chr21 14643153 14643275 -20264295 + MIR SINE MIR 137 262 0 312 255 10 20 chr21 14643372 14643470 -20264100 + L2 LINE L2 1314 1410 -1904 591 227 14 28 chr21 14643578 14643719 -20263851 + FLAM_A SINE Alu 4 142 0 447 282 0 34 chr21 14643921 14644024 -20263546 + L2 LINE L2 3181 3281 -32 369 0 0 0 chr21 14644024 14644065 -20263505 + (CA)n Simple_repeat Simple_repeat 2 42 0 447 282 0 34 chr21 14644065 14644078 -20263492 + L2 LINE L2 3281 3293 -20 263 313 74 18 chr21 14644704 14644867 -20262703 + MIR SINE MIR 66 237 -25 2805 103 16 0 chr21 14644961 14645330 -20262240 + THE1C LTR MaLR 1 375 0 232 365 94 0 chr21 14645523 14645619 -20261951 + L2 LINE L2 2925 3029 -243 291 296 43 17 chr21 14646131 14646246 -20261324 - MIR SINE MIR -39 223 106 324 357 67 30 chr21 14646770 14647039 -20260531 - L2 LINE L2 -1158 2156 1878 29 0 0 0 chr21 14649203 14649232 -20258338 + AT_rich Low_complexity Low_complexity 1 29 0 521 160 85 0 chr21 14649238 14649344 -20258226 + L1M1 LINE L1 10 124 -7441 983 214 78 61 chr21 14649427 14649722 -20257848 - AluJb SINE Alu -2 300 1 180 0 0 0 chr21 14649822 14649842 -20257728 + (TG)n Simple_repeat Simple_repeat 1 20 0 4621 169 21 26 chr21 14649964 14650293 -20257277 + L1MB2 LINE L1 4904 5233 -938 2807 86 11 3 chr21 14650293 14650665 -20256905 - THE1C LTR MaLR 0 375 1 9912 125 46 3 chr21 14650665 14652180 -20255390 - THE1C-int LTR MaLR 0 1580 1 2604 118 3 0 chr21 14652180 14652554 -20255016 - THE1C LTR MaLR 0 375 1 4621 169 21 26 chr21 14652554 14653491 -20254079 + L1MB2 LINE L1 5230 6171 0 213 116 23 47 chr21 14655123 14655166 -20252404 + T-rich Low_complexity Low_complexity 3 44 0 2030 262 56 42 chr21 14655188 14655514 -20252056 - L2 LINE L2 -68 3245 2925 991 288 63 30 chr21 14655514 14656018 -20251552 - LTR33 LTR ERVL 0 521 1 2030 262 56 42 chr21 14656018 14656669 -20250901 - L2 LINE L2 -388 2925 2257 1128 162 81 0 chr21 14656669 14656879 -20250691 - MER54A LTR ERVL 0 901 675 3713 171 16 24 chr21 14656995 14657545 -20250025 - MER54A LTR ERVL -226 675 122 1943 136 20 3 chr21 14657545 14657840 -20249730 + AluSq SINE Alu 4 303 -10 234 0 0 0 chr21 14657843 14657869 -20249701 + (CAA)n Simple_repeat Simple_repeat 2 27 0 3713 171 16 24 chr21 14657869 14657962 -20249608 - MER54A LTR ERVL -781 120 31 405 0 0 0 chr21 14657962 14658007 -20249563 + (GA)n Simple_repeat Simple_repeat 2 46 0 3713 171 16 24 chr21 14658007 14658038 -20249532 - MER54A LTR ERVL -870 31 1 183 269 0 30 chr21 14658049 14658116 -20249454 - L2 LINE L2 -1065 2249 2185 2478 245 43 36 chr21 14658146 14658886 -20248684 - L2 LINE L2 -1065 2249 1505 863 168 27 97 chr21 14658935 14658983 -20248587 - MER5A DNA MER1_type -14 175 125 1844 177 0 0 chr21 14658983 14659266 -20248304 + AluJb SINE Alu 5 287 -25 863 168 27 97 chr21 14659266 14659402 -20248168 - MER5A DNA MER1_type -64 125 4 1272 289 81 35 chr21 14659412 14659982 -20247588 - L2 LINE L2 -1807 1507 912 1224 306 63 8 chr21 14660242 14660735 -20246835 - L2 LINE L2 -2778 536 17 24 32 0 0 chr21 14661185 14661216 -20246354 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr21 14661449 14661477 -20246093 + AT_rich Low_complexity Low_complexity 1 28 0 1598 300 80 34 chr21 14661581 14662431 -20245139 + L2 LINE L2 1752 2640 -674 1000 311 71 7 chr21 14662573 14662997 -20244573 + L2 LINE L2 2824 3274 -39 249 382 20 10 chr21 14663872 14663974 -20243596 + MIR SINE MIR 20 122 -86 357 169 0 0 chr21 14664465 14664536 -20243034 - L1ME2 LINE L1 -9 6155 6085 1774 207 94 16 chr21 14664546 14664972 -20242598 + MLT1C LTR MaLR 1 459 -8 1125 180 71 19 chr21 14664980 14665247 -20242323 - L1ME2 LINE L1 -87 6077 5797 2462 48 0 7 chr21 14665723 14666018 -20241552 - AluY SINE Alu -18 293 1 197 351 0 0 chr21 14666301 14666375 -20241195 + L2 LINE L2 3198 3271 -1 2207 109 20 0 chr21 14666534 14666827 -20240743 - AluSx SINE Alu -13 299 1 2143 115 6 10 chr21 14667713 14668025 -20239545 - AluSx SINE Alu -1 311 1 234 62 0 0 chr21 14668430 14668462 -20239108 + (TG)n Simple_repeat Simple_repeat 2 33 0 4852 60 16 0 chr21 14671119 14671748 -20235822 - L1PA6 LINE L1 0 6154 5516 3872 119 14 11 chr21 14671888 14672008 -20235562 - MER61E LTR ERV1 -4 565 447 1978 110 3 63 chr21 14672008 14672325 -20235245 - AluSc SINE Alu -11 298 1 3872 119 14 11 chr21 14672325 14672767 -20234803 - MER61E LTR ERV1 -122 447 1 195 244 64 77 chr21 14674846 14674924 -20232646 + MIR SINE MIR 107 183 -79 1616 231 86 9 chr21 14675940 14676395 -20231175 + MLT1E2 LTR MaLR 137 626 0 882 275 62 8 chr21 14677657 14677952 -20229618 + MLT1E2 LTR MaLR 216 491 -102 533 144 0 10 chr21 14678412 14678516 -20229054 - L1MB3 LINE L1 0 6183 6081 654 251 101 5 chr21 14679838 14680037 -20227533 - MER20 DNA MER1_type 0 219 2 24 0 0 0 chr21 14680351 14680375 -20227195 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr21 14681040 14681065 -20226505 + AT_rich Low_complexity Low_complexity 1 25 0 1991 173 20 23 chr21 14682547 14682593 -20224977 - MLT2C1 LTR ERVL 0 397 352 405 39 0 0 chr21 14682593 14682644 -20224926 + (TG)n Simple_repeat Simple_repeat 2 52 0 1991 173 20 23 chr21 14682644 14682995 -20224575 - MLT2C1 LTR ERVL -45 352 1 312 27 0 0 chr21 14683167 14683204 -20224366 + (CA)n Simple_repeat Simple_repeat 1 37 0 439 108 0 0 chr21 14684374 14684439 -20223131 + MER70B LTR ERVL 1 65 -513 2127 198 5 17 chr21 14684490 14684909 -20222661 + MER70A LTR ERVL 59 472 0 202 116 47 0 chr21 14685949 14685992 -20221578 + (TA)n Simple_repeat Simple_repeat 2 46 0 693 142 8 15 chr21 14685994 14686053 -20221517 + Tigger5 DNA MER2_type 2190 2248 -75 593 138 69 39 chr21 14686053 14686183 -20221387 - L1PA11 LINE L1 0 6174 6041 693 142 8 15 chr21 14686183 14686257 -20221313 + Tigger5 DNA MER2_type 2248 2322 -1 1400 270 60 19 chr21 14686286 14686858 -20220712 + L2 LINE L2 2719 3312 -1 224 344 10 10 chr21 14687286 14687382 -20220188 + MIR3 SINE MIR 77 172 -36 418 291 101 83 chr21 14688830 14689127 -20218443 - L2 LINE L2 -8 3305 2998 1612 196 0 10 chr21 14689127 14689423 -20218147 + AluJo SINE Alu 12 304 -8 418 291 101 83 chr21 14689423 14689510 -20218060 - L2 LINE L2 -315 2998 2914 489 257 74 45 chr21 14689546 14689748 -20217822 + MIR SINE MIR 4 211 -51 221 296 45 91 chr21 14689773 14689905 -20217665 + MIR3 SINE MIR 14 139 -69 5453 53 76 0 chr21 14690019 14690769 -20216801 - L1PA8 LINE L1 -7 6165 5359 1558 185 40 40 chr21 14690771 14691068 -20216502 - AluJo SINE Alu -15 297 1 316 116 0 0 chr21 14691118 14691161 -20216409 - MIR SINE MIR -125 83 41 279 200 29 14 chr21 14691267 14691337 -20216233 - LTR33 LTR ERVL 0 521 451 462 264 40 29 chr21 14691528 14691702 -20215868 - LTR33 LTR ERVL -326 195 20 21 89 0 0 chr21 14691917 14691973 -20215597 + AT_rich Low_complexity Low_complexity 1 56 0 532 152 58 43 chr21 14692349 14692487 -20215083 + MIR SINE MIR 121 260 -2 283 311 41 87 chr21 14693218 14693414 -20214156 - L2 LINE L2 -33 3239 3053 1850 177 3 10 chr21 14693892 14694203 -20213367 + AluJo SINE Alu 4 312 0 2115 114 14 3 chr21 14694262 14694559 -20213011 + AluSq SINE Alu 1 300 -13 1512 262 88 39 chr21 14695194 14695759 -20211811 + MLT1E LTR MaLR 1 593 0 181 343 102 7 chr21 14695870 14696007 -20211563 - MIR SINE MIR -54 208 59 680 244 0 24 chr21 14697011 14697175 -20210395 + MER3 DNA MER1_type 50 209 0 634 291 94 6 chr21 14697224 14697445 -20210125 - MIR SINE MIR -8 254 17 256 157 12 145 chr21 14699280 14699363 -20208207 + L2 LINE L2 3241 3312 -1 605 337 78 15 chr21 14699373 14699643 -20207927 - L3 LINE CR1 -250 1327 1041 23 0 0 0 chr21 14700769 14700792 -20206778 + AT_rich Low_complexity Low_complexity 1 23 0 2161 107 27 0 chr21 14700792 14701120 -20206450 - L1MA5A LINE L1 -2 6295 5959 520 76 13 25 chr21 14701478 14701557 -20206013 - MADE1 DNA Mariner 0 80 3 1923 137 159 8 chr21 14701656 14702028 -20205542 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr21 14703575 14703597 -20203973 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr21 14703627 14703658 -20203912 + AT_rich Low_complexity Low_complexity 1 31 0 379 320 14 34 chr21 14704949 14705096 -20202474 - L2 LINE L2 -1878 1436 1293 2283 95 0 25 chr21 14705335 14705652 -20201918 - AluSg SINE Alu -1 309 1 180 0 0 0 chr21 14705708 14705728 -20201842 + (T)n Simple_repeat Simple_repeat 1 20 0 1702 296 75 73 chr21 14705816 14707000 -20200570 + L2 LINE L2 553 1817 -1497 548 274 18 12 chr21 14707458 14707622 -20199948 - L1MC4 LINE L1 -484 7558 7394 591 241 65 22 chr21 14707629 14707861 -20199709 - L1MC4 LINE L1 -708 7334 7093 560 0 37 12 chr21 14707876 14707957 -20199613 + (TCTA)n Simple_repeat Simple_repeat 1 83 0 28 71 0 0 chr21 14708925 14708981 -20198589 + AT_rich Low_complexity Low_complexity 1 56 0 23 0 0 0 chr21 14709122 14709145 -20198425 + AT_rich Low_complexity Low_complexity 1 23 0 2141 244 96 87 chr21 14709328 14710547 -20197023 - L2 LINE L2 -2 3311 2067 900 144 0 0 chr21 14710979 14711111 -20196459 - AluSq/x SINE Alu -181 132 1 378 265 108 11 chr21 14712475 14712660 -20194910 + L1ME LINE L1 5563 5765 -356 1653 78 0 0 chr21 14712817 14713035 -20194535 - L1PA14 LINE L1 -295 5866 5649 431 308 53 6 chr21 14713268 14713437 -20194133 - HAL1 LINE L1 -87 2420 2244 290 225 112 0 chr21 14713455 14713535 -20194035 - HAL1 LINE L1 -337 2170 2082 1514 282 79 39 chr21 14713814 14714698 -20192872 - HAL1 LINE L1 -745 1762 843 430 158 40 0 chr21 14715097 14715173 -20192397 + MIR SINE MIR 68 146 -116 653 303 84 10 chr21 14715310 14715620 -20191950 - MER46C DNA MER2_type -5 333 1 3188 208 67 70 chr21 14716488 14717908 -20189662 - L1MD1 LINE L1 -8 6234 4817 23 0 0 0 chr21 14718156 14718179 -20189391 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr21 14718572 14718603 -20188967 + AT_rich Low_complexity Low_complexity 1 31 0 626 298 57 84 chr21 14719442 14719540 -20188030 + MLT1J LTR MaLR 3 102 -409 405 0 0 0 chr21 14719540 14719585 -20187985 + (TTCC)n Simple_repeat Simple_repeat 1 45 0 1587 158 53 0 chr21 14719585 14719851 -20187719 - AluJo SINE Alu -31 281 2 626 298 57 84 chr21 14719851 14719885 -20187685 + MLT1J LTR MaLR 101 134 -377 189 0 0 0 chr21 14719885 14719906 -20187664 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 626 298 57 84 chr21 14719906 14720294 -20187276 + MLT1J LTR MaLR 134 511 0 218 200 46 0 chr21 14720842 14720907 -20186663 + (TA)n Simple_repeat Simple_repeat 1 68 0 1773 146 14 10 chr21 14721321 14721616 -20185954 + AluSx SINE Alu 1 296 -16 227 350 77 0 chr21 14721619 14721736 -20185834 - L2 LINE L2 -17 3296 3171 288 309 12 0 chr21 14722117 14722198 -20185372 - L2 LINE L2 -2 3311 3230 362 172 0 0 chr21 14725982 14726046 -20181524 + L1MA7 LINE L1 6218 6281 -10 268 256 70 0 chr21 14726666 14726752 -20180818 + MLT1J1 LTR MaLR 66 157 -289 451 272 81 64 chr21 14727338 14727511 -20180059 + MER5B DNA MER1_type 3 178 0 2716 102 5 0 chr21 14729934 14730307 -20177263 - THE1C LTR MaLR 0 375 1 848 221 99 70 chr21 14730457 14730842 -20176728 + MLT1C LTR MaLR 72 467 0 1684 190 46 30 chr21 14731236 14731604 -20175966 - MLT1A2 LTR MaLR 0 374 1 2272 101 3 0 chr21 14732357 14732654 -20174916 + AluSc SINE Alu 1 298 -11 203 274 65 0 chr21 14732944 14733006 -20174564 + MIR SINE MIR 102 167 -95 21 0 0 0 chr21 14734743 14734764 -20172806 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 14735490 14735512 -20172058 + AT_rich Low_complexity Low_complexity 1 22 0 225 0 0 0 chr21 14735524 14735549 -20172021 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1610 95 0 5 chr21 14735575 14735786 -20171784 - AluSg/x SINE Alu -17 293 84 34 0 0 0 chr21 14735786 14735820 -20171750 + AT_rich Low_complexity Low_complexity 1 34 0 3362 69 7 0 chr21 14735820 14736269 -20171301 - L1MA1 LINE L1 -6 6296 5845 364 333 94 11 chr21 14736736 14736916 -20170654 + MIR SINE MIR 66 260 -2 266 219 70 96 chr21 14737234 14737421 -20170149 - L1MB8 LINE L1 0 6178 5997 198 265 88 15 chr21 14739190 14739258 -20168312 - L2 LINE L2 0 3313 3241 827 271 68 29 chr21 14740326 14740726 -20166844 + L2 LINE L2 2695 3132 -181 556 245 78 70 chr21 14740836 14741200 -20166370 - MLT1J2 LTR MaLR -7 428 41 276 30 0 0 chr21 14743280 14743313 -20164257 + (CA)n Simple_repeat Simple_repeat 1 33 0 2176 105 7 13 chr21 14743495 14743800 -20163770 - AluSx SINE Alu -9 303 1 1278 226 74 22 chr21 14743814 14744137 -20163433 + MER58B DNA MER1_type 1 340 -1 2434 24 3 3 chr21 14745081 14745376 -20162194 + L1PA4 LINE L1 5861 6155 0 2290 152 60 12 chr21 14745514 14745915 -20161655 + MSTB1 LTR MaLR 1 420 -12 455 305 53 0 chr21 14745995 14746146 -20161424 - MIR SINE MIR -6 256 98 1569 174 0 11 chr21 14746646 14746921 -20160649 - AluJb SINE Alu 0 312 41 2894 3 0 0 chr21 14748133 14748444 -20159126 + AluY SINE Alu 1 311 0 2105 134 0 0 chr21 14748863 14749155 -20158415 - AluSx SINE Alu -20 292 1 1628 211 52 21 chr21 14749559 14749943 -20157627 + MSTD LTR MaLR 1 396 0 992 287 84 24 chr21 14750409 14750991 -20156579 - L2 LINE L2 0 3272 2665 2641 86 19 0 chr21 14751016 14751376 -20156194 + L1PA10 LINE L1 5472 5838 -330 5742 58 7 11 chr21 14751372 14751413 -20156157 - L1PA8A LINE L1 0 6131 6091 252 0 0 0 chr21 14751413 14751441 -20156129 + (TA)n Simple_repeat Simple_repeat 2 29 0 5742 58 7 11 chr21 14751441 14752144 -20155426 - L1PA8A LINE L1 -40 6091 5390 2437 92 14 32 chr21 14752144 14752513 -20155057 + L1PA10 LINE L1 5803 6165 -3 799 333 76 39 chr21 14754475 14755095 -20152475 + L2 LINE L2 2451 3095 -218 577 212 22 15 chr21 14756159 14756296 -20151274 - LTR41 LTR ERVL -631 142 5 214 231 0 86 chr21 14756433 14756550 -20151020 + CT-rich Low_complexity Low_complexity 1 107 0 21 0 0 0 chr21 14756578 14756599 -20150971 + AT_rich Low_complexity Low_complexity 1 21 0 1913 99 31 3 chr21 14757169 14757462 -20150108 + L1PA13 LINE L1 5844 6144 -19 2010 124 0 0 chr21 14757470 14757743 -20149827 + AluSx SINE Alu 6 278 -34 26 64 0 0 chr21 14757868 14757915 -20149655 + AT_rich Low_complexity Low_complexity 1 47 0 2306 169 26 9 chr21 14759561 14759980 -20147590 + MSTB LTR MaLR 1 426 0 479 232 85 40 chr21 14760367 14760544 -20147026 - MIR SINE MIR -55 207 23 31 44 0 0 chr21 14761535 14761580 -20145990 + AT_rich Low_complexity Low_complexity 1 45 0 3190 46 5 0 chr21 14761766 14762161 -20145409 - L1PA7 LINE L1 -2 6152 5756 3417 119 2 10 chr21 14762161 14762664 -20144906 + Tigger4(Zombi) DNA MER2_type 904 1402 -1329 1292 168 77 96 chr21 14762664 14763039 -20144531 + THE1C LTR MaLR 3 370 -5 9002 103 17 23 chr21 14763045 14764388 -20143182 + Tigger4(Zombi) DNA MER2_type 1397 2731 0 24 100 0 0 chr21 14764416 14764496 -20143074 + AT_rich Low_complexity Low_complexity 1 80 0 181 152 17 17 chr21 14764509 14764568 -20143002 + (TA)n Simple_repeat Simple_repeat 2 60 0 2596 170 18 16 chr21 14764572 14765019 -20142551 - MLT2B2 LTR ERVL -67 448 1 252 171 0 0 chr21 14765024 14765065 -20142505 + (TTG)n Simple_repeat Simple_repeat 3 43 0 188 230 53 97 chr21 14765408 14765521 -20142049 + L2 LINE L2 3128 3235 -78 188 139 0 23 chr21 14766295 14766338 -20141232 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1116 171 5 0 chr21 14766371 14766564 -20141006 + L1PA16 LINE L1 5964 6157 -9 21 0 0 0 chr21 14766564 14766585 -20140985 + AT_rich Low_complexity Low_complexity 1 21 0 1414 149 85 85 chr21 14767213 14767588 -20139982 - THE1C LTR MaLR 0 375 1 326 128 0 0 chr21 14768175 14768222 -20139348 - L2 LINE L2 -1 3271 3225 291 298 107 36 chr21 14768854 14769022 -20138548 - MLT1I LTR MaLR -208 201 22 1346 212 146 9 chr21 14769023 14769344 -20138226 + MLT1A1 LTR MaLR 1 365 0 578 237 79 93 chr21 14769585 14770015 -20137555 - HAL1 LINE L1 -1336 1171 748 1359 228 29 3 chr21 14770152 14770498 -20137072 - Charlie4a DNA MER1_type -118 390 36 453 343 60 33 chr21 14770773 14771170 -20136400 - HAL1 LINE L1 -2097 410 3 2449 272 72 28 chr21 14771453 14772965 -20134605 + L1ME LINE L1 476 2027 -4513 337 276 32 23 chr21 14773127 14773344 -20134226 + L1ME LINE L1 2315 2533 -4007 289 237 43 11 chr21 14773358 14773451 -20134119 + L1ME LINE L1 2608 2703 -4018 195 42 0 0 chr21 14773550 14773574 -20133996 + (GA)n Simple_repeat Simple_repeat 1 24 0 420 20 0 0 chr21 14773577 14773626 -20133944 + (TG)n Simple_repeat Simple_repeat 2 50 0 836 256 87 25 chr21 14773628 14774216 -20133354 + L1ME LINE L1 4195 4827 -1713 1862 93 38 28 chr21 14774354 14774645 -20132925 + L1PA10 LINE L1 5870 6163 -5 281 213 16 16 chr21 14774859 14774920 -20132650 - MLT1J LTR MaLR -316 195 135 2213 87 3 3 chr21 14774923 14775211 -20132359 + AluSx SINE Alu 1 288 -24 33 0 0 0 chr21 14775211 14775244 -20132326 + AT_rich Low_complexity Low_complexity 1 33 0 363 291 75 8 chr21 14775244 14775378 -20132192 - MLT1J LTR MaLR -368 143 1 26 30 0 0 chr21 14775980 14776013 -20131557 + AT_rich Low_complexity Low_complexity 1 33 0 643 195 71 47 chr21 14776104 14776273 -20131297 + FRAM SINE Alu 1 173 -3 29 47 0 0 chr21 14776436 14776479 -20131091 + AT_rich Low_complexity Low_complexity 1 43 0 335 276 33 111 chr21 14776538 14776719 -20130851 + L2 LINE L2 2922 3088 -225 2224 27 27 54 chr21 14776864 14777160 -20130410 - AluY SINE Alu -1 310 23 916 277 67 38 chr21 14777578 14778111 -20129459 - MER69 DNA AcHobo -1958 568 1 1114 229 62 7 chr21 14778425 14778700 -20128870 + LTR48B LTR ERV1 1 290 -354 834 237 87 21 chr21 14778731 14779018 -20128552 + LTR48 LTR ERV1 480 785 -2 398 263 11 0 chr21 14779233 14779328 -20128242 - MIR SINE MIR -33 229 134 1732 180 3 7 chr21 14779665 14779948 -20127622 - AluJo SINE Alu -30 282 1 342 344 6 49 chr21 14779967 14780150 -20127420 + MER5A DNA MER1_type 14 188 -1 14569 134 33 13 chr21 14781228 14783593 -20123977 + Tigger1 DNA MER2_type 1 2413 -5 2369 231 80 44 chr21 14783607 14784704 -20122866 - L1MDa LINE L1 -3953 2768 1581 33 0 0 0 chr21 14786048 14786081 -20121489 + AT_rich Low_complexity Low_complexity 1 33 0 554 240 0 0 chr21 14786093 14786197 -20121373 - FLAM_A SINE Alu -38 104 1 235 275 58 0 chr21 14786305 14786374 -20121196 - MIR SINE MIR -110 152 80 2248 128 128 8 chr21 14787753 14788135 -20119435 - MSTA LTR MaLR 0 428 1 245 319 135 14 chr21 14788323 14788464 -20119106 + MIR SINE MIR 38 195 -67 213 320 67 70 chr21 14788915 14789303 -20118267 + L2 LINE L2 2120 2506 -808 278 350 10 0 chr21 14789373 14789473 -20118097 + MER5A DNA MER1_type 6 106 -83 685 183 0 0 chr21 14789662 14789777 -20117793 - FLAM_A SINE Alu -21 121 7 424 273 0 0 chr21 14789827 14789926 -20117644 - MER81 DNA DNA 0 114 16 300 270 108 62 chr21 14790154 14790482 -20117088 - L1M1 LINE L1 -532 5772 5434 398 149 0 0 chr21 14790723 14790790 -20116780 - L1MB7 LINE L1 -19 6165 6099 1119 278 92 49 chr21 14790891 14791965 -20115605 - L1M4 LINE L1 -1120 5026 3912 22 70 0 0 chr21 14792585 14792628 -20114942 + AT_rich Low_complexity Low_complexity 1 43 0 245 360 60 60 chr21 14793791 14794027 -20113543 + L2 LINE L2 2831 3069 -203 678 78 0 0 chr21 14794027 14794129 -20113441 + (CA)n Simple_repeat Simple_repeat 2 103 0 245 360 60 60 chr21 14794129 14794311 -20113259 + L2 LINE L2 3068 3249 -23 1921 136 18 0 chr21 14794594 14794901 -20112669 + AluSx SINE Alu 1 312 0 35 0 0 0 chr21 14796148 14796183 -20111387 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 14797992 14798013 -20109557 + AT_rich Low_complexity Low_complexity 1 21 0 2212 120 3 0 chr21 14798027 14798328 -20109242 + AluSx SINE Alu 1 302 -10 31 0 0 0 chr21 14798967 14798998 -20108572 + AT_rich Low_complexity Low_complexity 1 31 0 5288 124 35 16 chr21 14799613 14800904 -20106666 + L1PA16 LINE L1 4842 6157 -9 213 39 0 0 chr21 14802814 14802840 -20104730 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 252 243 83 55 chr21 14805168 14805349 -20102221 + L1M4 LINE L1 4474 4659 -1487 21 36 0 0 chr21 14805955 14805983 -20101587 + AT_rich Low_complexity Low_complexity 1 28 0 1650 134 84 28 chr21 14807293 14807577 -20099993 + AluSx SINE Alu 1 300 -12 21 71 0 0 chr21 14807866 14807908 -20099662 + AT_rich Low_complexity Low_complexity 1 42 0 555 254 30 30 chr21 14808927 14809096 -20098474 - MIR SINE MIR -16 246 78 4742 123 27 39 chr21 14809343 14809902 -20097668 - L1PA16 LINE L1 -9 6157 5610 2259 77 49 0 chr21 14809902 14810188 -20097382 - AluSq SINE Alu -13 300 1 4742 123 27 39 chr21 14810188 14810470 -20097100 - L1PA16 LINE L1 -556 5610 5326 8778 204 24 11 chr21 14810456 14811893 -20095677 - L1 LINE L1 -1194 4952 3482 2250 137 22 22 chr21 14811893 14812257 -20095313 + THE1B LTR MaLR 1 364 0 8778 204 24 11 chr21 14812257 14812811 -20094759 - L1 LINE L1 -2664 3482 2936 701 212 138 0 chr21 14813050 14813210 -20094360 - MER5A DNA MER1_type -7 182 1 375 23 0 0 chr21 14813292 14813336 -20094234 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 22 0 0 0 chr21 14813740 14813762 -20093808 + AT_rich Low_complexity Low_complexity 1 22 0 536 237 68 34 chr21 14813969 14814176 -20093394 - L1MC4 LINE L1 0 8042 7829 1517 262 66 74 chr21 14814206 14814858 -20092712 - L1MC4 LINE L1 -717 7325 6634 180 0 0 0 chr21 14814858 14814878 -20092692 + (CA)n Simple_repeat Simple_repeat 2 21 0 1517 262 66 74 chr21 14814878 14815001 -20092569 - L1MC4 LINE L1 -1408 6634 6511 343 239 78 90 chr21 14815310 14815477 -20092093 - L1MC4a LINE L1 -1588 6220 6056 1659 218 144 43 chr21 14815682 14816314 -20091256 - L1MC4a LINE L1 -1859 5949 5254 454 335 40 28 chr21 14817258 14817506 -20090064 + L2 LINE L2 2596 2846 -468 247 184 122 0 chr21 14817688 14817737 -20089833 + MER5A DNA MER1_type 134 188 -1 536 197 82 0 chr21 14817750 14817897 -20089673 - Charlie5 DNA MER1_type -31 2581 2423 857 169 15 108 chr21 14817936 14818034 -20089536 - Charlie5 DNA MER1_type -145 2479 2374 2383 90 0 0 chr21 14818034 14818335 -20089235 - AluY SINE Alu -10 301 1 857 169 15 108 chr21 14818335 14818496 -20089074 - Charlie5 DNA MER1_type -250 2374 2244 520 147 0 125 chr21 14818507 14818643 -20088927 - Charlie5 DNA MER1_type -2491 121 3 1649 120 62 4 chr21 14820086 14820328 -20087242 - AluSq SINE Alu -57 256 1 254 304 57 46 chr21 14820357 14820551 -20087019 + L2 LINE L2 3114 3309 -4 912 208 89 5 chr21 14820925 14821127 -20086443 + MER20 DNA MER1_type 1 219 0 691 246 111 80 chr21 14821290 14821446 -20086124 + MSTC LTR MaLR 1 151 -277 1657 172 3 58 chr21 14821446 14821759 -20085811 + AluJo SINE Alu 1 296 -16 691 246 111 80 chr21 14821759 14822017 -20085553 + MSTC LTR MaLR 151 428 0 230 376 96 6 chr21 14822524 14822681 -20084889 - L2 LINE L2 -429 2885 2715 1593 173 25 25 chr21 14822688 14823006 -20084564 + MSTA LTR MaLR 111 428 0 2002 130 0 7 chr21 14823706 14823999 -20083571 + AluSq SINE Alu 1 291 -22 1769 178 39 24 chr21 14826357 14826740 -20080830 - MLT1B LTR MaLR 0 390 2 34 0 0 0 chr21 14828114 14828148 -20079422 + AT_rich Low_complexity Low_complexity 1 34 0 300 27 0 0 chr21 14830653 14830690 -20076880 + (TG)n Simple_repeat Simple_repeat 1 37 0 279 0 0 0 chr21 14830957 14830988 -20076582 + (CCA)n Simple_repeat Simple_repeat 1 31 0 706 233 21 37 chr21 14831304 14831493 -20076077 - MER63A DNA MER1_type -24 186 1 2167 132 8 39 chr21 14831754 14832141 -20075429 + THE1C LTR MaLR 1 375 0 511 342 88 22 chr21 14832607 14832969 -20074601 - L1MC/D LINE L1 -2000 5808 5423 669 217 23 29 chr21 14833014 14833358 -20074212 + L1ME2 LINE L1 5725 6158 -6 2337 100 0 6 chr21 14833522 14833833 -20073737 - AluSg1 SINE Alu 0 309 1 8316 177 53 46 chr21 14833865 14837799 -20069771 - L1MA3 LINE L1 0 6305 2361 816 169 0 45 chr21 14838737 14838891 -20068679 + MER46B DNA MER2_type 1 22 -214 22 0 0 0 chr21 14839495 14839517 -20068053 + AT_rich Low_complexity Low_complexity 1 22 0 557 244 39 57 chr21 14841465 14841694 -20065876 - MER112 DNA MER1_type 0 260 36 558 305 45 28 chr21 14841852 14842208 -20065362 + ERVL LTR ERVL 3377 3739 -1915 1960 209 70 21 chr21 14842878 14843346 -20064224 - MLT1D LTR MaLR 0 505 15 1508 235 66 9 chr21 14844871 14845326 -20062244 - Charlie4a DNA MER1_type 0 508 28 1240 51 6 0 chr21 14845437 14845594 -20061976 + L1PA5 LINE L1 5988 6145 -9 1809 160 28 0 chr21 14846597 14846884 -20060686 + AluJb SINE Alu 1 295 -17 587 60 12 0 chr21 14846898 14846982 -20060588 + (GGAA)n Simple_repeat Simple_repeat 4 88 0 22 35 0 0 chr21 14847159 14847188 -20060382 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr21 14848222 14848253 -20059317 + AT_rich Low_complexity Low_complexity 1 31 0 2300 75 3 7 chr21 14849937 14850232 -20057338 + AluY SINE Alu 1 294 -17 714 136 0 0 chr21 14851458 14851576 -20055994 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 369 136 0 0 chr21 14851578 14851637 -20055933 - AluS SINE Alu -29 272 220 623 153 81 9 chr21 14851637 14851748 -20055822 - AluJb SINE Alu -124 188 70 240 143 0 0 chr21 14851750 14851785 -20055785 - Alu SINE Alu -141 162 128 294 143 0 0 chr21 14852209 14852258 -20055312 + (TG)n Simple_repeat Simple_repeat 1 49 0 25 31 0 0 chr21 14852626 14852658 -20054912 + AT_rich Low_complexity Low_complexity 1 32 0 613 312 65 63 chr21 14853270 14853777 -20053793 - L1MC/D LINE L1 -361 5801 5294 210 118 0 0 chr21 14854067 14854101 -20053469 + (TG)n Simple_repeat Simple_repeat 2 35 0 416 314 44 60 chr21 14854283 14854535 -20053035 - L1MC/D LINE L1 -1318 4828 4581 312 287 112 56 chr21 14854576 14854862 -20052708 - L1MC/D LINE L1 -1634 4512 4211 387 256 51 26 chr21 14855388 14855505 -20052065 + L1M4c LINE L1 675 794 -5975 922 221 48 11 chr21 14855493 14855869 -20051701 + L1M4c LINE L1 2354 2803 -4047 1274 259 34 8 chr21 14855925 14856277 -20051293 + L1M4c LINE L1 3134 3494 -3354 7798 187 21 28 chr21 14856282 14857905 -20049665 - MER52A LTR ERV1 -1 1754 1 543 239 48 24 chr21 14857914 14858123 -20049447 + L1M4c LINE L1 3504 3717 -3131 2448 77 3 0 chr21 14858254 14858564 -20049006 - AluY SINE Alu 0 311 1 291 327 66 9 chr21 14858646 14858912 -20048658 + L1MC/D LINE L1 5546 5824 -320 474 18 0 0 chr21 14860220 14860275 -20047295 + (CA)n Simple_repeat Simple_repeat 2 56 0 2917 162 50 78 chr21 14860473 14861239 -20046331 - L1MA9 LINE L1 0 6312 5569 1102 221 37 0 chr21 14861257 14861529 -20046041 - L1 LINE L1 -3583 3523 3242 667 248 91 49 chr21 14861530 14861908 -20045662 - MSTD LTR MaLR -7 389 1 222 37 0 0 chr21 14861978 14862005 -20045565 + (TG)n Simple_repeat Simple_repeat 2 28 0 46 33 0 0 chr21 14862005 14862065 -20045505 + AT_rich Low_complexity Low_complexity 1 60 0 2592 240 43 68 chr21 14862114 14863543 -20044027 - L1 LINE L1 -3960 3146 1682 2103 145 3 0 chr21 14863543 14863854 -20043716 - AluSx SINE Alu 0 312 1 2592 240 43 68 chr21 14863854 14865031 -20042539 - L1 LINE L1 -5424 1682 1 375 256 0 0 chr21 14865038 14865124 -20042446 - L1ME2 LINE L1 0 6164 6079 720 272 50 22 chr21 14865127 14865450 -20042120 - L1ME2 LINE L1 -106 6058 5727 518 190 0 17 chr21 14865654 14865770 -20041800 + L1MA10 LINE L1 6166 6279 -55 21 71 0 0 chr21 14868002 14868044 -20039526 + AT_rich Low_complexity Low_complexity 1 42 0 276 207 52 86 chr21 14868096 14868212 -20039358 - L1ME3A LINE L1 -123 6047 5936 743 294 45 12 chr21 14868308 14868641 -20038929 - L1ME3A LINE L1 -133 6020 5677 888 242 46 32 chr21 14868663 14868989 -20038581 - L1ME3A LINE L1 -456 5697 5349 6167 123 10 29 chr21 14869062 14869421 -20038149 - L1PB1 LINE L1 0 6151 5787 378 61 0 0 chr21 14869421 14869470 -20038100 + (TA)n Simple_repeat Simple_repeat 2 50 0 6167 123 10 29 chr21 14869470 14869580 -20037990 - L1PB1 LINE L1 -364 5787 5676 438 108 0 0 chr21 14869580 14869645 -20037925 + (TG)n Simple_repeat Simple_repeat 2 66 0 6167 123 10 29 chr21 14869645 14870572 -20036998 - L1PB1 LINE L1 -475 5676 4781 467 271 80 25 chr21 14870760 14870959 -20036611 - L1ME3A LINE L1 -1053 5076 4867 273 75 0 0 chr21 14870989 14871029 -20036541 + (TG)n Simple_repeat Simple_repeat 2 41 0 369 10 122 0 chr21 14871029 14871127 -20036443 + (TA)n Simple_repeat Simple_repeat 2 111 0 473 256 36 63 chr21 14871127 14871459 -20036111 - L1ME3A LINE L1 -1602 4527 4205 295 245 61 31 chr21 14871507 14871670 -20035900 - HAL1 LINE L1 -904 1603 1436 330 348 57 52 chr21 14871731 14871941 -20035629 - L1ME3A LINE L1 -4867 1252 1042 23 33 0 0 chr21 14872097 14872127 -20035443 + AT_rich Low_complexity Low_complexity 1 30 0 6476 169 31 13 chr21 14873435 14873998 -20033572 - L1P LINE L1 -1170 4976 4425 321 26 0 0 chr21 14873998 14874036 -20033534 + (TG)n Simple_repeat Simple_repeat 1 38 0 6476 169 31 13 chr21 14874036 14874725 -20032845 - L1P LINE L1 -1721 4425 3701 5710 137 7 1 chr21 14874778 14875732 -20031838 + L1PA13 LINE L1 5190 6149 -14 1975 156 0 0 chr21 14876670 14876965 -20030605 - AluSx SINE Alu -17 295 1 383 253 96 68 chr21 14877152 14877444 -20030126 - L1ME4a LINE L1 -65 6056 5757 2383 137 0 3 chr21 14877446 14877797 -20029773 - THE1B LTR MaLR 0 364 15 728 169 14 0 chr21 14877824 14877972 -20029598 + CT-rich Low_complexity Low_complexity 3 152 0 330 298 81 53 chr21 14878688 14879047 -20028523 + L1M4 LINE L1 3790 4158 -1988 2113 120 7 0 chr21 14879387 14879678 -20027892 - AluSq SINE Alu -19 294 2 955 272 30 9 chr21 14879759 14880093 -20027477 + L1M4 LINE L1 4632 4972 -1174 750 303 66 56 chr21 14880320 14880597 -20026973 + L1MEc LINE L1 123 396 -6000 2241 95 0 0 chr21 14880597 14880908 -20026662 + AluSx SINE Alu 1 311 0 750 303 66 56 chr21 14880908 14881384 -20026186 + L1MEc LINE L1 396 885 -5511 292 279 31 0 chr21 14881436 14881660 -20025910 + L1MEc LINE L1 877 1147 -5249 4964 21 3 0 chr21 14882397 14882972 -20024598 - L1PA2 LINE L1 -171 5984 5408 1405 12 0 0 chr21 14882972 14883130 -20024440 + L1PA2 LINE L1 5993 6153 -2 2779 140 9 31 chr21 14883160 14883652 -20023918 + MLT1C LTR MaLR 1 390 0 371 130 0 87 chr21 14885531 14885600 -20021970 + Tigger2 DNA MER2_type 1 63 -2655 6726 36 5 0 chr21 14885612 14886418 -20021152 - L1PA5 LINE L1 -7 6147 5338 642 36 0 0 chr21 14886418 14886501 -20021069 + L1P LINE L1 5279 5361 -793 15616 142 37 8 chr21 14886501 14889097 -20018473 + Tigger2 DNA MER2_type 47 2718 0 733 235 81 24 chr21 14889152 14889399 -20018171 + LTR33 LTR ERVL 261 521 0 279 0 0 0 chr21 14889780 14889811 -20017759 + (TG)n Simple_repeat Simple_repeat 2 32 0 1206 121 44 14 chr21 14890565 14890800 -20016770 + MER61D LTR ERV1 1 223 -211 1997 140 30 15 chr21 14890808 14891144 -20016426 - THE1A LTR MaLR -14 341 1 1289 130 21 0 chr21 14891145 14891337 -20016233 + MER61D LTR ERV1 306 501 0 2997 156 8 14 chr21 14891701 14892201 -20015369 - LOR1a LTR ERV1 0 497 1 479 139 0 0 chr21 14892230 14892309 -20015261 - LOR1a-int LTR ERV1 -12 8108 8030 1827 98 0 4 chr21 14892308 14892563 -20015007 - LOR1a-int LTR ERV1 -2056 6064 5811 4224 127 63 18 chr21 14892565 14893187 -20014383 - LOR1a-int LTR ERV1 -2597 5523 4859 1486 199 17 10 chr21 14893187 14893478 -20014092 + AluJb SINE Alu 3 295 -17 4224 127 63 18 chr21 14893478 14893618 -20013952 - LOR1a-int LTR ERV1 -3261 4859 4727 1595 141 16 46 chr21 14893597 14893902 -20013668 - LOR1a-int LTR ERV1 -3873 4247 3952 13812 108 20 20 chr21 14893919 14896165 -20011405 - LOR1a-int LTR ERV1 -4431 3689 1444 21764 147 16 14 chr21 14896165 14897782 -20009788 - L1P3 LINE L1 -1299 5162 3550 185 0 40 0 chr21 14897782 14897807 -20009763 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21764 147 16 14 chr21 14897807 14901298 -20006272 - L1P3 LINE L1 -2911 3550 3 6406 124 60 5 chr21 14901299 14902307 -20005263 - LOR1a-int LTR ERV1 -7057 1063 1 3176 154 6 0 chr21 14902308 14902801 -20004769 - LOR1a LTR ERV1 -1 496 1 763 160 17 0 chr21 14902801 14902920 -20004650 + FAM SINE Alu 51 171 -14 27 29 0 0 chr21 14904411 14904445 -20003125 + AT_rich Low_complexity Low_complexity 1 34 0 682 219 0 7 chr21 14904445 14904582 -20002988 - AluSq/x SINE Alu -177 136 1 1564 189 39 4 chr21 14904617 14904898 -20002672 - AluJo SINE Alu -21 291 1 649 225 91 87 chr21 14905523 14905799 -20001771 + LTR16A1 LTR ERVL 45 321 -136 299 326 41 0 chr21 14905824 14905922 -20001648 + LTR33A LTR ERVL 59 160 -363 234 231 0 0 chr21 14905946 14905985 -20001585 - MER50 LTR ERV1 -23 711 673 1493 101 5 10 chr21 14905996 14906203 -20001367 + AluSg/x SINE Alu 87 292 -18 22 35 0 0 chr21 14908372 14908401 -19999169 + AT_rich Low_complexity Low_complexity 1 29 0 2001 100 22 0 chr21 14909242 14909539 -19998031 + AluSx SINE Alu 6 308 0 925 209 66 50 chr21 14909989 14910290 -19997280 + LTR56 LTR ERV1 140 445 0 192 262 95 36 chr21 14911903 14911987 -19995583 - MER5B DNA MER1_type -20 158 70 22 0 0 0 chr21 14912335 14912357 -19995213 + AT_rich Low_complexity Low_complexity 1 22 0 2442 39 0 0 chr21 14912766 14913048 -19994522 - AluY SINE Alu -10 301 20 454 244 22 103 chr21 14914841 14915112 -19992458 + LTR37B LTR ERV1 209 457 -11 290 244 26 39 chr21 14916177 14916255 -19991315 - L2 LINE L2 -4 3309 3233 221 316 13 13 chr21 14916474 14916550 -19991020 - MIR SINE MIR -5 257 182 30 77 0 0 chr21 14917195 14917260 -19990310 + AT_rich Low_complexity Low_complexity 1 65 0 304 232 21 42 chr21 14917551 14917646 -19989924 - MLT1J LTR MaLR -43 468 376 216 274 0 0 chr21 14918070 14918121 -19989449 + (TG)n Simple_repeat Simple_repeat 1 51 0 22 56 0 0 chr21 14918786 14918822 -19988748 + AT_rich Low_complexity Low_complexity 1 36 0 1894 144 7 14 chr21 14918822 14919113 -19988457 - AluSx SINE Alu -19 293 5 5779 111 8 6 chr21 14920105 14920946 -19986624 - MER4B-int LTR ERV1 -2055 4703 3861 2544 172 38 34 chr21 14921185 14921415 -19986155 + MER70A LTR ERVL 1 229 -243 2135 78 4 0 chr21 14921415 14921684 -19985886 + AluSq SINE Alu 2 271 -42 2544 172 38 34 chr21 14921684 14921822 -19985748 + MER70A LTR ERVL 229 374 -98 2172 119 23 14 chr21 14921822 14922174 -19985396 - THE1A LTR MaLR 0 355 1 2544 172 38 34 chr21 14922174 14922274 -19985296 + MER70A LTR ERVL 374 472 0 255 133 0 0 chr21 14923521 14923566 -19984004 + (CA)n Simple_repeat Simple_repeat 2 46 0 763 313 32 4 chr21 14923906 14924155 -19983415 + MIR SINE MIR 1 256 -6 185 259 118 12 chr21 14925690 14925775 -19981795 + MIR SINE MIR 51 144 -118 2263 126 0 0 chr21 14926070 14926380 -19981190 + AluSg SINE Alu 1 310 0 721 276 23 49 chr21 14927718 14927982 -19979588 - HERV16 LTR ERVL -1339 3657 3401 362 325 33 0 chr21 14928429 14928549 -19979021 - LTR16B LTR ERVL -338 126 3 355 339 16 0 chr21 14928886 14929010 -19978560 + L2 LINE L2 3188 3313 0 198 0 0 0 chr21 14929231 14929253 -19978317 + (A)n Simple_repeat Simple_repeat 1 22 0 909 231 0 2 chr21 14930111 14930366 -19977204 + MER2 DNA MER2_type 41 335 -9 2080 150 27 21 chr21 14931949 14932322 -19975248 + THE1C LTR MaLR 1 375 0 2401 129 17 0 chr21 14932622 14932978 -19974592 - THE1B LTR MaLR 0 364 3 10424 105 26 31 chr21 14932980 14934569 -19973001 - THE1B-int LTR MaLR 0 1580 1 2298 145 17 3 chr21 14934569 14934928 -19972642 - THE1B LTR MaLR 0 364 1 1752 171 133 81 chr21 14935403 14935883 -19971687 - MLT1D LTR MaLR 0 505 1 393 326 39 55 chr21 14936859 14937166 -19970404 + L2 LINE L2 1527 1828 -1486 2525 152 16 16 chr21 14937424 14937852 -19969718 - MSTA LTR MaLR 0 428 1 313 287 30 40 chr21 14937899 14937968 -19969602 - L1MC4a LINE L1 -1908 5900 5832 369 0 0 0 chr21 14937968 14938009 -19969561 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 313 287 30 40 chr21 14938009 14938141 -19969429 - L1MC4a LINE L1 -1976 5832 5701 315 284 127 12 chr21 14938312 14938558 -19969012 - L1MEd LINE L1 -5394 725 420 1446 227 46 33 chr21 14939140 14939183 -19968387 - MLT2B2 LTR ERVL 0 453 412 579 85 0 0 chr21 14939183 14939265 -19968305 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 1446 227 46 33 chr21 14939265 14939650 -19967920 - MLT2B2 LTR ERVL -41 412 20 352 310 101 50 chr21 14940528 14940635 -19966935 + L2 LINE L2 2935 3035 -278 2124 114 30 0 chr21 14940635 14940809 -19966761 - AluSx SINE Alu -6 306 118 224 30 30 0 chr21 14940809 14940842 -19966728 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2124 114 30 0 chr21 14940842 14940964 -19966606 - AluSx SINE Alu -194 118 1 352 310 101 50 chr21 14940964 14941214 -19966356 + L2 LINE L2 3035 3310 -3 251 310 95 26 chr21 14942339 14942455 -19965115 - MIR3 SINE MIR -51 157 34 2288 104 3 0 chr21 14942572 14942879 -19964691 - AluSc SINE Alu -1 308 1 22 35 0 0 chr21 14942907 14942936 -19964634 + AT_rich Low_complexity Low_complexity 1 29 0 3464 86 0 24 chr21 14942937 14943428 -19964142 - L1PB1 LINE L1 -7 6144 5666 526 269 29 6 chr21 14944352 14944523 -19963047 - MLT1J2 LTR MaLR -275 175 1 22 35 0 0 chr21 14944544 14944573 -19962997 + AT_rich Low_complexity Low_complexity 1 29 0 231 36 0 0 chr21 14945559 14945587 -19961983 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 1557 222 37 24 chr21 14945843 14946152 -19961418 + MLT1C LTR MaLR 2 320 -147 3783 109 4 11 chr21 14946152 14946710 -19960860 - MER41A LTR ERV1 0 554 1 1557 222 37 24 chr21 14946710 14946860 -19960710 + MLT1C LTR MaLR 320 467 0 486 75 0 0 chr21 14949032 14949099 -19958471 + (TG)n Simple_repeat Simple_repeat 2 68 0 2652 115 24 0 chr21 14949522 14949931 -19957639 - MSTA LTR MaLR -9 419 1 2335 68 0 77 chr21 14950258 14950583 -19956987 + AluSg SINE Alu 1 300 -10 589 277 46 42 chr21 14950692 14950940 -19956630 - MIR SINE MIR -10 252 1 232 278 0 0 chr21 14951565 14951619 -19955951 + (CATA)n Simple_repeat Simple_repeat 4 57 0 2340 104 0 0 chr21 14952337 14952635 -19954935 + AluSx SINE Alu 1 298 -14 405 0 0 0 chr21 14952982 14953027 -19954543 + (TG)n Simple_repeat Simple_repeat 2 46 0 1652 221 77 15 chr21 14953039 14953495 -19954075 + MLT1D LTR MaLR 20 503 -2 2179 103 0 7 chr21 14953639 14953941 -19953629 - AluSg SINE Alu -10 300 1 430 225 40 46 chr21 14954633 14954784 -19952786 - MER63A DNA MER1_type -21 189 40 502 192 19 0 chr21 14954938 14955042 -19952528 - ORSL DNA AcHobo 0 275 170 554 208 13 27 chr21 14955097 14955246 -19952324 - ORSL DNA AcHobo -125 150 4 1637 152 106 29 chr21 14955563 14955911 -19951659 + THE1C LTR MaLR 1 375 0 309 198 0 0 chr21 14956032 14956123 -19951447 + T-rich Low_complexity Low_complexity 1 91 0 11880 219 32 16 chr21 14956154 14956794 -19950776 - L1PB3 LINE L1 -4 6207 5578 2360 109 0 0 chr21 14956794 14957105 -19950465 + AluY SINE Alu 1 311 0 11880 219 32 16 chr21 14957105 14959077 -19948493 - L1PB3 LINE L1 -633 5578 3638 2416 95 0 0 chr21 14959077 14959381 -19948189 - AluSx SINE Alu -8 304 1 11880 219 32 16 chr21 14959381 14961012 -19946558 - L1PB3 LINE L1 -2573 3638 1808 1107 149 21 0 chr21 14961012 14961200 -19946370 - L1PA15 LINE L1 -5 6160 5969 11880 219 32 16 chr21 14961200 14962494 -19945076 - L1PB3 LINE L1 -4403 1808 535 1094 186 108 16 chr21 14962565 14962823 -19944747 - L1PB3 LINE L1 -5765 439 158 1810 182 35 27 chr21 14962827 14963375 -19944195 - MLT2A2 LTR ERVL -8 546 1 741 175 32 7 chr21 14963380 14963534 -19944036 - L1PB3 LINE L1 -6046 158 1 2370 304 57 38 chr21 14963508 14965060 -19942510 - L1PBa LINE L1 -5233 1630 49 1151 176 25 0 chr21 14965167 14965405 -19942165 - L1MA6 LINE L1 -4 6296 6053 2763 82 92 5 chr21 14965571 14965983 -19941587 - LTR7 LTR ERV1 -2 448 1 444 322 13 20 chr21 14966125 14966274 -19941296 - MER5A DNA MER1_type -7 182 35 382 328 92 11 chr21 14966437 14966611 -19940959 - MIR SINE MIR -54 208 21 180 0 0 0 chr21 14966732 14966752 -19940818 + (TTG)n Simple_repeat Simple_repeat 2 21 0 822 173 62 6 chr21 14966767 14966946 -19940624 + LTR64 LTR ERVK 1 189 -369 1799 123 0 0 chr21 14966946 14967198 -19940372 + AluSg SINE Alu 1 252 -58 2313 124 0 0 chr21 14967243 14967589 -19939981 - L1PA15 LINE L1 -5 6160 5815 230 86 0 0 chr21 14967609 14967644 -19939926 - L1PA15 LINE L1 -744 5421 5387 1735 258 54 56 chr21 14967699 14968416 -19939154 + MER72 LTR ERV1 7 722 0 2142 145 0 0 chr21 14969165 14969475 -19938095 - AluSx SINE Alu -2 310 1 314 314 89 8 chr21 14969481 14969605 -19937965 + L2 LINE L2 3180 3313 0 388 76 0 238 chr21 14969933 14970038 -19937532 + MADE1 DNA Mariner 1 80 0 1565 203 28 25 chr21 14971256 14971620 -19935950 - MLT1A1 LTR MaLR 0 365 1 391 331 121 4 chr21 14971826 14972083 -19935487 - HERVL LTR ERVL -1047 4607 4321 687 314 39 31 chr21 14972131 14972679 -19934891 - HERVL LTR ERVL -1326 3670 3397 2069 117 31 0 chr21 14973308 14973598 -19933972 + AluSg SINE Alu 1 299 -11 393 221 0 0 chr21 14973648 14973725 -19933845 + MER45 DNA AcHobo 11 87 -866 2521 60 0 0 chr21 14973780 14974079 -19933491 - AluY SINE Alu -12 299 1 1674 231 40 29 chr21 14974955 14975521 -19932049 + MER90 LTR ERV1 1 614 0 1719 166 27 19 chr21 14975850 14976224 -19931346 + L1MB8 LINE L1 5781 6157 -21 209 183 24 49 chr21 14976227 14976309 -19931261 + (TATATG)n Simple_repeat Simple_repeat 5 84 0 348 311 99 0 chr21 14976459 14976620 -19930950 + L1ME4a LINE L1 5940 6116 -5 4311 65 2 2 chr21 14976840 14977397 -19930173 - L1PA5 LINE L1 -1 6153 5597 1633 157 4 4 chr21 14978224 14978472 -19929098 - AluJo SINE Alu -64 248 1 1281 222 52 12 chr21 14978580 14978926 -19928644 + MLT1A2 LTR MaLR 1 360 -14 28 0 0 0 chr21 14979001 14979029 -19928541 + AT_rich Low_complexity Low_complexity 1 28 0 2044 140 0 3 chr21 14980419 14980712 -19926858 - AluSq SINE Alu -21 292 1 3279 133 6 8 chr21 14982168 14982701 -19924869 + L1PA13 LINE L1 5628 6159 -4 840 153 0 0 chr21 14982965 14983096 -19924474 - FLAM_C SINE Alu -2 131 1 759 279 40 43 chr21 14983165 14983513 -19924057 - HAL1 LINE L1 -697 1810 1464 431 238 76 22 chr21 14983659 14983882 -19923688 - HAL1 LINE L1 -1241 1266 1032 400 231 147 40 chr21 14984526 14984777 -19922793 + L1MC4a LINE L1 5856 6133 -1675 21 57 0 0 chr21 14984803 14984838 -19922732 + AT_rich Low_complexity Low_complexity 1 35 0 225 253 38 0 chr21 14985128 14985207 -19922363 + L1 LINE L1 4747 4828 -1318 380 227 21 10 chr21 14985298 14985395 -19922175 + MLT1J2 LTR MaLR 82 179 -271 218 205 0 0 chr21 14986139 14986178 -19921392 + (TATG)n Simple_repeat Simple_repeat 2 40 0 180 0 0 0 chr21 14987426 14987446 -19920124 + (CAA)n Simple_repeat Simple_repeat 2 21 0 27 62 0 0 chr21 14987683 14987731 -19919839 + AT_rich Low_complexity Low_complexity 1 48 0 1353 341 67 33 chr21 14987807 14989084 -19918486 - HERVL LTR ERVL -1113 4541 3222 383 298 51 11 chr21 14990234 14990412 -19917158 - HERVL LTR ERVL -3757 2007 1823 281 353 28 28 chr21 14990465 14990748 -19916822 - HERVL LTR ERVL -3969 1795 1513 646 244 75 38 chr21 14991948 14992191 -19915379 - MLT1E LTR MaLR -19 607 317 1180 244 47 19 chr21 14992238 14992557 -19915013 + MLT2D LTR ERVL 83 410 -4 632 270 24 24 chr21 14992559 14992770 -19914800 - MLT1E LTR MaLR -382 211 1 1108 188 107 71 chr21 14993352 14993646 -19913924 - LTR8A LTR ERV1 0 727 365 2229 124 0 0 chr21 14993646 14993945 -19913625 + AluSc SINE Alu 1 299 -10 1108 188 107 71 chr21 14993945 14994134 -19913436 - LTR8A LTR ERV1 -362 365 184 471 192 0 10 chr21 14994166 14994265 -19913305 + MER4A LTR ERV1 1 98 -566 1908 109 3 22 chr21 14994267 14994617 -19912953 + MER4A LTR ERV1 263 664 0 708 163 82 0 chr21 14994622 14994757 -19912813 - LTR8 LTR ERV1 -545 146 1 577 234 34 57 chr21 14995629 14995687 -19911883 + MER45A DNA AcHobo 8 66 -1515 333 0 0 0 chr21 14995687 14995724 -19911846 + (CA)n Simple_repeat Simple_repeat 1 37 0 577 234 34 57 chr21 14995724 14995840 -19911730 + MER45A DNA AcHobo 66 178 0 285 29 0 0 chr21 14996405 14996439 -19911131 + (TG)n Simple_repeat Simple_repeat 1 34 0 2130 105 0 3 chr21 14996439 14996719 -19910851 - AluSg SINE Alu -31 279 1 1670 122 4 0 chr21 14996892 14997155 -19910415 - Tigger4(Zombi) DNA MER2_type 0 2731 2468 235 226 129 0 chr21 14997152 14997214 -19910356 - Tigger4(Zombi) DNA MER2_type -2654 77 8 1774 92 142 0 chr21 14997249 14997509 -19910061 + AluSx SINE Alu 1 297 -5 474 49 0 0 chr21 14997581 14997642 -19909928 + (CA)n Simple_repeat Simple_repeat 2 62 0 402 57 0 0 chr21 14999075 14999128 -19908442 + (CA)n Simple_repeat Simple_repeat 2 54 0 2071 116 0 14 chr21 14999138 14999432 -19908138 - AluSc SINE Alu -19 290 1 1545 107 12 0 chr21 14999440 14999684 -19907886 - L1MA4 LINE L1 -5 6295 6049 23 33 0 0 chr21 14999746 14999776 -19907794 + AT_rich Low_complexity Low_complexity 1 30 0 275 153 66 7 chr21 14999848 14999985 -19907585 + (TA)n Simple_repeat Simple_repeat 1 145 0 21 57 0 0 chr21 15000036 15000071 -19907499 + AT_rich Low_complexity Low_complexity 1 35 0 1655 186 3 44 chr21 15000333 15000651 -19906919 + AluJo SINE Alu 1 305 -7 270 116 0 0 chr21 15001706 15001749 -19905821 + (TG)n Simple_repeat Simple_repeat 1 43 0 2630 42 0 0 chr21 15001857 15002165 -19905405 + AluY SINE Alu 1 308 -3 687 302 12 49 chr21 15002222 15002467 -19905103 - L2 LINE L2 -383 2931 2696 761 162 66 0 chr21 15002586 15002753 -19904817 - MER2 DNA MER2_type -134 210 33 1535 309 50 27 chr21 15002811 15003460 -19904110 - L2 LINE L2 -675 2639 1930 355 302 99 42 chr21 15003545 15003757 -19903813 + L1MEd LINE L1 3 226 -5893 932 114 0 0 chr21 15003765 15003897 -19903673 - AluSg/x SINE Alu 0 310 179 383 350 57 20 chr21 15003971 15004217 -19903353 + L1MEd LINE L1 2566 2820 -3309 418 320 30 9 chr21 15004474 15004684 -19902886 - MER20B DNA MER1_type -2 217 1 505 309 83 28 chr21 15004684 15005008 -19902562 + L1MEd LINE L1 3060 3401 -2728 2125 123 0 3 chr21 15005195 15005496 -19902074 - AluY SINE Alu -11 300 1 618 307 60 32 chr21 15005540 15006110 -19901460 + L1MEd LINE L1 3600 4185 -1944 183 0 135 0 chr21 15006293 15006330 -19901240 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 326 93 0 20 chr21 15008185 15008240 -19899330 - MLT2C2 LTR ERVL 0 464 400 297 0 0 0 chr21 15008263 15008296 -19899274 + (CA)n Simple_repeat Simple_repeat 2 34 0 533 146 0 0 chr21 15008296 15008378 -19899192 - Tigger7 DNA MER2_type -2 2485 2404 2575 208 10 8 chr21 15008387 15008906 -19898664 - Tigger7 DNA MER2_type -1967 520 1 349 288 27 0 chr21 15008984 15009095 -19898475 - MLT2C2 LTR ERVL -45 419 306 491 245 83 42 chr21 15009161 15009353 -19898217 - MLT2D LTR ERVL -122 292 93 1935 152 10 7 chr21 15010140 15010443 -19897127 - AluJb SINE Alu -8 304 1 445 211 34 75 chr21 15011970 15012092 -19895478 - MLT1H LTR MaLR -3 546 429 2215 130 3 0 chr21 15012092 15012399 -19895171 - AluSx SINE Alu -4 308 1 445 211 34 75 chr21 15012399 15012423 -19895147 - MLT1H LTR MaLR -120 429 406 3133 189 14 2 chr21 15012612 15013163 -19894407 - MER68 LTR ERV1 0 562 5 22 0 0 0 chr21 15014727 15014749 -19892821 + AT_rich Low_complexity Low_complexity 1 22 0 307 327 60 42 chr21 15014760 15014977 -19892593 - MIR SINE MIR -18 244 24 360 272 128 43 chr21 15015980 15016215 -19891355 - MIR SINE MIR 0 262 8 23 33 0 0 chr21 15017862 15017892 -19889678 + AT_rich Low_complexity Low_complexity 1 30 0 2098 130 33 0 chr21 15018124 15018423 -19889147 + AluSq SINE Alu 1 309 -4 2291 60 0 0 chr21 15019725 15020008 -19887562 - AluY SINE Alu -7 304 22 1019 111 7 0 chr21 15020853 15020988 -19886582 - AluSq/x SINE Alu -177 136 1 2535 62 0 7 chr21 15020996 15021302 -19886268 - AluSc SINE Alu -5 304 1 524 164 31 8 chr21 15021618 15021746 -19885824 - MER96B DNA MER1_type? -31 386 256 280 315 80 42 chr21 15022244 15022482 -19885088 + L2 LINE L2 2017 2263 -1051 2154 100 3 17 chr21 15022621 15022921 -19884649 + AluSx SINE Alu 1 296 -16 2331 97 3 0 chr21 15023036 15023346 -19884224 - AluY SINE Alu 0 311 1 27 0 0 0 chr21 15023579 15023606 -19883964 + AT_rich Low_complexity Low_complexity 1 27 0 4931 45 0 0 chr21 15023606 15024206 -19883364 - L1PA4 LINE L1 -3 6152 5553 1460 293 68 29 chr21 15024506 15025157 -19882413 - L2 LINE L2 -274 3039 2376 766 286 31 0 chr21 15025200 15025427 -19882143 - L2 LINE L2 -931 2383 2150 2084 106 35 0 chr21 15025432 15025715 -19881855 - AluSx SINE Alu -19 293 1 4674 135 4 14 chr21 15025742 15026549 -19881021 - L1PA16 LINE L1 -1 6165 5367 529 212 58 0 chr21 15026576 15026713 -19880857 - L2 LINE L2 -1232 2082 1938 1494 75 0 37 chr21 15028538 15028752 -19878818 + L1PA13 LINE L1 5939 6144 -19 1358 234 10 0 chr21 15028839 15029134 -19878436 - AluJb SINE Alu -10 302 5 202 337 61 0 chr21 15029584 15029682 -19877888 + MIR SINE MIR 116 219 -43 2104 194 55 26 chr21 15029720 15030211 -19877359 - MLT1D LTR MaLR 0 505 1 188 260 0 0 chr21 15030497 15030547 -19877023 - L2 LINE L2 -1 3312 3263 21 0 0 0 chr21 15031284 15031305 -19876265 + AT_rich Low_complexity Low_complexity 1 21 0 1961 152 21 0 chr21 15033906 15034196 -19873374 - AluSx SINE Alu -16 296 1 472 314 141 0 chr21 15035054 15035245 -19872325 - MIR SINE MIR -32 230 13 1957 124 154 3 chr21 15035338 15035702 -19871868 + MSTA LTR MaLR 1 419 -9 431 258 127 27 chr21 15037672 15037893 -19869677 - MLT1J LTR MaLR -22 489 247 234 0 0 0 chr21 15038492 15038518 -19869052 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr21 15041126 15041148 -19866422 + AT_rich Low_complexity Low_complexity 1 22 0 2682 160 69 2 chr21 15043862 15044398 -19863172 - L1MB3 LINE L1 0 6183 5612 2025 150 25 74 chr21 15044831 15045264 -19862306 - MLT2D LTR ERVL 0 414 3 1563 189 26 0 chr21 15046119 15046421 -19861149 + AluJb SINE Alu 1 310 -2 29 70 0 0 chr21 15047292 15047349 -19860221 + AT_rich Low_complexity Low_complexity 1 57 0 507 118 0 0 chr21 15047515 15047600 -19859970 + (TG)n Simple_repeat Simple_repeat 2 86 0 246 300 0 0 chr21 15047600 15047660 -19859910 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 270 164 0 0 chr21 15047662 15047717 -19859853 - L1MC4 LINE L1 -1339 6703 6649 288 0 0 0 chr21 15047717 15047749 -19859821 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 67 0 0 chr21 15048106 15048151 -19859419 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr21 15048358 15048382 -19859188 + AT_rich Low_complexity Low_complexity 1 24 0 30 77 0 0 chr21 15048420 15048485 -19859085 + AT_rich Low_complexity Low_complexity 1 65 0 330 206 34 34 chr21 15048491 15048666 -19858904 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 38 22 0 0 chr21 15048669 15048714 -19858856 + AT_rich Low_complexity Low_complexity 1 45 0 336 162 58 16 chr21 15048745 15049066 -19858504 + (TA)n Simple_repeat Simple_repeat 1 334 0 258 350 5 16 chr21 15050166 15050289 -19857281 - MIR3 SINE MIR -35 173 49 588 284 92 23 chr21 15050987 15051205 -19856365 - MIR SINE MIR -20 242 10 907 281 49 18 chr21 15051218 15051606 -19855964 - MARNA DNA Mariner -31 555 156 228 196 11 54 chr21 15052264 15052356 -19855214 + CT-rich Low_complexity Low_complexity 3 90 0 223 167 0 0 chr21 15052523 15052559 -19855011 + CT-rich Low_complexity Low_complexity 3 38 0 2095 125 49 30 chr21 15054246 15054614 -19852956 + THE1C LTR MaLR 1 375 0 219 69 0 0 chr21 15055037 15055066 -19852504 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 269 214 139 65 chr21 15055285 15055486 -19852084 - L1MC5 LINE L1 -32 7929 7714 1955 152 88 42 chr21 15055697 15055995 -19851575 - MSTA LTR MaLR 0 428 104 2472 59 0 28 chr21 15055995 15056315 -19851255 + AluY SINE Alu 1 311 0 1955 152 88 42 chr21 15056315 15056425 -19851145 - MSTA LTR MaLR -324 104 1 1997 156 32 58 chr21 15057545 15058013 -19849557 - MSTB2 LTR MaLR 0 457 2 1921 127 41 7 chr21 15058189 15058480 -19849090 + AluSx SINE Alu 1 301 -11 227 217 67 0 chr21 15058575 15058635 -19848935 - L1ME LINE L1 -428 5693 5630 614 126 0 0 chr21 15059101 15059196 -19848374 + L1PB4 LINE L1 6050 6144 -12 309 300 118 59 chr21 15059582 15059869 -19847701 - L1ME LINE L1 -593 5569 5266 203 125 25 0 chr21 15059989 15060029 -19847541 + (TG)n Simple_repeat Simple_repeat 2 42 0 1000 226 4 38 chr21 15060133 15060398 -19847172 + MLT2B1 LTR ERVL 1 256 -264 274 226 0 0 chr21 15060523 15060585 -19846985 + MLT2B1 LTR ERVL 375 436 -84 252 0 0 0 chr21 15060620 15060648 -19846922 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 181 330 148 26 chr21 15060735 15060850 -19846720 + L2 LINE L2 2446 2574 -740 271 169 28 28 chr21 15060851 15060922 -19846648 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 313 104 0 0 chr21 15060927 15060975 -19846595 + MLT2B1 LTR ERVL 473 520 0 22 35 0 0 chr21 15061622 15061651 -19845919 + AT_rich Low_complexity Low_complexity 1 29 0 349 308 66 22 chr21 15061831 15062013 -19845557 - L1MEc LINE L1 -4027 2369 2180 198 0 0 0 chr21 15062414 15062436 -19845134 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 380 243 59 67 chr21 15062649 15062888 -19844682 + L2 LINE L2 2700 2936 -378 3051 287 30 38 chr21 15063787 15065473 -19842097 + L1PBa LINE L1 3 1644 -5219 1970 100 45 24 chr21 15066293 15066624 -19840946 + THE1B LTR MaLR 1 338 -26 25 83 0 0 chr21 15067662 15067722 -19839848 + AT_rich Low_complexity Low_complexity 1 60 0 555 252 43 79 chr21 15069997 15070275 -19837295 + L2 LINE L2 3046 3313 0 2186 104 30 0 chr21 15072505 15072802 -19834768 + AluSx SINE Alu 1 306 -6 222 271 17 0 chr21 15080642 15080701 -19826869 - MIR SINE MIR -126 136 77 192 152 0 0 chr21 15080964 15080997 -19826573 + T-rich Low_complexity Low_complexity 1 33 0 210 248 79 99 chr21 15081810 15081911 -19825659 + L3 LINE CR1 1411 1509 -68 340 303 84 19 chr21 15082404 15082559 -19825011 + MIR SINE MIR 8 172 -90 844 236 77 0 chr21 15082979 15083187 -19824383 + MER58A DNA MER1_type 1 224 0 2075 163 134 48 chr21 15083632 15084111 -19823459 - MLT2B1 LTR ERVL 0 520 1 200 161 0 0 chr21 15084698 15084729 -19822841 - L2 LINE L2 -17 3296 3266 291 276 173 8 chr21 15084732 15084859 -19822711 - MIR SINE MIR -55 207 60 234 276 163 32 chr21 15084935 15085058 -19822512 + MIR3 SINE MIR 17 155 -53 1453 165 56 0 chr21 15085469 15085736 -19821834 + MER7A DNA MER2_type 1 280 -66 5749 52 52 11 chr21 15085736 15086485 -19821085 + LTR17 LTR ERV1 1 780 0 13738 50 11 38 chr21 15086485 15088400 -19819170 + HERV17 LTR ERV1 1 1865 -6761 28749 49 7 2 chr21 15088396 15092023 -19815547 + HERV17 LTR ERV1 1679 5322 -3304 4240 65 5 2 chr21 15092014 15092571 -19814999 + HERV17 LTR ERV1 8068 8626 0 5623 51 1 0 chr21 15092571 15093278 -19814292 + LTR17 LTR ERV1 1 708 -72 368 221 0 0 chr21 15093308 15093376 -19814194 + MER7A DNA MER2_type 269 336 0 21 0 0 0 chr21 15094454 15094475 -19813095 + AT_rich Low_complexity Low_complexity 1 21 0 2107 114 7 13 chr21 15094605 15094903 -19812667 - AluSc SINE Alu -11 298 3 205 262 0 0 chr21 15095009 15095051 -19812519 + polypyrimidine Low_complexity Low_complexity 3 44 0 25 0 0 0 chr21 15095051 15095076 -19812494 + AT_rich Low_complexity Low_complexity 1 25 0 30 0 0 0 chr21 15095962 15095992 -19811578 + AT_rich Low_complexity Low_complexity 1 30 0 2486 87 0 0 chr21 15096028 15096339 -19811231 - AluY SINE Alu 0 311 1 222 299 65 19 chr21 15097080 15097187 -19810383 - MIR SINE MIR -1 261 150 620 167 61 8 chr21 15097251 15097383 -19810187 + MLT1I LTR MaLR 5 143 -266 926 219 5 9 chr21 15097580 15097787 -19809783 - MLT1A1 LTR MaLR -104 261 56 1874 139 44 40 chr21 15097787 15098311 -19809259 + MER51A LTR ERV1 1 618 -16 349 109 0 31 chr21 15098338 15098402 -19809168 - MLT1A1 LTR MaLR -303 62 1 569 279 101 13 chr21 15098822 15099059 -19808511 + L1MCc LINE L1 17 274 -6149 941 232 37 22 chr21 15099366 15099637 -19807933 - MLT2D LTR ERVL -138 276 2 303 71 0 0 chr21 15099647 15099689 -19807881 + (TG)n Simple_repeat Simple_repeat 1 42 0 863 160 0 0 chr21 15099689 15099814 -19807756 - AluJb SINE Alu -33 279 155 205 232 36 0 chr21 15100062 15100118 -19807452 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 294 271 42 30 chr21 15101160 15101326 -19806244 + L1MCc LINE L1 818 985 -5946 382 302 81 57 chr21 15101529 15101900 -19805670 + L1MCc LINE L1 1257 1636 -5295 328 259 29 0 chr21 15101961 15102100 -19805470 + L1MCc LINE L1 1771 1913 -5018 3005 122 15 66 chr21 15102190 15102732 -19804838 - MER75 DNA T2_type 0 514 1 370 281 43 0 chr21 15102795 15102934 -19804636 + HAL1 LINE L1 1502 1646 -861 6314 121 28 30 chr21 15102991 15104000 -19803570 - LTR13 LTR ERVK 0 1007 1 754 161 0 29 chr21 15104333 15104470 -19803100 + FLAM_C SINE Alu 1 133 0 491 128 12 12 chr21 15104787 15104873 -19802697 - MSTB LTR MaLR -1 425 340 715 87 0 19 chr21 15104873 15104977 -19802593 - AluY SINE Alu -11 300 199 1783 146 24 39 chr21 15104982 15105317 -19802253 - MSTB LTR MaLR -96 330 1 630 313 18 15 chr21 15105337 15105672 -19801898 - L1M4 LINE L1 -901 5245 4910 698 264 113 65 chr21 15105780 15106242 -19801328 - MLT1H1 LTR MaLR -57 498 15 1964 75 0 0 chr21 15106242 15106497 -19801073 - L1PA7 LINE L1 -2 6152 5898 1197 276 11 3 chr21 15106599 15106965 -19800605 + L1ME1 LINE L1 5583 5951 -215 2020 193 83 23 chr21 15106968 15107449 -19800121 - MLT2B2 LTR ERVL 0 515 6 1408 281 49 32 chr21 15107635 15107892 -19799678 + L1MD3 LINE L1 6340 6591 -1404 342 67 0 0 chr21 15107892 15107937 -19799633 + (TG)n Simple_repeat Simple_repeat 1 45 0 1408 281 49 32 chr21 15107937 15108205 -19799365 + L1MD3 LINE L1 6591 6874 -1121 21 71 0 0 chr21 15109030 15109072 -19798498 + AT_rich Low_complexity Low_complexity 1 42 0 34 42 0 0 chr21 15109286 15109334 -19798236 + AT_rich Low_complexity Low_complexity 1 48 0 1015 183 89 0 chr21 15109374 15109620 -19797950 + L1MD3 LINE L1 7728 7995 0 23 33 0 0 chr21 15109743 15109773 -19797797 + AT_rich Low_complexity Low_complexity 1 30 0 2239 113 0 16 chr21 15110765 15111075 -19796495 - AluSx SINE Alu -7 305 1 30 0 0 0 chr21 15112103 15112133 -19795437 + AT_rich Low_complexity Low_complexity 1 30 0 1835 141 7 3 chr21 15114031 15114314 -19793256 + AluSx SINE Alu 21 304 -8 713 173 42 60 chr21 15114315 15114483 -19793087 + AluSg/x SINE Alu 133 297 -13 1934 159 14 32 chr21 15115368 15115738 -19791832 + MLT1A1 LTR MaLR 1 363 -2 1913 141 49 35 chr21 15117430 15117800 -19789770 + THE1C LTR MaLR 1 375 0 304 344 84 59 chr21 15118370 15118774 -19788796 - L2 LINE L2 -1 3271 2858 508 363 57 24 chr21 15118900 15119148 -19788422 - L2 LINE L2 -561 2753 2498 203 179 51 0 chr21 15121479 15121518 -19786052 + MIR SINE MIR 36 76 -186 318 254 8 34 chr21 15121674 15121792 -19785778 + (TATG)n Simple_repeat Simple_repeat 4 118 0 775 188 12 47 chr21 15121793 15121963 -19785607 - AluJb SINE Alu -29 283 120 1808 163 46 35 chr21 15122721 15123276 -19784294 + MLT2A2 LTR ERVL 1 554 0 208 139 0 0 chr21 15123476 15123512 -19784058 + (TA)n Simple_repeat Simple_repeat 2 37 0 971 189 38 38 chr21 15123917 15124235 -19783335 + MER33 DNA MER1_type 7 324 0 266 308 55 0 chr21 15124811 15124902 -19782668 - L2 LINE L2 -49 3264 3169 510 186 0 18 chr21 15126245 15126358 -19781212 - L1ME2 LINE L1 -287 6375 6265 562 228 45 35 chr21 15126398 15126600 -19780970 - L1ME2 LINE L1 -1086 5558 5355 780 246 87 12 chr21 15126681 15127095 -19780475 - L1ME2 LINE L1 -1297 5347 4903 28 29 0 0 chr21 15127142 15127177 -19780393 + AT_rich Low_complexity Low_complexity 1 35 0 915 287 38 7 chr21 15127289 15127582 -19779988 - L1ME2 LINE L1 -2157 4487 4186 7537 21 11 0 chr21 15127582 15128676 -19778894 - L1PA3 LINE L1 0 6155 5049 7619 38 0 0 chr21 15128676 15129670 -19777900 + L1P LINE L1 2540 3533 -2613 506 203 52 33 chr21 15129673 15129826 -19777744 - L1ME2 LINE L1 -2456 4188 4033 388 217 123 43 chr21 15129894 15129953 -19777617 - L1ME2 LINE L1 -4863 1679 1626 1967 156 35 24 chr21 15129953 15130324 -19777246 - THE1C LTR MaLR 0 375 1 388 217 123 43 chr21 15130324 15130402 -19777168 - L1ME2 LINE L1 -4916 1626 1531 375 282 68 4 chr21 15130402 15130650 -19776920 - L1ME2 LINE L1 -5174 1651 1388 2355 92 15 6 chr21 15133386 15133722 -19773848 + L1MA1 LINE L1 5960 6298 -4 2330 107 0 0 chr21 15135820 15136120 -19771450 + AluSx SINE Alu 1 300 -12 848 184 0 7 chr21 15136386 15136538 -19771032 + AluSx SINE Alu 5 155 -157 556 181 18 82 chr21 15136767 15136876 -19770694 - MER5B DNA MER1_type -18 160 46 185 0 40 0 chr21 15136876 15136901 -19770669 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 4797 139 25 15 chr21 15136903 15137193 -19770377 - L1MC1 LINE L1 -6 6327 6041 2176 123 19 27 chr21 15137193 15137560 -19770010 + THE1B LTR MaLR 1 364 0 4797 139 25 15 chr21 15137560 15138080 -19769490 - L1MC1 LINE L1 -292 6041 5509 556 181 18 82 chr21 15138080 15138138 -19769432 - MER5B DNA MER1_type -133 45 1 22 0 0 0 chr21 15138388 15138410 -19769160 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr21 15138984 15139021 -19768549 + AT_rich Low_complexity Low_complexity 1 37 0 210 118 0 0 chr21 15139296 15139330 -19768240 + (TG)n Simple_repeat Simple_repeat 2 35 0 277 214 11 22 chr21 15140289 15140378 -19767192 + CT-rich Low_complexity Low_complexity 3 90 0 719 252 62 29 chr21 15141397 15141607 -19765963 - MER20 DNA MER1_type -2 217 1 21 0 0 0 chr21 15143050 15143071 -19764499 + AT_rich Low_complexity Low_complexity 1 21 0 322 73 0 0 chr21 15143963 15144004 -19763566 + U2 snRNA snRNA 1 41 -147 588 280 54 31 chr21 15144285 15144662 -19762908 + MLT1H1 LTR MaLR 136 555 0 2112 167 51 17 chr21 15145027 15145536 -19762034 + LTR27 LTR ERV1 2 501 0 1751 220 72 50 chr21 15145644 15146217 -19761353 - MLT1E2 LTR MaLR -3 623 62 525 229 61 8 chr21 15146711 15146842 -19760728 - L2 LINE L2 -224 3089 2952 23 86 0 0 chr21 15152352 15152410 -19755160 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr21 15152746 15152767 -19754803 + AT_rich Low_complexity Low_complexity 1 21 0 564 274 18 0 chr21 15156346 15156510 -19751060 + MER5B DNA MER1_type 7 173 -5 1048 211 46 5 chr21 15157341 15157559 -19750011 + AluJo SINE Alu 55 281 -31 301 292 7 95 chr21 15157588 15157690 -19749880 - MIR SINE MIR -65 143 54 1955 138 17 0 chr21 15157690 15157986 -19749584 + AluSx SINE Alu 1 301 -11 301 292 7 95 chr21 15157986 15158020 -19749550 - MIR SINE MIR -154 54 19 209 242 48 16 chr21 15158452 15158514 -19749056 + L2 LINE L2 3210 3273 -40 1449 279 87 20 chr21 15158578 15159336 -19748234 - L2 LINE L2 -145 3168 2360 592 108 81 0 chr21 15159901 15160049 -19747521 + CT-rich Low_complexity Low_complexity 2 161 0 229 310 88 9 chr21 15160098 15160211 -19747359 + MIR3 SINE MIR 66 187 -21 203 234 31 0 chr21 15162026 15162090 -19745480 + (TA)n Simple_repeat Simple_repeat 1 66 0 2359 90 0 0 chr21 15162355 15162644 -19744926 - AluSc SINE Alu -20 289 1 2010 126 3 33 chr21 15163711 15164013 -19743557 + AluSg SINE Alu 1 293 -17 204 40 0 0 chr21 15166407 15166432 -19741138 + (TAA)n Simple_repeat Simple_repeat 1 25 0 221 357 0 0 chr21 15166596 15166666 -19740904 - L2 LINE L2 -3 3310 3241 597 256 0 26 chr21 15167202 15167358 -19740212 - MIR SINE MIR -32 230 79 21 0 0 0 chr21 15168682 15168703 -19738867 + AT_rich Low_complexity Low_complexity 1 21 0 2459 67 0 16 chr21 15169257 15169569 -19738001 + AluSq SINE Alu 1 307 -6 2187 119 0 3 chr21 15169825 15170128 -19737442 - AluSx SINE Alu -8 304 3 21 36 0 0 chr21 15173021 15173049 -19734521 + AT_rich Low_complexity Low_complexity 1 28 0 2180 122 0 3 chr21 15178720 15179031 -19728539 - AluSq SINE Alu 0 313 4 642 286 21 34 chr21 15180136 15180374 -19727196 + MIR SINE MIR 28 262 0 322 97 0 32 chr21 15180436 15180498 -19727072 + (TA)n Simple_repeat Simple_repeat 2 61 0 225 0 0 0 chr21 15180499 15180524 -19727046 + (GA)n Simple_repeat Simple_repeat 1 25 0 864 204 87 10 chr21 15180524 15180657 -19726913 - AluJo SINE Alu -39 273 119 236 77 26 0 chr21 15180657 15180696 -19726874 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 864 204 87 10 chr21 15180696 15180758 -19726812 - AluJo SINE Alu -193 119 63 1259 156 0 24 chr21 15182164 15182375 -19725195 - AluJo SINE Alu -21 291 86 1648 102 0 0 chr21 15182794 15183009 -19724561 + AluSq SINE Alu 99 313 0 285 330 28 9 chr21 15184470 15184576 -19722994 - MIR SINE MIR -63 145 38 308 258 10 41 chr21 15188630 15188727 -19718843 + (TATATG)n Simple_repeat Simple_repeat 4 97 0 389 20 20 0 chr21 15188729 15188779 -19718791 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 308 275 11 11 chr21 15190551 15190642 -19716928 + MIR3 SINE MIR 93 183 -25 186 318 135 16 chr21 15191118 15191244 -19716326 + L2 LINE L2 2590 2730 -584 936 243 0 81 chr21 15191716 15192049 -19715521 + MLT1A2 LTR MaLR 69 374 0 28 0 0 0 chr21 15194720 15194748 -19712822 + AT_rich Low_complexity Low_complexity 1 28 0 414 0 0 0 chr21 15194941 15194987 -19712583 + (A)n Simple_repeat Simple_repeat 1 46 0 191 344 70 47 chr21 15201392 15201520 -19706050 - L2 LINE L2 0 3272 3142 229 278 0 0 chr21 15204806 15204860 -19702710 + CT-rich Low_complexity Low_complexity 3 56 0 302 248 135 43 chr21 15205313 15205454 -19702116 - MLT1J2 LTR MaLR -21 429 276 524 321 50 14 chr21 15206643 15206861 -19700709 + MIR SINE MIR 37 262 0 340 206 0 0 chr21 15207389 15207457 -19700113 + L1MC4 LINE L1 6636 6703 -1339 1020 152 0 0 chr21 15207457 15207704 -19699866 + (TA)n Simple_repeat Simple_repeat 1 247 0 1814 122 42 68 chr21 15207832 15208217 -19699353 + THE1C LTR MaLR 1 375 0 1074 224 118 9 chr21 15209528 15209876 -19697694 - Charlie1b DNA MER1_type -1 522 137 328 206 15 0 chr21 15209977 15210045 -19697525 + MER5A DNA MER1_type 33 101 -88 1728 181 7 10 chr21 15210641 15210940 -19696630 - AluJo SINE Alu -12 300 3 27 49 0 0 chr21 15211054 15211095 -19696475 + AT_rich Low_complexity Low_complexity 1 41 0 189 94 0 0 chr21 15211301 15211333 -19696237 + (A)n Simple_repeat Simple_repeat 1 32 0 2596 62 0 0 chr21 15211892 15212198 -19695372 + AluY SINE Alu 1 306 -5 25 51 0 0 chr21 15212232 15212271 -19695299 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr21 15212509 15212530 -19695040 + AT_rich Low_complexity Low_complexity 1 21 0 328 349 90 40 chr21 15212624 15212925 -19694645 + HAL1b LINE L1 416 731 -617 1701 229 43 19 chr21 15212991 15213475 -19694095 + L1MC3 LINE L1 6891 7386 -399 549 318 17 31 chr21 15214556 15214688 -19692882 - MIR SINE MIR -3 259 132 2518 113 14 0 chr21 15214688 15215058 -19692512 + THE1C LTR MaLR 1 375 0 549 318 17 31 chr21 15215058 15215186 -19692384 - MIR SINE MIR -130 132 4 550 356 114 42 chr21 15217868 15218418 -19689152 + L2 LINE L2 2387 2976 -338 818 244 92 68 chr21 15218646 15219060 -19688510 - MLT1D LTR MaLR 0 505 82 3826 203 112 90 chr21 15219136 15220478 -19687092 - MLT1D-int LTR MaLR 0 1371 1 760 55 28 0 chr21 15220533 15220642 -19686928 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 571 268 34 72 chr21 15220719 15220970 -19686600 - MLT2C1 LTR ERVL -52 362 123 1790 146 14 34 chr21 15220970 15221264 -19686306 - AluJb SINE Alu -24 288 1 571 268 34 72 chr21 15221264 15221383 -19686187 - MLT2C1 LTR ERVL -291 123 1 1903 134 8 0 chr21 15222247 15222515 -19685055 + AluSx SINE Alu 23 292 -20 1879 120 11 21 chr21 15222873 15223156 -19684414 - AluSq SINE Alu -33 280 1 29 60 0 0 chr21 15223859 15223909 -19683661 + AT_rich Low_complexity Low_complexity 1 50 0 341 264 24 16 chr21 15224871 15224996 -19682574 - LTR33 LTR ERVL -2 519 394 1919 184 22 17 chr21 15225246 15225648 -19681922 - MER47B DNA MER2_type 0 418 15 691 208 10 78 chr21 15226049 15226241 -19681329 + MER8 DNA MER2_type 1 179 -60 338 194 0 42 chr21 15226208 15226280 -19681290 + MER2 DNA MER2_type 276 344 0 25 65 0 0 chr21 15226856 15226902 -19680668 + AT_rich Low_complexity Low_complexity 1 46 0 347 216 14 14 chr21 15226912 15227051 -19680519 + (TA)n Simple_repeat Simple_repeat 2 140 0 27 87 0 0 chr21 15227222 15227291 -19680279 + AT_rich Low_complexity Low_complexity 1 69 0 84 20 0 0 chr21 15227700 15227798 -19679772 + AT_rich Low_complexity Low_complexity 1 98 0 379 292 82 49 chr21 15228656 15228915 -19678655 - LTR16A1 LTR ERVL -173 284 15 291 190 0 0 chr21 15229044 15229102 -19678468 + (TATG)n Simple_repeat Simple_repeat 2 59 0 206 200 0 0 chr21 15229116 15229151 -19678419 + (CA)n Simple_repeat Simple_repeat 2 36 0 2652 45 0 0 chr21 15229226 15229536 -19678034 - AluY SINE Alu -1 310 1 2075 124 13 61 chr21 15230924 15231318 -19676252 - THE1C LTR MaLR 0 375 1 3715 150 13 2 chr21 15231701 15232308 -19675262 + L1PA15 LINE L1 5550 6163 -2 1496 189 18 14 chr21 15232337 15232640 -19674930 + AluJo SINE Alu 1 304 0 2216 134 25 6 chr21 15233915 15234272 -19673298 - THE1B LTR MaLR 0 364 1 285 157 23 0 chr21 15234479 15234545 -19673025 - L1MC4 LINE L1 -4 8038 7907 2022 236 53 31 chr21 15234566 15235172 -19672398 - L1MC4 LINE L1 -178 7864 7246 403 287 31 16 chr21 15235908 15236037 -19671533 + MER69A DNA AcHobo 39 169 -8 214 256 221 0 chr21 15236435 15236521 -19671049 + L2 LINE L2 3203 3307 -6 36 0 0 0 chr21 15236692 15236728 -19670842 + AT_rich Low_complexity Low_complexity 1 36 0 33 85 0 0 chr21 15236846 15236928 -19670642 + AT_rich Low_complexity Low_complexity 1 82 0 2182 100 19 3 chr21 15237125 15237444 -19670126 - L1PB2 LINE L1 -3 6148 5825 2037 136 27 6 chr21 15239290 15239621 -19667949 + THE1B LTR MaLR 1 338 -26 707 276 56 30 chr21 15240394 15240662 -19666908 + LTR16C LTR ERVL 217 491 0 295 282 60 67 chr21 15242818 15242967 -19664603 + L2 LINE L2 3166 3313 0 2212 188 49 11 chr21 15243132 15243580 -19663990 + MLT1C LTR MaLR 3 467 0 1759 162 54 0 chr21 15243618 15243914 -19663656 + AluJb SINE Alu 1 312 0 2417 115 0 52 chr21 15244425 15244809 -19662761 + THE1B LTR MaLR 1 364 0 26 0 0 0 chr21 15246070 15246096 -19661474 + AT_rich Low_complexity Low_complexity 1 26 0 32 75 0 0 chr21 15246121 15246188 -19661382 + AT_rich Low_complexity Low_complexity 1 67 0 25 31 0 0 chr21 15246450 15246482 -19661088 + AT_rich Low_complexity Low_complexity 1 32 0 243 0 0 0 chr21 15246615 15246642 -19660928 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2295 56 0 14 chr21 15246644 15246928 -19660642 - AluY SINE Alu -31 280 1 23 33 0 0 chr21 15246970 15247000 -19660570 + AT_rich Low_complexity Low_complexity 1 30 0 1630 119 48 20 chr21 15247600 15247893 -19659677 + L1PA10 LINE L1 5852 6152 -16 389 195 12 12 chr21 15248853 15248935 -19658635 + L2 LINE L2 60 141 -3173 1437 319 75 27 chr21 15248976 15249723 -19657847 + L2 LINE L2 214 996 -2318 1334 295 39 37 chr21 15249827 15249909 -19657661 + L2 LINE L2 982 1062 -2252 2326 160 38 16 chr21 15249909 15250334 -19657236 - Tigger2a DNA MER2_type 0 434 1 1334 295 39 37 chr21 15250334 15250716 -19656854 + L2 LINE L2 1062 1447 -1867 783 301 95 27 chr21 15250783 15251119 -19656451 + L2 LINE L2 2464 2822 -492 2097 130 0 0 chr21 15251480 15251779 -19655791 + AluY SINE Alu 1 299 -12 351 0 0 0 chr21 15252322 15252361 -19655209 + (CA)n Simple_repeat Simple_repeat 2 40 0 213 229 21 0 chr21 15252978 15253026 -19654544 + (CA)n Simple_repeat Simple_repeat 2 50 0 2166 109 0 0 chr21 15254875 15255160 -19652410 + AluSx SINE Alu 1 285 -27 678 117 49 6 chr21 15255160 15255322 -19652248 + (TA)n Simple_repeat Simple_repeat 2 170 0 249 304 62 27 chr21 15255553 15255665 -19651905 + MIR3 SINE MIR 62 177 -31 8808 43 8 5 chr21 15256633 15257698 -19649872 + MER11C LTR ERVK 3 1071 0 286 77 0 0 chr21 15257720 15257759 -19649811 - MADE1 DNA Mariner -41 39 1 1818 246 56 10 chr21 15257813 15258310 -19649260 + MLT2B1 LTR ERVL 1 520 0 22 56 0 0 chr21 15258756 15258792 -19648778 + AT_rich Low_complexity Low_complexity 1 36 0 597 292 51 35 chr21 15258922 15259353 -19648217 + L1MEc LINE L1 1233 1670 -4726 263 208 21 0 chr21 15259383 15259431 -19648139 + Tigger3(Golem) DNA MER2_type 29 77 -2952 1103 208 21 17 chr21 15259502 15259524 -19648046 + Tigger3(Golem) DNA MER2_type 2788 2808 -220 1128 203 8 37 chr21 15259524 15259770 -19647800 + MER8 DNA MER2_type 1 239 0 1103 208 21 17 chr21 15259770 15259987 -19647583 + Tigger3(Golem) DNA MER2_type 2808 3028 0 755 208 45 66 chr21 15259991 15260280 -19647290 + L1MEc LINE L1 2719 3001 -3214 243 156 62 0 chr21 15260386 15260450 -19647120 + L1MEc LINE L1 3942 4009 -2206 982 298 58 31 chr21 15260623 15260898 -19646672 + L1MEc LINE L1 4412 4707 -1508 252 86 0 0 chr21 15260898 15260933 -19646637 + (TG)n Simple_repeat Simple_repeat 1 35 0 982 298 58 31 chr21 15260933 15261140 -19646430 + L1MEc LINE L1 4707 4907 -1308 4773 153 26 16 chr21 15261534 15261769 -19645801 - MER6 DNA MER2_type 0 865 634 2490 62 0 3 chr21 15261769 15262075 -19645495 + AluY SINE Alu 1 305 -6 4773 153 26 16 chr21 15262075 15262695 -19644875 - MER6 DNA MER2_type -231 634 2 299 269 63 54 chr21 15262820 15263043 -19644527 + L1M4 LINE L1 4377 4601 -1545 354 352 71 25 chr21 15263774 15263970 -19643600 - L3 LINE CR1 -90 1487 1283 2301 88 3 23 chr21 15263992 15264300 -19643270 - AluSp SINE Alu -11 302 1 298 317 130 29 chr21 15264441 15264649 -19642921 + L2 LINE L2 2346 2574 -740 1197 228 106 105 chr21 15264699 15265266 -19642304 + MLT1E LTR MaLR 1 593 0 2564 153 41 56 chr21 15265519 15266074 -19641496 - L1MA4 LINE L1 -29 6271 5725 198 160 0 0 chr21 15267992 15268042 -19639528 + (CA)n Simple_repeat Simple_repeat 1 50 0 209 238 12 95 chr21 15268552 15268636 -19638934 - MIR3 SINE MIR -5 203 127 216 143 0 0 chr21 15268770 15268812 -19638758 + (TG)n Simple_repeat Simple_repeat 1 42 0 308 318 87 0 chr21 15269225 15269351 -19638219 + MIR3 SINE MIR 67 203 -5 260 247 12 0 chr21 15269606 15269691 -19637879 + (TATATG)n Simple_repeat Simple_repeat 3 88 0 270 134 61 49 chr21 15269700 15269782 -19637788 + (CATATA)n Simple_repeat Simple_repeat 4 86 0 239 206 82 14 chr21 15269784 15269857 -19637713 + L1MC4 LINE L1 6621 6698 -1344 292 169 0 22 chr21 15269863 15269952 -19637618 + (TA)n Simple_repeat Simple_repeat 2 88 0 23 0 0 0 chr21 15270022 15270045 -19637525 + AT_rich Low_complexity Low_complexity 1 23 0 1006 146 12 0 chr21 15270142 15270313 -19637257 + MER4B-int LTR ERV1 3780 3952 -2806 1545 175 11 18 chr21 15270633 15270918 -19636652 + MER4B-int LTR ERV1 4391 4673 -2085 2677 213 45 44 chr21 15270960 15271851 -19635719 + MER4B-int LTR ERV1 930 4711 -2047 4113 131 3 2 chr21 15272178 15272812 -19634758 + MER41B LTR ERV1 1 635 0 2033 158 0 0 chr21 15273368 15273678 -19633892 + AluSx SINE Alu 1 310 -2 261 281 62 0 chr21 15273957 15274021 -19633549 - L2 LINE L2 -37 3235 3168 240 35 0 0 chr21 15274874 15274903 -19632667 - MLT2E LTR ERVL -562 66 38 21 0 0 0 chr21 15275174 15275195 -19632375 + AT_rich Low_complexity Low_complexity 1 21 0 378 0 0 0 chr21 15276345 15276387 -19631183 + (TG)n Simple_repeat Simple_repeat 2 43 0 1321 221 70 19 chr21 15277269 15277640 -19629930 - MLT1B LTR MaLR 0 390 1 420 20 0 0 chr21 15277752 15277801 -19629769 + (CA)n Simple_repeat Simple_repeat 2 50 0 206 319 0 14 chr21 15278204 15278273 -19629297 + MIR3 SINE MIR 138 205 -3 26 50 0 0 chr21 15279746 15279786 -19627784 + AT_rich Low_complexity Low_complexity 1 40 0 1028 144 5 75 chr21 15279999 15280187 -19627383 - AluJo SINE Alu -17 295 121 203 152 0 0 chr21 15280327 15280360 -19627210 + T-rich Low_complexity Low_complexity 2 34 0 1275 164 8 30 chr21 15280616 15280884 -19626686 + LTR1 LTR ERV1 27 288 -497 8036 189 10 18 chr21 15281000 15282886 -19624684 - L1P3 LINE L1 -3438 3023 1156 1374 121 0 0 chr21 15282895 15283093 -19624477 - L1P3 LINE L1 -5673 202 5 2864 66 23 8 chr21 15283209 15283604 -19623966 + MLT2A1 LTR ERVL 3 403 -41 729 170 0 0 chr21 15283607 15283748 -19623822 + (CATATA)n Simple_repeat Simple_repeat 6 146 0 309 221 0 63 chr21 15283756 15283851 -19623719 + L1MC4 LINE L1 6614 6702 -1340 262 0 53 0 chr21 15283899 15283937 -19623633 + (TA)n Simple_repeat Simple_repeat 2 41 0 796 227 12 25 chr21 15283937 15284179 -19623391 + L1P3 LINE L1 1230 1468 -4993 308 49 0 0 chr21 15284188 15284229 -19623341 - MLT2A2 LTR ERVL 0 453 413 40262 83 12 6 chr21 15284258 15289876 -19617694 + HERVL-A1 LTR ERVL 1 5654 0 2462 132 20 2 chr21 15289876 15290269 -19617301 + MLT2A1 LTR ERVL 1 400 -44 311 210 0 12 chr21 15290271 15290352 -19617218 + (TA)n Simple_repeat Simple_repeat 2 81 0 361 105 0 0 chr21 15290353 15290410 -19617160 + MLT2A1 LTR ERVL 397 453 0 462 290 67 5 chr21 15290849 15291042 -19616528 - HAL1 LINE L1 -709 1798 1594 249 314 124 0 chr21 15291230 15291351 -19616219 - MLT1I LTR MaLR -191 218 83 355 311 30 30 chr21 15291729 15291864 -19615706 - L1MEd LINE L1 -4862 1257 1123 2186 63 3 14 chr21 15292720 15293035 -19614535 + AluY SINE Alu 1 312 0 11333 218 27 13 chr21 15294179 15299455 -19608115 + L1PA16 LINE L1 1390 6865 -4 1470 226 42 21 chr21 15300044 15300425 -19607145 + MLT1D LTR MaLR 113 501 -4 183 200 0 80 chr21 15300568 15300618 -19606952 + MIR SINE MIR 144 189 -73 554 184 6 0 chr21 15300675 15300854 -19606716 + (TA)n Simple_repeat Simple_repeat 1 180 0 213 183 17 17 chr21 15300854 15300914 -19606656 + (TAAA)n Simple_repeat Simple_repeat 3 62 0 509 264 52 0 chr21 15300963 15301118 -19606452 - LTR33A LTR ERVL -60 463 301 3325 18 0 0 chr21 15301355 15301741 -19605829 + L1PA2 LINE L1 5770 6155 0 225 119 0 0 chr21 15301765 15301807 -19605763 + (A)n Simple_repeat Simple_repeat 1 42 0 976 145 45 0 chr21 15301833 15302012 -19605558 + L1MB3 LINE L1 5994 6180 -3 246 283 75 25 chr21 15302073 15302193 -19605377 + MIR SINE MIR 137 262 0 204 301 88 103 chr21 15302789 15302949 -19604621 + L2 LINE L2 2215 2376 -938 537 97 0 0 chr21 15302949 15303021 -19604549 + L1PA10 LINE L1 6087 6158 -10 204 301 88 103 chr21 15303021 15303328 -19604242 + L2 LINE L2 2376 2675 -639 1006 179 114 7 chr21 15303737 15304010 -19603560 + MER33 DNA MER1_type 1 302 -22 2343 93 0 0 chr21 15304245 15304545 -19603025 - AluSq SINE Alu -9 304 5 715 161 0 0 chr21 15304944 15305062 -19602508 + AluSg/x SINE Alu 190 307 -2 1170 254 71 31 chr21 15305062 15305316 -19602254 + HAL1 LINE L1 1061 1336 -1171 1698 199 0 7 chr21 15305316 15305618 -19601952 + AluJo SINE Alu 1 300 -12 1170 254 71 31 chr21 15305618 15305745 -19601825 + HAL1 LINE L1 1336 1457 -1050 318 281 108 29 chr21 15305750 15306028 -19601542 + HAL1 LINE L1 1471 1770 -737 1406 173 16 50 chr21 15306090 15306408 -19601162 - MLT2B1 LTR ERVL -213 307 1 200 270 100 50 chr21 15307029 15307129 -19600441 - MIR SINE MIR -79 183 79 268 315 88 54 chr21 15307158 15307510 -19600060 - MARNA DNA Mariner -72 514 151 237 65 0 0 chr21 15307582 15307613 -19599957 + (TC)n Simple_repeat Simple_repeat 2 32 0 2977 89 33 5 chr21 15308174 15308603 -19598967 + MLT2A1 LTR ERVL 4 444 0 607 204 7 28 chr21 15310448 15310590 -19596980 + MLT2D LTR ERVL 227 365 -49 222 91 0 0 chr21 15310591 15310624 -19596946 + (TC)n Simple_repeat Simple_repeat 1 33 0 261 167 0 0 chr21 15310624 15310678 -19596892 + (CA)n Simple_repeat Simple_repeat 1 54 0 189 277 123 0 chr21 15311060 15311125 -19596445 - L2 LINE L2 -10 3262 3190 618 335 72 62 chr21 15311481 15311576 -19595994 - L2 LINE L2 -476 2838 2745 2318 95 0 7 chr21 15311576 15311881 -19595689 - AluY SINE Alu -8 303 1 618 335 72 62 chr21 15311881 15312562 -19595008 - L2 LINE L2 -569 2745 2054 292 227 106 0 chr21 15312622 15312688 -19594882 - MER2 DNA MER2_type 0 344 272 486 75 21 11 chr21 15312735 15312829 -19594741 + (TA)n Simple_repeat Simple_repeat 2 96 0 2269 116 0 16 chr21 15312829 15313139 -19594431 - AluSx SINE Alu -7 305 1 979 158 0 0 chr21 15313182 15313346 -19594224 - MER2 DNA MER2_type -171 173 10 34 0 0 0 chr21 15314306 15314340 -19593230 + AT_rich Low_complexity Low_complexity 1 34 0 590 215 25 0 chr21 15314341 15314462 -19593108 - FRAM SINE Alu -12 164 41 197 315 68 103 chr21 15314939 15315085 -19592485 + MIR SINE MIR 7 147 -115 537 289 72 0 chr21 15315661 15315827 -19591743 + MER45A DNA AcHobo 1 178 0 598 173 46 122 chr21 15315886 15315979 -19591591 + MER20 DNA MER1_type 37 136 -83 2129 148 0 0 chr21 15315979 15316277 -19591293 + AluSx SINE Alu 1 298 -14 598 173 46 122 chr21 15316277 15316330 -19591240 + MER20 DNA MER1_type 136 167 -52 2504 63 7 0 chr21 15316330 15316632 -19590938 - AluY SINE Alu -7 304 1 598 173 46 122 chr21 15316632 15316681 -19590889 + MER20 DNA MER1_type 167 218 -1 551 57 0 102 chr21 15318033 15318082 -19589488 + MADE1 DNA Mariner 2 40 -40 210 37 0 0 chr21 15318082 15318109 -19589461 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 551 57 0 102 chr21 15318109 15318147 -19589423 + MADE1 DNA Mariner 40 80 0 2224 96 0 3 chr21 15318345 15318636 -19588934 + AluSc SINE Alu 1 290 -19 1791 159 25 69 chr21 15318748 15319156 -19588414 + MLT1B LTR MaLR 1 390 0 2163 117 7 0 chr21 15319862 15320162 -19587408 - AluSq SINE Alu -11 302 1 789 130 9 139 chr21 15320685 15320901 -19586669 + MER53 DNA DNA 1 188 -1 502 175 10 0 chr21 15321600 15321703 -19585867 - MER58 DNA MER1_type -1 2419 2316 431 216 11 0 chr21 15321700 15321788 -19585782 - MER58 DNA MER1_type -241 100 12 234 269 15 0 chr21 15321846 15321913 -19585657 + MLT1J LTR MaLR 110 177 -334 2426 54 0 7 chr21 15322027 15322324 -19585246 + AluY SINE Alu 1 295 -16 46 54 0 0 chr21 15323082 15323156 -19584414 + AT_rich Low_complexity Low_complexity 1 74 0 532 349 14 19 chr21 15323851 15324060 -19583510 - HAL1 LINE L1 -2284 223 16 21 0 0 0 chr21 15324408 15324429 -19583141 + AT_rich Low_complexity Low_complexity 1 21 0 318 281 37 0 chr21 15325027 15325109 -19582461 - MER5A DNA MER1_type -60 129 45 2079 129 6 28 chr21 15325294 15325612 -19581958 + AluSx SINE Alu 1 311 -1 604 241 19 93 chr21 15326760 15326976 -19580594 - MIR SINE MIR -49 213 14 185 306 122 0 chr21 15327768 15327866 -19579704 - MIR SINE MIR -37 225 116 1517 151 54 8 chr21 15327973 15328788 -19578782 - L1MA9 LINE L1 -30 6282 5370 559 249 51 0 chr21 15329655 15329832 -19577738 - L1MEc LINE L1 -4878 1235 1050 230 237 0 17 chr21 15329904 15329963 -19577607 + CT-rich Low_complexity Low_complexity 2 59 0 2254 199 78 25 chr21 15330033 15330562 -19577008 - MER74A LTR ERVL 0 558 2 1936 148 10 0 chr21 15330568 15330865 -19576705 - AluSq SINE Alu -13 300 1 649 314 10 10 chr21 15330870 15331160 -19576410 - L1MEc LINE L1 -5503 893 604 313 231 74 66 chr21 15331490 15331611 -19575959 - L2 LINE L2 -24 3289 3168 1950 171 25 57 chr21 15332095 15332498 -19575072 - MLT1B LTR MaLR 0 390 1 2290 99 3 3 chr21 15333737 15334050 -19573520 + AluSp SINE Alu 1 313 0 610 310 62 34 chr21 15334140 15334498 -19573072 - L2 LINE L2 0 3313 2946 249 33 0 0 chr21 15334558 15334588 -19572982 + (TA)n Simple_repeat Simple_repeat 1 30 0 1447 270 56 18 chr21 15336907 15337303 -19570267 - LTR40a LTR ERVL -107 412 2 1113 103 7 0 chr21 15337997 15338143 -19569427 - AluSq/x SINE Alu -166 147 1 1015 213 6 0 chr21 15338148 15338331 -19569239 + Tigger5 DNA MER2_type 38 221 -2102 2976 131 16 14 chr21 15338335 15338823 -19568747 + Tigger5 DNA MER2_type 1835 2323 0 1073 181 36 29 chr21 15340285 15340561 -19567009 + L1MA8 LINE L1 6012 6289 -2 435 287 71 82 chr21 15340950 15341232 -19566338 - L2 LINE L2 0 3313 3035 26 50 0 0 chr21 15342568 15342608 -19564962 + AT_rich Low_complexity Low_complexity 1 40 0 808 249 44 0 chr21 15342904 15343085 -19564485 - MER5A DNA MER1_type 0 189 1 32 43 0 0 chr21 15344689 15344735 -19562835 + AT_rich Low_complexity Low_complexity 1 46 0 231 291 146 19 chr21 15344879 15344982 -19562588 + MIR SINE MIR 30 145 -63 223 246 49 0 chr21 15345035 15345096 -19562474 + MER91 DNA MER1_type 1 64 -76 282 204 0 0 chr21 15346483 15346537 -19561033 - MIR SINE MIR -123 139 86 2235 67 17 10 chr21 15347514 15347813 -19559757 - AluY SINE Alu -10 301 1 440 59 0 59 chr21 15349424 15349492 -19558078 + MADE1 DNA Mariner 17 80 0 225 132 0 0 chr21 15350959 15350997 -19556573 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1653 257 52 59 chr21 15351576 15352487 -19555083 - L1MC5 LINE L1 -370 7591 6688 192 349 16 0 chr21 15353461 15353524 -19554046 + L2 LINE L2 3209 3272 0 1236 215 66 64 chr21 15353690 15354146 -19553424 + LTR16A1 LTR ERVL 1 457 0 2252 128 31 6 chr21 15354329 15354681 -19552889 - THE1B LTR MaLR 0 364 4 9577 112 54 41 chr21 15354684 15356244 -19551326 - THE1B-int LTR MaLR 0 1580 1 2215 146 22 0 chr21 15356244 15356600 -19550970 - THE1B LTR MaLR 0 364 1 949 215 51 17 chr21 15357114 15357351 -19550219 - MLT1A1 LTR MaLR 0 365 121 1748 59 5 23 chr21 15358652 15358873 -19548697 - AluY SINE Alu -9 302 86 1011 223 42 5 chr21 15359578 15359793 -19547777 + MER58A DNA MER1_type 1 223 -1 207 100 0 0 chr21 15359896 15359926 -19547644 + (TC)n Simple_repeat Simple_repeat 1 30 0 58 82 0 0 chr21 15360269 15360404 -19547166 + AT_rich Low_complexity Low_complexity 1 135 0 26 82 0 0 chr21 15362753 15362814 -19544756 + AT_rich Low_complexity Low_complexity 1 61 0 24 32 0 0 chr21 15362908 15362939 -19544631 + AT_rich Low_complexity Low_complexity 1 31 0 467 301 87 35 chr21 15364025 15364198 -19543372 + MIR SINE MIR 75 256 -6 279 0 0 0 chr21 15365423 15365454 -19542116 + (GA)n Simple_repeat Simple_repeat 1 31 0 446 326 60 18 chr21 15365558 15365776 -19541794 + MIR SINE MIR 15 241 -21 1984 244 99 10 chr21 15367180 15367804 -19539766 + L1ME3A LINE L1 5488 6168 -2 2291 95 0 13 chr21 15367807 15368113 -19539457 + AluY SINE Alu 3 304 -7 22 35 0 0 chr21 15369032 15369061 -19538509 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr21 15369079 15369118 -19538452 + AT_rich Low_complexity Low_complexity 1 39 0 1000 47 78 0 chr21 15369285 15369414 -19538156 - MER85 DNA T2_type 0 139 1 310 308 55 27 chr21 15369953 15370099 -19537471 + L1ME4a LINE L1 5969 6118 -3 282 297 55 60 chr21 15370116 15370298 -19537272 + L2 LINE L2 3004 3184 -129 28 61 0 0 chr21 15370306 15370355 -19537215 + AT_rich Low_complexity Low_complexity 1 49 0 392 273 9 45 chr21 15370381 15370491 -19537079 + L2 LINE L2 3208 3313 0 227 256 22 22 chr21 15371124 15371214 -19536356 + A-rich Low_complexity Low_complexity 1 90 0 1577 131 30 0 chr21 15371798 15372066 -19535504 - L1MA5A LINE L1 -1 6296 6021 260 273 65 52 chr21 15372377 15372531 -19535039 - MLT1J2 LTR MaLR -274 176 21 2279 81 0 0 chr21 15372535 15372820 -19534750 - AluY SINE Alu -16 295 11 357 40 0 0 chr21 15372861 15372911 -19534659 + AluY SINE Alu 259 308 0 515 319 37 62 chr21 15372914 15373380 -19534190 - L2 LINE L2 -133 3180 2742 353 294 16 24 chr21 15373382 15373508 -19534062 - L2 LINE L2 -1051 2263 2139 31 44 0 0 chr21 15374391 15374436 -19533134 + AT_rich Low_complexity Low_complexity 1 45 0 292 345 65 7 chr21 15375818 15375957 -19531613 - MIR SINE MIR -37 225 79 180 0 0 0 chr21 15376204 15376224 -19531346 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr21 15376814 15376835 -19530735 + AT_rich Low_complexity Low_complexity 1 21 0 1980 92 0 15 chr21 15378131 15378404 -19529166 - AluY SINE Alu -8 303 35 1342 190 11 18 chr21 15378980 15379139 -19528431 - MER33 DNA MER1_type -2283 302 146 2313 146 11 11 chr21 15379139 15379333 -19528237 + THE1B LTR MaLR 1 197 -167 333 0 0 0 chr21 15379333 15379370 -19528200 + (TC)n Simple_repeat Simple_repeat 2 38 0 2313 146 11 11 chr21 15379370 15379539 -19528031 + THE1B LTR MaLR 196 364 0 1342 190 11 18 chr21 15379539 15379694 -19527876 - MER33 DNA MER1_type -2439 146 1 2478 127 6 3 chr21 15379822 15380185 -19527385 + THE1B LTR MaLR 1 364 0 1206 236 115 43 chr21 15381350 15381812 -19525758 - MLT1D LTR MaLR -7 498 4 204 40 0 0 chr21 15382953 15382978 -19524592 + (CA)n Simple_repeat Simple_repeat 2 26 0 572 275 77 5 chr21 15384519 15384726 -19522844 + MLT2C1 LTR ERVL 1 222 -175 593 69 30 10 chr21 15384934 15385035 -19522535 + (TCTA)n Simple_repeat Simple_repeat 3 105 0 676 254 21 49 chr21 15385111 15385418 -19522152 + MLT1-int LTR MaLR 2 398 -1171 925 264 11 51 chr21 15385432 15385525 -19522045 + MLT1E2 LTR MaLR 230 325 -301 1979 200 13 13 chr21 15385525 15385565 -19522005 - MLT1B LTR MaLR 0 390 351 2184 124 0 22 chr21 15385565 15385880 -19521690 + AluSq SINE Alu 1 308 -5 1979 200 13 13 chr21 15385880 15386229 -19521341 - MLT1B LTR MaLR -38 352 1 925 264 11 51 chr21 15386229 15386408 -19521162 + MLT1E2 LTR MaLR 325 491 -135 8243 115 44 7 chr21 15388149 15389388 -19518182 - HSMAR1 DNA Mariner -1 1286 1 1616 169 59 48 chr21 15389391 15389747 -19517823 - MLT1A1 LTR MaLR -3 362 3 192 77 0 0 chr21 15390252 15390278 -19517292 + (A)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr21 15390947 15390971 -19516599 + AT_rich Low_complexity Low_complexity 1 24 0 189 107 0 0 chr21 15391217 15391245 -19516325 + (A)n Simple_repeat Simple_repeat 1 28 0 21 89 0 0 chr21 15391948 15392004 -19515566 + AT_rich Low_complexity Low_complexity 1 56 0 603 217 0 23 chr21 15392111 15392240 -19515330 + MLT1A1 LTR MaLR 2 127 -301 252 0 0 0 chr21 15392433 15392461 -19515109 + (T)n Simple_repeat Simple_repeat 1 28 0 649 223 6 25 chr21 15392463 15392500 -19515070 + MLT1A1 LTR MaLR 212 248 -117 1895 130 0 7 chr21 15392500 15392770 -19514800 - AluSx SINE Alu -44 268 1 649 223 6 25 chr21 15392770 15392889 -19514681 + MLT1A1 LTR MaLR 248 365 0 388 58 2 38 chr21 15393779 15393839 -19513731 - L1M4 LINE L1 -562 5612 5554 992 129 20 0 chr21 15393839 15393986 -19513584 - L1P4 LINE L1 -582 5584 5435 1838 117 4 0 chr21 15393989 15394238 -19513332 - AluSg SINE Alu -15 295 46 2893 165 25 9 chr21 15394248 15394774 -19512796 + L1PA16 LINE L1 5617 6150 -16 1966 120 42 0 chr21 15394802 15395086 -19512484 - AluSx SINE Alu -10 302 7 812 142 65 0 chr21 15396560 15396715 -19510855 + L1PA13 LINE L1 5999 6163 0 315 250 53 0 chr21 15397285 15397361 -19510209 - L2 LINE L2 -9 3263 3184 29 28 0 0 chr21 15397719 15397755 -19509815 + AT_rich Low_complexity Low_complexity 1 36 0 2084 78 0 44 chr21 15398275 15398600 -19508970 + AluY SINE Alu 1 312 0 304 160 66 19 chr21 15398666 15398772 -19508798 + (TA)n Simple_repeat Simple_repeat 1 111 0 366 0 0 0 chr21 15399137 15399184 -19508386 + L1PA4 LINE L1 6109 6155 0 430 302 40 20 chr21 15399195 15399344 -19508226 + MIR SINE MIR 97 248 -14 24 32 0 0 chr21 15399773 15399804 -19507766 + AT_rich Low_complexity Low_complexity 1 31 0 599 315 58 17 chr21 15399888 15400129 -19507441 + L2 LINE L2 2667 2917 -397 2540 106 25 3 chr21 15400160 15400527 -19507043 + THE1C LTR MaLR 1 375 0 2086 128 0 3 chr21 15400666 15400964 -19506606 + AluSg SINE Alu 1 297 -13 318 26 0 0 chr21 15401389 15401428 -19506142 + (TG)n Simple_repeat Simple_repeat 1 39 0 2755 23 0 0 chr21 15402020 15402323 -19505247 + AluY SINE Alu 1 303 -8 189 0 0 0 chr21 15403306 15403327 -19504243 + (CAGGG)n Simple_repeat Simple_repeat 2 22 0 1369 171 0 0 chr21 15404019 15404236 -19503334 - AluJb SINE Alu -9 303 87 409 288 54 27 chr21 15404838 15405022 -19502548 - MIR SINE MIR -72 190 2 1655 107 96 48 chr21 15405728 15406044 -19501526 - AluY SINE Alu 0 329 1 28 61 0 0 chr21 15406418 15406467 -19501103 + AT_rich Low_complexity Low_complexity 1 49 0 396 292 47 18 chr21 15406732 15406903 -19500667 - L1ME LINE L1 -347 5774 5599 7742 23 0 0 chr21 15406978 15408140 -19499430 - L1PA4 LINE L1 0 6155 4994 185 333 69 0 chr21 15408880 15408952 -19498618 + MIR SINE MIR 71 147 -115 3362 217 81 30 chr21 15409071 15410083 -19497487 - Charlie1 DNA MER1_type -38 2723 1660 224 200 240 0 chr21 15410362 15410437 -19497133 + MIR SINE MIR 158 250 -12 198 71 0 0 chr21 15410849 15410877 -19496693 + (T)n Simple_repeat Simple_repeat 1 28 0 249 271 0 0 chr21 15411108 15411167 -19496403 + (CAA)n Simple_repeat Simple_repeat 2 60 0 225 0 0 0 chr21 15411897 15411922 -19495648 + (T)n Simple_repeat Simple_repeat 1 25 0 292 196 0 0 chr21 15413206 15413262 -19494308 - MLT2B1 LTR ERVL 0 453 398 223 186 72 0 chr21 15413299 15413396 -19494174 + (TA)n Simple_repeat Simple_repeat 2 105 0 70 41 0 0 chr21 15413396 15413494 -19494076 + AT_rich Low_complexity Low_complexity 1 98 0 441 164 26 13 chr21 15413610 15413762 -19493808 + (TA)n Simple_repeat Simple_repeat 2 155 0 1851 184 14 14 chr21 15413766 15414117 -19493453 - MLT2B1 LTR ERVL -118 397 1 1182 171 9 42 chr21 15414238 15414454 -19493116 - AluJb SINE Alu -26 286 78 205 234 117 13 chr21 15414474 15414551 -19493019 + MIR SINE MIR 178 262 0 195 343 57 0 chr21 15414556 15414626 -19492944 + L2 LINE L2 3183 3256 -16 1869 117 65 0 chr21 15414824 15415114 -19492456 + AluSx SINE Alu 3 311 -1 192 338 88 0 chr21 15415755 15415835 -19491735 + MIR SINE MIR 59 145 -117 1568 170 158 13 chr21 15416067 15416384 -19491186 - MLT1A2 LTR MaLR 0 374 12 21 0 0 0 chr21 15416862 15416883 -19490687 + AT_rich Low_complexity Low_complexity 1 21 0 2331 102 0 0 chr21 15417578 15417882 -19489688 + AluSc SINE Alu 1 304 -5 488 56 14 0 chr21 15418162 15418234 -19489336 + (TG)n Simple_repeat Simple_repeat 2 74 0 628 264 47 28 chr21 15418759 15418971 -19488599 - MIR SINE MIR -44 218 3 686 264 67 60 chr21 15419122 15419437 -19488133 + L1M4 LINE L1 3316 3632 -2514 2305 95 0 0 chr21 15419441 15419736 -19487834 - AluSc SINE Alu -14 295 1 359 305 17 0 chr21 15419740 15419858 -19487712 + L1M4 LINE L1 3623 3742 -2404 491 278 72 26 chr21 15419977 15420171 -19487399 + L1M4 LINE L1 3925 4127 -2019 307 249 119 60 chr21 15420352 15420637 -19486933 + L1M4 LINE L1 4395 4696 -1450 341 344 15 0 chr21 15420653 15420784 -19486786 + L1M4 LINE L1 4733 4865 -1281 2560 42 0 13 chr21 15420784 15421092 -19486478 - AluY SINE Alu -7 304 1 909 279 58 0 chr21 15421285 15421525 -19486045 - MER69 DNA AcHobo -877 349 96 346 302 10 10 chr21 15422262 15422358 -19485212 + MIR SINE MIR 40 135 -73 21 36 0 0 chr21 15423904 15423932 -19483638 + AT_rich Low_complexity Low_complexity 1 28 0 378 261 34 0 chr21 15424419 15424507 -19483063 + L1M4 LINE L1 2673 2763 -3383 300 226 15 73 chr21 15424663 15424720 -19482850 + L1M4 LINE L1 2900 2959 -3187 1233 240 62 39 chr21 15424720 15425107 -19482463 - MSTD LTR MaLR 0 396 1 300 226 15 73 chr21 15425107 15425186 -19482384 + L1M4 LINE L1 2959 3028 -3118 5902 114 9 9 chr21 15425195 15425385 -19482185 + L1PA13 LINE L1 4609 4798 -1365 2198 131 0 0 chr21 15425385 15425697 -19481873 + AluSx SINE Alu 1 312 0 5902 114 9 9 chr21 15425697 15427089 -19480481 + L1PA13 LINE L1 4797 6159 -4 1580 220 58 43 chr21 15427190 15427750 -19479820 + L1M4 LINE L1 4360 4931 -1215 1860 207 8 10 chr21 15427750 15428141 -19479429 - MLT1B LTR MaLR 0 390 1 1580 220 58 43 chr21 15428141 15428161 -19479409 + L1M4 LINE L1 4931 4949 -1197 1987 234 22 10 chr21 15428150 15428659 -19478911 + L1MB7 LINE L1 5660 6174 -10 919 266 16 6 chr21 15428667 15428983 -19478587 + L1M4 LINE L1 4984 5302 -844 2144 126 0 3 chr21 15429007 15429317 -19478253 - AluSx SINE Alu -3 309 1 201 197 42 0 chr21 15429711 15429782 -19477788 + CT-rich Low_complexity Low_complexity 3 76 0 30 0 0 0 chr21 15429899 15429929 -19477641 + AT_rich Low_complexity Low_complexity 1 30 0 1489 107 19 0 chr21 15429939 15430144 -19477426 - AluSx SINE Alu -94 218 10 246 271 0 29 chr21 15430258 15430328 -19477242 - MLT1B LTR MaLR -322 68 1 1828 177 77 24 chr21 15430782 15430950 -19476620 + MSTA LTR MaLR 1 159 -269 4459 52 2 5 chr21 15430950 15431511 -19476059 + L1PA8 LINE L1 5614 6172 0 1828 177 77 24 chr21 15431511 15431721 -19475849 + MSTA LTR MaLR 159 399 -29 296 366 53 45 chr21 15432242 15432747 -19474823 - L2 LINE L2 -351 2963 2455 24 0 0 0 chr21 15432756 15432780 -19474790 + AT_rich Low_complexity Low_complexity 1 24 0 317 292 135 11 chr21 15433098 15433187 -19474383 + L2 LINE L2 3148 3247 -25 264 59 0 0 chr21 15433196 15433230 -19474340 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 23 0 0 0 chr21 15434903 15434926 -19472644 + AT_rich Low_complexity Low_complexity 1 23 0 485 281 8 0 chr21 15435274 15435395 -19472175 - MLT1L LTR MaLR -339 276 155 428 255 65 69 chr21 15435625 15435841 -19471729 + MER58C DNA MER1_type 1 215 0 185 306 0 16 chr21 15436285 15436347 -19471223 + MIR SINE MIR 94 154 -108 3576 43 2 2 chr21 15438526 15438969 -19468601 - L1PA7 LINE L1 -2 6152 5710 1979 122 21 0 chr21 15440344 15440630 -19466940 + AluSx SINE Alu 5 296 -16 454 121 46 17 chr21 15440698 15440872 -19466698 + (TA)n Simple_repeat Simple_repeat 2 180 0 1419 180 16 33 chr21 15441406 15441712 -19465858 + L1MC3 LINE L1 7479 7779 -6 24 0 0 0 chr21 15441769 15441793 -19465777 + AT_rich Low_complexity Low_complexity 1 24 0 1644 139 66 46 chr21 15442758 15443124 -19464446 + THE1C LTR MaLR 3 375 0 590 353 94 47 chr21 15449138 15450133 -19457437 + L2 LINE L2 1634 2675 -639 434 275 104 28 chr21 15450190 15450372 -19457198 - MER102b DNA MER1_type -1 340 145 220 200 0 0 chr21 15450484 15450524 -19457046 + L2 LINE L2 3221 3260 -12 830 222 0 0 chr21 15450633 15450795 -19456775 - FRAM SINE Alu -4 162 1 183 465 20 5 chr21 15450801 15451003 -19456567 - L2 LINE L2 -252 3020 2816 594 179 9 9 chr21 15451433 15451539 -19456031 + MER5A DNA MER1_type 4 109 -80 2060 135 10 10 chr21 15453232 15453544 -19454026 + AluSx SINE Alu 1 312 0 336 102 0 0 chr21 15453662 15453711 -19453859 + (T)n Simple_repeat Simple_repeat 1 49 0 1740 129 0 0 chr21 15453711 15453959 -19453611 - AluSq SINE Alu -65 248 1 334 284 0 0 chr21 15454078 15454173 -19453397 - L1ME LINE L1 -5041 1041 947 323 282 67 96 chr21 15454333 15454677 -19452893 - L1ME LINE L1 -5182 888 555 403 141 0 0 chr21 15458147 15458211 -19449359 - MER53 DNA DNA -125 64 1 195 0 56 28 chr21 15458330 15458366 -19449204 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 743 153 88 6 chr21 15460261 15460431 -19447139 - MER53 DNA DNA -3 186 3 301 248 133 76 chr21 15460624 15460729 -19446841 - MIR SINE MIR -121 141 31 308 265 49 22 chr21 15461471 15461612 -19445958 - MIR SINE MIR -53 155 16 191 35 0 35 chr21 15461824 15461853 -19445717 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 306 47 0 0 chr21 15463362 15463405 -19444165 + MADE1 DNA Mariner 1 43 -37 291 28 0 0 chr21 15464580 15464616 -19442954 + (TG)n Simple_repeat Simple_repeat 1 36 0 486 326 31 36 chr21 15465699 15465892 -19441678 + MIR SINE MIR 2 193 -69 1212 206 15 101 chr21 15466259 15466666 -19440904 - MLT1A2 LTR MaLR -2 372 1 300 330 9 19 chr21 15468099 15468205 -19439365 - MER5A DNA MER1_type -45 144 40 2615 290 46 47 chr21 15468251 15469245 -19438325 + L2 LINE L2 1713 2705 -609 611 156 126 7 chr21 15469263 15469398 -19438172 + MLT1A1 LTR MaLR 2 152 -213 733 278 61 23 chr21 15469513 15469776 -19437794 + L2 LINE L2 2705 2977 -337 581 276 77 27 chr21 15469802 15470063 -19437507 + L2 LINE L2 3040 3313 0 28 29 0 0 chr21 15470542 15470577 -19436993 + AT_rich Low_complexity Low_complexity 1 35 0 35 54 0 0 chr21 15472581 15472637 -19434933 + AT_rich Low_complexity Low_complexity 1 56 0 2335 128 28 19 chr21 15472690 15473049 -19434521 - THE1B LTR MaLR -2 362 1 2357 210 14 51 chr21 15473783 15474350 -19433220 + MLT2B3 LTR ERVL 3 548 -6 36 53 0 0 chr21 15475979 15476036 -19431534 + AT_rich Low_complexity Low_complexity 1 57 0 811 149 75 6 chr21 15476612 15476773 -19430797 - L1MB1 LINE L1 0 6168 5997 822 206 24 6 chr21 15477115 15477280 -19430290 - FAM SINE Alu -7 168 1 183 129 0 0 chr21 15477587 15477618 -19429952 + (CA)n Simple_repeat Simple_repeat 2 32 0 433 234 105 8 chr21 15477805 15477929 -19429641 + MIR SINE MIR 120 255 -7 3501 212 8 19 chr21 15478024 15478761 -19428809 + MER44D DNA MER2_type 5 605 0 334 212 0 15 chr21 15479339 15479405 -19428165 + Tigger2 DNA MER2_type 1 65 -2653 1366 120 40 32 chr21 15479400 15479650 -19427920 + Tigger2 DNA MER2_type 2273 2524 -194 284 350 50 8 chr21 15480172 15480292 -19427278 + L2 LINE L2 3138 3262 -10 2364 72 0 3 chr21 15480840 15481146 -19426424 + AluY SINE Alu 1 305 -6 1857 151 0 26 chr21 15481478 15481789 -19425781 + AluSx SINE Alu 1 303 -9 23 54 0 0 chr21 15482167 15482204 -19425366 + AT_rich Low_complexity Low_complexity 1 37 0 231 114 0 0 chr21 15482517 15482552 -19425018 + (A)n Simple_repeat Simple_repeat 1 35 0 290 289 116 53 chr21 15486252 15486477 -19421093 - L1M2 LINE L1 -718 5579 5341 257 263 59 46 chr21 15486871 15487023 -19420547 + L1M4 LINE L1 4793 4946 -1200 21 57 0 0 chr21 15487137 15487172 -19420398 + AT_rich Low_complexity Low_complexity 1 35 0 352 329 90 0 chr21 15487194 15487361 -19420209 - L1M2 LINE L1 -1809 4337 4156 353 268 89 0 chr21 15487566 15487678 -19419892 - MIR SINE MIR -139 123 2 213 241 132 36 chr21 15491562 15491645 -19415925 + MIR SINE MIR 57 147 -61 684 225 72 39 chr21 15491774 15492179 -19415391 + MLT1D LTR MaLR 9 435 -32 387 0 0 0 chr21 15492194 15492237 -19415333 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 253 408 56 0 chr21 15493516 15493641 -19413929 - L2 LINE L2 -19 3253 3122 202 289 0 0 chr21 15494776 15494821 -19412749 + (CA)n Simple_repeat Simple_repeat 1 45 0 279 382 74 33 chr21 15495917 15496075 -19411495 - L2 LINE L2 -660 2654 2504 1701 152 19 48 chr21 15496075 15496391 -19411179 - AluJb SINE Alu -5 307 1 279 382 74 33 chr21 15496391 15496651 -19410919 - L2 LINE L2 -810 2504 2219 246 401 53 9 chr21 15497563 15497790 -19409780 - L2 LINE L2 -2126 1188 952 234 105 0 0 chr21 15498092 15498130 -19409440 + (GA)n Simple_repeat Simple_repeat 2 39 0 3013 165 12 8 chr21 15498441 15498951 -19408619 - MER41E LTR ERV1 0 512 1 372 310 69 17 chr21 15499042 15499216 -19408354 + L3 LINE CR1 1196 1378 -199 244 317 0 0 chr21 15499317 15499377 -19408193 + MER5A DNA MER1_type 37 96 -93 210 299 26 13 chr21 15499430 15499507 -19408063 + L3 LINE CR1 1494 1571 -6 1651 152 54 130 chr21 15501311 15501772 -19405798 - MSTA LTR MaLR -2 426 1 286 348 152 11 chr21 15502682 15502860 -19404710 - MIR SINE MIR -12 250 48 480 301 60 50 chr21 15504091 15504393 -19403177 - L2 LINE L2 -68 3245 2941 220 220 0 34 chr21 15504498 15504557 -19403013 + (CCA)n Simple_repeat Simple_repeat 1 57 0 21 36 0 0 chr21 15504808 15504836 -19402734 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 15505511 15505533 -19402037 + AT_rich Low_complexity Low_complexity 1 22 0 35 24 0 0 chr21 15505760 15505802 -19401768 + AT_rich Low_complexity Low_complexity 1 42 0 233 172 16 0 chr21 15508342 15508406 -19399164 + GA-rich Low_complexity Low_complexity 1 65 0 224 149 21 0 chr21 15508428 15508475 -19399095 + GA-rich Low_complexity Low_complexity 1 48 0 279 0 0 0 chr21 15508959 15508990 -19398580 + (TG)n Simple_repeat Simple_repeat 2 32 0 212 197 28 42 chr21 15509229 15509300 -19398270 + CT-rich Low_complexity Low_complexity 6 75 0 2130 104 7 17 chr21 15509641 15509939 -19397631 - AluSx SINE Alu -17 295 1 1919 191 8 3 chr21 15510134 15510495 -19397075 - MLT1A1 LTR MaLR -2 363 1 23 0 0 0 chr21 15510612 15510635 -19396935 + AT_rich Low_complexity Low_complexity 1 23 0 677 244 64 17 chr21 15510721 15510955 -19396615 - L1MC4a LINE L1 -287 7521 7277 817 250 5 18 chr21 15510967 15511191 -19396379 + L1MC4a LINE L1 7491 7711 -97 409 17 35 0 chr21 15511288 15511346 -19396224 + (TTA)n Simple_repeat Simple_repeat 2 61 0 2085 84 0 14 chr21 15511348 15511632 -19395938 - AluY SINE Alu -31 280 1 1540 327 64 44 chr21 15511867 15512926 -19394644 - L1MEd LINE L1 -4862 1257 246 319 237 31 0 chr21 15513077 15513174 -19394396 + (TA)n Simple_repeat Simple_repeat 1 100 0 235 0 0 54 chr21 15513878 15513915 -19393655 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 1084 290 40 40 chr21 15514530 15514607 -19392963 - MLT1E2 LTR MaLR -4 622 546 2251 68 41 3 chr21 15514607 15514901 -19392669 + AluY SINE Alu 3 307 -4 1084 290 40 40 chr21 15514901 15515227 -19392343 - MLT1E2 LTR MaLR -79 547 219 476 285 89 30 chr21 15515509 15515744 -19391826 - L1MC/D LINE L1 -2096 5712 5464 284 312 95 85 chr21 15516089 15516512 -19391058 + L2 LINE L2 2887 3313 0 2120 126 7 0 chr21 15517105 15517406 -19390164 - AluSx SINE Alu -9 303 1 319 175 10 21 chr21 15519044 15519116 -19388454 + GA-rich Low_complexity Low_complexity 3 98 0 2638 77 40 6 chr21 15519492 15519844 -19387726 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr21 15520662 15520683 -19386887 + AT_rich Low_complexity Low_complexity 1 21 0 416 357 80 13 chr21 15523228 15523452 -19384118 + L2 LINE L2 2652 2890 -424 837 265 28 35 chr21 15524565 15524852 -19382718 + L1ME3A LINE L1 5834 6118 -52 1215 239 13 45 chr21 15525085 15525395 -19382175 - AluJo SINE Alu -2 300 1 2273 122 43 8 chr21 15525421 15525773 -19381797 - THE1B LTR MaLR 0 364 1 754 333 61 10 chr21 15526346 15526640 -19380930 + LTR16A LTR ERVL 113 421 -29 2022 144 16 31 chr21 15526641 15527022 -19380548 - THE1C LTR MaLR 0 375 1 1767 240 50 34 chr21 15527606 15528011 -19379559 - L1MDa LINE L1 -4482 2058 1638 2236 123 28 19 chr21 15528011 15528370 -19379200 + THE1B LTR MaLR 1 362 -2 1767 240 50 34 chr21 15528370 15528559 -19379011 - L1MDa LINE L1 -4902 1638 1454 22 35 0 0 chr21 15528559 15528588 -19378982 + AT_rich Low_complexity Low_complexity 1 29 0 1094 171 22 0 chr21 15528611 15528792 -19378778 - AluJb SINE Alu -118 194 10 1016 245 67 36 chr21 15528863 15529437 -19378133 - L1MDa LINE L1 -5159 1384 790 774 256 86 53 chr21 15529995 15530390 -19377180 - L1MDa LINE L1 -6071 469 62 1993 157 3 0 chr21 15531831 15532137 -19375433 - AluSx SINE Alu -2 310 4 382 279 66 22 chr21 15533068 15533251 -19374319 - MER95 LTR ERV 0 431 241 2196 63 87 0 chr21 15533825 15534168 -19373402 + AluY SINE Alu 1 368 0 518 266 25 29 chr21 15534431 15534728 -19372842 - MER31-int LTR ERV1 -250 5895 3840 317 195 24 24 chr21 15534721 15534803 -19372767 - MER31-int LTR ERV1 -546 4390 4309 840 192 76 0 chr21 15534804 15534976 -19372594 + MLT1A1 LTR MaLR 181 365 0 268 269 109 17 chr21 15535304 15535423 -19372147 + MLT1J2 LTR MaLR 286 415 -35 23 33 0 0 chr21 15536175 15536205 -19371365 + AT_rich Low_complexity Low_complexity 1 30 0 2163 130 7 0 chr21 15536936 15537244 -19370326 + AluSg SINE Alu 1 310 0 481 162 181 0 chr21 15537428 15537533 -19370037 + MER63 DNA MER1_type 2 751 -311 1230 20 13 0 chr21 15539764 15539913 -19367657 - L1PA4 LINE L1 -2 6153 6003 12281 241 34 32 chr21 15540969 15542166 -19365404 - L1PB4 LINE L1 -1 6858 5665 2448 120 14 6 chr21 15542166 15542525 -19365045 + THE1B LTR MaLR 1 362 -2 12281 241 34 32 chr21 15542525 15544023 -19363547 - L1PB4 LINE L1 -1194 5665 4172 180 0 0 0 chr21 15544023 15544043 -19363527 + (TTG)n Simple_repeat Simple_repeat 1 20 0 12281 241 34 32 chr21 15544043 15545339 -19362231 - L1PB4 LINE L1 -2687 4172 2881 218 81 27 0 chr21 15545339 15545376 -19362194 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 12281 241 34 32 chr21 15545376 15547973 -19359597 - L1PB4 LINE L1 -3978 2881 716 23922 77 12 4 chr21 15547973 15551445 -19356125 - HERVL-A1 LTR ERVL -2085 3569 1 2985 79 44 7 chr21 15551445 15551873 -19355697 - MLT2A1 LTR ERVL 0 444 1 233 30 0 0 chr21 15552194 15552227 -19355343 - L1ME4a LINE L1 -12 6109 6077 447 42 28 14 chr21 15552709 15552780 -19354790 + (TCTA)n Simple_repeat Simple_repeat 3 74 0 23 68 0 0 chr21 15553564 15553608 -19353962 + AT_rich Low_complexity Low_complexity 1 44 0 345 197 0 0 chr21 15553976 15554047 -19353523 + (TA)n Simple_repeat Simple_repeat 2 72 0 2227 111 0 0 chr21 15555164 15555452 -19352118 - AluSc SINE Alu -21 288 1 23 0 0 0 chr21 15555500 15555523 -19352047 + AT_rich Low_complexity Low_complexity 1 23 0 879 233 47 11 chr21 15555943 15556218 -19351352 - MER33 DNA MER1_type -35 289 5 222 406 56 21 chr21 15556653 15556939 -19350631 + L3 LINE CR1 1281 1576 -1 574 168 11 0 chr21 15558722 15558817 -19348753 - MLT1A1 LTR MaLR 0 365 270 646 123 9 19 chr21 15558816 15558922 -19348648 - MLT1A1 LTR MaLR -260 105 1 867 168 116 81 chr21 15558922 15559206 -19348364 + MLT1B LTR MaLR 51 344 -46 2424 65 10 3 chr21 15561541 15561848 -19345722 - AluY SINE Alu -2 309 1 224 123 18 35 chr21 15562044 15562101 -19345469 + (TTGTG)n Simple_repeat Simple_repeat 4 59 0 186 43 0 0 chr21 15562205 15562228 -19345342 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 204 67 0 0 chr21 15562350 15562380 -19345190 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1481 214 14 0 chr21 15563915 15564200 -19343370 + AluJo SINE Alu 3 291 -21 4334 204 14 5 chr21 15564737 15565697 -19341873 + L1PB1 LINE L1 2142 3109 -3037 1965 128 6 22 chr21 15565714 15565978 -19341592 - THE1B LTR MaLR -57 307 47 535 100 0 0 chr21 15565978 15566058 -19341512 + MADE1 DNA Mariner 1 80 0 1965 128 6 22 chr21 15566058 15566105 -19341465 - THE1B LTR MaLR -317 47 1 4199 226 3 7 chr21 15566108 15567063 -19340507 + L1PB1 LINE L1 3238 4188 -1958 680 107 0 0 chr21 15567063 15567166 -19340404 + AluY SINE Alu 199 301 -10 5181 181 14 27 chr21 15567166 15568760 -19338810 + L1PB1 LINE L1 4192 5805 -406 228 67 0 0 chr21 15568760 15568790 -19338780 + (TA)n Simple_repeat Simple_repeat 1 30 0 5181 181 14 27 chr21 15568790 15569192 -19338378 + L1PB1 LINE L1 5805 6211 0 27 29 0 0 chr21 15569255 15569289 -19338281 + AT_rich Low_complexity Low_complexity 1 34 0 2233 106 0 3 chr21 15569360 15569671 -19337899 + AluSq SINE Alu 1 310 -3 25 65 0 0 chr21 15569977 15570023 -19337547 + AT_rich Low_complexity Low_complexity 1 46 0 1428 119 14 5 chr21 15570023 15570242 -19337328 - AluSq SINE Alu -15 298 78 533 43 0 0 chr21 15570272 15570341 -19337229 - AluY SINE Alu -230 80 12 1351 127 0 5 chr21 15570341 15570546 -19337024 + AluY SINE Alu 78 281 -30 3606 169 22 26 chr21 15572013 15572730 -19334840 + L1MC1 LINE L1 5618 6331 -2 23 33 0 0 chr21 15572804 15572834 -19334736 + AT_rich Low_complexity Low_complexity 1 30 0 253 316 132 40 chr21 15573150 15573302 -19334268 - MIR SINE MIR -13 249 84 294 265 60 0 chr21 15573556 15573639 -19333931 + MIR SINE MIR 97 184 -78 2386 28 0 7 chr21 15574034 15574373 -19333197 - AluY SINE Alu 0 338 2 23 0 0 0 chr21 15574379 15574402 -19333168 + AT_rich Low_complexity Low_complexity 1 23 0 483 312 47 21 chr21 15574520 15574712 -19332858 - MIR SINE MIR -65 197 1 22 35 0 0 chr21 15575513 15575542 -19332028 + AT_rich Low_complexity Low_complexity 1 29 0 2008 122 0 10 chr21 15575549 15575845 -19331725 + AluSg SINE Alu 1 293 -17 43 40 0 13 chr21 15576191 15576222 -19331348 + AT_rich Low_complexity Low_complexity 1 31 -43 1803 160 54 11 chr21 15576222 15576572 -19330998 + MER47A DNA MER2_type 1 365 -1 43 40 0 13 chr21 15576572 15576615 -19330955 + AT_rich Low_complexity Low_complexity 31 74 0 631 178 0 9 chr21 15577912 15578019 -19329551 - AluJb SINE Alu -192 120 15 1722 140 91 26 chr21 15578432 15578782 -19328788 - THE1C LTR MaLR 0 375 3 657 66 50 8 chr21 15579167 15579288 -19328282 + GA-rich Low_complexity Low_complexity 1 126 0 2277 76 0 28 chr21 15579290 15579607 -19327963 + AluY SINE Alu 1 308 -3 788 99 0 8 chr21 15579636 15579757 -19327813 + (GGAA)n Simple_repeat Simple_repeat 1 120 0 55 16 0 0 chr21 15579916 15579978 -19327592 + AT_rich Low_complexity Low_complexity 1 62 0 873 154 94 13 chr21 15580146 15580369 -19327201 - MLT2C2 LTR ERVL 0 414 67 297 300 30 10 chr21 15581582 15581682 -19325888 - L2 LINE L2 0 3313 3212 5174 110 18 12 chr21 15582551 15582685 -19324885 + L1PA13 LINE L1 5353 5485 -678 2166 119 0 0 chr21 15582685 15582988 -19324582 + AluSx SINE Alu 1 303 -9 5174 110 18 12 chr21 15582988 15583654 -19323916 + L1PA13 LINE L1 5485 6157 -6 22 56 0 0 chr21 15585806 15585842 -19321728 + AT_rich Low_complexity Low_complexity 1 36 0 437 264 34 7 chr21 15586917 15587065 -19320505 - L1MD3 LINE L1 -12 7983 7832 312 122 0 0 chr21 15587249 15587298 -19320272 - L1M2 LINE L1 -680 5611 5563 1725 191 69 48 chr21 15587316 15587805 -19319765 + L1MA7 LINE L1 5574 6006 -177 30 27 0 0 chr21 15587894 15587931 -19319639 + AT_rich Low_complexity Low_complexity 1 37 0 332 209 35 0 chr21 15587948 15588034 -19319536 - L1MD2 LINE L1 -426 5933 5845 302 312 73 10 chr21 15588105 15588297 -19319273 - L1M4 LINE L1 -2437 3709 3506 23 0 0 0 chr21 15588876 15588899 -19318671 + AT_rich Low_complexity Low_complexity 1 23 0 185 386 85 14 chr21 15589529 15589822 -19317748 - L2 LINE L2 -2139 1175 862 658 296 42 42 chr21 15593474 15593714 -19313856 + MLT1G1 LTR MaLR 43 282 -313 489 250 44 0 chr21 15593966 15594102 -19313468 + MLT1G3 LTR MaLR 211 352 -178 267 275 14 0 chr21 15594580 15594649 -19312921 + L2 LINE L2 3244 3313 0 2658 253 82 38 chr21 15595012 15596099 -19311471 - L1ME1 LINE L1 -7 6159 5040 325 89 0 177 chr21 15596287 15596314 -19311256 + L1MA9 LINE L1 6247 6277 -35 2131 117 3 0 chr21 15596314 15596614 -19310956 - AluSc SINE Alu -8 301 1 325 89 0 177 chr21 15596614 15596665 -19310905 + L1MA9 LINE L1 6277 6311 -1 412 317 28 22 chr21 15597717 15597897 -19309673 - ERVL LTR ERVL -2226 3538 3358 1905 130 6 13 chr21 15598003 15598318 -19309252 - MER34B LTR ERV1 0 565 253 2025 111 13 27 chr21 15599242 15599540 -19308030 + AluSx SINE Alu 13 306 -6 1478 156 23 8 chr21 15599541 15599797 -19307773 - MER34B LTR ERV1 -305 260 1 575 342 0 0 chr21 15599828 15600012 -19307558 - ERVL LTR ERVL -2508 3146 2963 708 311 45 60 chr21 15600112 15600492 -19307078 - ERVL LTR ERVL -2588 2408 2035 645 244 6 26 chr21 15600560 15600716 -19306854 - MER58B DNA MER1_type 0 341 189 879 196 0 0 chr21 15600915 15601124 -19306446 - AluSg/x SINE Alu 0 344 136 778 299 14 71 chr21 15601821 15602172 -19305398 - MLT1H LTR MaLR -217 332 2 271 352 57 0 chr21 15604199 15604304 -19303266 - L2 LINE L2 -358 2914 2804 327 266 124 49 chr21 15604658 15604884 -19302686 - L2 LINE L2 -940 2374 2132 704 194 0 0 chr21 15605577 15605701 -19301869 + FLAM_C SINE Alu 4 127 -16 1396 218 20 47 chr21 15608192 15608600 -19298970 + MLT2C1 LTR ERVL 1 397 0 1939 149 0 3 chr21 15608763 15609058 -19298512 - AluJb SINE Alu -18 294 1 22 0 0 0 chr21 15609064 15609086 -19298484 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr21 15612271 15612298 -19295272 + (TG)n Simple_repeat Simple_repeat 2 28 0 234 91 0 0 chr21 15612297 15612330 -19295240 + (TA)n Simple_repeat Simple_repeat 2 34 0 2159 101 0 3 chr21 15612909 15613205 -19294365 + AluY SINE Alu 1 295 -16 3824 164 30 6 chr21 15614221 15615060 -19292510 - L1MA8 LINE L1 -329 5962 5103 938 145 0 6 chr21 15615100 15615266 -19292304 + L1MA5 LINE L1 6135 6299 -1 484 253 21 16 chr21 15616092 15616286 -19291284 - L1MEc LINE L1 -4083 2313 2119 209 83 28 0 chr21 15616300 15616336 -19291234 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1786 63 29 8 chr21 15616355 15616593 -19290977 - AluY SINE Alu -68 243 1 1933 118 22 0 chr21 15616611 15616881 -19290689 - AluSx SINE Alu -31 281 6 911 154 0 0 chr21 15616959 15617102 -19290468 - MER50 LTR ERV1 -24 710 568 1011 70 0 0 chr21 15617102 15617231 -19290339 + AluY SINE Alu 175 303 -8 2817 172 65 7 chr21 15617232 15617774 -19289796 - MER50 LTR ERV1 -161 573 1 2140 101 0 3 chr21 15618088 15618374 -19289196 + AluSq SINE Alu 1 285 -28 284 270 139 7 chr21 15618390 15618527 -19289043 - L1MEc LINE L1 -4678 1718 1564 805 134 28 0 chr21 15618550 15618692 -19288878 + L1MA9 LINE L1 6167 6312 0 362 253 0 0 chr21 15618759 15618838 -19288732 + L1MDb LINE L1 938 1016 -5393 30 0 0 0 chr21 15619004 15619034 -19288536 + AT_rich Low_complexity Low_complexity 1 30 0 269 140 40 50 chr21 15619324 15619424 -19288146 + (TTATA)n Simple_repeat Simple_repeat 3 101 0 32 0 0 0 chr21 15620037 15620069 -19287501 + AT_rich Low_complexity Low_complexity 1 32 0 2342 77 10 0 chr21 15620883 15621181 -19286389 - AluSp SINE Alu -12 301 1 33 66 0 0 chr21 15622139 15622200 -19285370 + AT_rich Low_complexity Low_complexity 1 61 0 812 271 61 39 chr21 15622511 15622791 -19284779 + MLT1E1 LTR MaLR 13 298 -251 2217 119 3 0 chr21 15624500 15624858 -19282712 + AluSq SINE Alu 1 359 0 22 0 0 0 chr21 15626849 15626871 -19280699 + AT_rich Low_complexity Low_complexity 1 22 0 250 388 68 29 chr21 15627046 15627149 -19280421 + L2 LINE L2 3139 3245 -27 186 43 0 0 chr21 15629063 15629086 -19278484 + (ATG)n Simple_repeat Simple_repeat 1 23 0 337 305 102 37 chr21 15629674 15629861 -19277709 - MIR SINE MIR -62 200 2 21 0 0 0 chr21 15630578 15630599 -19276971 + AT_rich Low_complexity Low_complexity 1 21 0 285 98 0 0 chr21 15632281 15632322 -19275248 + (A)n Simple_repeat Simple_repeat 1 41 0 229 198 25 25 chr21 15632631 15632712 -19274858 + (CATA)n Simple_repeat Simple_repeat 2 82 0 1026 198 0 0 chr21 15633308 15633505 -19274065 - L1PA13 LINE L1 -6 6157 5961 656 245 73 25 chr21 15633693 15633925 -19273645 + MLT1E1 LTR MaLR 1 199 -425 1013 244 57 0 chr21 15633997 15634226 -19273344 + MLT1E1 LTR MaLR 413 654 0 32 67 0 0 chr21 15634325 15634385 -19273185 + AT_rich Low_complexity Low_complexity 1 60 0 1012 262 95 3 chr21 15634446 15634740 -19272830 + MLT1H LTR MaLR 1 321 -228 395 218 59 77 chr21 15634774 15634947 -19272623 + MLT1H LTR MaLR 385 567 0 460 355 18 12 chr21 15635314 15635483 -19272087 - L3 LINE CR1 -102 1475 1306 335 117 117 17 chr21 15635510 15635570 -19272000 + MLT1C LTR MaLR 402 467 0 285 148 37 25 chr21 15635919 15636000 -19271570 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 1796 281 75 20 chr21 15636016 15636317 -19271253 - MLT2F LTR ERVL -43 620 337 252 0 0 0 chr21 15636317 15636345 -19271225 + (CA)n Simple_repeat Simple_repeat 2 29 0 1796 281 75 20 chr21 15636345 15636631 -19270939 - MLT2F LTR ERVL -326 337 1 233 250 64 116 chr21 15636632 15636804 -19270766 - MLT1G LTR MaLR -418 172 10 180 77 0 0 chr21 15636817 15636843 -19270727 + (TG)n Simple_repeat Simple_repeat 1 26 0 292 233 9 60 chr21 15636844 15636960 -19270610 + L1MC4 LINE L1 7902 8011 -31 303 290 32 0 chr21 15639007 15639100 -19268470 + L1MC4 LINE L1 6614 6709 -1333 339 136 51 34 chr21 15639128 15639305 -19268265 + (TA)n Simple_repeat Simple_repeat 1 180 0 218 422 9 28 chr21 15639488 15639597 -19267973 - L3 LINE CR1 -14 1563 1457 433 311 96 26 chr21 15639831 15640101 -19267469 - L3 LINE CR1 -125 1452 1164 2433 151 11 16 chr21 15640123 15640559 -19267011 + MER57B LTR ERV1 1 434 0 2114 172 39 28 chr21 15640811 15641358 -19266212 - MLT2A2 LTR ERVL 0 554 1 4236 105 11 8 chr21 15641358 15641977 -19265593 - HERVL-A2 LTR ERVL 0 5654 5034 6606 83 11 1 chr21 15641966 15642836 -19264734 - HERVL LTR ERVL -2524 3130 2252 290 93 0 0 chr21 15642830 15642873 -19264697 + HERVL LTR ERVL 5430 5472 -182 2345 91 0 0 chr21 15643178 15643474 -19264096 - AluY SINE Alu -14 297 2 2198 103 0 13 chr21 15644165 15644467 -19263103 - AluSg SINE Alu -12 298 1 271 332 41 48 chr21 15644556 15644827 -19262743 + MLT1K LTR MaLR 152 420 -168 2317 247 37 52 chr21 15645187 15646764 -19260806 - L1 LINE L1 -3613 3493 1895 1214 235 82 6 chr21 15646764 15647104 -19260466 + MER47A DNA MER2_type 1 366 0 2317 247 37 52 chr21 15647104 15647464 -19260106 - L1 LINE L1 -5211 1895 1531 2433 77 0 10 chr21 15647464 15647774 -19259796 - AluY SINE Alu -4 307 1 2317 247 37 52 chr21 15647774 15648610 -19258960 - L1 LINE L1 -5575 1531 2 28 29 0 0 chr21 15650788 15650823 -19256747 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr21 15651149 15651179 -19256391 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 189 0 0 0 chr21 15651588 15651609 -19255961 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 21 36 0 0 chr21 15652407 15652435 -19255135 + AT_rich Low_complexity Low_complexity 1 28 0 2400 69 0 35 chr21 15652460 15652777 -19254793 - AluY SINE Alu -5 306 1 755 134 134 99 chr21 15652778 15653010 -19254560 - L1MA8 LINE L1 -24 6267 6028 2048 134 0 10 chr21 15653353 15653651 -19253919 - AluSx SINE Alu -17 295 1 2008 141 132 8 chr21 15655447 15655903 -19251667 - LTR35 LTR ERV1 -42 576 2 1143 240 55 84 chr21 15655903 15656312 -19251258 - MLT1E2 LTR MaLR -127 499 103 745 111 42 0 chr21 15656391 15656535 -19251035 + CT-rich Low_complexity Low_complexity 3 152 0 256 177 0 48 chr21 15656545 15656607 -19250963 - MLT1E2 LTR MaLR -545 81 23 198 0 0 0 chr21 15658075 15658097 -19249473 + (TG)n Simple_repeat Simple_repeat 2 23 0 1207 131 25 47 chr21 15658861 15659097 -19248473 - L1MA8 LINE L1 -297 6003 5773 232 158 35 0 chr21 15659162 15659219 -19248351 + (TATG)n Simple_repeat Simple_repeat 3 61 0 699 183 13 125 chr21 15659759 15659911 -19247659 + MLT1A1 LTR MaLR 225 396 0 195 184 0 0 chr21 15660635 15660673 -19246897 + (TA)n Simple_repeat Simple_repeat 2 39 0 2464 181 2 123 chr21 15660681 15661309 -19246261 + MLT2B3 LTR ERVL 1 552 -2 231 162 0 0 chr21 15661912 15661949 -19245621 - MLT1K LTR MaLR 0 588 552 1009 299 71 69 chr21 15662067 15662817 -19244753 - L2 LINE L2 -975 2339 1587 2398 59 0 36 chr21 15662817 15663124 -19244446 + AluY SINE Alu 1 296 -15 26259 66 5 16 chr21 15663213 15668481 -19239089 - L1PA6 LINE L1 -2 6152 952 1090 327 105 12 chr21 15668670 15669477 -19238093 + L2 LINE L2 2355 3221 -92 32 57 0 0 chr21 15669729 15669782 -19237788 + AT_rich Low_complexity Low_complexity 1 53 0 281 305 12 0 chr21 15671141 15671223 -19236347 + MIR SINE MIR 109 191 -71 23 97 0 0 chr21 15671363 15671435 -19236135 + AT_rich Low_complexity Low_complexity 1 72 0 2893 171 94 87 chr21 15671501 15672321 -19235249 + LTR1B LTR ERV1 1 826 0 21 0 0 0 chr21 15672448 15672469 -19235101 + AT_rich Low_complexity Low_complexity 1 21 0 307 314 73 16 chr21 15672815 15672939 -19234631 - L1MB8 LINE L1 -8 6170 6040 342 70 0 0 chr21 15672980 15673023 -19234547 - L1MA9 LINE L1 -154 6158 6116 256 218 0 0 chr21 15673852 15673907 -19233663 - MLT1J LTR MaLR -317 194 140 1562 197 96 23 chr21 15673911 15674425 -19233145 - MLT2A2 LTR ERVL -8 546 1 1910 217 32 18 chr21 15674939 15675382 -19232188 + MLT1C LTR MaLR 1 449 -18 2389 73 0 29 chr21 15675466 15675781 -19231789 - AluY SINE Alu -5 306 1 22 0 0 0 chr21 15675984 15676006 -19231564 + AT_rich Low_complexity Low_complexity 1 22 0 693 286 34 81 chr21 15676351 15676882 -19230688 + L2 LINE L2 1487 1992 -1322 327 62 15 108 chr21 15677133 15677176 -19230394 - MLT2B1 LTR ERVL 0 520 483 396 88 0 0 chr21 15677176 15677233 -19230337 + (TAGG)n Simple_repeat Simple_repeat 3 59 0 327 62 15 108 chr21 15677233 15677254 -19230316 - MLT2B1 LTR ERVL -37 483 462 1467 163 19 16 chr21 15677266 15677563 -19230007 - MER61B LTR ERV1 -29 396 5 689 53 11 0 chr21 15677563 15677657 -19229913 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 1621 247 25 71 chr21 15677667 15678189 -19229381 - MLT2B3 LTR ERVL -56 498 1 1305 328 74 17 chr21 15678197 15678857 -19228713 + L2 LINE L2 2404 3135 -178 315 0 0 0 chr21 15678954 15678989 -19228581 + (TG)n Simple_repeat Simple_repeat 2 36 0 283 241 48 12 chr21 15679578 15679661 -19227909 + L2 LINE L2 3168 3253 -19 22 0 0 0 chr21 15681139 15681161 -19226409 + AT_rich Low_complexity Low_complexity 1 22 0 1016 200 21 108 chr21 15682667 15683047 -19224523 + MLT2C1 LTR ERVL 30 376 -21 347 221 36 7 chr21 15683815 15683955 -19223615 + (TA)n Simple_repeat Simple_repeat 2 145 0 245 308 100 17 chr21 15683998 15684118 -19223452 - MLT1I LTR MaLR 0 409 280 24 0 0 0 chr21 15684591 15684615 -19222955 + AT_rich Low_complexity Low_complexity 1 24 0 2145 184 65 91 chr21 15685086 15685655 -19221915 - MLT2B3 LTR ERVL 0 554 1 289 269 0 13 chr21 15686750 15686828 -19220742 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 584 195 7 28 chr21 15687005 15687291 -19220279 + CT-rich Low_complexity Low_complexity 1 279 0 2618 37 0 3 chr21 15687508 15687806 -19219764 - AluY SINE Alu -14 297 1 228 167 121 30 chr21 15691742 15691808 -19215762 - MER116 DNA Mariner -2 78 7 265 240 54 54 chr21 15691928 15692057 -19215513 + MIR SINE MIR 133 261 -1 35 0 0 0 chr21 15692816 15692851 -19214719 + AT_rich Low_complexity Low_complexity 1 35 0 497 256 78 11 chr21 15693166 15693357 -19214213 - MER3 DNA MER1_type -4 205 2 198 0 0 0 chr21 15693543 15693565 -19214005 + (CA)n Simple_repeat Simple_repeat 2 23 0 207 100 0 0 chr21 15694789 15694819 -19212751 + (CA)n Simple_repeat Simple_repeat 1 30 0 226 200 44 0 chr21 15695168 15695213 -19212357 + polypyrimidine Low_complexity Low_complexity 4 50 0 381 275 23 0 chr21 15695361 15695492 -19212078 + (TA)n Simple_repeat Simple_repeat 2 135 0 23 54 0 0 chr21 15696319 15696356 -19211214 + AT_rich Low_complexity Low_complexity 1 37 0 2559 32 0 29 chr21 15696784 15697092 -19210478 - AluY SINE Alu -12 299 1 201 390 0 0 chr21 15697244 15697303 -19210267 - L3 LINE CR1 -137 1440 1382 446 342 71 8 chr21 15697586 15697826 -19209744 + MIR SINE MIR 8 262 0 317 231 8 23 chr21 15697963 15698093 -19209477 + (TA)n Simple_repeat Simple_repeat 1 128 0 2354 60 3 17 chr21 15699724 15700024 -19207546 + AluY SINE Alu 1 296 -15 1148 221 5 5 chr21 15700026 15700239 -19207331 + MLT1A1 LTR MaLR 153 365 0 498 204 37 0 chr21 15700346 15700454 -19207116 + LTR57 LTR ERVL 299 410 -1 1957 164 26 3 chr21 15701014 15701361 -19206209 + THE1A LTR MaLR 1 355 0 2619 32 0 22 chr21 15702372 15702685 -19204885 + AluY SINE Alu 2 307 -4 219 284 136 0 chr21 15703045 15703126 -19204444 - L2 LINE L2 -2 3311 3220 675 280 48 5 chr21 15704215 15704404 -19203166 - MIR SINE MIR -50 212 16 21 36 0 0 chr21 15704647 15704675 -19202895 + AT_rich Low_complexity Low_complexity 1 28 0 219 36 0 0 chr21 15705167 15705195 -19202375 + (CA)n Simple_repeat Simple_repeat 1 28 0 279 330 0 10 chr21 15706780 15706880 -19200690 - L2 LINE L2 0 3272 3174 287 275 36 80 chr21 15706910 15707048 -19200522 + MER5A DNA MER1_type 33 164 -25 218 253 27 40 chr21 15707159 15707234 -19200336 + L2 LINE L2 3199 3272 0 449 251 11 91 chr21 15708687 15708874 -19198696 + L1 LINE L1 4865 5036 -1110 2433 151 21 31 chr21 15709466 15709891 -19197679 + Tigger2a DNA MER2_type 7 427 -7 741 211 93 120 chr21 15709929 15710336 -19197234 - MSTD LTR MaLR 0 396 1 2724 245 35 28 chr21 15710424 15711864 -19195706 - MSTD-int LTR MaLR -96 1639 1 269 118 20 0 chr21 15711963 15712014 -19195556 + (CA)n Simple_repeat Simple_repeat 1 52 0 386 75 0 0 chr21 15712896 15712949 -19194621 - L1PA6 LINE L1 -87 6067 6015 210 282 0 28 chr21 15714131 15714202 -19193368 + (CATATA)n Simple_repeat Simple_repeat 2 70 0 276 261 43 22 chr21 15714218 15714307 -19193263 - L2 LINE L2 -1639 1675 1585 752 72 0 0 chr21 15714307 15714404 -19193166 + AluY SINE Alu 3 99 -212 2470 52 0 13 chr21 15714310 15714620 -19192950 + AluY SINE Alu 6 311 0 32 43 0 0 chr21 15715209 15715255 -19192315 + AT_rich Low_complexity Low_complexity 1 46 0 2547 134 25 7 chr21 15716220 15716660 -19190910 + L1MA9 LINE L1 5865 6312 0 26 74 0 0 chr21 15717130 15717184 -19190386 + AT_rich Low_complexity Low_complexity 1 54 0 234 91 0 0 chr21 15717839 15717872 -19189698 + (TA)n Simple_repeat Simple_repeat 1 33 0 210 158 35 18 chr21 15717923 15717980 -19189590 + (TA)n Simple_repeat Simple_repeat 2 59 0 949 207 0 0 chr21 15718054 15718223 -19189347 + FRAM SINE Alu 1 166 -10 23 0 0 0 chr21 15718233 15718256 -19189314 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr21 15718542 15718569 -19189001 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 15719281 15719302 -19188268 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr21 15721269 15721316 -19186254 + AT_rich Low_complexity Low_complexity 1 47 0 25 0 0 0 chr21 15721646 15721671 -19185899 + AT_rich Low_complexity Low_complexity 1 25 0 266 238 0 16 chr21 15722141 15722204 -19185366 + MLT1A2 LTR MaLR 1 62 -312 300 326 80 66 chr21 15722331 15722632 -19184938 - L2 LINE L2 -1 3312 3008 453 255 10 0 chr21 15722968 15723066 -19184504 - MER5A DNA MER1_type -1 188 90 23 68 0 0 chr21 15724170 15724214 -19183356 + AT_rich Low_complexity Low_complexity 1 44 0 282 29 0 0 chr21 15724268 15724303 -19183267 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr21 15726019 15726048 -19181522 + AT_rich Low_complexity Low_complexity 1 29 0 753 205 0 13 chr21 15726258 15726414 -19181156 + FAM SINE Alu 13 166 -19 414 316 53 8 chr21 15727005 15727138 -19180432 + MER91C DNA MER1_type 2 140 0 1700 166 27 3 chr21 15727924 15728396 -19179174 + AluSx SINE Alu 1 312 0 22 0 0 0 chr21 15728549 15728571 -19178999 + AT_rich Low_complexity Low_complexity 1 22 0 30 59 0 0 chr21 15730326 15730377 -19177193 + AT_rich Low_complexity Low_complexity 1 51 0 288 316 66 37 chr21 15730993 15731129 -19176441 + L2 LINE L2 3172 3311 -2 281 218 18 0 chr21 15731528 15731583 -19175987 - MER45 DNA AcHobo 0 1581 1526 709 319 76 68 chr21 15731629 15732169 -19175401 - MER45C DNA AcHobo -405 548 5 677 221 68 0 chr21 15732204 15732367 -19175203 - MSTD LTR MaLR 0 396 223 2239 109 0 3 chr21 15732495 15732806 -19174764 - AluSg SINE Alu 0 310 1 486 327 38 73 chr21 15733089 15733269 -19174301 + L1P LINE L1 3125 3310 -2836 2418 63 0 31 chr21 15733269 15733586 -19173984 + AluY SINE Alu 5 311 0 486 327 38 73 chr21 15733586 15734161 -19173409 + L1P LINE L1 3310 3854 -2292 1759 98 64 26 chr21 15735001 15735267 -19172303 + AluY SINE Alu 3 278 -33 387 0 0 0 chr21 15735270 15735313 -19172257 + (CA)n Simple_repeat Simple_repeat 2 44 0 661 215 0 8 chr21 15736366 15736487 -19171083 + FLAM_A SINE Alu 1 120 -22 1177 133 39 12 chr21 15737376 15737670 -19169900 - THE1B LTR MaLR 0 364 1 871 211 67 0 chr21 15738335 15738544 -19169026 - L1MA8 LINE L1 -1 6290 6068 1303 170 119 11 chr21 15738946 15739223 -19168347 - AluSg1 SINE Alu -2 307 1 348 83 0 0 chr21 15740705 15740753 -19166817 + (CA)n Simple_repeat Simple_repeat 2 49 0 28 0 0 0 chr21 15741244 15741272 -19166298 + AT_rich Low_complexity Low_complexity 1 28 0 1452 195 0 15 chr21 15741457 15741729 -19165841 + AluJo SINE Alu 1 268 -44 1246 216 76 38 chr21 15741884 15742227 -19165343 - MLT1A2 LTR MaLR -18 356 1 1487 242 33 23 chr21 15742233 15742701 -19164869 - MLT1A2-int LTR MaLR -7 1628 893 294 231 0 33 chr21 15742721 15742812 -19164758 - MLT1A2-int LTR MaLR -968 767 680 1508 204 88 65 chr21 15742947 15743379 -19164191 - MLT1A2-int LTR MaLR -639 732 291 580 182 9 0 chr21 15743383 15743493 -19164077 - MLT1A2-int LTR MaLR -1620 115 5 1224 230 80 28 chr21 15743499 15743851 -19163719 - MLT1A2 LTR MaLR -2 372 3 535 294 66 36 chr21 15744247 15744598 -19162972 + MLT1G3 LTR MaLR 1 418 -177 21 0 0 0 chr21 15744730 15744751 -19162819 + AT_rich Low_complexity Low_complexity 1 21 0 303 146 22 135 chr21 15744885 15744974 -19162596 - L1MA9 LINE L1 -67 6245 6167 210 171 0 0 chr21 15746071 15746112 -19161458 + (CA)n Simple_repeat Simple_repeat 1 41 0 193 93 0 47 chr21 15746550 15746593 -19160977 + (CAAAA)n Simple_repeat Simple_repeat 3 43 0 1666 139 49 85 chr21 15747983 15748146 -19159424 + THE1C LTR MaLR 1 168 -207 2289 74 0 0 chr21 15748146 15748429 -19159141 - AluY SINE Alu -2 309 27 1666 139 49 85 chr21 15748429 15748654 -19158916 + THE1C LTR MaLR 168 375 0 2453 131 19 10 chr21 15748654 15749347 -19158223 + THE1C-int LTR MaLR 1 761 -819 273 366 64 29 chr21 15749838 15750010 -19157560 - L2 LINE L2 -540 2774 2597 397 313 20 1 chr21 15751773 15751971 -19155599 + MIR SINE MIR 42 262 0 589 159 0 9 chr21 15752013 15752120 -19155450 + MLT2C2 LTR ERVL 1 106 -358 8089 66 4 0 chr21 15752120 15753407 -19154163 - L1PA6 LINE L1 -549 5605 4314 4143 78 0 0 chr21 15753407 15753943 -19153627 + L1PA6 LINE L1 5605 6141 -13 495 0 0 0 chr21 15753943 15753998 -19153572 + (TA)n Simple_repeat Simple_repeat 2 56 0 953 193 113 42 chr21 15753998 15754051 -19153519 + MLT2C2 LTR ERVL 97 145 -319 1893 111 41 4 chr21 15754051 15754343 -19153227 + AluSc SINE Alu 1 302 0 953 193 113 42 chr21 15754343 15754526 -19153044 + MLT2C2 LTR ERVL 145 351 -113 231 61 0 0 chr21 15754533 15754566 -19153004 + (TC)n Simple_repeat Simple_repeat 2 34 0 192 162 60 17 chr21 15754565 15754682 -19152888 + (TA)n Simple_repeat Simple_repeat 1 122 0 332 165 23 45 chr21 15754693 15754826 -19152744 + (TA)n Simple_repeat Simple_repeat 2 131 0 269 300 194 12 chr21 15754847 15755017 -19152553 - L2 LINE L2 0 3313 3113 34 24 0 0 chr21 15755265 15755306 -19152264 + AT_rich Low_complexity Low_complexity 1 41 0 271 189 57 66 chr21 15755747 15755853 -19151717 - HAL1b LINE L1 -479 869 765 251 354 62 0 chr21 15756967 15757063 -19150507 + L2 LINE L2 2941 3042 -271 2226 104 27 30 chr21 15757800 15758165 -19149405 + THE1B LTR MaLR 1 364 0 1379 257 58 2 chr21 15758277 15758670 -19148900 + MLT1C LTR MaLR 53 467 0 916 331 47 43 chr21 15760213 15760705 -19146865 + L2 LINE L2 2405 2898 -416 216 0 0 0 chr21 15760815 15760839 -19146731 + (T)n Simple_repeat Simple_repeat 1 24 0 1788 131 0 15 chr21 15760839 15761099 -19146471 - AluSx SINE Alu -56 256 1 662 323 62 19 chr21 15761099 15761359 -19146211 + L2 LINE L2 3037 3307 -6 316 300 100 0 chr21 15761453 15761593 -19145977 + MLT1L LTR MaLR 314 467 -148 386 225 110 88 chr21 15761847 15762029 -19145541 + MIR SINE MIR 1 186 -76 485 134 0 0 chr21 15763168 15763250 -19144320 - AluSp/q SINE Alu 0 313 232 23 24 0 24 chr21 15764217 15764237 -19143333 + AT_rich Low_complexity Low_complexity 1 20 -20 1715 182 0 17 chr21 15764237 15764528 -19143042 - AluJb SINE Alu -26 286 1 23 24 0 24 chr21 15764528 15764548 -19143022 + AT_rich Low_complexity Low_complexity 20 40 0 511 244 54 66 chr21 15764628 15764767 -19142803 - MER112 DNA MER1_type -20 240 104 243 61 0 0 chr21 15764767 15764800 -19142770 + (TG)n Simple_repeat Simple_repeat 1 33 0 511 244 54 66 chr21 15764800 15764902 -19142668 - MER112 DNA MER1_type -156 104 2 536 352 57 8 chr21 15765346 15765593 -19141977 + MIR SINE MIR 4 262 0 273 182 0 0 chr21 15765873 15765928 -19141642 + GA-rich Low_complexity Low_complexity 3 57 0 12622 219 24 24 chr21 15766492 15769472 -19138098 + L1PB3 LINE L1 350 3411 -2800 1594 181 0 14 chr21 15769472 15769749 -19137821 - AluJo SINE Alu -39 273 1 12622 219 24 24 chr21 15769749 15772234 -19135336 + L1PB3 LINE L1 3411 5895 -316 1596 193 21 32 chr21 15772237 15772513 -19135057 + L1PB3 LINE L1 5784 6056 -98 2141 102 3 51 chr21 15772513 15772828 -19134742 - AluSx SINE Alu -12 300 1 1596 193 21 32 chr21 15772828 15772924 -19134646 + L1PB3 LINE L1 6056 6152 -2 389 296 48 0 chr21 15773119 15773244 -19134326 + L1ME LINE L1 5505 5635 -535 6611 82 11 1 chr21 15773324 15774670 -19132900 + L1PA8 LINE L1 4812 6172 0 567 204 7 0 chr21 15774832 15774974 -19132596 - L1MA6 LINE L1 -4 6296 6154 873 174 7 0 chr21 15774977 15775280 -19132290 + L1MA6 LINE L1 5796 6143 -157 7749 23 1 0 chr21 15775293 15776322 -19131248 + L1PA3 LINE L1 5126 6155 0 258 56 0 0 chr21 15776377 15776413 -19131157 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 259 268 0 12 chr21 15777259 15777341 -19130229 + L1 LINE L1 3843 3923 -2223 21 36 0 0 chr21 15781376 15781404 -19126166 + AT_rich Low_complexity Low_complexity 1 28 0 2519 124 3 0 chr21 15782511 15782874 -19124696 - THE1B LTR MaLR 0 364 1 9909 127 25 30 chr21 15782874 15784461 -19123109 - THE1B-int LTR MaLR 0 1580 1 2375 128 23 0 chr21 15784463 15784815 -19122755 - THE1B LTR MaLR -4 360 1 2255 245 57 36 chr21 15785686 15786512 -19121058 - L1MC4a LINE L1 0 7808 6966 510 271 2 4 chr21 15786522 15786671 -19120899 - L1MC4a LINE L1 -1033 6752 6603 2006 261 50 57 chr21 15786812 15787911 -19119659 - L1MC4a LINE L1 -19 6147 5773 1333 218 8 0 chr21 15787923 15788184 -19119386 - AluJo SINE Alu -49 263 1 23 0 0 0 chr21 15788192 15788215 -19119355 + AT_rich Low_complexity Low_complexity 1 23 0 258 116 0 0 chr21 15789305 15789348 -19118222 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr21 15789569 15789604 -19117966 + AT_rich Low_complexity Low_complexity 1 35 0 303 28 0 0 chr21 15790413 15790449 -19117121 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 1967 131 0 7 chr21 15790449 15790731 -19116839 - AluSx SINE Alu -32 280 1 313 323 119 23 chr21 15790769 15791113 -19116457 - L2 LINE L2 -1061 2253 1877 402 221 23 0 chr21 15791131 15791217 -19116353 + MLT1B LTR MaLR 1 88 -302 1251 144 0 51 chr21 15791221 15791384 -19116186 + L1MA4 LINE L1 6023 6170 -130 2056 125 3 10 chr21 15791384 15791681 -19115889 + AluSx SINE Alu 1 295 -17 1251 144 0 51 chr21 15791681 15791774 -19115796 + L1MA4 LINE L1 6170 6266 -34 995 176 79 93 chr21 15791790 15792007 -19115563 + MLT1B LTR MaLR 113 327 -63 2242 106 0 3 chr21 15792007 15792310 -19115260 + AluSc SINE Alu 1 302 -7 995 176 79 93 chr21 15792310 15792371 -19115199 + MLT1B LTR MaLR 327 387 -3 750 103 198 0 chr21 15792486 15792612 -19114958 - AluSx SINE Alu -8 302 152 624 112 0 0 chr21 15792610 15792699 -19114871 - AluSx SINE Alu -224 89 1 1278 246 80 23 chr21 15793554 15793940 -19113630 - MLT1D LTR MaLR 0 505 98 287 264 73 0 chr21 15794003 15794113 -19113457 - MLT1D-int LTR MaLR -7 1364 1247 23 33 0 0 chr21 15794170 15794200 -19113370 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr21 15794697 15794724 -19112846 + AT_rich Low_complexity Low_complexity 1 27 0 1072 185 54 0 chr21 15795335 15795540 -19112030 - L1MC3 LINE L1 -438 7347 7132 1242 164 44 48 chr21 15795548 15795841 -19111729 - L1MC3 LINE L1 -695 7090 6799 244 309 48 88 chr21 15796711 15797005 -19110565 - L2 LINE L2 -16 3297 3016 199 415 35 54 chr21 15797058 15797318 -19110252 + L2 LINE L2 2721 2975 -339 338 299 120 0 chr21 15797497 15797614 -19109956 + L2 LINE L2 3183 3313 0 752 293 0 11 chr21 15798111 15798285 -19109285 + MER5B DNA MER1_type 7 178 0 26 30 0 0 chr21 15798384 15798417 -19109153 + AT_rich Low_complexity Low_complexity 1 33 0 1940 125 24 3 chr21 15799495 15799790 -19107780 + AluSx SINE Alu 1 301 -11 663 186 64 41 chr21 15800521 15800693 -19106877 + MLT1A1 LTR MaLR 1 176 -189 714 120 0 0 chr21 15800694 15800819 -19106751 + (TC)n Simple_repeat Simple_repeat 2 126 0 977 247 112 47 chr21 15802360 15802759 -19104811 + MLT1C LTR MaLR 11 435 -32 528 111 0 12 chr21 15802759 15802840 -19104730 + MADE1 DNA Mariner 1 80 0 22 0 0 0 chr21 15803958 15803980 -19103590 + AT_rich Low_complexity Low_complexity 1 22 0 28 61 0 0 chr21 15804468 15804517 -19103053 + AT_rich Low_complexity Low_complexity 1 49 0 382 314 5 0 chr21 15805058 15805274 -19102296 + (CAGAGA)n Simple_repeat Simple_repeat 1 217 0 296 333 0 7 chr21 15805276 15805429 -19102141 + GA-rich Low_complexity Low_complexity 2 153 0 220 238 66 0 chr21 15805433 15805555 -19102015 + (CAGAGA)n Simple_repeat Simple_repeat 4 133 0 194 286 29 6 chr21 15805587 15805762 -19101808 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 247 254 14 0 chr21 15806123 15806194 -19101376 + MER94 DNA DNA 1 72 -62 442 208 130 16 chr21 15806588 15806780 -19100790 + MER114 LTR ERV 120 333 -315 319 252 20 10 chr21 15807010 15807109 -19100461 + MER114 LTR ERV 310 409 -239 14079 23 0 1 chr21 15807111 15809536 -19098034 + L1PA2 LINE L1 3730 6155 0 1737 161 57 0 chr21 15809744 15810023 -19097547 - AluJb SINE Alu -17 295 1 2240 164 10 8 chr21 15810594 15810996 -19096574 + MER57A LTR ERV1 1 403 0 357 169 0 0 chr21 15811606 15811708 -19095862 - AluJ/FRAM SINE Alu 0 330 229 483 43 0 14 chr21 15811989 15812058 -19095512 - L1PA2 LINE L1 0 6155 6088 3649 16 0 0 chr21 15812058 15812537 -19095033 + L1P1 LINE L1 4957 5435 -720 209 281 12 0 chr21 15813000 15813082 -19094488 + (TA)n Simple_repeat Simple_repeat 2 84 0 1648 187 0 0 chr21 15813253 15813520 -19094050 + AluJo SINE Alu 1 267 -45 461 270 26 74 chr21 15814227 15814457 -19093113 - MLT1H LTR MaLR -2 547 329 820 209 18 0 chr21 15815276 15815439 -19092131 + FAM SINE Alu 2 167 -8 2511 64 0 0 chr21 15816397 15816741 -19090829 - AluY SINE Alu 0 344 1 1496 213 0 24 chr21 15817271 15817567 -19090003 + AluJo SINE Alu 1 289 -23 25 51 0 0 chr21 15818161 15818200 -19089370 + AT_rich Low_complexity Low_complexity 1 39 0 281 147 53 35 chr21 15818931 15819101 -19088469 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 30 0 0 0 chr21 15819106 15819136 -19088434 + AT_rich Low_complexity Low_complexity 1 30 0 32 26 0 0 chr21 15819223 15819262 -19088308 + AT_rich Low_complexity Low_complexity 1 39 0 398 330 40 25 chr21 15819313 15819513 -19088057 - L1MC/D LINE L1 -2032 5776 5574 452 192 0 53 chr21 15819707 15819894 -19087676 + GA-rich Low_complexity Low_complexity 3 179 0 22 35 0 0 chr21 15820416 15820445 -19087125 + AT_rich Low_complexity Low_complexity 1 29 0 316 265 61 10 chr21 15820767 15820865 -19086705 + L2 LINE L2 3192 3294 -19 387 203 51 51 chr21 15821838 15821956 -19085614 + MIR SINE MIR 35 152 -110 185 256 0 0 chr21 15822287 15822326 -19085244 + MIR SINE MIR 206 244 -18 2014 138 0 0 chr21 15822632 15822922 -19084648 - AluSx SINE Alu -22 290 1 4522 51 0 130 chr21 15823521 15824250 -19083320 + L1PA7 LINE L1 5517 6150 -4 2323 242 57 8 chr21 15824630 15825224 -19082346 - MLT1E2 LTR MaLR -3 623 1 972 161 0 0 chr21 15828749 15828922 -19078648 - AluSg/x SINE Alu 0 305 133 980 292 36 28 chr21 15829259 15829650 -19077920 + MLT1I LTR MaLR 16 409 0 27 29 0 0 chr21 15830907 15830941 -19076629 + AT_rich Low_complexity Low_complexity 1 34 0 4512 94 22 12 chr21 15831040 15831719 -19075851 - L1PA14 LINE L1 0 6161 5476 24455 158 11 13 chr21 15831722 15838142 -19069428 - L1PA8 LINE L1 -14 6473 1 4335 182 23 24 chr21 15838142 15838193 -19069377 - L1PA14 LINE L1 -676 5485 5435 207 25 75 0 chr21 15838193 15838233 -19069337 + (TTG)n Simple_repeat Simple_repeat 3 45 0 1479 136 0 44 chr21 15838236 15838486 -19069084 - AluSx SINE Alu -36 276 38 4335 182 23 24 chr21 15838486 15838542 -19069028 - L1PA14 LINE L1 -728 5433 5378 3224 50 0 0 chr21 15838542 15838944 -19068626 - L1PA5 LINE L1 0 6154 5753 4335 182 23 24 chr21 15838944 15839921 -19067649 - L1PA14 LINE L1 -783 5378 4398 270 0 0 0 chr21 15840097 15840127 -19067443 + (TG)n Simple_repeat Simple_repeat 2 31 0 29 28 0 0 chr21 15840658 15840694 -19066876 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr21 15840825 15840853 -19066717 + AT_rich Low_complexity Low_complexity 1 28 0 206 317 129 10 chr21 15841754 15841855 -19065715 - MIR SINE MIR -118 144 32 333 342 6 13 chr21 15842866 15843024 -19064546 + (CCA)n Simple_repeat Simple_repeat 1 157 0 5443 207 34 39 chr21 15843776 15845092 -19062478 - L1MC3 LINE L1 -20 7765 6456 5466 151 28 3 chr21 15845095 15846249 -19061321 - L1PA16 LINE L1 0 6166 4986 1931 227 4 24 chr21 15846268 15846726 -19060844 - L1PA16 LINE L1 -1146 5000 4552 3804 270 52 36 chr21 15846725 15847478 -19060092 - L1MCb LINE L1 -2220 4206 3467 2419 63 7 0 chr21 15847478 15847780 -19059790 - AluY SINE Alu -7 304 1 3804 270 52 36 chr21 15847780 15848368 -19059202 - L1MCb LINE L1 -2959 3467 2890 1338 184 73 57 chr21 15848368 15848722 -19058848 + MLT1A1 LTR MaLR 3 362 -3 3804 270 52 36 chr21 15848722 15850048 -19057522 - L1MCb LINE L1 -3536 2890 1302 1348 186 136 9 chr21 15850048 15850371 -19057199 + THE1B LTR MaLR 1 364 0 3804 270 52 36 chr21 15850371 15851351 -19056219 - L1MCb LINE L1 -5124 1302 339 347 333 35 0 chr21 15851651 15851792 -19055778 - L1MCb LINE L1 -6245 181 36 22 0 0 0 chr21 15851911 15851933 -19055637 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr21 15852152 15852182 -19055388 + AT_rich Low_complexity Low_complexity 1 30 0 641 278 32 9 chr21 15852414 15852630 -19054940 + MER58A DNA MER1_type 1 221 -3 1742 228 88 26 chr21 15854711 15855167 -19052403 + MLT2B1 LTR ERVL 2 485 -35 227 209 0 0 chr21 15855216 15855259 -19052311 + MLT2C2 LTR ERVL 422 464 0 1793 85 40 0 chr21 15855768 15856015 -19051555 + AluY SINE Alu 42 298 -13 185 250 21 0 chr21 15856218 15856266 -19051304 - L2 LINE L2 -3 3269 3221 2464 59 7 0 chr21 15856371 15856675 -19050895 - AluY SINE Alu -5 306 1 729 364 107 25 chr21 15857356 15857952 -19049618 + L2 LINE L2 16 660 -2654 316 199 0 31 chr21 15857960 15858116 -19049454 + (TA)n Simple_repeat Simple_repeat 2 157 0 352 296 17 11 chr21 15858163 15858339 -19049231 + (TA)n Simple_repeat Simple_repeat 1 177 0 350 296 29 0 chr21 15858378 15858550 -19049020 + (TA)n Simple_repeat Simple_repeat 1 177 0 370 286 6 22 chr21 15858561 15858743 -19048827 + (TA)n Simple_repeat Simple_repeat 2 180 0 240 59 0 0 chr21 15858773 15858807 -19048763 + (TA)n Simple_repeat Simple_repeat 2 35 0 213 309 12 12 chr21 15858825 15858909 -19048661 + L2 LINE L2 695 778 -2536 3644 141 3 2 chr21 15859035 15859826 -19047744 + L1PB1 LINE L1 4990 5781 -370 202 182 0 0 chr21 15859835 15859868 -19047702 + (TG)n Simple_repeat Simple_repeat 2 34 0 324 219 0 0 chr21 15859868 15859950 -19047620 + (CA)n Simple_repeat Simple_repeat 2 83 0 2480 103 0 6 chr21 15859950 15860310 -19047260 + L1PB1 LINE L1 5791 6148 -3 2081 99 0 29 chr21 15860324 15860637 -19046933 + L1P LINE L1 2008 2311 -3835 2062 70 0 28 chr21 15860650 15860934 -19046636 + AluY SINE Alu 35 310 -1 261 266 25 0 chr21 15862103 15862182 -19045388 - Zaphod DNA AcHobo 0 4023 3943 364 286 65 32 chr21 15862215 15862369 -19045201 - MER5B DNA MER1_type -7 171 13 4707 137 38 56 chr21 15863658 15864569 -19043001 + L1MA5A LINE L1 5398 6292 -5 728 236 75 0 chr21 15865069 15865243 -19042327 - MER20 DNA MER1_type 0 219 33 328 270 131 72 chr21 15865930 15866167 -19041403 + HAL1 LINE L1 1536 1786 -721 504 82 0 0 chr21 15866397 15866470 -19041100 + L1PA2 LINE L1 6083 6155 0 2455 51 0 10 chr21 15866618 15866929 -19040641 - AluY SINE Alu -3 308 1 614 259 7 0 chr21 15866990 15867133 -19040437 - L1ME1 LINE L1 -16 6150 6007 728 264 43 8 chr21 15867138 15867392 -19040178 - L1ME1 LINE L1 -185 5981 5719 262 198 37 25 chr21 15867567 15867648 -19039922 + HAL1 LINE L1 1440 1521 -986 1951 185 15 61 chr21 15867696 15868156 -19039414 + MLT1D-int LTR MaLR 222 660 -711 1124 292 79 49 chr21 15868203 15868799 -19038771 + MLT1D-int LTR MaLR 651 1264 -107 1516 209 92 63 chr21 15868814 15869239 -19038331 + MLT1D LTR MaLR 35 471 -34 540 271 83 26 chr21 15869771 15869963 -19037607 + HAL1 LINE L1 1590 1792 -715 204 209 0 0 chr21 15870174 15870217 -19037353 + (CAA)n Simple_repeat Simple_repeat 2 44 0 219 69 0 0 chr21 15870259 15870288 -19037282 + (CA)n Simple_repeat Simple_repeat 2 30 0 315 307 126 21 chr21 15872026 15872264 -19035306 + L2 LINE L2 2070 2332 -982 462 238 18 67 chr21 15872897 15873033 -19034537 + L2 LINE L2 3158 3286 -27 1928 109 26 23 chr21 15873033 15873335 -19034235 - AluSp SINE Alu -10 303 1 462 238 18 67 chr21 15873335 15873362 -19034208 + L2 LINE L2 3286 3313 0 22 88 0 0 chr21 15873869 15873926 -19033644 + AT_rich Low_complexity Low_complexity 1 57 0 25 0 0 0 chr21 15874700 15874725 -19032845 + AT_rich Low_complexity Low_complexity 1 25 0 1495 142 93 79 chr21 15874988 15875354 -19032216 + THE1C LTR MaLR 5 375 0 25 31 0 0 chr21 15875544 15875576 -19031994 + AT_rich Low_complexity Low_complexity 1 32 0 2323 120 25 6 chr21 15876043 15876400 -19031170 - THE1B LTR MaLR 0 364 1 1705 266 70 40 chr21 15876678 15877057 -19030513 - MLT1G LTR MaLR 0 590 187 1644 190 89 6 chr21 15877057 15877394 -19030176 + MLT1A1 LTR MaLR 1 365 0 1705 266 70 40 chr21 15877394 15877585 -19029985 - MLT1G LTR MaLR -403 187 3 228 255 87 67 chr21 15877587 15877736 -19029834 - MLT1G-int LTR MaLR 0 1371 1220 459 0 0 0 chr21 15879284 15879335 -19028235 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 373 119 341 48 chr21 15880864 15880990 -19026580 - MSTA LTR MaLR -265 163 1 1994 115 24 3 chr21 15882049 15882336 -19025234 - THE1B LTR MaLR -9 355 63 768 213 30 0 chr21 15883585 15883749 -19023821 + L1PB4 LINE L1 5980 6148 -8 26 74 0 0 chr21 15883846 15883900 -19023670 + AT_rich Low_complexity Low_complexity 1 54 0 326 254 80 51 chr21 15885066 15885136 -19022434 - L1MEc LINE L1 -2741 3641 3575 986 132 0 6 chr21 15885136 15885295 -19022275 + L1PA14 LINE L1 5998 6155 -6 326 254 80 51 chr21 15885295 15885500 -19022070 - L1MEc LINE L1 -2807 3575 3358 33 66 0 0 chr21 15885600 15885661 -19021909 + AT_rich Low_complexity Low_complexity 1 61 0 1686 281 60 40 chr21 15885672 15886543 -19021027 - L1MEc LINE L1 -3131 3251 2364 2237 101 7 3 chr21 15886613 15886920 -19020650 - AluSg SINE Alu -2 308 1 690 302 21 4 chr21 15886920 15887162 -19020408 - L1MEc LINE L1 -4566 1997 1752 256 75 19 57 chr21 15887172 15887225 -19020345 + (TA)n Simple_repeat Simple_repeat 2 52 0 411 21 0 0 chr21 15887297 15887345 -19020225 + (TA)n Simple_repeat Simple_repeat 1 48 0 720 308 93 36 chr21 15887482 15887921 -19019649 - L1MEc LINE L1 -4785 1599 1136 1102 139 53 0 chr21 15889201 15889410 -19018160 - L1MA8 LINE L1 -7 6284 6065 206 283 0 0 chr21 15889433 15889493 -19018077 + (CTTTA)n Simple_repeat Simple_repeat 5 64 0 24 67 0 0 chr21 15889563 15889608 -19017962 + AT_rich Low_complexity Low_complexity 1 45 0 31 26 0 0 chr21 15889802 15889840 -19017730 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr21 15890734 15890756 -19016814 + AT_rich Low_complexity Low_complexity 1 22 0 277 231 0 0 chr21 15890761 15890813 -19016757 - MLT1I LTR MaLR -7 402 351 201 315 11 0 chr21 15891159 15891248 -19016322 + (TA)n Simple_repeat Simple_repeat 1 90 0 3435 220 38 32 chr21 15891538 15892347 -19015223 + L1 LINE L1 28 841 -6327 661 143 17 8 chr21 15892348 15892467 -19015103 + L1 LINE L1 4698 4817 -2350 19521 46 3 1 chr21 15892457 15894926 -19012644 + L1P LINE L1 2868 5342 -804 2165 155 40 5 chr21 15894926 15895342 -19012228 + L1MA5 LINE L1 5859 6298 -2 1971 145 0 16 chr21 15895353 15895670 -19011900 + AluSx SINE Alu 1 312 0 1551 184 14 20 chr21 15895887 15896181 -19011389 + AluJb SINE Alu 5 296 -16 23 0 0 0 chr21 15896232 15896255 -19011315 + AT_rich Low_complexity Low_complexity 1 23 0 741 257 0 0 chr21 15897005 15897157 -19010413 - FRAM SINE Alu -14 152 1 192 364 116 0 chr21 15897921 15898042 -19009528 + MIR3 SINE MIR 74 208 0 1620 160 108 15 chr21 15898222 15898565 -19009005 - THE1C LTR MaLR 0 375 1 636 300 4 25 chr21 15898632 15898872 -19008698 + L1ME1 LINE L1 5927 6161 -5 230 231 58 0 chr21 15899209 15899261 -19008309 + L2 LINE L2 3217 3271 -1 25 31 0 0 chr21 15899399 15899431 -19008139 + AT_rich Low_complexity Low_complexity 1 32 0 2456 144 51 21 chr21 15905101 15905574 -19001996 - LTR45B LTR ERV1 0 489 3 269 237 8 51 chr21 15905797 15905915 -19001655 + MLT2E LTR ERVL 514 626 -2 843 299 60 31 chr21 15906544 15906995 -19000575 - L1ME LINE L1 -447 5723 5260 2427 46 3 0 chr21 15907132 15907414 -19000156 + AluY SINE Alu 1 308 0 193 40 0 0 chr21 15907414 15907439 -19000131 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 235 243 0 14 chr21 15910134 15910204 -18997366 + MLT1H LTR MaLR 249 317 -232 29 0 0 0 chr21 15910610 15910639 -18996931 + AT_rich Low_complexity Low_complexity 1 29 0 2690 198 229 33 chr21 15910787 15911639 -18995931 - LTR28 LTR ERV1 -1 1019 1 29 28 0 0 chr21 15912940 15912976 -18994594 + AT_rich Low_complexity Low_complexity 1 36 0 727 335 24 11 chr21 15913787 15914074 -18993496 - L2 LINE L2 -1080 2234 1944 861 191 21 63 chr21 15915334 15915523 -18992047 + AluJb SINE Alu 113 293 -19 2049 121 3 10 chr21 15915722 15916011 -18991559 - AluSx SINE Alu -25 287 1 2830 258 37 36 chr21 15916992 15918540 -18989030 - L1MCb LINE L1 -2620 4024 2460 798 220 97 95 chr21 15918663 15918737 -18988833 - L1MCb LINE L1 -4428 2216 2144 1926 60 48 8 chr21 15918737 15918985 -18988585 + AluY SINE Alu 38 295 -16 798 220 97 95 chr21 15918985 15919722 -18987848 - L1MCb LINE L1 -4500 2144 1237 186 43 0 0 chr21 15919722 15919745 -18987825 + (TC)n Simple_repeat Simple_repeat 2 24 0 798 220 97 95 chr21 15919745 15920189 -18987381 - L1MCb LINE L1 -5407 1237 796 36 40 0 0 chr21 15920200 15920250 -18987320 + AT_rich Low_complexity Low_complexity 1 50 0 233 125 0 54 chr21 15920257 15920313 -18987257 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 1001 291 54 57 chr21 15920516 15920774 -18986796 - L1MCb LINE L1 -6105 437 179 207 0 0 0 chr21 15920774 15920797 -18986773 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1001 291 54 57 chr21 15920797 15920961 -18986609 - L1MCb LINE L1 -6363 179 16 1744 173 124 33 chr21 15920986 15921350 -18986220 - MSTA LTR MaLR -2 426 30 2376 183 29 2 chr21 15921780 15922234 -18985336 - MER41B LTR ERV1 -38 597 132 25 31 0 0 chr21 15925327 15925359 -18982211 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr21 15925636 15925661 -18981909 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr21 15925733 15925763 -18981807 + AT_rich Low_complexity Low_complexity 1 30 0 24 67 0 0 chr21 15926459 15926504 -18981066 + AT_rich Low_complexity Low_complexity 1 45 0 766 161 11 25 chr21 15926533 15926904 -18980666 + CT-rich Low_complexity Low_complexity 1 365 0 23 0 0 0 chr21 15927293 15927316 -18980254 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr21 15927335 15927367 -18980203 + AT_rich Low_complexity Low_complexity 1 32 0 243 310 95 0 chr21 15927367 15927483 -18980087 - L2 LINE L2 0 3313 3187 21 0 0 0 chr21 15927638 15927659 -18979911 + AT_rich Low_complexity Low_complexity 1 21 0 2959 108 32 0 chr21 15927666 15928109 -18979461 - L1PA11 LINE L1 -1 6173 5717 1713 308 94 30 chr21 15928270 15928661 -18978909 - L2 LINE L2 -2102 1212 848 859 220 108 20 chr21 15928661 15928845 -18978725 - MER33 DNA MER1_type -2261 324 103 239 53 0 26 chr21 15928845 15928883 -18978687 + (TTA)n Simple_repeat Simple_repeat 2 38 0 859 220 108 20 chr21 15928883 15928993 -18978577 - MER33 DNA MER1_type -2482 103 4 1713 308 94 30 chr21 15928993 15929378 -18978192 - L2 LINE L2 -2466 848 386 2546 197 52 33 chr21 15929640 15930281 -18977289 - L1MB7 LINE L1 -10 6174 5522 228 330 36 27 chr21 15930597 15930709 -18976861 - MIR SINE MIR -77 185 73 531 75 75 12 chr21 15931176 15931256 -18976314 + L1PB2 LINE L1 6030 6114 -37 2170 104 0 0 chr21 15931342 15931631 -18975939 + AluSc SINE Alu 1 289 -20 1350 108 5 5 chr21 15932737 15932941 -18974629 + L1PB2 LINE L1 5946 6149 -2 1672 142 8 15 chr21 15933948 15934216 -18973354 + AluJb SINE Alu 27 292 -20 334 341 62 90 chr21 15934577 15935389 -18972181 + L2 LINE L2 1544 2332 -982 1021 205 9 2 chr21 15936197 15936411 -18971159 + L1M3 LINE L1 5465 5674 -510 524 188 0 10 chr21 15936552 15936648 -18970922 - L1MC4 LINE L1 -1052 6990 6896 5466 102 14 1 chr21 15936721 15938053 -18969517 - L1PA8 LINE L1 -108 6064 4715 1093 117 0 0 chr21 15938051 15938222 -18969348 - L1PA8 LINE L1 -1672 4474 4304 1937 120 0 0 chr21 15938223 15938514 -18969056 - L1PA8 LINE L1 -2186 3960 3670 13617 179 23 7 chr21 15938520 15942055 -18965515 - L1 LINE L1 -1088 6477 2892 2719 6 0 13 chr21 15942376 15942694 -18964876 - L1PA3 LINE L1 0 6155 5842 4903 28 3 4 chr21 15942694 15943471 -18964099 + L1PA3 LINE L1 5077 5852 -303 1806 116 0 27 chr21 15945563 15945821 -18961749 + AluSq SINE Alu 28 278 -35 261 0 0 0 chr21 15945822 15945851 -18961719 + (TC)n Simple_repeat Simple_repeat 2 30 0 253 247 13 0 chr21 15945851 15946001 -18961569 + (TA)n Simple_repeat Simple_repeat 2 153 0 2768 183 8 63 chr21 15946098 15946147 -18961423 - MLT2B3 LTR ERVL 0 554 504 785 30 67 0 chr21 15946147 15946282 -18961288 + (TAGA)n Simple_repeat Simple_repeat 3 146 0 2768 183 8 63 chr21 15946282 15946818 -18960752 - MLT2B3 LTR ERVL -50 504 1 2423 91 0 0 chr21 15947408 15947715 -18959855 - AluSg SINE Alu -3 307 1 32 57 0 0 chr21 15949109 15949162 -18958408 + AT_rich Low_complexity Low_complexity 1 53 0 1365 105 0 21 chr21 15949164 15949354 -18958216 - AluSg/x SINE Alu -25 285 100 371 113 0 0 chr21 15949354 15949407 -18958163 + Alu SINE Alu 243 295 -5 2136 189 43 22 chr21 15949623 15950040 -18957530 + MSTB LTR MaLR 1 426 0 8157 201 19 20 chr21 15950040 15951678 -18955892 + MSTB-int LTR MaLR 1 1636 -15 2216 176 39 10 chr21 15951692 15952102 -18955468 + MSTB LTR MaLR 1 422 -4 211 150 25 0 chr21 15952321 15952361 -18955209 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 672 327 39 25 chr21 15952502 15952863 -18954707 + L1MEc LINE L1 1428 1793 -4603 241 237 52 21 chr21 15952873 15952970 -18954600 + L1MEc LINE L1 1837 1936 -4460 3793 183 29 4 chr21 15952978 15953660 -18953910 - MER50 LTR ERV1 -35 699 1 2496 123 11 8 chr21 15953662 15954050 -18953520 - MER50-int LTR ERV1 -10 7195 4933 2753 111 2 10 chr21 15954043 15954456 -18953114 - MER50-int LTR ERV1 -1053 6152 5743 6258 178 48 7 chr21 15954454 15955657 -18951913 - MER50-int LTR ERV1 -1636 5569 4317 3093 218 27 38 chr21 15955648 15956341 -18951229 - MER50-int LTR ERV1 -3732 3473 2788 6642 155 44 26 chr21 15956337 15958033 -18949537 - MER50-int LTR ERV1 -5355 1850 1 3911 169 23 11 chr21 15958151 15958859 -18948711 - MER50 LTR ERV1 -12 722 7 619 322 67 37 chr21 15958914 15959318 -18948252 + L1MEc LINE L1 1968 2383 -4013 620 225 199 0 chr21 15959611 15959762 -18947808 + Tigger3(Golem) DNA MER2_type 1 181 -2848 2824 163 32 0 chr21 15959761 15960263 -18947307 + Tigger3(Golem) DNA MER2_type 2509 3026 -3 1111 267 97 29 chr21 15960265 15960883 -18946687 + L1MEc LINE L1 2548 3207 -3008 286 64 21 0 chr21 15960917 15960964 -18946606 + L1MEc LINE L1 3284 3331 -2884 559 296 54 29 chr21 15960977 15961254 -18946316 + L1MEc LINE L1 3392 3675 -2540 288 273 0 0 chr21 15961273 15961339 -18946231 + GA-rich Low_complexity Low_complexity 5 70 0 2014 117 3 3 chr21 15962066 15962380 -18945190 - AluSx SINE Alu 0 314 1 501 148 0 0 chr21 15962771 15962852 -18944718 - AluS SINE Alu -5 306 226 231 349 26 33 chr21 15963260 15963412 -18944158 - L3 LINE CR1 -82 1495 1345 3125 46 5 3 chr21 15963971 15964360 -18943210 + L1PA7 LINE L1 5758 6147 -7 439 332 54 31 chr21 15964740 15965092 -18942478 + L1ME4a LINE L1 5556 5915 -206 1971 178 21 16 chr21 15965253 15965641 -18941929 + MLT1B LTR MaLR 1 390 0 1634 189 3 31 chr21 15967415 15967732 -18939838 + MER54B LTR ERVL 486 793 0 2371 118 28 8 chr21 15968595 15968952 -18938618 - THE1B LTR MaLR 0 364 1 282 237 53 26 chr21 15968989 15969065 -18938505 + MER2 DNA MER2_type 2 79 -265 298 242 30 0 chr21 15969066 15969132 -18938438 - MER2 DNA MER2_type -1 343 276 2193 185 39 2 chr21 15969356 15969767 -18937803 - MSTB LTR MaLR 0 426 1 2624 162 26 15 chr21 15970422 15970878 -18936692 - MLT1C LTR MaLR 0 467 7 183 156 0 0 chr21 15971187 15971219 -18936351 + T-rich Low_complexity Low_complexity 1 32 0 182 301 38 90 chr21 15971797 15971930 -18935640 + MIR SINE MIR 99 224 -38 6659 157 11 8 chr21 15972038 15974304 -18933266 - L1MA2 LINE L1 0 6304 4030 3460 191 58 1 chr21 15975365 15976253 -18931317 - LTR28 LTR ERV1 -33 987 1 3139 141 6 4 chr21 15977572 15978068 -18929502 - LOR1a LTR ERV1 0 497 1 303 213 0 0 chr21 15979031 15979106 -18928464 + (TG)n Simple_repeat Simple_repeat 2 76 0 26 0 0 0 chr21 15979223 15979249 -18928321 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr21 15979742 15979767 -18927803 + AT_rich Low_complexity Low_complexity 1 25 0 2036 123 6 25 chr21 15979927 15980244 -18927326 - AluSq SINE Alu 0 313 3 252 0 0 0 chr21 15980811 15980839 -18926731 + (T)n Simple_repeat Simple_repeat 1 28 0 485 261 64 35 chr21 15981248 15981451 -18926119 + L1MC4 LINE L1 7301 7509 -533 5691 116 30 2 chr21 15981496 15982385 -18925185 - L1PA12 LINE L1 -1 6167 5254 819 168 20 0 chr21 15982393 15982542 -18925028 + L1P LINE L1 4788 4939 -1207 711 121 0 0 chr21 15982542 15982641 -18924929 - LTR12 LTR ERV1 -133 538 440 246 243 14 0 chr21 15982644 15982718 -18924852 - LTR30 LTR ERV1 -79 643 569 1536 162 264 12 chr21 15982721 15983122 -18924448 - pTR5 LTR ERV1 -400 2038 1537 1439 192 3 3 chr21 15983156 15983453 -18924117 + L1P LINE L1 4936 5232 -914 998 168 0 25 chr21 15985548 15985751 -18921819 - L1MA4A LINE L1 -11 6292 6095 5502 217 17 8 chr21 15985768 15987111 -18920459 - L1MA2 LINE L1 -2465 3681 2327 2361 128 13 11 chr21 15987111 15987485 -18920085 + THE1C LTR MaLR 1 375 0 189 231 39 39 chr21 15988114 15988166 -18919404 - L3 LINE CR1 -6 1571 1520 1866 220 6 0 chr21 15988614 15988973 -18918597 + MLT1A1 LTR MaLR 1 361 -4 636 293 33 6 chr21 15989777 15989958 -18917612 - MER5A DNA MER1_type -3 186 1 396 264 236 0 chr21 15990001 15990145 -18917425 + LTR28 LTR ERV1 1 178 -842 401 286 17 8 chr21 15990161 15990280 -18917290 + LTR1 LTR ERV1 109 228 -557 1326 231 69 94 chr21 15990324 15991003 -18916567 + LTR28 LTR ERV1 359 1020 0 235 183 33 0 chr21 15991014 15991074 -18916496 - LTR37B LTR ERV1 -398 70 9 453 169 36 0 chr21 15991190 15991273 -18916297 + LTR41 LTR ERVL 1 86 -687 1332 88 9 70 chr21 15991622 15991850 -18915720 - L1PA11 LINE L1 0 6174 5961 2920 91 0 2 chr21 15991851 15992245 -18915325 + L1PA11 LINE L1 5582 5974 -200 412 145 0 48 chr21 15992418 15992501 -18915069 + LTR41 LTR ERVL 684 762 -11 642 13 0 0 chr21 15992684 15992759 -18914811 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 1516 230 116 31 chr21 15992796 15993428 -18914142 + LTR48 LTR ERV1 1 780 -7 303 336 63 7 chr21 15993617 15993760 -18913810 - L1ME4a LINE L1 -2 6119 5969 1156 202 53 13 chr21 15994030 15994390 -18913180 + MSTB1 LTR MaLR 1 432 0 779 249 18 9 chr21 15994973 15995198 -18912372 + L1MB2 LINE L1 5016 5242 -904 2856 165 50 43 chr21 15995233 15995900 -18911670 + L1MB2 LINE L1 5258 5928 -243 383 195 80 18 chr21 15995921 15996034 -18911536 + L1MB2 LINE L1 6045 6164 -7 258 32 0 0 chr21 15996576 15996607 -18910963 + (CA)n Simple_repeat Simple_repeat 2 32 0 1327 204 20 62 chr21 15996972 15997329 -18910241 - MLT1A1 LTR MaLR -11 354 13 2281 207 43 9 chr21 15998211 15998697 -18908873 - MLT2B3 LTR ERVL -39 500 4 6669 77 10 6 chr21 15998977 16000041 -18907529 - L1PA7 LINE L1 0 6154 5091 5876 79 20 0 chr21 16000041 16000841 -18906729 + L1PA7 LINE L1 4278 5093 -1053 29 59 0 15 chr21 16000846 16000887 -18906683 + AT_rich Low_complexity Low_complexity 1 42 -25 393 108 0 15 chr21 16000887 16000952 -18906618 + L1PA7 LINE L1 6084 6147 -7 29 59 0 15 chr21 16000952 16000978 -18906592 + AT_rich Low_complexity Low_complexity 42 67 0 225 0 0 0 chr21 16001124 16001149 -18906421 + (A)n Simple_repeat Simple_repeat 1 25 0 198 103 0 0 chr21 16001591 16001620 -18905950 + (TC)n Simple_repeat Simple_repeat 2 30 0 243 0 0 0 chr21 16003377 16003404 -18904166 + (TG)n Simple_repeat Simple_repeat 2 28 0 295 207 33 8 chr21 16006431 16006552 -18901018 + (TA)n Simple_repeat Simple_repeat 1 124 0 415 199 11 33 chr21 16006638 16006819 -18900751 + (TA)n Simple_repeat Simple_repeat 1 177 0 209 222 0 19 chr21 16006830 16006884 -18900686 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2009 175 14 41 chr21 16006884 16007301 -18900269 + Tigger2a DNA MER2_type 26 431 -3 1746 166 58 82 chr21 16007313 16007373 -18900197 - MSTB1 LTR MaLR -13 419 359 2143 111 0 13 chr21 16007373 16007688 -18899882 + AluY SINE Alu 1 311 0 1746 166 58 82 chr21 16007688 16008056 -18899514 - MSTB1 LTR MaLR -73 359 1 3015 188 32 34 chr21 16008095 16008744 -18898826 + L1M1 LINE L1 14 661 -6904 14480 188 35 40 chr21 16008721 16010134 -18897436 + L1M1 LINE L1 221 1641 -5924 351 102 0 0 chr21 16010134 16010183 -18897387 + Alu SINE Alu 1 49 -253 14480 188 35 40 chr21 16010183 16010210 -18897360 + L1M1 LINE L1 1641 1667 -5898 2137 141 0 0 chr21 16010210 16010514 -18897056 + AluY SINE Alu 1 304 -7 14480 188 35 40 chr21 16010514 16011413 -18896157 + L1M1 LINE L1 1667 2570 -4995 1905 147 6 13 chr21 16011413 16011727 -18895843 - AluSx SINE Alu 0 312 1 14480 188 35 40 chr21 16011727 16015350 -18892220 + L1M1 LINE L1 2570 6738 -827 1806 159 138 5 chr21 16015846 16016224 -18891346 - MSTA LTR MaLR 0 428 1 336 24 0 0 chr21 16016291 16016332 -18891238 + (CA)n Simple_repeat Simple_repeat 2 42 0 207 220 0 20 chr21 16016440 16016490 -18891080 + T-rich Low_complexity Low_complexity 5 53 0 808 302 72 39 chr21 16016556 16017158 -18890412 + L2 LINE L2 2501 3156 -157 213 39 0 0 chr21 16017645 16017671 -18889899 + (TG)n Simple_repeat Simple_repeat 1 26 0 1914 209 39 5 chr21 16017872 16018284 -18889286 + MSTB LTR MaLR 1 426 0 5928 174 9 17 chr21 16018754 16021052 -18886518 + L1PA11 LINE L1 986 3300 -3189 3308 102 4 0 chr21 16021052 16021502 -18886068 - MLT2A2 LTR ERVL 0 453 2 5928 174 9 17 chr21 16021502 16021631 -18885939 + L1PA11 LINE L1 3300 3428 -3061 2114 140 3 0 chr21 16021631 16021939 -18885631 + AluSq SINE Alu 3 311 -2 5928 174 9 17 chr21 16021939 16024951 -18882619 + L1PA11 LINE L1 3428 6482 -7 297 0 0 0 chr21 16024952 16024985 -18882585 + (TA)n Simple_repeat Simple_repeat 2 34 0 31 82 0 0 chr21 16026586 16026659 -18880911 + AT_rich Low_complexity Low_complexity 1 73 0 214 271 141 24 chr21 16026673 16026758 -18880812 + MER5B DNA MER1_type 84 178 0 218 310 23 69 chr21 16027734 16027821 -18879749 - L2 LINE L2 -53 3219 3137 2073 115 10 3 chr21 16027985 16028304 -18879266 + AluSx SINE Alu 1 312 0 297 326 110 8 chr21 16028335 16028599 -18878971 - L2 LINE L2 -403 2911 2621 477 0 0 0 chr21 16028621 16028674 -18878896 + (TG)n Simple_repeat Simple_repeat 1 53 0 818 276 26 50 chr21 16028704 16029045 -18878525 - L1ME3A LINE L1 -17 6153 5821 485 284 103 26 chr21 16029125 16029357 -18878213 - L1ME3A LINE L1 -1870 4276 4027 2387 85 3 0 chr21 16029374 16029680 -18877890 - AluSg SINE Alu -1 309 3 1263 162 101 58 chr21 16029693 16029971 -18877599 - AluJo SINE Alu -22 290 1 1744 170 27 24 chr21 16031489 16031865 -18875705 + L1MC3 LINE L1 7408 7784 -1 1994 141 7 3 chr21 16032155 16032452 -18875118 - AluSx SINE Alu -14 298 1 487 329 51 40 chr21 16032601 16032907 -18874663 + HERV16 LTR ERVL 2845 3157 -1905 232 167 17 17 chr21 16033832 16033892 -18873678 - L1MA8 LINE L1 -6 6285 6226 664 238 112 62 chr21 16033897 16034216 -18873354 - LTR50 LTR ERVL -42 753 326 24 32 0 0 chr21 16034920 16034951 -18872619 + AT_rich Low_complexity Low_complexity 1 31 0 315 0 0 0 chr21 16035373 16035408 -18872162 + (TTTA)n Simple_repeat Simple_repeat 1 35 0 833 181 51 6 chr21 16035409 16035586 -18871984 - L1MB2 LINE L1 -7 6164 5980 252 100 0 0 chr21 16036138 16036178 -18871392 + (TG)n Simple_repeat Simple_repeat 2 41 0 378 64 0 0 chr21 16036709 16036756 -18870814 - MLT2D LTR ERVL 0 414 368 567 135 0 0 chr21 16036778 16036874 -18870696 + (GA)n Simple_repeat Simple_repeat 1 96 0 1092 233 15 23 chr21 16036933 16037195 -18870375 - MLT2D LTR ERVL -152 262 3 1729 216 28 20 chr21 16038398 16038792 -18868778 + MLT2C1 LTR ERVL 1 397 0 201 226 113 0 chr21 16039307 16039369 -18868201 + MIR SINE MIR 137 205 -57 2151 116 0 0 chr21 16039553 16039846 -18867724 + AluSg SINE Alu 1 293 -17 966 196 82 21 chr21 16040144 16040528 -18867042 + MER31B LTR ERV1 1 445 -21 937 230 48 9 chr21 16041520 16041750 -18865820 + L1MD2 LINE L1 5804 6042 -317 810 216 161 16 chr21 16041761 16041828 -18865742 + L1MD2 LINE L1 6068 6124 -235 351 0 0 0 chr21 16041828 16041867 -18865703 + (CA)n Simple_repeat Simple_repeat 2 40 0 810 216 161 16 chr21 16041867 16042053 -18865517 + L1MD2 LINE L1 6124 6358 -1 2493 68 0 0 chr21 16042059 16042355 -18865215 + AluY SINE Alu 1 296 -15 244 282 24 12 chr21 16042392 16042477 -18865093 + L3 LINE CR1 611 696 -881 180 77 0 0 chr21 16042867 16042893 -18864677 + (CATG)n Simple_repeat Simple_repeat 1 26 0 2458 127 0 19 chr21 16043296 16043666 -18863904 - THE1B LTR MaLR 0 364 2 748 275 10 5 chr21 16043678 16043885 -18863685 - MER58A DNA MER1_type -15 209 2 299 228 130 0 chr21 16044208 16044300 -18863270 - MER5A DNA MER1_type -76 113 10 861 120 0 0 chr21 16045642 16045650 -18861920 + (CA)n Simple_repeat Simple_repeat 1 141 0 861 120 0 0 chr21 16045650 16045783 -18861787 + (CA)n Simple_repeat Simple_repeat 2 134 0 462 149 40 0 chr21 16046399 16046473 -18861097 - MER2 DNA MER2_type -1 343 267 1113 182 5 5 chr21 16046571 16046769 -18860801 - AluJb SINE Alu -31 281 84 439 229 12 0 chr21 16046769 16046852 -18860718 - MER2 DNA MER2_type -259 85 2 284 331 14 29 chr21 16046854 16046993 -18860577 + (CATATA)n Simple_repeat Simple_repeat 2 138 0 313 152 0 17 chr21 16047228 16047287 -18860283 + LTR49-int LTR ERV1 3946 4003 -2328 267 352 0 0 chr21 16048243 16048314 -18859256 + MIR SINE MIR 12 82 -180 293 275 11 11 chr21 16048359 16048450 -18859120 + MIR SINE MIR 170 260 -2 1332 89 0 0 chr21 16048952 16049120 -18858450 + AluY SINE Alu 131 298 -13 35 0 0 0 chr21 16049120 16049155 -18858415 + AT_rich Low_complexity Low_complexity 1 35 0 453 276 95 39 chr21 16050524 16050703 -18856867 + MIR SINE MIR 21 208 -54 2091 55 44 7 chr21 16051336 16051660 -18855910 - AluY SINE Alu 0 334 1 505 189 0 0 chr21 16052033 16052128 -18855442 - L1PA16 LINE L1 -2112 4034 3940 5154 191 24 7 chr21 16052123 16054217 -18853353 + L1PA16 LINE L1 4040 6166 0 190 344 11 0 chr21 16054706 16054796 -18852774 + MIR SINE MIR 138 228 -34 198 0 0 0 chr21 16054997 16055019 -18852551 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 1802 180 65 43 chr21 16055154 16055531 -18852039 + MSTA LTR MaLR 1 389 -39 2100 107 27 13 chr21 16055531 16055831 -18851739 - AluSg SINE Alu -6 304 1 1802 180 65 43 chr21 16055831 16055869 -18851701 + MSTA LTR MaLR 389 425 -3 2015 126 37 0 chr21 16056141 16056435 -18851135 + AluSq SINE Alu 1 305 -8 29 28 0 0 chr21 16056950 16056986 -18850584 + AT_rich Low_complexity Low_complexity 1 36 0 272 179 64 51 chr21 16057407 16057485 -18850085 + MER5A DNA MER1_type 86 164 -25 204 264 115 46 chr21 16057420 16057507 -18850063 - MER5A DNA MER1_type -90 99 7 2037 68 93 0 chr21 16057614 16057894 -18849676 - AluY SINE Alu -5 306 1 2428 72 0 3 chr21 16057894 16058198 -18849372 - AluY SINE Alu -8 303 1 279 0 0 0 chr21 16058420 16058451 -18849119 + (TG)n Simple_repeat Simple_repeat 2 32 0 2302 99 0 6 chr21 16058678 16058990 -18848580 - AluSq SINE Alu -3 310 1 383 298 58 53 chr21 16059096 16059304 -18848266 + MER63A DNA MER1_type 2 210 0 251 297 68 0 chr21 16059967 16060041 -18847529 - MIR SINE MIR -63 145 67 2306 78 0 0 chr21 16060079 16060375 -18847195 + AluY SINE Alu 1 296 -15 1934 161 27 21 chr21 16060735 16061108 -18846462 - THE1C LTR MaLR 0 375 1 1281 250 77 11 chr21 16061191 16061543 -18846027 - MLT1E1 LTR MaLR -1 653 279 5453 148 24 2 chr21 16062033 16063012 -18844558 - L1PA15 LINE L1 -7 6158 5162 5463 163 17 17 chr21 16065326 16066436 -18841134 - L1MA4 LINE L1 -1 6299 5188 2008 185 29 4 chr21 16066448 16067133 -18840437 - L1MA4 LINE L1 -1079 5067 4313 203 0 0 36 chr21 16067422 16067450 -18840120 + (TTAAA)n Simple_repeat Simple_repeat 3 29 0 1723 125 0 46 chr21 16068012 16068292 -18839278 + AluSg SINE Alu 35 301 -9 2225 80 6 52 chr21 16068657 16068982 -18838588 + AluSg SINE Alu 1 310 0 35 0 0 0 chr21 16069711 16069746 -18837824 + AT_rich Low_complexity Low_complexity 1 35 0 225 379 53 0 chr21 16072647 16072742 -18834828 - MER5B DNA MER1_type -1 177 78 2777 84 8 0 chr21 16072972 16073354 -18834216 - L1PA7 LINE L1 -7 6147 5763 24 32 0 0 chr21 16073434 16073465 -18834105 + AT_rich Low_complexity Low_complexity 1 31 0 639 210 41 5 chr21 16073804 16073999 -18833571 + LTR37B LTR ERV1 265 466 -2 22 70 0 0 chr21 16074178 16074221 -18833349 + AT_rich Low_complexity Low_complexity 1 43 0 2019 79 8 0 chr21 16074589 16074872 -18832698 - AluY SINE Alu 0 319 35 21 0 0 0 chr21 16075101 16075122 -18832448 + AT_rich Low_complexity Low_complexity 1 21 0 285 324 28 9 chr21 16075362 16075470 -18832100 - MER5A DNA MER1_type -77 112 3 1913 233 40 71 chr21 16075623 16076245 -18831325 + MER77 LTR ERV1 1 603 -2 822 308 3 3 chr21 16077386 16077701 -18829869 - L1MDa LINE L1 -3483 3057 2743 461 289 34 21 chr21 16077751 16077990 -18829580 - L1MDa LINE L1 -3895 2645 2404 2718 269 44 29 chr21 16078060 16078994 -18828576 + Tigger6a DNA MER2_type 2 955 -642 1626 197 10 3 chr21 16078994 16079298 -18828272 - AluJb SINE Alu -6 306 1 2718 269 44 29 chr21 16079298 16079429 -18828141 + Tigger6a DNA MER2_type 955 1083 0 5375 166 5 24 chr21 16079555 16080736 -18826834 + L1PA16 LINE L1 5007 6165 -1 2348 100 0 0 chr21 16080916 16081226 -18826344 - AluSg SINE Alu 0 310 1 251 54 27 0 chr21 16081270 16081307 -18826263 - L1P LINE L1 -1219 4927 4890 3464 31 0 0 chr21 16081307 16081720 -18825850 + L1PA4 LINE L1 5740 6152 -3 1238 325 53 18 chr21 16082219 16082957 -18824613 - L1MDa LINE L1 -5483 1238 475 1390 197 23 75 chr21 16084953 16085338 -18822232 - MLT1A1 LTR MaLR 0 365 1 2064 126 61 3 chr21 16085472 16085814 -18821756 + THE1B LTR MaLR 1 362 -2 1550 94 3 206 chr21 16086052 16086425 -18821145 - AluSg SINE Alu -3 297 1 328 331 29 43 chr21 16086529 16086668 -18820902 + MER5A DNA MER1_type 52 188 -1 1288 51 0 0 chr21 16087470 16087626 -18819944 - AluY SINE Alu 0 311 156 261 0 0 0 chr21 16088760 16088789 -18818781 + (T)n Simple_repeat Simple_repeat 1 29 0 2389 73 0 10 chr21 16090494 16090797 -18816773 + AluY SINE Alu 3 302 -9 182 242 33 88 chr21 16091338 16091429 -18816141 + MIR SINE MIR 177 262 0 2089 57 0 36 chr21 16092950 16093230 -18814340 - AluY SINE Alu -4 307 38 1202 235 90 59 chr21 16093863 16094306 -18813264 - MLT1C LTR MaLR -5 462 6 2055 190 8 2 chr21 16094719 16095119 -18812451 + L1PA16 LINE L1 5764 6165 -1 288 160 67 27 chr21 16095123 16095198 -18812372 + L1ME4a LINE L1 5966 6043 -78 201 147 0 0 chr21 16097414 16097448 -18810122 + (CA)n Simple_repeat Simple_repeat 1 34 0 4944 95 26 0 chr21 16097725 16098232 -18809338 - L1PA13 LINE L1 -2 6161 5628 2603 102 0 24 chr21 16098232 16098605 -18808965 + THE1B LTR MaLR 1 364 0 4944 95 26 0 chr21 16098605 16098826 -18808744 - L1PA13 LINE L1 -535 5628 5414 2398 199 25 14 chr21 16099206 16099884 -18807686 - L1M4 LINE L1 -405 6277 5594 732 247 30 30 chr21 16099905 16100172 -18807398 - L1M4 LINE L1 -2191 4453 4187 5051 185 25 16 chr21 16100165 16101706 -18805864 - L1PA16 LINE L1 -5 6161 4614 9817 112 18 31 chr21 16101721 16103186 -18804384 + THE1B-int LTR MaLR 133 1579 -1 2393 112 14 25 chr21 16103186 16103552 -18804018 + THE1B LTR MaLR 3 364 0 6644 215 18 13 chr21 16103553 16105035 -18802535 - L1PA15-16 LINE L1 -5592 1257 5 618 213 17 12 chr21 16105053 16105217 -18802353 - L1M4 LINE L1 -2471 4173 4014 4955 257 50 42 chr21 16105260 16108107 -18799463 - L1M4c LINE L1 -3653 2991 15 332 333 26 0 chr21 16109201 16109315 -18798255 + L2 LINE L2 3192 3308 -5 23 33 0 0 chr21 16109432 16109462 -18798108 + AT_rich Low_complexity Low_complexity 1 30 0 289 318 70 31 chr21 16109853 16109982 -18797588 - MLT1F LTR MaLR -107 435 302 303 259 119 63 chr21 16109954 16110097 -18797473 - MLT1G LTR MaLR -211 379 229 201 228 114 97 chr21 16110328 16110442 -18797128 + MIR SINE MIR 60 175 -87 802 282 14 5 chr21 16111349 16111572 -18795998 - L2 LINE L2 -1769 1545 1321 644 306 46 18 chr21 16111667 16111948 -18795622 + MLT1K LTR MaLR 300 588 0 385 295 54 30 chr21 16112174 16112340 -18795230 - MIR SINE MIR -30 232 63 2443 77 0 0 chr21 16112991 16113291 -18794279 - AluY SINE Alu -11 300 1 21 36 0 0 chr21 16113447 16113475 -18794095 + AT_rich Low_complexity Low_complexity 1 28 0 2578 182 55 6 chr21 16114095 16114585 -18792985 + MLT2B1 LTR ERVL 1 514 -6 24 0 0 0 chr21 16115666 16115690 -18791880 + AT_rich Low_complexity Low_complexity 1 24 0 3613 121 52 37 chr21 16115769 16116565 -18791005 - LTR12 LTR ERV1 0 1523 16 689 230 38 47 chr21 16116785 16117020 -18790550 - pTR5 LTR ERV1 -1463 975 743 2263 71 0 46 chr21 16117069 16117392 -18790178 + AluY SINE Alu 1 308 -3 26 30 0 0 chr21 16118260 16118293 -18789277 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr21 16118674 16118700 -18788870 + AT_rich Low_complexity Low_complexity 1 26 0 192 77 0 0 chr21 16119698 16119724 -18787846 + (T)n Simple_repeat Simple_repeat 1 26 0 2619 188 93 30 chr21 16120677 16121342 -18786228 + MER39 LTR ERV1 1 707 0 356 352 50 6 chr21 16121576 16121735 -18785835 - L2 LINE L2 -329 2984 2819 229 224 0 17 chr21 16121858 16121916 -18785654 + MER58B DNA MER1_type 1 57 -284 510 169 0 0 chr21 16121969 16122046 -18785524 + MER58B DNA MER1_type 264 340 -1 1567 188 23 10 chr21 16122404 16122708 -18784862 - AluJb SINE Alu -4 308 1 33 43 0 0 chr21 16123349 16123396 -18784174 + AT_rich Low_complexity Low_complexity 1 47 0 180 0 0 0 chr21 16125603 16125623 -18781947 + (TG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr21 16126077 16126099 -18781471 + AT_rich Low_complexity Low_complexity 1 22 0 2899 239 65 11 chr21 16126544 16127465 -18780105 + L1MB2 LINE L1 4358 5384 -796 2155 104 0 0 chr21 16127465 16127745 -18779825 + AluSq SINE Alu 3 282 -31 2899 239 65 11 chr21 16127745 16128397 -18779173 + L1MB2 LINE L1 5384 6000 -180 563 244 58 12 chr21 16128405 16128577 -18778993 + L1M4 LINE L1 4686 4865 -1281 318 264 88 0 chr21 16128640 16128765 -18778805 + L1MB2 LINE L1 6036 6171 0 9323 197 43 31 chr21 16128876 16130914 -18776656 + L1MA4 LINE L1 2131 4788 -1512 2064 108 18 4 chr21 16130914 16131215 -18776355 + AluSg SINE Alu 1 305 0 9323 197 43 31 chr21 16131215 16132005 -18775565 + L1MA4 LINE L1 4788 5567 -733 641 221 7 13 chr21 16132040 16132194 -18775376 - L1M4 LINE L1 -6384 158 6 2532 202 4 16 chr21 16132335 16132851 -18774719 + L1MA4 LINE L1 5620 6129 -171 21 36 0 0 chr21 16132851 16132879 -18774691 + AT_rich Low_complexity Low_complexity 1 28 0 5513 237 57 30 chr21 16133046 16135091 -18772479 + L1M4 LINE L1 2700 4800 -1346 1038 64 41 6 chr21 16135641 16135679 -18771891 + (GAAA)n Simple_repeat Simple_repeat 1 217 0 1038 64 41 6 chr21 16135679 16135851 -18771719 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 2460 153 20 2 chr21 16135959 16136357 -18771213 + MSTA-int LTR MaLR 1247 1651 0 2095 145 89 8 chr21 16136382 16136754 -18770816 + MSTA LTR MaLR 27 428 0 24 53 0 0 chr21 16136852 16136890 -18770680 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr21 16137004 16137035 -18770535 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr21 16137366 16137401 -18770169 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 16137799 16137821 -18769749 + AT_rich Low_complexity Low_complexity 1 22 0 2241 50 82 3 chr21 16138873 16139155 -18768415 + AluY SINE Alu 1 304 -7 21 82 0 0 chr21 16139181 16139230 -18768340 + AT_rich Low_complexity Low_complexity 1 49 0 3998 190 34 32 chr21 16139281 16140856 -18766714 - L1MB1 LINE L1 -45 6123 4545 2185 104 0 3 chr21 16141426 16141713 -18765857 - AluSq SINE Alu -27 286 1 298 184 0 0 chr21 16141835 16141884 -18765686 + (CA)n Simple_repeat Simple_repeat 1 49 0 550 252 47 65 chr21 16141884 16142098 -18765472 - MIR SINE MIR -17 245 36 778 259 66 0 chr21 16142229 16142441 -18765129 - MER46A DNA MER2_type -10 226 1 2048 160 0 0 chr21 16142683 16142995 -18764575 + AluSx SINE Alu 1 312 0 2166 149 126 5 chr21 16144354 16144797 -18762773 - L1MA4 LINE L1 -3 6297 5801 2269 137 30 2 chr21 16144796 16145019 -18762551 + L1M1 LINE L1 5369 5584 -716 240 35 0 0 chr21 16145019 16145048 -18762522 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1992 138 7 0 chr21 16145051 16145341 -18762229 + AluSx SINE Alu 21 312 0 2269 137 30 2 chr21 16145341 16145507 -18762063 + L1M1 LINE L1 5585 5773 -527 1109 232 61 3 chr21 16145571 16145864 -18761706 - L1MC3 LINE L1 -23 7762 7453 418 41 0 0 chr21 16145864 16145913 -18761657 + THE1A LTR MaLR 1 49 -306 883 79 8 0 chr21 16145913 16146040 -18761530 + THE1-int LTR MaLR 14 141 -1439 315 181 28 0 chr21 16146023 16146095 -18761475 + THE1-int LTR MaLR 1507 1580 0 260 95 24 0 chr21 16146095 16146137 -18761433 + THE1C LTR MaLR 1 43 -332 10021 107 17 1 chr21 16146137 16147532 -18760038 + THE1A-int LTR MaLR 163 1580 0 2469 107 6 3 chr21 16147532 16147886 -18759684 + THE1A LTR MaLR 1 355 0 818 217 27 5 chr21 16147886 16148070 -18759500 - L1MC3 LINE L1 -328 7457 7270 320 215 115 62 chr21 16148075 16148205 -18759365 - L1MA8 LINE L1 -25 6266 6130 6705 220 75 46 chr21 16148201 16150614 -18756956 - L1MC3 LINE L1 -508 7277 4773 189 0 0 0 chr21 16150614 16150635 -18756935 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 6705 220 75 46 chr21 16150635 16150865 -18756705 - L1MC3 LINE L1 -3012 4773 4551 1393 272 35 14 chr21 16150884 16151435 -18756135 - L1MC3 LINE L1 -1772 4374 3813 2795 13 0 0 chr21 16151844 16152152 -18755418 + AluYa5 SINE Alu 1 308 -3 1829 172 30 19 chr21 16152238 16152609 -18754961 + THE1C LTR MaLR 1 375 0 512 222 48 41 chr21 16152746 16152956 -18754614 + MER58 DNA MER1_type 1 2418 -2 1104 155 31 0 chr21 16153216 16153409 -18754161 - L1PB1 LINE L1 -1 6150 5952 12645 194 14 9 chr21 16153412 16156887 -18750683 - L1PB1 LINE L1 -244 5907 2420 1339 61 0 0 chr21 16156902 16157065 -18750505 - AluY SINE Alu -13 298 136 626 133 9 19 chr21 16157065 16157170 -18750400 + LTR1B LTR ERV1 723 826 0 413 270 78 0 chr21 16157170 16157283 -18750287 + MER67B LTR ERV1 156 277 -384 3003 163 45 34 chr21 16157303 16157986 -18749584 - LTR1B LTR ERV1 -88 697 1 2168 107 16 7 chr21 16158516 16158824 -18748746 - AluY SINE Alu 0 311 1 2079 147 0 0 chr21 16159179 16159491 -18748079 + AluSx SINE Alu 1 312 0 248 274 41 0 chr21 16161581 16161654 -18745916 - LTR33A LTR ERVL -117 406 331 2027 171 40 31 chr21 16162204 16162749 -18744821 + MLT2A2 LTR ERVL 1 551 -3 21 57 0 0 chr21 16162890 16162925 -18744645 + AT_rich Low_complexity Low_complexity 1 35 0 266 281 64 49 chr21 16162939 16163206 -18744364 - HAL1b LINE L1 -316 1032 762 693 242 73 43 chr21 16163316 16163643 -18743927 - HAL1b LINE L1 -779 569 233 2557 56 0 0 chr21 16163792 16164097 -18743473 + AluY SINE Alu 1 305 -6 37 0 0 0 chr21 16164479 16164516 -18743054 + AT_rich Low_complexity Low_complexity 1 37 0 415 375 59 19 chr21 16164742 16165062 -18742508 + L3 LINE CR1 652 984 -593 215 241 65 83 chr21 16165379 16165487 -18742083 + L3 LINE CR1 1375 1480 -97 329 127 0 36 chr21 16166246 16166301 -18741269 + MER39 LTR ERV1 655 707 0 212 68 0 114 chr21 16166482 16166526 -18741044 + (TC)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr21 16166526 16166549 -18741021 + (CA)n Simple_repeat Simple_repeat 1 23 0 291 288 8 56 chr21 16166841 16166966 -18740604 + L2 LINE L2 3195 3313 0 839 254 4 50 chr21 16166981 16167261 -18740309 - HAL1 LINE L1 -713 1794 1528 638 299 63 8 chr21 16167260 16167625 -18739945 - HAL1 LINE L1 -869 1638 1254 432 197 78 0 chr21 16167941 16168083 -18739487 - HAL1 LINE L1 -1384 1123 971 2276 71 0 4 chr21 16169092 16169403 -18738167 + AluY SINE Alu 1 310 0 1080 273 64 58 chr21 16169446 16169929 -18737641 + MLT1E2 LTR MaLR 1 486 -140 2189 131 0 0 chr21 16170002 16170315 -18737255 + AluSq SINE Alu 1 313 0 396 40 0 0 chr21 16171824 16171874 -18735696 + (TG)n Simple_repeat Simple_repeat 1 50 0 24 85 0 0 chr21 16173336 16173395 -18734175 + AT_rich Low_complexity Low_complexity 1 59 0 189 0 0 0 chr21 16174447 16174468 -18733102 + (ATG)n Simple_repeat Simple_repeat 2 22 0 1863 135 7 11 chr21 16174487 16174768 -18732802 - AluSx SINE Alu -32 280 1 835 142 0 0 chr21 16174793 16174920 -18732650 - AluSg/x SINE Alu -5 305 179 22 0 0 0 chr21 16175354 16175376 -18732194 + AT_rich Low_complexity Low_complexity 1 22 0 2317 99 6 6 chr21 16175377 16175722 -18731848 - L1PB1 LINE L1 -3 6148 5804 3228 168 39 10 chr21 16175788 16176522 -18731048 - L1MB3 LINE L1 -8 6175 5401 1864 234 26 28 chr21 16176527 16176872 -18730698 + L1 LINE L1 4806 5150 -996 2068 94 17 34 chr21 16176872 16177169 -18730401 - AluSc SINE Alu -12 297 6 2001 154 0 7 chr21 16177174 16177472 -18730098 - AluSx SINE Alu -16 296 1 1864 234 26 28 chr21 16177472 16177688 -18729882 + L1 LINE L1 5154 5372 -774 840 254 33 49 chr21 16177689 16178003 -18729567 - L1MEc LINE L1 -3649 3292 3027 2490 54 7 0 chr21 16178003 16178301 -18729269 - AluY SINE Alu -11 300 1 840 254 33 49 chr21 16178301 16178466 -18729104 - L1MEc LINE L1 -3914 3027 2861 1112 310 51 46 chr21 16179025 16179615 -18727955 - L1MEc LINE L1 -5812 611 19 186 43 0 0 chr21 16179968 16179991 -18727579 + (T)n Simple_repeat Simple_repeat 1 23 0 2421 70 0 0 chr21 16180024 16180323 -18727247 + AluY SINE Alu 2 300 -11 2387 175 47 10 chr21 16180400 16180885 -18726685 - LTR22 LTR ERVK -4 505 3 222 227 109 36 chr21 16181347 16181457 -18726113 - MIR SINE MIR -56 206 89 245 271 181 8 chr21 16182386 16182519 -18725051 + MIR SINE MIR 51 206 -56 2391 84 0 0 chr21 16182713 16183012 -18724558 - AluY SINE Alu -12 299 1 21 0 0 0 chr21 16183032 16183053 -18724517 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr21 16183215 16183243 -18724327 + AT_rich Low_complexity Low_complexity 1 28 0 531 291 82 20 chr21 16183712 16183956 -18723614 - L3 LINE CR1 -411 1166 908 22 56 0 0 chr21 16184382 16184418 -18723152 + AT_rich Low_complexity Low_complexity 1 36 0 287 194 16 54 chr21 16184428 16184557 -18723013 + (TATAA)n Simple_repeat Simple_repeat 5 128 0 256 193 0 0 chr21 16185130 16185187 -18722383 + A-rich Low_complexity Low_complexity 3 59 0 29 47 0 0 chr21 16185191 16185234 -18722336 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr21 16185321 16185347 -18722223 + AT_rich Low_complexity Low_complexity 1 26 0 1347 191 56 0 chr21 16185609 16185861 -18721709 + AluJo SINE Alu 32 297 -15 24 0 0 0 chr21 16188875 16188899 -18718671 + AT_rich Low_complexity Low_complexity 1 24 0 239 266 113 8 chr21 16188950 16189074 -18718496 + L1MC5 LINE L1 7723 7859 -102 265 329 0 0 chr21 16189244 16189323 -18718247 - L2 LINE L2 0 3313 3235 305 300 0 0 chr21 16189323 16189403 -18718167 + L1M4 LINE L1 4766 4845 -1301 239 281 74 51 chr21 16189427 16189512 -18718058 + L1M4 LINE L1 4888 4970 -1176 330 26 0 0 chr21 16189512 16189551 -18718019 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 281 74 51 chr21 16189551 16189817 -18717753 + L1M4 LINE L1 4970 5247 -899 5161 129 4 37 chr21 16190173 16191420 -18716150 - L1PA14 LINE L1 -1 6160 4924 4850 65 14 4 chr21 16191427 16192447 -18715123 + MER11A LTR ERVK 1 1266 0 6639 194 6 31 chr21 16192448 16193098 -18714472 - L1P LINE L1 -1225 4921 4256 1835 186 3 0 chr21 16193098 16193409 -18714161 - AluJb SINE Alu 0 312 1 6639 194 6 31 chr21 16193409 16193890 -18713680 - L1P LINE L1 -1890 4256 3874 2103 124 3 3 chr21 16193890 16194197 -18713373 - AluSc SINE Alu -2 307 1 6639 194 6 31 chr21 16194197 16194652 -18712918 - L1P LINE L1 -2272 3874 3409 403 313 51 68 chr21 16194674 16194968 -18712602 - MLT1H1 LTR MaLR -204 351 63 2451 84 0 0 chr21 16195009 16195307 -18712263 - AluY SINE Alu -13 298 1 257 215 109 13 chr21 16195333 16195444 -18712126 + L1ME LINE L1 5690 5818 -344 4045 167 31 42 chr21 16195522 16196330 -18711240 - L1MA8 LINE L1 -172 6119 5322 2035 131 3 0 chr21 16196330 16196654 -18710916 - AluSp SINE Alu 0 325 1 4045 167 31 42 chr21 16196654 16196861 -18710709 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr21 16197404 16197460 -18710110 + AT_rich Low_complexity Low_complexity 1 56 0 267 31 0 0 chr21 16197945 16197977 -18709593 + (CA)n Simple_repeat Simple_repeat 1 32 0 183 129 0 0 chr21 16198568 16198599 -18708971 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1986 204 13 13 chr21 16198720 16199116 -18708454 - MSTD LTR MaLR 0 396 1 311 266 0 86 chr21 16199234 16199362 -18708208 + MER5B DNA MER1_type 19 135 -43 2359 57 0 0 chr21 16200934 16201283 -18706287 + AluY SINE Alu 1 349 0 191 333 0 0 chr21 16201736 16201790 -18705780 - MIR SINE MIR -6 256 203 2355 57 3 3 chr21 16202054 16202353 -18705217 - AluY SINE Alu -12 299 1 442 306 88 0 chr21 16202615 16202775 -18704795 + MIR SINE MIR 86 259 -3 24 53 0 0 chr21 16203034 16203072 -18704498 + AT_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr21 16203272 16203300 -18704270 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 16203475 16203496 -18704074 + AT_rich Low_complexity Low_complexity 1 21 0 6021 98 22 16 chr21 16203656 16204501 -18703069 - L1PA10 LINE L1 -1 6167 5328 2192 106 0 0 chr21 16204501 16204794 -18702776 - AluSg1 SINE Alu -16 293 1 6021 98 22 16 chr21 16204794 16205637 -18701933 - L1PA10 LINE L1 -840 5328 4472 240 59 0 0 chr21 16205950 16205984 -18701586 + (GA)n Simple_repeat Simple_repeat 1 34 0 2349 141 6 0 chr21 16206155 16206517 -18701053 + THE1B LTR MaLR 1 364 0 1501 220 21 83 chr21 16206880 16207316 -18700254 + MLT2D LTR ERVL 1 409 -5 207 0 0 0 chr21 16208643 16208666 -18698904 + (CA)n Simple_repeat Simple_repeat 2 24 0 1726 112 4 0 chr21 16209202 16209444 -18698126 - AluSx SINE Alu -10 302 60 3173 76 5 2 chr21 16209444 16209879 -18697691 - L1PA8 LINE L1 -3 6169 5734 1702 134 7 34 chr21 16210264 16210556 -18697014 - AluSx SINE Alu -18 294 11 26 0 0 0 chr21 16210765 16210791 -18696779 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr21 16211625 16211666 -18695904 + AT_rich Low_complexity Low_complexity 1 41 0 2231 99 3 0 chr21 16211801 16212094 -18695476 + AluSq SINE Alu 6 299 -14 601 326 42 8 chr21 16212302 16212566 -18695004 - LTR16A1 LTR ERVL -12 445 173 231 221 0 29 chr21 16212787 16212855 -18694715 + (CCA)n Simple_repeat Simple_repeat 2 67 0 21 0 0 0 chr21 16213321 16213342 -18694228 + AT_rich Low_complexity Low_complexity 1 21 0 262 258 0 0 chr21 16213360 16213422 -18694148 - MIR SINE MIR -14 248 187 2029 148 0 0 chr21 16214381 16214701 -18692869 + AluSx SINE Alu 1 320 0 25 0 0 0 chr21 16215340 16215365 -18692205 + AT_rich Low_complexity Low_complexity 1 25 0 216 67 0 0 chr21 16215779 16215809 -18691761 + (CA)n Simple_repeat Simple_repeat 1 30 0 677 280 39 14 chr21 16216637 16216916 -18690654 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr21 16217113 16217154 -18690416 + AT_rich Low_complexity Low_complexity 1 41 0 40 73 0 0 chr21 16217626 16217708 -18689862 + AT_rich Low_complexity Low_complexity 1 82 0 192 125 0 0 chr21 16217825 16217857 -18689713 + (GA)n Simple_repeat Simple_repeat 2 33 0 204 200 0 0 chr21 16218520 16218555 -18689015 + (TG)n Simple_repeat Simple_repeat 2 36 0 27 29 0 0 chr21 16218587 16218621 -18688949 + AT_rich Low_complexity Low_complexity 1 34 0 2039 112 35 0 chr21 16218631 16218918 -18688652 - AluSp SINE Alu -16 297 1 183 42 0 0 chr21 16220515 16220539 -18687031 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4958 176 64 18 chr21 16221575 16221718 -18685852 + L1MA5 LINE L1 4553 4688 -1612 186 43 0 0 chr21 16221718 16221741 -18685829 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4958 176 64 18 chr21 16221741 16222312 -18685258 + L1MA5 LINE L1 4688 5231 -1069 243 61 0 0 chr21 16222312 16222345 -18685225 + (CAA)n Simple_repeat Simple_repeat 1 33 0 4958 176 64 18 chr21 16222345 16223283 -18684287 + L1MA5 LINE L1 5231 6272 -28 8944 113 9 2 chr21 16223283 16224561 -18683009 - HSMAR1 DNA Mariner 0 1287 1 4958 176 64 18 chr21 16224561 16224590 -18682980 + L1MA5 LINE L1 6272 6298 -2 986 214 34 4 chr21 16225080 16225318 -18682252 - Zaphod DNA AcHobo -8 4015 3771 242 326 70 16 chr21 16226688 16226817 -18680753 - L2 LINE L2 -1 3271 3136 29 0 0 0 chr21 16227045 16227074 -18680496 + AT_rich Low_complexity Low_complexity 1 29 0 726 276 5 5 chr21 16228851 16229050 -18678520 - AluSg/x SINE Alu -5 305 107 1008 259 24 43 chr21 16229240 16229739 -18677831 + MLT1H1 LTR MaLR 1 595 0 245 200 63 63 chr21 16229913 16230008 -18677562 + LTR66 LTR ERVL 173 267 -343 225 154 0 0 chr21 16230330 16230369 -18677201 + (CA)n Simple_repeat Simple_repeat 2 40 0 22 56 0 0 chr21 16230945 16230981 -18676589 + AT_rich Low_complexity Low_complexity 1 36 0 2042 121 3 16 chr21 16232196 16232501 -18675069 - AluSq SINE Alu -12 301 1 244 376 20 0 chr21 16233046 16233147 -18674423 + L2 LINE L2 3209 3311 -2 750 248 33 33 chr21 16233229 16233586 -18673984 + L2 LINE L2 2321 2755 -559 1187 332 52 15 chr21 16233776 16234237 -18673333 + L2 LINE L2 2815 3292 -21 2253 96 3 0 chr21 16234237 16234529 -18673041 + AluSc SINE Alu 1 293 -16 2202 138 5 37 chr21 16235650 16236026 -18671544 - THE1B LTR MaLR 0 364 1 217 217 0 33 chr21 16236033 16236093 -18671477 + (TAA)n Simple_repeat Simple_repeat 2 59 0 26 0 0 0 chr21 16236714 16236740 -18670830 + AT_rich Low_complexity Low_complexity 1 26 0 204 179 0 0 chr21 16239144 16239183 -18668387 + A-rich Low_complexity Low_complexity 2 40 0 223 82 0 41 chr21 16239258 16239307 -18668263 + (TTG)n Simple_repeat Simple_repeat 1 47 0 192 152 0 0 chr21 16239524 16239557 -18668013 + T-rich Low_complexity Low_complexity 4 36 0 413 125 0 12 chr21 16241105 16241185 -18666385 + (CA)n Simple_repeat Simple_repeat 2 80 0 410 36 18 0 chr21 16241244 16241300 -18666270 + (TG)n Simple_repeat Simple_repeat 2 58 0 201 132 0 0 chr21 16242088 16242126 -18665444 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 2357 138 40 40 chr21 16242170 16242598 -18664972 + MSTA LTR MaLR 1 428 0 256 143 63 0 chr21 16243619 16243682 -18663888 + T-rich Low_complexity Low_complexity 3 69 0 1498 208 0 0 chr21 16246042 16246316 -18661254 + AluJo SINE Alu 30 303 -9 613 95 0 0 chr21 16246316 16246400 -18661170 + MER72 LTR ERV1 639 722 0 191 226 0 16 chr21 16247742 16247804 -18659766 + (CATATA)n Simple_repeat Simple_repeat 6 66 0 233 204 0 0 chr21 16247814 16247868 -18659702 + L1MC4 LINE L1 6649 6702 -1340 1448 173 123 62 chr21 16247894 16248235 -18659335 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr21 16248785 16248813 -18658757 + (CA)n Simple_repeat Simple_repeat 1 28 0 4978 193 73 42 chr21 16249402 16250253 -18657317 - MER52A LTR ERV1 0 1755 932 180 0 0 0 chr21 16250253 16250273 -18657297 + (CTCTG)n Simple_repeat Simple_repeat 1 20 0 4978 193 73 42 chr21 16250273 16250915 -18656655 - MER52A LTR ERV1 -823 932 1 2425 54 0 10 chr21 16251568 16251865 -18655705 - AluY SINE Alu -17 294 1 333 156 0 0 chr21 16251903 16251980 -18655590 + (CA)n Simple_repeat Simple_repeat 2 78 0 318 188 0 0 chr21 16251980 16252028 -18655542 - FAM SINE Alu -65 110 63 2131 95 0 3 chr21 16252154 16252438 -18655132 + AluSq SINE Alu 1 283 -30 2943 193 45 62 chr21 16252902 16252994 -18654576 + L1MA9 LINE L1 5519 5611 -701 1938 148 7 0 chr21 16252994 16253285 -18654285 + AluSx SINE Alu 1 293 -19 2943 193 45 62 chr21 16253285 16253963 -18653607 + L1MA9 LINE L1 5611 6276 -36 768 176 0 22 chr21 16254318 16254454 -18653116 + AluJo/FLAM SINE Alu 1 133 -179 408 164 0 0 chr21 16254455 16254522 -18653048 + AluJ/FRAM SINE Alu 228 294 -8 223 323 10 20 chr21 16256444 16256543 -18651027 + L2 LINE L2 923 1020 -2294 1966 305 101 50 chr21 16256671 16258437 -18649133 + L2 LINE L2 1033 2957 -357 16997 91 14 3 chr21 16258563 16260838 -18646732 + HERVL-A2 LTR ERVL 3355 5654 0 2994 96 41 9 chr21 16260838 16261275 -18646295 + MLT2A2 LTR ERVL 1 451 -2 6050 172 38 51 chr21 16261277 16262609 -18644961 - THE1C-int LTR MaLR -266 1314 1 1749 149 73 25 chr21 16262612 16262967 -18644603 - THE1C LTR MaLR -3 372 1 1252 278 57 27 chr21 16263523 16264117 -18643453 + HAL1b LINE L1 1 612 -736 24 32 0 0 chr21 16265137 16265168 -18642402 + AT_rich Low_complexity Low_complexity 1 31 0 913 231 120 78 chr21 16266398 16266883 -18640687 - MLT1D LTR MaLR 0 505 1 492 262 16 8 chr21 16266901 16267023 -18640547 - L2 LINE L2 -1 3312 3190 859 215 41 50 chr21 16267030 16267249 -18640321 - MER58A DNA MER1_type -6 218 2 199 290 9 37 chr21 16267259 16267366 -18640204 - L2 LINE L2 -125 3188 3085 285 218 90 53 chr21 16267376 16267509 -18640061 - MLT1J1 LTR MaLR -19 427 290 2263 95 0 0 chr21 16267759 16268044 -18639526 + AluSx SINE Alu 1 285 -27 24109 93 16 12 chr21 16268414 16271753 -18635817 - HERVL-A2 LTR ERVL -2303 3351 1 3172 105 16 7 chr21 16271753 16272202 -18635368 - MLT2A2 LTR ERVL 0 453 1 1716 119 15 4 chr21 16272202 16272470 -18635100 + THE1C-int LTR MaLR 1310 1580 0 1639 162 80 26 chr21 16272472 16272824 -18634746 + THE1C LTR MaLR 3 373 -2 181 0 69 0 chr21 16272855 16272884 -18634686 + (TA)n Simple_repeat Simple_repeat 1 31 0 1911 225 91 13 chr21 16272884 16273333 -18634237 - MLT2B1 LTR ERVL -36 484 1 4449 186 16 10 chr21 16273376 16274206 -18633364 - ERVL-B1 LTR ERVL -235 5529 4695 1737 285 92 7 chr21 16274202 16274743 -18632827 - ERVL-B1 LTR ERVL -5173 591 5 872 266 101 28 chr21 16274747 16275158 -18632412 - MLT2B1 LTR ERVL 0 515 3 4525 228 63 40 chr21 16275198 16277209 -18630361 + L1MC3 LINE L1 3530 5581 -768 1018 108 0 0 chr21 16277214 16277353 -18630217 - AluY SINE Alu -1 310 172 2359 236 81 24 chr21 16277358 16278096 -18629474 + L1MC3 LINE L1 5584 6363 -1422 1384 216 19 41 chr21 16278100 16278420 -18629150 + MSTD LTR MaLR 84 396 0 604 88 10 10 chr21 16278420 16278522 -18629048 + (TCTA)n Simple_repeat Simple_repeat 2 103 0 2330 126 5 27 chr21 16279568 16279940 -18627630 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr21 16281190 16281261 -18626309 + AT_rich Low_complexity Low_complexity 1 71 0 1345 68 0 31 chr21 16281352 16281543 -18626027 + L1PA8 LINE L1 5987 6171 -1 225 154 0 0 chr21 16281841 16281880 -18625690 + (TATG)n Simple_repeat Simple_repeat 2 40 0 547 26 26 0 chr21 16282491 16282568 -18625002 + (TA)n Simple_repeat Simple_repeat 1 79 0 21 0 0 0 chr21 16282824 16282845 -18624725 + AT_rich Low_complexity Low_complexity 1 21 0 218 345 0 0 chr21 16283878 16283933 -18623637 + MIR SINE MIR 83 137 -125 25 0 0 0 chr21 16284019 16284044 -18623526 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr21 16284157 16284186 -18623384 + AT_rich Low_complexity Low_complexity 1 29 0 342 0 0 0 chr21 16284915 16284953 -18622617 + (TG)n Simple_repeat Simple_repeat 1 38 0 264 77 0 0 chr21 16286878 16286917 -18620653 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr21 16287868 16287893 -18619677 + AT_rich Low_complexity Low_complexity 1 25 0 2142 140 30 30 chr21 16288963 16289327 -18618243 + THE1B LTR MaLR 1 364 0 5455 137 25 15 chr21 16289329 16289633 -18617937 + THE1B-int LTR MaLR 3 303 -1277 2245 50 0 0 chr21 16289633 16289892 -18617678 - AluY SINE Alu -52 259 1 5455 137 25 15 chr21 16289892 16290660 -18616910 + THE1B-int LTR MaLR 303 1031 -549 2742 105 15 15 chr21 16290633 16291044 -18616526 + THE1B-int LTR MaLR 1170 1580 0 2112 154 28 25 chr21 16291044 16291407 -18616163 + THE1B LTR MaLR 1 364 0 294 250 24 0 chr21 16291407 16291491 -18616079 + L1M4 LINE L1 4228 4313 -1833 1747 233 64 8 chr21 16291549 16292046 -18615524 + L1M4 LINE L1 4559 5083 -1063 474 214 139 69 chr21 16293506 16293610 -18613960 - MER5A DNA MER1_type -1 188 66 2412 58 0 10 chr21 16293610 16293904 -18613666 - AluY SINE Alu -11 300 10 474 214 139 69 chr21 16293904 16293972 -18613598 - MER5A DNA MER1_type -123 66 4 21 36 0 0 chr21 16293980 16294008 -18613562 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr21 16294083 16294135 -18613435 + AT_rich Low_complexity Low_complexity 1 52 0 337 149 75 15 chr21 16294528 16294595 -18612975 - L1MC4 LINE L1 -1319 6723 6653 887 216 9 59 chr21 16295576 16295798 -18611772 + AluJb SINE Alu 88 298 -14 22 0 0 0 chr21 16297848 16297870 -18609700 + AT_rich Low_complexity Low_complexity 1 22 0 193 332 78 72 chr21 16301964 16302271 -18605299 - L2 LINE L2 -705 2609 2301 2007 129 4 0 chr21 16302304 16302614 -18604956 + AluSx SINE Alu 3 313 0 2864 143 89 0 chr21 16302868 16303352 -18604218 - MER1A DNA MER1_type -2 527 1 5922 142 20 31 chr21 16303509 16304592 -18602978 + MER11C LTR ERVK 1 1071 0 1965 163 0 0 chr21 16305154 16305460 -18602110 - AluSx SINE Alu -6 306 1 320 321 18 37 chr21 16305586 16305695 -18601875 - MIR SINE MIR -62 146 40 539 190 0 0 chr21 16308109 16308209 -18599361 + FLAM_A SINE Alu 37 136 -6 311 265 60 0 chr21 16308631 16308714 -18598856 + L1MC4 LINE L1 6615 6702 -1340 291 157 0 0 chr21 16308715 16308766 -18598804 + (TA)n Simple_repeat Simple_repeat 2 52 0 519 45 0 0 chr21 16310352 16310418 -18597152 + (CA)n Simple_repeat Simple_repeat 1 66 0 279 253 27 13 chr21 16310528 16310603 -18596967 + L2 LINE L2 2977 3052 -220 23 0 0 0 chr21 16311153 16311176 -18596394 + AT_rich Low_complexity Low_complexity 1 23 0 466 288 25 0 chr21 16311353 16311471 -18596099 + L2 LINE L2 3193 3313 0 600 261 31 0 chr21 16311937 16311952 -18595618 + MER5A DNA MER1_type 3 21 -168 203 355 77 24 chr21 16311952 16312121 -18595449 - MER5A DNA MER1_type -3 186 9 1800 148 3 23 chr21 16312231 16312535 -18595035 - AluSc SINE Alu -11 298 1 1699 100 0 0 chr21 16313239 16313459 -18594111 - AluSg SINE Alu -90 220 1 1245 27 6 27 chr21 16314026 16314209 -18593361 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 1110 64 0 0 chr21 16314211 16314367 -18593203 + (GGATG)n Simple_repeat Simple_repeat 1 156 0 553 165 75 0 chr21 16314610 16314743 -18592827 - MER63 DNA MER1_type -102 959 817 23 78 0 0 chr21 16315156 16315207 -18592363 + AT_rich Low_complexity Low_complexity 1 51 0 7569 140 12 25 chr21 16315207 16316486 -18591084 - HSMAR2 DNA Mariner -4 1298 36 7586 169 25 11 chr21 16316490 16318906 -18588664 - L1PB1 LINE L1 -21 6846 4401 3523 207 10 3 chr21 16318901 16319625 -18587945 - L1PB1 LINE L1 -3302 3560 2832 7693 159 27 3 chr21 16319638 16321147 -18586423 - L1PB1 LINE L1 -4083 2780 1093 1750 198 59 16 chr21 16321150 16321574 -18585996 - L1PB1 LINE L1 -5817 1046 605 682 285 51 8 chr21 16321601 16322116 -18585454 - L1PB1 LINE L1 -6312 551 6 261 137 20 20 chr21 16322133 16322184 -18585386 - HSMAR2 DNA Mariner -1247 55 5 256 257 0 40 chr21 16322439 16322513 -18585057 - L1ME LINE L1 -351 5813 5743 802 146 8 0 chr21 16324634 16324764 -18582806 + FLAM_C SINE Alu 1 131 -2 365 102 17 0 chr21 16326120 16326179 -18581391 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 190 271 98 74 chr21 16327091 16327213 -18580357 - MIR SINE MIR -26 236 112 2198 105 0 10 chr21 16327598 16327911 -18579659 - AluY SINE Alu -1 310 1 25 31 0 0 chr21 16327921 16327953 -18579617 + AT_rich Low_complexity Low_complexity 1 32 0 5014 72 0 0 chr21 16328165 16328816 -18578754 + L1PA8 LINE L1 5514 6164 -8 187 306 32 0 chr21 16329026 16329088 -18578482 - MER5A DNA MER1_type -114 75 12 310 239 69 50 chr21 16329138 16329297 -18578273 - L1ME4a LINE L1 -5 6116 5955 451 259 75 45 chr21 16329316 16329517 -18578053 - L1ME4a LINE L1 -224 5897 5691 298 253 11 11 chr21 16329520 16329611 -18577959 - L1ME4a LINE L1 -451 5670 5580 35 0 0 0 chr21 16329850 16329885 -18577685 + AT_rich Low_complexity Low_complexity 1 35 0 2020 112 7 0 chr21 16329897 16330174 -18577396 - AluSp SINE Alu -32 281 3 599 236 96 0 chr21 16330754 16330911 -18576659 - MLT1H1 LTR MaLR -85 539 368 234 0 0 0 chr21 16330916 16330942 -18576628 + (T)n Simple_repeat Simple_repeat 1 26 0 203 194 0 0 chr21 16331051 16331087 -18576483 + (TA)n Simple_repeat Simple_repeat 1 36 0 66 43 0 0 chr21 16331345 16331439 -18576131 + AT_rich Low_complexity Low_complexity 1 94 0 313 256 73 73 chr21 16331656 16331793 -18575777 - L1ME2 LINE L1 0 6164 6028 515 271 0 0 chr21 16331811 16331958 -18575612 - L1ME2 LINE L1 -221 5941 5792 859 235 20 10 chr21 16332060 16332256 -18575314 - L1ME2 LINE L1 -527 5635 5438 257 173 8 71 chr21 16332640 16332767 -18574803 + (TTATA)n Simple_repeat Simple_repeat 5 123 0 260 238 18 43 chr21 16332760 16332924 -18574646 + (TATAA)n Simple_repeat Simple_repeat 2 161 0 345 100 0 0 chr21 16333250 16333300 -18574270 + (ATG)n Simple_repeat Simple_repeat 2 51 0 2170 66 63 0 chr21 16334618 16334904 -18572666 + AluSg SINE Alu 1 304 -6 1255 264 29 22 chr21 16337756 16338346 -18569224 - L1MDa LINE L1 -4827 1579 853 322 318 0 0 chr21 16338347 16338432 -18569138 - L1MDa LINE L1 -5536 873 789 25 31 0 0 chr21 16339432 16339464 -18568106 + AT_rich Low_complexity Low_complexity 1 32 0 1350 202 71 34 chr21 16339519 16339871 -18567699 + MLT1A1 LTR MaLR 1 365 0 823 217 83 57 chr21 16341531 16341835 -18565735 - MLT1H1 LTR MaLR -267 328 6 309 291 0 12 chr21 16342178 16342264 -18565306 - L2 LINE L2 0 3313 3229 219 69 0 0 chr21 16343204 16343233 -18564337 + (CA)n Simple_repeat Simple_repeat 2 30 0 2317 66 36 3 chr21 16343546 16343847 -18563723 + AluY SINE Alu 1 311 0 21 36 0 0 chr21 16345592 16345620 -18561950 + AT_rich Low_complexity Low_complexity 1 28 0 3400 76 7 18 chr21 16346038 16346089 -18561481 - MLT2A2 LTR ERVL 0 453 403 216 0 0 0 chr21 16346089 16346113 -18561457 + (TA)n Simple_repeat Simple_repeat 1 24 0 3400 76 7 18 chr21 16346113 16346519 -18561051 - MLT2A2 LTR ERVL -50 403 1 526 255 45 60 chr21 16346755 16346955 -18560615 + L1ME1 LINE L1 3983 4179 -1967 26 0 0 0 chr21 16347072 16347098 -18560472 + AT_rich Low_complexity Low_complexity 1 26 0 554 227 111 40 chr21 16347180 16347405 -18560165 + MLT1C LTR MaLR 65 305 -162 3492 121 25 3 chr21 16347427 16347998 -18559572 - L1MA3 LINE L1 0 6305 5723 490 250 64 41 chr21 16348010 16348182 -18559388 + L1ME1 LINE L1 4616 4791 -1355 2075 145 135 5 chr21 16348194 16348573 -18558997 - MSTA LTR MaLR 0 428 1 672 251 43 8 chr21 16348575 16348810 -18558760 + L1ME1 LINE L1 4832 5074 -1072 2196 66 40 7 chr21 16348893 16349194 -18558376 + AluY SINE Alu 1 311 0 1778 162 11 24 chr21 16349383 16349746 -18557824 + MER47B DNA MER2_type 12 417 -1 273 65 11 6 chr21 16349818 16349871 -18557699 - MSTA LTR MaLR -27 428 364 1052 276 44 18 chr21 16349919 16350306 -18557264 + L1ME1 LINE L1 5766 6162 -4 1178 244 58 43 chr21 16350325 16350857 -18556713 + L1ME2 LINE L1 5431 5970 -194 1593 160 43 0 chr21 16350910 16351192 -18556378 - AluJb SINE Alu -14 298 5 2589 192 21 54 chr21 16351194 16351846 -18555724 + L1MC1 LINE L1 5702 6332 -1 265 248 120 38 chr21 16351913 16352046 -18555524 + L1MB8 LINE L1 6034 6177 -1 1325 115 0 5 chr21 16352239 16352448 -18555122 - L1MA3 LINE L1 0 6305 6098 24 32 0 0 chr21 16354834 16354865 -18552705 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr21 16356318 16356363 -18551207 + AT_rich Low_complexity Low_complexity 1 45 0 492 104 0 0 chr21 16357369 16357446 -18550124 - L1PB4 LINE L1 0 6156 6080 1867 152 9 12 chr21 16357695 16358031 -18549539 - L1MA3 LINE L1 -6 6299 5965 225 0 0 0 chr21 16358736 16358761 -18548809 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 407 261 54 0 chr21 16358787 16358898 -18548672 + MIR3 SINE MIR 89 205 -3 761 349 17 38 chr21 16359823 16360244 -18547326 + LTR16A LTR ERVL 13 424 -26 1975 103 4 0 chr21 16360322 16360585 -18546985 - AluSp SINE Alu -26 287 24 24 0 0 0 chr21 16360817 16360841 -18546729 + AT_rich Low_complexity Low_complexity 1 24 0 2338 88 0 3 chr21 16360993 16361287 -18546283 - AluY SINE Alu -18 293 1 928 127 0 0 chr21 16361666 16361800 -18545770 - MSTA LTR MaLR -294 134 1 8410 188 20 18 chr21 16361800 16363448 -18544122 - MSTA-int LTR MaLR 0 1651 1 2437 149 28 14 chr21 16363448 16363870 -18543700 - MSTA LTR MaLR 0 428 1 1071 245 60 23 chr21 16364429 16364694 -18542876 + Charlie8 DNA MER1_type 2 276 -2141 3294 49 0 0 chr21 16364856 16365267 -18542303 + L1PA4 LINE L1 5743 6153 -2 2014 119 0 33 chr21 16365410 16365713 -18541857 - AluSg SINE Alu -17 293 1 306 0 0 0 chr21 16365774 16365808 -18541762 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 320 310 39 31 chr21 16366020 16366149 -18541421 + L3 LINE CR1 576 705 -872 222 286 39 13 chr21 16366333 16366410 -18541160 + L3 LINE CR1 930 1008 -569 672 222 0 0 chr21 16366417 16366534 -18541036 + FLAM_C SINE Alu 1 117 -16 1935 241 50 56 chr21 16366555 16367111 -18540459 + MLT2B3 LTR ERVL 1 553 -1 834 188 75 0 chr21 16367111 16367271 -18540299 + AluJb SINE Alu 133 304 -8 198 71 0 0 chr21 16367379 16367407 -18540163 + (TGG)n Simple_repeat Simple_repeat 3 30 0 225 0 0 0 chr21 16367408 16367433 -18540137 + (TG)n Simple_repeat Simple_repeat 1 25 0 188 353 98 23 chr21 16367470 16367643 -18539927 + L3 LINE CR1 1157 1342 -235 239 250 28 14 chr21 16367924 16367996 -18539574 + LTR67 LTR ERVL 3 75 -482 25 51 0 0 chr21 16369376 16369415 -18538155 + AT_rich Low_complexity Low_complexity 1 39 0 247 149 15 60 chr21 16369886 16369953 -18537617 + MLT1D LTR MaLR 442 505 0 2096 248 23 18 chr21 16369954 16370555 -18537015 + MLT1D-int LTR MaLR 2 605 -766 756 277 11 0 chr21 16370768 16370952 -18536618 + MLT1D-int LTR MaLR 698 883 -488 707 299 33 53 chr21 16371058 16371362 -18536208 + MLT1D-int LTR MaLR 960 1257 -114 1197 249 51 44 chr21 16371579 16371989 -18535581 + MLT1D LTR MaLR 93 505 0 253 227 0 15 chr21 16372026 16372092 -18535478 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 1096 184 13 4 chr21 16372128 16372362 -18535208 - Tigger6a DNA MER2_type -39 1044 809 421 266 93 70 chr21 16372367 16372679 -18534891 + L1MD2 LINE L1 5825 6143 -216 461 244 10 4 chr21 16372701 16372822 -18534748 + L1MD2 LINE L1 6232 6330 -14 3223 222 25 32 chr21 16372823 16373052 -18534518 - Tigger6a DNA MER2_type -803 794 565 393 22 0 0 chr21 16373052 16373098 -18534472 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 2301 76 0 7 chr21 16373101 16373390 -18534180 - AluSg SINE Alu -23 287 1 3223 222 25 32 chr21 16373390 16373956 -18533614 - Tigger6a DNA MER2_type -1034 563 1 1257 192 64 62 chr21 16374102 16374476 -18533094 - THE1C LTR MaLR 0 375 1 1400 195 70 17 chr21 16376033 16376320 -18531250 - MLT1A1 LTR MaLR -51 314 13 2040 112 0 86 chr21 16378634 16378972 -18528598 + AluSx SINE Alu 1 309 -3 344 218 30 0 chr21 16378972 16379105 -18528465 + (TA)n Simple_repeat Simple_repeat 2 138 0 1593 175 2 126 chr21 16379428 16379873 -18527697 + MLT1B LTR MaLR 1 390 0 276 30 0 0 chr21 16381255 16381288 -18526282 + (TG)n Simple_repeat Simple_repeat 1 33 0 479 58 87 0 chr21 16381923 16381992 -18525578 - MADE1 DNA Mariner -5 75 1 6458 135 61 11 chr21 16382151 16383322 -18524248 + Tigger3b DNA MER2_type 1 1229 -2 660 287 16 11 chr21 16383534 16383722 -18523848 + MIR SINE MIR 74 262 0 1501 154 136 27 chr21 16383844 16384182 -18523388 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr21 16384478 16384506 -18523064 + AT_rich Low_complexity Low_complexity 1 28 0 1108 133 35 0 chr21 16385336 16385509 -18522061 + MLT1A1 LTR MaLR 187 365 0 23 78 0 0 chr21 16387305 16387356 -18520214 + AT_rich Low_complexity Low_complexity 1 51 0 2126 165 50 26 chr21 16387683 16388107 -18519463 + Tigger2a DNA MER2_type 1 434 0 232 295 93 16 chr21 16388495 16388624 -18518946 - MIR SINE MIR -2 260 122 291 308 22 0 chr21 16388902 16388993 -18518577 - MLT1J2 LTR MaLR -255 195 103 4016 197 61 45 chr21 16389599 16390296 -18517274 - MER21A LTR ERV1 0 931 215 2079 87 0 81 chr21 16390296 16390617 -18516953 - AluSc SINE Alu -10 299 5 4016 197 61 45 chr21 16390617 16390821 -18516749 - MER21A LTR ERV1 -716 215 16 1464 239 93 13 chr21 16391581 16392088 -18515482 + MLT1F LTR MaLR 1 542 0 489 330 127 9 chr21 16392192 16392413 -18515157 - MIR SINE MIR -10 252 6 24 32 0 0 chr21 16392594 16392625 -18514945 + AT_rich Low_complexity Low_complexity 1 31 0 2646 71 103 7 chr21 16392751 16393160 -18514410 + LTR7 LTR ERV1 1 448 -2 2933 114 6 21 chr21 16393162 16393628 -18513942 + HERVH LTR ERV1 1 459 -7254 14687 91 11 35 chr21 16393682 16395940 -18511630 + HERVH LTR ERV1 793 2995 -4718 910 129 27 0 chr21 16395919 16396066 -18511504 + HERVH LTR ERV1 3140 3290 -4423 3459 105 0 6 chr21 16396056 16396561 -18511009 + HERVH LTR ERV1 3492 3993 -3720 4414 121 8 3 chr21 16396565 16397219 -18510351 + HERVH LTR ERV1 4490 5146 -2567 1322 119 25 38 chr21 16397202 16397437 -18510133 + HERVH LTR ERV1 5588 5819 -1894 2424 95 45 13 chr21 16397437 16397815 -18509755 + HERVH LTR ERV1 7324 7713 0 2693 70 89 40 chr21 16397815 16398242 -18509328 + LTR7 LTR ERV1 1 448 -2 213 127 0 55 chr21 16399665 16399720 -18507850 + (TAAAA)n Simple_repeat Simple_repeat 4 55 0 288 53 0 0 chr21 16400110 16400148 -18507422 + (TG)n Simple_repeat Simple_repeat 2 39 0 2127 108 0 14 chr21 16400671 16400959 -18506611 + AluSq SINE Alu 1 284 -29 234 0 0 0 chr21 16400962 16400988 -18506582 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 454 279 58 43 chr21 16401460 16401668 -18505902 - MLT1J LTR MaLR -250 261 51 21 36 0 0 chr21 16402604 16402632 -18504938 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 16403068 16403091 -18504479 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 16403131 16403153 -18504417 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr21 16404354 16404378 -18503192 + (TA)n Simple_repeat Simple_repeat 1 24 0 662 158 13 20 chr21 16405581 16405733 -18501837 + CT-rich Low_complexity Low_complexity 3 153 0 665 203 43 0 chr21 16405736 16405874 -18501696 - FRAM SINE Alu 0 40 1 21 0 0 0 chr21 16406038 16406059 -18501511 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 16406282 16406305 -18501265 + AT_rich Low_complexity Low_complexity 1 23 0 361 335 23 95 chr21 16406507 16406770 -18500800 - L2 LINE L2 -35 3237 2994 394 356 94 29 chr21 16406799 16407173 -18500397 - L2 LINE L2 -390 2924 2527 2351 106 0 0 chr21 16407275 16407587 -18499983 + AluSx SINE Alu 1 312 0 565 154 35 14 chr21 16407594 16407737 -18499833 + GA-rich Low_complexity Low_complexity 1 146 0 1854 173 60 6 chr21 16407748 16408095 -18499475 - MSTB LTR MaLR -56 370 5 352 190 153 98 chr21 16408107 16408270 -18499300 - MER106B DNA MER1_type -43 1016 22 1389 17 23 0 chr21 16408757 16408929 -18498641 - L1P2 LINE L1 -693 5461 5286 1964 34 0 0 chr21 16408929 16409162 -18498408 + L1PA5 LINE L1 5919 6154 0 2292 171 24 30 chr21 16410829 16411297 -18496273 - L1MA8 LINE L1 -173 6118 5654 423 52 0 0 chr21 16411335 16411393 -18496177 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 21 0 0 0 chr21 16411424 16411445 -18496125 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr21 16411541 16411578 -18495992 + AT_rich Low_complexity Low_complexity 1 37 0 937 247 26 10 chr21 16412478 16412786 -18494784 + L1ME LINE L1 5254 5566 -598 1944 151 71 6 chr21 16412786 16413138 -18494432 + THE1C LTR MaLR 1 375 0 6971 116 15 31 chr21 16413141 16414552 -18493018 + THE1C-int LTR MaLR 3 1580 0 1807 179 78 6 chr21 16414554 16414901 -18492669 + THE1C LTR MaLR 3 374 -1 303 300 58 11 chr21 16415021 16415211 -18492359 + L1MA7 LINE L1 5991 6189 -102 523 128 59 59 chr21 16415214 16415316 -18492254 - MLT1D LTR MaLR -401 104 3 278 258 0 16 chr21 16415327 16415389 -18492181 + MLT1I LTR MaLR 347 407 -2 367 233 6 57 chr21 16415400 16415559 -18492011 + L1MA4A LINE L1 6153 6303 0 302 103 0 69 chr21 16415715 16415773 -18491797 - Alu SINE Alu -1 299 246 24 32 0 0 chr21 16416636 16416667 -18490903 + AT_rich Low_complexity Low_complexity 1 31 0 302 89 0 0 chr21 16417371 16417416 -18490154 - MADE1 DNA Mariner -34 46 2 1426 219 11 3 chr21 16417541 16417824 -18489746 + AluJo SINE Alu 1 285 -27 201 133 0 44 chr21 16417824 16417869 -18489701 + (TTAAA)n Simple_repeat Simple_repeat 1 43 0 1821 190 77 65 chr21 16417931 16418426 -18489144 - MLT1D LTR MaLR 0 505 5 744 220 32 61 chr21 16419266 16419492 -18488078 - MLT1B LTR MaLR 0 390 155 6604 102 19 5 chr21 16419518 16420520 -18487050 - L1MA1 LINE L1 -2 6300 5285 3411 193 19 2 chr21 16420518 16421367 -18486203 - L1 LINE L1 -2068 4078 3047 577 121 189 23 chr21 16421368 16421500 -18486070 - MLT1B LTR MaLR -215 175 22 367 330 82 41 chr21 16421531 16421849 -18485721 - MLT1J2 LTR MaLR -115 335 5 2046 243 58 8 chr21 16422066 16422704 -18484866 + L1M4 LINE L1 4302 4971 -1175 262 212 24 12 chr21 16422780 16422865 -18484705 + L1M4 LINE L1 5116 5201 -945 619 173 0 0 chr21 16422951 16423055 -18484515 + L1M4 LINE L1 4676 4779 -1367 396 292 43 43 chr21 16423691 16423737 -18483833 + L1PB4 LINE L1 65 110 -6094 2455 111 19 8 chr21 16423737 16424097 -18483473 - THE1B LTR MaLR 0 364 1 396 292 43 43 chr21 16424097 16424259 -18483311 + L1PB4 LINE L1 109 273 -5931 2324 238 8 20 chr21 16424767 16425579 -18481991 + L1PB4 LINE L1 695 1588 -4615 1505 246 11 34 chr21 16425573 16426020 -18481550 + L1PB4 LINE L1 2445 2881 -3322 1150 118 65 0 chr21 16426022 16426192 -18481378 + AluSg/x SINE Alu 130 310 0 3158 228 21 24 chr21 16426207 16427152 -18480418 + L1PB4 LINE L1 2872 3813 -2390 2163 114 11 49 chr21 16427152 16427520 -18480050 - THE1A LTR MaLR 0 355 2 11622 99 5 2 chr21 16427526 16429096 -18478474 - THE1A-int LTR MaLR -6 1574 1 2132 125 26 14 chr21 16429096 16429447 -18478123 - THE1A LTR MaLR 0 355 1 6692 192 17 14 chr21 16429447 16431827 -18475743 + L1PB4 LINE L1 3809 6199 -14 28 29 0 0 chr21 16431827 16431862 -18475708 + AT_rich Low_complexity Low_complexity 1 35 0 31 58 0 0 chr21 16431895 16431947 -18475623 + AT_rich Low_complexity Low_complexity 1 52 0 717 220 34 0 chr21 16431950 16432127 -18475443 + L1M4 LINE L1 3621 3803 -2343 754 222 12 12 chr21 16432117 16432284 -18475286 + L1M4 LINE L1 5454 5620 -564 3329 179 4 11 chr21 16432799 16433538 -18474032 + L1 LINE L1 4053 4952 -1194 874 170 58 21 chr21 16433557 16433745 -18473825 - L1 LINE L1 -1537 4609 4415 870 230 9 5 chr21 16433738 16433986 -18473584 + L1 LINE L1 4958 5206 -940 257 271 0 0 chr21 16433965 16434024 -18473546 + L1MC/D LINE L1 5502 5560 -799 6891 110 11 31 chr21 16434029 16435189 -18472381 + L1MA1 LINE L1 5167 6302 0 2499 102 16 0 chr21 16435263 16435635 -18471935 + L1PA13 LINE L1 5782 6159 -4 250 338 88 19 chr21 16435773 16435933 -18471637 - MIR SINE MIR -14 248 78 231 345 81 20 chr21 16435977 16436174 -18471396 + LTR33A LTR ERVL 11 219 -304 2167 106 0 29 chr21 16436899 16437211 -18470359 + AluSg SINE Alu 1 303 -7 2387 79 3 0 chr21 16437543 16437835 -18469735 + AluY SINE Alu 1 293 -18 2382 77 7 3 chr21 16438041 16438351 -18469219 - AluSp SINE Alu 0 313 3 198 0 0 0 chr21 16438494 16438516 -18469054 + (CAA)n Simple_repeat Simple_repeat 2 23 0 279 360 48 20 chr21 16440286 16440433 -18467137 + MIR3 SINE MIR 33 183 -25 306 375 67 18 chr21 16440807 16441138 -18466432 - L2 LINE L2 -337 2977 2631 2580 116 14 30 chr21 16442518 16442958 -18464612 - L1PA12 LINE L1 -2 6166 5734 2343 97 6 0 chr21 16443977 16444288 -18463282 + AluSq SINE Alu 1 313 0 22 0 0 0 chr21 16446461 16446483 -18461087 + AT_rich Low_complexity Low_complexity 1 22 0 382 346 15 8 chr21 16446819 16446949 -18460621 + MIR SINE MIR 20 150 -112 2991 81 22 46 chr21 16448971 16449426 -18458144 - MLT2A1 LTR ERVL 0 444 1 16145 73 18 0 chr21 16449428 16449634 -18457936 - HERVL-A1 LTR ERVL -2 5652 5451 189 0 0 0 chr21 16449634 16449655 -18457915 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 16145 73 18 0 chr21 16449655 16451527 -18456043 - HERVL-A1 LTR ERVL -203 5451 3537 2238 84 32 3 chr21 16451527 16451837 -18455733 - MLT2A1 LTR ERVL -125 319 1 820 281 64 69 chr21 16452129 16452610 -18454960 - HAL1b LINE L1 -849 499 21 24 0 0 0 chr21 16452906 16452930 -18454640 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr21 16453156 16453189 -18454381 + AT_rich Low_complexity Low_complexity 1 33 0 274 283 33 42 chr21 16455445 16455565 -18452005 - MIR SINE MIR -32 230 112 995 62 34 28 chr21 16456329 16456508 -18451062 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 265 174 29 14 chr21 16456508 16456577 -18450993 + GA-rich Low_complexity Low_complexity 4 73 0 1341 269 50 17 chr21 16456594 16457070 -18450500 - L1MC4a LINE L1 -98 7710 7219 349 289 8 23 chr21 16457113 16457130 -18450440 - L1MC4 LINE L1 -950 7092 7076 1564 144 144 28 chr21 16457130 16457456 -18450114 - THE1B LTR MaLR 0 364 1 349 289 8 23 chr21 16457456 16457566 -18450004 - L1MC4 LINE L1 -966 7076 6967 625 235 79 66 chr21 16457568 16458043 -18449527 - L1MC4a LINE L1 -951 6899 6467 595 166 0 123 chr21 16458174 16458361 -18449209 - MER53 DNA DNA -3 186 23 266 238 16 0 chr21 16458979 16459101 -18448469 + GA-rich Low_complexity Low_complexity 1 123 0 477 236 153 0 chr21 16460219 16460376 -18447194 + MIR SINE MIR 71 251 -11 24 0 0 0 chr21 16460895 16460919 -18446651 + AT_rich Low_complexity Low_complexity 1 24 0 276 305 46 38 chr21 16461741 16461872 -18445698 + L2 LINE L2 3174 3305 -8 249 216 149 0 chr21 16462569 16462643 -18444927 - L3 LINE CR1 -801 776 692 21 0 0 0 chr21 16462651 16462672 -18444898 + AT_rich Low_complexity Low_complexity 1 21 0 1289 240 64 9 chr21 16462718 16463064 -18444506 - MLT1A1 LTR MaLR 0 365 1 302 255 34 107 chr21 16463421 16463570 -18444000 - MER5A DNA MER1_type -51 138 1 184 366 12 24 chr21 16464572 16464654 -18442916 - MIR SINE MIR -169 93 13 223 286 112 106 chr21 16464836 16464997 -18442573 + L2 LINE L2 3111 3272 0 9144 119 13 6 chr21 16465081 16466407 -18441163 + L1P3 LINE L1 6 1340 -5121 2850 194 32 0 chr21 16466411 16466937 -18440633 + L1M1 LINE L1 1012 1554 -6011 753 303 21 17 chr21 16467775 16468009 -18439561 + MIR SINE MIR 1 235 -27 29 60 0 0 chr21 16468108 16468158 -18439412 + AT_rich Low_complexity Low_complexity 1 50 0 1569 158 27 79 chr21 16468264 16468593 -18438977 + AluJo SINE Alu 1 312 0 333 0 0 0 chr21 16469321 16469358 -18438212 + (CA)n Simple_repeat Simple_repeat 1 37 0 26 0 0 0 chr21 16469859 16469885 -18437685 + AT_rich Low_complexity Low_complexity 1 26 0 335 322 104 0 chr21 16472303 16472418 -18435152 + L2 LINE L2 3123 3249 -23 772 359 47 16 chr21 16472912 16473402 -18434168 + ERVL LTR ERVL 4525 5029 -735 940 296 105 39 chr21 16473931 16474418 -18433152 + LTR33 LTR ERVL 3 521 0 198 0 0 0 chr21 16474743 16474765 -18432805 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 269 256 0 0 chr21 16475421 16475507 -18432063 + HAL1 LINE L1 998 1083 -1424 289 256 68 30 chr21 16475819 16475952 -18431618 + HAL1 LINE L1 1397 1534 -973 22 56 0 0 chr21 16475982 16476018 -18431552 + AT_rich Low_complexity Low_complexity 1 36 0 212 133 44 0 chr21 16476054 16476099 -18431471 + (CATA)n Simple_repeat Simple_repeat 2 48 0 3701 175 7 1 chr21 16476379 16477054 -18430516 + L1 LINE L1 3586 4264 -1882 4144 117 18 12 chr21 16477054 16477725 -18429845 + L1MA3 LINE L1 5629 6305 0 1038 174 38 24 chr21 16478046 16478259 -18429311 - L1PA16 LINE L1 0 6166 5951 336 308 29 76 chr21 16479768 16479940 -18427630 - MIR SINE MIR -89 173 10 449 222 99 37 chr21 16480078 16480240 -18427330 + L1ME4a LINE L1 5936 6107 -14 267 67 22 22 chr21 16483913 16483958 -18423612 + L2 LINE L2 3269 3313 0 648 181 35 91 chr21 16484205 16484404 -18423166 - MER53 DNA DNA 0 189 2 21 0 0 0 chr21 16485322 16485343 -18422227 + AT_rich Low_complexity Low_complexity 1 21 0 690 165 0 0 chr21 16485784 16485899 -18421671 - MER2 DNA MER2_type -146 198 84 964 164 0 0 chr21 16485901 16486081 -18421489 - AluSg/x SINE Alu 0 317 138 594 177 21 0 chr21 16486081 16486177 -18421393 - MER2 DNA MER2_type -245 99 2 207 0 0 0 chr21 16486610 16486633 -18420937 + (CA)n Simple_repeat Simple_repeat 2 24 0 504 0 0 0 chr21 16487434 16487490 -18420080 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 273 275 28 46 chr21 16488951 16489169 -18418401 - L1MEd LINE L1 -3790 2339 2126 23 0 0 0 chr21 16489271 16489294 -18418276 + AT_rich Low_complexity Low_complexity 1 23 0 637 255 10 65 chr21 16489455 16489592 -18417978 + MER20 DNA MER1_type 31 155 -64 1601 211 59 6 chr21 16489592 16489948 -18417622 - THE1C LTR MaLR 0 375 1 637 255 10 65 chr21 16489948 16490010 -18417560 + MER20 DNA MER1_type 155 219 0 777 266 56 56 chr21 16490309 16490737 -18416833 - L1MEd LINE L1 -4866 1253 918 2158 111 0 20 chr21 16490737 16491034 -18416536 - AluSg SINE Alu -19 291 1 777 266 56 56 chr21 16491034 16491367 -18416203 - L1MEd LINE L1 -5201 918 587 525 260 119 17 chr21 16492155 16492332 -18415238 - MIR SINE MIR -58 204 10 30 36 0 18 chr21 16493635 16493654 -18413916 + AT_rich Low_complexity Low_complexity 1 19 -35 1502 76 212 8 chr21 16493654 16493904 -18413666 + AluY SINE Alu 1 301 0 30 36 0 18 chr21 16493904 16493939 -18413631 + AT_rich Low_complexity Low_complexity 19 54 0 3059 100 9 0 chr21 16494028 16494458 -18413112 + MER57B LTR ERV1 1 434 0 2051 95 13 33 chr21 16495107 16495412 -18412158 - AluSx SINE Alu -13 299 1 1971 186 43 2 chr21 16495420 16495813 -18411757 - MLT2C2 LTR ERVL -55 409 1 25 0 0 0 chr21 16495857 16495882 -18411688 + AT_rich Low_complexity Low_complexity 1 25 0 950 170 12 0 chr21 16496031 16496202 -18411368 + AluSq SINE Alu 136 308 -5 894 220 28 43 chr21 16496336 16496591 -18410979 + AluJo SINE Alu 37 287 -25 48 18 0 0 chr21 16496591 16496646 -18410924 + AT_rich Low_complexity Low_complexity 1 55 0 297 348 26 26 chr21 16497281 16497396 -18410174 + MIR SINE MIR 12 126 -136 1085 263 25 12 chr21 16497534 16497857 -18409713 - L1ME1 LINE L1 -26 6140 5814 1014 138 38 0 chr21 16497946 16498105 -18409465 - AluSc SINE Alu -20 289 125 197 0 0 67 chr21 16498111 16498141 -18409429 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 824 173 0 0 chr21 16498149 16498282 -18409288 - AluSq/x SINE Alu -180 133 1 1403 272 72 24 chr21 16498514 16499087 -18408483 + L1ME3 LINE L1 5257 5856 -306 1693 80 9 0 chr21 16499090 16499303 -18408267 - AluSc SINE Alu -9 300 86 639 277 22 0 chr21 16499303 16499487 -18408083 + L1ME3 LINE L1 5975 6162 0 25 51 0 0 chr21 16499753 16499792 -18407778 + AT_rich Low_complexity Low_complexity 1 39 0 2085 132 36 36 chr21 16501210 16501574 -18405996 - THE1B LTR MaLR 0 364 1 386 164 100 101 chr21 16503554 16503722 -18403848 - MLT1G1 LTR MaLR 0 555 368 472 240 64 47 chr21 16503767 16503938 -18403632 - MLT1G1 LTR MaLR -285 310 137 384 302 52 17 chr21 16504036 16504208 -18403362 + L2 LINE L2 1900 2077 -1237 279 197 26 26 chr21 16504315 16504391 -18403179 - MLT1A2 LTR MaLR -17 357 282 576 282 113 43 chr21 16504402 16504703 -18402867 - MLT1C LTR MaLR -123 344 23 308 260 120 83 chr21 16504719 16504961 -18402609 + L2 LINE L2 2168 2418 -896 398 332 52 26 chr21 16505230 16505498 -18402072 + L2 LINE L2 2522 2796 -518 1382 201 35 41 chr21 16507310 16507654 -18399916 - MLT1A1 LTR MaLR -19 346 5 245 229 49 139 chr21 16507871 16507924 -18399646 - MIR SINE MIR -102 160 104 1825 221 63 45 chr21 16507924 16508417 -18399153 + MLT1D LTR MaLR 1 502 -3 245 229 49 139 chr21 16508417 16508507 -18399063 - MIR SINE MIR -158 104 30 2630 206 45 12 chr21 16509035 16509632 -18397938 + L1PB4 LINE L1 5537 6153 -3 22 0 0 0 chr21 16509729 16509751 -18397819 + AT_rich Low_complexity Low_complexity 1 22 0 553 232 13 13 chr21 16510401 16510552 -18397018 + MIR SINE MIR 112 262 0 3049 128 35 72 chr21 16510660 16511284 -18396286 + L1MA5A LINE L1 5693 6293 -4 1593 181 20 13 chr21 16511313 16511617 -18395953 + AluJo SINE Alu 7 312 0 620 237 14 0 chr21 16511805 16511944 -18395626 + MER82 DNA MER2_type 1 141 -512 1942 197 27 22 chr21 16512417 16512828 -18394742 + MER82 DNA MER2_type 199 611 -42 1241 34 0 0 chr21 16512828 16512976 -18394594 - L1PA6 LINE L1 -292 5862 5715 1262 62 0 0 chr21 16512976 16513128 -18394442 + L1PA5 LINE L1 5986 6145 -9 273 256 0 35 chr21 16514151 16514237 -18393333 + MIR SINE MIR 82 164 -98 282 95 0 0 chr21 16516075 16516117 -18391453 + (CA)n Simple_repeat Simple_repeat 2 43 0 265 325 72 48 chr21 16516434 16516600 -18390970 + L1M4 LINE L1 5378 5547 -631 3693 175 34 1 chr21 16517431 16518138 -18389432 + L1MA5 LINE L1 5548 6277 -23 243 0 0 0 chr21 16519823 16519850 -18387720 + (A)n Simple_repeat Simple_repeat 1 27 0 198 152 51 0 chr21 16519861 16519920 -18387650 + (TA)n Simple_repeat Simple_repeat 2 63 0 810 173 11 73 chr21 16519930 16520041 -18387529 + MLT1C LTR MaLR 34 130 -337 1962 130 0 52 chr21 16520041 16520371 -18387199 - AluSq SINE Alu 0 313 1 810 173 11 73 chr21 16520371 16520450 -18387120 + MLT1C LTR MaLR 130 212 -255 2248 144 19 14 chr21 16520451 16520813 -18386757 - THE1B LTR MaLR 0 364 1 8239 209 22 4 chr21 16520834 16522440 -18385130 - THE1B-int LTR MaLR -14 1637 3 2078 164 39 30 chr21 16522441 16522985 -18384585 - MLT2A2 LTR ERVL 0 554 2 1449 190 20 0 chr21 16522986 16523239 -18384331 + MLT1C LTR MaLR 209 466 -1 198 0 0 0 chr21 16523705 16523727 -18383843 + (GA)n Simple_repeat Simple_repeat 1 22 0 256 200 0 0 chr21 16523984 16524034 -18383536 - MIR SINE MIR -3 259 210 419 246 74 59 chr21 16526298 16526501 -18381069 + LTR40a LTR ERVL 314 519 0 401 280 7 42 chr21 16526593 16526736 -18380834 + L2 LINE L2 1820 1957 -1357 883 155 55 3 chr21 16526766 16527030 -18380540 + Tigger2 DNA MER2_type 2360 2708 -10 255 238 16 16 chr21 16527036 16527099 -18380471 + MLT2E LTR ERVL 49 111 -517 587 283 68 36 chr21 16527246 16527525 -18380045 + MLT2E LTR ERVL 339 626 -2 442 223 84 24 chr21 16527759 16527925 -18379645 + MLT1B LTR MaLR 1 176 -214 291 93 0 0 chr21 16527925 16527968 -18379602 + (TC)n Simple_repeat Simple_repeat 1 43 0 363 23 0 0 chr21 16531499 16531543 -18376027 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 255 351 21 0 chr21 16531561 16531655 -18375915 + MIR SINE MIR 20 115 -147 380 268 84 14 chr21 16531832 16531974 -18375596 + MLT1J2 LTR MaLR 60 211 -239 3452 81 13 0 chr21 16532273 16532720 -18374850 + MLT2A2 LTR ERVL 1 453 0 20217 88 10 6 chr21 16532720 16532844 -18374726 + HERVL-A2 LTR ERVL 1 123 -5531 2257 66 0 0 chr21 16532844 16533116 -18374454 - AluY SINE Alu -3 308 37 20217 88 10 6 chr21 16533116 16535679 -18371891 + HERVL-A2 LTR ERVL 123 2698 -2956 1027 76 0 0 chr21 16535678 16535810 -18371760 + HERVL-A2 LTR ERVL 3066 3197 -2457 792 70 0 0 chr21 16535805 16535905 -18371665 + HERVL-A2 LTR ERVL 3919 4018 -1636 9252 88 0 1 chr21 16535915 16536116 -18371454 + HERVL LTR ERVL 2691 3890 -1764 14247 81 2 2 chr21 16536116 16537942 -18369628 + HERVL-A2 LTR ERVL 2891 4717 -937 1622 86 66 0 chr21 16537940 16538197 -18369373 + HERVL-A2 LTR ERVL 5379 5652 -2 2882 93 79 0 chr21 16538199 16538619 -18368951 + MLT2A2 LTR ERVL 1 453 0 290 221 52 39 chr21 16539878 16539955 -18367615 + MLT1J1 LTR MaLR 84 161 -285 294 164 0 0 chr21 16540400 16540455 -18367115 + (TA)n Simple_repeat Simple_repeat 1 55 0 227 268 0 0 chr21 16541256 16541327 -18366243 + A-rich Low_complexity Low_complexity 1 71 0 4593 234 76 24 chr21 16542504 16542633 -18364937 + L1M4 LINE L1 20 141 -6401 192 97 0 0 chr21 16542633 16542664 -18364906 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4593 234 76 24 chr21 16542664 16543902 -18363668 + L1M4 LINE L1 141 1458 -5084 1512 245 10 5 chr21 16543921 16544338 -18363232 + L1M4 LINE L1 1527 1945 -4701 366 306 10 0 chr21 16544351 16544449 -18363121 + L1M4 LINE L1 1938 2036 -4610 2022 286 50 16 chr21 16544450 16545069 -18362501 + MER76 LTR ERV 24 663 -25 2156 115 0 50 chr21 16545093 16545414 -18362156 + AluSg SINE Alu 6 310 0 230 125 21 0 chr21 16545884 16545932 -18361638 + (TA)n Simple_repeat Simple_repeat 2 50 0 303 330 0 42 chr21 16545943 16546061 -18361509 + L1M4 LINE L1 1988 2100 -4544 360 167 0 0 chr21 16546063 16546123 -18361447 + MER76 LTR ERV 1 60 -628 222 118 0 0 chr21 16546128 16546162 -18361408 + (TA)n Simple_repeat Simple_repeat 2 35 0 291 93 0 0 chr21 16546214 16546257 -18361313 + (TA)n Simple_repeat Simple_repeat 2 44 0 2569 246 22 9 chr21 16546257 16547073 -18360497 + L1M4 LINE L1 2611 3437 -3207 309 254 45 36 chr21 16547086 16547196 -18360374 + LTR40b LTR ERVL 25 135 -327 1709 142 81 42 chr21 16548078 16548438 -18359132 + THE1C LTR MaLR 1 374 -1 9481 125 44 17 chr21 16548440 16549977 -18357593 + THE1C-int LTR MaLR 2 1580 0 2040 150 16 47 chr21 16549977 16550364 -18357206 + THE1C LTR MaLR 1 375 0 297 216 32 112 chr21 16550839 16550964 -18356606 - L2 LINE L2 -8 3305 3191 215 95 32 32 chr21 16551019 16551082 -18356488 + (TATAA)n Simple_repeat Simple_repeat 4 66 0 1142 231 85 67 chr21 16551347 16551736 -18355834 + MSTD LTR MaLR 1 396 0 1246 219 92 8 chr21 16551765 16552125 -18355445 - L1MD1 LINE L1 0 6242 5853 1524 247 47 3 chr21 16552118 16552656 -18354914 - L1M4c LINE L1 -4523 1780 978 5133 248 55 26 chr21 16552715 16553923 -18353647 - L1MDa LINE L1 -1902 4638 3466 1437 229 7 0 chr21 16553923 16554224 -18353346 + AluJb SINE Alu 1 303 -9 5133 248 55 26 chr21 16554224 16555583 -18351987 - L1MDa LINE L1 -3074 3466 2005 536 213 63 75 chr21 16555619 16555793 -18351777 + MLT1B LTR MaLR 10 181 -209 228 149 0 0 chr21 16555798 16555845 -18351725 + (TC)n Simple_repeat Simple_repeat 2 48 0 270 0 0 0 chr21 16555846 16555876 -18351694 + (CA)n Simple_repeat Simple_repeat 1 30 0 685 239 50 11 chr21 16555879 16556059 -18351511 + MLT1B LTR MaLR 202 388 -2 1508 232 67 24 chr21 16556059 16556521 -18351049 - L1MDa LINE L1 -4529 2011 1530 743 269 57 3 chr21 16556524 16556807 -18350763 - L1MDa LINE L1 -5134 1409 1112 319 233 139 0 chr21 16556813 16556899 -18350671 - L1MDa LINE L1 -5459 1081 984 2460 282 40 7 chr21 16556913 16557769 -18349801 - L1MDa LINE L1 -5604 936 21 180 200 0 0 chr21 16559620 16559665 -18347905 + (CA)n Simple_repeat Simple_repeat 1 45 0 355 376 0 0 chr21 16559691 16559808 -18347762 - L2 LINE L2 -15 3257 3141 8061 78 4 4 chr21 16560035 16561106 -18346464 - MER11C LTR ERVK 0 1071 1 258 262 155 0 chr21 16561221 16561305 -18346265 + Ricksha DNA DNA 250 346 -1700 761 266 98 68 chr21 16561534 16561902 -18345668 + MLT2F LTR ERVL 285 663 0 591 89 0 0 chr21 16561952 16562031 -18345539 + AluSc SINE Alu 219 297 -12 1508 219 43 19 chr21 16563090 16563465 -18344105 + MLT1B LTR MaLR 3 386 -4 328 273 47 16 chr21 16563747 16563875 -18343695 - L1MC4 LINE L1 -1 8041 7910 311 270 22 11 chr21 16563930 16564019 -18343551 - L1MC4 LINE L1 -148 7894 7805 423 141 0 0 chr21 16565668 16565746 -18341824 + (TA)n Simple_repeat Simple_repeat 1 78 0 1594 183 10 14 chr21 16565760 16566050 -18341520 + AluJo SINE Alu 11 299 -13 21 57 0 0 chr21 16567210 16567245 -18340325 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 16567331 16567353 -18340217 + AT_rich Low_complexity Low_complexity 1 22 0 282 29 0 0 chr21 16568074 16568109 -18339461 + (TA)n Simple_repeat Simple_repeat 2 36 0 2292 103 0 3 chr21 16572619 16572920 -18334650 - AluY SINE Alu -11 300 1 1763 126 73 65 chr21 16574347 16574554 -18333016 - THE1C LTR MaLR 0 375 162 2598 118 0 0 chr21 16574554 16574918 -18332652 + THE1B LTR MaLR 1 364 0 1763 126 73 65 chr21 16574918 16575082 -18332488 - THE1C LTR MaLR -213 162 1 1925 135 3 49 chr21 16575205 16575530 -18332040 + AluSx SINE Alu 1 310 -2 1984 137 27 0 chr21 16578477 16578769 -18328801 + AluSx SINE Alu 1 300 -12 523 169 8 52 chr21 16578829 16579080 -18328490 + CT-rich Low_complexity Low_complexity 1 239 0 2103 117 0 0 chr21 16579380 16579663 -18327907 - AluY SINE Alu -28 283 1 358 289 94 50 chr21 16580410 16580590 -18326980 - L2 LINE L2 -956 2358 2171 327 309 41 0 chr21 16581769 16581866 -18325704 - MLT1G3 LTR MaLR -213 317 217 225 94 0 0 chr21 16581937 16581969 -18325601 + (GA)n Simple_repeat Simple_repeat 2 33 0 378 289 9 9 chr21 16581977 16582091 -18325479 - MLT1G3 LTR MaLR -411 119 6 258 313 0 0 chr21 16582455 16582522 -18325048 + CT-rich Low_complexity Low_complexity 3 69 0 1540 37 0 0 chr21 16584702 16584892 -18322678 - L1P LINE L1 -1703 4443 4254 3019 27 40 11 chr21 16584892 16585250 -18322320 + L1PA3 LINE L1 5768 6151 -4 201 39 0 0 chr21 16585254 16585280 -18322290 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr21 16585913 16585945 -18321625 + AT_rich Low_complexity Low_complexity 1 32 0 238 226 34 34 chr21 16586135 16586281 -18321289 + (TA)n Simple_repeat Simple_repeat 1 146 0 855 88 0 0 chr21 16586725 16586838 -18320732 - L1PA13 LINE L1 -228 5935 5823 1379 111 5 0 chr21 16586838 16587053 -18320517 + L1PA13 LINE L1 5947 6163 0 297 0 0 0 chr21 16588211 16588244 -18319326 + (TG)n Simple_repeat Simple_repeat 2 34 0 703 269 6 6 chr21 16588925 16589092 -18318478 - MER5B DNA MER1_type -4 174 8 419 274 131 0 chr21 16589286 16589439 -18318131 + MIR SINE MIR 2 174 -88 23 0 0 0 chr21 16589959 16589982 -18317588 + AT_rich Low_complexity Low_complexity 1 23 0 222 163 0 23 chr21 16590271 16590314 -18317256 + (TTTAA)n Simple_repeat Simple_repeat 5 46 0 417 236 28 0 chr21 16590389 16590495 -18317075 - MER58B DNA MER1_type -1 340 232 928 249 48 31 chr21 16590519 16590808 -18316762 + MLT1D LTR MaLR 1 294 -211 5517 198 44 18 chr21 16590809 16592151 -18315419 - L1MB1 LINE L1 -47 6357 4940 606 219 30 0 chr21 16592151 16592320 -18315250 - L1MA7 LINE L1 0 6291 6118 5517 198 44 18 chr21 16592320 16593152 -18314418 - L1MB1 LINE L1 -1464 4940 4131 513 229 18 0 chr21 16593176 16593285 -18314285 - MLT1A1 LTR MaLR -4 370 260 631 153 0 0 chr21 16593307 16593405 -18314165 - MLT1A1 LTR MaLR -265 100 3 1619 205 69 6 chr21 16593407 16593768 -18313802 - L1MB1 LINE L1 -2282 4100 3717 268 108 45 27 chr21 16593770 16593881 -18313689 + (TA)n Simple_repeat Simple_repeat 2 114 0 398 55 49 68 chr21 16593898 16594061 -18313509 + (TA)n Simple_repeat Simple_repeat 1 160 0 258 210 30 54 chr21 16594126 16594293 -18313277 + (TTATA)n Simple_repeat Simple_repeat 5 167 0 267 181 11 21 chr21 16594310 16594404 -18313166 + (TA)n Simple_repeat Simple_repeat 1 93 0 3612 247 47 62 chr21 16594410 16595722 -18311848 - L1MB1 LINE L1 -2819 3563 2234 387 0 0 0 chr21 16595722 16595765 -18311805 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2068 97 0 7 chr21 16595775 16596053 -18311517 - AluSq SINE Alu -35 278 3 3612 247 47 62 chr21 16596053 16596424 -18311146 - L1MB1 LINE L1 -4157 2225 1850 2125 131 3 0 chr21 16596424 16596729 -18310841 - AluSx SINE Alu -6 306 1 3612 247 47 62 chr21 16596729 16597302 -18310268 - L1MB1 LINE L1 -4532 1850 1263 282 193 0 0 chr21 16597302 16597359 -18310211 + (TA)n Simple_repeat Simple_repeat 1 57 0 345 292 0 0 chr21 16597364 16597453 -18310117 - L1MC4 LINE L1 -1339 6703 6615 1128 128 0 0 chr21 16597465 16597644 -18309926 + (TA)n Simple_repeat Simple_repeat 2 180 0 2625 254 69 27 chr21 16597647 16598428 -18309142 - L1M3d LINE L1 -4651 1240 427 5831 183 27 26 chr21 16598558 16600071 -18307499 - L1MA3 LINE L1 0 7724 6214 216 97 0 0 chr21 16600071 16600102 -18307468 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1590 191 3 11 chr21 16600105 16600387 -18307183 - AluSx SINE Alu -30 282 3 5831 183 27 26 chr21 16600387 16602720 -18304850 - L1MA3 LINE L1 -1511 6213 3752 1283 200 21 67 chr21 16602761 16602916 -18304654 - L1MA3 LINE L1 -3785 3780 3620 1891 148 20 3 chr21 16602916 16603221 -18304349 - AluSx SINE Alu 0 312 3 1283 200 21 67 chr21 16603221 16603642 -18303928 - L1MA3 LINE L1 -3945 3620 3238 28 29 0 0 chr21 16603671 16603706 -18303864 + AT_rich Low_complexity Low_complexity 1 35 0 9502 197 24 16 chr21 16603730 16606899 -18300671 - L1PB2 LINE L1 0 6208 3017 921 221 11 6 chr21 16606898 16607079 -18300491 - L1PB2 LINE L1 -6013 191 10 579 212 0 0 chr21 16607136 16607249 -18300321 - L1MA3 LINE L1 -5330 2236 2124 2673 75 0 55 chr21 16608131 16608530 -18299040 + MER51B LTR ERV1 1 377 0 1881 139 0 4 chr21 16608531 16608797 -18298773 + AluSx SINE Alu 32 296 -16 271 342 27 20 chr21 16609322 16609468 -18298102 + MIR SINE MIR 106 252 -10 191 227 0 0 chr21 16609481 16609525 -18298045 - MIR SINE MIR -97 165 122 227 175 0 0 chr21 16609546 16609586 -18297984 - L2 LINE L2 -5 3267 3228 661 327 69 39 chr21 16609779 16610295 -18297275 - L2 LINE L2 -303 3010 2478 673 340 87 25 chr21 16610412 16610847 -18296723 - L2 LINE L2 -1002 2312 1851 381 275 68 30 chr21 16611454 16611690 -18295880 - L1ME LINE L1 -357 5764 5520 335 130 0 14 chr21 16613486 16613555 -18294015 + (TG)n Simple_repeat Simple_repeat 1 68 0 343 298 84 30 chr21 16613816 16613947 -18293623 + MIR SINE MIR 98 235 -27 1532 107 52 0 chr21 16614527 16614798 -18292772 + L1MA9 LINE L1 6028 6312 0 1894 290 68 31 chr21 16615645 16616421 -18291149 - L2 LINE L2 -896 2418 1614 304 318 55 20 chr21 16616433 16616634 -18290936 - L2 LINE L2 -820 2494 2287 204 186 0 47 chr21 16617171 16617214 -18290356 + MER5A DNA MER1_type 127 167 -22 195 304 0 43 chr21 16617172 16617241 -18290329 - MER5A DNA MER1_type -116 73 8 915 149 24 48 chr21 16618190 16618398 -18289172 - L1MA3 LINE L1 -180 6125 5923 779 177 0 0 chr21 16618398 16618527 -18289043 + L1MA3 LINE L1 6159 6305 0 306 0 0 0 chr21 16619348 16619382 -18288188 + (TG)n Simple_repeat Simple_repeat 1 34 0 292 179 12 12 chr21 16619713 16619797 -18287773 + CT-rich Low_complexity Low_complexity 2 85 0 789 244 171 41 chr21 16620324 16620664 -18286906 - MLT1D LTR MaLR -119 386 3 2021 135 10 7 chr21 16620693 16620997 -18286573 - AluSx SINE Alu -7 305 1 248 290 43 0 chr21 16621299 16621368 -18286202 - MIR SINE MIR -32 230 159 535 216 32 16 chr21 16621484 16621609 -18285961 + MLT1L LTR MaLR 151 277 -338 1005 159 102 10 chr21 16621615 16621940 -18285630 - MLT1B LTR MaLR 0 390 1 2230 152 0 23 chr21 16622556 16622702 -18284868 + L1PA14 LINE L1 5766 5914 -247 2312 112 22 30 chr21 16622702 16623069 -18284501 + THE1B LTR MaLR 1 364 0 2230 152 0 23 chr21 16623069 16623317 -18284253 + L1PA14 LINE L1 5914 6151 -10 21 0 0 0 chr21 16623700 16623721 -18283849 + AT_rich Low_complexity Low_complexity 1 21 0 1051 276 110 36 chr21 16624261 16624678 -18282892 + MLT1H LTR MaLR 57 504 -45 2113 148 3 61 chr21 16624678 16625057 -18282513 + LTR18A LTR ERVL 1 357 0 2131 205 27 20 chr21 16625083 16625522 -18282048 + HERVL18 LTR ERVL 9 450 -5597 1974 176 44 30 chr21 16625520 16626107 -18281463 + HERVL18 LTR ERVL 1150 1809 -4238 1325 126 65 1 chr21 16626108 16626391 -18281179 + HERVL18 LTR ERVL 2120 2452 -3595 5287 169 20 2 chr21 16626390 16627235 -18280335 + HERVL18 LTR ERVL 2720 3579 -2468 2720 165 2 0 chr21 16627237 16627662 -18279908 + HERVL18 LTR ERVL 4394 4819 -1228 1444 197 0 16 chr21 16627749 16627998 -18279572 + LTR18A LTR ERVL 1 245 -112 750 206 12 8 chr21 16628020 16628181 -18279389 + LTR18A LTR ERVL 208 614 0 21 57 0 0 chr21 16629572 16629607 -18277963 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 16630491 16630519 -18277051 + AT_rich Low_complexity Low_complexity 1 28 0 1988 132 105 15 chr21 16630754 16631088 -18276482 + THE1B LTR MaLR 1 364 0 2587 95 20 0 chr21 16631101 16631458 -18276112 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr21 16632162 16632190 -18275380 + AT_rich Low_complexity Low_complexity 1 28 0 2394 57 3 13 chr21 16633586 16633900 -18273670 + AluY SINE Alu 1 311 0 27 29 0 0 chr21 16633937 16633971 -18273599 + AT_rich Low_complexity Low_complexity 1 34 0 1887 188 28 5 chr21 16634226 16634626 -18272944 + L1MA8 LINE L1 5880 6288 -3 33 25 0 0 chr21 16635062 16635102 -18272468 + AT_rich Low_complexity Low_complexity 1 40 0 2288 179 48 38 chr21 16635499 16635997 -18271573 - MLT1D LTR MaLR -2 503 1 1001 217 115 66 chr21 16636786 16637197 -18270373 - MLT1F1 LTR MaLR 0 567 178 2524 143 11 45 chr21 16637197 16637579 -18269991 + Tigger2a DNA MER2_type 1 394 -2314 2162 73 13 27 chr21 16637579 16637879 -18269691 + AluY SINE Alu 1 296 -15 189 0 0 0 chr21 16637879 16637900 -18269670 + (TA)n Simple_repeat Simple_repeat 1 21 0 2524 143 11 45 chr21 16637900 16637964 -18269606 + Tigger2a DNA MER2_type 392 433 -1 1001 217 115 66 chr21 16637964 16637986 -18269584 - MLT1F1 LTR MaLR -389 178 159 2046 153 40 8 chr21 16637986 16638339 -18269231 - THE1B LTR MaLR 0 364 1 1001 217 115 66 chr21 16638339 16638438 -18269132 - MLT1F1 LTR MaLR -408 159 5 2581 220 29 46 chr21 16638558 16639216 -18268354 - MER67B LTR ERV1 -4 657 11 354 247 0 54 chr21 16639210 16639303 -18268267 - MER67A LTR ERV1 -455 88 1 1363 191 21 56 chr21 16640315 16640514 -18267056 - L1MA9 LINE L1 -24 6288 6104 2200 93 34 0 chr21 16640514 16640805 -18266765 - AluSq SINE Alu -4 309 9 1363 191 21 56 chr21 16640805 16640945 -18266625 - L1MA9 LINE L1 -208 6104 5961 243 364 56 17 chr21 16641836 16642067 -18265503 + L2 LINE L2 1770 2009 -1305 22 0 0 0 chr21 16644004 16644026 -18263544 + AT_rich Low_complexity Low_complexity 1 22 0 2745 19 0 19 chr21 16645322 16645639 -18261931 - AluY SINE Alu 0 311 1 5688 121 39 18 chr21 16645684 16646013 -18261557 + L1MA3 LINE L1 5352 5673 -632 1579 214 0 7 chr21 16646013 16646308 -18261262 - AluJb SINE Alu -19 293 1 5688 121 39 18 chr21 16646308 16646913 -18260657 + L1MA3 LINE L1 5673 6305 0 183 42 0 0 chr21 16647636 16647660 -18259910 + (T)n Simple_repeat Simple_repeat 1 24 0 342 0 0 0 chr21 16648774 16648812 -18258758 + (TG)n Simple_repeat Simple_repeat 1 38 0 192 354 46 15 chr21 16649252 16649382 -18258188 - L2 LINE L2 -1000 2314 2181 799 312 13 0 chr21 16650823 16651057 -18256513 - MIR SINE MIR -25 237 1 21 0 0 0 chr21 16651492 16651513 -18256057 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 16652122 16652155 -18255415 + AT_rich Low_complexity Low_complexity 1 33 0 252 268 0 56 chr21 16652410 16652481 -18255089 - L2 LINE L2 0 3313 3247 304 250 0 96 chr21 16652770 16652874 -18254696 - MER5B DNA MER1_type -82 96 3 21 71 0 0 chr21 16653159 16653201 -18254369 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr21 16653815 16653847 -18253723 + AT_rich Low_complexity Low_complexity 1 32 0 1683 177 14 11 chr21 16656141 16656424 -18251146 - AluJo SINE Alu -24 288 5 2166 152 22 0 chr21 16659856 16660212 -18247358 + THE1B LTR MaLR 1 364 0 2307 91 0 0 chr21 16660999 16661286 -18246284 - AluSg SINE Alu -23 287 1 790 227 71 4 chr21 16661742 16661980 -18245590 - MER58D DNA MER1_type -8 378 125 616 239 120 77 chr21 16663131 16663574 -18243996 - LTR40b LTR ERVL 0 462 1 2772 13 0 0 chr21 16663718 16664021 -18243549 - AluYa5 SINE Alu -8 303 1 332 229 43 0 chr21 16664181 16664251 -18243319 - MLT1J LTR MaLR -331 180 108 24 0 0 0 chr21 16664964 16664988 -18242582 + AT_rich Low_complexity Low_complexity 1 24 0 807 225 58 34 chr21 16665434 16665730 -18241840 + MER33 DNA MER1_type 1 292 -32 2062 112 0 14 chr21 16666002 16666307 -18241263 - AluSx SINE Alu 0 301 1 198 0 0 0 chr21 16667636 16667658 -18239912 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1541 195 60 24 chr21 16668647 16669027 -18238543 - MSTD LTR MaLR -2 394 1 239 274 0 0 chr21 16669122 16669173 -18238397 + (TG)n Simple_repeat Simple_repeat 2 52 0 989 149 6 0 chr21 16669518 16669693 -18237877 + (TA)n Simple_repeat Simple_repeat 1 176 0 842 21 0 0 chr21 16669695 16669791 -18237779 - L1PA5 LINE L1 -16 6138 6043 262 283 65 65 chr21 16672242 16672380 -18235190 - L2 LINE L2 -2 3270 3133 491 279 16 0 chr21 16674668 16674790 -18232780 + MSTD LTR MaLR 3 126 -302 941 203 62 0 chr21 16674821 16674998 -18232572 + MSTD LTR MaLR 209 396 0 187 245 20 0 chr21 16675910 16675959 -18231611 - MIR3 SINE MIR -4 204 155 1559 114 91 117 chr21 16677235 16677620 -18229950 + THE1C LTR MaLR 1 375 0 604 240 0 28 chr21 16680860 16681039 -18226531 + MER5B DNA MER1_type 3 176 -2 276 240 8 107 chr21 16681131 16681252 -18226318 + MIR SINE MIR 79 187 -75 28 29 0 0 chr21 16681484 16681519 -18226051 + AT_rich Low_complexity Low_complexity 1 35 0 2184 115 20 3 chr21 16682176 16682481 -18225089 - AluSx SINE Alu -2 310 1 232 338 44 29 chr21 16682973 16683086 -18224484 - L2 LINE L2 -7 3306 3189 989 193 13 53 chr21 16683086 16683314 -18224256 - MER20 DNA MER1_type 0 219 1 232 338 44 29 chr21 16683314 16683336 -18224234 - L2 LINE L2 -124 3189 3169 249 318 42 101 chr21 16684225 16684442 -18223128 - L2 LINE L2 -177 3095 2892 316 270 60 10 chr21 16684478 16684578 -18222992 - MIR SINE MIR -2 260 156 285 155 0 0 chr21 16685913 16685971 -18221599 + (TG)n Simple_repeat Simple_repeat 2 59 0 525 308 25 46 chr21 16687271 16687508 -18220062 - LTR16A LTR ERVL -40 410 179 1383 229 49 111 chr21 16689382 16689932 -18217638 + LTR40a LTR ERVL 4 519 0 507 311 116 13 chr21 16691113 16691338 -18216232 + MIR SINE MIR 5 252 -10 2102 121 93 9 chr21 16691666 16691998 -18215572 + THE1B LTR MaLR 3 362 -2 493 289 121 80 chr21 16692004 16692391 -18215179 + L2 LINE L2 2869 3271 -1 228 233 44 33 chr21 16693227 16693317 -18214253 + MER5A DNA MER1_type 97 187 -2 21 36 0 0 chr21 16694636 16694664 -18212906 + AT_rich Low_complexity Low_complexity 1 28 0 1884 118 8 0 chr21 16694814 16695115 -18212455 + AluSx SINE Alu 17 319 0 2269 98 7 0 chr21 16696191 16696486 -18211084 - AluSg SINE Alu -13 297 1 318 244 145 0 chr21 16697065 16697196 -18210374 + L1MEc LINE L1 794 943 -5453 355 294 62 40 chr21 16697422 16697599 -18209971 + L1ME3A LINE L1 5934 6114 -56 2147 160 17 3 chr21 16698413 16698763 -18208807 + MLT2D LTR ERVL 2 356 -58 745 203 33 52 chr21 16698781 16698993 -18208577 + L1MA9 LINE L1 6061 6268 -44 323 145 48 0 chr21 16699078 16699140 -18208430 + MLT2D LTR ERVL 456 520 0 510 207 96 59 chr21 16699283 16699418 -18208152 + MLT1H LTR MaLR 1 140 -409 445 193 68 0 chr21 16699677 16699765 -18207805 + LTR54 LTR ERV1 6 99 -411 450 245 70 65 chr21 16699854 16699896 -18207674 + MER57A LTR ERV1 175 215 -188 1727 176 17 7 chr21 16699896 16700198 -18207372 - AluJb SINE Alu -7 305 1 450 245 70 65 chr21 16700198 16700355 -18207215 + MER57A LTR ERV1 215 375 -28 7060 209 34 9 chr21 16701422 16703101 -18204469 + L1 LINE L1 3301 5021 -1125 271 55 55 18 chr21 16703119 16703174 -18204396 + (TA)n Simple_repeat Simple_repeat 2 58 0 208 122 54 14 chr21 16703201 16703275 -18204295 + (TATAA)n Simple_repeat Simple_repeat 5 81 0 3246 119 34 29 chr21 16703329 16703488 -18204082 + L1PA16 LINE L1 5010 5167 -999 2287 107 0 0 chr21 16703488 16703788 -18203782 + AluSq SINE Alu 1 300 -13 3246 119 34 29 chr21 16703788 16704585 -18202985 + L1PA16 LINE L1 5167 6156 -10 21 0 0 0 chr21 16704796 16704817 -18202753 + AT_rich Low_complexity Low_complexity 1 21 0 231 268 35 70 chr21 16705616 16705758 -18201812 + LTR50 LTR ERVL 51 187 -608 252 254 71 32 chr21 16705926 16706052 -18201518 + LTR33A LTR ERVL 377 507 -16 479 257 20 0 chr21 16706754 16706855 -18200715 + MER5A DNA MER1_type 10 112 -77 24 0 0 0 chr21 16707511 16707535 -18200035 + AT_rich Low_complexity Low_complexity 1 24 0 28 61 0 0 chr21 16707904 16707953 -18199617 + AT_rich Low_complexity Low_complexity 1 49 0 205 200 0 22 chr21 16708120 16708165 -18199405 + GA-rich Low_complexity Low_complexity 2 45 0 1225 182 103 85 chr21 16708782 16709245 -18198325 + MER66A LTR ERV1 97 478 0 349 152 0 51 chr21 16709249 16709308 -18198262 + MER66B LTR ERV1 430 485 -1 649 278 0 54 chr21 16710125 16710348 -18197222 - L2 LINE L2 -2 3311 3101 1575 166 27 118 chr21 16711057 16711508 -18196062 + MLT2D LTR ERVL 1 410 -4 199 340 120 10 chr21 16711772 16711872 -18195698 + L2 LINE L2 3141 3251 -21 321 303 32 41 chr21 16713406 16713591 -18193979 - MIR SINE MIR -28 180 3 201 176 0 0 chr21 16713732 16713766 -18193804 + A-rich Low_complexity Low_complexity 1 34 0 1050 171 164 102 chr21 16713815 16714254 -18193316 + MLT1C LTR MaLR 2 467 0 216 170 0 0 chr21 16714295 16714342 -18193228 + MER5A DNA MER1_type 9 55 -134 2511 60 0 0 chr21 16716113 16716413 -18191157 + AluY SINE Alu 1 300 -11 1768 156 0 0 chr21 16717678 16717947 -18189623 + AluSx SINE Alu 3 271 -41 243 0 0 0 chr21 16717947 16717974 -18189596 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2059 130 13 10 chr21 16718408 16718715 -18188855 - AluSg SINE Alu -2 308 1 21 71 0 0 chr21 16719944 16719986 -18187584 + AT_rich Low_complexity Low_complexity 1 42 0 405 202 169 8 chr21 16720054 16720178 -18187392 - MER58B DNA MER1_type -2 339 196 261 180 213 0 chr21 16720926 16720987 -18186583 + L2 LINE L2 3240 3313 0 443 299 22 29 chr21 16721978 16722115 -18185455 - L1ME3A LINE L1 -12 6158 6023 271 294 57 12 chr21 16722157 16722302 -18185268 - L1ME3A LINE L1 -204 5960 5809 305 198 37 0 chr21 16722302 16722383 -18185187 - MLT1D LTR MaLR 0 505 422 294 185 0 0 chr21 16722417 16722471 -18185099 - MLT1D LTR MaLR -82 385 332 254 273 79 48 chr21 16722494 16722659 -18184911 + MIR SINE MIR 92 261 -1 2469 76 3 0 chr21 16722872 16723175 -18184395 + AluY SINE Alu 1 304 -7 1030 166 24 44 chr21 16723891 16724129 -18183441 + AluJo SINE Alu 85 318 0 1207 130 28 28 chr21 16726588 16726803 -18180767 - L1MA2 LINE L1 -4 6300 6086 963 201 31 24 chr21 16726819 16727073 -18180497 + MER65C LTR ERV1 200 455 -6 195 186 0 0 chr21 16727810 16727853 -18179717 + CT-rich Low_complexity Low_complexity 2 44 0 869 210 52 20 chr21 16727887 16728168 -18179402 + MER34 LTR ERV1 34 353 -189 2263 105 65 3 chr21 16728169 16728522 -18179048 - THE1C LTR MaLR 0 375 1 403 73 29 0 chr21 16728718 16728786 -18178784 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 422 211 56 84 chr21 16728786 16728965 -18178605 + MER65C-int LTR ERV1 1906 2009 -2862 231 214 31 51 chr21 16728977 16729075 -18178495 + (TATATG)n Simple_repeat Simple_repeat 3 98 0 209 217 29 36 chr21 16729086 16729224 -18178346 + (TATG)n Simple_repeat Simple_repeat 2 138 0 2084 46 0 0 chr21 16729268 16729530 -18178040 - L1PA4 LINE L1 -5 6150 5889 802 168 56 5 chr21 16729655 16729852 -18177718 + MER65C-int LTR ERV1 2288 2494 -2377 295 255 54 13 chr21 16730015 16730164 -18177406 + MER65C-int LTR ERV1 1591 1745 -6375 350 342 13 22 chr21 16730296 16730521 -18177049 + MER65C-int LTR ERV1 2351 2573 -2550 1441 228 91 47 chr21 16731224 16732490 -18175080 + MER65C-int LTR ERV1 2480 5573 -1025 2082 239 48 23 chr21 16732604 16733079 -18174491 + MER65C-int LTR ERV1 3647 4109 -2222 2010 9 0 5 chr21 16733079 16733303 -18174267 + AluYb8 SINE Alu 92 314 -4 2082 239 48 23 chr21 16733303 16733348 -18174222 + MER65C-int LTR ERV1 4109 5678 -653 504 319 67 46 chr21 16733422 16733767 -18173803 + MER65C-int LTR ERV1 4347 4698 -173 1719 203 24 43 chr21 16733918 16734386 -18173184 + MER65C LTR ERV1 1 459 -2 45 98 0 0 chr21 16734522 16734665 -18172905 + AT_rich Low_complexity Low_complexity 1 143 0 2063 218 14 40 chr21 16735009 16735528 -18172042 + MLT1D LTR MaLR 1 505 0 2219 142 65 31 chr21 16735680 16736094 -18171476 - MSTA LTR MaLR 0 428 1 8902 183 14 21 chr21 16736094 16736216 -18171354 - MSTA-int LTR MaLR 0 1651 1530 1844 144 49 0 chr21 16736216 16736501 -18171069 + AluSq SINE Alu 1 299 -14 8902 183 14 21 chr21 16736501 16738040 -18169530 - MSTA-int LTR MaLR -121 1530 2 2257 148 55 33 chr21 16738042 16738461 -18169109 - MSTA LTR MaLR 0 428 1 210 262 36 60 chr21 16739406 16739490 -18168080 - MIR SINE MIR -79 129 48 202 225 127 0 chr21 16740505 16740576 -18166994 + MIR SINE MIR 60 139 -69 395 262 19 28 chr21 16740975 16741082 -18166488 + MER5B DNA MER1_type 1 106 -72 930 189 22 66 chr21 16741397 16741625 -18165945 - MER20 DNA MER1_type 0 219 2 198 0 0 0 chr21 16743901 16743923 -18163647 + (A)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr21 16744487 16744509 -18163061 + AT_rich Low_complexity Low_complexity 1 22 0 657 319 136 15 chr21 16745814 16745952 -18161618 + L3 LINE CR1 1175 1295 -282 279 79 0 0 chr21 16745952 16745990 -18161580 + (CA)n Simple_repeat Simple_repeat 2 39 0 657 319 136 15 chr21 16745990 16746189 -18161381 + L3 LINE CR1 1295 1553 -24 189 0 0 0 chr21 16748131 16748152 -18159418 + (TA)n Simple_repeat Simple_repeat 1 21 0 4311 201 44 47 chr21 16748212 16749289 -18158281 + MER45R DNA AcHobo 1 1073 -508 718 206 87 5 chr21 16749276 16749494 -18158076 + MER45R DNA AcHobo 1219 1454 -127 282 255 0 78 chr21 16749601 16749721 -18157849 + MER5A DNA MER1_type 26 127 -51 396 223 0 21 chr21 16749742 16749836 -18157734 + MER45 DNA AcHobo 1488 1579 -2 3037 198 69 2 chr21 16750278 16750916 -18156654 + L1MB4 LINE L1 5500 6180 0 23 0 0 0 chr21 16750930 16750953 -18156617 + AT_rich Low_complexity Low_complexity 1 23 0 1253 129 0 5 chr21 16751309 16751495 -18156075 - AluJ SINE Alu 0 312 128 254 297 36 58 chr21 16751497 16751635 -18155935 + MIR SINE MIR 60 194 -68 371 203 0 0 chr21 16751730 16751799 -18155771 - AluJ SINE Alu -180 122 54 504 247 165 13 chr21 16751862 16752020 -18155550 - MER5A DNA MER1_type 0 189 8 2231 137 31 0 chr21 16752197 16752548 -18155022 + THE1B LTR MaLR 1 362 -2 232 316 95 11 chr21 16752820 16752915 -18154655 - MIR SINE MIR -120 142 40 351 237 0 102 chr21 16753186 16753304 -18154266 - MIR SINE MIR -86 122 17 25 90 0 0 chr21 16754438 16754505 -18153065 + AT_rich Low_complexity Low_complexity 1 67 0 1493 182 40 64 chr21 16755328 16755751 -18151819 + Charlie1 DNA MER1_type 2343 2755 -6 1382 298 99 26 chr21 16756395 16756899 -18150671 + MLT1H LTR MaLR 6 546 -3 260 150 17 67 chr21 16757923 16757983 -18149587 + MLT1J1 LTR MaLR 1 57 -389 1002 250 5 18 chr21 16758247 16758467 -18149103 - MER58A DNA MER1_type -6 218 2 284 217 28 66 chr21 16758858 16758964 -18148606 + MER67B LTR ERV1 20 121 -540 730 286 102 38 chr21 16759439 16759902 -18147668 - MLT1H LTR MaLR 0 549 18 4228 153 75 6 chr21 16761132 16761480 -18146090 - L1MC1 LINE L1 0 6613 6290 1881 93 45 14 chr21 16761480 16761771 -18145799 - L1MA1 LINE L1 -7 6295 5996 4228 153 75 6 chr21 16761771 16762237 -18145333 - L1MC1 LINE L1 -323 6290 5743 974 81 0 0 chr21 16762293 16762417 -18145153 - AluSg/x SINE Alu -12 298 175 6469 238 31 17 chr21 16762419 16764282 -18143288 - L1MC1 LINE L1 -755 5671 3782 1121 181 58 0 chr21 16764282 16764487 -18143083 - MSTB LTR MaLR 0 426 210 266 197 0 26 chr21 16764508 16764584 -18142986 + (TA)n Simple_repeat Simple_repeat 2 75 0 22 0 0 0 chr21 16764609 16764631 -18142939 + AT_rich Low_complexity Low_complexity 1 22 0 3477 217 23 24 chr21 16764634 16765666 -18141904 - L1MC1 LINE L1 -2730 3696 2666 302 133 0 0 chr21 16765763 16765808 -18141762 - MLT1B LTR MaLR 0 390 346 528 215 50 33 chr21 16765808 16765929 -18141641 - L1MC1 LINE L1 -5831 595 473 1211 224 47 23 chr21 16766074 16766147 -18141423 - MLT1E LTR MaLR -3 590 520 5254 76 21 34 chr21 16766147 16766923 -18140647 - MER4E LTR ERV1 0 766 1 1211 224 47 23 chr21 16766923 16767148 -18140422 - MLT1E LTR MaLR -73 520 285 2611 53 0 0 chr21 16769461 16769765 -18137805 - AluY SINE Alu -7 304 1 470 56 0 28 chr21 16769865 16769936 -18137634 - L1PA16 LINE L1 -1 6165 6097 707 193 2 0 chr21 16769913 16770058 -18137512 - L1PA16 LINE L1 -79 6086 5940 984 191 34 5 chr21 16770226 16770435 -18137135 - L1PA16 LINE L1 0 6166 5952 2613 173 15 2 chr21 16770739 16771196 -18136374 + MLT1C LTR MaLR 2 464 -3 407 270 27 0 chr21 16771280 16771391 -18136179 + LTR67 LTR ERVL 425 538 -19 545 329 12 0 chr21 16771555 16771725 -18135845 + L1ME LINE L1 5482 5653 -468 231 136 0 62 chr21 16771750 16771831 -18135739 + (TA)n Simple_repeat Simple_repeat 2 77 0 346 307 100 7 chr21 16772171 16772311 -18135259 + MIR SINE MIR 2 154 -108 1725 174 27 9 chr21 16772434 16772767 -18134803 - L1MC1 LINE L1 0 6333 5995 321 118 0 0 chr21 16773200 16773251 -18134319 + L1MA5A LINE L1 6169 6219 -78 2083 90 4 0 chr21 16773251 16773517 -18134053 - AluSc SINE Alu -40 269 3 24 67 0 0 chr21 16773519 16773564 -18134006 + AT_rich Low_complexity Low_complexity 1 45 0 2364 85 13 0 chr21 16773663 16773970 -18133600 - AluSp SINE Alu -2 311 1 425 211 39 10 chr21 16773983 16774087 -18133483 + MER21B LTR ERV1 1 107 -756 3463 223 39 20 chr21 16774157 16774937 -18132633 + MER21B LTR ERV1 43 836 -27 227 191 0 0 chr21 16775166 16775213 -18132357 - L1ME LINE L1 -688 5482 5436 331 97 65 0 chr21 16775729 16775791 -18131779 - L1MA7 LINE L1 -5 6286 6221 186 133 0 0 chr21 16775794 16775824 -18131746 + (TA)n Simple_repeat Simple_repeat 1 30 0 2502 72 3 0 chr21 16775824 16776130 -18131440 - AluY SINE Alu -2 309 3 1089 149 40 15 chr21 16776132 16776371 -18131199 - L1MA7 LINE L1 -60 6231 5980 496 275 103 72 chr21 16778137 16778457 -18129113 + MLT2F LTR ERVL 334 663 0 748 237 55 36 chr21 16778664 16778883 -18128687 - MER58A DNA MER1_type 0 224 2 192 339 51 0 chr21 16778954 16779013 -18128557 + MIR3 SINE MIR 14 75 -133 837 297 64 35 chr21 16779071 16779582 -18127988 + MLT1G3 LTR MaLR 12 555 0 300 326 97 27 chr21 16780563 16780757 -18126813 + MIR SINE MIR 16 223 -39 294 379 35 24 chr21 16780826 16780995 -18126575 + L2 LINE L2 2993 3163 -109 397 333 28 14 chr21 16781542 16781686 -18125884 - MIR SINE MIR -1 261 116 1852 158 21 63 chr21 16782407 16782570 -18125000 - MLT1A1 LTR MaLR 0 365 197 1535 157 93 39 chr21 16782570 16782926 -18124644 + THE1C LTR MaLR 1 375 0 1852 158 21 63 chr21 16782926 16783143 -18124427 - MLT1A1 LTR MaLR -168 197 1 25 0 0 0 chr21 16783875 16783900 -18123670 + AT_rich Low_complexity Low_complexity 1 25 0 2032 257 91 30 chr21 16783905 16784916 -18122654 + L1M4 LINE L1 3177 4249 -1897 209 146 0 49 chr21 16785128 16785169 -18122401 - L2 LINE L2 -88 3225 3187 1834 219 55 34 chr21 16785455 16785980 -18121590 - MER65-int LTR ERV1 -3933 938 403 21007 162 34 31 chr21 16785986 16789042 -18118528 + L1PA10 LINE L1 203 3249 -3234 2467 68 0 10 chr21 16789042 16789349 -18118221 + AluY SINE Alu 1 304 -7 21007 162 34 31 chr21 16789349 16792479 -18115091 + L1PA10 LINE L1 3249 6478 -5 7889 220 16 22 chr21 16792491 16794515 -18113055 + L1PA16 LINE L1 2176 4188 -1958 7209 66 15 19 chr21 16794515 16795154 -18112416 + SVA Other Other 1 1386 -759 7209 74 24 18 chr21 16795154 16796150 -18111420 + SVA Other Other 385 1386 0 201 139 0 0 chr21 16796177 16796220 -18111350 + (A)n Simple_repeat Simple_repeat 1 43 0 5035 151 26 6 chr21 16796336 16797935 -18109635 + L1PA16 LINE L1 4178 5838 -328 1939 61 8 4 chr21 16797935 16798181 -18109389 + AluY SINE Alu 60 306 -5 5035 151 26 6 chr21 16798181 16798517 -18109053 + L1PA16 LINE L1 5838 6166 0 1624 227 72 57 chr21 16798675 16799720 -18107850 + MER65A-int LTR ERV1 3077 3824 -1112 251 95 0 203 chr21 16799808 16799882 -18107688 + MER65A-int LTR ERV1 5339 5397 -934 1922 230 62 11 chr21 16799888 16800322 -18107248 + MER65A-int LTR ERV1 3605 4060 -811 905 197 10 19 chr21 16800319 16800527 -18107043 + MER65A-int LTR ERV1 4397 4602 -269 1995 135 69 64 chr21 16800778 16800813 -18106757 + MER65A LTR ERV1 5 38 -407 390 42 0 0 chr21 16800813 16800861 -18106709 + (CA)n Simple_repeat Simple_repeat 2 49 0 1995 135 69 64 chr21 16800861 16801052 -18106518 + MER65A LTR ERV1 38 227 -218 1989 78 0 23 chr21 16801052 16801309 -18106261 - AluSg SINE Alu -25 285 35 1995 135 69 64 chr21 16801309 16801518 -18106052 + MER65A LTR ERV1 227 443 -2 259 241 24 24 chr21 16802305 16802471 -18105099 + (TTA)n Simple_repeat Simple_repeat 2 167 0 27 0 0 0 chr21 16804046 16804073 -18103497 + AT_rich Low_complexity Low_complexity 1 27 0 233 236 18 18 chr21 16804116 16804171 -18103399 - L2 LINE L2 -14 3258 3204 342 0 0 0 chr21 16804174 16804212 -18103358 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 0 0 0 chr21 16804367 16804389 -18103181 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 16806108 16806136 -18101434 + AT_rich Low_complexity Low_complexity 1 28 0 207 308 0 15 chr21 16806358 16806423 -18101147 - MIR SINE MIR -3 259 196 572 176 90 85 chr21 16806495 16806683 -18100887 - MLT2B1 LTR ERVL -34 486 298 768 173 8 0 chr21 16806802 16806935 -18100635 - MLT2B1 LTR ERVL -386 134 1 3024 221 69 17 chr21 16806957 16807940 -18099630 - L1ME2 LINE L1 -1 6163 5127 2150 129 0 3 chr21 16808052 16808355 -18099215 - AluSx SINE Alu -10 302 1 719 139 104 12 chr21 16808963 16809136 -18098434 - MER53 DNA DNA 0 189 1 314 370 65 4 chr21 16809138 16809368 -18098202 + L2 LINE L2 2488 2731 -583 2609 185 24 10 chr21 16809690 16810188 -18097382 - LTR53 LTR ERVL -1 518 14 537 213 71 0 chr21 16810694 16810835 -18096735 + LTR37A LTR ERV1 276 426 0 36 40 0 0 chr21 16810913 16810963 -18096607 + AT_rich Low_complexity Low_complexity 1 50 0 527 212 0 10 chr21 16812447 16812546 -18095024 - MER70A LTR ERVL 0 472 375 873 254 17 14 chr21 16812585 16812979 -18094591 - MER70B LTR ERVL -207 371 90 812 211 12 37 chr21 16812978 16813139 -18094431 - MER70B LTR ERVL -419 159 3 1776 260 101 8 chr21 16814068 16814684 -18092886 + MER104A DNA MER2_type 70 745 -2 710 190 133 9 chr21 16815156 16815367 -18092203 + MER110A LTR ERV1 14 250 -218 692 262 70 53 chr21 16816254 16816424 -18091146 + L1MEd LINE L1 537 703 -5416 1952 108 0 0 chr21 16816424 16816674 -18090896 + AluSx SINE Alu 31 280 -32 342 0 0 0 chr21 16816674 16816712 -18090858 + (TAAA)n Simple_repeat Simple_repeat 1 38 0 692 262 70 53 chr21 16816712 16817223 -18090347 + L1MEd LINE L1 702 1257 -4862 528 238 60 22 chr21 16817849 16818034 -18089536 + MER95 LTR ERV 240 431 0 1429 202 75 16 chr21 16818034 16818340 -18089230 - MLT1A1 LTR MaLR -41 324 1 21 0 0 0 chr21 16819034 16819055 -18088515 + AT_rich Low_complexity Low_complexity 1 21 0 2291 71 0 42 chr21 16820035 16820343 -18087227 + AluY SINE Alu 3 297 -14 3422 205 45 8 chr21 16820343 16821111 -18086459 + L1MC3 LINE L1 5821 6620 -1165 11317 130 12 16 chr21 16821111 16822897 -18084673 + Tigger4(Zombi) DNA MER2_type 2 1780 -951 5066 124 3 0 chr21 16822897 16823653 -18083917 - L1PA13 LINE L1 -9 6154 5397 4408 123 64 9 chr21 16823653 16824390 -18083180 + Tigger4(Zombi) DNA MER2_type 1771 2547 -184 1158 138 0 6 chr21 16824390 16824549 -18083021 + AluSg/x SINE Alu 131 288 -22 1154 129 27 0 chr21 16824554 16824740 -18082830 + Tigger4(Zombi) DNA MER2_type 2541 2731 0 5594 180 48 5 chr21 16824740 16825860 -18081710 + L1MC3 LINE L1 6618 7785 0 218 178 22 0 chr21 16825861 16825906 -18081664 - MIR SINE MIR -215 47 2 4832 98 21 11 chr21 16826379 16827105 -18080465 - L1MA2 LINE L1 0 6304 5572 2029 78 0 0 chr21 16827118 16827390 -18080180 - AluY SINE Alu 0 310 39 2004 78 96 7 chr21 16827392 16827662 -18079908 - AluY SINE Alu -17 294 1 1934 250 19 52 chr21 16829439 16830059 -18077511 + MER77 LTR ERV1 1 600 -5 2075 134 36 38 chr21 16830564 16830929 -18076641 - THE1B LTR MaLR 0 364 1 9411 107 6 0 chr21 16830929 16832268 -18075302 - THE1B-int LTR MaLR 0 1580 234 870 281 146 34 chr21 16832294 16832949 -18074621 + L2 LINE L2 2403 3175 -138 384 22 0 0 chr21 16832949 16832994 -18074576 + (TC)n Simple_repeat Simple_repeat 2 46 0 870 281 146 34 chr21 16832994 16833136 -18074434 + L2 LINE L2 3175 3300 -13 228 67 0 0 chr21 16833136 16833166 -18074404 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 180 310 0 17 chr21 16833620 16833678 -18073892 - L2 LINE L2 0 3272 3216 33 0 0 0 chr21 16833726 16833759 -18073811 + AT_rich Low_complexity Low_complexity 1 33 0 456 254 91 17 chr21 16834412 16834644 -18072926 + LTR16A1 LTR ERVL 209 457 0 405 0 0 0 chr21 16834894 16834939 -18072631 + (TG)n Simple_repeat Simple_repeat 2 46 0 191 328 35 0 chr21 16835460 16835518 -18072052 - MIR SINE MIR -118 90 31 1507 66 0 5 chr21 16835573 16835769 -18071801 + L1PA6 LINE L1 5959 6153 -1 237 340 22 17 chr21 16835964 16836070 -18071500 - MIR SINE MIR -60 148 41 235 324 10 10 chr21 16836999 16837101 -18070469 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 189 74 0 0 chr21 16837352 16837379 -18070191 + (CA)n Simple_repeat Simple_repeat 2 28 0 207 0 0 0 chr21 16837578 16837601 -18069969 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 180 111 0 0 chr21 16837990 16838017 -18069553 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 336 346 58 0 chr21 16838034 16838138 -18069432 - L2 LINE L2 -27 3245 3136 2023 130 3 3 chr21 16838473 16838765 -18068805 + AluSx SINE Alu 1 292 -20 205 86 29 0 chr21 16838769 16838804 -18068766 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 380 296 61 30 chr21 16838962 16839094 -18068476 + L2 LINE L2 3136 3271 -1 1146 142 5 0 chr21 16839766 16839963 -18067607 + L1PBa LINE L1 3 200 -6663 2497 113 10 17 chr21 16839965 16840381 -18067189 + L1PBa LINE L1 636 1048 -5815 8824 185 15 5 chr21 16840382 16842741 -18064829 + L1PBa LINE L1 1093 3699 -3163 665 243 11 0 chr21 16842743 16842932 -18064638 + L1 LINE L1 4020 4210 -2652 2061 123 0 14 chr21 16842984 16843277 -18064293 + AluSx SINE Alu 15 303 -9 4558 209 4 16 chr21 16843286 16844381 -18063189 + L1 LINE L1 4227 5308 -1554 231 152 17 85 chr21 16844377 16844419 -18063151 + L1P5 LINE L1 5737 5775 -376 471 73 0 0 chr21 16844419 16844487 -18063083 + (TAGA)n Simple_repeat Simple_repeat 3 70 0 231 152 17 85 chr21 16844487 16844503 -18063067 + L1P5 LINE L1 5775 5791 -360 258 32 0 0 chr21 16844961 16844992 -18062578 + (T)n Simple_repeat Simple_repeat 1 31 0 211 323 46 0 chr21 16846246 16846311 -18061259 + L2 LINE L2 3023 3090 -223 280 268 8 8 chr21 16846638 16846765 -18060805 + CT-rich Low_complexity Low_complexity 2 128 0 377 316 81 0 chr21 16847304 16847478 -18060092 + Charlie7 DNA MER1_type 107 294 -2318 254 325 79 0 chr21 16848049 16848163 -18059407 - L3 LINE CR1 -358 1219 1097 429 335 59 53 chr21 16848231 16848744 -18058826 - L2 LINE L2 -2 3270 2764 1924 168 3 3 chr21 16849136 16849433 -18058137 - AluJb SINE Alu -15 297 1 1325 201 10 9 chr21 16850232 16850602 -18056968 + MLT1B LTR MaLR 2 424 -43 1269 121 0 10 chr21 16851271 16851469 -18056101 - L1P LINE L1 -1881 4265 4070 6164 95 23 11 chr21 16851461 16852007 -18055563 - L1P LINE L1 -2342 3804 3239 2330 104 3 3 chr21 16852007 16852316 -18055254 - AluSc SINE Alu 0 309 1 6164 95 23 11 chr21 16852316 16852755 -18054815 - L1P LINE L1 -2907 3239 2807 388 115 0 0 chr21 16852752 16852813 -18054757 - L1P LINE L1 -3664 2482 2422 1190 169 108 68 chr21 16852821 16853247 -18054323 - LTR7 LTR ERV1 -7 443 1 1223 102 0 0 chr21 16853247 16853433 -18054137 - L1P LINE L1 -3721 2425 2240 7794 85 16 1 chr21 16853433 16855335 -18052235 + L1PA7 LINE L1 4249 6153 -1 1798 117 33 37 chr21 16856794 16857094 -18050476 + AluSx SINE Alu 11 309 -3 349 231 11 0 chr21 16857135 16857226 -18050344 + L1MEc LINE L1 1724 1815 -4581 572 252 70 30 chr21 16857222 16857523 -18050047 + L1MEc LINE L1 1604 1916 -4480 2078 192 52 69 chr21 16857764 16857909 -18049661 + L1ME2 LINE L1 5181 5327 -837 618 231 8 0 chr21 16857909 16858039 -18049531 + FLAM_C SINE Alu 2 132 -1 2078 192 52 69 chr21 16858039 16858716 -18048854 + L1ME2 LINE L1 5327 6155 -9 1953 108 97 9 chr21 16858996 16859511 -18048059 + MER51A LTR ERV1 1 634 0 253 206 16 16 chr21 16859516 16859579 -18047991 + (TA)n Simple_repeat Simple_repeat 2 64 0 2349 94 0 7 chr21 16859801 16860099 -18047471 - AluSq SINE Alu -17 296 1 6389 32 0 0 chr21 16861533 16862285 -18045285 + L1PA4 LINE L1 5401 6152 -3 21 0 0 0 chr21 16863175 16863196 -18044374 + AT_rich Low_complexity Low_complexity 1 21 0 292 270 0 0 chr21 16863571 16863634 -18043936 - MER5A DNA MER1_type 0 189 127 707 277 41 45 chr21 16865950 16866192 -18041378 + MIR SINE MIR 1 241 -21 1951 111 0 7 chr21 16866447 16866726 -18040844 - AluSg SINE Alu -12 298 22 447 213 8 71 chr21 16866937 16867064 -18040506 - MIR SINE MIR -27 235 117 926 214 35 0 chr21 16867125 16867326 -18040244 + MER3 DNA MER1_type 1 208 -1 322 348 67 63 chr21 16869422 16869721 -18037849 - L2 LINE L2 -41 3231 2932 742 278 64 51 chr21 16869897 16870365 -18037205 - MLT1H LTR MaLR -1 548 75 447 202 0 11 chr21 16871053 16871142 -18036428 + MER105 DNA DNA 116 203 -1 528 239 139 78 chr21 16873920 16874367 -18033203 - LTR1 LTR ERV1 -284 501 28 246 111 180 3 chr21 16874419 16874492 -18033078 + Charlie8 DNA MER1_type 196 276 -2141 1799 192 31 6 chr21 16874538 16874744 -18032826 + MLT1A1 LTR MaLR 3 223 -142 1458 190 19 8 chr21 16874744 16875012 -18032558 + AluJo SINE Alu 1 271 -41 1799 192 31 6 chr21 16875012 16875116 -18032454 + MLT1A1 LTR MaLR 223 365 0 287 116 0 0 chr21 16875116 16875159 -18032411 + MLT1A2 LTR MaLR 332 374 0 265 255 138 0 chr21 16875195 16875289 -18032281 - MLT1J2 LTR MaLR -125 325 219 1926 153 32 27 chr21 16875404 16875777 -18031793 - THE1C LTR MaLR 0 375 1 339 309 16 73 chr21 16876855 16876938 -18030632 + MER5A DNA MER1_type 7 93 -96 1927 188 37 0 chr21 16876938 16877290 -18030280 + MLT1A1 LTR MaLR 1 365 0 339 309 16 73 chr21 16877290 16877397 -18030173 + MER5A DNA MER1_type 93 186 -3 1083 293 82 25 chr21 16877847 16878410 -18029160 - MLT1G1 LTR MaLR 0 595 1 2177 87 0 78 chr21 16878549 16878881 -18028689 + AluSc SINE Alu 1 306 -3 426 384 11 0 chr21 16879916 16880093 -18027477 - MIR3 SINE MIR 0 208 30 2733 34 0 3 chr21 16880130 16880458 -18027112 - L1PA4 LINE L1 -1 6154 5828 849 292 70 27 chr21 16880759 16881132 -18026438 - L2 LINE L2 -1 3312 2924 34 24 0 0 chr21 16881193 16881234 -18026336 + AT_rich Low_complexity Low_complexity 1 41 0 225 300 75 94 chr21 16881388 16881460 -18026110 - L2 LINE L2 -635 2679 2607 2301 93 0 0 chr21 16881460 16881751 -18025819 + AluSg SINE Alu 1 291 -19 225 300 75 94 chr21 16881751 16882425 -18025145 - L2 LINE L2 -707 2607 1947 432 164 0 29 chr21 16883732 16883836 -18023734 + CT-rich Low_complexity Low_complexity 4 104 0 255 317 135 10 chr21 16883877 16883981 -18023589 + MLT1L LTR MaLR 368 484 -131 1087 201 57 93 chr21 16884154 16884603 -18022967 + MER66A LTR ERV1 99 478 0 510 276 59 18 chr21 16886874 16887044 -18020526 + MIR SINE MIR 12 188 -74 298 357 0 14 chr21 16887697 16887840 -18019730 - MLT2E LTR ERVL -454 174 34 345 248 12 56 chr21 16887906 16888067 -18019503 - ERVL-E LTR ERVL -14 5750 5597 204 255 104 19 chr21 16888139 16888245 -18019325 + L2 LINE L2 1898 2012 -1302 564 344 76 0 chr21 16890023 16890273 -18017297 - L3 LINE CR1 -588 989 721 393 279 10 0 chr21 16891085 16891189 -18016381 - L1M4 LINE L1 -1415 4731 4627 254 215 31 0 chr21 16891215 16891280 -18016290 - L1M4 LINE L1 -1524 4622 4556 618 277 71 16 chr21 16891286 16891539 -18016031 - L1M4 LINE L1 -1622 4524 4258 333 288 47 38 chr21 16891605 16891841 -18015729 - L1M4 LINE L1 -1967 4179 3942 568 286 58 22 chr21 16891859 16892362 -18015208 - L1M4 LINE L1 -2247 3899 3368 21 57 0 0 chr21 16892742 16892777 -18014793 + AT_rich Low_complexity Low_complexity 1 35 0 192 125 0 0 chr21 16892893 16892925 -18014645 + (TA)n Simple_repeat Simple_repeat 2 33 0 993 190 14 28 chr21 16893041 16893252 -18014318 + MER3 DNA MER1_type 1 208 -1 575 211 151 5 chr21 16893302 16893520 -18014050 - LTR50 LTR ERVL -43 752 503 2730 98 3 11 chr21 16893855 16894233 -18013337 + THE1C LTR MaLR 1 375 0 969 238 71 18 chr21 16894562 16894844 -18012726 - MER102b DNA MER1_type -44 297 1 22 0 0 0 chr21 16895942 16895964 -18011606 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr21 16896217 16896242 -18011328 + AT_rich Low_complexity Low_complexity 1 25 0 1483 171 53 47 chr21 16896340 16896639 -18010931 + AluJb SINE Alu 1 301 -11 333 109 0 0 chr21 16896675 16896730 -18010840 + (T)n Simple_repeat Simple_repeat 1 55 0 235 26 0 0 chr21 16896734 16896773 -18010797 - L1HS LINE L1 0 6155 6117 1098 36 0 0 chr21 16896765 16896905 -18010665 + L1HS LINE L1 5965 6104 -51 2635 10 0 0 chr21 16896902 16897209 -18010361 + L1P1 LINE L1 5464 5770 -385 554 77 10 77 chr21 16898902 16899006 -18008564 + L1MA2 LINE L1 6208 6304 0 562 267 81 0 chr21 16899124 16899296 -18008274 + MIR SINE MIR 77 262 0 415 240 74 0 chr21 16899886 16900019 -18007551 - MLT1I LTR MaLR -266 143 13 451 278 32 30 chr21 16900109 16900285 -18007285 - MER5B DNA MER1_type -3 186 1 1943 153 24 0 chr21 16900422 16900716 -18006854 + AluSx SINE Alu 1 301 -11 435 256 119 12 chr21 16900741 16900901 -18006669 + MLT1H LTR MaLR 23 199 -350 1983 158 32 29 chr21 16901975 16902349 -18005221 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr21 16904134 16904156 -18003414 + AT_rich Low_complexity Low_complexity 1 22 0 677 219 15 14 chr21 16904305 16904583 -18002987 + GA-rich Low_complexity Low_complexity 1 278 0 4016 84 16 2 chr21 16905252 16905798 -18001772 + MER41A LTR ERV1 1 554 0 1785 197 37 6 chr21 16906020 16906370 -18001200 - MLT1A1 LTR MaLR -4 361 1 1966 135 41 3 chr21 16907461 16907802 -17999768 - MLT1B LTR MaLR 0 390 37 512 105 61 70 chr21 16907808 16907883 -17999687 - Ricksha DNA DNA -7 3247 3172 2146 142 18 6 chr21 16907883 16908221 -17999349 + MER61A LTR ERV1 2 343 0 512 105 61 70 chr21 16908221 16908259 -17999311 - Ricksha DNA DNA -82 3172 3135 41493 45 2 2 chr21 16908262 16914407 -17993163 + L1PA4 LINE L1 7 6149 -6 7495 145 52 15 chr21 16914415 16915853 -17991717 - Ricksha DNA DNA -65 3181 1690 595 203 0 0 chr21 16915908 16916026 -17991544 - Ricksha DNA DNA -1927 119 2 1027 155 53 15 chr21 16916241 16916447 -17991123 - MER67A LTR ERV1 0 543 330 429 127 56 0 chr21 16916485 16916556 -17991014 + Ricksha DNA DNA 2315 2389 -862 410 100 0 12 chr21 16916583 16916663 -17990907 + Ricksha DNA DNA 2449 2527 -724 2535 162 45 32 chr21 16916967 16917497 -17990073 - MER67A LTR ERV1 0 543 7 2195 117 7 0 chr21 16917540 16917877 -17989693 - AluSq SINE Alu 0 313 1 461 195 124 0 chr21 16919845 16919958 -17987612 + L2 LINE L2 3187 3313 0 1922 221 53 37 chr21 16920934 16921257 -17986313 + MLT1E2 LTR MaLR 3 334 -292 2261 138 28 6 chr21 16921257 16921613 -17985957 - THE1B LTR MaLR 0 364 1 1922 221 53 37 chr21 16921613 16921911 -17985659 + MLT1E2 LTR MaLR 334 626 0 1976 218 50 76 chr21 16922152 16922993 -17984577 - L1MC5 LINE L1 -450 7511 6693 198 222 0 22 chr21 16923506 16923551 -17984019 + MIR3 SINE MIR 160 203 -5 23 54 0 0 chr21 16923919 16923956 -17983614 + AT_rich Low_complexity Low_complexity 1 37 0 2513 165 28 8 chr21 16924014 16924516 -17983054 + L1MB7 LINE L1 5657 6168 -16 199 362 92 31 chr21 16925787 16926016 -17981554 + L2 LINE L2 2733 2975 -339 2434 59 0 23 chr21 16926054 16926358 -17981212 + AluY SINE Alu 1 297 -14 684 139 9 9 chr21 16926582 16926697 -17980873 + MSTB1 LTR MaLR 1 115 -317 2271 109 71 0 chr21 16926708 16927048 -17980522 - THE1B LTR MaLR 0 364 1 1508 56 0 37 chr21 16927048 16927263 -17980307 - THE1B-int LTR MaLR 0 1580 1374 1830 146 36 47 chr21 16927263 16927626 -17979944 - THE1B LTR MaLR 0 364 6 5897 126 15 9 chr21 16927626 16928917 -17978653 - THE1B-int LTR MaLR -197 1383 54 1285 155 61 65 chr21 16928923 16929201 -17978369 + MSTB1 LTR MaLR 143 419 -13 1487 214 33 6 chr21 16929203 16929534 -17978036 - MLT1A1 LTR MaLR -25 340 1 496 288 96 35 chr21 16929554 16929752 -17977818 + MIR SINE MIR 22 231 -31 23 33 0 0 chr21 16929864 16929894 -17977676 + AT_rich Low_complexity Low_complexity 1 30 0 825 232 6 0 chr21 16930547 16930728 -17976842 - MLT1A1 LTR MaLR 0 365 184 5847 165 13 7 chr21 16931720 16932891 -17974679 + L1PA15 LINE L1 3223 4385 -1780 432 37 0 0 chr21 16932891 16932945 -17974625 + (CA)n Simple_repeat Simple_repeat 1 54 0 5847 165 13 7 chr21 16932945 16934676 -17972894 + L1PA15 LINE L1 4385 6162 -3 189 0 0 0 chr21 16935902 16935923 -17971647 + (A)n Simple_repeat Simple_repeat 1 21 0 1861 202 55 55 chr21 16936948 16937453 -17970117 - MLT1D LTR MaLR 0 505 1 861 205 94 30 chr21 16938359 16938601 -17968969 - Charlie1 DNA MER1_type -1 2760 2494 1995 152 0 0 chr21 16938601 16938897 -17968673 - AluSx SINE Alu -13 299 4 861 205 94 30 chr21 16938897 16938951 -17968619 - Charlie1 DNA MER1_type -267 2494 2445 375 95 16 0 chr21 16939166 16939229 -17968341 + L1MA9 LINE L1 6227 6290 -22 184 340 87 0 chr21 16940079 16940182 -17967388 + L3 LINE CR1 1054 1165 -412 1531 191 57 14 chr21 16940240 16940590 -17966980 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr21 16942468 16942490 -17965080 + AT_rich Low_complexity Low_complexity 1 22 0 382 333 14 0 chr21 16942670 16942811 -17964759 + LTR16C LTR ERVL 74 216 -275 1411 196 16 16 chr21 16943121 16943443 -17964127 - MLT1A1 LTR MaLR -43 322 1 517 253 23 7 chr21 16943454 16943667 -17963903 + LTR16C LTR ERVL 231 485 -6 198 395 73 0 chr21 16943832 16943956 -17963614 - L2 LINE L2 -213 3059 2927 445 282 121 39 chr21 16944475 16945018 -17962552 + L2 LINE L2 2454 3077 -195 196 347 132 0 chr21 16945266 16945387 -17962183 - MIR SINE MIR -125 137 1 10837 198 23 12 chr21 16945996 16948825 -17958745 - L1PA16 LINE L1 -9 6157 3277 2311 107 0 0 chr21 16948825 16949124 -17958446 - AluSx SINE Alu -13 299 1 10837 198 23 12 chr21 16949124 16949946 -17957624 - L1PA16 LINE L1 -2889 3277 2466 2289 132 25 6 chr21 16950609 16950966 -17956604 + THE1B LTR MaLR 1 364 0 1382 225 11 4 chr21 16951173 16951720 -17955850 - MER82 DNA MER2_type -58 595 1 2304 97 0 0 chr21 16951795 16952084 -17955486 + AluSq SINE Alu 1 289 -24 343 208 28 0 chr21 16952351 16952423 -17955147 + MER33 DNA MER1_type 6 79 -245 1975 136 3 0 chr21 16952472 16952758 -17954812 - AluJb SINE Alu -24 288 2 535 185 116 138 chr21 16953018 16953245 -17954325 - MIR SINE MIR -25 237 15 366 23 0 0 chr21 16953245 16953288 -17954282 + (CA)n Simple_repeat Simple_repeat 1 43 0 2290 67 0 7 chr21 16953944 16954256 -17953314 + AluSp SINE Alu 1 310 0 23 0 0 0 chr21 16954348 16954371 -17953199 + AT_rich Low_complexity Low_complexity 1 23 0 1609 170 3 28 chr21 16954371 16954660 -17952910 - AluJo SINE Alu -30 282 1 420 286 73 26 chr21 16954938 16955130 -17952440 + MIR SINE MIR 50 250 -12 208 227 0 0 chr21 16955140 16955184 -17952386 + MIR3 SINE MIR 154 197 -11 204 40 0 0 chr21 16955889 16955914 -17951656 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1764 154 4 11 chr21 16956114 16956394 -17951176 - AluSx SINE Alu 0 312 35 612 251 25 25 chr21 16956623 16956826 -17950744 - LTR16C LTR ERVL -2 489 287 1848 230 62 57 chr21 16957093 16957968 -17949602 - Charlie2 DNA MER1_type -3 2859 1981 1538 102 5 0 chr21 16957970 16958175 -17949395 + AluSq SINE Alu 1 206 -107 337 123 0 0 chr21 16958175 16958232 -17949338 + AluSq SINE Alu 243 299 -3 255 317 19 50 chr21 16958428 16958589 -17948981 - Charlie2 DNA MER1_type -2578 204 49 800 114 8 0 chr21 16959387 16959510 -17948060 + MLT1D LTR MaLR 382 505 0 1582 118 9 0 chr21 16960877 16961105 -17946465 + MER30 DNA MER1_type 1 230 0 1854 217 60 38 chr21 16961374 16961441 -17946129 - MLT1E LTR MaLR 0 593 529 1675 137 43 22 chr21 16961441 16961718 -17945852 + AluJb SINE Alu 2 284 -28 372 22 0 0 chr21 16961718 16961763 -17945807 + (CA)n Simple_repeat Simple_repeat 2 46 0 1854 217 60 38 chr21 16961763 16962228 -17945342 - MLT1E LTR MaLR -63 530 48 375 259 112 0 chr21 16962550 16962666 -17944904 - MIR SINE MIR -76 186 58 1610 60 0 0 chr21 16962914 16963114 -17944456 + L1PA3 LINE L1 5956 6155 0 270 212 30 30 chr21 16963669 16963735 -17943835 - L2 LINE L2 -27 3245 3180 2386 67 0 0 chr21 16964342 16964649 -17942921 + AluY SINE Alu 1 307 0 847 155 53 11 chr21 16965072 16965259 -17942311 - L1PA5 LINE L1 0 6154 5960 28 0 0 0 chr21 16965752 16965780 -17941790 + AT_rich Low_complexity Low_complexity 1 28 0 289 173 25 37 chr21 16966182 16966263 -17941307 - MLT1H LTR MaLR -2 528 449 464 287 77 0 chr21 16966348 16966491 -17941079 - MLT1H LTR MaLR -199 350 197 1617 238 11 8 chr21 16966491 16966869 -17940701 - MLT1E2 LTR MaLR 0 626 248 727 248 64 0 chr21 16967050 16967252 -17940318 - MLT1E2 LTR MaLR -382 272 58 1977 109 7 31 chr21 16967818 16968112 -17939458 + AluSx SINE Alu 1 287 -25 312 70 0 0 chr21 16968441 16968484 -17939086 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 1783 178 0 0 chr21 16968484 16968765 -17938805 - AluSx SINE Alu -27 285 5 466 206 83 69 chr21 16970960 16971164 -17936406 + MER3 DNA MER1_type 3 209 0 808 193 24 0 chr21 16971006 16971172 -17936398 - MER3 DNA MER1_type 0 209 40 4433 57 0 25 chr21 16972727 16973327 -17934243 - L1PA13 LINE L1 0 6163 5579 1122 181 27 18 chr21 16973370 16973591 -17933979 + MER58A DNA MER1_type 2 224 0 378 149 230 11 chr21 16974548 16974635 -17932935 + U6 snRNA snRNA 1 106 -1 698 152 8 0 chr21 16974674 16974792 -17932778 - MLT1B LTR MaLR -8 382 264 218 175 0 35 chr21 16974909 16974966 -17932604 + GA-rich Low_complexity Low_complexity 2 56 0 2081 165 16 16 chr21 16975208 16975596 -17931974 + L1PA13 LINE L1 5769 6156 -7 26 64 0 0 chr21 16975596 16975643 -17931927 + AT_rich Low_complexity Low_complexity 1 47 0 429 273 47 7 chr21 16976770 16976920 -17930650 + MER115 DNA AcHobo 4 159 -534 460 345 112 24 chr21 16978048 16978512 -17929058 - L2 LINE L2 -341 2973 2469 183 348 0 14 chr21 16978633 16978702 -17928868 + MIR SINE MIR 82 149 -59 456 180 60 10 chr21 16978998 16979098 -17928472 + L1PA11 LINE L1 5774 5878 -296 1801 158 19 0 chr21 16979311 16979622 -17927948 + L1PA16 LINE L1 5843 6159 -7 579 191 89 48 chr21 16980623 16980791 -17926779 - MIR SINE MIR -2 260 86 2126 138 0 7 chr21 16981761 16982065 -17925505 + AluSx SINE Alu 1 302 -10 2480 63 0 3 chr21 16982293 16982595 -17924975 + AluY SINE Alu 1 301 -10 1946 113 92 7 chr21 16983017 16983300 -17924270 - AluSp SINE Alu -6 307 1 181 330 21 11 chr21 16983964 16984058 -17923512 + MIR SINE MIR 16 110 -98 1875 139 0 0 chr21 16984453 16984719 -17922851 + AluSx SINE Alu 35 300 -12 340 332 40 104 chr21 16986068 16986442 -17921128 - L2 LINE L2 -4 3268 2919 205 241 86 17 chr21 16987038 16987096 -17920474 - L2 LINE L2 -7 3265 3204 333 288 178 20 chr21 16987885 16988031 -17919539 - MIR SINE MIR -59 203 35 22 0 0 0 chr21 16988598 16988620 -17918950 + AT_rich Low_complexity Low_complexity 1 22 0 723 234 7 0 chr21 16990403 16990557 -17917013 + MER45A DNA AcHobo 1 155 -23 2825 80 3 0 chr21 16990557 16990946 -17916624 + THE1B-int LTR MaLR 1189 1578 -2 1885 126 42 33 chr21 16990946 16991279 -17916291 + THE1B LTR MaLR 29 364 0 439 252 143 0 chr21 16991668 16991815 -17915755 - MER58B DNA MER1_type -6 335 168 475 336 34 13 chr21 16991822 16992057 -17915513 - L1MD3 LINE L1 -139 7856 7617 413 237 0 0 chr21 16992531 16992628 -17914942 + L1MC4 LINE L1 7818 7914 -128 30 0 0 0 chr21 16992709 16992739 -17914831 + AT_rich Low_complexity Low_complexity 1 30 0 1059 206 61 29 chr21 16993913 16994242 -17913328 + MSTD LTR MaLR 1 396 0 272 270 0 67 chr21 16994486 16994529 -17913041 + MIR SINE MIR 64 100 -108 2418 136 64 12 chr21 16994529 16994934 -17912636 - MSTB LTR MaLR 0 426 1 272 270 0 67 chr21 16994934 16994979 -17912591 + MIR SINE MIR 100 146 -62 235 311 27 40 chr21 16995400 16995548 -17912022 + LTR16A1 LTR ERVL 312 457 0 1644 230 113 70 chr21 16996289 16996819 -17910751 + MLT1E LTR MaLR 40 592 -1 606 81 0 0 chr21 16997201 16997288 -17910282 + L1PB2 LINE L1 5389 5475 -676 2885 61 0 0 chr21 16997288 16997648 -17909922 + L1PA6 LINE L1 5782 6141 -13 4606 94 10 21 chr21 16997666 16998308 -17909262 + L1PB2 LINE L1 5460 6095 -56 2218 97 50 42 chr21 16998308 16998669 -17908901 + THE1B LTR MaLR 1 364 0 4606 94 10 21 chr21 16998669 16998726 -17908844 + L1PB2 LINE L1 6095 6151 0 1805 182 35 11 chr21 17000070 17000444 -17907126 + MLT1B LTR MaLR 1 383 -7 2205 156 46 0 chr21 17001823 17002195 -17905375 + MSTD LTR MaLR 1 389 -7 309 238 0 12 chr21 17002380 17002460 -17905110 - MIR SINE MIR -13 249 171 214 215 123 46 chr21 17002500 17002565 -17905005 - MIR SINE MIR -172 90 21 754 194 35 29 chr21 17002740 17002910 -17904660 + MER20 DNA MER1_type 33 203 -16 545 354 11 0 chr21 17005364 17005545 -17902025 + MIR3 SINE MIR 25 207 -1 1895 173 7 0 chr21 17005652 17005953 -17901617 + AluJo SINE Alu 1 303 -9 246 339 0 17 chr21 17006657 17006772 -17900798 - L2 LINE L2 -940 2374 2262 622 302 124 41 chr21 17006892 17007335 -17900235 - L2 LINE L2 -1228 2086 1607 2074 142 37 37 chr21 17007832 17008382 -17899188 - MLT2A2 LTR ERVL 0 554 1 814 287 81 20 chr21 17008542 17008988 -17898582 - MLT1L LTR MaLR -132 483 11 379 120 93 0 chr21 17009365 17009440 -17898130 - L1MA8 LINE L1 -5 6286 6205 1202 195 66 4 chr21 17009442 17009714 -17897856 - L1MD2 LINE L1 -322 6037 5749 1656 205 34 41 chr21 17009720 17010310 -17897260 - L1MD2 LINE L1 -649 5710 5121 3081 151 14 12 chr21 17010400 17010990 -17896580 + L1MA7 LINE L1 5588 6178 -113 2233 105 0 0 chr21 17011527 17011821 -17895749 - AluY SINE Alu -17 294 1 1137 60 0 0 chr21 17011821 17011955 -17895615 - AluY SINE Alu -177 134 1 180 278 0 0 chr21 17011955 17011991 -17895579 + L3 LINE CR1 1530 1565 -12 2609 186 68 17 chr21 17012779 17013355 -17894215 - MER77 LTR ERV1 0 605 1 955 111 12 23 chr21 17014026 17014198 -17893372 + L1MB8 LINE L1 5996 6165 -13 1579 135 46 7 chr21 17014360 17014536 -17893034 - MER46B DNA MER2_type -2495 236 168 2271 100 0 0 chr21 17014536 17014825 -17892745 - AluSx SINE Alu -19 293 5 1579 135 46 7 chr21 17014825 17014929 -17892641 - MER46B DNA MER2_type -2563 168 70 6495 125 109 103 chr21 17014929 17016614 -17890956 + pTR5 LTR ERV1 745 2438 0 265 227 136 0 chr21 17016617 17016683 -17890887 - MER46B DNA MER2_type -286 75 1 358 302 52 0 chr21 17016939 17017055 -17890515 + MLT1H LTR MaLR 195 316 -233 286 128 0 0 chr21 17017107 17017154 -17890416 + MLT1H LTR MaLR 415 461 -88 2145 122 14 3 chr21 17017733 17018028 -17889542 + AluSx SINE Alu 1 298 -14 751 160 0 0 chr21 17018203 17018353 -17889217 + L1 LINE L1 4572 4721 -1425 3397 160 10 0 chr21 17018355 17019352 -17888218 + L1P5 LINE L1 4789 5791 -360 434 172 0 11 chr21 17019364 17019451 -17888119 + L1 LINE L1 4730 4815 -1331 200 200 0 0 chr21 17019459 17019494 -17888076 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 301 310 0 0 chr21 17019494 17019581 -17887989 + L1MC4 LINE L1 6614 6700 -1342 307 284 11 11 chr21 17019545 17019633 -17887937 - L1MC4 LINE L1 -1340 6702 6615 2035 141 13 21 chr21 17019654 17020030 -17887540 + L1PB1 LINE L1 5776 6148 -3 1570 186 51 9 chr21 17020104 17020454 -17887116 + MLT1C LTR MaLR 51 415 -52 293 205 0 39 chr21 17020460 17020538 -17887032 + MER53 DNA DNA 21 95 -94 345 233 0 0 chr21 17020475 17020561 -17887009 - MER53 DNA DNA -22 167 82 207 0 0 0 chr21 17021218 17021241 -17886329 + (CTCA)n Simple_repeat Simple_repeat 1 23 0 1707 52 0 0 chr21 17022128 17022338 -17885232 + L1PA3 LINE L1 5944 6153 -2 754 232 54 6 chr21 17022444 17022612 -17884958 + MER5B DNA MER1_type 1 176 -2 3334 127 9 71 chr21 17023115 17023775 -17883795 + MER41B LTR ERV1 17 635 0 386 143 29 0 chr21 17024225 17024295 -17883275 + MER5B DNA MER1_type 107 178 0 1125 209 72 83 chr21 17024937 17025407 -17882163 + MLT1C LTR MaLR 1 465 -2 233 337 20 10 chr21 17026570 17026671 -17880899 - MIR SINE MIR -87 175 74 2050 117 0 16 chr21 17027477 17027785 -17879785 - AluSx SINE Alu -9 303 1 1697 178 0 18 chr21 17027929 17028215 -17879355 - AluJo SINE Alu -31 281 1 1446 194 0 60 chr21 17028659 17028974 -17878596 + AluJb SINE Alu 1 296 -16 575 271 18 6 chr21 17029675 17029845 -17877725 + MIR SINE MIR 78 249 -13 2499 111 28 14 chr21 17030468 17030827 -17876743 - THE1B LTR MaLR 0 364 1 316 220 6 31 chr21 17031845 17032004 -17875566 + (TATATG)n Simple_repeat Simple_repeat 5 159 0 302 280 23 29 chr21 17032551 17032726 -17874844 + L1MC4a LINE L1 4860 5033 -1113 358 203 0 0 chr21 17033117 17033186 -17874384 + L1MC4a LINE L1 5361 5429 -2379 603 287 72 55 chr21 17033190 17033785 -17873785 + L1MC4a LINE L1 5453 6057 -1751 2111 134 0 16 chr21 17033791 17034104 -17873466 + AluSx SINE Alu 1 308 -4 569 238 6 43 chr21 17034269 17034433 -17873137 - MER45A DNA AcHobo -3 175 18 1034 104 0 0 chr21 17035798 17035932 -17871638 + AluJo SINE Alu 1 134 -178 22 0 0 0 chr21 17035932 17035954 -17871616 + AT_rich Low_complexity Low_complexity 1 22 0 439 231 39 10 chr21 17036283 17036387 -17871183 - MER5A DNA MER1_type -27 162 56 805 198 57 0 chr21 17037756 17037933 -17869637 + MLT1C LTR MaLR 1 187 -280 766 239 67 28 chr21 17038065 17038320 -17869250 + MLT1C LTR MaLR 203 467 0 702 333 51 3 chr21 17038382 17038718 -17868852 + L2 LINE L2 2174 2525 -789 874 310 138 18 chr21 17038721 17039105 -17868465 - LTR16A LTR ERVL -5 445 16 1968 218 46 32 chr21 17039557 17040189 -17867381 - L1M4 LINE L1 -1335 4811 4171 345 217 17 43 chr21 17041589 17041704 -17865866 - LTR33A LTR ERVL -4 519 408 703 195 41 0 chr21 17042445 17042568 -17865002 + FLAM_C SINE Alu 1 128 -5 194 188 0 21 chr21 17042590 17042638 -17864932 + A-rich Low_complexity Low_complexity 2 48 0 740 149 30 6 chr21 17042659 17042827 -17864743 + GA-rich Low_complexity Low_complexity 1 172 0 5209 93 10 0 chr21 17043584 17044368 -17863202 - L1PA4 LINE L1 -2090 4056 3265 9435 67 10 2 chr21 17044368 17045298 -17862272 + L1PA4 LINE L1 4061 4982 -1173 2173 110 0 10 chr21 17045298 17045590 -17861980 + AluY SINE Alu 1 289 -22 9435 67 10 2 chr21 17045590 17046735 -17860835 + L1PA4 LINE L1 4982 6155 0 1671 159 57 42 chr21 17047194 17047578 -17859992 + MLT1B LTR MaLR 1 390 0 26 0 0 0 chr21 17047700 17047726 -17859844 + AT_rich Low_complexity Low_complexity 1 26 0 1580 176 3 43 chr21 17047733 17048034 -17859536 + AluJo SINE Alu 1 289 -23 808 293 61 39 chr21 17048055 17048722 -17858848 + L1MEd LINE L1 979 1746 -744 316 352 65 0 chr21 17049150 17049289 -17858281 + MIR SINE MIR 49 196 -66 2103 151 60 39 chr21 17049327 17049850 -17857720 + MLT2A2 LTR ERVL 1 554 0 2420 80 0 16 chr21 17050878 17051192 -17856378 - AluSc SINE Alu 0 309 1 366 216 21 21 chr21 17051443 17051540 -17856030 + MER34 LTR ERV1 1 97 -445 832 207 106 28 chr21 17051596 17052086 -17855484 + LTR48B LTR ERV1 82 644 0 326 264 114 14 chr21 17052681 17052821 -17854749 + MIR SINE MIR 103 256 -6 246 62 0 0 chr21 17053917 17053949 -17853621 + (TA)n Simple_repeat Simple_repeat 2 33 0 391 267 85 51 chr21 17055232 17055408 -17852162 + MER5A DNA MER1_type 7 188 -1 548 216 54 30 chr21 17055418 17055541 -17852029 + MER5B DNA MER1_type 5 135 -43 279 79 0 0 chr21 17055541 17055579 -17851991 + (TTG)n Simple_repeat Simple_repeat 2 39 0 548 216 54 30 chr21 17055579 17055622 -17851948 + MER5B DNA MER1_type 135 175 -3 354 276 51 0 chr21 17056240 17056338 -17851232 - MER81 DNA DNA 0 114 12 1205 150 5 0 chr21 17056527 17056714 -17850856 - MER5A DNA MER1_type -1 188 1 402 180 120 0 chr21 17057104 17057204 -17850366 - MER81 DNA DNA -2 112 1 217 329 0 0 chr21 17058420 17058490 -17849080 - L2 LINE L2 -2 3311 3242 575 318 81 13 chr21 17058797 17059033 -17848537 - MIR SINE MIR -3 259 8 217 250 18 0 chr21 17059301 17059357 -17848213 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 373 333 32 19 chr21 17060348 17060504 -17847066 - MER5A DNA MER1_type -2 187 30 1616 196 85 35 chr21 17060614 17060991 -17846579 + MSTD LTR MaLR 1 396 0 1803 138 154 16 chr21 17061519 17061890 -17845680 + MSTA LTR MaLR 1 422 -6 2257 109 3 0 chr21 17061941 17062243 -17845327 + AluY SINE Alu 1 303 -8 2202 119 3 3 chr21 17062507 17062847 -17844723 + AluSx SINE Alu 1 522 -90 1326 78 0 0 chr21 17062847 17063027 -17844543 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2202 119 3 3 chr21 17063027 17063119 -17844451 + AluSx SINE Alu 521 612 0 315 297 85 17 chr21 17064358 17064476 -17843094 - MIR SINE MIR -64 144 19 379 306 41 41 chr21 17065053 17065200 -17842370 + MIR SINE MIR 17 163 -99 540 215 74 103 chr21 17065200 17065482 -17842088 + MER77 LTR ERV1 1 272 -290 851 303 64 0 chr21 17065492 17065882 -17841688 + L1PB1 LINE L1 6 420 -6443 1866 186 22 14 chr21 17066050 17066465 -17841105 + L1PB1 LINE L1 629 1046 -5817 7299 143 33 6 chr21 17066468 17067972 -17839598 + L1PB1 LINE L1 1093 2780 -4083 7757 198 11 19 chr21 17067979 17069597 -17837973 + L1PB1 LINE L1 2826 4455 -2412 2484 84 0 0 chr21 17069597 17069907 -17837663 + AluY SINE Alu 1 310 -1 7757 198 11 19 chr21 17069907 17070002 -17837568 + L1PB1 LINE L1 4455 4549 -2318 2394 79 3 25 chr21 17070002 17070317 -17837253 + AluSp SINE Alu 1 308 -5 330 26 0 0 chr21 17070317 17070356 -17837214 + (TA)n Simple_repeat Simple_repeat 1 39 0 7757 198 11 19 chr21 17070356 17072342 -17835228 + L1PB1 LINE L1 4547 6507 -360 694 39 105 5 chr21 17072349 17072789 -17834781 + (TA)n Simple_repeat Simple_repeat 1 659 0 2119 141 21 16 chr21 17072789 17073165 -17834405 + L1PB1 LINE L1 6489 6866 -1 1259 220 23 16 chr21 17073169 17073473 -17834097 + MER68 LTR ERV1 257 562 0 221 167 33 17 chr21 17073572 17073632 -17833938 + (TTATA)n Simple_repeat Simple_repeat 1 61 0 375 182 13 0 chr21 17073918 17073995 -17833575 + MLT1L LTR MaLR 1 78 -537 873 134 7 36 chr21 17074528 17074801 -17832769 - THE1C LTR MaLR 0 375 36 483 322 105 15 chr21 17075884 17076222 -17831348 - L1MC/D LINE L1 -510 5656 5303 722 337 54 20 chr21 17076401 17077127 -17830443 - L1MC/D LINE L1 -1089 5057 4280 5308 128 2 8 chr21 17077130 17077975 -17829595 - L1PA15 LINE L1 -1 6164 5325 5456 141 7 4 chr21 17077977 17079662 -17827908 - L1PA15 LINE L1 -5 6160 4457 423 345 114 15 chr21 17079677 17080089 -17827481 - L1MC/D LINE L1 -1866 4280 3828 5082 214 34 24 chr21 17080144 17081559 -17826011 + L1PA13 LINE L1 1046 2486 -4311 2626 27 0 0 chr21 17081559 17081852 -17825718 - AluY SINE Alu -2 309 17 5082 214 34 24 chr21 17081852 17082073 -17825497 + L1PA13 LINE L1 2486 2703 -4094 521 80 0 0 chr21 17082074 17082149 -17825421 - MLT2A2 LTR ERVL 0 453 379 26061 88 7 4 chr21 17082151 17085789 -17821781 - HERVL-A1 LTR ERVL -2002 3652 1 3091 60 17 95 chr21 17085789 17086271 -17821299 - MLT2A1 LTR ERVL 0 444 1 3873 213 23 15 chr21 17086277 17087345 -17820225 + L1PA13 LINE L1 2706 3781 -3016 2159 127 0 3 chr21 17087477 17087776 -17819794 + AluSx SINE Alu 1 298 -14 2036 241 60 29 chr21 17087833 17088414 -17819156 + L1PA12 LINE L1 4 602 -6979 24 77 0 0 chr21 17088561 17088613 -17818957 + AT_rich Low_complexity Low_complexity 1 52 0 478 155 10 10 chr21 17089887 17089990 -17817580 + GA-rich Low_complexity Low_complexity 2 104 0 400 196 49 0 chr21 17090121 17090223 -17817347 + FRAM SINE Alu 70 176 0 574 75 0 0 chr21 17091322 17091402 -17816168 + HERVL-A1 LTR ERVL 5575 5654 0 2743 89 8 2 chr21 17091402 17091797 -17815773 + MLT2A1 LTR ERVL 1 397 -47 1229 139 16 1 chr21 17091816 17092038 -17815532 + ERVL-A1 LTR ERVL 264 471 -5183 6625 72 39 0 chr21 17092035 17092941 -17814629 + ERVL-A1 LTR ERVL 943 1883 -3771 8324 68 11 6 chr21 17092939 17093703 -17813867 + HERVL-A1 LTR ERVL 4526 5298 -356 2722 23 0 0 chr21 17093703 17094007 -17813563 + AluYb8 SINE Alu 2 305 -13 8324 68 11 6 chr21 17094007 17094366 -17813204 + HERVL-A1 LTR ERVL 5298 5654 0 3080 78 31 0 chr21 17094366 17094755 -17812815 + MLT2A1 LTR ERVL 1 405 -39 540 0 0 0 chr21 17094755 17094815 -17812755 + (TA)n Simple_repeat Simple_repeat 1 60 0 3080 78 31 0 chr21 17094815 17094848 -17812722 + MLT2A1 LTR ERVL 405 436 -8 2140 120 0 10 chr21 17095176 17095475 -17812095 - AluSx SINE Alu -16 296 1 431 307 41 75 chr21 17095831 17096150 -17811420 + L2 LINE L2 2175 2482 -832 745 75 45 8 chr21 17096153 17096287 -17811283 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 342 361 77 46 chr21 17096355 17096498 -17811072 + L2 LINE L2 2550 2687 -627 2083 144 0 3 chr21 17096498 17096811 -17810759 - AluSx SINE Alu 0 312 1 342 361 77 46 chr21 17096811 17097082 -17810488 + L2 LINE L2 2687 2977 -337 813 131 0 51 chr21 17097368 17097505 -17810065 + AluJb SINE Alu 4 133 -179 978 238 108 7 chr21 17097538 17097807 -17809763 + AluSx SINE Alu 1 296 -16 503 171 0 11 chr21 17097848 17097936 -17809634 + AluSc SINE Alu 95 181 -128 1062 167 6 0 chr21 17097937 17098105 -17809465 + AluSg/x SINE Alu 140 308 -2 629 271 139 26 chr21 17098148 17098626 -17808944 + L1MC/D LINE L1 5257 5786 -335 21 57 0 0 chr21 17098704 17098739 -17808831 + AT_rich Low_complexity Low_complexity 1 35 0 972 189 36 40 chr21 17098837 17099059 -17808511 - LTR40b LTR ERVL 0 462 242 338 228 56 2 chr21 17099218 17099377 -17808193 - L1 LINE L1 -1071 5075 4910 1872 158 0 7 chr21 17099744 17100041 -17807529 + AluJb SINE Alu 1 295 -17 1067 287 76 14 chr21 17100158 17100803 -17806767 - L1 LINE L1 -1810 4336 3652 311 148 13 0 chr21 17101458 17101523 -17806047 - L1MC2 LINE L1 0 7995 6266 757 171 11 63 chr21 17101551 17101726 -17805844 - L1MC2 LINE L1 -62 6282 6117 1842 142 4 4 chr21 17101748 17102022 -17805548 - AluSq SINE Alu -16 297 24 461 314 23 10 chr21 17102046 17102349 -17805221 - L1 LINE L1 -3240 2906 2600 2140 102 156 8 chr21 17102519 17102892 -17804678 - MSTA LTR MaLR 0 428 1 1264 231 57 21 chr21 17103041 17103427 -17804143 - MLT1C LTR MaLR -62 405 6 1801 162 83 14 chr21 17103450 17103813 -17803757 - MER61D LTR ERV1 0 501 114 1708 206 83 12 chr21 17103936 17104359 -17803211 - MLT2B1 LTR ERVL -67 453 1 17575 148 41 13 chr21 17104365 17107465 -17800105 - ERVL-B1 LTR ERVL -14 5750 2565 23 54 0 0 chr21 17107490 17107527 -17800043 + AT_rich Low_complexity Low_complexity 1 37 0 630 83 9 28 chr21 17108328 17108437 -17799133 + (GGGA)n Simple_repeat Simple_repeat 2 108 0 781 181 5 40 chr21 17108414 17108975 -17798595 + GA-rich Low_complexity Low_complexity 1 541 0 326 284 9 37 chr21 17109811 17109920 -17797650 + MIR SINE MIR 54 159 -103 30 27 0 0 chr21 17109949 17109986 -17797584 + AT_rich Low_complexity Low_complexity 1 37 0 208 117 83 0 chr21 17110252 17110312 -17797258 + (TA)n Simple_repeat Simple_repeat 1 65 0 1143 171 0 0 chr21 17110421 17110596 -17796974 - AluJb SINE Alu -4 308 134 2029 118 10 0 chr21 17110596 17110884 -17796686 - AluSx SINE Alu -21 291 1 25 31 0 0 chr21 17111168 17111200 -17796370 + AT_rich Low_complexity Low_complexity 1 32 0 2157 111 0 35 chr21 17111794 17112110 -17795460 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr21 17112110 17112132 -17795438 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr21 17112273 17112297 -17795273 + (A)n Simple_repeat Simple_repeat 1 24 0 1874 168 0 19 chr21 17112970 17113280 -17794290 - AluJb SINE Alu -6 306 3 253 194 0 48 chr21 17113285 17113347 -17794223 + MLT1K LTR MaLR 522 580 -8 236 280 76 0 chr21 17113843 17113961 -17793609 + L1ME LINE L1 5771 5897 -224 22 0 0 0 chr21 17114420 17114442 -17793128 + AT_rich Low_complexity Low_complexity 1 22 0 933 154 0 26 chr21 17115087 17115243 -17792327 - FRAM SINE Alu -10 156 5 446 143 0 0 chr21 17115988 17116065 -17791505 - Charlie5 DNA MER1_type -2516 96 20 21 57 0 0 chr21 17116184 17116219 -17791351 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr21 17117530 17117551 -17790019 + AT_rich Low_complexity Low_complexity 1 21 0 2102 110 0 10 chr21 17117562 17117862 -17789708 - AluSx SINE Alu -15 297 1 25 51 0 0 chr21 17118250 17118289 -17789281 + AT_rich Low_complexity Low_complexity 1 39 0 407 105 0 0 chr21 17118301 17118358 -17789212 - FRAM/FAM SINE Alu -94 82 26 2476 82 0 0 chr21 17119692 17119998 -17787572 - AluY SINE Alu -5 306 1 1743 185 22 8 chr21 17120699 17121055 -17786515 - L1 LINE L1 -2064 4082 3722 308 200 0 52 chr21 17121055 17121127 -17786443 - MER65B LTR ERV1 -422 109 44 369 0 0 0 chr21 17121127 17121168 -17786402 + (TG)n Simple_repeat Simple_repeat 2 42 0 308 200 0 52 chr21 17121168 17121210 -17786360 - MER65B LTR ERV1 -487 44 1 1890 184 3 0 chr21 17121243 17121553 -17786017 - AluJo SINE Alu -1 311 1 5976 155 8 18 chr21 17121675 17122810 -17784760 + L1MC1 LINE L1 5209 6333 0 2822 16 0 0 chr21 17122817 17123128 -17784442 + AluY SINE Alu 1 311 0 1005 173 4 40 chr21 17123133 17123359 -17784211 + L1MC1 LINE L1 6116 6333 0 24 32 0 0 chr21 17123407 17123438 -17784132 + AT_rich Low_complexity Low_complexity 1 31 0 201 176 0 0 chr21 17123478 17123512 -17784058 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1308 175 99 32 chr21 17125064 17125407 -17782163 + MLT1A2 LTR MaLR 1 366 -8 2000 144 8 35 chr21 17125414 17125666 -17781904 + MER47A DNA MER2_type 2 242 -2081 2599 48 0 6 chr21 17125666 17125977 -17781593 + AluY SINE Alu 1 309 -2 2000 144 8 35 chr21 17125977 17126099 -17781471 + MER47A DNA MER2_type 242 366 0 2218 140 3 20 chr21 17126842 17127185 -17780385 + MER1B DNA MER1_type 1 337 0 2127 164 55 57 chr21 17127311 17127800 -17779770 + MLT1D LTR MaLR 18 505 0 858 205 68 22 chr21 17128036 17128146 -17779424 + MER33 DNA MER1_type 29 132 -2453 1997 138 20 7 chr21 17128146 17128444 -17779126 - AluSx SINE Alu -9 303 2 858 205 68 22 chr21 17128444 17128611 -17778959 + MER33 DNA MER1_type 132 319 -5 7104 197 87 24 chr21 17130457 17131404 -17776166 - Charlie6 DNA MER1_type -1233 2267 1380 2318 82 3 0 chr21 17131404 17131696 -17775874 - AluSc SINE Alu -16 293 1 7104 197 87 24 chr21 17131696 17132320 -17775250 - Charlie6 DNA MER1_type -2120 1380 796 2290 42 11 18 chr21 17132320 17132629 -17774941 + AluY SINE Alu 1 307 0 204 40 0 0 chr21 17132630 17132655 -17774915 + (TA)n Simple_repeat Simple_repeat 1 25 0 7104 197 87 24 chr21 17132655 17132892 -17774678 - Charlie6 DNA MER1_type -2703 797 342 549 273 74 0 chr21 17132954 17133130 -17774440 - Charlie6 DNA MER1_type -3296 204 16 1816 120 36 45 chr21 17133427 17133736 -17773834 - AluSc SINE Alu -3 306 1 700 168 25 0 chr21 17133898 17134017 -17773553 - LTR12 LTR ERV1 -234 437 316 243 300 10 0 chr21 17134017 17134117 -17773453 - LTR30 LTR ERV1 -98 624 524 892 131 30 90 chr21 17134204 17134448 -17773122 - LTR12 LTR ERV1 -455 1983 16 1757 193 3 7 chr21 17135651 17135957 -17771613 + AluSg SINE Alu 1 305 -5 220 239 0 0 chr21 17137411 17137457 -17770113 + (TA)n Simple_repeat Simple_repeat 2 47 0 1147 184 103 55 chr21 17138398 17138746 -17768824 + MLT1A1 LTR MaLR 1 365 0 357 231 91 33 chr21 17138852 17138973 -17768597 - MIR SINE MIR -61 147 20 2061 129 0 7 chr21 17139095 17139406 -17768164 - AluSx SINE Alu 0 309 1 2237 112 3 0 chr21 17139512 17139817 -17767753 - AluSp SINE Alu -6 307 2 487 261 17 8 chr21 17140393 17140512 -17767058 + L2 LINE L2 3194 3313 0 690 167 8 8 chr21 17140570 17140690 -17766880 - FLAM_A SINE Alu -16 126 7 2284 119 0 0 chr21 17140710 17141012 -17766558 - AluSx SINE Alu -10 302 1 663 272 84 10 chr21 17141022 17141224 -17766346 - MIR SINE MIR -44 218 2 247 245 0 0 chr21 17143148 17143201 -17764369 + (TAG)n Simple_repeat Simple_repeat 2 54 0 292 195 127 12 chr21 17143211 17143344 -17764226 - MIR SINE MIR -13 249 60 302 250 21 10 chr21 17143346 17143442 -17764128 - L1M4 LINE L1 -2572 3574 3478 662 157 0 0 chr21 17143484 17143592 -17763978 - AluSx SINE Alu -21 289 182 900 158 0 0 chr21 17143592 17143725 -17763845 - AluSx SINE Alu -180 133 1 239 230 162 14 chr21 17143962 17144036 -17763534 + MIR SINE MIR 60 144 -64 775 263 20 34 chr21 17144155 17144449 -17763121 - L1M4 LINE L1 -3528 2618 2328 1517 209 25 19 chr21 17144449 17144812 -17762758 - MLT1A1 LTR MaLR 0 365 1 775 263 20 34 chr21 17144812 17144875 -17762695 - L1M4 LINE L1 -3818 2328 2266 446 239 34 17 chr21 17144894 17145011 -17762559 + MLT1A2 LTR MaLR 1 119 -255 1037 147 95 9 chr21 17145662 17145894 -17761676 - L1MA9 LINE L1 -43 6269 6018 1834 167 0 35 chr21 17145912 17146229 -17761341 - AluJo SINE Alu -6 306 1 561 226 119 6 chr21 17146275 17146306 -17761264 + MIR SINE MIR 66 92 -170 1688 173 28 3 chr21 17146306 17146595 -17760975 - AluJo SINE Alu -16 296 1 561 226 119 6 chr21 17146595 17146731 -17760839 + MIR SINE MIR 92 252 -10 222 138 11 103 chr21 17147639 17147726 -17759844 + A-rich Low_complexity Low_complexity 6 84 0 633 201 139 74 chr21 17148079 17148402 -17759168 + MER7A DNA MER2_type 1 342 -4 1745 138 33 33 chr21 17148819 17149124 -17758446 - AluSx SINE Alu -7 305 1 185 222 0 0 chr21 17149143 17149179 -17758391 - MIR3 SINE MIR -23 185 150 185 222 0 0 chr21 17149187 17149223 -17758347 - MIR3 SINE MIR -23 185 150 197 268 0 0 chr21 17149231 17149272 -17758298 - MIR3 SINE MIR -23 185 145 1056 192 0 0 chr21 17149774 17149946 -17757624 - FAM SINE Alu -3 172 1 279 104 62 0 chr21 17149951 17149999 -17757571 - AluSp/q SINE Alu -9 294 244 230 306 24 32 chr21 17150216 17150340 -17757230 + MLT1G LTR MaLR 1 123 -467 568 244 143 40 chr21 17150459 17150787 -17756783 + L1M4 LINE L1 3681 4042 -2104 1729 211 112 61 chr21 17151456 17152196 -17755374 - Charlie2 DNA MER1_type -6 2856 2055 3508 75 36 21 chr21 17152196 17152729 -17754841 - L1MA2 LINE L1 0 6304 5764 1729 211 112 61 chr21 17152729 17152940 -17754630 - Charlie2 DNA MER1_type -807 2055 1856 441 232 87 27 chr21 17153028 17153213 -17754357 - Charlie2 DNA MER1_type -2542 240 45 631 101 0 10 chr21 17153799 17153898 -17753672 + MER4A LTR ERV1 1 98 -566 2484 109 33 10 chr21 17153898 17154293 -17753277 + MER4A LTR ERV1 261 664 0 301 314 100 7 chr21 17155257 17155397 -17752173 + L1ME3A LINE L1 724 876 -5194 314 303 79 22 chr21 17155406 17155859 -17751711 + L1ME3A LINE L1 893 1405 -4675 1984 145 0 0 chr21 17155998 17156281 -17751289 + AluSx SINE Alu 4 286 -26 1859 146 0 11 chr21 17156331 17156611 -17750959 - AluJb SINE Alu -18 294 18 6814 57 23 0 chr21 17156931 17158280 -17749290 + L1PA8 LINE L1 4801 6172 0 315 284 89 42 chr21 17158309 17158499 -17749071 + L1ME3A LINE L1 4956 5154 -926 711 313 99 74 chr21 17158523 17158848 -17748722 + L1ME3A LINE L1 5226 5541 -563 216 0 0 0 chr21 17158848 17158872 -17748698 + (TA)n Simple_repeat Simple_repeat 1 24 0 1656 96 137 26 chr21 17158882 17159153 -17748417 - AluSx SINE Alu 0 302 2 711 313 99 74 chr21 17159153 17159384 -17748186 + L1ME3A LINE L1 5549 5807 -297 23 86 0 0 chr21 17159597 17159655 -17747915 + AT_rich Low_complexity Low_complexity 1 58 0 333 82 0 0 chr21 17162432 17162481 -17745089 + (TG)n Simple_repeat Simple_repeat 2 50 0 2091 106 14 7 chr21 17163092 17163384 -17744186 + AluSq SINE Alu 1 294 -19 2437 77 3 0 chr21 17165050 17165348 -17742222 - AluSp SINE Alu -14 299 1 214 359 87 74 chr21 17165348 17165671 -17741899 + L2 LINE L2 2946 3272 0 1776 136 166 0 chr21 17165696 17165994 -17741576 + MSTA LTR MaLR 1 373 -55 897 133 0 15 chr21 17165994 17166129 -17741441 - FLAM_C SINE Alu 0 133 1 1776 136 166 0 chr21 17166129 17166197 -17741373 + MSTA LTR MaLR 373 428 0 621 111 11 0 chr21 17166279 17166369 -17741201 - AluJ/FLAM SINE Alu -221 91 1 2557 53 0 0 chr21 17166932 17167231 -17740339 + AluY SINE Alu 2 300 -11 324 203 0 14 chr21 17168502 17168576 -17738994 + Charlie8 DNA MER1_type 109 181 -2236 696 98 146 0 chr21 17168772 17168895 -17738675 - L1MA3 LINE L1 0 6305 6165 738 242 91 49 chr21 17168997 17169020 -17738550 + L1MC4 LINE L1 7289 7310 -732 1434 132 35 0 chr21 17169020 17169247 -17738323 + MER46A DNA MER2_type 2 236 0 738 242 91 49 chr21 17169247 17169860 -17737710 + L1MC4 LINE L1 7310 8042 0 2258 180 72 30 chr21 17169917 17170377 -17737193 + L1MB7 LINE L1 5616 6104 -80 1086 186 87 60 chr21 17170377 17170711 -17736859 - MER2 DNA MER2_type 0 344 2 2258 180 72 30 chr21 17170711 17170788 -17736782 + L1MB7 LINE L1 6104 6176 -8 21 0 0 0 chr21 17171393 17171414 -17736156 + AT_rich Low_complexity Low_complexity 1 21 0 639 140 0 0 chr21 17171562 17171662 -17735908 - AluJb SINE Alu -22 290 191 26 0 0 0 chr21 17172000 17172026 -17735544 + AT_rich Low_complexity Low_complexity 1 26 0 1894 140 38 0 chr21 17172178 17172470 -17735100 + AluJb SINE Alu 1 303 -9 230 224 15 45 chr21 17173877 17173944 -17733626 - L2 LINE L2 -78 3235 3171 263 329 111 75 chr21 17173963 17174361 -17733209 + L2 LINE L2 2888 3299 -14 23 54 0 0 chr21 17174591 17174628 -17732942 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 17174940 17174970 -17732600 + AT_rich Low_complexity Low_complexity 1 30 0 1949 151 3 0 chr21 17176312 17176596 -17730974 + AluSx SINE Alu 1 285 -27 222 37 0 0 chr21 17176601 17176628 -17730942 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 223 204 23 0 chr21 17178449 17178493 -17729077 + L2 LINE L2 3227 3271 -1 22 35 0 0 chr21 17178795 17178824 -17728746 + AT_rich Low_complexity Low_complexity 1 29 0 1910 144 3 7 chr21 17179284 17179583 -17727987 + AluSg SINE Alu 2 299 -11 1924 138 3 10 chr21 17179630 17179928 -17727642 - AluSq SINE Alu 0 313 18 645 292 47 33 chr21 17180102 17180403 -17727167 - L1ME LINE L1 -312 5809 5505 2147 140 58 14 chr21 17180720 17181135 -17726435 - L1MB2 LINE L1 -3 6168 5736 472 289 60 48 chr21 17181576 17181825 -17725745 - L1ME LINE L1 -1678 4468 4217 1569 174 107 75 chr21 17181826 17181890 -17725680 + L1MD2 LINE L1 5865 5926 -433 1962 139 10 3 chr21 17181890 17182185 -17725385 - AluJb SINE Alu -14 298 2 1569 174 107 75 chr21 17182185 17182597 -17724973 + L1MD2 LINE L1 5926 6356 -3 1677 178 7 0 chr21 17183062 17183363 -17724207 + AluJo SINE Alu 1 303 0 4759 147 44 31 chr21 17185907 17186560 -17721010 + L1MA4 LINE L1 4746 5389 -911 710 169 24 0 chr21 17186560 17186684 -17720886 + FLAM_C SINE Alu 2 128 -5 4759 147 44 31 chr21 17186684 17187015 -17720555 + L1MA4 LINE L1 5389 5714 -586 2399 96 0 0 chr21 17187015 17187317 -17720253 + AluSg SINE Alu 1 302 -8 4759 147 44 31 chr21 17187317 17187779 -17719791 + L1MA4 LINE L1 5714 6289 -11 711 172 0 23 chr21 17189526 17189654 -17717916 - FLAM_A SINE Alu -5 137 13 192 231 0 0 chr21 17190294 17190346 -17717224 + GA-rich Low_complexity Low_complexity 4 55 0 377 258 125 8 chr21 17190483 17190603 -17716967 - MIR SINE MIR -93 169 36 2020 130 33 0 chr21 17191457 17191757 -17715813 + AluSx SINE Alu 1 310 -2 210 252 126 56 chr21 17192394 17192537 -17715033 + L2 LINE L2 3075 3227 -86 468 329 27 7 chr21 17192989 17193135 -17714435 + MIR3 SINE MIR 44 192 -16 1432 129 0 31 chr21 17193171 17193396 -17714174 + AluSg/x SINE Alu 73 290 -20 14783 125 28 7 chr21 17193601 17195968 -17711602 + Tigger1 DNA MER2_type 1 2416 -2 1016 125 23 17 chr21 17196365 17196541 -17711029 + L1MB2 LINE L1 5995 6171 0 707 179 8 0 chr21 17197321 17197444 -17710126 - FLAM_A SINE Alu -9 124 1 4375 168 68 12 chr21 17198569 17199383 -17708187 + MER21B LTR ERV1 5 863 0 2256 96 24 0 chr21 17199986 17200279 -17707291 - AluSp SINE Alu -13 300 1 2377 75 0 3 chr21 17200311 17200605 -17706965 + AluSq SINE Alu 1 293 -20 24 0 0 0 chr21 17200715 17200739 -17706831 + AT_rich Low_complexity Low_complexity 1 24 0 739 173 47 0 chr21 17201223 17201350 -17706220 - FLAM_C SINE Alu 0 133 1 1703 205 15 9 chr21 17203356 17203687 -17703883 + MLT1A1 LTR MaLR 1 333 -32 225 176 0 59 chr21 17203808 17203859 -17703711 - MER2 DNA MER2_type -1 343 296 339 232 0 0 chr21 17203837 17203893 -17703677 + MER2 DNA MER2_type 289 344 0 769 251 49 35 chr21 17203911 17204266 -17703304 + L1MDa LINE L1 1358 1726 -4814 332 296 71 66 chr21 17204276 17204438 -17703132 + L1MDa LINE L1 1791 1956 -4765 2050 150 3 0 chr21 17204438 17204744 -17702826 + AluSx SINE Alu 1 307 -5 332 296 71 66 chr21 17204744 17204777 -17702793 + L1MDa LINE L1 1956 1987 -4734 27 29 0 0 chr21 17204862 17204896 -17702674 + AT_rich Low_complexity Low_complexity 1 34 0 794 236 111 65 chr21 17205066 17205739 -17701831 + L1M4 LINE L1 4634 5337 -809 858 328 37 54 chr21 17205742 17206147 -17701423 + L1ME2 LINE L1 26 423 -5647 492 214 0 10 chr21 17206147 17206245 -17701325 - AluJo SINE Alu -152 160 64 1027 234 60 33 chr21 17206246 17206695 -17700875 + L1ME2 LINE L1 436 896 -5174 763 134 0 0 chr21 17206687 17206821 -17700749 + L1ME1 LINE L1 5316 5449 -713 904 202 132 0 chr21 17207055 17207268 -17700302 + L1ME1 LINE L1 5447 5687 -479 866 216 86 88 chr21 17207271 17207633 -17699937 + L1ME1 LINE L1 5801 6161 -5 2177 133 0 0 chr21 17207690 17207990 -17699580 + AluSx SINE Alu 1 300 -12 372 248 8 17 chr21 17208006 17208123 -17699447 + L1ME2 LINE L1 4454 4569 -1511 1549 194 14 17 chr21 17208133 17208427 -17699143 - AluJb SINE Alu -19 293 1 2345 103 0 0 chr21 17208464 17208766 -17698804 + AluSx SINE Alu 1 302 -10 1936 144 14 0 chr21 17208817 17209102 -17698468 + AluSx SINE Alu 1 289 -23 1498 109 5 9 chr21 17209102 17209313 -17698257 + AluSg/x SINE Alu 84 293 -17 342 321 34 65 chr21 17209335 17209411 -17698159 + L1ME2 LINE L1 4699 4776 -1304 1698 158 17 17 chr21 17209411 17209703 -17697867 - AluJb SINE Alu -19 293 2 342 321 34 65 chr21 17209703 17209888 -17697682 + L1ME2 LINE L1 4776 4952 -1128 471 360 98 15 chr21 17210550 17210878 -17696692 + L1ME2 LINE L1 5439 5793 -305 2500 159 59 35 chr21 17210971 17211060 -17696510 - MER82 DNA MER2_type 0 653 568 2254 106 0 7 chr21 17211060 17211362 -17696208 + AluSq SINE Alu 1 300 -13 2500 159 59 35 chr21 17211362 17211763 -17695807 - MER82 DNA MER2_type -85 568 151 1362 30 0 12 chr21 17211764 17211931 -17695639 + L1PA3 LINE L1 5991 6155 0 26 30 0 0 chr21 17212676 17212709 -17694861 + AT_rich Low_complexity Low_complexity 1 33 0 2118 134 0 7 chr21 17213305 17213611 -17693959 + AluSx SINE Alu 1 304 -8 715 223 97 36 chr21 17214221 17214468 -17693102 - MIR SINE MIR 0 262 1 312 289 35 0 chr21 17214932 17215046 -17692524 - L2 LINE L2 -457 2857 2740 404 301 95 21 chr21 17215397 17215730 -17691840 + L1MC/D LINE L1 5506 5854 -302 21 0 0 0 chr21 17216465 17216486 -17691084 + AT_rich Low_complexity Low_complexity 1 21 0 2190 112 3 10 chr21 17216549 17216853 -17690717 + AluSx SINE Alu 1 302 -10 2304 113 0 3 chr21 17217030 17217332 -17690238 - AluSx SINE Alu -11 301 1 274 242 65 98 chr21 17218530 17218745 -17688825 - MER112 DNA MER1_type -7 253 46 327 239 22 65 chr21 17219135 17219227 -17688343 + Charlie8 DNA MER1_type 1528 1615 -802 2445 84 3 3 chr21 17219233 17219541 -17688029 + AluSg SINE Alu 1 308 -2 2063 144 0 0 chr21 17219556 17219854 -17687716 + AluSx SINE Alu 1 298 -14 704 196 26 20 chr21 17219863 17220016 -17687554 + Charlie8 DNA MER1_type 1620 1773 -644 287 94 245 0 chr21 17220028 17220056 -17687514 - MER41B LTR ERV1 -88 547 527 2294 110 7 0 chr21 17220056 17220365 -17687205 + AluSq SINE Alu 1 311 -2 287 94 245 0 chr21 17220365 17220389 -17687181 - MER41B LTR ERV1 -108 527 482 26 50 0 0 chr21 17220396 17220436 -17687134 + AT_rich Low_complexity Low_complexity 1 40 0 244 189 68 27 chr21 17220554 17220628 -17686942 + Charlie8 DNA MER1_type 2008 2084 -333 1591 136 0 33 chr21 17221097 17221340 -17686230 + AluSx SINE Alu 1 235 -77 187 291 35 23 chr21 17221393 17221479 -17686091 + L2 LINE L2 2931 3017 -255 355 255 57 43 chr21 17221681 17221822 -17685748 + MIR SINE MIR 52 194 -68 1137 240 114 41 chr21 17221826 17222289 -17685281 + L1MC4 LINE L1 7178 7674 -368 1148 184 43 0 chr21 17222319 17222526 -17685044 + AluSg/x SINE Alu 83 298 -12 779 185 13 25 chr21 17222531 17222688 -17684882 + AluJb SINE Alu 156 310 -2 772 235 68 51 chr21 17222688 17223024 -17684546 + L1MC4 LINE L1 7700 8041 -1 290 321 121 5 chr21 17223562 17223752 -17683818 - L2 LINE L2 -390 2924 2713 265 152 91 30 chr21 17224618 17224684 -17682886 + MER5A DNA MER1_type 36 105 -84 720 230 123 37 chr21 17224981 17225501 -17682069 + LTR50 LTR ERVL 123 650 -145 300 204 68 23 chr21 17225498 17225586 -17681984 + LTR33A LTR ERVL 426 517 -6 2066 111 10 3 chr21 17225602 17225890 -17681680 + AluSx SINE Alu 1 290 -22 248 91 23 0 chr21 17226148 17226192 -17681378 + (TA)n Simple_repeat Simple_repeat 1 45 0 2217 115 3 0 chr21 17226201 17226506 -17681064 + AluSx SINE Alu 1 306 -6 2215 127 0 0 chr21 17226685 17226985 -17680585 + AluSx SINE Alu 1 300 -12 2133 141 0 0 chr21 17227959 17228264 -17679306 + AluSx SINE Alu 1 305 -7 22 0 0 0 chr21 17228364 17228386 -17679184 + AT_rich Low_complexity Low_complexity 1 22 0 2394 88 0 0 chr21 17228548 17228843 -17678727 + AluY SINE Alu 1 295 -16 349 118 0 0 chr21 17229628 17229679 -17677891 - MSTA LTR MaLR -377 51 1 2595 50 0 0 chr21 17229981 17230280 -17677290 + AluY SINE Alu 8 306 -5 456 356 89 37 chr21 17230507 17231370 -17676200 + L2 LINE L2 500 1407 -1907 3791 139 66 17 chr21 17231370 17232765 -17674805 + pTR5 LTR ERV1 748 2451 0 2306 88 0 3 chr21 17233185 17233479 -17674091 - AluSx SINE Alu -19 293 1 246 160 80 0 chr21 17233639 17233714 -17673856 + (TA)n Simple_repeat Simple_repeat 2 82 0 29 0 0 0 chr21 17234694 17234723 -17672847 + AT_rich Low_complexity Low_complexity 1 29 0 2007 92 11 25 chr21 17234723 17235007 -17672563 + AluSx SINE Alu 33 312 0 2164 124 3 3 chr21 17235267 17235573 -17671997 + AluSx SINE Alu 1 306 -6 2176 102 0 14 chr21 17236826 17237121 -17670449 + AluSx SINE Alu 1 291 -21 694 169 7 37 chr21 17238146 17238282 -17669288 - AluJo SINE Alu -176 136 5 725 149 0 0 chr21 17238768 17238875 -17668695 - Tigger3(Golem) DNA MER2_type -2 3027 2921 467 212 0 0 chr21 17238994 17239074 -17668496 - Tigger3(Golem) DNA MER2_type -2949 80 1 1673 179 14 3 chr21 17240470 17240755 -17666815 - AluJo SINE Alu -23 289 2 2519 66 0 3 chr21 17240764 17241065 -17666505 - AluY SINE Alu -11 300 1 676 296 33 29 chr21 17241303 17241610 -17665960 - L1MC4a LINE L1 -1940 5868 5561 1903 146 9 16 chr21 17241696 17242011 -17665559 + AluSq SINE Alu 1 313 0 5889 69 26 56 chr21 17242014 17242903 -17664667 + SVA Other Other 5 866 -520 1290 38 0 34 chr21 17242922 17243131 -17664439 + SVA Other Other 665 866 -520 6618 60 25 43 chr21 17243188 17244154 -17663416 + SVA Other Other 432 1379 -7 1260 114 0 6 chr21 17244419 17244586 -17662984 - FRAM SINE Alu -13 163 1 2631 46 0 0 chr21 17244779 17245082 -17662488 + AluY SINE Alu 1 303 -8 257 136 0 0 chr21 17245142 17245186 -17662384 - L1MB8 LINE L1 0 6178 6135 1457 190 3 31 chr21 17245388 17245677 -17661893 - MSTD LTR MaLR -4 392 112 517 152 30 0 chr21 17245771 17245870 -17661700 - MSTD LTR MaLR -294 102 1 2380 73 0 0 chr21 17245911 17246231 -17661339 + AluY SINE Alu 1 320 0 1773 148 45 0 chr21 17246259 17246596 -17660974 - L1MDa LINE L1 -4505 2035 1684 2257 122 0 3 chr21 17246596 17246900 -17660670 - AluSg SINE Alu -7 303 1 2391 103 0 3 chr21 17246900 17247202 -17660368 - AluSq SINE Alu -12 301 1 25 51 0 0 chr21 17247488 17247527 -17660043 + AT_rich Low_complexity Low_complexity 1 39 0 2286 104 6 16 chr21 17247619 17247935 -17659635 - AluSp SINE Alu 0 313 1 509 246 0 88 chr21 17248117 17248264 -17659306 + MIR SINE MIR 28 162 -46 21 0 0 0 chr21 17248316 17248337 -17659233 + AT_rich Low_complexity Low_complexity 1 21 0 475 150 100 0 chr21 17248339 17248419 -17659151 - AluSg SINE Alu -21 288 201 962 89 0 0 chr21 17248419 17248542 -17659028 - AluSg SINE Alu -187 123 1 557 296 95 35 chr21 17248573 17248700 -17658870 - L2 LINE L2 -9 3304 3186 2218 100 7 10 chr21 17248700 17249000 -17658570 + AluSx SINE Alu 3 301 -11 557 296 95 35 chr21 17249000 17249240 -17658330 - L2 LINE L2 -127 3186 2915 789 278 189 17 chr21 17249388 17249870 -17657700 - L2 LINE L2 -596 2718 2154 817 144 0 0 chr21 17250080 17250198 -17657372 + FLAM_C SINE Alu 1 118 -25 30 0 0 0 chr21 17250198 17250228 -17657342 + AT_rich Low_complexity Low_complexity 1 30 0 2481 74 0 3 chr21 17250890 17251202 -17656368 - AluSx SINE Alu -1 311 1 937 191 29 0 chr21 17251952 17252125 -17655445 + MER20 DNA MER1_type 42 219 0 1568 203 97 22 chr21 17252280 17252725 -17654845 - L1ME2 LINE L1 -30 6134 5656 274 330 50 0 chr21 17252725 17252825 -17654745 - L2 LINE L2 -12 3260 3156 2516 88 0 0 chr21 17252890 17253196 -17654374 + AluSp SINE Alu 1 306 -7 1975 127 29 29 chr21 17253200 17253507 -17654063 + AluJb SINE Alu 1 307 -5 1381 166 40 43 chr21 17253630 17253931 -17653639 + AluJo SINE Alu 1 300 -12 1700 141 39 18 chr21 17254351 17254660 -17652910 + AluSx SINE Alu 1 312 0 2262 84 10 3 chr21 17254971 17255268 -17652302 - AluSq SINE Alu -12 301 3 1585 82 5 14 chr21 17255380 17255599 -17651971 + AluSg SINE Alu 1 217 -93 2458 64 3 0 chr21 17257548 17257846 -17649724 + AluSg SINE Alu 1 299 -11 881 128 0 15 chr21 17257918 17258051 -17649519 - FLAM_C SINE Alu 0 133 3 21 0 0 0 chr21 17258786 17258807 -17648763 + AT_rich Low_complexity Low_complexity 1 21 0 1960 139 3 20 chr21 17259495 17259798 -17647772 - AluSx SINE Alu -14 298 1 2284 107 3 0 chr21 17259807 17260106 -17647464 - AluSx SINE Alu -12 300 1 975 268 43 68 chr21 17260109 17260503 -17647067 - L1ME4a LINE L1 -295 5826 5445 2623 56 0 0 chr21 17260503 17260805 -17646765 + AluY SINE Alu 1 302 -9 975 268 43 68 chr21 17260805 17260898 -17646672 - L1ME4a LINE L1 -676 5445 5351 316 245 75 0 chr21 17261243 17261349 -17646221 + MIR SINE MIR 119 232 -30 284 248 135 50 chr21 17261479 17261620 -17645950 + L2 LINE L2 3160 3312 -1 650 266 5 27 chr21 17262417 17262605 -17644965 - LTR16A LTR ERVL -215 235 52 2071 144 3 3 chr21 17262811 17263110 -17644460 - AluSx SINE Alu -13 299 1 3665 186 29 47 chr21 17263131 17263601 -17643969 - L1MD2 LINE L1 -2 6357 5911 1908 166 0 0 chr21 17263601 17263903 -17643667 - AluJb SINE Alu -10 302 1 3665 186 29 47 chr21 17263903 17264376 -17643194 - L1MD2 LINE L1 -448 5911 5431 2314 88 0 28 chr21 17265669 17265987 -17641583 - AluSq SINE Alu -3 310 2 2325 69 7 36 chr21 17266751 17267054 -17640516 - AluSg SINE Alu -16 294 1 1565 88 4 22 chr21 17267093 17267321 -17640249 + AluY SINE Alu 88 311 0 2162 128 3 0 chr21 17268951 17269257 -17638313 - AluJb SINE Alu -5 307 1 214 273 45 57 chr21 17269345 17269433 -17638137 - L2 LINE L2 -97 3216 3130 36 23 0 0 chr21 17270577 17270620 -17636950 + AT_rich Low_complexity Low_complexity 1 43 0 28 29 0 0 chr21 17271927 17271962 -17635608 + AT_rich Low_complexity Low_complexity 1 35 0 763 221 74 0 chr21 17272420 17272610 -17634960 + MER3 DNA MER1_type 6 209 0 21 57 0 0 chr21 17274161 17274196 -17633374 + AT_rich Low_complexity Low_complexity 1 35 0 2099 113 0 27 chr21 17275305 17275605 -17631965 - AluSx SINE Alu -20 292 1 2178 122 3 3 chr21 17275816 17276118 -17631452 - AluSx SINE Alu -10 302 1 249 33 0 0 chr21 17276120 17276150 -17631420 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 471 220 153 0 chr21 17276152 17276354 -17631216 - L1MC/D LINE L1 -1997 5811 5557 483 254 17 22 chr21 17276367 17276548 -17631022 - L1MC/D LINE L1 -2312 5496 5317 2000 110 6 60 chr21 17277178 17277495 -17630075 - AluSx SINE Alu -12 300 1 1505 184 16 56 chr21 17277515 17277819 -17629751 - AluJo SINE Alu -20 292 1 209 246 62 0 chr21 17277950 17278015 -17629555 + CT-rich Low_complexity Low_complexity 3 71 0 296 186 0 14 chr21 17279283 17279353 -17628217 + (TATG)n Simple_repeat Simple_repeat 2 70 0 432 0 0 0 chr21 17279420 17279468 -17628102 + (TG)n Simple_repeat Simple_repeat 2 49 0 2000 127 7 0 chr21 17279468 17279751 -17627819 - AluSx SINE Alu -27 285 1 550 204 78 6 chr21 17279870 17280037 -17627533 + MER58 DNA MER1_type 2242 2420 0 1848 163 10 7 chr21 17280935 17281230 -17626340 - AluJb SINE Alu -16 296 1 878 317 65 78 chr21 17281984 17282887 -17624683 - L2 LINE L2 -344 2970 2079 2226 88 10 7 chr21 17282918 17283213 -17624357 + AluSx SINE Alu 1 296 -16 482 291 0 16 chr21 17283472 17283599 -17623971 - MER5A DNA MER1_type -64 125 1 2040 111 34 71 chr21 17283620 17283998 -17623572 - THE1B LTR MaLR 0 364 1 1500 145 13 0 chr21 17284136 17284363 -17623207 + AluJb SINE Alu 61 290 -22 2637 58 0 0 chr21 17285970 17286281 -17621289 - AluY SINE Alu 0 311 1 1408 201 36 4 chr21 17286767 17287041 -17620529 + AluJo SINE Alu 6 288 -24 26 0 0 0 chr21 17287126 17287152 -17620418 + AT_rich Low_complexity Low_complexity 1 26 0 820 177 30 61 chr21 17287369 17287567 -17620003 - MER58A DNA MER1_type 0 224 33 225 333 21 31 chr21 17287595 17287691 -17619879 - MIR SINE MIR -156 106 12 2259 92 0 13 chr21 17288536 17288841 -17618729 - AluSg SINE Alu -9 301 1 971 176 0 12 chr21 17288862 17289027 -17618543 - FRAM SINE Alu -3 163 1 370 183 70 0 chr21 17289028 17289099 -17618471 - MER5A DNA MER1_type -113 76 1 193 302 188 0 chr21 17289627 17289723 -17617847 - L3 LINE CR1 -92 1485 1372 870 176 84 2 chr21 17290736 17290987 -17616583 + MER2 DNA MER2_type 2 321 -23 354 313 64 32 chr21 17293004 17293169 -17614401 + L2 LINE L2 2902 3068 -204 2102 99 31 0 chr21 17293715 17294007 -17613563 - AluSg SINE Alu -9 301 1 669 114 20 2 chr21 17294132 17294388 -17613182 + AluSx SINE Alu 1 309 0 2294 97 3 7 chr21 17295750 17296050 -17611520 + AluSg SINE Alu 2 300 -10 2281 76 7 3 chr21 17296206 17296497 -17611073 + AluSp SINE Alu 1 292 -21 364 289 66 46 chr21 17297143 17297295 -17610275 + MIR SINE MIR 1 155 -107 21 26 0 26 chr21 17298389 17298410 -17609160 + AT_rich Low_complexity Low_complexity 1 22 -16 2334 92 0 16 chr21 17298410 17298713 -17608857 - AluSx SINE Alu -14 298 1 21 26 0 26 chr21 17298713 17298730 -17608840 + AT_rich Low_complexity Low_complexity 22 38 0 383 250 144 25 chr21 17300407 17300567 -17607003 + MIR SINE MIR 32 210 -52 21 0 0 0 chr21 17300670 17300691 -17606879 + AT_rich Low_complexity Low_complexity 1 21 0 800 194 0 48 chr21 17301065 17301271 -17606299 - MER3 DNA MER1_type -2 207 12 1404 133 48 68 chr21 17301340 17301634 -17605936 - AluSx SINE Alu -24 288 1 543 291 89 64 chr21 17301677 17302035 -17605535 + L2 LINE L2 2611 2977 -337 211 292 67 34 chr21 17302219 17302308 -17605262 + L2 LINE L2 3167 3258 -55 507 288 22 14 chr21 17304247 17304410 -17603160 - MIR SINE MIR -39 169 3 310 184 20 20 chr21 17304465 17304563 -17603007 + (TA)n Simple_repeat Simple_repeat 2 99 0 1041 128 13 6 chr21 17304569 17304725 -17602845 + AluJb SINE Alu 141 297 -15 1599 107 82 7 chr21 17304834 17305104 -17602466 + MSTA LTR MaLR 139 428 0 694 161 103 11 chr21 17305154 17305328 -17602242 + Charlie1 DNA MER1_type 2572 2761 0 22 35 0 0 chr21 17305496 17305525 -17602045 + AT_rich Low_complexity Low_complexity 1 29 0 281 236 0 0 chr21 17305638 17305693 -17601877 + L2 LINE L2 2918 2972 -341 1605 190 27 6 chr21 17305999 17306336 -17601234 + MLT1A1 LTR MaLR 1 344 -21 2267 84 9 0 chr21 17306336 17306659 -17600911 - pTR5 LTR ERV1 -2046 392 67 246 255 61 0 chr21 17306660 17306758 -17600812 - LTR30 LTR ERV1 -80 642 539 2293 140 57 29 chr21 17306758 17307633 -17599937 - pTR5 LTR ERV1 -418 2020 741 21 0 0 0 chr21 17308275 17308296 -17599274 + AT_rich Low_complexity Low_complexity 1 21 0 1110 206 7 3 chr21 17308794 17309236 -17598334 - REP3 LTR ERV 0 562 89 299 136 102 0 chr21 17309288 17309347 -17598223 + REP3 LTR ERV 44 108 -454 28 29 0 0 chr21 17310927 17310962 -17596608 + AT_rich Low_complexity Low_complexity 1 35 0 2358 70 0 13 chr21 17311216 17311514 -17596056 + AluY SINE Alu 1 294 -17 455 195 0 0 chr21 17312201 17312283 -17595287 - MLT1H LTR MaLR 0 549 468 267 103 0 0 chr21 17313781 17313820 -17593750 + (TG)n Simple_repeat Simple_repeat 2 40 0 364 148 55 8 chr21 17313903 17314031 -17593539 + (TA)n Simple_repeat Simple_repeat 2 135 0 1053 54 0 0 chr21 17315391 17315520 -17592050 + AluY SINE Alu 178 306 -5 964 316 82 7 chr21 17316879 17317419 -17590151 + L2 LINE L2 2730 3308 -5 309 314 43 29 chr21 17317419 17317528 -17590042 - MIR SINE MIR -117 145 32 2488 77 0 0 chr21 17317528 17317839 -17589731 - AluY SINE Alu 0 311 1 309 314 43 29 chr21 17317839 17317869 -17589701 - MIR SINE MIR -230 32 4 2460 91 3 0 chr21 17318836 17319145 -17588425 + AluSg SINE Alu 1 310 0 689 216 0 6 chr21 17319742 17319923 -17587647 + GA-rich Low_complexity Low_complexity 1 180 0 2525 68 3 0 chr21 17320315 17320624 -17586946 - AluY SINE Alu 0 311 2 1356 193 52 0 chr21 17320797 17321102 -17586468 - MER33 DNA MER1_type -2 322 2 1529 219 0 25 chr21 17321410 17321730 -17585840 - AluJo SINE Alu 0 312 1 696 297 12 35 chr21 17321750 17322009 -17585561 - MIR SINE MIR -1 261 9 185 318 91 11 chr21 17322120 17322208 -17585362 - MIR SINE MIR -122 140 46 2292 107 0 0 chr21 17322850 17323150 -17584420 - AluSx SINE Alu -12 300 1 219 36 0 0 chr21 17323411 17323439 -17584131 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 2267 54 0 34 chr21 17323442 17323737 -17583833 - AluY SINE Alu -26 285 1 531 311 18 6 chr21 17323745 17323909 -17583661 + MIR SINE MIR 47 212 -50 1225 165 42 9 chr21 17324037 17324249 -17583321 + MER20 DNA MER1_type 1 219 0 981 238 0 5 chr21 17324257 17324446 -17583124 - MER5A DNA MER1_type 0 189 2 664 216 84 24 chr21 17324556 17324723 -17582847 + MER76 LTR ERV 1 177 -511 1868 132 4 7 chr21 17324736 17325009 -17582561 + AluJb SINE Alu 16 287 -25 330 152 0 0 chr21 17325013 17325072 -17582498 + G-rich Low_complexity Low_complexity 5 63 0 496 297 73 22 chr21 17325149 17325510 -17582060 + MER76 LTR ERV 199 648 -40 509 196 0 20 chr21 17325672 17325774 -17581796 - MER5A DNA MER1_type -81 108 9 533 255 27 38 chr21 17326181 17326365 -17581205 - L2 LINE L2 0 3313 3132 31 0 0 0 chr21 17327394 17327425 -17580145 + AT_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr21 17327963 17327996 -17579574 + AT_rich Low_complexity Low_complexity 1 33 0 424 282 58 43 chr21 17328465 17328653 -17578917 - MIR SINE MIR -9 253 63 1637 173 3 44 chr21 17329032 17329350 -17578220 - AluJo SINE Alu 0 306 1 2700 36 0 0 chr21 17329747 17330054 -17577516 + AluY SINE Alu 1 307 -4 389 241 82 44 chr21 17330306 17330464 -17577106 - MIR SINE MIR -97 165 2 530 268 72 7 chr21 17330464 17330548 -17577022 + MIR SINE MIR 84 177 -85 351 159 16 0 chr21 17330582 17330645 -17576925 - MLT1F LTR MaLR 0 567 504 2561 58 0 10 chr21 17330645 17330956 -17576614 - AluY SINE Alu -3 308 1 233 118 0 0 chr21 17331011 17331045 -17576525 - Alu SINE Alu -99 34 1 429 253 0 0 chr21 17331047 17331138 -17576432 - MLT1F LTR MaLR -60 482 392 267 216 167 39 chr21 17331292 17331351 -17576219 + L3 LINE CR1 563 613 -964 2308 83 3 0 chr21 17331351 17331652 -17575918 - AluY SINE Alu -9 302 1 267 216 167 39 chr21 17331652 17331694 -17575876 + L3 LINE CR1 613 677 -900 298 246 91 0 chr21 17331694 17331804 -17575766 - Charlie7 DNA MER1_type 0 2612 2493 465 173 83 30 chr21 17331784 17331917 -17575653 - Charlie7 DNA MER1_type -2448 164 25 345 294 71 91 chr21 17332029 17332226 -17575344 - MER91A DNA MER1_type 0 196 4 1050 91 0 0 chr21 17332425 17332557 -17575013 - FLAM_C SINE Alu 0 133 2 1707 207 99 19 chr21 17332670 17333032 -17574538 + MLT1F LTR MaLR 105 495 -47 1080 222 0 23 chr21 17333032 17333248 -17574322 + MER58A DNA MER1_type 2 212 -12 1805 130 3 47 chr21 17333251 17333390 -17574180 + AluJb SINE Alu 1 122 -190 2211 107 0 13 chr21 17333390 17333690 -17573880 + AluSx SINE Alu 1 296 -16 1805 130 3 47 chr21 17333690 17333849 -17573721 + AluJb SINE Alu 122 286 -26 214 128 0 26 chr21 17334124 17334163 -17573407 + MER5A DNA MER1_type 9 46 -143 1757 105 21 0 chr21 17336132 17336371 -17571199 - AluSx SINE Alu -16 296 53 2309 105 0 0 chr21 17336977 17337283 -17570287 + AluSg1 SINE Alu 1 306 -3 257 143 48 0 chr21 17337489 17337531 -17570039 + MLT1L LTR MaLR 237 280 -335 390 224 140 0 chr21 17337651 17337758 -17569812 + MLT1L LTR MaLR 463 584 -31 473 323 37 21 chr21 17337911 17338023 -17569547 - L1ME LINE L1 -407 5714 5596 1704 224 21 50 chr21 17338023 17338406 -17569164 + MLT1A2 LTR MaLR 1 372 -2 473 323 37 21 chr21 17338406 17338482 -17569088 - L1ME LINE L1 -525 5596 5523 375 234 53 11 chr21 17339760 17339854 -17567716 - L1MC/D LINE L1 -2150 5658 5561 1482 211 131 74 chr21 17340251 17340328 -17567242 - HAL1 LINE L1 -1253 1254 1183 1955 167 0 3 chr21 17340328 17340639 -17566931 - AluSx SINE Alu -2 310 1 1482 211 131 74 chr21 17340639 17340916 -17566654 - HAL1 LINE L1 -1324 1183 923 2220 111 0 0 chr21 17340916 17341241 -17566329 + AluY SINE Alu 1 311 0 1482 211 131 74 chr21 17341241 17341564 -17566006 - HAL1 LINE L1 -1584 923 537 958 283 66 25 chr21 17341644 17341956 -17565614 - HAL1 LINE L1 -2108 399 67 2162 95 0 11 chr21 17341956 17342276 -17565294 + AluSc SINE Alu 1 317 0 958 283 66 25 chr21 17342276 17342326 -17565244 - HAL1 LINE L1 -2440 67 21 215 243 14 0 chr21 17342441 17342511 -17565059 + T-rich Low_complexity Low_complexity 2 72 0 1881 94 98 4 chr21 17342760 17343036 -17564534 - AluSg SINE Alu -8 302 1 557 107 12 48 chr21 17343420 17343504 -17564066 - AluSg/x SINE Alu -40 269 189 1898 95 8 26 chr21 17343508 17343772 -17563798 - AluSx SINE Alu -53 259 1 30 27 0 0 chr21 17343982 17344019 -17563551 + AT_rich Low_complexity Low_complexity 1 37 0 1980 143 0 0 chr21 17344023 17344310 -17563260 - AluSx SINE Alu -25 287 1 2028 157 0 0 chr21 17344326 17344632 -17562938 - AluJb SINE Alu -6 306 1 550 285 5 6 chr21 17345432 17345591 -17561979 + MIR SINE MIR 13 170 -58 531 153 226 0 chr21 17345629 17345753 -17561817 - MER45A DNA AcHobo -26 152 1 202 267 23 58 chr21 17345860 17345946 -17561624 - MIR SINE MIR -126 136 54 26 30 0 0 chr21 17346275 17346308 -17561262 + AT_rich Low_complexity Low_complexity 1 33 0 253 242 45 0 chr21 17346316 17346382 -17561188 + MIR3 SINE MIR 123 191 -17 24 32 0 0 chr21 17346712 17346743 -17560827 + AT_rich Low_complexity Low_complexity 1 31 0 192 40 0 0 chr21 17347067 17347092 -17560478 + (TTTAA)n Simple_repeat Simple_repeat 4 28 0 30 0 0 0 chr21 17348007 17348037 -17559533 + AT_rich Low_complexity Low_complexity 1 30 0 1915 110 4 0 chr21 17348037 17348292 -17559278 - AluSx SINE Alu -22 290 35 220 184 0 20 chr21 17348366 17348415 -17559155 - L2 LINE L2 -4 3268 3221 1485 259 73 47 chr21 17348774 17349604 -17557966 - HAL1 LINE L1 0 2507 1617 2329 106 0 7 chr21 17349604 17349906 -17557664 - AluSq SINE Alu -13 300 1 1485 259 73 47 chr21 17349906 17350124 -17557446 - HAL1 LINE L1 -890 1617 1406 447 306 12 17 chr21 17350320 17350493 -17557077 + MIR SINE MIR 64 235 -27 514 90 18 45 chr21 17350598 17350709 -17556861 + (TTTC)n Simple_repeat Simple_repeat 1 108 0 1835 165 0 0 chr21 17350725 17350998 -17556572 + AluJb SINE Alu 1 273 -39 575 342 49 4 chr21 17351181 17351444 -17556126 + MLT1K LTR MaLR 301 575 -13 2432 217 124 57 chr21 17352052 17352826 -17554744 - LTR1B LTR ERV1 0 826 1 22 70 0 0 chr21 17352830 17352873 -17554697 + AT_rich Low_complexity Low_complexity 1 43 0 2275 120 0 3 chr21 17352997 17353305 -17554265 - AluSq SINE Alu -6 307 1 511 246 24 16 chr21 17353333 17353459 -17554111 + L1MC5 LINE L1 7278 7404 -557 21 0 0 0 chr21 17353581 17353602 -17553968 + AT_rich Low_complexity Low_complexity 1 21 0 2323 101 0 3 chr21 17354014 17354322 -17553248 + AluSg SINE Alu 1 307 -3 846 246 39 0 chr21 17354542 17354749 -17552821 + MER58 DNA MER1_type 1 215 -126 920 198 42 0 chr21 17354748 17354915 -17552655 + MER58A DNA MER1_type 47 220 -4 283 357 10 0 chr21 17354916 17355014 -17552556 - MIR SINE MIR -73 135 37 617 271 43 14 chr21 17355074 17355281 -17552289 - MIR SINE MIR -13 249 37 497 226 21 0 chr21 17356157 17356250 -17551320 + MER58A DNA MER1_type 2 96 -11 644 166 57 129 chr21 17356250 17356385 -17551185 + MER58A DNA MER1_type 46 164 -2256 2360 108 0 6 chr21 17356385 17356700 -17550870 - AluSq SINE Alu 0 313 1 644 166 57 129 chr21 17356700 17356757 -17550813 + MER58A DNA MER1_type 164 224 0 23 0 0 0 chr21 17357228 17357251 -17550319 + AT_rich Low_complexity Low_complexity 1 23 0 2550 54 0 0 chr21 17358247 17358543 -17549027 - AluY SINE Alu -15 296 1 272 328 9 50 chr21 17358577 17358763 -17548807 + MIR SINE MIR 16 192 -62 5607 153 71 9 chr21 17358997 17360073 -17547497 - L1MC2 LINE L1 -27 6317 5174 203 0 0 36 chr21 17360633 17360661 -17546909 + (GGGAA)n Simple_repeat Simple_repeat 3 29 0 222 214 0 0 chr21 17361732 17361774 -17545796 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 2086 145 0 0 chr21 17362447 17362750 -17544820 - AluSx SINE Alu -8 304 2 800 115 0 39 chr21 17364177 17364307 -17543263 + FLAM_C SINE Alu 1 125 -8 2548 67 0 6 chr21 17364709 17365022 -17542548 + AluY SINE Alu 1 311 0 23 0 0 0 chr21 17365756 17365779 -17541791 + AT_rich Low_complexity Low_complexity 1 23 0 286 245 29 49 chr21 17365913 17366015 -17541555 - MER5A DNA MER1_type 0 189 90 2171 114 13 0 chr21 17366454 17366762 -17540808 - AluSx SINE Alu 0 312 1 374 337 147 11 chr21 17366863 17367053 -17540517 + MIR SINE MIR 29 244 -18 1544 167 69 7 chr21 17368641 17368916 -17538654 + AluJo SINE Alu 1 292 -20 751 80 0 0 chr21 17369226 17369326 -17538244 - HY3 scRNA scRNA -1 100 1 2227 95 3 3 chr21 17369531 17369826 -17537744 - AluSx SINE Alu -17 295 1 225 0 0 0 chr21 17369837 17369862 -17537708 + (T)n Simple_repeat Simple_repeat 1 25 0 238 355 24 48 chr21 17370381 17370505 -17537065 - MIR SINE MIR -60 148 28 1699 191 7 0 chr21 17370723 17371017 -17536553 - AluJo SINE Alu -16 296 1 2226 108 7 0 chr21 17371175 17371482 -17536088 + AluY SINE Alu 1 309 -2 30 27 0 0 chr21 17371895 17371932 -17535638 + AT_rich Low_complexity Low_complexity 1 37 0 1877 164 0 7 chr21 17372014 17372306 -17535264 - AluJb SINE Alu -20 292 3 433 340 65 0 chr21 17372648 17372848 -17534722 - MIR SINE MIR -15 247 35 817 204 42 6 chr21 17373046 17373213 -17534357 - MER45A DNA AcHobo -1 177 5 2385 89 0 0 chr21 17373361 17373664 -17533906 - AluSp SINE Alu -10 303 1 2067 105 0 54 chr21 17374092 17374406 -17533164 - AluSx SINE Alu -15 297 1 235 303 83 23 chr21 17374526 17374658 -17532912 + MIR3 SINE MIR 57 196 -12 21 0 0 0 chr21 17376002 17376023 -17531547 + AT_rich Low_complexity Low_complexity 1 21 0 451 144 43 32 chr21 17377106 17377460 -17530110 + (TATATG)n Simple_repeat Simple_repeat 1 358 0 516 123 32 52 chr21 17377474 17377759 -17529811 + (TATATG)n Simple_repeat Simple_repeat 1 279 0 489 147 51 6 chr21 17377817 17377974 -17529596 + (TATATG)n Simple_repeat Simple_repeat 5 168 0 349 155 35 49 chr21 17377988 17378248 -17529322 + (TATATG)n Simple_repeat Simple_repeat 1 256 0 2335 106 0 0 chr21 17380708 17381011 -17526559 - AluSx SINE Alu -9 303 1 1969 91 57 57 chr21 17381135 17381433 -17526137 + AluSg SINE Alu 1 298 -12 259 103 0 0 chr21 17381433 17381472 -17526098 - MADE1 DNA Mariner -41 39 1 272 222 99 12 chr21 17382639 17382720 -17524850 - MIR SINE MIR -58 204 117 2026 164 0 3 chr21 17383385 17383690 -17523880 - AluJb SINE Alu -8 304 1 1177 122 0 0 chr21 17387053 17387234 -17520336 - L1MB2 LINE L1 0 6171 5991 1827 128 0 0 chr21 17388859 17389110 -17518460 - AluSx SINE Alu -9 303 53 2305 82 3 7 chr21 17390970 17391261 -17516309 + AluSx SINE Alu 1 290 -22 674 152 0 0 chr21 17391264 17391369 -17516201 - AluJo/FLAM SINE Alu -185 127 23 219 244 0 0 chr21 17391751 17391796 -17515774 + MIR SINE MIR 1 45 -217 2387 90 0 3 chr21 17392341 17392641 -17514929 + AluSq SINE Alu 1 299 -14 2135 112 10 19 chr21 17392765 17393078 -17514492 + AluSx SINE Alu 1 310 -2 1698 169 17 24 chr21 17393627 17393917 -17513653 - AluJo SINE Alu -2 310 23 720 147 0 0 chr21 17393947 17394056 -17513514 + AluSg/x SINE Alu 187 295 -15 21 36 0 0 chr21 17394996 17395024 -17512546 + AT_rich Low_complexity Low_complexity 1 28 0 24 22 0 43 chr21 17395254 17395279 -17512291 + AT_rich Low_complexity Low_complexity 1 25 -19 1496 91 10 0 chr21 17395279 17395488 -17512082 - L1PB1 LINE L1 0 6151 5941 24 22 0 43 chr21 17395488 17395508 -17512062 + AT_rich Low_complexity Low_complexity 25 44 0 180 0 0 0 chr21 17395510 17395530 -17512040 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1820 122 48 0 chr21 17395532 17395802 -17511768 - AluSx SINE Alu -29 283 1 3464 123 19 24 chr21 17395809 17396395 -17511175 - L1MA6 LINE L1 -1 6299 5717 3951 162 34 10 chr21 17396395 17397212 -17510358 - L1MB7 LINE L1 -66 6118 5279 2454 79 3 0 chr21 17397635 17397938 -17509632 - AluY SINE Alu -6 305 2 934 32 95 8 chr21 17398620 17398746 -17508824 - MER85 DNA T2_type -2 137 1 713 206 55 60 chr21 17398939 17399157 -17508413 + MER20 DNA MER1_type 3 219 0 2239 115 3 0 chr21 17400573 17400877 -17506693 - AluSx SINE Alu -4 308 4 26 0 0 0 chr21 17400881 17400907 -17506663 + AT_rich Low_complexity Low_complexity 1 26 0 294 214 14 0 chr21 17401322 17401392 -17506178 + Charlie7 DNA MER1_type 27 97 -2515 285 228 24 102 chr21 17401420 17401477 -17506093 - L1MC4 LINE L1 -5 8037 7994 2199 99 31 0 chr21 17401477 17401771 -17505799 + AluSx SINE Alu 3 305 -7 285 228 24 102 chr21 17401771 17401840 -17505730 - L1MC4 LINE L1 -48 7994 7921 233 217 0 29 chr21 17401884 17401953 -17505617 + (TATATG)n Simple_repeat Simple_repeat 6 72 0 629 213 104 15 chr21 17401957 17402436 -17505134 - L1MC4 LINE L1 -110 7885 7333 412 172 65 0 chr21 17402439 17402532 -17505038 - L1MC4 LINE L1 -725 7317 7219 275 228 66 78 chr21 17402534 17402701 -17504869 + Charlie7 DNA MER1_type 2444 2608 -4 1789 180 7 0 chr21 17403646 17403941 -17503629 - AluJo SINE Alu -15 297 1 793 169 12 0 chr21 17405950 17406110 -17501460 + CT-rich Low_complexity Low_complexity 2 163 0 2164 129 7 0 chr21 17406110 17406420 -17501150 - AluSx SINE Alu 0 312 1 727 260 48 0 chr21 17406571 17406779 -17500791 + MER20 DNA MER1_type 2 219 0 374 375 0 35 chr21 17408510 17408654 -17498916 - L2 LINE L2 0 3272 3134 1142 214 62 5 chr21 17408671 17409147 -17498423 + MLT1F1 LTR MaLR 1 559 -8 2195 81 46 0 chr21 17409217 17409501 -17498069 + AluSq SINE Alu 2 298 -15 251 316 56 64 chr21 17409519 17409753 -17497817 - L2 LINE L2 -212 3060 2829 2044 109 7 36 chr21 17409884 17410187 -17497383 + AluSx SINE Alu 1 294 -18 732 274 14 5 chr21 17410366 17410581 -17496989 - U3 snRNA snRNA 0 217 1 459 0 0 0 chr21 17410852 17410903 -17496667 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 1440 162 58 18 chr21 17410903 17411175 -17496395 - AluJo SINE Alu -29 283 1 233 29 29 0 chr21 17411175 17411209 -17496361 + (TTA)n Simple_repeat Simple_repeat 1 35 0 2119 102 3 3 chr21 17411219 17411502 -17496068 - AluSp SINE Alu -30 283 1 589 276 11 16 chr21 17413242 17413427 -17494143 - LTR33 LTR ERVL -337 184 1 2213 104 0 16 chr21 17413492 17413801 -17493769 - AluSx SINE Alu -8 304 1 2172 159 41 25 chr21 17413922 17414362 -17493208 + MSTB2 LTR MaLR 11 457 0 582 145 138 25 chr21 17414365 17414524 -17493046 + MER53 DNA DNA 1 177 -12 289 286 19 9 chr21 17414683 17414788 -17492782 + MER103 DNA DNA 2 107 -59 556 252 76 38 chr21 17415411 17415621 -17491949 - MLT1J LTR MaLR -3 508 291 1537 221 85 37 chr21 17415734 17416169 -17491401 + MLT2B1 LTR ERVL 5 468 -52 396 0 0 0 chr21 17416169 17416213 -17491357 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1537 221 85 37 chr21 17416213 17416269 -17491301 + MLT2B1 LTR ERVL 468 520 0 216 0 0 0 chr21 17416639 17416663 -17490907 + (TG)n Simple_repeat Simple_repeat 1 24 0 739 250 17 6 chr21 17417199 17417375 -17490195 - MER45A DNA AcHobo 0 178 1 324 89 0 0 chr21 17417922 17417967 -17489603 - MLT2D LTR ERVL -7 513 469 1036 222 31 86 chr21 17418034 17418394 -17489176 - MLT2D LTR ERVL -66 348 9 2226 113 3 3 chr21 17418662 17418972 -17488598 - AluSq SINE Alu -2 311 2 2227 111 0 0 chr21 17419816 17420122 -17487448 + AluSg SINE Alu 5 310 0 235 347 53 0 chr21 17420138 17420213 -17487357 + L2 LINE L2 3133 3211 -61 800 166 80 0 chr21 17420486 17420661 -17486909 + MER53 DNA DNA 1 189 0 2505 75 3 0 chr21 17421972 17422278 -17485292 - AluSp SINE Alu -6 307 1 37 39 0 0 chr21 17422340 17422391 -17485179 + AT_rich Low_complexity Low_complexity 1 51 0 1019 181 66 16 chr21 17423361 17423604 -17483966 + MER50 LTR ERV1 455 709 -25 1687 129 7 79 chr21 17423657 17423988 -17483582 - AluSx SINE Alu 0 309 1 496 211 119 11 chr21 17424224 17424409 -17483161 - LTR37A LTR ERV1 -2 424 220 588 211 64 39 chr21 17424700 17424904 -17482666 - MER34B LTR ERV1 0 565 357 350 186 40 141 chr21 17424905 17425104 -17482466 - LTR23-int LTR ERV1 -3952 1171 993 195 162 0 0 chr21 17425442 17425479 -17482091 + (TAA)n Simple_repeat Simple_repeat 3 39 0 181 286 0 0 chr21 17425498 17425540 -17482030 - L2 LINE L2 -21 3292 3251 25 0 0 0 chr21 17426661 17426686 -17480884 + AT_rich Low_complexity Low_complexity 1 25 0 3030 131 47 33 chr21 17427083 17427800 -17479770 + LTR1B LTR ERV1 1 826 0 3932 202 49 43 chr21 17427957 17428309 -17479261 - L1M4 LINE L1 -716 5960 5611 1862 157 29 64 chr21 17428309 17428351 -17479219 - THE1B LTR MaLR 0 364 322 2285 118 0 34 chr21 17428351 17428674 -17478896 + AluSx SINE Alu 1 312 0 1862 157 29 64 chr21 17428674 17429008 -17478562 - THE1B LTR MaLR -42 322 1 4222 89 3 36 chr21 17429011 17429642 -17477928 + MER4B LTR ERV1 1 610 0 3932 202 49 43 chr21 17429642 17429706 -17477864 - L1M4 LINE L1 -1066 5610 5548 2343 105 0 0 chr21 17429706 17430001 -17477569 - AluSx SINE Alu -17 295 1 3932 202 49 43 chr21 17430001 17430876 -17476694 - L1M4 LINE L1 -1128 5548 4671 780 194 0 0 chr21 17430873 17431017 -17476553 - L1M4 LINE L1 -5616 926 783 2892 229 54 6 chr21 17431019 17431909 -17475661 - L1M4 LINE L1 -1975 4669 3737 5476 215 41 55 chr21 17431883 17432674 -17474896 - L1M4 LINE L1 -4657 1989 1188 1209 158 0 23 chr21 17432674 17432889 -17474681 + L1PA16 LINE L1 5941 6150 -16 5476 215 41 55 chr21 17432889 17434102 -17473468 - L1M4 LINE L1 -5458 1188 16 248 300 29 0 chr21 17434688 17434758 -17472812 + MIR3 SINE MIR 109 180 -28 859 187 105 0 chr21 17434761 17434932 -17472638 + MER5A DNA MER1_type 1 189 0 2106 130 55 6 chr21 17434971 17435318 -17472252 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr21 17435434 17435457 -17472113 + AT_rich Low_complexity Low_complexity 1 23 0 2556 58 0 3 chr21 17435464 17435776 -17471794 + AluY SINE Alu 1 311 0 371 236 64 0 chr21 17436583 17436693 -17470877 - MER103 DNA DNA -48 118 2 402 279 82 16 chr21 17437006 17437128 -17470442 + MER5A DNA MER1_type 9 138 -51 1285 202 89 52 chr21 17437447 17437829 -17469741 - MSTD LTR MaLR 0 396 1 2150 139 3 0 chr21 17439161 17439462 -17468108 + AluSx SINE Alu 1 302 -10 227 286 0 0 chr21 17439462 17439518 -17468052 + MER3 DNA MER1_type 19 74 -135 35 41 0 0 chr21 17439525 17439574 -17467996 + AT_rich Low_complexity Low_complexity 1 49 0 4417 182 47 14 chr21 17440472 17441701 -17465869 + L1MB3 LINE L1 4918 6183 0 752 160 52 39 chr21 17442608 17442925 -17464645 + MLT1A1 LTR MaLR 2 374 0 918 174 3 5 chr21 17443552 17444343 -17463227 + (CA)n Simple_repeat Simple_repeat 1 789 0 834 198 13 67 chr21 17445166 17445404 -17462166 - L1MA10 LINE L1 -18 6316 6092 307 244 93 0 chr21 17445599 17445685 -17461885 + L2 LINE L2 3212 3305 -8 1088 192 9 0 chr21 17445753 17445966 -17461604 - MER58A DNA MER1_type 0 224 10 200 299 60 0 chr21 17447330 17447397 -17460173 + MIR SINE MIR 122 192 -70 2184 126 0 3 chr21 17447407 17447709 -17459861 + AluSx SINE Alu 1 301 -11 219 392 20 0 chr21 17448340 17448442 -17459128 + L2 LINE L2 2604 2707 -607 858 191 38 0 chr21 17449928 17450085 -17457485 + FRAM SINE Alu 1 163 -13 784 255 130 0 chr21 17450221 17450429 -17457141 - MIR SINE MIR -21 241 7 2006 153 0 0 chr21 17450834 17451135 -17456435 - AluSx SINE Alu -11 301 1 1994 171 11 21 chr21 17453820 17454199 -17453371 + THE1C LTR MaLR 1 375 0 746 187 105 5 chr21 17454683 17454892 -17452678 - MER33 DNA MER1_type -93 231 2 540 257 97 35 chr21 17454909 17455248 -17452322 - HAL1b LINE L1 -900 448 89 969 257 29 13 chr21 17455648 17456025 -17451545 - L1M4 LINE L1 -2481 3665 3283 328 398 56 4 chr21 17456249 17456518 -17451052 + L2 LINE L2 2431 2713 -601 2025 155 19 8 chr21 17456564 17456925 -17450645 - MLT1A1 LTR MaLR 0 365 1 240 35 0 0 chr21 17456988 17457017 -17450553 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 194 188 0 0 chr21 17457348 17457380 -17450190 + MIR SINE MIR 222 253 -9 391 325 77 18 chr21 17457489 17457658 -17449912 - MIR SINE MIR -71 191 13 281 331 109 97 chr21 17458615 17459149 -17448421 + L3 LINE CR1 454 993 -584 399 296 130 39 chr21 17459256 17459447 -17448123 + L3 LINE CR1 1051 1282 -295 2932 9 0 0 chr21 17459447 17459765 -17447805 + AluYb8 SINE Alu 1 318 0 399 296 130 39 chr21 17459765 17459880 -17447690 + L3 LINE CR1 1282 1385 -192 1757 168 58 28 chr21 17459908 17460272 -17447298 - THE1C LTR MaLR 0 375 1 26 0 0 0 chr21 17460397 17460423 -17447147 + AT_rich Low_complexity Low_complexity 1 26 0 4498 111 31 20 chr21 17461328 17461493 -17446077 - LTR8 LTR ERV1 0 691 529 2305 92 3 0 chr21 17461493 17461786 -17445784 - AluSc SINE Alu -15 294 1 4498 111 31 20 chr21 17461786 17462304 -17445266 - LTR8 LTR ERV1 -162 529 1 434 329 20 7 chr21 17462337 17462489 -17445081 + MIR SINE MIR 1 154 -108 1731 142 73 50 chr21 17462708 17462994 -17444576 - MLT1B LTR MaLR 0 390 91 2818 112 19 7 chr21 17462994 17463423 -17444147 + MER57B LTR ERV1 1 434 0 1731 142 73 50 chr21 17463423 17463517 -17444053 - MLT1B LTR MaLR -299 91 1 1066 126 10 39 chr21 17463846 17464052 -17443518 + LTR24C LTR ERV1 1 200 -435 3372 188 34 31 chr21 17464042 17464839 -17442731 - LTR1B LTR ERV1 -27 799 1 2241 153 45 2 chr21 17464842 17465266 -17442304 + LTR24C LTR ERV1 194 635 0 270 277 20 81 chr21 17466758 17466906 -17440664 + MIR3 SINE MIR 38 176 -32 228 296 15 67 chr21 17468065 17468200 -17439370 - MLT1I LTR MaLR -28 381 254 847 198 0 0 chr21 17468242 17468414 -17439156 - L1MA3 LINE L1 -251 6054 5883 2154 129 0 0 chr21 17469819 17470128 -17437442 - AluSx SINE Alu -3 309 1 2133 112 40 69 chr21 17470609 17470984 -17436586 + THE1B LTR MaLR 1 364 0 2279 110 0 0 chr21 17471455 17471755 -17435815 + AluSq SINE Alu 1 300 -13 399 286 17 8 chr21 17472369 17472488 -17435082 - L2 LINE L2 -3 3310 3191 2117 136 0 0 chr21 17472570 17472864 -17434706 + AluSq SINE Alu 1 294 -19 2642 154 24 0 chr21 17473253 17473675 -17433895 - MSTB1 LTR MaLR 0 432 1 1629 132 0 0 chr21 17473722 17473950 -17433620 - AluSg/x SINE Alu -2 308 81 1094 138 8 107 chr21 17474106 17474359 -17433211 - L1M1 LINE L1 -568 5737 5510 1687 86 0 0 chr21 17474360 17474594 -17432976 + L1MA3 LINE L1 6062 6295 -10 23 0 0 0 chr21 17475919 17475942 -17431628 + AT_rich Low_complexity Low_complexity 1 23 0 1268 130 31 75 chr21 17476201 17476455 -17431115 - AluJo SINE Alu 0 312 70 3042 128 16 14 chr21 17476894 17477392 -17430178 - L1PB4 LINE L1 -2 6154 5656 207 82 41 61 chr21 17478041 17478090 -17429480 + T-rich Low_complexity Low_complexity 3 50 0 198 0 0 0 chr21 17478396 17478418 -17429152 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4643 133 21 3 chr21 17479133 17480070 -17427500 - L1PA16 LINE L1 -10 6156 5172 21 82 0 0 chr21 17480076 17480125 -17427445 + AT_rich Low_complexity Low_complexity 1 49 0 2172 228 46 41 chr21 17480401 17480990 -17426580 + MLT1E LTR MaLR 2 593 0 748 212 58 26 chr21 17481943 17482087 -17425483 - MIR SINE MIR -29 233 95 2300 113 14 8 chr21 17482087 17482440 -17425130 - THE1A LTR MaLR 0 355 1 11623 105 4 1 chr21 17482440 17484014 -17423556 - THE1A-int LTR MaLR 0 1580 1 2364 116 8 8 chr21 17484014 17484369 -17423201 - THE1A LTR MaLR 0 355 1 748 212 58 26 chr21 17484369 17484411 -17423159 - MIR SINE MIR -166 96 39 1544 244 28 5 chr21 17484435 17484858 -17422712 - L1ME1 LINE L1 -94 6072 5640 465 196 29 29 chr21 17484963 17485101 -17422469 - L1MDa LINE L1 -5354 1186 1049 2130 172 69 38 chr21 17485104 17485270 -17422300 - L1ME1 LINE L1 -115 6051 5892 2253 101 20 0 chr21 17485270 17485566 -17422004 + AluSg SINE Alu 1 302 -8 2130 172 69 38 chr21 17485566 17485933 -17421637 - L1ME1 LINE L1 -274 5892 5501 540 248 22 15 chr21 17487376 17487513 -17420057 + MLT1G LTR MaLR 25 162 -428 221 130 43 0 chr21 17487532 17487578 -17419992 + (TA)n Simple_repeat Simple_repeat 1 48 0 399 55 0 0 chr21 17487578 17487633 -17419937 + MLT2A2 LTR ERVL 399 453 0 370 340 53 0 chr21 17487692 17487842 -17419728 - MIR SINE MIR -15 247 90 185 172 47 78 chr21 17488048 17488112 -17419458 - MIR SINE MIR -41 221 160 292 333 58 78 chr21 17488167 17488277 -17419293 + MIR SINE MIR 3 114 -148 2091 117 4 0 chr21 17488277 17488558 -17419012 + AluSx SINE Alu 1 282 -30 292 333 58 78 chr21 17488558 17488705 -17418865 + MIR SINE MIR 114 255 -7 224 132 57 0 chr21 17489486 17489539 -17418031 + (TA)n Simple_repeat Simple_repeat 2 57 0 258 350 23 51 chr21 17489844 17490058 -17417512 + L2 LINE L2 2807 3014 -258 732 149 21 14 chr21 17490062 17490203 -17417367 - MSTC LTR MaLR -11 385 244 222 37 0 0 chr21 17490215 17490242 -17417328 + (GA)n Simple_repeat Simple_repeat 2 28 0 748 151 20 7 chr21 17490269 17490419 -17417151 - MSTC LTR MaLR -247 149 1 206 322 0 17 chr21 17490420 17490479 -17417091 + L2 LINE L2 3012 3069 -203 195 229 0 66 chr21 17490554 17490615 -17416955 + L2 LINE L2 3257 3313 0 608 281 134 4 chr21 17490641 17490872 -17416698 + MIR SINE MIR 2 262 0 345 159 0 0 chr21 17491411 17491474 -17416096 + GA-rich Low_complexity Low_complexity 2 64 0 13994 118 57 21 chr21 17492020 17494353 -17413217 - Tigger1 DNA MER2_type 0 2418 1 232 143 41 0 chr21 17495147 17495196 -17412374 + (TA)n Simple_repeat Simple_repeat 2 52 0 1958 118 39 0 chr21 17495369 17495649 -17411921 + AluSx SINE Alu 6 296 -16 2262 134 22 8 chr21 17495680 17496039 -17411531 + THE1B LTR MaLR 1 364 0 345 259 102 0 chr21 17496174 17496282 -17411288 - MER5B DNA MER1_type -59 119 1 2116 142 0 0 chr21 17496372 17496667 -17410903 + AluSx SINE Alu 1 295 -17 1215 164 138 15 chr21 17497358 17497626 -17409944 - AluSq SINE Alu -2 301 1 208 327 29 29 chr21 17498198 17498302 -17409268 + MER5A DNA MER1_type 9 112 -77 191 61 30 30 chr21 17498294 17498327 -17409243 - MER5A DNA MER1_type -114 75 43 2225 112 10 0 chr21 17498515 17498811 -17408759 + AluSg SINE Alu 1 299 -11 21 36 0 0 chr21 17499232 17499260 -17408310 + AT_rich Low_complexity Low_complexity 1 28 0 2439 99 51 5 chr21 17499260 17499653 -17407917 - L1MA1 LINE L1 0 6302 5892 527 204 0 0 chr21 17500008 17500106 -17407464 - MER81 DNA DNA -16 98 1 2146 136 33 14 chr21 17500112 17500480 -17407090 + THE1C LTR MaLR 1 375 0 453 208 69 31 chr21 17501075 17501138 -17406432 - MLT1H LTR MaLR 0 549 490 2409 85 0 3 chr21 17501138 17501445 -17406125 - AluSp SINE Alu -7 306 1 453 208 69 31 chr21 17501445 17501511 -17406059 - MLT1H LTR MaLR -59 490 415 549 231 86 74 chr21 17501578 17501634 -17405936 - MLT1H LTR MaLR -229 320 266 2001 146 7 13 chr21 17501634 17501936 -17405634 - AluSx SINE Alu -12 300 1 549 231 86 74 chr21 17501936 17502148 -17405422 - MLT1H LTR MaLR -283 266 49 737 241 46 4 chr21 17502282 17502523 -17405047 + Charlie7 DNA MER1_type 1635 1885 -727 1512 171 4 15 chr21 17502527 17502791 -17404779 + AluJo SINE Alu 22 282 -30 2083 147 0 3 chr21 17502883 17503182 -17404388 - AluSx SINE Alu -14 298 1 23 0 0 0 chr21 17503639 17503662 -17403908 + AT_rich Low_complexity Low_complexity 1 23 0 481 231 50 39 chr21 17503789 17503971 -17403599 + L1ME3 LINE L1 5683 5866 -296 462 162 0 0 chr21 17503971 17504051 -17403519 - MADE1 DNA Mariner 0 80 1 2217 230 38 11 chr21 17504479 17505005 -17402565 + MLT1F LTR MaLR 3 542 0 1691 108 12 4 chr21 17505704 17505955 -17401615 - L1MC1 LINE L1 -10 6323 6071 21 36 0 0 chr21 17506112 17506140 -17401430 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 17506257 17506286 -17401284 + AT_rich Low_complexity Low_complexity 1 29 0 370 232 88 41 chr21 17506965 17507159 -17400411 - L1M4 LINE L1 -1825 4321 4119 2417 238 81 37 chr21 17507224 17508149 -17399421 + L1ME2 LINE L1 4493 5376 -788 1825 153 53 0 chr21 17508149 17508430 -17399140 - AluJb SINE Alu -16 296 1 2417 238 81 37 chr21 17508430 17508591 -17398979 + L1ME2 LINE L1 5376 5528 -636 2057 129 0 3 chr21 17508591 17508885 -17398685 + AluSx SINE Alu 1 293 -19 2417 238 81 37 chr21 17508885 17509382 -17398188 + L1ME2 LINE L1 5528 6149 -15 1944 274 59 37 chr21 17509474 17510341 -17397229 + L1ME3A LINE L1 5280 6165 -5 1978 146 7 3 chr21 17510680 17510975 -17396595 + AluJb SINE Alu 2 297 -15 2498 94 19 38 chr21 17511391 17511435 -17396135 - THE1B LTR MaLR 0 364 321 2379 81 0 10 chr21 17511435 17511744 -17395826 + AluY SINE Alu 1 306 -5 2498 94 19 38 chr21 17511744 17512070 -17395500 - THE1B LTR MaLR -43 321 1 434 278 63 28 chr21 17512071 17512323 -17395247 - L1MDa LINE L1 -4893 1647 1387 286 183 141 0 chr21 17512320 17512391 -17395179 + L1MC/D LINE L1 5777 5857 -385 2948 217 52 72 chr21 17512407 17513447 -17394123 - L1MDa LINE L1 -5293 1428 409 2148 123 152 8 chr21 17513447 17513821 -17393749 - MSTA LTR MaLR 0 428 1 2948 217 52 72 chr21 17513821 17513870 -17393700 - L1MDa LINE L1 -6312 409 361 680 281 62 9 chr21 17514408 17514618 -17392952 + MIR SINE MIR 37 257 -5 342 236 0 38 chr21 17515058 17515164 -17392406 + LTR16B LTR ERVL 363 464 0 329 239 98 0 chr21 17515657 17515749 -17391821 + MIR SINE MIR 91 191 -71 192 250 191 0 chr21 17515911 17515979 -17391591 - MIR SINE MIR -170 92 12 1794 175 83 3 chr21 17516029 17516367 -17391203 - MLT1A1 LTR MaLR 0 365 1 517 211 30 85 chr21 17516369 17516568 -17391002 - LTR16A1 LTR ERVL -10 447 260 273 29 0 0 chr21 17516935 17516969 -17390601 + (CA)n Simple_repeat Simple_repeat 2 35 0 427 253 91 39 chr21 17517225 17517379 -17390191 - MIR SINE MIR 0 262 101 1523 215 34 3 chr21 17519641 17519994 -17387576 - MLT1A1 LTR MaLR -1 364 1 413 266 55 51 chr21 17520109 17520346 -17387224 - MLT1J LTR MaLR -1 510 273 237 226 16 0 chr21 17522141 17522203 -17385367 - MER20 DNA MER1_type 0 219 157 433 167 0 0 chr21 17522240 17522318 -17385252 - MER20 DNA MER1_type -57 162 85 204 231 0 0 chr21 17522916 17522968 -17384602 + (TATATG)n Simple_repeat Simple_repeat 1 52 0 24 91 0 0 chr21 17522978 17523044 -17384526 + AT_rich Low_complexity Low_complexity 1 66 0 489 288 125 45 chr21 17523377 17523838 -17383732 - MLT1H1 LTR MaLR -7 542 1 2209 176 30 10 chr21 17525135 17525645 -17381925 + LTR27 LTR ERV1 2 490 -11 2217 116 0 3 chr21 17525709 17526011 -17381559 + AluSx SINE Alu 1 301 -11 452 239 14 84 chr21 17526694 17526773 -17380797 + MER5A DNA MER1_type 57 123 -66 2038 103 3 56 chr21 17526773 17527092 -17380478 - AluSc SINE Alu -7 302 1 452 239 14 84 chr21 17527092 17527154 -17380416 + MER5A DNA MER1_type 123 188 -1 264 229 29 29 chr21 17527573 17527643 -17379927 + L2 LINE L2 2995 3064 -208 23 0 0 0 chr21 17528994 17529017 -17378553 + GC_rich Low_complexity Low_complexity 1 23 0 33 56 0 0 chr21 17529029 17529083 -17378487 + GC_rich Low_complexity Low_complexity 1 54 0 36 91 0 0 chr21 17529181 17529280 -17378290 + GC_rich Low_complexity Low_complexity 1 99 0 729 245 62 47 chr21 17532383 17532640 -17374930 + MIR SINE MIR 2 262 0 2240 105 7 3 chr21 17534061 17534367 -17373203 - AluSx SINE Alu -5 307 1 31 0 0 0 chr21 17534910 17534941 -17372629 + AT_rich Low_complexity Low_complexity 1 31 0 213 182 119 63 chr21 17535974 17536112 -17371458 - L2 LINE L2 -1457 1857 1711 378 0 0 0 chr21 17536112 17536154 -17371416 + (TG)n Simple_repeat Simple_repeat 2 43 0 458 253 55 100 chr21 17536223 17536512 -17371058 - MLT1L LTR MaLR -221 394 119 25 0 0 0 chr21 17536789 17536814 -17370756 + AT_rich Low_complexity Low_complexity 1 25 0 615 104 113 0 chr21 17537277 17537350 -17370220 - L1MA7 LINE L1 -54 6237 6174 180 0 0 0 chr21 17537350 17537370 -17370200 + (TG)n Simple_repeat Simple_repeat 1 20 0 615 104 113 0 chr21 17537370 17537411 -17370159 - L1MA7 LINE L1 -117 6174 6110 802 136 75 23 chr21 17537411 17537690 -17369880 + MER44D DNA MER2_type 1 597 -8 2330 107 0 0 chr21 17538920 17539220 -17368350 + AluSx SINE Alu 3 302 -10 235 323 0 0 chr21 17539458 17539523 -17368047 + MIR3 SINE MIR 98 162 -46 22 80 0 0 chr21 17539980 17540030 -17367540 + AT_rich Low_complexity Low_complexity 1 50 0 847 251 81 39 chr21 17540360 17540885 -17366685 - L2 LINE L2 -938 2376 1717 1125 248 60 23 chr21 17542362 17542845 -17364725 + L1ME1 LINE L1 4135 4635 -1511 766 191 52 5 chr21 17542845 17543039 -17364531 + L1ME1 LINE L1 5310 5512 -654 1077 124 16 21 chr21 17543039 17543225 -17364345 + MER30B DNA MER1_type 1 185 -5 1376 218 54 86 chr21 17543259 17543759 -17363811 + L1ME1 LINE L1 5515 5998 -168 21 36 0 0 chr21 17545051 17545079 -17362491 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 17545919 17545940 -17361630 + AT_rich Low_complexity Low_complexity 1 21 0 1636 150 33 0 chr21 17546937 17547211 -17360359 + MER1B DNA MER1_type 57 339 0 180 171 0 0 chr21 17547303 17547338 -17360232 - L2 LINE L2 -60 3253 3219 302 285 97 46 chr21 17547339 17547582 -17359988 - L2 LINE L2 -282 3031 2777 831 252 66 21 chr21 17547699 17547941 -17359629 - MIR SINE MIR 0 262 10 373 200 110 21 chr21 17547959 17548104 -17359466 - MER112 DNA MER1_type -8 252 95 348 351 52 16 chr21 17548150 17548341 -17359229 - L2 LINE L2 -684 2630 2433 500 306 45 5 chr21 17548926 17549125 -17358445 + MIR SINE MIR 41 247 -15 26 0 0 0 chr21 17550424 17550450 -17357120 + AT_rich Low_complexity Low_complexity 1 26 0 24 67 0 0 chr21 17551588 17551633 -17355937 + AT_rich Low_complexity Low_complexity 1 45 0 2459 116 14 6 chr21 17551825 17552186 -17355384 - THE1B LTR MaLR 0 364 1 27 49 0 0 chr21 17553071 17553112 -17354458 + AT_rich Low_complexity Low_complexity 1 41 0 2099 203 59 63 chr21 17553116 17553672 -17353898 - MLT2B3 LTR ERVL 0 554 1 3732 189 56 36 chr21 17553680 17553917 -17353653 - L1MD2 LINE L1 -40 6319 6088 2195 74 70 0 chr21 17553917 17554201 -17353369 + AluSx SINE Alu 1 304 -8 3732 189 56 36 chr21 17554201 17554505 -17353065 - L1MD2 LINE L1 -271 6088 5792 405 0 0 0 chr21 17554505 17554550 -17353020 + (TG)n Simple_repeat Simple_repeat 2 46 0 3732 189 56 36 chr21 17554550 17554847 -17352723 - L1MD2 LINE L1 -567 5792 5463 2474 47 0 7 chr21 17554895 17555191 -17352379 + AluY SINE Alu 1 294 -17 1830 125 39 11 chr21 17557493 17557773 -17349797 + AluSx SINE Alu 1 288 -24 40 49 0 0 chr21 17558323 17558384 -17349186 + AT_rich Low_complexity Low_complexity 1 61 0 2888 138 13 11 chr21 17558499 17558963 -17348607 - L1MB1 LINE L1 -11 6157 5693 1880 152 28 0 chr21 17558974 17559256 -17348314 + AluJb SINE Alu 1 290 -22 2141 81 16 52 chr21 17560114 17560423 -17347147 - AluY SINE Alu -13 298 1 28 0 0 0 chr21 17560760 17560788 -17346782 + AT_rich Low_complexity Low_complexity 1 28 0 662 221 28 44 chr21 17561625 17561806 -17345764 + MIR SINE MIR 85 262 0 182 36 0 36 chr21 17561838 17561866 -17345704 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1715 112 22 108 chr21 17561868 17562182 -17345388 - AluYb8 SINE Alu -31 287 1 216 0 0 0 chr21 17562443 17562467 -17345103 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 2211 82 26 7 chr21 17564042 17564346 -17343224 - AluY SINE Alu -1 310 1 22 0 0 0 chr21 17564770 17564792 -17342778 + AT_rich Low_complexity Low_complexity 1 22 0 444 297 63 14 chr21 17565090 17565312 -17342258 + MIR SINE MIR 26 258 -4 405 256 33 8 chr21 17565503 17565624 -17341946 - L1MC4 LINE L1 -5 8037 7914 300 240 153 47 chr21 17565862 17566244 -17341326 - L1MC4 LINE L1 -204 7757 7345 630 252 62 64 chr21 17566362 17566603 -17340967 - L1MC4 LINE L1 -694 7348 7107 2066 142 0 22 chr21 17566603 17566920 -17340650 - AluSx SINE Alu -2 310 1 630 252 62 64 chr21 17566920 17567098 -17340472 - L1MC4 LINE L1 -935 7107 6930 445 232 64 57 chr21 17567147 17567481 -17340089 - L1MC4a LINE L1 -1138 6670 6490 378 159 0 14 chr21 17567522 17567591 -17339979 - MER6B DNA MER2_type -46 164 97 746 68 10 0 chr21 17567592 17567695 -17339875 + L1PA6 LINE L1 5937 6040 -114 1299 94 0 22 chr21 17567725 17567906 -17339664 + AluSp SINE Alu 135 311 -2 909 62 0 0 chr21 17567909 17568022 -17339548 + L1PA5 LINE L1 6041 6153 -1 524 179 47 0 chr21 17568031 17568137 -17339433 - MER6B DNA MER2_type -165 111 1 1726 166 25 7 chr21 17568334 17568617 -17338953 - AluJo SINE Alu -24 288 1 21 36 0 0 chr21 17568669 17568697 -17338873 + AT_rich Low_complexity Low_complexity 1 28 0 433 285 78 21 chr21 17568710 17568991 -17338579 - L1MC4a LINE L1 -1742 6066 5770 1098 230 81 27 chr21 17569020 17569389 -17338181 - L1MC4a LINE L1 -2100 5708 5320 22 35 0 0 chr21 17569510 17569539 -17338031 + AT_rich Low_complexity Low_complexity 1 29 0 2207 111 0 10 chr21 17569578 17569884 -17337686 - AluSx SINE Alu -9 303 1 22 0 0 0 chr21 17570914 17570936 -17336634 + AT_rich Low_complexity Low_complexity 1 22 0 634 276 89 27 chr21 17571938 17572195 -17335375 + MER46C DNA MER2_type 65 337 -1 363 44 0 0 chr21 17574583 17574628 -17332942 + (TG)n Simple_repeat Simple_repeat 2 46 0 2497 61 0 0 chr21 17578762 17579059 -17328511 + AluY SINE Alu 1 297 -14 2282 100 3 0 chr21 17582005 17582306 -17325264 - AluSx SINE Alu -10 302 1 1644 113 46 99 chr21 17582515 17582664 -17324906 - AluSg SINE Alu -41 269 141 2305 113 0 3 chr21 17582664 17582965 -17324605 - AluSx SINE Alu -12 300 1 1644 113 46 99 chr21 17582965 17583099 -17324471 - AluSg SINE Alu -169 141 1 811 325 100 50 chr21 17584012 17584940 -17322630 - L2 LINE L2 -256 3016 2036 343 167 14 0 chr21 17584955 17585027 -17322543 - LTR30 LTR ERV1 -98 624 552 1432 134 392 0 chr21 17585028 17585385 -17322185 - pTR5 LTR ERV1 -406 2032 1536 5942 76 4 3 chr21 17585417 17586190 -17321380 - Harlequin LTR ERV1 0 8399 7626 1834 111 18 25 chr21 17586188 17586610 -17320960 - Harlequin LTR ERV1 -5156 1740 1275 1901 117 29 22 chr21 17586597 17586913 -17320657 - Harlequin LTR ERV1 -7577 1049 732 6426 85 12 8 chr21 17586899 17587761 -17319809 - Harlequin LTR ERV1 -3455 4944 4080 934 37 0 0 chr21 17587768 17587875 -17319695 - Harlequin LTR ERV1 -5260 3139 3033 2336 110 0 0 chr21 17588412 17588781 -17318789 + AluSg SINE Alu 1 369 0 22 0 0 0 chr21 17589029 17589051 -17318519 + AT_rich Low_complexity Low_complexity 1 22 0 4241 93 5 113 chr21 17589537 17590280 -17317290 + MER4A LTR ERV1 2 664 0 2357 97 0 3 chr21 17590515 17590824 -17316746 + AluSx SINE Alu 1 308 -4 518 251 117 57 chr21 17590839 17591086 -17316484 + L2 LINE L2 3045 3306 -7 1357 139 69 56 chr21 17592201 17592504 -17315066 - MER33 DNA MER1_type 0 324 18 2550 168 35 17 chr21 17592538 17592997 -17314573 + MLT1C LTR MaLR 1 467 0 211 296 23 0 chr21 17593031 17593119 -17314451 + CT-rich Low_complexity Low_complexity 2 91 0 326 321 18 28 chr21 17593657 17593687 -17313883 + MER91C DNA MER1_type 31 60 -80 2333 102 55 25 chr21 17593687 17594051 -17313519 + THE1C LTR MaLR 1 375 0 326 321 18 28 chr21 17594051 17594129 -17313441 + MER91C DNA MER1_type 60 138 -2 372 259 126 17 chr21 17594392 17594566 -17313004 + MLT1K LTR MaLR 396 588 0 980 146 12 24 chr21 17595351 17595515 -17312055 + FRAM SINE Alu 1 156 -20 201 39 0 0 chr21 17595925 17595951 -17311619 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 295 198 42 62 chr21 17596663 17596759 -17310811 - MLT1E3 LTR MaLR 0 624 531 2119 164 96 37 chr21 17596880 17597288 -17310282 + MSTB1 LTR MaLR 1 432 0 266 0 0 29 chr21 17597734 17597769 -17309801 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 393 302 109 47 chr21 17598143 17598418 -17309152 + L1ME4a LINE L1 5608 5899 -222 1989 180 102 64 chr21 17599465 17599889 -17307681 + MLT2B1 LTR ERVL 1 448 -72 2039 132 46 35 chr21 17599889 17600260 -17307310 - THE1C LTR MaLR 0 375 1 1989 180 102 64 chr21 17600260 17600336 -17307234 + MLT2B1 LTR ERVL 448 520 0 518 196 0 0 chr21 17600337 17600429 -17307141 + MLT1I LTR MaLR 318 409 0 1002 186 16 21 chr21 17601877 17602065 -17305505 - MER5A DNA MER1_type 0 189 3 2225 97 3 7 chr21 17602710 17603008 -17304562 - AluSc SINE Alu -12 297 1 222 294 0 0 chr21 17603526 17603577 -17303993 + MIR SINE MIR 42 92 -116 2313 116 59 34 chr21 17603842 17604197 -17303373 - THE1B LTR MaLR 0 364 1 542 244 97 11 chr21 17604406 17604582 -17302988 - MER112 DNA MER1_type -4 256 66 1442 181 62 81 chr21 17604750 17604924 -17302646 - MLT1A1 LTR MaLR -1 364 188 2146 129 0 7 chr21 17604924 17605227 -17302343 + AluSx SINE Alu 1 301 -11 1442 181 62 81 chr21 17605227 17605423 -17302147 - MLT1A1 LTR MaLR -177 188 1 2278 114 0 0 chr21 17605669 17605967 -17301603 - AluSx SINE Alu -14 298 1 1858 112 4 15 chr21 17607922 17608182 -17299388 + AluSx SINE Alu 36 292 -20 2645 167 76 13 chr21 17609357 17609883 -17297687 + MER89 LTR ERV1 1 559 0 2229 92 0 3 chr21 17610695 17611025 -17296545 - AluSg SINE Alu 0 329 1 759 206 0 19 chr21 17611527 17611682 -17295888 - MER5A DNA MER1_type -37 152 1 309 89 0 0 chr21 17611725 17611770 -17295800 + (TG)n Simple_repeat Simple_repeat 2 46 0 328 271 17 34 chr21 17612546 17612664 -17294906 - L1MC5 LINE L1 -35 7926 7811 682 246 60 40 chr21 17613117 17613272 -17294298 - L1MC5 LINE L1 -203 7758 7607 2639 55 0 3 chr21 17613272 17613584 -17293986 - AluY SINE Alu 0 311 1 682 246 60 40 chr21 17613584 17613798 -17293772 - L1MC5 LINE L1 -354 7607 7382 804 225 65 66 chr21 17613966 17614320 -17293250 - L1MC4 LINE L1 -740 7221 6903 1003 301 97 41 chr21 17614871 17616108 -17291462 + L2 LINE L2 1302 2641 -673 443 297 69 80 chr21 17616175 17616459 -17291111 + L2 LINE L2 2734 3020 -293 2317 104 0 0 chr21 17616459 17616758 -17290812 - AluSx SINE Alu 0 312 14 443 297 69 80 chr21 17616758 17616881 -17290689 + L2 LINE L2 3020 3143 -170 1988 149 98 0 chr21 17616881 17617197 -17290373 - MER7A DNA MER2_type -1 345 1 443 297 69 80 chr21 17617197 17617235 -17290335 + L2 LINE L2 3143 3180 -133 4419 83 24 0 chr21 17617235 17617776 -17289794 - MER41A LTR ERV1 0 554 1 443 297 69 80 chr21 17617776 17617885 -17289685 + L2 LINE L2 3180 3313 0 325 333 88 25 chr21 17618408 17618612 -17288958 - L1ME LINE L1 -650 5471 5255 616 319 48 26 chr21 17618973 17619324 -17288246 + MLT1J LTR MaLR 60 418 -93 482 140 40 40 chr21 17619338 17619438 -17288132 - U13 snRNA snRNA 0 104 5 1956 147 10 16 chr21 17619998 17620310 -17287260 - AluSx SINE Alu -2 310 1 7219 139 5 8 chr21 17621308 17622139 -17285431 - L1PA10 LINE L1 -5 6163 5331 4613 76 8 34 chr21 17622139 17622761 -17284809 - SVA Other Other -2 1384 779 7219 139 5 8 chr21 17622761 17623836 -17283734 - L1PA10 LINE L1 -837 5331 4250 1922 162 0 3 chr21 17624456 17624752 -17282818 + AluJo SINE Alu 1 295 -17 617 318 25 25 chr21 17624901 17625140 -17282430 - MIR SINE MIR -5 257 19 2285 122 3 0 chr21 17625185 17625496 -17282074 - AluSp SINE Alu 0 313 2 322 298 24 0 chr21 17626226 17626310 -17281260 - L3 LINE CR1 -4 1573 1488 435 162 0 0 chr21 17626839 17626907 -17280663 - MER116 DNA Mariner -7 73 6 264 339 18 18 chr21 17626921 17627033 -17280537 - MIR SINE MIR -121 141 30 2060 139 50 68 chr21 17627186 17627568 -17280002 + THE1C LTR MaLR 1 375 0 386 277 47 14 chr21 17627570 17627718 -17279852 + MIR SINE MIR 70 222 -40 431 199 39 105 chr21 17627786 17627967 -17279603 - MER58C DNA MER1_type 0 215 47 2429 266 119 43 chr21 17627971 17628135 -17279435 + L2 LINE L2 1345 1495 -1819 1656 170 14 0 chr21 17628135 17628417 -17279153 - AluJb SINE Alu -26 286 1 2429 266 119 43 chr21 17628417 17629294 -17278276 + L2 LINE L2 1495 2465 -849 2123 233 74 13 chr21 17629324 17629930 -17277640 - L1ME2 LINE L1 -20 6144 5502 805 272 96 4 chr21 17629938 17630188 -17277382 + L2 LINE L2 2460 2732 -582 1374 171 45 16 chr21 17630188 17630434 -17277136 - AluJo SINE Alu -17 295 43 659 290 103 17 chr21 17630495 17630843 -17276727 + L2 LINE L2 2805 3182 -131 567 250 21 21 chr21 17630921 17631065 -17276505 + L2 LINE L2 3152 3295 -18 211 281 9 20 chr21 17631441 17631566 -17276004 + MER5B DNA MER1_type 1 148 -30 1992 168 77 60 chr21 17631754 17632206 -17275364 + MLT1C LTR MaLR 2 461 -6 403 330 28 6 chr21 17632346 17632522 -17275048 + L1ME3A LINE L1 4783 4962 -1184 570 214 114 14 chr21 17632654 17632794 -17274776 - MIR SINE MIR -107 155 2 314 290 10 0 chr21 17632816 17632916 -17274654 + L1ME3A LINE L1 4987 5087 -1059 1001 299 51 28 chr21 17633012 17633659 -17273911 + L1ME3A LINE L1 5221 5886 -284 241 167 0 83 chr21 17633665 17633761 -17273809 + A-rich Low_complexity Low_complexity 5 92 0 3079 67 11 11 chr21 17633783 17634158 -17273412 + THE1C LTR MaLR 1 375 0 2736 125 17 11 chr21 17634158 17634245 -17273325 + THE1C-int LTR MaLR 1 86 -1638 4795 155 78 4 chr21 17634245 17635014 -17272556 - LTR1B LTR ERV1 0 826 1 2736 125 17 11 chr21 17635014 17635608 -17271962 + THE1C-int LTR MaLR 86 845 -879 674 151 7 26 chr21 17635614 17635766 -17271804 + CT-rich Low_complexity Low_complexity 4 152 0 1578 197 13 0 chr21 17635775 17636079 -17271491 - AluJo SINE Alu -4 308 1 438 89 0 0 chr21 17636079 17636135 -17271435 - MSTB LTR MaLR -370 56 1 3544 147 13 53 chr21 17636966 17637424 -17270146 - LTR26 LTR ERV1 0 603 175 3455 172 19 69 chr21 17637424 17638151 -17269419 - LTR8 LTR ERV1 0 691 1 3544 147 13 53 chr21 17638151 17638318 -17269252 - LTR26 LTR ERV1 -428 175 3 22 35 0 0 chr21 17638642 17638671 -17268899 + AT_rich Low_complexity Low_complexity 1 29 0 2090 140 7 3 chr21 17638691 17638998 -17268572 + AluSx SINE Alu 1 308 -4 196 311 33 0 chr21 17639460 17639521 -17268049 + L2 LINE L2 3223 3285 -28 1501 187 56 3 chr21 17640767 17640884 -17266686 + AluJo SINE Alu 1 110 -202 441 54 0 0 chr21 17640884 17640940 -17266630 + (TA)n Simple_repeat Simple_repeat 1 56 0 1501 187 56 3 chr21 17640940 17641106 -17266464 + AluJo SINE Alu 110 299 -13 2165 174 34 18 chr21 17642709 17643093 -17264477 + MLT1B LTR MaLR 1 390 0 2340 95 0 9 chr21 17643252 17643567 -17264003 - AluSx SINE Alu 0 312 1 571 272 66 25 chr21 17644688 17644910 -17262660 + MIR SINE MIR 17 244 -18 5790 61 96 0 chr21 17645119 17645856 -17261714 + L1PA7 LINE L1 5347 6154 0 2847 102 3 0 chr21 17645886 17646268 -17261302 + L1PB1 LINE L1 5769 6151 0 2514 206 24 5 chr21 17646291 17646844 -17260726 - L1MC1 LINE L1 -291 6042 5480 2432 78 3 0 chr21 17647717 17648025 -17259545 - AluY SINE Alu -2 309 1 272 186 278 10 chr21 17649328 17649425 -17258145 - L1MD1 LINE L1 -10 6232 6110 446 202 0 0 chr21 17649426 17649505 -17258065 - L1MD2 LINE L1 -87 6272 6194 1012 206 69 17 chr21 17649506 17649971 -17257599 - L1MD2 LINE L1 -232 6127 5593 21 0 0 0 chr21 17649971 17649992 -17257578 + AT_rich Low_complexity Low_complexity 1 21 0 216 135 0 0 chr21 17650011 17650048 -17257522 + (T)n Simple_repeat Simple_repeat 1 37 0 8110 16 0 0 chr21 17650051 17651248 -17256322 - L1PA2 LINE L1 0 6155 4959 10347 21 0 0 chr21 17651242 17652497 -17255073 + L1PA2 LINE L1 3689 4943 -1203 664 190 6 25 chr21 17652533 17652691 -17254879 - L1MD2 LINE L1 -766 5593 5439 276 30 0 0 chr21 17652978 17653011 -17254559 + (GA)n Simple_repeat Simple_repeat 2 34 0 2398 169 41 16 chr21 17654170 17654684 -17252886 - L1MC2 LINE L1 0 6344 5818 217 373 63 28 chr21 17654687 17654829 -17252741 - L2 LINE L2 0 3272 3126 334 297 0 0 chr21 17655241 17655332 -17252238 - MIR3 SINE MIR -7 201 111 311 68 373 0 chr21 17655362 17655421 -17252149 - AluSg SINE Alu -174 126 46 237 77 19 19 chr21 17655410 17655462 -17252108 + Alu SINE Alu 257 308 0 2173 102 3 0 chr21 17655825 17656190 -17251380 - AluSq SINE Alu 0 366 1 283 119 24 48 chr21 17656599 17656683 -17250887 + CT-rich Low_complexity Low_complexity 4 85 0 1636 175 29 0 chr21 17656880 17657160 -17250410 - AluJb SINE Alu -14 298 11 2111 125 23 0 chr21 17657179 17657484 -17250086 - AluSx SINE Alu 0 312 1 1072 217 60 11 chr21 17658218 17658704 -17248866 - MER50 LTR ERV1 -7 727 199 306 265 19 7 chr21 17658764 17658910 -17248660 - MER50 LTR ERV1 -566 168 10 717 171 15 98 chr21 17659346 17659551 -17248019 - MER5A DNA MER1_type -1 188 1 658 238 94 5 chr21 17660118 17660341 -17247229 - MLT2C1 LTR ERVL -154 243 1 273 153 111 14 chr21 17660963 17661035 -17246535 + MER4C LTR ERV1 1 79 -386 426 20 0 0 chr21 17661037 17661088 -17246482 + (CA)n Simple_repeat Simple_repeat 2 52 0 183 80 0 0 chr21 17661088 17661113 -17246457 + (CAA)n Simple_repeat Simple_repeat 3 27 0 414 182 16 74 chr21 17661185 17661306 -17246264 + MER4A LTR ERV1 212 325 -339 1224 147 32 121 chr21 17661292 17661640 -17245930 + MER4C LTR ERV1 149 465 0 1929 121 8 0 chr21 17662239 17662516 -17245054 + AluSx SINE Alu 23 301 0 246 254 45 119 chr21 17663171 17663305 -17244265 + MIR3 SINE MIR 82 205 -3 2127 141 33 28 chr21 17664043 17664405 -17243165 + THE1B LTR MaLR 1 364 0 1699 138 140 22 chr21 17664818 17665323 -17242247 - MER51B LTR ERV1 0 377 1 794 260 11 0 chr21 17665399 17665580 -17241990 + MER63A DNA MER1_type 2 184 -26 1849 122 6 16 chr21 17666921 17667275 -17240295 - MER4A LTR ERV1 0 664 256 824 88 20 34 chr21 17667250 17667397 -17240173 - MER4A LTR ERV1 -519 145 1 253 279 10 10 chr21 17667413 17667517 -17240053 + L1ME LINE L1 5597 5700 -421 23 0 0 0 chr21 17668605 17668628 -17238942 + AT_rich Low_complexity Low_complexity 1 23 0 1779 189 7 0 chr21 17668783 17669084 -17238486 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr21 17669096 17669126 -17238444 + AT_rich Low_complexity Low_complexity 1 30 0 29 70 0 0 chr21 17669200 17669257 -17238313 + AT_rich Low_complexity Low_complexity 1 57 0 32 57 0 0 chr21 17669293 17669346 -17238224 + AT_rich Low_complexity Low_complexity 1 53 0 264 258 47 47 chr21 17669479 17669669 -17237901 + L1M4 LINE L1 4860 5049 -1097 186 43 0 0 chr21 17669875 17669898 -17237672 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 5095 50 0 0 chr21 17669898 17670514 -17237056 - L1PA5 LINE L1 -16 6138 5523 304 220 120 60 chr21 17671191 17671341 -17236229 + L1ME4a LINE L1 5963 6121 0 1686 185 3 7 chr21 17672107 17672410 -17235160 - AluJb SINE Alu -10 302 1 1178 64 32 0 chr21 17672992 17673149 -17234421 + THE1C LTR MaLR 1 162 -213 2534 10 0 0 chr21 17673151 17673439 -17234131 - L1PA2 LINE L1 0 6155 5868 651 12 0 0 chr21 17673440 17673520 -17234050 + L1P2 LINE L1 5473 5552 -602 1188 152 37 0 chr21 17673520 17673737 -17233833 + THE1C LTR MaLR 151 375 0 4168 80 0 0 chr21 17674135 17674696 -17232874 + L1PB1 LINE L1 5586 6146 -5 326 324 64 48 chr21 17674773 17675119 -17232451 - L1ME LINE L1 -516 5605 5256 29 78 0 0 chr21 17675279 17675343 -17232227 + AT_rich Low_complexity Low_complexity 1 64 0 291 260 0 14 chr21 17676183 17676256 -17231314 + (CA)n Simple_repeat Simple_repeat 1 72 0 234 0 0 0 chr21 17676348 17676374 -17231196 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1865 161 3 7 chr21 17676375 17676661 -17230909 - AluJb SINE Alu -25 287 3 33 56 0 0 chr21 17676833 17676887 -17230683 + AT_rich Low_complexity Low_complexity 1 54 0 2541 77 0 0 chr21 17677138 17677449 -17230121 + AluY SINE Alu 1 311 0 2066 111 13 38 chr21 17678113 17678428 -17229142 - AluSg SINE Alu -3 307 1 2109 119 13 7 chr21 17680311 17680613 -17226957 - AluSx SINE Alu -8 304 1 525 166 41 0 chr21 17680677 17680822 -17226748 + (TA)n Simple_repeat Simple_repeat 1 151 0 2217 126 3 0 chr21 17680861 17681162 -17226408 + AluSp SINE Alu 1 302 -11 2193 117 0 7 chr21 17681423 17681721 -17225849 + AluSg SINE Alu 1 296 -14 2297 104 0 0 chr21 17681776 17682075 -17225495 - AluSx SINE Alu -13 299 1 493 333 38 6 chr21 17682225 17682408 -17225162 - MER5A DNA MER1_type 0 189 1 1280 150 0 0 chr21 17682715 17682915 -17224655 - MLT2B1 LTR ERVL -320 200 1 29 47 0 0 chr21 17686664 17686707 -17220863 + AT_rich Low_complexity Low_complexity 1 43 0 541 263 27 0 chr21 17687117 17687267 -17220303 - MIR SINE MIR -49 213 57 570 15 0 0 chr21 17687469 17687536 -17220034 + (TC)n Simple_repeat Simple_repeat 1 67 0 1429 172 4 41 chr21 17687756 17688024 -17219546 - AluJo SINE Alu -32 280 23 27 0 0 0 chr21 17688132 17688159 -17219411 + AT_rich Low_complexity Low_complexity 1 27 0 735 192 36 87 chr21 17689076 17689295 -17218275 - MER3 DNA MER1_type -1 208 1 1039 229 87 66 chr21 17690174 17690599 -17216971 + MLT1C LTR MaLR 34 593 0 2256 105 0 0 chr21 17690886 17691180 -17216390 - AluSg1 SINE Alu -15 294 1 928 263 85 38 chr21 17691523 17691617 -17215953 - L1MC4a LINE L1 -1878 5930 5842 2336 79 0 25 chr21 17691617 17691932 -17215638 - AluY SINE Alu -4 307 1 928 263 85 38 chr21 17691932 17692202 -17215368 - L1MC4a LINE L1 -1966 5842 5549 1559 217 37 40 chr21 17692283 17692870 -17214700 - MLT1E1 LTR MaLR -5 649 2 405 266 106 9 chr21 17692890 17693003 -17214567 - L1MC4a LINE L1 -2392 5416 5293 474 311 72 32 chr21 17693167 17693444 -17214126 - L1MC4a LINE L1 -1114 5032 4745 2406 107 0 0 chr21 17693712 17694021 -17213549 - AluSx SINE Alu -3 309 1 366 328 71 20 chr21 17694176 17694374 -17213196 - L2 LINE L2 0 3313 3106 21 71 0 0 chr21 17694603 17694645 -17212925 + AT_rich Low_complexity Low_complexity 1 42 0 444 283 36 14 chr21 17695275 17695413 -17212157 - MIR SINE MIR 0 262 122 626 182 25 0 chr21 17695598 17695719 -17211851 - MLT1E LTR MaLR -433 160 37 1964 146 19 13 chr21 17695878 17696187 -17211383 - AluJb SINE Alu -1 311 1 2068 118 7 7 chr21 17697170 17697466 -17210104 - AluSq SINE Alu -13 300 5 2210 101 3 0 chr21 17698140 17698428 -17209142 - AluSq SINE Alu -24 289 1 2230 112 3 13 chr21 17699084 17699398 -17208172 - AluY SINE Alu 0 311 1 198 71 0 0 chr21 17699742 17699770 -17207800 + (T)n Simple_repeat Simple_repeat 1 28 0 2227 99 3 0 chr21 17699834 17700179 -17207391 - AluSq SINE Alu 0 346 1 771 319 76 38 chr21 17701256 17701780 -17205790 - Tigger8 DNA MER2_type -116 550 7 2442 50 3 10 chr21 17702506 17702804 -17204766 - AluY SINE Alu -15 296 1 1049 192 54 16 chr21 17703615 17703927 -17203643 + LTR52 LTR ERVL 3 418 -3 251 54 54 0 chr21 17704354 17704391 -17203179 - MLT2D LTR ERVL -10 505 467 261 0 0 0 chr21 17704405 17704434 -17203136 + (CA)n Simple_repeat Simple_repeat 1 29 0 2103 171 9 3 chr21 17704443 17704789 -17202781 - MLT2D LTR ERVL -66 348 1 1409 208 17 94 chr21 17705191 17705595 -17201975 - MLT1A2 LTR MaLR 0 374 2 2456 57 0 10 chr21 17706243 17706541 -17201029 + AluSq SINE Alu 1 295 -18 2170 158 36 34 chr21 17707928 17708480 -17199090 - MLT2A2 LTR ERVL 0 554 1 229 167 42 0 chr21 17709027 17709075 -17198495 + CT-rich Low_complexity Low_complexity 2 51 0 27 0 0 0 chr21 17709247 17709274 -17198296 + AT_rich Low_complexity Low_complexity 1 27 0 194 299 103 0 chr21 17709880 17709977 -17197593 - MIR SINE MIR -66 196 90 2207 107 3 0 chr21 17710220 17710509 -17197061 - AluSc SINE Alu -19 290 1 231 236 0 0 chr21 17710698 17710753 -17196817 - L2 LINE L2 -1 3271 3217 477 56 22 124 chr21 17711085 17711174 -17196396 - MADE1 DNA Mariner 0 80 1 2086 127 0 3 chr21 17711436 17711720 -17195850 - AluJb SINE Alu -19 293 11 2390 76 3 0 chr21 17712331 17712622 -17194948 - AluSc SINE Alu -17 292 1 2077 141 39 30 chr21 17714833 17715194 -17192376 - THE1B LTR MaLR 0 364 1 2455 57 3 3 chr21 17715287 17715584 -17191986 - AluY SINE Alu -14 297 1 3794 161 41 9 chr21 17718606 17719287 -17188283 + MER50 LTR ERV1 9 711 -23 264 231 135 10 chr21 17719327 17719431 -17188139 + MIR SINE MIR 146 262 0 503 203 78 36 chr21 17719568 17719760 -17187810 + ORSL DNA AcHobo 53 252 -23 561 272 31 36 chr21 17719848 17720072 -17187498 + MIR SINE MIR 29 251 -11 23 33 0 0 chr21 17720917 17720947 -17186623 + AT_rich Low_complexity Low_complexity 1 30 0 979 145 31 6 chr21 17721284 17721443 -17186127 + THE1C LTR MaLR 213 375 0 757 325 77 48 chr21 17721499 17722192 -17185378 + L2 LINE L2 2017 2729 -585 251 91 0 23 chr21 17722576 17722620 -17184950 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 214 146 200 0 chr21 17722802 17722857 -17184713 + MIR SINE MIR 39 104 -104 180 0 0 0 chr21 17722952 17722972 -17184598 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 336 336 62 13 chr21 17723004 17723230 -17184340 + L2 LINE L2 2404 2640 -674 1992 93 0 4 chr21 17723243 17723501 -17184069 - AluSq SINE Alu -54 259 3 1992 94 0 4 chr21 17724389 17724643 -17182927 + AluSq SINE Alu 37 289 -24 180 0 0 0 chr21 17724654 17724674 -17182896 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 183 139 0 0 chr21 17724751 17724787 -17182783 + (TG)n Simple_repeat Simple_repeat 2 37 0 1368 183 49 107 chr21 17727142 17727589 -17179981 - MLT1C LTR MaLR -13 454 34 3442 108 58 13 chr21 17727605 17727629 -17179941 - L1MA3 LINE L1 0 6305 6284 231 114 0 0 chr21 17727629 17727664 -17179906 + (TA)n Simple_repeat Simple_repeat 2 36 0 3442 108 58 13 chr21 17727664 17728186 -17179384 - L1MA3 LINE L1 -21 6284 5734 204 240 0 0 chr21 17729048 17729098 -17178472 + A-rich Low_complexity Low_complexity 1 50 0 207 69 0 0 chr21 17729551 17729580 -17177990 + (TC)n Simple_repeat Simple_repeat 2 30 0 263 278 0 0 chr21 17730267 17730339 -17177231 + L2 LINE L2 3242 3313 0 24 32 0 0 chr21 17730974 17731005 -17176565 + AT_rich Low_complexity Low_complexity 1 31 0 2280 81 0 0 chr21 17731068 17731352 -17176218 - AluSg SINE Alu 0 310 27 2083 107 10 30 chr21 17732291 17732590 -17174980 + AluSx SINE Alu 1 293 -19 1062 220 62 22 chr21 17734416 17734689 -17172881 - MLT1H LTR MaLR -253 296 13 222 156 0 0 chr21 17735316 17735361 -17172209 + A-rich Low_complexity Low_complexity 1 45 0 2004 135 9 25 chr21 17735388 17735706 -17171864 + AluSq SINE Alu 1 313 0 1498 213 54 14 chr21 17737305 17737676 -17169894 - MER96B DNA MER1_type? -24 393 8 1746 97 0 4 chr21 17737702 17737929 -17169641 + AluSg SINE Alu 1 226 -84 1686 55 9 5 chr21 17737942 17738161 -17169409 - L1PA11 LINE L1 -19 6155 5936 1039 203 52 48 chr21 17738180 17738470 -17169100 - MLT1D LTR MaLR -212 293 3 906 203 75 56 chr21 17739198 17739464 -17168106 - MER58B DNA MER1_type -3 338 68 234 0 0 0 chr21 17741485 17741511 -17166059 + (T)n Simple_repeat Simple_repeat 1 26 0 2257 102 0 7 chr21 17741658 17741953 -17165617 + AluSx SINE Alu 1 293 -19 309 256 23 39 chr21 17742545 17742674 -17164896 + MLT1F LTR MaLR 72 198 -351 2035 225 34 36 chr21 17742849 17743316 -17164254 + MER77 LTR ERV1 127 592 -13 306 0 0 0 chr21 17743319 17743353 -17164217 + (CA)n Simple_repeat Simple_repeat 2 35 0 443 93 0 13 chr21 17743356 17743431 -17164139 + (GA)n Simple_repeat Simple_repeat 2 75 0 484 235 84 50 chr21 17743512 17743691 -17163879 + MLT1F LTR MaLR 353 537 -5 273 293 0 0 chr21 17743767 17743866 -17163704 + MLT1F-int LTR MaLR 277 375 -996 669 130 80 0 chr21 17744009 17744109 -17163461 + MER61E LTR ERV1 191 298 -271 228 261 52 70 chr21 17744768 17744883 -17162687 + MLT1F-int LTR MaLR 1028 1140 -231 1307 268 49 9 chr21 17745986 17746333 -17161237 - LTR16A LTR ERVL 0 450 90 218 337 34 0 chr21 17747247 17747336 -17160234 - MIR SINE MIR -66 142 51 1628 153 47 43 chr21 17747689 17747990 -17159580 - AluJb SINE Alu -10 302 1 520 27 27 0 chr21 17749814 17749888 -17157682 + (TA)n Simple_repeat Simple_repeat 1 76 0 438 314 36 60 chr21 17750073 17750404 -17157166 - MLT1J2 LTR MaLR -127 323 1 667 301 49 30 chr21 17750460 17750886 -17156684 - L1ME LINE L1 -448 5714 5281 2113 99 0 48 chr21 17750993 17751305 -17156265 - AluSg SINE Alu -13 297 1 531 175 51 7 chr21 17751479 17751616 -17155954 - L1MA8 LINE L1 -10 6281 6139 841 336 43 52 chr21 17751621 17751858 -17155712 - L1ME LINE L1 -1229 4917 4679 1591 179 103 83 chr21 17751858 17752306 -17155264 + MSTB2 LTR MaLR 1 457 0 841 336 43 52 chr21 17752306 17752841 -17154729 - L1ME LINE L1 -1467 4679 4152 239 309 54 48 chr21 17752870 17753184 -17154386 - L1ME LINE L1 -2049 4097 3782 29 28 0 0 chr21 17753366 17753402 -17154168 + AT_rich Low_complexity Low_complexity 1 36 0 485 155 62 16 chr21 17754438 17754567 -17153003 - L1MA8 LINE L1 -4 6287 6153 364 340 7 20 chr21 17755140 17755293 -17152277 - MIR SINE MIR -95 167 17 2084 121 139 13 chr21 17755672 17756052 -17151518 - MSTA LTR MaLR 0 428 1 9138 148 7 45 chr21 17756052 17757692 -17149878 - MSTA-int LTR MaLR 0 1580 3 1682 180 120 50 chr21 17757694 17757918 -17149652 - MSTA LTR MaLR 0 428 221 2044 144 0 0 chr21 17757918 17758203 -17149367 - AluSx SINE Alu -23 289 5 1682 180 120 50 chr21 17758203 17758378 -17149192 - MSTA LTR MaLR -207 221 1 195 204 0 0 chr21 17760159 17760203 -17147367 + CT-rich Low_complexity Low_complexity 2 45 0 332 279 45 45 chr21 17762320 17762474 -17145096 + MIR SINE MIR 15 168 -94 302 234 4 0 chr21 17762609 17762676 -17144894 + MIR SINE MIR 59 127 -81 258 146 0 0 chr21 17763125 17763166 -17144404 + MER94 DNA DNA 12 52 -82 474 366 60 55 chr21 17765835 17766149 -17141421 + L2 LINE L2 2858 3176 -96 2170 125 42 31 chr21 17766149 17766509 -17141061 + THE1B LTR MaLR 1 364 0 474 366 60 55 chr21 17766509 17766579 -17140991 + L2 LINE L2 3176 3244 -28 1616 126 39 11 chr21 17768251 17768537 -17139033 + L1MB1 LINE L1 5875 6168 0 21 36 0 0 chr21 17768818 17768846 -17138724 + AT_rich Low_complexity Low_complexity 1 28 0 1641 184 48 12 chr21 17769159 17769496 -17138074 - MER47A DNA MER2_type 0 366 18 255 258 0 0 chr21 17769736 17769798 -17137772 - MIR SINE MIR -111 151 90 2207 102 7 0 chr21 17770923 17771218 -17136352 - AluSc SINE Alu -12 297 1 505 340 44 10 chr21 17771254 17771457 -17136113 + MIR SINE MIR 33 242 -20 189 0 0 0 chr21 17771528 17771549 -17136021 + (T)n Simple_repeat Simple_repeat 1 21 0 207 0 0 0 chr21 17771985 17772008 -17135562 + (TG)n Simple_repeat Simple_repeat 1 23 0 537 314 81 0 chr21 17777394 17777579 -17129991 - MIR3 SINE MIR -6 202 3 21 82 0 0 chr21 17778827 17778876 -17128694 + AT_rich Low_complexity Low_complexity 1 49 0 408 111 0 32 chr21 17778997 17779060 -17128510 - AluJb SINE Alu -190 122 62 24 0 0 0 chr21 17779319 17779343 -17128227 + AT_rich Low_complexity Low_complexity 1 24 0 201 322 78 26 chr21 17779462 17779577 -17127993 - MER5A DNA MER1_type -32 157 37 313 333 68 8 chr21 17779482 17779599 -17127971 + MER5A DNA MER1_type 63 186 -3 2383 93 0 3 chr21 17779777 17780088 -17127482 + AluSx SINE Alu 1 310 -2 388 271 65 0 chr21 17780413 17780520 -17127050 + MER5B DNA MER1_type 2 115 -63 216 243 0 0 chr21 17780862 17780899 -17126671 - MIR SINE MIR -61 147 111 254 229 0 0 chr21 17780916 17780964 -17126606 - L2 LINE L2 -13 3300 3253 287 308 87 0 chr21 17781288 17781392 -17126178 - MIR SINE MIR -113 149 37 666 136 29 0 chr21 17784060 17784163 -17123407 - MER45A DNA AcHobo 0 178 73 4128 153 14 21 chr21 17785583 17786414 -17121156 + MER49 LTR ERV1 1 911 -12 357 297 47 0 chr21 17786477 17786605 -17120965 + MLT1J1 LTR MaLR 1 134 -312 420 292 89 51 chr21 17786612 17786848 -17120722 + MLT1J2 LTR MaLR 177 421 -29 245 325 50 81 chr21 17787240 17787400 -17120170 - MIR3 SINE MIR -18 190 36 26 30 0 0 chr21 17788296 17788329 -17119241 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr21 17788329 17788351 -17119219 + (CA)n Simple_repeat Simple_repeat 1 22 0 229 128 64 0 chr21 17788650 17788697 -17118873 + (TATATG)n Simple_repeat Simple_repeat 5 54 0 1261 61 11 11 chr21 17790232 17790412 -17117158 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 2180 96 0 4 chr21 17790412 17790852 -17116718 - AluSc SINE Alu 0 439 1 2205 102 10 10 chr21 17792325 17792628 -17114942 + AluSq SINE Alu 1 303 -10 440 335 31 21 chr21 17793696 17793890 -17113680 - MIR3 SINE MIR -8 200 5 2588 11 0 0 chr21 17794092 17794398 -17113172 - AluYa5 SINE Alu 0 306 1 2197 116 0 3 chr21 17795384 17795685 -17111885 - AluSq SINE Alu -13 300 1 548 294 0 35 chr21 17796608 17796778 -17110792 - MIR SINE MIR 0 262 99 24 32 0 0 chr21 17797740 17797771 -17109799 + AT_rich Low_complexity Low_complexity 1 31 0 609 278 110 5 chr21 17799231 17799440 -17108130 - MIR SINE MIR 0 262 32 2224 109 0 3 chr21 17800174 17800468 -17107102 + AluSg SINE Alu 3 295 -15 1985 109 16 36 chr21 17801023 17801327 -17106243 + AluSg1 SINE Alu 3 300 -9 306 229 29 0 chr21 17802358 17802428 -17105142 + CT-rich Low_complexity Low_complexity 3 74 0 379 298 8 24 chr21 17802461 17802585 -17104985 - L2 LINE L2 -1 3312 3191 530 199 56 107 chr21 17802572 17802716 -17104854 + MIR SINE MIR 26 159 -103 2406 78 0 7 chr21 17802716 17803022 -17104548 - AluSp SINE Alu -7 306 3 530 199 56 107 chr21 17803022 17803073 -17104497 + MIR SINE MIR 159 211 -51 644 106 0 0 chr21 17803409 17803494 -17104076 + AluS SINE Alu 1 85 -228 2338 82 3 13 chr21 17803519 17803824 -17103746 + AluSx SINE Alu 1 302 -10 1710 158 91 0 chr21 17803862 17804191 -17103379 + MER46B DNA MER2_type 3 236 0 2645 19 0 22 chr21 17804632 17804945 -17102625 - AluY SINE Alu -5 306 1 789 133 139 6 chr21 17805243 17805401 -17102169 + L1PB4 LINE L1 5968 6146 -10 2267 115 0 0 chr21 17805503 17805807 -17101763 + AluSg SINE Alu 1 304 -6 25 31 0 0 chr21 17806775 17806807 -17100763 + AT_rich Low_complexity Low_complexity 1 32 0 216 97 0 0 chr21 17806816 17806847 -17100723 + (T)n Simple_repeat Simple_repeat 1 31 0 1011 162 0 0 chr21 17809899 17810133 -17097437 + (TA)n Simple_repeat Simple_repeat 1 234 0 266 270 16 0 chr21 17812411 17812474 -17095096 + MIR SINE MIR 87 150 -112 26 30 0 0 chr21 17813340 17813373 -17094197 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr21 17815766 17815789 -17091781 + AT_rich Low_complexity Low_complexity 1 23 0 1166 186 18 23 chr21 17815821 17816041 -17091529 - MER20 DNA MER1_type 0 219 1 2270 73 0 0 chr21 17817916 17818191 -17089379 - AluY SINE Alu -2 309 35 1509 137 117 23 chr21 17818250 17818593 -17088977 + THE1C LTR MaLR 1 375 0 1957 111 10 20 chr21 17819376 17819673 -17087897 - AluY SINE Alu -15 296 3 601 219 0 25 chr21 17821494 17821613 -17085957 - L2 LINE L2 -17 3296 3181 1718 171 14 7 chr21 17821722 17822008 -17085562 + AluJb SINE Alu 5 292 -20 213 250 16 47 chr21 17822542 17822606 -17084964 + MIR SINE MIR 80 141 -121 258 156 0 0 chr21 17824131 17824176 -17083394 + (TG)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chr21 17825292 17825315 -17082255 + (T)n Simple_repeat Simple_repeat 1 23 0 250 152 34 0 chr21 17825658 17825717 -17081853 + GA-rich Low_complexity Low_complexity 2 62 0 192 179 0 0 chr21 17826866 17826905 -17080665 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 321 47 0 0 chr21 17826905 17826948 -17080622 + (CA)n Simple_repeat Simple_repeat 2 44 0 731 233 51 78 chr21 17829370 17829666 -17077904 - MLT1D LTR MaLR -5 500 175 428 137 0 41 chr21 17829669 17829742 -17077828 + Alu SINE Alu 209 278 -32 225 0 0 0 chr21 17829742 17829767 -17077803 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2104 97 48 3 chr21 17829770 17830059 -17077511 + AluSc SINE Alu 1 302 -7 446 204 53 38 chr21 17830121 17830253 -17077317 - MLT1D LTR MaLR -489 137 4 2242 186 98 11 chr21 17830942 17831420 -17076150 + MLT2B1 LTR ERVL 1 520 0 268 294 54 33 chr21 17831989 17832081 -17075489 + MIR SINE MIR 31 124 -84 4960 88 6 0 chr21 17835003 17835684 -17071886 - L1PA11 LINE L1 0 6174 5490 516 231 28 122 chr21 17835940 17836226 -17071344 + LTR37B LTR ERV1 6 264 -204 225 0 0 0 chr21 17836228 17836253 -17071317 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 739 161 36 0 chr21 17836253 17836390 -17071180 - L1PA10 LINE L1 -21 6147 6006 368 67 17 0 chr21 17836618 17836678 -17070892 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 234 0 0 0 chr21 17836746 17836772 -17070798 + (TCTTG)n Simple_repeat Simple_repeat 5 30 0 44 70 0 0 chr21 17839034 17839120 -17068450 + AT_rich Low_complexity Low_complexity 1 86 0 300 269 76 8 chr21 17839233 17839352 -17068218 + LOR1-int LTR ERV1 5368 5494 -2626 2010 175 86 54 chr21 17839376 17839878 -17067692 + MLT2B1 LTR ERVL 1 518 -2 1672 203 36 88 chr21 17840189 17840722 -17066848 + MLT1D LTR MaLR 1 505 0 1251 220 29 75 chr21 17841014 17841495 -17066075 + LTR37B LTR ERV1 10 468 0 2450 90 3 0 chr21 17844355 17844665 -17062905 - AluSp SINE Alu -2 311 1 251 342 18 18 chr21 17844892 17845006 -17062564 + L2 LINE L2 3157 3270 -2 189 280 20 0 chr21 17845011 17845061 -17062509 + L2 LINE L2 3004 3054 -218 23 33 0 0 chr21 17845105 17845135 -17062435 + AT_rich Low_complexity Low_complexity 1 30 0 2221 118 10 0 chr21 17845255 17845561 -17062009 - AluSx SINE Alu -3 309 1 307 341 40 8 chr21 17848008 17848134 -17059436 + L2 LINE L2 2981 3110 -162 4619 101 4 45 chr21 17848237 17848798 -17058772 + L1PB1 LINE L1 5418 6000 -151 2450 60 10 0 chr21 17848798 17849099 -17058471 + AluY SINE Alu 1 304 -7 2052 120 14 3 chr21 17849109 17849401 -17058169 + AluSc SINE Alu 1 295 -14 4619 101 4 45 chr21 17849401 17849592 -17057978 + L1PB1 LINE L1 6009 6150 -1 342 61 0 0 chr21 17850723 17850772 -17056798 + (TA)n Simple_repeat Simple_repeat 2 50 0 2392 102 0 0 chr21 17851894 17852199 -17055371 - AluSq SINE Alu -8 305 1 590 219 0 0 chr21 17852662 17852790 -17054780 + LTR16A1 LTR ERVL 324 451 -6 2563 105 19 11 chr21 17852991 17853352 -17054218 - THE1B LTR MaLR 0 364 1 191 184 26 0 chr21 17855280 17855318 -17052252 + MER5A DNA MER1_type 151 189 0 237 338 63 28 chr21 17855629 17855771 -17051799 + L2 LINE L2 3123 3269 -3 1364 184 16 29 chr21 17855857 17856001 -17051569 + MLT1B LTR MaLR 2 146 -244 1610 164 108 40 chr21 17856001 17856372 -17051198 - MSTD LTR MaLR 0 396 1 1364 184 16 29 chr21 17856372 17856536 -17051034 + MLT1B LTR MaLR 146 306 -84 268 353 79 76 chr21 17858932 17859147 -17048423 - L2 LINE L2 0 3272 3054 360 0 0 0 chr21 17859147 17859187 -17048383 + (TG)n Simple_repeat Simple_repeat 1 40 0 268 353 79 76 chr21 17859187 17859314 -17048256 - L2 LINE L2 -218 3054 2929 2449 69 3 0 chr21 17859437 17859741 -17047829 - AluY SINE Alu -6 305 1 906 177 140 24 chr21 17860212 17860711 -17046859 + MLT1E1 LTR MaLR 1 620 -34 1738 150 15 64 chr21 17860734 17861060 -17046510 - AluJb SINE Alu -2 310 1 231 108 0 0 chr21 17861060 17861097 -17046473 + MLT1E1 LTR MaLR 583 619 -5 1601 223 27 11 chr21 17861170 17861538 -17046032 + MLT1A2 LTR MaLR 1 374 0 1400 149 78 0 chr21 17861538 17861833 -17045737 + MER33 DNA MER1_type 5 322 -2 478 312 31 0 chr21 17862210 17862338 -17045232 + L2 LINE L2 3182 3313 0 237 83 0 0 chr21 17862453 17862489 -17045081 + (CA)n Simple_repeat Simple_repeat 2 37 0 205 330 11 0 chr21 17862524 17862615 -17044955 + (TA)n Simple_repeat Simple_repeat 2 93 0 198 250 192 50 chr21 17862742 17862862 -17044708 - L3 LINE CR1 -2 1575 1439 1115 211 83 75 chr21 17862882 17863174 -17044396 + MLT1A1 LTR MaLR 1 289 -76 2138 113 10 0 chr21 17863174 17863465 -17044105 + AluSc SINE Alu 1 294 -15 216 0 0 0 chr21 17863468 17863492 -17044078 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1115 211 83 75 chr21 17863492 17863555 -17044015 + MLT1A1 LTR MaLR 290 363 -2 307 291 126 8 chr21 17864900 17865027 -17042543 - L2 LINE L2 -619 2695 2554 185 318 15 0 chr21 17866515 17866581 -17040989 - L2 LINE L2 -999 2315 2249 1574 194 77 9 chr21 17867403 17867743 -17039827 + MLT1A1 LTR MaLR 1 363 -2 195 232 0 0 chr21 17867957 17868013 -17039557 + (TAA)n Simple_repeat Simple_repeat 2 57 0 1571 106 49 76 chr21 17868119 17868448 -17039122 - THE1C LTR MaLR -55 320 1 210 91 0 0 chr21 17869173 17869206 -17038364 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 189 0 0 0 chr21 17870881 17870902 -17036668 + (TTG)n Simple_repeat Simple_repeat 1 21 0 540 236 65 75 chr21 17870993 17871129 -17036441 - MIR SINE MIR -24 238 103 2463 102 34 8 chr21 17871129 17871482 -17036088 + THE1B LTR MaLR 1 362 -2 540 236 65 75 chr21 17871482 17871544 -17036026 - MIR SINE MIR -159 103 42 392 285 98 0 chr21 17871547 17871670 -17035900 - MER96 DNA MER1_type? -4 171 37 302 123 18 0 chr21 17873854 17873911 -17033659 + (CA)n Simple_repeat Simple_repeat 1 58 0 287 286 95 0 chr21 17874773 17874857 -17032713 - MIR SINE MIR -3 259 168 546 314 98 33 chr21 17875032 17875277 -17032293 - MIR SINE MIR 0 262 2 2662 215 30 41 chr21 17875897 17876507 -17031063 + MER77 LTR ERV1 3 605 0 2344 102 7 0 chr21 17876792 17877097 -17030473 - AluSq SINE Alu -6 307 1 416 314 88 0 chr21 17877161 17877320 -17030250 - MIR SINE MIR -44 218 46 21 57 0 0 chr21 17877881 17877916 -17029654 + AT_rich Low_complexity Low_complexity 1 35 0 651 276 55 61 chr21 17878480 17878773 -17028797 - L2 LINE L2 0 3313 3023 1504 227 28 0 chr21 17881345 17881671 -17025899 + Tigger7 DNA MER2_type 10 344 -2143 723 204 7 0 chr21 17881666 17881813 -17025757 + Tigger7 DNA MER2_type 2339 2486 -1 310 229 0 0 chr21 17882097 17882158 -17025412 - MIR3 SINE MIR -47 161 101 353 40 40 0 chr21 17884555 17884605 -17022965 + (GAAA)n Simple_repeat Simple_repeat 2 53 0 2280 95 3 0 chr21 17885080 17885375 -17022195 + AluSp SINE Alu 1 296 -17 22 0 0 0 chr21 17885987 17886009 -17021561 + AT_rich Low_complexity Low_complexity 1 22 0 2412 53 26 0 chr21 17886035 17886338 -17021232 + AluY SINE Alu 1 311 0 21 36 0 0 chr21 17887316 17887344 -17020226 + AT_rich Low_complexity Low_complexity 1 28 0 2051 140 10 3 chr21 17888207 17888515 -17019055 - AluSx SINE Alu -2 310 1 236 292 38 9 chr21 17888716 17888822 -17018748 + MLT1J1 LTR MaLR 51 159 -287 2260 81 0 3 chr21 17889632 17889961 -17017609 + AluSp SINE Alu 1 328 0 765 226 78 23 chr21 17891217 17891434 -17016136 + MLT1D LTR MaLR 8 236 -269 681 287 4 9 chr21 17892741 17892914 -17014656 - MER5B DNA MER1_type 0 189 1 340 102 0 0 chr21 17896010 17896069 -17011501 + L1PA13 LINE L1 6103 6161 -2 2344 102 3 0 chr21 17896075 17896380 -17011190 + AluSp SINE Alu 1 306 -7 543 236 194 18 chr21 17896848 17897013 -17010557 + MIR SINE MIR 53 246 -16 447 318 38 0 chr21 17898063 17898195 -17009375 - L2 LINE L2 0 3272 3136 1893 111 0 8 chr21 17901065 17901340 -17006230 - AluSx SINE Alu 0 311 39 22 35 0 0 chr21 17901347 17901376 -17006194 + AT_rich Low_complexity Low_complexity 1 29 0 455 246 112 0 chr21 17901843 17901977 -17005593 - MER20 DNA MER1_type -68 151 3 1991 103 4 4 chr21 17902010 17902273 -17005297 - AluSp SINE Alu -12 301 39 234 0 0 0 chr21 17904241 17904267 -17003303 + (TG)n Simple_repeat Simple_repeat 1 26 0 1862 143 51 38 chr21 17904425 17904795 -17002775 + THE1C LTR MaLR 1 375 0 342 289 33 0 chr21 17905013 17905103 -17002467 - MIR SINE MIR -75 187 95 220 313 24 36 chr21 17905544 17905627 -17001943 - L2 LINE L2 -15 3298 3217 444 232 40 79 chr21 17905644 17905821 -17001749 - MIR SINE MIR -73 189 20 1096 209 64 82 chr21 17906675 17907234 -17000336 + L1MC4 LINE L1 7494 8042 0 220 288 38 0 chr21 17907670 17907750 -16999820 - MIR SINE MIR -76 186 104 327 174 152 0 chr21 17908999 17909091 -16998479 + MIR SINE MIR 157 262 0 902 264 100 41 chr21 17909361 17909702 -16997868 + L2 LINE L2 2160 2520 -794 1056 200 5 0 chr21 17910482 17910672 -16996898 + Tigger7 DNA MER2_type 2 192 -2295 377 53 18 0 chr21 17910676 17910733 -16996837 + Tigger7 DNA MER2_type 2321 2378 -109 676 108 0 101 chr21 17910775 17910806 -16996764 + Tigger7 DNA MER2_type 2372 2405 -82 2262 109 0 0 chr21 17910806 17911108 -16996462 + AluSg SINE Alu 1 302 -8 676 108 0 101 chr21 17911108 17911205 -16996365 + Tigger7 DNA MER2_type 2405 2487 0 1067 260 72 49 chr21 17911216 17911799 -16995771 + L2 LINE L2 2712 3307 -6 499 314 78 46 chr21 17911905 17912278 -16995292 - L3 LINE CR1 -18 1559 1175 5729 98 33 10 chr21 17912491 17913732 -16993838 + L1PA16 LINE L1 4897 6157 -9 774 279 71 45 chr21 17913836 17914173 -16993397 + L2 LINE L2 2928 3273 -40 604 114 46 17 chr21 17914206 17914381 -16993189 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 521 42 0 168 chr21 17914404 17914467 -16993103 + MADE1 DNA Mariner 1 44 -36 2346 68 0 14 chr21 17914467 17914763 -16992807 - AluY SINE Alu -19 292 1 521 42 0 168 chr21 17914763 17914794 -16992776 + MADE1 DNA Mariner 44 79 -1 417 170 38 25 chr21 17914853 17915012 -16992558 + (TCTA)n Simple_repeat Simple_repeat 1 161 0 21 36 0 0 chr21 17915121 17915149 -16992421 + AT_rich Low_complexity Low_complexity 1 28 0 2034 160 45 8 chr21 17915639 17916240 -16991330 + MER39 LTR ERV1 1 688 -19 712 244 58 5 chr21 17916502 17916707 -16990863 + MER58A DNA MER1_type 9 224 0 298 284 0 0 chr21 17920496 17920570 -16987000 - MIR3 SINE MIR -9 199 126 2000 139 0 0 chr21 17920993 17921281 -16986289 + AluSx SINE Alu 13 300 -12 493 314 13 29 chr21 17921292 17921531 -16986039 - L1ME LINE L1 -373 5748 5514 2114 111 7 7 chr21 17922527 17922825 -16984745 - AluY SINE Alu -13 298 1 2428 88 3 0 chr21 17924070 17924376 -16983194 - AluSx SINE Alu -5 307 1 233 56 0 28 chr21 17924907 17924943 -16982627 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 393 39 0 0 chr21 17925389 17925440 -16982130 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2184 116 0 0 chr21 17925441 17925725 -16981845 - AluSg SINE Alu -26 284 1 932 109 29 11 chr21 17927825 17927999 -16979571 + CT-rich Low_complexity Low_complexity 4 180 0 239 118 0 0 chr21 17928001 17928035 -16979535 + (TCCC)n Simple_repeat Simple_repeat 4 37 0 1711 174 8 47 chr21 17929158 17929538 -16978032 + MLT1B LTR MaLR 1 365 -25 2310 98 0 0 chr21 17929605 17929901 -16977669 - AluSx SINE Alu -16 296 1 2179 226 103 73 chr21 17931206 17931963 -16975607 - L2 LINE L2 -206 3066 2313 2054 98 3 20 chr21 17931963 17932269 -16975301 + L1PA13 LINE L1 5860 6160 -3 2179 226 103 73 chr21 17932269 17932425 -16975145 - L2 LINE L2 -959 2313 2163 1860 130 4 0 chr21 17932430 17932691 -16974879 + AluSx SINE Alu 49 310 -2 750 240 65 18 chr21 17932692 17932921 -16974649 + MLT1C LTR MaLR 228 467 0 183 311 59 42 chr21 17934080 17934199 -16973371 - L2 LINE L2 -5 3308 3188 511 236 64 13 chr21 17935252 17935409 -16972161 - MER103 DNA DNA 0 166 2 2257 119 0 0 chr21 17935816 17936126 -16971444 - AluSx SINE Alu -2 310 1 2318 69 0 0 chr21 17936824 17937114 -16970456 - AluY SINE Alu -19 292 3 24 32 0 0 chr21 17937162 17937193 -16970377 + AT_rich Low_complexity Low_complexity 1 31 0 444 37 0 0 chr21 17937377 17937431 -16970139 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 1920 125 50 3 chr21 17937437 17937734 -16969836 - AluSq SINE Alu -2 311 1 418 245 188 37 chr21 17938456 17938701 -16968869 + MLT1I LTR MaLR 30 311 -98 31 0 0 0 chr21 17938742 17938773 -16968797 + AT_rich Low_complexity Low_complexity 1 31 0 1945 100 0 0 chr21 17939225 17939475 -16968095 - AluSx SINE Alu -4 308 59 319 307 98 12 chr21 17939845 17940008 -16967562 - L1M4 LINE L1 -1981 4165 3989 24 0 0 0 chr21 17940025 17940049 -16967521 + AT_rich Low_complexity Low_complexity 1 24 0 524 316 57 12 chr21 17940141 17940385 -16967185 - L1M4 LINE L1 -2310 3836 3582 28 99 0 0 chr21 17940544 17940635 -16966935 + AT_rich Low_complexity Low_complexity 1 91 0 663 159 13 19 chr21 17940705 17940862 -16966708 + CT-rich Low_complexity Low_complexity 1 156 0 1223 173 65 11 chr21 17941121 17941397 -16966173 + MER7A DNA MER2_type 1 309 -27 671 285 51 51 chr21 17941876 17942028 -16965542 - L1ME4a LINE L1 -57 6064 5913 399 41 0 0 chr21 17942028 17942077 -16965493 + (CA)n Simple_repeat Simple_repeat 2 50 0 671 285 51 51 chr21 17942077 17942489 -16965081 - L1ME4a LINE L1 -207 5914 5500 212 242 16 32 chr21 17944748 17944810 -16962760 + MIR SINE MIR 97 157 -105 770 196 35 0 chr21 17945330 17945503 -16962067 + MER96B DNA MER1_type? 1 179 -238 613 299 0 56 chr21 17945765 17945847 -16961723 - MIR SINE MIR -34 228 143 2769 94 5 0 chr21 17945847 17946220 -16961350 + THE1C LTR MaLR 1 375 0 9188 136 43 41 chr21 17946220 17947796 -16959774 + THE1C-int LTR MaLR 1 1580 0 2576 116 11 0 chr21 17947796 17948167 -16959403 + THE1C LTR MaLR 1 375 0 613 299 0 56 chr21 17948167 17948313 -16959257 - MIR SINE MIR -116 146 11 222 37 0 0 chr21 17949027 17949054 -16958516 + (TA)n Simple_repeat Simple_repeat 2 28 0 267 51 26 0 chr21 17949054 17949093 -16958477 - MADE1 DNA Mariner -3 77 38 326 121 0 17 chr21 17950436 17950494 -16957076 + (TG)n Simple_repeat Simple_repeat 2 58 0 620 196 84 69 chr21 17950842 17951244 -16956326 + LTR48 LTR ERV1 213 780 -7 2140 80 0 28 chr21 17952259 17952546 -16955024 + AluY SINE Alu 33 311 0 720 112 43 26 chr21 17952994 17953110 -16954460 + FLAM_C SINE Alu 8 125 -18 186 43 0 0 chr21 17954963 17954986 -16952584 + (A)n Simple_repeat Simple_repeat 1 23 0 30 0 0 0 chr21 17956858 17956888 -16950682 + AT_rich Low_complexity Low_complexity 1 30 0 1606 174 34 20 chr21 17956888 17957181 -16950389 - AluJb SINE Alu -15 297 1 578 154 0 0 chr21 17957676 17957780 -16949790 - MLT2B1 LTR ERVL 0 520 417 1378 182 106 0 chr21 17957856 17958130 -16949440 - MLT2B1 LTR ERVL -213 307 5 198 383 61 26 chr21 17958131 17958246 -16949324 - L2 LINE L2 -2043 1271 1153 655 273 33 58 chr21 17958596 17958871 -16948699 - L2 LINE L2 0 3313 3046 331 135 67 96 chr21 17959477 17959581 -16947989 - L2 LINE L2 -73 3240 3140 25 31 0 0 chr21 17960191 17960223 -16947347 + AT_rich Low_complexity Low_complexity 1 32 0 8300 115 8 4 chr21 17960778 17962069 -16945501 - HSMAR2 DNA Mariner -1 1301 6 1334 204 57 94 chr21 17963230 17964078 -16943492 + MER63 DNA MER1_type 75 1061 0 662 337 100 27 chr21 17964131 17964301 -16943269 + L2 LINE L2 2550 2706 -607 1629 169 37 0 chr21 17964301 17964654 -16942916 - AluJb SINE Alu 0 363 1 662 337 100 27 chr21 17964654 17965191 -16942379 + L2 LINE L2 2706 3313 0 562 95 0 2 chr21 17965570 17965822 -16941748 + AluSx SINE Alu 1 301 -10 198 333 26 13 chr21 17966059 17966137 -16941433 + MIR SINE MIR 111 189 -73 1602 166 17 47 chr21 17966153 17966484 -16941086 - AluJo SINE Alu 0 322 1 2324 119 0 3 chr21 17966622 17966934 -16940636 - AluSx SINE Alu -1 311 1 957 267 66 16 chr21 17968936 17969239 -16938331 - L2 LINE L2 0 3313 2996 426 264 71 42 chr21 17969633 17970083 -16937487 - Charlie2 DNA MER1_type -90 2772 2310 201 238 38 62 chr21 17970128 17970167 -16937403 - MIR SINE MIR -25 237 199 2341 105 0 0 chr21 17970167 17970471 -16937099 - AluSc SINE Alu -5 304 1 201 238 38 62 chr21 17970471 17970511 -16937059 - MIR SINE MIR -63 199 160 510 232 70 0 chr21 17970511 17970653 -16936917 - Charlie2 DNA MER1_type -745 2117 1966 252 250 0 0 chr21 17972753 17972821 -16934749 - L1P LINE L1 -1200 4946 4879 451 235 93 22 chr21 17973057 17973240 -16934330 + L1MC4 LINE L1 7846 8041 -1 28 38 0 19 chr21 17973353 17973369 -16934201 + AT_rich Low_complexity Low_complexity 1 16 -36 2146 121 3 0 chr21 17973369 17973659 -16933911 + AluSx SINE Alu 1 291 -21 28 38 0 19 chr21 17973659 17973695 -16933875 + AT_rich Low_complexity Low_complexity 16 52 0 1357 112 0 0 chr21 17973854 17974050 -16933520 + L1PA13 LINE L1 5964 6159 -4 308 303 49 42 chr21 17974740 17974882 -16932688 - MIR SINE MIR -24 238 96 857 261 57 56 chr21 17974883 17975412 -16932158 + MLT1E LTR MaLR 1 611 -33 2499 63 0 3 chr21 17975779 17976081 -16931489 + AluY SINE Alu 3 303 -8 2284 101 0 0 chr21 17977505 17977803 -16929767 + AluSc SINE Alu 1 298 -11 232 268 152 65 chr21 17979280 17979418 -16928152 + MIR3 SINE MIR 7 156 -52 280 320 56 32 chr21 17979679 17979804 -16927766 + MIR SINE MIR 14 141 -121 34 24 0 0 chr21 17979908 17979949 -16927621 + AT_rich Low_complexity Low_complexity 1 41 0 203 184 20 0 chr21 17979953 17980002 -16927568 + (TAG)n Simple_repeat Simple_repeat 2 51 0 424 83 0 28 chr21 17980153 17980225 -16927345 + (TCCC)n Simple_repeat Simple_repeat 3 72 0 213 195 0 0 chr21 17980226 17980267 -16927303 + CT-rich Low_complexity Low_complexity 4 44 0 2101 75 23 10 chr21 17980801 17981190 -16926380 - LTR7 LTR ERV1 -9 441 1 1753 156 7 45 chr21 17982504 17982812 -16924758 + AluJo SINE Alu 1 296 -16 26 50 0 0 chr21 17983136 17983176 -16924394 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr21 17983819 17983841 -16923729 + AT_rich Low_complexity Low_complexity 1 22 0 1395 206 3 41 chr21 17984550 17984895 -16922675 + MLT2C1 LTR ERVL 1 332 -65 241 100 17 33 chr21 17984899 17984959 -16922611 + (TCTA)n Simple_repeat Simple_repeat 2 60 0 514 259 18 59 chr21 17985323 17985493 -16922077 - MIR SINE MIR -7 255 93 2358 68 0 0 chr21 17986060 17986354 -16921216 + AluY SINE Alu 1 294 -17 192 111 0 0 chr21 17986641 17986677 -16920893 + (A)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr21 17986712 17986735 -16920835 + AT_rich Low_complexity Low_complexity 1 23 0 2294 95 0 16 chr21 17986792 17987107 -16920463 + AluSq SINE Alu 1 310 -3 784 235 55 0 chr21 17987663 17987863 -16919707 - MER20 DNA MER1_type 0 219 9 515 226 23 15 chr21 17988055 17988188 -16919382 - MLT1J2 LTR MaLR -316 134 1 2650 100 14 0 chr21 17988191 17988550 -16919020 - THE1B LTR MaLR 0 364 1 2414 87 3 3 chr21 17989067 17989378 -16918192 - AluY SINE Alu 0 311 1 223 260 0 68 chr21 17989409 17989482 -16918088 + MIR SINE MIR 168 235 -27 2167 108 20 3 chr21 17991643 17992008 -16915562 - AluSq SINE Alu 0 371 2 1827 138 77 41 chr21 17993019 17993381 -16914189 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 17994776 17994797 -16912773 + AT_rich Low_complexity Low_complexity 1 21 0 2463 60 7 0 chr21 17995815 17996114 -16911456 - AluY SINE Alu -10 301 1 915 185 76 38 chr21 17996218 17996429 -16911141 + MER20 DNA MER1_type 1 219 0 22 56 0 0 chr21 17997499 17997535 -16910035 + AT_rich Low_complexity Low_complexity 1 36 0 403 136 0 39 chr21 17997770 17997873 -16909697 + (TG)n Simple_repeat Simple_repeat 2 100 0 273 314 0 25 chr21 17998868 17998989 -16908581 + MIR SINE MIR 145 262 0 211 294 165 18 chr21 17998992 17999101 -16908469 + L2 LINE L2 3162 3286 -27 782 185 21 32 chr21 17999146 17999335 -16908235 + MLT1C LTR MaLR 55 241 -149 2076 118 9 40 chr21 17999337 17999685 -16907885 - MER1B DNA MER1_type -2 337 1 1071 181 66 26 chr21 17999685 17999894 -16907676 + MLT1C LTR MaLR 250 467 0 2232 115 0 0 chr21 18004412 18004707 -16902863 - AluSg SINE Alu -7 303 9 912 190 11 6 chr21 18004760 18004934 -16902636 + MER45A DNA AcHobo 4 178 0 1744 85 159 0 chr21 18005003 18005261 -16902309 + AluSg SINE Alu 2 300 0 2039 137 21 49 chr21 18005839 18006225 -16901345 - THE1C LTR MaLR 0 375 1 403 205 0 116 chr21 18006996 18007108 -16900462 + MER5B DNA MER1_type 8 106 -72 706 266 21 21 chr21 18007185 18007373 -16900197 - MER5A DNA MER1_type -1 188 1 263 374 107 15 chr21 18007458 18007728 -16899842 - L2 LINE L2 -341 2973 2679 183 314 49 39 chr21 18007795 18007897 -16899673 - L2 LINE L2 -792 2522 2420 373 354 54 0 chr21 18007944 18008091 -16899479 + MIR SINE MIR 80 234 -28 333 125 0 0 chr21 18009293 18009349 -16898221 + (TG)n Simple_repeat Simple_repeat 2 57 0 225 0 0 0 chr21 18009460 18009485 -16898085 + (TG)n Simple_repeat Simple_repeat 1 25 0 420 206 33 0 chr21 18009966 18010058 -16897512 + MIR SINE MIR 74 168 -94 211 214 0 31 chr21 18011213 18011311 -16896259 + CT-rich Low_complexity Low_complexity 1 95 0 2895 9 0 0 chr21 18011619 18011936 -16895634 - AluYb8 SINE Alu -1 317 1 2377 50 0 0 chr21 18012053 18012332 -16895238 - AluY SINE Alu -12 299 21 277 243 29 0 chr21 18012346 18012416 -16895154 - L1ME LINE L1 -494 5668 5597 450 350 49 29 chr21 18012708 18013054 -16894516 - L1MC4a LINE L1 -1965 5843 5491 30 59 0 0 chr21 18013088 18013139 -16894431 + AT_rich Low_complexity Low_complexity 1 51 0 253 238 158 50 chr21 18013226 18013327 -16894243 + L2 LINE L2 3197 3308 -5 1123 67 0 13 chr21 18013893 18014043 -16893527 - AluY SINE Alu -8 303 156 753 257 45 42 chr21 18014158 18014446 -16893124 - L1MC/D LINE L1 -2037 5771 5483 2086 116 13 7 chr21 18015248 18015551 -16892019 + AluSx SINE Alu 1 305 -7 715 255 28 105 chr21 18015664 18015971 -16891599 - MLT1C LTR MaLR -5 462 206 2068 96 7 3 chr21 18015971 18016253 -16891317 - AluSc SINE Alu -26 283 1 715 255 28 105 chr21 18016253 18016439 -16891131 - MLT1C LTR MaLR -261 206 7 361 194 19 46 chr21 18016444 18016552 -16891018 - L1ME3 LINE L1 -182 5980 5876 748 288 90 81 chr21 18017983 18018469 -16889101 - L2 LINE L2 0 3313 2833 3321 135 37 8 chr21 18018469 18018981 -16888589 - MER1A DNA MER1_type 0 527 1 748 288 90 81 chr21 18018981 18019038 -16888532 - L2 LINE L2 -480 2833 2778 2527 211 17 40 chr21 18019038 18019686 -16887884 + MER92B LTR ERV1 1 633 -3 748 288 90 81 chr21 18019686 18019814 -16887756 - L2 LINE L2 -535 2778 2631 276 30 0 0 chr21 18020002 18020035 -16887535 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2013 114 4 0 chr21 18020040 18020313 -16887257 - AluSc SINE Alu -35 274 1 1794 184 16 0 chr21 18020414 18020719 -16886851 - AluJo SINE Alu -2 310 1 188 381 95 16 chr21 18020734 18020860 -16886710 - L2 LINE L2 0 3272 3137 459 301 39 25 chr21 18021005 18021208 -16886362 - L2 LINE L2 -361 2953 2748 347 186 25 17 chr21 18022062 18022180 -16885390 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 189 74 0 0 chr21 18023411 18023438 -16884132 + (TC)n Simple_repeat Simple_repeat 1 27 0 216 111 56 19 chr21 18023455 18023509 -16884061 + CT-rich Low_complexity Low_complexity 1 56 0 2438 97 0 0 chr21 18025000 18025311 -16882259 - AluSx SINE Alu -1 311 1 23 86 0 0 chr21 18026415 18026473 -16881097 + AT_rich Low_complexity Low_complexity 1 58 0 2110 130 0 25 chr21 18026646 18026962 -16880608 + AluSx SINE Alu 5 312 0 329 304 52 22 chr21 18029322 18029457 -16878113 - MIR SINE MIR -96 166 28 2003 138 0 14 chr21 18029472 18029809 -16877761 - AluSx SINE Alu 0 333 1 22 0 0 0 chr21 18029936 18029958 -16877612 + AT_rich Low_complexity Low_complexity 1 22 0 341 333 23 31 chr21 18031002 18031131 -16876439 - MIR3 SINE MIR -44 164 37 627 62 0 0 chr21 18031210 18031290 -16876280 + MADE1 DNA Mariner 1 80 0 234 136 0 0 chr21 18032357 18032401 -16875169 + (TC)n Simple_repeat Simple_repeat 2 45 0 25 0 0 0 chr21 18033196 18033221 -16874349 + AT_rich Low_complexity Low_complexity 1 25 0 443 270 102 0 chr21 18034799 18034936 -16872634 - MIR SINE MIR -2 260 110 25 31 0 0 chr21 18037584 18037616 -16869954 + AT_rich Low_complexity Low_complexity 1 32 0 1755 140 20 20 chr21 18039193 18039493 -16868077 - Tigger1 DNA MER2_type 0 2418 2119 4654 127 35 10 chr21 18039474 18039991 -16867579 - Tigger1 DNA MER2_type -1667 751 208 2135 125 3 0 chr21 18039991 18040288 -16867282 + AluSx SINE Alu 1 298 -14 4654 127 35 10 chr21 18040288 18040502 -16867068 - Tigger1 DNA MER2_type -2210 208 1 270 219 29 48 chr21 18041624 18041729 -16865841 + L2 LINE L2 2685 2787 -527 668 303 44 91 chr21 18041769 18042251 -16865319 + L2 LINE L2 2855 3313 0 283 266 35 8 chr21 18043779 18043882 -16863688 - MIR SINE MIR -57 151 47 2145 109 0 50 chr21 18043887 18044071 -16863499 - AluSq SINE Alu -9 304 141 189 0 0 0 chr21 18044071 18044092 -16863478 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2145 109 0 50 chr21 18044092 18044227 -16863343 - AluSq SINE Alu -172 141 1 598 302 102 38 chr21 18044822 18045057 -16862513 + MIR SINE MIR 9 258 -4 216 267 0 0 chr21 18045368 18045413 -16862157 + L2 LINE L2 3210 3254 -18 6205 139 27 8 chr21 18045752 18047059 -16860511 + L1MA4A LINE L1 4967 6299 -4 658 230 66 17 chr21 18047055 18047282 -16860288 + L1MC4 LINE L1 6781 7062 -788 323 333 0 0 chr21 18047672 18047774 -16859796 + MLT1I LTR MaLR 282 383 -26 400 313 82 15 chr21 18047876 18048071 -16859499 - MIR SINE MIR -53 209 2 234 62 0 0 chr21 18049440 18049472 -16858098 + (TG)n Simple_repeat Simple_repeat 1 32 0 755 263 32 0 chr21 18050166 18050356 -16857214 + L2 LINE L2 1777 1972 -1342 594 286 89 10 chr21 18050696 18050899 -16856671 - MIR SINE MIR 0 262 44 981 170 45 63 chr21 18051003 18051226 -16856344 - Tigger2 DNA MER2_type -25 2693 2475 4128 142 44 10 chr21 18051298 18052007 -16855563 - Tigger2 DNA MER2_type -1985 733 1 943 253 14 5 chr21 18052090 18052311 -16855259 - MER58A DNA MER1_type -1 223 1 509 316 19 23 chr21 18052390 18052605 -16854965 + MLT1J LTR MaLR 3 216 -295 274 290 154 40 chr21 18052938 18053121 -16854449 + MIR SINE MIR 8 206 -55 306 223 21 11 chr21 18053156 18053250 -16854320 + (TA)n Simple_repeat Simple_repeat 2 96 0 270 234 149 0 chr21 18054018 18054112 -16853458 - L2 LINE L2 -681 2633 2526 22 70 0 0 chr21 18054120 18054163 -16853407 + AT_rich Low_complexity Low_complexity 1 43 0 638 334 92 9 chr21 18054267 18054584 -16852986 - L2 LINE L2 0 3313 2971 1536 217 20 9 chr21 18056274 18056615 -16850955 + MLT2D LTR ERVL 1 345 -69 200 240 0 13 chr21 18056644 18056719 -16850851 + (TA)n Simple_repeat Simple_repeat 2 75 0 23 0 0 0 chr21 18057082 18057105 -16850465 + AT_rich Low_complexity Low_complexity 1 23 0 639 278 67 54 chr21 18057711 18057953 -16849617 - MLT1H LTR MaLR -4 545 308 336 24 0 0 chr21 18057953 18057994 -16849576 + (TC)n Simple_repeat Simple_repeat 2 42 0 228 35 0 0 chr21 18057993 18058022 -16849548 + (TG)n Simple_repeat Simple_repeat 2 30 0 639 278 67 54 chr21 18057994 18058276 -16849294 - MLT1H LTR MaLR -241 308 1 1456 232 10 0 chr21 18058475 18058777 -16848793 - AluJo SINE Alu -7 305 1 390 243 143 14 chr21 18058787 18058927 -16848643 - MIR SINE MIR -74 188 31 238 286 105 38 chr21 18059396 18059501 -16848069 + L2 LINE L2 3158 3269 -3 291 143 18 0 chr21 18060174 18060230 -16847340 + (TG)n Simple_repeat Simple_repeat 2 58 0 477 47 0 0 chr21 18060286 18060350 -16847220 + (CA)n Simple_repeat Simple_repeat 1 64 0 1911 129 153 5 chr21 18061378 18061751 -16845819 - MSTA LTR MaLR 0 428 1 8897 185 27 2 chr21 18061751 18063363 -16844207 - MSTA-int LTR MaLR 0 1651 1 1738 162 182 3 chr21 18063363 18063726 -16843844 - MSTA LTR MaLR 0 428 1 244 111 37 0 chr21 18064291 18064345 -16843225 + (TA)n Simple_repeat Simple_repeat 1 56 0 301 289 67 13 chr21 18064609 18064758 -16842812 + MIR SINE MIR 106 262 0 62 63 0 0 chr21 18064763 18064874 -16842696 + AT_rich Low_complexity Low_complexity 1 111 0 242 344 115 0 chr21 18067174 18067296 -16840274 + L2 LINE L2 3137 3272 0 326 396 83 27 chr21 18068613 18069019 -16838551 + L3 LINE CR1 153 589 -988 2084 131 0 0 chr21 18069019 18069328 -16838242 - AluSx SINE Alu 0 309 1 326 396 83 27 chr21 18069328 18069367 -16838203 + L3 LINE CR1 589 624 -953 544 364 90 24 chr21 18069643 18070019 -16837551 + L3 LINE CR1 1022 1422 -155 695 256 87 48 chr21 18074421 18074800 -16832770 - HAL1b LINE L1 -236 1112 719 2123 87 7 0 chr21 18076089 18076366 -16831204 + AluSp SINE Alu 3 281 -32 896 83 0 8 chr21 18076368 18076500 -16831070 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 251 157 20 0 chr21 18076854 18076905 -16830665 + (TATATG)n Simple_repeat Simple_repeat 2 53 0 1917 128 24 3 chr21 18077293 18077591 -16829979 + AluSg SINE Alu 1 304 -6 321 26 0 0 chr21 18077872 18077910 -16829660 + (TC)n Simple_repeat Simple_repeat 1 38 0 189 0 0 0 chr21 18078028 18078049 -16829521 + (TTA)n Simple_repeat Simple_repeat 1 21 0 243 0 0 0 chr21 18078737 18078764 -16828806 + (TA)n Simple_repeat Simple_repeat 2 28 0 253 281 37 12 chr21 18079201 18079283 -16828287 + L2 LINE L2 3184 3267 -5 2176 126 0 0 chr21 18081039 18081341 -16826229 - AluSx SINE Alu -10 302 1 201 305 0 17 chr21 18081545 18081604 -16825966 + MIR SINE MIR 33 90 -172 525 190 30 0 chr21 18083251 18083351 -16824219 - MER20 DNA MER1_type 0 219 117 236 227 23 0 chr21 18083467 18083511 -16824059 - MER20 DNA MER1_type -173 46 2 730 250 14 64 chr21 18083725 18084005 -16823565 - L2 LINE L2 -58 3255 2990 1997 190 68 15 chr21 18084009 18084409 -16823161 - MSTB LTR MaLR -5 421 1 270 308 87 43 chr21 18084431 18084616 -16822954 - L2 LINE L2 -337 2977 2785 188 361 0 0 chr21 18085123 18085195 -16822375 - L2 LINE L2 -12 3260 3189 993 321 76 50 chr21 18085515 18086329 -16821241 - L2 LINE L2 -477 2837 2003 589 277 39 30 chr21 18086539 18086770 -16820800 - L2 LINE L2 -3 3310 3078 719 330 48 43 chr21 18086835 18087274 -16820296 - L2 LINE L2 -337 2977 2537 228 286 24 24 chr21 18087247 18087331 -16820239 - MIR SINE MIR -177 85 2 1897 151 7 3 chr21 18087888 18088186 -16819384 - AluSx SINE Alu -13 299 1 3159 25 0 0 chr21 18088989 18089355 -16818215 + L1PA5 LINE L1 5782 6147 -7 212 79 53 0 chr21 18089365 18089403 -16818167 + A-rich Low_complexity Low_complexity 5 44 0 34 0 0 0 chr21 18090695 18090729 -16816841 + AT_rich Low_complexity Low_complexity 1 34 0 991 158 90 38 chr21 18090759 18091049 -16816521 + MER33 DNA MER1_type 1 299 -25 1692 242 40 40 chr21 18091049 18091297 -16816273 - L1M4 LINE L1 -1886 4260 4013 1714 165 10 26 chr21 18091297 18091600 -16815970 - AluJo SINE Alu -14 298 1 1692 242 40 40 chr21 18091600 18091976 -16815594 - L1M4 LINE L1 -2132 4014 3636 1507 202 28 3 chr21 18091999 18092281 -16815289 - AluJo SINE Alu -23 289 1 358 317 8 25 chr21 18093170 18093290 -16814280 - MER5A DNA MER1_type -2 187 70 303 293 103 52 chr21 18093462 18093752 -16813818 - HAL1 LINE L1 -111 2396 2092 426 336 33 29 chr21 18094062 18094303 -16813267 - HAL1 LINE L1 -780 1727 1486 444 322 55 12 chr21 18094383 18094784 -16812786 - HAL1 LINE L1 -1286 1221 804 837 252 24 5 chr21 18094833 18095039 -16812531 + MER20 DNA MER1_type 9 218 -1 346 321 69 13 chr21 18095578 18095737 -16811833 + L1ME4a LINE L1 5725 5892 -229 1303 174 80 77 chr21 18096057 18096356 -16811214 - AluJb SINE Alu -7 305 6 2025 141 3 7 chr21 18097508 18097989 -16809581 + AluSp SINE Alu 1 313 0 359 175 25 0 chr21 18097992 18098072 -16809498 + GA-rich Low_complexity Low_complexity 1 82 0 21 36 0 0 chr21 18099897 18099925 -16807645 + AT_rich Low_complexity Low_complexity 1 28 0 884 198 0 16 chr21 18099960 18100152 -16807418 + MER53 DNA DNA 1 189 0 49 76 0 0 chr21 18100477 18100582 -16806988 + AT_rich Low_complexity Low_complexity 1 105 0 21 0 0 0 chr21 18100774 18100795 -16806775 + AT_rich Low_complexity Low_complexity 1 21 0 573 276 9 63 chr21 18101273 18101494 -16806076 - MIR SINE MIR 0 262 54 2093 137 0 0 chr21 18101767 18102067 -16805503 - AluJb SINE Alu -7 305 6 664 132 0 0 chr21 18102084 18102198 -16805372 - L1MA8 LINE L1 -6 6285 6172 2123 53 4 4 chr21 18102198 18102460 -16805110 - AluY SINE Alu -8 303 42 2292 122 45 14 chr21 18102568 18102921 -16804649 - THE1B LTR MaLR 0 364 1 320 305 8 46 chr21 18103362 18103493 -16804077 + MIR SINE MIR 14 139 -123 1503 124 59 110 chr21 18103828 18104183 -16803387 - MER1B DNA MER1_type 0 337 1 198 281 35 0 chr21 18104184 18104241 -16803329 - L2 LINE L2 -515 2799 2741 1270 167 23 49 chr21 18104241 18104505 -16803065 + MER92B LTR ERV1 1 257 -379 940 145 7 0 chr21 18104500 18104638 -16802932 - Charlie3 DNA MER1_type -2571 139 1 333 0 0 0 chr21 18106123 18106160 -16801410 + (TG)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr21 18106219 18106240 -16801330 + AT_rich Low_complexity Low_complexity 1 21 0 238 309 53 21 chr21 18106242 18106336 -16801234 + MIR SINE MIR 150 246 -16 204 264 113 0 chr21 18108322 18108375 -16799195 - L2 LINE L2 -11 3302 3244 1744 189 41 23 chr21 18108568 18108912 -16798658 + MLT1A1 LTR MaLR 1 350 -15 817 183 7 0 chr21 18108904 18109046 -16798524 + MLT1A1 LTR MaLR 223 365 0 338 331 38 34 chr21 18109073 18109336 -16798234 - L2 LINE L2 -835 2479 2216 224 278 0 0 chr21 18111099 18111153 -16796417 + L2 LINE L2 3255 3308 -5 186 43 0 0 chr21 18111388 18111411 -16796159 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 255 350 88 22 chr21 18111598 18111735 -16795835 - MIR3 SINE MIR -61 147 2 180 344 89 0 chr21 18111929 18112019 -16795551 - L2 LINE L2 -11 3302 3205 246 373 32 16 chr21 18112772 18112898 -16794672 + L2 LINE L2 2956 3083 -189 22 0 0 0 chr21 18113739 18113761 -16793809 + AT_rich Low_complexity Low_complexity 1 22 0 226 271 34 0 chr21 18114725 18114784 -16792786 - MIR SINE MIR -110 152 92 449 151 0 85 chr21 18115089 18115195 -16792375 - L1MA6 LINE L1 -5 6295 6199 198 0 0 0 chr21 18118149 18118171 -16789399 + (TCCC)n Simple_repeat Simple_repeat 2 23 0 1037 116 6 0 chr21 18118170 18118334 -16789236 + (TTTC)n Simple_repeat Simple_repeat 1 165 0 1673 167 3 24 chr21 18118337 18118630 -16788940 - AluJb SINE Alu -25 287 1 32 0 0 0 chr21 18119956 18119988 -16787582 + AT_rich Low_complexity Low_complexity 1 32 0 1050 152 18 6 chr21 18122952 18123117 -16784453 + AluSp SINE Alu 1 167 -146 23 0 0 0 chr21 18123120 18123143 -16784427 + AT_rich Low_complexity Low_complexity 1 23 0 457 308 62 15 chr21 18123264 18123394 -16784176 + MIR SINE MIR 23 158 -104 608 299 0 0 chr21 18123434 18123578 -16783992 + MIR SINE MIR 2 145 -117 2039 178 28 30 chr21 18124177 18124736 -16782834 - MLT2A2 LTR ERVL 0 554 1 346 359 66 27 chr21 18125019 18125353 -16782217 - L2 LINE L2 -633 2681 2335 376 275 29 58 chr21 18125792 18125930 -16781640 + MIR SINE MIR 23 156 -106 279 294 12 35 chr21 18125986 18126071 -16781499 + L2 LINE L2 2851 2933 -380 753 299 55 11 chr21 18126336 18126610 -16780960 + L2 LINE L2 3028 3313 0 353 277 81 20 chr21 18127751 18127899 -16779671 + MIR SINE MIR 49 205 -57 231 149 75 60 chr21 18128028 18128095 -16779475 - MIR SINE MIR -66 142 75 186 259 19 0 chr21 18128280 18128334 -16779236 - L2 LINE L2 -70 3243 3189 1078 63 0 0 chr21 18128921 18129048 -16778522 + AluSp SINE Alu 172 298 -15 272 358 12 0 chr21 18129983 18130064 -16777506 - L2 LINE L2 0 3272 3191 360 67 0 0 chr21 18130093 18130138 -16777432 + L1PA7 LINE L1 1929 1973 -4173 189 74 0 0 chr21 18130147 18130174 -16777396 + (A)n Simple_repeat Simple_repeat 1 27 0 24624 75 10 9 chr21 18130176 18134362 -16773208 + L1PA7 LINE L1 1968 6154 0 255 336 73 9 chr21 18134484 18134594 -16772976 + L2 LINE L2 3156 3272 0 55 0 0 0 chr21 18135476 18135531 -16772039 + AT_rich Low_complexity Low_complexity 1 55 0 987 181 0 0 chr21 18135531 18135691 -16771879 - AluSg/x SINE Alu -23 287 128 2430 68 0 7 chr21 18135694 18136002 -16771568 - AluYa5 SINE Alu -5 306 1 21 0 0 0 chr21 18137091 18137112 -16770458 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr21 18137212 18137235 -16770335 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 343 207 0 0 chr21 18138128 18138186 -16769384 - MIR SINE MIR 0 262 205 27 29 0 0 chr21 18139104 18139138 -16768432 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr21 18139516 18139567 -16768003 + AT_rich Low_complexity Low_complexity 1 51 0 966 104 28 0 chr21 18140116 18140260 -16767310 + L1MA1 LINE L1 6149 6296 -6 26 30 0 0 chr21 18140260 18140293 -16767277 + AT_rich Low_complexity Low_complexity 1 33 0 604 292 96 32 chr21 18141129 18141348 -16766222 - MIR SINE MIR -19 243 11 585 252 84 68 chr21 18141511 18141624 -16765946 + L1MC4 LINE L1 7650 7760 -282 1821 193 13 24 chr21 18141624 18142002 -16765568 + MLT1A2 LTR MaLR 1 374 0 585 252 84 68 chr21 18142002 18142209 -16765361 + L1MC4 LINE L1 7760 7975 -67 2927 80 85 2 chr21 18142209 18142646 -16764924 + LTR19A LTR ERV1 1 473 -13 502 287 120 5 chr21 18143233 18143449 -16764121 + MIR SINE MIR 20 260 -2 198 0 0 0 chr21 18143751 18143773 -16763797 + (TA)n Simple_repeat Simple_repeat 2 23 0 383 319 46 65 chr21 18144078 18144108 -16763462 + MLT1L LTR MaLR 126 155 -460 924 216 18 53 chr21 18144108 18144335 -16763235 - MER20 DNA MER1_type 0 219 1 383 319 46 65 chr21 18144335 18144564 -16763006 + MLT1L LTR MaLR 155 380 -235 253 230 56 79 chr21 18144643 18144769 -16762801 + MLT1J2 LTR MaLR 11 133 -317 219 36 0 0 chr21 18145264 18145292 -16762278 + (CA)n Simple_repeat Simple_repeat 2 29 0 265 200 0 0 chr21 18145488 18145538 -16762032 - L2 LINE L2 0 3313 3264 192 222 148 19 chr21 18145500 18145554 -16762016 - MIR SINE MIR -7 255 195 217 200 138 31 chr21 18145760 18145825 -16761745 + MIR SINE MIR 44 115 -147 269 268 14 0 chr21 18148096 18148167 -16759403 + (TAGA)n Simple_repeat Simple_repeat 4 75 0 494 329 19 19 chr21 18148358 18148568 -16759002 - MIR SINE MIR 0 262 53 232 302 137 54 chr21 18149060 18149265 -16758305 - LTR33 LTR ERVL -101 420 199 314 111 0 0 chr21 18149394 18149439 -16758131 - LTR33 LTR ERVL -476 45 1 223 362 66 46 chr21 18150448 18150600 -16756970 + L2 LINE L2 2904 3058 -214 998 189 5 26 chr21 18151123 18151314 -16756256 - MER20 DNA MER1_type -9 210 24 21 0 0 0 chr21 18151727 18151748 -16755822 + AT_rich Low_complexity Low_complexity 1 21 0 2319 88 10 0 chr21 18154157 18154463 -16753107 + AluSg SINE Alu 1 309 -1 280 329 0 0 chr21 18156608 18156687 -16750883 + MIR3 SINE MIR 101 179 -29 217 250 14 0 chr21 18156711 18156783 -16750787 + (TA)n Simple_repeat Simple_repeat 1 73 0 324 249 43 20 chr21 18157334 18157614 -16749956 + (TA)n Simple_repeat Simple_repeat 1 286 0 33 25 0 0 chr21 18157649 18157689 -16749881 + AT_rich Low_complexity Low_complexity 1 40 0 2397 93 0 0 chr21 18157690 18158000 -16749570 + AluSg SINE Alu 1 310 0 338 113 0 32 chr21 18158001 18158063 -16749507 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 1159 114 27 16 chr21 18158108 18158292 -16749278 + MER30B DNA MER1_type 1 186 -4 2683 112 5 39 chr21 18159703 18160142 -16747428 + L1MA6 LINE L1 5447 5870 -430 2285 200 29 15 chr21 18161082 18161695 -16745875 - L1MC3 LINE L1 0 7785 6998 634 176 0 19 chr21 18161790 18161898 -16745672 - L1MC3 LINE L1 -1062 6723 6618 26 50 0 0 chr21 18161975 18162015 -16745555 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr21 18162588 18162609 -16744961 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr21 18162648 18162706 -16744864 + AT_rich Low_complexity Low_complexity 1 58 0 385 100 22 56 chr21 18163224 18163314 -16744256 - L1PA11 LINE L1 0 6174 6088 195 42 0 0 chr21 18163716 18163740 -16743830 + (GA)n Simple_repeat Simple_repeat 2 25 0 289 335 66 7 chr21 18163770 18163922 -16743648 - MIR SINE MIR -52 210 50 358 217 47 93 chr21 18165409 18165538 -16742032 + L2 LINE L2 3191 3313 0 224 174 22 0 chr21 18166019 18166065 -16741505 + (TAA)n Simple_repeat Simple_repeat 2 48 0 200 186 17 0 chr21 18167071 18167130 -16740440 + (TTGG)n Simple_repeat Simple_repeat 4 63 0 22 0 0 0 chr21 18168009 18168031 -16739539 + AT_rich Low_complexity Low_complexity 1 22 0 396 55 0 0 chr21 18170216 18170271 -16737299 + (CA)n Simple_repeat Simple_repeat 1 55 0 234 376 30 30 chr21 18171047 18171180 -16736390 - L2 LINE L2 0 3272 3140 319 320 81 35 chr21 18171149 18171321 -16736249 + L3 LINE CR1 1018 1197 -380 470 224 96 8 chr21 18171519 18171644 -16735926 + AluJo SINE Alu 1 136 -176 244 272 27 95 chr21 18172195 18172342 -16735228 + MLT1I LTR MaLR 5 141 -268 283 224 15 0 chr21 18172555 18172622 -16734948 + MLT1I LTR MaLR 340 407 -2 417 206 76 0 chr21 18172624 18172716 -16734854 + MIR SINE MIR 109 207 -55 220 321 46 30 chr21 18173650 18173781 -16733789 + L2 LINE L2 2131 2263 -1051 911 224 9 27 chr21 18174069 18174288 -16733282 - MER20 DNA MER1_type -2 217 3 345 368 15 0 chr21 18174476 18174609 -16732961 + L2 LINE L2 3179 3313 0 321 26 0 0 chr21 18174963 18175001 -16732569 + (A)n Simple_repeat Simple_repeat 1 38 0 639 293 76 13 chr21 18175398 18175623 -16731947 - MIR SINE MIR -4 258 20 427 231 0 0 chr21 18175631 18175739 -16731831 - L1MB5 LINE L1 -6 6168 6061 494 309 39 6 chr21 18175742 18175920 -16731650 - L2 LINE L2 -431 2883 2700 1807 119 0 4 chr21 18176051 18176295 -16731275 + AluSx SINE Alu 51 293 -19 450 285 98 33 chr21 18176347 18176561 -16731009 - MIR SINE MIR 0 262 35 206 318 91 79 chr21 18176550 18176802 -16730768 - L2 LINE L2 -203 3069 2815 351 311 79 46 chr21 18177169 18177449 -16730121 + L2 LINE L2 3025 3313 0 526 277 67 50 chr21 18177915 18178197 -16729373 - HAL1 LINE L1 0 2507 2221 1832 188 3 0 chr21 18178203 18178511 -16729059 - AluJb SINE Alu -1 311 3 239 135 58 0 chr21 18178612 18178664 -16728906 + CT-rich Low_complexity Low_complexity 5 59 0 220 191 0 0 chr21 18178676 18178718 -16728852 + CT-rich Low_complexity Low_complexity 1 42 0 421 223 19 19 chr21 18178809 18178912 -16728658 - HAL1 LINE L1 -1336 1171 1069 473 355 44 9 chr21 18179012 18179240 -16728330 - HAL1 LINE L1 -1571 936 701 247 197 212 0 chr21 18179644 18179710 -16727860 - HAL1 LINE L1 -2425 82 3 563 203 51 17 chr21 18179751 18179869 -16727701 + FLAM_A SINE Alu 3 124 -9 1022 223 30 21 chr21 18179882 18180115 -16727455 + AluJo SINE Alu 1 235 -77 39 0 0 0 chr21 18180140 18180179 -16727391 + AT_rich Low_complexity Low_complexity 1 39 0 752 179 6 0 chr21 18180286 18180442 -16727128 + CT-rich Low_complexity Low_complexity 3 159 0 927 246 32 0 chr21 18180503 18180723 -16726847 + LTR16C LTR ERVL 254 480 -11 941 108 0 0 chr21 18183360 18183490 -16724080 + AluSg/x SINE Alu 180 309 -1 253 316 101 43 chr21 18183716 18183994 -16723576 - L2 LINE L2 -590 2724 2431 1793 42 0 5 chr21 18184626 18184838 -16722732 - AluY SINE Alu -15 296 86 318 26 0 0 chr21 18184838 18184877 -16722693 + (TG)n Simple_repeat Simple_repeat 2 40 0 23 33 0 0 chr21 18186399 18186429 -16721141 + AT_rich Low_complexity Low_complexity 1 30 0 298 216 227 0 chr21 18186457 18186554 -16721016 - L1ME4a LINE L1 -38 6083 5965 1436 142 34 0 chr21 18186776 18187043 -16720527 - L1MA7 LINE L1 -5 6286 6011 535 350 14 9 chr21 18187547 18187764 -16719806 - MIR SINE MIR -44 218 1 288 256 45 90 chr21 18188045 18188126 -16719444 + MIR3 SINE MIR 81 155 -53 2227 125 19 27 chr21 18188126 18188493 -16719077 + THE1B LTR MaLR 1 364 0 288 256 45 90 chr21 18188493 18188544 -16719026 + MIR3 SINE MIR 155 207 -1 422 313 122 5 chr21 18188659 18188873 -16718697 - LTR16C LTR ERVL -28 463 225 23 54 0 0 chr21 18189780 18189817 -16717753 + AT_rich Low_complexity Low_complexity 1 37 0 28 48 0 0 chr21 18190156 18190198 -16717372 + AT_rich Low_complexity Low_complexity 1 42 0 895 227 82 26 chr21 18191591 18191855 -16715715 - MLT1C LTR MaLR 0 467 189 1564 153 82 7 chr21 18191855 18192362 -16715208 - LTR1B LTR ERV1 0 826 243 699 158 0 0 chr21 18192374 18192488 -16715082 - LTR1B LTR ERV1 -712 114 1 471 192 7 110 chr21 18192488 18192619 -16714951 - MLT1C LTR MaLR -274 193 78 23 68 0 0 chr21 18193134 18193178 -16714392 + AT_rich Low_complexity Low_complexity 1 44 0 197 229 146 0 chr21 18193982 18194030 -16713540 + L2 LINE L2 3204 3258 -14 1728 186 11 42 chr21 18194035 18194412 -16713158 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr21 18195824 18195846 -16711724 + AT_rich Low_complexity Low_complexity 1 22 0 308 274 12 0 chr21 18197310 18197394 -16710176 - L2 LINE L2 0 3313 3229 864 287 86 59 chr21 18198406 18199460 -16708110 + L1MEc LINE L1 348 1386 -4829 378 0 0 0 chr21 18199460 18199502 -16708068 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 864 287 86 59 chr21 18199502 18199523 -16708047 + L1MEc LINE L1 1386 1405 -4810 363 291 44 33 chr21 18199533 18199715 -16707855 + L1ME3 LINE L1 5787 5970 -196 1972 126 11 67 chr21 18199771 18200145 -16707425 + MER4A LTR ERV1 1 353 -311 402 130 0 29 chr21 18200188 18200257 -16707313 + MER4A LTR ERV1 356 422 -242 437 104 13 39 chr21 18200277 18200354 -16707216 + MER4C LTR ERV1 282 356 -109 268 230 11 58 chr21 18200353 18200440 -16707130 + MER4A LTR ERV1 582 664 0 291 261 19 0 chr21 18200440 18200559 -16707011 + L1ME3 LINE L1 6030 6155 -7 214 162 0 0 chr21 18200715 18200752 -16706818 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 24 53 0 0 chr21 18201523 18201561 -16706009 + AT_rich Low_complexity Low_complexity 1 38 0 942 183 30 0 chr21 18201569 18201766 -16705804 - L1MA7 LINE L1 -2 6289 6087 396 344 74 31 chr21 18202370 18202626 -16704944 + L1ME LINE L1 802 1068 -5566 210 37 0 0 chr21 18202768 18202795 -16704775 + (CCAA)n Simple_repeat Simple_repeat 2 28 0 849 286 42 45 chr21 18202824 18203352 -16704218 + L1ME LINE L1 1135 1660 -4987 406 315 27 14 chr21 18203358 18203504 -16704066 + L1ME LINE L1 1563 1710 -4832 2231 261 37 16 chr21 18203515 18203609 -16703961 + L1ME1 LINE L1 5510 5600 -566 2137 180 14 25 chr21 18203609 18204047 -16703523 + Tigger2a DNA MER2_type 2 434 0 2231 261 37 16 chr21 18204047 18204595 -16702975 + L1ME1 LINE L1 5600 6166 0 25 0 0 0 chr21 18204959 18204984 -16702586 + AT_rich Low_complexity Low_complexity 1 25 0 2006 114 3 14 chr21 18205435 18205732 -16701838 + AluSx SINE Alu 1 294 -18 218 294 0 0 chr21 18206330 18206381 -16701189 + L2 LINE L2 3210 3260 -12 406 329 36 0 chr21 18206589 18206729 -16700841 + MIR SINE MIR 65 209 -53 821 315 92 12 chr21 18206993 18207494 -16700076 + L1MC4 LINE L1 7120 7660 -382 348 226 32 0 chr21 18207749 18207842 -16699728 + L1MC4 LINE L1 7914 8009 -33 252 200 0 0 chr21 18208563 18208618 -16698952 + (TA)n Simple_repeat Simple_repeat 1 55 0 21 0 0 0 chr21 18209176 18209197 -16698373 + AT_rich Low_complexity Low_complexity 1 21 0 545 100 0 0 chr21 18210288 18210368 -16697202 + MADE1 DNA Mariner 1 80 0 813 209 51 76 chr21 18210498 18210870 -16696700 + MLT1A1 LTR MaLR 1 369 -27 23 0 0 0 chr21 18211736 18211759 -16695811 + AT_rich Low_complexity Low_complexity 1 23 0 316 231 13 0 chr21 18212802 18212880 -16694690 - MER20 DNA MER1_type -137 82 4 908 307 14 10 chr21 18213201 18213497 -16694073 + L1MD2 LINE L1 44 340 -6200 189 0 0 0 chr21 18213556 18213577 -16693993 + (CAG)n Simple_repeat Simple_repeat 3 23 0 1528 261 40 22 chr21 18213701 18214156 -16693414 + L1MD2 LINE L1 783 1245 -5298 32 43 0 0 chr21 18214198 18214244 -16693326 + AT_rich Low_complexity Low_complexity 1 46 0 1678 229 68 60 chr21 18214244 18214979 -16692591 + L1MD2 LINE L1 1229 1974 -4566 2150 124 50 14 chr21 18214979 18215341 -16692229 + THE1C LTR MaLR 1 375 0 981 279 60 69 chr21 18215358 18216305 -16691265 + MER52A LTR ERV1 274 1755 0 1793 233 46 44 chr21 18216405 18217300 -16690270 + L1MD2 LINE L1 1981 2874 -3666 1211 278 41 10 chr21 18217301 18217718 -16689852 + L1MD2 LINE L1 2911 3340 -3200 2328 269 56 18 chr21 18217822 18218729 -16688841 + L1MD2 LINE L1 3466 4407 -2133 3858 248 40 16 chr21 18218737 18220482 -16687088 + L1MD2 LINE L1 4956 6731 -22 225 330 54 0 chr21 18220897 18221009 -16686561 - MLT1J2 LTR MaLR -64 386 269 293 73 0 0 chr21 18221134 18221175 -16686395 + L1MA9 LINE L1 5785 5825 -343 575 170 0 0 chr21 18221175 18221269 -16686301 + AluJb SINE Alu 205 298 -14 1449 194 41 23 chr21 18221269 18221706 -16685864 + L1MA9 LINE L1 5820 6312 0 921 280 75 44 chr21 18225653 18225946 -16681624 + MLT2E LTR ERVL 30 331 -297 890 268 88 12 chr21 18226462 18226560 -16681010 + L1M4 LINE L1 3346 3435 -2711 3474 73 4 0 chr21 18226560 18227011 -16680559 + MLT2A2 LTR ERVL 1 453 0 890 268 88 12 chr21 18227011 18227322 -16680248 + L1M4 LINE L1 3435 3786 -2360 836 214 29 85 chr21 18227324 18227605 -16679965 + MLT2B1 LTR ERVL 1 265 -255 189 0 0 0 chr21 18229398 18229419 -16678151 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 564 159 89 83 chr21 18232725 18232882 -16674688 + MER50 LTR ERV1 10 167 -567 1026 144 15 77 chr21 18232972 18233167 -16674403 + AluSx SINE Alu 1 183 -129 1262 174 103 53 chr21 18233169 18233508 -16674062 + MER50 LTR ERV1 358 713 -21 490 255 73 42 chr21 18234442 18234634 -16672936 - Charlie8 DNA MER1_type -2149 268 71 370 319 53 9 chr21 18234697 18234810 -16672760 - L2 LINE L2 -7 3265 3148 24 53 0 0 chr21 18235306 18235344 -16672226 + AT_rich Low_complexity Low_complexity 1 38 0 198 143 0 0 chr21 18235695 18235730 -16671840 + (TTC)n Simple_repeat Simple_repeat 2 36 0 2158 107 0 23 chr21 18236858 18237168 -16670402 + AluSq SINE Alu 1 303 -10 1759 198 11 23 chr21 18237414 18237767 -16669803 - MLT1A1 LTR MaLR -15 350 2 2284 94 3 3 chr21 18238646 18238955 -16668615 + AluSc SINE Alu 1 309 0 219 69 0 0 chr21 18240260 18240289 -16667281 + (A)n Simple_repeat Simple_repeat 1 29 0 639 256 84 92 chr21 18241400 18241583 -16665987 - MIR SINE MIR 0 262 79 1694 168 0 21 chr21 18241583 18241869 -16665701 + AluJb SINE Alu 3 282 -30 219 69 0 0 chr21 18241872 18241901 -16665669 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 639 256 84 92 chr21 18241901 18241963 -16665607 - MIR SINE MIR -185 77 15 254 319 48 48 chr21 18243546 18244194 -16663376 + L1MEc LINE L1 992 1639 -4757 225 227 34 67 chr21 18244408 18244527 -16663043 + L1MEc LINE L1 1953 2067 -4329 503 287 7 0 chr21 18244557 18244707 -16662863 + L1MEc LINE L1 2177 2327 -4069 233 191 43 0 chr21 18244819 18244866 -16662704 + L2 LINE L2 3224 3272 0 22 0 0 0 chr21 18245902 18245924 -16661646 + AT_rich Low_complexity Low_complexity 1 22 0 50 83 0 0 chr21 18246022 18246142 -16661428 + AT_rich Low_complexity Low_complexity 1 120 0 1568 272 40 11 chr21 18246871 18247323 -16660247 - HERVL LTR ERVL -3044 2720 2256 1106 83 7 0 chr21 18247323 18247468 -16660102 - AluSg/x SINE Alu -10 300 155 1610 281 44 44 chr21 18247470 18248012 -16659558 - HERVL LTR ERVL -3501 2263 1719 1535 158 92 4 chr21 18248012 18248284 -16659286 - AluSg SINE Alu -14 296 1 1610 281 44 44 chr21 18248284 18248406 -16659164 - HERVL LTR ERVL -4044 1720 1599 301 317 20 0 chr21 18248403 18248504 -16659066 - HERVL LTR ERVL -3527 2127 2025 549 325 20 52 chr21 18248520 18248868 -16658702 - HERVL LTR ERVL -4085 1569 1233 236 210 25 25 chr21 18248891 18248972 -16658598 + (TA)n Simple_repeat Simple_repeat 1 81 0 216 200 0 0 chr21 18248990 18249035 -16658535 + (TATG)n Simple_repeat Simple_repeat 3 47 0 431 204 11 45 chr21 18249063 18249151 -16658419 + L1M4 LINE L1 5629 5713 -465 2053 196 42 53 chr21 18249155 18249700 -16657870 + L1MB8 LINE L1 5635 6173 -5 1193 287 43 21 chr21 18250402 18250824 -16656746 - MLT2E LTR ERVL 0 628 198 1875 197 11 11 chr21 18251514 18251879 -16655691 + MLT1A1 LTR MaLR 1 365 0 1037 251 50 14 chr21 18252010 18252368 -16655202 - MER69 DNA AcHobo -7 2519 2149 782 142 21 14 chr21 18252368 18252509 -16655061 - FLAM_C SINE Alu -1 142 1 902 189 76 31 chr21 18252773 18253090 -16654480 - MER69 DNA AcHobo -718 1808 1478 2173 123 3 0 chr21 18253302 18253631 -16653939 + AluSx SINE Alu 1 330 0 31 0 0 24 chr21 18254461 18254477 -16653093 + AT_rich Low_complexity Low_complexity 1 16 -25 1472 91 61 5 chr21 18254477 18254675 -16652895 + AluSg/x SINE Alu 82 290 -20 31 0 0 24 chr21 18254675 18254700 -16652870 + AT_rich Low_complexity Low_complexity 16 41 0 3856 276 31 41 chr21 18254961 18256064 -16651506 - MER69 DNA AcHobo -1115 1411 324 1598 202 52 6 chr21 18256064 18256391 -16651179 - MER61A LTR ERV1 0 343 2 3856 276 31 41 chr21 18256391 18256710 -16650860 - MER69 DNA AcHobo -2202 324 3 289 314 89 8 chr21 18259215 18259339 -16648231 - L2 LINE L2 0 3313 3180 1220 169 52 55 chr21 18259518 18259843 -16647727 - MER33 DNA MER1_type 0 324 1 444 283 58 8 chr21 18259938 18260058 -16647512 - L2 LINE L2 0 3313 3188 855 269 88 32 chr21 18260561 18260936 -16646634 - MSTD LTR MaLR 0 396 1 506 247 46 23 chr21 18261020 18261194 -16646376 + MER5B DNA MER1_type 1 178 0 530 261 150 0 chr21 18261561 18261714 -16645856 + MER5A DNA MER1_type 13 188 -1 2248 108 0 3 chr21 18262326 18262631 -16644939 - AluSx SINE Alu -8 304 1 291 54 0 0 chr21 18262844 18262862 -16644708 + (TG)n Simple_repeat Simple_repeat 1 55 0 291 54 0 0 chr21 18262862 18262899 -16644671 + (TG)n Simple_repeat Simple_repeat 2 38 0 267 290 0 10 chr21 18262928 18263028 -16644542 + (CATATA)n Simple_repeat Simple_repeat 6 104 0 475 227 27 53 chr21 18263602 18263752 -16643818 - LTR27 LTR ERV1 0 636 491 2357 192 8 30 chr21 18263809 18264314 -16643256 - LTR27 LTR ERV1 -140 496 3 545 221 122 17 chr21 18264523 18264695 -16642875 + MLT1D LTR MaLR 313 502 -3 866 95 5 58 chr21 18265202 18265392 -16642178 + (TCTCC)n Simple_repeat Simple_repeat 1 180 0 406 233 0 0 chr21 18265394 18265467 -16642103 + C-rich Low_complexity Low_complexity 5 77 0 1477 150 15 22 chr21 18265726 18265999 -16641571 + L1MC1 LINE L1 6063 6333 0 617 252 104 55 chr21 18266556 18266700 -16640870 - MER58A DNA MER1_type -2208 212 54 1567 38 0 0 chr21 18266700 18266883 -16640687 - AluY SINE Alu -2 309 127 617 252 104 55 chr21 18266883 18266940 -16640630 - MER58A DNA MER1_type -2366 54 1 289 136 51 0 chr21 18267265 18267324 -16640246 + (TA)n Simple_repeat Simple_repeat 2 63 0 2483 83 0 3 chr21 18268398 18268710 -16638860 - AluY SINE Alu 0 311 1 207 162 15 44 chr21 18269666 18269734 -16637836 + CT-rich Low_complexity Low_complexity 1 66 0 365 296 44 44 chr21 18270267 18270426 -16637144 + L1MC3 LINE L1 6428 6586 -1199 337 284 8 8 chr21 18270460 18270594 -16636976 - L1 LINE L1 -837 5309 5176 1705 78 0 0 chr21 18270627 18270833 -16636737 + AluY SINE Alu 10 215 -96 1471 149 110 65 chr21 18270833 18271262 -16636308 + LTR7 LTR ERV1 1 448 -2 606 72 52 0 chr21 18271263 18271360 -16636210 + AluY SINE Alu 210 311 0 871 200 5 23 chr21 18271362 18271577 -16635993 - L1 LINE L1 -995 5151 4941 402 318 4 14 chr21 18271772 18271953 -16635617 - L1M4 LINE L1 -3921 2723 2545 24 32 0 0 chr21 18271994 18272025 -16635545 + AT_rich Low_complexity Low_complexity 1 31 0 3200 235 60 34 chr21 18272061 18273454 -16634116 - L1M4 LINE L1 -4543 2103 674 1165 276 65 40 chr21 18273512 18274016 -16633554 - L1M4 LINE L1 -5999 543 27 731 141 25 0 chr21 18275184 18275305 -16632265 + AluJb SINE Alu 1 124 -188 207 0 0 0 chr21 18275305 18275328 -16632242 + (CAT)n Simple_repeat Simple_repeat 2 24 0 348 164 0 0 chr21 18276940 18277007 -16630563 + (TG)n Simple_repeat Simple_repeat 2 68 0 4075 132 5 5 chr21 18278605 18279239 -16628331 + MER41B LTR ERV1 2 635 0 25 31 0 0 chr21 18279265 18279297 -16628273 + AT_rich Low_complexity Low_complexity 1 32 0 410 191 0 76 chr21 18279469 18279509 -16628061 - MER5A DNA MER1_type -80 109 68 2330 107 0 0 chr21 18279509 18279818 -16627752 - AluSg SINE Alu 0 310 2 410 191 0 76 chr21 18279818 18279882 -16627688 - MER5A DNA MER1_type -121 68 13 4790 93 11 0 chr21 18279915 18280568 -16627002 + PABL_A LTR ERV1 1 660 0 220 305 106 53 chr21 18280586 18280737 -16626833 - MER5B DNA MER1_type -16 162 4 240 374 44 1 chr21 18281030 18281193 -16626377 - MIR SINE MIR -67 141 25 727 254 71 5 chr21 18281964 18282161 -16625409 + MIR SINE MIR 28 237 -25 744 175 92 13 chr21 18283656 18283885 -16623685 - Charlie1a DNA MER1_type -18 1437 1191 5505 120 12 1 chr21 18283892 18284719 -16622851 - L1PA13 LINE L1 -7 6156 5321 4453 217 34 46 chr21 18284719 18284947 -16622623 - Charlie1a DNA MER1_type -1552 1209 980 1981 107 7 28 chr21 18284947 18285238 -16622332 + AluSg SINE Alu 12 296 -14 4453 217 34 46 chr21 18285238 18286232 -16621338 - Charlie1a DNA MER1_type -1781 980 1 271 273 129 23 chr21 18286232 18286344 -16621226 + MLT1L LTR MaLR 145 270 -345 796 118 118 0 chr21 18286919 18287054 -16620516 - L1MA2 LINE L1 0 6304 6154 2738 99 0 21 chr21 18287140 18287523 -16620047 - THE1C LTR MaLR 0 375 1 180 0 0 0 chr21 18287711 18287731 -16619839 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2048 110 7 3 chr21 18288021 18288312 -16619258 + AluSg SINE Alu 1 292 -18 2331 119 0 0 chr21 18288391 18288701 -16618869 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr21 18289011 18289033 -16618537 + AT_rich Low_complexity Low_complexity 1 22 0 2185 121 30 3 chr21 18289034 18289373 -16618197 - L1PA14 LINE L1 -14 6147 5800 2442 74 7 0 chr21 18290653 18290962 -16616608 - AluY SINE Alu 0 311 1 205 362 38 19 chr21 18291572 18291677 -16615893 + L2 LINE L2 3157 3263 -9 492 236 146 55 chr21 18291993 18292137 -16615433 + MER5A DNA MER1_type 10 173 -16 2090 117 3 0 chr21 18292137 18292475 -16615095 + AluSp SINE Alu 1 339 0 492 236 146 55 chr21 18292475 18292494 -16615076 + MER5A DNA MER1_type 173 189 0 370 234 122 69 chr21 18293152 18293340 -16614230 - L2 LINE L2 0 3313 3116 1022 304 66 12 chr21 18296729 18297232 -16610338 - L1M4 LINE L1 -2530 3616 3087 228 178 0 41 chr21 18297325 18297398 -16610172 - L1ME LINE L1 -5198 872 803 1038 135 0 26 chr21 18297400 18297579 -16609991 - AluSg/x SINE Alu 0 304 130 1578 284 22 12 chr21 18297835 18298342 -16609228 - L1ME LINE L1 -5511 559 48 1670 45 10 0 chr21 18301765 18301963 -16605607 - AluY SINE Alu -16 295 96 1720 218 11 6 chr21 18303652 18304015 -16603555 - MLT1A1 LTR MaLR 0 365 1 22 56 0 0 chr21 18304745 18304781 -16602789 + AT_rich Low_complexity Low_complexity 1 36 0 2103 144 52 0 chr21 18304857 18305203 -16602367 + THE1B LTR MaLR 1 364 0 11215 117 2 1 chr21 18305203 18306781 -16600789 + THE1B-int LTR MaLR 1 1580 0 2095 131 87 0 chr21 18306781 18307116 -16600454 + THE1B LTR MaLR 1 364 0 1828 198 104 45 chr21 18307179 18307650 -16599920 + MLT1D LTR MaLR 1 499 -6 257 151 19 0 chr21 18307776 18307829 -16599741 + GA-rich Low_complexity Low_complexity 2 55 0 1054 157 0 0 chr21 18308603 18308756 -16598814 - AluJo SINE Alu -75 237 85 21 0 0 0 chr21 18309200 18309221 -16598349 + AT_rich Low_complexity Low_complexity 1 21 0 1118 269 59 49 chr21 18309319 18309791 -16597779 - MLT1H LTR MaLR 0 549 73 189 0 0 0 chr21 18310819 18310840 -16596730 + (TG)n Simple_repeat Simple_repeat 2 22 0 1670 130 16 0 chr21 18310974 18311221 -16596349 - AluSg SINE Alu -21 289 39 467 174 39 97 chr21 18312292 18312447 -16595123 + MER53 DNA DNA 1 146 -43 235 176 20 0 chr21 18313238 18313289 -16594281 + T-rich Low_complexity Low_complexity 2 53 0 2731 157 10 30 chr21 18313322 18313818 -16593752 + MER66B LTR ERV1 1 486 0 26 30 0 0 chr21 18314779 18314812 -16592758 + AT_rich Low_complexity Low_complexity 1 33 0 1544 238 54 31 chr21 18315406 18315885 -16591685 + L1MCc LINE L1 10 499 -5924 1273 251 102 78 chr21 18316010 18317008 -16590562 + L1MCc LINE L1 696 1718 -4896 614 315 54 21 chr21 18317009 18317288 -16590282 + L1MCc LINE L1 1786 2073 -4868 1449 216 111 28 chr21 18317288 18317719 -16589851 - MLT1C LTR MaLR 0 467 1 225 0 0 0 chr21 18318174 18318199 -16589371 + (TG)n Simple_repeat Simple_repeat 1 25 0 240 59 0 0 chr21 18319589 18319623 -16587947 + (TC)n Simple_repeat Simple_repeat 2 35 0 180 0 0 0 chr21 18319623 18319643 -16587927 + (CA)n Simple_repeat Simple_repeat 1 20 0 917 261 65 55 chr21 18319682 18320172 -16587398 + MLT1F LTR MaLR 23 517 -25 333 118 0 0 chr21 18320713 18320764 -16586806 + (CATA)n Simple_repeat Simple_repeat 2 52 0 24 32 0 0 chr21 18322448 18322479 -16585091 + AT_rich Low_complexity Low_complexity 1 31 0 6503 63 45 0 chr21 18322696 18324076 -16583494 + L1PA7 LINE L1 4731 6152 -2 344 306 6 50 chr21 18325593 18325753 -16581817 - MER5A DNA MER1_type -1 188 36 333 119 0 0 chr21 18325915 18325974 -16581596 + L1 LINE L1 4126 4184 -1962 4095 144 17 9 chr21 18325946 18326707 -16580863 + L1PA16 LINE L1 5357 6158 -8 470 312 77 34 chr21 18326733 18327031 -16580539 - L2 LINE L2 -4 3309 2999 24 53 0 0 chr21 18328722 18328760 -16578810 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr21 18330446 18330488 -16577082 + AT_rich Low_complexity Low_complexity 1 42 0 251 221 39 0 chr21 18330498 18330575 -16576995 + L1ME LINE L1 5517 5596 -525 180 77 0 0 chr21 18331363 18331389 -16576181 + (TCTA)n Simple_repeat Simple_repeat 1 26 0 237 108 0 0 chr21 18332455 18332492 -16575078 + (CA)n Simple_repeat Simple_repeat 2 38 0 409 30 20 238 chr21 18332918 18333019 -16574551 + MADE1 DNA Mariner 2 80 0 1780 116 0 44 chr21 18335692 18335967 -16571603 - AluY SINE Alu -9 302 40 1553 182 9 61 chr21 18335983 18336110 -16571460 + AluJo SINE Alu 1 133 -179 2150 123 3 0 chr21 18336110 18336411 -16571159 - AluSg SINE Alu -8 302 1 1553 182 9 61 chr21 18336411 18336612 -16570958 + AluJo SINE Alu 133 312 0 22 35 0 0 chr21 18336782 18336811 -16570759 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr21 18337062 18337094 -16570476 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr21 18337363 18337387 -16570183 + (CA)n Simple_repeat Simple_repeat 2 25 0 304 285 77 38 chr21 18338113 18338348 -16569222 - L1M4 LINE L1 -1221 4925 4682 3666 176 45 45 chr21 18338347 18339484 -16568086 - L1MB7 LINE L1 -9 6175 5043 221 267 0 17 chr21 18341334 18341394 -16566176 + T-rich Low_complexity Low_complexity 4 62 0 445 317 54 12 chr21 18341786 18341953 -16565617 + MIR SINE MIR 31 204 -58 1745 188 79 16 chr21 18342205 18342572 -16564998 - MLT1B LTR MaLR 0 390 1 13753 158 25 6 chr21 18343043 18345410 -16562160 - Tigger1 DNA MER2_type -7 2411 1 195 42 0 0 chr21 18347489 18347513 -16560057 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 671 332 78 42 chr21 18348156 18348902 -16558668 + L2 LINE L2 1866 2757 -557 22 56 0 0 chr21 18348950 18348986 -16558584 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr21 18349037 18349061 -16558509 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1873 95 65 4 chr21 18349064 18349326 -16558244 - AluSc SINE Alu -31 278 1 206 330 51 42 chr21 18349662 18349780 -16557790 + L2 LINE L2 3088 3206 -66 1962 122 36 47 chr21 18353598 18353984 -16553586 - L1MA3 LINE L1 0 6305 5924 2050 135 7 0 chr21 18354421 18354725 -16552845 + AluSg SINE Alu 1 306 -4 243 239 84 42 chr21 18354848 18354990 -16552580 + MER103 DNA DNA 18 165 -1 226 237 0 0 chr21 18355644 18355703 -16551867 + A-rich Low_complexity Low_complexity 1 59 0 225 320 62 0 chr21 18357659 18357756 -16549814 + L1MEc LINE L1 2419 2521 -3875 259 322 38 33 chr21 18357734 18357917 -16549653 + L1MEc LINE L1 2459 2642 -3573 2241 106 3 3 chr21 18358283 18358586 -16548984 - AluSx SINE Alu -9 303 1 1936 137 18 0 chr21 18359088 18359392 -16548178 + AluSx SINE Alu 1 309 0 2087 208 150 43 chr21 18359476 18360222 -16547348 - LTR1B LTR ERV1 0 826 1 214 178 0 0 chr21 18360349 18360394 -16547176 + A-rich Low_complexity Low_complexity 1 45 0 297 276 46 58 chr21 18360580 18360667 -16546903 + MER5A DNA MER1_type 9 94 -95 21 0 0 0 chr21 18361399 18361420 -16546150 + AT_rich Low_complexity Low_complexity 1 21 0 417 104 0 0 chr21 18361987 18362054 -16545516 - L1PB3 LINE L1 -1 6153 6087 1566 190 50 28 chr21 18362055 18362419 -16545151 - THE1C LTR MaLR -1 374 3 8032 145 50 65 chr21 18362426 18364027 -16543543 - THE1C-int LTR MaLR -1 1579 3 1643 161 64 44 chr21 18364029 18364390 -16543180 - THE1C LTR MaLR 0 375 8 4348 128 56 10 chr21 18364397 18365129 -16542441 - L1PB2 LINE L1 -64 6087 5322 1087 191 21 4 chr21 18365127 18365368 -16542202 + L1 LINE L1 4759 5003 -1143 1178 220 25 0 chr21 18365415 18365729 -16541841 + L1P LINE L1 4999 5320 -826 225 286 107 9 chr21 18367282 18367394 -16540176 - MLT1I LTR MaLR -6 403 281 3149 318 73 27 chr21 18369415 18370985 -16536585 - L2 LINE L2 -1635 1679 2 1512 193 0 11 chr21 18371081 18371361 -16536209 - AluJo SINE Alu -23 289 13 386 384 44 45 chr21 18371611 18372459 -16535111 - L2 LINE L2 -433 2881 2035 31 26 0 0 chr21 18373312 18373350 -16534220 + AT_rich Low_complexity Low_complexity 1 38 0 3854 82 18 35 chr21 18373917 18374107 -16533463 + MER41A LTR ERV1 1 193 -361 2269 96 0 3 chr21 18374107 18374398 -16533172 + AluSc SINE Alu 4 293 -16 3854 82 18 35 chr21 18374398 18374771 -16532799 + MER41A LTR ERV1 193 554 0 2977 117 23 20 chr21 18374969 18375561 -16532009 + MER4E LTR ERV1 1 766 0 2540 68 0 0 chr21 18376002 18376312 -16531258 - AluY SINE Alu -1 310 1 38 61 0 0 chr21 18376349 18376415 -16531155 + AT_rich Low_complexity Low_complexity 1 66 0 2209 155 32 58 chr21 18377075 18377572 -16529998 - LTR19A LTR ERV1 -2 484 1 655 340 93 18 chr21 18379038 18379426 -16528144 - L3 LINE CR1 -1 1576 1160 1684 171 0 39 chr21 18379568 18379873 -16527697 - AluJo SINE Alu -19 293 1 1456 215 113 42 chr21 18380335 18380837 -16526733 - MLT1F LTR MaLR 0 542 5 827 173 0 0 chr21 18380889 18381022 -16526548 - FLAM_C SINE Alu 0 133 1 210 303 128 18 chr21 18382157 18382266 -16525304 - L2 LINE L2 -240 3073 2953 183 364 10 10 chr21 18382635 18382734 -16524836 - L2 LINE L2 -339 2975 2877 530 211 24 16 chr21 18383062 18383185 -16524385 + L2 LINE L2 3186 3309 -4 372 277 21 0 chr21 18383227 18383321 -16524249 - L2 LINE L2 -1 3271 3176 879 101 30 12 chr21 18383330 18383499 -16524071 + (TCTA)n Simple_repeat Simple_repeat 3 174 0 456 284 24 30 chr21 18384909 18385078 -16522492 - MER5A DNA MER1_type -1 188 21 1399 141 47 8 chr21 18385364 18385740 -16521830 - L1M2 LINE L1 -743 5403 5142 306 250 24 0 chr21 18386782 18386866 -16520704 - MLT1G LTR MaLR -53 537 452 2270 137 22 3 chr21 18386933 18387290 -16520280 - THE1B LTR MaLR 0 364 1 349 222 0 0 chr21 18387397 18387469 -16520101 - MLT1H LTR MaLR -388 161 90 907 0 0 0 chr21 18387469 18387567 -16520003 - AluYb8 SINE Alu -8 310 213 278 61 0 0 chr21 18387567 18387600 -16519970 - MLT1H LTR MaLR -444 105 73 215 278 0 0 chr21 18388632 18388686 -16518884 + MIR SINE MIR 77 130 -132 203 182 68 34 chr21 18388733 18388821 -16518749 + (TATATG)n Simple_repeat Simple_repeat 2 92 0 415 298 53 11 chr21 18390538 18390726 -16516844 - LTR33A LTR ERVL 0 523 328 268 253 76 0 chr21 18390980 18391059 -16516511 + MER97c DNA MER1_type? 253 337 -753 557 178 46 23 chr21 18391412 18391586 -16515984 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 1567 172 37 91 chr21 18391586 18391994 -16515576 - MLT1B LTR MaLR -4 386 1 1697 187 7 0 chr21 18398732 18399005 -16508565 + AluJb SINE Alu 1 275 -37 1982 149 6 0 chr21 18399310 18399625 -16507945 + L1PA16 LINE L1 5779 6095 -71 516 139 0 0 chr21 18399643 18399722 -16507848 - AluSc SINE Alu -87 222 144 194 62 31 0 chr21 18399763 18399795 -16507775 + (TAAAA)n Simple_repeat Simple_repeat 4 36 0 342 298 127 33 chr21 18400043 18400224 -16507346 + MIR SINE MIR 17 214 -48 494 197 94 16 chr21 18400794 18400921 -16506649 + LTR16A LTR ERVL 307 443 -7 576 317 107 73 chr21 18401260 18401762 -16505808 - L2 LINE L2 -94 3219 2736 2177 126 7 0 chr21 18401762 18402064 -16505506 + AluSg SINE Alu 1 304 -6 576 317 107 73 chr21 18402064 18402521 -16505049 - L2 LINE L2 -577 2736 2241 2104 129 0 0 chr21 18402874 18403187 -16504383 - AluSx SINE Alu 0 313 1 213 39 0 0 chr21 18403323 18403349 -16504221 + (CA)n Simple_repeat Simple_repeat 1 26 0 319 313 73 70 chr21 18403464 18403714 -16503856 + L2 LINE L2 2995 3248 -65 311 64 0 21 chr21 18403714 18403761 -16503809 + (CTATT)n Simple_repeat Simple_repeat 1 46 0 319 313 73 70 chr21 18403761 18403826 -16503744 + L2 LINE L2 3248 3311 -2 210 143 0 0 chr21 18404296 18404331 -16503239 + (T)n Simple_repeat Simple_repeat 1 35 0 615 194 16 16 chr21 18404754 18404883 -16502687 + MER5B DNA MER1_type 1 129 -49 196 279 16 0 chr21 18404914 18404975 -16502595 + MER5B DNA MER1_type 116 177 -1 402 277 40 57 chr21 18404992 18405169 -16502401 + MER5B DNA MER1_type 1 174 -4 21 0 0 0 chr21 18405661 18405682 -16501888 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr21 18406180 18406225 -16501345 + AT_rich Low_complexity Low_complexity 1 45 0 3148 176 66 29 chr21 18406797 18406852 -16500718 - L1MC3 LINE L1 -11 7774 7722 2218 114 0 0 chr21 18406852 18407149 -16500421 - AluSx SINE Alu -15 297 1 3148 176 66 29 chr21 18407149 18407918 -16499652 - L1MC3 LINE L1 -63 7722 6877 1859 153 3 3 chr21 18407918 18408219 -16499351 - AluJb SINE Alu -11 301 1 3148 176 66 29 chr21 18408219 18408335 -16499235 - L1MC3 LINE L1 -908 6877 6767 1137 251 97 33 chr21 18409548 18409910 -16497660 + MLT1D LTR MaLR 3 387 -118 456 317 40 45 chr21 18409920 18410144 -16497426 + L2 LINE L2 3083 3305 -8 25 51 0 0 chr21 18410288 18410327 -16497243 + AT_rich Low_complexity Low_complexity 1 39 0 193 122 24 49 chr21 18410727 18410768 -16496802 - MIR SINE MIR -113 149 110 725 223 40 23 chr21 18410917 18411092 -16496478 + MER20 DNA MER1_type 1 178 -41 1256 273 81 33 chr21 18412660 18412707 -16494863 + MER20B DNA MER1_type 1 44 -740 273 98 0 0 chr21 18412707 18412748 -16494822 + (TG)n Simple_repeat Simple_repeat 2 42 0 1256 273 81 33 chr21 18412748 18413340 -16494230 + MER20B DNA MER1_type 44 671 -113 390 272 56 24 chr21 18413491 18413616 -16493954 - L2 LINE L2 -1 3312 3184 1004 196 67 44 chr21 18413625 18413895 -16493675 + LTR37B LTR ERV1 23 298 -170 23 33 0 0 chr21 18414183 18414213 -16493357 + AT_rich Low_complexity Low_complexity 1 30 0 2137 122 7 3 chr21 18414409 18414703 -16492867 + AluSq SINE Alu 2 296 -17 379 361 28 7 chr21 18415069 18415213 -16492357 + L1MEd LINE L1 782 928 -5488 330 267 78 96 chr21 18415521 18415791 -16491779 + L1MEd LINE L1 1287 1551 -4865 271 273 19 45 chr21 18415823 18415977 -16491593 + L1MEd LINE L1 1442 1591 -4835 1979 199 45 28 chr21 18416283 18416709 -16490861 + MLT1D LTR MaLR 70 502 -3 750 50 0 0 chr21 18417876 18417975 -16489595 + L1PA8 LINE L1 6072 6170 -2 25 0 0 0 chr21 18419182 18419207 -16488363 + AT_rich Low_complexity Low_complexity 1 25 0 842 141 0 0 chr21 18419545 18419680 -16487890 + L1PA15 LINE L1 6025 6159 -6 192 355 29 58 chr21 18420910 18421048 -16486522 + L2 LINE L2 263 396 -2918 786 312 20 56 chr21 18421112 18421468 -16486102 + L2 LINE L2 447 789 -2525 331 301 0 21 chr21 18421481 18421574 -16485996 - MER5B DNA MER1_type -11 167 77 708 145 10 12 chr21 18421673 18421861 -16485709 - MER4A LTR ERV1 -1 663 439 461 202 20 6 chr21 18421892 18422006 -16485564 - MLT1D LTR MaLR -8 497 398 331 56 37 0 chr21 18422120 18422174 -16485396 + (TC)n Simple_repeat Simple_repeat 1 56 0 565 192 75 0 chr21 18422342 18422462 -16485108 - MLT1D LTR MaLR -371 134 6 1673 315 83 20 chr21 18422468 18423702 -16483868 + L2 LINE L2 1660 3025 -288 2338 202 17 68 chr21 18423794 18424383 -16483187 - MER89 LTR ERV1 0 559 1 190 162 27 0 chr21 18424511 18424548 -16483022 + L2 LINE L2 3262 3299 -14 246 271 65 28 chr21 18425343 18425450 -16482120 - MIR SINE MIR -9 253 143 23 78 0 0 chr21 18425440 18425491 -16482079 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr21 18425939 18425967 -16481603 + AT_rich Low_complexity Low_complexity 1 28 0 200 186 0 0 chr21 18426024 18426067 -16481503 + L2 LINE L2 3271 3313 0 180 0 0 0 chr21 18426125 18426145 -16481425 + (TG)n Simple_repeat Simple_repeat 1 20 0 1917 137 99 6 chr21 18428177 18428541 -16479029 + L1MA5 LINE L1 5628 6025 -275 303 28 135 0 chr21 18428543 18428596 -16478974 - L1P LINE L1 -733 5398 5329 9453 66 8 9 chr21 18428594 18430106 -16477464 + L1PA7 LINE L1 3494 6147 -7 180 0 0 0 chr21 18430114 18430134 -16477436 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 5739 76 3 0 chr21 18430641 18432604 -16474966 - L1PA7 LINE L1 -11 6143 4105 189 281 31 31 chr21 18432705 18432769 -16474801 - MIR SINE MIR -123 139 76 1545 172 36 42 chr21 18433734 18434042 -16473528 + AluJo SINE Alu 1 306 -6 623 194 0 90 chr21 18434246 18434380 -16473190 - FLAM_C SINE Alu -21 122 1 545 209 54 23 chr21 18434420 18434549 -16473021 + FLAM_A SINE Alu 1 133 0 224 100 25 0 chr21 18434722 18434762 -16472808 + (GA)n Simple_repeat Simple_repeat 1 41 0 3001 143 20 35 chr21 18435078 18435169 -16472401 - MER67C LTR ERV1 -2 708 617 2197 110 0 13 chr21 18435169 18435477 -16472093 - AluSx SINE Alu -8 304 1 3001 143 20 35 chr21 18435477 18435929 -16471641 - MER67C LTR ERV1 -93 617 173 2242 109 3 0 chr21 18435935 18436237 -16471333 - AluSx SINE Alu -9 303 1 210 37 0 0 chr21 18436308 18436335 -16471235 + (TTG)n Simple_repeat Simple_repeat 2 28 0 1514 20 0 41 chr21 18436340 18436535 -16471035 - L1PA4 LINE L1 -16 6139 5953 359 259 116 9 chr21 18436574 18436686 -16470884 + MLT1H1 LTR MaLR 8 131 -424 406 242 50 0 chr21 18436871 18436970 -16470600 + MLT1H1 LTR MaLR 437 540 -15 2444 164 36 51 chr21 18436981 18437506 -16470064 - LTR26B LTR ERV1 -3 528 12 1301 192 50 4 chr21 18438327 18438588 -16468982 + AluJo SINE Alu 1 273 -39 984 113 11 11 chr21 18438595 18438772 -16468798 + (GAAA)n Simple_repeat Simple_repeat 1 177 0 249 33 0 0 chr21 18440357 18440387 -16467183 + (TA)n Simple_repeat Simple_repeat 1 30 0 312 229 10 83 chr21 18440420 18440516 -16467054 - L1MC4 LINE L1 -1340 6702 6614 267 31 0 0 chr21 18440550 18440582 -16466988 + (TA)n Simple_repeat Simple_repeat 1 32 0 249 33 0 0 chr21 18440605 18440635 -16466935 + (TA)n Simple_repeat Simple_repeat 1 30 0 288 0 0 0 chr21 18440703 18440735 -16466835 + (TA)n Simple_repeat Simple_repeat 1 32 0 816 288 17 4 chr21 18441192 18441425 -16466145 - MIR SINE MIR -26 236 1 25 0 0 0 chr21 18441571 18441596 -16465974 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr21 18441972 18441998 -16465572 + AT_rich Low_complexity Low_complexity 1 26 0 1128 134 0 17 chr21 18443299 18443471 -16464099 + AluSg/x SINE Alu 135 303 -7 2574 52 3 0 chr21 18447760 18448068 -16459502 + AluY SINE Alu 1 309 -2 2254 128 0 0 chr21 18449825 18450137 -16457433 - AluSx SINE Alu 0 312 1 1203 237 45 48 chr21 18450218 18450593 -16456977 - MLT1A2 LTR MaLR 0 374 1 22 35 0 0 chr21 18451915 18451944 -16455626 + AT_rich Low_complexity Low_complexity 1 29 0 28 0 0 0 chr21 18452295 18452323 -16455247 + AT_rich Low_complexity Low_complexity 1 28 0 328 326 45 34 chr21 18452410 18452588 -16454982 - MIR SINE MIR -73 189 10 231 36 0 0 chr21 18452878 18452906 -16454664 + (CA)n Simple_repeat Simple_repeat 1 28 0 194 229 0 0 chr21 18453430 18453465 -16454105 - L2 LINE L2 -33 3280 3246 298 319 11 43 chr21 18454147 18454241 -16453329 + L2 LINE L2 3160 3250 -22 194 244 0 0 chr21 18454446 18454487 -16453083 + MIR SINE MIR 212 252 -10 21 0 0 0 chr21 18455879 18455900 -16451670 + AT_rich Low_complexity Low_complexity 1 21 0 1976 90 9 87 chr21 18456510 18456832 -16450738 + AluSx SINE Alu 1 297 -15 1746 194 0 0 chr21 18458654 18458948 -16448622 + AluJb SINE Alu 5 298 -14 252 0 0 0 chr21 18458979 18459007 -16448563 + (A)n Simple_repeat Simple_repeat 1 28 0 333 112 12 25 chr21 18459511 18459591 -16447979 + (TA)n Simple_repeat Simple_repeat 1 79 0 1882 155 31 0 chr21 18461548 18461838 -16445732 + AluSx SINE Alu 1 299 -13 2757 159 24 5 chr21 18462000 18463315 -16444255 + L1PA16 LINE L1 4710 6166 0 537 283 54 24 chr21 18464757 18464962 -16442608 - MIR SINE MIR -3 259 49 307 327 31 57 chr21 18465145 18465304 -16442266 - MIR SINE MIR -67 195 41 2295 117 13 89 chr21 18466244 18466408 -16441162 - LTR23 LTR ERV1 0 437 262 1783 162 21 0 chr21 18466408 18466691 -16440879 - AluSx SINE Alu -23 289 1 2295 117 13 89 chr21 18466691 18466733 -16440837 - LTR23 LTR ERV1 -175 262 218 2314 101 0 3 chr21 18466733 18467041 -16440529 - AluSc SINE Alu -2 307 1 2295 117 13 89 chr21 18467041 18467304 -16440266 - LTR23 LTR ERV1 -219 218 3 2094 68 0 84 chr21 18467691 18468067 -16439503 - AluY SINE Alu 0 350 1 21 57 0 0 chr21 18470115 18470150 -16437420 + AT_rich Low_complexity Low_complexity 1 35 0 721 114 189 0 chr21 18470719 18470851 -16436719 + LTR47A LTR ERVL 1 157 -295 729 222 92 0 chr21 18470853 18471006 -16436564 - FRAM SINE Alu -9 167 1 1095 168 40 5 chr21 18471070 18471272 -16436298 + LTR47A LTR ERVL 243 451 -1 261 0 0 0 chr21 18471388 18471417 -16436153 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2017 90 22 7 chr21 18471422 18471700 -16435870 - AluSx SINE Alu -30 282 1 410 105 0 0 chr21 18473482 18473539 -16434031 - Alu SINE Alu -243 67 11 1660 81 14 0 chr21 18473540 18473751 -16433819 + AluSg/x SINE Alu 74 287 -23 698 255 73 45 chr21 18474015 18474301 -16433269 + LTR21A LTR ERV1 193 486 -19 311 335 24 57 chr21 18474907 18475119 -16432451 + L1ME3 LINE L1 7 211 -5859 455 207 25 83 chr21 18475872 18475993 -16431577 - FLAM_A SINE Alu -23 119 6 584 192 0 0 chr21 18476008 18476107 -16431463 - AluJb SINE Alu -15 297 199 411 330 47 38 chr21 18476109 18476688 -16430882 + L1ME3 LINE L1 3657 4240 -1840 1532 193 10 29 chr21 18476691 18476997 -16430573 + AluJo SINE Alu 7 306 -6 1267 282 40 18 chr21 18477118 18477675 -16429895 + L1ME3 LINE L1 4416 4984 -1096 22 35 0 0 chr21 18477835 18477864 -16429706 + AT_rich Low_complexity Low_complexity 1 29 0 424 244 25 12 chr21 18477887 18478047 -16429523 + L1ME3 LINE L1 5251 5412 -684 28 0 0 0 chr21 18478122 18478150 -16429420 + AT_rich Low_complexity Low_complexity 1 28 0 1188 244 111 32 chr21 18478150 18478460 -16429110 + L1ME3 LINE L1 5408 5692 -404 501 114 13 0 chr21 18478460 18478539 -16429031 - MADE1 DNA Mariner 0 80 1 1188 244 111 32 chr21 18478539 18478762 -16428808 + L1ME3 LINE L1 5692 5982 -114 719 174 35 8 chr21 18479024 18479197 -16428373 + MSTA LTR MaLR 2 193 -264 345 128 0 0 chr21 18479218 18479265 -16428305 + MSTA LTR MaLR 381 427 -1 2245 142 28 17 chr21 18480783 18481143 -16426427 + THE1B LTR MaLR 1 364 0 2178 145 5 38 chr21 18481563 18481935 -16425635 - MLT2D LTR ERVL -54 360 1 474 146 0 0 chr21 18482759 18482841 -16424729 + (TA)n Simple_repeat Simple_repeat 1 82 0 261 219 0 0 chr21 18482842 18482906 -16424664 - L1MC4 LINE L1 -1339 6703 6640 280 263 0 40 chr21 18483033 18483132 -16424438 + (TATATG)n Simple_repeat Simple_repeat 2 96 0 2719 128 2 2 chr21 18483169 18483621 -16423949 + L1MA3 LINE L1 5233 5684 -621 3557 128 22 15 chr21 18483664 18484131 -16423439 + L1MA3 LINE L1 5681 6154 -151 2345 84 0 3 chr21 18484131 18484430 -16423140 + AluSq SINE Alu 1 298 -15 3557 128 22 15 chr21 18484430 18484547 -16423023 + L1MA3 LINE L1 6154 6269 -36 2583 199 28 4 chr21 18485864 18486372 -16421198 - MLT2B1 LTR ERVL 0 520 1 299 230 0 36 chr21 18486624 18486763 -16420807 + CT-rich Low_complexity Low_complexity 4 137 0 1843 151 3 20 chr21 18486992 18487284 -16420286 - AluJo SINE Alu -25 287 1 525 139 0 0 chr21 18487804 18487883 -16419687 - AluJb SINE Alu -25 287 209 252 184 0 0 chr21 18488730 18488779 -16418791 + (TG)n Simple_repeat Simple_repeat 2 50 0 626 222 8 0 chr21 18488793 18488919 -16418651 + MER20 DNA MER1_type 93 219 0 3684 128 14 0 chr21 18490816 18491386 -16416184 + L1PA14 LINE L1 5571 6148 -13 2211 114 3 0 chr21 18492457 18492754 -16414816 - AluSq SINE Alu -15 298 1 1939 141 7 3 chr21 18492860 18493157 -16414413 + AluSx SINE Alu 1 298 -14 973 224 17 42 chr21 18494721 18494776 -16412794 + MER46A DNA MER2_type 6 61 -2670 614 102 0 0 chr21 18494776 18494864 -16412706 - L1PA10 LINE L1 -11 6157 6070 973 224 17 42 chr21 18494864 18495045 -16412525 + MER46A DNA MER2_type 61 236 0 501 297 85 32 chr21 18495063 18495309 -16412261 - MIR SINE MIR -2 260 2 1246 122 109 0 chr21 18495429 18495658 -16411912 + L1MA2 LINE L1 6051 6304 0 29 0 0 0 chr21 18495658 18495687 -16411883 + AT_rich Low_complexity Low_complexity 1 29 0 1871 171 36 57 chr21 18495793 18496231 -16411339 + LTR3 LTR ERVK 1 429 0 478 97 0 0 chr21 18496232 18496294 -16411276 + LTR3b LTR ERVK 439 500 0 260 364 75 16 chr21 18496349 18496536 -16411034 - MIR3 SINE MIR -8 200 3 373 330 10 0 chr21 18496950 18497053 -16410517 - MIR SINE MIR -65 143 40 217 403 50 8 chr21 18497092 18497211 -16410359 - L2 LINE L2 -4 3268 3145 1803 178 22 22 chr21 18497492 18497857 -16409713 - MLT1A1 LTR MaLR 0 365 1 2333 92 0 3 chr21 18498212 18498515 -16409055 - AluSq SINE Alu -11 302 1 251 217 139 70 chr21 18499006 18499135 -16408435 + LTR50 LTR ERVL 326 463 -332 2235 107 3 16 chr21 18500897 18501214 -16406356 + AluSp SINE Alu 1 313 0 287 267 89 10 chr21 18501232 18501333 -16406237 - MIR3 SINE MIR 0 208 100 1296 196 19 70 chr21 18502129 18502445 -16405125 - AluJo SINE Alu -12 300 1 261 239 0 43 chr21 18503377 18503469 -16404101 + CT-rich Low_complexity Low_complexity 4 91 0 1275 214 71 0 chr21 18503810 18503924 -16403646 + AluJo SINE Alu 1 105 -197 213 94 0 0 chr21 18503924 18503956 -16403614 + (TAA)n Simple_repeat Simple_repeat 3 34 0 1275 214 71 0 chr21 18503956 18504122 -16403448 + AluJo SINE Alu 105 301 -1 198 200 114 29 chr21 18505246 18505316 -16402254 - MIR SINE MIR -12 250 175 2001 129 14 0 chr21 18506611 18506906 -16400664 + AluSx SINE Alu 1 299 -13 4267 78 2 0 chr21 18507904 18508468 -16399102 + L1PA7 LINE L1 5589 6153 -1 21 0 0 0 chr21 18509093 18509114 -16398456 + AT_rich Low_complexity Low_complexity 1 21 0 1838 88 0 0 chr21 18509173 18509401 -16398169 - AluSc SINE Alu -2 307 80 312 252 49 57 chr21 18509518 18509641 -16397929 - L1MC2 LINE L1 -11 6333 6212 239 372 39 0 chr21 18510362 18510464 -16397106 + L3 LINE CR1 1362 1467 -110 2146 109 7 13 chr21 18511014 18511316 -16396254 - AluSq SINE Alu -13 300 1 210 159 0 23 chr21 18512701 18512745 -16394825 + (CTGGGG)n Simple_repeat Simple_repeat 3 45 0 25 0 0 0 chr21 18514196 18514221 -16393349 + AT_rich Low_complexity Low_complexity 1 25 0 573 185 106 20 chr21 18515443 18515594 -16391976 + MLT1D LTR MaLR 1 164 -341 797 277 12 25 chr21 18515625 18515867 -16391703 + MLT1D LTR MaLR 267 505 0 22 0 0 0 chr21 18517393 18517415 -16390155 + AT_rich Low_complexity Low_complexity 1 22 0 623 162 20 7 chr21 18517634 18517782 -16389788 + GA-rich Low_complexity Low_complexity 3 152 0 264 232 115 11 chr21 18518158 18518260 -16389310 + MIR SINE MIR 75 186 -62 2060 94 4 0 chr21 18522401 18522667 -16384903 + AluSp SINE Alu 35 301 -12 1414 205 42 30 chr21 18524113 18524323 -16383247 - L1MCa LINE L1 -4509 1917 1711 864 121 0 0 chr21 18524323 18524455 -16383115 - L1PB1 LINE L1 -4 6147 6016 1414 205 42 30 chr21 18524455 18524823 -16382747 - L1MCa LINE L1 -4715 1711 1220 1945 125 48 0 chr21 18524887 18525176 -16382394 - AluSq SINE Alu -10 303 1 324 333 75 13 chr21 18525727 18525886 -16381684 + MIR SINE MIR 49 217 -45 207 162 0 0 chr21 18526053 18526090 -16381480 + (TATG)n Simple_repeat Simple_repeat 4 40 0 193 223 214 10 chr21 18526131 18526234 -16381336 + MIR SINE MIR 112 235 -27 335 256 16 62 chr21 18526584 18526713 -16380857 + MLT1J1 LTR MaLR 1 123 -323 495 73 0 0 chr21 18527207 18527275 -16380295 + (TG)n Simple_repeat Simple_repeat 1 68 0 1792 219 46 67 chr21 18529521 18530086 -16377484 - MLT2B3 LTR ERVL -1 553 1 1896 252 17 7 chr21 18531633 18532209 -16375361 - L1MEc LINE L1 -5230 1166 585 3855 223 50 7 chr21 18533323 18534266 -16373304 + L1MC3 LINE L1 6796 7778 -7 238 357 96 15 chr21 18534390 18534589 -16372981 - MIR SINE MIR 0 262 48 2507 57 0 3 chr21 18534612 18534913 -16372657 - AluY SINE Alu -11 300 1 1308 163 3 152 chr21 18536035 18536390 -16371180 + AluJo SINE Alu 1 302 0 2195 133 0 0 chr21 18538031 18538339 -16369231 + AluSq SINE Alu 1 308 -5 22 0 0 0 chr21 18540463 18540485 -16367085 + AT_rich Low_complexity Low_complexity 1 22 0 619 280 36 13 chr21 18542481 18542854 -16364716 + MSTD LTR MaLR 1 395 -1 3573 250 37 36 chr21 18543824 18545548 -16362022 - L1MCb LINE L1 -4835 1729 7 21 36 0 0 chr21 18546119 18546147 -16361423 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 18546408 18546436 -16361134 + AT_rich Low_complexity Low_complexity 1 28 0 339 361 53 26 chr21 18546801 18547180 -16360390 + L1ME3 LINE L1 4762 5150 -996 1078 287 54 52 chr21 18547270 18547964 -16359606 + L1ME3 LINE L1 5254 5957 -205 205 211 184 40 chr21 18548559 18548635 -16358935 + L2 LINE L2 3185 3271 -1 243 0 0 0 chr21 18552834 18552861 -16354709 + (T)n Simple_repeat Simple_repeat 1 27 0 324 313 71 0 chr21 18552985 18553084 -16354486 - L2 LINE L2 0 3313 3208 3006 190 20 29 chr21 18553800 18554463 -16353107 - L1 LINE L1 -1867 5698 5042 2509 230 65 30 chr21 18554660 18555553 -16352017 - L1 LINE L1 -3149 4416 3486 1498 245 67 42 chr21 18555631 18555805 -16351765 - L1 LINE L1 -4189 3376 3208 2488 206 19 27 chr21 18555805 18556324 -16351246 - MLT2B2 LTR ERVL 0 515 1 1498 245 67 42 chr21 18556324 18556745 -16350825 - L1 LINE L1 -4357 3208 2766 1493 286 33 40 chr21 18556854 18557403 -16350167 + HERVL40 LTR ERVL 940 1484 -4046 1684 213 15 0 chr21 18557403 18557741 -16349829 + MER2 DNA MER2_type 1 343 -1 325 242 42 32 chr21 18557854 18557949 -16349621 + HERVL40 LTR ERVL 2553 2648 -2882 1674 256 51 7 chr21 18558111 18558545 -16349025 + LTR40b LTR ERVL 5 457 -5 304 231 43 17 chr21 18559086 18559203 -16348367 + (TATATG)n Simple_repeat Simple_repeat 3 122 0 24 0 0 0 chr21 18560015 18560039 -16347531 + AT_rich Low_complexity Low_complexity 1 24 0 332 335 81 23 chr21 18560234 18560407 -16347163 + MIR3 SINE MIR 23 205 -3 22 0 0 0 chr21 18560996 18561018 -16346552 + AT_rich Low_complexity Low_complexity 1 22 0 204 246 98 0 chr21 18562494 18562555 -16345015 + MIR SINE MIR 41 107 -155 487 307 19 47 chr21 18563221 18563380 -16344190 - MIR SINE MIR 0 262 109 1986 164 0 0 chr21 18563380 18563692 -16343878 + AluSx SINE Alu 1 312 0 487 307 19 47 chr21 18563692 18563747 -16343823 - MIR SINE MIR -153 109 54 240 158 18 18 chr21 18564588 18564628 -16342942 - MLT2B1 LTR ERVL 0 520 478 525 14 40 0 chr21 18564628 18564702 -16342868 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 240 158 18 18 chr21 18564702 18564718 -16342852 - MLT2B1 LTR ERVL -41 479 464 420 143 0 0 chr21 18564728 18564798 -16342772 + (TG)n Simple_repeat Simple_repeat 1 70 0 1823 211 93 2 chr21 18564815 18565233 -16342337 - MLT2B1 LTR ERVL -60 460 5 563 251 85 89 chr21 18565512 18565747 -16341823 - MIR SINE MIR -27 235 2 2440 71 3 0 chr21 18565770 18566067 -16341503 + AluY SINE Alu 1 298 -13 2292 103 7 3 chr21 18569298 18569641 -16337929 - AluSq SINE Alu 0 344 1 330 395 42 44 chr21 18569642 18570047 -16337523 + L2 LINE L2 2825 3228 -44 2257 112 0 3 chr21 18570341 18570645 -16336925 - AluSx SINE Alu -9 303 1 1731 178 17 7 chr21 18571877 18572170 -16335400 - AluJo SINE Alu -14 298 3 424 297 159 0 chr21 18572400 18572538 -16335032 + MIR3 SINE MIR 42 201 -7 24 32 0 0 chr21 18573724 18573755 -16333815 + AT_rich Low_complexity Low_complexity 1 31 0 1703 161 7 4 chr21 18573760 18574040 -16333530 + Tigger1 DNA MER2_type 1 281 -2137 3274 166 50 45 chr21 18574040 18574860 -16332710 - LTR1 LTR ERV1 0 785 1 7044 110 15 30 chr21 18574860 18575953 -16331617 + Tigger1 DNA MER2_type 282 1358 -1060 255 245 43 32 chr21 18576077 18576171 -16331399 - MLT1K LTR MaLR -24 564 470 1962 119 0 69 chr21 18576238 18576556 -16331014 + AluSx SINE Alu 4 299 -13 2247 74 0 11 chr21 18576630 18576915 -16330655 + AluY SINE Alu 27 308 -3 287 155 104 80 chr21 18576919 18577046 -16330524 - MLT1L LTR MaLR -335 280 166 441 36 0 0 chr21 18578997 18579052 -16328518 + (TC)n Simple_repeat Simple_repeat 2 56 0 441 276 114 55 chr21 18580328 18580748 -16326822 + MER65A LTR ERV1 1 445 0 28 61 0 0 chr21 18581697 18581746 -16325824 + AT_rich Low_complexity Low_complexity 1 49 0 351 0 0 0 chr21 18581856 18581895 -16325675 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1263 188 47 32 chr21 18581898 18582175 -16325395 - AluJo SINE Alu -31 281 1 192 40 0 0 chr21 18582285 18582310 -16325260 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 473 127 0 0 chr21 18582588 18582659 -16324911 - MADE1 DNA Mariner -1 79 9 2145 134 13 46 chr21 18583150 18583538 -16324032 + THE1C LTR MaLR 1 375 0 449 338 33 55 chr21 18583859 18584131 -16323439 + L2 LINE L2 2199 2464 -850 902 268 28 0 chr21 18584221 18584434 -16323136 - MER20 DNA MER1_type 0 219 1 765 101 34 28 chr21 18584558 18584736 -16322834 + CT-rich Low_complexity Low_complexity 2 180 0 326 368 101 25 chr21 18584763 18585081 -16322489 + L2 LINE L2 2636 2977 -337 2073 107 3 3 chr21 18587684 18587973 -16319597 + AluSx SINE Alu 5 293 -19 22 0 0 0 chr21 18588264 18588286 -16319284 + AT_rich Low_complexity Low_complexity 1 22 0 602 161 0 0 chr21 18589597 18589709 -16317861 + L1PB4 LINE L1 6045 6156 0 21 82 0 0 chr21 18590463 18590512 -16317058 + AT_rich Low_complexity Low_complexity 1 49 0 5240 163 27 3 chr21 18591928 18593697 -16313873 + L1PB4 LINE L1 4342 6153 -3 766 226 57 53 chr21 18593889 18594154 -16313416 - L1MD2 LINE L1 -31 6328 6063 913 153 27 7 chr21 18594172 18594322 -16313248 - FRAM SINE Alu -12 164 12 27 62 0 0 chr21 18594381 18594429 -16313141 + AT_rich Low_complexity Low_complexity 1 48 0 1903 183 36 29 chr21 18594609 18595051 -16312519 + L1MA9 LINE L1 5848 6292 -20 987 249 45 9 chr21 18595340 18595670 -16311900 + LTR37A LTR ERV1 79 420 -6 228 259 0 17 chr21 18596747 18596805 -16310765 + GA-rich Low_complexity Low_complexity 4 60 0 2217 111 0 3 chr21 18597416 18597714 -16309856 - AluSg SINE Alu -13 297 1 279 0 0 0 chr21 18597725 18597756 -16309814 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 13428 40 1 1 chr21 18597759 18600157 -16307413 - L1PA5 LINE L1 -13 6141 3744 196 320 0 0 chr21 18600782 18600832 -16306738 - L3 LINE CR1 -30 1547 1498 215 31 31 0 chr21 18601027 18601059 -16306511 + (CA)n Simple_repeat Simple_repeat 1 33 0 553 229 13 0 chr21 18604464 18604692 -16302878 + CT-rich Low_complexity Low_complexity 1 231 0 2546 64 0 6 chr21 18604941 18605254 -16302316 - AluY SINE Alu 0 311 1 2173 100 0 0 chr21 18605669 18605968 -16301602 + AluSg SINE Alu 1 299 0 1939 139 12 9 chr21 18606157 18606494 -16301076 - L1MA4 LINE L1 -8 6292 5955 32 0 0 0 chr21 18606697 18606729 -16300841 + AT_rich Low_complexity Low_complexity 1 32 0 781 253 36 44 chr21 18606796 18607021 -16300549 - MIR SINE MIR -34 228 6 365 277 59 0 chr21 18607236 18607337 -16300233 + MIR SINE MIR 7 113 -149 1280 204 0 43 chr21 18607554 18607833 -16299737 - AluJo SINE Alu -6 306 40 2877 234 66 22 chr21 18607833 18608236 -16299334 - L1ME1 LINE L1 -57 6109 5725 1698 168 51 38 chr21 18608236 18608606 -16298964 + THE1C LTR MaLR 1 375 0 9504 133 17 35 chr21 18608609 18610215 -16297355 + THE1C-int LTR MaLR 4 1580 0 1793 158 55 33 chr21 18610215 18610582 -16296988 + THE1C LTR MaLR 1 375 0 2877 234 66 22 chr21 18610582 18611110 -16296460 - L1ME1 LINE L1 -441 5725 5136 2927 67 3 0 chr21 18611130 18611502 -16296068 + THE1B-int LTR MaLR 1208 1580 0 1800 174 36 28 chr21 18611502 18611863 -16295707 + THE1B LTR MaLR 1 364 0 361 85 0 0 chr21 18613330 18613377 -16294193 - MLT2C2 LTR ERVL -1 413 367 224 135 0 19 chr21 18613377 18613429 -16294141 + (TG)n Simple_repeat Simple_repeat 1 51 0 2051 169 34 36 chr21 18613434 18613847 -16293723 - MLT2C2 LTR ERVL -48 416 5 195 241 161 62 chr21 18614729 18614841 -16292729 - MIR SINE MIR -12 250 128 21 0 0 0 chr21 18615085 18615106 -16292464 + AT_rich Low_complexity Low_complexity 1 21 0 271 344 104 6 chr21 18615684 18615847 -16291723 - MIR SINE MIR -58 204 26 245 227 45 0 chr21 18616620 18616686 -16290884 + GA-rich Low_complexity Low_complexity 2 70 0 1272 207 115 46 chr21 18617219 18617653 -16289917 - MLT1C LTR MaLR 0 467 4 192 97 0 0 chr21 18618784 18618815 -16288755 + (A)n Simple_repeat Simple_repeat 1 31 0 219 163 61 41 chr21 18619095 18619144 -16288426 - MER5A DNA MER1_type 0 189 140 2226 116 3 0 chr21 18620047 18620348 -16287222 + AluSq SINE Alu 6 307 -6 3792 163 29 29 chr21 18620753 18621471 -16286099 + LTR1 LTR ERV1 68 785 0 252 211 0 0 chr21 18621781 18621833 -16285737 - L2 LINE L2 -1 3312 3261 206 241 0 0 chr21 18622427 18622481 -16285089 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 701 292 118 50 chr21 18622679 18623120 -16284450 - Charlie8 DNA MER1_type -1872 545 75 2538 68 0 0 chr21 18624336 18624647 -16282923 - AluY SINE Alu 0 311 1 489 182 39 61 chr21 18624901 18625082 -16282488 + MER69 DNA AcHobo 2115 2291 -235 231 224 17 0 chr21 18625561 18625619 -16281951 + T-rich Low_complexity Low_complexity 3 61 0 2302 96 3 6 chr21 18628200 18628512 -16279058 - AluSx SINE Alu -1 311 1 252 284 0 0 chr21 18629043 18629138 -16278432 + (TA)n Simple_repeat Simple_repeat 1 95 0 332 361 74 9 chr21 18629354 18629584 -16277986 + L1M4c LINE L1 1076 1320 -5108 332 294 82 27 chr21 18629723 18629869 -16277701 + L1M4c LINE L1 1345 1498 -4928 25 31 0 0 chr21 18631056 18631088 -16276482 + AT_rich Low_complexity Low_complexity 1 32 0 221 260 0 0 chr21 18631373 18631432 -16276138 + (TATG)n Simple_repeat Simple_repeat 1 59 0 331 303 38 23 chr21 18632055 18632319 -16275251 + L1M4c LINE L1 1399 1666 -4760 23 68 0 0 chr21 18633029 18633073 -16274497 + AT_rich Low_complexity Low_complexity 1 44 0 933 249 62 44 chr21 18633127 18633513 -16274057 - L1M4 LINE L1 -2919 3227 2835 2156 126 3 0 chr21 18634115 18634425 -16273145 - AluSq SINE Alu -2 311 1 1006 166 12 0 chr21 18635088 18635251 -16272319 - AluJ SINE Alu -10 302 138 2239 133 30 25 chr21 18635251 18635613 -16271957 + THE1B LTR MaLR 1 364 0 203 0 0 36 chr21 18635633 18635661 -16271909 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 873 116 8 0 chr21 18635662 18635783 -16271787 - AluJ SINE Alu -178 134 13 23 0 0 0 chr21 18637172 18637195 -16270375 + AT_rich Low_complexity Low_complexity 1 23 0 203 355 27 45 chr21 18637402 18637512 -16270058 - L2 LINE L2 -215 3057 2950 180 0 0 0 chr21 18638260 18638280 -16269290 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 23 68 0 0 chr21 18638404 18638448 -16269122 + AT_rich Low_complexity Low_complexity 1 44 0 430 268 54 12 chr21 18638664 18638832 -16268738 + L1ME2 LINE L1 4759 4933 -1213 10533 160 40 4 chr21 18638834 18640821 -16266749 + L1PA16 LINE L1 1113 3163 -3686 393 128 27 32 chr21 18640821 18640915 -16266655 + AluS SINE Alu 1 57 -251 2683 240 39 35 chr21 18640916 18641824 -16265746 + L1M4c LINE L1 2729 3639 -2787 7192 227 27 11 chr21 18641829 18644040 -16263530 + L1PA16 LINE L1 4132 6383 -486 186 43 0 0 chr21 18644040 18644063 -16263507 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7192 227 27 11 chr21 18644063 18644135 -16263435 + L1PA16 LINE L1 6383 6452 -417 1057 152 0 0 chr21 18644149 18644314 -16263256 + MER41B LTR ERV1 471 635 0 4071 128 20 25 chr21 18644407 18645058 -16262512 + MER41B-int LTR ERV1 1 648 -5298 13470 129 20 19 chr21 18645028 18645460 -16262110 + MER41A-int LTR ERV1 2186 2616 -3330 2263 103 0 0 chr21 18645460 18645751 -16261819 - AluY SINE Alu -20 291 1 13470 129 20 19 chr21 18645751 18648856 -16258714 + MER41A-int LTR ERV1 2616 5946 0 3856 102 11 0 chr21 18648857 18649394 -16258176 + MER41A LTR ERV1 4 546 -8 2235 166 15 5 chr21 18649394 18649803 -16257767 + L1PA16 LINE L1 6446 6858 -11 2073 251 66 23 chr21 18649927 18650701 -16256869 + L1ME2 LINE L1 5338 6144 -20 22 0 0 0 chr21 18650709 18650731 -16256839 + AT_rich Low_complexity Low_complexity 1 22 0 2785 0 0 3 chr21 18650943 18651245 -16256325 - AluY SINE Alu -10 301 1 231 359 22 11 chr21 18651286 18651378 -16256192 + L2 LINE L2 2986 3078 -194 21 36 0 0 chr21 18651524 18651552 -16256018 + AT_rich Low_complexity Low_complexity 1 28 0 925 251 80 47 chr21 18652431 18652730 -16254840 + MLT1D LTR MaLR 3 311 -194 2486 133 17 8 chr21 18652736 18653214 -16254356 - MER1A DNA MER1_type -6 523 2 972 179 15 30 chr21 18653215 18653416 -16254154 + MLT1D LTR MaLR 304 501 -4 231 261 0 0 chr21 18653792 18653838 -16253732 + polypurine Low_complexity Low_complexity 1 46 0 21 0 0 0 chr21 18656342 18656363 -16251207 + AT_rich Low_complexity Low_complexity 1 21 0 356 386 51 0 chr21 18656887 18657063 -16250507 + LTR16B LTR ERVL 1 185 -279 2117 138 135 0 chr21 18657282 18657659 -16249911 + MSTA LTR MaLR 1 428 0 410 343 24 6 chr21 18657919 18658085 -16249485 - L1M4c LINE L1 -5025 1359 1191 28 0 0 0 chr21 18658967 18658995 -16248575 + AT_rich Low_complexity Low_complexity 1 28 0 227 188 0 31 chr21 18659239 18659303 -16248267 + GA-rich Low_complexity Low_complexity 3 64 0 24 0 0 0 chr21 18661183 18661207 -16246363 + AT_rich Low_complexity Low_complexity 1 24 0 381 307 50 43 chr21 18661837 18662114 -16245456 - LTR16C LTR ERVL -17 474 196 799 201 18 18 chr21 18664558 18664727 -16242843 + AluJb SINE Alu 134 302 -10 23 78 0 0 chr21 18664888 18664939 -16242631 + AT_rich Low_complexity Low_complexity 1 51 0 24 32 0 0 chr21 18665677 18665708 -16241862 + AT_rich Low_complexity Low_complexity 1 31 0 3158 122 4 4 chr21 18665708 18666193 -16241377 - L1PA14 LINE L1 -9 6152 5668 246 329 59 0 chr21 18668645 18668730 -16238840 - L3 LINE CR1 -2 1575 1486 264 91 0 0 chr21 18669817 18669861 -16237709 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2224 89 0 0 chr21 18669863 18670143 -16237427 - AluSg SINE Alu -30 280 1 1893 156 11 0 chr21 18671301 18671606 -16235964 + AluSx SINE Alu 1 308 0 234 259 0 0 chr21 18671816 18671870 -16235700 - L2 LINE L2 -2 3311 3258 834 283 75 84 chr21 18672080 18672287 -16235283 - LTR16B LTR ERVL 0 464 257 2529 59 0 0 chr21 18672287 18672593 -16234977 + AluY SINE Alu 4 309 -2 834 283 75 84 chr21 18672593 18672851 -16234719 - LTR16B LTR ERVL -207 257 3 21 0 0 0 chr21 18673361 18673382 -16234188 + AT_rich Low_complexity Low_complexity 1 21 0 1535 203 34 39 chr21 18673959 18674314 -16233256 + MLT1A1 LTR MaLR 13 365 0 901 229 13 43 chr21 18675581 18675812 -16231758 + MER58A DNA MER1_type 1 224 0 498 298 69 16 chr21 18676145 18676333 -16231237 - MIR SINE MIR -50 212 15 474 333 37 42 chr21 18676747 18676936 -16230634 + MIR3 SINE MIR 4 191 -17 1556 219 103 49 chr21 18677642 18678135 -16229435 - MLT2B1 LTR ERVL 0 520 1 259 299 23 23 chr21 18678177 18678264 -16229306 + L2 LINE L2 3182 3268 -4 874 197 49 25 chr21 18679009 18679212 -16228358 + MER20 DNA MER1_type 1 208 -11 432 0 0 0 chr21 18679564 18679612 -16227958 + (TC)n Simple_repeat Simple_repeat 2 49 0 318 95 0 0 chr21 18679624 18679666 -16227904 + MLT2C2 LTR ERVL 423 464 0 191 36 36 0 chr21 18682033 18682061 -16225509 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 376 127 67 0 chr21 18682327 18682492 -16225078 + (TA)n Simple_repeat Simple_repeat 2 177 0 244 313 20 95 chr21 18682605 18682693 -16224877 - L2 LINE L2 0 3272 3198 1903 119 35 0 chr21 18682693 18682979 -16224591 + AluSg SINE Alu 3 298 -12 244 313 20 95 chr21 18682979 18683037 -16224533 - L2 LINE L2 -74 3198 3137 203 277 0 0 chr21 18683396 18683443 -16224127 + (CTATT)n Simple_repeat Simple_repeat 4 50 0 1294 162 35 63 chr21 18683991 18684275 -16223295 - AluJo SINE Alu -14 298 23 1719 187 0 3 chr21 18684993 18685276 -16222294 + AluJb SINE Alu 1 282 -30 2007 144 83 44 chr21 18685734 18686144 -16221426 - MSTB LTR MaLR 0 426 1 2928 181 28 13 chr21 18686144 18686685 -16220885 - MSTB-int LTR MaLR 0 1651 1103 2012 149 70 43 chr21 18686687 18687102 -16220468 - MSTB LTR MaLR 0 426 1 2304 96 0 0 chr21 18687485 18687778 -16219792 - AluSg SINE Alu -17 293 1 2351 55 0 70 chr21 18688155 18688485 -16219085 + AluY SINE Alu 1 307 -4 249 244 116 23 chr21 18688490 18688576 -16218994 - MIR SINE MIR -32 230 137 2299 63 0 27 chr21 18690476 18690777 -16216793 - AluY SINE Alu -18 293 1 185 336 15 95 chr21 18692017 18692154 -16215416 + L2 LINE L2 3180 3305 -8 2554 42 3 10 chr21 18693324 18693635 -16213935 - AluY SINE Alu -2 309 1 450 283 92 0 chr21 18695144 18695264 -16212306 + MIR SINE MIR 23 153 -109 351 0 0 0 chr21 18696622 18696661 -16210909 + (TG)n Simple_repeat Simple_repeat 2 40 0 536 262 99 42 chr21 18699471 18699662 -16207908 - MIR SINE MIR -48 214 13 478 239 78 28 chr21 18702076 18702256 -16205314 + MER53 DNA DNA 1 189 0 888 277 29 12 chr21 18702832 18703074 -16204496 - MIR SINE MIR -3 259 14 554 286 21 21 chr21 18704376 18704568 -16203002 - L2 LINE L2 -4 3309 3118 192 222 0 0 chr21 18704600 18704636 -16202934 - L2 LINE L2 -259 3054 3019 3874 72 4 6 chr21 18704694 18705222 -16202348 - L1PA8 LINE L1 -2 6170 5644 2893 62 7 3 chr21 18705222 18705638 -16201932 + L1PA8 LINE L1 5216 5633 -539 23 33 0 0 chr21 18706100 18706130 -16201440 + AT_rich Low_complexity Low_complexity 1 30 0 442 158 74 0 chr21 18707877 18707972 -16199598 + L1MA5A LINE L1 6196 6297 0 188 200 18 0 chr21 18708026 18708081 -16199489 + CT-rich Low_complexity Low_complexity 1 56 0 2624 130 20 2 chr21 18708696 18709134 -16198436 - L1MA2 LINE L1 0 6304 5859 886 191 0 0 chr21 18709134 18709307 -16198263 + L1 LINE L1 5065 5237 -909 26 0 0 0 chr21 18711927 18711953 -16195617 + AT_rich Low_complexity Low_complexity 1 26 0 1159 175 56 0 chr21 18711953 18712350 -16195220 - L1MA4A LINE L1 -5 6298 5854 279 133 0 0 chr21 18714075 18714120 -16193450 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 219 77 77 15 chr21 18714203 18714268 -16193302 + (TA)n Simple_repeat Simple_repeat 2 70 0 59 70 0 0 chr21 18714268 18714383 -16193187 + AT_rich Low_complexity Low_complexity 1 115 0 356 294 17 17 chr21 18714387 18714564 -16193006 + (CATATA)n Simple_repeat Simple_repeat 4 180 0 2394 212 36 2 chr21 18714958 18715435 -16192135 + MLT2B1 LTR ERVL 1 493 -27 1878 164 108 8 chr21 18715435 18715824 -16191746 + MSTA LTR MaLR 1 428 0 7881 160 9 45 chr21 18715824 18717289 -16190281 + MSTA-int LTR MaLR 1 1412 -168 2125 133 0 0 chr21 18717805 18718098 -16189472 - AluSq SINE Alu -20 293 1 1447 154 48 29 chr21 18718624 18718686 -16188884 + AluJb SINE Alu 5 64 -248 2745 85 3 0 chr21 18718686 18719040 -16188530 - THE1A LTR MaLR 0 355 1 1447 154 48 29 chr21 18719040 18719249 -16188321 + AluJb SINE Alu 64 281 -31 270 56 0 0 chr21 18719252 18719288 -16188282 + (CA)n Simple_repeat Simple_repeat 2 37 0 208 103 0 51 chr21 18719967 18720006 -16187564 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 37 23 0 0 chr21 18720460 18720504 -16187066 + AT_rich Low_complexity Low_complexity 1 44 0 2415 64 0 10 chr21 18722999 18723310 -16184260 - AluY SINE Alu -3 308 1 22 35 0 0 chr21 18723419 18723448 -16184122 + AT_rich Low_complexity Low_complexity 1 29 0 189 308 0 0 chr21 18723912 18723964 -16183606 + L2 LINE L2 3262 3313 0 2476 71 0 0 chr21 18724568 18724879 -16182691 + AluY SINE Alu 1 311 0 1986 136 6 19 chr21 18724923 18725239 -16182331 - AluSx SINE Alu 0 312 1 29 70 0 0 chr21 18725322 18725379 -16182191 + AT_rich Low_complexity Low_complexity 1 57 0 753 274 34 14 chr21 18725434 18725730 -16181840 - L1ME LINE L1 -607 5555 5254 191 140 20 0 chr21 18727374 18727424 -16180146 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 567 162 10 0 chr21 18727709 18727808 -16179762 - AluJ/FLAM SINE Alu -212 100 1 456 19 0 0 chr21 18728352 18728405 -16179165 + (TG)n Simple_repeat Simple_repeat 1 53 0 833 302 20 7 chr21 18728592 18729074 -16178496 - L1ME LINE L1 -601 5561 5073 2327 85 0 0 chr21 18730532 18730827 -16176743 + AluY SINE Alu 1 295 -16 2656 145 7 23 chr21 18731133 18731574 -16175996 + Tigger2a DNA MER2_type 1 434 0 246 298 11 0 chr21 18731590 18731684 -16175886 + (TA)n Simple_repeat Simple_repeat 2 96 0 2210 80 0 3 chr21 18733321 18733609 -16173961 - AluY SINE Alu -8 303 17 913 122 28 13 chr21 18733760 18733933 -16173637 + L1MA1 LINE L1 6040 6216 -87 26 74 0 0 chr21 18734817 18734871 -16172699 + AT_rich Low_complexity Low_complexity 1 54 0 250 270 95 54 chr21 18735855 18736003 -16171567 + MIR3 SINE MIR 40 193 -15 12433 117 2 2 chr21 18736030 18737924 -16169646 - L1P LINE L1 -1179 4967 3073 6690 86 2 5 chr21 18737925 18739054 -16168516 + L1PA8 LINE L1 5037 6171 -1 22 80 0 0 chr21 18739299 18739349 -16168221 + AT_rich Low_complexity Low_complexity 1 50 0 1821 145 10 14 chr21 18739764 18740054 -16167516 + AluSx SINE Alu 1 289 -23 1709 156 12 41 chr21 18741829 18742149 -16165421 + AluSx SINE Alu 1 311 -1 648 235 40 0 chr21 18742494 18742694 -16164876 + L1M4 LINE L1 4627 4834 -1312 372 265 77 39 chr21 18742696 18742877 -16164693 + L1M4 LINE L1 4856 5043 -1103 281 114 68 114 chr21 18743071 18743159 -16164411 + L1M4 LINE L1 5353 5436 -742 1726 131 22 29 chr21 18743168 18743442 -16164128 + AluSg SINE Alu 3 274 -36 3011 189 9 6 chr21 18745675 18746210 -16161360 - MER44D DNA MER2_type -8 597 6 2134 122 72 17 chr21 18746267 18746612 -16160958 - THE1B LTR MaLR 0 364 1 2663 113 0 0 chr21 18746689 18747053 -16160517 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr21 18748186 18748207 -16159363 + AT_rich Low_complexity Low_complexity 1 21 0 261 196 0 0 chr21 18748978 18749034 -16158536 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 886 260 14 5 chr21 18749608 18749827 -16157743 + MER58A DNA MER1_type 3 223 -1 2433 71 0 3 chr21 18750628 18750936 -16156634 + AluY SINE Alu 1 307 -4 264 217 84 12 chr21 18751380 18751463 -16156107 - L1MC4 LINE L1 -1758 6284 6196 3219 262 68 76 chr21 18751464 18752523 -16155047 - L1MEc LINE L1 -1743 4472 3406 2047 139 24 0 chr21 18752523 18752862 -16154708 + L1PA14 LINE L1 5815 6161 0 3219 262 68 76 chr21 18752862 18753587 -16153983 - L1MEc LINE L1 -2809 3406 2677 2537 125 0 5 chr21 18753587 18753964 -16153606 - THE1C LTR MaLR 0 375 1 3219 262 68 76 chr21 18753964 18755072 -16152498 - L1MEc LINE L1 -3538 2677 1633 1496 250 7 3 chr21 18755093 18755397 -16152173 + MER70A LTR ERVL 124 428 -44 785 246 53 0 chr21 18755579 18755750 -16151820 + MER63A DNA MER1_type 31 210 0 2457 66 16 0 chr21 18757029 18757332 -16150238 - AluY SINE Alu -3 308 1 21 0 0 0 chr21 18758159 18758180 -16149390 + AT_rich Low_complexity Low_complexity 1 21 0 1734 165 104 53 chr21 18759247 18759459 -16148111 - Tigger2a DNA MER2_type -2274 434 234 2354 53 0 13 chr21 18759459 18759759 -16147811 + AluY SINE Alu 16 311 0 1734 165 104 53 chr21 18759759 18759959 -16147611 - Tigger2a DNA MER2_type -2474 234 1 219 69 0 0 chr21 18760801 18760830 -16146740 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1904 72 4 19 chr21 18760842 18761104 -16146466 - AluY SINE Alu -17 294 37 236 407 57 16 chr21 18761229 18761423 -16146147 - L2 LINE L2 -402 2912 2711 207 216 0 0 chr21 18761482 18761519 -16146051 - L2 LINE L2 -688 2626 2590 349 182 30 121 chr21 18761687 18761819 -16145751 - L1MA9 LINE L1 -9 6303 6184 2862 188 112 31 chr21 18761824 18762589 -16144981 - L1MA9 LINE L1 -232 6080 5254 384 27 1 14 chr21 18762585 18762651 -16144919 - L1M3 LINE L1 -373 5808 5743 2129 115 0 0 chr21 18763177 18763511 -16144059 - AluSc SINE Alu 0 335 2 1480 227 45 45 chr21 18765688 18766155 -16141415 + MLT1C LTR MaLR 1 467 0 21 0 0 0 chr21 18766246 18766267 -16141303 + AT_rich Low_complexity Low_complexity 1 21 0 273 203 0 17 chr21 18766560 18766619 -16140951 - L2 LINE L2 -1 3312 3255 2415 75 0 0 chr21 18768105 18768400 -16139170 + AluY SINE Alu 1 295 -16 21 0 0 0 chr21 18769569 18769590 -16137980 + AT_rich Low_complexity Low_complexity 1 21 0 711 168 38 32 chr21 18769760 18769945 -16137625 + L1MA7 LINE L1 6106 6291 0 2159 139 0 0 chr21 18770520 18770830 -16136740 - AluSx SINE Alu -2 310 1 834 118 24 128 chr21 18772722 18772933 -16134637 - L1MA2 LINE L1 -1 6303 6115 2934 107 33 61 chr21 18772950 18773491 -16134079 - L1MA2 LINE L1 -142 7581 7056 814 132 0 0 chr21 18773567 18773688 -16133882 - L1MA2 LINE L1 -663 7060 6940 6071 183 27 6 chr21 18773689 18774967 -16132603 - L1MA2 LINE L1 -798 6767 5463 2231 92 3 0 chr21 18774975 18775268 -16132302 - AluSp SINE Alu -19 294 1 7441 205 32 4 chr21 18775273 18777386 -16130184 - L1MA2 LINE L1 -2191 5374 3200 15038 219 20 12 chr21 18777435 18781731 -16125839 - L1PA15 LINE L1 -11 6805 2544 2142 97 14 3 chr21 18781731 18782019 -16125551 + AluY SINE Alu 1 291 -20 15038 219 20 12 chr21 18782019 18782870 -16124700 - L1PA15 LINE L1 -4272 2544 1600 513 0 0 0 chr21 18782870 18782927 -16124643 + (TG)n Simple_repeat Simple_repeat 2 58 0 15038 219 20 12 chr21 18782927 18783293 -16124277 - L1PA15 LINE L1 -5216 1600 1238 21 57 0 0 chr21 18783375 18783410 -16124160 + AT_rich Low_complexity Low_complexity 1 35 0 266 130 19 19 chr21 18783711 18783765 -16123805 + L1MC3 LINE L1 5419 5472 -2570 2466 169 51 14 chr21 18783819 18784327 -16123243 + L1MC3 LINE L1 5420 5946 -1839 850 317 54 31 chr21 18784770 18785567 -16122003 + L1MC4a LINE L1 3844 4658 -1488 199 70 23 23 chr21 18785834 18785877 -16121693 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1402 157 91 0 chr21 18785889 18786131 -16121439 - AluSq SINE Alu -49 264 1 1096 228 16 4 chr21 18786587 18786841 -16120729 + L1MC4a LINE L1 5317 5573 -2235 614 294 78 38 chr21 18786841 18787161 -16120409 + MLT1D LTR MaLR 2 334 -171 474 193 42 76 chr21 18787169 18787288 -16120282 + MLT1E2 LTR MaLR 510 626 0 1024 284 34 39 chr21 18787331 18787796 -16119774 + L1MC4a LINE L1 5621 6083 -1725 937 243 51 75 chr21 18787798 18788213 -16119357 - L1ME3 LINE L1 -188 5974 5570 2175 117 3 3 chr21 18788213 18788522 -16119048 - AluSx SINE Alu -1 311 3 376 322 35 45 chr21 18788532 18788821 -16118749 - L1M1 LINE L1 -726 5576 5291 311 273 13 0 chr21 18788958 18789035 -16118535 - L1ME3 LINE L1 -1444 4702 4625 1369 154 88 37 chr21 18789036 18789353 -16118217 + THE1C LTR MaLR 3 399 -29 2061 129 3 6 chr21 18789353 18789679 -16117891 + MSTA-int LTR MaLR 1327 1651 0 2376 128 25 48 chr21 18789679 18790117 -16117453 + MSTA LTR MaLR 1 428 0 341 282 8 30 chr21 18790705 18790836 -16116734 + GA-rich Low_complexity Low_complexity 2 129 0 422 314 75 13 chr21 18792194 18792353 -16115217 - MIR3 SINE MIR -2 206 38 381 93 0 0 chr21 18792515 18792569 -16115001 + (TA)n Simple_repeat Simple_repeat 1 54 0 2913 64 3 0 chr21 18792570 18792943 -16114627 - L1PA7 LINE L1 -18 6136 5763 2013 90 0 14 chr21 18794306 18794583 -16112987 + AluSq SINE Alu 2 274 -39 21 36 0 0 chr21 18795929 18795957 -16111613 + AT_rich Low_complexity Low_complexity 1 28 0 2392 204 79 58 chr21 18799002 18799771 -16107799 + LTR1 LTR ERV1 1 785 0 1758 148 0 72 chr21 18800574 18800905 -16106665 - AluSx SINE Alu -5 307 1 379 128 45 18 chr21 18800986 18801440 -16106130 + (TA)n Simple_repeat Simple_repeat 1 466 0 875 293 97 79 chr21 18801625 18802749 -16104821 - L2 LINE L2 -1 3312 2178 180 219 0 0 chr21 18803159 18803200 -16104370 + (CA)n Simple_repeat Simple_repeat 2 42 0 437 221 64 58 chr21 18804213 18804385 -16103185 + L2 LINE L2 3134 3306 -7 1789 160 27 0 chr21 18804385 18804685 -16102885 + AluSx SINE Alu 1 308 -4 186 171 0 0 chr21 18804696 18804737 -16102833 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 32 67 0 0 chr21 18805523 18805583 -16101987 + AT_rich Low_complexity Low_complexity 1 60 0 359 316 58 7 chr21 18806261 18806400 -16101170 - MIR SINE MIR -71 191 46 26 0 0 0 chr21 18806996 18807022 -16100548 + AT_rich Low_complexity Low_complexity 1 26 0 1687 164 4 4 chr21 18807125 18807434 -16100136 - AluSx SINE Alu 0 309 1 1349 182 72 48 chr21 18808303 18808737 -16098833 + THE1C LTR MaLR 1 426 0 218 356 102 48 chr21 18808898 18809786 -16097784 - L2 LINE L2 -1293 2021 1086 186 43 0 0 chr21 18810809 18810832 -16096738 + (CAT)n Simple_repeat Simple_repeat 2 24 0 992 148 0 13 chr21 18811948 18812141 -16095429 - AluSg/x SINE Alu 0 323 133 1312 240 91 8 chr21 18813873 18814236 -16093334 - MSTD LTR MaLR -3 393 1 626 258 58 38 chr21 18814692 18815146 -16092424 + L1ME1 LINE L1 747 1181 -5037 1940 229 19 41 chr21 18815257 18815725 -16091845 - MLT2B1 LTR ERVL -58 462 5 203 0 37 0 chr21 18815848 18815875 -16091695 + (CA)n Simple_repeat Simple_repeat 2 29 0 386 301 75 32 chr21 18816070 18816256 -16091314 + L1ME1 LINE L1 2017 2210 -4186 1049 254 72 9 chr21 18816301 18816636 -16090934 + L1ME1 LINE L1 5336 5691 -544 256 274 20 0 chr21 18816698 18816800 -16090770 + L1ME1 LINE L1 5823 5926 -313 436 269 46 54 chr21 18816811 18817071 -16090499 + L1ME1 LINE L1 5973 6230 -5 316 200 50 10 chr21 18817113 18817213 -16090357 + (TA)n Simple_repeat Simple_repeat 2 105 0 754 229 30 0 chr21 18817254 18817450 -16090120 + AluJo SINE Alu 113 313 0 1246 124 31 0 chr21 18817711 18817904 -16089666 - L1PA13 LINE L1 -4 6159 5961 21 0 0 0 chr21 18817994 18818015 -16089555 + AT_rich Low_complexity Low_complexity 1 21 0 900 235 25 13 chr21 18818341 18818579 -16088991 - L1ME3 LINE L1 -1 6161 5921 243 125 0 0 chr21 18819981 18820021 -16087549 + (TC)n Simple_repeat Simple_repeat 2 41 0 306 50 0 0 chr21 18820023 18820063 -16087507 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 70 0 0 chr21 18821256 18821299 -16086271 + AT_rich Low_complexity Low_complexity 1 43 0 698 310 87 52 chr21 18821967 18822451 -16085119 - L2 LINE L2 -1 3312 2812 424 179 0 0 chr21 18823293 18823371 -16084199 - L1PA16 LINE L1 -5 6161 6084 3412 151 12 5 chr21 18823381 18823958 -16083612 - L1PA16 LINE L1 -132 6034 5454 284 177 62 10 chr21 18823976 18824072 -16083498 + (TA)n Simple_repeat Simple_repeat 1 101 0 3821 230 37 5 chr21 18824075 18825028 -16082542 - L1PA16 LINE L1 -762 5384 4402 1206 255 47 90 chr21 18825107 18825597 -16081973 - MLT1E LTR MaLR -123 470 2 834 211 0 52 chr21 18826034 18826266 -16081304 + L1MA10 LINE L1 6111 6330 -4 22 0 0 0 chr21 18826298 18826320 -16081250 + AT_rich Low_complexity Low_complexity 1 22 0 219 263 18 0 chr21 18827461 18827518 -16080052 + MIR SINE MIR 92 149 -113 2214 80 50 10 chr21 18827530 18827829 -16079741 - AluY SINE Alu 0 311 1 1898 116 33 18 chr21 18827831 18828107 -16079463 - AluSx SINE Alu -11 301 22 181 86 0 114 chr21 18829094 18829129 -16078441 - L2 LINE L2 -1641 1673 1643 687 233 54 18 chr21 18829728 18829951 -16077619 - L1MD3 LINE L1 -10 7985 7755 733 242 87 10 chr21 18829990 18830238 -16077332 - L1MD3 LINE L1 -213 7782 7423 1601 113 58 35 chr21 18830612 18830897 -16076673 + AluSc SINE Alu 17 307 0 2683 288 39 19 chr21 18832868 18833615 -16073955 + L1M4b LINE L1 86 855 -6004 2208 122 36 30 chr21 18833615 18833977 -16073593 + THE1B LTR MaLR 1 364 0 2683 288 39 19 chr21 18833977 18834093 -16073477 + L1M4b LINE L1 855 967 -5892 781 196 16 16 chr21 18834119 18834313 -16073257 - L1MA9 LINE L1 0 6312 6119 657 212 50 6 chr21 18834322 18834501 -16073069 + L1MA9 LINE L1 5958 6144 -168 889 294 45 0 chr21 18834484 18834729 -16072841 + L1M4b LINE L1 980 1235 -5624 953 226 64 14 chr21 18834732 18835029 -16072541 + L1M4b LINE L1 1251 1562 -5297 12071 192 31 12 chr21 18835019 18837313 -16070257 + L1M4 LINE L1 9 2346 -5219 4614 166 2 0 chr21 18837321 18838117 -16069453 + L1P LINE L1 4230 5027 -1119 1688 187 3 0 chr21 18838132 18838438 -16069132 - AluSx SINE Alu 0 307 1 309 220 121 0 chr21 18838438 18838529 -16069041 - L1MDa LINE L1 -4789 1751 1650 195 100 0 0 chr21 18839022 18839052 -16068518 + (TATG)n Simple_repeat Simple_repeat 4 33 0 23 0 0 0 chr21 18839373 18839396 -16068174 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr21 18839457 18839490 -16068080 + AT_rich Low_complexity Low_complexity 1 33 0 313 306 78 55 chr21 18839957 18840339 -16067231 + L1M4 LINE L1 4083 4473 -3092 5564 88 18 12 chr21 18840770 18841589 -16065981 + L1PA13 LINE L1 5328 6151 -12 299 22 0 44 chr21 18841592 18841637 -16065933 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2142 113 0 0 chr21 18841640 18841931 -16065639 - AluSc SINE Alu -18 291 1 1334 197 17 38 chr21 18842137 18842482 -16065088 - MER44D DNA MER2_type -1 608 1 300 275 38 75 chr21 18842517 18842677 -16064893 + MLT1E LTR MaLR 27 180 -362 697 219 24 111 chr21 18842769 18842978 -16064592 + MLT1E LTR MaLR 296 470 -123 29 28 0 0 chr21 18844746 18844782 -16062788 + AT_rich Low_complexity Low_complexity 1 36 0 317 310 70 0 chr21 18847721 18847879 -16059691 + Charlie7 DNA MER1_type 2008 2176 -436 686 229 69 14 chr21 18848233 18848508 -16059062 + Charlie1b DNA MER1_type 103 392 -131 21 0 0 0 chr21 18851183 18851204 -16056366 + AT_rich Low_complexity Low_complexity 1 21 0 2244 107 0 3 chr21 18851753 18852051 -16055519 - AluSq SINE Alu -16 297 1 2114 120 0 3 chr21 18853121 18853420 -16054150 + AluSx SINE Alu 1 298 -14 531 186 20 0 chr21 18853582 18853684 -16053886 - MER70B LTR ERVL -21 557 454 2012 116 10 32 chr21 18854027 18854338 -16053232 - AluSx SINE Alu -8 304 1 1949 179 77 15 chr21 18854483 18854886 -16052684 - MSTA LTR MaLR 0 428 1 9181 166 30 10 chr21 18854886 18856504 -16051066 - MSTA-int LTR MaLR 0 1651 1 477 158 12 0 chr21 18856505 18856587 -16050983 - MSTA LTR MaLR -2 424 342 1795 104 93 25 chr21 18856766 18857044 -16050526 - AluSg SINE Alu -13 297 1 23 68 0 0 chr21 18858486 18858530 -16049040 + AT_rich Low_complexity Low_complexity 1 44 0 961 309 48 39 chr21 18859393 18859826 -16047744 - MLT1H LTR MaLR -112 437 1 2087 133 0 7 chr21 18860295 18860595 -16046975 - AluSx SINE Alu -14 298 1 1509 181 14 40 chr21 18860888 18861242 -16046328 - L1MA4 LINE L1 -5 6295 5951 964 73 0 0 chr21 18861759 18861882 -16045688 + AluSg/x SINE Alu 174 296 -14 42 57 0 0 chr21 18862471 18862541 -16045029 + AT_rich Low_complexity Low_complexity 1 70 0 721 337 44 46 chr21 18862736 18863148 -16044422 + L1MC4a LINE L1 6528 6938 -870 1366 234 17 20 chr21 18863158 18863504 -16044066 + L1 LINE L1 4757 5101 -1045 269 176 0 0 chr21 18863499 18863550 -16044020 + L1MB1 LINE L1 6072 6122 -67 1937 114 16 36 chr21 18863577 18863885 -16043685 + AluSx SINE Alu 1 302 -10 232 221 63 21 chr21 18864017 18864112 -16043458 + L1MC5 LINE L1 7110 7208 -753 950 299 50 57 chr21 18864251 18864930 -16042640 + L1MC5 LINE L1 7262 7935 -26 292 219 16 0 chr21 18866516 18866580 -16040990 + L2 LINE L2 3249 3313 0 2021 114 0 66 chr21 18867505 18867839 -16039731 - AluSq SINE Alu -1 312 1 1863 152 37 56 chr21 18867898 18868274 -16039296 + THE1C LTR MaLR 1 369 -6 330 138 0 0 chr21 18868384 18868442 -16039128 + (GA)n Simple_repeat Simple_repeat 1 58 0 9248 32 6 0 chr21 18869218 18871102 -16036468 - L1PA4 LINE L1 -2 6153 4263 2322 43 0 0 chr21 18871102 18871381 -16036189 + L1PA4 LINE L1 3985 4263 -1883 1003 306 49 3 chr21 18871394 18871718 -16035852 + ERVL LTR ERVL 3456 3794 -1970 2456 152 16 30 chr21 18872121 18872561 -16035009 - Tigger2a DNA MER2_type 0 434 1 1879 128 7 0 chr21 18873316 18873589 -16033981 + AluSq SINE Alu 22 296 -17 21 0 0 0 chr21 18873805 18873826 -16033744 + AT_rich Low_complexity Low_complexity 1 21 0 2045 118 0 7 chr21 18874328 18874634 -16032936 + L1PB1 LINE L1 5845 6148 -3 2223 129 8 19 chr21 18875144 18875523 -16032047 - THE1C LTR MaLR 0 375 1 228 185 0 19 chr21 18876929 18876983 -16030587 + (TA)n Simple_repeat Simple_repeat 1 53 0 194 182 0 23 chr21 18878517 18878561 -16029009 - L2 LINE L2 0 3313 3271 33 25 0 0 chr21 18878687 18878727 -16028843 + AT_rich Low_complexity Low_complexity 1 40 0 425 272 70 33 chr21 18879133 18879405 -16028165 + L1MC5 LINE L1 7293 7574 -387 400 152 0 51 chr21 18879399 18879478 -16028092 + L1MC1 LINE L1 3968 4042 -2104 4284 211 27 18 chr21 18879615 18880445 -16027125 + L1MC1 LINE L1 4041 4862 -1471 2440 76 3 0 chr21 18880445 18880749 -16026821 - AluY SINE Alu -6 305 1 4284 211 27 18 chr21 18880749 18881807 -16025763 + L1MC1 LINE L1 4862 5948 -385 1188 227 75 3 chr21 18881821 18882129 -16025441 + L1MC1 LINE L1 5988 6317 -16 2104 72 4 0 chr21 18882219 18882498 -16025072 + L1PA5 LINE L1 5874 6153 -1 564 219 20 90 chr21 18885176 18885377 -16022193 + L1MB7 LINE L1 1654 1840 -4544 2724 235 35 42 chr21 18885384 18886469 -16021101 + L1MB7 LINE L1 3146 4222 -2160 573 104 0 10 chr21 18886497 18886593 -16020977 + AluY SINE Alu 216 310 -1 1293 261 56 12 chr21 18886598 18887081 -16020489 + L1MB7 LINE L1 4226 4729 -1653 4021 145 29 4 chr21 18887085 18887776 -16019794 - L1MA5 LINE L1 -125 6175 5468 641 171 0 0 chr21 18887795 18887912 -16019658 + L1MA5 LINE L1 6181 6297 -3 751 222 26 0 chr21 18887927 18888121 -16019449 + L1MB7 LINE L1 4725 4923 -1459 3779 37 16 0 chr21 18888144 18888885 -16018685 - L1PA5 LINE L1 -423 5731 4982 3214 65 0 0 chr21 18888885 18889299 -16018271 + L1PA5 LINE L1 5740 6153 -1 3812 217 35 25 chr21 18889300 18889646 -16017924 + L1MB7 LINE L1 4929 5270 -1150 2271 110 48 20 chr21 18889646 18890000 -16017570 - THE1B LTR MaLR 0 364 1 3812 217 35 25 chr21 18890000 18891031 -16016539 + L1MB7 LINE L1 5270 6316 -104 1915 163 119 13 chr21 18891031 18891418 -16016152 - MSTA LTR MaLR 0 428 1 3812 217 35 25 chr21 18891418 18891500 -16016070 + L1MB7 LINE L1 6316 6396 -24 1000 216 30 10 chr21 18891639 18891838 -16015732 + MER20 DNA MER1_type 17 219 0 1122 219 108 44 chr21 18892477 18892820 -16014750 + MLT1A1 LTR MaLR 1 365 0 518 198 9 26 chr21 18893516 18893632 -16013938 - L1MC3 LINE L1 0 7785 7672 508 224 68 20 chr21 18893636 18893783 -16013787 + MLT1D LTR MaLR 3 156 -349 661 275 58 27 chr21 18893808 18894066 -16013504 + MLT1G3 LTR MaLR 69 334 -196 319 300 56 0 chr21 18894262 18894352 -16013218 - MER91A DNA MER1_type -89 107 13 1680 220 47 18 chr21 18897099 18897549 -16010021 - MLT1C LTR MaLR -4 463 1 628 284 63 29 chr21 18897803 18898042 -16009528 + MIR SINE MIR 2 248 -14 1810 171 70 23 chr21 18898148 18898492 -16009078 + THE1B LTR MaLR 3 362 -2 11332 103 3 3 chr21 18898494 18900074 -16007496 + THE1B-int LTR MaLR 1 1580 0 2040 149 54 17 chr21 18900076 18900425 -16007145 + THE1B LTR MaLR 3 364 0 2303 111 25 22 chr21 18901079 18901440 -16006130 - THE1B LTR MaLR -2 362 1 1218 90 6 0 chr21 18901440 18901617 -16005953 - THE1B-int LTR MaLR 0 1580 1403 1152 262 134 32 chr21 18902247 18902785 -16004785 + MLT1E LTR MaLR 1 593 0 435 311 37 49 chr21 18903524 18903688 -16003882 - MER5B DNA MER1_type -16 162 1 201 257 176 0 chr21 18903862 18903936 -16003634 - L2 LINE L2 -2 3270 3184 1690 158 65 57 chr21 18904945 18905670 -16001900 + LTR1B LTR ERV1 1 826 0 229 365 35 35 chr21 18906291 18906436 -16001134 - L2 LINE L2 -556 2758 2614 2703 184 31 10 chr21 18909125 18909859 -15997711 + L1MA9 LINE L1 5042 5789 -523 785 154 22 0 chr21 18909929 18910065 -15997505 + L1MA9 LINE L1 5800 5938 -374 304 115 33 33 chr21 18910065 18910187 -15997383 + (TA)n Simple_repeat Simple_repeat 1 122 0 1915 186 28 3 chr21 18910755 18911109 -15996461 - MLT1A1 LTR MaLR -2 363 1 36 23 0 0 chr21 18911172 18911215 -15996355 + AT_rich Low_complexity Low_complexity 1 43 0 230 342 81 54 chr21 18911472 18911770 -15995800 - L2 LINE L2 -430 2884 2579 1238 140 17 43 chr21 18912708 18912943 -15994627 - L1PA16 LINE L1 -7 6159 5931 577 96 0 106 chr21 18912947 18913051 -15994519 - L1PA16 LINE L1 -331 5835 5743 359 230 7 104 chr21 18913206 18913288 -15994282 - L2 LINE L2 -48 3265 3199 1473 246 72 37 chr21 18913288 18913775 -15993795 - MLT1D LTR MaLR 0 505 2 359 230 7 104 chr21 18913775 18913827 -15993743 - L2 LINE L2 -114 3199 3144 2114 129 0 3 chr21 18913827 18914137 -15993433 + AluSx SINE Alu 1 309 -3 672 117 0 0 chr21 18914145 18914239 -15993331 + AluSg/x SINE Alu 194 287 -22 202 300 58 50 chr21 18914374 18914494 -15993076 - L2 LINE L2 -289 3024 2904 695 303 40 34 chr21 18914498 18914878 -15992692 - L2 LINE L2 -1102 2212 1831 354 45 0 0 chr21 18915312 18915356 -15992214 + (TTTC)n Simple_repeat Simple_repeat 1 44 0 2152 110 7 0 chr21 18915368 18915667 -15991903 - AluSx SINE Alu -11 301 1 1546 189 54 47 chr21 18916050 18916437 -15991133 - MLT1B LTR MaLR 0 390 1 523 327 105 13 chr21 18916923 18917229 -15990341 - L1ME LINE L1 -519 5651 5318 894 218 21 0 chr21 18917589 18917782 -15989788 - MER20 DNA MER1_type 0 219 23 848 182 0 26 chr21 18917796 18917950 -15989620 - AluJb SINE Alu -30 282 133 1160 129 0 11 chr21 18917950 18918128 -15989442 - AluSg/x SINE Alu 0 310 135 470 351 77 31 chr21 18918190 18918515 -15989055 - L1ME LINE L1 -1708 4438 4099 1799 201 16 69 chr21 18918562 18918994 -15988576 + MLT2D LTR ERVL 6 414 0 801 268 119 38 chr21 18919104 18919447 -15988123 + MLT1C LTR MaLR 97 467 0 713 224 23 61 chr21 18919515 18919729 -15987841 + LTR1B LTR ERV1 1 206 -620 1063 189 129 34 chr21 18919808 18920072 -15987498 + LTR1B LTR ERV1 315 603 -223 1102 260 88 15 chr21 18920293 18920624 -15986946 - Charlie1 DNA MER1_type -2406 355 1 4949 164 33 14 chr21 18922311 18923577 -15983993 - L1MB1 LINE L1 0 6168 4872 3643 200 31 22 chr21 18923584 18924430 -15983140 + L1 LINE L1 3949 4805 -1341 1808 167 10 0 chr21 18924430 18924730 -15982840 + AluSx SINE Alu 1 303 -9 3643 200 31 22 chr21 18924730 18924783 -15982787 + L1 LINE L1 4805 4856 -1290 2008 123 11 0 chr21 18925453 18925750 -15981820 + AluSg SINE Alu 1 300 0 5332 176 32 29 chr21 18925843 18926981 -15980589 - L1MC1 LINE L1 -6 6327 5186 22 0 0 0 chr21 18927470 18927492 -15980078 + AT_rich Low_complexity Low_complexity 1 22 0 242 270 36 54 chr21 18928650 18928761 -15978809 - L1MC/D LINE L1 -2002 5806 5698 2029 125 57 25 chr21 18928782 18929135 -15978435 - THE1B LTR MaLR 0 364 1 11105 110 8 8 chr21 18929135 18930714 -15976856 - THE1B-int LTR MaLR 0 1580 1 2174 121 73 9 chr21 18930716 18931056 -15976514 - THE1B LTR MaLR -2 362 1 292 301 73 32 chr21 18931122 18931421 -15976149 - L1MC/D LINE L1 -545 5625 5306 1626 176 3 15 chr21 18931421 18931751 -15975819 - L1MB3 LINE L1 -2 6181 5856 292 301 73 32 chr21 18931751 18931777 -15975793 - L1MC/D LINE L1 -864 5306 5283 318 26 0 0 chr21 18931909 18931948 -15975622 + (TG)n Simple_repeat Simple_repeat 2 40 0 1783 201 22 19 chr21 18932001 18932365 -15975205 + MLT1A1 LTR MaLR 1 365 0 793 253 79 0 chr21 18932893 18933071 -15974499 - L1MB5 LINE L1 -1 6173 5982 1779 142 18 48 chr21 18933933 18934264 -15973306 - MSTC LTR MaLR 0 428 108 21 82 0 0 chr21 18934270 18934319 -15973251 + AT_rich Low_complexity Low_complexity 1 49 0 5703 127 37 18 chr21 18934753 18936488 -15971082 - L1PA15 LINE L1 -2 6163 4414 317 333 55 9 chr21 18936708 18936927 -15970643 + L1ME LINE L1 5523 5751 -370 2334 80 3 0 chr21 18937171 18937472 -15970098 + AluSp SINE Alu 1 302 -11 2025 168 6 31 chr21 18937495 18937852 -15969718 + MER7A DNA MER2_type 1 346 0 23 0 0 0 chr21 18938014 18938037 -15969533 + AT_rich Low_complexity Low_complexity 1 23 0 2217 120 0 0 chr21 18938077 18938378 -15969192 - AluSx SINE Alu -11 301 1 23 33 0 0 chr21 18938529 18938559 -15969011 + AT_rich Low_complexity Low_complexity 1 30 0 334 295 3 7 chr21 18939292 18939434 -15968136 + L1MC/D LINE L1 5451 5591 -578 33 56 0 0 chr21 18939952 18940006 -15967564 + AT_rich Low_complexity Low_complexity 1 54 0 2257 122 42 11 chr21 18940666 18941019 -15966551 - THE1B LTR MaLR 0 364 1 277 212 0 24 chr21 18941027 18941112 -15966458 + GA-rich Low_complexity Low_complexity 3 85 0 1273 155 3 119 chr21 18942541 18942876 -15964694 - L1 LINE L1 -1239 4907 4612 1272 158 0 9 chr21 18942870 18943092 -15964478 + L1MA4 LINE L1 5545 5764 -536 1148 184 49 16 chr21 18943092 18943336 -15964234 + AluJo SINE Alu 58 309 -3 2283 184 23 6 chr21 18943343 18943816 -15963754 + L1MA4 LINE L1 5814 6294 -6 180 276 17 17 chr21 18944384 18944442 -15963128 - L3 LINE CR1 -311 1266 1209 2321 104 3 0 chr21 18945883 18946190 -15961380 - AluSg SINE Alu -2 308 1 26 30 0 0 chr21 18946509 18946542 -15961028 + AT_rich Low_complexity Low_complexity 1 33 0 2179 114 7 3 chr21 18946638 18946946 -15960624 + AluSx SINE Alu 1 309 -3 208 147 0 0 chr21 18947038 18947072 -15960498 + (A)n Simple_repeat Simple_repeat 1 34 0 228 375 72 29 chr21 18947190 18947398 -15960172 - MIR SINE MIR -26 236 20 258 176 0 0 chr21 18947672 18947723 -15959847 + GA-rich Low_complexity Low_complexity 2 52 0 261 57 0 0 chr21 18947895 18947930 -15959640 + (TG)n Simple_repeat Simple_repeat 2 36 0 2030 72 4 0 chr21 18947931 18948180 -15959390 + AluSg SINE Alu 46 295 -15 22 0 0 0 chr21 18948312 18948334 -15959236 + AT_rich Low_complexity Low_complexity 1 22 0 202 192 19 19 chr21 18949461 18949513 -15958057 + A-rich Low_complexity Low_complexity 1 52 0 502 294 91 50 chr21 18949618 18949938 -15957632 + L2 LINE L2 2900 3232 -81 261 378 16 0 chr21 18949973 18950100 -15957470 - L2 LINE L2 -488 2826 2698 2170 13 0 0 chr21 18950706 18950944 -15956626 - AluYb8 SINE Alu -4 314 77 1773 174 0 14 chr21 18951161 18951454 -15956116 + AluJo SINE Alu 3 291 -21 23 33 0 0 chr21 18951591 18951621 -15955949 + AT_rich Low_complexity Low_complexity 1 30 0 23 86 0 0 chr21 18952640 18952698 -15954872 + AT_rich Low_complexity Low_complexity 1 58 0 838 250 11 11 chr21 18954328 18954516 -15953054 + MER5A DNA MER1_type 2 189 0 255 61 0 0 chr21 18955265 18955298 -15952272 + (CA)n Simple_repeat Simple_repeat 2 34 0 519 153 37 18 chr21 18955298 18955461 -15952109 + GA-rich Low_complexity Low_complexity 1 166 0 223 219 12 12 chr21 18955525 18955607 -15951963 + GA-rich Low_complexity Low_complexity 1 82 0 1712 211 65 3 chr21 18955609 18955979 -15951591 - MLT2D LTR ERVL -19 395 3 389 284 60 17 chr21 18956205 18956321 -15951249 + MER5B DNA MER1_type 7 127 -51 705 194 33 50 chr21 18956983 18957163 -15950407 + MER5A DNA MER1_type 10 186 -3 29 0 0 0 chr21 18957285 18957314 -15950256 + AT_rich Low_complexity Low_complexity 1 29 0 16962 92 8 2 chr21 18957572 18960947 -15946623 + L1PA7 LINE L1 2761 6150 -4 22 0 0 0 chr21 18961840 18961862 -15945708 + AT_rich Low_complexity Low_complexity 1 22 0 225 350 0 8 chr21 18962734 18962851 -15944719 - HAL1b LINE L1 -627 721 606 373 347 82 28 chr21 18963056 18963347 -15944223 - HAL1b LINE L1 -917 431 125 301 333 43 14 chr21 18965101 18965242 -15942328 - L1MC/D LINE L1 -928 5431 5287 229 195 13 13 chr21 18965306 18965383 -15942187 + (TG)n Simple_repeat Simple_repeat 2 78 0 2042 115 4 0 chr21 18967319 18967598 -15939972 - AluSq SINE Alu -33 280 1 1271 150 0 0 chr21 18969111 18969304 -15938266 - AluJb SINE Alu 0 312 120 421 206 71 17 chr21 18969841 18970079 -15937491 + L1ME LINE L1 5244 5503 -659 21 0 0 0 chr21 18970464 18970485 -15937085 + AT_rich Low_complexity Low_complexity 1 21 0 1498 252 24 58 chr21 18972747 18973575 -15933995 - L1M4 LINE L1 -3147 2999 2210 273 151 0 0 chr21 18973579 18973632 -15933938 + (TA)n Simple_repeat Simple_repeat 2 54 0 389 270 0 0 chr21 18973636 18973725 -15933845 + L1MC4 LINE L1 6614 6702 -1340 329 241 46 0 chr21 18973669 18973756 -15933814 - L1MC4 LINE L1 -1338 6704 6614 540 240 0 0 chr21 18973763 18973942 -15933628 + (TA)n Simple_repeat Simple_repeat 2 180 0 220 331 112 25 chr21 18974373 18974533 -15933037 - L3 LINE CR1 -1 1576 1403 28 29 0 0 chr21 18975576 18975611 -15931959 + AT_rich Low_complexity Low_complexity 1 35 0 529 291 6 6 chr21 18978364 18978522 -15929048 - LTR41 LTR ERVL -615 158 1 304 344 41 8 chr21 18978564 18978686 -15928884 + MIR SINE MIR 31 156 -106 21 0 0 0 chr21 18978689 18978710 -15928860 + AT_rich Low_complexity Low_complexity 1 21 0 2753 198 8 11 chr21 18979112 18979719 -15927851 + L1 LINE L1 4759 5363 -783 4570 182 29 13 chr21 18979805 18980738 -15926832 - L1MA9 LINE L1 -1 6311 5364 252 217 43 14 chr21 18980752 18980821 -15926749 - MIR SINE MIR -72 136 66 1392 212 90 40 chr21 18981159 18981536 -15926034 + MSTD LTR MaLR 1 396 0 1049 190 58 16 chr21 18981767 18982078 -15925492 - MER33 DNA MER1_type 0 324 1 387 0 0 0 chr21 18982754 18982797 -15924773 + (CA)n Simple_repeat Simple_repeat 2 44 0 190 325 74 61 chr21 18983592 18983730 -15923840 + L2 LINE L2 3019 3154 -159 230 0 0 32 chr21 18983730 18983761 -15923809 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2183 95 0 3 chr21 18983763 18984046 -15923524 - AluSq SINE Alu -31 282 1 190 325 74 61 chr21 18984046 18984135 -15923435 + L2 LINE L2 3154 3252 -61 1698 124 62 8 chr21 18984357 18984616 -15922954 - AluSx SINE Alu -16 296 24 201 154 77 0 chr21 18985649 18985688 -15921882 - L2 LINE L2 -11 3302 3261 230 155 52 35 chr21 18987545 18987603 -15919967 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 610 238 28 61 chr21 18988845 18989026 -15918544 + MER20 DNA MER1_type 1 175 -44 220 291 114 0 chr21 18989808 18989887 -15917683 + L2 LINE L2 3204 3291 -22 245 50 0 25 chr21 18990534 18990574 -15916996 + (TTTTTG)n Simple_repeat Simple_repeat 1 39 0 309 302 40 67 chr21 18990893 18991042 -15916528 - MIR SINE MIR -50 212 68 552 56 0 0 chr21 18991464 18991536 -15916034 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 265 320 60 10 chr21 18992006 18992106 -15915464 - L3 LINE CR1 -243 1334 1230 227 306 118 0 chr21 18993544 18993629 -15913941 - MIR SINE MIR -148 114 20 204 40 0 0 chr21 18994118 18994143 -15913427 + (A)n Simple_repeat Simple_repeat 1 25 0 639 291 51 30 chr21 18994380 18994614 -15912956 + MER45C DNA AcHobo 58 296 -657 269 191 0 0 chr21 18994753 18994800 -15912770 + MER45C DNA AcHobo 906 952 -1 252 401 43 11 chr21 18994912 18995189 -15912381 + L2 LINE L2 1715 2000 -1314 28 29 0 0 chr21 18995354 18995389 -15912181 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr21 18995804 18995831 -15911739 + AT_rich Low_complexity Low_complexity 1 27 0 275 54 89 27 chr21 18995903 18996015 -15911555 + (TA)n Simple_repeat Simple_repeat 1 119 0 247 276 28 90 chr21 18996024 18996169 -15911401 - MIR SINE MIR -58 204 69 203 307 23 45 chr21 18996212 18996300 -15911270 - L3 LINE CR1 -87 1490 1405 584 273 8 0 chr21 18996915 18997036 -15910534 + MER63A DNA MER1_type 89 210 0 845 240 26 5 chr21 18997055 18997265 -15910305 + MIR SINE MIR 34 241 -21 21 0 0 0 chr21 18997275 18997296 -15910274 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 18997398 18997419 -15910151 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr21 18997507 18997540 -15910030 + (CA)n Simple_repeat Simple_repeat 2 34 0 370 347 69 57 chr21 18997749 18997945 -15909625 - L3 LINE CR1 -1 1576 1373 2043 106 3 14 chr21 18997945 18998269 -15909301 - AluY SINE Alu 0 311 1 370 347 69 57 chr21 18998269 18998389 -15909181 - L3 LINE CR1 -204 1373 1256 2182 103 7 3 chr21 18998982 18999283 -15908287 - AluSp SINE Alu -11 302 1 597 274 0 25 chr21 18999378 18999535 -15908035 + MLT1E LTR MaLR 9 161 -432 186 43 0 0 chr21 18999874 18999897 -15907673 + (AATTG)n Simple_repeat Simple_repeat 3 25 0 2561 40 0 46 chr21 19000951 19001277 -15906293 - AluY SINE Alu 0 311 1 272 342 17 34 chr21 19002265 19002382 -15905188 - L2 LINE L2 -4 3268 3154 229 301 12 36 chr21 19003876 19003959 -15903611 - MIR SINE MIR -73 189 109 30 0 0 0 chr21 19004072 19004102 -15903468 + AT_rich Low_complexity Low_complexity 1 30 0 2620 197 54 13 chr21 19004328 19005232 -15902338 + L1MB8 LINE L1 4890 5837 -341 599 224 8 1 chr21 19006941 19007194 -15900376 + AluJo SINE Alu 3 291 -21 561 222 142 23 chr21 19007635 19007811 -15899759 + MIR SINE MIR 29 225 -37 1597 288 108 38 chr21 19010370 19010618 -15896952 + L2 LINE L2 2123 2352 -961 2032 108 42 3 chr21 19010618 19010906 -15896664 - AluSx SINE Alu -13 299 1 1597 288 108 38 chr21 19010906 19011468 -15896102 + L2 LINE L2 2352 3023 -290 191 333 0 0 chr21 19011650 19011710 -15895860 + L2 LINE L2 3254 3313 0 1949 93 12 0 chr21 19011878 19012135 -15895435 + AluSc SINE Alu 45 304 -5 4597 190 22 16 chr21 19012977 19014447 -15893123 - L1MA9 LINE L1 -39 6337 4852 621 232 77 52 chr21 19014446 19014640 -15892930 - L1MA9 LINE L1 -5938 203 5 345 292 22 15 chr21 19014646 19014783 -15892787 + Charlie2b DNA MER1_type 1035 1172 -1610 2636 196 36 24 chr21 19015148 19015605 -15891965 - MER74A LTR ERVL 0 558 91 2495 50 33 0 chr21 19015605 19015904 -15891666 + AluY SINE Alu 1 309 -2 2636 196 36 24 chr21 19015904 19015997 -15891573 - MER74A LTR ERVL -467 91 1 21 36 0 0 chr21 19016796 19016824 -15890746 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr21 19016927 19016962 -15890608 + AT_rich Low_complexity Low_complexity 1 35 0 2517 43 0 10 chr21 19017323 19017626 -15889944 + AluY SINE Alu 3 302 -9 317 226 0 0 chr21 19017914 19017976 -15889594 + Charlie2b DNA MER1_type 1292 1353 -1429 1653 223 8 16 chr21 19018364 19018732 -15888838 - MLT1A1 LTR MaLR 0 365 1 747 261 68 30 chr21 19018789 19019187 -15888383 + Charlie2 DNA MER1_type 1913 2325 -537 226 206 44 29 chr21 19019202 19019270 -15888300 - MER104 DNA MER2_type 0 1895 1827 277 230 14 0 chr21 19019608 19019682 -15887888 - MER104 DNA MER2_type -1816 79 5 1289 195 83 56 chr21 19019702 19020076 -15887494 + MLT1B LTR MaLR 1 384 -6 331 199 89 47 chr21 19020132 19020323 -15887247 + Charlie2 DNA MER1_type 2368 2566 -296 535 154 22 0 chr21 19020451 19020542 -15887028 + MSTA LTR MaLR 1 93 -335 766 215 108 14 chr21 19020535 19020749 -15886821 + MSTA LTR MaLR 194 427 -1 288 283 10 0 chr21 19020749 19020844 -15886726 + Charlie2 DNA MER1_type 2709 2804 -58 317 314 71 7 chr21 19021088 19021228 -15886342 + MLT1J2 LTR MaLR 293 441 -9 23 0 0 0 chr21 19021878 19021901 -15885669 + AT_rich Low_complexity Low_complexity 1 23 0 4793 156 8 27 chr21 19024716 19024964 -15882606 + L1PB3 LINE L1 4979 5230 -924 541 101 0 13 chr21 19024964 19025043 -15882527 - MADE1 DNA Mariner -2 78 1 4793 156 8 27 chr21 19025043 19025890 -15881680 + L1PB3 LINE L1 5230 6050 -104 475 188 0 0 chr21 19025896 19025981 -15881589 - L1P5 LINE L1 -357 5797 5713 689 127 8 8 chr21 19025986 19026104 -15881466 + L1PB3 LINE L1 6036 6153 -1 657 283 50 12 chr21 19026727 19026967 -15880603 + HAL1 LINE L1 1471 1719 -788 2052 113 3 3 chr21 19027033 19027342 -15880228 + AluSx SINE Alu 1 309 0 22 56 0 0 chr21 19027956 19027992 -15879578 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 19028429 19028467 -15879103 + AT_rich Low_complexity Low_complexity 1 38 0 1783 155 13 25 chr21 19029066 19029382 -15878188 + AluJo SINE Alu 1 312 0 377 328 21 47 chr21 19029422 19029614 -15877956 + MER5A DNA MER1_type 1 187 -2 271 261 0 0 chr21 19029798 19029863 -15877707 + L1MDa LINE L1 1621 1685 -4855 435 330 18 64 chr21 19029863 19030081 -15877489 + L1MD2 LINE L1 5900 6107 -252 21 36 0 0 chr21 19030675 19030703 -15876867 + AT_rich Low_complexity Low_complexity 1 28 0 1607 216 0 0 chr21 19030926 19031256 -15876314 - AluJo SINE Alu 0 331 2 1720 185 99 31 chr21 19031272 19031688 -15875882 - L1MA9 LINE L1 -39 6273 5830 25 51 0 0 chr21 19033098 19033137 -15874433 + AT_rich Low_complexity Low_complexity 1 39 0 2236 73 0 4 chr21 19033186 19033460 -15874110 - AluY SINE Alu -15 296 24 7030 53 5 1 chr21 19033985 19035151 -15872419 + L1PA6 LINE L1 4976 6144 -10 342 0 0 0 chr21 19035152 19035190 -15872380 + (CA)n Simple_repeat Simple_repeat 1 38 0 2185 111 0 0 chr21 19035211 19035509 -15872061 - AluY SINE Alu -13 298 1 323 242 48 97 chr21 19036235 19036400 -15871170 - MER5A DNA MER1_type -29 160 4 28 29 0 0 chr21 19036716 19036751 -15870819 + AT_rich Low_complexity Low_complexity 1 35 0 483 303 0 51 chr21 19038623 19038801 -15868769 + MIR SINE MIR 7 175 -87 23 33 0 0 chr21 19040975 19041005 -15866565 + AT_rich Low_complexity Low_complexity 1 30 0 405 288 41 34 chr21 19041449 19041595 -15865975 + MER5B DNA MER1_type 3 149 -29 23 54 0 0 chr21 19044202 19044239 -15863331 + AT_rich Low_complexity Low_complexity 1 37 0 25 23 0 23 chr21 19044771 19044800 -15862770 + AT_rich Low_complexity Low_complexity 1 30 -12 2234 103 0 0 chr21 19044800 19045091 -15862479 - AluSx SINE Alu -21 291 1 25 23 0 23 chr21 19045091 19045104 -15862466 + AT_rich Low_complexity Low_complexity 30 42 0 622 139 0 0 chr21 19045104 19045205 -15862365 - L1MA2 LINE L1 0 6304 6204 1693 255 25 0 chr21 19045980 19046412 -15861158 + L1 LINE L1 2469 2911 -3235 432 0 0 0 chr21 19046419 19046467 -15861103 + (CA)n Simple_repeat Simple_repeat 1 48 0 4202 184 54 12 chr21 19046482 19047482 -15860088 + L1 LINE L1 2960 4001 -2145 341 337 94 38 chr21 19047627 19048022 -15859548 + L2 LINE L2 2897 3313 0 289 328 104 0 chr21 19048031 19048165 -15859405 + MIR3 SINE MIR 54 201 -7 513 306 11 22 chr21 19048383 19048563 -15859007 - MER5A DNA MER1_type -5 184 7 1259 128 5 29 chr21 19048720 19048924 -15858646 + MER20 DNA MER1_type 18 216 -3 24 0 0 0 chr21 19048970 19048994 -15858576 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr21 19049716 19049738 -15857832 + AT_rich Low_complexity Low_complexity 1 22 0 324 295 216 0 chr21 19050376 19050515 -15857055 - MER5A DNA MER1_type -5 184 16 1854 157 0 17 chr21 19050515 19050691 -15856879 - AluJb SINE Alu -23 289 118 246 81 0 0 chr21 19050691 19050728 -15856842 + (TGG)n Simple_repeat Simple_repeat 1 37 0 1854 157 0 17 chr21 19050728 19050845 -15856725 - AluJb SINE Alu -194 118 1 2151 126 0 0 chr21 19050930 19051224 -15856346 + AluSx SINE Alu 1 294 -18 604 274 106 21 chr21 19051412 19051649 -15855921 + MER90 LTR ERV1 87 343 -232 276 180 0 0 chr21 19051721 19051771 -15855799 + MLT1E3 LTR MaLR 123 172 -452 364 218 85 75 chr21 19051742 19051930 -15855640 + MLT1D LTR MaLR 111 302 -203 188 254 36 0 chr21 19051981 19052036 -15855534 - L2 LINE L2 -536 2778 2722 183 227 23 0 chr21 19052116 19052160 -15855410 - MIR SINE MIR -65 143 99 1249 180 0 0 chr21 19052173 19052384 -15855186 + MLT1D LTR MaLR 295 505 0 835 297 5 5 chr21 19052384 19052600 -15854970 + MER90 LTR ERV1 399 614 0 2172 148 85 10 chr21 19053178 19053576 -15853994 + MSTA LTR MaLR 1 428 0 714 298 14 9 chr21 19053689 19053907 -15853663 + MER90 LTR ERV1 396 614 0 3040 216 80 54 chr21 19055085 19055131 -15852439 + L1MC4 LINE L1 6735 6778 -1264 2398 78 3 0 chr21 19055131 19055425 -15852145 - AluSc SINE Alu -14 295 1 2479 60 0 10 chr21 19055431 19055733 -15851837 - AluY SINE Alu -12 299 1 3040 216 80 54 chr21 19055733 19056712 -15850858 + L1MC4 LINE L1 6782 7794 -248 679 93 17 0 chr21 19056768 19056886 -15850684 + (TAGA)n Simple_repeat Simple_repeat 2 121 0 243 272 142 59 chr21 19057105 19057274 -15850296 - L3 LINE CR1 0 1577 1395 184 336 49 49 chr21 19057515 19057637 -15849933 + L2 LINE L2 3192 3313 0 4813 23 0 0 chr21 19057962 19058522 -15849048 - L1PA3 LINE L1 0 6155 5596 23 54 0 0 chr21 19059003 19059040 -15848530 + AT_rich Low_complexity Low_complexity 1 37 0 619 200 66 36 chr21 19060363 19060532 -15847038 + L1MB5 LINE L1 6012 6184 0 261 324 122 43 chr21 19061564 19061703 -15845867 - MER5A DNA MER1_type -4 185 36 783 265 76 44 chr21 19062150 19062471 -15845099 - MIR SINE MIR 0 262 2 853 140 56 34 chr21 19064062 19064240 -15843330 - L1MB7 LINE L1 -2 6182 6001 2213 74 0 7 chr21 19064345 19064663 -15842907 - AluSx SINE Alu 0 316 1 1251 201 36 0 chr21 19064722 19065011 -15842559 - L1MB7 LINE L1 -222 5962 5660 620 324 114 21 chr21 19065013 19065479 -15842091 + L2 LINE L2 2354 2862 -452 468 252 50 34 chr21 19065519 19065638 -15841932 + L2 LINE L2 3180 3300 -13 320 0 0 24 chr21 19065655 19065696 -15841874 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 949 106 30 0 chr21 19065974 19066106 -15841464 + AluSq/x SINE Alu 1 136 -177 2438 57 10 3 chr21 19067278 19067579 -15839991 - AluY SINE Alu -8 303 1 1492 253 102 55 chr21 19067831 19068397 -15839173 + MLT1E LTR MaLR 1 593 0 254 278 0 0 chr21 19068995 19069067 -15838503 + L1ME LINE L1 5800 5871 -250 251 307 11 0 chr21 19069246 19069334 -15838236 - L2 LINE L2 -189 3083 2995 8783 27 0 0 chr21 19070075 19071172 -15836398 - L1P LINE L1 -3214 2932 1836 6977 11 0 1 chr21 19071171 19072000 -15835570 + L1HS LINE L1 5328 6155 0 259 107 0 53 chr21 19072008 19072042 -15835528 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 -36 2055 128 0 0 chr21 19072042 19072324 -15835246 - AluSq SINE Alu -31 282 1 259 107 0 53 chr21 19072324 19072364 -15835206 + (CAAAAA)n Simple_repeat Simple_repeat 36 72 0 670 256 38 80 chr21 19073123 19073498 -15834072 + L1MC4 LINE L1 6658 7024 -974 29 0 0 0 chr21 19073499 19073528 -15834042 + AT_rich Low_complexity Low_complexity 1 29 0 476 95 0 14 chr21 19073663 19073737 -15833833 - MADE1 DNA Mariner -5 75 3 810 224 0 0 chr21 19073906 19074058 -15833512 + FRAM SINE Alu 1 151 -25 2138 110 7 0 chr21 19074469 19074759 -15832811 + AluSg SINE Alu 1 292 -18 2143 101 24 7 chr21 19077279 19077576 -15829994 + AluSp SINE Alu 1 302 -11 28 71 0 0 chr21 19078934 19078990 -15828580 + AT_rich Low_complexity Low_complexity 1 56 0 362 356 82 9 chr21 19079201 19079420 -15828150 + L3 LINE CR1 1039 1273 -304 306 288 64 72 chr21 19079507 19079632 -15827938 + L3 LINE CR1 1453 1576 -1 282 116 0 0 chr21 19079838 19079881 -15827689 + (CA)n Simple_repeat Simple_repeat 1 43 0 874 142 6 18 chr21 19079987 19080156 -15827414 - L1 LINE L1 -1359 4787 4621 21 0 0 0 chr21 19081053 19081074 -15826496 + AT_rich Low_complexity Low_complexity 1 21 0 211 162 27 81 chr21 19081115 19081189 -15826381 + A-rich Low_complexity Low_complexity 5 74 0 231 88 0 0 chr21 19081271 19081305 -15826265 + (TA)n Simple_repeat Simple_repeat 2 35 0 2293 94 0 7 chr21 19081305 19081604 -15825966 - AluSc SINE Alu -12 297 1 2134 79 11 4 chr21 19082096 19082398 -15825172 - AluSc SINE Alu 0 304 1 210 208 19 19 chr21 19082439 19082492 -15825078 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 203 173 19 0 chr21 19082563 19082615 -15824955 + (TA)n Simple_repeat Simple_repeat 1 53 0 7158 51 1 1 chr21 19083269 19084512 -15823058 + L1PA5 LINE L1 4909 6152 -2 204 40 0 0 chr21 19085790 19085815 -15821755 + (TATG)n Simple_repeat Simple_repeat 3 27 0 2277 122 0 0 chr21 19085900 19086211 -15821359 + AluSx SINE Alu 1 311 -1 739 246 61 26 chr21 19086622 19086850 -15820720 + MIR SINE MIR 1 236 -26 275 140 0 0 chr21 19087048 19087098 -15820472 + L1PA15 LINE L1 6000 6049 -116 605 110 8 102 chr21 19087106 19087233 -15820337 + MLT2B1 LTR ERVL 401 515 -5 711 177 7 21 chr21 19087237 19087378 -15820192 + MLT-int LTR MaLR 1 139 -1596 2661 208 83 88 chr21 19087388 19088287 -15819283 - MER21A LTR ERV1 -36 895 1 2238 218 35 8 chr21 19088287 19088864 -15818706 + MLT-int LTR MaLR 127 728 -643 2118 184 19 7 chr21 19089267 19089679 -15817891 + MLT1A1-int LTR MaLR 1317 1733 -2 1972 166 11 8 chr21 19089694 19090049 -15817521 + MLT1A1 LTR MaLR 10 365 0 350 295 60 22 chr21 19090067 19090382 -15817188 + HAL1 LINE L1 995 1321 -1186 1917 237 34 56 chr21 19090471 19091065 -15816505 - MLT1G LTR MaLR 0 590 10 730 278 65 48 chr21 19091080 19091432 -15816138 + HAL1 LINE L1 1395 1752 -755 769 218 11 11 chr21 19091432 19091611 -15815959 - MSTD LTR MaLR 0 396 218 1098 110 40 6 chr21 19091698 19091871 -15815699 - MER30 DNA MER1_type -51 179 1 454 127 45 100 chr21 19091908 19092049 -15815521 + LTR45B LTR ERV1 344 518 -7 324 70 0 0 chr21 19092701 19092744 -15814826 + (TTC)n Simple_repeat Simple_repeat 1 43 0 2416 97 3 0 chr21 19094214 19094525 -15813045 - AluSp SINE Alu -1 312 1 1165 246 61 24 chr21 19094772 19095183 -15812387 + MLT1C LTR MaLR 42 467 0 347 243 22 20 chr21 19095382 19095530 -15812040 - L1MC4 LINE L1 -1339 6983 1995 340 277 27 54 chr21 19095607 19095755 -15811815 - MIR SINE MIR -50 212 69 369 0 0 0 chr21 19096303 19096344 -15811226 + (CA)n Simple_repeat Simple_repeat 2 42 0 244 83 42 0 chr21 19096620 19096668 -15810902 - LTR66 LTR ERVL -394 216 167 209 61 82 20 chr21 19096668 19096717 -15810853 + (TA)n Simple_repeat Simple_repeat 2 53 0 1538 116 9 9 chr21 19097669 19097894 -15809676 + AluSq SINE Alu 82 306 -7 227 347 27 44 chr21 19098526 19098751 -15808819 + L2 LINE L2 2285 2505 -809 1627 167 34 11 chr21 19098917 19099186 -15808384 + AluJb SINE Alu 5 279 -33 376 230 0 23 chr21 19099242 19099329 -15808241 - L1MC4 LINE L1 -1344 6698 6614 270 0 0 0 chr21 19099539 19099569 -15808001 + (TA)n Simple_repeat Simple_repeat 1 30 0 306 148 0 0 chr21 19101028 19101082 -15806488 + (CA)n Simple_repeat Simple_repeat 2 55 0 312 148 83 65 chr21 19101264 19101372 -15806198 - MER53 DNA DNA -7 182 73 264 30 0 0 chr21 19101375 19101408 -15806162 + (A)n Simple_repeat Simple_repeat 1 33 0 6017 48 0 0 chr21 19101776 19102509 -15805061 - L1PA6 LINE L1 -5 6149 5417 22 0 0 0 chr21 19102585 19102607 -15804963 + AT_rich Low_complexity Low_complexity 1 22 0 2269 102 3 0 chr21 19102829 19103123 -15804447 - AluSg SINE Alu -15 295 1 334 246 0 0 chr21 19103163 19103232 -15804338 + MIR3 SINE MIR 126 194 -14 271 181 96 106 chr21 19103853 19103947 -15803623 + MLT1I LTR MaLR 118 210 -199 250 271 39 65 chr21 19103948 19104103 -15803467 + MLT1J1 LTR MaLR 243 393 -53 378 214 134 80 chr21 19104250 19104451 -15803119 - L1ME LINE L1 -303 5818 5607 462 97 0 0 chr21 19105066 19105128 -15802442 + MLT1B LTR MaLR 329 390 0 714 164 0 0 chr21 19105718 19105828 -15801742 + AluJb SINE Alu 190 299 -13 2257 93 10 29 chr21 19106083 19106393 -15801177 + AluSx SINE Alu 1 304 -8 2038 81 4 8 chr21 19107136 19107444 -15800126 - AluSc SINE Alu 0 328 22 194 217 0 17 chr21 19107538 19107598 -15799972 + GA-rich Low_complexity Low_complexity 3 61 0 637 152 99 20 chr21 19107642 19107793 -15799777 + L1MB4 LINE L1 6018 6180 0 2183 93 7 0 chr21 19110007 19110296 -15797274 + AluSx SINE Alu 21 311 -1 1555 137 4 22 chr21 19110490 19110768 -15796802 + L1PA16 LINE L1 5894 6166 0 2395 71 3 10 chr21 19113695 19114005 -15793565 + AluY SINE Alu 1 308 -3 193 378 24 0 chr21 19114072 19114154 -15793416 - MIR SINE MIR -135 127 44 2080 147 36 28 chr21 19116876 19117237 -15790333 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr21 19117899 19117927 -15789643 + AT_rich Low_complexity Low_complexity 1 28 0 26 74 0 0 chr21 19118005 19118059 -15789511 + AT_rich Low_complexity Low_complexity 1 54 0 225 0 0 0 chr21 19118257 19118282 -15789288 + (CA)n Simple_repeat Simple_repeat 1 25 0 618 231 42 0 chr21 19118302 19118445 -15789125 - MLT1H LTR MaLR -2 588 440 303 265 48 0 chr21 19118508 19118591 -15788979 - MLT1G3 LTR MaLR -293 237 151 513 172 21 33 chr21 19118591 19118837 -15788733 + (TA)n Simple_repeat Simple_repeat 1 243 0 298 287 11 11 chr21 19118867 19118961 -15788609 - MLT1G3 LTR MaLR -374 175 82 22 0 0 0 chr21 19120216 19120238 -15787332 + AT_rich Low_complexity Low_complexity 1 22 0 313 336 71 25 chr21 19121700 19121903 -15785667 + MIR SINE MIR 39 248 -14 1428 107 55 28 chr21 19122455 19122708 -15784862 - Tigger7 DNA MER2_type -1 2490 2231 2541 178 19 19 chr21 19123392 19123858 -15783712 + MER66B LTR ERV1 21 486 0 22 35 0 0 chr21 19126301 19126330 -15781240 + AT_rich Low_complexity Low_complexity 1 29 0 2152 118 0 0 chr21 19126653 19126940 -15780630 - AluSq SINE Alu -13 300 14 2111 111 0 17 chr21 19127084 19127381 -15780189 + AluSx SINE Alu 1 292 -20 553 250 60 36 chr21 19127566 19127814 -15779756 + L1ME3A LINE L1 5709 5962 -208 2557 161 42 7 chr21 19130642 19131094 -15776476 - MER31A LTR ERV1 0 485 18 784 295 74 32 chr21 19131434 19131773 -15775797 - MLT1H LTR MaLR -196 353 1 2580 156 60 114 chr21 19133745 19134475 -15773095 + LTR8 LTR ERV1 1 691 0 868 269 65 7 chr21 19134718 19135012 -15772558 - L1ME3A LINE L1 -273 5897 5587 471 306 85 22 chr21 19135029 19135657 -15771913 - L1ME3A LINE L1 -611 5553 4881 358 216 44 83 chr21 19135690 19135791 -15771779 - L1ME3A LINE L1 -1314 4832 4740 2451 77 0 0 chr21 19135791 19136091 -15771479 - AluY SINE Alu -6 305 6 358 216 44 83 chr21 19136091 19136170 -15771400 - L1ME3A LINE L1 -1406 4740 4659 457 250 77 12 chr21 19136200 19136368 -15771202 - L1ME3A LINE L1 -1564 4582 4404 464 274 62 33 chr21 19136622 19136921 -15770649 - L1ME3A LINE L1 -2019 4127 3812 2745 249 41 36 chr21 19136933 19137829 -15769741 - L1ME1 LINE L1 -3 6443 5543 480 239 90 38 chr21 19137823 19138004 -15769566 - L1ME1 LINE L1 -3111 3315 3145 2923 125 47 9 chr21 19138004 19138541 -15769029 - L1MA7 LINE L1 -5 6286 5730 480 239 90 38 chr21 19138541 19138727 -15768843 - L1ME1 LINE L1 -3281 3145 2933 422 273 77 13 chr21 19138734 19139126 -15768444 - L1ME1 LINE L1 -3501 2925 2497 329 300 50 21 chr21 19139137 19139277 -15768293 - L1ME1 LINE L1 -3947 2479 2336 968 287 52 65 chr21 19139510 19140082 -15767488 - L1ME1 LINE L1 -4569 2038 1474 230 266 18 97 chr21 19140848 19140961 -15766609 - L1ME1 LINE L1 -5954 462 359 2297 84 3 0 chr21 19141599 19141895 -15765675 - AluY SINE Alu -13 298 2 695 191 7 7 chr21 19141999 19142135 -15765435 - FLAM_A SINE Alu -5 137 2 2493 186 30 4 chr21 19142443 19142911 -15764659 + L1MCa LINE L1 578 1057 -5900 370 331 8 0 chr21 19143495 19143616 -15763954 + L1MCa LINE L1 1357 1478 -5381 376 317 32 37 chr21 19143722 19144183 -15763387 + L1MCa LINE L1 1812 2270 -4868 358 220 135 25 chr21 19144183 19144356 -15763214 + L1M2 LINE L1 1603 1943 -4273 2066 142 24 19 chr21 19144496 19144869 -15762701 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr21 19145445 19145481 -15762089 + AT_rich Low_complexity Low_complexity 1 36 0 2300 86 13 0 chr21 19145604 19145906 -15761664 + AluSp SINE Alu 1 306 -7 1687 142 0 0 chr21 19146113 19146359 -15761211 + AluSc SINE Alu 1 246 -63 333 118 0 0 chr21 19146359 19146410 -15761160 + (A)n Simple_repeat Simple_repeat 1 51 0 200 196 20 20 chr21 19146454 19146505 -15761065 + L2 LINE L2 3263 3313 0 634 251 43 32 chr21 19147826 19148013 -15759557 + MER5A DNA MER1_type 1 189 0 1454 223 72 21 chr21 19148255 19148632 -15758938 - MSTD LTR MaLR 0 396 1 253 306 28 0 chr21 19148691 19148799 -15758771 + MLT1L LTR MaLR 472 582 -33 680 299 33 29 chr21 19150982 19151226 -15756344 - MIR SINE MIR -17 245 1 388 354 19 0 chr21 19152065 19152223 -15755347 + MIR3 SINE MIR 16 176 -32 747 200 79 0 chr21 19152731 19152871 -15754699 - MER96 DNA MER1_type? 0 175 25 376 263 101 0 chr21 19152869 19152968 -15754602 + MER96 DNA MER1_type? 66 174 -1 2147 154 39 3 chr21 19153436 19153799 -15753771 - MLT1B LTR MaLR -14 376 1 1403 303 10 36 chr21 19155560 19156055 -15751515 + L1MA6 LINE L1 409 890 -6676 746 247 25 30 chr21 19156459 19156694 -15750876 + L1MA6 LINE L1 2118 2351 -5215 4082 211 25 8 chr21 19156695 19157629 -15749941 + L1MA6 LINE L1 2410 3359 -4207 1388 244 36 11 chr21 19157796 19158093 -15749477 + L1MA6 LINE L1 3291 3579 -3986 6667 75 49 3 chr21 19158093 19159059 -15748511 + L1PA11 LINE L1 5167 6172 -2 1388 244 36 11 chr21 19159059 19159411 -15748159 + L1MA6 LINE L1 3579 3958 -3607 837 148 15 0 chr21 19159412 19159547 -15748023 + AluSq/x SINE Alu 1 137 -176 666 202 0 0 chr21 19159562 19159740 -15747830 + (TA)n Simple_repeat Simple_repeat 2 179 0 359 264 23 0 chr21 19159758 19159845 -15747725 - L1MC4 LINE L1 -1339 6703 6615 222 156 0 0 chr21 19159846 19159891 -15747679 + (TA)n Simple_repeat Simple_repeat 1 45 0 2436 129 36 2 chr21 19159891 19160490 -15747080 - HSMAR2 DNA Mariner -66 1236 582 1545 22 21 0 chr21 19160490 19160726 -15746844 - L1PA3 LINE L1 -704 5451 5212 6600 11 1 0 chr21 19160726 19161420 -15746150 + L1PA3 LINE L1 5455 6155 0 3480 146 52 0 chr21 19161425 19161988 -15745582 - HSMAR2 DNA Mariner -707 595 4 2201 186 27 11 chr21 19161997 19162471 -15745099 + L1MA6 LINE L1 5431 5912 -1653 1175 189 5 0 chr21 19162496 19162692 -15744878 + AluSx SINE Alu 1 197 -115 6042 151 24 10 chr21 19162694 19164328 -15743242 + L1MA6 LINE L1 5921 7581 -138 2357 98 49 26 chr21 19164328 19164675 -15742895 + THE1A LTR MaLR 1 355 0 6042 151 24 10 chr21 19164675 19164810 -15742760 + L1MA6 LINE L1 7581 7713 -6 1040 177 39 0 chr21 19164983 19165164 -15742406 + MER5A DNA MER1_type 1 188 -1 243 276 0 0 chr21 19165312 19165370 -15742200 + MER52A LTR ERV1 1 58 -1697 3356 198 84 86 chr21 19166303 19167319 -15740251 + MER52A LTR ERV1 183 1196 -559 359 195 13 13 chr21 19167305 19167382 -15740188 + MER52A LTR ERV1 1679 1755 0 1025 190 9 41 chr21 19168245 19168389 -15739181 + MER20 DNA MER1_type 6 142 -77 2450 188 89 87 chr21 19168389 19169042 -15738528 + MLT1E1 LTR MaLR 1 654 0 1025 190 9 41 chr21 19169042 19169118 -15738452 + MER20 DNA MER1_type 142 219 0 193 329 26 26 chr21 19169813 19169889 -15737681 + MER5B DNA MER1_type 1 76 -102 2355 103 0 0 chr21 19170465 19170766 -15736804 - AluSx SINE Alu -3 309 9 2322 100 3 3 chr21 19171161 19171470 -15736100 - AluSx SINE Alu -2 310 2 687 160 5 43 chr21 19171882 19172069 -15735501 + (TA)n Simple_repeat Simple_repeat 1 180 0 333 298 172 7 chr21 19172094 19172245 -15735325 - MIR SINE MIR -59 203 28 210 171 0 0 chr21 19172254 19172295 -15735275 + A-rich Low_complexity Low_complexity 1 41 0 293 244 109 17 chr21 19172736 19172804 -15734766 - MER119 DNA MER1_type -3 580 520 183 42 0 0 chr21 19172804 19172828 -15734742 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 293 244 109 17 chr21 19172828 19172878 -15734692 - MER119 DNA MER1_type -63 520 451 354 241 0 0 chr21 19173357 19173465 -15734105 + (TA)n Simple_repeat Simple_repeat 1 108 0 365 206 122 13 chr21 19174452 19174586 -15732984 + MLT1H LTR MaLR 65 214 -195 1310 152 9 14 chr21 19175036 19175247 -15732323 + AluJo SINE Alu 87 296 -16 1241 163 4 52 chr21 19176454 19176687 -15730883 - AluJb SINE Alu -6 306 85 252 184 0 0 chr21 19176893 19176942 -15730628 + (TG)n Simple_repeat Simple_repeat 2 50 0 2851 110 23 94 chr21 19178357 19178739 -15728831 - L1MA4 LINE L1 -5 6295 5958 2017 113 0 32 chr21 19178739 19179023 -15728547 - AluSx SINE Alu -33 279 5 2851 110 23 94 chr21 19179023 19179159 -15728411 - L1MA4 LINE L1 -342 5958 5814 2558 80 0 0 chr21 19179166 19179477 -15728093 - AluSx SINE Alu 0 312 2 580 121 0 10 chr21 19179477 19179576 -15727994 + L1 LINE L1 4213 4310 -1836 5614 215 50 10 chr21 19179563 19180931 -15726639 + L1M4 LINE L1 3657 5078 -1068 2759 198 131 81 chr21 19180961 19181804 -15725766 - MER21A LTR ERV1 -19 912 28 527 53 13 0 chr21 19181804 19181879 -15725691 + (TA)n Simple_repeat Simple_repeat 2 77 0 25 0 0 0 chr21 19182006 19182031 -15725539 + AT_rich Low_complexity Low_complexity 1 25 0 450 301 86 6 chr21 19182102 19182265 -15725305 + MLT1J LTR MaLR 2 177 -334 583 278 73 34 chr21 19183496 19183730 -15723840 - L1MEd LINE L1 -5752 367 125 462 229 43 53 chr21 19183744 19183932 -15723638 - MER93b LTR ERV1 -28 345 160 224 284 44 88 chr21 19184721 19184925 -15722645 + L2 LINE L2 2888 3082 -190 2264 131 27 24 chr21 19184972 19185346 -15722224 + THE1C LTR MaLR 1 375 0 199 222 0 19 chr21 19185452 19185506 -15722064 + L2 LINE L2 3261 3313 0 259 279 16 0 chr21 19186236 19186297 -15721273 + MER5A DNA MER1_type 128 189 0 2435 118 134 11 chr21 19186313 19186694 -15720876 + MSTA LTR MaLR 1 428 0 1208 266 44 56 chr21 19186818 19187319 -15720251 - MLT1L LTR MaLR 0 615 121 2127 133 7 0 chr21 19187471 19187765 -15719805 + AluSx SINE Alu 1 296 -16 465 19 0 0 chr21 19188229 19188283 -15719287 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr21 19188624 19188653 -15718917 + (TG)n Simple_repeat Simple_repeat 1 29 0 476 296 19 19 chr21 19188717 19188876 -15718694 + MIR SINE MIR 48 206 -56 2314 99 0 7 chr21 19189202 19189506 -15718064 + AluSg SINE Alu 1 302 -8 1430 212 136 68 chr21 19190388 19190550 -15717020 + MLT1D LTR MaLR 3 153 -352 2304 89 3 0 chr21 19190550 19190842 -15716728 + AluSp SINE Alu 1 293 -20 1430 212 136 68 chr21 19190842 19191150 -15716420 + MLT1D LTR MaLR 153 505 0 27 0 0 0 chr21 19191862 19191889 -15715681 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr21 19192085 19192110 -15715460 + AT_rich Low_complexity Low_complexity 1 25 0 311 271 24 0 chr21 19192535 19192620 -15714950 + MLT1I LTR MaLR 323 409 0 340 284 129 0 chr21 19192792 19192908 -15714662 - L1ME3A LINE L1 -326 5844 5714 294 320 19 10 chr21 19194168 19194271 -15713299 - MIR SINE MIR -136 126 23 461 302 41 17 chr21 19195299 19195471 -15712099 + MLT1H LTR MaLR 124 299 -250 377 259 25 147 chr21 19195681 19195830 -15711740 + MER5B DNA MER1_type 1 122 -56 355 123 0 0 chr21 19195830 19195887 -15711683 - L1MA6 LINE L1 -2 6298 6242 377 259 25 147 chr21 19195887 19195934 -15711636 + MER5B DNA MER1_type 122 173 -5 247 282 144 8 chr21 19196339 19196459 -15711111 + MER5A DNA MER1_type 25 188 -1 26 0 0 0 chr21 19196615 19196641 -15710929 + AT_rich Low_complexity Low_complexity 1 26 0 317 266 64 21 chr21 19196660 19196754 -15710816 - MER5B DNA MER1_type -78 100 3 827 239 104 22 chr21 19197259 19197527 -15710043 - MLT1A1 LTR MaLR 0 365 76 6455 112 4 19 chr21 19197641 19198557 -15709013 - MER4D LTR ERV1 0 903 1 1624 172 29 48 chr21 19198785 19199099 -15708471 + AluJb SINE Alu 1 308 -4 387 127 0 0 chr21 19199107 19199170 -15708400 + (GGGA)n Simple_repeat Simple_repeat 4 66 0 681 250 134 9 chr21 19199192 19199408 -15708162 + MIR SINE MIR 9 251 -11 1607 229 14 22 chr21 19199471 19199837 -15707733 + MLT1A2 LTR MaLR 1 363 -11 706 250 0 0 chr21 19200570 19200698 -15706872 - FLAM_A SINE Alu -5 128 1 287 274 159 0 chr21 19200811 19200924 -15706646 + MER91C DNA MER1_type 7 137 -3 710 131 162 62 chr21 19201086 19201175 -15706395 + MER45A DNA AcHobo 1 80 -1501 2352 96 0 13 chr21 19201175 19201478 -15706092 - AluSg SINE Alu -11 299 1 710 131 162 62 chr21 19201478 19201548 -15706022 + MER45A DNA AcHobo 80 176 -2 323 185 37 49 chr21 19201671 19201752 -15705818 - MER5A DNA MER1_type -22 167 88 200 220 0 121 chr21 19201675 19201766 -15705804 + MER5A DNA MER1_type 38 117 -72 2099 129 7 0 chr21 19202550 19202845 -15704725 - AluSg SINE Alu -9 301 5 201 147 0 0 chr21 19202856 19202890 -15704680 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 2291 109 0 0 chr21 19204845 19205148 -15702422 + AluSg SINE Alu 1 303 -7 28 29 0 0 chr21 19205333 19205368 -15702202 + AT_rich Low_complexity Low_complexity 1 35 0 970 201 38 12 chr21 19205528 19205745 -15701825 - MER20 DNA MER1_type 0 219 6 1949 135 7 16 chr21 19206012 19206316 -15701254 + AluSx SINE Alu 1 301 -11 2282 164 21 35 chr21 19207532 19207966 -15699604 + MSTC LTR MaLR 1 428 0 2218 120 3 3 chr21 19207987 19208288 -15699282 - AluSx SINE Alu -11 301 1 784 282 0 52 chr21 19209807 19210076 -15697494 + MIR SINE MIR 7 261 -1 1356 199 64 10 chr21 19210191 19210502 -15697068 + MER58B DNA MER1_type 1 328 -13 474 245 132 87 chr21 19211991 19212346 -15695224 - L1MC4a LINE L1 -1774 6034 5664 254 274 128 30 chr21 19212427 19212591 -15694979 - L1MC4a LINE L1 -565 5556 5377 21 71 0 0 chr21 19212670 19212712 -15694858 + AT_rich Low_complexity Low_complexity 1 42 0 289 256 58 26 chr21 19212782 19212938 -15694632 - L1MC4a LINE L1 -1023 5123 4963 2485 72 0 3 chr21 19213111 19213417 -15694153 - AluY SINE Alu -6 305 1 690 285 84 55 chr21 19213444 19213953 -15693617 - L1MC4a LINE L1 -1521 4625 4102 231 353 30 11 chr21 19214055 19214321 -15693249 - L1P LINE L1 -2192 3954 3684 2324 112 0 3 chr21 19216552 19216864 -15690706 - AluSx SINE Alu -1 311 1 1423 201 51 16 chr21 19216962 19217275 -15690295 + MER58B DNA MER1_type 2 325 -16 2280 93 0 3 chr21 19217420 19217709 -15689861 - AluSg SINE Alu -22 288 1 189 0 0 0 chr21 19217805 19217826 -15689744 + (A)n Simple_repeat Simple_repeat 1 21 0 190 258 15 45 chr21 19218273 19218339 -15689231 + L2 LINE L2 3206 3269 -3 365 271 8 16 chr21 19219244 19219366 -15688204 - LTR67 LTR ERVL -9 548 428 22 0 0 0 chr21 19221633 19221655 -15685915 + AT_rich Low_complexity Low_complexity 1 22 0 2067 81 62 11 chr21 19221791 19222064 -15685506 - AluSx SINE Alu -25 287 1 366 278 56 35 chr21 19222832 19223030 -15684540 - L1ME4a LINE L1 -189 5932 5731 404 190 0 30 chr21 19223363 19223463 -15684107 + (TG)n Simple_repeat Simple_repeat 2 98 0 210 37 0 0 chr21 19223475 19223502 -15684068 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr21 19223576 19223605 -15683965 + AT_rich Low_complexity Low_complexity 1 29 0 289 275 22 34 chr21 19224149 19224327 -15683243 + (TATATG)n Simple_repeat Simple_repeat 3 178 0 310 272 109 14 chr21 19225280 19225427 -15682143 + MER5A DNA MER1_type 26 186 -3 628 220 89 24 chr21 19225441 19225609 -15681961 + MER5A DNA MER1_type 7 185 -4 621 197 0 0 chr21 19227185 19227302 -15680268 + L1MC3 LINE L1 6899 7015 -770 1316 241 76 47 chr21 19227302 19227751 -15679819 - MLT1C LTR MaLR 0 467 6 2907 196 55 64 chr21 19227751 19228500 -15679070 + L1MC3 LINE L1 7006 7749 -36 2115 116 3 3 chr21 19228500 19228801 -15678769 + AluSq SINE Alu 1 301 -12 2907 196 55 64 chr21 19228801 19228837 -15678733 + L1MC3 LINE L1 7749 7784 -1 800 223 127 15 chr21 19228883 19229080 -15678490 - MER20 DNA MER1_type 0 219 1 506 230 77 71 chr21 19229120 19229212 -15678358 + MIR SINE MIR 40 130 -132 306 50 0 0 chr21 19229212 19229252 -15678318 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 1936 139 0 0 chr21 19229252 19229532 -15678038 - AluSx SINE Alu -32 280 1 506 230 77 71 chr21 19229532 19229634 -15677936 + MIR SINE MIR 129 236 -26 1547 132 62 52 chr21 19231156 19231445 -15676125 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr21 19232799 19232821 -15674749 + AT_rich Low_complexity Low_complexity 1 22 0 194 317 81 16 chr21 19233112 19233235 -15674335 + MIR SINE MIR 107 237 -25 193 319 86 43 chr21 19233385 19233501 -15674069 - L2 LINE L2 -5 3267 3147 728 249 42 46 chr21 19235543 19235804 -15671766 - MIR SINE MIR 0 262 3 305 291 23 12 chr21 19235983 19236069 -15671501 - MIR3 SINE MIR -31 177 91 269 300 12 0 chr21 19236178 19236258 -15671312 + MIR3 SINE MIR 122 202 -6 941 159 22 95 chr21 19237192 19237290 -15670280 - MER20 DNA MER1_type -4 215 111 2924 77 14 11 chr21 19237290 19237653 -15669917 - THE1B LTR MaLR 0 364 1 941 159 22 95 chr21 19237653 19237786 -15669784 - MER20 DNA MER1_type -108 111 1 2984 147 17 23 chr21 19238430 19238900 -15668670 + MLT1C LTR MaLR 1 467 0 2532 65 0 13 chr21 19239262 19239569 -15668001 - AluY SINE Alu -7 304 2 1657 163 17 17 chr21 19240188 19240476 -15667094 + AluJo SINE Alu 1 288 -24 474 146 0 0 chr21 19240476 19240558 -15667012 + (GGGA)n Simple_repeat Simple_repeat 3 84 0 235 227 23 0 chr21 19241105 19241149 -15666421 + MER2 DNA MER2_type 1 45 -299 2110 101 10 14 chr21 19241209 19241506 -15666064 + AluSc SINE Alu 1 296 -13 920 101 7 7 chr21 19241507 19241645 -15665925 + MER2 DNA MER2_type 73 210 -134 1290 179 30 27 chr21 19241672 19241935 -15665635 - AluJo SINE Alu -6 306 43 546 272 88 53 chr21 19242093 19242545 -15665025 + L1MDa LINE L1 1262 1729 -4811 387 318 47 33 chr21 19242765 19242979 -15664591 + MLT1J LTR MaLR 1 217 -294 2104 115 4 0 chr21 19243695 19243974 -15663596 + AluSq SINE Alu 1 280 -33 318 148 0 0 chr21 19243975 19244029 -15663541 + (GGAA)n Simple_repeat Simple_repeat 3 56 0 1675 194 62 24 chr21 19244259 19244631 -15662939 - MLT1B LTR MaLR -4 386 1 270 0 0 0 chr21 19245714 19245744 -15661826 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 1821 168 0 14 chr21 19245750 19246035 -15661535 - AluJo SINE Alu -30 282 2 2064 147 3 0 chr21 19246128 19246434 -15661136 + AluSx SINE Alu 1 307 -5 209 260 0 20 chr21 19246615 19246665 -15660905 + MIR3 SINE MIR 109 157 -51 201 237 17 85 chr21 19246767 19246826 -15660744 + L2 LINE L2 3180 3234 -79 867 219 121 94 chr21 19246832 19247247 -15660323 - MLT1A1 LTR MaLR -1 414 1 294 242 140 51 chr21 19247969 19248116 -15659454 + MIR SINE MIR 81 251 -11 278 141 0 16 chr21 19248446 19248510 -15659060 + (TAA)n Simple_repeat Simple_repeat 3 65 0 2430 94 0 0 chr21 19248898 19249205 -15658365 - AluSc SINE Alu -2 307 1 1720 162 3 13 chr21 19251474 19251777 -15655793 - AluJo SINE Alu -12 300 1 207 114 0 0 chr21 19252402 19252437 -15655133 + (T)n Simple_repeat Simple_repeat 1 35 0 2509 182 9 85 chr21 19253193 19253770 -15653800 + MER74A LTR ERVL 26 558 0 1794 189 42 40 chr21 19254970 19255430 -15652140 + LTR2B LTR ERV1 1 490 0 310 185 0 0 chr21 19255779 19255833 -15651737 + L1MC4 LINE L1 6650 6703 -1339 209 215 0 15 chr21 19255876 19255941 -15651629 + (TA)n Simple_repeat Simple_repeat 1 64 0 21 36 0 0 chr21 19256220 19256248 -15651322 + AT_rich Low_complexity Low_complexity 1 28 0 577 191 42 42 chr21 19256338 19256527 -15651043 + L1M3 LINE L1 2821 3009 -3137 22 0 0 0 chr21 19257189 19257211 -15650359 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr21 19257276 19257305 -15650265 + AT_rich Low_complexity Low_complexity 1 29 0 408 261 77 58 chr21 19257619 19257945 -15649625 + L1M3 LINE L1 4488 4819 -1327 427 349 28 5 chr21 19257947 19258165 -15649405 + L1M3 LINE L1 4853 5075 -1071 822 158 15 15 chr21 19258181 19258314 -15649256 - FLAM_C SINE Alu 0 133 1 228 330 46 29 chr21 19258490 19258729 -15648841 + L1M3 LINE L1 5272 5514 -657 590 283 57 15 chr21 19258801 19259066 -15648504 + L1ME3A LINE L1 5676 5951 -219 2410 84 0 0 chr21 19259127 19259426 -15648144 + AluY SINE Alu 1 299 -12 2440 62 0 39 chr21 19259711 19260019 -15647551 + AluY SINE Alu 1 296 -15 2365 86 0 13 chr21 19261276 19261591 -15645979 - AluY SINE Alu 0 311 1 2286 218 85 43 chr21 19261892 19262335 -15645235 - MLT1E2 LTR MaLR 0 626 150 2307 63 42 3 chr21 19262335 19262621 -15644949 + AluY SINE Alu 1 297 -14 2286 218 85 43 chr21 19262621 19262778 -15644792 - MLT1E2 LTR MaLR -476 150 1 201 250 28 83 chr21 19262953 19263025 -15644545 + L2 LINE L2 3205 3272 0 227 330 75 0 chr21 19263010 19263104 -15644466 + L3 LINE CR1 563 663 -914 21 0 0 0 chr21 19263970 19263991 -15643579 + AT_rich Low_complexity Low_complexity 1 21 0 526 224 86 73 chr21 19264500 19264792 -15642778 + MLT1J2 LTR MaLR 118 449 -1 2021 146 20 0 chr21 19265082 19265383 -15642187 + AluSx SINE Alu 1 307 -5 1491 225 28 5 chr21 19266831 19267241 -15640329 - L1ME3A LINE L1 -1 6161 5734 1508 219 0 3 chr21 19267740 19268037 -15639533 + L1MB1 LINE L1 5872 6167 -1 274 329 0 0 chr21 19268958 19269043 -15638527 - L2 LINE L2 0 3313 3229 318 303 148 8 chr21 19269797 19269919 -15637651 - MIR3 SINE MIR -50 158 20 3245 178 22 83 chr21 19270459 19270717 -15636853 + LTR8 LTR ERV1 1 273 -418 1726 100 66 4 chr21 19270717 19270958 -15636612 + AluSx SINE Alu 43 298 -14 3245 178 22 83 chr21 19270958 19271435 -15636135 + LTR8 LTR ERV1 273 691 0 25 0 0 0 chr21 19272646 19272671 -15634899 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr21 19272787 19272814 -15634756 + (TG)n Simple_repeat Simple_repeat 2 28 0 309 281 52 0 chr21 19272847 19272943 -15634627 - L1MC4 LINE L1 -1327 6715 6615 607 259 135 0 chr21 19273880 19274065 -15633505 - LTR16A LTR ERVL -184 266 57 2025 119 147 44 chr21 19274192 19274538 -15633032 + MSTA LTR MaLR 1 393 -35 2064 115 0 18 chr21 19274538 19274824 -15632746 - AluSg SINE Alu -13 297 17 2025 119 147 44 chr21 19274824 19274865 -15632705 + MSTA LTR MaLR 393 428 0 1181 254 38 30 chr21 19274880 19275277 -15632293 + LTR16C LTR ERVL 88 487 -4 1911 207 3 3 chr21 19275446 19275799 -15631771 - MLT1A1 LTR MaLR -12 353 1 2273 172 30 0 chr21 19275929 19276330 -15631240 - MER67C LTR ERV1 0 710 298 607 136 91 45 chr21 19276324 19276420 -15631150 - MER67C LTR ERV1 -572 138 33 2047 107 11 4 chr21 19276420 19276701 -15630869 - AluSq SINE Alu -10 303 21 607 136 91 45 chr21 19276701 19276736 -15630834 - MER67C LTR ERV1 -677 33 1 445 305 76 25 chr21 19276768 19276965 -15630605 - L2 LINE L2 -419 2895 2689 917 243 24 28 chr21 19277735 19277986 -15629584 + MLT2D LTR ERVL 1 250 -164 1117 206 31 72 chr21 19277986 19278278 -15629292 + MLT2B1 LTR ERVL 241 520 0 2522 169 26 77 chr21 19278830 19279375 -15628195 - MLT2B1 LTR ERVL 0 520 4 1913 137 37 17 chr21 19279680 19279979 -15627591 + AluSg SINE Alu 1 305 -5 2500 84 3 0 chr21 19280094 19280405 -15627165 + AluSx SINE Alu 1 312 0 1888 152 10 0 chr21 19281338 19281634 -15625936 - AluSx SINE Alu -13 299 1 379 252 27 38 chr21 19281674 19281796 -15625774 - MIR SINE MIR -73 135 17 459 265 70 77 chr21 19282651 19282969 -15624601 + L2 LINE L2 2784 3099 -214 1870 162 14 0 chr21 19283236 19283532 -15624038 - AluJb SINE Alu -12 300 1 376 193 59 104 chr21 19283683 19283818 -15623752 + MLT1B LTR MaLR 1 129 -245 2251 81 0 39 chr21 19283862 19284171 -15623399 + AluY SINE Alu 1 297 -14 1130 203 14 9 chr21 19284187 19284409 -15623161 + MLT1B LTR MaLR 168 390 0 212 222 181 0 chr21 19284530 19284602 -15622968 + MIR SINE MIR 58 142 -120 1111 247 110 48 chr21 19285346 19285719 -15621851 - MER76 LTR ERV -292 396 1 414 0 0 0 chr21 19286114 19286160 -15621410 + (TG)n Simple_repeat Simple_repeat 2 47 0 1711 191 55 47 chr21 19286247 19286468 -15621102 - MLT1B LTR MaLR 0 390 163 1978 143 7 3 chr21 19286468 19286769 -15620801 - AluSx SINE Alu -10 302 1 1711 191 55 47 chr21 19286769 19286930 -15620640 - MLT1B LTR MaLR -227 163 5 2728 106 3 16 chr21 19287608 19287977 -15619593 - THE1B LTR MaLR 0 364 1 2620 121 6 6 chr21 19289210 19289574 -15617996 - THE1B LTR MaLR 0 364 1 1374 198 109 15 chr21 19289793 19290131 -15617439 - L1ME2 LINE L1 -9 6155 5786 21 0 0 0 chr21 19290514 19290535 -15617035 + AT_rich Low_complexity Low_complexity 1 21 0 30 0 0 0 chr21 19290685 19290715 -15616855 + AT_rich Low_complexity Low_complexity 1 30 0 2430 91 3 0 chr21 19291553 19291862 -15615708 + AluY SINE Alu 1 310 -1 889 172 52 104 chr21 19293310 19293560 -15614010 - L1ME2 LINE L1 -371 5793 5557 2397 86 10 0 chr21 19294200 19294504 -15613066 - AluSq SINE Alu -6 307 1 497 217 69 63 chr21 19294872 19295061 -15612509 + MLT1G LTR MaLR 390 579 -11 2411 289 74 25 chr21 19295247 19296032 -15611538 + ERVL-E LTR ERVL 3871 4693 -1071 251 254 151 16 chr21 19296231 19296357 -15611213 + ERVL-E LTR ERVL 5438 5580 -184 5907 40 5 0 chr21 19296373 19297039 -15610531 + L1PA5 LINE L1 5485 6153 -1 261 214 71 36 chr21 19297148 19297232 -15610338 + Ricksha DNA DNA 286 372 -1674 728 273 23 17 chr21 19297268 19297444 -15610126 + MLT2E LTR ERVL 96 272 -356 1232 199 23 15 chr21 19297473 19297735 -15609835 + MLT2D LTR ERVL 83 346 -68 544 160 28 14 chr21 19297736 19297880 -15609690 + (TAGA)n Simple_repeat Simple_repeat 4 149 0 868 280 64 14 chr21 19297948 19298230 -15609340 + MLT2E LTR ERVL 333 628 0 254 271 0 0 chr21 19298337 19298396 -15609174 - L2 LINE L2 0 3272 3214 389 237 53 18 chr21 19298448 19298562 -15609008 + L3 LINE CR1 1317 1434 -143 321 278 137 8 chr21 19298825 19299017 -15608553 - MIR SINE MIR -24 238 19 1694 115 119 11 chr21 19299067 19299336 -15608234 + AluSg1 SINE Alu 1 298 -11 422 299 48 39 chr21 19299473 19299680 -15607890 - MIR SINE MIR -1 261 53 1955 158 0 13 chr21 19301615 19301925 -15605645 + AluSx SINE Alu 1 306 -6 2323 151 82 47 chr21 19303867 19304352 -15603218 - MLT1D LTR MaLR -2 503 2 348 43 0 0 chr21 19304363 19304409 -15603161 + (CA)n Simple_repeat Simple_repeat 1 46 0 1013 138 0 0 chr21 19304765 19304910 -15602660 + FRAM SINE Alu 18 162 -14 210 173 40 13 chr21 19305060 19305135 -15602435 + GA-rich Low_complexity Low_complexity 3 79 0 1096 248 42 75 chr21 19307714 19307743 -15599827 + MLT1C LTR MaLR 5 33 -434 1743 195 0 7 chr21 19307743 19308051 -15599519 + AluJo SINE Alu 1 306 -6 1096 248 42 75 chr21 19308051 19308500 -15599070 + MLT1C LTR MaLR 33 467 0 885 114 0 43 chr21 19309460 19309600 -15597970 - FLAM_C SINE Alu -1 142 9 298 263 0 86 chr21 19309609 19309761 -15597809 - MIR SINE MIR -50 212 74 1277 231 123 29 chr21 19310520 19310862 -15596708 + MLT1E LTR MaLR 150 523 -70 2138 83 4 0 chr21 19311362 19311627 -15595943 + AluY SINE Alu 1 266 -45 436 190 331 0 chr21 19311681 19311823 -15595747 + MER5A DNA MER1_type 1 189 0 2113 111 13 25 chr21 19312460 19312776 -15594794 + AluSx SINE Alu 1 312 0 398 278 45 57 chr21 19312801 19312977 -15594593 - MER5A DNA MER1_type -6 183 10 2115 59 279 190 chr21 19313184 19313805 -15593765 - LTR12 LTR ERV1 0 1523 14 1284 165 52 22 chr21 19313974 19314204 -15593366 + AluJo SINE Alu 1 237 -75 22 0 0 0 chr21 19314213 19314235 -15593335 + AT_rich Low_complexity Low_complexity 1 22 0 2211 92 3 7 chr21 19314274 19314567 -15593003 - AluSc SINE Alu -17 292 1 476 231 39 45 chr21 19314593 19314749 -15592821 - MIR SINE MIR -79 183 29 342 234 23 8 chr21 19315688 19315816 -15591754 + GA-rich Low_complexity Low_complexity 3 132 0 2217 125 0 0 chr21 19316161 19316472 -15591098 + AluSx SINE Alu 1 311 -1 206 119 48 24 chr21 19316576 19316618 -15590952 + GA-rich Low_complexity Low_complexity 5 47 0 527 43 14 0 chr21 19316620 19316690 -15590880 + (GA)n Simple_repeat Simple_repeat 2 72 0 1724 181 6 29 chr21 19317440 19317788 -15589782 - L1MB4 LINE L1 -2 6178 5839 4099 109 96 2 chr21 19317788 19318401 -15589169 - LTR12 LTR ERV1 0 671 1 824 77 9 0 chr21 19318401 19318527 -15589043 - LTR12 LTR ERV1 -552 1472 16 757 198 42 49 chr21 19318612 19318900 -15588670 - pTR5 LTR ERV1 -1410 1028 743 771 184 58 68 chr21 19318900 19318928 -15588642 - L1MB4 LINE L1 -338 5842 5815 2041 94 72 0 chr21 19318928 19319204 -15588366 + AluSx SINE Alu 5 300 -12 771 184 58 68 chr21 19319204 19319382 -15588188 - L1MB4 LINE L1 -365 5815 5638 549 241 38 0 chr21 19319402 19319535 -15588035 - FLAM_A SINE Alu -4 138 1 557 210 0 0 chr21 19319580 19319699 -15587871 - L1MB4 LINE L1 -574 5609 5491 385 162 88 0 chr21 19319706 19319786 -15587784 - L1MB2 LINE L1 -117 6054 5968 4456 170 30 4 chr21 19319780 19320838 -15586732 - L1MB2 LINE L1 -115 6056 4980 27 49 0 0 chr21 19321334 19321375 -15586195 + AT_rich Low_complexity Low_complexity 1 41 0 9354 160 36 30 chr21 19321393 19322015 -15585555 - L1MA4 LINE L1 -5 6295 5678 2161 128 10 0 chr21 19322015 19322319 -15585251 - AluSx SINE Alu -5 307 1 9354 160 36 30 chr21 19322319 19323349 -15584221 - L1MA4 LINE L1 -622 5678 4655 1932 180 72 36 chr21 19323349 19323766 -15583804 + MSTB1 LTR MaLR 1 432 0 9354 160 36 30 chr21 19323766 19323822 -15583748 - L1MA4 LINE L1 -1645 4655 4601 2170 151 11 30 chr21 19323822 19324193 -15583377 + THE1B LTR MaLR 1 364 0 9354 160 36 30 chr21 19324193 19324430 -15583140 - L1MA4 LINE L1 -1699 4601 4367 1473 199 34 10 chr21 19324430 19324727 -15582843 + AluJb SINE Alu 1 304 -8 9354 160 36 30 chr21 19324727 19325711 -15581859 - L1MA4 LINE L1 -1933 4367 3749 924 121 0 0 chr21 19325711 19325852 -15581718 - L1PA15 LINE L1 -1 6164 6024 9354 160 36 30 chr21 19325852 19325958 -15581612 - L1MA4 LINE L1 -2551 3749 3645 216 200 0 0 chr21 19326452 19326492 -15581078 + (CATA)n Simple_repeat Simple_repeat 2 41 0 2401 73 0 7 chr21 19326767 19327069 -15580501 + AluY SINE Alu 1 300 -11 3408 97 2 2 chr21 19327117 19327570 -15580000 - MLT2A2 LTR ERVL 0 453 1 377 255 152 22 chr21 19327986 19328020 -15579550 - L2 LINE L2 -744 2570 2542 2311 111 3 0 chr21 19328020 19328327 -15579243 - AluSx SINE Alu -4 308 1 377 255 152 22 chr21 19328327 19328523 -15579047 - L2 LINE L2 -772 2542 2310 463 233 50 0 chr21 19328717 19328837 -15578733 + MIR3 SINE MIR 77 202 -6 217 229 16 0 chr21 19329182 19329243 -15578327 + MER5B DNA MER1_type 22 83 -95 2296 138 56 29 chr21 19330024 19330063 -15577507 - MSTB LTR MaLR -1 425 389 2347 113 3 0 chr21 19330063 19330372 -15577198 + AluSg SINE Alu 1 310 0 2296 138 56 29 chr21 19330372 19330746 -15576824 - MSTB LTR MaLR -37 389 1 1487 142 24 132 chr21 19331095 19331427 -15576143 + AluJo SINE Alu 1 296 -6 395 201 13 74 chr21 19331709 19331858 -15575712 - MER39 LTR ERV1 -63 644 505 1171 103 29 6 chr21 19331860 19332035 -15575535 - LTR1B LTR ERV1 -640 186 8 407 211 0 83 chr21 19332389 19332424 -15575146 - MER5B DNA MER1_type -21 157 121 2609 154 14 23 chr21 19332424 19332859 -15574711 - Tigger2a DNA MER2_type 0 434 4 407 211 0 83 chr21 19332859 19332956 -15574614 - MER5B DNA MER1_type -57 121 36 638 151 8 32 chr21 19333952 19334047 -15573523 - MSTD LTR MaLR 0 396 305 3199 139 12 8 chr21 19334047 19334500 -15573070 + MER84 LTR ERVI 1 458 -49 2381 124 17 11 chr21 19334500 19334862 -15572708 - THE1B LTR MaLR 0 364 1 3199 139 12 8 chr21 19334862 19334911 -15572659 + MER84 LTR ERVI 458 505 -2 506 225 75 17 chr21 19334911 19335022 -15572548 - MSTD LTR MaLR -85 311 194 3190 155 47 34 chr21 19335038 19335511 -15572059 - LTR29 LTR ERV1 0 622 138 2422 92 49 9 chr21 19335511 19335858 -15571712 - THE1B LTR MaLR -3 361 1 3190 155 47 34 chr21 19335858 19335998 -15571572 - LTR29 LTR ERV1 -484 138 1 519 180 0 0 chr21 19336014 19336103 -15571467 - MSTD LTR MaLR -307 89 1 255 111 44 22 chr21 19336165 19336210 -15571360 + MSTA LTR MaLR 1 46 -382 2536 129 3 3 chr21 19336210 19336574 -15570996 - THE1B LTR MaLR 0 364 1 8588 131 34 45 chr21 19336574 19338107 -15569463 - THE1B-int LTR MaLR 0 1580 65 857 122 18 14 chr21 19338162 19338350 -15569220 + MSTA LTR MaLR 178 428 0 2249 116 0 0 chr21 19338821 19339138 -15568432 - AluSx SINE Alu 0 312 1 2262 150 101 43 chr21 19339143 19339636 -15567934 + MER34B LTR ERV1 35 556 -9 2449 79 3 0 chr21 19340123 19340426 -15567144 + AluSg SINE Alu 1 304 -6 360 308 49 14 chr21 19340804 19340947 -15566623 - MIR SINE MIR -95 167 20 654 185 154 107 chr21 19341325 19341644 -15565926 + MLT1H LTR MaLR 216 549 0 442 229 124 0 chr21 19341648 19341801 -15565769 - Charlie2 DNA MER1_type -138 2724 2553 1707 174 11 7 chr21 19342003 19342284 -15565286 + AluJo SINE Alu 1 282 -30 21 0 0 0 chr21 19342312 19342333 -15565237 + AT_rich Low_complexity Low_complexity 1 21 0 249 83 0 0 chr21 19342492 19342528 -15565042 + (TA)n Simple_repeat Simple_repeat 1 36 0 333 0 0 0 chr21 19342527 19342564 -15565006 + (GA)n Simple_repeat Simple_repeat 2 38 0 1613 200 76 22 chr21 19342571 19342981 -15564589 - Charlie2 DNA MER1_type -571 2291 1860 732 272 91 25 chr21 19343000 19343243 -15564327 - Charlie2 DNA MER1_type -2477 305 47 2134 75 26 0 chr21 19343855 19344123 -15563447 + AluSc SINE Alu 21 295 -14 269 300 66 55 chr21 19344308 19344655 -15562915 + L1ME4a LINE L1 5574 5924 -197 1623 108 58 8 chr21 19345216 19345457 -15562113 + AluSx SINE Alu 21 273 -39 321 82 0 0 chr21 19345457 19345506 -15562064 + (GA)n Simple_repeat Simple_repeat 2 50 0 2126 111 7 17 chr21 19346019 19346316 -15561254 - AluSx SINE Alu -18 294 1 2327 90 0 7 chr21 19346616 19346917 -15560653 + AluSg SINE Alu 1 299 -11 1358 164 42 8 chr21 19347678 19347916 -15559654 - AluJo SINE Alu -18 294 49 25 0 0 0 chr21 19349241 19349266 -15558304 + AT_rich Low_complexity Low_complexity 1 25 0 2261 121 0 0 chr21 19355707 19356014 -15551556 - AluSx SINE Alu -4 308 2 378 106 45 15 chr21 19356100 19356166 -15551404 - MADE1 DNA Mariner 0 80 13 2076 104 7 0 chr21 19356428 19356741 -15550829 + AluY SINE Alu 1 315 0 2425 92 3 0 chr21 19357553 19357856 -15549714 - AluSg SINE Alu -6 304 1 1608 190 43 4 chr21 19359537 19359816 -15547754 + AluJo SINE Alu 1 290 -22 274 77 0 39 chr21 19360115 19360167 -15547403 + (TTCA)n Simple_repeat Simple_repeat 1 50 0 1073 152 16 5 chr21 19361853 19362169 -15545401 + MLT1A1 LTR MaLR 1 365 0 289 103 76 13 chr21 19363869 19363925 -15543645 + MER58 DNA MER1_type 2352 2404 -16 2319 101 0 10 chr21 19363928 19364236 -15543334 + AluSc SINE Alu 1 305 -4 2327 116 0 0 chr21 19364648 19364951 -15542619 - AluSx SINE Alu -9 303 1 702 80 35 0 chr21 19366312 19366425 -15541145 + L1MA8 LINE L1 6165 6281 -10 364 203 43 45 chr21 19370031 19370263 -15537307 + LTR37A LTR ERV1 167 426 0 738 183 7 7 chr21 19370573 19370715 -15536855 - L1MA5A LINE L1 -4 6293 6152 276 300 0 0 chr21 19370859 19370939 -15536631 - L2 LINE L2 -1 3312 3233 28 0 0 0 chr21 19371175 19371203 -15536367 + AT_rich Low_complexity Low_complexity 1 28 0 629 186 85 0 chr21 19371936 19372065 -15535505 + MER74B LTR ERVL 58 197 -425 917 191 68 5 chr21 19372182 19372402 -15535168 + MER74A LTR ERVL 322 555 -3 2041 118 3 43 chr21 19372477 19372799 -15534771 + AluSx SINE Alu 2 310 -2 372 170 50 40 chr21 19373250 19373350 -15534220 + MER21A LTR ERV1 475 575 -356 203 229 21 0 chr21 19373578 19373626 -15533944 + (TA)n Simple_repeat Simple_repeat 2 50 0 40 101 0 0 chr21 19373638 19373776 -15533794 + AT_rich Low_complexity Low_complexity 1 138 0 2112 131 3 22 chr21 19373860 19374174 -15533396 - AluSx SINE Alu -4 308 1 2409 99 0 3 chr21 19374686 19374998 -15532572 + AluSx SINE Alu 1 311 -1 1309 158 0 10 chr21 19375924 19376133 -15531437 - MER6B DNA MER2_type 0 210 4 1542 90 5 5 chr21 19376315 19376516 -15531054 + AluSq SINE Alu 25 225 -88 198 0 0 0 chr21 19376544 19376566 -15531004 + (A)n Simple_repeat Simple_repeat 1 22 0 2523 81 0 0 chr21 19376569 19376876 -15530694 + AluSx SINE Alu 1 307 -5 420 81 69 35 chr21 19377773 19377946 -15529624 + (TA)n Simple_repeat Simple_repeat 2 180 0 216 0 0 0 chr21 19378145 19378169 -15529401 + (A)n Simple_repeat Simple_repeat 1 24 0 2177 109 106 6 chr21 19378348 19378679 -15528891 + THE1B LTR MaLR 1 364 0 1284 177 35 0 chr21 19379373 19379599 -15527971 - MER46A DNA MER2_type -2 234 1 247 79 26 0 chr21 19379967 19380005 -15527565 + L1MC4a LINE L1 6221 6259 -1549 237 271 14 14 chr21 19380113 19380183 -15527387 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 770 143 0 8 chr21 19380197 19380323 -15527247 + L1MC4 LINE L1 7918 8042 0 2969 228 39 41 chr21 19380555 19381883 -15525687 + L1ME1 LINE L1 4831 6161 -5 2342 116 0 0 chr21 19382162 19382473 -15525097 - AluSq SINE Alu -2 311 1 965 181 112 19 chr21 19383446 19383651 -15523919 - MER58A DNA MER1_type 0 224 1 1834 153 7 17 chr21 19383917 19384218 -15523352 + AluJb SINE Alu 1 298 -14 559 213 8 16 chr21 19384822 19384944 -15522626 - MIR SINE MIR -129 133 13 644 191 20 14 chr21 19385412 19385559 -15522011 + MER5B DNA MER1_type 1 148 -30 2461 67 10 0 chr21 19385641 19385941 -15521629 - AluY SINE Alu -8 303 1 289 164 0 18 chr21 19386570 19386625 -15520945 + L1MB8 LINE L1 6125 6178 0 4926 162 27 4 chr21 19387140 19387983 -15519587 - MER6 DNA MER2_type 0 865 3 387 0 0 0 chr21 19391175 19391218 -15516352 + (TG)n Simple_repeat Simple_repeat 2 44 0 780 255 94 4 chr21 19392234 19392469 -15515101 + MIR SINE MIR 7 262 0 1062 83 0 0 chr21 19392782 19392914 -15514656 - AluSg/x SINE Alu -13 297 166 247 302 56 40 chr21 19393884 19394010 -15513560 - MIR SINE MIR -71 191 64 2666 43 0 0 chr21 19394248 19394547 -15513023 + AluY SINE Alu 1 299 -12 35 54 0 14 chr21 19395390 19395426 -15512144 + AT_rich Low_complexity Low_complexity 1 36 -37 1737 191 35 42 chr21 19395426 19395803 -15511767 + MLT1A2 LTR MaLR 1 374 0 35 54 0 14 chr21 19395803 19395840 -15511730 + AT_rich Low_complexity Low_complexity 36 73 0 228 253 0 13 chr21 19395846 19395921 -15511649 + (TTAA)n Simple_repeat Simple_repeat 3 76 0 380 250 167 26 chr21 19396170 19396326 -15511244 - MER5A DNA MER1_type -2 187 10 2157 110 23 3 chr21 19397223 19397522 -15510048 - AluSg SINE Alu -5 305 1 337 222 111 9 chr21 19397583 19397691 -15509879 + L1MEd LINE L1 54 172 -5947 302 233 147 68 chr21 19397799 19397962 -15509608 - MER20B DNA MER1_type -607 177 2 354 274 33 98 chr21 19397967 19398182 -15509388 + L1MEd LINE L1 243 443 -5676 2192 121 3 0 chr21 19398225 19398531 -15509039 - AluSx SINE Alu -5 307 1 2325 95 0 0 chr21 19398543 19398839 -15508731 - AluY SINE Alu -15 296 1 2139 124 0 3 chr21 19399150 19399474 -15508096 + AluSx SINE Alu 1 312 0 231 273 65 45 chr21 19399647 19399801 -15507769 + L1M4 LINE L1 2857 3013 -4552 343 261 15 23 chr21 19400617 19400747 -15506823 + L1M4 LINE L1 6061 6189 -1376 2441 94 0 0 chr21 19400895 19401202 -15506368 + AluSg SINE Alu 1 307 -3 894 303 43 8 chr21 19401258 19401657 -15505913 + L1M4 LINE L1 6302 6714 -851 502 287 66 50 chr21 19401882 19402199 -15505371 + MLT1H LTR MaLR 171 492 -57 849 194 12 41 chr21 19402861 19403031 -15504539 + FRAM SINE Alu 1 165 -1 366 195 0 0 chr21 19403635 19403717 -15503853 + GA-rich Low_complexity Low_complexity 3 84 0 2262 99 10 3 chr21 19404782 19405085 -15502485 - AluSq SINE Alu -8 305 1 1792 152 7 14 chr21 19405091 19405386 -15502184 - AluJb SINE Alu -19 293 1 2287 89 0 0 chr21 19405746 19406038 -15501532 - AluSx SINE Alu -20 292 1 861 222 41 5 chr21 19406157 19406351 -15501219 + MER20 DNA MER1_type 1 201 -18 267 262 74 25 chr21 19406948 19407070 -15500500 + MER5B DNA MER1_type 1 128 -50 747 207 52 23 chr21 19407268 19407442 -15500128 - MIR SINE MIR -10 252 74 2135 107 0 0 chr21 19407464 19407744 -15499826 + AluSx SINE Alu 1 280 -32 2450 69 7 0 chr21 19408440 19408745 -15498825 - AluY SINE Alu -4 307 1 2357 75 10 0 chr21 19408898 19409190 -15498380 - AluSp SINE Alu -18 295 1 2206 122 0 0 chr21 19409244 19409555 -15498015 + AluSq SINE Alu 1 311 -2 195 243 0 0 chr21 19409627 19409664 -15497906 + MIR SINE MIR 220 256 -6 2450 83 0 0 chr21 19410042 19410343 -15497227 - AluSx SINE Alu -9 303 3 1135 232 14 0 chr21 19410442 19410662 -15496908 - MER58A DNA MER1_type 0 224 2 212 296 82 25 chr21 19411501 19411660 -15495910 - L2 LINE L2 -155 3117 2950 219 139 0 0 chr21 19411877 19411913 -15495657 + (TTC)n Simple_repeat Simple_repeat 2 37 0 1922 140 23 7 chr21 19411915 19412222 -15495348 - AluJo SINE Alu 0 312 1 1903 68 25 0 chr21 19413836 19414071 -15493499 - AluSx SINE Alu -14 298 58 862 156 84 24 chr21 19414074 19414241 -15493329 - AluSg/x SINE Alu -2 308 132 2286 105 0 0 chr21 19414241 19414545 -15493025 - AluSq SINE Alu -9 304 1 225 184 0 0 chr21 19415415 19415453 -15492117 + MLT1C LTR MaLR 53 90 -377 244 196 29 43 chr21 19415474 19415612 -15491958 + (TAA)n Simple_repeat Simple_repeat 2 137 0 285 218 40 8 chr21 19415524 19415648 -15491922 + (TA)n Simple_repeat Simple_repeat 1 128 0 275 156 34 34 chr21 19415648 19415827 -15491743 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 1406 241 31 11 chr21 19415859 19416211 -15491359 + MLT1C LTR MaLR 108 466 -1 1473 151 0 40 chr21 19416666 19416944 -15490626 + AluJo SINE Alu 39 305 -7 1630 193 3 10 chr21 19418707 19419012 -15488558 - AluJo SINE Alu -9 303 1 2277 132 0 0 chr21 19419183 19419493 -15488077 - AluSx SINE Alu -2 310 1 1868 134 0 23 chr21 19420261 19420560 -15487010 + AluJo SINE Alu 1 292 -20 2150 118 20 0 chr21 19421295 19421592 -15485978 - AluSc SINE Alu -6 303 1 2127 104 24 0 chr21 19422474 19422761 -15484809 + AluSx SINE Alu 1 294 -18 683 240 64 24 chr21 19422806 19423164 -15484406 + MLT1I LTR MaLR 1 409 0 2921 176 25 16 chr21 19423314 19423751 -15483819 + MER68 LTR ERV1 6 451 -111 3257 164 14 59 chr21 19423751 19424392 -15483178 + LTR9 LTR ERV1 1 612 0 2921 176 25 16 chr21 19424392 19424506 -15483064 + MER68 LTR ERV1 451 562 0 1816 146 148 29 chr21 19424658 19425103 -15482467 + LTR54B LTR ERV1 1 498 0 5927 130 27 14 chr21 19426004 19426438 -15481132 + L1PA16 LINE L1 5080 5507 -659 2203 112 3 28 chr21 19426438 19426758 -15480812 - AluSx SINE Alu 0 312 1 5927 130 27 14 chr21 19426758 19427389 -15480181 + L1PA16 LINE L1 5507 6157 -9 21 0 0 0 chr21 19427389 19427410 -15480160 + AT_rich Low_complexity Low_complexity 1 21 0 2320 53 40 20 chr21 19427506 19427807 -15479763 - AluY SINE Alu -4 307 1 372 264 102 30 chr21 19427882 19428052 -15479518 - MIR3 SINE MIR -65 143 3 2222 118 3 0 chr21 19429671 19429968 -15477602 - AluSx SINE Alu -14 298 1 210 150 0 0 chr21 19430049 19430089 -15477481 + (A)n Simple_repeat Simple_repeat 1 40 0 261 181 42 125 chr21 19430255 19430327 -15477243 + L2 LINE L2 3201 3266 -6 1128 123 6 0 chr21 19430327 19430489 -15477081 + AluSq SINE Alu 135 297 -16 1228 198 4 17 chr21 19430492 19430730 -15476840 + Charlie4a DNA MER1_type 71 305 -203 676 209 80 20 chr21 19430764 19430965 -15476605 + Charlie4a DNA MER1_type 292 504 -4 576 268 7 13 chr21 19431598 19431751 -15475819 + L1ME1 LINE L1 6010 6161 -5 1768 154 0 57 chr21 19432408 19432726 -15474844 + AluJo SINE Alu 1 300 -12 2326 81 0 0 chr21 19433253 19433561 -15474009 - AluSq SINE Alu 0 308 1 595 254 72 34 chr21 19434326 19434562 -15473008 + L1MC5 LINE L1 7685 7929 -32 1798 158 9 25 chr21 19435822 19436139 -15471431 + AluJb SINE Alu 1 312 0 984 102 0 0 chr21 19437899 19438027 -15469543 - AluSq/x SINE Alu -184 129 2 372 305 32 19 chr21 19439773 19439927 -15467643 + L1ME4a LINE L1 5946 6101 -20 1293 39 25 4 chr21 19440673 19440953 -15466617 + (GAAA)n Simple_repeat Simple_repeat 1 286 0 21 0 0 0 chr21 19441123 19441144 -15466426 + AT_rich Low_complexity Low_complexity 1 21 0 2185 76 40 27 chr21 19442745 19443046 -15464524 - AluY SINE Alu -6 305 1 1422 149 111 66 chr21 19443885 19444174 -15463396 + AluJo SINE Alu 1 302 -10 1822 197 0 0 chr21 19444181 19444531 -15463039 + AluJo SINE Alu 1 350 0 810 135 8 16 chr21 19444938 19445064 -15462506 - FLAM_C SINE Alu -18 125 1 1980 107 100 4 chr21 19445447 19445728 -15461842 + AluSg SINE Alu 1 308 -2 2143 114 3 31 chr21 19446017 19446334 -15461236 + AluSx SINE Alu 1 308 -4 2215 109 3 3 chr21 19447064 19447358 -15460212 + AluSg SINE Alu 1 294 -16 2181 119 0 3 chr21 19448424 19448717 -15458853 + AluSx SINE Alu 1 292 -20 444 260 107 69 chr21 19448780 19449099 -15458471 + MLT1J LTR MaLR 120 450 -61 514 77 26 0 chr21 19449163 19449241 -15458329 - Alu SINE Alu -3 308 229 192 40 0 0 chr21 19449873 19449898 -15457672 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 805 59 0 0 chr21 19450548 19450650 -15456920 + L1PA5 LINE L1 6053 6154 0 305 206 0 0 chr21 19452780 19452843 -15454727 - L1MC4 LINE L1 -1340 6702 6640 2249 116 10 10 chr21 19452846 19453156 -15454414 - AluSx SINE Alu -2 310 1 1788 192 131 16 chr21 19454415 19454872 -15452698 + L1MB5 LINE L1 5672 6174 0 189 192 0 0 chr21 19455115 19455177 -15452393 + (TA)n Simple_repeat Simple_repeat 1 65 -8 1403 164 88 11 chr21 19455177 19455439 -15452131 - AluJb SINE Alu -30 282 1 189 192 0 0 chr21 19455439 19455449 -15452121 + (TA)n Simple_repeat Simple_repeat 64 73 0 2388 102 0 0 chr21 19457091 19457395 -15450175 - AluSx SINE Alu -8 304 1 2338 64 7 34 chr21 19458054 19458349 -15449221 - AluSc SINE Alu -22 287 1 375 78 0 0 chr21 19458359 19458410 -15449160 + (A)n Simple_repeat Simple_repeat 1 51 0 1623 251 53 65 chr21 19458410 19458860 -15448710 + L1ME3A LINE L1 5470 5909 -261 2984 71 0 8 chr21 19458860 19459238 -15448332 - THE1C LTR MaLR 0 375 1 1623 251 53 65 chr21 19459238 19459493 -15448077 + L1ME3A LINE L1 5909 6165 -5 2319 88 0 10 chr21 19459796 19460091 -15447479 - AluSx SINE Alu -20 292 1 21 0 0 0 chr21 19460412 19460433 -15447137 + AT_rich Low_complexity Low_complexity 1 21 0 1901 116 3 34 chr21 19460676 19460970 -15446600 - AluSx SINE Alu -25 287 3 910 92 8 0 chr21 19460971 19461090 -15446480 - AluSq/x SINE Alu -177 136 17 626 230 29 14 chr21 19461096 19461235 -15446335 + MLT1I LTR MaLR 28 168 -241 868 221 26 40 chr21 19461770 19461872 -15445698 + L1MB3 LINE L1 5961 6063 -120 2043 131 14 0 chr21 19461872 19462163 -15445407 + AluSx SINE Alu 1 295 -17 868 221 26 40 chr21 19462163 19462286 -15445284 + L1MB3 LINE L1 6063 6183 0 24 0 0 0 chr21 19462286 19462310 -15445260 + AT_rich Low_complexity Low_complexity 1 24 0 2141 115 11 0 chr21 19463564 19463851 -15443719 + AluSq SINE Alu 1 290 -23 588 251 55 47 chr21 19464173 19464448 -15443122 + HAL1 LINE L1 783 1059 -1448 471 194 0 0 chr21 19464453 19464556 -15443014 + GA-rich Low_complexity Low_complexity 2 104 0 1891 168 0 3 chr21 19464642 19464939 -15442631 + AluJb SINE Alu 6 301 -11 335 297 27 9 chr21 19465077 19465188 -15442382 + HAL1 LINE L1 1559 1671 -836 882 239 105 50 chr21 19465398 19465854 -15441716 + HAL1 LINE L1 2023 2503 -4 367 350 61 14 chr21 19466610 19466887 -15440683 + L3 LINE CR1 683 972 -605 186 303 32 58 chr21 19467044 19467232 -15440338 + L3 LINE CR1 1224 1406 -171 1829 162 3 26 chr21 19469265 19469568 -15438002 - AluJb SINE Alu -16 296 1 384 325 37 5 chr21 19469588 19469776 -15437794 + L1ME LINE L1 5048 5241 -905 397 264 42 21 chr21 19469790 19469934 -15437636 + L1ME LINE L1 5258 5404 -758 789 257 64 30 chr21 19469955 19470220 -15437350 + L1ME LINE L1 5474 5747 -423 1930 259 20 57 chr21 19470366 19470999 -15436571 + L1M4 LINE L1 19 628 -5914 2525 84 26 6 chr21 19470999 19471343 -15436227 + THE1B LTR MaLR 1 351 -13 2308 231 24 60 chr21 19471349 19471863 -15435707 + L1M4 LINE L1 599 1081 -5461 1680 200 7 17 chr21 19471863 19472153 -15435417 + AluJo SINE Alu 1 287 -25 2308 231 24 60 chr21 19472153 19472360 -15435210 + L1M4 LINE L1 1081 1294 -5248 1480 153 4 27 chr21 19472376 19472637 -15434933 + AluJo SINE Alu 1 255 -57 698 274 6 0 chr21 19472644 19472819 -15434751 + L1M4 LINE L1 715 890 -5652 464 124 0 34 chr21 19472940 19473029 -15434541 + AluS SINE Alu 226 311 0 802 260 73 12 chr21 19473032 19473043 -15434527 + L1M4 LINE L1 1339 1348 -5297 2278 113 3 19 chr21 19473043 19473348 -15434222 + AluSp SINE Alu 1 302 -11 301 85 17 17 chr21 19473348 19473407 -15434163 + (TA)n Simple_repeat Simple_repeat 1 59 0 2278 113 3 19 chr21 19473407 19473419 -15434151 + AluSp SINE Alu 302 313 0 802 260 73 12 chr21 19473419 19473711 -15433859 + L1M4 LINE L1 1348 2065 -4580 874 180 52 0 chr21 19473757 19474067 -15433503 + L1M4 LINE L1 1593 1946 -4700 323 235 78 0 chr21 19474165 19474267 -15433303 + L1ME3A LINE L1 6046 6155 -15 2089 131 0 3 chr21 19474581 19474871 -15432699 + AluSx SINE Alu 1 289 -23 225 0 0 0 chr21 19475511 19475536 -15432034 + (A)n Simple_repeat Simple_repeat 1 25 0 1707 168 35 3 chr21 19477177 19477462 -15430108 + AluJo SINE Alu 2 295 -17 1851 163 7 13 chr21 19477523 19477829 -15429741 - AluJo SINE Alu -3 309 6 969 169 40 0 chr21 19478095 19478272 -15429298 + MER20 DNA MER1_type 36 219 0 185 176 98 20 chr21 19479153 19479204 -15428366 - MER5A DNA MER1_type -5 184 130 2067 168 52 0 chr21 19479220 19479584 -15427986 + MLT1B LTR MaLR 8 390 0 201 255 20 0 chr21 19479584 19479635 -15427935 - MER5A DNA MER1_type -66 123 72 1843 141 0 0 chr21 19480045 19480314 -15427256 + AluJo SINE Alu 44 312 0 313 225 0 0 chr21 19481156 19481236 -15426334 + MER116 DNA Mariner 1 80 0 258 200 43 14 chr21 19481418 19481488 -15426082 + L1MB1 LINE L1 5990 6061 -107 759 135 48 8 chr21 19481500 19481626 -15425944 - FLAM_C SINE Alu -2 131 1 586 227 25 0 chr21 19481627 19481746 -15425824 + L1MB1 LINE L1 6045 6166 -2 21 0 0 0 chr21 19482797 19482818 -15424752 + AT_rich Low_complexity Low_complexity 1 21 0 1912 144 0 32 chr21 19484550 19484863 -15422707 + AluSx SINE Alu 1 303 -9 360 0 0 0 chr21 19486727 19486767 -15420803 + (CA)n Simple_repeat Simple_repeat 2 41 0 381 260 40 73 chr21 19486854 19487031 -15420539 + MIR SINE MIR 92 262 0 245 330 88 14 chr21 19488117 19488414 -15419156 + L2 LINE L2 2990 3308 -5 2268 71 54 0 chr21 19488688 19488968 -15418602 + AluSc SINE Alu 1 295 -14 1820 179 3 13 chr21 19489262 19489575 -15417995 - AluJo SINE Alu -2 310 1 953 172 25 0 chr21 19489606 19489795 -15417775 + FAM SINE Alu 1 60 0 832 189 63 5 chr21 19489886 19490076 -15417494 + Charlie1 DNA MER1_type 2342 2542 -219 981 193 19 34 chr21 19490090 19490297 -15417273 - AluJo SINE Alu -26 286 83 200 176 15 0 chr21 19490313 19490381 -15417189 + (TA)n Simple_repeat Simple_repeat 2 70 0 2005 103 0 4 chr21 19490382 19490645 -15416925 - AluSx SINE Alu -18 294 33 276 280 0 0 chr21 19490814 19490889 -15416681 + A-rich Low_complexity Low_complexity 1 75 0 2286 102 0 3 chr21 19491568 19491862 -15415708 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr21 19493073 19493105 -15414465 + AT_rich Low_complexity Low_complexity 1 32 0 228 325 44 19 chr21 19493339 19493499 -15414071 - MIR SINE MIR -50 212 49 1005 186 45 0 chr21 19494264 19494463 -15413107 - L1PA16 LINE L1 -3 6163 5956 443 214 0 20 chr21 19495141 19495239 -15412331 - FLAM_A SINE Alu -6 136 41 415 92 0 0 chr21 19495338 19495403 -15412167 - AluSp/q SINE Alu -6 307 243 261 214 157 22 chr21 19495464 19495553 -15412017 - MIR SINE MIR -113 149 49 425 236 93 36 chr21 19498310 19498450 -15409120 - L2 LINE L2 -3 3310 3163 2612 62 0 0 chr21 19499802 19500109 -15407461 - AluY SINE Alu -4 307 1 1626 87 50 0 chr21 19500758 19500977 -15406593 - MER30 DNA MER1_type 0 230 1 706 243 81 42 chr21 19500999 19501357 -15406213 + L2 LINE L2 2922 3293 -20 1743 116 119 85 chr21 19502113 19502466 -15405104 - MER47A DNA MER2_type 0 366 2 405 228 123 0 chr21 19502655 19502769 -15404801 + L1MD2 LINE L1 6194 6321 -38 204 226 0 0 chr21 19503195 19503248 -15404322 + A-rich Low_complexity Low_complexity 94 146 0 285 333 35 18 chr21 19503431 19503602 -15403968 + L1ME LINE L1 649 822 -5574 710 260 58 85 chr21 19503612 19504012 -15403558 + L1ME LINE L1 748 1136 -5273 2017 115 21 7 chr21 19504076 19504363 -15403207 + AluSx SINE Alu 2 292 -20 2064 116 0 50 chr21 19504965 19505283 -15402287 + AluSx SINE Alu 1 302 -10 4240 72 14 14 chr21 19507173 19507502 -15400068 + MER41A LTR ERV1 1 332 -222 2002 104 4 0 chr21 19507502 19507761 -15399809 + AluSq SINE Alu 1 260 -53 4240 72 14 14 chr21 19507761 19507985 -15399585 + MER41A LTR ERV1 331 554 0 201 132 0 0 chr21 19509251 19509289 -15398281 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 267 279 18 9 chr21 19509759 19509870 -15397700 + MIR SINE MIR 141 252 -10 297 155 0 0 chr21 19510128 19510186 -15397384 + (CA)n Simple_repeat Simple_repeat 1 58 0 2316 124 8 24 chr21 19510302 19510672 -15396898 + THE1B LTR MaLR 1 364 0 1301 173 9 9 chr21 19510970 19511195 -15396375 + AluJo SINE Alu 1 225 -87 213 108 0 0 chr21 19511223 19511260 -15396310 + (A)n Simple_repeat Simple_repeat 1 37 0 644 154 40 11 chr21 19511783 19511958 -15395612 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 271 132 48 24 chr21 19511969 19512052 -15395518 + (TGGA)n Simple_repeat Simple_repeat 1 85 0 2155 127 10 10 chr21 19513645 19513975 -15393595 - AluSx SINE Alu 0 312 5 1981 108 0 25 chr21 19514652 19514929 -15392641 - AluSx SINE Alu -8 304 35 2111 113 3 3 chr21 19515716 19515999 -15391571 + AluSx SINE Alu 2 284 -28 216 67 0 0 chr21 19516001 19516031 -15391539 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 727 140 0 0 chr21 19516430 19516537 -15391033 + AluJb SINE Alu 12 118 -194 21 0 0 0 chr21 19516541 19516562 -15391008 + AT_rich Low_complexity Low_complexity 1 21 0 1532 212 0 17 chr21 19516563 19516856 -15390714 + AluJo SINE Alu 1 288 -24 637 217 19 25 chr21 19517184 19517345 -15390225 + MER104 DNA MER2_type 4 163 -17 1952 184 34 3 chr21 19518413 19518767 -15388803 - MLT1A1 LTR MaLR 0 365 1 2117 132 0 40 chr21 19520489 19520814 -15386756 + AluSx SINE Alu 1 312 0 2113 117 4 0 chr21 19521645 19521960 -15385610 - AluSx SINE Alu 0 316 1 395 304 80 7 chr21 19522151 19522344 -15385226 + MIR SINE MIR 3 212 -50 2392 99 0 0 chr21 19522504 19522806 -15384764 - AluSx SINE Alu -9 303 2 2001 126 0 63 chr21 19522808 19523126 -15384444 - AluSx SINE Alu -14 298 1 951 134 0 0 chr21 19523127 19523261 -15384309 - AluSq/x SINE Alu -179 134 1 1859 176 37 23 chr21 19523262 19523615 -15383955 - MLT2D LTR ERVL -54 360 3 2509 76 0 0 chr21 19525326 19525627 -15381943 + AluY SINE Alu 1 301 -10 1984 104 56 3 chr21 19525948 19526236 -15381334 - AluSq SINE Alu -10 303 1 2331 105 0 0 chr21 19526804 19527100 -15380470 - AluY SINE Alu -15 296 1 1287 160 98 52 chr21 19527323 19527542 -15380028 + L1MB3 LINE L1 5857 6093 -90 2122 93 39 0 chr21 19527542 19527821 -15379749 - AluSx SINE Alu -22 290 1 1287 160 98 52 chr21 19527821 19527888 -15379682 + L1MB3 LINE L1 6093 6156 -27 297 0 0 0 chr21 19528873 19528906 -15378664 + (TG)n Simple_repeat Simple_repeat 1 33 0 321 174 0 0 chr21 19528912 19528981 -15378589 + GA-rich Low_complexity Low_complexity 2 70 0 347 341 8 0 chr21 19529837 19529969 -15377601 + MIR SINE MIR 26 158 -104 2323 129 91 5 chr21 19530110 19530496 -15377074 + MSTA LTR MaLR 1 419 -9 2180 116 0 0 chr21 19531695 19532014 -15375556 + AluSq SINE Alu 1 319 0 263 208 54 0 chr21 19532014 19532144 -15375426 + (TA)n Simple_repeat Simple_repeat 2 138 0 2457 103 0 0 chr21 19533833 19534145 -15373425 + AluSx SINE Alu 1 312 0 2162 98 0 42 chr21 19534824 19535131 -15372439 - AluSx SINE Alu -18 294 1 22 56 0 0 chr21 19535232 19535268 -15372302 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr21 19535550 19535576 -15371994 + AT_rich Low_complexity Low_complexity 1 26 0 390 216 11 0 chr21 19536132 19536220 -15371350 + L1MC4 LINE L1 6921 7009 -1033 1256 184 5 0 chr21 19536227 19536433 -15371137 + AluJo SINE Alu 88 294 -18 1299 240 16 56 chr21 19536435 19536963 -15370607 + L1MC4 LINE L1 7001 7666 -376 1718 161 3 61 chr21 19538088 19538399 -15369171 + AluJb SINE Alu 1 293 -19 39 92 0 0 chr21 19538546 19538655 -15368915 + AT_rich Low_complexity Low_complexity 1 109 0 180 292 92 0 chr21 19538694 19538759 -15368811 + L2 LINE L2 3232 3302 -11 2048 130 3 0 chr21 19539314 19539599 -15367971 + AluSx SINE Alu 1 286 -26 402 98 0 0 chr21 19539548 19539600 -15367970 + Alu SINE Alu 235 314 0 199 71 0 0 chr21 19539600 19539628 -15367942 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 824 268 78 56 chr21 19540218 19540613 -15366957 + MLT1J2 LTR MaLR 38 441 -9 2376 135 35 33 chr21 19541865 19542406 -15365164 + MLT2A2 LTR ERVL 1 546 -8 376 284 69 1 chr21 19542795 19542931 -15364639 - MIR SINE MIR -64 144 1 21 0 0 0 chr21 19543678 19543699 -15363871 + AT_rich Low_complexity Low_complexity 1 21 0 1890 130 7 7 chr21 19543720 19544013 -15363557 - AluSx SINE Alu -18 294 2 1873 111 9 51 chr21 19545229 19545370 -15362200 + AluSq SINE Alu 1 146 -167 2390 48 0 3 chr21 19545370 19545663 -15361907 + AluY SINE Alu 1 292 -19 1873 111 9 51 chr21 19545663 19545837 -15361733 + AluSq SINE Alu 146 303 -10 2079 87 11 0 chr21 19545837 19546124 -15361446 + AluSg SINE Alu 1 290 -20 2209 97 7 0 chr21 19547310 19547620 -15359950 + AluSp SINE Alu 1 312 -1 1851 158 0 13 chr21 19547635 19547951 -15359619 + AluSx SINE Alu 1 312 0 1813 142 7 23 chr21 19548239 19548542 -15359028 - AluSx SINE Alu -14 298 1 809 202 0 17 chr21 19548995 19549168 -15358402 - FRAM SINE Alu -9 167 1 1963 177 35 48 chr21 19549387 19549634 -15357936 - L1M3 LINE L1 -469 5711 5471 2361 75 0 7 chr21 19549634 19549940 -15357630 + AluY SINE Alu 1 304 -7 1963 177 35 48 chr21 19549940 19550127 -15357443 - L1M3 LINE L1 -709 5471 5283 1634 138 134 91 chr21 19550129 19550600 -15356970 + L1MB4 LINE L1 5690 6180 0 1978 117 14 0 chr21 19550849 19551139 -15356431 + AluSx SINE Alu 1 294 -18 818 169 0 0 chr21 19551144 19551274 -15356296 + FRAM SINE Alu 2 131 -45 2097 92 7 0 chr21 19551472 19551788 -15355782 - AluSq SINE Alu 0 318 1 1738 99 25 4 chr21 19551914 19552157 -15355413 + AluSq SINE Alu 1 248 -65 225 83 0 0 chr21 19552172 19552208 -15355362 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 362 333 33 24 chr21 19552518 19552731 -15354839 - MIR SINE MIR -32 230 16 2294 83 0 3 chr21 19553145 19553447 -15354123 + AluSc SINE Alu 1 301 -8 898 183 37 16 chr21 19553476 19553563 -15354007 + L1MC2 LINE L1 5883 5967 -377 1690 134 47 44 chr21 19553563 19553686 -15353884 + AluJo SINE Alu 1 122 -190 2161 113 0 0 chr21 19553686 19553988 -15353582 + AluSx SINE Alu 1 302 -10 1690 134 47 44 chr21 19553988 19554162 -15353408 + AluJo SINE Alu 122 299 -13 898 183 37 16 chr21 19554162 19554265 -15353305 + L1MC2 LINE L1 5967 6077 -267 779 96 0 0 chr21 19554396 19554500 -15353070 + AluSg/x SINE Alu 187 290 -20 1883 125 3 26 chr21 19555135 19555439 -15352131 + AluJb SINE Alu 1 297 -15 2131 113 0 0 chr21 19555523 19555823 -15351747 + AluSx SINE Alu 1 300 -12 2024 118 6 19 chr21 19557495 19557810 -15349760 + AluSx SINE Alu 1 311 -1 275 263 30 30 chr21 19557980 19558079 -15349491 + L2 LINE L2 2665 2763 -551 266 265 53 38 chr21 19558184 19558316 -15349254 + L2 LINE L2 2946 3079 -234 521 200 0 20 chr21 19558408 19558508 -15349062 - MER2 DNA MER2_type -10 334 237 1728 166 17 7 chr21 19558510 19558681 -15348889 - AluJb SINE Alu -14 298 121 2166 61 7 0 chr21 19558681 19558960 -15348610 - L1PA8 LINE L1 -1 6171 5891 1728 166 17 7 chr21 19558960 19559083 -15348487 - AluJb SINE Alu -191 121 1 1157 162 51 47 chr21 19559083 19559318 -15348252 - MER2 DNA MER2_type -106 238 3 2086 147 11 22 chr21 19560019 19560374 -15347196 - L1MC1 LINE L1 -16 6317 5967 997 91 103 24 chr21 19560376 19560541 -15347029 - L1MC1 LINE L1 -478 5855 5678 1816 121 4 7 chr21 19560563 19560843 -15346727 - AluSx SINE Alu -1 311 33 734 192 0 0 chr21 19563091 19563211 -15344359 + FLAM_A SINE Alu 2 121 -12 25 31 0 0 chr21 19563213 19563245 -15344325 + AT_rich Low_complexity Low_complexity 1 32 0 1734 169 0 7 chr21 19563576 19563877 -15343693 - AluJb SINE Alu -13 299 1 743 224 0 12 chr21 19564427 19564588 -15342982 - FRAM SINE Alu -7 159 1 2187 100 27 0 chr21 19565568 19565867 -15341703 + AluSx SINE Alu 1 307 -5 189 0 0 0 chr21 19566626 19566647 -15340923 + (T)n Simple_repeat Simple_repeat 1 21 0 184 321 104 9 chr21 19567057 19567163 -15340407 - L2 LINE L2 -3 3269 3154 1925 128 7 0 chr21 19567628 19567967 -15339603 - AluSx SINE Alu 0 341 1 779 165 0 0 chr21 19570680 19570801 -15336769 - FLAM_A SINE Alu -12 121 1 451 307 31 48 chr21 19571282 19571510 -15336060 - MIR SINE MIR -16 246 23 399 259 95 0 chr21 19572024 19572171 -15335399 + L1M4 LINE L1 3184 3344 -2802 759 189 0 0 chr21 19572310 19572442 -15335128 + FLAM_A SINE Alu 10 141 -1 278 214 11 0 chr21 19575562 19575651 -15331919 + (TA)n Simple_repeat Simple_repeat 2 91 0 2013 133 3 3 chr21 19575810 19576118 -15331452 + AluSx SINE Alu 5 312 0 1179 172 33 14 chr21 19576139 19576354 -15331216 + MER20 DNA MER1_type 1 219 0 3051 113 5 0 chr21 19580543 19580969 -15326601 + MSTA LTR MaLR 1 428 0 220 351 26 0 chr21 19581378 19581455 -15326115 - MIR SINE MIR -84 124 46 2151 114 0 0 chr21 19581923 19582220 -15325350 + AluSx SINE Alu 1 297 -15 1348 159 21 8 chr21 19582258 19582497 -15325073 + L1MB4 LINE L1 5683 5924 -256 759 120 0 30 chr21 19582500 19582633 -15324937 + L1MB4 LINE L1 6052 6180 0 21 0 0 0 chr21 19582680 19582701 -15324869 + AT_rich Low_complexity Low_complexity 1 21 0 1727 163 31 0 chr21 19582707 19582830 -15324740 + AluSx SINE Alu 1 119 -193 276 30 0 0 chr21 19582830 19582863 -15324707 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1727 163 31 0 chr21 19582863 19583028 -15324542 + AluSx SINE Alu 119 298 -14 321 331 54 24 chr21 19583451 19583617 -15323953 + MIR SINE MIR 13 183 -79 682 276 16 30 chr21 19583639 19583890 -15323680 - MIR SINE MIR -8 254 8 2101 117 7 0 chr21 19583940 19584274 -15323296 - AluSx SINE Alu 0 336 1 637 235 62 82 chr21 19585534 19585647 -15321923 + L2 LINE L2 3008 3122 -191 1906 122 7 13 chr21 19585647 19585989 -15321581 - AluSx SINE Alu 0 312 1 637 235 62 82 chr21 19585989 19586181 -15321389 + L2 LINE L2 3122 3307 -6 1909 176 28 8 chr21 19586551 19586909 -15320661 + MLT1A1 LTR MaLR 1 365 0 759 158 0 16 chr21 19586973 19587100 -15320470 + FLAM_C SINE Alu 3 127 -6 1800 257 67 33 chr21 19587136 19587736 -15319834 + L2 LINE L2 1017 1636 -1678 1167 230 115 13 chr21 19587757 19588140 -15319430 + L2 LINE L2 1750 2171 -1143 350 288 8 8 chr21 19588512 19588630 -15318940 + L2 LINE L2 2176 2293 -1021 1504 252 82 18 chr21 19588661 19589160 -15318410 + L2 LINE L2 2394 2924 -390 23 33 0 0 chr21 19589395 19589425 -15318145 + AT_rich Low_complexity Low_complexity 1 30 0 371 252 0 43 chr21 19589429 19589544 -15318026 + L2 LINE L2 3163 3272 0 1908 137 27 3 chr21 19589650 19589943 -15317627 + AluSg SINE Alu 1 300 -10 609 52 0 0 chr21 19589943 19590020 -15317550 + (GGAA)n Simple_repeat Simple_repeat 3 79 0 704 240 85 41 chr21 19590041 19590383 -15317187 + L1ME3A LINE L1 1548 1904 -4636 200 33 0 33 chr21 19590408 19590438 -15317132 + (TAA)n Simple_repeat Simple_repeat 3 31 0 584 273 48 31 chr21 19590834 19591123 -15316447 + L1ME3A LINE L1 5676 5969 -589 805 291 71 9 chr21 19591133 19591459 -15316111 + L1ME3A LINE L1 6018 6363 -201 411 21 0 0 chr21 19591975 19592023 -15315547 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 262 195 24 24 chr21 19592044 19592126 -15315444 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 812 211 6 30 chr21 19592149 19592315 -15315255 + FRAM SINE Alu 1 159 -17 2105 126 0 0 chr21 19592583 19592904 -15314666 - AluSx SINE Alu 0 321 1 255 276 67 45 chr21 19593144 19593278 -15314292 + MLT1K LTR MaLR 128 264 -324 477 104 0 0 chr21 19594798 19594875 -15312695 + (TGGA)n Simple_repeat Simple_repeat 4 80 0 1115 238 113 0 chr21 19594988 19595290 -15312280 - MER58B DNA MER1_type -3 338 3 2551 55 3 10 chr21 19595517 19595827 -15311743 - AluY SINE Alu -3 308 1 2141 87 52 3 chr21 19595958 19596247 -15311323 + AluSc SINE Alu 1 303 -6 2152 123 0 3 chr21 19596762 19597055 -15310515 - AluSx SINE Alu -20 292 1 198 118 0 0 chr21 19597220 19597254 -15310316 + (CAGG)n Simple_repeat Simple_repeat 1 34 0 309 197 0 0 chr21 19597262 19597328 -15310242 + GA-rich Low_complexity Low_complexity 2 67 0 2108 74 48 0 chr21 19599095 19599389 -15308181 + AluY SINE Alu 1 307 0 1460 201 47 41 chr21 19599445 19599528 -15308042 + MLT1A1 LTR MaLR 1 82 -283 2118 126 0 3 chr21 19599528 19599853 -15307717 + L1MA5 LINE L1 5977 6300 0 1460 201 47 41 chr21 19599853 19599883 -15307687 + MLT1A1 LTR MaLR 82 110 -255 1811 69 14 0 chr21 19599883 19600100 -15307470 + AluSg SINE Alu 39 258 -52 1460 201 47 41 chr21 19600100 19600348 -15307222 + MLT1A1 LTR MaLR 110 365 0 276 217 57 28 chr21 19600348 19600454 -15307116 + L1MC5 LINE L1 7539 7647 -314 212 250 0 0 chr21 19600595 19600643 -15306927 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 253 18 35 chr21 19600841 19601011 -15306559 + Charlie8 DNA MER1_type 16 182 -2235 361 246 53 9 chr21 19601441 19601555 -15306015 - MIR3 SINE MIR -4 204 86 1322 156 50 100 chr21 19602826 19602916 -15304654 + AluJb SINE Alu 1 94 -218 2396 92 3 0 chr21 19602916 19603221 -15304349 + AluSp SINE Alu 6 311 -2 1322 156 50 100 chr21 19603221 19603431 -15304139 + AluJb SINE Alu 94 286 -26 1670 97 0 0 chr21 19603447 19603664 -15303906 - THE1A LTR MaLR 0 355 139 250 269 15 0 chr21 19605468 19605535 -15302035 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 2327 105 0 10 chr21 19605883 19606196 -15301374 + AluSg SINE Alu 1 310 0 1893 125 0 66 chr21 19606987 19607315 -15300255 - AluSx SINE Alu 0 308 1 21 0 0 0 chr21 19607320 19607341 -15300229 + AT_rich Low_complexity Low_complexity 1 21 0 191 339 18 9 chr21 19607370 19607479 -15300091 - L3 LINE CR1 -257 1320 1211 2398 102 3 0 chr21 19607991 19608294 -15299276 + AluSp SINE Alu 1 304 -9 1927 148 0 66 chr21 19608831 19609096 -15298474 - MER2 DNA MER2_type -1 343 107 2190 119 3 13 chr21 19609096 19609408 -15298162 - AluSx SINE Alu -3 309 1 1927 148 0 66 chr21 19609408 19609508 -15298062 - MER2 DNA MER2_type -237 107 2 1923 178 62 30 chr21 19609668 19610107 -15297463 + L1MB8 LINE L1 5652 6104 -74 1792 139 31 14 chr21 19610117 19610404 -15297166 + AluSx SINE Alu 1 292 -20 2192 96 7 0 chr21 19610410 19610691 -15296879 + AluSq SINE Alu 12 294 -19 21 57 0 0 chr21 19610692 19610727 -15296843 + AT_rich Low_complexity Low_complexity 1 35 0 285 195 0 49 chr21 19610727 19610809 -15296761 + L1MB8 LINE L1 6101 6178 0 204 337 109 0 chr21 19611006 19611098 -15296472 + MIR SINE MIR 45 146 -62 947 113 20 13 chr21 19611307 19611458 -15296112 + MLT1A1 LTR MaLR 1 152 -213 1382 143 0 48 chr21 19611461 19611522 -15296048 + AluJb SINE Alu 84 146 -166 2238 117 0 0 chr21 19611522 19611820 -15295750 + AluSx SINE Alu 1 298 -14 1382 143 0 48 chr21 19611820 19611989 -15295581 + AluJb SINE Alu 146 303 -9 727 207 2 6 chr21 19612036 19612185 -15295385 + MLT1A2 LTR MaLR 244 374 0 2233 106 0 0 chr21 19613093 19613385 -15294185 + AluSx SINE Alu 1 292 -20 1519 165 4 40 chr21 19614457 19614730 -15292840 + AluJo SINE Alu 40 302 -10 612 158 47 3 chr21 19615078 19615198 -15292372 + MSTA LTR MaLR 1 144 -313 1488 118 5 5 chr21 19615199 19615410 -15292160 - AluSq SINE Alu -15 298 88 43 0 0 0 chr21 19615916 19615959 -15291611 + AT_rich Low_complexity Low_complexity 1 43 0 309 161 40 47 chr21 19615962 19616111 -15291459 + (TTATA)n Simple_repeat Simple_repeat 5 152 0 2054 110 31 54 chr21 19617331 19617648 -15289922 - AluSq SINE Alu -3 310 1 1486 166 24 0 chr21 19618088 19618341 -15289229 + MSTA LTR MaLR 158 416 -12 423 0 0 0 chr21 19618348 19618395 -15289175 + (CA)n Simple_repeat Simple_repeat 2 48 0 1759 166 47 7 chr21 19618494 19618615 -15288955 + AluJo SINE Alu 1 116 -196 227 31 31 0 chr21 19618615 19618647 -15288923 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 1759 166 47 7 chr21 19618647 19618821 -15288749 + AluJo SINE Alu 116 308 -4 435 227 16 39 chr21 19618865 19618993 -15288577 + MIR SINE MIR 110 234 -28 1251 224 26 45 chr21 19619085 19619329 -15288241 - MER58B DNA MER1_type -2079 341 102 2015 103 26 0 chr21 19619329 19619642 -15287928 - AluSx SINE Alu 0 322 3 1251 224 26 45 chr21 19619642 19619709 -15287861 - MER58B DNA MER1_type -2318 102 35 1398 240 93 43 chr21 19621165 19621478 -15286092 + MER115 DNA AcHobo 206 549 -144 2383 93 0 0 chr21 19621478 19621778 -15285792 + AluSx SINE Alu 1 300 -12 1398 240 93 43 chr21 19621778 19621906 -15285664 + MER115 DNA AcHobo 549 669 -24 2469 132 3 0 chr21 19621977 19622341 -15285229 + MER47A DNA MER2_type 2 366 0 2521 75 3 0 chr21 19622424 19622729 -15284841 + AluSq SINE Alu 1 306 -7 2051 166 69 15 chr21 19622751 19623091 -15284479 + MSTB LTR MaLR 1 368 -58 2147 133 0 0 chr21 19623091 19623391 -15284179 - AluSx SINE Alu -12 300 1 2051 166 69 15 chr21 19623391 19623454 -15284116 + MSTB LTR MaLR 368 426 0 3394 197 8 5 chr21 19624161 19624822 -15282748 + L1MC1 LINE L1 5667 6329 -4 345 24 0 0 chr21 19624823 19624865 -15282705 + (TC)n Simple_repeat Simple_repeat 1 42 0 423 0 0 0 chr21 19624864 19624911 -15282659 + (CA)n Simple_repeat Simple_repeat 1 47 0 2190 126 0 0 chr21 19625091 19625385 -15282185 + AluSx SINE Alu 1 294 -18 478 250 70 40 chr21 19626429 19626629 -15280941 + L2 LINE L2 2911 3116 -197 269 227 31 16 chr21 19626672 19626800 -15280770 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 2169 105 7 3 chr21 19626803 19627098 -15280472 + AluSx SINE Alu 1 296 -16 198 0 0 0 chr21 19628294 19628316 -15279254 + (A)n Simple_repeat Simple_repeat 1 22 0 955 109 0 0 chr21 19629033 19629161 -15278409 + AluSq/x SINE Alu 5 132 -181 23 0 0 0 chr21 19629168 19629191 -15278379 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 19629382 19629403 -15278167 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 19629499 19629527 -15278043 + AT_rich Low_complexity Low_complexity 1 28 0 2322 104 3 10 chr21 19630256 19630565 -15277005 - AluSx SINE Alu -5 307 1 452 225 58 22 chr21 19630683 19630821 -15276749 - MIR SINE MIR -50 212 70 1543 69 5 0 chr21 19630944 19631132 -15276438 + AluSp SINE Alu 1 189 -124 268 56 28 0 chr21 19631161 19631232 -15276338 + AluSp/q SINE Alu 248 319 0 1732 142 51 15 chr21 19631789 19632063 -15275507 + AluJo SINE Alu 14 297 -15 2303 90 3 3 chr21 19632070 19632371 -15275199 + AluSc SINE Alu 3 303 -6 2322 74 0 23 chr21 19632799 19633098 -15274472 + AluY SINE Alu 1 292 -19 2383 75 0 7 chr21 19633287 19633582 -15273988 - AluSc SINE Alu -16 293 1 222 322 44 11 chr21 19633956 19634046 -15273524 - L2 LINE L2 -90 3182 3090 688 184 16 0 chr21 19634670 19634795 -15272775 - FLAM_A SINE Alu -8 134 8 706 185 52 25 chr21 19634810 19634990 -15272580 + L1MD2 LINE L1 6191 6357 -2 1720 163 3 20 chr21 19635096 19635396 -15272174 + AluJo SINE Alu 1 295 -17 2250 117 25 33 chr21 19635605 19635972 -15271598 - THE1B LTR MaLR 0 364 1 395 238 143 119 chr21 19636426 19636678 -15270892 + MIR SINE MIR 5 262 0 2131 101 3 7 chr21 19637765 19638073 -15269497 - AluSx SINE Alu -5 307 1 783 193 80 6 chr21 19638912 19639088 -15268482 + MER5A DNA MER1_type 1 189 0 2257 90 3 0 chr21 19639243 19639543 -15268027 - AluSg SINE Alu -9 301 1 180 97 0 0 chr21 19640222 19640253 -15267317 + (TG)n Simple_repeat Simple_repeat 1 31 0 454 302 6 3 chr21 19640290 19640651 -15266919 + (TG)n Simple_repeat Simple_repeat 1 362 0 380 326 6 0 chr21 19640665 19640843 -15266727 + (TG)n Simple_repeat Simple_repeat 2 180 0 249 189 33 0 chr21 19640843 19640933 -15266637 + GA-rich Low_complexity Low_complexity 1 93 0 521 281 72 59 chr21 19641463 19641607 -15265963 - MER58A DNA MER1_type -2196 224 74 2128 128 0 0 chr21 19641607 19641911 -15265659 - AluSx SINE Alu -8 304 1 521 281 72 59 chr21 19641911 19641987 -15265583 - MER58A DNA MER1_type -2346 74 1 2403 193 22 26 chr21 19642073 19642494 -15265076 + L1PB4 LINE L1 5646 6066 -90 2224 116 17 46 chr21 19642494 19642635 -15264935 - MER1B DNA MER1_type -2373 337 193 2168 97 7 13 chr21 19642635 19642944 -15264626 + AluSx SINE Alu 1 307 -5 2224 116 17 46 chr21 19642944 19643148 -15264422 - MER1B DNA MER1_type -2517 193 2 2403 193 22 26 chr21 19643148 19643224 -15264346 + L1PB4 LINE L1 6066 6141 -15 2421 68 0 3 chr21 19643395 19643705 -15263865 - AluY SINE Alu -2 309 1 196 213 21 0 chr21 19644040 19644087 -15263483 - MIR SINE MIR -151 111 64 281 347 62 36 chr21 19646006 19646280 -15261290 + L2 LINE L2 2571 2851 -463 2828 93 23 2 chr21 19646461 19646860 -15260710 - L1PB2 LINE L1 0 6151 5745 2084 107 45 72 chr21 19647083 19647135 -15260435 - THE1B LTR MaLR 0 364 312 2033 109 7 3 chr21 19647135 19647457 -15260113 - AluSq SINE Alu 0 323 1 2084 107 45 72 chr21 19647457 19647777 -15259793 - THE1B LTR MaLR -52 312 1 314 282 85 88 chr21 19647973 19648209 -15259361 - L2 LINE L2 -381 2933 2697 2227 75 48 0 chr21 19648209 19648504 -15259066 + AluSx SINE Alu 1 309 -3 314 282 85 88 chr21 19648504 19648561 -15259009 - L2 LINE L2 -617 2697 2641 479 320 78 33 chr21 19649658 19649902 -15257668 + L1ME LINE L1 5534 5788 -333 2220 107 7 0 chr21 19649904 19650212 -15257358 + AluSq SINE Alu 1 310 -3 1016 183 129 57 chr21 19650872 19650975 -15256595 + MLT1C LTR MaLR 6 100 -367 2278 93 0 28 chr21 19650975 19651296 -15256274 + AluSx SINE Alu 1 312 0 1016 183 129 57 chr21 19651296 19651486 -15256084 + MLT1C LTR MaLR 100 326 -141 2214 112 33 15 chr21 19651486 19651817 -15255753 + MER1B DNA MER1_type 1 337 0 1016 183 129 57 chr21 19651817 19651839 -15255731 + MLT1C LTR MaLR 326 345 -122 1397 188 4 0 chr21 19651844 19652099 -15255471 + AluJo SINE Alu 1 256 -56 647 193 0 30 chr21 19652187 19652322 -15255248 + MLT1C LTR MaLR 337 467 0 252 320 41 21 chr21 19652516 19652613 -15254957 - MER5A DNA MER1_type 0 189 91 2535 52 0 0 chr21 19653226 19653533 -15254037 - AluY SINE Alu -4 307 1 326 286 24 0 chr21 19653683 19653767 -15253803 + L2 LINE L2 3134 3219 -53 243 0 0 0 chr21 19653836 19653863 -15253707 + (A)n Simple_repeat Simple_repeat 1 27 0 1620 138 44 35 chr21 19653863 19654182 -15253388 + L1MB8 LINE L1 5854 6175 -3 2183 144 41 47 chr21 19654512 19654909 -15252661 + L1MB2 LINE L1 5730 6126 -45 1925 122 0 7 chr21 19654909 19655220 -15252350 + AluSx SINE Alu 6 314 0 2183 144 41 47 chr21 19655220 19655264 -15252306 + L1MB2 LINE L1 6126 6169 -2 238 286 107 24 chr21 19655641 19655725 -15251845 - MER5A DNA MER1_type -87 102 12 396 167 0 0 chr21 19655751 19655823 -15251747 + CT-rich Low_complexity Low_complexity 1 72 0 1467 152 20 108 chr21 19655823 19656166 -15251404 - AluYb8 SINE Alu -3 315 3 1570 66 5 0 chr21 19656169 19656366 -15251204 - L1PB2 LINE L1 -7 6144 5947 1295 185 27 0 chr21 19657049 19657308 -15250262 - AluJo SINE Alu -1 311 46 2261 91 0 3 chr21 19657340 19657649 -15249921 + AluY SINE Alu 1 308 -3 1471 161 62 41 chr21 19657693 19657985 -15249585 + AluJo SINE Alu 1 298 -14 2076 114 23 0 chr21 19658115 19658414 -15249156 + AluSq SINE Alu 1 306 -7 1931 149 0 0 chr21 19658736 19659038 -15248532 + AluJb SINE Alu 1 302 -10 1545 146 0 8 chr21 19659130 19659414 -15248156 - AluJb SINE Alu 0 305 24 590 246 22 38 chr21 19659451 19659634 -15247936 + L1ME LINE L1 5559 5738 -383 248 321 28 0 chr21 19659670 19659779 -15247791 + MLT2E LTR ERVL 27 138 -490 2248 70 13 3 chr21 19660062 19660362 -15247208 + AluSq SINE Alu 1 303 -10 340 193 0 0 chr21 19660367 19660424 -15247146 - L1MC4 LINE L1 -1339 6703 6647 194 128 26 0 chr21 19661136 19661175 -15246395 + (TAA)n Simple_repeat Simple_repeat 1 40 0 846 172 0 43 chr21 19661438 19661601 -15245969 - MER5A DNA MER1_type -33 156 1 265 291 101 0 chr21 19661603 19661682 -15245888 + L2 LINE L2 3191 3277 -36 1242 176 128 43 chr21 19661741 19662063 -15245507 - MER7A DNA MER2_type -1 345 1 2374 85 0 0 chr21 19662227 19662534 -15245036 - AluSc SINE Alu -2 307 1 1840 136 24 0 chr21 19663939 19664226 -15243344 - AluJb SINE Alu -18 294 1 1184 264 41 10 chr21 19664278 19664573 -15242997 + L1MEc LINE L1 9 312 -6084 189 292 0 0 chr21 19665015 19665063 -15242507 + L2 LINE L2 3266 3313 0 2028 154 96 6 chr21 19665811 19666174 -15241396 + MSTD LTR MaLR 1 396 0 227 362 39 24 chr21 19666310 19666437 -15241133 + L2 LINE L2 3123 3251 -21 1811 133 31 20 chr21 19666491 19666785 -15240785 + AluSg SINE Alu 1 297 -13 26 0 0 0 chr21 19666785 19666811 -15240759 + AT_rich Low_complexity Low_complexity 1 26 0 2040 141 0 0 chr21 19666811 19667117 -15240453 + AluSx SINE Alu 1 306 -6 321 224 93 28 chr21 19667273 19667380 -15240190 - L1ME4a LINE L1 -174 5947 5834 1440 143 17 4 chr21 19667415 19667652 -15239918 + AluJb SINE Alu 57 296 -16 2182 133 138 5 chr21 19667669 19668046 -15239524 + MSTA LTR MaLR 1 427 -1 2257 116 0 0 chr21 19668315 19668626 -15238944 - AluSx SINE Alu 0 312 2 946 210 0 59 chr21 19668853 19669072 -15238498 - MER20 DNA MER1_type -7 212 7 2010 141 0 0 chr21 19669415 19669721 -15237849 - AluSx SINE Alu -2 310 5 520 205 134 29 chr21 19670117 19670288 -15237282 + MIR SINE MIR 74 262 0 2181 90 10 3 chr21 19670736 19671036 -15236534 + AluSc SINE Alu 1 302 -7 236 250 0 26 chr21 19671399 19671475 -15236095 + MER5A DNA MER1_type 1 74 -115 404 235 200 12 chr21 19671634 19671804 -15235766 + MLT1J LTR MaLR 310 511 0 1632 190 26 82 chr21 19671846 19671903 -15235667 - MER31B LTR ERV1 -3 463 404 1700 178 0 23 chr21 19671903 19672207 -15235363 + AluJb SINE Alu 2 298 -14 1632 190 26 82 chr21 19672207 19672368 -15235202 - MER31B LTR ERV1 -62 404 236 1959 147 0 0 chr21 19672368 19672668 -15234902 - AluSx SINE Alu -12 300 1 1632 190 26 82 chr21 19672668 19672938 -15234632 - MER31B LTR ERV1 -230 236 1 2042 122 3 0 chr21 19674852 19675156 -15232414 + AluSp SINE Alu 1 305 -8 194 339 16 57 chr21 19675333 19675457 -15232113 + MIR3 SINE MIR 87 205 -3 2209 109 0 0 chr21 19676063 19676376 -15231194 - AluSq SINE Alu 0 313 1 773 148 0 0 chr21 19677243 19677365 -15230205 + AluJb SINE Alu 2 123 -189 964 171 6 17 chr21 19677421 19677596 -15229974 + AluJb SINE Alu 132 304 -8 1033 217 155 60 chr21 19677873 19678343 -15229227 - MLT2B2 LTR ERVL 0 515 1 1977 139 3 7 chr21 19678458 19678768 -15228802 + AluSx SINE Alu 1 309 -3 390 261 18 67 chr21 19679018 19679101 -15228469 + MIR SINE MIR 92 165 -97 1907 144 10 0 chr21 19679101 19679400 -15228170 - AluJb SINE Alu -10 302 1 390 261 18 67 chr21 19679400 19679481 -15228089 + MIR SINE MIR 165 248 -14 2102 122 3 0 chr21 19679502 19679813 -15227757 - AluSx SINE Alu 0 312 1 2268 105 41 36 chr21 19680736 19681098 -15226472 - THE1B LTR MaLR 0 364 1 447 19 0 0 chr21 19681845 19681897 -15225673 + (TG)n Simple_repeat Simple_repeat 1 52 0 282 73 0 0 chr21 19681903 19681944 -15225626 + (GA)n Simple_repeat Simple_repeat 2 42 0 442 182 17 10 chr21 19682225 19682325 -15225245 + MLT1E1 LTR MaLR 53 183 -410 1341 151 35 4 chr21 19682356 19682588 -15224982 + AluSg SINE Alu 64 302 -8 273 234 78 0 chr21 19683491 19683555 -15224015 + MLT1E1 LTR MaLR 303 371 -253 1914 102 48 17 chr21 19683555 19683894 -15223676 + AluSx SINE Alu 1 312 0 641 266 114 23 chr21 19683963 19684418 -15223152 + L2 LINE L2 2795 3306 -7 1263 253 75 21 chr21 19684810 19685136 -15222434 + L1MC4a LINE L1 6445 6795 -1013 2243 117 7 0 chr21 19685136 19685436 -15222134 + AluSp SINE Alu 3 304 -9 1263 253 75 21 chr21 19685436 19685485 -15222085 + L1MC4a LINE L1 6795 6840 -968 1367 128 0 0 chr21 19685546 19685734 -15221836 - AluSq SINE Alu -11 302 115 1227 280 86 15 chr21 19685786 19686261 -15221309 + L1MC4 LINE L1 7387 7895 -147 299 238 111 60 chr21 19686860 19687158 -15220412 - L1MC5 LINE L1 -183 7778 7466 736 197 58 76 chr21 19687895 19688118 -15219452 + MER20 DNA MER1_type 1 219 0 2461 87 3 3 chr21 19688273 19688585 -15218985 + AluSq SINE Alu 1 312 -1 590 300 107 25 chr21 19688760 19689247 -15218323 - L2 LINE L2 -86 3227 2710 204 40 0 0 chr21 19689250 19689275 -15218295 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1203 167 47 9 chr21 19689275 19689490 -15218080 - AluJo SINE Alu -32 280 58 2237 120 3 0 chr21 19690480 19690779 -15216791 + AluSx SINE Alu 1 300 -12 2108 128 3 13 chr21 19691337 19691641 -15215929 + AluSx SINE Alu 1 301 -11 1885 159 0 3 chr21 19691819 19692102 -15215468 - AluJb SINE Alu -30 282 1 975 179 116 34 chr21 19692247 19692454 -15215116 - MER58A DNA MER1_type 0 224 1 572 101 13 0 chr21 19692628 19692707 -15214863 - MADE1 DNA Mariner 0 80 1 2359 105 0 6 chr21 19692866 19693180 -15214390 - AluSx SINE Alu 0 312 1 363 293 83 28 chr21 19693455 19693636 -15213934 + L2 LINE L2 2474 2664 -650 2159 112 20 0 chr21 19693671 19693965 -15213605 + AluSx SINE Alu 1 300 -12 182 37 37 0 chr21 19694516 19694543 -15213027 + (TTTTTA)n Simple_repeat Simple_repeat 3 30 0 1576 204 3 10 chr21 19694564 19694696 -15212874 + AluSx SINE Alu 3 134 -178 2343 112 0 0 chr21 19694696 19694999 -15212571 + AluSx SINE Alu 1 303 -9 1576 204 3 10 chr21 19694999 19695175 -15212395 + AluSx SINE Alu 134 309 -3 888 181 0 47 chr21 19695179 19695350 -15212220 + AluJb SINE Alu 129 291 -21 220 133 0 22 chr21 19695371 19695416 -15212154 + (TTTTTA)n Simple_repeat Simple_repeat 1 44 0 646 193 83 0 chr21 19695421 19695530 -15212040 - FRAM SINE Alu -61 115 1 268 259 38 99 chr21 19695575 19695706 -15211864 + L3 LINE CR1 1312 1434 -143 2415 67 0 3 chr21 19695708 19696006 -15211564 - AluY SINE Alu -14 297 1 1115 45 0 0 chr21 19696009 19696141 -15211429 - AluY SINE Alu -179 132 1 1967 171 42 73 chr21 19696225 19696706 -15210864 - MER31B LTR ERV1 0 466 1 184 283 43 22 chr21 19696720 19696812 -15210758 - MIR SINE MIR -78 130 37 1167 195 0 27 chr21 19697265 19697486 -15210084 + AluJo SINE Alu 85 299 -13 2136 119 18 0 chr21 19697486 19697810 -15209760 + AluSg SINE Alu 1 329 0 523 189 33 0 chr21 19697810 19697900 -15209670 + AluJo/F(R)AM SINE Alu 133 225 -87 2124 118 19 22 chr21 19697937 19698251 -15209319 + AluSq SINE Alu 1 313 0 2039 119 0 24 chr21 19698336 19698630 -15208940 + AluSx SINE Alu 8 294 -18 2270 80 3 3 chr21 19698630 19698919 -15208651 + AluY SINE Alu 1 289 -22 1932 134 3 59 chr21 19699215 19699536 -15208034 - AluJo SINE Alu -9 303 1 2489 68 0 13 chr21 19699682 19699992 -15207578 + AluY SINE Alu 1 306 -5 2217 125 0 3 chr21 19700137 19700440 -15207130 - AluSx SINE Alu -10 302 1 2297 97 3 0 chr21 19700454 19700768 -15206802 - AluSq SINE Alu 0 315 1 190 327 89 55 chr21 19701394 19701596 -15205974 + MIR SINE MIR 53 261 -1 2254 106 3 0 chr21 19701723 19702038 -15205532 + AluSp SINE Alu 1 316 0 603 262 92 62 chr21 19702185 19702380 -15205190 + MIR SINE MIR 14 219 -43 2106 139 7 0 chr21 19702380 19702682 -15204888 + AluSx SINE Alu 1 304 -8 603 262 92 62 chr21 19702682 19702726 -15204844 + MIR SINE MIR 219 260 -2 477 258 32 0 chr21 19702898 19703022 -15204548 + MIR SINE MIR 124 251 -11 2551 64 3 3 chr21 19703284 19703595 -15203975 + AluY SINE Alu 1 311 0 2776 136 24 0 chr21 19703999 19704411 -15203159 - MSTB LTR MaLR -4 422 1 805 269 61 0 chr21 19704457 19704669 -15202901 + MIR SINE MIR 19 243 -19 2434 55 24 3 chr21 19704682 19704975 -15202595 - AluSp SINE Alu -14 299 1 342 0 0 0 chr21 19705161 19705199 -15202371 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1754 153 0 53 chr21 19705202 19705502 -15202068 - AluJb SINE Alu -27 285 2 253 164 194 0 chr21 19707248 19707315 -15200255 - MER116 DNA Mariner 0 80 1 1793 97 0 4 chr21 19707610 19707837 -15199733 - AluSg/x SINE Alu -12 298 73 807 115 0 0 chr21 19709493 19709623 -15197947 + (TGGA)n Simple_repeat Simple_repeat 1 130 0 580 260 87 15 chr21 19709628 19709824 -15197746 - MER63A DNA MER1_type 0 210 1 981 189 5 20 chr21 19710804 19710861 -15196709 - MLT1B LTR MaLR 0 390 334 276 100 0 0 chr21 19710861 19710901 -15196669 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 1988 132 3 17 chr21 19710901 19711190 -15196380 - AluSx SINE Alu -27 285 1 981 189 5 20 chr21 19711190 19711332 -15196238 - MLT1B LTR MaLR -54 336 193 2484 243 90 16 chr21 19711474 19712196 -15195374 - MER21B LTR ERV1 -58 805 27 324 0 0 0 chr21 19712196 19712232 -15195338 + (TG)n Simple_repeat Simple_repeat 2 37 0 2484 243 90 16 chr21 19712232 19712246 -15195324 - MER21B LTR ERV1 -836 27 15 2186 92 28 0 chr21 19712296 19712579 -15194991 - AluSx SINE Alu -21 291 1 544 257 162 5 chr21 19713004 19713214 -15194356 - MIR SINE MIR 0 262 20 1462 207 102 6 chr21 19714049 19714382 -15193188 + MLT1A1 LTR MaLR 1 365 0 1860 178 3 50 chr21 19714898 19715281 -15192289 + MLT1A1 LTR MaLR 1 365 0 577 298 18 0 chr21 19715875 19716043 -15191527 - MIR SINE MIR -7 255 85 337 145 14 0 chr21 19717372 19717441 -15190129 + MER20 DNA MER1_type 139 208 -11 2307 109 0 13 chr21 19717499 19717674 -15189896 - AluSx SINE Alu -5 307 136 2970 13 0 0 chr21 19717674 19717992 -15189578 - AluYb8 SINE Alu 0 318 1 2307 109 0 13 chr21 19717992 19718127 -15189443 - AluSx SINE Alu -176 136 1 483 69 0 0 chr21 19718180 19718238 -15189332 - AluS SINE Alu -234 79 22 334 226 236 0 chr21 19718390 19718496 -15189074 - MIR SINE MIR -107 155 25 2078 134 42 0 chr21 19718605 19718941 -15188629 - THE1B LTR MaLR 0 364 15 355 258 74 31 chr21 19718987 19719150 -15188420 + L1ME4a LINE L1 5952 6121 0 1548 187 8 8 chr21 19719223 19719490 -15188080 + AluJo SINE Alu 1 267 -45 293 191 36 18 chr21 19719505 19719615 -15187955 + GA-rich Low_complexity Low_complexity 2 113 0 356 86 0 17 chr21 19719623 19719681 -15187889 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 484 302 60 66 chr21 19720597 19720980 -15186590 + MLT1L LTR MaLR 16 395 -220 2105 117 0 19 chr21 19720980 19721287 -15186283 + AluSc SINE Alu 1 301 -8 484 302 60 66 chr21 19721287 19721505 -15186065 + MLT1L LTR MaLR 395 613 -2 309 239 60 0 chr21 19722161 19722228 -15185342 + L1MCa LINE L1 1994 2064 -4362 4278 85 54 34 chr21 19722268 19722912 -15184658 + MER4A LTR ERV1 4 660 -4 432 0 0 0 chr21 19722912 19722960 -15184610 + (CA)n Simple_repeat Simple_repeat 2 49 0 2132 121 3 24 chr21 19724051 19724349 -15183221 - AluSx SINE Alu -20 292 1 2256 104 0 0 chr21 19724698 19724985 -15182585 + AluSc SINE Alu 1 287 -22 348 231 9 37 chr21 19725085 19725193 -15182377 + L1MC4 LINE L1 7807 7911 -131 1362 169 37 144 chr21 19725332 19725741 -15181829 - MLT1A1 LTR MaLR 0 365 1 281 179 0 147 chr21 19725744 19725823 -15181747 + Tigger3(Golem) DNA MER2_type 1 65 -2964 2088 103 24 17 chr21 19725823 19726115 -15181455 + AluSx SINE Alu 1 294 -18 281 179 0 147 chr21 19726115 19726130 -15181440 + Tigger3(Golem) DNA MER2_type 65 81 -2948 1670 141 56 63 chr21 19726131 19726343 -15181227 + Tigger3(Golem) DNA MER2_type 2227 2436 -592 1786 145 109 0 chr21 19726343 19726619 -15180951 + AluSx SINE Alu 1 306 -6 1670 141 56 63 chr21 19726619 19726832 -15180738 + Tigger3(Golem) DNA MER2_type 2436 2649 -379 191 88 29 0 chr21 19726832 19726866 -15180704 + (CTCA)n Simple_repeat Simple_repeat 4 38 0 642 142 0 0 chr21 19726867 19726973 -15180597 + Tigger3(Golem) DNA MER2_type 2685 2790 -239 1782 115 27 41 chr21 19726975 19727270 -15180300 - MER1B DNA MER1_type -46 293 3 766 189 14 0 chr21 19727271 19727414 -15180156 + Tigger3(Golem) DNA MER2_type 2884 3028 -1 269 169 0 84 chr21 19727414 19727485 -15180085 + L1MC4 LINE L1 7976 8040 -2 2270 91 7 0 chr21 19728799 19729107 -15178463 + AluSx SINE Alu 1 310 0 264 122 0 0 chr21 19729109 19729150 -15178420 + (GGGGA)n Simple_repeat Simple_repeat 4 44 0 183 97 0 32 chr21 19729284 19729315 -15178255 - L2 LINE L2 -107 3165 3136 1538 192 68 3 chr21 19729413 19729705 -15177865 + AluJb SINE Alu 1 311 -1 2293 123 0 0 chr21 19729706 19730015 -15177555 + AluSg SINE Alu 2 310 0 2313 104 10 0 chr21 19730021 19730330 -15177240 + AluSx SINE Alu 1 312 0 275 216 80 23 chr21 19730382 19730470 -15177100 + MIR SINE MIR 39 131 -77 1657 232 47 20 chr21 19730603 19731051 -15176519 + MLT1C LTR MaLR 1 460 -7 2347 74 3 0 chr21 19731722 19732037 -15175533 - AluSx SINE Alu 0 316 1 1026 162 0 6 chr21 19732405 19732572 -15174998 - FRAM SINE Alu 0 166 1 206 152 0 43 chr21 19732608 19732654 -15174916 + (CCA)n Simple_repeat Simple_repeat 2 45 0 2046 151 23 0 chr21 19733248 19733553 -15174017 + AluSx SINE Alu 1 312 0 579 214 12 18 chr21 19733567 19733735 -15173835 + GA-rich Low_complexity Low_complexity 4 170 0 426 264 94 44 chr21 19735264 19735423 -15172147 + MIR SINE MIR 48 214 -48 1936 94 0 21 chr21 19735881 19736167 -15171403 + AluSx SINE Alu 24 303 -9 251 242 0 15 chr21 19736194 19736260 -15171310 - MIR SINE MIR -161 101 37 231 125 0 0 chr21 19736378 19736418 -15171152 + (CA)n Simple_repeat Simple_repeat 1 40 0 928 144 22 28 chr21 19736452 19736632 -15170938 - L1MB3 LINE L1 0 6183 6005 2262 120 19 30 chr21 19736633 19736771 -15170799 - L1MB3 LINE L1 -232 5951 5813 2004 130 3 0 chr21 19736771 19737070 -15170500 + AluSx SINE Alu 1 300 -12 2262 120 19 30 chr21 19737070 19737298 -15170272 - L1MB3 LINE L1 -370 5813 5589 21 0 0 0 chr21 19737308 19737329 -15170241 + AT_rich Low_complexity Low_complexity 1 21 0 2127 97 3 7 chr21 19737329 19737629 -15169941 - AluSx SINE Alu 0 312 14 467 284 22 37 chr21 19737713 19737847 -15169723 - L2 LINE L2 -5 3267 3136 1432 229 75 32 chr21 19737975 19738416 -15169154 + MLT1C LTR MaLR 1 460 -7 2208 89 7 10 chr21 19738519 19738823 -15168747 - AluSq SINE Alu -8 305 3 1356 213 39 102 chr21 19740166 19740238 -15167332 + MLT1C LTR MaLR 1 76 -391 1945 157 12 83 chr21 19740238 19740658 -15166912 - MLT1B LTR MaLR 0 390 1 1356 213 39 102 chr21 19740658 19740679 -15166891 + MLT1C LTR MaLR 76 97 -370 2171 99 0 3 chr21 19740679 19740972 -15166598 + AluSq SINE Alu 14 305 -8 1356 213 39 102 chr21 19740972 19741369 -15166201 + MLT1C LTR MaLR 97 461 -6 795 228 56 30 chr21 19741502 19741734 -15165836 + MIR SINE MIR 1 238 -24 1881 153 0 10 chr21 19742222 19742535 -15165035 - AluJb SINE Alu -2 310 1 1884 155 7 0 chr21 19742741 19742921 -15164649 - AluJb SINE Alu 0 312 128 228 35 0 0 chr21 19742921 19742950 -15164620 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 1884 155 7 0 chr21 19742950 19743079 -15164491 - AluJb SINE Alu -184 128 1 787 131 215 12 chr21 19743319 19743505 -15164065 - MIR SINE MIR -23 239 21 2089 107 3 0 chr21 19743861 19744150 -15163420 + AluSq SINE Alu 1 290 -23 1524 136 0 59 chr21 19744566 19744839 -15162731 + AluSx SINE Alu 36 292 -20 609 219 179 0 chr21 19745440 19745591 -15161979 + MER5A DNA MER1_type 1 178 -11 2033 111 0 0 chr21 19745973 19746261 -15161309 + AluSx SINE Alu 13 300 -12 2149 119 0 0 chr21 19746265 19746576 -15160994 + AluSx SINE Alu 1 311 -1 206 255 0 0 chr21 19746807 19746858 -15160712 + A-rich Low_complexity Low_complexity 1 51 0 2158 96 16 0 chr21 19746909 19747212 -15160358 + AluSg SINE Alu 1 308 -2 751 139 9 9 chr21 19747399 19747514 -15160056 + AluJb SINE Alu 13 127 -185 2219 200 48 10 chr21 19747763 19748259 -15159311 + MER34 LTR ERV1 12 526 -16 2201 89 3 22 chr21 19748409 19748722 -15158848 - AluSp SINE Alu -6 307 1 2019 102 0 36 chr21 19749060 19749164 -15158406 + AluSx SINE Alu 13 119 -193 2400 59 20 0 chr21 19749164 19749468 -15158102 + AluSp SINE Alu 1 310 -3 2019 102 0 36 chr21 19749468 19749667 -15157903 + AluSx SINE Alu 119 305 -7 2728 146 62 37 chr21 19749669 19750185 -15157385 + L1MB3 LINE L1 5603 6136 -47 2243 86 3 0 chr21 19750185 19750486 -15157084 + AluSp SINE Alu 1 302 -11 2728 146 62 37 chr21 19750486 19750536 -15157034 + L1MB3 LINE L1 6136 6183 0 1513 173 0 8 chr21 19751606 19751872 -15155698 + AluJo SINE Alu 18 281 -31 345 24 0 0 chr21 19751872 19751914 -15155656 + (CA)n Simple_repeat Simple_repeat 1 42 0 2263 72 0 0 chr21 19752013 19752306 -15155264 - AluY SINE Alu -18 293 1 33 46 0 15 chr21 19752311 19752361 -15155209 + AT_rich Low_complexity Low_complexity 1 51 -13 2274 92 0 9 chr21 19752361 19752676 -15154894 + AluSp SINE Alu 2 313 0 33 46 0 15 chr21 19752676 19752690 -15154880 + AT_rich Low_complexity Low_complexity 51 64 0 430 237 22 9 chr21 19753671 19753778 -15153792 + MIR SINE MIR 55 161 -62 2128 87 21 0 chr21 19753781 19754070 -15153500 + AluSx SINE Alu 5 299 -13 286 125 0 0 chr21 19754116 19754164 -15153406 + Alu SINE Alu 247 294 -8 1862 168 126 8 chr21 19754253 19754634 -15152936 - MSTB LTR MaLR 0 426 1 813 259 61 24 chr21 19754884 19754994 -15152576 - MIR SINE MIR 0 262 157 2123 173 49 22 chr21 19754994 19755233 -15152337 - MSTB LTR MaLR 0 426 170 2075 87 42 0 chr21 19755233 19755520 -15152050 + AluSx SINE Alu 1 299 -13 2123 173 49 22 chr21 19755520 19755691 -15151879 - MSTB LTR MaLR -256 170 5 813 259 61 24 chr21 19755691 19755827 -15151743 - MIR SINE MIR -105 157 7 2261 99 0 0 chr21 19755888 19756190 -15151380 + AluSx SINE Alu 2 303 -9 2008 126 0 0 chr21 19756824 19757137 -15150433 - AluSx SINE Alu 0 312 1 1444 163 7 19 chr21 19758368 19758638 -15148932 + AluJo SINE Alu 1 267 -45 2029 93 14 7 chr21 19758658 19758976 -15148594 + AluSg SINE Alu 1 310 0 2325 54 24 3 chr21 19759056 19759354 -15148216 - AluY SINE Alu -7 304 1 254 315 0 39 chr21 19761681 19761808 -15145762 + GA-rich Low_complexity Low_complexity 4 125 0 1943 154 0 0 chr21 19761970 19762269 -15145301 + AluJo SINE Alu 1 299 -13 819 201 56 0 chr21 19762893 19763072 -15144498 + AluJb SINE Alu 85 273 -39 1947 135 0 0 chr21 19763190 19763479 -15144091 + AluSx SINE Alu 17 305 -7 770 179 38 77 chr21 19763479 19763607 -15143963 - MER33 DNA MER1_type -2310 275 159 1267 186 82 4 chr21 19763607 19763887 -15143683 + AluJo SINE Alu 1 302 -10 770 179 38 77 chr21 19763887 19763993 -15143577 - MER33 DNA MER1_type -2426 159 50 1950 118 7 0 chr21 19764542 19764814 -15142756 + AluSx SINE Alu 14 287 -25 1434 151 65 0 chr21 19764991 19765236 -15142334 + AluJb SINE Alu 33 293 -19 2320 97 0 0 chr21 19765236 19765546 -15142024 + AluSg SINE Alu 1 310 0 670 242 98 5 chr21 19766252 19766446 -15141124 - MIR SINE MIR -19 243 32 330 67 0 0 chr21 19766691 19766736 -15140834 - MADE1 DNA Mariner -35 45 1 677 228 96 16 chr21 19767051 19767406 -15140164 - MLT1C LTR MaLR -57 410 6 1831 167 7 0 chr21 19767605 19767911 -15139659 + AluSx SINE Alu 1 308 -4 1183 191 105 24 chr21 19768080 19768374 -15139196 + L1ME3A LINE L1 5842 6159 -11 1090 195 0 0 chr21 19768396 19768591 -15138979 + AluJo SINE Alu 1 195 -117 27 49 0 0 chr21 19768602 19768643 -15138927 + AT_rich Low_complexity Low_complexity 1 41 0 203 86 57 0 chr21 19768653 19768688 -15138882 + MIR SINE MIR 115 151 -111 2504 37 0 0 chr21 19769406 19769700 -15137870 - AluY SINE Alu -17 294 1 273 234 172 55 chr21 19769923 19770051 -15137519 + MIR SINE MIR 80 222 -40 815 138 0 22 chr21 19770053 19770191 -15137379 + FLAM_A SINE Alu 8 142 0 2082 120 3 0 chr21 19770239 19770538 -15137032 + AluSq SINE Alu 1 300 -13 728 152 0 8 chr21 19770592 19770710 -15136860 + FLAM_C SINE Alu 1 117 -16 233 215 19 112 chr21 19771154 19771261 -15136309 + L1ME LINE L1 5563 5659 -462 1961 148 3 0 chr21 19771311 19771622 -15135948 + AluJb SINE Alu 1 312 0 2253 73 0 7 chr21 19772279 19772582 -15134988 + AluY SINE Alu 1 301 -10 1891 139 16 7 chr21 19772824 19773133 -15134437 + AluSx SINE Alu 1 312 0 1649 150 18 0 chr21 19774070 19774370 -15133200 + AluSx SINE Alu 7 311 0 509 103 0 0 chr21 19774382 19774450 -15133120 + AluSx SINE Alu 9 76 -237 1496 131 4 0 chr21 19774554 19774791 -15132779 + AluSx SINE Alu 71 308 -2 1700 183 57 70 chr21 19774820 19774867 -15132703 + MLT1C LTR MaLR 2 48 -419 2313 72 0 0 chr21 19774867 19775158 -15132412 + AluY SINE Alu 1 291 -20 1700 183 57 70 chr21 19775158 19775580 -15131990 + MLT1C LTR MaLR 48 465 -2 38 39 0 0 chr21 19776185 19776237 -15131333 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr21 19776317 19776338 -15131232 + AT_rich Low_complexity Low_complexity 1 21 0 2206 110 0 0 chr21 19776405 19776715 -15130855 + AluSg SINE Alu 1 310 0 2099 107 10 7 chr21 19778268 19778576 -15128994 - AluSx SINE Alu -3 309 1 944 178 70 52 chr21 19778596 19778615 -15128955 - MER20 DNA MER1_type -2 217 200 1874 146 3 7 chr21 19778615 19778924 -15128646 - AluSx SINE Alu -4 308 1 944 178 70 52 chr21 19778924 19779117 -15128453 - MER20 DNA MER1_type -19 200 1 4443 180 40 17 chr21 19779488 19779977 -15127593 + L1MB7 LINE L1 5174 5650 -534 2195 112 0 10 chr21 19779977 19780291 -15127279 + AluSx SINE Alu 1 311 -1 4443 180 40 17 chr21 19780291 19780793 -15126777 + L1MB7 LINE L1 5650 6184 0 2109 111 0 16 chr21 19781064 19781379 -15126191 + AluSg SINE Alu 1 310 0 1100 153 0 12 chr21 19781397 19781574 -15125996 + AluSg/x SINE Alu 142 309 -1 1802 137 32 14 chr21 19781605 19781889 -15125681 + AluJb SINE Alu 13 301 -11 1735 65 0 0 chr21 19782184 19782384 -15125186 - AluSg/x SINE Alu -3 307 108 2251 123 13 0 chr21 19782628 19782936 -15124634 + AluSq SINE Alu 2 313 0 22 0 0 0 chr21 19785263 19785285 -15122285 + AT_rich Low_complexity Low_complexity 1 22 0 574 283 57 19 chr21 19787520 19787732 -15119838 - MIR SINE MIR -30 232 13 21 36 0 0 chr21 19788130 19788158 -15119412 + GC_rich Low_complexity Low_complexity 1 28 0 343 267 89 0 chr21 19790893 19790994 -15116576 + L2 LINE L2 3204 3313 0 848 178 49 97 chr21 19791358 19791546 -15116024 + MIR SINE MIR 18 193 -69 2259 115 0 6 chr21 19791546 19791858 -15115712 + AluSx SINE Alu 1 310 -2 848 178 49 97 chr21 19791858 19791916 -15115654 + MIR SINE MIR 193 252 -10 615 280 30 12 chr21 19792161 19792329 -15115241 + MIR SINE MIR 18 188 -74 1861 117 99 3 chr21 19792444 19792727 -15114843 + AluSx SINE Alu 1 310 -2 2299 93 0 3 chr21 19792971 19793293 -15114277 - AluSg SINE Alu 0 310 1 525 242 23 23 chr21 19793746 19793878 -15113692 + L2 LINE L2 3181 3312 -1 2081 114 7 0 chr21 19793998 19794279 -15113291 + AluSq SINE Alu 1 283 -30 310 217 29 14 chr21 19794286 19794355 -15113215 + L1MCa LINE L1 1995 2064 -4362 25 0 0 0 chr21 19794355 19794380 -15113190 + AT_rich Low_complexity Low_complexity 1 25 0 2279 94 3 23 chr21 19794384 19794693 -15112877 + AluSq SINE Alu 2 304 -9 1912 177 177 7 chr21 19794697 19795120 -15112450 + LTR44 LTR ERV1 25 519 0 305 236 101 11 chr21 19795254 19795343 -15112227 + MER5A DNA MER1_type 9 105 -84 2017 128 3 3 chr21 19795413 19795717 -15111853 - AluSx SINE Alu 0 306 3 2141 128 0 16 chr21 19795728 19796041 -15111529 - AluSx SINE Alu -4 308 1 245 164 0 18 chr21 19797163 19797218 -15110352 + CT-rich Low_complexity Low_complexity 2 55 0 757 197 30 107 chr21 19797226 19797374 -15110196 + MIR SINE MIR 13 138 -124 2398 63 0 30 chr21 19797374 19797677 -15109893 + AluY SINE Alu 1 294 -17 757 197 30 107 chr21 19797677 19797761 -15109809 + MIR SINE MIR 138 227 -35 2030 139 17 3 chr21 19797832 19798126 -15109444 + AluSx SINE Alu 1 298 -14 1763 156 3 11 chr21 19798466 19798749 -15108821 - AluJb SINE Alu -27 285 5 22 0 0 0 chr21 19799209 19799231 -15108339 + AT_rich Low_complexity Low_complexity 1 22 0 1929 168 17 57 chr21 19799276 19799590 -15107980 - MLT1B LTR MaLR 0 390 94 2104 109 35 0 chr21 19799590 19799875 -15107695 + AluSc SINE Alu 1 295 -14 1929 168 17 57 chr21 19799875 19799966 -15107604 - MLT1B LTR MaLR -296 94 1 1942 157 3 3 chr21 19800021 19800321 -15107249 + AluJb SINE Alu 3 302 -10 2381 75 13 10 chr21 19800323 19800631 -15106939 + AluSp SINE Alu 1 309 -4 1930 162 3 10 chr21 19801452 19801761 -15105809 + AluJo SINE Alu 1 307 -5 2113 108 3 38 chr21 19801803 19802118 -15105452 - AluSx SINE Alu -8 304 1 691 178 46 13 chr21 19802327 19802479 -15105091 - MLT1D LTR MaLR 0 505 349 2302 115 0 0 chr21 19802579 19802883 -15104687 - AluSx SINE Alu 0 312 9 250 211 0 0 chr21 19803510 19803562 -15104008 + MLT1L LTR MaLR 125 176 -439 2079 152 3 3 chr21 19804024 19804334 -15103236 + AluSx SINE Alu 1 310 -2 1617 200 27 10 chr21 19804384 19804679 -15102891 + AluJb SINE Alu 1 300 -12 2455 97 0 0 chr21 19804737 19805046 -15102524 - AluSg SINE Alu -1 309 1 412 82 49 0 chr21 19805203 19805264 -15102306 - Alu SINE Alu -15 296 233 4016 109 8 71 chr21 19805305 19805866 -15101704 - LTR9 LTR ERV1 -1 611 16 2297 70 3 11 chr21 19805866 19806152 -15101418 + AluSp SINE Alu 2 285 -28 4016 109 8 71 chr21 19806152 19806214 -15101356 - LTR9 LTR ERV1 -596 16 27 2401 102 0 0 chr21 19806214 19806519 -15101051 - AluSx SINE Alu -7 305 1 4016 109 8 71 chr21 19806519 19806546 -15101024 - LTR9 LTR ERV1 -584 28 1 649 304 43 82 chr21 19806603 19807185 -15100385 + MLT1K LTR MaLR 7 565 -23 2345 91 0 3 chr21 19807992 19808289 -15099281 + AluSx SINE Alu 1 296 -16 2249 123 0 3 chr21 19808289 19808597 -15098973 + AluSx SINE Alu 1 308 -4 2287 92 7 0 chr21 19808597 19808880 -15098690 + AluSq SINE Alu 1 285 -28 710 244 106 0 chr21 19808930 19809090 -15098480 - MER45A DNA AcHobo 0 178 2 289 248 88 44 chr21 19809195 19809308 -15098262 - MER103 DNA DNA -44 122 5 2406 88 0 19 chr21 19809659 19809967 -15097603 + AluSc SINE Alu 1 302 -7 353 262 97 10 chr21 19810320 19810423 -15097147 + MIR SINE MIR 46 157 -105 2375 94 3 0 chr21 19810611 19810918 -15096652 + AluSg SINE Alu 1 308 -2 266 246 87 0 chr21 19811223 19811292 -15096278 + MER5A DNA MER1_type 11 85 -104 833 118 0 0 chr21 19811293 19811403 -15096167 - FLAM_A SINE Alu -15 127 18 1905 172 0 3 chr21 19811530 19811827 -15095743 - AluJb SINE Alu -16 296 1 2158 108 7 0 chr21 19812190 19812503 -15095067 + AluSg SINE Alu 1 315 0 2042 124 48 3 chr21 19813030 19813320 -15094250 + AluSx SINE Alu 5 307 -5 4625 24 0 4 chr21 19814038 19814535 -15093035 - SVA Other Other 0 1386 892 2255 113 3 0 chr21 19814535 19814835 -15092735 - AluSx SINE Alu -11 301 1 2188 123 7 3 chr21 19815157 19815467 -15092103 - AluSq SINE Alu 0 313 3 218 316 60 30 chr21 19815568 19815701 -15091869 + MIR3 SINE MIR 13 149 -59 2084 112 26 49 chr21 19815783 19816088 -15091482 + AluSx SINE Alu 1 298 -14 2321 79 45 0 chr21 19817142 19817433 -15090137 + AluSq SINE Alu 1 304 -9 208 240 100 107 chr21 19817499 19817649 -15089921 + L3 LINE CR1 1140 1288 -289 205 205 0 0 chr21 19817672 19817711 -15089859 + (TA)n Simple_repeat Simple_repeat 1 39 0 1653 178 25 32 chr21 19817948 19818262 -15089308 + AluJb SINE Alu 1 312 0 320 136 0 30 chr21 19818273 19818339 -15089231 + (GGGAA)n Simple_repeat Simple_repeat 4 67 0 451 80 11 91 chr21 19818432 19818520 -15089050 + MLT1A1 LTR MaLR 1 81 -284 2427 93 0 0 chr21 19818520 19818831 -15088739 + AluY SINE Alu 1 311 0 241 77 0 0 chr21 19818857 19818896 -15088674 + MER65B LTR ERV1 6 44 -487 784 160 14 0 chr21 19818923 19819067 -15088503 + MER65B LTR ERV1 40 185 -346 979 98 15 8 chr21 19819069 19819201 -15088369 + FLAM_C SINE Alu 1 133 -10 1650 121 26 4 chr21 19819202 19819467 -15088103 + MER65A LTR ERV1 175 445 0 2211 99 7 16 chr21 19819523 19819827 -15087743 + AluSx SINE Alu 1 301 -11 1253 184 20 95 chr21 19819856 19820150 -15087420 + AluJb SINE Alu 2 273 -39 276 30 0 0 chr21 19820155 19820188 -15087382 + (CA)n Simple_repeat Simple_repeat 2 34 0 509 235 44 73 chr21 19820188 19820392 -15087178 + L1ME3 LINE L1 5964 6161 -1 2253 123 0 10 chr21 19820803 19820938 -15086632 + AluSx SINE Alu 1 136 -176 1804 110 3 80 chr21 19820938 19821238 -15086332 + AluSc SINE Alu 22 298 -11 2253 123 0 10 chr21 19821238 19821411 -15086159 + AluSx SINE Alu 136 306 -6 2285 114 0 0 chr21 19821421 19821719 -15085851 + AluSx SINE Alu 1 298 -14 291 333 90 8 chr21 19821825 19822059 -15085511 - L2 LINE L2 -200 3072 2820 1509 159 0 0 chr21 19822206 19822438 -15085132 + AluJo SINE Alu 65 296 -16 320 252 234 0 chr21 19822486 19822593 -15084977 - MIR3 SINE MIR -43 165 34 758 192 41 6 chr21 19822664 19822836 -15084734 - Charlie1 DNA MER1_type -2517 244 67 214 228 70 18 chr21 19822863 19822920 -15084650 + MER91C DNA MER1_type 49 108 -32 819 169 26 0 chr21 19823593 19823747 -15083823 + MER33 DNA MER1_type 1 158 -166 613 126 9 0 chr21 19823819 19823930 -15083640 + MER33 DNA MER1_type 191 302 -22 2254 104 7 3 chr21 19824063 19824370 -15083200 - AluSx SINE Alu -4 308 1 484 216 0 27 chr21 19824552 19824663 -15082907 - MIR SINE MIR -144 118 11 1404 214 58 33 chr21 19824802 19825167 -15082403 + MLT1A2 LTR MaLR 1 374 0 1514 143 139 4 chr21 19825621 19825887 -15081683 - AluSx SINE Alu 0 302 1 3391 148 0 26 chr21 19826249 19826789 -15080781 + MER1A DNA MER1_type 1 526 -1 2305 84 0 7 chr21 19827012 19827322 -15080248 + AluSx SINE Alu 1 308 0 659 164 8 0 chr21 19827346 19827474 -15080096 + CT-rich Low_complexity Low_complexity 1 129 0 1434 170 43 0 chr21 19827474 19827709 -15079861 - AluJo SINE Alu -10 302 58 867 267 81 16 chr21 19827769 19828268 -15079302 + MLT1G1 LTR MaLR 18 594 -1 776 144 24 16 chr21 19828293 19828418 -15079152 + FLAM_C SINE Alu 2 127 -16 22 0 0 0 chr21 19828418 19828440 -15079130 + AT_rich Low_complexity Low_complexity 1 22 0 2176 116 0 0 chr21 19828898 19829183 -15078387 - AluSg SINE Alu -10 300 16 207 0 0 0 chr21 19829498 19829521 -15078049 + (T)n Simple_repeat Simple_repeat 1 23 0 523 354 45 5 chr21 19829874 19830072 -15077498 - MIR SINE MIR -9 253 48 2236 107 7 0 chr21 19830337 19830628 -15076942 + AluSx SINE Alu 5 297 -15 767 178 27 120 chr21 19830771 19830996 -15076574 + MLT1B LTR MaLR 187 390 0 415 174 0 82 chr21 19831009 19831107 -15076463 + MLT1C LTR MaLR 57 146 -321 1721 156 0 52 chr21 19831120 19831236 -15076334 + AluJb SINE Alu 1 121 -191 2016 129 0 16 chr21 19831236 19831553 -15076017 - AluSx SINE Alu 0 312 1 1721 156 0 52 chr21 19831553 19831763 -15075807 + AluJb SINE Alu 121 310 -2 293 200 0 93 chr21 19831837 19831912 -15075658 + MLT1J LTR MaLR 111 178 -333 2055 104 6 28 chr21 19832072 19832382 -15075188 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr21 19832382 19832402 -15075168 + (CAG)n Simple_repeat Simple_repeat 2 21 0 224 207 17 35 chr21 19832418 19832439 -15075131 + GA-rich Low_complexity Low_complexity 2 22 -36 2042 102 0 30 chr21 19832439 19832744 -15074826 + AluSg SINE Alu 1 296 -14 224 207 17 35 chr21 19832744 19832780 -15074790 + GA-rich Low_complexity Low_complexity 22 58 0 483 255 10 0 chr21 19832957 19833055 -15074515 + MER45 DNA AcHobo 1 99 -1482 369 106 0 0 chr21 19833055 19833102 -15074468 + MER45 DNA AcHobo 1532 1578 -3 514 331 64 19 chr21 19833112 19833378 -15074192 + L3 LINE CR1 565 842 -735 255 61 0 0 chr21 19833728 19833761 -15073809 + (CA)n Simple_repeat Simple_repeat 2 34 0 2133 116 0 0 chr21 19834281 19834582 -15072988 + AluSx SINE Alu 1 301 -11 212 309 149 0 chr21 19834584 19834678 -15072892 + MIR SINE MIR 154 261 -1 331 313 70 0 chr21 19835192 19835307 -15072263 + MIR SINE MIR 20 142 -120 310 225 0 28 chr21 19835365 19835436 -15072134 + Charlie2 DNA MER1_type 45 113 -2669 2052 133 45 11 chr21 19835445 19835797 -15071773 + MSTA LTR MaLR 1 364 -64 1039 153 0 0 chr21 19835797 19835960 -15071610 - AluSg/x SINE Alu -16 294 132 2262 97 0 0 chr21 19835960 19836259 -15071311 - AluSx SINE Alu -13 299 1 734 251 78 16 chr21 19836412 19836667 -15070903 + Charlie2 DNA MER1_type 1857 2127 -735 414 234 109 0 chr21 19836669 19836806 -15070764 - L1MD2 LINE L1 -10 6349 6198 1327 180 88 43 chr21 19836811 19836859 -15070711 - L1MD2 LINE L1 -218 6141 6097 1898 120 28 0 chr21 19836859 19837142 -15070428 + AluSx SINE Alu 6 296 -16 1327 180 88 43 chr21 19837142 19837312 -15070258 - L1MD2 LINE L1 -262 6097 5900 1798 141 3 0 chr21 19837312 19837596 -15069974 - AluJo SINE Alu -22 290 6 1327 180 88 43 chr21 19837596 19837717 -15069853 - L1MD2 LINE L1 -459 5900 5786 1671 155 54 0 chr21 19837744 19838191 -15069379 + AluJb SINE Alu 1 463 0 256 132 0 0 chr21 19838198 19838236 -15069334 - Alu SINE Alu -264 38 1 2209 96 0 88 chr21 19838236 19838267 -15069303 + MER4E LTR ERV1 424 456 -310 1938 121 0 0 chr21 19838267 19838586 -15068984 - AluSq SINE Alu 0 321 3 2209 96 0 88 chr21 19838586 19838929 -15068641 + MER4E LTR ERV1 456 766 0 26 50 0 0 chr21 19839042 19839082 -15068488 + AT_rich Low_complexity Low_complexity 1 40 0 348 138 172 0 chr21 19839082 19839140 -15068430 + AluS SINE Alu 1 68 -234 667 190 62 22 chr21 19839248 19839427 -15068143 - LTR16A1 LTR ERVL 0 457 272 1525 82 0 10 chr21 19839774 19839980 -15067590 - MER9 LTR ERVK -2 509 306 486 135 0 0 chr21 19840024 19840098 -15067472 - MER9 LTR ERVK -178 333 260 1933 117 35 3 chr21 19840134 19840417 -15067153 - MER9 LTR ERVK -219 292 1 556 282 33 33 chr21 19840686 19840709 -15066861 - MIR SINE MIR -80 182 160 2072 116 7 0 chr21 19840709 19841010 -15066560 - AluSx SINE Alu -9 303 1 556 282 33 33 chr21 19841010 19841167 -15066403 - MIR SINE MIR -101 161 2 2231 153 16 11 chr21 19841561 19841933 -15065637 + THE1C LTR MaLR 1 374 -1 1955 171 11 0 chr21 19842078 19842429 -15065141 - L1MB3 LINE L1 0 6183 5829 2107 111 7 0 chr21 19842443 19842740 -15064830 + AluSx SINE Alu 1 299 -13 243 284 49 29 chr21 19843520 19843622 -15063948 + LTR33 LTR ERVL 386 489 -32 2195 103 0 0 chr21 19843786 19844098 -15063472 + AluSx SINE Alu 1 312 0 1975 141 6 6 chr21 19844480 19844792 -15062778 + AluSx SINE Alu 1 312 0 372 94 0 0 chr21 19844796 19844849 -15062721 + (GAAAA)n Simple_repeat Simple_repeat 2 54 0 589 84 0 84 chr21 19844849 19845003 -15062567 + (GGGGA)n Simple_repeat Simple_repeat 2 142 0 2292 97 0 0 chr21 19845397 19845707 -15061863 + AluSx SINE Alu 1 310 -2 1693 139 47 121 chr21 19846059 19846153 -15061417 + MLT2D LTR ERVL 1 100 -314 1861 123 0 55 chr21 19846153 19846463 -15061107 - AluSx SINE Alu -19 293 1 1693 139 47 121 chr21 19846463 19846489 -15061081 + MLT2D LTR ERVL 100 126 -288 1538 169 25 3 chr21 19846489 19846773 -15060797 + AluJo SINE Alu 1 290 -22 1693 139 47 121 chr21 19846773 19846992 -15060578 + MLT2D LTR ERVL 126 309 -105 2179 82 3 3 chr21 19846992 19847283 -15060287 - AluSx SINE Alu -8 304 14 1693 139 47 121 chr21 19847283 19847345 -15060225 + MLT2D LTR ERVL 309 374 -40 1806 151 3 3 chr21 19847487 19847772 -15059798 - AluJo SINE Alu -27 285 1 2168 112 10 0 chr21 19848459 19848764 -15058806 - AluSq SINE Alu -5 308 1 2231 203 36 61 chr21 19848812 19848952 -15058618 + MLT1F LTR MaLR 1 143 -399 1841 144 67 28 chr21 19848952 19849313 -15058257 + THE1C LTR MaLR 1 375 0 2231 203 36 61 chr21 19849313 19849728 -15057842 + MLT1F LTR MaLR 143 542 0 206 31 0 31 chr21 19849742 19849774 -15057796 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1462 124 0 14 chr21 19849776 19849994 -15057576 - AluSg/x SINE Alu -24 286 72 743 181 0 0 chr21 19849994 19850121 -15057449 - FRAM SINE Alu -55 121 1 798 105 0 0 chr21 19850123 19850237 -15057333 - L1MB3 LINE L1 -230 5953 5840 2184 189 52 74 chr21 19850237 19850837 -15056733 - LTR9 LTR ERV1 0 612 24 2169 99 0 13 chr21 19850837 19851140 -15056430 - AluSc SINE Alu -10 299 1 1823 128 39 4 chr21 19851152 19851433 -15056137 - AluSx SINE Alu -21 291 1 271 206 116 62 chr21 19851436 19851582 -15055988 - L1MC4 LINE L1 -894 7148 6995 448 243 20 11 chr21 19851551 19851830 -15055740 - L1ME4a LINE L1 -182 5939 5649 964 127 0 0 chr21 19851830 19851964 -15055606 + AluY SINE Alu 1 134 -177 2149 106 3 3 chr21 19851964 19852266 -15055304 + AluSg SINE Alu 1 302 -8 477 0 0 0 chr21 19852266 19852319 -15055251 + (TA)n Simple_repeat Simple_repeat 1 53 0 374 257 69 0 chr21 19852465 19852566 -15055004 - L1ME4a LINE L1 -2298 5510 5403 487 170 30 7 chr21 19852855 19852990 -15054580 + CT-rich Low_complexity Low_complexity 3 140 0 2018 218 92 29 chr21 19853094 19853607 -15053963 - MER77 LTR ERV1 -4 601 57 1935 129 3 3 chr21 19854908 19855202 -15052368 + AluSg SINE Alu 1 294 -16 607 80 11 0 chr21 19856187 19856275 -15051295 + L1PA7 LINE L1 6063 6151 -3 2427 65 0 0 chr21 19856325 19856631 -15050939 - AluY SINE Alu -5 306 1 748 93 14 86 chr21 19858796 19858935 -15048635 - THE1B LTR MaLR -83 281 153 2199 95 10 0 chr21 19858937 19859231 -15048339 + AluSx SINE Alu 3 299 -13 1162 135 0 21 chr21 19859278 19859470 -15048100 + AluSq SINE Alu 121 308 -5 202 220 0 102 chr21 19860020 19860079 -15047491 - L2 LINE L2 -580 2734 2682 344 273 34 0 chr21 19860322 19860410 -15047160 - L2 LINE L2 -4 3309 3219 1798 148 32 0 chr21 19860424 19860707 -15046863 + AluJo SINE Alu 1 292 -20 4927 176 16 24 chr21 19860960 19861128 -15046442 - L1MB1 LINE L1 -2 6402 6234 2115 120 3 0 chr21 19861128 19861429 -15046141 + AluSx SINE Alu 1 302 -10 4927 176 16 24 chr21 19861429 19861836 -15045734 - L1MB1 LINE L1 -170 6234 5825 198 0 0 0 chr21 19861836 19861858 -15045712 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 1903 88 26 69 chr21 19861858 19862163 -15045407 - AluSq SINE Alu -21 292 1 4927 176 16 24 chr21 19862163 19862364 -15045206 - L1MB1 LINE L1 -578 5826 5625 2139 159 77 15 chr21 19862364 19862532 -15045038 + MSTA LTR MaLR 1 157 -271 1739 117 12 0 chr21 19862532 19862789 -15044781 + AluJb SINE Alu 37 296 -16 2139 159 77 15 chr21 19862789 19863023 -15044547 + MSTA LTR MaLR 157 428 0 4927 176 16 24 chr21 19863023 19864012 -15043558 - L1MB1 LINE L1 -779 5625 4645 730 59 0 170 chr21 19864014 19864149 -15043421 - FLAM_C SINE Alu -30 113 2 804 73 0 9 chr21 19864258 19864367 -15043203 - AluY SINE Alu -16 295 188 2539 205 91 62 chr21 19864367 19864491 -15043079 - L1MB1 LINE L1 -3066 3316 3197 1520 180 0 37 chr21 19864491 19864814 -15042756 - AluJo SINE Alu -1 311 1 2539 205 91 62 chr21 19864814 19864865 -15042705 - L1MB1 LINE L1 -3185 3197 3149 1722 139 12 74 chr21 19864865 19865189 -15042381 - AluJb SINE Alu -8 304 1 2539 205 91 62 chr21 19865189 19865298 -15042272 - L1MB1 LINE L1 -3233 3149 3045 1013 260 111 14 chr21 19865298 19865659 -15041911 + MSTD LTR MaLR 1 396 0 2539 205 91 62 chr21 19865659 19866319 -15041251 - L1MB1 LINE L1 -3337 3045 2343 766 129 0 0 chr21 19866320 19866436 -15041134 - AluSx SINE Alu -1 308 193 1078 110 0 0 chr21 19866437 19866583 -15040987 - AluSx SINE Alu -167 146 1 319 291 127 42 chr21 19866612 19866849 -15040721 - L1MEc LINE L1 -4191 2205 1949 1290 241 14 34 chr21 19866854 19867343 -15040227 - L1MB1 LINE L1 -4330 2052 1498 215 30 0 30 chr21 19867369 19867402 -15040168 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1499 190 4 0 chr21 19867405 19867684 -15039886 - AluJo SINE Alu -31 281 2 2302 185 26 70 chr21 19867687 19867943 -15039627 - L1MB3 LINE L1 -43 6140 5919 1544 176 15 7 chr21 19867943 19868215 -15039355 - AluJo SINE Alu -36 276 3 2302 185 26 70 chr21 19868215 19868498 -15039072 - L1MB3 LINE L1 -264 5919 5625 2055 139 0 0 chr21 19868507 19868810 -15038760 - AluSx SINE Alu -9 303 1 1921 135 3 7 chr21 19868948 19869244 -15038326 + AluSx SINE Alu 1 295 -17 2097 127 0 0 chr21 19869249 19869549 -15038021 + AluSg SINE Alu 6 305 -5 1896 115 10 24 chr21 19869562 19869858 -15037712 - AluSq SINE Alu -21 292 1 391 320 86 49 chr21 19870155 19870399 -15037171 + L1MC/D LINE L1 5269 5521 -2287 1398 127 0 5 chr21 19870444 19870664 -15036906 - AluSg/x SINE Alu -8 302 84 550 187 16 24 chr21 19870842 19870957 -15036613 + MLT1C LTR MaLR 1 114 -353 260 139 0 0 chr21 19870957 19870993 -15036577 - MER1B DNA MER1_type 0 339 304 999 158 34 0 chr21 19870992 19871138 -15036432 - MER1B DNA MER1_type -146 151 1 1184 222 57 46 chr21 19871138 19871157 -15036413 + MLT1C LTR MaLR 108 125 -342 4259 96 28 35 chr21 19871157 19871255 -15036315 - LTR9B LTR ERV1 0 644 547 2533 26 7 3 chr21 19871255 19871563 -15036007 - AluY SINE Alu -2 309 1 4259 96 28 35 chr21 19871563 19872113 -15035457 - LTR9B LTR ERV1 -97 547 1 1184 222 57 46 chr21 19872113 19872444 -15035126 + MLT1C LTR MaLR 125 462 -5 1908 116 22 0 chr21 19872479 19872776 -15034794 + AluSx SINE Alu 1 303 0 1796 122 34 7 chr21 19872828 19873122 -15034448 - AluSx SINE Alu -10 302 1 1650 156 39 3 chr21 19873195 19873477 -15034093 + AluJb SINE Alu 1 292 -20 1984 107 0 0 chr21 19873487 19873757 -15033813 + AluSq SINE Alu 13 282 -31 186 43 0 0 chr21 19873760 19873783 -15033787 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1398 133 0 26 chr21 19873926 19874159 -15033411 + AluJb SINE Alu 82 308 -4 2173 70 0 17 chr21 19874458 19874766 -15032804 + AluY SINE Alu 1 303 0 2053 122 0 3 chr21 19875427 19875731 -15031839 - AluSx SINE Alu -9 303 1 1160 125 0 0 chr21 19875741 19875909 -15031661 - AluSg/x SINE Alu -8 302 135 1966 97 54 4 chr21 19875909 19876188 -15031382 - AluSg SINE Alu -17 293 1 738 269 60 19 chr21 19876549 19876765 -15030805 + L2 LINE L2 2311 2535 -779 1218 120 51 0 chr21 19877011 19877186 -15030384 + THE1B LTR MaLR 1 184 -180 2180 112 0 6 chr21 19877186 19877500 -15030070 + AluSq SINE Alu 1 312 -1 2316 82 0 3 chr21 19877500 19877805 -15029765 + AluY SINE Alu 1 304 -7 1198 124 21 16 chr21 19877805 19877998 -15029572 - MSTB LTR MaLR -34 392 199 315 200 0 0 chr21 19878025 19878080 -15029490 + MER5A DNA MER1_type 65 119 -70 334 283 30 17 chr21 19878105 19878305 -15029265 + L1MB7 LINE L1 29 498 -6357 1689 276 33 58 chr21 19878443 19878537 -15029033 + L1MB7 LINE L1 2428 2523 -4434 2339 84 3 3 chr21 19878537 19878845 -15028725 + AluSc SINE Alu 12 308 -1 1689 276 33 58 chr21 19878845 19879111 -15028459 + L1MB7 LINE L1 2523 2794 -4163 439 86 99 12 chr21 19879111 19879192 -15028378 + L1MA9 LINE L1 6225 6312 0 1689 276 33 58 chr21 19879192 19879371 -15028199 + L1MB7 LINE L1 2794 2976 -3981 1880 178 0 16 chr21 19879371 19879686 -15027884 + AluJo SINE Alu 1 310 -2 1689 276 33 58 chr21 19879686 19879925 -15027645 + L1MB7 LINE L1 2976 3110 -3847 1704 165 16 26 chr21 19879925 19880228 -15027342 + AluJb SINE Alu 1 300 -12 1689 276 33 58 chr21 19880228 19880570 -15027000 + L1MB7 LINE L1 3110 3459 -3498 1866 232 11 11 chr21 19880655 19881091 -15026479 + L1MB7 LINE L1 4546 4981 -1976 1433 206 7 10 chr21 19881075 19881371 -15026199 + L1MB7 LINE L1 6129 6423 -566 348 269 21 0 chr21 19881376 19881469 -15026101 + L1MB7 LINE L1 6459 6553 -436 2556 129 42 30 chr21 19881499 19881512 -15026058 - MLT1C LTR MaLR -18 438 427 2051 137 3 3 chr21 19881512 19881818 -15025752 + AluSx SINE Alu 1 306 -6 2556 129 42 30 chr21 19881818 19882205 -15025365 - MLT1C LTR MaLR -29 427 45 2332 60 28 0 chr21 19882205 19882490 -15025080 + AluY SINE Alu 1 293 -18 2556 129 42 30 chr21 19882490 19882536 -15025034 - MLT1C LTR MaLR -411 45 1 1531 258 30 23 chr21 19882537 19882971 -15024599 + L1MB7 LINE L1 6550 6986 -9 1986 152 0 0 chr21 19883052 19883354 -15024216 - AluJb SINE Alu -10 302 1 1141 113 29 35 chr21 19883590 19883803 -15023767 - MER30 DNA MER1_type 0 230 18 1045 144 0 23 chr21 19883975 19884148 -15023422 + AluJ SINE Alu 1 169 -143 3726 142 85 28 chr21 19884148 19885053 -15022517 + pTR5 LTR ERV1 743 2025 -413 277 237 65 0 chr21 19885053 19885146 -15022424 + LTR30 LTR ERV1 544 642 -80 2483 83 0 0 chr21 19885146 19885473 -15022097 + pTR5 LTR ERV1 66 392 -2046 827 207 0 0 chr21 19885473 19885618 -15021952 + AluJ SINE Alu 166 310 -2 314 138 12 125 chr21 19886267 19886347 -15021223 + MER5B DNA MER1_type 108 178 0 815 168 15 15 chr21 19886402 19886539 -15021031 + AluJo SINE Alu 158 294 -18 332 284 8 0 chr21 19886730 19886864 -15020706 + CT-rich Low_complexity Low_complexity 4 138 0 1105 137 0 0 chr21 19886987 19887140 -15020430 - AluJb SINE Alu -28 284 132 667 219 55 27 chr21 19887186 19887369 -15020201 - MER115 DNA AcHobo -118 575 388 2309 91 7 3 chr21 19887508 19887815 -15019755 + AluSx SINE Alu 1 308 -4 970 165 106 32 chr21 19887815 19888003 -15019567 + MER20 DNA MER1_type 1 202 -17 188 331 94 39 chr21 19888193 19888320 -15019250 - L3 LINE CR1 -104 1473 1340 2029 120 0 14 chr21 19888656 19888947 -15018623 + AluJb SINE Alu 1 287 -25 218 202 9 64 chr21 19890113 19890222 -15017348 + G-rich Low_complexity Low_complexity 4 106 0 467 275 53 41 chr21 19890687 19890858 -15016712 + MER5B DNA MER1_type 1 173 -5 2306 52 3 7 chr21 19891457 19891747 -15015823 - AluSc SINE Alu -20 289 1 305 311 37 19 chr21 19891974 19892135 -15015435 + Charlie8 DNA MER1_type 52 215 -2202 2507 53 3 3 chr21 19892818 19893118 -15014452 + AluY SINE Alu 1 300 -11 964 43 0 9 chr21 19893321 19893437 -15014133 + AluY SINE Alu 178 292 -19 352 286 64 36 chr21 19893667 19893807 -15013763 - MIR SINE MIR -109 153 10 1801 137 17 20 chr21 19894064 19894356 -15013214 - AluJb SINE Alu -19 293 3 2453 66 7 0 chr21 19894700 19895001 -15012569 - AluY SINE Alu -8 303 1 25 31 0 0 chr21 19895245 19895277 -15012293 + AT_rich Low_complexity Low_complexity 1 32 0 247 150 25 0 chr21 19895277 19895317 -15012253 - MER57A LTR ERV1 -66 337 297 291 323 71 8 chr21 19895917 19896044 -15011526 - MIR3 SINE MIR 0 208 74 2251 116 0 7 chr21 19896056 19896359 -15011211 - AluSx SINE Alu -11 301 1 180 77 0 0 chr21 19900714 19900740 -15006830 + (CA)n Simple_repeat Simple_repeat 1 26 0 26 0 0 0 chr21 19901187 19901213 -15006357 + AT_rich Low_complexity Low_complexity 1 26 0 285 188 0 0 chr21 19902029 19902109 -15005461 + (CTG)n Simple_repeat Simple_repeat 3 82 0 192 336 97 48 chr21 19905185 19905453 -15002117 - L2 LINE L2 -383 2931 2651 463 299 53 10 chr21 19906249 19906456 -15001114 + L2 LINE L2 727 942 -2372 415 214 64 43 chr21 19906604 19906744 -15000826 + L2 LINE L2 1198 1340 -1974 1727 177 60 27 chr21 19906763 19907164 -15000406 - L1MB8 LINE L1 0 6178 5765 1368 268 88 36 chr21 19907195 19907832 -14999738 + L2 LINE L2 1420 2089 -1225 603 240 48 27 chr21 19907837 19907983 -14999587 + MIR SINE MIR 1 149 -113 413 258 15 45 chr21 19908093 19908225 -14999345 + L2 LINE L2 2123 2250 -1064 977 225 197 36 chr21 19908267 19908739 -14998831 + L2 LINE L2 2332 2879 -435 402 268 47 47 chr21 19908960 19909087 -14998483 + L2 LINE L2 3187 3313 0 1866 88 8 4 chr21 19912227 19912476 -14995094 + AluSc SINE Alu 44 293 -16 222 214 226 12 chr21 19913278 19913362 -14994208 - L2 LINE L2 -88 3225 3124 21 57 0 0 chr21 19914079 19914114 -14993456 + AT_rich Low_complexity Low_complexity 1 35 0 207 88 29 0 chr21 19915066 19915100 -14992470 + (TGGGGG)n Simple_repeat Simple_repeat 1 35 0 2489 84 0 3 chr21 19916006 19916317 -14991253 + AluSx SINE Alu 1 310 -2 410 233 129 6 chr21 19916481 19916686 -14990884 + MIR SINE MIR 10 262 0 1912 159 44 13 chr21 19916710 19917025 -14990545 + MER1B DNA MER1_type 14 338 -1 391 274 28 85 chr21 19917350 19917579 -14989991 - MIR SINE MIR -12 250 37 2106 119 6 28 chr21 19917911 19918230 -14989340 + AluSx SINE Alu 1 312 0 942 222 85 5 chr21 19918720 19918932 -14988638 - MIR SINE MIR -20 242 14 294 264 104 9 chr21 19919142 19919248 -14988322 + L2 LINE L2 3143 3258 -14 2018 130 0 44 chr21 19919380 19919695 -14987875 - AluSx SINE Alu -11 301 1 2043 104 13 29 chr21 19919737 19920045 -14987525 + AluSx SINE Alu 5 307 -5 2078 124 13 0 chr21 19920288 19920586 -14986984 + AluSx SINE Alu 1 302 -10 23 33 0 0 chr21 19921747 19921777 -14985793 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr21 19921862 19921887 -14985683 + AT_rich Low_complexity Low_complexity 1 25 0 343 312 32 40 chr21 19922785 19922910 -14984660 - MIR SINE MIR -69 139 16 24 0 0 0 chr21 19926428 19926452 -14981118 + AT_rich Low_complexity Low_complexity 1 24 0 500 304 35 23 chr21 19927505 19927676 -14979894 - MIR SINE MIR -62 200 28 1850 149 53 108 chr21 19928580 19929071 -14978499 + MLT2C2 LTR ERVL 1 464 0 611 274 49 0 chr21 19930047 19930211 -14977359 - AluSq SINE Alu -6 307 136 210 37 0 0 chr21 19930257 19930284 -14977286 + (CA)n Simple_repeat Simple_repeat 2 28 0 204 211 42 0 chr21 19930288 19930359 -14977211 + (TA)n Simple_repeat Simple_repeat 2 75 0 782 140 0 0 chr21 19930376 19930490 -14977080 - FLAM_C SINE Alu -18 115 2 325 283 43 0 chr21 19930499 19930591 -14976979 + L1MC/D LINE L1 5711 5806 -2002 183 129 0 0 chr21 19930821 19930852 -14976718 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr21 19933383 19933405 -14974165 + AT_rich Low_complexity Low_complexity 1 22 0 1289 152 0 5 chr21 19933406 19933629 -14973941 - L1MB1 LINE L1 -2 6166 5945 26 74 0 0 chr21 19933795 19933849 -14973721 + AT_rich Low_complexity Low_complexity 1 54 0 353 260 114 8 chr21 19934492 19934615 -14972955 + L1MC/D LINE L1 5510 5645 -2163 26 0 0 0 chr21 19935684 19935710 -14971860 + AT_rich Low_complexity Low_complexity 1 26 0 958 151 0 0 chr21 19936009 19936155 -14971415 + AluSg/x SINE Alu 135 280 -30 1302 143 0 0 chr21 19937267 19937456 -14970114 + AluSg/x SINE Alu 110 298 -12 2150 89 40 13 chr21 19938191 19938493 -14969077 + AluSx SINE Alu 1 310 -2 243 88 0 0 chr21 19939436 19939470 -14968100 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 182 270 0 0 chr21 19940198 19940235 -14967335 - L2 LINE L2 -973 2341 2305 2349 98 0 0 chr21 19940357 19940663 -14966907 + AluSx SINE Alu 6 311 -1 199 182 68 0 chr21 19940944 19940988 -14966582 - L2 LINE L2 -1 3312 3266 440 189 0 0 chr21 19941116 19941190 -14966380 - FLAM_A SINE Alu -54 78 5 279 240 160 50 chr21 19941575 19941675 -14965895 - MIR SINE MIR -86 176 66 2015 143 7 0 chr21 19942296 19942603 -14964967 - AluSx SINE Alu -3 309 1 2379 83 0 3 chr21 19942613 19942915 -14964655 - AluSq SINE Alu -12 301 1 477 272 7 22 chr21 19943423 19943559 -14964011 + MIR SINE MIR 122 255 -7 396 314 72 41 chr21 19944121 19944315 -14963255 + MIR SINE MIR 49 248 -14 507 291 50 28 chr21 19944764 19944946 -14962624 + MIR SINE MIR 65 250 -12 1483 191 50 21 chr21 19945102 19945557 -14962013 - MLT1D LTR MaLR 0 505 13 292 313 93 41 chr21 19945671 19945969 -14961601 - L3 LINE CR1 -782 795 436 33 25 0 0 chr21 19947771 19947811 -14959759 + AT_rich Low_complexity Low_complexity 1 40 0 714 105 0 0 chr21 19947928 19948033 -14959537 + (CA)n Simple_repeat Simple_repeat 2 106 0 2305 89 0 7 chr21 19948039 19948331 -14959239 - AluSp SINE Alu -23 290 1 756 189 0 0 chr21 19948550 19948677 -14958893 - AluSq/x SINE Alu -182 131 5 2236 117 3 0 chr21 19949098 19949406 -14958164 + AluSp SINE Alu 5 313 0 2392 88 3 0 chr21 19949584 19949889 -14957681 - AluSp SINE Alu -7 306 1 288 283 90 10 chr21 19950671 19950774 -14956796 + MIR SINE MIR 40 150 -65 1067 154 57 9 chr21 19951060 19951287 -14956283 - L1MB8 LINE L1 0 6178 5941 1246 245 59 51 chr21 19951682 19951808 -14955762 + MER97c DNA MER1_type? 6 129 -961 2105 121 24 0 chr21 19951808 19952105 -14955465 - AluSx SINE Alu -8 304 1 1246 245 59 51 chr21 19952105 19952452 -14955118 + MER97c DNA MER1_type? 129 483 -607 2174 104 3 0 chr21 19952746 19953033 -14954537 + AluSg SINE Alu 1 288 -22 1371 125 0 5 chr21 19953324 19953569 -14954001 + AluSg/x SINE Alu 81 324 0 366 185 11 33 chr21 19953573 19953665 -14953905 + MER97c DNA MER1_type? 767 856 -234 180 0 0 0 chr21 19953683 19953703 -14953867 + (TG)n Simple_repeat Simple_repeat 1 20 0 485 182 135 16 chr21 19953731 19953857 -14953713 + MER97c DNA MER1_type? 950 1090 0 1825 186 48 57 chr21 19955666 19956122 -14951448 + Charlie1b DNA MER1_type 3 462 -2299 2547 54 0 0 chr21 19956122 19956416 -14951154 - AluY SINE Alu -16 295 2 1825 186 48 57 chr21 19956416 19956451 -14951119 + Charlie1b DNA MER1_type 462 491 -2270 1575 193 0 13 chr21 19956451 19956751 -14950819 + AluJb SINE Alu 1 296 -16 1825 186 48 57 chr21 19956751 19956784 -14950786 + Charlie1b DNA MER1_type 491 523 0 2158 131 0 3 chr21 19957143 19957448 -14950122 - AluSg SINE Alu -4 306 3 2221 86 7 0 chr21 19957585 19957876 -14949694 + AluSc SINE Alu 1 293 -16 369 269 0 77 chr21 19958573 19958677 -14948893 + MIR SINE MIR 44 139 -69 260 283 111 10 chr21 19960164 19960263 -14947307 - L2 LINE L2 -3 3310 3202 277 151 14 14 chr21 19962232 19962305 -14945265 + (CCCCG)n Simple_repeat Simple_repeat 4 76 0 39 0 0 0 chr21 19962348 19962387 -14945183 + GC_rich Low_complexity Low_complexity 1 39 0 287 238 194 31 chr21 19963553 19963713 -14943857 - MIR SINE MIR 0 262 77 249 288 30 76 chr21 19963723 19963959 -14943611 - L2 LINE L2 -963 2351 2127 1206 34 0 0 chr21 19964257 19964404 -14943166 - L1PA4 LINE L1 -3 6152 6006 2238 102 0 3 chr21 19964625 19964918 -14942652 + AluSx SINE Alu 7 298 -14 268 200 0 0 chr21 19965184 19965234 -14942336 - L2 LINE L2 -5 3267 3218 369 0 0 0 chr21 19965336 19965377 -14942193 + (A)n Simple_repeat Simple_repeat 1 41 0 1524 163 101 0 chr21 19966496 19966782 -14940788 - AluJo SINE Alu 0 312 1 680 161 15 51 chr21 19966785 19966922 -14940648 - AluJo/FLAM SINE Alu -180 132 1 439 154 0 0 chr21 19967039 19967117 -14940453 - L1M4 LINE L1 -882 5264 5187 2088 112 0 42 chr21 19967469 19967780 -14939790 - AluSx SINE Alu -14 298 1 360 261 36 27 chr21 19968059 19968170 -14939400 - L2 LINE L2 -1 3271 3160 2154 196 83 38 chr21 19968197 19968240 -14939330 - L1M4 LINE L1 -743 5472 5432 2334 93 0 0 chr21 19968240 19968540 -14939030 - AluSg SINE Alu -10 300 1 2154 196 83 38 chr21 19968540 19969253 -14938317 - L1M4 LINE L1 -783 5432 4682 2139 85 0 31 chr21 19969297 19969615 -14937955 + AluSg SINE Alu 1 309 0 2714 242 51 53 chr21 19969617 19969961 -14937609 - L1MEc LINE L1 -2196 4019 3676 2264 92 24 0 chr21 19969961 19970256 -14937314 - AluSq SINE Alu -11 302 1 2714 242 51 53 chr21 19970256 19970764 -14936806 - L1MEc LINE L1 -2539 3676 3169 2328 103 0 0 chr21 19970764 19971066 -14936504 - AluSg SINE Alu -8 302 1 2714 242 51 53 chr21 19971066 19971113 -14936457 - L1MEc LINE L1 -3046 3169 3123 1772 109 0 8 chr21 19971113 19971351 -14936219 - AluSx SINE Alu -15 297 62 2714 242 51 53 chr21 19971351 19971741 -14935829 - L1MEc LINE L1 -3092 3123 2730 2175 253 46 39 chr21 19971807 19971999 -14935571 - L1MEc LINE L1 -3453 2762 2573 2162 130 0 0 chr21 19971999 19972307 -14935263 - AluSx SINE Alu -4 308 1 2175 253 46 39 chr21 19972307 19972852 -14934718 - L1MEc LINE L1 -3642 2573 2034 2435 76 0 0 chr21 19972852 19973154 -14934416 - AluY SINE Alu -9 302 1 2175 253 46 39 chr21 19973154 19973487 -14934083 - L1MEc LINE L1 -4181 2034 1713 2116 122 3 3 chr21 19973487 19973783 -14933787 + AluSx SINE Alu 1 296 -16 2175 253 46 39 chr21 19973783 19973983 -14933587 - L1MEc LINE L1 -4502 1713 1516 1115 196 63 14 chr21 19974161 19974528 -14933042 - L1M4 LINE L1 -1050 5096 4695 453 155 0 0 chr21 19974546 19974617 -14932953 + MER5B DNA MER1_type 108 178 0 2504 64 0 0 chr21 19975148 19975444 -14932126 + AluY SINE Alu 1 296 -15 712 276 58 26 chr21 19975528 19975894 -14931676 - MLT1J LTR MaLR -69 442 3 2573 109 28 14 chr21 19975918 19976275 -14931295 + THE1B LTR MaLR 3 364 0 528 266 117 36 chr21 19976501 19976749 -14930821 - MLT1L LTR MaLR 0 615 348 2159 99 0 32 chr21 19976751 19977063 -14930507 - AluSp SINE Alu -11 302 1 411 165 0 24 chr21 19977153 19977238 -14930332 + AluS SINE Alu 229 311 0 599 241 97 51 chr21 19977244 19977481 -14930089 - MLT1L LTR MaLR -331 284 37 722 219 30 73 chr21 19978826 19978951 -14928619 + MER58A DNA MER1_type 2 114 -2306 1771 151 40 0 chr21 19978951 19979249 -14928321 - AluSg SINE Alu 0 310 1 722 219 30 73 chr21 19979249 19979356 -14928214 + MER58A DNA MER1_type 114 224 0 2189 116 0 0 chr21 19979763 19980073 -14927497 + AluSx SINE Alu 1 310 -2 1492 153 0 63 chr21 19980387 19980551 -14927019 - AluJo SINE Alu -30 282 144 2247 88 7 0 chr21 19980551 19980858 -14926712 - AluSg SINE Alu -1 309 1 1492 153 0 63 chr21 19980858 19980994 -14926576 - AluJo SINE Alu -168 144 1 1294 171 0 5 chr21 19981223 19981445 -14926125 + MER46B DNA MER2_type 6 101 -135 2113 118 0 10 chr21 19981445 19981759 -14925811 + AluSx SINE Alu 1 311 -1 782 175 58 0 chr21 19981787 19981924 -14925646 + MER46B DNA MER2_type 92 236 0 492 288 87 36 chr21 19981935 19982063 -14925507 - MIR SINE MIR -31 231 86 1485 142 18 0 chr21 19982063 19982288 -14925282 - MER30 DNA MER1_type -1 229 1 492 288 87 36 chr21 19982288 19982378 -14925192 - MIR SINE MIR -176 86 2 389 312 68 5 chr21 19982389 19982610 -14924960 - HERVL LTR ERVL -2339 3315 3081 844 282 92 10 chr21 19983128 19983533 -14924037 - HERVL LTR ERVL -3114 2540 2110 1396 120 60 5 chr21 19983750 19983870 -14923700 + MER30 DNA MER1_type 1 113 -117 180 0 0 0 chr21 19983870 19983890 -14923680 + (TA)n Simple_repeat Simple_repeat 2 21 0 1396 120 60 5 chr21 19983890 19983986 -14923584 + MER30 DNA MER1_type 113 229 -1 255 289 26 0 chr21 19984021 19984097 -14923473 - HERVL LTR ERVL -3835 1819 1742 253 180 0 66 chr21 19984496 19984557 -14923013 - LTR67 LTR ERVL -500 57 1 1395 150 29 77 chr21 19984987 19985300 -14922270 - AluJo SINE Alu -12 300 3 366 241 26 11 chr21 19985310 19985434 -14922136 + MLT1L LTR MaLR 455 609 -6 2221 104 0 3 chr21 19985668 19985976 -14921594 - AluSx SINE Alu -5 307 1 2009 137 3 3 chr21 19986415 19986728 -14920842 + AluSq SINE Alu 1 313 0 754 167 148 0 chr21 19987032 19987194 -14920376 + MIR SINE MIR 75 260 -2 28 0 0 0 chr21 19987272 19987300 -14920270 + AT_rich Low_complexity Low_complexity 1 28 0 944 161 126 15 chr21 19987461 19987660 -14919910 + MER58A DNA MER1_type 4 224 0 2123 110 7 3 chr21 19987677 19987977 -14919593 - AluSq SINE Alu -12 301 1 2067 121 0 0 chr21 19987990 19988279 -14919291 - AluSx SINE Alu -23 289 1 2300 78 3 0 chr21 19989583 19989878 -14917692 - AluSp SINE Alu -17 296 1 309 151 0 0 chr21 19989905 19989958 -14917612 + C-rich Low_complexity Low_complexity 1 53 0 343 50 0 0 chr21 19989958 19989998 -14917572 - AluSg/x SINE Alu -107 195 156 248 140 40 0 chr21 19990005 19990055 -14917515 + CT-rich Low_complexity Low_complexity 2 53 0 702 78 10 10 chr21 19990138 19990241 -14917329 + L1PA14 LINE L1 6052 6154 -7 1966 123 0 16 chr21 19990241 19990587 -14916983 + AluSx SINE Alu 1 312 0 744 195 0 0 chr21 19991127 19991281 -14916289 + CT-rich Low_complexity Low_complexity 3 156 0 2181 108 3 0 chr21 19991283 19991589 -14915981 - AluSx SINE Alu -5 307 1 2162 109 0 13 chr21 19992390 19992701 -14914869 - AluSx SINE Alu -5 307 1 291 54 0 0 chr21 19992908 19992945 -14914625 + (TG)n Simple_repeat Simple_repeat 2 38 0 1299 153 0 5 chr21 19993039 19993241 -14914329 - AluJb SINE Alu -27 285 85 854 265 27 18 chr21 19993334 19993557 -14914013 + MIR SINE MIR 7 231 -31 2864 46 6 0 chr21 19993846 19994194 -14913376 + L1PA5 LINE L1 5805 6154 0 250 205 60 72 chr21 19994260 19994343 -14913227 + MIR SINE MIR 118 199 -63 249 239 125 0 chr21 19994590 19994678 -14912892 - L1M4 LINE L1 -2167 3979 3881 1926 144 0 0 chr21 19994693 19994978 -14912592 - AluSx SINE Alu -27 285 1 220 211 0 66 chr21 19995095 19995144 -14912426 + (TA)n Simple_repeat Simple_repeat 1 45 -26 210 71 0 0 chr21 19995144 19995172 -14912398 + (TG)n Simple_repeat Simple_repeat 1 28 0 220 211 0 66 chr21 19995172 19995198 -14912372 + (TA)n Simple_repeat Simple_repeat 45 71 0 2331 119 65 3 chr21 19995202 19995555 -14912015 + THE1C LTR MaLR 1 375 0 10692 94 53 3 chr21 19995556 19997060 -14910510 + THE1C-int LTR MaLR 2 1580 0 1879 126 34 19 chr21 19997062 19997384 -14910186 + THE1C LTR MaLR 3 355 0 1584 172 0 39 chr21 19997396 19997704 -14909866 - AluJo SINE Alu -16 296 1 4974 71 21 1 chr21 19998104 19998762 -14908808 - L1PA13 LINE L1 0 6163 5493 660 288 60 64 chr21 19998781 19999575 -14907995 - L1M4 LINE L1 -2968 3178 2388 805 181 0 21 chr21 19999710 19999854 -14907716 - AluSg/x SINE Alu -45 264 124 2198 110 3 0 chr21 19999854 20000162 -14907408 - AluSp SINE Alu -4 309 1 1960 104 76 0 chr21 20000165 20000453 -14907117 - AluSx SINE Alu -2 310 1 308 180 58 50 chr21 20000647 20000733 -14906837 + MLT1J2 LTR MaLR 70 153 -256 249 339 121 0 chr21 20000921 20001045 -14906525 + L2 LINE L2 3134 3272 0 2432 60 3 0 chr21 20001082 20001384 -14906186 - AluY SINE Alu -8 303 1 566 312 61 12 chr21 20001582 20001829 -14905741 - MIR SINE MIR 0 262 4 1740 141 0 30 chr21 20002108 20002405 -14905165 - AluJb SINE Alu -24 288 1 1506 140 34 65 chr21 20002411 20002733 -14904837 - AluJo SINE Alu 0 312 1 386 265 52 52 chr21 20003045 20003181 -14904389 + MIR3 SINE MIR 45 180 -28 1792 152 0 71 chr21 20003793 20004116 -14903454 + AluJo SINE Alu 2 301 -1 1401 184 39 39 chr21 20004206 20004516 -14903054 + AluJb SINE Alu 3 312 0 186 375 52 10 chr21 20004910 20005006 -14902564 - MIR SINE MIR -77 185 86 776 293 15 5 chr21 20006195 20006400 -14901170 - MIR SINE MIR -26 236 30 758 165 0 0 chr21 20006693 20006814 -14900756 + FRAM SINE Alu 56 176 0 423 0 0 0 chr21 20006830 20006877 -14900693 + (CA)n Simple_repeat Simple_repeat 2 48 0 3345 106 2 2 chr21 20006985 20007437 -14900133 + MLT2A2 LTR ERVL 2 453 0 2097 198 90 4 chr21 20007537 20008002 -14899568 - MLT1D LTR MaLR 0 505 1 2696 94 17 8 chr21 20008152 20008513 -14899057 + THE1B LTR MaLR 1 364 0 357 251 58 82 chr21 20009146 20009317 -14898253 - MER20 DNA MER1_type -43 176 10 2122 100 3 13 chr21 20010068 20010367 -14897203 - AluSc SINE Alu -13 296 1 1770 143 10 16 chr21 20010625 20010933 -14896637 - AluJo SINE Alu 0 312 7 23 0 0 0 chr21 20011453 20011476 -14896094 + AT_rich Low_complexity Low_complexity 1 23 0 602 185 0 70 chr21 20011476 20011633 -14895937 - AluJo SINE Alu -86 226 81 786 328 65 55 chr21 20011633 20012392 -14895178 + L2 LINE L2 2262 3092 -221 2197 106 3 3 chr21 20012685 20012987 -14894583 + AluSq SINE Alu 1 302 -11 778 207 86 0 chr21 20013853 20014027 -14893543 + MIR SINE MIR 74 262 0 1071 149 0 10 chr21 20014034 20014532 -14893038 + (CCA)n Simple_repeat Simple_repeat 1 671 0 309 95 0 0 chr21 20014536 20014578 -14892992 + (CAA)n Simple_repeat Simple_repeat 1 42 0 1587 66 2 9 chr21 20014581 20015113 -14892457 + (CCA)n Simple_repeat Simple_repeat 1 528 0 1275 112 0 2 chr21 20015141 20015552 -14892018 + (CCA)n Simple_repeat Simple_repeat 1 409 0 2862 75 11 13 chr21 20015552 20015925 -14891645 - THE1C LTR MaLR 0 375 4 394 157 24 0 chr21 20015928 20016011 -14891559 + (CCA)n Simple_repeat Simple_repeat 1 85 0 215 327 28 28 chr21 20016389 20016496 -14891074 + L3 LINE CR1 931 1037 -540 1501 294 46 15 chr21 20016772 20017316 -14890254 + MER20B DNA MER1_type 1 561 -223 2272 97 0 3 chr21 20017417 20017725 -14889845 + AluSq SINE Alu 1 307 -6 2044 126 0 13 chr21 20017863 20018173 -14889397 - AluSx SINE Alu -6 306 1 23 0 0 0 chr21 20018179 20018202 -14889368 + AT_rich Low_complexity Low_complexity 1 23 0 1181 186 0 74 chr21 20018457 20018726 -14888844 + AluJo SINE Alu 1 249 -63 423 56 0 0 chr21 20018939 20018993 -14888577 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 2094 73 7 24 chr21 20018993 20019281 -14888289 - AluY SINE Alu -28 283 1 2096 116 0 0 chr21 20019289 20019582 -14887988 - AluSx SINE Alu -17 295 3 1736 183 37 11 chr21 20019895 20020272 -14887298 - MLT1B LTR MaLR 0 390 4 3652 132 10 0 chr21 20020377 20020899 -14886671 - MER1A DNA MER1_type 0 527 1 208 353 55 64 chr21 20021142 20021360 -14886210 - L2 LINE L2 -3 3269 3054 238 305 43 57 chr21 20021326 20021467 -14886103 - MIR3 SINE MIR -68 140 2 1872 157 0 0 chr21 20021553 20021846 -14885724 - AluSx SINE Alu -18 294 2 258 315 0 0 chr21 20022298 20022390 -14885180 + (TG)n Simple_repeat Simple_repeat 1 92 0 206 81 27 0 chr21 20022417 20022454 -14885116 + (TG)n Simple_repeat Simple_repeat 1 38 0 1737 158 183 30 chr21 20022491 20022929 -14884641 - MLT1D LTR MaLR 0 505 1 336 260 71 46 chr21 20023130 20023300 -14884270 - MIR3 SINE MIR -11 197 20 771 314 88 42 chr21 20023655 20024282 -14883288 - MERVL LTR ERVL -1248 4237 3582 2371 102 7 0 chr21 20024539 20024842 -14882728 - AluSx SINE Alu -7 305 1 24 0 0 0 chr21 20025205 20025229 -14882341 + AT_rich Low_complexity Low_complexity 1 24 0 2110 126 13 3 chr21 20025556 20025865 -14881705 - AluSx SINE Alu 0 312 1 370 185 0 0 chr21 20026151 20026216 -14881354 - MIR SINE MIR -38 224 160 2215 64 7 11 chr21 20026411 20026727 -14880843 + AluSc SINE Alu 1 315 0 353 282 57 16 chr21 20027281 20027405 -14880165 - L2 LINE L2 -5 3308 3180 1504 186 46 29 chr21 20027849 20028156 -14879414 - AluJo SINE Alu 0 312 1 2130 120 33 0 chr21 20028465 20028765 -14878805 + AluSg SINE Alu 1 310 0 405 0 0 0 chr21 20029737 20029782 -14877788 + (CA)n Simple_repeat Simple_repeat 2 46 0 417 208 13 7 chr21 20030114 20030268 -14877302 + (TG)n Simple_repeat Simple_repeat 1 155 0 4173 183 36 36 chr21 20030890 20031289 -14876281 - MER21B LTR ERV1 -3 860 462 2244 112 3 3 chr21 20031289 20031601 -14875969 + AluSx SINE Alu 1 312 0 4173 183 36 36 chr21 20031601 20032058 -14875512 - MER21B LTR ERV1 -400 463 4 398 56 0 0 chr21 20032478 20032532 -14875038 - L1PA3 LINE L1 -3 6152 6099 2205 122 0 0 chr21 20032902 20033206 -14874364 + AluSx SINE Alu 3 306 -6 943 228 0 5 chr21 20033251 20033448 -14874122 + MER3 DNA MER1_type 1 196 -13 2155 139 3 0 chr21 20034402 20034857 -14872713 - AluSg SINE Alu 0 456 1 2259 108 3 10 chr21 20034866 20035172 -14872398 - AluSx SINE Alu -4 308 5 1675 173 77 23 chr21 20035196 20035548 -14872022 - MLT1A2 LTR MaLR 0 374 4 262 103 0 0 chr21 20035557 20035596 -14871974 - L2 LINE L2 -8 3305 3267 208 304 44 44 chr21 20035641 20035776 -14871794 - L2 LINE L2 -144 3128 2994 947 165 32 78 chr21 20036076 20036119 -14871451 - MLT1B LTR MaLR 0 390 347 2249 88 0 11 chr21 20036119 20036447 -14871123 + AluY SINE Alu 1 325 0 947 165 32 78 chr21 20036447 20036619 -14870951 - MLT1B LTR MaLR -43 347 183 407 77 0 0 chr21 20036620 20036672 -14870898 - MLT1B LTR MaLR -331 59 8 1510 169 158 42 chr21 20038850 20039205 -14868365 + MSTD LTR MaLR 1 396 0 414 289 15 15 chr21 20039286 20039421 -14868149 - L2 LINE L2 -2 3311 3177 1143 189 47 8 chr21 20039668 20039922 -14867648 + L1MB7 LINE L1 5909 6172 -12 2249 93 33 0 chr21 20040898 20041198 -14866372 - AluSx SINE Alu -2 310 1 2338 94 0 0 chr21 20041697 20041985 -14865585 - AluSc SINE Alu -21 288 1 268 288 14 72 chr21 20042093 20042232 -14865338 - MIR SINE MIR -106 156 26 444 322 26 30 chr21 20042657 20042887 -14864683 + MLT1L LTR MaLR 215 443 -172 2152 112 0 22 chr21 20043103 20043414 -14864156 - AluSx SINE Alu -8 304 1 528 242 138 56 chr21 20043945 20044213 -14863357 + MLT1L LTR MaLR 1 290 -325 239 0 32 0 chr21 20044282 20044313 -14863257 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 43730 52 2 1 chr21 20044313 20050424 -14857146 - L1PA5 LINE L1 -24 6130 11 3541 182 83 12 chr21 20050581 20051307 -14856263 + L1MC3 LINE L1 7008 7784 -1 773 254 79 16 chr21 20051357 20051530 -14856040 + L1ME1 LINE L1 3310 3512 -2634 2427 67 7 20 chr21 20051530 20051830 -14855740 + AluY SINE Alu 2 297 -14 773 254 79 16 chr21 20051830 20051959 -14855611 + L1ME1 LINE L1 3512 3631 -2515 3082 128 14 12 chr21 20051967 20052475 -14855095 + L1MA4 LINE L1 5788 6296 -4 3408 151 68 17 chr21 20052475 20053127 -14854443 + L1MA7 LINE L1 5601 6291 0 4392 206 39 32 chr21 20053136 20054163 -14853407 + L1ME1 LINE L1 4264 5319 -847 2094 105 20 17 chr21 20054163 20054459 -14853111 - AluSx SINE Alu -4 308 12 4392 206 39 32 chr21 20054459 20055287 -14852283 + L1ME1 LINE L1 5319 6140 -26 326 308 55 25 chr21 20055309 20055546 -14852024 + L1ME4a LINE L1 5655 5898 -223 249 363 9 9 chr21 20055931 20056044 -14851526 + MLT1I LTR MaLR 98 210 -199 2235 119 0 7 chr21 20056098 20056408 -14851162 + AluSx SINE Alu 1 308 -4 4134 175 40 52 chr21 20056409 20057167 -14850403 - MER49 LTR ERV1 -12 911 164 1809 160 3 11 chr21 20057167 20057454 -14850116 + AluJo SINE Alu 1 285 -27 4134 175 40 52 chr21 20057454 20057617 -14849953 - MER49 LTR ERV1 -759 164 1 2397 119 11 24 chr21 20058391 20058760 -14848810 + THE1B LTR MaLR 1 364 0 1607 132 4 0 chr21 20059696 20059923 -14847647 + AluSg/x SINE Alu 66 293 -17 418 162 96 114 chr21 20059968 20060106 -14847464 - MER112 DNA MER1_type -1 259 123 2659 133 3 3 chr21 20060106 20060496 -14847074 + MLT1B LTR MaLR 1 390 0 418 162 96 114 chr21 20060496 20060524 -14847046 - MER112 DNA MER1_type -137 123 96 213 154 0 0 chr21 20060536 20060575 -14846995 + (CA)n Simple_repeat Simple_repeat 2 40 0 198 0 0 0 chr21 20060835 20060857 -14846713 + (A)n Simple_repeat Simple_repeat 1 22 0 2120 125 0 0 chr21 20061312 20061600 -14845970 + AluSq SINE Alu 3 290 -23 2174 153 104 14 chr21 20062404 20062828 -14844742 + MER31B LTR ERV1 1 462 -4 534 263 78 22 chr21 20063346 20063525 -14844045 - MER5A DNA MER1_type 0 189 1 219 69 0 0 chr21 20063711 20063740 -14843830 + (TTC)n Simple_repeat Simple_repeat 3 31 0 846 199 13 6 chr21 20063742 20063898 -14843672 - FRAM SINE Alu -19 157 1 1937 157 16 3 chr21 20064404 20064723 -14842847 + Tigger2 DNA MER2_type 2394 2716 -2 1864 106 10 36 chr21 20064902 20065203 -14842367 + L1PA15 LINE L1 5867 6159 -6 225 0 0 0 chr21 20065213 20065238 -14842332 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 1826 154 54 23 chr21 20065648 20065998 -14841572 + THE1C LTR MaLR 15 375 0 696 137 137 26 chr21 20066092 20066245 -14841325 - L1MB4 LINE L1 -2 6178 6009 3866 188 10 9 chr21 20066254 20067591 -14839979 - L1MB4 LINE L1 -281 5899 4564 412 118 0 65 chr21 20068035 20068128 -14839442 + (TA)n Simple_repeat Simple_repeat 1 87 0 507 311 126 28 chr21 20068239 20068525 -14839045 - MLT1L LTR MaLR -182 433 120 342 268 65 22 chr21 20069519 20069657 -14837913 + MIR3 SINE MIR 27 170 -38 213 179 89 18 chr21 20069802 20069858 -14837712 + MIR SINE MIR 200 259 -3 216 0 0 0 chr21 20071250 20071274 -14836296 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1898 91 8 0 chr21 20071287 20071528 -14836042 - AluSc SINE Alu -10 299 57 1946 136 11 0 chr21 20071672 20071951 -14835619 + AluSx SINE Alu 16 297 -15 773 274 55 4 chr21 20072176 20072431 -14835139 + LTR33 LTR ERVL 12 279 -242 24 0 0 0 chr21 20072600 20072624 -14834946 + AT_rich Low_complexity Low_complexity 1 24 0 2057 123 3 0 chr21 20072631 20072923 -14834647 + AluSx SINE Alu 1 293 -19 32 67 0 0 chr21 20072948 20073008 -14834562 + AT_rich Low_complexity Low_complexity 1 60 0 1754 190 59 44 chr21 20073025 20073547 -14834023 - L1M4 LINE L1 -3200 3444 2915 404 192 0 0 chr21 20073535 20073613 -14833957 - L1M4 LINE L1 -6399 143 66 894 115 27 15 chr21 20073635 20073894 -14833676 + CT-rich Low_complexity Low_complexity 4 263 0 1582 209 41 18 chr21 20075227 20075566 -14832004 + MLT1A1 LTR MaLR 11 357 -8 786 298 52 58 chr21 20075570 20075933 -14831637 - L1MEd LINE L1 -5745 374 14 1530 206 0 0 chr21 20076114 20076415 -14831155 + AluJo SINE Alu 1 301 -11 243 267 109 69 chr21 20076883 20076984 -14830586 - L2 LINE L2 -1 3312 3208 1082 297 45 13 chr21 20077213 20077587 -14829983 - MLT1I LTR MaLR -8 401 16 580 220 110 33 chr21 20078318 20078500 -14829070 - MLT1K LTR MaLR -24 564 369 1770 124 3 62 chr21 20079163 20079470 -14828100 - AluSg SINE Alu -21 289 1 522 237 16 116 chr21 20079611 20079691 -14827879 - MER45A DNA AcHobo -1403 178 126 1800 172 27 0 chr21 20079691 20079988 -14827582 + AluJb SINE Alu 1 305 -7 522 237 16 116 chr21 20079988 20080097 -14827473 - MER45A DNA AcHobo -1455 126 8 334 264 40 32 chr21 20080319 20080444 -14827126 - L1 LINE L1 -1134 5012 4887 2185 103 0 7 chr21 20080630 20080931 -14826639 + AluSx SINE Alu 1 299 -13 301 225 60 77 chr21 20081042 20081224 -14826346 + LTR33 LTR ERVL 106 284 -237 1467 169 113 51 chr21 20081483 20081855 -14825715 - MSTD LTR MaLR -1 395 1 571 272 43 78 chr21 20081918 20082003 -14825567 + L2 LINE L2 2150 2236 -1078 2133 109 0 0 chr21 20082003 20082296 -14825274 + AluSc SINE Alu 1 293 -16 571 272 43 78 chr21 20082296 20082556 -14825014 + L2 LINE L2 2236 2483 -831 900 141 108 121 chr21 20082556 20082688 -14824882 + MLT1A1 LTR MaLR 1 130 -235 2518 94 32 27 chr21 20082688 20083061 -14824509 + THE1C LTR MaLR 1 375 0 900 141 108 121 chr21 20083061 20083177 -14824393 + MLT1A1 LTR MaLR 130 246 -119 219 186 0 0 chr21 20083177 20083220 -14824350 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 293 232 5 106 chr21 20083225 20083327 -14824243 + (TA)n Simple_repeat Simple_repeat 1 75 -103 279 0 0 0 chr21 20083327 20083358 -14824212 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 293 232 5 106 chr21 20083358 20083453 -14824117 + (TA)n Simple_repeat Simple_repeat 75 178 0 334 208 22 38 chr21 20083519 20083702 -14823868 + (TA)n Simple_repeat Simple_repeat 1 180 0 312 258 21 21 chr21 20083705 20083798 -14823772 + L1MCa LINE L1 1976 2068 -4358 333 158 0 0 chr21 20083803 20083860 -14823710 + MLT2B1 LTR ERVL 464 520 0 1500 271 58 30 chr21 20084093 20084658 -14822912 - MLT1G LTR MaLR 0 590 10 263 299 15 0 chr21 20084667 20084734 -14822836 + L2 LINE L2 3204 3271 -1 1697 176 7 3 chr21 20085202 20085504 -14822066 - AluJo SINE Alu -9 303 1 350 241 0 25 chr21 20085512 20085591 -14821979 - L1ME LINE L1 -463 5658 5582 210 71 0 0 chr21 20086253 20086281 -14821289 + (CTATA)n Simple_repeat Simple_repeat 3 30 0 1854 135 0 14 chr21 20086397 20086711 -14820859 - AluJb SINE Alu 0 310 1 207 0 0 0 chr21 20086786 20086809 -14820761 + (TC)n Simple_repeat Simple_repeat 2 24 0 329 188 26 26 chr21 20086809 20086926 -14820644 + (TA)n Simple_repeat Simple_repeat 1 117 0 204 158 0 0 chr21 20086963 20087001 -14820569 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 2213 80 0 13 chr21 20087446 20087747 -14819823 - AluY SINE Alu -14 297 1 2074 99 3 3 chr21 20087876 20088192 -14819378 - AluSx SINE Alu 0 316 1 1159 125 0 0 chr21 20088986 20089154 -14818416 - AluSg/x SINE Alu -11 299 132 2193 105 20 0 chr21 20089154 20089460 -14818110 - AluSx SINE Alu 0 312 1 29 0 0 0 chr21 20089521 20089550 -14818020 + AT_rich Low_complexity Low_complexity 1 29 0 4050 97 0 5 chr21 20089550 20090108 -14817462 - L1PB1 LINE L1 -1 6150 5596 566 62 25 0 chr21 20090368 20090448 -14817122 - MSTB1 LTR MaLR 0 432 351 1818 143 55 15 chr21 20090590 20090918 -14816652 - MSTB1 LTR MaLR -91 341 1 1849 314 51 10 chr21 20091049 20092047 -14815523 + HERV16 LTR ERVL 814 1938 -3058 2230 194 48 48 chr21 20092047 20092412 -14815158 + MLT1F LTR MaLR 3 370 -172 1837 101 9 60 chr21 20092412 20092728 -14814842 - AluSc SINE Alu -9 300 1 2230 194 48 48 chr21 20092728 20092902 -14814668 + MLT1F LTR MaLR 369 542 0 1849 314 51 10 chr21 20092902 20093140 -14814430 + HERV16 LTR ERVL 1938 2165 -2831 2007 305 64 43 chr21 20093200 20093407 -14814163 + HERV16 LTR ERVL 2263 2464 -3244 2270 88 0 0 chr21 20093407 20093701 -14813869 - AluSg1 SINE Alu -15 294 1 2007 305 64 43 chr21 20093701 20094950 -14812620 + HERV16 LTR ERVL 2464 3793 -1915 291 161 25 25 chr21 20095017 20095098 -14812472 + CT-rich Low_complexity Low_complexity 2 82 0 189 151 62 34 chr21 20095167 20095313 -14812257 + (TCTA)n Simple_repeat Simple_repeat 4 153 0 1685 140 0 34 chr21 20095348 20095640 -14811930 + AluJb SINE Alu 5 286 -26 505 0 31 0 chr21 20095640 20095705 -14811865 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 886 240 113 87 chr21 20096795 20097346 -14810224 - L2 LINE L2 -11 3302 2746 324 0 0 0 chr21 20097885 20097921 -14809649 + (GA)n Simple_repeat Simple_repeat 1 36 0 1044 259 30 44 chr21 20098093 20098390 -14809180 + MLT1A2 LTR MaLR 1 293 -81 280 128 0 0 chr21 20098373 20098412 -14809158 + MLT2B3 LTR ERVL 455 493 -61 452 220 73 0 chr21 20098467 20098576 -14808994 + MLT1A2 LTR MaLR 274 390 0 2049 77 4 4 chr21 20098743 20099016 -14808554 - AluSx SINE Alu -15 297 25 270 260 14 0 chr21 20099104 20099177 -14808393 - L2 LINE L2 -798 2516 2443 381 22 0 0 chr21 20099216 20099262 -14808308 + (TG)n Simple_repeat Simple_repeat 2 47 0 312 226 88 10 chr21 20099281 20099383 -14808187 - L2 LINE L2 -980 2334 2225 381 277 139 7 chr21 20099479 20099616 -14807954 - MIR SINE MIR -6 256 102 375 354 76 51 chr21 20100408 20100722 -14806848 - L2 LINE L2 0 3272 2951 2387 70 0 0 chr21 20101401 20101699 -14805871 - AluSg1 SINE Alu -11 298 1 21 57 0 0 chr21 20103377 20103412 -14804158 + GC_rich Low_complexity Low_complexity 1 35 0 234 204 9 65 chr21 20103721 20103829 -14803741 + (CGG)n Simple_repeat Simple_repeat 2 103 0 207 0 0 0 chr21 20105623 20105646 -14801924 + (ATTCG)n Simple_repeat Simple_repeat 1 23 0 836 149 0 8 chr21 20106876 20107010 -14800560 - FLAM_C SINE Alu -10 133 1 419 211 64 28 chr21 20107930 20108039 -14799531 - MER57A LTR ERV1 -78 325 213 2188 116 0 0 chr21 20108039 20108341 -14799229 + AluSx SINE Alu 1 302 -10 1505 119 0 0 chr21 20108515 20108725 -14798845 + AluSx SINE Alu 1 210 -102 1685 221 38 31 chr21 20110356 20110809 -14796761 - MLT1C LTR MaLR -2 465 10 966 260 72 9 chr21 20110837 20111168 -14796402 - LTR16A LTR ERVL -9 441 90 664 134 80 107 chr21 20111338 20111407 -14796163 - L1MA4A LINE L1 -117 6186 6117 1994 83 22 11 chr21 20111407 20111684 -14795886 + AluSq SINE Alu 1 280 -33 279 79 0 0 chr21 20111684 20111722 -14795848 + (CAA)n Simple_repeat Simple_repeat 2 39 0 664 134 80 107 chr21 20111722 20111838 -14795732 - L1MA4A LINE L1 -184 6119 6005 1517 140 70 3 chr21 20112593 20112879 -14794691 - L1MA4A LINE L1 0 6303 5999 1135 245 52 98 chr21 20112899 20113585 -14793985 - L1MC4a LINE L1 -1900 5908 5254 1538 128 29 161 chr21 20114192 20114373 -14793197 + MLT1A1 LTR MaLR 1 204 -161 2176 112 3 0 chr21 20114373 20114677 -14792893 + AluSq SINE Alu 1 305 -8 1538 128 29 161 chr21 20114677 20114837 -14792733 + MLT1A1 LTR MaLR 204 278 -87 2017 112 10 7 chr21 20114837 20115140 -14792430 - AluSx SINE Alu -8 304 1 1538 128 29 161 chr21 20115140 20115218 -14792352 + MLT1A1 LTR MaLR 278 365 0 1384 172 129 82 chr21 20115544 20115793 -14791777 - MLT1C LTR MaLR -5 462 226 1909 134 7 23 chr21 20115793 20116100 -14791470 - AluSg SINE Alu -8 302 1 1384 172 129 82 chr21 20116100 20116202 -14791368 - MLT1C LTR MaLR -241 226 130 1896 137 7 13 chr21 20116202 20116501 -14791069 + AluSx SINE Alu 1 297 -15 1384 172 129 82 chr21 20116501 20116589 -14790981 - MLT1C LTR MaLR -337 130 1 276 182 91 39 chr21 20116590 20116667 -14790903 + L2 LINE L2 3140 3220 -93 1891 74 96 0 chr21 20116728 20116998 -14790572 - AluSq SINE Alu -17 296 1 371 331 31 0 chr21 20118023 20118153 -14789417 - MIR SINE MIR -3 259 126 2196 95 6 13 chr21 20118518 20118833 -14788737 + AluSp SINE Alu 1 313 0 203 217 17 0 chr21 20118870 20118930 -14788640 + (TA)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr21 20118932 20118954 -14788616 + AT_rich Low_complexity Low_complexity 1 22 0 32 26 0 0 chr21 20120039 20120078 -14787492 + AT_rich Low_complexity Low_complexity 1 39 0 2147 102 0 3 chr21 20120297 20120592 -14786978 - AluSx SINE Alu -18 294 1 236 305 11 0 chr21 20120615 20120710 -14786860 - L1P2 LINE L1 -335 5820 5725 354 211 111 0 chr21 20120772 20120862 -14786708 - L1ME LINE L1 -509 5612 5513 1115 103 208 156 chr21 20121037 20121157 -14786413 - MER57A LTR ERV1 -4 399 287 2162 117 0 0 chr21 20121157 20121465 -14786105 + AluSx SINE Alu 1 308 -4 1115 103 208 156 chr21 20121465 20121723 -14785847 - MER57A LTR ERV1 -116 287 1 434 304 63 19 chr21 20122048 20122206 -14785364 + MIR SINE MIR 21 185 -77 34 0 0 0 chr21 20122209 20122243 -14785327 + AT_rich Low_complexity Low_complexity 1 34 0 270 0 0 0 chr21 20122243 20122273 -14785297 + (GA)n Simple_repeat Simple_repeat 2 31 0 198 0 0 0 chr21 20122272 20122294 -14785276 + (TG)n Simple_repeat Simple_repeat 2 23 0 2064 120 0 13 chr21 20122346 20122662 -14784908 + AluSx SINE Alu 1 312 0 434 247 71 47 chr21 20123072 20123242 -14784328 - LTR48 LTR ERV1 0 787 614 386 220 46 28 chr21 20123276 20123385 -14784185 - LTR48 LTR ERV1 -298 489 379 265 343 10 10 chr21 20124842 20124944 -14782626 - MER91A DNA MER1_type -74 122 21 2207 163 5 28 chr21 20125911 20126310 -14781260 + MLT1B LTR MaLR 1 390 0 1635 143 117 90 chr21 20126971 20127025 -14780545 - MLT1C LTR MaLR 0 467 416 1818 138 7 7 chr21 20127025 20127329 -14780241 + AluJb SINE Alu 1 304 -8 1635 143 117 90 chr21 20127329 20127729 -14779841 - MLT1C LTR MaLR -51 416 1 2237 85 0 3 chr21 20128335 20128628 -14778942 - AluSq SINE Alu -21 292 1 2356 175 40 13 chr21 20129239 20129690 -14777880 - MLT1C LTR MaLR -2 465 3 1956 131 10 0 chr21 20129845 20130136 -14777434 - AluSq SINE Alu -19 294 1 297 0 0 0 chr21 20130508 20130541 -14777029 + (CA)n Simple_repeat Simple_repeat 2 34 0 1255 179 49 91 chr21 20130890 20131297 -14776273 - MLT1B LTR MaLR 0 390 1 374 253 87 27 chr21 20132139 20132289 -14775281 - MIR SINE MIR -12 250 92 2280 78 3 0 chr21 20132290 20132584 -14774986 + AluSp SINE Alu 1 295 -18 1631 140 48 154 chr21 20134763 20134871 -14772699 + MLT1B LTR MaLR 1 119 -271 1838 121 50 0 chr21 20134871 20135152 -14772418 + AluSx SINE Alu 1 295 -17 1631 140 48 154 chr21 20135152 20135479 -14772091 + MLT1B LTR MaLR 119 390 0 287 289 0 0 chr21 20136267 20136343 -14771227 - MIR SINE MIR -106 156 81 195 279 59 15 chr21 20136382 20136450 -14771120 - MIR SINE MIR -73 189 119 1864 140 18 0 chr21 20136506 20136791 -14770779 - AluJb SINE Alu -22 290 1 1325 179 37 55 chr21 20136892 20136954 -14770616 + MER33 DNA MER1_type 6 68 -2517 2140 109 7 0 chr21 20136954 20137257 -14770313 + AluSq SINE Alu 1 305 -8 1325 179 37 55 chr21 20137257 20137519 -14770051 + MER33 DNA MER1_type 68 324 0 2223 87 0 3 chr21 20137769 20138067 -14769503 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr21 20138106 20138128 -14769442 + AT_rich Low_complexity Low_complexity 1 22 0 1335 193 21 31 chr21 20140196 20140509 -14767061 - MLT1B LTR MaLR -4 386 77 818 202 6 60 chr21 20140509 20140552 -14767018 + MER2 DNA MER2_type 1 45 -299 1970 112 0 0 chr21 20140552 20140821 -14766749 - AluSx SINE Alu -14 298 30 818 202 6 60 chr21 20140821 20140960 -14766610 + MER2 DNA MER2_type 45 173 -171 225 86 0 57 chr21 20141116 20141151 -14766419 - MLT1B LTR MaLR -357 33 1 454 262 117 57 chr21 20141197 20141548 -14766022 - L2 LINE L2 0 3313 2942 208 217 33 0 chr21 20142544 20142604 -14764966 - L2 LINE L2 -226 3087 3026 1312 163 0 13 chr21 20142604 20142843 -14764727 - AluJb SINE Alu -13 299 64 2429 70 3 3 chr21 20144187 20144499 -14763071 + AluSp SINE Alu 1 312 -1 1791 132 55 66 chr21 20144600 20144964 -14762606 - MLT1B LTR MaLR -2 388 29 763 196 109 36 chr21 20145064 20145284 -14762286 - MER46A DNA MER2_type 0 236 1 208 263 18 0 chr21 20145296 20145353 -14762217 + L2 LINE L2 3214 3271 -1 250 172 0 52 chr21 20146043 20146101 -14761469 - MIR SINE MIR -1 261 207 2569 48 0 0 chr21 20146101 20146411 -14761159 - AluY SINE Alu -1 310 1 2077 129 3 0 chr21 20146726 20147037 -14760533 - AluSx SINE Alu 0 312 1 373 183 24 0 chr21 20147104 20147186 -14760384 - L1MEd LINE L1 -5965 154 71 1255 145 48 0 chr21 20147252 20147459 -14760111 - AluJo SINE Alu -10 302 86 573 15 0 0 chr21 20147753 20147819 -14759751 + (CA)n Simple_repeat Simple_repeat 2 67 0 1743 216 80 21 chr21 20148472 20148948 -14758622 - MLT1D LTR MaLR -1 504 1 1429 223 148 15 chr21 20149988 20150400 -14757170 - MLT1D LTR MaLR -2 503 37 2254 99 0 10 chr21 20150931 20151244 -14756326 + AluSx SINE Alu 1 310 -2 862 220 39 66 chr21 20151897 20152077 -14755493 - L1MA9 LINE L1 0 6312 6129 2266 103 0 0 chr21 20152077 20152378 -14755192 - AluSq SINE Alu -12 301 1 2171 113 0 0 chr21 20152387 20152688 -14754882 - AluSq SINE Alu -12 301 1 862 220 39 66 chr21 20152688 20152756 -14754814 - L1MA9 LINE L1 -191 6121 6061 1512 188 27 0 chr21 20153225 20153518 -14754052 + AluJo SINE Alu 2 302 0 688 163 0 14 chr21 20153531 20153672 -14753898 + GA-rich Low_complexity Low_complexity 2 140 0 252 274 0 0 chr21 20153753 20153815 -14753755 + CT-rich Low_complexity Low_complexity 3 64 0 201 39 0 0 chr21 20154328 20154354 -14753216 + (TG)n Simple_repeat Simple_repeat 1 26 0 1553 102 0 9 chr21 20154951 20155176 -14752394 - AluSq SINE Alu -6 307 85 1065 252 17 4 chr21 20155238 20155476 -14752094 + MIR SINE MIR 16 256 -6 198 154 19 77 chr21 20155587 20155639 -14751931 + L2 LINE L2 3265 3313 0 2110 89 14 0 chr21 20155986 20156278 -14751292 - AluSx SINE Alu -15 297 2 2328 164 18 11 chr21 20156393 20156843 -14750727 - L1MB7 LINE L1 -2 6169 5697 321 210 25 25 chr21 20156845 20156926 -14750644 - L1MB7 LINE L1 -511 5667 5587 30 69 0 0 chr21 20156926 20156984 -14750586 + AT_rich Low_complexity Low_complexity 1 58 0 438 55 55 0 chr21 20157013 20157086 -14750484 + CT-rich Low_complexity Low_complexity 3 79 0 2140 118 0 6 chr21 20157091 20157404 -14750166 - AluSx SINE Alu -1 311 1 2148 85 7 3 chr21 20157424 20157718 -14749852 + AluY SINE Alu 1 295 -16 228 35 0 0 chr21 20159100 20159129 -14748441 + (TG)n Simple_repeat Simple_repeat 2 30 0 504 353 40 0 chr21 20160174 20160375 -14747195 + MIR SINE MIR 9 217 -45 319 250 110 0 chr21 20160486 20160586 -14746984 + L2 LINE L2 2939 3049 -223 243 258 32 0 chr21 20160683 20160745 -14746825 + L2 LINE L2 3208 3271 -1 207 0 0 0 chr21 20161130 20161153 -14746417 + (A)n Simple_repeat Simple_repeat 1 23 0 329 376 6 12 chr21 20161972 20162261 -14745309 + (CA)n Simple_repeat Simple_repeat 1 287 0 1912 138 3 13 chr21 20162966 20163277 -14744293 - AluSx SINE Alu -4 308 1 1007 111 0 0 chr21 20163429 20163564 -14744006 + AluSq/x SINE Alu 1 135 -178 2293 91 0 0 chr21 20163564 20163862 -14743708 + AluSx SINE Alu 1 298 -14 2267 65 41 0 chr21 20164235 20164525 -14743045 + AluY SINE Alu 1 302 -9 3030 135 44 0 chr21 20164571 20165052 -14742518 - L1PA16 LINE L1 -9 6157 5656 2235 189 40 50 chr21 20165296 20165840 -14741730 - L1MC2 LINE L1 -1 6343 5805 1962 98 77 3 chr21 20165871 20166158 -14741412 - AluSx SINE Alu -4 308 1 804 171 112 0 chr21 20166158 20166328 -14741242 - L1MC2 LINE L1 -519 5825 5637 476 304 94 43 chr21 20168435 20168764 -14738806 + Charlie8 DNA MER1_type 62 407 -2010 309 100 0 0 chr21 20168794 20168844 -14738726 + (TG)n Simple_repeat Simple_repeat 2 51 0 331 259 170 9 chr21 20169016 20169128 -14738442 - L2 LINE L2 -4 3268 3139 299 234 9 90 chr21 20169235 20169346 -14738224 - MLT1D LTR MaLR -398 107 6 2296 91 3 0 chr21 20169461 20169769 -14737801 - AluSp SINE Alu -4 309 1 24 0 0 0 chr21 20169779 20169803 -14737767 + AT_rich Low_complexity Low_complexity 1 24 0 2287 100 0 0 chr21 20171358 20171668 -14735902 - AluSx SINE Alu -2 310 1 2094 82 14 3 chr21 20171994 20172276 -14735294 + AluSg SINE Alu 1 285 -25 1847 142 3 0 chr21 20174150 20174439 -14733131 - AluSx SINE Alu -21 291 2 258 274 0 36 chr21 20174648 20174732 -14732838 + G-rich Low_complexity Low_complexity 1 81 0 2080 109 3 0 chr21 20176682 20176975 -14730595 - AluSx SINE Alu -18 294 1 306 331 15 15 chr21 20177603 20177733 -14729837 + L2 LINE L2 3180 3309 -4 572 273 137 10 chr21 20178017 20178222 -14729348 - MIR SINE MIR -3 259 29 228 307 53 40 chr21 20178272 20178422 -14729148 + L2 LINE L2 2819 2970 -343 295 248 8 17 chr21 20178651 20178768 -14728802 + GA-rich Low_complexity Low_complexity 4 119 0 373 200 12 12 chr21 20179387 20179467 -14728103 - MER117 DNA MER1_type -106 91 12 246 220 0 0 chr21 20179501 20179551 -14728019 + L2 LINE L2 3264 3313 0 213 39 0 0 chr21 20179637 20179663 -14727907 + (CA)n Simple_repeat Simple_repeat 1 26 0 1650 121 24 0 chr21 20179707 20179956 -14727614 - MSTB1 LTR MaLR 0 432 178 563 275 63 5 chr21 20179956 20180145 -14727425 - MIR SINE MIR -61 201 2 364 182 80 44 chr21 20180448 20180585 -14726985 - L2 LINE L2 -211 3061 2920 198 71 0 0 chr21 20181242 20181270 -14726300 + (TA)n Simple_repeat Simple_repeat 1 28 0 1953 116 31 0 chr21 20183302 20183595 -14723975 - AluSp SINE Alu -11 302 1 395 314 26 7 chr21 20183677 20183830 -14723740 - MIR SINE MIR 0 262 107 600 176 106 100 chr21 20184725 20184830 -14722740 - MER5A DNA MER1_type -4 185 77 1939 138 0 22 chr21 20184830 20185148 -14722422 - AluJb SINE Alu -1 311 1 600 176 106 100 chr21 20185148 20185212 -14722358 - MER5A DNA MER1_type -112 77 15 2263 61 3 3 chr21 20185371 20185668 -14721902 + AluY SINE Alu 1 297 -14 1388 79 0 0 chr21 20188347 20188552 -14719018 - AluSq SINE Alu 0 313 109 578 86 123 0 chr21 20188649 20188730 -14718840 - AluS SINE Alu -221 92 2 476 311 63 39 chr21 20190218 20190424 -14717146 - L2 LINE L2 0 3313 3103 4187 181 89 11 chr21 20190467 20190558 -14717012 - L1MD2 LINE L1 0 6359 6277 2473 108 37 0 chr21 20190558 20190909 -14716661 - THE1B LTR MaLR 0 364 1 4187 181 89 11 chr21 20190909 20191678 -14715892 - L1MD2 LINE L1 -82 6277 5431 226 308 131 0 chr21 20191697 20191804 -14715766 - MARNA DNA Mariner -72 514 394 960 244 85 65 chr21 20191941 20192342 -14715228 - MLT1I LTR MaLR 0 409 1 1534 155 3 46 chr21 20193558 20193842 -14713728 - AluJo SINE Alu -11 301 30 2260 96 0 12 chr21 20195209 20195532 -14712038 + L1PA13 LINE L1 5843 6161 -2 2157 112 0 6 chr21 20195650 20195962 -14711608 - AluSx SINE Alu -1 311 2 3612 89 4 48 chr21 20195971 20196511 -14711059 - L1PB1 LINE L1 -1 6150 5635 1714 185 0 6 chr21 20197128 20197442 -14710128 + AluJb SINE Alu 1 312 0 405 91 0 0 chr21 20197642 20197697 -14709873 + Alu SINE Alu 2 56 -262 279 257 68 0 chr21 20198701 20198775 -14708795 + MER91A DNA MER1_type 116 194 -2 625 165 12 0 chr21 20198777 20198941 -14708629 + (TG)n Simple_repeat Simple_repeat 2 167 0 1955 118 7 0 chr21 20198942 20199238 -14708332 - AluSx SINE Alu -14 298 1 1704 168 23 3 chr21 20199619 20199922 -14707648 - AluJb SINE Alu -3 309 1 1991 90 25 11 chr21 20201121 20201436 -14706134 - AluSx SINE Alu 0 319 1 23 33 0 0 chr21 20201515 20201545 -14706025 + AT_rich Low_complexity Low_complexity 1 30 0 1187 210 7 15 chr21 20201892 20202164 -14705406 - AluJo SINE Alu -13 299 30 185 277 115 54 chr21 20202953 20203101 -14704469 + MIR3 SINE MIR 39 195 -13 23 33 0 0 chr21 20203192 20203222 -14704348 + AT_rich Low_complexity Low_complexity 1 30 0 2129 57 25 11 chr21 20203223 20203505 -14704065 - L1PA5 LINE L1 -1 6153 5868 357 82 0 0 chr21 20203623 20203672 -14703898 + (ATG)n Simple_repeat Simple_repeat 1 49 0 630 260 34 17 chr21 20203699 20203876 -14703694 + MIR SINE MIR 22 201 -61 236 275 100 8 chr21 20204382 20204502 -14703068 + L1MC4 LINE L1 7912 8042 0 195 42 0 0 chr21 20204512 20204536 -14703034 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 253 197 106 0 chr21 20205435 20205501 -14702069 + Charlie7 DNA MER1_type 366 438 -2174 1073 263 125 63 chr21 20205731 20206346 -14701224 + Charlie7 DNA MER1_type 773 1425 -1187 22 0 0 0 chr21 20206365 20206387 -14701183 + AT_rich Low_complexity Low_complexity 1 22 0 2185 117 0 0 chr21 20206521 20206828 -14700742 - AluSx SINE Alu -5 307 1 1920 163 0 0 chr21 20206831 20207132 -14700438 - AluSx SINE Alu -11 301 1 1333 173 11 32 chr21 20207777 20208060 -14699510 - AluJb SINE Alu -35 277 1 6752 134 26 38 chr21 20208254 20209167 -14698403 - L1MA8 LINE L1 -3 6288 5365 2265 67 0 51 chr21 20209167 20209479 -14698091 - AluSc SINE Alu -13 296 1 6752 134 26 38 chr21 20209479 20209578 -14697992 - L1MA8 LINE L1 -926 5365 5266 2266 80 33 0 chr21 20209578 20209877 -14697693 - AluY SINE Alu -2 309 1 6752 134 26 38 chr21 20209877 20210123 -14697447 - L1MA8 LINE L1 -1025 5266 5019 2111 129 0 0 chr21 20210123 20210432 -14697138 - AluSg SINE Alu -1 309 1 2115 74 0 68 chr21 20210436 20210759 -14696811 - AluSc SINE Alu -8 301 1 6752 134 26 38 chr21 20210759 20210771 -14696799 - L1MA8 LINE L1 -1275 5016 5005 2121 105 3 3 chr21 20210771 20211065 -14696505 - AluSp SINE Alu -17 296 3 6752 134 26 38 chr21 20211065 20211900 -14695670 - L1MA8 LINE L1 -1286 5005 4161 267 31 0 0 chr21 20211900 20211932 -14695638 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 6752 134 26 38 chr21 20211932 20211964 -14695606 - L1MA8 LINE L1 -2130 4161 4130 1150 80 0 0 chr21 20211964 20212115 -14695455 - L1PA11 LINE L1 -3 6171 6021 6752 134 26 38 chr21 20212115 20212218 -14695352 - L1MA8 LINE L1 -2161 4130 4072 219 114 0 0 chr21 20212812 20212847 -14694723 + (TG)n Simple_repeat Simple_repeat 1 35 0 2142 112 3 6 chr21 20212852 20213165 -14694405 - AluSx SINE Alu 0 312 1 328 343 7 7 chr21 20213284 20213427 -14694143 - MIR3 SINE MIR -63 145 3 885 199 23 0 chr21 20213853 20214024 -14693546 + MER5B DNA MER1_type 4 178 0 2206 148 8 18 chr21 20214059 20214452 -14693118 + L1MA5 LINE L1 5912 6300 0 2368 119 38 0 chr21 20214898 20215242 -14692328 - THE1B LTR MaLR -2 362 6 621 329 87 26 chr21 20216149 20217139 -14690431 + L2 LINE L2 2252 3313 0 453 178 92 2 chr21 20218512 20218684 -14688886 - MLT1B LTR MaLR 0 390 171 455 169 47 14 chr21 20218706 20218854 -14688716 + CT-rich Low_complexity Low_complexity 4 156 0 266 104 0 21 chr21 20218860 20218908 -14688662 + (TCCCC)n Simple_repeat Simple_repeat 3 49 0 1465 192 36 0 chr21 20218934 20219184 -14688386 - AluJb SINE Alu -53 259 1 875 169 17 6 chr21 20219186 20219358 -14688212 - MLT1B LTR MaLR -213 177 4 2381 100 3 0 chr21 20219495 20219796 -14687774 + AluSx SINE Alu 1 302 -10 2221 129 39 83 chr21 20220259 20220580 -14686990 - MLT2D LTR ERVL 0 414 80 378 0 0 0 chr21 20220580 20220622 -14686948 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 2099 123 0 0 chr21 20220622 20220898 -14686672 - AluSx SINE Alu -36 276 1 2221 129 39 83 chr21 20220898 20221008 -14686562 - MLT2D LTR ERVL -332 82 1 2108 137 0 3 chr21 20221288 20221581 -14685989 - AluSx SINE Alu -20 292 1 314 333 18 0 chr21 20222042 20222153 -14685417 - MIR SINE MIR -69 139 27 1936 162 3 19 chr21 20224935 20225244 -14682326 + AluJo SINE Alu 2 305 -7 1862 160 58 3 chr21 20227462 20227806 -14679764 + L1MB2 LINE L1 5808 6170 -1 2079 136 3 7 chr21 20227972 20228273 -14679297 - AluJb SINE Alu -4 308 9 2065 134 0 13 chr21 20231052 20231351 -14676219 + AluJb SINE Alu 1 295 -17 180 0 0 0 chr21 20231716 20231736 -14675834 + (TG)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr21 20231785 20231809 -14675761 + AT_rich Low_complexity Low_complexity 1 24 0 2064 140 7 13 chr21 20232151 20232451 -14675119 - AluJb SINE Alu -14 298 1 222 245 61 51 chr21 20234303 20234401 -14673169 - MIR3 SINE MIR -108 100 2 357 303 73 54 chr21 20234415 20234745 -14672825 - MLT1J2 LTR MaLR -15 419 68 2219 131 0 3 chr21 20234821 20235133 -14672437 - AluSx SINE Alu -1 311 1 1599 186 46 54 chr21 20235272 20235449 -14672121 + MLT1B LTR MaLR 1 178 -212 2481 80 0 6 chr21 20235449 20235761 -14671809 + AluSg SINE Alu 1 310 0 1599 186 46 54 chr21 20235761 20235975 -14671595 + MLT1B LTR MaLR 178 389 -1 2084 134 13 3 chr21 20236127 20236426 -14671144 - AluSx SINE Alu -10 302 1 689 197 13 90 chr21 20236508 20236741 -14670829 - MER58C DNA MER1_type 0 215 1 2107 145 3 7 chr21 20236819 20237129 -14670441 - AluJo SINE Alu -1 311 3 2135 108 49 0 chr21 20238000 20238286 -14669284 - AluSx SINE Alu -12 300 1 213 39 0 0 chr21 20238300 20238326 -14669244 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 654 187 21 0 chr21 20238876 20239162 -14668408 + (TGGA)n Simple_repeat Simple_repeat 1 292 0 2272 129 40 53 chr21 20239807 20240202 -14667368 + MLT1B LTR MaLR 1 390 0 1621 204 52 21 chr21 20240216 20240439 -14667131 - MER89 LTR ERV1 0 559 318 2568 150 57 5 chr21 20240439 20240846 -14666724 - MSTA LTR MaLR 0 428 1 1621 204 52 21 chr21 20240846 20241004 -14666566 - MER89 LTR ERV1 -241 318 166 1765 207 71 18 chr21 20241111 20241550 -14666020 - MLT1C LTR MaLR 0 467 6 2236 157 57 5 chr21 20242415 20242822 -14664748 + MSTC LTR MaLR 1 428 0 195 42 0 0 chr21 20243058 20243082 -14664488 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2614 203 7 44 chr21 20243208 20243805 -14663765 - L1MD3 LINE L1 -5 7990 7416 307 273 20 40 chr21 20243805 20243904 -14663666 - MLT1F1 LTR MaLR -435 132 36 2125 121 3 9 chr21 20243905 20244251 -14663319 - L1MD3 LINE L1 -879 7116 6773 400 212 103 27 chr21 20244251 20244397 -14663173 - MARNA DNA Mariner -197 389 233 2922 105 2 25 chr21 20244399 20244876 -14662694 + L1PB2 LINE L1 5684 6149 -2 2353 82 0 3 chr21 20245007 20245300 -14662270 + AluY SINE Alu 1 292 -19 1455 207 48 14 chr21 20246576 20246728 -14660842 + MLT1B LTR MaLR 21 166 -224 192 40 0 0 chr21 20246728 20246753 -14660817 + (GA)n Simple_repeat Simple_repeat 2 26 0 1455 207 48 14 chr21 20246753 20246958 -14660612 + MLT1B LTR MaLR 166 390 0 223 222 0 0 chr21 20247199 20247244 -14660326 + L2 LINE L2 2315 2359 -955 207 0 0 0 chr21 20247261 20247284 -14660286 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2519 64 3 0 chr21 20247286 20247581 -14659989 - AluSp SINE Alu -17 296 1 536 186 83 72 chr21 20248129 20248175 -14659395 - MLT1B LTR MaLR -195 195 151 2402 92 7 0 chr21 20248175 20248480 -14659090 + AluSp SINE Alu 1 307 -6 536 186 83 72 chr21 20248480 20248549 -14659021 - MLT1B LTR MaLR -239 151 84 1453 197 104 20 chr21 20248549 20248894 -14658676 - MLT1A2 LTR MaLR 0 374 1 536 186 83 72 chr21 20248894 20248970 -14658600 - MLT1B LTR MaLR -306 84 1 480 184 28 0 chr21 20249628 20249737 -14657833 - L1MD3 LINE L1 -2 7993 7882 1230 155 23 39 chr21 20249749 20249839 -14657731 - L1MB3 LINE L1 0 6183 6093 2320 100 0 0 chr21 20249839 20250120 -14657450 + AluSx SINE Alu 1 284 -28 630 0 0 0 chr21 20250120 20250190 -14657380 + (CAATA)n Simple_repeat Simple_repeat 1 70 0 2320 100 0 0 chr21 20250190 20250208 -14657362 + AluSx SINE Alu 283 300 -12 1230 155 23 39 chr21 20250208 20250375 -14657195 - L1MB3 LINE L1 -90 6093 5930 479 208 9 9 chr21 20250886 20250992 -14656578 - MLT1C LTR MaLR -6 461 356 358 238 12 0 chr21 20251000 20251080 -14656490 + MIR SINE MIR 79 159 -103 327 152 17 0 chr21 20251378 20251437 -14656133 - MER81 DNA DNA -1 113 54 2410 94 0 3 chr21 20253137 20253444 -14654126 - AluSq SINE Alu -6 307 2 250 132 0 0 chr21 20253754 20253792 -14653778 - U2 snRNA snRNA -150 38 1 1221 106 7 0 chr21 20254416 20254717 -14652853 + (TA)n Simple_repeat Simple_repeat 1 303 0 3023 84 15 0 chr21 20254720 20255126 -14652444 - MLT2A2 LTR ERVL -41 412 1 3824 168 55 28 chr21 20255341 20256055 -14651515 + MER44D DNA MER2_type 1 605 0 1833 213 83 27 chr21 20256802 20257319 -14650251 + MER77 LTR ERV1 40 585 -20 760 210 62 0 chr21 20258037 20258083 -14649487 + MER5B DNA MER1_type 1 43 -135 200 35 35 0 chr21 20258083 20258112 -14649458 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 760 210 62 0 chr21 20258112 20258227 -14649343 + MER5B DNA MER1_type 43 172 -6 367 274 62 56 chr21 20258660 20258839 -14648731 + MER5A DNA MER1_type 7 186 -3 2545 161 11 16 chr21 20259095 20259530 -14648040 + Tigger2a DNA MER2_type 1 433 -1 211 115 39 39 chr21 20259565 20259617 -14647953 + CT-rich Low_complexity Low_complexity 2 53 0 285 29 0 0 chr21 20259618 20259652 -14647918 + (CA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr21 20259826 20259847 -14647723 + AT_rich Low_complexity Low_complexity 1 21 0 371 345 0 0 chr21 20260197 20260374 -14647196 + (CATTC)n Simple_repeat Simple_repeat 4 180 0 450 362 0 0 chr21 20260437 20260791 -14646779 + (CACTC)n Simple_repeat Simple_repeat 1 354 0 2478 161 29 5 chr21 20260939 20261355 -14646215 + MSTB LTR MaLR 1 426 0 1138 162 13 53 chr21 20263857 20264085 -14643485 - MER20 DNA MER1_type 0 219 1 2484 68 0 0 chr21 20264311 20264607 -14642963 - AluY SINE Alu -15 296 1 573 206 28 7 chr21 20264637 20264778 -14642792 - MLT1L LTR MaLR -347 268 125 434 314 128 0 chr21 20265392 20265564 -14642006 - MIR SINE MIR -6 256 63 2285 163 49 5 chr21 20265592 20265979 -14641591 + LTR57 LTR ERVL 1 404 -7 289 375 88 18 chr21 20266306 20266589 -14640981 + L2 LINE L2 2930 3232 -40 1305 239 40 3 chr21 20267923 20268290 -14639280 + LTR43 LTR ERV1 176 461 -51 9088 91 23 2 chr21 20268718 20270798 -14636772 - L1PA8 LINE L1 0 6172 4060 11044 104 11 0 chr21 20270798 20272417 -14635153 + L1PA8 LINE L1 2411 4046 -2100 375 299 19 0 chr21 20272476 20272583 -14634987 + L2 LINE L2 3203 3311 -2 432 327 6 0 chr21 20273135 20273303 -14634267 + (TG)n Simple_repeat Simple_repeat 1 169 0 461 368 6 0 chr21 20273360 20273534 -14634036 + (TG)n Simple_repeat Simple_repeat 1 175 0 428 356 0 5 chr21 20273564 20274011 -14633559 + (TG)n Simple_repeat Simple_repeat 1 444 0 213 328 0 0 chr21 20274025 20274089 -14633481 + (TG)n Simple_repeat Simple_repeat 1 64 0 207 0 0 0 chr21 20274936 20274959 -14632611 + (A)n Simple_repeat Simple_repeat 1 23 0 1356 177 50 22 chr21 20275126 20275545 -14632025 + L1MCa LINE L1 1420 1941 -4485 2232 77 7 3 chr21 20276627 20276924 -14630646 - AluSp SINE Alu -15 298 1 1616 182 7 0 chr21 20277025 20277327 -14630243 - AluSx SINE Alu 0 305 2 2313 61 0 7 chr21 20277476 20277769 -14629801 - AluY SINE Alu -19 292 2 1117 45 0 0 chr21 20278017 20278150 -14629420 + L1PA8 LINE L1 6038 6170 -2 312 48 0 0 chr21 20278178 20278220 -14629350 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 36 0 0 chr21 20278296 20278324 -14629246 + AT_rich Low_complexity Low_complexity 1 28 0 318 301 32 49 chr21 20278867 20278990 -14628580 - L2 LINE L2 -8 3305 3185 806 246 24 19 chr21 20279473 20279680 -14627890 + MIR SINE MIR 50 257 -5 1914 136 3 7 chr21 20279734 20280029 -14627541 + AluSx SINE Alu 1 294 -18 2217 201 42 36 chr21 20280779 20281276 -14626294 + MER21B LTR ERV1 345 844 -19 1974 158 13 45 chr21 20281473 20281527 -14626043 - MLT1A1 LTR MaLR -3 362 308 2162 112 57 33 chr21 20281527 20281893 -14625677 + THE1C LTR MaLR 1 375 0 1974 158 13 45 chr21 20281893 20282212 -14625358 - MLT1A1 LTR MaLR -57 308 1 457 246 90 36 chr21 20282213 20282288 -14625282 - L1ME3A LINE L1 -48 6122 6048 586 242 62 14 chr21 20282288 20282613 -14624957 - L1ME2 LINE L1 -277 6023 5663 1051 223 39 21 chr21 20282615 20282947 -14624623 - L1ME2 LINE L1 -558 5604 5267 582 132 0 0 chr21 20282993 20283076 -14624494 - FLAM SINE Alu -18 125 43 1635 267 52 55 chr21 20283077 20283406 -14624164 - L1ME2 LINE L1 -946 5200 4871 2024 100 35 0 chr21 20283406 20283695 -14623875 - AluSq SINE Alu -14 299 1 1635 267 52 55 chr21 20283695 20284294 -14623276 - L1ME2 LINE L1 -1275 4871 4275 1442 203 58 64 chr21 20284314 20284781 -14622789 - MLT1C LTR MaLR 0 467 4 744 53 0 0 chr21 20284891 20284985 -14622585 + AluY SINE Alu 203 296 -15 2176 102 3 3 chr21 20286590 20286894 -14620676 + AluSg SINE Alu 1 304 -6 188 270 60 65 chr21 20286894 20287068 -14620502 - L2 LINE L2 -271 3001 2827 900 210 62 0 chr21 20287098 20287274 -14620296 + MER20 DNA MER1_type 27 213 -6 2262 141 28 0 chr21 20287280 20287634 -14619936 - THE1B LTR MaLR 0 364 1 1772 197 30 0 chr21 20287801 20288131 -14619439 + MER58B DNA MER1_type 2 341 0 1792 166 0 0 chr21 20288317 20288606 -14618964 + AluJo SINE Alu 1 289 -23 278 295 70 49 chr21 20289333 20289618 -14617952 - L2 LINE L2 -1208 2106 1816 2289 120 11 37 chr21 20289789 20290163 -14617407 - THE1B LTR MaLR 0 364 1 496 268 82 72 chr21 20290875 20290963 -14616607 + MLT1G LTR MaLR 77 163 -432 1736 182 0 3 chr21 20290963 20291271 -14616299 - AluJb SINE Alu -5 307 1 496 268 82 72 chr21 20291271 20291621 -14615949 + MLT1G LTR MaLR 163 561 -34 797 188 0 0 chr21 20291773 20291906 -14615664 - FLAM_A SINE Alu 0 133 1 560 238 14 0 chr21 20292177 20292320 -14615250 - L1ME4a LINE L1 -18 6103 5959 518 277 55 6 chr21 20292342 20292652 -14614918 - L1ME4a LINE L1 -207 5914 5559 405 157 0 0 chr21 20292859 20292929 -14614641 - MER58 DNA MER1_type -35 2385 2316 276 111 0 0 chr21 20293566 20293611 -14613959 + (GA)n Simple_repeat Simple_repeat 2 46 0 416 325 58 51 chr21 20293684 20293995 -14613575 - L1ME LINE L1 -309 5812 5500 313 234 107 96 chr21 20294097 20294537 -14613033 - L1ME LINE L1 -754 5392 4948 224 167 21 0 chr21 20294639 20294687 -14612883 + G-rich Low_complexity Low_complexity 2 50 0 21 36 0 0 chr21 20295452 20295480 -14612090 + AT_rich Low_complexity Low_complexity 1 28 0 1008 216 31 14 chr21 20296481 20296703 -14610867 - MIR SINE MIR -25 237 12 1998 129 7 0 chr21 20296854 20297148 -14610422 + AluSx SINE Alu 1 296 -16 266 190 23 0 chr21 20298138 20298196 -14609374 - MER5A DNA MER1_type -19 160 100 761 249 69 23 chr21 20298203 20298420 -14609150 - MIR SINE MIR -8 254 28 1827 208 11 17 chr21 20299267 20299622 -14607948 + MLT2C1 LTR ERVL 1 467 -53 192 77 0 0 chr21 20299622 20299648 -14607922 + (CAGA)n Simple_repeat Simple_repeat 3 28 0 1827 208 11 17 chr21 20299648 20299667 -14607903 + MLT2C1 LTR ERVL 467 485 -35 230 284 118 20 chr21 20299983 20300117 -14607453 - MER5B DNA MER1_type -38 140 3 289 233 18 95 chr21 20301537 20301592 -14605978 + MIR SINE MIR 30 88 -125 2520 97 28 22 chr21 20301592 20301954 -14605616 - THE1B LTR MaLR 0 364 1 289 233 18 95 chr21 20301954 20302023 -14605547 + MIR SINE MIR 88 151 -62 356 200 11 0 chr21 20302570 20302665 -14604905 + (TGGA)n Simple_repeat Simple_repeat 4 99 0 523 335 56 0 chr21 20303101 20303280 -14604290 + MIR3 SINE MIR 16 204 -4 761 288 10 0 chr21 20303428 20303633 -14603937 + MIR SINE MIR 55 261 -1 2531 173 15 22 chr21 20304262 20304725 -14602845 - MLT1C LTR MaLR -7 460 1 2149 104 0 0 chr21 20304757 20305054 -14602516 - AluSx SINE Alu -15 297 1 2247 100 0 0 chr21 20305306 20305607 -14601963 - AluSx SINE Alu -1 311 11 233 274 16 13 chr21 20307075 20307185 -14600385 + MIR SINE MIR 37 150 -58 493 15 30 0 chr21 20307272 20307338 -14600232 + (CA)n Simple_repeat Simple_repeat 2 69 0 22 35 0 0 chr21 20307403 20307432 -14600138 + AT_rich Low_complexity Low_complexity 1 29 0 475 336 60 56 chr21 20307490 20307922 -14599648 - L1ME4a LINE L1 -1 6120 5687 327 283 100 17 chr21 20308181 20308301 -14599269 - L1ME4a LINE L1 -491 5630 5501 2047 109 0 3 chr21 20308439 20308749 -14598821 - AluSq SINE Alu 0 309 1 482 303 84 55 chr21 20309282 20309625 -14597945 - L1ME4a LINE L1 -1397 4749 4397 346 199 108 167 chr21 20310129 20310315 -14597255 - MER5B DNA MER1_type -2 176 2 554 233 50 50 chr21 20310348 20310550 -14597020 - LTR67 LTR ERVL -16 541 340 236 187 53 27 chr21 20310724 20310799 -14596771 - MER69 DNA AcHobo -177 2349 2273 443 100 14 0 chr21 20310799 20310869 -14596701 + (TC)n Simple_repeat Simple_repeat 1 71 0 2160 114 0 0 chr21 20310869 20311166 -14596404 - AluSx SINE Alu -15 297 1 635 179 18 0 chr21 20311197 20311309 -14596261 - MLT1A2 LTR MaLR 0 374 261 349 132 94 66 chr21 20311467 20311573 -14595997 - MER69 DNA AcHobo -299 2227 2119 2437 161 69 0 chr21 20311573 20312008 -14595562 - L1MC3 LINE L1 -35 7750 7286 617 200 26 19 chr21 20312010 20312165 -14595405 - MER69 DNA AcHobo -337 2189 2034 2208 240 47 16 chr21 20312173 20312732 -14594838 - MER69 DNA AcHobo -1950 576 1 664 288 44 15 chr21 20312769 20312974 -14594596 - LTR67 LTR ERVL -235 322 112 282 194 0 15 chr21 20314111 20314178 -14593392 + CT-rich Low_complexity Low_complexity 1 180 0 1957 125 44 7 chr21 20314178 20314476 -14593094 - AluSx SINE Alu -4 308 1 248 254 16 32 chr21 20315287 20315350 -14592220 + MER77 LTR ERV1 53 114 -491 910 120 0 0 chr21 20315352 20315477 -14592093 + AluY SINE Alu 181 305 -6 1832 238 94 12 chr21 20315477 20315933 -14591637 + MER77 LTR ERV1 130 601 -4 945 98 0 0 chr21 20316654 20316776 -14590794 + AluY SINE Alu 181 302 -9 564 231 0 8 chr21 20316776 20316897 -14590673 + MER77 LTR ERV1 130 249 -356 439 243 48 49 chr21 20317640 20317803 -14589767 + MLT1J2 LTR MaLR 39 241 -270 481 205 26 0 chr21 20318327 20318444 -14589126 - L1ME2 LINE L1 -19 6145 6026 322 280 56 7 chr21 20318569 20318709 -14588861 - MIR SINE MIR -74 188 38 2348 104 0 0 chr21 20319345 20319644 -14587926 + AluSg SINE Alu 1 299 -11 727 254 100 53 chr21 20319744 20320063 -14587507 + MLT1J LTR MaLR 100 433 -78 213 309 52 31 chr21 20320238 20320335 -14587235 + MIR SINE MIR 33 131 -77 2280 100 7 3 chr21 20320602 20320903 -14586667 - AluSc SINE Alu -7 302 1 300 308 15 39 chr21 20321424 20321554 -14586016 - MER5A DNA MER1_type 0 189 63 1819 196 79 43 chr21 20322660 20323076 -14584494 - MLT1C LTR MaLR -7 460 26 2263 113 51 25 chr21 20323076 20323431 -14584139 - THE1B LTR MaLR 0 364 1 1819 196 79 43 chr21 20323431 20323458 -14584112 - MLT1C LTR MaLR -441 26 1 494 183 11 40 chr21 20323540 20323715 -14583855 + CT-rich Low_complexity Low_complexity 1 170 0 422 214 19 39 chr21 20325007 20325110 -14582460 + MLT1J LTR MaLR 102 202 -309 285 135 0 19 chr21 20325301 20325353 -14582217 + MLT1J LTR MaLR 417 467 -44 2817 31 0 0 chr21 20325600 20325918 -14581652 + AluYb8 SINE Alu 1 318 0 210 71 0 0 chr21 20326397 20326425 -14581145 + (T)n Simple_repeat Simple_repeat 1 28 0 1392 241 31 47 chr21 20326911 20327281 -14580289 + MLT1I LTR MaLR 70 403 -6 2125 112 50 34 chr21 20327513 20327871 -14579699 - THE1B LTR MaLR 0 364 1 589 259 41 0 chr21 20328066 20328213 -14579357 + MIR SINE MIR 26 178 -84 2182 108 23 3 chr21 20328495 20328801 -14578769 - AluSx SINE Alu 0 312 1 817 228 27 23 chr21 20330206 20330425 -14577145 - MIR SINE MIR -10 252 33 700 306 130 70 chr21 20331235 20332215 -14575355 - L3 LINE CR1 -161 1416 365 2218 110 0 23 chr21 20332215 20332525 -14575045 + AluSx SINE Alu 1 303 -9 700 306 130 70 chr21 20332525 20332624 -14574946 - L3 LINE CR1 -1212 365 273 1043 261 77 23 chr21 20332635 20332984 -14574586 + MLT1K LTR MaLR 169 536 -52 761 224 33 0 chr21 20333050 20333233 -14574337 - L1M4 LINE L1 -3145 3001 2813 1472 210 88 34 chr21 20333988 20334430 -14573140 + MLT1C LTR MaLR 1 466 -1 3825 97 8 6 chr21 20334489 20334993 -14572577 + MER1A DNA MER1_type 25 529 0 441 278 68 29 chr21 20335545 20335750 -14571820 + MLT1L LTR MaLR 179 391 -224 2266 119 36 28 chr21 20335979 20336340 -14571230 - THE1B LTR MaLR 0 364 1 2098 250 41 28 chr21 20337116 20337727 -14569843 - L1ME1 LINE L1 -5 6161 5543 881 204 49 83 chr21 20337725 20337853 -14569717 - L1ME1 LINE L1 -987 5159 5028 2006 113 3 33 chr21 20337853 20338153 -14569417 + AluSx SINE Alu 1 291 -21 881 204 49 83 chr21 20338153 20338348 -14569222 - L1ME1 LINE L1 -1118 5028 4847 1143 128 0 0 chr21 20338348 20338504 -14569066 + AluSg/x SINE Alu 146 301 -9 5967 177 37 26 chr21 20338514 20340221 -14567349 + L1MC1 LINE L1 4603 6326 -7 2552 240 32 40 chr21 20340227 20341063 -14566507 - L1ME1 LINE L1 -1287 4859 3989 2282 110 3 0 chr21 20341063 20341371 -14566199 + AluSg SINE Alu 1 309 -1 2552 240 32 40 chr21 20341371 20341524 -14566046 - L1ME1 LINE L1 -2157 3989 3836 696 150 0 8 chr21 20341678 20341798 -14565772 - L1PA15 LINE L1 0 6165 6047 498 274 36 0 chr21 20341804 20341972 -14565598 - L1ME1 LINE L1 -2329 3817 3644 534 243 7 29 chr21 20342022 20342158 -14565412 + L2 LINE L2 3181 3313 0 641 264 0 0 chr21 20342321 20342465 -14565105 + MIR SINE MIR 31 174 -88 2212 91 7 3 chr21 20344014 20344329 -14563241 + AluSq SINE Alu 1 316 0 1805 169 26 20 chr21 20345514 20345858 -14561712 + MLT2C1 LTR ERVL 3 348 -49 267 79 0 0 chr21 20345861 20345899 -14561671 + (TC)n Simple_repeat Simple_repeat 2 39 0 34 42 0 0 chr21 20345899 20345947 -14561623 + AT_rich Low_complexity Low_complexity 1 48 0 331 89 0 25 chr21 20345947 20345964 -14561606 + MLT2C1 LTR ERVL 356 372 -25 884 88 41 0 chr21 20345964 20346135 -14561435 + (TCTA)n Simple_repeat Simple_repeat 1 178 0 331 89 0 25 chr21 20346135 20346179 -14561391 + MLT2C1 LTR ERVL 372 397 0 229 250 81 32 chr21 20347081 20347205 -14560365 - L3 LINE CR1 -51 1526 1397 2094 132 10 0 chr21 20347468 20347763 -14559807 - AluSg SINE Alu -12 298 1 2023 138 24 18 chr21 20347763 20348104 -14559466 - L1MB8 LINE L1 -1 6177 5835 5417 124 17 10 chr21 20348117 20348936 -14558634 - Tigger1 DNA MER2_type -1463 955 131 2259 118 3 16 chr21 20349047 20349362 -14558208 - AluSx SINE Alu -1 311 1 2286 101 3 3 chr21 20350800 20351098 -14556472 + AluSc SINE Alu 1 298 -11 5075 88 10 31 chr21 20351597 20352303 -14555267 + LTR8 LTR ERV1 1 691 0 554 266 32 37 chr21 20353735 20353923 -14553647 + HAL1 LINE L1 378 564 -1943 884 125 22 0 chr21 20354189 20354325 -14553245 - L1MB5 LINE L1 -8 6166 6028 1840 228 66 70 chr21 20354573 20355227 -14552343 + HAL1 LINE L1 1048 1703 -804 2604 56 0 3 chr21 20355227 20355531 -14552039 - AluY SINE Alu -8 303 1 1840 228 66 70 chr21 20355531 20355592 -14551978 + HAL1 LINE L1 1703 1763 -744 2242 130 0 0 chr21 20355592 20355893 -14551677 + AluSx SINE Alu 1 301 -11 1840 228 66 70 chr21 20355893 20355965 -14551605 + HAL1 LINE L1 1763 1833 -674 936 253 75 61 chr21 20356103 20356277 -14551293 + HAL1 LINE L1 1991 2161 -346 1733 101 31 0 chr21 20356277 20356535 -14551035 - L1MA2 LINE L1 0 6304 6039 936 253 75 61 chr21 20356535 20356730 -14550840 + HAL1 LINE L1 2161 2371 -136 1982 137 20 10 chr21 20356730 20357030 -14550540 + AluJb SINE Alu 1 303 -9 936 253 75 61 chr21 20357030 20357165 -14550405 + HAL1 LINE L1 2371 2503 -4 587 282 114 13 chr21 20357861 20358088 -14549482 - MIR SINE MIR 0 262 13 1986 171 43 0 chr21 20358588 20358938 -14548632 + MLT1A1 LTR MaLR 1 365 0 430 228 0 0 chr21 20359174 20359266 -14548304 + MLT1G1 LTR MaLR 346 437 -112 509 254 66 56 chr21 20359573 20359786 -14547784 + MLT1J LTR MaLR 5 219 -292 2191 123 7 3 chr21 20359853 20360344 -14547226 + AluSx SINE Alu 1 492 0 218 281 18 0 chr21 20360566 20360623 -14546947 - MIR SINE MIR -112 150 93 257 234 0 0 chr21 20360727 20360774 -14546796 + MLT1I LTR MaLR 98 144 -265 476 224 61 13 chr21 20360977 20361128 -14546442 + MLT1G1 LTR MaLR 392 590 -1 303 271 115 10 chr21 20361977 20362073 -14545497 - MLT1G3 LTR MaLR -411 119 14 557 290 28 28 chr21 20362502 20362678 -14544892 - MIR SINE MIR -27 235 60 365 250 95 26 chr21 20362684 20362800 -14544770 - MIR SINE MIR -65 143 20 2006 113 0 0 chr21 20363253 20363519 -14544051 + AluSx SINE Alu 15 280 -32 312 27 0 0 chr21 20363521 20363558 -14544012 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 2297 105 0 3 chr21 20364246 20364559 -14543011 + AluSx SINE Alu 1 312 0 272 164 45 30 chr21 20365575 20365642 -14541928 + L2 LINE L2 3205 3272 0 207 324 0 28 chr21 20366633 20366704 -14540866 - MIR SINE MIR -58 150 82 1659 200 131 49 chr21 20367018 20367484 -14540086 + MLT1D LTR MaLR 2 505 0 371 316 81 0 chr21 20367578 20367714 -14539856 - L2 LINE L2 -2 3311 3165 343 256 176 55 chr21 20368060 20368126 -14539444 - L2 LINE L2 -663 2651 2594 4479 153 33 39 chr21 20368126 20368916 -14538654 + LTR1 LTR ERV1 1 785 0 343 256 176 55 chr21 20368916 20369122 -14538448 - L2 LINE L2 -720 2594 2346 1194 122 11 11 chr21 20369538 20369718 -14537852 + THE1A LTR MaLR 1 180 -175 2012 139 19 44 chr21 20369726 20370086 -14537484 + THE1B LTR MaLR 14 364 0 519 262 103 0 chr21 20370081 20370226 -14537344 - MER58A DNA MER1_type 0 162 3 359 176 99 22 chr21 20371031 20371122 -14536448 - L1ME4a LINE L1 -50 6071 5974 493 299 7 0 chr21 20371236 20371380 -14536190 - L1ME4a LINE L1 -341 5780 5636 271 338 68 30 chr21 20372173 20372306 -14535264 - MER5B DNA MER1_type 0 178 41 310 196 10 108 chr21 20374463 20374565 -14533005 + MER39B LTR ERV1 2 93 -560 1706 181 23 3 chr21 20374540 20374843 -14532727 + MER39 LTR ERV1 260 568 -139 1531 171 51 25 chr21 20374869 20375144 -14532426 - AluJo SINE Alu -30 282 1 695 165 8 23 chr21 20375150 20375283 -14532287 + MER39 LTR ERV1 560 690 -17 2134 112 14 0 chr21 20375285 20375580 -14531990 - AluSp SINE Alu -14 299 1 1569 206 88 57 chr21 20375728 20376218 -14531352 - MLT1D LTR MaLR 0 505 1 251 266 81 97 chr21 20376666 20376790 -14530780 + L2 LINE L2 3151 3272 0 1674 234 61 74 chr21 20377352 20377724 -14529846 + L1ME LINE L1 498 873 -5207 2195 108 3 16 chr21 20377724 20378038 -14529532 + AluSx SINE Alu 1 310 -2 1674 234 61 74 chr21 20378038 20378820 -14528750 + L1ME LINE L1 873 1606 -4474 434 289 82 7 chr21 20378861 20378996 -14528574 + MLT2E LTR ERVL 33 177 -451 6193 255 80 8 chr21 20378998 20380619 -14526951 + ERVL-E LTR ERVL 3661 5397 -367 422 223 93 22 chr21 20380685 20380824 -14526746 + ERVL-E LTR ERVL 5604 5752 -12 1587 113 40 5 chr21 20380825 20381047 -14526523 + MER30 DNA MER1_type 1 230 0 2469 228 32 41 chr21 20381055 20381180 -14526390 + MLT2E LTR ERVL 1 126 -502 2195 73 0 60 chr21 20381180 20381517 -14526053 + AluY SINE Alu 1 319 0 2469 228 32 41 chr21 20381517 20381968 -14525602 + MLT2E LTR ERVL 126 574 -54 502 60 0 200 chr21 20381968 20382068 -14525502 - MADE1 DNA Mariner 0 80 1 2469 228 32 41 chr21 20382068 20382117 -14525453 + MLT2E LTR ERVL 574 622 -6 2004 220 49 30 chr21 20382159 20382709 -14524861 - MLT2B3 LTR ERVL -10 520 2 534 281 35 18 chr21 20382712 20382883 -14524687 - MLT1I LTR MaLR -217 192 19 402 157 0 67 chr21 20383155 20383233 -14524337 - L1MC2 LINE L1 -11 6333 6260 5247 78 71 7 chr21 20383233 20383699 -14523871 - MER4E LTR ERV1 0 766 236 180 0 0 0 chr21 20383699 20383719 -14523851 + (GGAA)n Simple_repeat Simple_repeat 1 20 0 5247 78 71 7 chr21 20383719 20383972 -14523598 - MER4E LTR ERV1 -530 236 1 6804 145 24 14 chr21 20384819 20386792 -14520778 - MER4E-int LTR ERV1 -107 6651 4452 3073 143 81 67 chr21 20386791 20387104 -14520466 - MER4E-int LTR ERV1 -2670 4088 3781 2022 117 0 55 chr21 20387104 20387430 -14520140 - AluSg SINE Alu -2 308 1 3073 143 81 67 chr21 20387430 20387757 -14519813 - MER4E-int LTR ERV1 -2977 3781 3439 7730 113 78 33 chr21 20387761 20388533 -14519037 - MER4E-int LTR ERV1 -3660 3098 2362 2257 116 0 0 chr21 20388533 20388836 -14518734 - AluSp SINE Alu -10 303 1 7730 113 78 33 chr21 20388836 20389590 -14517980 - MER4E-int LTR ERV1 -4396 2362 1504 5650 75 19 0 chr21 20389590 20390332 -14517238 - MER4E LTR ERV1 -10 756 1 447 19 0 0 chr21 20390347 20390399 -14517171 + (CA)n Simple_repeat Simple_repeat 2 53 0 230 139 0 0 chr21 20390401 20390437 -14517133 - L1MC3 LINE L1 -94 7691 7656 1711 154 8 44 chr21 20390437 20390708 -14516862 - MER4A LTR ERV1 0 664 348 2188 88 56 0 chr21 20390708 20390992 -14516578 - AluSp SINE Alu -13 300 1 1711 154 8 44 chr21 20390992 20391078 -14516492 - MER4A LTR ERV1 -316 348 261 623 128 20 10 chr21 20391075 20391177 -14516393 - MER4A LTR ERV1 -561 103 1 1562 169 22 29 chr21 20391177 20391491 -14516079 - L1MC3 LINE L1 -127 7658 7347 2080 115 0 3 chr21 20391532 20391853 -14515717 - AluSx SINE Alu 0 320 1 256 357 62 0 chr21 20391891 20392020 -14515550 - MIR SINE MIR -123 139 3 296 311 140 26 chr21 20392048 20392241 -14515329 - MIR SINE MIR -36 226 12 309 336 70 14 chr21 20392654 20392797 -14514773 + L2 LINE L2 3121 3271 -1 1593 168 80 34 chr21 20393906 20394275 -14513295 - MSTB1 LTR MaLR -19 356 1 186 118 0 0 chr21 20394693 20394727 -14512843 + (TA)n Simple_repeat Simple_repeat 1 34 0 2001 91 38 0 chr21 20395113 20395378 -14512192 + AluSp SINE Alu 1 275 -38 276 160 120 0 chr21 20395379 20395454 -14512116 + L1MC4a LINE L1 7414 7497 -311 180 77 0 0 chr21 20395460 20395486 -14512084 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 257 125 0 21 chr21 20395668 20395716 -14511854 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 722 216 179 8 chr21 20396097 20396393 -14511177 + L1MC4 LINE L1 5924 6146 -20 1889 159 53 33 chr21 20396392 20396644 -14510926 + L1MD3 LINE L1 6712 6976 -1019 180 77 0 0 chr21 20396644 20396670 -14510900 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1889 159 53 33 chr21 20396670 20396814 -14510756 + L1MD3 LINE L1 6976 7116 -879 348 206 21 72 chr21 20396814 20396911 -14510659 + MLT1G1 LTR MaLR 77 168 -427 335 206 0 0 chr21 20396911 20396974 -14510596 + L1MD3 LINE L1 7408 7470 -525 674 173 6 89 chr21 20396971 20397139 -14510431 + L1PA16 LINE L1 6008 6161 -5 346 366 52 12 chr21 20397183 20397355 -14510215 + L1MDa LINE L1 916 1094 -5446 370 311 58 22 chr21 20397362 20397722 -14509848 + L1MDa LINE L1 1166 1538 -4992 354 275 93 47 chr21 20397728 20397989 -14509581 + L1MDa LINE L1 1413 1697 -4843 1421 222 37 60 chr21 20397989 20398372 -14509198 + MLT1A2 LTR MaLR 1 374 0 354 275 93 47 chr21 20398372 20398474 -14509096 + L1MDa LINE L1 1697 1793 -4747 560 332 91 23 chr21 20398599 20398996 -14508574 + L1MDa LINE L1 2201 2624 -4097 5001 215 65 25 chr21 20399019 20400216 -14507354 + L1M4 LINE L1 29 1273 -5269 1063 110 55 0 chr21 20400214 20400377 -14507193 + L1P4 LINE L1 5634 5805 -361 308 207 0 0 chr21 20400378 20400436 -14507134 + L1MB7 LINE L1 373 430 -6112 897 233 20 8 chr21 20400501 20400750 -14506820 + L1MB7 LINE L1 1294 1545 -4997 3853 197 9 32 chr21 20400775 20401507 -14506063 + L1MB7 LINE L1 4220 4930 -1714 2258 154 12 3 chr21 20401507 20401852 -14505718 - MER7A DNA MER2_type 0 346 1 3853 197 9 32 chr21 20401852 20401999 -14505571 + L1MB7 LINE L1 4930 5079 -1565 2997 163 8 0 chr21 20401998 20402490 -14505080 + L1MA9 LINE L1 5285 5780 -532 387 127 99 0 chr21 20402503 20402574 -14504996 + L1MA9 LINE L1 6202 6279 -33 2406 192 48 64 chr21 20402578 20403248 -14504322 + L1MB7 LINE L1 5063 5721 -923 4075 167 59 7 chr21 20403252 20404012 -14503558 + L1MB7 LINE L1 5878 6677 -5 2194 93 0 0 chr21 20404017 20404296 -14503274 - AluSc SINE Alu -2 307 29 1549 273 67 15 chr21 20404366 20404503 -14503067 + L1M4 LINE L1 2721 2849 -3795 443 161 46 11 chr21 20404503 20404590 -14502980 + L1PA5 LINE L1 6048 6137 -17 1549 273 67 15 chr21 20404590 20405019 -14502551 + L1M4 LINE L1 2849 3324 -3320 7303 126 58 16 chr21 20405019 20405589 -14501981 - Tigger3b DNA MER2_type -1797 1231 687 1987 147 3 10 chr21 20405589 20405896 -14501674 + AluSg SINE Alu 1 305 -5 7303 126 58 16 chr21 20405896 20406505 -14501065 - Tigger3b DNA MER2_type -2341 687 2 1549 273 67 15 chr21 20406505 20406548 -14501022 + L1M4 LINE L1 3324 3363 -3281 783 207 33 43 chr21 20406556 20406860 -14500710 + L1M4 LINE L1 3413 3713 -2931 352 279 0 7 chr21 20406879 20407019 -14500551 + L1M4 LINE L1 4060 4198 -2446 2666 229 59 50 chr21 20407065 20407964 -14499606 + L1M4 LINE L1 4183 5093 -1551 1656 191 0 16 chr21 20407964 20408273 -14499297 - AluJo SINE Alu 0 312 9 2666 229 59 50 chr21 20408273 20408383 -14499187 + L1M4 LINE L1 5093 5201 -1443 312 254 181 22 chr21 20408583 20408721 -14498849 - HAL1 LINE L1 -919 1588 1429 914 229 86 63 chr21 20408758 20409221 -14498349 - L1MEd LINE L1 -4862 1257 784 219 188 0 0 chr21 20409493 20409541 -14498029 + (CA)n Simple_repeat Simple_repeat 1 48 0 234 239 87 11 chr21 20409630 20409722 -14497848 - L1MEd LINE L1 -5973 146 48 254 324 22 14 chr21 20410648 20410787 -14496783 - L1M1 LINE L1 -669 5636 5497 2720 176 45 27 chr21 20411003 20411514 -14496056 + MLT2B1 LTR ERVL 1 520 0 191 294 20 0 chr21 20412076 20412127 -14495443 + L2 LINE L2 3210 3261 -11 349 242 111 59 chr21 20412195 20412348 -14495222 + MER117 DNA MER1_type 9 169 -28 253 260 126 55 chr21 20412774 20412901 -14494669 + MIR3 SINE MIR 60 195 -13 281 288 45 27 chr21 20413660 20413771 -14493799 + MARNA DNA Mariner 152 264 -322 1492 227 17 32 chr21 20417830 20417893 -14489677 - LTR40b LTR ERVL 0 462 400 1644 172 28 89 chr21 20417893 20418288 -14489282 + MLT1A2 LTR MaLR 4 374 0 1492 227 17 32 chr21 20418288 20418572 -14488998 - LTR40b LTR ERVL -62 400 120 563 182 18 0 chr21 20418855 20418965 -14488605 - LTR40a LTR ERVL -404 115 4 1892 167 0 22 chr21 20419323 20419640 -14487930 - AluJb SINE Alu -2 310 1 223 338 104 0 chr21 20421155 20421232 -14486338 + L2 LINE L2 3188 3272 0 1732 166 29 16 chr21 20421369 20421676 -14485894 + AluJo SINE Alu 1 311 -1 2300 115 0 3 chr21 20421683 20421995 -14485575 + AluSq SINE Alu 1 311 -2 531 56 0 0 chr21 20423528 20423599 -14483971 + (TAGA)n Simple_repeat Simple_repeat 3 73 0 761 189 107 25 chr21 20423914 20424110 -14483460 - MER20 DNA MER1_type -3 216 5 430 192 81 0 chr21 20424289 20424388 -14483182 + L1P5 LINE L1 5685 5791 -365 2075 175 16 10 chr21 20424415 20424439 -14483131 + L1PB4 LINE L1 5754 5776 -380 2289 97 3 7 chr21 20424439 20424737 -14482833 + AluSp SINE Alu 1 297 -16 2075 175 16 10 chr21 20424737 20425100 -14482470 + L1PB4 LINE L1 5776 6143 -13 189 0 0 0 chr21 20425111 20425132 -14482438 + (TAAAA)n Simple_repeat Simple_repeat 3 23 0 249 224 0 0 chr21 20425134 20425201 -14482369 - Charlie4 DNA MER1_type -84 1877 1811 900 269 16 8 chr21 20425220 20425473 -14482097 - Charlie4 DNA MER1_type -1677 284 30 2144 132 0 0 chr21 20425799 20426095 -14481475 + AluSx SINE Alu 1 296 -16 1288 222 81 36 chr21 20426107 20426441 -14481129 + MLT2B2 LTR ERVL 1 349 -166 2178 112 24 0 chr21 20426521 20426815 -14480755 - AluSx SINE Alu -11 301 1 246 165 24 12 chr21 20426845 20426930 -14480640 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 232 139 0 0 chr21 20426931 20426967 -14480603 + MLT2B2 LTR ERVL 355 390 -7 33 0 0 0 chr21 20428369 20428402 -14479168 + AT_rich Low_complexity Low_complexity 1 33 0 254 143 20 0 chr21 20428940 20428989 -14478581 + AluSp/q SINE Alu 254 303 0 2307 101 7 0 chr21 20429587 20429894 -14477676 + AluSx SINE Alu 1 309 -3 1261 204 5 0 chr21 20430126 20430347 -14477223 - MER58A DNA MER1_type -2 222 1 2420 78 0 16 chr21 20430491 20430799 -14476771 - AluY SINE Alu -8 303 1 1815 171 100 3 chr21 20431007 20431346 -14476224 - MSTB LTR MaLR -4 422 51 1984 140 26 13 chr21 20431600 20431907 -14475663 + AluJo SINE Alu 1 311 -1 1414 238 93 76 chr21 20431945 20432068 -14475502 + HAL1 LINE L1 802 921 -1586 1915 178 3 0 chr21 20432068 20432377 -14475193 + AluJb SINE Alu 1 310 -2 1414 238 93 76 chr21 20432377 20432534 -14475036 + HAL1 LINE L1 921 1074 -1433 3516 142 20 8 chr21 20432534 20433124 -14474446 - L1MB3 LINE L1 -16 6167 5571 1414 238 93 76 chr21 20433124 20433667 -14473903 + HAL1 LINE L1 1074 1640 -867 2143 131 10 7 chr21 20433675 20433980 -14473590 - AluJo SINE Alu -6 306 1 237 222 117 74 chr21 20434109 20434278 -14473292 + HAL1 LINE L1 1854 2037 -470 2120 138 0 0 chr21 20434278 20434583 -14472987 + AluSg SINE Alu 1 305 -5 237 222 117 74 chr21 20434583 20434643 -14472927 + HAL1 LINE L1 2037 2093 -414 1743 149 65 0 chr21 20434684 20434959 -14472611 + AluSx SINE Alu 1 293 -19 2438 52 3 0 chr21 20435159 20435445 -14472125 - AluY SINE Alu -5 306 20 497 194 8 40 chr21 20436615 20436739 -14470831 + HAL1 LINE L1 2091 2210 -297 309 346 36 36 chr21 20436865 20437194 -14470376 - LTR67 LTR ERVL -142 415 87 527 268 52 22 chr21 20437266 20437497 -14470073 + HAL1 LINE L1 2270 2507 0 210 167 0 0 chr21 20437723 20437759 -14469811 + T-rich Low_complexity Low_complexity 1 36 0 775 196 64 35 chr21 20437915 20438088 -14469482 + MER45A DNA AcHobo 1 178 0 3103 108 7 0 chr21 20438273 20438698 -14468872 + MSTA LTR MaLR 1 428 0 215 289 48 58 chr21 20439519 20439547 -14468023 - MIR SINE MIR -74 188 161 487 104 39 0 chr21 20439547 20439624 -14467946 - MADE1 DNA Mariner 0 80 1 215 289 48 58 chr21 20439624 20439656 -14467914 - MIR SINE MIR -101 161 130 2522 119 5 11 chr21 20439656 20440033 -14467537 + THE1C LTR MaLR 1 375 0 215 289 48 58 chr21 20440033 20440075 -14467495 - MIR SINE MIR -132 130 86 693 230 41 10 chr21 20440203 20440399 -14467171 + MIR SINE MIR 61 262 0 2187 130 0 0 chr21 20441102 20441402 -14466168 - AluSx SINE Alu -12 300 1 2350 134 22 3 chr21 20442698 20443055 -14464515 + THE1B LTR MaLR 1 364 0 1171 269 51 22 chr21 20443092 20443501 -14464069 + L1MC4a LINE L1 5501 5921 -1887 993 178 205 9 chr21 20443761 20444060 -14463510 - MLT1D LTR MaLR -79 426 1 7184 208 56 43 chr21 20446065 20447973 -14459597 + L1M4 LINE L1 5 1888 -4937 2525 87 0 0 chr21 20447973 20448283 -14459287 + AluY SINE Alu 1 310 -1 7184 208 56 43 chr21 20448283 20448878 -14458692 + L1M4 LINE L1 1888 2669 -4156 2020 112 0 11 chr21 20448878 20449146 -14458424 + AluSx SINE Alu 35 299 -13 7184 208 56 43 chr21 20449146 20449213 -14458357 + L1M4 LINE L1 2669 2734 -4091 33447 84 4 11 chr21 20449237 20451661 -14455909 + L1PA2 LINE L1 1 2443 -4027 1946 116 20 50 chr21 20451661 20451963 -14455607 + AluSg1 SINE Alu 3 295 -14 33447 84 4 11 chr21 20451963 20452711 -14454859 + L1PA2 LINE L1 2443 3195 -3275 2281 102 3 16 chr21 20452711 20453024 -14454546 + AluY SINE Alu 1 309 -2 33447 84 4 11 chr21 20453024 20456355 -14451215 + L1PA2 LINE L1 3195 6470 0 9000 198 46 21 chr21 20456394 20458141 -14449429 + L1M4 LINE L1 2714 4532 -2112 2243 117 0 0 chr21 20458141 20458448 -14449122 - AluSg SINE Alu -3 307 1 9000 198 46 21 chr21 20458448 20458983 -14448587 + L1M4 LINE L1 4532 5052 -1592 322 122 0 0 chr21 20460377 20460426 -14447144 + MIR SINE MIR 95 143 -65 2578 183 28 28 chr21 20460642 20461014 -14446556 + L1MA9 LINE L1 5331 5702 -976 2173 113 3 7 chr21 20461014 20461314 -14446256 + AluSx SINE Alu 1 299 -13 2578 183 28 28 chr21 20461314 20461718 -14445852 + L1MA9 LINE L1 5702 6106 -572 2101 71 4 0 chr21 20461718 20462001 -14445569 + AluY SINE Alu 26 309 0 2578 183 28 28 chr21 20462001 20462184 -14445386 + L1MA9 LINE L1 6105 6287 -391 208 344 0 13 chr21 20462184 20462335 -14445235 + (TATATG)n Simple_repeat Simple_repeat 3 151 0 272 269 41 14 chr21 20462351 20462496 -14445074 + (CATATA)n Simple_repeat Simple_repeat 4 152 0 251 96 19 58 chr21 20462503 20462555 -14445015 - L1M3 LINE L1 -343 5837 5788 1815 178 5 26 chr21 20462595 20462972 -14444598 + L1MA9 LINE L1 6279 6647 -163 1807 168 71 0 chr21 20463932 20464284 -14443286 + L1MC3 LINE L1 7400 7776 -9 1744 125 48 10 chr21 20464587 20464963 -14442607 + MSTB LTR MaLR 1 424 -2 308 210 32 0 chr21 20465102 20465164 -14442406 - MER117 DNA MER1_type -43 154 91 1028 214 77 16 chr21 20465167 20465571 -14441999 + LTR16A1 LTR ERVL 4 449 -8 388 127 13 51 chr21 20465565 20465644 -14441926 - MER117 DNA MER1_type -120 77 2 21 0 0 0 chr21 20466128 20466149 -14441421 + AT_rich Low_complexity Low_complexity 1 21 0 2309 81 0 29 chr21 20466154 20466461 -14441109 + AluY SINE Alu 1 298 -13 1063 267 68 38 chr21 20466502 20466955 -14440615 - MLT1J LTR MaLR -33 478 12 1092 235 44 30 chr21 20467140 20467438 -14440132 + MLT1I LTR MaLR 108 409 0 274 284 62 0 chr21 20468059 20468140 -14439430 - MLT1L LTR MaLR -221 394 309 512 192 0 19 chr21 20468310 20468414 -14439156 - MLT1I LTR MaLR -3 406 305 1723 169 53 42 chr21 20470250 20470606 -14436964 + MLT1A1 LTR MaLR 5 364 -1 202 243 100 43 chr21 20470641 20470711 -14436859 + MIR SINE MIR 119 192 -70 21 0 0 0 chr21 20471427 20471448 -14436122 + AT_rich Low_complexity Low_complexity 1 21 0 2416 31 3 7 chr21 20471935 20472241 -14435329 - AluY SINE Alu 0 311 1 261 260 140 0 chr21 20472731 20472831 -14434739 - L2 LINE L2 -13 3259 3146 1861 223 93 12 chr21 20472968 20473791 -14433779 + L1ME1 LINE L1 4761 5713 -453 1172 92 0 0 chr21 20473797 20473938 -14433632 + AluSq/x SINE Alu 1 141 -172 562 110 0 0 chr21 20473953 20474044 -14433526 + Alu SINE Alu 220 310 -1 1886 182 30 20 chr21 20474045 20474451 -14433119 + L1ME1 LINE L1 5711 6120 -46 266 208 69 88 chr21 20474337 20474496 -14433074 + L1MA10 LINE L1 6169 6324 -10 1801 169 14 0 chr21 20474516 20474795 -14432775 + AluJb SINE Alu 1 283 -29 198 0 0 0 chr21 20474797 20474819 -14432751 + (CCAA)n Simple_repeat Simple_repeat 2 23 0 301 300 65 62 chr21 20474860 20475167 -14432403 + L1 LINE L1 4696 5003 -1143 2606 146 26 0 chr21 20475899 20476316 -14431254 - MSTA LTR MaLR 0 428 1 1919 199 16 5 chr21 20477564 20477935 -14429635 + MLT1B LTR MaLR 1 375 -15 304 115 82 16 chr21 20478221 20478282 -14429288 + MLT1K LTR MaLR 509 573 -15 313 282 88 28 chr21 20478337 20478462 -14429108 - MIR SINE MIR -58 150 22 239 265 0 44 chr21 20478483 20478551 -14429019 + L2 LINE L2 3203 3267 -5 1150 158 57 6 chr21 20479647 20479981 -14427589 - MSTB LTR MaLR 0 432 1 274 267 0 0 chr21 20479989 20480064 -14427506 - MIR SINE MIR -71 191 117 2517 107 16 16 chr21 20480906 20481281 -14426289 + THE1C LTR MaLR 1 375 0 231 167 0 0 chr21 20481397 20481439 -14426131 + CT-rich Low_complexity Low_complexity 1 42 0 1264 164 5 19 chr21 20482046 20482254 -14425316 + AluJo SINE Alu 85 289 -23 623 152 7 15 chr21 20482254 20482527 -14425043 + GA-rich Low_complexity Low_complexity 1 270 0 2114 93 22 0 chr21 20484018 20484287 -14423283 + AluSg SINE Alu 1 275 -35 2153 87 45 14 chr21 20484319 20484606 -14422964 + AluSq SINE Alu 1 296 -17 196 240 20 0 chr21 20484714 20484764 -14422806 - MIR SINE MIR -124 138 88 351 273 86 27 chr21 20484902 20485089 -14422481 + L1ME4a LINE L1 5673 5870 -251 21 36 0 0 chr21 20485117 20485145 -14422425 + AT_rich Low_complexity Low_complexity 1 28 0 2102 125 0 7 chr21 20485296 20485593 -14421977 - AluSx SINE Alu -16 296 2 2316 89 0 7 chr21 20485669 20485973 -14421597 + AluY SINE Alu 1 302 -9 239 243 61 77 chr21 20487699 20487880 -14419690 - MIR3 SINE MIR -28 180 3 471 78 0 0 chr21 20488895 20488959 -14418611 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 1467 169 15 15 chr21 20488968 20489234 -14418336 - AluJo SINE Alu -46 266 1 307 282 0 0 chr21 20490364 20490435 -14417135 - L2 LINE L2 -211 3061 2991 2092 99 7 0 chr21 20490791 20491063 -14416507 + AluSx SINE Alu 1 274 -38 271 247 13 39 chr21 20491676 20491753 -14415817 - L2 LINE L2 -82 3190 3116 387 269 63 17 chr21 20492137 20492312 -14415258 + MIR SINE MIR 70 252 -10 2176 113 0 17 chr21 20493374 20493674 -14413896 + AluSx SINE Alu 1 295 -17 332 217 0 0 chr21 20493887 20493947 -14413623 + MER63 DNA MER1_type 691 750 -311 318 163 0 0 chr21 20493948 20493997 -14413573 + MER63 DNA MER1_type 978 1026 -35 241 320 86 34 chr21 20494541 20494716 -14412854 - MIR SINE MIR -42 220 37 6999 120 135 114 chr21 20495209 20496883 -14410687 + pTR5 LTR ERV1 332 2438 0 234 0 0 0 chr21 20497028 20497054 -14410516 + (CA)n Simple_repeat Simple_repeat 2 27 0 743 176 154 60 chr21 20498856 20499038 -14408532 - AluJb SINE Alu -20 292 94 23 0 0 0 chr21 20499184 20499207 -14408363 + AT_rich Low_complexity Low_complexity 1 23 0 1212 180 160 8 chr21 20499893 20500143 -14407427 + AluJo SINE Alu 2 289 -13 24 0 0 0 chr21 20500147 20500171 -14407399 + AT_rich Low_complexity Low_complexity 1 24 0 605 219 130 0 chr21 20500889 20501058 -14406512 - MER58A DNA MER1_type -33 191 1 680 158 47 0 chr21 20501675 20501802 -14405768 - AluJo SINE Alu -178 134 2 995 216 93 25 chr21 20502543 20502908 -14404662 - MER113 DNA MER1_type? -119 402 13 281 237 79 72 chr21 20502916 20503055 -14404515 + MIR3 SINE MIR 6 145 -63 283 284 78 0 chr21 20503071 20503173 -14404397 + MER113 DNA MER1_type? 5 114 -407 1592 209 80 40 chr21 20503201 20503603 -14403967 - MER21B LTR ERV1 -427 436 19 402 216 10 20 chr21 20503672 20503774 -14403796 + MLT1A1 LTR MaLR 11 111 -254 2212 106 6 3 chr21 20504255 20504566 -14403004 - AluSx SINE Alu 0 312 1 780 169 0 0 chr21 20505154 20505278 -14402292 + FLAM_C SINE Alu 3 126 -7 26 30 0 0 chr21 20505278 20505311 -14402259 + AT_rich Low_complexity Low_complexity 1 33 0 276 302 57 44 chr21 20505706 20505954 -14401616 + L2 LINE L2 2336 2586 -728 2331 67 0 3 chr21 20506264 20506547 -14401023 + AluY SINE Alu 26 307 -4 1544 167 19 19 chr21 20506713 20506977 -14400593 + AluJo SINE Alu 5 268 -44 307 143 0 152 chr21 20507057 20507162 -14400408 + HAL1b LINE L1 748 836 -512 2120 78 0 99 chr21 20507510 20507844 -14399726 - AluSc SINE Alu -8 301 1 560 285 46 0 chr21 20509370 20509521 -14398049 - MER5A DNA MER1_type -4 185 28 570 190 60 0 chr21 20509556 20509656 -14397914 - FLAM_C SINE Alu -32 111 6 190 265 74 93 chr21 20510255 20510470 -14397100 + MIR SINE MIR 20 230 -32 924 135 0 0 chr21 20510567 20510700 -14396870 - FLAM_A SINE Alu 0 142 10 2005 164 3 0 chr21 20511246 20511551 -14396019 + AluJb SINE Alu 1 306 -6 259 269 0 43 chr21 20511935 20512028 -14395542 + MLT1K LTR MaLR 483 571 -17 2270 109 17 0 chr21 20512185 20512479 -14395091 - AluSx SINE Alu -7 305 7 2076 96 71 41 chr21 20513062 20513426 -14394144 - THE1C LTR MaLR 0 375 1 541 267 31 0 chr21 20513972 20514133 -14393437 - LTR33 LTR ERVL -307 214 49 2085 127 14 0 chr21 20514548 20514839 -14392731 + AluSq SINE Alu 1 295 -18 2362 104 7 7 chr21 20514995 20515303 -14392267 - AluSx SINE Alu -4 308 1 535 251 109 17 chr21 20515639 20515814 -14391756 + HAL1 LINE L1 1106 1296 -1211 2033 135 35 3 chr21 20515817 20516106 -14391464 + AluSx SINE Alu 1 298 -14 197 132 26 0 chr21 20516119 20516157 -14391413 + A-rich Low_complexity Low_complexity 5 43 0 403 133 0 0 chr21 20516190 20516250 -14391320 + Alu SINE Alu 240 299 -13 253 219 37 0 chr21 20516260 20516342 -14391228 + GA-rich Low_complexity Low_complexity 4 88 0 492 264 149 19 chr21 20516413 20516682 -14390888 + HAL1 LINE L1 1375 1678 -829 2400 91 0 0 chr21 20516684 20516982 -14390588 - AluSx SINE Alu -14 298 1 1222 300 58 19 chr21 20517016 20517304 -14390266 + L1MC1 LINE L1 5327 5602 -2206 315 0 0 0 chr21 20517304 20517339 -14390231 + (CA)n Simple_repeat Simple_repeat 1 35 0 1222 300 58 19 chr21 20517339 20517586 -14389984 + L1MC1 LINE L1 5602 5883 -1925 1977 148 0 23 chr21 20517589 20517893 -14389677 + AluJb SINE Alu 1 297 -15 4499 149 18 9 chr21 20518381 20519776 -14387794 + L1PB1 LINE L1 4391 5791 -360 408 87 38 71 chr21 20519782 20519965 -14387605 + (TA)n Simple_repeat Simple_repeat 2 178 0 319 174 17 47 chr21 20519999 20520252 -14387318 + (TA)n Simple_repeat Simple_repeat 1 245 0 2406 79 41 41 chr21 20520257 20520625 -14386945 + L1PB1 LINE L1 5782 6149 -2 761 272 35 8 chr21 20520762 20521023 -14386547 + L1MC4a LINE L1 6497 6764 -1044 1377 114 35 0 chr21 20521025 20521227 -14386343 + MER30 DNA MER1_type 1 209 -21 1972 139 0 24 chr21 20521302 20521596 -14385974 - AluSx SINE Alu -25 287 1 1913 144 18 24 chr21 20521649 20521990 -14385580 + L1MC1 LINE L1 5994 6332 -1 1013 223 65 53 chr21 20521996 20522445 -14385125 + L1MC5 LINE L1 7473 7926 -35 1981 125 0 0 chr21 20522523 20522787 -14384783 - AluSx SINE Alu -18 294 31 1659 192 68 42 chr21 20522977 20523496 -14384074 + MLT1D LTR MaLR 7 542 0 802 185 38 39 chr21 20524124 20524164 -14383406 - L1ME LINE L1 -679 5483 5444 2375 100 0 3 chr21 20524164 20524473 -14383097 - AluY SINE Alu -1 310 3 802 185 38 39 chr21 20524473 20524688 -14382882 - L1ME LINE L1 -718 5444 5217 786 225 54 12 chr21 20524767 20525007 -14382563 - L1ME LINE L1 -1506 4640 4391 283 272 0 0 chr21 20525045 20525126 -14382444 - L1ME LINE L1 -3446 2700 2620 1840 171 9 9 chr21 20525126 20525447 -14382123 - MER50 LTR ERV1 -14 720 400 1495 132 16 8 chr21 20525447 20525689 -14381881 - MER50 LTR ERV1 -490 244 1 1939 150 49 42 chr21 20525689 20525754 -14381816 - MLT1B LTR MaLR -1 389 326 2227 126 0 0 chr21 20525754 20526078 -14381492 + AluSx SINE Alu 1 312 0 1939 150 49 42 chr21 20526078 20526398 -14381172 - MLT1B LTR MaLR -64 326 1 942 228 59 129 chr21 20526503 20526532 -14381038 + MER21B LTR ERV1 1 30 -833 3213 151 21 53 chr21 20526532 20527153 -14380417 - MER7C DNA MER2_type -1 601 1 942 228 59 129 chr21 20527153 20527698 -14379872 + MER21B LTR ERV1 30 535 -328 317 243 90 27 chr21 20527701 20527812 -14379758 + MER21B LTR ERV1 695 812 -51 1826 132 28 21 chr21 20529380 20529690 -14377880 - AluJo SINE Alu 0 312 2 751 196 75 46 chr21 20530179 20530352 -14377218 + AluJo SINE Alu 2 179 -133 225 80 68 57 chr21 20531090 20531178 -14376392 + (CATAT)n Simple_repeat Simple_repeat 2 90 0 1154 65 0 7 chr21 20531183 20531322 -14376248 - AluY SINE Alu -173 138 1 1057 163 60 0 chr21 20531361 20531576 -14375994 + MSTA LTR MaLR 103 330 -98 499 304 56 50 chr21 20532198 20532557 -14375013 - MARNA DNA Mariner -197 389 29 469 325 73 44 chr21 20532581 20533034 -14374536 - MLT1J LTR MaLR -45 466 1 2330 102 3 13 chr21 20533040 20533343 -14374227 - AluSx SINE Alu -12 300 1 278 175 21 41 chr21 20533603 20533700 -14373870 + GA-rich Low_complexity Low_complexity 1 95 0 2131 115 0 0 chr21 20534395 20534735 -14372835 + AluSc SINE Alu 1 340 0 1735 180 13 16 chr21 20535023 20535334 -14372236 - AluJo SINE Alu -2 310 1 1182 142 114 0 chr21 20536860 20537071 -14370499 - MER46A DNA MER2_type 0 236 2 1861 143 24 88 chr21 20537074 20537353 -14370217 + L1MB8 LINE L1 5786 6081 -97 2456 88 0 7 chr21 20537353 20537658 -14369912 + AluSx SINE Alu 1 303 -9 1861 143 24 88 chr21 20537658 20537670 -14369900 + L1MB8 LINE L1 6081 6092 -86 1748 129 82 18 chr21 20537670 20537950 -14369620 + AluJo SINE Alu 1 298 -14 1861 143 24 88 chr21 20537950 20538077 -14369493 + L1MB8 LINE L1 6092 6178 0 2178 123 3 16 chr21 20538151 20538468 -14369102 + AluSq SINE Alu 1 313 0 785 116 14 68 chr21 20539081 20539227 -14368343 - MSTB1 LTR MaLR -1 431 294 433 182 57 0 chr21 20539270 20539358 -14368212 - MSTB1 LTR MaLR -334 94 2 1808 103 4 4 chr21 20539510 20539752 -14367818 - AluSg SINE Alu -11 299 58 1649 108 0 0 chr21 20539753 20539967 -14367603 + AluSq SINE Alu 33 246 -67 215 196 134 82 chr21 20540501 20540598 -14366972 - MIR SINE MIR -32 230 129 2239 122 0 0 chr21 20540700 20541004 -14366566 - AluSc SINE Alu -4 305 2 2582 91 37 0 chr21 20541030 20541381 -14366189 - THE1B LTR MaLR 0 364 1 2333 111 0 0 chr21 20544244 20544542 -14363028 - AluSx SINE Alu -11 301 4 27 62 0 0 chr21 20545345 20545393 -14362177 + AT_rich Low_complexity Low_complexity 1 48 0 1727 140 89 0 chr21 20545393 20545650 -14361920 - AluJb SINE Alu -31 281 2 204 273 0 0 chr21 20546112 20546178 -14361392 + (CA)n Simple_repeat Simple_repeat 1 66 0 232 235 136 61 chr21 20547270 20547402 -14360168 - MIR SINE MIR -19 243 102 316 307 32 42 chr21 20547454 20547601 -14359969 - MIR SINE MIR -62 146 24 214 191 0 0 chr21 20547652 20547694 -14359876 + GA-rich Low_complexity Low_complexity 1 42 0 273 318 93 46 chr21 20553326 20553477 -14354093 + MIR3 SINE MIR 44 201 -7 259 210 70 112 chr21 20553699 20553750 -14353820 - MIR SINE MIR -19 243 191 2053 118 35 0 chr21 20553750 20554037 -14353533 + AluJb SINE Alu 1 297 -15 259 210 70 112 chr21 20554037 20554128 -14353442 - MIR SINE MIR -71 191 107 626 237 138 65 chr21 20556442 20556565 -14351005 + L1MEc LINE L1 953 1066 -5149 1889 139 175 11 chr21 20556565 20556931 -14350639 + MSTA LTR MaLR 1 426 -2 626 237 138 65 chr21 20556931 20557502 -14350068 + L1MEc LINE L1 1066 1649 -4566 1218 240 31 3 chr21 20557504 20557924 -14349646 + L1MEc LINE L1 1617 2076 -4170 760 167 32 6 chr21 20557985 20558141 -14349429 + L1MEc LINE L1 2239 2398 -3998 1974 128 3 0 chr21 20558209 20558497 -14349073 - AluSx SINE Alu -23 289 1 1347 164 42 15 chr21 20559074 20559336 -14348234 + AluJo SINE Alu 23 291 -21 336 302 26 0 chr21 20559878 20559994 -14347576 + L1ME3A LINE L1 5824 5942 -228 207 0 0 0 chr21 20560257 20560280 -14347290 + (T)n Simple_repeat Simple_repeat 1 23 0 2434 250 50 22 chr21 20561431 20562115 -14345455 + L1ME LINE L1 17 719 -5821 1226 262 31 14 chr21 20562122 20562538 -14345032 + L1ME LINE L1 5281 5703 -837 192 97 0 0 chr21 20562566 20562597 -14344973 + (A)n Simple_repeat Simple_repeat 1 31 0 1052 106 25 40 chr21 20562636 20562834 -14344736 + L1MC/D LINE L1 5272 5466 -893 23 33 0 0 chr21 20563146 20563176 -14344394 + AT_rich Low_complexity Low_complexity 1 30 0 1425 122 81 8 chr21 20563531 20563777 -14343793 - Tigger4(Zombi) DNA MER2_type 0 2731 2468 208 216 39 0 chr21 20564559 20564610 -14342960 + (ATGGTG)n Simple_repeat Simple_repeat 6 58 0 866 232 5 34 chr21 20564633 20564840 -14342730 - MIR SINE MIR -39 223 23 292 280 0 0 chr21 20566677 20566752 -14340818 + (CA)n Simple_repeat Simple_repeat 2 76 0 772 122 81 0 chr21 20567758 20567881 -14339689 - FLAM_C SINE Alu 0 133 1 1999 127 3 13 chr21 20569045 20569352 -14338218 - AluSx SINE Alu -8 304 1 2489 64 0 3 chr21 20569537 20569849 -14337721 - AluY SINE Alu 0 311 1 2089 119 0 3 chr21 20570388 20570690 -14336880 + AluSq SINE Alu 1 301 -12 243 190 0 0 chr21 20570811 20570869 -14336701 + GA-rich Low_complexity Low_complexity 1 58 0 239 322 55 20 chr21 20570895 20571041 -14336529 + L1ME LINE L1 6129 6279 -279 246 280 40 56 chr21 20571646 20571771 -14335799 + MIR3 SINE MIR 78 200 -8 1132 128 0 43 chr21 20572524 20572711 -14334859 - 7SLRNA srpRNA srpRNA -1 319 141 337 127 67 68 chr21 20572743 20572829 -14334741 - AluSg/x SINE Alu -108 194 125 308 265 92 85 chr21 20572879 20573324 -14334246 + L1ME4a LINE L1 5671 6118 -3 868 226 55 60 chr21 20573342 20573723 -14333847 + L1ME2 LINE L1 5759 6162 0 401 331 38 22 chr21 20573797 20574117 -14333453 + L1MEc LINE L1 1293 1617 -4779 1088 186 57 54 chr21 20574116 20574449 -14333121 + L1M4 LINE L1 3621 3954 -2192 529 156 31 22 chr21 20575066 20575223 -14332347 - MER20 DNA MER1_type 0 219 4 2528 145 19 9 chr21 20575987 20576414 -14331156 + MSTB1 LTR MaLR 1 431 -1 1901 95 0 86 chr21 20579871 20580198 -14327372 + AluSq SINE Alu 1 299 -14 1544 152 4 15 chr21 20580209 20580479 -14327091 + AluJb SINE Alu 1 267 -45 527 227 147 0 chr21 20581598 20581761 -14325809 + MER5A DNA MER1_type 3 189 0 298 194 10 12 chr21 20581903 20582003 -14325567 + MIR SINE MIR 28 147 -61 386 260 45 70 chr21 20583384 20583601 -14323969 + MLT1J1 LTR MaLR 238 406 -3 935 245 12 48 chr21 20584470 20584719 -14322851 + MIR SINE MIR 2 241 -21 1905 157 0 7 chr21 20585669 20585969 -14321601 - AluSx SINE Alu -14 298 1 1276 212 0 36 chr21 20586157 20586464 -14321106 + AluJb SINE Alu 1 296 -16 32 57 0 0 chr21 20587737 20587790 -14319780 + AT_rich Low_complexity Low_complexity 1 53 0 1997 133 0 3 chr21 20587804 20588105 -14319465 + AluSx SINE Alu 1 300 -12 427 289 16 0 chr21 20588228 20588349 -14319221 - MIR SINE MIR -32 230 108 21 36 0 0 chr21 20589534 20589562 -14318008 + AT_rich Low_complexity Low_complexity 1 28 0 527 78 13 0 chr21 20591188 20591265 -14316305 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 354 292 88 62 chr21 20591430 20591622 -14315948 + MIR SINE MIR 46 242 -20 2109 108 0 7 chr21 20592269 20592566 -14315004 - AluSx SINE Alu -17 295 1 1494 182 25 3 chr21 20593728 20594014 -14313556 - AluJo SINE Alu -20 292 1 284 130 0 0 chr21 20594016 20594062 -14313508 - FLAM_A SINE Alu 0 133 88 1782 161 0 31 chr21 20595221 20595543 -14312027 + AluJo SINE Alu 1 312 0 402 278 21 62 chr21 20597196 20597340 -14310230 - MIR SINE MIR -79 183 46 2161 90 3 3 chr21 20598137 20598426 -14309144 - AluSx SINE Alu -23 289 1 1732 133 3 68 chr21 20599120 20599429 -14308141 + AluSx SINE Alu 1 289 -23 986 146 32 0 chr21 20599523 20599681 -14307889 - FRAM SINE Alu -12 164 2 614 182 0 0 chr21 20599952 20600062 -14307508 + FRAM SINE Alu 65 174 -2 435 197 128 26 chr21 20600812 20600929 -14306641 + MER58B DNA MER1_type 213 341 0 416 270 92 37 chr21 20600950 20601235 -14306335 - L2 LINE L2 -20 3293 2971 188 35 35 0 chr21 20603297 20603326 -14304244 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr21 20603487 20603509 -14304061 + AT_rich Low_complexity Low_complexity 1 22 0 524 258 75 71 chr21 20603916 20604116 -14303454 - L1ME4a LINE L1 -2 6119 5852 486 281 31 10 chr21 20604127 20604321 -14303249 - L1MC1 LINE L1 -354 5810 5677 267 299 41 10 chr21 20604371 20604468 -14303102 + MER5A DNA MER1_type 68 167 -22 1097 188 48 0 chr21 20604696 20604903 -14302667 - MER20 DNA MER1_type -1 218 2 1562 180 0 38 chr21 20605721 20606061 -14301509 + AluJo SINE Alu 1 312 0 329 290 164 30 chr21 20606457 20606700 -14300870 - L1ME4a LINE L1 -13 6108 5824 1607 174 14 7 chr21 20606700 20606870 -14300700 - AluJb SINE Alu -16 296 122 243 0 0 0 chr21 20606870 20606897 -14300673 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1607 174 14 7 chr21 20606897 20607020 -14300550 - AluJb SINE Alu -190 122 1 329 290 164 30 chr21 20607020 20607045 -14300525 - L1ME4a LINE L1 -297 5824 5804 352 267 183 0 chr21 20607107 20607227 -14300343 - L1ME4a LINE L1 -388 5733 5592 700 260 52 31 chr21 20609619 20609766 -14297804 - MIR SINE MIR -9 253 100 2046 101 39 0 chr21 20609766 20610052 -14297518 + AluSx SINE Alu 1 297 -15 700 260 52 31 chr21 20610052 20610096 -14297474 - MIR SINE MIR -162 100 58 709 178 109 78 chr21 20611563 20611884 -14295686 + L1MC5 LINE L1 7473 7803 -158 412 260 16 24 chr21 20614008 20614135 -14293435 - L2 LINE L2 -20 3293 3168 2455 74 0 0 chr21 20614758 20615096 -14292474 + AluY SINE Alu 1 338 0 1413 224 23 40 chr21 20615876 20615928 -14291642 + MLT1B LTR MaLR 1 52 -338 2243 107 10 0 chr21 20615928 20616237 -14291333 + AluSx SINE Alu 1 312 0 1413 224 23 40 chr21 20616237 20616581 -14290989 + MLT1B LTR MaLR 52 390 0 612 236 84 68 chr21 20616774 20616965 -14290605 - MIR SINE MIR -48 214 21 836 103 0 0 chr21 20617384 20617500 -14290070 + AluSc SINE Alu 188 303 -6 623 317 27 9 chr21 20618190 20618411 -14289159 + MIR SINE MIR 20 244 -18 184 281 31 31 chr21 20618539 20618603 -14288967 - L2 LINE L2 -3 3269 3206 333 308 66 80 chr21 20618916 20619205 -14288365 - L2 LINE L2 -1 3312 3028 538 346 44 36 chr21 20619294 20619655 -14287915 - L2 LINE L2 -436 2878 2515 2112 31 12 0 chr21 20620415 20620693 -14286877 - L1P LINE L1 -730 5421 5142 6455 25 3 1 chr21 20620693 20621438 -14286132 + L1PA4 LINE L1 5408 6155 0 1640 170 0 42 chr21 20621789 20622095 -14285475 + AluJo SINE Alu 1 293 -19 241 321 0 29 chr21 20623064 20623201 -14284369 + G-rich Low_complexity Low_complexity 5 137 0 217 200 73 0 chr21 20624568 20624623 -14282947 + MIR SINE MIR 71 129 -133 288 272 37 12 chr21 20624635 20624716 -14282854 - MIR SINE MIR -148 114 32 712 147 32 51 chr21 20625120 20625277 -14282293 - MLT1A1 LTR MaLR -211 154 1 726 240 71 42 chr21 20625569 20625877 -14281693 + L1 LINE L1 3851 4167 -1979 575 318 61 49 chr21 20625921 20626020 -14281550 + L1 LINE L1 4274 4370 -1776 1391 174 64 24 chr21 20626020 20626318 -14281252 + AluJo SINE Alu 1 310 -2 575 318 61 49 chr21 20626318 20626545 -14281025 + L1 LINE L1 4370 4604 -1542 301 301 37 52 chr21 20626612 20626707 -14280863 + L1 LINE L1 4703 4798 -1348 2059 95 3 7 chr21 20626707 20627041 -14280529 + AluSc SINE Alu 1 333 0 301 301 37 52 chr21 20627041 20627080 -14280490 + L1 LINE L1 4798 4836 -1310 3655 222 60 58 chr21 20627087 20627478 -14280092 + L1MC3 LINE L1 6406 6795 -994 2026 146 0 3 chr21 20627478 20627787 -14279783 + AluSx SINE Alu 5 312 0 3655 222 60 58 chr21 20627787 20628095 -14279475 + L1MC3 LINE L1 6795 7101 -688 770 167 0 24 chr21 20628095 20628221 -14279349 + AluJo SINE Alu 3 125 -177 3655 222 60 58 chr21 20628221 20628982 -14278588 + L1MC3 LINE L1 7101 7779 -10 2068 145 0 0 chr21 20628987 20629332 -14278238 + AluSx SINE Alu 1 345 0 614 179 125 0 chr21 20629341 20629382 -14278188 - L1MB1 LINE L1 -141 6039 6004 375 169 0 13 chr21 20629382 20629459 -14278111 - L1MA10 LINE L1 -2 6332 6257 614 179 125 0 chr21 20629459 20629570 -14278000 - L1MB1 LINE L1 -176 6004 5869 1177 170 4 22 chr21 20629571 20629800 -14277770 + L1MB1 LINE L1 5646 5870 -319 379 204 88 26 chr21 20629852 20629965 -14277605 + MLT1H LTR MaLR 1 120 -429 2049 178 80 8 chr21 20630419 20630806 -14276764 + MSTA LTR MaLR 14 428 0 225 231 77 0 chr21 20630885 20630950 -14276620 - L2 LINE L2 -412 2901 2832 666 233 60 112 chr21 20631019 20631181 -14276389 + MER119 DNA MER1_type 3 149 -434 2037 107 3 10 chr21 20631181 20631480 -14276090 + AluSx SINE Alu 1 297 -15 666 233 60 112 chr21 20631480 20631566 -14276004 + MER119 DNA MER1_type 149 238 -345 960 171 11 0 chr21 20631566 20631742 -14275828 + AluJo SINE Alu 133 310 -2 1231 226 38 18 chr21 20631743 20631888 -14275682 + MER119 DNA MER1_type 236 377 -206 1795 127 47 7 chr21 20631888 20632187 -14275383 + AluSx SINE Alu 1 311 -1 1231 226 38 18 chr21 20632187 20632382 -14275188 + MER119 DNA MER1_type 377 583 0 240 35 0 0 chr21 20632442 20632471 -14275099 + (T)n Simple_repeat Simple_repeat 1 29 0 2850 123 50 15 chr21 20632521 20632785 -14274785 + L1MB3 LINE L1 5684 5974 -209 2257 97 3 0 chr21 20632785 20633095 -14274475 + AluSp SINE Alu 1 311 -2 2850 123 50 15 chr21 20633095 20633310 -14274260 + L1MB3 LINE L1 5974 6180 -3 2349 122 32 37 chr21 20633652 20634011 -14273559 + L1MB3 LINE L1 5775 6133 -50 2012 125 3 0 chr21 20634011 20634306 -14273264 + AluSx SINE Alu 1 296 -16 2349 122 32 37 chr21 20634306 20634354 -14273216 + L1MB3 LINE L1 6133 6180 -3 392 198 0 0 chr21 20634354 20634435 -14273135 + (TA)n Simple_repeat Simple_repeat 1 81 0 270 0 0 0 chr21 20634485 20634515 -14273055 + (TG)n Simple_repeat Simple_repeat 1 30 0 2825 102 19 69 chr21 20634806 20634855 -14272715 - MER1A DNA MER1_type -2173 529 479 1814 134 48 0 chr21 20634855 20635145 -14272425 - AluSx SINE Alu -3 309 6 2825 102 19 69 chr21 20635145 20635558 -14272012 - MER1A DNA MER1_type -2223 479 90 1832 134 0 32 chr21 20635677 20635990 -14271580 + AluJb SINE Alu 8 310 -2 2246 119 0 0 chr21 20636117 20636429 -14271141 - AluSx SINE Alu 0 312 1 1750 135 7 30 chr21 20636959 20637262 -14270308 - AluSx SINE Alu -16 296 1 313 318 99 13 chr21 20637481 20637632 -14269938 - MIR3 SINE MIR -5 203 40 2168 103 3 0 chr21 20637746 20638047 -14269523 + AluSg SINE Alu 1 302 -8 1753 129 0 72 chr21 20638419 20638737 -14268833 + AluSx SINE Alu 1 295 -17 793 196 38 12 chr21 20639136 20639304 -14268266 + MER45A DNA AcHobo 3 175 -3 244 86 0 0 chr21 20639308 20639343 -14268227 + MIR SINE MIR 153 187 -75 2022 109 3 7 chr21 20639976 20640270 -14267300 - AluSx SINE Alu -19 293 1 543 214 71 29 chr21 20640270 20640410 -14267160 - L1M3 LINE L1 -395 5785 5640 297 326 101 22 chr21 20640427 20640565 -14267005 + L2 LINE L2 2658 2806 -508 201 306 126 9 chr21 20640598 20640709 -14266861 + L2 LINE L2 2851 2974 -298 498 167 115 0 chr21 20640925 20641021 -14266549 - L1M3 LINE L1 -412 5768 5662 185 271 73 62 chr21 20641129 20641225 -14266345 + L2 LINE L2 3175 3271 -1 223 242 108 25 chr21 20642129 20642249 -14265321 + MIR SINE MIR 20 149 -113 23 0 0 0 chr21 20642350 20642373 -14265197 + GC_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr21 20646264 20646286 -14261284 + (TG)n Simple_repeat Simple_repeat 1 22 0 2262 103 3 0 chr21 20646348 20646686 -14260884 - AluSq SINE Alu 0 339 1 852 224 24 0 chr21 20647018 20647188 -14260382 - FAM SINE Alu -1 174 1 2304 174 8 0 chr21 20647256 20647636 -14259934 - MLT1B LTR MaLR 0 390 8 625 261 17 34 chr21 20647827 20648003 -14259567 - MER5B DNA MER1_type 0 178 6 450 266 89 13 chr21 20648589 20648747 -14258823 - MIR SINE MIR -63 199 30 305 102 0 34 chr21 20649186 20649245 -14258325 - L1PA14 LINE L1 -3 6158 6102 2027 107 0 0 chr21 20649490 20649762 -14257808 + AluSx SINE Alu 1 272 -40 250 24 71 0 chr21 20649777 20649819 -14257751 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1479 117 5 0 chr21 20650231 20650445 -14257125 + AluSg/x SINE Alu 84 298 -12 1790 136 0 30 chr21 20650450 20650751 -14256819 - AluJb SINE Alu -20 292 1 455 221 97 41 chr21 20650760 20650905 -14256665 - MIR SINE MIR -13 249 97 339 184 26 0 chr21 20651144 20651220 -14256350 + L1MEd LINE L1 39 116 -6003 2144 110 0 3 chr21 20651821 20652121 -14255449 + AluSx SINE Alu 3 301 -11 881 243 69 76 chr21 20652155 20652665 -14254905 + L1MEd LINE L1 866 1406 -4862 2342 109 13 0 chr21 20652850 20653154 -14254416 + AluSx SINE Alu 1 308 -4 268 24 24 24 chr21 20654888 20654930 -14252640 + (ATG)n Simple_repeat Simple_repeat 2 43 0 1546 148 49 67 chr21 20654935 20655090 -14252480 - AluJo SINE Alu -33 279 130 2257 106 0 10 chr21 20655090 20655208 -14252362 + AluSx SINE Alu 5 123 -189 198 0 0 0 chr21 20655208 20655230 -14252340 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2257 106 0 10 chr21 20655230 20655413 -14252157 + AluSx SINE Alu 123 303 -9 1546 148 49 67 chr21 20655413 20655541 -14252029 - AluJo SINE Alu -182 130 1 497 181 95 9 chr21 20655849 20655954 -14251616 + MER20 DNA MER1_type 106 219 0 2360 102 0 0 chr21 20657490 20657785 -14249785 + AluSc SINE Alu 1 295 -14 840 156 0 15 chr21 20657793 20657928 -14249642 + FLAM_C SINE Alu 1 133 0 1820 115 3 67 chr21 20659064 20659398 -14248172 - AluSx SINE Alu 0 312 1 2150 146 0 0 chr21 20659403 20659711 -14247859 - AluSq SINE Alu -5 308 1 22 0 0 0 chr21 20659715 20659737 -14247833 + AT_rich Low_complexity Low_complexity 1 22 0 1457 178 28 19 chr21 20659779 20660100 -14247470 - MER33 DNA MER1_type 0 324 1 2533 106 16 27 chr21 20660536 20660748 -14246822 - THE1B LTR MaLR 0 364 156 2123 130 0 0 chr21 20660748 20661041 -14246529 + AluSx SINE Alu 1 293 -19 2533 106 16 27 chr21 20661041 20661196 -14246374 - THE1B LTR MaLR -208 156 1 441 269 32 51 chr21 20661500 20661656 -14245914 - MER5B DNA MER1_type -16 162 10 26 50 0 0 chr21 20661684 20661724 -14245846 + AT_rich Low_complexity Low_complexity 1 40 0 1964 224 51 2 chr21 20661724 20662326 -14245244 - L1MC4 LINE L1 -17 8025 7353 1939 140 0 36 chr21 20662777 20663085 -14244485 - AluJo SINE Alu -11 301 5 1021 230 84 80 chr21 20663757 20663934 -14243636 + MLT1C LTR MaLR 1 176 -291 834 127 8 30 chr21 20663934 20664068 -14243502 + AluJo/FLAM SINE Alu 1 131 -171 2166 115 3 7 chr21 20664070 20664365 -14243205 + AluSx SINE Alu 1 294 -18 2534 42 0 0 chr21 20664367 20664690 -14242880 + AluY SINE Alu 1 323 0 1021 230 84 80 chr21 20664690 20664970 -14242600 + MLT1C LTR MaLR 176 467 0 332 222 26 124 chr21 20664970 20665123 -14242447 - MIR SINE MIR -40 222 85 730 179 0 50 chr21 20665270 20665410 -14242160 - FLAM_A SINE Alu 0 133 1 3957 209 57 36 chr21 20665729 20666097 -14241473 - MER45B DNA AcHobo -541 1040 681 2212 112 0 0 chr21 20666097 20666419 -14241151 - AluSg SINE Alu 0 322 1 3957 209 57 36 chr21 20666419 20666935 -14240635 - MER45B DNA AcHobo -900 681 128 2150 110 0 0 chr21 20666935 20667240 -14240330 + AluSx SINE Alu 1 305 0 3957 209 57 36 chr21 20667240 20667360 -14240210 - MER45B DNA AcHobo -1453 128 12 2375 97 33 0 chr21 20668272 20668572 -14238998 + AluSx SINE Alu 1 310 -2 749 261 58 13 chr21 20668573 20668799 -14238771 + MER82 DNA MER2_type 418 653 0 2197 105 0 14 chr21 20669011 20669306 -14238264 + AluSx SINE Alu 1 291 -21 2256 112 0 3 chr21 20670876 20671171 -14236399 + AluSp SINE Alu 1 294 -19 292 296 143 33 chr21 20671198 20671666 -14235904 - L2 LINE L2 -32 3281 2718 676 226 49 84 chr21 20671902 20672189 -14235381 - MLT1J2 LTR MaLR -132 318 42 21 0 0 0 chr21 20672717 20672738 -14234832 + AT_rich Low_complexity Low_complexity 1 21 0 505 102 0 23 chr21 20673021 20673109 -14234461 + (GGGA)n Simple_repeat Simple_repeat 2 87 0 2067 114 30 10 chr21 20673318 20673617 -14233953 + AluSq SINE Alu 1 305 -8 1879 175 6 9 chr21 20673771 20674102 -14233468 - MER21B-int LTR ERV1 -3861 330 1 351 0 0 0 chr21 20674111 20674150 -14233420 + (CA)n Simple_repeat Simple_repeat 2 40 0 4170 189 48 11 chr21 20674154 20674973 -14232597 - MER21B LTR ERV1 -14 849 1 2048 148 83 55 chr21 20675039 20675630 -14231940 - MER4A LTR ERV1 0 465 1 2218 82 35 0 chr21 20676019 20676301 -14231269 + AluSx SINE Alu 1 292 -20 257 353 83 4 chr21 20676821 20677073 -14230497 + L2 LINE L2 725 996 -2318 1611 119 123 0 chr21 20677175 20677426 -14230144 + AluSx SINE Alu 1 282 -30 634 96 17 61 chr21 20677604 20677719 -14229851 - MLT1D LTR MaLR -395 110 1 311 311 24 30 chr21 20677733 20677753 -14229817 + L2 LINE L2 1802 1821 -1493 2276 120 3 0 chr21 20677753 20678062 -14229508 - AluSp SINE Alu -3 310 1 311 311 24 30 chr21 20678062 20678205 -14229365 + L2 LINE L2 1821 1964 -1350 425 212 81 69 chr21 20678438 20678598 -14228972 - L1ME3A LINE L1 -40 6130 5969 254 151 0 0 chr21 20678627 20678680 -14228890 - L1MC1 LINE L1 -1 6332 6280 2058 131 47 7 chr21 20678684 20679126 -14228444 + AluSg SINE Alu 1 454 0 2768 159 6 31 chr21 20679126 20679648 -14227922 - L1MC1 LINE L1 -42 6291 5783 2208 128 0 3 chr21 20679667 20679980 -14227590 - AluSx SINE Alu 0 312 1 1371 186 127 31 chr21 20681604 20682009 -14225561 - MLT1C LTR MaLR -18 487 1 4173 167 28 40 chr21 20682371 20683166 -14224404 - LTR1 LTR ERV1 0 785 1 2473 82 0 0 chr21 20684006 20684299 -14223271 + AluSg SINE Alu 1 293 -17 1170 212 28 105 chr21 20685077 20685362 -14222208 - MSTD LTR MaLR 0 396 153 197 33 33 0 chr21 20685362 20685392 -14222178 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1170 212 28 105 chr21 20685392 20685535 -14222035 - MSTD LTR MaLR -243 153 1 2401 104 3 0 chr21 20685940 20686249 -14221321 - AluSq SINE Alu -3 310 1 255 133 0 0 chr21 20687924 20687969 -14219601 + (GA)n Simple_repeat Simple_repeat 2 46 0 2293 107 7 0 chr21 20688540 20688838 -14218732 - AluSp SINE Alu -13 300 1 272 314 0 0 chr21 20689194 20689312 -14218258 + (CA)n Simple_repeat Simple_repeat 1 118 0 2370 80 13 0 chr21 20689617 20689917 -14217653 + AluSp SINE Alu 1 304 -9 537 311 86 54 chr21 20690252 20690603 -14216967 + L2 LINE L2 2916 3277 -36 2217 118 3 0 chr21 20690814 20691103 -14216467 - AluSx SINE Alu -22 290 1 348 164 15 0 chr21 20691708 20691775 -14215795 - MER63 DNA MER1_type -325 737 44 1481 201 3 30 chr21 20692177 20692481 -14215089 + AluJo SINE Alu 17 312 0 321 197 0 0 chr21 20692488 20692549 -14215021 + MER97c DNA MER1_type? 115 175 -915 3595 119 0 6 chr21 20692599 20693113 -14214457 + MER9 LTR ERVK 1 511 0 596 75 0 12 chr21 20693178 20693258 -14214312 + MADE1 DNA Mariner 2 80 0 24 53 0 0 chr21 20693819 20693857 -14213713 + AT_rich Low_complexity Low_complexity 1 38 0 2199 122 0 3 chr21 20694597 20694892 -14212678 + AluSx SINE Alu 1 294 -18 1477 81 0 0 chr21 20695681 20695855 -14211715 - AluSq SINE Alu -139 174 1 934 243 36 18 chr21 20695878 20696158 -14211412 - L1MB8 LINE L1 -7 6171 5887 2531 64 3 0 chr21 20696196 20696494 -14211076 + AluY SINE Alu 1 299 -12 897 107 0 50 chr21 20696882 20697022 -14210548 - FLAM_C SINE Alu 0 133 1 880 200 14 57 chr21 20697030 20697240 -14210330 + AluJo SINE Alu 112 312 0 391 73 0 0 chr21 20697923 20697978 -14209592 - MLT2A1 LTR ERVL 0 444 390 308 175 0 0 chr21 20698028 20698085 -14209485 + MLT2A1 LTR ERVL 348 404 -40 2196 91 3 14 chr21 20698147 20698476 -14209094 + AluSg SINE Alu 1 326 0 2835 74 28 5 chr21 20698554 20698948 -14208622 - MLT2A1 LTR ERVL -41 403 1 726 262 103 73 chr21 20699117 20699514 -14208056 - L2 LINE L2 -1 3312 2904 2160 165 41 29 chr21 20699604 20700046 -14207524 - MLT2C2 LTR ERVL -17 447 1 2413 97 0 0 chr21 20700807 20701117 -14206453 - AluSx SINE Alu -2 310 1 2461 94 3 0 chr21 20701375 20701684 -14205886 - AluSx SINE Alu -2 310 1 2315 104 0 0 chr21 20701688 20701986 -14205584 - AluY SINE Alu -13 298 1 187 71 0 0 chr21 20702205 20702233 -14205337 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2216 105 0 3 chr21 20702233 20702518 -14205052 - AluSx SINE Alu -28 284 1 984 176 0 12 chr21 20702547 20702712 -14204858 + FRAM SINE Alu 2 164 -2 339 138 108 0 chr21 20703768 20703833 -14203737 - AluJ/FRAM SINE Alu -14 288 217 1456 149 58 17 chr21 20704031 20704272 -14203298 - AluJo SINE Alu -61 251 1 451 310 149 38 chr21 20704369 20704766 -14202804 + L2 LINE L2 2873 3313 0 261 0 0 0 chr21 20705399 20705428 -14202142 + (CAT)n Simple_repeat Simple_repeat 2 30 0 443 339 49 62 chr21 20705608 20705933 -14201637 - L1ME4a LINE L1 -225 5896 5576 459 0 0 0 chr21 20705938 20705989 -14201581 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 216 0 0 0 chr21 20706316 20706340 -14201230 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2175 99 3 0 chr21 20706418 20706722 -14200848 + AluSp SINE Alu 1 305 0 312 319 15 0 chr21 20707287 20707422 -14200148 - MLT1F1-int LTR MaLR -1233 138 2 549 237 95 24 chr21 20707436 20707738 -14199832 - MLT1F1 LTR MaLR -23 544 178 247 50 0 174 chr21 20707791 20707952 -14199618 + (TCCCC)n Simple_repeat Simple_repeat 1 133 0 756 134 0 0 chr21 20708162 20708274 -14199296 + MLT1B LTR MaLR 1 112 -278 2286 86 0 7 chr21 20708289 20708579 -14198991 - AluSx SINE Alu -24 288 1 2224 103 0 7 chr21 20709197 20709479 -14198091 + AluSx SINE Alu 1 280 -32 1139 133 0 23 chr21 20709733 20709906 -14197664 + AluJo SINE Alu 7 175 -137 700 308 53 12 chr21 20709988 20710235 -14197335 + L1ME4a LINE L1 5517 5773 -348 853 156 0 0 chr21 20710247 20710375 -14197195 + AluJo SINE Alu 171 298 -14 1217 139 0 113 chr21 20710502 20710732 -14196838 + AluJb SINE Alu 85 288 -24 2300 110 7 0 chr21 20710740 20711048 -14196522 + AluSq SINE Alu 2 311 -2 348 320 96 6 chr21 20711081 20711237 -14196333 + L1ME4a LINE L1 5952 6121 0 2045 141 10 10 chr21 20712914 20713218 -14194352 - AluJo SINE Alu -8 304 1 266 200 0 0 chr21 20713808 20713858 -14193712 - L2 LINE L2 0 3313 3264 311 109 0 0 chr21 20713919 20713965 -14193605 - 5S rRNA rRNA -75 46 1 333 0 0 0 chr21 20714022 20714059 -14193511 + (TG)n Simple_repeat Simple_repeat 2 38 0 2282 104 0 3 chr21 20714320 20714619 -14192951 + AluSx SINE Alu 1 298 -14 1931 103 78 4 chr21 20715251 20715522 -14192048 - AluSx SINE Alu -21 291 1 190 339 37 18 chr21 20715772 20715881 -14191689 + MIR SINE MIR 10 120 -142 568 179 127 64 chr21 20715883 20716056 -14191514 - MLT1J2 LTR MaLR 0 450 267 2367 105 0 3 chr21 20716179 20716484 -14191086 - AluSq SINE Alu -9 304 1 1625 207 75 80 chr21 20717262 20717504 -14190066 + MER21B LTR ERV1 148 390 -473 1986 131 28 3 chr21 20717504 20717794 -14189776 + AluSx SINE Alu 1 297 -15 1625 207 75 80 chr21 20717794 20718111 -14189459 + MER21B LTR ERV1 390 704 -159 735 168 13 0 chr21 20718156 20718305 -14189265 + L1 LINE L1 5219 5369 -777 5055 152 20 21 chr21 20718353 20718647 -14188923 - L1M2 LINE L1 -650 5662 5369 2419 84 3 0 chr21 20718647 20718944 -14188626 - AluSx SINE Alu -14 298 1 5055 152 20 21 chr21 20718944 20719924 -14187646 - L1M2 LINE L1 -943 5369 4381 1868 105 0 8 chr21 20719924 20720163 -14187407 - AluSx SINE Alu -75 237 1 1917 114 17 0 chr21 20720163 20720462 -14187108 - L1MB2 LINE L1 -38 6133 5830 913 121 7 4 chr21 20720604 20720756 -14186814 - L1P5 LINE L1 -330 5821 5674 2324 83 23 0 chr21 20721466 20721766 -14185804 + AluSx SINE Alu 1 307 -5 397 95 16 16 chr21 20722088 20722151 -14185419 - MER45A DNA AcHobo -17 161 99 190 373 36 9 chr21 20722782 20722892 -14184678 + L2 LINE L2 2354 2466 -848 225 250 162 0 chr21 20722954 20723022 -14184548 + MIR SINE MIR 63 141 -121 2204 110 0 0 chr21 20723830 20724159 -14183411 - AluSx SINE Alu 0 329 1 202 347 0 28 chr21 20724164 20724236 -14183334 + L2 LINE L2 3234 3303 -10 428 284 119 11 chr21 20724296 20724472 -14183098 - L2 LINE L2 0 3313 3119 487 106 11 53 chr21 20724507 20724560 -14183010 - MER45A DNA AcHobo -1430 151 102 2287 105 3 0 chr21 20724560 20724856 -14182714 + AluSx SINE Alu 1 297 -15 487 106 11 53 chr21 20724856 20724896 -14182674 - MER45A DNA AcHobo -1479 102 62 2089 134 10 35 chr21 20726034 20726428 -14181142 - L1MB8 LINE L1 -6 6172 5789 21 36 0 0 chr21 20727510 20727538 -14180032 + AT_rich Low_complexity Low_complexity 1 28 0 1960 113 66 63 chr21 20727711 20728074 -14179496 - THE1B LTR MaLR 0 364 1 2130 106 31 3 chr21 20728224 20728517 -14179053 + AluSq SINE Alu 1 301 -12 845 107 0 0 chr21 20730250 20730362 -14177208 - AluSx SINE Alu -5 304 193 1110 122 0 7 chr21 20730363 20730510 -14177060 - AluSx SINE Alu -167 146 1 1360 200 33 67 chr21 20730515 20730877 -14176693 - L1MB8 LINE L1 -4 6174 5826 2002 142 3 7 chr21 20730877 20731172 -14176398 - AluSx SINE Alu -18 294 1 1360 200 33 67 chr21 20731172 20731229 -14176341 - L1MB8 LINE L1 -352 5826 5769 960 126 11 6 chr21 20731986 20732161 -14175409 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 2284 92 20 0 chr21 20732163 20732458 -14175112 - AluSq SINE Alu -12 301 1 854 139 0 0 chr21 20732867 20732989 -14174581 - FLAM_C SINE Alu -21 122 1 2326 107 0 3 chr21 20733323 20733633 -14173937 + AluSq SINE Alu 1 309 -4 2863 83 3 0 chr21 20734872 20735233 -14172337 - THE1B LTR MaLR 0 364 3 884 234 30 54 chr21 20735620 20735915 -14171655 - MLT1A2 LTR MaLR 0 374 87 346 384 28 9 chr21 20736156 20736367 -14171203 + L2 LINE L2 3099 3313 0 672 242 1 0 chr21 20737412 20738113 -14169457 + (TG)n Simple_repeat Simple_repeat 1 702 0 191 258 61 45 chr21 20739224 20739290 -14168280 + MIR3 SINE MIR 137 203 -5 470 264 58 8 chr21 20739603 20739724 -14167846 - L2 LINE L2 -1 3312 3186 325 325 59 35 chr21 20739869 20740072 -14167498 - L2 LINE L2 -337 2977 2770 268 97 194 48 chr21 20740073 20740103 -14167467 + MADE1 DNA Mariner 10 34 -46 2283 103 0 26 chr21 20740103 20740414 -14167156 - AluSx SINE Alu -9 303 1 268 97 194 48 chr21 20740414 20740445 -14167125 + MADE1 DNA Mariner 34 80 0 1677 189 0 18 chr21 20740814 20741099 -14166471 + AluJo SINE Alu 3 282 -30 2369 92 6 19 chr21 20741193 20741509 -14166061 + AluSx SINE Alu 1 312 0 336 246 69 54 chr21 20741776 20742047 -14165523 + L1ME LINE L1 5555 5811 -355 240 165 6 112 chr21 20743047 20743217 -14164353 + (TATAA)n Simple_repeat Simple_repeat 1 152 0 2388 80 3 13 chr21 20743119 20743538 -14164032 - AluY SINE Alu 0 416 1 1743 177 53 13 chr21 20743600 20743899 -14163671 - AluJb SINE Alu 0 312 2 1904 152 17 48 chr21 20743920 20744275 -14163295 - MER2 DNA MER2_type 0 344 1 1168 161 39 17 chr21 20744405 20744635 -14162935 - MIR SINE MIR 0 262 28 591 191 66 0 chr21 20745500 20745636 -14161934 - MIR SINE MIR 0 262 118 1033 156 37 67 chr21 20745726 20745761 -14161809 - MER58B DNA MER1_type -2083 337 302 2211 105 7 7 chr21 20745761 20746055 -14161515 + AluSx SINE Alu 1 294 -18 1033 156 37 67 chr21 20746055 20746288 -14161282 - MER58B DNA MER1_type -2118 302 77 365 155 0 42 chr21 20746285 20746356 -14161214 + FLAM SINE Alu 63 130 -3 322 203 0 14 chr21 20746376 20746445 -14161125 - MER58B DNA MER1_type -249 92 25 389 149 0 15 chr21 20746466 20746533 -14161037 + MER58B DNA MER1_type 276 341 0 235 215 29 86 chr21 20746916 20747013 -14160557 - MIR SINE MIR -70 138 58 2566 162 46 7 chr21 20747197 20747655 -14159915 - L1MB5 LINE L1 -10 6164 5689 3137 109 43 39 chr21 20747974 20748111 -14159459 - MER75 DNA T2_type 0 514 379 2636 61 0 3 chr21 20748111 20748422 -14159148 + AluY SINE Alu 1 310 -1 3137 109 43 39 chr21 20748422 20748796 -14158774 - MER75 DNA T2_type -135 379 1 2120 128 7 3 chr21 20748831 20749127 -14158443 - AluSx SINE Alu -15 297 1 489 17 0 0 chr21 20749514 20749572 -14157998 + (CA)n Simple_repeat Simple_repeat 2 59 0 319 247 0 13 chr21 20750257 20750334 -14157236 + LTR16A1 LTR ERVL 51 126 -331 331 227 0 27 chr21 20750333 20750408 -14157162 + LTR16A1 LTR ERVL 355 427 -30 428 134 92 59 chr21 20750943 20751062 -14156508 + MIR SINE MIR 59 181 -81 898 143 37 12 chr21 20751778 20751939 -14155631 - MER3 DNA MER1_type 0 209 45 2003 126 14 0 chr21 20752706 20752992 -14154578 + AluSx SINE Alu 1 290 -22 2300 105 0 13 chr21 20753006 20753311 -14154259 + AluSq SINE Alu 1 301 -12 2235 125 0 0 chr21 20754971 20755268 -14152302 + AluSg SINE Alu 1 297 -13 2281 99 0 0 chr21 20756371 20756665 -14150905 - AluSc SINE Alu -15 294 1 2157 133 3 0 chr21 20757091 20757400 -14150170 + AluSx SINE Alu 3 312 0 7395 99 8 3 chr21 20757420 20758464 -14149106 + L1MA1 LINE L1 5254 6302 0 2115 130 7 3 chr21 20758468 20758767 -14148803 + AluSx SINE Alu 1 300 -12 1461 112 14 5 chr21 20758767 20758990 -14148580 + L1PB2 LINE L1 5927 6151 0 669 80 35 53 chr21 20759020 20759133 -14148437 + AluSg/x SINE Alu 198 308 -1 1596 230 81 7 chr21 20759406 20759836 -14147734 + MLT1C LTR MaLR 6 467 0 1153 214 31 21 chr21 20760017 20760384 -14147186 + MER63 DNA MER1_type 9 1050 -11 234 242 32 6 chr21 20760714 20760871 -14146699 + (CA)n Simple_repeat Simple_repeat 1 161 0 2339 104 48 20 chr21 20760874 20761228 -14146342 + THE1B LTR MaLR 1 364 0 1403 176 78 4 chr21 20761623 20761878 -14145692 + AluJb SINE Alu 1 274 -38 801 103 0 0 chr21 20761878 20761995 -14145575 + (GGAA)n Simple_repeat Simple_repeat 4 120 0 180 216 0 0 chr21 20763123 20763174 -14144396 + (TG)n Simple_repeat Simple_repeat 2 52 0 456 236 0 16 chr21 20763191 20763373 -14144197 + (TG)n Simple_repeat Simple_repeat 2 180 0 469 236 0 16 chr21 20763410 20763592 -14143978 + (TG)n Simple_repeat Simple_repeat 2 180 0 255 268 0 0 chr21 20763607 20763704 -14143866 + (TG)n Simple_repeat Simple_repeat 2 98 0 358 250 8 39 chr21 20763829 20763957 -14143613 + MIR SINE MIR 23 146 -116 468 0 0 0 chr21 20764544 20764596 -14142974 + (TA)n Simple_repeat Simple_repeat 1 52 0 2416 139 38 52 chr21 20764657 20764783 -14142787 + L1MB2 LINE L1 5700 5826 -345 2021 156 10 0 chr21 20764783 20765085 -14142485 + AluSx SINE Alu 1 305 -7 2416 139 38 52 chr21 20765085 20765171 -14142399 + L1MB2 LINE L1 5826 5912 -259 222 62 0 0 chr21 20765171 20765203 -14142367 + (TG)n Simple_repeat Simple_repeat 1 32 0 2416 139 38 52 chr21 20765203 20765421 -14142149 + L1MB2 LINE L1 5912 6126 -45 1898 169 0 0 chr21 20765421 20765716 -14141854 + AluJb SINE Alu 2 296 -16 2416 139 38 52 chr21 20765716 20765759 -14141811 + L1MB2 LINE L1 6126 6168 -3 518 137 53 91 chr21 20766168 20766252 -14141318 - L1M4 LINE L1 -768 5378 5300 2170 99 3 22 chr21 20766252 20766566 -14141004 - AluSc SINE Alu -1 308 1 518 137 53 91 chr21 20766566 20766626 -14140944 - L1M4 LINE L1 -846 5300 5239 1840 179 0 13 chr21 20766650 20767128 -14140442 + AluJo SINE Alu 1 474 0 340 325 45 0 chr21 20767207 20767361 -14140209 - L2 LINE L2 -227 3086 2926 296 116 0 0 chr21 20767448 20767491 -14140079 - MLT1D LTR MaLR 0 505 463 1241 95 89 0 chr21 20767491 20767660 -14139910 + AluSx SINE Alu 1 184 -128 271 351 30 30 chr21 20767694 20767862 -14139708 - L2 LINE L2 -1385 1929 1762 2152 107 7 3 chr21 20768145 20768434 -14139136 + AluSx SINE Alu 1 290 -22 219 36 0 0 chr21 20768513 20768541 -14139029 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1274 222 84 22 chr21 20768566 20768930 -14138640 + L1MA7 LINE L1 5899 6286 0 1136 187 21 13 chr21 20768930 20769165 -14138405 + L1MB3 LINE L1 5945 6181 -2 826 262 63 30 chr21 20770090 20770300 -14137270 + L1MD3 LINE L1 6870 7072 -923 204 40 0 0 chr21 20770300 20770325 -14137245 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 826 262 63 30 chr21 20770325 20770551 -14137019 + L1MD3 LINE L1 7072 7298 -697 2415 73 0 22 chr21 20770557 20770872 -14136698 + AluY SINE Alu 1 308 -3 263 196 78 0 chr21 20770885 20770936 -14136634 + MLT1F1 LTR MaLR 76 130 -437 2749 204 22 26 chr21 20770936 20771330 -14136240 + L1MD3 LINE L1 7406 7799 -196 2422 58 0 3 chr21 20771330 20771621 -14135949 + AluY SINE Alu 1 290 -21 2749 204 22 26 chr21 20771621 20771809 -14135761 + L1MD3 LINE L1 7799 7986 -9 3688 16 28 0 chr21 20773227 20773654 -14133916 + L1PA4 LINE L1 5717 6155 0 256 98 0 39 chr21 20774735 20774786 -14132784 + (TTAA)n Simple_repeat Simple_repeat 1 49 0 2189 113 7 7 chr21 20775092 20775392 -14132178 - AluSx SINE Alu -12 300 1 362 303 99 26 chr21 20776044 20776196 -14131374 - L2 LINE L2 -12 3260 3098 385 332 81 33 chr21 20777506 20777840 -14129730 + L2 LINE L2 2244 2593 -721 3924 156 17 8 chr21 20777988 20778851 -14128719 - L1PB4 LINE L1 -1 6155 5132 2057 106 3 30 chr21 20778851 20779153 -14128417 - AluSq SINE Alu -6 307 14 3924 156 17 8 chr21 20779153 20779165 -14128405 - L1PB4 LINE L1 -1024 5132 5122 33 56 0 0 chr21 20779546 20779600 -14127970 + AT_rich Low_complexity Low_complexity 1 54 0 269 256 44 22 chr21 20779637 20779727 -14127843 + MIR SINE MIR 39 130 -132 2501 72 3 0 chr21 20782101 20782405 -14125165 - AluSg SINE Alu -5 305 1 1560 174 44 55 chr21 20783222 20783521 -14124049 + MLT1A1 LTR MaLR 1 297 -68 2330 115 0 0 chr21 20783521 20783833 -14123737 + AluSx SINE Alu 1 312 0 1560 174 44 55 chr21 20783833 20783896 -14123674 + MLT1A1 LTR MaLR 297 359 -6 333 263 21 0 chr21 20783950 20784045 -14123525 - MIR3 SINE MIR -1 207 111 2460 91 0 0 chr21 20784247 20784556 -14123014 + AluSq SINE Alu 1 309 -4 681 125 18 9 chr21 20785136 20785248 -14122322 - AluJb SINE Alu -10 302 190 2077 105 49 0 chr21 20785933 20786218 -14121352 - AluSp SINE Alu -14 299 1 1955 114 12 35 chr21 20787039 20787383 -14120187 + PABL_A-int LTR ERV1 3137 3459 -1556 2116 98 19 3 chr21 20787380 20787698 -14119872 - MER41A-int LTR ERV1 -2357 3589 3267 456 46 0 0 chr21 20787698 20787763 -14119807 - AluSc SINE Alu -2 307 243 859 67 50 0 chr21 20787763 20787883 -14119687 - MER41A-int LTR ERV1 -2668 3278 3153 2337 120 36 15 chr21 20787865 20788285 -14119285 - MER41A-int LTR ERV1 -4227 3589 1074 4352 136 17 2 chr21 20788265 20788904 -14118666 - MER41A-int LTR ERV1 -5297 649 1 3953 107 7 0 chr21 20788990 20789540 -14118030 - MER41A LTR ERV1 0 554 1 302 206 87 48 chr21 20789545 20789671 -14117899 - MER57A-int LTR ERV1 -6442 1678 1548 321 208 60 57 chr21 20789641 20789868 -14117702 - MER57A-int LTR ERV1 -3000 2888 2663 2534 57 0 10 chr21 20789868 20790168 -14117402 + AluY SINE Alu 1 297 -14 321 208 60 57 chr21 20790168 20790185 -14117385 - MER57A-int LTR ERV1 -3225 2663 1691 332 247 0 11 chr21 20790283 20790372 -14117198 - MER57A-int LTR ERV1 -2890 3441 3354 524 236 0 0 chr21 20790420 20790526 -14117044 - MER57A-int LTR ERV1 -2990 3341 3236 376 213 71 47 chr21 20790594 20790771 -14116799 - MER57A-int LTR ERV1 -3643 1228 1096 266 216 0 0 chr21 20790761 20790812 -14116758 - MER57A-int LTR ERV1 -7398 139 89 338 272 0 48 chr21 20791117 20791220 -14116350 - MER57A-int LTR ERV1 -3681 2650 2553 1995 107 10 17 chr21 20791327 20791626 -14115944 - MER57A-int LTR ERV1 -6695 842 546 696 84 0 11 chr21 20791629 20791724 -14115846 + MER4A LTR ERV1 2 95 -569 1884 136 35 2 chr21 20791723 20792062 -14115508 + MER4A LTR ERV1 256 664 0 1873 128 14 20 chr21 20792062 20792358 -14115212 - MER57A-int LTR ERV1 -6990 547 254 442 19 0 19 chr21 20792358 20792412 -14115158 - MER4E LTR ERV1 -713 53 1 459 241 11 0 chr21 20792412 20792499 -14115071 - MER57A-int LTR ERV1 -7449 88 1 2446 138 25 13 chr21 20792499 20792897 -14114673 - MER57A LTR ERV1 0 403 1 257 275 92 18 chr21 20792899 20793008 -14114562 - MIR SINE MIR -130 132 16 621 126 0 11 chr21 20793137 20793224 -14114346 + 5S rRNA rRNA 4 89 -32 2471 71 0 22 chr21 20793543 20793854 -14113716 - AluY SINE Alu -7 304 1 4492 256 30 31 chr21 20794302 20795878 -14111692 - L1PA12 LINE L1 -2590 4994 3420 3578 245 21 15 chr21 20795941 20797159 -14110411 - L1PA12 LINE L1 -4168 3416 2182 423 0 0 0 chr21 20797257 20797304 -14110266 + (TTTA)n Simple_repeat Simple_repeat 1 47 0 628 355 17 31 chr21 20797934 20798224 -14109346 - L1PA12 LINE L1 -6500 1074 789 29 60 0 0 chr21 20798239 20798289 -14109281 + AT_rich Low_complexity Low_complexity 1 50 0 4863 154 47 2 chr21 20800100 20800938 -14106632 + Tigger1 DNA MER2_type 1 875 -1543 524 283 95 39 chr21 20801427 20801710 -14105860 + L1M4 LINE L1 2156 2454 -3692 2298 116 0 0 chr21 20801735 20802038 -14105532 - AluSx SINE Alu -9 303 1 2639 119 34 51 chr21 20802080 20802279 -14105291 - MER1A DNA MER1_type -2173 529 328 281 0 19 58 chr21 20802279 20802331 -14105239 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1839 138 0 32 chr21 20802336 20802618 -14104952 - AluSg SINE Alu -37 273 1 2639 119 34 51 chr21 20802618 20802906 -14104664 - MER1A DNA MER1_type -2378 324 44 199 319 43 21 chr21 20807628 20807722 -14099848 + L3 LINE CR1 650 745 -832 3515 116 12 6 chr21 20807768 20808276 -14099294 - MER9 LTR ERVK 0 511 1 2498 74 0 3 chr21 20810154 20810465 -14097105 - AluY SINE Alu -1 310 1 369 0 0 0 chr21 20810536 20810577 -14096993 + (TG)n Simple_repeat Simple_repeat 2 42 0 4619 137 37 25 chr21 20810969 20811744 -14095826 + LTR1 LTR ERV1 1 785 0 208 233 47 6 chr21 20811812 20811919 -14095651 + MIR SINE MIR 29 187 -75 1940 173 13 0 chr21 20812646 20812952 -14094618 - AluJb SINE Alu -2 310 1 1702 129 0 0 chr21 20813084 20813317 -14094253 - AluSg/x SINE Alu -2 308 76 2887 7 0 0 chr21 20813367 20813675 -14093895 + AluYa5 SINE Alu 1 308 -3 187 91 23 23 chr21 20816266 20816310 -14091260 + (TG)n Simple_repeat Simple_repeat 2 45 0 254 285 17 6 chr21 20816404 20816576 -14090994 + (TG)n Simple_repeat Simple_repeat 2 175 0 2288 100 0 29 chr21 20818101 20818411 -14089159 + AluSc SINE Alu 1 301 -8 1828 170 3 0 chr21 20818526 20818808 -14088762 - AluJb SINE Alu -6 306 24 206 381 48 0 chr21 20819667 20819751 -14087819 + MIR SINE MIR 19 106 -102 704 212 0 0 chr21 20820183 20820410 -14087160 + AluJb SINE Alu 167 393 0 488 267 82 17 chr21 20820414 20820467 -14087103 + MLT1D LTR MaLR 180 228 -277 180 0 0 0 chr21 20820467 20820487 -14087083 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 488 267 82 17 chr21 20820487 20820725 -14086845 + MLT1D LTR MaLR 228 490 -15 204 291 97 19 chr21 20820727 20820830 -14086740 + MER5A DNA MER1_type 55 165 -24 2435 77 10 13 chr21 20822697 20823007 -14084563 - AluY SINE Alu -2 309 1 1968 236 29 21 chr21 20823059 20823575 -14083995 + MER77 LTR ERV1 1 520 -85 21 36 0 0 chr21 20823928 20823956 -14083614 + GC_rich Low_complexity Low_complexity 1 28 0 2088 71 0 4 chr21 20825840 20826094 -14081476 + AluY SINE Alu 53 305 -6 898 217 39 0 chr21 20826288 20826491 -14081079 - MER63 DNA MER1_type -849 212 2 2466 90 0 10 chr21 20826496 20826808 -14080762 + AluSg1 SINE Alu 1 309 0 2362 136 29 50 chr21 20827062 20827518 -14080052 - L1MB3 LINE L1 -51 6132 5687 2205 132 7 0 chr21 20827704 20828014 -14079556 + AluSx SINE Alu 1 312 0 190 216 20 39 chr21 20828028 20828079 -14079491 - L2 LINE L2 -90 3182 3133 25 0 0 0 chr21 20828255 20828280 -14079290 + AT_rich Low_complexity Low_complexity 1 25 0 953 217 55 9 chr21 20828387 20828604 -14078966 - MLT1B LTR MaLR 0 390 164 2057 117 25 0 chr21 20828605 20828886 -14078684 - AluSx SINE Alu -2 310 23 410 293 45 25 chr21 20828893 20829050 -14078520 + MIR SINE MIR 88 247 -15 2621 49 0 7 chr21 20831348 20831656 -14075914 - AluY SINE Alu -5 306 1 25 0 0 0 chr21 20831844 20831869 -14075701 + AT_rich Low_complexity Low_complexity 1 25 0 2144 128 0 10 chr21 20834953 20835249 -14072321 + AluSx SINE Alu 1 293 -19 559 278 82 52 chr21 20835436 20835727 -14071843 + MER21B LTR ERV1 98 397 -466 456 219 30 71 chr21 20835707 20835876 -14071694 + MER21B LTR ERV1 550 711 -152 343 207 11 58 chr21 20835882 20835969 -14071601 + MER21B LTR ERV1 657 739 -124 2547 70 3 0 chr21 20837371 20837671 -14069899 + AluSp SINE Alu 1 301 -12 822 223 62 19 chr21 20838035 20838246 -14069324 - MER58A DNA MER1_type -3 221 2 192 77 0 0 chr21 20838284 20838310 -14069260 + (A)n Simple_repeat Simple_repeat 1 26 0 2384 108 0 0 chr21 20838434 20838740 -14068830 + AluSx SINE Alu 1 306 -6 365 154 0 64 chr21 20839307 20839385 -14068185 + MER116 DNA Mariner 1 73 -7 2160 104 7 0 chr21 20839557 20839835 -14067735 + AluSx SINE Alu 16 295 -17 246 328 0 0 chr21 20840110 20840171 -14067399 + L2 LINE L2 3186 3246 -67 220 259 19 0 chr21 20840166 20840220 -14067350 - L2 LINE L2 -5 3267 3213 1872 111 33 59 chr21 20840257 20840564 -14067006 - AluJb SINE Alu -13 299 1 24 0 0 0 chr21 20841056 20841080 -14066490 + AT_rich Low_complexity Low_complexity 1 24 0 2112 101 11 0 chr21 20841083 20841361 -14066209 + AluSq SINE Alu 3 283 -30 378 96 24 12 chr21 20841378 20841461 -14066109 + (TA)n Simple_repeat Simple_repeat 2 85 0 522 238 61 0 chr21 20841477 20841624 -14065946 - MER3 DNA MER1_type -86 123 15 293 132 88 29 chr21 20843206 20843274 -14064296 - L2 LINE L2 -84 3229 3158 2255 103 0 0 chr21 20843279 20843581 -14063989 + AluSx SINE Alu 1 302 -10 2179 160 108 2 chr21 20843654 20844297 -14063273 - SATR1 Satellite Satellite 0 711 1 2204 103 6 58 chr21 20844300 20844630 -14062940 - AluSp SINE Alu 0 313 1 1385 194 5 77 chr21 20844816 20845004 -14062566 + L1MA4 LINE L1 5767 5914 -386 1753 164 0 4 chr21 20845004 20845278 -14062292 + AluSx SINE Alu 11 283 -29 1385 194 5 77 chr21 20845278 20845481 -14062089 + L1MA4 LINE L1 5914 6130 -170 2201 113 3 3 chr21 20845559 20845860 -14061710 - AluSp SINE Alu -12 301 1 2924 245 26 31 chr21 20845905 20846897 -14060673 + L1MB4 LINE L1 4818 5813 -367 1978 124 4 4 chr21 20846897 20847171 -14060399 + AluSx SINE Alu 6 279 -33 344 22 22 0 chr21 20847177 20847222 -14060348 + (CAAAA)n Simple_repeat Simple_repeat 5 50 0 2924 245 26 31 chr21 20847222 20847317 -14060253 + L1MB4 LINE L1 5818 5912 -268 2280 122 0 3 chr21 20847317 20847629 -14059941 + AluSx SINE Alu 1 311 -1 2924 245 26 31 chr21 20847629 20847874 -14059696 + L1MB4 LINE L1 5912 6152 -28 35 0 0 0 chr21 20847891 20847926 -14059644 + AT_rich Low_complexity Low_complexity 1 35 0 327 360 51 19 chr21 20848701 20848915 -14058655 - MIR SINE MIR -10 252 32 2193 116 0 7 chr21 20849309 20849611 -14057959 + AluSg SINE Alu 1 300 -10 2073 112 0 10 chr21 20850163 20850467 -14057103 - AluSc SINE Alu -8 301 1 1107 215 217 29 chr21 20852178 20853133 -14054437 - SATR1 Satellite Satellite -2 1134 1 1033 203 214 56 chr21 20853172 20853901 -14053669 - SATR1 Satellite Satellite -96 844 1 21 0 0 0 chr21 20854330 20854351 -14053219 + AT_rich Low_complexity Low_complexity 1 21 0 2131 95 65 0 chr21 20854540 20854834 -14052736 - AluSq SINE Alu 0 313 1 2132 100 30 10 chr21 20855404 20855705 -14051865 - AluSg SINE Alu -3 307 1 253 197 158 0 chr21 20855798 20855874 -14051696 - L1ME LINE L1 -344 5818 5731 232 326 11 0 chr21 20855973 20856062 -14051508 - L1M2 LINE L1 -721 5579 5490 4670 125 109 20 chr21 20856270 20856393 -14051177 + L1MD1 LINE L1 5255 5366 -876 2077 135 3 3 chr21 20856393 20856697 -14050873 + AluSx SINE Alu 1 304 -8 4670 125 109 20 chr21 20856697 20857463 -14050107 + L1MD1 LINE L1 5366 6223 -19 1740 168 16 16 chr21 20857584 20857893 -14049677 - AluJo SINE Alu -3 309 1 2304 89 7 0 chr21 20857906 20858198 -14049372 - AluSg SINE Alu -16 294 1 1564 101 0 23 chr21 20858385 20858603 -14048967 - AluSq SINE Alu -16 297 85 1965 149 3 3 chr21 20862448 20862744 -14044826 - AluSx SINE Alu -15 297 2 2179 107 10 3 chr21 20862797 20863096 -14044474 + AluSx SINE Alu 1 301 -11 1816 145 10 108 chr21 20865242 20865657 -14041913 + MLT1A2 LTR MaLR 1 374 0 35 0 0 0 chr21 20866661 20866696 -14040874 + AT_rich Low_complexity Low_complexity 1 35 0 2292 107 0 22 chr21 20867456 20867773 -14039797 - AluSx SINE Alu 0 312 3 1453 193 14 7 chr21 20868119 20868399 -14039171 - AluJo SINE Alu -4 308 27 2339 100 0 0 chr21 20868474 20868773 -14038797 + AluSx SINE Alu 1 299 -13 216 97 0 0 chr21 20868801 20868832 -14038738 + (TA)n Simple_repeat Simple_repeat 2 32 0 1627 148 4 26 chr21 20869457 20869721 -14037849 - AluJb SINE Alu -18 294 37 735 240 96 35 chr21 20870023 20870252 -14037318 - MIR SINE MIR -19 243 1 2160 112 7 0 chr21 20870350 20870654 -14036916 - AluY SINE Alu -5 306 1 721 219 0 8 chr21 20870658 20870786 -14036784 - FLAM_A SINE Alu -6 127 1 569 271 79 6 chr21 20871793 20871972 -14035598 - MIR3 SINE MIR -17 191 1 23 0 0 0 chr21 20875756 20875779 -14031791 + GC_rich Low_complexity Low_complexity 1 23 0 291 292 59 55 chr21 20877168 20877370 -14030200 + L2 LINE L2 421 623 -2691 507 328 98 44 chr21 20878160 20878963 -14028607 + L2 LINE L2 1566 2412 -902 493 359 88 47 chr21 20879000 20879343 -14028227 + L2 LINE L2 2915 3271 -1 216 0 0 0 chr21 20879806 20879830 -14027740 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2052 113 0 0 chr21 20879834 20880109 -14027461 - AluSx SINE Alu -37 275 1 353 268 70 13 chr21 20881780 20881937 -14025633 + L1ME4a LINE L1 5665 5830 -291 2319 97 0 0 chr21 20882262 20882560 -14025010 - AluSx SINE Alu -14 298 1 313 230 72 105 chr21 20883697 20883849 -14023721 - MIR3 SINE MIR -54 154 8 192 40 0 0 chr21 20884226 20884251 -14023319 + (CA)n Simple_repeat Simple_repeat 2 26 0 180 191 0 43 chr21 20885247 20885294 -14022276 - L3 LINE CR1 -717 860 816 1602 179 43 0 chr21 20886209 20886329 -14021241 + AluJb SINE Alu 1 114 -198 225 0 0 0 chr21 20886329 20886354 -14021216 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1602 179 43 0 chr21 20886354 20886512 -14021058 + AluJb SINE Alu 114 291 -21 920 210 8 58 chr21 20888125 20888368 -14019202 + LTR1 LTR ERV1 3 233 -552 1220 208 106 92 chr21 20888406 20888830 -14018740 + LTR1B LTR ERV1 314 743 -83 226 278 78 22 chr21 20889008 20889098 -14018472 - MIR3 SINE MIR -24 184 90 27 0 0 0 chr21 20889153 20889180 -14018390 + AT_rich Low_complexity Low_complexity 1 27 0 1814 212 22 42 chr21 20889428 20889886 -14017684 + LTR2 LTR ERV1 1 449 0 1409 111 0 0 chr21 20889886 20890085 -14017485 + Harlequin LTR ERV1 1 199 -6697 25005 188 6 11 chr21 20890072 20894364 -14013206 + HERVE LTR ERV1 3543 7811 -2 1852 220 18 31 chr21 20894364 20894819 -14012751 + LTR2 LTR ERV1 1 449 0 4580 98 3 2 chr21 20895262 20895857 -14011713 + MER4A LTR ERV1 1 596 -4 1376 161 72 84 chr21 20896947 20897282 -14010288 + MER2 DNA MER2_type 14 344 0 314 227 55 37 chr21 20897475 20897638 -14009932 - L1MC5 LINE L1 -286 7675 7510 700 153 24 8 chr21 20897639 20897763 -14009807 - AluSg/x SINE Alu -20 290 165 403 258 75 75 chr21 20897774 20897987 -14009583 + L2 LINE L2 3028 3240 -73 399 41 0 0 chr21 20898069 20898118 -14009452 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 74 0 0 chr21 20898118 20898139 -14009431 + (CATATA)n Simple_repeat Simple_repeat 2 22 0 2087 118 0 10 chr21 20898139 20898427 -14009143 - AluSx SINE Alu -27 285 1 5030 173 107 62 chr21 20898826 20900217 -14007353 + Charlie1a DNA MER1_type 1 1454 -1 1447 187 33 30 chr21 20901085 20901385 -14006185 + AluJo SINE Alu 1 301 -11 762 221 72 17 chr21 20901574 20901755 -14005815 + MIR SINE MIR 26 216 -46 2456 86 0 3 chr21 20901835 20902149 -14005421 + AluSq SINE Alu 1 313 0 2270 94 16 0 chr21 20902392 20902699 -14004871 - AluSq SINE Alu -1 312 1 35 24 0 0 chr21 20902967 20903009 -14004561 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 20903989 20904011 -14003559 + AT_rich Low_complexity Low_complexity 1 22 0 1027 238 66 14 chr21 20904137 20904650 -14002920 + L2 LINE L2 2750 3313 0 404 210 12 0 chr21 20904906 20904987 -14002583 - Charlie1 DNA MER1_type -2627 134 53 34 0 0 0 chr21 20905446 20905480 -14002090 + AT_rich Low_complexity Low_complexity 1 34 0 22 56 0 0 chr21 20909970 20910006 -13997564 + AT_rich Low_complexity Low_complexity 1 36 0 1969 142 0 17 chr21 20910674 20910976 -13996594 - AluSx SINE Alu -15 297 1 243 252 96 22 chr21 20914285 20914420 -13993150 - L1MC4 LINE L1 0 8042 7898 24 53 0 0 chr21 20914483 20914521 -13993049 + AT_rich Low_complexity Low_complexity 1 38 0 248 265 162 0 chr21 20914820 20914888 -13992682 + MIR SINE MIR 19 97 -165 2511 40 0 10 chr21 20914957 20915259 -13992311 + AluY SINE Alu 1 299 -12 1628 169 0 38 chr21 20915368 20915682 -13991888 + AluJo SINE Alu 5 306 -6 32 57 0 0 chr21 20915684 20915737 -13991833 + AT_rich Low_complexity Low_complexity 1 53 0 319 81 176 0 chr21 20917679 20917753 -13989817 - MER33 DNA MER1_type -82 242 156 1263 197 27 0 chr21 20917759 20917982 -13989588 - MER8 DNA MER2_type 0 239 11 882 173 0 26 chr21 20917990 20918146 -13989424 - MER33 DNA MER1_type -170 154 3 203 311 46 86 chr21 20918694 20918845 -13988725 - MIR SINE MIR -42 220 76 2329 72 0 0 chr21 20919363 20919653 -13987917 - AluSc SINE Alu -18 291 2 1435 162 19 30 chr21 20920266 20920532 -13987038 - AluJo SINE Alu -10 302 40 1839 113 9 98 chr21 20920668 20920994 -13986576 + AluSp SINE Alu 1 297 -16 2507 153 24 5 chr21 20921145 20921563 -13986007 + MSTA LTR MaLR 1 426 -2 2125 120 3 0 chr21 20922354 20922645 -13984925 + AluSx SINE Alu 1 292 -20 1600 157 81 0 chr21 20922829 20923144 -13984426 + AluJb SINE Alu 1 336 0 1070 237 60 12 chr21 20923708 20923957 -13983613 - MIR SINE MIR 0 262 2 21 36 0 0 chr21 20925076 20925104 -13982466 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr21 20925418 20925447 -13982123 + AT_rich Low_complexity Low_complexity 1 29 0 1109 128 0 0 chr21 20925693 20925894 -13981676 - AluSg/x SINE Alu 0 327 127 2322 83 0 19 chr21 20925896 20926208 -13981362 - AluY SINE Alu -2 309 4 445 109 0 0 chr21 20926251 20926315 -13981255 + MER3 DNA MER1_type 146 209 0 312 210 65 0 chr21 20926272 20926334 -13981236 - MER3 DNA MER1_type -119 90 25 1922 119 4 11 chr21 20927576 20927854 -13979716 + AluSx SINE Alu 1 276 -36 1265 211 28 46 chr21 20929345 20929672 -13977898 - LTR60 LTR ERV1 -160 426 106 2186 112 0 25 chr21 20930432 20930752 -13976818 + AluSp SINE Alu 1 312 -1 1523 171 63 25 chr21 20933780 20934066 -13973504 - AluJb SINE Alu -1 311 15 2208 219 64 13 chr21 20934824 20934927 -13972643 + L1MC4 LINE L1 6482 6578 -1464 2268 104 0 3 chr21 20934927 20935225 -13972345 + AluSc SINE Alu 1 297 -12 2208 219 64 13 chr21 20935225 20935668 -13971902 + L1MC4 LINE L1 6578 7056 -986 269 210 74 12 chr21 20935681 20935762 -13971808 + L1MC4 LINE L1 7303 7388 -654 1863 154 0 3 chr21 20935763 20936048 -13971522 + AluJb SINE Alu 1 284 -28 1619 245 107 0 chr21 20936060 20936538 -13971032 + L1MC4 LINE L1 7369 7897 -145 220 404 40 14 chr21 20937056 20937279 -13970291 + L2 LINE L2 2854 3082 -190 1124 169 29 146 chr21 20937344 20937693 -13969877 - AluYb8 SINE Alu 0 308 1 22 0 0 0 chr21 20937827 20937849 -13969721 + AT_rich Low_complexity Low_complexity 1 22 0 1729 112 4 0 chr21 20937849 20938081 -13969489 + AluSx SINE Alu 56 288 -24 767 180 8 0 chr21 20938897 20939025 -13968545 + FLAM_C SINE Alu 2 130 -3 1928 126 33 7 chr21 20939263 20939565 -13968005 + AluSx SINE Alu 1 310 -2 2222 118 0 0 chr21 20939581 20939877 -13967693 - AluSq SINE Alu -17 296 1 1819 150 11 14 chr21 20939980 20940298 -13967272 + AluSx SINE Alu 5 321 0 838 228 0 0 chr21 20940588 20940746 -13966824 - FRAM SINE Alu -16 160 3 2423 69 3 0 chr21 20941397 20941688 -13965882 - AluSc SINE Alu -16 293 2 395 281 102 8 chr21 20942328 20942456 -13965114 - MIR3 SINE MIR -5 203 64 890 237 68 0 chr21 20942947 20943116 -13964454 + L1ME3A LINE L1 5603 5854 -316 258 194 45 0 chr21 20943116 20943183 -13964387 + L1ME3A LINE L1 5782 5851 -315 799 219 71 83 chr21 20943841 20944166 -13963404 + L1ME3A LINE L1 5843 6163 -7 373 319 50 7 chr21 20944193 20944334 -13963236 - L2 LINE L2 -315 2957 2811 484 302 57 40 chr21 20944435 20944733 -13962837 - L2 LINE L2 -640 2674 2372 214 348 90 0 chr21 20944947 20945036 -13962534 - L3 LINE CR1 -774 803 707 2098 129 3 16 chr21 20945250 20945559 -13962011 + AluSx SINE Alu 1 305 -7 570 294 59 33 chr21 20946423 20946695 -13960875 - L1MCa LINE L1 -4729 1486 1208 967 240 116 32 chr21 20946696 20947023 -13960547 - L1MCa LINE L1 -5017 1379 1006 2257 105 3 0 chr21 20947023 20947318 -13960252 - AluSx SINE Alu -16 296 1 967 240 116 32 chr21 20947318 20947423 -13960147 - L1MCa LINE L1 -5390 1006 911 2466 233 47 25 chr21 20947463 20948171 -13959399 - L1MCa LINE L1 -5631 765 43 196 242 113 0 chr21 20949085 20949147 -13958423 + MIR SINE MIR 81 149 -113 1976 203 69 53 chr21 20949194 20949491 -13958079 + MER119 DNA MER1_type 8 299 -284 2370 106 3 0 chr21 20949491 20949803 -13957767 + AluSq SINE Alu 1 313 0 1976 203 69 53 chr21 20949803 20950017 -13957553 + MER119 DNA MER1_type 299 531 -52 2331 88 3 7 chr21 20950017 20950324 -13957246 + AluSp SINE Alu 1 306 -7 1976 203 69 53 chr21 20950324 20950378 -13957192 + MER119 DNA MER1_type 531 583 0 2140 128 0 7 chr21 20951456 20951753 -13955817 + AluSg SINE Alu 1 295 -15 2378 106 3 0 chr21 20951963 20952266 -13955304 + AluSp SINE Alu 1 304 -9 269 109 22 0 chr21 20952266 20952312 -13955258 + (TA)n Simple_repeat Simple_repeat 2 48 0 2077 131 7 0 chr21 20952328 20952626 -13954944 + AluSx SINE Alu 1 300 -12 338 253 0 24 chr21 20953063 20953146 -13954424 + MER5B DNA MER1_type 72 152 -26 1712 156 3 38 chr21 20953595 20953910 -13953660 + AluJb SINE Alu 1 304 -8 2311 91 0 0 chr21 20954265 20954582 -13952988 + AluSx SINE Alu 1 317 0 1732 169 3 7 chr21 20955898 20956199 -13951371 - AluJb SINE Alu -11 301 2 180 125 0 0 chr21 20958005 20958037 -13949533 + (TCC)n Simple_repeat Simple_repeat 1 32 0 2510 31 3 3 chr21 20959315 20959607 -13947963 - AluY SINE Alu -19 292 1 633 221 101 82 chr21 20960310 20960682 -13946888 + MLT1C LTR MaLR 90 467 0 1792 120 117 20 chr21 20963453 20963795 -13943775 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr21 20963958 20963981 -13943589 + AT_rich Low_complexity Low_complexity 1 23 0 832 218 16 16 chr21 20965655 20965843 -13941727 - MER5A DNA MER1_type -1 188 1 2257 114 0 0 chr21 20966249 20966547 -13941023 - AluSc SINE Alu -11 298 1 205 186 0 0 chr21 20967999 20968042 -13939528 + (TA)n Simple_repeat Simple_repeat 1 43 0 366 186 0 0 chr21 20968551 20968621 -13938949 + MER3 DNA MER1_type 140 209 0 470 176 0 11 chr21 20968621 20968669 -13938901 - MER3 DNA MER1_type -162 47 1 751 281 71 13 chr21 20969134 20969145 -13938425 + MIR SINE MIR 20 29 -233 902 179 40 35 chr21 20969145 20969346 -13938224 - MER105 DNA DNA 0 204 3 751 281 71 13 chr21 20969346 20969558 -13938012 + MIR SINE MIR 29 256 -6 1632 47 0 0 chr21 20969685 20969875 -13937695 + AluY SINE Alu 1 190 -121 868 129 23 15 chr21 20969883 20970015 -13937555 + FLAM_C SINE Alu 1 133 0 251 220 0 0 chr21 20970062 20970112 -13937458 + L1ME1 LINE L1 4838 4887 -1259 1646 137 10 52 chr21 20970241 20970547 -13937023 + MER4A LTR ERV1 372 664 0 1553 198 92 14 chr21 20970582 20971228 -13936342 + L1ME1 LINE L1 4895 5584 -746 3793 119 44 13 chr21 20971329 20971960 -13935610 - MER39B LTR ERV1 0 653 3 613 263 57 0 chr21 20972130 20972305 -13935265 + L1ME1 LINE L1 5970 6154 -12 283 331 65 32 chr21 20972325 20972479 -13935091 + L2 LINE L2 2736 2894 -420 209 360 125 15 chr21 20972618 20972754 -13934816 + L2 LINE L2 3090 3240 -32 1564 96 40 8 chr21 20972785 20973035 -13934535 + Tigger7 DNA MER2_type 2230 2487 0 22 35 0 0 chr21 20973472 20973501 -13934069 + AT_rich Low_complexity Low_complexity 1 29 0 1277 91 37 100 chr21 20974227 20974468 -13933102 + MER30 DNA MER1_type 4 229 -1 521 257 6 53 chr21 20975823 20975899 -13931671 + L1MEc LINE L1 37 115 -6281 5684 89 61 8 chr21 20975899 20977294 -13930276 + L1PA10 LINE L1 4708 6152 -16 521 257 6 53 chr21 20977294 20977388 -13930182 + L1MEc LINE L1 115 199 -6197 1808 152 27 20 chr21 20977851 20978147 -13929423 - AluJo SINE Alu -14 298 1 585 213 31 0 chr21 20978954 20979081 -13928489 + Tigger6 DNA MER2_type 1 131 -1466 2304 111 3 0 chr21 20979257 20979554 -13928016 - AluSx SINE Alu -14 298 1 377 261 57 0 chr21 20979748 20979836 -13927734 + L1MC5 LINE L1 7299 7391 -570 273 231 0 13 chr21 20979837 20979915 -13927655 + L1MC4 LINE L1 7495 7571 -471 491 299 36 9 chr21 20980185 20980409 -13927161 + L1MC4 LINE L1 7782 8011 -31 623 232 76 43 chr21 20981871 20982082 -13925488 - HAL1 LINE L1 -1312 1195 978 1760 101 109 11 chr21 20982707 20982974 -13924596 - AluSq SINE Alu -20 293 1 1917 63 126 11 chr21 20983237 20983506 -13924064 + AluSg SINE Alu 1 300 0 388 306 68 14 chr21 20984308 20984455 -13923115 + MER5A DNA MER1_type 35 189 0 22 0 0 0 chr21 20988374 20988396 -13919174 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr21 20988705 20988727 -13918843 + (A)n Simple_repeat Simple_repeat 1 22 0 193 304 29 0 chr21 20990267 20990336 -13917234 - L3 LINE CR1 -3 1574 1504 866 171 43 37 chr21 20990676 20990863 -13916707 - MER5A DNA MER1_type 0 189 2 360 64 0 0 chr21 20990948 20990995 -13916575 + (TG)n Simple_repeat Simple_repeat 2 48 0 278 340 41 0 chr21 20991499 20991596 -13915974 + MIR SINE MIR 160 260 -2 410 152 0 15 chr21 20991725 20991769 -13915801 + AluS SINE Alu 2 43 -275 286 212 0 15 chr21 20991769 20991814 -13915756 + AluJ/FLAM SINE Alu 1 46 -256 1504 172 30 43 chr21 20991814 20992116 -13915454 + AluJo SINE Alu 1 298 -14 286 212 0 15 chr21 20992116 20992136 -13915434 + AluJ/FLAM SINE Alu 46 65 -237 2427 68 27 0 chr21 20992697 20992992 -13914578 + AluSq SINE Alu 1 303 -10 601 235 15 0 chr21 20993423 20993555 -13914015 - L1ME LINE L1 -462 5659 5526 2381 91 0 3 chr21 20993764 20994073 -13913497 + AluSp SINE Alu 1 308 -5 22 56 0 0 chr21 20994599 20994635 -13912935 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr21 20994663 20994689 -13912881 + AT_rich Low_complexity Low_complexity 1 26 0 2043 124 21 0 chr21 20995919 20996209 -13911361 + AluSx SINE Alu 1 296 -16 2983 73 3 3 chr21 20997548 20997903 -13909667 + THE1A LTR MaLR 1 355 0 489 222 40 0 chr21 20998102 20998201 -13909369 + MSTD LTR MaLR 3 105 -323 907 202 56 28 chr21 20998230 20998443 -13909127 + MSTD LTR MaLR 178 396 0 256 206 157 29 chr21 21000851 21000953 -13906617 - MIR SINE MIR -75 133 19 1203 27 0 0 chr21 21001904 21002051 -13905519 + (GA)n Simple_repeat Simple_repeat 1 147 0 2048 96 33 17 chr21 21003131 21003433 -13904137 - AluSc SINE Alu -2 307 1 323 262 90 25 chr21 21003444 21003566 -13904004 - L1ME LINE L1 -302 5819 5690 1102 153 0 0 chr21 21003786 21003985 -13903585 - AluSg/x SINE Alu 0 310 123 216 0 0 0 chr21 21003985 21004009 -13903561 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2099 110 3 3 chr21 21004009 21004291 -13903279 - AluSg SINE Alu -28 282 1 21 0 0 0 chr21 21004291 21004312 -13903258 + AT_rich Low_complexity Low_complexity 1 21 0 3225 93 101 6 chr21 21004744 21005240 -13902330 - Tigger3b DNA MER2_type 0 1232 690 826 101 0 0 chr21 21005251 21005360 -13902210 - AluSg/x SINE Alu -8 301 193 1826 126 10 51 chr21 21005360 21005653 -13901917 - AluSx SINE Alu -29 283 3 2161 130 3 0 chr21 21005675 21005974 -13901596 - AluSp SINE Alu -12 301 2 2037 115 40 0 chr21 21006028 21006332 -13901238 - Tigger3b DNA MER2_type -635 596 281 1850 190 30 25 chr21 21006477 21006840 -13900730 - MLT1A1 LTR MaLR 0 365 1 4082 121 0 2 chr21 21006881 21007409 -13900161 + MER1A DNA MER1_type 1 527 0 1671 147 20 41 chr21 21007409 21007623 -13899947 - Tigger3b DNA MER2_type -945 286 78 1864 124 64 0 chr21 21007623 21007906 -13899664 - AluSx SINE Alu -11 301 1 1671 147 20 41 chr21 21007906 21007983 -13899587 - Tigger3b DNA MER2_type -1153 78 1 24 32 0 0 chr21 21008788 21008819 -13898751 + AT_rich Low_complexity Low_complexity 1 31 0 346 252 78 43 chr21 21009001 21009020 -13898550 + L2 LINE L2 3192 3209 -104 2189 168 25 30 chr21 21009020 21009418 -13898152 + MSTD LTR MaLR 1 396 0 346 252 78 43 chr21 21009418 21009513 -13898057 + L2 LINE L2 3209 3310 -3 2080 99 38 0 chr21 21009652 21009944 -13897626 - AluSx SINE Alu -9 303 1 2340 167 33 33 chr21 21010038 21010464 -13897106 + MSTB LTR MaLR 1 426 0 192 77 0 0 chr21 21010467 21010493 -13897077 + (A)n Simple_repeat Simple_repeat 1 26 0 27 0 0 0 chr21 21011287 21011314 -13896256 + AT_rich Low_complexity Low_complexity 1 27 0 266 114 0 0 chr21 21011488 21011523 -13896047 + MSTC LTR MaLR 295 329 -99 454 280 10 0 chr21 21011614 21011714 -13895856 - L2 LINE L2 -3 3269 3169 1542 196 86 11 chr21 21011869 21012446 -13895124 - LTR48 LTR ERV1 0 644 1 2380 72 0 23 chr21 21013474 21013779 -13893791 + AluSg SINE Alu 1 298 -12 1415 181 55 26 chr21 21013794 21014065 -13893505 + AluJo SINE Alu 6 284 -28 4011 215 74 65 chr21 21014084 21014512 -13893058 - L1MC4 LINE L1 -38 8004 7581 2104 106 38 3 chr21 21014512 21014804 -13892766 - AluSx SINE Alu -10 302 1 4011 215 74 65 chr21 21014804 21014992 -13892578 - L1MC4 LINE L1 -461 7581 7396 1339 91 65 15 chr21 21014992 21015191 -13892379 - L1MA1 LINE L1 0 6302 6094 4011 215 74 65 chr21 21015191 21015892 -13891678 - L1MC4 LINE L1 -646 7396 6574 1815 150 37 14 chr21 21015892 21016186 -13891384 + AluJo SINE Alu 1 301 -11 4011 215 74 65 chr21 21016186 21016404 -13891166 - L1MC4 LINE L1 -1468 6574 6359 338 216 0 34 chr21 21016522 21016610 -13890960 - L1ME3A LINE L1 0 6170 6086 303 263 159 45 chr21 21016680 21016969 -13890601 - L1ME3A LINE L1 -2203 5605 5284 1720 179 7 10 chr21 21017072 21017373 -13890197 + AluJo SINE Alu 1 300 -12 853 194 0 0 chr21 21017437 21017581 -13889989 - L1PB4 LINE L1 -3 6153 6010 2825 97 11 0 chr21 21018031 21018391 -13889179 - THE1B LTR MaLR 0 364 1 1908 181 35 3 chr21 21018897 21019240 -13888330 - MER63C DNA MER1_type 0 931 578 2314 199 18 2 chr21 21019275 21019733 -13887837 - MER63C DNA MER1_type -421 509 45 2888 104 14 66 chr21 21019735 21020233 -13887337 - MER41A LTR ERV1 -82 472 1 1343 122 54 0 chr21 21020233 21020437 -13887133 - MER41A-int LTR ERV1 -2 5944 5730 891 148 0 0 chr21 21020435 21020570 -13887000 - MER41A-int LTR ERV1 -1173 4773 4639 569 84 60 0 chr21 21020565 21020648 -13886922 - MER41B-int LTR ERV1 -5858 88 1 1111 90 7 0 chr21 21020648 21020803 -13886767 - MER41B LTR ERV1 0 635 480 408 271 57 70 chr21 21020966 21021210 -13886360 + Charlie8 DNA MER1_type 85 272 -2145 34 55 0 0 chr21 21021443 21021498 -13886072 + AT_rich Low_complexity Low_complexity 1 55 0 227 288 0 15 chr21 21021529 21021595 -13885975 + T-rich Low_complexity Low_complexity 3 67 0 2198 73 4 0 chr21 21021954 21022226 -13885344 - AluSp SINE Alu -2 311 39 525 90 0 0 chr21 21022962 21023040 -13884530 - AluSp/q SINE Alu -2 311 234 2076 72 11 25 chr21 21023040 21023317 -13884253 - AluSx SINE Alu -39 273 1 936 95 0 0 chr21 21025986 21026123 -13881447 + (TTCC)n Simple_repeat Simple_repeat 2 138 0 1873 155 35 3 chr21 21027318 21027608 -13879962 - AluSx SINE Alu -13 299 1 358 313 112 8 chr21 21027614 21027748 -13879822 + L2 LINE L2 3165 3312 -1 791 276 41 62 chr21 21027781 21028071 -13879499 - MLT1K LTR MaLR -13 575 292 1197 197 19 9 chr21 21028112 21028325 -13879245 + AluJo SINE Alu 2 216 -96 235 148 74 0 chr21 21028326 21028380 -13879190 + MLT1B LTR MaLR 331 388 -2 565 176 0 0 chr21 21028653 21028738 -13878832 + AluJo SINE Alu 213 297 -15 1833 158 17 0 chr21 21028741 21029033 -13878537 + AluSx SINE Alu 1 297 -15 222 91 0 0 chr21 21029047 21029080 -13878490 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 279 305 71 13 chr21 21029105 21029259 -13878311 - MLT1K LTR MaLR -425 163 1 2125 122 0 13 chr21 21029718 21030021 -13877549 + AluSx SINE Alu 1 299 -13 2294 87 40 7 chr21 21030594 21030894 -13876676 + AluSg SINE Alu 1 310 0 432 240 21 0 chr21 21031037 21031133 -13876437 + MLT1J2 LTR MaLR 37 134 -316 434 322 55 11 chr21 21031153 21031336 -13876234 + MLT1J2 LTR MaLR 251 441 -9 207 354 40 10 chr21 21031419 21031518 -13876052 - L2 LINE L2 -12 3301 3200 2325 96 3 7 chr21 21031617 21031918 -13875652 + AluSq SINE Alu 1 300 -13 401 244 33 28 chr21 21032195 21032375 -13875195 - Charlie7 DNA MER1_type -3 2609 2429 751 91 0 0 chr21 21032866 21032965 -13874605 - AluSg/x SINE Alu -38 272 174 189 0 0 0 chr21 21034334 21034355 -13873215 + (TA)n Simple_repeat Simple_repeat 1 21 0 922 173 0 0 chr21 21034371 21034504 -13873066 - FLAM_C SINE Alu 0 133 1 2188 191 118 34 chr21 21034997 21035419 -13872151 + MLT1D LTR MaLR 1 467 -38 2249 103 0 23 chr21 21035419 21035720 -13871850 - AluSx SINE Alu -18 294 1 2188 191 118 34 chr21 21035720 21035763 -13871807 + MLT1D LTR MaLR 467 505 0 2135 147 51 31 chr21 21036873 21037228 -13870342 - THE1B LTR MaLR -2 362 1 299 237 26 0 chr21 21037245 21037321 -13870249 + L2 LINE L2 3223 3300 -13 2394 69 28 0 chr21 21037393 21037683 -13869887 - AluSp SINE Alu -15 298 1 1370 119 99 16 chr21 21038678 21038931 -13868639 + L1MC3 LINE L1 7512 7785 0 384 22 0 0 chr21 21039237 21039282 -13868288 + (TG)n Simple_repeat Simple_repeat 1 45 0 1330 176 88 8 chr21 21039304 21039721 -13867849 - AluJo SINE Alu 0 438 1 1153 286 58 41 chr21 21040031 21040305 -13867265 + L2 LINE L2 1831 2099 -1215 2414 64 3 22 chr21 21040305 21040619 -13866951 - AluY SINE Alu -3 308 1 1153 286 58 41 chr21 21040619 21040876 -13866694 + L2 LINE L2 2099 2371 -943 583 218 39 103 chr21 21041079 21041198 -13866372 - MIR SINE MIR -2 260 162 2068 120 0 3 chr21 21041198 21041482 -13866088 - AluSx SINE Alu -21 291 9 583 218 39 103 chr21 21041482 21041596 -13865974 - MIR SINE MIR -100 162 42 1831 154 29 57 chr21 21041745 21042095 -13865475 + MSTD LTR MaLR 1 340 -56 22 35 0 0 chr21 21044206 21044235 -13863335 + AT_rich Low_complexity Low_complexity 1 29 0 1722 180 83 21 chr21 21044287 21044626 -13862944 - MLT1A1 LTR MaLR -5 360 1 3202 107 57 53 chr21 21044666 21045191 -13862379 + MER1A DNA MER1_type 1 527 0 212 376 56 24 chr21 21045313 21045438 -13862132 - L2 LINE L2 0 3272 3144 325 256 34 8 chr21 21045959 21046076 -13861494 + MIR SINE MIR 84 203 -59 341 274 62 9 chr21 21046634 21046747 -13860823 + LTR67 LTR ERVL 439 557 0 2583 115 78 5 chr21 21046776 21047175 -13860395 + MSTA LTR MaLR 1 428 0 2023 147 3 0 chr21 21047920 21048219 -13859351 + AluJo SINE Alu 1 300 -12 189 74 0 0 chr21 21050391 21050418 -13857152 + (TC)n Simple_repeat Simple_repeat 1 27 0 2285 116 0 3 chr21 21050430 21050741 -13856829 - AluSx SINE Alu -2 310 1 458 325 29 10 chr21 21050904 21051113 -13856457 - L3 LINE CR1 -102 1475 1263 1819 178 0 7 chr21 21051315 21051608 -13855962 - AluJo SINE Alu -21 291 1 1483 186 11 0 chr21 21051807 21052081 -13855489 + AluSx SINE Alu 36 312 0 499 216 128 0 chr21 21052166 21052268 -13855302 + FLAM_A SINE Alu 8 122 -20 5250 112 10 63 chr21 21052502 21052847 -13854723 - Tigger4(Zombi) DNA MER2_type 0 2731 2369 2159 88 0 47 chr21 21052847 21053178 -13854392 + AluSg SINE Alu 1 317 0 5250 112 10 63 chr21 21053178 21053238 -13854332 - Tigger4(Zombi) DNA MER2_type -362 2369 2307 7250 59 0 0 chr21 21053238 21054330 -13853240 + L1PA6 LINE L1 5055 6151 -3 5250 112 10 63 chr21 21054330 21054827 -13852743 - Tigger4(Zombi) DNA MER2_type -424 2307 1875 952 147 7 0 chr21 21054830 21054973 -13852597 - Tigger4(Zombi) DNA MER2_type -2587 144 1 3755 137 14 3 chr21 21054977 21055596 -13851974 + L1MB8 LINE L1 5552 6177 -1 1892 177 0 0 chr21 21055630 21055930 -13851640 - MLT2B1 LTR ERVL -20 500 201 2756 39 0 0 chr21 21056001 21056307 -13851263 + AluY SINE Alu 1 306 -5 2109 109 0 30 chr21 21057236 21057539 -13850031 + AluSg SINE Alu 1 294 -16 833 265 40 0 chr21 21058623 21058846 -13848724 - MIR SINE MIR -3 259 28 1649 198 33 24 chr21 21059101 21059434 -13848136 + MLT1A1 LTR MaLR 30 365 0 1435 250 68 51 chr21 21059445 21059521 -13848049 - L1ME3A LINE L1 -344 5826 5753 1753 162 3 51 chr21 21059521 21059836 -13847734 - AluJo SINE Alu -12 300 1 1435 250 68 51 chr21 21059836 21060397 -13847173 - L1ME3A LINE L1 -417 5753 5164 2205 118 3 7 chr21 21060397 21060701 -13846869 - AluSp SINE Alu -10 303 1 1435 250 68 51 chr21 21060701 21060847 -13846723 - L1ME3A LINE L1 -1006 5164 5022 296 159 159 0 chr21 21060847 21060916 -13846654 + MER116 DNA Mariner 1 80 0 275 295 93 7 chr21 21061085 21061224 -13846346 - L1ME3A LINE L1 -1358 4788 4638 1421 116 30 17 chr21 21061254 21061487 -13846083 - L1MA5A LINE L1 -7 6290 6055 2173 88 7 14 chr21 21061733 21062029 -13845541 - AluSg SINE Alu -16 294 1 1738 99 5 0 chr21 21062053 21062276 -13845294 - AluSp SINE Alu -89 224 1 1655 179 0 10 chr21 21062434 21062730 -13844840 - AluJo SINE Alu -19 293 1 2552 55 0 3 chr21 21063056 21063364 -13844206 - AluY SINE Alu -4 307 1 336 328 87 28 chr21 21063971 21064328 -13843242 + L1ME LINE L1 5378 5755 -366 258 318 80 40 chr21 21064329 21064530 -13843040 - MIR SINE MIR -27 235 27 335 245 226 85 chr21 21065999 21066211 -13841359 + MIR SINE MIR 21 262 0 2100 126 10 3 chr21 21066325 21066627 -13840943 - AluSx SINE Alu -8 304 1 229 288 80 83 chr21 21066722 21067073 -13840497 + L1M4 LINE L1 3813 4162 -1984 1485 144 9 9 chr21 21068164 21068393 -13839177 + AluJb SINE Alu 75 303 -9 21 0 0 0 chr21 21068603 21068624 -13838946 + AT_rich Low_complexity Low_complexity 1 21 0 309 256 113 60 chr21 21068823 21068956 -13838614 - L2 LINE L2 0 3313 3174 306 264 116 8 chr21 21069260 21069381 -13838189 + MIR SINE MIR 20 153 -109 216 179 77 64 chr21 21069451 21069529 -13838041 - MIR SINE MIR -108 100 22 547 200 27 0 chr21 21069719 21069829 -13837741 + MER81 DNA DNA 2 114 0 2380 136 20 30 chr21 21070799 21071159 -13836411 + MSTA LTR MaLR 1 358 -70 2273 106 3 0 chr21 21071159 21071451 -13836119 - AluSg SINE Alu -17 293 1 2380 136 20 30 chr21 21071451 21071494 -13836076 + MSTA LTR MaLR 358 400 -28 235 146 24 0 chr21 21072068 21072109 -13835461 + THE1B LTR MaLR 323 364 0 1453 165 30 15 chr21 21072548 21072814 -13834756 + MSTA LTR MaLR 51 320 -108 198 0 0 0 chr21 21073191 21073213 -13834357 + (TAA)n Simple_repeat Simple_repeat 2 23 0 22 0 0 0 chr21 21073215 21073237 -13834333 + AT_rich Low_complexity Low_complexity 1 22 0 1917 116 36 0 chr21 21073237 21073514 -13834056 - AluSx SINE Alu -25 287 1 1361 191 3 66 chr21 21074277 21074581 -13832989 - AluJo SINE Alu -13 289 5 396 235 69 0 chr21 21075363 21075465 -13832105 - MER5A DNA MER1_type -80 109 1 347 323 11 54 chr21 21075504 21075690 -13831880 - MIR SINE MIR -6 256 79 2491 70 0 0 chr21 21076602 21076901 -13830669 - AluY SINE Alu -12 299 1 232 195 7 62 chr21 21077264 21077347 -13830223 + MIR SINE MIR 74 149 -59 1792 141 38 3 chr21 21077552 21077842 -13829728 - AluJb SINE Alu -12 300 1 292 226 86 11 chr21 21077924 21078017 -13829553 - MIR SINE MIR -78 184 85 186 71 0 0 chr21 21078124 21078152 -13829418 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 30 0 0 0 chr21 21082010 21082040 -13825530 + AT_rich Low_complexity Low_complexity 1 30 0 247 25 50 0 chr21 21082040 21082080 -13825490 + (CAA)n Simple_repeat Simple_repeat 1 42 0 779 211 7 0 chr21 21082591 21082743 -13824827 - L1PB4 LINE L1 -3 6153 6001 2280 110 0 3 chr21 21082834 21083133 -13824437 - AluSq SINE Alu -15 298 1 2686 188 17 56 chr21 21083471 21084129 -13823441 - LTR27 LTR ERV1 -2 634 3 13099 164 39 49 chr21 21084131 21087400 -13820170 - HUERS-P3b LTR ERV1 -1 6995 2746 2372 101 0 0 chr21 21087400 21087708 -13819862 + AluY SINE Alu 4 311 0 13099 164 39 49 chr21 21087708 21088091 -13819479 - HUERS-P3b LTR ERV1 -4250 2746 2361 276 146 21 0 chr21 21088092 21088140 -13819430 - MER52C LTR ERV1 0 1278 1230 3035 217 66 24 chr21 21088150 21089487 -13818083 - MER52A LTR ERV1 -247 1508 55 2034 159 35 5 chr21 21089756 21090211 -13817359 - MER41-int LTR ERV1 -4384 1451 632 2395 174 6 27 chr21 21090211 21090687 -13816883 - LTR27 LTR ERV1 -169 467 2 2119 106 0 58 chr21 21091456 21091767 -13815803 - AluSg SINE Alu -17 293 1 426 222 111 9 chr21 21092576 21092684 -13814886 + L2 LINE L2 3194 3312 -1 220 340 75 0 chr21 21092796 21092902 -13814668 + MIR3 SINE MIR 85 198 -10 203 189 19 0 chr21 21093084 21093137 -13814433 + CT-rich Low_complexity Low_complexity 3 56 0 2204 125 0 0 chr21 21093990 21094286 -13813284 + AluSx SINE Alu 1 296 -16 1945 120 0 75 chr21 21094288 21094654 -13812916 + AluSc SINE Alu 1 309 0 292 311 104 35 chr21 21094914 21095174 -13812396 - L2 LINE L2 -31 3282 3005 369 188 0 0 chr21 21095201 21095281 -13812289 + (TG)n Simple_repeat Simple_repeat 2 81 0 546 253 27 27 chr21 21095613 21095799 -13811771 + MIR SINE MIR 35 220 -42 1739 160 21 0 chr21 21096560 21096841 -13810729 - AluSx SINE Alu -21 291 5 28 0 0 0 chr21 21097020 21097048 -13810522 + AT_rich Low_complexity Low_complexity 1 28 0 2882 149 7 63 chr21 21097057 21097627 -13809943 - L1MB2 LINE L1 -7 6164 5627 211 53 26 26 chr21 21099610 21099648 -13807922 + (TCTA)n Simple_repeat Simple_repeat 3 40 0 632 93 49 44 chr21 21099716 21099766 -13807804 + (TCTA)n Simple_repeat Simple_repeat 1 49 -599 2074 146 21 29 chr21 21099766 21100144 -13807426 + THE1C LTR MaLR 1 375 0 632 93 49 44 chr21 21100144 21100362 -13807208 + (TCTA)n Simple_repeat Simple_repeat 49 648 0 634 274 42 9 chr21 21100977 21101189 -13806381 + MIR SINE MIR 27 245 -17 205 311 54 0 chr21 21101200 21101274 -13806296 + L2 LINE L2 3196 3273 -40 3029 211 62 70 chr21 21102888 21103105 -13804465 + L1ME2 LINE L1 3730 3947 -2199 2354 62 3 14 chr21 21103105 21103396 -13804174 + AluY SINE Alu 17 304 -7 3029 211 62 70 chr21 21103396 21104192 -13803378 + L1ME2 LINE L1 3947 4747 -1399 2689 87 3 11 chr21 21104192 21104550 -13803020 - THE1A LTR MaLR 0 355 1 11754 89 12 11 chr21 21104550 21106128 -13801442 - THE1A-int LTR MaLR 0 1580 1 2755 74 8 0 chr21 21106128 21106480 -13801090 - THE1A LTR MaLR 0 355 1 3029 211 62 70 chr21 21106480 21106524 -13801046 + L1ME2 LINE L1 4744 4782 -1364 1956 182 61 27 chr21 21106547 21106954 -13800616 - MER72 LTR ERV1 -22 700 280 228 259 104 67 chr21 21107146 21107281 -13800289 - MER4D LTR ERV1 -724 148 9 2178 83 50 23 chr21 21107302 21107603 -13799967 + AluSc SINE Alu 1 309 0 915 230 84 46 chr21 21107655 21107839 -13799731 + L1ME2 LINE L1 4844 5020 -1142 2037 131 0 0 chr21 21107839 21108113 -13799457 + AluSx SINE Alu 1 274 -38 617 0 14 0 chr21 21108120 21108193 -13799377 + (TAAAA)n Simple_repeat Simple_repeat 3 76 0 915 230 84 46 chr21 21108193 21108380 -13799190 + L1ME2 LINE L1 5025 5204 -958 297 51 0 0 chr21 21108380 21108419 -13799151 + (CA)n Simple_repeat Simple_repeat 2 40 0 915 230 84 46 chr21 21108419 21108668 -13798902 + L1ME2 LINE L1 5204 5502 -660 2473 156 19 79 chr21 21108668 21109231 -13798339 - LTR26B LTR ERV1 -6 525 1 625 218 46 0 chr21 21109277 21109538 -13798032 + L1ME2 LINE L1 5597 5886 -278 993 190 9 65 chr21 21109543 21109775 -13797795 - MLT1B LTR MaLR -164 226 8 273 57 0 0 chr21 21110774 21110809 -13796761 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 627 289 53 16 chr21 21111831 21112077 -13795493 + MIR SINE MIR 8 262 0 4514 122 3 0 chr21 21112174 21112807 -13794763 - MER41B LTR ERV1 0 635 1 490 313 139 24 chr21 21112997 21113329 -13794241 - LTR67 LTR ERVL -187 370 1 565 181 133 0 chr21 21113521 21113626 -13793944 + FLAM_C SINE Alu 5 123 -20 297 247 0 0 chr21 21113942 21114015 -13793555 + MIR SINE MIR 119 191 -71 480 266 48 0 chr21 21114075 21114199 -13793371 - MARNA DNA Mariner -282 304 175 241 197 42 14 chr21 21115011 21115082 -13792488 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 181 200 0 0 chr21 21115257 21115292 -13792278 - L2 LINE L2 -15 3257 3223 2821 45 0 0 chr21 21115638 21115972 -13791598 - L1PA5 LINE L1 -8 6146 5813 1096 204 22 0 chr21 21116331 21116561 -13791009 + LTR43 LTR ERV1 176 410 -192 333 217 54 43 chr21 21116586 21116678 -13790892 + MER41E LTR ERV1 361 453 -59 363 23 0 0 chr21 21117774 21117818 -13789752 + (CA)n Simple_repeat Simple_repeat 2 45 0 1065 174 139 27 chr21 21118305 21118564 -13789006 + MER58B DNA MER1_type 37 324 -17 468 321 85 69 chr21 21118887 21119348 -13788222 - L3 LINE CR1 -117 1460 993 3197 133 14 4 chr21 21119608 21120128 -13787442 + L1MB3 LINE L1 5659 6183 0 606 210 23 51 chr21 21120388 21120564 -13787006 + L1MC4a LINE L1 5715 5885 -1923 2024 121 14 3 chr21 21120691 21120981 -13786589 + AluJb SINE Alu 1 293 -19 1277 98 0 0 chr21 21120982 21121146 -13786424 + AluY SINE Alu 133 296 -15 231 167 0 0 chr21 21121255 21121297 -13786273 + (CATA)n Simple_repeat Simple_repeat 3 44 0 1134 225 53 11 chr21 21121875 21122137 -13785433 + MLT1E LTR MaLR 1 273 -320 890 142 20 10 chr21 21122704 21123098 -13784472 + CT-rich Low_complexity Low_complexity 1 397 0 1799 165 36 7 chr21 21123098 21123401 -13784169 - AluJo SINE Alu 0 312 1 1976 146 0 3 chr21 21123927 21124214 -13783356 - AluSx SINE Alu -26 286 1 505 219 117 0 chr21 21124231 21124359 -13783211 + MIR SINE MIR 50 192 -70 2749 98 3 11 chr21 21124963 21125341 -13782229 - THE1C LTR MaLR 0 375 1 230 219 47 0 chr21 21125523 21125587 -13781983 + MLT1J1 LTR MaLR 65 131 -315 613 226 85 30 chr21 21125684 21125848 -13781722 + MLT1J2 LTR MaLR 278 450 0 216 0 0 0 chr21 21126224 21126248 -13781322 + (T)n Simple_repeat Simple_repeat 1 24 0 259 275 0 55 chr21 21127154 21127209 -13780361 - MIR SINE MIR -64 198 148 2280 95 0 7 chr21 21127209 21127504 -13780066 - AluSc SINE Alu -16 293 1 259 275 0 55 chr21 21127504 21127539 -13780031 - MIR SINE MIR -114 148 113 1386 197 15 34 chr21 21127805 21128134 -13779436 - L1MB4 LINE L1 -150 6030 5713 1668 253 124 14 chr21 21128392 21128958 -13778612 + LTR50 LTR ERVL 1 628 -167 2508 212 67 24 chr21 21129653 21130281 -13777289 + L1MC4 LINE L1 7202 7856 -186 5198 131 59 10 chr21 21130294 21131746 -13775824 + L1PA16 LINE L1 4675 6165 -1 189 196 0 0 chr21 21131834 21131890 -13775680 + GA-rich Low_complexity Low_complexity 1 56 0 252 282 10 39 chr21 21132943 21133046 -13774524 + MIR SINE MIR 41 140 -68 2701 142 9 16 chr21 21133053 21133498 -13774072 + MER65A LTR ERV1 3 444 -1 568 275 68 22 chr21 21133821 21134043 -13773527 - LTR33 LTR ERVL -289 232 1 1672 292 60 42 chr21 21134587 21134610 -13772960 - ERVL LTR ERVL -840 4924 4903 1615 194 14 76 chr21 21134610 21135033 -13772537 - MLT2C1 LTR ERVL 0 397 1 1672 292 60 42 chr21 21135033 21135494 -13772076 - ERVL LTR ERVL -861 4903 4452 2261 149 56 17 chr21 21135494 21135702 -13771868 - MSTB LTR MaLR -2 424 226 249 33 0 0 chr21 21135702 21135732 -13771838 + (GA)n Simple_repeat Simple_repeat 1 30 0 2261 149 56 17 chr21 21135732 21135931 -13771639 - MSTB LTR MaLR -200 226 1 1672 292 60 42 chr21 21135931 21136011 -13771559 - ERVL LTR ERVL -1312 4452 4375 1728 192 175 0 chr21 21136011 21136406 -13771164 + MLT2C2 LTR ERVL 1 464 0 1672 292 60 42 chr21 21136406 21136661 -13770909 - ERVL LTR ERVL -1389 4375 4040 1763 180 30 62 chr21 21136661 21137061 -13770509 - MLT1B LTR MaLR -3 387 1 1672 292 60 42 chr21 21137061 21137086 -13770484 - ERVL LTR ERVL -1724 4040 4017 272 279 0 23 chr21 21137777 21137863 -13769707 + GA-rich Low_complexity Low_complexity 4 87 0 1003 176 6 12 chr21 21137863 21138033 -13769537 + MER63A DNA MER1_type 40 208 -2 406 207 0 11 chr21 21138102 21138189 -13769381 - LTR33 LTR ERVL 0 521 436 204 189 66 28 chr21 21138199 21138305 -13769265 + (TTAA)n Simple_repeat Simple_repeat 2 111 0 313 176 80 3 chr21 21138248 21138480 -13769090 + (TA)n Simple_repeat Simple_repeat 1 249 0 242 226 43 30 chr21 21138409 21138573 -13768997 + (TTTA)n Simple_repeat Simple_repeat 4 169 0 81 66 0 0 chr21 21138576 21138727 -13768843 + AT_rich Low_complexity Low_complexity 1 151 0 416 200 13 0 chr21 21138993 21139068 -13768502 - MER81 DNA DNA 0 114 39 496 215 0 66 chr21 21140127 21140223 -13767347 + AluJ SINE Alu 17 105 -207 2426 96 73 14 chr21 21140223 21140567 -13767003 - THE1B LTR MaLR 0 364 1 496 215 0 66 chr21 21140567 21140591 -13766979 + AluJ SINE Alu 105 129 -183 2283 146 65 28 chr21 21141679 21141723 -13765847 - MLT2C2 LTR ERVL -14 450 409 323 44 22 0 chr21 21141723 21141768 -13765802 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 2283 146 65 28 chr21 21141768 21142155 -13765415 - MLT2C2 LTR ERVL -55 409 3 2202 128 0 0 chr21 21142273 21142570 -13765000 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr21 21143180 21143201 -13764369 + AT_rich Low_complexity Low_complexity 1 21 0 1074 84 0 123 chr21 21143201 21143404 -13764166 - L1PA11 LINE L1 -3 6171 5994 2128 144 0 10 chr21 21143417 21143723 -13763847 - AluSx SINE Alu -9 303 1 552 239 25 92 chr21 21144399 21144637 -13762933 - MIR SINE MIR 0 262 41 236 271 12 0 chr21 21145294 21145379 -13762191 + A-rich Low_complexity Low_complexity 4 89 0 294 264 46 46 chr21 21145500 21145697 -13761873 + L1MEd LINE L1 860 1056 -5063 1391 212 134 44 chr21 21145881 21146358 -13761212 - MLT2B1 LTR ERVL 0 520 1 541 263 68 19 chr21 21146506 21146711 -13760859 + MIR SINE MIR 17 231 -31 1040 184 11 0 chr21 21146980 21147159 -13760411 + MER20 DNA MER1_type 39 219 0 967 144 26 0 chr21 21147273 21147426 -13760144 + AluJ SINE Alu 137 293 -9 1431 148 24 81 chr21 21148228 21148525 -13759045 + AluJo SINE Alu 14 293 -19 288 0 0 0 chr21 21149281 21149313 -13758257 + (A)n Simple_repeat Simple_repeat 1 32 0 1782 170 0 10 chr21 21150078 21150378 -13757192 - AluJo SINE Alu -15 297 1 210 286 143 19 chr21 21150968 21151073 -13756497 - L2 LINE L2 -6 3266 3149 235 328 104 8 chr21 21151072 21151197 -13756373 - L2 LINE L2 -2 3270 3134 1025 188 88 0 chr21 21151346 21151538 -13756032 + MER3 DNA MER1_type 1 209 0 792 297 64 40 chr21 21152266 21152451 -13755119 + HAL1 LINE L1 1 180 -2327 2197 173 47 87 chr21 21152451 21153028 -13754542 + MLT2B3 LTR ERVL 1 554 0 792 297 64 40 chr21 21153028 21153246 -13754324 + HAL1 LINE L1 180 414 -2093 623 283 83 46 chr21 21153248 21153707 -13753863 + HAL1 LINE L1 550 1030 -1477 5414 139 42 30 chr21 21153708 21154877 -13752693 - L1MA7 LINE L1 0 6291 5111 1652 243 99 35 chr21 21154943 21155580 -13751990 + HAL1 LINE L1 1121 1798 -709 308 229 239 0 chr21 21155626 21155735 -13751835 + HAL1 LINE L1 1885 2019 -488 1678 159 21 24 chr21 21155943 21156232 -13751338 + AluJo SINE Alu 15 302 -10 975 268 42 38 chr21 21156241 21156424 -13751146 - MER93a LTR ERV1 -28 374 188 2554 134 41 12 chr21 21156424 21156835 -13750735 - MSTB LTR MaLR -3 423 1 975 268 42 38 chr21 21156835 21156964 -13750606 - MER93a LTR ERV1 -214 188 61 240 35 0 0 chr21 21157122 21157151 -13750419 + (TG)n Simple_repeat Simple_repeat 1 29 0 650 261 51 26 chr21 21157178 21157412 -13750158 + HAL1 LINE L1 2212 2451 -56 1596 181 7 36 chr21 21157424 21157728 -13749842 + AluJb SINE Alu 3 297 -15 22 0 0 0 chr21 21157785 21157807 -13749763 + AT_rich Low_complexity Low_complexity 1 22 0 1775 126 50 4 chr21 21158321 21158582 -13748988 - AluJb SINE Alu 0 312 40 622 257 60 33 chr21 21158977 21159277 -13748293 + L1MC5 LINE L1 7620 7927 -34 235 218 39 0 chr21 21159278 21159356 -13748214 + (TA)n Simple_repeat Simple_repeat 1 81 0 2178 106 10 3 chr21 21159385 21159677 -13747893 + AluSq SINE Alu 1 294 -19 260 311 82 41 chr21 21159705 21159827 -13747743 - MIR3 SINE MIR -50 158 32 453 173 71 31 chr21 21160117 21160244 -13747326 + L1ME4a LINE L1 5979 6110 -11 1977 118 70 0 chr21 21160268 21160555 -13747015 - AluSq SINE Alu -4 309 3 3495 101 11 2 chr21 21160561 21161035 -13746535 - MER1A DNA MER1_type -7 522 45 210 71 0 0 chr21 21161814 21161842 -13745728 + (TC)n Simple_repeat Simple_repeat 1 28 0 2311 103 7 0 chr21 21162263 21162563 -13745007 + AluSx SINE Alu 1 302 -10 2453 4 0 0 chr21 21163200 21163460 -13744110 - AluYa5 SINE Alu -1 310 51 2165 168 24 3 chr21 21163600 21163982 -13743588 + MLT1B LTR MaLR 1 390 0 253 313 0 0 chr21 21163983 21164050 -13743520 - MIR SINE MIR -61 147 81 2453 78 0 19 chr21 21164053 21164372 -13743198 - AluSp SINE Alu 0 313 1 321 282 98 31 chr21 21164660 21164823 -13742747 + MER5B DNA MER1_type 2 175 -3 1827 180 19 26 chr21 21165503 21165569 -13742001 - MLT1F LTR MaLR -2 540 475 2173 128 3 0 chr21 21165569 21165867 -13741703 + AluSc SINE Alu 1 299 -10 1827 180 19 26 chr21 21165867 21166178 -13741392 - MLT1F LTR MaLR -67 475 166 673 96 0 0 chr21 21166186 21166280 -13741290 - AluSg/x SINE Alu -6 303 210 201 231 0 0 chr21 21166828 21166867 -13740703 - L2 LINE L2 -21 3251 3213 252 243 109 36 chr21 21166895 21167034 -13740536 - MIR3 SINE MIR -64 144 3 2761 77 22 0 chr21 21167119 21167484 -13740086 + THE1C LTR MaLR 1 373 -2 1389 146 0 0 chr21 21167836 21168042 -13739528 + MER2 DNA MER2_type 1 206 -138 1520 171 56 115 chr21 21168148 21168610 -13738960 - MLT1C LTR MaLR -32 435 1 867 200 19 0 chr21 21169230 21169385 -13738185 + MLT1F LTR MaLR 1 158 -384 1844 140 41 0 chr21 21169395 21169666 -13737904 + AluJb SINE Alu 1 282 -30 192 77 0 0 chr21 21169667 21169693 -13737877 + (CA)n Simple_repeat Simple_repeat 1 26 0 2354 97 0 7 chr21 21169781 21170081 -13737489 + AluSg SINE Alu 1 298 -12 924 203 23 55 chr21 21170110 21170327 -13737243 + MER20 DNA MER1_type 10 219 0 2439 157 76 9 chr21 21171198 21171631 -13735939 - MLT1C LTR MaLR -5 462 1 246 195 0 0 chr21 21172336 21172377 -13735193 + Alu SINE Alu 129 169 -133 1051 106 0 14 chr21 21172464 21172599 -13734971 + AluJb SINE Alu 1 134 -173 1720 188 7 3 chr21 21172599 21172908 -13734662 + AluSx SINE Alu 1 310 -2 2166 114 4 0 chr21 21173329 21173654 -13733916 - AluJb SINE Alu 0 326 1 800 211 11 32 chr21 21173927 21174112 -13733458 - MER5A DNA MER1_type -4 185 5 1782 174 3 0 chr21 21174424 21174705 -13732865 + AluJo SINE Alu 1 283 -24 234 0 0 0 chr21 21174705 21174731 -13732839 + (CACAA)n Simple_repeat Simple_repeat 2 27 0 228 86 0 0 chr21 21175453 21175488 -13732082 + (TG)n Simple_repeat Simple_repeat 1 35 0 603 276 84 25 chr21 21175623 21175862 -13731708 + MIR SINE MIR 6 258 -4 320 233 121 35 chr21 21176918 21177034 -13730536 + MIR SINE MIR 51 176 -86 989 167 6 0 chr21 21177035 21177191 -13730379 + FRAM SINE Alu 1 155 -21 383 195 12 0 chr21 21177194 21177276 -13730294 + MIR SINE MIR 168 250 -12 5303 168 24 5 chr21 21177618 21178860 -13728710 - L1MB8 LINE L1 -1 6177 4904 4007 110 4 9 chr21 21178868 21179423 -13728147 + MER41A LTR ERV1 3 554 0 1145 241 54 15 chr21 21180131 21180555 -13727015 - MLT1J LTR MaLR -7 504 25 180 0 0 0 chr21 21180962 21180982 -13726588 + (T)n Simple_repeat Simple_repeat 1 20 0 2215 107 0 19 chr21 21183342 21183650 -13723920 - AluSg SINE Alu -8 302 1 235 342 0 0 chr21 21185773 21185846 -13721724 + GA-rich Low_complexity Low_complexity 3 75 0 403 125 47 0 chr21 21186367 21186431 -13721139 + MER53 DNA DNA 5 71 -118 1820 182 3 10 chr21 21186859 21187161 -13720409 + AluJo SINE Alu 1 300 -12 453 260 24 8 chr21 21188461 21188588 -13718982 - MER91A DNA MER1_type -67 129 1 1990 138 3 3 chr21 21189306 21189589 -13717981 - AluJo SINE Alu -29 283 1 430 242 100 55 chr21 21190879 21191209 -13716361 - HAL1 LINE L1 -1363 1144 800 475 240 46 46 chr21 21191278 21191453 -13716117 + L2 LINE L2 3134 3308 -5 502 226 36 22 chr21 21191726 21191863 -13715707 + MIR SINE MIR 77 215 -47 2241 119 0 0 chr21 21192060 21192354 -13715216 + AluSx SINE Alu 3 296 -16 846 145 13 33 chr21 21193174 21193348 -13714222 + FRAM SINE Alu 1 168 0 1655 151 50 17 chr21 21193766 21194065 -13713505 + AluJo SINE Alu 1 309 -3 4307 73 7 0 chr21 21194110 21194659 -13712911 + MER41A LTR ERV1 2 554 0 486 236 45 25 chr21 21194777 21194934 -13712636 - L1ME4a LINE L1 -257 5864 5705 820 148 0 0 chr21 21195023 21195151 -13712419 + MER2 DNA MER2_type 46 173 -171 222 37 0 0 chr21 21195190 21195217 -13712353 + (CA)n Simple_repeat Simple_repeat 2 28 0 2215 230 83 17 chr21 21195992 21196592 -13710978 - L1MC4a LINE L1 -12 7796 7157 1830 169 14 20 chr21 21196953 21197301 -13710269 - MER31A LTR ERV1 0 485 140 2607 109 10 49 chr21 21197303 21197505 -13710065 + MER50 LTR ERV1 2 181 -553 2298 103 0 13 chr21 21197505 21197805 -13709765 - AluSx SINE Alu -14 298 3 2607 109 10 49 chr21 21197805 21198013 -13709557 + MER50 LTR ERV1 181 396 -338 908 206 72 55 chr21 21198026 21198318 -13709252 - LTR9 LTR ERV1 0 612 316 1762 182 12 77 chr21 21198285 21198702 -13708868 - LTR9 LTR ERV1 -222 390 1 587 202 0 0 chr21 21198702 21198804 -13708766 + MER50 LTR ERV1 405 506 -228 619 73 34 7 chr21 21198812 21199046 -13708524 - AluY SINE Alu -15 296 1 1306 152 24 0 chr21 21199047 21199258 -13708312 + MER50 LTR ERV1 505 720 -14 771 195 13 25 chr21 21199253 21199412 -13708158 - MER31B LTR ERV1 -309 157 1 2355 92 23 0 chr21 21200889 21201192 -13706378 + AluSq SINE Alu 1 310 -3 653 286 78 66 chr21 21202324 21202682 -13704888 - L1MC4a LINE L1 -298 5823 5471 1746 178 0 26 chr21 21203890 21204199 -13703371 + AluJb SINE Alu 4 304 -8 2229 132 0 0 chr21 21205447 21205758 -13701812 - AluSx SINE Alu -1 311 1 1791 250 62 20 chr21 21206041 21206585 -13700985 + MER69 DNA AcHobo 1 567 -659 696 192 31 21 chr21 21206571 21206624 -13700946 + MER69 DNA AcHobo 2276 2327 -199 375 23 0 0 chr21 21206624 21206668 -13700902 + (CA)n Simple_repeat Simple_repeat 1 44 0 696 192 31 21 chr21 21206668 21206807 -13700763 + MER69 DNA AcHobo 2327 2470 -56 885 172 0 0 chr21 21207800 21207980 -13699590 + (TG)n Simple_repeat Simple_repeat 1 180 0 598 183 22 32 chr21 21209672 21209991 -13697579 + GA-rich Low_complexity Low_complexity 1 316 0 399 132 0 0 chr21 21211872 21211940 -13695630 + (TCCCC)n Simple_repeat Simple_repeat 1 68 0 435 258 71 7 chr21 21212084 21212239 -13695331 - L1MC4a LINE L1 -1963 5845 5681 27 0 0 0 chr21 21212777 21212804 -13694766 + AT_rich Low_complexity Low_complexity 1 27 0 770 98 0 49 chr21 21212804 21212927 -13694643 - AluJo SINE Alu -177 135 19 550 143 0 18 chr21 21213178 21213290 -13694280 + (TCCCC)n Simple_repeat Simple_repeat 2 111 0 33 0 0 0 chr21 21213549 21213582 -13693988 + AT_rich Low_complexity Low_complexity 1 33 0 1754 247 57 8 chr21 21213649 21213865 -13693705 + L1MC4 LINE L1 6614 6818 -1224 1946 185 53 22 chr21 21213865 21214282 -13693288 - MSTB1 LTR MaLR -2 430 1 1754 247 57 8 chr21 21214282 21214575 -13692995 + L1MC4 LINE L1 6818 7148 -894 822 126 67 22 chr21 21214597 21214732 -13692838 - FLAM_C SINE Alu -2 141 1 401 149 0 15 chr21 21214733 21214800 -13692770 + MLT1C LTR MaLR 402 467 0 4192 186 27 12 chr21 21214800 21215623 -13691947 + L1MB8 LINE L1 5343 6177 -1 1297 291 76 37 chr21 21215620 21216320 -13691250 + L1MC4 LINE L1 7135 7905 -137 342 0 0 0 chr21 21216320 21216358 -13691212 + (TG)n Simple_repeat Simple_repeat 2 39 0 1297 291 76 37 chr21 21216358 21216487 -13691083 + L1MC4 LINE L1 7905 8028 -14 2404 118 27 3 chr21 21217433 21217799 -13689771 - THE1C LTR MaLR 0 375 1 1832 179 31 8 chr21 21217960 21218317 -13689253 - MLT1A1 LTR MaLR 0 365 1 689 231 26 13 chr21 21219774 21219930 -13687640 - MLT1C LTR MaLR 0 467 310 2165 134 0 0 chr21 21220084 21220382 -13687188 + AluJb SINE Alu 1 298 -14 214 242 0 0 chr21 21221157 21221223 -13686347 + T-rich Low_complexity Low_complexity 6 71 0 6533 106 20 9 chr21 21222098 21223269 -13684301 - L1PB1 LINE L1 0 6151 4959 244 107 36 89 chr21 21223493 21223549 -13684021 - MER67D LTR ERV1 -313 201 149 1855 180 13 32 chr21 21223590 21223962 -13683608 - MLT1A1 LTR MaLR 0 365 1 1401 242 51 20 chr21 21225010 21225555 -13682015 + L1MC5 LINE L1 7356 7917 -44 535 208 16 32 chr21 21225778 21225903 -13681667 + L2 LINE L2 3191 3313 0 24 32 0 0 chr21 21226229 21226260 -13681310 + AT_rich Low_complexity Low_complexity 1 31 0 4121 186 22 39 chr21 21226270 21226369 -13681201 + MER21B LTR ERV1 2 101 -762 4085 189 30 50 chr21 21226369 21227357 -13680213 + LTR5 LTR ERVK 1 969 0 4121 186 22 39 chr21 21227357 21227683 -13679887 + MER21B LTR ERV1 101 431 -432 2306 89 10 119 chr21 21227683 21228087 -13679483 + THE1B LTR MaLR 5 364 0 4121 186 22 39 chr21 21228087 21228473 -13679097 + MER21B LTR ERV1 431 800 -63 3116 225 79 21 chr21 21228748 21229644 -13677926 + L1M4 LINE L1 3696 4643 -1503 404 15 45 15 chr21 21229655 21229721 -13677849 + (CA)n Simple_repeat Simple_repeat 2 69 0 642 276 57 58 chr21 21230284 21230791 -13676779 - MLT1J LTR MaLR -6 505 1 26 0 0 0 chr21 21231125 21231151 -13676419 + AT_rich Low_complexity Low_complexity 1 26 0 203 312 50 0 chr21 21231431 21231511 -13676059 + L2 LINE L2 3185 3268 -4 635 128 120 0 chr21 21231514 21231631 -13675939 - L1MA4A LINE L1 -149 6154 6024 587 261 94 30 chr21 21231897 21232131 -13675439 + MIR SINE MIR 1 249 -13 296 315 42 28 chr21 21232188 21232331 -13675239 - MIR SINE MIR -71 191 47 2219 116 0 3 chr21 21232648 21232949 -13674621 - AluSg SINE Alu -10 300 1 334 298 127 29 chr21 21233002 21233247 -13674323 + MLT1K LTR MaLR 5 273 -315 960 155 0 0 chr21 21233293 21233435 -13674135 + FRAM SINE Alu 1 141 -35 1099 186 2 27 chr21 21233652 21233908 -13673662 - L1M2 LINE L1 -657 5514 5270 2486 213 77 16 chr21 21233971 21234248 -13673322 + MER76 LTR ERV 1 259 -429 2238 140 34 14 chr21 21234248 21234605 -13672965 + THE1B LTR MaLR 1 364 0 2486 213 77 16 chr21 21234605 21234974 -13672596 + MER76 LTR ERV 259 687 -1 1540 191 20 7 chr21 21235440 21235734 -13671836 + MLT1A1 LTR MaLR 1 298 -67 1929 113 38 0 chr21 21235734 21235999 -13671571 - AluSx SINE Alu -37 275 1 388 271 98 0 chr21 21236140 21236273 -13671297 + MLT1K LTR MaLR 200 345 -243 269 324 118 0 chr21 21236436 21236538 -13671032 - L2 LINE L2 -1 3312 3199 407 230 50 86 chr21 21237092 21237231 -13670339 + MIR SINE MIR 36 169 -93 192 196 65 22 chr21 21237334 21237380 -13670190 + MER5A DNA MER1_type 142 189 0 373 198 25 0 chr21 21237876 21237957 -13669613 + MLT1K LTR MaLR 507 589 -6 711 289 75 9 chr21 21239710 21239938 -13667632 - MIR SINE MIR -13 249 7 201 326 21 92 chr21 21240731 21240952 -13666618 + L2 LINE L2 2383 2581 -733 2644 98 13 10 chr21 21240952 21241341 -13666229 - MLT1B LTR MaLR 0 390 1 201 326 21 92 chr21 21241341 21241401 -13666169 + L2 LINE L2 2581 2644 -670 272 155 0 17 chr21 21241411 21241469 -13666101 + L1ME4a LINE L1 6062 6118 -3 2281 129 49 33 chr21 21241776 21242201 -13665369 + MSTB1 LTR MaLR 1 432 0 344 296 43 31 chr21 21242696 21242858 -13664712 - LTR33 LTR ERVL 0 521 358 1276 218 53 72 chr21 21243191 21243660 -13663910 - MLT1C LTR MaLR -7 460 1 265 246 0 0 chr21 21243891 21243952 -13663618 - L1P LINE L1 -3570 2576 2516 520 159 35 9 chr21 21244002 21244115 -13663455 - L1 LINE L1 -3630 2516 2401 1130 266 25 28 chr21 21244409 21244763 -13662807 + MLT1J LTR MaLR 1 353 -158 1049 276 77 33 chr21 21245624 21246076 -13661494 - MLT1J LTR MaLR -37 474 3 252 246 0 29 chr21 21246210 21246279 -13661291 + L2 LINE L2 3239 3305 -8 549 274 43 35 chr21 21246586 21246816 -13660754 + L1MC/D LINE L1 5522 5753 -2055 305 237 92 23 chr21 21246889 21247020 -13660550 + MLT1J LTR MaLR 326 465 -46 2297 99 7 0 chr21 21247802 21248094 -13659476 - AluSx SINE Alu -18 294 1 442 68 0 27 chr21 21248487 21248560 -13659010 + (TTCC)n Simple_repeat Simple_repeat 1 71 0 210 254 34 0 chr21 21249662 21249721 -13657849 - MER5A DNA MER1_type -83 106 46 22 56 0 0 chr21 21250073 21250109 -13657461 + GC_rich Low_complexity Low_complexity 1 36 0 227 221 74 95 chr21 21251589 21251684 -13655886 + MIR SINE MIR 103 195 -67 339 281 82 15 chr21 21252272 21252407 -13655163 + MIR SINE MIR 87 230 -32 195 170 0 0 chr21 21255924 21255971 -13651599 + C-rich Low_complexity Low_complexity 1 47 0 311 160 13 0 chr21 21256788 21256863 -13650707 + CT-rich Low_complexity Low_complexity 1 76 0 227 184 0 20 chr21 21257595 21257644 -13649926 + (CCG)n Simple_repeat Simple_repeat 1 48 0 29 28 0 0 chr21 21257730 21257766 -13649804 + GC_rich Low_complexity Low_complexity 1 36 0 2028 135 3 25 chr21 21261420 21261738 -13645832 + AluSp SINE Alu 1 311 -2 624 233 30 36 chr21 21262924 21263090 -13644480 - MIR SINE MIR -51 211 48 24 32 0 0 chr21 21263299 21263330 -13644240 + GC_rich Low_complexity Low_complexity 1 31 0 253 204 75 43 chr21 21265177 21265270 -13642300 + MIR SINE MIR 96 191 -71 405 237 87 18 chr21 21265460 21265598 -13641972 + MIR SINE MIR 49 187 -21 2272 110 10 7 chr21 21265979 21266287 -13641283 - AluSx SINE Alu -3 309 1 1971 182 49 2 chr21 21266897 21267303 -13640267 - L1MB5 LINE L1 0 6174 5750 269 336 36 18 chr21 21267413 21267523 -13640047 + MIR3 SINE MIR 90 201 -7 2230 92 49 0 chr21 21268500 21268784 -13638786 - AluSq SINE Alu -15 298 1 500 256 142 33 chr21 21268808 21269019 -13638551 + L2 LINE L2 3079 3312 -1 3328 113 4 2 chr21 21270142 21270646 -13636924 - L1PA15 LINE L1 0 6165 5661 844 303 133 3 chr21 21271863 21272193 -13635377 - MLT1J LTR MaLR -102 409 37 190 289 165 33 chr21 21272378 21272499 -13635071 - MIR SINE MIR 0 262 126 1035 203 35 0 chr21 21273429 21273631 -13633939 + MER3 DNA MER1_type 1 209 0 1088 191 19 0 chr21 21274328 21274543 -13633027 - MER20 DNA MER1_type 0 219 1 875 164 0 0 chr21 21275131 21275290 -13632280 - L1MD3 LINE L1 0 7995 7837 1511 186 79 4 chr21 21275290 21275646 -13631924 + AluJb SINE Alu 1 377 0 605 182 13 62 chr21 21275646 21275822 -13631748 - L1MD3 LINE L1 -142 7853 7594 2469 46 0 3 chr21 21276843 21277149 -13630421 + AluY SINE Alu 1 305 0 198 256 24 37 chr21 21277736 21277818 -13629752 - L2 LINE L2 -215 3057 2977 262 298 50 1 chr21 21277952 21278046 -13629524 + MER5A DNA MER1_type 54 164 -25 233 274 65 0 chr21 21279122 21279184 -13628386 - L2 LINE L2 0 3313 3248 343 197 8 114 chr21 21279557 21279645 -13627925 + L1MB2 LINE L1 6047 6118 -53 2494 79 0 0 chr21 21279645 21279948 -13627622 + AluY SINE Alu 1 303 -8 343 197 8 114 chr21 21279948 21279991 -13627579 + L1MB2 LINE L1 6118 6164 -7 519 244 81 47 chr21 21280722 21280894 -13626676 + MER45A DNA AcHobo 1 178 0 436 51 64 90 chr21 21281177 21281223 -13626347 + MADE1 DNA Mariner 5 51 -29 2335 89 0 0 chr21 21281223 21281544 -13626026 - AluSx SINE Alu 0 321 1 436 51 64 90 chr21 21281544 21281574 -13625996 + MADE1 DNA Mariner 51 80 0 204 97 0 0 chr21 21281817 21281848 -13625722 + (CCCCCA)n Simple_repeat Simple_repeat 6 36 0 1499 194 0 78 chr21 21282837 21283224 -13624346 - MLT1B LTR MaLR 0 390 34 431 279 36 55 chr21 21285359 21285524 -13622046 - MLT1H LTR MaLR 0 590 434 435 271 17 41 chr21 21285715 21285957 -13621613 - MLT1H LTR MaLR -299 247 4 845 129 7 50 chr21 21286574 21286714 -13620856 + AluJo SINE Alu 1 134 -178 317 232 0 0 chr21 21286772 21286841 -13620729 - L2 LINE L2 -1 3312 3244 320 349 45 27 chr21 21286868 21287160 -13620410 - L2 LINE L2 -205 3108 2812 189 0 0 0 chr21 21287208 21287229 -13620341 + (TC)n Simple_repeat Simple_repeat 1 21 0 303 226 52 0 chr21 21287637 21287752 -13619818 - MER115 DNA AcHobo -539 154 34 319 225 56 34 chr21 21289544 21289633 -13617937 + MIR SINE MIR 117 207 -55 446 172 30 20 chr21 21290179 21290278 -13617292 + MER5A DNA MER1_type 6 105 -84 201 266 38 51 chr21 21290907 21290986 -13616584 - L2 LINE L2 -340 2974 2897 319 193 53 0 chr21 21291336 21291393 -13616177 + MER5A DNA MER1_type 9 68 -121 963 204 0 0 chr21 21291408 21291575 -13615995 + FAM SINE Alu 1 46 -3 438 309 34 0 chr21 21291759 21291908 -13615662 - MIR SINE MIR -92 170 17 2286 137 31 62 chr21 21291934 21292264 -13615306 - MLT1C LTR MaLR 0 467 155 2650 31 0 9 chr21 21292264 21292582 -13614988 + L1PA5 LINE L1 5840 6154 0 2286 137 31 62 chr21 21292582 21292733 -13614837 - MLT1C LTR MaLR -312 155 1 684 283 27 5 chr21 21292776 21292960 -13614610 - MIR SINE MIR -44 218 31 255 61 0 0 chr21 21293036 21293069 -13614501 + (TTCC)n Simple_repeat Simple_repeat 4 36 0 2499 84 10 0 chr21 21293069 21293379 -13614191 - AluSq SINE Alu 0 313 1 247 244 0 0 chr21 21293689 21293734 -13613836 + MIR SINE MIR 218 262 0 459 224 20 88 chr21 21293740 21293796 -13613774 - MIR SINE MIR -14 248 190 1662 185 44 0 chr21 21293796 21294094 -13613476 - AluJb SINE Alu -1 311 1 459 224 20 88 chr21 21294094 21294184 -13613386 - MIR SINE MIR -72 190 112 2190 128 7 3 chr21 21295645 21295951 -13611619 + AluSx SINE Alu 1 307 -5 303 28 0 0 chr21 21296016 21296052 -13611518 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr21 21296115 21296136 -13611434 + AT_rich Low_complexity Low_complexity 1 21 0 2403 123 42 68 chr21 21299378 21299874 -13607696 + L1MB2 LINE L1 5689 6171 0 357 75 0 0 chr21 21300438 21300491 -13607079 + (TCC)n Simple_repeat Simple_repeat 1 53 0 21 82 0 0 chr21 21300554 21300603 -13606967 + GC_rich Low_complexity Low_complexity 1 49 0 261 210 17 50 chr21 21300846 21300965 -13606605 + (CCGCG)n Simple_repeat Simple_repeat 3 117 0 22 35 0 0 chr21 21301015 21301044 -13606526 + GC_rich Low_complexity Low_complexity 1 29 0 284 226 0 0 chr21 21306814 21306867 -13600703 - MIR SINE MIR -100 162 110 213 177 32 32 chr21 21307199 21307261 -13600309 + T-rich Low_complexity Low_complexity 4 65 0 369 75 0 0 chr21 21307577 21307630 -13599940 + (TGG)n Simple_repeat Simple_repeat 3 55 0 468 254 100 0 chr21 21308214 21308344 -13599226 + MIR SINE MIR 82 224 -38 1949 162 0 13 chr21 21308458 21308761 -13598809 + AluJb SINE Alu 1 299 -13 211 189 19 75 chr21 21309396 21309449 -13598121 - L2 LINE L2 0 3313 3264 378 107 0 0 chr21 21309577 21309633 -13597937 + (GGGAA)n Simple_repeat Simple_repeat 4 59 0 602 178 0 17 chr21 21309855 21309964 -13597606 + MER96B DNA MER1_type? 9 117 -300 2124 97 29 4 chr21 21309964 21310242 -13597328 + AluSq SINE Alu 1 285 -28 256 241 17 0 chr21 21310269 21310385 -13597185 + (TA)n Simple_repeat Simple_repeat 2 119 0 464 125 94 10 chr21 21310385 21310481 -13597089 + MER96B DNA MER1_type? 114 217 -200 380 281 96 7 chr21 21310684 21310830 -13596740 + MIR SINE MIR 15 173 -89 2303 110 0 0 chr21 21311887 21312179 -13595391 + AluSx SINE Alu 1 292 -20 1965 122 37 0 chr21 21312493 21312808 -13594762 - AluSc SINE Alu 0 325 1 1028 158 13 0 chr21 21313143 21313301 -13594269 - FRAM SINE Alu -6 160 1 2130 130 7 3 chr21 21313563 21313864 -13593706 - AluSx SINE Alu -9 303 2 1300 208 44 22 chr21 21315041 21315358 -13592212 + MER33 DNA MER1_type 1 324 0 306 50 0 0 chr21 21315421 21315461 -13592109 + (TC)n Simple_repeat Simple_repeat 2 41 0 751 234 101 0 chr21 21315551 21315739 -13591831 + MER63A DNA MER1_type 1 207 -3 253 341 66 6 chr21 21316058 21316240 -13591330 + LTR67 LTR ERVL 325 517 -40 2903 148 29 18 chr21 21316399 21316568 -13591002 + L1MB3 LINE L1 5655 5821 -362 2435 97 0 0 chr21 21316568 21316878 -13590692 + AluSg SINE Alu 1 310 0 2903 148 29 18 chr21 21316878 21317221 -13590349 + L1MB3 LINE L1 5821 6173 -10 1564 164 63 7 chr21 21317239 21317508 -13590062 + AluJo SINE Alu 3 286 -26 1956 157 39 40 chr21 21319559 21320111 -13587459 - MLT2A2 LTR ERVL 0 554 1 2270 110 0 19 chr21 21320145 21320455 -13587115 - AluSx SINE Alu -8 304 1 2304 96 0 0 chr21 21321512 21321822 -13585748 - AluSq SINE Alu 0 310 1 1669 152 38 4 chr21 21322003 21322266 -13585304 + AluJb SINE Alu 40 311 -1 2160 134 16 0 chr21 21322600 21322907 -13584663 - AluSx SINE Alu 0 312 1 331 321 41 5 chr21 21323373 21323569 -13584001 + L1ME4a LINE L1 5701 5903 -218 244 237 43 0 chr21 21323590 21323683 -13583887 + L1ME4a LINE L1 5995 6091 -30 778 198 12 0 chr21 21324143 21324310 -13583260 + L1MC3 LINE L1 7615 7783 -2 2296 64 11 4 chr21 21324486 21324790 -13582780 + AluSp SINE Alu 1 306 0 32 0 0 0 chr21 21324930 21324962 -13582608 + AT_rich Low_complexity Low_complexity 1 32 0 195 186 0 0 chr21 21326243 21326286 -13581284 + T-rich Low_complexity Low_complexity 3 45 0 219 36 0 0 chr21 21326286 21326314 -13581256 + (TG)n Simple_repeat Simple_repeat 1 28 0 410 366 30 51 chr21 21327006 21327134 -13580436 + L1MC4a LINE L1 5581 5710 -2098 1656 164 10 45 chr21 21327134 21327297 -13580273 - AluJo SINE Alu -13 299 151 2537 69 3 3 chr21 21327297 21327603 -13579967 - AluY SINE Alu -5 306 1 1656 164 10 45 chr21 21327603 21327749 -13579821 - AluJo SINE Alu -161 151 1 410 366 30 51 chr21 21327749 21327956 -13579614 + L1MC4a LINE L1 5710 5909 -1899 276 224 64 64 chr21 21327971 21328127 -13579443 + L1ME4a LINE L1 5955 6110 -11 27 0 0 0 chr21 21328135 21328162 -13579408 + AT_rich Low_complexity Low_complexity 1 27 0 911 129 8 0 chr21 21328853 21328985 -13578585 + AluSq/x SINE Alu 1 133 -180 2234 117 3 0 chr21 21328990 21329289 -13578281 + AluSx SINE Alu 1 300 -12 1888 86 63 8 chr21 21329682 21329950 -13577620 - AluSx SINE Alu -24 288 6 1402 123 123 4 chr21 21330150 21330418 -13577152 - L1MA3 LINE L1 0 6305 6006 371 234 76 25 chr21 21330446 21330604 -13576966 - L1ME4a LINE L1 -1 6120 5955 1942 151 3 13 chr21 21330910 21331222 -13576348 + AluJb SINE Alu 1 309 -3 446 297 39 47 chr21 21332419 21332541 -13575029 + MIR SINE MIR 32 153 -109 2419 97 3 0 chr21 21332541 21332850 -13574720 + AluY SINE Alu 1 310 -1 446 297 39 47 chr21 21332850 21332959 -13574611 + MIR SINE MIR 153 261 -1 319 233 58 0 chr21 21332991 21333094 -13574476 + L1ME4a LINE L1 6011 6119 -2 1821 154 0 14 chr21 21333565 21333857 -13573713 + AluJb SINE Alu 11 298 -14 218 191 24 0 chr21 21334289 21334331 -13573239 - MIR SINE MIR -161 101 59 1069 246 87 54 chr21 21334478 21334926 -13572644 - MLT1C LTR MaLR 0 467 5 304 322 61 50 chr21 21335049 21335509 -13572061 + L2 LINE L2 1246 1710 -1604 400 285 87 17 chr21 21335667 21335839 -13571731 + L2 LINE L2 1904 2087 -1227 337 274 122 43 chr21 21335980 21336210 -13571360 + L2 LINE L2 2271 2518 -796 2658 43 0 0 chr21 21337043 21337347 -13570223 + AluY SINE Alu 1 304 -7 234 0 0 0 chr21 21337388 21337414 -13570156 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 518 323 71 5 chr21 21337552 21337750 -13569820 + MIR SINE MIR 13 223 -39 720 172 55 16 chr21 21337833 21337961 -13569609 - FLAM_A SINE Alu 0 133 1 668 149 25 106 chr21 21338969 21339069 -13568501 + MER5B DNA MER1_type 25 110 -68 2205 82 7 0 chr21 21339069 21339379 -13568191 - AluSp SINE Alu 0 312 1 668 149 25 106 chr21 21339379 21339438 -13568132 + MER5B DNA MER1_type 110 172 -6 347 298 121 16 chr21 21340484 21340608 -13566962 + MIR3 SINE MIR 18 154 -54 835 245 16 0 chr21 21340981 21341165 -13566405 - MIR SINE MIR -26 236 50 180 111 0 0 chr21 21343671 21343698 -13563872 + (GA)n Simple_repeat Simple_repeat 2 28 0 1686 138 45 28 chr21 21344892 21345183 -13562387 - AluJo SINE Alu -16 296 1 185 0 40 0 chr21 21346694 21346719 -13560851 + (TTG)n Simple_repeat Simple_repeat 2 27 0 309 68 0 0 chr21 21347917 21347961 -13559609 + (CA)n Simple_repeat Simple_repeat 2 45 0 2319 110 0 0 chr21 21348661 21348960 -13558610 + AluSx SINE Alu 1 299 -13 2288 115 0 0 chr21 21349433 21349728 -13557842 + AluSx SINE Alu 1 295 -17 705 296 39 12 chr21 21350243 21350500 -13557070 + L1MC/D LINE L1 5522 5785 -2023 2065 157 0 0 chr21 21350589 21350895 -13556675 + AluJb SINE Alu 1 306 -6 431 230 115 36 chr21 21351379 21351518 -13556052 + MIR SINE MIR 31 180 -82 29 47 0 0 chr21 21351588 21351631 -13555939 + AT_rich Low_complexity Low_complexity 1 43 0 553 234 48 7 chr21 21352733 21352878 -13554692 - MIR SINE MIR -95 167 17 2145 119 0 29 chr21 21354295 21354606 -13552964 + AluSx SINE Alu 2 303 -9 189 94 0 0 chr21 21356940 21356972 -13550598 + (T)n Simple_repeat Simple_repeat 1 32 0 201 74 0 0 chr21 21356984 21357011 -13550559 + (TA)n Simple_repeat Simple_repeat 1 27 0 262 207 52 0 chr21 21358481 21358539 -13549031 - MIR SINE MIR -32 230 170 335 174 143 10 chr21 21359216 21359314 -13548256 + LTR37B LTR ERV1 93 203 -265 2358 92 0 0 chr21 21359329 21359675 -13547895 - AluSg SINE Alu 0 310 1 319 196 0 0 chr21 21359679 21359735 -13547835 - L1MC4 LINE L1 0 8042 7987 2103 262 65 19 chr21 21359739 21360483 -13547087 - L1MC4 LINE L1 -143 7899 7122 861 127 8 8 chr21 21360487 21360613 -13546957 - FLAM_C SINE Alu -17 126 1 1894 243 58 20 chr21 21360626 21361165 -13546405 - L1MC4a LINE L1 -788 7020 6462 24 0 0 0 chr21 21361192 21361216 -13546354 + AT_rich Low_complexity Low_complexity 1 24 0 3701 141 32 57 chr21 21362033 21362369 -13545201 + L1MB3 LINE L1 5451 5794 -389 1753 140 4 0 chr21 21362369 21362619 -13544951 + AluSx SINE Alu 56 306 -6 3701 141 32 57 chr21 21362619 21362924 -13544646 + L1MB3 LINE L1 5794 6105 -78 2268 108 10 0 chr21 21362924 21363229 -13544341 - AluSx SINE Alu -4 308 1 3701 141 32 57 chr21 21363229 21363289 -13544281 + L1MB3 LINE L1 6105 6135 -48 2306 114 0 0 chr21 21363289 21363596 -13543974 + AluSg SINE Alu 1 307 -3 3701 141 32 57 chr21 21363596 21363643 -13543927 + L1MB3 LINE L1 6135 6182 -1 227 333 49 0 chr21 21364375 21364456 -13543114 - MIR SINE MIR -74 188 104 598 259 25 19 chr21 21364605 21364763 -13542807 - MIR SINE MIR -31 231 73 2190 105 0 14 chr21 21365124 21365420 -13542150 + AluY SINE Alu 3 294 -17 25 0 0 0 chr21 21365705 21365730 -13541840 + AT_rich Low_complexity Low_complexity 1 25 0 2500 53 3 3 chr21 21366376 21366678 -13540892 - AluY SINE Alu -9 302 1 290 301 97 0 chr21 21367613 21367706 -13539864 - MIR SINE MIR -62 146 45 1855 169 3 22 chr21 21367716 21368029 -13539541 + AluJb SINE Alu 1 307 -5 2433 100 0 3 chr21 21368037 21368348 -13539222 + AluSq SINE Alu 1 310 -3 689 220 16 11 chr21 21368643 21368834 -13538736 + Charlie4a DNA MER1_type 275 466 -42 394 275 18 9 chr21 21370287 21370396 -13537174 - MIR3 SINE MIR -54 154 45 357 288 51 0 chr21 21370476 21370594 -13536976 + L2 LINE L2 3190 3313 0 2310 77 3 7 chr21 21371437 21371744 -13535826 - AluY SINE Alu 0 311 1 2115 133 39 33 chr21 21372099 21372459 -13535111 + THE1B LTR MaLR 1 362 -2 714 223 0 0 chr21 21373384 21373514 -13534056 + FLAM_A SINE Alu 1 130 -3 22 56 0 0 chr21 21373522 21373558 -13534012 + AT_rich Low_complexity Low_complexity 1 36 0 311 231 77 77 chr21 21373869 21374012 -13533558 - MLT1H LTR MaLR -8 541 399 376 257 133 0 chr21 21374301 21374406 -13533164 - MER5B DNA MER1_type 0 178 60 321 260 0 13 chr21 21374466 21374543 -13533027 + MER5B DNA MER1_type 8 83 -95 2225 117 16 0 chr21 21374570 21374877 -13532693 + AluSx SINE Alu 1 312 0 264 299 96 96 chr21 21374957 21375258 -13532312 - L2 LINE L2 -1 3271 2971 730 231 80 25 chr21 21375680 21375879 -13531691 - MER63A DNA MER1_type 0 210 1 968 179 85 0 chr21 21376748 21376949 -13530621 + LTR16C LTR ERVL 274 491 0 197 229 0 14 chr21 21377269 21377339 -13530231 + GA-rich Low_complexity Low_complexity 4 72 0 2164 118 10 0 chr21 21377432 21377728 -13529842 + AluSx SINE Alu 1 299 -13 2208 122 0 22 chr21 21378425 21378744 -13528826 + AluSx SINE Alu 1 312 0 2224 96 0 0 chr21 21380387 21380689 -13526881 - AluY SINE Alu -9 302 1 1820 157 7 0 chr21 21381158 21381444 -13526126 - AluJo SINE Alu -24 288 1 2190 90 7 0 chr21 21381492 21381791 -13525779 - AluSq SINE Alu -12 301 1 567 78 0 0 chr21 21381852 21381929 -13525641 + (GGGA)n Simple_repeat Simple_repeat 4 80 0 2114 114 0 0 chr21 21382996 21383294 -13524276 + AluSx SINE Alu 1 298 -14 844 192 0 0 chr21 21384334 21384480 -13523090 + FRAM SINE Alu 1 146 -30 29 0 0 25 chr21 21384483 21384506 -13523064 + AT_rich Low_complexity Low_complexity 1 24 -15 2081 123 0 16 chr21 21384506 21384815 -13522755 + AluSx SINE Alu 1 304 -8 29 0 0 25 chr21 21384815 21384831 -13522739 + AT_rich Low_complexity Low_complexity 24 39 0 1372 158 91 8 chr21 21384841 21385095 -13522475 + AluJo SINE Alu 2 276 -36 514 158 0 0 chr21 21385099 21385175 -13522395 + polypurine Low_complexity Low_complexity 1 76 0 688 171 29 5 chr21 21385175 21385394 -13522176 + GA-rich Low_complexity Low_complexity 1 224 0 303 245 29 29 chr21 21385395 21385497 -13522073 - L2 LINE L2 -165 3107 3006 183 305 119 0 chr21 21385568 21385627 -13521943 - L2 LINE L2 -2 3270 3205 914 196 0 6 chr21 21386085 21386264 -13521306 - AluSg/x SINE Alu -3 307 130 1815 147 31 0 chr21 21386275 21386568 -13521002 - AluSx SINE Alu -10 302 1 348 87 0 43 chr21 21387460 21387529 -13520041 + (TCC)n Simple_repeat Simple_repeat 3 68 0 205 67 33 0 chr21 21387531 21387561 -13520009 + (TC)n Simple_repeat Simple_repeat 1 31 0 45 34 0 0 chr21 21387822 21387881 -13519689 + AT_rich Low_complexity Low_complexity 1 59 0 1122 286 74 36 chr21 21388622 21389069 -13518501 + MLT1G1 LTR MaLR 14 477 -118 854 309 73 53 chr21 21389662 21390154 -13517416 - MLT1J LTR MaLR -6 505 4 1306 153 18 13 chr21 21391458 21391686 -13515884 + MSTB LTR MaLR 1 229 -197 1549 133 48 41 chr21 21391686 21391980 -13515590 - AluSx SINE Alu -16 296 1 213 65 0 0 chr21 21391982 21392013 -13515557 + (TC)n Simple_repeat Simple_repeat 2 32 0 1376 157 22 5 chr21 21392013 21392236 -13515334 + MSTB LTR MaLR 200 426 0 252 346 0 39 chr21 21393190 21393317 -13514253 - L2 LINE L2 -501 2813 2692 255 186 0 0 chr21 21393468 21393511 -13514059 + MIR SINE MIR 108 150 -112 344 165 60 30 chr21 21393778 21393911 -13513659 + (TA)n Simple_repeat Simple_repeat 2 138 0 225 0 0 0 chr21 21393932 21393957 -13513613 + (TG)n Simple_repeat Simple_repeat 1 25 0 802 278 64 59 chr21 21393961 21394490 -13513080 + MLT1G1 LTR MaLR 17 544 -5 210 171 0 0 chr21 21395577 21395612 -13511958 + T-rich Low_complexity Low_complexity 1 35 0 1482 172 36 10 chr21 21395904 21396206 -13511364 - AluJb SINE Alu 0 312 3 2207 93 0 28 chr21 21396210 21396567 -13511003 - AluSq SINE Alu 0 348 1 386 372 0 0 chr21 21396595 21396748 -13510822 + MIR SINE MIR 108 260 -2 1047 235 47 13 chr21 21396748 21397046 -13510524 + MLT1C LTR MaLR 7 314 -153 795 173 52 5 chr21 21397167 21397340 -13510230 + MLT1C LTR MaLR 303 467 0 1958 127 0 0 chr21 21397620 21397903 -13509667 + AluSx SINE Alu 1 283 -29 370 361 55 48 chr21 21398180 21398579 -13508991 - L2 LINE L2 -359 2955 2554 796 159 0 8 chr21 21398728 21398860 -13508710 + AluJo SINE Alu 6 136 -176 287 284 39 16 chr21 21398877 21399004 -13508566 - LTR16C LTR ERVL -114 377 248 1759 137 10 13 chr21 21399239 21399539 -13508031 + AluJo SINE Alu 1 299 -13 228 161 97 32 chr21 21400348 21400410 -13507160 - L1ME LINE L1 -510 5660 5595 343 249 30 67 chr21 21400488 21400653 -13506917 + L2 LINE L2 2925 3083 -189 313 259 98 0 chr21 21401251 21401363 -13506207 + LTR16C LTR ERVL 367 489 -2 340 247 26 0 chr21 21402536 21402613 -13504957 + L2 LINE L2 3193 3271 -1 533 263 110 0 chr21 21402782 21402991 -13504579 + L1MC5 LINE L1 7680 7911 -50 2305 73 0 3 chr21 21403524 21403826 -13503744 + AluSc SINE Alu 1 301 -8 1687 157 0 11 chr21 21404443 21404730 -13502840 + AluJb SINE Alu 1 284 -28 279 215 0 0 chr21 21404733 21404798 -13502772 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 326 346 15 8 chr21 21404906 21405036 -13502534 - MIR SINE MIR -59 203 73 1045 173 12 6 chr21 21405256 21405454 -13502116 - L1MC/D LINE L1 -571 5741 5566 3063 119 35 20 chr21 21405457 21405968 -13501602 + L1MA9 LINE L1 5791 6309 -3 1359 239 95 57 chr21 21406150 21406783 -13500787 + L2 LINE L2 2393 3037 -276 2281 138 75 39 chr21 21406783 21406964 -13500606 + MSTA LTR MaLR 2 175 -253 2458 49 0 0 chr21 21406964 21407269 -13500301 + AluY SINE Alu 1 305 -6 2281 138 75 39 chr21 21407269 21407499 -13500071 + MSTA LTR MaLR 175 428 0 1359 239 95 57 chr21 21407499 21407615 -13499955 + L2 LINE L2 3037 3147 -166 378 266 49 75 chr21 21407675 21408239 -13499331 + L1MC4 LINE L1 7238 7893 -149 390 183 0 0 chr21 21408260 21408320 -13499250 + AluJ/FLAM SINE Alu 1 60 -242 690 168 0 23 chr21 21408390 21408545 -13499025 + FRAM SINE Alu 1 40 0 690 177 91 2 chr21 21408561 21408707 -13498863 - L1ME1 LINE L1 0 6178 6017 192 348 119 17 chr21 21408792 21408910 -13498660 - L2 LINE L2 -928 2386 2257 309 179 18 0 chr21 21408925 21408981 -13498589 - LTR16C LTR ERVL -18 473 417 2208 114 0 0 chr21 21409031 21409338 -13498232 + AluSx SINE Alu 1 307 -5 290 287 92 0 chr21 21409640 21409727 -13497843 + L2 LINE L2 2644 2738 -576 639 130 83 9 chr21 21409728 21409836 -13497734 + L1M4 LINE L1 5564 5679 -499 473 168 21 21 chr21 21409837 21409932 -13497638 - MSTC LTR MaLR -333 95 1 1129 118 0 0 chr21 21410016 21410185 -13497385 + L1PBa LINE L1 1 169 -6694 1495 167 68 15 chr21 21410188 21410512 -13497058 + MLT1A1 LTR MaLR 17 357 -8 382 248 41 48 chr21 21410976 21411121 -13496449 - Charlie8 DNA MER1_type -1926 491 348 555 75 0 97 chr21 21411131 21411224 -13496346 + L1PB1 LINE L1 5708 5791 -360 224 148 37 12 chr21 21411226 21411307 -13496263 + (TA)n Simple_repeat Simple_repeat 1 83 0 2289 93 0 0 chr21 21411323 21411625 -13495945 + L1PB1 LINE L1 5783 6084 -67 31 68 0 0 chr21 21411639 21411698 -13495872 + AT_rich Low_complexity Low_complexity 1 59 0 472 247 39 28 chr21 21411803 21411985 -13495585 + LTR16A LTR ERVL 16 199 -251 243 210 0 99 chr21 21412275 21412331 -13495239 - Charlie8 DNA MER1_type -169 172 124 1641 155 0 51 chr21 21412331 21412655 -13494915 - AluJo SINE Alu 0 309 1 243 210 0 99 chr21 21412655 21412678 -13494892 - Charlie8 DNA MER1_type -217 124 100 274 224 0 0 chr21 21413750 21413799 -13493771 + L2 LINE L2 3265 3313 0 355 284 111 87 chr21 21413969 21414427 -13493143 + L2 LINE L2 2804 3272 0 1705 124 7 29 chr21 21414563 21414837 -13492733 + AluSx SINE Alu 25 292 -20 559 250 64 11 chr21 21414952 21415140 -13492430 + MLT1G1 LTR MaLR 1 198 -369 404 164 9 0 chr21 21415142 21415252 -13492318 + CT-rich Low_complexity Low_complexity 2 112 0 1255 259 102 3 chr21 21415252 21415596 -13491974 + MLT1G1 LTR MaLR 218 595 0 602 285 17 11 chr21 21415828 21416007 -13491563 + MIR SINE MIR 62 241 -21 295 252 59 101 chr21 21416023 21416261 -13491309 + L2 LINE L2 3083 3310 -3 276 220 0 0 chr21 21416229 21416279 -13491291 + L2 LINE L2 3223 3272 0 509 93 0 70 chr21 21417010 21417096 -13490474 + MADE1 DNA Mariner 1 80 0 403 260 51 2 chr21 21417156 21417347 -13490223 + L1MC4 LINE L1 6600 6705 -1337 443 114 0 91 chr21 21418080 21418168 -13489402 - MADE1 DNA Mariner 0 80 1 1951 121 0 7 chr21 21418437 21418727 -13488843 - AluJb SINE Alu -16 296 9 21 89 0 0 chr21 21421045 21421101 -13486469 + AT_rich Low_complexity Low_complexity 1 56 0 1161 112 0 0 chr21 21421211 21421778 -13485792 + (TTGG)n Simple_repeat Simple_repeat 1 567 0 1186 154 45 28 chr21 21422253 21422500 -13485070 + L1MA9 LINE L1 6057 6307 -5 2003 128 0 3 chr21 21422812 21423177 -13484393 + AluSx SINE Alu 1 364 0 1887 141 3 3 chr21 21423508 21423805 -13483765 + AluSx SINE Alu 1 297 -15 466 128 21 43 chr21 21424344 21424438 -13483132 + MER53 DNA DNA 24 115 -74 2284 90 3 0 chr21 21424526 21424836 -13482734 + AluSx SINE Alu 1 311 -1 373 198 49 0 chr21 21424853 21424934 -13482636 - MER53 DNA DNA -104 85 1 373 292 53 6 chr21 21424980 21425254 -13482316 + L2 LINE L2 2970 3313 0 359 225 0 0 chr21 21425410 21425481 -13482089 - MER5A DNA MER1_type -87 102 32 1958 144 3 3 chr21 21425501 21425813 -13481757 + AluSx SINE Alu 1 312 0 471 329 25 13 chr21 21426901 21427059 -13480511 + MIR3 SINE MIR 43 202 -6 341 259 32 57 chr21 21427596 21427754 -13479816 - MIR SINE MIR -10 252 99 2000 146 63 17 chr21 21430083 21430433 -13477137 - MLT1B LTR MaLR -1 389 24 2169 114 3 19 chr21 21431555 21431872 -13475698 - AluJo SINE Alu 0 312 1 730 253 37 33 chr21 21432638 21432883 -13474687 + MIR SINE MIR 9 254 -8 256 133 48 29 chr21 21433155 21433260 -13474310 + (CA)n Simple_repeat Simple_repeat 1 107 0 501 238 77 33 chr21 21433296 21433477 -13474093 + MER112 DNA MER1_type 67 255 -5 186 43 0 0 chr21 21433899 21433922 -13473648 + (ATAGG)n Simple_repeat Simple_repeat 3 25 0 288 70 0 0 chr21 21433955 21433998 -13473572 + (TG)n Simple_repeat Simple_repeat 2 44 0 315 0 0 0 chr21 21434526 21434561 -13473009 + (A)n Simple_repeat Simple_repeat 1 35 0 1866 146 0 4 chr21 21434721 21434996 -13472574 - AluJb SINE Alu -38 274 1 225 219 139 51 chr21 21435192 21435329 -13472241 + L2 LINE L2 1949 2097 -1217 1258 54 243 0 chr21 21435370 21435452 -13472118 - MER30 DNA MER1_type 0 230 169 441 0 0 0 chr21 21435452 21435501 -13472069 + (TG)n Simple_repeat Simple_repeat 2 50 0 1258 54 243 0 chr21 21435501 21435603 -13471967 - MER30 DNA MER1_type -61 169 1 278 271 24 0 chr21 21435932 21436017 -13471553 + L2 LINE L2 2307 2393 -921 446 149 27 0 chr21 21436094 21436167 -13471403 + MER2 DNA MER2_type 9 83 -261 480 111 12 25 chr21 21436167 21436248 -13471322 + MADE1 DNA Mariner 1 80 0 1006 156 98 51 chr21 21436248 21436298 -13471272 + MER2 DNA MER2_type 82 128 -216 2430 92 0 0 chr21 21436298 21436592 -13470978 - AluSc SINE Alu -15 294 1 1006 156 98 51 chr21 21436592 21436792 -13470778 + MER2 DNA MER2_type 128 344 0 459 291 90 28 chr21 21436799 21437266 -13470304 + L2 LINE L2 2481 2976 -338 196 372 23 16 chr21 21437463 21437592 -13469978 + L2 LINE L2 3173 3302 -11 500 282 64 87 chr21 21438326 21438762 -13468808 + HAL1 LINE L1 1009 1434 -1073 586 270 5 25 chr21 21438777 21438973 -13468597 + HAL1 LINE L1 1470 1661 -846 2049 152 0 0 chr21 21439087 21439384 -13468186 + AluSx SINE Alu 1 297 -15 22 56 0 0 chr21 21439467 21439503 -13468067 + AT_rich Low_complexity Low_complexity 1 36 0 316 292 29 15 chr21 21439689 21439826 -13467744 + L1M4 LINE L1 2478 2616 -3530 2502 74 3 0 chr21 21439881 21440191 -13467379 + AluY SINE Alu 1 311 0 570 236 26 50 chr21 21440225 21440348 -13467222 + L1ME3A LINE L1 5662 5777 -389 1834 201 76 54 chr21 21440348 21440955 -13466615 - MLT1E3 LTR MaLR 0 624 5 570 236 26 50 chr21 21440955 21441075 -13466495 + L1ME3A LINE L1 5777 5898 -268 1963 140 3 22 chr21 21441375 21441690 -13465880 + AluJb SINE Alu 4 312 0 546 133 0 31 chr21 21442021 21442119 -13465451 + FLAM_C SINE Alu 34 128 -15 2048 139 50 90 chr21 21442768 21443191 -13464379 - MLT2D LTR ERVL -8 406 1 325 301 66 30 chr21 21443329 21443495 -13464075 + L2 LINE L2 2551 2722 -592 928 193 59 15 chr21 21443513 21443715 -13463855 - MER20B DNA MER1_type -274 510 300 1514 198 76 12 chr21 21443720 21444063 -13463507 - MLT1A2 LTR MaLR 0 374 10 778 269 15 65 chr21 21444076 21444336 -13463234 - MER20B DNA MER1_type -510 274 28 2182 133 13 3 chr21 21444560 21444869 -13462701 - AluSx SINE Alu 0 312 1 530 165 198 0 chr21 21445960 21446081 -13461489 + MER46A DNA MER2_type 2 146 -90 2591 90 12 71 chr21 21446670 21447277 -13460293 - MER4A LTR ERV1 0 664 25 2260 160 7 34 chr21 21447277 21447690 -13459880 - MER57A LTR ERV1 0 403 2 864 62 9 0 chr21 21447690 21447802 -13459768 + MER57-int LTR ERV1 7424 7536 -1 790 196 30 18 chr21 21447809 21447977 -13459593 + L1MC2 LINE L1 6167 6336 -8 182 231 77 46 chr21 21447985 21448115 -13459455 + L2 LINE L2 1699 1832 -1482 1552 168 7 28 chr21 21448115 21448555 -13459015 - MLT1D LTR MaLR 0 505 2 451 277 42 12 chr21 21448569 21448735 -13458835 + L2 LINE L2 1868 2038 -1276 304 310 69 0 chr21 21448814 21448930 -13458640 + L2 LINE L2 2164 2287 -1027 1948 167 0 7 chr21 21448963 21449268 -13458302 - AluJb SINE Alu -9 303 1 678 223 58 3 chr21 21449347 21449655 -13457915 - L1MC4 LINE L1 -178 7864 7527 2382 104 0 0 chr21 21449804 21450111 -13457459 + AluSx SINE Alu 1 307 -5 808 256 29 13 chr21 21450166 21450404 -13457166 - L1MC4 LINE L1 -562 7480 7239 6632 231 36 16 chr21 21450443 21452200 -13455370 - L1MCa LINE L1 -926 5638 3848 1090 101 0 0 chr21 21452234 21452373 -13455197 - AluSq/x SINE Alu -174 139 1 1696 224 7 7 chr21 21452382 21452823 -13454747 - L1MCa LINE L1 -2666 3898 3458 3524 107 17 55 chr21 21452829 21452968 -13454602 - MER4B LTR ERV1 0 779 636 2986 9 0 0 chr21 21452968 21453284 -13454286 - AluYb8 SINE Alu -2 316 1 3524 107 17 55 chr21 21453284 21453782 -13453788 - MER4B LTR ERV1 -143 636 1 2576 246 26 12 chr21 21453786 21454526 -13453044 - L1MCa LINE L1 -3113 3451 2702 1172 161 37 37 chr21 21454526 21454743 -13452827 - AluJo SINE Alu -11 301 85 779 149 23 118 chr21 21454757 21455025 -13452545 - L1MCa LINE L1 -3947 2617 2461 2419 79 7 0 chr21 21455025 21455329 -13452241 - AluY SINE Alu -5 306 1 779 149 23 118 chr21 21455329 21455391 -13452179 - L1MCa LINE L1 -4103 2461 2395 2324 143 36 34 chr21 21455391 21455940 -13451630 - MLT2A2 LTR ERVL 0 554 1 868 174 72 14 chr21 21455940 21456147 -13451423 - L1MCa LINE L1 -4165 2399 2181 1851 201 81 59 chr21 21456216 21456630 -13450940 - MER21B LTR ERV1 -333 530 102 2358 67 3 38 chr21 21456630 21456943 -13450627 + AluY SINE Alu 2 303 -8 1851 201 81 59 chr21 21456943 21457036 -13450534 - MER21B LTR ERV1 -761 102 12 3981 216 69 27 chr21 21457047 21458093 -13449477 - L1MCa LINE L1 -4950 1095 6 1574 81 0 89 chr21 21458125 21458371 -13449199 - AluY SINE Alu -2 309 86 24 32 0 0 chr21 21458511 21458542 -13449028 + AT_rich Low_complexity Low_complexity 1 31 0 2316 110 0 3 chr21 21459051 21459360 -13448210 - AluSq SINE Alu -5 308 1 396 234 36 9 chr21 21459675 21459786 -13447784 - L2 LINE L2 0 3313 3200 293 206 9 0 chr21 21459869 21459976 -13447594 + C-rich Low_complexity Low_complexity 6 113 0 25 0 0 0 chr21 21459976 21460001 -13447569 + GC_rich Low_complexity Low_complexity 1 25 0 228 158 0 70 chr21 21460373 21460430 -13447140 + C-rich Low_complexity Low_complexity 79 131 0 285 51 0 0 chr21 21461788 21461827 -13445743 + (GTTTG)n Simple_repeat Simple_repeat 2 40 0 1787 136 12 4 chr21 21461829 21462087 -13445483 - AluSx SINE Alu -32 280 21 617 209 31 25 chr21 21462119 21462282 -13445288 - MER104 DNA MER2_type -13 167 4 26 0 0 0 chr21 21462619 21462645 -13444925 + AT_rich Low_complexity Low_complexity 1 26 0 626 244 83 67 chr21 21463229 21463709 -13443861 + HAL1b LINE L1 1 488 -860 1523 216 59 31 chr21 21463736 21464226 -13443344 + HAL1b LINE L1 564 1067 -281 369 0 0 0 chr21 21464251 21464292 -13443278 + (TG)n Simple_repeat Simple_repeat 2 42 0 282 189 0 0 chr21 21464293 21464346 -13443224 + HAL1b LINE L1 1197 1249 -99 346 281 9 18 chr21 21464377 21464491 -13443079 + HAL1b LINE L1 1205 1317 -31 3078 171 56 3 chr21 21464851 21465418 -13442152 - MER41B LTR ERV1 -38 597 1 1022 175 86 8 chr21 21465599 21465712 -13441858 - MER45B DNA AcHobo -613 968 865 2432 84 0 3 chr21 21465712 21466023 -13441547 + AluY SINE Alu 1 310 -1 1022 175 86 8 chr21 21466023 21466143 -13441427 - MER45B DNA AcHobo -716 865 717 430 263 0 0 chr21 21466815 21466910 -13440660 - MER45 DNA AcHobo -1444 137 43 288 0 0 0 chr21 21467146 21467178 -13440392 + (TG)n Simple_repeat Simple_repeat 2 33 0 1987 148 0 10 chr21 21467317 21467615 -13439955 + AluJb SINE Alu 1 295 -17 750 110 9 0 chr21 21467936 21468045 -13439525 + MER83 LTR ERV1 1 110 -338 2200 150 20 36 chr21 21468044 21468437 -13439133 + MER83 LTR ERV1 50 436 -12 773 290 36 27 chr21 21468848 21469182 -13438388 + L1MC4a LINE L1 5270 5606 -2202 492 284 70 5 chr21 21469191 21469392 -13438178 + LTR33 LTR ERVL 3 216 -305 1776 168 40 0 chr21 21470226 21470530 -13437040 + MER7A DNA MER2_type 2 315 -31 2490 131 27 29 chr21 21470530 21470607 -13436963 + L1PB4 LINE L1 5703 5779 -377 1603 142 59 35 chr21 21470607 21470896 -13436674 + AluJb SINE Alu 1 296 -16 2490 131 27 29 chr21 21470896 21471260 -13436310 + L1PB4 LINE L1 5779 6143 -13 365 252 9 43 chr21 21471407 21471522 -13436048 + L1MC4a LINE L1 5722 5832 -1976 2504 47 14 3 chr21 21472520 21472816 -13434754 + AluY SINE Alu 3 301 -10 447 19 0 0 chr21 21472820 21472872 -13434698 + (TG)n Simple_repeat Simple_repeat 2 53 0 2000 127 11 0 chr21 21472872 21473155 -13434415 - AluSq SINE Alu -27 286 1 2089 119 7 3 chr21 21473156 21473450 -13434120 - AluSx SINE Alu -17 295 1 257 271 159 0 chr21 21474376 21474483 -13433087 + MIR SINE MIR 67 190 -72 210 208 0 0 chr21 21475212 21475265 -13432305 + CT-rich Low_complexity Low_complexity 2 54 0 2582 57 0 0 chr21 21476140 21476437 -13431133 - AluY SINE Alu -14 297 1 582 321 83 15 chr21 21476451 21476716 -13430854 - L2 LINE L2 -40 3273 2991 385 283 67 8 chr21 21477061 21477181 -13430389 + MIR SINE MIR 48 174 -88 2188 139 10 3 chr21 21477307 21477617 -13429953 - AluSx SINE Alu 0 312 1 822 142 0 16 chr21 21478292 21478419 -13429151 + AluJb SINE Alu 1 125 -187 268 210 25 0 chr21 21478419 21478500 -13429070 + GA-rich Low_complexity Low_complexity 2 84 0 2432 102 0 0 chr21 21479129 21479432 -13428138 + AluSx SINE Alu 1 303 -9 713 256 178 3 chr21 21479828 21480150 -13427420 - L2 LINE L2 -308 3005 2626 375 257 20 50 chr21 21480501 21480602 -13426968 - L2 LINE L2 -688 2626 2529 2275 109 0 3 chr21 21480604 21480906 -13426664 - AluSq SINE Alu -12 301 1 1958 287 61 9 chr21 21480950 21481605 -13425965 - L2 LINE L2 -898 2416 1728 2166 112 0 0 chr21 21481868 21482145 -13425425 + AluSx SINE Alu 1 277 -35 357 24 0 0 chr21 21482145 21482187 -13425383 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 498 297 48 7 chr21 21482232 21482377 -13425193 + MIR SINE MIR 62 212 -50 233 192 58 39 chr21 21482454 21482506 -13425064 + MIR3 SINE MIR 109 161 -47 3818 81 70 0 chr21 21483587 21484105 -13423465 - MER41A LTR ERV1 0 554 1 4530 146 109 18 chr21 21484180 21485008 -13422562 + MER4D LTR ERV1 1 903 0 1880 244 55 46 chr21 21485305 21485941 -13421629 - MER21B LTR ERV1 -124 739 98 808 280 27 35 chr21 21486748 21487009 -13420561 - L2 LINE L2 0 3313 3055 523 194 115 37 chr21 21487009 21487200 -13420370 - LTR16A1 LTR ERVL 0 457 252 2019 116 10 140 chr21 21487291 21487776 -13419794 - LTR12 LTR ERV1 -234 437 16 503 212 44 0 chr21 21487977 21488090 -13419480 + MLT1D LTR MaLR 1 118 -387 2176 129 0 0 chr21 21488090 21488385 -13419185 + AluSx SINE Alu 1 295 -17 1520 177 56 16 chr21 21488385 21488690 -13418880 + MLT1D LTR MaLR 189 505 0 328 255 31 20 chr21 21488690 21488788 -13418782 - L2 LINE L2 -308 3005 2907 201 162 0 0 chr21 21490803 21490840 -13416730 + T-rich Low_complexity Low_complexity 2 38 0 557 39 0 13 chr21 21490979 21491057 -13416513 - L1PA2 LINE L1 -2 6153 6077 2263 133 7 0 chr21 21491094 21491403 -13416167 - AluSx SINE Alu 0 312 2 189 0 0 0 chr21 21491405 21491426 -13416144 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 348 283 56 67 chr21 21491457 21491637 -13415933 - L1ME LINE L1 -365 5805 5628 1881 156 3 7 chr21 21491660 21491949 -13415621 + AluJb SINE Alu 1 288 -24 768 259 31 66 chr21 21492004 21492153 -13415417 + MIR SINE MIR 13 151 -111 2351 80 7 3 chr21 21492153 21492453 -13415117 + AluSg SINE Alu 1 301 -9 768 259 31 66 chr21 21492453 21492562 -13415008 + MIR SINE MIR 151 262 0 904 212 42 0 chr21 21492609 21492774 -13414796 - FAM SINE Alu 0 175 4 2297 118 0 13 chr21 21493911 21494226 -13413344 - AluSx SINE Alu -1 311 1 1632 190 7 14 chr21 21494774 21495064 -13412506 + AluSx SINE Alu 1 288 -24 481 271 124 0 chr21 21495113 21495242 -13412328 + MIR3 SINE MIR 30 174 -34 183 100 0 0 chr21 21496404 21496434 -13411136 + (CCCCG)n Simple_repeat Simple_repeat 4 33 0 234 298 102 51 chr21 21497215 21497450 -13410120 + L2 LINE L2 2002 2248 -1066 2246 110 0 19 chr21 21497524 21497883 -13409687 - AluSx SINE Alu 0 353 1 220 244 116 81 chr21 21498077 21498249 -13409321 + L2 LINE L2 2430 2607 -707 405 218 0 129 chr21 21499625 21499719 -13407851 - L1MC4 LINE L1 -1 8041 7971 2586 62 0 0 chr21 21499719 21500025 -13407545 - AluY SINE Alu -5 306 1 405 218 0 129 chr21 21500025 21500077 -13407493 - L1MC4 LINE L1 -71 7971 7914 352 277 18 9 chr21 21500123 21500235 -13407335 - L1MC4a LINE L1 -84 7724 7612 2501 56 20 0 chr21 21500438 21500741 -13406829 - AluY SINE Alu -2 309 1 2201 139 0 0 chr21 21500741 21501042 -13406528 - AluSx SINE Alu -11 301 1 2297 115 3 0 chr21 21501514 21501809 -13405761 + AluSx SINE Alu 1 296 -16 635 148 10 10 chr21 21501897 21501998 -13405572 + FLAM_C SINE Alu 21 121 -22 236 191 21 0 chr21 21502028 21502075 -13405495 + GA-rich Low_complexity Low_complexity 1 48 0 2011 133 10 10 chr21 21502484 21502508 -13405062 - AluJb SINE Alu -4 308 285 198 0 0 0 chr21 21502508 21502530 -13405040 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 2011 133 10 10 chr21 21502530 21502813 -13404757 - AluJb SINE Alu -26 286 1 1350 159 53 0 chr21 21503085 21503306 -13404264 - MER7A DNA MER2_type 0 336 103 12706 105 20 13 chr21 21503306 21504236 -13403334 - Tigger1 DNA MER2_type 0 2418 1495 1840 125 62 18 chr21 21504236 21504541 -13403029 - AluSx SINE Alu 0 317 1 12706 105 20 13 chr21 21504541 21505215 -13402355 - Tigger1 DNA MER2_type -923 1495 827 2401 107 0 7 chr21 21505215 21505523 -13402047 - AluSg SINE Alu -4 306 1 12706 105 20 13 chr21 21505523 21506218 -13401352 - Tigger1 DNA MER2_type -1591 827 2 710 212 14 0 chr21 21506218 21506339 -13401231 - MER7A DNA MER2_type -224 122 2 271 209 77 22 chr21 21506474 21506565 -13401005 - MER103 DNA DNA -47 119 24 677 96 0 21 chr21 21507322 21507416 -13400154 + AluSg/x SINE Alu 202 293 -16 1551 123 3 187 chr21 21507635 21507728 -13399842 + AluJb SINE Alu 1 109 -193 2199 124 7 10 chr21 21507728 21508034 -13399536 - AluSx SINE Alu -1 311 7 1551 123 3 187 chr21 21508034 21508298 -13399272 + AluJb SINE Alu 109 292 -10 423 235 70 35 chr21 21508650 21508765 -13398805 - MIR SINE MIR -142 120 2 954 289 80 23 chr21 21508995 21509344 -13398226 - L2 LINE L2 0 3313 2945 1349 225 46 9 chr21 21510981 21511306 -13396264 - MLT1A1 LTR MaLR 0 365 29 1126 128 0 39 chr21 21511647 21511826 -13395744 - AluSq SINE Alu -17 296 125 2124 125 7 13 chr21 21512318 21512623 -13394947 + AluSq SINE Alu 1 303 -10 1267 127 246 13 chr21 21512634 21512894 -13394676 - AluSg SINE Alu 0 313 1 187 386 54 5 chr21 21513516 21513700 -13393870 - L3 LINE CR1 -188 1389 1197 2308 127 0 0 chr21 21514082 21514390 -13393180 + AluSq SINE Alu 2 309 -4 267 291 61 87 chr21 21514526 21514614 -13392956 - MIR SINE MIR -67 195 106 1993 161 112 18 chr21 21514614 21514955 -13392615 + MSTA LTR MaLR 1 385 -43 2100 122 23 3 chr21 21514955 21515258 -13392312 - AluSx SINE Alu -3 309 1 1993 161 112 18 chr21 21515258 21515307 -13392263 + MSTA LTR MaLR 385 428 0 267 291 61 87 chr21 21515307 21515414 -13392156 - MIR SINE MIR -156 106 5 224 433 0 0 chr21 21515444 21515548 -13392022 + L3 LINE CR1 470 573 -1004 2809 158 85 60 chr21 21516558 21516680 -13390890 - MER67B LTR ERV1 0 661 544 1605 173 0 8 chr21 21516680 21516940 -13390630 + AluJo SINE Alu 45 302 -10 2809 158 85 60 chr21 21516940 21517410 -13390160 - MER67B LTR ERV1 -117 544 49 1924 151 0 43 chr21 21517410 21517734 -13389836 - AluJb SINE Alu -2 310 1 2809 158 85 60 chr21 21517734 21517785 -13389785 - MER67B LTR ERV1 -612 49 1 276 130 0 0 chr21 21518432 21518478 -13389092 + (CA)n Simple_repeat Simple_repeat 2 47 0 1066 262 28 3 chr21 21518972 21519262 -13388308 - LTR16A LTR ERVL -14 436 140 207 278 44 33 chr21 21519347 21519437 -13388133 + L3 LINE CR1 325 415 -1162 240 83 28 0 chr21 21519847 21519883 -13387687 - MER58 DNA MER1_type 0 2420 2384 1092 120 17 34 chr21 21519883 21519898 -13387672 + AluSg/x SINE Alu 119 133 -177 2501 77 0 6 chr21 21519898 21520209 -13387361 + AluY SINE Alu 1 309 -2 1092 120 17 34 chr21 21520209 21520368 -13387202 + AluSg/x SINE Alu 133 290 -20 25 0 0 0 chr21 21520368 21520393 -13387177 + AT_rich Low_complexity Low_complexity 1 25 0 263 216 0 0 chr21 21520486 21520537 -13387033 - MER58 DNA MER1_type -332 54 4 2241 186 19 26 chr21 21520910 21521336 -13386234 - MLT1C LTR MaLR -2 465 41 2377 88 0 0 chr21 21521336 21521633 -13385937 - AluSx SINE Alu -15 297 1 2241 186 19 26 chr21 21521633 21521674 -13385896 - MLT1C LTR MaLR -426 41 1 945 315 40 16 chr21 21521711 21522159 -13385411 - ERVL LTR ERVL -1303 4461 4003 360 362 9 9 chr21 21522622 21522851 -13384719 - ERVL LTR ERVL -2335 3429 3201 564 335 67 12 chr21 21522937 21523280 -13384290 - ERVL LTR ERVL -2533 3121 2760 253 345 23 40 chr21 21523342 21523519 -13384051 - LTR16A LTR ERVL -259 191 18 2202 85 50 0 chr21 21523606 21523889 -13383681 + AluSx SINE Alu 1 297 -15 243 307 40 20 chr21 21524143 21524244 -13383326 + L3 LINE CR1 59 161 -1416 330 26 0 0 chr21 21524437 21524476 -13383094 + (TG)n Simple_repeat Simple_repeat 2 40 0 316 200 50 12 chr21 21525068 21525148 -13382422 - Charlie5 DNA MER1_type -27 2585 2503 2336 85 24 0 chr21 21525151 21525446 -13382124 + AluY SINE Alu 1 302 -9 2265 123 0 0 chr21 21525457 21525758 -13381812 + AluSx SINE Alu 1 301 -11 31 0 0 0 chr21 21525792 21525823 -13381747 + AT_rich Low_complexity Low_complexity 1 31 0 2309 102 3 13 chr21 21525831 21526144 -13381426 + AluSx SINE Alu 2 311 -1 2209 101 3 19 chr21 21526734 21527041 -13380529 + AluSx SINE Alu 1 302 -10 266 265 0 44 chr21 21527357 21527425 -13380145 - L2 LINE L2 -1 3271 3207 323 233 78 29 chr21 21527494 21527597 -13379973 + L1MEd LINE L1 891 998 -5121 1738 177 16 16 chr21 21527605 21527915 -13379655 + AluJb SINE Alu 3 312 0 2126 131 84 24 chr21 21527943 21528326 -13379244 - MLT2D LTR ERVL -8 406 1 2271 96 0 0 chr21 21528399 21528709 -13378861 + AluSx SINE Alu 1 310 0 1216 240 52 84 chr21 21528830 21529292 -13378278 + LTR9 LTR ERV1 114 560 -52 681 234 29 6 chr21 21529698 21529869 -13377701 + MER5B DNA MER1_type 4 178 0 2468 84 0 3 chr21 21530225 21530535 -13377035 + AluSq SINE Alu 1 309 -4 609 143 143 0 chr21 21530748 21530867 -13376703 + MLT1A1 LTR MaLR 122 257 -108 626 74 0 0 chr21 21530871 21530952 -13376618 + MER41B LTR ERV1 3 83 -552 288 191 0 29 chr21 21530958 21531026 -13376544 + MLT1A1 LTR MaLR 402 467 0 1083 228 27 0 chr21 21531724 21531948 -13375622 - MIR SINE MIR -4 258 29 727 244 61 46 chr21 21531953 21532232 -13375338 + MLT1E LTR MaLR 15 295 -247 539 239 36 23 chr21 21532424 21532633 -13374937 + LTR16A LTR ERVL 180 453 -4 1343 239 133 18 chr21 21532894 21533345 -13374225 + MER76 LTR ERV 1 503 -185 2260 103 0 0 chr21 21533414 21533704 -13373866 - AluSx SINE Alu -4 308 19 1702 168 20 7 chr21 21535179 21535476 -13372094 - AluJb SINE Alu -11 301 1 518 250 42 88 chr21 21535798 21535890 -13371680 - LTR33 LTR ERVL -337 184 104 2067 128 0 20 chr21 21535890 21536195 -13371375 - AluSx SINE Alu -9 303 5 518 250 42 88 chr21 21536195 21536294 -13371276 - LTR33 LTR ERVL -417 104 2 1464 139 49 16 chr21 21536647 21536892 -13370678 - AluJo SINE Alu -59 253 1 570 243 92 40 chr21 21537036 21537214 -13370356 + L2 LINE L2 2708 2904 -410 2202 182 13 52 chr21 21537214 21537675 -13369895 + LTR47B LTR ERVL 1 443 0 570 243 92 40 chr21 21537675 21537747 -13369823 + L2 LINE L2 2904 2971 -343 628 208 38 89 chr21 21537804 21538040 -13369530 + L2 LINE L2 3077 3300 -13 198 118 0 0 chr21 21538040 21538074 -13369496 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 773 254 26 26 chr21 21538776 21538965 -13368605 + MER5A DNA MER1_type 1 189 0 191 286 0 95 chr21 21539903 21539926 -13367644 + L2 LINE L2 3157 3181 -91 1982 192 24 14 chr21 21539926 21540296 -13367274 + MLT1A2 LTR MaLR 1 374 0 191 286 0 95 chr21 21540296 21540335 -13367235 + L2 LINE L2 3181 3213 -59 25 31 0 0 chr21 21540844 21540876 -13366694 + AT_rich Low_complexity Low_complexity 1 32 0 836 172 6 68 chr21 21540884 21540939 -13366631 + FRAM SINE Alu 1 58 -244 2071 131 0 0 chr21 21540939 21541222 -13366348 + AluSx SINE Alu 1 283 -29 836 172 6 68 chr21 21541222 21541329 -13366241 + FRAM SINE Alu 58 153 -13 22 0 0 0 chr21 21541971 21541993 -13365577 + AT_rich Low_complexity Low_complexity 1 22 0 807 246 101 22 chr21 21542120 21542397 -13365173 + HAL1 LINE L1 1002 1300 -1207 4192 226 68 33 chr21 21542399 21543206 -13364364 + L1MEc LINE L1 464 1326 -5499 2235 142 29 65 chr21 21543206 21543622 -13363948 - MER57A LTR ERV1 -2 401 1 4192 226 68 33 chr21 21543622 21543976 -13363594 + L1MEc LINE L1 1326 1666 -5159 297 278 46 0 chr21 21543988 21544096 -13363474 + L1MEc LINE L1 1540 1652 -4890 234 286 0 48 chr21 21544098 21544182 -13363388 + HAL1 LINE L1 1282 1361 -1146 928 184 13 88 chr21 21544310 21544549 -13363021 - MER76 LTR ERV -467 221 1 487 339 106 18 chr21 21544595 21544982 -13362588 - L2 LINE L2 -1012 2302 1882 670 248 133 0 chr21 21545627 21545853 -13361717 - MIR SINE MIR 0 262 7 226 340 66 0 chr21 21545996 21546102 -13361468 + L2 LINE L2 2928 3040 -232 1683 171 11 7 chr21 21546183 21546463 -13361107 - AluJb SINE Alu -26 286 6 967 256 112 24 chr21 21546797 21547172 -13360398 + Charlie7 DNA MER1_type 79 486 -2126 862 167 143 50 chr21 21547163 21547670 -13359900 + Charlie7 DNA MER1_type 663 1258 -1354 1230 163 56 9 chr21 21547670 21547703 -13359867 + L1MC4 LINE L1 6769 6799 -1243 204 111 0 0 chr21 21547703 21547739 -13359831 + (CAA)n Simple_repeat Simple_repeat 1 36 0 1230 163 56 9 chr21 21547739 21547938 -13359632 + L1MC4 LINE L1 6799 7012 -1030 512 148 11 0 chr21 21547933 21548021 -13359549 + L1MC2 LINE L1 5998 6086 -258 2095 197 83 51 chr21 21548038 21548642 -13358928 + MER50 LTR ERV1 26 648 -86 1242 141 100 8 chr21 21548680 21548921 -13358649 + L1MC2 LINE L1 6082 6344 0 1130 226 124 102 chr21 21548923 21548998 -13358572 + L1MC4 LINE L1 7003 7075 -967 2253 96 3 7 chr21 21548998 21549324 -13358246 + AluSp SINE Alu 1 313 0 1130 226 124 102 chr21 21549324 21549859 -13357711 + L1MC4 LINE L1 7075 7627 -415 321 255 20 29 chr21 21549927 21550029 -13357541 + L1MC4a LINE L1 7708 7808 0 1979 145 0 0 chr21 21550039 21550321 -13357249 + AluSx SINE Alu 1 282 -30 978 218 37 61 chr21 21550351 21550645 -13356925 + Charlie7 DNA MER1_type 1251 1537 -1075 870 256 116 3 chr21 21550674 21551010 -13356560 + Charlie7 DNA MER1_type 1938 2311 -301 1864 141 0 4 chr21 21551123 21551400 -13356170 + AluSx SINE Alu 3 278 -34 365 237 25 62 chr21 21551419 21551933 -13355637 + (CATA)n Simple_repeat Simple_repeat 1 495 0 366 198 10 112 chr21 21552045 21552242 -13355328 + (CATATA)n Simple_repeat Simple_repeat 1 177 0 507 95 44 79 chr21 21552303 21552924 -13354646 + (TA)n Simple_repeat Simple_repeat 1 599 0 418 63 15 151 chr21 21552952 21553158 -13354412 + (TA)n Simple_repeat Simple_repeat 2 179 0 234 145 16 65 chr21 21553177 21553239 -13354331 - L1MCa LINE L1 -4362 2064 2006 518 138 0 69 chr21 21553245 21553434 -13354136 + (TA)n Simple_repeat Simple_repeat 2 177 0 310 130 0 202 chr21 21553782 21554005 -13353565 + (GGATG)n Simple_repeat Simple_repeat 2 179 0 1163 133 100 5 chr21 21555663 21555986 -13351584 - LTR34 LTR ERV1 -13 686 285 753 80 0 0 chr21 21555986 21556086 -13351484 - MER4B LTR ERV1 -509 101 2 2082 105 46 0 chr21 21556280 21556565 -13351005 - AluSq SINE Alu -12 301 4 1717 144 0 48 chr21 21556580 21556872 -13350698 - LTR34 LTR ERV1 -421 278 1 701 288 68 8 chr21 21557401 21557637 -13349933 - MIR SINE MIR -12 250 1 2384 176 78 52 chr21 21557718 21558567 -13349003 - MER4B LTR ERV1 0 610 2 261 62 0 0 chr21 21558611 21558643 -13348927 + L1M4c LINE L1 635 666 -5718 25 108 0 0 chr21 21558940 21559042 -13348528 + AT_rich Low_complexity Low_complexity 1 102 0 3643 162 58 16 chr21 21559952 21560642 -13346928 + L1M4c LINE L1 20 738 -5646 11888 182 58 9 chr21 21560637 21563683 -13343887 + L1M2a LINE L1 1 3236 -3931 2522 18 0 0 chr21 21563683 21563958 -13343612 - AluY SINE Alu -3 308 34 11888 182 58 9 chr21 21563958 21564344 -13343226 + L1M2a LINE L1 3236 3602 -3565 1695 163 143 11 chr21 21564334 21564683 -13342887 + L1M4c LINE L1 1375 1769 -4615 6249 12 3 1 chr21 21565993 21566662 -13340908 - L1PA3 LINE L1 0 6155 5486 2168 132 3 0 chr21 21566816 21567118 -13340452 - AluSx SINE Alu -9 303 1 1088 161 11 0 chr21 21567142 21567316 -13340254 + AluSg/x SINE Alu 132 307 -3 455 185 22 34 chr21 21567687 21567865 -13339705 + (TA)n Simple_repeat Simple_repeat 1 176 0 1146 159 39 18 chr21 21568062 21568319 -13339251 + L1M1 LINE L1 5219 5489 -755 2256 95 10 7 chr21 21568319 21568615 -13338955 + AluSx SINE Alu 1 297 -15 1146 159 39 18 chr21 21568615 21568629 -13338941 + L1M1 LINE L1 5489 5501 -743 2353 88 7 0 chr21 21568802 21569110 -13338460 - AluSp SINE Alu -3 310 1 22 0 0 0 chr21 21569579 21569601 -13337969 + AT_rich Low_complexity Low_complexity 1 22 0 2313 111 0 19 chr21 21569708 21570023 -13337547 + AluSx SINE Alu 1 309 -3 1040 196 5 71 chr21 21570425 21570649 -13336921 - AluJo SINE Alu -17 295 87 236 362 43 26 chr21 21570660 21570776 -13336794 - MIR SINE MIR -75 133 16 458 273 82 57 chr21 21571338 21571420 -13336150 + L2 LINE L2 1691 1769 -1545 1487 203 88 70 chr21 21571420 21571748 -13335822 + Charlie1b DNA MER1_type 2 323 -2438 2188 130 3 0 chr21 21571748 21572049 -13335521 - AluSp SINE Alu -11 302 1 1487 203 88 70 chr21 21572049 21572195 -13335375 + Charlie1b DNA MER1_type 323 488 -2273 1993 154 0 7 chr21 21572195 21572487 -13335083 + AluJb SINE Alu 1 290 -22 1487 203 88 70 chr21 21572487 21572524 -13335046 + Charlie1b DNA MER1_type 488 523 0 458 273 82 57 chr21 21572524 21572631 -13334939 + L2 LINE L2 1769 1872 -1442 2532 38 0 41 chr21 21572631 21572945 -13334625 + AluY SINE Alu 1 301 -10 458 273 82 57 chr21 21572945 21573236 -13334334 + L2 LINE L2 1872 2238 -1076 264 194 45 30 chr21 21573214 21573281 -13334289 + L2 LINE L2 3241 3308 -5 1832 137 17 30 chr21 21573942 21574242 -13333328 + AluSx SINE Alu 1 296 -16 2262 105 0 0 chr21 21574819 21575156 -13332414 - AluSx SINE Alu 0 312 1 494 298 45 39 chr21 21575518 21575696 -13331874 + MIR3 SINE MIR 5 183 -25 865 184 6 6 chr21 21576007 21576165 -13331405 + FAM SINE Alu 1 158 -17 793 203 203 22 chr21 21576941 21577173 -13330397 - MLT1E1 LTR MaLR -2 652 379 2386 101 0 0 chr21 21577201 21577499 -13330071 - AluSx SINE Alu -14 298 1 963 128 0 0 chr21 21577503 21577636 -13329934 - AluSq/x SINE Alu -180 133 1 1574 148 44 8 chr21 21577637 21577887 -13329683 - MLT1E1 LTR MaLR -389 265 7 188 139 47 23 chr21 21578175 21578218 -13329352 + MIR SINE MIR 78 121 -141 1769 197 62 31 chr21 21578279 21578622 -13328948 + MER63B DNA MER1_type 1 361 -701 1974 106 0 15 chr21 21578622 21578896 -13328674 + AluSx SINE Alu 34 303 -9 1769 197 62 31 chr21 21578896 21578973 -13328597 + MER63B DNA MER1_type 361 434 -2 268 288 14 0 chr21 21579064 21579137 -13328433 + L2 LINE L2 3232 3305 -8 1729 147 49 18 chr21 21579718 21580004 -13327566 + AluJb SINE Alu 1 295 -17 254 267 60 60 chr21 21580083 21580199 -13327371 + MER5A DNA MER1_type 45 160 -29 961 178 41 0 chr21 21580215 21580384 -13327186 - MER20 DNA MER1_type -14 205 30 480 162 7 169 chr21 21580386 21580528 -13327042 + MER106B DNA MER1_type 28 146 -913 1223 173 0 5 chr21 21581602 21581833 -13325737 - AluJb SINE Alu 0 316 87 1158 133 6 17 chr21 21581876 21582056 -13325514 - AluJo SINE Alu -125 187 10 378 256 98 15 chr21 21582105 21582238 -13325332 - MIR SINE MIR -109 153 10 1821 120 16 8 chr21 21582412 21582705 -13324865 + AluSx SINE Alu 23 317 0 22 56 0 0 chr21 21583241 21583277 -13324293 + AT_rich Low_complexity Low_complexity 1 36 0 2295 88 3 0 chr21 21584130 21584415 -13323155 + AluSx SINE Alu 1 286 -26 349 194 30 0 chr21 21584465 21584532 -13323038 + Tigger5 DNA MER2_type 2255 2323 0 23 0 0 0 chr21 21585331 21585354 -13322216 + AT_rich Low_complexity Low_complexity 1 23 0 2269 88 11 0 chr21 21585807 21586092 -13321478 + AluSc SINE Alu 3 290 -19 2118 91 14 20 chr21 21587600 21587897 -13319673 - AluSg SINE Alu -15 295 1 28 61 0 0 chr21 21588513 21588562 -13319008 + AT_rich Low_complexity Low_complexity 1 49 0 702 156 0 41 chr21 21588787 21588909 -13318661 + FLAM_C SINE Alu 2 118 -25 21 0 0 0 chr21 21588909 21588930 -13318640 + AT_rich Low_complexity Low_complexity 1 21 0 246 213 236 79 chr21 21589070 21589197 -13318373 + L2 LINE L2 3125 3271 -1 1764 71 0 0 chr21 21590230 21590441 -13317129 + AluSg/x SINE Alu 83 293 -17 1549 91 0 0 chr21 21591704 21591902 -13315668 - AluSq SINE Alu -3 310 113 2632 171 84 16 chr21 21591902 21592214 -13315356 + MER21B LTR ERV1 331 691 -172 2097 211 37 64 chr21 21592214 21592843 -13314727 - LTR9 LTR ERV1 0 612 1 2632 171 84 16 chr21 21592843 21593028 -13314542 + MER21B LTR ERV1 691 862 -1 949 175 26 0 chr21 21593033 21593222 -13314348 + L1MB2 LINE L1 5045 5238 -908 1594 189 77 31 chr21 21593240 21593305 -13314265 + L1MB2 LINE L1 5769 5830 -341 2781 32 0 0 chr21 21593305 21593615 -13313955 + AluY SINE Alu 1 310 -1 1594 189 77 31 chr21 21593615 21593899 -13313671 + L1MB2 LINE L1 5830 6134 -37 788 178 8 0 chr21 21593899 21594028 -13313542 - FLAM_A SINE Alu -3 130 1 2076 129 0 0 chr21 21594230 21594510 -13313060 + AluSx SINE Alu 1 280 -32 1641 238 92 76 chr21 21594672 21594913 -13312657 - Charlie2 DNA MER1_type -16 2846 2610 1801 158 7 21 chr21 21594913 21595204 -13312366 + AluJo SINE Alu 1 287 -25 1641 238 92 76 chr21 21595204 21595440 -13312130 - Charlie2 DNA MER1_type -252 2610 2379 2309 105 3 0 chr21 21595440 21595744 -13311826 + AluSg SINE Alu 1 305 -5 1641 238 92 76 chr21 21595744 21595859 -13311711 - Charlie2 DNA MER1_type -483 2379 2267 2074 119 0 7 chr21 21595859 21596171 -13311399 - AluSx SINE Alu 0 310 1 1641 238 92 76 chr21 21596171 21596445 -13311125 - Charlie2 DNA MER1_type -595 2267 1963 2730 97 81 32 chr21 21596451 21596894 -13310676 + MER4C LTR ERV1 1 465 0 2023 142 6 3 chr21 21596913 21597224 -13310346 + AluJb SINE Alu 1 312 0 1649 183 49 74 chr21 21597314 21597782 -13309788 + LTR10B LTR ERV1 1 547 0 2253 99 3 0 chr21 21597956 21598307 -13309263 - AluSx SINE Alu 0 352 1 180 0 0 0 chr21 21598326 21598346 -13309224 + (TG)n Simple_repeat Simple_repeat 1 20 0 2371 204 28 58 chr21 21598383 21599035 -13308535 + LTR27 LTR ERV1 3 634 -2 2223 123 3 0 chr21 21599068 21599368 -13308202 - AluSx SINE Alu -11 301 1 351 248 91 33 chr21 21599374 21599495 -13308075 - FLAM_C SINE Alu 0 133 6 308 259 86 36 chr21 21599692 21599831 -13307739 + LTR16A LTR ERVL 43 188 -262 291 195 42 59 chr21 21599887 21600005 -13307565 + LTR16A1 LTR ERVL 336 451 -6 1715 213 105 49 chr21 21600055 21600646 -13306924 + MLT1E3 LTR MaLR 1 624 0 2015 152 35 27 chr21 21600714 21601192 -13306378 + LTR49 LTR ERV1 1 521 -74 2025 140 0 33 chr21 21601192 21601499 -13306071 - AluSx SINE Alu -15 297 1 2015 152 35 27 chr21 21601499 21601575 -13305995 + LTR49 LTR ERV1 521 595 0 567 99 20 40 chr21 21602075 21602176 -13305394 + MER20 DNA MER1_type 16 114 -105 2478 68 0 16 chr21 21602322 21602630 -13304940 - AluY SINE Alu -8 303 1 2434 50 0 0 chr21 21602943 21603222 -13304348 + AluY SINE Alu 21 299 -12 2321 80 14 0 chr21 21603229 21603518 -13304052 + AluSc SINE Alu 1 293 -16 352 206 0 0 chr21 21604887 21604955 -13302615 + MIR SINE MIR 53 120 -142 917 134 0 22 chr21 21605141 21605275 -13302295 - FLAM_C SINE Alu -2 131 1 619 251 42 5 chr21 21605353 21605568 -13302002 + L2 LINE L2 2374 2596 -718 578 186 0 0 chr21 21605582 21605684 -13301886 - MLT2C2 LTR ERVL -362 102 1 1734 107 149 0 chr21 21605796 21606058 -13301512 + AluSx SINE Alu 1 301 -1 33 25 0 0 chr21 21606449 21606489 -13301081 + AT_rich Low_complexity Low_complexity 1 40 0 1973 141 0 0 chr21 21606489 21606812 -13300758 + AluSx SINE Alu 1 323 0 1960 139 10 0 chr21 21608124 21608419 -13299151 - AluSx SINE Alu -14 298 1 791 223 47 33 chr21 21608474 21608685 -13298885 + Charlie1b DNA MER1_type 41 254 -269 2281 94 0 3 chr21 21608710 21608998 -13298572 + AluSq SINE Alu 1 287 -26 1575 187 22 12 chr21 21609089 21609410 -13298160 - L1MB7 LINE L1 -155 6029 5706 318 111 56 14 chr21 21609464 21609536 -13298034 + Charlie1b DNA MER1_type 284 358 -165 1775 85 0 99 chr21 21609537 21609819 -13297751 - AluSx SINE Alu -13 299 46 532 237 50 22 chr21 21609848 21609987 -13297583 + LTR49 LTR ERV1 4 146 -449 1903 138 16 23 chr21 21610186 21610490 -13297080 + AluSx SINE Alu 1 302 -10 278 202 137 125 chr21 21610508 21610676 -13296894 + LTR48 LTR ERV1 613 782 -5 1515 215 16 6 chr21 21611094 21611415 -13296155 - L1MB7 LINE L1 -155 6029 5706 1898 134 9 47 chr21 21611427 21611747 -13295823 - AluJb SINE Alu -4 308 1 2317 104 13 7 chr21 21612034 21612342 -13295228 + AluSx SINE Alu 1 310 -2 415 146 11 11 chr21 21612364 21612453 -13295117 + A-rich Low_complexity Low_complexity 4 92 0 1744 142 36 14 chr21 21612776 21613057 -13294513 + AluJb SINE Alu 1 287 -25 488 238 10 0 chr21 21613259 21613360 -13294210 - MER81 DNA DNA -1 113 12 1728 156 3 13 chr21 21613679 21613980 -13293590 - L1MB5 LINE L1 -8 6166 5869 1750 147 0 80 chr21 21613983 21614310 -13293260 - AluJb SINE Alu -11 301 1 2101 140 0 0 chr21 21614354 21614654 -13292916 - AluSq SINE Alu -13 300 1 1448 176 46 21 chr21 21615579 21615863 -13291707 + AluJo SINE Alu 1 291 -21 2017 76 61 29 chr21 21615930 21616207 -13291363 + AluSp SINE Alu 1 286 -27 377 292 54 0 chr21 21616379 21616509 -13291061 + LTR67 LTR ERVL 402 538 -19 717 115 0 77 chr21 21616712 21616842 -13290728 - FLAM_C SINE Alu -9 134 15 1918 143 11 0 chr21 21617132 21617441 -13290129 - AluSx SINE Alu 0 312 1 2485 62 0 0 chr21 21617699 21618006 -13289564 - AluY SINE Alu -4 307 1 478 219 95 7 chr21 21618234 21618371 -13289199 - L1MA10 LINE L1 -9 6325 6177 672 217 0 36 chr21 21618551 21618689 -13288881 + FLAM_A SINE Alu 1 133 -9 364 244 12 0 chr21 21618746 21618828 -13288742 + L2 LINE L2 3230 3312 -1 1790 141 0 38 chr21 21618875 21619022 -13288548 - AluJo SINE Alu -32 280 148 2389 98 3 0 chr21 21619022 21619327 -13288243 - AluSp SINE Alu -7 306 1 1790 141 0 38 chr21 21619327 21619470 -13288100 - AluJo SINE Alu -164 148 1 356 216 181 35 chr21 21620202 21620318 -13287252 + L2 LINE L2 3180 3312 -1 213 121 0 0 chr21 21620324 21620357 -13287213 + (GGGA)n Simple_repeat Simple_repeat 3 35 0 2325 103 7 0 chr21 21621089 21621116 -13286454 - AluSx SINE Alu -10 302 1 2179 99 7 0 chr21 21621116 21621389 -13286181 - AluSx SINE Alu -37 275 1 1671 187 19 13 chr21 21621442 21621752 -13285818 + AluJo SINE Alu 1 312 0 2386 104 3 0 chr21 21621920 21622228 -13285342 - AluSq SINE Alu -4 309 1 240 35 0 0 chr21 21622771 21622800 -13284770 + (TG)n Simple_repeat Simple_repeat 1 29 0 1544 192 31 43 chr21 21622922 21623214 -13284356 + MLT1D LTR MaLR 1 288 -217 2039 110 0 45 chr21 21623214 21623524 -13284046 + AluSx SINE Alu 1 296 -16 1544 192 31 43 chr21 21623524 21623622 -13283948 + MLT1D LTR MaLR 288 386 -119 1146 207 0 4 chr21 21623627 21623854 -13283716 - AluJb SINE Alu 0 312 87 1885 122 22 7 chr21 21623883 21624154 -13283416 - AluJo SINE Alu -23 289 15 573 168 28 0 chr21 21624158 21624265 -13283305 + MLT1D LTR MaLR 396 505 0 2455 54 3 0 chr21 21624649 21624945 -13282625 - AluY SINE Alu -14 297 1 1776 143 66 0 chr21 21625090 21625376 -13282194 - AluSg SINE Alu -5 305 1 180 176 0 0 chr21 21625429 21625463 -13282107 + (CA)n Simple_repeat Simple_repeat 2 35 0 246 328 78 31 chr21 21625905 21626033 -13281537 - LTR67 LTR ERVL -421 136 3 2961 86 13 46 chr21 21626254 21626707 -13280863 + MER1A DNA MER1_type 92 529 0 1817 166 3 29 chr21 21626816 21627123 -13280447 - AluJo SINE Alu -13 299 1 2405 100 0 0 chr21 21627488 21627787 -13279783 + AluSx SINE Alu 1 299 -13 230 304 14 0 chr21 21628614 21628683 -13278887 + MIR SINE MIR 28 97 -165 575 302 52 9 chr21 21628686 21628731 -13278839 - MLT2F LTR ERVL -4 659 617 438 20 0 0 chr21 21628731 21628782 -13278788 + (TG)n Simple_repeat Simple_repeat 2 52 0 575 302 52 9 chr21 21628782 21628948 -13278622 - MLT2F LTR ERVL -46 617 439 482 304 28 45 chr21 21629015 21629191 -13278379 - MLT2F LTR ERVL -382 281 110 2453 141 28 21 chr21 21629191 21629395 -13278175 + MSTC LTR MaLR 1 202 -226 2178 116 20 0 chr21 21629395 21629698 -13277872 + AluSq SINE Alu 5 313 0 2453 141 28 21 chr21 21629698 21629918 -13277652 + MSTC LTR MaLR 202 428 0 482 304 28 45 chr21 21629918 21630027 -13277543 - MLT2F LTR ERVL -553 110 1 2343 119 3 0 chr21 21630361 21630672 -13276898 - AluSx SINE Alu 0 312 1 2289 111 3 0 chr21 21630707 21631004 -13276566 - AluSx SINE Alu -14 298 1 2603 149 42 54 chr21 21631008 21631387 -13276183 + LTR38B LTR ERV1 66 438 -172 2241 69 14 0 chr21 21631387 21631719 -13275851 + AluY SINE Alu 1 336 0 2603 149 42 54 chr21 21631719 21631890 -13275680 + LTR38B LTR ERV1 438 610 0 2456 80 3 3 chr21 21632044 21632355 -13275215 - AluSx SINE Alu 0 312 2 544 28 141 0 chr21 21632972 21633043 -13274527 + AluSc SINE Alu 207 287 -22 213 57 38 57 chr21 21633395 21633448 -13274122 + (CGGGGG)n Simple_repeat Simple_repeat 6 57 0 216 246 15 15 chr21 21633619 21633684 -13273886 + (CCG)n Simple_repeat Simple_repeat 2 66 0 1658 152 37 7 chr21 21634503 21634798 -13272772 - AluJb SINE Alu -8 304 1 1959 99 89 3 chr21 21634917 21635199 -13272371 + AluSg SINE Alu 3 308 -2 225 286 33 55 chr21 21635458 21635549 -13272021 + MIR SINE MIR 34 122 -86 21 0 0 0 chr21 21635793 21635814 -13271756 + AT_rich Low_complexity Low_complexity 1 21 0 2147 116 10 7 chr21 21635818 21636128 -13271442 + AluSx SINE Alu 1 311 -1 2199 116 3 10 chr21 21636160 21636471 -13271099 + AluSx SINE Alu 1 309 -3 2045 147 0 3 chr21 21636718 21637018 -13270552 - AluJb SINE Alu -13 299 1 199 308 165 11 chr21 21637491 21637582 -13269988 - MIR SINE MIR -1 261 157 1996 120 0 83 chr21 21637666 21637992 -13269578 - AluSx SINE Alu -13 299 1 24 53 0 0 chr21 21638170 21638208 -13269362 + AT_rich Low_complexity Low_complexity 1 38 0 2216 123 7 0 chr21 21638264 21638565 -13269005 - AluSq SINE Alu -10 303 1 2295 94 7 0 chr21 21638966 21639254 -13268316 + AluSg SINE Alu 1 290 -20 2152 107 0 29 chr21 21639256 21639564 -13268006 + AluY SINE Alu 1 299 -12 244 175 0 0 chr21 21639700 21639740 -13267830 - MER58A DNA MER1_type 0 224 185 2303 107 0 3 chr21 21640236 21640534 -13267036 - AluSg1 SINE Alu -12 297 1 2204 110 3 3 chr21 21640542 21640833 -13266737 - AluSx SINE Alu -17 295 5 1645 188 70 84 chr21 21641537 21641979 -13265591 + MLT1D LTR MaLR 1 437 -68 1121 135 0 39 chr21 21641979 21642157 -13265413 - FAM SINE Alu -4 171 1 1645 188 70 84 chr21 21642157 21642226 -13265344 + MLT1D LTR MaLR 437 505 0 598 262 89 9 chr21 21642284 21642498 -13265072 - PABL_B LTR ERV1 0 667 437 2176 99 3 0 chr21 21642621 21642924 -13264646 - AluSx SINE Alu 0 304 1 2269 122 0 0 chr21 21643896 21644200 -13263370 - AluSx SINE Alu -6 306 3 206 260 39 96 chr21 21644203 21644307 -13263263 + MER5A DNA MER1_type 15 112 -77 330 248 73 37 chr21 21644569 21644678 -13262892 - MIR SINE MIR -60 148 36 203 220 40 0 chr21 21644905 21644955 -13262615 + CT-rich Low_complexity Low_complexity 1 52 0 192 152 0 0 chr21 21645897 21645930 -13261640 + (TG)n Simple_repeat Simple_repeat 2 34 0 1866 154 20 20 chr21 21645933 21646232 -13261338 - AluSx SINE Alu -13 299 1 23 68 0 0 chr21 21646468 21646512 -13261058 + AT_rich Low_complexity Low_complexity 1 44 0 2577 68 0 0 chr21 21646611 21646918 -13260652 + AluY SINE Alu 1 307 -4 1106 152 29 0 chr21 21646984 21647155 -13260415 - AluSg/x SINE Alu -1 309 134 1987 155 7 0 chr21 21647163 21647454 -13260116 - AluJb SINE Alu -13 299 7 885 200 47 6 chr21 21647619 21647789 -13259781 - MER45A DNA AcHobo 0 178 2 549 122 0 0 chr21 21648080 21648184 -13259386 - AluSg/x SINE Alu 0 310 207 1820 95 4 0 chr21 21648195 21648426 -13259144 - AluSq SINE Alu -81 232 1 518 288 105 52 chr21 21649034 21649151 -13258419 - L1ME4a LINE L1 -1 6120 6011 2187 115 0 7 chr21 21649151 21649478 -13258092 - AluSx SINE Alu 0 325 1 518 288 105 52 chr21 21649478 21649530 -13258040 - L1ME4a LINE L1 -110 6011 5963 207 0 0 0 chr21 21649530 21649553 -13258017 + (TG)n Simple_repeat Simple_repeat 2 24 0 518 288 105 52 chr21 21649553 21649647 -13257923 - L1ME4a LINE L1 -158 5963 5840 285 224 66 0 chr21 21649775 21649851 -13257719 - L1ME4a LINE L1 -450 5671 5591 724 91 0 0 chr21 21650721 21650831 -13256739 + L1M4 LINE L1 5212 5321 -825 813 163 0 7 chr21 21650835 21650970 -13256600 + AluJb SINE Alu 1 134 -178 1070 118 0 0 chr21 21650985 21651121 -13256449 + AluSq/x SINE Alu 1 136 -177 2286 120 0 0 chr21 21651122 21651421 -13256149 + AluSx SINE Alu 3 301 -11 1129 175 62 9 chr21 21651937 21652148 -13255422 + MER58A DNA MER1_type 1 222 -2 357 210 0 0 chr21 21652226 21652288 -13255282 + L2 LINE L2 3252 3313 0 251 166 139 148 chr21 21652467 21652593 -13254977 + L1MC5 LINE L1 7597 7723 -238 312 80 0 0 chr21 21652593 21652643 -13254927 + L1MB4 LINE L1 6131 6180 0 251 166 139 148 chr21 21652643 21652666 -13254904 + L1MC5 LINE L1 7723 7745 -216 2530 96 0 0 chr21 21652666 21652978 -13254592 + AluSq SINE Alu 2 313 0 251 166 139 148 chr21 21652978 21653107 -13254463 + L1MC5 LINE L1 7745 7874 -87 2660 50 0 0 chr21 21653107 21653409 -13254161 - AluY SINE Alu -9 302 1 251 166 139 148 chr21 21653409 21653457 -13254113 + L1MC5 LINE L1 7874 7924 -37 2098 107 0 41 chr21 21653457 21653774 -13253796 - AluSg SINE Alu -6 304 1 715 152 0 0 chr21 21653794 21653899 -13253671 + FLAM_C SINE Alu 14 118 -25 2168 125 0 7 chr21 21654089 21654384 -13253186 + AluSx SINE Alu 1 293 -19 551 252 14 14 chr21 21654660 21654799 -13252771 + MIR SINE MIR 11 149 -113 1135 113 18 0 chr21 21654804 21654972 -13252598 - AluSg/x SINE Alu -2 308 138 2157 108 0 33 chr21 21654979 21655286 -13252284 - AluSq SINE Alu -12 301 5 2302 104 3 3 chr21 21656206 21656505 -13251065 + AluSx SINE Alu 5 303 -9 2217 109 7 10 chr21 21656507 21656809 -13250761 + AluSg SINE Alu 1 301 -9 231 36 0 0 chr21 21656848 21656876 -13250694 + (TA)n Simple_repeat Simple_repeat 1 28 0 228 305 12 0 chr21 21657835 21657917 -13249653 - MIR SINE MIR 0 262 180 1130 103 0 7 chr21 21657955 21658101 -13249469 - AluSq/x SINE Alu -168 145 1 189 0 0 0 chr21 21658184 21658205 -13249365 + (CAGAG)n Simple_repeat Simple_repeat 5 25 0 1754 149 19 35 chr21 21658280 21658596 -13248974 - AluJb SINE Alu -1 311 1 285 279 0 0 chr21 21659124 21659185 -13248385 + MIR3 SINE MIR 97 157 -51 275 197 141 0 chr21 21659344 21659415 -13248155 - MER68 LTR ERV1 0 562 482 546 153 174 0 chr21 21659418 21659516 -13248054 - AluSg/x SINE Alu -21 289 175 1823 215 15 10 chr21 21659536 21659927 -13247643 - MER68 LTR ERV1 -85 477 85 2367 106 0 0 chr21 21659927 21660230 -13247340 + AluSx SINE Alu 1 303 -9 1738 148 22 59 chr21 21660499 21660823 -13246747 - AluJo SINE Alu 0 312 1 2233 122 3 0 chr21 21661358 21661661 -13245909 + AluSx SINE Alu 1 304 -8 1821 133 43 4 chr21 21661663 21661942 -13245628 - AluSx SINE Alu -22 290 1 2169 132 0 0 chr21 21662961 21663256 -13244314 - AluSx SINE Alu -17 295 1 2521 168 31 12 chr21 21663371 21663860 -13243710 + L1MB3 LINE L1 5682 6179 -4 2238 125 0 0 chr21 21664310 21664614 -13242956 + AluSx SINE Alu 1 304 -8 2490 82 0 3 chr21 21665673 21665978 -13241592 + AluSc SINE Alu 1 304 -5 1078 104 24 24 chr21 21665978 21666142 -13241428 + AluSg/x SINE Alu 132 295 -15 1944 72 114 0 chr21 21666147 21666411 -13241159 + AluSp SINE Alu 2 295 -18 2174 139 13 0 chr21 21666511 21666820 -13240750 + AluSq SINE Alu 1 313 0 207 313 36 12 chr21 21667359 21667442 -13240128 + MIR SINE MIR 30 114 -94 1955 161 3 0 chr21 21667772 21668070 -13239500 + AluJb SINE Alu 1 299 -13 1983 139 3 30 chr21 21668073 21668375 -13239195 + AluJo SINE Alu 1 294 -18 1454 99 0 0 chr21 21668586 21668768 -13238802 + AluSq SINE Alu 1 182 -131 2437 92 0 0 chr21 21668802 21669097 -13238473 - AluSg SINE Alu -14 296 2 2239 122 0 0 chr21 21669456 21669750 -13237820 - AluSx SINE Alu -18 294 1 2127 134 0 0 chr21 21669836 21670128 -13237442 + AluSg SINE Alu 1 292 -18 773 167 90 0 chr21 21670214 21670370 -13237200 + MER58 DNA MER1_type 28 197 -144 2099 126 17 0 chr21 21670376 21670669 -13236901 + AluSx SINE Alu 1 298 -14 2295 99 3 3 chr21 21670671 21670973 -13236597 + AluSg SINE Alu 1 302 -8 1976 150 0 0 chr21 21671018 21671311 -13236259 + AluSx SINE Alu 1 293 -19 2541 117 15 80 chr21 21671380 21671698 -13235872 - MER65A LTR ERV1 -14 431 150 1993 145 0 3 chr21 21671698 21672001 -13235569 - AluSx SINE Alu 0 302 1 2541 117 15 80 chr21 21672001 21672142 -13235428 - MER65A LTR ERV1 -295 150 1 2173 99 3 3 chr21 21672709 21673022 -13234548 + AluSx SINE Alu 1 313 0 750 237 80 37 chr21 21673580 21673824 -13233746 + L1MC4 LINE L1 6174 6264 -95 501 139 33 90 chr21 21673899 21673963 -13233607 + L1MC4 LINE L1 7928 7983 -59 2229 108 16 0 chr21 21673963 21674269 -13233301 - AluSx SINE Alu -1 311 1 501 139 33 90 chr21 21674269 21674326 -13233244 + L1MC4 LINE L1 7983 8042 0 2002 141 10 0 chr21 21674336 21674627 -13232943 + AluJb SINE Alu 1 294 -18 1016 145 6 18 chr21 21674734 21674900 -13232670 + FAM SINE Alu 1 49 0 1439 134 190 4 chr21 21674919 21675172 -13232398 + AluJb SINE Alu 1 300 -2 1928 111 62 14 chr21 21675590 21675878 -13231692 + AluSx SINE Alu 2 303 -9 2111 132 10 3 chr21 21676297 21676607 -13230963 - AluSx SINE Alu 0 312 1 189 0 0 0 chr21 21676706 21676727 -13230843 + (CA)n Simple_repeat Simple_repeat 2 22 0 198 0 0 0 chr21 21676727 21676749 -13230821 + (A)n Simple_repeat Simple_repeat 1 22 0 827 146 8 0 chr21 21676798 21676921 -13230649 + FLAM_A SINE Alu 1 124 -9 2177 127 3 6 chr21 21676932 21677246 -13230324 + AluSq SINE Alu 1 313 0 513 181 53 45 chr21 21677414 21677547 -13230023 + FRAM SINE Alu 43 176 0 351 0 0 0 chr21 21677752 21677791 -13229779 + (CA)n Simple_repeat Simple_repeat 2 40 0 2316 93 0 6 chr21 21678052 21678363 -13229207 - AluSg SINE Alu -1 309 1 1283 211 36 46 chr21 21678435 21678556 -13229014 + AluJo SINE Alu 1 122 -190 2004 81 0 12 chr21 21678556 21678814 -13228756 - AluY SINE Alu -19 292 38 1283 211 36 46 chr21 21678814 21678995 -13228575 + AluJo SINE Alu 122 300 -12 2134 113 10 0 chr21 21680275 21680566 -13227004 - AluSq SINE Alu -19 294 1 352 221 86 57 chr21 21681356 21681496 -13226074 - L2 LINE L2 -1 3312 3169 191 242 53 95 chr21 21681705 21681800 -13225770 - L2 LINE L2 -951 2363 2273 2276 229 101 73 chr21 21682364 21683159 -13224411 + L1MEc LINE L1 307 1144 -5252 2053 117 33 0 chr21 21683159 21683460 -13224110 - AluSx SINE Alu 0 310 1 2276 229 101 73 chr21 21683460 21683780 -13223790 + L1MEc LINE L1 1144 1454 -4942 21 0 0 0 chr21 21683831 21683852 -13223718 + AT_rich Low_complexity Low_complexity 1 21 0 2193 127 3 0 chr21 21683892 21684191 -13223379 + AluSx SINE Alu 1 300 -12 2111 125 0 7 chr21 21684383 21684671 -13222899 - AluSx SINE Alu -26 286 1 346 261 114 45 chr21 21684796 21684914 -13222656 + MIR SINE MIR 19 128 -134 1655 144 32 14 chr21 21684914 21685227 -13222343 + AluSx SINE Alu 3 320 0 346 261 114 45 chr21 21685227 21685272 -13222298 + MIR SINE MIR 128 198 -64 1658 176 46 3 chr21 21685272 21685556 -13222014 - AluJb SINE Alu -16 296 1 1022 175 6 17 chr21 21686256 21686433 -13221137 - FAM SINE Alu 0 175 1 889 262 57 0 chr21 21686684 21686932 -13220638 + MIR SINE MIR 1 262 0 2116 142 3 0 chr21 21687043 21687339 -13220231 + AluSx SINE Alu 1 297 -15 2278 110 0 3 chr21 21687438 21687739 -13219831 + AluSq SINE Alu 1 300 -13 2308 104 0 0 chr21 21688302 21688591 -13218979 + AluSx SINE Alu 1 289 -23 1220 129 62 22 chr21 21688619 21688844 -13218726 + L1MB8 LINE L1 5945 6178 0 2402 96 0 7 chr21 21689454 21689755 -13217815 + AluSx SINE Alu 1 299 -13 1090 243 79 19 chr21 21689835 21690152 -13217418 - MER46C DNA MER2_type -2 336 1 1945 143 10 3 chr21 21691592 21691886 -13215684 + AluSq SINE Alu 1 296 -17 940 181 0 0 chr21 21692596 21692751 -13214819 + FRAM SINE Alu 1 155 -11 2294 111 0 9 chr21 21693080 21693395 -13214175 + AluSx SINE Alu 1 312 0 1180 203 26 40 chr21 21693457 21693697 -13213873 + L1ME1 LINE L1 5898 6135 -45 1761 171 0 30 chr21 21693697 21693996 -13213574 + AluJb SINE Alu 1 290 -22 1180 203 26 40 chr21 21693996 21694040 -13213530 + L1ME1 LINE L1 6135 6178 -2 660 217 14 0 chr21 21694127 21694265 -13213305 + MIR SINE MIR 3 142 -120 2351 86 0 7 chr21 21694269 21694570 -13213000 - AluSp SINE Alu -14 299 1 2230 104 7 0 chr21 21694594 21694901 -13212669 + AluSp SINE Alu 1 309 -4 2049 139 0 3 chr21 21696050 21696344 -13211226 + AluSg SINE Alu 1 293 -17 21 0 0 0 chr21 21696456 21696477 -13211093 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 21696554 21696576 -13210994 + AT_rich Low_complexity Low_complexity 1 22 0 651 215 28 23 chr21 21696647 21696824 -13210746 - MER104 DNA MER2_type -1 179 2 1375 126 20 106 chr21 21697288 21697413 -13210157 + AluSx SINE Alu 1 94 -218 2156 119 3 0 chr21 21697413 21697699 -13209871 + AluSx SINE Alu 1 287 -25 1375 126 20 106 chr21 21697699 21697828 -13209742 + AluSx SINE Alu 94 233 -79 934 226 0 11 chr21 21697975 21698152 -13209418 + FAM SINE Alu 1 175 0 2001 138 13 3 chr21 21699245 21699543 -13208027 + AluSx SINE Alu 8 308 -4 1283 248 145 36 chr21 21699563 21700058 -13207512 + MLT1G3 LTR MaLR 1 588 -2 851 88 0 2 chr21 21700266 21700505 -13207065 + AluSx SINE Alu 7 290 -20 1066 171 0 16 chr21 21700505 21700520 -13207050 + AluSx SINE Alu 119 133 -177 2192 76 38 21 chr21 21700520 21700811 -13206759 + AluY SINE Alu 1 296 -15 1066 171 0 16 chr21 21700811 21700982 -13206588 + AluSx SINE Alu 133 302 -8 683 229 47 77 chr21 21701321 21701661 -13205909 + L1ME LINE L1 867 1196 -5220 720 170 0 37 chr21 21701670 21701805 -13205765 + FLAM_A SINE Alu 8 137 -5 2451 69 16 0 chr21 21701824 21702128 -13205442 + AluY SINE Alu 1 309 -2 326 205 68 26 chr21 21702128 21702172 -13205398 + L1ME LINE L1 1241 1282 -5325 2111 108 0 4 chr21 21702172 21702451 -13205119 + AluSc SINE Alu 1 278 -31 192 97 0 0 chr21 21702454 21702485 -13205085 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 326 205 68 26 chr21 21702485 21702553 -13205017 + L1ME LINE L1 1283 1362 -5245 548 274 65 9 chr21 21702554 21702665 -13204905 + L1ME LINE L1 1266 1369 -4955 2244 104 16 13 chr21 21702665 21702972 -13204598 + AluSq SINE Alu 1 308 -5 548 274 65 9 chr21 21702972 21703075 -13204495 + L1ME LINE L1 1369 1492 -4832 2016 149 3 3 chr21 21703241 21703549 -13204021 + AluSx SINE Alu 1 308 -4 806 116 134 70 chr21 21703574 21703746 -13203824 + AluJo SINE Alu 121 303 -9 1650 183 101 16 chr21 21703751 21704240 -13203330 + L1MB8 LINE L1 5621 6161 -5 719 201 0 22 chr21 21704273 21704407 -13203163 - FLAM_C SINE Alu -2 131 1 597 224 37 14 chr21 21704422 21704572 -13202998 + L1ME LINE L1 1770 1897 -4529 2186 113 30 0 chr21 21704572 21704873 -13202697 + AluSq SINE Alu 1 310 -3 597 224 37 14 chr21 21704873 21704906 -13202664 + L1ME LINE L1 1897 1928 -4498 1883 142 4 4 chr21 21705016 21705297 -13202273 - AluSx SINE Alu -31 281 1 2151 104 0 3 chr21 21705425 21705714 -13201856 - AluSg1 SINE Alu -19 290 3 1968 119 0 0 chr21 21705743 21706011 -13201559 + AluY SINE Alu 1 268 -43 2048 114 38 0 chr21 21706182 21706471 -13201099 + AluSp SINE Alu 1 300 -13 2502 67 0 0 chr21 21706553 21706850 -13200720 + AluY SINE Alu 4 300 -11 305 254 28 42 chr21 21706949 21707081 -13200489 + L1ME LINE L1 5689 5822 -299 1669 147 52 0 chr21 21707089 21707361 -13200209 + AluJb SINE Alu 1 286 -26 1840 88 111 11 chr21 21707625 21707887 -13199683 + AluSq SINE Alu 1 288 -25 21 53 0 35 chr21 21707887 21707924 -13199646 + AT_rich Low_complexity Low_complexity 1 38 -17 2423 63 0 0 chr21 21707924 21708228 -13199342 + AluY SINE Alu 1 304 0 21 53 0 35 chr21 21708228 21708246 -13199324 + AT_rich Low_complexity Low_complexity 38 55 0 1953 142 10 3 chr21 21708256 21708558 -13199012 + AluSq SINE Alu 1 304 -9 228 172 0 35 chr21 21710114 21710172 -13197398 + (CGGGG)n Simple_repeat Simple_repeat 4 59 0 1874 148 31 3 chr21 21710873 21711163 -13196407 - AluSx SINE Alu -14 298 1 253 185 92 15 chr21 21711505 21711570 -13196000 - MLT1J LTR MaLR -434 77 8 1812 191 10 39 chr21 21712519 21712927 -13194643 - MSTD LTR MaLR 0 396 1 2200 119 0 7 chr21 21713012 21713314 -13194256 + AluSx SINE Alu 1 300 -12 2358 91 0 0 chr21 21713435 21713733 -13193837 + AluSg SINE Alu 1 298 -12 283 260 0 52 chr21 21714443 21714539 -13193031 - MLT1K LTR MaLR -3 585 495 249 171 0 0 chr21 21714558 21714599 -13192971 + MLT1A1 LTR MaLR 1 41 -324 1932 117 0 0 chr21 21714649 21714906 -13192664 + AluSg SINE Alu 1 257 -53 1815 152 64 0 chr21 21714910 21715073 -13192497 - AluJb SINE Alu -11 301 111 210 37 0 0 chr21 21715073 21715100 -13192470 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1815 152 64 0 chr21 21715100 21715219 -13192351 - AluJb SINE Alu -201 111 1 2305 98 3 0 chr21 21715253 21715548 -13192022 + AluSp SINE Alu 1 296 -17 2402 74 0 7 chr21 21715780 21716078 -13191492 - AluY SINE Alu -15 296 1 352 94 0 0 chr21 21716430 21716483 -13191087 + AluSp/q SINE Alu 242 294 -9 2352 100 0 3 chr21 21716493 21716793 -13190777 + AluSq SINE Alu 1 299 -14 1160 67 0 0 chr21 21717368 21717502 -13190068 + AluSc SINE Alu 1 134 -175 2210 107 0 7 chr21 21717502 21717635 -13189935 + AluSg SINE Alu 1 133 -177 2651 55 0 0 chr21 21717635 21717943 -13189627 + AluY SINE Alu 1 308 -3 2210 107 0 7 chr21 21717943 21718100 -13189470 + AluSg SINE Alu 133 289 -21 510 73 0 0 chr21 21719631 21719699 -13187871 - AluSg SINE Alu -7 304 237 997 122 0 14 chr21 21719713 21719860 -13187710 - AluSg SINE Alu -165 145 1 1928 158 3 0 chr21 21719860 21720163 -13187407 - AluJb SINE Alu -8 304 1 2380 86 23 0 chr21 21720176 21720477 -13187093 - AluSc SINE Alu -1 308 1 2165 91 47 0 chr21 21720562 21720838 -13186732 + AluSx SINE Alu 1 289 -23 354 240 73 0 chr21 21720895 21720991 -13186579 - MIR3 SINE MIR -28 180 78 385 191 0 67 chr21 21722375 21722411 -13185159 - MIR SINE MIR -41 221 184 2283 78 0 7 chr21 21722411 21722695 -13184875 - AluSx SINE Alu -12 300 19 385 191 0 67 chr21 21722695 21722763 -13184807 - MIR SINE MIR -78 184 124 2559 31 3 0 chr21 21723058 21723348 -13184222 + AluY SINE Alu 1 291 -20 2165 105 7 3 chr21 21723385 21723679 -13183891 + AluSx SINE Alu 1 295 -17 808 129 7 50 chr21 21723805 21723944 -13183626 + FLAM_C SINE Alu 1 133 0 2372 83 3 0 chr21 21724284 21724584 -13182986 + AluY SINE Alu 1 301 -10 2265 99 17 0 chr21 21724683 21724977 -13182593 - AluSx SINE Alu -13 299 1 929 148 43 19 chr21 21725138 21725300 -13182270 + FRAM SINE Alu 11 176 0 2125 109 13 0 chr21 21725304 21725608 -13181962 + L1PA14 LINE L1 5805 6112 -49 1882 174 36 51 chr21 21725710 21726101 -13181469 + MLT1B LTR MaLR 6 390 0 1658 199 7 0 chr21 21726942 21727233 -13180337 + AluJb SINE Alu 1 293 -19 2336 91 0 7 chr21 21727233 21727540 -13180030 + AluSx SINE Alu 1 305 -7 644 172 80 20 chr21 21727545 21727696 -13179874 + Charlie2 DNA MER1_type 1909 2068 -794 1205 83 0 0 chr21 21727759 21727904 -13179666 + AluSq/x SINE Alu 1 145 -168 2207 87 11 0 chr21 21727904 21728219 -13179351 + AluSx SINE Alu 3 320 0 2362 85 0 0 chr21 21728221 21728514 -13179056 + AluSg1 SINE Alu 3 295 -14 31 26 0 0 chr21 21728851 21728889 -13178681 + AT_rich Low_complexity Low_complexity 1 38 0 2165 128 3 0 chr21 21728889 21729185 -13178385 + AluSq SINE Alu 1 297 -16 1349 170 31 166 chr21 21729235 21729502 -13178068 - L1MB7 LINE L1 -10 6174 5872 2276 116 0 0 chr21 21729502 21729803 -13177767 - AluSx SINE Alu -11 301 1 1349 170 31 166 chr21 21729803 21729820 -13177750 - L1MB7 LINE L1 -312 5872 5854 1708 144 7 69 chr21 21729820 21729973 -13177597 - AluJo SINE Alu -25 287 126 2298 89 3 13 chr21 21729973 21730275 -13177295 - AluSx SINE Alu -13 299 1 1942 165 3 0 chr21 21730276 21730585 -13176985 - AluSx SINE Alu -2 310 1 1708 144 7 69 chr21 21730585 21730735 -13176835 - AluJo SINE Alu -185 127 1 1349 170 31 166 chr21 21730735 21730774 -13176796 - L1MB7 LINE L1 -330 5854 5811 2175 97 0 37 chr21 21730774 21730939 -13176631 - AluSc SINE Alu -20 289 138 2390 55 6 55 chr21 21730939 21731265 -13176305 - AluY SINE Alu -1 310 1 2175 97 0 37 chr21 21731265 21731399 -13176171 - AluSc SINE Alu -171 138 1 1695 159 51 3 chr21 21731403 21731698 -13175872 - AluJb SINE Alu -3 309 1 1349 170 31 166 chr21 21731698 21731721 -13175849 - L1MB7 LINE L1 -376 5808 5784 2289 95 17 0 chr21 21731721 21732016 -13175554 - AluSc SINE Alu -9 300 1 1349 170 31 166 chr21 21732016 21732178 -13175392 - L1MB7 LINE L1 -400 5784 5728 1962 118 14 0 chr21 21732392 21732671 -13174899 + AluSx SINE Alu 1 283 -29 2271 57 0 54 chr21 21733254 21733588 -13173982 - AluY SINE Alu 0 318 1 2228 93 3 14 chr21 21733596 21733885 -13173685 - AluSg SINE Alu -24 286 1 2277 88 7 3 chr21 21736215 21736512 -13171058 - AluSx SINE Alu -14 298 1 6837 103 32 10 chr21 21736653 21737609 -13169961 + L1MA3 LINE L1 5157 6143 -162 2197 112 0 34 chr21 21737609 21737932 -13169638 + AluSx SINE Alu 1 312 0 6837 103 32 10 chr21 21737932 21738099 -13169471 + L1MA3 LINE L1 6143 6305 0 315 116 0 0 chr21 21738165 21738208 -13169362 - L1PB4 LINE L1 -289 5867 5825 1652 210 6 20 chr21 21738411 21738586 -13168984 - L1PA16 LINE L1 -20 6146 5977 2423 87 3 0 chr21 21738586 21738885 -13168685 - AluSc SINE Alu -9 300 1 1652 210 6 20 chr21 21738885 21739057 -13168513 - L1PA16 LINE L1 -189 5977 5804 854 188 30 18 chr21 21739171 21739336 -13168234 + FAM SINE Alu 1 167 -8 2574 44 0 3 chr21 21740404 21740700 -13166870 - AluY SINE Alu -16 295 1 403 78 0 0 chr21 21740861 21740912 -13166658 - U6 snRNA snRNA -55 52 2 2205 92 0 14 chr21 21742091 21742385 -13165185 + AluSc SINE Alu 18 307 -2 1717 158 41 27 chr21 21742663 21742955 -13164615 - AluJb SINE Alu -16 296 1 2071 131 17 0 chr21 21742991 21743154 -13164416 - AluSx SINE Alu -17 295 123 429 36 0 0 chr21 21743154 21743209 -13164361 + (TG)n Simple_repeat Simple_repeat 2 56 0 2071 131 17 0 chr21 21743209 21743335 -13164235 - AluSx SINE Alu -189 123 1 2309 108 0 0 chr21 21743363 21743668 -13163902 + AluSg SINE Alu 4 308 -2 1769 187 0 7 chr21 21744054 21744359 -13163211 + AluJb SINE Alu 1 303 -9 373 224 13 0 chr21 21744600 21744676 -13162894 - MER63 DNA MER1_type -320 742 40 2373 81 0 43 chr21 21745430 21745753 -13161817 + AluSc SINE Alu 1 309 0 2532 87 0 0 chr21 21746036 21746348 -13161222 + AluSx SINE Alu 1 312 0 2233 119 10 0 chr21 21748271 21748573 -13158997 + AluSg SINE Alu 1 305 -5 2469 73 0 3 chr21 21749342 21749642 -13157928 + AluY SINE Alu 1 299 -12 1599 144 4 12 chr21 21749652 21749895 -13157675 + AluJb SINE Alu 37 277 -35 25 0 0 0 chr21 21749895 21749920 -13157650 + AT_rich Low_complexity Low_complexity 1 25 0 2496 69 0 3 chr21 21751420 21751723 -13155847 + AluY SINE Alu 1 302 -9 2073 123 34 3 chr21 21751748 21752041 -13155529 + AluSq SINE Alu 1 302 -11 25 31 0 0 chr21 21752392 21752424 -13155146 + AT_rich Low_complexity Low_complexity 1 32 0 336 263 25 34 chr21 21752485 21752603 -13154967 - MER5B DNA MER1_type -60 118 2 965 189 24 0 chr21 21752677 21752883 -13154687 - L1MB3 LINE L1 -2 6181 5971 2410 97 0 0 chr21 21753755 21754065 -13153505 + AluSq SINE Alu 1 310 -3 1362 142 19 9 chr21 21754338 21754549 -13153021 + AluJb SINE Alu 1 213 -99 207 83 83 21 chr21 21754560 21754608 -13152962 + A-rich Low_complexity Low_complexity 5 55 0 1224 177 165 8 chr21 21755175 21755292 -13152278 + AluJo SINE Alu 1 98 -204 216 0 0 0 chr21 21755292 21755316 -13152254 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 1224 177 165 8 chr21 21755316 21755452 -13152118 + AluJo SINE Alu 98 294 -8 1676 112 50 0 chr21 21755509 21755751 -13151819 - AluSc SINE Alu -16 293 40 2445 71 7 0 chr21 21755939 21756236 -13151334 - AluY SINE Alu -12 299 1 2089 125 0 17 chr21 21756246 21756543 -13151027 - AluSx SINE Alu -20 292 1 2016 137 14 0 chr21 21757306 21757599 -13149971 + AluSx SINE Alu 1 297 -15 201 147 0 0 chr21 21758681 21758715 -13148855 + (A)n Simple_repeat Simple_repeat 1 34 0 260 179 0 0 chr21 21759436 21759475 -13148095 - Alu SINE Alu -263 39 1 2344 101 0 19 chr21 21759520 21759828 -13147742 - AluSp SINE Alu -11 302 1 2319 96 3 0 chr21 21759982 21760284 -13147286 + AluSc SINE Alu 1 303 -6 180 0 0 0 chr21 21761639 21761659 -13145911 + (T)n Simple_repeat Simple_repeat 1 20 0 2224 60 0 21 chr21 21763227 21763508 -13144062 + AluY SINE Alu 1 275 -36 330 91 0 0 chr21 21763510 21763565 -13144005 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 1811 156 0 0 chr21 21763705 21763975 -13143595 + AluJb SINE Alu 14 283 -29 1884 144 7 14 chr21 21764293 21764584 -13142986 - AluJb SINE Alu -23 289 1 242 136 91 0 chr21 21765204 21765248 -13142322 + MIR3 SINE MIR 127 174 -34 254 290 6 86 chr21 21765740 21765815 -13141755 - L2 LINE L2 -6 3307 3250 2356 83 0 13 chr21 21765815 21766115 -13141455 + AluSq SINE Alu 1 296 -17 254 290 6 86 chr21 21766115 21766201 -13141369 - L2 LINE L2 -63 3250 3159 2589 151 114 10 chr21 21766539 21767037 -13140533 - MER44D DNA MER2_type 0 605 1 387 316 78 39 chr21 21767454 21767736 -13139834 - L2 LINE L2 -33 3280 2988 2262 106 7 3 chr21 21768030 21768332 -13139238 + AluSx SINE Alu 1 303 -9 1151 159 0 22 chr21 21768420 21768602 -13138968 - AluJo SINE Alu -134 178 1 2317 98 0 0 chr21 21768854 21769149 -13138421 - AluY SINE Alu -16 295 1 1999 135 10 3 chr21 21769480 21769776 -13137794 + AluSx SINE Alu 1 298 -14 446 231 0 8 chr21 21770365 21770486 -13137084 - MER58 DNA MER1_type -129 212 93 524 245 65 0 chr21 21770922 21771061 -13136509 - MIR SINE MIR -86 176 29 195 42 0 0 chr21 21771212 21771236 -13136334 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1834 95 4 8 chr21 21771239 21771492 -13136078 - AluSx SINE Alu -37 275 24 205 287 35 56 chr21 21771620 21771763 -13135807 + MIR SINE MIR 13 152 -110 351 176 171 7 chr21 21775190 21775349 -13132221 + MIR SINE MIR 51 261 -1 2267 99 0 3 chr21 21776567 21776860 -13130710 + AluSq SINE Alu 1 292 -21 2318 69 13 28 chr21 21777033 21777351 -13130219 - AluSq SINE Alu 0 313 1 2470 57 0 28 chr21 21777775 21778092 -13129478 - AluY SINE Alu -3 308 1 442 238 275 26 chr21 21778609 21778798 -13128772 - MIR SINE MIR -3 259 24 2111 138 14 0 chr21 21779151 21779442 -13128128 - AluSg SINE Alu -15 295 1 285 269 0 0 chr21 21779616 21779694 -13127876 + A-rich Low_complexity Low_complexity 1 78 0 344 263 0 0 chr21 21785161 21785294 -13122276 + (CCG)n Simple_repeat Simple_repeat 1 133 0 2329 84 7 3 chr21 21786500 21786798 -13120772 + AluSx SINE Alu 1 299 -13 462 152 13 152 chr21 21788978 21789129 -13118441 + L2 LINE L2 3182 3311 -2 189 74 0 0 chr21 21790638 21790665 -13116905 + (TA)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr21 21791886 21791914 -13115656 + AT_rich Low_complexity Low_complexity 1 28 0 257 208 0 0 chr21 21794323 21794371 -13113199 - Charlie5 DNA MER1_type -2526 86 39 2316 89 3 3 chr21 21794648 21794951 -13112619 + AluSp SINE Alu 1 303 -10 24 0 0 0 chr21 21797348 21797372 -13110198 + AT_rich Low_complexity Low_complexity 1 24 0 337 241 164 17 chr21 21797505 21797621 -13109949 - L2 LINE L2 -2 3311 3179 649 224 12 77 chr21 21797631 21797705 -13109865 - MIR SINE MIR -87 175 98 1976 125 17 0 chr21 21797705 21797992 -13109578 + AluSg SINE Alu 1 292 -18 649 224 12 77 chr21 21797992 21798087 -13109483 - MIR SINE MIR -164 98 17 2209 88 3 14 chr21 21798280 21798575 -13108995 + AluSp SINE Alu 1 292 -21 251 28 28 0 chr21 21802238 21802274 -13105296 + (TA)n Simple_repeat Simple_repeat 2 38 0 1131 175 63 5 chr21 21804596 21804819 -13102751 + MER46A DNA MER2_type 1 236 0 2201 89 20 0 chr21 21805113 21805405 -13102165 - AluSx SINE Alu -14 298 1 22 0 0 0 chr21 21805471 21805493 -13102077 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 21805981 21806004 -13101566 + AT_rich Low_complexity Low_complexity 1 23 0 882 0 0 0 chr21 21807674 21807772 -13099798 + (CA)n Simple_repeat Simple_repeat 2 99 0 2131 111 7 7 chr21 21808924 21809221 -13098349 + AluSx SINE Alu 1 297 -15 1473 128 0 10 chr21 21810005 21810209 -13097361 + AluSx SINE Alu 24 225 -87 621 140 0 0 chr21 21810209 21810302 -13097268 + AluSg/x SINE Alu 191 283 -26 279 0 0 0 chr21 21810309 21810340 -13097230 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 1118 79 18 61 chr21 21810346 21810511 -13097059 + AluSg SINE Alu 1 158 -152 234 0 0 0 chr21 21810533 21810559 -13097011 + (A)n Simple_repeat Simple_repeat 1 26 0 575 166 185 19 chr21 21810559 21810716 -13096854 + AluJb SINE Alu 120 302 -10 1663 123 8 0 chr21 21810735 21810979 -13096591 + AluSg/x SINE Alu 65 310 0 1055 150 0 53 chr21 21810981 21811168 -13096402 + AluSg/x SINE Alu 119 295 -14 336 259 115 0 chr21 21812493 21812632 -13094938 + MER112 DNA MER1_type 94 248 -12 1813 156 68 19 chr21 21812764 21812991 -13094579 + MER1B DNA MER1_type 1 250 -2460 2594 55 0 0 chr21 21812991 21813298 -13094272 + AluY SINE Alu 3 309 -2 1813 156 68 19 chr21 21813298 21813391 -13094179 + MER1B DNA MER1_type 250 337 0 288 0 0 0 chr21 21814084 21814116 -13093454 + (TA)n Simple_repeat Simple_repeat 1 32 0 2533 50 0 7 chr21 21814117 21814415 -13093155 - AluY SINE Alu -15 296 1 1598 165 61 25 chr21 21815303 21815582 -13091988 - AluJo SINE Alu -23 289 1 1900 115 3 30 chr21 21816704 21817009 -13090561 - AluSx SINE Alu -15 297 1 208 225 12 38 chr21 21818754 21818834 -13088736 + C-rich Low_complexity Low_complexity 5 82 0 2214 108 3 0 chr21 21820099 21820386 -13087184 - AluSx SINE Alu -24 288 1 2170 100 10 3 chr21 21820495 21820785 -13086785 - AluSq SINE Alu -21 292 1 588 115 0 0 chr21 21821033 21821111 -13086459 + MADE1 DNA Mariner 3 80 0 527 188 10 10 chr21 21821743 21821839 -13085731 + MER2 DNA MER2_type 1 96 -248 1200 139 65 14 chr21 21821839 21822055 -13085515 + AluJo SINE Alu 86 312 0 858 181 150 26 chr21 21822055 21822213 -13085357 + MER2 DNA MER2_type 88 284 -60 1775 147 27 7 chr21 21822213 21822506 -13085064 - AluJo SINE Alu -13 299 1 858 181 150 26 chr21 21822506 21822573 -13084997 + MER2 DNA MER2_type 284 341 -3 2293 126 0 0 chr21 21822839 21823149 -13084421 + AluSx SINE Alu 1 310 -2 2466 68 0 0 chr21 21823181 21823475 -13084095 - AluY SINE Alu -17 294 1 2340 97 7 7 chr21 21823770 21824080 -13083490 + AluSx SINE Alu 1 310 -2 2207 94 3 30 chr21 21824226 21824524 -13083046 - AluSc SINE Alu -14 295 6 21 36 0 0 chr21 21824536 21824564 -13083006 + AT_rich Low_complexity Low_complexity 1 28 0 1292 113 0 0 chr21 21824708 21824876 -13082694 - AluSc SINE Alu -7 302 135 639 236 77 6 chr21 21825255 21825437 -13082133 + MARNA DNA Mariner 290 484 -102 709 232 70 11 chr21 21825509 21825694 -13081876 + MIR SINE MIR 35 230 -32 2300 86 0 0 chr21 21826431 21826744 -13080826 + AluSq SINE Alu 7 319 0 2067 129 0 23 chr21 21826929 21827239 -13080331 - AluSx SINE Alu -9 303 1 729 169 76 0 chr21 21827555 21827673 -13079897 - FLAM_A SINE Alu -4 129 3 2516 43 3 10 chr21 21827684 21827983 -13079587 - AluY SINE Alu -14 297 1 1473 91 91 0 chr21 21828781 21828991 -13078579 - MER30 DNA MER1_type 0 230 2 1700 177 7 13 chr21 21829704 21830003 -13077567 - AluJo SINE Alu -15 297 1 273 167 56 0 chr21 21830078 21830132 -13077438 - Tigger5 DNA MER2_type -3 2320 2264 2277 81 7 14 chr21 21830699 21830996 -13076574 - AluY SINE Alu -16 295 1 2311 99 3 0 chr21 21831003 21831306 -13076264 - AluSq SINE Alu -9 304 1 263 320 62 47 chr21 21831415 21831543 -13076027 + MIR SINE MIR 1 130 -132 27 0 0 0 chr21 21831657 21831684 -13075886 + AT_rich Low_complexity Low_complexity 1 27 0 1894 154 7 7 chr21 21831704 21832002 -13075568 + AluJb SINE Alu 1 298 -14 838 142 7 64 chr21 21832068 21832209 -13075361 - FLAM_C SINE Alu 0 133 1 221 244 130 78 chr21 21833630 21833745 -13073825 + L2 LINE L2 2496 2616 -698 2139 84 56 0 chr21 21834040 21834155 -13073415 + AluY SINE Alu 1 108 -203 2298 65 41 3 chr21 21834155 21834449 -13073121 + AluY SINE Alu 1 305 -6 2139 84 56 0 chr21 21834449 21834617 -13072953 + AluY SINE Alu 108 300 -11 1345 244 82 38 chr21 21834634 21835374 -13072196 - L1ME3A LINE L1 -234 5936 5164 309 351 23 8 chr21 21835378 21835509 -13072061 + L2 LINE L2 2687 2819 -495 2322 84 3 7 chr21 21835597 21835893 -13071677 - AluSx SINE Alu -17 295 1 2315 103 0 0 chr21 21836413 21836705 -13070865 + AluSx SINE Alu 1 292 -20 2230 97 0 23 chr21 21836797 21837107 -13070463 + AluSp SINE Alu 1 303 -10 1849 161 23 0 chr21 21837431 21837730 -13069840 + AluJo SINE Alu 6 311 -1 23 54 0 0 chr21 21837740 21837777 -13069793 + AT_rich Low_complexity Low_complexity 1 37 0 196 321 116 18 chr21 21837867 21837979 -13069591 - MIR3 SINE MIR -11 197 75 5363 143 66 18 chr21 21837999 21838242 -13069328 - L1MA7 LINE L1 -4 6287 6057 2360 92 0 0 chr21 21838242 21838548 -13069022 + AluSq SINE Alu 1 306 -7 5363 143 66 18 chr21 21838548 21839385 -13068185 - L1MA7 LINE L1 -234 6057 5157 1422 185 4 48 chr21 21839411 21839681 -13067889 - AluJb SINE Alu -54 258 1 2376 72 0 31 chr21 21839753 21840073 -13067497 - AluY SINE Alu -1 310 1 835 124 48 76 chr21 21840073 21840218 -13067352 - FLAM_C SINE Alu -1 142 2 1821 142 39 4 chr21 21840241 21840522 -13067048 - AluSx SINE Alu -18 294 4 2392 82 10 0 chr21 21840797 21841100 -13066470 - AluSx SINE Alu -6 306 1 42 82 0 0 chr21 21841446 21841544 -13066026 + AT_rich Low_complexity Low_complexity 1 98 0 897 277 78 42 chr21 21841907 21842357 -13065213 - L1ME3A LINE L1 -208 5962 5486 2273 90 3 13 chr21 21842357 21842658 -13064912 - AluSx SINE Alu -14 298 1 897 277 78 42 chr21 21842658 21842773 -13064797 - L1ME3A LINE L1 -684 5486 5377 1871 145 38 7 chr21 21842906 21843195 -13064375 - AluSx SINE Alu -14 298 1 2346 96 0 3 chr21 21843960 21844261 -13063309 + AluSg SINE Alu 1 300 -10 1777 187 3 16 chr21 21844273 21844583 -13062987 + AluJo SINE Alu 1 306 -6 2323 99 0 0 chr21 21844647 21844939 -13062631 - AluSg SINE Alu -18 292 1 1943 139 10 7 chr21 21845212 21845515 -13062055 - AluJb SINE Alu 0 312 9 2407 15 19 0 chr21 21846007 21846273 -13061297 - L1PA2 LINE L1 -7 6148 5878 2357 102 3 0 chr21 21846356 21846661 -13060909 - AluSp SINE Alu -7 306 1 26 88 0 0 chr21 21846833 21846901 -13060669 + AT_rich Low_complexity Low_complexity 1 68 0 1899 155 7 0 chr21 21847094 21847385 -13060185 - AluSq SINE Alu -20 293 1 1794 185 46 34 chr21 21847537 21847947 -13059623 - LTR2B LTR ERV1 0 490 76 2615 56 0 0 chr21 21848077 21848382 -13059188 + AluY SINE Alu 1 305 -6 390 316 42 30 chr21 21848858 21849095 -13058475 + L2 LINE L2 2046 2285 -1029 720 154 81 0 chr21 21849634 21849757 -13057813 - FLAM_C SINE Alu 0 133 1 1951 112 11 7 chr21 21850598 21850875 -13056695 + AluSx SINE Alu 1 278 -34 224 29 0 29 chr21 21850875 21850909 -13056661 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2642 17 10 3 chr21 21850972 21851274 -13056296 - AluY SINE Alu -7 304 1 1301 101 59 101 chr21 21851274 21851419 -13056151 + MER30 DNA MER1_type 3 136 -94 2462 52 0 3 chr21 21851419 21851710 -13055860 - AluY SINE Alu -21 290 1 1301 101 59 101 chr21 21851710 21851802 -13055768 + MER30 DNA MER1_type 136 230 0 647 152 0 83 chr21 21851802 21851934 -13055636 + FLAM_A SINE Alu 22 142 0 2452 85 0 3 chr21 21853026 21853333 -13054237 - AluSc SINE Alu -3 306 1 302 338 93 13 chr21 21853386 21853537 -13054033 - L1ME4a LINE L1 -226 5895 5733 25 0 0 0 chr21 21854168 21854193 -13053377 + AT_rich Low_complexity Low_complexity 1 25 0 2143 114 3 16 chr21 21854334 21854640 -13052930 + AluSq SINE Alu 1 302 -11 2494 64 0 0 chr21 21855228 21855523 -13052047 - AluY SINE Alu -15 296 2 1911 169 0 0 chr21 21855545 21855853 -13051717 - AluJo SINE Alu -4 308 1 27 0 0 0 chr21 21855885 21855912 -13051658 + AT_rich Low_complexity Low_complexity 1 27 0 814 161 0 0 chr21 21855912 21856030 -13051540 - FLAM_C SINE Alu -15 118 1 2078 96 55 17 chr21 21856037 21856328 -13051242 - AluSx SINE Alu -10 302 1 2299 119 0 0 chr21 21856484 21856796 -13050774 + AluSx SINE Alu 1 312 0 568 159 0 0 chr21 21857222 21857310 -13050260 - AluJ SINE Alu -14 298 211 1004 135 39 6 chr21 21857312 21857468 -13050102 - AluJ SINE Alu -151 161 1 2362 95 0 3 chr21 21857809 21858114 -13049456 - AluY SINE Alu -7 304 1 5554 139 6 34 chr21 21858292 21858665 -13048905 - L1 LINE L1 -1402 4744 4362 1816 130 14 34 chr21 21858665 21858958 -13048612 - AluJb SINE Alu -5 307 21 5554 139 6 34 chr21 21858958 21859017 -13048553 - L1 LINE L1 -1784 4362 4303 1509 153 46 29 chr21 21859017 21859321 -13048249 + AluJb SINE Alu 1 309 0 5554 139 6 34 chr21 21859321 21859335 -13048235 - L1 LINE L1 -1843 4303 4290 2194 114 0 3 chr21 21859335 21859632 -13047938 - AluSx SINE Alu -16 296 1 5554 139 6 34 chr21 21859632 21860165 -13047405 - L1 LINE L1 -1856 4290 3789 5417 136 18 22 chr21 21860147 21860373 -13047197 + L1MA6 LINE L1 5397 5622 -678 2264 112 0 7 chr21 21860373 21860677 -13046893 + AluSx SINE Alu 1 302 -10 5417 136 18 22 chr21 21860677 21861358 -13046212 + L1MA6 LINE L1 5622 6300 0 26 30 0 0 chr21 21861628 21861661 -13045909 + AT_rich Low_complexity Low_complexity 1 33 0 2230 109 0 28 chr21 21862110 21862430 -13045140 + AluSp SINE Alu 1 311 -2 2308 94 0 0 chr21 21862449 21862747 -13044823 - AluSx SINE Alu -14 298 1 1511 222 78 16 chr21 21862916 21863290 -13044280 - L1ME3A LINE L1 -106 6064 5668 2196 106 20 0 chr21 21863489 21863782 -13043788 - AluSc SINE Alu -10 299 1 829 226 49 0 chr21 21863829 21863993 -13043577 - MER45A DNA AcHobo -5 173 2 24 0 0 0 chr21 21864661 21864685 -13042885 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr21 21864950 21864975 -13042595 + (TA)n Simple_repeat Simple_repeat 1 25 0 2557 46 0 13 chr21 21865416 21865723 -13041847 - AluY SINE Alu -8 303 1 31 26 0 0 chr21 21865730 21865768 -13041802 + AT_rich Low_complexity Low_complexity 1 38 0 2175 90 11 0 chr21 21865773 21866078 -13041492 + AluSc SINE Alu 1 308 0 369 166 19 44 chr21 21866183 21866446 -13041124 + AluJo SINE Alu 2 282 -20 1337 76 12 0 chr21 21866882 21867053 -13040517 - AluY SINE Alu -16 295 123 2589 50 0 0 chr21 21867234 21867531 -13040039 + AluY SINE Alu 2 298 -13 276 149 0 0 chr21 21867830 21867877 -13039693 + (TA)n Simple_repeat Simple_repeat 1 47 0 2379 89 0 7 chr21 21868280 21868582 -13038988 - AluSg SINE Alu -10 300 1 253 288 98 60 chr21 21868819 21869034 -13038536 + L3 LINE CR1 1349 1571 -6 2451 80 0 3 chr21 21869895 21870195 -13037375 - AluSx SINE Alu -13 299 1 635 233 119 19 chr21 21870448 21870658 -13036912 + MIR SINE MIR 29 259 -3 968 151 35 13 chr21 21870804 21871140 -13036430 + MER33 DNA MER1_type 18 358 -5 284 143 18 0 chr21 21871174 21871230 -13036340 + MER5A DNA MER1_type 39 95 -94 186 118 0 0 chr21 21872537 21872571 -13034999 + (GGGA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr21 21873079 21873101 -13034469 + GC_rich Low_complexity Low_complexity 1 22 0 23 78 0 0 chr21 21873167 21873218 -13034352 + GC_rich Low_complexity Low_complexity 1 51 0 23 33 0 0 chr21 21873330 21873360 -13034210 + GC_rich Low_complexity Low_complexity 1 30 0 1615 183 10 10 chr21 21874892 21875187 -13032383 - AluJo SINE Alu -11 301 7 276 271 0 14 chr21 21875364 21875434 -13032136 + MER5A DNA MER1_type 7 75 -114 1401 178 14 44 chr21 21875434 21875727 -13031843 + AluJo SINE Alu 5 288 -24 263 302 76 8 chr21 21875755 21875874 -13031696 + MER5A DNA MER1_type 63 189 0 343 174 186 12 chr21 21876020 21876106 -13031464 + L2 LINE L2 3209 3309 -4 1191 126 0 0 chr21 21876917 21877076 -13030494 + FRAM SINE Alu 9 167 -9 530 310 41 67 chr21 21877413 21877559 -13030011 - L1MC4a LINE L1 -1884 5924 5776 1999 154 0 7 chr21 21877559 21877865 -13029705 - AluSx SINE Alu -8 304 1 530 310 41 67 chr21 21877865 21878153 -13029417 - L1MC4a LINE L1 -2032 5776 5501 1318 175 78 11 chr21 21878639 21878908 -13028662 + AluJo SINE Alu 6 292 -20 264 152 45 0 chr21 21878923 21878989 -13028581 + GA-rich Low_complexity Low_complexity 2 70 0 2277 96 0 43 chr21 21879804 21880128 -13027442 + AluSg SINE Alu 1 310 0 206 121 0 0 chr21 21880465 21880498 -13027072 + (TG)n Simple_repeat Simple_repeat 2 34 0 295 301 0 0 chr21 21881062 21881175 -13026395 + L2 LINE L2 3190 3302 -11 422 202 76 25 chr21 21882042 21882161 -13025409 - L1ME4a LINE L1 -2 6119 5995 235 139 0 0 chr21 21882484 21882520 -13025050 - L1ME4a LINE L1 -214 5907 5872 2237 117 7 0 chr21 21883064 21883364 -13024206 - AluSx SINE Alu -10 302 1 2540 69 0 0 chr21 21883587 21883891 -13023679 - AluY SINE Alu -7 304 1 675 208 0 0 chr21 21883895 21884015 -13023555 - FLAM_C SINE Alu -13 130 11 1392 193 36 36 chr21 21884080 21884425 -13023145 - AluJb SINE Alu 0 345 1 1789 142 13 59 chr21 21885492 21885795 -13021775 - AluSx SINE Alu -16 296 8 837 129 0 16 chr21 21886612 21886736 -13020834 - AluSg/x SINE Alu -21 289 168 294 29 0 0 chr21 21886765 21886800 -13020770 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2153 90 0 35 chr21 21886800 21887090 -13020480 - AluSx SINE Alu -32 280 1 1337 161 65 15 chr21 21887090 21887351 -13020219 - L1PA16 LINE L1 0 6166 5893 1737 138 72 45 chr21 21887643 21887709 -13019861 - MER7A DNA MER2_type -2698 340 277 2573 136 25 32 chr21 21887709 21887773 -13019797 - Tigger2a DNA MER2_type -2276 432 369 1737 179 3 3 chr21 21887773 21888064 -13019506 + AluJo SINE Alu 1 291 -21 2573 136 25 32 chr21 21888064 21888433 -13019137 - Tigger2a DNA MER2_type -2339 369 2 1737 138 72 45 chr21 21888433 21888699 -13018871 - MER7A DNA MER2_type -2761 277 1 865 233 52 51 chr21 21888907 21889624 -13017946 + MER21B LTR ERV1 29 749 -114 1690 168 46 33 chr21 21889775 21890078 -13017492 - AluJb SINE Alu -5 307 1 5965 186 62 21 chr21 21890355 21891672 -13015898 - Charlie1a DNA MER1_type -2 1453 83 1926 118 65 22 chr21 21891672 21891995 -13015575 + THE1C LTR MaLR 1 337 -38 355 208 52 13 chr21 21892016 21892093 -13015477 - Charlie1a DNA MER1_type -1375 80 1 2376 78 10 3 chr21 21893675 21893970 -13013600 - AluSp SINE Alu -16 297 1 752 179 66 0 chr21 21894161 21894312 -13013258 - MSTB1 LTR MaLR 0 432 272 385 197 0 0 chr21 21894322 21894393 -13013177 + L1M4 LINE L1 5500 5570 -604 1202 142 53 45 chr21 21894395 21894641 -13012929 - MSTB1 LTR MaLR -166 266 19 723 176 114 23 chr21 21894646 21894822 -13012748 + MIR SINE MIR 71 262 0 2448 81 0 0 chr21 21895052 21895349 -13012221 + AluSg SINE Alu 1 297 -13 2956 194 57 65 chr21 21895362 21896001 -13011569 + L1MB5 LINE L1 5304 5936 -238 2168 124 0 7 chr21 21896001 21896300 -13011270 - AluSx SINE Alu -15 297 1 2956 194 57 65 chr21 21896300 21896538 -13011032 + L1MB5 LINE L1 5936 6174 0 1381 134 26 108 chr21 21896870 21897197 -13010373 - AluJb SINE Alu 0 302 1 390 209 6 123 chr21 21897197 21897360 -13010210 + Charlie1a DNA MER1_type 102 245 -1210 503 103 0 0 chr21 21897359 21897427 -13010143 + Charlie1a DNA MER1_type 1383 1450 -5 462 286 105 0 chr21 21897673 21897844 -13009726 - MIR SINE MIR -68 194 6 2186 112 7 0 chr21 21899166 21899452 -13008118 - AluSx SINE Alu -24 288 1 2330 87 0 19 chr21 21899498 21899810 -13007760 - AluSg SINE Alu -4 306 1 1506 213 27 3 chr21 21900149 21900445 -13007125 + AluJo SINE Alu 1 303 -9 948 274 138 0 chr21 21900994 21901319 -13006251 - MER20B DNA MER1_type -414 370 1 1676 103 122 8 chr21 21901340 21901626 -13005944 - AluSq SINE Alu 0 313 1 1460 81 59 0 chr21 21901675 21901887 -13005683 + AluSg/x SINE Alu 84 306 0 2010 70 103 7 chr21 21902030 21902302 -13005268 + AluSp SINE Alu 1 298 -15 3610 173 86 23 chr21 21902467 21902784 -13004786 + L1MA9 LINE L1 5413 5709 -603 2290 85 3 0 chr21 21902784 21903077 -13004493 - AluSc SINE Alu -14 295 2 3610 173 86 23 chr21 21903077 21903570 -13004000 + L1MA9 LINE L1 5709 6274 -38 526 228 0 0 chr21 21904463 21904564 -13003006 - MER5A DNA MER1_type -88 101 1 23 33 0 0 chr21 21904782 21904812 -13002758 + AT_rich Low_complexity Low_complexity 1 30 0 2232 110 0 13 chr21 21905351 21905660 -13001910 + AluY SINE Alu 1 305 -6 272 264 132 11 chr21 21905763 21905945 -13001625 - L1P1 LINE L1 -677 5478 5275 836 92 0 0 chr21 21906091 21906211 -13001359 - AluSq SINE Alu 0 313 194 1033 128 0 0 chr21 21906211 21906352 -13001218 - AluSq SINE Alu -172 141 1 812 164 0 0 chr21 21906475 21906597 -13000973 - FLAM_C SINE Alu -11 122 1 1044 69 0 0 chr21 21906843 21906974 -13000596 - L1PA5 LINE L1 -252 5902 5772 2122 53 0 4 chr21 21906974 21907238 -13000332 + L1PA5 LINE L1 5891 6153 -1 1124 307 58 43 chr21 21907291 21907409 -13000161 + L2 LINE L2 2243 2358 -956 2088 140 3 0 chr21 21907409 21907709 -12999861 - AluSx SINE Alu -11 301 1 1124 307 58 43 chr21 21907709 21908128 -12999442 + L2 LINE L2 2358 2788 -526 457 247 75 67 chr21 21908300 21908555 -12999015 + L2 LINE L2 3020 3276 -37 1454 86 0 0 chr21 21908806 21908981 -12998589 - AluSg/x SINE Alu -36 274 100 2414 63 20 3 chr21 21909767 21910066 -12997504 - AluY SINE Alu -7 304 1 2236 125 3 0 chr21 21910388 21910699 -12996871 - AluSx SINE Alu 0 312 1 335 241 51 0 chr21 21910981 21911060 -12996510 - MLT1I LTR MaLR -3 406 324 320 238 0 16 chr21 21911100 21911163 -12996407 - MLT1I LTR MaLR -250 159 98 181 259 0 37 chr21 21911438 21911492 -12996078 + L2 LINE L2 3220 3271 -1 871 96 9 0 chr21 21911517 21911632 -12995938 + AluSg/x SINE Alu 180 295 -15 396 0 0 0 chr21 21911685 21911729 -12995841 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2412 72 10 3 chr21 21911732 21912036 -12995534 - AluY SINE Alu -5 306 1 2427 80 3 6 chr21 21912274 21912585 -12994985 - AluSp SINE Alu -3 310 1 1840 141 24 10 chr21 21912587 21912877 -12994693 - AluSx SINE Alu -5 307 14 444 186 205 26 chr21 21915025 21915181 -12992389 - L1MC5 LINE L1 -37 7924 7741 198 0 0 0 chr21 21915685 21915707 -12991863 + (A)n Simple_repeat Simple_repeat 1 22 0 1105 104 0 7 chr21 21917117 21917261 -12990309 + AluSq/x SINE Alu 1 143 -170 1404 157 0 4 chr21 21917267 21917497 -12990073 + AluSq SINE Alu 85 313 0 2021 106 32 51 chr21 21918870 21919181 -12988389 - AluSq SINE Alu -8 305 1 1470 168 48 31 chr21 21919461 21919752 -12987818 + AluJo SINE Alu 1 296 -16 2325 109 0 6 chr21 21919754 21920067 -12987503 + AluSx SINE Alu 1 311 -1 2135 131 20 7 chr21 21920070 21920375 -12987195 + AluSx SINE Alu 1 309 -3 2390 61 3 3 chr21 21920387 21920680 -12986890 + AluY SINE Alu 1 293 -18 1102 144 0 53 chr21 21920680 21920844 -12986726 + AluSg/x SINE Alu 132 286 -24 531 45 0 0 chr21 21920844 21920910 -12986660 + (TA)n Simple_repeat Simple_repeat 1 66 0 1102 144 0 53 chr21 21920910 21920933 -12986637 + AluSg/x SINE Alu 286 309 -1 1767 163 105 67 chr21 21921474 21921670 -12985900 - MER31B LTR ERV1 0 466 279 1633 202 89 11 chr21 21921670 21922017 -12985553 - MLT1A2 LTR MaLR 0 374 1 1767 163 105 67 chr21 21922017 21922269 -12985301 - MER31B LTR ERV1 -187 279 1 1989 102 6 84 chr21 21922841 21923164 -12984406 - AluSx SINE Alu -14 298 1 266 0 29 0 chr21 21923396 21923430 -12984140 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2001 142 0 0 chr21 21923444 21923725 -12983845 - AluSq SINE Alu -32 281 1 660 260 36 49 chr21 21924055 21924093 -12983477 - L1ME LINE L1 -301 5820 5783 1491 158 33 82 chr21 21924093 21924397 -12983173 - AluJo SINE Alu -23 289 1 660 260 36 49 chr21 21924397 21924581 -12982989 - L1ME LINE L1 -338 5783 5601 2311 83 13 0 chr21 21924607 21924907 -12982663 + AluSx SINE Alu 1 304 -8 1401 160 58 36 chr21 21924908 21925183 -12982387 - AluJo SINE Alu -31 281 1 1852 122 51 48 chr21 21927155 21927450 -12980120 - AluSx SINE Alu -16 296 1 21 0 0 0 chr21 21927701 21927722 -12979848 + AT_rich Low_complexity Low_complexity 1 21 0 29 28 0 0 chr21 21929359 21929395 -12978175 + AT_rich Low_complexity Low_complexity 1 36 0 1659 164 51 0 chr21 21929519 21929793 -12977777 + AluJb SINE Alu 1 288 -24 1491 159 27 27 chr21 21929833 21930129 -12977441 - AluJo SINE Alu -16 296 1 2276 108 0 6 chr21 21930138 21930453 -12977117 - AluSq SINE Alu 0 313 1 424 173 12 25 chr21 21931009 21931020 -12976550 - AluY SINE Alu -13 298 288 351 0 0 0 chr21 21931020 21931059 -12976511 + (TG)n Simple_repeat Simple_repeat 2 40 0 424 173 12 25 chr21 21931059 21931128 -12976442 - AluY SINE Alu -23 288 219 1116 169 0 110 chr21 21931257 21931493 -12976077 - AluJb SINE Alu -102 210 1 2099 129 0 7 chr21 21931579 21931874 -12975696 + AluSx SINE Alu 1 293 -19 2027 117 3 0 chr21 21931880 21932162 -12975408 + AluSq SINE Alu 27 309 -4 2367 99 0 3 chr21 21932172 21932485 -12975085 - AluSx SINE Alu 0 312 1 1976 106 3 32 chr21 21932864 21933148 -12974422 + AluSx SINE Alu 1 276 -36 282 29 0 0 chr21 21933148 21933183 -12974387 + (TG)n Simple_repeat Simple_repeat 2 36 0 219 183 37 0 chr21 21933183 21933265 -12974305 + (TA)n Simple_repeat Simple_repeat 2 86 0 240 300 78 0 chr21 21934587 21934677 -12972893 + MIR SINE MIR 113 209 -53 2236 70 3 73 chr21 21934875 21935205 -12972365 + AluY SINE Alu 1 307 -4 2418 84 0 16 chr21 21935450 21935760 -12971810 - AluY SINE Alu -6 305 1 2009 90 4 4 chr21 21936122 21936377 -12971193 - AluSx SINE Alu -47 265 11 225 65 0 0 chr21 21936807 21936838 -12970732 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1970 107 0 0 chr21 21936838 21937091 -12970479 - AluSx SINE Alu -59 253 1 680 165 39 24 chr21 21937357 21937484 -12970086 - AluJo SINE Alu -177 135 7 5016 231 72 32 chr21 21937503 21938451 -12969119 - L1ME2 LINE L1 -49 6509 5600 2433 63 10 0 chr21 21938451 21938754 -12968816 - AluSp SINE Alu -7 306 1 5016 231 72 32 chr21 21938754 21939407 -12968163 - L1ME2 LINE L1 -958 5600 4974 1494 103 243 0 chr21 21939407 21939650 -12967920 - AluSp SINE Alu -1 302 1 5016 231 72 32 chr21 21939650 21940140 -12967430 - L1ME2 LINE L1 -1584 4974 4505 2436 60 27 0 chr21 21940140 21940438 -12967132 - AluY SINE Alu -5 306 1 5016 231 72 32 chr21 21940438 21940867 -12966703 - L1ME2 LINE L1 -2053 4505 3897 2090 69 105 0 chr21 21940867 21941143 -12966427 - AluSc SINE Alu -4 305 1 5016 231 72 32 chr21 21941143 21941225 -12966345 - L1ME2 LINE L1 -2661 3897 3820 383 214 131 0 chr21 21941349 21941517 -12966053 - L1ME2 LINE L1 -2884 3656 3467 766 246 98 51 chr21 21941525 21941714 -12965856 - L1ME2 LINE L1 -3979 2561 2382 379 0 39 0 chr21 21941714 21941765 -12965805 + (TG)n Simple_repeat Simple_repeat 2 54 0 766 246 98 51 chr21 21941765 21942104 -12965466 - L1ME2 LINE L1 -4158 2382 2008 1180 268 42 96 chr21 21942075 21942908 -12964662 - L1ME2 LINE L1 -5205 1325 538 2098 132 0 0 chr21 21942942 21943246 -12964324 - AluSq SINE Alu -9 304 1 2349 73 3 10 chr21 21943307 21943609 -12963961 - AluY SINE Alu -11 300 1 2313 83 10 3 chr21 21943897 21944198 -12963372 - AluSc SINE Alu -6 303 1 21 0 0 0 chr21 21945097 21945118 -12962452 + AT_rich Low_complexity Low_complexity 1 21 0 1037 133 12 23 chr21 21945835 21946008 -12961562 + AluSg/x SINE Alu 133 303 -7 1821 77 68 0 chr21 21946784 21947018 -12960552 + AluSg SINE Alu 45 294 -16 25 31 0 0 chr21 21947201 21947233 -12960337 + AT_rich Low_complexity Low_complexity 1 32 0 1938 160 0 10 chr21 21947253 21947565 -12960005 - AluJb SINE Alu -3 309 1 2249 70 0 40 chr21 21947635 21947935 -12959635 - AluY SINE Alu -23 288 1 1675 191 80 19 chr21 21948378 21948702 -12958868 - MER2 DNA MER2_type 0 344 1 559 220 77 75 chr21 21948980 21949227 -12958343 - L1MC5 LINE L1 -39 7922 7677 2327 89 0 0 chr21 21949227 21949529 -12958041 + AluSx SINE Alu 1 302 -10 559 220 77 75 chr21 21949529 21949793 -12957777 - L1MC5 LINE L1 -284 7677 7411 537 170 61 27 chr21 21950673 21950820 -12956750 - L1MB7 LINE L1 0 6184 6033 2196 85 7 0 chr21 21951594 21951875 -12955695 + AluSx SINE Alu 13 295 -17 1822 106 4 4 chr21 21951969 21952215 -12955355 - AluSq SINE Alu -6 307 62 2510 51 0 0 chr21 21953401 21953693 -12953877 + AluY SINE Alu 1 292 -19 264 30 0 0 chr21 21954152 21954185 -12953385 + (TG)n Simple_repeat Simple_repeat 2 34 0 611 200 87 56 chr21 21954669 21954864 -12952706 - L2 LINE L2 0 3313 3113 806 168 7 0 chr21 21954884 21955021 -12952549 - FLAM_C SINE Alu -4 139 2 1615 165 19 65 chr21 21955056 21955191 -12952379 + AluJo SINE Alu 1 141 -171 2370 100 6 0 chr21 21955191 21955502 -12952068 - AluSq SINE Alu 0 313 1 1615 165 19 65 chr21 21955502 21955675 -12951895 + AluJo SINE Alu 141 295 -17 2163 127 0 10 chr21 21956048 21956362 -12951208 - AluSx SINE Alu -1 311 1 1877 155 0 56 chr21 21956566 21956889 -12950681 - AluJo SINE Alu -6 306 2 2217 118 10 0 chr21 21958036 21958333 -12949237 - AluSx SINE Alu -12 300 1 1920 85 12 0 chr21 21958349 21958596 -12948974 - AluSc SINE Alu -59 250 1 865 288 92 13 chr21 21958596 21958988 -12948582 + L2 LINE L2 2889 3311 -2 784 244 69 62 chr21 21959170 21959237 -12948333 - L1MC4a LINE L1 -1363 6445 6380 2013 133 19 10 chr21 21959237 21959546 -12948024 + AluJo SINE Alu 1 312 0 784 244 69 62 chr21 21959546 21959561 -12948009 - L1MC4a LINE L1 -1428 6380 6367 2650 127 62 29 chr21 21959561 21960011 -12947559 - MER4C LTR ERV1 0 465 1 784 244 69 62 chr21 21960011 21960116 -12947454 - L1MC4a LINE L1 -1441 6367 6053 392 244 65 45 chr21 21960116 21960317 -12947253 - L1MC4a LINE L1 -1551 6257 6053 2475 87 0 3 chr21 21960458 21960768 -12946802 - AluSg1 SINE Alu 0 309 1 2036 119 37 0 chr21 21960770 21961064 -12946506 - AluSx SINE Alu -7 305 1 3084 131 4 63 chr21 21961881 21962525 -12945045 - MER4B LTR ERV1 -5 774 1 25 0 0 0 chr21 21962817 21962842 -12944728 + AT_rich Low_complexity Low_complexity 1 25 0 351 367 75 4 chr21 21963205 21963431 -12944139 + L1M4 LINE L1 4720 4961 -1185 261 224 47 39 chr21 21963667 21963818 -12943752 + L1M LINE L1 5275 5426 -754 278 0 0 0 chr21 21964327 21964359 -12943211 - U2 snRNA snRNA -156 32 1 747 164 20 0 chr21 21964702 21964848 -12942722 - L1MB7 LINE L1 -9 6175 6027 2025 109 32 7 chr21 21965789 21966072 -12941498 + AluSx SINE Alu 1 290 -22 1745 200 3 0 chr21 21966772 21967072 -12940498 + AluJo SINE Alu 1 301 -11 2018 135 3 0 chr21 21967636 21967941 -12939629 - AluSx SINE Alu 0 306 1 2064 143 0 13 chr21 21967969 21968277 -12939293 + AluJb SINE Alu 1 304 -8 2158 86 0 0 chr21 21968488 21968766 -12938804 - AluSg SINE Alu -30 280 3 1751 192 3 0 chr21 21968870 21969162 -12938408 - AluJo SINE Alu -19 293 1 466 312 76 32 chr21 21969601 21969915 -12937655 - L2 LINE L2 -167 3146 2819 787 310 102 22 chr21 21969927 21970330 -12937240 - L2 LINE L2 -624 2690 2256 621 263 66 44 chr21 21970432 21970706 -12936864 - L2 LINE L2 -1230 2084 1805 727 169 0 0 chr21 21970851 21970969 -12936601 + FLAM_C SINE Alu 1 118 -25 2472 77 0 10 chr21 21971679 21971989 -12935581 + AluY SINE Alu 1 307 -4 2355 81 0 0 chr21 21972127 21972423 -12935147 - AluSg SINE Alu -14 296 1 535 319 46 65 chr21 21973170 21973252 -12934318 + HAL1b LINE L1 9 91 -1257 2123 130 0 0 chr21 21973252 21973553 -12934017 + AluSx SINE Alu 1 301 -11 535 319 46 65 chr21 21973553 21973793 -12933777 + HAL1b LINE L1 91 325 -1023 2336 227 53 57 chr21 21974551 21975454 -12932116 + L1MC5 LINE L1 6633 7532 -429 360 266 30 24 chr21 21975506 21975675 -12931895 + L1M4 LINE L1 386 555 -6300 682 237 75 36 chr21 21976270 21976627 -12930943 + L1M4 LINE L1 1290 1650 -5309 2001 143 0 3 chr21 21976627 21976927 -12930643 + AluSq SINE Alu 1 299 -14 2065 135 0 0 chr21 21976940 21977237 -12930333 + AluSx SINE Alu 1 297 -15 2555 258 23 8 chr21 21977238 21978180 -12929390 + L1M4 LINE L1 1633 2737 -4401 1547 169 75 4 chr21 21978262 21978540 -12929030 + AluJo SINE Alu 10 307 -5 1553 177 0 90 chr21 21978626 21978959 -12928611 + AluJo SINE Alu 1 303 -9 1669 201 0 7 chr21 21979050 21979358 -12928212 - AluJo SINE Alu -6 306 1 2432 97 3 0 chr21 21979429 21979738 -12927832 + AluSx SINE Alu 1 310 -2 592 211 17 97 chr21 21979756 21980045 -12927525 - L1MC5 LINE L1 -853 7108 6843 495 141 51 2 chr21 21982672 21982908 -12924662 + AluJ SINE Alu 1 296 -16 257 336 59 8 chr21 21983123 21983242 -12924328 - MIR SINE MIR -61 147 23 2435 91 0 3 chr21 21983549 21983858 -12923712 + AluSg SINE Alu 1 308 -2 2052 79 76 21 chr21 21986090 21986380 -12921190 + AluSx SINE Alu 1 306 -6 190 283 22 0 chr21 21986639 21986685 -12920885 - L3 LINE CR1 -11 1566 1520 2286 103 3 0 chr21 21986842 21987134 -12920436 - AluSq SINE Alu -20 293 1 1677 157 14 35 chr21 21987944 21988231 -12919339 - AluJo SINE Alu -11 301 21 1519 174 36 0 chr21 21988231 21988483 -12919087 - AluJb SINE Alu -50 262 1 976 260 14 0 chr21 21989129 21989348 -12918222 - MER58A DNA MER1_type -2 222 1 363 324 56 0 chr21 21989362 21989470 -12918100 - MIR SINE MIR -62 146 33 291 274 81 71 chr21 21989782 21989886 -12917684 + L1ME1 LINE L1 5650 5758 -412 2204 98 3 28 chr21 21989886 21990203 -12917367 + AluSx SINE Alu 1 309 -3 291 274 81 71 chr21 21990203 21990295 -12917275 + L1ME1 LINE L1 5758 5848 -322 185 288 153 18 chr21 21990651 21990762 -12916808 - MIR3 SINE MIR -73 135 10 1599 177 34 10 chr21 21991141 21991435 -12916135 - AluJb SINE Alu -11 301 1 2407 89 7 0 chr21 21992328 21992632 -12914938 - AluSp SINE Alu -7 306 1 1715 157 21 0 chr21 21992750 21993030 -12914540 - AluSx SINE Alu -26 286 1 216 0 0 0 chr21 21993297 21993321 -12914249 + (A)n Simple_repeat Simple_repeat 1 24 0 314 208 104 9 chr21 21993343 21993449 -12914121 - L1MC5 LINE L1 -516 7445 7330 1098 167 5 41 chr21 21993449 21993670 -12913900 - MER20 DNA MER1_type 0 219 7 21 36 0 0 chr21 21994225 21994253 -12913317 + AT_rich Low_complexity Low_complexity 1 28 0 460 205 179 15 chr21 21994542 21994737 -12912833 + L1ME1 LINE L1 5939 6165 -1 781 250 42 9 chr21 21995054 21995270 -12912300 + MER58A DNA MER1_type 2 224 0 1026 182 116 13 chr21 21995298 21995523 -12912047 + AluJo SINE Alu 1 248 -64 343 247 0 0 chr21 21995591 21995664 -12911906 + AluJ/FRAM SINE Alu 216 288 -14 2354 81 0 7 chr21 21996958 21997283 -12910287 + AluSq SINE Alu 6 313 0 2307 111 3 0 chr21 21998342 21998648 -12908922 - AluSx SINE Alu -5 307 1 742 223 16 11 chr21 21999510 21999694 -12907876 - MLT1A2 LTR MaLR 0 374 190 2154 101 3 14 chr21 21999767 22000064 -12907506 - AluSq SINE Alu -18 295 2 659 150 48 72 chr21 22000071 22000124 -12907446 - MLT1A2 LTR MaLR -211 163 110 2370 92 3 0 chr21 22000124 22000430 -12907140 - AluSp SINE Alu -6 307 1 659 150 48 72 chr21 22000430 22000543 -12907027 - MLT1A2 LTR MaLR -264 110 1 1004 179 25 0 chr21 22000621 22000817 -12906753 - L1MB5 LINE L1 -164 6010 5810 2236 100 7 7 chr21 22000832 22001133 -12906437 - AluSx SINE Alu -11 301 1 1950 152 93 5 chr21 22002485 22002892 -12904678 - L1MB7 LINE L1 -64 6120 5678 2445 81 0 10 chr21 22003065 22003375 -12904195 - AluSx SINE Alu -5 307 1 325 234 43 0 chr21 22003434 22003528 -12904042 - U6 snRNA snRNA -5 102 5 615 180 0 72 chr21 22003591 22003730 -12903840 + FLAM_C SINE Alu 3 131 -2 2340 88 0 0 chr21 22003752 22004047 -12903523 - AluSx SINE Alu -17 295 1 186 292 83 0 chr21 22005244 22005292 -12902278 - L2 LINE L2 0 3272 3221 977 271 80 29 chr21 22005351 22005822 -12901748 - L2 LINE L2 -8 3305 2765 1034 229 99 0 chr21 22006045 22006337 -12901233 - L1ME2 LINE L1 -263 5901 5581 1571 152 56 33 chr21 22006337 22006640 -12900930 + AluJo SINE Alu 1 310 -2 3286 191 54 62 chr21 22006703 22007854 -12899716 - L1ME2 LINE L1 -739 5427 4285 2181 231 69 33 chr21 22007928 22008634 -12898936 - L1ME2 LINE L1 -2058 4088 3348 2822 13 0 0 chr21 22008634 22008945 -12898625 - AluYa5 SINE Alu 0 311 1 2181 231 69 33 chr21 22008945 22009033 -12898537 - L1ME2 LINE L1 -2798 3348 3265 228 236 18 0 chr21 22009049 22009104 -12898466 + CT-rich Low_complexity Low_complexity 2 57 0 1058 249 68 11 chr21 22009106 22009475 -12898095 - L1ME2 LINE L1 -2842 3304 2915 1030 218 52 19 chr21 22009477 22009784 -12897786 - L1ME2 LINE L1 -3363 2783 2467 1901 112 8 0 chr21 22009898 22010156 -12897414 - AluSx SINE Alu -9 303 44 2172 129 7 0 chr21 22011643 22011946 -12895624 - AluSx SINE Alu -7 305 1 2505 58 0 0 chr21 22012811 22013102 -12894468 + AluY SINE Alu 1 291 -20 1622 150 66 17 chr21 22014259 22014378 -12893192 + AluJb SINE Alu 1 113 -199 396 0 0 0 chr21 22014378 22014422 -12893148 + (CA)n Simple_repeat Simple_repeat 2 45 0 1622 150 66 17 chr21 22014422 22014589 -12892981 + AluJb SINE Alu 113 301 -11 2037 144 0 7 chr21 22018516 22018815 -12888755 + AluSx SINE Alu 1 297 -15 530 160 106 0 chr21 22018908 22019002 -12888568 + FAM SINE Alu 37 140 -45 32 43 0 0 chr21 22019010 22019056 -12888514 + AT_rich Low_complexity Low_complexity 1 46 0 43 20 0 0 chr21 22020315 22020365 -12887205 + AT_rich Low_complexity Low_complexity 1 50 0 1689 82 0 0 chr21 22022269 22022489 -12885081 - AluY SINE Alu -9 302 83 213 159 48 16 chr21 22022932 22022995 -12884575 + CT-rich Low_complexity Low_complexity 2 66 0 2222 91 3 3 chr21 22025236 22025521 -12882049 + AluSc SINE Alu 1 285 -24 2381 75 0 34 chr21 22026018 22026338 -12881232 - AluSg SINE Alu -1 309 1 630 234 96 16 chr21 22026613 22026801 -12880769 + MIR SINE MIR 6 208 -54 1923 185 0 6 chr21 22028154 22028467 -12879103 - AluJo SINE Alu -1 311 1 186 336 126 0 chr21 22028769 22028912 -12878658 - L2 LINE L2 -8 3264 3104 240 193 30 37 chr21 22030297 22030432 -12877138 + (TA)n Simple_repeat Simple_repeat 1 134 0 533 165 73 0 chr21 22030881 22030990 -12876580 - AluSg/x SINE Alu -11 298 182 1416 153 0 25 chr21 22031004 22031239 -12876331 - AluJb SINE Alu -83 229 1 1308 142 24 28 chr21 22031533 22031745 -12875825 - AluJb SINE Alu -15 297 87 576 304 57 51 chr21 22033043 22033550 -12874020 + L1MC/D LINE L1 5287 5796 -2012 23 86 0 0 chr21 22033769 22033827 -12873743 + AT_rich Low_complexity Low_complexity 1 58 0 1339 122 47 0 chr21 22034830 22035043 -12872527 + MER30 DNA MER1_type 8 230 0 283 279 124 23 chr21 22035093 22035222 -12872348 - MER5B DNA MER1_type -36 142 1 522 152 136 34 chr21 22035571 22035689 -12871881 + MER58A DNA MER1_type 26 155 0 2032 45 0 4 chr21 22035729 22035975 -12871595 - AluY SINE Alu -2 309 65 2401 40 3 27 chr21 22035989 22036287 -12871283 + AluY SINE Alu 1 291 -20 1767 127 58 0 chr21 22037432 22037691 -12869879 - AluSx SINE Alu -38 274 1 2700 13 0 7 chr21 22037971 22038274 -12869296 + AluYb8 SINE Alu 1 301 -17 2376 91 0 0 chr21 22038370 22038667 -12868903 + AluSq SINE Alu 1 297 -16 643 310 102 19 chr21 22038670 22038886 -12868684 - MIR SINE MIR -21 241 8 21 0 0 0 chr21 22039627 22039648 -12867922 + AT_rich Low_complexity Low_complexity 1 21 0 2227 96 7 0 chr21 22039868 22040159 -12867411 - AluSp SINE Alu -20 293 1 2019 163 0 0 chr21 22042560 22042866 -12864704 - AluJb SINE Alu -6 306 1 1169 131 0 23 chr21 22043243 22043419 -12864151 - AluSg/x SINE Alu -7 303 132 2141 133 0 0 chr21 22043420 22043720 -12863850 - AluSx SINE Alu -12 300 1 195 188 0 0 chr21 22043797 22043845 -12863725 + T-rich Low_complexity Low_complexity 52 99 0 246 335 81 19 chr21 22045119 22045328 -12862242 - L2 LINE L2 -952 2362 2141 1898 112 23 40 chr21 22045974 22046277 -12861293 + AluSx SINE Alu 1 298 -14 508 244 35 0 chr21 22046513 22046628 -12860942 - MIR SINE MIR -111 151 33 2681 3 0 0 chr21 22049768 22050083 -12857487 + AluYb8 SINE Alu 1 315 0 282 323 47 39 chr21 22051013 22051140 -12856430 + MIR SINE MIR 104 231 -31 21 0 0 0 chr21 22051554 22051575 -12855995 + AT_rich Low_complexity Low_complexity 1 21 0 1894 141 3 3 chr21 22057185 22057469 -12850101 + AluSx SINE Alu 1 284 -28 1385 143 5 5 chr21 22057260 22057469 -12850101 + AluSg/x SINE Alu 74 310 0 253 0 0 0 chr21 22057469 22057497 -12850073 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 400 258 0 0 chr21 22058649 22058742 -12848828 + CT-rich Low_complexity Low_complexity 1 93 0 796 261 78 39 chr21 22060616 22060950 -12846620 + L1MC4 LINE L1 7555 7901 -141 255 284 17 60 chr21 22061019 22061135 -12846435 + L1MC3 LINE L1 7674 7784 -1 189 171 0 0 chr21 22063073 22063108 -12844462 + (TG)n Simple_repeat Simple_repeat 1 35 0 2499 59 0 16 chr21 22063653 22063960 -12843610 + AluY SINE Alu 1 302 -9 216 0 0 0 chr21 22063983 22064007 -12843563 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2287 89 0 0 chr21 22065716 22066025 -12841545 + AluSx SINE Alu 1 309 0 36 53 0 0 chr21 22067381 22067438 -12840132 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr21 22068466 22068487 -12839083 + AT_rich Low_complexity Low_complexity 1 21 0 316 296 40 120 chr21 22069146 22069571 -12837999 - L2 LINE L2 -1 3312 2922 668 197 8 0 chr21 22069919 22070046 -12837524 + MER20 DNA MER1_type 88 215 -4 2195 120 13 0 chr21 22070421 22070729 -12836841 - AluSx SINE Alu 0 312 1 1161 81 0 0 chr21 22070729 22070865 -12836705 - AluSq/x SINE Alu -177 136 1 226 169 215 0 chr21 22071354 22071419 -12836151 + MER116 DNA Mariner 1 79 -1 1882 66 163 0 chr21 22072005 22072262 -12835308 - AluY SINE Alu -12 299 1 315 0 0 0 chr21 22072563 22072598 -12834972 + (TG)n Simple_repeat Simple_repeat 1 35 0 206 345 0 23 chr21 22073140 22073227 -12834343 - MIR3 SINE MIR -33 175 91 622 200 32 13 chr21 22073782 22073934 -12833636 + MIR SINE MIR 8 168 -40 220 230 127 48 chr21 22075247 22075412 -12832158 - L2 LINE L2 -217 3096 2919 233 264 99 0 chr21 22075432 22075523 -12832047 + L2 LINE L2 2609 2708 -606 202 261 33 54 chr21 22075626 22075718 -12831852 + L2 LINE L2 2965 3054 -218 205 309 59 0 chr21 22076468 22076536 -12831034 + L2 LINE L2 3139 3210 -62 587 288 12 0 chr21 22077933 22078093 -12829477 - MER5B DNA MER1_type -14 164 3 1377 224 97 3 chr21 22078196 22078548 -12829022 + MLT1B LTR MaLR 1 385 -5 487 210 0 34 chr21 22078621 22078740 -12828830 + MIR SINE MIR 96 210 -52 2418 97 10 0 chr21 22079026 22079334 -12828236 + AluSx SINE Alu 1 311 -1 2344 116 0 0 chr21 22079351 22079652 -12827918 + AluSx SINE Alu 1 301 -11 1498 88 22 0 chr21 22079652 22079880 -12827690 + L1MA2 LINE L1 6072 6304 0 2613 83 0 0 chr21 22081454 22081766 -12825804 - AluSx SINE Alu 0 312 1 2067 143 0 13 chr21 22081797 22082155 -12825415 - AluJo SINE Alu 0 354 1 24 0 0 0 chr21 22082161 22082185 -12825385 + AT_rich Low_complexity Low_complexity 1 24 0 313 269 48 39 chr21 22084036 22084140 -12823430 + L2 LINE L2 3209 3313 0 415 162 0 0 chr21 22085359 22085427 -12822143 - MER5A DNA MER1_type -121 68 1 473 271 30 0 chr21 22086058 22086191 -12821379 + MIR SINE MIR 21 157 -105 532 214 14 29 chr21 22086321 22086461 -12821109 - MLT1C LTR MaLR 0 467 330 747 218 64 5 chr21 22086501 22086689 -12820881 - MLT1C LTR MaLR -267 200 2 494 210 196 14 chr21 22089365 22089508 -12818062 + MIR3 SINE MIR 17 185 -23 209 259 42 4 chr21 22089985 22090084 -12817486 + MIR SINE MIR 32 138 -70 2400 112 0 0 chr21 22090092 22090405 -12817165 + AluSq SINE Alu 1 313 0 266 315 43 0 chr21 22090707 22090799 -12816771 - MIR SINE MIR -69 139 44 2511 62 0 43 chr21 22091732 22092016 -12815554 + AluY SINE Alu 1 271 -40 207 0 0 0 chr21 22092016 22092039 -12815531 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2511 62 0 43 chr21 22092039 22092079 -12815491 + AluY SINE Alu 271 311 0 1143 139 0 12 chr21 22092083 22092256 -12815314 + AluSg/x SINE Alu 134 304 -6 522 270 29 0 chr21 22092760 22092897 -12814673 + MIR SINE MIR 14 154 -108 1897 114 103 0 chr21 22093441 22093713 -12813857 + AluSx SINE Alu 1 300 -12 906 111 0 15 chr21 22097586 22097721 -12809849 + FLAM_C SINE Alu 1 133 0 2279 87 19 0 chr21 22097736 22098057 -12809513 - pTR5 LTR ERV1 -2046 392 66 322 247 21 0 chr21 22098057 22098154 -12809416 - LTR30 LTR ERV1 -80 642 544 3560 140 48 32 chr21 22098154 22098951 -12808619 - pTR5 LTR ERV1 -413 2025 741 348 127 0 18 chr21 22099047 22099102 -12808468 - MER4C LTR ERV1 -72 393 340 2280 115 19 16 chr21 22099214 22099588 -12807982 - THE1C LTR MaLR 0 375 1 229 291 0 0 chr21 22099675 22099730 -12807840 + MIR3 SINE MIR 116 170 -38 1484 207 41 39 chr21 22099778 22100141 -12807429 - L1MC4 LINE L1 -1221 6821 6458 1011 161 0 19 chr21 22100713 22100868 -12806702 + AluSx SINE Alu 3 154 -158 301 255 53 32 chr21 22100969 22101063 -12806507 - LTR18B LTR ERVL -518 96 1 1099 146 0 0 chr21 22101063 22101221 -12806349 + AluSx SINE Alu 146 303 -7 377 251 116 58 chr21 22101234 22101441 -12806129 + L1ME4a LINE L1 5729 5899 -222 535 116 0 0 chr21 22101441 22101527 -12806043 + AluJ/FRAM SINE Alu 227 312 0 2415 96 3 0 chr21 22101529 22101832 -12805738 + AluSc SINE Alu 1 304 -5 747 199 181 5 chr21 22101864 22102085 -12805485 + MIR SINE MIR 2 261 -1 363 263 52 26 chr21 22102107 22102359 -12805211 + L1ME LINE L1 5378 5672 -449 1926 138 0 0 chr21 22102587 22102863 -12804707 - AluSx SINE Alu 0 312 37 513 252 143 7 chr21 22103060 22103207 -12804363 - MER5B DNA MER1_type -1 177 11 405 298 60 7 chr21 22103504 22103655 -12803915 - MIR SINE MIR -2 260 102 2008 127 0 4 chr21 22103656 22103931 -12803639 + AluSx SINE Alu 1 274 -38 2455 63 23 7 chr21 22103946 22104249 -12803321 + AluSq SINE Alu 1 308 -5 2470 94 0 0 chr21 22104707 22105014 -12802556 - AluSc SINE Alu -2 307 1 266 196 27 125 chr21 22105703 22105751 -12801819 - L1MEd LINE L1 -5122 997 965 2328 98 3 0 chr21 22105751 22106047 -12801523 - AluSx SINE Alu -15 297 1 266 196 27 125 chr21 22106047 22106110 -12801460 - L1MEd LINE L1 -5154 965 897 1020 111 18 0 chr21 22106123 22106146 -12801424 + (TTTC)n Simple_repeat Simple_repeat 1 197 0 1020 111 18 0 chr21 22106146 22106317 -12801253 + (TTTC)n Simple_repeat Simple_repeat 3 176 0 979 192 6 17 chr21 22106421 22106598 -12800972 - AluJb SINE Alu -3 309 135 1209 179 129 15 chr21 22106686 22106949 -12800621 + AluJo SINE Alu 1 293 -9 2074 116 3 0 chr21 22107127 22107420 -12800150 - AluSx SINE Alu -18 294 1 383 308 35 35 chr21 22107838 22107893 -12799677 - L1MEd LINE L1 -5948 171 117 324 0 0 0 chr21 22107893 22107929 -12799641 + (TG)n Simple_repeat Simple_repeat 1 36 0 383 308 35 35 chr21 22107929 22108042 -12799528 - L1MEd LINE L1 -6001 118 3 1700 169 17 7 chr21 22108056 22108076 -12799494 - AluJb SINE Alu -7 305 287 354 23 0 0 chr21 22108076 22108119 -12799451 + (TG)n Simple_repeat Simple_repeat 2 44 0 1700 169 17 7 chr21 22108119 22108400 -12799170 - AluJb SINE Alu -25 287 1 211 231 0 0 chr21 22108518 22108557 -12799013 + (CATA)n Simple_repeat Simple_repeat 3 41 0 380 333 54 18 chr21 22108840 22109008 -12798562 - L2 LINE L2 -2 3270 3097 2010 127 0 10 chr21 22109133 22109432 -12798138 + AluJo SINE Alu 1 296 -16 2043 122 0 0 chr21 22109753 22110047 -12797523 - AluSx SINE Alu -18 294 1 2426 66 0 0 chr21 22111193 22111496 -12796074 + AluY SINE Alu 1 303 -8 1333 199 131 0 chr21 22111766 22112033 -12795537 + AluJo SINE Alu 1 302 0 1826 147 0 32 chr21 22113962 22114276 -12793294 - AluJo SINE Alu -7 305 2 207 0 0 0 chr21 22114277 22114300 -12793270 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1965 128 0 16 chr21 22115992 22116296 -12791274 + AluSx SINE Alu 1 299 -13 1954 137 0 3 chr21 22117107 22117400 -12790170 + AluJb SINE Alu 5 296 -16 265 213 107 13 chr21 22117566 22117641 -12789929 - MIR SINE MIR -180 82 1 1867 143 23 7 chr21 22117668 22117975 -12789595 - AluJb SINE Alu 0 312 1 189 0 0 0 chr21 22122007 22122028 -12785542 + (ATTTG)n Simple_repeat Simple_repeat 2 22 0 2188 101 0 0 chr21 22123375 22123673 -12783897 + AluSx SINE Alu 1 298 -14 400 58 0 0 chr21 22124190 22124242 -12783328 + MADE1 DNA Mariner 1 52 -28 771 213 3 0 chr21 22125465 22125795 -12781775 + (TG)n Simple_repeat Simple_repeat 1 331 0 773 224 23 0 chr21 22125895 22126069 -12781501 - MER45A DNA AcHobo 0 178 1 216 0 0 0 chr21 22129834 22129858 -12777712 + (CAAAAA)n Simple_repeat Simple_repeat 1 24 0 1825 163 14 0 chr21 22130640 22130929 -12776641 + AluJo SINE Alu 1 293 -19 235 133 0 22 chr21 22131304 22131349 -12776221 - Alu SINE Alu -7 293 250 1431 182 20 17 chr21 22131464 22131760 -12775810 + AluJb SINE Alu 1 297 -15 234 266 62 26 chr21 22132241 22132354 -12775216 - MLT1J2 LTR MaLR -282 168 52 24 32 0 0 chr21 22133860 22133891 -12773679 + AT_rich Low_complexity Low_complexity 1 31 0 2056 124 0 0 chr21 22134818 22135108 -12772462 - AluSx SINE Alu -22 290 1 584 300 25 42 chr21 22135327 22135564 -12772006 - MIR SINE MIR -17 245 13 2134 109 6 3 chr21 22135698 22136009 -12771561 + AluSx SINE Alu 1 312 0 503 254 114 35 chr21 22136445 22136646 -12770924 + MIR SINE MIR 2 218 -44 1647 160 10 14 chr21 22136773 22137067 -12770503 + AluJb SINE Alu 1 293 -19 1358 165 63 4 chr21 22137639 22137893 -12769677 + AluJo SINE Alu 14 282 -30 1424 157 15 71 chr21 22137937 22138261 -12769309 + AluJb SINE Alu 1 306 -6 1892 142 0 3 chr21 22138499 22138788 -12768782 + AluJb SINE Alu 7 294 -18 452 189 11 32 chr21 22139006 22139101 -12768469 - MER5A DNA MER1_type -84 105 13 1889 119 52 0 chr21 22139347 22139633 -12767937 - AluSx SINE Alu -11 301 1 1927 111 20 7 chr21 22141730 22142028 -12765542 - AluSg SINE Alu -6 304 3 26 0 0 0 chr21 22142538 22142564 -12765006 + AT_rich Low_complexity Low_complexity 1 26 0 474 227 45 0 chr21 22142633 22142743 -12764827 + MIR3 SINE MIR 76 190 -18 379 287 108 6 chr21 22143086 22143248 -12764322 + MIR3 SINE MIR 10 188 -60 2165 106 0 0 chr21 22143852 22144145 -12763425 - AluSg SINE Alu -17 293 1 244 287 43 43 chr21 22145303 22145397 -12762173 + MIR SINE MIR 50 143 -65 2858 132 24 2 chr21 22146340 22146803 -12760767 - MER31A LTR ERV1 0 485 13 1956 125 24 0 chr21 22147267 22147554 -12760016 - AluSx SINE Alu -18 294 1 598 217 53 7 chr21 22147710 22147862 -12759708 + MIR SINE MIR 89 247 -15 1508 183 7 23 chr21 22147869 22148170 -12759400 - AluJb SINE Alu -14 298 3 271 282 55 43 chr21 22148306 22148469 -12759101 - L1ME LINE L1 -252 5869 5705 233 49 0 0 chr21 22148505 22148546 -12759024 - AluSx SINE Alu -1 302 262 1500 106 0 10 chr21 22148546 22148753 -12758817 - AluSx SINE Alu -107 205 1 1656 136 18 86 chr21 22148753 22148863 -12758707 - 7SLRNA srpRNA srpRNA -4 316 200 2022 123 0 0 chr21 22148863 22149179 -12758391 - AluSx SINE Alu 0 316 1 1656 136 18 86 chr21 22149179 22149405 -12758165 - 7SLRNA srpRNA srpRNA -120 200 2 364 345 36 6 chr21 22149411 22149576 -12757994 - L1ME LINE L1 -440 5681 5512 377 254 95 8 chr21 22149637 22149763 -12757807 - L2 LINE L2 -3 3310 3174 1818 163 10 0 chr21 22149902 22150208 -12757362 - AluJb SINE Alu -2 310 2 566 160 0 11 chr21 22150448 22150542 -12757028 - AluY SINE Alu -223 95 3 1602 144 46 26 chr21 22151210 22151516 -12756054 + AluSx SINE Alu 1 312 0 2073 101 0 0 chr21 22151848 22152126 -12755444 + AluSx SINE Alu 16 293 -19 1578 175 0 14 chr21 22152141 22152438 -12755132 - AluJb SINE Alu -19 293 1 1550 146 0 45 chr21 22152658 22152945 -12754625 + AluJb SINE Alu 21 294 -18 880 139 6 13 chr21 22153388 22153546 -12754024 - AluJb SINE Alu -19 293 137 556 242 38 0 chr21 22155000 22155132 -12752438 + MIR SINE MIR 27 163 -99 2181 103 0 20 chr21 22155305 22155605 -12751965 - AluSx SINE Alu -18 294 1 37730 31 5 1 chr21 22155641 22161675 -12745895 - L1PA2 LINE L1 0 6155 6 201 74 0 0 chr21 22162020 22162047 -12745523 + (A)n Simple_repeat Simple_repeat 1 27 0 1745 186 24 0 chr21 22162947 22163237 -12744333 - AluJb SINE Alu -15 297 1 2182 109 3 0 chr21 22163862 22164168 -12743402 - AluSx SINE Alu 0 307 1 21 0 0 0 chr21 22164168 22164189 -12743381 + AT_rich Low_complexity Low_complexity 1 21 0 2202 124 3 3 chr21 22164486 22164793 -12742777 - AluSx SINE Alu -5 307 1 1372 150 12 20 chr21 22165103 22165356 -12742214 - L1MA9 LINE L1 -5 6307 6057 2105 111 11 0 chr21 22165432 22165743 -12741827 - AluSx SINE Alu 0 314 1 1969 157 3 13 chr21 22166087 22166393 -12741177 - AluJb SINE Alu -9 303 1 236 175 146 48 chr21 22166438 22166541 -12741029 + MER5A DNA MER1_type 51 163 -26 220 202 96 29 chr21 22166464 22166568 -12741002 - MER5A DNA MER1_type -74 115 5 564 232 20 20 chr21 22166887 22167038 -12740532 - MIR SINE MIR -40 222 72 1842 102 3 135 chr21 22167620 22167667 -12739903 + MER57B LTR ERV1 1 53 -381 2218 118 0 29 chr21 22167667 22167980 -12739590 - AluSx SINE Alu -8 304 1 1842 102 3 135 chr21 22167980 22168316 -12739254 + MER57B LTR ERV1 53 333 -101 313 0 0 0 chr21 22168316 22168350 -12739220 - U2 snRNA snRNA -154 34 1 943 53 0 0 chr21 22168350 22168464 -12739106 + MER57B LTR ERV1 319 432 -2 1055 159 31 20 chr21 22168519 22168714 -12738856 - L1MB7 LINE L1 -12 6172 5976 183 176 0 0 chr21 22168783 22168817 -12738753 + L2 LINE L2 3227 3260 -12 2346 99 0 0 chr21 22168890 22169183 -12738387 + AluSx SINE Alu 3 295 -17 2084 140 45 62 chr21 22169889 22170028 -12737542 + L1MB7 LINE L1 5725 5865 -319 2009 110 0 60 chr21 22170028 22170345 -12737225 + AluSq SINE Alu 1 298 -15 2084 140 45 62 chr21 22170345 22170654 -12736916 + L1MB7 LINE L1 5865 6165 -19 280 300 27 9 chr21 22170861 22170971 -12736599 - MIR3 SINE MIR 0 208 97 182 325 0 13 chr21 22171102 22171179 -12736391 + L2 LINE L2 2692 2767 -547 2231 92 0 48 chr21 22171514 22171829 -12735741 + AluSc SINE Alu 1 300 -9 25 31 0 0 chr21 22172240 22172272 -12735298 + AT_rich Low_complexity Low_complexity 1 32 0 387 220 80 0 chr21 22172604 22172704 -12734866 + L2 LINE L2 3206 3313 0 2028 135 36 0 chr21 22173090 22173371 -12734199 - AluSx SINE Alu -21 291 1 493 292 35 6 chr21 22173568 22173739 -12733831 - MIR SINE MIR -1 261 86 6316 128 31 19 chr21 22174035 22174072 -12733498 + L1MC1 LINE L1 5277 5312 -1021 1866 148 0 60 chr21 22174072 22174404 -12733166 + AluJb SINE Alu 1 312 0 6316 128 31 19 chr21 22174404 22175405 -12732165 + L1MC1 LINE L1 5312 6327 -6 2350 112 0 3 chr21 22175492 22175803 -12731767 + AluSx SINE Alu 1 310 -2 652 143 118 8 chr21 22175877 22175996 -12731574 + FLAM_C SINE Alu 2 133 0 607 249 52 52 chr21 22176001 22176230 -12731340 + L1MC5 LINE L1 7696 7924 -37 2136 107 31 0 chr21 22176540 22176958 -12730612 - AluSx SINE Alu 0 427 1 1652 141 7 45 chr21 22179795 22180085 -12727485 - AluJo SINE Alu -19 293 15 283 292 53 0 chr21 22180735 22180848 -12726722 + MIR SINE MIR 27 145 -63 184 143 36 0 chr21 22180853 22180909 -12726661 + (TA)n Simple_repeat Simple_repeat 1 58 0 269 172 30 20 chr21 22180940 22181039 -12726531 + (TA)n Simple_repeat Simple_repeat 1 100 0 310 216 14 0 chr21 22181042 22181116 -12726454 + MIR SINE MIR 159 233 -29 919 206 99 92 chr21 22182195 22182414 -12725156 - L1M3 LINE L1 -408 5763 5547 2089 145 0 0 chr21 22182414 22182718 -12724852 + AluJo SINE Alu 1 304 -8 919 206 99 92 chr21 22182718 22182824 -12724746 - L1M3 LINE L1 -624 5547 5443 2326 110 0 13 chr21 22182824 22183134 -12724436 - AluSc SINE Alu -3 306 1 919 206 99 92 chr21 22183134 22183303 -12724267 - L1M3 LINE L1 -728 5443 5265 1895 245 28 55 chr21 22183311 22183380 -12724190 - L1M3 LINE L1 -886 5260 5191 2316 93 3 3 chr21 22183380 22183682 -12723888 - AluSx SINE Alu -10 302 1 1895 245 28 55 chr21 22183682 22184387 -12723183 - L1M3 LINE L1 -955 5191 4507 1289 188 43 108 chr21 22184443 22184858 -12722712 - MLT1B LTR MaLR -2 388 1 2355 238 45 50 chr21 22184869 22185530 -12722040 + L1MEd LINE L1 900 1558 -4972 2162 125 3 10 chr21 22185530 22185835 -12721735 + AluSx SINE Alu 1 303 -9 2355 238 45 50 chr21 22185835 22185945 -12721625 + L1MEd LINE L1 1558 1667 -4863 227 279 67 18 chr21 22185996 22186141 -12721429 + L1MEd LINE L1 2428 2583 -3957 700 197 15 8 chr21 22186141 22186273 -12721297 + FLAM_A SINE Alu 1 133 0 227 279 67 18 chr21 22186273 22186292 -12721278 + L1MEd LINE L1 2583 2600 -3940 384 22 0 0 chr21 22186292 22186337 -12721233 + (CA)n Simple_repeat Simple_repeat 2 46 0 688 296 37 21 chr21 22186391 22186719 -12720851 + L1MEd LINE L1 2682 3014 -3526 2249 105 0 0 chr21 22186775 22187060 -12720510 + AluSx SINE Alu 1 285 -27 3274 137 29 4 chr21 22187684 22188194 -12719376 - MER1A DNA MER1_type 0 529 7 4442 248 53 29 chr21 22188205 22190023 -12717547 + L1ME LINE L1 360 2189 -3891 23 0 0 0 chr21 22190134 22190157 -12717413 + AT_rich Low_complexity Low_complexity 1 23 0 724 171 7 0 chr21 22190197 22190337 -12717233 + L1MA5 LINE L1 6003 6143 -157 814 152 0 0 chr21 22190337 22190455 -12717115 - AluSg/x SINE Alu -17 293 176 1947 114 9 57 chr21 22190480 22190795 -12716775 - AluSc SINE Alu -9 300 1 1169 107 0 0 chr21 22190795 22190963 -12716607 + L1MA5 LINE L1 6133 6300 0 317 322 78 26 chr21 22191059 22191289 -12716281 + MIR SINE MIR 21 262 0 255 200 86 0 chr21 22191366 22191436 -12716134 - MER112 DNA MER1_type -17 243 168 2628 65 0 0 chr21 22191442 22191751 -12715819 + AluY SINE Alu 1 309 -2 183 218 0 0 chr21 22191770 22191825 -12715745 + (AATAG)n Simple_repeat Simple_repeat 1 55 0 188 313 78 9 chr21 22192069 22192184 -12715386 - L2 LINE L2 -559 2755 2633 463 238 98 109 chr21 22192537 22192987 -12714583 + MER65A LTR ERV1 1 445 0 920 258 41 27 chr21 22193007 22193375 -12714195 + L2 LINE L2 2222 2594 -720 628 267 53 38 chr21 22193422 22193859 -12713711 + L2 LINE L2 2850 3261 -52 223 156 0 22 chr21 22193984 22194029 -12713541 + L2 LINE L2 3267 3310 -3 225 65 0 0 chr21 22194104 22194135 -12713435 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 330 229 128 0 chr21 22194247 22194356 -12713214 - MIR SINE MIR -83 179 57 1752 148 60 7 chr21 22195182 22195465 -12712105 - AluJo SINE Alu -14 298 1 278 123 37 37 chr21 22195481 22195562 -12712008 + (TAAA)n Simple_repeat Simple_repeat 2 82 0 270 223 29 40 chr21 22195483 22195737 -12711833 + (TATAA)n Simple_repeat Simple_repeat 1 251 0 308 246 6 55 chr21 22196015 22196280 -12711290 + (TTATA)n Simple_repeat Simple_repeat 1 251 0 520 298 29 8 chr21 22197642 22197842 -12709728 + MIR SINE MIR 7 210 -52 2084 106 47 10 chr21 22197849 22198150 -12709420 + AluSx SINE Alu 1 312 0 592 258 148 51 chr21 22198258 22198678 -12708892 - MLT1J LTR MaLR -21 429 1 183 218 18 55 chr21 22199342 22199397 -12708173 + L2 LINE L2 3212 3264 -8 2240 125 0 3 chr21 22201011 22201323 -12706247 - AluSx SINE Alu -1 311 1 252 0 0 0 chr21 22201576 22201604 -12705966 + (CA)n Simple_repeat Simple_repeat 2 29 0 318 329 94 1 chr21 22201665 22201787 -12705783 + MIR3 SINE MIR 4 134 -92 1981 191 62 29 chr21 22201787 22202274 -12705296 - MLT1D LTR MaLR -2 503 1 2339 97 3 0 chr21 22202280 22202579 -12704991 - AluSx SINE Alu -12 300 1 961 168 19 0 chr21 22202886 22203041 -12704529 + FRAM SINE Alu 1 157 -19 561 68 0 0 chr21 22204110 22204184 -12703386 + (CA)n Simple_repeat Simple_repeat 1 74 0 525 221 6 12 chr21 22204702 22204865 -12702705 + CT-rich Low_complexity Low_complexity 3 164 0 2238 104 0 0 chr21 22204888 22205196 -12702374 - AluSq SINE Alu -5 308 1 543 328 76 29 chr21 22205198 22205645 -12701925 - L1MEd LINE L1 -4971 1148 706 198 0 0 0 chr21 22206403 22206425 -12701145 + (CTCA)n Simple_repeat Simple_repeat 1 22 0 394 227 78 52 chr21 22207155 22207309 -12700261 - MIR3 SINE MIR -15 193 36 238 143 0 0 chr21 22207654 22207689 -12699881 - L2 LINE L2 -18 3295 3261 1419 178 13 33 chr21 22207768 22208071 -12699499 + AluJo SINE Alu 1 297 -15 248 279 12 0 chr21 22208262 22208348 -12699222 - L2 LINE L2 -377 2895 2809 2718 193 35 2 chr21 22208428 22208968 -12698602 - L1MB2 LINE L1 -18 6153 5596 640 96 0 21 chr21 22208969 22209063 -12698507 - AluSg/x SINE Alu -12 297 206 1444 110 5 0 chr21 22209213 22209413 -12698157 - AluSq SINE Alu -112 201 1 401 271 106 48 chr21 22209469 22209657 -12697913 - L2 LINE L2 -923 2391 2193 1739 101 74 0 chr21 22209683 22209940 -12697630 - AluSq SINE Alu -37 276 1 299 146 0 21 chr21 22209941 22209989 -12697581 + MER58B DNA MER1_type 40 86 -255 2205 69 41 0 chr21 22209989 22210279 -12697291 - AluY SINE Alu -9 302 1 1334 219 49 3 chr21 22210280 22210568 -12697002 + MER58B DNA MER1_type 40 340 -1 1397 250 53 35 chr21 22210861 22211313 -12696257 - MLT1C LTR MaLR -2 465 6 2878 151 69 59 chr21 22212133 22212314 -12695256 - L1MB5 LINE L1 -33 6141 5963 201 39 0 0 chr21 22212314 22212340 -12695230 + (TTCTC)n Simple_repeat Simple_repeat 4 29 0 1840 111 0 57 chr21 22212345 22212643 -12694927 - AluSx SINE Alu -31 281 1 2878 151 69 59 chr21 22212643 22213079 -12694491 - L1MB5 LINE L1 -214 5960 5512 193 54 0 54 chr21 22214725 22214762 -12692808 + (TTTTC)n Simple_repeat Simple_repeat 2 36 0 644 62 45 44 chr21 22215142 22215487 -12692083 + (CACAC)n Simple_repeat Simple_repeat 1 345 0 437 80 80 14 chr21 22215508 22215646 -12691924 + (CACAC)n Simple_repeat Simple_repeat 5 151 0 2142 169 31 22 chr21 22215824 22216281 -12691289 - MLT1C LTR MaLR -6 461 1 1947 148 0 0 chr21 22216961 22217252 -12690318 - AluJb SINE Alu -21 291 1 200 327 30 20 chr21 22217810 22217911 -12689659 - MIR3 SINE MIR -104 104 3 2089 103 63 3 chr21 22218264 22218583 -12688987 - MSTA LTR MaLR -2 426 89 415 258 33 60 chr21 22218603 22218754 -12688816 - LTR67 LTR ERVL -298 259 113 303 250 12 38 chr21 22218812 22218892 -12688678 - LTR67 LTR ERVL -476 81 4 374 317 56 12 chr21 22218936 22219097 -12688473 + MIR SINE MIR 8 175 -87 2056 92 48 3 chr21 22219318 22219611 -12687959 - AluSq SINE Alu -7 306 1 234 0 0 0 chr21 22220371 22220397 -12687173 + (T)n Simple_repeat Simple_repeat 1 26 0 2044 125 0 38 chr21 22220520 22220840 -12686730 + AluSx SINE Alu 1 308 -4 602 159 9 44 chr21 22220979 22221092 -12686478 - L2 LINE L2 0 3313 3205 213 301 12 60 chr21 22221197 22221280 -12686290 - L2 LINE L2 0 3313 3235 1984 108 97 62 chr21 22222547 22222899 -12684671 - THE1B LTR MaLR 0 364 1 1740 154 10 13 chr21 22222921 22223219 -12684351 - AluJb SINE Alu -15 297 1 611 271 7 0 chr21 22224580 22224724 -12682846 - MLT1J LTR MaLR -296 215 71 317 261 34 8 chr21 22224896 22225015 -12682555 - L1MEd LINE L1 -3597 2829 2708 600 274 53 33 chr21 22225019 22225358 -12682212 - L1MEd LINE L1 -3632 2794 2469 2015 104 0 20 chr21 22225360 22225688 -12681882 - AluSx SINE Alu 0 312 1 306 309 33 59 chr21 22225722 22225874 -12681696 - L1MEd LINE L1 -4573 1853 1706 1583 163 14 14 chr21 22225913 22226201 -12681369 - AluJb SINE Alu -24 288 1 701 321 51 52 chr21 22226369 22226859 -12680711 - L1MEd LINE L1 -1088 1699 1007 1455 214 53 68 chr21 22227475 22227946 -12679624 - MLT2C2 LTR ERVL 0 464 1 375 186 43 0 chr21 22227954 22228024 -12679546 + MER5A DNA MER1_type 10 82 -107 294 190 35 0 chr21 22228188 22228246 -12679324 + MER5B DNA MER1_type 61 120 -58 258 228 25 63 chr21 22228319 22228398 -12679172 + MER5A DNA MER1_type 7 82 -107 665 258 91 107 chr21 22229225 22229355 -12678215 + L2 LINE L2 2811 2942 -371 2111 116 3 0 chr21 22229355 22229657 -12677913 - AluSx SINE Alu -8 304 2 665 258 91 107 chr21 22229657 22230033 -12677537 + L2 LINE L2 2942 3309 -4 484 263 23 15 chr21 22231143 22231276 -12676294 - L2 LINE L2 -5 3308 3175 1520 180 10 20 chr21 22231413 22231713 -12675857 - AluJo SINE Alu -15 297 1 904 112 15 0 chr21 22231720 22231854 -12675716 - AluJo SINE Alu -176 136 1 766 229 138 18 chr21 22232099 22232279 -12675291 + MER33 DNA MER1_type 15 241 -2344 1572 156 0 39 chr21 22232279 22232562 -12675008 - AluJb SINE Alu -18 294 23 766 229 138 18 chr21 22232562 22232656 -12674914 + MER33 DNA MER1_type 241 322 -2 182 279 108 63 chr21 22233186 22233297 -12674273 - MIR SINE MIR -111 151 36 329 109 0 0 chr21 22233490 22233536 -12674034 - MLT2B2 LTR ERVL 0 515 470 768 95 56 14 chr21 22233562 22233846 -12673724 + (TCTA)n Simple_repeat Simple_repeat 1 296 0 2636 147 23 21 chr21 22233866 22234302 -12673268 - MLT2B2 LTR ERVL -75 440 4 1636 68 40 9 chr21 22235508 22235730 -12671840 + AluSq SINE Alu 1 229 -84 812 151 54 36 chr21 22235731 22235897 -12671673 + AluSg/x SINE Alu 142 310 0 2158 115 0 0 chr21 22236265 22236569 -12671001 - AluSx SINE Alu -8 304 1 264 30 0 0 chr21 22237876 22237909 -12669661 + (TG)n Simple_repeat Simple_repeat 2 34 0 2173 101 7 3 chr21 22237948 22238256 -12669314 + AluSx SINE Alu 1 309 -3 1596 172 7 4 chr21 22238381 22238654 -12668916 - AluJo SINE Alu -30 282 9 5171 102 0 10 chr21 22238676 22239374 -12668196 - LTR8 LTR ERV1 0 691 1 964 189 0 5 chr21 22239934 22240125 -12667445 + AluJo SINE Alu 122 311 -1 36 0 0 0 chr21 22240615 22240651 -12666919 + AT_rich Low_complexity Low_complexity 1 36 0 4431 169 54 81 chr21 22240651 22241318 -12666252 - L1MC3 LINE L1 -6 7779 7152 2114 113 0 0 chr21 22241318 22241609 -12665961 - AluSx SINE Alu -21 291 1 4431 169 54 81 chr21 22241609 22242051 -12665519 - L1MC3 LINE L1 -633 7152 6700 1676 176 0 7 chr21 22242067 22242356 -12665214 - AluJb SINE Alu -19 293 7 524 291 47 38 chr21 22242645 22242858 -12664712 + MIR SINE MIR 41 255 -7 1041 130 0 111 chr21 22243536 22243743 -12663827 + MER5A DNA MER1_type 1 184 -5 2265 108 41 36 chr21 22243743 22244105 -12663465 - THE1B LTR MaLR 0 364 1 1818 121 0 0 chr21 22244251 22244507 -12663063 + AluSx SINE Alu 42 297 -15 4900 151 36 7 chr21 22244509 22245024 -12662546 + L1MC2 LINE L1 5473 6022 -322 2769 132 12 25 chr21 22245024 22245259 -12662311 - MSTA LTR MaLR 0 428 200 2215 85 0 0 chr21 22245259 22245552 -12662018 - AluY SINE Alu -18 293 1 2769 132 12 25 chr21 22245552 22245747 -12661823 - MSTA LTR MaLR -228 200 4 4900 151 36 7 chr21 22245747 22246054 -12661516 + L1MC2 LINE L1 6022 6319 -25 2233 96 3 0 chr21 22246445 22246747 -12660823 - AluSx SINE Alu -9 303 1 2093 111 7 0 chr21 22246747 22247044 -12660526 - AluSq SINE Alu -14 299 1 718 248 54 61 chr21 22247519 22247797 -12659773 + MLT1J LTR MaLR 232 507 -4 519 258 78 18 chr21 22247872 22248039 -12659531 + MIR SINE MIR 79 255 -7 1963 147 0 3 chr21 22248120 22248426 -12659144 + AluSx SINE Alu 1 305 -7 679 276 92 25 chr21 22248857 22249410 -12658160 + L2 LINE L2 1365 2024 -1290 467 274 53 0 chr21 22249453 22249566 -12658004 + L2 LINE L2 3195 3313 0 1131 214 18 0 chr21 22249572 22249792 -12657778 + MER58A DNA MER1_type 1 224 0 474 311 34 0 chr21 22250052 22250200 -12657370 - MIR SINE MIR -52 210 58 395 290 40 16 chr21 22250317 22250441 -12657129 - MIR SINE MIR -134 128 2 854 214 51 15 chr21 22251134 22251330 -12656240 - MLT1B LTR MaLR 0 390 188 771 181 54 16 chr21 22251365 22251547 -12656023 - MLT1B LTR MaLR -186 188 7 668 276 40 25 chr21 22251820 22252019 -12655551 - MIR SINE MIR -47 215 14 216 283 50 0 chr21 22254193 22254253 -12653317 - L2 LINE L2 -56 3216 3154 180 276 40 53 chr21 22254336 22254412 -12653158 - L2 LINE L2 -191 3081 3007 628 242 19 37 chr21 22254465 22254680 -12652890 + L2 LINE L2 3103 3313 0 226 335 132 20 chr21 22254717 22255242 -12652328 - L2 LINE L2 -339 2975 2345 262 344 36 27 chr21 22255491 22255512 -12652058 - L2 LINE L2 -1357 1957 1938 1703 179 103 30 chr21 22255512 22255947 -12651623 + MLT1C LTR MaLR 1 467 0 262 344 36 27 chr21 22255947 22256149 -12651421 - L2 LINE L2 -1376 1938 1732 586 0 27 0 chr21 22256184 22256258 -12651312 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 2146 109 3 17 chr21 22256263 22256565 -12651005 - AluSx SINE Alu -14 298 1 1128 49 39 4 chr21 22256579 22256846 -12650724 + (TCTA)n Simple_repeat Simple_repeat 1 276 0 3714 142 24 61 chr21 22256853 22257125 -12650445 - L1MA9 LINE L1 -110 6202 5921 2118 86 25 0 chr21 22257125 22257405 -12650165 - AluSx SINE Alu -11 301 15 3714 142 24 61 chr21 22257405 22257849 -12649721 - L1MA9 LINE L1 -391 5921 5513 3509 116 24 0 chr21 22257856 22258347 -12649223 + MER1A DNA MER1_type 27 529 0 459 122 122 0 chr21 22258347 22258437 -12649133 - L1MA9 LINE L1 -854 5480 5380 2396 97 3 0 chr21 22258567 22258876 -12648694 - AluSx SINE Alu -2 310 1 3313 147 25 58 chr21 22258876 22259482 -12648088 - MER7C DNA MER2_type -16 586 1 1243 65 0 0 chr21 22259498 22259651 -12647919 + AluSg/x SINE Alu 157 309 -1 393 258 212 0 chr21 22260078 22260210 -12647360 - MLT1J2 LTR MaLR -23 427 268 497 225 61 13 chr21 22260254 22260404 -12647166 - MLT1J2 LTR MaLR -304 146 1 604 274 68 44 chr21 22260404 22260655 -12646915 + MLT1L LTR MaLR 347 603 -12 208 319 44 74 chr21 22261027 22261149 -12646421 + L2 LINE L2 3137 3257 -15 2144 123 0 0 chr21 22261149 22261453 -12646117 + AluSx SINE Alu 2 305 0 208 319 44 74 chr21 22261453 22261464 -12646106 + L2 LINE L2 3257 3267 -5 376 257 40 23 chr21 22262199 22262374 -12645196 + MIR3 SINE MIR 21 198 -10 457 333 12 41 chr21 22262435 22262681 -12644889 + L1ME4a LINE L1 5657 5895 -226 216 275 0 29 chr21 22263035 22263104 -12644466 + CT-rich Low_complexity Low_complexity 1 67 0 1695 179 16 36 chr21 22263149 22263513 -12644057 - L1ME2 LINE L1 -9 6155 5799 1261 190 54 40 chr21 22263517 22263899 -12643671 + MLT1D LTR MaLR 10 449 -56 1944 120 45 14 chr21 22263899 22264191 -12643379 - AluSq SINE Alu -12 301 1 1261 190 54 40 chr21 22264191 22264249 -12643321 + MLT1D LTR MaLR 449 505 0 1136 177 58 8 chr21 22264257 22264500 -12643070 - L1ME2 LINE L1 -384 5780 5526 261 167 0 0 chr21 22265069 22265123 -12642447 + T-rich Low_complexity Low_complexity 1 54 0 706 282 104 26 chr21 22268964 22269233 -12638337 + LTR16A LTR ERVL 146 435 -15 243 125 0 0 chr21 22269520 22269552 -12638018 - MLT1E3 LTR MaLR -592 32 1 828 135 16 8 chr21 22269604 22269730 -12637840 - FLAM_C SINE Alu -16 127 1 786 246 58 22 chr21 22269732 22269956 -12637614 - MER33 DNA MER1_type -91 233 2 5154 188 55 51 chr21 22270002 22271215 -12636355 + L1MB7 LINE L1 9 1226 -5316 1046 184 56 9 chr21 22271257 22271490 -12636080 + L1MB7 LINE L1 4791 5034 -1610 183 42 0 0 chr21 22271540 22271564 -12636006 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3642 175 35 12 chr21 22271564 22272188 -12635382 + L1MB7 LINE L1 5121 5729 -953 3504 136 76 7 chr21 22272188 22272790 -12634780 + LTR48B LTR ERV1 1 644 0 3642 175 35 12 chr21 22272790 22273433 -12634137 + L1MB7 LINE L1 5729 6421 -261 507 148 102 0 chr21 22273433 22273521 -12634049 - Tigger7 DNA MER2_type 0 2487 2391 1510 180 47 4 chr21 22273520 22273776 -12633794 - Tigger7 DNA MER2_type -2220 267 1 1105 166 64 25 chr21 22273776 22274011 -12633559 + L1MB7 LINE L1 6420 6663 -19 23 33 0 0 chr21 22274024 22274054 -12633516 + AT_rich Low_complexity Low_complexity 1 30 0 1728 262 102 2 chr21 22274458 22275034 -12632536 + L2 LINE L2 1993 2626 -688 628 114 0 0 chr21 22275035 22275123 -12632447 - AluSp/q SINE Alu -12 301 214 232 318 26 14 chr21 22275123 22275340 -12632230 + L2 LINE L2 2608 2897 -417 2203 116 7 0 chr21 22275341 22275635 -12631935 - AluSx SINE Alu -16 296 1 496 230 7 34 chr21 22275650 22275798 -12631772 + MIR SINE MIR 119 262 0 181 237 0 0 chr21 22275938 22275976 -12631594 + MIR SINE MIR 220 257 -5 389 130 52 13 chr21 22275976 22276053 -12631517 - MADE1 DNA Mariner 0 80 1 260 241 126 0 chr21 22276277 22276364 -12631206 - HAL1 LINE L1 -856 1651 1554 294 284 24 82 chr21 22276390 22276598 -12630972 - HAL1 LINE L1 -1045 1462 1267 2383 101 0 0 chr21 22277256 22277553 -12630017 - AluSx SINE Alu -15 297 1 2226 89 7 23 chr21 22277564 22277866 -12629704 - AluY SINE Alu -14 297 1 528 274 109 34 chr21 22278485 22278963 -12628607 + L1ME3A LINE L1 3287 3800 -2346 386 205 139 0 chr21 22278984 22279106 -12628464 + L1ME3A LINE L1 3840 3978 -2168 192 77 0 0 chr21 22279479 22279505 -12628065 + (TA)n Simple_repeat Simple_repeat 1 26 0 760 258 19 5 chr21 22279586 22279795 -12627775 + L1ME3A LINE L1 4897 5108 -1038 405 0 0 0 chr21 22279896 22279941 -12627629 + (CA)n Simple_repeat Simple_repeat 2 46 0 2050 255 17 6 chr21 22280072 22280444 -12627126 + L1ME3A LINE L1 5435 5816 -354 1947 93 31 4 chr21 22280444 22280703 -12626867 + AluSp SINE Alu 13 278 -35 2050 255 17 6 chr21 22280703 22280856 -12626714 + L1ME3A LINE L1 5816 5966 -204 447 223 102 41 chr21 22280909 22281089 -12626481 + L1ME3A LINE L1 5962 6156 -14 483 107 0 0 chr21 22281089 22281164 -12626406 + (CA)n Simple_repeat Simple_repeat 2 76 0 447 223 102 41 chr21 22281164 22281180 -12626390 + L1ME3A LINE L1 6156 6170 0 276 278 14 0 chr21 22281513 22281585 -12625985 + GA-rich Low_complexity Low_complexity 3 75 0 1768 178 0 20 chr21 22281952 22282245 -12625325 + AluJb SINE Alu 1 287 -25 2024 123 3 36 chr21 22282786 22283094 -12624476 + AluSx SINE Alu 1 298 -14 2329 91 0 7 chr21 22283141 22283437 -12624133 + AluSc SINE Alu 1 294 -15 497 71 0 119 chr21 22283593 22283677 -12623893 + AluS SINE Alu 2 75 -238 1968 120 0 4 chr21 22283677 22283952 -12623618 + AluSx SINE Alu 33 306 -6 610 240 71 43 chr21 22283952 22284206 -12623364 + L2 LINE L2 3039 3299 -14 222 37 0 0 chr21 22284450 22284477 -12623093 + (TG)n Simple_repeat Simple_repeat 2 28 0 282 282 13 0 chr21 22284874 22284952 -12622618 + L2 LINE L2 3179 3257 -15 183 80 0 0 chr21 22284954 22284979 -12622591 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 196 336 41 14 chr21 22285365 22285511 -12622059 - L2 LINE L2 -995 2319 2170 2302 112 3 3 chr21 22285928 22286239 -12621331 - AluSx SINE Alu -1 311 1 2197 110 3 7 chr21 22286578 22286877 -12620693 - AluSx SINE Alu -14 298 1 316 295 61 37 chr21 22286975 22287373 -12620197 + L1ME4a LINE L1 5625 6068 -53 2224 108 24 0 chr21 22287677 22287973 -12619597 - AluSx SINE Alu -5 307 5 1242 111 40 127 chr21 22288859 22289111 -12618459 + MER30 DNA MER1_type 1 230 0 333 274 77 0 chr21 22289131 22289248 -12618322 - L2 LINE L2 -2 3311 3186 439 284 171 10 chr21 22289508 22289746 -12617824 - MIR SINE MIR 0 262 2 486 193 0 0 chr21 22290787 22290870 -12616700 + MER104 DNA MER2_type 2 84 -1811 1882 151 9 25 chr21 22290871 22291188 -12616382 + AluSq SINE Alu 1 312 -1 1793 156 82 85 chr21 22291334 22291738 -12615832 + MSTD LTR MaLR 3 396 0 828 286 80 43 chr21 22291946 22292383 -12615187 - MLT1J LTR MaLR -39 472 20 1016 137 113 149 chr21 22292569 22292904 -12614666 - MLT1A2 LTR MaLR -51 323 1 688 267 83 24 chr21 22293944 22294294 -12613276 + MLT1J LTR MaLR 99 494 -17 444 266 42 14 chr21 22294460 22294603 -12612967 + L3 LINE CR1 1189 1335 -242 415 179 127 30 chr21 22294640 22294774 -12612796 - LTR67 LTR ERVL -2 555 409 3468 219 62 2 chr21 22295898 22296719 -12610851 - L1ME1 LINE L1 -9 6157 5290 1412 109 0 0 chr21 22298674 22298857 -12608713 + AluSq SINE Alu 1 183 -130 246 62 0 0 chr21 22298864 22298896 -12608674 + (A)n Simple_repeat Simple_repeat 1 32 0 472 285 67 12 chr21 22299848 22300013 -12607557 + MIR SINE MIR 81 254 -8 22 35 0 0 chr21 22300441 22300470 -12607100 + AT_rich Low_complexity Low_complexity 1 29 0 2428 88 3 0 chr21 22300497 22300804 -12606766 - AluSp SINE Alu -5 308 1 2210 106 7 0 chr21 22301214 22301506 -12606064 - AluSx SINE Alu -18 294 1 316 229 56 0 chr21 22301905 22302000 -12605570 + MIR SINE MIR 66 165 -62 1066 185 65 20 chr21 22302006 22302403 -12605167 - MER31B LTR ERV1 -8 458 1 372 148 54 54 chr21 22303443 22303592 -12603978 + (CGGGG)n Simple_repeat Simple_repeat 4 152 0 27 87 0 0 chr21 22303839 22303908 -12603662 + GC_rich Low_complexity Low_complexity 1 69 0 234 256 23 28 chr21 22303925 22304101 -12603469 + (CGGG)n Simple_repeat Simple_repeat 3 177 0 232 183 21 43 chr21 22304214 22304307 -12603263 + (CCG)n Simple_repeat Simple_repeat 2 92 0 293 178 0 0 chr21 22309359 22309404 -12598166 + MER58 DNA MER1_type 2376 2420 0 1914 98 10 64 chr21 22309496 22309793 -12597777 - AluSc SINE Alu -8 301 21 200 174 43 22 chr21 22311693 22311739 -12595831 + MIR SINE MIR 104 150 -112 188 232 58 43 chr21 22311798 22311867 -12595703 + MIR SINE MIR 64 133 -75 372 283 61 56 chr21 22312006 22312204 -12595366 - Charlie8 DNA MER1_type -2193 224 26 206 241 114 25 chr21 22314655 22314734 -12592836 - MIR SINE MIR -59 203 118 753 253 147 42 chr21 22315035 22315415 -12592155 - L1MC4 LINE L1 -213 7829 7410 374 251 135 18 chr21 22315431 22315594 -12591976 - L1MC4 LINE L1 -673 7369 7188 2274 70 7 13 chr21 22315664 22315965 -12591605 - AluY SINE Alu -12 299 1 244 206 96 59 chr21 22316035 22316171 -12591399 - L1MC5 LINE L1 -340 7621 7481 252 258 103 10 chr21 22316176 22316273 -12591297 - L1MC5 LINE L1 -542 7419 7314 198 0 0 0 chr21 22316273 22316295 -12591275 + (TTTTG)n Simple_repeat Simple_repeat 5 26 0 300 27 0 0 chr21 22316575 22316612 -12590958 + (TG)n Simple_repeat Simple_repeat 2 38 0 550 216 54 20 chr21 22316691 22316839 -12590731 + MIR SINE MIR 108 260 -2 560 269 87 27 chr21 22317445 22317664 -12589906 - L2 LINE L2 0 3313 3082 845 238 79 16 chr21 22317847 22318099 -12589471 - L2 LINE L2 -685 2629 2362 668 250 66 9 chr21 22318693 22318905 -12588665 + MIR SINE MIR 3 226 -36 22 0 0 0 chr21 22318933 22318955 -12588615 + AT_rich Low_complexity Low_complexity 1 22 0 1962 112 42 3 chr21 22319095 22319381 -12588189 - AluSx SINE Alu -15 297 1 1248 154 81 14 chr21 22319982 22320203 -12587367 - MER46A DNA MER2_type 0 236 1 22 0 0 0 chr21 22321416 22321438 -12586132 + AT_rich Low_complexity Low_complexity 1 22 0 261 81 27 0 chr21 22321483 22321520 -12586050 - MER94 DNA DNA -94 40 3 692 191 64 59 chr21 22336573 22336793 -12570777 - L1MC4 LINE L1 -5 8037 7817 1913 173 71 43 chr21 22336836 22336991 -12570579 - L1MC4 LINE L1 -159 7649 7500 2015 132 0 33 chr21 22336991 22337295 -12570275 - AluSx SINE Alu -18 294 1 1913 173 71 43 chr21 22337295 22337676 -12569894 - L1MC4 LINE L1 -308 7500 7101 335 288 118 13 chr21 22337735 22337964 -12569606 - L1MC3 LINE L1 -761 7024 6772 425 211 0 0 chr21 22337973 22338049 -12569521 - L1MC4a LINE L1 -1123 6685 6610 2312 209 102 7 chr21 22338049 22338586 -12568984 + MER7C DNA MER2_type 1 588 -14 451 237 43 0 chr21 22338597 22338690 -12568880 - L1MC4a LINE L1 -1229 6579 6483 503 221 30 23 chr21 22338744 22338875 -12568695 - HAL1 LINE L1 -856 1651 1520 633 236 96 22 chr21 22338983 22339254 -12568316 - HAL1 LINE L1 -1244 1263 973 328 242 66 11 chr21 22339671 22339762 -12567808 - HAL1 LINE L1 -2123 384 289 493 155 0 0 chr21 22339891 22339975 -12567595 + L1MA9 LINE L1 6229 6312 0 360 214 0 0 chr21 22339970 22340040 -12567530 - HAL1 LINE L1 -2417 90 21 1820 134 0 68 chr21 22340244 22340565 -12567005 + AluJb SINE Alu 1 299 -13 2360 226 37 51 chr21 22340679 22341322 -12566248 + MER82 DNA MER2_type 14 647 -6 264 128 64 0 chr21 22341342 22341389 -12566181 - L1ME3A LINE L1 -88 6082 6033 241 276 177 67 chr21 22341457 22341711 -12565859 - L3 LINE CR1 -210 1367 1086 757 150 179 100 chr21 22342485 22342725 -12564845 - L1MB7 LINE L1 0 6184 5926 844 166 88 0 chr21 22342730 22342911 -12564659 - L1MA6 LINE L1 -238 6062 5866 865 139 8 0 chr21 22342943 22343072 -12564498 + AluSq/x SINE Alu 5 134 -179 2967 128 68 0 chr21 22343090 22343573 -12563997 + L1MA6 LINE L1 5428 5943 -357 470 248 90 41 chr21 22344520 22344665 -12562905 + MER5B DNA MER1_type 3 154 -24 22 35 0 0 chr21 22346027 22346056 -12561514 + AT_rich Low_complexity Low_complexity 1 29 0 1377 178 30 4 chr21 22346091 22346242 -12561328 - AluJb SINE Alu -32 280 119 402 21 0 0 chr21 22346242 22346289 -12561281 + (TG)n Simple_repeat Simple_repeat 2 48 0 1377 178 30 4 chr21 22346289 22346373 -12561197 - AluJb SINE Alu -193 119 39 577 68 0 11 chr21 22346393 22346481 -12561089 - L1PB1 LINE L1 0 6151 6065 500 259 129 26 chr21 22346526 22346653 -12560917 - L1MB7 LINE L1 -346 5775 5663 3694 75 16 0 chr21 22346653 22347104 -12560466 - LTR22A LTR ERVK 0 458 1 500 259 129 26 chr21 22347104 22347208 -12560362 - L1MB7 LINE L1 -458 5663 5520 24 0 0 0 chr21 22348108 22348132 -12559438 + AT_rich Low_complexity Low_complexity 1 24 0 840 116 249 17 chr21 22348226 22348399 -12559171 - Tigger2 DNA MER2_type 0 2718 2506 615 179 0 34 chr21 22348400 22348517 -12559053 - Tigger2 DNA MER2_type -2601 117 5 216 97 0 0 chr21 22348605 22348636 -12558934 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 1537 156 17 0 chr21 22348647 22348878 -12558692 - AluSx SINE Alu -77 235 1 520 293 14 0 chr21 22350100 22350240 -12557330 + Charlie1 DNA MER1_type 1447 1588 -1173 759 296 38 15 chr21 22350338 22350605 -12556965 - L3 LINE CR1 -102 1475 1203 24 53 0 0 chr21 22350725 22350763 -12556807 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr21 22350790 22350811 -12556759 + AT_rich Low_complexity Low_complexity 1 21 0 357 290 24 24 chr21 22351066 22351190 -12556380 - L2 LINE L2 -13 3300 3177 240 281 0 141 chr21 22351404 22351539 -12556031 - MIR SINE MIR -63 145 30 891 216 43 0 chr21 22352192 22352377 -12555193 - MER58A DNA MER1_type -28 196 4 209 379 54 15 chr21 22353955 22354216 -12553354 + L2 LINE L2 2014 2284 -1030 257 192 33 125 chr21 22354460 22354580 -12552990 + L1ME4a LINE L1 5947 6055 -66 203 242 15 0 chr21 22354840 22354906 -12552664 + L2 LINE L2 3165 3231 -82 331 195 26 88 chr21 22355170 22355283 -12552287 + LTR67 LTR ERVL 427 532 -25 369 241 89 19 chr21 22362711 22362869 -12544701 + MIR3 SINE MIR 37 205 -3 345 231 19 39 chr21 22362907 22363011 -12544559 + MIR SINE MIR 33 134 -128 533 299 35 0 chr21 22364570 22364767 -12542803 - L1ME1 LINE L1 -16 6150 5947 1533 126 106 17 chr21 22364772 22365074 -12542496 + MER47A DNA MER2_type 37 365 -1 530 203 70 8 chr21 22365087 22365215 -12542355 - L1ME1 LINE L1 -241 5923 5788 761 201 53 6 chr21 22365218 22365387 -12542183 - L1ME1 LINE L1 -418 5748 5572 234 0 0 0 chr21 22365411 22365437 -12542133 + (T)n Simple_repeat Simple_repeat 1 26 0 2396 104 0 0 chr21 22366201 22366508 -12541062 - AluSx SINE Alu -1 311 5 1020 216 90 38 chr21 22366511 22367430 -12540140 - L1ME1 LINE L1 -642 5524 4449 2469 231 72 24 chr21 22367474 22368224 -12539346 - L1ME1 LINE L1 -1788 4358 3573 2194 30 0 0 chr21 22368224 22368488 -12539082 - L1PA3 LINE L1 -896 5250 4987 7746 22 10 0 chr21 22368488 22369410 -12538160 + L1PA3 LINE L1 5223 6155 0 445 183 122 9 chr21 22369411 22369526 -12538044 - L1ME1 LINE L1 -2570 3576 3449 784 228 56 32 chr21 22369528 22369652 -12537918 - L1ME1 LINE L1 -2652 3494 3374 1898 159 0 0 chr21 22369652 22369942 -12537628 - AluJb SINE Alu -22 290 1 784 228 56 32 chr21 22369942 22370067 -12537503 - L1ME1 LINE L1 -2772 3374 3239 877 250 53 24 chr21 22370168 22370508 -12537062 - L1ME1 LINE L1 -2972 3174 2825 1734 227 42 9 chr21 22370526 22370984 -12536586 - L1ME1 LINE L1 -3401 2745 2273 545 322 91 42 chr21 22371212 22371641 -12535929 - L2 LINE L2 -14 3299 2850 189 74 0 0 chr21 22372343 22372370 -12535200 + (TG)n Simple_repeat Simple_repeat 2 28 0 183 319 103 17 chr21 22374157 22374273 -12533297 - MIR SINE MIR -14 248 123 3353 92 2 101 chr21 22375685 22376252 -12531318 - MER9 LTR ERVK 0 511 1 2385 60 3 0 chr21 22376891 22377205 -12530365 - AluY SINE Alu 0 317 3 2903 205 62 10 chr21 22379342 22379951 -12527619 - MER82 DNA MER2_type -6 647 7 2590 146 21 12 chr21 22380989 22381413 -12526157 - MSTA LTR MaLR 0 428 1 364 294 89 28 chr21 22381524 22381942 -12525628 - L1ME3A LINE L1 -272 5898 5452 22 35 0 0 chr21 22382040 22382069 -12525501 + AT_rich Low_complexity Low_complexity 1 29 0 2451 85 0 3 chr21 22382178 22382483 -12525087 + AluSq SINE Alu 1 304 -9 1753 288 155 7 chr21 22382538 22383404 -12524166 + L2 LINE L2 36 1029 -2285 614 276 118 57 chr21 22383463 22383971 -12523599 + L2 LINE L2 1152 1690 -1624 2048 112 30 10 chr21 22383984 22384279 -12523291 + AluSx SINE Alu 1 301 -11 1577 157 53 0 chr21 22384645 22384926 -12522644 + L1MA8 LINE L1 5992 6287 -4 2226 111 0 3 chr21 22385297 22385595 -12521975 + AluSq SINE Alu 1 297 -16 2311 73 0 54 chr21 22386548 22386865 -12520705 + AluY SINE Alu 1 300 -11 1565 202 80 51 chr21 22386982 22387237 -12520333 + LTR37B LTR ERV1 6 252 -216 270 0 0 0 chr21 22387237 22387267 -12520303 + (TG)n Simple_repeat Simple_repeat 1 30 0 1422 163 0 107 chr21 22387275 22387594 -12519976 - AluJb SINE Alu -17 285 1 1565 202 80 51 chr21 22387594 22387779 -12519791 + LTR37B LTR ERV1 258 468 0 2327 116 0 0 chr21 22388030 22388333 -12519237 - AluSx SINE Alu -9 303 1 1993 139 13 7 chr21 22388813 22389123 -12518447 - AluJb SINE Alu 0 312 1 2493 84 0 0 chr21 22390519 22390830 -12516740 - AluSx SINE Alu -1 311 1 34 0 0 0 chr21 22391060 22391094 -12516476 + AT_rich Low_complexity Low_complexity 1 34 0 2220 98 0 3 chr21 22391105 22391392 -12516178 + AluSc SINE Alu 1 286 -23 25780 89 40 20 chr21 22391395 22394447 -12513123 - MER61A-int LTR ERV1 -13 5204 2065 4585 72 8 18 chr21 22394447 22394958 -12512612 - LTR10C LTR ERV1 0 591 85 2387 86 0 7 chr21 22394958 22395259 -12512311 - AluY SINE Alu -12 299 1 4585 72 8 18 chr21 22395259 22395344 -12512226 - LTR10C LTR ERV1 -506 85 1 25780 89 40 20 chr21 22395344 22395969 -12511601 - MER61A-int LTR ERV1 -3152 2065 1454 303 93 0 0 chr21 22395994 22396037 -12511533 - MER61A-int LTR ERV1 -3855 1362 1320 2850 174 98 35 chr21 22396067 22396732 -12510838 - MER61A-int LTR ERV1 -4510 707 1 1712 138 101 22 chr21 22396732 22397050 -12510520 - MER61A LTR ERV1 0 343 1 238 311 44 0 chr21 22397241 22397344 -12510226 - MIR SINE MIR -57 205 98 1972 147 23 10 chr21 22398108 22398415 -12509155 - AluJb SINE Alu -1 311 1 1049 190 59 136 chr21 22399227 22399397 -12508173 - MLT1C LTR MaLR 0 467 285 252 0 0 0 chr21 22399397 22399425 -12508145 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 1049 190 59 136 chr21 22399425 22399584 -12507986 - MLT1C LTR MaLR -182 285 188 2025 136 31 7 chr21 22399584 22399878 -12507692 - AluSx SINE Alu -11 301 1 1049 190 59 136 chr21 22399878 22400053 -12507517 - MLT1C LTR MaLR -279 188 1 229 245 20 0 chr21 22400057 22400106 -12507464 + L2 LINE L2 3207 3256 -16 1680 208 0 3 chr21 22400193 22400501 -12507069 - AluJb SINE Alu -5 307 1 2239 121 0 3 chr21 22401367 22401673 -12505897 - AluSx SINE Alu -5 307 3 453 194 87 10 chr21 22401902 22402005 -12505565 - Charlie4 DNA MER1_type -1 1960 1850 3884 216 93 38 chr21 22402859 22403514 -12504056 + L1MD2 LINE L1 803 1421 -4985 2040 124 0 7 chr21 22403514 22403841 -12503729 + AluSx SINE Alu 1 325 0 3884 216 93 38 chr21 22403841 22405715 -12501855 + L1MD2 LINE L1 1421 3444 -2962 360 241 46 0 chr21 22405730 22405817 -12501753 + L1MD2 LINE L1 3490 3580 -2826 902 188 76 18 chr21 22406035 22406258 -12501312 + L1MD2 LINE L1 3800 4035 -2371 827 222 5 53 chr21 22406254 22406461 -12501109 + L1MD2 LINE L1 5635 5831 -671 1178 165 21 5 chr21 22406461 22406655 -12500915 - AluJo SINE Alu -115 197 1 1645 213 72 15 chr21 22406659 22407048 -12500522 + L1MD2 LINE L1 5840 6250 -369 275 279 29 58 chr21 22407176 22407280 -12500290 + L2 LINE L2 3172 3272 0 1273 247 19 6 chr21 22408211 22408535 -12499035 - MER104 DNA MER2_type -1412 483 156 230 271 139 30 chr21 22408707 22408873 -12498697 - L2 LINE L2 -17 3296 3113 361 250 27 18 chr21 22409001 22409113 -12498457 + MER81 DNA DNA 2 114 0 1042 139 18 0 chr21 22410005 22410171 -12497399 - L1PA10 LINE L1 -1 6167 5999 23 0 0 0 chr21 22411461 22411484 -12496086 + AT_rich Low_complexity Low_complexity 1 23 0 353 196 78 20 chr21 22411485 22411587 -12495983 + L1MC5 LINE L1 7817 7924 -37 22 35 0 0 chr21 22412389 22412418 -12495152 + AT_rich Low_complexity Low_complexity 1 29 0 268 242 20 3 chr21 22413579 22413681 -12493889 + MER5A DNA MER1_type 58 189 0 2264 159 57 9 chr21 22415901 22416342 -12491228 + MLT1C LTR MaLR 2 463 -4 1997 156 0 13 chr21 22416758 22417072 -12490498 - AluJb SINE Alu -2 310 1 431 286 23 30 chr21 22418958 22419091 -12488479 - MIR SINE MIR -111 151 20 1568 251 71 35 chr21 22419121 22419643 -12487927 + MLT2B3 LTR ERVL 1 544 -10 2298 101 13 66 chr21 22419643 22420039 -12487531 + THE1C LTR MaLR 1 375 0 1568 251 71 35 chr21 22420039 22420051 -12487519 + MLT2B3 LTR ERVL 544 554 0 207 100 0 0 chr21 22420208 22420238 -12487332 + (CA)n Simple_repeat Simple_repeat 1 30 0 2127 118 3 0 chr21 22422364 22422652 -12484918 + AluSx SINE Alu 1 289 -23 259 235 101 25 chr21 22422695 22422814 -12484756 + MER5B DNA MER1_type 51 178 0 396 0 0 0 chr21 22423292 22423336 -12484234 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2182 116 59 34 chr21 22423643 22423998 -12483572 + THE1B LTR MaLR 1 364 0 430 192 30 10 chr21 22424739 22424838 -12482732 + MER5A DNA MER1_type 9 109 -80 1206 187 67 11 chr21 22425160 22425427 -12482143 - L1MA8 LINE L1 -3 6288 6007 28 0 0 0 chr21 22425835 22425863 -12481707 + AT_rich Low_complexity Low_complexity 1 28 0 228 300 11 0 chr21 22425922 22426012 -12481558 + L1MC/D LINE L1 5728 5818 -515 1696 145 7 0 chr21 22426124 22426393 -12481177 + AluSx SINE Alu 35 305 -7 23 54 0 0 chr21 22426610 22426647 -12480923 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr21 22426901 22426931 -12480639 + AT_rich Low_complexity Low_complexity 1 30 0 1013 199 19 75 chr21 22427641 22427908 -12479662 + AluJo SINE Alu 43 294 -18 674 136 122 48 chr21 22429566 22429713 -12477857 + AluJb SINE Alu 144 301 -11 1300 96 0 0 chr21 22430067 22430244 -12477326 - AluSg/x SINE Alu 0 310 134 2826 142 68 37 chr21 22430279 22430848 -12476722 - L1MB5 LINE L1 0 6174 5588 2223 110 3 16 chr21 22430933 22431242 -12476328 + AluSx SINE Alu 1 305 -7 405 0 0 0 chr21 22432454 22432499 -12475071 + (TG)n Simple_repeat Simple_repeat 1 45 0 186 43 0 0 chr21 22432498 22432521 -12475049 + (GA)n Simple_repeat Simple_repeat 1 23 0 310 305 77 13 chr21 22433316 22433466 -12474104 + MIR3 SINE MIR 11 167 -61 822 252 47 56 chr21 22433709 22434212 -12473358 - L2 LINE L2 -42 3271 2761 2249 129 0 0 chr21 22435550 22435861 -12471709 - AluSx SINE Alu -1 311 1 1589 270 52 32 chr21 22435869 22436502 -12471068 - L1MC4a LINE L1 -1762 6046 5401 231 289 48 18 chr21 22436502 22436668 -12470902 - L1P LINE L1 -804 5342 5172 241 249 88 55 chr21 22436901 22437082 -12470488 - L1MEc LINE L1 -1227 5313 5127 402 21 0 0 chr21 22437770 22437817 -12469753 + (CA)n Simple_repeat Simple_repeat 2 48 0 355 291 56 19 chr21 22437852 22438065 -12469505 - L1MEc LINE L1 -2196 4344 4124 210 259 24 35 chr21 22438093 22438178 -12469392 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 860 293 45 8 chr21 22438186 22438736 -12468834 + L1MEc LINE L1 2081 2614 -3601 341 261 103 36 chr21 22438748 22438913 -12468657 - L1MEc LINE L1 -4268 2453 2278 2641 121 38 10 chr21 22438924 22439321 -12468249 + MSTA LTR MaLR 18 425 -3 409 319 12 24 chr21 22439400 22439569 -12468001 - L1MEc LINE L1 -4566 2155 1989 274 291 47 8 chr21 22439582 22439709 -12467861 - HAL1 LINE L1 -871 1636 1505 1388 197 35 21 chr21 22439754 22439949 -12467621 - AluJo SINE Alu -16 296 94 2432 126 22 0 chr21 22439949 22440305 -12467265 - THE1B LTR MaLR 0 364 1 1388 197 35 21 chr21 22440305 22440399 -12467171 - AluJo SINE Alu -218 94 3 447 290 42 42 chr21 22440407 22440717 -12466853 - L1MEc LINE L1 -4785 1755 1446 2105 113 3 14 chr21 22440903 22441194 -12466376 - AluSq SINE Alu -25 288 1 22 35 0 0 chr21 22442292 22442321 -12465249 + AT_rich Low_complexity Low_complexity 1 29 0 1729 134 11 11 chr21 22442376 22442660 -12464910 - MER47A DNA MER2_type -36 330 47 1064 196 51 17 chr21 22442668 22442964 -12464606 - MER33 DNA MER1_type -30 294 1 558 265 73 83 chr21 22443017 22443212 -12464358 - L1MEd LINE L1 -2797 3332 3137 1712 158 45 14 chr21 22443212 22443504 -12464066 - AluSx SINE Alu -7 305 5 558 265 73 83 chr21 22443504 22443949 -12463621 - L1MEd LINE L1 -2992 3137 2698 580 265 63 53 chr21 22444102 22444338 -12463232 - L1MEd LINE L1 -4862 1257 1025 1843 194 0 0 chr21 22444338 22444642 -12462928 - AluSx SINE Alu -8 304 1 580 265 63 53 chr21 22444642 22444818 -12462752 - L1MEd LINE L1 -5094 1025 838 2342 101 0 0 chr21 22444818 22445114 -12462456 - AluSg SINE Alu -14 296 1 580 265 63 53 chr21 22445114 22445130 -12462440 - L1MEd LINE L1 -5281 838 824 365 335 88 45 chr21 22445253 22445629 -12461941 - L1MEd LINE L1 -5356 763 372 2275 101 14 0 chr21 22447751 22448048 -12459522 - AluSp SINE Alu -12 301 1 283 250 50 10 chr21 22448156 22448256 -12459314 + L1 LINE L1 2215 2318 -3828 2301 106 3 0 chr21 22448413 22448715 -12458855 - AluSx SINE Alu -9 303 1 281 200 136 9 chr21 22449146 22449256 -12458314 - L1M4 LINE L1 -854 5292 5169 382 309 48 6 chr21 22449891 22450059 -12457511 + MLT1L LTR MaLR 432 606 -9 198 0 0 0 chr21 22451707 22451729 -12455841 + (CA)n Simple_repeat Simple_repeat 2 23 0 382 291 17 0 chr21 22452244 22452361 -12455209 + MIR3 SINE MIR 82 200 -8 980 281 87 12 chr21 22453654 22453988 -12453582 + MLT1J LTR MaLR 1 359 -152 640 321 69 5 chr21 22454055 22454488 -12453082 - L2 LINE L2 -1064 2250 1790 1789 164 7 23 chr21 22454507 22454811 -12452759 + AluJb SINE Alu 1 299 -13 252 262 0 33 chr21 22454859 22454920 -12452650 + polypyrimidine Low_complexity Low_complexity 1 59 0 252 0 0 0 chr21 22454942 22454970 -12452600 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2046 126 0 0 chr21 22454974 22455245 -12452325 - AluSx SINE Alu -37 275 5 267 365 10 30 chr21 22455449 22455646 -12451924 - L2 LINE L2 -1899 1415 1223 2131 152 34 3 chr21 22455784 22456139 -12451431 + MER47A DNA MER2_type 1 366 0 468 222 12 80 chr21 22456792 22456882 -12450688 + MER5B DNA MER1_type 27 103 -75 604 238 85 6 chr21 22456882 22457046 -12450524 + MER45A DNA AcHobo 1 177 -1 468 222 12 80 chr21 22457046 22457117 -12450453 + MER5B DNA MER1_type 103 177 -1 2901 78 69 17 chr21 22458504 22458547 -12449023 - MLT2A1 LTR ERVL 0 444 405 450 0 0 0 chr21 22458547 22458597 -12448973 + (TCTA)n Simple_repeat Simple_repeat 1 50 0 2901 78 69 17 chr21 22458597 22458975 -12448595 - MLT2A1 LTR ERVL -39 405 1 852 98 0 0 chr21 22459102 22459225 -12448345 + L1MB3 LINE L1 5360 5482 -689 687 147 0 0 chr21 22459231 22459347 -12448223 + (GGGA)n Simple_repeat Simple_repeat 4 119 0 700 173 76 30 chr21 22459347 22459845 -12447725 + L1MB3 LINE L1 5484 5957 -226 1721 171 28 40 chr21 22459845 22460197 -12447373 - MER7A DNA MER2_type 0 346 1 700 173 76 30 chr21 22460197 22460241 -12447329 + L1MB3 LINE L1 5957 5998 -185 2121 141 0 13 chr21 22460241 22460553 -12447017 + AluSx SINE Alu 1 308 -4 700 173 76 30 chr21 22460553 22460601 -12446969 + L1MB3 LINE L1 5998 6181 -2 2372 78 3 0 chr21 22461907 22462200 -12445370 + AluY SINE Alu 1 294 -17 322 117 78 0 chr21 22462232 22462309 -12445261 - Charlie7 DNA MER1_type -112 2500 2418 722 233 11 17 chr21 22462303 22462483 -12445087 - Charlie7 DNA MER1_type -1891 721 543 1418 120 13 139 chr21 22462489 22462798 -12444772 - AluJo SINE Alu -9 303 34 314 350 22 6 chr21 22462836 22463019 -12444551 - Charlie7 DNA MER1_type -2117 495 310 1979 186 59 35 chr21 22463147 22463603 -12443967 - MLT1C LTR MaLR 0 467 1 2075 138 43 30 chr21 22463820 22464189 -12443381 + THE1C LTR MaLR 1 374 -1 1845 169 7 0 chr21 22464363 22464653 -12442917 - AluJb SINE Alu -20 292 1 3341 170 20 2 chr21 22464702 22465291 -12442279 + L1MB5 LINE L1 5573 6172 -2 189 0 0 0 chr21 22465476 22465497 -12442073 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 2190 125 0 0 chr21 22466664 22466960 -12440610 + AluY SINE Alu 1 296 -15 6246 111 7 3 chr21 22466973 22468535 -12439035 + L1PA15 LINE L1 4594 6165 0 2259 92 3 3 chr21 22469096 22469388 -12438182 + AluSg SINE Alu 11 302 -8 867 155 27 7 chr21 22469395 22469543 -12438027 - AluSg/x SINE Alu -34 276 126 1118 229 45 40 chr21 22469543 22469919 -12437651 + L1MD2 LINE L1 4862 5239 -907 2200 168 21 16 chr21 22469919 22470295 -12437275 - MSTB LTR MaLR 0 426 49 267 103 0 0 chr21 22470296 22470335 -12437235 + (TCCCC)n Simple_repeat Simple_repeat 5 43 0 2065 91 7 18 chr21 22470344 22470620 -12436950 - AluSx SINE Alu -4 308 36 308 151 19 0 chr21 22470676 22470729 -12436841 + MER5B DNA MER1_type 1 54 -124 460 34 7 0 chr21 22470751 22470811 -12436759 - MSTB LTR MaLR -365 63 1 2812 157 54 15 chr21 22470830 22471351 -12436219 + L1MD2 LINE L1 5254 5794 -565 735 166 80 20 chr21 22471346 22471497 -12436073 + L1MD2 LINE L1 6198 6357 -2 2311 97 0 0 chr21 22471511 22471801 -12435769 + AluY SINE Alu 1 290 -21 4512 139 10 6 chr21 22471941 22472227 -12435343 + L1MC1 LINE L1 5618 5901 -432 1751 186 45 6 chr21 22472227 22472561 -12435009 + MER7A DNA MER2_type 1 345 -1 4512 139 10 6 chr21 22472561 22472984 -12434586 + L1MC1 LINE L1 5901 6330 -3 254 114 0 0 chr21 22472995 22473030 -12434540 + U2 snRNA snRNA 1 35 -153 873 255 67 24 chr21 22475031 22475372 -12432198 - L1MC4 LINE L1 0 8042 7687 373 295 8 23 chr21 22475754 22475883 -12431687 - MIR3 SINE MIR -5 203 77 900 217 68 17 chr21 22476874 22477109 -12430461 - MIR SINE MIR -11 251 5 1678 241 63 54 chr21 22477365 22477541 -12430029 + MLT1F LTR MaLR 2 175 -367 1488 116 0 0 chr21 22477541 22477731 -12429839 + AluSc SINE Alu 1 190 -119 1678 241 63 54 chr21 22477731 22478090 -12429480 + MLT1F LTR MaLR 175 542 0 260 360 24 8 chr21 22479011 22479136 -12428434 - L2 LINE L2 0 3313 3187 2313 110 0 0 chr21 22479694 22479994 -12427576 + AluSx SINE Alu 1 300 -12 893 286 48 4 chr21 22480059 22480332 -12427238 - MLT1I LTR MaLR -124 285 1 2172 106 0 0 chr21 22480872 22481191 -12426379 + AluY SINE Alu 1 319 0 604 246 0 8 chr21 22481809 22481939 -12425631 - MER5B DNA MER1_type 0 178 50 2577 100 8 22 chr21 22482119 22482488 -12425082 + THE1B LTR MaLR 1 364 0 1485 204 138 49 chr21 22482496 22482946 -12424624 + MLT1D LTR MaLR 12 501 -4 8298 152 28 36 chr21 22483854 22485443 -12422127 - L1MC3 LINE L1 0 7785 6153 324 0 0 0 chr21 22486689 22486725 -12420845 + (CA)n Simple_repeat Simple_repeat 1 36 0 929 317 48 32 chr21 22487591 22488156 -12419414 + L2 LINE L2 1479 2052 -1262 2393 230 56 5 chr21 22488166 22488966 -12418604 + L1MEc LINE L1 2106 2898 -3317 313 292 96 31 chr21 22488988 22489279 -12418291 - L2 LINE L2 -1152 2162 1853 286 316 45 23 chr21 22489407 22489584 -12417986 - L2 LINE L2 -1603 1711 1531 213 39 0 0 chr21 22490596 22490622 -12416948 + (TA)n Simple_repeat Simple_repeat 1 26 0 556 305 119 27 chr21 22493096 22493686 -12413884 + L2 LINE L2 2249 2892 -422 432 291 55 0 chr21 22493939 22494066 -12413504 + L2 LINE L2 3180 3313 0 1599 189 33 33 chr21 22494990 22495355 -12412215 + MLT1A1 LTR MaLR 1 365 0 2520 148 40 12 chr21 22495659 22496079 -12411491 + MSTB1 LTR MaLR 1 432 0 365 270 9 43 chr21 22496160 22496275 -12411295 - MIR SINE MIR -147 115 5 2111 163 2 56 chr21 22497927 22498339 -12409231 + MLT1B LTR MaLR 1 390 0 380 279 99 45 chr21 22498345 22498567 -12409003 + L2 LINE L2 3079 3312 -1 214 316 12 35 chr21 22498973 22499144 -12408426 + (TATATG)n Simple_repeat Simple_repeat 6 172 0 692 175 24 0 chr21 22499941 22500067 -12407503 + FRAM SINE Alu 39 167 -9 1812 165 63 79 chr21 22500278 22500721 -12406849 - MER63B DNA MER1_type 0 436 1 252 0 0 0 chr21 22501374 22501402 -12406168 + (CA)n Simple_repeat Simple_repeat 1 28 0 598 335 29 23 chr21 22501741 22502087 -12405483 - L1ME LINE L1 -299 5822 5475 450 208 69 20 chr21 22503249 22503350 -12404220 - MER63 DNA MER1_type -330 732 1 1794 212 53 5 chr21 22504319 22504716 -12402854 - MER63B DNA MER1_type -20 416 1 2376 92 7 0 chr21 22506468 22506761 -12400809 - AluSq SINE Alu -18 295 1 2186 100 0 30 chr21 22507805 22508105 -12399465 + AluSx SINE Alu 1 291 -21 2038 138 14 86 chr21 22511675 22512031 -12395539 + MLT1B LTR MaLR 1 324 -66 2275 109 0 6 chr21 22512031 22512343 -12395227 + AluSg SINE Alu 1 310 0 2038 138 14 86 chr21 22512343 22512406 -12395164 + MLT1B LTR MaLR 324 390 0 288 255 71 10 chr21 22514122 22514220 -12393350 - MER5B DNA MER1_type -3 175 72 1812 187 75 67 chr21 22514803 22515311 -12392259 + MLT2B1 LTR ERVL 1 512 -8 12220 183 52 33 chr21 22515316 22517290 -12390280 + ERVL LTR ERVL 2 1937 -3827 2573 119 6 0 chr21 22517290 22517650 -12389920 - THE1B LTR MaLR 0 364 3 11005 105 33 3 chr21 22517656 22519185 -12388385 - THE1B-int LTR MaLR -4 1576 1 2726 97 6 0 chr21 22519185 22519547 -12388023 - THE1B LTR MaLR 0 364 1 12220 183 52 33 chr21 22519547 22520002 -12387568 + ERVL LTR ERVL 1940 2485 -3279 5202 152 26 18 chr21 22520001 22520854 -12386716 + ERVL LTR ERVL 3067 3926 -1838 5168 159 47 11 chr21 22520851 22521656 -12385914 + ERVL LTR ERVL 4536 5363 -291 249 108 0 0 chr21 22521656 22521693 -12385877 + (TG)n Simple_repeat Simple_repeat 2 38 0 5168 159 47 11 chr21 22521693 22521994 -12385576 + ERVL LTR ERVL 5363 5652 -2 1674 245 62 2 chr21 22521996 22522417 -12385153 + MLT2B1 LTR ERVL 1 446 -74 209 320 94 16 chr21 22523329 22523457 -12384113 + L2 LINE L2 2913 3050 -222 325 310 86 17 chr21 22523733 22523849 -12383721 + L2 LINE L2 3141 3264 -8 180 111 0 0 chr21 22523851 22523878 -12383692 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 816 309 94 22 chr21 22524571 22524975 -12382595 - MLT1J1 LTR MaLR 0 446 14 283 210 74 12 chr21 22526014 22526094 -12381476 - MER20B DNA MER1_type 0 784 700 1847 163 14 81 chr21 22526094 22526149 -12381421 - MLT1B LTR MaLR 0 390 333 2082 144 12 24 chr21 22526149 22526490 -12381080 + MER1B DNA MER1_type 1 337 0 1847 163 14 81 chr21 22526490 22526852 -12380718 - MLT1B LTR MaLR -57 333 1 1305 274 117 5 chr21 22527071 22527490 -12380080 - MER20B DNA MER1_type -279 505 40 35 0 0 0 chr21 22529319 22529354 -12378216 + AT_rich Low_complexity Low_complexity 1 35 0 634 299 54 17 chr21 22530282 22530523 -12377047 - MIR SINE MIR -1 261 12 1770 226 78 7 chr21 22531042 22531450 -12376120 - MLT1J1 LTR MaLR 0 446 10 3900 279 78 50 chr21 22531518 22532363 -12375207 + Charlie7 DNA MER1_type 3 823 -1789 2198 114 0 13 chr21 22532363 22532678 -12374892 - AluSx SINE Alu -1 311 1 3900 279 78 50 chr21 22532678 22534012 -12373558 + Charlie7 DNA MER1_type 823 2244 -368 5556 137 33 55 chr21 22534317 22534940 -12372630 + L1MA7 LINE L1 5157 5751 -540 1937 116 0 0 chr21 22534940 22535198 -12372372 - AluSg1 SINE Alu -12 297 40 5556 137 33 55 chr21 22535198 22535726 -12371844 + L1MA7 LINE L1 5751 6289 -2 196 307 80 0 chr21 22536346 22536421 -12371149 - MIR SINE MIR -3 259 179 385 206 0 37 chr21 22536885 22536992 -12370578 + MER5B DNA MER1_type 64 166 -12 523 126 11 0 chr21 22538278 22538373 -12369197 + MER5A DNA MER1_type 9 104 -85 2028 139 0 10 chr21 22538834 22539128 -12368442 - AluJb SINE Alu -21 291 1 480 273 19 19 chr21 22539537 22539691 -12367879 + MER5B DNA MER1_type 1 154 -24 1905 118 0 7 chr21 22539815 22540086 -12367484 - AluJo SINE Alu -18 294 26 404 112 12 75 chr21 22540086 22540166 -12367404 - MER5A DNA MER1_type -114 75 1 527 229 40 55 chr21 22540512 22540713 -12366857 - L1MEd LINE L1 -4880 1239 1042 349 264 37 95 chr21 22540772 22541045 -12366525 - L1MEd LINE L1 -5219 900 644 4540 123 45 7 chr21 22542353 22543078 -12364492 + L1MC1 LINE L1 5575 6327 -6 2295 189 62 14 chr21 22544585 22544952 -12362618 + MLT1D LTR MaLR 1 399 -106 1828 143 7 0 chr21 22544952 22545281 -12362289 + AluSx SINE Alu 1 331 0 2295 189 62 14 chr21 22545281 22545394 -12362176 + MLT1D LTR MaLR 399 505 0 2070 161 20 40 chr21 22545644 22546042 -12361528 - MLT1B LTR MaLR 0 390 1 406 286 23 51 chr21 22546347 22546564 -12361006 + L1ME LINE L1 4958 5168 -978 713 337 62 7 chr21 22546698 22547137 -12360433 + L1ME LINE L1 5351 5813 -349 200 163 0 41 chr21 22547427 22547476 -12360094 + C-rich Low_complexity Low_complexity 1 47 0 632 121 0 0 chr21 22547696 22547795 -12359775 + L1PA16 LINE L1 6068 6166 0 1749 160 3 7 chr21 22549229 22549516 -12358054 + AluJb SINE Alu 3 288 -24 2286 76 0 13 chr21 22551954 22552258 -12355312 - AluY SINE Alu -11 300 1 188 168 115 195 chr21 22552809 22552922 -12354648 + L2 LINE L2 3188 3291 -22 1908 158 93 25 chr21 22553325 22553724 -12353846 + MSTB LTR MaLR 1 426 0 475 241 15 29 chr21 22553725 22553862 -12353708 + Charlie8 DNA MER1_type 94 228 -2189 1127 212 92 77 chr21 22553946 22554450 -12353120 + MLT1G3 LTR MaLR 1 595 0 387 0 0 0 chr21 22555018 22555059 -12352511 + (TG)n Simple_repeat Simple_repeat 1 84 0 387 0 0 0 chr21 22555059 22555102 -12352468 + (TG)n Simple_repeat Simple_repeat 2 44 0 1355 113 24 14 chr21 22555119 22555331 -12352239 - AluSg/x SINE Alu -22 288 75 23 0 0 0 chr21 22555399 22555422 -12352148 + AT_rich Low_complexity Low_complexity 1 23 0 1032 258 108 63 chr21 22555455 22555864 -12351706 - L1ME4a LINE L1 -48 6073 5629 1596 97 31 13 chr21 22555864 22556090 -12351480 - MER30 DNA MER1_type 0 230 1 1032 258 108 63 chr21 22556090 22556253 -12351317 - L1ME4a LINE L1 -492 5629 5475 22 0 0 0 chr21 22557132 22557154 -12350416 + AT_rich Low_complexity Low_complexity 1 22 0 261 350 39 0 chr21 22558249 22558352 -12349218 + L2 LINE L2 3192 3298 -15 2440 112 123 5 chr21 22559195 22559578 -12347992 - MSTA LTR MaLR 0 428 1 328 331 68 0 chr21 22559770 22559933 -12347637 + LTR33 LTR ERVL 3 176 -345 636 241 56 20 chr21 22561473 22561668 -12345902 - MIR SINE MIR -19 243 42 2883 101 25 0 chr21 22561709 22562116 -12345454 + HSMAR1 DNA Mariner 1 417 -870 1725 161 51 67 chr21 22562537 22562927 -12344643 - MLT1B LTR MaLR 0 390 7 189 0 0 0 chr21 22563567 22563588 -12343982 + (A)n Simple_repeat Simple_repeat 1 21 0 2010 139 0 13 chr21 22564452 22564761 -12342809 - AluJo SINE Alu -7 305 1 286 310 26 9 chr21 22564843 22564959 -12342611 - MIR3 SINE MIR -30 178 61 189 178 0 0 chr21 22565185 22565230 -12342340 + (TG)n Simple_repeat Simple_repeat 1 45 0 2171 123 0 0 chr21 22566109 22566418 -12341152 - AluSx SINE Alu -2 310 2 541 263 43 43 chr21 22568789 22569116 -12338454 - HAL1 LINE L1 -1073 1434 1108 24 0 0 0 chr21 22569166 22569190 -12338380 + AT_rich Low_complexity Low_complexity 1 24 0 189 0 0 0 chr21 22570320 22570341 -12337229 + (GGA)n Simple_repeat Simple_repeat 3 23 0 3601 182 54 25 chr21 22570792 22570966 -12336604 + L1MB7 LINE L1 5328 5496 -688 2183 115 0 3 chr21 22570966 22571278 -12336292 + AluSx SINE Alu 1 311 -1 3601 182 54 25 chr21 22571278 22571904 -12335666 + L1MB7 LINE L1 5496 6151 -33 991 135 0 13 chr21 22571905 22572061 -12335509 + FRAM SINE Alu 12 165 -11 313 353 43 0 chr21 22572156 22572272 -12335298 - MIR SINE MIR -22 240 120 782 187 26 26 chr21 22573267 22573422 -12334148 - FRAM SINE Alu -11 155 1 413 296 78 7 chr21 22573492 22573634 -12333936 + MER117 DNA MER1_type 19 170 -27 1941 145 3 0 chr21 22576869 22577179 -12330391 + AluSx SINE Alu 1 311 -1 1974 90 83 0 chr21 22578241 22578529 -12329041 + AluJb SINE Alu 1 312 0 2452 126 0 3 chr21 22578745 22579111 -12328459 + L1PA13 LINE L1 5788 6152 -11 315 0 0 0 chr21 22579134 22579169 -12328401 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 209 200 0 0 chr21 22579174 22579214 -12328356 + L2 LINE L2 3215 3254 -18 2019 133 3 0 chr21 22579585 22579885 -12327685 - AluSx SINE Alu -11 301 1 304 312 0 32 chr21 22579925 22579991 -12327579 + MIR3 SINE MIR 116 180 -28 1651 171 7 7 chr21 22579991 22580290 -12327280 - AluJb SINE Alu -13 299 1 304 312 0 32 chr21 22580290 22580316 -12327254 + MIR3 SINE MIR 180 205 -3 2467 212 90 72 chr21 22580320 22580931 -12326639 + L1MD2 LINE L1 5464 6062 -297 1772 142 0 28 chr21 22580931 22581219 -12326351 + AluJo SINE Alu 1 280 -32 2467 212 90 72 chr21 22581219 22581244 -12326326 + L1MD2 LINE L1 6062 6085 -274 2035 121 3 0 chr21 22581244 22581533 -12326037 + AluSx SINE Alu 2 291 -21 2467 212 90 72 chr21 22581533 22581772 -12325798 + L1MD2 LINE L1 6085 6359 0 2862 92 16 35 chr21 22582626 22583059 -12324511 + MSTA LTR MaLR 4 428 0 814 127 24 8 chr21 22583235 22583361 -12324209 - FLAM_C SINE Alu -5 128 1 388 188 115 0 chr21 22583377 22583473 -12324097 - L1MA9 LINE L1 -38 6274 6168 280 261 23 11 chr21 22584899 22584987 -12322583 - L2 LINE L2 -66 3247 3159 212 256 73 0 chr21 22585041 22585123 -12322447 + MER91C DNA MER1_type 51 138 -2 1281 164 13 21 chr21 22585236 22585474 -12322096 + MLT1D LTR MaLR 1 236 -269 1994 134 13 7 chr21 22585477 22585838 -12321732 + AluSx SINE Alu 1 363 0 1306 195 45 69 chr21 22585838 22586171 -12321399 + MLT1D LTR MaLR 181 505 0 23 33 0 0 chr21 22586497 22586527 -12321043 + AT_rich Low_complexity Low_complexity 1 30 0 2015 115 0 0 chr21 22586527 22586813 -12320757 - AluSx SINE Alu -26 286 1 938 256 46 52 chr21 22587190 22587514 -12320056 - L2 LINE L2 -789 2525 2204 3028 204 91 44 chr21 22587522 22588181 -12319389 - L1ME1 LINE L1 -5 6144 5414 1890 133 14 3 chr21 22588181 22588475 -12319095 + AluSx SINE Alu 1 297 -15 3028 204 91 44 chr21 22588475 22588815 -12318755 - L1ME1 LINE L1 -735 5414 5091 413 272 61 31 chr21 22588821 22589232 -12318338 - L1ME1 LINE L1 -4863 1256 924 988 318 51 48 chr21 22589332 22589468 -12318102 - L1MDa LINE L1 -2983 3557 3423 1508 183 3 43 chr21 22589468 22589791 -12317779 - AluJo SINE Alu -2 310 1 988 318 51 48 chr21 22589791 22590223 -12317347 - L1MDa LINE L1 -3117 3423 2987 1955 148 0 0 chr21 22590515 22590819 -12316751 - AluSx SINE Alu -8 304 1 309 256 72 103 chr21 22590829 22590939 -12316631 - L1MDa LINE L1 -3907 2633 2521 1910 209 8 6 chr21 22590939 22591303 -12316267 - MLT1A1 LTR MaLR 0 365 1 309 256 72 103 chr21 22591303 22591339 -12316231 - L1MDa LINE L1 -4019 2521 2485 2311 94 0 0 chr21 22591339 22591637 -12315933 - AluSx SINE Alu -14 298 1 309 256 72 103 chr21 22591637 22591684 -12315886 - L1MDa LINE L1 -4055 2485 2445 228 247 140 21 chr21 22592577 22592670 -12314900 + MIR SINE MIR 107 210 -52 1806 174 13 10 chr21 22592808 22593112 -12314458 + AluJo SINE Alu 1 305 -7 2145 139 0 3 chr21 22593384 22593780 -12313790 - AluSx SINE Alu 0 395 1 2498 70 0 13 chr21 22594551 22594864 -12312706 + AluY SINE Alu 1 309 -2 390 324 14 36 chr21 22595135 22595274 -12312296 + MIR3 SINE MIR 40 175 -33 1878 139 25 0 chr21 22595508 22595788 -12311782 - AluJo SINE Alu -25 287 1 337 291 68 0 chr21 22596530 22596633 -12310937 - L2 LINE L2 -5 3267 3158 2570 53 13 0 chr21 22596761 22597065 -12310505 + AluY SINE Alu 1 308 -3 626 178 112 0 chr21 22597242 22597349 -12310221 + FLAM_C SINE Alu 1 119 -24 26 64 0 0 chr21 22597349 22597396 -12310174 + AT_rich Low_complexity Low_complexity 1 47 0 227 316 26 0 chr21 22598093 22598169 -12309401 + L2 LINE L2 3188 3265 -7 288 0 0 0 chr21 22598261 22598293 -12309277 + (CA)n Simple_repeat Simple_repeat 1 32 0 317 214 0 29 chr21 22598293 22598363 -12309207 + L1MC4 LINE L1 6636 6703 -1339 2400 81 0 0 chr21 22598382 22598677 -12308893 + AluY SINE Alu 1 295 -16 379 306 91 5 chr21 22599021 22599207 -12308363 - L2 LINE L2 -239 3033 2832 2236 115 0 0 chr21 22599331 22599626 -12307944 + AluSx SINE Alu 1 295 -17 574 277 103 33 chr21 22600095 22600337 -12307233 - L1ME4a LINE L1 -3 6118 5860 1679 114 0 13 chr21 22601509 22601746 -12305824 - AluJb SINE Alu -2 310 77 182 149 184 115 chr21 22602082 22602169 -12305401 - MIR3 SINE MIR -10 198 106 2080 112 0 0 chr21 22602251 22602518 -12305052 + AluSx SINE Alu 1 267 -45 436 163 35 12 chr21 22603135 22603213 -12304357 + MER67A LTR ERV1 1 80 -463 250 231 88 22 chr21 22603213 22603304 -12304266 + MER67B LTR ERV1 1 97 -564 508 169 39 8 chr21 22603367 22603494 -12304076 + MER67D LTR ERV1 44 179 -335 2443 99 0 0 chr21 22603832 22604134 -12303436 + AluSx SINE Alu 1 302 -10 582 303 53 19 chr21 22604493 22604701 -12302869 + MIR SINE MIR 8 222 -40 402 291 13 46 chr21 22604787 22604938 -12302632 + MIR SINE MIR 1 146 -116 280 217 14 0 chr21 22606084 22606153 -12301417 - MIR SINE MIR -61 147 78 397 167 0 0 chr21 22607544 22607610 -12299960 - MIR SINE MIR -123 139 74 342 216 206 10 chr21 22608383 22608485 -12299085 + MIR SINE MIR 31 152 -110 256 290 56 28 chr21 22608594 22608701 -12298869 - MIR3 SINE MIR -9 199 90 838 160 0 42 chr21 22609867 22610011 -12297559 - FLAM_C SINE Alu -5 138 1 1226 230 48 25 chr21 22610033 22610390 -12297180 + MLT1A1 LTR MaLR 1 365 0 227 286 61 20 chr21 22611002 22611100 -12296470 - L2 LINE L2 -2789 525 424 584 213 24 8 chr21 22611433 22611560 -12296010 - MER5A DNA MER1_type -39 150 22 2211 116 0 7 chr21 22611772 22612075 -12295495 + AluJb SINE Alu 1 301 -11 1677 162 47 7 chr21 22612300 22612578 -12294992 + AluJb SINE Alu 1 289 -23 2261 107 3 3 chr21 22613026 22613326 -12294244 + AluSg SINE Alu 1 300 -10 346 311 78 56 chr21 22615023 22615203 -12292367 - MIR3 SINE MIR -7 201 18 427 287 8 8 chr21 22615352 22615474 -12292096 + L2 LINE L2 3190 3311 -2 1609 119 18 128 chr21 22616537 22616865 -12290705 + AluJb SINE Alu 2 293 -9 231 288 31 69 chr21 22616900 22617014 -12290556 - MER5A DNA MER1_type -2 187 61 1762 165 0 32 chr21 22617014 22617323 -12290247 - AluJo SINE Alu -13 299 1 231 288 31 69 chr21 22617323 22617360 -12290210 - MER5A DNA MER1_type -128 61 24 297 75 0 0 chr21 22617822 22617862 -12289708 + (TTTC)n Simple_repeat Simple_repeat 2 41 0 2334 102 7 0 chr21 22618190 22618493 -12289077 + AluSx SINE Alu 1 305 -7 2251 111 6 16 chr21 22618848 22619163 -12288407 + AluSx SINE Alu 1 312 0 1122 165 75 14 chr21 22620748 22620960 -12286610 - AluJo SINE Alu -3 309 85 219 36 0 0 chr21 22621092 22621120 -12286450 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 495 204 48 0 chr21 22621120 22621223 -12286347 - LTR8A LTR ERV1 -56 671 564 2182 99 19 25 chr21 22622264 22622578 -12284992 + AluSx SINE Alu 1 312 0 324 297 68 8 chr21 22622586 22622704 -12284866 + MER5A DNA MER1_type 63 187 -2 444 274 82 0 chr21 22622864 22622999 -12284571 - MIR SINE MIR -108 154 9 271 77 19 19 chr21 22623201 22623253 -12284317 + (CA)n Simple_repeat Simple_repeat 2 53 0 827 175 106 42 chr21 22623264 22623682 -12283888 - LTR54 LTR ERV1 -2 496 3 577 224 14 21 chr21 22624050 22624193 -12283377 + MLT1J LTR MaLR 1 142 -369 186 296 99 68 chr21 22624579 22624741 -12282829 + MIR SINE MIR 41 207 -55 2368 104 0 0 chr21 22625505 22625803 -12281767 - AluSx SINE Alu -14 298 1 228 0 0 0 chr21 22626456 22626482 -12281088 + MIR SINE MIR 115 140 -122 209 130 0 148 chr21 22626458 22626512 -12281058 + MIR3 SINE MIR 118 163 -45 1999 132 4 0 chr21 22626595 22626912 -12280658 - AluSx SINE Alu 0 319 2 843 208 31 10 chr21 22627226 22627418 -12280152 + MLT1D LTR MaLR 1 196 -309 495 207 18 0 chr21 22627447 22627558 -12280012 + MLT1D LTR MaLR 277 389 -116 2050 148 3 0 chr21 22627598 22627902 -12279668 - AluSx SINE Alu -2 310 6 466 181 7 34 chr21 22627920 22628069 -12279501 + C-rich Low_complexity Low_complexity 4 148 0 282 247 39 0 chr21 22628070 22628147 -12279423 + CT-rich Low_complexity Low_complexity 1 80 0 1059 155 40 6 chr21 22628147 22628321 -12279249 - AluJo SINE Alu -12 300 121 261 211 0 0 chr21 22628321 22628373 -12279197 + MLT1D LTR MaLR 454 505 0 1695 191 30 3 chr21 22628661 22628964 -12278606 - AluSx SINE Alu -1 311 1 238 169 17 34 chr21 22628985 22629044 -12278526 - L1MC1 LINE L1 0 6333 6276 1859 166 10 3 chr21 22629102 22629398 -12278172 - AluJo SINE Alu -14 298 1 401 266 0 0 chr21 22631450 22631529 -12276041 - L2 LINE L2 0 3272 3194 2521 72 0 0 chr21 22631708 22632015 -12275555 - AluY SINE Alu 0 311 5 1216 135 10 14 chr21 22632864 22633071 -12274499 + L1PB4 LINE L1 5772 5977 -179 560 156 11 0 chr21 22633078 22633168 -12274402 + AluSq/x SINE Alu 41 131 -182 1862 121 99 7 chr21 22633174 22633447 -12274123 + AluSx SINE Alu 1 298 -14 650 149 78 65 chr21 22633447 22633601 -12273969 + L1PB4 LINE L1 5999 6154 -2 426 268 132 68 chr21 22633611 22633861 -12273709 + L1MC4a LINE L1 6159 6424 -1384 2221 122 7 0 chr21 22633894 22634188 -12273382 - AluSx SINE Alu -16 296 1 198 112 10 71 chr21 22635413 22635511 -12272059 + (CAAAAA)n Simple_repeat Simple_repeat 6 97 0 226 194 40 48 chr21 22636135 22636259 -12271311 + (CAAA)n Simple_repeat Simple_repeat 3 125 0 190 362 55 16 chr21 22636462 22636589 -12270981 - MIR SINE MIR -3 259 128 1942 149 51 58 chr21 22636725 22637140 -12270430 + LOR1b LTR ERV1 1 412 -49 2022 134 0 24 chr21 22637147 22637445 -12270125 - AluSx SINE Alu -21 291 1 275 266 0 0 chr21 22637447 22637511 -12270059 + (TG)n Simple_repeat Simple_repeat 2 65 0 585 192 54 36 chr21 22637857 22638024 -12269546 - MER5B DNA MER1_type -8 170 1 338 209 54 47 chr21 22638564 22638693 -12268877 + MLT1I LTR MaLR 280 409 0 228 227 107 0 chr21 22638876 22638951 -12268619 - MIR SINE MIR -97 111 29 307 200 0 0 chr21 22639099 22639159 -12268411 + MIR SINE MIR 73 132 -130 216 0 0 0 chr21 22640240 22640264 -12267306 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1467 206 66 39 chr21 22641409 22641773 -12265797 - MLT1A2 LTR MaLR 0 374 1 262 255 20 49 chr21 22642132 22642234 -12265336 + LTR41 LTR ERVL 654 752 -21 2465 110 56 0 chr21 22642585 22642940 -12264630 - THE1C LTR MaLR 0 375 1 2258 104 0 0 chr21 22643619 22643926 -12263644 - AluSx SINE Alu -5 307 1 254 281 0 0 chr21 22643973 22644030 -12263540 + MLT1K LTR MaLR 142 198 -390 408 40 0 0 chr21 22644275 22644325 -12263245 + (CA)n Simple_repeat Simple_repeat 1 50 0 362 273 45 30 chr21 22645577 22645709 -12261861 - MLT1K LTR MaLR -1 587 454 3715 152 6 42 chr21 22645809 22646468 -12261102 + MER41B LTR ERV1 1 635 0 31 0 0 0 chr21 22646676 22646707 -12260863 + AT_rich Low_complexity Low_complexity 1 31 0 240 163 0 0 chr21 22647072 22647115 -12260455 + (ATG)n Simple_repeat Simple_repeat 1 43 0 260 246 0 23 chr21 22647650 22647825 -12259745 + (CCA)n Simple_repeat Simple_repeat 3 173 0 329 360 9 9 chr21 22647940 22648051 -12259519 - MIR SINE MIR -62 146 36 1469 147 29 82 chr21 22648083 22648251 -12259319 - AluJb SINE Alu -22 290 143 1919 110 4 11 chr21 22648251 22648583 -12258987 + AluSg SINE Alu 1 330 0 1469 147 29 82 chr21 22648583 22648719 -12258851 - AluJb SINE Alu -169 143 1 1368 153 54 67 chr21 22649897 22650211 -12257359 - AluJo SINE Alu 0 312 3 1764 154 44 0 chr21 22650363 22650661 -12256909 + AluJo SINE Alu 1 311 -1 1872 133 23 3 chr21 22650904 22651205 -12256365 + AluSx SINE Alu 2 308 -4 1073 110 0 0 chr21 22651229 22651383 -12256187 + AluSg/x SINE Alu 154 307 -3 323 303 92 81 chr21 22651383 22651839 -12255731 + L1MC4a LINE L1 4751 5211 -935 513 237 46 12 chr21 22651874 22652047 -12255523 + L1MC4a LINE L1 5296 5474 -2334 887 289 60 10 chr21 22652297 22652595 -12254975 + L1MC4a LINE L1 5531 5843 -1965 230 216 0 125 chr21 22654821 22654845 -12252725 + L1P4 LINE L1 5749 5774 -392 2892 153 43 5 chr21 22654845 22655406 -12252164 + L1MB8 LINE L1 5596 6177 -1 230 216 0 125 chr21 22655406 22655418 -12252152 + L1P4 LINE L1 5774 5786 -380 2225 92 0 3 chr21 22655418 22655712 -12251858 + AluSp SINE Alu 1 293 -20 230 216 0 125 chr21 22655712 22655762 -12251808 + L1P4 LINE L1 5786 5825 -341 431 295 107 43 chr21 22655762 22655996 -12251574 + L1MC4a LINE L1 5824 6072 -1736 430 242 108 0 chr21 22656243 22656363 -12251207 + MIR3 SINE MIR 30 162 -46 432 221 86 21 chr21 22656727 22656867 -12250703 - MIR SINE MIR -80 182 34 449 168 75 19 chr21 22656996 22657103 -12250467 + L1ME3A LINE L1 5941 6053 -117 864 168 54 0 chr21 22657215 22657382 -12250188 - AluSg/x SINE Alu -1 309 134 240 420 0 9 chr21 22658372 22658484 -12249086 + MIR3 SINE MIR 6 116 -92 210 37 0 0 chr21 22658488 22658515 -12249055 + (A)n Simple_repeat Simple_repeat 1 27 0 2004 129 10 0 chr21 22658999 22659308 -12248262 - AluSx SINE Alu 0 312 1 481 314 46 16 chr21 22660118 22660312 -12247258 - L2 LINE L2 -607 2707 2508 1314 235 83 41 chr21 22660327 22660737 -12246833 + MLT1C LTR MaLR 6 438 -29 2831 180 19 2 chr21 22660737 22661215 -12246355 - MER66B LTR ERV1 0 486 1 1314 235 83 41 chr21 22661215 22661247 -12246323 + MLT1C LTR MaLR 438 467 0 458 269 36 73 chr21 22661350 22661625 -12245945 - L2 LINE L2 -4 3309 3045 698 226 81 47 chr21 22661761 22661996 -12245574 + L1MB5 LINE L1 5367 5609 -569 839 181 0 0 chr21 22662000 22662138 -12245432 + FLAM_C SINE Alu 3 140 -3 1982 190 55 21 chr21 22662153 22662589 -12244981 + L1MB5 LINE L1 5599 6049 -125 232 244 13 51 chr21 22662631 22662709 -12244861 - MIR SINE MIR -5 257 183 1463 99 9 5 chr21 22663000 22663211 -12244359 + AluSg SINE Alu 1 212 -98 2389 73 0 10 chr21 22663212 22663526 -12244044 + AluY SINE Alu 1 311 0 2541 190 17 13 chr21 22663527 22664097 -12243473 + L1ME1 LINE L1 5202 5771 -395 1217 212 33 7 chr21 22664129 22664402 -12243168 + L1ME1 LINE L1 5848 6127 -39 1101 302 75 77 chr21 22664432 22664953 -12242617 + L1M4 LINE L1 3039 3560 -2586 7270 53 12 6 chr21 22664953 22666550 -12241020 - L1PA5 LINE L1 -1 6153 4551 1101 302 75 77 chr21 22666550 22666770 -12240800 + L1M4 LINE L1 3560 3779 -2367 379 291 117 60 chr21 22666964 22667229 -12240341 + L1M4 LINE L1 4164 4443 -1703 1974 110 7 3 chr21 22667666 22667969 -12239601 + AluSx SINE Alu 1 304 0 2070 112 0 0 chr21 22668428 22668714 -12238856 + AluSx SINE Alu 1 286 -26 216 97 0 0 chr21 22668717 22668748 -12238822 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 329 293 73 43 chr21 22668749 22669189 -12238381 + L1M4 LINE L1 4789 5241 -905 873 116 0 68 chr21 22669263 22669409 -12238161 + AluSx SINE Alu 48 183 -129 602 121 0 0 chr21 22669409 22669492 -12238078 + MLT2A1 LTR ERVL 312 394 -50 303 93 0 0 chr21 22669494 22669537 -12238033 + (TG)n Simple_repeat Simple_repeat 2 44 0 404 294 0 0 chr21 22669552 22669644 -12237926 - L1MC4 LINE L1 -1336 6706 6615 356 333 0 0 chr21 22669585 22669675 -12237895 + L1MC4 LINE L1 6614 6703 -1339 333 240 93 0 chr21 22669656 22669731 -12237839 - L1MC4 LINE L1 -1340 6702 6621 407 91 0 0 chr21 22669731 22669786 -12237784 + MLT2A1 LTR ERVL 390 444 0 3931 141 14 6 chr21 22669791 22670422 -12237148 + L1MC1 LINE L1 5448 6083 -250 3091 152 19 24 chr21 22670422 22670785 -12236785 + MER6A DNA MER2_type 1 362 -503 2008 144 0 0 chr21 22670785 22671097 -12236473 - AluSx SINE Alu 0 312 1 3091 152 19 24 chr21 22671097 22671267 -12236303 + MER6A DNA MER2_type 362 531 -74 816 210 72 46 chr21 22671296 22671558 -12236012 + MLT1C LTR MaLR 191 459 -8 2231 219 65 10 chr21 22672439 22672699 -12234871 + LTR53 LTR ERVL 2 246 -273 2708 102 8 3 chr21 22672699 22673072 -12234498 - THE1C LTR MaLR 0 375 1 2231 219 65 10 chr21 22673072 22673300 -12234270 + LTR53 LTR ERVL 246 517 -2 1617 121 0 161 chr21 22674004 22674138 -12233432 + AluJo SINE Alu 2 45 -257 1922 99 3 25 chr21 22674138 22674421 -12233149 + AluSq SINE Alu 1 277 -36 1617 121 0 161 chr21 22674421 22674641 -12232929 + AluJo SINE Alu 45 299 -3 497 127 17 42 chr21 22675036 22675154 -12232416 + T-rich Low_complexity Low_complexity 3 117 0 2195 117 0 0 chr21 22675156 22675464 -12232106 - AluSx SINE Alu 0 312 5 315 339 46 0 chr21 22675548 22675657 -12231913 + Charlie8 DNA MER1_type 12 125 -2292 1318 214 93 24 chr21 22677860 22678251 -12229319 - MLT1C LTR MaLR -16 451 18 314 172 65 43 chr21 22678687 22678780 -12228790 - MLT1J LTR MaLR 0 511 417 672 257 100 24 chr21 22678878 22679127 -12228443 - MLT1J LTR MaLR -235 276 9 252 0 0 0 chr21 22680914 22680942 -12226628 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 1705 173 0 3 chr21 22681081 22681376 -12226194 - AluJb SINE Alu -8 304 11 291 370 52 48 chr21 22682694 22682924 -12224646 + MIR SINE MIR 20 250 -12 713 214 51 67 chr21 22683667 22683710 -12223860 - MER5A DNA MER1_type -14 175 133 1964 107 0 0 chr21 22683710 22683980 -12223590 + AluSx SINE Alu 22 291 -21 713 214 51 67 chr21 22683980 22684114 -12223456 - MER5A DNA MER1_type -56 133 1 787 230 6 12 chr21 22684114 22684264 -12223306 - MER5B DNA MER1_type -29 149 1 2138 88 20 0 chr21 22684968 22685263 -12222307 + L1PA10 LINE L1 5868 6168 0 221 233 82 41 chr21 22687243 22687316 -12220254 + MIR SINE MIR 88 163 -99 1959 137 17 13 chr21 22687379 22687679 -12219891 - AluSx SINE Alu -11 301 1 213 125 25 75 chr21 22688112 22688192 -12219378 + (TTTA)n Simple_repeat Simple_repeat 3 78 0 237 65 0 0 chr21 22688213 22688244 -12219326 + (TG)n Simple_repeat Simple_repeat 2 32 0 512 274 38 52 chr21 22688315 22688527 -12219043 + L2 LINE L2 3098 3306 -7 2350 87 0 7 chr21 22690778 22691087 -12216483 - AluSx SINE Alu -3 309 3 2241 112 3 3 chr21 22691303 22691608 -12215962 + AluSq SINE Alu 1 305 -8 2502 112 16 16 chr21 22691857 22692232 -12215338 - THE1C LTR MaLR 0 375 1 203 273 18 0 chr21 22692735 22692790 -12214780 + CT-rich Low_complexity Low_complexity 103 158 0 1486 172 46 14 chr21 22693295 22693579 -12213991 - AluJo SINE Alu -19 293 1 4448 233 47 32 chr21 22697800 22699382 -12208188 + L1PA12 LINE L1 2 2658 -4926 2494 95 45 0 chr21 22699381 22699739 -12207831 + L1P4 LINE L1 5313 5686 -488 2893 80 63 2 chr21 22699770 22700183 -12207387 + L1PA11 LINE L1 5643 6080 -94 26 83 0 28 chr21 22700442 22700550 -12207020 + AT_rich Low_complexity Low_complexity 1 105 0 238 330 28 0 chr21 22700874 22701053 -12206517 + L1M4 LINE L1 2110 2293 -3853 679 292 37 46 chr21 22701298 22701924 -12205646 + L1M4 LINE L1 2529 3148 -2998 749 284 56 34 chr21 22702072 22702640 -12204930 + L1MC3 LINE L1 1069 1649 -4747 9561 244 37 14 chr21 22702847 22704520 -12203050 + L1MC3 LINE L1 2614 4379 -1836 2124 161 5 45 chr21 22704520 22704924 -12202646 - MLT1B LTR MaLR -2 388 1 9561 244 37 14 chr21 22704924 22706042 -12201528 + L1MC3 LINE L1 4379 5470 -745 713 195 8 0 chr21 22706066 22706194 -12201376 + FAM SINE Alu 30 158 -27 195 100 0 0 chr21 22706195 22706225 -12201345 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 8488 197 50 38 chr21 22706227 22706768 -12200802 + L1MC3 LINE L1 5475 6008 -1846 2921 39 14 0 chr21 22706768 22707109 -12200461 + L1PA5 LINE L1 5786 6145 -9 8488 197 50 38 chr21 22707109 22708915 -12198655 + L1MC3 LINE L1 6008 7780 -74 1713 62 0 9 chr21 22708915 22709140 -12198430 + L1PA5 LINE L1 5931 6153 -1 8488 197 50 38 chr21 22709140 22709216 -12198354 + L1MC3 LINE L1 7780 7854 0 594 265 48 86 chr21 22709220 22709556 -12198014 + L1ME3A LINE L1 5817 6139 -31 21 0 0 0 chr21 22709638 22709659 -12197911 + AT_rich Low_complexity Low_complexity 1 21 0 1082 82 0 7 chr21 22709661 22709796 -12197774 + AluSq/x SINE Alu 3 136 -177 2206 70 0 18 chr21 22709796 22709917 -12197653 + AluSx SINE Alu 17 139 -175 2176 102 0 3 chr21 22709917 22710200 -12197370 + AluSg SINE Alu 17 298 -12 2206 70 0 18 chr21 22710200 22710381 -12197189 + AluSx SINE Alu 139 314 0 2008 139 38 0 chr21 22710600 22710887 -12196683 - AluSx SINE Alu -14 298 1 2552 25 0 0 chr21 22711289 22711567 -12196003 + AluYb8 SINE Alu 35 312 -6 634 284 46 83 chr21 22711716 22712037 -12195533 - L2 LINE L2 -703 2611 2314 1810 185 0 10 chr21 22712037 22712339 -12195231 + AluJo SINE Alu 1 299 -13 634 284 46 83 chr21 22712339 22712520 -12195050 - L2 LINE L2 -1000 2314 2128 603 185 69 8 chr21 22712552 22712682 -12194888 - MER89 LTR ERV1 -5 554 417 1270 262 56 25 chr21 22712687 22713118 -12194452 - LTR34 LTR ERV1 -4 695 252 290 151 23 151 chr21 22713139 22713225 -12194345 - MER4A LTR ERV1 -478 186 112 490 139 93 19 chr21 22713271 22713379 -12194191 - MER4C LTR ERV1 -349 116 1 2202 196 19 7 chr21 22713379 22713791 -12193779 - MER89 LTR ERV1 -140 419 3 392 276 32 6 chr21 22713794 22713950 -12193620 - L2 LINE L2 -1216 2098 1939 4679 108 13 14 chr21 22714547 22715253 -12192317 + L1MA2 LINE L1 5600 6304 0 2281 96 14 0 chr21 22715472 22715765 -12191805 + AluSq SINE Alu 1 297 -16 294 102 41 0 chr21 22716082 22716131 -12191439 - MER5B DNA MER1_type -2 176 126 456 161 25 0 chr21 22716505 22716586 -12190984 + MER34 LTR ERV1 12 94 -448 326 228 94 78 chr21 22716813 22716993 -12190577 + MER34B LTR ERV1 366 548 -17 1524 136 38 34 chr21 22717027 22717098 -12190472 - LTR39 LTR ERV1 -98 696 627 819 39 0 102 chr21 22717098 22717225 -12190345 - L1PA5 LINE L1 0 6154 6041 2258 122 0 0 chr21 22717231 22717543 -12190027 - AluSx SINE Alu 0 312 1 1524 136 38 34 chr21 22717543 22717893 -12189677 - LTR39 LTR ERV1 -171 623 231 326 264 160 28 chr21 22718047 22718153 -12189417 - LTR28 LTR ERV1 -157 1598 1479 1043 253 65 93 chr21 22718133 22718917 -12188653 - LTR28 LTR ERV1 -291 729 441 1619 179 12 38 chr21 22718935 22719254 -12188316 + AluJb SINE Alu 1 311 -1 1416 104 45 9 chr21 22719254 22719476 -12188094 - LTR39 LTR ERV1 -564 230 1 1209 204 87 14 chr21 22719667 22719963 -12187607 + MER67C LTR ERV1 1 508 -232 794 201 59 15 chr21 22720001 22720205 -12187365 + MER67C LTR ERV1 498 710 0 788 158 49 101 chr21 22720356 22720603 -12186967 - LTR23 LTR ERV1 0 437 204 627 210 36 7 chr21 22720630 22720768 -12186802 - LTR56 LTR ERV1 -303 142 1 2221 109 7 0 chr21 22720903 22721025 -12186545 + AluSg SINE Alu 1 121 -189 189 0 0 0 chr21 22721025 22721046 -12186524 + (CA)n Simple_repeat Simple_repeat 2 22 0 2221 109 7 0 chr21 22721046 22721227 -12186343 + AluSg SINE Alu 121 306 -4 307 277 27 0 chr21 22721544 22721656 -12185914 - L1MC5 LINE L1 -520 7441 7327 3172 77 29 25 chr21 22721688 22722130 -12185440 + MLT2A1 LTR ERVL 1 444 0 458 314 68 32 chr21 22722135 22722387 -12185183 - L1MC4a LINE L1 -458 7350 7090 1437 250 44 10 chr21 22722393 22722805 -12184765 - L1MC4 LINE L1 -894 7148 6723 7786 156 17 6 chr21 22722873 22723722 -12183848 - L1PB1 LINE L1 0 6867 6028 198 0 0 0 chr21 22723722 22723744 -12183826 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 7786 156 17 6 chr21 22723744 22725261 -12182309 - L1PB1 LINE L1 -839 6028 4490 16793 163 21 11 chr21 22725255 22726139 -12181431 - L1PB1 LINE L1 -2303 4559 3686 2347 84 3 0 chr21 22726139 22726435 -12181135 - AluY SINE Alu -14 297 1 16793 163 21 11 chr21 22726435 22730025 -12177545 - L1PB1 LINE L1 -3176 3686 1 519 111 12 25 chr21 22730033 22730114 -12177456 - AluJo SINE Alu -170 142 63 34 65 0 0 chr21 22730129 22730191 -12177379 + AT_rich Low_complexity Low_complexity 1 62 0 209 237 17 17 chr21 22730232 22730291 -12177279 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 494 246 78 93 chr21 22730646 22730967 -12176603 - L1MC4a LINE L1 -1749 6059 5744 225 274 32 0 chr21 22732336 22732398 -12175172 + L2 LINE L2 3193 3256 -16 192 77 0 0 chr21 22732402 22732428 -12175142 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 4424 194 38 10 chr21 22732969 22733792 -12173778 - MER21B LTR ERV1 -17 846 1 3872 177 40 24 chr21 22734360 22735158 -12172412 + L1MB8 LINE L1 5367 6177 -1 2336 97 0 3 chr21 22735198 22735497 -12172073 - AluSx SINE Alu -14 298 1 292 263 53 0 chr21 22736699 22736775 -12170795 - L2 LINE L2 -4 3309 3230 1698 165 0 3 chr21 22738093 22738384 -12169186 - AluJb SINE Alu -16 296 7 180 0 0 0 chr21 22738405 22738425 -12169145 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2041 108 0 0 chr21 22738425 22738703 -12168867 - AluSx SINE Alu -32 280 3 1518 189 91 147 chr21 22739109 22739503 -12168067 - MLT1E1 LTR MaLR -44 610 196 2332 76 0 16 chr21 22739503 22739819 -12167751 - AluY SINE Alu 0 311 1 1229 109 16 6 chr21 22739821 22740004 -12167566 - L1PA13 LINE L1 -5 6158 5974 1518 189 91 147 chr21 22740004 22740252 -12167318 - MLT1E1 LTR MaLR -459 195 1 446 283 102 9 chr21 22740406 22740675 -12166895 + L2 LINE L2 2783 3068 -245 675 114 123 0 chr21 22741376 22741490 -12166080 + MSTD LTR MaLR 1 128 -268 602 212 53 0 chr21 22741557 22741689 -12165881 + MSTD LTR MaLR 234 372 -24 1165 216 70 33 chr21 22742546 22742875 -12164695 + MER2 DNA MER2_type 2 342 -2 216 97 0 0 chr21 22743493 22743524 -12164046 + (TC)n Simple_repeat Simple_repeat 2 32 0 561 94 0 0 chr21 22743666 22743751 -12163819 + (TCCA)n Simple_repeat Simple_repeat 1 85 0 257 304 74 34 chr21 22749055 22749203 -12158367 + MIR SINE MIR 20 173 -89 2313 88 3 3 chr21 22749452 22749759 -12157811 - AluSc SINE Alu -2 307 1 2091 103 20 0 chr21 22753847 22754139 -12153431 - AluSx SINE Alu -14 298 1 1050 31 78 0 chr21 22757750 22757879 -12149691 + MER85 DNA T2_type 1 139 0 209 238 0 0 chr21 22757917 22757959 -12149611 + A-rich Low_complexity Low_complexity 1 42 0 2913 50 3 17 chr21 22759811 22760171 -12147399 + THE1A LTR MaLR 1 355 0 2153 59 15 0 chr21 22760679 22760951 -12146619 - AluSq SINE Alu -3 310 35 2568 140 83 24 chr21 22761967 22762425 -12145145 - MER31A LTR ERV1 0 485 1 2498 40 0 0 chr21 22763026 22763322 -12144248 - AluY SINE Alu -15 296 1 1098 228 102 48 chr21 22763585 22764239 -12143331 - L2 LINE L2 -3 3310 2623 207 167 0 0 chr21 22765961 22766003 -12141567 + A-rich Low_complexity Low_complexity 1 42 0 189 0 0 0 chr21 22767889 22767910 -12139660 + (TG)n Simple_repeat Simple_repeat 2 22 0 322 266 64 9 chr21 22768641 22768750 -12138820 - LTR16A LTR ERVL -91 359 245 435 271 64 43 chr21 22769202 22769483 -12138087 + L1ME4a LINE L1 5619 5905 -216 2232 92 0 0 chr21 22770767 22771061 -12136509 + AluSg SINE Alu 1 294 -16 2278 91 0 0 chr21 22771715 22772022 -12135548 + AluY SINE Alu 1 307 -4 2048 238 105 13 chr21 22772229 22772762 -12134808 + MLT1G1 LTR MaLR 14 595 0 825 264 74 8 chr21 22772948 22773190 -12134380 + MIR SINE MIR 4 261 -1 1157 189 68 7 chr21 22773223 22773670 -12133900 + MLT1D LTR MaLR 6 505 0 225 222 153 0 chr21 22774039 22774111 -12133459 + MIR SINE MIR 102 184 -78 955 210 72 5 chr21 22774317 22774671 -12132899 + MLT1E2 LTR MaLR 189 626 0 305 183 2 2 chr21 22774689 22774753 -12132817 - FLAM SINE Alu 0 133 79 534 168 80 18 chr21 22777534 22777595 -12129975 + MLT1A2 LTR MaLR 5 61 -329 1937 172 44 26 chr21 22777595 22777984 -12129586 + MSTD LTR MaLR 1 396 0 534 168 80 18 chr21 22777984 22778035 -12129535 + MLT1A2 LTR MaLR 61 124 -266 864 220 0 6 chr21 22778057 22778225 -12129345 + MLT1A2 LTR MaLR 208 374 0 21 0 0 0 chr21 22778553 22778574 -12128996 + AT_rich Low_complexity Low_complexity 1 21 0 239 0 32 0 chr21 22779858 22779889 -12127681 + (TCCA)n Simple_repeat Simple_repeat 1 32 0 2100 167 23 10 chr21 22780379 22780763 -12126807 + MLT1B LTR MaLR 1 389 -1 383 307 175 0 chr21 22782286 22782423 -12125147 + MER5A DNA MER1_type 29 189 0 26 30 0 0 chr21 22783395 22783428 -12124142 + AT_rich Low_complexity Low_complexity 1 33 0 2413 115 19 19 chr21 22784755 22785119 -12122451 - THE1B LTR MaLR 0 364 1 721 223 173 16 chr21 22785168 22785486 -12122084 + L1MC5 LINE L1 7414 7781 -180 866 192 12 6 chr21 22785493 22785654 -12121916 + AluJb SINE Alu 141 302 -10 28 0 0 0 chr21 22785654 22785682 -12121888 + AT_rich Low_complexity Low_complexity 1 28 0 2373 82 0 20 chr21 22785843 22786187 -12121383 + AluY SINE Alu 1 311 0 2003 139 0 7 chr21 22786204 22786523 -12121047 + AluJb SINE Alu 1 317 0 2397 88 3 0 chr21 22786994 22787291 -12120279 + AluSx SINE Alu 1 298 -14 268 298 77 0 chr21 22787889 22787993 -12119577 - MIR SINE MIR -34 228 117 264 325 52 52 chr21 22789753 22789907 -12117663 - MIR SINE MIR -53 209 56 2053 122 26 34 chr21 22790950 22791328 -12116242 + THE1C LTR MaLR 1 375 0 1891 109 73 54 chr21 22793647 22793689 -12113881 - THE1C LTR MaLR 0 375 335 2018 121 3 29 chr21 22793689 22793833 -12113737 + AluSx SINE Alu 1 147 -165 225 0 0 0 chr21 22793833 22793858 -12113712 + (TA)n Simple_repeat Simple_repeat 1 25 0 234 0 0 0 chr21 22793857 22793883 -12113687 + (GA)n Simple_repeat Simple_repeat 2 27 0 2018 121 3 29 chr21 22793858 22794045 -12113525 + AluSx SINE Alu 147 299 -13 1891 109 73 54 chr21 22794045 22794370 -12113200 - THE1C LTR MaLR -40 335 1 22 35 0 0 chr21 22794784 22794813 -12112757 + AT_rich Low_complexity Low_complexity 1 29 0 1379 172 54 50 chr21 22794980 22795277 -12112293 + AluJb SINE Alu 1 298 -14 238 314 70 26 chr21 22796149 22796305 -12111265 + L3 LINE CR1 1390 1552 -25 627 254 23 17 chr21 22796390 22796567 -12111003 - MER115 DNA AcHobo -40 653 476 2390 166 29 2 chr21 22796695 22797110 -12110460 - MSTB LTR MaLR 0 426 1 1389 87 0 11 chr21 22797276 22797460 -12110110 + AluY SINE Alu 1 182 -129 904 91 0 0 chr21 22797520 22797641 -12109929 + AluSg/x SINE Alu 184 304 -6 2464 99 11 8 chr21 22798872 22799226 -12108344 - THE1A LTR MaLR 0 355 1 307 236 109 9 chr21 22799761 22799871 -12107699 - MIR SINE MIR -18 244 124 24 0 0 0 chr21 22800921 22800945 -12106625 + AT_rich Low_complexity Low_complexity 1 24 0 2398 84 3 0 chr21 22801074 22801370 -12106200 + AluSp SINE Alu 1 297 -16 21 36 0 0 chr21 22801530 22801558 -12106012 + AT_rich Low_complexity Low_complexity 1 28 0 1850 148 32 0 chr21 22801629 22801907 -12105663 - AluJb SINE Alu -22 290 4 180 167 56 0 chr21 22802425 22802461 -12105109 + MIR SINE MIR 110 147 -61 207 278 19 0 chr21 22802657 22802711 -12104859 + MIR3 SINE MIR 151 205 -3 2072 124 162 11 chr21 22802728 22803099 -12104471 - MSTA LTR MaLR 0 428 2 788 304 65 22 chr21 22804159 22804574 -12102996 + HAL1 LINE L1 1374 1806 -701 946 185 0 0 chr21 22805597 22805748 -12101822 - AluJb SINE Alu -24 288 138 250 111 259 0 chr21 22805918 22805972 -12101598 - MIR SINE MIR -71 191 124 185 154 58 58 chr21 22806197 22806249 -12101321 + MIR3 SINE MIR 156 207 -1 272 268 0 0 chr21 22806929 22807000 -12100570 - L2 LINE L2 0 3272 3202 203 300 101 75 chr21 22807115 22807378 -12100192 - L2 LINE L2 -344 2970 2691 1997 140 0 3 chr21 22807378 22807686 -12099884 + AluJb SINE Alu 1 307 0 203 300 101 75 chr21 22807686 22807808 -12099762 - L2 LINE L2 -623 2691 2574 182 258 34 45 chr21 22808934 22809023 -12098547 + MIR SINE MIR 49 136 -72 201 104 62 21 chr21 22809026 22809074 -12098496 + (CAAA)n Simple_repeat Simple_repeat 3 52 0 1785 135 0 29 chr21 22809175 22809456 -12098114 + AluJb SINE Alu 1 273 -39 329 265 0 12 chr21 22809512 22809595 -12097975 - MER5B DNA MER1_type -96 82 1 198 233 52 86 chr21 22809925 22810041 -12097529 + MIR SINE MIR 69 180 -82 203 208 0 21 chr21 22811567 22811615 -12095955 + GA-rich Low_complexity Low_complexity 2 48 0 595 298 98 50 chr21 22812225 22812665 -12094905 - L2 LINE L2 0 3313 2853 416 319 66 8 chr21 22812743 22813000 -12094570 - L2 LINE L2 -570 2744 2473 1833 138 4 84 chr21 22813137 22813241 -12094329 + MLT1B LTR MaLR 4 115 -275 1862 103 16 0 chr21 22813241 22813494 -12094076 - AluSq SINE Alu -11 302 46 1833 138 4 84 chr21 22813494 22813822 -12093748 + MLT1B LTR MaLR 115 388 -2 231 36 0 0 chr21 22813953 22813981 -12093589 + (CA)n Simple_repeat Simple_repeat 1 28 0 2095 261 65 36 chr21 22815409 22815524 -12092046 + L1M4 LINE L1 2316 2426 -4114 2617 59 0 0 chr21 22815524 22815827 -12091743 + AluY SINE Alu 1 303 -8 2095 261 65 36 chr21 22815827 22816733 -12090837 + L1M4 LINE L1 2426 3522 -3018 2261 124 0 3 chr21 22816733 22817047 -12090523 + AluSq SINE Alu 1 313 0 2095 261 65 36 chr21 22817047 22817085 -12090485 + L1M4 LINE L1 3522 3557 -2983 1893 190 40 40 chr21 22817807 22818212 -12089358 + MLT2D LTR ERVL 1 405 -9 1120 182 68 59 chr21 22818224 22818531 -12089039 + L1ME3A LINE L1 5855 6164 -6 3862 148 51 12 chr21 22818550 22819241 -12088329 + L1MB2 LINE L1 5447 6164 -7 1749 173 132 73 chr21 22819570 22820061 -12087509 + MLT2B1 LTR ERVL 1 520 0 273 291 157 12 chr21 22820091 22820263 -12087307 + L2 LINE L2 2854 3050 -263 315 261 183 0 chr21 22820356 22820471 -12087099 + L2 LINE L2 3137 3272 0 392 284 50 50 chr21 22821198 22821416 -12086154 - L2 LINE L2 -12 3301 3084 250 159 0 0 chr21 22823306 22823350 -12084220 - MER116 DNA Mariner -36 44 1 236 248 55 28 chr21 22824179 22824288 -12083282 + L1M LINE L1 5298 5410 -744 2216 121 0 0 chr21 22824333 22824639 -12082931 + AluSc SINE Alu 1 306 -3 779 256 8 34 chr21 22824960 22825194 -12082376 + MIR SINE MIR 2 229 -33 250 253 46 23 chr21 22827061 22827148 -12080422 + MIR SINE MIR 31 119 -89 278 174 130 0 chr21 22827257 22827326 -12080244 - Charlie5 DNA MER1_type -2503 109 32 784 233 6 0 chr21 22827324 22827483 -12080087 - MER3 DNA MER1_type -82 127 15 326 283 65 14 chr21 22827803 22827941 -12079629 + L1M4 LINE L1 4589 4733 -1807 1013 291 59 33 chr21 22828827 22829380 -12078190 + L1M4 LINE L1 5648 6218 -360 1211 105 12 0 chr21 22829384 22829546 -12078024 + AluSg/x SINE Alu 129 292 -18 261 282 0 39 chr21 22830537 22830615 -12076955 + G-rich Low_complexity Low_complexity 2 76 0 331 244 0 0 chr21 22831193 22831271 -12076299 - L2 LINE L2 -13 3300 3223 852 238 5 10 chr21 22831307 22831509 -12076061 - MIR SINE MIR -16 246 46 2677 56 0 0 chr21 22831599 22831903 -12075667 + AluY SINE Alu 1 304 -7 374 212 110 25 chr21 22833760 22833878 -12073692 + MIR SINE MIR 122 249 -13 2039 106 20 3 chr21 22834201 22834494 -12073076 - AluSq SINE Alu -15 298 1 208 234 43 0 chr21 22834764 22834811 -12072759 + L2 LINE L2 3151 3199 -73 183 80 0 0 chr21 22834933 22834958 -12072612 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 3289 81 22 31 chr21 22835083 22835540 -12072030 + MLT2A2 LTR ERVL 1 453 0 2280 93 0 0 chr21 22835702 22836003 -12071567 + AluSg SINE Alu 1 301 -9 605 259 65 24 chr21 22836005 22836175 -12071395 + MIR SINE MIR 15 191 -71 2123 106 149 0 chr21 22836182 22836511 -12071059 + MER83B LTR ERV1 1 378 0 1420 197 65 57 chr21 22836627 22837012 -12070558 + MLT1B LTR MaLR 1 388 -2 1734 118 82 4 chr21 22837460 22837730 -12069840 - AluSg SINE Alu -19 291 1 988 219 121 19 chr21 22837826 22837845 -12069725 + MLT1F LTR MaLR 1 17 -525 3429 121 62 4 chr21 22837845 22838343 -12069227 + MER1A DNA MER1_type 1 527 0 988 219 121 19 chr21 22838343 22838805 -12068765 + MLT1F LTR MaLR 17 542 0 617 184 133 6 chr21 22840678 22840836 -12066734 - MER5B DNA MER1_type 0 178 1 346 242 42 0 chr21 22842137 22842257 -12065313 + L2 LINE L2 2545 2669 -645 294 228 21 103 chr21 22842568 22842713 -12064857 + LTR33 LTR ERVL 12 144 -377 587 247 108 43 chr21 22842951 22843182 -12064388 + L2 LINE L2 3050 3295 -18 796 258 54 48 chr21 22843211 22843506 -12064064 + L2 LINE L2 3013 3309 -4 22 0 0 0 chr21 22844718 22844740 -12062830 + GC_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr21 22844993 22845046 -12062524 + GC_rich Low_complexity Low_complexity 1 53 0 231 67 0 0 chr21 22846393 22846423 -12061147 + L1MB7 LINE L1 5504 5533 -651 407 182 114 0 chr21 22846423 22846511 -12061059 + MER4A LTR ERV1 1 98 -566 357 171 19 5 chr21 22846511 22846641 -12060929 + MER4A LTR ERV1 261 441 -223 1523 145 9 0 chr21 22846672 22846900 -12060670 + MER4B LTR ERV1 381 610 0 3684 140 23 20 chr21 22846900 22847037 -12060533 + L1MB7 LINE L1 5530 5665 -519 2100 111 3 3 chr21 22847037 22847344 -12060226 + AluSp SINE Alu 1 307 -6 3684 140 23 20 chr21 22847344 22847858 -12059712 + L1MB7 LINE L1 5665 6183 -1 2116 113 0 0 chr21 22848586 22848896 -12058674 + AluSx SINE Alu 1 310 -2 309 246 101 36 chr21 22850425 22850563 -12057007 + MIR SINE MIR 24 170 -92 1368 138 64 9 chr21 22850978 22851196 -12056374 + MER30 DNA MER1_type 1 230 0 2258 136 3 51 chr21 22851484 22851859 -12055711 + THE1B LTR MaLR 8 364 0 1977 267 95 103 chr21 22851861 22852632 -12054938 - L2 LINE L2 -33 3280 2504 478 175 93 0 chr21 22852632 22852729 -12054841 - MLT1D LTR MaLR -1 504 399 1977 267 95 103 chr21 22852729 22852783 -12054787 - L2 LINE L2 -809 2504 2451 2083 112 0 16 chr21 22852783 22853086 -12054484 - AluSx SINE Alu -14 298 1 1977 267 95 103 chr21 22853086 22854200 -12053370 - L2 LINE L2 -862 2451 1264 264 272 26 9 chr21 22854249 22854363 -12053207 + (TA)n Simple_repeat Simple_repeat 2 117 0 330 272 88 9 chr21 22854679 22854793 -12052777 + L2 LINE L2 3191 3313 0 1577 202 55 11 chr21 22855001 22855382 -12052188 - Charlie7 DNA MER1_type -455 2157 1760 270 154 0 0 chr21 22855555 22855594 -12051976 - L1PA6 LINE L1 -14 6140 6102 22 0 0 0 chr21 22855600 22855622 -12051948 + AT_rich Low_complexity Low_complexity 1 22 0 580 301 47 15 chr21 22855670 22856009 -12051561 - Charlie7 DNA MER1_type -2193 419 70 282 234 0 47 chr21 22856773 22856837 -12050733 + L2 LINE L2 3137 3197 -75 808 181 0 25 chr21 22856921 22857081 -12050489 - FRAM SINE Alu -20 156 1 222 128 0 0 chr21 22857137 22857176 -12050394 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 1260 166 18 61 chr21 22857553 22857754 -12049816 - AluJb SINE Alu 0 322 114 240 35 0 0 chr21 22857754 22857783 -12049787 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1805 137 4 0 chr21 22857783 22858061 -12049509 - AluSc SINE Alu -30 279 1 1260 166 18 61 chr21 22858061 22858175 -12049395 - AluJb SINE Alu -206 116 18 396 327 81 20 chr21 22858376 22858624 -12048946 - HAL1 LINE L1 -1401 1106 844 1159 105 0 0 chr21 22858792 22858945 -12048625 - THE1B LTR MaLR -21 343 191 244 252 14 21 chr21 22859038 22859181 -12048389 + (TATG)n Simple_repeat Simple_repeat 1 142 0 1677 126 28 16 chr21 22859198 22859445 -12048125 - THE1B LTR MaLR -114 250 1 3409 184 46 15 chr21 22859824 22860547 -12047023 + L1MC2 LINE L1 5600 6344 0 714 265 71 25 chr21 22861691 22861929 -12045641 - MLT1C LTR MaLR -3 464 216 201 169 119 17 chr21 22862286 22862345 -12045225 - MER5A DNA MER1_type -118 71 7 1683 190 41 104 chr21 22862906 22863201 -12044369 - MLT1D LTR MaLR 0 505 254 2234 93 0 0 chr21 22863201 22863503 -12044067 - AluSx SINE Alu -10 302 1 1683 190 41 104 chr21 22863503 22863718 -12043852 - MLT1D LTR MaLR -251 254 27 2256 204 88 124 chr21 22863732 22863808 -12043762 - MER21A LTR ERV1 -7 924 847 1897 122 18 18 chr21 22863808 22864094 -12043476 + AluSx SINE Alu 6 291 -21 2256 204 88 124 chr21 22864094 22864699 -12042871 - MER21A LTR ERV1 -84 847 286 1998 106 0 0 chr21 22864699 22864972 -12042598 + AluSc SINE Alu 1 273 -36 2256 204 88 124 chr21 22864972 22865248 -12042322 - MER21A LTR ERV1 -645 286 1 369 254 108 0 chr21 22865579 22865709 -12041861 - LTR16C LTR ERVL -199 292 149 364 136 0 30 chr21 22865896 22865948 -12041622 - MADE1 DNA Mariner -4 76 25 1827 114 92 4 chr21 22865948 22866229 -12041341 - AluSx SINE Alu -6 306 1 364 136 0 30 chr21 22866229 22866242 -12041328 - MADE1 DNA Mariner -55 25 13 1277 213 54 54 chr21 22867112 22867502 -12040068 - MLT1B LTR MaLR 0 390 1 291 252 184 10 chr21 22867502 22867605 -12039965 + L2 LINE L2 3151 3271 -1 269 318 35 0 chr21 22867719 22867804 -12039766 + LTR67 LTR ERVL 100 187 -370 371 308 43 5 chr21 22868035 22868220 -12039350 + LTR67 LTR ERVL 366 557 0 200 318 131 0 chr21 22868226 22868333 -12039237 - MIR SINE MIR -109 153 33 755 142 47 24 chr21 22868455 22868582 -12038988 + AluJ SINE Alu 2 131 -181 743 138 41 41 chr21 22868586 22868731 -12038839 + L1M1 LINE L1 13 157 -7408 965 191 0 0 chr21 22868731 22868904 -12038666 + AluJ SINE Alu 120 292 -20 350 188 21 0 chr21 22869879 22869955 -12037615 + MLT1C LTR MaLR 265 417 -50 3193 190 22 8 chr21 22869956 22870577 -12036993 - L1MB4 LINE L1 -6 6174 5545 454 203 175 34 chr21 22870594 22870771 -12036799 - MLT1K LTR MaLR -54 534 333 286 248 33 66 chr21 22871262 22871383 -12036187 + LTR4 LTR ERV1 1 117 -479 670 236 14 32 chr21 22871655 22871871 -12035699 + LTR4 LTR ERV1 385 596 0 620 175 83 0 chr21 22873085 22873205 -12034365 - FLAM_A SINE Alu -3 130 1 966 265 39 33 chr21 22873685 22874017 -12033553 - L1MC4a LINE L1 -1906 5902 5569 2816 3 0 0 chr21 22874202 22874513 -12033057 - AluYa5 SINE Alu 0 311 1 2144 119 0 0 chr21 22875558 22875860 -12031710 + AluSc SINE Alu 1 302 -7 1991 131 6 6 chr21 22875936 22876248 -12031322 - AluSx SINE Alu 0 312 1 382 141 42 14 chr21 22876549 22876620 -12030950 - MER20 DNA MER1_type -114 105 33 1677 158 7 26 chr21 22877018 22877321 -12030249 + AluJo SINE Alu 1 297 -15 548 304 64 48 chr21 22877354 22877792 -12029778 + L2 LINE L2 2825 3269 -3 615 244 118 36 chr21 22877854 22878075 -12029495 + MIR SINE MIR 10 248 -14 278 364 21 7 chr21 22879110 22879250 -12028320 + MIR SINE MIR 77 218 -44 291 283 150 12 chr21 22880034 22880207 -12027363 - L1MB4 LINE L1 -253 5927 5731 1643 209 82 5 chr21 22880312 22880761 -12026809 - Charlie4a DNA MER1_type -1 507 24 264 355 43 43 chr21 22881816 22882002 -12025568 + MER5A DNA MER1_type 4 189 0 1536 181 14 0 chr21 22882251 22882538 -12025032 - AluJo SINE Alu -13 299 9 614 255 14 0 chr21 22883507 22883652 -12023918 - L2 LINE L2 0 3313 3167 752 282 59 36 chr21 22883775 22884133 -12023437 - L2 LINE L2 -384 2930 2565 1809 127 11 7 chr21 22884224 22884499 -12023071 + AluSq SINE Alu 1 276 -37 2316 102 0 0 chr21 22885384 22885688 -12021882 - AluSx SINE Alu -6 306 3 189 195 0 0 chr21 22885961 22886002 -12021568 + CT-rich Low_complexity Low_complexity 4 44 0 755 112 28 0 chr21 22887065 22887208 -12020362 + (TGGA)n Simple_repeat Simple_repeat 3 149 0 328 249 4 4 chr21 22887841 22887928 -12019642 - MIR SINE MIR -102 106 20 998 184 47 5 chr21 22888132 22888322 -12019248 - MER20 DNA MER1_type -20 199 2 508 237 7 43 chr21 22888997 22889136 -12018434 + MER94 DNA DNA 1 134 0 16881 169 26 13 chr21 22889292 22892567 -12015003 + L1MA4A LINE L1 1 3319 -3529 6412 118 28 12 chr21 22892570 22893749 -12013821 + L1MA4A LINE L1 5799 7001 -4 2299 63 0 0 chr21 22894674 22894961 -12012609 + AluY SINE Alu 12 298 -13 1080 260 107 51 chr21 22895080 22895313 -12012257 - L2 LINE L2 0 3313 3095 1760 113 0 12 chr21 22895313 22895570 -12012000 + AluSc SINE Alu 1 254 -55 1080 260 107 51 chr21 22895570 22896027 -12011543 - L2 LINE L2 -218 3095 2665 276 53 0 0 chr21 22896027 22896065 -12011505 + (TG)n Simple_repeat Simple_repeat 2 39 0 714 157 16 16 chr21 22896067 22896188 -12011382 - FLAM_A SINE Alu -12 121 1 1080 260 107 51 chr21 22896188 22896285 -12011285 - L2 LINE L2 -648 2665 2435 205 191 0 0 chr21 22896347 22896389 -12011181 + T-rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr21 22896620 22896648 -12010922 + AT_rich Low_complexity Low_complexity 1 28 0 669 202 116 110 chr21 22897356 22897692 -12009878 + MER46C DNA MER2_type 1 338 0 237 132 0 0 chr21 22901185 22901223 -12006347 + (A)n Simple_repeat Simple_repeat 1 38 0 373 320 55 41 chr21 22902164 22902383 -12005187 + L2 LINE L2 2618 2839 -475 985 262 23 19 chr21 22902751 22903007 -12004563 + MIR SINE MIR 6 262 0 1854 145 3 7 chr21 22903350 22903654 -12003916 - AluSx SINE Alu -9 303 1 252 156 65 26 chr21 22903749 22903826 -12003744 + A-rich Low_complexity Low_complexity 2 81 0 1255 195 116 22 chr21 22904188 22904455 -12003115 - AluJo SINE Alu -10 292 1 502 345 0 0 chr21 22906386 22906525 -12001045 - L2 LINE L2 0 3272 3134 322 314 27 65 chr21 22907650 22907835 -11999735 - MLT1L LTR MaLR -236 379 202 1596 199 31 3 chr21 22907890 22908211 -11999359 + MER58B DNA MER1_type 1 330 -11 2063 67 33 37 chr21 22908213 22908513 -11999057 + AluY SINE Alu 1 299 -12 2041 181 23 109 chr21 22909024 22909149 -11998421 - MLT1F1 LTR MaLR -8 559 425 2280 142 31 0 chr21 22909149 22909509 -11998061 - THE1C LTR MaLR -4 371 1 10649 101 29 40 chr21 22909509 22911105 -11996465 - THE1C-int LTR MaLR 0 1580 1 2220 153 27 5 chr21 22911105 22911472 -11996098 - THE1C LTR MaLR 0 375 1 2041 181 23 109 chr21 22911472 22911956 -11995614 - MLT1F1 LTR MaLR -139 428 1 667 272 41 12 chr21 22911961 22912207 -11995363 - L1MC4a LINE L1 -1876 5932 5680 683 258 71 32 chr21 22912226 22912509 -11995061 - L1MC4a LINE L1 -2163 5645 5352 2568 48 0 0 chr21 22912865 22913174 -11994396 - AluY SINE Alu -2 309 1 1942 128 78 31 chr21 22913594 22913952 -11993618 + THE1C LTR MaLR 1 375 0 481 250 64 36 chr21 22914207 22914347 -11993223 - L2 LINE L2 -9 3304 3161 912 62 86 0 chr21 22915984 22916112 -11991458 - MER85 DNA T2_type 0 139 1 2103 114 3 0 chr21 22916185 22916483 -11991087 + AluSg SINE Alu 1 299 -11 846 234 20 8 chr21 22916538 22916867 -11990703 + MLT1H1 LTR MaLR 1 384 -171 249 250 42 14 chr21 22916851 22916923 -11990647 + MLT1H1 LTR MaLR 311 384 -171 1007 256 34 4 chr21 22916907 22917145 -11990425 + MLT1H1 LTR MaLR 311 555 0 180 0 0 0 chr21 22920925 22920945 -11986625 + (A)n Simple_repeat Simple_repeat 1 20 0 663 178 199 0 chr21 22923862 22924008 -11983562 + MSTA LTR MaLR 1 175 -253 2051 75 23 39 chr21 22924008 22924342 -11983228 - AluY SINE Alu 0 329 1 1255 140 0 55 chr21 22924354 22924590 -11982980 - AluJb SINE Alu -4 308 86 1593 97 92 8 chr21 22924590 22924828 -11982742 + MSTA LTR MaLR 171 428 0 1973 234 24 24 chr21 22925054 22925559 -11982011 - MLT1D LTR MaLR 0 505 1 213 39 0 0 chr21 22926464 22926490 -11981080 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 825 201 154 19 chr21 22926560 22926774 -11980796 + MIR SINE MIR 19 261 -1 195 129 0 0 chr21 22927470 22927501 -11980069 + (TCCCC)n Simple_repeat Simple_repeat 5 35 0 566 181 57 9 chr21 22927691 22927796 -11979774 + MER81 DNA DNA 1 110 -4 677 125 34 23 chr21 22928420 22928596 -11978974 + GA-rich Low_complexity Low_complexity 3 180 0 596 278 59 6 chr21 22928660 22928829 -11978741 - MIR SINE MIR -32 230 53 493 302 23 23 chr21 22929134 22929306 -11978264 + MIR SINE MIR 89 260 -2 1583 159 0 44 chr21 22929306 22929628 -11977942 - AluJb SINE Alu 0 309 1 2261 182 49 94 chr21 22929739 22930273 -11977297 - LTR9 LTR ERV1 0 779 109 2271 41 0 0 chr21 22930273 22930539 -11977031 + AluY SINE Alu 45 310 -1 2261 182 49 94 chr21 22930539 22930644 -11976926 - LTR9 LTR ERV1 -670 109 1 2558 7 0 0 chr21 22931126 22931398 -11976172 + AluYb8 SINE Alu 43 314 -4 198 71 0 0 chr21 22931516 22931544 -11976026 + (ATG)n Simple_repeat Simple_repeat 3 30 0 418 244 50 89 chr21 22931587 22931767 -11975803 - MIR SINE MIR -82 180 8 381 213 37 56 chr21 22935934 22936042 -11971528 + MER5A DNA MER1_type 7 112 -77 943 271 93 25 chr21 22936083 22936100 -11971470 - L1ME2 LINE L1 -9 6155 6141 2705 126 21 21 chr21 22936100 22936528 -11971042 - MSTA LTR MaLR 0 428 1 943 271 93 25 chr21 22936528 22936941 -11970629 - L1ME2 LINE L1 -23 6141 5696 297 0 0 0 chr21 22937500 22937533 -11970037 + (CA)n Simple_repeat Simple_repeat 1 33 0 1830 162 0 17 chr21 22940053 22940349 -11967221 + AluJo SINE Alu 1 291 -21 29 0 0 0 chr21 22940354 22940383 -11967187 + AT_rich Low_complexity Low_complexity 1 29 0 2283 116 0 0 chr21 22940594 22940905 -11966665 + AluY SINE Alu 1 311 0 1891 124 49 0 chr21 22941312 22941579 -11965991 + AluSx SINE Alu 1 280 -32 462 36 0 0 chr21 22941579 22941635 -11965935 + (TAAA)n Simple_repeat Simple_repeat 2 57 0 618 71 0 0 chr21 22942910 22942994 -11964576 + (CCCTAA)n Simple_repeat Simple_repeat 1 84 0 851 323 92 71 chr21 22943728 22944458 -11963112 + HAL1b LINE L1 165 909 -439 2353 95 10 0 chr21 22944468 22944773 -11962797 + AluSx SINE Alu 1 308 -4 1326 198 22 88 chr21 22945272 22945682 -11961888 + MLT1B LTR MaLR 8 390 0 206 278 0 19 chr21 22945810 22945864 -11961706 + L2 LINE L2 3203 3255 -58 261 0 0 0 chr21 22946894 22946923 -11960647 + (TC)n Simple_repeat Simple_repeat 2 30 0 342 0 0 0 chr21 22946925 22946963 -11960607 + (CA)n Simple_repeat Simple_repeat 1 38 0 28 0 0 0 chr21 22948301 22948329 -11959241 + AT_rich Low_complexity Low_complexity 1 28 0 2037 137 0 0 chr21 22948416 22948694 -11958876 + AluSx SINE Alu 6 283 -29 450 0 0 0 chr21 22948694 22948744 -11958826 + (AAATG)n Simple_repeat Simple_repeat 1 50 0 537 16 0 0 chr21 22948745 22948807 -11958763 + (TAAAA)n Simple_repeat Simple_repeat 2 63 0 2132 110 24 0 chr21 22949350 22949642 -11957928 - AluSx SINE Alu -13 299 1 250 294 8 17 chr21 22949867 22949986 -11957584 + (CA)n Simple_repeat Simple_repeat 2 119 0 1781 133 0 100 chr21 22950141 22950480 -11957090 - AluJb SINE Alu -6 306 2 21 0 0 0 chr21 22950484 22950505 -11957065 + AT_rich Low_complexity Low_complexity 1 21 0 758 203 0 15 chr21 22951697 22951830 -11955740 + AluJo/FLAM SINE Alu 2 132 -170 1372 191 0 4 chr21 22951832 22952067 -11955503 + AluJo SINE Alu 1 234 -78 1905 130 7 18 chr21 22952068 22952352 -11955218 - AluSx SINE Alu -31 281 1 226 188 42 0 chr21 22952376 22952424 -11955146 + MIR SINE MIR 102 151 -111 2338 93 3 31 chr21 22955705 22956026 -11951544 - AluSq SINE Alu 0 313 2 511 301 48 0 chr21 22956034 22956200 -11951370 + MER5B DNA MER1_type 5 178 0 1612 218 51 21 chr21 22956395 22956827 -11950743 + MLT1C LTR MaLR 19 463 -4 486 282 41 35 chr21 22957082 22957252 -11950318 + MIR3 SINE MIR 24 194 -14 1918 219 46 24 chr21 22957779 22958240 -11949330 - MLT1E1 LTR MaLR -1 653 183 987 204 61 4 chr21 22958225 22958455 -11949115 - MLT1E1 LTR MaLR -399 255 13 2215 138 3 0 chr21 22959322 22959633 -11947937 - AluSx SINE Alu 0 312 1 186 350 10 52 chr21 22959807 22959904 -11947666 + MIR3 SINE MIR 111 203 -5 30 0 0 0 chr21 22960108 22960138 -11947432 + AT_rich Low_complexity Low_complexity 1 30 0 295 348 59 0 chr21 22961839 22961957 -11945613 + MIR SINE MIR 82 206 -56 497 138 0 0 chr21 22962666 22962746 -11944824 - MADE1 DNA Mariner 0 80 1 309 307 69 0 chr21 22963936 22964037 -11943533 - MIR SINE MIR -69 139 32 829 201 95 0 chr21 22964061 22964230 -11943340 + MER5A DNA MER1_type 5 189 0 475 282 64 50 chr21 22965440 22965642 -11941928 - MIR SINE MIR 0 262 58 1136 170 74 4 chr21 22966683 22966913 -11940657 - L1MB5 LINE L1 -8 6166 5921 1406 285 34 10 chr21 22967114 22967532 -11940038 - L1MC4a LINE L1 -1863 5945 5518 963 249 32 26 chr21 22969166 22969479 -11938091 + LTR16B LTR ERVL 59 373 -91 23 0 0 0 chr21 22969657 22969680 -11937890 + AT_rich Low_complexity Low_complexity 1 23 0 279 296 17 35 chr21 22970131 22970246 -11937324 - MIR3 SINE MIR -2 206 94 761 164 0 6 chr21 22970294 22970459 -11937111 + (TCCA)n Simple_repeat Simple_repeat 1 164 0 681 222 0 0 chr21 22970481 22970657 -11936913 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 735 142 8 37 chr21 22971990 22972124 -11935446 + FRAM SINE Alu 46 175 -1 527 260 104 0 chr21 22973637 22973810 -11933760 + MIR SINE MIR 36 226 -36 318 180 0 0 chr21 22974743 22974804 -11932766 + (TG)n Simple_repeat Simple_repeat 2 62 0 36 0 0 0 chr21 22974808 22974844 -11932726 + AT_rich Low_complexity Low_complexity 1 36 0 904 182 7 7 chr21 22974844 22974998 -11932572 - FRAM SINE Alu -12 154 1 2278 116 0 0 chr21 22976317 22976620 -11930950 + AluSx SINE Alu 1 303 -9 2346 103 3 6 chr21 22977201 22977513 -11930057 + AluSq SINE Alu 1 311 -2 1972 141 7 0 chr21 22977822 22978121 -11929449 - AluSx SINE Alu -11 301 1 378 0 0 0 chr21 22978619 22978661 -11928909 + (TG)n Simple_repeat Simple_repeat 1 42 0 677 262 64 47 chr21 22979110 22979408 -11928162 - L1ME4a LINE L1 -267 5854 5552 2210 105 0 3 chr21 22979496 22979790 -11927780 - AluSx SINE Alu -19 293 1 23 0 0 0 chr21 22979803 22979826 -11927744 + AT_rich Low_complexity Low_complexity 1 23 0 2524 257 71 14 chr21 22979843 22980672 -11926898 - L1ME3 LINE L1 -22 6140 5265 1670 142 151 37 chr21 22981499 22981824 -11925746 + THE1B LTR MaLR 1 362 -2 324 231 50 25 chr21 22981874 22981978 -11925592 - MIR SINE MIR -93 115 18 1571 229 44 41 chr21 22982179 22982638 -11924932 - MLT1C LTR MaLR 0 467 8 198 0 0 0 chr21 22983439 22983461 -11924109 + (CA)n Simple_repeat Simple_repeat 2 23 0 549 0 0 0 chr21 22983460 22983521 -11924049 + (TC)n Simple_repeat Simple_repeat 1 61 0 299 272 25 0 chr21 22983879 22983960 -11923610 + (CATA)n Simple_repeat Simple_repeat 4 86 0 435 294 5 27 chr21 22985167 22985351 -11922219 + GA-rich Low_complexity Low_complexity 1 180 0 546 289 38 0 chr21 22985794 22985953 -11921617 + MER5B DNA MER1_type 6 170 -8 1769 146 24 17 chr21 22986223 22986510 -11921060 + AluJo SINE Alu 1 289 -23 926 126 66 0 chr21 22987122 22987289 -11920281 + L1MA7 LINE L1 6112 6289 -2 2551 51 3 0 chr21 22987816 22988111 -11919459 - AluY SINE Alu -15 296 1 252 350 0 0 chr21 22988176 22988256 -11919314 + (TG)n Simple_repeat Simple_repeat 2 81 0 421 211 22 76 chr21 22988213 22988398 -11919172 + (CATATA)n Simple_repeat Simple_repeat 3 177 0 261 125 14 56 chr21 22988429 22988501 -11919069 + (TATATG)n Simple_repeat Simple_repeat 4 72 0 277 245 21 32 chr21 22988508 22988602 -11918968 - MER5A DNA MER1_type -83 106 14 1066 232 42 76 chr21 22989275 22989555 -11918015 + MER58D DNA MER1_type 16 281 -2139 2138 133 0 0 chr21 22989555 22989848 -11917722 + AluSx SINE Alu 2 294 -18 1066 232 42 76 chr21 22989848 22989950 -11917620 + MER58D DNA MER1_type 281 385 -1 465 248 77 9 chr21 22991010 22991158 -11916412 + MIR SINE MIR 35 192 -65 465 219 76 0 chr21 22992596 22992715 -11914855 - L1MC/D LINE L1 -1990 5818 5691 207 154 51 0 chr21 22993183 22993222 -11914348 + CT-rich Low_complexity Low_complexity 3 43 0 25 31 0 0 chr21 22993304 22993336 -11914234 + AT_rich Low_complexity Low_complexity 1 32 0 2940 182 28 0 chr21 22993357 22993885 -11913685 - MER67A LTR ERV1 0 543 1 358 150 117 0 chr21 22994266 22994326 -11913244 + MER63 DNA MER1_type 984 1050 -11 1110 190 58 90 chr21 22994544 22994667 -11912903 - AluJo SINE Alu -1 301 176 271 59 20 20 chr21 22994667 22994718 -11912852 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1110 190 58 90 chr21 22994718 22994905 -11912665 - AluJo SINE Alu -126 176 1 222 214 0 0 chr21 22995965 22996007 -11911563 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 513 298 40 0 chr21 22996036 22996187 -11911383 + MIR SINE MIR 4 160 -102 751 192 0 0 chr21 22996190 22996315 -11911255 + FLAM_C SINE Alu 1 125 -8 263 264 0 0 chr21 22996377 22996449 -11911121 + (TA)n Simple_repeat Simple_repeat 2 73 0 342 269 56 56 chr21 22997222 22997382 -11910188 - MIR SINE MIR -17 245 86 1072 208 20 58 chr21 22997887 22998181 -11909389 - L1ME3A LINE L1 -8 6162 5880 1805 123 0 0 chr21 22998228 22998472 -11909098 + AluSx SINE Alu 1 244 -68 47 44 0 0 chr21 22998527 22998595 -11908975 + AT_rich Low_complexity Low_complexity 1 68 0 2029 271 62 44 chr21 22998641 22999383 -11908187 - L1MDa LINE L1 -2283 3846 3071 2267 125 0 0 chr21 22999383 22999694 -11907876 - AluSx SINE Alu -1 311 1 2029 271 62 44 chr21 22999694 23000219 -11907351 - L1MDa LINE L1 -3058 3071 2557 700 215 48 74 chr21 23000325 23000637 -11906933 - L1MDa LINE L1 -3603 2526 2223 983 241 35 13 chr21 23000661 23000868 -11906702 - MLT1F1 LTR MaLR 0 567 356 701 193 0 0 chr21 23000868 23000987 -11906583 + Tigger7 DNA MER2_type 1 119 -2368 649 242 78 7 chr21 23001222 23001375 -11906195 + MLT1F1 LTR MaLR 8 171 -396 2674 177 55 21 chr21 23001399 23001956 -11905614 - Tigger7 DNA MER2_type -125 2462 10 920 210 26 10 chr21 23001987 23002182 -11905388 + MLT1F1 LTR MaLR 370 567 0 522 275 41 44 chr21 23002511 23002819 -11904751 - L1MDa LINE L1 -4512 1617 1309 2598 64 0 0 chr21 23002819 23003130 -11904440 - AluY SINE Alu 0 311 1 522 275 41 44 chr21 23003130 23003185 -11904385 - L1MDa LINE L1 -4820 1309 1255 189 0 0 0 chr21 23003387 23003408 -11904162 + (TG)n Simple_repeat Simple_repeat 2 22 0 558 164 17 69 chr21 23003421 23003537 -11904033 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 310 354 21 42 chr21 23003541 23004013 -11903557 - L1MDa LINE L1 -4862 1257 796 423 0 0 0 chr21 23004525 23004572 -11902998 + (CA)n Simple_repeat Simple_repeat 2 48 0 1065 241 81 60 chr21 23006479 23006588 -11900982 - L1ME3 LINE L1 -202 5960 5855 2458 95 0 0 chr21 23006588 23006892 -11900678 - AluSq SINE Alu -9 304 1 1065 241 81 60 chr21 23006892 23007263 -11900307 - L1ME3 LINE L1 -307 5855 5470 1736 216 17 8 chr21 23007645 23008007 -11899563 + MLT1A1 LTR MaLR 1 365 0 603 278 96 67 chr21 23008620 23008917 -11898653 - MLT1J LTR MaLR -130 320 45 279 247 41 0 chr21 23009474 23009547 -11898023 + L2 LINE L2 2376 2451 -863 811 131 183 7 chr21 23009568 23009721 -11897849 + MSTA LTR MaLR 1 180 -248 954 148 23 120 chr21 23009721 23009979 -11897591 - AluJb SINE Alu 0 322 86 1380 152 97 8 chr21 23009979 23010216 -11897354 + MSTA LTR MaLR 171 428 0 435 179 0 0 chr21 23010216 23010300 -11897270 + L2 LINE L2 2489 2572 -742 271 225 485 0 chr21 23010469 23010638 -11896932 + L2 LINE L2 2714 2964 -350 1826 183 34 66 chr21 23010764 23011018 -11896552 + MLT1C LTR MaLR 13 247 -220 1115 201 50 104 chr21 23011018 23011402 -11896168 - MLT1A1 LTR MaLR -2 363 1 1826 183 34 66 chr21 23011402 23011616 -11895954 + MLT1C LTR MaLR 247 466 -1 323 325 106 20 chr21 23011623 23011774 -11895796 + L2 LINE L2 3150 3313 0 2226 115 39 39 chr21 23011972 23012336 -11895234 + THE1B LTR MaLR 1 364 0 398 300 83 10 chr21 23012528 23012763 -11894807 - MIR SINE MIR 0 262 11 2817 149 24 4 chr21 23013335 23013791 -11893779 - MLT1C LTR MaLR -2 465 1 453 240 7 75 chr21 23014565 23014651 -11892919 - MER45A DNA AcHobo -1404 177 103 2339 104 0 0 chr21 23014651 23014948 -11892622 + AluSg SINE Alu 1 297 -13 453 240 7 75 chr21 23014948 23015007 -11892563 - MER45A DNA AcHobo -1478 103 42 788 172 17 46 chr21 23016096 23016270 -11891300 + L1MC3 LINE L1 7101 7269 -516 2954 128 7 0 chr21 23016588 23017019 -11890551 + MER57B LTR ERV1 1 434 0 2406 65 16 7 chr21 23017305 23017613 -11889957 - AluY SINE Alu 0 311 1 235 330 0 34 chr21 23019328 23019416 -11888154 + GA-rich Low_complexity Low_complexity 6 90 0 300 53 0 0 chr21 23019646 23019684 -11887886 + (CA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr21 23020380 23020401 -11887169 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 23021354 23021398 -11886172 + AT_rich Low_complexity Low_complexity 1 44 0 210 37 0 0 chr21 23021499 23021526 -11886044 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 26 50 0 0 chr21 23021618 23021658 -11885912 + AT_rich Low_complexity Low_complexity 1 40 0 23 78 0 0 chr21 23022133 23022184 -11885386 + GC_rich Low_complexity Low_complexity 1 51 0 266 204 8 38 chr21 23023320 23023452 -11884118 + (TATAA)n Simple_repeat Simple_repeat 1 128 0 1327 212 55 25 chr21 23023485 23023761 -11883809 + MER58B DNA MER1_type 4 293 -2127 2265 118 0 0 chr21 23023761 23024065 -11883505 - AluSx SINE Alu -8 304 1 1327 212 55 25 chr21 23024065 23024113 -11883457 + MER58B DNA MER1_type 293 338 -3 228 265 0 15 chr21 23024292 23024360 -11883210 - MER116 DNA Mariner 0 80 14 1003 152 22 78 chr21 23024795 23025025 -11882545 - MER20 DNA MER1_type 0 219 3 201 211 18 18 chr21 23025390 23025447 -11882123 + CT-rich Low_complexity Low_complexity 2 58 0 1234 152 43 9 chr21 23027873 23028084 -11879486 + MER20 DNA MER1_type 1 218 -1 2026 139 42 0 chr21 23028605 23028935 -11878635 - MER2 DNA MER2_type 0 344 1 372 267 35 35 chr21 23032350 23032466 -11875104 - L2 LINE L2 -12 3260 3145 248 226 0 0 chr21 23032533 23032586 -11874984 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 274 267 50 20 chr21 23032926 23033027 -11874543 + MIR SINE MIR 146 249 -13 2457 71 0 0 chr21 23033327 23033638 -11873932 + AluY SINE Alu 1 311 0 1290 261 34 11 chr21 23034011 23034367 -11873203 + L1MCb LINE L1 5 368 -5677 1926 198 91 25 chr21 23034343 23034804 -11872766 + L1MCb LINE L1 669 1098 -5466 2138 87 3 35 chr21 23034804 23035114 -11872456 - AluSx SINE Alu -12 300 1 1926 198 91 25 chr21 23035114 23035891 -11871679 + L1MCb LINE L1 1098 2130 -4434 3806 247 31 6 chr21 23035958 23037255 -11870315 + L1MCb LINE L1 2347 3639 -2925 266 301 112 19 chr21 23038544 23038746 -11868824 + MIR SINE MIR 33 250 -12 299 344 61 6 chr21 23040613 23040776 -11866794 + MIR SINE MIR 19 190 -72 24 0 0 0 chr21 23042903 23042927 -11864643 + AT_rich Low_complexity Low_complexity 1 24 0 1130 167 20 5 chr21 23043140 23043338 -11864232 + MER20 DNA MER1_type 2 202 -17 217 225 0 0 chr21 23048422 23048462 -11859108 + polypurine Low_complexity Low_complexity 6 45 0 276 88 175 0 chr21 23049078 23049135 -11858435 + MIR SINE MIR 82 148 -60 1655 87 87 66 chr21 23050429 23050718 -11856852 + AluSq SINE Alu 1 295 -18 327 311 19 0 chr21 23050995 23051101 -11856469 + MIR3 SINE MIR 92 199 -9 385 308 45 15 chr21 23051457 23051590 -11855980 - MIR SINE MIR -21 241 105 2356 90 3 0 chr21 23053492 23053804 -11853766 - AluSq SINE Alu 0 313 1 1160 209 118 55 chr21 23055768 23056166 -11851404 + MLT1C LTR MaLR 45 467 0 1314 190 104 73 chr21 23056170 23056488 -11851082 + MSTD LTR MaLR 1 335 -61 2084 113 3 25 chr21 23056488 23056806 -11850764 - AluSx SINE Alu -1 311 1 1314 190 104 73 chr21 23056806 23056871 -11850699 + MSTD LTR MaLR 335 396 0 7164 221 30 46 chr21 23056873 23058636 -11848934 + MSTD-int LTR MaLR 2 1735 0 1565 210 99 9 chr21 23058636 23058970 -11848600 + MSTD LTR MaLR 1 364 -32 414 284 136 30 chr21 23059007 23059243 -11848327 - MIR SINE MIR -1 261 1 216 244 0 0 chr21 23059844 23059885 -11847685 + polypurine Low_complexity Low_complexity 6 46 0 2200 70 0 3 chr21 23063157 23063465 -11844105 - AluY SINE Alu 0 307 1 216 67 0 0 chr21 23064080 23064110 -11843460 + (TG)n Simple_repeat Simple_repeat 2 31 0 385 174 82 41 chr21 23064267 23064365 -11843205 - MER5A DNA MER1_type -84 105 4 182 103 0 51 chr21 23064677 23064716 -11842854 + (GGGA)n Simple_repeat Simple_repeat 4 40 0 180 0 0 0 chr21 23065253 23065273 -11842297 + (TCTCCC)n Simple_repeat Simple_repeat 2 21 0 22 56 0 0 chr21 23068963 23068999 -11838571 + AT_rich Low_complexity Low_complexity 1 36 0 299 250 95 43 chr21 23069153 23069269 -11838301 - MIR3 SINE MIR -21 187 66 200 289 28 14 chr21 23069282 23069424 -11838146 + (CA)n Simple_repeat Simple_repeat 2 145 0 445 182 0 61 chr21 23069735 23069834 -11837736 - MER5A DNA MER1_type -83 106 14 931 294 118 15 chr21 23071676 23072081 -11835489 + L2 LINE L2 2867 3313 0 1867 119 41 7 chr21 23072283 23072577 -11834993 + AluSx SINE Alu 3 306 -6 481 272 3 6 chr21 23072722 23072848 -11834722 + (CA)n Simple_repeat Simple_repeat 1 126 -502 1972 125 0 10 chr21 23072848 23073152 -11834418 + AluSg SINE Alu 1 301 -9 481 272 3 6 chr21 23073152 23073352 -11834218 + (CA)n Simple_repeat Simple_repeat 126 628 0 400 200 29 18 chr21 23073407 23073577 -11833993 + (CATA)n Simple_repeat Simple_repeat 4 175 0 264 122 0 0 chr21 23074638 23074679 -11832891 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 189 0 0 0 chr21 23076256 23076277 -11831293 + (T)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr21 23077550 23077583 -11829987 + AT_rich Low_complexity Low_complexity 1 33 0 320 274 37 52 chr21 23077604 23077739 -11829831 - MIR SINE MIR -50 212 80 273 236 73 45 chr21 23078330 23078440 -11829130 - MIR SINE MIR -37 225 113 2280 79 0 0 chr21 23078504 23078796 -11828774 - AluSx SINE Alu -20 292 1 678 13 54 51 chr21 23079312 23079558 -11828012 + (TA)n Simple_repeat Simple_repeat 1 246 0 249 33 0 0 chr21 23079975 23080005 -11827565 + (TTA)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr21 23080823 23080871 -11826699 + AT_rich Low_complexity Low_complexity 1 48 0 236 331 73 16 chr21 23080973 23081097 -11826473 - MIR SINE MIR 0 262 132 329 318 30 15 chr21 23081456 23081588 -11825982 - MIR3 SINE MIR -39 169 36 2073 95 0 7 chr21 23081946 23082263 -11825307 + AluY SINE Alu 1 315 0 270 301 81 2 chr21 23083563 23083734 -11823836 + MIR SINE MIR 39 259 -3 2033 117 0 3 chr21 23083877 23084175 -11823395 - AluSx SINE Alu -15 297 1 1257 137 0 10 chr21 23084471 23084675 -11822895 + AluSg/x SINE Alu 108 309 -1 1958 110 0 14 chr21 23085491 23085795 -11821775 + AluSx SINE Alu 8 307 0 223 175 18 70 chr21 23086451 23086508 -11821062 - MIR3 SINE MIR -45 163 110 368 274 0 0 chr21 23088488 23088572 -11818998 - MIR SINE MIR -90 172 89 454 288 6 31 chr21 23090408 23090571 -11816999 + MIR SINE MIR 77 235 -27 267 79 0 0 chr21 23090580 23090618 -11816952 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr21 23092079 23092102 -11815468 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr21 23092177 23092197 -11815373 + (GA)n Simple_repeat Simple_repeat 1 20 0 373 273 11 0 chr21 23092245 23092333 -11815237 + MIR3 SINE MIR 97 185 -23 1518 224 64 6 chr21 23092457 23092818 -11814752 - MLT1C LTR MaLR 0 467 86 484 300 27 40 chr21 23093082 23093282 -11814288 - MIR SINE MIR -46 216 16 1938 94 0 4 chr21 23093612 23093877 -11813693 - AluSg SINE Alu -8 302 39 906 233 63 18 chr21 23094996 23095219 -11812351 + MIR SINE MIR 23 255 -7 438 20 0 0 chr21 23095336 23095387 -11812183 + (TG)n Simple_repeat Simple_repeat 2 52 0 1679 152 40 0 chr21 23097176 23097297 -11810273 + AluJb SINE Alu 1 116 -196 309 36 55 0 chr21 23097297 23097352 -11810218 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 1679 152 40 0 chr21 23097352 23097507 -11810063 + AluJb SINE Alu 116 288 -24 403 329 67 42 chr21 23098595 23098926 -11808644 + L2 LINE L2 2934 3272 0 967 197 34 0 chr21 23100463 23100671 -11806899 + MER20 DNA MER1_type 1 215 -4 2167 111 0 0 chr21 23100739 23101045 -11806525 + AluSc SINE Alu 1 306 -3 2171 108 0 0 chr21 23101908 23102205 -11805365 - AluSx SINE Alu -15 297 1 21 57 0 0 chr21 23102608 23102643 -11804927 + AT_rich Low_complexity Low_complexity 1 35 0 956 182 74 5 chr21 23102762 23102965 -11804605 - MER20 DNA MER1_type -2 217 1 201 74 0 0 chr21 23104185 23104212 -11803358 + (TC)n Simple_repeat Simple_repeat 2 28 0 219 69 0 0 chr21 23104214 23104243 -11803327 + (CA)n Simple_repeat Simple_repeat 1 29 0 2253 97 3 3 chr21 23104389 23104697 -11802873 + AluSq SINE Alu 1 308 -5 2311 78 0 7 chr21 23106912 23107218 -11800352 - AluSq SINE Alu -7 306 3 240 163 0 0 chr21 23108231 23108274 -11799296 + A-rich Low_complexity Low_complexity 1 43 0 234 150 0 0 chr21 23108422 23108462 -11799108 + (TA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr21 23109405 23109426 -11798144 + AT_rich Low_complexity Low_complexity 1 21 0 469 117 39 0 chr21 23110967 23111044 -11796526 + MADE1 DNA Mariner 1 80 0 27 29 0 0 chr21 23118708 23118742 -11788828 + GC_rich Low_complexity Low_complexity 1 34 0 32 0 0 0 chr21 23118907 23118939 -11788631 + GC_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr21 23120844 23120874 -11786696 + GC_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 23121763 23121785 -11785785 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 23122572 23122600 -11784970 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 23123832 23123854 -11783716 + AT_rich Low_complexity Low_complexity 1 22 0 514 261 98 7 chr21 23124773 23124926 -11782644 - MIR SINE MIR -17 245 79 441 0 0 0 chr21 23124942 23124991 -11782579 + (CA)n Simple_repeat Simple_repeat 2 50 0 182 299 13 39 chr21 23125377 23125454 -11782116 - L2 LINE L2 -19 3294 3220 21 36 0 0 chr21 23125911 23125939 -11781631 + AT_rich Low_complexity Low_complexity 1 28 0 2290 122 0 0 chr21 23126462 23126774 -11780796 + AluSx SINE Alu 1 312 0 1776 193 129 97 chr21 23127826 23128432 -11779138 + MLT1E2 LTR MaLR 1 625 -1 2087 138 0 0 chr21 23128976 23129273 -11778297 - AluSx SINE Alu -13 299 3 1495 175 127 21 chr21 23129296 23129634 -11777936 + MLT1A2 LTR MaLR 1 374 0 253 191 101 45 chr21 23129683 23129772 -11777798 - MIR SINE MIR -51 211 118 815 141 0 16 chr21 23129937 23130058 -11777512 + FLAM_C SINE Alu 14 132 -11 1787 139 38 16 chr21 23130088 23130405 -11777165 - MER33 DNA MER1_type 0 324 1 2098 94 3 11 chr21 23131291 23131605 -11775965 + AluSg SINE Alu 1 312 0 281 254 127 36 chr21 23132783 23132893 -11774677 + MIR3 SINE MIR 77 196 -12 21 0 0 0 chr21 23133252 23133273 -11774297 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 23134416 23134438 -11773132 + AT_rich Low_complexity Low_complexity 1 22 0 442 282 138 21 chr21 23136493 23136681 -11770889 - MIR SINE MIR -10 252 43 282 73 0 0 chr21 23138990 23139031 -11768539 + (TG)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr21 23139650 23139670 -11767900 + (A)n Simple_repeat Simple_repeat 1 20 0 260 168 0 59 chr21 23139914 23140015 -11767555 + CT-rich Low_complexity Low_complexity 3 97 0 1273 183 53 4 chr21 23140847 23141093 -11766477 - AluJo SINE Alu -16 296 39 254 285 179 17 chr21 23141580 23141759 -11765811 + L2 LINE L2 2563 2770 -544 319 308 44 44 chr21 23142044 23142226 -11765344 + L2 LINE L2 3132 3313 0 2046 122 3 7 chr21 23143010 23143298 -11764272 + AluSq SINE Alu 1 287 -26 240 35 0 0 chr21 23143298 23143327 -11764243 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 299 256 132 33 chr21 23145028 23145149 -11762421 + MIR SINE MIR 63 195 -67 485 331 25 0 chr21 23146911 23147068 -11760502 - MIR SINE MIR -55 207 47 2186 123 3 0 chr21 23147910 23148211 -11759359 + AluSg SINE Alu 1 302 -8 2264 107 7 0 chr21 23148689 23148988 -11758582 + AluSc SINE Alu 1 301 -8 810 218 39 68 chr21 23149044 23149278 -11758292 - MIR SINE MIR -21 241 15 288 311 8 34 chr21 23149993 23150112 -11757458 - L2 LINE L2 -23 3290 3175 2750 140 32 36 chr21 23150860 23150915 -11756655 - L1MB3 LINE L1 -4 6179 6125 2103 141 0 0 chr21 23150915 23151220 -11756350 - AluSx SINE Alu -7 305 1 2750 140 32 36 chr21 23151220 23151665 -11755905 - L1MB3 LINE L1 -58 6125 5681 2004 134 3 7 chr21 23151697 23151995 -11755575 - AluSx SINE Alu -15 297 1 436 323 42 0 chr21 23152370 23152537 -11755033 - MIR SINE MIR -21 241 68 560 209 22 22 chr21 23152920 23153059 -11754511 - MIR SINE MIR 0 262 124 341 327 156 53 chr21 23154312 23154710 -11752860 - L2 LINE L2 -20 3252 2814 1853 169 47 33 chr21 23154783 23155143 -11752427 - MLT1A1 LTR MaLR 0 365 1 2115 184 58 22 chr21 23155342 23155793 -11751777 + MLT1C LTR MaLR 1 467 0 421 271 76 0 chr21 23156067 23156211 -11751359 + L1ME4a LINE L1 5961 6115 -6 1834 140 48 3 chr21 23156254 23156547 -11751023 + AluJo SINE Alu 1 306 -6 647 294 0 17 chr21 23157947 23158127 -11749443 + MER5B DNA MER1_type 1 177 -1 835 195 69 11 chr21 23158149 23158323 -11749247 - MER3 DNA MER1_type -18 191 8 2029 96 53 3 chr21 23158473 23158755 -11748815 + AluSx SINE Alu 1 296 -16 224 182 0 30 chr21 23160109 23160175 -11747395 + (TA)n Simple_repeat Simple_repeat 2 65 0 322 204 32 43 chr21 23160256 23160349 -11747221 + L1MC4 LINE L1 6612 6703 -1339 25 0 0 0 chr21 23160349 23160374 -11747196 + AT_rich Low_complexity Low_complexity 1 25 0 539 211 120 7 chr21 23160444 23160586 -11746984 + MER117 DNA MER1_type 2 159 -38 439 223 0 21 chr21 23160587 23160681 -11746889 - MER3 DNA MER1_type -110 99 8 225 0 0 0 chr21 23160781 23160806 -11746764 + (CA)n Simple_repeat Simple_repeat 1 25 0 657 126 48 6 chr21 23161380 23161547 -11746023 + (TA)n Simple_repeat Simple_repeat 1 174 0 338 107 80 13 chr21 23161547 23161622 -11745948 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 525 215 118 7 chr21 23161681 23161825 -11745745 + MER117 DNA MER1_type 2 161 -36 184 352 11 0 chr21 23162356 23162444 -11745126 - L2 LINE L2 -925 2389 2301 23 0 0 0 chr21 23164321 23164344 -11743226 + AT_rich Low_complexity Low_complexity 1 23 0 1239 194 5 0 chr21 23165671 23165888 -11741682 - MER20 DNA MER1_type -1 218 1 183 80 0 0 chr21 23167293 23167318 -11740252 + (TTA)n Simple_repeat Simple_repeat 1 25 0 449 139 0 12 chr21 23168559 23168645 -11738925 + (TCC)n Simple_repeat Simple_repeat 3 87 0 225 132 0 0 chr21 23171868 23171906 -11735664 + (T)n Simple_repeat Simple_repeat 1 38 0 1859 165 7 3 chr21 23174072 23174369 -11733201 - AluJo SINE Alu -14 298 1 23 0 0 0 chr21 23177234 23177257 -11730313 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr21 23178221 23178263 -11729307 + AT_rich Low_complexity Low_complexity 1 42 0 2254 100 6 31 chr21 23178796 23179115 -11728455 - AluSq SINE Alu -2 311 1 209 236 36 0 chr21 23180045 23180100 -11727470 - MIR3 SINE MIR -2 206 150 27 29 0 0 chr21 23180336 23180370 -11727200 + AT_rich Low_complexity Low_complexity 1 34 0 1984 129 21 0 chr21 23180518 23180804 -11726766 + AluSq SINE Alu 1 292 -21 832 56 24 48 chr21 23181386 23181512 -11726058 - L1PA7 LINE L1 -959 5187 5065 7132 60 4 6 chr21 23181512 23182454 -11725116 + L1PA7 LINE L1 5213 6153 -1 238 108 84 169 chr21 23183297 23183380 -11724190 + MLT1L LTR MaLR 24 99 -516 960 240 70 48 chr21 23183441 23183712 -11723858 + MLT1J LTR MaLR 183 459 -52 247 303 0 26 chr21 23184610 23184686 -11722884 + MLT1J LTR MaLR 107 180 -331 415 280 39 55 chr21 23184786 23184968 -11722602 + MLT1J2 LTR MaLR 266 444 -6 316 263 21 11 chr21 23185068 23185163 -11722407 + MIR SINE MIR 81 176 -86 295 292 0 0 chr21 23185363 23185452 -11722118 + MIR SINE MIR 174 262 0 7626 29 0 0 chr21 23188396 23189274 -11718296 + L1PA3 LINE L1 5277 6154 -1 756 208 46 0 chr21 23189375 23189548 -11718022 + MIR SINE MIR 75 255 -7 700 222 111 74 chr21 23190229 23190526 -11717044 + MLT1J2 LTR MaLR 1 308 -142 1962 98 68 4 chr21 23191155 23191463 -11716107 + AluSc SINE Alu 1 325 0 1923 154 20 20 chr21 23191949 23192254 -11715316 - AluJo SINE Alu -7 305 1 253 176 0 0 chr21 23193068 23193119 -11714451 - MER5B DNA MER1_type -122 56 6 225 0 0 0 chr21 23194048 23194073 -11713497 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 2454 77 0 7 chr21 23194268 23194578 -11712992 + AluSc SINE Alu 1 308 -1 287 210 86 12 chr21 23194768 23194849 -11712721 + MIR SINE MIR 50 136 -72 390 369 0 0 chr21 23194942 23195118 -11712452 + (CA)n Simple_repeat Simple_repeat 1 176 0 410 299 0 37 chr21 23195141 23195328 -11712242 + (CA)n Simple_repeat Simple_repeat 1 180 0 236 259 0 0 chr21 23195549 23195607 -11711963 + A-rich Low_complexity Low_complexity 4 61 0 386 315 94 11 chr21 23196135 23196316 -11711254 - MIR SINE MIR -51 211 16 22 0 0 0 chr21 23196326 23196348 -11711222 + AT_rich Low_complexity Low_complexity 1 22 0 619 291 26 5 chr21 23196348 23196537 -11711033 - MIR SINE MIR 0 262 70 1948 111 0 4 chr21 23197141 23197411 -11710159 + AluSg SINE Alu 42 310 0 213 240 10 50 chr21 23199457 23199557 -11708013 + A-rich Low_complexity Low_complexity 3 98 0 262 214 0 0 chr21 23200728 23200784 -11706786 - MIR SINE MIR -55 207 152 608 162 9 4 chr21 23200833 23200952 -11706618 + L1MC4 LINE L1 7869 8042 0 180 333 0 14 chr21 23200953 23201022 -11706548 + MIR SINE MIR 20 87 -175 217 299 0 26 chr21 23201096 23201173 -11706397 - MIR SINE MIR -100 162 88 454 78 13 13 chr21 23201566 23201643 -11705927 + (TCCA)n Simple_repeat Simple_repeat 3 79 0 318 292 45 45 chr21 23202975 23203129 -11704441 + L2 LINE L2 2211 2364 -950 1820 152 16 22 chr21 23205343 23205666 -11701904 - MER2 DNA MER2_type -23 321 1 23 0 0 0 chr21 23206417 23206440 -11701130 + AT_rich Low_complexity Low_complexity 1 23 0 805 200 13 13 chr21 23206443 23206598 -11700972 - MER106B DNA MER1_type -904 155 1 2251 61 0 55 chr21 23207987 23208299 -11699271 - AluY SINE Alu -16 295 1 459 35 0 0 chr21 23208985 23209042 -11698528 + (CA)n Simple_repeat Simple_repeat 2 58 0 350 269 23 23 chr21 23210061 23210191 -11697379 + MIR SINE MIR 133 262 0 189 0 0 0 chr21 23212459 23212480 -11695090 + (TG)n Simple_repeat Simple_repeat 1 21 0 2321 107 0 0 chr21 23212629 23212929 -11694641 - AluSg SINE Alu -10 300 1 2081 130 17 3 chr21 23215929 23216230 -11691340 - AluJb SINE Alu -7 305 1 1648 255 51 5 chr21 23216527 23216959 -11690611 + MLT1C LTR MaLR 16 467 0 189 0 0 0 chr21 23219056 23219077 -11688493 + (TC)n Simple_repeat Simple_repeat 2 22 0 2254 106 3 0 chr21 23219077 23219370 -11688200 - AluSq SINE Alu -19 294 1 1837 65 5 0 chr21 23220735 23220952 -11686618 - AluSq SINE Alu -95 218 1 348 24 0 0 chr21 23221606 23221647 -11685923 + (ATG)n Simple_repeat Simple_repeat 3 43 0 354 289 0 0 chr21 23221659 23221756 -11685814 - MIR SINE MIR -67 141 45 1603 219 94 5 chr21 23221769 23222193 -11685377 + MLT1C LTR MaLR 6 467 0 213 39 0 0 chr21 23222736 23222762 -11684808 + (A)n Simple_repeat Simple_repeat 1 26 0 1032 115 0 0 chr21 23223560 23223911 -11683659 + (CA)n Simple_repeat Simple_repeat 1 351 0 23 33 0 0 chr21 23224280 23224310 -11683260 + AT_rich Low_complexity Low_complexity 1 30 0 1511 99 17 3 chr21 23224380 23224612 -11682958 + L1MA2 LINE L1 6060 6288 -15 2128 128 0 0 chr21 23225497 23225801 -11681769 - AluJb SINE Alu -7 305 2 180 200 0 0 chr21 23225943 23225983 -11681587 + (TATATG)n Simple_repeat Simple_repeat 6 45 0 239 260 26 39 chr21 23226154 23226231 -11681339 - L3 LINE CR1 -2 1575 1500 2408 74 0 0 chr21 23228591 23228902 -11678668 - AluY SINE Alu 0 311 1 2521 68 0 0 chr21 23230290 23230601 -11676969 - AluY SINE Alu 0 311 1 395 143 0 82 chr21 23231251 23231349 -11676221 - L1MB7 LINE L1 0 6184 6095 261 83 0 0 chr21 23231370 23231406 -11676164 + (TA)n Simple_repeat Simple_repeat 1 36 0 305 264 28 38 chr21 23231423 23231529 -11676041 - L1MB5 LINE L1 -36 6138 6034 2445 231 46 8 chr21 23231539 23232169 -11675401 + L1 LINE L1 3966 4623 -1523 207 69 0 0 chr21 23232169 23232198 -11675372 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2445 231 46 8 chr21 23232198 23232225 -11675345 + L1 LINE L1 4623 4648 -1498 838 265 104 45 chr21 23232232 23232444 -11675126 + L2 LINE L2 2931 3175 -138 2096 103 0 0 chr21 23232444 23232789 -11674781 - AluSx SINE Alu 0 345 1 838 265 104 45 chr21 23232789 23232930 -11674640 + L2 LINE L2 3175 3306 -7 21 0 0 0 chr21 23235502 23235523 -11672047 + AT_rich Low_complexity Low_complexity 1 21 0 181 194 0 0 chr21 23236598 23236634 -11670936 + MIR SINE MIR 80 115 -147 188 321 0 0 chr21 23236683 23236736 -11670834 + L2 LINE L2 3210 3262 -10 816 214 132 10 chr21 23237055 23237344 -11670226 + MER33 DNA MER1_type 1 324 0 181 313 106 46 chr21 23237550 23237879 -11669691 + L2 LINE L2 2312 2660 -654 225 132 0 0 chr21 23238960 23238998 -11668572 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 228 292 34 34 chr21 23239892 23239981 -11667589 + MIR3 SINE MIR 73 161 -47 321 26 0 0 chr21 23240676 23240714 -11666856 + (CA)n Simple_repeat Simple_repeat 2 39 0 3095 127 6 68 chr21 23240753 23241296 -11666274 - MER75 DNA T2_type -5 509 1 1098 207 32 0 chr21 23242894 23243111 -11664459 - MER58A DNA MER1_type 0 224 1 1030 271 61 26 chr21 23243632 23244057 -11663513 + L1ME4a LINE L1 5481 5920 -201 249 279 58 70 chr21 23244432 23244604 -11662966 + MIR3 SINE MIR 7 176 -32 916 263 35 4 chr21 23245145 23245373 -11662197 + MIR SINE MIR 13 247 -15 673 284 38 38 chr21 23245745 23245984 -11661586 - MIR SINE MIR -10 252 14 207 0 0 0 chr21 23246943 23246966 -11660604 + (TG)n Simple_repeat Simple_repeat 2 24 0 227 100 0 75 chr21 23248035 23248075 -11659495 + MLT1J LTR MaLR 1 37 -353 1854 160 0 0 chr21 23248081 23248387 -11659183 - AluSx SINE Alu -6 306 1 861 183 39 7 chr21 23248437 23248590 -11658980 + MLT1C LTR MaLR 310 467 0 594 306 6 0 chr21 23248764 23248921 -11658649 - MER91A DNA MER1_type -38 158 1 632 249 127 5 chr21 23251201 23251390 -11656180 + MIR SINE MIR 28 239 -23 234 239 0 60 chr21 23251356 23251423 -11656147 + L2 LINE L2 3210 3272 0 1977 121 0 0 chr21 23252674 23252983 -11654587 + AluSq SINE Alu 1 309 0 1816 154 7 3 chr21 23253013 23253305 -11654265 - AluJb SINE Alu -19 293 1 236 158 26 40 chr21 23253963 23254040 -11653530 + (TTATA)n Simple_repeat Simple_repeat 1 75 0 1415 264 42 16 chr21 23254096 23254520 -11653050 + MLT1J LTR MaLR 69 503 -8 1037 271 49 27 chr21 23254893 23255258 -11652312 - MARNA DNA Mariner -195 391 19 25 31 0 0 chr21 23256582 23256614 -11650956 + AT_rich Low_complexity Low_complexity 1 32 0 590 170 0 0 chr21 23257404 23257498 -11650072 - MER5A DNA MER1_type -86 103 10 361 323 47 0 chr21 23258268 23258395 -11649175 + MER5A DNA MER1_type 57 189 0 653 191 0 32 chr21 23259950 23260076 -11647494 - MER20 DNA MER1_type -62 157 36 2331 88 0 0 chr21 23260123 23260428 -11647142 + AluY SINE Alu 1 305 -6 3723 155 29 25 chr21 23260625 23261128 -11646442 + L1MA8 LINE L1 4982 5490 -801 2268 84 3 0 chr21 23261128 23261425 -11646145 + AluSp SINE Alu 1 298 -15 3723 155 29 25 chr21 23261425 23261885 -11645685 + L1MA8 LINE L1 5490 5947 -344 655 215 4 8 chr21 23263002 23263247 -11644323 + (TCCA)n Simple_repeat Simple_repeat 1 243 0 475 311 43 12 chr21 23264133 23264294 -11643276 + MIR SINE MIR 4 169 -93 917 191 5 34 chr21 23264609 23264813 -11642757 + MER20 DNA MER1_type 22 219 0 530 283 24 47 chr21 23265239 23265451 -11642119 - MIR SINE MIR -51 211 2 514 317 21 42 chr21 23267653 23267893 -11639677 + MIR SINE MIR 28 262 0 465 316 67 11 chr21 23268141 23268327 -11639243 - MIR SINE MIR -53 155 15 378 0 0 0 chr21 23268634 23268676 -11638894 + (TC)n Simple_repeat Simple_repeat 2 43 0 306 0 0 0 chr21 23268675 23268709 -11638861 + (TG)n Simple_repeat Simple_repeat 1 34 0 201 39 0 0 chr21 23268708 23268734 -11638836 + (GA)n Simple_repeat Simple_repeat 1 26 0 336 222 46 23 chr21 23269333 23269423 -11638147 + MIR SINE MIR 31 123 -85 39 38 0 0 chr21 23269482 23269535 -11638035 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr21 23269948 23269970 -11637600 + AT_rich Low_complexity Low_complexity 1 22 0 2258 89 7 10 chr21 23270553 23270856 -11636714 + AluSc SINE Alu 1 302 -7 253 121 0 35 chr21 23271679 23271737 -11635833 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 418 232 86 60 chr21 23274455 23274606 -11632964 - MIR SINE MIR -2 260 106 1697 166 68 15 chr21 23275425 23275751 -11631819 + MLT1B LTR MaLR 1 343 -47 432 0 0 0 chr21 23277576 23277624 -11629946 + (CA)n Simple_repeat Simple_repeat 2 49 0 333 0 0 0 chr21 23277623 23277660 -11629910 + (TC)n Simple_repeat Simple_repeat 1 37 0 369 0 0 0 chr21 23280047 23280088 -11627482 + (CA)n Simple_repeat Simple_repeat 2 42 0 2498 58 0 0 chr21 23282565 23282858 -11624712 - AluY SINE Alu -18 293 1 421 233 218 23 chr21 23283063 23283196 -11624374 + MER5A DNA MER1_type 31 189 0 287 133 61 41 chr21 23285045 23285125 -11622445 + (TATATG)n Simple_repeat Simple_repeat 3 80 -22 189 0 0 0 chr21 23285125 23285146 -11622424 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3539 153 30 25 chr21 23285146 23285775 -11621795 - L1MB1 LINE L1 -9 6159 5528 287 133 61 41 chr21 23285775 23285791 -11621779 + (TATATG)n Simple_repeat Simple_repeat 79 102 0 229 150 0 0 chr21 23285791 23285831 -11621739 + L1MC4 LINE L1 6662 6701 -1341 213 39 0 0 chr21 23286548 23286574 -11620996 + (CA)n Simple_repeat Simple_repeat 2 27 0 201 195 0 0 chr21 23286575 23286616 -11620954 + (TATG)n Simple_repeat Simple_repeat 2 42 0 2198 119 3 3 chr21 23286802 23287105 -11620465 - AluSx SINE Alu -9 303 1 818 239 74 0 chr21 23287431 23287594 -11619976 - MER96 DNA MER1_type 0 175 1 276 305 116 11 chr21 23288098 23288193 -11619377 + L2 LINE L2 3168 3272 0 286 208 52 39 chr21 23288506 23288583 -11618987 + MLT1H LTR MaLR 263 340 -209 22 0 0 0 chr21 23289362 23289384 -11618186 + AT_rich Low_complexity Low_complexity 1 22 0 2777 143 89 7 chr21 23289388 23289848 -11617722 - L1PA16 LINE L1 -5 6161 5664 5694 185 18 7 chr21 23289849 23291329 -11616241 - L1PA16 LINE L1 -552 5614 4124 2112 199 24 24 chr21 23292499 23292956 -11614614 + L1MB4 LINE L1 5724 6180 0 801 89 0 0 chr21 23293526 23293650 -11613920 + (CA)n Simple_repeat Simple_repeat 2 125 0 591 209 76 25 chr21 23294489 23294505 -11613065 + MER53 DNA DNA 1 15 -174 204 40 0 0 chr21 23294505 23294530 -11613040 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 591 209 76 25 chr21 23294530 23294671 -11612899 + MER53 DNA DNA 15 166 -23 499 235 73 56 chr21 23294533 23294712 -11612858 - MER53 DNA DNA -7 182 1 214 304 0 0 chr21 23295814 23295870 -11611700 - L2 LINE L2 -1 3312 3257 657 268 47 5 chr21 23295879 23296069 -11611501 + MIR SINE MIR 1 198 -64 603 244 0 0 chr21 23296046 23296177 -11611393 + MIR SINE MIR 132 262 0 1907 166 18 94 chr21 23296518 23296952 -11610618 + MER57A LTR ERV1 3 403 0 2442 86 0 0 chr21 23297314 23297618 -11609952 + AluSg SINE Alu 1 304 -6 514 257 19 92 chr21 23298915 23299036 -11608534 - MIR SINE MIR -48 214 113 2292 94 7 3 chr21 23299036 23299333 -11608237 + AluSx SINE Alu 1 298 -14 514 257 19 92 chr21 23299333 23299417 -11608153 - MIR SINE MIR -149 113 24 2117 226 55 55 chr21 23300084 23300633 -11606937 - MLT1H LTR MaLR 0 549 1 1261 216 15 11 chr21 23302012 23302280 -11605290 + AluJo SINE Alu 14 282 -30 831 112 0 0 chr21 23302369 23302494 -11605076 + (TA)n Simple_repeat Simple_repeat 2 126 0 2180 193 43 23 chr21 23304226 23304667 -11602903 + MLT1D LTR MaLR 56 505 0 607 257 28 39 chr21 23306506 23306685 -11600885 - MER45A DNA AcHobo 0 178 2 423 0 0 0 chr21 23306804 23306851 -11600719 + (CA)n Simple_repeat Simple_repeat 2 48 0 305 284 28 46 chr21 23307372 23307481 -11600089 - MIR SINE MIR -57 151 45 1451 219 64 40 chr21 23308235 23308687 -11598883 - MLT1C LTR MaLR 0 467 5 2082 181 131 74 chr21 23309276 23309624 -11597946 + MER7C DNA MER2_type 12 405 -2623 1960 82 0 108 chr21 23309624 23309939 -11597631 - AluSc SINE Alu -3 306 26 2082 181 131 74 chr21 23309939 23310147 -11597423 + MER7C DNA MER2_type 405 600 -2 1936 161 33 25 chr21 23310190 23310557 -11597013 - MLT2C2 LTR ERVL -84 380 11 267 31 0 0 chr21 23310896 23310928 -11596642 + (CAA)n Simple_repeat Simple_repeat 2 33 0 290 302 0 0 chr21 23311084 23311170 -11596400 - L2 LINE L2 -542 2772 2687 2316 110 18 78 chr21 23312491 23312845 -11594725 - THE1C LTR MaLR 0 375 46 1928 128 39 0 chr21 23312845 23313126 -11594444 + AluSx SINE Alu 14 305 -7 2316 110 18 78 chr21 23313126 23313170 -11594400 - THE1C LTR MaLR -329 46 1 212 232 14 58 chr21 23313184 23313253 -11594317 + GA-rich Low_complexity Low_complexity 1 66 0 488 293 39 22 chr21 23313445 23313498 -11594072 + MLT1H1 LTR MaLR 1 52 -503 2336 144 50 26 chr21 23313498 23313920 -11593650 + MSTB1 LTR MaLR 1 432 0 488 293 39 22 chr21 23313920 23314047 -11593523 + MLT1H1 LTR MaLR 52 184 -371 251 203 16 0 chr21 23314582 23314646 -11592924 + (TA)n Simple_repeat Simple_repeat 2 66 0 595 265 59 10 chr21 23314879 23315083 -11592487 - MIR SINE MIR -1 261 48 623 286 65 10 chr21 23315356 23315555 -11592015 - MLT1I LTR MaLR 0 409 200 2678 109 70 5 chr21 23315581 23315983 -11591587 + MSTA LTR MaLR 1 428 0 339 25 0 0 chr21 23316447 23316487 -11591083 + (CA)n Simple_repeat Simple_repeat 1 40 0 1775 201 15 12 chr21 23317023 23317366 -11590204 - MER2 DNA MER2_type 0 344 1 356 249 70 88 chr21 23317734 23318120 -11589450 + L1ME3 LINE L1 4442 4820 -1326 1985 247 74 31 chr21 23318482 23319267 -11588303 + L1ME3 LINE L1 5270 6087 -75 29 0 0 0 chr21 23319690 23319719 -11587851 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr21 23320825 23320848 -11586722 + (T)n Simple_repeat Simple_repeat 1 23 0 3540 228 53 12 chr21 23322124 23323066 -11584504 - L1ME1 LINE L1 -5 6161 5188 366 23 0 0 chr21 23323067 23323110 -11584460 + (TC)n Simple_repeat Simple_repeat 2 44 0 848 207 0 0 chr21 23323113 23323258 -11584312 - AluJo SINE Alu -30 282 138 303 28 0 0 chr21 23323395 23323431 -11584139 + (TTTAA)n Simple_repeat Simple_repeat 5 40 0 2710 81 14 76 chr21 23323432 23323866 -11583704 - L1PA10 LINE L1 -20 6148 5742 767 220 8 0 chr21 23323869 23324001 -11583569 - AluJo SINE Alu -170 142 10 235 209 0 0 chr21 23324912 23324955 -11582615 + (CA)n Simple_repeat Simple_repeat 2 44 0 1800 176 48 20 chr21 23324991 23325093 -11582477 + MLT1A1 LTR MaLR 1 99 -266 2769 138 49 0 chr21 23325093 23325499 -11582071 - MSTB LTR MaLR 0 426 1 1800 176 48 20 chr21 23325499 23325749 -11581821 + MLT1A1 LTR MaLR 99 363 -2 211 342 154 27 chr21 23325864 23326013 -11581557 + L2 LINE L2 3102 3269 -3 311 83 83 0 chr21 23326349 23326397 -11581173 + MER66B LTR ERV1 295 346 -140 588 279 17 35 chr21 23327700 23327900 -11579670 - MIR SINE MIR -62 146 6 21 0 0 0 chr21 23328607 23328628 -11578942 + AT_rich Low_complexity Low_complexity 1 21 0 205 191 24 0 chr21 23329388 23329430 -11578140 + CT-rich Low_complexity Low_complexity 1 43 0 192 322 98 5 chr21 23330984 23331198 -11576372 + L2 LINE L2 1469 1702 -1612 22 35 0 0 chr21 23333901 23333930 -11573640 + AT_rich Low_complexity Low_complexity 1 29 0 3402 99 2 0 chr21 23334019 23334464 -11573106 - L1PA13 LINE L1 -19 6144 5699 803 124 16 0 chr21 23334465 23334586 -11572984 + L1PA13 LINE L1 5554 5676 -487 186 224 0 0 chr21 23334703 23334752 -11572818 + (TAG)n Simple_repeat Simple_repeat 1 49 0 341 409 0 0 chr21 23334765 23334914 -11572656 - L2 LINE L2 -8 3264 3116 564 257 115 58 chr21 23335081 23335234 -11572336 - MIR SINE MIR -2 260 88 2108 131 0 0 chr21 23335234 23335525 -11572045 - AluSx SINE Alu -21 291 1 564 257 115 58 chr21 23335525 23335597 -11571973 - MIR SINE MIR -174 88 22 1694 153 3 51 chr21 23335729 23336042 -11571528 - AluSx SINE Alu -12 300 3 354 74 0 0 chr21 23336816 23336870 -11570700 + (CAGCC)n Simple_repeat Simple_repeat 5 58 0 2245 102 3 13 chr21 23337182 23337495 -11570075 - AluSx SINE Alu -2 310 1 211 162 162 117 chr21 23337860 23337971 -11569599 + MIR SINE MIR 25 140 -122 336 279 27 27 chr21 23338067 23338178 -11569392 + L1MEd LINE L1 1070 1180 -5025 321 311 145 51 chr21 23338319 23338692 -11568878 + L1MEd LINE L1 1410 1817 -4579 217 309 59 0 chr21 23338940 23339008 -11568562 + MIR3 SINE MIR 91 162 -46 278 293 14 13 chr21 23339544 23339673 -11567897 - L1ME LINE L1 -276 5845 5714 345 267 73 68 chr21 23340002 23340208 -11567362 - MLT1L LTR MaLR 0 615 409 1860 198 43 55 chr21 23340335 23340804 -11566766 - MLT1C LTR MaLR -4 463 1 276 174 82 0 chr21 23341042 23341140 -11566430 + (TA)n Simple_repeat Simple_repeat 2 107 0 251 203 85 97 chr21 23342275 23342387 -11565183 - MIR SINE MIR -34 174 61 182 364 59 8 chr21 23342912 23343030 -11564540 + MIR3 SINE MIR 60 183 -25 1966 207 42 8 chr21 23343038 23343415 -11564155 + MLT1B LTR MaLR 1 390 0 424 271 94 28 chr21 23344089 23344270 -11563300 + L1ME LINE L1 5508 5700 -421 2318 95 23 0 chr21 23344701 23345005 -11562565 - AluY SINE Alu 0 311 1 2414 210 5 63 chr21 23345429 23345981 -11561589 - MLT2B1 LTR ERVL 0 520 1 259 292 0 0 chr21 23346369 23346458 -11561112 - L1MC4 LINE L1 -1340 6702 6614 369 197 0 0 chr21 23346458 23346534 -11561036 + (TA)n Simple_repeat Simple_repeat 2 77 0 402 197 66 8 chr21 23347080 23347234 -11560336 + MER20 DNA MER1_type 37 219 0 644 281 16 42 chr21 23347718 23347858 -11559712 + MIR SINE MIR 12 147 -115 2137 139 0 0 chr21 23347858 23348168 -11559402 + AluSg SINE Alu 1 310 0 644 281 16 42 chr21 23348168 23348219 -11559351 + MIR SINE MIR 147 198 -64 964 213 124 0 chr21 23348219 23348421 -11559149 - MER8 DNA MER2_type 0 239 13 27 0 0 0 chr21 23348452 23348479 -11559091 + AT_rich Low_complexity Low_complexity 1 27 0 192 382 46 8 chr21 23349761 23349892 -11557678 - MIR3 SINE MIR -62 146 11 969 189 11 5 chr21 23350336 23350526 -11557044 + L1PB1 LINE L1 3 193 -6670 14662 188 22 21 chr21 23350513 23354684 -11552886 + L1PB1 LINE L1 620 5034 -1833 2456 119 32 19 chr21 23354684 23355054 -11552516 - THE1C LTR MaLR 0 375 1 14662 188 22 21 chr21 23355054 23356889 -11550681 + L1PB1 LINE L1 5034 6864 -3 1802 186 28 28 chr21 23359243 23359604 -11547966 - MLT1A1 LTR MaLR 0 365 5 221 267 9 48 chr21 23361893 23361998 -11545572 + (TCCA)n Simple_repeat Simple_repeat 4 104 0 2288 102 0 7 chr21 23362224 23362527 -11545043 + AluSx SINE Alu 1 301 -11 974 116 7 13 chr21 23362810 23362965 -11544605 + AluSg/x SINE Alu 154 307 -3 348 248 29 29 chr21 23363304 23363409 -11544161 + MIR SINE MIR 45 149 -113 321 182 0 0 chr21 23363478 23363533 -11544037 + MER81 DNA DNA 4 58 -56 417 20 0 0 chr21 23364220 23364270 -11543300 + (TG)n Simple_repeat Simple_repeat 2 51 0 209 186 0 0 chr21 23364562 23364605 -11542965 + (TG)n Simple_repeat Simple_repeat 2 44 0 220 256 0 0 chr21 23364799 23364842 -11542728 + L2 LINE L2 3210 3252 -20 319 255 133 43 chr21 23367232 23367420 -11540150 + MER77 LTR ERV1 192 396 -209 447 284 42 26 chr21 23367422 23367612 -11539958 + MER68 LTR ERV1 364 556 -6 309 51 0 0 chr21 23367917 23367956 -11539614 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2265 174 48 41 chr21 23368011 23368444 -11539126 - MLT1C LTR MaLR -2 465 27 297 0 0 0 chr21 23368444 23368477 -11539093 + (TG)n Simple_repeat Simple_repeat 2 34 0 2265 174 48 41 chr21 23368477 23368504 -11539066 - MLT1C LTR MaLR -440 27 2 224 248 75 60 chr21 23368547 23368680 -11538890 + MIR SINE MIR 109 243 -19 2388 80 3 7 chr21 23370241 23370543 -11537027 - AluY SINE Alu -9 302 2 466 132 105 44 chr21 23370712 23370826 -11536744 + MER53 DNA DNA 63 183 -6 300 281 88 0 chr21 23371067 23371181 -11536389 + MIR SINE MIR 78 201 -61 2294 91 7 0 chr21 23371334 23371631 -11535939 - AluSx SINE Alu -13 299 1 224 299 21 90 chr21 23372159 23372303 -11535267 - MIR SINE MIR -22 240 107 244 311 17 3 chr21 23372306 23372403 -11535167 + MIR SINE MIR 8 105 -103 193 339 0 0 chr21 23372415 23372471 -11535099 + L3 LINE CR1 1516 1571 -6 767 204 29 6 chr21 23372791 23372963 -11534607 - MER5B DNA MER1_type 0 178 3 33 0 0 58 chr21 23373176 23373228 -11534342 + AT_rich Low_complexity Low_complexity 1 49 0 28 86 0 0 chr21 23373468 23373538 -11534032 + AT_rich Low_complexity Low_complexity 1 70 0 677 275 39 55 chr21 23373613 23373695 -11533875 + L1ME4a LINE L1 5531 5613 -508 2244 117 7 0 chr21 23373695 23374002 -11533568 - AluSx SINE Alu -3 309 1 677 275 39 55 chr21 23374002 23374304 -11533266 + L1ME4a LINE L1 5613 5909 -212 348 246 8 82 chr21 23374384 23374506 -11533064 + MER81 DNA DNA 1 113 -1 31 0 0 0 chr21 23374671 23374702 -11532868 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr21 23379668 23379692 -11527878 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1126 233 62 20 chr21 23380387 23380692 -11526878 + L1MD2 LINE L1 5850 6167 -192 848 185 37 56 chr21 23380710 23380926 -11526644 + L1MD3 LINE L1 7784 7995 0 469 288 81 23 chr21 23381998 23382325 -11525245 + L1MEc LINE L1 1064 1361 -5055 276 266 95 84 chr21 23382376 23382767 -11524803 + L1MEc LINE L1 1482 1876 -4731 306 209 23 23 chr21 23382778 23382864 -11524706 + L1MEc LINE L1 1769 1854 -4572 2265 128 0 0 chr21 23382971 23383275 -11524295 + AluSx SINE Alu 3 306 -6 756 280 14 14 chr21 23383688 23383906 -11523664 - MIR SINE MIR -42 220 3 276 314 36 14 chr21 23384075 23384215 -11523355 + L1ME LINE L1 5586 5728 -393 201 182 0 0 chr21 23384301 23384334 -11523236 + (TA)n Simple_repeat Simple_repeat 2 34 0 2352 77 0 3 chr21 23384632 23384930 -11522640 + AluY SINE Alu 5 301 -10 868 195 35 102 chr21 23385702 23385846 -11521724 + Charlie4a DNA MER1_type 46 198 -1763 1731 171 28 3 chr21 23385846 23386133 -11521437 + AluJb SINE Alu 1 294 -18 868 195 35 102 chr21 23386133 23386362 -11521208 + Charlie4a DNA MER1_type 198 373 -135 1227 211 27 40 chr21 23386389 23386688 -11520882 - MLT2D LTR ERVL -119 295 1 8242 152 39 19 chr21 23386688 23387517 -11520053 - ERVL-D LTR ERVL -7 5757 4887 2370 91 34 88 chr21 23387517 23387901 -11519669 + THE1B LTR MaLR 1 363 -1 8242 152 39 19 chr21 23387901 23388472 -11519098 - ERVL-D LTR ERVL -877 4887 4329 340 162 126 63 chr21 23388490 23388601 -11518969 + Charlie4a DNA MER1_type 277 394 -114 2113 128 0 31 chr21 23388616 23388962 -11518608 + AluSx SINE Alu 3 312 0 190 343 134 23 chr21 23389673 23389889 -11517681 - L2 LINE L2 -389 2925 2686 289 321 55 57 chr21 23389934 23390317 -11517253 - L2 LINE L2 -898 2416 2035 2470 77 3 0 chr21 23390425 23390764 -11516806 + AluSp SINE Alu 1 340 0 1088 170 13 57 chr21 23391572 23391801 -11515769 + MER20 DNA MER1_type 1 219 0 339 243 142 47 chr21 23392018 23392187 -11515383 + L2 LINE L2 3042 3226 -87 203 138 0 0 chr21 23392969 23392998 -11514572 + (TTTC)n Simple_repeat Simple_repeat 4 32 0 22 0 0 0 chr21 23393275 23393297 -11514273 + AT_rich Low_complexity Low_complexity 1 22 0 298 304 13 0 chr21 23393765 23393844 -11513726 - L2 LINE L2 -2 3311 3232 3523 181 24 2 chr21 23394158 23394789 -11512781 + L1MB5 LINE L1 5530 6174 0 2476 148 36 7 chr21 23394939 23395510 -11512060 - L1MA8 LINE L1 -10 6281 5655 397 221 0 16 chr21 23396285 23396407 -11511163 + GA-rich Low_complexity Low_complexity 1 120 0 1000 312 59 5 chr21 23397452 23397824 -11509746 - LTR16C LTR ERVL 0 491 100 365 209 186 0 chr21 23397990 23398076 -11509494 - MLT1B LTR MaLR -2 503 402 1249 181 7 44 chr21 23398119 23398389 -11509181 - MLT1B LTR MaLR -126 264 5 786 210 134 0 chr21 23399203 23399389 -11508181 - MER20 DNA MER1_type -6 213 3 216 245 38 0 chr21 23399502 23399555 -11508015 - L2 LINE L2 -86 3186 3132 1187 203 28 5 chr21 23399768 23399985 -11507585 + MER58A DNA MER1_type 3 224 0 323 318 37 47 chr21 23400998 23401061 -11506509 - MIR SINE MIR -50 212 150 2671 141 69 0 chr21 23401061 23401481 -11506089 + LTR47A LTR ERVL 1 449 -3 323 318 37 47 chr21 23401481 23401596 -11505974 - MIR SINE MIR -112 150 31 385 247 22 0 chr21 23402250 23402339 -11505231 + MLT1C LTR MaLR 1 91 -376 1124 231 44 41 chr21 23402341 23402661 -11504909 + MLT1A2 LTR MaLR 3 323 -51 348 138 238 12 chr21 23402680 23402760 -11504810 - L2 LINE L2 -4 3309 3212 616 290 83 28 chr21 23403130 23403382 -11504188 - L3 LINE CR1 -316 1261 996 195 69 0 0 chr21 23403415 23403444 -11504126 + (T)n Simple_repeat Simple_repeat 1 29 0 719 207 62 0 chr21 23403810 23403989 -11503581 + L1MEd LINE L1 5 194 -5925 2695 54 16 0 chr21 23404154 23404470 -11503100 - L1PA3 LINE L1 0 6155 5835 5409 19 0 0 chr21 23404470 23405173 -11502397 + L1PA3 LINE L1 5163 5865 -290 321 213 0 0 chr21 23405173 23405234 -11502336 + MLT1A2 LTR MaLR 326 386 -4 1138 236 73 41 chr21 23405238 23405607 -11501963 + MLT1C LTR MaLR 87 467 0 1959 189 108 36 chr21 23406549 23406572 -11500998 - MLT1D LTR MaLR 0 505 485 2169 157 33 30 chr21 23406572 23406935 -11500635 - THE1B LTR MaLR 0 364 1 1959 189 108 36 chr21 23406935 23407382 -11500188 - MLT1D LTR MaLR -20 485 1 257 326 58 42 chr21 23407915 23408105 -11499465 + L2 LINE L2 2151 2343 -971 181 0 0 65 chr21 23408854 23408885 -11498685 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 426 293 19 25 chr21 23409602 23409759 -11497811 + L1ME2 LINE L1 5979 6134 -30 232 184 81 35 chr21 23409959 23410046 -11497524 + L1MC5 LINE L1 7836 7926 -35 1644 131 54 13 chr21 23410607 23410905 -11496665 - L1MA9 LINE L1 0 6312 6003 494 195 70 47 chr21 23411253 23411381 -11496189 + MIR SINE MIR 77 207 -55 22 0 0 0 chr21 23411794 23411816 -11495754 + AT_rich Low_complexity Low_complexity 1 22 0 13786 78 13 1 chr21 23412831 23415491 -11492079 - L1PA7 LINE L1 0 6154 3486 976 246 62 12 chr21 23416427 23416667 -11490903 - MIR SINE MIR -1 261 10 638 292 38 10 chr21 23416796 23416899 -11490671 - MER58C DNA MER1_type -2205 215 116 2092 126 7 0 chr21 23416899 23417192 -11490378 - AluSx SINE Alu -17 295 1 638 292 38 10 chr21 23417192 23417297 -11490273 - MER58C DNA MER1_type -2304 116 1 622 327 49 0 chr21 23417837 23418060 -11489510 - MIR SINE MIR -28 234 1 252 279 15 0 chr21 23418476 23418544 -11489026 + MIR3 SINE MIR 125 193 -15 1228 36 0 0 chr21 23418861 23419000 -11488570 + L1PA5 LINE L1 6016 6154 0 264 30 0 0 chr21 23419070 23419103 -11488467 + (CA)n Simple_repeat Simple_repeat 2 34 0 252 219 27 0 chr21 23420119 23420192 -11487378 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 739 154 200 15 chr21 23420221 23420351 -11487219 - AluSg/x SINE Alu -17 293 140 231 154 26 0 chr21 23421383 23421422 -11486148 + MLT1L LTR MaLR 252 291 -324 28 0 0 0 chr21 23422456 23422484 -11485086 + AT_rich Low_complexity Low_complexity 1 28 0 499 368 74 25 chr21 23422738 23423143 -11484427 + L2 LINE L2 447 871 -2443 1829 140 41 89 chr21 23423960 23424354 -11483216 - THE1C LTR MaLR 0 375 1 354 334 84 52 chr21 23424710 23425435 -11482135 + L2 LINE L2 2040 2787 -527 264 170 0 0 chr21 23425723 23425776 -11481794 + (TA)n Simple_repeat Simple_repeat 2 54 0 2258 155 17 37 chr21 23426043 23426449 -11481121 + MSTB1 LTR MaLR 5 402 -30 309 284 32 11 chr21 23426452 23426547 -11481023 - L2 LINE L2 -26 3246 3150 305 293 26 17 chr21 23426618 23426734 -11480836 - L2 LINE L2 0 3313 3197 2552 221 19 56 chr21 23426938 23427509 -11480061 + MER68 LTR ERV1 13 562 0 315 0 0 0 chr21 23429095 23429130 -11478440 + (CA)n Simple_repeat Simple_repeat 2 36 0 822 223 0 0 chr21 23429933 23430063 -11477507 - AluJb SINE Alu -42 270 141 1629 169 7 27 chr21 23430070 23430371 -11477199 - AluJo SINE Alu -17 295 1 638 214 75 19 chr21 23431103 23431262 -11476308 - L2 LINE L2 0 3313 3146 207 174 0 43 chr21 23431283 23431329 -11476241 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 316 286 36 0 chr21 23431360 23431472 -11476098 - L2 LINE L2 -189 3124 3009 243 243 129 0 chr21 23431903 23431973 -11475597 - MIR SINE MIR -62 200 122 300 344 62 0 chr21 23432059 23432187 -11475383 + L2 LINE L2 3178 3313 0 951 233 45 5 chr21 23432281 23432504 -11475066 - MIR SINE MIR 0 262 31 537 192 59 64 chr21 23434553 23434740 -11472830 + MER53 DNA DNA 1 186 -3 214 167 0 0 chr21 23435100 23435136 -11472434 + GA-rich Low_complexity Low_complexity 2 37 0 414 0 0 0 chr21 23435735 23435781 -11471789 + (CA)n Simple_repeat Simple_repeat 2 47 0 810 173 14 9 chr21 23436673 23436890 -11470680 + CT-rich Low_complexity Low_complexity 1 218 0 319 303 98 8 chr21 23440759 23440881 -11466689 + L2 LINE L2 3181 3313 0 428 266 120 38 chr21 23441056 23441133 -11466437 + MLT1J LTR MaLR 14 83 -428 297 0 0 0 chr21 23441133 23441166 -11466404 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 428 266 120 38 chr21 23441166 23441246 -11466324 + MLT1J LTR MaLR 83 184 -327 350 306 25 51 chr21 23441387 23441583 -11465987 + MLT1J LTR MaLR 229 419 -92 541 266 159 79 chr21 23443592 23443995 -11463575 + L3 LINE CR1 942 1376 -201 207 0 0 0 chr21 23444871 23444894 -11462676 + (TA)n Simple_repeat Simple_repeat 1 23 0 1998 139 0 3 chr21 23446672 23446967 -11460603 - AluSq SINE Alu -19 294 1 255 241 76 13 chr21 23448746 23448825 -11458745 + L1MEd LINE L1 3 86 -6033 1479 278 65 71 chr21 23449003 23450044 -11457526 + L1MEd LINE L1 328 1411 -4870 2929 57 3 16 chr21 23450105 23450474 -11457096 + L1PA8 LINE L1 5808 6171 -1 395 291 87 12 chr21 23450746 23450918 -11456652 + L1MEd LINE L1 1514 1698 -4612 209 245 28 94 chr21 23451171 23451277 -11456293 - L2 LINE L2 -32 3281 3183 310 269 67 82 chr21 23452125 23452259 -11455311 + L2 LINE L2 3141 3272 0 225 0 0 0 chr21 23453444 23453469 -11454101 + (T)n Simple_repeat Simple_repeat 1 25 0 553 235 52 31 chr21 23453891 23454083 -11453487 - MIR SINE MIR -26 236 42 2235 113 0 28 chr21 23454609 23454927 -11452643 + AluSg SINE Alu 1 309 -1 339 294 59 15 chr21 23455243 23455379 -11452191 + L1ME LINE L1 5508 5649 -472 624 286 25 45 chr21 23455866 23456111 -11451459 - MIR SINE MIR -3 259 20 335 295 0 13 chr21 23457457 23457535 -11450035 - MER91A DNA MER1_type -119 77 1 233 294 110 37 chr21 23457654 23457790 -11449780 - MIR3 SINE MIR -62 146 1 2326 105 3 0 chr21 23458246 23458552 -11449018 + AluSp SINE Alu 1 307 -6 280 227 25 25 chr21 23458558 23458721 -11448849 + (TA)n Simple_repeat Simple_repeat 2 164 0 202 210 16 48 chr21 23458685 23458809 -11448761 + (TTTA)n Simple_repeat Simple_repeat 3 122 0 526 209 236 0 chr21 23459236 23459384 -11448186 + MER97c DNA MER1_type? 2 184 -906 991 187 15 39 chr21 23459394 23459597 -11447973 + MER58A DNA MER1_type 27 224 0 1006 148 56 15 chr21 23459597 23459791 -11447779 + MER97c DNA MER1_type? 197 398 -692 525 244 8 0 chr21 23459979 23460106 -11447464 + MER97c DNA MER1_type? 599 726 -364 2282 107 0 0 chr21 23460152 23460450 -11447120 + AluSx SINE Alu 1 298 -14 443 304 65 12 chr21 23461178 23461346 -11446224 + MER5A DNA MER1_type 8 184 -5 373 238 70 63 chr21 23461665 23461808 -11445762 - MIR SINE MIR -118 144 1 242 300 29 0 chr21 23462367 23462437 -11445133 + CT-rich Low_complexity Low_complexity 4 75 0 345 82 0 0 chr21 23462520 23462569 -11445001 + (TG)n Simple_repeat Simple_repeat 2 50 0 219 69 0 0 chr21 23466068 23466097 -11441473 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 950 226 46 94 chr21 23466118 23466492 -11441078 + MSTD LTR MaLR 1 357 -39 1876 114 20 61 chr21 23466492 23466676 -11440894 - AluSq SINE Alu 0 314 146 189 0 0 0 chr21 23466676 23466697 -11440873 + (TG)n Simple_repeat Simple_repeat 2 22 0 1876 114 20 61 chr21 23466697 23466838 -11440732 - AluSq SINE Alu -168 146 1 950 226 46 94 chr21 23466838 23466877 -11440693 + MSTD LTR MaLR 357 396 0 1675 137 150 0 chr21 23467146 23467439 -11440131 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr21 23469094 23469117 -11438453 + AT_rich Low_complexity Low_complexity 1 23 0 180 0 0 0 chr21 23470491 23470511 -11437059 + (T)n Simple_repeat Simple_repeat 1 20 0 1291 133 58 0 chr21 23470525 23470751 -11436819 - L1MB7 LINE L1 -19 6165 5927 23 0 0 0 chr21 23471186 23471209 -11436361 + AT_rich Low_complexity Low_complexity 1 23 0 43 20 0 0 chr21 23471221 23471271 -11436299 + AT_rich Low_complexity Low_complexity 1 50 0 616 258 47 41 chr21 23472525 23472866 -11434704 + L1ME4a LINE L1 5525 5867 -254 356 307 7 21 chr21 23474612 23474752 -11432818 - MER5B DNA MER1_type -40 138 1 501 235 71 93 chr21 23475877 23476060 -11431510 + MIR SINE MIR 65 243 -19 1714 180 27 121 chr21 23476801 23477357 -11430213 + MLT1D LTR MaLR 1 504 -1 324 0 0 0 chr21 23477422 23477458 -11430112 + (TAA)n Simple_repeat Simple_repeat 1 36 0 223 257 96 103 chr21 23477507 23477643 -11429927 - L2 LINE L2 -2 3270 3136 731 306 19 15 chr21 23477705 23477911 -11429659 - MIR SINE MIR -52 210 4 373 274 124 66 chr21 23478128 23478402 -11429168 - MLT1H LTR MaLR -26 523 234 337 283 50 8 chr21 23478548 23478668 -11428902 - MLT1H LTR MaLR -424 125 1 389 239 0 11 chr21 23478728 23478820 -11428750 + MER2 DNA MER2_type 2 92 -252 440 240 41 92 chr21 23479332 23479528 -11428042 - L2 LINE L2 0 3313 3128 2582 104 28 3 chr21 23480299 23480654 -11426916 + THE1B LTR MaLR 1 364 0 1463 169 64 41 chr21 23480654 23480997 -11426573 + MLT1A1 LTR MaLR 14 364 -1 284 309 83 24 chr21 23481100 23481268 -11426302 + MER5B DNA MER1_type 1 178 0 442 301 66 0 chr21 23481462 23481598 -11425972 - MIR SINE MIR -70 192 48 412 318 28 40 chr21 23482796 23482972 -11424598 - MIR SINE MIR -1 261 88 681 178 115 52 chr21 23482974 23483148 -11424422 + MER5A DNA MER1_type 3 187 -2 245 235 49 0 chr21 23483207 23483284 -11424286 - MIR SINE MIR -109 99 18 285 75 0 0 chr21 23484595 23484635 -11422935 + (TG)n Simple_repeat Simple_repeat 2 41 0 292 254 0 15 chr21 23488955 23489022 -11418548 - L2 LINE L2 -4 3309 3244 254 164 18 18 chr21 23489109 23489164 -11418406 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 368 328 50 46 chr21 23489325 23489584 -11417986 - L2 LINE L2 -438 2876 2617 2256 248 58 38 chr21 23489773 23490754 -11416816 + L1ME LINE L1 4 1004 -5066 566 269 82 47 chr21 23490864 23490914 -11416656 + L1ME LINE L1 1204 1251 -4829 1816 170 33 13 chr21 23490914 23491220 -11416350 + AluJb SINE Alu 1 312 0 566 269 82 47 chr21 23491220 23491425 -11416145 + L1ME LINE L1 1251 1468 -4612 239 311 0 0 chr21 23491428 23491534 -11416036 + L1ME LINE L1 1458 1563 -4517 370 306 20 24 chr21 23491611 23491859 -11415711 + L1ME LINE L1 1726 1972 -4289 321 313 43 0 chr21 23492414 23492529 -11415041 - L3 LINE CR1 -547 1030 911 1203 191 57 87 chr21 23494869 23494950 -11412620 + MLT1B LTR MaLR 1 83 -307 2316 87 0 29 chr21 23494950 23495261 -11412309 - AluY SINE Alu -7 304 3 1203 191 57 87 chr21 23495261 23495581 -11411989 + MLT1B LTR MaLR 83 390 0 2096 135 0 0 chr21 23495714 23496017 -11411553 + AluSx SINE Alu 1 303 -9 362 186 62 53 chr21 23497010 23497123 -11410447 + MIR SINE MIR 132 245 -17 2283 93 7 0 chr21 23497355 23497655 -11409915 - AluSq SINE Alu -11 302 1 956 256 36 11 chr21 23498325 23498602 -11408968 - MLT2D LTR ERVL -48 366 83 13787 37 1 4 chr21 23499855 23502313 -11405257 + L1PA5 LINE L1 3687 6151 -3 237 347 7 32 chr21 23504487 23504678 -11402892 + MIR SINE MIR 10 194 -62 921 285 64 21 chr21 23504675 23505050 -11402520 + L2 LINE L2 2433 2823 -491 717 267 109 42 chr21 23505100 23505459 -11402111 + L2 LINE L2 2930 3312 -1 811 270 0 6 chr21 23505516 23505690 -11401880 + MER5B DNA MER1_type 6 178 0 5271 190 49 40 chr21 23506282 23507515 -11400055 - Charlie1a DNA MER1_type -1311 1450 201 2310 110 3 0 chr21 23507515 23507816 -11399754 - AluSx SINE Alu -10 302 1 5271 190 49 40 chr21 23507816 23508019 -11399551 - Charlie1a DNA MER1_type -2560 201 1 1570 171 4 19 chr21 23508198 23508462 -11399108 + AluJo SINE Alu 1 260 -52 2372 247 38 23 chr21 23508650 23509471 -11398099 + L1M4 LINE L1 4028 4860 -1286 2173 104 0 0 chr21 23509589 23509904 -11397666 + AluY SINE Alu 3 317 0 1188 193 29 4 chr21 23509912 23510186 -11397384 - L1MB7 LINE L1 -28 6156 5876 283 183 33 0 chr21 23510569 23510629 -11396941 - MIR SINE MIR -62 146 85 24 32 0 0 chr21 23510873 23510904 -11396666 + AT_rich Low_complexity Low_complexity 1 31 0 2349 96 7 0 chr21 23511149 23511452 -11396118 - AluSx SINE Alu -7 305 1 1740 202 94 25 chr21 23511727 23512162 -11395408 + MLT1C LTR MaLR 2 466 -1 399 41 0 0 chr21 23512495 23512544 -11395026 + (TG)n Simple_repeat Simple_repeat 2 50 0 2046 132 10 3 chr21 23512595 23512932 -11394638 + AluSx SINE Alu 1 339 0 201 310 97 52 chr21 23514004 23514159 -11393411 + L2 LINE L2 2258 2419 -895 490 297 80 52 chr21 23514282 23514728 -11392842 + L2 LINE L2 2638 3097 -216 1806 233 42 61 chr21 23514789 23515289 -11392281 - L1ME3 LINE L1 -2 6160 5671 2431 49 0 16 chr21 23515289 23515593 -11391977 + AluY SINE Alu 13 311 0 1806 233 42 61 chr21 23515593 23515663 -11391907 - L1ME3 LINE L1 -491 5671 5601 476 295 25 0 chr21 23515704 23515826 -11391744 + L2 LINE L2 3139 3263 -9 1890 119 8 0 chr21 23515855 23516123 -11391447 - AluSq SINE Alu -11 302 33 2396 218 41 64 chr21 23516843 23517019 -11390551 + MLT1E LTR MaLR 1 180 -413 2084 129 0 3 chr21 23517019 23517335 -11390235 + AluSc SINE Alu 1 309 0 2396 218 41 64 chr21 23517335 23517765 -11389805 + MLT1E LTR MaLR 180 593 0 2233 135 10 21 chr21 23517809 23518309 -11389261 - L1MA6 LINE L1 -663 5628 5135 4151 162 13 1 chr21 23518309 23518962 -11388608 + L1MA6 LINE L1 5619 6300 0 21 71 0 0 chr21 23519268 23519310 -11388260 + AT_rich Low_complexity Low_complexity 1 42 0 523 209 194 0 chr21 23521240 23521379 -11386191 + MLT1I LTR MaLR 1 166 -243 372 223 97 0 chr21 23521466 23521569 -11386001 + MLT1I LTR MaLR 297 409 0 968 263 20 33 chr21 23521910 23522362 -11385208 + L1MD3 LINE L1 6772 7413 -582 2188 225 24 48 chr21 23522387 23522970 -11384600 + L1MD3 LINE L1 7422 7990 -5 412 295 87 11 chr21 23525414 23525597 -11381973 - MIR SINE MIR 0 262 66 1736 211 107 23 chr21 23525848 23526279 -11381291 + MLT2B1 LTR ERVL 8 474 -46 279 179 0 0 chr21 23526282 23526349 -11381221 + (CA)n Simple_repeat Simple_repeat 2 68 0 272 120 78 24 chr21 23526349 23526407 -11381163 + MLT2C2 LTR ERVL 412 464 0 2814 95 17 0 chr21 23526807 23527165 -11380405 + THE1B LTR MaLR 1 364 0 261 0 0 0 chr21 23527375 23527404 -11380166 + (CA)n Simple_repeat Simple_repeat 1 29 0 1218 221 24 8 chr21 23527408 23527735 -11379835 + MLT1A2 LTR MaLR 4 390 0 195 100 0 0 chr21 23527786 23527816 -11379754 + (CA)n Simple_repeat Simple_repeat 1 30 0 316 296 0 0 chr21 23527853 23527951 -11379619 + (CA)n Simple_repeat Simple_repeat 2 99 0 253 269 11 65 chr21 23528758 23528851 -11378719 + MIR SINE MIR 2 89 -173 1484 231 34 47 chr21 23528851 23529297 -11378273 + MLT1C LTR MaLR 1 440 -27 209 256 0 0 chr21 23529461 23529504 -11378066 + L2 LINE L2 3214 3256 -16 546 282 6 12 chr21 23530450 23530613 -11376957 + MLT1F1 LTR MaLR 1 162 -431 1040 250 43 16 chr21 23530706 23530962 -11376608 + MLT1F1 LTR MaLR 305 567 0 2536 75 0 0 chr21 23531500 23531808 -11375762 + AluY SINE Alu 1 308 -3 26 0 0 0 chr21 23531980 23532006 -11375564 + AT_rich Low_complexity Low_complexity 1 26 0 2346 123 41 16 chr21 23532402 23532768 -11374802 + THE1C LTR MaLR 1 375 0 2615 111 5 16 chr21 23533411 23533790 -11373780 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr21 23534658 23534685 -11372885 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr21 23534759 23534785 -11372785 + AT_rich Low_complexity Low_complexity 1 26 0 254 417 29 7 chr21 23534922 23535061 -11372509 + L2 LINE L2 3117 3258 -14 267 31 0 0 chr21 23535190 23535222 -11372348 + (TG)n Simple_repeat Simple_repeat 1 32 0 626 214 32 32 chr21 23535563 23535739 -11371831 - MLT1H1 LTR MaLR -1 554 411 257 200 31 0 chr21 23535785 23535850 -11371720 + CT-rich Low_complexity Low_complexity 5 71 0 816 246 45 38 chr21 23535889 23536153 -11371417 - MLT1H1 LTR MaLR -289 266 1 2189 115 20 0 chr21 23537191 23537487 -11370083 + AluSx SINE Alu 1 302 -10 294 106 0 0 chr21 23538065 23538112 -11369458 + (TG)n Simple_repeat Simple_repeat 1 47 0 2018 217 32 34 chr21 23538448 23538946 -11368624 - MLT1D LTR MaLR -8 497 1 353 275 90 69 chr21 23538946 23539135 -11368435 + MLT1J2 LTR MaLR 253 445 -5 2581 191 106 110 chr21 23540669 23541262 -11366308 - L1MC3 LINE L1 0 7785 7115 339 169 12 60 chr21 23541262 23541345 -11366225 - MLT1F1 LTR MaLR -442 125 47 2581 191 106 110 chr21 23541345 23541693 -11365877 - L1MC3 LINE L1 -670 7115 6767 646 225 14 7 chr21 23542080 23542218 -11365352 + MLT2B1 LTR ERVL 59 197 -323 295 213 32 53 chr21 23542198 23542292 -11365278 - MLT1H LTR MaLR -42 584 493 453 256 55 63 chr21 23542678 23542932 -11364638 - MLT1H LTR MaLR -42 507 256 202 234 0 0 chr21 23543140 23543187 -11364383 + (TTA)n Simple_repeat Simple_repeat 1 47 0 1058 259 54 51 chr21 23543200 23543570 -11364000 + MLT1J2 LTR MaLR 80 450 0 2291 68 37 10 chr21 23544006 23544301 -11363269 + AluY SINE Alu 1 303 -8 1254 182 4 13 chr21 23544513 23544738 -11362832 - L1MC1 LINE L1 0 6333 6111 2362 73 0 13 chr21 23545346 23545646 -11361924 + L1PA8 LINE L1 5870 6165 -7 1129 196 10 5 chr21 23548762 23548966 -11358604 - MER3 DNA MER1_type -4 205 1 249 302 23 12 chr21 23548968 23549054 -11358516 + L2 LINE L2 3191 3277 -36 409 274 61 98 chr21 23549142 23549419 -11358151 - L2 LINE L2 0 3272 3006 373 291 43 67 chr21 23549499 23549885 -11357685 - L2 LINE L2 -270 3002 2548 186 259 69 0 chr21 23550274 23550332 -11357238 + L2 LINE L2 3251 3312 -1 275 304 10 20 chr21 23553098 23553200 -11354370 - L2 LINE L2 -239 3033 2933 582 263 26 42 chr21 23553300 23553490 -11354080 - MIR SINE MIR -55 207 21 728 227 13 76 chr21 23553641 23553866 -11353704 + MER20 DNA MER1_type 3 213 -6 1413 233 56 17 chr21 23558039 23558451 -11349119 + L1MB8 LINE L1 5739 6166 -12 479 188 0 0 chr21 23559066 23559151 -11348419 - L2 LINE L2 -2 3270 3186 370 278 42 78 chr21 23559432 23559623 -11347947 + MLT1J2 LTR MaLR 267 450 0 21 0 0 0 chr21 23560361 23560382 -11347188 + AT_rich Low_complexity Low_complexity 1 21 0 418 170 63 24 chr21 23561420 23561566 -11346004 - L1ME3A LINE L1 -202 5960 5813 2179 161 19 40 chr21 23561868 23562291 -11345279 + MLT2D LTR ERVL 1 414 0 264 296 76 15 chr21 23562294 23562426 -11345144 - MER117 DNA MER1_type -31 166 27 1171 164 5 27 chr21 23562448 23562668 -11344902 + MER20 DNA MER1_type 1 215 -4 194 236 36 0 chr21 23565126 23565181 -11342389 - MIR SINE MIR -187 75 19 365 324 63 57 chr21 23565334 23565667 -11341903 - L2 LINE L2 -8 3305 2971 26 30 0 0 chr21 23565668 23565701 -11341869 + AT_rich Low_complexity Low_complexity 1 33 0 1394 209 26 98 chr21 23566366 23566864 -11340706 + MLT1C LTR MaLR 6 467 0 1676 109 11 34 chr21 23566967 23567255 -11340315 - AluSg SINE Alu 0 310 26 281 262 54 20 chr21 23567480 23567629 -11339941 - MER20B DNA MER1_type -630 154 1 535 124 67 0 chr21 23569106 23569195 -11338375 - L1PA16 LINE L1 -289 5877 5783 610 176 0 2 chr21 23569252 23569263 -11338307 - L1PA16 LINE L1 -365 5789 5779 186 43 0 0 chr21 23569263 23569286 -11338284 + (TG)n Simple_repeat Simple_repeat 2 24 0 610 176 0 2 chr21 23569286 23569397 -11338173 - L1PA16 LINE L1 -375 5779 5670 769 208 111 54 chr21 23569396 23569675 -11337895 + L1PB4 LINE L1 5859 6153 -3 209 188 62 36 chr21 23571146 23571258 -11336312 + (TATAA)n Simple_repeat Simple_repeat 4 118 0 798 230 74 7 chr21 23571489 23571923 -11335647 - MLT1D LTR MaLR 0 505 13 862 246 91 74 chr21 23572987 23573515 -11334055 - MER34 LTR ERV1 -5 537 1 1344 243 47 27 chr21 23574558 23574962 -11332608 - MLT1E3 LTR MaLR -5 619 208 983 277 96 28 chr21 23576838 23577381 -11330189 + L2 LINE L2 2397 3050 -263 1049 137 10 54 chr21 23577381 23577586 -11329984 - L1PB4 LINE L1 -7 6149 5954 983 277 96 28 chr21 23577586 23577844 -11329726 + L2 LINE L2 3050 3289 -24 855 0 0 0 chr21 23578705 23578800 -11328770 + (CTATT)n Simple_repeat Simple_repeat 3 97 0 1339 210 69 28 chr21 23580657 23581047 -11326523 - L1MC3 LINE L1 -16 7769 7364 235 202 60 36 chr21 23581346 23581430 -11326140 - MLT1J LTR MaLR -4 507 422 829 244 30 9 chr21 23581531 23581761 -11325809 - MLT1J2 LTR MaLR -214 236 2 1166 214 85 56 chr21 23583506 23583955 -11323615 + MLT1C LTR MaLR 6 467 0 2489 167 14 14 chr21 23584018 23584520 -11323050 - L1MB3 LINE L1 -3 6180 5679 1846 142 90 17 chr21 23584917 23585263 -11322307 + THE1C LTR MaLR 5 375 0 277 258 38 53 chr21 23585400 23585532 -11322038 + MER94 DNA DNA 2 131 -3 259 271 0 0 chr21 23587000 23587059 -11320511 - L2 LINE L2 -3 3269 3211 1665 202 11 25 chr21 23587555 23587917 -11319653 + MLT1A2 LTR MaLR 18 374 0 255 213 13 13 chr21 23588270 23588345 -11319225 - MER116 DNA Mariner 0 80 6 228 111 0 0 chr21 23588999 23589035 -11318535 + (CA)n Simple_repeat Simple_repeat 2 37 0 38 0 0 0 chr21 23589156 23589194 -11318376 + AT_rich Low_complexity Low_complexity 1 38 0 992 182 24 0 chr21 23589399 23589646 -11317924 - MER33 DNA MER1_type -22 302 50 257 237 66 0 chr21 23589949 23590025 -11317545 + L1MA10 LINE L1 6246 6326 -8 566 28 14 0 chr21 23590213 23590285 -11317285 + (TC)n Simple_repeat Simple_repeat 2 74 0 807 197 111 0 chr21 23590953 23591151 -11316419 + MER58 DNA MER1_type 1 220 -121 282 214 0 0 chr21 23591172 23591228 -11316342 + MER58 DNA MER1_type 2365 2420 0 457 324 58 21 chr21 23591264 23591505 -11316065 - MIR SINE MIR 0 262 13 543 241 116 39 chr21 23592108 23592419 -11315151 + L1ME4a LINE L1 5611 5945 -176 219 238 24 24 chr21 23592555 23592639 -11314931 + T-rich Low_complexity Low_complexity 6 89 0 2310 190 22 2 chr21 23593272 23593730 -11313840 + MLT1C LTR MaLR 1 467 0 215 171 0 86 chr21 23593909 23593979 -11313591 + (CCCA)n Simple_repeat Simple_repeat 4 67 0 2288 92 44 0 chr21 23594024 23594318 -11313252 - AluSc SINE Alu -2 307 1 1842 100 0 4 chr21 23594724 23594963 -11312607 - AluSq SINE Alu -18 295 58 27 82 0 20 chr21 23595519 23595585 -11311985 + AT_rich Low_complexity Low_complexity 1 66 -30 2096 136 3 0 chr21 23595585 23595879 -11311691 - AluSx SINE Alu -17 295 1 27 82 0 20 chr21 23595879 23595910 -11311660 + AT_rich Low_complexity Low_complexity 66 96 0 357 351 32 70 chr21 23598659 23598975 -11308595 - L2 LINE L2 0 3272 2969 624 199 0 8 chr21 23599112 23599243 -11308327 + MSTD LTR MaLR 1 130 -266 26 0 0 0 chr21 23600185 23600211 -11307359 + AT_rich Low_complexity Low_complexity 1 26 0 219 173 0 19 chr21 23600512 23600564 -11307006 + A-rich Low_complexity Low_complexity 6 56 0 249 317 55 62 chr21 23600820 23600965 -11306605 - L2 LINE L2 -2 3311 3168 397 172 108 0 chr21 23601081 23601174 -11306396 + MER20B DNA MER1_type 117 219 0 47 33 0 0 chr21 23602887 23602948 -11304622 + AT_rich Low_complexity Low_complexity 1 61 0 254 186 23 79 chr21 23602951 23603128 -11304442 + (TTATA)n Simple_repeat Simple_repeat 3 169 0 380 286 71 68 chr21 23604135 23604401 -11303169 + L1ME4a LINE L1 5682 5948 -173 181 347 28 0 chr21 23605703 23605775 -11301795 + MIR SINE MIR 66 139 -123 2994 153 32 18 chr21 23605902 23606288 -11301282 - L1MB1 LINE L1 -5 6163 5765 2195 136 0 3 chr21 23606288 23606590 -11300980 - AluSx SINE Alu -11 301 1 2994 153 32 18 chr21 23606590 23606766 -11300804 - L1MB1 LINE L1 -403 5765 5593 31 96 0 0 chr21 23607145 23607239 -11300331 + AT_rich Low_complexity Low_complexity 1 94 0 1687 182 7 23 chr21 23609585 23609893 -11297677 - AluJo SINE Alu -9 303 1 916 176 33 16 chr21 23610178 23610360 -11297210 + MER53 DNA DNA 2 186 -3 3029 69 17 0 chr21 23610522 23610884 -11296686 + L1PA7 LINE L1 5771 6138 -16 28 0 0 0 chr21 23610884 23610912 -11296658 + AT_rich Low_complexity Low_complexity 1 28 0 644 111 41 0 chr21 23610912 23611083 -11296487 + (TA)n Simple_repeat Simple_repeat 1 178 0 1019 231 59 0 chr21 23611416 23611654 -11295916 - MIR SINE MIR -5 257 6 2200 101 3 7 chr21 23612323 23612621 -11294949 + AluSq SINE Alu 2 298 -15 250 289 94 31 chr21 23615663 23615735 -11291835 - MIR SINE MIR -70 192 126 2070 121 7 16 chr21 23615735 23616042 -11291528 + AluSg SINE Alu 1 304 -6 250 289 94 31 chr21 23616042 23616097 -11291473 - MIR SINE MIR -136 126 57 1944 58 0 4 chr21 23616183 23616426 -11291144 + AluY SINE Alu 67 308 -3 227 407 37 0 chr21 23616571 23616706 -11290864 + L3 LINE CR1 241 380 -1197 306 303 57 63 chr21 23616930 23617105 -11290465 - L3 LINE CR1 -172 1405 1232 2335 274 57 57 chr21 23617283 23618799 -11288771 - L1MEc LINE L1 -3914 2482 968 24 0 0 0 chr21 23619746 23619770 -11287800 + AT_rich Low_complexity Low_complexity 1 24 0 2336 147 92 18 chr21 23622100 23622535 -11285035 + MLT1C LTR MaLR 1 467 0 2419 94 0 0 chr21 23623260 23623568 -11284002 - AluSg SINE Alu -2 308 1 2935 113 21 37 chr21 23623806 23624241 -11283329 + MSTC LTR MaLR 1 428 0 1199 240 48 80 chr21 23624610 23625249 -11282321 + MLT1E3 LTR MaLR 1 623 -1 895 192 28 6 chr21 23625298 23625480 -11282090 + L1MB4 LINE L1 5967 6152 -28 450 53 0 0 chr21 23625482 23625539 -11282031 + (TA)n Simple_repeat Simple_repeat 2 58 0 1203 67 0 0 chr21 23625539 23625688 -11281882 - AluY SINE Alu -13 298 150 50 0 0 0 chr21 23625855 23625905 -11281665 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr21 23626760 23626782 -11280788 + AT_rich Low_complexity Low_complexity 1 22 0 338 250 62 54 chr21 23626901 23627013 -11280557 - MIR SINE MIR -132 130 18 2509 51 0 0 chr21 23627082 23627375 -11280195 - AluY SINE Alu -18 293 1 21 0 0 0 chr21 23627806 23627827 -11279743 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr21 23627883 23627908 -11279662 + AT_rich Low_complexity Low_complexity 1 25 0 1709 189 32 30 chr21 23629540 23629911 -11277659 + MER96B DNA MER1_type? 7 378 -39 1041 196 0 0 chr21 23631257 23631436 -11276134 - FRAM SINE Alu -1 175 1 1267 206 38 88 chr21 23632860 23633089 -11274481 - MLT1B LTR MaLR -12 378 176 405 0 0 0 chr21 23633089 23633134 -11274436 + (TG)n Simple_repeat Simple_repeat 1 45 0 1267 206 38 88 chr21 23633134 23633302 -11274268 - MLT1B LTR MaLR -214 176 1 301 165 101 13 chr21 23634124 23634203 -11273367 - MER81 DNA DNA -17 97 12 231 88 0 0 chr21 23636776 23636810 -11270760 + (TC)n Simple_repeat Simple_repeat 2 35 0 678 200 16 0 chr21 23638185 23638310 -11269260 - MER20 DNA MER1_type 0 219 93 250 279 0 0 chr21 23638865 23638926 -11268644 + CT-rich Low_complexity Low_complexity 3 63 0 4759 61 2 5 chr21 23639055 23639626 -11267944 - L1PA7 LINE L1 -1 6153 5585 237 224 0 0 chr21 23639742 23639800 -11267770 + (CA)n Simple_repeat Simple_repeat 1 58 0 231 213 0 0 chr21 23640236 23640283 -11267287 + L2 LINE L2 3210 3256 -16 211 50 38 75 chr21 23640879 23640959 -11266611 + (TTAA)n Simple_repeat Simple_repeat 4 80 0 3254 38 5 0 chr21 23641125 23641496 -11266074 - L1PA4 LINE L1 0 6155 5783 2048 89 0 11 chr21 23642085 23642354 -11265216 + AluSx SINE Alu 1 266 -46 208 340 20 20 chr21 23643095 23643195 -11264375 - MIR SINE MIR -65 143 44 2186 122 7 0 chr21 23643265 23643567 -11264003 - AluSx SINE Alu -8 304 1 202 307 0 13 chr21 23643846 23643921 -11263649 + GA-rich Low_complexity Low_complexity 2 75 0 507 283 80 35 chr21 23644271 23644497 -11263073 + L1MC4 LINE L1 6500 6735 -1307 1069 177 160 105 chr21 23644499 23644931 -11262639 + MER4C LTR ERV1 1 654 -10 3155 243 65 41 chr21 23644934 23646093 -11261477 + L1MC4 LINE L1 6732 7918 -124 376 164 90 0 chr21 23647797 23647864 -11259706 + MER5A DNA MER1_type 2 74 -115 2441 116 9 3 chr21 23647864 23648209 -11259361 - L1PA13 LINE L1 -200 5968 5622 1239 117 34 0 chr21 23648209 23648383 -11259187 + L1PA13 LINE L1 5979 6163 0 393 184 58 11 chr21 23648384 23648471 -11259099 + MER5A DNA MER1_type 61 151 -38 492 161 102 15 chr21 23648722 23648859 -11258711 - MER96B DNA MER1_type? -19 398 250 1644 160 0 35 chr21 23649437 23649719 -11257851 + AluJo SINE Alu 2 273 -39 2099 156 16 96 chr21 23649877 23649968 -11257602 - MLT2D LTR ERVL 0 414 317 698 87 10 0 chr21 23649968 23650071 -11257499 + (TAGA)n Simple_repeat Simple_repeat 3 106 0 2099 156 16 96 chr21 23650071 23650427 -11257143 - MLT2D LTR ERVL -97 317 3 417 322 75 28 chr21 23650625 23650839 -11256731 - L1MC/D LINE L1 -2125 5683 5460 2506 161 26 12 chr21 23651176 23651592 -11255978 - MSTB LTR MaLR -4 422 1 422 331 136 0 chr21 23651647 23651831 -11255739 - MIR SINE MIR -29 233 25 2477 157 50 33 chr21 23652940 23653118 -11254452 + MLT1C LTR MaLR 1 174 -293 1668 192 0 17 chr21 23653118 23653415 -11254155 + AluJo SINE Alu 5 296 -16 2477 157 50 33 chr21 23653415 23653695 -11253875 + MLT1C LTR MaLR 174 467 0 2535 71 0 0 chr21 23654859 23655116 -11252454 + AluY SINE Alu 1 311 0 24 0 0 0 chr21 23655146 23655170 -11252400 + AT_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr21 23655224 23655244 -11252326 + (TTG)n Simple_repeat Simple_repeat 2 21 0 25 0 0 0 chr21 23655898 23655923 -11251647 + AT_rich Low_complexity Low_complexity 1 25 0 23 68 0 0 chr21 23656175 23656219 -11251351 + AT_rich Low_complexity Low_complexity 1 44 0 28 0 0 0 chr21 23657787 23657815 -11249755 + AT_rich Low_complexity Low_complexity 1 28 0 1076 193 106 0 chr21 23658069 23658344 -11249226 - L1MC4 LINE L1 0 8042 7739 2221 145 0 0 chr21 23659493 23659797 -11247773 - AluSx SINE Alu -8 304 1 421 222 61 0 chr21 23659821 23659920 -11247650 + MER5A DNA MER1_type 9 113 -76 807 187 44 6 chr21 23660140 23660322 -11247248 + MER53 DNA DNA 1 189 0 423 145 38 38 chr21 23660458 23660589 -11246981 + CT-rich Low_complexity Low_complexity 3 133 0 682 260 18 59 chr21 23661906 23662179 -11245391 + MER34 LTR ERV1 1 262 -280 235 77 0 115 chr21 23662180 23662232 -11245338 - MLT2A1 LTR ERVL 0 444 399 15203 76 2 4 chr21 23662243 23664300 -11243270 - HERVL-A1 LTR ERVL -3601 2053 1 3395 75 9 0 chr21 23664313 23664752 -11242818 - MLT2A1 LTR ERVL -1 443 1 608 188 82 82 chr21 23664776 23665058 -11242512 + MER34 LTR ERV1 261 542 0 341 245 98 43 chr21 23666192 23666376 -11241194 - L1MC5 LINE L1 -460 7501 7308 895 179 46 70 chr21 23666545 23666874 -11240696 - L1MC5 LINE L1 -733 7228 6908 1399 169 0 25 chr21 23666874 23667111 -11240459 - AluJo SINE Alu -11 301 71 714 229 34 73 chr21 23667155 23667503 -11240067 - L1MC4 LINE L1 -977 6831 6562 1327 256 46 15 chr21 23668033 23668443 -11239127 - L1MC4 LINE L1 -1878 5930 5508 348 287 106 0 chr21 23669140 23669234 -11238336 - MIR SINE MIR -67 141 38 445 359 43 21 chr21 23669541 23669775 -11237795 - MIR SINE MIR -6 256 18 372 281 79 94 chr21 23669978 23670444 -11237126 + L2 LINE L2 2814 3272 -41 2132 142 3 0 chr21 23670776 23671079 -11236491 - AluSx SINE Alu -8 304 1 866 158 82 18 chr21 23672209 23672380 -11235190 - MER5A DNA MER1_type -5 184 3 198 0 0 0 chr21 23673222 23673244 -11234326 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 249 222 21 28 chr21 23674560 23674704 -11232866 + CT-rich Low_complexity Low_complexity 2 144 0 1580 178 90 44 chr21 23675425 23675693 -11231877 - MLT1C LTR MaLR 0 467 172 1986 149 0 19 chr21 23675693 23676009 -11231561 - AluSx SINE Alu -2 310 1 1580 178 90 44 chr21 23676009 23676150 -11231420 - MLT1C LTR MaLR -295 172 39 270 0 0 0 chr21 23676150 23676180 -11231390 + (TA)n Simple_repeat Simple_repeat 2 31 0 1131 73 0 27 chr21 23676208 23676358 -11231212 - AluSp SINE Alu -167 146 1 1671 143 53 50 chr21 23677026 23677327 -11230243 - AluSx SINE Alu -10 302 1 1387 192 13 23 chr21 23679405 23679707 -11227863 - MER21B LTR ERV1 -162 701 403 548 152 30 0 chr21 23679771 23679870 -11227700 - MLT1D LTR MaLR 0 505 404 2394 156 21 16 chr21 23679874 23680298 -11227272 - MSTB LTR MaLR 0 426 1 2543 146 65 7 chr21 23680312 23680758 -11226812 - MSTB-int LTR MaLR -14 1637 1166 5434 189 22 0 chr21 23680758 23681787 -11225783 - MSTB-int LTR MaLR -599 1052 1 2158 153 18 83 chr21 23681787 23682243 -11225327 - MSTB LTR MaLR 0 426 1 902 243 61 61 chr21 23682270 23682616 -11224954 - MLT1D LTR MaLR -159 346 1 1720 172 10 3 chr21 23683257 23683554 -11224016 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr21 23683870 23683894 -11223676 + AT_rich Low_complexity Low_complexity 1 24 0 2232 113 3 0 chr21 23684756 23685057 -11222513 + AluSp SINE Alu 8 309 -4 301 321 41 4 chr21 23685083 23685326 -11222244 + L1MC/D LINE L1 2917 3168 -2978 370 264 43 29 chr21 23685327 23685467 -11222103 + L1MC/D LINE L1 3176 3317 -2829 24 53 0 0 chr21 23686259 23686297 -11221273 + AT_rich Low_complexity Low_complexity 1 38 0 188 323 10 30 chr21 23687196 23687295 -11220275 - MIR SINE MIR -63 199 103 22 56 0 0 chr21 23687909 23687945 -11219625 + AT_rich Low_complexity Low_complexity 1 36 0 223 333 14 0 chr21 23689135 23689207 -11218363 - MER5A DNA MER1_type -11 178 106 597 267 130 8 chr21 23689921 23690183 -11217387 + L1MC/D LINE L1 5351 5644 -2164 2339 92 3 0 chr21 23690313 23690616 -11216954 + AluSc SINE Alu 1 304 -5 1591 195 14 10 chr21 23692752 23693049 -11214521 + AluJo SINE Alu 1 298 -14 306 194 0 0 chr21 23693346 23693408 -11214162 + (CATA)n Simple_repeat Simple_repeat 3 64 0 787 206 93 0 chr21 23693436 23693630 -11213940 + MER20 DNA MER1_type 1 212 -7 2255 118 25 27 chr21 23693843 23694208 -11213362 + THE1B LTR MaLR 1 364 0 961 153 15 45 chr21 23696034 23696236 -11211334 + MLT2A2 LTR ERVL 1 196 -257 985 96 14 0 chr21 23696236 23696382 -11211188 + MSTA-int LTR MaLR 1504 1651 0 2296 158 19 23 chr21 23696382 23696744 -11210826 + MSTA LTR MaLR 1 362 -66 2033 150 36 25 chr21 23696744 23697104 -11210466 + THE1B LTR MaLR 1 364 0 2296 158 19 23 chr21 23697104 23697171 -11210399 + MSTA LTR MaLR 362 428 0 198 243 0 0 chr21 23697171 23697208 -11210362 + L2 LINE L2 3027 3063 -250 307 308 9 28 chr21 23697499 23697606 -11209964 - MIR SINE MIR -70 138 34 290 130 0 19 chr21 23698032 23698086 -11209484 + (TCC)n Simple_repeat Simple_repeat 3 55 0 391 256 29 51 chr21 23698213 23698350 -11209220 - MIR SINE MIR -36 226 93 2438 75 7 3 chr21 23698661 23698969 -11208601 + AluY SINE Alu 1 309 -2 349 250 0 0 chr21 23699446 23699530 -11208040 + MER53 DNA DNA 1 84 -105 1398 190 43 25 chr21 23699896 23700175 -11207395 - AluJo SINE Alu -28 284 1 503 117 0 0 chr21 23700334 23700411 -11207159 + MADE1 DNA Mariner 4 80 0 251 27 0 27 chr21 23700955 23700992 -11206578 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 1792 28 0 0 chr21 23700993 23701206 -11206364 - L1PA4 LINE L1 -4 6151 5939 274 293 73 8 chr21 23701981 23702104 -11205466 + MIR SINE MIR 2 132 -130 273 57 0 0 chr21 23702901 23702936 -11204634 + (TG)n Simple_repeat Simple_repeat 2 36 0 330 171 0 0 chr21 23703050 23703120 -11204450 + CT-rich Low_complexity Low_complexity 1 70 0 42 20 0 0 chr21 23703957 23704006 -11203564 + AT_rich Low_complexity Low_complexity 1 49 0 1789 171 20 7 chr21 23704261 23704560 -11203010 + AluJo SINE Alu 1 303 -9 205 273 0 45 chr21 23706598 23706664 -11200906 + L2 LINE L2 3165 3227 -86 226 309 149 0 chr21 23707619 23707713 -11199857 - MIR SINE MIR -67 141 34 472 226 61 43 chr21 23707879 23708043 -11199527 + MIR SINE MIR 94 260 -2 401 195 0 0 chr21 23708446 23708523 -11199047 - MER103 DNA DNA -87 79 3 22 35 0 0 chr21 23708842 23708871 -11198699 + AT_rich Low_complexity Low_complexity 1 29 0 1182 299 73 32 chr21 23709165 23710048 -11197522 + L1MEd LINE L1 423 1374 -4892 313 194 20 31 chr21 23710806 23710904 -11196666 + (TA)n Simple_repeat Simple_repeat 1 97 0 1166 276 46 31 chr21 23711077 23711493 -11196077 + MLT1G1 LTR MaLR 1 422 -173 282 245 0 82 chr21 23711548 23711646 -11195924 + MLT1G1 LTR MaLR 535 624 0 417 284 18 74 chr21 23711648 23711877 -11195693 + L1ME LINE L1 5286 5501 -661 880 239 92 0 chr21 23711897 23712115 -11195455 + MIR SINE MIR 15 252 -10 346 312 61 44 chr21 23712120 23712415 -11195155 + L1ME LINE L1 5484 5783 -379 251 320 78 46 chr21 23715160 23715379 -11192191 + L2 LINE L2 2360 2585 -729 397 246 29 51 chr21 23715885 23716023 -11191547 + L2 LINE L2 3173 3307 -6 356 298 15 23 chr21 23716090 23716221 -11191349 + MIR SINE MIR 102 231 -31 384 234 122 0 chr21 23716284 23716391 -11191179 + L1ME4a LINE L1 5542 5661 -460 340 311 67 59 chr21 23716540 23716810 -11190760 + L1ME4a LINE L1 5849 6120 -1 1185 112 0 6 chr21 23718758 23718918 -11188652 - AluSg/x SINE Alu -20 290 132 461 273 93 31 chr21 23719915 23720109 -11187461 - MIR SINE MIR -22 240 35 595 222 8 0 chr21 23720163 23720280 -11187290 + MER45A DNA AcHobo 39 156 -22 1476 207 56 27 chr21 23720288 23720626 -11186944 + MLT1A2 LTR MaLR 26 373 -1 800 227 126 32 chr21 23722876 23723154 -11184416 - L2 LINE L2 0 3313 3010 456 295 31 0 chr21 23723383 23723512 -11184058 + MER45A DNA AcHobo 2 134 -44 25 51 0 0 chr21 23723611 23723650 -11183920 + AT_rich Low_complexity Low_complexity 1 39 0 37914 31 1 1 chr21 23723832 23729857 -11177713 - L1PA2 LINE L1 -5 6150 1 240 149 30 15 chr21 23730932 23730999 -11176571 + CT-rich Low_complexity Low_complexity 2 69 0 1376 167 66 86 chr21 23731361 23731757 -11175813 + MLT1B LTR MaLR 1 388 -2 779 163 18 30 chr21 23731757 23731923 -11175647 - Charlie5 DNA MER1_type -46 2566 2403 1649 169 89 6 chr21 23732773 23733110 -11174460 - L1MC2 LINE L1 -8 6336 5972 2100 159 62 0 chr21 23733228 23733600 -11173970 - L1MC2 LINE L1 -374 5970 5576 213 39 0 0 chr21 23735085 23735111 -11172459 + (T)n Simple_repeat Simple_repeat 1 26 0 1763 168 19 13 chr21 23735910 23736220 -11171350 + AluJb SINE Alu 1 312 0 441 0 0 0 chr21 23737224 23737273 -11170297 + (CA)n Simple_repeat Simple_repeat 1 49 0 26 30 0 0 chr21 23738130 23738163 -11169407 + AT_rich Low_complexity Low_complexity 1 33 0 416 198 47 19 chr21 23738629 23738735 -11168835 + MER91C DNA MER1_type 32 140 0 499 284 35 52 chr21 23738792 23739024 -11168546 + L3 LINE CR1 1331 1558 -19 230 231 15 0 chr21 23739369 23739434 -11168136 + (TG)n Simple_repeat Simple_repeat 1 66 0 457 273 79 12 chr21 23739726 23739940 -11167630 + MIR SINE MIR 3 229 -33 369 195 106 44 chr21 23741598 23741711 -11165859 - L1ME4a LINE L1 -31 6090 5971 538 309 67 76 chr21 23742561 23742926 -11164644 - L1ME4a LINE L1 -307 5814 5454 2610 39 0 7 chr21 23742926 23743235 -11164335 - AluY SINE Alu -4 307 1 538 309 67 76 chr21 23743235 23743422 -11164148 - L1ME4a LINE L1 -667 5454 5267 292 244 64 19 chr21 23744020 23744176 -11163394 + (TCTA)n Simple_repeat Simple_repeat 2 164 0 1423 204 103 53 chr21 23744534 23744970 -11162600 + MLT1C LTR MaLR 1 458 -9 7784 28 23 0 chr21 23745865 23747211 -11160359 + L1PA4 LINE L1 4788 6155 0 2173 122 3 0 chr21 23747417 23747713 -11159857 - AluSq SINE Alu -14 299 3 274 279 114 21 chr21 23748388 23748528 -11159042 - L2 LINE L2 -639 2675 2523 838 189 40 0 chr21 23748770 23748945 -11158625 - MER53 DNA DNA -7 182 1 2128 186 9 54 chr21 23749041 23749428 -11158142 + MLT2D LTR ERVL 5 373 -41 378 0 0 0 chr21 23749428 23749470 -11158100 + (CA)n Simple_repeat Simple_repeat 1 42 0 2128 186 9 54 chr21 23749470 23749511 -11158059 + MLT2D LTR ERVL 373 414 0 22 0 0 0 chr21 23749626 23749648 -11157922 + AT_rich Low_complexity Low_complexity 1 22 0 525 270 153 18 chr21 23749796 23750018 -11157552 - L2 LINE L2 -147 3166 2915 323 335 54 30 chr21 23750061 23750228 -11157342 + MIR3 SINE MIR 21 191 -17 352 189 104 57 chr21 23751527 23751633 -11155937 + MER20 DNA MER1_type 75 185 -34 2182 112 3 7 chr21 23752843 23753148 -11154422 + AluSx SINE Alu 3 306 -6 301 267 117 39 chr21 23753337 23753517 -11154053 - L1MC4a LINE L1 -1921 5887 5694 1774 226 5 16 chr21 23755028 23755405 -11152165 + MLT1A2 LTR MaLR 2 374 0 2726 121 89 9 chr21 23755571 23756010 -11151560 + LTR44 LTR ERV1 1 474 -45 655 195 0 92 chr21 23756010 23756174 -11151396 + MER83B LTR ERV1 1 149 -229 315 0 0 0 chr21 23756755 23756790 -11150780 + (TG)n Simple_repeat Simple_repeat 2 36 0 195 0 86 0 chr21 23756831 23756866 -11150704 + (TA)n Simple_repeat Simple_repeat 2 39 0 234 0 0 0 chr21 23756910 23756936 -11150634 + (CA)n Simple_repeat Simple_repeat 2 27 0 189 107 0 0 chr21 23756941 23756969 -11150601 + (TG)n Simple_repeat Simple_repeat 2 29 0 297 0 0 0 chr21 23757010 23757034 -11150536 + (CA)n Simple_repeat Simple_repeat 1 57 0 297 0 0 0 chr21 23757034 23757067 -11150503 + (CA)n Simple_repeat Simple_repeat 2 34 0 1858 156 13 82 chr21 23757124 23757514 -11150056 + MLT1A1 LTR MaLR 1 363 -2 1259 221 30 18 chr21 23757685 23758024 -11149546 - MLT1A1 LTR MaLR -13 352 10 438 280 19 0 chr21 23759983 23760090 -11147480 - MER81 DNA DNA -2 112 4 687 193 14 35 chr21 23761128 23761273 -11146297 + MER63 DNA MER1_type 14 781 -281 757 234 41 0 chr21 23761353 23761524 -11146046 + MER5B DNA MER1_type 1 178 0 1531 195 36 0 chr21 23762194 23762471 -11145099 + AluJo SINE Alu 26 312 0 1673 237 68 15 chr21 23762502 23762974 -11144596 - L1ME3A LINE L1 -8 6162 5666 2820 111 14 0 chr21 23763263 23763633 -11143937 + THE1C LTR MaLR 1 375 0 432 254 109 29 chr21 23763648 23763786 -11143784 - MIR3 SINE MIR -28 180 32 332 204 112 10 chr21 23764642 23764740 -11142830 + L3 LINE CR1 650 757 -820 2362 117 58 17 chr21 23766029 23766389 -11141181 + THE1C LTR MaLR 1 375 0 996 155 5 91 chr21 23766911 23767130 -11140440 + AluJo SINE Alu 95 294 -18 416 240 108 16 chr21 23767774 23767903 -11139667 - MER106B DNA MER1_type -16 1043 903 388 321 0 0 chr21 23770257 23770369 -11137201 + MIR SINE MIR 102 213 -49 2179 93 4 0 chr21 23770539 23770861 -11136709 + AluY SINE Alu 1 323 0 216 111 0 0 chr21 23771242 23771278 -11136292 + (CAT)n Simple_repeat Simple_repeat 3 38 0 405 137 8 188 chr21 23772121 23772189 -11135381 + MER21B LTR ERV1 1 41 -822 1664 213 42 20 chr21 23772189 23772546 -11135024 - MLT1A1 LTR MaLR 0 365 1 405 137 8 188 chr21 23772546 23772594 -11134976 + MER21B LTR ERV1 41 96 -767 2632 253 55 36 chr21 23772601 23773348 -11134222 + MER21B LTR ERV1 19 779 -84 26 30 0 0 chr21 23773534 23773567 -11134003 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr21 23775168 23775189 -11132381 + AT_rich Low_complexity Low_complexity 1 21 0 1265 266 39 44 chr21 23775740 23775791 -11131779 - L1ME1 LINE L1 -9 6157 6107 1479 154 29 0 chr21 23775791 23776037 -11131533 - L1MA4A LINE L1 -6 6297 6045 1265 266 39 44 chr21 23776037 23776421 -11131149 - L1ME1 LINE L1 -59 6107 5724 2296 122 65 11 chr21 23777012 23777366 -11130204 + THE1C LTR MaLR 3 375 0 1592 236 68 14 chr21 23777373 23777817 -11129753 - L1MC4a LINE L1 -1927 5881 5414 261 167 135 125 chr21 23779848 23779944 -11127626 - MER5A DNA MER1_type -84 105 9 183 42 0 0 chr21 23780408 23780432 -11127138 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 410 256 8 31 chr21 23780636 23780765 -11126805 - MIR SINE MIR -26 236 111 306 132 0 0 chr21 23781452 23781505 -11126065 + (TC)n Simple_repeat Simple_repeat 2 54 0 480 361 15 10 chr21 23781623 23781825 -11125745 - MIR SINE MIR -44 218 16 1578 152 52 26 chr21 23782015 23782285 -11125285 + AluJo SINE Alu 5 281 -31 216 186 0 23 chr21 23782297 23782340 -11125230 + (CA)n Simple_repeat Simple_repeat 2 43 0 481 133 26 80 chr21 23782340 23782453 -11125117 - MER53 DNA DNA -69 120 14 691 62 0 0 chr21 23782453 23782533 -11125037 + MADE1 DNA Mariner 1 80 0 3196 46 23 15 chr21 23782743 23783137 -11124433 + L1PA7 LINE L1 5758 6154 0 23 0 0 0 chr21 23783384 23783407 -11124163 + AT_rich Low_complexity Low_complexity 1 23 0 2820 10 0 10 chr21 23784330 23784643 -11122927 - AluYb8 SINE Alu -8 310 1 443 235 106 41 chr21 23785600 23785770 -11121800 + MIR SINE MIR 76 256 -6 206 298 43 21 chr21 23786531 23786625 -11120945 + MIR SINE MIR 110 205 -57 1190 166 13 22 chr21 23787853 23788082 -11119488 - MER31A LTR ERV1 -3 482 256 983 197 38 34 chr21 23788202 23788420 -11119150 - MER31A LTR ERV1 -245 240 19 2246 119 0 0 chr21 23788420 23788723 -11118847 + AluSg SINE Alu 1 303 -7 983 197 38 34 chr21 23788723 23788743 -11118827 - MER31A LTR ERV1 -466 19 1 726 227 25 15 chr21 23788794 23788992 -11118578 - MIR SINE MIR -5 257 58 483 185 19 19 chr21 23788992 23789100 -11118470 - MER69 DNA AcHobo -2 2524 2417 1425 221 93 17 chr21 23789484 23789901 -11117669 + L1M4 LINE L1 2485 2933 -3213 24 0 0 0 chr21 23791185 23791209 -11116361 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr21 23791635 23791658 -11115912 + AT_rich Low_complexity Low_complexity 1 23 0 391 209 18 0 chr21 23791978 23792088 -11115482 + GA-rich Low_complexity Low_complexity 1 112 0 186 103 0 0 chr21 23793082 23793111 -11114459 + (TAAA)n Simple_repeat Simple_repeat 4 32 0 358 316 51 23 chr21 23794968 23795145 -11112425 - L1MC4a LINE L1 -1878 5930 5749 2352 224 47 33 chr21 23795319 23795869 -11111701 - MER74A LTR ERVL 0 558 1 197 259 224 0 chr21 23796754 23796839 -11110731 - L2 LINE L2 -1 3271 3168 2577 202 7 13 chr21 23796885 23797346 -11110224 - LTR40b LTR ERVL 0 462 5 2678 105 27 14 chr21 23798697 23799067 -11108503 - THE1C LTR MaLR 0 375 1 2408 151 39 31 chr21 23799067 23799525 -11108045 + MLT1C LTR MaLR 6 467 0 877 280 69 9 chr21 23799647 23799981 -11107589 - Zaphod DNA AcHobo -3 4020 3663 2318 77 10 0 chr21 23799981 23800279 -11107291 - AluSq SINE Alu -12 301 1 877 280 69 9 chr21 23800279 23800290 -11107280 - Zaphod DNA AcHobo -360 3663 3654 561 187 13 19 chr21 23800360 23800582 -11106988 - Zaphod DNA AcHobo -475 3548 3287 1265 207 30 36 chr21 23800606 23800911 -11106659 - Zaphod DNA AcHobo -3361 662 360 452 107 12 36 chr21 23800980 23801064 -11106506 + MER53 DNA DNA 105 186 -3 589 236 88 28 chr21 23801070 23801252 -11106318 - Zaphod DNA AcHobo -3735 288 96 2093 122 0 17 chr21 23801464 23801759 -11105811 + AluSx SINE Alu 3 292 -20 621 191 61 7 chr21 23803740 23803887 -11103683 + MER103 DNA DNA 6 160 -6 441 186 0 0 chr21 23804416 23804502 -11103068 - L1MB7 LINE L1 -14 6170 6085 669 69 20 0 chr21 23804610 23804712 -11102858 - L1PB1 LINE L1 0 6151 6048 239 291 0 0 chr21 23804739 23804794 -11102776 + (TA)n Simple_repeat Simple_repeat 1 55 0 532 135 52 0 chr21 23804875 23804971 -11102599 + L1PB1 LINE L1 5939 6039 -112 207 213 21 0 chr21 23805151 23805198 -11102372 + A-rich Low_complexity Low_complexity 2 49 0 317 249 77 59 chr21 23806701 23806870 -11100700 + MLT1J LTR MaLR 222 393 -118 219 178 44 0 chr21 23808981 23809026 -11098544 + GA-rich Low_complexity Low_complexity 2 48 0 28 0 0 0 chr21 23813037 23813065 -11094505 + AT_rich Low_complexity Low_complexity 1 28 0 580 278 85 14 chr21 23814039 23814251 -11093319 + MIR SINE MIR 35 261 -1 21 0 0 0 chr21 23814900 23814921 -11092649 + AT_rich Low_complexity Low_complexity 1 21 0 201 176 0 0 chr21 23815280 23815314 -11092256 + A-rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 23815861 23815889 -11091681 + AT_rich Low_complexity Low_complexity 1 28 0 1121 121 50 20 chr21 23818446 23818567 -11089003 + MER2 DNA MER2_type 1 132 -212 1814 188 9 3 chr21 23818567 23818912 -11088658 - MER7A DNA MER2_type 0 346 2 1121 121 50 20 chr21 23818912 23818989 -11088581 + MER2 DNA MER2_type 132 205 -139 24 0 0 0 chr21 23818989 23819013 -11088557 + AT_rich Low_complexity Low_complexity 1 24 0 2694 17 0 0 chr21 23819481 23819779 -11087791 + AluY SINE Alu 1 298 -13 518 216 117 0 chr21 23820451 23820562 -11087008 + FRAM SINE Alu 23 146 -30 2711 65 0 0 chr21 23820568 23820922 -11086648 + L1PA7 LINE L1 5781 6134 -20 880 242 52 20 chr21 23822477 23822725 -11084845 - MIR SINE MIR 0 262 7 322 335 74 25 chr21 23822962 23823165 -11084405 + MIR SINE MIR 2 214 -48 204 232 18 18 chr21 23823668 23823724 -11083846 + GA-rich Low_complexity Low_complexity 1 56 0 2181 138 0 0 chr21 23824270 23824582 -11082988 - AluSx SINE Alu 0 312 1 421 101 0 14 chr21 23825087 23825156 -11082414 - L1P LINE L1 -1740 4406 4339 2440 88 78 13 chr21 23825156 23825530 -11082040 + L1PA10 LINE L1 5771 6168 0 1725 183 7 0 chr21 23827830 23828119 -11079451 + AluJb SINE Alu 1 291 -21 194 289 13 53 chr21 23828134 23828210 -11079360 - L3 LINE CR1 -3 1574 1502 694 244 28 11 chr21 23828302 23828478 -11079092 + LTR28 LTR ERV1 1 179 -841 279 73 0 0 chr21 23828459 23828500 -11079070 + LTR25 LTR ERV1 493 533 -261 978 176 33 35 chr21 23829427 23829778 -11077792 - LTR45B LTR ERV1 -1 488 22 21 0 0 0 chr21 23830687 23830708 -11076862 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr21 23830827 23830852 -11076718 + AT_rich Low_complexity Low_complexity 1 25 0 374 250 108 0 chr21 23831045 23831165 -11076405 + MER46C DNA MER2_type 5 137 -201 22 0 0 0 chr21 23831852 23831874 -11075696 + AT_rich Low_complexity Low_complexity 1 22 0 206 323 81 10 chr21 23832582 23832681 -11074889 - L2 LINE L2 0 3313 3208 630 319 5 5 chr21 23836460 23836667 -11070903 - MIR SINE MIR 0 262 56 685 288 85 34 chr21 23836854 23837302 -11070268 + MLT1L LTR MaLR 145 615 0 1659 232 27 61 chr21 23837470 23838031 -11069539 - MER34 LTR ERV1 0 542 1 49 84 0 0 chr21 23838035 23838154 -11069416 + AT_rich Low_complexity Low_complexity 1 119 0 627 240 28 28 chr21 23838345 23838562 -11069008 - L1ME2 LINE L1 -298 5866 5650 315 147 80 13 chr21 23838936 23839011 -11068559 - L1ME1 LINE L1 -307 5859 5780 281 272 0 0 chr21 23839316 23839408 -11068162 - L1MC4 LINE L1 -28 8014 7923 216 0 0 0 chr21 23840147 23840171 -11067399 + (TA)n Simple_repeat Simple_repeat 1 24 0 1785 169 27 9 chr21 23841080 23841418 -11066152 + MER2 DNA MER2_type 1 344 0 1922 168 9 1 chr21 23841752 23842197 -11065373 - MER72 LTR ERV1 -105 617 136 2110 140 58 36 chr21 23842198 23842716 -11064854 - MLT2A2 LTR ERVL 0 554 1 775 182 0 8 chr21 23842716 23842848 -11064722 - MER72 LTR ERV1 -583 139 9 2290 151 44 12 chr21 23844112 23844523 -11063047 - MSTA LTR MaLR -4 424 1 1660 222 49 10 chr21 23844888 23845294 -11062276 + LTR40b LTR ERVL 40 461 -1 22 80 0 0 chr21 23845359 23845409 -11062161 + AT_rich Low_complexity Low_complexity 1 50 0 24 53 0 0 chr21 23845747 23845785 -11061785 + AT_rich Low_complexity Low_complexity 1 38 0 871 262 63 57 chr21 23847384 23847891 -11059679 + L1M4 LINE L1 3614 4123 -2023 385 261 0 11 chr21 23847893 23847985 -11059585 + AluJb SINE Alu 42 132 -170 264 324 14 14 chr21 23847992 23848131 -11059439 + L1M4 LINE L1 4115 4253 -1893 464 338 47 9 chr21 23848150 23848363 -11059207 + L1M4 LINE L1 4781 5001 -1145 1940 98 18 0 chr21 23848635 23848943 -11058627 + L1MA5A LINE L1 6000 6312 0 403 285 177 32 chr21 23849287 23849603 -11057967 + L2 LINE L2 2303 2664 -650 833 108 8 8 chr21 23850210 23850339 -11057231 + L1MA5A LINE L1 6169 6297 0 2634 89 58 17 chr21 23850836 23851196 -11056374 + THE1C LTR MaLR 1 375 0 189 315 22 45 chr21 23851575 23851664 -11055906 + L2 LINE L2 2896 2982 -290 1544 270 75 58 chr21 23851672 23852235 -11055335 + L1M4 LINE L1 3322 3874 -2272 207 0 0 0 chr21 23852235 23852258 -11055312 + (TA)n Simple_repeat Simple_repeat 1 23 0 414 0 0 0 chr21 23852257 23852303 -11055267 + (GA)n Simple_repeat Simple_repeat 2 47 0 1544 270 75 58 chr21 23852258 23852571 -11054999 + L1M4 LINE L1 3874 4167 -1979 3030 201 11 7 chr21 23852745 23853301 -11054269 + MER74A LTR ERVL 1 558 0 327 264 70 23 chr21 23853469 23853598 -11053972 - L1M4 LINE L1 -3155 2991 2857 371 328 54 41 chr21 23853608 23854101 -11053469 + L2 LINE L2 2164 2697 -617 344 272 96 70 chr21 23854333 23854393 -11053177 + L2 LINE L2 3035 3092 -221 685 190 60 0 chr21 23854393 23854509 -11053061 - FLAM_A SINE Alu -10 123 1 344 272 96 70 chr21 23854509 23854720 -11052850 + L2 LINE L2 3092 3313 0 1540 127 0 22 chr21 23855562 23855790 -11051780 + AluJo SINE Alu 71 293 -19 230 345 150 0 chr21 23856044 23856157 -11051413 + L2 LINE L2 3134 3263 -9 23 54 0 0 chr21 23856992 23857029 -11050541 + AT_rich Low_complexity Low_complexity 1 37 0 21 82 0 0 chr21 23857041 23857090 -11050480 + AT_rich Low_complexity Low_complexity 1 49 0 267 176 40 54 chr21 23858572 23858646 -11048924 + MER5B DNA MER1_type 103 175 -3 1818 183 69 98 chr21 23859519 23860038 -11047532 - MLT1D LTR MaLR -1 504 1 24 0 0 0 chr21 23860457 23860481 -11047089 + AT_rich Low_complexity Low_complexity 1 24 0 441 54 0 0 chr21 23860574 23860630 -11046940 + (TG)n Simple_repeat Simple_repeat 2 57 0 432 281 0 0 chr21 23860630 23860769 -11046801 + (TA)n Simple_repeat Simple_repeat 2 140 0 391 256 0 0 chr21 23860772 23860862 -11046708 + L1MC4 LINE L1 6614 6703 -1339 279 276 0 0 chr21 23860863 23860950 -11046620 + (TA)n Simple_repeat Simple_repeat 1 87 0 600 315 79 35 chr21 23861260 23861600 -11045970 + L1ME4a LINE L1 5310 5664 -457 392 318 71 25 chr21 23861614 23861853 -11045717 + L1ME4a LINE L1 5707 5956 -165 571 202 57 8 chr21 23862871 23862995 -11044575 + MER3 DNA MER1_type 2 131 -78 940 181 35 35 chr21 23863242 23863441 -11044129 - MER3 DNA MER1_type -9 200 2 23 0 0 0 chr21 23863564 23863587 -11043983 + AT_rich Low_complexity Low_complexity 1 23 0 1431 208 41 44 chr21 23864983 23865348 -11042222 - MLT1A2 LTR MaLR -7 367 4 321 303 106 14 chr21 23865378 23865520 -11042050 + MLT1I LTR MaLR 4 158 -251 1787 197 33 8 chr21 23865760 23866120 -11041450 + L1MB5 LINE L1 5797 6165 -9 217 302 0 34 chr21 23867412 23867531 -11040039 + GA-rich Low_complexity Low_complexity 4 118 0 180 0 0 0 chr21 23868051 23868071 -11039499 + (TTG)n Simple_repeat Simple_repeat 2 21 0 228 67 0 0 chr21 23868680 23868710 -11038860 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 44 20 0 0 chr21 23868820 23868871 -11038699 + AT_rich Low_complexity Low_complexity 1 51 0 319 236 67 11 chr21 23868893 23868982 -11038588 + MIR SINE MIR 36 129 -133 2113 222 59 14 chr21 23869341 23869901 -11037669 - L1MD2 LINE L1 -227 6132 5607 192 77 0 0 chr21 23871293 23871319 -11036251 + (TTTC)n Simple_repeat Simple_repeat 3 28 0 285 256 70 112 chr21 23872209 23872451 -11035119 - L2 LINE L2 -358 2956 2725 266 319 32 0 chr21 23872992 23873086 -11034484 + L2 LINE L2 2289 2385 -929 2285 119 0 0 chr21 23873576 23873886 -11033684 + AluSg SINE Alu 1 310 0 3950 88 0 0 chr21 23875249 23875785 -11031785 - L1P LINE L1 -958 5188 4653 1939 45 0 0 chr21 23875787 23876008 -11031562 + L1PA7 LINE L1 5929 6149 -5 2003 191 15 18 chr21 23876021 23876420 -11031150 + L1MB5 LINE L1 5776 6173 -1 405 162 30 71 chr21 23877277 23877376 -11030194 - LTR50 LTR ERVL -2 793 699 2457 131 5 52 chr21 23877377 23877716 -11029854 + THE1B LTR MaLR 1 322 -42 2356 110 0 0 chr21 23877716 23878026 -11029544 - AluSg SINE Alu 0 310 1 2457 131 5 52 chr21 23878026 23878068 -11029502 + THE1B LTR MaLR 322 364 0 599 204 14 21 chr21 23878792 23878934 -11028636 - LTR41 LTR ERVL -632 141 1 575 287 45 41 chr21 23879194 23879438 -11028132 + MLT1J2 LTR MaLR 20 264 -186 739 160 32 16 chr21 23879549 23879674 -11027896 + MER5A DNA MER1_type 4 130 -59 3442 68 0 0 chr21 23879850 23880276 -11027294 + LTR8 LTR ERV1 162 587 -104 225 0 0 0 chr21 23880277 23880302 -11027268 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 2049 117 7 7 chr21 23880302 23880633 -11026937 + AluSq SINE Alu 1 331 0 764 240 16 70 chr21 23881765 23881963 -11025607 + MIR SINE MIR 12 194 -68 2410 78 3 0 chr21 23881963 23882258 -11025312 + AluSp SINE Alu 1 296 -17 764 240 16 70 chr21 23882258 23882317 -11025253 + MIR SINE MIR 194 255 -7 1265 217 135 70 chr21 23882849 23883338 -11024232 + LTR33A LTR ERVL 1 521 -2 522 178 75 9 chr21 23883388 23883495 -11024075 + MIR SINE MIR 23 136 -72 23 33 0 0 chr21 23883983 23884013 -11023557 + AT_rich Low_complexity Low_complexity 1 30 0 451 234 0 0 chr21 23884137 23884214 -11023356 - AluSp SINE Alu -101 212 136 381 22 0 0 chr21 23884311 23884357 -11023213 + (CA)n Simple_repeat Simple_repeat 1 46 0 917 229 62 0 chr21 23884542 23884769 -11022801 + MER33 DNA MER1_type 7 247 -77 2166 87 0 51 chr21 23885529 23885841 -11021729 + AluY SINE Alu 1 296 -15 525 222 31 72 chr21 23886575 23886769 -11020801 + MLT1C LTR MaLR 6 191 -276 665 66 44 0 chr21 23886769 23886860 -11020710 + MSTB2 LTR MaLR 1 95 -362 962 159 20 60 chr21 23886871 23887072 -11020498 + MSTB2 LTR MaLR 263 455 -2 324 215 0 17 chr21 23888092 23888170 -11019400 + MER58 DNA MER1_type 261 2414 -6 188 284 15 0 chr21 23889427 23889494 -11018076 + MIR SINE MIR 25 92 -116 2495 89 0 0 chr21 23889599 23889901 -11017669 + AluSc SINE Alu 1 302 -7 1749 140 0 62 chr21 23890087 23890203 -11017367 + AluJb SINE Alu 1 123 -189 2382 69 3 20 chr21 23890203 23890507 -11017063 - AluSg1 SINE Alu -10 299 1 1749 140 0 62 chr21 23890507 23890698 -11016872 + AluJb SINE Alu 123 289 -23 1815 327 92 10 chr21 23891619 23892412 -11015158 + L3 LINE CR1 363 1220 -357 40 49 0 0 chr21 23892873 23892934 -11014636 + AT_rich Low_complexity Low_complexity 1 61 0 1780 178 0 29 chr21 23892942 23893257 -11014313 + AluJo SINE Alu 1 306 -6 1928 279 18 8 chr21 23894601 23895110 -11012460 + MLT1H LTR MaLR 20 533 -16 237 132 38 19 chr21 23896889 23896942 -11010628 + HSMAR1 DNA Mariner 1234 1287 0 1086 277 72 6 chr21 23898121 23898482 -11009088 - MLT1C LTR MaLR 0 467 83 4410 172 70 19 chr21 23899114 23899546 -11008024 - L1MA9 LINE L1 -38 6274 5866 2016 75 17 38 chr21 23899546 23899839 -11007731 - L1MA2 LINE L1 0 6304 6018 4410 172 70 19 chr21 23899839 23900374 -11007196 - L1MA9 LINE L1 -446 5866 5257 27 0 0 0 chr21 23900591 23900618 -11006952 + AT_rich Low_complexity Low_complexity 1 27 0 263 333 44 26 chr21 23900886 23901000 -11006570 + L2 LINE L2 3148 3263 -9 2180 103 3 23 chr21 23901307 23901617 -11005953 - AluSx SINE Alu 0 312 9 1472 206 35 34 chr21 23902493 23902949 -11004621 + MLT1E1 LTR MaLR 1 644 -10 1063 230 49 84 chr21 23903035 23903248 -11004322 + MER93a LTR ERV1 61 259 -143 1924 120 0 39 chr21 23903248 23903531 -11004039 + AluSx SINE Alu 3 274 -38 1063 230 49 84 chr21 23903531 23903661 -11003909 + MER93a LTR ERV1 259 392 -10 763 187 78 52 chr21 23904027 23904257 -11003313 + MER106A DNA MER1_type 1 236 0 280 300 69 15 chr21 23904288 23904418 -11003152 + L1ME3 LINE L1 6017 6153 -9 669 280 51 0 chr21 23904499 23904713 -11002857 + MIR SINE MIR 17 241 -21 281 26 0 26 chr21 23904744 23904783 -11002787 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1985 125 0 10 chr21 23904785 23905073 -11002497 - AluSx SINE Alu -27 285 1 409 316 0 51 chr21 23905374 23905551 -11002019 + MIR3 SINE MIR 11 178 -30 336 186 0 0 chr21 23905656 23905715 -11001855 - MIR SINE MIR -91 171 113 230 125 0 0 chr21 23905754 23905786 -11001784 - MIR SINE MIR -219 43 12 640 272 0 17 chr21 23906192 23906372 -11001198 + MER8 DNA MER2_type 1 177 -62 891 256 59 15 chr21 23907715 23908034 -10999536 + LTR16C LTR ERVL 52 485 -6 193 328 60 15 chr21 23908103 23908237 -10999333 - MIR SINE MIR -42 220 81 801 152 23 6 chr21 23908512 23908869 -10998701 + (TGGA)n Simple_repeat Simple_repeat 1 363 0 347 370 43 11 chr21 23909451 23909635 -10997935 - L3 LINE CR1 -14 1563 1374 561 330 104 11 chr21 23909747 23910026 -10997544 - L3 LINE CR1 -375 1202 898 271 304 104 9 chr21 23910023 23910138 -10997432 - L3 LINE CR1 -974 603 478 189 175 0 0 chr21 23910536 23910576 -10996994 + T-rich Low_complexity Low_complexity 1 40 0 238 217 0 33 chr21 23910615 23910707 -10996863 + T-rich Low_complexity Low_complexity 2 90 0 1860 108 0 0 chr21 23911576 23911825 -10995745 + AluSc SINE Alu 30 278 -31 2172 120 17 0 chr21 23912461 23912762 -10994808 - AluSx SINE Alu -6 306 1 27 29 0 0 chr21 23914762 23914796 -10992774 + AT_rich Low_complexity Low_complexity 1 34 0 7935 125 30 39 chr21 23915720 23917030 -10990540 + HSMAR2 DNA Mariner 2 1300 -2 316 293 139 15 chr21 23917078 23917337 -10990233 + L2 LINE L2 1632 1922 -1392 282 292 71 71 chr21 23918192 23918459 -10989111 + L2 LINE L2 2954 3220 -52 610 305 42 18 chr21 23919193 23919611 -10987959 + LTR33 LTR ERVL 5 462 -59 1736 158 166 6 chr21 23919828 23920177 -10987393 - MLT2C2 LTR ERVL -59 405 1 183 80 0 0 chr21 23920414 23920439 -10987131 + (T)n Simple_repeat Simple_repeat 1 25 0 2546 167 32 43 chr21 23921092 23921239 -10986331 + LOR1b LTR ERV1 1 148 -313 2039 150 7 0 chr21 23921239 23921539 -10986031 + AluSx SINE Alu 1 302 -10 2546 167 32 43 chr21 23921539 23921857 -10985713 + LOR1b LTR ERV1 148 461 0 225 65 0 0 chr21 23922083 23922114 -10985456 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 234 0 0 0 chr21 23922218 23922244 -10985326 + (TC)n Simple_repeat Simple_repeat 1 26 0 578 175 10 0 chr21 23922590 23922687 -10984883 + Tigger6 DNA MER2_type 1498 1595 -2 456 312 14 7 chr21 23924200 23924344 -10983226 + MIR SINE MIR 4 148 -114 1095 160 0 11 chr21 23926306 23926493 -10981077 + L1MD2 LINE L1 6174 6358 -1 920 161 23 17 chr21 23926503 23926677 -10980893 - L1MA5A LINE L1 -80 6217 6043 609 111 40 10 chr21 23926677 23926770 -10980800 + L1MA5A LINE L1 6190 6291 -6 183 310 130 10 chr21 23928171 23928271 -10979299 - L2 LINE L2 -433 2881 2770 398 296 47 60 chr21 23928857 23929090 -10978480 + L1ME LINE L1 5545 5774 -347 2150 77 0 7 chr21 23929331 23929605 -10977965 + L1PA7 LINE L1 5883 6154 0 342 0 0 0 chr21 23929865 23929903 -10977667 + (CA)n Simple_repeat Simple_repeat 2 39 0 2537 68 0 0 chr21 23930547 23930858 -10976712 - AluY SINE Alu 0 311 1 243 257 64 41 chr21 23931710 23931881 -10975689 - L1P5 LINE L1 -669 5482 5308 2087 81 0 54 chr21 23931923 23932244 -10975326 - AluY SINE Alu 0 305 1 448 313 25 62 chr21 23932335 23932465 -10975105 - L1M4 LINE L1 -913 5233 5100 2004 124 0 0 chr21 23932465 23932738 -10974832 - AluSg SINE Alu -16 294 22 448 313 25 62 chr21 23932738 23932938 -10974632 - L1M4 LINE L1 -1046 5100 4915 364 226 167 54 chr21 23933741 23933909 -10973661 + MIR3 SINE MIR 21 207 -1 1512 185 34 20 chr21 23934354 23934652 -10972918 + AluJo SINE Alu 6 307 -5 684 161 17 28 chr21 23934669 23934849 -10972721 + GA-rich Low_complexity Low_complexity 3 180 0 569 194 0 25 chr21 23934880 23935040 -10972530 + GA-rich Low_complexity Low_complexity 4 159 0 632 181 24 18 chr21 23935057 23935223 -10972347 + GA-rich Low_complexity Low_complexity 3 169 0 696 141 47 6 chr21 23935249 23935419 -10972151 + GA-rich Low_complexity Low_complexity 4 180 0 248 289 87 39 chr21 23937182 23937286 -10970284 + L2 LINE L2 2538 2646 -668 292 260 13 0 chr21 23937479 23937556 -10970014 + L1ME LINE L1 5727 5804 -317 2235 118 0 0 chr21 23937613 23937910 -10969660 + AluY SINE Alu 1 297 -14 372 22 0 0 chr21 23938376 23938421 -10969149 + (TG)n Simple_repeat Simple_repeat 1 45 0 213 259 9 18 chr21 23939668 23939780 -10967790 + CT-rich Low_complexity Low_complexity 2 112 0 275 243 71 0 chr21 23939833 23939903 -10967667 - MIR SINE MIR -96 166 92 3399 82 7 0 chr21 23939978 23940405 -10967165 - L1PA7 LINE L1 -1 6153 5724 1663 178 12 94 chr21 23941973 23942389 -10965181 - MLT1B LTR MaLR -8 382 1 1830 134 58 0 chr21 23942761 23943036 -10964534 + AluSx SINE Alu 1 291 -21 1515 186 11 13 chr21 23943218 23943526 -10964044 - MLT1D LTR MaLR 0 505 212 267 152 62 179 chr21 23943544 23943656 -10963914 - MLT1D LTR MaLR -527 99 1 1584 140 0 0 chr21 23943775 23944011 -10963559 - AluJb SINE Alu -7 305 70 1073 281 95 11 chr21 23944387 23944831 -10962739 - HERV16 LTR ERVL -3952 1044 564 180 0 0 0 chr21 23944851 23944871 -10962699 + (AGGTG)n Simple_repeat Simple_repeat 3 22 0 441 204 0 0 chr21 23944909 23944997 -10962573 - MER96 DNA MER1_type? -87 88 1 1827 322 7 17 chr21 23945275 23945865 -10961705 + HERV16 LTR ERVL 2381 2964 -2032 2169 225 62 47 chr21 23946053 23946587 -10960983 - MLT1H LTR MaLR -3 546 5 206 258 0 48 chr21 23947358 23947420 -10960150 + CT-rich Low_complexity Low_complexity 1 59 0 188 191 0 24 chr21 23947716 23947758 -10959812 - MIR3 SINE MIR -21 187 147 340 169 108 15 chr21 23947930 23947995 -10959575 + MIR SINE MIR 2 72 -190 2566 129 38 22 chr21 23947996 23948444 -10959126 + MLT1C LTR MaLR 1 455 -12 2967 73 3 21 chr21 23948627 23949009 -10958561 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr21 23949012 23949041 -10958529 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr21 23949678 23949706 -10957864 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 923 135 0 15 chr21 23951524 23951657 -10955913 - FLAM_C SINE Alu -2 131 1 2465 130 11 22 chr21 23952370 23952738 -10954832 - THE1B LTR MaLR 0 364 1 2238 114 0 0 chr21 23953078 23953377 -10954193 - AluSc SINE Alu -10 299 1 579 200 11 4 chr21 23954601 23954732 -10952838 - MLT1B LTR MaLR 0 390 245 2128 117 19 0 chr21 23955319 23955627 -10951943 - L1PB1 LINE L1 -41 6110 5797 242 205 157 12 chr21 23955694 23955777 -10951793 - MLT1B LTR MaLR -279 95 1 569 170 60 0 chr21 23957398 23957498 -10950072 - FLAM_A SINE Alu -26 116 11 2628 126 22 55 chr21 23958196 23958649 -10948921 + Tigger2 DNA MER2_type 2280 2717 -1 2313 104 0 0 chr21 23959088 23959387 -10948183 + AluSx SINE Alu 1 299 -13 632 236 96 65 chr21 23959443 23959736 -10947834 + L1MC4 LINE L1 7617 7918 -124 334 199 28 99 chr21 23959741 23959882 -10947688 + L1MC4 LINE L1 7902 8032 -10 209 176 39 0 chr21 23960274 23960325 -10947245 + T-rich Low_complexity Low_complexity 2 54 0 1890 128 35 0 chr21 23960328 23960610 -10946960 - AluSx SINE Alu -1 311 20 555 97 258 24 chr21 23960813 23960937 -10946633 - MER4C LTR ERV1 -22 443 291 266 76 0 212 chr21 23960997 23961063 -10946507 - MER4A LTR ERV1 -307 357 306 1709 148 35 46 chr21 23961073 23961418 -10946152 - MER4A LTR ERV1 -323 341 1 851 243 33 24 chr21 23961426 23961636 -10945934 - MIR SINE MIR -43 219 8 212 254 16 0 chr21 23962237 23962300 -10945270 + (TAG)n Simple_repeat Simple_repeat 3 66 0 341 210 49 0 chr21 23962330 23962411 -10945159 - MIR SINE MIR -66 196 112 405 327 83 0 chr21 23962483 23962651 -10944919 - MLT1J2 LTR MaLR -26 424 243 2395 83 0 0 chr21 23963474 23963776 -10943794 + AluSq SINE Alu 2 303 -10 182 118 29 0 chr21 23964032 23964066 -10943504 + CT-rich Low_complexity Low_complexity 6 40 0 4102 106 17 7 chr21 23964493 23965096 -10942474 + L1MA4A LINE L1 5692 6300 -3 1920 140 0 7 chr21 23965729 23966041 -10941529 + AluSx SINE Alu 1 310 0 2191 102 3 3 chr21 23966047 23966342 -10941228 + AluY SINE Alu 1 295 -16 301 276 31 71 chr21 23966594 23966682 -10940888 - L1ME4a LINE L1 -214 5907 5817 5216 81 11 0 chr21 23966682 23967350 -10940220 + L1PA14 LINE L1 5484 6158 -3 301 276 31 71 chr21 23967350 23967486 -10940084 - L1ME4a LINE L1 -304 5817 5692 882 196 0 18 chr21 23970097 23970260 -10937310 - FRAM SINE Alu -11 165 6 597 278 23 12 chr21 23970639 23970812 -10936758 - MLT1J LTR MaLR -332 179 5 24 77 0 0 chr21 23970966 23971018 -10936552 + AT_rich Low_complexity Low_complexity 1 52 0 1788 146 47 4 chr21 23971636 23971911 -10935659 + AluSx SINE Alu 1 287 -25 2320 86 3 10 chr21 23972114 23972416 -10935154 - AluSq SINE Alu -13 300 1 2458 76 0 3 chr21 23972926 23973228 -10934342 + AluSc SINE Alu 5 305 -4 224 339 107 58 chr21 23973335 23973748 -10933822 + L2 LINE L2 2142 2574 -740 363 356 17 9 chr21 23973862 23973977 -10933593 - L2 LINE L2 -2 3311 3196 921 206 98 9 chr21 23974052 23974266 -10933304 + MLT1D LTR MaLR 271 503 -2 459 0 0 0 chr21 23974914 23974965 -10932605 + (CA)n Simple_repeat Simple_repeat 2 52 0 1733 227 12 58 chr21 23975885 23976161 -10931409 - MER41E LTR ERV1 -38 474 187 183 42 0 0 chr21 23976161 23976185 -10931385 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1829 94 0 28 chr21 23976185 23976439 -10931131 - AluSx SINE Alu -61 251 5 1733 227 12 58 chr21 23976439 23976645 -10930925 - MER41E LTR ERV1 -323 189 13 235 347 66 0 chr21 23979052 23979173 -10928397 + MIR SINE MIR 1 129 -133 23 0 0 0 chr21 23979459 23979482 -10928088 + AT_rich Low_complexity Low_complexity 1 23 0 1057 253 68 68 chr21 23979812 23980298 -10927272 + MLT1H LTR MaLR 64 549 0 490 225 25 58 chr21 23980348 23980488 -10927082 - FLAM_C SINE Alu 0 136 1 480 221 74 0 chr21 23980700 23980822 -10926748 - MIR SINE MIR -62 200 70 849 235 11 0 chr21 23981230 23981409 -10926161 + MER5A DNA MER1_type 3 183 -6 991 218 87 5 chr21 23981454 23981660 -10925910 + MER58A DNA MER1_type 2 224 0 367 287 45 25 chr21 23982135 23982292 -10925278 + LTR16A LTR ERVL 184 343 -107 364 260 5 10 chr21 23982916 23983118 -10924452 + GA-rich Low_complexity Low_complexity 1 200 0 293 158 12 98 chr21 23983178 23983260 -10924310 + L1ME3A LINE L1 6095 6169 -1 553 284 6 27 chr21 23983957 23984140 -10923430 - L2 LINE L2 -3 3310 3132 332 278 74 0 chr21 23984256 23984364 -10923206 - L2 LINE L2 -556 2758 2643 223 296 84 65 chr21 23985380 23985688 -10921882 - L2 LINE L2 -353 2961 2648 21 36 0 0 chr21 23987438 23987466 -10920104 + AT_rich Low_complexity Low_complexity 1 28 0 4021 136 68 0 chr21 23988391 23989052 -10918518 + L1MA4 LINE L1 5587 6292 -8 991 227 28 82 chr21 23989184 23989576 -10917994 + L1MC5 LINE L1 6702 7072 -889 494 246 42 70 chr21 23989579 23989794 -10917776 + L1MC5 LINE L1 7235 7443 -518 385 172 0 0 chr21 23990018 23990082 -10917488 + L1MC5 LINE L1 7728 7791 -170 2019 153 95 3 chr21 23990082 23990441 -10917129 + MSTA LTR MaLR 1 392 -36 332 248 75 45 chr21 23990476 23990609 -10916961 + L1MC5 LINE L1 7789 7925 -36 1852 196 26 2 chr21 23990707 23991169 -10916401 - MLT2B1 LTR ERVL 0 515 1 38 51 0 0 chr21 23991444 23991503 -10916067 + AT_rich Low_complexity Low_complexity 1 59 0 1614 146 0 87 chr21 23993595 23993786 -10913784 - AluJb SINE Alu 0 304 151 228 35 0 0 chr21 23993786 23993815 -10913755 + (TGG)n Simple_repeat Simple_repeat 3 31 0 1614 146 0 87 chr21 23993815 23993954 -10913616 - AluJb SINE Alu -153 151 1 280 297 102 34 chr21 23994134 23994252 -10913318 + L2 LINE L2 2927 3052 -220 214 281 16 16 chr21 23994464 23994528 -10913042 + L2 LINE L2 3207 3270 -2 1318 169 52 28 chr21 23994966 23995215 -10912355 + AluJo SINE Alu 1 255 -57 2059 129 3 13 chr21 23996312 23996615 -10910955 - AluSx SINE Alu -12 300 1 2073 126 23 62 chr21 23996856 23997245 -10910325 - THE1C LTR MaLR -1 374 1 330 287 60 12 chr21 23997568 23997735 -10909835 - Tigger8 DNA MER2_type -344 322 148 303 263 84 74 chr21 23997871 23998061 -10909509 + L2 LINE L2 2855 3046 -226 357 82 0 0 chr21 23998339 23998388 -10909182 + (GA)n Simple_repeat Simple_repeat 2 50 0 2248 114 24 27 chr21 23998807 23999183 -10908387 - THE1C LTR MaLR 0 375 1 63 14 0 0 chr21 23999269 23999339 -10908231 + AT_rich Low_complexity Low_complexity 1 70 0 854 107 49 15 chr21 23999339 24000307 -10907263 + (TA)n Simple_repeat Simple_repeat 1 1179 0 24 32 0 0 chr21 24000311 24000342 -10907228 + AT_rich Low_complexity Low_complexity 1 31 0 1703 188 3 3 chr21 24000390 24000693 -10906877 + AluJo SINE Alu 3 305 -7 1074 253 63 46 chr21 24003332 24003869 -10903701 - MLT2B3 LTR ERVL 0 554 12 29 47 0 0 chr21 24004066 24004109 -10903461 + AT_rich Low_complexity Low_complexity 1 43 0 246 301 48 10 chr21 24005160 24005263 -10902307 - MER5B DNA MER1_type 0 178 72 401 319 136 45 chr21 24006596 24007170 -10900400 + L2 LINE L2 2132 2757 -557 3063 68 7 5 chr21 24007563 24007975 -10899595 - L1PA8 LINE L1 0 6172 5760 427 291 11 26 chr21 24008492 24008681 -10898889 + MER5A DNA MER1_type 4 189 0 226 279 25 0 chr21 24008807 24008886 -10898684 - MLT1J LTR MaLR -40 471 391 451 286 135 49 chr21 24008960 24009285 -10898285 - MLT1J LTR MaLR -157 354 2 219 241 0 37 chr21 24009287 24009341 -10898229 + G-rich Low_complexity Low_complexity 4 55 0 299 248 152 19 chr21 24011928 24012033 -10895537 + L2 LINE L2 3183 3301 -12 561 267 77 32 chr21 24012210 24012431 -10895139 + MIR SINE MIR 4 234 -28 267 112 92 0 chr21 24012726 24012824 -10894746 + (TA)n Simple_repeat Simple_repeat 1 107 0 260 96 27 68 chr21 24012875 24012890 -10894680 + (TA)n Simple_repeat Simple_repeat 1 15 -55 725 193 0 0 chr21 24012890 24013076 -10894494 + FLAM_C SINE Alu 1 186 0 260 96 27 68 chr21 24013076 24013132 -10894438 + (TA)n Simple_repeat Simple_repeat 15 70 0 471 261 8 42 chr21 24013424 24013543 -10894027 - L2 LINE L2 -8 3305 3191 25 0 0 0 chr21 24014126 24014151 -10893419 + AT_rich Low_complexity Low_complexity 1 25 0 1085 270 45 0 chr21 24014473 24014762 -10892808 + L1ME3A LINE L1 4981 5282 -864 1644 188 13 16 chr21 24014762 24015070 -10892500 + AluJo SINE Alu 1 307 -5 258 105 0 0 chr21 24015070 24015108 -10892462 + (GGA)n Simple_repeat Simple_repeat 2 39 0 2428 230 45 44 chr21 24015116 24015430 -10892140 + L1ME3A LINE L1 5273 5585 -585 998 197 5 0 chr21 24015430 24015618 -10891952 + MER5A DNA MER1_type 1 189 0 2428 230 45 44 chr21 24015618 24015767 -10891803 + L1ME3A LINE L1 5585 5732 -438 2497 94 37 3 chr21 24015767 24016119 -10891451 + THE1B LTR MaLR 1 364 0 2428 230 45 44 chr21 24016119 24016518 -10891052 + L1ME3A LINE L1 5732 6137 -33 198 0 0 0 chr21 24017011 24017033 -10890537 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 374 103 17 0 chr21 24017184 24017242 -10890328 - THE1C LTR MaLR 0 375 317 20520 28 3 4 chr21 24017242 24018793 -10888777 + L1P1 LINE L1 2780 4324 -1831 2704 26 0 3 chr21 24018793 24019104 -10888466 - AluY SINE Alu -1 310 1 20520 28 3 4 chr21 24019104 24020305 -10887265 + L1P1 LINE L1 4324 5525 -630 550 215 14 69 chr21 24020305 24020449 -10887121 - MER58A DNA MER1_type 0 145 10 954 98 0 0 chr21 24021517 24021649 -10885921 + Alu SINE Alu 173 304 -6 411 315 87 39 chr21 24023342 24023431 -10884139 - L1MDa LINE L1 -4260 2347 2264 2432 104 0 0 chr21 24023431 24023738 -10883832 - AluSq SINE Alu -6 307 1 411 315 87 39 chr21 24023738 24024266 -10883304 - L1MDa LINE L1 -4343 2264 1624 2274 65 3 0 chr21 24024280 24024574 -10882996 - L1PA8 LINE L1 -14 6158 5864 2471 44 0 0 chr21 24024575 24024891 -10882679 + L1PA8 LINE L1 5543 5858 -314 448 286 99 42 chr21 24024898 24025004 -10882566 - L1MDa LINE L1 -4943 1483 1384 1775 148 28 3 chr21 24025004 24025288 -10882282 - AluJb SINE Alu -21 291 1 448 286 99 42 chr21 24025288 24025464 -10882106 - L1MDa LINE L1 -5042 1384 1185 522 274 71 14 chr21 24025474 24025686 -10881884 - L1MDa LINE L1 -5119 1297 1074 1264 179 5 9 chr21 24025686 24025910 -10881660 - AluJo SINE Alu -6 306 84 653 188 36 0 chr21 24025995 24026107 -10881463 + FRAM SINE Alu 36 151 -25 28 0 0 0 chr21 24028509 24028537 -10879033 + AT_rich Low_complexity Low_complexity 1 28 0 2104 86 26 23 chr21 24028622 24028924 -10878646 + AluY SINE Alu 1 303 -8 1777 180 3 0 chr21 24028935 24029224 -10878346 + AluJb SINE Alu 1 290 -22 363 84 56 0 chr21 24030353 24030424 -10877146 - MER96B DNA MER1_type? -238 179 105 444 167 0 0 chr21 24030431 24030497 -10877073 + AluJ/FLAM SINE Alu 1 66 -246 466 260 23 34 chr21 24030497 24030674 -10876896 + L1 LINE L1 2800 2974 -3172 1698 268 26 2 chr21 24030686 24031219 -10876351 + L1PBa LINE L1 6 551 -6312 7714 136 40 2 chr21 24031247 24033172 -10874398 + L1PBa LINE L1 609 2782 -4081 9122 200 8 5 chr21 24033177 24034778 -10872792 + L1 LINE L1 2826 4437 -2425 2894 53 3 3 chr21 24034778 24035133 -10872437 - THE1A LTR MaLR 0 355 1 9122 200 8 5 chr21 24035133 24035570 -10872000 + L1 LINE L1 4437 4871 -1991 959 241 23 9 chr21 24035823 24036043 -10871527 - MER58A DNA MER1_type 0 224 2 180 0 0 0 chr21 24036726 24036746 -10870824 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 2318 91 3 0 chr21 24036752 24037039 -10870531 - AluSp SINE Alu -25 288 1 1534 188 62 75 chr21 24037200 24037669 -10869901 + MLT1C LTR MaLR 1 463 -4 505 277 27 43 chr21 24037785 24037811 -10869759 - MIR SINE MIR -12 250 225 2191 179 47 5 chr21 24037811 24038218 -10869352 - MSTB LTR MaLR -2 424 1 505 277 27 43 chr21 24038218 24038375 -10869195 - MIR SINE MIR -37 225 70 5109 89 14 3 chr21 24038669 24039403 -10868167 + L1PA14 LINE L1 5420 6161 0 2121 122 0 0 chr21 24041990 24042286 -10865284 + AluSx SINE Alu 1 296 -16 2307 105 0 0 chr21 24042592 24042886 -10864684 + AluSg SINE Alu 1 294 -16 21 0 0 0 chr21 24043053 24043074 -10864496 + AT_rich Low_complexity Low_complexity 1 21 0 400 137 41 0 chr21 24043126 24043199 -10864371 + L1MA3 LINE L1 6230 6305 0 21 36 0 0 chr21 24043324 24043352 -10864218 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 24043932 24043953 -10863617 + AT_rich Low_complexity Low_complexity 1 21 0 1201 153 0 59 chr21 24046199 24046421 -10861149 - AluJo SINE Alu -17 295 87 2166 119 3 25 chr21 24046429 24046749 -10860821 - AluSq SINE Alu 0 313 1 2273 119 0 0 chr21 24049515 24049818 -10857752 - AluSx SINE Alu -7 305 3 1712 236 72 14 chr21 24050351 24050777 -10856793 + MLT2B1 LTR ERVL 1 460 -60 261 0 0 0 chr21 24050777 24050806 -10856764 + (TG)n Simple_repeat Simple_repeat 2 30 0 1712 236 72 14 chr21 24050806 24050863 -10856707 + MLT2B1 LTR ERVL 460 512 -8 29 0 0 0 chr21 24051008 24051037 -10856533 + AT_rich Low_complexity Low_complexity 1 29 0 193 213 0 21 chr21 24051662 24051709 -10855861 + MER5A DNA MER1_type 144 189 0 321 133 0 0 chr21 24051717 24051762 -10855808 + MLT1A1 LTR MaLR 1 45 -329 1710 174 3 3 chr21 24051764 24052046 -10855524 + AluJo SINE Alu 1 282 -30 1900 156 51 15 chr21 24052153 24052486 -10855084 + MLT1A1 LTR MaLR 21 365 0 36 62 0 0 chr21 24053245 24053309 -10854261 + AT_rich Low_complexity Low_complexity 1 64 0 366 331 75 33 chr21 24053443 24053896 -10853674 + L2 LINE L2 2419 2890 -424 2218 181 40 32 chr21 24054047 24054545 -10853025 + MLT1D LTR MaLR 4 505 0 558 288 26 30 chr21 24054603 24054836 -10852734 + MIR SINE MIR 15 246 -16 355 344 60 20 chr21 24054856 24055007 -10852563 + L2 LINE L2 3116 3272 0 3372 92 11 2 chr21 24055647 24056094 -10851476 + MLT2A2 LTR ERVL 1 451 -2 2244 101 7 3 chr21 24056569 24056867 -10850703 + AluSq SINE Alu 1 299 -14 191 146 24 0 chr21 24057480 24057521 -10850049 + (TA)n Simple_repeat Simple_repeat 2 43 0 23 0 0 0 chr21 24058213 24058236 -10849334 + AT_rich Low_complexity Low_complexity 1 23 0 1300 154 5 0 chr21 24058238 24058439 -10849131 - AluJb SINE Alu -53 259 58 348 190 0 0 chr21 24058586 24058644 -10848926 - AluJb SINE Alu -244 58 1 2215 88 32 0 chr21 24060007 24060291 -10847279 - AluSx SINE Alu -15 297 5 1700 87 4 49 chr21 24060732 24060996 -10846574 - L1PA8A LINE L1 -181 5950 5699 1133 107 0 0 chr21 24060996 24061153 -10846417 + L1PA8 LINE L1 6014 6172 0 2344 114 0 0 chr21 24061182 24061489 -10846081 + AluSg SINE Alu 1 307 -3 3968 56 4 0 chr21 24062350 24062847 -10844723 + L1PB1 LINE L1 5294 5792 -359 309 169 0 0 chr21 24062858 24062917 -10844653 + (TG)n Simple_repeat Simple_repeat 2 60 0 2650 99 3 0 chr21 24062921 24063286 -10844284 + L1PB1 LINE L1 5783 6148 -3 22 0 0 0 chr21 24063287 24063309 -10844261 + AT_rich Low_complexity Low_complexity 1 22 0 588 284 50 25 chr21 24063493 24063732 -10843838 + LTR16A LTR ERVL 18 262 -188 889 316 47 31 chr21 24063869 24063952 -10843618 + HERV16 LTR ERVL 43 123 -4873 1540 173 30 8 chr21 24063952 24064218 -10843352 + AluJo SINE Alu 35 306 -6 889 316 47 31 chr21 24064218 24064690 -10842880 + HERV16 LTR ERVL 123 607 -4389 666 147 9 9 chr21 24065045 24065154 -10842416 - MLT1B LTR MaLR 0 467 359 290 133 3 17 chr21 24065154 24065214 -10842356 - MLT2B2 LTR ERVL -2 552 458 396 122 44 50 chr21 24065244 24065425 -10842145 + (TAGA)n Simple_repeat Simple_repeat 1 180 0 2665 162 24 22 chr21 24065454 24065948 -10841622 - MLT2B2 LTR ERVL -20 495 1 2141 98 16 23 chr21 24065967 24066274 -10841296 - AluSx SINE Alu -5 307 3 1410 142 20 20 chr21 24066275 24066522 -10841048 - MLT1B LTR MaLR -114 276 30 977 293 46 7 chr21 24066568 24066875 -10840695 + HERV16 LTR ERVL 1033 1351 -3645 301 293 12 0 chr21 24067113 24067195 -10840375 + HERV16 LTR ERVL 1688 1770 -3226 4702 63 3 0 chr21 24067308 24067878 -10839692 + THE1C-int LTR MaLR 1009 1580 0 2015 118 76 28 chr21 24067878 24068234 -10839336 + THE1C LTR MaLR 1 373 -2 1977 300 65 38 chr21 24068254 24069515 -10838055 + HERV16 LTR ERVL 2155 2964 -2032 298 295 42 54 chr21 24069912 24070078 -10837492 - MER5A DNA MER1_type -6 183 20 650 251 92 5 chr21 24070164 24070359 -10837211 - MIR SINE MIR -49 213 2 1617 138 46 19 chr21 24070858 24071118 -10836452 - AluJb SINE Alu -15 297 31 2166 138 0 0 chr21 24071621 24071926 -10835644 - AluSx SINE Alu -7 305 1 2274 109 8 88 chr21 24071956 24072352 -10835218 + THE1B LTR MaLR 1 364 0 1624 201 29 3 chr21 24072392 24072706 -10834864 + L1MB5 LINE L1 5845 6166 -8 495 0 0 0 chr21 24072711 24072766 -10834804 + (TG)n Simple_repeat Simple_repeat 2 56 0 2276 196 36 48 chr21 24072863 24073384 -10834186 + MLT2B3 LTR ERVL 1 515 -39 495 166 13 32 chr21 24073389 24073546 -10834024 + (TAGA)n Simple_repeat Simple_repeat 4 157 0 445 121 0 30 chr21 24073717 24073816 -10833754 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 274 308 77 0 chr21 24076039 24076156 -10831414 + L2 LINE L2 2918 3043 -229 421 249 147 89 chr21 24076264 24076646 -10830924 - MLT1L LTR MaLR -130 485 82 778 145 0 0 chr21 24076677 24076794 -10830776 + FLAM_C SINE Alu 13 129 -14 3204 104 16 11 chr21 24077242 24077693 -10829877 + MLT2A2 LTR ERVL 1 453 0 1666 202 36 55 chr21 24077870 24078340 -10829230 - MLT1C LTR MaLR -1 466 6 1968 107 25 82 chr21 24078427 24078745 -10828825 - AluSx SINE Alu -9 303 4 198 103 0 0 chr21 24078745 24078774 -10828796 + (T)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr21 24079664 24079685 -10827885 + AT_rich Low_complexity Low_complexity 1 21 0 2406 93 3 0 chr21 24081554 24081854 -10825716 - AluSx SINE Alu -11 301 1 1909 202 37 22 chr21 24082131 24082587 -10824983 + MLT1C LTR MaLR 1 463 -4 612 220 14 1 chr21 24082597 24082829 -10824741 + ORSL DNA AcHobo 12 275 0 479 243 34 20 chr21 24083803 24083951 -10823619 + MER103 DNA DNA 15 164 -2 288 304 89 9 chr21 24084652 24084764 -10822806 + MIR3 SINE MIR 86 206 -2 258 32 0 0 chr21 24085963 24085994 -10821576 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 214 338 15 0 chr21 24085996 24086064 -10821506 - L2 LINE L2 -15 3298 3230 1674 128 44 3 chr21 24086740 24087036 -10820534 + L1MA2 LINE L1 5861 6168 -136 516 83 167 0 chr21 24087034 24087118 -10820452 + L1MA3 LINE L1 6208 6305 0 23 0 0 0 chr21 24087118 24087141 -10820429 + AT_rich Low_complexity Low_complexity 1 23 0 310 351 14 7 chr21 24087198 24087346 -10820224 - L2 LINE L2 -941 2373 2225 1703 180 20 3 chr21 24087671 24087971 -10819599 + AluJo SINE Alu 3 307 -5 211 354 21 0 chr21 24087973 24088069 -10819501 - MER5B DNA MER1_type 0 178 81 191 311 49 33 chr21 24088369 24088491 -10819079 + MER5A DNA MER1_type 66 189 0 2649 119 30 2 chr21 24089325 24089752 -10817818 + L1MA2 LINE L1 5859 6297 -7 487 188 26 0 chr21 24090223 24090378 -10817192 + GA-rich Low_complexity Low_complexity 1 159 0 462 326 7 0 chr21 24091035 24091170 -10816400 + L2 LINE L2 3134 3269 -3 337 353 26 7 chr21 24091258 24091413 -10816157 + MIR3 SINE MIR 42 199 -9 1899 143 3 7 chr21 24093665 24093965 -10813605 + AluJb SINE Alu 14 312 0 1243 250 58 64 chr21 24094013 24094669 -10812901 + L1MC5 LINE L1 6877 7528 -433 6791 58 7 0 chr21 24094902 24095747 -10811823 - L1PA6 LINE L1 0 6154 5304 1687 194 3 3 chr21 24096485 24096795 -10810775 + AluJo SINE Alu 1 310 -2 2344 80 0 20 chr21 24096899 24097200 -10810370 + AluSq SINE Alu 1 295 -18 465 238 44 44 chr21 24097374 24097534 -10810036 + MIR SINE MIR 99 258 -4 1037 212 56 58 chr21 24097584 24097926 -10809644 - MER74C LTR ERVL -30 528 111 2322 107 32 59 chr21 24097926 24098300 -10809270 - THE1B LTR MaLR 0 364 1 1037 212 56 58 chr21 24098300 24098408 -10809162 - MER74C LTR ERVL -447 111 4 3053 147 42 54 chr21 24098418 24098706 -10808864 - L1MB5 LINE L1 -12 6162 5872 1885 216 29 16 chr21 24098706 24099091 -10808479 + MLT1B LTR MaLR 1 390 0 3053 147 42 54 chr21 24099091 24099395 -10808175 - L1MB5 LINE L1 -302 5872 5577 241 68 45 0 chr21 24100324 24100368 -10807202 + CT-rich Low_complexity Low_complexity 1 46 0 229 254 15 30 chr21 24100877 24100944 -10806626 + MIR SINE MIR 17 82 -180 553 292 147 57 chr21 24101681 24102122 -10805448 + L2 LINE L2 2224 2704 -610 492 317 23 116 chr21 24102301 24102645 -10804925 + L2 LINE L2 2941 3252 -20 192 77 0 0 chr21 24102654 24102680 -10804890 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 796 206 30 30 chr21 24102755 24102920 -10804650 + FAM SINE Alu 1 165 -20 2069 117 0 3 chr21 24103217 24103523 -10804047 + AluSx SINE Alu 1 305 0 207 139 0 0 chr21 24104648 24104684 -10802886 + (T)n Simple_repeat Simple_repeat 1 36 0 255 274 32 0 chr21 24104914 24104976 -10802594 - L2 LINE L2 -3 3269 3206 7076 63 31 1 chr21 24105310 24106242 -10801328 + L1PA8 LINE L1 5213 6171 -1 188 295 108 65 chr21 24106746 24106885 -10800685 - L2 LINE L2 -604 2710 2566 688 254 109 38 chr21 24106894 24107241 -10800329 + MLT1J1 LTR MaLR 74 445 -1 260 371 61 10 chr21 24107250 24107544 -10800026 - L2 LINE L2 -735 2579 2271 23 0 0 0 chr21 24107674 24107697 -10799873 + AT_rich Low_complexity Low_complexity 1 23 0 224 272 140 37 chr21 24107747 24107883 -10799687 + MIR SINE MIR 48 197 -65 632 240 62 28 chr21 24107984 24108163 -10799407 - MIR SINE MIR -42 220 36 1591 226 73 23 chr21 24109833 24110356 -10797214 + L1M4 LINE L1 4185 4733 -1413 1630 127 31 65 chr21 24110379 24110625 -10796945 - L1MA7 LINE L1 0 6291 6059 2060 104 0 0 chr21 24110625 24110884 -10796686 - AluSx SINE Alu -11 301 43 1630 127 31 65 chr21 24110884 24110991 -10796579 - L1MA7 LINE L1 -232 6059 5950 363 331 7 7 chr21 24110999 24111147 -10796423 - L1M3d LINE L1 -5741 150 3 2361 167 27 75 chr21 24111478 24111958 -10795612 + LTR32 LTR ERVL 15 471 0 526 278 31 81 chr21 24112072 24112295 -10795275 + L3 LINE CR1 1360 1571 -6 789 233 71 14 chr21 24112313 24112523 -10795047 + MIR SINE MIR 41 262 0 22 0 0 0 chr21 24112764 24112786 -10794784 + AT_rich Low_complexity Low_complexity 1 22 0 184 357 24 24 chr21 24113421 24113505 -10794065 - L3 LINE CR1 -115 1462 1379 430 250 12 0 chr21 24113519 24113603 -10793967 + MER33 DNA MER1_type 1 85 -239 1909 157 15 9 chr21 24113603 24113941 -10793629 + L1P4 LINE L1 2605 2944 -3202 7576 127 22 1 chr21 24113942 24115584 -10791986 + L1P4 LINE L1 4127 5796 -378 1530 99 46 113 chr21 24115632 24115934 -10791636 + L1PA11 LINE L1 5754 6035 -139 699 177 177 5 chr21 24115953 24116162 -10791408 + MER33 DNA MER1_type 108 352 -11 220 205 84 36 chr21 24116195 24116278 -10791292 + MER5A DNA MER1_type 103 189 0 21 0 0 0 chr21 24122181 24122202 -10785368 + AT_rich Low_complexity Low_complexity 1 21 0 2062 121 7 3 chr21 24124166 24124456 -10783114 + AluSc SINE Alu 6 296 -13 436 361 30 22 chr21 24124815 24125045 -10782525 + MIR SINE MIR 17 248 -14 406 207 60 17 chr21 24125323 24125439 -10782131 + MLT1C LTR MaLR 2 122 -345 660 72 0 0 chr21 24125441 24125524 -10782046 - L1PB1 LINE L1 -180 5971 5889 1083 140 0 0 chr21 24125527 24125691 -10781879 + L1PB1 LINE L1 5988 6151 0 736 213 14 18 chr21 24125702 24126015 -10781555 + MLT1C LTR MaLR 112 463 -4 683 267 11 0 chr21 24126091 24126267 -10781303 + MER63A DNA MER1_type 13 190 -20 1168 214 14 0 chr21 24127015 24127230 -10780340 + MER20 DNA MER1_type 1 218 -1 1989 176 60 79 chr21 24127368 24127591 -10779979 - MER97a DNA MER1_type? -57 837 611 6674 77 22 30 chr21 24127591 24127845 -10779725 + L1PA10 LINE L1 4879 5134 -1034 6782 52 16 37 chr21 24127845 24128768 -10778802 + SVA Other Other 483 1386 0 6674 77 22 30 chr21 24128768 24129333 -10778237 + L1PA10 LINE L1 5134 5683 -485 2444 80 0 0 chr21 24129333 24129635 -10777935 + AluY SINE Alu 2 303 -8 6674 77 22 30 chr21 24129635 24130115 -10777455 + L1PA10 LINE L1 5683 6166 -2 1989 176 60 79 chr21 24130115 24130437 -10777133 - MER97a DNA MER1_type? -283 611 302 650 219 20 20 chr21 24130450 24130596 -10776974 - MLT1F LTR MaLR -396 146 1 933 112 49 98 chr21 24131766 24131990 -10775580 + L1MA10 LINE L1 6115 6327 -7 8714 78 1 2 chr21 24132141 24134024 -10773546 + L1PA7 LINE L1 4265 6147 -7 21 36 0 0 chr21 24134024 24134052 -10773518 + AT_rich Low_complexity Low_complexity 1 28 0 180 200 0 0 chr21 24134266 24134311 -10773259 + (TG)n Simple_repeat Simple_repeat 2 46 0 2352 99 10 0 chr21 24137342 24137646 -10769924 + AluSx SINE Alu 1 307 -5 1911 146 25 0 chr21 24138151 24138431 -10769139 - AluSx SINE Alu -23 289 3 546 286 138 5 chr21 24139103 24139320 -10768250 - MIR SINE MIR -3 259 14 506 200 58 84 chr21 24140163 24140318 -10767252 + L2 LINE L2 3162 3312 -1 2710 123 0 3 chr21 24140470 24140835 -10766735 + THE1B LTR MaLR 1 364 0 650 297 85 21 chr21 24142282 24142494 -10765076 + MLT1J2 LTR MaLR 1 237 -213 2407 159 56 7 chr21 24142494 24142902 -10764668 - MSTA LTR MaLR 0 428 1 650 297 85 21 chr21 24142902 24142972 -10764598 + MLT1J2 LTR MaLR 237 301 -149 557 333 98 24 chr21 24144082 24144590 -10762980 + HAL1 LINE L1 1217 1762 -745 3346 121 26 46 chr21 24144977 24145592 -10761978 - MER4B LTR ERV1 0 779 1 2764 96 11 16 chr21 24145694 24146071 -10761499 - THE1C LTR MaLR 0 375 1 561 296 48 60 chr21 24146143 24146495 -10761075 + L1M4 LINE L1 3631 3978 -2168 397 272 0 0 chr21 24146812 24146926 -10760644 - L1M4 LINE L1 -1090 5056 4943 260 208 0 0 chr21 24147085 24147133 -10760437 + MER5B DNA MER1_type 78 125 -53 496 259 95 34 chr21 24147632 24147926 -10759644 + L1M4 LINE L1 4991 5302 -844 240 111 0 0 chr21 24147927 24147963 -10759607 + (TA)n Simple_repeat Simple_repeat 2 37 0 1384 193 87 4 chr21 24147963 24148227 -10759343 - AluJb SINE Alu -26 286 1 390 186 0 0 chr21 24148305 24148391 -10759179 + (CA)n Simple_repeat Simple_repeat 1 86 0 574 282 29 6 chr21 24149145 24149319 -10758251 + MIR SINE MIR 52 229 -33 595 257 71 38 chr21 24149321 24149723 -10757847 - MLT1G1 LTR MaLR -12 578 95 514 250 9 9 chr21 24150398 24150514 -10757056 + L3 LINE CR1 782 897 -680 670 260 68 44 chr21 24150639 24150889 -10756681 + L3 LINE CR1 1140 1395 -182 221 273 0 18 chr21 24150897 24150952 -10756618 - MER5B DNA MER1_type -8 170 117 4408 61 14 33 chr21 24150952 24151526 -10756044 + L1PA13 LINE L1 5590 6152 -11 306 294 25 25 chr21 24151565 24151684 -10755886 + MER5B DNA MER1_type 49 167 -11 1650 201 7 0 chr21 24153148 24153452 -10754118 + L1MC1 LINE L1 6022 6327 -6 234 286 0 0 chr21 24153616 24153672 -10753898 + L2 LINE L2 2920 2975 -339 2208 115 3 0 chr21 24153720 24154015 -10753555 - AluSx SINE Alu -12 300 5 361 249 91 53 chr21 24154179 24154474 -10753096 + MLT1H LTR MaLR 81 364 -45 343 165 38 26 chr21 24156118 24156415 -10751155 + (TTAA)n Simple_repeat Simple_repeat 1 300 0 24 0 0 0 chr21 24156415 24156439 -10751131 + AT_rich Low_complexity Low_complexity 1 24 0 1547 161 0 54 chr21 24156988 24157268 -10750302 + AluJo SINE Alu 1 265 -47 2228 116 0 3 chr21 24158455 24158757 -10748813 + AluSc SINE Alu 1 301 -8 360 281 61 18 chr21 24158857 24159021 -10748549 + LTR33 LTR ERVL 29 199 -322 448 225 78 68 chr21 24159148 24159339 -10748231 + LTR33A LTR ERVL 329 521 -2 1793 122 70 31 chr21 24159464 24159751 -10747819 + AluSg SINE Alu 5 302 -8 979 168 0 0 chr21 24159805 24159954 -10747616 + AluJb SINE Alu 140 288 -24 2363 71 3 7 chr21 24160946 24161241 -10746329 + AluSp SINE Alu 1 294 -19 343 314 76 11 chr21 24161298 24161483 -10746087 - MLT1J LTR MaLR 0 511 315 286 289 115 0 chr21 24161536 24161640 -10745930 - MLT1J LTR MaLR -321 190 75 186 133 0 0 chr21 24161756 24161786 -10745784 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 2248 113 0 7 chr21 24163019 24163321 -10744249 + AluSx SINE Alu 1 300 -12 638 259 69 16 chr21 24165356 24165545 -10742025 + L2 LINE L2 3108 3306 -7 2185 120 13 0 chr21 24166008 24166309 -10741261 + AluSq SINE Alu 1 305 -8 1651 174 103 41 chr21 24166313 24166680 -10740890 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr21 24166891 24166913 -10740657 + AT_rich Low_complexity Low_complexity 1 22 0 2937 180 17 4 chr21 24167196 24167724 -10739846 + L1MD3 LINE L1 7449 7983 -12 486 244 67 15 chr21 24168201 24168336 -10739234 - MER58B DNA MER1_type -2 339 198 1080 218 12 24 chr21 24168632 24168884 -10738686 + MLT2D LTR ERVL 2 250 -164 26 50 0 0 chr21 24169653 24169693 -10737877 + AT_rich Low_complexity Low_complexity 1 40 0 375 150 0 25 chr21 24169856 24169936 -10737634 + L1ME4a LINE L1 6044 6121 0 266 307 68 0 chr21 24170753 24170841 -10736729 - L2 LINE L2 -5 3308 3215 320 0 25 0 chr21 24171361 24171401 -10736169 + (TG)n Simple_repeat Simple_repeat 2 42 0 284 261 12 43 chr21 24172543 24172704 -10734866 + (CA)n Simple_repeat Simple_repeat 1 156 0 356 213 0 86 chr21 24172735 24172932 -10734638 + (CA)n Simple_repeat Simple_repeat 1 180 0 394 275 133 14 chr21 24174202 24174420 -10733150 + MIR SINE MIR 2 245 -17 664 201 84 109 chr21 24174448 24174530 -10733040 - MIR SINE MIR -22 240 157 2160 134 0 0 chr21 24174530 24174822 -10732748 - AluSx SINE Alu -20 292 1 664 201 84 109 chr21 24174822 24174978 -10732592 - MIR SINE MIR -105 157 8 1211 211 63 66 chr21 24174982 24175346 -10732224 + MLT1A1 LTR MaLR 3 365 0 721 219 108 62 chr21 24175851 24176052 -10731518 + MLT1C LTR MaLR 15 238 -229 1929 162 0 3 chr21 24176052 24176361 -10731209 + AluJo SINE Alu 1 308 -4 721 219 108 62 chr21 24176361 24176484 -10731086 + MLT1C LTR MaLR 238 354 -113 734 168 8 8 chr21 24177122 24177241 -10730329 - FLAM_A SINE Alu -14 119 1 293 164 0 0 chr21 24178041 24178102 -10729468 + L1ME4a LINE L1 6061 6121 0 1700 163 3 59 chr21 24179527 24179822 -10727748 + AluJo SINE Alu 5 284 -28 321 118 0 0 chr21 24179822 24179873 -10727697 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 1581 219 70 27 chr21 24180790 24181233 -10726337 - MLT1C LTR MaLR 0 467 6 1945 130 42 0 chr21 24182204 24182489 -10725081 + AluSq SINE Alu 1 297 -16 909 132 0 22 chr21 24184830 24184966 -10722604 - FLAM_C SINE Alu 0 133 1 706 278 107 45 chr21 24185085 24185441 -10722129 + L2 LINE L2 2919 3296 -17 773 157 182 19 chr21 24185766 24185925 -10721645 + MER45 DNA AcHobo 1 185 -1396 652 172 9 9 chr21 24185935 24186051 -10721519 + MER45 DNA AcHobo 1466 1581 0 2272 83 23 3 chr21 24186760 24187060 -10720510 + MLT2A1 LTR ERVL 1 306 -138 229 65 0 0 chr21 24187073 24187119 -10720451 + LTR66 LTR ERVL 172 217 -393 326 149 30 0 chr21 24187119 24187186 -10720384 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 315 98 78 0 chr21 24187186 24187237 -10720333 + MLT2A1 LTR ERVL 399 453 0 2216 132 0 0 chr21 24187433 24187735 -10719835 - AluSx SINE Alu -10 302 1 1497 175 83 30 chr21 24187855 24188192 -10719378 - MLT1A1 LTR MaLR -10 355 1 892 238 122 15 chr21 24188203 24188531 -10719039 - LTR16B LTR ERVL -101 363 1 554 314 98 48 chr21 24189516 24189755 -10717815 + L2 LINE L2 2459 2685 -587 1891 103 11 4 chr21 24189755 24190027 -10717543 + AluSx SINE Alu 24 297 -15 554 314 98 48 chr21 24190027 24190385 -10717185 + L2 LINE L2 2685 3024 -248 225 0 0 0 chr21 24190385 24190410 -10717160 + (TC)n Simple_repeat Simple_repeat 2 26 0 273 57 0 0 chr21 24190409 24190444 -10717126 + (TA)n Simple_repeat Simple_repeat 2 36 0 554 314 98 48 chr21 24190410 24190595 -10716975 + L2 LINE L2 3024 3237 -35 495 0 0 0 chr21 24190604 24190659 -10716911 + (TGGA)n Simple_repeat Simple_repeat 1 55 0 577 233 95 64 chr21 24190881 24191177 -10716393 - L1MC4a LINE L1 -1741 6067 5763 1827 130 30 4 chr21 24191207 24191476 -10716094 - AluSx SINE Alu -27 285 10 544 257 104 11 chr21 24191534 24191717 -10715853 + MIR SINE MIR 14 213 -49 1979 101 45 3 chr21 24191866 24192153 -10715417 - AluSx SINE Alu -13 299 1 238 143 24 0 chr21 24192741 24192783 -10714787 - L2 LINE L2 -2 3311 3269 1099 195 14 14 chr21 24192919 24193129 -10714441 - MER20 DNA MER1_type 0 219 10 404 316 26 14 chr21 24193136 24193452 -10714118 - HERV16 LTR ERVL -2202 2794 2434 3072 106 64 135 chr21 24193926 24194585 -10712985 - LTR9 LTR ERV1 0 612 1 318 315 30 30 chr21 24194585 24194750 -10712820 - HERV16 LTR ERVL -3754 2010 1846 534 92 13 0 chr21 24194832 24194908 -10712662 - MADE1 DNA Mariner -3 77 1 567 338 48 57 chr21 24194938 24195277 -10712293 - HERV16 LTR ERVL -3419 1577 1364 1951 121 44 0 chr21 24195277 24195574 -10711996 + AluSx SINE Alu 1 310 -2 567 338 48 57 chr21 24195574 24195908 -10711662 - HERV16 LTR ERVL -3632 1364 1029 2362 91 0 0 chr21 24196913 24197221 -10710349 - AluSq SINE Alu -5 308 1 1477 154 3 75 chr21 24197814 24198120 -10709450 - AluJo SINE Alu 0 312 29 855 123 7 34 chr21 24198149 24198295 -10709275 + AluSq/x SINE Alu 3 144 -169 1786 141 10 17 chr21 24198295 24198594 -10708976 + AluSx SINE Alu 9 305 -7 276 30 0 0 chr21 24198997 24199030 -10708540 + (GA)n Simple_repeat Simple_repeat 1 33 0 46 54 0 0 chr21 24200067 24200141 -10707429 + AT_rich Low_complexity Low_complexity 1 74 0 1792 138 3 28 chr21 24200217 24200536 -10707034 + AluJb SINE Alu 1 312 0 890 134 42 7 chr21 24200579 24200721 -10706849 + MLT2C2 LTR ERVL 175 321 -143 307 339 78 63 chr21 24200944 24201079 -10706491 - L2 LINE L2 -1 3271 3140 2211 126 0 0 chr21 24201079 24201388 -10706182 + AluSx SINE Alu 1 309 -3 307 339 78 63 chr21 24201388 24201571 -10705999 - L2 LINE L2 -132 3140 2948 794 200 26 7 chr21 24201916 24202071 -10705499 + FRAM SINE Alu 2 159 -7 329 277 97 26 chr21 24202158 24202313 -10705257 + MLT1J2 LTR MaLR 283 448 -2 746 312 60 8 chr21 24204271 24204537 -10703033 + L3 LINE CR1 1190 1469 -108 967 92 8 0 chr21 24204732 24204863 -10702707 + L1PA10 LINE L1 6037 6168 0 2305 88 0 7 chr21 24205357 24205663 -10701907 - AluSx SINE Alu -7 305 2 225 0 0 0 chr21 24206134 24206159 -10701411 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 1826 151 32 67 chr21 24207898 24208003 -10699567 + L1MA10 LINE L1 5938 6045 -289 2151 134 45 28 chr21 24208003 24208361 -10699209 + THE1B LTR MaLR 1 364 0 1826 151 32 67 chr21 24208361 24208616 -10698954 + L1MA10 LINE L1 6045 6285 -49 1668 150 10 20 chr21 24208616 24208922 -10698648 - AluJo SINE Alu -9 303 1 1826 151 32 67 chr21 24208922 24208964 -10698606 + L1MA10 LINE L1 6285 6327 -7 1129 130 65 26 chr21 24209300 24209502 -10698068 - L1MA9 LINE L1 0 6312 6098 2113 188 14 3 chr21 24209502 24209863 -10697707 + MLT1A1 LTR MaLR 1 365 0 1129 130 65 26 chr21 24209863 24209891 -10697679 - L1MA9 LINE L1 -214 6098 6073 3828 187 40 25 chr21 24209894 24210500 -10697070 + MER63C DNA MER1_type 80 703 -357 2173 117 0 0 chr21 24210500 24210800 -10696770 + AluSq SINE Alu 1 300 -13 3828 187 40 25 chr21 24210800 24211028 -10696542 + MER63C DNA MER1_type 703 926 -4 1155 124 134 0 chr21 24211409 24211611 -10695959 - AluSg/x SINE Alu -4 306 78 180 328 38 38 chr21 24212658 24212789 -10694781 + L2 LINE L2 2892 3022 -250 2027 132 3 3 chr21 24213154 24213457 -10694113 - AluSx SINE Alu -9 303 1 23 0 0 0 chr21 24213715 24213738 -10693832 + AT_rich Low_complexity Low_complexity 1 23 0 1598 190 30 3 chr21 24213911 24214206 -10693364 + LTR40c LTR ERVL 158 460 -5 1140 156 69 20 chr21 24214395 24214612 -10692958 - MER20 DNA MER1_type 0 219 2 199 293 187 0 chr21 24214858 24214933 -10692637 - MIR SINE MIR -85 177 89 1981 107 31 0 chr21 24215815 24216105 -10691465 + AluSq SINE Alu 1 299 -14 285 29 0 0 chr21 24216105 24216139 -10691431 + (TA)n Simple_repeat Simple_repeat 2 35 0 565 172 155 0 chr21 24216417 24216533 -10691037 - L2 LINE L2 0 3313 3180 595 219 71 60 chr21 24216570 24216753 -10690817 - MIR SINE MIR -50 212 28 24 0 0 0 chr21 24216995 24217019 -10690551 + AT_rich Low_complexity Low_complexity 1 24 0 2167 103 7 0 chr21 24217028 24217330 -10690240 + AluSx SINE Alu 1 304 -8 267 346 90 15 chr21 24218571 24218704 -10688866 + L2 LINE L2 3118 3260 -12 458 185 109 8 chr21 24218802 24218921 -10688649 + L1MD2 LINE L1 6229 6359 0 2221 109 0 3 chr21 24219860 24220171 -10687399 + AluSq SINE Alu 1 310 -3 2083 104 10 0 chr21 24220619 24220916 -10686654 + AluSx SINE Alu 1 300 -12 240 163 0 0 chr21 24220944 24220987 -10686583 - MIR SINE MIR -111 151 109 2066 112 7 3 chr21 24221595 24221898 -10685672 + AluSx SINE Alu 1 304 -8 2473 176 31 10 chr21 24222291 24222779 -10684791 - L1MB3 LINE L1 -15 6168 5671 357 281 11 0 chr21 24223099 24223277 -10684293 + (CA)n Simple_repeat Simple_repeat 1 180 0 247 165 82 71 chr21 24223196 24223366 -10684204 + (CCCCAA)n Simple_repeat Simple_repeat 6 177 0 320 279 17 0 chr21 24223395 24223567 -10684003 + (CA)n Simple_repeat Simple_repeat 1 175 0 349 275 6 22 chr21 24223602 24223784 -10683786 + (CA)n Simple_repeat Simple_repeat 1 179 0 268 306 6 6 chr21 24223921 24224101 -10683469 + (CA)n Simple_repeat Simple_repeat 1 180 0 270 306 6 0 chr21 24224432 24224605 -10682965 + (CA)n Simple_repeat Simple_repeat 2 175 0 1762 49 5 5 chr21 24226185 24226408 -10681162 - L1PB1 LINE L1 0 6151 5929 1083 157 5 39 chr21 24226440 24226644 -10680926 - MER3 DNA MER1_type -1 208 12 30 27 0 0 chr21 24226871 24226908 -10680662 + AT_rich Low_complexity Low_complexity 1 37 0 1727 140 10 7 chr21 24229182 24229474 -10678096 + AluSx SINE Alu 1 293 -19 357 289 60 54 chr21 24229487 24229708 -10677862 - MIR SINE MIR -40 222 3 369 240 50 22 chr21 24229916 24230062 -10677508 - MER5A DNA MER1_type -24 165 1 1561 177 99 33 chr21 24231642 24231860 -10675710 - MLT1B LTR MaLR -4 386 133 2195 89 17 0 chr21 24231860 24232151 -10675419 - AluSg SINE Alu -14 296 1 1561 177 99 33 chr21 24232151 24232294 -10675276 - MLT1B LTR MaLR -257 133 1 1679 171 3 10 chr21 24232343 24232642 -10674928 + AluJb SINE Alu 1 297 -15 803 59 0 0 chr21 24232643 24232791 -10674779 + AluY SINE Alu 181 328 0 2109 91 7 0 chr21 24233812 24234108 -10673462 - AluSp SINE Alu -3 310 13 316 316 79 0 chr21 24234692 24234806 -10672764 - L2 LINE L2 0 3272 3150 522 247 0 0 chr21 24234923 24235101 -10672469 + G-rich Low_complexity Low_complexity 1 178 0 231 228 40 0 chr21 24235115 24235216 -10672354 + G-rich Low_complexity Low_complexity 5 109 0 2287 107 54 12 chr21 24235272 24235608 -10671962 + MER48 LTR ERV1 38 387 0 1645 171 7 19 chr21 24236154 24236463 -10671107 + AluJo SINE Alu 1 305 -7 1950 113 31 7 chr21 24236943 24237236 -10670334 + AluSx SINE Alu 6 305 -7 677 259 0 0 chr21 24237281 24237428 -10670142 + AluJb SINE Alu 135 281 -31 491 258 45 8 chr21 24237456 24237588 -10669982 - MIR SINE MIR -103 159 23 21 36 0 0 chr21 24238507 24238535 -10669035 + AT_rich Low_complexity Low_complexity 1 28 0 1804 227 79 72 chr21 24239160 24239767 -10667803 - MLT1E3 LTR MaLR 0 624 14 300 287 87 13 chr21 24240144 24240371 -10667199 - MLT1L LTR MaLR -13 602 350 1409 194 63 18 chr21 24240475 24240871 -10666699 + L1MB7 LINE L1 3573 3986 -2160 6358 123 22 19 chr21 24240909 24241825 -10665745 - L1MA7 LINE L1 0 6291 5359 1992 124 7 7 chr21 24241825 24242131 -10665439 - AluSx SINE Alu -6 306 1 6358 123 22 19 chr21 24242131 24242433 -10665137 - L1MA7 LINE L1 -932 5359 5060 3404 150 46 73 chr21 24242425 24242947 -10664623 + L1MB7 LINE L1 4948 5483 -701 2156 118 0 0 chr21 24242947 24243244 -10664326 - AluSx SINE Alu -15 297 1 3404 150 46 73 chr21 24243244 24243873 -10663697 + L1MB7 LINE L1 5483 6164 -20 2286 84 0 7 chr21 24243873 24244169 -10663401 - AluSc SINE Alu -15 294 1 3404 150 46 73 chr21 24244169 24244189 -10663381 + L1MB7 LINE L1 6164 6183 -1 2115 99 0 0 chr21 24244553 24244864 -10662706 + AluSx SINE Alu 1 311 0 1632 159 14 17 chr21 24245679 24245975 -10661595 - AluJo SINE Alu -13 299 5 979 184 26 66 chr21 24246742 24246923 -10660647 - MER58A DNA MER1_type -2198 222 50 2128 93 3 16 chr21 24246923 24247233 -10660337 + AluSx SINE Alu 1 306 -6 979 184 26 66 chr21 24247233 24247279 -10660291 - MER58A DNA MER1_type -2370 50 4 2239 105 0 0 chr21 24247615 24247920 -10659650 + AluSx SINE Alu 3 307 -5 2032 121 0 16 chr21 24248875 24249182 -10658388 - AluSx SINE Alu -10 302 1 1745 142 0 45 chr21 24249575 24249886 -10657684 - AluJo SINE Alu -7 305 9 1996 124 7 0 chr21 24249996 24250286 -10657284 + AluSx SINE Alu 13 304 -8 904 176 0 33 chr21 24250436 24250618 -10656952 + FRAM SINE Alu 1 169 -7 1622 221 25 53 chr21 24250727 24251201 -10656369 + MLT1C LTR MaLR 6 466 -1 603 205 84 54 chr21 24251486 24251652 -10655918 - MER58B DNA MER1_type 0 341 171 2819 155 33 11 chr21 24251664 24252186 -10655384 + L1MB4 LINE L1 5645 6177 -3 1900 130 18 3 chr21 24252208 24252493 -10655077 - AluSx SINE Alu -23 289 1 195 323 16 0 chr21 24252856 24252918 -10654652 + MIR SINE MIR 70 132 -76 2120 114 3 0 chr21 24254009 24254307 -10653263 - AluSx SINE Alu -13 299 1 1596 171 4 7 chr21 24254517 24254798 -10652772 + AluJo SINE Alu 3 282 -30 404 174 52 104 chr21 24255599 24255644 -10651926 - MER5A DNA MER1_type -77 112 66 1845 95 26 52 chr21 24255644 24255656 -10651914 - AluSx SINE Alu -15 297 286 198 91 0 0 chr21 24255656 24255689 -10651881 + (TG)n Simple_repeat Simple_repeat 2 34 0 1845 95 26 52 chr21 24255689 24255981 -10651589 - AluSx SINE Alu -26 286 1 404 174 52 104 chr21 24255981 24256050 -10651520 - MER5A DNA MER1_type -123 66 4 1822 118 3 45 chr21 24256370 24256683 -10650887 + AluSx SINE Alu 1 300 -12 2290 77 3 0 chr21 24256705 24257002 -10650568 - AluSp SINE Alu -15 298 1 1890 160 0 7 chr21 24257007 24257314 -10650256 - AluSx SINE Alu -7 305 1 1588 93 64 119 chr21 24258052 24258364 -10649206 + AluSp SINE Alu 1 295 -18 2092 112 6 13 chr21 24259123 24259437 -10648133 + AluSx SINE Alu 1 312 0 565 210 70 6 chr21 24259539 24259696 -10647874 + MER5B DNA MER1_type 12 178 0 401 310 38 5 chr21 24260423 24260575 -10646995 + MIR SINE MIR 37 192 -59 1566 117 0 55 chr21 24260634 24260673 -10646897 - AluJo SINE Alu -7 305 265 2363 140 32 67 chr21 24260673 24261137 -10646433 - MER83 LTR ERV1 0 448 1 1566 117 0 55 chr21 24261137 24261371 -10646199 - AluJo SINE Alu -47 265 47 2072 105 0 7 chr21 24261450 24261745 -10645825 - AluSc SINE Alu -16 293 1 21 0 0 0 chr21 24261751 24261772 -10645798 + AT_rich Low_complexity Low_complexity 1 21 0 1283 168 25 82 chr21 24264338 24264653 -10642917 - AluJo SINE Alu -1 301 5 1364 199 15 33 chr21 24266437 24266773 -10640797 - L1MB4 LINE L1 -1 6179 5850 3166 145 23 7 chr21 24266925 24267485 -10640085 + L1MA8 LINE L1 5722 6290 -1 2406 87 0 0 chr21 24267487 24267798 -10639772 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr21 24267799 24267820 -10639750 + AT_rich Low_complexity Low_complexity 1 21 0 2249 85 10 0 chr21 24267881 24268175 -10639395 + AluSq SINE Alu 1 297 -16 220 195 0 0 chr21 24269703 24269744 -10637826 + (CAAGA)n Simple_repeat Simple_repeat 2 42 0 2509 64 0 0 chr21 24271043 24271354 -10636216 + AluY SINE Alu 1 311 0 29 47 0 0 chr21 24272540 24272583 -10634987 + AT_rich Low_complexity Low_complexity 1 43 0 735 168 15 29 chr21 24272987 24273124 -10634446 + AluJo SINE Alu 2 136 -176 1777 157 7 0 chr21 24273145 24273438 -10634132 + AluSx SINE Alu 1 295 -17 735 190 7 0 chr21 24274281 24274423 -10633147 - LTR53 LTR ERVL -11 508 366 320 176 0 95 chr21 24274516 24274590 -10632980 - MER58B DNA MER1_type -235 106 40 517 289 31 0 chr21 24275205 24275333 -10632237 - L2 LINE L2 -3 3269 3138 663 272 34 29 chr21 24276577 24276783 -10630787 - MER3 DNA MER1_type 0 209 3 1878 144 7 3 chr21 24277139 24277437 -10630133 + AluSx SINE Alu 2 300 -12 1847 118 6 54 chr21 24277873 24278186 -10629384 + AluSg SINE Alu 1 298 -12 585 139 0 0 chr21 24278202 24278310 -10629260 + (GGGA)n Simple_repeat Simple_repeat 4 111 0 1437 104 0 10 chr21 24278882 24279084 -10628486 - AluSq SINE Alu -13 300 101 2216 104 0 0 chr21 24279437 24279736 -10627834 + AluSx SINE Alu 1 299 -13 354 259 37 0 chr21 24279770 24279851 -10627719 + MIR3 SINE MIR 124 207 -1 351 118 88 0 chr21 24279880 24279948 -10627622 + L1ME2 LINE L1 6091 6164 0 442 108 95 0 chr21 24280114 24280188 -10627382 + L1MB2 LINE L1 6069 6149 -22 23 78 0 0 chr21 24282160 24282211 -10625359 + AT_rich Low_complexity Low_complexity 1 51 0 2037 112 0 35 chr21 24282429 24282740 -10624830 + AluSx SINE Alu 1 300 -12 22 35 0 0 chr21 24282824 24282853 -10624717 + AT_rich Low_complexity Low_complexity 1 29 0 240 268 84 42 chr21 24282917 24282988 -10624582 - MIR3 SINE MIR -23 185 112 401 250 165 27 chr21 24283157 24283381 -10624189 + MLT1J LTR MaLR 1 255 -256 2055 145 3 0 chr21 24286718 24287021 -10620549 - AluJb SINE Alu -7 305 2 293 117 167 0 chr21 24287468 24287528 -10620042 - Tigger3(Golem) DNA MER2_type -197 2832 2763 760 161 8 0 chr21 24287529 24287659 -10619911 + FLAM_C SINE Alu 2 132 -11 467 291 0 0 chr21 24287740 24287857 -10619713 + L1M4 LINE L1 4581 4697 -1449 882 205 84 25 chr21 24287858 24288097 -10619473 + L1M4 LINE L1 4728 4980 -1166 1514 143 49 65 chr21 24288382 24288690 -10618880 + AluJb SINE Alu 1 303 -9 1202 123 0 0 chr21 24288736 24288907 -10618663 + AluSg/x SINE Alu 135 305 -5 1594 59 0 0 chr21 24289368 24289555 -10618015 + AluSg/x SINE Alu 113 299 -11 2179 95 26 7 chr21 24289578 24289884 -10617686 + AluSx SINE Alu 1 312 0 732 226 72 68 chr21 24291045 24291280 -10616290 + L1MC3 LINE L1 7072 7307 -478 1289 104 21 26 chr21 24291368 24291455 -10616115 + MER2 DNA MER2_type 1 87 -257 2114 161 88 5 chr21 24291455 24291866 -10615704 - MER65A LTR ERV1 0 445 1 1289 104 21 26 chr21 24291866 24291970 -10615600 + MER2 DNA MER2_type 87 191 -153 788 152 14 0 chr21 24291970 24292108 -10615462 - LTR5 LTR ERVK 0 969 830 2459 151 55 5 chr21 24292209 24292627 -10614943 + MER49 LTR ERV1 1 439 -484 2019 161 16 81 chr21 24292634 24292695 -10614875 + LTR19A LTR ERV1 12 75 -411 2256 89 0 0 chr21 24292695 24292999 -10614571 + AluY SINE Alu 1 304 0 2019 161 16 81 chr21 24292999 24293444 -10614126 + LTR19A LTR ERV1 75 486 0 1068 107 0 0 chr21 24293444 24293593 -10613977 + LTR19A-int LTR ERV1 1 149 -5437 2841 99 3 15 chr21 24293595 24293987 -10613583 + LTR19A-int LTR ERV1 279 665 -4921 1697 181 31 6 chr21 24293987 24294375 -10613195 + LTR19A LTR ERV1 120 486 0 2903 123 20 43 chr21 24294375 24294832 -10612738 + MER49 LTR ERV1 437 884 -39 2433 48 41 0 chr21 24294832 24295122 -10612448 - AluY SINE Alu -9 302 1 2903 123 20 43 chr21 24295122 24295151 -10612419 + MER49 LTR ERV1 884 912 -11 2268 164 78 75 chr21 24295185 24295412 -10612158 + MER67B LTR ERV1 87 312 -349 2206 117 0 3 chr21 24295412 24295719 -10611851 + AluSq SINE Alu 1 306 -7 2268 164 78 75 chr21 24295719 24296064 -10611506 + MER67B LTR ERV1 312 661 0 1855 114 78 9 chr21 24296336 24296670 -10610900 - L1PA16 LINE L1 0 6166 5810 714 108 0 10 chr21 24296709 24296811 -10610759 + U6 snRNA snRNA 1 101 -6 23 0 0 0 chr21 24297461 24297484 -10610086 + AT_rich Low_complexity Low_complexity 1 23 0 2141 209 39 10 chr21 24297802 24298284 -10609286 + L1MD2 LINE L1 5864 6359 0 988 203 35 0 chr21 24298375 24298577 -10608993 + MER3 DNA MER1_type 1 209 0 2546 147 60 29 chr21 24298636 24298679 -10608891 + LOR1a LTR ERV1 1 41 -456 2218 80 6 71 chr21 24298679 24299004 -10608566 - AluSg1 SINE Alu -5 304 1 2546 147 60 29 chr21 24299004 24299442 -10608128 + LOR1a LTR ERV1 41 497 0 429 154 8 103 chr21 24300876 24300993 -10606577 - L1MD2 LINE L1 -69 6288 6068 243 0 0 0 chr21 24301018 24301045 -10606525 + (T)n Simple_repeat Simple_repeat 1 27 0 253 312 31 0 chr21 24303910 24304006 -10603564 + MIR SINE MIR 59 157 -105 1368 95 0 0 chr21 24304039 24304208 -10603362 + AluSg/x SINE Alu 129 297 -13 25 31 0 0 chr21 24304433 24304465 -10603105 + AT_rich Low_complexity Low_complexity 1 32 0 309 109 0 0 chr21 24304494 24304540 -10603030 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 1879 109 0 0 chr21 24304552 24304790 -10602780 - AluSq SINE Alu -75 238 1 806 218 60 34 chr21 24305130 24305396 -10602174 - LTR37A LTR ERV1 0 426 154 226 306 58 41 chr21 24305470 24305712 -10601858 + L2 LINE L2 1073 1318 -1996 249 307 107 9 chr21 24305805 24306020 -10601550 + L2 LINE L2 1462 1697 -1617 1489 225 46 80 chr21 24306021 24306635 -10600935 + L1M4 LINE L1 2755 3341 -2805 1969 126 21 0 chr21 24306635 24306921 -10600649 + AluSx SINE Alu 1 292 -20 1489 225 46 80 chr21 24306921 24307055 -10600515 + L1M4 LINE L1 3341 3478 -2668 658 202 93 82 chr21 24308592 24308993 -10598577 + MLT1C LTR MaLR 2 432 -35 1992 104 68 0 chr21 24308993 24309272 -10598298 - AluSx SINE Alu -14 298 1 658 202 93 82 chr21 24309272 24309309 -10598261 + MLT1C LTR MaLR 432 467 0 220 290 0 0 chr21 24309736 24309805 -10597765 + T-rich Low_complexity Low_complexity 1 69 0 2301 131 88 10 chr21 24309959 24310356 -10597214 + MSTA LTR MaLR 1 428 0 884 305 43 54 chr21 24310439 24310976 -10596594 + LTR59-int LTR ERV1 3388 3918 -729 1991 171 0 0 chr21 24311019 24311328 -10596242 + AluJo SINE Alu 3 311 -1 630 337 21 54 chr21 24311453 24311711 -10595859 + LTR59-int LTR ERV1 4058 4300 -347 1731 121 3 115 chr21 24311711 24312051 -10595519 + AluSx SINE Alu 1 302 0 630 337 21 54 chr21 24312051 24312181 -10595389 + LTR59-int LTR ERV1 4300 4433 -214 204 40 0 0 chr21 24312769 24312794 -10594776 + (T)n Simple_repeat Simple_repeat 1 25 0 2084 139 7 3 chr21 24313185 24313494 -10594076 + AluSx SINE Alu 1 310 -2 2225 122 0 3 chr21 24313898 24314202 -10593368 + AluSx SINE Alu 4 306 -6 1148 133 18 0 chr21 24314204 24314369 -10593201 + AluSg/x SINE Alu 134 301 -9 816 172 0 77 chr21 24315178 24315347 -10592223 + AluJo SINE Alu 12 167 -145 1152 136 0 0 chr21 24315665 24315820 -10591750 - AluSq SINE Alu -158 155 1 3217 201 49 27 chr21 24315824 24316738 -10590832 - L1 LINE L1 -3280 4285 3330 2216 125 0 0 chr21 24316738 24317041 -10590529 + AluSg SINE Alu 1 303 -7 3217 201 49 27 chr21 24317041 24317437 -10590133 - L1 LINE L1 -4235 3330 2944 1049 246 68 8 chr21 24318249 24318497 -10589073 + MLT1H1 LTR MaLR 292 554 -1 2004 121 147 46 chr21 24318727 24318770 -10588800 + MSTC LTR MaLR 1 38 -390 1760 155 0 0 chr21 24318770 24319034 -10588536 + AluSx SINE Alu 47 310 -2 2004 121 147 46 chr21 24319034 24319379 -10588191 + MSTC LTR MaLR 38 428 0 1482 191 0 60 chr21 24319400 24319719 -10587851 - AluJo SINE Alu -12 300 1 416 263 84 28 chr21 24319789 24320002 -10587568 + L1ME4a LINE L1 5611 5835 -286 1543 192 10 16 chr21 24320073 24320385 -10587185 - AluJb SINE Alu 0 312 3 2063 108 11 0 chr21 24320625 24320926 -10586644 - AluSq SINE Alu 0 308 5 2279 98 0 10 chr21 24321128 24321423 -10586147 + AluSx SINE Alu 1 292 -20 3221 135 60 25 chr21 24321423 24321985 -10585585 + LTR59 LTR ERV1 8 589 -8 508 258 44 32 chr21 24322078 24322331 -10585239 + LTR59-int LTR ERV1 133 470 -6128 23 0 0 0 chr21 24322551 24322574 -10584996 + AT_rich Low_complexity Low_complexity 1 23 0 531 0 0 0 chr21 24322587 24322646 -10584924 + (TA)n Simple_repeat Simple_repeat 2 60 0 1080 167 4 70 chr21 24322646 24322874 -10584696 - AluJb SINE Alu -15 297 85 313 154 0 0 chr21 24322874 24322926 -10584644 + MER4D LTR ERV1 309 360 -512 730 153 30 23 chr21 24322953 24323084 -10584486 + LTR29 LTR ERV1 491 622 0 1462 192 27 70 chr21 24323087 24323257 -10584313 + LTR29-int LTR ERV1 3 179 -5767 1877 166 0 25 chr21 24323257 24323577 -10583993 - AluJb SINE Alu 0 312 1 1462 192 27 70 chr21 24323577 24323756 -10583814 + LTR29-int LTR ERV1 179 364 -5582 2708 165 28 42 chr21 24323756 24324260 -10583310 + LOR1a LTR ERV1 1 497 0 1462 192 27 70 chr21 24324260 24324353 -10583217 + LTR29-int LTR ERV1 364 1328 -4618 761 238 45 8 chr21 24324388 24324658 -10582912 + LTR29-int LTR ERV1 361 1476 -4470 2257 104 10 0 chr21 24324676 24324985 -10582585 - AluSp SINE Alu -1 312 1 383 171 40 13 chr21 24324986 24325062 -10582508 + MER4B-int LTR ERV1 768 845 -5486 726 159 13 40 chr21 24325031 24325182 -10582388 + MER4B-int LTR ERV1 1483 1629 -3251 1909 102 23 0 chr21 24325197 24325461 -10582109 + MER41A LTR ERV1 285 554 0 651 165 21 138 chr21 24325464 24325595 -10581975 + MER4B-int LTR ERV1 1124 1269 -5489 1961 154 0 3 chr21 24325595 24325887 -10581683 + AluSx SINE Alu 11 301 -11 651 165 21 138 chr21 24325887 24326074 -10581496 + MER4B-int LTR ERV1 1269 4232 -2526 2044 134 3 3 chr21 24326079 24326378 -10581192 + AluSp SINE Alu 1 299 -14 1144 136 17 11 chr21 24326378 24326554 -10581016 + AluSg/x SINE Alu 132 308 -1 422 95 40 27 chr21 24326556 24326630 -10580940 + MER4B-int LTR ERV1 4187 4261 -2497 3088 153 37 34 chr21 24326659 24327012 -10580558 + MER4B-int LTR ERV1 4250 4607 -2151 1708 187 94 85 chr21 24327012 24327509 -10580061 + MER4A LTR ERV1 1 507 -157 2010 152 3 0 chr21 24327509 24327806 -10579764 - AluSx SINE Alu -14 298 1 1708 187 94 85 chr21 24327806 24327966 -10579604 + MER4A LTR ERV1 507 664 0 3088 153 37 34 chr21 24327966 24328201 -10579369 + MER4B-int LTR ERV1 4607 4840 -1918 928 164 6 18 chr21 24328206 24328377 -10579193 - THE1C LTR MaLR 0 375 207 8613 78 10 2 chr21 24328377 24329485 -10578085 + HUERS-P3b LTR ERV1 1526 2642 -4776 2270 182 29 40 chr21 24329486 24329500 -10578070 - LTR8 LTR ERV1 -251 440 427 9187 40 3 1 chr21 24329500 24330569 -10577001 + MER11C LTR ERVK 1 1071 0 2270 182 29 40 chr21 24330569 24330824 -10576746 - LTR8 LTR ERV1 -264 427 175 1953 75 24 4 chr21 24330824 24331077 -10576493 + AluY SINE Alu 37 294 -17 2270 182 29 40 chr21 24331077 24331251 -10576319 - LTR8 LTR ERV1 -516 175 1 2116 89 40 60 chr21 24331251 24331598 -10575972 + HUERS-P3b LTR ERV1 3073 3412 -4006 12507 96 15 19 chr21 24331591 24332673 -10574897 + HUERS-P3b LTR ERV1 3973 5058 -2360 2168 116 0 10 chr21 24332673 24332966 -10574604 + AluSq SINE Alu 1 290 -23 12507 96 15 19 chr21 24332966 24333116 -10574454 + HUERS-P3b LTR ERV1 5058 6405 -1013 9777 82 14 5 chr21 24333117 24334402 -10573168 + HUERS-P3b LTR ERV1 5398 6694 -724 1895 152 202 58 chr21 24334432 24334911 -10572659 + LTR10A LTR ERV1 1 548 -61 840 213 57 54 chr21 24334916 24335249 -10572321 + Harlequin LTR ERV1 1 319 -6330 476 261 91 76 chr21 24335250 24335612 -10571958 + Harlequin LTR ERV1 283 672 -5977 9236 174 67 59 chr21 24335711 24339413 -10568157 + Harlequin LTR ERV1 840 7606 -179 1639 202 48 53 chr21 24339488 24339884 -10567686 + LTR2 LTR ERV1 41 434 -15 484 279 14 14 chr21 24339884 24340031 -10567539 + Harlequin LTR ERV1 7621 7767 -18 296 167 56 0 chr21 24340051 24340105 -10567465 + LTR10A LTR ERV1 1 57 -552 1961 113 80 29 chr21 24340153 24340515 -10567055 + LTR10A LTR ERV1 183 609 0 2821 145 0 0 chr21 24340516 24340936 -10566634 + HUERS-P3 LTR ERV1 8499 8918 -1 1648 73 0 18 chr21 24340936 24341155 -10566415 + LTR9B LTR ERV1 1 215 -429 3441 170 39 23 chr21 24341226 24341891 -10565679 + MER50 LTR ERV1 1 676 -58 750 141 5 38 chr21 24341898 24342083 -10565487 + GA-rich Low_complexity Low_complexity 1 179 0 2197 103 0 3 chr21 24342205 24342506 -10565064 + AluSq SINE Alu 1 300 -13 309 246 67 52 chr21 24342867 24343001 -10564569 - MIR SINE MIR -4 258 123 353 152 0 0 chr21 24343213 24343272 -10564298 - AluSp/q SINE Alu -6 297 239 1034 192 15 0 chr21 24343265 24343463 -10564107 - MER50 LTR ERV1 -533 201 1 2081 110 0 10 chr21 24343516 24343825 -10563745 + AluSg SINE Alu 1 306 -4 213 39 0 0 chr21 24343840 24343866 -10563704 + (CA)n Simple_repeat Simple_repeat 1 26 0 2093 192 48 34 chr21 24343866 24344341 -10563229 + MER50 LTR ERV1 253 734 0 1926 140 27 0 chr21 24344404 24344704 -10562866 - AluSx SINE Alu -4 308 1 363 188 168 60 chr21 24345026 24345175 -10562395 + MLT1D LTR MaLR 139 303 -202 388 241 50 9 chr21 24345215 24345352 -10562218 + MLT1E2 LTR MaLR 511 624 -2 1479 128 7 91 chr21 24345380 24345676 -10561894 - AluSx SINE Alu 0 312 42 1601 183 17 7 chr21 24345694 24345994 -10561576 - AluJo SINE Alu -5 307 5 371 283 50 25 chr21 24345994 24346114 -10561456 - L1MC4a LINE L1 -1918 5890 5768 22 0 0 0 chr21 24346209 24346231 -10561339 + AT_rich Low_complexity Low_complexity 1 22 0 1574 148 126 11 chr21 24346309 24346580 -10560990 - AluJb SINE Alu 0 302 1 1786 152 0 7 chr21 24346610 24346899 -10560671 - AluJb SINE Alu -24 288 2 1561 182 7 10 chr21 24346964 24347255 -10560315 - AluJo SINE Alu -22 290 1 26 0 0 0 chr21 24347321 24347347 -10560223 + AT_rich Low_complexity Low_complexity 1 26 0 759 209 22 0 chr21 24347366 24347505 -10560065 + MER82 DNA MER2_type 2 143 -510 2052 208 79 2 chr21 24347914 24348061 -10559509 + MER82 DNA MER2_type 199 333 -320 2088 115 0 3 chr21 24348061 24348356 -10559214 + AluSx SINE Alu 4 297 -15 2052 208 79 2 chr21 24348356 24348626 -10558944 + MER82 DNA MER2_type 333 648 -5 198 0 0 0 chr21 24348676 24348698 -10558872 + (T)n Simple_repeat Simple_repeat 1 22 0 2372 65 0 10 chr21 24348730 24349036 -10558534 + AluY SINE Alu 1 303 -8 543 207 118 57 chr21 24349309 24349589 -10557981 - MER33 DNA MER1_type -22 302 6 27 29 0 0 chr21 24349648 24349682 -10557888 + AT_rich Low_complexity Low_complexity 1 34 0 1690 177 0 19 chr21 24349825 24350176 -10557394 - AluJb SINE Alu 0 346 2 1570 144 0 97 chr21 24350195 24350515 -10557055 - AluJo SINE Alu -23 289 1 1075 200 91 37 chr21 24350599 24351048 -10556522 + MLT1F LTR MaLR 1 542 0 1983 114 4 0 chr21 24351078 24351359 -10556211 + AluSx SINE Alu 5 286 -26 1545 156 84 4 chr21 24351465 24351728 -10555842 + AluJb SINE Alu 1 284 -18 27 62 0 0 chr21 24351945 24351993 -10555577 + AT_rich Low_complexity Low_complexity 1 48 0 1527 174 49 34 chr21 24352043 24352079 -10555491 + L1MB8 LINE L1 5840 5874 -304 1804 153 0 10 chr21 24352079 24352387 -10555183 + AluJb SINE Alu 1 305 -7 1527 174 49 34 chr21 24352387 24352678 -10554892 + L1MB8 LINE L1 5874 6172 -6 1349 165 102 4 chr21 24353097 24353408 -10554162 + AluJb SINE Alu 3 338 0 2369 136 30 26 chr21 24353506 24353932 -10553638 - MSTC LTR MaLR 0 428 1 1609 167 26 95 chr21 24354005 24354395 -10553175 + MLT1A1 LTR MaLR 3 365 0 1881 122 0 67 chr21 24354416 24354728 -10552842 + AluSx SINE Alu 1 291 -21 1464 147 61 36 chr21 24354763 24355042 -10552528 + AluJo SINE Alu 14 299 -13 1425 189 134 57 chr21 24355125 24355255 -10552315 + MLT1C LTR MaLR 17 136 -331 2140 112 7 0 chr21 24355255 24355558 -10552012 + AluSx SINE Alu 1 305 -7 1425 189 134 57 chr21 24355558 24355846 -10551724 + MLT1C LTR MaLR 136 467 0 262 302 76 8 chr21 24356164 24356283 -10551287 - L1ME LINE L1 -503 5618 5492 754 236 45 41 chr21 24357227 24357469 -10550101 - MIR SINE MIR 0 262 20 1482 147 118 0 chr21 24357739 24358011 -10549559 - AluSq SINE Alu -9 304 1 1722 111 32 4 chr21 24358020 24358273 -10549297 - AluSc SINE Alu -49 260 1 501 259 90 21 chr21 24358398 24358587 -10548983 - MLT1C LTR MaLR -9 458 257 1145 199 113 11 chr21 24358556 24358838 -10548732 - MLT1D LTR MaLR -190 315 5 1087 152 0 0 chr21 24358867 24359038 -10548532 - AluSc SINE Alu -2 307 137 237 33 0 0 chr21 24359038 24359068 -10548502 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1882 99 0 45 chr21 24359068 24359360 -10548210 - AluY SINE Alu -21 290 12 424 319 93 13 chr21 24359498 24359724 -10547846 + L2 LINE L2 1459 1702 -1612 409 203 24 24 chr21 24359732 24359850 -10547720 + L1M4 LINE L1 2762 2880 -3262 1898 150 16 0 chr21 24359850 24360157 -10547413 + AluSx SINE Alu 1 312 0 189 74 0 0 chr21 24360187 24360214 -10547356 + (TGGGGG)n Simple_repeat Simple_repeat 3 29 0 24 0 0 0 chr21 24360215 24360239 -10547331 + GC_rich Low_complexity Low_complexity 1 24 0 212 68 0 68 chr21 24360467 24360511 -10547059 + (TCC)n Simple_repeat Simple_repeat 3 43 0 252 77 0 0 chr21 24362076 24362115 -10545455 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 665 204 114 43 chr21 24362117 24362441 -10545129 + L1M4 LINE L1 2931 3277 -2869 23 0 0 0 chr21 24363267 24363290 -10544280 + AT_rich Low_complexity Low_complexity 1 23 0 1259 145 24 96 chr21 24363325 24363484 -10544086 + AluJo SINE Alu 1 125 -187 2356 73 3 0 chr21 24363484 24363785 -10543785 + AluSg SINE Alu 1 302 -8 1259 145 24 96 chr21 24363785 24363957 -10543613 + AluJo SINE Alu 125 308 -4 2177 89 10 3 chr21 24364012 24364303 -10543267 - AluSg SINE Alu -15 295 3 893 108 61 0 chr21 24366339 24366487 -10541083 + AluSg/x SINE Alu 138 294 -16 361 319 80 0 chr21 24366803 24366911 -10540659 + MER5A DNA MER1_type 8 135 -54 2113 110 0 0 chr21 24366911 24367219 -10540351 + AluSx SINE Alu 2 309 -3 361 319 80 0 chr21 24367219 24367273 -10540297 + MER5A DNA MER1_type 135 183 -6 294 169 77 15 chr21 24367292 24367357 -10540213 + MER5A DNA MER1_type 6 74 -115 2044 112 30 0 chr21 24367358 24367661 -10539909 + AluSx SINE Alu 1 312 0 549 44 0 0 chr21 24367661 24367729 -10539841 + (GGAA)n Simple_repeat Simple_repeat 4 71 0 689 188 8 16 chr21 24367729 24367857 -10539713 + MER5A DNA MER1_type 63 189 0 321 47 0 0 chr21 24368268 24368311 -10539259 + (TTTAG)n Simple_repeat Simple_repeat 3 45 0 1975 122 0 7 chr21 24368328 24368614 -10538956 - AluSq SINE Alu -29 284 1 2210 114 3 0 chr21 24368898 24369206 -10538364 - AluSx SINE Alu 0 312 4 379 299 22 30 chr21 24369285 24369419 -10538151 - L2 LINE L2 -13 3300 3168 2184 115 7 0 chr21 24369541 24369846 -10537724 - AluSx SINE Alu -5 307 1 785 169 0 22 chr21 24369890 24370026 -10537544 + FLAM_C SINE Alu 1 133 0 2059 118 3 7 chr21 24370046 24370351 -10537219 - AluSx SINE Alu -6 306 3 2372 74 0 3 chr21 24370890 24371202 -10536368 + AluY SINE Alu 1 311 0 1168 135 43 34 chr21 24371234 24371441 -10536129 + AluJo SINE Alu 89 297 -15 1674 168 3 7 chr21 24371441 24371732 -10535838 - MER47A DNA MER2_type -75 291 2 1320 232 129 39 chr21 24372127 24372315 -10535255 + L1MC4 LINE L1 7435 7605 -437 2408 70 0 0 chr21 24372315 24372613 -10534957 + AluY SINE Alu 1 298 -13 1320 232 129 39 chr21 24372613 24372959 -10534611 + L1MC4 LINE L1 7605 8017 -25 2127 99 10 0 chr21 24373187 24373481 -10534089 + AluSx SINE Alu 1 297 -15 22 56 0 0 chr21 24373697 24373733 -10533837 + AT_rich Low_complexity Low_complexity 1 36 0 1852 175 0 0 chr21 24373762 24374065 -10533505 + AluSx SINE Alu 1 303 -9 1918 123 10 13 chr21 24374337 24374638 -10532932 + AluSx SINE Alu 1 300 -12 1444 169 3 110 chr21 24374644 24374981 -10532589 + AluJb SINE Alu 1 301 -1 2113 120 0 0 chr21 24374986 24375286 -10532284 + AluSx SINE Alu 1 300 -12 1669 168 0 37 chr21 24375506 24375804 -10531766 - AluJb SINE Alu -25 287 1 2158 115 0 3 chr21 24375842 24376146 -10531424 + AluSx SINE Alu 1 303 -9 2173 102 0 3 chr21 24376751 24377055 -10530515 - AluSq SINE Alu -10 303 1 206 146 24 24 chr21 24377055 24377088 -10530482 + CT-rich Low_complexity Low_complexity 2 37 -5 2329 81 3 0 chr21 24377088 24377384 -10530186 - AluSp SINE Alu -16 297 1 429 176 37 2 chr21 24377510 24377658 -10529912 - MER5A DNA MER1_type -7 182 1 2169 114 0 9 chr21 24377804 24378119 -10529451 - AluSx SINE Alu 0 312 1 1594 151 9 72 chr21 24378370 24378688 -10528882 - AluJb SINE Alu -10 302 5 1985 100 3 17 chr21 24378702 24378991 -10528579 - AluSx SINE Alu -15 297 13 1565 168 0 33 chr21 24379222 24379526 -10528044 + AluJo SINE Alu 1 294 -18 1652 153 16 19 chr21 24379962 24380269 -10527301 + AluJo SINE Alu 1 306 -6 1680 171 9 22 chr21 24381000 24381316 -10526254 + AluJb SINE Alu 1 312 0 703 111 0 10 chr21 24381509 24381608 -10525962 + MER4A LTR ERV1 1 98 -566 1846 113 3 77 chr21 24381608 24381980 -10525590 + MER4A LTR ERV1 261 663 -1 1508 173 100 43 chr21 24382123 24382199 -10525371 - MSTD LTR MaLR 0 396 326 1574 195 20 24 chr21 24382199 24382497 -10525073 + AluJo SINE Alu 7 303 -9 1508 173 100 43 chr21 24382497 24382790 -10524780 - MSTD LTR MaLR -70 326 6 382 268 99 28 chr21 24382794 24382936 -10524634 - MIR SINE MIR -90 172 21 1172 145 0 32 chr21 24383173 24383359 -10524211 - AluSg/x SINE Alu 0 310 131 1248 99 0 0 chr21 24383427 24383588 -10523982 - AluSp SINE Alu -16 297 137 2419 99 0 3 chr21 24383958 24384270 -10523300 + AluSx SINE Alu 1 311 -1 2391 104 0 0 chr21 24384593 24384891 -10522679 - AluSx SINE Alu -14 298 1 205 123 88 18 chr21 24385262 24385319 -10522251 + T-rich Low_complexity Low_complexity 6 66 0 218 268 20 59 chr21 24386760 24386913 -10520657 + C-rich Low_complexity Low_complexity 3 149 0 22 35 0 0 chr21 24387263 24387292 -10520278 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr21 24387452 24387483 -10520087 + GC_rich Low_complexity Low_complexity 1 31 0 889 131 0 36 chr21 24388106 24388263 -10519307 - FLAM_C SINE Alu 0 133 1 303 246 131 16 chr21 24388544 24388666 -10518904 + MIR SINE MIR 43 178 -84 2373 94 3 3 chr21 24388688 24388995 -10518575 + AluSc SINE Alu 1 307 -2 2229 103 0 14 chr21 24389010 24389302 -10518268 + AluSq SINE Alu 1 288 -25 183 42 0 0 chr21 24389306 24389330 -10518240 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2393 99 3 0 chr21 24389334 24389638 -10517932 + AluSp SINE Alu 1 305 -8 198 0 0 0 chr21 24390296 24390318 -10517252 + (TAA)n Simple_repeat Simple_repeat 2 23 0 244 316 107 41 chr21 24390590 24390637 -10516933 - L2 LINE L2 -506 2808 2766 2366 108 0 0 chr21 24390637 24390942 -10516628 - AluSx SINE Alu -7 305 1 244 316 107 41 chr21 24390942 24391090 -10516480 - L2 LINE L2 -548 2766 2600 2120 121 23 13 chr21 24391295 24391601 -10515969 - AluSg SINE Alu -1 309 1 1442 218 48 33 chr21 24391616 24391678 -10515892 - L1MB7 LINE L1 -9 6175 6115 643 203 0 51 chr21 24391678 24391816 -10515754 - FLAM_A SINE Alu -1 132 2 1442 218 48 33 chr21 24391816 24392152 -10515418 - L1MB7 LINE L1 -69 6115 5771 864 241 126 23 chr21 24392163 24392366 -10515204 - MLT1A1 LTR MaLR 0 365 128 1887 161 28 0 chr21 24392366 24392651 -10514919 - AluJb SINE Alu -19 293 1 864 241 126 23 chr21 24392651 24392709 -10514861 - MLT1A1 LTR MaLR -237 128 77 1881 143 10 27 chr21 24392709 24393010 -10514560 - AluSx SINE Alu -16 296 1 2369 101 3 3 chr21 24393230 24393536 -10514034 + AluSg SINE Alu 2 307 -3 617 259 88 83 chr21 24393842 24394251 -10513319 - MLT1J LTR MaLR 0 511 101 979 174 0 23 chr21 24394331 24394503 -10513067 + AluJb SINE Alu 131 298 -14 201 212 35 24 chr21 24395095 24395180 -10512390 + (TTATA)n Simple_repeat Simple_repeat 2 87 0 281 244 78 35 chr21 24395224 24395339 -10512231 - L1ME4a LINE L1 -56 6065 5946 261 180 0 0 chr21 24395559 24395609 -10511961 + (TG)n Simple_repeat Simple_repeat 1 50 0 1916 95 5 168 chr21 24395668 24395883 -10511687 + MER1B DNA MER1_type 1 249 -2461 2381 87 7 3 chr21 24395883 24396181 -10511389 - AluSx SINE Alu -13 299 1 1916 95 5 168 chr21 24396181 24396316 -10511254 + MER1B DNA MER1_type 249 281 -2429 2372 77 0 13 chr21 24396316 24396614 -10510956 + AluY SINE Alu 1 294 -17 1916 95 5 168 chr21 24396614 24396662 -10510908 + MER1B DNA MER1_type 281 335 -2 2285 107 7 7 chr21 24397331 24397639 -10509931 - AluSx SINE Alu -4 308 1 3608 157 34 57 chr21 24397702 24398096 -10509474 - L1MB5 LINE L1 -8 6166 5765 2429 115 0 0 chr21 24398096 24398408 -10509162 - AluSx SINE Alu 0 312 1 3608 157 34 57 chr21 24398408 24398703 -10508867 - L1MB5 LINE L1 -409 5765 5493 1984 105 27 24 chr21 24398703 24398997 -10508573 - AluSx SINE Alu -17 295 1 3608 157 34 57 chr21 24398997 24399062 -10508508 - L1MB5 LINE L1 -681 5493 5428 31 26 0 0 chr21 24399062 24399100 -10508470 + AT_rich Low_complexity Low_complexity 1 38 0 631 123 0 0 chr21 24400372 24400478 -10507092 - L1MB5 LINE L1 -736 5442 5337 2252 105 0 3 chr21 24400480 24400774 -10506796 + AluSc SINE Alu 1 293 -16 34 0 0 0 chr21 24400774 24400808 -10506762 + AT_rich Low_complexity Low_complexity 1 34 0 1002 156 6 46 chr21 24400808 24400981 -10506589 + FRAM SINE Alu 1 161 -15 277 305 21 11 chr21 24401253 24401348 -10506222 - MIR SINE MIR -152 110 15 227 278 200 0 chr21 24401435 24401525 -10506045 - MIR SINE MIR -85 177 70 1870 215 54 7 chr21 24401526 24401967 -10505603 + MLT1C LTR MaLR 1 462 -5 446 238 132 32 chr21 24401997 24402186 -10505384 - L2 LINE L2 -54 3259 3052 1572 156 62 4 chr21 24402646 24402921 -10504649 + AluJb SINE Alu 3 293 -19 2179 107 0 3 chr21 24403001 24403290 -10504280 + AluSx SINE Alu 1 288 -24 2455 72 0 7 chr21 24403583 24403887 -10503683 - AluY SINE Alu -9 302 1 1966 117 0 32 chr21 24404370 24404653 -10502917 + AluSq SINE Alu 1 274 -39 22 0 0 0 chr21 24404653 24404675 -10502895 + AT_rich Low_complexity Low_complexity 1 22 0 1609 131 52 32 chr21 24404712 24404964 -10502606 - AluJb SINE Alu -55 257 1 1951 158 22 59 chr21 24405053 24405265 -10502305 - MLT1B LTR MaLR 0 390 172 2481 93 3 0 chr21 24405265 24405575 -10501995 - AluSq SINE Alu -2 311 1 1951 158 22 59 chr21 24405575 24405674 -10501896 - MLT1B LTR MaLR -218 172 95 2090 157 3 6 chr21 24405674 24405986 -10501584 + AluSx SINE Alu 1 311 -1 1951 158 22 59 chr21 24405986 24406078 -10501492 - MLT1B LTR MaLR -295 95 1 294 29 0 0 chr21 24406252 24406287 -10501283 + (TG)n Simple_repeat Simple_repeat 1 35 0 2173 103 31 10 chr21 24406986 24407277 -10500293 - AluSx SINE Alu -15 297 1 2375 157 53 19 chr21 24407662 24408076 -10499494 + MSTC LTR MaLR 1 428 0 597 164 88 70 chr21 24408200 24408371 -10499199 + MLT1B LTR MaLR 1 174 -216 1352 150 0 36 chr21 24408373 24408593 -10498977 + AluJb SINE Alu 1 212 -100 954 150 83 1 chr21 24408623 24408822 -10498748 + MLT1B LTR MaLR 157 390 0 293 218 68 53 chr21 24408963 24408982 -10498588 - L1MA9 LINE L1 0 6312 6294 1489 206 32 35 chr21 24408982 24409613 -10497957 - L1ME1 LINE L1 -24 6142 5397 230 311 102 17 chr21 24409668 24409845 -10497725 + L1ME LINE L1 5675 5866 -255 248 229 41 51 chr21 24409954 24410056 -10497514 - L1ME LINE L1 -357 5764 5664 2045 114 7 39 chr21 24410452 24410759 -10496811 + AluSx SINE Alu 2 298 -14 2256 106 0 17 chr21 24410763 24411064 -10496506 + AluSx SINE Alu 1 296 -16 429 302 53 57 chr21 24411276 24411444 -10496126 - MLT1J1 LTR MaLR 0 446 278 2463 84 0 0 chr21 24411444 24411743 -10495827 - AluSx SINE Alu -13 299 1 429 302 53 57 chr21 24411743 24411875 -10495695 - MLT1J1 LTR MaLR -168 278 147 1712 186 18 0 chr21 24412716 24413001 -10494569 + AluJo SINE Alu 1 290 -22 870 202 89 0 chr21 24413188 24413346 -10494224 - FAM SINE Alu -3 172 1 692 129 13 84 chr21 24413350 24413505 -10494065 - MER20 DNA MER1_type -75 144 1 2194 107 3 32 chr21 24414027 24414201 -10493369 - AluSx SINE Alu -11 301 138 2367 119 0 0 chr21 24414201 24414513 -10493057 - AluSx SINE Alu 0 312 1 2194 107 3 32 chr21 24414513 24414648 -10492922 - AluSx SINE Alu -174 138 1 2425 94 0 0 chr21 24416085 24416383 -10491187 + AluSx SINE Alu 1 298 -14 334 236 6 24 chr21 24416477 24416642 -10490928 + (TG)n Simple_repeat Simple_repeat 1 162 0 204 346 54 8 chr21 24416983 24417113 -10490457 - MIR3 SINE MIR -71 137 2 324 70 0 0 chr21 24417353 24417396 -10490174 + (TCCCC)n Simple_repeat Simple_repeat 2 44 0 2030 119 4 7 chr21 24417483 24417761 -10489809 - AluSq SINE Alu -36 277 1 2036 139 23 3 chr21 24417763 24418065 -10489505 - AluJo SINE Alu -4 308 1 395 70 0 0 chr21 24419131 24419188 -10488382 - L1MB2 LINE L1 -7 6164 6108 1946 98 87 0 chr21 24419617 24419883 -10487687 + AluSg SINE Alu 1 289 -21 2314 114 0 3 chr21 24419893 24420192 -10487378 + AluSg SINE Alu 1 298 -12 2178 109 0 26 chr21 24420200 24420502 -10487068 + AluSx SINE Alu 1 294 -18 2160 131 3 0 chr21 24420560 24420857 -10486713 - AluSx SINE Alu -10 302 5 183 100 0 0 chr21 24421420 24421450 -10486120 + (A)n Simple_repeat Simple_repeat 1 30 0 2415 91 3 0 chr21 24421668 24421964 -10485606 + AluSx SINE Alu 1 297 -15 849 116 58 0 chr21 24422038 24422176 -10485394 - L1MB3 LINE L1 -8 6175 6030 232 233 0 0 chr21 24422179 24422222 -10485348 - Alu SINE Alu -187 115 73 1934 171 7 0 chr21 24422241 24422533 -10485037 + AluJb SINE Alu 1 294 -18 1856 159 30 13 chr21 24422547 24422848 -10484722 - AluJb SINE Alu -6 306 1 2486 70 3 7 chr21 24422850 24423152 -10484418 - AluY SINE Alu -10 301 1 1205 219 66 22 chr21 24423301 24423621 -10483949 - MER39 LTR ERV1 -17 690 357 341 228 187 11 chr21 24424078 24424221 -10483349 - MIR SINE MIR -20 242 76 2361 107 0 0 chr21 24424652 24424951 -10482619 - AluSx SINE Alu -13 299 1 1732 159 0 81 chr21 24425088 24425224 -10482346 + AluJb SINE Alu 1 146 -166 2177 135 3 3 chr21 24425224 24425527 -10482043 + AluSx SINE Alu 2 304 -8 1732 159 0 81 chr21 24425527 24425710 -10481860 + AluJb SINE Alu 146 294 -18 376 161 37 0 chr21 24425921 24426002 -10481568 - MLT1I LTR MaLR -2 407 324 1395 192 17 52 chr21 24426791 24427078 -10480492 + AluJo SINE Alu 1 277 -35 2123 103 34 17 chr21 24427105 24427396 -10480174 - AluSg SINE Alu -14 296 1 306 247 62 0 chr21 24427650 24427731 -10479839 - L2 LINE L2 -21 3251 3166 2318 93 0 32 chr21 24427892 24428203 -10479367 + AluSx SINE Alu 1 301 -11 184 167 0 28 chr21 24428220 24428256 -10479314 + L2 LINE L2 3278 3312 -1 2376 108 0 0 chr21 24428312 24428617 -10478953 + AluY SINE Alu 1 305 -6 5483 52 8 0 chr21 24429603 24430274 -10477296 - L1PA5 LINE L1 -1 6153 5478 2427 68 14 0 chr21 24430726 24431018 -10476552 + AluY SINE Alu 1 296 -15 2355 112 0 0 chr21 24431507 24431812 -10475758 - AluSx SINE Alu -7 305 1 180 0 0 0 chr21 24431995 24432015 -10475555 + (TG)n Simple_repeat Simple_repeat 1 20 0 2311 112 0 6 chr21 24432067 24432378 -10475192 + AluSx SINE Alu 1 309 -3 1205 136 0 0 chr21 24433584 24433746 -10473824 + AluSg/x SINE Alu 133 294 -16 1111 192 23 23 chr21 24434219 24434438 -10473132 + MER20 DNA MER1_type 1 219 0 750 229 7 0 chr21 24434671 24434815 -10472755 - AluJo/FRAM SINE Alu -34 278 134 2455 83 7 0 chr21 24434817 24435118 -10472452 - AluSx SINE Alu -8 304 2 2236 126 3 0 chr21 24435543 24435852 -10471718 - AluSx SINE Alu -2 310 1 2264 88 3 17 chr21 24435892 24436187 -10471383 + AluSq SINE Alu 5 295 -18 1823 173 10 0 chr21 24436415 24436710 -10470860 + AluJb SINE Alu 1 298 -14 2383 106 0 0 chr21 24437337 24437649 -10469921 - AluSx SINE Alu 0 312 1 228 35 0 0 chr21 24437655 24437684 -10469886 + (T)n Simple_repeat Simple_repeat 1 29 0 2019 91 4 11 chr21 24439279 24439554 -10468016 - AluSx SINE Alu -5 307 35 1916 154 0 22 chr21 24440390 24440529 -10467041 + AluSx SINE Alu 1 142 -170 2265 117 0 0 chr21 24440529 24440827 -10466743 + AluSx SINE Alu 3 300 -12 1916 154 0 22 chr21 24440827 24440998 -10466572 + AluSx SINE Alu 142 304 -8 188 218 113 83 chr21 24441457 24441590 -10465980 - MIR3 SINE MIR -33 175 39 1953 151 21 0 chr21 24442949 24443240 -10464330 - AluSx SINE Alu -15 297 1 1016 88 0 0 chr21 24443673 24443798 -10463772 + AluSq/x SINE Alu 1 125 -188 1716 69 0 5 chr21 24443801 24444004 -10463566 - AluSx SINE Alu -110 202 1 1768 140 3 62 chr21 24444907 24445215 -10462355 + AluJb SINE Alu 1 290 -22 318 232 56 88 chr21 24445386 24445511 -10462059 + MIR3 SINE MIR 85 205 -3 258 32 0 0 chr21 24445555 24445586 -10461984 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 2138 113 0 14 chr21 24445587 24445869 -10461701 - AluSx SINE Alu -34 278 1 2367 85 3 0 chr21 24445897 24446190 -10461380 + AluSg SINE Alu 1 294 -16 2277 122 0 0 chr21 24446195 24446489 -10461081 + AluSx SINE Alu 1 294 -18 2226 127 7 0 chr21 24446661 24446960 -10460610 + AluSx SINE Alu 1 301 -11 468 266 16 75 chr21 24447157 24447345 -10460225 - MIR SINE MIR 0 262 86 2191 113 31 0 chr21 24448115 24448407 -10459163 + AluSx SINE Alu 1 301 -11 758 204 47 21 chr21 24448860 24449051 -10458519 + MIR SINE MIR 64 259 -3 286 248 106 19 chr21 24450137 24450298 -10457272 - L1ME4a LINE L1 0 6121 5947 1793 162 32 26 chr21 24450360 24450668 -10456902 - AluJb SINE Alu 0 312 3 1805 171 0 0 chr21 24450696 24450976 -10456594 - AluJo SINE Alu -32 280 1 2172 130 0 7 chr21 24451076 24451383 -10456187 + AluSx SINE Alu 1 305 -7 2115 135 3 6 chr21 24451430 24451741 -10455829 - AluSg SINE Alu 0 310 1 2035 146 3 0 chr21 24451743 24452037 -10455533 - AluSx SINE Alu -17 295 1 2223 110 7 23 chr21 24452162 24452470 -10455100 + AluSx SINE Alu 1 303 -9 1897 129 80 0 chr21 24452590 24452876 -10454694 - AluSg SINE Alu -1 309 1 1635 135 3 98 chr21 24454019 24454345 -10453225 - AluY SINE Alu -16 295 1 2111 141 0 3 chr21 24455097 24455396 -10452174 - AluSx SINE Alu -14 298 1 680 224 0 8 chr21 24455997 24456131 -10451439 + FLAM_A SINE Alu 1 133 0 2323 104 0 3 chr21 24456162 24456460 -10451110 - AluSq SINE Alu -12 301 5 1844 175 7 14 chr21 24456466 24456763 -10450807 - AluJb SINE Alu -17 295 1 2422 82 0 10 chr21 24456794 24457123 -10450447 + AluY SINE Alu 6 311 0 2347 72 0 0 chr21 24457131 24457410 -10450160 + AluY SINE Alu 1 279 -32 222 37 0 0 chr21 24457412 24457439 -10450131 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1732 167 14 7 chr21 24457917 24458046 -10449524 + AluJo SINE Alu 6 133 -179 2150 139 10 0 chr21 24458046 24458349 -10449221 + AluSx SINE Alu 1 306 -6 2342 87 0 0 chr21 24458350 24458693 -10448877 + AluY SINE Alu 1 343 0 1732 167 14 7 chr21 24458693 24458846 -10448724 + AluJo SINE Alu 132 294 -18 2226 179 39 22 chr21 24459042 24459500 -10448070 - MLT1C LTR MaLR 0 467 2 2368 96 0 3 chr21 24459527 24459828 -10447742 - AluSx SINE Alu -12 300 1 510 156 119 9 chr21 24459891 24460000 -10447570 - FLAM_C SINE Alu -21 122 2 1197 170 49 9 chr21 24461060 24461284 -10446286 - MER46A DNA MER2_type -2 234 2 2285 109 0 22 chr21 24461537 24461710 -10445860 - AluSx SINE Alu -6 306 142 2459 87 0 0 chr21 24461710 24462009 -10445561 - AluSc SINE Alu -10 299 1 2285 109 0 22 chr21 24462009 24462148 -10445422 - AluSx SINE Alu -170 142 1 1354 189 107 27 chr21 24462157 24462522 -10445048 - MLT1C LTR MaLR 0 467 74 2525 200 50 43 chr21 24463009 24463643 -10443927 - L1M4b LINE L1 -6198 661 23 2208 115 0 13 chr21 24463718 24464023 -10443547 - AluSx SINE Alu -11 301 1 2025 128 48 0 chr21 24464413 24464702 -10442868 - AluSx SINE Alu -9 303 1 1385 143 13 0 chr21 24464713 24464950 -10442620 - L1MA6 LINE L1 -5 6295 6056 1731 148 10 37 chr21 24465303 24465600 -10441970 + AluJb SINE Alu 1 289 -23 2300 106 0 28 chr21 24466631 24466951 -10440619 - AluSx SINE Alu -1 311 1 819 138 31 0 chr21 24467615 24467745 -10439825 + AluJo SINE Alu 1 134 -178 2362 109 3 0 chr21 24467751 24468062 -10439508 + AluSx SINE Alu 1 312 0 2296 102 0 0 chr21 24468686 24468981 -10438589 + AluSq SINE Alu 1 295 -18 208 213 98 16 chr21 24469306 24469367 -10438203 + MER5A DNA MER1_type 101 166 -23 505 197 26 26 chr21 24469357 24469474 -10438096 - MER5B DNA MER1_type -53 125 9 2256 91 0 0 chr21 24470063 24470338 -10437232 + AluSx SINE Alu 1 275 -37 192 40 0 0 chr21 24470345 24470370 -10437200 + (TAAA)n Simple_repeat Simple_repeat 4 28 0 450 40 0 80 chr21 24470721 24470796 -10436774 + LTR61 LTR ERV1 1 69 -526 1122 110 57 15 chr21 24470820 24470887 -10436683 + LTR61 LTR ERV1 46 109 -486 2321 100 0 0 chr21 24470887 24471187 -10436383 + AluY SINE Alu 10 309 -2 1122 110 57 15 chr21 24471187 24471349 -10436221 + LTR61 LTR ERV1 109 341 -254 1950 104 21 98 chr21 24471369 24471706 -10435864 - AluYb8 SINE Alu -7 311 1 351 0 0 0 chr21 24472017 24472056 -10435514 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1961 133 0 7 chr21 24472062 24472340 -10435230 - AluSx SINE Alu -36 276 1 950 146 0 7 chr21 24472341 24472478 -10435092 - AluSq/x SINE Alu -177 136 1 2353 119 0 0 chr21 24472835 24473145 -10434425 - AluSx SINE Alu -2 310 1 231 114 0 0 chr21 24473215 24473250 -10434320 + (T)n Simple_repeat Simple_repeat 1 35 0 1742 154 0 98 chr21 24473533 24473870 -10433700 - AluJo SINE Alu -8 304 1 2124 136 17 0 chr21 24473880 24474182 -10433388 - AluSx SINE Alu 0 312 6 2312 102 3 3 chr21 24474287 24474590 -10432980 - AluSq SINE Alu -10 303 1 486 0 0 0 chr21 24476709 24476763 -10430807 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 1885 117 29 11 chr21 24476763 24477044 -10430526 - AluSx SINE Alu -26 286 1 2342 112 0 6 chr21 24478688 24479002 -10428568 + AluSx SINE Alu 1 312 0 2069 131 0 3 chr21 24479010 24479301 -10428269 + AluJb SINE Alu 1 290 -22 232 281 135 0 chr21 24480146 24480242 -10427328 - L2 LINE L2 0 3272 3164 2239 124 0 3 chr21 24481272 24481586 -10425984 - AluSq SINE Alu 0 313 1 1737 144 91 0 chr21 24481789 24482053 -10425517 + AluJb SINE Alu 6 293 -19 1001 216 0 0 chr21 24482174 24482345 -10425225 + FRAM SINE Alu 1 168 -8 1818 86 9 0 chr21 24482440 24482662 -10424908 - AluSg SINE Alu -73 237 14 498 96 0 16 chr21 24483294 24483528 -10424042 + AluSq SINE Alu 1 307 -5 2237 200 65 39 chr21 24484129 24484789 -10422781 - MER67B LTR ERV1 0 661 1 1205 142 0 0 chr21 24484813 24484982 -10422588 - AluSg/x SINE Alu -10 300 132 195 69 0 0 chr21 24484984 24485013 -10422557 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1779 118 54 39 chr21 24485013 24485292 -10422278 - AluSg SINE Alu -27 283 1 1815 140 55 20 chr21 24485305 24485597 -10421973 - AluJb SINE Alu -10 302 1 237 89 0 111 chr21 24486040 24486085 -10421485 + Alu SINE Alu 130 169 -134 1658 133 4 0 chr21 24486085 24486318 -10421252 + AluJo SINE Alu 62 295 -17 993 196 8 85 chr21 24486359 24486619 -10420951 + L1MB3 LINE L1 5671 5910 -273 3659 158 55 59 chr21 24486644 24487404 -10420166 - MER21A LTR ERV1 -34 897 141 464 59 15 0 chr21 24487440 24487508 -10420062 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 858 52 0 88 chr21 24487531 24487724 -10419846 + (TAGG)n Simple_repeat Simple_repeat 4 179 0 782 55 0 101 chr21 24487749 24487948 -10419622 + (TAGG)n Simple_repeat Simple_repeat 1 179 0 204 91 61 0 chr21 24487948 24487981 -10419589 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1696 167 36 0 chr21 24488003 24488278 -10419292 + AluJb SINE Alu 11 295 -17 530 183 0 19 chr21 24488293 24488397 -10419173 - U13 snRNA snRNA -2 102 1 2474 48 35 0 chr21 24488838 24489128 -10418442 - AluY SINE Alu -9 302 3 2203 123 0 7 chr21 24489130 24489438 -10418132 - AluSx SINE Alu -6 306 1 912 139 15 0 chr21 24489908 24490045 -10417525 + AluSg/x SINE Alu 168 306 -4 417 215 0 0 chr21 24490071 24490164 -10417406 + GA-rich Low_complexity Low_complexity 1 93 0 2387 107 0 0 chr21 24490948 24491257 -10416313 + AluSx SINE Alu 1 309 -3 2057 130 0 13 chr21 24491490 24491791 -10415779 + AluSx SINE Alu 1 297 -15 260 248 27 50 chr21 24492200 24492293 -10415277 - MIR SINE MIR -113 95 4 2038 131 10 19 chr21 24492471 24492818 -10414752 + AluSx SINE Alu 1 344 0 2431 80 3 0 chr21 24492818 24493120 -10414450 + AluSq SINE Alu 1 303 -10 1798 162 36 0 chr21 24494006 24494283 -10413287 + AluJb SINE Alu 3 289 -23 2065 125 9 38 chr21 24494319 24494638 -10412932 - AluSx SINE Alu -2 310 1 404 176 98 10 chr21 24494739 24494841 -10412729 + L1MC4 LINE L1 7093 7203 -839 2427 97 0 0 chr21 24494979 24495288 -10412282 + AluSq SINE Alu 1 309 -4 3134 178 48 23 chr21 24495657 24496031 -10411539 - MER21B LTR ERV1 0 863 465 2404 91 10 0 chr21 24496031 24496339 -10411231 - AluSq SINE Alu -2 311 1 3134 178 48 23 chr21 24496339 24496606 -10410964 - MER21B LTR ERV1 -398 465 206 402 191 0 0 chr21 24497281 24497349 -10410221 + MER3 DNA MER1_type 45 112 -97 919 131 51 0 chr21 24497352 24497489 -10410081 + AluJo SINE Alu 86 229 -83 4590 59 13 17 chr21 24497529 24498566 -10409004 - MER11A LTR ERVK 0 1266 3 2089 105 0 0 chr21 24498566 24498833 -10408737 - AluSc SINE Alu -42 267 1 428 136 0 0 chr21 24498833 24498892 -10408678 + AluJo SINE Alu 222 280 -32 892 127 50 96 chr21 24498916 24499017 -10408553 + MER33 DNA MER1_type 53 157 -2428 2239 122 3 0 chr21 24499017 24499319 -10408251 - AluSq SINE Alu -9 304 2 892 127 50 96 chr21 24499319 24499394 -10408176 + MER33 DNA MER1_type 157 216 -2369 2120 117 3 30 chr21 24499394 24499694 -10407876 - AluSx SINE Alu -20 292 1 892 127 50 96 chr21 24499694 24499776 -10407794 + MER33 DNA MER1_type 216 300 -24 226 113 75 19 chr21 24500083 24500136 -10407434 + L1MA8 LINE L1 6124 6179 -112 2322 107 0 7 chr21 24500136 24500444 -10407126 + AluSg SINE Alu 1 306 -4 2345 101 3 0 chr21 24500497 24500804 -10406766 + AluSx SINE Alu 1 308 -4 374 165 13 0 chr21 24500891 24500970 -10406600 + L1MA9 LINE L1 6231 6310 -2 365 103 0 0 chr21 24501073 24501131 -10406439 - AluSq SINE Alu 0 300 243 1959 105 8 0 chr21 24501179 24501437 -10406133 - AluSq SINE Alu -53 260 1 456 127 0 0 chr21 24501716 24501787 -10405783 + AluS SINE Alu 1 71 -242 316 295 53 0 chr21 24501892 24501987 -10405583 - MER110 LTR ERV1 -391 100 1 853 221 58 90 chr21 24502071 24502233 -10405337 + AluSx SINE Alu 1 167 -135 2213 110 10 10 chr21 24502233 24502533 -10405037 + AluSx SINE Alu 1 300 -12 853 221 58 90 chr21 24502533 24502568 -10405002 + AluSx SINE Alu 167 202 -100 2546 66 3 0 chr21 24502568 24502873 -10404697 + AluSp SINE Alu 1 306 -7 853 221 58 90 chr21 24502873 24502986 -10404584 + AluSx SINE Alu 202 302 0 2252 108 0 7 chr21 24502990 24503287 -10404283 + AluSq SINE Alu 1 295 -18 226 333 89 19 chr21 24503303 24503516 -10404054 - L2 LINE L2 -144 3169 2942 802 294 145 50 chr21 24503577 24503659 -10403911 - L2 LINE L2 -458 2856 2783 2369 64 14 10 chr21 24503659 24503954 -10403616 + AluY SINE Alu 1 296 -15 802 294 145 50 chr21 24503954 24504354 -10403216 - L2 LINE L2 -531 2783 2328 444 289 94 21 chr21 24504659 24504698 -10402872 - L2 LINE L2 -1564 1750 1715 2357 112 0 0 chr21 24504698 24505010 -10402560 - AluSx SINE Alu 0 312 1 444 289 94 21 chr21 24505010 24505205 -10402365 - L2 LINE L2 -1599 1715 1499 1801 154 38 10 chr21 24505210 24505503 -10402067 + AluJb SINE Alu 1 301 -11 447 303 165 37 chr21 24505503 24506066 -10401504 - L2 LINE L2 -2001 1313 628 1916 183 0 0 chr21 24506114 24506414 -10401156 + AluJb SINE Alu 1 300 -12 2378 114 0 0 chr21 24506424 24506731 -10400839 + AluSx SINE Alu 1 307 -5 2280 83 3 3 chr21 24507157 24507446 -10400124 - AluSc SINE Alu -20 289 1 2164 105 43 20 chr21 24507502 24507807 -10399763 - AluSx SINE Alu 0 312 1 2166 122 0 3 chr21 24508451 24508746 -10398824 + AluSq SINE Alu 1 294 -19 1878 149 3 44 chr21 24508995 24509316 -10398254 + AluJb SINE Alu 1 308 -4 2466 82 3 0 chr21 24509737 24510040 -10397530 - AluSp SINE Alu -9 304 1 2464 70 3 0 chr21 24510587 24510885 -10396685 + AluY SINE Alu 1 299 -12 2011 138 37 0 chr21 24510890 24511186 -10396384 + AluJb SINE Alu 1 307 -5 1156 172 53 8 chr21 24511487 24511817 -10395753 - MSTD LTR MaLR 0 396 1 2127 130 10 0 chr21 24512004 24512304 -10395266 + AluSq SINE Alu 1 303 -10 1943 141 31 0 chr21 24512559 24512849 -10394721 + AluSx SINE Alu 1 299 -13 2217 113 3 7 chr21 24512939 24513248 -10394322 - AluSx SINE Alu -4 308 1 2336 121 0 6 chr21 24513802 24514115 -10393455 - AluSx SINE Alu -1 311 1 2586 81 0 0 chr21 24514124 24514434 -10393136 - AluSg SINE Alu 0 310 1 274 185 12 80 chr21 24514683 24514845 -10392725 + (TTATA)n Simple_repeat Simple_repeat 5 155 0 2324 99 0 20 chr21 24514921 24515225 -10392345 - AluSx SINE Alu -14 298 1 2152 99 20 17 chr21 24515596 24515889 -10391681 + AluSx SINE Alu 1 294 -18 626 241 12 0 chr21 24516046 24516208 -10391362 + L1MA8 LINE L1 5997 6160 -131 2165 113 0 3 chr21 24516221 24516505 -10391065 + AluSx SINE Alu 4 286 -26 315 0 0 0 chr21 24516505 24516540 -10391030 + (CA)n Simple_repeat Simple_repeat 2 36 0 2118 131 0 7 chr21 24516545 24516843 -10390727 + AluSx SINE Alu 1 296 -16 2477 94 0 0 chr21 24517442 24517750 -10389820 - AluSg SINE Alu -2 308 1 1163 187 178 12 chr21 24518276 24518517 -10389053 + AluSg SINE Alu 1 281 -19 23 33 0 0 chr21 24518540 24518570 -10389000 + AT_rich Low_complexity Low_complexity 1 30 0 459 0 0 0 chr21 24519290 24519341 -10388229 + (TG)n Simple_repeat Simple_repeat 1 51 0 2802 152 19 6 chr21 24519621 24520088 -10387482 + L1MC1 LINE L1 5857 6329 -4 1013 125 0 0 chr21 24520108 24520244 -10387326 + AluSq/x SINE Alu 1 136 -177 2182 104 0 20 chr21 24520244 24520382 -10387188 + AluSx SINE Alu 1 140 -172 2214 92 30 23 chr21 24520382 24520686 -10386884 + AluSp SINE Alu 1 306 -7 2182 104 0 20 chr21 24520686 24520845 -10386725 + AluSx SINE Alu 140 292 -20 2181 110 3 0 chr21 24520847 24521139 -10386431 + AluSg SINE Alu 1 293 -17 2285 89 7 7 chr21 24521144 24521437 -10386133 + AluSg1 SINE Alu 1 293 -16 1816 221 59 7 chr21 24521448 24521909 -10385661 + L1MB8 LINE L1 5686 6170 -8 1297 164 4 22 chr21 24522108 24522340 -10385230 - AluSg/x SINE Alu 0 310 83 847 131 16 0 chr21 24522340 24522462 -10385108 - AluSc SINE Alu -61 248 125 2258 126 0 16 chr21 24522462 24522779 -10384791 - AluSx SINE Alu 0 312 1 2115 107 4 0 chr21 24522814 24523086 -10384484 + AluSx SINE Alu 25 297 -15 2258 99 14 0 chr21 24523566 24523859 -10383711 + AluSx SINE Alu 1 297 -15 2516 64 3 0 chr21 24524311 24524607 -10382963 + AluSp SINE Alu 2 298 -15 194 0 39 0 chr21 24524664 24524690 -10382880 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr21 24524918 24524947 -10382623 + AT_rich Low_complexity Low_complexity 1 29 0 997 148 0 6 chr21 24525660 24525822 -10381748 - AluSg/x SINE Alu -18 292 132 1336 40 0 0 chr21 24525822 24525974 -10381596 - AluSg/x SINE Alu -3 307 156 446 235 188 13 chr21 24526081 24526230 -10381340 + MIR SINE MIR 1 175 -87 2252 113 0 0 chr21 24526414 24526714 -10380856 + AluSc SINE Alu 1 300 -9 1921 156 10 10 chr21 24526725 24527026 -10380544 + AluJb SINE Alu 1 301 -11 1685 152 20 37 chr21 24527048 24527244 -10380326 - AluJo SINE Alu -13 299 108 1723 126 112 35 chr21 24527244 24527592 -10379978 - THE1C LTR MaLR 0 375 1 1685 152 20 37 chr21 24527592 24527691 -10379879 - AluJo SINE Alu -204 108 9 2024 102 32 0 chr21 24528537 24528822 -10378748 + AluSg SINE Alu 1 294 -16 2044 129 3 0 chr21 24529767 24530070 -10377500 - AluSx SINE Alu -8 304 1 1635 132 61 44 chr21 24530075 24530234 -10377336 - AluJo SINE Alu -12 300 145 221 0 0 33 chr21 24530234 24530264 -10377306 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1949 121 7 0 chr21 24530264 24530545 -10377025 - AluSx SINE Alu -29 283 1 1635 132 61 44 chr21 24530545 24530679 -10376891 - AluJo SINE Alu -166 146 1 1730 140 44 4 chr21 24530981 24531281 -10376289 + AluSx SINE Alu 3 313 0 4609 29 45 28 chr21 24531364 24531644 -10375926 - LTR10C LTR ERV1 0 591 317 2099 77 0 7 chr21 24531644 24531918 -10375652 + AluY SINE Alu 1 272 -39 4609 29 45 28 chr21 24531918 24532218 -10375352 - LTR10C LTR ERV1 -274 317 1 1434 199 4 0 chr21 24532251 24532532 -10375038 + AluJo SINE Alu 18 299 -13 246 279 89 11 chr21 24532612 24532802 -10374768 + L1MC4a LINE L1 5254 5458 -2350 1226 227 24 48 chr21 24532819 24533016 -10374554 + L1MC4a LINE L1 5509 5696 -2112 1899 125 3 29 chr21 24533016 24533327 -10374243 + AluSx SINE Alu 1 303 -9 1226 227 24 48 chr21 24533327 24533460 -10374110 + L1MC4a LINE L1 5696 5831 -1977 2083 92 18 0 chr21 24533460 24533743 -10373827 - AluSx SINE Alu -10 302 15 742 82 10 0 chr21 24533860 24533958 -10373612 - AluSq/x SINE Alu -182 131 33 1734 144 0 14 chr21 24534004 24534360 -10373210 - AluJb SINE Alu 0 312 3 821 165 6 77 chr21 24534581 24534638 -10372932 - MLT1D LTR MaLR -9 496 437 2196 96 0 3 chr21 24534638 24534931 -10372639 + AluSg SINE Alu 3 294 -16 821 165 6 77 chr21 24534931 24535043 -10372527 - MLT1D LTR MaLR -68 437 339 1867 134 0 4 chr21 24535180 24535457 -10372113 + AluSx SINE Alu 13 288 -24 1053 147 34 0 chr21 24535460 24535637 -10371933 + AluSg/x SINE Alu 118 300 -10 688 156 35 35 chr21 24535638 24535779 -10371791 + LTR8 LTR ERV1 385 525 -166 607 119 0 0 chr21 24535791 24535875 -10371695 + AluSg/x SINE Alu 208 291 -18 4309 113 47 80 chr21 24535898 24536087 -10371483 - MER4E LTR ERV1 0 779 585 1432 109 194 0 chr21 24536087 24536334 -10371236 + AluSq SINE Alu 1 295 -18 4309 113 47 80 chr21 24536334 24536512 -10371058 - MER4E LTR ERV1 -194 585 403 2112 116 0 25 chr21 24536512 24536830 -10370740 + AluSx SINE Alu 1 310 -2 4309 113 47 80 chr21 24536830 24537248 -10370322 - MER4E LTR ERV1 -376 403 17 1955 105 49 3 chr21 24537248 24537534 -10370036 + AluSx SINE Alu 1 299 -13 4309 113 47 80 chr21 24537534 24537551 -10370019 - MER4E LTR ERV1 -762 17 1 850 142 57 21 chr21 24537560 24537701 -10369869 + LTR8 LTR ERV1 546 691 0 479 163 35 0 chr21 24537701 24537786 -10369784 - MLT1D LTR MaLR -415 90 3 1824 151 0 0 chr21 24537803 24538127 -10369443 + AluSx SINE Alu 5 328 0 1239 147 90 7 chr21 24538127 24538516 -10369054 + LTR54B LTR ERV1 12 494 -4 460 189 63 185 chr21 24538540 24538739 -10368831 - L1MC5 LINE L1 -1086 6875 6719 2085 98 0 3 chr21 24538739 24539060 -10368510 - AluSx SINE Alu 0 320 1 460 189 63 185 chr21 24539060 24539145 -10368425 - L1MC5 LINE L1 -1242 6719 6625 1398 176 0 43 chr21 24539151 24539181 -10368389 - AluJo SINE Alu -15 297 267 2398 47 0 3 chr21 24539181 24539482 -10368088 - AluY SINE Alu -11 300 1 1398 176 0 43 chr21 24539482 24539730 -10367840 - AluJo SINE Alu -45 267 31 1568 152 47 7 chr21 24539733 24539849 -10367721 + AluJb SINE Alu 5 115 -197 213 65 0 0 chr21 24539849 24539880 -10367690 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 1568 152 47 7 chr21 24539880 24540039 -10367531 + AluJb SINE Alu 115 291 -21 1705 135 57 7 chr21 24540289 24540570 -10367000 - AluSx SINE Alu -17 295 1 881 331 66 30 chr21 24540663 24541026 -10366544 - HAL1b LINE L1 -708 640 265 731 180 0 43 chr21 24541026 24541165 -10366405 - FLAM_C SINE Alu 0 133 1 2177 94 0 3 chr21 24541176 24541484 -10366086 - AluSg SINE Alu -3 307 1 1789 136 31 3 chr21 24541484 24541770 -10365800 - AluSx SINE Alu -13 299 5 2134 103 3 13 chr21 24541776 24542077 -10365493 - AluSp SINE Alu -15 298 1 369 45 0 0 chr21 24542093 24542137 -10365433 - AluSq/x SINE Alu -175 127 84 946 207 5 27 chr21 24542138 24542360 -10365210 - AluJo SINE Alu -95 217 1 1111 122 11 6 chr21 24542435 24542616 -10364954 - AluSg/x SINE Alu -4 306 125 2351 73 0 0 chr21 24542629 24542929 -10364641 - AluY SINE Alu -11 300 1 7057 55 14 0 chr21 24543189 24544705 -10362865 - L1PA7 LINE L1 0 6154 4630 13369 96 7 15 chr21 24544705 24547004 -10360566 - L1P3 LINE L1 -4166 2295 7 1285 132 209 39 chr21 24547096 24547354 -10360216 - AluJb SINE Alu 0 302 1 235 286 48 12 chr21 24547597 24547681 -10359889 + L2 LINE L2 2870 2956 -316 1626 163 35 14 chr21 24547767 24548056 -10359514 + AluJo SINE Alu 4 298 -14 2337 41 41 0 chr21 24548060 24548353 -10359217 + AluY SINE Alu 1 305 -6 1449 183 13 41 chr21 24548357 24548533 -10359037 - AluJb SINE Alu -4 308 143 2180 98 3 0 chr21 24548533 24548830 -10358740 - AluSp SINE Alu -15 298 1 1449 183 13 41 chr21 24548830 24548970 -10358600 - AluJb SINE Alu -169 143 1 1813 124 21 0 chr21 24548995 24549278 -10358292 - AluSx SINE Alu -23 289 1 2231 67 7 14 chr21 24549298 24549595 -10357975 - AluSp SINE Alu -18 295 1 254 248 0 30 chr21 24550207 24550308 -10357262 + G-rich Low_complexity Low_complexity 2 99 0 289 266 89 55 chr21 24551088 24551325 -10356245 - L1ME LINE L1 -660 5502 5258 195 100 0 0 chr21 24551398 24551428 -10356142 + (T)n Simple_repeat Simple_repeat 1 30 0 237 186 29 57 chr21 24551544 24551614 -10355956 + CT-rich Low_complexity Low_complexity 3 70 0 950 169 79 21 chr21 24551922 24552111 -10355459 + MER58 DNA MER1_type 1 200 -141 531 144 30 106 chr21 24552171 24552232 -10355338 + L1MC3 LINE L1 6085 6132 -1653 1946 138 3 0 chr21 24552232 24552537 -10355033 - AluSx SINE Alu -6 306 1 531 144 30 106 chr21 24552537 24552607 -10354963 + L1MC3 LINE L1 6132 6206 -1579 426 214 24 32 chr21 24552793 24552919 -10354651 - HAL1 LINE L1 -383 2124 2000 235 239 30 15 chr21 24553009 24553076 -10354494 - HAL1 LINE L1 -665 1842 1775 437 214 94 50 chr21 24553400 24553559 -10354011 - HAL1 LINE L1 -810 1697 1532 416 257 97 58 chr21 24553580 24553745 -10353825 - HAL1 LINE L1 -1160 1347 1190 2233 81 3 0 chr21 24553745 24554040 -10353530 - AluSp SINE Alu -17 296 1 416 257 97 58 chr21 24554040 24554144 -10353426 - HAL1 LINE L1 -1317 1190 1092 2374 57 0 10 chr21 24554144 24554442 -10353128 - AluY SINE Alu -16 295 1 416 257 97 58 chr21 24554442 24554572 -10352998 - HAL1 LINE L1 -1415 1092 969 2176 96 0 7 chr21 24554572 24554873 -10352697 - AluSq SINE Alu -13 300 2 416 257 97 58 chr21 24554873 24555022 -10352548 - HAL1 LINE L1 -1538 969 695 23 68 0 0 chr21 24555054 24555098 -10352472 + AT_rich Low_complexity Low_complexity 1 44 0 844 186 102 23 chr21 24555310 24555525 -10352045 - L1MB2 LINE L1 0 6171 5940 1171 184 164 16 chr21 24555525 24555769 -10351801 + Tigger7 DNA MER2_type 1 280 -2207 239 151 21 21 chr21 24555778 24555801 -10351769 + Tigger7 DNA MER2_type 2290 2312 -175 2167 85 24 0 chr21 24555801 24556094 -10351476 + AluSq SINE Alu 5 304 -9 239 151 21 21 chr21 24556094 24556107 -10351463 + Tigger7 DNA MER2_type 2312 2324 -163 1802 141 24 7 chr21 24556107 24556404 -10351166 + AluSx SINE Alu 1 302 -10 239 151 21 21 chr21 24556404 24556459 -10351111 + Tigger7 DNA MER2_type 2323 2382 -105 565 153 102 15 chr21 24556527 24556654 -10350916 - L1MB2 LINE L1 -242 5929 5815 2114 133 88 94 chr21 24556654 24556684 -10350886 - LTR54 LTR ERV1 0 510 481 2105 87 3 10 chr21 24556684 24556983 -10350587 - AluSx SINE Alu -15 297 1 2114 133 88 94 chr21 24556983 24557018 -10350552 - LTR54 LTR ERV1 -29 481 447 1818 117 57 10 chr21 24557018 24557317 -10350253 - AluSq SINE Alu 0 313 1 2114 133 88 94 chr21 24557317 24557740 -10349830 - LTR54 LTR ERV1 -63 447 22 2085 126 0 0 chr21 24557740 24558042 -10349528 - AluSx SINE Alu -10 302 1 2114 133 88 94 chr21 24558042 24558064 -10349506 - LTR54 LTR ERV1 -488 22 1 1735 121 37 30 chr21 24558208 24558506 -10349064 - AluSx SINE Alu -12 300 1 905 135 0 0 chr21 24558509 24558642 -10348928 - AluSq/x SINE Alu -180 133 1 553 39 73 101 chr21 24558662 24558795 -10348775 + MER30B DNA MER1_type 13 110 -80 837 125 0 88 chr21 24558799 24558876 -10348694 + MER30B DNA MER1_type 85 142 -88 2173 104 0 7 chr21 24558876 24559183 -10348387 + AluSx SINE Alu 1 305 -7 837 125 0 88 chr21 24559183 24559265 -10348305 + MER30B DNA MER1_type 142 230 0 3231 131 20 19 chr21 24559424 24559716 -10347854 + MER4E LTR ERV1 1 291 -475 2017 142 3 0 chr21 24559716 24560027 -10347543 - AluSq SINE Alu -1 312 1 3231 131 20 19 chr21 24560027 24560536 -10347034 + MER4E LTR ERV1 291 766 0 2311 80 0 13 chr21 24561182 24561493 -10346077 + AluY SINE Alu 1 307 -4 757 218 145 71 chr21 24561659 24561727 -10345843 - MER57A LTR ERV1 -2 401 339 1713 150 3 7 chr21 24561727 24562013 -10345557 + AluJo SINE Alu 5 289 -23 1942 137 0 3 chr21 24562018 24562311 -10345259 + AluSx SINE Alu 1 292 -20 757 218 145 71 chr21 24562311 24562642 -10344928 - MER57A LTR ERV1 -67 336 1 2334 67 3 3 chr21 24562652 24562952 -10344618 - AluY SINE Alu -11 300 1 1518 183 114 69 chr21 24563061 24563454 -10344116 - MER110 LTR ERV1 -29 462 52 2334 73 0 16 chr21 24563636 24563952 -10343618 - AluY SINE Alu 0 311 1 861 156 0 44 chr21 24563955 24564115 -10343455 + AluJb SINE Alu 121 273 -39 28 29 0 0 chr21 24564274 24564309 -10343261 + AT_rich Low_complexity Low_complexity 1 35 0 736 199 0 0 chr21 24564333 24564464 -10343106 - FLAM_A SINE Alu -2 131 1 1495 162 43 10 chr21 24564712 24565014 -10342556 + AluJb SINE Alu 1 312 0 2140 98 10 10 chr21 24565176 24565481 -10342089 - AluSx SINE Alu -7 305 1 2069 106 0 17 chr21 24565784 24566086 -10341484 - AluSq SINE Alu -6 307 11 2080 118 0 3 chr21 24566096 24566401 -10341169 - AluSx SINE Alu 0 312 9 319 231 18 0 chr21 24567425 24567492 -10340078 - MIR SINE MIR -102 106 38 189 0 0 0 chr21 24567531 24567552 -10340018 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 437 181 8 25 chr21 24568271 24568525 -10339045 + AluJo SINE Alu 1 295 -17 2146 96 3 0 chr21 24568993 24569284 -10338286 - AluSq SINE Alu -21 292 1 264 59 0 0 chr21 24569367 24569401 -10338169 + (A)n Simple_repeat Simple_repeat 1 34 0 2946 158 77 79 chr21 24569739 24569862 -10337708 - L1MD1 LINE L1 0 6242 6120 2345 67 0 0 chr21 24569862 24570160 -10337410 + AluY SINE Alu 1 298 -13 2946 158 77 79 chr21 24570160 24570488 -10337082 - L1MD1 LINE L1 -122 6120 5790 1955 137 3 6 chr21 24570488 24570802 -10336768 - AluSq SINE Alu 0 313 1 2946 158 77 79 chr21 24570802 24571117 -10336453 - L1MD1 LINE L1 -452 5790 5476 1761 123 0 58 chr21 24571813 24572123 -10335447 + AluSg SINE Alu 3 294 -16 1762 151 0 28 chr21 24572252 24572569 -10335001 - AluJb SINE Alu -4 308 1 2078 122 0 0 chr21 24572602 24572906 -10334664 + AluSq SINE Alu 1 304 -9 2098 110 7 0 chr21 24572959 24573259 -10334311 - AluSp SINE Alu -11 302 1 2115 127 0 0 chr21 24573304 24573612 -10333958 - AluSg SINE Alu -2 308 1 503 124 0 34 chr21 24573996 24574085 -10333485 - AluSg/x SINE Alu -18 291 206 306 87 0 0 chr21 24575062 24575108 -10332462 + (TCCCC)n Simple_repeat Simple_repeat 1 46 0 1777 136 13 26 chr21 24575108 24575279 -10332291 - AluSx SINE Alu -7 305 138 2039 124 0 3 chr21 24575279 24575585 -10331985 - AluSc SINE Alu -4 305 1 1777 136 13 26 chr21 24575585 24575722 -10331848 - AluSx SINE Alu -174 138 1 777 158 79 0 chr21 24575725 24575864 -10331706 - AluSc SINE Alu -18 291 142 1743 152 7 0 chr21 24575874 24576184 -10331386 - AluSx SINE Alu 0 312 1 1595 175 3 52 chr21 24576275 24576391 -10331179 + AluJo SINE Alu 1 121 -191 1577 199 3 7 chr21 24576391 24576673 -10330897 + AluJb SINE Alu 1 281 -31 181 0 0 0 chr21 24576673 24576693 -10330877 + (CAAA)n Simple_repeat Simple_repeat 1 180 0 1595 175 3 52 chr21 24576693 24576900 -10330670 + AluJo SINE Alu 121 309 -3 276 252 136 42 chr21 24577536 24577750 -10329820 - L2 LINE L2 -210 3062 2829 2345 97 0 10 chr21 24578263 24578573 -10328997 - AluSq SINE Alu -5 308 2 1929 136 26 19 chr21 24578743 24579052 -10328518 + AluSx SINE Alu 1 311 -1 23 33 0 0 chr21 24579499 24579529 -10328041 + AT_rich Low_complexity Low_complexity 1 30 0 1554 197 3 10 chr21 24579888 24580183 -10327387 + AluJb SINE Alu 1 293 -19 729 159 33 2 chr21 24580192 24580428 -10327142 + AluJ SINE Alu 10 302 -10 459 271 15 15 chr21 24580430 24580563 -10327007 + L1M4 LINE L1 3201 3333 -2813 2218 176 82 53 chr21 24580723 24580923 -10326647 - L1MA4 LINE L1 -15 6285 6092 2140 120 3 13 chr21 24580923 24581231 -10326339 - AluSc SINE Alu -4 305 1 2218 176 82 53 chr21 24581231 24581557 -10326013 - L1MA4 LINE L1 -208 6092 5744 1478 162 0 19 chr21 24581546 24581805 -10325765 + L1MA4 LINE L1 5490 5743 -561 1244 160 49 0 chr21 24582305 24582530 -10325040 - MER46A DNA MER2_type 0 236 1 671 177 115 0 chr21 24582558 24582688 -10324882 - Tigger2 DNA MER2_type -13 2705 2561 1022 172 0 6 chr21 24582688 24582857 -10324713 + AluJo SINE Alu 136 303 -9 315 110 171 0 chr21 24582860 24582942 -10324628 - Tigger2 DNA MER2_type -141 2577 2482 2414 92 0 0 chr21 24582942 24583246 -10324324 + AluSc SINE Alu 1 304 -5 306 109 22 0 chr21 24583269 24583315 -10324255 + AluSx SINE Alu 1 47 -255 258 111 0 0 chr21 24583309 24583345 -10324225 - tRNA-Glu-GAG tRNA tRNA -39 36 1 1881 134 0 44 chr21 24583350 24583445 -10324125 + AluSx SINE Alu 27 125 -187 2073 113 0 57 chr21 24583445 24583763 -10323807 - AluSx SINE Alu -12 300 1 1881 134 0 44 chr21 24583763 24583965 -10323605 + AluSx SINE Alu 125 311 -1 7417 128 62 27 chr21 24583965 24584177 -10323393 - Tigger2 DNA MER2_type -232 2486 2283 2130 97 66 0 chr21 24584177 24584466 -10323104 - AluSg SINE Alu 0 310 3 7417 128 62 27 chr21 24584466 24585533 -10322037 - Tigger2 DNA MER2_type -435 2283 1162 1076 141 11 43 chr21 24585533 24585717 -10321853 + AluJo SINE Alu 1 178 -134 2528 149 84 4 chr21 24585719 24586350 -10321220 - Tigger2 DNA MER2_type -2002 716 2 22 0 0 0 chr21 24587278 24587300 -10320270 + AT_rich Low_complexity Low_complexity 1 22 0 636 159 80 0 chr21 24587301 24587414 -10320156 - FLAM_C SINE Alu -10 123 2 2522 82 0 0 chr21 24587597 24587902 -10319668 - AluSx SINE Alu -3 309 5 2136 134 0 13 chr21 24587964 24588278 -10319292 + AluSp SINE Alu 1 310 -3 764 158 8 0 chr21 24588348 24588475 -10319095 + FLAM_C SINE Alu 10 137 -6 25 31 0 0 chr21 24588483 24588515 -10319055 + AT_rich Low_complexity Low_complexity 1 32 0 2376 99 0 0 chr21 24588541 24588844 -10318726 - AluY SINE Alu -8 303 1 754 165 8 0 chr21 24589178 24589299 -10318271 - FLAM_A SINE Alu -11 122 1 200 133 44 0 chr21 24589377 24589422 -10318148 + CT-rich Low_complexity Low_complexity 1 47 0 1385 153 44 4 chr21 24589422 24589651 -10317919 - AluJb SINE Alu -5 307 70 2137 94 0 0 chr21 24590688 24590953 -10316617 + AluSq SINE Alu 34 298 -15 2357 99 10 0 chr21 24591132 24591434 -10316136 + AluSx SINE Alu 6 310 -2 2193 98 32 0 chr21 24591470 24591755 -10315815 + AluSq SINE Alu 1 294 -19 833 132 0 76 chr21 24592111 24592136 -10315434 - FLAM_C SINE Alu -169 133 108 1966 132 3 7 chr21 24592136 24592424 -10315146 + AluSx SINE Alu 11 297 -15 833 132 0 76 chr21 24592424 24592542 -10315028 - FLAM_C SINE Alu -194 108 1 1793 147 73 45 chr21 24592942 24593010 -10314560 - MER47A DNA MER2_type -1958 365 300 1869 154 20 0 chr21 24593010 24593302 -10314268 + AluSx SINE Alu 8 305 -7 1793 147 73 45 chr21 24593302 24593588 -10313982 - MER47A DNA MER2_type -2023 300 1 518 190 52 0 chr21 24593659 24593775 -10313795 - MER58C DNA MER1_type -30 185 64 796 136 216 17 chr21 24594347 24594523 -10313047 + AluJb SINE Alu 83 293 -19 2565 70 0 0 chr21 24594637 24594936 -10312634 + AluSx SINE Alu 3 301 -11 2086 124 3 3 chr21 24595449 24595747 -10311823 - AluSq SINE Alu -15 298 1 2306 90 17 22 chr21 24595897 24596252 -10311318 - L1PA16 LINE L1 -8 6158 5806 1851 154 14 3 chr21 24596328 24596620 -10310950 - AluSx SINE Alu -17 295 1 309 263 26 0 chr21 24597066 24597142 -10310428 + HAL1 LINE L1 533 610 -1897 304 286 62 18 chr21 24597828 24597940 -10309630 + HAL1 LINE L1 1665 1781 -726 2072 135 0 3 chr21 24598459 24598756 -10308814 + AluSx SINE Alu 1 296 -16 1834 100 89 19 chr21 24599810 24600081 -10307489 + AluSx SINE Alu 1 290 -22 307 275 38 8 chr21 24600153 24600284 -10307286 + MER20B DNA MER1_type 4 138 -646 315 71 0 0 chr21 24600464 24600506 -10307064 + (TA)n Simple_repeat Simple_repeat 2 43 0 2247 118 3 13 chr21 24600519 24600834 -10306736 - AluSx SINE Alu 0 312 1 238 140 193 18 chr21 24600857 24600914 -10306656 - MLT1J LTR MaLR -354 157 91 1952 178 11 8 chr21 24601186 24601551 -10306019 - MER47A DNA MER2_type 0 366 1 2209 102 3 0 chr21 24601661 24601978 -10305592 - AluSp SINE Alu 0 318 1 2370 84 0 0 chr21 24602923 24603209 -10304361 + AluSx SINE Alu 1 286 -26 2205 116 3 0 chr21 24603209 24603502 -10304068 + AluSq SINE Alu 3 296 -17 2122 117 0 3 chr21 24603965 24604255 -10303315 - AluSx SINE Alu -22 290 2 290 197 0 16 chr21 24604259 24604320 -10303250 - MER103 DNA DNA -105 61 2 638 212 34 0 chr21 24604378 24604496 -10303074 + AluJo/FLAM SINE Alu 1 122 -180 513 171 0 0 chr21 24604496 24604584 -10302986 + AluY SINE Alu 118 205 -106 1436 155 16 4 chr21 24604584 24604835 -10302735 - AluJb SINE Alu -58 254 1 30 27 0 0 chr21 24606452 24606489 -10301081 + AT_rich Low_complexity Low_complexity 1 37 0 2447 69 3 0 chr21 24606699 24606990 -10300580 + AluSp SINE Alu 1 292 -21 630 296 12 6 chr21 24607700 24607872 -10299698 + MER5B DNA MER1_type 6 178 0 2288 92 0 0 chr21 24608279 24608561 -10299009 + AluSc SINE Alu 1 282 -27 314 306 76 32 chr21 24608604 24608761 -10298809 - L1MC/D LINE L1 -2150 5658 5495 2050 139 10 7 chr21 24609001 24609311 -10298259 - AluJb SINE Alu -1 311 1 2040 136 13 3 chr21 24609740 24610049 -10297521 - AluJb SINE Alu 0 312 1 576 162 0 20 chr21 24610344 24610443 -10297127 - AluJ/FLAM SINE Alu -215 97 1 1618 170 0 28 chr21 24610458 24610741 -10296829 - AluJb SINE Alu -24 288 14 427 235 162 0 chr21 24610813 24610949 -10296621 - L1MC5 LINE L1 -1154 6807 6650 1943 157 3 6 chr21 24610976 24611288 -10296282 - AluJo SINE Alu -1 311 1 229 266 80 64 chr21 24611498 24611550 -10296020 - L1M2 LINE L1 -402 5898 5847 1131 238 116 1 chr21 24611550 24611566 -10296004 - L1ME2 LINE L1 -311 5853 5840 2452 174 56 28 chr21 24611566 24612067 -10295503 - MLT2B2 LTR ERVL 0 515 1 1131 238 116 1 chr21 24612067 24612392 -10295178 - L1ME2 LINE L1 -324 5840 5467 1016 109 67 0 chr21 24612394 24612559 -10295011 - AluSg/x SINE Alu -1 309 134 234 0 0 0 chr21 24612560 24612586 -10294984 + (TTA)n Simple_repeat Simple_repeat 2 27 0 2135 108 3 3 chr21 24612586 24612872 -10294698 - AluSq SINE Alu -27 286 1 1945 140 7 29 chr21 24612953 24613261 -10294309 - AluSx SINE Alu -11 301 1 2558 62 0 0 chr21 24613508 24613812 -10293758 - AluY SINE Alu -6 305 2 21 0 0 0 chr21 24615027 24615048 -10292522 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr21 24615435 24615475 -10292095 + GC_rich Low_complexity Low_complexity 1 40 0 1461 148 102 0 chr21 24616206 24616462 -10291108 + AluJo SINE Alu 1 282 -30 2342 107 0 0 chr21 24616579 24616879 -10290691 - AluSx SINE Alu -12 300 1 1832 163 10 3 chr21 24617085 24617386 -10290184 - AluJb SINE Alu -9 303 1 2477 70 0 13 chr21 24617686 24617988 -10289582 - AluSq SINE Alu -15 298 1 2317 88 17 0 chr21 24618334 24618630 -10288940 - AluSq SINE Alu -10 303 3 2126 130 3 10 chr21 24619186 24619487 -10288083 + AluSx SINE Alu 1 299 -13 378 0 0 0 chr21 24619625 24619667 -10287903 + (TG)n Simple_repeat Simple_repeat 1 42 0 2494 90 3 0 chr21 24619917 24620227 -10287343 + AluSp SINE Alu 1 311 -2 689 197 15 71 chr21 24620414 24620534 -10287036 - MIR SINE MIR -2 260 154 1773 160 3 3 chr21 24620534 24620821 -10286749 - AluJo SINE Alu -25 287 1 689 197 15 71 chr21 24620821 24620898 -10286672 - MIR SINE MIR -108 154 74 270 43 255 21 chr21 24621204 24621251 -10286319 - AluYb8 SINE Alu -169 139 82 826 84 0 0 chr21 24621251 24621358 -10286212 + AluSg/x SINE Alu 202 308 -1 1147 137 34 94 chr21 24621605 24621786 -10285784 - AluJb SINE Alu -11 301 136 10309 67 40 5 chr21 24621786 24623120 -10284450 - SVA Other Other 0 1386 6 1147 137 34 94 chr21 24623120 24623172 -10284398 - AluJb SINE Alu -176 136 82 2558 68 0 7 chr21 24623312 24623619 -10283951 - AluSp SINE Alu -8 305 1 1818 173 3 7 chr21 24623763 24623930 -10283640 - AluSx SINE Alu -10 302 135 2264 87 3 23 chr21 24623930 24624240 -10283330 - AluSc SINE Alu -5 304 1 1818 173 3 7 chr21 24624240 24624373 -10283197 - AluSx SINE Alu -177 135 3 2378 107 3 0 chr21 24624596 24624896 -10282674 - AluSx SINE Alu -11 301 1 2164 113 20 0 chr21 24624911 24625213 -10282357 - AluSq SINE Alu -5 308 1 2072 128 3 0 chr21 24625869 24626165 -10281405 - AluSx SINE Alu -15 297 1 231 36 0 0 chr21 24626224 24626252 -10281318 + (A)n Simple_repeat Simple_repeat 1 28 0 1738 148 78 7 chr21 24626258 24626541 -10281029 + AluJb SINE Alu 2 304 -8 206 336 77 10 chr21 24627072 24627176 -10280394 + L2 LINE L2 3197 3307 -6 1961 132 20 26 chr21 24627585 24627889 -10279681 - AluSx SINE Alu -10 302 1 1904 160 0 4 chr21 24627921 24628202 -10279368 - AluJb SINE Alu -15 297 18 2204 134 0 10 chr21 24628211 24628525 -10279045 - AluSx SINE Alu -1 311 1 2430 74 7 3 chr21 24628902 24629201 -10278369 - AluSx SINE Alu -12 300 1 329 194 16 0 chr21 24629699 24629761 -10277809 - MER5B DNA MER1_type 0 178 116 2004 133 7 10 chr21 24629762 24630063 -10277507 + AluSx SINE Alu 1 300 -12 2108 135 30 0 chr21 24630063 24630367 -10277203 + AluSq SINE Alu 1 313 0 2165 111 3 0 chr21 24630853 24631142 -10276428 + AluSq SINE Alu 3 292 -21 449 113 70 12 chr21 24631148 24631568 -10276002 + (TA)n Simple_repeat Simple_repeat 1 444 0 2177 122 0 0 chr21 24631611 24631905 -10275665 - AluSx SINE Alu -17 295 2 920 145 55 7 chr21 24632036 24632181 -10275389 + FRAM SINE Alu 1 150 -26 25 0 0 0 chr21 24632587 24632612 -10274958 + AT_rich Low_complexity Low_complexity 1 25 0 711 219 24 35 chr21 24632822 24632991 -10274579 - MER5B DNA MER1_type -4 174 8 2212 126 7 3 chr21 24633041 24633350 -10274220 + AluSx SINE Alu 1 310 -2 2386 76 3 10 chr21 24633962 24634264 -10273306 - AluSg SINE Alu -10 300 1 2407 61 3 14 chr21 24634265 24634593 -10272977 - AluSp SINE Alu 0 313 7 2380 94 0 28 chr21 24634598 24634916 -10272654 - AluSx SINE Alu -3 309 1 620 353 66 33 chr21 24635034 24635287 -10272283 + L1ME LINE L1 4147 4418 -1728 1907 143 0 14 chr21 24635287 24635594 -10271976 - AluJo SINE Alu 0 305 3 620 353 66 33 chr21 24635594 24635704 -10271866 + L1ME LINE L1 4418 4523 -1623 292 310 10 35 chr21 24635803 24636000 -10271570 + L1ME LINE L1 4672 4863 -1283 2238 107 7 0 chr21 24636162 24636451 -10271119 - AluSq SINE Alu -22 291 1 995 157 56 0 chr21 24636454 24636670 -10270900 - L1MA8 LINE L1 0 6291 6064 2334 107 0 0 chr21 24636885 24637183 -10270387 + AluSx SINE Alu 1 298 -14 254 300 99 15 chr21 24637185 24637316 -10270254 + L1ME LINE L1 5681 5824 -297 2312 98 0 3 chr21 24637560 24637857 -10269713 + AluSx SINE Alu 1 296 -16 22 0 0 0 chr21 24637877 24637899 -10269671 + AT_rich Low_complexity Low_complexity 1 22 0 2268 103 0 0 chr21 24638730 24639020 -10268550 - AluSq SINE Alu -23 290 1 989 98 0 0 chr21 24639033 24639166 -10268404 - AluSq/x SINE Alu -180 133 1 39 38 0 0 chr21 24639452 24639505 -10268065 + AT_rich Low_complexity Low_complexity 1 53 0 1077 112 0 0 chr21 24639520 24639663 -10267907 - AluJb SINE Alu -169 143 1 2341 111 3 0 chr21 24639822 24640128 -10267442 - AluSx SINE Alu -5 307 1 722 271 67 36 chr21 24640146 24640536 -10267034 - L1MEc LINE L1 -5020 1376 969 1656 149 36 0 chr21 24640536 24640785 -10266785 - AluSx SINE Alu -13 299 42 722 271 67 36 chr21 24640785 24640844 -10266726 - L1MEc LINE L1 -5427 969 913 679 182 48 0 chr21 24640853 24640979 -10266591 - L1MEc LINE L1 -5522 874 743 2074 150 0 0 chr21 24640979 24641279 -10266291 - AluSx SINE Alu -12 300 1 2105 138 3 0 chr21 24641589 24641893 -10265677 - AluSx SINE Alu -7 305 1 2269 96 7 7 chr21 24642235 24642527 -10265043 - AluSx SINE Alu -20 292 1 1934 152 0 3 chr21 24644472 24644778 -10262792 - AluSx SINE Alu 0 305 1 940 209 75 5 chr21 24645491 24645611 -10261959 - MER20 DNA MER1_type -3 216 75 2370 97 0 3 chr21 24645611 24645919 -10261651 - AluSx SINE Alu -5 307 1 940 209 75 5 chr21 24645919 24645999 -10261571 - MER20 DNA MER1_type -144 75 2 1247 109 0 0 chr21 24646942 24647107 -10260463 - AluJb SINE Alu -17 295 131 227 200 0 17 chr21 24647134 24647194 -10260376 + (TA)n Simple_repeat Simple_repeat 1 59 0 2375 113 0 0 chr21 24647194 24647495 -10260075 - AluSx SINE Alu -11 301 1 958 124 0 7 chr21 24647495 24647632 -10259938 - AluJb SINE Alu -176 136 1 772 273 30 0 chr21 24647653 24647818 -10259752 - MER5B DNA MER1_type -2 176 7 2358 82 3 0 chr21 24647883 24648177 -10259393 - AluSg SINE Alu -15 295 1 2438 107 0 0 chr21 24648434 24648743 -10258827 + AluSx SINE Alu 3 311 -1 324 0 0 0 chr21 24650202 24650238 -10257332 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1366 160 49 38 chr21 24651080 24651343 -10256227 - AluJo SINE Alu -16 296 31 2316 84 30 0 chr21 24651345 24651641 -10255929 - AluSg SINE Alu -5 305 1 1416 202 42 3 chr21 24652706 24653067 -10254503 - LTR53 LTR ERVL -1 518 144 365 293 47 13 chr21 24653316 24653486 -10254084 + MIR3 SINE MIR 13 192 -62 2350 92 0 0 chr21 24653501 24653794 -10253776 - AluSg SINE Alu -17 293 1 995 244 32 22 chr21 24653883 24654183 -10253387 - MLT2D LTR ERVL -35 379 76 569 276 44 11 chr21 24654538 24654719 -10252851 + MIR SINE MIR 6 192 -70 805 148 127 21 chr21 24654953 24655095 -10252475 + FRAM SINE Alu 4 160 -6 2149 112 0 20 chr21 24655545 24655841 -10251729 + AluSx SINE Alu 13 302 -10 908 190 91 8 chr21 24655895 24656137 -10251433 - MLT1C LTR MaLR 0 467 206 2207 125 0 3 chr21 24656226 24656531 -10251039 - AluSx SINE Alu -8 304 1 2147 112 3 3 chr21 24656536 24656847 -10250723 + THE1B LTR MaLR 54 364 0 334 174 130 0 chr21 24656847 24656938 -10250632 - MLT1C LTR MaLR -358 109 7 374 276 86 0 chr21 24657236 24657352 -10250218 - MIR SINE MIR -130 132 7 695 148 0 0 chr21 24657522 24657630 -10249940 + FLAM_C SINE Alu 34 141 -2 2439 72 3 0 chr21 24657920 24658238 -10249332 - AluSx SINE Alu 0 321 3 2083 118 23 26 chr21 24658242 24658546 -10249024 - AluSx SINE Alu -9 303 1 379 216 74 61 chr21 24658626 24658774 -10248796 - L2 LINE L2 -292 2980 2831 285 353 50 25 chr21 24659248 24659449 -10248121 - L3 LINE CR1 -27 1550 1345 1818 147 4 4 chr21 24659449 24659722 -10247848 + AluJb SINE Alu 1 273 -39 1420 145 0 0 chr21 24660395 24660602 -10246968 - AluJb SINE Alu -12 300 94 1405 174 147 67 chr21 24660614 24660933 -10246637 + MLT1C LTR MaLR 1 364 -103 2111 136 0 3 chr21 24660933 24661234 -10246336 - AluSx SINE Alu -9 303 4 1405 174 147 67 chr21 24661234 24661344 -10246226 + MLT1C LTR MaLR 364 464 -3 867 222 66 33 chr21 24661346 24661461 -10246109 - L1M3 LINE L1 -575 5605 5495 2084 148 0 0 chr21 24661461 24661772 -10245798 - AluSx SINE Alu -1 311 1 867 222 66 33 chr21 24661772 24661899 -10245671 - L1M3 LINE L1 -685 5495 5355 2296 108 7 0 chr21 24661900 24662207 -10245363 - AluY SINE Alu -2 309 1 449 312 132 27 chr21 24662600 24663001 -10244569 + L2 LINE L2 2871 3313 0 210 71 0 0 chr21 24663307 24663335 -10244235 + (CCCA)n Simple_repeat Simple_repeat 3 30 0 2333 96 7 0 chr21 24663774 24664067 -10243503 - AluSg SINE Alu -15 295 1 189 291 101 13 chr21 24664113 24664192 -10243378 - MIR3 SINE MIR -6 202 117 2306 123 0 0 chr21 24664993 24665301 -10242269 + AluSx SINE Alu 1 308 -4 2156 90 0 75 chr21 24665597 24665919 -10241651 + AluSx SINE Alu 1 298 -14 2226 109 3 29 chr21 24665958 24666271 -10241299 + AluSx SINE Alu 1 305 -7 1441 125 14 14 chr21 24666406 24666622 -10240948 + AluSg/x SINE Alu 79 294 -16 267 257 0 0 chr21 24666744 24666818 -10240752 + (TA)n Simple_repeat Simple_repeat 1 74 0 726 284 135 15 chr21 24667130 24667450 -10240120 - L2 LINE L2 -805 2509 2144 2027 106 95 0 chr21 24667450 24667723 -10239847 + AluSq SINE Alu 1 299 -14 726 284 135 15 chr21 24667723 24667743 -10239827 - L2 LINE L2 -1170 2144 2128 485 259 55 16 chr21 24668051 24668260 -10239310 - L1MC/D LINE L1 -733 5567 5523 2504 84 0 0 chr21 24668397 24668706 -10238864 - AluSc SINE Alu 0 309 1 249 139 0 0 chr21 24668734 24668777 -10238793 + (TA)n Simple_repeat Simple_repeat 1 43 0 459 301 58 37 chr21 24668905 24669230 -10238340 - L1MC/D LINE L1 -1070 5076 4745 2399 97 3 0 chr21 24669744 24670043 -10237527 - AluSq SINE Alu -13 300 1 1499 100 0 0 chr21 24670211 24670401 -10237169 + AluSq SINE Alu 116 305 -8 3061 74 2 42 chr21 24670710 24671144 -10236426 - L1PA11 LINE L1 0 6174 5758 349 36 71 0 chr21 24671144 24671200 -10236370 + L1P LINE L1 5272 5331 -832 2043 128 4 0 chr21 24671200 24671502 -10236068 + AluSx SINE Alu 1 303 0 2273 123 0 0 chr21 24672009 24672116 -10235454 - AluSq SINE Alu -3 310 3 1485 129 0 0 chr21 24672116 24672317 -10235253 - AluSq SINE Alu -110 203 3 629 329 56 26 chr21 24672438 24672778 -10234792 - L1M4 LINE L1 -3124 3022 2673 2402 91 3 0 chr21 24672863 24673171 -10234399 - AluY SINE Alu -2 309 1 1981 68 114 14 chr21 24673535 24673815 -10233755 + AluSg SINE Alu 1 308 -2 2193 101 18 21 chr21 24674017 24674343 -10233227 - L1PA8A LINE L1 0 6131 5807 1162 183 0 5 chr21 24674428 24674625 -10232945 + AluJo SINE Alu 113 308 -4 180 0 0 0 chr21 24674852 24674872 -10232698 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 681 205 0 0 chr21 24674879 24674996 -10232574 - FLAM_C SINE Alu -16 117 1 430 273 38 0 chr21 24675048 24675180 -10232390 - L1MA10 LINE L1 -1 6333 6197 338 289 53 53 chr21 24675199 24675351 -10232219 + HAL1b LINE L1 114 265 -1083 928 202 0 0 chr21 24675465 24675628 -10231942 - AluJb SINE Alu -3 309 147 396 268 56 14 chr21 24675814 24675956 -10231614 + L1M4 LINE L1 4019 4166 -1980 515 237 46 0 chr21 24676523 24676654 -10230916 - L2 LINE L2 -261 3052 2916 432 63 0 0 chr21 24677402 24677465 -10230105 - L1MB5 LINE L1 0 6174 6112 1334 139 19 5 chr21 24677469 24677677 -10229893 + AluSg/x SINE Alu 92 302 -8 600 157 17 105 chr21 24677677 24677849 -10229721 - L1MB5 LINE L1 -50 6124 5968 1811 174 7 7 chr21 24677934 24678239 -10229331 + AluJb SINE Alu 1 305 -7 2227 87 0 21 chr21 24678244 24678533 -10229037 - AluSx SINE Alu -25 287 5 263 238 25 12 chr21 24678536 24678616 -10228954 + L1M3 LINE L1 5817 5897 -286 1304 193 42 23 chr21 24678546 24678899 -10228671 - L1MB5 LINE L1 -190 5974 5618 2122 125 3 3 chr21 24679196 24679491 -10228079 - AluSx SINE Alu -17 295 1 2042 112 3 11 chr21 24680115 24680429 -10227141 + AluSx SINE Alu 3 314 0 2549 51 3 3 chr21 24680758 24681054 -10226516 - AluY SINE Alu -15 296 1 455 286 69 84 chr21 24681070 24681170 -10226400 - HAL1 LINE L1 -1115 1392 1292 2523 88 0 0 chr21 24681170 24681475 -10226095 - AluSq SINE Alu -8 305 1 455 286 69 84 chr21 24681475 24681772 -10225798 - HAL1 LINE L1 -1215 1292 992 1637 101 0 0 chr21 24681772 24681979 -10225591 - AluSq SINE Alu -83 230 24 455 286 69 84 chr21 24681979 24682034 -10225536 - HAL1 LINE L1 -1515 992 938 1769 173 17 3 chr21 24682034 24682329 -10225241 - AluJo SINE Alu -13 299 1 455 286 69 84 chr21 24682329 24682528 -10225042 - HAL1 LINE L1 -1569 938 749 1267 181 20 109 chr21 24682655 24683003 -10224567 - AluYb8 SINE Alu -1 317 1 703 200 48 8 chr21 24683005 24683130 -10224440 - AluJo/FLAM SINE Alu -182 130 1 2342 95 7 0 chr21 24683238 24683533 -10224037 - AluSq SINE Alu -16 297 1 312 27 0 0 chr21 24684483 24684520 -10223050 + (CA)n Simple_repeat Simple_repeat 1 37 0 241 278 19 0 chr21 24685266 24685320 -10222250 + MIR SINE MIR 93 147 -61 1274 295 99 14 chr21 24685378 24685965 -10221605 + L2 LINE L2 1977 2613 -701 781 245 52 19 chr21 24687325 24687447 -10220123 + MIR SINE MIR 44 177 -85 1760 155 3 41 chr21 24687447 24687763 -10219807 + AluJo SINE Alu 7 310 -2 781 245 52 19 chr21 24687763 24687852 -10219718 + MIR SINE MIR 177 262 0 2099 134 0 0 chr21 24687939 24688229 -10219341 + AluSx SINE Alu 1 290 -22 2217 125 0 3 chr21 24688592 24688897 -10218673 + AluSx SINE Alu 1 304 -8 2265 119 3 0 chr21 24689811 24690114 -10217456 - AluSx SINE Alu -8 304 1 2334 70 40 7 chr21 24692504 24692806 -10214764 + AluSx SINE Alu 1 312 0 290 212 8 25 chr21 24692822 24692940 -10214630 + GA-rich Low_complexity Low_complexity 2 117 0 2048 112 4 4 chr21 24693290 24693567 -10214003 + AluSx SINE Alu 5 281 -31 227 31 31 0 chr21 24693570 24693602 -10213968 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 2142 114 140 31 chr21 24693842 24694228 -10213342 + MSTA LTR MaLR 1 428 0 473 210 10 0 chr21 24694864 24694964 -10212606 + MER81 DNA DNA 2 102 -12 413 276 46 46 chr21 24695676 24695850 -10211720 + L3 LINE CR1 741 914 -663 304 260 42 21 chr21 24695946 24696042 -10211528 + MER103 DNA DNA 62 159 -7 2605 93 13 19 chr21 24696142 24696519 -10211051 - THE1C LTR MaLR 0 375 1 2141 103 6 12 chr21 24696519 24696839 -10210731 - THE1C-int LTR MaLR 0 1580 1263 2129 117 48 0 chr21 24698151 24698441 -10209129 + AluSx SINE Alu 1 304 -8 2392 112 0 0 chr21 24698602 24698914 -10208656 - AluSx SINE Alu 0 312 1 224 30 30 0 chr21 24699877 24699910 -10207660 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2009 185 32 57 chr21 24700023 24700498 -10207072 + MLT1C LTR MaLR 5 467 0 1750 193 0 7 chr21 24700544 24700850 -10206720 + AluSx SINE Alu 1 304 -8 793 184 7 7 chr21 24700940 24701081 -10206489 + FLAM_C SINE Alu 2 142 -1 448 318 68 0 chr21 24701865 24702013 -10205557 - MIR SINE MIR -20 242 85 699 284 83 15 chr21 24702017 24702281 -10205289 - L2 LINE L2 -662 2652 2371 550 207 0 16 chr21 24702282 24702403 -10205167 + MLT2D LTR ERVL 1 119 -295 880 239 144 26 chr21 24702484 24702823 -10204747 - MLT1B LTR MaLR -11 379 1 254 263 26 13 chr21 24702907 24702983 -10204587 + MLT2C1 LTR ERVL 234 310 -104 1344 179 0 18 chr21 24703020 24703244 -10204326 - AluJo SINE Alu -92 220 1 661 134 0 79 chr21 24703246 24703373 -10204197 + MLT2C1 LTR ERVL 281 397 0 1331 274 98 34 chr21 24703378 24704001 -10203569 - L2 LINE L2 -938 2376 1714 1451 249 26 15 chr21 24704004 24704458 -10203112 + Charlie4a DNA MER1_type 28 486 -22 263 225 8 85 chr21 24704528 24704657 -10202913 - L2 LINE L2 -1580 1734 1616 400 337 31 5 chr21 24705000 24705196 -10202374 - L2 LINE L2 -2129 1185 985 557 187 55 77 chr21 24705226 24705408 -10202162 - MER5B DNA MER1_type 0 178 1 905 166 5 55 chr21 24705434 24705597 -10201973 - AluJo SINE Alu -39 273 120 216 0 0 0 chr21 24705597 24705621 -10201949 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 905 166 5 55 chr21 24705621 24705656 -10201914 - AluJo SINE Alu -192 120 85 1164 125 18 18 chr21 24705663 24705831 -10201739 - AluSx SINE Alu -144 168 1 2320 102 0 0 chr21 24706312 24706607 -10200963 - AluSg SINE Alu -15 295 1 1029 209 6 0 chr21 24706908 24707085 -10200485 - MER45A DNA AcHobo 0 178 1 954 63 0 0 chr21 24712181 24712307 -10195263 + (TGGA)n Simple_repeat Simple_repeat 4 129 0 788 269 40 9 chr21 24712743 24712970 -10194600 - MIR SINE MIR -21 241 8 1389 215 40 60 chr21 24714219 24714555 -10193015 - MLT1C LTR MaLR -1 466 140 2262 97 7 3 chr21 24714555 24714854 -10192716 - AluSp SINE Alu -13 300 1 1389 215 40 60 chr21 24714854 24714987 -10192583 - MLT1C LTR MaLR -327 140 6 2137 132 7 3 chr21 24715049 24715351 -10192219 - AluSx SINE Alu -9 303 1 2377 105 0 0 chr21 24716819 24717125 -10190445 - AluSg SINE Alu -4 306 1 1240 195 42 0 chr21 24717806 24718067 -10189503 + L1MB3 LINE L1 5651 5922 -261 456 19 0 0 chr21 24718067 24718120 -10189450 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 2429 76 0 0 chr21 24718124 24718412 -10189158 - AluSc SINE Alu -21 288 1 1418 169 22 4 chr21 24718412 24718679 -10188891 + L1MB3 LINE L1 5910 6181 -2 1968 119 67 14 chr21 24718689 24718974 -10188596 + AluSx SINE Alu 1 300 -12 234 0 0 0 chr21 24718974 24719000 -10188570 + (TA)n Simple_repeat Simple_repeat 2 27 0 410 113 0 14 chr21 24719001 24719072 -10188498 + (GA)n Simple_repeat Simple_repeat 1 70 0 1372 152 0 68 chr21 24720058 24720217 -10187353 - AluJo SINE Alu -24 288 152 2375 108 0 6 chr21 24720217 24720531 -10187039 - AluSx SINE Alu 0 312 1 1372 152 0 68 chr21 24720531 24720634 -10186936 - AluJo SINE Alu -160 152 44 390 154 0 0 chr21 24720771 24720849 -10186721 + (CA)n Simple_repeat Simple_repeat 1 78 0 281 258 93 0 chr21 24721761 24721858 -10185712 + MLT1D LTR MaLR 5 110 -395 2021 134 0 32 chr21 24721864 24721995 -10185575 + AluJb SINE Alu 1 135 -177 2973 9 0 0 chr21 24721995 24722311 -10185259 + AluYb8 SINE Alu 1 316 -2 2021 134 0 32 chr21 24722311 24722493 -10185077 + AluJb SINE Alu 135 304 -8 318 228 24 71 chr21 24722597 24722724 -10184846 + MLT1D LTR MaLR 268 388 -117 2152 185 5 3 chr21 24724328 24724717 -10182853 + MLT1B LTR MaLR 1 390 0 2298 111 0 3 chr21 24724888 24725194 -10182376 + AluSq SINE Alu 1 305 -8 1262 242 91 15 chr21 24725570 24725967 -10181603 + MLT1C LTR MaLR 41 467 0 2084 140 0 19 chr21 24725992 24726300 -10181270 + AluJb SINE Alu 2 303 -9 258 114 0 23 chr21 24726503 24726547 -10181023 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 1398 79 0 4 chr21 24726547 24727267 -10180303 + (GGGA)n Simple_repeat Simple_repeat 1 717 0 2281 102 3 3 chr21 24727847 24728141 -10179429 - AluSq SINE Alu -17 296 3 827 105 32 0 chr21 24729097 24729221 -10178349 - AluSg/x SINE Alu -13 297 170 428 223 20 74 chr21 24729383 24729531 -10178039 + MER5A DNA MER1_type 50 189 0 2091 130 0 23 chr21 24730267 24730574 -10176996 - AluSx SINE Alu -12 300 1 362 252 119 25 chr21 24730709 24730868 -10176702 - MIR SINE MIR -14 248 75 324 0 0 0 chr21 24731175 24731211 -10176359 + (T)n Simple_repeat Simple_repeat 1 36 0 273 322 82 20 chr21 24731981 24732127 -10175443 - MIR SINE MIR -56 206 52 670 266 17 17 chr21 24732709 24732882 -10174688 + MER5B DNA MER1_type 6 178 0 2244 125 0 0 chr21 24732900 24733196 -10174374 - AluSx SINE Alu -16 296 1 1999 127 97 30 chr21 24733197 24733536 -10174034 + THE1B LTR MaLR 3 364 0 360 236 138 0 chr21 24733775 24733898 -10173672 - MER104 DNA MER2_type -2 178 39 1707 170 0 4 chr21 24733899 24734158 -10173412 + AluJo SINE Alu 1 258 -54 769 293 44 23 chr21 24735783 24736157 -10171413 + L1MC4a LINE L1 5560 5950 -171 2207 139 0 0 chr21 24736157 24736466 -10171104 + AluSx SINE Alu 1 309 -3 769 293 44 23 chr21 24736466 24736552 -10171018 + L1MC4a LINE L1 5950 6033 -88 1921 157 3 23 chr21 24736679 24736979 -10170591 + AluJo SINE Alu 1 294 -18 2212 136 0 0 chr21 24737324 24737619 -10169951 + AluSx SINE Alu 1 295 -17 287 273 0 0 chr21 24737800 24737866 -10169704 + (CATATA)n Simple_repeat Simple_repeat 4 69 0 2122 103 7 4 chr21 24739430 24739737 -10167833 - AluSg SINE Alu 0 308 1 211 353 0 0 chr21 24742510 24742578 -10164992 + (TG)n Simple_repeat Simple_repeat 1 68 0 919 266 50 31 chr21 24742959 24743383 -10164187 + MLT1L LTR MaLR 157 588 -27 1745 141 3 87 chr21 24743665 24743998 -10163572 - AluJb SINE Alu -7 305 1 360 0 0 0 chr21 24744465 24744505 -10163065 + (TG)n Simple_repeat Simple_repeat 2 41 0 180 133 50 33 chr21 24744513 24744573 -10162997 + GA-rich Low_complexity Low_complexity 5 65 0 1753 195 18 21 chr21 24744848 24745233 -10162337 + L1MB3 LINE L1 5445 5828 -355 2321 110 0 0 chr21 24745233 24745532 -10162038 + AluSx SINE Alu 1 299 -13 2523 77 0 3 chr21 24745620 24745930 -10161640 - AluSx SINE Alu -3 309 1 1305 144 46 53 chr21 24746643 24746668 -10160902 + MER58B DNA MER1_type 60 84 -2336 204 40 0 0 chr21 24746668 24746693 -10160877 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2200 101 3 0 chr21 24746696 24746982 -10160588 - AluSx SINE Alu -25 287 1 1305 144 46 53 chr21 24746982 24747236 -10160334 + MER58B DNA MER1_type 86 341 0 279 350 43 12 chr21 24747349 24747512 -10160058 + MER20B DNA MER1_type 1 168 -616 1486 243 33 8 chr21 24747554 24747910 -10159660 + MLT2D LTR ERVL 6 375 -39 315 71 0 0 chr21 24747910 24747952 -10159618 + (CA)n Simple_repeat Simple_repeat 2 43 0 1486 243 33 8 chr21 24747952 24747994 -10159576 + MLT2D LTR ERVL 375 414 0 2125 117 7 3 chr21 24748161 24748474 -10159096 + AluSx SINE Alu 1 312 0 693 86 65 0 chr21 24749176 24749269 -10158301 + AluSq/x SINE Alu 35 133 -180 2162 109 7 13 chr21 24749272 24749597 -10157973 + AluSx SINE Alu 1 312 0 1521 222 46 30 chr21 24749781 24750166 -10157404 - MLT1C LTR MaLR 0 467 72 2428 99 33 30 chr21 24750166 24750529 -10157041 + THE1B LTR MaLR 1 364 0 1521 222 46 30 chr21 24750529 24750603 -10156967 - MLT1C LTR MaLR -395 72 1 2017 138 0 3 chr21 24753307 24753686 -10153884 + AluSx SINE Alu 1 378 0 1840 143 3 26 chr21 24753957 24754264 -10153306 - AluJb SINE Alu -12 300 1 1137 199 0 5 chr21 24755976 24756187 -10151383 - MER58A DNA MER1_type 0 224 15 278 319 76 57 chr21 24756187 24756344 -10151226 - MIR3 SINE MIR -48 160 1 455 287 28 0 chr21 24758062 24758205 -10149365 - MIR SINE MIR 0 262 116 1965 106 46 14 chr21 24759135 24759419 -10148151 - AluSq SINE Alu -20 293 1 231 179 0 0 chr21 24760293 24760332 -10147238 - L2 LINE L2 -10 3262 3224 2013 109 18 4 chr21 24760802 24761078 -10146492 + AluSx SINE Alu 12 291 -21 1875 117 81 0 chr21 24761134 24761407 -10146163 - AluSx SINE Alu -17 295 1 225 217 165 43 chr21 24761982 24762097 -10145473 + MIR3 SINE MIR 6 134 -74 30 27 0 0 chr21 24762215 24762252 -10145318 + AT_rich Low_complexity Low_complexity 1 37 0 1593 37 0 0 chr21 24762261 24762449 -10145121 + L1PA4 LINE L1 5965 6152 -3 2815 89 11 0 chr21 24763468 24763850 -10143720 + L1PA13 LINE L1 5774 6159 -4 1247 49 0 0 chr21 24763944 24764086 -10143484 - AluSp/q SINE Alu -13 300 159 2105 128 10 16 chr21 24764951 24765264 -10142306 + AluSx SINE Alu 1 311 -1 2347 101 3 3 chr21 24766751 24767059 -10140511 + AluSp SINE Alu 1 308 -5 329 276 44 91 chr21 24767098 24767480 -10140090 + L1MC4 LINE L1 7512 7911 -131 2317 123 0 0 chr21 24767480 24767790 -10139780 - AluSg SINE Alu 0 310 1 329 276 44 91 chr21 24767790 24767832 -10139738 + L1MC4 LINE L1 7911 7953 -89 243 0 0 0 chr21 24767832 24767859 -10139711 + (TG)n Simple_repeat Simple_repeat 2 28 0 329 276 44 91 chr21 24767859 24767981 -10139589 + L1MC4 LINE L1 7953 8033 -9 1909 110 0 0 chr21 24768231 24768485 -10139085 + AluSc SINE Alu 56 309 0 510 245 52 52 chr21 24768980 24769172 -10138398 - L2 LINE L2 0 3313 3122 288 159 53 14 chr21 24769172 24769540 -10138030 + (TG)n Simple_repeat Simple_repeat 1 382 0 385 239 22 28 chr21 24769555 24769735 -10137835 + (TG)n Simple_repeat Simple_repeat 1 179 0 446 99 70 23 chr21 24769809 24769980 -10137590 + (TG)n Simple_repeat Simple_repeat 2 180 0 1250 164 14 0 chr21 24769985 24770193 -10137377 + MER2 DNA MER2_type 1 211 -133 425 299 38 33 chr21 24770548 24770759 -10136811 - L2 LINE L2 -459 2855 2644 201 133 0 0 chr21 24771750 24771780 -10135790 + (TG)n Simple_repeat Simple_repeat 1 30 0 1999 96 0 26 chr21 24771803 24772105 -10135465 - AluSg SINE Alu -16 294 1 507 195 92 70 chr21 24773073 24773258 -10134312 - L2 LINE L2 -1 3312 3124 557 333 82 9 chr21 24773380 24773611 -10133959 - MIR SINE MIR -10 252 5 1027 177 14 64 chr21 24776695 24776915 -10130655 + MER20 DNA MER1_type 1 209 -10 233 249 22 127 chr21 24778685 24778866 -10128704 + L2 LINE L2 3022 3183 -89 189 0 0 0 chr21 24779119 24779140 -10128430 + (TC)n Simple_repeat Simple_repeat 1 21 0 446 304 64 48 chr21 24779598 24779911 -10127659 + L2 LINE L2 2995 3312 -1 1366 199 181 25 chr21 24780680 24781078 -10126492 + MLT1C LTR MaLR 8 467 0 290 25 0 25 chr21 24782516 24782556 -10125014 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 398 176 27 0 chr21 24783681 24783755 -10123815 + LTR47A LTR ERVL 1 76 -376 1324 162 17 8 chr21 24783816 24784057 -10123513 + LTR47B LTR ERVL 201 443 0 637 228 7 35 chr21 24784360 24784505 -10123065 - MIR SINE MIR -66 196 56 196 303 15 0 chr21 24784885 24784951 -10122619 + L2 LINE L2 3206 3272 0 441 84 0 0 chr21 24785649 24785720 -10121850 + (TG)n Simple_repeat Simple_repeat 1 71 0 297 361 58 19 chr21 24786295 24786500 -10121070 + MIR SINE MIR 20 232 -30 5019 161 22 14 chr21 24786636 24788365 -10119205 - L1MB1 LINE L1 -8 6160 4416 395 109 16 0 chr21 24788375 24788439 -10119131 - MER41B LTR ERV1 -90 545 481 1103 148 31 39 chr21 24788441 24788698 -10118872 - L1MB1 LINE L1 -1723 4423 4169 1220 171 28 73 chr21 24788824 24789015 -10118555 - L1MB1 LINE L1 -1994 4152 3954 351 0 0 0 chr21 24789015 24789054 -10118516 + (TTTTA)n Simple_repeat Simple_repeat 2 40 0 2049 85 19 0 chr21 24789058 24789329 -10118241 - AluSq SINE Alu -27 286 11 1220 171 28 73 chr21 24789329 24789456 -10118114 - L1MB1 LINE L1 -2195 3951 3834 232 79 0 0 chr21 24790066 24790104 -10117466 - Alu SINE Alu -6 297 260 420 247 7 72 chr21 24790319 24790458 -10117112 - L1 LINE L1 -2234 3912 3783 23 0 0 0 chr21 24792453 24792476 -10115094 + AT_rich Low_complexity Low_complexity 1 23 0 1875 185 75 47 chr21 24794460 24794951 -10112619 + MLT1D LTR MaLR 1 505 0 414 228 0 0 chr21 24795389 24795468 -10112102 + MER63A DNA MER1_type 93 171 -39 306 256 0 26 chr21 24796080 24796158 -10111412 + MIR SINE MIR 145 220 -42 413 316 162 22 chr21 24797721 24797999 -10109571 - L2 LINE L2 -5 3267 2951 998 176 0 0 chr21 24798421 24798586 -10108984 + FRAM SINE Alu 1 165 -1 2111 106 0 0 chr21 24798989 24799272 -10108298 + AluSg SINE Alu 12 294 -16 239 309 51 42 chr21 24799334 24799726 -10107844 + L1MC5 LINE L1 7098 7447 -595 4090 113 3 33 chr21 24799726 24800355 -10107215 - MER4B LTR ERV1 0 610 1 239 309 51 42 chr21 24800355 24800404 -10107166 + L1MC5 LINE L1 7447 7494 -548 2224 80 0 0 chr21 24800696 24800982 -10106588 - AluSg SINE Alu -24 286 1 412 317 57 0 chr21 24802525 24802648 -10104922 + MIR SINE MIR 15 144 -118 2452 60 0 0 chr21 24802862 24803162 -10104408 + AluY SINE Alu 1 300 -11 2192 252 37 7 chr21 24803495 24804177 -10103393 + L1ME3 LINE L1 4222 4923 -1223 1027 254 35 32 chr21 24804188 24804562 -10103008 + L1ME3 LINE L1 5784 6158 -4 803 269 60 20 chr21 24805127 24805376 -10102194 - MIR SINE MIR 0 262 4 209 219 0 0 chr21 24806080 24806121 -10101449 + CT-rich Low_complexity Low_complexity 2 42 0 2061 114 7 3 chr21 24806987 24807294 -10100276 + AluSx SINE Alu 5 312 0 220 226 11 108 chr21 24807639 24807732 -10099838 - L2 LINE L2 0 3272 3189 273 300 12 12 chr21 24807794 24807874 -10099696 + MIR SINE MIR 48 127 -81 685 205 80 117 chr21 24807957 24808308 -10099262 + MLT1H LTR MaLR 9 346 -203 214 200 60 0 chr21 24808453 24808503 -10099067 - MIR SINE MIR -1 261 209 23 0 0 0 chr21 24808585 24808608 -10098962 + AT_rich Low_complexity Low_complexity 1 23 0 2283 156 21 8 chr21 24808771 24809150 -10098420 - MLT1B LTR MaLR 0 390 7 1451 178 26 8 chr21 24810084 24810348 -10097222 + L1M3 LINE L1 5446 5714 -469 331 128 0 0 chr21 24810348 24810395 -10097175 + MLT2D LTR ERVL 368 414 0 1517 178 40 7 chr21 24811274 24811572 -10095998 + AluJo SINE Alu 1 308 -4 1343 210 51 36 chr21 24812967 24813301 -10094269 - MLT1C LTR MaLR -118 349 11 247 33 16 66 chr21 24813805 24813866 -10093704 + (CACCC)n Simple_repeat Simple_repeat 4 61 0 2193 115 0 0 chr21 24813987 24814292 -10093278 + AluSx SINE Alu 1 305 -7 1401 167 69 130 chr21 24815133 24815594 -10091976 + MER63B DNA MER1_type 1 433 -3 543 31 0 0 chr21 24815705 24815770 -10091800 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 2118 97 19 3 chr21 24815775 24816083 -10091487 - AluSq SINE Alu 0 313 1 262 182 18 18 chr21 24816092 24816147 -10091423 - MER5B DNA MER1_type -123 55 1 567 144 10 58 chr21 24816418 24816522 -10091048 - FLAM_A SINE Alu -26 116 18 715 197 0 0 chr21 24816820 24816937 -10090633 + FLAM_A SINE Alu 1 117 -16 2086 85 7 0 chr21 24817969 24818252 -10089318 - AluSp SINE Alu -2 311 27 2212 99 0 3 chr21 24818267 24818571 -10088999 + AluSx SINE Alu 1 303 -9 262 338 69 21 chr21 24818857 24819002 -10088568 + MIR SINE MIR 60 211 -51 555 149 11 0 chr21 24819134 24819228 -10088342 - MER53 DNA DNA 0 189 95 804 253 183 7 chr21 24819379 24819668 -10087902 + MER20B DNA MER1_type 1 340 -444 350 209 22 82 chr21 24819775 24819909 -10087661 + MER20B DNA MER1_type 528 653 -131 354 250 12 0 chr21 24820049 24820133 -10087437 + L1MD2 LINE L1 6061 6145 -214 2031 129 6 3 chr21 24820286 24820597 -10086973 - AluSx SINE Alu 0 312 1 2174 132 9 0 chr21 24820608 24820949 -10086621 - L1PA13 LINE L1 -2 6161 5818 347 207 25 8 chr21 24822156 24822277 -10085293 + CT-rich Low_complexity Low_complexity 1 123 0 250 269 15 0 chr21 24822751 24822818 -10084752 + MLT1I LTR MaLR 334 401 -8 2148 168 74 2 chr21 24823353 24823746 -10083824 + MLT2C2 LTR ERVL 3 423 -41 207 0 0 0 chr21 24823760 24823783 -10083787 + (TTCCC)n Simple_repeat Simple_repeat 1 23 0 1658 124 30 124 chr21 24823784 24824165 -10083405 - AluSx SINE Alu 0 351 2 183 220 0 0 chr21 24824356 24824406 -10083164 + GA-rich Low_complexity Low_complexity 2 51 0 2065 81 0 65 chr21 24824810 24825119 -10082451 - AluY SINE Alu -22 289 1 363 180 101 0 chr21 24826881 24826970 -10080600 + MIR3 SINE MIR 104 201 -7 237 196 0 0 chr21 24827410 24827461 -10080109 + GA-rich Low_complexity Low_complexity 2 52 0 2394 66 0 3 chr21 24827748 24828049 -10079521 - AluY SINE Alu -11 300 1 1042 305 77 35 chr21 24828138 24828268 -10079302 + HAL1 LINE L1 920 1043 -1464 2041 111 3 7 chr21 24828268 24828565 -10079005 - AluSq SINE Alu -17 296 1 1042 305 77 35 chr21 24828565 24829107 -10078463 + HAL1 LINE L1 1043 1637 -870 2827 226 62 2 chr21 24829107 24829723 -10077847 + MER82 DNA MER2_type 1 653 0 1042 305 77 35 chr21 24829723 24829899 -10077671 + HAL1 LINE L1 1637 1804 -703 1762 181 3 0 chr21 24829953 24830251 -10077319 - AluJo SINE Alu -13 299 1 939 237 58 5 chr21 24830287 24830494 -10077076 + MIR SINE MIR 19 236 -26 746 239 18 0 chr21 24831265 24831428 -10076142 - MER58B DNA MER1_type 0 341 176 730 146 57 0 chr21 24831435 24831558 -10076012 + L1PB2 LINE L1 5960 6089 -62 254 119 0 85 chr21 24831597 24831656 -10075914 + L1PB3 LINE L1 6094 6147 -7 689 184 32 0 chr21 24831864 24831989 -10075581 + FLAM_C SINE Alu 3 131 -12 2048 109 0 0 chr21 24832120 24832404 -10075166 + AluSg SINE Alu 16 299 -11 987 132 12 30 chr21 24833388 24833554 -10074016 - AluJ SINE Alu -18 294 132 225 0 0 0 chr21 24833554 24833579 -10073991 + (TG)n Simple_repeat Simple_repeat 2 26 0 326 308 36 34 chr21 24833588 24833712 -10073858 + L1MC4 LINE L1 6588 6719 -1323 707 156 0 92 chr21 24833736 24833877 -10073693 - AluJ SINE Alu -172 130 3 30 27 0 0 chr21 24833917 24833954 -10073616 + AT_rich Low_complexity Low_complexity 1 37 0 208 306 74 0 chr21 24835158 24835266 -10072304 + L2 LINE L2 3122 3237 -35 1179 164 45 0 chr21 24837416 24837617 -10069953 + MER20 DNA MER1_type 4 213 -6 540 238 106 62 chr21 24838443 24838670 -10068900 - MLT1L LTR MaLR -8 607 371 375 253 136 19 chr21 24838802 24838956 -10068614 - MLT1L LTR MaLR -328 287 116 614 247 33 0 chr21 24839375 24839525 -10068045 + MIR SINE MIR 108 262 0 854 220 195 60 chr21 24839533 24839851 -10067719 + MLT1G LTR MaLR 1 361 -229 469 250 46 46 chr21 24839893 24840045 -10067525 + MLT1G LTR MaLR 444 595 0 210 128 0 0 chr21 24840061 24840100 -10067470 + (TTA)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr21 24840352 24840375 -10067195 + AT_rich Low_complexity Low_complexity 1 23 0 264 30 0 0 chr21 24842296 24842329 -10065241 + (TTATA)n Simple_repeat Simple_repeat 2 34 0 1681 205 21 50 chr21 24843565 24843676 -10063894 - MLT1A1 LTR MaLR 0 365 252 1690 171 13 26 chr21 24843676 24843981 -10063589 + AluJb SINE Alu 1 301 -11 1681 205 21 50 chr21 24843981 24844105 -10063465 - MLT1A1 LTR MaLR -113 252 143 1861 184 70 16 chr21 24844105 24844479 -10063091 + MSTD LTR MaLR 1 394 -2 1681 205 21 50 chr21 24844479 24844618 -10062952 - MLT1A1 LTR MaLR -222 143 1 3307 215 48 23 chr21 24844618 24845377 -10062193 - MLT1A1-int LTR MaLR 0 1735 908 235 272 116 27 chr21 24845928 24846075 -10061495 - MIR SINE MIR -97 165 6 43628 48 6 3 chr21 24846387 24852516 -10055054 + L1PA5 LINE L1 11 6154 0 1731 151 0 46 chr21 24852904 24853229 -10054341 - AluJo SINE Alu 0 312 3 643 247 94 44 chr21 24854126 24854451 -10053119 - MLT1I LTR MaLR 0 450 63 396 248 18 18 chr21 24854534 24854643 -10052927 - MIR SINE MIR -77 131 23 2513 120 77 10 chr21 24854681 24855082 -10052488 + MSTA LTR MaLR 1 428 0 247 218 9 118 chr21 24855110 24855154 -10052416 + MER103 DNA DNA 57 104 -62 2042 130 7 0 chr21 24855154 24855454 -10052116 + AluSq SINE Alu 1 302 -11 247 218 9 118 chr21 24855454 24855519 -10052051 + MER103 DNA DNA 104 154 -12 380 217 28 19 chr21 24856767 24856873 -10050697 - L3 LINE CR1 -279 1298 1192 2017 157 34 0 chr21 24857369 24857694 -10049876 - MER7A DNA MER2_type -12 334 1 189 0 0 0 chr21 24857720 24857741 -10049829 + (CA)n Simple_repeat Simple_repeat 2 22 0 25 0 0 0 chr21 24857874 24857899 -10049671 + AT_rich Low_complexity Low_complexity 1 25 0 2318 68 3 7 chr21 24859511 24859821 -10047749 + AluY SINE Alu 1 309 -2 1576 178 50 3 chr21 24859906 24860204 -10047366 + AluJo SINE Alu 1 312 0 269 326 31 0 chr21 24860542 24860671 -10046899 + MIR3 SINE MIR 55 187 -21 1649 182 10 0 chr21 24861625 24861922 -10045648 - AluJb SINE Alu -12 300 1 226 349 83 0 chr21 24863208 24863340 -10044230 + MIR SINE MIR 65 207 -55 330 214 119 32 chr21 24863606 24863732 -10043838 - MER90 LTR ERV1 -12 563 427 1731 150 14 145 chr21 24863908 24863978 -10043592 - MLT1A1 LTR MaLR -6 359 281 1849 133 0 0 chr21 24863978 24864248 -10043322 + AluSx SINE Alu 43 312 0 1731 150 14 145 chr21 24864248 24864590 -10042980 - MLT1A1 LTR MaLR -84 281 1 1844 139 13 7 chr21 24864927 24865236 -10042334 - AluY SINE Alu 0 311 1 1212 158 33 14 chr21 24865277 24865492 -10042078 + MER20 DNA MER1_type 1 219 0 981 260 16 39 chr21 24866216 24866474 -10041096 + MIR SINE MIR 10 261 -1 1347 266 47 44 chr21 24866479 24867207 -10040363 - HAL1 LINE L1 -785 1722 993 2284 81 0 10 chr21 24868329 24868638 -10038932 - AluSx SINE Alu -6 306 1 904 259 49 17 chr21 24868990 24869418 -10038152 - MLT1C LTR MaLR -1 466 7 1107 174 28 28 chr21 24870790 24871008 -10036562 - MER20 DNA MER1_type 0 219 2 202 323 0 52 chr21 24871105 24871201 -10036369 + L2 LINE L2 3024 3114 -199 1666 172 3 19 chr21 24871258 24871566 -10036004 + AluJo SINE Alu 1 303 -9 370 273 119 46 chr21 24872342 24872602 -10034968 - MLT1J LTR MaLR -128 383 105 456 192 152 0 chr21 24873063 24873162 -10034408 - FLAM_A SINE Alu -19 123 10 1766 153 3 32 chr21 24873198 24873512 -10034058 - AluJb SINE Alu -7 305 1 27 0 0 0 chr21 24873671 24873698 -10033872 + AT_rich Low_complexity Low_complexity 1 27 0 2400 135 0 0 chr21 24874113 24874483 -10033087 - L1PB1 LINE L1 0 6151 5782 284 164 33 0 chr21 24874485 24874546 -10033024 + (TATATG)n Simple_repeat Simple_repeat 6 68 0 2144 73 0 0 chr21 24874546 24874820 -10032750 - L1PB1 LINE L1 -359 5792 5519 1963 167 25 42 chr21 24874863 24875179 -10032391 + MLT2D LTR ERVL 1 321 -93 1996 121 0 0 chr21 24875179 24875460 -10032110 + AluSq SINE Alu 1 281 -32 207 0 0 0 chr21 24875460 24875483 -10032087 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 1963 167 25 42 chr21 24875483 24875525 -10032045 + MLT2D LTR ERVL 319 354 -60 317 147 0 15 chr21 24875530 24875598 -10031972 + (TG)n Simple_repeat Simple_repeat 2 68 0 297 0 0 0 chr21 24875614 24875647 -10031923 + (GA)n Simple_repeat Simple_repeat 2 34 0 338 115 19 0 chr21 24875666 24875718 -10031852 + MLT2D LTR ERVL 466 518 -2 186 43 0 0 chr21 24876400 24876423 -10031147 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 295 272 152 11 chr21 24876735 24876827 -10030743 - L2 LINE L2 0 3272 3168 2088 120 0 13 chr21 24878020 24878329 -10029241 + AluSx SINE Alu 2 306 -6 2037 126 0 13 chr21 24878381 24878691 -10028879 + AluSx SINE Alu 1 306 -6 1937 182 62 0 chr21 24878708 24879076 -10028494 + L1MB5 LINE L1 5776 6166 -8 744 23 0 0 chr21 24879145 24879231 -10028339 - AluY SINE Alu -12 299 214 22 0 0 0 chr21 24879283 24879305 -10028265 + AT_rich Low_complexity Low_complexity 1 22 0 1560 89 0 0 chr21 24879994 24880197 -10027373 - AluSg/x SINE Alu -18 292 90 1120 171 85 107 chr21 24880203 24880338 -10027232 + MLT1A1 LTR MaLR 11 147 -218 1718 153 52 0 chr21 24880338 24880625 -10026945 + AluSx SINE Alu 1 302 -10 1120 171 85 107 chr21 24880625 24880852 -10026718 + MLT1A1 LTR MaLR 147 365 0 804 146 0 0 chr21 24880906 24881070 -10026500 + (TCCA)n Simple_repeat Simple_repeat 3 166 0 686 300 38 25 chr21 24881103 24881343 -10026227 + MIR SINE MIR 20 262 0 357 323 36 42 chr21 24881389 24881581 -10025989 - MLT1K LTR MaLR -230 358 168 439 87 0 14 chr21 24881588 24881657 -10025913 - MSTB2 LTR MaLR -313 144 77 444 37 0 0 chr21 24881664 24881718 -10025852 + (TTCC)n Simple_repeat Simple_repeat 4 57 0 276 30 0 0 chr21 24881712 24881745 -10025825 + (TC)n Simple_repeat Simple_repeat 1 33 0 1612 170 51 3 chr21 24881745 24882039 -10025531 - AluJb SINE Alu -4 308 1 415 93 0 0 chr21 24882042 24882096 -10025474 - MSTB2 LTR MaLR -378 54 1 249 284 99 89 chr21 24883565 24883981 -10023589 + L2 LINE L2 2853 3272 0 22 0 0 0 chr21 24884585 24884607 -10022963 + AT_rich Low_complexity Low_complexity 1 22 0 933 208 77 9 chr21 24885589 24885810 -10021760 + AluJo SINE Alu 1 236 -76 622 299 32 0 chr21 24886245 24886432 -10021138 + MIR SINE MIR 57 249 -13 6126 98 7 18 chr21 24886501 24886712 -10020858 + L1PA13 LINE L1 5279 5491 -672 2203 86 10 10 chr21 24886712 24887014 -10020556 + AluSg SINE Alu 1 302 -8 6126 98 7 18 chr21 24887014 24887692 -10019878 + L1PA13 LINE L1 5491 6158 -5 1829 100 4 33 chr21 24887692 24887963 -10019607 + AluSg SINE Alu 17 279 -31 387 142 8 24 chr21 24887963 24888090 -10019480 + (TTTA)n Simple_repeat Simple_repeat 3 127 0 279 217 8 93 chr21 24888891 24889020 -10018550 + LTR16A1 LTR ERVL 340 457 0 2096 95 0 36 chr21 24889127 24889293 -10018277 - AluSg1 SINE Alu -15 294 124 405 0 0 0 chr21 24889293 24889338 -10018232 + (TG)n Simple_repeat Simple_repeat 2 46 0 2130 86 0 0 chr21 24889341 24889620 -10017950 - AluY SINE Alu -32 279 1 2096 95 0 36 chr21 24889620 24889754 -10017816 - AluSg1 SINE Alu -187 122 1 2054 112 6 13 chr21 24890679 24891124 -10016446 + AluSg SINE Alu 1 443 0 1595 81 0 5 chr21 24891134 24891343 -10016227 + AluY SINE Alu 34 241 -70 288 130 0 0 chr21 24891346 24891392 -10016178 + (A)n Simple_repeat Simple_repeat 1 46 0 2268 76 0 41 chr21 24892177 24892494 -10015076 + AluSx SINE Alu 9 312 0 1103 97 0 38 chr21 24892496 24892682 -10014888 + (TA)n Simple_repeat Simple_repeat 2 180 0 1821 148 3 10 chr21 24892686 24892984 -10014586 + AluJo SINE Alu 1 296 -16 236 298 139 23 chr21 24893976 24894285 -10013285 - L2 LINE L2 -97 3175 2831 387 0 0 0 chr21 24894352 24894395 -10013175 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr21 24894488 24894523 -10013047 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr21 24894941 24894964 -10012606 + (TC)n Simple_repeat Simple_repeat 2 24 0 2115 103 7 0 chr21 24894964 24895256 -10012314 - AluSg SINE Alu -16 294 1 569 246 52 95 chr21 24895257 24895468 -10012102 + HAL1 LINE L1 30 231 -2276 216 0 0 0 chr21 24895544 24895568 -10012002 + (TA)n Simple_repeat Simple_repeat 2 25 0 1747 154 0 33 chr21 24895568 24895873 -10011697 - AluJb SINE Alu -17 295 1 2073 125 0 0 chr21 24897927 24898224 -10009346 + AluSx SINE Alu 1 297 -15 798 222 139 56 chr21 24899323 24899725 -10007845 - MLT1C LTR MaLR -34 433 1 2147 123 0 0 chr21 24900576 24900877 -10006693 - AluSx SINE Alu -1 311 11 297 250 70 30 chr21 24901034 24901134 -10006436 - MIR SINE MIR -6 256 153 572 290 62 55 chr21 24901735 24902248 -10005322 + L1MEd LINE L1 598 1114 -5005 830 187 62 48 chr21 24902252 24902297 -10005273 + MER58A DNA MER1_type 3 46 -2374 2814 82 77 12 chr21 24902297 24902676 -10004894 + MLT2A1 LTR ERVL 1 411 -33 291 54 0 0 chr21 24902676 24902713 -10004857 + (CA)n Simple_repeat Simple_repeat 2 38 0 2814 82 77 12 chr21 24902713 24902750 -10004820 + MLT2A1 LTR ERVL 411 444 0 830 187 62 48 chr21 24902750 24902913 -10004657 + MER58A DNA MER1_type 46 214 -10 1730 159 7 26 chr21 24902913 24903215 -10004355 + AluJb SINE Alu 1 296 -16 315 269 56 9 chr21 24903264 24903372 -10004198 + L1MEd LINE L1 1141 1253 -4866 1284 214 114 52 chr21 24903397 24903837 -10003733 + MLT1C LTR MaLR 1 467 0 627 265 66 52 chr21 24903851 24903983 -10003587 + MLT1H1 LTR MaLR 1 130 -460 2605 108 8 16 chr21 24903983 24904361 -10003209 - THE1C LTR MaLR 0 375 1 627 265 66 52 chr21 24904361 24904563 -10003007 + MLT1H1 LTR MaLR 130 336 -254 1859 137 0 38 chr21 24904968 24905282 -10002288 - AluJb SINE Alu -8 304 3 2026 106 14 3 chr21 24905434 24905726 -10001844 - AluSq SINE Alu -18 295 1 1932 247 113 75 chr21 24906320 24906559 -10001011 + HAL1 LINE L1 472 700 -1807 189 0 0 0 chr21 24906559 24906580 -10000990 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1932 247 113 75 chr21 24906580 24907613 -9999957 + HAL1 LINE L1 700 1793 -714 241 152 106 45 chr21 24907627 24907693 -9999877 + L1MC4 LINE L1 7240 7309 -733 1801 131 44 4 chr21 24907705 24907980 -9999590 - AluSx SINE Alu -26 286 1 192 77 0 0 chr21 24908022 24908048 -9999522 + (GAA)n Simple_repeat Simple_repeat 2 27 0 563 253 53 13 chr21 24908051 24908201 -9999369 + L1MC4 LINE L1 7291 7446 -596 1089 244 107 38 chr21 24908251 24908673 -9998897 + L1MC4 LINE L1 7586 8036 -6 2096 107 0 10 chr21 24908754 24909054 -9998516 + AluSq SINE Alu 2 298 -15 381 267 48 0 chr21 24909132 24909237 -9998333 + MIR SINE MIR 95 204 -58 1599 185 3 0 chr21 24909287 24909674 -9997896 + AluJb SINE Alu 1 312 0 1187 210 155 30 chr21 24910568 24910968 -9996602 + MLT1C LTR MaLR 18 467 0 390 252 96 53 chr21 24911126 24911382 -9996188 + L1MEd LINE L1 1056 1312 -4817 568 145 32 48 chr21 24911393 24911470 -9996100 - L1MA9 LINE L1 -1 6311 6235 1966 119 47 73 chr21 24911470 24911855 -9995715 + THE1C LTR MaLR 1 375 0 568 145 32 48 chr21 24911855 24911901 -9995669 - L1MA9 LINE L1 -77 6235 6190 228 35 0 0 chr21 24911915 24911944 -9995626 + (TG)n Simple_repeat Simple_repeat 1 29 0 1100 116 0 0 chr21 24911971 24912126 -9995444 + L1PB4 LINE L1 6000 6154 -2 342 186 0 0 chr21 24912149 24912219 -9995351 - L1MA9 LINE L1 -172 6140 6071 843 197 36 10 chr21 24912394 24912587 -9994983 + L1M4 LINE L1 4017 4214 -1932 1976 243 25 45 chr21 24912590 24913105 -9994465 + MER45C DNA AcHobo 449 953 0 2146 118 3 0 chr21 24913528 24913832 -9993738 + AluSx SINE Alu 1 305 -7 928 255 72 41 chr21 24913849 24914265 -9993305 - L1MC5 LINE L1 -287 7674 7246 206 309 0 0 chr21 24914292 24914347 -9993223 + CT-rich Low_complexity Low_complexity 1 55 0 276 250 29 99 chr21 24914347 24914519 -9993051 - L1MC5 LINE L1 -731 7230 7071 181 264 14 56 chr21 24915408 24915480 -9992090 + MIR SINE MIR 38 106 -102 516 186 28 76 chr21 24915560 24915705 -9991865 - L1ME3 LINE L1 0 6162 6025 2067 135 3 3 chr21 24915917 24916251 -9991319 - AluSx SINE Alu 0 334 1 2168 172 11 33 chr21 24916424 24916883 -9990687 + L1MB8 LINE L1 5702 6150 -28 543 123 0 0 chr21 24916884 24916965 -9990605 + MSTC LTR MaLR 1 81 -347 1759 176 7 3 chr21 24916966 24917268 -9990302 + AluJb SINE Alu 1 303 -9 1780 127 6 62 chr21 24917268 24917591 -9989979 + AluSq SINE Alu 1 305 -8 585 161 0 0 chr21 24917797 24917904 -9989666 + AluSg/x SINE Alu 193 299 0 258 128 43 0 chr21 24917904 24917951 -9989619 + MSTC LTR MaLR 379 427 -1 242 342 14 0 chr21 24918592 24918665 -9988905 - LTR67 LTR ERVL -370 187 114 23 0 0 0 chr21 24918855 24918878 -9988692 + AT_rich Low_complexity Low_complexity 1 23 0 198 247 40 132 chr21 24918891 24919065 -9988505 - MIR SINE MIR 0 262 105 1855 130 6 44 chr21 24920011 24920327 -9987243 + AluSx SINE Alu 1 304 -8 222 191 0 0 chr21 24926621 24926668 -9980902 + (TG)n Simple_repeat Simple_repeat 2 48 0 226 184 41 0 chr21 24928869 24928918 -9978652 + C-rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr21 24929374 24929395 -9978175 + GC_rich Low_complexity Low_complexity 1 21 0 439 138 0 32 chr21 24930124 24930218 -9977352 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 427 267 0 63 chr21 24930229 24930420 -9977150 + CT-rich Low_complexity Low_complexity 1 179 0 231 228 76 0 chr21 24933176 24933240 -9974330 + MIR SINE MIR 114 183 -79 201 39 0 0 chr21 24937787 24937813 -9969757 + (CTGGGG)n Simple_repeat Simple_repeat 3 28 0 1853 112 59 0 chr21 24939645 24939956 -9967614 - AluSx SINE Alu 0 312 1 541 241 58 0 chr21 24939958 24940095 -9967475 - MIR SINE MIR -103 159 15 23 0 0 0 chr21 24940436 24940459 -9967111 + AT_rich Low_complexity Low_complexity 1 23 0 577 77 13 0 chr21 24943884 24943962 -9963608 + MADE1 DNA Mariner 1 79 -1 1937 105 4 0 chr21 24947281 24947558 -9960012 - AluSx SINE Alu 0 312 35 1388 237 50 29 chr21 24950106 24950549 -9957021 + Charlie4a DNA MER1_type 7 458 -50 2019 105 23 13 chr21 24951277 24951581 -9955989 - AluSq SINE Alu -6 307 1 1699 175 3 3 chr21 24954130 24954422 -9953148 - AluJo SINE Alu -18 294 3 311 318 20 47 chr21 24954424 24954572 -9952998 + MIR3 SINE MIR 44 187 -21 1772 161 10 14 chr21 24954909 24955200 -9952370 + AluJb SINE Alu 1 290 -22 1649 171 24 3 chr21 24955474 24955766 -9951804 - AluJb SINE Alu -14 298 1 317 232 80 54 chr21 24956340 24956452 -9951118 - L1MC4 LINE L1 -932 7110 6996 22 0 0 0 chr21 24956872 24956894 -9950676 + AT_rich Low_complexity Low_complexity 1 22 0 2120 94 14 0 chr21 24956894 24957180 -9950390 - AluSq SINE Alu -23 290 1 319 73 0 36 chr21 24957633 24957688 -9949882 - L1MB3 LINE L1 -2 6181 6129 1824 216 37 11 chr21 24960048 24960502 -9947068 + L1MB4 LINE L1 5715 6180 0 417 268 0 0 chr21 24961412 24961509 -9946061 - MIR SINE MIR -62 146 50 2221 100 0 0 chr21 24961739 24962028 -9945542 - AluSx SINE Alu -23 289 1 1632 131 0 0 chr21 24963072 24963309 -9944261 - AluSx SINE Alu -14 298 62 2348 63 0 7 chr21 24963406 24963706 -9943864 - AluY SINE Alu -13 298 1 189 0 0 0 chr21 24963972 24963993 -9943577 + (CACAC)n Simple_repeat Simple_repeat 3 23 0 1928 185 0 6 chr21 24966590 24967074 -9940496 - AluJo SINE Alu 0 482 1 2167 82 0 14 chr21 24967557 24967839 -9939731 + AluSx SINE Alu 35 312 0 2205 93 3 7 chr21 24968070 24968361 -9939209 + AluSg SINE Alu 1 290 -20 254 128 0 0 chr21 24968361 24968400 -9939170 - MADE1 DNA Mariner -41 39 1 625 267 57 0 chr21 24969002 24969178 -9938392 - MIR SINE MIR -1 261 76 542 256 73 54 chr21 24969212 24969525 -9938045 - L1ME4a LINE L1 -196 5925 5607 831 124 32 63 chr21 24969584 24969911 -9937659 + AluSx SINE Alu 2 378 0 872 179 120 22 chr21 24969972 24970210 -9937360 - L1MB7 LINE L1 -41 6143 5887 192 97 0 0 chr21 24971828 24971859 -9935711 + (T)n Simple_repeat Simple_repeat 1 31 0 23 33 0 0 chr21 24972246 24972276 -9935294 + AT_rich Low_complexity Low_complexity 1 30 0 973 87 0 16 chr21 24972277 24972403 -9935167 - FLAM_C SINE Alu -19 124 1 1946 107 65 0 chr21 24973812 24974075 -9933495 + AluSx SINE Alu 1 280 -32 707 165 23 17 chr21 24974159 24974335 -9933235 + GA-rich Low_complexity Low_complexity 2 178 0 269 229 114 0 chr21 24975462 24975532 -9932038 + MIR SINE MIR 68 145 -117 2256 112 10 0 chr21 24975879 24976182 -9931388 + AluSx SINE Alu 1 306 -6 306 226 63 0 chr21 24977078 24977206 -9930364 + MER3 DNA MER1_type 41 2394 0 33 97 0 0 chr21 24977611 24977714 -9929856 + GC_rich Low_complexity Low_complexity 1 103 0 35 107 0 0 chr21 24977751 24977891 -9929679 + GC_rich Low_complexity Low_complexity 1 140 0 180 200 0 0 chr21 24982996 24983036 -9924534 + (CA)n Simple_repeat Simple_repeat 1 40 0 223 221 29 0 chr21 24983920 24983988 -9923582 + A-rich Low_complexity Low_complexity 4 73 0 313 237 130 117 chr21 24984782 24984960 -9922610 - L1MC4 LINE L1 0 8042 7868 1835 155 23 26 chr21 24984960 24985270 -9922300 + AluJo SINE Alu 1 309 -3 313 237 130 117 chr21 24985270 24985597 -9921973 - L1MC4 LINE L1 -174 7868 7530 423 217 31 2 chr21 24985602 24985747 -9921823 - MER5A DNA MER1_type -1 188 1 375 202 111 20 chr21 24985838 24985937 -9921633 - L1MC4 LINE L1 -601 7441 7334 2605 47 0 40 chr21 24986002 24986324 -9921246 + AluY SINE Alu 1 309 -2 202 241 48 84 chr21 24987651 24987734 -9919836 - L2 LINE L2 0 3313 3234 1928 163 0 10 chr21 24987941 24988254 -9919316 - AluJo SINE Alu -2 310 1 1038 176 0 0 chr21 24988256 24988421 -9919149 - FRAM SINE Alu -11 165 1 229 279 72 72 chr21 24988521 24988547 -9919023 - MIR SINE MIR -63 145 120 2092 125 3 10 chr21 24988547 24988851 -9918719 + AluSg SINE Alu 1 302 -8 229 279 72 72 chr21 24988851 24988935 -9918635 - MIR SINE MIR -87 121 35 2376 97 0 3 chr21 24990174 24990474 -9917096 + AluSg SINE Alu 1 299 -11 415 377 11 0 chr21 24990921 24991096 -9916474 - MIR SINE MIR -35 227 51 551 245 61 0 chr21 24991391 24991554 -9916016 + MER20 DNA MER1_type 42 214 -5 2062 112 49 0 chr21 24992870 24993155 -9914415 - AluSg SINE Alu -11 299 1 2304 103 0 0 chr21 24993962 24994252 -9913318 + AluSc SINE Alu 1 290 -19 1875 171 0 9 chr21 24994267 24994582 -9912988 + AluJb SINE Alu 1 312 0 313 164 146 109 chr21 24995420 24995484 -9912086 + L1MB8 LINE L1 6065 6136 -42 2218 123 3 3 chr21 24995484 24995792 -9911778 - AluSx SINE Alu -4 308 1 313 164 146 109 chr21 24995792 24995837 -9911733 + L1MB8 LINE L1 6136 6178 0 1748 156 62 3 chr21 24995880 24996168 -9911402 - AluJo SINE Alu -7 305 1 399 290 55 5 chr21 24999787 24999987 -9907583 + L1ME4a LINE L1 5698 5907 -214 2336 115 0 3 chr21 24999987 25000292 -9907278 - AluSx SINE Alu -8 304 1 1006 178 82 34 chr21 25000425 25000633 -9906937 - AluJb SINE Alu -10 302 85 2429 73 0 3 chr21 25000783 25001122 -9906448 + AluY SINE Alu 1 311 0 416 388 23 23 chr21 25001199 25001457 -9906113 + L1ME4a LINE L1 5563 5820 -301 2259 87 17 7 chr21 25001562 25001860 -9905710 + AluSq SINE Alu 1 301 -12 22 0 0 0 chr21 25002049 25002071 -9905499 + AT_rich Low_complexity Low_complexity 1 22 0 2060 143 0 7 chr21 25002200 25002508 -9905062 + AluJb SINE Alu 1 306 -6 2305 92 7 0 chr21 25002548 25002842 -9904728 + AluSc SINE Alu 1 296 -13 229 237 52 10 chr21 25002905 25003002 -9904568 + L1ME4a LINE L1 6009 6109 -12 983 227 32 51 chr21 25005970 25006255 -9901315 - L1MC4 LINE L1 -1 8041 7761 2405 106 0 0 chr21 25006255 25006558 -9901012 - AluSg SINE Alu -7 303 1 983 227 32 51 chr21 25006558 25006585 -9900985 - L1MC4 LINE L1 -281 7761 7735 1897 179 42 25 chr21 25006771 25007178 -9900392 - L1MC2 LINE L1 -9 6335 5922 2989 200 82 50 chr21 25007302 25007804 -9899766 - L1MC4 LINE L1 -295 7747 7262 2524 71 0 3 chr21 25007804 25008114 -9899456 - AluY SINE Alu -2 309 1 2989 200 82 50 chr21 25008114 25008125 -9899445 - L1MC4 LINE L1 -780 7262 7253 2147 130 3 0 chr21 25008125 25008424 -9899146 - AluSx SINE Alu -12 300 1 2989 200 82 50 chr21 25008424 25008862 -9898708 - L1MC4 LINE L1 -789 7253 6765 694 201 88 6 chr21 25008956 25009115 -9898455 + MER8 DNA MER2_type 68 239 0 368 118 15 0 chr21 25009118 25009186 -9898384 + (TTCC)n Simple_repeat Simple_repeat 4 72 0 1003 261 46 16 chr21 25009204 25009933 -9897637 - L1MC4 LINE L1 -1211 6597 5891 694 76 0 0 chr21 25009979 25010071 -9897499 + Charlie3 DNA MER1_type 231 322 -2388 2126 86 86 0 chr21 25010083 25010363 -9897207 - AluY SINE Alu -7 304 1 255 287 11 0 chr21 25010364 25010451 -9897119 - L1P4 LINE L1 -348 5826 5739 1410 109 25 67 chr21 25010791 25011029 -9896541 + Charlie3 DNA MER1_type 57 284 -2426 679 85 0 21 chr21 25011029 25011116 -9896454 + AluSp/q SINE Alu 210 301 -12 735 251 124 35 chr21 25011376 25011922 -9895648 - L1 LINE L1 -1797 4349 3767 330 318 71 8 chr21 25011927 25012053 -9895517 - L1 LINE L1 -2409 3737 3604 1909 138 22 47 chr21 25012532 25012852 -9894718 + AluSx SINE Alu 1 312 0 348 164 0 0 chr21 25013643 25013710 -9893860 + (CA)n Simple_repeat Simple_repeat 1 67 0 2132 128 3 7 chr21 25014157 25014461 -9893109 - AluSx SINE Alu -9 303 1 388 311 48 45 chr21 25015374 25015663 -9891907 - L1M4 LINE L1 -1839 4307 4018 1442 153 0 9 chr21 25018888 25019117 -9888453 - AluJo SINE Alu -2 310 84 21 0 0 0 chr21 25019458 25019479 -9888091 + AT_rich Low_complexity Low_complexity 1 21 0 675 267 18 40 chr21 25019731 25019956 -9887614 - L1ME LINE L1 -423 5698 5479 2138 118 0 0 chr21 25019969 25020278 -9887292 + AluSc SINE Alu 1 309 0 207 194 0 42 chr21 25022294 25022366 -9885204 + G-rich Low_complexity Low_complexity 1 69 0 257 250 53 0 chr21 25022461 25022537 -9885033 - MIR SINE MIR -115 147 68 2299 95 0 20 chr21 25023141 25023445 -9884125 - AluSg SINE Alu -12 298 1 181 111 0 0 chr21 25023695 25023722 -9883848 + MIR SINE MIR 87 113 -149 638 306 89 26 chr21 25023999 25024969 -9882601 - L2 LINE L2 -34 3279 2146 247 277 89 59 chr21 25025597 25025698 -9881872 + L2 LINE L2 3208 3311 -2 667 315 49 15 chr21 25025910 25026234 -9881336 + L1M4 LINE L1 3595 3929 -2217 2230 121 0 0 chr21 25026714 25027012 -9880558 - AluSx SINE Alu -14 298 1 61 27 0 0 chr21 25027205 25027280 -9880290 + AT_rich Low_complexity Low_complexity 1 75 0 258 269 60 15 chr21 25027687 25027754 -9879816 - L2 LINE L2 -20 3293 3224 396 309 52 16 chr21 25027849 25028043 -9879527 - L2 LINE L2 -252 3061 2861 2384 215 35 35 chr21 25028130 25029259 -9878311 - L1ME1 LINE L1 -288 5878 4755 215 350 75 0 chr21 25029331 25029491 -9878079 - L2 LINE L2 -1009 2305 2134 183 233 50 58 chr21 25029688 25029808 -9877762 + MIR SINE MIR 97 215 -47 182 262 0 0 chr21 25030145 25030187 -9877383 + L2 LINE L2 3267 3308 -5 293 241 32 114 chr21 25030362 25030520 -9877050 - MIR SINE MIR -90 172 28 804 155 0 40 chr21 25031630 25031778 -9875792 - FLAM_C SINE Alu 0 143 2 240 274 88 9 chr21 25032089 25032202 -9875368 - MLT1J1 LTR MaLR -243 203 82 185 0 40 0 chr21 25033568 25033593 -9873977 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 776 277 87 61 chr21 25036573 25037100 -9870470 - MLT1F LTR MaLR -1 541 1 594 258 112 21 chr21 25037864 25038194 -9869376 - L1ME4a LINE L1 -21 6100 5741 1334 254 63 56 chr21 25038328 25038777 -9868793 - L1MEc LINE L1 -4357 1904 1460 2040 146 0 0 chr21 25038777 25039072 -9868498 + AluSx SINE Alu 1 295 -17 1334 254 63 56 chr21 25039072 25039583 -9867987 - L1MEc LINE L1 -4801 1460 954 1860 167 0 13 chr21 25039583 25039888 -9867682 - AluJo SINE Alu -11 301 1 1334 254 63 56 chr21 25039888 25040301 -9867269 - L1MEc LINE L1 -5307 954 328 874 188 84 91 chr21 25040550 25040848 -9866722 + L1MC4 LINE L1 6772 7067 -975 541 208 32 0 chr21 25040880 25041005 -9866565 - L1MA8 LINE L1 -7 6284 6156 323 315 15 0 chr21 25041722 25041852 -9865718 + MIR3 SINE MIR 70 201 -7 1990 162 0 0 chr21 25042626 25042923 -9864647 + AluJo SINE Alu 6 302 -10 1034 161 33 0 chr21 25044188 25044368 -9863202 + MER53 DNA DNA 1 186 -3 273 256 51 13 chr21 25044598 25044676 -9862894 - MER5A DNA MER1_type -83 106 26 2214 113 7 7 chr21 25044872 25045173 -9862397 - AluSx SINE Alu -11 301 1 1379 139 0 14 chr21 25046046 25046254 -9861316 + AluJb SINE Alu 92 296 -16 364 293 126 18 chr21 25049427 25049649 -9857921 - MIR SINE MIR -12 250 5 2070 184 8 61 chr21 25050068 25050677 -9856893 + MER52A LTR ERV1 42 757 -684 180 143 54 18 chr21 25051718 25051774 -9855796 + GA-rich Low_complexity Low_complexity 4 61 0 2127 111 0 33 chr21 25051984 25052290 -9855280 + AluSg SINE Alu 1 296 -14 292 243 135 0 chr21 25052929 25053003 -9854567 - MER104 DNA MER2_type -1808 87 4 342 0 0 0 chr21 25053455 25053493 -9854077 + (TG)n Simple_repeat Simple_repeat 2 39 0 1003 53 0 0 chr21 25053842 25053956 -9853614 + AluSq/x SINE Alu 1 114 -199 3226 114 22 10 chr21 25053956 25054454 -9853116 + L1PA8 LINE L1 5669 6172 0 1386 219 25 21 chr21 25054951 25055234 -9852336 + AluJo SINE Alu 1 284 -28 22 35 0 0 chr21 25055234 25055263 -9852307 + AT_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr21 25055303 25055329 -9852241 + (TG)n Simple_repeat Simple_repeat 2 27 0 220 273 41 2 chr21 25056572 25056680 -9850890 - MIR SINE MIR -95 167 32 2462 72 3 22 chr21 25057131 25057450 -9850120 + AluSq SINE Alu 1 313 0 2470 94 0 0 chr21 25057648 25057957 -9849613 - AluY SINE Alu -2 309 1 22 0 0 0 chr21 25058133 25058155 -9849415 + AT_rich Low_complexity Low_complexity 1 22 0 399 41 0 0 chr21 25058211 25058260 -9849310 + (TGAA)n Simple_repeat Simple_repeat 2 50 0 1963 168 7 63 chr21 25059762 25060174 -9847396 + MLT1B LTR MaLR 2 390 0 1717 143 68 27 chr21 25060396 25060690 -9846880 + AluJb SINE Alu 1 306 -6 2167 112 3 10 chr21 25061243 25061539 -9846031 + AluSx SINE Alu 1 294 -18 26 0 0 0 chr21 25061648 25061674 -9845896 + AT_rich Low_complexity Low_complexity 1 26 0 639 235 74 0 chr21 25062354 25062516 -9845054 - MIR SINE MIR -26 236 63 1423 164 46 30 chr21 25062884 25063147 -9844423 - AluJb SINE Alu -19 293 27 2072 124 7 7 chr21 25063147 25063437 -9844133 + AluSx SINE Alu 1 290 -22 189 0 0 0 chr21 25063438 25063459 -9844111 + (TA)n Simple_repeat Simple_repeat 1 21 0 1329 203 0 8 chr21 25063783 25064024 -9843546 - MER8 DNA MER2_type 0 239 1 2416 76 0 0 chr21 25064409 25064698 -9842872 - AluSc SINE Alu -20 289 1 1944 14 18 0 chr21 25066160 25066383 -9841187 - L1PA3 LINE L1 0 6155 5929 1960 31 0 0 chr21 25066383 25066637 -9840933 + L1M LINE L1 5167 5420 -743 2372 92 7 0 chr21 25066747 25067053 -9840517 + AluSx SINE Alu 1 308 -4 22 35 0 0 chr21 25067460 25067489 -9840081 + AT_rich Low_complexity Low_complexity 1 29 0 259 265 88 0 chr21 25068125 25068143 -9839427 + MLT1C LTR MaLR 1 16 -489 279 0 0 0 chr21 25068143 25068174 -9839396 + (CA)n Simple_repeat Simple_repeat 1 31 0 259 265 88 0 chr21 25068174 25068257 -9839313 + MLT1C LTR MaLR 16 111 -394 2438 77 3 0 chr21 25068268 25068568 -9839002 + AluY SINE Alu 1 301 -10 893 246 90 11 chr21 25068579 25068847 -9838723 + MLT1C LTR MaLR 172 460 -7 33 0 0 0 chr21 25070128 25070161 -9837409 + AT_rich Low_complexity Low_complexity 1 33 0 2356 82 0 7 chr21 25070465 25070757 -9836813 - AluSq SINE Alu -23 290 1 234 122 0 0 chr21 25070870 25070911 -9836659 + L1ME3 LINE L1 6122 6162 0 248 259 267 0 chr21 25071403 25071519 -9836051 + MIR SINE MIR 4 150 -112 1367 202 55 0 chr21 25071752 25072024 -9835546 + L1ME3A LINE L1 5568 5854 -316 703 261 81 8 chr21 25072025 25072285 -9835285 + L1ME3A LINE L1 5883 6161 -9 2074 138 0 10 chr21 25072302 25072613 -9834957 + AluSx SINE Alu 1 308 -4 1832 145 4 0 chr21 25073011 25073280 -9834290 + AluJo SINE Alu 11 280 -32 1672 177 0 17 chr21 25073565 25073864 -9833706 + AluJo SINE Alu 1 294 -18 1343 163 42 67 chr21 25073972 25074303 -9833267 + L1MC2 LINE L1 6013 6335 -9 180 0 0 0 chr21 25074308 25074328 -9833242 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 287 275 53 11 chr21 25075828 25075966 -9831604 + MIR SINE MIR 112 256 -6 201 103 0 0 chr21 25076144 25076173 -9831397 + MIR SINE MIR 228 256 -6 200 216 20 0 chr21 25076347 25076398 -9831172 + (TTG)n Simple_repeat Simple_repeat 1 52 0 466 322 44 6 chr21 25077851 25078034 -9829536 - L1ME LINE L1 -348 5773 5584 252 262 138 25 chr21 25078041 25078116 -9829454 - L1ME LINE L1 -2240 5568 5484 2310 98 7 0 chr21 25078116 25078412 -9829158 - AluSx SINE Alu -14 298 1 377 257 35 42 chr21 25079537 25079681 -9827889 + LTR67 LTR ERVL 410 552 -5 4539 119 20 0 chr21 25080984 25081671 -9825899 + L1MA2 LINE L1 5604 6304 0 555 210 8 0 chr21 25081755 25081874 -9825696 + 5S rRNA rRNA 1 120 -1 527 279 28 64 chr21 25082988 25083271 -9824299 + Charlie2 DNA MER1_type 49 321 -2461 1592 229 40 20 chr21 25083279 25083733 -9823837 + Charlie2a DNA MER1_type 1617 2079 -783 1479 225 62 2 chr21 25083748 25084148 -9823422 + Charlie2a DNA MER1_type 2439 2862 0 323 211 84 0 chr21 25084475 25084546 -9823024 + MER20B DNA MER1_type 5 81 -703 355 178 20 132 chr21 25085026 25085093 -9822477 + MER20B DNA MER1_type 649 722 -62 2262 112 0 22 chr21 25085093 25085407 -9822163 + AluSx SINE Alu 1 307 -5 355 178 20 132 chr21 25085407 25085431 -9822139 + MER20B DNA MER1_type 722 747 -37 1780 168 14 7 chr21 25085431 25085722 -9821848 - AluJb SINE Alu -19 293 1 355 178 20 132 chr21 25085722 25085751 -9821819 + MER20B DNA MER1_type 747 752 -32 1649 150 25 42 chr21 25085751 25086105 -9821465 + L1MB7 LINE L1 5835 6182 -2 355 178 20 132 chr21 25086105 25086134 -9821436 + MER20B DNA MER1_type 752 783 -1 2329 117 0 0 chr21 25087623 25087932 -9819638 - AluSg SINE Alu -1 309 1 23 0 0 0 chr21 25087941 25087964 -9819606 + AT_rich Low_complexity Low_complexity 1 23 0 275 295 196 0 chr21 25088345 25088457 -9819113 - L2 LINE L2 0 3313 3180 2388 92 0 0 chr21 25088862 25089165 -9818405 - AluSg SINE Alu -7 303 1 472 233 47 27 chr21 25090018 25090168 -9817402 - MIR SINE MIR -88 174 22 217 252 72 72 chr21 25090884 25090995 -9816575 - L2 LINE L2 -1 3271 3161 1742 139 10 7 chr21 25091231 25091519 -9816051 - L1PA13 LINE L1 0 6163 5875 4316 175 35 27 chr21 25091596 25092457 -9815113 - L1MB7 LINE L1 0 6184 5317 649 105 184 18 chr21 25092789 25092903 -9814667 - FLAM_A SINE Alu 0 133 1 1052 220 70 26 chr21 25093708 25093959 -9813611 - Charlie2 DNA MER1_type -1 2861 2590 2312 99 14 0 chr21 25093959 25094251 -9813319 + AluSx SINE Alu 1 296 -16 1052 220 70 26 chr21 25094251 25094340 -9813230 - Charlie2 DNA MER1_type -272 2590 2506 1638 186 79 15 chr21 25094367 25094823 -9812747 - Charlie2 DNA MER1_type -406 2456 1972 371 276 62 70 chr21 25094831 25095074 -9812496 - Charlie2 DNA MER1_type -2451 331 91 276 264 22 22 chr21 25097117 25097208 -9810362 + L1M4 LINE L1 5768 5858 -320 560 221 0 52 chr21 25097411 25097547 -9810023 + MLT1J1 LTR MaLR 188 316 -130 1987 114 6 60 chr21 25097695 25098010 -9809560 + AluSx SINE Alu 1 298 -14 489 111 72 0 chr21 25098010 25098147 -9809423 + GA-rich Low_complexity Low_complexity 1 146 0 2355 52 0 28 chr21 25098942 25099276 -9808294 - AluY SINE Alu 0 326 1 21 0 0 0 chr21 25100319 25100340 -9807230 + AT_rich Low_complexity Low_complexity 1 21 0 1009 191 9 12 chr21 25101535 25101854 -9805716 + L1ME LINE L1 5200 5515 -647 1979 60 120 11 chr21 25101985 25102251 -9805319 + AluSc SINE Alu 1 295 -14 2730 230 54 26 chr21 25102365 25102958 -9804612 - L1ME2 LINE L1 -174 6384 5809 2446 89 0 0 chr21 25102958 25103260 -9804310 - AluSc SINE Alu -7 302 1 2730 230 54 26 chr21 25103260 25103467 -9804103 - L1ME2 LINE L1 -749 5809 5609 1544 194 61 4 chr21 25103467 25103745 -9803825 - AluJo SINE Alu -18 294 1 2730 230 54 26 chr21 25103745 25104056 -9803514 - L1ME2 LINE L1 -949 5609 5225 1717 52 0 0 chr21 25104056 25104292 -9803278 + AluY SINE Alu 92 327 0 2730 230 54 26 chr21 25104292 25104495 -9803075 - L1ME2 LINE L1 -1333 5225 5029 4715 205 68 60 chr21 25104501 25106163 -9801407 + MER52A LTR ERV1 9 1755 0 390 300 0 0 chr21 25106174 25106294 -9801276 - L1ME2 LINE L1 -1518 5022 4903 2580 255 44 24 chr21 25106311 25107412 -9800158 - L1ME2 LINE L1 -3211 3329 2249 1552 275 74 11 chr21 25107528 25108146 -9799424 - L1ME2 LINE L1 -4480 2060 1404 234 352 121 22 chr21 25108323 25108505 -9799065 - MIR SINE MIR -16 246 47 285 387 8 8 chr21 25108560 25108684 -9798886 + L3 LINE CR1 337 460 -1117 473 327 19 28 chr21 25108734 25108945 -9798625 + MIR SINE MIR 54 262 0 1530 160 85 7 chr21 25109494 25109776 -9797794 + AluJo SINE Alu 1 304 -8 216 0 0 0 chr21 25110223 25110247 -9797323 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2050 104 11 0 chr21 25110799 25111114 -9796456 - AluSx SINE Alu 0 318 1 873 140 22 0 chr21 25111704 25111840 -9795730 + AluSg/x SINE Alu 137 275 -35 2291 82 0 0 chr21 25111845 25112138 -9795432 + AluY SINE Alu 1 293 -18 302 213 43 94 chr21 25112149 25112245 -9795325 - MIR3 SINE MIR -48 160 67 1879 99 0 76 chr21 25112278 25112605 -9794965 - AluSc SINE Alu 0 304 1 2315 200 60 10 chr21 25113653 25114138 -9793432 - LTR22 LTR ERVK 0 509 1 1955 144 0 3 chr21 25115071 25115369 -9792201 + AluJo SINE Alu 3 299 -13 387 167 12 24 chr21 25115908 25115992 -9791578 + MARNA DNA Mariner 311 393 -193 2301 82 0 7 chr21 25115994 25116300 -9791270 + AluY SINE Alu 1 304 -7 1221 204 57 75 chr21 25116474 25116689 -9790881 + MLT1A1 LTR MaLR 1 208 -157 2035 120 0 10 chr21 25116689 25116990 -9790580 + AluSx SINE Alu 1 298 -14 1221 204 57 75 chr21 25116990 25117146 -9790424 + MLT1A1 LTR MaLR 208 365 0 477 47 0 0 chr21 25118290 25118354 -9789216 + (TA)n Simple_repeat Simple_repeat 2 65 0 392 245 73 25 chr21 25118529 25118704 -9788866 - MIR3 SINE MIR -2 206 21 277 274 0 0 chr21 25118923 25118985 -9788585 + L2 LINE L2 3205 3266 -6 1978 118 39 60 chr21 25119721 25120104 -9787466 + THE1C LTR MaLR 1 375 0 728 269 93 47 chr21 25120791 25121092 -9786478 + MLT1J LTR MaLR 1 315 -196 692 134 0 0 chr21 25122811 25122908 -9784662 - FLAM_C SINE Alu -35 108 12 2133 103 0 7 chr21 25122924 25123216 -9784354 - AluSx SINE Alu -22 290 1 2028 119 72 13 chr21 25123351 25123669 -9783901 - MER1B DNA MER1_type 0 337 1 2300 97 156 5 chr21 25123805 25124177 -9783393 + MSTA LTR MaLR 1 428 0 1894 128 0 0 chr21 25125922 25126196 -9781374 + AluJb SINE Alu 11 284 -28 338 269 62 39 chr21 25127912 25128010 -9779560 + L1MC5 LINE L1 7311 7414 -547 2230 93 3 3 chr21 25128010 25128321 -9779249 + AluSq SINE Alu 3 313 0 338 269 62 39 chr21 25128321 25128352 -9779218 + L1MC5 LINE L1 7414 7443 -518 275 264 28 38 chr21 25128413 25128519 -9779051 + L1MC5 LINE L1 7472 7576 -385 1853 151 0 0 chr21 25128623 25128915 -9778655 + AluJb SINE Alu 1 292 -20 386 234 37 37 chr21 25129035 25129142 -9778428 + L1MC5 LINE L1 7825 7931 -30 1944 130 3 0 chr21 25129186 25129470 -9778100 + AluSx SINE Alu 1 285 -27 1930 299 66 50 chr21 25129522 25129668 -9777902 - L2 LINE L2 -2 3311 3169 2034 132 0 3 chr21 25129668 25129979 -9777591 + AluSx SINE Alu 3 312 0 1930 299 66 50 chr21 25129979 25130823 -9776747 - L2 LINE L2 -144 3169 2313 1844 116 61 27 chr21 25130823 25131117 -9776453 + AluSx SINE Alu 1 304 -8 1930 299 66 50 chr21 25131117 25131282 -9776288 - L2 LINE L2 -1000 2313 2152 1618 206 66 30 chr21 25131289 25131727 -9775843 - MLT1C LTR MaLR -13 454 1 180 328 16 0 chr21 25131727 25131788 -9775782 - L2 LINE L2 -1187 2127 2066 737 281 103 7 chr21 25131893 25132174 -9775396 - L2 LINE L2 -1371 1943 1636 962 246 39 72 chr21 25132391 25132752 -9774818 - L2 LINE L2 -1836 1478 1130 1226 218 100 38 chr21 25133624 25133995 -9773575 + MSTD LTR MaLR 1 394 -2 355 286 99 44 chr21 25134916 25135098 -9772472 + L2 LINE L2 3119 3310 -3 2178 190 45 67 chr21 25135525 25135613 -9771957 + L1ME1 LINE L1 4234 4322 -1824 2057 131 7 0 chr21 25135613 25135919 -9771651 + AluSx SINE Alu 1 308 -4 2178 190 45 67 chr21 25135919 25136104 -9771466 + L1ME1 LINE L1 4322 4510 -1636 1518 176 7 21 chr21 25136104 25136393 -9771177 + AluJo SINE Alu 16 300 -12 2178 190 45 67 chr21 25136393 25136743 -9770827 + L1ME1 LINE L1 4510 4844 -1302 668 182 0 16 chr21 25136754 25136875 -9770695 - FRAM SINE Alu -15 161 43 1801 205 30 43 chr21 25136880 25137217 -9770353 + L1ME1 LINE L1 4851 5168 -994 2062 121 14 0 chr21 25137217 25137514 -9770056 + AluSx SINE Alu 1 301 -11 1801 205 30 43 chr21 25137514 25137823 -9769747 + L1ME1 LINE L1 5168 5480 -682 665 171 0 0 chr21 25137829 25137940 -9769630 + FRAM SINE Alu 64 174 -2 1677 173 3 19 chr21 25137946 25138253 -9769317 + AluJo SINE Alu 1 302 -10 2397 180 119 59 chr21 25138270 25138764 -9768806 + L1ME1 LINE L1 5495 6037 -129 2124 80 0 10 chr21 25138764 25139052 -9768518 + AluY SINE Alu 9 293 -18 2397 180 119 59 chr21 25139052 25139186 -9768384 + L1ME1 LINE L1 6037 6161 -5 854 199 0 0 chr21 25139439 25139590 -9767980 - FRAM SINE Alu -15 161 11 2060 108 0 3 chr21 25140106 25140403 -9767167 + AluSx SINE Alu 1 296 -16 227 37 0 0 chr21 25141276 25141303 -9766267 + L1MB4 LINE L1 5579 5605 -579 2392 65 0 16 chr21 25141306 25141615 -9765955 + AluY SINE Alu 1 304 -7 2233 99 0 7 chr21 25141629 25141932 -9765638 + AluSq SINE Alu 1 301 -12 2704 189 15 30 chr21 25141932 25142521 -9765049 + L1MB4 LINE L1 5598 6179 -1 328 257 34 68 chr21 25142946 25143094 -9764476 - MIR SINE MIR -109 153 11 1946 105 20 17 chr21 25143322 25143617 -9763953 + AluSq SINE Alu 1 296 -17 298 256 23 78 chr21 25143877 25144006 -9763564 - LTR33 LTR ERVL -307 214 93 275 167 0 0 chr21 25144265 25144307 -9763263 + L2 LINE L2 3262 3303 -10 181 246 115 85 chr21 25144975 25145105 -9762465 + MIR3 SINE MIR 34 167 -41 237 336 92 46 chr21 25145830 25145961 -9761609 - L2 LINE L2 -21 3251 3115 1335 164 35 90 chr21 25146204 25146514 -9761056 - AluJo SINE Alu -19 293 1 262 261 9 61 chr21 25146848 25146963 -9760607 + L1MC4 LINE L1 7933 8041 -1 1172 249 31 22 chr21 25148779 25149096 -9758474 + L1MC5 LINE L1 7592 7911 -50 1608 191 7 10 chr21 25149893 25150197 -9757373 + AluJo SINE Alu 3 305 -7 1752 142 17 17 chr21 25150208 25150510 -9757060 + L1MA2 LINE L1 6003 6304 0 2271 88 7 0 chr21 25151006 25151303 -9756267 + AluSg SINE Alu 1 299 -11 213 217 29 14 chr21 25151818 25151887 -9755683 + (TA)n Simple_repeat Simple_repeat 2 71 0 320 238 12 0 chr21 25152086 25152166 -9755404 - L1MA7 LINE L1 -1 6290 6210 2184 119 0 0 chr21 25154119 25154429 -9753141 + AluSq SINE Alu 1 310 -3 309 180 0 0 chr21 25154758 25154819 -9752751 + L1MA9 LINE L1 6216 6276 -36 334 164 103 82 chr21 25156457 25156575 -9750995 - L1ME4a LINE L1 -23 6098 5984 2024 141 0 10 chr21 25156575 25156887 -9750683 - AluJb SINE Alu -3 309 1 348 219 12 0 chr21 25156832 25156911 -9750659 - AluJ/monomer SINE Alu -247 55 1 334 164 103 82 chr21 25156887 25156914 -9750656 - L1ME4a LINE L1 -137 5984 5950 1866 143 17 3 chr21 25158133 25158427 -9749143 + AluJb SINE Alu 1 298 -14 956 118 0 22 chr21 25160350 25160486 -9747084 - AluJo SINE Alu -169 133 1 197 250 0 0 chr21 25160780 25160820 -9746750 + MIR SINE MIR 71 110 -152 2382 72 3 0 chr21 25160843 25161150 -9746420 + AluSp SINE Alu 1 308 -5 1815 132 18 4 chr21 25161322 25161603 -9745967 + AluJb SINE Alu 14 298 -14 3386 165 25 26 chr21 25161631 25162237 -9745333 + MER6A DNA MER2_type 1 605 0 2025 123 0 0 chr21 25162677 25162970 -9744600 + AluSx SINE Alu 1 293 -19 1731 97 8 12 chr21 25163169 25163417 -9744153 + AluSq SINE Alu 61 307 -6 690 238 7 0 chr21 25164099 25164246 -9743324 + MER20 DNA MER1_type 72 219 0 246 273 18 0 chr21 25167732 25167787 -9739783 - L2 LINE L2 -2 3311 3256 1593 158 14 28 chr21 25168360 25168645 -9738925 - AluJb SINE Alu -31 281 1 299 318 28 34 chr21 25169228 25169407 -9738163 + MER5A DNA MER1_type 7 184 -5 1412 90 0 0 chr21 25169721 25169909 -9737661 + AluSg/x SINE Alu 112 299 -11 22 70 0 0 chr21 25170142 25170185 -9737385 + AT_rich Low_complexity Low_complexity 1 43 0 709 194 0 0 chr21 25170188 25170317 -9737253 - FLAM_A SINE Alu -4 129 1 677 221 22 39 chr21 25170582 25170607 -9736963 + L1ME2 LINE L1 4775 4799 -1347 1748 134 59 93 chr21 25170607 25170771 -9736799 + THE1C LTR MaLR 2 170 -205 1984 130 0 0 chr21 25170771 25171055 -9736515 + AluSx SINE Alu 1 284 -28 1748 134 59 93 chr21 25171055 25171277 -9736293 + THE1C LTR MaLR 170 375 0 677 221 22 39 chr21 25171277 25171432 -9736138 + L1ME2 LINE L1 4799 4952 -1194 1525 112 56 42 chr21 25171436 25171564 -9736006 + AluSq SINE Alu 1 126 -187 2083 103 7 7 chr21 25171564 25171865 -9735705 + AluSq SINE Alu 1 301 -12 1525 112 56 42 chr21 25171865 25172023 -9735547 + AluSq SINE Alu 126 291 -22 799 93 0 0 chr21 25172161 25172269 -9735301 + AluSg/x SINE Alu 201 308 -1 1158 147 47 39 chr21 25172270 25172624 -9734946 + L1ME2 LINE L1 4947 5334 -812 1140 84 0 0 chr21 25172641 25172796 -9734774 + AluY SINE Alu 152 306 -5 1397 182 63 13 chr21 25172796 25173098 -9734472 + L1ME2 LINE L1 5361 5677 -501 1733 132 34 30 chr21 25173379 25173675 -9733895 + AluJb SINE Alu 1 297 -15 1296 243 47 6 chr21 25174012 25174374 -9733196 + L1ME2 LINE L1 5787 6163 -1 221 253 0 13 chr21 25174405 25174480 -9733090 + T-rich Low_complexity Low_complexity 5 78 0 2250 86 7 0 chr21 25174682 25174974 -9732596 + AluY SINE Alu 1 294 -17 311 114 0 0 chr21 25175006 25175050 -9732520 + L1MA9 LINE L1 6047 6090 -222 2571 167 30 18 chr21 25175163 25175661 -9731909 + L1MB7 LINE L1 5662 6165 -19 539 321 43 0 chr21 25175716 25175900 -9731670 + MIR SINE MIR 23 214 -48 546 98 0 152 chr21 25176008 25176078 -9731492 + MER106B DNA MER1_type 57 105 -954 1981 141 16 0 chr21 25176078 25176383 -9731187 - AluJo SINE Alu -2 310 1 546 98 0 152 chr21 25176383 25176424 -9731146 + MER106B DNA MER1_type 105 151 -908 2120 109 0 3 chr21 25177851 25178154 -9729416 + AluSg SINE Alu 1 302 -8 2006 130 3 3 chr21 25178288 25178596 -9728974 + AluJb SINE Alu 1 308 -4 1699 262 78 19 chr21 25178982 25179467 -9728103 - MLT1G1 LTR MaLR 0 595 82 1105 156 0 62 chr21 25180309 25180533 -9727037 - AluJo SINE Alu -17 295 86 194 204 130 0 chr21 25181198 25181252 -9726318 + L2 LINE L2 2927 2987 -285 247 250 0 0 chr21 25181488 25181540 -9726030 + L2 LINE L2 3214 3265 -7 2238 95 3 0 chr21 25182353 25182657 -9724913 + AluSc SINE Alu 1 305 -4 698 166 106 46 chr21 25182947 25183098 -9724472 - FRAM SINE Alu -2 164 5 23 33 0 0 chr21 25183601 25183631 -9723939 + AT_rich Low_complexity Low_complexity 1 30 0 2721 142 73 60 chr21 25183667 25183865 -9723705 + Tigger3b DNA MER2_type 1 195 -2833 2081 75 11 7 chr21 25183865 25184168 -9723402 + AluSc SINE Alu 1 304 0 2300 70 3 7 chr21 25184174 25184472 -9723098 + AluY SINE Alu 1 297 -14 2721 142 73 60 chr21 25184472 25184588 -9722982 + Tigger3b DNA MER2_type 199 312 -2716 275 0 29 0 chr21 25184588 25184623 -9722947 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 1903 132 7 0 chr21 25184623 25184910 -9722660 + AluSx SINE Alu 2 290 -22 2721 142 73 60 chr21 25184910 25185149 -9722421 + Tigger3b DNA MER2_type 311 571 -660 506 238 0 9 chr21 25185152 25185257 -9722313 + FLAM_C SINE Alu 2 105 -38 3849 116 60 18 chr21 25185297 25185952 -9721618 + Tigger3b DNA MER2_type 545 1226 -5 2152 88 0 7 chr21 25186288 25186603 -9720967 + AluY SINE Alu 1 313 0 2061 96 3 7 chr21 25186621 25186913 -9720657 + AluSx SINE Alu 11 301 -11 1903 189 111 8 chr21 25186931 25187317 -9720253 + MSTB LTR MaLR 1 426 0 301 194 14 42 chr21 25187320 25187392 -9720178 - MER116 DNA Mariner -9 71 2 34 55 0 0 chr21 25187396 25187451 -9720119 + AT_rich Low_complexity Low_complexity 1 55 0 2088 93 21 0 chr21 25187495 25187785 -9719785 + AluY SINE Alu 1 296 -15 2118 78 48 0 chr21 25187787 25187907 -9719663 + AluY SINE Alu 1 114 -197 212 0 0 35 chr21 25187907 25187936 -9719634 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2118 78 48 0 chr21 25187936 25188110 -9719460 + AluY SINE Alu 114 309 -2 2070 109 3 3 chr21 25188348 25188650 -9718920 + AluSx SINE Alu 1 302 -10 3451 168 45 35 chr21 25188849 25190202 -9717368 + MER52A LTR ERV1 203 1755 0 698 225 19 0 chr21 25191217 25191377 -9716193 + FRAM SINE Alu 2 164 -12 452 62 74 0 chr21 25191378 25191459 -9716111 - Charlie5 DNA MER1_type -76 2536 2450 2234 100 0 0 chr21 25191513 25191813 -9715757 + AluSx SINE Alu 1 300 -12 1916 126 3 19 chr21 25192348 25192657 -9714913 + AluJb SINE Alu 1 304 -8 2158 75 35 0 chr21 25193321 25193603 -9713967 + AluSp SINE Alu 1 292 -21 2062 95 3 11 chr21 25193782 25194067 -9713503 + AluSx SINE Alu 2 284 -28 362 169 88 162 chr21 25194765 25194925 -9712645 + MER105 DNA DNA 5 152 -52 1690 111 3 97 chr21 25195559 25195901 -9711669 - AluJo SINE Alu -2 310 1 22 56 0 0 chr21 25196247 25196283 -9711287 + GC_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr21 25196332 25196365 -9711205 + GC_rich Low_complexity Low_complexity 1 33 0 44 80 0 0 chr21 25196480 25196580 -9710990 + GC_rich Low_complexity Low_complexity 1 100 0 291 274 0 51 chr21 25196584 25196759 -9710811 + G-rich Low_complexity Low_complexity 3 168 0 2259 77 7 0 chr21 25197562 25197861 -9709709 - AluSx SINE Alu -11 301 1 1245 152 140 34 chr21 25197869 25198133 -9709437 - AluJo SINE Alu -20 292 1 415 217 43 0 chr21 25199173 25199265 -9708305 + MER5A DNA MER1_type 9 104 -85 2124 93 24 0 chr21 25199423 25199714 -9707856 - AluSx SINE Alu -14 298 1 1744 174 0 0 chr21 25200075 25200374 -9707196 - AluJb SINE Alu -13 299 1 930 125 0 7 chr21 25200374 25200510 -9707060 - AluJo SINE Alu -177 135 1 2373 71 0 7 chr21 25200553 25200862 -9706708 + AluY SINE Alu 2 308 -3 673 234 97 25 chr21 25201027 25201344 -9706226 + L1MC4 LINE L1 6564 6960 -933 2008 134 0 0 chr21 25201388 25201687 -9705883 + AluSx SINE Alu 1 299 -13 617 235 23 0 chr21 25202155 25202287 -9705283 - FLAM_C SINE Alu -7 136 2 1559 159 0 48 chr21 25202775 25203070 -9704500 + AluJb SINE Alu 1 281 -31 216 0 0 0 chr21 25203070 25203094 -9704476 + (T)n Simple_repeat Simple_repeat 1 24 0 341 266 84 42 chr21 25203147 25203290 -9704280 + L1M LINE L1 5255 5403 -2382 691 249 146 56 chr21 25203471 25203554 -9704016 - LTR33A LTR ERVL -15 508 434 2149 75 4 4 chr21 25203554 25203856 -9703714 + AluSq SINE Alu 5 306 0 691 249 146 56 chr21 25203856 25204235 -9703335 - LTR33A LTR ERVL -89 434 2 1645 186 69 19 chr21 25204315 25204753 -9702817 + MLT1B LTR MaLR 5 390 0 264 353 59 36 chr21 25204885 25205106 -9702464 + L2 LINE L2 2248 2473 -841 1368 165 5 0 chr21 25205418 25205630 -9701940 + AluJo SINE Alu 87 299 -13 436 316 102 28 chr21 25205689 25205904 -9701666 - MIR SINE MIR -11 251 21 228 67 0 0 chr21 25206234 25206264 -9701306 + (CA)n Simple_repeat Simple_repeat 1 30 0 1216 134 21 0 chr21 25206265 25206451 -9701119 + AluSg/x SINE Alu 119 308 -2 651 141 141 0 chr21 25206451 25206586 -9700984 + L1MD3 LINE L1 7831 7984 -11 251 333 14 0 chr21 25206826 25206898 -9700672 + L2 LINE L2 3226 3298 -15 191 301 14 41 chr21 25207485 25207558 -9700012 + MIR3 SINE MIR 9 79 -129 2249 106 10 7 chr21 25208055 25208358 -9699212 + AluSx SINE Alu 1 304 -8 2512 70 0 13 chr21 25208829 25209144 -9698426 + AluY SINE Alu 1 311 0 1517 189 19 29 chr21 25209474 25209616 -9697954 + AluJo SINE Alu 1 143 -169 1768 128 110 4 chr21 25209616 25209897 -9697673 + AluJb SINE Alu 1 311 -1 1517 189 19 29 chr21 25209897 25210066 -9697504 + AluJo SINE Alu 143 309 -3 332 291 70 70 chr21 25210821 25211020 -9696550 + L2 LINE L2 2993 3191 -81 2376 105 3 0 chr21 25211238 25211542 -9696028 - AluSx SINE Alu -7 305 1 554 314 57 27 chr21 25211911 25212315 -9695255 - L1ME3A LINE L1 -222 5948 5533 2338 95 0 19 chr21 25212591 25212906 -9694664 + AluSg1 SINE Alu 1 309 0 2269 117 0 19 chr21 25213036 25213353 -9694217 - AluSx SINE Alu -1 311 1 2443 71 0 0 chr21 25213398 25213693 -9693877 + AluY SINE Alu 1 295 -16 1585 184 28 10 chr21 25213693 25213981 -9693589 - AluJo SINE Alu -19 293 1 1728 154 154 102 chr21 25214050 25214420 -9693150 - MER44D DNA MER2_type -1883 604 143 1376 146 42 17 chr21 25214420 25214660 -9692910 + L1PB4 LINE L1 5911 6156 0 1728 154 154 102 chr21 25214660 25214810 -9692760 - MER44D DNA MER2_type -2344 143 2 952 203 72 66 chr21 25214838 25215187 -9692383 - L1MC4 LINE L1 -139 7903 7553 1228 44 0 0 chr21 25215194 25215329 -9692241 + AluSq/x SINE Alu 1 135 -178 2314 101 0 3 chr21 25215330 25215628 -9691942 + AluSc SINE Alu 2 298 -11 399 171 24 1 chr21 25215631 25215724 -9691846 - L1MC4 LINE L1 -345 7463 7377 300 282 76 0 chr21 25215710 25215841 -9691729 - L1MC4a LINE L1 -473 7335 7195 1397 171 42 38 chr21 25215857 25216203 -9691367 + MSTD LTR MaLR 1 396 0 2176 102 20 10 chr21 25216258 25216561 -9691009 - AluSp SINE Alu -7 306 1 801 119 0 0 chr21 25216586 25216695 -9690875 - HY1 scRNA scRNA -3 109 1 3141 233 108 81 chr21 25216698 25217174 -9690396 - L1MC4a LINE L1 -723 7085 6623 2317 108 0 0 chr21 25217174 25217470 -9690100 + AluSx SINE Alu 1 296 -16 3141 233 108 81 chr21 25217470 25218714 -9688856 - L1MC4a LINE L1 -1185 6623 5319 266 240 5 5 chr21 25218732 25218820 -9688750 - L1 LINE L1 -861 5285 5198 1371 165 93 21 chr21 25218837 25218870 -9688700 - AluJb SINE Alu 0 312 283 210 37 0 0 chr21 25218870 25218897 -9688673 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1371 165 93 21 chr21 25218897 25219154 -9688416 - AluJb SINE Alu -29 283 1 2312 96 3 16 chr21 25219158 25219472 -9688098 - AluSq SINE Alu -3 310 1 1254 227 139 89 chr21 25220428 25221092 -9686478 - MER21B LTR ERV1 -158 705 9 1861 146 59 22 chr21 25221097 25221197 -9686373 + L1MC3 LINE L1 7345 7440 -345 1952 174 47 43 chr21 25221197 25221640 -9685930 + MER65A LTR ERV1 1 445 0 1861 146 59 22 chr21 25221640 25221944 -9685626 + L1MC3 LINE L1 7440 7764 -21 1777 161 14 3 chr21 25221983 25222274 -9685296 + AluJb SINE Alu 18 311 -1 704 209 31 0 chr21 25222292 25222421 -9685149 + FLAM_A SINE Alu 1 133 0 2108 132 0 3 chr21 25222848 25223151 -9684419 + AluSx SINE Alu 1 302 -10 683 155 8 23 chr21 25223211 25223340 -9684230 + MLT1C LTR MaLR 1 127 -340 474 200 48 40 chr21 25223887 25224012 -9683558 + L1MC/D LINE L1 5632 5757 -2051 2294 88 3 7 chr21 25224066 25224372 -9683198 + AluSg SINE Alu 1 305 -5 2128 134 7 0 chr21 25225243 25225550 -9682020 + AluSx SINE Alu 1 309 -3 1993 158 13 7 chr21 25225978 25226288 -9681282 + AluJb SINE Alu 1 312 0 2128 85 21 21 chr21 25226357 25226663 -9680907 - AluSc SINE Alu 0 306 1 474 301 60 12 chr21 25226910 25227076 -9680494 + MIR SINE MIR 85 258 -4 263 311 78 19 chr21 25227105 25227208 -9680362 + MIR3 SINE MIR 93 201 -7 2093 118 7 0 chr21 25227355 25227644 -9679926 + AluSx SINE Alu 1 291 -21 943 212 30 58 chr21 25227646 25227956 -9679614 - MLT1C LTR MaLR -33 434 147 1347 215 15 82 chr21 25227956 25228347 -9679223 - MLT1A1 LTR MaLR 0 365 1 943 212 30 58 chr21 25228347 25228384 -9679186 - MLT1C LTR MaLR -320 147 110 300 111 0 0 chr21 25228391 25228436 -9679134 + (TCC)n Simple_repeat Simple_repeat 3 47 0 1073 173 0 0 chr21 25228438 25228606 -9678964 - FRAM SINE Alu -10 166 1 424 210 20 30 chr21 25228610 25228710 -9678860 - MLT1C LTR MaLR -391 114 16 331 214 7 93 chr21 25228906 25229003 -9678567 - L2 LINE L2 -71 3242 3159 1938 158 0 3 chr21 25229003 25229294 -9678276 + AluJb SINE Alu 1 290 -22 331 214 7 93 chr21 25229294 25229336 -9678234 - L2 LINE L2 -154 3159 3115 334 249 141 92 chr21 25229318 25229644 -9677926 - L2 LINE L2 -142 3171 2830 1258 148 0 0 chr21 25229723 25229905 -9677665 - AluSp SINE Alu 0 313 132 2553 83 3 0 chr21 25229910 25230222 -9677348 - AluSp SINE Alu 0 313 1 2487 197 50 6 chr21 25230284 25230823 -9676747 + L1MB3 LINE L1 5621 6183 0 2217 139 0 0 chr21 25230842 25231152 -9676418 + AluSx SINE Alu 1 310 -2 971 184 29 0 chr21 25231956 25232162 -9675408 - L1MC3 LINE L1 -655 7130 6919 2032 141 0 31 chr21 25232268 25232588 -9674982 - AluSx SINE Alu -2 310 1 2228 129 0 0 chr21 25232625 25232935 -9674635 - AluSg SINE Alu 0 310 1 350 274 39 48 chr21 25232947 25233094 -9674476 + MIR SINE MIR 54 202 -60 1538 138 35 0 chr21 25233110 25233371 -9674199 + L1MB4 LINE L1 5910 6179 -1 950 180 0 45 chr21 25233736 25233914 -9673656 - FRAM SINE Alu -6 170 1 1240 142 0 0 chr21 25234014 25234183 -9673387 + AluJb SINE Alu 135 303 -9 31 0 0 0 chr21 25234240 25234271 -9673299 + AT_rich Low_complexity Low_complexity 1 31 0 1674 165 4 4 chr21 25234281 25234560 -9673010 - AluJb SINE Alu -33 279 1 2405 76 0 13 chr21 25234769 25235073 -9672497 - AluSq SINE Alu -8 305 6 2227 99 3 13 chr21 25235090 25235392 -9672178 - AluSx SINE Alu -13 299 1 21 0 0 0 chr21 25236495 25236516 -9671054 + GC_rich Low_complexity Low_complexity 1 21 0 2471 84 0 0 chr21 25237247 25237555 -9670015 - AluSx SINE Alu -4 308 1 2445 82 3 0 chr21 25238322 25238627 -9668943 + AluSx SINE Alu 1 306 -6 2170 105 7 13 chr21 25240058 25240364 -9667206 + AluSx SINE Alu 1 304 -8 2044 82 3 67 chr21 25240839 25241154 -9666416 - AluSq SINE Alu -18 295 1 2136 40 135 4 chr21 25241531 25241805 -9665765 + AluY SINE Alu 1 310 -1 2124 101 3 11 chr21 25242059 25242390 -9665180 - AluSx SINE Alu 0 329 1 1317 86 0 0 chr21 25242713 25242875 -9664695 - AluSg/x SINE Alu -11 299 138 271 197 0 16 chr21 25242894 25242955 -9664615 - AluSp SINE Alu -106 197 138 183 329 110 41 chr21 25243089 25243235 -9664335 + L2 LINE L2 3096 3251 -21 2422 75 0 7 chr21 25243887 25244180 -9663390 + AluSq SINE Alu 5 295 -18 213 139 0 0 chr21 25244354 25244397 -9663173 + (TCTCTG)n Simple_repeat Simple_repeat 4 46 0 1655 191 14 7 chr21 25244583 25244877 -9662693 - AluJo SINE Alu -16 296 1 405 277 84 0 chr21 25244881 25245000 -9662570 - MER5B DNA MER1_type 0 178 50 2202 114 3 22 chr21 25245002 25245319 -9662251 - AluSx SINE Alu -1 311 1 265 216 27 0 chr21 25245410 25245484 -9662086 - L1MC4 LINE L1 0 8042 7967 1642 161 37 18 chr21 25245557 25245859 -9661711 - AluJb SINE Alu 0 311 5 1078 163 33 0 chr21 25246006 25246190 -9661380 - MER20 DNA MER1_type 0 219 30 1902 159 10 3 chr21 25246405 25246700 -9660870 + AluJo SINE Alu 6 302 -10 2168 125 10 0 chr21 25246723 25247020 -9660550 + AluSx SINE Alu 1 300 -12 2214 104 0 3 chr21 25248555 25248843 -9658727 - AluSq SINE Alu -26 287 1 30 27 0 0 chr21 25248843 25248880 -9658690 + AT_rich Low_complexity Low_complexity 1 37 0 1870 70 4 0 chr21 25248914 25249144 -9658426 + AluSp SINE Alu 83 313 0 24 0 0 0 chr21 25249304 25249328 -9658242 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr21 25249593 25249638 -9657932 + AT_rich Low_complexity Low_complexity 1 45 0 1441 170 16 77 chr21 25249643 25249816 -9657754 - AluJo SINE Alu -9 303 158 2231 108 3 0 chr21 25249816 25250104 -9657466 - AluSq SINE Alu -24 289 1 1441 170 16 77 chr21 25250104 25250253 -9657317 - AluJo SINE Alu -154 158 1 28 0 0 0 chr21 25250507 25250535 -9657035 + AT_rich Low_complexity Low_complexity 1 28 0 1881 133 14 7 chr21 25250851 25251136 -9656434 + AluJb SINE Alu 2 288 -24 367 215 52 58 chr21 25251377 25251411 -9656159 - Charlie7 DNA MER1_type -17 2595 2562 1715 182 7 3 chr21 25251411 25251713 -9655857 + AluJo SINE Alu 1 303 -9 367 215 52 58 chr21 25251713 25251756 -9655814 - Charlie7 DNA MER1_type -50 2562 2520 459 128 0 13 chr21 25251756 25251834 -9655736 + MER116 DNA Mariner 1 77 -3 367 215 52 58 chr21 25251834 25251908 -9655662 - Charlie7 DNA MER1_type -92 2520 2442 775 110 119 0 chr21 25251908 25252026 -9655544 + FLAM_C SINE Alu 2 133 0 367 215 52 58 chr21 25252026 25252044 -9655526 - Charlie7 DNA MER1_type -170 2442 2425 3486 111 6 8 chr21 25252052 25252564 -9655006 - L1PA13 LINE L1 -4 6159 5649 5125 136 21 33 chr21 25252564 25252865 -9654705 - L1PA14 LINE L1 -31 6130 5827 2444 61 10 7 chr21 25252865 25253162 -9654408 - AluY SINE Alu -13 298 1 5125 136 21 33 chr21 25253162 25253442 -9654128 - L1PA14 LINE L1 -334 5827 5545 252 0 0 0 chr21 25253442 25253470 -9654100 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 5125 136 21 33 chr21 25253470 25253847 -9653723 - L1PA14 LINE L1 -616 5545 5165 2277 133 0 0 chr21 25253847 25254155 -9653415 - AluSx SINE Alu -4 308 1 5125 136 21 33 chr21 25254155 25254706 -9652864 - L1PA14 LINE L1 -996 5165 4592 2432 75 0 0 chr21 25254706 25255001 -9652569 + AluY SINE Alu 1 295 -16 5125 136 21 33 chr21 25255001 25255445 -9652125 - L1PA14 LINE L1 -1569 4592 4144 486 238 116 14 chr21 25255542 25255689 -9651881 - Charlie7 DNA MER1_type -405 2207 2046 2008 136 13 25 chr21 25255715 25256032 -9651538 - AluSq SINE Alu 0 313 1 1081 192 10 5 chr21 25256052 25256255 -9651315 - AluJo SINE Alu -76 236 33 352 295 81 0 chr21 25256396 25256545 -9651025 + Charlie8 DNA MER1_type 117 277 -2140 2458 221 35 27 chr21 25256556 25257193 -9650377 - Charlie7 DNA MER1_type -1201 1411 770 674 242 65 14 chr21 25257238 25257453 -9650117 - Charlie7 DNA MER1_type -1981 631 406 1592 168 53 11 chr21 25257453 25257630 -9649940 - AluJo SINE Alu -7 305 110 312 27 0 0 chr21 25257630 25257667 -9649903 + (TG)n Simple_repeat Simple_repeat 2 38 0 1592 168 53 11 chr21 25257667 25257774 -9649796 - AluJo SINE Alu -202 110 9 1211 143 58 88 chr21 25257802 25257836 -9649734 - L1MB7 LINE L1 -19 6165 6131 2233 103 3 0 chr21 25257836 25258126 -9649444 - AluSp SINE Alu -22 291 1 1211 143 58 88 chr21 25258126 25258156 -9649414 - L1MB7 LINE L1 -53 6131 6102 2016 144 0 13 chr21 25258156 25258461 -9649109 + AluJb SINE Alu 1 301 -11 1211 143 58 88 chr21 25258461 25258689 -9648881 - L1MB7 LINE L1 -82 6102 5881 23 68 0 0 chr21 25258689 25258733 -9648837 + AT_rich Low_complexity Low_complexity 1 44 0 220 68 23 23 chr21 25259470 25259514 -9648056 + (TTTTA)n Simple_repeat Simple_repeat 2 45 0 2879 55 13 31 chr21 25259530 25259748 -9647822 - THE1C LTR MaLR -1 374 163 2286 89 4 0 chr21 25259748 25260054 -9647516 + AluSp SINE Alu 1 307 0 2879 55 13 31 chr21 25260054 25260215 -9647355 - THE1C LTR MaLR -212 163 1 686 231 7 0 chr21 25260215 25260358 -9647212 - AluJb SINE Alu -32 280 137 1054 262 107 5 chr21 25260366 25260809 -9646761 - L1ME3A LINE L1 -5 6165 5666 678 127 45 13 chr21 25260832 25260989 -9646581 + CT-rich Low_complexity Low_complexity 3 164 0 2201 124 0 3 chr21 25260991 25261298 -9646272 - AluJb SINE Alu -6 306 1 1216 115 0 0 chr21 25261651 25261807 -9645763 - AluSg/x SINE Alu -23 287 132 2034 150 0 7 chr21 25261807 25262113 -9645457 - AluSx SINE Alu -8 304 1 1753 165 11 3 chr21 25262522 25262807 -9644763 - AluJo SINE Alu -24 288 2 353 127 124 44 chr21 25263156 25263248 -9644322 + L1ME1 LINE L1 5376 5474 -821 27 0 0 0 chr21 25263248 25263275 -9644295 + AT_rich Low_complexity Low_complexity 1 27 0 1892 152 28 22 chr21 25263275 25263638 -9643932 - L1MA7 LINE L1 -2 6289 5925 391 86 27 21 chr21 25263638 25263714 -9643856 - MLT2A1 LTR ERVL 0 453 397 602 135 42 23 chr21 25263719 25264017 -9643553 + (TA)n Simple_repeat Simple_repeat 1 303 0 3154 81 0 5 chr21 25264017 25264423 -9643147 - MLT2A1 LTR ERVL -40 404 1 1733 164 12 43 chr21 25264423 25264496 -9643074 - L1MA7 LINE L1 -362 5929 5855 2034 86 72 7 chr21 25264496 25264774 -9642796 - AluSq SINE Alu -17 296 1 1733 164 12 43 chr21 25264774 25265023 -9642547 - L1MA7 LINE L1 -436 5855 5617 1960 127 7 38 chr21 25265023 25265352 -9642218 - AluSx SINE Alu 0 320 1 2784 229 4 41 chr21 25265367 25265493 -9642077 + L1ME1 LINE L1 5485 5614 -552 1527 154 67 32 chr21 25265493 25265612 -9641958 + AluJb SINE Alu 3 116 -196 2422 81 0 3 chr21 25265612 25265910 -9641660 - AluSc SINE Alu -12 297 1 1527 154 67 32 chr21 25265910 25266075 -9641495 + AluJb SINE Alu 116 297 -15 2784 229 4 41 chr21 25266075 25266395 -9641175 + L1ME1 LINE L1 5614 5898 -268 2276 98 0 22 chr21 25266395 25266712 -9640858 - AluSg SINE Alu 0 310 1 2784 229 4 41 chr21 25266712 25266966 -9640604 + L1ME1 LINE L1 5898 6160 -6 924 206 49 45 chr21 25267648 25267934 -9639636 - L1ME3A LINE L1 -8 6162 5876 800 212 19 24 chr21 25267953 25268165 -9639405 - L1ME3A LINE L1 -369 5801 5591 1872 131 21 7 chr21 25268562 25268844 -9638726 - AluJb SINE Alu 0 312 27 820 111 41 6 chr21 25269510 25269682 -9637888 + CT-rich Low_complexity Low_complexity 2 179 0 1556 151 14 58 chr21 25269703 25269995 -9637575 - AluJo SINE Alu -33 279 1 1881 148 40 0 chr21 25270411 25270689 -9636881 + AluJb SINE Alu 1 289 -23 975 177 23 14 chr21 25270913 25271128 -9636442 - L1MB8 LINE L1 0 6178 5962 1423 88 0 22 chr21 25271133 25271314 -9636256 + AluSq SINE Alu 1 177 -136 2197 101 11 11 chr21 25271968 25272255 -9635315 + AluSx SINE Alu 1 287 -25 2085 141 0 7 chr21 25272799 25273133 -9634437 - AluJb SINE Alu 0 312 1 2420 95 0 0 chr21 25273306 25273610 -9633960 + AluSx SINE Alu 1 304 -8 459 276 0 16 chr21 25274662 25274785 -9632785 - L2 LINE L2 -6 3266 3146 510 112 0 0 chr21 25275008 25275088 -9632482 - AluS SINE Alu -5 306 227 689 155 0 0 chr21 25275381 25275484 -9632086 + U6 snRNA snRNA 2 104 -3 1187 156 4 44 chr21 25275941 25276166 -9631404 + AluJo SINE Alu 86 301 -11 1494 247 75 11 chr21 25276387 25276853 -9630717 + L1PBa LINE L1 6 501 -6362 2247 158 52 7 chr21 25276914 25277333 -9630237 + L1PBa LINE L1 605 1042 -5821 10868 203 19 20 chr21 25277334 25279908 -9627662 + L1PBa LINE L1 1086 3661 -3201 189 0 0 0 chr21 25279908 25279929 -9627641 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 10868 203 19 20 chr21 25279929 25280641 -9626929 + L1PBa LINE L1 3661 4372 -2490 2143 120 3 10 chr21 25280641 25280942 -9626628 + AluSq SINE Alu 1 299 -14 10868 203 19 20 chr21 25280942 25281230 -9626340 + L1PBa LINE L1 4372 4659 -2203 2319 102 16 0 chr21 25281230 25281534 -9626036 + AluSg SINE Alu 1 309 -1 10868 203 19 20 chr21 25281534 25281870 -9625700 + L1PBa LINE L1 4659 5200 -1662 2223 112 0 3 chr21 25281874 25282192 -9625378 + AluSx SINE Alu 1 317 0 3823 95 13 43 chr21 25282192 25282792 -9624778 + L1PB1 LINE L1 5256 5837 -314 2306 99 0 7 chr21 25282796 25283119 -9624451 + AluSg SINE Alu 1 310 0 790 179 62 31 chr21 25283199 25283361 -9624209 - FRAM SINE Alu 0 40 1 311 307 114 17 chr21 25283619 25283934 -9623636 + L1ME4a LINE L1 5470 5814 -505 454 267 62 0 chr21 25284009 25284170 -9623400 + L1ME4a LINE L1 5943 6113 -8 22 35 0 0 chr21 25284176 25284205 -9623365 + AT_rich Low_complexity Low_complexity 1 29 0 1750 88 0 0 chr21 25284365 25284582 -9622988 - AluSq SINE Alu -14 299 83 2155 117 52 23 chr21 25286255 25286598 -9620972 + THE1B LTR MaLR 1 353 -11 21 0 0 0 chr21 25286808 25286829 -9620741 + AT_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr21 25287073 25287106 -9620464 + (TCCA)n Simple_repeat Simple_repeat 4 36 0 1565 89 0 0 chr21 25287241 25287432 -9620138 - AluSg SINE Alu -119 191 1 246 81 0 27 chr21 25287432 25287462 -9620108 + THE1B LTR MaLR 387 417 -11 698 263 60 9 chr21 25287553 25287770 -9619800 + MLT1D LTR MaLR 278 505 0 487 244 15 22 chr21 25287943 25288078 -9619492 - MIR3 SINE MIR -67 141 8 1883 144 55 33 chr21 25288969 25289336 -9618234 - THE1C LTR MaLR 0 375 1 2378 87 3 0 chr21 25289580 25289878 -9617692 - AluSp SINE Alu -14 299 1 24 0 0 0 chr21 25290891 25290915 -9616655 + AT_rich Low_complexity Low_complexity 1 24 0 1132 160 61 38 chr21 25291708 25291921 -9615649 + AluJo SINE Alu 86 303 -9 1648 146 92 16 chr21 25292439 25292755 -9614815 + Charlie1b DNA MER1_type 1 340 -183 30 45 0 0 chr21 25292871 25292915 -9614655 + AT_rich Low_complexity Low_complexity 1 44 0 346 213 43 43 chr21 25292915 25293009 -9614561 + Charlie1b DNA MER1_type 429 522 -1 412 273 23 16 chr21 25293431 25293559 -9614011 + MER5B DNA MER1_type 2 130 -48 1544 226 34 29 chr21 25293564 25293975 -9613595 - L1ME3 LINE L1 -2 6160 5748 2194 113 0 41 chr21 25293998 25294316 -9613254 - AluSx SINE Alu -7 305 1 515 262 52 61 chr21 25294461 25295036 -9612534 + L2 LINE L2 2657 3300 -13 1465 91 0 29 chr21 25295752 25295989 -9611581 + AluY SINE Alu 106 311 0 22 0 0 0 chr21 25296690 25296712 -9610858 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr21 25296823 25296867 -9610703 + (TG)n Simple_repeat Simple_repeat 2 45 0 1095 129 0 0 chr21 25296867 25297014 -9610556 - AluSq SINE Alu -22 291 145 738 269 69 39 chr21 25297322 25297857 -9609713 - HAL1 LINE L1 0 2507 1916 1005 191 77 0 chr21 25297862 25298056 -9609514 - AluJo SINE Alu -14 298 90 1695 260 84 40 chr21 25298157 25298933 -9608637 - HAL1 LINE L1 -1349 1158 349 386 278 97 14 chr21 25299986 25300130 -9607440 - MIR SINE MIR -19 243 88 413 224 108 65 chr21 25300377 25300591 -9606979 + L2 LINE L2 3077 3299 -14 2145 81 25 0 chr21 25300626 25300911 -9606659 - AluSp SINE Alu -21 292 1 336 267 10 10 chr21 25301013 25301114 -9606456 - MIR SINE MIR -3 259 159 354 275 92 23 chr21 25301126 25301257 -9606313 + MIR SINE MIR 37 176 -86 339 246 45 55 chr21 25301280 25301390 -9606180 - MIR SINE MIR -106 156 48 211 221 59 20 chr21 25301616 25301700 -9605870 + MIR SINE MIR 76 157 -51 233 275 111 58 chr21 25301835 25302042 -9605528 + L2 LINE L2 2962 3179 -93 198 71 0 0 chr21 25303141 25303169 -9604401 + (CGG)n Simple_repeat Simple_repeat 1 28 0 982 280 36 40 chr21 25304949 25305449 -9602121 - L1ME3A LINE L1 -209 5961 5464 509 254 62 5 chr21 25306034 25306227 -9601343 - L1ME3A LINE L1 -254 5916 5713 681 246 66 60 chr21 25306268 25306546 -9601024 + Charlie2 DNA MER1_type 7 289 -2493 2305 77 30 0 chr21 25306546 25306846 -9600724 - AluSq SINE Alu -4 309 1 681 246 66 60 chr21 25306846 25306900 -9600670 + Charlie2 DNA MER1_type 289 341 -2441 549 205 58 6 chr21 25307009 25307180 -9600390 + Charlie2 DNA MER1_type 2667 2846 -16 748 246 26 91 chr21 25307272 25307622 -9599948 - L1ME3A LINE L1 -2167 5641 5315 466 290 48 19 chr21 25307402 25307671 -9599899 - L1PA8A LINE L1 -589 5542 5266 354 314 13 41 chr21 25307789 25308107 -9599463 - L1ME3A LINE L1 -1091 5055 4747 304 259 48 20 chr21 25308468 25308615 -9598955 - L1ME3A LINE L1 -1810 4336 4186 304 293 61 67 chr21 25308704 25308868 -9598702 - L1ME3A LINE L1 -2029 4117 3955 248 286 71 7 chr21 25309177 25309331 -9598239 - L1ME3A LINE L1 -2565 3581 3418 1975 93 16 39 chr21 25309369 25309680 -9597890 - AluSx SINE Alu 0 312 9 542 269 82 14 chr21 25309696 25309904 -9597666 - L1ME3A LINE L1 -2805 3341 3120 438 289 118 53 chr21 25310073 25310395 -9597175 - L1ME3A LINE L1 -3224 2922 2580 246 250 40 26 chr21 25310615 25310767 -9596803 - L1ME3A LINE L1 -3823 2323 2170 2435 92 0 0 chr21 25310970 25311276 -9596294 - AluSc SINE Alu -3 306 1 431 300 65 78 chr21 25311401 25311726 -9595844 - L1M3c LINE L1 -4516 1625 1306 2473 53 0 3 chr21 25311726 25312025 -9595545 - AluY SINE Alu -13 298 1 431 300 65 78 chr21 25312025 25312132 -9595438 - L1M3c LINE L1 -4835 1306 1199 27 81 0 0 chr21 25312665 25312727 -9594843 + AT_rich Low_complexity Low_complexity 1 62 0 423 325 71 73 chr21 25313257 25313724 -9593846 - L2 LINE L2 -649 2665 2200 228 318 37 0 chr21 25313869 25313976 -9593594 - MER113 DNA MER1_type? -410 111 1 478 247 154 11 chr21 25314045 25314227 -9593343 - L2 LINE L2 -1195 2119 1912 905 207 89 29 chr21 25314297 25314543 -9593027 - MIR SINE MIR 0 262 2 2368 76 0 7 chr21 25314570 25314893 -9592677 + AluSg SINE Alu 1 310 0 272 388 0 0 chr21 25315248 25315351 -9592219 - L2 LINE L2 -1405 1909 1807 241 259 108 80 chr21 25315323 25315674 -9591896 - L2 LINE L2 -2335 979 619 482 236 64 25 chr21 25315784 25315941 -9591629 + MIR SINE MIR 73 235 -27 260 200 0 20 chr21 25316743 25316793 -9590777 - L2 LINE L2 -1 3271 3223 21 36 0 0 chr21 25318021 25318049 -9589521 + AT_rich Low_complexity Low_complexity 1 28 0 2021 98 0 11 chr21 25319381 25319658 -9587912 - AluSx SINE Alu -25 287 14 1399 124 0 5 chr21 25319662 25319856 -9587714 + AluSg/x SINE Alu 102 294 -16 2167 105 0 7 chr21 25321414 25321739 -9585831 - AluY SINE Alu 0 311 1 236 364 43 37 chr21 25322359 25322521 -9585049 - MIR SINE MIR -79 183 21 24 32 0 0 chr21 25322760 25322791 -9584779 + AT_rich Low_complexity Low_complexity 1 31 0 1174 137 87 27 chr21 25322879 25322963 -9584607 + MER46A DNA MER2_type 4 82 -2649 2222 88 3 25 chr21 25322963 25323280 -9584290 + AluSq SINE Alu 2 311 -2 1174 137 87 27 chr21 25323280 25323414 -9584156 + MER46A DNA MER2_type 82 235 -1 21 0 0 0 chr21 25323972 25323993 -9583577 + AT_rich Low_complexity Low_complexity 1 21 0 1655 183 21 7 chr21 25324724 25325008 -9582562 + AluJo SINE Alu 1 288 -24 260 135 0 19 chr21 25325010 25325062 -9582508 + (TG)n Simple_repeat Simple_repeat 2 52 0 268 260 151 27 chr21 25326161 25326307 -9581263 - MIR SINE MIR -51 211 48 435 199 23 23 chr21 25327770 25327901 -9579669 - L1ME4a LINE L1 -1 6120 5990 807 265 60 0 chr21 25329130 25329345 -9578225 - MIR SINE MIR -25 237 10 984 245 119 29 chr21 25329407 25329848 -9577722 + L1ME LINE L1 5366 5847 -346 315 0 0 0 chr21 25331230 25331265 -9576305 + (TG)n Simple_repeat Simple_repeat 2 36 0 308 155 127 0 chr21 25331530 25331601 -9575969 - MER116 DNA Mariner 0 80 1 227 162 40 40 chr21 25331772 25331871 -9575699 + (TTATA)n Simple_repeat Simple_repeat 3 101 0 463 95 81 0 chr21 25332433 25332507 -9575063 - MADE1 DNA Mariner 0 80 1 2057 142 0 3 chr21 25332597 25332892 -9574678 + AluSx SINE Alu 1 294 -18 1072 306 81 32 chr21 25333727 25334190 -9573380 - L2 LINE L2 -495 2819 2317 1531 119 31 60 chr21 25334190 25334509 -9573061 + AluSx SINE Alu 1 310 -2 1072 306 81 32 chr21 25334509 25334659 -9572911 - L2 LINE L2 -997 2317 2176 771 205 99 0 chr21 25334659 25334820 -9572750 - MER5B DNA MER1_type -1 177 1 267 274 115 75 chr21 25334840 25335187 -9572383 - L2 LINE L2 -1211 2103 1743 577 213 132 36 chr21 25335419 25335703 -9571867 - L1ME3A LINE L1 -22 6148 5831 1344 246 89 13 chr21 25335718 25336495 -9571075 - L1ME3A LINE L1 -372 5798 4922 1748 150 10 39 chr21 25336495 25336801 -9570769 + AluJb SINE Alu 1 297 -15 1344 246 89 13 chr21 25336801 25337048 -9570522 - L1ME3A LINE L1 -1248 4922 4695 191 273 132 80 chr21 25337129 25337378 -9570192 - L2 LINE L2 -2342 972 711 308 286 79 51 chr21 25337417 25337595 -9569975 - MIR SINE MIR -61 201 19 2241 104 0 3 chr21 25337706 25338003 -9569567 + AluSg SINE Alu 1 296 -14 391 167 40 71 chr21 25338034 25338160 -9569410 + L1ME4a LINE L1 5979 6100 -21 21 0 0 0 chr21 25338165 25338186 -9569384 + AT_rich Low_complexity Low_complexity 1 21 0 41189 39 8 3 chr21 25338979 25345119 -9562451 + L1PA4 LINE L1 2 6168 0 336 283 86 35 chr21 25345169 25345367 -9562203 + L1MC/D LINE L1 5358 5565 -599 287 183 56 0 chr21 25345456 25345527 -9562043 + L1MC/D LINE L1 5681 5755 -2053 1097 283 46 47 chr21 25345560 25346100 -9561470 + L2 LINE L2 2777 3311 -2 27 0 0 0 chr21 25346403 25346430 -9561140 + AT_rich Low_complexity Low_complexity 1 27 0 1793 142 30 17 chr21 25346444 25346746 -9560824 + AluSx SINE Alu 2 307 -5 24 67 0 0 chr21 25346936 25346981 -9560589 + AT_rich Low_complexity Low_complexity 1 45 0 295 291 26 26 chr21 25347032 25347149 -9560421 - MER5A DNA MER1_type -28 161 45 395 294 28 0 chr21 25347163 25347272 -9560298 - MIR3 SINE MIR -35 173 62 194 234 188 16 chr21 25347347 25347411 -9560159 + L2 LINE L2 3239 3313 0 1252 174 73 5 chr21 25347536 25347755 -9559815 + AluJo SINE Alu 15 248 -64 246 62 0 0 chr21 25347755 25347787 -9559783 + (A)n Simple_repeat Simple_repeat 1 32 0 3713 216 68 18 chr21 25348683 25349747 -9557823 - L1MEc LINE L1 -5243 1153 37 361 0 41 0 chr21 25352322 25352371 -9555199 + (TA)n Simple_repeat Simple_repeat 1 51 0 315 42 0 62 chr21 25353293 25353341 -9554229 - MADE1 DNA Mariner -35 45 1 2037 112 0 32 chr21 25353651 25353963 -9553607 - AluSx SINE Alu -10 302 1 2174 117 3 3 chr21 25354024 25354333 -9553237 - AluSx SINE Alu -3 309 1 33 43 0 0 chr21 25355526 25355573 -9551997 + AT_rich Low_complexity Low_complexity 1 47 0 221 300 50 0 chr21 25355724 25355784 -9551786 - L2 LINE L2 -14 3258 3196 353 194 45 0 chr21 25356496 25356563 -9551007 - MER106A DNA MER1_type -166 70 1 1828 183 6 42 chr21 25356563 25356765 -9550805 - MLT1A1 LTR MaLR -18 347 162 2162 136 0 0 chr21 25356765 25357075 -9550495 - AluSx SINE Alu -2 310 1 1828 183 6 42 chr21 25357075 25357232 -9550338 - MLT1A1 LTR MaLR -203 162 1 237 188 0 112 chr21 25357925 25358005 -9549565 - MIR3 SINE MIR -53 155 85 28 29 0 0 chr21 25358728 25358763 -9548807 + AT_rich Low_complexity Low_complexity 1 35 0 1471 173 3 50 chr21 25359554 25359854 -9547716 - AluJo SINE Alu -13 299 14 25 0 0 0 chr21 25360309 25360334 -9547236 + AT_rich Low_complexity Low_complexity 1 25 0 286 317 58 0 chr21 25360379 25360483 -9547087 + MIR SINE MIR 153 262 0 223 304 14 0 chr21 25360662 25360731 -9546839 + CT-rich Low_complexity Low_complexity 2 71 0 240 254 0 0 chr21 25360845 25360904 -9546666 - L1MC/D LINE L1 -2175 5633 5575 2006 230 66 80 chr21 25360956 25361776 -9545794 + MER21B LTR ERV1 1 808 -55 2114 101 63 0 chr21 25362248 25362534 -9545036 - AluSx SINE Alu -8 304 1 644 152 98 68 chr21 25362791 25362923 -9544647 - AluJo SINE Alu -176 136 1 480 192 96 0 chr21 25363687 25363791 -9543779 + FLAM_A SINE Alu 1 114 -19 2134 93 7 7 chr21 25364091 25364381 -9543189 + AluSc SINE Alu 1 290 -19 15025 115 40 13 chr21 25365735 25367834 -9539736 + Tigger1 DNA MER2_type 1 2173 -245 900 54 8 31 chr21 25367834 25367963 -9539607 + L1PA7 LINE L1 6026 6151 -3 15025 115 40 13 chr21 25367963 25368215 -9539355 + Tigger1 DNA MER2_type 2173 2417 -1 24 0 0 0 chr21 25370380 25370404 -9537166 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 25370923 25370954 -9536616 + AT_rich Low_complexity Low_complexity 1 31 0 2020 127 7 3 chr21 25371412 25371696 -9535874 + AluSx SINE Alu 3 287 -25 13405 39 9 7 chr21 25371707 25374178 -9533392 + L1PA5 LINE L1 3672 6141 -13 731 304 49 12 chr21 25374725 25374968 -9532602 - MIR SINE MIR -8 254 3 3139 159 82 101 chr21 25375210 25375534 -9532036 + L1MB7 LINE L1 5276 5605 -579 2164 153 102 2 chr21 25375534 25375927 -9531643 - MSTB1 LTR MaLR 0 432 1 3139 159 82 101 chr21 25375927 25376091 -9531479 + L1MB7 LINE L1 5605 5771 -413 564 156 0 0 chr21 25376091 25376181 -9531389 + AluJb SINE Alu 202 291 -21 1877 144 35 0 chr21 25376182 25376466 -9531104 + AluJb SINE Alu 1 294 -18 3139 159 82 101 chr21 25376466 25376804 -9530766 + L1MB7 LINE L1 5770 6176 -8 2236 89 10 3 chr21 25377667 25377960 -9529610 - AluSc SINE Alu -14 295 1 24 53 0 0 chr21 25378672 25378710 -9528860 + AT_rich Low_complexity Low_complexity 1 38 0 790 192 26 19 chr21 25378767 25378923 -9528647 - FRAM SINE Alu -9 157 1 422 315 92 11 chr21 25379633 25379817 -9527753 - MLT1I LTR MaLR -117 292 94 2465 47 27 3 chr21 25382316 25382615 -9524955 - AluY SINE Alu -5 306 1 542 161 18 54 chr21 25383356 25383468 -9524102 + FLAM_A SINE Alu 26 133 -9 2341 54 0 0 chr21 25384625 25384931 -9522639 - AluY SINE Alu 0 308 3 207 162 0 0 chr21 25385220 25385257 -9522313 + GA-rich Low_complexity Low_complexity 4 40 0 1767 174 3 3 chr21 25385977 25386275 -9521295 - AluJo SINE Alu -14 298 1 249 317 28 35 chr21 25388795 25388940 -9518630 + L2 LINE L2 2565 2708 -606 263 285 96 77 chr21 25389039 25389414 -9518156 + L2 LINE L2 2866 3247 -25 22 0 0 0 chr21 25390409 25390431 -9517139 + AT_rich Low_complexity Low_complexity 1 22 0 1643 165 57 4 chr21 25391216 25391495 -9516075 - AluJo SINE Alu -13 299 6 259 200 0 0 chr21 25392228 25392278 -9515292 - L2 LINE L2 -3 3310 3261 2236 138 34 3 chr21 25392664 25393018 -9514552 - MLT1A1 LTR MaLR 0 365 1 865 237 32 40 chr21 25393018 25393260 -9514310 - MIR SINE MIR -9 253 12 2179 111 3 0 chr21 25393300 25393589 -9513981 - AluSp SINE Alu -23 290 1 2120 121 3 0 chr21 25394280 25394577 -9512993 - AluSx SINE Alu -14 298 1 31 0 0 0 chr21 25397791 25397822 -9509748 + AT_rich Low_complexity Low_complexity 1 31 0 240 160 40 0 chr21 25397822 25397872 -9509698 - Alu SINE Alu 0 302 251 393 296 66 19 chr21 25397976 25398189 -9509381 + L1M4 LINE L1 3826 4048 -2098 1407 197 70 54 chr21 25398626 25399109 -9508461 - MLT1F LTR MaLR -3 539 40 1557 88 10 0 chr21 25399289 25399483 -9508087 + AluSg/x SINE Alu 86 281 -29 2221 105 7 3 chr21 25399507 25399811 -9507759 + AluSg SINE Alu 1 305 -5 266 193 24 36 chr21 25400042 25400125 -9507445 + (CATATA)n Simple_repeat Simple_repeat 2 83 0 353 240 19 10 chr21 25400206 25400310 -9507260 + L1P LINE L1 5283 5387 -764 368 241 109 40 chr21 25400469 25400643 -9506927 + L1MC4a LINE L1 5709 5894 -1914 363 336 22 18 chr21 25400857 25401083 -9506487 - L1MC4a LINE L1 -1888 5920 5694 621 288 18 6 chr21 25403004 25403174 -9504396 + MIR SINE MIR 2 173 -89 2426 73 0 29 chr21 25404913 25405226 -9502344 + AluY SINE Alu 1 304 -7 2277 102 0 29 chr21 25405245 25405560 -9502010 + AluSq SINE Alu 1 306 -7 2003 101 42 3 chr21 25405711 25405999 -9501571 - AluSx SINE Alu -13 299 1 725 236 0 6 chr21 25406148 25406322 -9501248 - L1MB4 LINE L1 -13 6167 5995 446 256 96 41 chr21 25406565 25406784 -9500786 - MIR SINE MIR -8 254 24 539 264 91 52 chr21 25407068 25407375 -9500195 - MLT1H LTR MaLR -196 353 35 227 330 113 9 chr21 25407541 25407656 -9499914 + L2 LINE L2 2918 3044 -228 4287 161 45 46 chr21 25407742 25408617 -9498953 - L1MB8 LINE L1 0 6178 5303 1852 175 0 13 chr21 25408617 25408926 -9498644 + AluJo SINE Alu 1 305 -7 1691 171 0 48 chr21 25408929 25409239 -9498331 + AluJb SINE Alu 1 295 -17 4287 161 45 46 chr21 25409239 25409308 -9498262 - L1MB8 LINE L1 -877 5301 5215 574 214 30 54 chr21 25409317 25409485 -9498085 - L1MB8 LINE L1 -912 5234 5071 605 217 58 0 chr21 25409614 25409734 -9497836 - FLAM_A SINE Alu -3 130 4 3443 11 0 0 chr21 25410345 25410709 -9496861 + L1PA2 LINE L1 5788 6151 -4 30 27 0 0 chr21 25410782 25410819 -9496751 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr21 25412875 25412900 -9494670 + AT_rich Low_complexity Low_complexity 1 25 0 276 265 41 51 chr21 25413140 25413238 -9494332 + MIR3 SINE MIR 111 207 -1 706 254 74 69 chr21 25413420 25413841 -9493729 - MLT1H LTR MaLR -12 537 115 2228 105 0 44 chr21 25414393 25414708 -9492862 - AluSq SINE Alu -12 301 1 207 255 0 0 chr21 25415192 25415239 -9492331 + (CGTG)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr21 25415522 25415545 -9492025 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr21 25415595 25415625 -9491945 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr21 25415724 25415760 -9491810 + AT_rich Low_complexity Low_complexity 1 36 0 42 36 0 0 chr21 25415859 25415915 -9491655 + AT_rich Low_complexity Low_complexity 1 56 0 1784 157 52 0 chr21 25416378 25416665 -9490905 - AluJb SINE Alu -10 302 1 2212 98 3 3 chr21 25419185 25419482 -9488088 - AluSg SINE Alu -13 297 1 2086 113 3 0 chr21 25419485 25419767 -9487803 - AluY SINE Alu -11 300 18 321 106 50 16 chr21 25419767 25419840 -9487730 - Alu SINE Alu -256 46 1 2304 86 20 0 chr21 25420069 25420372 -9487198 - AluSg SINE Alu -1 309 1 22 0 0 0 chr21 25421074 25421096 -9486474 + AT_rich Low_complexity Low_complexity 1 22 0 2158 93 3 35 chr21 25421517 25421827 -9485743 - AluSp SINE Alu -13 300 1 297 0 0 0 chr21 25422430 25422463 -9485107 + (TG)n Simple_repeat Simple_repeat 2 34 0 2816 182 25 6 chr21 25424127 25424638 -9482932 + Tigger7 DNA MER2_type 1 521 -1966 445 211 11 11 chr21 25424639 25424729 -9482841 + Tigger7 DNA MER2_type 2397 2486 -1 2225 129 0 0 chr21 25426165 25426475 -9481095 - AluSx SINE Alu -2 310 1 786 101 110 2 chr21 25427123 25427341 -9480229 + AluSx SINE Alu 4 294 -15 22 70 0 0 chr21 25427664 25427707 -9479863 + AT_rich Low_complexity Low_complexity 1 43 0 22 56 0 0 chr21 25432023 25432059 -9475511 + AT_rich Low_complexity Low_complexity 1 36 0 2537 57 7 0 chr21 25433602 25433903 -9473667 + AluY SINE Alu 1 303 -8 1935 153 31 21 chr21 25434034 25434360 -9473210 + MER44D DNA MER2_type 1 599 -10 198 0 0 0 chr21 25434361 25434383 -9473187 + (TG)n Simple_repeat Simple_repeat 1 22 0 2166 128 0 3 chr21 25435211 25435509 -9472061 - AluSx SINE Alu -15 297 1 1797 166 14 3 chr21 25435701 25435996 -9471574 + AluJb SINE Alu 1 298 -14 316 318 58 0 chr21 25435999 25436153 -9471417 + L1ME LINE L1 4929 5091 -1055 417 219 92 37 chr21 25436295 25436459 -9471111 + L1ME LINE L1 5260 5432 -738 1916 131 197 8 chr21 25436472 25436832 -9470738 + MSTA LTR MaLR 1 428 0 660 94 0 0 chr21 25436944 25437029 -9470541 + AluJ/FRAM SINE Alu 216 300 -12 773 170 111 0 chr21 25437083 25437236 -9470334 - MER63 DNA MER1_type -201 860 691 458 306 34 29 chr21 25439668 25439876 -9467694 - MIR SINE MIR -37 225 19 2611 138 0 7 chr21 25440040 25440446 -9467124 - MER66B LTR ERV1 0 486 84 652 153 25 94 chr21 25440454 25440656 -9466914 - L1M4 LINE L1 -871 5275 5088 700 193 9 0 chr21 25440666 25440775 -9466795 + FLAM_C SINE Alu 2 111 -32 398 136 48 19 chr21 25440796 25440899 -9466671 + GA-rich Low_complexity Low_complexity 4 109 0 394 254 31 23 chr21 25440947 25441077 -9466493 - L1M4 LINE L1 -1100 5046 4916 3527 205 62 36 chr21 25441081 25442056 -9465514 - L1M4 LINE L1 -1406 4740 3741 2806 123 27 53 chr21 25442065 25442483 -9465087 - L1MA7 LINE L1 -2 6289 5884 1684 106 201 12 chr21 25442483 25442737 -9464833 - AluSx SINE Alu 0 302 1 2806 123 27 53 chr21 25442737 25442807 -9464763 - L1MA7 LINE L1 -407 5884 5814 417 125 0 52 chr21 25442831 25442927 -9464643 + (GAAA)n Simple_repeat Simple_repeat 3 93 0 2352 96 0 3 chr21 25442932 25443234 -9464336 - AluSg1 SINE Alu -8 301 1 917 139 1 28 chr21 25443234 25443398 -9464172 - L1MA7 LINE L1 -323 5828 5673 445 66 33 0 chr21 25443408 25443469 -9464101 - L1MA7 LINE L1 -816 5475 5413 1396 171 111 46 chr21 25443469 25443749 -9463821 + AluJb SINE Alu 1 298 -4 287 196 0 0 chr21 25443749 25443795 -9463775 + AluSp SINE Alu 134 179 -124 474 188 0 0 chr21 25443933 25444029 -9463541 + C-rich Low_complexity Low_complexity 2 97 0 2259 106 0 7 chr21 25444041 25444342 -9463228 + AluSg SINE Alu 1 299 -11 1522 133 98 42 chr21 25444342 25444605 -9462965 - AluJb SINE Alu -31 281 3 434 238 10 0 chr21 25444609 25444710 -9462860 - L1M4 LINE L1 -2524 3622 3521 1165 205 47 22 chr21 25444712 25444990 -9462580 - L1M4 LINE L1 -3187 2959 2675 581 171 0 0 chr21 25444990 25445078 -9462492 + AluS SINE Alu 1 88 -225 2122 100 52 3 chr21 25445207 25445497 -9462073 - AluSx SINE Alu -8 304 1 2062 160 0 0 chr21 25445543 25445856 -9461714 + 7SLRNA srpRNA srpRNA 1 313 -7 503 164 173 93 chr21 25445867 25445969 -9461601 - MER33 DNA MER1_type -2330 255 163 2129 99 0 34 chr21 25445969 25446290 -9461280 - AluSq SINE Alu 0 311 1 503 164 173 93 chr21 25446290 25446399 -9461171 - MER33 DNA MER1_type -2422 163 25 603 227 31 90 chr21 25446557 25446813 -9460757 + MER20B DNA MER1_type 364 604 -180 1270 150 5 5 chr21 25446815 25447028 -9460542 - AluSg/x SINE Alu -16 294 82 2358 62 6 53 chr21 25447036 25447358 -9460212 - AluY SINE Alu -4 307 1 2079 133 0 19 chr21 25447502 25447811 -9459759 - AluSx SINE Alu -9 303 1 436 234 106 14 chr21 25449283 25449424 -9458146 + MIR SINE MIR 79 232 -30 4151 93 37 3 chr21 25449597 25450185 -9457385 + MER51A LTR ERV1 1 608 -26 7785 23 35 5 chr21 25451722 25453040 -9454530 - L1PA3 LINE L1 0 6155 4820 1610 137 19 4 chr21 25454189 25454452 -9453118 + AluJb SINE Alu 2 268 -44 2019 101 35 0 chr21 25454642 25454930 -9452640 + AluSg SINE Alu 1 298 -12 758 139 97 35 chr21 25457932 25458076 -9449494 - FRAM SINE Alu -13 153 1 1404 170 57 14 chr21 25458688 25458971 -9448599 + AluJo SINE Alu 1 295 -17 1346 91 115 14 chr21 25459135 25459344 -9448226 + MER30 DNA MER1_type 1 230 0 376 84 116 137 chr21 25459426 25459521 -9448049 - Charlie5 DNA MER1_type -32 2580 2488 1550 145 56 30 chr21 25459802 25460105 -9447465 - AluJb SINE Alu -1 311 1 343 287 30 20 chr21 25462547 25462648 -9444922 + MIR3 SINE MIR 97 198 -10 648 146 0 0 chr21 25463155 25463251 -9444319 + LTR40a LTR ERVL 408 503 -16 318 315 96 0 chr21 25463746 25463892 -9443678 + MIR SINE MIR 77 236 -26 2069 102 0 16 chr21 25464782 25464949 -9442621 - AluSx SINE Alu -13 299 138 2127 91 31 0 chr21 25464949 25465236 -9442334 - AluSq SINE Alu -17 296 1 2069 102 0 16 chr21 25465236 25465372 -9442198 - AluSx SINE Alu -174 138 1 238 115 77 0 chr21 25465755 25465807 -9441763 + L1MC4 LINE L1 6648 6703 -1339 32 0 0 0 chr21 25465807 25465839 -9441731 + AT_rich Low_complexity Low_complexity 1 32 0 786 189 0 0 chr21 25465839 25465966 -9441604 - FLAM_A SINE Alu -6 127 1 199 228 53 0 chr21 25466203 25466260 -9441310 + MIR SINE MIR 82 141 -67 189 107 0 0 chr21 25466290 25466318 -9441252 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 432 259 85 90 chr21 25466396 25466597 -9440973 + L1MC4 LINE L1 7751 7950 -92 837 158 0 0 chr21 25466880 25467019 -9440551 - FLAM_C SINE Alu -4 139 1 2056 106 24 3 chr21 25469542 25469834 -9437736 - AluSq SINE Alu -13 300 3 1944 119 0 14 chr21 25470068 25470363 -9437207 - AluJo SINE Alu -21 291 1 1770 174 0 13 chr21 25471474 25471784 -9435786 + AluJo SINE Alu 1 306 -6 1580 127 69 25 chr21 25472266 25472541 -9435029 + AluJb SINE Alu 13 299 -13 1592 220 42 16 chr21 25473485 25473916 -9433654 + LTR56 LTR ERV1 4 445 0 1668 87 70 8 chr21 25474216 25474458 -9433112 - AluSx SINE Alu -41 271 15 326 289 138 21 chr21 25475166 25475405 -9432165 + L2 LINE L2 2709 2975 -339 302 242 130 50 chr21 25475839 25476000 -9431570 + L1M2a LINE L1 2056 2229 -4939 379 300 77 51 chr21 25476149 25476682 -9430888 + HAL1b LINE L1 345 891 -457 1886 135 18 0 chr21 25476712 25476993 -9430577 - AluJo SINE Alu -26 286 1 574 168 98 35 chr21 25477040 25477183 -9430387 - MER3 DNA MER1_type -57 152 1 466 233 14 82 chr21 25477217 25477363 -9430207 + HAL1b LINE L1 777 912 -436 638 310 108 44 chr21 25477514 25477827 -9429743 + L1MC/D LINE L1 2213 2504 -3711 987 121 0 0 chr21 25477827 25477959 -9429611 + AluJo SINE Alu 1 132 -170 638 310 108 44 chr21 25477959 25478261 -9429309 + L1MC/D LINE L1 2504 2824 -3391 301 274 48 12 chr21 25479042 25479126 -9428444 + L1MC/D LINE L1 4087 4173 -2042 398 296 78 67 chr21 25479134 25479960 -9427610 + L1MC/D LINE L1 4189 5028 -1187 2108 121 0 3 chr21 25479960 25480258 -9427312 + AluSx SINE Alu 1 297 -15 398 296 78 67 chr21 25480258 25480366 -9427204 + L1MC/D LINE L1 5028 5133 -1082 2245 88 3 0 chr21 25480559 25480855 -9426715 + AluSg SINE Alu 1 297 -13 393 261 37 55 chr21 25480878 25481032 -9426538 + L1MC/D LINE L1 5366 5521 -892 431 214 36 9 chr21 25481148 25481260 -9426310 + L1MC/D LINE L1 5715 5829 -2048 216 0 0 0 chr21 25482472 25482496 -9425074 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1055 208 91 52 chr21 25482500 25482873 -9424697 + L1ME1 LINE L1 5613 5963 -203 270 357 54 0 chr21 25483171 25483283 -9424287 - L2 LINE L2 -6 3266 3149 1395 170 9 4 chr21 25483661 25483890 -9423680 + MER46A DNA MER2_type 3 232 -4 791 191 6 48 chr21 25484292 25484460 -9423110 + AluJo SINE Alu 141 301 -1 1977 125 26 0 chr21 25484467 25484772 -9422798 + AluSq SINE Alu 1 313 0 189 0 0 0 chr21 25485790 25485811 -9421759 + (T)n Simple_repeat Simple_repeat 1 21 0 1991 89 0 0 chr21 25485817 25486074 -9421496 - AluSq SINE Alu -56 257 1 25 51 0 0 chr21 25486338 25486377 -9421193 + AT_rich Low_complexity Low_complexity 1 39 0 1731 124 15 11 chr21 25486830 25487103 -9420467 + AluJb SINE Alu 39 312 0 328 216 113 21 chr21 25489907 25490004 -9417566 - MIR SINE MIR -49 213 108 227 276 103 11 chr21 25490072 25490159 -9417411 + MIR SINE MIR 94 188 -74 774 144 0 50 chr21 25490338 25490477 -9417093 + FLAM_C SINE Alu 2 133 -10 270 262 75 0 chr21 25490950 25491030 -9416540 - L2 LINE L2 0 3313 3228 929 196 29 10 chr21 25491166 25491370 -9416200 - L1 LINE L1 -949 5197 4990 22 0 0 0 chr21 25491490 25491512 -9416058 + AT_rich Low_complexity Low_complexity 1 22 0 327 296 111 25 chr21 25491877 25492039 -9415531 + L1M4 LINE L1 2943 3118 -3028 2148 108 10 0 chr21 25492707 25493003 -9414567 - AluSx SINE Alu -13 299 1 283 163 93 12 chr21 25494124 25494210 -9413360 - MER113 DNA MER1_type? -323 198 106 368 210 19 121 chr21 25494554 25494607 -9412963 - L1MC4 LINE L1 0 8042 7985 3242 157 56 9 chr21 25494607 25495252 -9412318 + L1MB7 LINE L1 5510 6184 0 368 210 19 121 chr21 25495252 25495355 -9412215 - L1MC4 LINE L1 -57 7985 7902 1224 240 42 72 chr21 25495503 25495844 -9411726 - L1MC4 LINE L1 -387 7655 7250 2300 78 0 0 chr21 25495844 25496150 -9411420 - AluSx SINE Alu 0 312 7 1224 240 42 72 chr21 25496150 25496280 -9411290 - L1MC4 LINE L1 -792 7250 7118 280 197 40 79 chr21 25496397 25496473 -9411097 + MER5A DNA MER1_type 110 182 -7 419 237 21 0 chr21 25496496 25496589 -9410981 - MIR SINE MIR -56 152 58 200 83 0 28 chr21 25497137 25497173 -9410397 + (CCCCCA)n Simple_repeat Simple_repeat 6 40 0 2200 90 10 0 chr21 25498901 25499201 -9408369 - AluSg SINE Alu -7 303 1 821 299 24 16 chr21 25500232 25500481 -9407089 + LTR16A LTR ERVL 22 272 -178 940 214 112 19 chr21 25500481 25500953 -9406617 - MLT1F1 LTR MaLR -1 566 2 366 198 33 50 chr21 25500964 25501085 -9406485 + LTR16A LTR ERVL 332 450 0 470 222 118 26 chr21 25501113 25501266 -9406304 - MIR SINE MIR -70 192 26 1713 199 75 29 chr21 25501506 25501731 -9405839 - MLT1C LTR MaLR -4 463 250 2063 117 3 7 chr21 25501731 25502030 -9405540 + AluJb SINE Alu 1 298 -14 1713 199 75 29 chr21 25502030 25502247 -9405323 - MLT1C LTR MaLR -217 250 1 244 241 17 0 chr21 25502251 25502309 -9405261 + MLT1A1 LTR MaLR 117 175 -190 845 211 81 5 chr21 25502347 25502532 -9405038 + MLT1A1 LTR MaLR 167 365 0 306 210 14 49 chr21 25502738 25502792 -9404778 + A-rich Low_complexity Low_complexity 6 60 -83 1918 143 0 13 chr21 25502792 25503107 -9404463 + AluSx SINE Alu 1 311 -1 306 210 14 49 chr21 25503107 25503195 -9404375 + A-rich Low_complexity Low_complexity 60 143 0 44 0 0 0 chr21 25503195 25503239 -9404331 + AT_rich Low_complexity Low_complexity 1 44 0 283 161 16 16 chr21 25503407 25503469 -9404101 + L1MC5 LINE L1 7742 7803 -158 429 174 28 14 chr21 25503469 25503613 -9403957 + GA-rich Low_complexity Low_complexity 2 147 0 627 288 115 46 chr21 25504430 25504927 -9402643 + L1 LINE L1 4312 4842 -1304 2123 67 3 11 chr21 25504937 25505268 -9402302 - AluY SINE Alu 0 329 1 756 339 27 23 chr21 25505398 25505801 -9401769 + L1ME LINE L1 4316 4717 -1429 2040 113 7 0 chr21 25505897 25506189 -9401381 - AluSp SINE Alu -19 294 1 1585 159 13 36 chr21 25506222 25506523 -9401047 + AluJo SINE Alu 1 294 -18 605 233 116 39 chr21 25506708 25506940 -9400630 + MLT1H1 LTR MaLR 306 555 0 33 0 0 0 chr21 25507055 25507088 -9400482 + AT_rich Low_complexity Low_complexity 1 33 0 2244 97 0 3 chr21 25507184 25507495 -9400075 + AluSg SINE Alu 1 310 0 1860 136 51 0 chr21 25507532 25507827 -9399743 + AluJb SINE Alu 1 310 -2 2037 99 4 0 chr21 25507895 25508168 -9399402 + AluSp SINE Alu 2 275 -38 1830 204 96 34 chr21 25508267 25508869 -9398701 - MLT1E2 LTR MaLR 0 624 3 274 260 26 0 chr21 25508906 25508983 -9398587 + L1P LINE L1 5325 5403 -748 270 301 52 23 chr21 25509028 25509201 -9398369 + L1ME LINE L1 5471 5648 -516 2618 101 20 6 chr21 25509285 25509642 -9397928 + THE1B LTR MaLR 1 362 -2 1502 199 57 39 chr21 25509907 25510293 -9397277 + L1M4 LINE L1 4641 5033 -1113 1627 118 104 35 chr21 25510295 25510584 -9396986 - AluSg1 SINE Alu 0 309 1 1494 186 3 49 chr21 25510763 25510994 -9396576 - AluJo SINE Alu 0 312 99 2256 79 3 0 chr21 25510994 25511286 -9396284 - AluY SINE Alu -18 293 1 1494 186 3 49 chr21 25511286 25511381 -9396189 - AluJo SINE Alu -213 99 1 1637 126 11 30 chr21 25512006 25512269 -9395301 + MER1A DNA MER1_type 44 301 -228 4647 118 85 117 chr21 25512272 25513683 -9393887 - pTR5 LTR ERV1 0 2438 753 1665 103 12 16 chr21 25513683 25513926 -9393644 + MER1A DNA MER1_type 288 529 0 2156 103 0 28 chr21 25514511 25514850 -9392720 - AluSx SINE Alu 0 330 1 1965 134 0 3 chr21 25515143 25515441 -9392129 + AluSx SINE Alu 1 297 -15 355 340 57 7 chr21 25515461 25515602 -9391968 - L2 LINE L2 -2 3311 3164 469 229 0 0 chr21 25515876 25515972 -9391598 - MLT1D LTR MaLR 0 505 410 2150 105 0 3 chr21 25516168 25516473 -9391097 - AluSg SINE Alu -6 304 1 368 254 95 16 chr21 25516485 25516611 -9390959 - MLT1E2 LTR MaLR -446 180 45 536 128 0 23 chr21 25516927 25517013 -9390557 + MSTD LTR MaLR 1 84 -312 407 149 61 155 chr21 25517066 25517214 -9390356 + MSTD LTR MaLR 182 315 -59 1878 132 11 0 chr21 25517215 25517522 -9390048 - AluJo SINE Alu 0 310 1 969 250 76 113 chr21 25518353 25518412 -9389158 + MLT1J LTR MaLR 12 72 -439 2066 93 3 33 chr21 25518412 25518713 -9388857 - AluSq SINE Alu -21 292 1 969 250 76 113 chr21 25518713 25518866 -9388704 + MLT1J LTR MaLR 72 229 -282 2243 81 10 0 chr21 25518866 25519162 -9388408 + AluSx SINE Alu 3 301 -11 969 250 76 113 chr21 25519162 25519393 -9388177 + MLT1J LTR MaLR 229 437 -74 1864 212 29 62 chr21 25519393 25519912 -9387658 + MLT1D LTR MaLR 4 505 0 969 250 76 113 chr21 25519912 25519978 -9387592 + MLT1J LTR MaLR 437 504 -7 2323 71 0 0 chr21 25521007 25521302 -9386268 + AluY SINE Alu 1 295 -16 2078 231 81 17 chr21 25521302 25521435 -9386135 - MER77 LTR ERV1 -1 604 481 2317 94 0 0 chr21 25521435 25521742 -9385828 + AluSg SINE Alu 1 307 -3 2078 231 81 17 chr21 25521742 25522137 -9385433 - MER77 LTR ERV1 -124 481 42 577 239 69 23 chr21 25522272 25522472 -9385098 + MLT1J LTR MaLR 97 304 -146 410 197 13 0 chr21 25522511 25522587 -9384983 + MLT1J LTR MaLR 428 504 -7 2391 87 0 0 chr21 25523405 25523716 -9383854 - AluY SINE Alu 0 311 1 331 360 43 19 chr21 25524025 25524186 -9383384 - MIR3 SINE MIR -11 197 33 867 116 0 0 chr21 25525224 25525345 -9382225 + AluSq/x SINE Alu 1 121 -192 2243 109 0 0 chr21 25525419 25525731 -9381839 + AluSq SINE Alu 1 312 -1 961 230 35 96 chr21 25526057 25526462 -9381108 + L1MB7 LINE L1 5795 6174 -10 2272 103 0 6 chr21 25526470 25526781 -9380789 - AluSx SINE Alu -3 309 1 2282 93 6 0 chr21 25526816 25527127 -9380443 + AluSq SINE Alu 1 313 0 224 239 94 60 chr21 25527726 25527843 -9379727 + MER5A DNA MER1_type 38 158 -31 347 154 31 31 chr21 25528241 25528306 -9379264 + FLAM_A SINE Alu 10 74 -58 993 130 28 34 chr21 25528319 25528496 -9379074 + AluJo SINE Alu 112 287 -25 421 218 75 48 chr21 25529316 25529463 -9378107 + L1MC5 LINE L1 7633 7783 -178 2324 85 3 0 chr21 25529463 25529770 -9377800 + AluSc SINE Alu 1 308 -1 2015 113 3 0 chr21 25529782 25530102 -9377468 + AluSx SINE Alu 1 321 0 1855 142 3 19 chr21 25531180 25531498 -9376072 - AluSq SINE Alu 0 313 1 1594 171 43 4 chr21 25531805 25532086 -9375484 + AluJb SINE Alu 1 292 -20 1960 129 14 3 chr21 25532453 25532748 -9374822 - AluSx SINE Alu -14 298 1 2142 82 21 10 chr21 25533027 25533318 -9374252 + AluSc SINE Alu 1 294 -15 1397 176 7 54 chr21 25533336 25533660 -9373910 - AluJo SINE Alu 0 310 1 2093 101 0 0 chr21 25533682 25533959 -9373611 - AluSx SINE Alu -16 296 20 289 361 16 6 chr21 25533967 25534150 -9373420 - L1ME LINE L1 -360 5802 5618 414 342 14 14 chr21 25534270 25534492 -9373078 - ERVL LTR ERVL -1098 4666 4445 1379 205 72 20 chr21 25534756 25535103 -9372467 + MLT1A1 LTR MaLR 1 365 0 627 216 26 13 chr21 25535218 25535371 -9372199 - L1MA10 LINE L1 -9 6325 6171 1714 131 0 4 chr21 25535557 25535816 -9371754 + AluJb SINE Alu 1 258 -54 3383 173 43 20 chr21 25535840 25536494 -9371076 - L1MB7 LINE L1 -26 6158 5490 946 133 0 77 chr21 25536496 25536677 -9370893 - AluJb SINE Alu -5 307 141 2166 210 27 25 chr21 25536678 25538281 -9369289 - L1MB7 LINE L1 -671 5503 3713 845 144 0 0 chr21 25538293 25538418 -9369152 + FLAM_C SINE Alu 9 133 -10 528 16 0 0 chr21 25538418 25538479 -9369091 + (TA)n Simple_repeat Simple_repeat 1 61 0 565 294 95 72 chr21 25538795 25539228 -9368342 + L1MEd LINE L1 851 1300 -5072 2157 103 0 3 chr21 25539228 25539551 -9368019 - AluSq SINE Alu 0 323 2 565 294 95 72 chr21 25539551 25539598 -9367972 + L1MEd LINE L1 1300 1344 -5028 298 304 45 21 chr21 25539600 25539843 -9367727 + L1MEd LINE L1 1379 1627 -4936 7296 124 15 32 chr21 25539900 25540035 -9367535 - L1MA3 LINE L1 0 6305 6169 2275 96 0 0 chr21 25540035 25540336 -9367234 - AluSx SINE Alu -11 301 1 7296 124 15 32 chr21 25540336 25540423 -9367147 - L1MA3 LINE L1 -136 6169 6082 2242 85 3 0 chr21 25540423 25540716 -9366854 + AluSp SINE Alu 1 294 -19 7296 124 15 32 chr21 25540716 25541400 -9366170 - L1MA3 LINE L1 -223 6082 5387 2478 52 3 7 chr21 25541400 25541710 -9365860 + AluSc SINE Alu 1 309 0 7296 124 15 32 chr21 25541710 25543066 -9364504 - L1MA3 LINE L1 -918 5387 4083 2189 86 0 3 chr21 25543076 25543368 -9364202 - AluY SINE Alu -20 291 1 524 194 36 122 chr21 25543371 25543567 -9364003 + L1MEd LINE L1 1679 1857 -4706 2246 82 0 0 chr21 25543618 25543935 -9363635 + AluSg SINE Alu 1 317 0 981 43 0 0 chr21 25544284 25544400 -9363170 + MER41A LTR ERV1 353 468 -86 251 290 19 19 chr21 25544472 25544579 -9362991 + L1MEd LINE L1 2367 2473 -3911 871 162 6 31 chr21 25544760 25544920 -9362650 + AluJb SINE Alu 137 292 -20 647 285 11 6 chr21 25544925 25545104 -9362466 + L1MEd LINE L1 2677 2856 -3526 5299 53 0 3 chr21 25545108 25546356 -9361214 + L1PA6 LINE L1 4697 5941 -213 1450 198 0 0 chr21 25546599 25546836 -9360734 - AluJo SINE Alu -75 237 1 24 32 0 0 chr21 25546904 25546935 -9360635 + AT_rich Low_complexity Low_complexity 1 31 0 1378 218 36 0 chr21 25546968 25547248 -9360322 + AluJb SINE Alu 21 310 -2 943 279 89 53 chr21 25547251 25547549 -9360021 + L1MEd LINE L1 3402 3727 -2655 1547 211 0 42 chr21 25547549 25547862 -9359708 + AluJo SINE Alu 2 301 -11 943 279 89 53 chr21 25547862 25548069 -9359501 + L1MEd LINE L1 3727 3925 -2457 2825 22 0 0 chr21 25548078 25548390 -9359180 + AluYb8 SINE Alu 1 312 -6 627 146 10 0 chr21 25548453 25548549 -9359021 + FLAM_C SINE Alu 7 103 -40 421 186 0 78 chr21 25548585 25548679 -9358891 + L1MCa LINE L1 2347 2430 -3996 1930 112 12 0 chr21 25548679 25548937 -9358633 + AluSx SINE Alu 37 297 -15 421 186 0 78 chr21 25548937 25548971 -9358599 + L1MCa LINE L1 2430 2465 -3961 1604 173 58 0 chr21 25548972 25549260 -9358310 + AluJb SINE Alu 9 311 0 3977 166 10 6 chr21 25549300 25550019 -9357551 + L1MB2 LINE L1 5450 6171 0 2459 245 77 38 chr21 25550036 25551102 -9356468 + L1MCa LINE L1 2493 3623 -2803 1820 132 48 4 chr21 25551102 25551416 -9356154 + AluSx SINE Alu 1 326 0 2459 245 77 38 chr21 25551416 25551548 -9356022 + L1MCa LINE L1 3623 3748 -2678 22 0 0 0 chr21 25551685 25551707 -9355863 + AT_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr21 25551925 25551960 -9355610 + (TG)n Simple_repeat Simple_repeat 1 35 0 516 219 67 71 chr21 25552358 25552568 -9355002 - MER3 DNA MER1_type 0 209 1 244 221 32 42 chr21 25553519 25553614 -9353956 - L1ME LINE L1 -4521 1740 1647 1864 153 3 29 chr21 25553624 25553937 -9353633 - AluJo SINE Alu -7 305 1 874 135 0 8 chr21 25553945 25554078 -9353492 - FLAM_C SINE Alu 0 133 2 2194 123 0 3 chr21 25554078 25554422 -9353148 - AluSc SINE Alu 0 309 1 861 272 7 18 chr21 25554428 25554700 -9352870 - L1ME LINE L1 -4612 1649 1381 4315 157 20 29 chr21 25554709 25554964 -9352606 + L1PA16 LINE L1 5325 5581 -585 189 0 0 0 chr21 25554964 25554985 -9352585 + (TC)n Simple_repeat Simple_repeat 2 22 0 1731 156 55 0 chr21 25554985 25555260 -9352310 - AluJo SINE Alu -18 294 5 4315 157 20 29 chr21 25555260 25555449 -9352121 + L1PA16 LINE L1 5580 5769 -397 2159 107 21 0 chr21 25555449 25555739 -9351831 + AluSq SINE Alu 1 296 -17 4315 157 20 29 chr21 25555739 25556142 -9351428 + L1PA16 LINE L1 5769 6166 0 1695 202 3 3 chr21 25556148 25556455 -9351115 + AluJb SINE Alu 1 307 -5 632 299 93 35 chr21 25556479 25556790 -9350780 - L1ME LINE L1 -4876 1206 878 238 68 0 23 chr21 25556842 25556886 -9350684 - L1MA6 LINE L1 -2 6298 6256 672 247 51 52 chr21 25556889 25557282 -9350288 - L1ME LINE L1 -5155 915 570 1806 151 72 4 chr21 25557282 25557561 -9350009 - AluJb SINE Alu -14 298 1 672 247 51 52 chr21 25557561 25557606 -9349964 - L1ME LINE L1 -5500 570 526 1343 111 0 22 chr21 25557804 25558030 -9349540 - MER46B DNA MER2_type -1 235 15 228 56 0 0 chr21 25558027 25558063 -9349507 - AluSx SINE Alu -5 297 262 1820 110 0 0 chr21 25558063 25558299 -9349271 - AluSx SINE Alu -76 236 1 759 157 13 20 chr21 25558299 25558452 -9349118 - MER46B DNA MER2_type -209 27 1 279 158 53 11 chr21 25558745 25558840 -9348730 + (TA)n Simple_repeat Simple_repeat 1 99 0 693 42 21 85 chr21 25558841 25559030 -9348540 + (TATAA)n Simple_repeat Simple_repeat 3 179 0 474 25 133 0 chr21 25559037 25559195 -9348375 + (TA)n Simple_repeat Simple_repeat 1 179 0 548 87 80 23 chr21 25559216 25559520 -9348050 + (TA)n Simple_repeat Simple_repeat 1 321 0 367 236 120 53 chr21 25559671 25559896 -9347674 + L1M4 LINE L1 4296 4535 -1611 2255 116 0 0 chr21 25560139 25560441 -9347129 + AluSx SINE Alu 1 302 -10 1109 164 0 26 chr21 25560625 25560814 -9346756 + AluJb SINE Alu 129 312 0 1790 186 3 0 chr21 25561192 25561488 -9346082 + AluJo SINE Alu 1 297 -15 405 274 55 79 chr21 25561721 25561935 -9345635 - L1M4 LINE L1 -3651 2495 2277 1657 164 3 67 chr21 25561935 25562265 -9345305 - AluJb SINE Alu -3 309 1 2190 121 0 3 chr21 25562266 25562579 -9344991 - AluSq SINE Alu -1 312 1 405 274 55 79 chr21 25562579 25562654 -9344916 - L1M4 LINE L1 -3868 2278 2211 2621 177 10 0 chr21 25562662 25563147 -9344423 - L1MC1 LINE L1 -2 6331 5842 23 0 0 0 chr21 25563147 25563170 -9344400 + AT_rich Low_complexity Low_complexity 1 23 0 1897 101 41 16 chr21 25563170 25563488 -9344082 - L1MA1 LINE L1 -2 6300 5975 1467 143 4 0 chr21 25563488 25563733 -9343837 - L1MC1 LINE L1 -513 5820 5575 4020 110 2 24 chr21 25563733 25564370 -9343200 + L1PB1 LINE L1 5528 6151 0 973 164 10 5 chr21 25564473 25564581 -9342989 - L1MC1 LINE L1 -2450 5592 5481 1862 161 104 42 chr21 25564581 25564820 -9342750 - MSTA LTR MaLR 0 428 151 2027 120 7 7 chr21 25564820 25565127 -9342443 + AluSx SINE Alu 1 307 0 1862 161 104 42 chr21 25565127 25565288 -9342282 - MSTA LTR MaLR -277 151 1 973 164 10 5 chr21 25565288 25565374 -9342196 - L1MC1 LINE L1 -2561 5481 5397 3155 165 42 56 chr21 25565420 25565817 -9341753 - L1MB2 LINE L1 -1 6170 5769 2039 93 38 17 chr21 25565817 25566108 -9341462 - AluSx SINE Alu -15 297 1 1914 147 27 3 chr21 25566108 25566408 -9341162 - AluJo SINE Alu -2 310 4 3155 165 42 56 chr21 25566408 25566744 -9340826 - L1MB2 LINE L1 -400 5771 5446 1893 156 7 0 chr21 25566764 25567059 -9340511 + AluJb SINE Alu 1 297 -15 769 159 0 8 chr21 25567253 25567385 -9340185 - FLAM_A SINE Alu -2 131 1 361 265 0 0 chr21 25567427 25567525 -9340045 - MIR SINE MIR -18 244 147 27 49 0 0 chr21 25567525 25567566 -9340004 + AT_rich Low_complexity Low_complexity 1 41 0 836 202 74 85 chr21 25567583 25567935 -9339635 - L1MC3 LINE L1 -3 7782 7435 349 237 77 64 chr21 25568279 25568435 -9339135 + MIR SINE MIR 105 262 0 284 70 23 0 chr21 25569408 25569451 -9338119 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 794 234 77 27 chr21 25570301 25570524 -9337046 - L1MC5 LINE L1 -48 7913 7703 2037 82 0 4 chr21 25570524 25570780 -9336790 + AluSq SINE Alu 49 303 -10 1921 156 10 0 chr21 25570784 25571092 -9336478 + AluJb SINE Alu 1 311 -1 794 234 77 27 chr21 25571092 25571264 -9336306 - L1MC5 LINE L1 -260 7701 7493 192 200 0 0 chr21 25571278 25571323 -9336247 + CT-rich Low_complexity Low_complexity 5 49 0 1710 154 20 24 chr21 25572035 25572198 -9335372 + AluJb SINE Alu 1 159 -153 2620 108 3 11 chr21 25572198 25572576 -9334994 - THE1C LTR MaLR 0 375 1 1710 154 20 24 chr21 25572576 25572730 -9334840 + AluJb SINE Alu 159 312 0 2085 78 71 11 chr21 25572734 25573017 -9334553 + AluY SINE Alu 1 300 -11 2300 115 0 0 chr21 25573076 25573388 -9334182 - AluSx SINE Alu 0 312 1 323 257 52 59 chr21 25573389 25573525 -9334045 - MIR3 SINE MIR -59 149 15 2106 85 33 0 chr21 25573744 25574044 -9333526 - AluSx SINE Alu 0 309 1 336 330 9 9 chr21 25574358 25574473 -9333097 - MIR3 SINE MIR -50 158 44 1813 177 7 3 chr21 25574853 25575147 -9332423 - AluJo SINE Alu -17 295 1 1641 194 16 19 chr21 25575173 25575505 -9332065 + AluJo SINE Alu 1 312 0 736 245 75 56 chr21 25575538 25575951 -9331619 + L1MC4 LINE L1 7480 7900 -142 593 278 69 52 chr21 25576056 25576134 -9331436 - HAL1 LINE L1 -36 2471 2396 2165 136 3 3 chr21 25576134 25576444 -9331126 - AluSx SINE Alu -2 310 1 593 278 69 52 chr21 25576444 25577245 -9330325 - HAL1 LINE L1 -111 2396 1381 521 305 46 7 chr21 25577246 25577531 -9330039 - HAL1 LINE L1 -1132 1375 1080 416 252 32 24 chr21 25577534 25577657 -9329913 - HAL1 LINE L1 -1402 1105 982 251 171 57 19 chr21 25577729 25577834 -9329736 + (TA)n Simple_repeat Simple_repeat 2 110 0 30 69 0 0 chr21 25577837 25577895 -9329675 + AT_rich Low_complexity Low_complexity 1 58 0 24 53 0 0 chr21 25577964 25578002 -9329568 + AT_rich Low_complexity Low_complexity 1 38 0 835 302 49 11 chr21 25578405 25578878 -9328692 - L1ME LINE L1 -4576 1685 1195 788 289 79 77 chr21 25578879 25579467 -9328103 - L1ME LINE L1 -4991 1079 547 1371 114 0 2 chr21 25579548 25579798 -9327772 - AluY SINE Alu 0 309 1 1068 249 0 9 chr21 25580545 25580770 -9326800 + MER58A DNA MER1_type 1 223 -1 2366 69 0 20 chr21 25581202 25581506 -9326064 + AluY SINE Alu 1 298 -13 21 57 0 0 chr21 25582036 25582071 -9325499 + AT_rich Low_complexity Low_complexity 1 35 0 2073 103 12 62 chr21 25582372 25582500 -9325070 + AluJb SINE Alu 3 136 -176 2387 77 13 0 chr21 25582500 25582798 -9324772 + AluSp SINE Alu 1 302 -11 2073 103 12 62 chr21 25582798 25582990 -9324580 + AluJb SINE Alu 136 307 -5 606 64 53 11 chr21 25583198 25583292 -9324278 - MER75 DNA T2_type 0 514 417 831 148 0 0 chr21 25583292 25583414 -9324156 - AluJb SINE Alu -16 296 175 2664 94 36 10 chr21 25583414 25583827 -9323743 - MER75 DNA T2_type -90 424 1 2226 261 40 25 chr21 25583852 25584591 -9322979 + L1M4 LINE L1 2171 2928 -3218 1763 78 0 0 chr21 25584591 25584810 -9322760 + AluSg/x SINE Alu 82 300 -10 2226 261 40 25 chr21 25584810 25584995 -9322575 + L1M4 LINE L1 2928 3109 -3037 348 378 38 16 chr21 25585127 25585312 -9322258 + L2 LINE L2 3084 3272 0 1681 189 0 3 chr21 25585828 25586114 -9321456 + AluJb SINE Alu 1 285 -27 21 0 0 0 chr21 25586114 25586135 -9321435 + AT_rich Low_complexity Low_complexity 1 21 0 207 217 43 0 chr21 25586272 25586318 -9321252 - L2 LINE L2 -12 3301 3254 21 57 0 0 chr21 25586537 25586572 -9320998 + AT_rich Low_complexity Low_complexity 1 35 0 599 306 91 33 chr21 25586751 25587081 -9320489 + L3 LINE CR1 1143 1491 -86 2290 96 0 0 chr21 25587142 25587435 -9320135 - AluSx SINE Alu -19 293 1 209 328 16 0 chr21 25588630 25588694 -9318876 - L2 LINE L2 -5 3267 3203 2085 118 7 0 chr21 25589160 25589471 -9318099 + AluSx SINE Alu 1 313 0 1938 171 0 13 chr21 25589477 25589793 -9317777 + AluJo SINE Alu 1 312 0 220 98 20 78 chr21 25589795 25589846 -9317724 + (CAAAC)n Simple_repeat Simple_repeat 3 50 0 2129 113 14 0 chr21 25590350 25590643 -9316927 - AluSx SINE Alu -15 297 1 180 0 0 0 chr21 25590814 25590834 -9316736 + (TC)n Simple_repeat Simple_repeat 2 21 0 2156 122 3 0 chr21 25590941 25591235 -9316335 + AluSq SINE Alu 1 295 -18 2234 94 0 7 chr21 25591447 25591755 -9315815 + AluSc SINE Alu 1 306 -3 315 321 58 42 chr21 25592026 25592266 -9315304 + L1MC4a LINE L1 5642 5885 -1923 1943 169 0 6 chr21 25592511 25592824 -9314746 + AluJb SINE Alu 1 311 -1 2247 118 0 0 chr21 25592951 25593255 -9314315 + AluSx SINE Alu 1 304 -8 1416 200 108 17 chr21 25593574 25593934 -9313636 - MLT1C LTR MaLR 0 467 75 180 77 0 0 chr21 25596194 25596220 -9311350 + (CCCCCT)n Simple_repeat Simple_repeat 4 29 0 212 214 35 35 chr21 25596241 25596386 -9311184 + (CGCGG)n Simple_repeat Simple_repeat 4 148 0 223 197 0 61 chr21 25596409 25596475 -9311095 + C-rich Low_complexity Low_complexity 1 62 0 270 194 0 0 chr21 25596928 25596990 -9310580 + (CTG)n Simple_repeat Simple_repeat 3 64 0 286 280 0 0 chr21 25597009 25597102 -9310468 + (TG)n Simple_repeat Simple_repeat 1 93 0 28 0 0 0 chr21 25597143 25597171 -9310399 + GC_rich Low_complexity Low_complexity 1 28 0 27 87 0 0 chr21 25597250 25597319 -9310251 + GC_rich Low_complexity Low_complexity 1 69 0 202 255 31 20 chr21 25597420 25597518 -9310052 + G-rich Low_complexity Low_complexity 5 103 0 234 141 71 47 chr21 25597577 25597662 -9309908 + (CCCGG)n Simple_repeat Simple_repeat 5 91 0 25 31 0 0 chr21 25597691 25597723 -9309847 + GC_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr21 25597791 25597833 -9309737 + GC_rich Low_complexity Low_complexity 1 42 0 303 130 0 0 chr21 25597883 25597937 -9309633 + (TCC)n Simple_repeat Simple_repeat 1 54 0 205 102 41 41 chr21 25598016 25598065 -9309505 + (CCGGG)n Simple_repeat Simple_repeat 3 51 0 298 295 151 0 chr21 25598548 25598714 -9308856 - MIR SINE MIR -33 229 39 1659 143 68 4 chr21 25602104 25602222 -9305348 + AluJb SINE Alu 1 110 -202 183 42 0 0 chr21 25602222 25602246 -9305324 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1659 143 68 4 chr21 25602246 25602406 -9305164 + AluJb SINE Alu 110 297 -15 449 265 142 12 chr21 25602506 25602668 -9304902 + MIR SINE MIR 22 204 -58 242 400 11 0 chr21 25602916 25603006 -9304564 + L2 LINE L2 3132 3222 -50 258 331 56 25 chr21 25603043 25603203 -9304367 + MIR SINE MIR 47 211 -51 438 266 121 12 chr21 25603371 25603544 -9304026 - MLT1J LTR MaLR 0 511 320 737 250 82 0 chr21 25603602 25603786 -9303784 - MLT1J LTR MaLR -280 231 33 305 243 112 79 chr21 25604411 25604500 -9303070 - MER5A DNA MER1_type -30 159 61 2375 78 0 3 chr21 25604500 25604795 -9302775 - AluY SINE Alu -17 294 1 305 243 112 79 chr21 25604795 25604857 -9302713 - MER5A DNA MER1_type -128 61 3 219 336 102 8 chr21 25604863 25604991 -9302579 - MIR3 SINE MIR -52 156 17 2010 111 66 7 chr21 25605462 25605751 -9301819 - AluSq SINE Alu -7 306 1 733 196 39 13 chr21 25605816 25605969 -9301601 + LTR1B LTR ERV1 67 223 -603 1705 141 52 4 chr21 25606170 25606439 -9301131 + AluSg SINE Alu 1 282 -28 2285 77 0 0 chr21 25607075 25607360 -9300210 - AluY SINE Alu -25 286 2 1026 303 80 9 chr21 25607363 25607418 -9300152 - L1MC4a LINE L1 -1926 5882 5832 1555 171 50 14 chr21 25607418 25607699 -9299871 - AluJo SINE Alu -21 291 1 1026 303 80 9 chr21 25607699 25608108 -9299462 - L1MC4a LINE L1 -1976 5832 5385 2168 107 3 3 chr21 25608193 25608492 -9299078 + AluSp SINE Alu 1 299 -14 243 242 42 83 chr21 25609792 25609912 -9297658 - L2 LINE L2 -15 3298 3184 405 253 0 0 chr21 25611018 25611101 -9296469 + L2 LINE L2 3227 3309 -4 852 146 41 41 chr21 25611589 25611760 -9295810 + AluJb SINE Alu 135 305 -7 341 289 9 35 chr21 25612037 25612151 -9295419 - L2 LINE L2 -10 3303 3193 38 0 0 0 chr21 25612151 25612189 -9295381 + AT_rich Low_complexity Low_complexity 1 38 0 512 70 14 14 chr21 25612203 25612274 -9295296 - FLAM_A SINE Alu -30 112 42 939 241 103 97 chr21 25612912 25613426 -9294144 + LTR67 LTR ERVL 35 551 -6 556 238 55 28 chr21 25613580 25613761 -9293809 - L2 LINE L2 -24 3289 3104 231 36 0 0 chr21 25613775 25613803 -9293767 + (TG)n Simple_repeat Simple_repeat 2 29 0 920 316 75 23 chr21 25614051 25614884 -9292686 + L1MEc LINE L1 255 1127 -5088 1154 221 81 20 chr21 25615112 25615624 -9291946 - MLT1E LTR MaLR -1 653 6 237 186 0 0 chr21 25615849 25615892 -9291678 - MER103 DNA DNA -43 123 81 1267 79 0 79 chr21 25616121 25616323 -9291247 + Charlie3 DNA MER1_type 2521 2706 -4 256 184 53 66 chr21 25616477 25616553 -9291017 - HAL1 LINE L1 -111 2396 2322 229 240 125 0 chr21 25616553 25616649 -9290921 - MLT1K LTR MaLR 0 588 481 227 203 169 0 chr21 25616886 25616945 -9290625 - MLT1L LTR MaLR -427 188 120 227 177 32 32 chr21 25617048 25617110 -9290460 - MLT1L LTR MaLR -537 78 17 594 227 91 5 chr21 25617201 25617399 -9290171 - HAL1 LINE L1 -291 2216 2002 849 231 40 12 chr21 25617578 25617825 -9289745 - HAL1 LINE L1 -731 1776 1523 1476 170 82 7 chr21 25618043 25618325 -9289245 - AluJo SINE Alu -9 303 1 388 239 108 40 chr21 25618361 25618583 -9288987 - L1MC5 LINE L1 -210 7751 7515 2334 86 13 0 chr21 25618583 25618886 -9288684 - AluY SINE Alu -4 307 1 329 105 0 70 chr21 25618904 25618961 -9288609 - Alu SINE Alu -10 290 238 890 171 0 8 chr21 25618992 25619121 -9288449 - FLAM_C SINE Alu -5 128 1 23 33 0 0 chr21 25619140 25619170 -9288400 + AT_rich Low_complexity Low_complexity 1 30 0 1380 161 0 14 chr21 25619179 25619402 -9288168 - AluJo SINE Alu -86 226 7 699 245 73 5 chr21 25619499 25619691 -9287879 - HAL1 LINE L1 -1570 937 733 912 183 11 21 chr21 25619856 25620042 -9287528 - AluJo SINE Alu -2 310 127 1107 266 65 25 chr21 25620252 25620516 -9287054 - L1MC4 LINE L1 -132 7910 7621 2176 105 7 3 chr21 25620516 25620812 -9286758 - AluSx SINE Alu -15 297 1 1107 266 65 25 chr21 25620812 25620980 -9286590 - L1MC4 LINE L1 -421 7621 7461 259 241 36 0 chr21 25620986 25621069 -9286501 - L1M4 LINE L1 -983 5163 5078 464 276 16 0 chr21 25621071 25621198 -9286372 - L1MC4a LINE L1 -1073 6735 6607 196 200 0 25 chr21 25621978 25622018 -9285552 - MIR SINE MIR -145 117 79 198 143 95 0 chr21 25622193 25622235 -9285335 + L2 LINE L2 3014 3059 -213 1270 218 16 16 chr21 25622355 25622612 -9284958 - MLT1A1 LTR MaLR 0 365 109 1274 193 41 114 chr21 25622671 25623064 -9284506 - MLT1A1 LTR MaLR -1 364 1 493 197 148 0 chr21 25623602 25623724 -9283846 - MLT1G1 LTR MaLR -7 588 449 456 233 63 48 chr21 25623781 25623970 -9283600 - MLT1G1 LTR MaLR -249 300 109 484 50 0 0 chr21 25624195 25624255 -9283315 - L1PA4 LINE L1 -3 6152 6093 21 0 0 0 chr21 25624304 25624325 -9283245 + AT_rich Low_complexity Low_complexity 1 21 0 2242 132 9 6 chr21 25624412 25624744 -9282826 + MER1B DNA MER1_type 1 333 -6 296 81 0 0 chr21 25625320 25625357 -9282213 + LTR23 LTR ERV1 320 356 -81 570 168 0 37 chr21 25625372 25625479 -9282091 + MER106B DNA MER1_type 49 151 -908 27 29 0 0 chr21 25625490 25625524 -9282046 + AT_rich Low_complexity Low_complexity 1 34 0 383 221 99 25 chr21 25627034 25627153 -9280417 - MLT1J2 LTR MaLR -286 199 59 239 281 94 50 chr21 25627594 25627754 -9279816 - MER5B DNA MER1_type -8 170 4 323 244 122 32 chr21 25627612 25627735 -9279835 + MER5A DNA MER1_type 38 171 -18 789 131 66 16 chr21 25627898 25628020 -9279550 + AluJo SINE Alu 1 128 -174 311 132 15 0 chr21 25628020 25628088 -9279482 + (TA)n Simple_repeat Simple_repeat 2 70 0 204 40 0 0 chr21 25628106 25628131 -9279439 + (CA)n Simple_repeat Simple_repeat 2 26 0 816 168 36 36 chr21 25628137 25628304 -9279266 + AluJo SINE Alu 134 300 -12 251 346 40 10 chr21 25628580 25628681 -9278889 - L2 LINE L2 -35 3237 3134 22 0 0 0 chr21 25628847 25628869 -9278701 + AT_rich Low_complexity Low_complexity 1 22 0 1649 225 80 39 chr21 25629866 25630351 -9277219 - MLT1D LTR MaLR 0 505 1 2257 117 3 0 chr21 25630805 25631105 -9276465 + AluSx SINE Alu 1 301 -11 2246 113 0 0 chr21 25631425 25631725 -9275845 - AluSq SINE Alu -13 300 1 711 268 57 43 chr21 25632152 25632522 -9275048 - L1ME LINE L1 -4624 1939 1565 696 254 25 79 chr21 25632528 25632695 -9274875 - L1ME LINE L1 -5042 1342 1168 2127 135 0 6 chr21 25632695 25633007 -9274563 - AluSx SINE Alu -2 310 1 696 254 25 79 chr21 25633007 25633401 -9274169 - L1ME LINE L1 -5216 1168 790 844 217 47 79 chr21 25633410 25633606 -9273964 - AluJo SINE Alu -30 282 94 333 0 0 0 chr21 25633606 25633643 -9273927 + (TG)n Simple_repeat Simple_repeat 2 38 0 844 217 47 79 chr21 25633643 25633699 -9273871 - AluJo SINE Alu -218 94 38 340 140 28 203 chr21 25634033 25634176 -9273394 - MLT2B1 LTR ERVL 0 520 403 422 200 12 0 chr21 25634178 25634258 -9273312 - MLT2B2 LTR ERVL -434 81 1 1805 155 3 26 chr21 25636360 25636663 -9270907 + AluSx SINE Alu 5 300 -12 456 174 0 0 chr21 25636664 25636785 -9270785 + (TA)n Simple_repeat Simple_repeat 2 122 0 21 57 0 0 chr21 25636864 25636899 -9270671 + AT_rich Low_complexity Low_complexity 1 35 0 1746 160 108 0 chr21 25637063 25637388 -9270182 - MER46B DNA MER2_type -1 235 1 25 0 0 0 chr21 25638497 25638522 -9269048 + AT_rich Low_complexity Low_complexity 1 25 0 195 280 120 0 chr21 25639180 25639255 -9268315 - MIR SINE MIR -16 246 163 23 33 0 0 chr21 25639861 25639891 -9267679 + AT_rich Low_complexity Low_complexity 1 30 0 865 200 12 18 chr21 25640471 25640641 -9266929 - FRAM SINE Alu -14 162 1 1979 168 0 3 chr21 25640708 25641018 -9266552 + AluSx SINE Alu 1 309 -3 2109 108 4 4 chr21 25641020 25641298 -9266272 + AluSg SINE Alu 3 280 -30 295 280 93 51 chr21 25642335 25642453 -9265117 + MER5A DNA MER1_type 1 123 -66 246 302 25 0 chr21 25643257 25643376 -9264194 + (TA)n Simple_repeat Simple_repeat 2 123 0 208 143 0 0 chr21 25643999 25644034 -9263536 + (TA)n Simple_repeat Simple_repeat 1 35 0 545 278 72 10 chr21 25644225 25644434 -9263136 + MIR SINE MIR 2 223 -39 1808 161 3 10 chr21 25645411 25645709 -9261861 - AluJb SINE Alu -16 296 1 489 278 53 30 chr21 25646025 25646194 -9261376 + MIR SINE MIR 84 256 -6 180 0 0 0 chr21 25646260 25646280 -9261290 + (T)n Simple_repeat Simple_repeat 1 20 0 2128 94 17 11 chr21 25647144 25647431 -9260139 - AluSp SINE Alu -24 289 1 411 98 0 0 chr21 25647436 25647497 -9260073 + (T)n Simple_repeat Simple_repeat 1 61 0 22 0 0 0 chr21 25651361 25651383 -9256187 + AT_rich Low_complexity Low_complexity 1 22 0 867 113 0 7 chr21 25652608 25652749 -9254821 + L1MA9 LINE L1 6168 6307 -5 264 207 0 69 chr21 25652942 25653000 -9254570 - L2 LINE L2 -10 3262 3209 185 265 133 20 chr21 25653118 25653216 -9254354 + L2 LINE L2 2172 2280 -1034 2281 78 0 33 chr21 25656571 25656878 -9250692 + AluY SINE Alu 1 297 -14 1585 164 7 48 chr21 25657064 25657357 -9250213 - AluJo SINE Alu -22 290 10 428 275 79 24 chr21 25657489 25657707 -9249863 - L1MC/D LINE L1 -440 5681 5502 663 236 171 23 chr21 25657897 25658113 -9249457 - MIR SINE MIR -7 255 8 558 131 0 0 chr21 25658789 25658873 -9248697 - AluS SINE Alu -229 84 1 1922 169 127 5 chr21 25659268 25659647 -9247923 - MSTA LTR MaLR 0 428 4 23 0 0 0 chr21 25659989 25660012 -9247558 + AT_rich Low_complexity Low_complexity 1 23 0 1260 92 6 0 chr21 25662769 25662933 -9244637 + AluSp SINE Alu 134 298 -15 204 40 0 0 chr21 25662987 25663012 -9244558 + (TA)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr21 25664636 25664657 -9242913 + AT_rich Low_complexity Low_complexity 1 21 0 214 290 0 58 chr21 25667263 25667332 -9240238 - L2 LINE L2 -874 2440 2376 451 225 36 7 chr21 25667394 25667532 -9240038 - L1MA10 LINE L1 -1 6333 6192 4481 216 78 39 chr21 25667564 25669396 -9238174 - L1ME1 LINE L1 -263 5972 4058 1403 145 176 14 chr21 25669396 25669686 -9237884 + MER1B DNA MER1_type 1 337 0 4481 216 78 39 chr21 25669686 25670005 -9237565 - L1ME1 LINE L1 -2177 4058 3753 2237 265 63 43 chr21 25669986 25670073 -9237497 - L1ME1 LINE L1 -2967 3248 3164 2365 98 0 3 chr21 25670073 25670379 -9237191 - AluSx SINE Alu -7 305 1 2237 265 63 43 chr21 25670379 25672519 -9235051 - L1ME1 LINE L1 -3051 3164 1021 591 174 0 104 chr21 25672534 25672678 -9234892 - FLAM_C SINE Alu -1 132 4 1530 165 50 11 chr21 25672778 25673057 -9234513 - AluJo SINE Alu -13 299 10 803 204 37 0 chr21 25673088 25673250 -9234320 - FRAM SINE Alu -8 168 1 1237 257 24 13 chr21 25673264 25673641 -9233929 - L1ME1 LINE L1 -5472 924 544 1474 162 38 17 chr21 25673646 25673936 -9233634 - MLT1C LTR MaLR -170 297 2 601 250 7 0 chr21 25674918 25675054 -9232516 - MIR SINE MIR -112 150 14 443 234 71 50 chr21 25675332 25675473 -9232097 - L2 LINE L2 -11 3302 3159 704 131 39 39 chr21 25675804 25675934 -9231636 + AluJo SINE Alu 1 130 -182 194 170 377 19 chr21 25676597 25676703 -9230867 - MIR3 SINE MIR -11 197 54 211 253 13 13 chr21 25677249 25677324 -9230246 + (TA)n Simple_repeat Simple_repeat 2 76 0 908 192 6 22 chr21 25677399 25677581 -9229989 + MER58A DNA MER1_type 46 224 0 24 32 0 0 chr21 25678250 25678281 -9229289 + AT_rich Low_complexity Low_complexity 1 31 0 270 283 67 58 chr21 25678307 25678427 -9229143 - MER5B DNA MER1_type -25 153 33 1747 183 0 26 chr21 25678632 25678938 -9228632 - AluJb SINE Alu -12 300 3 1076 271 86 10 chr21 25679179 25679588 -9227982 - MLT1J1 LTR MaLR 0 446 7 323 333 26 37 chr21 25680090 25680279 -9227291 - LTR67 LTR ERVL -368 189 3 181 260 0 0 chr21 25680367 25680417 -9227153 + MIR3 SINE MIR 112 161 -47 243 200 0 0 chr21 25680438 25680483 -9227087 - L2 LINE L2 0 3313 3269 518 188 69 0 chr21 25680835 25680936 -9226634 + Tigger3(Golem) DNA MER2_type 1 108 -2921 2274 152 126 67 chr21 25680927 25681574 -9225996 + Tigger3(Golem) DNA MER2_type 2278 2930 -99 541 250 0 28 chr21 25681583 25681727 -9225843 + Tigger3(Golem) DNA MER2_type 2880 3019 -10 423 286 6 29 chr21 25682409 25682580 -9224990 - MER117 DNA MER1_type -30 167 1 201 175 0 25 chr21 25682585 25682625 -9224945 + GA-rich Low_complexity Low_complexity 2 40 0 180 0 0 0 chr21 25682700 25682720 -9224850 + (T)n Simple_repeat Simple_repeat 1 20 0 338 98 98 0 chr21 25682826 25682887 -9224683 - MER33 DNA MER1_type 0 324 258 851 174 11 28 chr21 25682891 25683069 -9224501 + AluJo SINE Alu 120 294 -18 23 33 0 0 chr21 25683083 25683113 -9224457 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr21 25683131 25683159 -9224411 + AT_rich Low_complexity Low_complexity 1 28 0 523 229 68 0 chr21 25683159 25683307 -9224263 - MER33 DNA MER1_type -261 63 1 236 83 0 0 chr21 25683307 25683343 -9224227 + L2 LINE L2 3236 3271 -1 1949 155 3 3 chr21 25684028 25684332 -9223238 - AluJo SINE Alu -5 307 4 210 320 70 10 chr21 25685144 25685244 -9222326 - MIR3 SINE MIR -94 114 9 435 254 152 42 chr21 25685701 25685918 -9221652 - MIR SINE MIR -15 247 7 531 82 0 0 chr21 25686954 25687027 -9220543 + (TTTA)n Simple_repeat Simple_repeat 1 73 0 976 162 26 0 chr21 25687030 25687184 -9220386 - AluSg/x SINE Alu -30 280 123 1783 130 11 25 chr21 25687194 25687479 -9220091 - AluSx SINE Alu -31 281 1 351 0 0 0 chr21 25688211 25688250 -9219320 + (TG)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr21 25688263 25688284 -9219286 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr21 25689849 25689880 -9217690 + AT_rich Low_complexity Low_complexity 1 31 0 25 75 0 0 chr21 25690770 25690823 -9216747 + AT_rich Low_complexity Low_complexity 1 53 0 22 80 0 0 chr21 25691177 25691227 -9216343 + AT_rich Low_complexity Low_complexity 1 50 0 656 266 70 31 chr21 25691327 25691783 -9215787 - L1MEc LINE L1 -4435 1780 1247 675 295 59 33 chr21 25691797 25692343 -9215227 - L1MEc LINE L1 -5207 1189 630 832 326 45 32 chr21 25692386 25692919 -9214651 - L1MEc LINE L1 -5822 574 35 356 129 0 14 chr21 25693106 25693176 -9214394 + (TG)n Simple_repeat Simple_repeat 2 70 0 304 256 0 35 chr21 25693303 25693389 -9214181 - L2 LINE L2 -5 3308 3226 414 244 0 0 chr21 25693556 25693642 -9213928 - L2 LINE L2 0 3313 3228 399 145 0 53 chr21 25694637 25694713 -9212857 - MER116 DNA Mariner -1 79 8 258 325 0 13 chr21 25695451 25695497 -9212073 + MER5A DNA MER1_type 31 77 -112 2090 141 0 0 chr21 25695497 25695796 -9211774 + AluSx SINE Alu 1 299 -13 258 325 0 13 chr21 25695796 25695826 -9211744 + MER5A DNA MER1_type 77 106 -83 210 91 0 0 chr21 25697044 25697077 -9210493 + (A)n Simple_repeat Simple_repeat 1 33 0 1532 183 38 7 chr21 25697182 25697472 -9210098 - AluJb SINE Alu -13 299 1 568 293 32 20 chr21 25697472 25697721 -9209849 + L1ME2 LINE L1 3820 4071 -2075 397 242 121 30 chr21 25697726 25697858 -9209712 + L1ME2 LINE L1 4057 4200 -1946 349 216 125 0 chr21 25697858 25697946 -9209624 - MER3 DNA MER1_type -108 101 3 1480 195 31 14 chr21 25698057 25698349 -9209221 - AluJo SINE Alu -15 297 1 500 287 97 37 chr21 25698468 25699166 -9208404 + L1ME2 LINE L1 4801 5558 -612 408 221 19 29 chr21 25699209 25699313 -9208257 + L1ME2 LINE L1 5670 5772 -398 2038 139 87 30 chr21 25699402 25699804 -9207766 - MSTA LTR MaLR -3 425 1 2396 59 3 0 chr21 25699822 25700109 -9207461 + AluY SINE Alu 17 304 -7 252 318 0 23 chr21 25701575 25701663 -9205907 - MIR3 SINE MIR -114 94 9 26 0 0 0 chr21 25702973 25702999 -9204571 + AT_rich Low_complexity Low_complexity 1 26 0 26 50 0 0 chr21 25704172 25704212 -9203358 + AT_rich Low_complexity Low_complexity 1 40 0 303 289 39 16 chr21 25706134 25706262 -9201308 + MIR SINE MIR 76 206 -56 25 31 0 0 chr21 25708490 25708522 -9199048 + AT_rich Low_complexity Low_complexity 1 32 0 2426 69 0 25 chr21 25709550 25709869 -9197701 - AluY SINE Alu 0 311 1 518 204 92 33 chr21 25710164 25710316 -9197254 + L1ME2 LINE L1 5997 6157 -7 2051 115 0 17 chr21 25711331 25711638 -9195932 - AluSx SINE Alu 0 302 1 787 153 0 51 chr21 25711666 25711803 -9195767 + FLAM_C SINE Alu 1 130 -3 7991 71 7 9 chr21 25712208 25713268 -9194302 - MER11C LTR ERVK -14 1057 1 264 30 0 0 chr21 25713506 25713539 -9194031 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 1641 163 14 14 chr21 25713543 25713825 -9193745 - AluJo SINE Alu -30 282 1 1455 124 25 33 chr21 25713953 25714194 -9193376 + MER1B DNA MER1_type 57 295 -44 2117 126 0 7 chr21 25714272 25714573 -9192997 - AluSq SINE Alu -14 299 1 321 239 11 65 chr21 25714965 25715057 -9192513 - MER5B DNA MER1_type 0 178 92 408 187 75 9 chr21 25717375 25717482 -9190088 - MER104 DNA MER2_type -5 175 62 518 66 0 121 chr21 25720472 25720563 -9187007 + MADE1 DNA Mariner 1 80 0 224 284 69 49 chr21 25721834 25721936 -9185634 + MER5A DNA MER1_type 36 139 -50 21 0 0 0 chr21 25722496 25722517 -9185053 + AT_rich Low_complexity Low_complexity 1 21 0 195 354 25 0 chr21 25723764 25723843 -9183727 - MIR SINE MIR -123 139 59 440 173 0 0 chr21 25723873 25723954 -9183616 - AluSx SINE Alu -2 309 229 1290 128 0 0 chr21 25723954 25724134 -9183436 - AluSx SINE Alu -132 180 1 2122 122 7 0 chr21 25724609 25724903 -9182667 + AluSx SINE Alu 2 297 -15 450 0 0 0 chr21 25725095 25725145 -9182425 + (TG)n Simple_repeat Simple_repeat 1 50 0 1761 148 13 57 chr21 25725170 25725318 -9182252 + AluJb SINE Alu 1 129 -183 1844 113 102 4 chr21 25725318 25725583 -9181987 + AluSx SINE Alu 1 291 -21 1761 148 13 57 chr21 25725583 25725752 -9181818 + AluJb SINE Alu 129 304 -8 459 312 75 20 chr21 25725796 25725995 -9181575 + L2 LINE L2 3102 3311 -2 24 32 0 0 chr21 25727862 25727893 -9179677 + AT_rich Low_complexity Low_complexity 1 31 0 1799 221 111 19 chr21 25728313 25728933 -9178637 - L1ME2 LINE L1 -184 6260 5584 670 202 59 39 chr21 25728987 25729741 -9177829 - L1ME2 LINE L1 -923 5503 4543 466 139 0 14 chr21 25729742 25729814 -9177756 + Tigger2 DNA MER2_type 1 71 -2647 1007 175 17 17 chr21 25729849 25730026 -9177544 - MER8 DNA MER2_type -62 177 1 3621 246 74 32 chr21 25730134 25731110 -9176460 - L1ME2 LINE L1 -2195 4231 3161 2349 96 3 0 chr21 25731110 25731411 -9176159 - AluSc SINE Alu -7 302 1 3621 246 74 32 chr21 25731411 25732028 -9175542 - L1ME2 LINE L1 -3265 3161 2571 748 262 152 35 chr21 25732088 25732462 -9175108 - L1ME2 LINE L1 -3999 2608 2191 724 256 80 82 chr21 25732470 25733360 -9174210 - L1ME2 LINE L1 -4406 2020 1276 1356 184 12 16 chr21 25733378 25733623 -9173947 - AluJo SINE Alu -25 287 44 475 240 32 93 chr21 25733647 25733905 -9173665 - L1ME2 LINE L1 -5192 1224 815 273 304 95 25 chr21 25736359 25736517 -9171053 - MIR SINE MIR -8 254 86 438 346 66 35 chr21 25737445 25738038 -9169532 + L2 LINE L2 1877 2487 -827 1964 132 3 0 chr21 25738232 25738530 -9169040 - AluSx SINE Alu -29 283 1 336 351 130 8 chr21 25738555 25738844 -9168726 + L2 LINE L2 2748 3064 -208 1205 193 79 11 chr21 25739375 25739655 -9167915 - AluJo SINE Alu 0 312 14 278 227 0 80 chr21 25739664 25739752 -9167818 - L1MC/D LINE L1 -2043 5765 5685 920 179 150 14 chr21 25739769 25739976 -9167594 + Tigger7 DNA MER2_type 32 266 -284 582 177 21 0 chr21 25739974 25740070 -9167500 + Tigger7 DNA MER2_type 2390 2487 0 380 286 34 8 chr21 25740070 25740189 -9167381 - L1MC/D LINE L1 -2121 5687 5566 624 309 93 51 chr21 25740364 25740503 -9167067 - L2 LINE L2 -86 3227 3095 722 253 188 28 chr21 25740503 25740891 -9166679 - MLT1J2 LTR MaLR 0 450 1 624 309 93 51 chr21 25740891 25741349 -9166221 - L2 LINE L2 -218 3095 2593 297 75 0 0 chr21 25742000 25742040 -9165530 + (CACCAT)n Simple_repeat Simple_repeat 3 42 0 216 67 0 0 chr21 25742902 25742932 -9164638 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 980 235 54 0 chr21 25747826 25748086 -9159484 - AluJo SINE Alu -1 311 38 387 284 61 20 chr21 25748353 25748501 -9159069 - MER5B DNA MER1_type -10 168 15 1886 141 17 0 chr21 25748559 25748856 -9158714 - AluSx SINE Alu -10 302 1 2288 55 0 14 chr21 25749680 25749973 -9157597 - AluY SINE Alu -7 304 16 268 271 0 0 chr21 25751393 25751452 -9156118 - L2 LINE L2 -10 3303 3245 238 304 9 27 chr21 25751712 25751824 -9155746 - L2 LINE L2 -759 2555 2446 182 278 67 11 chr21 25751861 25751951 -9155619 - L2 LINE L2 -1003 2311 2217 457 227 98 3 chr21 25752121 25752270 -9155300 + MER5A DNA MER1_type 14 178 0 1403 183 39 4 chr21 25752994 25753273 -9154297 - AluJb SINE Alu -23 289 1 2130 182 124 35 chr21 25753605 25754089 -9153481 + Cheshire DNA MER1_type 43 569 -1851 765 188 0 15 chr21 25754090 25754223 -9153347 + FLAM_C SINE Alu 3 133 -10 7801 169 55 42 chr21 25754251 25754759 -9152811 + Cheshire DNA MER1_type 586 1086 -1334 1991 137 0 3 chr21 25754759 25755052 -9152518 + AluSx SINE Alu 1 292 -20 7801 169 55 42 chr21 25755052 25755132 -9152438 + Cheshire DNA MER1_type 1086 1164 -1256 2454 133 8 3 chr21 25755132 25755494 -9152076 - THE1B LTR MaLR 0 364 1 7801 169 55 42 chr21 25755494 25756316 -9151254 + Cheshire DNA MER1_type 1164 2026 -394 1846 147 0 26 chr21 25756316 25756622 -9150948 + AluJb SINE Alu 1 298 -14 7801 169 55 42 chr21 25756622 25757006 -9150564 + Cheshire DNA MER1_type 2026 2404 -16 189 240 20 20 chr21 25757379 25757429 -9150141 - MIR SINE MIR -62 146 97 1675 149 0 52 chr21 25757634 25757963 -9149607 - AluJo SINE Alu 0 312 1 536 259 82 24 chr21 25757973 25758143 -9149427 + MIR SINE MIR 53 232 -30 811 226 17 0 chr21 25758627 25758804 -9148766 + MIR SINE MIR 66 245 -17 279 113 0 0 chr21 25759394 25759447 -9148123 + (GGGA)n Simple_repeat Simple_repeat 2 54 0 1585 142 0 82 chr21 25760183 25760499 -9147071 + AluJo SINE Alu 1 290 -22 2143 201 157 12 chr21 25760518 25761104 -9146466 - LTR51 LTR ERV1 0 671 1 209 237 0 40 chr21 25761573 25761649 -9145921 + CT-rich Low_complexity Low_complexity 4 76 0 438 270 55 30 chr21 25762094 25762331 -9145239 - L1MC5 LINE L1 -218 7743 7501 2123 82 0 0 chr21 25762373 25762643 -9144927 + AluSq SINE Alu 30 299 -14 635 311 16 52 chr21 25762654 25762960 -9144610 - L1M4 LINE L1 -1104 5042 4748 195 129 0 0 chr21 25763047 25763078 -9144492 + (CA)n Simple_repeat Simple_repeat 1 31 0 1155 128 49 15 chr21 25763917 25764120 -9143450 - L1PA14 LINE L1 -3 6158 5949 386 262 50 56 chr21 25764124 25764284 -9143286 - L1ME1 LINE L1 -59 6107 5946 1410 191 138 25 chr21 25764767 25765164 -9142406 + MLT1D LTR MaLR 7 448 -57 375 117 118 35 chr21 25765201 25765286 -9142284 + MLT1D LTR MaLR 349 504 -1 228 301 43 0 chr21 25765293 25765386 -9142184 - L2 LINE L2 -420 2894 2798 1303 152 0 9 chr21 25766144 25766361 -9141209 - AluJb SINE Alu -11 301 87 2329 93 0 17 chr21 25766448 25766713 -9140857 - L1P LINE L1 -2985 3161 2902 2187 218 36 18 chr21 25766713 25767217 -9140353 - LTR10D LTR ERV1 0 513 1 2329 93 0 17 chr21 25767217 25767304 -9140266 - L1P LINE L1 -3244 2902 2815 338 103 0 35 chr21 25767305 25767363 -9140207 + L1PA8 LINE L1 6115 6170 -2 1603 165 58 0 chr21 25767679 25767848 -9139722 - AluJb SINE Alu -4 308 113 423 0 0 0 chr21 25767848 25767895 -9139675 + (TTA)n Simple_repeat Simple_repeat 2 48 0 1603 165 58 0 chr21 25767895 25768016 -9139554 - AluJb SINE Alu -199 113 1 2133 107 0 16 chr21 25768276 25768585 -9138985 - AluSx SINE Alu -8 304 1 784 33 0 0 chr21 25768986 25769076 -9138494 - MER85 DNA T2_type 0 139 50 2110 124 15 11 chr21 25769126 25769507 -9138063 - L1PB1 LINE L1 -120 6031 5661 549 289 88 56 chr21 25769825 25770167 -9137403 - L1M4 LINE L1 -849 5297 4945 2168 125 25 14 chr21 25770258 25770611 -9136959 + MER46B DNA MER2_type 5 236 0 1328 209 111 60 chr21 25770661 25770911 -9136659 - L1MC5 LINE L1 -45 7916 7680 5233 82 5 54 chr21 25770911 25771688 -9135882 - L1PA10 LINE L1 -5 6163 5425 1328 209 111 60 chr21 25771688 25772021 -9135549 - L1MC5 LINE L1 -281 7680 7303 412 251 72 108 chr21 25772070 25772293 -9135277 - L1MC4 LINE L1 -2 8040 7826 803 213 84 18 chr21 25772330 25772555 -9135015 - L1ME2 LINE L1 -10 6154 5915 1535 253 31 16 chr21 25772573 25773119 -9134451 + L1ME LINE L1 2115 2668 -3478 470 234 101 0 chr21 25773143 25773331 -9134239 + L1ME LINE L1 2958 3164 -2982 511 186 0 0 chr21 25773332 25773418 -9134152 - AluJb SINE Alu -225 87 2 671 238 27 16 chr21 25773433 25773647 -9133923 + L1ME LINE L1 3438 3655 -2491 2669 213 20 23 chr21 25773695 25774358 -9133212 + L1ME LINE L1 4396 5056 -1090 966 156 17 33 chr21 25774414 25774594 -9132976 + FRAM SINE Alu 1 174 -2 361 264 25 37 chr21 25774604 25774767 -9132803 + L1ME LINE L1 5273 5433 -926 510 293 37 42 chr21 25774812 25775027 -9132543 + L1ME LINE L1 5440 5653 -511 1913 129 14 3 chr21 25775047 25775342 -9132228 + AluSx SINE Alu 1 298 -14 1870 136 0 0 chr21 25775480 25775759 -9131811 - AluJo SINE Alu -33 279 1 293 279 25 0 chr21 25777656 25777735 -9129835 + MIR3 SINE MIR 87 167 -41 265 284 108 20 chr21 25777919 25778021 -9129549 + L2 LINE L2 3142 3252 -20 4056 132 61 7 chr21 25778671 25779346 -9128224 - MER50 LTR ERV1 -22 712 2 3558 44 0 5 chr21 25779461 25779918 -9127652 - L1PA7 LINE L1 0 6154 5714 1832 147 0 0 chr21 25779918 25780197 -9127373 - AluSx SINE Alu -33 279 1 326 78 0 0 chr21 25780538 25780589 -9126981 - L1MB5 LINE L1 0 6174 6124 1427 173 71 18 chr21 25781236 25781572 -9125998 + Charlie1b DNA MER1_type 16 369 -154 496 246 31 17 chr21 25781963 25782222 -9125348 + MER89 LTR ERV1 1 361 -198 1497 190 113 11 chr21 25782300 25782653 -9124917 + MLT1C LTR MaLR 1 389 -78 1546 167 18 3 chr21 25783711 25783993 -9123577 - AluJo SINE Alu -18 294 9 978 145 32 77 chr21 25784020 25784184 -9123386 - AluJo SINE Alu -12 300 147 2388 61 0 0 chr21 25784184 25784479 -9123091 - AluY SINE Alu -16 295 1 978 145 32 77 chr21 25784479 25784535 -9123035 - AluJo SINE Alu -165 147 90 186 43 0 0 chr21 25785185 25785208 -9122362 + (CAA)n Simple_repeat Simple_repeat 2 24 0 363 316 37 42 chr21 25785455 25785645 -9121925 + MER5A DNA MER1_type 1 189 0 2391 115 14 6 chr21 25786373 25786720 -9120850 - THE1C LTR MaLR 0 375 26 1972 91 6 91 chr21 25786720 25787064 -9120506 + AluSq SINE Alu 1 357 0 253 143 0 0 chr21 25787064 25787106 -9120464 + (GAAAA)n Simple_repeat Simple_repeat 2 180 0 293 35 0 0 chr21 25787106 25787145 -9120425 - THE1A LTR MaLR -321 34 1 2066 108 0 7 chr21 25787886 25788181 -9119389 + AluSc SINE Alu 1 293 -16 945 167 89 0 chr21 25788492 25788672 -9118898 - MLT1D LTR MaLR -308 197 2 322 287 25 33 chr21 25789104 25789226 -9118344 - MLT1G LTR MaLR -421 169 49 2083 116 0 16 chr21 25789322 25789632 -9117938 - AluSx SINE Alu -7 305 1 267 289 13 0 chr21 25790508 25790584 -9116986 + MER91B DNA MER1_type 4 80 -110 1641 138 62 4 chr21 25790736 25791012 -9116558 - MLT1B LTR MaLR 0 390 99 970 143 30 6 chr21 25791027 25791195 -9116375 - AluJo SINE Alu -30 282 111 521 136 0 0 chr21 25791202 25791283 -9116287 - MLT1B LTR MaLR -309 81 1 188 289 58 29 chr21 25793336 25793440 -9114130 + MIR SINE MIR 77 183 -79 21 36 0 0 chr21 25793684 25793712 -9113858 + GC_rich Low_complexity Low_complexity 1 28 0 449 290 62 7 chr21 25794738 25794883 -9112687 - MIR SINE MIR -90 172 20 279 164 0 18 chr21 25795345 25795400 -9112170 - MER49 LTR ERV1 0 923 870 1418 87 14 10 chr21 25795415 25795623 -9111947 - AluSg/x SINE Alu -2 308 100 2680 127 55 4 chr21 25795647 25796206 -9111364 - MER51A LTR ERV1 0 634 1 713 164 0 0 chr21 25796206 25796316 -9111254 - FLAM_C SINE Alu -30 113 4 4566 162 34 62 chr21 25796317 25796929 -9110641 - MER49 LTR ERV1 -35 888 309 2680 132 172 35 chr21 25796929 25797469 -9110101 + LTR18B LTR ERVL 1 614 0 4566 162 34 62 chr21 25797469 25797770 -9109800 - MER49 LTR ERV1 -614 309 1 1861 112 3 81 chr21 25797915 25798237 -9109333 - AluSx SINE Alu -15 297 1 1997 144 3 0 chr21 25799675 25799980 -9107590 - AluJb SINE Alu -6 306 1 915 280 43 53 chr21 25800008 25800405 -9107165 - L2 LINE L2 0 3313 2921 921 172 107 71 chr21 25800410 25800473 -9107097 - L1M4 LINE L1 -4998 1544 1485 1771 169 3 0 chr21 25800473 25800769 -9106801 - AluJo SINE Alu -6 306 10 921 172 107 71 chr21 25800769 25800807 -9106763 - L1M4 LINE L1 -5057 1485 1450 1249 234 61 30 chr21 25800807 25801170 -9106400 + MLT1A2 LTR MaLR 1 374 0 921 172 107 71 chr21 25801170 25801405 -9106165 - L1M4 LINE L1 -5092 1450 1195 470 167 14 0 chr21 25801405 25801477 -9106093 + MER2 DNA MER2_type 1 73 -271 249 184 0 0 chr21 25801490 25801528 -9106042 - MER2 DNA MER2_type -25 319 282 1010 223 96 17 chr21 25801567 25801859 -9105711 - L1M4 LINE L1 -5346 1196 882 1143 247 81 0 chr21 25801849 25802145 -9105425 - L1M4 LINE L1 -6160 382 63 2161 80 3 45 chr21 25802241 25802554 -9105016 - AluSg SINE Alu -10 300 1 2918 134 5 5 chr21 25802779 25803213 -9104357 + MER57B LTR ERV1 1 434 0 1967 84 0 91 chr21 25803269 25803609 -9103961 + AluSc SINE Alu 1 312 0 944 113 0 0 chr21 25804035 25804168 -9103402 + FLAM_C SINE Alu 1 133 -10 777 184 84 45 chr21 25804713 25804892 -9102678 - MER5A DNA MER1_type 0 189 4 2602 194 102 39 chr21 25806397 25806912 -9100658 - MER69 DNA AcHobo -166 2360 1768 1813 152 3 10 chr21 25806912 25807214 -9100356 - AluJb SINE Alu -12 300 1 2602 194 102 39 chr21 25807214 25807554 -9100016 - MER69 DNA AcHobo -758 1768 1451 1107 241 11 15 chr21 25807608 25807882 -9099688 - AluJo SINE Alu -39 273 1 1032 266 59 0 chr21 25808169 25808425 -9099145 - MER69 DNA AcHobo -793 433 163 886 285 32 50 chr21 25808425 25808969 -9098601 - L1MCc LINE L1 -4890 1533 1343 2005 119 14 0 chr21 25808969 25809264 -9098306 - AluSc SINE Alu -10 299 1 886 285 32 50 chr21 25809264 25809485 -9098085 - L1MCc LINE L1 -5080 1343 1119 1943 150 9 32 chr21 25811268 25811608 -9095962 + MLT1B LTR MaLR 1 332 -58 2287 76 3 25 chr21 25811608 25811925 -9095645 + AluY SINE Alu 1 310 -1 320 250 152 0 chr21 25812979 25813071 -9094499 - L1MC4 LINE L1 -9 8033 7928 385 251 120 52 chr21 25813218 25813409 -9094161 - L1M4 LINE L1 -374 5804 5601 470 217 68 58 chr21 25813411 25813656 -9093914 - L1M4 LINE L1 -745 5401 5322 1750 151 28 3 chr21 25813656 25813947 -9093623 - AluJb SINE Alu -14 298 1 470 217 68 58 chr21 25813947 25814075 -9093495 - L1M4 LINE L1 -824 5322 5197 324 144 178 11 chr21 25814094 25814184 -9093386 - L1ME3 LINE L1 -6 6156 6052 863 253 74 60 chr21 25814156 25814482 -9093088 - L1ME3A LINE L1 -88 6082 5746 1875 141 0 0 chr21 25814482 25814799 -9092771 + AluSx SINE Alu 5 321 0 863 253 74 60 chr21 25814799 25814874 -9092696 - L1ME3A LINE L1 -424 5746 5674 392 219 125 25 chr21 25815380 25815540 -9092030 - L1M4 LINE L1 -2506 3640 3465 1367 257 64 44 chr21 25815563 25815972 -9091598 - L1M4 LINE L1 -2715 3431 3015 1187 201 43 0 chr21 25815981 25816259 -9091311 - L1M4 LINE L1 -3163 2983 2694 198 81 0 81 chr21 25816458 25816499 -9091071 + (TTTTTA)n Simple_repeat Simple_repeat 3 39 -20 1895 91 4 0 chr21 25816499 25816753 -9090817 - AluSg SINE Alu -55 255 1 198 81 0 81 chr21 25816753 25816773 -9090797 + (TTTTTA)n Simple_repeat Simple_repeat 39 59 0 1413 182 19 0 chr21 25816777 25817040 -9090530 - L1PB4 LINE L1 -5 6151 5884 535 244 48 30 chr21 25817504 25817672 -9089898 - L2 LINE L2 0 3313 3143 371 308 15 0 chr21 25817673 25817803 -9089767 - MLT1C LTR MaLR -6 368 237 3515 114 24 9 chr21 25817868 25818866 -9088704 - HERVH LTR ERV1 -3276 4437 3492 905 118 24 47 chr21 25818856 25819025 -9088545 - HERVH LTR ERV1 -4423 3290 3126 16050 94 9 19 chr21 25818997 25819355 -9088215 - HERVH LTR ERV1 -4726 2987 2627 2422 7 0 0 chr21 25819355 25819627 -9087943 + AluYa5 SINE Alu 39 310 -1 16050 94 9 19 chr21 25819627 25822036 -9085534 - HERVH LTR ERV1 -5086 2627 1 2749 87 92 5 chr21 25822039 25822451 -9085119 - LTR7 LTR ERV1 -2 448 1 491 133 133 0 chr21 25822465 25822563 -9085007 - MLT1C LTR MaLR -356 111 1 1220 182 89 32 chr21 25822933 25823066 -9084504 - AluJo SINE Alu -11 301 177 2347 132 22 0 chr21 25823066 25823431 -9084139 + MER83C LTR ERV1 1 373 0 1220 182 89 32 chr21 25823431 25823577 -9083993 - AluJo SINE Alu -135 177 6 2791 144 42 62 chr21 25824874 25825423 -9082147 + MER4B LTR ERV1 2 539 -71 4944 40 2 18 chr21 25826456 25827011 -9080559 + LTR10C LTR ERV1 1 547 -44 2225 91 3 3 chr21 25827011 25827320 -9080250 - AluY SINE Alu -2 309 1 4944 40 2 18 chr21 25827320 25827365 -9080205 + LTR10C LTR ERV1 547 591 0 2561 116 11 6 chr21 25827663 25828025 -9079545 - THE1B LTR MaLR 0 364 1 4380 136 45 9 chr21 25828827 25829562 -9078008 + Tigger2 DNA MER2_type 1 761 -1957 995 138 134 71 chr21 25829616 25829855 -9077715 + Tigger2 DNA MER2_type 2455 2708 -10 721 231 73 18 chr21 25829863 25830276 -9077294 - MLT1D LTR MaLR -40 465 2 278 268 21 31 chr21 25831121 25831218 -9076352 + CT-rich Low_complexity Low_complexity 2 97 0 1718 318 79 36 chr21 25831380 25832453 -9075117 - HERVL LTR ERVL -749 4905 3787 2191 190 14 16 chr21 25832526 25832957 -9074613 + MER63B DNA MER1_type 7 436 0 480 320 41 44 chr21 25832957 25833276 -9074294 - HERVL LTR ERVL -1777 3708 3391 404 324 106 0 chr21 25833577 25833747 -9073823 + MIR SINE MIR 68 255 -7 807 197 0 0 chr21 25834786 25835163 -9072407 + (TCCA)n Simple_repeat Simple_repeat 1 377 0 888 207 0 0 chr21 25835182 25835629 -9071941 + (TCCA)n Simple_repeat Simple_repeat 1 447 0 259 250 17 0 chr21 25837036 25837152 -9070418 + GA-rich Low_complexity Low_complexity 1 118 0 180 0 0 0 chr21 25837406 25837426 -9070144 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 0 0 0 chr21 25837426 25837450 -9070120 + AT_rich Low_complexity Low_complexity 1 24 0 834 174 0 0 chr21 25838282 25838397 -9069173 - FLAM_C SINE Alu -25 118 4 5980 204 31 27 chr21 25840204 25840315 -9067255 + L1MC1 LINE L1 2667 2776 -3557 1890 113 0 0 chr21 25840315 25840563 -9067007 + AluSx SINE Alu 57 304 -8 5980 204 31 27 chr21 25840563 25844024 -9063546 + L1MC1 LINE L1 2776 6326 -7 692 211 0 4 chr21 25844302 25844773 -9062797 + (TG)n Simple_repeat Simple_repeat 1 468 0 1333 14 0 0 chr21 25845184 25845332 -9062238 - AluYb8 SINE Alu -1 317 170 246 62 0 0 chr21 25846527 25846559 -9061011 + (TA)n Simple_repeat Simple_repeat 2 33 0 952 107 17 17 chr21 25846928 25847105 -9060465 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 435 38 0 0 chr21 25847107 25847160 -9060410 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 1993 139 3 7 chr21 25847160 25847462 -9060108 - AluSx SINE Alu -11 301 1 1741 181 19 13 chr21 25850178 25850487 -9057083 - MER58B DNA MER1_type 0 341 31 348 83 0 0 chr21 25853543 25853591 -9053979 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 192 125 0 0 chr21 25854404 25854436 -9053134 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 209 210 48 0 chr21 25854997 25855059 -9052511 + GA-rich Low_complexity Low_complexity 2 66 0 2044 134 3 13 chr21 25856070 25856376 -9051194 - AluSx SINE Alu -9 303 1 710 147 35 0 chr21 25856657 25856773 -9050797 - ORSL DNA AcHobo 0 275 156 5733 203 34 11 chr21 25857523 25859022 -9048548 + L1M4 LINE L1 503 2035 -4611 286 143 0 0 chr21 25859022 25859064 -9048506 - 5S rRNA rRNA -79 42 1 283 205 71 71 chr21 25859064 25859176 -9048394 + L1M4 LINE L1 2025 2136 -4510 2489 132 29 16 chr21 25859320 25859705 -9047865 + MLT1B LTR MaLR 1 390 0 216 0 0 0 chr21 25860077 25860101 -9047469 + (TG)n Simple_repeat Simple_repeat 1 24 0 302 355 73 8 chr21 25860258 25860382 -9047188 + L2 LINE L2 3136 3267 -5 1101 155 41 0 chr21 25860601 25860795 -9046775 - L1MA8 LINE L1 -12 6279 6078 316 314 89 24 chr21 25861020 25861144 -9046426 + L2 LINE L2 3136 3267 -5 268 250 42 21 chr21 25861455 25861551 -9046019 + L1ME LINE L1 73 170 -5900 270 238 0 16 chr21 25862067 25862130 -9045440 + L1ME LINE L1 329 390 -5680 1260 290 74 30 chr21 25862162 25863253 -9044317 + L1ME LINE L1 2749 3909 -2171 968 274 62 40 chr21 25863421 25863973 -9043597 + L1ME LINE L1 4092 4655 -1425 301 239 141 42 chr21 25864008 25864050 -9043520 + L1ME LINE L1 5601 5637 -459 2355 151 79 12 chr21 25864050 25864455 -9043115 + MSTB1 LTR MaLR 1 432 0 301 239 141 42 chr21 25864455 25864554 -9043016 + L1ME LINE L1 5637 5756 -340 22 0 0 0 chr21 25864617 25864639 -9042931 + AT_rich Low_complexity Low_complexity 1 22 0 2021 129 10 0 chr21 25864704 25864998 -9042572 - AluSx SINE Alu -15 297 1 2141 125 3 0 chr21 25865155 25865460 -9042110 - AluSx SINE Alu -6 306 1 1841 167 3 3 chr21 25865465 25865759 -9041811 - AluJb SINE Alu -18 294 1 1767 178 25 9 chr21 25865966 25866281 -9041289 - MLT2B2 LTR ERVL -190 325 6 414 323 90 0 chr21 25867445 25867600 -9039970 - MIR SINE MIR -13 249 81 1232 202 109 52 chr21 25867600 25867967 -9039603 + MLT1B LTR MaLR 1 388 -2 224 384 0 0 chr21 25867972 25868045 -9039525 - MIR SINE MIR -184 78 6 2209 121 0 0 chr21 25868092 25868389 -9039181 - AluSx SINE Alu -15 297 1 236 225 75 25 chr21 25869157 25869237 -9038333 + MER89 LTR ERV1 447 530 -29 746 226 146 64 chr21 25869329 25869629 -9037941 - L1MC4a LINE L1 -1473 6335 5996 1829 156 184 16 chr21 25869629 25869994 -9037576 + MSTB LTR MaLR 1 426 0 746 226 146 64 chr21 25869994 25870070 -9037500 - L1MC4a LINE L1 -1812 5996 5928 292 250 93 9 chr21 25870206 25870314 -9037256 + MIR SINE MIR 30 146 -62 320 192 27 41 chr21 25870724 25870797 -9036773 - Charlie4 DNA MER1_type -4 1957 1886 487 342 67 69 chr21 25871242 25871678 -9035892 - L2 LINE L2 0 3272 2838 627 355 39 15 chr21 25871983 25872442 -9035128 - L2 LINE L2 -944 2370 1901 4407 89 2 0 chr21 25873769 25874333 -9033237 + L1PA13 LINE L1 5595 6159 -4 1514 177 57 23 chr21 25875035 25875335 -9032235 + AluJb SINE Alu 1 310 -2 22 56 0 0 chr21 25876156 25876192 -9031378 + AT_rich Low_complexity Low_complexity 1 36 0 2380 55 3 19 chr21 25876603 25876915 -9030655 - AluY SINE Alu -4 307 1 1766 208 83 35 chr21 25877341 25877798 -9029772 + MER74A LTR ERVL 1 479 -79 2337 109 0 3 chr21 25878792 25879105 -9028465 + AluSx SINE Alu 1 312 0 2136 67 0 39 chr21 25879721 25880005 -9027565 - AluY SINE Alu -38 273 1 397 310 71 31 chr21 25880203 25880429 -9027141 + MIR SINE MIR 14 248 -14 836 318 74 31 chr21 25881202 25881781 -9025789 - L2 LINE L2 -456 2858 2255 951 319 81 46 chr21 25881912 25882551 -9025019 - L2 LINE L2 -1057 2257 1642 485 288 27 0 chr21 25882551 25882662 -9024908 + MER81 DNA DNA 1 114 0 951 319 81 46 chr21 25882662 25883252 -9024318 - L2 LINE L2 -1672 1642 943 189 0 0 0 chr21 25884048 25884069 -9023501 + (T)n Simple_repeat Simple_repeat 1 21 0 414 0 0 0 chr21 25885122 25885168 -9022402 + (TG)n Simple_repeat Simple_repeat 1 46 0 549 0 0 0 chr21 25885167 25885228 -9022342 + (GA)n Simple_repeat Simple_repeat 1 61 0 282 286 116 9 chr21 25888663 25888775 -9018795 - MIR3 SINE MIR -28 180 57 202 325 0 13 chr21 25889433 25889510 -9018060 + GA-rich Low_complexity Low_complexity 5 80 0 343 315 105 35 chr21 25889803 25890003 -9017567 + L1MEd LINE L1 4 217 -5902 621 209 15 0 chr21 25890372 25890506 -9017064 + Charlie2b DNA MER1_type 435 570 -2212 433 331 40 0 chr21 25890762 25890937 -9016633 + Charlie2b DNA MER1_type 787 968 -1814 1707 225 68 66 chr21 25891006 25891557 -9016013 + Charlie2a DNA MER1_type 1698 2252 -610 2264 61 3 22 chr21 25891557 25891870 -9015700 - AluY SINE Alu -4 307 1 1707 225 68 66 chr21 25891870 25892029 -9015541 + Charlie2a DNA MER1_type 2252 2409 -453 6468 74 7 13 chr21 25892034 25892910 -9014660 - L1PA10 LINE L1 0 6168 5298 1667 202 42 9 chr21 25892920 25893351 -9014219 + Charlie2a DNA MER1_type 2418 2862 0 680 266 33 22 chr21 25893372 25893647 -9013923 + L1MEd LINE L1 2151 2428 -3701 430 304 84 67 chr21 25893729 25894147 -9013423 + L1MEd LINE L1 2540 2964 -3165 567 290 60 9 chr21 25894354 25894702 -9012868 + L1MEd LINE L1 3198 3563 -2566 2366 70 3 3 chr21 25894735 25895037 -9012533 - AluY SINE Alu -8 303 2 315 306 12 82 chr21 25895042 25895212 -9012358 + MIR SINE MIR 105 262 0 396 307 7 22 chr21 25896351 25896488 -9011082 + MIR SINE MIR 61 195 -67 4022 80 43 48 chr21 25896488 25897114 -9010456 + SVA Other Other 764 1386 0 674 207 13 27 chr21 25897635 25897785 -9009785 - MER20 DNA MER1_type -71 148 1 1487 140 12 23 chr21 25898308 25898565 -9009005 - MLT1B LTR MaLR -136 254 1 3530 159 25 35 chr21 25898740 25899389 -9008181 + MER4E LTR ERV1 138 779 0 275 0 29 0 chr21 25899511 25899546 -9008024 + (TG)n Simple_repeat Simple_repeat 1 36 0 3243 231 22 28 chr21 25899727 25900425 -9007145 - L1M4 LINE L1 -908 5238 4545 1839 174 0 0 chr21 25900425 25900735 -9006835 + AluJb SINE Alu 1 310 -2 3243 231 22 28 chr21 25900735 25900945 -9006625 - L1M4 LINE L1 -1601 4545 4335 4572 179 10 17 chr21 25900945 25901765 -9005805 + MER21B LTR ERV1 1 814 -49 764 230 20 0 chr21 25901812 25902012 -9005558 - L1M4 LINE L1 -1807 4339 4136 323 289 82 41 chr21 25902012 25902223 -9005347 + MLT1L LTR MaLR 75 280 -335 182 36 0 36 chr21 25902679 25902707 -9004863 + (TTCCC)n Simple_repeat Simple_repeat 3 29 0 1151 209 0 0 chr21 25902709 25902934 -9004636 - AluJo SINE Alu 0 312 88 189 167 21 21 chr21 25903788 25903836 -9003734 - MER5B DNA MER1_type 0 178 131 583 208 9 0 chr21 25904177 25904283 -9003287 - MER81 DNA DNA -4 110 4 643 271 132 3 chr21 25904291 25904752 -9002818 + L2 LINE L2 2677 3204 -109 323 60 20 0 chr21 25904822 25904872 -9002698 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 252 0 0 0 chr21 25905808 25905836 -9001734 + (TGGGGG)n Simple_repeat Simple_repeat 2 29 0 211 241 205 0 chr21 25905889 25905972 -9001598 + MER5A DNA MER1_type 6 105 -84 877 204 50 0 chr21 25906607 25906808 -9000762 + MER20 DNA MER1_type 6 216 -3 216 200 0 0 chr21 25907421 25907466 -9000104 + CT-rich Low_complexity Low_complexity 3 47 0 490 251 0 8 chr21 25907632 25907883 -8999687 + (TCCA)n Simple_repeat Simple_repeat 1 248 0 507 187 0 0 chr21 25908549 25908656 -8998914 + (TGGA)n Simple_repeat Simple_repeat 3 109 0 194 339 15 0 chr21 25908730 25908795 -8998775 + MIR SINE MIR 12 77 -185 2139 188 95 0 chr21 25908799 25909293 -8998277 + MLT1F LTR MaLR 10 542 0 818 242 6 16 chr21 25909295 25909477 -8998093 + MIR SINE MIR 79 258 -4 1077 227 161 58 chr21 25910379 25910846 -8996724 + MLT2B2 LTR ERVL 1 515 0 659 244 23 17 chr21 25912059 25912235 -8995335 - MLT1D LTR MaLR 0 467 291 668 234 84 50 chr21 25912453 25912692 -8994878 - MLT1D LTR MaLR -258 247 1 217 328 0 0 chr21 25913375 25913436 -8994134 + CT-rich Low_complexity Low_complexity 3 63 0 2366 160 38 33 chr21 25914011 25914462 -8993108 - MLT1C LTR MaLR 0 467 15 344 284 32 41 chr21 25914728 25915066 -8992504 + L1ME LINE L1 4997 5331 -815 533 263 72 42 chr21 25915086 25915343 -8992227 + L1ME LINE L1 5373 5652 -469 2288 78 3 3 chr21 25915343 25915652 -8991918 + AluY SINE Alu 1 309 -2 2377 75 3 0 chr21 25916404 25916710 -8990860 - AluSx SINE Alu -5 307 1 198 118 0 0 chr21 25916953 25916987 -8990583 - MIR SINE MIR -76 132 99 183 377 26 9 chr21 25918415 25918529 -8989041 - MIR SINE MIR -127 135 20 2065 122 0 13 chr21 25920713 25921024 -8986546 - AluSg1 SINE Alu -2 307 1 1165 70 0 6 chr21 25922014 25922170 -8985400 + L1PA8 LINE L1 6018 6172 0 878 222 112 70 chr21 25924631 25925005 -8982565 + MLT1B LTR MaLR 1 390 0 3843 224 64 10 chr21 25925691 25926701 -8980869 + L1MC4 LINE L1 6760 7824 -218 982 149 0 12 chr21 25928474 25928642 -8978928 - AluJo/FRAM SINE Alu -13 299 134 1907 143 0 7 chr21 25928642 25928942 -8978628 - AluSx SINE Alu -14 298 1 437 145 66 0 chr21 25929036 25929112 -8978458 + MER58B DNA MER1_type 245 325 -16 215 262 143 0 chr21 25929112 25929196 -8978374 + L2 LINE L2 3168 3263 -50 266 287 119 0 chr21 25929996 25930097 -8977473 - L2 LINE L2 -20 3293 3181 214 284 95 47 chr21 25930171 25930319 -8977251 - L2 LINE L2 -222 3050 2896 365 342 45 38 chr21 25930421 25930670 -8976900 - L2 LINE L2 -560 2754 2508 642 220 92 6 chr21 25930670 25930843 -8976727 + MER91B DNA MER1_type 1 188 -2 365 342 45 38 chr21 25930843 25931260 -8976310 - L2 LINE L2 -806 2508 2063 447 312 69 7 chr21 25931448 25931592 -8975978 - L2 LINE L2 -1 3312 3160 542 330 112 26 chr21 25931706 25931893 -8975677 - L2 LINE L2 -422 2892 2668 2379 86 0 0 chr21 25931893 25932197 -8975373 + AluSx SINE Alu 1 304 -8 542 330 112 26 chr21 25932197 25932312 -8975258 - L2 LINE L2 -646 2668 2564 1277 301 114 50 chr21 25932352 25933483 -8974087 - L2 LINE L2 -829 2485 1282 246 62 0 0 chr21 25934597 25934629 -8972941 + (CAT)n Simple_repeat Simple_repeat 3 34 0 581 296 19 75 chr21 25935193 25935433 -8972137 + MIR SINE MIR 24 258 -4 308 321 15 45 chr21 25935546 25935680 -8971890 - MIR SINE MIR -100 162 33 720 284 94 29 chr21 25935818 25936202 -8971368 - MLT1I LTR MaLR 0 409 1 310 309 12 0 chr21 25936323 25936407 -8971163 + MLT1I LTR MaLR 63 147 -262 398 230 110 0 chr21 25936506 25936606 -8970964 + MLT1I LTR MaLR 299 409 0 358 200 14 0 chr21 25937360 25937430 -8970140 - MIR SINE MIR -92 170 100 2083 88 3 11 chr21 25939172 25939484 -8968086 + AluSp SINE Alu 1 310 0 254 310 58 0 chr21 25939600 25939687 -8967883 + MIR SINE MIR 54 145 -63 1327 206 76 44 chr21 25939982 25940418 -8967152 + L1MC5 LINE L1 7451 7900 -61 238 167 60 0 chr21 25942384 25942468 -8965102 + CT-rich Low_complexity Low_complexity 1 89 0 500 183 42 5 chr21 25942482 25942710 -8964860 + CT-rich Low_complexity Low_complexity 1 236 0 1877 159 47 31 chr21 25945503 25945887 -8961683 + MLT1B LTR MaLR 1 390 0 326 267 70 0 chr21 25945905 25945991 -8961579 + MIR SINE MIR 114 205 -57 1601 157 7 17 chr21 25946323 25946616 -8960954 - AluJo SINE Alu -12 300 11 1974 71 16 0 chr21 25948517 25948772 -8958798 + L1PA6 LINE L1 5896 6154 0 409 206 61 55 chr21 25949977 25950142 -8957428 + L1ME4a LINE L1 5956 6121 0 3711 149 23 14 chr21 25950612 25950636 -8956934 + L1MB4 LINE L1 5203 5225 -955 2804 10 0 0 chr21 25950636 25950950 -8956620 - AluYb8 SINE Alu -4 314 1 3711 149 23 14 chr21 25950950 25951625 -8955945 + L1MB4 LINE L1 5225 5906 -274 265 31 0 0 chr21 25951627 25951659 -8955911 + L1M3 LINE L1 5818 5849 -331 5811 162 32 6 chr21 25951869 25953862 -8953708 + L1PA16 LINE L1 4119 6155 -11 271 152 43 0 chr21 25954168 25954214 -8953356 - MER58 DNA MER1_type 0 2420 2373 1702 113 0 0 chr21 25955113 25955343 -8952227 + AluSg SINE Alu 58 287 -23 411 282 58 47 chr21 25955380 25955776 -8951794 + L1ME LINE L1 5418 5818 -346 516 312 35 61 chr21 25955799 25955840 -8951730 + L2 LINE L2 3008 3049 -264 2194 113 0 0 chr21 25955840 25956149 -8951421 - AluSq SINE Alu -4 309 1 516 312 35 61 chr21 25956149 25956418 -8951152 + L2 LINE L2 3049 3310 -3 201 154 0 0 chr21 25956524 25956563 -8951007 + (TG)n Simple_repeat Simple_repeat 2 40 0 313 242 166 40 chr21 25956738 25956798 -8950772 - L2 LINE L2 -1343 1971 1920 1330 216 101 34 chr21 25956798 25957234 -8950336 + MLT1C LTR MaLR 1 465 -2 313 242 166 40 chr21 25957234 25957396 -8950174 - L2 LINE L2 -1394 1920 1721 213 154 0 0 chr21 25957402 25957441 -8950129 + (TG)n Simple_repeat Simple_repeat 1 39 0 189 0 0 0 chr21 25957838 25957859 -8949711 + (CAA)n Simple_repeat Simple_repeat 1 21 0 2790 142 44 2 chr21 25957935 25958414 -8949156 + L1MB3 LINE L1 5682 6180 -3 228 205 0 0 chr21 25958621 25958660 -8948910 + (TG)n Simple_repeat Simple_repeat 1 39 0 1828 151 0 0 chr21 25959289 25959567 -8948003 - AluJo SINE Alu -34 278 1 636 295 26 10 chr21 25959638 25959831 -8947739 + MER91A DNA MER1_type 1 196 0 314 236 128 81 chr21 25959833 25959981 -8947589 - MIR3 SINE MIR -36 172 18 378 326 112 10 chr21 25960282 25960478 -8947092 + MIR SINE MIR 46 261 -1 219 304 0 0 chr21 25960811 25960857 -8946713 - L2 LINE L2 -16 3256 3211 294 328 74 8 chr21 25960854 25960976 -8946594 - MIR SINE MIR -83 179 50 303 104 0 0 chr21 25961044 25961092 -8946478 + (TG)n Simple_repeat Simple_repeat 2 49 0 408 208 201 50 chr21 25961395 25961554 -8946016 - MIR SINE MIR -10 252 70 475 248 68 43 chr21 25964428 25964589 -8942981 + MER63A DNA MER1_type 46 210 0 365 279 62 0 chr21 25964691 25964820 -8942750 - MER103 DNA DNA -19 147 11 339 280 50 0 chr21 25966097 25966197 -8941373 - L2 LINE L2 -16 3256 3152 763 193 0 0 chr21 25966297 25966442 -8941128 + L1MB5 LINE L1 5999 6143 -31 1035 209 34 4 chr21 25968994 25969262 -8938308 + MER33 DNA MER1_type 49 324 0 28 29 0 0 chr21 25969796 25969831 -8937739 + AT_rich Low_complexity Low_complexity 1 35 0 2835 115 42 40 chr21 25970076 25970671 -8936899 + MER4B LTR ERV1 1 779 0 537 311 40 43 chr21 25970825 25971150 -8936420 + L2 LINE L2 2033 2356 -958 2568 187 67 4 chr21 25971830 25972353 -8935217 - MER89 LTR ERV1 0 559 4 233 393 25 6 chr21 25972595 25972758 -8934812 + L2 LINE L2 2594 2759 -555 276 334 80 60 chr21 25972869 25973219 -8934351 + L2 LINE L2 2914 3270 -2 264 167 0 0 chr21 25973242 25973290 -8934280 + (TG)n Simple_repeat Simple_repeat 1 48 0 1675 186 73 37 chr21 25973345 25973727 -8933843 + MSTD LTR MaLR 1 396 0 2387 19 0 0 chr21 25973995 25974266 -8933304 + L1PA4 LINE L1 5882 6152 -3 1394 210 97 64 chr21 25974793 25975024 -8932546 + MLT1D LTR MaLR 1 223 -282 1520 175 16 22 chr21 25975024 25975217 -8932353 - AluJb SINE Alu 0 312 120 195 69 0 0 chr21 25975217 25975246 -8932324 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1520 175 16 22 chr21 25975246 25975366 -8932204 - AluJb SINE Alu -192 120 1 1394 210 97 64 chr21 25975366 25975619 -8931951 + MLT1D LTR MaLR 223 501 -4 498 244 74 15 chr21 25975638 25975773 -8931797 - L2 LINE L2 -3 3269 3127 1438 223 75 12 chr21 25975815 25976160 -8931410 - MLT1A2 LTR MaLR -7 367 1 197 366 20 10 chr21 25976424 25976525 -8931045 - MIR SINE MIR -73 189 88 347 185 15 0 chr21 25976638 25976703 -8930867 + L2 LINE L2 3207 3272 0 1729 200 44 42 chr21 25977421 25977876 -8929694 + MLT1D LTR MaLR 50 505 0 206 207 17 0 chr21 25978947 25979005 -8928565 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 6625 45 2 2 chr21 25980030 25980831 -8926739 + L1PA7 LINE L1 5350 6150 -4 298 309 29 86 chr21 25981734 25981873 -8925697 + L2 LINE L2 3142 3272 0 196 246 138 0 chr21 25987735 25987800 -8919770 - MIR SINE MIR -105 103 30 1582 146 32 7 chr21 25988589 25988869 -8918701 - AluJo SINE Alu -20 292 6 210 291 33 0 chr21 25988884 25988951 -8918619 - MIR SINE MIR -66 142 73 181 299 109 17 chr21 25989382 25989556 -8918014 + L2 LINE L2 2857 3046 -226 1791 234 64 22 chr21 25989675 25990219 -8917351 + MLT1F1 LTR MaLR 1 567 0 506 300 114 0 chr21 25990226 25990366 -8917204 - MIR SINE MIR -102 160 5 560 116 46 29 chr21 25991044 25991217 -8916353 + (TG)n Simple_repeat Simple_repeat 1 176 0 644 122 39 24 chr21 25991239 25991737 -8915833 + (TG)n Simple_repeat Simple_repeat 1 505 0 531 316 6 11 chr21 25992686 25992860 -8914710 + MER5B DNA MER1_type 3 175 -3 907 54 0 0 chr21 25993636 25993748 -8913822 - L1PA5 LINE L1 -175 5979 5868 1220 56 0 12 chr21 25993748 25993908 -8913662 + L1PA5 LINE L1 5996 6154 0 2077 116 10 0 chr21 25994327 25994621 -8912949 - AluSx SINE Alu -15 297 1 2815 182 125 66 chr21 25994899 25995302 -8912268 - MER63C DNA MER1_type -130 930 552 1083 159 13 69 chr21 25995302 25995534 -8912036 + MER20 DNA MER1_type 1 219 0 2815 182 125 66 chr21 25995534 25996007 -8911563 - MER63C DNA MER1_type -508 552 2 2087 150 9 35 chr21 25996649 25996995 -8910575 + MER1B DNA MER1_type 1 337 0 305 306 56 9 chr21 25997309 25997417 -8910153 - MIR3 SINE MIR -6 202 90 239 200 0 0 chr21 25997532 25997572 -8909998 + MER20 DNA MER1_type 180 219 0 550 158 87 16 chr21 25997573 25997700 -8909870 - MER63 DNA MER1_type -406 655 520 21 0 0 0 chr21 25997985 25998006 -8909564 + AT_rich Low_complexity Low_complexity 1 21 0 312 27 0 0 chr21 25999356 25999393 -8908177 + (TTA)n Simple_repeat Simple_repeat 3 39 0 259 170 0 0 chr21 25999571 25999624 -8907946 + ERVL-C1 LTR ERVL 562 614 -5150 1294 184 46 115 chr21 25999624 26000016 -8907554 + MLT1A1 LTR MaLR 1 365 0 657 259 102 21 chr21 26000099 26000335 -8907235 + ERVL-C1 LTR ERVL 727 981 -4673 2723 217 56 33 chr21 26000338 26001090 -8906480 + ERVL-C1 LTR ERVL 4990 5758 -6 1291 238 41 56 chr21 26001098 26001489 -8906081 + MLT2C1 LTR ERVL 13 397 0 288 227 67 0 chr21 26003224 26003299 -8904271 + MIR SINE MIR 49 128 -80 583 246 36 7 chr21 26004087 26004225 -8903345 + MIR SINE MIR 50 191 -71 18295 31 2 1 chr21 26004292 26007224 -8900346 - L1PA4 LINE L1 0 6155 3220 305 80 0 20 chr21 26008616 26008666 -8898904 + (TG)n Simple_repeat Simple_repeat 2 50 0 616 219 49 6 chr21 26008990 26009154 -8898416 - MER96B DNA MER1_type? -238 179 9 203 229 0 0 chr21 26009234 26009269 -8898301 + L2 LINE L2 3141 3175 -97 3009 132 9 57 chr21 26010048 26010614 -8896956 + L1MC2 LINE L1 5791 6329 -15 1351 79 0 11 chr21 26010633 26010823 -8896747 + L1MA2 LINE L1 6117 6304 0 24 32 0 0 chr21 26010823 26010854 -8896716 + AT_rich Low_complexity Low_complexity 1 31 0 543 281 64 6 chr21 26011508 26011679 -8895891 - MIR SINE MIR -1 261 81 2108 209 45 12 chr21 26011841 26012324 -8895246 + MLT1D LTR MaLR 4 502 -3 342 313 112 22 chr21 26012984 26013118 -8894452 - MIR3 SINE MIR -41 167 22 2388 126 9 3 chr21 26013199 26013549 -8894021 + THE1A LTR MaLR 4 355 0 1209 228 58 68 chr21 26013633 26014027 -8893543 + MLT1B LTR MaLR 1 390 0 383 169 135 0 chr21 26014379 26014468 -8893102 + MLT1C LTR MaLR 6 106 -361 1615 217 38 6 chr21 26015665 26016006 -8891564 + MLT1A1 LTR MaLR 1 352 -13 403 307 144 19 chr21 26016601 26016816 -8890754 + MIR SINE MIR 7 248 -14 1159 210 122 42 chr21 26018408 26018694 -8888876 + MLT1H LTR MaLR 12 320 -229 248 100 67 0 chr21 26018794 26018845 -8888725 + MLT1G LTR MaLR 542 590 0 232 217 0 22 chr21 26018999 26019045 -8888525 + MLT1J LTR MaLR 109 153 -358 1555 223 62 8 chr21 26019161 26019529 -8888041 + MLT1B LTR MaLR 3 390 0 803 258 9 24 chr21 26020326 26020539 -8887031 - MIR SINE MIR 0 262 53 838 194 0 0 chr21 26021731 26021901 -8885669 - L1MA4 LINE L1 -2 6298 6129 326 286 69 34 chr21 26022512 26022688 -8884882 - MIR SINE MIR -13 249 55 538 116 0 0 chr21 26023431 26023517 -8884053 + AluS SINE Alu 224 309 -2 258 304 118 10 chr21 26023639 26023741 -8883829 - MIR SINE MIR -136 126 14 376 208 0 0 chr21 26023921 26023998 -8883572 + MER112 DNA MER1_type 8 84 -176 189 195 0 0 chr21 26023998 26024039 -8883531 + (TG)n Simple_repeat Simple_repeat 1 41 0 234 224 112 52 chr21 26024045 26024161 -8883409 + MER112 DNA MER1_type 90 212 -48 895 245 23 31 chr21 26024196 26024453 -8883117 + MIR SINE MIR 6 260 -2 2394 56 17 3 chr21 26024544 26024846 -8882724 + L1PA8 LINE L1 5867 6172 0 2130 92 37 0 chr21 26025406 26025701 -8881869 + AluSq SINE Alu 1 306 -7 362 136 62 37 chr21 26025791 26025872 -8881698 - MIR SINE MIR -96 166 84 194 322 56 0 chr21 26026450 26026540 -8881030 + MIR3 SINE MIR 106 200 -8 2545 17 0 0 chr21 26026719 26027010 -8880560 - AluYb8 SINE Alu -1 317 27 1710 143 45 11 chr21 26027010 26027295 -8880275 - AluSx SINE Alu -15 297 1 440 341 44 19 chr21 26027996 26028116 -8879454 - MIR SINE MIR -29 233 24 2200 193 83 2 chr21 26028384 26028866 -8878704 + L1MB7 LINE L1 5649 6169 -15 2376 104 15 6 chr21 26028867 26029202 -8878368 - L1PA13 LINE L1 -7 6156 5819 234 262 49 16 chr21 26031909 26031970 -8875600 - MIR SINE MIR -89 119 57 1547 221 51 40 chr21 26032210 26032622 -8874948 + MLT1D LTR MaLR 1 403 -64 407 170 0 75 chr21 26032622 26032716 -8874854 - MLT1D LTR MaLR 0 505 419 3998 156 86 37 chr21 26033964 26034364 -8873206 + L1MB7 LINE L1 5310 5689 -495 3302 77 16 0 chr21 26034364 26034808 -8872762 - L1PA13 LINE L1 -3 6160 5710 3998 156 86 37 chr21 26034808 26035226 -8872344 + L1MB7 LINE L1 5689 6168 -16 1339 232 21 75 chr21 26035552 26035979 -8871591 + MLT1C LTR MaLR 64 467 0 297 256 117 67 chr21 26036257 26036437 -8871133 - MIR SINE MIR -18 244 56 1544 178 88 9 chr21 26037400 26037720 -8869850 + MER7A DNA MER2_type 1 343 -3 5819 24 0 5 chr21 26038814 26039479 -8868091 + L1PA4 LINE L1 5491 6152 -3 319 269 76 28 chr21 26040133 26040278 -8867292 - L1MC4a LINE L1 -1928 5880 5729 281 324 58 58 chr21 26040357 26040687 -8866883 - L1MC4a LINE L1 -2178 5630 5301 347 221 0 95 chr21 26040689 26040784 -8866786 + MER21B LTR ERV1 1 86 -777 2387 242 124 26 chr21 26040811 26041510 -8866060 + MER21B LTR ERV1 19 786 -77 23 33 0 0 chr21 26042060 26042090 -8865480 + AT_rich Low_complexity Low_complexity 1 30 0 9854 127 8 23 chr21 26042394 26044560 -8863010 + L1MA2 LINE L1 3674 5798 -506 2396 89 3 0 chr21 26044560 26044863 -8862707 + AluY SINE Alu 1 304 -7 9854 127 8 23 chr21 26044863 26045363 -8862207 + L1MA2 LINE L1 5798 6304 0 575 253 63 11 chr21 26046941 26047115 -8860455 + MIR SINE MIR 36 218 -44 530 282 68 11 chr21 26047145 26047322 -8860248 + MIR SINE MIR 5 191 -71 287 186 101 112 chr21 26047374 26047472 -8860098 - MIR SINE MIR -67 141 58 441 54 0 0 chr21 26048132 26048188 -8859382 + (TG)n Simple_repeat Simple_repeat 2 57 0 2856 104 116 14 chr21 26049505 26049742 -8857828 + LTR24C LTR ERV1 83 294 -341 1977 122 38 14 chr21 26049742 26050030 -8857540 - AluSq SINE Alu -18 295 1 2856 104 116 14 chr21 26050030 26050292 -8857278 + LTR24C LTR ERV1 294 633 -2 351 202 139 0 chr21 26050319 26050398 -8857172 - MER21B LTR ERV1 -130 733 644 586 185 86 31 chr21 26051138 26051300 -8856270 - L1MB5 LINE L1 0 6174 6004 1388 130 32 0 chr21 26051328 26051544 -8856026 - L1PA10 LINE L1 -1 6167 5945 299 139 0 0 chr21 26052221 26052264 -8855306 + 5S rRNA rRNA 1 43 -78 1314 173 25 8 chr21 26052824 26053061 -8854509 + L1M3e LINE L1 1 241 -6789 2309 143 86 23 chr21 26053205 26053346 -8854224 + L1MA7 LINE L1 5812 5943 -348 2256 135 13 24 chr21 26053346 26053725 -8853845 + THE1C LTR MaLR 1 375 0 2309 143 86 23 chr21 26053725 26054024 -8853546 + L1MA7 LINE L1 5943 6280 -11 321 218 77 0 chr21 26054317 26054395 -8853175 - MLT1D LTR MaLR -18 487 404 1875 96 74 66 chr21 26054446 26054809 -8852761 + THE1C LTR MaLR 1 366 -9 701 249 65 56 chr21 26054842 26055180 -8852390 - MLT1D LTR MaLR -164 341 1 2248 139 11 19 chr21 26055591 26055958 -8851612 - THE1B LTR MaLR 0 364 1 237 245 0 0 chr21 26057766 26057819 -8849751 + (CATATA)n Simple_repeat Simple_repeat 3 55 0 240 311 29 10 chr21 26057876 26057979 -8849591 - MIR SINE MIR -135 127 23 539 223 82 17 chr21 26060346 26060495 -8847075 + MER20 DNA MER1_type 1 151 -68 2300 92 0 0 chr21 26062951 26063257 -8844313 - AluSq SINE Alu 0 306 1 871 221 67 88 chr21 26063314 26063690 -8843880 + MLT1I LTR MaLR 42 409 0 315 0 0 0 chr21 26065747 26065782 -8841788 + (CCCTAA)n Simple_repeat Simple_repeat 6 40 0 7312 53 1 2 chr21 26065918 26066844 -8840726 + L1PA7 LINE L1 5229 6153 -1 2562 139 65 2 chr21 26068703 26069106 -8838464 + MSTA LTR MaLR 1 428 0 1881 150 36 20 chr21 26069735 26070041 -8837529 - AluSx SINE Alu -1 311 1 918 231 83 65 chr21 26071461 26071954 -8835616 - L1ME4a LINE L1 -67 6054 5553 188 214 0 54 chr21 26073592 26073648 -8833922 - L3 LINE CR1 -2 1575 1523 2180 110 3 3 chr21 26074007 26074299 -8833271 - AluSc SINE Alu -17 292 1 269 240 10 73 chr21 26075444 26075540 -8832030 + MIR SINE MIR 117 206 -56 468 0 0 0 chr21 26076296 26076348 -8831222 + (TG)n Simple_repeat Simple_repeat 1 52 0 32 43 0 0 chr21 26077068 26077114 -8830456 + AT_rich Low_complexity Low_complexity 1 46 0 548 320 44 20 chr21 26077114 26077364 -8830206 - MIR SINE MIR 0 262 7 350 186 18 18 chr21 26077650 26077763 -8829807 + GA-rich Low_complexity Low_complexity 2 114 0 2157 128 14 35 chr21 26080240 26080584 -8826986 + MER1B DNA MER1_type 1 337 0 2768 275 71 21 chr21 26081653 26082465 -8825105 + L1MDa LINE L1 19 871 -5669 5431 198 50 43 chr21 26082481 26084307 -8823263 + L1MDa LINE L1 939 2844 -3696 2212 162 38 7 chr21 26084307 26084734 -8822836 + L1MA4 LINE L1 5858 6297 -3 5431 198 50 43 chr21 26084734 26085106 -8822464 + L1MDa LINE L1 2844 3212 -3328 325 275 79 34 chr21 26086522 26086700 -8820870 + L1MC4 LINE L1 7857 8042 0 453 304 54 52 chr21 26087835 26088052 -8819518 + HAL1b LINE L1 16 236 -1112 2621 55 0 6 chr21 26088052 26088364 -8819206 + AluY SINE Alu 1 310 -1 453 304 54 52 chr21 26088364 26088570 -8819000 + HAL1b LINE L1 236 440 -908 412 342 19 0 chr21 26088571 26088729 -8818841 + HAL1b LINE L1 447 607 -741 315 236 11 22 chr21 26089137 26089226 -8818344 + L1MC4a LINE L1 5844 5931 -1877 25 0 0 0 chr21 26089231 26089256 -8818314 + AT_rich Low_complexity Low_complexity 1 25 0 396 0 0 0 chr21 26089430 26089474 -8818096 + (TA)n Simple_repeat Simple_repeat 1 44 0 495 299 96 30 chr21 26090249 26090795 -8816775 + L2 LINE L2 2518 3119 -194 686 280 18 18 chr21 26090839 26091064 -8816506 + MIR SINE MIR 32 256 -6 2456 152 5 0 chr21 26091116 26091504 -8816066 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr21 26093552 26093574 -8813996 + AT_rich Low_complexity Low_complexity 1 22 0 228 35 0 0 chr21 26093789 26093818 -8813752 + (T)n Simple_repeat Simple_repeat 1 29 0 1842 179 3 0 chr21 26094056 26094353 -8813217 - AluSx SINE Alu -14 298 1 842 158 0 0 chr21 26094814 26094947 -8812623 - FLAM_C SINE Alu 0 133 1 1048 215 33 21 chr21 26095692 26095934 -8811636 + L1 LINE L1 2539 2783 -3363 1006 241 35 72 chr21 26095948 26096296 -8811274 + MLT2C1 LTR ERVL 63 397 0 1086 228 60 35 chr21 26096798 26097197 -8810373 + LTR37A LTR ERV1 18 426 0 207 216 0 0 chr21 26099239 26099276 -8808294 - MIR SINE MIR -8 254 218 2065 117 61 22 chr21 26102660 26103019 -8804551 + THE1C LTR MaLR 1 373 -2 414 268 105 38 chr21 26103215 26103424 -8804146 - MIR SINE MIR -24 238 16 965 249 171 96 chr21 26103617 26104948 -8802622 + L2 LINE L2 1311 2741 -573 24 53 0 0 chr21 26105167 26105205 -8802365 + AT_rich Low_complexity Low_complexity 1 38 0 997 200 6 0 chr21 26105957 26106122 -8801448 - MER45A DNA AcHobo 0 178 13 565 278 6 17 chr21 26106172 26106345 -8801225 - MIR SINE MIR -70 192 22 30 77 0 0 chr21 26106532 26106597 -8800973 + AT_rich Low_complexity Low_complexity 1 65 0 282 305 49 0 chr21 26108860 26108942 -8798628 + L2 LINE L2 3116 3201 -71 387 0 0 0 chr21 26109658 26109701 -8797869 + (TG)n Simple_repeat Simple_repeat 1 43 0 210 37 0 0 chr21 26109703 26109730 -8797840 + (GA)n Simple_repeat Simple_repeat 2 28 0 1661 107 63 74 chr21 26109921 26110220 -8797350 + AluSx SINE Alu 1 296 -16 900 207 11 21 chr21 26111210 26111398 -8796172 - MLT1A2 LTR MaLR 0 374 189 222 37 0 0 chr21 26111414 26111441 -8796129 + (GA)n Simple_repeat Simple_repeat 1 27 0 521 271 60 0 chr21 26111460 26111616 -8795954 - FRAM SINE Alu 0 171 8 792 194 0 42 chr21 26111629 26111794 -8795776 - MLT1A2 LTR MaLR -216 158 1 347 331 61 22 chr21 26111902 26112083 -8795487 + L3 LINE CR1 1382 1569 -8 465 323 6 0 chr21 26112831 26112989 -8794581 + (TG)n Simple_repeat Simple_repeat 2 160 0 319 235 41 51 chr21 26113027 26113125 -8794445 + MIR SINE MIR 31 127 -81 603 231 151 5 chr21 26113156 26113342 -8794228 - MER58C DNA MER1_type -1 214 2 2010 222 114 5 chr21 26115279 26115842 -8791728 + MLT1E3 LTR MaLR 1 624 0 830 293 66 36 chr21 26117339 26117731 -8789839 - L2 LINE L2 0 3313 2910 1762 220 51 14 chr21 26119480 26119912 -8787658 - MLT1C LTR MaLR -14 453 6 2812 100 5 0 chr21 26120002 26120373 -8787197 - THE1C LTR MaLR -2 373 1 300 246 0 0 chr21 26121183 26121321 -8786249 + (CA)n Simple_repeat Simple_repeat 1 138 0 371 291 95 25 chr21 26122013 26122171 -8785399 - MER5B DNA MER1_type 0 178 10 2399 77 0 7 chr21 26122798 26123097 -8784473 - AluY SINE Alu -14 297 1 2121 132 0 0 chr21 26123153 26123449 -8784121 - AluSg SINE Alu -14 296 1 467 200 178 15 chr21 26124165 26124300 -8783270 + MER5A DNA MER1_type 32 188 -1 2306 94 7 7 chr21 26124326 26124624 -8782946 + AluSg1 SINE Alu 1 298 -11 723 239 0 0 chr21 26124885 26125015 -8782555 - FLAM_A SINE Alu -3 130 1 2655 154 21 5 chr21 26125870 26126291 -8781279 - MSTA LTR MaLR 0 428 1 1825 138 11 3 chr21 26128274 26128556 -8779014 + AluSg SINE Alu 27 310 0 271 227 13 13 chr21 26129345 26129420 -8778150 + CT-rich Low_complexity Low_complexity 1 75 0 581 278 9 35 chr21 26130023 26130250 -8777320 + L1ME LINE L1 5542 5762 -359 657 303 65 56 chr21 26130330 26130792 -8776778 - L2 LINE L2 -22 3291 2826 2536 125 28 0 chr21 26133083 26133435 -8774135 + THE1B LTR MaLR 1 362 -2 243 61 0 0 chr21 26133667 26133700 -8773870 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 308 0 27 0 chr21 26135405 26135442 -8772128 - MADE1 DNA Mariner -41 39 2 778 209 68 0 chr21 26136395 26136572 -8770998 - MER5A DNA MER1_type 0 189 1 744 321 45 43 chr21 26137468 26137842 -8769728 - L3 LINE CR1 -108 1469 1095 928 282 109 4 chr21 26138836 26139102 -8768468 + MLT1J1 LTR MaLR 6 299 -147 367 221 84 137 chr21 26139270 26139313 -8768257 - MIR SINE MIR -13 249 205 1975 137 7 13 chr21 26139313 26139613 -8767957 - AluSx SINE Alu -14 298 1 367 221 84 137 chr21 26139613 26139759 -8767811 - MIR SINE MIR -57 205 70 573 302 63 0 chr21 26139930 26140168 -8767402 + MLT1I LTR MaLR 140 392 -17 2325 99 0 0 chr21 26143481 26143785 -8763785 + AluSg SINE Alu 1 304 -6 390 21 0 0 chr21 26143952 26143999 -8763571 + (TG)n Simple_repeat Simple_repeat 1 47 0 23 0 0 0 chr21 26148979 26149002 -8758568 + AT_rich Low_complexity Low_complexity 1 23 0 3193 162 67 22 chr21 26149088 26149674 -8757896 + LTR9 LTR ERV1 1 612 0 4474 136 20 3 chr21 26149964 26150663 -8756907 + MER50 LTR ERV1 1 711 -23 514 270 80 31 chr21 26151499 26151725 -8755845 - LTR16A LTR ERVL 0 450 214 245 186 0 0 chr21 26151895 26151938 -8755632 + MIR SINE MIR 138 180 -82 2469 189 43 21 chr21 26151985 26152451 -8755119 - MER70B LTR ERVL -102 476 1 3498 65 0 7 chr21 26152647 26153075 -8754495 - L1PA8 LINE L1 -6 6166 5742 365 276 10 10 chr21 26153090 26153188 -8754382 - MLT1K LTR MaLR -314 274 177 213 39 0 0 chr21 26153801 26153827 -8753743 + (A)n Simple_repeat Simple_repeat 1 26 0 258 236 0 0 chr21 26153834 26153889 -8753681 - MIR3 SINE MIR -2 206 152 248 200 191 67 chr21 26154315 26154378 -8753192 + MIR SINE MIR 85 139 -123 2754 198 50 45 chr21 26154378 26154998 -8752572 - MLT1E3 LTR MaLR -1 623 1 248 200 191 67 chr21 26154998 26155039 -8752531 + MIR SINE MIR 139 202 -60 1062 214 113 22 chr21 26155092 26155321 -8752249 + MLT2F LTR ERVL 204 453 -210 315 0 0 0 chr21 26156121 26156156 -8751414 + (T)n Simple_repeat Simple_repeat 1 35 0 264 237 0 0 chr21 26156161 26156220 -8751350 + MLT1I LTR MaLR 537 595 0 292 279 12 0 chr21 26156227 26156313 -8751257 + MLT1I-int LTR MaLR 8 94 -1277 1737 150 7 34 chr21 26157352 26157645 -8749925 + AluJo SINE Alu 18 302 -10 332 153 0 14 chr21 26157645 26157717 -8749853 + GA-rich Low_complexity Low_complexity 1 71 0 228 233 17 0 chr21 26157798 26157858 -8749712 + MLT1D-int LTR MaLR 1654 1714 -21 892 331 7 17 chr21 26158124 26158426 -8749144 - ERVL LTR ERVL -2258 3506 3208 24 0 0 0 chr21 26159201 26159225 -8748345 + AT_rich Low_complexity Low_complexity 1 24 0 1153 205 56 7 chr21 26159402 26159704 -8747866 + L1ME1 LINE L1 4957 5273 -873 529 97 29 19 chr21 26159778 26159881 -8747689 + L1MA7 LINE L1 6187 6290 -1 1889 258 66 43 chr21 26159887 26160708 -8746862 + L1ME1 LINE L1 5317 6156 -10 540 299 24 18 chr21 26160728 26160895 -8746675 + L1MEc LINE L1 1631 1798 -4598 351 96 0 0 chr21 26160899 26160951 -8746619 + (TG)n Simple_repeat Simple_repeat 2 53 0 2568 260 27 14 chr21 26161295 26162038 -8745532 + L1MEc LINE L1 2180 2932 -3283 957 188 6 29 chr21 26162077 26162247 -8745323 - FRAM SINE Alu 0 166 1 1606 279 56 22 chr21 26162311 26163109 -8744461 + L1MEc LINE L1 3095 3934 -2281 1137 203 47 8 chr21 26163109 26163345 -8744225 + MLT1D LTR MaLR 1 245 -260 1905 152 63 30 chr21 26163370 26163733 -8743837 + THE1C LTR MaLR 1 375 0 2684 119 12 17 chr21 26163733 26163896 -8743674 + THE1C-int LTR MaLR 1 163 -1417 1093 83 122 6 chr21 26163896 26164052 -8743518 - L1PA11 LINE L1 -3 6171 5998 2684 119 12 17 chr21 26164052 26164348 -8743222 + THE1C-int LTR MaLR 163 405 -1175 2385 221 30 13 chr21 26164335 26164869 -8742701 + L1ME1 LINE L1 5615 6157 -9 273 128 0 0 chr21 26164893 26164940 -8742630 + (TAAAA)n Simple_repeat Simple_repeat 4 50 0 987 218 106 50 chr21 26164964 26165304 -8742266 + MLT2C1 LTR ERVL 13 371 -26 301 207 161 23 chr21 26165418 26165505 -8742065 + L2 LINE L2 3214 3312 -1 707 234 38 85 chr21 26165588 26165776 -8741794 - MER58A DNA MER1_type -2196 224 48 1688 165 9 37 chr21 26165776 26166097 -8741473 + AluJb SINE Alu 1 312 0 707 234 38 85 chr21 26166097 26166143 -8741427 - MER58A DNA MER1_type -2372 48 1 21 36 0 0 chr21 26167056 26167084 -8740486 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 26168003 26168026 -8739544 + AT_rich Low_complexity Low_complexity 1 23 0 2255 110 3 0 chr21 26168094 26168402 -8739168 + AluSc SINE Alu 1 309 0 2555 115 5 23 chr21 26168485 26168877 -8738693 + L1PB2 LINE L1 5767 6151 0 491 269 20 41 chr21 26168925 26169122 -8738448 + MIR SINE MIR 54 246 -16 2911 209 51 52 chr21 26169301 26170271 -8737299 - L1ME1 LINE L1 -7 6159 5197 3860 168 76 8 chr21 26170282 26171020 -8736550 - L1MC2 LINE L1 -15 6329 5542 2808 234 22 24 chr21 26171006 26171825 -8735745 - L1ME1 LINE L1 -920 5226 4410 1915 154 116 43 chr21 26171826 26172223 -8735347 - MSTC LTR MaLR -2 426 1 1875 107 72 38 chr21 26172228 26172519 -8735051 + AluSx SINE Alu 1 301 -11 3717 204 42 18 chr21 26172529 26173284 -8734286 - L1ME1 LINE L1 -1792 4354 3574 2579 40 10 0 chr21 26173284 26173583 -8733987 - AluY SINE Alu -9 302 1 3717 204 42 18 chr21 26173583 26173708 -8733862 - L1ME1 LINE L1 -2572 3574 3453 593 252 0 0 chr21 26174355 26174470 -8733100 - MER5A DNA MER1_type -3 186 72 471 323 71 54 chr21 26175452 26175802 -8731768 - L2 LINE L2 -3 3269 2914 498 326 6 0 chr21 26175804 26175979 -8731591 + (TG)n Simple_repeat Simple_repeat 1 176 0 772 138 16 0 chr21 26175983 26176106 -8731464 + MSTB LTR MaLR 1 125 -301 2225 120 3 39 chr21 26176108 26176441 -8731129 + MER1B DNA MER1_type 19 339 0 1802 137 68 0 chr21 26176441 26176731 -8730839 + MSTB LTR MaLR 117 426 0 474 244 0 0 chr21 26176734 26176890 -8730680 + (TG)n Simple_repeat Simple_repeat 1 156 0 234 0 0 0 chr21 26177682 26177708 -8729862 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1241 160 218 35 chr21 26178033 26178427 -8729143 - MER31B LTR ERV1 0 466 1 1445 186 0 0 chr21 26179239 26179487 -8728083 + L1MC1 LINE L1 5862 6109 -224 330 26 0 0 chr21 26179798 26179837 -8727733 + (TG)n Simple_repeat Simple_repeat 1 39 0 951 175 6 12 chr21 26179852 26180023 -8727547 + L1MC1 LINE L1 6164 6333 0 3095 219 9 37 chr21 26180169 26180462 -8727108 + MER82 DNA MER2_type 1 301 -352 2061 32 4 8 chr21 26180462 26180713 -8726857 - L1PA4 LINE L1 0 6155 5906 3095 219 9 37 chr21 26180713 26181091 -8726479 + MER82 DNA MER2_type 301 653 0 596 207 36 21 chr21 26181716 26181856 -8725714 - MER53 DNA DNA -46 143 2 337 200 27 0 chr21 26181921 26181996 -8725574 + MIR SINE MIR 67 143 -65 1094 275 36 0 chr21 26183171 26183451 -8724119 - L1M4 LINE L1 -1150 4996 4707 366 203 14 0 chr21 26183901 26183975 -8723595 + MER5A DNA MER1_type 1 75 -114 193 206 127 16 chr21 26183936 26183999 -8723571 - MER5A DNA MER1_type -24 165 96 187 244 0 0 chr21 26183977 26184018 -8723552 + MER5A DNA MER1_type 147 187 -2 338 322 14 7 chr21 26184264 26184407 -8723163 + MIR SINE MIR 89 232 -30 6493 172 13 31 chr21 26184460 26185217 -8722353 + MER21-int LTR ERV1 2488 3218 -973 3186 143 62 4 chr21 26185217 26185715 -8721855 - MER1A DNA MER1_type 0 527 1 6493 172 13 31 chr21 26185715 26186158 -8721412 + MER21-int LTR ERV1 3218 3667 -524 1192 74 0 0 chr21 26186158 26186306 -8721264 - L1P4 LINE L1 -468 5706 5559 1995 85 14 17 chr21 26186306 26186597 -8720973 + L1PA11 LINE L1 5881 6174 0 1747 181 3 51 chr21 26186653 26187006 -8720564 + MER21-int LTR ERV1 3715 4050 -141 502 119 114 0 chr21 26187015 26187115 -8720455 + MER21A LTR ERV1 373 576 -355 720 147 100 12 chr21 26187201 26187371 -8720199 - MER53 DNA DNA -4 185 1 808 175 75 96 chr21 26189014 26189262 -8718308 + L1ME1 LINE L1 5621 5864 -300 2165 125 3 0 chr21 26189262 26189566 -8718004 + AluSp SINE Alu 1 305 -8 808 175 75 96 chr21 26189566 26189597 -8717973 + L1ME1 LINE L1 5864 5894 -270 869 199 29 24 chr21 26189597 26189803 -8717767 - MER92B LTR ERV1 -2 634 428 841 177 25 0 chr21 26189885 26190043 -8717527 - MER92B LTR ERV1 -373 263 102 791 214 31 110 chr21 26190134 26190328 -8717242 + L1ME1 LINE L1 5892 6057 -109 1997 179 28 6 chr21 26190328 26190685 -8716885 - MLT1A1 LTR MaLR 0 365 1 791 214 31 110 chr21 26190685 26190780 -8716790 + L1ME1 LINE L1 6057 6158 -8 190 348 7 52 chr21 26190808 26190943 -8716627 + MIR SINE MIR 4 132 -130 189 107 0 0 chr21 26191291 26191319 -8716251 + (T)n Simple_repeat Simple_repeat 1 28 0 1669 149 10 3 chr21 26191675 26191970 -8715600 + L1MA4 LINE L1 5999 6295 -5 1053 269 87 43 chr21 26192313 26192433 -8715137 + L1MC4 LINE L1 7157 7270 -772 2417 67 23 7 chr21 26192433 26192732 -8714838 + AluSg SINE Alu 1 304 -6 1053 269 87 43 chr21 26192732 26193209 -8714361 + L1MC4 LINE L1 7270 7780 -262 25 51 0 0 chr21 26193225 26193264 -8714306 + AT_rich Low_complexity Low_complexity 1 39 0 2269 59 10 0 chr21 26193266 26193556 -8714014 - L1PA7 LINE L1 0 6154 5862 1378 78 0 0 chr21 26193559 26193739 -8713831 + L1P LINE L1 4875 5054 -1092 498 198 0 18 chr21 26193750 26193861 -8713709 + L1MC4 LINE L1 7804 7912 -130 397 221 16 31 chr21 26193908 26194035 -8713535 + L1MC4 LINE L1 7918 8042 0 2286 102 10 0 chr21 26194128 26194421 -8713149 + AluSx SINE Alu 1 296 -16 1123 201 13 4 chr21 26195127 26195356 -8712214 - MER76 LTR ERV -457 231 1 319 320 58 12 chr21 26196080 26196252 -8711318 + MIR SINE MIR 68 247 -15 285 146 0 0 chr21 26196295 26196343 -8711227 + (CA)n Simple_repeat Simple_repeat 1 48 0 570 319 25 5 chr21 26199434 26199638 -8707932 - MIR SINE MIR -41 221 14 442 0 35 0 chr21 26200140 26200198 -8707372 + (TG)n Simple_repeat Simple_repeat 1 60 0 442 238 122 39 chr21 26202648 26202829 -8704741 + MIR SINE MIR 67 262 0 318 127 0 84 chr21 26203262 26203333 -8704237 - MLT2B1 LTR ERVL 0 520 456 207 220 0 0 chr21 26203333 26203383 -8704187 + (CA)n Simple_repeat Simple_repeat 1 50 0 2129 193 25 74 chr21 26203398 26203886 -8703684 - MLT2B1 LTR ERVL -56 464 1 692 217 17 98 chr21 26204425 26204660 -8702910 - MLT2B1 LTR ERVL -140 380 165 2585 121 3 0 chr21 26204709 26205072 -8702498 + THE1B LTR MaLR 1 364 0 736 197 8 0 chr21 26205786 26205918 -8701652 + FLAM_C SINE Alu 1 133 0 2664 52 0 3 chr21 26206155 26206465 -8701105 - AluY SINE Alu -2 309 1 211 189 0 0 chr21 26207077 26207114 -8700456 + (CAAAG)n Simple_repeat Simple_repeat 3 39 0 222 265 199 49 chr21 26207152 26207439 -8700131 - L2 LINE L2 -2 3311 2982 1816 182 19 9 chr21 26207820 26208282 -8699288 + L1ME2 LINE L1 5151 5616 -548 1847 169 0 25 chr21 26208304 26208624 -8698946 - AluJb SINE Alu 0 312 1 1304 283 49 31 chr21 26208625 26209173 -8698397 + L1ME2 LINE L1 5605 6162 -2 700 266 38 60 chr21 26209184 26209552 -8698018 - L2 LINE L2 -1488 1826 1467 1412 310 91 27 chr21 26209566 26210354 -8697216 - L2 LINE L2 -2093 1221 383 2750 23 0 7 chr21 26211302 26211606 -8695964 - AluY SINE Alu -9 302 1 193 180 16 33 chr21 26212932 26212993 -8694577 + CT-rich Low_complexity Low_complexity 3 62 0 901 105 0 53 chr21 26212993 26213183 -8694387 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 848 210 77 96 chr21 26213908 26214099 -8693471 + MER110A LTR ERV1 35 228 -240 737 148 25 0 chr21 26214099 26214221 -8693349 - FLAM_A SINE Alu -7 126 2 848 210 77 96 chr21 26214221 26214468 -8693102 + MER110A LTR ERV1 228 465 -3 1296 233 50 43 chr21 26214542 26214958 -8692612 - LTR52 LTR ERVL -2 419 1 547 187 248 41 chr21 26215105 26215351 -8692219 - MER4C LTR ERV1 -20 445 149 1610 164 25 48 chr21 26215361 26215715 -8691855 - MER4A LTR ERV1 -318 346 1 1770 234 50 51 chr21 26215808 26216445 -8691125 + MLT1E3 LTR MaLR 17 624 0 603 153 0 0 chr21 26217356 26217487 -8690083 + (TATG)n Simple_repeat Simple_repeat 2 132 0 1482 139 11 68 chr21 26217651 26217874 -8689696 - MLT1B LTR MaLR -2 388 183 2195 100 10 3 chr21 26217874 26218164 -8689406 - AluSg SINE Alu -18 292 1 1482 139 11 68 chr21 26218164 26218221 -8689349 - MLT1B LTR MaLR -207 183 124 2101 121 53 5 chr21 26218221 26218597 -8688973 + LTR7 LTR ERV1 1 450 0 649 155 93 8 chr21 26218597 26218711 -8688859 - MLT1B LTR MaLR -261 129 5 1194 231 15 47 chr21 26219232 26219570 -8688000 + MLT1B LTR MaLR 64 390 0 362 194 28 0 chr21 26219662 26219734 -8687836 + MER110 LTR ERV1 404 477 -14 256 113 57 0 chr21 26220374 26220427 -8687143 + GA-rich Low_complexity Low_complexity 4 59 0 374 223 54 18 chr21 26220452 26220564 -8687006 - MLT1L LTR MaLR 0 615 500 1029 205 5 36 chr21 26220772 26220996 -8686574 - LTR68 LTR ERV1 -127 613 397 3906 62 0 10 chr21 26221001 26221503 -8686067 + L1PA7 LINE L1 5655 6151 -3 282 115 0 0 chr21 26221504 26221556 -8686014 + L1MC3 LINE L1 7580 7631 -154 236 159 0 16 chr21 26221654 26221717 -8685853 + (CA)n Simple_repeat Simple_repeat 2 63 0 192 200 0 0 chr21 26223347 26223387 -8684183 + (TA)n Simple_repeat Simple_repeat 1 40 0 662 203 39 0 chr21 26223846 26223974 -8683596 + MER58B DNA MER1_type 209 341 0 1825 198 37 27 chr21 26225170 26225579 -8681991 - MLT1C LTR MaLR -2 465 53 303 302 52 17 chr21 26226411 26226527 -8681043 + MIR SINE MIR 124 243 -19 23 33 0 0 chr21 26226762 26226792 -8680778 + AT_rich Low_complexity Low_complexity 1 30 0 902 185 54 0 chr21 26226885 26227069 -8680501 + MLT1C LTR MaLR 199 392 -75 1205 163 39 39 chr21 26227229 26227487 -8680083 - THE1C LTR MaLR 0 375 118 837 222 75 86 chr21 26227494 26227855 -8679715 - MLT1E2 LTR MaLR -265 361 5 499 330 95 46 chr21 26228952 26229628 -8677942 - L1 LINE L1 -1140 5006 4298 778 246 28 17 chr21 26229870 26230049 -8677521 + MLT1D LTR MaLR 1 181 -324 3969 214 51 24 chr21 26230917 26232254 -8675316 - L1MD1 LINE L1 -15 6227 4856 1499 182 0 0 chr21 26235211 26235469 -8672101 + L1M4 LINE L1 5413 5670 -514 755 277 93 62 chr21 26235553 26236194 -8671376 - L2 LINE L2 0 3272 2557 677 252 112 34 chr21 26236968 26237384 -8670186 - L2 LINE L2 -35 3278 2817 2026 136 3 3 chr21 26237503 26237797 -8669773 + AluSx SINE Alu 1 294 -18 4300 184 24 42 chr21 26237800 26238787 -8668783 + L1MB8 LINE L1 5209 6178 0 475 271 151 0 chr21 26238787 26238979 -8668591 - L2 LINE L2 -618 2696 2476 470 245 77 65 chr21 26240060 26240215 -8667355 + MIR SINE MIR 102 258 -4 1809 30 0 0 chr21 26240563 26240764 -8666806 + L1PA4 LINE L1 5952 6152 -3 245 299 29 7 chr21 26240915 26241052 -8666518 + (TTATA)n Simple_repeat Simple_repeat 3 142 0 509 239 28 45 chr21 26241285 26241461 -8666109 - L1MD3 LINE L1 -4 7991 7819 2191 76 0 0 chr21 26241534 26241798 -8665772 - AluSx SINE Alu -15 297 34 1802 67 0 0 chr21 26241808 26242032 -8665538 - AluY SINE Alu -11 300 77 1082 196 59 57 chr21 26244768 26245140 -8662430 - LTR52 LTR ERVL -3 418 46 1041 172 0 24 chr21 26245908 26246077 -8661493 - FRAM SINE Alu 0 166 2 312 243 22 103 chr21 26246103 26246239 -8661331 - MER5B DNA MER1_type -49 129 5 2353 132 22 19 chr21 26246548 26246911 -8660659 + THE1B LTR MaLR 1 364 0 12979 81 10 0 chr21 26246911 26248476 -8659094 + THE1B-int LTR MaLR 1 1580 0 2239 118 88 18 chr21 26248476 26248816 -8658754 + THE1B LTR MaLR 1 364 0 220 368 99 12 chr21 26249610 26249781 -8657789 - L2 LINE L2 -102 3170 2985 272 254 42 68 chr21 26250308 26250405 -8657165 + MIR SINE MIR 40 135 -127 1921 175 10 34 chr21 26250405 26250788 -8656782 - MLT1A2 LTR MaLR 0 374 1 272 254 42 68 chr21 26250788 26250808 -8656762 + MIR SINE MIR 135 154 -108 415 276 0 19 chr21 26251507 26251612 -8655958 + MER5A DNA MER1_type 4 106 -83 4807 171 40 3 chr21 26251673 26252005 -8655565 + L1MB2 LINE L1 5099 5417 -754 306 0 0 0 chr21 26252005 26252039 -8655531 + (CA)n Simple_repeat Simple_repeat 2 35 0 4807 171 40 3 chr21 26252039 26252708 -8654862 + L1MB2 LINE L1 5417 6171 0 2359 112 0 0 chr21 26252717 26253028 -8654542 + AluY SINE Alu 1 311 0 1255 215 137 60 chr21 26254094 26254563 -8653007 + MLT1D LTR MaLR 1 505 0 2772 19 7 0 chr21 26255680 26255989 -8651581 + AluY SINE Alu 1 311 0 2070 138 10 0 chr21 26258408 26258712 -8648858 + AluSq SINE Alu 1 307 -6 312 83 0 0 chr21 26258712 26258760 -8648810 + (GGA)n Simple_repeat Simple_repeat 1 48 0 182 206 0 0 chr21 26259159 26259193 -8648377 - L2 LINE L2 -16 3297 3264 234 253 154 22 chr21 26259215 26259306 -8648264 - MIR SINE MIR -124 138 36 188 0 0 69 chr21 26259793 26259822 -8647748 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 567 307 66 16 chr21 26259945 26260189 -8647381 + MLT1K LTR MaLR 79 334 -254 2639 34 0 0 chr21 26260615 26260910 -8646660 - AluY SINE Alu -16 295 1 4690 177 20 12 chr21 26262845 26263749 -8643821 - L1MB4 LINE L1 0 6180 5270 697 222 0 58 chr21 26264124 26264153 -8643417 - MER3 DNA MER1_type 5 167 138 1752 147 25 66 chr21 26264153 26264472 -8643098 + AluSx SINE Alu 1 306 -6 2190 96 3 0 chr21 26264472 26264778 -8642792 + AluY SINE Alu 1 307 0 697 222 0 58 chr21 26264778 26264917 -8642653 - MER3 DNA MER1_type -22 140 7 526 0 0 0 chr21 26264981 26265039 -8642531 - L1PA5 LINE L1 -181 5973 5916 1529 35 0 0 chr21 26265039 26265256 -8642314 + L1PA5 LINE L1 5981 6154 0 352 217 109 22 chr21 26265257 26265395 -8642175 + L1MDa LINE L1 2448 2597 -3943 816 234 77 7 chr21 26265488 26265774 -8641796 - L1MB4 LINE L1 -1663 4483 4178 23 0 0 0 chr21 26265774 26265797 -8641773 + AT_rich Low_complexity Low_complexity 1 23 0 253 323 0 21 chr21 26266356 26266452 -8641118 + LTR16B LTR ERVL 367 460 -4 226 329 129 0 chr21 26267234 26267319 -8640251 + LTR16C LTR ERVL 65 160 -331 476 296 0 0 chr21 26267384 26267509 -8640061 + LTR16C LTR ERVL 324 448 -43 426 307 33 0 chr21 26267559 26267712 -8639858 + MER103 DNA DNA 4 161 -5 327 25 0 0 chr21 26267742 26267782 -8639788 + (TG)n Simple_repeat Simple_repeat 1 40 0 225 163 0 0 chr21 26268663 26268712 -8638858 + GA-rich Low_complexity Low_complexity 2 50 0 817 219 151 76 chr21 26268770 26268829 -8638741 - Charlie7 DNA MER1_type -602 2010 1957 2132 133 10 0 chr21 26268829 26269138 -8638432 + AluSx SINE Alu 1 312 0 817 219 151 76 chr21 26269138 26269279 -8638291 - Charlie7 DNA MER1_type -655 1957 1828 1408 246 22 33 chr21 26269279 26269645 -8637925 + MLT1A1 LTR MaLR 4 365 0 817 219 151 76 chr21 26269645 26269945 -8637625 - Charlie7 DNA MER1_type -784 1828 1471 1764 236 87 21 chr21 26269945 26270419 -8637151 + MLT1E LTR MaLR 1 505 -88 203 119 48 0 chr21 26270435 26270477 -8637093 + L2 LINE L2 3106 3149 -164 1221 249 31 24 chr21 26270602 26270984 -8636586 - Charlie7 DNA MER1_type -1202 1410 1026 603 202 67 28 chr21 26271109 26271287 -8636283 - Charlie7 DNA MER1_type -1738 874 690 454 274 102 87 chr21 26271358 26271958 -8635612 + L2 LINE L2 2633 3270 -2 332 307 0 9 chr21 26271943 26272057 -8635513 - Charlie7 DNA MER1_type -1985 627 515 302 219 0 16 chr21 26272581 26272645 -8634925 - MLT1J LTR MaLR -343 168 106 2239 149 22 0 chr21 26273963 26274319 -8633251 - THE1B LTR MaLR 0 364 1 286 271 16 25 chr21 26274782 26274904 -8632666 + MIR SINE MIR 74 194 -68 2120 148 28 11 chr21 26275975 26276333 -8631237 + THE1B LTR MaLR 1 364 0 1479 199 20 7 chr21 26277036 26277342 -8630228 - L1MA3 LINE L1 0 6305 5996 258 268 0 14 chr21 26279209 26279280 -8628290 + (TATATG)n Simple_repeat Simple_repeat 1 71 -347 1900 106 3 70 chr21 26279280 26279606 -8627964 + AluSg SINE Alu 1 306 0 258 268 0 14 chr21 26279606 26279633 -8627937 + (TATATG)n Simple_repeat Simple_repeat 71 418 0 241 361 58 14 chr21 26279920 26280211 -8627359 + L1P5 LINE L1 5513 5816 -335 523 196 31 0 chr21 26281444 26281541 -8626029 + MLT2C1 LTR ERVL 3 102 -295 282 81 12 58 chr21 26281541 26281627 -8625943 + (TA)n Simple_repeat Simple_repeat 1 82 0 623 155 0 42 chr21 26281646 26281814 -8625756 + (TA)n Simple_repeat Simple_repeat 1 161 0 1195 197 28 35 chr21 26281827 26282111 -8625459 + MLT2C1 LTR ERVL 116 397 0 2207 108 0 0 chr21 26282489 26282775 -8624795 + AluSc SINE Alu 17 302 -7 261 282 12 0 chr21 26283045 26283130 -8624440 + (CA)n Simple_repeat Simple_repeat 1 86 0 297 0 0 0 chr21 26283149 26283182 -8624388 + (CA)n Simple_repeat Simple_repeat 1 33 0 1120 253 58 17 chr21 26285426 26285786 -8621784 - MLT1I LTR MaLR -32 377 3 328 239 98 0 chr21 26286868 26286960 -8620610 + MER5B DNA MER1_type 7 107 -71 2225 148 22 12 chr21 26286960 26287335 -8620235 + MLT2D LTR ERVL 1 474 -46 443 224 51 4 chr21 26287351 26287791 -8619779 + (TCTCTG)n Simple_repeat Simple_repeat 1 460 0 297 262 43 0 chr21 26287822 26287986 -8619584 + (TCTCTG)n Simple_repeat Simple_repeat 2 172 0 290 119 30 45 chr21 26287994 26288061 -8619509 + MLT2D LTR ERVL 450 515 0 237 246 15 0 chr21 26288076 26288141 -8619429 + MER5B DNA MER1_type 112 177 -1 1535 132 12 44 chr21 26288653 26288903 -8618667 + AluJo SINE Alu 48 289 -23 354 318 28 11 chr21 26289346 26289522 -8618048 + (TGG)n Simple_repeat Simple_repeat 2 180 0 651 150 12 31 chr21 26289527 26289687 -8617883 + (ATGGTG)n Simple_repeat Simple_repeat 3 159 0 193 216 20 0 chr21 26290672 26290723 -8616847 - L2 LINE L2 0 3313 3262 2086 92 11 0 chr21 26290865 26291138 -8616432 + AluSq SINE Alu 37 312 -1 184 29 29 29 chr21 26292255 26292289 -8615281 + (TTTTTG)n Simple_repeat Simple_repeat 1 34 0 676 180 56 25 chr21 26292295 26292456 -8615114 - AluJo SINE Alu -61 251 86 1302 185 0 0 chr21 26292456 26292661 -8614909 - AluJo SINE Alu -92 220 16 22 0 0 0 chr21 26293248 26293270 -8614300 + AT_rich Low_complexity Low_complexity 1 22 0 2048 107 68 41 chr21 26293302 26293667 -8613903 - THE1C LTR MaLR 0 375 1 1962 206 74 2 chr21 26293695 26294126 -8613444 - MLT1C LTR MaLR -1 466 5 991 175 13 81 chr21 26295889 26296123 -8611447 + MER20 DNA MER1_type 1 218 -1 1267 250 75 42 chr21 26296471 26296536 -8611034 - MLT1C LTR MaLR 0 467 406 2339 85 0 10 chr21 26296536 26296852 -8610718 + AluSc SINE Alu 1 309 0 1267 250 75 42 chr21 26296852 26297238 -8610332 - MLT1C LTR MaLR -61 406 1 268 194 171 62 chr21 26297814 26297943 -8609627 - MLT1B LTR MaLR -165 225 83 2202 118 7 0 chr21 26298056 26298345 -8609225 - AluSg SINE Alu -19 291 1 400 305 20 40 chr21 26298853 26299053 -8608517 + L2 LINE L2 3055 3250 -63 186 231 169 0 chr21 26299184 26299249 -8608321 + MIR SINE MIR 131 206 -56 832 205 47 28 chr21 26300816 26301031 -8606539 - MER20 DNA MER1_type 0 219 1 1456 256 128 20 chr21 26301966 26302419 -8605151 + MLT1E2 LTR MaLR 125 626 0 476 292 73 17 chr21 26302438 26302671 -8604899 - L2 LINE L2 -825 2489 2244 573 103 0 0 chr21 26302698 26302776 -8604794 + AluJb SINE Alu 47 124 -188 436 31 0 31 chr21 26302793 26302857 -8604713 + (GAA)n Simple_repeat Simple_repeat 3 64 0 328 155 0 27 chr21 26302874 26302948 -8604622 + AluJb SINE Alu 62 124 -178 397 48 0 32 chr21 26302956 26303018 -8604552 + (GAA)n Simple_repeat Simple_repeat 3 62 0 897 189 38 0 chr21 26303018 26303177 -8604393 + FRAM SINE Alu 1 164 -12 3393 183 18 6 chr21 26303647 26304424 -8603146 + L1MA4 LINE L1 4698 5484 -762 1141 84 0 7 chr21 26304430 26304584 -8602986 + L1PA10 LINE L1 6016 6168 0 3136 129 21 22 chr21 26304612 26305147 -8602423 + L1MA4 LINE L1 5468 6001 -299 257 79 34 157 chr21 26305178 26305216 -8602354 + L1MB3 LINE L1 6105 6127 -56 2040 95 54 20 chr21 26305216 26305511 -8602059 + AluSg SINE Alu 1 305 -5 257 79 34 157 chr21 26305511 26305561 -8602009 + L1MB3 LINE L1 6127 6182 -1 731 134 0 37 chr21 26305620 26305807 -8601763 + (GA)n Simple_repeat Simple_repeat 1 180 0 363 23 0 0 chr21 26306792 26306836 -8600734 + (CA)n Simple_repeat Simple_repeat 2 45 0 282 288 108 0 chr21 26307370 26307481 -8600089 - MIR SINE MIR -125 137 15 2396 88 0 0 chr21 26308407 26308702 -8598868 - AluSg SINE Alu -15 295 1 2033 121 3 14 chr21 26311287 26311584 -8595986 + AluSx SINE Alu 1 294 -18 1399 159 36 22 chr21 26313781 26314058 -8593512 - L1MD3 LINE L1 -5 7990 7710 2091 122 3 0 chr21 26314094 26314389 -8593181 - AluSq SINE Alu -17 296 1 316 161 18 0 chr21 26314477 26314533 -8593037 + L1MD3 LINE L1 7713 7769 -226 5723 239 59 54 chr21 26314522 26317007 -8590563 - L1MC4 LINE L1 -431 8029 5537 2209 145 0 0 chr21 26317007 26317317 -8590253 - AluSx SINE Alu -2 310 1 5723 239 59 54 chr21 26317317 26317332 -8590238 - L1MC4 LINE L1 -2923 5537 5524 592 259 18 12 chr21 26317337 26317507 -8590063 - L1MC4 LINE L1 -1031 5533 5363 3665 218 44 45 chr21 26317553 26318716 -8588854 - L1MC4 LINE L1 -1224 5340 4179 1454 230 133 72 chr21 26318945 26319532 -8588038 + MLT1E3 LTR MaLR 1 623 -1 840 149 0 15 chr21 26320032 26320166 -8587404 - MSTB1 LTR MaLR -300 132 1 579 170 0 0 chr21 26320191 26320291 -8587279 - MLT2D LTR ERVL -314 100 1 4796 34 0 0 chr21 26320729 26321314 -8586256 + L1PA3 LINE L1 5577 6161 0 25 0 0 0 chr21 26321324 26321349 -8586221 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr21 26325390 26325419 -8582151 + AT_rich Low_complexity Low_complexity 1 29 0 1358 195 98 18 chr21 26325930 26326268 -8581302 + MLT1A1 LTR MaLR 1 365 0 194 284 0 86 chr21 26326273 26326354 -8581216 + MIR SINE MIR 35 108 -154 2795 213 64 51 chr21 26327405 26329017 -8578553 - L1MC4 LINE L1 -4851 1194 1 222 118 0 0 chr21 26329480 26329514 -8578056 + (T)n Simple_repeat Simple_repeat 1 34 0 272 254 119 0 chr21 26329514 26329581 -8577989 - MIR SINE MIR -67 141 67 180 111 0 0 chr21 26329813 26329840 -8577730 + (A)n Simple_repeat Simple_repeat 1 27 0 283 320 91 43 chr21 26330282 26330513 -8577057 - L3 LINE CR1 -17 1560 1319 21 36 0 0 chr21 26333165 26333193 -8574377 + AT_rich Low_complexity Low_complexity 1 28 0 1987 140 7 0 chr21 26333198 26333490 -8574080 + AluSg SINE Alu 1 294 -16 301 284 66 54 chr21 26333581 26333930 -8573640 + L1M4 LINE L1 4516 4868 -1278 21 57 0 0 chr21 26334237 26334272 -8573298 + AT_rich Low_complexity Low_complexity 1 35 0 264 297 50 39 chr21 26334457 26334639 -8572931 + HAL1b LINE L1 356 539 -809 21 0 0 0 chr21 26334694 26334715 -8572855 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 26335376 26335412 -8572158 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr21 26335446 26335470 -8572100 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr21 26335675 26335719 -8571851 + AT_rich Low_complexity Low_complexity 1 44 0 491 141 0 24 chr21 26335791 26335876 -8571694 + MER61E LTR ERV1 372 454 -115 219 139 0 0 chr21 26335876 26335912 -8571658 + (A)n Simple_repeat Simple_repeat 1 36 0 442 276 52 0 chr21 26336278 26336394 -8571176 + L1M4 LINE L1 4868 4989 -1157 929 220 8 4 chr21 26336395 26336636 -8570934 + L1M4 LINE L1 5010 5251 -895 1539 158 11 21 chr21 26336636 26336821 -8570749 + MER1B DNA MER1_type 1 184 -2528 2033 91 21 129 chr21 26336821 26337241 -8570329 - THE1C LTR MaLR 0 375 1 1539 158 11 21 chr21 26337241 26337334 -8570236 + MER1B DNA MER1_type 184 276 -63 2658 241 61 22 chr21 26337427 26338323 -8569247 + L1MA10 LINE L1 5254 6334 0 2440 68 0 34 chr21 26338338 26338660 -8568910 + AluY SINE Alu 1 311 0 515 293 70 62 chr21 26339874 26340427 -8567143 + L1M4 LINE L1 2910 3467 -2679 5480 174 34 9 chr21 26340886 26342159 -8565411 - L1MC2 LINE L1 -6 6338 5030 2353 62 0 26 chr21 26342480 26342788 -8564782 + AluY SINE Alu 1 300 -11 1655 172 10 0 chr21 26342859 26343167 -8564403 + MER83C LTR ERV1 63 373 0 3972 205 57 14 chr21 26343176 26344120 -8563450 + MER83C-int LTR ERV1 40 1008 -3872 268 257 10 10 chr21 26344270 26344371 -8563199 + HERV17 LTR ERV1 8278 8378 -248 1438 198 48 21 chr21 26344351 26344685 -8562885 + HERV17 LTR ERV1 4527 4869 -11 807 210 94 83 chr21 26344687 26345059 -8562511 + MER83B LTR ERV1 3 378 0 743 233 0 2 chr21 26345480 26345939 -8561631 + (CTA)n Simple_repeat Simple_repeat 1 457 0 894 217 5 11 chr21 26346499 26346688 -8560882 + AluJo SINE Alu 3 190 -122 205 176 0 0 chr21 26346697 26346731 -8560839 + (TAG)n Simple_repeat Simple_repeat 2 35 0 224 94 0 0 chr21 26347610 26347642 -8559928 - MIR SINE MIR -106 156 125 400 311 77 81 chr21 26348633 26348833 -8558737 - MIR SINE MIR -1 261 61 2409 73 0 0 chr21 26348833 26349135 -8558435 - AluY SINE Alu -9 302 1 400 311 77 81 chr21 26349135 26349194 -8558376 - MIR SINE MIR -201 61 3 296 209 120 63 chr21 26349644 26349802 -8557768 + L1M4 LINE L1 2140 2306 -3840 1847 170 22 61 chr21 26349949 26350313 -8557257 - MLT2C1 LTR ERVL 0 397 49 2398 80 19 13 chr21 26350313 26350624 -8556946 + AluSq SINE Alu 1 313 0 1847 170 22 61 chr21 26350624 26350670 -8556900 - MLT2C1 LTR ERVL -348 49 3 587 175 36 15 chr21 26350781 26350918 -8556652 - LTR16A LTR ERVL -8 442 303 1851 196 39 7 chr21 26350921 26351334 -8556236 - LTR9 LTR ERV1 0 612 187 183 80 0 0 chr21 26351346 26351371 -8556199 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1115 95 0 0 chr21 26351374 26351522 -8556048 - AluSp SINE Alu -25 288 141 1144 103 5 32 chr21 26351553 26351738 -8555832 - LTR9 LTR ERV1 -432 180 1 190 200 0 25 chr21 26352109 26352149 -8555421 - L2 LINE L2 -1 3312 3274 2123 192 122 11 chr21 26352608 26353076 -8554494 - MLT2B1 LTR ERVL 0 520 1 415 274 84 17 chr21 26353188 26353367 -8554203 + LTR33 LTR ERVL 1 191 -330 778 210 32 18 chr21 26353445 26353664 -8553906 + LTR33 LTR ERVL 298 519 -2 1121 79 0 0 chr21 26354341 26354481 -8553089 + AluY SINE Alu 162 301 -10 21 110 0 0 chr21 26354485 26354576 -8552994 + AT_rich Low_complexity Low_complexity 1 91 0 3632 167 17 20 chr21 26354586 26355286 -8552284 - L1MB3 LINE L1 -9 6174 5477 273 256 23 23 chr21 26355551 26355637 -8551933 - L2 LINE L2 0 3313 3228 300 211 63 11 chr21 26356062 26356157 -8551413 + MER88 LTR ERVL 79 178 -286 886 209 83 20 chr21 26356075 26356329 -8551241 - MER74B LTR ERVL -77 545 276 28 29 0 0 chr21 26356329 26356364 -8551206 + AT_rich Low_complexity Low_complexity 1 35 0 234 0 0 0 chr21 26356425 26356451 -8551119 + (CA)n Simple_repeat Simple_repeat 2 27 0 1855 186 70 25 chr21 26357425 26357475 -8550095 - MLT2B2 LTR ERVL 0 515 469 1190 216 52 52 chr21 26357475 26357840 -8549730 + MLT1A1 LTR MaLR 1 365 0 1855 186 70 25 chr21 26357840 26358187 -8549383 - MLT2B2 LTR ERVL -46 469 100 1926 157 103 9 chr21 26358608 26359035 -8548535 + MLT1C LTR MaLR 1 467 0 203 244 103 64 chr21 26359858 26359936 -8547634 + L2 LINE L2 3197 3277 -36 190 279 51 0 chr21 26360027 26360106 -8547464 + MIR3 SINE MIR 104 186 -22 183 129 0 0 chr21 26360537 26360568 -8547002 + (TG)n Simple_repeat Simple_repeat 2 32 0 790 242 5 0 chr21 26361506 26361696 -8545874 + MER20 DNA MER1_type 29 219 0 334 160 13 13 chr21 26363410 26363485 -8544085 + (TA)n Simple_repeat Simple_repeat 1 75 0 23 0 0 0 chr21 26363489 26363512 -8544058 + AT_rich Low_complexity Low_complexity 1 23 0 1494 153 44 93 chr21 26363512 26363877 -8543693 - MLT2C1 LTR ERVL -50 347 1 1958 146 3 0 chr21 26364368 26364656 -8542914 - AluSx SINE Alu -23 289 1 258 125 0 0 chr21 26364720 26364768 -8542802 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 2042 124 3 3 chr21 26365305 26365615 -8541955 + AluSg SINE Alu 1 310 0 181 308 15 15 chr21 26366087 26366152 -8541418 + MIR SINE MIR 3 67 -195 290 305 119 8 chr21 26366235 26366353 -8541217 + MIR SINE MIR 108 238 -24 657 158 0 0 chr21 26366585 26366680 -8540890 + FLAM_A SINE Alu 30 124 -18 2192 59 48 0 chr21 26366866 26367116 -8540454 + AluY SINE Alu 15 298 -13 311 277 85 43 chr21 26368239 26368427 -8539143 + L1 LINE L1 3814 4009 -2137 186 103 0 0 chr21 26368431 26368460 -8539110 + (CAAAAA)n Simple_repeat Simple_repeat 1 29 0 868 249 91 30 chr21 26368704 26369033 -8538537 - LTR37A LTR ERV1 -3 423 75 347 204 65 11 chr21 26370481 26370574 -8536996 - MER45A DNA AcHobo -1 177 80 2203 153 138 5 chr21 26370790 26371168 -8536402 + MSTA LTR MaLR 1 428 0 453 259 51 25 chr21 26371796 26371954 -8535616 - MIR SINE MIR -88 174 13 3103 190 26 6 chr21 26372056 26372603 -8534967 - MER74A LTR ERVL 0 558 1 2444 246 58 34 chr21 26374191 26376088 -8531482 - L1MC1 LINE L1 0 6333 4242 898 285 83 19 chr21 26376089 26376464 -8531106 - L1MC1 LINE L1 -1916 4230 3832 1024 150 12 12 chr21 26376474 26376641 -8530929 - L1PA15 LINE L1 -3 6162 5996 1504 136 8 13 chr21 26376641 26376876 -8530694 + L1PA15 LINE L1 5757 5990 -175 962 218 0 71 chr21 26377300 26377525 -8530045 + MER58A DNA MER1_type 1 209 -15 1240 214 62 19 chr21 26378589 26378861 -8528709 + MLT2D LTR ERVL 91 379 -35 312 27 0 0 chr21 26378861 26378898 -8528672 + (CA)n Simple_repeat Simple_repeat 2 38 0 1240 214 62 19 chr21 26378898 26378933 -8528637 + MLT2D LTR ERVL 379 411 -3 1051 256 9 0 chr21 26379119 26379346 -8528224 + MIR SINE MIR 13 241 -21 398 341 81 23 chr21 26380844 26381017 -8526553 + MIR3 SINE MIR 19 201 -7 287 244 128 0 chr21 26381198 26381276 -8526294 + MIR SINE MIR 125 212 -50 658 270 120 42 chr21 26381949 26382282 -8525288 - L2 LINE L2 -20 3293 2935 1008 329 30 12 chr21 26382377 26382778 -8524792 - L2 LINE L2 -508 2806 2399 868 256 35 28 chr21 26383331 26383585 -8523985 - L2 LINE L2 -970 2344 2089 2183 117 3 0 chr21 26383607 26383906 -8523664 + AluSq SINE Alu 1 300 -13 254 290 151 0 chr21 26383978 26384071 -8523499 - L2 LINE L2 -1197 2117 2011 896 188 18 0 chr21 26384104 26384274 -8523296 - AluSg/x SINE Alu -3 307 135 5933 78 4 4 chr21 26384282 26384294 -8523276 - L1PA10 LINE L1 -8 6160 6149 198 0 0 0 chr21 26384294 26384316 -8523254 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 5933 78 4 4 chr21 26384316 26385074 -8522496 - L1PA10 LINE L1 -18 6150 5390 863 204 5 73 chr21 26391114 26391216 -8516354 + MER45A DNA AcHobo 1 86 -1495 2174 131 0 0 chr21 26391216 26391521 -8516049 - AluSx SINE Alu -7 305 1 863 204 5 73 chr21 26391521 26391609 -8515961 + MER45A DNA AcHobo 86 178 0 333 311 19 50 chr21 26391617 26391778 -8515792 + MIR SINE MIR 9 164 -98 1546 176 11 4 chr21 26392415 26392676 -8514894 - AluJb SINE Alu -49 263 1 360 221 21 32 chr21 26392933 26393028 -8514542 + MER103 DNA DNA 66 159 -7 435 246 0 0 chr21 26393371 26393513 -8514057 + CT-rich Low_complexity Low_complexity 3 144 0 232 346 40 20 chr21 26393905 26394006 -8513564 - MIR SINE MIR -85 123 21 2805 157 32 6 chr21 26394382 26394848 -8512722 + L1PA16 LINE L1 5684 6161 -5 787 248 59 14 chr21 26396816 26397038 -8510532 - MIR SINE MIR -25 237 6 888 194 28 60 chr21 26397064 26397280 -8510290 + MER20 DNA MER1_type 6 214 -5 265 245 16 69 chr21 26397749 26397937 -8509633 + (CATTA)n Simple_repeat Simple_repeat 3 180 0 262 287 81 0 chr21 26399489 26399576 -8507994 - MIR3 SINE MIR -48 160 67 351 207 73 12 chr21 26399988 26400070 -8507500 + MER94 DNA DNA 2 88 -46 730 261 5 21 chr21 26400958 26401146 -8506424 - MIR SINE MIR -5 257 73 321 123 82 41 chr21 26401931 26402004 -8505566 - MER20 DNA MER1_type -48 171 96 3280 121 6 56 chr21 26402009 26402360 -8505210 - LTR26B LTR ERV1 0 531 215 2515 67 0 0 chr21 26402360 26402659 -8504911 - AluY SINE Alu -12 299 1 3280 121 6 56 chr21 26402659 26402846 -8504724 - LTR26B LTR ERV1 -316 215 20 1473 181 161 53 chr21 26403732 26404186 -8503384 + MLT1E1 LTR MaLR 3 505 -149 2474 216 50 29 chr21 26404277 26404822 -8502748 + MER74A LTR ERVL 3 558 0 24 32 0 0 chr21 26405496 26405527 -8502043 + AT_rich Low_complexity Low_complexity 1 31 0 416 319 24 39 chr21 26406411 26406618 -8500952 + L2 LINE L2 3109 3312 -1 313 327 10 0 chr21 26406618 26406722 -8500848 + GA-rich Low_complexity Low_complexity 1 105 0 320 269 51 40 chr21 26406797 26406972 -8500598 + MIR SINE MIR 84 260 -2 569 183 0 0 chr21 26407112 26407194 -8500376 - AluJ/FLAM SINE Alu -229 83 2 859 150 0 11 chr21 26408213 26408393 -8499177 + (GGA)n Simple_repeat Simple_repeat 3 180 0 508 28 0 75 chr21 26408385 26408492 -8499078 + (GAA)n Simple_repeat Simple_repeat 1 99 0 252 271 82 53 chr21 26409172 26409342 -8498228 - L2 LINE L2 -192 3080 2906 328 309 94 22 chr21 26410149 26410330 -8497240 - MIR SINE MIR -59 203 10 561 231 120 83 chr21 26410517 26410759 -8496811 - MIR SINE MIR -6 256 6 714 314 75 53 chr21 26411134 26411891 -8495679 + L1ME LINE L1 466 1239 -5291 285 264 76 24 chr21 26411949 26412199 -8495371 + L1ME LINE L1 2365 2627 -3913 286 139 0 0 chr21 26412202 26412245 -8495325 - MLT2D LTR ERVL -4 393 351 198 0 0 0 chr21 26412260 26412282 -8495288 + (GA)n Simple_repeat Simple_repeat 1 22 0 2045 185 15 26 chr21 26412285 26412674 -8494896 - MLT2D LTR ERVL -20 394 10 382 200 33 33 chr21 26414134 26414224 -8493346 + L1MB7 LINE L1 4903 4992 -1154 1689 16 0 0 chr21 26414219 26414407 -8493163 - L1PA4 LINE L1 -209 5946 5759 1604 28 0 0 chr21 26414407 26414583 -8492987 + L1PA4 LINE L1 5976 6152 -3 4908 171 39 7 chr21 26414586 26414718 -8492852 + L1MB7 LINE L1 4989 5115 -1069 261 0 0 0 chr21 26414718 26414747 -8492823 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 4908 171 39 7 chr21 26414747 26415711 -8491859 + L1MB7 LINE L1 5115 6175 -9 624 280 28 12 chr21 26415919 26416240 -8491330 + L1ME LINE L1 3477 3802 -2738 738 113 0 19 chr21 26417180 26417286 -8490284 - U13 snRNA snRNA 0 104 1 5099 26 2 0 chr21 26418500 26419157 -8488413 - L1P1 LINE L1 -690 5465 4803 3594 3 0 0 chr21 26419157 26419530 -8488040 + L1PA2 LINE L1 5779 6152 -3 958 179 15 35 chr21 26419682 26419883 -8487687 + MER58A DNA MER1_type 28 224 0 2723 253 48 14 chr21 26419884 26420627 -8486943 + L1ME3 LINE L1 5352 6120 -42 328 221 115 0 chr21 26422044 26422166 -8485404 + Charlie4 DNA MER1_type 1762 1897 -64 2193 146 12 0 chr21 26422168 26422510 -8485060 - MLT1B LTR MaLR -1 389 44 2021 122 0 61 chr21 26422518 26422870 -8484700 - AluSx SINE Alu 0 312 1 6309 113 25 0 chr21 26422874 26423804 -8483766 - L1PA15 LINE L1 0 6165 5237 2678 152 22 0 chr21 26423804 26424204 -8483366 + MSTA LTR MaLR 20 428 0 4399 180 22 6 chr21 26424204 26425083 -8482487 - L1PA15 LINE L1 -903 5243 4351 327 155 95 24 chr21 26425611 26425695 -8481875 - MIR SINE MIR -13 249 160 248 155 31 52 chr21 26426412 26426509 -8481061 + (TTTA)n Simple_repeat Simple_repeat 2 96 0 15426 174 23 12 chr21 26426531 26430529 -8477041 - L1PB1 LINE L1 0 6867 2826 2348 99 11 3 chr21 26430533 26430885 -8476685 - L1PB1 LINE L1 -4080 2783 2429 2954 111 15 0 chr21 26430885 26431292 -8476278 + MLT2A2 LTR ERVL 1 413 -40 984 109 4 0 chr21 26431293 26431561 -8476009 + (TCTA)n Simple_repeat Simple_repeat 1 269 0 350 25 0 0 chr21 26431561 26431601 -8475969 + MLT2A2 LTR ERVL 414 453 0 6380 140 11 6 chr21 26431601 26433171 -8474399 - L1PB1 LINE L1 -4453 2410 616 2422 224 27 4 chr21 26433181 26433734 -8473836 - L1PB1 LINE L1 -6292 571 6 682 150 0 53 chr21 26437138 26437325 -8470245 + (TCTCC)n Simple_repeat Simple_repeat 4 180 0 596 204 17 12 chr21 26437355 26437527 -8470043 + CT-rich Low_complexity Low_complexity 1 173 0 774 137 11 38 chr21 26437514 26437697 -8469873 + C-rich Low_complexity Low_complexity 3 180 0 287 231 0 39 chr21 26437697 26437775 -8469795 + CT-rich Low_complexity Low_complexity 4 78 0 25 65 0 0 chr21 26438631 26438677 -8468893 + AT_rich Low_complexity Low_complexity 1 46 0 1762 241 40 30 chr21 26439209 26439711 -8467859 + L1MC4 LINE L1 7308 7814 -228 1340 226 84 31 chr21 26440130 26440546 -8467024 - MLT1C LTR MaLR -29 438 1 485 258 8 23 chr21 26441579 26441711 -8465859 + MIR SINE MIR 6 135 -127 2014 131 51 46 chr21 26441711 26442084 -8465486 + THE1C LTR MaLR 1 375 0 306 297 102 8 chr21 26444999 26445117 -8462453 - MER5A DNA MER1_type -57 132 4 1839 221 84 7 chr21 26445569 26445999 -8461571 - MLT1C LTR MaLR 0 467 5 1408 174 57 8 chr21 26447683 26447948 -8459622 + AluJo SINE Alu 25 302 -10 2904 0 0 6 chr21 26448167 26448503 -8459067 - AluYa5 SINE Alu 0 334 1 2599 111 18 8 chr21 26449421 26449816 -8457754 + L1PA14 LINE L1 5660 6058 -103 3917 104 7 21 chr21 26449829 26450408 -8457162 + LTR4 LTR ERV1 26 596 0 760 95 0 0 chr21 26450408 26450513 -8457057 + L1PA14 LINE L1 6055 6159 -2 480 222 40 51 chr21 26452165 26452341 -8455229 - MER4A-int LTR ERV1 -6315 283 110 1688 143 6 31 chr21 26452443 26452781 -8454789 - MER4A LTR ERV1 -17 647 261 271 157 20 20 chr21 26452776 26452827 -8454743 - MER4A LTR ERV1 -560 104 54 890 234 37 32 chr21 26452916 26453134 -8454436 + MER20 DNA MER1_type 1 219 0 1562 174 55 27 chr21 26453210 26453577 -8453993 - L1MB8 LINE L1 -1 6413 6037 1164 206 14 52 chr21 26453594 26453885 -8453685 - LTR4 LTR ERV1 0 596 317 285 238 16 0 chr21 26453901 26453964 -8453606 - LTR4 LTR ERV1 -239 357 294 7227 90 1 3 chr21 26454115 26455035 -8452535 - HERV3 LTR ERV1 0 8426 7509 18836 106 5 6 chr21 26455028 26457559 -8450011 - HERV3 LTR ERV1 -2126 6300 3774 9711 135 17 8 chr21 26457530 26458955 -8448615 - HERV3 LTR ERV1 -6987 1439 2 1197 158 38 76 chr21 26458955 26459246 -8448324 - LTR4 LTR ERV1 0 596 317 272 254 16 0 chr21 26459262 26459325 -8448245 - LTR4 LTR ERV1 -239 357 294 2531 213 30 14 chr21 26459461 26460248 -8447322 - L1MB8 LINE L1 -400 6020 5220 9160 229 45 35 chr21 26460254 26463168 -8444402 - L1MB8 LINE L1 -1256 5126 2180 453 264 16 0 chr21 26463174 26463295 -8444275 + L1M4 LINE L1 3244 3366 -2780 325 273 107 44 chr21 26463298 26463503 -8444067 - L1MEc LINE L1 -4356 2040 1823 1543 86 101 0 chr21 26463721 26463930 -8443640 - MER30 DNA MER1_type 0 230 1 2163 128 0 0 chr21 26464823 26465128 -8442442 + AluSx SINE Alu 1 305 -7 1140 184 39 29 chr21 26466692 26467051 -8440519 - LTR52 LTR ERVL -19 402 1 209 189 0 0 chr21 26467473 26467535 -8440035 + (CAA)n Simple_repeat Simple_repeat 1 62 0 2091 131 3 10 chr21 26471236 26471541 -8436029 + AluSx SINE Alu 1 303 -9 301 298 48 0 chr21 26472391 26472495 -8435075 + L2 LINE L2 3198 3306 -7 231 303 57 14 chr21 26472554 26472659 -8434911 + MIR SINE MIR 50 157 -51 1089 219 5 31 chr21 26472931 26472994 -8434576 - MER58A DNA MER1_type -2199 221 158 2171 90 32 0 chr21 26472994 26473273 -8434297 - AluSq SINE Alu -25 288 1 1089 219 5 31 chr21 26473273 26473433 -8434137 - MER58A DNA MER1_type -2262 158 4 547 253 72 18 chr21 26474790 26474956 -8432614 + MER5B DNA MER1_type 4 178 0 713 183 11 17 chr21 26475112 26475292 -8432278 + GA-rich Low_complexity Low_complexity 2 180 0 410 351 66 0 chr21 26475455 26475606 -8431964 + MIR SINE MIR 8 168 -94 1224 127 0 8 chr21 26476539 26477187 -8430383 + (TGGA)n Simple_repeat Simple_repeat 1 642 0 335 285 103 12 chr21 26484198 26484337 -8423233 + MIR SINE MIR 20 162 -66 379 326 99 43 chr21 26484533 26484837 -8422733 - L2 LINE L2 -17 3255 2935 180 0 0 0 chr21 26485912 26485932 -8421638 + (TA)n Simple_repeat Simple_repeat 1 20 0 348 240 0 0 chr21 26486402 26486502 -8421068 + CT-rich Low_complexity Low_complexity 1 100 0 260 53 26 0 chr21 26488556 26488594 -8418976 + (TG)n Simple_repeat Simple_repeat 1 39 0 797 236 11 6 chr21 26490780 26490954 -8416616 - MER69A DNA AcHobo -2 175 1 2184 119 3 0 chr21 26492235 26492529 -8415041 - AluSx SINE Alu -17 295 1 380 291 73 65 chr21 26495629 26495691 -8411879 - MIR SINE MIR -6 256 196 4569 55 2 36 chr21 26495691 26496271 -8411299 - L1PA7 LINE L1 -2 6152 5593 380 291 73 65 chr21 26496271 26496455 -8411115 - MIR SINE MIR -66 196 8 258 32 0 0 chr21 26498102 26498133 -8409437 + (A)n Simple_repeat Simple_repeat 1 31 0 180 0 0 0 chr21 26498783 26498803 -8408767 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 180 138 0 0 chr21 26499718 26499747 -8407823 - L3 LINE CR1 -345 1232 1204 351 217 0 14 chr21 26499962 26500031 -8407539 - MIR SINE MIR -61 147 85 216 258 30 15 chr21 26500131 26500197 -8407373 - MIR SINE MIR -194 68 2 363 172 0 0 chr21 26503364 26503422 -8404148 - MIR3 SINE MIR -26 182 125 1116 80 13 0 chr21 26504950 26505100 -8402470 + AluSg/x SINE Alu 158 309 -1 398 288 17 8 chr21 26505174 26505292 -8402278 - MER5B DNA MER1_type -59 119 1 195 351 54 0 chr21 26505523 26505597 -8401973 - L2 LINE L2 -43 3270 3193 1316 118 14 45 chr21 26506061 26506281 -8401289 + L1PA14 LINE L1 5947 6159 -2 189 0 0 0 chr21 26506579 26506600 -8400970 + (TG)n Simple_repeat Simple_repeat 2 22 0 277 305 84 0 chr21 26507454 26507549 -8400021 - L2 LINE L2 -15 3257 3155 319 342 43 0 chr21 26507848 26507965 -8399605 + MIR SINE MIR 16 137 -125 225 349 109 39 chr21 26508777 26509061 -8398509 - L2 LINE L2 -976 2338 2035 808 215 24 49 chr21 26510349 26510554 -8397016 + MER105 DNA DNA 4 203 -1 428 268 188 0 chr21 26510563 26510701 -8396869 + MER5A DNA MER1_type 11 174 -15 5348 134 28 7 chr21 26510828 26511711 -8395859 - L1PA16 LINE L1 -1 6165 5264 309 319 43 9 chr21 26512457 26512573 -8394997 - L2 LINE L2 -233 3039 2920 395 305 40 11 chr21 26513031 26513208 -8394362 - L1ME LINE L1 -297 5824 5643 252 323 109 32 chr21 26513430 26513715 -8393855 + L2 LINE L2 2058 2364 -950 452 344 66 53 chr21 26513894 26514382 -8393188 + L2 LINE L2 2439 2932 -382 248 413 33 0 chr21 26514489 26514610 -8392960 + L2 LINE L2 3134 3258 -14 568 223 207 16 chr21 26514885 26515073 -8392497 - MIR SINE MIR -37 225 2 181 324 101 43 chr21 26515107 26515246 -8392324 - L2 LINE L2 -236 3036 2890 2376 68 0 0 chr21 26515513 26515833 -8391737 + AluY SINE Alu 1 320 0 851 229 62 21 chr21 26516293 26516533 -8391037 + Charlie4 DNA MER1_type 12 261 -1700 590 259 18 12 chr21 26516563 26516733 -8390837 + Charlie4 DNA MER1_type 1791 1961 0 830 137 36 0 chr21 26517066 26517205 -8390365 + MER53 DNA DNA 46 189 0 2608 58 0 3 chr21 26517582 26517892 -8389678 - AluY SINE Alu -2 309 1 2227 96 17 7 chr21 26518469 26518770 -8388800 + AluSx SINE Alu 1 304 -8 2275 116 0 0 chr21 26519002 26519303 -8388267 + AluSx SINE Alu 1 301 -11 355 271 77 52 chr21 26520118 26520273 -8387297 - MER5A DNA MER1_type -10 179 21 233 319 0 33 chr21 26520403 26520494 -8387076 + MIR SINE MIR 59 146 -116 270 0 0 0 chr21 26520547 26520577 -8386993 + (CA)n Simple_repeat Simple_repeat 2 31 0 858 244 6 6 chr21 26521187 26521367 -8386203 + MER5A DNA MER1_type 3 182 -7 386 268 87 8 chr21 26521417 26521544 -8386026 + MIR SINE MIR 113 249 -13 412 270 66 43 chr21 26521647 26521858 -8385712 + MIR SINE MIR 11 226 -36 2205 119 0 0 chr21 26522242 26522537 -8385033 + AluSx SINE Alu 5 299 -13 336 206 19 56 chr21 26522875 26522982 -8384588 - MLT1I LTR MaLR -266 143 41 3796 121 6 0 chr21 26524611 26525122 -8382448 + MER75 DNA T2_type 1 514 0 335 154 69 8 chr21 26525607 26525860 -8381710 + (TAGA)n Simple_repeat Simple_repeat 1 268 0 480 306 59 11 chr21 26528456 26528642 -8378928 - MIR SINE MIR -66 196 2 21 0 0 0 chr21 26530598 26530619 -8376951 + AT_rich Low_complexity Low_complexity 1 21 0 427 240 10 21 chr21 26530655 26530751 -8376819 + MER5A DNA MER1_type 10 104 -85 258 116 0 0 chr21 26531498 26531541 -8376029 + (CA)n Simple_repeat Simple_repeat 1 43 0 266 140 0 0 chr21 26531546 26531596 -8375974 - MER4-int LTR ERV1 -5437 1161 1112 204 179 0 0 chr21 26531596 26531635 -8375935 + (CA)n Simple_repeat Simple_repeat 1 39 0 2791 23 0 0 chr21 26533654 26533959 -8373611 - L1PA4 LINE L1 -3 6152 5848 1975 49 11 26 chr21 26534215 26534481 -8373089 - AluY SINE Alu 0 311 50 1370 96 0 0 chr21 26534484 26534661 -8372909 + AluSq SINE Alu 136 312 -1 1950 139 38 0 chr21 26537165 26537453 -8370117 - AluSx SINE Alu -13 299 1 488 268 27 45 chr21 26537713 26537933 -8369637 - MARNA DNA Mariner -68 518 303 2228 120 0 0 chr21 26538581 26538889 -8368681 - AluSq SINE Alu -5 308 1 798 161 62 0 chr21 26538895 26539056 -8368514 - L1MA7 LINE L1 -3 6288 6118 1837 173 13 7 chr21 26539552 26539859 -8367711 - AluJb SINE Alu -3 309 1 310 198 163 0 chr21 26541706 26541792 -8365778 - MLT1C LTR MaLR 0 390 291 1432 123 65 78 chr21 26541828 26542137 -8365433 - MLT1C LTR MaLR -162 305 1 543 303 88 59 chr21 26542848 26543424 -8364146 + L2 LINE L2 2417 3012 -260 2307 155 74 67 chr21 26543517 26544041 -8363529 + LTR1 LTR ERV1 1 528 -257 773 227 38 11 chr21 26544043 26544228 -8363342 + LTR1B LTR ERV1 637 826 0 330 177 52 83 chr21 26544379 26544475 -8363095 - MER96B DNA MER1_type? -9 408 316 2376 276 42 41 chr21 26544656 26546043 -8361527 + L1ME1 LINE L1 47 1436 -4644 243 120 0 40 chr21 26546063 26546138 -8361432 + (TA)n Simple_repeat Simple_repeat 2 73 0 3328 213 54 56 chr21 26546573 26547648 -8359922 + L1ME1 LINE L1 4189 5273 -825 1979 44 0 0 chr21 26547648 26547876 -8359694 - AluY SINE Alu -12 299 72 3328 213 54 56 chr21 26547876 26548225 -8359345 + L1ME1 LINE L1 5273 5621 -477 1132 168 46 0 chr21 26548231 26548428 -8359142 + MER2 DNA MER2_type 1 206 -138 582 262 86 42 chr21 26548519 26548611 -8358959 + L1ME1 LINE L1 5606 5692 -408 2201 108 0 7 chr21 26548611 26548916 -8358654 + AluSg SINE Alu 1 303 -7 582 262 86 42 chr21 26548916 26549308 -8358262 + L1ME1 LINE L1 5692 6095 -5 323 290 10 10 chr21 26549363 26549463 -8358107 - MER5A DNA MER1_type -83 106 7 701 250 92 29 chr21 26549623 26549863 -8357707 - MIR SINE MIR 0 262 8 2306 137 126 5 chr21 26550395 26550776 -8356794 - MSTA LTR MaLR -1 427 1 316 214 44 60 chr21 26552722 26552855 -8354715 + MLT1J2 LTR MaLR 66 197 -249 2106 240 97 0 chr21 26553141 26553658 -8353912 - MLT1F1 LTR MaLR 0 567 1 226 235 112 31 chr21 26555298 26555396 -8352174 + MIR SINE MIR 17 122 -86 617 279 49 45 chr21 26555648 26555707 -8351863 - MIR SINE MIR -5 257 200 2712 201 24 0 chr21 26555707 26556214 -8351356 - LTR53 LTR ERVL 0 519 1 617 279 49 45 chr21 26556214 26556401 -8351169 - MIR SINE MIR -62 200 10 226 291 18 0 chr21 26556886 26556941 -8350629 - MIR SINE MIR -88 120 65 2438 78 0 3 chr21 26557148 26557481 -8350089 + AluY SINE Alu 1 332 0 231 36 0 0 chr21 26557486 26557514 -8350056 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 362 287 143 28 chr21 26557772 26557917 -8349653 + MIR SINE MIR 22 201 -61 3497 118 17 43 chr21 26557917 26558457 -8349113 - MER1A DNA MER1_type -1 526 1 362 287 143 28 chr21 26558457 26558527 -8349043 + MIR SINE MIR 201 262 0 372 226 49 10 chr21 26558631 26558733 -8348837 - MER5A DNA MER1_type -80 109 4 1734 190 68 42 chr21 26559491 26559849 -8347721 - MSTD LTR MaLR -2 394 24 2089 167 100 0 chr21 26559849 26560238 -8347332 + MSTC LTR MaLR 1 428 0 1734 190 68 42 chr21 26560238 26560263 -8347307 - MSTD LTR MaLR -372 24 1 5246 237 40 27 chr21 26560268 26561910 -8345660 - MSTD-int LTR MaLR -4 1731 2 1522 181 83 12 chr21 26561915 26562275 -8345295 - MSTD LTR MaLR -9 387 1 473 294 19 50 chr21 26562603 26562836 -8344734 - MIR SINE MIR 0 262 33 800 254 46 26 chr21 26564889 26565310 -8342260 - MLT1C LTR MaLR -16 451 2 2005 129 156 5 chr21 26566082 26566454 -8341116 - MSTA LTR MaLR 0 428 1 1991 171 35 3 chr21 26566825 26567199 -8340371 - MLT1B LTR MaLR -4 386 1 331 315 19 0 chr21 26568144 26568252 -8339318 + HERV16 LTR ERVL 1872 1981 -3015 3526 141 37 6 chr21 26568587 26569127 -8338443 + MER41D LTR ERV1 1 557 0 1144 202 45 45 chr21 26569370 26569637 -8337933 - MLT1B LTR MaLR -121 269 3 836 298 44 7 chr21 26569853 26570148 -8337422 + LTR16A LTR ERVL 130 435 -15 561 306 69 9 chr21 26570236 26570468 -8337102 + Charlie2a DNA MER1_type 229 474 -2308 767 255 81 0 chr21 26570466 26570701 -8336869 + Charlie2a DNA MER1_type 733 986 -1876 23 68 0 0 chr21 26571975 26572019 -8335551 + AT_rich Low_complexity Low_complexity 1 44 0 207 176 0 0 chr21 26573852 26573886 -8333684 + (ATG)n Simple_repeat Simple_repeat 3 36 0 328 326 54 31 chr21 26575342 26575471 -8332099 + MIR SINE MIR 53 184 -78 285 229 0 0 chr21 26575840 26575901 -8331669 - L2 LINE L2 -258 3055 2995 331 227 130 84 chr21 26576218 26576311 -8331259 - MIR SINE MIR -2 260 156 2080 110 3 0 chr21 26576311 26576603 -8330967 + AluSx SINE Alu 1 293 -19 331 227 130 84 chr21 26576603 26576663 -8330907 - MIR SINE MIR -106 156 100 332 259 92 80 chr21 26577283 26577461 -8330109 + MIR SINE MIR 2 170 -38 487 191 32 19 chr21 26581208 26581365 -8326205 + GA-rich Low_complexity Low_complexity 3 161 0 247 208 0 19 chr21 26581378 26581431 -8326139 + GA-rich Low_complexity Low_complexity 1 52 0 207 325 56 56 chr21 26581900 26582026 -8325544 + MIR3 SINE MIR 3 128 -80 724 246 79 17 chr21 26582720 26582960 -8324610 + MIR SINE MIR 7 261 -1 180 0 0 0 chr21 26584201 26584221 -8323349 + (CA)n Simple_repeat Simple_repeat 2 21 0 207 204 0 0 chr21 26584520 26584574 -8322996 + GA-rich Low_complexity Low_complexity 1 54 0 286 234 13 12 chr21 26586029 26586307 -8321263 + (CA)n Simple_repeat Simple_repeat 1 278 0 371 377 13 7 chr21 26587025 26587179 -8320391 + MIR SINE MIR 49 203 -59 783 245 53 12 chr21 26587706 26587951 -8319619 + L1MC4a LINE L1 5679 5933 -1875 705 268 37 82 chr21 26588931 26589286 -8318284 - L2 LINE L2 -350 2964 2626 405 311 61 26 chr21 26589409 26589673 -8317897 + MLT1I LTR MaLR 98 370 -39 436 243 183 94 chr21 26589812 26590047 -8317523 - L2 LINE L2 -957 2357 2102 1979 132 81 35 chr21 26590139 26590487 -8317083 + THE1B LTR MaLR 1 364 0 2028 120 0 0 chr21 26592507 26592814 -8314756 - AluSx SINE Alu 0 307 1 874 323 50 30 chr21 26592970 26593192 -8314378 + MLT1K LTR MaLR 95 330 -258 1127 192 23 5 chr21 26593192 26593406 -8314164 + MER20 DNA MER1_type 1 218 -1 874 323 50 30 chr21 26593406 26593579 -8313991 + MLT1K LTR MaLR 330 498 -90 5361 69 0 6 chr21 26594102 26594785 -8312785 + L1PA8 LINE L1 5494 6172 0 21 0 0 0 chr21 26594785 26594806 -8312764 + AT_rich Low_complexity Low_complexity 1 21 0 927 190 158 42 chr21 26595784 26596068 -8311502 + MLT2C1 LTR ERVL 25 341 -56 363 287 54 23 chr21 26596201 26596330 -8311240 + MLT1J LTR MaLR 335 467 -44 1220 203 51 13 chr21 26596823 26597256 -8310314 - MLT1F1 LTR MaLR -11 615 31 240 50 0 75 chr21 26597512 26597552 -8310018 - MST-int LTR MaLR -936 715 679 702 104 0 0 chr21 26598061 26598157 -8309413 - MSTA LTR MaLR -332 96 1 6506 86 11 14 chr21 26598160 26599661 -8307909 - L1PA13 LINE L1 0 6163 4664 362 327 36 12 chr21 26599663 26599828 -8307742 - L1MC/D LINE L1 -2297 5488 5320 332 309 82 57 chr21 26599835 26600713 -8306857 - L1MC/D LINE L1 -845 5301 4402 316 241 38 0 chr21 26600714 26600793 -8306777 - L1MC/D LINE L1 -1750 4396 4315 1270 277 79 40 chr21 26600851 26602134 -8305436 - L1MC/D LINE L1 -1902 4244 2906 233 296 64 32 chr21 26603134 26603259 -8304311 + MIR3 SINE MIR 45 173 -35 3693 100 2 0 chr21 26603743 26604234 -8303336 - LTR22B LTR ERVK 0 492 1 268 258 106 91 chr21 26606632 26606764 -8300806 + MIR SINE MIR 84 217 -45 238 248 83 91 chr21 26608026 26608147 -8299423 - L2 LINE L2 -1 3271 3152 254 344 10 0 chr21 26608152 26608248 -8299322 - L3 LINE CR1 -402 1175 1079 398 351 100 13 chr21 26608690 26608929 -8298641 - L3 LINE CR1 -794 783 524 537 118 82 0 chr21 26609295 26609380 -8298190 - AluJo SINE Alu -16 296 205 775 116 77 65 chr21 26609375 26609530 -8298040 - AluJo SINE Alu -143 169 13 22 0 0 0 chr21 26611764 26611786 -8295784 + AT_rich Low_complexity Low_complexity 1 22 0 215 205 0 0 chr21 26612218 26612257 -8295313 + CT-rich Low_complexity Low_complexity 2 40 0 815 272 81 37 chr21 26613551 26613985 -8293585 + LTR16A1 LTR ERVL 4 456 -1 519 253 54 21 chr21 26616961 26617147 -8290423 + MIR SINE MIR 2 193 -69 416 212 0 0 chr21 26617320 26617400 -8290170 - MIR SINE MIR -19 243 164 415 292 89 5 chr21 26618726 26618896 -8288674 + MIR SINE MIR 2 181 -62 220 160 0 40 chr21 26619320 26619370 -8288200 - L2 LINE L2 0 3313 3266 1616 174 146 41 chr21 26619919 26620338 -8287232 + MLT1C LTR MaLR 5 467 0 660 185 123 12 chr21 26623792 26623894 -8283676 + MER5A DNA MER1_type 4 93 -96 2417 87 0 0 chr21 26623894 26624203 -8283367 - AluY SINE Alu -2 309 1 660 185 123 12 chr21 26624203 26624262 -8283308 + MER5A DNA MER1_type 93 183 -6 34 24 0 0 chr21 26626450 26626491 -8281079 + AT_rich Low_complexity Low_complexity 1 41 0 2452 104 0 0 chr21 26626869 26627178 -8280392 + AluSc SINE Alu 1 309 0 22 35 0 0 chr21 26628466 26628495 -8279075 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr21 26631111 26631133 -8276437 + AT_rich Low_complexity Low_complexity 1 22 0 273 119 0 0 chr21 26632264 26632306 -8275264 + (A)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr21 26633571 26633595 -8273975 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 26633639 26633660 -8273910 + AT_rich Low_complexity Low_complexity 1 21 0 208 151 19 19 chr21 26634526 26634579 -8272991 + CT-rich Low_complexity Low_complexity 1 53 0 564 211 21 7 chr21 26634997 26635139 -8272431 - MER5B DNA MER1_type -27 151 8 481 158 10 20 chr21 26635162 26635263 -8272307 + MER5A DNA MER1_type 10 109 -80 2584 59 0 10 chr21 26635422 26635727 -8271843 + AluY SINE Alu 1 302 -9 860 239 58 40 chr21 26636632 26636908 -8270662 + L1ME4a LINE L1 5581 5861 -260 239 171 40 26 chr21 26637185 26637261 -8270309 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 214 241 0 0 chr21 26637295 26637349 -8270221 + A-rich Low_complexity Low_complexity 2 55 0 41 58 0 0 chr21 26637360 26637429 -8270141 + AT_rich Low_complexity Low_complexity 1 69 0 193 104 30 45 chr21 26637429 26637496 -8270074 + (TA)n Simple_repeat Simple_repeat 2 67 0 2450 84 3 10 chr21 26638753 26639063 -8268507 + AluSp SINE Alu 1 308 -5 1986 113 36 0 chr21 26640864 26641159 -8266411 - AluSx SINE Alu 0 305 1 708 283 66 33 chr21 26642229 26642561 -8265009 - L1MEd LINE L1 -5253 866 524 729 301 74 19 chr21 26642600 26642869 -8264701 - L1MEd LINE L1 -5799 320 37 2071 147 48 67 chr21 26643509 26643985 -8263585 - MLT1C LTR MaLR 0 467 1 620 289 23 30 chr21 26644660 26644923 -8262647 + MIR SINE MIR 2 262 0 264 336 45 0 chr21 26645245 26645355 -8262215 + MIR3 SINE MIR 86 200 -8 2250 110 0 7 chr21 26647058 26647391 -8260179 + AluSx SINE Alu 1 312 0 288 0 0 0 chr21 26647822 26647854 -8259716 + (TG)n Simple_repeat Simple_repeat 2 33 0 1485 174 93 0 chr21 26647855 26648113 -8259457 - AluJo SINE Alu -29 283 2 2533 86 0 0 chr21 26648196 26648509 -8259061 + AluSq SINE Alu 1 313 0 285 135 0 0 chr21 26649840 26649892 -8257678 + (TG)n Simple_repeat Simple_repeat 1 52 0 209 278 0 0 chr21 26651289 26651343 -8256227 - L2 LINE L2 -16 3256 3203 1157 132 0 6 chr21 26651394 26651568 -8256002 - AluSg/x SINE Alu -3 307 135 336 297 71 25 chr21 26651586 26651825 -8255745 - L2 LINE L2 -146 3167 2918 304 280 25 34 chr21 26651912 26652030 -8255540 + MIR SINE MIR 26 142 -66 360 0 0 0 chr21 26652636 26652676 -8254894 + (TG)n Simple_repeat Simple_repeat 2 41 0 23 33 0 0 chr21 26652729 26652759 -8254811 + AT_rich Low_complexity Low_complexity 1 30 0 2140 92 37 0 chr21 26653257 26653530 -8254040 + AluSc SINE Alu 1 283 -26 207 0 0 0 chr21 26653533 26653556 -8254014 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 1367 215 57 48 chr21 26653576 26653739 -8253831 + MLT1A2 LTR MaLR 18 178 -196 342 0 0 0 chr21 26653739 26653777 -8253793 + (TC)n Simple_repeat Simple_repeat 2 39 0 1367 215 57 48 chr21 26653777 26653967 -8253603 + MLT1A2 LTR MaLR 178 374 0 2201 115 10 6 chr21 26654653 26654965 -8252605 + AluSp SINE Alu 1 313 0 221 83 28 0 chr21 26654965 26655001 -8252569 + (GA)n Simple_repeat Simple_repeat 2 38 0 2351 84 3 0 chr21 26656200 26656496 -8251074 + AluSp SINE Alu 1 297 -16 594 165 0 0 chr21 26656653 26656744 -8250826 + AluS SINE Alu 2 92 -221 1449 89 0 0 chr21 26656744 26656924 -8250646 - AluSq SINE Alu -131 182 3 1788 174 23 3 chr21 26657457 26657762 -8249808 + AluJb SINE Alu 2 312 0 2432 107 13 19 chr21 26658446 26658820 -8248750 - L1PB1 LINE L1 -3 6148 5777 527 244 21 8 chr21 26658844 26659086 -8248484 + (CATATA)n Simple_repeat Simple_repeat 1 245 0 300 322 0 0 chr21 26659086 26659176 -8248394 + L1MC4 LINE L1 6614 6703 -1339 528 219 0 0 chr21 26659176 26659299 -8248271 + (TA)n Simple_repeat Simple_repeat 1 123 0 3254 112 36 60 chr21 26659306 26660010 -8247560 - L1P5 LINE L1 -361 5790 5104 441 84 0 56 chr21 26660316 26660387 -8247183 - FRAM/FAM SINE Alu -90 86 20 1932 144 3 7 chr21 26661648 26661939 -8245631 - AluJo SINE Alu -16 296 7 495 213 19 9 chr21 26662270 26662378 -8245192 - MIR SINE MIR -140 122 14 217 301 97 18 chr21 26664206 26664319 -8243251 + MIR SINE MIR 86 207 -55 1580 60 90 51 chr21 26665489 26665723 -8241847 - AluSq SINE Alu -2 311 69 2214 110 19 7 chr21 26666362 26666670 -8240900 - AluSx SINE Alu 0 312 1 536 186 107 88 chr21 26666756 26666971 -8240599 - MER20 DNA MER1_type 0 219 1 374 254 29 7 chr21 26667163 26667301 -8240269 + L2 LINE L2 2447 2587 -727 667 283 120 13 chr21 26667351 26667724 -8239846 + L2 LINE L2 2674 3084 -229 620 215 62 6 chr21 26668312 26668489 -8239081 - MER5A DNA MER1_type 0 189 3 1835 87 124 14 chr21 26670019 26670294 -8237276 + AluSg1 SINE Alu 1 305 -4 1542 212 105 11 chr21 26670688 26671051 -8236519 + MLT2C1 LTR ERVL 1 397 0 1996 121 40 7 chr21 26671604 26671902 -8235668 + AluSq SINE Alu 1 308 -5 2675 52 0 0 chr21 26672278 26672587 -8234983 - AluY SINE Alu -2 309 1 1172 94 0 12 chr21 26674609 26674769 -8232801 - AluSg/x SINE Alu -1 309 152 243 0 0 0 chr21 26675707 26675734 -8231836 + (A)n Simple_repeat Simple_repeat 1 27 0 195 129 0 0 chr21 26678488 26678519 -8229051 + (CCTA)n Simple_repeat Simple_repeat 3 33 0 1650 136 64 20 chr21 26679593 26679888 -8227682 + AluY SINE Alu 4 311 0 525 249 73 6 chr21 26680178 26680343 -8227227 + MER104 DNA MER2_type 4 179 -1 203 220 34 0 chr21 26680597 26680656 -8226914 + GA-rich Low_complexity Low_complexity 2 62 0 409 244 8 19 chr21 26681723 26681982 -8225588 + (CATA)n Simple_repeat Simple_repeat 1 256 0 2181 116 7 3 chr21 26683081 26683391 -8224179 + AluSq SINE Alu 1 311 -2 249 193 88 0 chr21 26683871 26683928 -8223642 + MER5A DNA MER1_type 48 109 -80 288 77 0 0 chr21 26684575 26684614 -8222956 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 39 0 0 0 chr21 26685902 26685941 -8221629 + AT_rich Low_complexity Low_complexity 1 39 0 2220 102 0 7 chr21 26686637 26686932 -8220638 + AluSc SINE Alu 3 295 -14 2390 99 0 0 chr21 26687624 26687927 -8219643 + AluSg SINE Alu 1 303 -7 182 305 74 30 chr21 26688407 26688610 -8218960 + L2 LINE L2 1954 2165 -1149 204 319 17 35 chr21 26689225 26689341 -8218229 - L2 LINE L2 -9 3304 3191 2118 184 13 15 chr21 26690553 26690944 -8216626 - MLT1B LTR MaLR 0 390 1 326 211 14 0 chr21 26690946 26691017 -8216553 + L2 LINE L2 3162 3233 -39 283 224 17 0 chr21 26691062 26691120 -8216450 + Charlie1 DNA MER1_type 1 59 -2702 886 110 52 13 chr21 26691123 26691278 -8216292 + Charlie1 DNA MER1_type 2429 2589 -172 1269 119 0 26 chr21 26691278 26691452 -8216118 - AluSp SINE Alu -6 307 137 2266 109 3 6 chr21 26691452 26691763 -8215807 - AluSx SINE Alu -2 310 1 1269 119 0 26 chr21 26691763 26691781 -8215789 - AluSp SINE Alu -176 137 120 465 207 103 28 chr21 26691781 26691926 -8215644 + Charlie1 DNA MER1_type 2606 2761 0 230 219 114 29 chr21 26692902 26693007 -8214563 + L2 LINE L2 3194 3307 -6 3263 60 12 0 chr21 26694054 26694467 -8213103 - L1PA7 LINE L1 -4 6150 5733 2642 149 23 42 chr21 26694698 26695222 -8212348 + L1MC1 LINE L1 5820 6333 0 23 0 0 0 chr21 26695553 26695576 -8211994 + AT_rich Low_complexity Low_complexity 1 23 0 297 0 0 0 chr21 26695781 26695814 -8211756 + (TG)n Simple_repeat Simple_repeat 1 33 0 195 80 0 60 chr21 26695814 26695864 -8211706 + (TA)n Simple_repeat Simple_repeat 1 47 0 2634 52 7 0 chr21 26698185 26698493 -8209077 + AluY SINE Alu 2 311 0 265 216 68 27 chr21 26699497 26699571 -8207999 + L2 LINE L2 3188 3264 -49 429 238 112 28 chr21 26699592 26699735 -8207835 + MIR SINE MIR 98 252 -10 270 56 0 0 chr21 26699738 26699774 -8207796 + (TTA)n Simple_repeat Simple_repeat 3 38 0 197 246 58 0 chr21 26701606 26701675 -8205895 + L2 LINE L2 3199 3271 -1 198 143 0 0 chr21 26701675 26701710 -8205860 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 180 0 0 0 chr21 26702640 26702660 -8204910 + (A)n Simple_repeat Simple_repeat 1 20 0 213 39 0 0 chr21 26702896 26702922 -8204648 + (TA)n Simple_repeat Simple_repeat 1 26 0 24 32 0 0 chr21 26702942 26702973 -8204597 + AT_rich Low_complexity Low_complexity 1 31 0 515 229 7 0 chr21 26703275 26703419 -8204151 + (TG)n Simple_repeat Simple_repeat 2 146 0 374 265 53 8 chr21 26704466 26704598 -8202972 - MIR SINE MIR -107 155 18 1898 147 33 3 chr21 26706483 26706782 -8200788 - AluJb SINE Alu -2 310 3 1321 246 67 21 chr21 26708860 26709088 -8198482 + MLT1C LTR MaLR 8 224 -243 3798 190 29 4 chr21 26709088 26709803 -8197767 - MER44D DNA MER2_type 0 605 1 1321 246 67 21 chr21 26709803 26710008 -8197562 + MLT1C LTR MaLR 224 461 -6 207 0 0 0 chr21 26710072 26710095 -8197475 + (T)n Simple_repeat Simple_repeat 1 23 0 189 74 0 0 chr21 26710773 26710800 -8196770 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 4179 174 43 20 chr21 26711672 26712164 -8195406 + L1MA9 LINE L1 5318 5842 -470 2043 140 3 0 chr21 26712164 26712457 -8195113 - AluSx SINE Alu -18 294 1 4179 174 43 20 chr21 26712457 26712900 -8194670 + L1MA9 LINE L1 5842 6274 -38 2095 95 14 17 chr21 26713047 26713171 -8194399 + AluSc SINE Alu 1 124 -185 189 0 0 0 chr21 26713171 26713192 -8194378 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 2095 95 14 17 chr21 26713192 26713361 -8194209 + AluSc SINE Alu 124 293 -16 208 260 0 0 chr21 26713461 26713511 -8194059 - L2 LINE L2 0 3272 3223 962 131 7 7 chr21 26713600 26713745 -8193825 - AluSq/x SINE Alu -168 145 1 6052 132 48 53 chr21 26714164 26714942 -8192628 + Tigger3b DNA MER2_type 1 781 -2247 2367 84 0 0 chr21 26714942 26715238 -8192332 - AluSc SINE Alu -13 296 1 6052 132 48 53 chr21 26715238 26715428 -8192142 + Tigger3b DNA MER2_type 781 970 -2058 2198 102 0 0 chr21 26715428 26715713 -8191857 - AluY SINE Alu -26 285 1 6052 132 48 53 chr21 26715713 26715980 -8191590 + Tigger3b DNA MER2_type 970 1231 0 417 252 17 26 chr21 26716186 26716327 -8191243 - FLAM_A SINE Alu 0 141 2 431 231 16 50 chr21 26716363 26716484 -8191086 - MIR SINE MIR -42 220 104 28 29 0 0 chr21 26716782 26716817 -8190753 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr21 26720681 26720704 -8186866 + AT_rich Low_complexity Low_complexity 1 23 0 421 224 139 48 chr21 26721638 26721803 -8185767 + MIR SINE MIR 82 261 -1 284 271 98 75 chr21 26722381 26722860 -8184710 + L1ME4a LINE L1 5400 5889 -232 347 181 21 32 chr21 26723507 26723601 -8183969 - MIR SINE MIR -97 165 73 406 245 9 0 chr21 26725114 26725220 -8182350 + Charlie4 DNA MER1_type 1840 1946 -15 24 0 0 0 chr21 26728116 26728140 -8179430 + AT_rich Low_complexity Low_complexity 1 24 0 380 224 21 15 chr21 26729178 26729374 -8178196 + GA-rich Low_complexity Low_complexity 1 197 0 275 220 27 0 chr21 26729942 26730031 -8177539 - L1MC4 LINE L1 -4 8038 7893 180 97 0 0 chr21 26730081 26730112 -8177458 + (TC)n Simple_repeat Simple_repeat 1 31 0 2503 59 7 7 chr21 26730543 26730848 -8176722 - AluY SINE Alu -6 305 1 2366 65 24 0 chr21 26732214 26732506 -8175064 - AluY SINE Alu -12 299 1 23 0 0 0 chr21 26732526 26732549 -8175021 + AT_rich Low_complexity Low_complexity 1 23 0 240 154 0 0 chr21 26733470 26733522 -8174048 + (TG)n Simple_repeat Simple_repeat 1 52 0 303 28 0 0 chr21 26737008 26737044 -8170526 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 693 184 0 0 chr21 26737431 26737599 -8169971 + (CA)n Simple_repeat Simple_repeat 1 168 0 201 147 0 0 chr21 26737902 26737936 -8169634 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 674 265 74 19 chr21 26738218 26738691 -8168879 + MLT1G3 LTR MaLR 41 527 -15 238 294 47 12 chr21 26738777 26738862 -8168708 - L2 LINE L2 0 3313 3226 1139 170 14 31 chr21 26741221 26741444 -8166126 - MER20 DNA MER1_type 0 219 1 24 0 0 0 chr21 26742302 26742326 -8165244 + AT_rich Low_complexity Low_complexity 1 24 0 2281 93 0 0 chr21 26742332 26742622 -8164948 + AluSc SINE Alu 1 290 -19 581 290 63 0 chr21 26743247 26743454 -8164116 + L1ME LINE L1 3111 3330 -2816 1540 261 92 40 chr21 26743455 26744756 -8162814 + L1ME LINE L1 3335 4702 -1444 9527 147 24 23 chr21 26744759 26747709 -8159861 + L1MA4A LINE L1 3324 6273 -30 510 17 0 0 chr21 26747718 26747777 -8159793 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 789 251 53 62 chr21 26747827 26748665 -8158905 + L1ME LINE L1 4725 5554 -610 1364 283 61 4 chr21 26748677 26749168 -8158402 - LTR33 LTR ERVL -2 519 1 335 289 0 0 chr21 26749189 26749279 -8158291 + L1ME LINE L1 5626 5715 -455 321 68 0 0 chr21 26749471 26749515 -8158055 + (CA)n Simple_repeat Simple_repeat 1 44 0 219 359 19 9 chr21 26749747 26749853 -8157717 - L2 LINE L2 -262 3051 2945 365 290 58 68 chr21 26750386 26750593 -8156977 - L2 LINE L2 -1025 2289 2085 304 290 20 10 chr21 26750617 26750717 -8156853 - L2 LINE L2 -2047 1267 1167 365 279 89 6 chr21 26750765 26750923 -8156647 - MIR SINE MIR -82 180 10 186 43 0 0 chr21 26754221 26754244 -8153326 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 228 282 103 29 chr21 26754857 26755031 -8152539 + L2 LINE L2 2226 2412 -902 22 0 0 0 chr21 26755433 26755455 -8152115 + AT_rich Low_complexity Low_complexity 1 22 0 489 255 57 0 chr21 26756744 26756885 -8150685 + MER5A DNA MER1_type 1 149 -40 2078 157 84 8 chr21 26757374 26757756 -8149814 - MLT1C LTR MaLR 0 467 57 487 107 173 13 chr21 26757761 26757836 -8149734 + AluSq SINE Alu 123 209 -104 2812 19 0 3 chr21 26757917 26758229 -8149341 - AluYa5 SINE Alu 0 311 1 23 54 0 0 chr21 26758254 26758291 -8149279 + AT_rich Low_complexity Low_complexity 1 37 0 1066 297 85 28 chr21 26758481 26759047 -8148523 - L2 LINE L2 -361 2953 2356 2319 102 0 3 chr21 26759164 26759469 -8148101 + AluSq SINE Alu 1 304 -9 473 166 24 181 chr21 26759477 26759535 -8148035 + L3 LINE CR1 1180 1245 -332 2050 154 0 0 chr21 26759535 26759840 -8147730 - AluSx SINE Alu -6 306 2 473 166 24 181 chr21 26759840 26759986 -8147584 + L3 LINE CR1 1245 1352 -225 2544 140 17 17 chr21 26763998 26764412 -8143158 + L1MB2 LINE L1 5446 5859 -324 1405 70 21 16 chr21 26764429 26764616 -8142954 - L1PA10 LINE L1 -1 6167 5980 1602 167 67 13 chr21 26764616 26764921 -8142649 + L1MB2 LINE L1 5841 6169 -2 21 36 0 0 chr21 26764926 26764954 -8142616 + AT_rich Low_complexity Low_complexity 1 28 0 4737 179 34 33 chr21 26766431 26767834 -8139736 + L1MB3 LINE L1 4789 6180 -3 254 327 20 30 chr21 26768264 26768365 -8139205 + MIR SINE MIR 52 151 -57 871 232 80 40 chr21 26768699 26769001 -8138569 + MER33 DNA MER1_type 1 314 -10 2306 98 7 0 chr21 26769375 26769671 -8137899 - AluSx SINE Alu -9 303 6 1092 146 34 0 chr21 26769711 26769889 -8137681 - L1MB5 LINE L1 -8 6166 5983 1039 117 7 0 chr21 26771262 26771407 -8136163 + L1PA10 LINE L1 6018 6163 -5 1835 108 91 17 chr21 26771482 26771769 -8135801 - AluSg SINE Alu -2 308 1 394 333 58 25 chr21 26772565 26772805 -8134765 - L3 LINE CR1 -226 1351 1104 386 286 51 22 chr21 26772815 26772993 -8134577 + L1ME4a LINE L1 5931 6113 -8 939 281 138 28 chr21 26773003 26773219 -8134351 - L2 LINE L2 0 3313 3122 2083 136 0 10 chr21 26773219 26773521 -8134049 - AluSx SINE Alu -13 299 1 939 281 138 28 chr21 26773521 26774001 -8133569 - L2 LINE L2 -191 3122 2503 191 400 18 9 chr21 26774013 26774123 -8133447 - L3 LINE CR1 -478 1099 989 2230 83 0 54 chr21 26777932 26778245 -8129325 - AluY SINE Alu -15 296 1 2302 66 0 11 chr21 26778310 26778633 -8128937 + AluY SINE Alu 1 320 0 1710 213 17 14 chr21 26779845 26780197 -8127373 + MLT1A1 LTR MaLR 13 365 0 4321 221 18 15 chr21 26780529 26781617 -8125953 - L1PA15 LINE L1 -2700 3446 2355 9235 206 22 11 chr21 26781617 26784326 -8123244 + L1PA15 LINE L1 3442 6165 0 344 279 72 0 chr21 26784329 26784440 -8123130 + L1MC1 LINE L1 4951 5069 -1077 2284 105 0 0 chr21 26784526 26784820 -8122750 + AluSx SINE Alu 1 294 -18 22 70 0 0 chr21 26784898 26784941 -8122629 + AT_rich Low_complexity Low_complexity 1 43 0 319 309 78 18 chr21 26785207 26785529 -8122041 + L1MC1 LINE L1 5402 5740 -422 460 215 135 84 chr21 26786118 26786392 -8121178 + MLT1J2 LTR MaLR 159 446 -4 207 0 0 0 chr21 26788865 26788888 -8118682 + (T)n Simple_repeat Simple_repeat 1 23 0 2252 95 3 7 chr21 26789168 26789464 -8118106 - AluSq SINE Alu -18 295 1 390 307 37 18 chr21 26789837 26790055 -8117515 + LTR16B LTR ERVL 97 318 -146 21 0 0 0 chr21 26790206 26790227 -8117343 + AT_rich Low_complexity Low_complexity 1 21 0 479 278 15 0 chr21 26791709 26791842 -8115728 + MER112 DNA MER1_type 66 200 -60 407 237 179 26 chr21 26791891 26792047 -8115523 + MER5A DNA MER1_type 4 183 -6 2710 174 4 48 chr21 26792420 26792956 -8114614 + L1MC1 LINE L1 5813 6324 -9 1966 261 89 46 chr21 26794019 26795364 -8112206 + L2 LINE L2 1780 3253 -60 200 325 88 0 chr21 26796284 26796398 -8111172 - MER5A DNA MER1_type -27 162 39 21 36 0 0 chr21 26797727 26797755 -8109815 + AT_rich Low_complexity Low_complexity 1 28 0 522 256 11 21 chr21 26797808 26797977 -8109593 - MIR SINE MIR -25 237 33 242 289 48 10 chr21 26798607 26798711 -8108859 + L2 LINE L2 3164 3271 -1 489 238 99 41 chr21 26799286 26799651 -8107919 - L1ME3 LINE L1 -211 5951 5536 2018 143 3 0 chr21 26800727 26801021 -8106549 + AluJb SINE Alu 17 311 -1 2348 70 6 38 chr21 26801556 26801871 -8105699 + AluY SINE Alu 1 305 -6 3440 194 23 79 chr21 26802338 26803364 -8104206 + LTR5 LTR ERVK 1 969 0 1511 164 29 11 chr21 26804770 26805044 -8102526 - MER58B DNA MER1_type -6 335 57 460 317 62 31 chr21 26805684 26805908 -8101662 - MIR SINE MIR -4 258 28 241 260 119 40 chr21 26806100 26806277 -8101293 + LTR33 LTR ERVL 23 213 -308 348 144 17 58 chr21 26807679 26807769 -8099801 + MLT1G3 LTR MaLR 462 530 0 248 212 110 50 chr21 26808217 26808318 -8099252 + MLT1I LTR MaLR 324 428 -22 2497 61 0 0 chr21 26809307 26809601 -8097969 - AluY SINE Alu -17 294 1 1103 68 8 0 chr21 26809601 26809734 -8097836 - AluY SINE Alu -177 134 1 207 295 70 16 chr21 26810723 26810852 -8096718 + MIR SINE MIR 19 154 -108 2455 225 69 51 chr21 26810873 26811243 -8096327 + MER21B LTR ERV1 21 383 -480 2576 59 0 0 chr21 26811243 26811548 -8096022 + AluY SINE Alu 1 305 -6 2455 225 69 51 chr21 26811548 26811900 -8095670 + MER21B LTR ERV1 383 756 -107 181 295 38 57 chr21 26812069 26812174 -8095396 + MIR SINE MIR 159 261 -1 1284 92 0 0 chr21 26812234 26812397 -8095173 - AluSg/x SINE Alu -18 292 130 400 261 108 6 chr21 26812747 26812904 -8094666 + MER96 DNA MER1_type 3 175 0 1411 232 28 56 chr21 26813051 26813443 -8094127 + MLT1B LTR MaLR 2 382 -8 240 35 0 0 chr21 26815011 26815040 -8092530 + (T)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr21 26815571 26815598 -8091972 + AT_rich Low_complexity Low_complexity 1 27 0 1470 114 54 60 chr21 26815598 26815658 -8091912 - L1MA8 LINE L1 -3 6288 6229 537 16 0 0 chr21 26815658 26815720 -8091850 + (TA)n Simple_repeat Simple_repeat 2 63 0 1470 114 54 60 chr21 26815720 26815957 -8091613 - L1MA8 LINE L1 -62 6229 5993 1350 92 57 53 chr21 26815957 26816184 -8091386 + L1MA8 LINE L1 5393 5620 -671 1868 142 25 33 chr21 26816218 26816577 -8090993 + L1MA8 LINE L1 5598 5953 -338 250 205 64 13 chr21 26816575 26816653 -8090917 + L1ME4a LINE L1 6040 6121 0 2479 41 21 0 chr21 26816842 26817133 -8090437 - AluY SINE Alu -14 297 1 209 253 60 12 chr21 26818070 26818153 -8089417 + MIR SINE MIR 106 192 -70 1394 191 9 48 chr21 26818196 26818511 -8089059 - AluJo SINE Alu -8 304 2 893 153 6 0 chr21 26820028 26820204 -8087366 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 185 250 0 0 chr21 26820208 26820248 -8087322 - L2 LINE L2 -23 3249 3210 1755 115 98 28 chr21 26820922 26821208 -8086362 + AluSg SINE Alu 5 310 0 267 322 61 0 chr21 26821241 26821356 -8086214 - L2 LINE L2 -5 3308 3187 324 0 0 0 chr21 26822053 26822089 -8085481 + (TG)n Simple_repeat Simple_repeat 1 36 0 417 187 27 2 chr21 26826596 26826684 -8080886 + MLT2D LTR ERVL 271 361 -38 369 320 0 6 chr21 26826701 26826882 -8080688 + (TA)n Simple_repeat Simple_repeat 1 180 0 294 29 0 0 chr21 26826954 26826989 -8080581 + (CA)n Simple_repeat Simple_repeat 2 36 0 689 269 27 5 chr21 26827059 26827245 -8080325 - LTR16A LTR ERVL -245 205 16 25 65 0 0 chr21 26827316 26827362 -8080208 + AT_rich Low_complexity Low_complexity 1 46 0 22 56 0 0 chr21 26831269 26831305 -8076265 + AT_rich Low_complexity Low_complexity 1 36 0 760 137 0 0 chr21 26831355 26831472 -8076098 - AluSg/x SINE Alu -4 305 189 2115 116 0 3 chr21 26831644 26831959 -8075611 + AluY SINE Alu 1 314 0 1379 73 0 6 chr21 26832820 26832984 -8074586 + AluSc SINE Alu 1 163 -146 2461 43 7 20 chr21 26833448 26833751 -8073819 + AluY SINE Alu 1 299 -12 669 144 50 4 chr21 26835304 26835814 -8071756 + (TAGA)n Simple_repeat Simple_repeat 1 533 0 362 294 88 77 chr21 26835843 26836261 -8071309 + L1MEd LINE L1 586 1008 -5111 646 307 55 35 chr21 26836321 26836832 -8070738 + HAL1 LINE L1 1249 1769 -738 2224 68 20 24 chr21 26836838 26837130 -8070440 + AluY SINE Alu 1 291 -20 533 270 18 18 chr21 26837772 26837998 -8069572 + L1MEd LINE L1 2294 2519 -3610 216 0 0 0 chr21 26840008 26840032 -8067538 + (TG)n Simple_repeat Simple_repeat 2 25 0 779 249 133 17 chr21 26840640 26841111 -8066459 + L2 LINE L2 2546 3070 -243 229 329 0 0 chr21 26841244 26841329 -8066241 + L2 LINE L2 3184 3268 -4 2404 86 7 0 chr21 26842140 26842442 -8065128 - AluY SINE Alu -7 304 1 212 330 44 0 chr21 26843456 26843547 -8064023 - MIR3 SINE MIR 0 208 114 344 254 78 14 chr21 26843758 26843900 -8063670 + MLT1J LTR MaLR 27 177 -334 244 221 83 55 chr21 26844015 26844160 -8063410 + MLT1J LTR MaLR 254 402 -109 839 250 30 25 chr21 26845185 26845385 -8062185 + MER63A DNA MER1_type 1 201 -9 1994 119 50 61 chr21 26845419 26845798 -8061772 + THE1C LTR MaLR 1 375 0 366 80 0 0 chr21 26846086 26846136 -8061434 + (GACTG)n Simple_repeat Simple_repeat 3 52 0 316 202 67 39 chr21 26848250 26848354 -8059216 + MIR3 SINE MIR 50 156 -52 200 167 0 19 chr21 26848808 26848862 -8058708 + CT-rich Low_complexity Low_complexity 2 54 0 205 246 33 0 chr21 26849678 26849739 -8057831 + (GTTTG)n Simple_repeat Simple_repeat 3 65 0 411 291 53 0 chr21 26850505 26850656 -8056914 - L2 LINE L2 -982 2332 2174 260 333 10 10 chr21 26850818 26850917 -8056653 + MLT1H LTR MaLR 126 224 -325 291 250 16 86 chr21 26851021 26851149 -8056421 + MLT1H LTR MaLR 431 549 0 490 123 50 29 chr21 26851844 26852191 -8055379 + (CA)n Simple_repeat Simple_repeat 1 354 0 313 122 65 9 chr21 26852208 26852315 -8055255 + (CA)n Simple_repeat Simple_repeat 1 113 0 493 79 49 49 chr21 26852408 26852572 -8054998 + (CA)n Simple_repeat Simple_repeat 1 164 0 250 138 25 38 chr21 26852584 26852664 -8054906 + (CA)n Simple_repeat Simple_repeat 1 79 0 458 101 57 25 chr21 26852691 26852849 -8054721 + (CA)n Simple_repeat Simple_repeat 2 164 0 1657 52 0 14 chr21 26853744 26853955 -8053615 + L1PA8 LINE L1 5965 6172 0 659 319 46 0 chr21 26854075 26854291 -8053279 + MIR SINE MIR 6 231 -31 321 331 66 30 chr21 26854297 26854463 -8053107 + L2 LINE L2 3101 3272 0 29 0 0 0 chr21 26854468 26854497 -8053073 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 26854748 26854771 -8052799 + AT_rich Low_complexity Low_complexity 1 23 0 488 124 22 11 chr21 26854830 26854919 -8052651 - L1PA8 LINE L1 0 6172 6083 2273 102 3 0 chr21 26855397 26855692 -8051878 - AluSx SINE Alu -5 307 12 28 0 0 0 chr21 26856144 26856172 -8051398 + AT_rich Low_complexity Low_complexity 1 28 0 1780 180 0 25 chr21 26857415 26857731 -8049839 - AluJb SINE Alu -4 308 1 3833 176 27 10 chr21 26858931 26859769 -8047801 + L1MB4 LINE L1 5298 6177 -3 1143 230 106 55 chr21 26859828 26860176 -8047394 - MLT1J LTR MaLR -141 370 5 495 290 31 19 chr21 26861557 26861719 -8045851 + MIR SINE MIR 4 167 -95 4102 165 32 25 chr21 26861724 26861906 -8045664 + L1MB2 LINE L1 5366 5545 -626 2686 85 19 22 chr21 26861906 26862271 -8045299 + THE1B LTR MaLR 1 364 0 4102 165 32 25 chr21 26862271 26862888 -8044682 + L1MB2 LINE L1 5545 6171 0 243 286 31 20 chr21 26862907 26863005 -8044565 + MIR SINE MIR 162 260 -2 365 330 45 22 chr21 26863813 26864037 -8043533 + L3 LINE CR1 1347 1575 -2 1936 162 40 3 chr21 26864355 26864701 -8042869 + L1MC2 LINE L1 5716 6074 -270 746 162 10 0 chr21 26864768 26864908 -8042662 + L1MC1 LINE L1 6059 6202 -131 2575 105 11 5 chr21 26865424 26865797 -8041773 + THE1C LTR MaLR 1 375 0 284 235 29 0 chr21 26866948 26867016 -8040554 + MIR SINE MIR 77 146 -62 22 56 0 0 chr21 26867088 26867124 -8040446 + AT_rich Low_complexity Low_complexity 1 36 0 216 216 0 0 chr21 26867295 26867346 -8040224 + (TG)n Simple_repeat Simple_repeat 2 52 0 470 286 49 0 chr21 26867621 26867806 -8039764 + MIR SINE MIR 46 239 -23 803 275 102 94 chr21 26867996 26868945 -8038625 + HAL1 LINE L1 94 1050 -1457 436 267 41 26 chr21 26868978 26869173 -8038397 + HAL1 LINE L1 1269 1466 -1041 1066 224 109 38 chr21 26869705 26869887 -8037683 + HAL1 LINE L1 2089 2257 -250 2191 133 36 25 chr21 26869887 26870247 -8037323 + THE1B LTR MaLR 1 364 0 1066 224 109 38 chr21 26870247 26870430 -8037140 + HAL1 LINE L1 2257 2480 -27 2108 160 11 11 chr21 26870611 26870961 -8036609 + MLT1A1 LTR MaLR 16 365 0 311 247 47 0 chr21 26871226 26871311 -8036259 + L1MC4a LINE L1 5562 5650 -471 406 250 0 0 chr21 26871351 26871447 -8036123 - MER5B DNA MER1_type -32 146 51 281 257 29 91 chr21 26871470 26871680 -8035890 + L1MC4a LINE L1 5710 5906 -1902 1697 174 3 11 chr21 26874366 26874653 -8032917 + AluJo SINE Alu 11 295 -17 2009 149 0 13 chr21 26875478 26875794 -8031776 + AluSx SINE Alu 1 312 0 520 182 18 129 chr21 26876896 26877066 -8030504 + MER106B DNA MER1_type 896 1046 -13 2073 124 3 10 chr21 26879836 26880142 -8027428 + AluSx SINE Alu 1 304 -8 1371 218 32 6 chr21 26880862 26881178 -8026392 + MER33 DNA MER1_type 1 324 0 283 326 37 0 chr21 26881305 26881440 -8026130 + MIR SINE MIR 44 183 -79 1972 123 22 0 chr21 26883677 26883977 -8023593 + AluSx SINE Alu 1 306 0 326 338 7 0 chr21 26890265 26890419 -8017151 + (CG)n Simple_repeat Simple_repeat 1 155 0 407 77 0 15 chr21 26890472 26890537 -8017033 + (GGA)n Simple_repeat Simple_repeat 1 64 0 239 176 14 81 chr21 26890604 26890678 -8016892 + G-rich Low_complexity Low_complexity 3 71 0 198 103 0 0 chr21 26892828 26892857 -8014713 + (GA)n Simple_repeat Simple_repeat 2 30 0 2673 62 50 0 chr21 26894882 26895220 -8012350 + THE1A LTR MaLR 1 355 0 234 274 20 48 chr21 26895400 26895500 -8012070 + MIR3 SINE MIR 71 169 -39 270 294 0 90 chr21 26895758 26895935 -8011635 + MER5B DNA MER1_type 6 166 -12 1261 178 58 68 chr21 26896037 26896167 -8011403 + AluJo SINE Alu 1 131 -181 2842 7 3 0 chr21 26896167 26896470 -8011100 + AluY SINE Alu 1 304 -7 1261 178 58 68 chr21 26896470 26896632 -8010938 + AluJo SINE Alu 131 290 -22 207 0 0 0 chr21 26898637 26898660 -8008910 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 213 246 15 0 chr21 26900728 26900793 -8006777 + (TA)n Simple_repeat Simple_repeat 1 66 0 231 385 108 0 chr21 26902352 26902482 -8005088 - L2 LINE L2 0 3272 3129 2074 117 4 0 chr21 26903249 26903579 -8003991 - AluY SINE Alu 0 331 1 207 0 0 0 chr21 26904839 26904862 -8002708 + (A)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr21 26906615 26906646 -8000924 + AT_rich Low_complexity Low_complexity 1 31 0 453 305 7 7 chr21 26906725 26906876 -8000694 - MIR SINE MIR -3 259 109 2237 71 7 14 chr21 26907005 26907329 -8000241 + AluY SINE Alu 1 322 0 419 271 62 8 chr21 26908040 26908169 -7999401 + MIR SINE MIR 79 214 -48 734 44 0 75 chr21 26908298 26908457 -7999113 + (GGGGA)n Simple_repeat Simple_repeat 5 151 0 2095 121 2 106 chr21 26909831 26910254 -7997316 - MLT1B LTR MaLR -11 379 1 1264 179 23 23 chr21 26910645 26910664 -7996906 - MER58B DNA MER1_type -2079 341 323 2464 129 83 5 chr21 26910664 26911059 -7996511 + MSTA LTR MaLR 1 426 -2 1264 179 23 23 chr21 26911059 26911301 -7996269 - MER58B DNA MER1_type -2096 324 80 353 248 60 8 chr21 26911307 26911424 -7996146 - MER58B DNA MER1_type -218 123 1 1915 153 46 22 chr21 26912213 26912579 -7994991 + THE1C LTR MaLR 1 375 0 180 77 0 0 chr21 26913943 26913969 -7993601 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1050 232 48 73 chr21 26914209 26914486 -7993084 - MLT1A2 LTR MaLR 0 374 106 2207 106 0 0 chr21 26914486 26914803 -7992767 + AluSx SINE Alu 1 317 0 1050 232 48 73 chr21 26914803 26914895 -7992675 - MLT1A2 LTR MaLR -268 106 13 742 202 0 0 chr21 26915291 26915415 -7992155 - FLAM_A SINE Alu -18 124 1 1657 171 31 17 chr21 26915692 26915979 -7991591 + AluJo SINE Alu 1 291 -21 22 0 0 0 chr21 26916430 26916452 -7991118 + AT_rich Low_complexity Low_complexity 1 22 0 2822 86 6 0 chr21 26916936 26917298 -7990272 - THE1B LTR MaLR 0 364 1 459 154 26 0 chr21 26917943 26918021 -7989549 + MER116 DNA Mariner 1 80 0 712 131 8 8 chr21 26919474 26919604 -7987966 + (TTCC)n Simple_repeat Simple_repeat 2 131 0 257 220 0 0 chr21 26919604 26919654 -7987916 + CT-rich Low_complexity Low_complexity 1 50 0 2362 240 22 37 chr21 26919880 26920006 -7987564 - L1ME3A LINE L1 0 6170 6044 1095 208 11 23 chr21 26920006 26920266 -7987304 + L1PA16 LINE L1 5910 6166 0 2362 240 22 37 chr21 26920266 26920592 -7986978 - L1ME3A LINE L1 -126 6044 5728 2477 25 0 0 chr21 26920592 26920878 -7986692 + L1PA4 LINE L1 5867 6152 -3 2362 240 22 37 chr21 26920878 26921071 -7986499 - L1ME3A LINE L1 -442 5728 5534 977 114 15 0 chr21 26921784 26921915 -7985655 + AluSq/x SINE Alu 1 133 -180 2398 85 20 0 chr21 26922031 26922336 -7985234 + AluY SINE Alu 1 311 0 971 198 121 12 chr21 26922578 26922826 -7984744 + LTR16A1 LTR ERVL 181 455 -2 578 293 34 21 chr21 26922827 26923243 -7984327 + L2 LINE L2 2325 2774 -540 222 219 0 0 chr21 26924777 26924818 -7982752 + (TG)n Simple_repeat Simple_repeat 1 41 0 2551 111 28 14 chr21 26926609 26926968 -7980602 - THE1B LTR MaLR 0 364 1 212 326 34 0 chr21 26927075 26927164 -7980406 + MIR SINE MIR 8 99 -163 856 215 5 16 chr21 26929339 26929525 -7978045 - MLT2F LTR ERVL 0 663 480 203 162 0 0 chr21 26929943 26929980 -7977590 - MIR SINE MIR -110 152 116 1191 221 29 76 chr21 26930298 26930679 -7976891 - MLT1A1 LTR MaLR -2 363 1 180 111 0 0 chr21 26931156 26931183 -7976387 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 2423 69 0 31 chr21 26932480 26932797 -7974773 - AluY SINE Alu -4 307 1 2169 123 7 0 chr21 26932894 26933195 -7974375 + AluSx SINE Alu 1 303 -9 202 200 0 0 chr21 26933870 26933910 -7973660 + CT-rich Low_complexity Low_complexity 5 44 0 564 302 18 22 chr21 26934366 26934591 -7972979 - L1ME LINE L1 -433 5688 5465 21 0 0 0 chr21 26935717 26935738 -7971832 + AT_rich Low_complexity Low_complexity 1 21 0 522 292 20 40 chr21 26935761 26936014 -7971556 + MIR SINE MIR 15 262 0 252 0 0 0 chr21 26936790 26936818 -7970752 + (TA)n Simple_repeat Simple_repeat 2 29 0 2197 128 3 0 chr21 26937153 26937457 -7970113 + AluSx SINE Alu 1 305 -7 774 288 40 51 chr21 26937597 26938049 -7969521 + L1ME4a LINE L1 5347 5793 -328 2058 146 16 30 chr21 26938566 26938746 -7968824 - MLT1A1 LTR MaLR 0 365 184 2216 158 14 68 chr21 26938746 26939066 -7968504 + LOR1b LTR ERV1 1 288 -173 2406 65 0 44 chr21 26939066 26939387 -7968183 + AluY SINE Alu 1 307 -4 2216 158 14 68 chr21 26939387 26939553 -7968017 + LOR1b LTR ERV1 288 461 0 2058 146 16 30 chr21 26939553 26939742 -7967828 - MLT1A1 LTR MaLR -181 184 1 299 326 0 0 chr21 26939760 26939849 -7967721 + GA-rich Low_complexity Low_complexity 3 91 0 2148 99 3 3 chr21 26940079 26940394 -7967176 - AluSq SINE Alu 0 315 1 391 222 59 33 chr21 26940584 26940737 -7966833 + L1ME4a LINE L1 5964 6120 -1 659 221 8 0 chr21 26941393 26941520 -7966050 + MER58B DNA MER1_type 214 341 0 263 135 77 19 chr21 26941650 26941702 -7965868 - MLT1L LTR MaLR -4 611 557 180 77 0 0 chr21 26942559 26942585 -7964985 + (G)n Simple_repeat Simple_repeat 1 26 0 203 86 0 29 chr21 26943794 26943829 -7963741 + (TTTTTA)n Simple_repeat Simple_repeat 3 36 0 1933 229 71 15 chr21 26944809 26945286 -7962284 + MLT1F LTR MaLR 26 549 -6 270 273 55 36 chr21 26946029 26946139 -7961431 + MIR3 SINE MIR 85 196 -12 720 206 7 0 chr21 26946674 26946815 -7960755 - LTR16C LTR ERVL 0 491 350 1823 200 93 32 chr21 26946816 26947290 -7960280 + MLT1D LTR MaLR 1 503 -2 659 249 70 20 chr21 26947290 26947479 -7960091 - LTR16C LTR ERVL -135 356 158 2474 61 0 7 chr21 26947561 26947858 -7959712 + AluY SINE Alu 1 295 -16 1373 207 32 81 chr21 26948898 26948965 -7958605 - MLT1C LTR MaLR 0 467 398 2290 123 0 0 chr21 26948965 26949275 -7958295 + AluSg SINE Alu 1 310 0 1373 207 32 81 chr21 26949275 26949290 -7958280 - MLT1C LTR MaLR -69 398 384 1683 136 140 0 chr21 26949290 26949562 -7958008 + AluSx SINE Alu 1 310 -2 1373 207 32 81 chr21 26949562 26949888 -7957682 - MLT1C LTR MaLR -83 384 78 312 246 0 0 chr21 26950042 26950107 -7957463 + LTR33 LTR ERVL 99 163 -358 233 217 58 14 chr21 26950115 26950184 -7957386 + MER116 DNA Mariner 1 72 -8 1561 189 10 26 chr21 26950498 26950805 -7956765 - MER61B LTR ERV1 0 425 124 1230 134 0 0 chr21 26951635 26951806 -7955764 - AluSp SINE Alu -13 300 130 808 55 128 0 chr21 26951809 26951918 -7955652 + AluSp SINE Alu 17 139 -174 492 188 9 54 chr21 26952171 26952283 -7955287 - MLT2E LTR ERVL -20 608 502 228 321 125 9 chr21 26952323 26952435 -7955135 - MLT2E LTR ERVL -208 420 296 296 206 15 15 chr21 26953218 26953286 -7954284 + MLT1D-int LTR MaLR 1 68 -1667 375 216 39 49 chr21 26953993 26954019 -7953551 - MLT2D LTR ERVL -11 403 378 567 112 0 0 chr21 26954019 26954108 -7953462 + (TAGA)n Simple_repeat Simple_repeat 3 91 0 375 216 39 49 chr21 26954108 26954183 -7953387 - MLT2D LTR ERVL -36 378 303 479 56 14 0 chr21 26954208 26954279 -7953291 + (TAGA)n Simple_repeat Simple_repeat 2 73 0 1792 170 108 15 chr21 26954279 26954636 -7952934 - MLT2D LTR ERVL -39 481 1 391 310 96 27 chr21 26955217 26955230 -7952340 + MLT1H LTR MaLR 80 91 -458 189 0 0 0 chr21 26955230 26955251 -7952319 + (CA)n Simple_repeat Simple_repeat 2 22 0 391 310 96 27 chr21 26955251 26955424 -7952146 + MLT1H LTR MaLR 91 279 -270 290 275 23 84 chr21 26955494 26955625 -7951945 + MLT1H LTR MaLR 390 512 -37 1977 184 40 3 chr21 26955632 26956006 -7951564 - MSTB1 LTR MaLR -4 428 41 230 81 27 0 chr21 26956006 26956043 -7951527 + (TTCC)n Simple_repeat Simple_repeat 2 39 0 294 203 0 0 chr21 26956043 26956102 -7951468 - MSTB1 LTR MaLR -333 99 41 846 136 11 33 chr21 26956127 26956311 -7951259 + CT-rich Low_complexity Low_complexity 1 180 0 656 219 67 0 chr21 26956311 26956475 -7951095 - FRAM SINE Alu -3 173 1 374 115 0 0 chr21 26956476 26956528 -7951042 - MSTB1 LTR MaLR -380 52 1 1264 264 54 39 chr21 26956748 26957268 -7950302 + L2 LINE L2 2357 2884 -430 1126 242 38 10 chr21 26957429 26957722 -7949848 + LTR16C LTR ERVL 187 487 -4 216 0 0 0 chr21 26957919 26957943 -7949627 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1781 116 52 8 chr21 26957946 26958214 -7949356 - AluSc SINE Alu -29 280 1 663 188 13 45 chr21 26958241 26958395 -7949175 + L2 LINE L2 3161 3309 -4 394 259 9 0 chr21 26958399 26958511 -7949059 + L2 LINE L2 2461 2573 -741 542 228 85 85 chr21 26958592 26958803 -7948767 - MIR SINE MIR -39 223 13 296 200 14 0 chr21 26958903 26958973 -7948597 - L1ME4a LINE L1 0 6121 6051 29 60 0 0 chr21 26960285 26960335 -7947235 + AT_rich Low_complexity Low_complexity 1 50 0 1547 192 38 38 chr21 26960343 26960708 -7946862 - MLT1A1 LTR MaLR 0 365 1 2361 85 0 13 chr21 26960795 26961100 -7946470 - AluSp SINE Alu -12 301 1 206 311 57 28 chr21 26961425 26961531 -7946039 - MIR3 SINE MIR -87 121 13 222 37 0 0 chr21 26961594 26961621 -7945949 + (T)n Simple_repeat Simple_repeat 1 27 0 1609 190 30 10 chr21 26962717 26963012 -7944558 - AluJo SINE Alu -11 301 1 2366 61 0 0 chr21 26963023 26963347 -7944223 - AluSg SINE Alu 0 324 1 611 76 11 22 chr21 26964539 26964631 -7942939 + MER4A LTR ERV1 1 91 -573 1740 152 6 39 chr21 26964628 26964709 -7942861 + MER4A LTR ERV1 266 348 -316 2220 104 7 0 chr21 26964709 26965006 -7942564 - AluSq SINE Alu -11 302 4 1740 152 6 39 chr21 26965006 26965276 -7942294 + MER4A LTR ERV1 348 664 0 605 283 47 14 chr21 26966266 26966478 -7941092 + MIR SINE MIR 1 219 -43 2191 136 0 0 chr21 26966818 26967126 -7940444 + AluSx SINE Alu 5 312 0 992 215 40 100 chr21 26967434 26967755 -7939815 - MLT1A1 LTR MaLR 0 365 64 1971 130 57 39 chr21 26967755 26968165 -7939405 + THE1B LTR MaLR 1 364 0 446 337 31 0 chr21 26968227 26968423 -7939147 - MIR SINE MIR -59 203 2 32 0 0 0 chr21 26968961 26968993 -7938577 + AT_rich Low_complexity Low_complexity 1 32 0 224 236 0 18 chr21 26969121 26969176 -7938394 - L2 LINE L2 -5 3308 3255 702 149 10 0 chr21 26969938 26970243 -7937327 + (TA)n Simple_repeat Simple_repeat 1 308 0 300 200 0 0 chr21 26970274 26970339 -7937231 + CT-rich Low_complexity Low_complexity 2 66 0 241 271 29 0 chr21 26971871 26971941 -7935629 + MER103 DNA DNA 17 88 -78 1059 105 0 0 chr21 26972449 26972774 -7934796 + (TC)n Simple_repeat Simple_repeat 1 325 0 279 154 0 0 chr21 26972775 26972840 -7934730 + CT-rich Low_complexity Low_complexity 2 66 0 21 0 0 0 chr21 26972875 26972896 -7934674 + AT_rich Low_complexity Low_complexity 1 21 0 2209 115 0 0 chr21 26973008 26973304 -7934266 - AluSg SINE Alu -14 296 1 2624 55 0 10 chr21 26974002 26974312 -7933258 - AluY SINE Alu -4 307 1 2054 130 7 13 chr21 26974987 26975294 -7932276 + AluSx SINE Alu 1 305 -7 325 296 59 20 chr21 26975444 26975596 -7931974 + MIR SINE MIR 86 243 -19 1984 164 3 3 chr21 26975623 26975933 -7931637 + AluJb SINE Alu 1 310 -2 521 281 15 50 chr21 26975952 26976101 -7931469 - MIR SINE MIR -21 241 99 2015 139 49 30 chr21 26976101 26976469 -7931101 + THE1C LTR MaLR 1 375 0 521 281 15 50 chr21 26976469 26976518 -7931052 - MIR SINE MIR -163 99 50 1485 204 34 39 chr21 26976723 26976800 -7930770 + Tigger6 DNA MER2_type 1199 1275 -322 2518 134 46 12 chr21 26976800 26977210 -7930360 - MSTA LTR MaLR -4 424 1 1485 204 34 39 chr21 26977210 26977519 -7930051 + Tigger6 DNA MER2_type 1275 1583 -14 2325 110 7 0 chr21 26977803 26978113 -7929457 - AluSx SINE Alu 0 312 1 402 263 79 26 chr21 26978199 26978351 -7929219 - MIR SINE MIR -78 184 25 2338 108 0 3 chr21 26978694 26979008 -7928562 - AluSq SINE Alu 0 313 1 196 362 21 11 chr21 26979319 26979413 -7928157 + MIR SINE MIR 29 123 -139 2405 144 35 5 chr21 26979468 26979892 -7927678 - LTR56 LTR ERV1 0 445 9 1507 181 14 35 chr21 26979983 26980292 -7927278 + AluJo SINE Alu 9 311 0 359 202 117 0 chr21 26980299 26980393 -7927177 - L2 LINE L2 -27 3286 3182 1552 141 170 67 chr21 26980508 26980665 -7926905 + MSTA LTR MaLR 8 147 -281 2273 83 10 0 chr21 26980665 26980955 -7926615 + AluSc SINE Alu 1 293 -16 1552 141 170 67 chr21 26980955 26981173 -7926397 + MSTA LTR MaLR 147 422 -6 430 234 9 0 chr21 26981214 26981325 -7926245 - L2 LINE L2 -339 2974 2863 192 40 0 0 chr21 26982934 26982959 -7924611 + (TC)n Simple_repeat Simple_repeat 2 26 0 1548 170 24 21 chr21 26983688 26983976 -7923594 + AluJo SINE Alu 2 290 -22 234 200 0 0 chr21 26984073 26984118 -7923452 - L1M4 LINE L1 -2195 3951 3907 472 239 51 0 chr21 26984257 26984374 -7923196 + L2 LINE L2 3178 3300 -13 1296 175 35 0 chr21 26984625 26984853 -7922717 - MER46A DNA MER2_type 0 236 1 2439 35 0 17 chr21 26985870 26986188 -7921382 - AluY SINE Alu 0 313 1 1453 291 47 14 chr21 26986190 26986785 -7920785 - L1ME3A LINE L1 -226 5944 5330 1048 196 127 27 chr21 26986796 26987056 -7920514 - AluJo SINE Alu -6 306 21 1112 114 0 0 chr21 26987087 26987278 -7920292 - AluY SINE Alu 0 323 133 956 172 0 0 chr21 26987396 26987541 -7920029 - AluJ SINE Alu -11 301 157 619 162 0 19 chr21 26987683 26987788 -7919782 - AluJ SINE Alu -149 163 61 207 100 0 0 chr21 26988733 26988763 -7918807 + (CA)n Simple_repeat Simple_repeat 1 30 0 192 304 14 0 chr21 26989823 26989892 -7917678 - MIR SINE MIR -70 192 123 2076 165 58 0 chr21 26989929 26990292 -7917278 + MLT1B LTR MaLR 7 390 0 2011 135 0 10 chr21 26990661 26990957 -7916613 - AluJo SINE Alu -19 293 1 1109 267 72 11 chr21 26990963 26991326 -7916244 - HAL1 LINE L1 -839 1668 1284 669 259 47 80 chr21 26991340 26991580 -7915990 - HAL1 LINE L1 -1246 1261 1031 2000 31 9 0 chr21 26991580 26991808 -7915762 - AluY SINE Alu -12 299 70 669 259 47 80 chr21 26991808 26991868 -7915702 - HAL1 LINE L1 -1476 1031 971 2089 204 50 32 chr21 26991915 26992164 -7915406 - L1MB7 LINE L1 -16 6168 5904 2337 104 0 3 chr21 26992164 26992463 -7915107 - AluSq SINE Alu -15 298 1 2089 204 50 32 chr21 26992463 26992688 -7914882 - L1MB7 LINE L1 -280 5904 5685 2039 70 0 0 chr21 26992906 26993164 -7914406 - L1PA7 LINE L1 -4 6150 5893 1887 167 0 3 chr21 26993190 26993490 -7914080 - AluSx SINE Alu -13 299 1 2450 74 0 3 chr21 26993888 26994185 -7913385 - AluY SINE Alu -15 296 1 221 321 109 0 chr21 26995206 26995343 -7912227 - MIR3 SINE MIR 0 208 57 1532 207 41 73 chr21 26995559 26995999 -7911571 + MLT1C LTR MaLR 34 459 -8 1840 141 0 50 chr21 26996116 26996443 -7911127 + AluJb SINE Alu 1 312 0 1216 134 9 69 chr21 26997913 26998145 -7909425 + MER20 DNA MER1_type 1 218 -1 302 78 0 20 chr21 26998584 26998635 -7908935 + (CA)n Simple_repeat Simple_repeat 2 51 0 1712 79 24 4 chr21 27001018 27001271 -7906299 - L1M1 LINE L1 -5291 2274 2017 465 330 27 21 chr21 27001274 27001462 -7906108 + MIR SINE MIR 25 213 -49 2073 112 0 0 chr21 27001887 27002173 -7905397 + AluSx SINE Alu 1 286 -26 230 210 0 32 chr21 27002479 27002541 -7905029 + GA-rich Low_complexity Low_complexity 1 60 0 459 311 50 0 chr21 27004924 27005085 -7902485 + MLT1J2 LTR MaLR 267 435 -15 2264 201 49 22 chr21 27006056 27006548 -7901022 + MLT1D LTR MaLR 1 505 0 203 319 126 7 chr21 27006811 27006946 -7900624 + L2 LINE L2 2578 2728 -586 740 166 86 1 chr21 27006988 27007165 -7900405 + MER30 DNA MER1_type 16 230 0 1300 197 76 69 chr21 27007199 27007661 -7899909 + MER110A LTR ERV1 4 468 0 2024 192 36 59 chr21 27007743 27007885 -7899685 + MLT1D LTR MaLR 7 151 -354 2426 141 70 7 chr21 27007885 27008288 -7899282 + MSTA LTR MaLR 1 428 0 2024 192 36 59 chr21 27008288 27008651 -7898919 + MLT1D LTR MaLR 151 500 -5 2075 122 0 3 chr21 27008833 27009137 -7898433 - AluSp SINE Alu -10 303 1 2132 112 0 0 chr21 27010079 27010375 -7897195 + AluY SINE Alu 1 296 -15 1802 178 42 6 chr21 27010376 27010797 -7896773 - L1MB5 LINE L1 -9 6165 5666 1968 142 3 7 chr21 27010797 27011106 -7896464 - AluJo SINE Alu -4 308 1 1802 178 42 6 chr21 27011106 27011189 -7896381 - L1MB5 LINE L1 -508 5666 5587 220 319 58 51 chr21 27011194 27011332 -7896238 - MIR3 SINE MIR -60 148 10 319 246 0 52 chr21 27012003 27012137 -7895433 - L1M4 LINE L1 -3044 3102 2976 210 71 0 0 chr21 27012142 27012170 -7895400 + (TTTC)n Simple_repeat Simple_repeat 3 30 0 1973 74 4 4 chr21 27012179 27012435 -7895135 - AluY SINE Alu -55 256 1 354 178 27 0 chr21 27012439 27012512 -7895058 - L1M4 LINE L1 -3180 2966 2892 1464 198 55 12 chr21 27012515 27012859 -7894711 - MLT1H1 LTR MaLR 0 555 197 1959 158 66 6 chr21 27013019 27013385 -7894185 + MLT1B LTR MaLR 3 390 0 395 306 65 39 chr21 27013388 27013426 -7894144 - L1M4 LINE L1 -3246 2900 2864 2105 132 0 0 chr21 27013426 27013728 -7893842 - AluSg SINE Alu -8 302 1 395 306 65 39 chr21 27013728 27013918 -7893652 - L1M4 LINE L1 -3282 2864 2666 701 171 8 0 chr21 27013970 27014087 -7893483 - MER89 LTR ERV1 0 559 442 1653 181 7 0 chr21 27014229 27014528 -7893042 + AluJb SINE Alu 3 303 -9 436 219 134 17 chr21 27015106 27015225 -7892345 - MIR SINE MIR -76 186 54 24 0 0 0 chr21 27015361 27015385 -7892185 + AT_rich Low_complexity Low_complexity 1 24 0 305 299 58 15 chr21 27017870 27018007 -7889563 + MIR3 SINE MIR 12 154 -54 2167 204 52 14 chr21 27018022 27018521 -7889049 + Charlie1b DNA MER1_type 5 522 -1 402 307 33 57 chr21 27018579 27018791 -7888779 + L2 LINE L2 3080 3286 -27 347 318 50 58 chr21 27019039 27019297 -7888273 - ERVL LTR ERVL -3737 2027 1772 14808 132 36 12 chr21 27019991 27022351 -7885219 - Tigger1 DNA MER2_type 0 2418 3 447 291 86 7 chr21 27022675 27022826 -7884744 + MLT1J LTR MaLR 81 243 -268 1821 163 0 7 chr21 27022993 27023300 -7884270 - AluSx SINE Alu -7 305 1 368 311 197 6 chr21 27023782 27023965 -7883605 + L3 LINE CR1 575 792 -785 793 295 157 31 chr21 27023994 27024133 -7883437 - L2 LINE L2 -1 3312 3192 1779 120 8 0 chr21 27024133 27024400 -7883170 + AluSx SINE Alu 44 312 0 793 295 157 31 chr21 27024400 27025074 -7882496 - L2 LINE L2 -121 3192 2398 1321 139 53 0 chr21 27025611 27025820 -7881750 - AluJb SINE Alu -6 306 87 832 233 159 12 chr21 27026407 27026733 -7880837 - MLT1D LTR MaLR -46 459 86 1743 131 51 0 chr21 27026733 27027008 -7880562 - AluSq SINE Alu -24 289 1 183 194 0 0 chr21 27027414 27027445 -7880125 + MIR SINE MIR 80 110 -152 738 290 94 24 chr21 27027703 27028044 -7879526 - L2 LINE L2 -4 3309 2945 436 230 35 0 chr21 27028156 27028269 -7879301 - L2 LINE L2 -530 2784 2668 1215 185 11 78 chr21 27028793 27029135 -7878435 + L1MB8 LINE L1 5771 6096 -82 1991 118 0 23 chr21 27029135 27029439 -7878131 - AluSx SINE Alu -2 310 14 1896 165 73 0 chr21 27029530 27029870 -7877700 + MLT1A1 LTR MaLR 1 365 0 616 184 28 0 chr21 27030218 27030327 -7877243 - MER45A DNA AcHobo 0 178 67 530 270 17 35 chr21 27031226 27031400 -7876170 + MIR3 SINE MIR 30 200 -8 228 241 30 21 chr21 27031581 27031732 -7875838 - MIR SINE MIR -13 249 20 237 197 0 45 chr21 27035132 27035198 -7872372 + C-rich Low_complexity Low_complexity 1 63 0 385 209 6 37 chr21 27035213 27035376 -7872194 + C-rich Low_complexity Low_complexity 2 159 0 347 41 20 0 chr21 27038061 27038110 -7869460 + (TG)n Simple_repeat Simple_repeat 2 51 0 226 136 169 0 chr21 27038648 27038707 -7868863 - Charlie5 DNA MER1_type -189 2423 2355 344 331 23 15 chr21 27039640 27039770 -7867800 + MIR3 SINE MIR 15 145 -63 857 211 0 22 chr21 27041316 27041496 -7866074 - FRAM SINE Alu 0 176 1 2068 88 3 7 chr21 27041980 27042265 -7865305 + AluSg SINE Alu 1 284 -26 264 30 0 0 chr21 27044652 27044685 -7862885 + (TG)n Simple_repeat Simple_repeat 2 34 0 1881 109 14 32 chr21 27045130 27045414 -7862156 + AluSx SINE Alu 1 279 -33 1067 121 0 6 chr21 27045417 27045590 -7861980 + (GGAA)n Simple_repeat Simple_repeat 3 174 0 309 282 86 17 chr21 27046088 27046205 -7861365 + L2 LINE L2 3189 3313 0 1190 190 40 43 chr21 27046687 27046987 -7860583 + MER33 DNA MER1_type 26 324 0 218 310 35 26 chr21 27047483 27047599 -7859971 + MIR3 SINE MIR 15 131 -77 268 268 99 0 chr21 27048279 27048350 -7859220 - L2 LINE L2 -31 3282 3205 1394 226 82 18 chr21 27048405 27048795 -7858775 - L1ME3 LINE L1 0 6162 5748 193 161 0 0 chr21 27050144 27050175 -7857395 - MIR SINE MIR -119 143 113 21 0 0 0 chr21 27052896 27052917 -7854653 + AT_rich Low_complexity Low_complexity 1 21 0 228 35 0 0 chr21 27053097 27053126 -7854444 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 354 221 13 0 chr21 27054241 27054318 -7853252 + MER116 DNA Mariner 3 80 0 2844 173 139 6 chr21 27054887 27054934 -7852636 - Charlie1a DNA MER1_type -1337 1424 1385 834 192 104 16 chr21 27054934 27055127 -7852443 - MER63A DNA MER1_type 0 210 1 2844 173 139 6 chr21 27055127 27055806 -7851764 - Charlie1a DNA MER1_type -1376 1385 601 1707 200 98 77 chr21 27056086 27056378 -7851192 - Charlie1a DNA MER1_type -2178 583 299 1632 148 93 0 chr21 27056378 27056648 -7850922 + AluSx SINE Alu 1 295 -17 1707 200 98 77 chr21 27056648 27056925 -7850645 - Charlie1a DNA MER1_type -2462 299 2 1696 193 0 0 chr21 27057252 27057542 -7850028 - AluJo SINE Alu -22 290 1 321 26 0 0 chr21 27057778 27057816 -7849754 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 7925 12 4 0 chr21 27057816 27059114 -7848456 - L1PA3 LINE L1 -16 6139 4841 9845 30 0 0 chr21 27059114 27060262 -7847308 + L1PA3 LINE L1 3688 4835 -1311 303 224 75 65 chr21 27060477 27060584 -7846986 + MIR SINE MIR 32 139 -123 414 225 33 33 chr21 27061736 27061856 -7845714 - MIR SINE MIR -39 223 104 272 311 11 0 chr21 27062564 27062654 -7844916 + (CA)n Simple_repeat Simple_repeat 2 92 0 237 260 0 0 chr21 27062678 27062755 -7844815 + (CA)n Simple_repeat Simple_repeat 1 77 0 1824 168 2 88 chr21 27062830 27063253 -7844317 - MLT1B LTR MaLR 0 390 4 498 171 0 0 chr21 27063278 27063366 -7844204 - L1M1 LINE L1 -686 5617 5530 3879 191 43 21 chr21 27063369 27064285 -7843285 - L1M1 LINE L1 -753 5393 4458 1820 128 53 4 chr21 27065429 27065710 -7841860 + AluSx SINE Alu 1 295 -17 2296 58 6 16 chr21 27065964 27066277 -7841293 + AluY SINE Alu 1 310 -1 402 21 0 0 chr21 27067192 27067239 -7840331 + (CA)n Simple_repeat Simple_repeat 2 48 0 324 229 0 14 chr21 27067775 27067845 -7839725 - L2 LINE L2 -212 3060 2992 356 293 120 47 chr21 27068328 27068628 -7838942 + L2 LINE L2 2381 2702 -612 410 276 0 9 chr21 27069416 27069532 -7838038 - MER5B DNA MER1_type -63 115 1 1806 134 3 36 chr21 27069815 27070120 -7837450 - AluSx SINE Alu -13 299 5 797 237 64 26 chr21 27070302 27070753 -7836817 - MLT1D LTR MaLR 0 505 1 2278 244 29 16 chr21 27071273 27071887 -7835683 + MLT1E2 LTR MaLR 1 622 -4 1406 195 12 102 chr21 27072076 27072487 -7835083 + MLT1A2 LTR MaLR 1 374 0 3163 206 72 18 chr21 27072690 27072760 -7834810 - L1ME2 LINE L1 0 6164 6099 2251 152 105 5 chr21 27072760 27073149 -7834421 - MSTA LTR MaLR 0 428 1 3163 206 72 18 chr21 27073149 27073924 -7833646 - L1ME2 LINE L1 -65 6099 5273 413 235 59 0 chr21 27073935 27074020 -7833550 - Tigger5 DNA MER2_type 0 2323 2234 456 122 12 12 chr21 27074061 27074143 -7833427 - L1ME2 LINE L1 -922 5224 5143 1619 151 104 38 chr21 27074150 27074495 -7833075 + THE1C LTR MaLR 8 375 0 734 284 23 20 chr21 27074587 27074890 -7832680 - L1ME2 LINE L1 -1070 5076 4773 1064 146 52 1 chr21 27074895 27075204 -7832366 - THE1B LTR MaLR 0 364 1 1474 200 59 14 chr21 27075207 27075632 -7831938 - L1ME2 LINE L1 -1377 4769 4326 550 282 36 55 chr21 27075976 27076284 -7831286 - L1ME LINE L1 -344 5777 5476 555 154 0 36 chr21 27076510 27076620 -7830950 - MSTD LTR MaLR -290 106 1 1143 157 105 0 chr21 27078082 27078311 -7829259 - L1MA9 LINE L1 -8 6304 6052 1534 185 20 0 chr21 27078365 27078668 -7828902 - AluJb SINE Alu -3 309 1 279 305 74 35 chr21 27078673 27078876 -7828694 - HAL1 LINE L1 0 2507 2297 974 164 0 45 chr21 27078919 27079096 -7828474 + MLT1D LTR MaLR 21 189 -316 1650 181 72 16 chr21 27079124 27079500 -7828070 + MLT1D LTR MaLR 109 505 0 1248 275 67 29 chr21 27079883 27080864 -7826706 - HAL1 LINE L1 -678 1829 769 325 306 80 66 chr21 27081158 27081521 -7826049 - HAL1 LINE L1 -2130 377 10 2003 110 0 3 chr21 27081535 27081817 -7825753 + AluSq SINE Alu 1 281 -32 252 0 0 0 chr21 27081819 27081847 -7825723 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 943 280 102 22 chr21 27082040 27082492 -7825078 + L2 LINE L2 2556 3053 -260 318 315 11 0 chr21 27082754 27082846 -7824724 - MER5A DNA MER1_type -87 102 10 631 281 67 22 chr21 27083273 27083497 -7824073 - MIR SINE MIR -3 259 26 684 263 8 42 chr21 27083631 27083867 -7823703 + L1MCb LINE L1 346 573 -5334 2512 227 51 44 chr21 27083881 27085213 -7822357 + L1MCb LINE L1 1130 2639 -3787 1445 191 48 31 chr21 27085234 27085585 -7821985 + L1MC2 LINE L1 5988 6344 0 1693 184 7 0 chr21 27085589 27085893 -7821677 + AluJo SINE Alu 1 306 -6 186 43 0 0 chr21 27085901 27085924 -7821646 + (GGAA)n Simple_repeat Simple_repeat 2 24 0 464 231 113 96 chr21 27088310 27088539 -7819031 - L2 LINE L2 0 3313 3081 325 200 0 14 chr21 27089458 27089528 -7818042 - L2 LINE L2 -212 3060 2992 183 188 188 16 chr21 27089533 27089597 -7817973 + MER5A DNA MER1_type 1 75 -114 228 115 0 77 chr21 27089701 27089753 -7817817 + (GGAAA)n Simple_repeat Simple_repeat 4 51 0 273 167 0 0 chr21 27090286 27090340 -7817230 + (TA)n Simple_repeat Simple_repeat 1 54 0 538 225 18 0 chr21 27090527 27090638 -7816932 - L2 LINE L2 0 3313 3201 320 179 0 0 chr21 27091069 27091125 -7816445 + MIR SINE MIR 83 138 -124 678 155 52 13 chr21 27091221 27091376 -7816194 - MER96B DNA MER1_type? -176 241 81 514 204 0 0 chr21 27091376 27091469 -7816101 + AluJ/FLAM SINE Alu 2 94 -218 593 247 96 0 chr21 27091490 27091636 -7815934 - MIR SINE MIR -91 171 12 283 301 41 7 chr21 27094053 27094199 -7813371 + CT-rich Low_complexity Low_complexity 1 151 0 2155 145 38 8 chr21 27094201 27094566 -7813004 + MSTD LTR MaLR 1 376 -20 247 211 0 19 chr21 27094928 27094980 -7812590 + GA-rich Low_complexity Low_complexity 5 55 0 7992 164 14 32 chr21 27095183 27095916 -7811654 + L1MA8 LINE L1 3801 4545 -1767 2013 124 3 7 chr21 27095916 27096215 -7811355 + AluSg SINE Alu 1 298 -12 7992 164 14 32 chr21 27096215 27096818 -7810752 + L1MA8 LINE L1 4545 5157 -1155 2164 89 4 0 chr21 27096818 27097154 -7810416 + AluSg SINE Alu 1 337 0 7992 164 14 32 chr21 27097154 27097816 -7809754 + L1MA8 LINE L1 5157 5777 -535 741 161 47 13 chr21 27097846 27097995 -7809575 - MSTD LTR MaLR -47 349 196 2918 145 17 0 chr21 27098001 27098469 -7809101 + L1MA8 LINE L1 5816 6291 0 572 264 104 16 chr21 27098979 27099172 -7808398 + MIR SINE MIR 31 240 -22 5713 148 32 55 chr21 27099233 27099751 -7807819 - L1MA9 LINE L1 0 6312 5784 291 93 0 0 chr21 27099751 27099794 -7807776 + (TG)n Simple_repeat Simple_repeat 2 44 0 5713 148 32 55 chr21 27099794 27100750 -7806820 - L1MA9 LINE L1 -528 5784 4876 1393 227 65 13 chr21 27100754 27101141 -7806429 - Charlie4a DNA MER1_type -68 440 34 852 146 132 21 chr21 27101622 27101766 -7805804 - AluJo SINE Alu -3 309 150 1912 147 147 11 chr21 27101768 27102129 -7805441 + MSTA LTR MaLR 1 410 -18 979 139 0 25 chr21 27102139 27102297 -7805273 - AluJo SINE Alu -158 154 1 477 272 62 31 chr21 27102591 27102786 -7804784 + MLT1K LTR MaLR 378 578 -10 2448 18 7 4 chr21 27103822 27104142 -7803428 + AluY SINE Alu 1 321 0 1134 215 61 7 chr21 27104974 27105267 -7802303 + MLT1C LTR MaLR 6 314 -153 409 210 32 18 chr21 27105288 27105397 -7802173 + MLT1D LTR MaLR 276 498 -7 595 276 9 55 chr21 27106767 27106984 -7800586 - L1ME3 LINE L1 -1 6161 5955 1843 250 38 6 chr21 27106997 27107563 -7800007 - L1ME3 LINE L1 -314 5997 5410 911 211 10 29 chr21 27107574 27107783 -7799787 - MER58A DNA MER1_type -19 205 1 266 283 65 0 chr21 27107790 27107882 -7799688 - L1ME3 LINE L1 -993 5420 5323 330 298 106 14 chr21 27108487 27108628 -7798942 - MIR SINE MIR -108 154 1 429 301 30 36 chr21 27108642 27108808 -7798762 - MIR3 SINE MIR -13 195 31 2123 257 66 47 chr21 27110203 27111244 -7796326 - L1ME3 LINE L1 -2754 3461 2441 2222 161 5 53 chr21 27111244 27111660 -7795910 + L1PA16 LINE L1 5764 6159 -7 2123 257 66 47 chr21 27111660 27112152 -7795418 - L1ME3 LINE L1 -3774 2441 1960 2135 136 7 0 chr21 27112152 27112462 -7795108 + AluSx SINE Alu 1 312 0 2123 257 66 47 chr21 27112462 27113205 -7794365 - L1ME3 LINE L1 -4255 1960 1110 3305 130 90 12 chr21 27113225 27113803 -7793767 + LTR48B LTR ERV1 22 644 0 1778 180 28 87 chr21 27113805 27114282 -7793288 + LTR48B-int LTR ERV1 1 2562 -4856 4312 198 45 29 chr21 27114296 27115242 -7792328 + LTR48B-int LTR ERV1 355 1457 -4489 302 140 40 0 chr21 27115950 27116000 -7791570 + LTR48B-int LTR ERV1 1602 1653 -4678 436 239 17 8 chr21 27116079 27116196 -7791374 + LTR48B-int LTR ERV1 443 560 -4376 778 262 32 5 chr21 27116266 27116453 -7791117 + LTR48B-int LTR ERV1 1909 2100 -4231 1526 140 30 60 chr21 27116488 27116823 -7790747 + LTR48B-int LTR ERV1 2948 3272 -3059 533 129 24 0 chr21 27116877 27116962 -7790608 + LTR48B-int LTR ERV1 3264 3350 -2981 610 179 0 0 chr21 27117009 27117115 -7790455 + LTR48B-int LTR ERV1 3348 3453 -2878 1550 181 3 83 chr21 27117288 27117625 -7789945 + AluJb SINE Alu 1 310 -2 357 203 56 42 chr21 27117630 27117773 -7789797 + LTR48B-int LTR ERV1 1722 1866 -3257 6795 182 67 50 chr21 27117769 27119450 -7788120 + LTR48B-int LTR ERV1 4614 6323 -8 1800 119 68 37 chr21 27119453 27120000 -7787570 + LTR48B LTR ERV1 5 610 -34 348 257 35 42 chr21 27120008 27120152 -7787418 - L1ME3 LINE L1 -5140 1078 936 751 306 62 53 chr21 27120171 27120219 -7787351 - L1ME3 LINE L1 -5453 943 897 2940 80 11 16 chr21 27120219 27120596 -7786974 - THE1C LTR MaLR 0 375 1 751 306 62 53 chr21 27120596 27121270 -7786300 - L1ME3 LINE L1 -5499 897 214 454 276 116 22 chr21 27121455 27121723 -7785847 - L1M4 LINE L1 -2848 3298 3006 3933 162 76 5 chr21 27121809 27122582 -7784988 - L1MB7 LINE L1 0 6184 5357 686 149 0 0 chr21 27122647 27122754 -7784816 - L1MB7 LINE L1 -1140 5006 4900 740 224 50 59 chr21 27125224 27125545 -7782025 + L1MC5 LINE L1 7606 7923 -38 21 36 0 0 chr21 27125592 27125620 -7781950 + AT_rich Low_complexity Low_complexity 1 28 0 389 318 50 50 chr21 27125763 27126046 -7781524 + L1M4 LINE L1 3590 3872 -2274 25 0 0 0 chr21 27126658 27126683 -7780887 + AT_rich Low_complexity Low_complexity 1 25 0 311 267 0 0 chr21 27127734 27127794 -7779776 - L2 LINE L2 -8 3264 3205 3839 191 40 50 chr21 27127853 27128761 -7778809 + L1ME2 LINE L1 5263 6161 -3 1955 169 60 17 chr21 27129464 27129520 -7778050 + MLT1A1 LTR MaLR 1 53 -312 2419 125 33 25 chr21 27129520 27129881 -7777689 + THE1B LTR MaLR 1 364 0 1955 169 60 17 chr21 27129881 27130174 -7777396 + MLT1A1 LTR MaLR 53 365 0 916 284 26 36 chr21 27130530 27130914 -7776656 + L2 LINE L2 2805 3184 -129 321 367 48 14 chr21 27130954 27131101 -7776469 + L2 LINE L2 3121 3272 0 2789 145 21 23 chr21 27131132 27131567 -7776003 - Tigger2a DNA MER2_type 0 434 1 195 231 0 0 chr21 27133136 27133175 -7774395 - L2 LINE L2 -9 3304 3266 315 0 0 0 chr21 27133629 27133664 -7773906 + (TG)n Simple_repeat Simple_repeat 2 36 0 1482 189 12 81 chr21 27134248 27134581 -7772989 + MLT2B1 LTR ERVL 155 464 -56 399 73 0 0 chr21 27134586 27134641 -7772929 + (TAGA)n Simple_repeat Simple_repeat 3 57 0 2733 123 12 10 chr21 27134736 27135141 -7772429 - LTR9B LTR ERV1 0 644 239 183 225 0 0 chr21 27135151 27135222 -7772348 + C-rich Low_complexity Low_complexity 1 71 0 199 229 148 0 chr21 27135403 27135464 -7772106 + MIR SINE MIR 65 134 -128 2679 30 3 0 chr21 27135865 27136165 -7771405 - AluY SINE Alu -6 305 5 3373 152 91 3 chr21 27137542 27138114 -7769456 + LTR29 LTR ERV1 1 622 0 320 222 111 19 chr21 27138121 27138229 -7769341 + L2 LINE L2 3146 3263 -9 507 297 62 27 chr21 27141094 27141353 -7766217 - L3 LINE CR1 -546 1031 764 225 381 21 21 chr21 27141436 27141533 -7766037 - L3 LINE CR1 -1044 533 437 495 288 18 41 chr21 27141534 27141704 -7765866 - MIR3 SINE MIR -10 198 33 2061 173 7 31 chr21 27141838 27142259 -7765311 + L1MB7 LINE L1 5751 6161 -23 333 57 63 88 chr21 27143196 27143355 -7764215 + (CACAA)n Simple_repeat Simple_repeat 5 159 0 216 178 44 50 chr21 27143389 27143569 -7764001 + (CACAA)n Simple_repeat Simple_repeat 1 179 0 496 110 81 23 chr21 27143572 27143920 -7763650 + (CA)n Simple_repeat Simple_repeat 1 367 0 330 143 0 0 chr21 27143947 27144010 -7763560 + (TC)n Simple_repeat Simple_repeat 1 63 0 321 341 0 0 chr21 27144850 27144941 -7762629 - L1MC4 LINE L1 -1339 6703 6613 403 324 116 0 chr21 27145789 27145962 -7761608 + MIR SINE MIR 50 242 -20 1039 89 6 22 chr21 27146145 27146225 -7761345 + (GGAA)n Simple_repeat Simple_repeat 1 254 0 1039 89 6 22 chr21 27146225 27146404 -7761166 + (GGAA)n Simple_repeat Simple_repeat 3 178 0 245 109 0 87 chr21 27146717 27146763 -7760807 + L2 LINE L2 3272 3313 0 2460 90 3 0 chr21 27147153 27147453 -7760117 - AluSp SINE Alu -12 301 1 310 314 52 83 chr21 27147583 27147812 -7759758 + HAL1 LINE L1 2226 2447 -60 1510 155 0 0 chr21 27149843 27150069 -7757501 - AluJo SINE Alu 0 312 87 342 176 0 8 chr21 27151144 27151256 -7756314 + L1MB3 LINE L1 5739 5865 -318 5262 113 19 2 chr21 27151824 27152629 -7754941 - L1PA13 LINE L1 0 6163 5346 2481 54 3 3 chr21 27153693 27153989 -7753581 + AluY SINE Alu 1 296 -15 430 328 183 23 chr21 27154308 27154701 -7752869 - L2 LINE L2 -1 3312 2857 639 225 16 0 chr21 27154877 27155006 -7752564 + FLAM_A SINE Alu 1 131 -2 747 168 53 26 chr21 27155207 27155397 -7752173 + MER20 DNA MER1_type 1 195 -24 866 131 8 0 chr21 27155870 27155992 -7751578 + FLAM_C SINE Alu 1 123 -20 1973 144 26 49 chr21 27156087 27156477 -7751093 + MLT1B LTR MaLR 7 387 -3 1674 216 78 47 chr21 27156630 27157120 -7750450 - MLT1D LTR MaLR 0 505 1 564 284 7 0 chr21 27158307 27158455 -7749115 + MER106B DNA MER1_type 5 153 -906 337 147 15 15 chr21 27158934 27159002 -7748568 - MLT1D LTR MaLR 0 505 438 1898 186 58 68 chr21 27159011 27159081 -7748489 - MER34B LTR ERV1 -2 540 471 1330 184 122 49 chr21 27159081 27159450 -7748120 + MSTD LTR MaLR 1 396 0 1898 186 58 68 chr21 27159450 27159940 -7747630 - MER34B LTR ERV1 -71 471 14 1500 202 77 53 chr21 27161200 27161587 -7745983 + MLT1C LTR MaLR 1 402 -65 1952 161 3 16 chr21 27161587 27161903 -7745667 - AluJb SINE Alu 0 312 1 1500 202 77 53 chr21 27161903 27161971 -7745599 + MLT1C LTR MaLR 402 467 0 2090 116 26 22 chr21 27162042 27162353 -7745217 - AluSx SINE Alu 0 312 1 754 239 33 0 chr21 27162923 27163103 -7744467 - MER5A DNA MER1_type 0 189 4 616 124 0 102 chr21 27163493 27163534 -7744036 + MLT1D LTR MaLR 1 45 -345 2199 123 3 3 chr21 27163534 27163835 -7743735 + AluSx SINE Alu 1 301 -11 616 124 0 102 chr21 27163835 27163930 -7743640 + MLT1D LTR MaLR 45 123 -267 2130 116 14 0 chr21 27163970 27164263 -7743307 - AluSx SINE Alu -15 297 1 1115 231 64 44 chr21 27164290 27164650 -7742920 + MLT1D LTR MaLR 139 505 0 611 232 38 43 chr21 27164753 27164964 -7742606 - L1ME2 LINE L1 -47 6117 5908 873 218 63 32 chr21 27164990 27165275 -7742295 - L1ME2 LINE L1 -367 5797 5504 259 117 67 0 chr21 27165766 27165826 -7741744 + (TCTCTG)n Simple_repeat Simple_repeat 2 65 0 212 291 94 51 chr21 27166394 27166511 -7741059 - MIR SINE MIR -62 146 25 246 116 0 0 chr21 27166875 27166918 -7740652 + (CA)n Simple_repeat Simple_repeat 1 43 0 315 306 42 28 chr21 27166926 27167070 -7740500 - MIR SINE MIR -61 201 56 398 319 89 0 chr21 27167347 27167504 -7740066 - MER91A DNA MER1_type -25 171 1 241 255 14 0 chr21 27167714 27167855 -7739715 + CT-rich Low_complexity Low_complexity 2 144 0 1844 182 51 14 chr21 27168398 27168750 -7738820 - MLT1A1 LTR MaLR 0 365 1 748 225 59 43 chr21 27169105 27169358 -7738212 + Charlie4a DNA MER1_type 234 490 -18 2371 103 10 0 chr21 27169717 27170027 -7737543 + AluSp SINE Alu 1 313 0 678 259 10 35 chr21 27170266 27170329 -7737241 - MIR SINE MIR -21 241 178 2271 127 21 26 chr21 27170329 27170706 -7736864 + THE1C LTR MaLR 1 375 0 678 259 10 35 chr21 27170706 27170839 -7736731 - MIR SINE MIR -84 178 50 1956 120 77 40 chr21 27170960 27171311 -7736259 + THE1B LTR MaLR 1 364 0 448 243 167 24 chr21 27171890 27172100 -7735470 - L1ME1 LINE L1 -18 6148 5909 1586 208 0 10 chr21 27172935 27173238 -7734332 + AluJb SINE Alu 9 308 -4 419 148 46 74 chr21 27173293 27173401 -7734169 + MLT1D LTR MaLR 3 107 -398 32 0 0 0 chr21 27173896 27173928 -7733642 + AT_rich Low_complexity Low_complexity 1 32 0 764 218 40 45 chr21 27174065 27174267 -7733303 + MER20 DNA MER1_type 2 202 -17 2274 96 3 0 chr21 27174698 27175003 -7732567 + AluSx SINE Alu 1 306 0 195 162 0 0 chr21 27176004 27176041 -7731529 + GA-rich Low_complexity Low_complexity 2 38 0 240 250 167 15 chr21 27176041 27176173 -7731397 + MIR3 SINE MIR 21 172 -36 289 304 109 30 chr21 27176524 27176754 -7730816 - MLT1J LTR MaLR -2 509 262 444 218 10 10 chr21 27176782 27176883 -7730687 - MLT1J LTR MaLR -342 169 69 829 175 48 0 chr21 27177313 27177479 -7730091 - MER20 DNA MER1_type -26 193 20 384 274 103 0 chr21 27177835 27177952 -7729618 + L2 LINE L2 3144 3272 0 860 255 20 44 chr21 27178045 27178296 -7729274 - MIR SINE MIR -16 246 2 508 276 173 5 chr21 27178598 27178812 -7728758 + MLT1K LTR MaLR 332 581 -7 2477 86 77 3 chr21 27179688 27180037 -7727533 + THE1C LTR MaLR 1 375 0 2109 182 75 15 chr21 27181591 27182070 -7725500 - L1MB5 LINE L1 -27 6147 5640 272 302 103 0 chr21 27182084 27182200 -7725370 - MIR3 SINE MIR -70 138 11 2198 125 0 3 chr21 27182856 27183161 -7724409 + AluSx SINE Alu 1 304 -8 282 265 27 95 chr21 27183806 27183953 -7723617 - MIR SINE MIR -73 189 53 2215 180 54 5 chr21 27184500 27184944 -7722626 + L1MB3 LINE L1 5715 6180 -3 239 250 17 17 chr21 27185025 27185085 -7722485 + MER5B DNA MER1_type 75 134 -44 774 189 51 34 chr21 27185284 27185459 -7722111 + MER45A DNA AcHobo 1 178 0 468 356 36 13 chr21 27185924 27186149 -7721421 - MIR SINE MIR -7 255 26 420 309 6 49 chr21 27187089 27187251 -7720319 - L2 LINE L2 0 3313 3159 255 267 92 51 chr21 27187429 27187624 -7719946 - L2 LINE L2 -425 2889 2687 189 0 0 0 chr21 27188553 27188574 -7718996 + (CAGAA)n Simple_repeat Simple_repeat 5 25 0 1314 196 106 42 chr21 27188733 27189167 -7718403 + MLT1C LTR MaLR 6 467 0 426 218 129 0 chr21 27189167 27189290 -7718280 + MLT1E2 LTR MaLR 444 582 -44 1839 204 37 35 chr21 27190771 27190820 -7716750 - MLT1D LTR MaLR -2 503 456 2496 80 0 0 chr21 27190820 27191122 -7716448 + AluSg SINE Alu 1 302 -8 1839 204 37 35 chr21 27191122 27191529 -7716041 - MLT1D LTR MaLR -49 456 46 461 353 68 7 chr21 27191770 27192212 -7715358 + L2 LINE L2 2506 2974 -340 2167 163 49 51 chr21 27192317 27192699 -7714871 + MLT1C LTR MaLR 18 399 -68 243 0 0 0 chr21 27192699 27192726 -7714844 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2104 101 4 11 chr21 27192734 27193011 -7714559 - AluSc SINE Alu -32 277 3 2167 163 49 51 chr21 27193011 27193068 -7714502 + MLT1C LTR MaLR 406 465 -2 288 0 0 0 chr21 27193357 27193389 -7714181 + (TG)n Simple_repeat Simple_repeat 2 33 0 789 113 8 65 chr21 27193389 27193513 -7714057 - FLAM_C SINE Alu -16 117 1 2478 73 0 0 chr21 27193521 27193809 -7713761 - AluSc SINE Alu -21 288 1 216 0 0 0 chr21 27194531 27194555 -7713015 + (A)n Simple_repeat Simple_repeat 1 24 0 3610 112 68 31 chr21 27194623 27195210 -7712360 + MER4B LTR ERV1 1 609 -1 772 198 84 0 chr21 27195396 27195563 -7712007 + MER58A DNA MER1_type 43 223 -1 593 270 80 31 chr21 27195717 27196006 -7711564 + MLT1I LTR MaLR 101 403 -6 21 0 0 0 chr21 27196069 27196090 -7711480 + GC_rich Low_complexity Low_complexity 1 21 0 741 267 5 11 chr21 27196301 27196488 -7711082 - MIR SINE MIR -31 231 46 2768 98 30 41 chr21 27196838 27196882 -7710688 + MER57B LTR ERV1 1 44 -390 2349 109 3 3 chr21 27196882 27197194 -7710376 - AluSx SINE Alu 0 312 1 2768 98 30 41 chr21 27197194 27197588 -7709982 + MER57B LTR ERV1 44 434 0 221 0 35 0 chr21 27200396 27200425 -7707145 + (GGAA)n Simple_repeat Simple_repeat 2 31 0 940 187 25 0 chr21 27200866 27201064 -7706506 - L1MCb LINE L1 -4935 1110 908 966 210 77 13 chr21 27201063 27201296 -7706274 - L1MCb LINE L1 -6167 397 150 2921 16 0 0 chr21 27201874 27202191 -7705379 + AluYb8 SINE Alu 1 317 -1 1945 172 0 3 chr21 27202202 27202515 -7705055 + AluJo SINE Alu 1 312 0 273 119 0 0 chr21 27203476 27203518 -7704052 + (TC)n Simple_repeat Simple_repeat 1 42 0 350 308 28 19 chr21 27204205 27204312 -7703258 - MIR3 SINE MIR 0 208 101 181 195 49 0 chr21 27205478 27205519 -7702051 + MER5B DNA MER1_type 133 175 -3 193 309 106 49 chr21 27206293 27206416 -7701154 - L2 LINE L2 -222 3050 2921 1457 107 11 19 chr21 27207459 27207702 -7699868 - L1PA5 LINE L1 -232 5922 5680 269 233 167 11 chr21 27207802 27207892 -7699678 - MER5A DNA MER1_type -32 157 54 3582 143 11 4 chr21 27207894 27208455 -7699115 - L1PA16 LINE L1 -9 6157 5593 1149 95 35 0 chr21 27208472 27208641 -7698929 - L1MA2 LINE L1 0 6304 6130 978 133 100 2 chr21 27208646 27208679 -7698891 - L1MC/D LINE L1 -574 5592 5564 877 75 38 23 chr21 27208679 27208812 -7698758 - L1PA13 LINE L1 -1 6162 6028 978 133 100 2 chr21 27208812 27208969 -7698601 - L1MC/D LINE L1 -602 5564 5420 1134 83 7 0 chr21 27211572 27211716 -7695854 - AluSc SINE Alu -12 297 153 266 279 63 19 chr21 27212006 27212098 -7695472 + MER3 DNA MER1_type 45 148 -61 2052 104 0 43 chr21 27212098 27212397 -7695173 - AluSx SINE Alu -25 287 2 266 279 63 19 chr21 27212397 27212462 -7695108 + MER3 DNA MER1_type 148 209 0 644 168 25 68 chr21 27212744 27212905 -7694665 + MLT1C LTR MaLR 8 161 -306 4401 107 14 0 chr21 27212908 27213527 -7694043 - L1PA13 LINE L1 -13 6150 5523 435 213 83 0 chr21 27213729 27213837 -7693733 + Charlie4 DNA MER1_type 1 117 -1844 1463 241 50 46 chr21 27213846 27214345 -7693225 + Charlie4a DNA MER1_type 8 508 0 1298 197 19 93 chr21 27216998 27217419 -7690151 - MLT1B LTR MaLR 0 390 1 879 148 97 23 chr21 27217705 27217881 -7689689 + MER53 DNA DNA 1 189 0 4311 181 45 5 chr21 27218035 27218910 -7688660 - MER49 LTR ERV1 -9 914 5 210 292 0 0 chr21 27219415 27219463 -7688107 + (CGTG)n Simple_repeat Simple_repeat 4 51 0 1377 197 118 22 chr21 27220687 27221043 -7686527 + MLT1B LTR MaLR 1 390 0 202 148 25 66 chr21 27224009 27224131 -7683439 + (TCTCTG)n Simple_repeat Simple_repeat 4 120 0 465 97 32 81 chr21 27224154 27224340 -7683230 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 2099 150 34 8 chr21 27224874 27225254 -7682316 - MLT1B LTR MaLR 0 390 1 275 333 85 7 chr21 27225712 27225853 -7681717 - L2 LINE L2 -1224 2090 1939 182 171 24 0 chr21 27226085 27226126 -7681444 + (TG)n Simple_repeat Simple_repeat 1 42 0 23 33 0 0 chr21 27226225 27226255 -7681315 + AT_rich Low_complexity Low_complexity 1 30 0 605 187 29 43 chr21 27226377 27226516 -7681054 - L1MC1 LINE L1 0 6333 6197 731 216 0 0 chr21 27227096 27227249 -7680321 + L1MB3 LINE L1 5318 5470 -710 6467 77 12 0 chr21 27227292 27228410 -7679160 - L1PA14 LINE L1 -9 6152 5057 3599 176 38 4 chr21 27228428 27229106 -7678464 + L1MB3 LINE L1 5476 6176 -7 653 225 44 0 chr21 27230361 27230521 -7677049 - MER5A DNA MER1_type 0 189 23 658 158 67 0 chr21 27231071 27231191 -7676379 + AluJo SINE Alu 121 248 -64 208 135 0 0 chr21 27231209 27231246 -7676324 + (A)n Simple_repeat Simple_repeat 1 37 0 836 210 78 19 chr21 27231544 27231962 -7675608 + MLT1E2 LTR MaLR 24 505 0 311 241 114 14 chr21 27234111 27234255 -7673315 - MIR SINE MIR -63 145 30 252 268 0 0 chr21 27234536 27234607 -7672963 + G-rich Low_complexity Low_complexity 1 71 0 1310 203 128 35 chr21 27234698 27235121 -7672449 - MLT1C LTR MaLR 0 467 6 881 186 99 0 chr21 27237053 27237225 -7670345 + MER5A DNA MER1_type 1 189 0 204 203 186 0 chr21 27237465 27237524 -7670046 - MIR SINE MIR -23 239 170 610 232 9 0 chr21 27237584 27237696 -7669874 - MIR SINE MIR -62 146 34 214 307 44 51 chr21 27240716 27240853 -7666717 - L2 LINE L2 -616 2698 2563 1047 290 55 34 chr21 27240909 27241440 -7666130 - MLT2B3 LTR ERVL -8 546 5 276 248 0 0 chr21 27242142 27242275 -7665295 + (CA)n Simple_repeat Simple_repeat 1 133 0 219 283 0 0 chr21 27242319 27242418 -7665152 + (CA)n Simple_repeat Simple_repeat 2 100 0 405 225 11 6 chr21 27242476 27242654 -7664916 + (CA)n Simple_repeat Simple_repeat 1 179 0 196 169 17 17 chr21 27242684 27242743 -7664827 + (CA)n Simple_repeat Simple_repeat 1 59 0 2199 123 48 31 chr21 27243048 27243225 -7664345 - THE1B LTR MaLR 0 364 191 2331 92 0 28 chr21 27243225 27243542 -7664028 - AluY SINE Alu -3 308 1 2199 123 48 31 chr21 27243542 27243722 -7663848 - THE1B LTR MaLR -173 191 1 2427 96 0 0 chr21 27245093 27245396 -7662174 + AluSg SINE Alu 1 303 -7 2261 94 3 0 chr21 27245916 27246202 -7661368 + AluSg1 SINE Alu 6 292 -17 1255 245 23 29 chr21 27246266 27246415 -7661155 - MER58B DNA MER1_type -2079 341 193 2287 148 9 92 chr21 27246415 27246880 -7660690 - MSTC LTR MaLR 0 428 3 1255 245 23 29 chr21 27246880 27247073 -7660497 - MER58B DNA MER1_type -2227 193 1 2040 152 0 13 chr21 27247911 27248227 -7659343 + AluSx SINE Alu 1 312 0 2002 153 0 10 chr21 27248652 27248953 -7658617 + AluJo SINE Alu 1 298 -14 594 291 142 24 chr21 27249666 27249962 -7657608 + L1ME4a LINE L1 5790 6120 -1 554 160 0 10 chr21 27253272 27253372 -7654198 - MLT1C LTR MaLR -9 458 360 385 186 16 73 chr21 27253498 27253622 -7653948 - MLT1C LTR MaLR -192 198 82 775 211 91 22 chr21 27253623 27253855 -7653715 - MLT1C LTR MaLR -219 248 1 62 36 0 0 chr21 27254196 27254279 -7653291 + AT_rich Low_complexity Low_complexity 1 83 0 2087 108 0 18 chr21 27254354 27254677 -7652893 - AluSx SINE Alu 0 318 1 2317 157 19 24 chr21 27254766 27255187 -7652383 - MSTB LTR MaLR 0 426 8 210 318 83 15 chr21 27255665 27255797 -7651773 - L2 LINE L2 -65 3248 3108 1987 138 11 0 chr21 27256109 27256392 -7651178 - AluSx SINE Alu -17 295 10 693 230 11 6 chr21 27256712 27256890 -7650680 - MER53 DNA DNA 0 189 11 355 235 123 53 chr21 27256984 27257154 -7650416 - MIR SINE MIR 0 262 81 579 212 217 18 chr21 27257162 27257379 -7650191 - MIR SINE MIR 0 262 3 1270 180 5 5 chr21 27257703 27257914 -7649656 + AluJo SINE Alu 85 295 -17 366 294 40 24 chr21 27257950 27258076 -7649494 - MIR SINE MIR -111 151 24 22 35 0 0 chr21 27259292 27259321 -7648249 + AT_rich Low_complexity Low_complexity 1 29 0 1609 186 54 63 chr21 27260203 27260644 -7646926 + L1MB7 LINE L1 5728 6164 -20 1689 160 0 0 chr21 27260645 27260908 -7646662 - AluJo SINE Alu -15 297 35 348 264 95 70 chr21 27260955 27261228 -7646342 + L2 LINE L2 2695 2974 -340 424 248 53 9 chr21 27261413 27261526 -7646044 + L2 LINE L2 3136 3253 -19 2398 103 0 0 chr21 27261569 27261881 -7645689 + AluSx SINE Alu 1 312 0 236 251 60 60 chr21 27262191 27262358 -7645212 - L1ME LINE L1 -685 5436 5270 316 220 73 18 chr21 27263075 27263184 -7644386 + L1MC/D LINE L1 5682 5796 -2012 198 0 0 0 chr21 27264116 27264138 -7643432 + (A)n Simple_repeat Simple_repeat 1 22 0 473 306 78 24 chr21 27264549 27264755 -7642815 + MIR SINE MIR 46 262 0 200 200 0 0 chr21 27264775 27264815 -7642755 + (CAT)n Simple_repeat Simple_repeat 3 42 0 830 267 123 27 chr21 27265048 27265422 -7642148 + L2 LINE L2 2231 2640 -674 202 308 62 39 chr21 27265595 27265725 -7641845 + L2 LINE L2 2927 3059 -254 1422 203 91 37 chr21 27265730 27266159 -7641411 + MLT1C LTR MaLR 6 457 -10 735 126 0 0 chr21 27266694 27266797 -7640773 + AluSg/x SINE Alu 198 300 -9 331 214 9 80 chr21 27267987 27268099 -7639471 - L1MD3 LINE L1 -1 7994 7891 534 163 106 85 chr21 27268127 27268268 -7639302 + MER44D DNA MER2_type 1 414 -195 1219 179 5 5 chr21 27268268 27268492 -7639078 + MER44D DNA MER2_type 375 598 -7 458 337 55 0 chr21 27269476 27269678 -7637892 - L1MC4a LINE L1 -1885 5923 5711 2038 202 50 39 chr21 27270455 27270970 -7636600 + Charlie1b DNA MER1_type 3 523 0 353 343 76 19 chr21 27271598 27271882 -7635688 - L1MC4a LINE L1 -780 5462 5259 864 239 43 81 chr21 27272254 27272626 -7634944 + MLT2D LTR ERVL 1 358 -56 309 89 0 0 chr21 27272666 27272711 -7634859 + (CA)n Simple_repeat Simple_repeat 2 46 0 210 160 0 0 chr21 27273561 27273611 -7633959 + (TA)n Simple_repeat Simple_repeat 1 50 0 471 153 13 10 chr21 27273618 27273720 -7633850 + L1MB1 LINE L1 5760 5862 -304 261 0 0 0 chr21 27273777 27273806 -7633764 + (TA)n Simple_repeat Simple_repeat 1 29 0 372 154 0 0 chr21 27273809 27273874 -7633696 - L1M2 LINE L1 -516 5775 5711 400 284 54 20 chr21 27273899 27274047 -7633523 - MLT1A2 LTR MaLR -221 153 1 312 286 5 5 chr21 27274328 27274441 -7633129 - L1MC4a LINE L1 -891 5255 5143 2026 118 0 0 chr21 27274839 27275110 -7632460 - AluSg SINE Alu -6 304 34 2683 158 42 6 chr21 27275574 27276073 -7631497 - L1MB3 LINE L1 -2 6181 5665 360 0 0 0 chr21 27276517 27276557 -7631013 + (TG)n Simple_repeat Simple_repeat 2 41 0 1149 123 33 3 chr21 27277044 27277358 -7630212 - THE1B LTR MaLR 0 364 1 671 156 11 78 chr21 27277931 27278111 -7629459 - MER53 DNA DNA -1 188 21 4271 164 20 54 chr21 27278112 27278750 -7628820 - L1MB8 LINE L1 -9 6169 5511 2010 73 92 4 chr21 27278750 27279011 -7628559 + AluY SINE Alu 1 284 -27 4271 164 20 54 chr21 27279011 27279026 -7628544 - L1MB8 LINE L1 -667 5511 5497 297 0 0 0 chr21 27279026 27279059 -7628511 + (CA)n Simple_repeat Simple_repeat 2 34 0 4271 164 20 54 chr21 27279059 27279240 -7628330 - L1MB8 LINE L1 -681 5497 5311 2212 131 0 6 chr21 27279240 27279554 -7628016 - AluSx SINE Alu 0 312 1 4271 164 20 54 chr21 27279554 27279798 -7627772 - L1MB8 LINE L1 -867 5311 5124 1959 124 36 0 chr21 27279798 27280110 -7627460 - AluSx SINE Alu 0 322 1 4271 164 20 54 chr21 27280110 27280322 -7627248 - L1MB8 LINE L1 -1054 5124 4906 289 221 37 12 chr21 27281653 27281816 -7625754 + (TA)n Simple_repeat Simple_repeat 1 167 0 357 240 14 63 chr21 27281831 27281953 -7625617 - L1MCa LINE L1 -1339 6983 1966 366 217 132 0 chr21 27281987 27282070 -7625500 - L1MC4 LINE L1 -1339 6703 6610 257 258 50 0 chr21 27282070 27282190 -7625380 + (TA)n Simple_repeat Simple_repeat 1 126 0 1741 185 3 26 chr21 27282200 27282552 -7625018 - MLT2C1 LTR ERVL -48 349 6 1094 212 37 5 chr21 27283343 27283560 -7624010 + MER58A DNA MER1_type 1 224 0 1300 171 32 16 chr21 27286887 27287139 -7620431 - MLT1D LTR MaLR 0 505 250 2392 92 3 3 chr21 27287341 27287644 -7619926 + AluSx SINE Alu 1 303 -9 364 239 33 33 chr21 27287676 27287768 -7619802 - L2 LINE L2 -1 3312 3221 632 126 68 0 chr21 27287769 27287872 -7619698 + LTR40b LTR ERVL 353 462 0 1003 261 63 45 chr21 27288167 27288310 -7619260 + MLT1J2 LTR MaLR 41 180 -270 2422 52 14 7 chr21 27288310 27288601 -7618969 + AluSp SINE Alu 1 293 -20 1003 261 63 45 chr21 27288601 27288856 -7618714 + MLT1J2 LTR MaLR 180 446 -4 22 70 0 0 chr21 27289074 27289117 -7618453 + AT_rich Low_complexity Low_complexity 1 43 0 402 315 30 25 chr21 27289699 27289868 -7617702 - MIR3 SINE MIR -62 146 15 351 150 0 0 chr21 27290014 27290074 -7617496 + (CA)n Simple_repeat Simple_repeat 2 61 0 426 121 0 0 chr21 27290159 27290225 -7617345 + (CA)n Simple_repeat Simple_repeat 2 67 0 1435 189 4 8 chr21 27293275 27293529 -7614041 + AluJo SINE Alu 11 263 -49 21 0 0 0 chr21 27293560 27293581 -7613989 + AT_rich Low_complexity Low_complexity 1 21 0 1340 199 89 4 chr21 27293596 27293877 -7613693 + AluJo SINE Alu 2 306 -6 624 266 34 21 chr21 27293889 27294209 -7613361 + MLT1H1 LTR MaLR 124 476 -79 1518 265 72 48 chr21 27294210 27294541 -7613029 + L1MC5 LINE L1 6572 6893 -1068 2136 143 0 0 chr21 27294541 27294835 -7612735 + AluSx SINE Alu 1 294 -18 1518 265 72 48 chr21 27294835 27295309 -7612261 + L1MC5 LINE L1 6893 7396 -565 748 229 49 63 chr21 27295378 27295788 -7611782 + L1MC5 LINE L1 7522 7925 -36 352 274 39 10 chr21 27295790 27295892 -7611678 + L1ME4a LINE L1 5822 5926 -195 412 178 59 20 chr21 27297610 27297711 -7609859 - MER5A DNA MER1_type -76 113 9 13459 76 8 1 chr21 27297831 27300378 -7607192 + L1PA7 LINE L1 3584 6141 -13 2110 72 25 0 chr21 27300526 27300805 -7606765 - L1PA8 LINE L1 -7 6165 5880 1520 196 122 30 chr21 27301872 27302300 -7605270 + MLT1C LTR MaLR 1 467 0 765 111 4 177 chr21 27302446 27302672 -7604898 + MER53 DNA DNA 2 188 -1 850 224 18 0 chr21 27303041 27303206 -7604364 + MER45A DNA AcHobo 9 176 -2 327 319 80 0 chr21 27304046 27304159 -7603411 + MIR3 SINE MIR 42 163 -45 8847 59 5 0 chr21 27304496 27305562 -7602008 - MER11C LTR ERVK 0 1071 1 296 308 84 9 chr21 27305968 27306075 -7601495 - MER91C DNA MER1_type 0 140 26 3128 166 9 18 chr21 27306695 27307249 -7600321 - L1MB5 LINE L1 0 6174 5626 1072 181 39 0 chr21 27307315 27307520 -7600050 - MER58A DNA MER1_type -9 215 3 323 247 13 26 chr21 27307890 27307967 -7599603 - L2 LINE L2 -2 3270 3195 323 239 0 14 chr21 27307996 27308067 -7599503 - L3 LINE CR1 -116 1461 1392 180 77 0 0 chr21 27308193 27308219 -7599351 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1732 172 0 26 chr21 27308408 27308721 -7598849 + AluJo SINE Alu 1 305 -7 446 310 32 11 chr21 27308750 27308937 -7598633 + MIR SINE MIR 2 192 -70 226 295 135 13 chr21 27309309 27309465 -7598105 - MER112 DNA MER1_type -21 239 65 776 188 0 0 chr21 27309565 27309698 -7597872 + FLAM_C SINE Alu 1 133 0 358 234 39 47 chr21 27309725 27309910 -7597660 - L1MC4 LINE L1 -1339 6983 1977 24 32 0 0 chr21 27310501 27310532 -7597038 + AT_rich Low_complexity Low_complexity 1 31 0 2390 106 0 0 chr21 27310897 27311199 -7596371 + AluSc SINE Alu 1 302 -7 735 173 0 0 chr21 27311199 27311338 -7596232 + GA-rich Low_complexity Low_complexity 1 139 0 1438 226 76 21 chr21 27311416 27311850 -7595720 + Charlie4a DNA MER1_type 20 477 -31 292 299 43 60 chr21 27312157 27312274 -7595296 - MIR SINE MIR -64 144 30 181 273 0 23 chr21 27313961 27314005 -7593565 + MER5A DNA MER1_type 33 75 -114 2465 54 0 0 chr21 27314010 27314290 -7593280 + AluY SINE Alu 23 302 -9 208 268 246 22 chr21 27314376 27314514 -7593056 + MER5B DNA MER1_type 3 185 -4 674 162 51 0 chr21 27314525 27314642 -7592928 + MER5A DNA MER1_type 2 124 -65 249 302 44 110 chr21 27315231 27315549 -7592021 + L2 LINE L2 2965 3261 -11 2353 100 0 3 chr21 27315796 27316097 -7591473 + AluSx SINE Alu 1 300 -12 294 309 108 7 chr21 27316672 27316811 -7590759 - MIR SINE MIR -97 165 13 348 213 107 107 chr21 27317774 27317872 -7589698 + MLT1C LTR MaLR 1 98 -292 3439 95 42 6 chr21 27317872 27318368 -7589202 + MER75 DNA T2_type 1 514 0 348 213 107 107 chr21 27318368 27318494 -7589076 + MLT1C LTR MaLR 97 225 -165 398 244 78 0 chr21 27318551 27318664 -7588906 + MLT1C LTR MaLR 298 419 -48 2501 125 35 0 chr21 27318664 27319070 -7588500 - MER1A DNA MER1_type 0 529 70 1594 126 19 0 chr21 27319171 27319433 -7588137 + MLT1B LTR MaLR 124 390 0 1470 161 109 11 chr21 27319494 27319761 -7587809 + AluJo SINE Alu 1 293 -19 435 284 16 24 chr21 27319771 27319898 -7587672 - MIR SINE MIR -104 158 33 1983 80 0 4 chr21 27320420 27320669 -7586901 + AluSq SINE Alu 1 248 -65 185 302 128 47 chr21 27320831 27320917 -7586653 - MIR3 SINE MIR -110 98 6 2424 97 0 0 chr21 27321406 27321717 -7585853 + AluY SINE Alu 1 311 0 1820 153 9 50 chr21 27321983 27322303 -7585267 + AluJo SINE Alu 6 312 0 1789 79 9 149 chr21 27322318 27322647 -7584923 + AluSx SINE Alu 7 289 -23 1038 229 78 57 chr21 27322663 27323099 -7584471 - Charlie4a DNA MER1_type -42 466 22 586 229 62 0 chr21 27329157 27329301 -7578269 - L2 LINE L2 0 3313 3161 2523 128 141 0 chr21 27329301 27329740 -7577830 + Charlie3 DNA MER1_type 1 501 -2209 3182 94 20 4 chr21 27329734 27330191 -7577379 + Charlie3 DNA MER1_type 2243 2706 -4 411 308 72 47 chr21 27330214 27330493 -7577077 - L2 LINE L2 -196 3117 2832 446 274 117 48 chr21 27330552 27331026 -7576544 - L1ME LINE L1 -4814 1315 805 318 295 99 11 chr21 27331457 27331608 -7575962 - L1ME LINE L1 -5868 251 93 387 0 0 0 chr21 27331674 27331717 -7575853 + (CA)n Simple_repeat Simple_repeat 2 44 0 3026 181 67 59 chr21 27331725 27331961 -7575609 + LTR48 LTR ERV1 1 234 -553 2164 120 17 0 chr21 27331961 27332253 -7575317 + AluSx SINE Alu 1 297 -15 3026 181 67 59 chr21 27332253 27332797 -7574773 + LTR48 LTR ERV1 234 787 0 608 201 32 39 chr21 27333008 27333162 -7574408 - L2 LINE L2 -746 2568 2416 223 61 0 30 chr21 27333529 27333562 -7574008 + (GGAGAA)n Simple_repeat Simple_repeat 6 37 0 964 136 6 11 chr21 27333572 27333593 -7573977 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 964 136 6 11 chr21 27333593 27333770 -7573800 + (GAAA)n Simple_repeat Simple_repeat 2 177 0 453 243 7 56 chr21 27334017 27334161 -7573409 + MER103 DNA DNA 17 153 -13 695 243 32 0 chr21 27334238 27334423 -7573147 + MER58B DNA MER1_type 5 195 -146 1108 204 71 36 chr21 27334424 27334704 -7572866 - MLT1A2 LTR MaLR -1 373 84 936 141 0 7 chr21 27334748 27334897 -7572673 + MER58B DNA MER1_type 194 341 0 1236 269 77 71 chr21 27335522 27336116 -7571454 - MER115 DNA AcHobo 0 693 96 389 255 163 25 chr21 27338305 27338544 -7569026 + MLT1J2 LTR MaLR 40 311 -139 232 127 48 95 chr21 27339010 27339073 -7568497 + MLT1L LTR MaLR 345 404 -211 239 188 246 0 chr21 27339238 27339307 -7568263 - MLT1B LTR MaLR -12 378 293 338 284 0 20 chr21 27339305 27339407 -7568163 + MLT1I LTR MaLR 83 182 -227 291 279 0 0 chr21 27339648 27339727 -7567843 + MLT1L LTR MaLR 537 615 0 399 284 11 0 chr21 27339728 27339823 -7567747 - MIR SINE MIR -111 151 56 183 310 78 35 chr21 27339875 27340017 -7567553 + MER5B DNA MER1_type 31 178 0 248 209 85 54 chr21 27340838 27340967 -7566603 + L1M4 LINE L1 4396 4528 -1618 1407 188 79 0 chr21 27341116 27341252 -7566318 + L1MA10 LINE L1 6017 6141 -193 201 74 0 0 chr21 27341252 27341279 -7566291 + (CA)n Simple_repeat Simple_repeat 2 28 0 1407 188 79 0 chr21 27341279 27341434 -7566136 + L1MA10 LINE L1 6141 6331 -3 22 0 0 0 chr21 27342136 27342158 -7565412 + AT_rich Low_complexity Low_complexity 1 22 0 600 195 88 0 chr21 27342571 27342684 -7564886 + MER63 DNA MER1_type 1 749 -313 2006 130 3 0 chr21 27343226 27343525 -7564045 - AluSx SINE Alu -12 300 1 344 246 110 52 chr21 27343628 27343784 -7563786 - MIR SINE MIR -57 205 37 2084 162 52 38 chr21 27345848 27346248 -7561322 + MLT2D LTR ERVL 1 406 -8 289 336 32 24 chr21 27346268 27346393 -7561177 + L2 LINE L2 3142 3267 -5 2489 149 26 5 chr21 27347591 27348006 -7559564 - MSTA LTR MaLR 0 428 5 2306 78 0 0 chr21 27348911 27349206 -7558364 + AluSx SINE Alu 5 299 -13 1412 212 52 42 chr21 27349539 27349925 -7557645 - MLT1C LTR MaLR 0 467 78 15803 171 35 8 chr21 27350330 27352318 -7555252 + L1M2 LINE L1 6 2146 -4702 2021 110 0 17 chr21 27352318 27352610 -7554960 + AluSg1 SINE Alu 1 287 -22 15803 171 35 8 chr21 27352610 27353739 -7553831 + L1M2 LINE L1 2146 3243 -3605 201 121 0 0 chr21 27354571 27354604 -7552966 + (TG)n Simple_repeat Simple_repeat 1 33 0 256 193 37 28 chr21 27354808 27354917 -7552653 + (TA)n Simple_repeat Simple_repeat 2 111 0 285 212 22 22 chr21 27355178 27355315 -7552255 + (CA)n Simple_repeat Simple_repeat 2 138 0 336 179 30 15 chr21 27355334 27355468 -7552102 + (CA)n Simple_repeat Simple_repeat 1 136 0 254 266 62 35 chr21 27355868 27355981 -7551589 + L1MC1 LINE L1 5542 5657 -2151 920 238 29 0 chr21 27356178 27356384 -7551186 + MER20 DNA MER1_type 1 212 -7 188 35 35 0 chr21 27356983 27357012 -7550558 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 5350 162 23 4 chr21 27358096 27359373 -7548197 - L1MB3 LINE L1 -2 6181 4882 313 289 118 7 chr21 27360188 27360323 -7547247 - L1M LINE L1 -2405 5403 5254 945 225 109 72 chr21 27360734 27361266 -7546304 - MLT1E LTR MaLR 0 593 13 189 0 0 0 chr21 27362196 27362217 -7545353 + (A)n Simple_repeat Simple_repeat 1 21 0 360 248 0 0 chr21 27363907 27364056 -7543514 + (CA)n Simple_repeat Simple_repeat 2 150 0 229 276 0 17 chr21 27364099 27364280 -7543290 + (CA)n Simple_repeat Simple_repeat 2 179 0 1960 165 61 65 chr21 27364316 27364777 -7542793 - LTR2B LTR ERV1 0 490 32 228 143 0 0 chr21 27364796 27364838 -7542732 + (CA)n Simple_repeat Simple_repeat 2 43 0 393 302 111 49 chr21 27364903 27365271 -7542299 + MLT1L LTR MaLR 133 523 -92 2139 147 12 3 chr21 27365290 27365636 -7541934 + L1MC1 LINE L1 5801 6149 -184 474 165 13 0 chr21 27365633 27365712 -7541858 + L1MC1 LINE L1 6063 6142 -191 1641 131 48 0 chr21 27365715 27365967 -7541603 + L1MC1 LINE L1 6063 6326 -7 243 88 0 0 chr21 27365976 27366010 -7541560 + (TA)n Simple_repeat Simple_repeat 2 35 0 865 150 0 0 chr21 27366555 27366688 -7540882 - FLAM_C SINE Alu 0 133 1 2460 49 3 0 chr21 27368270 27368576 -7538994 + AluY SINE Alu 1 307 -4 1884 118 29 0 chr21 27368686 27368985 -7538585 - AluSx SINE Alu 0 312 5 186 326 0 0 chr21 27369446 27369492 -7538078 - MIR SINE MIR -107 155 110 403 256 60 64 chr21 27370161 27370411 -7537159 + MLT1J1 LTR MaLR 168 431 -19 674 184 113 43 chr21 27370659 27370844 -7536726 + MER3 DNA MER1_type 12 209 0 250 191 0 0 chr21 27371752 27371799 -7535771 - MLT1B LTR MaLR -99 291 245 2036 129 164 13 chr21 27371800 27372172 -7535398 + MSTA LTR MaLR 1 428 0 1363 94 0 11 chr21 27372175 27372366 -7535204 + MSTA-int LTR MaLR 3 191 -1389 2007 121 142 18 chr21 27372366 27372746 -7534824 + MSTA LTR MaLR 1 427 -1 1011 167 80 46 chr21 27372746 27372985 -7534585 - MLT1B LTR MaLR -143 247 1 391 316 51 0 chr21 27373774 27373932 -7533638 + MLT1J2 LTR MaLR 1 166 -284 419 262 74 70 chr21 27373998 27374361 -7533209 + MLT1H LTR MaLR 124 540 -9 581 239 76 61 chr21 27374405 27374602 -7532968 + MLT1J2 LTR MaLR 228 427 -23 422 275 43 80 chr21 27375106 27375392 -7532178 - L2 LINE L2 -247 3066 2791 5924 217 62 31 chr21 27375415 27376407 -7531163 - L1ME1 LINE L1 -5 6161 5201 2031 166 8 3 chr21 27376407 27376762 -7530808 - L1PA16 LINE L1 -6 6160 5804 5924 217 62 31 chr21 27376762 27376863 -7530707 - L1ME1 LINE L1 -965 5201 5105 2054 97 4 0 chr21 27376863 27377184 -7530386 - AluSx SINE Alu 0 326 5 5924 217 62 31 chr21 27377184 27378446 -7529124 - L1ME1 LINE L1 -1061 5105 3715 1763 141 103 29 chr21 27378446 27378786 -7528784 - MLT1A1 LTR MaLR 0 365 1 5924 217 62 31 chr21 27378786 27379078 -7528492 - L1ME1 LINE L1 -2451 3715 3433 2157 89 10 0 chr21 27379082 27379374 -7528196 - AluSg SINE Alu -15 295 1 1849 158 42 24 chr21 27379393 27379729 -7527841 + MLT-int LTR MaLR 1382 1723 -12 2718 219 80 13 chr21 27379729 27380358 -7527212 - MER21B LTR ERV1 -172 691 21 410 238 0 12 chr21 27380382 27380462 -7527108 - MER21B LTR ERV1 -773 90 12 318 323 39 39 chr21 27380538 27380693 -7526877 - L1ME LINE L1 -5909 161 7 185 351 109 24 chr21 27380702 27380867 -7526703 - L2 LINE L2 -540 2774 2596 1246 181 111 59 chr21 27381339 27381710 -7525860 - MLT1B LTR MaLR 0 390 1 1579 176 33 3 chr21 27382077 27382378 -7525192 + AluJb SINE Alu 1 310 -2 326 261 23 0 chr21 27382769 27382857 -7524713 + MER82 DNA MER2_type 3 92 -561 224 390 0 21 chr21 27382944 27383039 -7524531 - MIR SINE MIR -64 144 52 850 230 21 16 chr21 27383096 27383287 -7524283 + MER82 DNA MER2_type 444 635 -18 2381 124 103 0 chr21 27383437 27383824 -7523746 + MSTC LTR MaLR 1 427 -1 2109 138 117 25 chr21 27384093 27384116 -7523454 - MSTA LTR MaLR 0 428 1 1959 138 125 27 chr21 27384116 27384485 -7523085 - MSTA LTR MaLR -23 405 1 1086 156 17 0 chr21 27385840 27386019 -7521551 - AluJo SINE Alu -9 303 122 864 28 0 49 chr21 27386034 27386176 -7521394 + (TCTCCC)n Simple_repeat Simple_repeat 3 137 0 5918 83 38 24 chr21 27386176 27387703 -7519867 + SVA Other Other 72 1386 0 219 69 0 0 chr21 27387900 27387929 -7519641 + (A)n Simple_repeat Simple_repeat 1 29 0 2174 114 0 14 chr21 27387934 27388060 -7519510 + AluSx SINE Alu 11 137 -175 2423 75 3 7 chr21 27388060 27388366 -7519204 + AluSp SINE Alu 1 305 -8 2174 114 0 14 chr21 27388366 27388536 -7519034 + AluSx SINE Alu 137 303 -9 1649 223 109 42 chr21 27390600 27391106 -7516464 + MER34 LTR ERV1 3 542 0 214 259 17 0 chr21 27391963 27392021 -7515549 + CT-rich Low_complexity Low_complexity 1 59 0 1366 169 48 8 chr21 27392057 27392305 -7515265 + AluJo SINE Alu 11 268 -44 21 0 0 0 chr21 27392314 27392335 -7515235 + AT_rich Low_complexity Low_complexity 1 21 0 1066 182 35 130 chr21 27392404 27392748 -7514822 - MLT1A1 LTR MaLR -40 356 3 514 253 30 6 chr21 27392924 27393090 -7514480 + L2 LINE L2 1913 2082 -1232 649 271 154 0 chr21 27393198 27393438 -7514132 + L2 LINE L2 2244 2520 -794 739 212 151 54 chr21 27393489 27393907 -7513663 + LTR40a LTR ERVL 1 461 -1 273 262 6 125 chr21 27394177 27394337 -7513233 + MLT1-int LTR MaLR 1023 1163 -208 327 289 6 108 chr21 27394614 27394780 -7512790 + MLT1H LTR MaLR 202 350 -199 13132 167 50 19 chr21 27394990 27398778 -7508792 - L1MA4A LINE L1 0 6303 2393 2410 172 28 35 chr21 27398854 27399318 -7508252 + MLT2B3 LTR ERVL 38 498 -56 2403 141 132 7 chr21 27399332 27399771 -7507799 - Tigger3b DNA MER2_type 0 1232 739 1827 182 0 0 chr21 27399956 27400247 -7507323 + AluJb SINE Alu 2 292 -20 849 132 0 52 chr21 27400362 27400498 -7507072 + FLAM_C SINE Alu 6 134 -9 4026 127 78 3 chr21 27401874 27402569 -7505001 - Tigger3b DNA MER2_type -483 748 2 572 190 0 10 chr21 27403054 27403154 -7504416 - FLAM_A SINE Alu -43 99 1 880 189 7 0 chr21 27404661 27404837 -7502733 + FRAM SINE Alu 1 41 0 203 176 33 132 chr21 27405879 27405970 -7501600 - L2 LINE L2 -68 3245 3164 224 273 73 27 chr21 27406103 27406213 -7501357 - L2 LINE L2 -9 3304 3190 22 0 0 0 chr21 27406560 27406582 -7500988 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr21 27406613 27406641 -7500929 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr21 27408157 27408195 -7499375 + AT_rich Low_complexity Low_complexity 1 38 0 2689 140 31 7 chr21 27408383 27408798 -7498772 + MSTB LTR MaLR 1 425 -1 336 243 79 53 chr21 27410024 27410176 -7497394 - MIR3 SINE MIR -14 194 39 1741 163 3 17 chr21 27410646 27410940 -7496630 - AluJo SINE Alu -22 290 1 812 163 0 15 chr21 27410978 27411113 -7496457 + FLAM_C SINE Alu 1 133 0 506 254 45 17 chr21 27411669 27411846 -7495724 + L1MC5 LINE L1 7261 7442 -519 204 135 27 0 chr21 27412799 27412836 -7494734 + CT-rich Low_complexity Low_complexity 2 39 0 765 138 0 0 chr21 27413191 27413307 -7494263 - FLAM_C SINE Alu -17 116 1 243 0 0 0 chr21 27414800 27414827 -7492743 + (A)n Simple_repeat Simple_repeat 1 27 0 209 361 75 23 chr21 27417339 27417472 -7490098 - L2 LINE L2 -155 3117 2978 1495 150 40 0 chr21 27427060 27427307 -7480263 - Tigger3(Golem) DNA MER2_type -2 3027 2771 507 202 10 29 chr21 27427304 27427408 -7480162 - Tigger3(Golem) DNA MER2_type -2887 142 41 415 286 60 32 chr21 27427673 27427858 -7479712 + MIR SINE MIR 70 259 -3 2217 91 0 7 chr21 27429272 27429557 -7478013 - AluSq SINE Alu -30 283 1 2006 125 7 0 chr21 27430208 27430497 -7477073 + AluSx SINE Alu 1 291 -21 1234 209 56 8 chr21 27432690 27432939 -7474631 + AluJo SINE Alu 18 278 -34 222 37 0 0 chr21 27432940 27432967 -7474603 + (T)n Simple_repeat Simple_repeat 1 27 0 2012 47 0 4 chr21 27432976 27433211 -7474359 - AluY SINE Alu -77 234 1 1127 215 20 23 chr21 27433374 27433676 -7473894 + AluSq SINE Alu 1 301 -2 301 227 61 83 chr21 27433700 27433832 -7473738 + L1MEc LINE L1 1948 2076 -4320 1677 161 29 32 chr21 27434142 27434453 -7473117 - MER1B DNA MER1_type -1 338 29 1607 180 10 20 chr21 27434696 27434991 -7472579 + AluJo SINE Alu 1 292 -20 2017 137 7 3 chr21 27434994 27435300 -7472270 + AluSx SINE Alu 1 307 -5 1864 115 67 0 chr21 27435302 27435571 -7471999 + AluSx SINE Alu 1 287 -25 2031 131 27 0 chr21 27436658 27436956 -7470614 + AluSx SINE Alu 2 307 -5 300 27 0 0 chr21 27436956 27436993 -7470577 + (CA)n Simple_repeat Simple_repeat 2 38 0 2487 207 37 16 chr21 27437001 27437567 -7470003 + L1MB4 LINE L1 5486 6063 -117 402 132 0 0 chr21 27437578 27437646 -7469924 + L1MB4 LINE L1 6105 6172 -8 308 162 14 40 chr21 27437649 27437723 -7469847 + L1MB8 LINE L1 6078 6149 -29 1547 117 15 73 chr21 27438080 27438353 -7469217 - AluSx SINE Alu -35 277 21 27 0 0 0 chr21 27438793 27438820 -7468750 + AT_rich Low_complexity Low_complexity 1 27 0 192 77 0 0 chr21 27438941 27438967 -7468603 + (A)n Simple_repeat Simple_repeat 1 26 0 1256 205 117 9 chr21 27440761 27441078 -7466492 + MLT1D LTR MaLR 1 351 -154 351 255 39 0 chr21 27441112 27441214 -7466356 + MLT1D LTR MaLR 521 626 0 672 188 174 0 chr21 27442571 27442709 -7464861 - AluJo SINE Alu -150 162 1 204 40 0 0 chr21 27443418 27443443 -7464127 + (TA)n Simple_repeat Simple_repeat 1 25 0 904 230 111 45 chr21 27443878 27444257 -7463313 + L1MD3 LINE L1 7582 7985 -10 1678 120 83 47 chr21 27444374 27444674 -7462896 - AluSq SINE Alu -1 312 2 1684 167 7 20 chr21 27445229 27445529 -7462041 + AluJb SINE Alu 14 309 -3 22 0 0 0 chr21 27445812 27445834 -7461736 + AT_rich Low_complexity Low_complexity 1 22 0 1444 104 54 0 chr21 27446291 27446513 -7461057 - L1PA13 LINE L1 -3 6160 5927 600 27 0 0 chr21 27446515 27446589 -7460981 + (TA)n Simple_repeat Simple_repeat 2 75 0 2169 112 0 19 chr21 27446589 27446901 -7460669 - AluSx SINE Alu -6 306 1 30 0 0 0 chr21 27448507 27448537 -7459033 + AT_rich Low_complexity Low_complexity 1 30 0 2123 124 3 0 chr21 27448646 27448945 -7458625 + AluSx SINE Alu 4 303 -9 204 310 46 46 chr21 27449529 27449616 -7457954 + MIR SINE MIR 13 99 -163 248 135 0 0 chr21 27449660 27449697 -7457873 - Alu SINE Alu -16 117 81 714 243 74 4 chr21 27449957 27450200 -7457370 + L1MEc LINE L1 683 942 -5454 26 30 0 0 chr21 27450340 27450373 -7457197 + AT_rich Low_complexity Low_complexity 1 33 0 2045 143 10 0 chr21 27450382 27450682 -7456888 + AluSx SINE Alu 3 305 -7 1328 207 120 11 chr21 27451128 27451158 -7456412 + L1M4 LINE L1 5318 5343 -835 1323 159 126 11 chr21 27451158 27451435 -7456135 + AluSg1 SINE Alu 1 309 0 1328 207 120 11 chr21 27451435 27451860 -7455710 + L1M4 LINE L1 5343 5823 -355 835 224 97 22 chr21 27451860 27452646 -7454924 + L1MC4a LINE L1 6692 7602 -206 437 227 165 21 chr21 27452620 27452814 -7454756 + L1MD3 LINE L1 7772 7993 -2 2209 100 7 7 chr21 27453353 27453654 -7453916 - AluSx SINE Alu -11 301 1 24 67 0 0 chr21 27453866 27453911 -7453659 + AT_rich Low_complexity Low_complexity 1 45 0 1468 170 0 98 chr21 27456345 27456680 -7450890 + AluJo SINE Alu 1 302 0 22 0 0 0 chr21 27457111 27457133 -7450437 + AT_rich Low_complexity Low_complexity 1 22 0 2025 118 0 0 chr21 27457512 27457783 -7449787 + AluSg SINE Alu 1 271 -39 301 192 154 23 chr21 27458213 27458343 -7449227 - MER3 DNA MER1_type 0 2502 2356 441 224 0 0 chr21 27458417 27458502 -7449068 - MER3 DNA MER1_type -89 120 36 1589 184 7 24 chr21 27459247 27459541 -7448029 - AluJo SINE Alu -21 291 3 358 289 41 25 chr21 27459649 27459770 -7447800 - L2 LINE L2 -4 3309 3187 2815 198 68 8 chr21 27459900 27460507 -7447063 + MER82 DNA MER2_type 11 653 0 25 0 0 0 chr21 27460685 27460710 -7446860 + AT_rich Low_complexity Low_complexity 1 25 0 363 356 68 63 chr21 27460796 27461178 -7446392 - L1MC4a LINE L1 -1894 5914 5531 233 181 0 149 chr21 27461396 27461490 -7446080 - L1ME LINE L1 -509 5612 5533 1410 224 146 47 chr21 27462392 27462905 -7444665 + MLT1F1 LTR MaLR 4 567 0 2121 113 0 0 chr21 27463242 27463544 -7444026 + AluSx SINE Alu 1 302 0 192 314 0 57 chr21 27463687 27463792 -7443778 - L2 LINE L2 -54 3259 3161 1917 122 25 0 chr21 27464473 27464778 -7442792 + AluSx SINE Alu 1 312 0 932 188 50 5 chr21 27467129 27467331 -7440239 + L1MB2 LINE L1 5957 6167 -4 2489 204 71 16 chr21 27468380 27469268 -7438302 - L1MC/D LINE L1 -756 5390 4544 3296 140 40 21 chr21 27469265 27469842 -7437728 + L1MC1 LINE L1 5503 6090 -243 1085 176 0 0 chr21 27469844 27470014 -7437556 + FRAM SINE Alu 1 162 -14 781 249 95 0 chr21 27470037 27470290 -7437280 + L1MC4a LINE L1 5656 5932 -1876 372 109 0 0 chr21 27470405 27470460 -7437110 - Alu SINE Alu -2 298 244 342 0 0 0 chr21 27470470 27470508 -7437062 + (A)n Simple_repeat Simple_repeat 1 38 0 7833 141 60 16 chr21 27470665 27472059 -7435511 + Tigger1 DNA MER2_type 1 1456 -962 787 155 71 30 chr21 27472059 27472227 -7435343 + L1MC4 LINE L1 7322 7496 -546 441 193 145 55 chr21 27472314 27472441 -7435129 + L1MC4 LINE L1 7634 7777 -265 1659 162 7 30 chr21 27472441 27472744 -7434826 - AluJb SINE Alu -16 296 1 441 193 145 55 chr21 27472744 27472761 -7434809 + L1MC4 LINE L1 7777 7791 -251 239 233 96 0 chr21 27472872 27472945 -7434625 + L1MC4 LINE L1 7963 8042 0 2198 80 38 3 chr21 27473067 27473356 -7434214 - AluY SINE Alu -12 299 1 551 228 49 43 chr21 27473358 27473542 -7434028 + MIR SINE MIR 68 252 -10 216 0 0 0 chr21 27473914 27473938 -7433632 + (TA)n Simple_repeat Simple_repeat 2 25 0 992 148 6 6 chr21 27474086 27474248 -7433322 + FRAM SINE Alu 1 159 -17 342 329 35 7 chr21 27474288 27474431 -7433139 - MIR SINE MIR -26 236 90 2088 125 0 10 chr21 27474582 27474894 -7432676 - AluSx SINE Alu -3 309 1 3253 156 88 54 chr21 27474993 27475793 -7431777 + L1MB7 LINE L1 5077 5848 -336 2147 87 14 3 chr21 27475793 27476082 -7431488 + AluSc SINE Alu 1 292 -17 3253 156 88 54 chr21 27476082 27476272 -7431298 + L1MB7 LINE L1 5848 6104 -80 557 245 102 9 chr21 27476272 27476488 -7431082 - MER46A DNA MER2_type 0 236 1 3253 156 88 54 chr21 27476488 27476508 -7431062 + L1MB7 LINE L1 6104 6122 -62 4730 130 17 31 chr21 27477222 27477993 -7429577 + L1PA15 LINE L1 5385 6144 -21 378 0 0 0 chr21 27478555 27478597 -7428973 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr21 27479670 27479699 -7427871 + AT_rich Low_complexity Low_complexity 1 29 0 1990 99 67 3 chr21 27480624 27480906 -7426664 + AluSq SINE Alu 1 300 -13 2242 99 13 0 chr21 27481648 27481952 -7425618 + AluSq SINE Alu 1 308 -5 283 56 0 0 chr21 27482571 27482607 -7424963 - U2 snRNA snRNA -152 36 1 2326 75 17 0 chr21 27482625 27482919 -7424651 + AluSp SINE Alu 1 299 -14 854 225 87 96 chr21 27482919 27483515 -7424055 + L1MC5 LINE L1 6713 7303 -658 704 231 15 39 chr21 27483539 27483742 -7423828 + L1MC5 LINE L1 7603 7800 -161 2344 82 0 3 chr21 27483769 27484073 -7423497 + AluSq SINE Alu 1 303 -10 754 180 0 8 chr21 27484631 27484759 -7422811 - FLAM_C SINE Alu -16 127 1 412 209 93 79 chr21 27485724 27485939 -7421631 + L1MC4 LINE L1 5683 5900 -1908 1065 250 83 68 chr21 27485948 27486547 -7421023 + L1MC4 LINE L1 7406 8013 -29 2057 83 0 32 chr21 27487941 27488219 -7419351 - AluY SINE Alu -23 288 20 1744 134 83 21 chr21 27488219 27488509 -7419061 + AluSq SINE Alu 5 312 -1 880 161 0 28 chr21 27488937 27489080 -7418490 - FLAM_C SINE Alu -4 139 1 1106 274 20 11 chr21 27489224 27489575 -7417995 + L1MEc LINE L1 81 434 -5962 2056 126 0 14 chr21 27489579 27489873 -7417697 + AluSx SINE Alu 1 290 -22 824 242 45 19 chr21 27490011 27490314 -7417256 - Charlie1a DNA MER1_type -1061 394 1 227 292 0 0 chr21 27490406 27490471 -7417099 + A-rich Low_complexity Low_complexity 1 65 0 859 226 56 11 chr21 27490583 27490870 -7416700 + L1MEc LINE L1 2319 2618 -3597 1205 221 33 46 chr21 27490875 27491075 -7416495 + L1ME1 LINE L1 5713 5907 -259 2211 95 0 0 chr21 27491075 27491359 -7416211 + AluSc SINE Alu 1 284 -25 1205 221 33 46 chr21 27491359 27491551 -7416019 + L1ME1 LINE L1 5907 6100 -66 1222 138 56 0 chr21 27491559 27491755 -7415815 + AluJb SINE Alu 86 292 -20 243 179 45 0 chr21 27491766 27491833 -7415737 + L1MB8 LINE L1 6109 6178 0 385 272 95 27 chr21 27492004 27492151 -7415419 + L1MC4a LINE L1 6761 6917 -891 1328 231 101 18 chr21 27492292 27493014 -7414556 + L1MC4 LINE L1 7147 7961 -81 26 82 0 0 chr21 27493027 27493088 -7414482 + AT_rich Low_complexity Low_complexity 1 61 0 1829 152 10 35 chr21 27493782 27494092 -7413478 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr21 27494943 27494966 -7412604 + AT_rich Low_complexity Low_complexity 1 23 0 2332 76 0 13 chr21 27495954 27496257 -7411313 + AluY SINE Alu 1 299 -12 269 221 39 67 chr21 27496284 27496388 -7411182 + L1ME LINE L1 5565 5665 -456 311 126 0 116 chr21 27496581 27496676 -7410894 + L1PA11 LINE L1 6088 6171 -3 330 153 14 14 chr21 27496731 27496803 -7410767 + L1MC4a LINE L1 7127 7198 -610 1910 102 4 8 chr21 27496836 27497101 -7410469 + AluSq SINE Alu 39 302 -11 719 206 47 76 chr21 27497103 27497345 -7410225 + L1MC4 LINE L1 7381 7614 -428 2437 89 0 6 chr21 27497345 27497658 -7409912 + AluY SINE Alu 1 311 0 719 206 47 76 chr21 27497658 27497716 -7409854 + L1MC4 LINE L1 7614 7672 -370 25 0 0 0 chr21 27497881 27497906 -7409664 + AT_rich Low_complexity Low_complexity 1 25 0 721 156 57 0 chr21 27497981 27498103 -7409467 - FLAM_C SINE Alu -4 129 1 28 102 0 0 chr21 27498146 27498244 -7409326 + AT_rich Low_complexity Low_complexity 1 98 0 24 0 0 0 chr21 27498778 27498802 -7408768 + AT_rich Low_complexity Low_complexity 1 24 0 2045 130 3 3 chr21 27499653 27499946 -7407624 + AluSg SINE Alu 1 293 -17 2408 80 0 26 chr21 27500048 27500360 -7407210 + AluY SINE Alu 1 304 -7 1762 146 0 4 chr21 27500396 27500650 -7406920 + AluSq SINE Alu 1 253 -60 1940 65 4 23 chr21 27500793 27500874 -7406696 + AluY SINE Alu 1 82 -229 440 112 22 34 chr21 27500874 27500963 -7406607 + L1PA8 LINE L1 6085 6172 0 1940 65 4 23 chr21 27500963 27501142 -7406428 + AluY SINE Alu 82 256 -55 1099 125 0 25 chr21 27501152 27501312 -7406258 - AluSx SINE Alu -156 156 1 24 32 0 0 chr21 27501704 27501735 -7405835 + AT_rich Low_complexity Low_complexity 1 31 0 1104 165 51 90 chr21 27501894 27502149 -7405421 + AluJb SINE Alu 33 277 -35 22 0 0 0 chr21 27502154 27502176 -7405394 + AT_rich Low_complexity Low_complexity 1 22 0 258 73 49 0 chr21 27502285 27502326 -7405244 - Alu SINE Alu -11 289 247 246 95 0 0 chr21 27502689 27502731 -7404839 + (GA)n Simple_repeat Simple_repeat 1 42 0 2193 94 0 18 chr21 27503168 27503454 -7404116 + AluSg SINE Alu 9 289 -21 868 136 86 20 chr21 27503947 27504145 -7403425 + L1MA7 LINE L1 6081 6291 0 2103 112 3 0 chr21 27504151 27504458 -7403112 + AluSp SINE Alu 1 308 0 2063 114 0 7 chr21 27505974 27506254 -7401316 - AluSx SINE Alu -22 290 13 1658 150 14 18 chr21 27506270 27506550 -7401020 - AluJo SINE Alu -33 279 1 624 174 0 9 chr21 27507311 27507426 -7400144 - FLAM_A SINE Alu -19 123 10 490 203 176 14 chr21 27507493 27507715 -7399855 - Charlie5 DNA MER1_type -53 2559 2302 2494 93 0 0 chr21 27507757 27508069 -7399501 + AluSx SINE Alu 1 312 0 584 180 0 30 chr21 27508096 27508234 -7399336 - MER3 DNA MER1_type -63 146 38 806 176 0 0 chr21 27509815 27509946 -7397624 + FLAM_C SINE Alu 3 133 0 1628 121 0 130 chr21 27509950 27510281 -7397289 + AluSx SINE Alu 3 290 -12 301 294 0 22 chr21 27510284 27510376 -7397194 - L1MC4 LINE L1 -1339 6703 6614 420 248 0 0 chr21 27510378 27510511 -7397059 + (TA)n Simple_repeat Simple_repeat 2 134 0 346 82 20 0 chr21 27510515 27510564 -7397006 + AluSp SINE Alu 122 171 -132 582 161 0 0 chr21 27510564 27510657 -7396913 + AluSg/x SINE Alu 201 293 -16 301 22 0 0 chr21 27510917 27510962 -7396608 + MER41B LTR ERV1 505 549 -86 24 0 0 0 chr21 27511004 27511028 -7396542 + AT_rich Low_complexity Low_complexity 1 24 0 2367 96 0 3 chr21 27511076 27511377 -7396193 + AluSq SINE Alu 1 300 -13 299 311 10 59 chr21 27511637 27511943 -7395627 - L1M4 LINE L1 -1520 4626 4336 1559 199 7 4 chr21 27512597 27512878 -7394692 + AluJo SINE Alu 1 282 -30 2070 121 35 4 chr21 27512892 27513384 -7394186 - L1M2 LINE L1 -711 5589 5091 2969 175 38 29 chr21 27513384 27514024 -7393546 + L1MA6 LINE L1 5639 6300 0 1061 164 9 84 chr21 27514041 27514267 -7393303 + AluJo SINE Alu 1 209 -103 204 40 0 0 chr21 27514272 27514297 -7393273 + (A)n Simple_repeat Simple_repeat 1 25 0 461 89 0 170 chr21 27514384 27514417 -7393153 - L1MB5 LINE L1 -17 6157 6120 2347 66 0 17 chr21 27514417 27514718 -7392852 - AluY SINE Alu -15 296 1 461 89 0 170 chr21 27514718 27514796 -7392774 - L1MB5 LINE L1 -54 6120 6065 2176 106 0 3 chr21 27514921 27515214 -7392356 - AluSg SINE Alu -18 292 1 346 229 95 78 chr21 27515501 27515785 -7391785 - L1MC4a LINE L1 -95 7713 7425 281 239 66 24 chr21 27515965 27516178 -7391392 - L1MEc LINE L1 -2810 3405 3184 1606 237 63 44 chr21 27516291 27516815 -7390755 - MLT1F LTR MaLR -6 536 3 736 219 70 54 chr21 27516820 27516934 -7390636 - L1MEc LINE L1 -3167 3048 2937 2359 115 72 36 chr21 27516934 27517351 -7390219 - Tigger2a DNA MER2_type -1 433 2 736 219 70 54 chr21 27517351 27517478 -7390092 - L1MEc LINE L1 -3278 2937 2803 323 292 146 40 chr21 27517470 27517744 -7389826 - L1MEc LINE L1 -4122 2274 1972 2533 50 0 3 chr21 27518143 27518443 -7389127 + AluY SINE Alu 1 299 -12 2313 90 0 7 chr21 27518608 27518909 -7388661 + AluY SINE Alu 1 299 -12 1149 225 36 4 chr21 27519250 27519503 -7388067 + AluJo SINE Alu 1 261 -51 185 0 0 39 chr21 27519503 27519529 -7388041 + (CAAAAA)n Simple_repeat Simple_repeat 1 25 0 287 253 46 0 chr21 27520090 27520177 -7387393 + LTR58 LTR ERV1 350 440 -239 1407 171 24 37 chr21 27520347 27520645 -7386925 - AluJb SINE Alu -10 302 9 285 279 25 0 chr21 27520669 27520748 -7386822 + LTR35 LTR ERV1 524 604 -14 288 172 54 43 chr21 27520766 27520859 -7386711 + L1MC5 LINE L1 7171 7264 -697 567 181 71 24 chr21 27520887 27521014 -7386556 + MER5A DNA MER1_type 57 189 0 393 259 73 91 chr21 27521014 27521465 -7386105 + L1MC5 LINE L1 7330 7772 -189 2257 97 7 0 chr21 27521618 27521908 -7385662 + AluSx SINE Alu 6 297 -15 2259 91 10 3 chr21 27522776 27523072 -7384498 + AluY SINE Alu 1 298 -13 2621 48 0 3 chr21 27523576 27523887 -7383683 - AluY SINE Alu -1 310 1 471 234 81 8 chr21 27523978 27524102 -7383468 + MER5A DNA MER1_type 44 176 -13 33 56 0 0 chr21 27524475 27524529 -7383041 + AT_rich Low_complexity Low_complexity 1 54 0 608 271 92 14 chr21 27524960 27525178 -7382392 - MIR SINE MIR 0 262 28 373 200 45 0 chr21 27527017 27527127 -7380443 + L1M4 LINE L1 4389 4503 -1643 397 236 87 19 chr21 27527147 27527308 -7380262 + L1M4 LINE L1 4570 4741 -1405 2007 124 4 0 chr21 27527342 27527609 -7379961 + AluSq SINE Alu 1 268 -45 24 0 0 0 chr21 27527648 27527672 -7379898 + AT_rich Low_complexity Low_complexity 1 24 0 1969 127 3 41 chr21 27528093 27528407 -7379163 + AluSq SINE Alu 1 302 -11 305 295 21 11 chr21 27529088 27529183 -7378387 + L1M4b LINE L1 846 941 -5387 306 227 13 27 chr21 27529254 27529329 -7378241 + L1M4b LINE L1 1333 1406 -5020 2052 79 8 4 chr21 27529331 27529598 -7377972 + AluY SINE Alu 35 302 -9 1223 254 117 22 chr21 27529613 27530141 -7377429 + MLT1E LTR MaLR 1 593 0 406 292 65 14 chr21 27530141 27530345 -7377225 + L1M4b LINE L1 1441 2082 -4345 2351 92 7 3 chr21 27530379 27530684 -7376886 - AluSx SINE Alu -6 306 1 1948 138 7 16 chr21 27530870 27531174 -7376396 + AluSx SINE Alu 1 301 -11 1846 140 18 0 chr21 27531178 27531464 -7376106 + AluSx SINE Alu 1 291 -21 344 252 104 22 chr21 27531517 27531637 -7375933 + L1M4b LINE L1 2144 2278 -4148 1970 130 0 22 chr21 27531637 27531952 -7375618 + AluSg SINE Alu 1 308 -2 344 252 104 22 chr21 27531952 27531966 -7375604 + L1M4b LINE L1 2278 2289 -4137 1623 144 38 0 chr21 27531985 27532249 -7375321 + AluJb SINE Alu 35 308 -4 2235 94 3 0 chr21 27532261 27532569 -7375001 + AluSq SINE Alu 2 310 -3 1528 169 17 27 chr21 27532734 27533030 -7374540 + AluJo SINE Alu 6 298 -14 678 271 49 4 chr21 27533051 27533317 -7374253 + L1M4b LINE L1 2481 2758 -3668 2106 123 3 0 chr21 27533358 27533659 -7373911 - AluSx SINE Alu -10 302 1 1388 178 10 40 chr21 27533845 27533983 -7373587 + AluJb SINE Alu 1 142 -170 2178 97 7 3 chr21 27533983 27534283 -7373287 + AluSc SINE Alu 1 301 -8 1388 178 10 40 chr21 27534283 27534448 -7373122 + AluJb SINE Alu 142 295 -17 2314 74 0 3 chr21 27534473 27534769 -7372801 - AluSc SINE Alu -14 295 1 2147 108 0 0 chr21 27535255 27535552 -7372018 - AluSq SINE Alu -14 299 3 21 57 0 0 chr21 27535552 27535587 -7371983 + AT_rich Low_complexity Low_complexity 1 35 0 184 125 0 42 chr21 27535829 27535877 -7371693 + (TATG)n Simple_repeat Simple_repeat 2 47 0 484 187 0 11 chr21 27536453 27536544 -7371026 - FLAM_A SINE Alu -17 125 36 1979 149 0 0 chr21 27536600 27536908 -7370662 + AluSx SINE Alu 1 308 -4 231 384 20 7 chr21 27536972 27537123 -7370447 + MER5A DNA MER1_type 12 164 -25 668 226 55 0 chr21 27536995 27537141 -7370429 - MER5B DNA MER1_type -23 155 2 354 279 129 7 chr21 27537141 27537281 -7370289 + L1MC5 LINE L1 7365 7521 -440 2110 110 0 0 chr21 27537294 27537593 -7369977 + AluSc SINE Alu 1 299 -10 1124 167 116 36 chr21 27537601 27537852 -7369718 + AluJo SINE Alu 6 276 -36 2529 33 0 3 chr21 27537943 27538245 -7369325 + AluY SINE Alu 1 301 -10 420 247 55 118 chr21 27538284 27538539 -7369031 + L1MC5 LINE L1 7668 7906 -55 1077 92 0 0 chr21 27538634 27538776 -7368794 + AluSq/x SINE Alu 1 142 -171 1475 79 59 0 chr21 27538777 27538979 -7368591 + AluSq SINE Alu 21 234 -79 22 0 0 0 chr21 27539004 27539026 -7368544 + AT_rich Low_complexity Low_complexity 1 22 0 513 169 52 78 chr21 27539086 27539240 -7368330 - AluJb SINE Alu -8 304 155 1269 171 66 49 chr21 27539568 27539855 -7367715 - AluJo SINE Alu -20 292 1 21 0 0 0 chr21 27540157 27540178 -7367392 + AT_rich Low_complexity Low_complexity 1 21 0 207 62 78 16 chr21 27541346 27541410 -7366160 + (CGGG)n Simple_repeat Simple_repeat 2 69 0 225 0 0 0 chr21 27541990 27542015 -7365555 + (CCG)n Simple_repeat Simple_repeat 2 26 0 351 236 167 99 chr21 27543156 27543389 -7364181 + MIR SINE MIR 14 262 0 1943 88 24 30 chr21 27543408 27543705 -7363865 - AluSx SINE Alu -17 295 1 2113 85 0 10 chr21 27543753 27544046 -7363524 + AluSc SINE Alu 2 291 -18 1618 167 7 7 chr21 27545059 27545347 -7362223 + AluJb SINE Alu 3 290 -22 225 323 31 21 chr21 27545992 27546088 -7361482 - MIR SINE MIR -117 145 49 263 167 114 114 chr21 27546097 27546171 -7361399 - MIR SINE MIR -58 204 128 1403 201 10 7 chr21 27546171 27546459 -7361111 + AluJo SINE Alu 3 291 -21 263 167 114 114 chr21 27546459 27546498 -7361072 - MIR SINE MIR -133 129 91 1040 184 111 8 chr21 27547036 27547280 -7360290 - AluJo SINE Alu -3 309 41 606 164 173 0 chr21 27547343 27547453 -7360117 - FLAM_C SINE Alu -2 131 3 205 314 14 43 chr21 27547968 27548038 -7359532 - MIR SINE MIR -1 261 194 204 279 0 0 chr21 27548248 27548309 -7359261 + T-rich Low_complexity Low_complexity 3 63 0 1627 179 7 0 chr21 27548739 27549029 -7358541 - AluJb SINE Alu -16 296 5 1244 239 104 40 chr21 27549047 27549068 -7358502 + L2 LINE L2 2444 2462 -851 2176 104 13 0 chr21 27549068 27549367 -7358203 - AluSx SINE Alu -9 303 1 1244 239 104 40 chr21 27549367 27549563 -7358007 + L2 LINE L2 2462 2644 -669 2292 99 0 0 chr21 27549563 27549866 -7357704 + AluSq SINE Alu 1 303 -10 1244 239 104 40 chr21 27549866 27550439 -7357131 + L2 LINE L2 2644 3312 -1 2046 83 10 17 chr21 27550539 27550829 -7356741 + AluSx SINE Alu 3 290 -22 687 158 0 17 chr21 27551628 27551748 -7355822 - FLAM_C SINE Alu -2 141 24 1704 160 0 7 chr21 27551788 27552082 -7355488 + AluJb SINE Alu 10 301 -11 973 138 26 37 chr21 27552187 27552336 -7355234 - L1PA16 LINE L1 -4 6162 6014 2170 92 13 25 chr21 27552336 27552653 -7354917 - AluSq SINE Alu 0 313 1 973 138 26 37 chr21 27552653 27552692 -7354878 - L1PA16 LINE L1 -152 6014 5976 264 109 0 22 chr21 27552692 27552738 -7354832 + MSTA LTR MaLR 61 105 -323 1378 78 72 0 chr21 27552753 27552946 -7354624 - AluSg/x SINE Alu -4 306 100 1969 246 47 17 chr21 27552993 27553522 -7354048 + L1ME1 LINE L1 5617 6161 -5 1961 90 104 0 chr21 27553674 27553952 -7353618 - AluSx SINE Alu -3 309 3 1676 163 7 13 chr21 27554097 27554403 -7353167 - AluJo SINE Alu -8 304 1 2258 92 3 0 chr21 27554526 27554829 -7352741 - AluSx SINE Alu -8 304 1 1180 167 4 57 chr21 27555003 27555267 -7352303 + AluJo SINE Alu 1 250 -62 365 265 145 21 chr21 27555330 27555564 -7352006 - LTR33 LTR ERVL -54 467 205 262 278 49 49 chr21 27555739 27555901 -7351669 - L1MC/D LINE L1 -358 5884 5723 1437 184 0 11 chr21 27556037 27556348 -7351222 + AluJo SINE Alu 19 326 0 505 111 11 11 chr21 27556451 27556541 -7351029 - L1MB4 LINE L1 0 6180 6091 2161 116 0 0 chr21 27556592 27556886 -7350684 - AluSx SINE Alu -18 294 1 412 314 68 0 chr21 27557127 27557318 -7350252 - L1ME LINE L1 -349 5772 5569 428 250 21 0 chr21 27557481 27557577 -7349993 - L2 LINE L2 -1 3312 3215 1524 193 104 67 chr21 27557828 27558254 -7349316 + L1ME2 LINE L1 5643 6091 -73 2094 109 14 0 chr21 27558254 27558548 -7349022 - AluSx SINE Alu -14 298 1 1524 193 104 67 chr21 27558548 27558613 -7348957 + L1ME2 LINE L1 6091 6152 -12 2072 129 0 3 chr21 27558732 27559043 -7348527 + AluSx SINE Alu 1 310 -2 2151 88 11 0 chr21 27559050 27559333 -7348237 + AluSg SINE Alu 1 286 -24 1959 153 0 10 chr21 27559458 27559766 -7347804 + AluSq SINE Alu 1 305 -8 2211 79 0 20 chr21 27559827 27560132 -7347438 - AluSg SINE Alu -11 299 1 2321 126 38 59 chr21 27560514 27560958 -7346612 + LTR36 LTR ERV1 1 435 -176 946 171 145 43 chr21 27560962 27561109 -7346461 - AluJb SINE Alu 0 317 186 688 75 7 137 chr21 27561109 27561208 -7346362 + L1MB3 LINE L1 6056 6132 -51 1760 154 7 0 chr21 27561208 27561500 -7346070 - AluSx SINE Alu -18 294 1 688 75 7 137 chr21 27561500 27561546 -7346024 + L1MB3 LINE L1 6132 6182 -1 946 171 145 43 chr21 27561546 27561665 -7345905 - AluJb SINE Alu -131 186 27 339 256 122 67 chr21 27561682 27561787 -7345783 - L1ME LINE L1 -746 5400 5279 2282 82 0 7 chr21 27561787 27562092 -7345478 - AluSp SINE Alu -10 303 1 339 256 122 67 chr21 27562092 27562166 -7345404 - L1ME LINE L1 -867 5279 5211 651 192 13 26 chr21 27562209 27562360 -7345210 + FRAM SINE Alu 13 161 -15 180 0 0 0 chr21 27562618 27562638 -7344932 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2087 106 0 0 chr21 27562642 27562924 -7344646 - AluSq SINE Alu -31 282 1 1872 181 133 5 chr21 27563103 27563500 -7344070 + L1PA16 LINE L1 5713 6160 -6 2076 112 3 13 chr21 27563507 27563820 -7343750 + AluSg SINE Alu 1 310 0 2411 60 0 0 chr21 27563927 27564228 -7343342 - AluY SINE Alu -10 301 1 26 30 0 0 chr21 27564742 27564775 -7342795 + AT_rich Low_complexity Low_complexity 1 33 0 2442 53 0 0 chr21 27565430 27565730 -7341840 - AluY SINE Alu 0 311 12 194 0 39 0 chr21 27565770 27565796 -7341774 + (TA)n Simple_repeat Simple_repeat 2 28 0 1905 119 20 7 chr21 27565797 27566090 -7341480 - AluSx SINE Alu -15 297 1 2152 61 7 14 chr21 27566368 27566661 -7340909 - AluY SINE Alu -20 291 1 1680 138 27 20 chr21 27566820 27567118 -7340452 - AluSx SINE Alu -12 300 1 1300 174 40 4 chr21 27568113 27568360 -7339210 - AluJo SINE Alu -26 286 31 2111 96 0 7 chr21 27568464 27568757 -7338813 + AluSg SINE Alu 6 296 -14 1639 153 43 0 chr21 27569675 27569956 -7337614 - AluSq SINE Alu -20 293 1 1259 194 148 0 chr21 27570099 27570383 -7337187 + MER7A DNA MER2_type 23 346 0 1476 99 0 19 chr21 27570445 27570656 -7336914 - AluSg/x SINE Alu -19 291 85 2112 212 60 38 chr21 27571657 27572186 -7335384 - MER82 DNA MER2_type -29 624 84 2130 109 0 3 chr21 27572373 27572676 -7334894 + AluSq SINE Alu 1 302 -11 528 138 0 0 chr21 27572944 27573024 -7334546 + HY3 scRNA scRNA 10 89 -12 261 0 0 0 chr21 27573510 27573539 -7334031 + (CA)n Simple_repeat Simple_repeat 1 29 0 339 196 10 108 chr21 27573751 27573853 -7333717 - U13 snRNA snRNA 0 104 13 207 0 0 0 chr21 27575458 27575481 -7332089 + (CA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr21 27575735 27575756 -7331814 + AT_rich Low_complexity Low_complexity 1 21 0 202 116 0 70 chr21 27577137 27577180 -7330390 + (CCCG)n Simple_repeat Simple_repeat 3 42 0 34 65 0 0 chr21 27577237 27577299 -7330271 + GC_rich Low_complexity Low_complexity 1 62 0 214 260 26 0 chr21 27577505 27577582 -7329988 + C-rich Low_complexity Low_complexity 4 82 0 33 0 0 0 chr21 27577656 27577689 -7329881 + GC_rich Low_complexity Low_complexity 1 33 0 1646 128 12 0 chr21 27578131 27578389 -7329181 - AluJb SINE Alu -22 290 30 237 189 19 0 chr21 27578762 27578815 -7328755 - L2 LINE L2 -13 3259 3206 1017 179 106 9 chr21 27579293 27579511 -7328059 - 7SLRNA srpRNA srpRNA -78 242 4 1801 239 66 33 chr21 27579513 27580062 -7327508 + L1ME3A LINE L1 5580 6146 -24 2195 81 0 0 chr21 27580064 27580373 -7327197 - AluY SINE Alu 0 309 1 1053 176 4 54 chr21 27580690 27580929 -7326641 + AluJo SINE Alu 85 311 -1 250 259 98 18 chr21 27581074 27581186 -7326384 - L1MC/D LINE L1 -1906 5902 5782 5148 204 36 44 chr21 27581253 27581527 -7326043 + L1M1 LINE L1 1188 1463 -4919 2099 136 0 0 chr21 27581527 27581828 -7325742 + AluSx SINE Alu 1 301 -11 5148 204 36 44 chr21 27581828 27582351 -7325219 + L1M1 LINE L1 1463 1989 -4393 2197 82 3 13 chr21 27582351 27582656 -7324914 - AluY SINE Alu -9 302 1 5148 204 36 44 chr21 27582656 27582850 -7324720 + L1M1 LINE L1 1989 2183 -4199 2061 134 0 0 chr21 27582850 27583156 -7324414 + AluSx SINE Alu 1 306 -6 5148 204 36 44 chr21 27583156 27583268 -7324302 + L1M1 LINE L1 2183 2294 -4088 836 232 0 40 chr21 27583268 27583445 -7324125 + FAM SINE Alu 1 170 -5 5148 204 36 44 chr21 27583445 27584000 -7323570 + L1M1 LINE L1 2294 2852 -3530 1934 131 0 7 chr21 27584000 27584290 -7323280 - AluSx SINE Alu -24 288 1 5148 204 36 44 chr21 27584290 27584566 -7323004 + L1M1 LINE L1 2852 3129 -3253 2260 76 0 10 chr21 27584566 27584868 -7322702 + AluY SINE Alu 1 299 -12 5148 204 36 44 chr21 27584868 27585015 -7322555 + L1M1 LINE L1 3129 3276 -3106 2145 92 0 3 chr21 27585015 27585309 -7322261 + AluSc SINE Alu 1 293 -16 5148 204 36 44 chr21 27585309 27585846 -7321724 + L1M1 LINE L1 3276 3967 -2415 2730 95 3 3 chr21 27585853 27586219 -7321351 - HSMAR1 DNA Mariner -1 1286 921 1064 62 0 0 chr21 27586219 27586347 -7321223 - THE1A LTR MaLR 0 355 228 1822 114 3 81 chr21 27586347 27586681 -7320889 - AluSq SINE Alu -5 308 1 361 134 194 0 chr21 27586687 27586754 -7320816 + MER41C-int LTR ERV1 6583 6662 -1094 1126 138 0 0 chr21 27586754 27586921 -7320649 + AluSx SINE Alu 23 189 -123 8432 75 25 0 chr21 27586922 27587993 -7319577 + MER41C-int LTR ERV1 6659 7756 0 2444 119 46 3 chr21 27587993 27588362 -7319208 + MER41C LTR ERV1 1 385 -169 1363 193 4 8 chr21 27588372 27588636 -7318934 - AluJo SINE Alu -10 302 40 2066 103 0 0 chr21 27588662 27588943 -7318627 - AluSx SINE Alu -31 281 1 371 174 0 98 chr21 27588976 27589068 -7318502 + AluJb SINE Alu 41 117 -185 264 122 0 52 chr21 27589068 27589134 -7318436 + L1MA9 LINE L1 6102 6159 -132 1590 164 0 34 chr21 27589320 27589618 -7317952 + AluJo SINE Alu 1 288 -24 248 221 0 73 chr21 27589619 27589687 -7317883 - L2 LINE L2 -86 3227 3165 2285 94 0 0 chr21 27590080 27590379 -7317191 - AluSq SINE Alu -14 299 1 209 255 0 0 chr21 27591000 27591051 -7316519 + GA-rich Low_complexity Low_complexity 3 53 0 2556 49 0 0 chr21 27591537 27591844 -7315726 + AluY SINE Alu 5 311 0 808 237 75 0 chr21 27592306 27592492 -7315078 - AluJo SINE Alu -11 301 102 2052 111 17 10 chr21 27593076 27593373 -7314197 - AluSx SINE Alu -13 299 1 1551 138 112 23 chr21 27593721 27594025 -7313545 - L1MB2 LINE L1 -6 6165 5835 1161 158 39 122 chr21 27594030 27594365 -7313205 - AluJo SINE Alu -5 307 1 2200 109 0 0 chr21 27594375 27594677 -7312893 - AluSx SINE Alu -10 302 1 704 220 0 0 chr21 27594685 27594817 -7312753 - FLAM_C SINE Alu -1 132 1 29 0 0 0 chr21 27594819 27594848 -7312722 + AT_rich Low_complexity Low_complexity 1 29 0 1778 126 0 4 chr21 27594858 27595120 -7312450 - AluSx SINE Alu -51 261 1 561 216 31 0 chr21 27595208 27595370 -7312200 + C-rich Low_complexity Low_complexity 3 169 0 1170 191 4 43 chr21 27595377 27595633 -7311937 - AluJb SINE Alu -20 292 47 526 229 28 45 chr21 27595635 27595811 -7311759 - L1MB8 LINE L1 -71 6107 5940 1059 225 0 0 chr21 27595813 27596031 -7311539 + AluJb SINE Alu 83 300 -12 1097 163 60 45 chr21 27596032 27596384 -7311186 + L1ME LINE L1 5163 5524 -642 2113 100 3 7 chr21 27596398 27596698 -7310872 - AluSx SINE Alu -13 299 1 225 152 0 169 chr21 27596698 27596757 -7310813 + L1ME LINE L1 5512 5560 -606 2165 70 11 3 chr21 27596758 27597044 -7310526 + AluSc SINE Alu 1 288 -21 814 119 0 0 chr21 27597054 27597163 -7310407 + AluSg/x SINE Alu 181 289 -21 315 0 0 0 chr21 27597184 27597219 -7310351 + (CA)n Simple_repeat Simple_repeat 2 36 0 248 158 18 0 chr21 27597219 27597276 -7310294 + GA-rich Low_complexity Low_complexity 1 58 0 1539 210 90 37 chr21 27597281 27597691 -7309879 + MER70B LTR ERVL 4 435 -143 233 69 0 0 chr21 27597762 27597791 -7309779 + MER70B LTR ERVL 539 567 -11 823 167 8 0 chr21 27597909 27598041 -7309529 - FLAM_C SINE Alu 0 133 1 1670 175 0 32 chr21 27598081 27598396 -7309174 - AluJo SINE Alu -7 305 1 29 47 0 0 chr21 27598420 27598463 -7309107 + AT_rich Low_complexity Low_complexity 1 43 0 2206 108 0 7 chr21 27598689 27598994 -7308576 + AluSx SINE Alu 1 303 -9 341 185 0 0 chr21 27599015 27599080 -7308490 - L1MB5 LINE L1 0 6174 6110 2186 112 3 0 chr21 27599181 27599493 -7308077 - AluSq SINE Alu 0 313 1 2352 55 13 3 chr21 27599633 27599941 -7307629 - AluY SINE Alu 0 311 1 579 200 0 0 chr21 27599947 27600057 -7307513 - FLAM_C SINE Alu -32 111 2 569 173 16 0 chr21 27600063 27600190 -7307380 - L1MA4 LINE L1 -3 6297 6169 962 163 0 0 chr21 27600215 27600368 -7307202 + FRAM SINE Alu 1 146 -30 2291 96 3 0 chr21 27601185 27601497 -7306073 + AluSq SINE Alu 1 313 0 251 133 0 33 chr21 27601654 27601714 -7305856 + (TCCCC)n Simple_repeat Simple_repeat 3 60 0 1778 159 7 3 chr21 27601714 27602004 -7305566 - AluJb SINE Alu -21 291 1 1736 168 17 0 chr21 27602304 27602601 -7304969 - AluJb SINE Alu -10 302 1 2198 107 3 0 chr21 27602862 27603171 -7304399 - AluSx SINE Alu -2 310 1 565 171 143 0 chr21 27603250 27603355 -7304215 - FLAM_C SINE Alu -22 121 2 2085 211 67 17 chr21 27603810 27604285 -7303285 + MLT1D LTR MaLR 5 503 -2 2060 118 6 22 chr21 27604703 27605016 -7302554 - AluSx SINE Alu -4 308 1 2077 120 7 0 chr21 27605286 27605767 -7301803 - AluSq SINE Alu 0 313 1 1625 157 7 11 chr21 27605796 27606077 -7301493 - AluJb SINE Alu -29 283 4 2264 52 14 3 chr21 27606180 27606470 -7301100 - AluSc SINE Alu -16 293 1 3809 128 39 31 chr21 27608403 27608516 -7299054 - L1MB3 LINE L1 -2 6181 6070 1608 168 53 3 chr21 27608516 27608801 -7298769 - AluSx SINE Alu -13 299 1 3809 128 39 31 chr21 27608801 27608815 -7298755 - L1MB3 LINE L1 -113 6070 6058 2010 136 0 0 chr21 27608815 27609117 -7298453 - AluSx SINE Alu -10 302 1 3809 128 39 31 chr21 27609117 27609689 -7297881 - L1MB3 LINE L1 -125 6058 5476 2296 79 0 13 chr21 27609701 27610016 -7297554 - AluY SINE Alu 0 311 1 1127 132 0 20 chr21 27610018 27610033 -7297537 - AluSg/x SINE Alu -3 307 293 2323 97 0 0 chr21 27610033 27610344 -7297226 - AluSq SINE Alu -2 311 1 1127 132 0 20 chr21 27610344 27610508 -7297062 - AluSg/x SINE Alu -17 293 130 2182 98 0 0 chr21 27610508 27610803 -7296767 - AluSx SINE Alu -17 295 1 1127 132 0 20 chr21 27610803 27610819 -7296751 - AluSg/x SINE Alu -180 130 115 890 144 69 0 chr21 27610823 27610997 -7296573 - L1MB3 LINE L1 -710 5470 5285 2016 111 0 10 chr21 27611001 27611322 -7296248 - AluSx SINE Alu 0 318 1 1170 81 29 23 chr21 27611333 27611507 -7296063 - L1PA13 LINE L1 0 6163 5989 1554 136 30 53 chr21 27613612 27613914 -7293656 - AluJo SINE Alu -17 295 1 1302 139 39 9 chr21 27614855 27615085 -7292485 + AluJb SINE Alu 1 237 -75 394 332 77 5 chr21 27615106 27615302 -7292268 - L1MC4a LINE L1 -148 7660 7451 381 123 0 0 chr21 27615813 27615878 -7291692 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 954 114 0 7 chr21 27615894 27616034 -7291536 - AluJb SINE Alu -173 139 1 856 217 11 0 chr21 27616034 27616209 -7291361 - FRAM SINE Alu -2 174 1 310 293 0 0 chr21 27616211 27616286 -7291284 - L1MC4 LINE L1 -1505 6537 6463 180 0 0 0 chr21 27616805 27616825 -7290745 + (T)n Simple_repeat Simple_repeat 1 20 0 1871 178 86 57 chr21 27616934 27617411 -7290159 - LTR42 LTR ERVL -1 494 4 381 333 28 0 chr21 27620188 27620296 -7287274 - MIR SINE MIR -130 132 22 2000 131 3 10 chr21 27620407 27620712 -7286858 - AluSx SINE Alu -9 303 1 1940 127 23 3 chr21 27620810 27621110 -7286460 + AluSx SINE Alu 1 306 -6 2176 162 25 6 chr21 27621250 27621608 -7285962 - MLT1A1 LTR MaLR 0 365 1 1540 168 36 32 chr21 27621625 27621934 -7285636 - AluJo SINE Alu -1 311 2 2126 105 3 0 chr21 27622131 27622426 -7285144 - AluSx SINE Alu -16 296 1 2093 98 3 41 chr21 27622876 27623021 -7284549 + AluSx SINE Alu 1 150 -162 2118 72 43 0 chr21 27623021 27623300 -7284270 + AluY SINE Alu 1 291 -20 2093 98 3 41 chr21 27623300 27623471 -7284099 + AluSx SINE Alu 150 305 -7 2007 106 31 3 chr21 27625374 27625667 -7281903 - AluSx SINE Alu -11 301 1 1111 59 0 0 chr21 27625667 27625802 -7281768 - AluSq/x SINE Alu -178 135 1 2003 109 20 10 chr21 27626195 27626499 -7281071 - AluSx SINE Alu -3 309 3 669 73 248 28 chr21 27626675 27626784 -7280786 - FLAM_C SINE Alu 0 133 1 1647 156 10 24 chr21 27627663 27627966 -7279604 - AluJo SINE Alu -15 297 12 900 146 15 0 chr21 27627973 27628110 -7279460 - AluJo SINE Alu -173 139 1 22 35 0 0 chr21 27628124 27628153 -7279417 + AT_rich Low_complexity Low_complexity 1 29 0 28 48 0 0 chr21 27628159 27628201 -7279369 + AT_rich Low_complexity Low_complexity 1 42 0 2475 162 32 34 chr21 27628372 27628842 -7278728 + Tigger1 DNA MER2_type 1 469 -1949 26 0 0 0 chr21 27628850 27628876 -7278694 + AT_rich Low_complexity Low_complexity 1 26 0 2185 89 0 4 chr21 27628877 27629157 -7278413 - AluSx SINE Alu -23 289 11 23 0 0 0 chr21 27630080 27630103 -7277467 + AT_rich Low_complexity Low_complexity 1 23 0 2108 41 52 4 chr21 27630104 27630375 -7277195 - AluY SINE Alu -27 284 1 2372 86 3 0 chr21 27630380 27630683 -7276887 - AluSx SINE Alu -8 304 1 962 113 21 0 chr21 27630686 27630828 -7276742 - AluSg/x SINE Alu -10 300 156 2006 116 7 29 chr21 27631224 27631534 -7276036 + AluSx SINE Alu 1 303 -9 203 138 0 0 chr21 27631564 27631593 -7275977 + (CATA)n Simple_repeat Simple_repeat 3 31 0 2110 124 0 7 chr21 27631596 27631895 -7275675 - AluSx SINE Alu -15 297 1 1939 149 14 3 chr21 27631960 27632256 -7275314 - AluJb SINE Alu -13 299 1 23 0 0 0 chr21 27632637 27632660 -7274910 + AT_rich Low_complexity Low_complexity 1 23 0 1945 157 10 3 chr21 27633707 27634006 -7273564 + AluJb SINE Alu 1 301 -11 239 29 57 0 chr21 27634006 27634041 -7273529 + (CAGAA)n Simple_repeat Simple_repeat 1 37 0 418 324 108 5 chr21 27634052 27634265 -7273305 + L1ME2 LINE L1 5448 5682 -439 545 242 47 0 chr21 27634416 27634544 -7273026 + L2 LINE L2 3180 3313 0 1224 245 32 7 chr21 27634931 27635241 -7272329 + HAL1 LINE L1 1530 1847 -660 1458 161 54 99 chr21 27635738 27636143 -7271427 + MLT1B LTR MaLR 1 387 -3 2209 120 0 10 chr21 27636348 27636656 -7270914 - AluSx SINE Alu -7 305 1 1440 219 14 28 chr21 27637790 27638146 -7269424 + L1ME2 LINE L1 5805 6155 -9 751 235 70 30 chr21 27638859 27639059 -7268511 - MER3 DNA MER1_type 0 209 2 397 186 0 0 chr21 27641375 27641469 -7266101 + MLT1G1 LTR MaLR 93 206 -389 312 27 0 0 chr21 27641469 27641506 -7266064 + (TC)n Simple_repeat Simple_repeat 2 38 0 345 24 0 0 chr21 27641505 27641547 -7266023 + (TG)n Simple_repeat Simple_repeat 1 42 0 1328 180 75 7 chr21 27641676 27641954 -7265616 - AluJo SINE Alu -15 297 1 239 250 62 38 chr21 27641964 27642044 -7265526 - HAL1 LINE L1 -2413 94 13 3284 217 79 56 chr21 27642118 27643347 -7264223 - L1MC5 LINE L1 -44 7917 6661 2295 95 0 23 chr21 27643797 27644102 -7263468 - AluSx SINE Alu -14 298 1 2575 108 0 83 chr21 27644312 27644522 -7263048 - THE1B LTR MaLR 0 364 201 2369 66 0 16 chr21 27644522 27644827 -7262743 - AluY SINE Alu -10 301 2 2575 108 0 83 chr21 27644827 27645013 -7262557 - THE1B LTR MaLR -163 201 1 326 198 79 94 chr21 27645139 27645252 -7262318 - L1ME4a LINE L1 -171 5950 5840 2331 103 3 10 chr21 27645252 27645562 -7262008 - AluSx SINE Alu -4 308 1 326 198 79 94 chr21 27645562 27645650 -7261920 - L1ME4a LINE L1 -281 5840 5752 2168 142 3 0 chr21 27646005 27646316 -7261254 + AluJo SINE Alu 1 312 0 740 219 0 7 chr21 27646340 27646491 -7261079 + MLT1A1 LTR MaLR 28 177 -188 22 35 0 0 chr21 27646643 27646672 -7260898 + AT_rich Low_complexity Low_complexity 1 29 0 2160 136 0 3 chr21 27647002 27647310 -7260260 + AluSx SINE Alu 1 307 -5 1897 125 45 3 chr21 27647864 27648151 -7259419 - AluSg SINE Alu -11 299 1 249 300 0 38 chr21 27650513 27650593 -7256977 - MIR SINE MIR -107 101 25 1653 175 0 42 chr21 27650635 27650762 -7256808 + AluJo SINE Alu 1 132 -180 2235 108 0 13 chr21 27650762 27651076 -7256494 - AluSx SINE Alu -2 310 1 1653 175 0 42 chr21 27651076 27651256 -7256314 + AluJo SINE Alu 132 295 -17 263 228 98 54 chr21 27651657 27651749 -7255821 - MIR SINE MIR -104 158 63 279 245 10 31 chr21 27651782 27651880 -7255690 + (TATATG)n Simple_repeat Simple_repeat 2 97 0 1027 225 84 19 chr21 27653205 27653516 -7254054 - MER46C DNA MER2_type -1 337 7 2637 37 0 3 chr21 27654143 27654443 -7253127 + AluY SINE Alu 1 299 -12 189 0 0 0 chr21 27655341 27655362 -7252208 + (TA)n Simple_repeat Simple_repeat 2 22 0 1996 150 3 6 chr21 27655363 27655676 -7251894 - AluJb SINE Alu 0 312 1 1715 159 20 7 chr21 27656498 27656823 -7250747 + AluJb SINE Alu 1 312 0 1135 185 38 71 chr21 27657338 27657678 -7249892 + LTR56 LTR ERV1 1 329 -116 2462 74 0 0 chr21 27658280 27658578 -7248992 - AluSc SINE Alu -11 298 1 2070 202 77 39 chr21 27659274 27659897 -7247673 - L1ME1 LINE L1 -2 6164 5566 2288 99 13 3 chr21 27659897 27660200 -7247370 + AluSq SINE Alu 1 306 -7 2070 202 77 39 chr21 27660200 27660528 -7247042 - L1ME1 LINE L1 -600 5566 4750 1160 157 5 25 chr21 27660528 27660732 -7246838 - AluJb SINE Alu -13 299 100 1886 178 0 0 chr21 27661287 27661580 -7245990 - AluJo SINE Alu -19 293 1 22 0 0 0 chr21 27662417 27662439 -7245131 + AT_rich Low_complexity Low_complexity 1 22 0 1930 94 0 8 chr21 27662455 27662700 -7244870 - AluSq SINE Alu -70 243 1 1934 140 3 17 chr21 27663256 27663548 -7244022 - AluJb SINE Alu -24 288 1 487 325 22 18 chr21 27663631 27663859 -7243711 + L2 LINE L2 3085 3313 0 298 240 107 40 chr21 27663954 27664104 -7243466 + L1MC4 LINE L1 3976 4135 -2011 1809 147 30 0 chr21 27664232 27664497 -7243073 - AluJb SINE Alu -22 290 18 460 283 85 58 chr21 27664602 27665001 -7242569 + L1MC4 LINE L1 4460 4869 -1277 22 0 0 0 chr21 27665232 27665254 -7242316 + AT_rich Low_complexity Low_complexity 1 22 0 490 229 170 46 chr21 27665309 27665527 -7242043 + L1MC4 LINE L1 5254 5498 -2310 2798 159 36 36 chr21 27665697 27666201 -7241369 + MLT1D LTR MaLR 2 505 0 1147 232 98 52 chr21 27666633 27667033 -7240537 + L1MC4 LINE L1 6461 6878 -1164 450 195 0 0 chr21 27667037 27667119 -7240451 + L1MC4 LINE L1 6931 7012 -1030 702 203 177 47 chr21 27667125 27667317 -7240253 + AluSg/x SINE Alu 82 298 -11 788 239 69 42 chr21 27667331 27667637 -7239933 + L1MC4 LINE L1 7274 7587 -455 1392 143 143 30 chr21 27667816 27668082 -7239488 + AluJb SINE Alu 1 296 -16 685 302 106 46 chr21 27668666 27670232 -7237338 - L2 LINE L2 0 3272 1527 2326 96 13 0 chr21 27670514 27670817 -7236753 + AluSx SINE Alu 1 307 -5 180 216 157 0 chr21 27670838 27670889 -7236681 + L2 LINE L2 3160 3218 -54 1446 278 42 8 chr21 27671342 27671838 -7235732 - L2 LINE L2 -648 2666 2154 502 282 20 0 chr21 27673153 27673302 -7234268 - L1ME LINE L1 -420 5701 5550 319 308 70 0 chr21 27673341 27673484 -7234086 - L1ME LINE L1 -2338 5470 5318 2094 130 10 10 chr21 27674173 27674481 -7233089 - AluSx SINE Alu -4 308 1 1318 214 108 46 chr21 27674618 27675053 -7232517 - MLT1C LTR MaLR -5 462 1 678 143 111 0 chr21 27675339 27675465 -7232105 + AluSc SINE Alu 168 307 -2 1787 228 38 3 chr21 27675675 27676043 -7231527 + LTR51 LTR ERV1 218 598 -73 345 329 34 0 chr21 27676534 27676680 -7230890 + MIR SINE MIR 112 262 0 21 0 0 0 chr21 27676996 27677017 -7230553 + AT_rich Low_complexity Low_complexity 1 21 0 1408 174 6 75 chr21 27677547 27677880 -7229690 - AluJo SINE Alu 0 312 3 710 276 22 0 chr21 27680461 27680642 -7226928 + MIR SINE MIR 68 252 -10 231 198 9 54 chr21 27680680 27680791 -7226779 + (TTA)n Simple_repeat Simple_repeat 2 107 0 47 86 0 0 chr21 27683760 27683877 -7223693 + AT_rich Low_complexity Low_complexity 1 117 0 358 195 35 29 chr21 27683934 27684108 -7223462 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 214 134 85 0 chr21 27684141 27684305 -7223265 + (TA)n Simple_repeat Simple_repeat 1 178 0 23 33 0 0 chr21 27684307 27684337 -7223233 + AT_rich Low_complexity Low_complexity 1 30 0 1946 142 26 3 chr21 27684412 27684714 -7222856 + AluJb SINE Alu 1 309 -3 2267 118 3 13 chr21 27685087 27685400 -7222170 - AluSx SINE Alu -2 310 1 2225 120 0 0 chr21 27685410 27685709 -7221861 - AluSx SINE Alu -13 299 1 213 178 0 0 chr21 27685933 27685978 -7221592 + CT-rich Low_complexity Low_complexity 2 46 0 2307 112 0 0 chr21 27685978 27686283 -7221287 - AluSc SINE Alu -2 307 3 1467 142 18 124 chr21 27686293 27686631 -7220939 - AluJb SINE Alu 0 302 1 28 61 0 0 chr21 27687205 27687254 -7220316 + AT_rich Low_complexity Low_complexity 1 49 0 2165 80 43 0 chr21 27687254 27687530 -7220040 - AluSg SINE Alu -22 288 1 933 158 13 13 chr21 27687552 27687704 -7219866 - FRAM SINE Alu -14 162 11 262 128 47 128 chr21 27687859 27687898 -7219672 - LTR54 LTR ERV1 0 510 480 2285 93 10 3 chr21 27687898 27688199 -7219371 - AluSp SINE Alu -10 303 1 262 128 47 128 chr21 27688199 27688245 -7219325 - LTR54 LTR ERV1 -30 480 432 851 223 40 12 chr21 27688225 27688575 -7218995 - MER57B LTR ERV1 -58 345 10 2219 135 0 0 chr21 27688607 27688911 -7218659 - AluSx SINE Alu -8 304 1 1743 157 0 0 chr21 27689678 27689945 -7217625 - AluJo SINE Alu -44 268 2 245 294 46 37 chr21 27690183 27690292 -7217278 - MIR3 SINE MIR -15 193 84 660 207 36 0 chr21 27690396 27690569 -7217001 + MER58B DNA MER1_type 40 340 -1 1775 192 44 8 chr21 27690604 27690989 -7216581 - MLT1C LTR MaLR 0 467 69 2187 123 0 0 chr21 27690993 27691285 -7216285 - AluSq SINE Alu -21 292 1 27 73 0 0 chr21 27691624 27691679 -7215891 + AT_rich Low_complexity Low_complexity 1 55 0 312 164 0 0 chr21 27691743 27691804 -7215766 - FAM SINE Alu -2 177 117 733 147 39 70 chr21 27691804 27691960 -7215610 - AluJo SINE Alu -159 153 3 674 283 6 0 chr21 27692012 27692185 -7215385 + MER45A DNA AcHobo 4 177 -1 993 310 46 30 chr21 27692291 27692352 -7215218 - L1MC4a LINE L1 -1919 5958 5899 1792 166 3 10 chr21 27692352 27692653 -7214917 - AluJo SINE Alu -13 299 1 993 310 46 30 chr21 27692653 27693217 -7214353 - L1MC4a LINE L1 -1978 5899 5323 2651 105 13 5 chr21 27693230 27693602 -7213968 - THE1C LTR MaLR 0 375 1 322 313 28 51 chr21 27693604 27693821 -7213749 - L1MC4a LINE L1 -904 5311 5100 1817 167 0 0 chr21 27695220 27695496 -7212074 - AluJo SINE Alu -31 281 6 880 89 7 0 chr21 27695500 27695635 -7211935 + MER65A LTR ERV1 293 428 -17 501 159 0 0 chr21 27695774 27695862 -7211708 - AluJb SINE Alu -14 298 211 553 107 0 0 chr21 27695900 27695984 -7211586 - L1MC1 LINE L1 -44 6289 6206 468 316 54 54 chr21 27696025 27696398 -7211172 - L1MC4a LINE L1 -2832 3383 3011 2109 107 13 19 chr21 27696409 27696718 -7210852 - AluSq SINE Alu -6 307 1 2160 120 0 10 chr21 27697025 27697324 -7210246 - AluSx SINE Alu -16 296 1 264 244 81 38 chr21 27697475 27697635 -7209935 - L1MC4a LINE L1 -4579 1817 1651 427 269 24 15 chr21 27697648 27697836 -7209734 - L1MDa LINE L1 -866 2035 1790 229 128 26 51 chr21 27697836 27697914 -7209656 + CT-rich Low_complexity Low_complexity 1 76 0 802 127 0 63 chr21 27698062 27698204 -7209366 + FLAM_C SINE Alu 1 133 0 880 150 0 34 chr21 27698377 27698524 -7209046 - FLAM_C SINE Alu -1 142 1 705 299 92 49 chr21 27698524 27698900 -7208670 - L1MDa LINE L1 -5084 1446 1088 1540 175 130 11 chr21 27698900 27699254 -7208316 - MSTD LTR MaLR 0 396 1 705 299 92 49 chr21 27699254 27699613 -7207957 - L1MDa LINE L1 -5442 1088 679 183 320 40 13 chr21 27700162 27700237 -7207333 - MIR SINE MIR -183 79 3 2447 90 0 0 chr21 27700365 27700665 -7206905 + AluSx SINE Alu 1 300 -12 1998 142 7 0 chr21 27700739 27701028 -7206542 - AluJb SINE Alu -21 291 1 185 173 192 19 chr21 27702589 27702641 -7204929 - L2 LINE L2 -800 2514 2454 957 294 67 38 chr21 27702694 27703273 -7204297 - L2 LINE L2 -972 2342 1747 805 192 0 0 chr21 27704067 27704197 -7203373 - FLAM_A SINE Alu -3 130 1 340 328 61 26 chr21 27704197 27704426 -7203144 - L1ME LINE L1 -342 5779 5543 1126 162 47 0 chr21 27704629 27704863 -7202707 - L1MA8 LINE L1 -3 6288 6044 1516 249 44 56 chr21 27704994 27705839 -7201731 - HAL1 LINE L1 -851 1656 822 517 222 0 9 chr21 27705850 27705958 -7201612 + FLAM_A SINE Alu 1 107 -35 971 132 3 16 chr21 27705961 27706270 -7201300 + (TGG)n Simple_repeat Simple_repeat 3 306 0 431 289 52 6 chr21 27706276 27706449 -7201121 - HAL1 LINE L1 -1873 634 454 2131 211 8 10 chr21 27706930 27707428 -7200142 - L1MB7 LINE L1 0 6184 5688 509 342 0 7 chr21 27707472 27707627 -7199943 + MER5A DNA MER1_type 35 188 -1 725 191 8 0 chr21 27707946 27708077 -7199493 + FLAM_C SINE Alu 2 133 0 237 378 8 31 chr21 27708192 27708319 -7199251 - MIR3 SINE MIR -70 138 15 239 208 57 28 chr21 27708536 27708642 -7198928 + L1MC4 LINE L1 7135 7243 -799 420 312 56 37 chr21 27708691 27708906 -7198664 + L1MC4 LINE L1 7276 7494 -548 580 292 33 31 chr21 27708969 27709329 -7198241 + L1MC4 LINE L1 7492 7852 -190 2174 107 3 0 chr21 27709440 27709731 -7197839 - AluSx SINE Alu -20 292 1 23 0 0 0 chr21 27711189 27711212 -7196358 + AT_rich Low_complexity Low_complexity 1 23 0 342 342 34 7 chr21 27711380 27711529 -7196041 - MIR3 SINE MIR -4 204 52 891 206 24 80 chr21 27711822 27712442 -7195128 - LTR49-int LTR ERV1 -1042 3894 3330 2650 29 0 3 chr21 27712444 27712750 -7194820 - AluY SINE Alu -6 305 1 2156 125 16 7 chr21 27713476 27713779 -7193791 - AluSx SINE Alu -5 307 2 2055 141 0 13 chr21 27713903 27714209 -7193361 - AluJb SINE Alu -10 302 1 469 241 6 70 chr21 27714832 27714990 -7192580 - LTR49-int LTR ERV1 -1574 4757 4610 281 192 0 0 chr21 27716405 27716457 -7191113 + MER5B DNA MER1_type 1 52 -126 331 45 0 0 chr21 27716461 27716505 -7191065 - MADE1 DNA Mariner 0 80 37 191 227 23 0 chr21 27716555 27716599 -7190971 - MER5B DNA MER1_type -132 46 2 688 259 68 76 chr21 27717263 27717502 -7190068 - L1ME LINE L1 -3698 2382 2141 1760 151 38 14 chr21 27717502 27717794 -7189776 - AluJb SINE Alu -13 299 1 688 259 68 76 chr21 27717794 27717912 -7189658 - L1ME LINE L1 -3939 2141 2024 226 0 29 29 chr21 27717921 27717956 -7189614 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1735 106 4 16 chr21 27717970 27718215 -7189355 - AluSx SINE Alu -70 242 1 21 0 0 0 chr21 27718222 27718243 -7189327 + AT_rich Low_complexity Low_complexity 1 21 0 6050 138 13 12 chr21 27718851 27719206 -7188364 - L1PB1 LINE L1 -1 6150 5797 216 0 0 0 chr21 27719206 27719230 -7188340 + (TG)n Simple_repeat Simple_repeat 2 25 0 6050 138 13 12 chr21 27719230 27720807 -7186763 - L1PB1 LINE L1 -354 5797 4222 1828 253 53 33 chr21 27720779 27722177 -7185393 - L1ME LINE L1 -4320 1941 484 1642 193 17 24 chr21 27722248 27722543 -7185027 - AluJo SINE Alu -15 297 5 355 321 50 50 chr21 27722635 27722984 -7184586 + L1M4 LINE L1 3854 4202 -1944 2831 16 0 0 chr21 27722984 27723116 -7184454 + AluYb8 SINE Alu 1 311 -7 1609 28 0 0 chr21 27723116 27723295 -7184275 + AluYb8 SINE Alu 133 311 -7 367 302 61 49 chr21 27723296 27723789 -7183781 + L1MC/D LINE L1 4199 4697 -1449 245 250 20 26 chr21 27723876 27724028 -7183542 + (TA)n Simple_repeat Simple_repeat 2 152 0 361 234 69 75 chr21 27724203 27724391 -7183179 + L1MC/D LINE L1 5149 5335 -811 320 271 94 45 chr21 27724409 27724675 -7182895 + L1MC/D LINE L1 5291 5569 -2239 487 133 33 33 chr21 27725513 27725611 -7181959 + (TCTA)n Simple_repeat Simple_repeat 4 104 -49 2336 112 21 47 chr21 27725611 27725996 -7181574 - THE1C LTR MaLR 0 375 1 487 133 33 33 chr21 27725996 27726047 -7181523 + (TCTA)n Simple_repeat Simple_repeat 103 153 0 459 100 0 0 chr21 27726047 27726120 -7181450 + (TCCA)n Simple_repeat Simple_repeat 1 143 0 459 100 0 0 chr21 27726120 27726190 -7181380 + (TCCA)n Simple_repeat Simple_repeat 4 73 0 24 32 0 0 chr21 27728287 27728318 -7179252 + AT_rich Low_complexity Low_complexity 1 31 0 2142 122 10 0 chr21 27728657 27728945 -7178625 + AluSx SINE Alu 1 291 -21 399 198 88 0 chr21 27730003 27730094 -7177476 - L1MC4 LINE L1 -1 8041 7943 1734 157 75 0 chr21 27731597 27731878 -7175692 - AluJo SINE Alu -10 302 1 290 280 50 0 chr21 27731980 27732080 -7175490 - L2 LINE L2 -23 3290 3186 2198 109 0 7 chr21 27732246 27732540 -7175030 + AluSq SINE Alu 1 292 -21 201 292 135 42 chr21 27733104 27733193 -7174377 - L2 LINE L2 -431 2883 2804 2443 102 34 0 chr21 27733193 27733545 -7174025 - THE1B LTR MaLR 0 364 1 201 292 135 42 chr21 27733545 27733767 -7173803 - L2 LINE L2 -510 2804 2543 2317 89 4 0 chr21 27734095 27734398 -7173172 - AluSp SINE Alu 0 304 1 1394 172 109 15 chr21 27734419 27734686 -7172884 - AluJo SINE Alu -10 292 1 267 250 43 98 chr21 27734756 27734940 -7172630 + MIR3 SINE MIR 32 205 -3 2453 103 0 0 chr21 27736230 27736541 -7171029 - AluSx SINE Alu -1 311 1 2591 41 0 0 chr21 27736713 27737008 -7170562 - AluY SINE Alu -16 295 1 314 226 86 11 chr21 27737031 27737124 -7170446 - L1ME4a LINE L1 -22 6099 6000 516 134 0 25 chr21 27737128 27737247 -7170323 + (CA)n Simple_repeat Simple_repeat 2 117 0 342 0 0 0 chr21 27737676 27737714 -7169856 + (TA)n Simple_repeat Simple_repeat 1 38 0 465 114 56 30 chr21 27737873 27738331 -7169239 + (TG)n Simple_repeat Simple_repeat 1 469 0 1183 157 32 18 chr21 27739370 27739587 -7167983 + AluSg/x SINE Alu 90 309 -1 21 0 0 0 chr21 27739765 27739786 -7167784 + AT_rich Low_complexity Low_complexity 1 21 0 1971 150 20 3 chr21 27741128 27741428 -7166142 - AluJb SINE Alu -7 305 1 1946 101 0 0 chr21 27743455 27743702 -7163868 - AluSx SINE Alu -18 294 48 189 107 0 0 chr21 27744275 27744303 -7163267 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1906 145 30 0 chr21 27744530 27744826 -7162744 - AluSx SINE Alu -7 305 1 1692 159 25 4 chr21 27744859 27745160 -7162410 + AluJo SINE Alu 1 307 0 228 246 18 0 chr21 27746135 27746192 -7161378 - L2 LINE L2 -5 3267 3210 218 190 121 0 chr21 27746203 27746261 -7161309 - MIR SINE MIR -83 179 115 35 0 0 0 chr21 27747001 27747036 -7160534 + AT_rich Low_complexity Low_complexity 1 35 0 411 79 48 0 chr21 27747036 27747099 -7160471 - L1MA1 LINE L1 -7 6295 6230 3147 103 59 0 chr21 27747099 27747594 -7159976 - L1M1 LINE L1 -4624 2941 2418 5581 102 26 15 chr21 27747609 27748477 -7159093 - L1PB2 LINE L1 -2 6149 5272 6434 211 21 20 chr21 27748477 27751554 -7156016 - L1PBa LINE L1 -4630 2232 3 771 66 0 82 chr21 27751564 27751652 -7155918 - L1M1 LINE L1 -5132 2433 2356 2313 107 0 0 chr21 27751652 27751950 -7155620 + AluY SINE Alu 1 298 -13 771 66 0 82 chr21 27751950 27751983 -7155587 - L1M1 LINE L1 -5209 2356 2322 1059 188 68 5 chr21 27751981 27752173 -7155397 - L1M1 LINE L1 -6102 1463 1260 2069 106 21 0 chr21 27752832 27753116 -7154454 + AluSq SINE Alu 1 290 -23 37 17 0 34 chr21 27756868 27756901 -7150669 + AT_rich Low_complexity Low_complexity 1 33 -24 2133 139 0 0 chr21 27756901 27757189 -7150381 - AluSx SINE Alu -24 288 1 37 17 0 34 chr21 27757189 27757214 -7150356 + AT_rich Low_complexity Low_complexity 33 57 0 616 156 64 0 chr21 27757214 27757323 -7150247 - FLAM_C SINE Alu -27 116 1 1103 93 0 3 chr21 27757582 27757808 -7149762 + AluSx SINE Alu 2 297 -13 1041 227 44 23 chr21 27757808 27758151 -7149419 + MLT1C LTR MaLR 114 463 -4 2841 176 84 14 chr21 27758416 27758998 -7148572 + L1MB2 LINE L1 5443 6065 -106 1540 82 5 0 chr21 27759161 27759355 -7148215 + AluSg/x SINE Alu 110 304 -6 22 35 0 0 chr21 27759517 27759546 -7148024 + AT_rich Low_complexity Low_complexity 1 29 0 2485 60 7 7 chr21 27759873 27760175 -7147395 - AluSx SINE Alu -10 302 1 847 266 57 33 chr21 27760356 27760690 -7146880 - L1ME2 LINE L1 -9 6155 5814 331 141 32 90 chr21 27760695 27760851 -7146719 + T-rich Low_complexity Low_complexity 2 148 0 520 239 80 0 chr21 27760893 27761050 -7146520 - L1ME2 LINE L1 -386 5778 5601 491 316 13 51 chr21 27761142 27761254 -7146316 - MIR SINE MIR -10 252 152 1806 176 6 13 chr21 27761254 27761566 -7146004 - AluJo SINE Alu -2 310 1 491 316 13 51 chr21 27761566 27761687 -7145883 - MIR SINE MIR -110 152 28 1245 128 0 0 chr21 27761911 27762090 -7145480 + AluSg/x SINE Alu 132 310 0 5415 78 3 10 chr21 27762771 27763467 -7144103 - LTR8 LTR ERV1 0 691 1 1794 165 21 12 chr21 27763505 27763611 -7143959 + MER44D DNA MER2_type 2 106 -2385 1626 172 14 34 chr21 27763611 27763907 -7143663 + AluJo SINE Alu 5 294 -18 180 0 0 0 chr21 27763915 27763935 -7143635 + (GA)n Simple_repeat Simple_repeat 1 20 0 1794 165 21 12 chr21 27763935 27764146 -7143424 + MER44D DNA MER2_type 112 601 -8 923 165 13 76 chr21 27764258 27764482 -7143088 - MER34B LTR ERV1 0 565 356 262 210 0 16 chr21 27764688 27764750 -7142820 - MER34 LTR ERV1 -481 61 1 471 230 22 79 chr21 27764774 27764952 -7142618 + MIR SINE MIR 1 168 -94 4250 142 32 3 chr21 27764965 27765650 -7141920 - MER50 LTR ERV1 -23 711 7 2378 92 0 25 chr21 27766126 27766451 -7141119 - THE1A LTR MaLR -38 317 1 12265 85 4 3 chr21 27766461 27768034 -7139536 - THE1A-int LTR MaLR -6 1574 1 2799 79 3 0 chr21 27768034 27768388 -7139182 - THE1A LTR MaLR 0 355 1 2083 133 0 37 chr21 27768478 27768802 -7138768 - AluSx SINE Alu 0 312 1 2316 141 25 20 chr21 27769178 27769574 -7137996 - MER39B LTR ERV1 0 653 256 25 0 0 0 chr21 27769574 27769599 -7137971 + AT_rich Low_complexity Low_complexity 1 25 0 769 162 0 0 chr21 27769599 27769716 -7137854 - AluJb SINE Alu -194 118 2 854 149 49 0 chr21 27769719 27769935 -7137635 - MER39B LTR ERV1 -387 266 1 6752 163 38 35 chr21 27770057 27770112 -7137458 - MER39B-int LTR ERV1 -212 5938 5885 2380 91 3 0 chr21 27770112 27770409 -7137161 + AluSx SINE Alu 1 298 -14 6752 163 38 35 chr21 27770409 27770855 -7136715 - MER39B-int LTR ERV1 -265 5885 5442 2036 161 3 0 chr21 27770855 27771166 -7136404 + AluSx SINE Alu 1 312 0 6752 163 38 35 chr21 27771166 27771982 -7135588 - MER39B-int LTR ERV1 -708 5442 3495 2838 56 3 0 chr21 27771982 27772324 -7135246 + THE1A LTR MaLR 1 343 -12 2494 193 55 25 chr21 27772370 27772884 -7134686 - MER39B-int LTR ERV1 -3408 2923 2395 1305 130 36 22 chr21 27772884 27773107 -7134463 - MLT1A1 LTR MaLR -137 228 3 198 292 0 0 chr21 27773378 27773426 -7134144 - MIR SINE MIR -129 79 32 2446 107 107 20 chr21 27773628 27774022 -7133548 - MSTA LTR MaLR 0 428 1 431 321 56 28 chr21 27774065 27774280 -7133290 + L2 LINE L2 2837 3057 -215 576 271 79 35 chr21 27774983 27775186 -7132384 + L2 LINE L2 2873 3084 -229 471 223 0 0 chr21 27775200 27775294 -7132276 + AluJ/FRAM SINE Alu 218 311 -1 2902 178 25 21 chr21 27775312 27775731 -7131839 + L1MB7 LINE L1 5603 6026 -158 186 103 0 0 chr21 27775731 27775760 -7131810 + (TA)n Simple_repeat Simple_repeat 2 30 0 2902 178 25 21 chr21 27775760 27775912 -7131658 + L1MB7 LINE L1 6026 6176 -8 356 280 120 27 chr21 27775916 27776141 -7131429 + L2 LINE L2 3066 3311 -2 7635 62 5 3 chr21 27776250 27777410 -7130160 - L1PA8 LINE L1 0 6172 5012 792 201 7 0 chr21 27777657 27777801 -7129769 - MER74A LTR ERVL -27 531 387 1034 139 88 46 chr21 27777831 27777933 -7129637 - MER74A LTR ERVL -333 225 129 2491 164 57 7 chr21 27777933 27778372 -7129198 - LOR1b LTR ERV1 0 461 1 1034 139 88 46 chr21 27778372 27778485 -7129085 - MER74A LTR ERVL -429 129 1 411 222 0 0 chr21 27778692 27778764 -7128806 - MER45 DNA AcHobo -1 1580 1509 439 161 0 0 chr21 27778764 27778826 -7128744 + FRAM/FAM SINE Alu 1 61 -115 180 97 0 0 chr21 27779287 27779318 -7128252 + (CA)n Simple_repeat Simple_repeat 2 32 0 321 208 12 40 chr21 27780091 27780264 -7127306 + CT-rich Low_complexity Low_complexity 6 173 0 401 338 91 13 chr21 27780290 27780521 -7127049 - MIR SINE MIR -1 261 13 278 118 19 51 chr21 27780892 27780970 -7126600 + AluJb SINE Alu 73 133 -169 537 36 36 0 chr21 27780980 27781064 -7126506 + (TA)n Simple_repeat Simple_repeat 1 87 0 2472 69 0 28 chr21 27781188 27781508 -7126062 - AluY SINE Alu 0 311 1 1835 181 0 13 chr21 27781508 27781816 -7125754 - AluJb SINE Alu -8 304 1 7489 28 7 0 chr21 27782906 27783775 -7123795 - L1PA4 LINE L1 0 6155 5281 365 298 56 37 chr21 27784044 27784076 -7123494 + MIR SINE MIR 58 88 -174 2364 100 47 36 chr21 27784076 27784436 -7123134 + THE1B LTR MaLR 1 364 0 365 298 56 37 chr21 27784436 27784564 -7123006 + MIR SINE MIR 88 221 -41 4055 113 60 20 chr21 27784773 27785358 -7122212 - LTR9 LTR ERV1 0 612 5 205 221 29 59 chr21 27785800 27785868 -7121702 + MIR SINE MIR 41 106 -102 2732 107 25 67 chr21 27785870 27786317 -7121253 + MSTA LTR MaLR 1 428 0 224 172 35 0 chr21 27786775 27786833 -7120737 + CT-rich Low_complexity Low_complexity 1 60 0 932 259 96 41 chr21 27787367 27787803 -7119767 - MLT1C LTR MaLR 0 467 8 378 320 31 0 chr21 27788129 27788257 -7119313 + MIR SINE MIR 117 248 -14 289 267 89 39 chr21 27788429 27788609 -7118961 - LTR33 LTR ERVL -6 515 327 510 202 11 38 chr21 27789481 27789664 -7117906 + CT-rich Low_complexity Low_complexity 3 180 0 467 201 116 25 chr21 27790384 27790551 -7117019 - L1MC/D LINE L1 -623 5543 5382 308 358 44 41 chr21 27790815 27791178 -7116392 - L1MC/D LINE L1 -1050 5096 4733 1814 161 6 19 chr21 27791209 27791388 -7116182 - AluJb SINE Alu -5 307 132 519 60 0 0 chr21 27791388 27791455 -7116115 + (TG)n Simple_repeat Simple_repeat 2 68 0 1814 161 6 19 chr21 27791455 27791586 -7115984 - AluJb SINE Alu -180 132 1 2313 106 3 0 chr21 27791622 27791924 -7115646 - AluSx SINE Alu -9 303 1 375 359 53 8 chr21 27792270 27792535 -7115035 + L2 LINE L2 1 277 -3037 824 229 123 63 chr21 27792541 27792891 -7114679 + L2 LINE L2 439 809 -2505 1051 184 58 0 chr21 27792891 27793081 -7114489 - MER3 DNA MER1_type 0 209 9 2870 284 80 68 chr21 27793093 27794963 -7112607 + L2 LINE L2 800 2696 -618 2116 129 0 0 chr21 27794963 27795258 -7112312 - AluSx SINE Alu -14 298 4 2870 284 80 68 chr21 27795258 27795328 -7112242 + L2 LINE L2 2696 2764 -550 1515 161 0 4 chr21 27795853 27796089 -7111481 + AluJb SINE Alu 1 235 -77 1890 170 0 3 chr21 27796451 27796763 -7110807 - AluJb SINE Alu -1 311 1 309 293 90 0 chr21 27796925 27797058 -7110512 - L1MC/D LINE L1 -2032 4114 3970 351 0 0 0 chr21 27797336 27797375 -7110195 + (TG)n Simple_repeat Simple_repeat 2 40 0 34 0 0 0 chr21 27797944 27797978 -7109592 + AT_rich Low_complexity Low_complexity 1 34 0 576 274 60 48 chr21 27798135 27798383 -7109187 - LTR16A LTR ERVL -106 344 94 550 232 55 30 chr21 27798501 27798665 -7108905 - MER63A DNA MER1_type -4 206 39 1648 335 50 22 chr21 27799180 27799647 -7107923 - HERVL LTR ERVL -742 4912 4459 360 0 0 0 chr21 27799647 27799687 -7107883 + (TG)n Simple_repeat Simple_repeat 2 41 0 1648 335 50 22 chr21 27799687 27800156 -7107414 - HERVL LTR ERVL -1195 4459 3950 2118 171 3 32 chr21 27800852 27801227 -7106343 - MLT1A1 LTR MaLR 0 365 2 262 324 88 10 chr21 27801474 27801576 -7105994 - L2 LINE L2 -18 3254 3145 279 0 0 0 chr21 27801794 27801825 -7105745 + (CA)n Simple_repeat Simple_repeat 2 32 0 23 0 0 0 chr21 27801825 27801848 -7105722 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr21 27802331 27802353 -7105217 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1026 296 38 13 chr21 27802353 27802725 -7104845 + L1MEd LINE L1 318 698 -5674 636 288 80 51 chr21 27802729 27803177 -7104393 + L1MEd LINE L1 737 1197 -5175 695 259 26 42 chr21 27803243 27803622 -7103948 + HAL1b LINE L1 651 698 -886 798 288 5 5 chr21 27803657 27803869 -7103701 - MIR SINE MIR -44 218 7 1289 224 16 4 chr21 27804236 27804481 -7103089 - LTR10B LTR ERV1 0 547 300 598 286 87 13 chr21 27804780 27805011 -7102559 - MIR SINE MIR -8 254 7 2449 126 61 22 chr21 27805453 27805558 -7102012 + MSTA LTR MaLR 1 100 -328 3305 158 60 70 chr21 27805558 27806256 -7101314 + LTR8 LTR ERV1 1 691 0 2449 126 61 22 chr21 27806256 27806562 -7101008 + MSTA LTR MaLR 100 428 0 183 216 39 0 chr21 27806692 27806743 -7100827 - L2 LINE L2 0 3313 3261 2313 189 37 43 chr21 27807953 27808461 -7099109 + MLT1D LTR MaLR 1 505 0 1793 130 47 89 chr21 27808697 27809058 -7098512 + MER7A DNA MER2_type 3 346 0 1620 0 0 0 chr21 27809830 27810128 -7097442 + (TTCCC)n Simple_repeat Simple_repeat 1 298 0 2256 83 7 3 chr21 27810133 27810422 -7097148 - AluSc SINE Alu -19 290 1 4833 153 11 0 chr21 27810954 27812174 -7095396 + L1MA5 LINE L1 4558 5789 -514 180 111 0 0 chr21 27812186 27812213 -7095357 + (TA)n Simple_repeat Simple_repeat 1 27 0 2847 161 21 6 chr21 27812219 27812736 -7094834 + L1MA5 LINE L1 5776 6300 0 2204 112 6 13 chr21 27812846 27813158 -7094412 - AluSg SINE Alu 0 310 1 1242 257 48 63 chr21 27813620 27814188 -7093382 + L1ME LINE L1 465 1023 -5047 1581 174 40 101 chr21 27814192 27814432 -7093138 - MLT1A2 LTR MaLR -2 372 164 1089 167 6 0 chr21 27814432 27814606 -7092964 - L1PB4 LINE L1 -12 6144 5970 1581 174 40 101 chr21 27814606 27814761 -7092809 - MLT1A2 LTR MaLR -210 164 1 2972 236 56 50 chr21 27814761 27815337 -7092233 + L1ME LINE L1 1018 1589 -4491 2261 107 0 28 chr21 27815337 27815655 -7091915 + AluSc SINE Alu 1 309 0 2972 236 56 50 chr21 27815655 27817097 -7090473 + L1ME LINE L1 1589 3054 -3026 2087 226 5 83 chr21 27817105 27817174 -7090396 + L1M4 LINE L1 4639 4712 -1434 1614 140 110 4 chr21 27817174 27817446 -7090124 + AluJb SINE Alu 1 301 -11 2087 226 5 83 chr21 27817446 27817597 -7089973 + L1M4 LINE L1 4712 4873 -1273 2794 72 35 16 chr21 27817597 27817973 -7089597 - L1PA13 LINE L1 0 6163 5781 2087 226 5 83 chr21 27817973 27818425 -7089145 + L1M4 LINE L1 4873 5259 -887 1290 188 114 3 chr21 27818477 27818782 -7088788 + L1PB1 LINE L1 5267 5598 -568 1863 158 0 30 chr21 27818812 27819109 -7088461 - AluJb SINE Alu -24 288 1 1583 186 43 0 chr21 27819330 27819609 -7087961 - AluJo SINE Alu -21 291 1 835 148 15 0 chr21 27820246 27820381 -7087189 + L1PB1 LINE L1 6014 6150 -1 1785 173 74 23 chr21 27820756 27820978 -7086592 + MLT2D LTR ERVL 1 210 -204 217 97 0 0 chr21 27820978 27821009 -7086561 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 1837 142 0 10 chr21 27821009 27821297 -7086273 - AluJo SINE Alu -27 285 1 1785 173 74 23 chr21 27821297 27821467 -7086103 + MLT2D LTR ERVL 209 414 0 1501 210 36 46 chr21 27822090 27822480 -7085090 + MLT1B LTR MaLR 1 386 -4 1924 146 3 0 chr21 27822729 27823024 -7084546 + AluSx SINE Alu 1 296 -16 2339 112 35 19 chr21 27823107 27823474 -7084096 - THE1C LTR MaLR 0 375 3 1845 250 87 28 chr21 27823483 27824078 -7083492 + MLT1E2 LTR MaLR 1 586 -7 224 263 0 88 chr21 27824390 27824504 -7083066 - L2 LINE L2 -10 3303 3200 373 236 27 27 chr21 27824881 27824991 -7082579 - MER93b LTR ERV1 -133 240 131 736 191 29 0 chr21 27825211 27825347 -7082223 + MLT1B LTR MaLR 251 390 0 198 304 43 0 chr21 27825942 27826011 -7081559 + L2 LINE L2 3201 3272 0 294 215 103 19 chr21 27828922 27829029 -7078541 - MER103 DNA DNA -1 165 50 1779 167 0 7 chr21 27829580 27829885 -7077685 + AluJb SINE Alu 1 303 -9 559 240 104 0 chr21 27830001 27830126 -7077444 + MIR SINE MIR 93 230 -32 197 62 0 31 chr21 27830132 27830164 -7077406 + (TAA)n Simple_repeat Simple_repeat 1 31 0 2219 81 0 0 chr21 27830287 27830299 -7077271 - AluY SINE Alu -14 297 286 234 0 0 0 chr21 27830299 27830325 -7077245 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 2219 81 0 0 chr21 27830325 27830609 -7076961 - AluY SINE Alu -24 287 1 193 322 0 0 chr21 27830806 27830865 -7076705 - MIR SINE MIR -8 254 196 1429 164 10 44 chr21 27831610 27831908 -7075662 - AluJo SINE Alu -4 308 21 622 168 106 9 chr21 27832611 27832724 -7074846 + FLAM_C SINE Alu 3 126 -7 283 146 0 0 chr21 27832736 27832777 -7074793 + FLAM SINE Alu 82 122 -11 2015 124 14 0 chr21 27832795 27833085 -7074485 - AluSx SINE Alu -18 294 1 731 165 0 0 chr21 27833085 27833206 -7074364 - FLAM_A SINE Alu -12 130 10 303 294 24 12 chr21 27833567 27833652 -7073918 - L2 LINE L2 -1 3271 3186 2137 100 0 3 chr21 27833717 27834017 -7073553 + AluSx SINE Alu 2 300 -12 214 218 254 0 chr21 27834098 27834153 -7073417 - MIR SINE MIR -76 186 118 300 318 107 22 chr21 27835673 27835991 -7071579 - L2 LINE L2 -115 3198 2854 943 181 78 29 chr21 27836177 27836381 -7071189 + MER20 DNA MER1_type 6 219 0 260 217 0 43 chr21 27836839 27836908 -7070662 + L2 LINE L2 2912 2977 -336 412 204 23 23 chr21 27838058 27838146 -7069424 - MER5B DNA MER1_type -90 88 1 353 316 0 0 chr21 27838322 27838420 -7069150 + MIR SINE MIR 78 175 -87 29 60 0 0 chr21 27838819 27838869 -7068701 + GC_rich Low_complexity Low_complexity 1 50 0 43 88 0 0 chr21 27839083 27839196 -7068374 + GC_rich Low_complexity Low_complexity 1 113 0 294 194 0 0 chr21 27839671 27839733 -7067837 + (TG)n Simple_repeat Simple_repeat 2 63 0 22 0 0 0 chr21 27840353 27840375 -7067195 + AT_rich Low_complexity Low_complexity 1 22 0 919 234 12 39 chr21 27841596 27841852 -7065718 + MIR SINE MIR 13 261 -1 535 150 0 0 chr21 27842126 27842206 -7065364 + FLAM SINE Alu 50 129 -14 27 29 0 0 chr21 27842824 27842858 -7064712 + AT_rich Low_complexity Low_complexity 1 34 0 1844 134 78 33 chr21 27843310 27843669 -7063901 - THE1C LTR MaLR 0 375 1 1172 79 211 0 chr21 27843680 27843870 -7063700 - MER30 DNA MER1_type 0 230 1 1327 156 4 67 chr21 27843906 27844176 -7063394 + AluJo SINE Alu 40 292 -20 751 252 74 51 chr21 27844255 27845027 -7062543 - L1ME LINE L1 -456 5950 5161 1505 193 101 25 chr21 27845128 27845486 -7062084 - MLT1B LTR MaLR -5 385 1 301 280 35 21 chr21 27845654 27845797 -7061773 - L1ME LINE L1 -1305 5077 4933 1886 113 12 55 chr21 27845807 27846133 -7061437 - AluSx SINE Alu 0 312 1 1117 229 78 0 chr21 27846133 27846417 -7061153 - L1MC4 LINE L1 -287 7755 7450 388 279 91 7 chr21 27846517 27846671 -7060899 + MLT1I LTR MaLR 44 210 -199 312 171 134 0 chr21 27846788 27846870 -7060700 + MLT1I LTR MaLR 317 409 0 513 314 40 36 chr21 27846872 27846994 -7060576 - L1ME LINE L1 -1922 4460 4340 814 195 0 0 chr21 27846994 27847122 -7060448 + FLAM_C SINE Alu 1 128 -5 513 314 40 36 chr21 27847122 27847251 -7060319 - L1ME LINE L1 -2042 4340 4208 500 285 75 81 chr21 27847504 27847851 -7059719 - L1ME LINE L1 -2579 3803 3459 330 233 95 37 chr21 27848033 27848222 -7059348 - L1ME LINE L1 -3136 3246 3047 404 321 84 30 chr21 27848614 27848910 -7058660 - L1ME LINE L1 -3885 2499 2188 225 0 0 0 chr21 27849058 27849083 -7058487 + (TTTTC)n Simple_repeat Simple_repeat 1 25 0 240 143 0 0 chr21 27849084 27849126 -7058444 + (TTCC)n Simple_repeat Simple_repeat 2 43 0 892 158 6 6 chr21 27849127 27849304 -7058266 + CT-rich Low_complexity Low_complexity 4 180 0 437 346 47 33 chr21 27849430 27849641 -7057929 - HAL1 LINE L1 -742 1765 1552 331 314 88 20 chr21 27849728 27849932 -7057638 - HAL1 LINE L1 -1060 1447 1230 471 203 45 30 chr21 27851551 27851684 -7055886 - MER103 DNA DNA -10 156 22 4415 179 29 18 chr21 27851933 27852818 -7054752 - L1MB3 LINE L1 -1 6182 5288 310 274 60 8 chr21 27853387 27853504 -7054066 + MIR SINE MIR 125 247 -15 200 122 73 0 chr21 27853703 27853744 -7053826 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 307 306 31 10 chr21 27854147 27854245 -7053325 + L1M4 LINE L1 1151 1250 -5292 786 229 67 33 chr21 27854265 27854475 -7053095 - L1PB4 LINE L1 0 6156 5940 2081 108 0 10 chr21 27855030 27855326 -7052244 - AluSx SINE Alu -19 293 1 2660 166 9 0 chr21 27857140 27857603 -7049967 - MLT1C LTR MaLR 0 467 1 281 333 105 17 chr21 27857637 27857931 -7049639 - L2 LINE L2 0 3313 2994 378 234 98 11 chr21 27860013 27860223 -7047347 + MER112 DNA MER1_type 1 249 -11 2168 107 0 3 chr21 27861491 27861791 -7045779 - AluSp SINE Alu -14 299 1 482 276 67 0 chr21 27862115 27862249 -7045321 + MIR SINE MIR 91 233 -29 4495 111 44 58 chr21 27864124 27864899 -7042671 + LTR1 LTR ERV1 22 785 0 1277 68 11 0 chr21 27865300 27865476 -7042094 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2215 94 7 0 chr21 27865490 27865789 -7041781 - AluSg SINE Alu -9 301 1 374 270 18 9 chr21 27866105 27866216 -7041354 - MIR SINE MIR -111 151 40 401 209 78 35 chr21 27866719 27866759 -7040811 - L1M4 LINE L1 -1938 4208 4171 1720 155 27 17 chr21 27866759 27867056 -7040514 - AluJo SINE Alu -12 300 1 401 209 78 35 chr21 27867056 27867130 -7040440 - L1M4 LINE L1 -1975 4171 4089 27 0 0 0 chr21 27867365 27867392 -7040178 + AT_rich Low_complexity Low_complexity 1 27 0 1558 151 0 51 chr21 27868765 27869076 -7038494 + AluJo SINE Alu 1 295 -17 1184 121 0 0 chr21 27869283 27869456 -7038114 + AluSg/x SINE Alu 135 307 -3 481 168 215 40 chr21 27869944 27870093 -7037477 - MER4C LTR ERV1 0 465 291 2109 128 3 68 chr21 27870147 27870529 -7037041 - MER4A LTR ERV1 -307 357 1 1801 174 0 0 chr21 27872830 27873140 -7034430 + AluJb SINE Alu 1 310 -2 1020 157 5 51 chr21 27873462 27873659 -7033911 - AluJb SINE Alu -124 188 1 1248 233 50 14 chr21 27874702 27875063 -7032507 + MLT1A2 LTR MaLR 1 374 0 971 184 80 53 chr21 27875478 27875969 -7031601 - MER31A LTR ERV1 -1 660 24 264 120 200 0 chr21 27876260 27876310 -7031260 + MLT1C LTR MaLR 22 81 -386 23 68 0 0 chr21 27876836 27876880 -7030690 + AT_rich Low_complexity Low_complexity 1 44 0 386 181 0 0 chr21 27877159 27877231 -7030339 + Charlie4a DNA MER1_type 63 134 -374 1790 210 64 5 chr21 27877232 27877655 -7029915 - MLT1C LTR MaLR 0 467 20 935 253 65 42 chr21 27877664 27878000 -7029570 + Charlie4a DNA MER1_type 140 483 -25 28 29 0 0 chr21 27878936 27878971 -7028599 + AT_rich Low_complexity Low_complexity 1 35 0 1242 223 79 3 chr21 27878974 27879307 -7028263 - L1ME3 LINE L1 -12 6150 5793 927 188 27 5 chr21 27879349 27879535 -7028035 + LTR41 LTR ERVL 8 197 -576 1079 268 41 15 chr21 27879567 27879907 -7027663 + LTR41 LTR ERVL 347 695 -78 737 225 62 38 chr21 27879979 27880219 -7027351 - L1ME3 LINE L1 -400 5762 5517 1017 146 49 0 chr21 27880219 27880383 -7027187 - AluSx SINE Alu -130 182 11 3946 148 19 3 chr21 27880393 27881028 -7026542 + Tigger1 DNA MER2_type 1774 2418 0 1026 226 29 58 chr21 27881028 27881337 -7026233 - MLT2B1 LTR ERVL -51 469 170 450 99 0 86 chr21 27881591 27881672 -7025898 - MER69 DNA AcHobo 0 2526 2453 234 231 19 0 chr21 27881676 27881728 -7025842 - MER69 DNA AcHobo -2471 55 3 382 255 128 43 chr21 27882060 27882201 -7025369 - MER5A DNA MER1_type -18 171 19 3016 167 31 8 chr21 27883164 27883686 -7023884 + MLT2B3 LTR ERVL 1 534 -20 234 174 0 0 chr21 27883688 27883734 -7023836 + (CCTA)n Simple_repeat Simple_repeat 2 47 0 317 172 0 31 chr21 27883750 27883814 -7023756 + MLT2C2 LTR ERVL 403 464 0 370 163 0 23 chr21 27884593 27884679 -7022891 + GA-rich Low_complexity Low_complexity 1 84 0 1537 170 7 31 chr21 27884971 27885260 -7022310 + AluJo SINE Alu 1 282 -30 264 237 13 40 chr21 27885595 27885671 -7021899 - MIR SINE MIR -112 150 77 191 198 135 62 chr21 27886228 27886324 -7021246 - MIR3 SINE MIR -2 206 104 320 295 24 60 chr21 27887760 27887926 -7019644 - MIR SINE MIR -90 172 13 261 57 0 0 chr21 27889450 27889485 -7018085 + (TCCCC)n Simple_repeat Simple_repeat 1 35 0 693 176 54 27 chr21 27889485 27889633 -7017937 - FRAM SINE Alu -8 168 17 449 294 19 38 chr21 27889683 27889843 -7017727 - MIR3 SINE MIR -11 197 41 406 330 11 38 chr21 27890017 27890202 -7017368 - MIR SINE MIR -37 225 46 1762 272 109 50 chr21 27890284 27892011 -7015559 + L2 LINE L2 1431 3313 0 1876 137 38 0 chr21 27892312 27892605 -7014965 - AluSx SINE Alu -8 304 1 288 319 44 30 chr21 27892919 27893054 -7014516 + L2 LINE L2 2624 2760 -554 556 267 55 51 chr21 27893859 27894076 -7013494 + MIR SINE MIR 44 261 -1 1002 236 26 21 chr21 27894154 27894387 -7013183 + L1M3e LINE L1 1183 1416 -5614 678 270 88 14 chr21 27894742 27894957 -7012613 + MIR SINE MIR 31 261 -1 346 272 48 95 chr21 27895239 27895386 -7012184 - MIR3 SINE MIR -15 193 54 230 224 47 84 chr21 27895647 27895754 -7011816 - MIR SINE MIR -71 191 89 225 0 0 0 chr21 27896223 27896248 -7011322 + (TG)n Simple_repeat Simple_repeat 2 26 0 1076 171 41 6 chr21 27896917 27897270 -7010300 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr21 27897293 27897315 -7010255 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr21 27897982 27898013 -7009557 + AT_rich Low_complexity Low_complexity 1 31 0 26 64 0 0 chr21 27898557 27898604 -7008966 + AT_rich Low_complexity Low_complexity 1 47 0 1276 184 12 16 chr21 27900080 27900335 -7007235 - MLT1B LTR MaLR -55 335 82 205 300 0 0 chr21 27900523 27900573 -7006997 + L2 LINE L2 2339 2388 -926 233 350 106 28 chr21 27900697 27901017 -7006553 + L2 LINE L2 2560 2904 -410 1865 195 19 0 chr21 27901088 27901452 -7006118 - MLT1B LTR MaLR -19 371 1 217 309 88 52 chr21 27901558 27901694 -7005876 + L2 LINE L2 3132 3272 0 2281 89 3 0 chr21 27902753 27903056 -7004514 + AluSx SINE Alu 1 304 -8 199 216 39 0 chr21 27903146 27903197 -7004373 - MIR SINE MIR -141 121 69 2080 122 0 0 chr21 27903494 27903790 -7003780 - AluSx SINE Alu -6 306 11 872 218 31 61 chr21 27904028 27904257 -7003313 + MLT1A1 LTR MaLR 1 222 -143 813 241 83 18 chr21 27904594 27904822 -7002748 - MLT1E LTR MaLR 0 593 351 1297 242 20 40 chr21 27904914 27905261 -7002309 - MLT2C1 LTR ERVL -57 340 1 327 299 123 28 chr21 27905261 27905515 -7002055 - MLT1E3 LTR MaLR -221 403 68 561 30 0 0 chr21 27905820 27905887 -7001683 + (GA)n Simple_repeat Simple_repeat 1 67 0 882 66 79 21 chr21 27905948 27906277 -7001293 + (TCTA)n Simple_repeat Simple_repeat 1 348 0 4268 123 73 7 chr21 27906321 27906862 -7000708 + Tigger3b DNA MER2_type 1 607 -2421 2084 78 0 0 chr21 27906862 27907133 -7000437 + AluY SINE Alu 38 308 -3 4268 123 73 7 chr21 27907133 27907344 -7000226 + Tigger3b DNA MER2_type 607 803 -428 476 182 57 0 chr21 27907339 27907427 -7000143 + Tigger3b DNA MER2_type 1138 1230 -1 301 276 118 59 chr21 27907576 27907746 -6999824 + L1MC4a LINE L1 6058 6237 -1571 645 312 51 68 chr21 27907788 27908372 -6999198 + L1MC4a LINE L1 6293 6866 -942 1521 192 0 7 chr21 27908435 27908745 -6998825 + AluJb SINE Alu 6 313 0 441 198 0 12 chr21 27908911 27908992 -6998578 + MER58A DNA MER1_type 1 80 -27 21 0 0 0 chr21 27909150 27909171 -6998399 + AT_rich Low_complexity Low_complexity 1 21 0 464 76 0 0 chr21 27909171 27909237 -6998333 - L1MA3 LINE L1 0 6305 6240 2012 226 57 76 chr21 27909238 27909422 -6998148 + L1MC5 LINE L1 7103 7289 -672 2321 102 51 23 chr21 27909422 27909776 -6997794 - THE1B LTR MaLR 0 364 1 2012 226 57 76 chr21 27909776 27910405 -6997165 + L1MC5 LINE L1 7289 7900 -61 1887 196 54 52 chr21 27910405 27910542 -6997028 - MLT1D LTR MaLR 0 505 370 1513 188 131 8 chr21 27910542 27910894 -6996676 - MSTD LTR MaLR 0 396 2 1887 196 54 52 chr21 27910894 27911260 -6996310 - MLT1D LTR MaLR -135 370 1 191 345 41 64 chr21 27911678 27911849 -6995721 - MIR SINE MIR -62 200 34 330 259 42 49 chr21 27912120 27912305 -6995265 + MLT1J2 LTR MaLR 24 205 -204 281 244 0 23 chr21 27913463 27913549 -6994021 + MLT1I LTR MaLR 324 407 -2 633 259 81 0 chr21 27913831 27914005 -6993565 - HAL1 LINE L1 -135 2372 2185 626 271 64 20 chr21 27914310 27914513 -6993057 - HAL1 LINE L1 -735 1772 1561 3187 135 8 2 chr21 27915307 27915812 -6991758 - L1MA4A LINE L1 -4 6299 5792 324 0 0 0 chr21 27915812 27915848 -6991722 + (TA)n Simple_repeat Simple_repeat 1 36 0 1180 50 19 19 chr21 27915958 27916279 -6991291 + (TCTA)n Simple_repeat Simple_repeat 1 321 0 874 198 29 0 chr21 27916477 27916649 -6990921 - MER5B DNA MER1_type -1 177 1 5239 141 32 13 chr21 27916785 27917675 -6989895 - L1MC1 LINE L1 -6 6327 5422 4088 121 5 31 chr21 27917680 27917773 -6989797 - L1PA15 LINE L1 -6 6159 6065 2113 63 80 31 chr21 27917773 27918060 -6989510 + AluSg SINE Alu 1 301 -9 4088 121 5 31 chr21 27918060 27918620 -6988950 - L1PA15 LINE L1 -100 6065 5523 871 299 65 10 chr21 27918959 27919373 -6988197 - L1ME3 LINE L1 -325 6231 5795 374 317 12 0 chr21 27919440 27919601 -6987969 - L1ME3 LINE L1 -3039 3501 3339 884 286 76 16 chr21 27919748 27920212 -6987358 - L1ME3 LINE L1 -3632 2908 2418 318 241 31 20 chr21 27920540 27920648 -6986922 - L1ME3 LINE L1 -4358 2183 1798 228 304 89 6 chr21 27920826 27920984 -6986586 - L1ME3 LINE L1 -5326 1204 1034 929 202 56 0 chr21 27921550 27921748 -6985822 + MER3 DNA MER1_type 1 209 0 33 43 0 0 chr21 27921921 27921968 -6985602 + AT_rich Low_complexity Low_complexity 1 47 0 772 182 0 0 chr21 27921973 27922099 -6985471 - FRAM SINE Alu -22 154 29 2284 112 0 10 chr21 27923562 27923874 -6983696 - AluSg SINE Alu -1 309 1 556 244 77 45 chr21 27924083 27924304 -6983266 + L1ME3A LINE L1 5785 6012 -158 1801 158 10 7 chr21 27925028 27925320 -6982250 + AluJb SINE Alu 1 293 -19 1651 199 8 20 chr21 27925424 27925780 -6981790 - MLT1A1 LTR MaLR -7 358 7 339 216 196 27 chr21 27926042 27926190 -6981380 - MER5B DNA MER1_type -1 177 5 748 117 44 73 chr21 27926613 27926750 -6980820 - FLAM_C SINE Alu 0 133 1 512 213 63 16 chr21 27926822 27926949 -6980621 + MER105 DNA DNA 54 186 -18 1217 143 11 0 chr21 27926949 27927138 -6980432 - AluSg/x SINE Alu -12 298 108 230 196 20 20 chr21 27927341 27927392 -6980178 + MLT1L LTR MaLR 211 261 -354 240 111 0 0 chr21 27927626 27927662 -6979908 + (A)n Simple_repeat Simple_repeat 1 36 0 573 214 71 19 chr21 27927950 27928104 -6979466 + MER63A DNA MER1_type 49 210 0 2052 128 9 50 chr21 27929152 27929167 -6978403 + MSTD LTR MaLR 3 17 -379 2187 127 140 8 chr21 27929167 27929545 -6978025 + MSTA LTR MaLR 1 428 0 2052 128 9 50 chr21 27929545 27929872 -6977698 + MSTD LTR MaLR 17 331 -65 5722 50 3 0 chr21 27929923 27930621 -6976949 - L1PA7 LINE L1 0 6154 5455 3128 87 48 0 chr21 27930623 27931162 -6976408 + L1P3 LINE L1 704 1307 -5154 377 176 14 0 chr21 27931162 27931246 -6976324 + MSTB2 LTR MaLR 301 446 -11 964 230 49 11 chr21 27931509 27931774 -6975796 + L1ME2 LINE L1 5667 5941 -223 180 0 0 0 chr21 27931836 27931856 -6975714 + (A)n Simple_repeat Simple_repeat 1 20 0 441 148 0 25 chr21 27932284 27932365 -6975205 - L1P4 LINE L1 -443 5723 5645 304 143 0 0 chr21 27932354 27932403 -6975167 + L1PA16 LINE L1 5939 5987 -179 4516 136 16 14 chr21 27932446 27933154 -6974416 - MER50 LTR ERV1 -23 711 3 926 87 47 0 chr21 27933154 27933281 -6974289 - MER50-int LTR ERV1 -4 7201 7069 2583 133 64 16 chr21 27933281 27933732 -6973838 - LTR8A LTR ERV1 -254 473 1 966 129 74 0 chr21 27933732 27933895 -6973675 + L1PA16 LINE L1 5983 6157 -9 495 312 29 21 chr21 27933908 27934148 -6973422 + MIR SINE MIR 20 261 -1 31 0 0 0 chr21 27934238 27934269 -6973301 + AT_rich Low_complexity Low_complexity 1 31 0 725 93 0 0 chr21 27935534 27935631 -6971939 - MER41B LTR ERV1 0 635 539 2947 84 2 0 chr21 27935631 27936025 -6971545 - MER41A LTR ERV1 -159 395 1 383 294 74 12 chr21 27936411 27936574 -6970996 - MIR SINE MIR -31 231 59 870 281 29 18 chr21 27936773 27937051 -6970519 - LTR16A LTR ERVL -7 443 163 2247 96 3 7 chr21 27937548 27937840 -6969730 - AluSc SINE Alu -14 295 5 1117 329 56 17 chr21 27938124 27939113 -6968457 - HERV16 LTR ERVL -1003 4761 3639 1472 313 51 17 chr21 27939549 27940474 -6967096 - HERV16 LTR ERVL -1908 3088 2153 1919 187 80 16 chr21 27940474 27940912 -6966658 - MLT1C LTR MaLR 0 467 2 1472 313 51 17 chr21 27940912 27941014 -6966556 - HERV16 LTR ERVL -2843 2153 2056 348 112 0 50 chr21 27941019 27941099 -6966471 + (TTTC)n Simple_repeat Simple_repeat 4 79 0 1948 168 0 3 chr21 27941121 27941430 -6966140 - AluJb SINE Alu -4 308 1 11292 171 6 4 chr21 27942350 27945153 -6962417 - L1PA14 LINE L1 0 6161 3359 714 180 0 0 chr21 27945171 27945299 -6962271 - FLAM_A SINE Alu -1 141 14 382 221 107 46 chr21 27945301 27945432 -6962138 + L2 LINE L2 3175 3313 0 719 127 0 63 chr21 27945992 27946062 -6961508 - L1MC3 LINE L1 0 7785 7727 1948 137 0 111 chr21 27946062 27946441 -6961129 - MER1B DNA MER1_type 0 337 1 719 127 0 63 chr21 27946441 27946512 -6961058 - L1MC3 LINE L1 -58 7727 7653 1979 161 25 18 chr21 27946512 27946909 -6960661 + L1MC3 LINE L1 7379 7778 -7 257 246 84 42 chr21 27947228 27947370 -6960200 + MIR SINE MIR 83 230 -32 1067 193 65 35 chr21 27947391 27947681 -6959889 - MLT2C1 LTR ERVL -95 302 4 540 158 0 0 chr21 27947685 27947799 -6959771 + CT-rich Low_complexity Low_complexity 1 114 0 192 77 0 0 chr21 27947801 27947827 -6959743 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 421 233 125 0 chr21 27948364 27948484 -6959086 + MLT1I LTR MaLR 72 206 -203 369 263 102 0 chr21 27948537 27948655 -6958915 + MLT1I LTR MaLR 280 409 0 380 285 41 0 chr21 27948732 27948855 -6958715 + L2 LINE L2 3095 3222 -91 203 224 20 0 chr21 27948944 27948993 -6958577 - MIR SINE MIR -76 186 137 1795 239 102 29 chr21 27949031 27949578 -6957992 - MLT1E LTR MaLR 0 593 7 566 162 0 3 chr21 27949880 27950148 -6957422 + AluSx SINE Alu 1 346 0 2288 96 53 31 chr21 27950379 27950735 -6956835 + THE1B LTR MaLR 1 364 0 235 152 43 0 chr21 27950829 27950875 -6956695 + MLT1J LTR MaLR 319 366 -145 1222 331 35 32 chr21 27952641 27953361 -6954209 + ERVL LTR ERVL 4308 5029 -735 1859 196 56 14 chr21 27954157 27954588 -6952982 + MLT1C LTR MaLR 1 358 -16 321 250 147 0 chr21 27954817 27954953 -6952617 - MIR SINE MIR -12 250 95 454 232 148 52 chr21 27955059 27955477 -6952093 - MLT1J LTR MaLR 0 511 24 1102 204 44 101 chr21 27955994 27956489 -6951081 - MLT1C LTR MaLR 0 467 1 1008 235 59 28 chr21 27957500 27957921 -6949649 + MLT1E2 LTR MaLR 138 624 -2 1122 241 108 26 chr21 27957921 27958285 -6949285 + MLT1G1 LTR MaLR 93 568 -27 2138 136 0 13 chr21 27958759 27959075 -6948495 + AluJb SINE Alu 1 312 0 470 252 36 91 chr21 27959151 27959425 -6948145 + L1ME4a LINE L1 5684 5942 -179 748 237 56 67 chr21 27959602 27959872 -6947698 - MLT1C LTR MaLR -2 465 199 929 170 71 38 chr21 27959872 27960084 -6947486 - MLT1C LTR MaLR -243 224 6 2361 98 0 0 chr21 27960158 27960454 -6947116 + AluSg SINE Alu 1 296 -14 324 0 0 0 chr21 27960455 27960491 -6947079 + (CA)n Simple_repeat Simple_repeat 2 37 0 669 167 27 53 chr21 27960499 27960672 -6946898 - L1MC1 LINE L1 -269 6064 5894 2080 145 0 10 chr21 27960886 27961182 -6946388 - AluSx SINE Alu -19 293 1 350 260 68 7 chr21 27961590 27961736 -6945834 - LTR37B LTR ERV1 0 468 314 225 0 0 0 chr21 27962448 27962473 -6945097 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 408 18 0 35 chr21 27962529 27962586 -6944984 + L1PA6 LINE L1 6097 6151 -3 1704 191 80 74 chr21 27963223 27963725 -6943845 - MER21B LTR ERV1 -14 849 345 1243 170 51 42 chr21 27963726 27964061 -6943509 - MER21A LTR ERV1 -545 386 12 2065 145 14 22 chr21 27964125 27964483 -6943087 - THE1A LTR MaLR 0 355 1 239 176 0 0 chr21 27964494 27964545 -6943025 - LTR48 LTR ERV1 -48 739 689 1815 118 0 121 chr21 27964907 27965245 -6942325 - AluSq SINE Alu -6 297 1 2497 67 15 30 chr21 27965279 27965610 -6941960 - LTR17 LTR ERV1 -454 326 1 2380 67 3 3 chr21 27965610 27965908 -6941662 - HERV17 LTR ERV1 0 8626 8329 49873 49 7 4 chr21 27965918 27971923 -6935647 - HERV17 LTR ERV1 -2610 6016 1 3905 56 42 31 chr21 27971923 27972441 -6935129 - LTR17 LTR ERV1 0 780 257 409 245 0 20 chr21 27972450 27972548 -6935022 - MER34 LTR ERV1 -446 96 1 222 196 0 36 chr21 27972797 27972853 -6934717 + (TTA)n Simple_repeat Simple_repeat 2 55 0 2007 133 32 6 chr21 27973097 27973443 -6934127 - THE1A LTR MaLR 0 355 1 1256 214 50 84 chr21 27974094 27974324 -6933246 - MLT1A2 LTR MaLR -2 372 159 2058 110 0 0 chr21 27974324 27974596 -6932974 - AluSg SINE Alu 0 310 39 1256 214 50 84 chr21 27974596 27974748 -6932822 - MLT1A2 LTR MaLR -215 159 3 2367 100 0 0 chr21 27975247 27975546 -6932024 - AluSx SINE Alu -13 299 1 4156 89 30 83 chr21 27975546 27976222 -6931348 - MER4A LTR ERV1 -24 640 1 1120 151 0 0 chr21 27976396 27976562 -6931008 + FRAM SINE Alu 2 167 -9 478 154 0 0 chr21 27977704 27977782 -6929788 - L1PB4 LINE L1 -7 6149 6072 6108 134 25 6 chr21 27978066 27979484 -6928086 - L1PB2 LINE L1 -7 6144 4698 2788 212 13 33 chr21 27979473 27980389 -6927181 - L1 LINE L1 -3460 2686 1783 2490 74 0 3 chr21 27981340 27981639 -6925931 + AluY SINE Alu 1 298 -13 2021 86 60 11 chr21 27981857 27982161 -6925409 + AluSx SINE Alu 1 317 0 284 233 116 8 chr21 27983000 27983129 -6924441 + L2 LINE L2 2830 2972 -300 272 330 34 8 chr21 27983239 27983357 -6924213 + L2 LINE L2 3107 3227 -86 612 192 19 51 chr21 27983490 27983612 -6923958 - MER5A DNA MER1_type 0 189 72 2275 107 13 0 chr21 27983612 27983910 -6923660 - AluSx SINE Alu -8 304 3 612 192 19 51 chr21 27983910 27983943 -6923627 - MER5A DNA MER1_type -117 72 39 458 266 0 9 chr21 27984912 27985021 -6922549 - L1ME3A LINE L1 -10 6160 6053 305 202 45 34 chr21 27985036 27985125 -6922445 - L1ME3A LINE L1 -157 6013 5924 254 315 74 0 chr21 27985174 27985282 -6922288 - MER112 DNA MER1_type -64 196 81 2236 110 0 3 chr21 27985620 27985920 -6921650 + AluY SINE Alu 1 299 -12 345 360 22 7 chr21 27986248 27986384 -6921186 - L2 LINE L2 -1 3271 3134 2286 93 0 3 chr21 27986614 27986905 -6920665 - AluSc SINE Alu -19 290 1 3274 187 17 22 chr21 27986985 27987688 -6919882 + L1M LINE L1 4685 5379 -786 1711 205 3 0 chr21 27987700 27988003 -6919567 - AluJo SINE Alu -8 304 1 3335 143 141 29 chr21 27988208 27988908 -6918662 - MER4E LTR ERV1 0 779 1 2130 115 3 0 chr21 27990388 27990675 -6916895 - AluSx SINE Alu -24 288 1 1267 189 73 55 chr21 27990996 27991340 -6916230 - MLT1C LTR MaLR -112 355 6 259 273 15 0 chr21 27992054 27992120 -6915450 + CT-rich Low_complexity Low_complexity 4 70 0 275 272 12 12 chr21 27992199 27992280 -6915290 + CT-rich Low_complexity Low_complexity 2 82 0 332 310 47 6 chr21 27993420 27993639 -6913931 + MIR SINE MIR 2 262 0 607 208 14 56 chr21 27994901 27995045 -6912525 + Charlie1 DNA MER1_type 16 153 -2608 2878 171 89 9 chr21 27995049 27995229 -6912341 + Charlie1 DNA MER1_type 2080 2244 -517 2036 125 30 0 chr21 27995229 27995533 -6912037 + AluSq SINE Alu 1 313 0 2878 171 89 9 chr21 27995533 27995984 -6911586 + Charlie1 DNA MER1_type 2244 2761 0 229 381 36 22 chr21 27995984 27996123 -6911447 - MIR3 SINE MIR -48 160 20 210 71 0 0 chr21 27996866 27996894 -6910676 + (A)n Simple_repeat Simple_repeat 1 28 0 306 241 35 0 chr21 27997924 27998011 -6909559 - MIR SINE MIR -65 143 54 333 321 58 16 chr21 27998129 27998319 -6909251 - MIR SINE MIR -1 261 64 1184 168 91 0 chr21 27998429 27998661 -6908909 - MLT1C LTR MaLR -10 457 205 1426 261 83 63 chr21 27998662 27999016 -6908554 - L1MC4 LINE L1 -450 7592 7246 2442 109 0 0 chr21 27999016 27999355 -6908215 - L1PA13 LINE L1 -11 6152 5814 1426 261 83 63 chr21 27999355 27999760 -6907810 - L1MC4 LINE L1 -796 7246 6818 267 240 43 53 chr21 28000890 28000992 -6906578 + MIR SINE MIR 58 155 -59 197 281 52 67 chr21 28001012 28001147 -6906423 - MER5A DNA MER1_type -21 168 36 461 175 10 19 chr21 28001234 28001337 -6906233 + MIR SINE MIR 25 126 -136 215 214 36 0 chr21 28002209 28002265 -6905305 + (TA)n Simple_repeat Simple_repeat 2 59 0 185 289 22 33 chr21 28003410 28003500 -6904070 - MER5A DNA MER1_type -83 106 18 493 135 22 22 chr21 28004258 28004347 -6903223 + MER3 DNA MER1_type 81 122 -87 225 234 0 0 chr21 28005263 28005327 -6902243 + (CTG)n Simple_repeat Simple_repeat 1 64 0 4281 166 11 4 chr21 28005475 28006220 -6901350 + L1MA7 LINE L1 5528 6277 -14 229 265 0 48 chr21 28007024 28007107 -6900463 - MIR SINE MIR 0 262 184 3064 209 25 34 chr21 28007211 28007918 -6899652 - L1MC4 LINE L1 -1846 5962 5262 619 295 43 62 chr21 28007947 28008320 -6899250 - L1MC4 LINE L1 -1076 5070 4705 1647 132 46 4 chr21 28008382 28008662 -6898908 - L1MB3 LINE L1 -7 6176 5885 5661 152 23 28 chr21 28008663 28010122 -6897448 - L1MA5 LINE L1 -44 6256 4803 1301 47 0 23 chr21 28011072 28011243 -6896327 - L1PA4 LINE L1 0 6155 5989 741 34 0 0 chr21 28011243 28011331 -6896239 + L1P LINE L1 5034 5121 -1025 5062 27 0 0 chr21 28011326 28011916 -6895654 - L1PA3 LINE L1 -1227 4919 4330 7788 27 6 0 chr21 28011916 28013152 -6894418 + L1PA3 LINE L1 4915 6155 0 368 23 0 0 chr21 28013153 28013197 -6894373 + L1P LINE L1 5110 5153 -993 180 0 0 0 chr21 28013588 28013608 -6893962 + (T)n Simple_repeat Simple_repeat 1 20 0 215 252 70 52 chr21 28013715 28013830 -6893740 + MIR SINE MIR 132 248 -14 22 0 0 0 chr21 28015622 28015644 -6891926 + AT_rich Low_complexity Low_complexity 1 22 0 1278 255 78 75 chr21 28015992 28016414 -6891156 - L1ME3A LINE L1 -31 6139 5720 1714 171 7 13 chr21 28016414 28016723 -6890847 + AluJb SINE Alu 1 307 -5 1278 255 78 75 chr21 28016723 28016800 -6890770 - L1ME3A LINE L1 -450 5720 5645 1476 175 106 31 chr21 28016800 28017120 -6890450 - MER2 DNA MER2_type 0 344 1 1278 255 78 75 chr21 28017120 28017234 -6890336 - L1ME3A LINE L1 -525 5645 5523 1146 225 0 67 chr21 28017524 28017764 -6889806 - MER58A DNA MER1_type 0 224 1 1514 67 0 0 chr21 28018393 28018573 -6888997 + L1PA5 LINE L1 5970 6149 -5 729 285 25 8 chr21 28020199 28020434 -6887136 - L2 LINE L2 -833 2481 2243 2293 110 0 0 chr21 28023257 28023558 -6884012 - AluSx SINE Alu -11 301 1 1698 174 3 17 chr21 28023566 28023860 -6883710 - AluJo SINE Alu -22 290 1 451 243 101 7 chr21 28025384 28025532 -6882038 + MER5A DNA MER1_type 1 162 -27 2519 127 34 6 chr21 28028736 28029090 -6878480 - THE1B LTR MaLR 0 364 1 932 194 71 10 chr21 28030108 28030304 -6877266 - MER3 DNA MER1_type 0 209 2 1845 139 38 7 chr21 28030955 28031243 -6876327 + AluSx SINE Alu 1 297 -15 3588 129 87 31 chr21 28031967 28032314 -6875256 - MER39B LTR ERV1 0 653 327 5623 43 0 0 chr21 28032314 28032945 -6874625 - L1PA5 LINE L1 0 6154 5524 3588 129 87 31 chr21 28032945 28033215 -6874355 - MER39B LTR ERV1 -326 327 1 402 21 0 0 chr21 28033359 28033406 -6874164 + (CA)n Simple_repeat Simple_repeat 1 47 0 1421 121 52 9 chr21 28033965 28034197 -6873373 + MSTB-int LTR MaLR 1410 1651 0 2428 156 23 44 chr21 28034197 28034632 -6872938 + MSTB LTR MaLR 1 426 0 362 250 20 0 chr21 28034703 28034803 -6872767 + (TG)n Simple_repeat Simple_repeat 1 102 0 232 233 11 33 chr21 28034809 28034989 -6872581 + (TATG)n Simple_repeat Simple_repeat 3 178 0 306 242 13 6 chr21 28034977 28035134 -6872436 + (TG)n Simple_repeat Simple_repeat 1 158 0 1793 204 27 6 chr21 28035176 28035510 -6872060 + MER58B DNA MER1_type 1 341 0 2356 101 3 0 chr21 28035735 28036041 -6871529 + AluSq SINE Alu 1 307 -6 387 231 56 46 chr21 28036254 28036362 -6871208 + MLT2E LTR ERVL 520 628 0 180 97 0 0 chr21 28036829 28036860 -6870710 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 282 222 48 0 chr21 28036963 28037026 -6870544 + MIR SINE MIR 76 141 -67 352 305 23 23 chr21 28037144 28037321 -6870249 + MER20B DNA MER1_type 182 358 -426 485 202 112 63 chr21 28037542 28037765 -6869805 + MER20B DNA MER1_type 527 760 -24 474 268 78 22 chr21 28038131 28038310 -6869260 + L1MCc LINE L1 18 206 -6217 2434 158 59 5 chr21 28038674 28039078 -6868492 - MSTB LTR MaLR 0 426 1 402 256 0 0 chr21 28039214 28039300 -6868270 + MER34 LTR ERV1 11 96 -446 296 232 113 42 chr21 28039602 28039744 -6867826 + MER34 LTR ERV1 384 535 -7 797 276 73 42 chr21 28039754 28040050 -6867520 + L1MCc LINE L1 847 1157 -5266 2087 136 84 27 chr21 28040050 28040419 -6867151 - MLT1B LTR MaLR 0 390 1 797 276 73 42 chr21 28040419 28040480 -6867090 + L1MCc LINE L1 1157 1215 -5208 1525 238 18 27 chr21 28040754 28041126 -6866444 + MLT1A2 LTR MaLR 1 464 -3 1032 208 50 92 chr21 28042248 28042488 -6865082 - MSTD LTR MaLR 0 396 196 862 204 93 35 chr21 28042497 28042723 -6864847 - MSTD LTR MaLR -157 239 1 1569 99 0 5 chr21 28043210 28043421 -6864149 + THE1B LTR MaLR 1 210 -154 984 336 66 16 chr21 28045067 28045508 -6862062 + L2 LINE L2 73 535 -2779 1817 205 29 79 chr21 28045531 28045567 -6862003 - MLT2B1 LTR ERVL -4 516 480 1109 20 26 0 chr21 28045567 28045719 -6861851 + (TCTA)n Simple_repeat Simple_repeat 4 159 0 1817 205 29 79 chr21 28045719 28046164 -6861406 - MLT2B1 LTR ERVL -40 480 59 317 155 0 43 chr21 28046211 28046284 -6861286 - MLT2D LTR ERVL -353 61 2 309 264 31 62 chr21 28046501 28046630 -6860940 - LTR68 LTR ERV1 -286 454 330 329 296 47 59 chr21 28046786 28046872 -6860698 - LTR68 LTR ERV1 -567 173 88 2243 89 0 10 chr21 28046872 28047174 -6860396 - AluY SINE Alu -11 300 2 329 296 47 59 chr21 28047174 28047256 -6860314 - LTR68 LTR ERV1 -652 88 7 1076 284 114 53 chr21 28047284 28047968 -6859602 + L2 LINE L2 641 1366 -1948 352 307 36 7 chr21 28048155 28048295 -6859275 - MLT1I LTR MaLR -263 146 3 2780 283 116 41 chr21 28048297 28049361 -6858209 + L2 LINE L2 1379 2361 -952 2247 236 112 16 chr21 28049361 28049932 -6857638 + MLT1E2 LTR MaLR 1 626 0 2780 283 116 41 chr21 28049932 28050022 -6857548 + L2 LINE L2 2361 2443 -870 432 0 0 0 chr21 28050022 28050070 -6857500 + (TTTA)n Simple_repeat Simple_repeat 3 50 0 1932 150 0 0 chr21 28050072 28050352 -6857218 - AluSx SINE Alu -32 280 1 2780 283 116 41 chr21 28050352 28050990 -6856580 + L2 LINE L2 2443 3309 -4 205 225 225 0 chr21 28051889 28051960 -6855610 - L2 LINE L2 -17 3255 3169 430 250 72 22 chr21 28051947 28052127 -6855443 + L2 LINE L2 1809 1997 -1317 2333 148 8 0 chr21 28052137 28052503 -6855067 - L1PB1 LINE L1 0 6867 6499 187 75 0 50 chr21 28052504 28052544 -6855026 + (TA)n Simple_repeat Simple_repeat 1 38 0 3932 145 11 4 chr21 28052567 28053592 -6853978 - L1PB1 LINE L1 -360 6507 5472 2910 187 20 3 chr21 28053584 28054221 -6853349 - L1 LINE L1 -1295 4851 4204 10315 193 10 26 chr21 28054222 28056561 -6851009 - L1PB1 LINE L1 -1799 5063 2765 239 100 100 0 chr21 28056567 28056607 -6850963 - L1PB1 LINE L1 -4251 2612 2569 1506 121 34 0 chr21 28056602 28056867 -6850703 - L1PB1 LINE L1 -4743 2120 1847 936 313 55 24 chr21 28057105 28057803 -6849767 + L2 LINE L2 2275 3052 -261 429 290 23 8 chr21 28057812 28057943 -6849627 - MIR SINE MIR -129 133 1 1671 193 72 28 chr21 28058690 28059121 -6848449 + MLT1C LTR MaLR 18 467 0 724 282 8 23 chr21 28059414 28059680 -6847890 - L1MC4a LINE L1 -1866 5942 5681 4758 162 28 22 chr21 28059875 28060609 -6846961 - L1MB3 LINE L1 -4 6179 5436 1505 204 63 14 chr21 28060609 28060802 -6846768 - MLT1A1 LTR MaLR 0 365 146 549 55 0 0 chr21 28060802 28060875 -6846695 + (GA)n Simple_repeat Simple_repeat 1 73 0 1505 204 63 14 chr21 28060875 28061029 -6846541 - MLT1A1 LTR MaLR -219 146 1 4758 162 28 22 chr21 28061029 28061213 -6846357 - L1MB3 LINE L1 -747 5436 5255 241 279 135 0 chr21 28061984 28062088 -6845482 - MER117 DNA MER1_type -49 148 31 217 285 100 100 chr21 28062639 28062839 -6844731 - L2 LINE L2 0 3272 3073 21 36 0 0 chr21 28063391 28063419 -6844151 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr21 28064609 28064636 -6842934 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 1195 256 92 78 chr21 28064735 28065515 -6842055 + L1MC4 LINE L1 7245 8035 -7 1222 176 5 0 chr21 28068064 28068274 -6839296 - AluJb SINE Alu -15 297 87 447 214 202 117 chr21 28068284 28068625 -6838945 - L1MC4a LINE L1 -1862 5946 5577 213 284 15 0 chr21 28069742 28069809 -6837761 + GA-rich Low_complexity Low_complexity 4 71 0 1440 158 147 8 chr21 28070057 28070322 -6837248 + AluJo SINE Alu 1 302 0 2119 130 0 9 chr21 28070683 28070998 -6836572 + AluSq SINE Alu 1 312 -1 215 103 0 0 chr21 28073331 28073360 -6834210 - MIR SINE MIR -11 251 223 184 182 0 91 chr21 28073360 28073375 -6834195 - L2 LINE L2 -17 3255 3216 252 229 57 0 chr21 28073377 28073447 -6834123 + MER116 DNA Mariner 7 80 0 187 224 20 41 chr21 28073624 28073673 -6833897 + MIR3 SINE MIR 112 159 -49 599 120 9 0 chr21 28075535 28075643 -6831927 + (TG)n Simple_repeat Simple_repeat 1 109 0 962 201 35 26 chr21 28075831 28076060 -6831510 + MLT1D LTR MaLR 20 250 -255 506 239 0 0 chr21 28076130 28076239 -6831331 + MLT1D LTR MaLR 397 505 0 358 235 25 0 chr21 28078125 28078198 -6829372 + MER67A LTR ERV1 6 80 -463 1289 228 105 25 chr21 28078198 28078705 -6828865 + MER67B LTR ERV1 1 418 -243 586 179 19 0 chr21 28078795 28078901 -6828669 + MER67A LTR ERV1 432 539 -4 1921 153 0 6 chr21 28079843 28080157 -6827413 - AluJb SINE Alu 0 312 1 357 183 16 8 chr21 28081520 28081604 -6825966 - Alu SINE Alu -2 300 245 401 275 97 32 chr21 28081621 28081868 -6825702 - L1MEc LINE L1 -5478 918 656 707 264 71 48 chr21 28081908 28082177 -6825393 - L1MEc LINE L1 -5805 591 317 1100 275 26 0 chr21 28083059 28083328 -6824242 - HERV16 LTR ERVL -3055 1941 1666 738 165 9 178 chr21 28083370 28083451 -6824119 - MER20 DNA MER1_type 0 219 126 2412 110 41 8 chr21 28083451 28083814 -6823756 - THE1C LTR MaLR 0 375 1 10560 122 31 5 chr21 28083816 28085353 -6822217 - THE1C-int LTR MaLR -2 1578 1 2409 110 44 14 chr21 28085353 28085717 -6821853 - THE1C LTR MaLR 0 375 1 738 165 9 178 chr21 28085717 28085861 -6821709 - MER20 DNA MER1_type -92 127 29 761 306 65 13 chr21 28085919 28086229 -6821341 - HERV16 LTR ERVL -3420 1576 1251 1535 208 80 6 chr21 28087880 28088241 -6819329 - MLT1B LTR MaLR -1 389 2 248 224 0 0 chr21 28088869 28088918 -6818652 + GA-rich Low_complexity Low_complexity 2 50 0 189 355 18 78 chr21 28089360 28089526 -6818044 - L2 LINE L2 0 3313 3158 209 360 18 18 chr21 28090340 28090454 -6817116 - MIR SINE MIR -121 141 28 2167 165 13 10 chr21 28091144 28091532 -6816038 - MLT1B LTR MaLR 0 390 2 21 36 0 0 chr21 28092180 28092208 -6815362 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr21 28092226 28092249 -6815321 + AT_rich Low_complexity Low_complexity 1 23 0 344 94 0 62 chr21 28093264 28093328 -6814242 - FAM SINE Alu -1 174 120 646 303 41 14 chr21 28094696 28094914 -6812656 - MIR SINE MIR 0 262 39 203 310 0 0 chr21 28094970 28095028 -6812542 + GA-rich Low_complexity Low_complexity 2 59 0 2117 116 0 0 chr21 28098100 28098401 -6809169 - AluSx SINE Alu -11 301 1 43 47 0 0 chr21 28099506 28099570 -6808000 + AT_rich Low_complexity Low_complexity 1 64 0 384 182 172 10 chr21 28100884 28100983 -6806587 - Tigger7 DNA MER2_type 0 2491 2377 1250 193 58 27 chr21 28100966 28101225 -6806345 - Tigger7 DNA MER2_type -2220 267 1 25 31 0 0 chr21 28102187 28102219 -6805351 + AT_rich Low_complexity Low_complexity 1 32 0 1718 185 19 0 chr21 28102219 28102543 -6805027 - L1MB2 LINE L1 -10 6161 5832 593 246 34 34 chr21 28102560 28102735 -6804835 - Charlie7 DNA MER1_type -2214 398 224 351 341 39 0 chr21 28102849 28102978 -6804592 - MER91C DNA MER1_type -6 134 1 1890 135 0 31 chr21 28103511 28103829 -6803741 + AluJb SINE Alu 5 312 0 1977 138 3 3 chr21 28105080 28105392 -6802178 - AluSq SINE Alu -1 312 1 672 221 41 6 chr21 28105923 28106095 -6801475 - MER45A DNA AcHobo 0 178 1 355 287 23 0 chr21 28106203 28106290 -6801280 - L1MC4 LINE L1 -1340 6702 6614 351 212 0 0 chr21 28106530 28106615 -6800955 + (TG)n Simple_repeat Simple_repeat 2 86 0 347 270 7 61 chr21 28107982 28108130 -6799440 + MIR SINE MIR 37 176 -86 578 280 45 0 chr21 28110023 28110180 -6797390 - MIR SINE MIR -66 196 33 480 262 66 66 chr21 28110202 28110280 -6797290 - L1ME1 LINE L1 -5 6161 6084 2163 106 3 0 chr21 28110280 28110581 -6796989 - AluSp SINE Alu -11 302 1 480 262 66 66 chr21 28110581 28110617 -6796953 - L1ME1 LINE L1 -82 6084 6049 2015 112 3 3 chr21 28110617 28110903 -6796667 + AluSx SINE Alu 1 286 -26 228 35 0 0 chr21 28110903 28110932 -6796638 + (GA)n Simple_repeat Simple_repeat 2 30 0 480 262 66 66 chr21 28110932 28110998 -6796572 - L1ME1 LINE L1 -115 6051 5979 1392 192 31 78 chr21 28111954 28112313 -6795257 - MLT1B LTR MaLR -43 347 6 1289 111 6 0 chr21 28112539 28112719 -6794851 + AluSq SINE Alu 115 295 -18 180 97 0 0 chr21 28113440 28113471 -6794099 + (T)n Simple_repeat Simple_repeat 1 31 0 2466 65 0 0 chr21 28115510 28115817 -6791753 - AluY SINE Alu -4 307 1 1973 104 7 42 chr21 28116460 28116768 -6790802 - AluSq SINE Alu -14 299 3 839 162 7 0 chr21 28116770 28116918 -6790652 - MER96B DNA MER1_type? -254 163 15 2969 178 38 50 chr21 28117583 28118546 -6789024 - LTR13 LTR ERVK 0 1007 4 1995 79 29 0 chr21 28118670 28118947 -6788623 - L1MA1 LINE L1 0 6302 6018 1366 114 0 15 chr21 28118947 28119148 -6788422 + L1MA1 LINE L1 5803 6000 -302 996 165 0 7 chr21 28121088 28121357 -6786213 + (TCCA)n Simple_repeat Simple_repeat 1 443 0 574 254 42 57 chr21 28121620 28121813 -6785757 + MIR SINE MIR 8 197 -65 440 259 49 66 chr21 28123069 28123209 -6784361 + MIR3 SINE MIR 11 147 -61 2292 77 7 0 chr21 28123209 28123506 -6784064 + AluSg SINE Alu 1 299 -11 440 259 49 66 chr21 28123506 28123544 -6784026 + MIR3 SINE MIR 147 184 -24 2257 101 0 0 chr21 28123866 28124172 -6783398 + AluY SINE Alu 1 306 -5 542 195 0 34 chr21 28126133 28126145 -6781425 - Charlie1b DNA MER1_type -2240 521 510 2238 89 0 0 chr21 28126145 28126436 -6781134 - AluSq SINE Alu -22 291 1 542 195 0 34 chr21 28126436 28126541 -6781029 - Charlie1b DNA MER1_type -2251 510 408 2371 157 25 29 chr21 28126567 28126975 -6780595 - LTR32 LTR ERVL -53 418 13 1394 170 33 49 chr21 28126980 28127309 -6780261 - Charlie1b DNA MER1_type -105 418 95 2574 42 0 0 chr21 28129688 28129998 -6777572 + AluY SINE Alu 1 310 -1 2245 70 0 7 chr21 28131868 28132155 -6775415 + AluY SINE Alu 1 285 -26 408 181 0 26 chr21 28132635 28132751 -6774819 + CT-rich Low_complexity Low_complexity 3 115 0 1930 101 0 4 chr21 28133643 28133910 -6773660 + AluSx SINE Alu 29 294 -18 2092 74 0 0 chr21 28135888 28136159 -6771411 - AluSp SINE Alu -4 309 39 1533 153 19 0 chr21 28138811 28139073 -6768497 - AluJo SINE Alu -11 301 35 2065 89 46 23 chr21 28140400 28140703 -6766867 + AluSx SINE Alu 1 310 -2 4278 87 61 2 chr21 28142626 28143213 -6764357 + L1PA11 LINE L1 5553 6174 0 2074 168 21 18 chr21 28143862 28144250 -6763320 + MLT1B LTR MaLR 2 390 0 648 101 49 27 chr21 28145735 28146535 -6761035 + (TG)n Simple_repeat Simple_repeat 1 817 0 214 73 49 0 chr21 28146559 28146600 -6760970 + (TG)n Simple_repeat Simple_repeat 2 44 0 907 168 14 1 chr21 28147803 28147967 -6759603 + MLT1B LTR MaLR 194 389 -1 903 119 0 0 chr21 28148135 28148253 -6759317 - FLAM_C SINE Alu -15 118 1 505 252 70 9 chr21 28149275 28149504 -6758066 - MER57A LTR ERV1 -2 401 137 299 266 22 11 chr21 28150408 28150501 -6757069 - MIR SINE MIR -61 147 53 1269 150 70 57 chr21 28150636 28150936 -6756634 - AluJo SINE Alu -8 304 1 369 301 55 33 chr21 28151511 28151694 -6755876 - L2 LINE L2 -7 3306 3120 992 67 22 28 chr21 28153315 28153494 -6754076 + (TCTA)n Simple_repeat Simple_repeat 3 180 0 843 103 0 0 chr21 28154147 28154263 -6753307 - L1PB1 LINE L1 -1 6150 6035 273 122 0 0 chr21 28154265 28154306 -6753264 + 5S rRNA rRNA 2 42 -79 263 304 62 22 chr21 28158853 28159080 -6748490 - L1M4 LINE L1 -1677 4469 4234 1713 192 25 25 chr21 28159542 28159738 -6747832 - MLT1A2 LTR MaLR -15 359 161 2243 112 0 3 chr21 28159738 28160041 -6747529 - AluSx SINE Alu -10 302 1 1713 192 25 25 chr21 28160041 28160203 -6747367 - MLT1A2 LTR MaLR -212 162 1 1543 156 0 0 chr21 28162633 28162858 -6744712 - AluSq SINE Alu -88 225 1 1043 118 0 0 chr21 28162858 28162993 -6744577 - AluSq/x SINE Alu -178 135 1 408 278 107 32 chr21 28163184 28163371 -6744199 - MIR SINE MIR -6 256 56 1904 184 119 14 chr21 28163581 28164010 -6743560 + MLT1D LTR MaLR 5 478 -27 227 330 70 17 chr21 28164977 28165092 -6742478 - MIR3 SINE MIR -3 205 85 959 306 44 3 chr21 28165843 28166183 -6741387 + LTR16C LTR ERVL 138 491 0 464 253 39 19 chr21 28168268 28168422 -6739148 - MLT1J2 LTR MaLR -15 435 279 1796 189 52 58 chr21 28168480 28168945 -6738625 - MLT1C LTR MaLR 0 467 6 424 250 73 18 chr21 28168962 28169126 -6738444 - MLT1J1 LTR MaLR -272 174 2 477 308 48 13 chr21 28169130 28169357 -6738213 - MIR SINE MIR -8 254 20 298 214 0 62 chr21 28170167 28170279 -6737291 + GA-rich Low_complexity Low_complexity 1 105 0 1791 199 31 17 chr21 28171310 28171662 -6735908 + MLT1A1 LTR MaLR 9 365 0 360 247 21 0 chr21 28171745 28171842 -6735728 + MLT1J1 LTR MaLR 346 444 -2 660 258 26 34 chr21 28173334 28173567 -6734003 - HAL1 LINE L1 -36 2471 2241 912 263 131 46 chr21 28173609 28174153 -6733417 - HAL1 LINE L1 -352 2155 1566 2531 224 67 11 chr21 28174180 28174823 -6732747 - L1ME1 LINE L1 -5 6161 5483 1234 267 62 34 chr21 28174817 28175498 -6732072 - HAL1 LINE L1 -936 1571 872 762 184 24 65 chr21 28175500 28175668 -6731902 + MER20 DNA MER1_type 2 162 -57 2259 166 36 31 chr21 28175668 28176216 -6731354 + MLT2A2 LTR ERVL 1 554 0 298 224 0 0 chr21 28176221 28176279 -6731291 + MER20 DNA MER1_type 162 219 0 291 238 24 0 chr21 28176624 28176708 -6730862 - HAL1 LINE L1 -2109 398 313 195 286 0 0 chr21 28176855 28176904 -6730666 + L2 LINE L2 1372 1420 -1894 1534 232 49 25 chr21 28177626 28178068 -6729502 + MER74B LTR ERVL 56 529 -93 180 0 0 0 chr21 28178302 28178322 -6729248 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 389 299 123 13 chr21 28178553 28178707 -6728863 + MER5B DNA MER1_type 5 175 -3 1044 159 28 11 chr21 28178776 28178958 -6728612 - MER5A DNA MER1_type -4 185 1 378 240 0 0 chr21 28179023 28179098 -6728472 - MER81 DNA DNA -36 78 4 1367 206 120 77 chr21 28179098 28179365 -6728205 + MLT1D LTR MaLR 25 322 -183 4915 78 19 18 chr21 28179365 28179930 -6727640 - PABL_B LTR ERV1 0 667 99 2327 117 0 0 chr21 28179930 28180237 -6727333 - AluSg SINE Alu -3 307 1 4915 78 19 18 chr21 28180237 28180337 -6727233 - PABL_B LTR ERV1 -568 99 1 1367 206 120 77 chr21 28180337 28180529 -6727041 + MLT1D LTR MaLR 322 504 -1 1325 194 7 41 chr21 28181454 28181798 -6725772 - AluJo SINE Alu 0 334 1 603 240 93 0 chr21 28182024 28182174 -6725396 - MER95 LTR ERV -267 164 1 1024 230 21 21 chr21 28182179 28182609 -6724961 - L1MA9 LINE L1 -38 6274 5810 203 192 39 19 chr21 28182883 28182935 -6724635 + L2 LINE L2 3217 3269 -3 2252 92 0 0 chr21 28184618 28184890 -6722680 - AluSp SINE Alu -19 294 23 2098 134 3 0 chr21 28185759 28186058 -6721512 - AluSx SINE Alu -12 300 1 612 248 71 59 chr21 28186408 28186912 -6720658 - L1MEd LINE L1 -4908 1297 821 1904 249 40 22 chr21 28187207 28187762 -6719808 - MLT1F1 LTR MaLR 0 567 3 2147 141 0 10 chr21 28188430 28188777 -6718793 - AluJb SINE Alu 0 344 1 859 229 48 19 chr21 28189491 28189701 -6717869 + MER20 DNA MER1_type 1 216 -3 193 292 0 0 chr21 28189752 28189800 -6717770 + L2 LINE L2 3223 3270 -2 265 256 134 0 chr21 28190597 28190679 -6716891 - MARNA DNA Mariner -180 406 314 258 116 0 0 chr21 28191656 28191699 -6715871 + (CA)n Simple_repeat Simple_repeat 1 43 0 27 0 0 0 chr21 28191806 28191833 -6715737 + AT_rich Low_complexity Low_complexity 1 27 0 2464 108 8 30 chr21 28192268 28192640 -6714930 - THE1B LTR MaLR 0 364 1 318 111 0 0 chr21 28193269 28193314 -6714256 - MLT2C2 LTR ERVL -2 513 469 1929 186 31 45 chr21 28193389 28193809 -6713761 - MLT2C2 LTR ERVL -50 414 1 1853 151 57 26 chr21 28194503 28194853 -6712717 - MLT1A1 LTR MaLR 0 365 5 195 62 31 0 chr21 28195390 28195422 -6712148 + L2 LINE L2 3281 3313 0 1622 161 98 19 chr21 28196146 28196524 -6711046 + LOR1b LTR ERV1 3 461 0 265 202 9 123 chr21 28197049 28197163 -6710407 - MIR SINE MIR -44 218 118 1909 169 0 7 chr21 28197341 28197649 -6709921 + AluJo SINE Alu 1 306 -6 405 0 0 0 chr21 28199898 28199943 -6707627 + (TG)n Simple_repeat Simple_repeat 1 45 0 647 304 69 8 chr21 28200272 28200532 -6707038 - MLT1C LTR MaLR -1 466 191 572 232 98 12 chr21 28201485 28201649 -6705921 - MLT1C LTR MaLR -308 197 20 462 231 19 44 chr21 28202587 28202747 -6704823 + L2 LINE L2 3158 3313 0 1726 154 8 0 chr21 28202847 28203113 -6704457 - AluJb SINE Alu -3 309 42 2559 179 55 2 chr21 28203118 28203610 -6703960 - LTR53 LTR ERVL -1 518 1 293 302 101 8 chr21 28203658 28203787 -6703783 + MIR SINE MIR 72 212 -50 1986 121 43 0 chr21 28203792 28204072 -6703498 + AluSc SINE Alu 1 292 -17 244 235 0 0 chr21 28204197 28204248 -6703322 + MIR SINE MIR 102 152 -110 190 212 0 0 chr21 28206237 28206270 -6701300 + L2 LINE L2 3214 3246 -26 225 234 188 0 chr21 28208471 28208535 -6699035 + L2 LINE L2 3231 3306 -7 527 259 57 69 chr21 28209666 28209998 -6697572 + LTR58 LTR ERV1 350 677 -2 333 100 0 0 chr21 28210129 28210179 -6697391 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 291 114 0 0 chr21 28210220 28210264 -6697306 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 248 91 23 0 chr21 28211100 28211144 -6696426 + (TG)n Simple_repeat Simple_repeat 1 45 0 381 338 77 34 chr21 28211262 28211496 -6696074 - MIR SINE MIR -1 261 18 442 119 25 17 chr21 28211869 28211987 -6695583 + (CA)n Simple_repeat Simple_repeat 1 119 0 329 138 41 28 chr21 28212012 28212157 -6695413 + (CA)n Simple_repeat Simple_repeat 1 147 0 237 127 55 27 chr21 28212168 28212278 -6695292 + (CA)n Simple_repeat Simple_repeat 1 113 0 306 153 59 12 chr21 28212304 28212474 -6695096 + (CA)n Simple_repeat Simple_repeat 1 178 0 333 0 0 0 chr21 28212595 28212632 -6694938 + (CA)n Simple_repeat Simple_repeat 1 37 0 763 250 31 10 chr21 28212684 28212876 -6694694 + MLT1A1 LTR MaLR 170 365 0 897 227 0 37 chr21 28212876 28213092 -6694478 - MLT1B LTR MaLR -182 208 1 2047 98 0 0 chr21 28213255 28213532 -6694038 + AluSc SINE Alu 1 277 -32 21 0 0 0 chr21 28213641 28213662 -6693908 + AT_rich Low_complexity Low_complexity 1 21 0 418 217 0 12 chr21 28214670 28214753 -6692817 - MLT1C LTR MaLR -32 435 354 1420 232 31 14 chr21 28215154 28215512 -6692058 - MLT1C LTR MaLR -98 369 6 315 130 0 0 chr21 28217325 28217379 -6690191 + (TCC)n Simple_repeat Simple_repeat 1 54 0 500 261 92 51 chr21 28220900 28221095 -6686475 + MIR SINE MIR 60 262 0 295 287 66 25 chr21 28221106 28221228 -6686342 - L2 LINE L2 -5 3308 3182 249 302 121 17 chr21 28221324 28221440 -6686130 - L2 LINE L2 -241 3031 2904 357 302 83 24 chr21 28221891 28222060 -6685510 + MIR SINE MIR 48 226 -36 574 256 97 89 chr21 28222721 28223112 -6684458 + MLT2F LTR ERVL 1 394 -269 1103 218 117 5 chr21 28223114 28223544 -6684026 + LTR53 LTR ERVL 4 505 -14 889 220 70 0 chr21 28223574 28223760 -6683810 + MLT2F LTR ERVL 401 599 -64 328 197 0 30 chr21 28223784 28223850 -6683720 - MLT2F LTR ERVL -47 616 553 605 197 89 120 chr21 28225498 28225757 -6681813 - MIR SINE MIR -11 251 1 932 238 45 20 chr21 28226192 28226600 -6680970 - MLT1C LTR MaLR 0 467 21 2357 131 28 17 chr21 28226958 28227318 -6680252 + THE1B LTR MaLR 1 364 0 1895 134 3 0 chr21 28228063 28228347 -6679223 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr21 28228347 28228368 -6679202 + AT_rich Low_complexity Low_complexity 1 21 0 786 253 45 29 chr21 28228996 28229241 -6678329 - MIR SINE MIR -1 261 13 2199 116 0 0 chr21 28230285 28230588 -6676982 - AluSq SINE Alu -10 303 1 219 272 136 0 chr21 28230670 28230751 -6676819 - L2 LINE L2 0 3313 3222 249 200 46 62 chr21 28230875 28230940 -6676630 - LTR16A1 LTR ERVL -207 250 187 429 302 55 42 chr21 28230948 28231186 -6676384 - L2 LINE L2 -889 2425 2185 2382 65 7 7 chr21 28231284 28231593 -6675977 + AluY SINE Alu 2 310 -1 2009 116 0 20 chr21 28231618 28231921 -6675649 + AluSc SINE Alu 13 309 0 1069 184 22 0 chr21 28231937 28232116 -6675454 + MSTC LTR MaLR 245 427 -1 897 308 48 4 chr21 28234929 28235202 -6672368 - LTR40a LTR ERVL 0 519 235 701 277 70 59 chr21 28235203 28235560 -6672010 - L2 LINE L2 -1 3312 2952 991 225 14 22 chr21 28235617 28235839 -6671731 - LTR40a LTR ERVL -299 220 1 273 149 0 21 chr21 28237692 28237739 -6669831 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 1103 213 18 5 chr21 28238267 28238488 -6669082 - MER58A DNA MER1_type 0 224 1 22 0 0 0 chr21 28239265 28239287 -6668283 + AT_rich Low_complexity Low_complexity 1 22 0 1837 116 4 7 chr21 28240464 28240741 -6666829 + AluSx SINE Alu 1 276 -36 325 54 36 0 chr21 28240741 28240797 -6666773 + (CAAAA)n Simple_repeat Simple_repeat 3 60 0 1037 301 30 0 chr21 28240834 28241173 -6666397 + LTR16B LTR ERVL 116 464 0 439 327 76 0 chr21 28241197 28241420 -6666150 + L2 LINE L2 1890 2129 -1185 1563 175 0 52 chr21 28241775 28242084 -6665486 - AluJo SINE Alu -9 303 11 1570 138 52 8 chr21 28243210 28243478 -6664092 + AluSp SINE Alu 21 300 -13 2110 87 35 0 chr21 28243922 28244209 -6663361 - AluSp SINE Alu -16 297 1 203 183 49 24 chr21 28244679 28244761 -6662809 + T-rich Low_complexity Low_complexity 2 85 0 415 242 20 0 chr21 28245753 28245852 -6661718 + MIR SINE MIR 112 212 -50 318 308 10 19 chr21 28246248 28246352 -6661218 + CT-rich Low_complexity Low_complexity 4 106 0 1983 123 49 37 chr21 28246364 28246689 -6660881 + THE1B LTR MaLR 1 329 -35 186 43 0 0 chr21 28246702 28246725 -6660845 + (TTCC)n Simple_repeat Simple_repeat 3 25 0 185 0 40 0 chr21 28246888 28246913 -6660657 + (GA)n Simple_repeat Simple_repeat 1 26 0 287 279 0 7 chr21 28247415 28247522 -6660048 + GA-rich Low_complexity Low_complexity 1 106 0 455 75 0 0 chr21 28247526 28247593 -6659977 + Alu SINE Alu 244 310 0 958 240 14 5 chr21 28248534 28248751 -6658819 + MER20 DNA MER1_type 1 219 0 37393 36 8 2 chr21 28249232 28255200 -6652370 - L1PA2 LINE L1 -1 6154 21 401 355 0 0 chr21 28256358 28256497 -6651073 + (CA)n Simple_repeat Simple_repeat 1 139 0 271 331 146 0 chr21 28256673 28256851 -6650719 - L2 LINE L2 -132 3181 2978 186 103 0 0 chr21 28257987 28258016 -6649554 + (CA)n Simple_repeat Simple_repeat 2 30 0 37543 36 3 2 chr21 28259519 28265538 -6642032 + L1PA2 LINE L1 1 6155 0 215 208 19 19 chr21 28265824 28265877 -6641693 - L2 LINE L2 0 3313 3261 211 268 0 0 chr21 28267112 28267168 -6640402 - MIR SINE MIR -115 147 92 765 241 91 57 chr21 28268172 28268441 -6639129 + MLT1G1 LTR MaLR 1 310 -285 271 289 79 26 chr21 28268510 28268624 -6638946 + MLT1G1 LTR MaLR 471 590 0 1191 192 52 8 chr21 28271230 28271480 -6636090 + MLT1C LTR MaLR 1 261 -206 258 372 27 21 chr21 28274364 28274552 -6633018 + MIR SINE MIR 9 197 -65 372 237 186 6 chr21 28276439 28276595 -6630975 + MER5A DNA MER1_type 1 184 -5 2271 74 32 0 chr21 28276845 28277130 -6630440 - AluY SINE Alu -17 294 1 309 330 17 80 chr21 28277789 28277965 -6629605 + MIR SINE MIR 20 184 -78 187 200 25 0 chr21 28280300 28280340 -6627230 + MIR SINE MIR 85 125 -137 25 0 0 0 chr21 28282363 28282388 -6625182 + AT_rich Low_complexity Low_complexity 1 25 0 537 122 0 0 chr21 28284157 28284231 -6623339 - AluJ/FRAM SINE Alu -21 291 218 2411 77 10 0 chr21 28284231 28284529 -6623041 - AluY SINE Alu -10 301 1 583 297 80 50 chr21 28284550 28284914 -6622656 + L2 LINE L2 2935 3309 -4 23 54 0 0 chr21 28285704 28285741 -6621829 + AT_rich Low_complexity Low_complexity 1 37 0 27 0 0 0 chr21 28286043 28286070 -6621500 + AT_rich Low_complexity Low_complexity 1 27 0 417 223 135 14 chr21 28286973 28287121 -6620449 - Charlie8 DNA MER1_type -2178 239 74 2311 109 0 0 chr21 28287651 28287955 -6619615 + AluSq SINE Alu 8 311 -2 255 119 0 0 chr21 28290508 28290550 -6617020 - L1MC4 LINE L1 -1343 6699 6658 186 396 86 0 chr21 28291818 28291957 -6615613 - L3 LINE CR1 -4 1573 1423 317 276 85 40 chr21 28292941 28293140 -6614430 - L3 LINE CR1 -713 864 657 1801 164 54 23 chr21 28293318 28293672 -6613898 - MER47A DNA MER2_type -1 365 1 433 141 0 22 chr21 28294053 28294145 -6613425 + (TCCC)n Simple_repeat Simple_repeat 4 93 0 25 31 0 0 chr21 28294795 28294827 -6612743 + AT_rich Low_complexity Low_complexity 1 32 0 2402 106 3 0 chr21 28295161 28295473 -6612097 + AluSp SINE Alu 1 313 0 744 175 0 27 chr21 28296549 28296732 -6610838 + GA-rich Low_complexity Low_complexity 3 180 0 360 156 33 11 chr21 28296727 28296817 -6610753 + A-rich Low_complexity Low_complexity 4 95 0 2559 53 0 7 chr21 28298705 28299005 -6608565 - AluY SINE Alu -13 298 1 233 295 148 0 chr21 28307323 28307445 -6600125 - MIR SINE MIR -20 242 103 2173 112 0 7 chr21 28308536 28308840 -6598730 + AluSc SINE Alu 1 302 -7 672 222 127 16 chr21 28309088 28309277 -6598293 + MER63A DNA MER1_type 1 210 0 2211 125 0 0 chr21 28309504 28309808 -6597762 + AluSx SINE Alu 1 304 -8 495 0 0 0 chr21 28310859 28310914 -6596656 + (CA)n Simple_repeat Simple_repeat 2 56 0 313 258 49 61 chr21 28315171 28315334 -6592236 + MER112 DNA MER1_type 2 162 -98 340 239 112 45 chr21 28315607 28315741 -6591829 + MER5A DNA MER1_type 23 165 -24 253 366 44 44 chr21 28316216 28316421 -6591149 + L2 LINE L2 1166 1370 -1944 304 316 63 68 chr21 28316530 28317018 -6590552 + L2 LINE L2 1613 2098 -1216 712 149 37 0 chr21 28317425 28317559 -6590011 + L1MC3 LINE L1 7638 7776 -9 272 327 63 19 chr21 28317592 28317751 -6589819 + L2 LINE L2 2714 2879 -435 241 198 27 117 chr21 28317906 28317972 -6589598 + L2 LINE L2 3119 3173 -140 2929 93 0 3 chr21 28317972 28318337 -6589233 - THE1B LTR MaLR 0 364 1 241 198 27 117 chr21 28318337 28318381 -6589189 + L2 LINE L2 3173 3219 -94 412 285 101 6 chr21 28318603 28318761 -6588809 + MLT1J2 LTR MaLR 274 446 -4 2391 254 46 51 chr21 28320481 28321269 -6586301 + L1MEc LINE L1 37 820 -5576 2106 180 62 23 chr21 28321274 28321342 -6586228 + L1MB7 LINE L1 5734 5798 -386 2291 129 36 38 chr21 28321342 28321707 -6585863 - THE1B LTR MaLR 0 364 1 2106 180 62 23 chr21 28321707 28322072 -6585498 + L1MB7 LINE L1 5798 6184 0 322 272 48 10 chr21 28322076 28322179 -6585391 + L1MEc LINE L1 835 941 -5455 473 219 34 0 chr21 28322230 28322349 -6585221 + L1MEc LINE L1 1006 1128 -5268 689 101 0 10 chr21 28322350 28322449 -6585121 + MER4A LTR ERV1 1 98 -566 1616 116 179 113 chr21 28322449 28322828 -6584742 + MER4A LTR ERV1 261 664 0 3067 251 49 41 chr21 28322840 28324017 -6583553 + L1MEc LINE L1 1151 2313 -3902 2266 92 0 0 chr21 28324017 28324375 -6583195 + AluY SINE Alu 1 358 0 3067 251 49 41 chr21 28324375 28324598 -6582972 + L1MEc LINE L1 2313 2533 -3682 393 322 37 7 chr21 28324722 28324893 -6582677 - MIR3 SINE MIR -65 143 6 21 0 0 0 chr21 28326993 28327014 -6580556 + AT_rich Low_complexity Low_complexity 1 21 0 900 137 0 86 chr21 28327764 28327939 -6579631 - MER1B DNA MER1_type 0 339 180 21 71 0 0 chr21 28329827 28329869 -6577701 + AT_rich Low_complexity Low_complexity 1 42 0 214 211 0 18 chr21 28330039 28330096 -6577474 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr21 28330125 28330147 -6577423 + AT_rich Low_complexity Low_complexity 1 22 0 213 174 12 23 chr21 28330151 28330237 -6577333 + (TA)n Simple_repeat Simple_repeat 2 86 0 22 0 0 0 chr21 28330266 28330288 -6577282 + AT_rich Low_complexity Low_complexity 1 22 0 2354 122 61 0 chr21 28330869 28331229 -6576341 + L1MC1 LINE L1 5942 6323 -10 2711 101 8 3 chr21 28331682 28332048 -6575522 + THE1C LTR MaLR 1 368 -7 8744 169 6 41 chr21 28332199 28332333 -6575237 - L1P LINE L1 -2231 3915 3778 2607 129 6 3 chr21 28332333 28332696 -6574874 - THE1B LTR MaLR 0 364 1 8744 169 6 41 chr21 28332696 28334282 -6573288 - L1P LINE L1 -2368 3778 2255 8766 147 16 2 chr21 28334272 28335789 -6571781 + L1PA13 LINE L1 3893 5428 -733 44801 43 1 0 chr21 28335796 28341935 -6565635 + L1PA4 LINE L1 7 6154 -1 5280 111 11 16 chr21 28341935 28342682 -6564888 + L1PA13 LINE L1 5413 6158 -5 2637 62 0 0 chr21 28343079 28343387 -6564183 + AluY SINE Alu 1 308 -3 267 31 0 0 chr21 28344307 28344339 -6563231 + (CA)n Simple_repeat Simple_repeat 2 33 0 208 385 90 25 chr21 28344402 28344680 -6562890 - L2 LINE L2 -466 2848 2553 1875 109 4 4 chr21 28344700 28344966 -6562604 + AluSx SINE Alu 39 304 -8 234 152 43 0 chr21 28346528 28346574 -6560996 - L2 LINE L2 -4 3309 3262 2156 118 3 7 chr21 28348040 28348344 -6559226 - AluSx SINE Alu -4 308 6 2054 172 33 0 chr21 28349305 28349672 -6557898 + L1MB3 LINE L1 5796 6174 -9 436 138 11 21 chr21 28350095 28350189 -6557381 + GA-rich Low_complexity Low_complexity 3 95 0 1939 130 42 88 chr21 28350800 28351208 -6556362 + MLT1B LTR MaLR 2 390 0 714 173 6 28 chr21 28352557 28352736 -6554834 + GA-rich Low_complexity Low_complexity 3 177 0 499 329 52 16 chr21 28353317 28353569 -6554001 + MIR SINE MIR 1 261 -1 341 318 90 30 chr21 28353925 28354126 -6553444 + L2 LINE L2 2252 2464 -850 527 271 71 102 chr21 28354189 28354609 -6552961 + L2 LINE L2 2851 3257 -15 2265 232 45 32 chr21 28354643 28355289 -6552281 + MLT1E1 LTR MaLR 1 654 0 1713 105 4 0 chr21 28357790 28358029 -6549541 - AluSx SINE Alu -18 294 55 21 0 0 0 chr21 28358738 28358759 -6548811 + AT_rich Low_complexity Low_complexity 1 21 0 213 159 0 0 chr21 28359960 28360004 -6547566 + A-rich Low_complexity Low_complexity 1 44 0 787 116 0 8 chr21 28360880 28361001 -6546569 - L1MA9 LINE L1 -175 6137 6018 795 162 19 19 chr21 28361011 28361165 -6546405 + L1MA9 LINE L1 6159 6312 0 280 228 148 62 chr21 28361701 28361863 -6545707 - MIR SINE MIR -29 233 58 793 222 0 12 chr21 28362685 28362847 -6544723 + FRAM SINE Alu 1 154 -22 2352 75 0 3 chr21 28363251 28363557 -6544013 + AluY SINE Alu 1 305 -6 459 0 0 0 chr21 28363953 28364004 -6543566 + (CA)n Simple_repeat Simple_repeat 2 52 0 36 70 0 0 chr21 28364041 28364112 -6543458 + AT_rich Low_complexity Low_complexity 1 71 0 274 143 54 18 chr21 28364587 28364699 -6542871 + (TG)n Simple_repeat Simple_repeat 1 116 0 369 119 77 7 chr21 28364777 28364920 -6542650 + (TG)n Simple_repeat Simple_repeat 1 153 0 379 98 98 6 chr21 28364931 28365095 -6542475 + (TG)n Simple_repeat Simple_repeat 1 179 0 453 110 83 0 chr21 28365142 28365287 -6542283 + (TG)n Simple_repeat Simple_repeat 1 157 0 537 87 60 20 chr21 28365354 28365503 -6542067 + (TG)n Simple_repeat Simple_repeat 1 155 0 1751 138 5 72 chr21 28365538 28365908 -6541662 - MER4A LTR ERV1 0 664 261 537 109 76 11 chr21 28365908 28366000 -6541570 - MER4A LTR ERV1 -566 98 1 283 171 65 32 chr21 28366001 28366124 -6541446 + (TG)n Simple_repeat Simple_repeat 1 127 0 428 96 84 12 chr21 28366136 28366302 -6541268 + (TG)n Simple_repeat Simple_repeat 1 178 0 223 149 68 0 chr21 28366320 28366394 -6541176 + (TG)n Simple_repeat Simple_repeat 1 79 0 2044 110 0 10 chr21 28367691 28367992 -6539578 + AluSx SINE Alu 1 298 -14 216 0 0 0 chr21 28368334 28368358 -6539212 + (CA)n Simple_repeat Simple_repeat 2 25 0 213 175 0 0 chr21 28368375 28368415 -6539155 + GA-rich Low_complexity Low_complexity 3 42 0 2333 48 0 0 chr21 28369868 28370158 -6537412 + AluY SINE Alu 1 290 -21 24 0 0 0 chr21 28370459 28370483 -6537087 + AT_rich Low_complexity Low_complexity 1 24 0 331 204 35 133 chr21 28371556 28371669 -6535901 - L2 LINE L2 -32 3281 3180 2144 112 0 0 chr21 28371921 28372217 -6535353 + AluSx SINE Alu 1 296 -16 312 330 42 17 chr21 28372261 28372379 -6535191 - L1MC4 LINE L1 -1307 6735 6615 26 0 0 0 chr21 28373411 28373437 -6534133 + AT_rich Low_complexity Low_complexity 1 26 0 355 305 78 30 chr21 28374159 28374326 -6533244 - L1MC4 LINE L1 -2005 5803 5629 720 220 66 0 chr21 28374717 28374899 -6532671 + L1MB7 LINE L1 5991 6184 0 204 200 0 0 chr21 28375067 28375112 -6532458 + (CCA)n Simple_repeat Simple_repeat 1 45 0 282 286 0 0 chr21 28375140 28375217 -6532353 + (CCA)n Simple_repeat Simple_repeat 1 77 0 336 240 26 45 chr21 28375391 28375545 -6532025 + (CCA)n Simple_repeat Simple_repeat 1 151 0 346 111 47 81 chr21 28375546 28375718 -6531852 + (CACCAT)n Simple_repeat Simple_repeat 4 169 0 343 119 35 77 chr21 28375921 28376064 -6531506 + (CACCAT)n Simple_repeat Simple_repeat 3 139 0 462 251 28 22 chr21 28376128 28376307 -6531263 + (CCA)n Simple_repeat Simple_repeat 1 180 0 719 227 17 23 chr21 28379977 28380153 -6527417 + MER5A DNA MER1_type 15 189 0 493 88 10 39 chr21 28380503 28380605 -6526965 + (TTCC)n Simple_repeat Simple_repeat 2 100 0 1600 175 16 13 chr21 28380605 28380913 -6526657 - AluJb SINE Alu -3 309 1 44 0 0 0 chr21 28382412 28382456 -6525114 + AT_rich Low_complexity Low_complexity 1 44 0 486 33 0 0 chr21 28382642 28382702 -6524868 + (GA)n Simple_repeat Simple_repeat 2 61 0 2116 144 3 0 chr21 28382914 28383253 -6524317 + MST-int LTR MaLR 17 356 -1295 257 91 0 68 chr21 28383254 28383298 -6524272 + THE1-int LTR MaLR 1423 1463 -117 1166 245 39 33 chr21 28383347 28383682 -6523888 + MER58B DNA MER1_type 2 338 -3 1714 185 10 0 chr21 28384044 28384352 -6523218 - AluJb SINE Alu -1 311 1 1687 166 3 31 chr21 28384461 28384781 -6522789 + AluJb SINE Alu 1 311 -1 25 0 0 0 chr21 28385929 28385954 -6521616 + AT_rich Low_complexity Low_complexity 1 25 0 1696 171 3 3 chr21 28385954 28386241 -6521329 - AluSx SINE Alu -25 287 1 199 213 66 16 chr21 28387875 28387936 -6519634 - L2 LINE L2 -60 3253 3190 205 281 67 11 chr21 28388425 28388514 -6519056 - MIR SINE MIR -10 252 159 345 82 0 0 chr21 28389429 28389478 -6518092 + (CA)n Simple_repeat Simple_repeat 2 50 0 2002 116 0 14 chr21 28390875 28391192 -6516378 + AluSx SINE Alu 2 314 0 228 35 0 0 chr21 28392522 28392551 -6515019 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2091 101 16 0 chr21 28394143 28394449 -6513121 + AluY SINE Alu 1 311 0 444 329 38 13 chr21 28395180 28395338 -6512232 + MIR SINE MIR 44 205 -57 2074 127 0 0 chr21 28397437 28397736 -6509834 - AluSx SINE Alu -13 299 1 30 0 0 0 chr21 28398090 28398120 -6509450 + AT_rich Low_complexity Low_complexity 1 30 0 1626 151 4 0 chr21 28398380 28398638 -6508932 + AluSx SINE Alu 35 293 -19 206 209 15 75 chr21 28399105 28399172 -6508398 - L2 LINE L2 -30 3283 3221 578 296 55 62 chr21 28399385 28399676 -6507894 - L2 LINE L2 -4 3309 3021 288 230 62 0 chr21 28400819 28400905 -6506665 - MER58 DNA MER1_type 0 2420 115 1487 196 37 71 chr21 28401395 28401461 -6506109 - MLT1A1 LTR MaLR 0 365 298 2226 116 0 13 chr21 28401461 28401772 -6505798 - AluSx SINE Alu -5 307 1 1487 196 37 71 chr21 28401772 28402083 -6505487 - MLT1A1 LTR MaLR -67 298 1 528 59 0 0 chr21 28402129 28402197 -6505373 + (CA)n Simple_repeat Simple_repeat 2 69 0 249 139 0 0 chr21 28405543 28405586 -6501984 + (A)n Simple_repeat Simple_repeat 1 43 0 452 313 8 0 chr21 28406395 28406529 -6501041 + L2 LINE L2 3137 3271 -1 207 287 107 60 chr21 28407652 28407802 -6499768 - MER5B DNA MER1_type -2 176 20 306 170 53 75 chr21 28407712 28407806 -6499764 + MER5A DNA MER1_type 88 179 -10 327 284 167 10 chr21 28409920 28410124 -6497446 + L3 LINE CR1 1246 1481 -96 182 294 71 71 chr21 28410265 28410391 -6497179 - L2 LINE L2 -8 3264 3139 289 162 0 88 chr21 28410475 28410543 -6497027 - L2 LINE L2 -212 3060 2999 302 296 64 16 chr21 28411047 28411172 -6496398 - L2 LINE L2 -4 3268 3138 216 143 0 0 chr21 28414449 28414491 -6493079 + (CA)n Simple_repeat Simple_repeat 1 42 0 2308 128 8 35 chr21 28415887 28416261 -6491309 + THE1B LTR MaLR 1 364 0 360 271 57 81 chr21 28416791 28417001 -6490569 + L1MEd LINE L1 317 521 -5598 721 266 165 7 chr21 28417006 28417303 -6490267 + L1MEd LINE L1 555 898 -5221 364 176 0 0 chr21 28417875 28417949 -6489621 - L1MB8 LINE L1 0 6178 6105 1679 205 81 29 chr21 28417960 28418404 -6489166 - MLT1C LTR MaLR 0 467 1 2255 212 27 34 chr21 28418460 28418598 -6488972 - L1MB8 LINE L1 -81 6097 5960 2389 119 24 32 chr21 28418598 28418976 -6488594 + THE1C LTR MaLR 1 375 0 2255 212 27 34 chr21 28418976 28419394 -6488176 - L1MB8 LINE L1 -218 5960 5545 784 229 5 46 chr21 28421098 28421316 -6486254 - MER63A DNA MER1_type 0 210 2 28 0 0 0 chr21 28421436 28421464 -6486106 + AT_rich Low_complexity Low_complexity 1 28 0 208 180 0 20 chr21 28421689 28421739 -6485831 + A-rich Low_complexity Low_complexity 1 49 0 499 268 48 18 chr21 28422713 28422881 -6484689 + MER5B DNA MER1_type 5 177 -1 419 325 18 12 chr21 28422925 28423091 -6484479 + CT-rich Low_complexity Low_complexity 2 168 0 2565 71 0 0 chr21 28423465 28423776 -6483794 - AluY SINE Alu 0 311 1 219 200 44 0 chr21 28423968 28424013 -6483557 + CT-rich Low_complexity Low_complexity 1 47 0 329 267 0 0 chr21 28424191 28424266 -6483304 - MIR SINE MIR -102 106 32 1382 212 11 11 chr21 28424510 28424797 -6482773 - MER45C DNA AcHobo -3 950 664 994 226 45 0 chr21 28425043 28425242 -6482328 - MER45C DNA AcHobo -662 291 84 3230 69 14 0 chr21 28425634 28426054 -6481516 - L1PA8 LINE L1 -290 5882 5457 2016 73 8 0 chr21 28426054 28426312 -6481258 + L1PA8 LINE L1 5912 6172 0 271 187 187 0 chr21 28426378 28426453 -6481117 - L1MB4 LINE L1 0 6180 6095 2093 168 45 26 chr21 28426567 28426985 -6480585 - L1MB3 LINE L1 -88 6095 5670 236 183 110 73 chr21 28427083 28427165 -6480405 + MIR SINE MIR 108 192 -70 2081 143 3 0 chr21 28427798 28428098 -6479472 - AluSp SINE Alu -11 302 2 324 312 56 0 chr21 28428403 28428528 -6479042 + MLT1F1 LTR MaLR 182 313 -254 304 250 146 0 chr21 28428858 28428954 -6478616 + MIR SINE MIR 89 198 -64 465 286 81 3 chr21 28429360 28429520 -6478050 - MIR SINE MIR -61 201 34 293 221 0 12 chr21 28429555 28429641 -6477929 - L1ME3A LINE L1 -225 5945 5861 299 141 62 16 chr21 28429714 28429778 -6477792 + MER5A DNA MER1_type 37 103 -86 24 0 0 0 chr21 28430224 28430248 -6477322 + AT_rich Low_complexity Low_complexity 1 24 0 275 385 0 0 chr21 28430550 28430685 -6476885 + (TG)n Simple_repeat Simple_repeat 2 136 0 2338 113 0 0 chr21 28431679 28431981 -6475589 + AluSx SINE Alu 1 302 -10 289 238 49 67 chr21 28432718 28432882 -6474688 - MER5A DNA MER1_type -28 161 1 1129 207 0 21 chr21 28433061 28433298 -6474272 + AluJo SINE Alu 77 308 -4 1717 205 51 11 chr21 28434048 28434423 -6473147 - MLT1B LTR MaLR 0 390 1 1902 135 0 4 chr21 28434529 28434795 -6472775 + AluSq SINE Alu 1 265 -48 253 271 85 25 chr21 28436752 28436870 -6470700 - L1MC4a LINE L1 -33 7775 7651 2211 131 0 0 chr21 28436898 28437203 -6470367 - AluSx SINE Alu -7 305 1 2385 222 43 21 chr21 28437298 28437641 -6469929 - L1MD2 LINE L1 -87 6079 5725 186 43 0 0 chr21 28437641 28437664 -6469906 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2385 222 43 21 chr21 28437664 28437952 -6469618 - L1MD2 LINE L1 -441 5725 5445 2080 112 0 36 chr21 28438322 28438626 -6468944 - AluSg SINE Alu -17 293 1 1356 224 79 48 chr21 28439043 28439484 -6468086 + MLT1C LTR MaLR 6 460 -7 480 231 8 17 chr21 28440786 28440903 -6466667 + L1PA15-16 LINE L1 1 116 -6733 628 256 34 6 chr21 28440933 28441109 -6466461 + L1 LINE L1 2210 2390 -3756 485 176 46 0 chr21 28441121 28441229 -6466341 + L1 LINE L1 2367 2479 -3667 632 130 43 136 chr21 28441234 28441311 -6466259 + L1PB3 LINE L1 5659 5742 -412 2844 10 0 0 chr21 28441311 28441614 -6465956 + AluYb8 SINE Alu 16 318 0 632 130 43 136 chr21 28441614 28441685 -6465885 + L1PB3 LINE L1 5742 5789 -365 397 181 0 0 chr21 28441685 28441757 -6465813 + L1PA16 LINE L1 6095 6166 0 632 130 43 136 chr21 28441757 28441791 -6465779 + L1PB3 LINE L1 5789 5825 -329 2369 118 40 8 chr21 28441791 28442165 -6465405 + L1PB3 LINE L1 5769 6154 0 1532 174 26 45 chr21 28442462 28442772 -6464798 - AluJo SINE Alu -8 304 1 1217 87 6 6 chr21 28443769 28443941 -6463629 - L1PA14 LINE L1 -2 6159 5988 8279 155 24 11 chr21 28443941 28445718 -6461852 - L1PA14 LINE L1 -594 5574 3773 442 314 44 7 chr21 28445744 28446018 -6461552 - L1ME4a LINE L1 -269 5852 5569 487 276 25 7 chr21 28447301 28447462 -6460108 - MIR SINE MIR -62 146 38 190 183 49 12 chr21 28447703 28447785 -6459785 + (TATATG)n Simple_repeat Simple_repeat 5 89 0 267 110 49 49 chr21 28447792 28447874 -6459696 + (TATAA)n Simple_repeat Simple_repeat 1 82 0 4421 220 70 14 chr21 28447894 28448972 -6458598 + Charlie1a DNA MER1_type 1 1139 -316 548 267 125 11 chr21 28452382 28452558 -6455012 - MIR SINE MIR -50 212 17 2884 97 8 5 chr21 28453103 28453493 -6454077 - L1PA13 LINE L1 -5 6158 5768 10275 188 42 55 chr21 28454050 28456485 -6451085 - L1MC3 LINE L1 -20 8183 5780 844 275 23 20 chr21 28456475 28456780 -6450790 - L1MC3 LINE L1 -2419 4145 3840 856 257 30 27 chr21 28456865 28457165 -6450405 - L1MC3 LINE L1 -3056 3508 3208 374 218 40 0 chr21 28457154 28457255 -6450315 - L1MC3 LINE L1 -5369 676 572 25 0 0 0 chr21 28457483 28457508 -6450062 + AT_rich Low_complexity Low_complexity 1 25 0 1052 263 27 46 chr21 28457543 28457856 -6449714 - L1MC3 LINE L1 -5680 365 59 1941 164 0 0 chr21 28457856 28458161 -6449409 - AluJb SINE Alu -7 305 1 1052 263 27 46 chr21 28458161 28458219 -6449351 - L1MC3 LINE L1 -5986 59 1 22 70 0 0 chr21 28459294 28459337 -6448233 + AT_rich Low_complexity Low_complexity 1 43 0 948 127 7 7 chr21 28459394 28459536 -6448034 + L1PA15 LINE L1 6003 6144 -21 23 0 0 0 chr21 28459673 28459696 -6447874 + AT_rich Low_complexity Low_complexity 1 23 0 491 311 17 11 chr21 28460634 28460811 -6446759 + MIR SINE MIR 60 237 -25 532 315 71 0 chr21 28462944 28463141 -6444429 + MIR SINE MIR 35 245 -17 307 170 0 19 chr21 28463521 28463574 -6443996 - MLT1D LTR MaLR -117 388 337 5125 50 0 0 chr21 28463574 28464159 -6443411 - L1PA7 LINE L1 -1 6153 5569 940 211 6 0 chr21 28464196 28464371 -6443199 - MLT1D LTR MaLR -309 196 21 256 336 47 0 chr21 28464517 28464624 -6442946 - MER5A DNA MER1_type -28 161 50 200 221 0 135 chr21 28466423 28466527 -6441043 - MER5A DNA MER1_type -99 90 1 216 0 0 0 chr21 28466708 28466732 -6440838 + (T)n Simple_repeat Simple_repeat 1 24 0 6537 104 2 10 chr21 28467265 28468507 -6439063 + L1PA14 LINE L1 4910 6144 -17 416 304 84 29 chr21 28468936 28469209 -6438361 + MLT1I LTR MaLR 101 388 -21 24 53 0 0 chr21 28469616 28469654 -6437916 + AT_rich Low_complexity Low_complexity 1 38 0 668 259 20 0 chr21 28469846 28469993 -6437577 - MER45A DNA AcHobo -28 150 1 2265 115 0 0 chr21 28470527 28470831 -6436739 + AluSx SINE Alu 1 304 -8 1066 163 5 0 chr21 28472302 28472498 -6435072 + LTR54 LTR ERV1 284 480 -30 1777 142 0 76 chr21 28472598 28472914 -6434656 + AluSx SINE Alu 6 297 -15 2627 121 0 3 chr21 28473225 28473581 -6433989 - THE1A LTR MaLR 0 355 1 12424 90 18 0 chr21 28473581 28475133 -6432437 - THE1A-int LTR MaLR 0 1580 1 2825 101 0 0 chr21 28475133 28475488 -6432082 - THE1A LTR MaLR 0 355 1 2460 119 14 11 chr21 28475558 28475912 -6431658 + THE1A LTR MaLR 1 355 0 1548 230 58 110 chr21 28477982 28478599 -6428971 + MLT1E LTR MaLR 1 585 -8 24 0 0 0 chr21 28478919 28478943 -6428627 + AT_rich Low_complexity Low_complexity 1 24 0 251 261 20 105 chr21 28479711 28479864 -6427706 + MER77 LTR ERV1 58 197 -408 1726 276 49 41 chr21 28479837 28480474 -6427096 + MER21B LTR ERV1 98 739 -124 401 282 75 0 chr21 28480981 28481155 -6426415 + LTR16A LTR ERVL 224 410 -40 271 350 91 14 chr21 28481296 28481439 -6426131 + L2 LINE L2 3155 3308 -5 1841 256 15 68 chr21 28481779 28482436 -6425134 + MLT1E2 LTR MaLR 5 626 0 310 150 0 0 chr21 28482707 28482772 -6424798 - MLT2D LTR ERVL 0 554 456 201 39 0 0 chr21 28482772 28482798 -6424772 + (GA)n Simple_repeat Simple_repeat 1 26 0 1901 181 49 6 chr21 28482831 28483180 -6424390 - MLT2D LTR ERVL -50 364 1 1700 180 3 16 chr21 28483180 28483487 -6424083 - ERVL-D LTR ERVL -7 5757 5453 992 251 78 39 chr21 28483487 28483818 -6423752 + MER2 DNA MER2_type 1 344 0 261 0 0 0 chr21 28483828 28483857 -6423713 + (CA)n Simple_repeat Simple_repeat 2 30 0 5038 61 3 0 chr21 28484833 28485421 -6422149 + LTR10C LTR ERV1 1 590 -1 256 270 0 0 chr21 28485670 28485733 -6421837 + L2 LINE L2 2905 2967 -346 1446 63 0 0 chr21 28486020 28486194 -6421376 - AluY SINE Alu 0 311 138 337 25 0 0 chr21 28486194 28486234 -6421336 + LTR10C LTR ERV1 431 470 -121 1217 44 0 0 chr21 28486249 28486385 -6421185 - AluY SINE Alu -175 136 1 1534 207 16 12 chr21 28487237 28487556 -6420014 + MER90 LTR ERV1 10 329 -246 382 107 18 0 chr21 28487556 28487612 -6419958 + MSTC LTR MaLR 1 57 -371 947 224 105 80 chr21 28487616 28488005 -6419565 + MLT2B1 LTR ERVL 28 464 -56 315 0 0 0 chr21 28488011 28488046 -6419524 + (CA)n Simple_repeat Simple_repeat 2 36 0 345 136 0 11 chr21 28488102 28488167 -6419403 + MLT2B2 LTR ERVL 402 513 -2 638 222 38 65 chr21 28488176 28488361 -6419209 + MLT1B LTR MaLR 1 180 -194 345 159 0 0 chr21 28488366 28488429 -6419141 + CT-rich Low_complexity Low_complexity 2 64 0 711 212 13 13 chr21 28488439 28488590 -6418980 + MLT1B LTR MaLR 193 343 -47 962 207 15 5 chr21 28488671 28488869 -6418701 + MSTC LTR MaLR 229 428 0 1147 229 29 0 chr21 28488869 28489113 -6418457 + MER90 LTR ERV1 364 614 0 346 213 0 0 chr21 28489169 28489230 -6418340 + L2 LINE L2 3211 3271 -1 11223 173 30 22 chr21 28489692 28491275 -6416295 + L1PB3 LINE L1 2761 4378 -1776 1883 132 36 26 chr21 28491275 28491578 -6415992 + AluSx SINE Alu 1 306 -6 11223 173 30 22 chr21 28491578 28493004 -6414566 + L1PB3 LINE L1 4378 5791 -363 269 187 39 7 chr21 28493004 28493159 -6414411 + (TA)n Simple_repeat Simple_repeat 1 160 0 2576 126 6 3 chr21 28493180 28493545 -6414025 + L1PB3 LINE L1 5789 6154 0 1616 162 75 37 chr21 28493573 28493949 -6413621 - Tigger3b DNA MER2_type -840 391 2 2211 120 3 0 chr21 28493973 28494272 -6413298 + AluSq SINE Alu 1 300 -13 269 315 0 11 chr21 28494279 28494368 -6413202 + (TATATG)n Simple_repeat Simple_repeat 5 92 0 255 302 78 16 chr21 28494368 28494497 -6413073 + L2 LINE L2 2870 3006 -307 1351 115 0 26 chr21 28495033 28495225 -6412345 + AluSq SINE Alu 9 195 -118 1562 211 97 44 chr21 28495879 28496314 -6411256 - MLT1C LTR MaLR 0 467 10 343 284 10 10 chr21 28496593 28496695 -6410875 - MLT1C LTR MaLR -58 409 308 637 136 12 2 chr21 28496939 28497060 -6410510 + MSTA LTR MaLR 1 122 -304 1043 131 11 17 chr21 28497919 28498095 -6409475 + MER4A LTR ERV1 1 175 -489 542 142 242 8 chr21 28498289 28498409 -6409161 + MER4C LTR ERV1 300 447 -18 1532 236 43 11 chr21 28499999 28500347 -6407223 - MLT1A1 LTR MaLR -2 363 5 1591 196 0 17 chr21 28501401 28501697 -6405873 + AluJo SINE Alu 1 291 -21 851 90 0 0 chr21 28503991 28504102 -6403468 - AluSg/x SINE Alu -11 298 188 1077 115 0 6 chr21 28504101 28504257 -6403313 + AluSg/x SINE Alu 155 309 0 1180 217 47 31 chr21 28504259 28504646 -6402924 + L1M4 LINE L1 4160 4552 -1594 753 214 25 6 chr21 28504647 28504806 -6402764 - MER58A DNA MER1_type -1 223 62 1096 222 124 38 chr21 28504810 28505076 -6402494 + AluJo SINE Alu 2 290 -22 357 82 0 0 chr21 28505078 28505127 -6402443 + (GGA)n Simple_repeat Simple_repeat 1 49 0 244 231 26 77 chr21 28505216 28505294 -6402276 - MER58A DNA MER1_type -33 74 1 6341 76 18 2 chr21 28505699 28506501 -6401069 + L1PA8 LINE L1 5358 6171 -1 1560 195 3 26 chr21 28506540 28506847 -6400723 - AluJo SINE Alu -12 300 1 183 306 0 0 chr21 28507098 28507147 -6400423 - L2 LINE L2 -21 3251 3203 1076 236 66 49 chr21 28507174 28507539 -6400031 + MLT1F LTR MaLR 168 538 -4 282 271 94 0 chr21 28507540 28507625 -6399945 + MIR SINE MIR 83 175 -87 25 31 0 0 chr21 28507705 28507737 -6399833 + AT_rich Low_complexity Low_complexity 1 32 0 319 246 80 0 chr21 28508082 28508211 -6399359 - L1MC/D LINE L1 -766 5404 5293 2620 41 0 13 chr21 28508664 28508979 -6398591 + AluY SINE Alu 1 311 0 237 261 94 82 chr21 28514619 28514864 -6392706 + L1MC/D LINE L1 4467 4714 -1432 272 366 65 37 chr21 28515091 28515307 -6392263 - MIR SINE MIR 0 262 41 1722 165 7 16 chr21 28515829 28516138 -6391432 + MER44D DNA MER2_type 1 576 -33 397 312 88 62 chr21 28516434 28516699 -6390871 + HAL1b LINE L1 61 338 -1010 2226 119 0 0 chr21 28516699 28517001 -6390569 + AluSg SINE Alu 1 302 -8 397 312 88 62 chr21 28517001 28517075 -6390495 + HAL1b LINE L1 338 409 -939 466 272 131 15 chr21 28517520 28517726 -6389844 + L2 LINE L2 2531 2760 -554 234 298 64 0 chr21 28517855 28517949 -6389621 + L2 LINE L2 2837 2936 -377 189 0 0 0 chr21 28518544 28518565 -6389005 + (T)n Simple_repeat Simple_repeat 1 21 0 241 313 65 44 chr21 28518806 28519081 -6388489 + L1MC/D LINE L1 5417 5697 -2111 2252 88 24 3 chr21 28519099 28519394 -6388176 - AluY SINE Alu -10 301 1 376 264 51 92 chr21 28519574 28519866 -6387704 + MLT1J LTR MaLR 159 438 -73 1724 90 0 26 chr21 28519962 28520196 -6387374 + AluSg/x SINE Alu 66 293 -17 310 313 65 42 chr21 28520620 28520837 -6386733 + L1ME LINE L1 5320 5541 -580 2336 105 3 0 chr21 28522908 28523214 -6384356 + AluSp SINE Alu 1 307 -6 417 385 34 0 chr21 28524172 28524411 -6383159 + MIR SINE MIR 11 257 -5 2203 109 3 7 chr21 28524437 28524739 -6382831 - AluSg1 SINE Alu -8 301 1 995 227 0 0 chr21 28527081 28527266 -6380304 - MER5A DNA MER1_type -2 187 3 589 327 14 9 chr21 28527266 28527483 -6380087 + LTR16C LTR ERVL 274 491 0 408 336 63 32 chr21 28527483 28527736 -6379834 + L2 LINE L2 2587 2847 -467 2356 98 95 18 chr21 28528542 28528880 -6378690 + THE1B LTR MaLR 1 364 0 872 266 99 52 chr21 28529690 28530054 -6377516 + L2 LINE L2 2933 3313 0 2507 161 22 20 chr21 28530639 28531085 -6376485 - Tigger1 DNA MER2_type -1605 813 367 2084 173 35 14 chr21 28531095 28531465 -6376105 - Tigger1 DNA MER2_type -2019 399 22 2068 148 0 0 chr21 28531466 28531776 -6375794 + AluSx SINE Alu 1 310 -2 14358 28 1 1 chr21 28531781 28533442 -6374128 - L1PA3 LINE L1 -975 5171 3511 8128 27 1 2 chr21 28533442 28534454 -6373116 + L1PA3 LINE L1 5142 6152 -3 541 363 23 23 chr21 28534813 28535075 -6372495 - L1MEc LINE L1 -5951 445 184 1207 309 30 39 chr21 28535305 28535900 -6371670 + L2 LINE L2 1543 2132 -1182 606 336 62 9 chr21 28535942 28536278 -6371292 + L2 LINE L2 2367 2720 -594 672 250 6 12 chr21 28536384 28536548 -6371022 - MER5B DNA MER1_type -14 164 2 387 274 8 51 chr21 28536597 28536714 -6370856 - MER5B DNA MER1_type -64 114 3 221 274 75 19 chr21 28537665 28537771 -6369799 - MIR3 SINE MIR 0 208 97 243 0 0 0 chr21 28538292 28538319 -6369251 + (T)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr21 28538949 28538970 -6368600 + AT_rich Low_complexity Low_complexity 1 21 0 1709 157 16 19 chr21 28539189 28539501 -6368069 + AluJo SINE Alu 1 311 -1 322 244 34 42 chr21 28540378 28540497 -6367073 - L2 LINE L2 0 3313 3196 427 209 173 18 chr21 28541112 28541222 -6366348 + MIR SINE MIR 19 145 -117 187 229 0 0 chr21 28541251 28541286 -6366284 - MER5A DNA MER1_type 0 189 155 2143 115 0 16 chr21 28541475 28541780 -6365790 + AluSx SINE Alu 1 300 -12 23 54 0 0 chr21 28542437 28542474 -6365096 + AT_rich Low_complexity Low_complexity 1 37 0 2347 92 0 13 chr21 28543874 28544189 -6363381 - AluSq SINE Alu 0 313 3 1198 15 0 0 chr21 28544304 28544438 -6363132 - L1PA3 LINE L1 -272 5883 5750 2268 66 7 0 chr21 28544438 28544705 -6362865 + L1PA3 LINE L1 5880 6155 0 252 86 0 0 chr21 28545787 28545822 -6361748 + (TG)n Simple_repeat Simple_repeat 1 35 0 1629 184 48 7 chr21 28545822 28546132 -6361438 - L1M2 LINE L1 -533 5779 5457 2778 102 34 0 chr21 28546189 28546571 -6360999 + L1PA10 LINE L1 5774 6168 0 21 36 0 0 chr21 28546849 28546877 -6360693 + AT_rich Low_complexity Low_complexity 1 28 0 2197 122 27 43 chr21 28546882 28547252 -6360318 - THE1B LTR MaLR 0 364 1 2243 89 0 20 chr21 28548880 28549183 -6358387 - AluSq SINE Alu -16 297 1 718 232 116 0 chr21 28549451 28549649 -6357921 + LTR16A LTR ERVL 223 443 -7 2392 103 3 0 chr21 28550180 28550490 -6357080 + AluSq SINE Alu 1 311 -2 411 252 87 8 chr21 28552131 28552258 -6355312 + L1ME LINE L1 5505 5641 -521 27 0 0 0 chr21 28552414 28552441 -6355129 + AT_rich Low_complexity Low_complexity 1 27 0 334 282 112 84 chr21 28552829 28553212 -6354358 + L3 LINE CR1 1183 1576 -1 326 277 12 12 chr21 28553247 28553330 -6354240 - L1MC4 LINE L1 -1339 6703 6621 2330 141 32 28 chr21 28553735 28554168 -6353402 - L1MA9 LINE L1 -1825 4321 3887 5141 157 34 60 chr21 28554180 28555714 -6351856 + L1MA9 LINE L1 4315 5800 -512 2038 93 0 0 chr21 28555714 28556035 -6351535 + AluSc SINE Alu 23 343 0 5141 157 34 60 chr21 28556035 28556506 -6351064 + L1MA9 LINE L1 5800 6282 -30 508 119 65 0 chr21 28556611 28556779 -6350791 + (TA)n Simple_repeat Simple_repeat 1 179 0 22 0 0 0 chr21 28558835 28558857 -6348713 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr21 28559676 28559713 -6347857 + AT_rich Low_complexity Low_complexity 1 37 0 1743 143 4 0 chr21 28559740 28559998 -6347572 - AluSx SINE Alu -28 284 26 472 216 0 21 chr21 28560114 28560211 -6347359 - AluJo/FRAM SINE Alu -80 232 138 248 213 0 0 chr21 28560211 28560258 -6347312 - Alu SINE Alu -120 182 136 1769 279 61 42 chr21 28560499 28560995 -6346575 + L2 LINE L2 2175 2693 -621 829 211 0 34 chr21 28560995 28561170 -6346400 - FAM SINE Alu -6 169 1 1769 279 61 42 chr21 28561170 28561460 -6346110 + L2 LINE L2 2693 2976 -338 289 189 81 14 chr21 28561763 28561837 -6345733 + MLT1K LTR MaLR 510 588 0 3360 256 31 19 chr21 28562092 28563068 -6344502 + Charlie1a DNA MER1_type 6 992 -463 474 276 12 49 chr21 28563093 28563256 -6344314 + L2 LINE L2 3156 3312 -1 191 286 36 36 chr21 28563763 28563847 -6343723 + MIR SINE MIR 28 111 -97 460 44 176 0 chr21 28566159 28566227 -6341343 - MADE1 DNA Mariner 0 80 1 567 212 8 0 chr21 28566510 28566628 -6340942 + MER94 DNA DNA 1 119 -15 884 216 47 20 chr21 28567809 28568064 -6339506 - L1ME2 LINE L1 -13 6962 6701 819 260 75 12 chr21 28568077 28568408 -6339162 - L1MC4 LINE L1 -240 7802 7451 361 211 19 0 chr21 28568415 28568519 -6339051 - L1ME2 LINE L1 -774 6199 6094 263 132 19 0 chr21 28568670 28568723 -6338847 - L1ME2 LINE L1 -917 6040 5987 430 278 38 33 chr21 28568737 28568949 -6338621 - L1ME2 LINE L1 -1034 5923 5711 243 188 0 0 chr21 28568958 28569006 -6338564 + (TATATG)n Simple_repeat Simple_repeat 2 49 0 822 192 78 6 chr21 28569063 28569230 -6338340 - AluJb SINE Alu -128 184 6 1782 267 56 9 chr21 28569254 28570000 -6337570 - L1ME2 LINE L1 -1572 5385 4605 637 28 66 9 chr21 28570172 28570278 -6337292 + T-rich Low_complexity Low_complexity 2 113 0 1948 130 18 0 chr21 28570280 28570557 -6337013 - AluSx SINE Alu -30 282 1 927 270 52 44 chr21 28570759 28571671 -6335899 - L1ME2 LINE L1 -4672 2466 1373 708 200 24 71 chr21 28573223 28573393 -6334177 + MER20 DNA MER1_type 3 164 -55 2173 92 11 0 chr21 28573395 28573676 -6333894 + AluSp SINE Alu 19 302 -11 2245 97 13 0 chr21 28575218 28575518 -6332052 + AluY SINE Alu 1 304 -7 212 188 0 0 chr21 28575825 28575857 -6331713 - L2 LINE L2 -15 3257 3226 192 40 0 0 chr21 28576067 28576092 -6331478 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 443 291 36 9 chr21 28576095 28576315 -6331255 + L1MEc LINE L1 1325 1550 -4846 232 200 18 18 chr21 28576344 28576399 -6331171 - L1M4c LINE L1 -3909 2475 2421 351 98 0 0 chr21 28576421 28576472 -6331098 - L1PA8 LINE L1 -10 6162 6112 2414 80 8 14 chr21 28576472 28576837 -6330733 + L1P LINE L1 4968 5330 -816 840 163 58 41 chr21 28577236 28577408 -6330162 - FRAM SINE Alu -1 175 1 944 53 76 15 chr21 28578386 28578517 -6329053 + MER85 DNA T2_type 1 139 0 323 267 92 50 chr21 28579572 28579692 -6327878 + MIR SINE MIR 22 146 -62 994 224 11 0 chr21 28580449 28580713 -6326857 + L1MA4 LINE L1 6027 6293 -7 21 0 0 0 chr21 28580717 28580738 -6326832 + AT_rich Low_complexity Low_complexity 1 21 0 889 191 0 0 chr21 28580738 28580890 -6326680 - FRAM SINE Alu -24 152 1 2500 69 0 0 chr21 28580926 28581232 -6326338 + AluY SINE Alu 1 306 -5 269 342 94 0 chr21 28581323 28581440 -6326130 - L2 LINE L2 0 3272 3145 237 269 47 83 chr21 28581453 28581646 -6325924 - L2 LINE L2 -124 3189 3004 1799 172 42 11 chr21 28582172 28582532 -6325038 - L1MA9 LINE L1 -331 5981 5611 1190 154 89 72 chr21 28582528 28582747 -6324823 + L1MA9 LINE L1 6012 6239 -73 180 0 0 0 chr21 28582747 28582767 -6324803 + (TA)n Simple_repeat Simple_repeat 2 21 0 1190 154 89 72 chr21 28582767 28582839 -6324731 + L1MA9 LINE L1 6239 6308 -4 1660 47 14 0 chr21 28584022 28584233 -6323337 + L1PA4 LINE L1 5942 6155 0 1538 195 85 28 chr21 28584633 28584883 -6322687 + L1MB7 LINE L1 4901 5135 -1031 2159 105 17 0 chr21 28584883 28585178 -6322392 + AluSx SINE Alu 1 300 -12 1538 195 85 28 chr21 28585178 28585539 -6322031 + L1MB7 LINE L1 5135 5549 -617 1737 248 94 4 chr21 28585768 28586321 -6321249 + L1MB7 LINE L1 5572 6174 -10 3960 135 13 23 chr21 28586346 28586482 -6321088 - L1PA16 LINE L1 -1 6165 6029 2400 77 0 10 chr21 28586482 28586792 -6320778 - AluY SINE Alu -4 307 1 3960 135 13 23 chr21 28586792 28587342 -6320228 - L1PA16 LINE L1 -137 6029 5486 30 27 0 0 chr21 28587485 28587522 -6320048 + AT_rich Low_complexity Low_complexity 1 37 0 2090 114 3 10 chr21 28587697 28588021 -6319549 + AluSc SINE Alu 1 309 0 2713 43 4 3 chr21 28588258 28588619 -6318951 - L1PA3 LINE L1 -139 6022 5667 307 23 0 0 chr21 28588619 28588658 -6318912 + L1PA3 LINE L1 6113 6155 0 351 253 0 11 chr21 28589152 28589239 -6318331 + (TA)n Simple_repeat Simple_repeat 1 86 0 821 237 5 25 chr21 28589384 28589582 -6317988 - L1MC5 LINE L1 -1157 6804 6611 2236 121 3 0 chr21 28589599 28589905 -6317665 - AluSq SINE Alu 0 313 7 7503 29 5 0 chr21 28589975 28591046 -6316524 + L1PA4 LINE L1 5079 6153 -2 503 120 0 37 chr21 28591049 28591157 -6316413 + (TA)n Simple_repeat Simple_repeat 1 104 0 26 30 0 0 chr21 28591415 28591448 -6316122 + AT_rich Low_complexity Low_complexity 1 33 0 2321 148 41 39 chr21 28591448 28591961 -6315609 + MLT2A2 LTR ERVL 1 515 0 354 80 0 0 chr21 28595730 28595780 -6311790 + (TG)n Simple_repeat Simple_repeat 2 51 0 1743 154 0 79 chr21 28596986 28597304 -6310266 - AluJb SINE Alu -19 293 1 937 70 78 0 chr21 28598153 28598282 -6309288 - MER85 DNA T2_type 0 139 1 210 312 91 0 chr21 28599703 28599780 -6307790 - L2 LINE L2 -38 3275 3192 351 341 50 17 chr21 28600135 28600314 -6307256 + MIR SINE MIR 20 204 -58 720 109 83 113 chr21 28600337 28600567 -6307003 + L1MA7 LINE L1 6064 6286 -5 27 0 0 0 chr21 28600567 28600594 -6306976 + AT_rich Low_complexity Low_complexity 1 27 0 1529 214 116 3 chr21 28600977 28601313 -6306257 + MLT1A2 LTR MaLR 1 374 0 254 342 9 0 chr21 28601470 28601581 -6305989 + L2 LINE L2 2478 2589 -725 311 284 63 0 chr21 28602022 28602117 -6305453 + L2 LINE L2 3172 3272 0 405 129 35 21 chr21 28602750 28603099 -6304471 + (TA)n Simple_repeat Simple_repeat 1 354 0 959 132 25 59 chr21 28603234 28603438 -6304132 + MLT1C LTR MaLR 2 198 -269 676 271 28 0 chr21 28603489 28603670 -6303900 - MIR SINE MIR -41 221 36 2840 6 0 6 chr21 28604913 28605251 -6302319 - AluY SINE Alu 0 336 1 2692 26 0 0 chr21 28607140 28607448 -6300122 + AluY SINE Alu 1 308 -3 205 238 0 0 chr21 28608287 28608329 -6299241 + (TG)n Simple_repeat Simple_repeat 1 42 0 2092 119 6 10 chr21 28609406 28609718 -6297852 + AluSx SINE Alu 1 311 -1 480 219 84 19 chr21 28609997 28610152 -6297418 - MER113 DNA MER1_type? -207 314 150 2159 105 3 0 chr21 28610684 28610970 -6296600 + AluSp SINE Alu 1 287 -26 22 35 0 0 chr21 28611302 28611331 -6296239 + AT_rich Low_complexity Low_complexity 1 29 0 439 191 61 26 chr21 28611687 28611802 -6295768 + L2 LINE L2 3195 3313 0 24 0 0 0 chr21 28613161 28613185 -6294385 + AT_rich Low_complexity Low_complexity 1 24 0 669 258 125 72 chr21 28613794 28614507 -6293063 + L1MEd LINE L1 474 1224 -4895 1495 207 101 19 chr21 28616853 28617278 -6290292 - MLT1C LTR MaLR -3 464 5 27 0 0 0 chr21 28621590 28621617 -6285953 + AT_rich Low_complexity Low_complexity 1 27 0 527 187 0 8 chr21 28622989 28623112 -6284458 + (CTA)n Simple_repeat Simple_repeat 3 124 0 2672 130 9 13 chr21 28623115 28623548 -6284022 + LOR1a LTR ERV1 1 431 -66 2564 130 14 9 chr21 28623548 28623972 -6283598 + MSTB LTR MaLR 1 426 0 424 136 15 0 chr21 28623972 28624038 -6283532 + LOR1a LTR ERV1 431 497 0 716 200 6 0 chr21 28624087 28624262 -6283308 + (CTA)n Simple_repeat Simple_repeat 1 176 0 310 297 0 0 chr21 28624269 28624343 -6283227 + (CCA)n Simple_repeat Simple_repeat 3 76 0 226 304 0 89 chr21 28624817 28624929 -6282641 - MIR3 SINE MIR -102 106 5 1596 107 0 0 chr21 28624982 28625187 -6282383 - AluSc SINE Alu 0 309 105 359 136 0 0 chr21 28625187 28625246 -6282324 - AluSc SINE Alu -241 59 1 1633 203 4 0 chr21 28625347 28625671 -6281899 + AluJo SINE Alu 1 325 0 749 174 93 23 chr21 28626535 28626794 -6280776 - Charlie1a DNA MER1_type -77 1378 1102 299 209 0 0 chr21 28626861 28626928 -6280642 - AluJo SINE Alu 0 302 236 856 192 0 14 chr21 28626929 28627075 -6280495 - AluJo SINE Alu -168 144 1 3221 197 94 47 chr21 28627081 28628005 -6279565 - Charlie1a DNA MER1_type -487 968 1 2457 56 0 31 chr21 28628408 28628727 -6278843 - AluY SINE Alu -2 309 1 25 31 0 0 chr21 28629024 28629056 -6278514 + AT_rich Low_complexity Low_complexity 1 32 0 986 143 0 0 chr21 28629659 28629799 -6277771 - AluJb SINE Alu -15 297 158 202 194 0 0 chr21 28629950 28629986 -6277584 + (CATG)n Simple_repeat Simple_repeat 1 36 0 308 24 24 0 chr21 28629988 28630029 -6277541 + (CA)n Simple_repeat Simple_repeat 1 42 0 235 312 89 27 chr21 28631019 28631131 -6276439 - L2 LINE L2 -5 3267 3149 4944 156 21 49 chr21 28631771 28632073 -6275497 + L1MA8 LINE L1 5052 5361 -930 2054 148 0 0 chr21 28632073 28632371 -6275199 + AluSx SINE Alu 1 298 -14 4944 156 21 49 chr21 28632371 28632944 -6274626 + L1MA8 LINE L1 5361 5891 -400 1816 141 3 87 chr21 28632944 28633277 -6274293 - AluSx SINE Alu -7 305 1 4944 156 21 49 chr21 28633277 28633662 -6273908 + L1MA8 LINE L1 5891 6285 -6 399 330 38 26 chr21 28633699 28633963 -6273607 + MLT1H LTR MaLR 39 305 -244 287 289 29 46 chr21 28634088 28634261 -6273309 + MLT1H LTR MaLR 417 586 -4 259 217 33 0 chr21 28634834 28634894 -6272676 + L3 LINE CR1 1062 1123 -454 343 316 103 7 chr21 28635609 28635764 -6271806 + L1MC/D LINE L1 37 206 -6190 2443 276 69 58 chr21 28635770 28637534 -6270036 + L1MC/D LINE L1 251 2045 -4351 432 0 0 0 chr21 28637534 28637582 -6269988 + (CA)n Simple_repeat Simple_repeat 2 49 0 2443 276 69 58 chr21 28637582 28637945 -6269625 + L1MC/D LINE L1 2045 2402 -3994 343 225 105 29 chr21 28638009 28638218 -6269352 + L1MC/D LINE L1 3279 3503 -2712 1924 137 21 46 chr21 28638218 28638590 -6268980 + THE1B LTR MaLR 1 363 -1 9166 99 17 1 chr21 28638591 28639914 -6267656 + THE1B-int LTR MaLR 1 1345 -235 2055 264 45 36 chr21 28639913 28640885 -6266685 + L1MC/D LINE L1 4643 5624 -743 276 252 54 48 chr21 28640896 28641043 -6266527 + MER112 DNA MER1_type 113 260 0 922 27 0 0 chr21 28643592 28643704 -6263866 - L1PA4 LINE L1 -3 6152 6041 204 327 75 9 chr21 28644204 28644311 -6263259 - MIR SINE MIR -56 206 93 2215 81 0 37 chr21 28645343 28645639 -6261931 - AluY SINE Alu -26 285 1 28 0 0 0 chr21 28646195 28646223 -6261347 + AT_rich Low_complexity Low_complexity 1 28 0 2272 176 36 5 chr21 28646903 28647352 -6260218 + MLT1C LTR MaLR 1 463 -4 743 258 16 5 chr21 28648410 28648604 -6258966 - MER117 DNA MER1_type -1 196 1 2071 128 0 39 chr21 28648706 28649018 -6258552 + AluSx SINE Alu 1 300 -12 1709 203 21 10 chr21 28649748 28650137 -6257433 + MER50 LTR ERV1 342 734 0 948 252 46 55 chr21 28650548 28650964 -6256606 + MLT1C LTR MaLR 2 413 -54 1771 145 18 14 chr21 28651186 28651468 -6256102 + AluSq SINE Alu 17 299 -14 1142 66 0 7 chr21 28651602 28651739 -6255831 + AluSq SINE Alu 1 136 -177 631 168 59 0 chr21 28651749 28651868 -6255702 + L1PA8 LINE L1 6040 6165 -7 258 100 0 10 chr21 28651907 28652047 -6255523 + AluSq SINE Alu 121 303 0 360 266 23 8 chr21 28652165 28652293 -6255277 + (TA)n Simple_repeat Simple_repeat 2 131 0 504 0 0 0 chr21 28654593 28654649 -6252921 + (TG)n Simple_repeat Simple_repeat 1 56 0 2043 118 4 0 chr21 28654649 28654928 -6252642 - AluSp SINE Alu -33 280 1 216 0 0 0 chr21 28655192 28655216 -6252354 + (CA)n Simple_repeat Simple_repeat 2 25 0 248 276 51 61 chr21 28655358 28655456 -6252114 - L2 LINE L2 -22 3250 3154 2348 104 0 3 chr21 28655619 28655926 -6251644 - AluSp SINE Alu -7 306 1 427 285 61 11 chr21 28655927 28656135 -6251435 + MIR SINE MIR 9 262 0 3126 88 20 16 chr21 28656597 28657039 -6250531 + MLT2A1 LTR ERVL 1 444 0 193 254 48 16 chr21 28657099 28657162 -6250408 + MIR SINE MIR 82 146 -62 507 248 34 13 chr21 28657563 28657712 -6249858 + Tigger2a DNA MER2_type 1 152 -282 439 91 45 0 chr21 28657714 28657780 -6249790 + Tigger2a DNA MER2_type 116 184 -260 304 75 0 0 chr21 28657780 28657820 -6249750 + Tigger2a DNA MER2_type 123 162 -282 371 82 0 0 chr21 28657820 28657869 -6249701 + Tigger2a DNA MER2_type 114 162 -282 1548 168 48 3 chr21 28657869 28658184 -6249386 + Tigger2a DNA MER2_type 114 442 -2 1439 212 100 54 chr21 28658185 28658276 -6249294 - MLT1D LTR MaLR -1 504 419 1944 130 21 11 chr21 28658276 28658560 -6249010 + AluSx SINE Alu 1 287 -25 242 29 29 0 chr21 28658564 28658599 -6248971 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 1439 212 100 54 chr21 28658599 28658984 -6248586 - MLT1D LTR MaLR -88 417 1 479 286 84 6 chr21 28659098 28659276 -6248294 - MIR SINE MIR -56 206 15 2144 103 34 0 chr21 28659435 28659726 -6247844 + AluY SINE Alu 1 301 -10 486 132 11 11 chr21 28661778 28661869 -6245701 + L1PA15 LINE L1 6068 6158 -7 836 209 0 15 chr21 28661921 28662122 -6245448 - L1M4 LINE L1 -1175 4971 4774 2140 162 52 27 chr21 28662122 28662530 -6245040 + MER47B DNA MER2_type 1 418 0 536 253 47 24 chr21 28663015 28663185 -6244385 - MER45A DNA AcHobo 0 178 5 526 321 42 13 chr21 28663740 28663927 -6243643 - MIR SINE MIR 0 262 65 2220 114 3 0 chr21 28663927 28664235 -6243335 + AluSq SINE Alu 1 309 -4 526 321 42 13 chr21 28664235 28664284 -6243286 - MIR SINE MIR -197 65 19 217 245 138 11 chr21 28664426 28664520 -6243050 + MIR3 SINE MIR 1 106 -102 381 286 16 40 chr21 28664650 28664776 -6242794 + L2 LINE L2 3191 3313 0 217 216 62 124 chr21 28665203 28665300 -6242270 + MER91B DNA MER1_type 35 125 -65 704 265 40 15 chr21 28665412 28665612 -6241958 + MIR SINE MIR 58 262 0 2048 122 71 37 chr21 28665964 28666316 -6241254 - THE1B LTR MaLR 0 364 1 187 278 202 69 chr21 28666827 28667000 -6240570 + MIR SINE MIR 29 224 -38 233 266 202 69 chr21 28667050 28667223 -6240347 + MIR SINE MIR 29 224 -38 200 241 35 0 chr21 28668581 28668639 -6238931 + (TATATG)n Simple_repeat Simple_repeat 3 62 0 57 28 0 0 chr21 28668706 28668777 -6238793 + AT_rich Low_complexity Low_complexity 1 71 0 2221 102 26 7 chr21 28668865 28669168 -6238402 - AluSg SINE Alu -1 309 1 272 270 61 52 chr21 28670981 28671096 -6236474 - MIR3 SINE MIR -4 204 89 1382 217 3 3 chr21 28671352 28671638 -6235932 - MLT1A1 LTR MaLR -79 286 1 2108 234 19 11 chr21 28674457 28674928 -6232642 + MLT2B3 LTR ERVL 1 475 -79 203 195 52 13 chr21 28674935 28675012 -6232558 + (CAAT)n Simple_repeat Simple_repeat 2 81 0 1657 210 46 52 chr21 28675198 28675698 -6231872 - MLT1D LTR MaLR -8 497 1 937 76 0 8 chr21 28678143 28678274 -6229296 - MER85 DNA T2_type -9 130 1 279 0 0 0 chr21 28678596 28678627 -6228943 + (CA)n Simple_repeat Simple_repeat 2 32 0 468 0 0 0 chr21 28679399 28679451 -6228119 + (TG)n Simple_repeat Simple_repeat 1 52 0 2128 135 0 6 chr21 28681843 28682155 -6225415 + AluSx SINE Alu 1 310 -2 322 85 34 0 chr21 28682165 28682224 -6225346 + (TAGA)n Simple_repeat Simple_repeat 3 63 0 1042 37 30 0 chr21 28682325 28682460 -6225110 + L1PA4 LINE L1 6017 6155 0 27 0 0 0 chr21 28682476 28682503 -6225067 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr21 28682632 28682662 -6224908 + AT_rich Low_complexity Low_complexity 1 30 0 243 378 78 0 chr21 28682687 28682880 -6224690 + HAL1b LINE L1 400 607 -741 1904 161 3 3 chr21 28683588 28683920 -6223650 + AluJb SINE Alu 1 332 0 309 343 75 36 chr21 28684755 28685061 -6222509 + L1 LINE L1 2963 3280 -2866 350 306 85 41 chr21 28685327 28685598 -6221972 + L1MC4a LINE L1 2982 3264 -2882 2523 73 15 0 chr21 28686317 28686646 -6220924 + L1PA10 LINE L1 5824 6157 -11 26 0 0 0 chr21 28686675 28686701 -6220869 + AT_rich Low_complexity Low_complexity 1 26 0 683 333 44 10 chr21 28686971 28687490 -6220080 + L1MC4a LINE L1 5291 5827 -1981 231 263 18 0 chr21 28687816 28687873 -6219697 - MIR SINE MIR -89 119 62 1293 212 77 62 chr21 28687918 28688414 -6219156 + MLT1D LTR MaLR 1 503 -2 513 310 38 11 chr21 28688612 28688796 -6218774 + MER5A DNA MER1_type 1 189 0 384 290 103 7 chr21 28688844 28688989 -6218581 + MER5B DNA MER1_type 20 178 0 575 261 99 12 chr21 28688997 28689158 -6218412 - MER5B DNA MER1_type 0 178 4 329 182 26 0 chr21 28689410 28689487 -6218083 + MER116 DNA Mariner 2 80 0 262 275 123 29 chr21 28690403 28690541 -6217029 + L2 LINE L2 2161 2311 -1003 472 343 68 26 chr21 28690908 28691102 -6216468 + L2 LINE L2 2454 2638 -675 2149 136 0 0 chr21 28691102 28691397 -6216173 - AluSc SINE Alu -14 295 1 472 343 68 26 chr21 28691397 28691767 -6215803 + L2 LINE L2 2638 3074 -239 188 222 0 44 chr21 28691787 28691832 -6215738 - MIR SINE MIR -129 133 91 1235 114 95 0 chr21 28691909 28692119 -6215451 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr21 28692238 28692259 -6215311 + AT_rich Low_complexity Low_complexity 1 21 0 519 342 92 36 chr21 28692742 28693099 -6214471 - L3 LINE CR1 -10 1567 1191 2056 115 1 88 chr21 28694162 28694700 -6212870 + MER4A LTR ERV1 1 462 -3 221 151 38 19 chr21 28694725 28694778 -6212792 + GA-rich Low_complexity Low_complexity 2 55 0 327 290 108 43 chr21 28695161 28695533 -6212037 + HAL1 LINE L1 1151 1546 -961 463 297 26 0 chr21 28695604 28695759 -6211811 + HAL1 LINE L1 1650 1808 -699 21 0 0 0 chr21 28696485 28696506 -6211064 + AT_rich Low_complexity Low_complexity 1 21 0 1748 167 3 11 chr21 28696923 28697210 -6210360 - AluJb SINE Alu -25 287 3 546 298 16 11 chr21 28697856 28698047 -6209523 - MIR SINE MIR -43 219 28 2186 38 0 0 chr21 28698155 28698417 -6209153 - L1PA5 LINE L1 -3 6151 5890 1621 204 63 0 chr21 28699978 28700345 -6207225 + MLT1B LTR MaLR 1 390 0 2221 97 0 3 chr21 28700369 28700657 -6206913 + AluSx SINE Alu 1 287 -25 26 0 0 0 chr21 28700657 28700683 -6206887 + AT_rich Low_complexity Low_complexity 1 26 0 2027 88 0 15 chr21 28701942 28702225 -6205345 + AluSg SINE Alu 34 310 0 270 297 94 64 chr21 28702599 28702817 -6204753 + MIR SINE MIR 20 236 -26 1580 256 41 48 chr21 28704208 28704818 -6202752 - L1ME3A LINE L1 -5 6165 5560 1813 159 21 3 chr21 28705090 28705417 -6202153 - MER44D DNA MER2_type 0 609 7 360 306 68 7 chr21 28705442 28705589 -6201981 - MIR SINE MIR -29 233 78 2600 98 14 0 chr21 28705770 28706129 -6201441 - THE1B LTR MaLR 0 364 1 508 114 2 20 chr21 28707358 28707457 -6200113 + MSTC LTR MaLR 233 363 -64 1803 76 0 4 chr21 28707566 28707791 -6199779 + AluY SINE Alu 1 224 -87 831 75 0 50 chr21 28707791 28707911 -6199659 + AluY SINE Alu 191 304 -7 25 0 0 0 chr21 28708808 28708833 -6198737 + AT_rich Low_complexity Low_complexity 1 25 0 490 198 0 9 chr21 28710833 28710949 -6196621 + LTR37A LTR ERV1 288 402 -24 2646 19 6 13 chr21 28711588 28711900 -6195670 - AluY SINE Alu -1 310 1 38 39 0 0 chr21 28711978 28712030 -6195540 + AT_rich Low_complexity Low_complexity 1 52 0 194 108 54 0 chr21 28712169 28712206 -6195364 + (CATA)n Simple_repeat Simple_repeat 3 41 0 253 259 0 0 chr21 28712785 28712843 -6194727 + GA-rich Low_complexity Low_complexity 3 60 0 264 200 0 0 chr21 28712844 28712904 -6194666 + G-rich Low_complexity Low_complexity 4 63 0 336 48 0 0 chr21 28713591 28713633 -6193937 + (TC)n Simple_repeat Simple_repeat 2 43 0 381 93 0 0 chr21 28713632 28713686 -6193884 + (TG)n Simple_repeat Simple_repeat 1 54 0 288 0 0 0 chr21 28713685 28713717 -6193853 + (GA)n Simple_repeat Simple_repeat 1 32 0 281 379 31 9 chr21 28713812 28714039 -6193531 - L2 LINE L2 -462 2852 2621 210 307 34 11 chr21 28714142 28714230 -6193340 - L2 LINE L2 -848 2466 2377 296 256 105 0 chr21 28714369 28714455 -6193115 - MER5A DNA MER1_type -85 104 10 1435 209 59 57 chr21 28715434 28715851 -6191719 + MLT2C2 LTR ERVL 1 421 -43 2779 10 0 3 chr21 28715851 28716160 -6191410 + AluYa5 SINE Alu 1 308 -3 1435 209 59 57 chr21 28716160 28716197 -6191373 + MLT2C2 LTR ERVL 421 456 -8 2589 112 0 6 chr21 28716284 28716650 -6190920 - THE1B LTR MaLR 0 364 1 971 312 43 67 chr21 28717553 28718476 -6189094 + L2 LINE L2 2411 3312 -1 1319 282 69 43 chr21 28718762 28719938 -6187632 + L1MA8 LINE L1 1042 2185 -4199 2408 93 0 3 chr21 28719938 28720238 -6187332 + AluSq SINE Alu 1 299 -14 219 69 0 0 chr21 28720238 28720267 -6187303 + (TA)n Simple_repeat Simple_repeat 1 29 0 1319 282 69 43 chr21 28720267 28720690 -6186880 + L1MA8 LINE L1 2184 2496 -3888 7588 162 37 7 chr21 28720703 28724121 -6183449 + L1MA8 LINE L1 2969 6527 0 379 348 31 12 chr21 28724609 28724770 -6182800 + MIR SINE MIR 70 233 -29 309 106 15 30 chr21 28724939 28725005 -6182565 + (TA)n Simple_repeat Simple_repeat 1 65 0 350 219 0 62 chr21 28725015 28725111 -6182459 + L1MC4 LINE L1 6614 6703 -1339 405 86 0 0 chr21 28725120 28725178 -6182392 + (TA)n Simple_repeat Simple_repeat 1 58 0 2210 114 0 25 chr21 28726129 28726444 -6181126 - AluSc SINE Alu -2 307 1 460 267 75 6 chr21 28727158 28727319 -6180251 - LTR33 LTR ERVL -348 173 2 671 168 67 17 chr21 28727447 28727626 -6179944 + MER53 DNA DNA 1 188 -1 2326 86 3 7 chr21 28727948 28728251 -6179319 - AluSp SINE Alu -11 302 1 1226 215 62 50 chr21 28728360 28728715 -6178855 + Charlie4a DNA MER1_type 1 365 -1596 1823 223 38 40 chr21 28728715 28729221 -6178349 - MLT1D LTR MaLR 0 505 1 1226 215 62 50 chr21 28729221 28729362 -6178208 + Charlie4a DNA MER1_type 365 503 -5 305 317 76 21 chr21 28729436 28729581 -6177989 - MIR SINE MIR -57 205 53 305 194 0 14 chr21 28730503 28730575 -6176995 + GA-rich Low_complexity Low_complexity 3 73 0 2151 121 0 10 chr21 28733355 28733668 -6173902 + AluSg SINE Alu 1 310 0 1913 128 28 17 chr21 28733867 28734157 -6173413 + AluJb SINE Alu 1 293 -19 214 205 0 0 chr21 28734904 28734943 -6172627 + (TTA)n Simple_repeat Simple_repeat 2 40 0 1495 170 7 70 chr21 28734946 28735093 -6172477 - AluJo SINE Alu -31 281 161 450 0 0 0 chr21 28735093 28735143 -6172427 + (TA)n Simple_repeat Simple_repeat 2 51 0 1495 170 7 70 chr21 28735143 28735295 -6172275 - AluJo SINE Alu -151 161 1 2113 109 0 7 chr21 28736201 28736494 -6171076 + AluSc SINE Alu 1 291 -18 289 206 0 27 chr21 28736789 28736862 -6170708 - LTR44 LTR ERV1 0 519 449 1955 176 131 2 chr21 28736862 28737289 -6170281 - LTR44 LTR ERV1 -37 482 1 2600 47 0 0 chr21 28738068 28738369 -6169201 + AluY SINE Alu 1 301 -10 2215 80 0 3 chr21 28739245 28739533 -6168037 - AluSp SINE Alu 0 313 27 2186 184 39 2 chr21 28739718 28740116 -6167454 - MSTB1 LTR MaLR 0 432 5 201 39 0 0 chr21 28740215 28740241 -6167329 + (CAA)n Simple_repeat Simple_repeat 2 27 0 691 272 8 60 chr21 28741652 28741917 -6165653 - L1MC4 LINE L1 -30 8012 7762 24 0 0 0 chr21 28742540 28742564 -6165006 + AT_rich Low_complexity Low_complexity 1 24 0 318 275 0 11 chr21 28743247 28743338 -6164232 - L1MC4 LINE L1 -1341 6701 6612 305 218 22 28 chr21 28743338 28743517 -6164053 + (TA)n Simple_repeat Simple_repeat 1 178 0 272 263 17 6 chr21 28743554 28743729 -6163841 + (TA)n Simple_repeat Simple_repeat 1 177 0 473 167 10 0 chr21 28743702 28743804 -6163766 + (CA)n Simple_repeat Simple_repeat 2 104 0 214 289 72 12 chr21 28743859 28743942 -6163628 + MIR3 SINE MIR 116 203 -5 673 19 106 0 chr21 28744717 28744877 -6162693 + (TA)n Simple_repeat Simple_repeat 1 177 0 242 136 0 0 chr21 28744887 28744931 -6162639 - L1MC4 LINE L1 -1340 6702 6659 303 322 0 0 chr21 28744932 28745022 -6162548 - L1MC4 LINE L1 -1339 6703 6614 239 152 43 0 chr21 28745028 28745074 -6162496 + LTR66 LTR ERVL 172 219 -391 1872 198 15 3 chr21 28745140 28745478 -6162092 - MER7A DNA MER2_type -6 340 1 750 183 47 48 chr21 28745552 28745708 -6161862 + MLT2C1 LTR ERVL 1 156 -241 1866 168 79 6 chr21 28745708 28746048 -6161522 + MLT1A1 LTR MaLR 1 365 0 750 183 47 48 chr21 28746048 28746188 -6161382 + MLT2C1 LTR ERVL 156 349 -48 219 69 0 0 chr21 28746209 28746238 -6161332 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr21 28746796 28746819 -6160751 + AT_rich Low_complexity Low_complexity 1 23 0 2373 91 0 10 chr21 28746885 28747192 -6160378 + AluSg SINE Alu 1 304 -6 342 98 0 49 chr21 28747293 28747354 -6160216 + L1MA4A LINE L1 6245 6302 -1 929 155 0 31 chr21 28747450 28747611 -6159959 + MER20 DNA MER1_type 1 156 -63 1955 129 12 21 chr21 28747611 28747985 -6159585 - L1M2 LINE L1 -641 5659 5254 1886 164 77 3 chr21 28747990 28748356 -6159214 + L1MA6 LINE L1 5901 6293 -7 21 0 0 0 chr21 28748357 28748378 -6159192 + AT_rich Low_complexity Low_complexity 1 21 0 364 151 12 128 chr21 28748378 28748464 -6159106 + MER20 DNA MER1_type 144 219 0 4369 153 31 69 chr21 28749512 28750151 -6157419 + LTR1 LTR ERV1 1 604 -181 219 36 0 0 chr21 28750151 28750179 -6157391 + (CA)n Simple_repeat Simple_repeat 2 29 0 4369 153 31 69 chr21 28750179 28750355 -6157215 + LTR1 LTR ERV1 604 785 0 180 0 0 0 chr21 28750478 28750498 -6157072 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2344 102 0 3 chr21 28751087 28751390 -6156180 + AluSg SINE Alu 1 302 -8 529 214 0 0 chr21 28753055 28753158 -6154412 + L1MA9 LINE L1 6185 6287 -25 969 254 71 37 chr21 28753760 28754083 -6153487 + MLT1H LTR MaLR 216 549 0 2228 91 27 3 chr21 28755257 28755554 -6152016 - AluY SINE Alu -7 304 1 756 42 0 0 chr21 28757238 28757334 -6150236 + (TCCA)n Simple_repeat Simple_repeat 1 96 0 378 0 0 0 chr21 28759227 28759269 -6148301 + (TG)n Simple_repeat Simple_repeat 1 42 0 1248 107 3 0 chr21 28759770 28760136 -6147434 + (TCCA)n Simple_repeat Simple_repeat 1 367 0 585 286 42 34 chr21 28761387 28761625 -6145945 + MIR SINE MIR 17 256 -6 434 281 33 46 chr21 28761938 28762091 -6145479 - L2 LINE L2 0 3272 3122 596 159 9 19 chr21 28762575 28762682 -6144888 + MLT1C LTR MaLR 1 106 -361 2517 46 0 16 chr21 28762759 28763064 -6144506 - AluY SINE Alu -11 300 1 1174 187 76 1 chr21 28763860 28764245 -6143325 + MLT1C LTR MaLR 27 463 -4 2300 63 40 13 chr21 28765581 28765884 -6141686 + AluY SINE Alu 1 311 0 591 189 0 47 chr21 28767243 28767370 -6140200 - FLAM_A SINE Alu -4 138 18 1672 200 11 32 chr21 28768756 28769126 -6138444 + MLT1A1 LTR MaLR 1 362 -3 31 68 0 0 chr21 28770190 28770249 -6137321 + AT_rich Low_complexity Low_complexity 1 59 0 1789 204 71 30 chr21 28770675 28771111 -6136459 + MLT1C LTR MaLR 6 459 -8 1450 193 34 59 chr21 28771327 28771684 -6135886 + MLT1A1 LTR MaLR 15 362 -3 197 186 34 51 chr21 28771923 28771982 -6135588 + MIR SINE MIR 84 141 -67 344 273 67 47 chr21 28772742 28772892 -6134678 + MIR SINE MIR 9 161 -101 29 47 0 0 chr21 28774861 28774904 -6132666 + AT_rich Low_complexity Low_complexity 1 43 0 1678 147 66 4 chr21 28775281 28775554 -6132016 + AluJb SINE Alu 1 290 -22 2166 117 0 0 chr21 28776601 28776892 -6130678 + AluSx SINE Alu 1 291 -21 1761 147 43 78 chr21 28777031 28777411 -6130159 - MER57A LTR ERV1 0 403 36 4936 149 34 54 chr21 28777411 28778333 -6129237 - MER4D LTR ERV1 0 903 1 1761 147 43 78 chr21 28778333 28778347 -6129223 - MER57A LTR ERV1 -367 36 23 2277 110 0 0 chr21 28778392 28778683 -6128887 + AluSg SINE Alu 1 291 -19 378 256 8 58 chr21 28780159 28780280 -6127290 - MIR3 SINE MIR 0 208 94 891 167 36 54 chr21 28780368 28780536 -6127034 - FAM SINE Alu -10 165 1 22 0 0 0 chr21 28781023 28781045 -6126525 + AT_rich Low_complexity Low_complexity 1 22 0 359 352 70 0 chr21 28781240 28781382 -6126188 + L2 LINE L2 3121 3272 0 243 326 116 0 chr21 28781488 28781583 -6125987 - MIR SINE MIR -109 153 48 1442 201 0 26 chr21 28781984 28782287 -6125283 - AluJo SINE Alu -7 305 11 2706 132 41 16 chr21 28782556 28782807 -6124763 - Tigger2 DNA MER2_type -1 2717 2449 2296 184 41 9 chr21 28782807 28783226 -6124344 - MSTB1 LTR MaLR 0 432 1 2706 132 41 16 chr21 28783226 28783414 -6124156 - Tigger2 DNA MER2_type -269 2449 2267 481 145 0 0 chr21 28783398 28783467 -6124103 - Tigger2 DNA MER2_type -2649 69 1 1583 194 77 70 chr21 28783482 28783702 -6123868 + MSTB1 LTR MaLR 1 227 -205 2058 103 65 0 chr21 28783702 28783993 -6123577 - AluY SINE Alu -1 310 1 1583 194 77 70 chr21 28783993 28784199 -6123371 + MSTB1 LTR MaLR 227 430 -2 2081 69 0 8 chr21 28784565 28784825 -6122745 + AluY SINE Alu 43 300 -11 2273 83 0 3 chr21 28785535 28785835 -6121735 + AluY SINE Alu 1 299 -12 2602 46 0 3 chr21 28786145 28786451 -6121119 - AluY SINE Alu -6 305 1 2355 168 7 44 chr21 28786891 28787319 -6120251 - MER47B DNA MER2_type -6 412 1 1649 153 57 42 chr21 28788475 28788828 -6118742 + THE1C LTR MaLR 1 358 -17 314 111 0 19 chr21 28789318 28789372 -6118198 - L1PA16 LINE L1 0 6166 6114 326 312 18 0 chr21 28789528 28789637 -6117933 - MER81 DNA DNA -1 113 3 207 196 0 0 chr21 28789804 28789850 -6117720 + (TA)n Simple_repeat Simple_repeat 1 46 0 510 227 3 0 chr21 28789877 28790231 -6117339 + (TA)n Simple_repeat Simple_repeat 1 355 0 202 269 134 0 chr21 28793164 28793231 -6114339 - L2 LINE L2 0 3313 3238 491 189 19 9 chr21 28793503 28793609 -6113961 + ORSL DNA AcHobo 169 275 0 315 305 17 59 chr21 28794032 28794150 -6113420 + L2 LINE L2 3134 3246 -26 624 135 0 0 chr21 28794291 28794395 -6113175 - AluSg/x SINE Alu -7 302 199 21 0 0 0 chr21 28795052 28795073 -6112497 + AT_rich Low_complexity Low_complexity 1 21 0 1303 191 2 112 chr21 28795616 28796062 -6111508 + MLT2C1 LTR ERVL 1 397 0 34 0 0 0 chr21 28796212 28796246 -6111324 + AT_rich Low_complexity Low_complexity 1 34 0 400 235 86 63 chr21 28796701 28796956 -6110614 + L1ME2 LINE L1 1167 1427 -4996 352 270 70 15 chr21 28797100 28797516 -6110054 + L1ME2 LINE L1 1588 2221 -4882 575 249 0 0 chr21 28797647 28797812 -6109758 + L1MA4 LINE L1 6134 6298 -2 262 326 32 11 chr21 28797808 28797995 -6109575 + L1ME2 LINE L1 2203 2393 -4550 264 178 0 0 chr21 28798077 28798122 -6109448 + MER46A DNA MER2_type 2 46 -190 977 105 0 0 chr21 28798124 28798248 -6109322 - AluSq/x SINE Alu -189 124 1 836 154 66 33 chr21 28798248 28798430 -6109140 + MER46A DNA MER2_type 46 233 -3 411 38 0 0 chr21 28798431 28798484 -6109086 + (TG)n Simple_repeat Simple_repeat 2 54 0 3285 268 57 30 chr21 28798836 28799441 -6108129 + L1ME2 LINE L1 2999 3586 -3355 2206 66 0 4 chr21 28799441 28799715 -6107855 + AluY SINE Alu 28 300 -11 3285 268 57 30 chr21 28799715 28801012 -6106558 + L1ME2 LINE L1 3586 4952 -1989 1176 119 6 0 chr21 28801065 28801233 -6106337 - AluSg/x SINE Alu -10 300 132 3303 67 11 5 chr21 28801322 28801767 -6105803 + LTR7 LTR ERV1 1 448 -2 264 177 16 0 chr21 28801775 28801837 -6105733 + L1ME2 LINE L1 5552 5614 -1327 1306 224 119 13 chr21 28802118 28802573 -6104997 + L1ME2 LINE L1 6053 6555 -404 533 272 62 56 chr21 28802589 28802927 -6104643 + L1ME2 LINE L1 6610 6949 -10 21 36 0 0 chr21 28803033 28803061 -6104509 + AT_rich Low_complexity Low_complexity 1 28 0 336 169 78 0 chr21 28803281 28803358 -6104212 + L1PA7 LINE L1 6069 6151 -3 24 32 0 0 chr21 28803424 28803455 -6104115 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 28803594 28803616 -6103954 + AT_rich Low_complexity Low_complexity 1 22 0 1841 71 11 19 chr21 28803640 28803906 -6103664 - HERVS71 LTR ERV1 -8714 264 1 4054 51 59 0 chr21 28803906 28804433 -6103137 - LTR6B LTR ERV1 0 558 1 2659 87 0 100 chr21 28804644 28805136 -6102434 + LTR12 LTR ERV1 16 671 0 26 0 0 0 chr21 28805588 28805614 -6101956 + AT_rich Low_complexity Low_complexity 1 26 0 338 312 36 0 chr21 28806056 28806168 -6101402 + HAL1 LINE L1 1553 1668 -839 1196 63 0 0 chr21 28806439 28806582 -6100988 - AluY SINE Alu -11 300 158 2140 99 0 23 chr21 28806608 28806911 -6100659 + AluSx SINE Alu 1 296 -16 318 374 7 20 chr21 28807757 28807904 -6099666 - MIR3 SINE MIR -62 146 2 1228 168 18 0 chr21 28810051 28810271 -6097299 + L1MC1 LINE L1 6110 6333 0 187 277 0 31 chr21 28811083 28811148 -6096422 + MER5A DNA MER1_type 104 166 -23 2160 181 11 45 chr21 28811167 28811608 -6095962 + MSTB LTR MaLR 1 426 0 1019 24 0 16 chr21 28811682 28811808 -6095762 + AluYa5/8 SINE Alu 187 310 0 2082 178 16 53 chr21 28811984 28812212 -6095358 + MSTB1 LTR MaLR 1 205 -227 2168 142 0 0 chr21 28812212 28812515 -6095055 - AluSq SINE Alu -10 303 1 2082 178 16 53 chr21 28812515 28812735 -6094835 + MSTB1 LTR MaLR 205 432 0 453 232 216 0 chr21 28812867 28812992 -6094578 - MER5A DNA MER1_type 0 189 38 24 67 0 0 chr21 28813388 28813433 -6094137 + AT_rich Low_complexity Low_complexity 1 45 0 406 130 52 13 chr21 28814598 28814675 -6092895 - MADE1 DNA Mariner 0 80 1 2350 111 0 0 chr21 28815657 28815964 -6091606 + AluSg SINE Alu 4 310 0 258 150 0 0 chr21 28817248 28817288 -6090282 - MLT1A1 LTR MaLR 0 374 335 1586 133 32 64 chr21 28817293 28817638 -6089932 + THE1C LTR MaLR 1 334 -41 354 137 39 12 chr21 28817641 28817727 -6089843 - MLT1A1 LTR MaLR -26 370 258 251 364 0 25 chr21 28818203 28818324 -6089246 - MIR SINE MIR -101 161 44 348 261 155 80 chr21 28818859 28819285 -6088285 + L2 LINE L2 2856 3313 0 23 0 0 0 chr21 28819528 28819551 -6088019 + AT_rich Low_complexity Low_complexity 1 23 0 1930 142 0 60 chr21 28819673 28820004 -6087566 - AluSx SINE Alu -1 311 1 471 340 47 22 chr21 28820718 28820950 -6086620 + MIR SINE MIR 11 248 -14 2028 141 0 0 chr21 28821471 28821755 -6085815 + AluJb SINE Alu 18 301 -11 235 161 36 0 chr21 28821762 28821818 -6085752 + GA-rich Low_complexity Low_complexity 3 60 0 21 0 0 0 chr21 28823301 28823322 -6084248 + AT_rich Low_complexity Low_complexity 1 21 0 2101 129 0 16 chr21 28823859 28824170 -6083400 - AluSx SINE Alu -6 306 1 480 222 7 37 chr21 28824170 28824305 -6083265 - L1MC2 LINE L1 -22 6740 6610 2986 216 66 24 chr21 28824308 28824856 -6082714 - L1MC2 LINE L1 -187 6575 5959 2387 92 0 3 chr21 28824856 28825161 -6082409 - AluSc SINE Alu -5 304 1 2986 216 66 24 chr21 28825161 28825557 -6082013 - L1MC2 LINE L1 -803 5959 5581 1675 91 0 17 chr21 28825559 28825800 -6081770 - L1PA8 LINE L1 0 6172 5936 4531 98 11 3 chr21 28825800 28826517 -6081053 + L1P LINE L1 2971 3693 -2453 7265 251 27 31 chr21 28826512 28826547 -6081023 - L1MC2 LINE L1 -973 5591 5557 1863 178 64 0 chr21 28826547 28826890 -6080680 - MLT1A1 LTR MaLR 0 365 1 7265 251 27 31 chr21 28826890 28828412 -6079158 - L1MC2 LINE L1 -1007 5557 4046 1735 180 3 3 chr21 28828412 28828707 -6078863 - AluJb SINE Alu -5 307 13 7265 251 27 31 chr21 28828707 28829820 -6077750 - L1MC2 LINE L1 -2518 4046 2930 3469 221 47 25 chr21 28829830 28830068 -6077502 - L1MC2 LINE L1 -4499 2065 1834 198 103 0 0 chr21 28830068 28830097 -6077473 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3469 221 47 25 chr21 28830097 28831780 -6075790 - L1MC2 LINE L1 -4730 1834 12 907 259 5 9 chr21 28831806 28832026 -6075544 - MER58A DNA MER1_type -5 219 1 2325 113 7 0 chr21 28832149 28832458 -6075112 - AluSx SINE Alu -1 311 1 447 222 46 26 chr21 28832690 28832843 -6074727 - Charlie8 DNA MER1_type -2215 202 47 181 291 0 0 chr21 28832941 28832996 -6074574 - MIR SINE MIR -143 119 65 2084 110 49 23 chr21 28833111 28833456 -6074114 + THE1B LTR MaLR 1 354 -10 180 0 0 0 chr21 28833756 28833776 -6073794 + (T)n Simple_repeat Simple_repeat 1 20 0 2152 104 35 41 chr21 28833858 28834224 -6073346 + THE1B LTR MaLR 1 364 0 22 35 0 0 chr21 28834633 28834662 -6072908 + AT_rich Low_complexity Low_complexity 1 29 0 1786 168 0 0 chr21 28835324 28835610 -6071960 - AluJb SINE Alu -26 286 1 283 191 130 53 chr21 28837154 28837285 -6070285 + MER103 DNA DNA 25 165 -1 378 188 35 0 chr21 28837325 28837410 -6070160 - MER33 DNA MER1_type -14 310 223 2177 110 0 3 chr21 28837413 28837712 -6069858 - AluSc SINE Alu -11 298 1 308 265 36 0 chr21 28837854 28837937 -6069633 - MER33 DNA MER1_type -238 86 1 410 285 62 7 chr21 28838031 28838175 -6069395 - L2 LINE L2 -1 3312 3161 193 327 0 0 chr21 28838222 28838274 -6069296 - L2 LINE L2 -257 3056 3005 220 162 59 59 chr21 28838446 28838514 -6069056 - L2 LINE L2 -536 2778 2711 508 307 79 25 chr21 28838531 28838772 -6068798 + MLT1G LTR MaLR 15 268 -322 267 274 29 10 chr21 28841256 28841358 -6066212 + (TA)n Simple_repeat Simple_repeat 1 104 0 2045 104 76 0 chr21 28841377 28841665 -6065905 + AluSx SINE Alu 1 310 -2 242 237 0 53 chr21 28841684 28841760 -6065810 + L1ME4a LINE L1 5984 6055 -66 21 36 0 0 chr21 28842184 28842212 -6065358 + AT_rich Low_complexity Low_complexity 1 28 0 621 325 64 20 chr21 28842792 28843087 -6064483 + MER77 LTR ERV1 279 586 -19 2688 23 0 0 chr21 28843091 28843392 -6064178 + AluYa5 SINE Alu 1 301 -10 2627 43 0 3 chr21 28843475 28843779 -6063791 - AluY SINE Alu -8 303 1 797 275 38 5 chr21 28843915 28844126 -6063444 - MER20 DNA MER1_type -1 218 1 26 93 0 0 chr21 28845602 28845677 -6061893 + AT_rich Low_complexity Low_complexity 1 75 0 364 220 57 14 chr21 28846149 28846290 -6061280 + L1ME1 LINE L1 5324 5470 -696 313 193 0 24 chr21 28846290 28846373 -6061197 + GA-rich Low_complexity Low_complexity 4 84 0 793 115 0 58 chr21 28846375 28846566 -6061004 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 814 173 32 7 chr21 28846582 28846864 -6060706 + GA-rich Low_complexity Low_complexity 1 289 0 243 61 0 0 chr21 28846864 28846897 -6060673 + (CAGG)n Simple_repeat Simple_repeat 2 34 0 872 239 95 23 chr21 28846969 28847593 -6059977 + L1ME1 LINE L1 5485 6164 0 311 196 10 29 chr21 28848230 28848332 -6059238 + GA-rich Low_complexity Low_complexity 3 102 0 996 206 130 37 chr21 28848637 28848991 -6058579 + LTR37A LTR ERV1 1 387 -39 281 280 35 56 chr21 28851986 28852129 -6055441 + L2 LINE L2 1566 1705 -1609 618 293 82 69 chr21 28852543 28852994 -6054576 + L2 LINE L2 2448 2904 -410 236 330 97 19 chr21 28853071 28853174 -6054396 + L2 LINE L2 3192 3302 -11 286 302 42 42 chr21 28853421 28853540 -6054030 + L2 LINE L2 3153 3271 -1 357 318 9 0 chr21 28854594 28854704 -6052866 + MIR SINE MIR 12 122 -140 250 224 235 0 chr21 28854716 28854801 -6052769 + MIR SINE MIR 96 200 -62 1000 244 5 0 chr21 28854803 28855000 -6052570 + MER58A DNA MER1_type 27 224 0 522 0 0 0 chr21 28855048 28855106 -6052464 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 1459 168 12 8 chr21 28855106 28855362 -6052208 - AluJb SINE Alu -15 297 41 571 26 13 13 chr21 28855397 28855475 -6052095 + (TG)n Simple_repeat Simple_repeat 1 78 0 397 103 0 0 chr21 28856675 28856733 -6050837 + L1MB4 LINE L1 6120 6177 -3 1642 118 0 0 chr21 28856733 28856954 -6050616 - AluSx SINE Alu -91 221 1 24 32 0 0 chr21 28856958 28856989 -6050581 + AT_rich Low_complexity Low_complexity 1 31 0 229 344 22 0 chr21 28858049 28858139 -6049431 - L3 LINE CR1 -4 1573 1482 185 256 0 0 chr21 28860792 28860835 -6046735 + L2 LINE L2 2935 2977 -337 361 283 43 51 chr21 28861308 28861446 -6046124 + L2 LINE L2 3136 3272 0 219 188 0 0 chr21 28861910 28861958 -6045612 + (TG)n Simple_repeat Simple_repeat 2 49 0 249 108 0 0 chr21 28862722 28862759 -6044811 + (GA)n Simple_repeat Simple_repeat 2 38 0 1059 103 0 0 chr21 28863469 28863835 -6043735 + (TA)n Simple_repeat Simple_repeat 1 366 0 1059 102 0 0 chr21 28863846 28864023 -6043547 + (TA)n Simple_repeat Simple_repeat 1 177 0 2180 118 0 35 chr21 28864025 28864339 -6043231 - AluSx SINE Alu -9 303 1 303 93 0 0 chr21 28866023 28866066 -6041504 + (TG)n Simple_repeat Simple_repeat 2 44 0 190 106 43 0 chr21 28867176 28867223 -6040347 + (CA)n Simple_repeat Simple_repeat 1 49 0 2126 85 18 4 chr21 28868138 28868419 -6039151 + AluSg SINE Alu 17 301 -9 185 138 0 0 chr21 28868804 28868833 -6038737 + MER5B DNA MER1_type 26 54 -124 343 317 8 16 chr21 28868807 28868930 -6038640 - MER5A DNA MER1_type -28 161 40 1385 174 26 26 chr21 28868952 28869216 -6038354 - AluJb SINE Alu -26 286 23 1469 171 127 52 chr21 28869947 28870310 -6037260 + MLT1B LTR MaLR 1 390 0 200 277 8 84 chr21 28870341 28870460 -6037110 + MER5A DNA MER1_type 27 136 -53 768 196 5 65 chr21 28871003 28871187 -6036383 + MER51A LTR ERV1 446 618 -16 2003 109 21 11 chr21 28872501 28872784 -6034786 + AluSc SINE Alu 12 297 -12 327 25 0 0 chr21 28874606 28874646 -6032924 + (CA)n Simple_repeat Simple_repeat 2 41 0 2689 203 29 54 chr21 28874773 28875423 -6032147 + LTR27 LTR ERV1 3 636 0 1674 136 4 19 chr21 28876712 28876970 -6030600 + MLT2B2 LTR ERVL 1 254 -261 2160 105 3 3 chr21 28876989 28877283 -6030287 + AluSg SINE Alu 1 294 -16 253 312 102 57 chr21 28878125 28878282 -6029288 + MLT1L LTR MaLR 120 283 -332 1659 114 4 0 chr21 28878455 28878682 -6028888 + L1PA11 LINE L1 5939 6166 -8 3212 176 24 48 chr21 28878991 28879611 -6027959 + MER77 LTR ERV1 1 605 0 2319 113 0 0 chr21 28880170 28880480 -6027090 + AluSg SINE Alu 1 310 0 2194 213 60 16 chr21 28880792 28881276 -6026294 - MLT1D LTR MaLR 0 505 1 1307 235 0 97 chr21 28881570 28881802 -6025768 - MLT1A1 LTR MaLR 0 365 112 1809 159 0 34 chr21 28881802 28882097 -6025473 - AluJb SINE Alu -16 296 12 1307 235 0 97 chr21 28882097 28882129 -6025441 - MLT1A1 LTR MaLR -253 112 79 1894 155 7 0 chr21 28882129 28882426 -6025144 + AluJo SINE Alu 3 301 -11 1307 235 0 97 chr21 28882426 28882564 -6025006 - MLT1A1 LTR MaLR -286 79 1 644 86 37 25 chr21 28885709 28885843 -6021727 + (TCTA)n Simple_repeat Simple_repeat 3 166 0 191 36 36 0 chr21 28885843 28885871 -6021699 + (TCTA)n Simple_repeat Simple_repeat 3 31 0 567 164 35 0 chr21 28885911 28886082 -6021488 + (TCTA)n Simple_repeat Simple_repeat 3 179 0 207 250 0 0 chr21 28886631 28886699 -6020871 + GA-rich Low_complexity Low_complexity 4 71 0 517 248 122 61 chr21 28886788 28887082 -6020488 + MER46C DNA MER2_type 5 316 -22 23 54 0 0 chr21 28887894 28887931 -6019639 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr21 28888479 28888502 -6019068 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 886 225 168 22 chr21 28888952 28889268 -6018302 + MLT1A1 LTR MaLR 1 362 -3 429 201 24 12 chr21 28889379 28889543 -6018027 + (TG)n Simple_repeat Simple_repeat 1 166 0 241 188 25 0 chr21 28889613 28889693 -6017877 + (TG)n Simple_repeat Simple_repeat 2 83 0 2176 132 62 6 chr21 28891145 28891501 -6016069 + MSTB LTR MaLR 1 376 -50 752 258 26 11 chr21 28892612 28892802 -6014768 - MIR SINE MIR -28 234 42 2737 111 16 5 chr21 28893887 28894258 -6013312 + THE1C LTR MaLR 1 375 0 500 296 74 6 chr21 28894708 28894870 -6012700 + MER5B DNA MER1_type 2 174 -4 516 221 166 14 chr21 28894896 28895041 -6012529 + MER5A DNA MER1_type 22 188 -1 256 282 165 0 chr21 28895755 28895858 -6011712 - L2 LINE L2 -4 3309 3190 2008 114 61 0 chr21 28895946 28896226 -6011344 - AluSx SINE Alu -15 297 1 431 119 12 60 chr21 28896508 28896592 -6010978 - L1MB2 LINE L1 -1 6170 6091 1782 198 24 40 chr21 28896592 28896686 -6010884 - L1MB3 LINE L1 -152 6031 5937 1788 68 0 9 chr21 28896686 28896906 -6010664 + AluSc SINE Alu 76 293 -16 1782 198 24 40 chr21 28896906 28897190 -6010380 - L1MB3 LINE L1 -246 5937 5659 1997 119 6 53 chr21 28897749 28898067 -6009503 + AluSg SINE Alu 1 303 -7 1534 211 29 48 chr21 28898231 28898610 -6008960 - MLT1A2 LTR MaLR 0 374 3 278 275 182 43 chr21 28899118 28899492 -6008078 + L2 LINE L2 2449 2874 -440 2514 164 47 0 chr21 28899912 28900321 -6007249 + MSTA LTR MaLR 1 428 0 180 0 0 0 chr21 28900332 28900352 -6007218 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 318 179 42 32 chr21 28900812 28900907 -6006663 - L1MC5 LINE L1 -44 7917 7822 2450 53 30 0 chr21 28900976 28901278 -6006292 - AluY SINE Alu 0 311 1 234 150 0 0 chr21 28901370 28901410 -6006160 + (CA)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr21 28902921 28902947 -6004623 + AT_rich Low_complexity Low_complexity 1 26 0 2152 155 11 25 chr21 28903960 28904327 -6003243 + MLT1A1 LTR MaLR 4 365 0 205 233 0 0 chr21 28905612 28905655 -6001915 - L2 LINE L2 -4 3309 3267 434 252 0 0 chr21 28905784 28905883 -6001687 + MIR SINE MIR 87 185 -77 757 269 19 29 chr21 28906403 28906611 -6000959 - MIR SINE MIR -34 228 23 1512 214 46 85 chr21 28907977 28908458 -5999112 + MLT1C LTR MaLR 6 467 0 235 143 89 18 chr21 28908801 28908857 -5998713 + MLT1A2 LTR MaLR 1 60 -314 625 135 28 14 chr21 28908857 28908998 -5998572 + GA-rich Low_complexity Low_complexity 4 146 0 1122 122 0 0 chr21 28908995 28909038 -5998532 + (GGGAA)n Simple_repeat Simple_repeat 1 223 0 1122 122 0 0 chr21 28909038 28909218 -5998352 + (GGGAA)n Simple_repeat Simple_repeat 1 180 0 812 257 70 22 chr21 28909282 28909554 -5998016 + MLT1A2 LTR MaLR 90 374 0 241 328 24 16 chr21 28909564 28909689 -5997881 - L2 LINE L2 -1323 1991 1866 248 82 66 16 chr21 28909780 28909841 -5997729 + GA-rich Low_complexity Low_complexity 4 67 0 2147 105 13 3 chr21 28910300 28910605 -5996965 + AluY SINE Alu 1 308 -3 2549 206 54 20 chr21 28911583 28912121 -5995449 + MER68 LTR ERV1 5 560 -2 261 0 0 0 chr21 28912288 28912317 -5995253 + (CAAAAA)n Simple_repeat Simple_repeat 4 32 0 252 120 11 54 chr21 28912455 28912547 -5995023 + (CA)n Simple_repeat Simple_repeat 2 89 0 532 120 35 42 chr21 28912563 28912832 -5994738 + (CA)n Simple_repeat Simple_repeat 1 267 0 2086 64 0 0 chr21 28917204 28917454 -5990116 + L1PA13 LINE L1 5910 6159 -4 679 224 14 14 chr21 28917518 28917661 -5989909 + MLT1I LTR MaLR 79 221 -188 1532 161 19 8 chr21 28919508 28919768 -5987802 + AluJb SINE Alu 1 263 -49 21 57 0 0 chr21 28920022 28920057 -5987513 + AT_rich Low_complexity Low_complexity 1 35 0 246 309 12 0 chr21 28920247 28920328 -5987242 + MIR SINE MIR 38 119 -143 211 287 117 11 chr21 28920532 28920626 -5986944 + MIR3 SINE MIR 104 207 -1 291 210 0 0 chr21 28921670 28921732 -5985838 - MER81 DNA DNA -26 88 27 244 158 13 66 chr21 28922719 28922795 -5984775 - LTR16A1 LTR ERVL -101 356 285 2397 168 27 11 chr21 28923135 28923576 -5983994 - L1MA4 LINE L1 -6 7713 7266 3755 181 16 24 chr21 28923585 28924385 -5983185 - L1MA4 LINE L1 -896 6669 5876 359 219 7 89 chr21 28924354 28924500 -5983070 - L1MA4 LINE L1 -4135 3430 3297 2512 81 0 0 chr21 28924943 28925250 -5982320 + AluSx SINE Alu 1 307 -5 7009 177 14 12 chr21 28925332 28926553 -5981017 + Tigger1 DNA MER2_type 26 1248 -1170 2290 226 91 25 chr21 28926556 28927076 -5980494 - L1MEc LINE L1 -2000 4215 3634 2043 155 0 16 chr21 28927076 28927393 -5980177 - AluSx SINE Alu 0 312 1 2290 226 91 25 chr21 28927393 28927586 -5979984 - L1MEc LINE L1 -2581 3634 3455 2159 245 49 39 chr21 28927704 28928548 -5979022 - L1MEc LINE L1 -2915 3300 2449 1040 121 115 0 chr21 28928548 28928730 -5978840 + L1MC2 LINE L1 6017 6219 -125 2171 235 47 37 chr21 28928754 28929589 -5977981 - L1MEc LINE L1 -3926 2470 1628 1584 178 0 11 chr21 28929604 28929879 -5977691 + AluJo SINE Alu 16 287 -25 210 118 0 0 chr21 28929879 28929913 -5977657 + (CA)n Simple_repeat Simple_repeat 2 35 0 227 276 101 30 chr21 28929942 28930141 -5977429 - L1MEc LINE L1 -4892 1323 1111 2993 166 68 23 chr21 28930229 28930771 -5976799 - L1MC3 LINE L1 0 7785 7269 1687 196 59 46 chr21 28930771 28930788 -5976782 - MER31B LTR ERV1 0 466 451 1397 179 29 45 chr21 28930788 28931096 -5976474 + AluJo SINE Alu 1 303 -9 1687 196 59 46 chr21 28931096 28931537 -5976033 - MER31B LTR ERV1 -15 451 2 2993 166 68 23 chr21 28931537 28931629 -5975941 - L1MC3 LINE L1 -516 7269 5680 465 237 92 8 chr21 28931638 28931769 -5975801 - L1MEc LINE L1 -6163 233 92 2134 126 55 27 chr21 28931782 28932147 -5975423 - THE1C LTR MaLR 0 375 1 348 243 0 0 chr21 28932163 28932233 -5975337 - L1MEc LINE L1 -6293 103 34 2347 65 16 7 chr21 28932258 28932564 -5975006 + AluY SINE Alu 1 309 -2 300 324 106 11 chr21 28935406 28935585 -5971985 + L2 LINE L2 3118 3313 0 7102 47 16 0 chr21 28935698 28936570 -5971000 - L1PA7 LINE L1 -2 6152 5267 2026 18 0 0 chr21 28938632 28938855 -5968715 + AluYb8 SINE Alu 96 318 0 237 33 0 0 chr21 28939160 28939190 -5968380 + (GA)n Simple_repeat Simple_repeat 1 30 0 3373 253 50 26 chr21 28940300 28941169 -5966401 + MSTD-int LTR MaLR 841 1729 -6 1201 226 152 17 chr21 28941174 28941523 -5966047 + MSTD LTR MaLR 1 396 0 180 0 0 0 chr21 28942736 28942756 -5964814 + (TG)n Simple_repeat Simple_repeat 1 20 0 285 261 96 43 chr21 28943089 28943204 -5964366 - L2 LINE L2 0 3313 3193 232 353 12 0 chr21 28943506 28943591 -5963979 - L2 LINE L2 0 3272 3187 2096 205 82 8 chr21 28943685 28944187 -5963383 + L1MB8 LINE L1 5639 6177 -1 2164 115 78 32 chr21 28944690 28945038 -5962532 - THE1B LTR MaLR 0 364 1 2326 246 45 50 chr21 28945128 28945200 -5962370 + L1ME3A LINE L1 5255 5326 -844 1767 155 35 0 chr21 28945200 28945484 -5962086 + AluJo SINE Alu 2 295 -17 2326 246 45 50 chr21 28945484 28946248 -5961322 + L1ME3A LINE L1 5326 6087 -83 2043 285 66 27 chr21 28947048 28949416 -5958154 + L1MEc LINE L1 180 2599 -3616 317 339 60 0 chr21 28949585 28949768 -5957802 + L2 LINE L2 2864 3057 -215 375 228 132 9 chr21 28952188 28952302 -5955268 + HAL1 LINE L1 1579 1706 -801 1381 258 63 19 chr21 28952325 28952755 -5954815 + HAL1 LINE L1 1741 2189 -318 2461 125 86 34 chr21 28953056 28953463 -5954107 + MSTC LTR MaLR 1 428 0 1118 285 80 30 chr21 28953832 28954672 -5952898 + L2 LINE L2 2423 3298 -15 2355 92 3 3 chr21 28954772 28955075 -5952495 - AluSq SINE Alu -10 303 1 281 341 15 15 chr21 28955446 28955581 -5951989 - MIR SINE MIR -3 259 125 197 359 60 26 chr21 28957492 28957609 -5949961 + L3 LINE CR1 544 664 -913 1586 189 31 0 chr21 28957789 28958075 -5949495 - MLT1B LTR MaLR 0 390 96 21 0 0 0 chr21 28958084 28958105 -5949465 + GC_rich Low_complexity Low_complexity 1 21 0 1965 121 11 4 chr21 28958108 28958380 -5949190 - AluSg SINE Alu -36 274 1 580 162 48 0 chr21 28958382 28958487 -5949083 - MLT1B LTR MaLR -280 110 1 333 216 0 0 chr21 28958629 28958703 -5948867 + L3 LINE CR1 1337 1410 -167 961 208 19 24 chr21 28959736 28959948 -5947622 + MER20 DNA MER1_type 9 219 0 1779 248 54 59 chr21 28962132 28962744 -5944826 - MER21B LTR ERV1 -53 810 202 851 181 22 0 chr21 28962761 28962899 -5944671 - MLT1B LTR MaLR 0 390 250 784 193 52 57 chr21 28962908 28963100 -5944470 - MER21B LTR ERV1 -672 191 1 2083 108 10 10 chr21 28963713 28964001 -5943569 + AluSq SINE Alu 1 288 -25 332 278 31 86 chr21 28964755 28964917 -5942653 - MLT1J1 LTR MaLR -8 438 286 859 219 16 0 chr21 28964951 28965134 -5942436 - MER5A DNA MER1_type 0 189 4 2016 169 70 0 chr21 28965725 28966080 -5941490 - MLT1B LTR MaLR -9 381 2 288 0 0 0 chr21 28966310 28966342 -5941228 + (T)n Simple_repeat Simple_repeat 1 32 0 540 253 118 18 chr21 28967817 28967987 -5939583 + MER5A DNA MER1_type 2 188 -1 501 250 12 60 chr21 28968001 28968169 -5939401 + MER5B DNA MER1_type 5 164 -14 240 312 0 0 chr21 28968360 28968424 -5939146 + MER91B DNA MER1_type 2 65 -125 488 146 0 58 chr21 28968618 28968721 -5938849 - L1 LINE L1 -1772 4374 4278 1229 217 8 16 chr21 28968721 28968970 -5938600 + MLT1D LTR MaLR 259 505 0 341 312 0 0 chr21 28969122 28969215 -5938355 + (CAT)n Simple_repeat Simple_repeat 2 94 0 287 330 68 17 chr21 28969233 28969351 -5938219 - MIR SINE MIR -109 153 30 23 0 0 0 chr21 28969961 28969984 -5937586 + AT_rich Low_complexity Low_complexity 1 23 0 249 309 47 20 chr21 28970238 28970387 -5937183 + L1M2 LINE L1 1226 1378 -6118 14798 203 27 28 chr21 28971011 28976208 -5931362 + L1M2 LINE L1 2088 7191 -528 2065 133 40 0 chr21 28976283 28976583 -5930987 - AluSq SINE Alu -1 312 1 1541 300 94 25 chr21 28976728 28977399 -5930171 + L2 LINE L2 2040 2756 -558 787 262 73 69 chr21 28977410 28977833 -5929737 + L2 LINE L2 2888 3312 -1 440 223 27 9 chr21 28977835 28977947 -5929623 + L1ME3A LINE L1 5831 5944 -226 750 259 6 0 chr21 28978899 28979057 -5928513 + FRAM SINE Alu 4 162 -4 251 275 14 0 chr21 28979136 28979205 -5928365 + GA-rich Low_complexity Low_complexity 1 70 0 254 200 229 0 chr21 28979209 28979279 -5928291 + L2 LINE L2 3227 3312 -1 265 253 35 23 chr21 28980254 28980341 -5927229 + MIR SINE MIR 65 152 -56 918 268 54 10 chr21 28980695 28981008 -5926562 - LTR16C LTR ERVL -15 476 150 2077 129 0 20 chr21 28981530 28981833 -5925737 + AluSg SINE Alu 10 306 -4 329 174 58 70 chr21 28982143 28982229 -5925341 + MLT1H LTR MaLR 1 85 -464 643 262 73 25 chr21 28982334 28982372 -5925198 - MIR SINE MIR -10 252 217 2953 133 21 5 chr21 28982372 28982752 -5924818 + MSTA LTR MaLR 1 390 -38 2049 146 0 0 chr21 28982752 28983047 -5924523 - AluSx SINE Alu -17 295 1 2953 133 21 5 chr21 28983047 28983087 -5924483 + MSTA LTR MaLR 390 428 0 643 262 73 25 chr21 28983087 28983273 -5924297 - MIR SINE MIR -45 217 24 303 28 0 0 chr21 28983332 28983368 -5924202 + (TG)n Simple_repeat Simple_repeat 2 37 0 2448 80 3 6 chr21 28983369 28983680 -5923890 - AluY SINE Alu -1 310 1 288 196 18 0 chr21 28984094 28984150 -5923420 + MLT1H1 LTR MaLR 464 520 -35 1468 204 104 53 chr21 28984232 28984663 -5922907 + MLT1C LTR MaLR 12 464 -3 1303 52 0 0 chr21 28984736 28984889 -5922681 + AluY SINE Alu 146 298 -13 1824 119 0 79 chr21 28986314 28986671 -5920899 - AluSc SINE Alu 0 333 1 197 258 30 15 chr21 28986733 28986799 -5920771 - MIR SINE MIR -60 148 82 430 275 18 23 chr21 28987625 28987796 -5919774 - MLT1D LTR MaLR -159 346 177 911 165 28 28 chr21 28987852 28988034 -5919536 + MLT1C LTR MaLR 286 467 0 480 82 0 0 chr21 28988104 28988165 -5919405 + U3 snRNA snRNA 8 68 -149 18362 98 12 6 chr21 28988165 28991471 -5916099 + L1PA8 LINE L1 2838 6168 -4 2261 106 14 0 chr21 28993048 28993341 -5914229 - AluSx SINE Alu -15 297 1 1765 163 92 48 chr21 28995977 28996436 -5911134 + MER31A LTR ERV1 7 485 0 564 280 21 37 chr21 28996994 28997183 -5910387 - MIR SINE MIR -35 227 42 2138 141 0 0 chr21 28998518 28998824 -5908746 - AluSq SINE Alu -7 306 1 384 307 35 28 chr21 28999243 28999530 -5908040 + LTR16A1 LTR ERVL 104 392 -65 1198 181 68 77 chr21 28999573 28999971 -5907599 - MLT1C LTR MaLR -14 376 1 36 53 0 0 chr21 29001308 29001365 -5906205 + AT_rich Low_complexity Low_complexity 1 57 0 1685 194 94 80 chr21 29001397 29002100 -5905470 + Ricksha DNA DNA 1 719 -1327 3224 156 13 12 chr21 29002104 29002723 -5904847 + Ricksha DNA DNA 2676 3247 -13 225 315 20 86 chr21 29002892 29003184 -5904386 - L2 LINE L2 -358 2956 2684 2114 176 28 6 chr21 29003351 29003708 -5903862 - MLT1A1 LTR MaLR 0 365 1 307 342 0 33 chr21 29003982 29004102 -5903468 + L1MEd LINE L1 1059 1174 -4945 660 391 26 13 chr21 29004171 29004557 -5903013 + HAL1 LINE L1 1373 1763 -744 21 0 0 0 chr21 29004647 29004668 -5902902 + AT_rich Low_complexity Low_complexity 1 21 0 261 139 0 0 chr21 29004708 29004751 -5902819 - Alu SINE Alu -4 304 262 2379 103 3 0 chr21 29005098 29005410 -5902160 + AluSp SINE Alu 1 313 0 322 273 105 64 chr21 29005830 29006239 -5901331 - L2 LINE L2 -15 3298 2811 234 0 0 0 chr21 29006754 29006780 -5900790 + (TG)n Simple_repeat Simple_repeat 2 27 0 225 0 0 0 chr21 29006779 29006804 -5900766 + (TA)n Simple_repeat Simple_repeat 2 26 0 1965 183 78 0 chr21 29006868 29007229 -5900341 + MLT1B LTR MaLR 1 389 -1 2085 114 0 36 chr21 29007368 29007675 -5899895 - AluSx SINE Alu -16 296 1 1115 239 30 8 chr21 29007787 29008021 -5899549 - MER8 DNA MER2_type 0 239 1 2424 51 0 70 chr21 29008222 29008553 -5899017 + AluY SINE Alu 1 308 -3 1859 164 0 16 chr21 29008801 29009118 -5898452 + AluJb SINE Alu 1 312 0 264 200 0 0 chr21 29009783 29009838 -5897732 + (TG)n Simple_repeat Simple_repeat 2 56 0 73 66 0 0 chr21 29010337 29010473 -5897097 + AT_rich Low_complexity Low_complexity 1 136 0 2202 117 62 45 chr21 29010492 29010850 -5896720 + THE1B LTR MaLR 1 364 0 1566 242 25 11 chr21 29010917 29011277 -5896293 + MLT1A1 LTR MaLR 1 365 0 258 81 0 0 chr21 29012028 29012065 -5895505 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 227 276 67 38 chr21 29012086 29012191 -5895379 - L2 LINE L2 -33 3239 3132 2360 93 3 0 chr21 29012310 29012709 -5894861 + AluSp SINE Alu 1 400 0 392 189 67 0 chr21 29012775 29012865 -5894705 + MER5A DNA MER1_type 14 109 -80 2548 53 0 0 chr21 29015909 29016210 -5891360 - AluY SINE Alu -10 301 1 1733 93 0 0 chr21 29016525 29016750 -5890820 - AluSg/x SINE Alu 0 310 86 1821 114 97 24 chr21 29017250 29017540 -5890030 + AluSq SINE Alu 1 311 -2 2439 47 7 3 chr21 29017728 29018024 -5889546 + AluY SINE Alu 1 297 -14 1667 175 83 40 chr21 29018276 29018484 -5889086 - MLT1B LTR MaLR 0 390 158 2086 105 61 3 chr21 29018484 29018779 -5888791 - AluSx SINE Alu 0 312 1 1667 175 83 40 chr21 29018779 29018942 -5888628 - MLT1B LTR MaLR -232 158 3 333 276 112 13 chr21 29019559 29019711 -5887859 + MER117 DNA MER1_type 5 171 -26 2068 135 3 0 chr21 29019840 29020144 -5887426 - AluSx SINE Alu -5 307 3 28 61 0 0 chr21 29020612 29020661 -5886909 + AT_rich Low_complexity Low_complexity 1 49 0 273 284 32 0 chr21 29022331 29022426 -5885144 - MIR SINE MIR -1 261 164 405 209 0 35 chr21 29022989 29023075 -5884495 + MER5A DNA MER1_type 9 91 -98 190 91 30 30 chr21 29023068 29023101 -5884469 - MER5A DNA MER1_type -110 79 47 1680 246 29 69 chr21 29025781 29026253 -5881317 - MLT1D LTR MaLR -1 504 15 2182 171 99 8 chr21 29026253 29026645 -5880925 + MSTC LTR MaLR 1 428 0 5554 235 87 67 chr21 29026647 29027059 -5880511 + MSTC-int LTR MaLR 2 404 -1331 1806 117 0 0 chr21 29027059 29027299 -5880271 - AluSg/x SINE Alu 0 310 71 1683 137 15 4 chr21 29027300 29027563 -5880007 - AluSg SINE Alu -1 309 44 5554 235 87 67 chr21 29027563 29028848 -5878722 + MSTC-int LTR MaLR 403 1735 0 2377 169 49 5 chr21 29028850 29029258 -5878312 + MSTC LTR MaLR 3 428 0 1680 246 29 69 chr21 29029258 29029304 -5878266 - MLT1D LTR MaLR -492 13 1 259 344 75 46 chr21 29030919 29031422 -5876148 + L2 LINE L2 1973 2490 -824 461 299 24 12 chr21 29031685 29031852 -5875718 + LTR33 LTR ERVL 45 213 -308 378 240 70 80 chr21 29031903 29032054 -5875516 + LTR33 LTR ERVL 309 459 -62 2375 87 10 3 chr21 29032054 29032363 -5875207 - AluY SINE Alu 0 311 1 378 240 70 80 chr21 29032363 29032411 -5875159 + LTR33 LTR ERVL 459 506 -15 3711 52 2 0 chr21 29033015 29033461 -5874109 + L1PA7 LINE L1 5692 6138 -16 318 26 0 0 chr21 29033461 29033500 -5874070 + (CAAT)n Simple_repeat Simple_repeat 2 40 0 424 246 97 8 chr21 29034407 29034541 -5873029 + LTR16A LTR ERVL 139 284 -166 1784 163 3 10 chr21 29034830 29035131 -5872439 - AluJb SINE Alu -13 299 1 644 269 70 13 chr21 29035663 29035890 -5871680 + L1MB8 LINE L1 5936 6175 -3 1647 197 0 14 chr21 29036974 29037269 -5870301 + AluJo SINE Alu 1 291 -21 1067 239 3 25 chr21 29039702 29039987 -5867583 - L1 LINE L1 -3038 3108 2830 2377 97 0 7 chr21 29039990 29040300 -5867270 - AluSg1 SINE Alu -1 308 1 339 213 199 7 chr21 29042146 29042282 -5865288 + MIR SINE MIR 85 246 -16 1864 114 11 4 chr21 29042689 29042952 -5864618 + AluSg SINE Alu 36 300 -10 2972 9 0 0 chr21 29044170 29044487 -5863083 + AluYb8 SINE Alu 1 317 -1 2562 68 0 0 chr21 29044620 29044931 -5862639 + AluY SINE Alu 1 311 0 4307 65 2 0 chr21 29046446 29046987 -5860583 + L1PA8 LINE L1 5622 6163 -9 387 208 0 0 chr21 29047382 29047507 -5860063 + (TA)n Simple_repeat Simple_repeat 1 125 0 327 85 0 0 chr21 29047728 29047775 -5859795 + (CA)n Simple_repeat Simple_repeat 1 47 0 980 124 9 7 chr21 29047906 29048075 -5859495 - L1PA13 LINE L1 -312 5862 5723 2431 70 0 13 chr21 29048075 29048389 -5859181 + L1PA13 LINE L1 5852 6163 0 2385 116 0 0 chr21 29048393 29048703 -5858867 + AluSx SINE Alu 1 310 -2 2017 126 0 0 chr21 29049224 29049501 -5858069 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr21 29049560 29049585 -5857985 + (TG)n Simple_repeat Simple_repeat 2 26 0 1657 156 16 42 chr21 29050760 29051068 -5856502 - AluJb SINE Alu -12 300 1 404 277 50 0 chr21 29051473 29051592 -5855978 - L2 LINE L2 0 3313 3189 462 36 0 0 chr21 29051615 29051671 -5855899 + (TTCC)n Simple_repeat Simple_repeat 1 56 0 2324 106 3 0 chr21 29051671 29051973 -5855597 - AluSx SINE Alu -9 303 1 191 322 0 0 chr21 29052324 29052383 -5855187 - L2 LINE L2 -2 3270 3212 1265 281 110 48 chr21 29052467 29053589 -5853981 - L2 LINE L2 -184 3129 1939 1243 166 5 9 chr21 29053638 29053855 -5853715 + AluJo SINE Alu 97 312 0 864 157 0 0 chr21 29054485 29054619 -5852951 + FLAM_C SINE Alu 9 142 -1 691 272 53 72 chr21 29054624 29054746 -5852824 - L2 LINE L2 -1715 1599 1476 1783 189 113 53 chr21 29054746 29055015 -5852555 + LTR53 LTR ERVL 3 255 -264 2184 96 7 7 chr21 29055015 29055297 -5852273 - AluSx SINE Alu -13 299 18 1783 189 113 53 chr21 29055297 29055515 -5852055 + LTR53 LTR ERVL 255 519 0 691 272 53 72 chr21 29055515 29055881 -5851689 - L2 LINE L2 -1838 1476 1120 2154 174 23 30 chr21 29056406 29056837 -5850733 - MSTA LTR MaLR 0 428 1 663 315 16 16 chr21 29056902 29057159 -5850411 + MIR SINE MIR 6 262 0 1049 196 9 14 chr21 29060186 29060400 -5847170 - MER20 DNA MER1_type -6 213 1 2063 52 16 0 chr21 29060515 29060763 -5846807 + AluY SINE Alu 30 281 -30 500 0 17 0 chr21 29060766 29060826 -5846744 + (TAA)n Simple_repeat Simple_repeat 2 62 0 31 0 0 0 chr21 29064470 29064501 -5843069 + AT_rich Low_complexity Low_complexity 1 31 0 476 156 31 4 chr21 29065388 29065496 -5842074 + L1MA7 LINE L1 5853 5959 -332 369 0 0 0 chr21 29069725 29069766 -5837804 + (TG)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr21 29070141 29070166 -5837404 + (T)n Simple_repeat Simple_repeat 1 25 0 528 98 29 0 chr21 29071885 29071987 -5835583 + CT-rich Low_complexity Low_complexity 2 106 0 28 29 0 0 chr21 29072806 29072841 -5834729 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr21 29073050 29073088 -5834482 + GC_rich Low_complexity Low_complexity 1 38 0 210 24 0 71 chr21 29073117 29073159 -5834411 + (CCG)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr21 29073161 29073189 -5834381 + GC_rich Low_complexity Low_complexity 1 28 0 1853 272 78 60 chr21 29074995 29075904 -5831666 - MER45C DNA AcHobo 0 953 29 238 298 48 12 chr21 29076034 29076118 -5831452 + L2 LINE L2 3143 3229 -43 1597 242 32 43 chr21 29076868 29077334 -5830236 - MLT1C LTR MaLR 0 467 7 204 238 12 71 chr21 29077500 29077584 -5829986 + MIR SINE MIR 117 195 -67 341 322 16 0 chr21 29077922 29078043 -5829527 + L1ME3 LINE L1 6011 6133 -29 352 194 23 6 chr21 29078199 29078374 -5829196 + (TG)n Simple_repeat Simple_repeat 2 179 0 237 284 11 0 chr21 29079056 29079116 -5828454 - MIR SINE MIR -72 136 48 339 25 0 0 chr21 29079393 29079433 -5828137 + (CA)n Simple_repeat Simple_repeat 1 40 0 371 324 20 0 chr21 29079839 29079941 -5827629 + L2 LINE L2 3168 3271 -1 293 268 136 51 chr21 29080918 29081153 -5826417 + MIR SINE MIR 8 262 0 2321 81 0 7 chr21 29081557 29081855 -5825715 - AluSc SINE Alu -13 296 1 299 339 60 49 chr21 29082012 29082481 -5825089 + L1ME LINE L1 5254 5727 -2081 294 29 0 0 chr21 29082680 29082715 -5824855 + (TG)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr21 29082714 29082734 -5824836 + (GA)n Simple_repeat Simple_repeat 1 20 0 188 33 0 33 chr21 29082827 29082857 -5824713 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 267 31 0 0 chr21 29083530 29083562 -5824008 + (CA)n Simple_repeat Simple_repeat 2 33 0 2301 188 53 26 chr21 29083566 29084033 -5823537 - MLT2B1 LTR ERVL -40 480 1 364 274 35 9 chr21 29084750 29084863 -5822707 - L2 LINE L2 -4 3309 3194 308 241 60 0 chr21 29085087 29085170 -5822400 + L1ME LINE L1 5731 5818 -303 964 150 39 53 chr21 29085536 29085743 -5821827 - MER3 DNA MER1_type -5 204 1 24 32 0 0 chr21 29086062 29086093 -5821477 + AT_rich Low_complexity Low_complexity 1 31 0 184 111 0 0 chr21 29086184 29086211 -5821359 + L3 LINE CR1 1536 1562 -15 301 252 0 112 chr21 29088350 29088457 -5819113 - L2 LINE L2 -34 3238 3144 1806 216 77 16 chr21 29088638 29089078 -5818492 - MLT1C LTR MaLR 0 467 1 183 308 62 15 chr21 29089110 29089240 -5818330 - L2 LINE L2 -336 2977 2842 1158 280 102 40 chr21 29089365 29089667 -5817903 + HAL1 LINE L1 409 691 -1816 851 207 32 27 chr21 29089667 29089855 -5817715 - MER5A DNA MER1_type 0 189 1 1158 280 102 40 chr21 29089855 29090220 -5817350 + HAL1 LINE L1 691 1117 -1390 1572 246 75 30 chr21 29091701 29092277 -5815293 + HAL1 LINE L1 1143 1744 -763 21 0 0 0 chr21 29092552 29092573 -5814997 + AT_rich Low_complexity Low_complexity 1 21 0 2115 112 3 11 chr21 29092778 29093084 -5814486 - AluSx SINE Alu 0 305 2 448 214 67 0 chr21 29093346 29093435 -5814135 + L1MB8 LINE L1 1 95 -6764 189 0 0 0 chr21 29093435 29093456 -5814114 + (TA)n Simple_repeat Simple_repeat 1 21 0 293 117 17 0 chr21 29093502 29093562 -5814008 + (TA)n Simple_repeat Simple_repeat 2 62 0 2179 286 27 14 chr21 29093562 29094118 -5813452 + L1MB8 LINE L1 109 671 -6188 3998 200 14 13 chr21 29094117 29094203 -5813367 - L1 LINE L1 -1312 4834 4750 2001 161 0 3 chr21 29094203 29094508 -5813062 - AluSx SINE Alu -8 304 1 3998 200 14 13 chr21 29094508 29095266 -5812304 - L1 LINE L1 -1396 4750 3989 5785 121 49 0 chr21 29095268 29096549 -5811021 + L1PA16 LINE L1 4833 6157 -9 2750 222 47 33 chr21 29096566 29097241 -5810329 + L1MB8 LINE L1 688 1372 -5487 360 167 0 0 chr21 29097244 29097316 -5810254 + GA-rich Low_complexity Low_complexity 1 72 0 1754 250 42 37 chr21 29097328 29098241 -5809329 + L1MB8 LINE L1 1400 2411 -4546 7318 251 48 43 chr21 29098595 29099405 -5808165 + L1MB8 LINE L1 2643 3448 -3541 3665 140 4 22 chr21 29099405 29099942 -5807628 - MER1A DNA MER1_type 0 527 1 7318 251 48 43 chr21 29099942 29100774 -5806796 + L1MB8 LINE L1 3448 4275 -2714 4971 54 2 21 chr21 29100774 29101382 -5806188 + L1PA8 LINE L1 5575 6170 -2 7318 251 48 43 chr21 29101382 29103942 -5803628 + L1MB8 LINE L1 4275 6823 -166 1391 147 23 40 chr21 29103984 29104326 -5803244 - MSTA LTR MaLR 0 428 1 760 172 7 14 chr21 29104326 29104471 -5803099 + L1MB8 LINE L1 6840 6983 -6 289 208 14 14 chr21 29104759 29104831 -5802739 + LTR33 LTR ERVL 37 108 -413 1339 194 28 68 chr21 29105002 29105326 -5802244 + MLT1A1 LTR MaLR 55 365 0 31 0 0 0 chr21 29106256 29106287 -5801283 + AT_rich Low_complexity Low_complexity 1 31 0 1998 81 4 7 chr21 29106315 29106586 -5800984 + AluY SINE Alu 42 311 0 1764 183 0 20 chr21 29107238 29107544 -5800026 + AluJo SINE Alu 1 300 -12 277 353 7 33 chr21 29107902 29108052 -5799518 - MIR SINE MIR -80 182 37 3271 201 54 22 chr21 29108525 29109246 -5798324 - MER49 LTR ERV1 0 923 180 2370 90 0 3 chr21 29109735 29110046 -5797524 + AluY SINE Alu 1 310 -1 2225 122 0 0 chr21 29110132 29110434 -5797136 + AluSc SINE Alu 3 304 -5 2307 102 3 0 chr21 29110848 29111152 -5796418 + AluSp SINE Alu 1 305 -8 3133 173 53 13 chr21 29111724 29111786 -5795784 - L1MB8 LINE L1 -5 6173 6115 2075 115 0 7 chr21 29111786 29112115 -5795455 + AluSx SINE Alu 1 327 0 3133 173 53 13 chr21 29112115 29112674 -5794896 - L1MB8 LINE L1 -63 6115 5526 2622 144 49 5 chr21 29112812 29113222 -5794348 - MSTA LTR MaLR 0 428 1 1730 163 11 11 chr21 29113809 29114091 -5793479 + AluJo SINE Alu 1 282 -30 21 57 0 0 chr21 29115468 29115503 -5792067 + AT_rich Low_complexity Low_complexity 1 35 0 1251 114 5 5 chr21 29116008 29116192 -5791378 - L1PA13 LINE L1 0 6163 5980 24 32 0 0 chr21 29116353 29116384 -5791186 + AT_rich Low_complexity Low_complexity 1 31 0 461 267 13 60 chr21 29116715 29116865 -5790705 + MIR SINE MIR 20 162 -100 180 0 0 0 chr21 29117133 29117153 -5790417 + (CAG)n Simple_repeat Simple_repeat 2 21 0 2199 92 0 3 chr21 29117306 29117616 -5789954 + AluSx SINE Alu 1 309 0 1961 134 0 0 chr21 29118471 29118755 -5788815 + L1PA13 LINE L1 5876 6159 -4 237 286 0 0 chr21 29119599 29119648 -5787922 + (ATGGTG)n Simple_repeat Simple_repeat 6 54 0 546 289 13 45 chr21 29121400 29121556 -5786014 + MIR SINE MIR 10 160 -102 371 299 0 9 chr21 29121881 29121988 -5785582 + MIR SINE MIR 156 261 -1 2530 128 5 25 chr21 29122106 29122473 -5785097 - THE1B LTR MaLR 0 364 5 2602 159 17 2 chr21 29122509 29122918 -5784652 + MSTA LTR MaLR 3 417 -11 8961 198 14 14 chr21 29122929 29124580 -5782990 + MSTA-int LTR MaLR 1 1651 0 2568 177 21 0 chr21 29124580 29124999 -5782571 + MSTA LTR MaLR 1 428 0 1254 208 22 110 chr21 29125683 29126083 -5781487 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr21 29126219 29126240 -5781330 + AT_rich Low_complexity Low_complexity 1 21 0 3393 158 22 5 chr21 29126684 29127236 -5780334 - MER34B LTR ERV1 -4 561 1 813 169 0 0 chr21 29129077 29129207 -5778363 + AluJ SINE Alu 4 133 -169 697 182 34 40 chr21 29129207 29129221 -5778349 + AluJ SINE Alu 134 147 -165 2135 142 44 19 chr21 29129221 29129587 -5777983 - THE1C LTR MaLR 0 375 1 697 182 34 40 chr21 29129587 29129720 -5777850 + AluJ SINE Alu 147 280 -32 216 0 0 0 chr21 29129734 29129758 -5777812 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 274 222 56 0 chr21 29130644 29130716 -5776854 + MIR SINE MIR 117 192 -70 382 43 0 0 chr21 29132156 29132203 -5775367 - L1PA3 LINE L1 -253 5902 5856 201 74 0 0 chr21 29132238 29132265 -5775305 + (A)n Simple_repeat Simple_repeat 1 27 0 265 377 38 32 chr21 29132679 29133050 -5774520 + L3 LINE CR1 303 675 -902 728 151 92 0 chr21 29133132 29133284 -5774286 + L1MB3 LINE L1 6018 6183 0 21 36 0 0 chr21 29133657 29133685 -5773885 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 29133751 29133772 -5773798 + AT_rich Low_complexity Low_complexity 1 21 0 370 252 163 45 chr21 29134138 29134340 -5773230 + MIR SINE MIR 10 235 -27 326 272 40 16 chr21 29134632 29134757 -5772813 - LTR33 LTR ERVL -340 181 54 222 105 0 0 chr21 29136183 29136221 -5771349 + (TA)n Simple_repeat Simple_repeat 2 39 0 300 250 31 70 chr21 29139223 29139309 -5768261 + L1ME LINE L1 5735 5816 -305 2357 82 3 13 chr21 29139309 29139612 -5767958 - AluY SINE Alu -11 300 1 300 250 31 70 chr21 29139612 29139653 -5767917 + L1ME LINE L1 5816 5857 -264 369 0 0 0 chr21 29139733 29139774 -5767796 + (CA)n Simple_repeat Simple_repeat 2 42 0 844 171 35 12 chr21 29139877 29140047 -5767523 + MIR SINE MIR 10 183 -79 23 33 0 0 chr21 29140155 29140185 -5767385 + AT_rich Low_complexity Low_complexity 1 30 0 366 289 76 72 chr21 29140565 29140745 -5766825 - L2 LINE L2 0 3313 3135 2521 110 13 11 chr21 29140745 29141118 -5766452 - THE1C LTR MaLR -1 374 1 366 289 76 72 chr21 29141118 29141436 -5766134 - L2 LINE L2 -178 3135 2813 2021 223 40 40 chr21 29141538 29142063 -5765507 + MLT2B3 LTR ERVL 1 525 -29 11279 29 0 1 chr21 29142142 29144224 -5763346 + L1PA2 LINE L1 4074 6154 -1 20207 181 32 8 chr21 29144347 29147893 -5759677 + ERVL-B3 LTR ERVL 172 3802 -1962 1844 162 3 6 chr21 29147894 29148222 -5759348 + L1MA4 LINE L1 5968 6294 -6 22 35 0 0 chr21 29148327 29148356 -5759214 + AT_rich Low_complexity Low_complexity 1 29 0 696 179 47 91 chr21 29148408 29148484 -5759086 - Charlie1a DNA MER1_type -2532 229 151 1794 171 18 114 chr21 29148484 29148604 -5758966 + MLT2D LTR ERVL 2 132 -282 2083 104 0 4 chr21 29148604 29148874 -5758696 + AluSq SINE Alu 14 282 -31 216 0 0 0 chr21 29148874 29148898 -5758672 + (CA)n Simple_repeat Simple_repeat 1 24 0 1794 171 18 114 chr21 29148898 29149158 -5758412 + MLT2D LTR ERVL 131 334 -80 396 0 0 0 chr21 29149158 29149202 -5758368 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 1794 171 18 114 chr21 29149202 29149276 -5758294 + MLT2D LTR ERVL 334 414 0 696 179 47 91 chr21 29149276 29149461 -5758109 - Charlie1a DNA MER1_type -2610 151 1 207 304 0 0 chr21 29152504 29152573 -5754997 + (TG)n Simple_repeat Simple_repeat 1 69 0 219 280 65 28 chr21 29153138 29153245 -5754325 - L2 LINE L2 0 3313 3203 243 289 21 41 chr21 29153621 29153718 -5753852 - L3 LINE CR1 -148 1429 1335 2727 97 8 0 chr21 29154459 29154820 -5752750 - THE1B LTR MaLR 0 364 1 10376 101 41 37 chr21 29154820 29156392 -5751178 - THE1B-int LTR MaLR 0 1580 2 2388 106 65 0 chr21 29156393 29156734 -5750836 - THE1B LTR MaLR 0 364 2 420 174 40 141 chr21 29158495 29158644 -5748926 + MLT1C LTR MaLR 4 137 -330 644 242 87 34 chr21 29158840 29159104 -5748466 + MLT1C LTR MaLR 138 415 -52 2240 82 0 3 chr21 29159107 29159410 -5748160 - AluY SINE Alu 0 311 27 359 226 136 40 chr21 29159848 29160047 -5747523 - LTR33A LTR ERVL -8 515 298 1103 230 48 14 chr21 29160409 29160872 -5746698 + MLT1D LTR MaLR 1 502 -3 330 87 0 0 chr21 29161375 29161421 -5746149 + (T)n Simple_repeat Simple_repeat 1 46 0 254 167 0 0 chr21 29162407 29162455 -5745115 + L2 LINE L2 3266 3313 0 626 111 0 0 chr21 29163056 29163146 -5744424 - AluSp/q SINE Alu -11 302 213 185 163 20 0 chr21 29163768 29163817 -5743753 + (TA)n Simple_repeat Simple_repeat 2 51 0 492 215 6 13 chr21 29163838 29163849 -5743721 + (TA)n Simple_repeat Simple_repeat 1 11 -146 2473 76 15 48 chr21 29163849 29164246 -5743324 - L1PA13 LINE L1 -4 6159 5776 492 215 6 13 chr21 29164246 29164392 -5743178 + (TA)n Simple_repeat Simple_repeat 11 157 0 271 178 0 0 chr21 29164396 29164441 -5743129 - L1PA13 LINE L1 -365 5796 5752 234 196 18 18 chr21 29164480 29164536 -5743034 + CT-rich Low_complexity Low_complexity 2 57 0 1192 258 93 16 chr21 29164582 29165013 -5742557 - MLT1C LTR MaLR -3 464 1 240 163 0 0 chr21 29165626 29165669 -5741901 + (TG)n Simple_repeat Simple_repeat 2 44 0 1772 138 34 20 chr21 29166459 29166757 -5740813 - THE1C LTR MaLR -2 373 72 786 294 17 51 chr21 29167143 29167436 -5740134 + MLT1E2-int LTR MaLR 961 1243 -128 1059 189 0 0 chr21 29167460 29167629 -5739941 - AluJo SINE Alu -23 289 121 378 239 0 43 chr21 29167634 29167728 -5739842 - AluS SINE Alu -227 75 1 268 213 0 13 chr21 29167733 29167808 -5739762 + MLT1E2-int LTR MaLR 1237 1310 -61 2205 207 91 60 chr21 29167851 29168453 -5739117 + MLT1E2 LTR MaLR 1 622 -4 3360 230 24 21 chr21 29169430 29170300 -5737270 + MER63C DNA MER1_type 57 929 -1 535 301 17 54 chr21 29170305 29170657 -5736913 - L2 LINE L2 -834 2480 2142 5881 113 14 30 chr21 29170746 29172404 -5735166 + L1PA12 LINE L1 4444 6092 -76 7642 30 5 0 chr21 29172404 29173476 -5734094 + L1PA4 LINE L1 5080 6155 0 512 161 0 0 chr21 29173476 29173561 -5734009 + L1PA12 LINE L1 6080 6166 -2 1805 236 42 86 chr21 29173929 29174463 -5733107 + LTR9 LTR ERV1 1 504 -108 2173 137 0 3 chr21 29174463 29174776 -5732794 - AluSx SINE Alu 0 312 1 1805 236 42 86 chr21 29174776 29174881 -5732689 + LTR9 LTR ERV1 504 612 0 296 216 92 59 chr21 29175587 29175740 -5731830 + MER104 DNA MER2_type 19 176 -4 1288 164 18 36 chr21 29177582 29177723 -5729847 - L1MB8 LINE L1 -6 6172 6037 2133 159 13 47 chr21 29177723 29178107 -5729463 + MLT1A2 LTR MaLR 4 374 0 1288 164 18 36 chr21 29178107 29178240 -5729330 - L1MB8 LINE L1 -141 6037 5903 311 169 28 56 chr21 29178240 29178311 -5729259 + L1MB8 LINE L1 5861 5929 -249 893 220 91 8 chr21 29178303 29178544 -5729026 - L1MB8 LINE L1 -499 5679 5419 641 223 18 12 chr21 29178645 29178811 -5728759 - L1MA10 LINE L1 -7 6327 6161 2509 174 10 5 chr21 29178814 29179228 -5728342 + Tigger1 DNA MER2_type 2 417 -2001 3452 156 33 15 chr21 29179275 29179620 -5727950 + Tigger1 DNA MER2_type 1826 2187 -231 1901 137 108 15 chr21 29179620 29179963 -5727607 - THE1C LTR MaLR 0 375 1 3452 156 33 15 chr21 29179963 29180200 -5727370 + Tigger1 DNA MER2_type 2187 2418 0 329 245 184 0 chr21 29180473 29180571 -5726999 + MIR SINE MIR 146 261 -1 3582 64 0 4 chr21 29181125 29181575 -5725995 + LTR7 LTR ERV1 1 448 -2 19897 96 58 53 chr21 29181577 29184851 -5722719 + HERVH LTR ERV1 1 3290 -4423 3489 107 0 4 chr21 29184850 29185346 -5722224 + HERVH LTR ERV1 3500 3993 -3720 4337 150 3 1 chr21 29185348 29186009 -5721561 + HERVH LTR ERV1 4488 5149 -2564 1381 125 23 5 chr21 29186010 29186226 -5721344 + HERVH LTR ERV1 5600 5819 -1894 2509 84 48 13 chr21 29186224 29186603 -5720967 + HERVH LTR ERV1 7322 7713 0 3665 60 0 4 chr21 29186603 29187053 -5720517 + LTR7 LTR ERV1 1 448 -2 29 28 0 0 chr21 29187136 29187172 -5720398 + AT_rich Low_complexity Low_complexity 1 36 0 2488 223 23 46 chr21 29187212 29187531 -5720039 + MER73 LTR ERVL 1 299 -345 6103 32 0 1 chr21 29187531 29188217 -5719353 - L1PA4 LINE L1 0 6155 5471 2488 223 23 46 chr21 29188217 29188543 -5719027 + MER73 LTR ERVL 299 631 -13 495 302 41 6 chr21 29188558 29188730 -5718840 - L1MC/D LINE L1 -2270 5538 5361 252 0 0 0 chr21 29188774 29188802 -5718768 + (TA)n Simple_repeat Simple_repeat 2 29 0 1866 180 17 11 chr21 29189318 29189668 -5717902 + L1PA16 LINE L1 5814 6165 -1 1642 85 9 0 chr21 29189713 29189924 -5717646 + L1PB1 LINE L1 5936 6148 -3 21 0 0 0 chr21 29190525 29190546 -5717024 + AT_rich Low_complexity Low_complexity 1 21 0 205 191 24 0 chr21 29190558 29190600 -5716970 + (CATA)n Simple_repeat Simple_repeat 4 46 0 936 191 48 48 chr21 29191314 29191440 -5716130 - MER6B DNA MER2_type -655 210 82 4769 75 7 2 chr21 29191440 29192027 -5715543 - L1PA8 LINE L1 0 6172 5583 936 191 48 48 chr21 29192027 29192110 -5715460 - MER6B DNA MER2_type -782 83 1 450 284 86 53 chr21 29192764 29193007 -5714563 - MIR SINE MIR -6 256 6 21 0 0 0 chr21 29193280 29193301 -5714269 + AT_rich Low_complexity Low_complexity 1 21 0 678 198 18 17 chr21 29196059 29196416 -5711154 + GA-rich Low_complexity Low_complexity 1 357 0 2574 140 22 50 chr21 29196981 29197425 -5710145 + MSTB1 LTR MaLR 1 432 0 583 216 16 81 chr21 29199134 29199319 -5708251 - LTR68 LTR ERV1 -286 454 282 6127 46 0 0 chr21 29199497 29200197 -5707373 + L1PA4 LINE L1 5455 6154 -1 383 157 11 22 chr21 29200243 29200332 -5707238 - LTR68 LTR ERV1 -652 88 1 935 147 16 147 chr21 29200522 29200774 -5706796 - MER20 DNA MER1_type 0 219 1 200 286 61 41 chr21 29201551 29201649 -5705921 + L2 LINE L2 3141 3240 -32 2425 211 61 36 chr21 29201894 29202471 -5705099 - MLT1E LTR MaLR 0 593 3 23 0 0 0 chr21 29202477 29202500 -5705070 + AT_rich Low_complexity Low_complexity 1 23 0 191 279 115 0 chr21 29203638 29203699 -5703871 - MIR3 SINE MIR -12 196 129 629 279 56 52 chr21 29204234 29204467 -5703103 - MIR SINE MIR -8 254 21 1923 164 7 0 chr21 29204614 29204912 -5702658 + AluSx SINE Alu 1 300 -12 210 37 0 0 chr21 29205268 29205295 -5702275 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 357 158 0 0 chr21 29206006 29206063 -5701507 + MSTD LTR MaLR 1 57 -339 821 208 44 6 chr21 29206102 29206285 -5701285 + MSTD LTR MaLR 207 396 0 23 0 0 0 chr21 29207161 29207184 -5700386 + AT_rich Low_complexity Low_complexity 1 23 0 1371 291 52 17 chr21 29207250 29207773 -5699797 + L1MCb LINE L1 1 541 -5504 2546 216 29 23 chr21 29207867 29208674 -5698896 + L1MCb LINE L1 555 1365 -4857 3999 207 21 38 chr21 29208715 29209542 -5698028 - MER21B LTR ERV1 -50 813 1 2045 276 42 42 chr21 29209542 29211136 -5696434 + L1MCb LINE L1 1563 3113 -3451 411 232 62 26 chr21 29211153 29211347 -5696223 + L1P LINE L1 2931 3131 -3015 3455 199 45 2 chr21 29211393 29212259 -5695311 + L1MC3 LINE L1 5895 6875 -910 863 147 58 26 chr21 29212259 29212415 -5695155 + FRAM SINE Alu 1 160 -16 715 151 0 9 chr21 29212418 29212524 -5695046 + AluSq/x SINE Alu 25 129 -184 1001 202 70 4 chr21 29212548 29213052 -5694518 + L1MC3 LINE L1 6879 7432 -353 626 319 57 44 chr21 29213065 29213618 -5693952 + L1MCa LINE L1 1004 1624 -4804 2176 93 0 0 chr21 29213618 29213896 -5693674 + AluSc SINE Alu 28 305 -4 626 319 57 44 chr21 29213896 29214164 -5693406 + L1MCa LINE L1 1624 1887 -4541 340 299 22 29 chr21 29214206 29214343 -5693227 + L1MCa LINE L1 2085 2220 -4387 2718 270 67 27 chr21 29214517 29215129 -5692441 + L1MCa LINE L1 2402 2988 -3438 2259 95 3 10 chr21 29215129 29215424 -5692146 + AluSx SINE Alu 3 295 -17 2718 270 67 27 chr21 29215424 29216272 -5691298 + L1MCa LINE L1 2988 3921 -2505 1992 227 81 69 chr21 29216317 29217421 -5690149 - L1M3e LINE L1 -5055 1975 6 531 212 62 14 chr21 29217605 29217751 -5689819 + L1MCa LINE L1 4809 4961 -1465 552 256 40 27 chr21 29217753 29218157 -5689413 + L1MCa LINE L1 5339 5747 -695 21 57 0 0 chr21 29218280 29218315 -5689255 + AT_rich Low_complexity Low_complexity 1 35 0 690 105 51 12 chr21 29219056 29219390 -5688180 + (CA)n Simple_repeat Simple_repeat 1 347 0 522 129 59 12 chr21 29219419 29219834 -5687736 + (CA)n Simple_repeat Simple_repeat 1 434 0 543 115 52 17 chr21 29219905 29220079 -5687491 + (CA)n Simple_repeat Simple_repeat 1 180 0 528 104 54 24 chr21 29220109 29220455 -5687115 + (CA)n Simple_repeat Simple_repeat 1 356 0 516 149 23 29 chr21 29220506 29220681 -5686889 + (CA)n Simple_repeat Simple_repeat 1 174 0 2678 122 46 18 chr21 29222480 29222914 -5684656 - Tigger2 DNA MER2_type 0 2718 2273 2072 114 3 3 chr21 29222924 29223243 -5684327 + AluSc SINE Alu 3 321 0 783 198 12 38 chr21 29223468 29223669 -5683901 - L1MCb LINE L1 -745 5819 5626 2190 128 0 3 chr21 29223669 29223982 -5683588 - AluSq SINE Alu -1 312 1 783 198 12 38 chr21 29223982 29224013 -5683557 - L1MCb LINE L1 -938 5626 5596 378 231 112 8 chr21 29224013 29224147 -5683423 - L1MCb LINE L1 -1568 4996 4849 206 260 0 0 chr21 29224170 29224220 -5683350 + T-rich Low_complexity Low_complexity 1 50 0 2035 205 58 18 chr21 29224237 29224685 -5682885 - MLT1C LTR MaLR 0 467 2 1305 247 54 7 chr21 29224686 29225091 -5682479 - L1MCb LINE L1 -1754 4810 4387 3647 242 61 40 chr21 29225081 29226494 -5681076 - L1MCb LINE L1 -2696 3868 2486 2093 97 0 11 chr21 29226494 29226820 -5680750 - AluSc SINE Alu 0 328 6 3647 242 61 40 chr21 29226820 29227875 -5679695 - L1MCb LINE L1 -4078 2486 1455 1928 139 3 36 chr21 29227875 29228206 -5679364 - AluSx SINE Alu 0 312 1 3647 242 61 40 chr21 29228206 29229203 -5678367 - L1MCb LINE L1 -5109 1455 167 497 229 15 15 chr21 29229225 29229356 -5678214 - L1MCb LINE L1 -6291 273 143 1296 149 51 9 chr21 29230070 29230285 -5677285 - AluJb SINE Alu -88 224 1 1631 216 66 28 chr21 29230447 29230874 -5676696 + LTR47B LTR ERVL 1 443 0 318 313 24 0 chr21 29231094 29231177 -5676393 - L2 LINE L2 -46 3226 3142 1231 210 87 13 chr21 29231418 29231728 -5675842 - MER58B DNA MER1_type -8 333 1 228 214 11 22 chr21 29232575 29232664 -5674906 + (TG)n Simple_repeat Simple_repeat 2 89 0 331 330 39 72 chr21 29232706 29233008 -5674562 - L2 LINE L2 -281 2991 2696 22 0 0 0 chr21 29233982 29234004 -5673566 + AT_rich Low_complexity Low_complexity 1 22 0 1947 179 55 0 chr21 29234093 29234457 -5673113 - MLT1B LTR MaLR -6 384 1 268 287 82 8 chr21 29235190 29235312 -5672258 - MIR SINE MIR -41 221 91 274 326 14 35 chr21 29235449 29235593 -5671977 + MIR SINE MIR 95 235 -27 23 33 0 0 chr21 29236408 29236438 -5671132 + AT_rich Low_complexity Low_complexity 1 30 0 269 321 0 0 chr21 29236807 29236888 -5670682 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 251 229 71 0 chr21 29237236 29237306 -5670264 - Charlie8 DNA MER1_type -2247 170 96 389 289 48 45 chr21 29237962 29238273 -5669297 - L1M4 LINE L1 -1099 5047 4736 518 223 0 4 chr21 29238742 29239022 -5668548 + (CA)n Simple_repeat Simple_repeat 1 278 0 180 200 0 0 chr21 29239035 29239095 -5668475 + (CA)n Simple_repeat Simple_repeat 2 61 0 452 192 6 16 chr21 29239126 29239308 -5668262 + (CA)n Simple_repeat Simple_repeat 1 180 0 322 227 16 0 chr21 29239368 29239633 -5667937 + (CA)n Simple_repeat Simple_repeat 1 269 0 454 254 61 56 chr21 29240015 29240212 -5667358 - MER58C DNA MER1_type -17 198 1 1543 179 3 35 chr21 29241306 29241596 -5665974 + AluJo SINE Alu 1 281 -31 198 0 0 0 chr21 29241599 29241621 -5665949 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 828 213 7 7 chr21 29241874 29242024 -5665546 - AluJo SINE Alu -113 199 50 1859 156 7 0 chr21 29242341 29242617 -5664953 + AluSx SINE Alu 3 280 -32 189 0 0 0 chr21 29242617 29242638 -5664932 + (TAAAA)n Simple_repeat Simple_repeat 5 25 0 245 208 0 0 chr21 29244183 29244231 -5663339 - L2 LINE L2 -8 3305 3258 237 344 86 31 chr21 29244229 29244357 -5663213 + L2 LINE L2 3138 3272 0 3371 265 59 63 chr21 29244489 29245855 -5661715 + L1ME2 LINE L1 12 1369 -5027 1510 189 25 4 chr21 29245855 29246135 -5661435 + AluJo SINE Alu 1 286 -26 3371 265 59 63 chr21 29246135 29246873 -5660697 + L1ME2 LINE L1 1369 2108 -4288 1652 215 25 3 chr21 29246875 29247229 -5660341 + L1ME2 LINE L1 5527 5888 -347 934 106 17 22 chr21 29247236 29247342 -5660228 + (GAAA)n Simple_repeat Simple_repeat 1 283 0 934 106 17 22 chr21 29247342 29247521 -5660049 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 430 281 41 0 chr21 29247549 29247695 -5659875 + L1ME2 LINE L1 5884 6035 -198 930 185 0 38 chr21 29247938 29248122 -5659448 - FRAM SINE Alu 0 176 1 2203 166 58 85 chr21 29249006 29249454 -5658116 + MLT1D LTR MaLR 1 460 -45 378 61 0 0 chr21 29249454 29249503 -5658067 + (TA)n Simple_repeat Simple_repeat 1 49 0 369 0 0 0 chr21 29249502 29249543 -5658027 + (GA)n Simple_repeat Simple_repeat 2 42 0 2203 166 58 85 chr21 29249503 29249544 -5658026 + MLT1D LTR MaLR 460 438 -67 2101 116 0 0 chr21 29249544 29249821 -5657749 - AluSx SINE Alu -35 277 1 2203 166 58 85 chr21 29249821 29249889 -5657681 + MLT1D LTR MaLR 437 505 0 333 143 19 9 chr21 29251967 29252072 -5655498 + (TA)n Simple_repeat Simple_repeat 1 106 0 358 189 34 108 chr21 29252148 29252296 -5655274 - L1MCa LINE L1 -4296 2130 1994 252 138 46 0 chr21 29252297 29252362 -5655208 + (TA)n Simple_repeat Simple_repeat 1 68 0 1746 234 128 19 chr21 29252375 29252858 -5654712 - MLT1H LTR MaLR 0 549 14 2337 159 5 13 chr21 29253162 29253540 -5654030 - THE1C LTR MaLR 0 375 1 415 303 104 60 chr21 29253660 29253977 -5653593 - HAL1 LINE L1 -2 2505 2175 404 307 90 5 chr21 29254019 29254208 -5653362 - HAL1b LINE L1 -437 911 707 188 0 74 0 chr21 29254275 29254302 -5653268 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 4391 79 20 0 chr21 29254471 29255014 -5652556 - MER41A LTR ERV1 0 554 1 1457 299 53 37 chr21 29255131 29255974 -5651596 - HAL1 LINE L1 -877 1630 774 5762 141 14 0 chr21 29256205 29257173 -5650397 - L1PA15 LINE L1 -3 6162 5185 2872 6 0 3 chr21 29257336 29257648 -5649922 + AluYa5 SINE Alu 1 311 0 251 298 0 0 chr21 29258818 29258875 -5648695 + MLT1J2 LTR MaLR 274 330 -120 740 247 105 37 chr21 29258939 29259632 -5647938 + L1ME3A LINE L1 5296 6091 -79 408 191 0 0 chr21 29259786 29259854 -5647716 + L2 LINE L2 3232 3299 -14 898 103 14 0 chr21 29259866 29260011 -5647559 + (GGAA)n Simple_repeat Simple_repeat 2 148 0 237 239 30 15 chr21 29260021 29260088 -5647482 + MLT1I LTR MaLR 340 407 -2 15289 145 13 17 chr21 29260147 29261184 -5646386 - Tigger1 DNA MER2_type 0 2418 1378 2233 121 3 3 chr21 29261184 29261491 -5646079 + AluSc SINE Alu 1 307 -2 15289 145 13 17 chr21 29261491 29262423 -5645147 - Tigger1 DNA MER2_type -1040 1378 458 2289 93 0 34 chr21 29262423 29262745 -5644825 + AluY SINE Alu 1 311 0 15289 145 13 17 chr21 29262745 29263202 -5644368 - Tigger1 DNA MER2_type -1960 458 1 309 151 0 0 chr21 29264052 29264105 -5643465 + T-rich Low_complexity Low_complexity 1 53 0 227 305 0 0 chr21 29264453 29264512 -5643058 - MIR SINE MIR -4 258 200 6768 206 3 7 chr21 29265582 29266828 -5640742 + L1 LINE L1 334 1574 -5991 4630 92 20 21 chr21 29266827 29267012 -5640558 + L1 LINE L1 2506 2690 -4875 2468 76 0 0 chr21 29267012 29267313 -5640257 + AluY SINE Alu 1 301 -10 4630 92 20 21 chr21 29267313 29267830 -5639740 + L1 LINE L1 2690 3207 -4358 914 88 9 0 chr21 29267833 29267947 -5639623 + AluY SINE Alu 1 115 -196 5045 155 17 2 chr21 29267954 29268121 -5639449 + L1 LINE L1 4930 5093 -2472 1178 41 29 6 chr21 29268121 29268293 -5639277 + (GAAA)n Simple_repeat Simple_repeat 1 176 0 5045 155 17 2 chr21 29268293 29268970 -5638600 + L1 LINE L1 5093 5786 -1779 604 113 15 165 chr21 29268977 29269110 -5638460 + AluJb SINE Alu 181 293 -19 285 202 10 20 chr21 29269123 29269222 -5638348 + CT-rich Low_complexity Low_complexity 3 100 0 419 178 11 11 chr21 29269242 29269332 -5638238 - MIR SINE MIR -4 258 169 2505 126 85 10 chr21 29269674 29270072 -5637498 - MSTA LTR MaLR 0 428 1 611 240 31 47 chr21 29273287 29273479 -5634091 + MER5A DNA MER1_type 1 189 0 291 54 0 0 chr21 29273968 29274005 -5633565 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 4626 155 5 14 chr21 29275929 29276711 -5630859 - L1PB3 LINE L1 -5 6149 5375 943 173 6 12 chr21 29276752 29276914 -5630656 + FRAM SINE Alu 1 161 -15 408 308 28 73 chr21 29278067 29278135 -5629435 - L3 LINE CR1 -547 1030 960 993 45 8 15 chr21 29278135 29278268 -5629302 - L1PA4 LINE L1 0 6155 6024 408 308 28 73 chr21 29278268 29278485 -5629085 - L3 LINE CR1 -617 960 758 342 293 51 0 chr21 29278526 29278683 -5628887 + L1ME4a LINE L1 5957 6121 0 23 0 0 0 chr21 29281475 29281498 -5626072 + AT_rich Low_complexity Low_complexity 1 23 0 432 0 0 0 chr21 29282196 29282244 -5625326 + (TG)n Simple_repeat Simple_repeat 1 48 0 671 170 61 34 chr21 29282271 29282418 -5625152 - MER20 DNA MER1_type -66 153 3 930 215 88 0 chr21 29283141 29283346 -5624224 - MER58A DNA MER1_type -1 223 1 205 345 78 0 chr21 29283372 29283488 -5624082 - L2 LINE L2 -7 3265 3141 383 251 44 60 chr21 29283570 29283753 -5623817 + L2 LINE L2 1713 1892 -1422 189 0 0 0 chr21 29283969 29283990 -5623580 + (A)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr21 29283990 29284011 -5623559 + (GA)n Simple_repeat Simple_repeat 2 22 0 2135 209 38 32 chr21 29285227 29285729 -5621841 - MLT1D LTR MaLR 0 505 1 1705 296 94 37 chr21 29286064 29286757 -5620813 + L2 LINE L2 1491 2143 -1170 2381 122 40 3 chr21 29286757 29287108 -5620462 - THE1B LTR MaLR 0 364 1 1705 296 94 37 chr21 29287108 29287473 -5620097 + L2 LINE L2 2143 2486 -827 2430 208 72 6 chr21 29287473 29287988 -5619582 + MER44D DNA MER2_type 2 605 0 1705 296 94 37 chr21 29287988 29288412 -5619158 + L2 LINE L2 2486 3086 -227 2345 94 3 0 chr21 29288993 29289290 -5618280 + AluSc SINE Alu 1 298 -11 21 0 0 0 chr21 29289732 29289753 -5617817 + AT_rich Low_complexity Low_complexity 1 21 0 294 152 30 45 chr21 29291422 29291488 -5616082 + AluS SINE Alu 6 70 -230 1821 116 24 0 chr21 29291677 29291927 -5615643 + AluSx SINE Alu 46 301 -11 823 103 34 11 chr21 29293341 29293516 -5614054 + (CA)n Simple_repeat Simple_repeat 2 180 0 639 74 33 107 chr21 29295792 29295877 -5611693 + L1MB3 LINE L1 6066 6141 -42 2189 128 0 0 chr21 29295877 29296174 -5611396 + AluSx SINE Alu 1 297 -15 639 74 33 107 chr21 29296174 29296209 -5611361 + L1MB3 LINE L1 6141 6177 -6 1625 162 16 53 chr21 29296564 29296867 -5610703 + AluJo SINE Alu 2 293 -19 83 21 0 0 chr21 29298575 29298672 -5608898 + AT_rich Low_complexity Low_complexity 1 97 0 192 202 262 0 chr21 29298726 29298810 -5608760 - L2 LINE L2 -1 3271 3166 193 328 31 0 chr21 29298906 29298970 -5608600 - L2 LINE L2 -244 3069 3004 420 221 41 23 chr21 29299371 29299480 -5608090 + (TCTA)n Simple_repeat Simple_repeat 4 120 -58 1949 156 0 0 chr21 29299480 29299788 -5607782 - AluSx SINE Alu 0 308 1 420 221 41 23 chr21 29299788 29299849 -5607721 + (TCTA)n Simple_repeat Simple_repeat 120 178 0 1457 222 143 118 chr21 29301739 29302808 -5604762 + MER52A LTR ERV1 660 1755 0 2332 99 0 0 chr21 29303007 29303311 -5604259 + AluSx SINE Alu 1 304 -8 1885 99 8 19 chr21 29303382 29303644 -5603926 - AluSx SINE Alu -17 295 37 1699 174 47 36 chr21 29303684 29304070 -5603500 - MLT1B LTR MaLR 0 390 1 2167 126 0 7 chr21 29304102 29304412 -5603158 + AluSc SINE Alu 1 308 -1 237 320 91 32 chr21 29305425 29305766 -5601804 + L1ME LINE L1 4664 5024 -1122 1074 220 40 101 chr21 29306139 29306517 -5601053 - MLT1A1 LTR MaLR -5 360 6 4157 110 55 0 chr21 29307003 29307605 -5599965 + MER41B LTR ERV1 1 635 0 3603 137 51 2 chr21 29307730 29308308 -5599262 - MER4B LTR ERV1 0 601 5 5517 176 39 4 chr21 29308847 29310763 -5596807 - L1PA16 LINE L1 -16 6150 4170 601 150 0 53 chr21 29311407 29311480 -5596090 + MLT1A1 LTR MaLR 259 325 -40 2235 106 0 3 chr21 29311480 29311822 -5595748 - AluSx SINE Alu 0 312 1 601 150 0 53 chr21 29311822 29311861 -5595709 + MLT1A1 LTR MaLR 325 365 0 2193 60 14 32 chr21 29312197 29312659 -5594911 + AluY SINE Alu 11 467 0 573 263 88 15 chr21 29314025 29314230 -5593340 - MLT1C LTR MaLR 0 467 248 200 261 43 0 chr21 29314236 29314305 -5593265 + (TCTCTG)n Simple_repeat Simple_repeat 2 73 0 973 126 0 0 chr21 29314835 29314978 -5592592 + AluSg/x SINE Alu 166 308 -2 318 274 8 0 chr21 29315008 29315132 -5592438 + L1ME LINE L1 5267 5391 -783 429 285 0 51 chr21 29315168 29315305 -5592265 + L1ME LINE L1 5473 5602 -519 599 0 0 14 chr21 29317774 29317846 -5589724 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 21 0 0 0 chr21 29319132 29319153 -5588417 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr21 29319242 29319277 -5588293 + AT_rich Low_complexity Low_complexity 1 35 0 724 172 75 11 chr21 29319302 29319476 -5588094 + MER33 DNA MER1_type 38 222 -102 739 44 0 0 chr21 29319494 29319584 -5587986 + AluYb8 SINE Alu 217 306 -12 639 204 15 29 chr21 29319706 29319843 -5587727 + AluJo SINE Alu 3 137 -175 261 0 0 0 chr21 29319953 29319982 -5587588 + (CA)n Simple_repeat Simple_repeat 2 30 0 994 115 34 0 chr21 29320226 29320374 -5587196 - AluSg/x SINE Alu -3 307 155 1810 175 78 6 chr21 29321550 29321898 -5585672 - MLT1B LTR MaLR 0 390 18 199 270 0 0 chr21 29322163 29322200 -5585370 - L2 LINE L2 -19 3294 3258 1098 275 75 24 chr21 29324338 29324713 -5582857 - MLT1D-int LTR MaLR -107 1264 871 662 260 11 17 chr21 29324799 29324980 -5582590 - MLT1D-int LTR MaLR -498 873 694 1626 240 34 66 chr21 29325114 29325711 -5581859 - MLT1D-int LTR MaLR -710 661 87 2513 87 3 0 chr21 29325711 29326023 -5581547 - AluSp SINE Alu 0 313 1 1626 240 34 66 chr21 29326023 29326108 -5581462 - MLT1D-int LTR MaLR -1284 87 1 2056 197 25 48 chr21 29326108 29326610 -5580960 - MLT1D LTR MaLR 0 505 14 2818 118 21 12 chr21 29326610 29327034 -5580536 + MSTA LTR MaLR 1 428 0 2056 197 25 48 chr21 29327034 29327048 -5580522 - MLT1D LTR MaLR -491 14 1 23 54 0 0 chr21 29328016 29328053 -5579517 + AT_rich Low_complexity Low_complexity 1 37 0 714 148 14 21 chr21 29329331 29329473 -5578097 - L1MB1 LINE L1 0 6168 6028 1116 59 0 0 chr21 29329473 29329604 -5577966 - AluSp/q SINE Alu -14 299 169 1159 167 24 32 chr21 29329605 29329851 -5577719 - L1MB1 LINE L1 -150 6039 5796 378 0 0 0 chr21 29329854 29329896 -5577674 + (TG)n Simple_repeat Simple_repeat 2 43 0 1906 222 23 5 chr21 29329901 29330569 -5577001 - L1MB1 LINE L1 -476 5692 5015 1328 111 31 41 chr21 29331019 29331297 -5576273 + THE1B LTR MaLR 1 364 0 515 304 111 72 chr21 29332099 29332461 -5575109 + L1ME LINE L1 67 442 -5677 518 243 20 14 chr21 29332575 29332723 -5574847 - MER3 DNA MER1_type -47 162 14 2217 104 0 0 chr21 29333306 29333584 -5573986 + AluSg SINE Alu 23 300 -10 304 330 34 8 chr21 29333795 29333913 -5573657 + L1ME LINE L1 4846 4966 -1163 2226 106 3 31 chr21 29334599 29334919 -5572651 + AluSx SINE Alu 1 311 -1 468 244 84 0 chr21 29335281 29335412 -5572158 - MLT2E LTR ERVL -469 159 18 318 374 16 39 chr21 29335453 29335635 -5571935 + L1ME LINE L1 5393 5570 -579 23 97 0 0 chr21 29336110 29336182 -5571388 + AT_rich Low_complexity Low_complexity 1 72 0 323 269 157 0 chr21 29337057 29337165 -5570405 - L2 LINE L2 -1 3312 3188 863 335 75 22 chr21 29337551 29338243 -5569327 - L2 LINE L2 -557 2757 2029 2038 139 14 3 chr21 29338566 29339037 -5568533 + AluSx SINE Alu 2 475 0 269 158 35 0 chr21 29339037 29339094 -5568476 + GA-rich Low_complexity Low_complexity 2 60 0 219 161 48 32 chr21 29339376 29339438 -5568132 - L2 LINE L2 -2910 404 342 374 242 31 31 chr21 29339774 29339926 -5567644 - MLT1A2 LTR MaLR -28 515 236 2355 72 14 0 chr21 29340727 29341045 -5566525 + AluSc SINE Alu 1 309 0 2297 116 0 0 chr21 29341494 29341795 -5565775 - AluSx SINE Alu -10 302 2 1922 51 0 21 chr21 29341869 29342103 -5565467 - AluY SINE Alu -1 310 82 365 266 95 12 chr21 29342238 29342407 -5565163 - LTR67 LTR ERVL 0 557 375 2248 128 3 0 chr21 29342421 29342727 -5564843 + AluSx SINE Alu 1 307 -5 6003 34 2 1 chr21 29342986 29343008 -5564562 + L1P LINE L1 2680 2700 -3446 5419 23 0 0 chr21 29343008 29343623 -5563947 - L1PA3 LINE L1 0 6155 5541 6003 34 2 1 chr21 29343623 29344385 -5563185 + L1P LINE L1 2700 3465 -2681 2163 83 35 14 chr21 29344927 29345217 -5562353 - AluY SINE Alu -15 296 1 2198 149 24 5 chr21 29345876 29346286 -5561284 - L1MB3 LINE L1 -11 6172 5755 2323 106 0 7 chr21 29346823 29347124 -5560446 + AluJb SINE Alu 1 299 -13 2397 94 7 0 chr21 29347856 29348163 -5559407 - AluSc SINE Alu 0 309 1 293 247 82 57 chr21 29348236 29348394 -5559176 + LTR41 LTR ERVL 2 163 -610 3520 105 5 84 chr21 29348706 29349278 -5558292 - MER1A DNA MER1_type 0 527 1 705 299 33 17 chr21 29349596 29349837 -5557733 - MIR SINE MIR -2 260 16 195 118 0 29 chr21 29350284 29350318 -5557252 + L2 LINE L2 3193 3225 -88 2390 82 7 0 chr21 29352024 29352316 -5555254 + AluSp SINE Alu 1 294 -19 2238 94 19 43 chr21 29352582 29352644 -5554926 - L1MA5A LINE L1 -2 6295 6233 2411 90 0 10 chr21 29352644 29352944 -5554626 - AluSx SINE Alu -14 298 2 2238 94 19 43 chr21 29352944 29353255 -5554315 - L1MA5A LINE L1 -64 6233 5931 1893 224 75 4 chr21 29353381 29353850 -5553720 - MLT1D LTR MaLR -3 502 1 599 297 42 5 chr21 29353951 29354163 -5553407 + L1MEc LINE L1 51 270 -6126 2421 97 0 3 chr21 29354284 29354595 -5552975 + AluSg SINE Alu 1 310 0 1972 176 0 10 chr21 29355144 29355457 -5552113 + AluJo SINE Alu 1 310 -2 857 306 33 26 chr21 29355493 29356105 -5551465 + L1MEc LINE L1 731 1346 -5050 638 195 0 17 chr21 29356105 29356223 -5551347 - MLT1A1 LTR MaLR 0 374 259 738 144 23 15 chr21 29356230 29356362 -5551208 - MLT1A1 LTR MaLR -220 145 13 925 255 60 84 chr21 29356394 29357060 -5550510 + L1MEc LINE L1 1389 2038 -4358 1060 143 33 52 chr21 29357071 29357281 -5550289 + MER2 DNA MER2_type 1 206 -138 306 254 0 0 chr21 29357309 29357380 -5550190 + MER2 DNA MER2_type 274 344 0 216 97 0 0 chr21 29357793 29357824 -5549746 + (TG)n Simple_repeat Simple_repeat 2 32 0 180 284 69 52 chr21 29359224 29359340 -5548230 - L2 LINE L2 -212 3060 2943 1967 133 10 27 chr21 29359494 29359813 -5547757 + AluSx SINE Alu 1 312 0 271 220 66 33 chr21 29361218 29361309 -5546261 + MIR SINE MIR 48 141 -121 412 276 138 35 chr21 29361802 29362085 -5545485 + L2 LINE L2 2007 2318 -996 494 256 25 0 chr21 29362642 29362763 -5544807 + MER52A LTR ERV1 1 124 -1631 4048 179 42 27 chr21 29362739 29364125 -5543445 + MER52A LTR ERV1 235 1755 0 441 301 66 63 chr21 29364150 29364452 -5543118 + L2 LINE L2 2457 2759 -555 2079 153 119 18 chr21 29364762 29365148 -5542422 + MSTB LTR MaLR 2 426 0 553 212 42 11 chr21 29365759 29366011 -5541559 + (CA)n Simple_repeat Simple_repeat 1 259 0 189 0 0 0 chr21 29367183 29367204 -5540366 + (TGG)n Simple_repeat Simple_repeat 3 23 0 225 65 0 0 chr21 29368076 29368107 -5539463 + (TC)n Simple_repeat Simple_repeat 2 32 0 22 0 0 0 chr21 29368258 29368280 -5539290 + AT_rich Low_complexity Low_complexity 1 22 0 655 283 81 0 chr21 29368795 29368993 -5538577 - MIR SINE MIR -16 246 33 417 258 94 8 chr21 29370231 29370359 -5537211 - MLT1B LTR MaLR -2 388 250 342 283 123 43 chr21 29370587 29370725 -5536845 - MIR3 SINE MIR -58 150 2 1612 227 0 3 chr21 29371765 29372078 -5535492 - AluJo SINE Alu 0 312 1 1610 164 87 0 chr21 29372080 29372367 -5535203 - AluJo SINE Alu 0 312 1 343 257 57 9 chr21 29374157 29374262 -5533308 + MER91C DNA MER1_type 14 123 -17 401 223 41 50 chr21 29375534 29375655 -5531915 + MIR SINE MIR 114 233 -29 218 191 59 44 chr21 29375650 29375718 -5531852 + MIR SINE MIR 165 233 -29 243 191 44 29 chr21 29375777 29375845 -5531725 + MIR SINE MIR 165 233 -29 191 220 60 20 chr21 29375840 29375890 -5531680 + MIR SINE MIR 165 216 -46 358 146 40 54 chr21 29376678 29377201 -5530369 + (TG)n Simple_repeat Simple_repeat 1 516 0 239 191 16 16 chr21 29377233 29377296 -5530274 + (TG)n Simple_repeat Simple_repeat 1 63 0 427 217 248 0 chr21 29377886 29378015 -5529555 + MIR SINE MIR 94 254 -8 371 119 15 0 chr21 29378166 29378233 -5529337 + (GA)n Simple_repeat Simple_repeat 1 68 0 2348 109 41 19 chr21 29378550 29378917 -5528653 - THE1C LTR MaLR 0 375 1 563 275 0 36 chr21 29379602 29379740 -5527830 - L2 LINE L2 -1 3312 3180 330 200 0 0 chr21 29379835 29379890 -5527680 + polypurine Low_complexity Low_complexity 2 56 0 575 209 8 25 chr21 29379896 29380136 -5527434 + GA-rich Low_complexity Low_complexity 1 236 0 1782 276 105 29 chr21 29380209 29381237 -5526333 - L2 LINE L2 -278 3035 1928 2223 108 10 3 chr21 29381303 29381598 -5525972 - AluSc SINE Alu -12 297 1 181 339 0 0 chr21 29382101 29382157 -5525413 + MIR SINE MIR 93 148 -114 207 0 0 0 chr21 29382763 29382786 -5524784 + (CAACC)n Simple_repeat Simple_repeat 2 24 0 331 362 75 0 chr21 29382933 29383107 -5524463 - MIR SINE MIR 0 262 76 2018 141 3 38 chr21 29383305 29383625 -5523945 + AluSq SINE Alu 1 309 -4 5222 142 46 29 chr21 29383627 29384642 -5522928 + Tigger3b DNA MER2_type 199 1231 0 271 228 118 16 chr21 29384822 29384949 -5522621 - HAL1 LINE L1 -874 1633 1494 398 341 65 42 chr21 29385070 29385378 -5522192 - HAL1 LINE L1 -1215 1292 978 209 293 13 0 chr21 29386211 29386286 -5521284 + MER5B DNA MER1_type 1 76 -102 301 146 0 0 chr21 29386717 29386772 -5520798 + L1PB3 LINE L1 6078 6132 -22 449 47 16 0 chr21 29386797 29386861 -5520709 + (TA)n Simple_repeat Simple_repeat 1 65 0 2456 81 3 0 chr21 29386955 29387265 -5520305 + AluY SINE Alu 1 311 0 914 255 80 30 chr21 29387678 29387845 -5519725 - MER104 DNA MER2_type -214 1681 1524 1378 242 66 35 chr21 29387845 29388333 -5519237 - MLT1D LTR MaLR -2 503 1 914 255 80 30 chr21 29388333 29388526 -5519044 - MER104 DNA MER2_type -371 1524 1132 204 315 63 8 chr21 29389635 29389762 -5517808 + L2 LINE L2 2572 2705 -609 269 301 65 8 chr21 29389782 29389905 -5517665 + L2 LINE L2 3136 3265 -7 362 182 39 0 chr21 29390131 29390208 -5517362 + MIR SINE MIR 112 191 -71 737 217 130 16 chr21 29390242 29390495 -5517075 - L1MC5 LINE L1 -182 7779 7498 484 147 0 0 chr21 29390577 29390652 -5516918 - MER58A DNA MER1_type -7 100 26 1768 207 81 85 chr21 29390676 29391382 -5516188 - L1MC5 LINE L1 -623 7338 6636 200 200 22 0 chr21 29393542 29393587 -5513983 + G-rich Low_complexity Low_complexity 3 48 0 24 0 0 0 chr21 29394601 29394625 -5512945 + GC_rich Low_complexity Low_complexity 1 24 0 205 162 0 0 chr21 29395345 29395382 -5512188 + C-rich Low_complexity Low_complexity 1 37 0 744 233 34 10 chr21 29399344 29399550 -5508020 - MLT1C LTR MaLR -256 211 1 2289 98 0 14 chr21 29399826 29400123 -5507447 + AluSx SINE Alu 1 293 -19 2321 90 13 0 chr21 29400506 29400805 -5506765 - AluSc SINE Alu -6 303 1 549 273 17 34 chr21 29402327 29402503 -5505067 + MIR3 SINE MIR 26 198 -10 196 294 0 0 chr21 29402774 29402825 -5504745 - MER5A DNA MER1_type -76 113 63 181 326 11 67 chr21 29403977 29404066 -5503504 + MIR SINE MIR 173 256 -6 973 224 28 19 chr21 29404309 29404523 -5503047 + MER20 DNA MER1_type 4 219 0 1777 149 31 38 chr21 29404819 29405107 -5502463 + AluJo SINE Alu 1 286 -26 258 149 26 129 chr21 29405608 29405802 -5501768 + (TGAG)n Simple_repeat Simple_repeat 2 175 0 2591 150 101 11 chr21 29406250 29406696 -5500874 - MER66B LTR ERV1 0 486 1 13474 118 8 22 chr21 29406696 29408794 -5498776 - MER66B-int LTR ERV1 0 6676 4608 414 255 102 25 chr21 29408905 29409062 -5498508 + MER4B-int LTR ERV1 6395 6563 -195 9317 238 86 66 chr21 29409080 29412967 -5494603 - MER66B-int LTR ERV1 -2709 3967 1 3080 151 10 4 chr21 29412967 29413450 -5494120 - MER66B LTR ERV1 0 486 1 325 361 52 5 chr21 29413466 29413660 -5493910 - LTR16C LTR ERVL -134 357 155 2238 144 72 19 chr21 29414749 29415178 -5492392 - LTR47A LTR ERVL 0 452 1 680 251 72 30 chr21 29415381 29415644 -5491926 - HAL1 LINE L1 -941 1566 1293 805 243 16 38 chr21 29415745 29416058 -5491512 - HAL1 LINE L1 -1409 1098 793 3139 74 19 61 chr21 29416102 29416563 -5491007 - MLT2A1 LTR ERVL -2 442 1 20252 55 9 2 chr21 29416563 29418116 -5489454 - HERVL-A1 LTR ERVL 0 5654 3083 20390 55 11 2 chr21 29418116 29420681 -5486889 - HERVL LTR ERVL -1554 4100 1511 1154 198 18 9 chr21 29421419 29421641 -5485929 + MER58A DNA MER1_type 1 224 0 2211 117 0 46 chr21 29422369 29422695 -5484875 + AluSx SINE Alu 1 311 -1 492 247 67 0 chr21 29422764 29422914 -5484656 + L1MC4a LINE L1 5683 5842 -1966 1622 192 11 0 chr21 29423321 29423626 -5483944 - AluJb SINE Alu 0 308 1 183 42 0 0 chr21 29423633 29423657 -5483913 + (T)n Simple_repeat Simple_repeat 1 24 0 641 216 105 24 chr21 29423673 29424105 -5483465 + Charlie7 DNA MER1_type 1600 2080 -532 520 279 43 0 chr21 29424111 29424251 -5483319 - MIR SINE MIR -115 147 2 2129 142 3 0 chr21 29424355 29424657 -5482913 - AluSx SINE Alu -9 303 1 342 0 0 0 chr21 29425216 29425254 -5482316 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2302 50 0 0 chr21 29425254 29425531 -5482039 - L1PA5 LINE L1 -16 6138 5862 202 214 0 36 chr21 29425642 29425698 -5481872 + CT-rich Low_complexity Low_complexity 3 56 0 917 28 0 0 chr21 29426245 29426353 -5481217 - L1PA4 LINE L1 -221 5933 5826 1804 41 9 0 chr21 29426353 29426567 -5481003 + L1PA4 LINE L1 5935 6155 0 1681 160 57 43 chr21 29426919 29427288 -5480282 + MLT1B LTR MaLR 1 374 -16 859 281 45 45 chr21 29429393 29429862 -5477708 - L2 LINE L2 -17 3296 2828 819 260 53 31 chr21 29430296 29430422 -5477148 - L2 LINE L2 -1472 1842 1720 1884 95 0 84 chr21 29430422 29430707 -5476863 - AluSq SINE Alu -52 261 1 819 260 53 31 chr21 29430707 29430899 -5476671 - L2 LINE L2 -1594 1720 1517 190 246 87 29 chr21 29432211 29432280 -5475290 + L2 LINE L2 3241 3313 0 2637 174 25 15 chr21 29432302 29432445 -5475125 + L1MB3 LINE L1 5649 5789 -394 1588 210 48 14 chr21 29432445 29432798 -5474772 - MLT1A1 LTR MaLR 0 365 1 2637 174 25 15 chr21 29432798 29433184 -5474386 + L1MB3 LINE L1 5789 6183 0 4499 171 40 16 chr21 29436553 29437445 -5470125 + MER49 LTR ERV1 1 914 -9 1824 197 19 14 chr21 29438443 29438804 -5468766 - MLT1A1 LTR MaLR -2 363 1 592 335 43 4 chr21 29438856 29439110 -5468460 - LTR16C LTR ERVL -81 410 147 2267 92 0 3 chr21 29439859 29440151 -5467419 + AluSg SINE Alu 1 291 -19 385 232 0 12 chr21 29441065 29441147 -5466423 - L2 LINE L2 0 3313 3233 2444 86 3 0 chr21 29443292 29443595 -5463975 - AluSg SINE Alu -6 304 1 598 247 32 16 chr21 29444256 29444442 -5463128 + MLT1C LTR MaLR 276 464 -3 648 311 31 8 chr21 29444546 29444803 -5462767 + HAL1b LINE L1 328 590 -758 229 224 65 37 chr21 29444874 29444981 -5462589 + HAL1b LINE L1 686 795 -553 2488 69 0 0 chr21 29445236 29445527 -5462043 - AluSc SINE Alu -18 291 1 4194 193 57 4 chr21 29446127 29446941 -5460629 - MER21B LTR ERV1 0 863 7 212 133 44 0 chr21 29447061 29447106 -5460464 + (TA)n Simple_repeat Simple_repeat 1 47 0 916 114 0 50 chr21 29447279 29447419 -5460151 + FLAM_C SINE Alu 1 133 0 2546 49 0 10 chr21 29447910 29448218 -5459352 + AluY SINE Alu 1 305 -6 634 301 51 9 chr21 29448393 29448609 -5458961 + MIR SINE MIR 15 239 -23 656 298 90 35 chr21 29448710 29449363 -5458207 - L2 LINE L2 -252 3061 2328 1020 237 74 51 chr21 29449380 29449438 -5458132 - MLT1C LTR MaLR -7 460 405 2115 132 7 7 chr21 29449438 29449734 -5457836 + AluJo SINE Alu 1 296 -16 1020 237 74 51 chr21 29449734 29450123 -5457447 - MLT1C LTR MaLR -62 405 3 974 277 111 5 chr21 29450124 29450521 -5457049 - L2 LINE L2 -982 2332 1894 2100 89 89 0 chr21 29450570 29450851 -5456719 - AluY SINE Alu -1 310 5 1640 262 64 48 chr21 29451084 29451319 -5456251 + L1ME3 LINE L1 5393 5623 -539 2390 88 0 0 chr21 29451319 29451616 -5455954 + AluY SINE Alu 1 297 -14 1640 262 64 48 chr21 29451616 29452040 -5455530 + L1ME3 LINE L1 5623 6062 -100 273 241 0 0 chr21 29452836 29452890 -5454680 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 244 273 80 11 chr21 29454318 29454406 -5453164 - MIR3 SINE MIR -28 180 87 244 238 158 10 chr21 29454417 29454518 -5453052 - MER20B DNA MER1_type 0 784 669 2256 151 66 12 chr21 29454741 29455151 -5452419 - MSTB1 LTR MaLR 0 432 1 755 191 153 11 chr21 29458418 29458601 -5448969 - MER3 DNA MER1_type 0 209 1 2364 157 47 10 chr21 29458818 29459227 -5448343 + MSTB LTR MaLR 1 424 -2 2408 57 3 3 chr21 29459235 29459518 -5448052 - AluY SINE Alu -12 299 17 882 256 13 22 chr21 29459570 29459820 -5447750 - MIR SINE MIR 0 262 18 2241 112 0 0 chr21 29460045 29460339 -5447231 + AluSx SINE Alu 1 294 -18 2222 122 36 33 chr21 29460363 29460723 -5446847 + THE1B LTR MaLR 4 364 0 307 228 0 0 chr21 29460724 29460781 -5446789 + MER58 DNA MER1_type 1 57 -158 248 333 0 0 chr21 29461677 29461773 -5445797 - L1M4 LINE L1 -373 5805 5710 1691 193 3 17 chr21 29461921 29462216 -5445354 + AluJo SINE Alu 1 291 -21 306 73 0 0 chr21 29462217 29462258 -5445312 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 233 291 70 0 chr21 29462583 29462669 -5444901 + L2 LINE L2 2926 3017 -296 2393 60 0 4 chr21 29463536 29463854 -5443716 + AluSc SINE Alu 1 317 0 4147 23 0 0 chr21 29464863 29465337 -5442233 + L1PA2 LINE L1 5682 6155 0 2014 166 3 6 chr21 29465734 29466047 -5441523 - AluSx SINE Alu 0 312 1 459 237 209 0 chr21 29466812 29466951 -5440619 - MIR SINE MIR -32 230 63 252 43 43 21 chr21 29469258 29469305 -5438265 + (TTTTA)n Simple_repeat Simple_repeat 1 48 0 2222 79 4 0 chr21 29469305 29469582 -5437988 - AluSg SINE Alu -32 278 1 2937 102 11 33 chr21 29470634 29471094 -5436476 - LTR7 LTR ERV1 0 450 1 351 44 0 0 chr21 29471234 29471279 -5436291 + (TG)n Simple_repeat Simple_repeat 2 46 0 24 53 0 0 chr21 29472599 29472637 -5434933 + AT_rich Low_complexity Low_complexity 1 38 0 268 190 0 0 chr21 29476556 29476614 -5430956 - L2 LINE L2 -215 3057 3000 494 191 104 33 chr21 29476693 29476908 -5430662 + MIR SINE MIR 3 235 -27 678 291 53 4 chr21 29477600 29477844 -5429726 - MLT1H LTR MaLR -293 256 1 2467 87 3 0 chr21 29477889 29478199 -5429371 + AluSx SINE Alu 1 311 -1 2316 93 0 7 chr21 29479530 29479830 -5427740 + AluSg SINE Alu 1 298 -12 534 284 140 40 chr21 29481292 29481891 -5425679 - L2 LINE L2 -677 2637 1979 249 350 50 0 chr21 29481949 29482069 -5425501 + L2 LINE L2 3136 3261 -11 4318 115 37 69 chr21 29482089 29482458 -5425112 + MER4E LTR ERV1 1 381 -385 2841 80 0 8 chr21 29482458 29482832 -5424738 - L1PA7 LINE L1 0 6154 5784 4318 115 37 69 chr21 29482832 29483254 -5424316 + MER4E LTR ERV1 381 766 0 301 244 70 0 chr21 29483850 29483936 -5423634 + MIR SINE MIR 164 255 -7 23 54 0 0 chr21 29485812 29485849 -5421721 + AT_rich Low_complexity Low_complexity 1 37 0 239 128 0 0 chr21 29486094 29486133 -5421437 - MLT1F1 LTR MaLR -2 565 527 1623 161 12 46 chr21 29486186 29486509 -5421061 - AluJb SINE Alu 0 312 1 1726 172 7 10 chr21 29486513 29486815 -5420755 - AluJb SINE Alu -11 301 1 553 258 111 59 chr21 29486942 29487213 -5420357 - MLT1F LTR MaLR -254 288 4 28 0 0 0 chr21 29487257 29487285 -5420285 + AT_rich Low_complexity Low_complexity 1 28 0 305 330 71 0 chr21 29487314 29487511 -5420059 - L1MC4a LINE L1 -1918 5890 5680 811 262 66 21 chr21 29488174 29488506 -5419064 - L1MC4 LINE L1 0 8042 7696 632 321 91 13 chr21 29488685 29489081 -5418489 - L1MC4a LINE L1 -1263 4883 4457 367 308 96 23 chr21 29489100 29489360 -5418210 - L1MC4a LINE L1 -1718 4428 4150 695 288 47 52 chr21 29489933 29490569 -5417001 - L1MEd LINE L1 -875 1615 889 1699 172 7 20 chr21 29490671 29490769 -5416801 + AluJo SINE Alu 1 99 -213 2208 146 85 10 chr21 29490769 29491167 -5416403 - MSTA LTR MaLR 0 428 1 1699 172 7 20 chr21 29491167 29491370 -5416200 + AluJo SINE Alu 99 298 -14 944 266 46 7 chr21 29491520 29491802 -5415768 - L1MC4a LINE L1 -1961 5847 5555 618 219 55 27 chr21 29491850 29492069 -5415501 - L1MC4a LINE L1 -2329 5479 5255 528 272 33 47 chr21 29492671 29492884 -5414686 - L1MEd LINE L1 -5341 778 569 327 25 0 0 chr21 29493312 29493352 -5414218 + (TG)n Simple_repeat Simple_repeat 2 41 0 189 275 21 92 chr21 29493429 29493571 -5413999 + MER5B DNA MER1_type 26 157 -21 201 274 16 66 chr21 29494040 29494162 -5413408 - MIR3 SINE MIR -6 202 84 864 244 41 8 chr21 29494458 29494700 -5412870 - MIR SINE MIR 0 262 13 671 174 76 23 chr21 29495000 29495132 -5412438 + FAM SINE Alu 34 172 -13 2265 116 3 0 chr21 29495313 29495624 -5411946 - AluSp SINE Alu -1 312 1 3037 221 60 32 chr21 29495719 29496792 -5410778 - L1ME1 LINE L1 -5 6230 5126 705 227 7 20 chr21 29496806 29496956 -5410614 - FRAM SINE Alu -30 146 1 2207 253 36 1 chr21 29496957 29497649 -5409921 - L1ME1 LINE L1 -3269 2946 2231 580 222 26 8 chr21 29497652 29497769 -5409801 + MER58 DNA MER1_type 1 119 -222 381 82 0 0 chr21 29497778 29497827 -5409743 + MER58 DNA MER1_type 2366 2414 -6 1613 253 90 43 chr21 29497833 29499200 -5408370 - L1ME1 LINE L1 -4121 2275 824 1219 170 0 58 chr21 29499206 29499255 -5408315 + MLT1A1 LTR MaLR 1 51 -314 6827 107 34 27 chr21 29499255 29500319 -5407251 - MER11C LTR ERVK 0 1071 1 1219 170 0 58 chr21 29500319 29500510 -5407060 + MLT1A1 LTR MaLR 51 227 -138 2300 100 0 3 chr21 29505684 29505983 -5401587 + AluSx SINE Alu 1 298 -14 182 156 47 62 chr21 29506885 29506949 -5400621 - MER5A DNA MER1_type -88 101 39 205 237 114 26 chr21 29510075 29510189 -5397381 - MIR SINE MIR -133 129 6 2180 204 38 15 chr21 29510572 29511106 -5396464 + MER74A LTR ERVL 4 549 -9 345 192 0 26 chr21 29511667 29511744 -5395826 + MLT2B1 LTR ERVL 1 75 -339 1300 213 77 40 chr21 29511744 29512120 -5395450 - MLT1B LTR MaLR 0 390 1 1480 191 100 65 chr21 29512120 29512490 -5395080 + MLT2B1 LTR ERVL 76 465 -55 404 37 19 0 chr21 29512490 29512544 -5395026 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 1480 191 100 65 chr21 29512544 29512603 -5394967 + MLT2B1 LTR ERVL 465 520 0 575 250 26 0 chr21 29513304 29513460 -5394110 + MIR SINE MIR 71 230 -32 22 35 0 0 chr21 29513479 29513508 -5394062 + AT_rich Low_complexity Low_complexity 1 29 0 964 351 63 26 chr21 29513662 29514607 -5392963 - L1M4 LINE L1 -1065 5081 4102 247 294 136 26 chr21 29514660 29515235 -5392335 - L1M4 LINE L1 -2135 4011 3374 2106 100 11 84 chr21 29515735 29516094 -5391476 - MER1B DNA MER1_type 0 339 7 272 247 68 0 chr21 29516115 29516188 -5391382 - L1M4 LINE L1 -3393 2753 2676 343 289 94 5 chr21 29517297 29517498 -5390072 + L1ME4a LINE L1 5666 5884 -237 2947 144 10 32 chr21 29518468 29518961 -5388609 - MER66B LTR ERV1 0 486 5 3445 108 3 71 chr21 29518969 29519565 -5388005 + LTR12 LTR ERV1 20 538 -133 221 162 270 0 chr21 29520461 29520535 -5387035 - MER5A DNA MER1_type -83 106 13 216 273 0 118 chr21 29520705 29520815 -5386755 + L2 LINE L2 3176 3272 0 227 191 0 0 chr21 29520894 29520936 -5386634 + (TG)n Simple_repeat Simple_repeat 1 42 0 329 235 35 24 chr21 29521394 29521479 -5386091 + L2 LINE L2 3228 3313 0 537 247 67 82 chr21 29521775 29522030 -5385540 - L2 LINE L2 0 3313 3063 225 266 133 39 chr21 29522606 29522734 -5384836 + MIR3 SINE MIR 62 201 -7 762 181 170 11 chr21 29523008 29523196 -5384374 + MER20 DNA MER1_type 1 218 -1 474 267 35 17 chr21 29523207 29523379 -5384191 + MER5B DNA MER1_type 1 175 -3 2600 155 52 4 chr21 29523886 29524347 -5383223 + L1MA8 LINE L1 5153 5590 -701 713 149 16 0 chr21 29524347 29524466 -5383104 + L1MA8 LINE L1 6158 6280 -11 2600 155 52 4 chr21 29524466 29524720 -5382850 + L1MA8 LINE L1 5590 6280 -11 5753 128 9 11 chr21 29524572 29525484 -5382086 + L1PA16 LINE L1 5254 6163 -3 11185 33 5 1 chr21 29525489 29527575 -5379995 + L1PA5 LINE L1 4066 6154 0 183 80 0 0 chr21 29527670 29527695 -5379875 + (TG)n Simple_repeat Simple_repeat 1 25 0 209 264 64 45 chr21 29528249 29528359 -5379211 + MIR3 SINE MIR 96 207 -1 511 141 0 30 chr21 29528521 29528620 -5378950 - L1P LINE L1 -763 5403 5308 5154 140 33 4 chr21 29528674 29529512 -5378058 - Tigger1 DNA MER2_type -109 2309 1447 1737 149 26 23 chr21 29529519 29529828 -5377742 + MER101 LTR ERV1 165 474 0 279 0 0 0 chr21 29530229 29530260 -5377310 + (TG)n Simple_repeat Simple_repeat 1 31 0 14412 138 36 10 chr21 29531901 29533127 -5374443 - Tigger1 DNA MER2_type 0 2418 1226 881 143 19 19 chr21 29533127 29533288 -5374282 - L1PB4 LINE L1 0 6156 5996 14412 138 36 10 chr21 29533288 29534416 -5373154 - Tigger1 DNA MER2_type -1192 1226 1 561 285 85 45 chr21 29534551 29534804 -5372766 - MIR SINE MIR -1 261 5 1886 109 4 0 chr21 29534901 29535167 -5372403 - AluSp SINE Alu 0 313 47 332 325 8 16 chr21 29536807 29536933 -5370637 + L2 LINE L2 3189 3313 0 688 195 0 0 chr21 29537455 29537583 -5369987 - Charlie1 DNA MER1_type 0 2761 2634 1149 171 0 42 chr21 29537583 29537626 -5369944 + AluJb SINE Alu 92 135 -177 474 18 0 0 chr21 29537626 29537681 -5369889 + (TA)n Simple_repeat Simple_repeat 1 55 0 1149 171 0 42 chr21 29537681 29537854 -5369716 + AluJb SINE Alu 135 299 -13 2007 159 121 65 chr21 29537854 29538173 -5369397 - Charlie1 DNA MER1_type -124 2637 2275 2319 121 22 25 chr21 29538173 29538538 -5369032 - THE1B LTR MaLR 0 364 1 2007 159 121 65 chr21 29538538 29538745 -5368825 - Charlie1 DNA MER1_type -486 2275 2081 478 288 86 0 chr21 29538752 29538891 -5368679 - Charlie1 DNA MER1_type -2610 151 1 327 65 0 0 chr21 29539084 29539130 -5368440 + (TG)n Simple_repeat Simple_repeat 1 46 0 654 250 75 48 chr21 29539588 29539840 -5367730 - L1ME3 LINE L1 -3 6159 5901 483 186 52 100 chr21 29540060 29540175 -5367395 - L1ME3 LINE L1 -249 5915 5813 180 0 0 0 chr21 29540175 29540195 -5367375 + (TTG)n Simple_repeat Simple_repeat 2 21 0 483 186 52 100 chr21 29540195 29540289 -5367281 - L1ME3 LINE L1 -351 5813 5716 180 0 0 0 chr21 29540372 29540392 -5367178 + (CAAAAA)n Simple_repeat Simple_repeat 3 22 0 1676 152 25 65 chr21 29540392 29540748 -5366822 + MLT1A2 LTR MaLR 30 371 -3 4858 149 25 17 chr21 29540984 29541824 -5365746 + L1MB2 LINE L1 5323 6169 -2 206 217 42 50 chr21 29543050 29543170 -5364400 + (CCCG)n Simple_repeat Simple_repeat 2 120 0 240 309 96 0 chr21 29544064 29544158 -5363412 + MIR3 SINE MIR 91 193 -15 1512 172 14 25 chr21 29545286 29545570 -5362000 - AluJo SINE Alu -31 281 1 1871 104 75 99 chr21 29546168 29546492 -5361078 + MLT1B LTR MaLR 7 322 -68 1667 174 0 10 chr21 29546492 29546786 -5360784 - AluJo SINE Alu -21 291 1 1871 104 75 99 chr21 29546786 29546846 -5360724 + MLT1B LTR MaLR 322 382 -8 254 185 33 22 chr21 29548264 29548356 -5359214 + CT-rich Low_complexity Low_complexity 2 94 0 286 371 24 8 chr21 29548782 29548906 -5358664 - L2 LINE L2 -5 3308 3183 245 232 45 90 chr21 29550106 29550229 -5357341 - L2 LINE L2 -243 3070 2954 1505 174 158 6 chr21 29550229 29550546 -5357024 - MLT1A1 LTR MaLR 0 365 1 245 232 45 90 chr21 29550546 29550577 -5356993 - L2 LINE L2 -359 2954 2923 367 293 32 0 chr21 29550631 29550754 -5356816 + Charlie8 DNA MER1_type 102 228 -2189 2064 120 13 0 chr21 29551194 29551502 -5356068 + AluSx SINE Alu 1 312 0 658 235 7 0 chr21 29553880 29554033 -5353537 - L1 LINE L1 -3190 2956 2803 799 111 0 0 chr21 29554909 29555017 -5352553 - AluSq/x SINE Alu -205 108 1 815 149 15 0 chr21 29555408 29555542 -5352028 - L1MA8 LINE L1 -53 6940 6805 2541 190 27 77 chr21 29555542 29555932 -5351638 + Tigger7 DNA MER2_type 1 409 -2178 2169 122 0 0 chr21 29555932 29556244 -5351326 - AluSx SINE Alu 0 312 1 2541 190 27 77 chr21 29556244 29556533 -5351037 + Tigger7 DNA MER2_type 409 711 -1876 1327 167 26 4 chr21 29556533 29556761 -5350809 + MER46A DNA MER2_type 1 233 -3 2541 190 27 77 chr21 29556761 29556852 -5350718 + Tigger7 DNA MER2_type 711 2587 0 4614 156 14 21 chr21 29556852 29558079 -5349491 - L1MA8 LINE L1 -187 6806 5586 892 144 115 99 chr21 29558095 29558338 -5349232 - L1MA8 LINE L1 -2111 4737 4491 2384 136 69 27 chr21 29558345 29558749 -5348821 + MSTA LTR MaLR 8 428 0 1894 148 12 18 chr21 29558750 29559089 -5348481 - L1MA8 LINE L1 -2354 4494 4158 2739 229 26 22 chr21 29559091 29559631 -5347939 - L1MA8 LINE L1 -2771 4077 3541 3008 125 7 0 chr21 29559631 29560056 -5347514 + MSTA LTR MaLR 1 428 0 10131 144 27 6 chr21 29560056 29561672 -5345898 + MSTA-int LTR MaLR 1 1651 0 2673 127 36 12 chr21 29561672 29562090 -5345480 + MSTA LTR MaLR 1 428 0 2739 229 26 22 chr21 29562090 29562312 -5345258 - L1MA8 LINE L1 -3306 3542 3310 1505 209 13 67 chr21 29562322 29562614 -5344956 + MLT1A1 LTR MaLR 13 282 -83 2082 128 0 0 chr21 29562614 29562910 -5344660 + AluSx SINE Alu 1 296 -16 1505 209 13 67 chr21 29562910 29562990 -5344580 + MLT1A1 LTR MaLR 282 365 0 1349 235 23 8 chr21 29563008 29563486 -5344084 - L1MA8 LINE L1 -3555 3293 2759 348 158 63 21 chr21 29564034 29564327 -5343243 + (TG)n Simple_repeat Simple_repeat 1 305 0 720 300 45 14 chr21 29565463 29565683 -5341887 - L1M4 LINE L1 -2527 3619 3393 455 279 127 0 chr21 29565683 29565880 -5341690 - L1MC4 LINE L1 -1123 6919 6698 1429 184 20 79 chr21 29566144 29566497 -5341073 - MLT2B3 LTR ERVL 0 554 223 608 182 131 13 chr21 29566489 29566522 -5341048 - MSTC LTR MaLR -175 221 193 2512 86 0 0 chr21 29566522 29566826 -5340744 - AluSc SINE Alu -5 304 1 608 182 131 13 chr21 29566826 29566986 -5340584 - MSTC LTR MaLR -203 193 1 298 261 14 0 chr21 29567286 29567424 -5340146 + (TA)n Simple_repeat Simple_repeat 1 140 0 1049 227 19 4 chr21 29567450 29567710 -5339860 - L1MC4 LINE L1 -1875 5933 5670 365 237 30 96 chr21 29567710 29567845 -5339725 - L1ME3A LINE L1 -67 6103 5978 627 220 26 0 chr21 29567943 29568158 -5339412 - L1ME3A LINE L1 -219 5951 5703 745 290 93 37 chr21 29568413 29569211 -5338359 - L1MEd LINE L1 -4702 1608 741 1849 182 0 7 chr21 29570213 29570515 -5337055 + AluJb SINE Alu 4 303 -9 23 0 0 0 chr21 29572389 29572412 -5335158 + AT_rich Low_complexity Low_complexity 1 23 0 2398 92 10 0 chr21 29573849 29574155 -5333415 + AluSc SINE Alu 1 309 0 316 289 10 0 chr21 29574246 29574350 -5333220 + MER103 DNA DNA 48 152 -14 293 176 0 20 chr21 29576517 29576568 -5331002 + MIR SINE MIR 81 130 -78 258 286 13 26 chr21 29578160 29578237 -5329333 - MIR3 SINE MIR -13 195 120 300 200 0 0 chr21 29578793 29578858 -5328712 + GA-rich Low_complexity Low_complexity 3 67 0 2198 92 7 3 chr21 29578891 29579206 -5328364 + AluSq SINE Alu 1 316 0 4243 178 39 28 chr21 29579206 29580694 -5326876 + L1PA12 LINE L1 4185 5678 -490 3475 105 10 6 chr21 29580716 29581232 -5326338 + L1PA12 LINE L1 5651 6168 0 4632 146 43 15 chr21 29581211 29581936 -5325634 + L1MB8 LINE L1 5141 5905 -273 225 0 0 0 chr21 29581936 29581961 -5325609 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4632 146 43 15 chr21 29581961 29582243 -5325327 + L1MB8 LINE L1 5905 6178 0 420 20 0 0 chr21 29582416 29582465 -5325105 + (CA)n Simple_repeat Simple_repeat 2 50 0 805 207 10 20 chr21 29582502 29582617 -5324953 - MER3 DNA MER1_type 0 209 95 1831 153 85 9 chr21 29582617 29582957 -5324613 - MER47A DNA MER2_type 0 366 1 805 207 10 20 chr21 29582957 29583039 -5324531 - MER3 DNA MER1_type -114 95 14 1019 198 43 0 chr21 29583080 29583333 -5324237 + L1MA4 LINE L1 6033 6296 -4 272 257 12 44 chr21 29584367 29584473 -5323097 + MIR3 SINE MIR 59 162 -46 248 185 92 0 chr21 29584552 29584617 -5322953 - MLT1I LTR MaLR -31 378 308 843 173 89 16 chr21 29585081 29585272 -5322298 + MLT1C LTR MaLR 4 208 -259 371 259 18 9 chr21 29585386 29585498 -5322072 + MLT1C LTR MaLR 258 370 -4 2019 154 0 10 chr21 29586076 29586381 -5321189 + AluSx SINE Alu 3 304 -8 285 252 30 50 chr21 29587579 29587678 -5319892 - MIR3 SINE MIR -22 186 90 451 223 40 27 chr21 29588108 29588256 -5319314 + MER5A DNA MER1_type 39 188 -1 2087 154 0 0 chr21 29589126 29589438 -5318132 - AluJo SINE Alu 0 312 1 981 181 0 18 chr21 29589619 29589790 -5317780 - FRAM SINE Alu -8 168 1 234 250 259 35 chr21 29589806 29589922 -5317648 + L2 LINE L2 3171 3312 -1 1027 108 24 84 chr21 29590948 29590972 -5316598 + MLT1C LTR MaLR 1 25 -442 3238 79 7 31 chr21 29590972 29591427 -5316143 - MLT2A1 LTR ERVL 0 444 1 1027 108 24 84 chr21 29591427 29591583 -5315987 + MLT1C LTR MaLR 25 189 -278 279 0 0 0 chr21 29591583 29591614 -5315956 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 4151 128 10 0 chr21 29591614 29592241 -5315329 - L1PA15 LINE L1 -13 6152 5520 1027 108 24 84 chr21 29592241 29592271 -5315299 + MLT1C LTR MaLR 187 200 -267 477 285 0 0 chr21 29592394 29592524 -5315046 - MER119 DNA MER1_type 0 583 454 307 234 180 27 chr21 29592524 29592635 -5314935 - MER119 DNA MER1_type -449 134 7 360 174 14 0 chr21 29592707 29592776 -5314794 - MSTB1 LTR MaLR 0 432 363 1413 96 5 5 chr21 29592776 29592963 -5314607 + AluSp SINE Alu 1 187 -126 231 36 0 0 chr21 29596210 29596238 -5311332 + (CCCCCG)n Simple_repeat Simple_repeat 3 30 0 473 240 58 39 chr21 29599315 29599469 -5308101 - L2 LINE L2 -20 3293 3137 293 196 0 0 chr21 29599549 29599600 -5307970 + L2 LINE L2 3221 3271 -1 191 295 66 0 chr21 29599715 29599776 -5307794 + MIR SINE MIR 56 120 -142 321 304 47 0 chr21 29599906 29600054 -5307516 + L2 LINE L2 2420 2574 -740 189 0 0 0 chr21 29600185 29600206 -5307364 + (A)n Simple_repeat Simple_repeat 1 21 0 220 205 0 0 chr21 29600555 29600594 -5306976 - MIR SINE MIR -62 146 108 427 322 108 37 chr21 29601332 29601711 -5305859 + L2 LINE L2 2830 3235 -37 1512 196 58 56 chr21 29601726 29602174 -5305396 - MLT1C LTR MaLR 0 467 19 1736 149 0 48 chr21 29602631 29602950 -5304620 + AluJb SINE Alu 1 305 0 24 0 0 0 chr21 29605031 29605055 -5302515 + AT_rich Low_complexity Low_complexity 1 24 0 2600 68 0 0 chr21 29607783 29608090 -5299480 + AluY SINE Alu 1 307 -4 410 208 13 0 chr21 29608136 29608213 -5299357 + L1ME LINE L1 5520 5597 -565 1097 201 127 0 chr21 29608213 29608481 -5299089 - MLT1F1 LTR MaLR -265 302 1 1902 171 0 3 chr21 29609456 29609760 -5297810 + AluJb SINE Alu 1 303 -9 1848 107 55 76 chr21 29610294 29610677 -5296893 + THE1C LTR MaLR 1 375 0 952 104 75 0 chr21 29611110 29611244 -5296326 + AluSg/x SINE Alu 162 305 -4 2755 158 82 37 chr21 29611450 29611667 -5295903 - Tigger1 DNA MER2_type -1764 654 448 2607 93 14 3 chr21 29611667 29612023 -5295547 + THE1B LTR MaLR 5 364 0 2755 158 82 37 chr21 29612023 29612379 -5295191 - Tigger1 DNA MER2_type -1970 448 55 1119 83 35 3 chr21 29612399 29612629 -5294941 + AluSx SINE Alu 2 310 0 302 125 0 0 chr21 29612632 29612680 -5294890 - Tigger1 DNA MER2_type -2370 48 1 1541 76 0 5 chr21 29613218 29613415 -5294155 + MER107 DNA MER1_type 1 196 -1 1836 266 79 32 chr21 29613849 29614623 -5292947 + L2 LINE L2 1975 2784 -530 340 225 34 11 chr21 29615164 29615253 -5292317 + MER20 DNA MER1_type 1 91 -128 1783 173 0 21 chr21 29615612 29615901 -5291669 + AluJo SINE Alu 1 283 -29 393 22 0 0 chr21 29615906 29615952 -5291618 + (CATA)n Simple_repeat Simple_repeat 3 48 0 2481 70 0 3 chr21 29617103 29617402 -5290168 + AluY SINE Alu 1 298 -13 2078 134 17 0 chr21 29617769 29618061 -5289509 - AluSx SINE Alu -15 297 1 183 80 0 0 chr21 29618158 29618183 -5289387 + (T)n Simple_repeat Simple_repeat 1 25 0 2281 87 26 0 chr21 29618204 29618514 -5289056 - L1PA12 LINE L1 -2 6166 5849 2489 180 32 2 chr21 29618592 29619064 -5288506 + L1MB3 LINE L1 5691 6176 -7 2360 94 10 3 chr21 29619202 29619511 -5288059 + AluSx SINE Alu 1 311 -1 1447 295 93 45 chr21 29619742 29620897 -5286673 + L2 LINE L2 1872 3128 -144 2202 90 39 0 chr21 29621040 29621319 -5286251 + AluSg SINE Alu 1 290 -20 447 92 0 0 chr21 29621336 29621401 -5286169 + (GGAA)n Simple_repeat Simple_repeat 4 68 0 218 261 0 0 chr21 29621698 29621744 -5285826 + L2 LINE L2 3263 3308 -5 361 197 14 0 chr21 29623598 29623669 -5283901 + MIR SINE MIR 169 240 -22 205 238 162 0 chr21 29623706 29623786 -5283784 + MIR SINE MIR 92 184 -78 2287 110 3 0 chr21 29624410 29624702 -5282868 + AluSp SINE Alu 2 294 -19 296 246 16 0 chr21 29625042 29625103 -5282467 - MER5A DNA MER1_type 0 189 128 348 192 110 0 chr21 29625114 29625187 -5282383 + AluY SINE Alu 11 91 -217 2008 156 0 7 chr21 29625948 29626249 -5281321 - AluJb SINE Alu -13 299 1 1552 166 58 58 chr21 29626891 29627085 -5280485 - THE1C LTR MaLR -7 368 172 2259 119 0 0 chr21 29627085 29627388 -5280182 - AluSq SINE Alu -10 303 1 1552 166 58 58 chr21 29627388 29627554 -5280016 - THE1C LTR MaLR -202 173 8 257 122 0 0 chr21 29627554 29627595 -5279975 - MSTA LTR MaLR -380 48 8 303 125 0 0 chr21 29627595 29627643 -5279927 - MSTA LTR MaLR -380 48 1 339 179 30 0 chr21 29627809 29627876 -5279694 - AluJo SINE Alu -2 300 232 1107 171 0 11 chr21 29627876 29628052 -5279518 - AluJo SINE Alu -133 179 6 2611 129 16 25 chr21 29628907 29629386 -5278184 - MER1A DNA MER1_type 0 529 1 929 204 138 120 chr21 29630784 29631241 -5276329 - MER4C LTR ERV1 0 465 1 297 135 0 0 chr21 29631257 29631309 -5276261 + (A)n Simple_repeat Simple_repeat 1 52 0 818 104 0 6 chr21 29631410 29631670 -5275900 + AluSx SINE Alu 1 308 -2 1301 212 72 29 chr21 29631690 29632039 -5275531 - MLT1A1 LTR MaLR -1 364 1 2346 112 3 3 chr21 29632076 29632388 -5275182 - AluSx SINE Alu 0 312 1 2180 106 14 0 chr21 29632388 29632672 -5274898 - AluSq SINE Alu -25 288 1 184 375 0 0 chr21 29634978 29635050 -5272520 + L2 LINE L2 3201 3272 0 1566 170 10 35 chr21 29635327 29635616 -5271954 + AluJo SINE Alu 1 282 -30 240 35 0 0 chr21 29635621 29635650 -5271920 + (CA)n Simple_repeat Simple_repeat 2 30 0 1527 200 100 17 chr21 29636001 29636361 -5271209 - MLT1B LTR MaLR 0 390 1 435 161 50 3 chr21 29636541 29636639 -5270931 - MLT1H1 LTR MaLR 0 620 464 17156 183 19 8 chr21 29636837 29640920 -5266650 + L1P5 LINE L1 1 4202 -2660 8275 170 10 8 chr21 29640942 29643071 -5264499 + L1P5 LINE L1 4305 6431 -436 382 261 0 22 chr21 29643110 29643202 -5264368 + L1MC4 LINE L1 6614 6703 -1339 344 205 23 79 chr21 29643182 29643320 -5264250 + L1MC4 LINE L1 1980 2124 -6198 2461 107 31 8 chr21 29643320 29643356 -5264214 + L1PB1 LINE L1 5760 5794 -357 273 29 0 0 chr21 29643356 29643390 -5264180 + (CTA)n Simple_repeat Simple_repeat 2 35 0 2461 107 31 8 chr21 29643390 29643735 -5263835 + L1PB1 LINE L1 5794 6150 -1 344 205 23 79 chr21 29643735 29643749 -5263821 + L1MC4 LINE L1 2124 6983 -1339 2575 119 14 34 chr21 29643753 29643968 -5263602 - LTR56 LTR ERV1 0 445 227 2348 120 19 30 chr21 29643968 29644334 -5263236 - THE1B LTR MaLR -2 362 1 2575 119 14 34 chr21 29644334 29644564 -5263006 - LTR56 LTR ERV1 -218 227 9 921 169 0 0 chr21 29645117 29645265 -5262305 - FRAM SINE Alu -1 175 28 247 288 0 15 chr21 29645616 29645682 -5261888 + GA-rich Low_complexity Low_complexity 2 66 0 324 0 0 0 chr21 29645682 29645718 -5261852 + (CATGT)n Simple_repeat Simple_repeat 2 37 0 778 186 25 55 chr21 29645724 29645889 -5261681 - LTR49 LTR ERV1 -402 193 33 2400 96 0 3 chr21 29645889 29646192 -5261378 + AluSx SINE Alu 1 302 -10 778 186 25 55 chr21 29646192 29646225 -5261345 - LTR49 LTR ERV1 -562 33 1 448 202 30 10 chr21 29646477 29646576 -5260994 - MER5A DNA MER1_type -86 103 3 225 163 0 0 chr21 29646660 29646709 -5260861 + G-rich Low_complexity Low_complexity 4 52 0 8727 47 1 0 chr21 29647265 29648233 -5259337 - LTR5 LTR ERVK 0 969 1 311 167 69 39 chr21 29648269 29648371 -5259199 + MER4A LTR ERV1 1 105 -559 2980 75 16 14 chr21 29648421 29648846 -5258724 + MER41A LTR ERV1 18 443 -111 3948 95 37 25 chr21 29649341 29650054 -5257516 - LTR17 LTR ERV1 0 780 1 242 167 19 19 chr21 29650212 29650266 -5257304 - MER96 DNA MER1_type? -7 168 115 324 0 0 0 chr21 29650624 29650660 -5256910 + (TG)n Simple_repeat Simple_repeat 2 37 0 1942 128 87 68 chr21 29651531 29651970 -5255600 - LTR7 LTR ERV1 -2 448 2 185 0 40 0 chr21 29652020 29652045 -5255525 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 330 230 23 0 chr21 29652424 29652511 -5255059 - MER5A DNA MER1_type -79 110 22 22 35 0 0 chr21 29652579 29652608 -5254962 + GC_rich Low_complexity Low_complexity 1 29 0 564 86 0 0 chr21 29653855 29653936 -5253634 + L1PA8 LINE L1 6092 6172 0 2205 148 0 0 chr21 29654295 29654605 -5252965 - AluSx SINE Alu -2 310 1 405 306 61 15 chr21 29656039 29656073 -5251497 + Charlie2b DNA MER1_type 184 215 -2567 1898 100 8 12 chr21 29656073 29656332 -5251238 + AluSc SINE Alu 49 306 -3 405 306 61 15 chr21 29656332 29656493 -5251077 + Charlie2b DNA MER1_type 215 388 -2394 1080 305 52 39 chr21 29656557 29657118 -5250452 + Charlie2b DNA MER1_type 472 1039 -1743 529 242 85 83 chr21 29657103 29657422 -5250148 + Charlie2b DNA MER1_type 2291 2613 -249 2207 128 0 10 chr21 29657422 29657728 -5249842 - AluSx SINE Alu -9 303 1 529 242 85 83 chr21 29657728 29657867 -5249703 + Charlie2b DNA MER1_type 2613 2750 -32 2075 128 3 7 chr21 29657879 29658176 -5249394 - AluSg1 SINE Alu -13 296 1 392 318 8 0 chr21 29658260 29658386 -5249184 - L2 LINE L2 -2 3311 3185 348 245 91 42 chr21 29659012 29659155 -5248415 + MIR SINE MIR 25 174 -88 797 202 16 37 chr21 29659541 29659729 -5247841 + MER5A DNA MER1_type 3 186 -3 592 315 34 4 chr21 29659766 29660004 -5247566 + L1ME3A LINE L1 5700 5944 -226 612 244 116 0 chr21 29660329 29660501 -5247069 + MER20 DNA MER1_type 7 198 -21 464 221 0 36 chr21 29660703 29660843 -5246727 - L1M4 LINE L1 -1355 4791 4657 2817 257 81 16 chr21 29660810 29661818 -5245752 - L1MEc LINE L1 -4108 2288 1215 1945 123 70 22 chr21 29661831 29662189 -5245381 - THE1C LTR MaLR 0 375 1 1755 176 73 22 chr21 29662448 29662818 -5244752 - MLT1B LTR MaLR 0 390 2 1798 170 3 7 chr21 29663759 29664047 -5243523 + AluJb SINE Alu 1 287 -25 555 254 96 53 chr21 29664807 29665110 -5242460 - MLT1H LTR MaLR -194 355 40 445 239 97 22 chr21 29665311 29665445 -5242125 - MLT1J LTR MaLR -233 278 135 1526 157 91 21 chr21 29666619 29666905 -5240665 + AluJb SINE Alu 1 306 -6 414 57 0 0 chr21 29668438 29668491 -5239079 + (TG)n Simple_repeat Simple_repeat 1 53 0 431 319 64 61 chr21 29668603 29668916 -5238654 + L1M4 LINE L1 4745 5058 -1088 2268 160 35 2 chr21 29669116 29669573 -5237997 + L1MB3 LINE L1 5712 6183 0 436 255 0 0 chr21 29670425 29670519 -5237051 - MER5A DNA MER1_type -80 109 16 1880 91 0 0 chr21 29670734 29670985 -5236585 - AluSg/x SINE Alu 0 330 80 905 264 4 25 chr21 29672586 29672825 -5234745 - MLT1A1 LTR MaLR 0 365 132 1005 162 71 0 chr21 29672825 29673022 -5234548 - Tigger1 DNA MER2_type 0 2418 2208 565 199 64 58 chr21 29672994 29673150 -5234420 - Tigger1 DNA MER2_type -2236 182 26 646 200 15 0 chr21 29673161 29673291 -5234279 - MLT1A1 LTR MaLR -233 132 1 2044 156 34 21 chr21 29673479 29673858 -5233712 - MLT1B LTR MaLR -6 384 1 1266 226 63 41 chr21 29673866 29674173 -5233397 + L1MB7 LINE L1 5795 6113 -71 2008 108 44 20 chr21 29674173 29674469 -5233101 - AluSx SINE Alu -9 303 1 1266 226 63 41 chr21 29674469 29674524 -5233046 + L1MB7 LINE L1 6113 6165 -19 2550 66 0 3 chr21 29674964 29675267 -5232303 + AluY SINE Alu 1 302 -9 423 0 0 0 chr21 29675371 29675418 -5232152 + (TG)n Simple_repeat Simple_repeat 2 48 0 847 279 94 61 chr21 29675825 29676285 -5231285 - MER21A LTR ERV1 -81 810 376 886 232 94 13 chr21 29676303 29676536 -5231034 - MER21B LTR ERV1 -611 252 1 860 202 111 29 chr21 29676997 29677383 -5230187 + Charlie2 DNA MER1_type 2355 2772 -90 1953 154 0 3 chr21 29678010 29678302 -5229268 + AluSx SINE Alu 21 311 -1 2025 125 35 46 chr21 29679438 29679805 -5227765 - THE1B LTR MaLR 0 364 2 327 194 45 0 chr21 29679870 29679937 -5227633 + MIR SINE MIR 74 143 -119 2919 187 22 69 chr21 29679997 29680760 -5226810 - MER4D LTR ERV1 0 903 62 664 187 58 11 chr21 29680749 29680988 -5226582 - MER49 LTR ERV1 -629 294 1 237 252 56 65 chr21 29681304 29681344 -5226226 - MER5A DNA MER1_type -80 109 70 2260 118 0 10 chr21 29681344 29681649 -5225921 - AluSx SINE Alu -10 302 1 237 252 56 65 chr21 29681649 29681715 -5225855 - MER5A DNA MER1_type -119 70 4 465 286 132 9 chr21 29682118 29682338 -5225232 - L1MC4a LINE L1 -1942 5866 5620 1680 204 13 29 chr21 29682342 29682399 -5225171 - MLT2C1 LTR ERVL -8 406 350 2136 142 0 16 chr21 29682399 29682741 -5224829 + AluSx SINE Alu 1 312 0 1680 204 13 29 chr21 29682741 29683093 -5224477 - MLT2C1 LTR ERVL -64 350 1 2294 117 0 0 chr21 29683191 29683499 -5224071 - AluSg SINE Alu -2 308 1 257 277 27 18 chr21 29683499 29683602 -5223968 - L1MC4a LINE L1 -702 5464 5375 1374 202 118 0 chr21 29684117 29684439 -5223131 - L1MB3 LINE L1 0 6183 5824 1259 137 83 5 chr21 29684446 29684650 -5222920 - AluSg/x SINE Alu -15 295 76 2316 102 3 0 chr21 29685955 29686249 -5221321 + AluSx SINE Alu 1 295 -17 229 271 64 57 chr21 29686639 29686779 -5220791 + L3 LINE CR1 1346 1486 -91 2413 104 30 0 chr21 29687784 29688150 -5219420 + MER51B LTR ERV1 1 377 0 1015 138 12 6 chr21 29688386 29688546 -5219024 + THE1B LTR MaLR 204 364 0 11453 90 4 8 chr21 29688546 29688711 -5218859 + THE1B-int LTR MaLR 1 165 -1415 1950 151 3 16 chr21 29688711 29689015 -5218555 - AluSx SINE Alu -12 300 1 11453 90 4 8 chr21 29689015 29690435 -5217135 + THE1B-int LTR MaLR 165 1580 0 2237 111 25 25 chr21 29690435 29690797 -5216773 + THE1B LTR MaLR 1 362 -2 194 222 127 16 chr21 29690900 29690963 -5216607 + MER5A DNA MER1_type 18 87 -102 2406 97 0 0 chr21 29693547 29693846 -5213724 + AluSx SINE Alu 1 299 -13 225 308 78 60 chr21 29695447 29695781 -5211789 + L2 LINE L2 2265 2604 -710 268 342 83 0 chr21 29695853 29695973 -5211597 + L2 LINE L2 2711 2840 -474 413 277 89 68 chr21 29696028 29696320 -5211250 + L2 LINE L2 3006 3303 -10 380 333 16 8 chr21 29696921 29697050 -5210520 - MIR SINE MIR -61 147 18 820 230 73 0 chr21 29697801 29698005 -5209565 + MER20 DNA MER1_type 1 219 0 212 241 37 0 chr21 29698764 29698818 -5208752 + L2 LINE L2 3253 3308 -5 267 284 73 9 chr21 29699614 29699723 -5207847 - MIR SINE MIR -63 199 84 353 250 6 0 chr21 29700349 29700505 -5207065 + (TGAG)n Simple_repeat Simple_repeat 4 160 0 540 244 10 0 chr21 29700517 29700922 -5206648 + (TGAG)n Simple_repeat Simple_repeat 1 409 0 623 218 6 0 chr21 29700954 29701606 -5205964 + (TGAG)n Simple_repeat Simple_repeat 1 656 0 335 229 18 6 chr21 29701620 29701786 -5205784 + (TGAG)n Simple_repeat Simple_repeat 4 171 0 401 244 6 0 chr21 29701841 29702017 -5205553 + (TGAG)n Simple_repeat Simple_repeat 4 180 0 339 249 18 0 chr21 29702040 29702209 -5205361 + (TGAG)n Simple_repeat Simple_repeat 1 172 0 328 215 32 0 chr21 29702246 29702404 -5205166 + (TGAG)n Simple_repeat Simple_repeat 2 164 0 267 0 0 0 chr21 29703480 29703512 -5204058 + MIR SINE MIR 83 114 -148 1627 231 27 24 chr21 29703805 29704332 -5203238 + MER90 LTR ERV1 1 575 0 2266 117 3 0 chr21 29707274 29707581 -5199989 - AluSx SINE Alu -4 308 1 906 240 35 22 chr21 29707730 29708004 -5199566 + L1MB7 LINE L1 5647 5934 -250 950 187 63 49 chr21 29708018 29708302 -5199268 + L1MB7 LINE L1 5897 6184 0 275 107 187 0 chr21 29708338 29708413 -5199157 + L1MB7 LINE L1 6096 6184 0 2056 125 7 0 chr21 29708424 29708725 -5198845 + AluSx SINE Alu 1 303 0 2146 198 65 42 chr21 29709347 29709918 -5197652 + L1MC2 LINE L1 5760 6343 -1 2008 83 60 46 chr21 29709937 29710239 -5197331 - AluSp SINE Alu -7 306 1 25 0 0 0 chr21 29710410 29710435 -5197135 + AT_rich Low_complexity Low_complexity 1 25 0 531 224 0 67 chr21 29710442 29710492 -5197078 - L1MA9 LINE L1 0 6312 6260 1560 148 72 32 chr21 29710492 29710770 -5196800 + AluJb SINE Alu 1 289 -23 531 224 0 67 chr21 29710770 29710884 -5196686 - L1MA9 LINE L1 -52 6260 6159 330 26 0 0 chr21 29711723 29711762 -5195808 + (TG)n Simple_repeat Simple_repeat 2 40 0 2074 157 0 3 chr21 29712010 29712323 -5195247 + AluJb SINE Alu 1 312 0 2497 64 0 0 chr21 29712947 29713242 -5194328 - AluSg SINE Alu -15 295 1 4392 187 17 11 chr21 29713454 29714322 -5193248 + L1MA8 LINE L1 5417 6289 -2 2146 116 25 0 chr21 29714450 29714735 -5192835 - AluSx SINE Alu -20 292 1 2108 126 0 11 chr21 29715276 29715583 -5191987 - AluSx SINE Alu 0 304 1 2316 98 7 3 chr21 29716509 29716804 -5190766 + AluSx SINE Alu 2 297 -15 462 214 185 51 chr21 29716999 29717177 -5190393 - MER3 DNA MER1_type -5 204 3 404 251 117 86 chr21 29717693 29717794 -5189776 - MER5A DNA MER1_type -7 182 73 2055 129 37 0 chr21 29717794 29718089 -5189481 - AluJb SINE Alu -6 306 1 404 251 117 86 chr21 29718089 29718150 -5189420 - MER5A DNA MER1_type -116 73 15 2040 101 8 8 chr21 29718582 29718870 -5188700 + AluSx SINE Alu 28 312 0 840 206 57 10 chr21 29719601 29719810 -5187760 - MER20 DNA MER1_type 0 219 1 2335 111 0 0 chr21 29721432 29721739 -5185831 + AluSc SINE Alu 1 307 -2 2209 117 0 7 chr21 29721983 29722283 -5185287 + AluSq SINE Alu 1 298 -15 23 0 0 0 chr21 29722547 29722570 -5185000 + AT_rich Low_complexity Low_complexity 1 23 0 2466 87 3 0 chr21 29723470 29723780 -5183790 - AluSp SINE Alu -2 311 1 2848 132 21 19 chr21 29725978 29726461 -5181109 + MER31A LTR ERV1 2 485 0 705 268 103 0 chr21 29726723 29726936 -5180634 + MIR SINE MIR 13 247 -15 2419 107 0 0 chr21 29727967 29728277 -5179293 + AluSx SINE Alu 1 310 -2 353 198 158 0 chr21 29730010 29730111 -5177459 + MIR SINE MIR 131 247 -15 576 378 22 26 chr21 29730136 29730448 -5177122 + L3 LINE CR1 1247 1557 -20 223 252 53 68 chr21 29731841 29731987 -5175583 - MER5B DNA MER1_type -27 162 23 366 250 21 35 chr21 29732511 29732700 -5174870 + MIR SINE MIR 23 262 0 209 212 25 50 chr21 29734733 29734813 -5172757 + C-rich Low_complexity Low_complexity 6 83 0 26 0 0 0 chr21 29734879 29734905 -5172665 + GC_rich Low_complexity Low_complexity 1 26 0 252 250 0 0 chr21 29735532 29735592 -5171978 + MER34 LTR ERV1 1 60 -482 1853 149 17 7 chr21 29735899 29736201 -5171369 - AluJo SINE Alu -1 311 7 327 243 81 92 chr21 29736207 29736380 -5171190 + MER34 LTR ERV1 380 542 0 297 127 0 0 chr21 29736845 29736900 -5170670 - MLT2B1 LTR ERVL -2 518 464 188 222 43 8 chr21 29736903 29737020 -5170550 + (CATATA)n Simple_repeat Simple_repeat 6 126 0 1990 186 73 20 chr21 29737084 29737535 -5170035 - MLT2B1 LTR ERVL -41 479 5 1645 194 4 11 chr21 29737535 29737814 -5169756 + AluJo SINE Alu 1 277 -35 27903 157 25 9 chr21 29737842 29739491 -5168079 - ERVL-B1 LTR ERVL 0 5764 4142 1757 122 4 4 chr21 29739491 29739738 -5167832 - AluSx SINE Alu -12 300 54 27903 157 25 9 chr21 29739738 29739769 -5167801 - ERVL-B1 LTR ERVL -1622 4142 4113 2327 112 0 0 chr21 29739769 29740064 -5167506 + AluSg SINE Alu 1 295 -15 27903 157 25 9 chr21 29740064 29743228 -5164342 - ERVL-B1 LTR ERVL -1651 4113 845 478 298 23 47 chr21 29743300 29743659 -5163911 + L1MCa LINE L1 1280 1672 -4864 1089 161 6 0 chr21 29743665 29743839 -5163731 + AluSq SINE Alu 137 311 -2 399 239 63 56 chr21 29743857 29743934 -5163636 + L1MCa LINE L1 1560 1635 -1152 2037 125 3 3 chr21 29743934 29744230 -5163340 - AluSg SINE Alu -14 296 1 399 239 63 56 chr21 29744230 29744293 -5163277 + L1MCa LINE L1 1635 1926 -861 345 220 77 22 chr21 29744626 29744717 -5162853 - L1MC4 LINE L1 -1339 6703 6608 638 231 127 18 chr21 29744790 29745011 -5162559 + MLT2F LTR ERVL 254 498 -165 342 45 0 0 chr21 29745104 29745148 -5162422 + (CA)n Simple_repeat Simple_repeat 2 45 0 1878 122 29 44 chr21 29745186 29745530 -5162040 + L1MB3 LINE L1 5838 6176 -7 388 312 60 11 chr21 29745535 29745801 -5161769 + L1ME LINE L1 5436 5714 -456 2202 121 0 7 chr21 29746229 29746527 -5161043 + AluSq SINE Alu 1 296 -17 1663 157 126 14 chr21 29746875 29747231 -5160339 - MSTD LTR MaLR 0 396 1 2258 148 89 7 chr21 29748722 29749160 -5158410 - MER31A LTR ERV1 -7 478 5 4271 71 6 0 chr21 29749169 29749715 -5157855 - L1PA10 LINE L1 -4 6164 5616 2608 49 16 0 chr21 29750750 29751056 -5156514 - AluY SINE Alu 0 311 1 2516 63 0 3 chr21 29751159 29751462 -5156108 + AluY SINE Alu 1 302 -9 225 240 0 0 chr21 29752070 29752120 -5155450 + L1MC4 LINE L1 6653 6702 -1340 302 167 0 15 chr21 29752129 29752195 -5155375 + (TA)n Simple_repeat Simple_repeat 2 66 0 2151 120 10 3 chr21 29752291 29752590 -5154980 + AluSx SINE Alu 1 301 -11 541 320 17 6 chr21 29754030 29754211 -5153359 + MER91B DNA MER1_type 2 184 -6 2477 100 0 0 chr21 29754841 29755152 -5152418 + AluSx SINE Alu 2 312 0 1091 69 23 0 chr21 29755615 29755746 -5151824 - AluSq/x SINE Alu -179 134 1 598 307 80 0 chr21 29755857 29756069 -5151501 - L2 LINE L2 -800 2514 2286 22 35 0 0 chr21 29756997 29757026 -5150544 + AT_rich Low_complexity Low_complexity 1 29 0 339 85 0 0 chr21 29757461 29757508 -5150062 + (TG)n Simple_repeat Simple_repeat 2 48 0 4803 123 25 47 chr21 29757984 29758265 -5149305 - MER4E LTR ERV1 0 779 494 2407 87 3 0 chr21 29758265 29758563 -5149007 - AluSp SINE Alu -14 299 1 4803 123 25 47 chr21 29758563 29759077 -5148493 - MER4E LTR ERV1 -285 494 1 207 0 0 0 chr21 29759637 29759660 -5147910 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1928 156 3 0 chr21 29759700 29760016 -5147554 - AluSx SINE Alu 0 317 1 25 0 0 0 chr21 29760038 29760063 -5147507 + AT_rich Low_complexity Low_complexity 1 25 0 301 386 24 0 chr21 29760799 29760926 -5146644 + MIR SINE MIR 15 144 -118 2084 122 3 38 chr21 29761274 29761593 -5145977 - AluJo SINE Alu -4 308 1 2019 122 22 0 chr21 29761617 29761915 -5145655 + AluSx SINE Alu 1 304 0 23 0 0 0 chr21 29763863 29763886 -5143684 + AT_rich Low_complexity Low_complexity 1 23 0 230 299 39 16 chr21 29763886 29764013 -5143557 - MER69 DNA AcHobo -235 2291 2162 322 291 111 37 chr21 29764012 29764283 -5143287 - MER69 DNA AcHobo -679 547 257 576 293 66 46 chr21 29764858 29765162 -5142408 - L2 LINE L2 -927 2387 2078 1826 167 33 0 chr21 29765167 29765527 -5142043 + MLT1B LTR MaLR 6 377 -13 187 329 57 29 chr21 29765826 29765896 -5141674 + L3 LINE CR1 423 494 -1083 1256 101 6 0 chr21 29766597 29766765 -5140805 + AluSc SINE Alu 132 300 -9 1117 75 0 0 chr21 29766847 29766980 -5140590 - AluSc SINE Alu -176 133 1 846 188 0 0 chr21 29766982 29767115 -5140455 - AluJo/FLAM SINE Alu -179 133 1 611 252 13 0 chr21 29767853 29768004 -5139566 - MER69A DNA AcHobo -17 160 8 439 336 92 53 chr21 29768171 29768547 -5139023 + HAL1 LINE L1 1339 1738 -769 2341 105 3 0 chr21 29768547 29768852 -5138718 + AluSx SINE Alu 1 306 -6 439 336 92 53 chr21 29768852 29768945 -5138625 + HAL1 LINE L1 1738 1826 -681 1051 223 54 35 chr21 29768959 29769434 -5138136 + MLT1D LTR MaLR 2 505 0 2516 90 3 0 chr21 29769665 29769977 -5137593 - AluSq SINE Alu 0 313 1 419 247 82 60 chr21 29770113 29770295 -5137275 + L1MDa LINE L1 2448 2633 -3907 1159 201 57 113 chr21 29770378 29770735 -5136835 + MER39 LTR ERV1 6 524 -183 1603 177 13 39 chr21 29770735 29771046 -5136524 + AluJo SINE Alu 1 303 -9 1159 201 57 113 chr21 29771046 29771219 -5136351 + MER39 LTR ERV1 524 705 -2 657 335 115 60 chr21 29771362 29772031 -5135539 + L1MDa LINE L1 3511 4216 -2324 237 33 0 0 chr21 29772106 29772136 -5135434 + (CAAG)n Simple_repeat Simple_repeat 3 32 0 221 167 0 0 chr21 29772146 29772182 -5135388 + GA-rich Low_complexity Low_complexity 1 36 0 195 42 0 0 chr21 29772182 29772206 -5135364 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 749 102 16 53 chr21 29772206 29772393 -5135177 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 617 146 22 45 chr21 29772430 29772589 -5134981 + GA-rich Low_complexity Low_complexity 5 161 -17 2397 138 15 13 chr21 29772589 29772986 -5134584 + MER57A LTR ERV1 2 399 -4 617 146 22 45 chr21 29772986 29773004 -5134566 + GA-rich Low_complexity Low_complexity 161 178 0 353 288 50 50 chr21 29773234 29773432 -5134138 + L1MDa LINE L1 4857 5054 -1486 326 379 68 0 chr21 29773478 29773655 -5133915 + L1MDa LINE L1 5127 5315 -1225 224 265 88 39 chr21 29774138 29774191 -5133379 - MIR SINE MIR -115 147 98 1802 174 10 3 chr21 29774191 29774485 -5133085 - AluSx SINE Alu -16 296 1 224 265 88 39 chr21 29774485 29774533 -5133037 - MIR SINE MIR -164 98 41 445 250 103 7 chr21 29775230 29775366 -5132204 - MIR SINE MIR -77 185 37 303 286 75 31 chr21 29775372 29775533 -5132037 + Charlie2 DNA MER1_type 2009 2176 -686 360 200 0 0 chr21 29776051 29776171 -5131399 + (TG)n Simple_repeat Simple_repeat 1 120 0 242 237 79 0 chr21 29776426 29776502 -5131068 - MER92B LTR ERV1 -10 626 545 234 178 22 0 chr21 29776657 29776702 -5130868 - MER92B LTR ERV1 -46 590 545 234 178 22 0 chr21 29776725 29776770 -5130800 - MER92B LTR ERV1 -46 590 545 2384 90 0 10 chr21 29777123 29777435 -5130135 - AluY SINE Alu -2 309 1 1641 217 149 4 chr21 29777575 29778046 -5129524 - MER92B LTR ERV1 -97 539 1 828 281 73 0 chr21 29778052 29778394 -5129176 + Charlie2 DNA MER1_type 2496 2862 0 215 185 148 0 chr21 29778610 29778664 -5128906 + MER5B DNA MER1_type 94 155 -23 2947 120 9 0 chr21 29778746 29779172 -5128398 - L1PA15 LINE L1 -2 6163 5734 2393 87 71 8 chr21 29779172 29779538 -5128032 + L1PA15 LINE L1 5338 5726 -439 2244 85 0 26 chr21 29779915 29780220 -5127350 + AluSc SINE Alu 1 297 -12 2995 9 0 0 chr21 29780789 29781107 -5126463 - AluYb8 SINE Alu 0 318 1 608 96 0 0 chr21 29781166 29781249 -5126321 - AluSg/x SINE Alu -15 294 212 2021 134 4 4 chr21 29782756 29783062 -5124508 + AluSx SINE Alu 8 313 0 301 252 34 17 chr21 29783617 29783736 -5123834 + MLT1L LTR MaLR 147 267 -348 945 303 62 73 chr21 29784879 29785562 -5122008 + L1MEd LINE L1 745 1509 -981 555 121 0 12 chr21 29785565 29785691 -5121879 + FLAM_A SINE Alu 33 157 0 257 263 53 0 chr21 29785714 29785828 -5121742 + HAL1 LINE L1 1550 1669 -838 393 206 262 7 chr21 29785857 29785998 -5121572 + MER5B DNA MER1_type 2 178 0 213 333 125 0 chr21 29786298 29786394 -5121176 - MER5B DNA MER1_type -70 108 1 453 322 40 11 chr21 29787301 29787475 -5120095 - MER5A DNA MER1_type 0 189 11 353 197 145 92 chr21 29787819 29787971 -5119599 - MIR3 SINE MIR -34 174 15 462 18 0 0 chr21 29788264 29788319 -5119251 + (CA)n Simple_repeat Simple_repeat 1 55 0 2015 147 0 10 chr21 29790697 29791019 -5116551 + AluSx SINE Alu 1 312 0 233 284 71 55 chr21 29791078 29791205 -5116365 + MIR SINE MIR 2 130 -132 2026 120 7 13 chr21 29791227 29791527 -5116043 + AluJb SINE Alu 1 298 -14 1535 159 60 33 chr21 29792353 29792654 -5114916 + AluSx SINE Alu 1 309 -3 2026 82 4 50 chr21 29792654 29792934 -5114636 + AluSp SINE Alu 32 298 -15 274 295 36 29 chr21 29793129 29793268 -5114302 + L2 LINE L2 2920 3059 -213 1335 72 0 0 chr21 29794009 29794189 -5113381 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 465 213 33 0 chr21 29796007 29796129 -5111441 + L1M4 LINE L1 4908 5033 -1113 1332 149 63 22 chr21 29796214 29796436 -5111134 + AluJo SINE Alu 1 231 -81 272 26 0 26 chr21 29826627 29826665 -5080905 + (CATCC)n Simple_repeat Simple_repeat 1 37 0 4233 126 21 3 chr21 29826668 29828588 -5078982 - L1PBa LINE L1 -3160 3702 1691 1690 220 6 20 chr21 29828588 29829051 -5078519 + LTR2B LTR ERV1 1 490 0 2645 122 15 13 chr21 29829051 29829974 -5077596 - L1PBa LINE L1 -5169 1694 621 1143 158 5 0 chr21 29829962 29830158 -5077412 - L1PBa LINE L1 -6663 200 4 2129 139 21 17 chr21 29830180 29830582 -5076988 - MLT2A2 LTR ERVL -144 309 1 569 248 30 56 chr21 29830613 29830725 -5076845 + L1MC5 LINE L1 6966 7079 -882 2451 90 0 0 chr21 29830725 29831025 -5076545 + AluY SINE Alu 1 300 -11 569 248 30 56 chr21 29831025 29831182 -5076388 + L1MC5 LINE L1 7079 7228 -733 1095 159 10 35 chr21 29831513 29831714 -5075856 - AluJb SINE Alu -116 196 1 2197 118 7 0 chr21 29831719 29832015 -5075555 - AluY SINE Alu -13 298 1 424 337 78 45 chr21 29832203 29832446 -5075124 - L1MC4a LINE L1 -1926 5882 5632 2322 112 3 0 chr21 29832461 29832766 -5074804 - AluSq SINE Alu -7 306 1 1495 224 21 17 chr21 29834501 29834864 -5072706 - MER39 LTR ERV1 -2 690 340 484 244 71 16 chr21 29834864 29834991 -5072579 - MER39 LTR ERV1 -573 134 1 1884 89 4 0 chr21 29835058 29835328 -5072242 + L1PA8 LINE L1 5895 6165 -7 2411 90 3 0 chr21 29835331 29835630 -5071940 + AluSp SINE Alu 2 301 -12 2863 23 0 3 chr21 29835773 29836121 -5071449 + L1PA2 LINE L1 5809 6155 0 856 266 43 8 chr21 29836529 29836785 -5070785 + MLT1C LTR MaLR 7 271 -196 2208 116 18 6 chr21 29837033 29837360 -5070210 - THE1B LTR MaLR -9 355 25 301 282 9 18 chr21 29837872 29837982 -5069588 + (TG)n Simple_repeat Simple_repeat 2 110 0 1504 242 77 35 chr21 29838525 29839004 -5068566 + MLT1D LTR MaLR 7 505 0 2215 110 22 25 chr21 29839532 29839897 -5067673 + THE1B LTR MaLR 1 364 0 748 306 124 37 chr21 29840415 29840849 -5066721 + MLT1E LTR MaLR 11 482 -111 1014 135 112 12 chr21 29840852 29841022 -5066548 + AluJo SINE Alu 1 187 -125 246 265 36 0 chr21 29841052 29841135 -5066435 - MER45A DNA AcHobo -48 130 45 273 340 20 33 chr21 29841787 29841937 -5065633 + MIR3 SINE MIR 34 181 -27 734 212 31 28 chr21 29842289 29842505 -5065065 + MIR SINE MIR 34 251 -11 2366 113 0 0 chr21 29844130 29844440 -5063130 - AluSx SINE Alu -2 310 1 1165 11 11 58 chr21 29844447 29844636 -5062934 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 314 291 8 43 chr21 29844912 29845029 -5062541 - MER45A DNA AcHobo 0 178 66 246 130 93 0 chr21 29845278 29845332 -5062238 - MADE1 DNA Mariner 0 80 22 290 244 176 23 chr21 29845377 29845508 -5062062 - MIR SINE MIR -87 175 25 522 262 27 7 chr21 29846195 29846344 -5061226 + MLT1D LTR MaLR 1 152 -315 2195 135 0 0 chr21 29846491 29846803 -5060767 + AluSx SINE Alu 1 312 0 939 277 53 46 chr21 29847248 29847660 -5059910 + MLT1C LTR MaLR 53 467 0 2196 92 3 34 chr21 29847819 29848114 -5059456 + AluY SINE Alu 13 298 -13 2514 106 42 0 chr21 29848361 29848765 -5058805 - MSTA LTR MaLR -7 421 1 1023 243 18 4 chr21 29849139 29849374 -5058196 + MER33 DNA MER1_type 1 242 -2343 2179 128 0 10 chr21 29849374 29849679 -5057891 - AluSx SINE Alu -10 302 1 1023 243 18 4 chr21 29849679 29849715 -5057855 + MER33 DNA MER1_type 242 276 -48 2268 97 10 7 chr21 29850956 29851266 -5056304 + AluSq SINE Alu 1 311 -2 244 294 83 28 chr21 29853495 29853604 -5053966 - L2 LINE L2 0 3272 3158 865 219 89 2 chr21 29854482 29854706 -5052864 + MLT1D LTR MaLR 246 478 -27 1494 172 7 70 chr21 29855233 29855535 -5052035 + AluJo SINE Alu 14 296 -16 733 309 68 12 chr21 29855536 29855785 -5051785 - L1MC/D LINE L1 -2060 5748 5486 858 181 19 12 chr21 29857168 29857350 -5050220 - FRAM SINE Alu 0 40 1 276 137 0 0 chr21 29858070 29858121 -5049449 + (CA)n Simple_repeat Simple_repeat 2 52 0 2146 121 16 10 chr21 29858160 29858466 -5049104 + AluSx SINE Alu 1 308 -4 1399 197 10 68 chr21 29858613 29858792 -5048778 + MLT1A2 LTR MaLR 12 159 -215 204 40 0 0 chr21 29858792 29858817 -5048753 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 1399 197 10 68 chr21 29858817 29859022 -5048548 + MLT1A2 LTR MaLR 159 374 0 297 0 0 0 chr21 29859162 29859195 -5048375 + (TG)n Simple_repeat Simple_repeat 2 34 0 2257 123 34 17 chr21 29859535 29859893 -5047677 + THE1B LTR MaLR 1 364 0 278 301 21 0 chr21 29859943 29860036 -5047534 - L2 LINE L2 -39 3274 3180 314 254 59 17 chr21 29860303 29860421 -5047149 - L2 LINE L2 -251 3062 2940 2044 133 20 3 chr21 29861313 29861606 -5045964 + AluSx SINE Alu 1 298 -14 357 274 0 11 chr21 29862296 29862391 -5045179 - MLT1C LTR MaLR -18 372 279 902 228 101 22 chr21 29862488 29862764 -5044806 - MLT1C LTR MaLR -162 305 8 331 340 48 39 chr21 29863337 29863543 -5044027 + MIR SINE MIR 40 247 -15 904 209 55 41 chr21 29864165 29864385 -5043185 + MER58A DNA MER1_type 2 224 0 937 178 55 43 chr21 29864422 29864463 -5043107 - L1MC2 LINE L1 0 6344 6305 2779 59 3 0 chr21 29864463 29864817 -5042753 - THE1A LTR MaLR 0 355 1 937 178 55 43 chr21 29864817 29865028 -5042542 - L1MC2 LINE L1 -39 6305 6089 408 221 0 0 chr21 29865324 29865410 -5042160 - AluSp/q SINE Alu 0 303 218 194 228 140 35 chr21 29865678 29865792 -5041778 - L2 LINE L2 -213 3059 2934 343 322 0 0 chr21 29866070 29866157 -5041413 + polypurine Low_complexity Low_complexity 2 88 0 1559 216 74 11 chr21 29866840 29867205 -5040365 + MER6A DNA MER2_type 1 388 -217 388 153 0 0 chr21 29867205 29867277 -5040293 - L1MA5A LINE L1 -5 6292 6221 2149 128 0 0 chr21 29867329 29867617 -5039953 - AluSx SINE Alu -24 288 1 1956 164 5 31 chr21 29867683 29867940 -5039630 - L1MA5A LINE L1 -74 6223 5978 2447 99 0 0 chr21 29867940 29868243 -5039327 - AluSp SINE Alu -10 303 1 1956 164 5 31 chr21 29868243 29868368 -5039202 - L1MA5A LINE L1 -319 5978 5851 969 113 18 30 chr21 29868417 29868585 -5038985 - L1MA5A LINE L1 -452 5845 5680 1948 197 4 19 chr21 29868564 29869041 -5038529 + L1 LINE L1 4922 5391 -755 2083 105 51 35 chr21 29869068 29869440 -5038130 - MER83B LTR ERV1 0 378 1 1726 156 44 0 chr21 29869440 29869760 -5037810 - L1MA5A LINE L1 -1253 4893 4560 457 128 32 0 chr21 29869761 29869855 -5037715 + MER6A DNA MER2_type 359 455 -150 1643 174 68 3 chr21 29869855 29870148 -5037422 + AluJb SINE Alu 1 312 0 923 176 6 0 chr21 29870170 29870329 -5037241 + MER6A DNA MER2_type 446 605 0 1438 236 50 23 chr21 29871235 29871676 -5035894 - MLT1C LTR MaLR -7 460 8 400 231 75 8 chr21 29872593 29872727 -5034843 - MER69 DNA AcHobo 0 2526 2384 373 168 46 29 chr21 29873733 29873906 -5033664 + (TCCA)n Simple_repeat Simple_repeat 3 178 0 416 167 58 0 chr21 29873956 29874094 -5033476 + (TCCA)n Simple_repeat Simple_repeat 3 148 0 212 348 65 0 chr21 29875028 29875120 -5032450 + MIR SINE MIR 54 151 -57 671 159 19 6 chr21 29875776 29875933 -5031637 + (TCCA)n Simple_repeat Simple_repeat 2 160 0 495 206 19 0 chr21 29875944 29876099 -5031471 + (TCCA)n Simple_repeat Simple_repeat 1 158 0 783 144 17 17 chr21 29876111 29876291 -5031279 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 263 297 85 48 chr21 29876874 29877039 -5030531 + MER5A DNA MER1_type 14 184 -5 338 260 18 6 chr21 29877542 29877634 -5029936 + CT-rich Low_complexity Low_complexity 4 100 -74 2240 125 3 0 chr21 29877634 29877945 -5029625 - AluSx SINE Alu 0 312 1 338 260 18 6 chr21 29877945 29878021 -5029549 + CT-rich Low_complexity Low_complexity 100 174 0 487 280 32 0 chr21 29878234 29878391 -5029179 - L2 LINE L2 -280 3033 2872 520 276 25 46 chr21 29878650 29878846 -5028724 - MLT1H LTR MaLR -250 299 108 763 94 9 0 chr21 29878876 29878982 -5028588 - LTR47A LTR ERVL 0 452 346 985 145 0 0 chr21 29878994 29879139 -5028431 - FRAM SINE Alu -22 154 10 1290 172 95 60 chr21 29879148 29879496 -5028074 - LTR47A LTR ERVL -91 361 2 252 239 23 23 chr21 29879538 29879626 -5027944 + MER5A DNA MER1_type 26 113 -76 402 206 0 43 chr21 29879687 29879779 -5027791 - L2 LINE L2 -504 2810 2723 216 305 52 13 chr21 29879814 29879968 -5027602 - L2 LINE L2 -676 2638 2479 236 298 93 52 chr21 29880130 29880378 -5027192 - L2 LINE L2 -868 2446 2189 2427 108 0 3 chr21 29880386 29880700 -5026870 - AluSq SINE Alu 0 313 1 307 252 113 0 chr21 29880805 29880920 -5026650 - LTR37B LTR ERV1 -11 457 330 682 220 0 0 chr21 29882984 29883116 -5024454 + FLAM_C SINE Alu 1 132 -1 1435 181 4 26 chr21 29883154 29883420 -5024150 + AluJb SINE Alu 21 280 -32 1301 218 29 4 chr21 29883429 29883770 -5023800 + L1MB8 LINE L1 5451 5799 -365 402 290 22 0 chr21 29883765 29883903 -5023667 + L1MA10 LINE L1 6190 6330 -4 371 205 79 14 chr21 29883920 29884098 -5023472 + L1MB8 LINE L1 5969 6178 0 424 236 8 44 chr21 29884213 29884348 -5023222 - L1M4 LINE L1 -499 5665 5543 1839 166 36 7 chr21 29884420 29884721 -5022849 - AluJb SINE Alu -2 310 1 1316 258 78 10 chr21 29884976 29885488 -5022082 + MER114 LTR ERV 101 647 -1 2226 103 3 0 chr21 29885846 29886137 -5021433 - AluSx SINE Alu -20 292 1 2133 119 34 0 chr21 29886325 29886620 -5020950 - AluSp SINE Alu -8 305 1 26 30 0 0 chr21 29886628 29886661 -5020909 + AT_rich Low_complexity Low_complexity 1 33 0 1870 160 3 7 chr21 29887347 29887640 -5019930 + AluJb SINE Alu 1 292 -20 1898 149 10 17 chr21 29889093 29889395 -5018175 + AluJb SINE Alu 1 300 -12 2388 96 0 7 chr21 29889883 29890186 -5017384 - AluSq SINE Alu -12 301 1 604 200 22 12 chr21 29890958 29891113 -5016457 + MER45A DNA AcHobo 13 167 -11 253 231 3 77 chr21 29891895 29892034 -5015536 - MIR SINE MIR -1 207 77 30 27 0 0 chr21 29892328 29892365 -5015205 + AT_rich Low_complexity Low_complexity 1 37 0 2980 161 4 2 chr21 29892488 29892997 -5014573 - L1PA15 LINE L1 -2 6163 5654 2482 96 0 3 chr21 29893014 29893328 -5014242 - AluSq SINE Alu 0 313 1 1320 192 38 21 chr21 29893356 29893647 -5013923 - L1MB7 LINE L1 -110 6074 5779 1378 370 29 14 chr21 29893658 29894431 -5013139 - ERVL LTR ERVL -2370 3394 2611 1975 138 39 33 chr21 29894602 29894964 -5012606 - THE1B LTR MaLR 0 364 1 2161 92 3 7 chr21 29895059 29895381 -5012189 + AluY SINE Alu 1 321 0 1687 199 25 5 chr21 29895624 29896017 -5011553 - L1MB3 LINE L1 -2 6181 5781 279 0 0 0 chr21 29896017 29896048 -5011522 + (CA)n Simple_repeat Simple_repeat 1 31 0 24 77 0 0 chr21 29896510 29896562 -5011008 + AT_rich Low_complexity Low_complexity 1 52 0 737 143 54 0 chr21 29896562 29896674 -5010896 - FLAM_C SINE Alu -15 118 1 953 301 44 16 chr21 29896700 29897086 -5010484 - MLT2C1 LTR ERVL 0 397 1 589 368 18 4 chr21 29897091 29897363 -5010207 - ERVL LTR ERVL -3436 1560 1285 365 215 11 21 chr21 29897651 29897744 -5009826 - MER34 LTR ERV1 -2 540 449 2269 98 3 10 chr21 29897777 29898082 -5009488 + AluSc SINE Alu 5 307 -2 1419 217 13 19 chr21 29898182 29898238 -5009332 - MLT1A1 LTR MaLR -54 311 256 2165 180 72 7 chr21 29898238 29898693 -5008877 - MER66B LTR ERV1 0 486 2 1419 217 13 19 chr21 29898693 29898949 -5008621 - MLT1A1 LTR MaLR -109 256 1 848 108 0 8 chr21 29901333 29901453 -5006117 - AluJb SINE Alu -193 119 1 894 179 21 5 chr21 29901581 29901771 -5005799 + L1MB2 LINE L1 5971 6163 -8 414 0 0 0 chr21 29901771 29901817 -5005753 + (TG)n Simple_repeat Simple_repeat 1 46 0 1865 102 0 0 chr21 29901820 29902055 -5005515 - AluSx SINE Alu -36 276 42 415 321 72 36 chr21 29902815 29903120 -5004450 - L2 LINE L2 -1 3312 2997 1869 139 62 34 chr21 29903229 29903581 -5003989 + THE1B LTR MaLR 3 364 0 2200 125 0 0 chr21 29903662 29903959 -5003611 + AluSx SINE Alu 3 299 -13 242 164 55 68 chr21 29908919 29908992 -4998578 + MIR SINE MIR 128 199 -63 1451 207 40 17 chr21 29909816 29910164 -4997406 - MLT1B LTR MaLR -34 356 1 917 71 7 32 chr21 29910999 29911154 -4996416 + (TTTC)n Simple_repeat Simple_repeat 2 152 0 209 200 89 100 chr21 29911806 29911896 -4995674 - MIR SINE MIR -131 131 43 211 111 56 14 chr21 29912685 29912757 -4994813 + (CA)n Simple_repeat Simple_repeat 1 75 0 611 96 45 28 chr21 29912772 29912949 -4994621 + (CA)n Simple_repeat Simple_repeat 1 180 0 238 294 92 42 chr21 29913561 29913799 -4993771 + L1MC5 LINE L1 6968 7217 -744 23 97 0 0 chr21 29914881 29914953 -4992617 + AT_rich Low_complexity Low_complexity 1 72 0 255 242 110 0 chr21 29915316 29915407 -4992163 - MER114 LTR ERV -457 191 91 1879 166 3 16 chr21 29915660 29915967 -4991603 + AluJb SINE Alu 1 303 -9 816 239 80 59 chr21 29916264 29916759 -4990811 - L1ME1 LINE L1 -88 6078 5568 1168 73 0 0 chr21 29916759 29916910 -4990660 - AluY SINE Alu 0 311 161 1025 229 43 40 chr21 29916910 29917141 -4990429 - L1ME1 LINE L1 -593 5573 5344 2399 113 0 0 chr21 29917141 29917451 -4990119 - AluSx SINE Alu -2 310 1 1025 229 43 40 chr21 29917451 29917711 -4989859 - L1ME1 LINE L1 -822 5344 5081 936 134 34 20 chr21 29917712 29917861 -4989709 + AluJo SINE Alu 1 151 -161 248 261 135 9 chr21 29918916 29919027 -4988543 + MIR SINE MIR 21 145 -117 704 190 30 60 chr21 29919058 29919258 -4988312 + MLT1H LTR MaLR 1 194 -355 799 128 24 0 chr21 29919776 29919901 -4987669 - FLAM_A SINE Alu -3 130 3 1946 114 0 0 chr21 29919902 29920156 -4987414 - AluY SINE Alu -12 299 46 180 0 0 0 chr21 29920751 29920771 -4986799 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 206 309 118 15 chr21 29920954 29921090 -4986480 + MER5A DNA MER1_type 22 171 -18 610 209 74 0 chr21 29920969 29921117 -4986453 - MER5A DNA MER1_type -28 161 3 244 236 0 0 chr21 29922589 29922644 -4984926 + MIR SINE MIR 91 145 -63 306 214 0 0 chr21 29923477 29923561 -4984009 + (CA)n Simple_repeat Simple_repeat 2 85 0 204 229 14 43 chr21 29924509 29924579 -4982991 + GA-rich Low_complexity Low_complexity 5 72 0 237 313 0 0 chr21 29924527 29924594 -4982976 + G-rich Low_complexity Low_complexity 6 72 0 1157 215 115 56 chr21 29924933 29925394 -4982176 - MLT1D LTR MaLR -17 488 1 1679 183 36 22 chr21 29926688 29927048 -4980522 + MLT1A1 LTR MaLR 1 365 0 502 262 92 6 chr21 29927462 29927626 -4979944 + MIR SINE MIR 10 187 -75 228 313 85 35 chr21 29927732 29927933 -4979637 - MER46C DNA MER2_type -47 291 81 2138 74 0 0 chr21 29928572 29928829 -4978741 + AluY SINE Alu 44 300 -11 2269 177 33 9 chr21 29929608 29930059 -4977511 - L1MA9 LINE L1 -317 5995 5534 2730 145 40 9 chr21 29930400 29931042 -4976528 - L1MA9 LINE L1 -725 5566 4909 1392 233 55 0 chr21 29932492 29932836 -4974734 - MER89 LTR ERV1 0 559 197 2345 114 0 0 chr21 29932991 29933297 -4974273 + AluSx SINE Alu 1 306 -6 290 273 26 0 chr21 29933703 29933780 -4973790 - MIR SINE MIR -65 143 65 1260 111 0 1 chr21 29933884 29934554 -4973016 + (TCCA)n Simple_repeat Simple_repeat 1 849 0 982 252 44 9 chr21 29935194 29935512 -4972058 - L1ME4a LINE L1 -265 5856 5528 421 203 23 25 chr21 29936333 29936502 -4971068 - MIR SINE MIR 0 262 58 657 129 0 36 chr21 29936919 29937059 -4970511 + Ricksha DNA DNA 2434 2568 -683 1280 163 60 0 chr21 29937059 29937274 -4970296 - AluJb SINE Alu -1 311 84 3109 138 39 93 chr21 29937274 29937976 -4969594 + Ricksha DNA DNA 2566 3229 -25 2451 105 60 5 chr21 29938706 29939106 -4968464 - MSTA LTR MaLR 0 428 7 1773 208 62 44 chr21 29940144 29940428 -4967142 - MLT2B2 LTR ERVL -5 510 212 2596 85 3 0 chr21 29940428 29940782 -4966788 + THE1A LTR MaLR 1 355 0 1773 208 62 44 chr21 29940782 29940997 -4966573 - MLT2B2 LTR ERVL -303 212 2 343 318 45 8 chr21 29941226 29941358 -4966212 + MIR SINE MIR 47 183 -79 235 290 16 0 chr21 29941766 29941828 -4965742 - MIR SINE MIR -39 223 161 398 204 34 88 chr21 29942086 29942142 -4965428 - MIR SINE MIR -109 153 96 2211 132 56 3 chr21 29942142 29942498 -4965072 - THE1C LTR MaLR 0 375 1 398 204 34 88 chr21 29942498 29942588 -4964982 - MIR SINE MIR -166 96 15 320 258 81 40 chr21 29942775 29942899 -4964671 - MIR SINE MIR -48 214 86 1734 173 7 30 chr21 29943007 29943308 -4964262 + AluJo SINE Alu 1 294 -18 3073 172 21 0 chr21 29943319 29943899 -4963671 + L1MB3 LINE L1 5584 6175 -8 563 283 44 6 chr21 29944633 29944813 -4962757 - MIR SINE MIR 0 262 76 228 100 0 0 chr21 29945166 29945206 -4962364 + (CA)n Simple_repeat Simple_repeat 1 40 0 1206 231 41 62 chr21 29945570 29946037 -4961533 + MLT1C LTR MaLR 11 467 0 651 245 22 38 chr21 29946721 29946905 -4960665 - HAL1 LINE L1 -27 2480 2300 704 261 22 65 chr21 29946921 29947243 -4960327 - HAL1 LINE L1 -271 2236 1929 385 322 68 44 chr21 29947703 29947998 -4959572 - HAL1 LINE L1 -2021 486 185 384 267 73 56 chr21 29948009 29948255 -4959315 - MLT1J LTR MaLR -11 604 244 189 0 0 0 chr21 29948362 29948383 -4959187 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1509 130 4 26 chr21 29948387 29948617 -4958953 - AluJb SINE Alu -30 282 58 2373 228 11 70 chr21 29948619 29948795 -4958775 + L1ME1 LINE L1 5495 5680 -486 2209 136 0 0 chr21 29948795 29949103 -4958467 + AluSx SINE Alu 1 308 -4 2373 228 11 70 chr21 29949103 29949624 -4957946 + L1ME1 LINE L1 5680 6151 -15 1265 170 5 5 chr21 29949675 29949875 -4957695 - AluJo SINE Alu -107 205 6 1147 192 9 22 chr21 29949933 29950162 -4957408 + AluJo SINE Alu 80 305 -7 600 202 107 28 chr21 29951747 29951925 -4955645 - MLT1C LTR MaLR 0 467 276 1087 225 41 48 chr21 29951934 29952250 -4955320 - MLT1C LTR MaLR -153 314 1 216 250 0 0 chr21 29952265 29952332 -4955238 + G-rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr21 29952786 29952810 -4954760 + AT_rich Low_complexity Low_complexity 1 24 0 349 259 8 53 chr21 29953078 29953147 -4954423 + L1ME4a LINE L1 5974 6036 -85 2170 144 0 0 chr21 29953147 29953459 -4954111 - AluSx SINE Alu 0 312 1 349 259 8 53 chr21 29953459 29953520 -4954050 + L1ME4a LINE L1 6036 6098 -23 3504 67 94 0 chr21 29954561 29955071 -4952499 + LTR6B LTR ERV1 1 558 0 280 238 88 0 chr21 29955463 29955543 -4952027 + MLT1L LTR MaLR 325 411 -204 689 241 58 98 chr21 29956605 29957003 -4950567 + MLT1D LTR MaLR 123 504 -1 969 285 26 45 chr21 29958139 29958407 -4949163 - MLT1C LTR MaLR -92 375 115 2200 139 0 0 chr21 29958407 29958716 -4948854 - AluSx SINE Alu -3 309 1 969 285 26 45 chr21 29958716 29958829 -4948741 - MLT1C LTR MaLR -352 115 1 194 247 78 0 chr21 29958845 29958922 -4948648 - MIR3 SINE MIR -45 163 81 432 220 11 0 chr21 29959182 29959284 -4948286 - MLT1C LTR MaLR -92 384 285 2120 96 0 59 chr21 29959530 29959854 -4947716 + AluSx SINE Alu 7 311 -1 3666 193 45 10 chr21 29960163 29960945 -4946625 - L1MB8 LINE L1 0 6178 5370 534 306 100 0 chr21 29961338 29961518 -4946052 - MLT1E2 LTR MaLR 0 626 429 1427 182 52 23 chr21 29961519 29961817 -4945753 + THE1C LTR MaLR 1 310 -65 2191 102 7 0 chr21 29961817 29962112 -4945458 - AluSx SINE Alu -15 297 1 2216 116 32 71 chr21 29963527 29963600 -4943970 - THE1B LTR MaLR 0 364 290 1818 153 19 25 chr21 29963600 29963914 -4943656 + AluSx SINE Alu 1 312 0 2216 116 32 71 chr21 29963914 29964219 -4943351 - THE1B LTR MaLR -74 290 1 26 0 0 0 chr21 29964948 29964974 -4942596 + AT_rich Low_complexity Low_complexity 1 26 0 355 230 20 40 chr21 29965013 29965086 -4942484 - MER53 DNA DNA 0 189 116 980 130 0 0 chr21 29965086 29965217 -4942353 + FLAM_C SINE Alu 1 131 -2 322 39 39 0 chr21 29965217 29965269 -4942301 + (TA)n Simple_repeat Simple_repeat 2 55 0 355 230 20 40 chr21 29965269 29965342 -4942228 - MER53 DNA DNA -71 118 45 475 178 41 107 chr21 29965362 29965531 -4942039 - MER53 DNA DNA -27 162 5 23 0 0 0 chr21 29966440 29966463 -4941107 + GC_rich Low_complexity Low_complexity 1 23 0 602 194 6 18 chr21 29966521 29966686 -4940884 + CT-rich Low_complexity Low_complexity 3 165 0 225 0 0 0 chr21 29968984 29969009 -4938561 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 1077 255 51 27 chr21 29969331 29969738 -4937832 - L1MB5 LINE L1 -213 5961 5658 197 200 46 46 chr21 29969816 29969881 -4937689 - MIR SINE MIR -105 103 39 533 319 57 32 chr21 29971045 29971327 -4936243 - HAL1 LINE L1 -6 2501 2213 1485 294 73 52 chr21 29971483 29972551 -4935019 + L1MEd LINE L1 26 1115 -5004 1134 305 58 52 chr21 29972552 29973090 -4934480 - HAL1 LINE L1 -928 1579 1039 252 0 0 0 chr21 29973091 29973119 -4934451 + (CA)n Simple_repeat Simple_repeat 2 29 0 338 186 114 93 chr21 29973149 29973386 -4934184 - HAL1 LINE L1 -1523 984 743 354 247 96 48 chr21 29975724 29975890 -4931680 - MER104 DNA MER2_type 0 180 7 324 0 0 0 chr21 29976100 29976136 -4931434 + (TTC)n Simple_repeat Simple_repeat 2 37 0 291 28 0 0 chr21 29976136 29976172 -4931398 + (TTA)n Simple_repeat Simple_repeat 2 37 0 1386 201 53 9 chr21 29978128 29978446 -4929124 + L1MC4 LINE L1 6674 7005 -1037 611 181 24 6 chr21 29978534 29978678 -4928892 + L1MC4 LINE L1 7361 7501 -307 1233 234 74 3 chr21 29978827 29979164 -4928406 + L1MC4 LINE L1 7678 8038 -4 865 73 81 0 chr21 29987920 29988044 -4919526 + MER85 DNA T2_type 1 134 -5 344 296 28 0 chr21 29988638 29988746 -4918824 + L1MB2 LINE L1 6054 6164 -7 958 218 17 38 chr21 29988778 29989017 -4918553 + L1MB5 LINE L1 5927 6160 -14 196 269 102 46 chr21 29989565 29989673 -4917897 + L2 LINE L2 3157 3270 -2 237 65 0 0 chr21 29989967 29989998 -4917572 + (A)n Simple_repeat Simple_repeat 1 31 0 2108 114 7 0 chr21 29990756 29991055 -4916515 - AluJb SINE Alu -11 301 1 1623 116 8 31 chr21 29992829 29993088 -4914482 + L1PA8 LINE L1 5919 6171 -1 484 252 70 7 chr21 29993190 29993333 -4914237 + MIR SINE MIR 40 191 -71 207 0 0 0 chr21 29993350 29993373 -4914197 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2257 90 3 3 chr21 29997316 29997616 -4909954 + AluSq SINE Alu 1 300 -13 349 230 90 15 chr21 29997776 29997796 -4909774 - L1MB7 LINE L1 0 6184 6167 2300 92 0 0 chr21 29997796 29998099 -4909471 + AluSg SINE Alu 1 303 -7 189 0 0 0 chr21 29998099 29998120 -4909450 + (TA)n Simple_repeat Simple_repeat 1 21 0 315 0 0 0 chr21 29998119 29998154 -4909416 + (GA)n Simple_repeat Simple_repeat 2 36 0 349 230 90 15 chr21 29998120 29998718 -4908852 - L1MB7 LINE L1 -16 6168 5564 749 270 5 5 chr21 29998720 29998905 -4908665 + MER58A DNA MER1_type 40 224 0 1819 151 27 3 chr21 29999170 29999469 -4908101 - AluSx SINE Alu -6 306 1 695 216 244 0 chr21 30000057 30000233 -4907337 + MER20 DNA MER1_type 1 219 0 349 213 32 0 chr21 30005849 30005943 -4901627 - MER97c DNA MER1_type? -771 319 223 220 167 56 19 chr21 30006877 30006931 -4900639 + (CCCCAG)n Simple_repeat Simple_repeat 1 56 0 721 199 110 49 chr21 30007378 30007624 -4899946 - L1MD2 LINE L1 -15 6344 6084 558 213 7 52 chr21 30007648 30007803 -4899767 - L1MD2 LINE L1 -360 5999 5852 189 259 86 0 chr21 30008787 30008845 -4898725 - L2 LINE L2 -5 3308 3246 219 319 0 0 chr21 30009460 30009532 -4898038 + G-rich Low_complexity Low_complexity 3 74 0 245 371 58 5 chr21 30010716 30010921 -4896649 + L2 LINE L2 2065 2280 -1034 390 231 22 0 chr21 30011552 30011643 -4895927 + Zaphod DNA AcHobo 3872 3964 -59 231 209 80 31 chr21 30012710 30012868 -4894702 + L2 LINE L2 2800 2968 -345 1478 191 62 84 chr21 30013323 30013811 -4893759 + L1MB5 LINE L1 5647 6123 -51 559 200 48 16 chr21 30013811 30013936 -4893634 - FLAM_A SINE Alu -4 138 10 1349 236 123 14 chr21 30013995 30014411 -4893159 - MER119 DNA MER1_type -119 464 4 893 195 25 85 chr21 30016053 30016173 -4891397 + MLT1C LTR MaLR 5 131 -336 2301 62 0 24 chr21 30016173 30016484 -4891086 + AluY SINE Alu 1 304 0 893 195 25 85 chr21 30016484 30016644 -4890926 + MLT1C LTR MaLR 131 269 -198 546 184 8 48 chr21 30016986 30017111 -4890459 + MLT1C LTR MaLR 348 467 0 488 199 0 6 chr21 30017651 30017812 -4889758 + (CA)n Simple_repeat Simple_repeat 2 161 0 315 104 0 0 chr21 30017812 30017860 -4889710 + MLT2D LTR ERVL 367 414 0 31 44 0 0 chr21 30018242 30018287 -4889283 + GC_rich Low_complexity Low_complexity 1 45 0 230 86 29 43 chr21 30018804 30018874 -4888696 + (TTTTTG)n Simple_repeat Simple_repeat 1 69 0 3006 134 96 51 chr21 30019253 30019844 -4887726 + MER51A LTR ERV1 1 618 -16 22 56 0 0 chr21 30020100 30020136 -4887434 + AT_rich Low_complexity Low_complexity 1 36 0 229 193 59 0 chr21 30020413 30020548 -4887022 + (TCTA)n Simple_repeat Simple_repeat 2 144 0 324 351 39 29 chr21 30020598 30020803 -4886767 + L1MC4a LINE L1 6063 6269 -1539 306 123 0 35 chr21 30020872 30020929 -4886641 + (GAAA)n Simple_repeat Simple_repeat 2 56 0 617 212 0 27 chr21 30020929 30021113 -4886457 + GA-rich Low_complexity Low_complexity 2 180 0 1696 188 23 16 chr21 30021304 30021613 -4885957 + AluJo SINE Alu 1 311 -1 609 299 14 32 chr21 30022057 30022304 -4885266 + L1MA8 LINE L1 6019 6262 -29 2513 79 7 0 chr21 30022304 30022609 -4884961 - AluSq SINE Alu -6 307 1 609 299 14 32 chr21 30022609 30022639 -4884931 + L1MA8 LINE L1 6262 6291 0 2441 82 0 22 chr21 30023153 30023468 -4884102 - AluSx SINE Alu -4 308 1 25 0 0 0 chr21 30023468 30023493 -4884077 + AT_rich Low_complexity Low_complexity 1 25 0 2551 90 67 38 chr21 30023604 30024025 -4883545 + LTR3b LTR ERVK 1 433 -4 372 291 50 39 chr21 30024429 30024580 -4882990 + HAL1 LINE L1 991 1146 -1361 2211 96 0 57 chr21 30024580 30024912 -4882658 + AluSq SINE Alu 1 313 0 372 291 50 39 chr21 30024912 30024942 -4882628 + HAL1 LINE L1 1146 1174 -1333 330 125 31 0 chr21 30025083 30025147 -4882423 - L1ME LINE L1 -452 5712 5647 595 69 0 0 chr21 30025204 30025291 -4882279 + Alu SINE Alu 225 311 0 307 212 12 12 chr21 30025343 30025423 -4882147 - L1MC2 LINE L1 -132 6212 6133 2228 104 0 43 chr21 30025426 30025772 -4881798 + AluSx SINE Alu 1 332 0 2141 142 3 3 chr21 30025951 30026261 -4881309 + AluJb SINE Alu 1 310 -2 25 0 0 0 chr21 30027069 30027094 -4880476 + AT_rich Low_complexity Low_complexity 1 25 0 2302 88 3 0 chr21 30027095 30027380 -4880190 + AluSp SINE Alu 1 286 -27 423 0 0 0 chr21 30027380 30027427 -4880143 + (CA)n Simple_repeat Simple_repeat 2 48 0 1708 182 0 30 chr21 30027756 30028053 -4879517 + AluJb SINE Alu 1 288 -24 876 222 46 24 chr21 30029308 30029617 -4877953 + L1MD2 LINE L1 5568 5869 -490 1852 103 0 4 chr21 30029617 30029869 -4877701 + AluSg SINE Alu 60 310 0 876 222 46 24 chr21 30029869 30030154 -4877416 + L1MD2 LINE L1 5869 6342 -17 1928 117 11 0 chr21 30030209 30030473 -4877097 + AluSx SINE Alu 38 304 -8 580 156 8 16 chr21 30030528 30030650 -4876920 + L1MD2 LINE L1 5896 6016 -343 360 183 0 76 chr21 30030682 30030987 -4876583 + G-rich Low_complexity Low_complexity 1 281 0 1474 180 8 45 chr21 30030987 30031254 -4876316 - AluJb SINE Alu -55 257 1 549 314 77 16 chr21 30031257 30031451 -4876119 - L1MEc LINE L1 -4469 1927 1722 231 288 25 0 chr21 30031451 30031531 -4876039 - L1PA15-16 LINE L1 -4158 2691 2610 2552 129 61 68 chr21 30031539 30031840 -4875730 - Ricksha DNA DNA -7 3247 2950 2415 95 0 0 chr21 30031840 30032136 -4875434 - AluSq SINE Alu -17 296 1 2552 129 61 68 chr21 30032136 30032407 -4875163 - Ricksha DNA DNA -304 2950 2679 2320 164 56 12 chr21 30032405 30032888 -4874682 - Ricksha DNA DNA -1936 110 1 2460 262 48 26 chr21 30032888 30033222 -4874348 - L1MEc LINE L1 -4749 1647 1322 2533 60 0 3 chr21 30033222 30033520 -4874050 - AluSc SINE Alu -12 297 1 2460 262 48 26 chr21 30033520 30034583 -4872987 - L1MEc LINE L1 -5074 1322 142 2285 103 7 0 chr21 30034599 30034899 -4872671 - AluSx SINE Alu -10 302 1 720 204 8 0 chr21 30035347 30035479 -4872091 - FLAM_C SINE Alu 0 133 1 2311 118 0 0 chr21 30037590 30037895 -4869675 + AluSx SINE Alu 1 305 -7 2355 103 3 0 chr21 30044023 30044323 -4863247 - AluSx SINE Alu -11 301 1 306 149 65 6 chr21 30079118 30079286 -4828284 + (CA)n Simple_repeat Simple_repeat 1 178 0 294 189 189 21 chr21 30079892 30079987 -4827583 - MER20 DNA MER1_type -93 126 16 300 238 12 12 chr21 30080033 30080117 -4827453 + MER5B DNA MER1_type 87 170 -8 216 332 0 0 chr21 30084453 30084567 -4823003 + C-rich Low_complexity Low_complexity 2 187 0 212 182 0 23 chr21 30084957 30085001 -4822569 + (CCCCAG)n Simple_repeat Simple_repeat 2 44 0 2042 172 77 22 chr21 30085810 30086263 -4821307 + L1MB3 LINE L1 5701 6178 -5 378 270 37 22 chr21 30087873 30088012 -4819558 + L1ME1 LINE L1 6018 6161 -5 2062 110 10 3 chr21 30088715 30089016 -4818554 + AluSx SINE Alu 3 305 -7 564 286 46 27 chr21 30089388 30089717 -4817853 + L1MEd LINE L1 895 1229 -4890 636 326 77 52 chr21 30089725 30090164 -4817406 + L1MEd LINE L1 1240 1689 -4440 456 301 55 7 chr21 30090341 30090487 -4817083 - L1M4 LINE L1 -3563 2583 2431 421 269 50 38 chr21 30090441 30090601 -4816969 + L1MEd LINE L1 2900 3061 -3068 296 249 156 0 chr21 30090614 30090787 -4816783 + L1MEd LINE L1 3094 3293 -2836 977 280 51 42 chr21 30090813 30091037 -4816533 - HAL1 LINE L1 -188 2319 2099 2297 89 3 0 chr21 30091037 30091339 -4816231 - AluSc SINE Alu -6 303 1 2109 122 0 0 chr21 30091339 30091635 -4815935 - AluSx SINE Alu -16 296 1 288 70 0 0 chr21 30091638 30091681 -4815889 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 977 280 51 42 chr21 30091681 30092004 -4815566 - HAL1 LINE L1 -409 2098 1762 932 226 23 0 chr21 30092352 30092529 -4815041 + FRAM SINE Alu 1 176 0 405 0 0 0 chr21 30092965 30093010 -4814560 + (CA)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr21 30093092 30093123 -4814447 + (CA)n Simple_repeat Simple_repeat 2 32 0 297 0 0 0 chr21 30093260 30093293 -4814277 + (CA)n Simple_repeat Simple_repeat 2 34 0 1785 136 31 7 chr21 30094972 30095259 -4812311 + AluJb SINE Alu 1 294 -18 237 181 213 12 chr21 30095929 30096015 -4811555 - MIR SINE MIR -60 148 60 1795 127 33 4 chr21 30097848 30098124 -4809446 + AluSx SINE Alu 13 296 -16 238 196 0 0 chr21 30098130 30098181 -4809389 + L1ME1 LINE L1 6106 6156 -10 1974 143 3 0 chr21 30098215 30098516 -4809054 + AluSx SINE Alu 11 312 0 1615 161 30 23 chr21 30099002 30099307 -4808263 + AluJo SINE Alu 1 307 -5 764 250 40 28 chr21 30101481 30101729 -4805841 + MLT1C LTR MaLR 200 450 -17 250 220 17 0 chr21 30102046 30102105 -4805465 - MER116 DNA Mariner -12 68 9 189 229 0 0 chr21 30102307 30102355 -4805215 + (CA)n Simple_repeat Simple_repeat 2 49 0 366 297 97 11 chr21 30102389 30102574 -4804996 + MIR SINE MIR 22 222 -40 1352 216 91 0 chr21 30102578 30102897 -4804673 + MER7A DNA MER2_type 1 346 0 885 79 0 62 chr21 30104463 30104692 -4802878 + (TCCC)n Simple_repeat Simple_repeat 1 214 0 758 112 59 12 chr21 30104692 30104862 -4802708 + CT-rich Low_complexity Low_complexity 3 180 0 1848 154 3 16 chr21 30106024 30106335 -4801235 + AluJb SINE Alu 1 307 -5 2032 111 3 13 chr21 30108973 30109271 -4798299 - AluSg SINE Alu -15 295 1 915 161 7 0 chr21 30109531 30109686 -4797884 - AluJb SINE Alu -22 290 135 226 217 60 48 chr21 30109970 30110053 -4797517 + MIR SINE MIR 117 200 -62 2152 96 3 0 chr21 30111449 30111740 -4795830 + AluSx SINE Alu 12 303 -9 751 187 48 43 chr21 30111793 30111980 -4795590 + MER5A DNA MER1_type 2 189 0 928 245 50 66 chr21 30112228 30112398 -4795172 + L1M4 LINE L1 4681 4852 -1294 2352 65 0 3 chr21 30112398 30112692 -4794878 - AluSc SINE Alu -16 293 1 928 245 50 66 chr21 30112692 30112978 -4794592 + L1M4 LINE L1 4852 5130 -1016 329 317 130 10 chr21 30113162 30113462 -4794108 + L2 LINE L2 2550 2885 -429 1584 184 20 0 chr21 30114292 30114591 -4792979 - AluJo SINE Alu -7 305 1 906 133 7 0 chr21 30115996 30116139 -4791431 - FAM SINE Alu -23 162 19 3044 206 14 80 chr21 30116280 30116330 -4791240 - L1MD1 LINE L1 -273 5969 5917 1936 101 72 0 chr21 30116330 30116608 -4790962 + AluSq SINE Alu 6 303 -10 3044 206 14 80 chr21 30116608 30117233 -4790337 - L1MD1 LINE L1 -325 5917 5360 2288 88 10 0 chr21 30117233 30117538 -4790032 - AluSg SINE Alu -2 308 1 3044 206 14 80 chr21 30117538 30117834 -4789736 - L1MD1 LINE L1 -882 5360 5046 929 129 7 0 chr21 30117846 30117985 -4789585 - AluSg/x SINE Alu -27 283 144 2005 118 7 16 chr21 30117990 30118295 -4789275 - AluSp SINE Alu -11 302 1 260 312 0 0 chr21 30118302 30118395 -4789175 - L1P LINE L1 -1112 5034 4942 650 305 25 53 chr21 30118425 30118710 -4788860 - L1MD1 LINE L1 -1263 4883 4607 561 174 56 66 chr21 30118726 30118922 -4788648 - MER33 DNA MER1_type -95 229 36 317 341 34 22 chr21 30119356 30119535 -4788035 + MIR3 SINE MIR 3 183 -25 278 256 142 24 chr21 30120708 30120919 -4786651 - HAL1 LINE L1 -66 2441 2206 839 125 53 33 chr21 30121078 30121230 -4786340 - L1MA5A LINE L1 -1 6296 6142 893 301 56 28 chr21 30121657 30122118 -4785452 - HAL1 LINE L1 -648 1859 1386 1543 185 0 70 chr21 30122314 30122644 -4784926 + AluSx SINE Alu 2 308 -4 216 0 0 0 chr21 30123053 30123077 -4784493 + (TA)n Simple_repeat Simple_repeat 2 25 0 358 115 0 0 chr21 30123519 30123571 -4783999 + AluJ/FLAM SINE Alu 14 65 -237 1153 255 101 7 chr21 30123938 30124366 -4783204 - Charlie2 DNA MER1_type -17 2845 2378 1598 171 53 3 chr21 30124391 30124695 -4782875 - MER7A DNA MER2_type 0 346 30 229 276 151 50 chr21 30125477 30125966 -4781604 + L2 LINE L2 2713 3313 0 53 69 0 0 chr21 30127360 30127462 -4780108 + GC_rich Low_complexity Low_complexity 1 102 0 210 265 0 20 chr21 30127463 30127561 -4780009 + G-rich Low_complexity Low_complexity 4 99 0 243 189 38 45 chr21 30127676 30127808 -4779762 + (CGGGG)n Simple_repeat Simple_repeat 5 135 0 21 0 0 0 chr21 30127899 30127920 -4779650 + GC_rich Low_complexity Low_complexity 1 21 0 215 207 27 45 chr21 30127939 30128050 -4779520 + (CGGG)n Simple_repeat Simple_repeat 4 112 0 1432 129 48 5 chr21 30128793 30129003 -4778567 + AluJo SINE Alu 86 304 -8 309 305 16 32 chr21 30130049 30130236 -4777334 + L1MC4 LINE L1 7690 7873 -169 2317 96 0 0 chr21 30131151 30131453 -4776117 + AluSq SINE Alu 1 302 0 761 280 65 0 chr21 30131514 30131746 -4775824 + MIR SINE MIR 16 262 0 2350 82 21 0 chr21 30131769 30132060 -4775510 - AluSx SINE Alu -15 297 1 2043 105 51 20 chr21 30135254 30135550 -4772020 + AluSx SINE Alu 1 305 -7 2305 79 3 41 chr21 30138179 30138494 -4769076 - AluSx SINE Alu -9 303 1 1865 174 38 82 chr21 30140509 30140987 -4766583 + MLT1C LTR MaLR 1 457 -10 254 263 71 30 chr21 30141165 30141264 -4766306 - MER5B DNA MER1_type -75 103 1 908 121 0 35 chr21 30141575 30141716 -4765854 + AluJo SINE Alu 1 136 -176 801 169 0 14 chr21 30141806 30141948 -4765622 + FRAM SINE Alu 36 175 -1 2452 86 3 0 chr21 30142245 30142549 -4765021 - AluSg SINE Alu -5 305 1 1588 201 92 0 chr21 30143522 30143870 -4763700 + MLT2C1 LTR ERVL 18 397 0 198 0 0 0 chr21 30145258 30145280 -4762290 + (A)n Simple_repeat Simple_repeat 1 22 0 736 214 28 70 chr21 30146369 30146584 -4760986 - MER20 DNA MER1_type -13 206 1 1501 60 0 16 chr21 30148645 30148850 -4758720 + AluY SINE Alu 106 307 0 1027 135 0 0 chr21 30149365 30149506 -4758064 + AluJb SINE Alu 1 141 -171 31 68 0 0 chr21 30149530 30149589 -4757981 + AT_rich Low_complexity Low_complexity 1 59 0 910 259 24 0 chr21 30150388 30150600 -4756970 - MER58A DNA MER1_type 0 224 8 2167 245 68 63 chr21 30151300 30152099 -4755471 + MER21B LTR ERV1 13 815 -48 3690 161 6 0 chr21 30152490 30153118 -4754452 + MER41B LTR ERV1 3 634 -1 2456 101 0 0 chr21 30153861 30154168 -4753402 - AluSx SINE Alu -5 307 1 189 0 0 0 chr21 30154905 30154926 -4752644 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2044 126 25 0 chr21 30154929 30155215 -4752355 - AluSq SINE Alu -20 293 1 339 317 35 20 chr21 30156598 30156797 -4750773 + L1MC4 LINE L1 7688 7889 -153 754 142 15 8 chr21 30157538 30157672 -4749898 + L1MB3 LINE L1 6046 6180 -3 189 0 0 0 chr21 30157674 30157695 -4749875 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 233 287 70 49 chr21 30158142 30158285 -4749285 - L1ME4a LINE L1 -2 6119 5974 502 181 35 9 chr21 30158347 30158463 -4749107 + MER3 DNA MER1_type 91 209 0 227 200 20 0 chr21 30158421 30158471 -4749099 - MER3 DNA MER1_type -119 90 40 877 118 0 0 chr21 30158565 30158684 -4748886 - FLAM_C SINE Alu -24 119 1 239 358 73 38 chr21 30158684 30159028 -4748542 - L1ME4a LINE L1 -227 5894 5539 374 282 73 48 chr21 30159034 30159240 -4748330 - L1ME4a LINE L1 -2322 5486 5276 504 332 54 47 chr21 30159632 30159909 -4747661 - L1ME4a LINE L1 -2154 3992 3714 1997 133 20 20 chr21 30159936 30160236 -4747334 - AluSg SINE Alu -8 302 3 1889 141 0 35 chr21 30160238 30160551 -4747019 - AluJo SINE Alu -9 303 2 2659 58 0 0 chr21 30161029 30161338 -4746232 - AluSg SINE Alu 0 310 2 21 0 0 0 chr21 30161338 30161359 -4746211 + AT_rich Low_complexity Low_complexity 1 21 0 2231 63 8 4 chr21 30162521 30162789 -4744781 + AluSp SINE Alu 27 295 -18 207 139 0 0 chr21 30162845 30162881 -4744689 + (A)n Simple_repeat Simple_repeat 1 36 0 2350 93 0 10 chr21 30163990 30164290 -4743280 - AluSx SINE Alu -15 297 1 374 89 0 0 chr21 30164347 30164403 -4743167 - L1PA4 LINE L1 -1 6154 6099 1470 248 83 30 chr21 30164764 30165215 -4742355 + MLT2B1 LTR ERVL 2 483 -37 378 0 0 0 chr21 30165215 30165257 -4742313 + (CA)n Simple_repeat Simple_repeat 2 43 0 1470 248 83 30 chr21 30165257 30165298 -4742272 + MLT2B1 LTR ERVL 483 520 0 247 170 80 70 chr21 30167090 30167190 -4740380 + MER5B DNA MER1_type 74 174 -4 312 306 0 0 chr21 30167585 30167758 -4739812 + (TG)n Simple_repeat Simple_repeat 2 174 0 272 241 25 25 chr21 30167776 30167855 -4739715 + (TATG)n Simple_repeat Simple_repeat 3 81 0 605 294 61 47 chr21 30168313 30168763 -4738807 + MLT1D LTR MaLR 3 486 -138 234 43 0 64 chr21 30170301 30170348 -4737222 + (TG)n Simple_repeat Simple_repeat 1 44 0 1856 176 0 19 chr21 30170702 30171015 -4736555 - AluJo SINE Alu -5 307 1 2379 104 0 0 chr21 30171027 30171325 -4736245 - AluSx SINE Alu -14 298 1 2232 113 7 0 chr21 30171543 30171843 -4735727 - AluY SINE Alu -9 302 1 32 0 0 0 chr21 30173244 30173276 -4734294 + AT_rich Low_complexity Low_complexity 1 32 0 1729 162 8 0 chr21 30173754 30174007 -4733563 + AluJo SINE Alu 1 255 -57 2067 133 20 0 chr21 30175715 30176008 -4731562 - AluSg SINE Alu -11 299 1 2151 120 0 0 chr21 30176018 30176319 -4731251 - AluSg SINE Alu -9 301 1 216 0 0 0 chr21 30177095 30177119 -4730451 + (A)n Simple_repeat Simple_repeat 1 24 0 762 159 0 38 chr21 30177534 30177666 -4729904 + FLAM_C SINE Alu 17 143 0 344 252 79 0 chr21 30177717 30177844 -4729726 + MIR SINE MIR 14 150 -112 3323 150 25 26 chr21 30178364 30178971 -4728599 - LTR36 LTR ERV1 0 611 6 2200 107 0 7 chr21 30178971 30179281 -4728289 + AluSc SINE Alu 1 308 -1 641 185 11 136 chr21 30179874 30179975 -4727595 + MER21B LTR ERV1 9 78 -785 2277 81 3 3 chr21 30179975 30180271 -4727299 - AluSc SINE Alu -13 296 1 641 185 11 136 chr21 30180271 30180353 -4727217 + MER21B LTR ERV1 78 169 -694 478 151 84 0 chr21 30180361 30180589 -4726981 + (CCA)n Simple_repeat Simple_repeat 1 247 0 2138 231 49 34 chr21 30180605 30181216 -4726354 + MER21B LTR ERV1 193 812 -51 1710 163 3 7 chr21 30182698 30182992 -4724578 + AluJb SINE Alu 3 295 -17 344 303 61 8 chr21 30183202 30183334 -4724236 - MIR SINE MIR -16 246 108 2143 101 3 0 chr21 30183408 30183734 -4723836 - AluSg SINE Alu 0 333 7 357 292 97 14 chr21 30183840 30183984 -4723586 + L1ME4a LINE L1 5955 6110 -11 1890 90 78 0 chr21 30184135 30184403 -4723167 + AluSg SINE Alu 1 289 -21 5404 142 43 11 chr21 30184415 30185147 -4722423 + L1MA8 LINE L1 4908 5615 -676 2653 146 19 21 chr21 30185147 30185358 -4722212 + Tigger2a DNA MER2_type 3 213 -2495 2186 113 3 7 chr21 30185358 30185668 -4721902 - AluSg SINE Alu 0 310 2 2175 83 3 7 chr21 30185669 30185957 -4721613 - AluSg SINE Alu -13 297 11 2653 146 19 21 chr21 30185957 30186175 -4721395 + Tigger2a DNA MER2_type 212 433 -1 5404 142 43 11 chr21 30186175 30186788 -4720782 + L1MA8 LINE L1 5615 6289 -2 2580 174 18 37 chr21 30186929 30187287 -4720283 - L1MB3 LINE L1 -2 6181 5834 2255 98 0 7 chr21 30187287 30187592 -4719978 - AluSg SINE Alu -7 303 1 2580 174 18 37 chr21 30187592 30187743 -4719827 - L1MB3 LINE L1 -349 5834 5682 235 346 24 0 chr21 30188289 30188416 -4719154 + L1ME1 LINE L1 5495 5624 -546 1189 164 67 18 chr21 30188508 30188733 -4718837 + MER46A DNA MER2_type 1 236 0 306 333 43 65 chr21 30188741 30188927 -4718643 + L1ME1 LINE L1 5722 5903 -263 293 118 20 0 chr21 30189533 30189584 -4717986 + (TAA)n Simple_repeat Simple_repeat 3 54 0 1568 160 20 33 chr21 30189636 30189936 -4717634 + AluJo SINE Alu 17 312 0 231 169 56 14 chr21 30190044 30190115 -4717455 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 1742 237 16 28 chr21 30190167 30190602 -4716968 - L1MB7 LINE L1 -41 6143 5714 1749 156 35 0 chr21 30191569 30191857 -4715713 + AluSx SINE Alu 1 298 -14 2310 78 0 31 chr21 30192781 30193102 -4714468 + AluY SINE Alu 1 311 0 2989 256 94 62 chr21 30193481 30194144 -4713426 + L1MC4a LINE L1 6233 6873 -935 1436 202 86 17 chr21 30194144 30194495 -4713075 + THE1C LTR MaLR 1 375 0 2989 256 94 62 chr21 30194495 30194827 -4712743 + L1MC4a LINE L1 6873 7193 -615 2204 137 79 17 chr21 30194827 30195230 -4712340 + MSTA LTR MaLR 1 428 0 2989 256 94 62 chr21 30195230 30195637 -4711933 + L1MC4a LINE L1 7193 7681 -127 394 132 26 0 chr21 30195639 30195715 -4711855 + CT-rich Low_complexity Low_complexity 1 78 0 2325 72 3 0 chr21 30195716 30196007 -4711563 - AluSp SINE Alu -21 292 1 362 236 221 0 chr21 30196056 30196196 -4711374 + L1MD3 LINE L1 7825 7995 0 243 319 97 28 chr21 30196928 30197144 -4710426 - L2 LINE L2 -177 3095 2865 267 31 0 0 chr21 30197421 30197453 -4710117 + (T)n Simple_repeat Simple_repeat 1 32 0 5229 53 5 2 chr21 30198059 30198700 -4708870 + L1PA6 LINE L1 5512 6154 0 269 252 111 0 chr21 30199215 30199314 -4708256 + MIR3 SINE MIR 70 179 -29 529 335 41 9 chr21 30201240 30201458 -4706112 + MIR SINE MIR 38 262 0 23 0 0 0 chr21 30202377 30202400 -4705170 + GC_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 30202513 30202547 -4705023 + GC_rich Low_complexity Low_complexity 1 34 0 189 0 0 0 chr21 30202573 30202594 -4704976 + (CGGGG)n Simple_repeat Simple_repeat 1 21 0 22 35 0 0 chr21 30202609 30202638 -4704932 + GC_rich Low_complexity Low_complexity 1 29 0 23 86 0 0 chr21 30202695 30202753 -4704817 + GC_rich Low_complexity Low_complexity 1 58 0 202 302 0 0 chr21 30202822 30202875 -4704695 + (TG)n Simple_repeat Simple_repeat 1 53 0 266 109 36 104 chr21 30203133 30203325 -4704245 + (GTGTG)n Simple_repeat Simple_repeat 1 179 0 421 168 61 24 chr21 30203328 30203793 -4703777 + (TG)n Simple_repeat Simple_repeat 1 482 0 217 190 35 17 chr21 30203805 30203863 -4703707 + (TG)n Simple_repeat Simple_repeat 1 59 0 256 69 28 69 chr21 30203868 30203940 -4703630 + (GTGTG)n Simple_repeat Simple_repeat 1 69 0 1713 44 0 40 chr21 30204394 30204619 -4702951 + AluY SINE Alu 83 298 -13 2219 112 3 6 chr21 30205100 30205413 -4702157 - AluSx SINE Alu 0 312 1 453 335 64 0 chr21 30207274 30207462 -4700108 - MIR SINE MIR -16 246 47 568 70 0 0 chr21 30208151 30208222 -4699348 - FLAM SINE Alu -18 125 55 2131 102 3 3 chr21 30208230 30208525 -4699045 - AluSc SINE Alu -14 295 1 1684 142 0 35 chr21 30208695 30208984 -4698586 + AluJo SINE Alu 22 300 -12 240 322 68 20 chr21 30209732 30209878 -4697692 - MIR SINE MIR -77 185 33 251 146 83 0 chr21 30210323 30210371 -4697199 + MADE1 DNA Mariner 28 79 -1 1371 185 117 15 chr21 30210971 30211296 -4696274 - MLT1A2 LTR MaLR 0 374 17 222 228 0 101 chr21 30211616 30211634 -4695936 - MIR SINE MIR -74 188 170 2023 74 0 0 chr21 30211634 30211890 -4695680 + AluSg SINE Alu 46 301 -9 222 228 0 101 chr21 30211890 30211950 -4695620 - MIR SINE MIR -92 170 118 845 222 11 0 chr21 30213114 30213290 -4694280 + L1MB5 LINE L1 5740 5917 -267 1050 220 25 39 chr21 30213336 30213618 -4693952 + L1MB5 LINE L1 5895 6172 -2 369 288 65 13 chr21 30215556 30215709 -4691861 + MIR SINE MIR 28 188 -74 2027 108 3 7 chr21 30216774 30217070 -4690500 - AluSx SINE Alu -14 298 4 517 263 46 33 chr21 30217696 30217848 -4689722 + MIR SINE MIR 77 230 -32 294 95 0 0 chr21 30218000 30218042 -4689528 + (TGAA)n Simple_repeat Simple_repeat 1 42 0 2306 79 0 7 chr21 30218067 30218371 -4689199 - AluY SINE Alu -9 302 1 201 39 0 0 chr21 30218663 30218689 -4688881 + (CA)n Simple_repeat Simple_repeat 1 26 0 284 190 17 0 chr21 30219305 30219363 -4688207 + MER91A DNA MER1_type 12 70 -126 2281 85 0 0 chr21 30220236 30220531 -4687039 + AluY SINE Alu 1 295 -16 1931 157 3 0 chr21 30220731 30221036 -4686534 - AluSx SINE Alu -6 306 1 380 238 40 0 chr21 30223161 30223262 -4684308 + MER5A DNA MER1_type 8 112 -77 410 281 79 14 chr21 30223619 30223758 -4683812 - L3 LINE CR1 -1229 348 201 28 0 0 47 chr21 30224761 30224781 -4682789 + AT_rich Low_complexity Low_complexity 1 20 -21 2302 82 3 0 chr21 30224781 30225087 -4682483 - AluY SINE Alu -4 307 1 28 0 0 47 chr21 30225087 30225109 -4682461 + AT_rich Low_complexity Low_complexity 20 41 0 279 238 12 0 chr21 30225317 30225397 -4682173 + MER5A DNA MER1_type 14 94 -95 372 219 65 106 chr21 30225476 30225599 -4681971 - MER5B DNA MER1_type 0 178 61 724 249 84 26 chr21 30225629 30225902 -4681668 - L1ME3A LINE L1 -9 6161 5873 277 277 36 0 chr21 30225955 30226038 -4681532 - L1ME3A LINE L1 -374 5796 5711 818 183 69 10 chr21 30226461 30226663 -4680907 - MER96B DNA MER1_type? -14 403 190 2098 122 0 0 chr21 30226897 30227193 -4680377 - AluSx SINE Alu -1 311 16 31 44 0 0 chr21 30227399 30227444 -4680126 + AT_rich Low_complexity Low_complexity 1 45 0 672 241 0 0 chr21 30227476 30227617 -4679953 + FAM SINE Alu 1 44 -5 410 314 43 58 chr21 30227757 30228152 -4679418 - L1MEd LINE L1 -5021 1098 710 2488 210 33 8 chr21 30228270 30228761 -4678809 - MER68 LTR ERV1 0 562 60 922 178 59 98 chr21 30229296 30229582 -4677988 - ORSL DNA AcHobo 0 275 1 21 0 0 0 chr21 30229591 30229612 -4677958 + AT_rich Low_complexity Low_complexity 1 21 0 491 317 21 0 chr21 30230714 30230856 -4676714 + MER69 DNA AcHobo 169 313 -913 2378 262 57 29 chr21 30231161 30232121 -4675449 + L1MEc LINE L1 253 1239 -5157 899 262 73 17 chr21 30232129 30232624 -4674946 + L1MEc LINE L1 1361 1928 -4468 2333 222 48 56 chr21 30232614 30233414 -4674156 + L1MC4 LINE L1 6830 7622 -420 224 125 0 54 chr21 30234557 30234613 -4672957 + (A)n Simple_repeat Simple_repeat 1 53 0 24 0 0 0 chr21 30234663 30234687 -4672883 + AT_rich Low_complexity Low_complexity 1 24 0 27 62 0 0 chr21 30237304 30237352 -4670218 + AT_rich Low_complexity Low_complexity 1 48 0 1001 147 6 0 chr21 30243151 30243308 -4664262 - AluJo SINE Alu -7 295 138 2388 128 22 6 chr21 30243308 30243666 -4663904 + THE1B LTR MaLR 1 364 0 11712 93 5 15 chr21 30243666 30245262 -4662308 + THE1B-int LTR MaLR 1 1580 0 2111 162 14 8 chr21 30245262 30245621 -4661949 + THE1B LTR MaLR 1 361 -3 877 150 0 0 chr21 30245639 30245772 -4661798 - AluJo SINE Alu -169 133 1 2189 122 0 0 chr21 30245845 30246156 -4661414 + AluSx SINE Alu 2 312 0 2087 118 3 0 chr21 30246737 30247041 -4660529 - AluSx SINE Alu -7 305 1 704 228 22 69 chr21 30247799 30248031 -4659539 - MER112 DNA MER1_type -39 221 1 451 204 11 11 chr21 30248044 30248137 -4659433 + MIR SINE MIR 106 198 -64 1039 275 105 23 chr21 30248312 30248806 -4658764 - L2 LINE L2 -424 2890 2324 661 233 38 6 chr21 30248812 30248971 -4658599 + LTR16C LTR ERVL 328 491 0 986 230 52 16 chr21 30249517 30249769 -4657801 - MIR SINE MIR 0 262 2 418 257 48 14 chr21 30249780 30249925 -4657645 - MIR SINE MIR -70 192 45 229 308 99 0 chr21 30249921 30250012 -4657558 - L2 LINE L2 -30 3283 3184 864 246 45 0 chr21 30250252 30250472 -4657098 - MIR SINE MIR 0 262 33 469 308 52 17 chr21 30251583 30251755 -4655815 + MIR SINE MIR 31 208 -54 200 397 81 11 chr21 30251835 30252009 -4655561 - L2 LINE L2 -30 3242 3057 1096 143 37 21 chr21 30252132 30252321 -4655249 + MER46A DNA MER2_type 44 235 -1 2108 84 10 51 chr21 30252555 30252866 -4654704 - AluSx SINE Alu -14 298 1 234 356 40 20 chr21 30254280 30254381 -4653189 - L2 LINE L2 -2 3270 3168 22 0 0 0 chr21 30254573 30254595 -4652975 + AT_rich Low_complexity Low_complexity 1 22 0 2230 77 0 42 chr21 30254683 30254995 -4652575 + AluSq SINE Alu 1 299 -14 1929 174 39 29 chr21 30255205 30255589 -4651981 + MLT1B LTR MaLR 3 390 0 257 351 73 47 chr21 30255857 30256307 -4651263 + L2 LINE L2 2708 3232 -40 1738 95 11 109 chr21 30256774 30257121 -4650449 + AluSq SINE Alu 1 313 0 181 200 29 0 chr21 30257244 30257279 -4650291 + L2 LINE L2 3156 3191 -81 26 0 0 0 chr21 30258354 30258380 -4649190 + GC_rich Low_complexity Low_complexity 1 26 0 40 79 0 0 chr21 30258972 30259061 -4648509 + GC_rich Low_complexity Low_complexity 1 89 0 1632 166 14 0 chr21 30260257 30260553 -4647017 - AluJb SINE Alu -12 300 1 207 229 0 0 chr21 30260874 30260909 -4646661 + L2 LINE L2 1847 1881 -1433 375 186 221 0 chr21 30261848 30261961 -4645609 - MLT1C LTR MaLR -153 314 177 994 219 122 86 chr21 30263155 30263433 -4644137 - MLT1D LTR MaLR -3 502 177 257 0 0 29 chr21 30263449 30263483 -4644087 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 801 188 7 0 chr21 30263491 30263629 -4643941 - FRAM SINE Alu -37 139 1 842 206 32 16 chr21 30263634 30263823 -4643747 - MLT1D LTR MaLR -313 192 1 2060 135 3 0 chr21 30266020 30266331 -4641239 - AluJo SINE Alu 0 312 1 236 333 14 0 chr21 30268238 30268310 -4639260 + L2 LINE L2 1884 1956 -1358 281 238 48 0 chr21 30268358 30268421 -4639149 - L2 LINE L2 -61 3252 3187 2062 218 103 0 chr21 30269399 30269885 -4637685 + L1MB1 LINE L1 5633 6168 0 305 179 0 15 chr21 30270553 30270620 -4636950 + MER54A LTR ERVL 1 66 -835 675 226 58 21 chr21 30270951 30271191 -4636379 + MLT1C LTR MaLR 1 250 -140 633 250 0 7 chr21 30271249 30271389 -4636181 + MLT1C LTR MaLR 252 390 0 392 317 14 6 chr21 30271391 30271425 -4636145 + MIR SINE MIR 2 34 -174 1835 125 17 3 chr21 30271425 30271713 -4635857 + AluJo SINE Alu 3 294 -18 392 317 14 6 chr21 30271713 30271844 -4635726 + MIR SINE MIR 34 172 -36 1433 236 66 40 chr21 30272112 30272565 -4635005 - MLT1C LTR MaLR -2 465 1 1945 204 27 27 chr21 30273482 30273517 -4634053 - MLT2D LTR ERVL -2 412 378 378 0 0 0 chr21 30273517 30273559 -4634011 + (TG)n Simple_repeat Simple_repeat 1 42 0 1945 204 27 27 chr21 30273559 30273934 -4633636 - MLT2D LTR ERVL -35 379 2 2086 194 95 6 chr21 30274380 30274876 -4632694 - MER54A LTR ERVL -35 866 327 357 115 49 0 chr21 30274891 30274952 -4632618 - MER54A LTR ERVL -831 70 7 351 147 52 0 chr21 30274971 30275087 -4632483 + (TG)n Simple_repeat Simple_repeat 1 122 0 619 78 52 26 chr21 30275383 30275660 -4631910 + (TG)n Simple_repeat Simple_repeat 1 284 0 665 75 52 23 chr21 30275695 30275869 -4631701 + (TG)n Simple_repeat Simple_repeat 2 180 0 482 107 71 6 chr21 30275891 30276060 -4631510 + (TG)n Simple_repeat Simple_repeat 1 180 0 224 67 67 27 chr21 30276078 30276153 -4631417 + (TG)n Simple_repeat Simple_repeat 1 78 0 282 134 67 8 chr21 30276184 30276303 -4631267 + (TG)n Simple_repeat Simple_repeat 1 126 0 2254 160 26 5 chr21 30278544 30278926 -4628644 + MLT1B LTR MaLR 1 390 0 938 275 70 64 chr21 30279252 30279753 -4627817 + MLT1J LTR MaLR 1 504 -7 2285 101 0 3 chr21 30281081 30281389 -4626181 - AluSq SINE Alu -6 307 1 24 0 0 0 chr21 30281400 30281424 -4626146 + AT_rich Low_complexity Low_complexity 1 24 0 286 283 30 0 chr21 30281523 30281622 -4625948 + MER5B DNA MER1_type 8 109 -69 2146 125 0 0 chr21 30282141 30282452 -4625118 + AluSx SINE Alu 1 311 -1 2333 75 3 3 chr21 30282586 30282892 -4624678 - AluY SINE Alu -5 306 1 1128 156 14 38 chr21 30283713 30283925 -4623645 - THE1B LTR MaLR 0 364 158 1911 147 0 0 chr21 30283925 30284211 -4623359 + AluSx SINE Alu 1 286 -26 1430 133 0 9 chr21 30284211 30284436 -4623134 + AluSg/x SINE Alu 75 297 -13 1150 81 31 12 chr21 30284436 30284597 -4622973 - THE1B LTR MaLR -200 164 1 1257 203 45 57 chr21 30284970 30285130 -4622440 + L1MB8 LINE L1 5715 5875 -303 7298 65 2 0 chr21 30285130 30286126 -4621444 + L1PA8 LINE L1 5170 6167 -5 1257 203 45 57 chr21 30286126 30286459 -4621111 + L1MB8 LINE L1 5875 6176 -2 1680 187 91 51 chr21 30287289 30287702 -4619868 + MLT1D LTR MaLR 1 437 -68 2235 170 14 8 chr21 30287702 30288061 -4619509 - MLT1A1 LTR MaLR -4 361 1 1680 187 91 51 chr21 30288061 30288133 -4619437 + MLT1D LTR MaLR 437 505 0 1745 139 26 0 chr21 30290880 30291173 -4616397 - AluJb SINE Alu 0 311 12 1872 124 0 4 chr21 30293200 30293499 -4614071 - AluSx SINE Alu 0 309 12 298 226 0 0 chr21 30294001 30294063 -4613507 - AluJo SINE Alu -6 296 235 204 111 0 0 chr21 30294063 30294099 -4613471 + (T)n Simple_repeat Simple_repeat 1 36 0 892 124 0 0 chr21 30294103 30294232 -4613338 - AluSq/x SINE Alu -180 133 5 203 156 44 0 chr21 30294984 30295029 -4612541 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1515 213 35 3 chr21 30295030 30295345 -4612225 - MSTB1 LTR MaLR -66 366 42 1376 158 4 4 chr21 30295367 30295595 -4611975 - AluJo SINE Alu -84 228 1 341 98 20 0 chr21 30295597 30295648 -4611922 - MSTB1 LTR MaLR -378 54 3 1902 104 70 0 chr21 30296093 30296363 -4611207 + AluSg SINE Alu 1 289 -21 1586 143 21 73 chr21 30297383 30297712 -4609858 + AluJo SINE Alu 1 312 0 427 198 99 0 chr21 30297814 30297905 -4609665 - MER5A DNA MER1_type -80 109 10 386 196 13 72 chr21 30299336 30299489 -4608081 - L1MC4 LINE L1 -5 8037 7894 234 260 0 0 chr21 30299532 30299605 -4607965 + (TATG)n Simple_repeat Simple_repeat 4 76 0 330 214 14 77 chr21 30299606 30299731 -4607839 + L1MC4 LINE L1 1996 6983 -1339 2269 155 0 0 chr21 30300763 30301117 -4606453 - L1PB1 LINE L1 -4 6147 5794 2113 218 96 23 chr21 30301367 30302013 -4605557 - L1ME2 LINE L1 -10 6154 5462 1647 169 0 51 chr21 30302248 30302562 -4605008 - AluJb SINE Alu -14 298 1 184 244 186 58 chr21 30302716 30302802 -4604768 - MIR3 SINE MIR -46 162 66 488 194 139 7 chr21 30305284 30305428 -4602142 - MLT1C LTR MaLR -295 172 10 287 265 29 0 chr21 30306767 30306835 -4600735 - L2 LINE L2 -7 3265 3196 1778 156 0 25 chr21 30306856 30307176 -4600394 - AluJb SINE Alu 0 312 1 894 138 26 0 chr21 30309121 30309273 -4598297 + AluJb SINE Alu 149 304 -8 469 113 0 0 chr21 30309309 30309371 -4598199 + AluJ/FLAM SINE Alu 2 63 -249 1120 208 42 101 chr21 30309406 30309814 -4597756 - MLT1B LTR MaLR 0 390 7 647 230 113 36 chr21 30311485 30311825 -4595745 - MLT1C LTR MaLR -114 391 16 238 250 0 42 chr21 30311966 30312038 -4595532 + MER5B DNA MER1_type 74 142 -36 789 209 118 103 chr21 30312758 30313095 -4594475 + MLT2B1 LTR ERVL 104 449 -71 2160 119 3 0 chr21 30313095 30313406 -4594164 - AluSq SINE Alu -1 312 1 789 209 118 103 chr21 30313406 30313475 -4594095 + MLT2B1 LTR ERVL 449 516 -4 2020 125 13 0 chr21 30314077 30314382 -4593188 - AluSg SINE Alu -1 309 1 192 304 0 0 chr21 30314649 30314695 -4592875 - L3 LINE CR1 -14 1563 1518 1938 109 0 11 chr21 30314827 30315102 -4592468 - AluSx SINE Alu -6 306 35 2065 182 35 21 chr21 30315118 30315515 -4592055 + MER67C LTR ERV1 273 678 -32 2264 98 3 0 chr21 30315515 30315821 -4591749 - AluSg1 SINE Alu -2 307 1 2065 182 35 21 chr21 30315821 30315852 -4591718 + MER67C LTR ERV1 678 707 -3 205 316 32 21 chr21 30316953 30317048 -4590522 + L3 LINE CR1 1481 1576 -1 532 277 0 17 chr21 30317273 30317450 -4590120 + (TG)n Simple_repeat Simple_repeat 1 174 0 363 73 0 0 chr21 30317768 30317823 -4589747 + (CA)n Simple_repeat Simple_repeat 2 56 0 292 253 80 0 chr21 30318134 30318209 -4589361 + MIR SINE MIR 108 188 -74 314 211 116 21 chr21 30320216 30320311 -4587259 - MER5A DNA MER1_type -80 109 6 1100 184 0 22 chr21 30320393 30320648 -4586922 + AluJb SINE Alu 81 303 -9 182 250 54 0 chr21 30320650 30320706 -4586864 - MIR SINE MIR -141 121 63 288 170 0 0 chr21 30321558 30321611 -4585959 + (TG)n Simple_repeat Simple_repeat 1 53 0 1626 196 92 5 chr21 30322594 30323008 -4584562 - MLT1C LTR MaLR -12 455 6 1996 92 0 76 chr21 30323283 30323441 -4584129 - AluSx SINE Alu -20 292 168 2235 77 10 16 chr21 30323441 30323752 -4583818 - AluY SINE Alu -2 309 1 1996 92 0 76 chr21 30323752 30323909 -4583661 - AluSx SINE Alu -144 168 1 664 238 101 0 chr21 30324912 30325080 -4582490 - MER5A DNA MER1_type -4 185 1 498 302 7 0 chr21 30325096 30325235 -4582335 - MER5B DNA MER1_type -35 143 4 585 0 0 0 chr21 30325553 30325618 -4581952 + (TG)n Simple_repeat Simple_repeat 1 65 0 4325 40 55 0 chr21 30325844 30326373 -4581197 - LTR6B LTR ERV1 0 558 1 22 35 0 0 chr21 30329152 30329181 -4578389 + AT_rich Low_complexity Low_complexity 1 29 0 434 359 27 8 chr21 30329339 30329601 -4577969 - L1ME4a LINE L1 -225 5896 5630 776 244 58 0 chr21 30330173 30330398 -4577172 - L1MD3 LINE L1 -2 7993 7756 495 304 87 11 chr21 30331735 30332021 -4575549 + L2 LINE L2 2303 2610 -704 278 272 272 0 chr21 30332179 30332282 -4575288 + L2 LINE L2 3125 3255 -17 243 0 0 0 chr21 30332282 30332309 -4575261 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 37 52 0 0 chr21 30333271 30333329 -4574241 + AT_rich Low_complexity Low_complexity 1 58 0 254 217 36 12 chr21 30333377 30333460 -4574110 + (TTATA)n Simple_repeat Simple_repeat 4 88 0 373 189 94 0 chr21 30334421 30334527 -4573043 - MER20 DNA MER1_type -80 139 24 493 206 19 0 chr21 30334736 30334843 -4572727 + MER45A DNA AcHobo 39 147 -31 656 249 76 25 chr21 30335110 30335235 -4572335 + MIR SINE MIR 19 159 -103 2208 109 0 3 chr21 30335235 30335547 -4572023 + AluSx SINE Alu 1 311 -1 656 249 76 25 chr21 30335547 30335618 -4571952 + MIR SINE MIR 159 225 -37 2110 148 49 39 chr21 30336252 30336638 -4570932 - MLT1B LTR MaLR 0 390 1 231 180 115 0 chr21 30336745 30336806 -4570764 + MIR SINE MIR 83 150 -58 554 227 62 8 chr21 30337589 30337717 -4569853 - MER58B DNA MER1_type 0 341 207 1367 268 24 12 chr21 30337980 30338402 -4569168 - MER90 LTR ERV1 0 614 188 3241 114 6 2 chr21 30339031 30339538 -4568032 + MER75 DNA T2_type 6 514 0 190 349 0 0 chr21 30339702 30339768 -4567802 - L2 LINE L2 -36 3236 3171 258 372 61 0 chr21 30340098 30340262 -4567308 - L2 LINE L2 -747 2567 2394 21 0 0 0 chr21 30341740 30341761 -4565809 + AT_rich Low_complexity Low_complexity 1 21 0 1392 175 36 55 chr21 30341761 30342070 -4565500 - AluJb SINE Alu -9 303 1 206 289 29 77 chr21 30343099 30343203 -4564367 + L3 LINE CR1 1083 1181 -396 180 305 122 0 chr21 30343301 30343383 -4564187 + L3 LINE CR1 1335 1426 -151 1424 208 30 95 chr21 30343392 30343641 -4563929 - MLT1D LTR MaLR 0 481 307 2021 157 0 0 chr21 30343641 30343946 -4563624 - AluJo SINE Alu -7 305 1 1424 208 30 95 chr21 30343946 30344234 -4563336 - MLT1D LTR MaLR -174 307 2 443 329 35 29 chr21 30344269 30344439 -4563131 + MIR SINE MIR 65 235 -27 210 398 19 9 chr21 30344552 30344660 -4562910 + L2 LINE L2 3185 3293 -20 183 42 0 0 chr21 30346067 30346091 -4561479 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 2336 70 3 3 chr21 30347038 30347336 -4560234 + AluSg SINE Alu 1 298 -12 1575 157 0 0 chr21 30348238 30348474 -4559096 - AluJb SINE Alu -18 294 59 428 169 51 51 chr21 30349294 30349472 -4558098 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 319 318 19 0 chr21 30350230 30350337 -4557233 + MER81 DNA DNA 5 113 -1 2684 195 35 12 chr21 30351309 30351816 -4555754 - LTR40a LTR ERVL 0 519 1 2453 86 0 0 chr21 30352988 30353301 -4554269 - AluSq SINE Alu 0 313 1 452 198 178 89 chr21 30353995 30354242 -4553328 + MLT1C LTR MaLR 1 269 -198 554 323 21 5 chr21 30355297 30355486 -4552084 + MIR SINE MIR 34 225 -37 685 195 31 74 chr21 30358330 30358587 -4548983 - ORSL DNA AcHobo -27 248 3 220 266 47 31 chr21 30363688 30363752 -4543818 + L2 LINE L2 3206 3270 -2 249 263 13 13 chr21 30364003 30364079 -4543491 - MER94 DNA DNA -6 128 53 1742 151 0 60 chr21 30364604 30364921 -4542649 + AluSx SINE Alu 1 298 -14 1816 188 63 22 chr21 30365194 30365345 -4542225 - L1MB7 LINE L1 -21 6163 6020 2192 117 0 0 chr21 30365345 30365645 -4541925 + AluSx SINE Alu 1 300 -12 1816 188 63 22 chr21 30365645 30365939 -4541631 - L1MB7 LINE L1 -164 6020 5700 588 327 22 11 chr21 30368739 30369017 -4538553 + L1ME LINE L1 5492 5772 -349 295 164 0 27 chr21 30369900 30369973 -4537597 + (TG)n Simple_repeat Simple_repeat 2 72 0 202 307 36 64 chr21 30370324 30370464 -4537106 - L2 LINE L2 -170 3102 2967 663 217 0 0 chr21 30371085 30371242 -4536328 + (TG)n Simple_repeat Simple_repeat 2 158 0 474 253 3 0 chr21 30372032 30372362 -4535208 + (TG)n Simple_repeat Simple_repeat 1 331 0 29 0 0 0 chr21 30376711 30376740 -4530830 + AT_rich Low_complexity Low_complexity 1 29 0 1689 200 135 19 chr21 30377399 30377814 -4529756 - MLT1C LTR MaLR 0 467 5 521 321 54 0 chr21 30378490 30378658 -4528912 - MIR SINE MIR -4 258 82 240 35 0 0 chr21 30378773 30378802 -4528768 + (TG)n Simple_repeat Simple_repeat 1 29 0 745 244 46 29 chr21 30379033 30379271 -4528299 + MLT1J LTR MaLR 7 248 -263 2211 86 7 20 chr21 30379361 30379662 -4527908 - AluY SINE Alu -12 299 3 367 237 0 21 chr21 30379672 30379769 -4527801 + MLT1J LTR MaLR 414 508 -3 294 244 70 52 chr21 30380220 30380335 -4527235 + MER5B DNA MER1_type 1 117 -61 826 147 25 17 chr21 30380641 30380879 -4526691 + (TCCA)n Simple_repeat Simple_repeat 1 239 0 756 135 25 14 chr21 30380892 30381178 -4526392 + (TCCA)n Simple_repeat Simple_repeat 1 289 0 195 152 0 0 chr21 30381244 30381277 -4526293 + MIR SINE MIR 158 190 -72 495 287 15 0 chr21 30381316 30381452 -4526118 + MIR SINE MIR 34 171 -91 260 270 42 77 chr21 30381844 30381989 -4525581 - MIR SINE MIR -55 153 18 843 251 48 6 chr21 30382071 30382435 -4525135 - MLT1C LTR MaLR -21 446 34 1755 121 0 12 chr21 30382440 30382736 -4524834 - AluSc SINE Alu 0 327 35 30 27 0 0 chr21 30383134 30383171 -4524399 + AT_rich Low_complexity Low_complexity 1 37 0 1998 99 0 40 chr21 30383171 30383474 -4524096 - AluSc SINE Alu -17 292 2 1054 54 8 0 chr21 30383476 30383605 -4523965 - L1PA8 LINE L1 -7 6165 6036 1160 298 35 21 chr21 30384756 30385240 -4522330 - L1MB5 LINE L1 -4 6170 5680 2257 107 0 0 chr21 30385298 30385607 -4521963 - AluSc SINE Alu 0 309 1 295 241 21 48 chr21 30386192 30386337 -4521233 + (GGGTG)n Simple_repeat Simple_repeat 4 144 0 434 279 37 22 chr21 30386642 30386778 -4520792 + MIR SINE MIR 55 192 -70 2311 84 3 0 chr21 30387130 30387426 -4520144 - AluSp SINE Alu -16 297 1 1619 173 42 0 chr21 30387454 30387737 -4519833 + AluJb SINE Alu 18 312 0 1629 134 76 6 chr21 30387790 30388104 -4519466 - MSTA LTR MaLR -92 336 1 219 303 115 8 chr21 30388500 30388622 -4518948 + MIR3 SINE MIR 8 142 -66 224 296 34 45 chr21 30388990 30389078 -4518492 - MIR SINE MIR -168 94 8 219 303 115 8 chr21 30389677 30389799 -4517771 - MIR3 SINE MIR -66 142 8 203 341 127 17 chr21 30391298 30391471 -4516099 - MIR SINE MIR -41 221 30 2277 98 0 0 chr21 30392096 30392392 -4515178 - AluSq SINE Alu -17 296 1 416 328 16 0 chr21 30392487 30392615 -4514955 - L2 LINE L2 -1 3312 3183 654 234 0 0 chr21 30392729 30392904 -4514666 + (TCCA)n Simple_repeat Simple_repeat 1 175 0 914 148 0 11 chr21 30392920 30393102 -4514468 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 228 259 37 0 chr21 30393528 30393582 -4513988 - MER91C DNA MER1_type -63 77 22 317 162 38 12 chr21 30396545 30396625 -4510945 - MER51B LTR ERV1 -18 359 278 427 266 90 43 chr21 30396617 30396850 -4510720 - MER51A LTR ERV1 -62 572 329 202 260 123 10 chr21 30397080 30397188 -4510382 + MIR SINE MIR 16 138 -70 2098 82 3 27 chr21 30397536 30397880 -4509690 + AluSg SINE Alu 1 310 0 202 296 138 2 chr21 30398580 30398700 -4508870 - MIR SINE MIR -58 150 41 297 368 92 0 chr21 30402229 30402381 -4505189 - MIR SINE MIR -10 252 87 2281 228 69 26 chr21 30402819 30403399 -4504171 - MER77 LTR ERV1 0 605 1 643 249 140 0 chr21 30404231 30404424 -4503146 + MER77 LTR ERV1 355 574 -31 2212 110 0 0 chr21 30404839 30405140 -4502430 + AluSx SINE Alu 2 302 -10 297 352 63 21 chr21 30405875 30406017 -4501553 - MIR SINE MIR 0 262 115 1315 230 49 47 chr21 30406143 30406609 -4500961 - MLT1D LTR MaLR -5 500 34 995 250 40 25 chr21 30406865 30407189 -4500381 - MER63 DNA MER1_type -179 882 554 1084 200 47 0 chr21 30407203 30407438 -4500132 - MER63 DNA MER1_type -815 246 1 317 304 58 93 chr21 30407438 30407889 -4499681 + L2 LINE L2 2837 3271 -1 602 196 3 3 chr21 30409635 30409692 -4497878 + (CA)n Simple_repeat Simple_repeat 1 57 -614 2203 121 3 0 chr21 30409692 30409997 -4497573 + AluSx SINE Alu 1 306 -6 602 196 3 3 chr21 30409997 30410306 -4497264 + (CA)n Simple_repeat Simple_repeat 56 671 0 463 71 0 0 chr21 30412495 30412565 -4495005 + Alu SINE Alu 240 309 -1 241 236 83 0 chr21 30412579 30412651 -4494919 - L1MD2 LINE L1 -47 6312 6235 2242 97 0 0 chr21 30413881 30414180 -4493390 + AluSx SINE Alu 1 299 -13 2021 81 0 7 chr21 30414332 30414605 -4492965 + AluSq SINE Alu 1 271 -42 418 216 26 113 chr21 30415319 30415399 -4492171 - L1MC4 LINE L1 -1 8041 7956 1181 248 32 41 chr21 30415399 30415742 -4491828 + MER58B DNA MER1_type 1 340 -1 418 216 26 113 chr21 30415742 30415855 -4491715 - L1MC4 LINE L1 -86 7956 7865 22 35 0 0 chr21 30415917 30415946 -4491624 + AT_rich Low_complexity Low_complexity 1 29 0 747 281 71 9 chr21 30415983 30416557 -4491013 - L1ME2 LINE L1 -100 6133 5466 2156 78 28 0 chr21 30416612 30416894 -4490676 + AluSx SINE Alu 14 303 -9 297 197 0 66 chr21 30417095 30417171 -4490399 - L1MB8 LINE L1 -1 6177 6107 1357 203 83 31 chr21 30417169 30417518 -4490052 - L1ME2 LINE L1 -1166 5049 4683 4676 244 20 31 chr21 30417529 30419120 -4488450 - L1ME2 LINE L1 -2544 3671 2137 671 209 28 102 chr21 30419167 30419450 -4488120 - L1ME2 LINE L1 -4249 2147 1886 2155 107 3 0 chr21 30420680 30420988 -4486582 - AluSq SINE Alu -4 309 1 428 286 107 0 chr21 30422884 30423024 -4484546 - MLT1K LTR MaLR -332 256 102 2134 129 7 0 chr21 30423382 30423736 -4483834 + AluSx SINE Alu 1 356 0 2306 93 0 0 chr21 30425109 30425411 -4482159 - AluSq SINE Alu -11 302 1 180 0 0 0 chr21 30425688 30425708 -4481862 + (T)n Simple_repeat Simple_repeat 1 20 0 546 276 62 23 chr21 30426091 30426348 -4481222 - L1MB8 LINE L1 -592 5572 5315 1558 173 14 0 chr21 30426357 30426664 -4480906 - AluJo SINE Alu 0 311 1 468 289 113 38 chr21 30427406 30427449 -4480121 - L1MB8 LINE L1 -3235 2911 2873 1980 103 51 0 chr21 30427449 30427741 -4479829 - AluSx SINE Alu -5 307 1 468 289 113 38 chr21 30427741 30427936 -4479634 - L1MB8 LINE L1 -3273 2873 2655 464 302 49 30 chr21 30428155 30428396 -4479174 - L1M4 LINE L1 -2981 3165 2930 7633 40 12 0 chr21 30428396 30429590 -4477980 - L1PA8 LINE L1 -2 6170 4976 464 302 49 30 chr21 30429590 30429815 -4477755 - L1M4 LINE L1 -3216 2930 2690 2143 107 0 3 chr21 30430785 30431076 -4476494 + AluSx SINE Alu 1 290 -22 386 109 63 29 chr21 30431935 30432109 -4475461 + (TG)n Simple_repeat Simple_repeat 1 180 0 420 88 86 17 chr21 30432170 30432469 -4475101 + (TG)n Simple_repeat Simple_repeat 1 319 0 573 128 67 12 chr21 30432491 30432917 -4474653 + (TG)n Simple_repeat Simple_repeat 1 449 0 677 301 61 7 chr21 30433255 30433551 -4474019 - MER63B DNA MER1_type -124 312 1 2467 61 0 3 chr21 30433677 30433988 -4473582 + AluY SINE Alu 1 310 -1 308 243 53 59 chr21 30434247 30434399 -4473171 + L1ME4a LINE L1 5717 5867 -254 186 71 0 0 chr21 30434467 30434495 -4473075 + (CA)n Simple_repeat Simple_repeat 1 28 0 527 128 0 64 chr21 30434537 30434558 -4473012 - MLT1A2 LTR MaLR 0 374 353 2249 107 92 15 chr21 30434558 30434896 -4472674 + THE1B LTR MaLR 1 364 0 527 128 0 64 chr21 30434896 30434968 -4472602 - MLT1A2 LTR MaLR -21 353 287 2908 222 14 6 chr21 30434968 30435589 -4471981 - MLT1B-int LTR MaLR -1109 626 1 398 277 74 43 chr21 30435617 30435848 -4471722 - MLT1B LTR MaLR -39 351 114 361 302 50 0 chr21 30436449 30436568 -4471002 + MIR SINE MIR 23 147 -115 237 135 58 19 chr21 30436584 30436636 -4470934 - MER81 DNA DNA -32 82 29 274 132 15 15 chr21 30437118 30437186 -4470384 + (TCTA)n Simple_repeat Simple_repeat 2 69 0 2070 125 0 7 chr21 30437686 30437989 -4469581 + AluSx SINE Alu 1 301 -11 229 209 128 12 chr21 30438508 30438594 -4468976 - MER117 DNA MER1_type 0 197 102 188 179 0 0 chr21 30442391 30442430 -4465140 - MER5B DNA MER1_type -134 44 6 2179 112 0 0 chr21 30442639 30442950 -4464620 + AluY SINE Alu 1 311 0 515 374 32 7 chr21 30444272 30444553 -4463017 + L1ME3 LINE L1 714 1001 -5069 373 264 42 60 chr21 30444639 30444806 -4462764 + L1ME3 LINE L1 978 1141 -4941 1122 218 29 13 chr21 30444846 30445153 -4462417 + L1ME3 LINE L1 2771 3082 -2998 1767 253 62 72 chr21 30445151 30445354 -4462216 + L1ME3 LINE L1 4206 4409 -1671 1827 126 27 7 chr21 30445354 30445647 -4461923 + AluJb SINE Alu 1 299 -13 1767 253 62 72 chr21 30445647 30446373 -4461197 + L1ME3 LINE L1 4409 5126 -954 2207 112 0 0 chr21 30446373 30446685 -4460885 + AluSx SINE Alu 1 312 0 1767 253 62 72 chr21 30446685 30446817 -4460753 + L1ME3 LINE L1 5126 5258 -822 1266 270 23 25 chr21 30446824 30447225 -4460345 + L1P1 LINE L1 5398 5798 -357 1065 254 39 0 chr21 30447207 30447514 -4460056 + L1ME3 LINE L1 5750 6068 -28 527 258 98 6 chr21 30447541 30447704 -4459866 + MIR SINE MIR 20 197 -65 741 138 0 32 chr21 30449025 30449148 -4458422 - Charlie3 DNA MER1_type -8 2702 2584 2045 116 14 0 chr21 30449148 30449440 -4458130 - AluSx SINE Alu -16 296 1 962 78 28 7 chr21 30449477 30449618 -4457952 - L1PA10 LINE L1 0 6168 6025 2458 103 5 31 chr21 30449620 30450047 -4457523 - Charlie3 DNA MER1_type -94 2616 6 377 245 21 0 chr21 30450180 30450274 -4457296 - L2 LINE L2 -10 3303 3208 1915 141 0 3 chr21 30451165 30451462 -4456108 - AluJb SINE Alu -14 298 3 608 228 132 18 chr21 30451492 30451711 -4455859 + L1M4 LINE L1 4763 5006 -1140 622 278 0 5 chr21 30451725 30451912 -4455658 - L1MDa LINE L1 -857 5683 5498 4409 245 42 9 chr21 30451977 30453247 -4454323 - L1MDa LINE L1 -1140 5400 4089 689 160 0 0 chr21 30453253 30453359 -4454211 - FAM SINE Alu -36 149 44 2912 239 36 66 chr21 30453368 30453868 -4453702 - L1MDa LINE L1 -2445 4095 3582 2130 129 3 0 chr21 30453868 30454179 -4453391 + AluSx SINE Alu 1 312 0 2912 239 36 66 chr21 30454179 30454629 -4452941 - L1MDa LINE L1 -2958 3582 3181 1821 131 33 0 chr21 30454629 30454954 -4452616 + AluSx SINE Alu 2 335 0 2912 239 36 66 chr21 30454954 30455138 -4452432 - L1MDa LINE L1 -3359 3181 2993 843 173 0 7 chr21 30455138 30455277 -4452293 - AluJo SINE Alu -143 169 32 2524 204 81 18 chr21 30455277 30456134 -4451436 - L1MDa LINE L1 -4481 2059 1120 2840 222 32 46 chr21 30456145 30457042 -4450528 - L1MDa LINE L1 -5541 999 25 279 286 12 0 chr21 30458183 30458267 -4449303 - MLT1K LTR MaLR -5 583 499 334 304 70 53 chr21 30458274 30458445 -4449125 - MIR SINE MIR 0 262 89 2131 110 0 3 chr21 30459500 30459809 -4447761 - AluSc SINE Alu -1 308 1 183 266 0 0 chr21 30459998 30460062 -4447508 + CT-rich Low_complexity Low_complexity 1 64 0 1293 184 79 89 chr21 30460062 30460149 -4447421 + MLT1A1 LTR MaLR 1 87 -278 1995 119 0 30 chr21 30460149 30460451 -4447119 + AluSx SINE Alu 1 293 -19 221 0 0 33 chr21 30460455 30460485 -4447085 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1293 184 79 89 chr21 30460485 30460761 -4446809 + MLT1A1 LTR MaLR 90 365 0 3317 248 77 65 chr21 30460761 30461257 -4446313 + MLT1A1-int LTR MaLR 1 489 -1091 2233 63 45 0 chr21 30461257 30461544 -4446026 - AluY SINE Alu -11 300 1 3317 248 77 65 chr21 30461544 30462636 -4444934 + MLT1A1-int LTR MaLR 489 1580 0 1460 204 47 41 chr21 30462636 30462999 -4444571 + MLT1A1 LTR MaLR 1 365 0 262 349 60 47 chr21 30463931 30464146 -4443424 + L3 LINE CR1 842 1059 -518 2629 112 28 11 chr21 30464465 30464823 -4442747 + THE1B LTR MaLR 1 364 0 231 143 143 0 chr21 30465278 30465327 -4442243 + MLT1K LTR MaLR 525 580 -8 2168 66 76 0 chr21 30466231 30466520 -4441050 - AluY SINE Alu 0 311 1 291 28 0 0 chr21 30467774 30467810 -4439760 + (CCG)n Simple_repeat Simple_repeat 1 36 0 482 225 54 9 chr21 30469728 30469839 -4437731 + 5S rRNA rRNA 5 120 -1 27 0 0 0 chr21 30469844 30469871 -4437699 + AT_rich Low_complexity Low_complexity 1 27 0 182 296 37 0 chr21 30471459 30471540 -4436030 + L2 LINE L2 2546 2629 -685 219 88 0 0 chr21 30472281 30472315 -4435255 + (TGAG)n Simple_repeat Simple_repeat 3 36 0 250 329 0 89 chr21 30473512 30473658 -4433912 + MIR SINE MIR 51 183 -79 1909 126 53 66 chr21 30476212 30476592 -4430978 - THE1C LTR MaLR 0 375 1 249 237 62 21 chr21 30477072 30477169 -4430401 - MIR SINE MIR -126 136 36 2149 110 0 7 chr21 30477989 30478311 -4429259 + AluSg SINE Alu 1 320 0 777 338 36 0 chr21 30481852 30482133 -4425437 - L3 LINE CR1 -2 1575 1285 2575 144 96 8 chr21 30483943 30484500 -4423070 - MER4B LTR ERV1 0 779 1 187 194 179 15 chr21 30486108 30486175 -4421395 + L2 LINE L2 3194 3271 -1 294 326 82 13 chr21 30486377 30486613 -4420957 + MIR SINE MIR 4 255 -7 302 294 73 9 chr21 30487681 30487790 -4419780 + MIR SINE MIR 2 117 -145 21 0 0 0 chr21 30487796 30487817 -4419753 + AT_rich Low_complexity Low_complexity 1 21 0 217 320 23 62 chr21 30488768 30488896 -4418674 - MIR SINE MIR -65 143 21 2162 106 10 0 chr21 30488998 30489299 -4418271 - AluSx SINE Alu -8 304 1 2123 111 0 0 chr21 30489898 30490186 -4417384 + AluSx SINE Alu 25 312 0 1731 157 31 0 chr21 30490257 30490551 -4417019 + AluJo SINE Alu 2 304 -8 1593 182 13 7 chr21 30490773 30491075 -4416495 + AluJo SINE Alu 1 304 -8 519 281 42 0 chr21 30491372 30491539 -4416031 - MER5A DNA MER1_type -15 174 1 453 36 0 0 chr21 30491987 30492042 -4415528 + (TG)n Simple_repeat Simple_repeat 1 55 0 2579 36 0 3 chr21 30492366 30492670 -4414900 - AluY SINE Alu -8 303 1 681 264 72 82 chr21 30496132 30496522 -4411048 + MLT1D LTR MaLR 1 386 -119 376 305 8 58 chr21 30497079 30497160 -4410410 + L1ME2 LINE L1 5697 5780 -384 1674 143 13 60 chr21 30497160 30497474 -4410096 + AluJb SINE Alu 4 302 -10 376 305 8 58 chr21 30497474 30497657 -4409913 + L1ME2 LINE L1 5780 5947 -217 472 224 46 151 chr21 30497923 30498182 -4409388 + MIR SINE MIR 28 259 -3 2257 91 3 0 chr21 30498275 30498571 -4408999 + AluSx SINE Alu 1 297 -15 237 355 6 27 chr21 30503823 30504006 -4403564 + (TATG)n Simple_repeat Simple_repeat 1 179 0 472 307 17 11 chr21 30503871 30504047 -4403523 + (TG)n Simple_repeat Simple_repeat 1 177 0 526 348 15 5 chr21 30505543 30505744 -4401826 - MIR SINE MIR -6 256 54 353 232 0 16 chr21 30506387 30506641 -4400929 + (TCCA)n Simple_repeat Simple_repeat 1 249 0 253 268 0 11 chr21 30506670 30506849 -4400721 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 495 189 6 18 chr21 30506851 30507020 -4400550 + CT-rich Low_complexity Low_complexity 3 169 0 195 69 0 0 chr21 30507185 30507214 -4400356 + (TCCA)n Simple_repeat Simple_repeat 4 32 0 2232 68 14 10 chr21 30509376 30509672 -4397898 - AluY SINE Alu -14 297 1 324 358 84 11 chr21 30511276 30511455 -4396115 + MIR SINE MIR 50 241 -21 186 396 38 19 chr21 30512492 30512598 -4394972 - L2 LINE L2 -13 3300 3193 1017 150 0 0 chr21 30512919 30513099 -4394471 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 303 161 25 12 chr21 30513210 30513291 -4394279 + GA-rich Low_complexity Low_complexity 2 83 0 1242 247 51 18 chr21 30513823 30514212 -4393358 + MLT1C LTR MaLR 1 402 -65 2185 100 0 0 chr21 30514571 30514889 -4392681 + AluY SINE Alu 1 318 0 299 360 53 7 chr21 30515319 30515469 -4392101 - MIR3 SINE MIR -36 172 16 418 78 33 115 chr21 30515803 30516573 -4390997 + (GTCTG)n Simple_repeat Simple_repeat 1 707 0 243 0 0 0 chr21 30516914 30516941 -4390629 + (TG)n Simple_repeat Simple_repeat 1 27 0 2386 60 17 0 chr21 30518535 30518833 -4388737 + AluY SINE Alu 1 303 -8 35 95 0 0 chr21 30519054 30519159 -4388411 + AT_rich Low_complexity Low_complexity 1 105 0 199 340 53 0 chr21 30519239 30519333 -4388237 + MIR SINE MIR 52 150 -112 2138 112 3 25 chr21 30520151 30520471 -4387099 + AluSq SINE Alu 1 313 0 186 133 0 0 chr21 30521991 30522021 -4385549 + (CCCCG)n Simple_repeat Simple_repeat 5 34 0 191 241 17 35 chr21 30522675 30522733 -4384837 + MIR3 SINE MIR 104 160 -48 2309 91 0 0 chr21 30523027 30523323 -4384247 - AluSg SINE Alu -13 297 2 203 236 113 94 chr21 30524583 30524689 -4382881 - MIR SINE MIR -70 192 85 1475 188 52 11 chr21 30526907 30527275 -4380295 + MLT1B LTR MaLR 1 383 -7 226 333 0 0 chr21 30530426 30530486 -4377084 - L2 LINE L2 0 3313 3254 1928 144 0 25 chr21 30533767 30534087 -4373483 + AluJb SINE Alu 1 312 0 303 93 0 0 chr21 30534325 30534368 -4373202 + (ATTG)n Simple_repeat Simple_repeat 4 46 0 437 205 40 37 chr21 30534765 30534911 -4372659 - MLT1C LTR MaLR -270 197 48 2042 136 3 7 chr21 30536977 30537286 -4370284 + AluSx SINE Alu 1 308 -4 230 146 42 0 chr21 30537287 30537335 -4370235 + GA-rich Low_complexity Low_complexity 1 50 0 874 129 160 11 chr21 30537347 30537651 -4369919 - MSTA LTR MaLR -27 401 1 554 307 66 31 chr21 30537700 30537987 -4369583 - MLT1I LTR MaLR -22 387 91 270 194 0 0 chr21 30538370 30538432 -4369138 + (TG)n Simple_repeat Simple_repeat 1 62 0 479 308 60 22 chr21 30540411 30540593 -4366977 - MIR SINE MIR -22 240 52 453 51 51 67 chr21 30541117 30541295 -4366275 + (CA)n Simple_repeat Simple_repeat 1 175 0 274 157 29 29 chr21 30541295 30541365 -4366205 + (CACAC)n Simple_repeat Simple_repeat 1 70 0 539 25 52 80 chr21 30541368 30541733 -4365837 + (CA)n Simple_repeat Simple_repeat 1 354 0 482 54 59 62 chr21 30541761 30542549 -4365021 + (CA)n Simple_repeat Simple_repeat 1 785 0 2259 93 0 31 chr21 30543590 30543912 -4363658 + AluSx SINE Alu 1 312 0 241 330 59 8 chr21 30546429 30546547 -4361023 + MIR3 SINE MIR 81 204 -4 204 121 30 0 chr21 30548827 30548860 -4358710 + (TG)n Simple_repeat Simple_repeat 2 35 0 618 223 0 0 chr21 30548866 30549023 -4358547 + (CA)n Simple_repeat Simple_repeat 2 158 0 22 0 0 0 chr21 30549332 30549354 -4358216 + AT_rich Low_complexity Low_complexity 1 22 0 204 158 0 0 chr21 30552646 30552684 -4354886 + (TA)n Simple_repeat Simple_repeat 2 39 0 343 362 82 10 chr21 30553148 30553355 -4354215 - MIR SINE MIR -28 234 13 2083 105 0 0 chr21 30553917 30554232 -4353338 - AluSg SINE Alu 0 319 5 191 333 37 0 chr21 30555474 30555555 -4352015 + MIR SINE MIR 56 139 -123 1260 154 31 23 chr21 30556198 30556457 -4351113 - L1MB7 LINE L1 -57 6127 5867 253 298 123 35 chr21 30559573 30559687 -4347883 + MIR SINE MIR 58 181 -81 615 188 59 71 chr21 30562870 30562923 -4344647 - MER5B DNA MER1_type -10 168 116 1960 142 14 7 chr21 30562923 30563212 -4344358 + AluSx SINE Alu 1 291 -21 615 188 59 71 chr21 30563212 30563328 -4344242 - MER5B DNA MER1_type -62 116 1 203 53 53 26 chr21 30564671 30564709 -4342861 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1790 148 36 13 chr21 30564711 30565016 -4342554 - AluJb SINE Alu 0 312 1 216 244 85 37 chr21 30566058 30566140 -4341430 - MER5B DNA MER1_type -2 176 91 257 200 36 0 chr21 30566360 30566415 -4341155 + MIR SINE MIR 80 136 -126 196 365 109 36 chr21 30567178 30567370 -4340200 - L2 LINE L2 -7 3265 3060 1864 173 0 0 chr21 30567423 30567781 -4339789 - AluSq SINE Alu 0 358 1 838 98 0 0 chr21 30567781 30567883 -4339687 - AluSq/x SINE Alu -178 135 34 452 185 102 19 chr21 30569047 30569155 -4338415 + MLT1C LTR MaLR 6 122 -345 1441 143 22 5 chr21 30569160 30569383 -4338187 - MER30 DNA MER1_type 0 230 4 863 196 49 120 chr21 30569424 30569791 -4337779 + MLT1C LTR MaLR 127 467 0 336 238 0 30 chr21 30570334 30570435 -4337135 + MER94 DNA DNA 23 120 -14 474 208 83 21 chr21 30571033 30571177 -4336393 + L1MC5 LINE L1 7707 7859 -102 4380 80 4 0 chr21 30572160 30572712 -4334858 - MER41A LTR ERV1 0 554 1 397 315 52 56 chr21 30572916 30573399 -4334171 + L1MC/D LINE L1 4487 4967 -1179 1979 237 54 71 chr21 30573851 30574709 -4332861 + L1ME1 LINE L1 333 1165 -5207 2120 129 0 29 chr21 30574709 30575019 -4332551 + AluSx SINE Alu 1 301 -11 1979 237 54 71 chr21 30575019 30575172 -4332398 + L1ME1 LINE L1 1165 1319 -5053 368 215 33 25 chr21 30575144 30575265 -4332305 + L1ME1 LINE L1 1120 1241 -5143 1238 274 57 27 chr21 30575281 30575309 -4332261 + L1M3 LINE L1 3160 3186 -2960 1948 150 13 16 chr21 30575309 30575622 -4331948 + AluSx SINE Alu 1 312 0 1238 274 57 27 chr21 30575622 30576194 -4331376 + L1M3 LINE L1 3186 3778 -2368 937 241 48 10 chr21 30576328 30576619 -4330951 + L1M3 LINE L1 3929 4230 -1916 306 210 89 40 chr21 30576605 30576729 -4330841 - L1M4 LINE L1 -1779 4367 4238 507 284 58 25 chr21 30576704 30577066 -4330504 + L1M3 LINE L1 5086 5453 -727 339 281 44 18 chr21 30577067 30577181 -4330389 + L1MC/D LINE L1 5469 5585 -2457 21 0 0 0 chr21 30577673 30577694 -4329876 + AT_rich Low_complexity Low_complexity 1 21 0 3059 79 107 5 chr21 30577884 30578325 -4329245 + LTR19A LTR ERV1 1 486 0 838 248 56 77 chr21 30580244 30580776 -4326794 - MER34 LTR ERV1 -21 521 1 2276 113 0 0 chr21 30581789 30582081 -4325489 - AluSx SINE Alu -20 292 1 224 219 0 0 chr21 30582432 30582473 -4325097 + CT-rich Low_complexity Low_complexity 2 42 0 1165 44 25 0 chr21 30582473 30582631 -4324939 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 2061 120 18 0 chr21 30582633 30582917 -4324653 - AluSq SINE Alu -24 289 1 593 320 74 77 chr21 30583065 30583543 -4324027 + L1ME1 LINE L1 2558 3044 -3338 2013 142 0 26 chr21 30583543 30583852 -4323718 + AluSx SINE Alu 1 301 -11 593 320 74 77 chr21 30583852 30584203 -4323367 + L1ME1 LINE L1 3044 3395 -2987 1618 204 15 68 chr21 30584564 30585020 -4322550 - MER101 LTR ERV1 -32 442 11 2719 235 32 37 chr21 30585154 30586366 -4321204 + L1ME1 LINE L1 5211 6570 0 404 273 35 21 chr21 30587814 30587957 -4319613 - MIR SINE MIR -37 225 81 1390 263 75 9 chr21 30588220 30588393 -4319177 - MER82 DNA MER2_type 0 653 493 1894 141 3 23 chr21 30588393 30588692 -4318878 - AluY SINE Alu -18 293 1 1390 263 75 9 chr21 30588692 30588974 -4318596 - MER82 DNA MER2_type -160 493 168 5939 169 58 15 chr21 30589177 30589424 -4318146 - Tigger3b DNA MER2_type -1797 1231 996 2266 115 7 3 chr21 30589424 30589728 -4317842 + AluSx SINE Alu 1 305 -7 5939 169 58 15 chr21 30589728 30589985 -4317585 - Tigger3b DNA MER2_type -2032 996 751 2274 123 3 0 chr21 30589985 30590294 -4317276 - AluSg SINE Alu 0 310 1 5939 169 58 15 chr21 30590294 30590969 -4316601 - Tigger3b DNA MER2_type -2277 751 1 849 83 0 0 chr21 30591081 30591189 -4316381 - AluSc SINE Alu -15 294 187 1918 128 36 4 chr21 30591303 30591628 -4315942 - AluJb SINE Alu 0 334 1 183 95 0 119 chr21 30591701 30591743 -4315827 - MER5B DNA MER1_type -109 69 33 218 304 0 52 chr21 30592036 30592171 -4315399 + GA-rich Low_complexity Low_complexity 4 131 0 2775 178 24 13 chr21 30593398 30593950 -4313620 + L1PB4 LINE L1 5597 6154 -2 2122 114 3 32 chr21 30594448 30594756 -4312814 + AluSx SINE Alu 2 300 -12 406 308 0 0 chr21 30594761 30594868 -4312702 + (CA)n Simple_repeat Simple_repeat 1 107 0 231 242 30 0 chr21 30595834 30595900 -4311670 - MARNA DNA Mariner -110 476 409 21 0 0 0 chr21 30596984 30597005 -4310565 + AT_rich Low_complexity Low_complexity 1 21 0 332 218 41 36 chr21 30597878 30598275 -4309295 + (CCTAG)n Simple_repeat Simple_repeat 1 398 0 1880 169 0 19 chr21 30598795 30599103 -4308467 + AluJb SINE Alu 1 302 -10 214 209 0 0 chr21 30601417 30601460 -4306110 + MER91 DNA MER1_type 95 137 -3 647 285 89 7 chr21 30602273 30602564 -4305006 + L1MEc LINE L1 465 779 -6046 1849 192 39 16 chr21 30602897 30603278 -4304292 - MLT1B LTR MaLR 0 390 1 442 312 28 43 chr21 30603526 30603808 -4303762 + L1MEc LINE L1 1427 1704 -5121 276 336 9 9 chr21 30603863 30603979 -4303591 + L1MEc LINE L1 1595 1710 -4832 2357 124 57 38 chr21 30604024 30604442 -4303128 + MSTC LTR MaLR 3 428 0 416 215 21 0 chr21 30604612 30604705 -4302865 + MER58B DNA MER1_type 230 324 -17 1373 147 62 0 chr21 30604709 30604920 -4302650 + AluSx SINE Alu 1 224 -88 22 0 0 0 chr21 30604950 30604972 -4302598 + AT_rich Low_complexity Low_complexity 1 22 0 1909 228 8 32 chr21 30605099 30605169 -4302401 + LTR40b LTR ERVL 1 71 -391 2635 214 22 2 chr21 30605169 30605678 -4301892 + LTR53 LTR ERVL 1 519 0 1909 228 8 32 chr21 30605678 30606080 -4301490 + LTR40b LTR ERVL 71 462 0 378 213 0 0 chr21 30607437 30607512 -4300058 + MLT1B LTR MaLR 35 109 -281 1001 191 45 0 chr21 30607515 30607714 -4299856 + MER57A LTR ERV1 1 208 -195 1408 190 14 21 chr21 30607687 30607952 -4299618 + MER57A LTR ERV1 122 387 -16 2061 110 14 0 chr21 30607952 30608297 -4299273 - AluSp SINE Alu 0 349 1 1408 190 14 21 chr21 30608297 30608314 -4299256 + MER57A LTR ERV1 387 403 0 621 181 30 48 chr21 30608314 30608476 -4299094 + MLT1B LTR MaLR 109 267 -123 1356 170 5 0 chr21 30608527 30608739 -4298831 - AluJb SINE Alu -13 299 87 2071 108 44 20 chr21 30611176 30611473 -4296097 + AluSx SINE Alu 1 304 -8 2220 108 0 3 chr21 30612387 30612673 -4294897 + AluSx SINE Alu 14 298 -14 218 234 47 0 chr21 30614819 30614883 -4292687 + MIR SINE MIR 185 251 -11 230 204 20 0 chr21 30614838 30614887 -4292683 + L2 LINE L2 3251 3300 -13 2071 118 0 21 chr21 30615584 30615871 -4291699 + AluSx SINE Alu 1 281 -31 342 342 20 64 chr21 30616718 30616920 -4290650 + L1ME LINE L1 5544 5736 -426 918 164 29 23 chr21 30617005 30617176 -4290394 + MER2 DNA MER2_type 1 172 -172 2430 92 0 0 chr21 30617276 30617569 -4290001 - AluSx SINE Alu -19 293 1 241 347 0 0 chr21 30617572 30617644 -4289926 + MER2 DNA MER2_type 273 344 0 2221 126 0 0 chr21 30620828 30621130 -4286440 + AluSx SINE Alu 1 302 -10 236 318 45 18 chr21 30622096 30622206 -4285364 + MER5A DNA MER1_type 77 189 0 863 192 23 23 chr21 30623085 30623304 -4284266 + L1MB5 LINE L1 5949 6167 -7 924 214 10 19 chr21 30623317 30623523 -4284047 - MER6B DNA MER2_type -6 204 1 1251 231 64 52 chr21 30625649 30626146 -4281424 + MLT1D LTR MaLR 3 505 0 644 194 130 81 chr21 30626886 30627231 -4280339 + MLT1C LTR MaLR 1 362 -105 183 42 0 0 chr21 30627258 30627282 -4280288 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1621 164 29 18 chr21 30627290 30627421 -4280149 - AluJo SINE Alu -34 278 150 2147 127 0 3 chr21 30627421 30627736 -4279834 - AluSx SINE Alu 0 314 1 1621 164 29 18 chr21 30627736 30627878 -4279692 - AluJo SINE Alu -162 150 1 860 156 0 0 chr21 30627878 30628013 -4279557 - AluJo SINE Alu -177 135 1 275 266 0 0 chr21 30628013 30628077 -4279493 + MLT1C LTR MaLR 439 502 -3 1850 213 77 71 chr21 30629992 30630587 -4276983 + L1MDb LINE L1 535 1133 -5276 441 145 0 0 chr21 30633573 30633649 -4273921 + (TCCC)n Simple_repeat Simple_repeat 4 79 0 278 329 0 0 chr21 30635205 30635287 -4272283 - MIR SINE MIR -98 164 83 270 0 0 0 chr21 30635328 30635358 -4272212 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 236 29 0 29 chr21 30635914 30635948 -4271622 + (TG)n Simple_repeat Simple_repeat 2 34 0 361 243 99 0 chr21 30636734 30636845 -4270725 + MIR SINE MIR 68 189 -73 1652 173 41 100 chr21 30638815 30638996 -4268574 + MLT1C LTR MaLR 1 191 -276 2310 123 0 0 chr21 30638996 30639305 -4268265 + AluSq SINE Alu 1 309 -4 1652 173 41 100 chr21 30639305 30639615 -4267955 + MLT1C LTR MaLR 191 463 -4 773 171 0 8 chr21 30639767 30639896 -4267674 - FLAM_C SINE Alu -5 128 1 2047 248 15 8 chr21 30639919 30640398 -4267172 + LTR40a LTR ERVL 35 516 -3 243 294 88 20 chr21 30640586 30640688 -4266882 - MIR SINE MIR -69 139 31 245 318 24 0 chr21 30641036 30641121 -4266449 + L2 LINE L2 3227 3313 0 251 211 35 0 chr21 30641536 30641593 -4265977 + L1ME LINE L1 5344 5402 -932 1638 100 5 5 chr21 30641595 30641815 -4265755 + AluSg/x SINE Alu 81 300 -10 377 331 16 11 chr21 30641996 30642180 -4265390 + L1ME LINE L1 5617 5801 -320 1130 196 10 19 chr21 30642221 30642430 -4265140 - MER58A DNA MER1_type -16 208 2 29 28 0 0 chr21 30642776 30642812 -4264758 + AT_rich Low_complexity Low_complexity 1 36 0 189 0 0 0 chr21 30644220 30644241 -4263329 + (A)n Simple_repeat Simple_repeat 1 21 0 541 97 0 0 chr21 30647819 30647910 -4259660 + L1MA9 LINE L1 5851 5941 -229 324 0 0 0 chr21 30647910 30647946 -4259624 + (A)n Simple_repeat Simple_repeat 1 36 0 956 234 51 33 chr21 30647946 30648279 -4259291 + L1MA9 LINE L1 5936 6274 -38 2193 82 18 4 chr21 30648287 30648604 -4258966 - AluY SINE Alu 0 321 1 2138 129 17 0 chr21 30648629 30648924 -4258646 + AluSx SINE Alu 1 300 -12 426 279 29 7 chr21 30648950 30649086 -4258484 + L1ME3 LINE L1 4031 4169 -1977 1709 224 60 30 chr21 30649088 30649818 -4257752 - L1ME LINE L1 -442 5722 4916 1610 170 43 0 chr21 30649818 30650094 -4257476 - AluJo SINE Alu -11 301 14 1709 224 60 30 chr21 30650094 30650188 -4257382 - L1ME LINE L1 -1248 4916 4826 1197 254 40 36 chr21 30650429 30651072 -4256498 + L1ME3 LINE L1 4938 5789 -389 2145 105 6 35 chr21 30651072 30651385 -4256185 - AluSx SINE Alu -8 304 1 1197 254 40 36 chr21 30651385 30651660 -4255910 + L1ME3 LINE L1 5789 6061 -117 505 121 160 146 chr21 30651661 30651867 -4255703 - MER20 DNA MER1_type 0 219 11 271 225 14 28 chr21 30651899 30651970 -4255600 + L1ME3A LINE L1 6077 6146 -24 229 125 50 0 chr21 30652832 30652872 -4254698 - Alu SINE Alu -103 72 31 610 88 167 0 chr21 30652891 30652993 -4254577 - MER30 DNA MER1_type -56 174 56 268 287 57 60 chr21 30656301 30656566 -4251004 + L1ME3 LINE L1 5638 5901 -261 948 125 0 0 chr21 30657306 30657503 -4250067 + AluSg/x SINE Alu 154 350 0 376 318 63 63 chr21 30658311 30658610 -4248960 + L2 LINE L2 2969 3267 -5 275 138 0 15 chr21 30659329 30659394 -4248176 + (CA)n Simple_repeat Simple_repeat 1 64 0 446 235 0 6 chr21 30659411 30659577 -4247993 + (CA)n Simple_repeat Simple_repeat 2 166 0 566 233 2 6 chr21 30659594 30660134 -4247436 + (CA)n Simple_repeat Simple_repeat 1 537 0 205 218 36 18 chr21 30662973 30663028 -4244542 - MIR SINE MIR -65 143 88 743 251 81 10 chr21 30663029 30663392 -4244178 + MLT1C LTR MaLR 1 421 -46 2269 77 14 0 chr21 30665203 30665490 -4242080 + AluY SINE Alu 1 291 -20 2218 109 13 3 chr21 30665691 30665994 -4241576 + AluSx SINE Alu 1 306 -6 28 29 0 0 chr21 30666042 30666077 -4241493 + AT_rich Low_complexity Low_complexity 1 35 0 475 90 0 15 chr21 30666077 30666144 -4241426 - U6 snRNA snRNA -41 66 1 2378 106 0 3 chr21 30666421 30666732 -4240838 - AluSg SINE Alu 0 310 1 864 264 74 0 chr21 30667520 30667751 -4239819 - MLT1E1 LTR MaLR -2 652 405 1217 274 35 16 chr21 30667797 30668169 -4239401 - MLT1B-int LTR MaLR -765 606 228 1836 174 71 0 chr21 30668240 30668580 -4238990 + MER47A DNA MER2_type 1 364 -2 205 212 26 18 chr21 30668666 30668692 -4238878 + (TA)n Simple_repeat Simple_repeat 2 26 -89 1256 214 73 25 chr21 30668692 30669019 -4238551 + MER2 DNA MER2_type 1 343 -1 205 212 26 18 chr21 30669019 30669105 -4238465 + (TA)n Simple_repeat Simple_repeat 26 115 0 550 252 7 48 chr21 30669339 30669486 -4238084 - MLT1E3 LTR MaLR -432 192 52 572 238 44 12 chr21 30670916 30671118 -4236452 - MIR SINE MIR -32 230 22 407 282 12 12 chr21 30671178 30671348 -4236222 + L1MC4a LINE L1 5770 5939 -1869 1893 194 18 3 chr21 30673263 30673645 -4233925 + MLT1B LTR MaLR 3 390 0 1244 167 16 25 chr21 30674519 30674764 -4232806 - MLT2D LTR ERVL -19 395 153 782 175 12 25 chr21 30674878 30675038 -4232532 - MLT2D LTR ERVL -256 158 1 277 252 0 8 chr21 30676108 30676188 -4231382 - MIR SINE MIR -50 158 81 1750 193 6 8 chr21 30676434 30676786 -4230784 + MLT1B LTR MaLR 1 351 -39 533 173 19 19 chr21 30677138 30677242 -4230328 - MLT2D LTR ERVL -275 139 36 984 244 69 55 chr21 30677439 30677880 -4229690 + MLT1C LTR MaLR 3 467 0 380 242 87 40 chr21 30681559 30681708 -4225862 + HAL1b LINE L1 245 400 -948 500 242 38 8 chr21 30683585 30683717 -4223853 - MIR SINE MIR -80 182 47 813 190 65 91 chr21 30684966 30685229 -4222341 - MLT1B LTR MaLR -132 258 3 1499 221 63 36 chr21 30685389 30685963 -4221607 - MLT1E3 LTR MaLR -26 598 1 210 288 15 0 chr21 30686779 30686845 -4220725 - L2 LINE L2 -1801 1513 1447 771 55 59 9 chr21 30688195 30688419 -4219151 + (CA)n Simple_repeat Simple_repeat 1 235 0 707 55 73 6 chr21 30688437 30688602 -4218968 + (CA)n Simple_repeat Simple_repeat 2 177 0 264 59 0 0 chr21 30689605 30689639 -4217931 + (ATG)n Simple_repeat Simple_repeat 1 34 0 1870 142 128 21 chr21 30691193 30691614 -4215956 - MER31B LTR ERV1 0 466 1 223 196 22 0 chr21 30695054 30695100 -4212470 + A-rich Low_complexity Low_complexity 5 51 0 588 206 45 19 chr21 30695287 30695442 -4212128 - MER20 DNA MER1_type -47 172 14 630 233 0 0 chr21 30696340 30696520 -4211050 + (CA)n Simple_repeat Simple_repeat 1 180 0 416 235 7 0 chr21 30696532 30696668 -4210902 + (CA)n Simple_repeat Simple_repeat 1 137 0 1180 184 104 42 chr21 30696743 30697052 -4210518 - MLT1D LTR MaLR -177 328 1 2358 94 3 3 chr21 30698783 30699091 -4208479 + AluSc SINE Alu 1 308 -1 225 128 26 0 chr21 30699660 30699699 -4207871 + MLT1B LTR MaLR 5 44 -346 571 55 0 0 chr21 30699701 30699774 -4207796 + MSTA LTR MaLR 1 73 -355 520 110 24 0 chr21 30699838 30699920 -4207650 - LTR47A LTR ERVL -319 133 50 355 191 16 0 chr21 30700009 30700072 -4207498 - LTR47A LTR ERVL -276 176 113 21 0 0 0 chr21 30700218 30700239 -4207331 + AT_rich Low_complexity Low_complexity 1 21 0 2436 97 3 0 chr21 30700248 30700557 -4207013 + AluSx SINE Alu 1 310 -2 974 197 22 40 chr21 30700871 30701094 -4206476 - MER20 DNA MER1_type 0 219 1 271 157 0 39 chr21 30704239 30704290 -4203280 - MLT2B1 LTR ERVL -73 447 399 535 268 102 38 chr21 30704389 30704624 -4202946 - MLT2D LTR ERVL -164 250 1 3243 101 12 30 chr21 30704730 30705223 -4202347 - MER1A DNA MER1_type 0 529 46 315 311 87 41 chr21 30705426 30705622 -4201948 - L2 LINE L2 -2 3311 3107 227 300 30 60 chr21 30705704 30706299 -4201271 + L1MC1 LINE L1 5879 6104 -229 294 252 18 45 chr21 30705881 30705895 -4201675 + L1MA10 LINE L1 6217 6230 -104 2184 113 33 30 chr21 30705895 30706258 -4201312 - THE1B LTR MaLR 0 364 1 294 252 18 45 chr21 30706258 30706354 -4201216 + L1MA10 LINE L1 6230 6324 -10 316 0 0 0 chr21 30706771 30706806 -4200764 + (TTA)n Simple_repeat Simple_repeat 1 180 0 2344 82 0 0 chr21 30706806 30707087 -4200483 - AluY SINE Alu -1 315 1 5140 76 6 1 chr21 30707466 30708123 -4199447 - PABL_A LTR ERV1 0 660 1 692 211 114 0 chr21 30708470 30708636 -4198934 + MER5A DNA MER1_type 4 188 -1 180 152 0 0 chr21 30708791 30708824 -4198746 + (TG)n Simple_repeat Simple_repeat 2 34 0 2240 100 153 6 chr21 30709781 30710153 -4197417 + MSTA LTR MaLR 12 428 0 260 295 0 0 chr21 30710260 30710321 -4197249 + C-rich Low_complexity Low_complexity 1 61 0 255 65 0 0 chr21 30711237 30711268 -4196302 + LTR33 LTR ERVL 487 517 -4 284 254 0 0 chr21 30712240 30712307 -4195263 + L2 LINE L2 3247 3313 0 1983 163 60 13 chr21 30712340 30712721 -4194849 - MER57A LTR ERV1 -4 399 1 1728 170 6 3 chr21 30713177 30713488 -4194082 + AluJo SINE Alu 1 312 0 3103 164 9 8 chr21 30713520 30714050 -4193520 - LTR26B LTR ERV1 0 531 1 2113 198 80 112 chr21 30714442 30714725 -4192845 + LTR8A LTR ERV1 1 292 -435 2682 19 10 0 chr21 30714725 30715036 -4192534 + AluYb8 SINE Alu 1 314 -4 2113 198 80 112 chr21 30715036 30715503 -4192067 + LTR8A LTR ERV1 292 727 0 927 258 84 39 chr21 30715727 30716084 -4191486 + L1ME LINE L1 28 400 -5670 456 236 69 7 chr21 30716394 30716538 -4191032 + L1M LINE L1 5262 5414 -764 410 274 65 0 chr21 30716540 30716664 -4190906 + L1MC4a LINE L1 7598 7729 -79 198 71 0 0 chr21 30716752 30716780 -4190790 + (TC)n Simple_repeat Simple_repeat 1 28 0 442 220 8 8 chr21 30716786 30716904 -4190666 + L1MC4 LINE L1 7923 8040 -2 380 304 23 6 chr21 30716923 30717094 -4190476 + L1MC4 LINE L1 6893 7066 -976 291 271 135 31 chr21 30717126 30717318 -4190252 + L1MC5 LINE L1 6975 7186 -775 2908 265 84 25 chr21 30717653 30718293 -4189277 + MER69B DNA AcHobo 8 609 -1917 1640 126 79 7 chr21 30718293 30718570 -4189000 - AluJo SINE Alu -15 297 1 2908 265 84 25 chr21 30718570 30718582 -4188988 + MER69B DNA AcHobo 609 619 -1907 2191 101 0 0 chr21 30718582 30718879 -4188691 - AluSx SINE Alu -15 297 1 2908 265 84 25 chr21 30718879 30719320 -4188250 + MER69B DNA AcHobo 619 1167 -59 2285 79 0 0 chr21 30719350 30719642 -4187928 + AluSq SINE Alu 1 292 -21 700 189 8 0 chr21 30719646 30719768 -4187802 - FLAM_A SINE Alu -10 123 1 1540 221 61 26 chr21 30719794 30720220 -4187350 - LTR47B LTR ERVL 0 443 3 956 182 0 0 chr21 30721152 30721322 -4186248 - AluJb SINE Alu -9 303 134 2172 107 3 0 chr21 30721760 30722060 -4185510 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr21 30722120 30722141 -4185429 + AT_rich Low_complexity Low_complexity 1 21 0 588 206 81 6 chr21 30722298 30722458 -4185112 - MER20 DNA MER1_type -17 202 31 1837 92 18 22 chr21 30723862 30724135 -4183435 + AluSx SINE Alu 27 298 -14 248 341 87 0 chr21 30724754 30724880 -4182690 + MLT1K LTR MaLR 158 294 -294 30 27 0 0 chr21 30726441 30726478 -4181092 + AT_rich Low_complexity Low_complexity 1 37 0 858 222 24 0 chr21 30726934 30727101 -4180469 - MER5A DNA MER1_type -4 185 15 1381 181 32 13 chr21 30727127 30727703 -4179867 + L1MB4 LINE L1 5520 6182 -1 315 0 0 0 chr21 30728278 30728313 -4179257 + (CA)n Simple_repeat Simple_repeat 2 36 0 2368 78 7 0 chr21 30728911 30729218 -4178352 + AluSp SINE Alu 1 309 -4 181 337 45 0 chr21 30729259 30729348 -4178222 - L2 LINE L2 -2754 560 468 2503 144 23 30 chr21 30729569 30729998 -4177572 + MSTB LTR MaLR 1 426 0 2093 114 3 16 chr21 30730618 30730934 -4176636 - AluSx SINE Alu 0 312 1 333 272 95 48 chr21 30732122 30732269 -4175301 - L1M4 LINE L1 -885 5261 5108 469 270 62 29 chr21 30732617 30732866 -4174704 + L1P5 LINE L1 5329 5570 -551 1430 199 100 15 chr21 30735790 30736181 -4171389 + MER69 DNA AcHobo 1975 2398 -128 530 160 181 0 chr21 30736854 30736948 -4170622 + MER63 DNA MER1_type 679 789 -272 1029 157 0 2 chr21 30737539 30737984 -4169586 + (TTGG)n Simple_repeat Simple_repeat 1 623 0 347 314 51 22 chr21 30738269 30738406 -4169164 - MIR SINE MIR -67 141 1 2017 237 115 56 chr21 30739199 30739895 -4167675 + MER21B LTR ERV1 12 748 -115 302 291 39 19 chr21 30740477 30740580 -4166990 - MIR SINE MIR -62 146 42 1632 174 24 3 chr21 30742305 30742593 -4164977 - AluJb SINE Alu -15 297 4 33 25 0 0 chr21 30742787 30742827 -4164743 + AT_rich Low_complexity Low_complexity 1 40 0 591 225 89 24 chr21 30743212 30743256 -4164314 - LTR16A1 LTR ERVL 0 457 417 2257 58 14 3 chr21 30743256 30743551 -4164019 - AluSq SINE Alu -15 298 1 591 225 89 24 chr21 30743551 30743719 -4163851 - LTR16A1 LTR ERVL -40 417 231 283 262 36 24 chr21 30746302 30746386 -4161184 - MIR SINE MIR -1 261 177 2027 109 33 27 chr21 30746432 30746763 -4160807 + MER49 LTR ERV1 1 333 -590 2608 146 63 9 chr21 30746741 30747199 -4160371 + LTR44 LTR ERV1 37 519 0 252 276 161 0 chr21 30747202 30747289 -4160281 - MIR SINE MIR -154 108 8 185 150 100 0 chr21 30748949 30748989 -4158581 + MIR SINE MIR 101 144 -118 225 175 0 25 chr21 30749026 30749066 -4158504 + L2 LINE L2 3216 3254 -18 240 246 0 72 chr21 30749646 30749715 -4157855 + L2 LINE L2 3247 3310 -3 2224 89 0 25 chr21 30749980 30750294 -4157276 + AluSq SINE Alu 1 306 -7 543 264 42 12 chr21 30751419 30751586 -4155984 - L1ME4a LINE L1 -7 6114 5943 1804 140 13 10 chr21 30751800 30752100 -4155470 - AluJb SINE Alu -11 301 1 935 314 96 31 chr21 30753337 30753694 -4153876 + L2 LINE L2 2328 3032 -240 409 301 58 34 chr21 30753721 30753989 -4153581 + L2 LINE L2 2760 3032 -240 211 310 28 0 chr21 30754499 30754570 -4153000 - MIR SINE MIR -117 145 73 413 263 0 44 chr21 30755064 30755178 -4152392 - L2 LINE L2 -13 3300 3192 240 381 8 32 chr21 30755227 30755353 -4152217 - MIR3 SINE MIR -76 132 10 2110 135 3 3 chr21 30755437 30755734 -4151836 - AluSx SINE Alu -15 297 1 2220 158 45 12 chr21 30756082 30756500 -4151070 - MSTB1 LTR MaLR 0 432 1 2474 92 0 0 chr21 30756674 30756980 -4150590 - AluSx SINE Alu -6 306 1 380 248 101 43 chr21 30757591 30757849 -4149721 - HAL1 LINE L1 -3 2504 2232 1956 103 4 4 chr21 30758625 30758877 -4148693 - AluSc SINE Alu -57 252 1 3404 186 68 16 chr21 30758877 30759905 -4147665 + L1M1 LINE L1 3346 4425 -3140 2635 153 20 33 chr21 30759905 30760055 -4147515 + L1MA9 LINE L1 5767 5917 -395 1748 174 6 34 chr21 30760055 30760376 -4147194 + AluJo SINE Alu 1 312 0 2635 153 20 33 chr21 30760376 30760773 -4146797 + L1MA9 LINE L1 5917 6307 -5 46 92 0 0 chr21 30762229 30762359 -4145211 + GC_rich Low_complexity Low_complexity 1 130 0 44 88 0 0 chr21 30762420 30762534 -4145036 + GC_rich Low_complexity Low_complexity 1 114 0 183 42 0 0 chr21 30763437 30763461 -4144109 + (CCTG)n Simple_repeat Simple_repeat 3 26 0 248 83 104 0 chr21 30764223 30764271 -4143299 - L1PA12 LINE L1 0 6168 6116 2162 135 0 0 chr21 30764313 30764610 -4142960 - AluSx SINE Alu -15 297 1 480 262 87 23 chr21 30765672 30765844 -4141726 - MIR SINE MIR 0 262 80 236 211 11 133 chr21 30767651 30767741 -4139829 - LTR49 LTR ERV1 -11 584 506 1183 251 42 38 chr21 30768386 30768509 -4139061 - L1MC4 LINE L1 -2 8040 7919 249 83 0 0 chr21 30768509 30768545 -4139025 + (TG)n Simple_repeat Simple_repeat 2 37 0 1183 251 42 38 chr21 30768545 30768900 -4138670 - L1MC4 LINE L1 -123 7919 7560 580 233 13 32 chr21 30768896 30769069 -4138501 - L1MC4 LINE L1 -311 7684 7429 796 261 38 16 chr21 30769045 30769186 -4138384 + L1MD3 LINE L1 6474 6610 -1198 252 59 0 0 chr21 30769186 30769220 -4138350 + (TG)n Simple_repeat Simple_repeat 2 35 0 796 261 38 16 chr21 30769220 30769458 -4138112 + L1MD3 LINE L1 6610 6833 -975 506 225 99 0 chr21 30769428 30769579 -4137991 + L1MC4 LINE L1 6958 7123 -919 621 290 108 9 chr21 30769672 30769903 -4137667 + L1MC4a LINE L1 7169 7422 -386 484 240 0 0 chr21 30770389 30770493 -4137077 - MLT1C LTR MaLR 0 505 402 801 244 92 4 chr21 30770578 30770816 -4136754 - MLT1C LTR MaLR -203 264 6 2924 229 85 10 chr21 30773316 30774108 -4133462 + MER21B LTR ERV1 2 852 -11 2224 108 3 10 chr21 30777095 30777401 -4130169 + AluSq SINE Alu 1 304 -9 228 194 142 52 chr21 30777760 30777841 -4129729 + L1 LINE L1 4903 4975 -1171 1982 126 56 0 chr21 30777841 30778127 -4129443 + AluSq SINE Alu 3 304 -9 228 194 142 52 chr21 30778127 30778179 -4129391 + L1 LINE L1 4975 5048 -1098 540 0 0 0 chr21 30779147 30779207 -4128363 + (CA)n Simple_repeat Simple_repeat 2 61 0 896 309 52 21 chr21 30782509 30783039 -4124531 - L1ME2 LINE L1 -2 6162 5623 788 233 48 10 chr21 30784693 30784899 -4122671 + MIR SINE MIR 14 227 -35 741 222 67 110 chr21 30785051 30785497 -4122073 - MSTC LTR MaLR 0 428 2 1203 178 14 0 chr21 30786029 30786242 -4121328 + MER20 DNA MER1_type 4 219 0 218 301 24 12 chr21 30786724 30786807 -4120763 + MIR3 SINE MIR 85 168 -40 2239 178 24 7 chr21 30788549 30788966 -4118604 - LTR42 LTR ERVL 0 495 72 2102 120 9 29 chr21 30789539 30789880 -4117690 - MER1B DNA MER1_type 0 337 4 1881 185 3 3 chr21 30790291 30790593 -4116977 - AluJb SINE Alu -10 302 1 626 304 79 42 chr21 30796664 30797311 -4110259 + L2 LINE L2 2107 2777 -537 523 215 39 73 chr21 30798422 30798682 -4108888 - L1MC5 LINE L1 -51 7910 7660 4394 239 54 0 chr21 30798677 30799869 -4107701 + L1M4 LINE L1 3144 4399 -1747 1557 144 49 10 chr21 30799869 30800174 -4107396 + L1MB8 LINE L1 5861 6177 -1 455 248 65 61 chr21 30800306 30800350 -4107220 - L1MC5 LINE L1 -430 7531 7489 311 0 26 0 chr21 30800350 30800389 -4107181 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 455 248 65 61 chr21 30800389 30800574 -4106996 - L1MC5 LINE L1 -472 7489 7301 346 227 0 0 chr21 30801057 30801132 -4106438 + L2 LINE L2 3239 3313 0 682 200 0 0 chr21 30801146 30801271 -4106299 - MLT1J LTR MaLR -217 294 170 219 256 105 23 chr21 30802895 30802981 -4104589 - L2 LINE L2 -1 3271 3179 217 356 0 14 chr21 30803229 30803302 -4104268 - MIR SINE MIR -97 165 94 2231 104 0 7 chr21 30803531 30803839 -4103731 - AluSx SINE Alu -6 306 1 936 186 47 0 chr21 30806493 30806665 -4100905 - AluJb SINE Alu -4 308 129 254 246 87 87 chr21 30806878 30807142 -4100428 - L1ME4a LINE L1 -20 6101 5838 331 344 47 16 chr21 30807179 30807307 -4100263 - L1ME4a LINE L1 -380 5741 5610 2321 98 0 0 chr21 30808145 30808450 -4099120 + AluSx SINE Alu 1 305 -7 334 312 77 22 chr21 30809422 30809648 -4097922 + MIR SINE MIR 8 249 -13 1405 181 30 40 chr21 30812655 30812958 -4094612 + AluJo SINE Alu 1 300 -12 277 257 48 19 chr21 30813706 30813811 -4093759 + MIR SINE MIR 66 173 -89 235 186 0 0 chr21 30817228 30817271 -4090299 + MER58B DNA MER1_type 1 43 -298 182 256 44 11 chr21 30817929 30818019 -4089551 + L2 LINE L2 2871 2963 -309 348 320 72 41 chr21 30818063 30818354 -4089216 + L2 LINE L2 2950 3249 -64 313 367 148 0 chr21 30820451 30820661 -4086909 - HAL1 LINE L1 -650 1857 1617 608 277 68 25 chr21 30820825 30821179 -4086391 - HAL1 LINE L1 -1131 1376 1008 778 253 69 23 chr21 30822480 30822828 -4084742 - L1MC4 LINE L1 -5 8037 7674 1145 162 88 0 chr21 30822981 30823197 -4084373 - MER46A DNA MER2_type 0 236 2 565 276 99 0 chr21 30823682 30823863 -4083707 + MIR SINE MIR 2 200 -62 948 310 36 11 chr21 30824642 30824923 -4082647 + L1MEd LINE L1 231 518 -5601 1104 256 40 56 chr21 30824978 30825604 -4081966 + L1MEd LINE L1 627 1242 -4877 423 167 52 0 chr21 30825871 30825989 -4081581 + MER58B DNA MER1_type 81 338 -3 299 332 49 15 chr21 30826249 30826454 -4081116 + L1MEd LINE L1 2106 2317 -3812 278 236 34 22 chr21 30828614 30828703 -4078867 + CT-rich Low_complexity Low_complexity 2 91 0 543 296 50 0 chr21 30832319 30832518 -4075052 - MER45C DNA AcHobo -729 224 16 2129 203 40 16 chr21 30833245 30833880 -4073690 - LTR34 LTR ERV1 -6 591 15 2268 90 3 0 chr21 30833894 30834193 -4073377 - AluSg SINE Alu -10 300 1 21 0 0 0 chr21 30834571 30834592 -4072978 + AT_rich Low_complexity Low_complexity 1 21 0 334 338 29 7 chr21 30834592 30834731 -4072839 - L1ME2 LINE L1 0 6164 6023 180 0 0 0 chr21 30835816 30835836 -4071734 + (GGGAA)n Simple_repeat Simple_repeat 1 20 0 1474 215 14 25 chr21 30839761 30840119 -4067451 + MLT2C1 LTR ERVL 1 354 -43 666 227 0 0 chr21 30840119 30840349 -4067221 + (TG)n Simple_repeat Simple_repeat 1 230 0 265 289 81 27 chr21 30840773 30840922 -4066648 - L2 LINE L2 -3 3310 3154 2127 105 3 43 chr21 30842834 30843158 -4064412 - AluSx SINE Alu -1 311 1 3439 162 63 48 chr21 30844918 30845763 -4061807 - MER21A LTR ERV1 -6 925 13 349 330 0 0 chr21 30845763 30845851 -4061719 - L1MC4 LINE L1 -1341 6701 6614 24 53 0 0 chr21 30845865 30845903 -4061667 + AT_rich Low_complexity Low_complexity 1 38 0 981 217 81 14 chr21 30846112 30846653 -4060917 + MER82 DNA MER2_type 7 622 -31 2235 112 52 30 chr21 30847753 30848120 -4059450 - THE1C LTR MaLR 0 375 1 306 315 28 0 chr21 30849135 30849243 -4058327 - HERVL18 LTR ERVL -3742 2305 2195 400 151 21 21 chr21 30849460 30849553 -4058017 - MER83B-int LTR ERV1 -2138 4620 4528 2137 221 127 30 chr21 30849592 30849772 -4057798 - MER50 LTR ERV1 0 734 573 2535 52 3 0 chr21 30849772 30850081 -4057489 + AluY SINE Alu 1 310 -1 2137 221 127 30 chr21 30850081 30850569 -4057001 - MER50 LTR ERV1 -161 573 1 1464 144 23 73 chr21 30850572 30850886 -4056684 - MER83B-int LTR ERV1 -2228 4530 4234 1918 137 17 20 chr21 30850886 30851185 -4056385 + AluSx SINE Alu 2 299 -13 1464 144 23 73 chr21 30851185 30851224 -4056346 - MER83B-int LTR ERV1 -2524 4234 4195 5480 57 11 12 chr21 30851228 30851972 -4055598 - MER4E LTR ERV1 -22 744 2 2343 80 3 43 chr21 30852090 30852416 -4055154 - AluSq SINE Alu 0 313 1 415 235 52 15 chr21 30852416 30852546 -4055024 - MER83B-int LTR ERV1 -2555 4203 4069 3064 156 15 41 chr21 30852540 30853123 -4054447 - MER83B-int LTR ERV1 -2867 3891 3324 669 216 97 0 chr21 30853209 30853394 -4054176 - MER83B-int LTR ERV1 -3831 2927 2725 2118 133 44 61 chr21 30853437 30853480 -4054090 - LTR10E LTR ERV1 -6 585 543 2569 73 0 0 chr21 30853480 30853783 -4053787 + AluY SINE Alu 1 303 -8 2118 133 44 61 chr21 30853783 30854303 -4053267 - LTR10E LTR ERV1 -48 543 1 374 197 94 39 chr21 30854303 30854430 -4053140 - MER83B-int LTR ERV1 -4064 2694 2561 555 178 36 10 chr21 30854542 30854811 -4052759 - MER83B-int LTR ERV1 -3220 2726 851 255 154 77 51 chr21 30855211 30855289 -4052281 - MER83B-int LTR ERV1 -2594 2286 2207 2149 106 7 23 chr21 30855293 30855595 -4051975 + AluSx SINE Alu 1 297 -15 1691 164 150 0 chr21 30856001 30856355 -4051215 - LTR47A LTR ERVL -1 451 45 1111 121 0 0 chr21 30856355 30856512 -4051058 + MER4B LTR ERV1 1 157 -453 2789 124 63 58 chr21 30856555 30856721 -4050849 - MER4B LTR ERV1 -36 574 410 2423 94 0 31 chr21 30856721 30857041 -4050529 + AluSx SINE Alu 1 310 -2 2789 124 63 58 chr21 30857041 30857445 -4050125 - MER4B LTR ERV1 -200 410 1 2038 120 110 32 chr21 30857454 30857855 -4049715 + MER4E LTR ERV1 348 779 0 1801 144 67 25 chr21 30857859 30858219 -4049351 - THE1C LTR MaLR 0 375 1 297 149 0 0 chr21 30858221 30858268 -4049302 - LTR47A LTR ERVL -405 47 1 329 288 64 68 chr21 30858316 30858566 -4049004 - MLT1I LTR MaLR -78 331 83 275 246 0 0 chr21 30858657 30858718 -4048852 - L1MEd LINE L1 -2005 4124 4064 382 239 52 58 chr21 30858728 30858883 -4048687 - L1MEd LINE L1 -2098 4031 3878 661 173 0 24 chr21 30859017 30859144 -4048426 - AluJb SINE Alu -2 310 187 522 325 55 15 chr21 30859191 30859391 -4048179 - L1MEd LINE L1 -3698 2431 2224 333 296 43 60 chr21 30859440 30859631 -4047939 - L1MEd LINE L1 -4904 1215 1031 2248 114 7 19 chr21 30859631 30859939 -4047631 - AluSx SINE Alu -8 304 1 333 296 43 60 chr21 30859939 30860095 -4047475 - L1MEd LINE L1 -5088 1031 874 2071 130 0 55 chr21 30860139 30860469 -4047101 + AluSx SINE Alu 1 312 0 2020 127 89 27 chr21 30861668 30862071 -4045499 - MSTA LTR MaLR 0 428 1 688 53 68 31 chr21 30863807 30864420 -4043150 + (CA)n Simple_repeat Simple_repeat 1 635 0 608 170 21 29 chr21 30864443 30864847 -4042723 + (CA)n Simple_repeat Simple_repeat 1 400 0 504 298 24 65 chr21 30866728 30866797 -4040773 - MLT1L LTR MaLR -175 440 370 2238 121 0 0 chr21 30866797 30867095 -4040475 + AluSc SINE Alu 1 298 -11 504 298 24 65 chr21 30867095 30867364 -4040206 - MLT1L LTR MaLR -245 370 116 3286 157 42 77 chr21 30868813 30869117 -4038453 - MER72 LTR ERV1 0 722 409 2059 123 0 11 chr21 30869117 30869394 -4038176 + AluSq SINE Alu 1 274 -39 2312 107 7 0 chr21 30869398 30869706 -4037864 + AluSg SINE Alu 1 310 0 3286 157 42 77 chr21 30869706 30870136 -4037434 - MER72 LTR ERV1 -316 406 9 2310 118 0 0 chr21 30871862 30872168 -4035402 + AluSx SINE Alu 1 306 -6 2778 158 61 50 chr21 30873052 30873655 -4033915 + MER4B LTR ERV1 1 610 0 386 250 39 16 chr21 30874288 30874416 -4033154 - MER5B DNA MER1_type -35 143 13 734 236 116 14 chr21 30875028 30875350 -4032220 + MLT1A2 LTR MaLR 18 389 -1 183 273 18 0 chr21 30876773 30876828 -4030742 - MIR SINE MIR -101 107 52 629 213 58 35 chr21 30876867 30877041 -4030529 - L1MEc LINE L1 -4099 2297 2120 1135 57 17 11 chr21 30877041 30877216 -4030354 + (TAGA)n Simple_repeat Simple_repeat 3 178 0 601 158 6 25 chr21 30877251 30877409 -4030161 + (TAGA)n Simple_repeat Simple_repeat 3 157 0 1034 91 26 25 chr21 30877428 30878016 -4029554 + (TAGA)n Simple_repeat Simple_repeat 1 588 0 832 49 68 12 chr21 30878050 30878569 -4029001 + (TAGA)n Simple_repeat Simple_repeat 1 548 0 245 176 0 0 chr21 30878569 30878615 -4028955 + MLT2B3 LTR ERVL 470 554 0 333 327 55 42 chr21 30879328 30879493 -4028077 - MERVL LTR ERVL -1124 4402 4195 1081 158 6 0 chr21 30879560 30879724 -4027846 - FRAM SINE Alu -11 165 1 571 342 42 24 chr21 30879724 30880054 -4027516 - MERVL LTR ERVL -2909 2576 2241 512 240 11 69 chr21 30880436 30880501 -4027069 + MER5B DNA MER1_type 1 68 -110 2417 98 0 0 chr21 30880501 30880807 -4026763 + AluSx SINE Alu 1 306 -6 512 240 11 69 chr21 30880807 30880916 -4026654 + MER5B DNA MER1_type 68 165 -13 672 237 71 0 chr21 30881579 30881748 -4025822 - MER20 DNA MER1_type -33 186 6 721 261 118 41 chr21 30882218 30882659 -4024911 - LTR33 LTR ERVL -25 496 22 372 314 24 0 chr21 30883024 30883193 -4024377 + (TCCA)n Simple_repeat Simple_repeat 1 173 0 247 202 24 0 chr21 30883229 30883313 -4024257 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 262 184 26 0 chr21 30883351 30883427 -4024143 + (TCCA)n Simple_repeat Simple_repeat 1 78 0 383 214 17 17 chr21 30883465 30883643 -4023927 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 362 219 17 17 chr21 30883681 30883859 -4023711 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 286 147 29 0 chr21 30883909 30883977 -4023593 + (TCCA)n Simple_repeat Simple_repeat 1 70 0 392 198 11 33 chr21 30884015 30884197 -4023373 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 200 324 0 20 chr21 30884232 30884334 -4023236 + (CATATA)n Simple_repeat Simple_repeat 6 105 0 282 358 17 0 chr21 30884316 30884489 -4023081 + (TTCA)n Simple_repeat Simple_repeat 2 177 0 493 273 6 33 chr21 30884437 30884620 -4022950 + (TCCA)n Simple_repeat Simple_repeat 1 178 0 762 215 0 0 chr21 30885783 30886059 -4021511 + (CA)n Simple_repeat Simple_repeat 1 276 0 673 280 32 5 chr21 30887331 30887507 -4020063 + L1MC3 LINE L1 6402 6585 -1200 2265 97 0 3 chr21 30887507 30887797 -4019773 + AluSg SINE Alu 1 289 -21 673 280 32 5 chr21 30887797 30887809 -4019761 + L1MC3 LINE L1 6585 6595 -1190 5250 194 41 17 chr21 30887822 30889033 -4018537 + L1MC3 LINE L1 6577 7784 -1 29 0 0 0 chr21 30889774 30889803 -4017767 + GC_rich Low_complexity Low_complexity 1 29 0 304 264 71 22 chr21 30890403 30890542 -4017028 - MIR SINE MIR -53 155 14 459 274 80 30 chr21 30890721 30890958 -4016612 + L2 LINE L2 2995 3243 -70 2310 112 0 0 chr21 30891858 30892154 -4015416 - AluSx SINE Alu -12 300 5 2117 127 6 19 chr21 30892428 30892742 -4014828 + AluSg SINE Alu 1 310 0 273 315 0 0 chr21 30894438 30894511 -4013059 - MIR SINE MIR -110 152 80 374 263 26 0 chr21 30895882 30896034 -4011536 + L1ME LINE L1 5184 5339 -807 379 243 88 39 chr21 30896081 30896262 -4011308 + L1ME LINE L1 5397 5586 -535 2235 108 0 3 chr21 30896312 30896608 -4010962 + AluSx SINE Alu 1 295 -17 2428 90 0 7 chr21 30896827 30897137 -4010433 - AluSc SINE Alu -1 308 1 439 146 47 115 chr21 30898574 30898766 -4008804 + (CCCCAG)n Simple_repeat Simple_repeat 1 179 0 998 251 67 5 chr21 30899121 30899543 -4008027 + MLT2B2 LTR ERVL 6 464 -56 315 281 82 14 chr21 30899566 30899712 -4007858 + L2 LINE L2 2572 2727 -587 538 304 66 75 chr21 30899784 30900251 -4007319 + L2 LINE L2 2818 3280 -33 236 224 35 0 chr21 30902027 30902112 -4005458 + G-rich Low_complexity Low_complexity 1 88 0 30 59 0 0 chr21 30902188 30902239 -4005331 + GC_rich Low_complexity Low_complexity 1 51 0 214 114 23 23 chr21 30902262 30902306 -4005264 + C-rich Low_complexity Low_complexity 2 45 0 28 0 0 0 chr21 30902481 30902509 -4005061 + GC_rich Low_complexity Low_complexity 1 28 0 341 246 8 0 chr21 30903650 30903784 -4003786 + (CA)n Simple_repeat Simple_repeat 1 135 0 306 341 116 12 chr21 30904118 30904291 -4003279 + MIR SINE MIR 51 241 -21 923 133 14 0 chr21 30909040 30909183 -3998387 + L1PB1 LINE L1 6007 6151 0 2310 71 3 0 chr21 30909586 30909880 -3997690 - AluSg SINE Alu -15 295 1 1022 214 31 27 chr21 30909889 30910183 -3997387 - L1MB3 LINE L1 -129 6054 5760 302 272 112 32 chr21 30910488 30910613 -3996957 + MIR SINE MIR 15 149 -113 661 133 44 20 chr21 30910999 30911504 -3996066 + (CA)n Simple_repeat Simple_repeat 1 517 0 526 150 11 48 chr21 30911546 30911733 -3995837 + (CA)n Simple_repeat Simple_repeat 1 180 0 461 144 38 25 chr21 30911744 30911904 -3995666 + (CA)n Simple_repeat Simple_repeat 1 162 0 227 163 47 0 chr21 30913193 30913236 -3994334 + GA-rich Low_complexity Low_complexity 4 48 0 949 274 63 55 chr21 30913442 30913899 -3993671 + MLT1C LTR MaLR 1 461 -6 439 260 78 2 chr21 30915071 30915364 -3992206 - MLT1B LTR MaLR -26 364 1 779 267 9 4 chr21 30917659 30917884 -3989686 - MLT1D LTR MaLR -17 488 263 186 158 26 0 chr21 30918227 30918265 -3989305 + MIR SINE MIR 110 148 -114 243 276 53 0 chr21 30918357 30918433 -3989137 - MIR SINE MIR -143 119 40 585 240 2 0 chr21 30918593 30919099 -3988471 + (CA)n Simple_repeat Simple_repeat 1 507 0 474 187 0 37 chr21 30919112 30919299 -3988271 + (CA)n Simple_repeat Simple_repeat 1 180 0 311 302 82 44 chr21 30919354 30919513 -3988057 - L1MC5 LINE L1 -361 7600 7436 416 365 37 44 chr21 30919541 30919837 -3987733 + L1MC5 LINE L1 7623 7916 -45 425 119 0 0 chr21 30922865 30922932 -3984638 - Alu SINE Alu -10 302 236 1031 300 77 28 chr21 30923490 30923920 -3983650 - L1ME4a LINE L1 -1 6120 5670 273 292 10 31 chr21 30923958 30924054 -3983516 + MIR SINE MIR 169 262 0 1652 270 35 40 chr21 30924215 30924388 -3983182 - L1MD2 LINE L1 -27 6332 6160 2218 178 30 28 chr21 30924388 30924815 -3982755 + MSTA LTR MaLR 1 428 0 1652 270 35 40 chr21 30924815 30925248 -3982322 - L1MD2 LINE L1 -199 6160 5729 2050 152 0 0 chr21 30926192 30926494 -3981076 - AluSx SINE Alu -10 302 1 206 308 13 96 chr21 30929605 30929761 -3977809 - MIR SINE MIR -28 234 92 615 228 45 20 chr21 30930664 30930866 -3976704 - LTR37A LTR ERV1 -20 406 200 876 315 50 58 chr21 30930914 30931650 -3975920 - MER31-int LTR ERV1 -694 4242 3513 190 286 0 0 chr21 30932632 30932681 -3974889 + MER5A DNA MER1_type 63 111 -78 2444 56 0 3 chr21 30934017 30934319 -3973251 - AluSq SINE Alu -12 301 1 2312 98 0 0 chr21 30935085 30935391 -3972179 + AluSx SINE Alu 2 307 -5 194 135 27 0 chr21 30936792 30936829 -3970741 - MIR SINE MIR -65 143 106 244 156 9 37 chr21 30939517 30939626 -3967944 + (CACCAT)n Simple_repeat Simple_repeat 3 108 0 181 182 0 26 chr21 30939675 30939752 -3967818 + (CACCAT)n Simple_repeat Simple_repeat 5 79 0 368 193 6 57 chr21 30939767 30939943 -3967627 + (CACCAT)n Simple_repeat Simple_repeat 3 169 0 201 159 0 0 chr21 30939959 30940003 -3967567 + (CACCAT)n Simple_repeat Simple_repeat 6 49 0 253 208 0 47 chr21 30940017 30940123 -3967447 + (CACCAT)n Simple_repeat Simple_repeat 3 103 0 224 188 6 38 chr21 30940139 30940299 -3967271 + (CACCAT)n Simple_repeat Simple_repeat 4 158 0 341 229 0 46 chr21 30940348 30940523 -3967047 + (CACCAT)n Simple_repeat Simple_repeat 3 169 0 573 287 32 0 chr21 30940795 30940983 -3966587 + MER20 DNA MER1_type 18 211 -8 297 196 129 110 chr21 30941051 30941214 -3966356 - MER5A DNA MER1_type -1 188 23 326 244 125 119 chr21 30941807 30941849 -3965721 + MER5B DNA MER1_type 2 42 -136 2323 52 28 0 chr21 30941849 30942137 -3965433 - AluY SINE Alu -11 300 5 2307 99 3 0 chr21 30942140 30942443 -3965127 - AluSp SINE Alu -9 304 1 326 244 125 119 chr21 30942443 30942572 -3964998 + MER5B DNA MER1_type 43 178 0 264 30 0 0 chr21 30942741 30942774 -3964796 + (TTGG)n Simple_repeat Simple_repeat 4 36 0 1153 219 27 30 chr21 30946111 30946439 -3961131 - MLT1A2 LTR MaLR -47 327 1 28 0 0 0 chr21 30947381 30947409 -3960161 + AT_rich Low_complexity Low_complexity 1 28 0 2225 114 0 29 chr21 30948094 30948410 -3959160 - AluSx SINE Alu -5 307 1 1122 231 83 32 chr21 30948526 30948937 -3958633 - L1ME2 LINE L1 -97 6067 5636 349 183 12 24 chr21 30949012 30949094 -3958476 - L1MD3 LINE L1 -364 7631 7551 387 173 27 0 chr21 30949126 30949201 -3958369 - L1MD3 LINE L1 -558 7437 7361 1759 256 64 14 chr21 30949222 30949847 -3957723 - L1ME2 LINE L1 -1189 4957 4302 735 241 79 38 chr21 30949907 30949964 -3957606 - L1MCa LINE L1 -4583 1843 1790 1613 182 52 39 chr21 30949964 30950272 -3957298 - AluJo SINE Alu 0 312 1 735 241 79 38 chr21 30950272 30950610 -3956960 - L1MCa LINE L1 -4636 1790 1355 968 293 36 36 chr21 30950598 30951240 -3956330 - L1MCa LINE L1 -5106 1501 860 762 292 50 14 chr21 30951375 30951656 -3955914 - L2 LINE L2 -508 2806 2516 333 0 0 0 chr21 30952985 30953022 -3954548 + (CA)n Simple_repeat Simple_repeat 2 38 0 501 168 56 0 chr21 30954748 30954855 -3952715 + Charlie5 DNA MER1_type 2324 2436 -176 1503 189 56 104 chr21 30954861 30954914 -3952656 - L1MB7 LINE L1 -20 6164 6110 2348 102 3 0 chr21 30954914 30955208 -3952362 + AluSx SINE Alu 1 295 -17 1503 189 56 104 chr21 30955208 30955672 -3951898 - L1MB7 LINE L1 -74 6110 5672 644 249 53 6 chr21 30956282 30956451 -3951119 + MIR SINE MIR 86 262 0 2423 87 10 3 chr21 30957096 30957407 -3950163 - AluSq SINE Alu 0 313 1 4238 76 14 0 chr21 30957466 30958019 -3949551 + L1PA10 LINE L1 5603 6163 -5 376 256 10 5 chr21 30958025 30958214 -3949356 - L1ME1 LINE L1 -74 6026 5800 748 110 14 10 chr21 30958215 30958412 -3949158 - AluJb SINE Alu 0 320 58 1221 203 65 87 chr21 30958441 30958677 -3948893 - L1ME1 LINE L1 -334 5764 5524 2474 84 0 3 chr21 30958677 30958988 -3948582 + AluSx SINE Alu 1 310 -2 1221 203 65 87 chr21 30958988 30959257 -3948313 - L1ME1 LINE L1 -574 5524 5284 2164 114 3 3 chr21 30959257 30959547 -3948023 + AluSx SINE Alu 1 290 -22 1221 203 65 87 chr21 30959547 30959804 -3947766 - L1ME1 LINE L1 -814 5284 5023 2026 85 78 7 chr21 30959805 30960088 -3947482 - AluSq SINE Alu -10 303 1 280 145 0 20 chr21 30960089 30960144 -3947426 - Alu SINE Alu -259 43 1 3452 243 53 20 chr21 30960241 30961333 -3946237 - L1ME1 LINE L1 -1121 4959 3832 561 238 16 36 chr21 30961336 30961529 -3946041 - L1ME1 LINE L1 -2154 3926 3738 2332 89 10 0 chr21 30961681 30961985 -3945585 - AluSx SINE Alu -5 307 1 527 316 9 0 chr21 30961986 30962201 -3945369 - L1ME1 LINE L1 -2367 3713 3497 820 118 70 37 chr21 30962250 30962437 -3945133 + L1MA8 LINE L1 6087 6279 -12 347 84 6 0 chr21 30962457 30962515 -3945055 - Alu SINE Alu -7 293 243 2430 85 3 25 chr21 30962551 30962868 -3944702 - AluY SINE Alu -1 310 1 359 314 14 5 chr21 30963529 30963739 -3943831 - L1ME1 LINE L1 -4147 2114 1903 180 0 0 0 chr21 30963740 30963760 -3943810 + (T)n Simple_repeat Simple_repeat 1 20 0 1060 209 51 64 chr21 30963767 30963896 -3943674 - L1MC1 LINE L1 -7 6326 6197 2116 116 34 0 chr21 30963896 30964188 -3943382 + AluSx SINE Alu 1 302 -10 1060 209 51 64 chr21 30964188 30964354 -3943216 - L1MC1 LINE L1 -136 6197 6035 4056 163 53 1 chr21 30964346 30965120 -3942450 - L1MC2 LINE L1 -214 6130 5317 767 275 36 66 chr21 30965121 30965294 -3942276 - L1ME1 LINE L1 -4351 1910 1733 2419 89 0 22 chr21 30965294 30965609 -3941961 - AluSx SINE Alu -4 308 1 767 275 36 66 chr21 30965609 30965846 -3941724 - L1ME1 LINE L1 -4528 1733 1512 1091 115 51 0 chr21 30965846 30966003 -3941567 - AluSx SINE Alu -8 302 138 676 120 0 0 chr21 30966016 30966108 -3941462 + AluSg/x SINE Alu 201 292 -17 1183 53 0 0 chr21 30966110 30966241 -3941329 - AluSx SINE Alu -180 133 3 1115 257 69 64 chr21 30966250 30966452 -3941118 - L1ME1 LINE L1 -4605 1475 1275 216 0 0 0 chr21 30966452 30966476 -3941094 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2023 76 73 7 chr21 30966478 30966753 -3940817 - AluSq SINE Alu -20 293 1 1115 257 69 64 chr21 30966753 30967536 -3940034 - L1ME1 LINE L1 -4805 1275 525 323 286 97 11 chr21 30967680 30967855 -3939715 - L1ME1 LINE L1 -5643 427 238 2215 115 3 19 chr21 30967904 30968217 -3939353 + AluSx SINE Alu 1 308 -4 240 204 159 0 chr21 30968224 30968312 -3939258 - L1M1 LINE L1 -480 5825 5724 2564 63 0 0 chr21 30968764 30969063 -3938507 + AluSp SINE Alu 2 300 -13 2374 88 3 0 chr21 30969275 30969571 -3937999 + AluSp SINE Alu 1 297 -16 2348 99 3 7 chr21 30970523 30970827 -3936743 - AluSg SINE Alu -7 303 1 2119 253 53 26 chr21 30973508 30973777 -3933793 - L1MD1 LINE L1 -9 6233 5973 2362 96 3 6 chr21 30973777 30974090 -3933480 - AluSp SINE Alu -1 312 1 2119 253 53 26 chr21 30974090 30975110 -3932460 - L1MD1 LINE L1 -269 5973 4894 858 132 20 26 chr21 30975129 30975145 -3932425 - AluJo SINE Alu -161 151 136 288 0 0 0 chr21 30975145 30975177 -3932393 + (TA)n Simple_repeat Simple_repeat 2 33 0 858 132 20 26 chr21 30975177 30975312 -3932258 - AluJo SINE Alu -176 136 1 2438 231 28 71 chr21 30975362 30975880 -3931690 - L1MD1 LINE L1 -1254 4892 4430 1746 146 14 34 chr21 30975880 30976174 -3931396 - AluJo SINE Alu -13 299 12 2438 231 28 71 chr21 30976174 30976565 -3931005 - L1MD1 LINE L1 -1716 4430 4023 1392 127 0 9 chr21 30976652 30976865 -3930705 - MER2 DNA MER2_type -133 211 1 4310 264 21 22 chr21 30976865 30977271 -3930299 - L1MD1 LINE L1 -2111 4035 3630 2163 120 3 3 chr21 30977271 30977572 -3929998 + AluSx SINE Alu 3 303 -9 4310 264 21 22 chr21 30977572 30978558 -3929012 - L1MD1 LINE L1 -2516 3630 2645 277 317 39 10 chr21 30978874 30978978 -3928592 - MIR3 SINE MIR -3 205 99 25 31 0 0 chr21 30978980 30979012 -3928558 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr21 30979072 30979097 -3928473 + AT_rich Low_complexity Low_complexity 1 25 0 270 250 38 0 chr21 30979398 30979478 -3928092 - L1ME LINE L1 -477 5644 5562 2516 66 3 3 chr21 30979504 30979808 -3927762 - AluSp SINE Alu -8 305 2 2447 66 13 0 chr21 30981184 30981487 -3926083 + AluSp SINE Alu 1 307 -6 1916 160 154 0 chr21 30982391 30982760 -3924810 + MSTB LTR MaLR 1 426 0 784 148 0 0 chr21 30983122 30983237 -3924333 - AluSg/x SINE Alu -10 300 186 327 215 111 54 chr21 30983309 30983465 -3924105 - MIR SINE MIR -34 174 3 699 218 15 34 chr21 30983555 30983761 -3923809 - LTR67 LTR ERVL -19 538 337 1237 263 21 50 chr21 30983935 30984410 -3923160 - MLT1C LTR MaLR -6 461 1 310 388 0 6 chr21 30985782 30985960 -3921610 + (CA)n Simple_repeat Simple_repeat 2 178 0 192 77 0 0 chr21 30985992 30986018 -3921552 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2062 121 10 0 chr21 30986020 30986309 -3921261 - AluSq SINE Alu -21 292 1 2101 116 16 16 chr21 30987232 30987542 -3920028 - AluSq SINE Alu -3 310 1 21 57 0 0 chr21 30988566 30988601 -3918969 + AT_rich Low_complexity Low_complexity 1 35 0 440 171 23 17 chr21 30988620 30988708 -3918862 + (TAGA)n Simple_repeat Simple_repeat 3 89 -89 1962 169 0 16 chr21 30988708 30989022 -3918548 + AluJb SINE Alu 1 309 -3 440 171 23 17 chr21 30989022 30989108 -3918462 + (TAGA)n Simple_repeat Simple_repeat 89 178 0 480 62 0 0 chr21 30989113 30989177 -3918393 + (TGGA)n Simple_repeat Simple_repeat 3 66 0 974 104 17 6 chr21 30989178 30989351 -3918219 + (TAGA)n Simple_repeat Simple_repeat 4 178 0 350 252 52 71 chr21 30989385 30989540 -3918030 + L1ME4a LINE L1 5967 6118 -3 436 304 53 53 chr21 30990433 30990732 -3916838 - MARNA DNA Mariner -273 313 15 4700 98 35 25 chr21 30990746 30991009 -3916561 - LTR8 LTR ERV1 0 691 432 2520 75 0 3 chr21 30991009 30991316 -3916254 - AluSg SINE Alu -4 306 1 4700 98 35 25 chr21 30991316 30991736 -3915834 - LTR8 LTR ERV1 -259 432 1 2307 88 0 7 chr21 30992622 30992916 -3914654 + AluSx SINE Alu 1 292 -20 1086 216 36 99 chr21 30994820 30995236 -3912334 - MLT1B LTR MaLR 0 390 1 2199 125 0 0 chr21 30998407 30998712 -3908858 + AluSx SINE Alu 1 305 -7 912 142 15 0 chr21 30998730 30998864 -3908706 + AluJo SINE Alu 1 136 -176 2121 81 0 69 chr21 30999116 30999436 -3908134 - AluSc SINE Alu -11 298 1 2057 89 48 14 chr21 31000296 31000588 -3906982 - AluSq SINE Alu -11 302 1 2075 109 24 0 chr21 31000823 31001116 -3906454 - AluSx SINE Alu -12 300 1 2112 120 3 0 chr21 31001557 31001857 -3905713 - AluSx SINE Alu -11 301 1 636 244 63 1 chr21 31001879 31002070 -3905500 - L1ME1 LINE L1 -6 6160 5948 2231 100 10 3 chr21 31002132 31002443 -3905127 + AluSq SINE Alu 1 313 0 312 113 0 113 chr21 31003119 31003151 -3904419 + FLAM SINE Alu 63 84 -218 2145 115 71 3 chr21 31003151 31003490 -3904080 + THE1B LTR MaLR 1 362 -2 312 113 0 113 chr21 31003490 31003528 -3904042 + FLAM SINE Alu 84 125 -177 668 198 31 7 chr21 31006038 31006208 -3901362 - MLT1B LTR MaLR 0 390 196 543 223 12 0 chr21 31007922 31008423 -3899147 + (TG)n Simple_repeat Simple_repeat 1 507 0 295 296 88 24 chr21 31011000 31011125 -3896445 - MIR SINE MIR -41 221 89 2319 94 3 3 chr21 31011235 31011544 -3896026 - AluSx SINE Alu -3 309 1 892 241 67 49 chr21 31011816 31012206 -3895364 + MLT1C LTR MaLR 65 461 -6 1071 150 7 0 chr21 31013531 31013807 -3893763 + (TGGA)n Simple_repeat Simple_repeat 1 278 0 1328 183 60 42 chr21 31014612 31014896 -3892674 + AluJo SINE Alu 14 302 -10 585 222 0 4 chr21 31017759 31018016 -3889554 + (CA)n Simple_repeat Simple_repeat 1 255 0 570 256 0 0 chr21 31018080 31018360 -3889210 + (CA)n Simple_repeat Simple_repeat 1 280 0 220 188 0 42 chr21 31020311 31020359 -3887211 + L2 LINE L2 3212 3257 -15 2134 119 7 0 chr21 31021189 31021483 -3886087 - AluSq SINE Alu -17 296 1 2169 96 7 3 chr21 31021540 31021831 -3885739 + AluSx SINE Alu 11 302 -10 2247 70 20 0 chr21 31022077 31022375 -3885195 + AluY SINE Alu 1 304 -7 1975 57 102 8 chr21 31022375 31022666 -3884904 + AluY SINE Alu 1 317 0 182 37 37 0 chr21 31022690 31022717 -3884853 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 2277 97 0 0 chr21 31023151 31023449 -3884121 + AluSx SINE Alu 1 298 -14 2324 88 0 0 chr21 31023490 31023787 -3883783 - AluSg SINE Alu -9 301 5 2267 43 72 0 chr21 31025400 31025677 -3881893 - AluY SINE Alu -14 297 1 6076 36 1 7 chr21 31027067 31027817 -3879753 + SVA Other Other 665 1386 0 683 219 70 0 chr21 31028110 31028297 -3879273 + MLT1B LTR MaLR 1 200 -190 210 37 0 0 chr21 31028577 31028604 -3878966 + (TC)n Simple_repeat Simple_repeat 2 28 0 195 129 0 0 chr21 31028648 31028679 -3878891 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 345 121 0 0 chr21 31028679 31028737 -3878833 + Alu SINE Alu 243 300 0 2614 157 48 35 chr21 31028705 31028847 -3878723 - LTR38B LTR ERV1 -35 575 436 2100 126 0 3 chr21 31028847 31029149 -3878421 + AluSx SINE Alu 1 301 -11 2614 157 48 35 chr21 31029149 31029574 -3877996 - LTR38B LTR ERV1 -174 436 1 414 165 5 58 chr21 31030501 31030689 -3876881 + CT-rich Low_complexity Low_complexity 1 178 0 302 247 47 82 chr21 31031654 31031791 -3875779 - L1P LINE L1 -709 5422 5291 2326 93 0 3 chr21 31031791 31032103 -3875467 - AluSx SINE Alu 0 312 2 302 247 47 82 chr21 31032103 31032135 -3875435 - L1P LINE L1 -840 5291 5259 563 175 119 7 chr21 31032210 31032353 -3875217 + MLT1A1 LTR MaLR 10 168 -197 642 272 84 48 chr21 31032578 31033041 -3874529 - MLT1D LTR MaLR -5 500 21 845 114 0 43 chr21 31033128 31033480 -3874090 + (CACCC)n Simple_repeat Simple_repeat 1 336 0 423 200 21 0 chr21 31035609 31035704 -3871866 - MLT1H LTR MaLR 0 549 453 230 258 108 80 chr21 31035814 31035998 -3871572 - MLT1H LTR MaLR -259 290 98 2121 102 30 13 chr21 31035998 31036301 -3871269 + AluSx SINE Alu 1 308 -4 230 258 108 80 chr21 31036301 31036329 -3871241 - MLT1H LTR MaLR -451 98 72 387 0 0 0 chr21 31036352 31036395 -3871175 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1947 122 53 26 chr21 31036583 31036886 -3870684 + AluSx SINE Alu 1 311 -1 775 207 101 0 chr21 31037448 31037617 -3869953 + AluSg/x SINE Alu 125 310 0 34 0 0 0 chr21 31037641 31037675 -3869895 + AT_rich Low_complexity Low_complexity 1 34 0 1414 118 10 0 chr21 31037677 31037880 -3869690 + AluSx SINE Alu 1 205 -107 1341 170 44 0 chr21 31037880 31038151 -3869419 + L1PA16 LINE L1 5808 6090 -76 880 75 34 54 chr21 31038151 31038297 -3869273 + L1PA16 LINE L1 6023 6166 0 2214 82 3 7 chr21 31038408 31038699 -3868871 + AluSq SINE Alu 1 290 -23 292 200 0 0 chr21 31038928 31038988 -3868582 - L1M4 LINE L1 -878 5268 5209 866 244 36 0 chr21 31039172 31039397 -3868173 - L1MC/D LINE L1 -601 5758 5526 656 276 11 42 chr21 31039401 31039558 -3868012 - L1MC/D LINE L1 -3311 2835 2688 1836 160 19 3 chr21 31039558 31039865 -3867705 + AluJb SINE Alu 1 312 0 656 276 11 42 chr21 31039865 31039972 -3867598 - L1MC/D LINE L1 -3458 2688 2579 319 261 9 18 chr21 31040133 31040244 -3867326 + LTR33 LTR ERVL 410 519 -2 661 240 118 0 chr21 31040358 31040562 -3867008 + L1MCc LINE L1 19 246 -6177 1100 163 4 48 chr21 31040597 31040824 -3866746 - AluJo SINE Alu -2 310 94 792 93 0 0 chr21 31040824 31040931 -3866639 + AluSg/x SINE Alu 197 303 -6 689 93 9 0 chr21 31040931 31041039 -3866531 - MER31A LTR ERV1 -371 114 6 731 282 91 28 chr21 31041043 31041112 -3866458 + L1MCc LINE L1 226 289 -6134 2327 73 10 0 chr21 31041112 31041413 -3866157 + AluSg SINE Alu 1 304 -6 731 282 91 28 chr21 31041413 31041527 -3866043 + L1MCc LINE L1 289 394 -6029 2257 110 0 0 chr21 31041527 31041828 -3865742 + AluSg SINE Alu 1 301 -9 731 282 91 28 chr21 31041828 31042004 -3865566 + L1MCc LINE L1 394 609 -5814 497 97 0 0 chr21 31042048 31042120 -3865450 - MER4B LTR ERV1 -28 582 511 1198 100 0 6 chr21 31042139 31042299 -3865271 + AluSx SINE Alu 1 159 -153 1001 102 28 121 chr21 31042300 31042515 -3865055 - MER4A LTR ERV1 -98 566 372 356 162 0 0 chr21 31042573 31042641 -3864929 - MER4A LTR ERV1 -566 98 31 2122 100 3 3 chr21 31042655 31042944 -3864626 - AluSx SINE Alu -22 290 2 311 73 18 18 chr21 31042945 31043000 -3864570 - MER4A LTR ERV1 -609 55 1 638 219 112 58 chr21 31043243 31043503 -3864067 + L1MCc LINE L1 991 1264 -5159 334 135 0 0 chr21 31043676 31043728 -3863842 - MER83B LTR ERV1 -2 371 320 2210 94 0 16 chr21 31043728 31043904 -3863666 + AluSx SINE Alu 1 171 -141 3919 61 20 10 chr21 31043904 31044412 -3863158 + LTR10D LTR ERV1 1 513 0 2210 94 0 16 chr21 31044412 31044544 -3863026 + AluSx SINE Alu 171 304 -8 942 121 19 48 chr21 31044544 31044581 -3862989 - MER83B LTR ERV1 -48 330 293 2174 114 0 3 chr21 31044581 31044879 -3862691 + AluSx SINE Alu 1 297 -15 942 121 19 48 chr21 31044879 31045130 -3862440 - MER83B LTR ERV1 -85 293 1 504 320 6 6 chr21 31045133 31045175 -3862395 - L1M4 LINE L1 -3727 2419 2378 2077 189 40 64 chr21 31045175 31045561 -3862009 - MER65A LTR ERV1 0 445 70 2103 107 42 0 chr21 31045561 31045850 -3861720 - AluSp SINE Alu -12 301 1 2077 189 40 64 chr21 31045850 31045919 -3861651 - MER65A LTR ERV1 -375 70 1 504 320 6 6 chr21 31045919 31046032 -3861538 - L1M4 LINE L1 -3767 2379 2264 617 121 0 10 chr21 31046032 31046131 -3861439 + MER4A LTR ERV1 1 98 -566 1558 147 3 79 chr21 31046131 31046505 -3861065 + MER4A LTR ERV1 261 664 0 385 293 99 59 chr21 31046565 31046752 -3860818 + HAL1 LINE L1 1003 1206 -1301 4470 127 37 54 chr21 31046752 31047072 -3860498 - MER4E LTR ERV1 0 779 455 2423 68 3 3 chr21 31047072 31047368 -3860202 + AluY SINE Alu 1 296 -15 4470 127 37 54 chr21 31047368 31047840 -3859730 - MER4E LTR ERV1 -324 455 1 385 293 99 59 chr21 31047840 31047925 -3859645 + HAL1 LINE L1 1206 1286 -1221 323 167 0 0 chr21 31047940 31047988 -3859582 + AluJo SINE Alu 1 48 -254 1230 191 116 55 chr21 31047992 31048474 -3859096 - LTR10A LTR ERV1 0 609 1 1463 177 8 8 chr21 31048475 31048724 -3858846 + AluJo SINE Alu 50 298 -14 261 0 0 0 chr21 31048952 31048981 -3858589 + (TGG)n Simple_repeat Simple_repeat 1 29 0 2092 120 3 7 chr21 31048981 31049265 -3858305 - AluSp SINE Alu -27 286 4 3273 69 22 22 chr21 31049398 31049846 -3857724 - LTR7 LTR ERV1 -2 448 1 2375 88 48 13 chr21 31049846 31050223 -3857347 - HERVH LTR ERV1 0 7713 7324 1378 117 0 0 chr21 31050223 31050428 -3857142 - HERVH LTR ERV1 -1894 5819 5615 2896 131 10 2 chr21 31050463 31051072 -3856498 - HERVH LTR ERV1 -2564 5149 4488 5660 107 2 2 chr21 31051074 31051928 -3855642 - HERVH LTR ERV1 -3720 3993 3140 14762 97 13 23 chr21 31051907 31054681 -3852889 - HERVH LTR ERV1 -4718 2995 1 3174 83 22 20 chr21 31054683 31055130 -3852440 - LTR7 LTR ERV1 -2 448 1 796 198 21 11 chr21 31055137 31055324 -3852246 + MER67C LTR ERV1 519 707 -3 1776 243 80 17 chr21 31055414 31055940 -3851630 - MER89 LTR ERV1 0 559 1 267 188 30 109 chr21 31055958 31055973 -3851597 - MLT1J LTR MaLR -201 310 295 2946 126 50 23 chr21 31055973 31056450 -3851120 - LTR2B LTR ERV1 0 490 1 3948 115 75 3 chr21 31056454 31057055 -3850515 + LTR9B LTR ERV1 1 644 0 267 188 30 109 chr21 31057055 31057135 -3850435 - MLT1J LTR MaLR -219 292 218 279 241 0 0 chr21 31058180 31058263 -3849307 + (CA)n Simple_repeat Simple_repeat 1 83 0 546 241 0 0 chr21 31058289 31058455 -3849115 + (CA)n Simple_repeat Simple_repeat 1 166 0 2162 115 0 30 chr21 31059298 31059603 -3847967 + AluSx SINE Alu 1 296 -16 305 204 129 11 chr21 31059611 31059704 -3847866 + MIR SINE MIR 100 203 -59 2052 126 27 0 chr21 31059815 31060116 -3847454 - AluJo SINE Alu -3 309 1 2314 133 92 45 chr21 31060293 31060758 -3846812 + LTR21A LTR ERV1 3 489 -16 1206 118 27 11 chr21 31060789 31060976 -3846594 - MER4B LTR ERV1 -19 591 402 3137 53 19 5 chr21 31060985 31061500 -3846070 + LTR10C LTR ERV1 1 589 -2 343 115 19 0 chr21 31061567 31061619 -3845951 - MER4A LTR ERV1 -351 313 261 466 131 30 40 chr21 31061619 31061718 -3845852 - MER4A LTR ERV1 -566 98 1 2704 113 45 14 chr21 31061719 31062161 -3845409 - MER4A-int LTR ERV1 0 6598 6143 8796 90 56 19 chr21 31062175 31062929 -3844641 - MER4A-int LTR ERV1 -1185 5413 4688 2049 152 3 0 chr21 31062929 31063225 -3844345 + AluSx SINE Alu 2 298 -14 8796 90 56 19 chr21 31063225 31063915 -3843655 - MER4A-int LTR ERV1 -1910 4688 3916 1168 131 58 32 chr21 31063901 31064311 -3843259 - MER4A-int LTR ERV1 -3267 3331 1867 1130 130 12 0 chr21 31064311 31064472 -3843098 - AluSp SINE Alu -23 290 128 1908 144 14 3 chr21 31064484 31064769 -3842801 - AluSx SINE Alu -17 295 8 287 160 0 0 chr21 31064770 31064820 -3842750 + MSTB LTR MaLR 377 426 0 318 253 11 44 chr21 31064830 31064921 -3842649 + MIR SINE MIR 145 232 -30 330 213 149 0 chr21 31064947 31065041 -3842529 - MLT1J LTR MaLR -163 348 241 2143 148 81 27 chr21 31065164 31065486 -3842084 - MSTC LTR MaLR 0 428 78 2510 93 0 0 chr21 31065486 31065798 -3841772 - AluSx SINE Alu 0 312 1 2143 148 81 27 chr21 31065798 31065881 -3841689 - MSTC LTR MaLR -350 78 1 506 274 35 15 chr21 31066537 31066796 -3840774 + L1M4 LINE L1 2171 2434 -3712 203 218 73 0 chr21 31066874 31066929 -3840641 + CT-rich Low_complexity Low_complexity 3 61 0 822 239 110 29 chr21 31067113 31067385 -3840185 + MLT1A2 LTR MaLR 3 296 -78 1574 196 51 76 chr21 31067582 31068016 -3839554 + L1MC4a LINE L1 6442 6864 -944 5639 158 31 11 chr21 31068017 31068120 -3839450 + L1M1 LINE L1 14 114 -7451 2063 154 0 0 chr21 31068120 31068437 -3839133 + AluSx SINE Alu 1 312 0 5639 158 31 11 chr21 31068437 31069304 -3838266 + L1M1 LINE L1 114 1003 -6562 11492 121 26 19 chr21 31069311 31071140 -3836430 + L1M1 LINE L1 1114 2955 -4610 947 107 107 0 chr21 31071236 31071405 -3836165 + L1 LINE L1 2460 2646 -4919 3881 154 36 17 chr21 31071409 31072722 -3834848 + L1 LINE L1 2960 4295 -3270 811 112 0 32 chr21 31072722 31072847 -3834723 + AluSg/x SINE Alu 189 309 0 611 231 84 15 chr21 31072847 31073036 -3834534 + L1 LINE L1 4290 4494 -3071 2092 103 43 7 chr21 31073036 31073337 -3834233 + AluSx SINE Alu 1 312 0 611 231 84 15 chr21 31073337 31073403 -3834167 + L1 LINE L1 4494 4554 -3011 288 77 0 0 chr21 31073404 31073443 -3834127 + (GGAA)n Simple_repeat Simple_repeat 4 42 0 8418 159 27 14 chr21 31073443 31074903 -3832667 + L1 LINE L1 4450 5937 -1628 2193 120 0 0 chr21 31074903 31075194 -3832376 + AluSx SINE Alu 7 297 -15 8418 159 27 14 chr21 31075194 31075440 -3832130 + L1 LINE L1 5937 6178 -1387 250 200 0 0 chr21 31075440 31075480 -3832090 - Alu SINE Alu -260 42 3 6965 122 12 17 chr21 31075519 31075704 -3831866 - L1MA2 LINE L1 0 6304 6120 2322 93 3 0 chr21 31075704 31075993 -3831577 + AluSp SINE Alu 1 290 -23 198 0 0 0 chr21 31075997 31076019 -3831551 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 6965 122 12 17 chr21 31076019 31077076 -3830494 - L1MA2 LINE L1 -187 6117 5056 2051 122 20 3 chr21 31077076 31077246 -3830324 - AluSx SINE Alu -11 301 122 207 0 0 0 chr21 31077246 31077269 -3830301 + (TG)n Simple_repeat Simple_repeat 2 24 0 2051 122 20 3 chr21 31077269 31077394 -3830176 - AluSx SINE Alu -190 122 1 6965 122 12 17 chr21 31077394 31077437 -3830133 - L1MA2 LINE L1 -1248 5056 5014 1459 133 0 35 chr21 31077437 31077663 -3829907 - AluJb SINE Alu -2 310 93 6965 122 12 17 chr21 31077663 31077977 -3829593 - L1MA2 LINE L1 -1290 5014 4709 1280 273 37 58 chr21 31077978 31078546 -3829024 + L1MC4 LINE L1 7346 7901 -141 233 333 68 8 chr21 31078729 31078846 -3828724 - L2 LINE L2 0 3272 3149 2214 128 0 3 chr21 31078863 31079175 -3828395 - AluSx SINE Alu -1 311 1 2025 149 0 0 chr21 31079177 31079478 -3828092 - AluSx SINE Alu -9 303 3 2320 89 7 7 chr21 31079953 31080255 -3827315 - AluSx SINE Alu -10 302 1 704 239 44 55 chr21 31080260 31080497 -3827073 - L1ME LINE L1 -341 5823 5588 768 220 50 6 chr21 31080497 31080656 -3826914 - FRAM SINE Alu 0 166 1 704 239 44 55 chr21 31080656 31080690 -3826880 - L1ME LINE L1 -576 5588 5555 1828 128 62 14 chr21 31080722 31081010 -3826560 - AluSq SINE Alu -11 302 1 1546 115 10 5 chr21 31081048 31081257 -3826313 - AluSx SINE Alu -102 210 1 354 299 30 42 chr21 31081937 31082104 -3825466 - L1ME3A LINE L1 -107 6063 5899 1273 135 0 0 chr21 31082216 31082401 -3825169 + AluSc SINE Alu 125 309 0 478 252 28 0 chr21 31082403 31082546 -3825024 + L1MC4 LINE L1 7339 7485 -557 499 258 8 9 chr21 31082911 31083055 -3824515 - L1ME2 LINE L1 -10 6152 6010 207 162 0 0 chr21 31083314 31083351 -3824219 + (TG)n Simple_repeat Simple_repeat 1 37 0 453 139 178 20 chr21 31083761 31083862 -3823708 - FLAM_C SINE Alu -16 127 11 2210 258 52 50 chr21 31083870 31084491 -3823079 - L1MC4a LINE L1 -809 6999 6381 1519 101 55 0 chr21 31084491 31084709 -3822861 + MER30 DNA MER1_type 1 230 0 2210 258 52 50 chr21 31084709 31084788 -3822782 - L1MC4a LINE L1 -1427 6381 6304 1825 119 76 7 chr21 31084788 31085065 -3822505 - AluSx SINE Alu -16 296 1 2210 258 52 50 chr21 31085065 31085375 -3822195 - L1MC4a LINE L1 -1504 6304 5986 1984 113 17 31 chr21 31086967 31087258 -3820312 - AluSx SINE Alu -21 291 5 2174 97 17 3 chr21 31087290 31087578 -3819992 + AluSq SINE Alu 1 292 -21 442 175 50 0 chr21 31087578 31087658 -3819912 + FLAM_C SINE Alu 37 120 -23 270 191 26 33 chr21 31088742 31088894 -3818676 + (TG)n Simple_repeat Simple_repeat 1 151 0 454 263 34 6 chr21 31088950 31089125 -3818445 + (TG)n Simple_repeat Simple_repeat 1 180 0 484 227 47 20 chr21 31089143 31089693 -3817877 + (TG)n Simple_repeat Simple_repeat 1 564 0 312 163 0 0 chr21 31091715 31091764 -3815806 - Tigger5 DNA MER2_type 0 2323 2275 2004 146 17 3 chr21 31091958 31092129 -3815441 - AluJo SINE Alu -4 308 130 2055 114 50 4 chr21 31092129 31092410 -3815160 - AluSg SINE Alu -16 294 1 2004 146 17 3 chr21 31092410 31092532 -3815038 - AluJo SINE Alu -182 130 11 228 281 133 7 chr21 31092556 31092691 -3814879 + L1MEc LINE L1 1013 1164 -5232 537 217 32 21 chr21 31093700 31093889 -3813681 + L1ME3A LINE L1 2737 2927 -3219 470 297 36 0 chr21 31093932 31094097 -3813473 - MLT1F LTR MaLR -200 342 172 887 209 59 56 chr21 31094300 31094402 -3813168 + L1ME3A LINE L1 5582 5682 -488 1742 164 27 0 chr21 31094402 31094700 -3812870 + AluJo SINE Alu 1 306 -6 887 209 59 56 chr21 31094700 31094903 -3812667 + L1ME3A LINE L1 5682 5888 -282 310 261 127 49 chr21 31094945 31095087 -3812483 + L1ME3A LINE L1 5996 6148 -22 893 201 18 6 chr21 31095100 31095269 -3812301 + AluJb SINE Alu 119 289 -23 2054 79 3 56 chr21 31095295 31095600 -3811970 + AluSx SINE Alu 5 293 -19 259 183 135 39 chr21 31096282 31096386 -3811184 - MER58 DNA MER1_type -98 117 4 311 208 33 49 chr21 31097580 31097763 -3809807 + (CA)n Simple_repeat Simple_repeat 1 180 0 378 284 9 0 chr21 31099249 31099365 -3808205 + MLT1E LTR MaLR 469 585 -8 2422 61 3 0 chr21 31101185 31101482 -3806088 + AluSp SINE Alu 1 298 -15 364 303 56 0 chr21 31102397 31102539 -3805031 + MLT1F LTR MaLR 392 541 -1 790 150 189 0 chr21 31103542 31103695 -3803875 + AluSg/x SINE Alu 115 296 -14 853 196 17 17 chr21 31104946 31105119 -3802451 - FAM SINE Alu -2 173 1 264 122 0 0 chr21 31105317 31105358 -3802212 + (CA)n Simple_repeat Simple_repeat 1 41 0 863 334 54 27 chr21 31106144 31106368 -3801202 + HAL1 LINE L1 979 1216 -1291 1660 156 31 7 chr21 31106368 31106657 -3800913 + AluSx SINE Alu 1 296 -16 863 334 54 27 chr21 31106657 31106767 -3800803 + HAL1 LINE L1 1216 1322 -1185 730 177 15 0 chr21 31107685 31107815 -3799755 + FLAM_A SINE Alu 2 133 0 235 277 15 31 chr21 31109320 31109385 -3798185 - L2 LINE L2 0 3272 3209 2035 92 41 14 chr21 31109581 31109874 -3797696 + AluSg SINE Alu 1 301 -9 234 91 0 0 chr21 31109894 31109927 -3797643 + (GGGA)n Simple_repeat Simple_repeat 1 33 0 2569 42 0 6 chr21 31112376 31112689 -3794881 + AluY SINE Alu 1 311 0 2198 118 0 0 chr21 31115660 31115965 -3791605 + AluSx SINE Alu 1 305 -7 1199 208 40 0 chr21 31116026 31116252 -3791318 - MER46A DNA MER2_type 0 236 2 808 161 0 15 chr21 31116281 31116411 -3791159 - FLAM_C SINE Alu -10 133 6 509 231 195 0 chr21 31117190 31117385 -3790185 + MER77 LTR ERV1 145 377 -228 313 250 12 24 chr21 31117682 31117766 -3789804 + L1ME4a LINE L1 6011 6093 -28 2187 93 0 13 chr21 31118278 31118580 -3788990 + AluSq SINE Alu 1 298 -15 2132 126 0 0 chr21 31118620 31118922 -3788648 + AluSx SINE Alu 1 302 -10 2118 110 3 7 chr21 31119057 31119357 -3788213 + AluSq SINE Alu 1 299 -14 1812 178 67 29 chr21 31119480 31119856 -3787714 + MLT1B LTR MaLR 1 390 0 2083 111 3 17 chr21 31120542 31120840 -3786730 - AluSq SINE Alu -19 294 1 2046 134 3 10 chr21 31120879 31121193 -3786377 + AluSx SINE Alu 1 312 0 2128 110 0 7 chr21 31121204 31121503 -3786067 + AluSq SINE Alu 1 297 -16 239 214 0 0 chr21 31122585 31122627 -3784943 + AluJo SINE Alu 1 42 -91 7478 71 8 1 chr21 31122627 31123677 -3783893 + MER11C LTR ERVK 1 1057 -14 1518 162 11 25 chr21 31123709 31123823 -3783747 + AluJo SINE Alu 30 144 -168 2172 86 0 17 chr21 31123823 31124114 -3783456 + AluSc SINE Alu 3 288 -21 1518 162 11 25 chr21 31124114 31124283 -3783287 + AluJo SINE Alu 144 309 -3 1786 139 52 7 chr21 31124468 31124755 -3782815 - AluSx SINE Alu -11 301 2 2050 135 0 0 chr21 31124768 31125065 -3782505 - AluSx SINE Alu -15 297 1 1971 122 24 0 chr21 31125375 31125663 -3781907 - AluSp SINE Alu -18 295 1 2132 128 3 0 chr21 31125690 31125994 -3781576 - AluSx SINE Alu -7 305 1 2443 55 10 3 chr21 31126314 31126621 -3780949 + AluY SINE Alu 1 309 -2 1675 120 0 4 chr21 31128454 31128696 -3778874 + AluSx SINE Alu 56 296 -16 2055 55 88 4 chr21 31129484 31129757 -3777813 - AluY SINE Alu -15 296 1 180 0 0 0 chr21 31129950 31129970 -3777600 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2070 104 14 0 chr21 31130352 31130640 -3776930 - AluSq SINE Alu -9 304 13 848 68 0 0 chr21 31130643 31130746 -3776824 - AluSp SINE Alu -210 103 1 2237 106 3 0 chr21 31130832 31131133 -3776437 + AluSq SINE Alu 1 302 -11 2102 126 0 13 chr21 31131232 31131368 -3776202 + AluSx SINE Alu 1 137 -175 2346 97 0 0 chr21 31131368 31131677 -3775893 + AluSx SINE Alu 1 309 -3 2102 126 0 13 chr21 31131677 31131849 -3775721 + AluSx SINE Alu 137 305 -7 1089 251 102 29 chr21 31131986 31132397 -3775173 + MLT1C LTR MaLR 1 441 -26 1694 153 98 28 chr21 31132397 31132795 -3774775 - L1MB7 LINE L1 -65 6119 5694 254 151 94 0 chr21 31132798 31132851 -3774719 - L1MB7 LINE L1 -543 5641 5584 477 100 0 0 chr21 31132866 31132926 -3774644 + AluSc SINE Alu 198 257 -52 2164 102 0 0 chr21 31132926 31133210 -3774360 + AluSg SINE Alu 9 292 -18 495 217 0 7 chr21 31133212 31133318 -3774252 - L1MB7 LINE L1 -540 5581 5493 1976 150 3 0 chr21 31133318 31133625 -3773945 - AluSx SINE Alu -2 310 3 495 217 0 7 chr21 31133625 31133646 -3773924 - L1MB7 LINE L1 -628 5493 5473 2120 90 14 0 chr21 31133880 31134168 -3773402 + AluSq SINE Alu 1 292 -21 1044 247 0 9 chr21 31134280 31134503 -3773067 - AluJo SINE Alu -46 266 46 2254 97 7 0 chr21 31134508 31134808 -3772762 - AluSx SINE Alu -10 302 1 22 0 0 0 chr21 31134920 31134942 -3772628 + AT_rich Low_complexity Low_complexity 1 22 0 251 331 65 0 chr21 31134961 31135115 -3772455 - L1M4 LINE L1 -1751 4395 4232 355 174 10 41 chr21 31135249 31135347 -3772223 - Tigger2 DNA MER2_type -2379 339 245 2235 101 3 0 chr21 31135536 31135843 -3771727 - AluSp SINE Alu -5 308 1 818 148 14 28 chr21 31135846 31135988 -3771582 - FLAM_C SINE Alu -1 142 3 2127 165 39 38 chr21 31135999 31136270 -3771300 - Tigger2 DNA MER2_type -2183 535 261 1649 99 0 17 chr21 31136270 31136503 -3771067 + AluSg/x SINE Alu 82 310 0 2127 165 39 38 chr21 31136503 31136765 -3770805 - Tigger2 DNA MER2_type -2457 261 1 1869 145 0 3 chr21 31136828 31137136 -3770434 + AluJb SINE Alu 1 307 0 2184 109 0 10 chr21 31137251 31137555 -3770015 - AluSx SINE Alu -11 301 1 1599 93 0 0 chr21 31137629 31137834 -3769736 - AluSx SINE Alu -107 205 1 408 339 108 11 chr21 31137928 31138188 -3769382 - L1MEd LINE L1 -5666 453 169 616 160 0 0 chr21 31138299 31138399 -3769171 - AluSg/x SINE Alu -12 297 198 772 224 41 0 chr21 31138493 31138640 -3768930 + FRAM SINE Alu 6 158 -18 2174 85 3 10 chr21 31138805 31139098 -3768472 + AluSg SINE Alu 1 291 -19 2081 112 3 20 chr21 31139592 31139895 -3767675 + AluSx SINE Alu 1 298 -14 2231 92 3 0 chr21 31140227 31140519 -3767051 + AluSx SINE Alu 1 293 -19 2401 63 0 13 chr21 31140523 31140838 -3766732 + AluY SINE Alu 1 311 0 1806 114 7 29 chr21 31142478 31142751 -3764819 + AluSx SINE Alu 1 267 -45 21 0 0 0 chr21 31142751 31142772 -3764798 + AT_rich Low_complexity Low_complexity 1 21 0 711 62 32 35 chr21 31142863 31143086 -3764484 + (TA)n Simple_repeat Simple_repeat 1 222 0 26 0 0 0 chr21 31143087 31143113 -3764457 + AT_rich Low_complexity Low_complexity 1 26 0 660 177 0 46 chr21 31143113 31143243 -3764327 - AluSg/x SINE Alu -21 289 166 229 225 42 70 chr21 31143415 31143486 -3764084 + L2 LINE L2 3241 3309 -4 2104 121 33 13 chr21 31143628 31143752 -3763818 + AluSx SINE Alu 1 121 -191 2065 143 7 3 chr21 31143752 31144052 -3763518 + AluSx SINE Alu 1 301 -11 2104 121 33 13 chr21 31144052 31144233 -3763337 + AluSx SINE Alu 121 312 0 2055 118 40 20 chr21 31144527 31144703 -3762867 - AluSx SINE Alu -2 310 124 2525 63 17 0 chr21 31144703 31145002 -3762568 - AluY SINE Alu -7 304 1 2055 118 40 20 chr21 31145002 31145129 -3762441 - AluSx SINE Alu -188 124 1 1347 146 48 71 chr21 31145129 31145397 -3762173 + AluJo SINE Alu 27 288 -24 333 0 0 0 chr21 31145958 31145995 -3761575 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 1424 92 0 0 chr21 31146050 31146224 -3761346 - AluY SINE Alu -137 174 1 2288 106 0 0 chr21 31146235 31146527 -3761043 - AluY SINE Alu -19 292 1 1061 153 0 44 chr21 31146815 31146998 -3760572 - FRAM SINE Alu -1 175 1 1704 219 0 3 chr21 31147012 31147322 -3760248 - AluJo SINE Alu -3 309 1 2200 99 0 26 chr21 31147826 31147990 -3759580 - AluSp SINE Alu -18 295 141 2363 95 0 0 chr21 31147990 31148294 -3759276 - AluSc SINE Alu -5 304 1 2200 99 0 26 chr21 31148294 31148432 -3759138 - AluSp SINE Alu -172 141 1 1808 181 0 13 chr21 31148467 31148765 -3758805 + AluJb SINE Alu 1 294 -18 2118 133 0 3 chr21 31148773 31149073 -3758497 + AluSx SINE Alu 3 301 -11 2199 107 0 14 chr21 31149712 31150003 -3757567 + AluSq SINE Alu 6 292 -21 1150 135 0 22 chr21 31150003 31150177 -3757393 + AluSg/x SINE Alu 133 304 -6 657 269 40 53 chr21 31150203 31150430 -3757140 - MIR SINE MIR -33 229 6 23 42 0 21 chr21 31150461 31150479 -3757091 + AT_rich Low_complexity Low_complexity 1 18 -29 2436 89 3 6 chr21 31150479 31150792 -3756778 + AluSp SINE Alu 2 313 0 23 42 0 21 chr21 31150792 31150821 -3756749 + AT_rich Low_complexity Low_complexity 18 47 0 1642 128 44 24 chr21 31151290 31151587 -3755983 + MER2 DNA MER2_type 1 303 -41 2118 108 30 10 chr21 31153040 31153337 -3754233 - AluSx SINE Alu -9 303 1 2314 99 0 0 chr21 31153348 31153640 -3753930 - AluSc SINE Alu -17 292 1 2233 99 3 0 chr21 31154056 31154366 -3753204 - AluSq SINE Alu 0 312 2 2088 137 0 0 chr21 31154415 31154715 -3752855 - AluSx SINE Alu -12 300 1 1700 146 24 34 chr21 31155846 31156000 -3751570 - AluJb SINE Alu -20 292 141 1984 156 7 3 chr21 31156000 31156302 -3751268 - AluSx SINE Alu -9 303 1 1700 146 24 34 chr21 31156302 31156442 -3751128 - AluJb SINE Alu -171 141 1 2311 99 0 3 chr21 31156576 31156870 -3750700 + AluSx SINE Alu 1 293 -19 2452 103 0 0 chr21 31157681 31157993 -3749577 - AluSx SINE Alu 0 312 1 2010 127 13 23 chr21 31158237 31158536 -3749034 - AluSg SINE Alu -14 296 1 2057 122 14 0 chr21 31158595 31158882 -3748688 + AluSq SINE Alu 1 291 -22 2230 110 3 3 chr21 31159511 31159802 -3747768 + AluSx SINE Alu 1 291 -21 1080 170 194 0 chr21 31160002 31160255 -3747315 - AluJb SINE Alu 0 302 1 2163 123 3 0 chr21 31160510 31160803 -3746767 + AluSp SINE Alu 1 294 -19 2519 54 0 10 chr21 31161028 31161162 -3746408 + AluY SINE Alu 1 135 -176 2593 62 0 0 chr21 31161162 31161466 -3746104 + AluY SINE Alu 1 304 -7 2519 54 0 10 chr21 31161466 31161625 -3745945 + AluY SINE Alu 135 291 -20 21 0 0 0 chr21 31161625 31161646 -3745924 + AT_rich Low_complexity Low_complexity 1 21 0 258 281 116 82 chr21 31161829 31162096 -3745474 - L2 LINE L2 -12 3260 2985 852 179 7 0 chr21 31162277 31162422 -3745148 - AluSq/x SINE Alu -161 152 7 613 303 50 35 chr21 31162454 31162555 -3745015 + HAL1b LINE L1 570 668 -680 2370 105 3 0 chr21 31162555 31162859 -3744711 + AluSq SINE Alu 1 305 -8 613 303 50 35 chr21 31162859 31163100 -3744470 + HAL1b LINE L1 668 917 -431 2148 148 0 0 chr21 31163138 31163448 -3744122 + AluSx SINE Alu 1 310 -2 704 177 15 0 chr21 31163457 31163587 -3743983 + FLAM_C SINE Alu 1 132 -1 296 114 0 0 chr21 31163753 31163797 -3743773 + Alu SINE Alu 1 44 -258 2336 104 0 0 chr21 31163797 31164095 -3743475 + AluY SINE Alu 1 298 -13 497 240 16 16 chr21 31164095 31164220 -3743350 - LTR23 LTR ERV1 -20 417 293 1849 158 10 10 chr21 31164284 31164587 -3742983 - AluSx SINE Alu -9 303 1 626 83 0 10 chr21 31164607 31164703 -3742867 - AluSg SINE Alu -14 295 201 1063 108 0 0 chr21 31164704 31164834 -3742736 - AluSg SINE Alu -180 130 1 304 207 0 0 chr21 31164861 31164919 -3742651 - FRAM SINE Alu -56 110 53 509 101 101 0 chr21 31164929 31165018 -3742552 + MER4A LTR ERV1 1 98 -566 945 153 7 97 chr21 31165018 31165293 -3742277 + MER4A LTR ERV1 261 569 -95 2237 126 75 5 chr21 31165293 31165665 -3741905 - MER48 LTR ERV1 0 398 1 5727 108 58 4 chr21 31165665 31166554 -3741016 - HERVH48 LTR ERV1 0 6671 5794 35266 113 33 28 chr21 31167659 31171010 -3736560 - HERVH48 LTR ERV1 -831 5823 2490 2678 46 0 0 chr21 31171010 31171317 -3736253 + AluY SINE Alu 1 307 -4 35266 113 33 28 chr21 31171317 31173500 -3734070 - HERVH48 LTR ERV1 -4164 2490 257 2395 84 0 3 chr21 31173500 31173796 -3733774 - AluSg SINE Alu -15 295 1 35266 113 33 28 chr21 31173796 31174054 -3733516 - HERVH48 LTR ERV1 -6397 257 2 2131 146 73 5 chr21 31174058 31174428 -3733142 - MER48 LTR ERV1 -3 395 1 480 146 0 12 chr21 31174429 31174511 -3733059 + MER4B LTR ERV1 511 591 -19 2478 58 0 0 chr21 31174511 31174803 -3732767 + AluY SINE Alu 1 292 -19 539 196 0 0 chr21 31174830 31174922 -3732648 - AluS SINE Alu -220 93 2 1737 130 0 118 chr21 31174933 31175272 -3732298 - AluSx SINE Alu -13 299 1 2645 33 3 3 chr21 31175303 31175607 -3731963 - AluY SINE Alu -7 304 1 852 157 100 39 chr21 31175608 31175838 -3731732 - LTR23 LTR ERV1 -132 305 62 1028 158 17 0 chr21 31175970 31176147 -3731423 - MER4A LTR ERV1 0 664 485 2378 93 3 0 chr21 31176147 31176458 -3731112 + AluSx SINE Alu 1 312 0 1129 81 24 23 chr21 31176458 31176791 -3730779 - MER4A LTR ERV1 -260 404 1 722 249 23 57 chr21 31176798 31176828 -3730742 + LTR8 LTR ERV1 1 30 -661 2654 55 3 0 chr21 31176828 31177138 -3730432 + AluY SINE Alu 1 311 0 722 249 23 57 chr21 31177138 31177372 -3730198 + LTR8 LTR ERV1 30 256 -435 2096 126 0 0 chr21 31177399 31177707 -3729863 - AluSg SINE Alu 0 313 6 192 111 0 0 chr21 31177720 31177756 -3729814 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2056 149 0 9 chr21 31177758 31178073 -3729497 - AluJb SINE Alu 0 312 1 491 183 10 19 chr21 31178104 31178180 -3729390 + LTR8A LTR ERV1 287 363 -364 2103 115 28 0 chr21 31178180 31178466 -3729104 - AluSq SINE Alu -17 296 3 491 183 10 19 chr21 31178466 31178493 -3729077 + LTR8A LTR ERV1 363 389 -338 1674 171 3 19 chr21 31178507 31178858 -3728712 - MER4A LTR ERV1 0 664 261 546 82 59 0 chr21 31178866 31178951 -3728619 - MER4A LTR ERV1 -574 90 1 343 167 20 118 chr21 31178961 31179063 -3728507 + LTR8A LTR ERV1 404 495 -232 689 211 0 0 chr21 31179079 31179207 -3728363 - AluJ SINE Alu -64 248 121 2044 108 47 0 chr21 31179220 31179497 -3728073 - AluSp SINE Alu -22 291 2 206 81 27 0 chr21 31179497 31179534 -3728036 + (TTG)n Simple_repeat Simple_repeat 1 38 0 2139 109 0 0 chr21 31179534 31179810 -3727760 - AluSx SINE Alu -31 281 6 944 121 7 14 chr21 31179814 31179955 -3727615 - AluJ SINE Alu -170 142 3 561 250 56 46 chr21 31179962 31180193 -3727377 + LTR8A LTR ERV1 449 684 -8 352 222 0 0 chr21 31180442 31180514 -3727056 - AluJ/FRAM SINE Alu 0 302 231 2444 146 73 24 chr21 31180515 31180982 -3726588 + LTR2B LTR ERV1 1 490 0 2790 83 8 0 chr21 31180982 31181366 -3726204 + Harlequin LTR ERV1 1 387 -6509 4408 70 3 3 chr21 31181359 31181946 -3725624 + Harlequin LTR ERV1 263 849 -6047 2289 41 3 28 chr21 31181931 31182251 -3725319 + Harlequin LTR ERV1 1036 1347 -5549 13154 125 10 1 chr21 31182243 31184253 -3723317 + Harlequin LTR ERV1 4247 6274 -622 1407 50 0 0 chr21 31184253 31184413 -3723157 + AluY SINE Alu 142 301 -10 3955 109 14 52 chr21 31184413 31184996 -3722574 + Harlequin LTR ERV1 6263 6820 -76 4532 34 4 0 chr21 31184996 31185552 -3722018 + LTR6B LTR ERV1 1 558 0 3955 109 14 52 chr21 31185552 31185627 -3721943 + Harlequin LTR ERV1 6820 6896 0 2564 138 62 23 chr21 31185627 31186097 -3721473 + LTR2B LTR ERV1 1 488 -2 239 229 0 0 chr21 31186100 31186147 -3721423 - AluJ/FRAM SINE Alu -70 232 186 521 112 0 84 chr21 31186147 31186254 -3721316 + MER4A LTR ERV1 1 98 -566 1645 124 6 75 chr21 31186254 31186610 -3720960 + MER4A LTR ERV1 261 650 -14 448 144 22 44 chr21 31186611 31186680 -3720890 - AluSc SINE Alu -107 202 134 773 155 0 0 chr21 31186680 31186809 -3720761 - AluJo/FLAM SINE Alu -173 129 1 448 144 22 44 chr21 31186809 31186829 -3720741 - AluSc SINE Alu -175 134 115 2087 132 0 3 chr21 31187342 31187637 -3719933 - AluJb SINE Alu -13 299 6 2515 86 0 6 chr21 31187820 31188134 -3719436 - AluSp SINE Alu -1 312 1 938 115 34 0 chr21 31188407 31188555 -3719015 - MER41B LTR ERV1 0 635 483 2280 97 10 0 chr21 31189032 31189330 -3718240 - AluSp SINE Alu -12 301 1 2071 143 0 0 chr21 31189333 31189627 -3717943 - AluSx SINE Alu -18 294 1 1372 78 0 5 chr21 31189793 31189984 -3717586 + MER41A LTR ERV1 1 190 -364 2232 98 10 3 chr21 31189985 31190281 -3717289 + AluSp SINE Alu 1 298 -15 324 240 40 40 chr21 31190281 31190381 -3717189 - MER92C LTR ERV1 -141 413 314 1852 178 3 0 chr21 31190460 31190753 -3716817 + AluJo SINE Alu 5 298 -14 2514 143 18 2 chr21 31190798 31191286 -3716284 + LTR10A LTR ERV1 1 547 -62 2062 141 0 0 chr21 31191708 31192007 -3715563 - AluY SINE Alu -12 299 1 36049 73 6 8 chr21 31192008 31196865 -3710705 - Harlequin LTR ERV1 -243 6653 1807 8237 68 18 20 chr21 31196852 31198014 -3709556 - Harlequin LTR ERV1 -5474 1422 263 1622 105 13 0 chr21 31198009 31198247 -3709323 - Harlequin LTR ERV1 -6511 385 145 227 242 65 0 chr21 31198269 31198331 -3709239 + SATR1 Satellite Satellite 190 255 -215 2203 187 144 26 chr21 31198366 31203960 -3703610 + SATR1 Satellite Satellite 1 6254 -32 3573 91 4 2 chr21 31203960 31204457 -3703113 - HERVE LTR ERV1 -2636 5177 4680 2290 99 0 7 chr21 31204648 31204952 -3702618 + AluSg SINE Alu 1 302 -8 1227 121 0 0 chr21 31204954 31205128 -3702442 + AluSg/x SINE Alu 130 303 -7 189 0 0 0 chr21 31205292 31205313 -3702257 + (T)n Simple_repeat Simple_repeat 1 21 0 245 108 15 169 chr21 31205326 31205391 -3702179 + LTR26B LTR ERV1 1 55 -476 1495 109 4 47 chr21 31205422 31205698 -3701872 + MER4A LTR ERV1 66 329 -335 1049 113 13 49 chr21 31205735 31205873 -3701697 + MER4A LTR ERV1 170 311 -442 2002 140 3 0 chr21 31205873 31206166 -3701404 + AluSx SINE Alu 1 294 -18 1049 113 13 49 chr21 31206166 31206290 -3701280 + MER4A LTR ERV1 311 602 -151 939 105 6 93 chr21 31206326 31206439 -3701131 + MER4B LTR ERV1 451 546 -64 1615 104 0 9 chr21 31206439 31206660 -3700910 + AluSg/x SINE Alu 83 301 -9 939 105 6 93 chr21 31206660 31206718 -3700852 + MER4B LTR ERV1 546 607 -3 1874 184 50 84 chr21 31206718 31206878 -3700692 + LTR26B LTR ERV1 48 212 -319 2246 110 3 0 chr21 31206878 31207169 -3700401 + AluSq SINE Alu 1 292 -21 1874 184 50 84 chr21 31207169 31207182 -3700388 + LTR26B LTR ERV1 212 224 -307 2292 50 57 0 chr21 31207182 31207464 -3700106 + AluY SINE Alu 1 298 -13 1874 184 50 84 chr21 31207464 31207790 -3699780 + LTR26B LTR ERV1 224 531 0 2285 84 11 3 chr21 31207955 31208272 -3699298 - AluSp SINE Alu 0 319 1 2246 121 3 3 chr21 31208568 31208873 -3698697 - AluSx SINE Alu -7 305 1 1681 137 23 19 chr21 31208879 31209135 -3698435 - AluJb SINE Alu -20 292 36 885 163 18 30 chr21 31209136 31209302 -3698268 - LTR8 LTR ERV1 -2 689 526 221 0 35 0 chr21 31209303 31209332 -3698238 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2005 107 33 4 chr21 31209333 31209605 -3697965 - AluSx SINE Alu -32 280 1 1565 117 5 0 chr21 31209605 31209819 -3697751 - AluSg/x SINE Alu -14 296 82 1102 96 0 0 chr21 31209819 31209954 -3697616 - AluSq/x SINE Alu -178 135 1 2459 92 0 0 chr21 31209965 31210271 -3697299 - AluY SINE Alu -5 306 1 2888 132 11 52 chr21 31210271 31210824 -3696746 - LTR8 LTR ERV1 -161 530 1 1044 143 51 0 chr21 31211380 31211410 -3696160 - AluSg/x SINE Alu -1 308 281 828 80 0 0 chr21 31211410 31211523 -3696047 + (TCCCC)n Simple_repeat Simple_repeat 4 116 0 1044 143 51 0 chr21 31211523 31211667 -3695903 - AluSg/x SINE Alu -28 281 125 2177 144 0 0 chr21 31211718 31212031 -3695539 + AluSq SINE Alu 1 313 0 774 178 8 0 chr21 31212060 31212189 -3695381 + AluSq/x SINE Alu 2 131 -182 2378 112 0 0 chr21 31212195 31212506 -3695064 + AluSx SINE Alu 1 311 -1 1555 156 69 91 chr21 31213122 31213540 -3694030 - MLT2D LTR ERVL 0 414 6 847 158 15 0 chr21 31213826 31213959 -3693611 - AluJo SINE Alu -177 135 1 1938 160 0 7 chr21 31214011 31214311 -3693259 + AluJb SINE Alu 1 298 -14 2071 154 0 3 chr21 31214343 31214642 -3692928 + AluSx SINE Alu 1 298 -14 2380 48 0 38 chr21 31214676 31214968 -3692602 - AluY SINE Alu -30 281 1 861 182 0 53 chr21 31214972 31215142 -3692428 - AluJo/FRAM SINE Alu -5 297 137 1033 152 0 19 chr21 31215144 31215326 -3692244 - AluSg/x SINE Alu 0 310 132 2413 96 0 10 chr21 31215326 31215493 -3692077 - AluSx SINE Alu -12 300 136 1961 116 94 0 chr21 31215493 31215769 -3691801 - AluSg SINE Alu -8 302 1 2413 96 0 10 chr21 31215769 31215904 -3691666 - AluSx SINE Alu -176 136 1 2317 105 3 0 chr21 31215989 31216285 -3691285 + AluSp SINE Alu 1 297 -16 1823 101 0 20 chr21 31216370 31216617 -3690953 + AluSq SINE Alu 1 242 -71 1434 78 21 21 chr21 31216779 31216972 -3690598 - AluSg1 SINE Alu -116 193 1 1168 90 0 28 chr21 31216972 31217149 -3690421 - MER41A LTR ERV1 -377 177 6 741 126 224 168 chr21 31217166 31217305 -3690265 - AluJb SINE Alu 0 302 172 2482 48 0 10 chr21 31217305 31217600 -3689970 + AluY SINE Alu 1 292 -19 741 126 224 168 chr21 31217600 31217746 -3689824 - AluJb SINE Alu -130 172 1 1461 111 0 37 chr21 31217756 31217872 -3689698 - AluSg/x SINE Alu -13 297 178 2442 175 103 29 chr21 31217872 31218397 -3689173 + LTR6A LTR ERV1 1 564 0 1461 111 0 37 chr21 31218397 31218451 -3689119 - AluSg/x SINE Alu -132 178 134 2254 114 7 7 chr21 31218451 31218759 -3688811 - AluSq SINE Alu -4 309 2 1461 111 0 37 chr21 31218759 31218803 -3688767 - AluSg/x SINE Alu -176 134 90 1626 145 0 0 chr21 31218803 31219031 -3688539 + AluSg/x SINE Alu 66 293 -17 2639 49 0 0 chr21 31219102 31219408 -3688162 - AluY SINE Alu -5 306 1 2799 122 44 0 chr21 31219650 31220086 -3687484 + MER41B LTR ERV1 1 455 -180 988 147 30 20 chr21 31220130 31220328 -3687242 + MER41B LTR ERV1 436 635 0 383 143 10 82 chr21 31220674 31220772 -3686798 + MER45A DNA AcHobo 38 128 -50 1190 156 0 0 chr21 31220778 31220970 -3686600 - MER41B LTR ERV1 -2 633 442 2416 164 18 11 chr21 31221000 31221098 -3686472 - MER41B LTR ERV1 -182 453 357 2165 109 7 10 chr21 31221098 31221400 -3686170 - AluSx SINE Alu -11 301 1 2416 164 18 11 chr21 31221400 31221751 -3685819 - MER41B LTR ERV1 -278 357 1 31 44 0 0 chr21 31222990 31223035 -3684535 + GC_rich Low_complexity Low_complexity 1 45 0 244 186 0 35 chr21 31223237 31223323 -3684247 + (CCG)n Simple_repeat Simple_repeat 2 84 0 244 215 15 0 chr21 31223376 31223441 -3684129 + G-rich Low_complexity Low_complexity 3 68 0 328 177 35 26 chr21 31223593 31223706 -3683864 + (CGGGG)n Simple_repeat Simple_repeat 2 115 0 6065 133 64 25 chr21 31224641 31226089 -3681481 - Tigger1 DNA MER2_type 0 2418 1027 2143 111 19 10 chr21 31226089 31226396 -3681174 - AluSq SINE Alu -3 310 1 6065 133 64 25 chr21 31226396 31226580 -3680990 - Tigger1 DNA MER2_type -1391 1027 852 1909 138 47 0 chr21 31226580 31226856 -3680714 - AluSx SINE Alu -23 289 1 6065 133 64 25 chr21 31226856 31226917 -3680653 - Tigger1 DNA MER2_type -1566 852 582 2442 103 7 0 chr21 31227025 31227335 -3680235 - AluSx SINE Alu 0 312 1 565 155 0 19 chr21 31227335 31227429 -3680141 - FLAM_A SINE Alu -176 135 42 1268 234 0 59 chr21 31227462 31227769 -3679801 - AluJo SINE Alu -13 289 1 1164 153 27 18 chr21 31227771 31227993 -3679577 - Tigger1 DNA MER2_type -2181 237 14 2485 76 0 0 chr21 31228012 31228315 -3679255 + AluY SINE Alu 1 303 -8 2081 120 7 3 chr21 31228642 31228943 -3678627 + AluSx SINE Alu 1 302 -10 234 193 12 24 chr21 31229163 31229246 -3678324 - Charlie4 DNA MER1_type -93 1868 1787 950 186 19 0 chr21 31230079 31230290 -3677280 - AluJb SINE Alu 0 332 119 2532 73 0 3 chr21 31230999 31231299 -3676271 + AluSp SINE Alu 1 299 -14 2012 138 0 24 chr21 31231364 31231661 -3675909 - AluSx SINE Alu -22 290 1 3425 176 22 0 chr21 31231673 31232297 -3675273 - L1MB3 LINE L1 -2 6181 5544 27 0 0 0 chr21 31232297 31232324 -3675246 + AT_rich Low_complexity Low_complexity 1 27 0 1254 171 19 35 chr21 31232346 31232603 -3674967 - L1MB3 LINE L1 -623 5560 5308 354 45 0 0 chr21 31232617 31232661 -3674909 + (TG)n Simple_repeat Simple_repeat 2 45 0 678 160 0 69 chr21 31232661 31232792 -3674778 - AluJb SINE Alu -190 122 1 2402 102 3 0 chr21 31232934 31233239 -3674331 - AluSp SINE Alu -7 306 1 2442 82 3 13 chr21 31233523 31233838 -3673732 - AluSx SINE Alu 0 312 1 2020 152 0 10 chr21 31233840 31234186 -3673384 - AluSx SINE Alu 0 312 1 2268 128 0 6 chr21 31234268 31234581 -3672989 + AluSx SINE Alu 1 311 -1 2120 136 0 0 chr21 31234772 31235067 -3672503 + AluSg SINE Alu 1 295 -15 2482 79 3 3 chr21 31235651 31235956 -3671614 + AluSp SINE Alu 1 305 -8 240 35 0 0 chr21 31235956 31235985 -3671585 + (TA)n Simple_repeat Simple_repeat 1 29 0 666 190 147 16 chr21 31236086 31236163 -3671407 + MER58C DNA MER1_type 1 67 -2353 2557 65 0 3 chr21 31236163 31236469 -3671101 - AluY SINE Alu -6 305 1 666 190 147 16 chr21 31236469 31236575 -3670995 + MER58C DNA MER1_type 67 208 -7 2333 102 10 0 chr21 31236597 31236900 -3670670 - AluSg SINE Alu -4 306 1 749 156 49 0 chr21 31237708 31237830 -3669740 - FLAM_C SINE Alu -5 128 1 2116 117 7 10 chr21 31237972 31238270 -3669300 - AluSx SINE Alu -15 297 1 1966 157 7 0 chr21 31238368 31238673 -3668897 + AluJb SINE Alu 1 307 -5 937 103 24 0 chr21 31238682 31238808 -3668762 + AluSg/x SINE Alu 150 278 -32 233 57 29 0 chr21 31238808 31238843 -3668727 + (TAAA)n Simple_repeat Simple_repeat 4 39 0 1079 240 58 57 chr21 31239130 31239667 -3667903 - MER39 LTR ERV1 -2 705 8 754 169 15 0 chr21 31239757 31239887 -3667683 + FLAM_C SINE Alu 2 133 0 2385 82 0 25 chr21 31239996 31240315 -3667255 + AluY SINE Alu 1 311 0 200 176 0 0 chr21 31240415 31240449 -3667121 + (CTTA)n Simple_repeat Simple_repeat 4 37 0 668 206 97 0 chr21 31241004 31241169 -3666401 - MLT1G LTR MaLR -42 548 368 490 251 49 39 chr21 31241529 31241732 -3665838 - MLT1G LTR MaLR -315 280 76 186 71 0 0 chr21 31242198 31242226 -3665344 + (T)n Simple_repeat Simple_repeat 1 28 0 2283 111 3 0 chr21 31242277 31242583 -3664987 - AluSx SINE Alu -5 307 1 2206 126 0 19 chr21 31242583 31242893 -3664677 - AluJb SINE Alu -8 304 1 950 156 0 0 chr21 31242893 31243028 -3664542 - AluSq/x SINE Alu -178 135 1 2386 116 0 0 chr21 31243463 31243773 -3663797 - AluSx SINE Alu -2 310 1 819 160 84 52 chr21 31243918 31243947 -3663623 - L1MC4a LINE L1 -570 7238 7211 1740 187 7 3 chr21 31243947 31244247 -3663323 + AluJb SINE Alu 1 301 -11 819 160 84 52 chr21 31244247 31244467 -3663103 - L1MC4a LINE L1 -597 7211 6981 532 125 36 60 chr21 31244469 31244516 -3663054 - MER31A LTR ERV1 -2 483 436 1513 171 35 4 chr21 31244516 31244774 -3662796 + AluJo SINE Alu 33 298 -14 532 125 36 60 chr21 31244774 31244949 -3662621 - MER31A LTR ERV1 -49 436 217 1040 136 0 26 chr21 31245264 31245419 -3662151 - AluJo SINE Alu -161 151 1 2044 142 20 0 chr21 31245430 31245732 -3661838 - AluSx SINE Alu -4 308 1 180 255 0 39 chr21 31246502 31246553 -3661017 - L2 LINE L2 -570 2744 2696 2227 118 53 31 chr21 31246588 31246944 -3660626 - THE1B LTR MaLR 0 364 1 12093 86 10 5 chr21 31246948 31248026 -3659544 - THE1B-int LTR MaLR -4 1576 484 2177 114 0 0 chr21 31248026 31248330 -3659240 - AluSg SINE Alu 0 304 1 12093 86 10 5 chr21 31248330 31248817 -3658753 - THE1B-int LTR MaLR -1096 484 1 2352 101 48 34 chr21 31248818 31249173 -3658397 - THE1B LTR MaLR -1 363 4 1630 194 18 0 chr21 31249173 31249457 -3658113 + AluJo SINE Alu 17 305 -7 199 250 0 0 chr21 31250163 31250207 -3657363 + L2 LINE L2 2170 2213 -1101 2289 78 0 3 chr21 31250230 31250551 -3657019 + AluY SINE Alu 1 320 0 759 174 40 40 chr21 31250557 31250706 -3656864 - AluJo SINE Alu -161 151 3 230 178 55 55 chr21 31250818 31250891 -3656679 + L2 LINE L2 2314 2386 -928 2325 99 7 0 chr21 31251261 31251564 -3656006 - AluSg SINE Alu -5 305 1 189 244 22 0 chr21 31252021 31252066 -3655504 + L2 LINE L2 2923 2968 -346 343 307 21 29 chr21 31252200 31252340 -3655230 + L2 LINE L2 3173 3311 -2 2415 71 3 0 chr21 31252507 31252801 -3654769 + AluSp SINE Alu 1 295 -18 2274 104 0 13 chr21 31254649 31254977 -3652593 - AluSx SINE Alu 0 312 1 236 254 0 0 chr21 31254977 31255036 -3652534 - L1ME LINE L1 -516 5605 5547 2238 107 0 0 chr21 31256333 31256613 -3650957 + AluSq SINE Alu 1 280 -33 324 0 0 0 chr21 31256613 31256649 -3650921 + (CA)n Simple_repeat Simple_repeat 1 36 0 839 312 21 3 chr21 31256717 31257047 -3650523 + L1MB8 LINE L1 3510 3845 -2301 2156 122 0 10 chr21 31257048 31257344 -3650226 + AluSx SINE Alu 2 294 -18 1934 241 44 21 chr21 31257353 31257587 -3649983 + L1MB8 LINE L1 5596 5823 -355 1999 123 13 19 chr21 31257587 31257717 -3649853 + AluSx SINE Alu 4 133 -179 2302 92 14 3 chr21 31257717 31258012 -3649558 + AluSp SINE Alu 1 298 -15 1999 123 13 19 chr21 31258012 31258190 -3649380 + AluSx SINE Alu 133 310 -2 1934 241 44 21 chr21 31258190 31258520 -3649050 + L1MB8 LINE L1 5823 6173 -5 23 54 0 0 chr21 31258962 31258999 -3648571 + AT_rich Low_complexity Low_complexity 1 37 0 400 224 35 0 chr21 31258999 31259084 -3648486 - FLAM_C SINE Alu -19 124 37 2113 91 3 51 chr21 31259121 31259450 -3648120 + AluSg SINE Alu 1 315 0 2585 57 0 7 chr21 31259618 31259919 -3647651 - AluY SINE Alu -11 300 2 330 158 2 0 chr21 31260757 31260821 -3646749 - MLT1F LTR MaLR -1 548 484 2371 97 0 22 chr21 31260829 31261140 -3646430 + AluSq SINE Alu 1 304 -9 1791 171 12 12 chr21 31262079 31262418 -3645152 - L1MB3 LINE L1 -7 6176 5838 1053 177 50 55 chr21 31262421 31262564 -3645006 - L1MB3 LINE L1 -764 5478 5336 2594 75 0 0 chr21 31262564 31262872 -3644698 - AluY SINE Alu -3 308 1 1053 177 50 55 chr21 31262872 31263174 -3644396 - L1MB3 LINE L1 -906 5336 5035 448 130 22 54 chr21 31263174 31263266 -3644304 - FLAM_C SINE Alu -19 124 36 242 237 0 0 chr21 31263266 31263325 -3644245 - L1MB3 LINE L1 -1113 5033 4975 1083 245 20 10 chr21 31263354 31263660 -3643910 - L1MB3 LINE L1 -1430 4716 4408 1860 235 53 12 chr21 31263670 31264571 -3642999 - L1MB3 LINE L1 -2020 4126 3045 856 142 0 8 chr21 31266479 31266613 -3640957 + FLAM_C SINE Alu 1 133 0 371 221 42 21 chr21 31266949 31267022 -3640548 - L1ME4a LINE L1 -32 6089 6012 453 19 0 0 chr21 31267022 31267076 -3640494 + (CA)n Simple_repeat Simple_repeat 1 54 0 371 221 42 21 chr21 31267076 31267097 -3640473 - L1ME4a LINE L1 -109 6012 5993 278 84 11 16 chr21 31267258 31267316 -3640254 - Alu SINE Alu -34 267 228 2301 87 24 0 chr21 31267363 31267652 -3639918 + AluSg SINE Alu 1 296 -14 2191 129 7 0 chr21 31267662 31267971 -3639599 + AluSq SINE Alu 1 311 -2 391 295 0 0 chr21 31267978 31268100 -3639470 - HAL1 LINE L1 -844 1663 1542 2216 119 3 0 chr21 31268100 31268393 -3639177 - AluSx SINE Alu -18 294 1 2073 151 3 3 chr21 31268477 31268782 -3638788 - AluJb SINE Alu -5 307 3 1421 152 0 5 chr21 31269461 31269672 -3637898 + AluJo SINE Alu 85 294 -18 2122 92 49 0 chr21 31272181 31272465 -3635105 - AluY SINE Alu -13 298 1 749 84 0 0 chr21 31272489 31272584 -3634986 - AluS SINE Alu -217 96 2 453 298 38 13 chr21 31272796 31272954 -3634616 + MIR SINE MIR 39 200 -62 838 164 0 22 chr21 31273603 31273737 -3633833 - FLAM_C SINE Alu -1 132 2 2309 104 0 0 chr21 31275028 31275325 -3632245 + AluSg SINE Alu 1 297 -13 2088 119 7 3 chr21 31276189 31276483 -3631087 + AluSc SINE Alu 1 295 -14 2457 79 0 13 chr21 31277967 31278282 -3629288 - AluY SINE Alu 0 311 1 417 39 0 0 chr21 31278812 31278863 -3628707 + (TG)n Simple_repeat Simple_repeat 1 51 0 2348 86 7 0 chr21 31280420 31280711 -3626859 - AluSp SINE Alu -20 293 1 931 169 12 6 chr21 31281023 31281189 -3626381 + FAM SINE Alu 1 167 -8 2374 91 0 0 chr21 31283101 31283397 -3624173 + AluSx SINE Alu 1 296 -16 22 35 0 0 chr21 31284016 31284045 -3623525 + AT_rich Low_complexity Low_complexity 1 29 0 2044 127 0 0 chr21 31284144 31284465 -3623105 + AluSx SINE Alu 1 321 0 2279 116 0 3 chr21 31284506 31284816 -3622754 + AluSg SINE Alu 1 309 -1 919 227 122 17 chr21 31285775 31285999 -3621571 - Tigger3(Golem) DNA MER2_type 0 3028 2764 1588 206 3 3 chr21 31285999 31286290 -3621280 + AluJb SINE Alu 1 291 -21 919 227 122 17 chr21 31286290 31286360 -3621210 - Tigger3(Golem) DNA MER2_type -264 2764 2703 407 287 117 0 chr21 31286763 31286993 -3620577 - L1MCc LINE L1 -5083 1340 1084 322 263 246 0 chr21 31287483 31287601 -3619969 - HAL1 LINE L1 -928 1579 1433 439 229 33 16 chr21 31287860 31287982 -3619588 + MLT1G1 LTR MaLR 439 562 -33 2142 97 7 7 chr21 31288530 31288818 -3618752 - AluSx SINE Alu -15 297 10 1811 163 3 0 chr21 31289319 31289607 -3617963 + AluJb SINE Alu 1 289 -23 6199 179 37 45 chr21 31290861 31292181 -3615389 + MER52A LTR ERV1 446 1755 0 1894 99 25 62 chr21 31292451 31292773 -3614797 + AluSg SINE Alu 1 310 0 189 0 0 0 chr21 31294770 31294791 -3612779 + (GCTG)n Simple_repeat Simple_repeat 4 24 0 262 222 62 0 chr21 31294900 31294981 -3612589 + MER91C DNA MER1_type 1 86 -54 1046 217 80 13 chr21 31295330 31295358 -3612212 - L1MB3 LINE L1 -8 6175 6150 2385 51 0 3 chr21 31295358 31295653 -3611917 - AluY SINE Alu -17 294 1 1046 217 80 13 chr21 31295653 31296012 -3611558 - L1MB3 LINE L1 -33 6150 5742 426 264 124 8 chr21 31296029 31296150 -3611420 - MIR SINE MIR -113 149 15 180 246 16 66 chr21 31296101 31296162 -3611408 - L2 LINE L2 -2090 1224 1167 798 69 10 0 chr21 31296199 31296300 -3611270 - AluS SINE Alu -211 102 1 1165 210 88 6 chr21 31296345 31296664 -3610906 + MLT1C LTR MaLR 1 345 -122 1526 144 110 0 chr21 31296688 31296952 -3610618 + AluJb SINE Alu 2 294 -18 894 192 28 14 chr21 31296952 31297166 -3610404 + LTR24 LTR ERV1 249 465 -2 518 213 57 0 chr21 31297166 31297286 -3610284 + MLT1C LTR MaLR 340 466 -1 510 260 55 0 chr21 31297330 31297476 -3610094 - MLT1D LTR MaLR -349 156 3 1875 180 3 0 chr21 31297624 31297935 -3609635 - AluJb SINE Alu 0 312 1 415 305 49 18 chr21 31297937 31298163 -3609407 - HAL1 LINE L1 -196 2311 2079 1391 133 109 89 chr21 31298177 31298470 -3609100 - AluJb SINE Alu -13 299 1 1227 167 120 0 chr21 31298592 31298825 -3608745 - AluJo SINE Alu -10 302 42 491 255 79 31 chr21 31299046 31299336 -3608234 - HAL1 LINE L1 -973 1534 1231 669 250 46 15 chr21 31299393 31299658 -3607912 + L1MB5 LINE L1 4657 4938 -1208 461 246 63 23 chr21 31299707 31299882 -3607688 + L1MB5 LINE L1 5019 5200 -946 1232 174 0 9 chr21 31299882 31300095 -3607475 + AluSx SINE Alu 1 211 -101 479 62 0 16 chr21 31300096 31300160 -3607410 + AluSq/x SINE Alu 78 140 -173 2095 115 0 32 chr21 31300161 31300298 -3607272 + AluSx SINE Alu 6 146 -166 2192 115 0 0 chr21 31300298 31300602 -3606968 + AluSg SINE Alu 6 309 -1 2095 115 0 32 chr21 31300602 31300776 -3606794 + AluSx SINE Alu 146 307 -5 3113 192 80 31 chr21 31300777 31301153 -3606417 + L1MB5 LINE L1 5207 5563 -611 2312 90 7 0 chr21 31301153 31301453 -3606117 + AluSx SINE Alu 2 303 -9 3113 192 80 31 chr21 31301453 31302001 -3605569 + L1MB5 LINE L1 5563 6173 -1 2083 131 3 0 chr21 31302677 31302975 -3604595 - AluSx SINE Alu -13 299 1 1773 162 7 20 chr21 31303170 31303472 -3604098 + AluJo SINE Alu 1 298 -14 371 254 138 0 chr21 31303611 31303792 -3603778 + MLT2B1 LTR ERVL 1 206 -314 392 250 75 8 chr21 31303797 31303917 -3603653 + MLT2D LTR ERVL 238 365 -49 2167 97 3 41 chr21 31309792 31310111 -3597459 - AluSp SINE Alu -6 307 1 248 296 57 0 chr21 31315801 31315889 -3591681 + MIR SINE MIR 79 171 -91 870 216 46 3 chr21 31316405 31316675 -3590895 + MER92B LTR ERV1 1 354 -200 231 36 0 0 chr21 31317265 31317293 -3590277 + (A)n Simple_repeat Simple_repeat 1 28 0 406 274 32 70 chr21 31317306 31317591 -3589979 + L1MD2 LINE L1 6086 6359 0 2033 94 18 0 chr21 31319224 31319501 -3588069 + AluSx SINE Alu 26 307 -5 1586 155 99 3 chr21 31319910 31320194 -3587376 + AluJb SINE Alu 1 311 -1 298 243 14 14 chr21 31320280 31320354 -3587216 - L2 LINE L2 0 3313 3240 743 151 50 22 chr21 31320971 31321110 -3586460 + FLAM_C SINE Alu 1 143 0 1636 183 98 52 chr21 31321110 31321592 -3585978 + L1MB3 LINE L1 5678 6181 -2 234 159 135 127 chr21 31321858 31322011 -3585559 + L1MC2 LINE L1 6188 6338 -1417 2503 49 7 0 chr21 31322011 31322317 -3585253 + AluSc SINE Alu 1 308 -1 234 159 135 127 chr21 31322317 31322424 -3585146 + L1MC2 LINE L1 6338 6443 -1312 2166 72 24 10 chr21 31322424 31322716 -3584854 - AluSq SINE Alu -17 296 1 234 159 135 127 chr21 31322716 31322739 -3584831 + L1MC2 LINE L1 6443 7755 0 326 263 13 32 chr21 31324496 31324652 -3582918 + (CCCCG)n Simple_repeat Simple_repeat 2 154 0 28 29 0 0 chr21 31324917 31324952 -3582618 + GC_rich Low_complexity Low_complexity 1 35 0 571 112 20 20 chr21 31325564 31325662 -3581908 + AluSg/x SINE Alu 212 309 0 377 258 60 6 chr21 31325677 31325844 -3581726 + MLT1C LTR MaLR 163 338 -129 2083 110 13 3 chr21 31325877 31326177 -3581393 - AluSx SINE Alu -9 303 1 299 100 0 20 chr21 31326178 31326228 -3581342 + MLT1E1 LTR MaLR 589 637 -17 315 0 0 0 chr21 31326417 31326452 -3581118 + (CA)n Simple_repeat Simple_repeat 1 35 0 574 163 0 0 chr21 31326502 31326600 -3580970 - AluSg/x SINE Alu 0 309 212 1909 94 0 19 chr21 31326602 31326867 -3580703 - AluSq SINE Alu -53 260 1 352 262 79 59 chr21 31326868 31326933 -3580637 - L1MC4a LINE L1 -650 7158 7096 2268 92 0 0 chr21 31326933 31327252 -3580318 + AluSc SINE Alu 9 327 0 352 262 79 59 chr21 31327252 31327386 -3580184 - L1MC4a LINE L1 -712 7096 6953 942 116 0 48 chr21 31327426 31327572 -3579998 + AluSq/x SINE Alu 1 139 -174 1777 112 21 103 chr21 31327573 31327913 -3579657 + AluYb8 SINE Alu 7 318 0 233 391 68 6 chr21 31328028 31328189 -3579381 - L2 LINE L2 -1803 1511 1341 459 152 0 0 chr21 31328360 31328439 -3579131 + GA-rich Low_complexity Low_complexity 1 79 0 288 311 37 0 chr21 31328922 31329057 -3578513 - L2 LINE L2 -2286 1028 889 2237 112 3 3 chr21 31329513 31329825 -3577745 - AluSx SINE Alu 0 312 1 1050 164 0 0 chr21 31329825 31329992 -3577578 - AluJb SINE Alu -8 304 135 300 294 50 25 chr21 31330053 31330172 -3577398 - MIR SINE MIR -31 231 110 410 135 27 27 chr21 31330267 31330341 -3577229 + MER116 DNA Mariner 3 76 -4 1725 70 0 0 chr21 31330341 31330556 -3577014 - AluSg/x SINE Alu -13 297 83 2323 74 0 7 chr21 31330556 31330853 -3576717 - AluY SINE Alu -16 295 1 2059 103 34 0 chr21 31330861 31331152 -3576418 - AluSx SINE Alu -7 305 5 295 195 53 115 chr21 31332442 31332522 -3575048 + L2 LINE L2 2435 2508 -806 1711 166 21 7 chr21 31332522 31332812 -3574758 - AluJb SINE Alu -18 294 1 295 195 53 115 chr21 31332812 31332844 -3574726 + L2 LINE L2 2508 2540 -774 231 208 0 0 chr21 31332963 31333011 -3574559 + L1ME LINE L1 4898 4945 -1201 1739 171 7 3 chr21 31333049 31333348 -3574222 + AluJo SINE Alu 12 311 -1 1739 147 0 55 chr21 31333394 31333701 -3573869 + AluJb SINE Alu 1 290 -22 915 120 0 4 chr21 31333708 31333917 -3573653 + AluSx SINE Alu 1 293 -17 219 69 0 0 chr21 31333917 31333946 -3573624 + (CA)n Simple_repeat Simple_repeat 2 30 0 2159 113 0 0 chr21 31333949 31334262 -3573308 + AluSq SINE Alu 1 313 0 2024 130 23 0 chr21 31334270 31334570 -3573000 + AluSx SINE Alu 1 307 -5 506 251 54 37 chr21 31334591 31334870 -3572700 + L1ME LINE L1 5028 5321 -841 2319 91 0 7 chr21 31334870 31335178 -3572392 - AluSq SINE Alu -7 306 1 506 251 54 37 chr21 31335178 31335330 -3572240 + L1ME LINE L1 5321 5469 -693 417 319 80 35 chr21 31335349 31335553 -3572017 + L2 LINE L2 2559 2781 -533 815 180 0 0 chr21 31335553 31335681 -3571889 + FLAM_C SINE Alu 2 129 -4 417 319 80 35 chr21 31335681 31335764 -3571806 + L2 LINE L2 2781 2859 -455 209 219 0 0 chr21 31335919 31335960 -3571610 + CT-rich Low_complexity Low_complexity 2 42 0 1747 151 56 0 chr21 31336705 31336989 -3570581 + AluSx SINE Alu 1 300 -12 2244 83 0 17 chr21 31337395 31337696 -3569874 - AluSc SINE Alu -13 296 1 1956 113 7 3 chr21 31339008 31339300 -3568270 + AluSx SINE Alu 1 293 -19 1457 152 19 19 chr21 31339834 31340091 -3567479 - AluJb SINE Alu -20 292 36 534 103 0 26 chr21 31340510 31340588 -3566982 - AluJ/FRAM SINE Alu -21 291 216 257 163 0 0 chr21 31341708 31341751 -3565819 + (CCA)n Simple_repeat Simple_repeat 3 45 0 732 92 155 49 chr21 31342519 31342661 -3564909 - MER30 DNA MER1_type -55 175 19 1857 97 3 62 chr21 31344611 31344919 -3562651 - AluSx SINE Alu -20 292 3 2331 77 0 0 chr21 31345225 31345525 -3562045 - AluSg1 SINE Alu -8 301 2 2070 102 14 7 chr21 31345675 31345969 -3561601 - AluSx SINE Alu -16 296 1 443 85 9 4 chr21 31346163 31346376 -3561194 - AluSc SINE Alu -2 307 1 2324 71 3 0 chr21 31348476 31348773 -3558797 - AluSg SINE Alu -12 298 1 277 209 174 0 chr21 31353355 31353441 -3554129 + MIR SINE MIR 50 150 -112 256 50 25 50 chr21 31355271 31355311 -3552259 + Tigger5 DNA MER2_type 2253 2291 -32 380 135 216 0 chr21 31355308 31355382 -3552188 + Tigger5 DNA MER2_type 2234 2323 0 29 47 0 0 chr21 31355875 31355918 -3551652 + GC_rich Low_complexity Low_complexity 1 43 0 213 196 0 0 chr21 31356053 31356109 -3551461 + (CCG)n Simple_repeat Simple_repeat 2 57 0 1918 164 68 14 chr21 31356514 31356928 -3550642 - LTR23 LTR ERV1 -1 436 1 2570 111 88 14 chr21 31357461 31357892 -3549678 - MER4C LTR ERV1 -2 463 1 1821 176 39 25 chr21 31358194 31358625 -3548945 + LTR23 LTR ERV1 1 437 0 692 209 69 67 chr21 31358625 31359065 -3548505 + LTR23-int LTR ERV1 1 629 -4494 2198 100 0 3 chr21 31359065 31359374 -3548196 - AluSg1 SINE Alu -1 308 1 692 209 69 67 chr21 31359374 31359463 -3548107 + LTR23-int LTR ERV1 629 716 -4407 819 143 109 0 chr21 31359755 31359902 -3547668 - AluSg/x SINE Alu -9 301 139 2262 89 3 3 chr21 31359908 31360210 -3547360 - AluSq SINE Alu -11 302 1 2234 97 0 3 chr21 31360246 31360556 -3547014 + AluSg1 SINE Alu 1 309 0 1997 117 0 16 chr21 31360744 31361061 -3546509 + AluSq SINE Alu 1 312 -1 1840 115 54 0 chr21 31361103 31361381 -3546189 + AluSx SINE Alu 13 305 -7 509 205 14 31 chr21 31361595 31361608 -3545962 + LTR23-int LTR ERV1 1370 1382 -4564 2257 83 0 3 chr21 31361608 31361909 -3545661 - AluSx SINE Alu -12 300 1 2138 112 0 0 chr21 31361909 31362203 -3545367 - AluSq SINE Alu -5 308 15 509 205 14 31 chr21 31362203 31362333 -3545237 + LTR23-int LTR ERV1 1380 1864 -4082 1150 118 0 0 chr21 31362338 31362499 -3545071 - AluSg/x SINE Alu -21 289 129 2134 109 3 0 chr21 31362551 31362845 -3544725 - AluSq SINE Alu -18 295 1 515 174 0 0 chr21 31362970 31363056 -3544514 + LTR23-int LTR ERV1 841 926 -4197 1133 186 22 13 chr21 31363057 31363288 -3544282 + MLT2A2 LTR ERVL 1 233 -220 1625 180 55 55 chr21 31363289 31363672 -3543898 - LTR8 LTR ERV1 0 691 309 1319 160 11 53 chr21 31364400 31364663 -3542907 - LTR8 LTR ERV1 -439 252 1 1268 232 25 42 chr21 31364663 31365006 -3542564 + MLT2B3 LTR ERVL 218 554 0 1234 185 56 117 chr21 31365027 31365256 -3542314 + LTR23-int LTR ERV1 948 1143 -3980 8017 62 15 1 chr21 31365256 31366249 -3541321 - LTR13 LTR ERVK 0 1007 1 1234 185 56 117 chr21 31366249 31366429 -3541141 + LTR23-int LTR ERV1 1143 1332 -3791 476 183 0 11 chr21 31366429 31366522 -3541048 + LTR23-int LTR ERV1 4295 4386 -737 627 116 29 5 chr21 31366529 31366657 -3540913 + LTR23-int LTR ERV1 1990 2745 -4013 2177 85 0 10 chr21 31366657 31366950 -3540620 + AluY SINE Alu 1 290 -21 599 128 11 0 chr21 31366950 31367044 -3540526 + LTR23-int LTR ERV1 4087 4181 -3939 288 148 0 161 chr21 31367085 31367166 -3540404 + FLAM SINE Alu 65 117 -16 978 162 17 35 chr21 31367166 31367316 -3540254 + LTR23-int LTR ERV1 2562 2713 -2410 2086 134 0 0 chr21 31367316 31367615 -3539955 + AluSx SINE Alu 1 299 -13 978 162 17 35 chr21 31367615 31367752 -3539818 + LTR23-int LTR ERV1 2713 2879 -2244 15393 34 3 16 chr21 31367754 31370391 -3537179 - L1PA5 LINE L1 -1 6153 3536 1247 93 0 0 chr21 31370392 31370554 -3537016 - AluSq SINE Alu -151 162 1 2424 112 22 116 chr21 31370554 31370978 -3536592 - LTR49-int LTR ERV1 -1786 4545 4083 1518 195 17 10 chr21 31370978 31371275 -3536295 + AluJb SINE Alu 1 299 -13 2424 112 22 116 chr21 31371275 31371332 -3536238 - LTR49-int LTR ERV1 -2248 4083 4117 2066 142 0 0 chr21 31371332 31371641 -3535929 + AluSx SINE Alu 1 309 -3 2424 112 22 116 chr21 31371641 31371703 -3535867 - LTR49-int LTR ERV1 -2213 4118 4052 4122 63 0 0 chr21 31371703 31372210 -3535360 + L1P LINE L1 629 1135 -5011 4073 56 0 0 chr21 31372206 31372741 -3534829 + L1P LINE L1 3007 3541 -2605 1054 118 0 0 chr21 31372741 31372894 -3534676 + AluSg/x SINE Alu 156 308 -2 6328 157 45 27 chr21 31372902 31373197 -3534373 + LTR23-int LTR ERV1 4427 4715 -408 2104 78 60 0 chr21 31373197 31373481 -3534089 - AluSq SINE Alu -12 301 1 6328 157 45 27 chr21 31373481 31374457 -3533113 + LTR23-int LTR ERV1 4715 5672 549 2307 86 0 3 chr21 31374457 31374758 -3532812 - AluSq SINE Alu -13 300 1 6328 157 45 27 chr21 31374758 31374950 -3532620 + LTR23-int LTR ERV1 5672 5859 736 2517 127 13 77 chr21 31374950 31375359 -3532211 + MSTA LTR MaLR 1 434 6 294 29 0 0 chr21 31375359 31375394 -3532176 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1550 182 0 14 chr21 31375401 31375686 -3531884 - AluJb SINE Alu -31 281 1 2517 127 13 77 chr21 31375686 31375725 -3531845 + MSTA LTR MaLR 388 428 0 6328 157 45 27 chr21 31375725 31375866 -3531704 + LTR23-int LTR ERV1 5858 5118 -5 517 99 0 44 chr21 31375866 31375957 -3531613 + LTR23 LTR ERV1 2 88 -349 1177 177 0 14 chr21 31375977 31376192 -3531378 + AluJb SINE Alu 93 304 -8 610 121 3 7 chr21 31376195 31376324 -3531246 + LTR24 LTR ERV1 336 465 -2 201 367 0 0 chr21 31376326 31376405 -3531165 + (TTCA)n Simple_repeat Simple_repeat 3 81 0 791 166 0 6 chr21 31376415 31376578 -3530992 + (TCCA)n Simple_repeat Simple_repeat 3 164 0 196 304 13 25 chr21 31376649 31376728 -3530842 + L2 LINE L2 2304 2381 -933 806 172 0 0 chr21 31377863 31377997 -3529573 + FLAM_C SINE Alu 1 134 -9 242 365 0 0 chr21 31378083 31378220 -3529350 + Tigger4(Zombi) DNA MER2_type 678 814 -1917 1834 147 3 3 chr21 31378337 31378637 -3528933 + AluJb SINE Alu 3 302 -10 524 297 11 0 chr21 31378841 31379026 -3528544 + Tigger4(Zombi) DNA MER2_type 1213 1399 -1332 1865 118 3 66 chr21 31379204 31379577 -3527993 - MER4A LTR ERV1 0 664 257 548 146 21 10 chr21 31379574 31379670 -3527900 - MER4A LTR ERV1 -567 97 1 2489 105 45 38 chr21 31380243 31380502 -3527068 - LTR24B LTR ERV1 -7 569 304 2264 109 0 0 chr21 31380502 31380814 -3526756 + AluSx SINE Alu 1 312 0 2489 105 45 38 chr21 31380814 31380954 -3526616 - LTR24B LTR ERV1 -272 304 167 451 171 0 114 chr21 31380954 31380995 -3526575 + AluJo/FLAM SINE Alu 37 81 -231 2111 106 3 0 chr21 31380995 31381288 -3526282 - AluSx SINE Alu -18 294 1 451 171 0 114 chr21 31381288 31381351 -3526219 + AluJo/FLAM SINE Alu 81 129 -183 1129 106 0 6 chr21 31381407 31381567 -3526003 - LTR24B LTR ERV1 -415 161 3 351 266 83 9 chr21 31381752 31381861 -3525709 + MER46C DNA MER2_type 135 251 -87 2795 13 0 0 chr21 31381899 31382215 -3525355 - AluYb8 SINE Alu -2 316 1 684 204 0 36 chr21 31382294 31382351 -3525219 + FLAM_A SINE Alu 1 59 -252 4753 105 8 1 chr21 31382351 31383007 -3524563 + PABL_A LTR ERV1 1 660 0 684 204 0 36 chr21 31383007 31383086 -3524484 + FLAM_A SINE Alu 59 132 -179 493 266 35 12 chr21 31383103 31383272 -3524298 + MLT1H LTR MaLR 55 227 -322 2129 128 0 0 chr21 31383898 31384196 -3523374 + AluSx SINE Alu 1 298 -14 380 333 40 0 chr21 31384441 31384567 -3523003 - L2 LINE L2 -1 3271 3141 351 296 35 17 chr21 31384931 31385046 -3522524 + MIR3 SINE MIR 89 205 -3 2325 103 3 0 chr21 31385182 31385492 -3522078 - AluSx SINE Alu -1 311 1 1120 206 76 32 chr21 31385684 31386000 -3521570 - MLT1A2 LTR MaLR -16 358 29 1387 148 41 24 chr21 31386507 31386798 -3520772 - L1MB3 LINE L1 -1 6182 5887 1503 116 9 35 chr21 31386798 31387030 -3520540 - AluSg/x SINE Alu -12 298 73 229 32 0 0 chr21 31387030 31387061 -3520509 - AluY SINE Alu -102 31 1 1128 187 5 0 chr21 31387061 31387275 -3520295 - L1MB3 LINE L1 -289 5894 5680 552 300 86 9 chr21 31387275 31387495 -3520075 - L1MC/D LINE L1 -1984 5824 5588 3229 167 48 49 chr21 31388000 31388123 -3519447 - MER6 DNA MER2_type 0 865 743 2126 94 35 0 chr21 31388123 31388410 -3519160 + AluSp SINE Alu 1 297 -16 3229 167 48 49 chr21 31388410 31388442 -3519128 - MER6 DNA MER2_type -122 743 712 1740 175 3 23 chr21 31388442 31388751 -3518819 + AluJb SINE Alu 4 306 -6 3229 167 48 49 chr21 31388751 31389350 -3518220 - MER6 DNA MER2_type -153 712 111 242 161 48 16 chr21 31389459 31389521 -3518049 - MLT1J LTR MaLR -322 189 126 280 237 0 26 chr21 31390209 31390285 -3517285 + C-rich Low_complexity Low_complexity 1 74 0 305 284 82 0 chr21 31390690 31390824 -3516746 - MIR3 SINE MIR -24 184 40 221 0 35 0 chr21 31390887 31390916 -3516654 + (CAGGG)n Simple_repeat Simple_repeat 4 33 0 2066 130 69 33 chr21 31390924 31391247 -3516323 + THE1C LTR MaLR 1 340 -35 2303 84 0 0 chr21 31391247 31391546 -3516024 - AluSx SINE Alu -13 299 1 2066 130 69 33 chr21 31391546 31391584 -3515986 + THE1C LTR MaLR 340 375 0 1444 242 52 7 chr21 31391588 31392030 -3515540 - MLT1C LTR MaLR 0 467 6 240 167 0 0 chr21 31392448 31392494 -3515076 - MIR SINE MIR -62 146 105 835 243 0 32 chr21 31393181 31393230 -3514340 - AluJb SINE Alu -8 304 255 1815 119 119 34 chr21 31393230 31393265 -3514305 + THE1A LTR MaLR 1 32 -323 2268 98 0 10 chr21 31393265 31393572 -3513998 - AluSq SINE Alu -9 304 1 1815 119 119 34 chr21 31393572 31393863 -3513707 + THE1A LTR MaLR 32 355 0 835 243 0 32 chr21 31393863 31394002 -3513568 - AluJb SINE Alu -57 255 122 2315 87 0 3 chr21 31394637 31394936 -3512634 - AluSx SINE Alu -14 298 1 1507 209 48 3 chr21 31395195 31395587 -3511983 + L1MB3 LINE L1 5774 6183 0 8060 51 9 0 chr21 31395681 31396641 -3510929 - LTR5 LTR ERVK 0 969 1 1904 133 36 7 chr21 31397127 31397428 -3510142 + AluJo SINE Alu 1 310 -2 1303 236 72 30 chr21 31397534 31397967 -3509603 - MLT1D LTR MaLR -54 451 1 1898 155 0 14 chr21 31398279 31398415 -3509155 + AluSx SINE Alu 1 137 -175 2076 120 0 0 chr21 31398415 31398718 -3508852 + AluSx SINE Alu 1 303 0 1898 155 0 14 chr21 31398718 31398877 -3508693 + AluSx SINE Alu 137 293 -19 707 126 10 0 chr21 31398877 31398980 -3508590 - L1MB3 LINE L1 -11 6172 6069 1303 236 43 25 chr21 31398981 31399349 -3508221 + MLT2C1 LTR ERVL 2 376 -21 346 219 149 26 chr21 31399364 31399478 -3508092 + L2 LINE L2 3166 3293 -20 372 43 0 0 chr21 31399844 31399890 -3507680 + (TCCA)n Simple_repeat Simple_repeat 1 46 0 531 267 12 41 chr21 31399921 31400093 -3507477 - L2 LINE L2 -58 3255 3089 245 251 24 24 chr21 31400323 31400447 -3507123 - MLT1I LTR MaLR -222 187 95 1534 199 105 43 chr21 31400484 31400856 -3506714 + MSTD LTR MaLR 2 396 0 943 312 71 22 chr21 31400862 31401354 -3506216 - L2 LINE L2 -288 3025 2485 1414 186 40 25 chr21 31401354 31401681 -3505889 - MLT1B LTR MaLR 0 390 59 718 172 0 16 chr21 31401683 31401811 -3505759 + FLAM_A SINE Alu 4 129 -13 2238 103 0 3 chr21 31401822 31402133 -3505437 - AluSx SINE Alu -2 310 1 850 152 0 14 chr21 31403257 31403402 -3504168 + FLAM_C SINE Alu 1 143 0 1691 205 31 12 chr21 31403584 31404000 -3503570 + MLT2C2 LTR ERVL 1 359 -38 329 331 82 62 chr21 31405488 31405641 -3501929 + L1 LINE L1 2964 3113 -3033 1640 108 0 0 chr21 31405641 31405864 -3501706 + AluSg/x SINE Alu 76 298 -12 329 331 82 62 chr21 31405864 31406015 -3501555 + L1 LINE L1 3113 3274 -2872 494 320 68 58 chr21 31406112 31406297 -3501273 + L1 LINE L1 3446 3637 -2509 1774 177 0 3 chr21 31406297 31406602 -3500968 - AluJb SINE Alu -8 304 1 494 320 68 58 chr21 31406602 31406741 -3500829 + L1 LINE L1 3637 3773 -2373 397 347 51 26 chr21 31407195 31407624 -3499946 + L1MC5 LINE L1 7490 7929 -32 279 127 75 15 chr21 31408362 31408496 -3499074 + (CA)n Simple_repeat Simple_repeat 2 143 0 514 72 44 50 chr21 31408537 31408717 -3498853 + (CA)n Simple_repeat Simple_repeat 2 180 0 463 77 65 35 chr21 31408779 31408949 -3498621 + (CA)n Simple_repeat Simple_repeat 1 175 0 357 96 70 26 chr21 31408970 31409126 -3498444 + (CA)n Simple_repeat Simple_repeat 1 163 0 285 132 66 22 chr21 31409139 31409230 -3498340 + (CA)n Simple_repeat Simple_repeat 1 95 0 1190 234 110 17 chr21 31410867 31411285 -3496285 - MER97a DNA MER1_type? 0 894 438 1462 161 49 74 chr21 31411523 31411716 -3495854 - MLT1B LTR MaLR -33 357 176 2166 104 7 3 chr21 31411716 31412023 -3495547 - AluSg SINE Alu -2 308 1 1462 161 49 74 chr21 31412023 31412195 -3495375 - MLT1B LTR MaLR -214 176 1 929 86 0 43 chr21 31412219 31412358 -3495212 + FLAM_C SINE Alu 1 133 -10 1075 236 26 0 chr21 31412358 31412625 -3494945 - MER82 DNA MER2_type -54 599 326 556 236 35 0 chr21 31412638 31412812 -3494758 + L1M4 LINE L1 2146 2325 -3821 1047 222 13 69 chr21 31412902 31413027 -3494543 - MER82 DNA MER2_type -342 311 181 2274 112 0 0 chr21 31413027 31413332 -3494238 - AluSx SINE Alu -7 305 1 1047 222 13 69 chr21 31413332 31413512 -3494058 - MER82 DNA MER2_type -472 181 23 302 224 0 15 chr21 31413856 31413923 -3493647 + L2 LINE L2 3162 3227 -86 1115 178 46 0 chr21 31414129 31414370 -3493200 + MLT1D LTR MaLR 254 505 0 2223 109 0 7 chr21 31414895 31415226 -3492344 + AluSx SINE Alu 1 312 0 398 328 30 0 chr21 31415505 31415636 -3491934 + MIR SINE MIR 49 183 -79 1887 137 10 29 chr21 31416256 31416386 -3491184 + AluSx SINE Alu 1 132 -180 270 0 0 0 chr21 31416386 31416416 -3491154 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1887 137 10 29 chr21 31416416 31416591 -3490979 + AluSx SINE Alu 132 300 -12 274 270 55 31 chr21 31418667 31418830 -3488740 + (CCAA)n Simple_repeat Simple_repeat 4 170 0 235 377 109 0 chr21 31419622 31419760 -3487810 - MIR SINE MIR -43 219 67 326 49 85 0 chr21 31422261 31422343 -3485227 + (CA)n Simple_repeat Simple_repeat 1 89 0 1203 233 63 0 chr21 31422786 31423121 -3484449 + MLT1B LTR MaLR 1 356 -34 185 294 141 0 chr21 31423761 31423846 -3483724 - MIR3 SINE MIR -52 156 60 263 342 64 18 chr21 31424480 31424645 -3482925 + MER5A DNA MER1_type 1 182 -7 200 240 0 40 chr21 31424872 31424922 -3482648 - L2 LINE L2 -15 3257 3210 519 272 38 9 chr21 31426351 31426651 -3480919 + (CA)n Simple_repeat Simple_repeat 1 308 0 563 178 237 0 chr21 31427641 31427793 -3479777 - MLT1C LTR MaLR -6 499 312 692 189 63 42 chr21 31427849 31428040 -3479530 - MLT1C LTR MaLR -272 195 1 441 298 0 17 chr21 31428179 31428360 -3479210 + (TG)n Simple_repeat Simple_repeat 2 179 0 323 244 6 0 chr21 31428403 31428571 -3478999 + (TG)n Simple_repeat Simple_repeat 2 170 0 287 220 8 0 chr21 31428662 31428794 -3478776 + (TG)n Simple_repeat Simple_repeat 2 134 0 301 226 11 0 chr21 31428837 31429014 -3478556 + (TG)n Simple_repeat Simple_repeat 2 180 0 470 202 6 0 chr21 31429029 31429197 -3478373 + (TG)n Simple_repeat Simple_repeat 2 170 0 239 181 14 0 chr21 31429210 31429282 -3478288 + (TG)n Simple_repeat Simple_repeat 2 74 0 2194 136 0 3 chr21 31432079 31432389 -3475181 - AluSx SINE Alu -3 309 1 400 191 63 39 chr21 31432731 31432866 -3474704 + L1ME LINE L1 179 305 -5900 493 245 77 0 chr21 31433281 31433424 -3474146 + L1ME LINE L1 1540 1693 -4703 1067 174 49 0 chr21 31433720 31433904 -3473666 - AluSg/x SINE Alu -2 308 116 218 233 14 41 chr21 31436219 31436292 -3471278 + (CATA)n Simple_repeat Simple_repeat 1 71 0 261 226 10 20 chr21 31436294 31436396 -3471174 + (CA)n Simple_repeat Simple_repeat 2 102 0 180 222 11 33 chr21 31436412 31436502 -3471068 + (CATA)n Simple_repeat Simple_repeat 4 91 0 2170 103 0 4 chr21 31436979 31437260 -3470310 - AluSx SINE Alu -17 295 16 340 267 127 40 chr21 31437879 31437960 -3469610 - L1ME3A LINE L1 -1 6169 6096 2154 125 10 14 chr21 31437960 31438256 -3469314 + AluJb SINE Alu 2 296 -16 340 267 127 40 chr21 31438256 31438324 -3469246 - L1ME3A LINE L1 -74 6096 6007 213 94 0 0 chr21 31438336 31438368 -3469202 + (TTCA)n Simple_repeat Simple_repeat 4 35 0 429 244 0 11 chr21 31438369 31438459 -3469111 - L2 LINE L2 -11 3302 3214 453 344 59 18 chr21 31438572 31438845 -3468725 - L1ME3A LINE L1 -208 5962 5679 461 200 127 53 chr21 31438966 31439010 -3468560 - L1ME3A LINE L1 -734 5428 5389 717 204 0 0 chr21 31439010 31439142 -3468428 - FLAM_C SINE Alu -1 132 1 461 200 127 53 chr21 31439142 31439247 -3468323 - L1ME3A LINE L1 -773 5389 5268 592 103 0 48 chr21 31441659 31441824 -3465746 + (CA)n Simple_repeat Simple_repeat 1 157 0 741 100 8 48 chr21 31441835 31442090 -3465480 + (CA)n Simple_repeat Simple_repeat 1 244 0 2055 159 0 0 chr21 31444866 31445175 -3462395 - AluSx SINE Alu -3 309 1 1496 305 48 24 chr21 31446045 31446292 -3461278 + L1MEc LINE L1 347 587 -5628 2327 94 0 3 chr21 31446292 31446591 -3460979 + AluSp SINE Alu 14 311 -2 1496 305 48 24 chr21 31446591 31447608 -3459962 + L1MEc LINE L1 587 1602 -4613 2166 236 58 10 chr21 31447693 31448460 -3459110 + L1MEc LINE L1 2120 2882 -3333 398 308 30 43 chr21 31448634 31448933 -3458637 - L1MC5 LINE L1 -39 7922 7628 1410 160 131 63 chr21 31448938 31449080 -3458490 - MER31B LTR ERV1 -59 407 276 1929 137 33 51 chr21 31449080 31449365 -3458205 - MLT1B LTR MaLR -2 388 110 1533 174 75 17 chr21 31449365 31449659 -3457911 - AluJo SINE Alu -1 311 1 1929 137 33 51 chr21 31449659 31449768 -3457802 - MLT1B LTR MaLR -280 110 1 1410 160 131 63 chr21 31449768 31450006 -3457564 - MER31B LTR ERV1 -190 276 1 348 198 28 66 chr21 31450020 31450126 -3457444 - HAL1 LINE L1 -2152 355 254 226 318 49 31 chr21 31450172 31450395 -3457175 - HAL1 LINE L1 -854 1653 1427 285 260 104 92 chr21 31450422 31450795 -3456775 - L1MEd LINE L1 -4862 1257 873 1792 162 0 58 chr21 31450795 31450986 -3456584 - AluJo SINE Alu -3 309 143 2541 72 0 0 chr21 31450986 31451292 -3456278 - AluY SINE Alu -5 306 1 1792 162 0 58 chr21 31451292 31451428 -3456142 - AluJo SINE Alu -169 143 1 285 260 104 92 chr21 31451428 31451619 -3455951 - L1MEd LINE L1 -5246 873 686 1633 155 53 66 chr21 31454252 31454293 -3453277 - THE1C LTR MaLR 0 375 335 2231 90 4 0 chr21 31454293 31454602 -3452968 + AluY SINE Alu 1 310 0 1633 155 53 66 chr21 31454602 31454939 -3452631 - THE1C LTR MaLR -40 335 1 180 0 0 0 chr21 31455812 31455832 -3451738 + (TC)n Simple_repeat Simple_repeat 1 20 0 2287 102 0 3 chr21 31455832 31456125 -3451445 - AluSc SINE Alu -17 292 1 213 39 0 0 chr21 31479571 31479597 -3427973 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 503 275 76 6 chr21 31481643 31481814 -3425756 - MER5A DNA MER1_type 0 189 7 492 348 40 7 chr21 31482151 31482424 -3425146 - L2 LINE L2 -751 2563 2282 1677 121 0 0 chr21 31482525 31482756 -3424814 + AluSx SINE Alu 1 231 -81 1247 246 39 20 chr21 31483460 31483817 -3423753 - MLT1A1 LTR MaLR 0 365 2 939 221 36 47 chr21 31489608 31489861 -3417709 - MLT1A1 LTR MaLR -7 358 109 346 282 73 42 chr21 31490049 31490308 -3417262 - L2 LINE L2 -228 3085 2819 855 45 0 91 chr21 31490308 31491100 -3416470 + (GGGGA)n Simple_repeat Simple_repeat 1 719 0 814 56 0 64 chr21 31491134 31491378 -3416192 + (GGGGA)n Simple_repeat Simple_repeat 1 228 0 200 275 108 75 chr21 31493144 31493264 -3414306 - MIR3 SINE MIR -43 165 42 241 300 0 89 chr21 31493716 31493806 -3413764 + L2 LINE L2 3175 3256 -16 983 104 23 0 chr21 31493944 31494117 -3413453 + (TCCA)n Simple_repeat Simple_repeat 4 180 0 811 131 23 17 chr21 31494140 31494315 -3413255 + (TCCA)n Simple_repeat Simple_repeat 2 177 0 1108 189 14 1 chr21 31494315 31494575 -3412995 + L1MB7 LINE L1 5621 5882 -289 751 142 31 0 chr21 31494575 31494737 -3412833 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 855 178 0 0 chr21 31494748 31494917 -3412653 + (TCCA)n Simple_repeat Simple_repeat 1 169 0 1512 196 45 0 chr21 31494933 31495265 -3412305 - L1MB5 LINE L1 -205 5969 5623 1375 179 15 0 chr21 31495794 31496067 -3411503 + MLT1B LTR MaLR 3 279 -111 537 143 9 0 chr21 31496067 31496172 -3411398 + MLT1B LTR MaLR 174 279 -111 545 143 9 0 chr21 31496172 31496277 -3411293 + MLT1B LTR MaLR 174 279 -111 540 143 9 0 chr21 31496277 31496382 -3411188 + MLT1B LTR MaLR 174 279 -111 504 162 9 0 chr21 31496382 31496487 -3411083 + MLT1B LTR MaLR 174 279 -111 533 152 9 0 chr21 31496487 31496592 -3410978 + MLT1B LTR MaLR 174 279 -111 1053 174 9 18 chr21 31496592 31496811 -3410759 + MLT1B LTR MaLR 174 390 0 882 165 0 0 chr21 31497099 31497232 -3410338 - FLAM_C SINE Alu 0 133 1 375 190 30 10 chr21 31497242 31497342 -3410228 - L1MD3 LINE L1 -12 7983 7882 320 259 33 12 chr21 31497490 31497651 -3409919 - L1MD3 LINE L1 0 7981 6194 1589 227 91 50 chr21 31497650 31498244 -3409326 - L1MD2 LINE L1 -216 6143 5526 315 320 136 7 chr21 31498247 31498394 -3409176 - L1ME4a LINE L1 -154 5967 5802 377 271 62 13 chr21 31499853 31500124 -3407446 + MLT1G1 LTR MaLR 64 347 -212 336 229 6 38 chr21 31503363 31503546 -3404024 + CT-rich Low_complexity Low_complexity 4 180 0 395 269 37 0 chr21 31503581 31503689 -3403881 - L1MC2 LINE L1 -11 6333 6222 836 216 54 0 chr21 31503726 31503893 -3403677 - L1MC1 LINE L1 -169 6164 5989 189 0 0 0 chr21 31503999 31504020 -3403550 + (TTTTA)n Simple_repeat Simple_repeat 3 23 0 1894 127 21 7 chr21 31504024 31504308 -3403262 - AluSg SINE Alu -22 288 1 255 31 0 0 chr21 31504487 31504519 -3403051 + (TG)n Simple_repeat Simple_repeat 2 33 0 281 337 37 16 chr21 31504528 31504715 -3402855 - L1ME3A LINE L1 -220 5950 5760 486 341 41 30 chr21 31504789 31505182 -3402388 - L1ME3A LINE L1 -503 5659 5263 1045 330 3 10 chr21 31505190 31505502 -3402068 - L1ME3A LINE L1 -892 5254 4945 566 305 72 13 chr21 31505511 31505747 -3401823 - L1ME3A LINE L1 -1224 4922 4673 1595 246 60 37 chr21 31505852 31506416 -3401154 - MLT1G1 LTR MaLR -16 579 3 914 319 79 30 chr21 31506433 31506928 -3400642 - L1ME3 LINE L1 -99 6063 5545 415 284 12 18 chr21 31506965 31507134 -3400436 - L1ME3 LINE L1 -888 5456 5289 646 289 60 93 chr21 31507180 31507792 -3399778 - MER21B LTR ERV1 -170 693 102 188 238 0 10 chr21 31508999 31509100 -3398470 + (CA)n Simple_repeat Simple_repeat 2 101 0 348 260 40 28 chr21 31509178 31509355 -3398215 + (CACG)n Simple_repeat Simple_repeat 1 179 0 1766 126 40 18 chr21 31510910 31511210 -3396360 - AluSx SINE Alu 0 306 1 1614 205 78 14 chr21 31514025 31514450 -3393120 - MER66A LTR ERV1 0 478 27 1514 226 69 0 chr21 31514538 31514900 -3392670 + MLT1B LTR MaLR 4 390 0 685 228 72 42 chr21 31515963 31516200 -3391370 - MLT1C LTR MaLR -208 259 16 312 232 14 14 chr21 31519259 31519279 -3388291 - L1MB7 LINE L1 -286 5898 5879 1809 226 17 0 chr21 31519279 31519633 -3387937 - L1MB3 LINE L1 0 6183 5824 312 232 14 14 chr21 31519633 31519681 -3387889 - L1MB7 LINE L1 -304 5880 5830 1375 220 10 3 chr21 31519682 31519986 -3387584 - L1MB3 LINE L1 -301 5882 5577 511 352 95 55 chr21 31520769 31521241 -3386329 + L1MC4a LINE L1 4743 5233 -913 413 254 72 29 chr21 31521272 31521548 -3386022 + L1MC4a LINE L1 5266 5553 -2255 401 284 25 41 chr21 31521600 31521797 -3385773 + L1MC4a LINE L1 5646 5839 -1969 644 235 59 103 chr21 31521890 31522231 -3385339 - MLT1B LTR MaLR -12 378 53 2152 153 48 0 chr21 31522281 31522698 -3384872 - LTR56 LTR ERV1 -1 444 8 24 0 0 0 chr21 31523016 31523040 -3384530 + AT_rich Low_complexity Low_complexity 1 24 0 306 267 24 2 chr21 31523785 31523941 -3383629 + MER20 DNA MER1_type 1 192 -27 235 29 29 0 chr21 31525268 31525303 -3382267 + AluY SINE Alu 1 36 -97 2442 74 3 0 chr21 31525303 31525615 -3381955 + AluSp SINE Alu 1 313 0 230 263 110 17 chr21 31526477 31526595 -3380975 - MIR SINE MIR -78 184 56 677 218 85 24 chr21 31527258 31527469 -3380101 + MLT1D LTR MaLR 19 242 -263 235 286 31 31 chr21 31527638 31527678 -3379892 + MLT1D LTR MaLR 401 440 -65 1770 170 0 25 chr21 31527678 31527995 -3379575 - AluJo SINE Alu -3 309 1 235 286 31 31 chr21 31527995 31528052 -3379518 + MLT1D LTR MaLR 439 498 -7 1026 236 71 26 chr21 31528364 31528715 -3378855 - MLT1A2 LTR MaLR -7 367 1 542 202 24 24 chr21 31528716 31528840 -3378730 - MLT1J LTR MaLR -282 229 106 311 227 0 0 chr21 31528954 31529020 -3378550 - MLT1J LTR MaLR -196 315 250 1334 241 133 7 chr21 31530743 31531157 -3376413 + MLT1C LTR MaLR 2 467 0 456 227 36 9 chr21 31533344 31533454 -3374116 + L2 LINE L2 3201 3313 0 409 216 10 10 chr21 31534761 31534863 -3372707 - MLT1C LTR MaLR -6 461 360 311 259 69 52 chr21 31536718 31536834 -3370736 - L1ME4a LINE L1 -188 5933 5816 287 100 0 0 chr21 31537640 31537680 -3369890 + Alu SINE Alu 1 40 -262 1594 155 14 7 chr21 31537689 31537967 -3369603 + AluJb SINE Alu 1 280 -32 207 0 0 0 chr21 31537967 31537990 -3369580 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 453 239 87 33 chr21 31538530 31538714 -3368856 - L1MC4a LINE L1 -1785 6023 5830 1230 268 70 7 chr21 31538976 31539405 -3368165 + MLT1C LTR MaLR 6 461 -6 366 308 15 15 chr21 31540970 31541100 -3366470 + MIR SINE MIR 25 154 -108 611 275 20 5 chr21 31542166 31542366 -3365204 - MLT1K LTR MaLR -11 577 375 506 207 0 7 chr21 31542964 31543114 -3364456 + (TG)n Simple_repeat Simple_repeat 1 149 0 293 242 13 157 chr21 31543856 31544009 -3363561 - L2 LINE L2 0 3313 3183 219 273 114 0 chr21 31544169 31544257 -3363313 - L2 LINE L2 -618 2696 2599 323 325 89 30 chr21 31544339 31544542 -3363028 - L2 LINE L2 -873 2441 2227 202 246 28 7 chr21 31544952 31545094 -3362476 + (TG)n Simple_repeat Simple_repeat 1 145 0 283 222 9 9 chr21 31545182 31545290 -3362280 + (TG)n Simple_repeat Simple_repeat 2 109 0 2022 117 28 0 chr21 31545306 31545597 -3361973 + AluSx SINE Alu 1 299 -13 1209 117 1 0 chr21 31546317 31547107 -3360463 + (CCA)n Simple_repeat Simple_repeat 1 791 0 1221 115 0 2 chr21 31547125 31547462 -3360108 + (CCA)n Simple_repeat Simple_repeat 1 337 -748 1023 139 0 0 chr21 31547462 31547642 -3359928 + (CACCAT)n Simple_repeat Simple_repeat 1 180 0 1221 115 0 2 chr21 31547642 31548033 -3359537 + (CCA)n Simple_repeat Simple_repeat 337 1085 0 392 239 0 18 chr21 31548395 31548508 -3359062 + LTR33 LTR ERVL 403 513 -8 207 0 0 0 chr21 31548897 31548920 -3358650 + (CACGT)n Simple_repeat Simple_repeat 5 27 0 297 138 15 31 chr21 31550033 31550098 -3357472 + MLT1D LTR MaLR 20 83 -543 634 257 44 4 chr21 31550232 31550458 -3357112 + MLT1D LTR MaLR 253 487 -18 861 217 3 0 chr21 31552718 31553061 -3354509 + (CA)n Simple_repeat Simple_repeat 1 344 0 426 257 19 0 chr21 31555529 31555634 -3351936 - MER63 DNA MER1_type -276 785 679 223 275 0 43 chr21 31560498 31560567 -3347003 + C-rich Low_complexity Low_complexity 3 68 0 400 172 103 0 chr21 31560930 31561017 -3346553 + MER81 DNA DNA 4 99 -15 435 249 12 30 chr21 31561525 31561690 -3345880 - L1ME4a LINE L1 -1 6120 5959 444 19 0 0 chr21 31561712 31561765 -3345805 + (TG)n Simple_repeat Simple_repeat 2 54 0 666 223 69 17 chr21 31561774 31561949 -3345621 + MER74B LTR ERVL 2 185 -437 508 275 83 9 chr21 31561948 31562166 -3345404 + MER74A LTR ERVL 149 382 -176 566 244 17 17 chr21 31562858 31563030 -3344540 - MER93b LTR ERV1 -4 369 198 469 298 46 0 chr21 31563235 31563386 -3344184 - MER93a LTR ERV1 -153 249 92 1177 183 29 43 chr21 31563553 31563832 -3343738 + MLT1C LTR MaLR 1 275 -192 296 294 28 0 chr21 31565017 31565126 -3342444 + LTR33A LTR ERVL 407 518 -5 203 244 0 0 chr21 31565372 31565417 -3342153 + (CA)n Simple_repeat Simple_repeat 1 45 0 341 396 112 18 chr21 31565484 31565769 -3341801 + L1MC4a LINE L1 5587 5898 -1910 1372 116 5 0 chr21 31567362 31567560 -3340010 - AluSg/x SINE Alu -14 296 98 949 50 50 0 chr21 31567592 31567713 -3339857 + AluSq/x SINE Alu 1 127 -186 369 0 0 0 chr21 31567755 31567796 -3339774 + (TAA)n Simple_repeat Simple_repeat 2 42 0 193 360 110 0 chr21 31568162 31568262 -3339308 - MIR SINE MIR -117 145 35 247 273 0 0 chr21 31568742 31568808 -3338762 - LTR16C LTR ERVL -11 480 415 1267 212 48 80 chr21 31568814 31569214 -3338356 + MLT1B LTR MaLR 3 389 -1 221 0 35 0 chr21 31570034 31570063 -3337507 + (CA)n Simple_repeat Simple_repeat 2 31 0 282 93 0 0 chr21 31570201 31570244 -3337326 - MER57B LTR ERV1 -66 368 326 207 171 0 0 chr21 31575978 31576013 -3331557 + GA-rich Low_complexity Low_complexity 1 35 0 1059 112 30 12 chr21 31576699 31576868 -3330702 + L1MC1 LINE L1 6162 6333 0 995 244 54 67 chr21 31577471 31577931 -3329639 + MLT1C LTR MaLR 8 461 -6 579 277 15 0 chr21 31578945 31579075 -3328495 + L1MD2 LINE L1 6215 6346 -13 576 204 0 25 chr21 31579106 31579434 -3328136 + (TG)n Simple_repeat Simple_repeat 1 319 0 420 231 8 60 chr21 31581106 31581223 -3326347 + MER103 DNA DNA 4 114 -52 6076 97 19 22 chr21 31581286 31582160 -3325410 + MER4D LTR ERV1 1 872 0 249 372 0 0 chr21 31582364 31582466 -3325104 + L2 LINE L2 3145 3246 -26 249 260 0 27 chr21 31584287 31584360 -3323210 + MER53 DNA DNA 119 189 0 1001 211 0 5 chr21 31585989 31586198 -3321372 - MSTB2 LTR MaLR 0 457 250 2342 79 7 0 chr21 31587673 31587977 -3319593 - AluSc SINE Alu -3 306 1 333 202 9 18 chr21 31590793 31590902 -3316668 + (TG)n Simple_repeat Simple_repeat 2 109 0 2235 82 14 0 chr21 31594481 31594774 -3312796 - AluSp SINE Alu -16 297 1 269 250 0 0 chr21 31595196 31595268 -3312302 + (TG)n Simple_repeat Simple_repeat 1 72 0 195 139 39 44 chr21 31595461 31595641 -3311929 + (TG)n Simple_repeat Simple_repeat 1 179 0 214 171 56 8 chr21 31595733 31595993 -3311577 + (TG)n Simple_repeat Simple_repeat 1 272 0 314 209 67 0 chr21 31596008 31596142 -3311428 + (TG)n Simple_repeat Simple_repeat 1 143 0 232 175 60 6 chr21 31596154 31596320 -3311250 + (TG)n Simple_repeat Simple_repeat 1 175 0 511 174 51 29 chr21 31597734 31597872 -3309698 + MER96B DNA MER1_type? 29 169 -248 389 70 18 0 chr21 31598241 31598298 -3309272 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 925 255 88 3 chr21 31599540 31599858 -3307712 - MLT2C1 LTR ERVL -38 359 15 1527 216 45 69 chr21 31601168 31601616 -3305954 - MLT1F1 LTR MaLR 0 567 131 1490 235 141 22 chr21 31601650 31602110 -3305460 + MLT2B2 LTR ERVL 1 515 0 1944 126 41 3 chr21 31602605 31602899 -3304671 + AluSg SINE Alu 1 305 -5 2219 115 0 19 chr21 31603968 31604282 -3303288 + AluSc SINE Alu 1 308 -1 770 128 13 19 chr21 31604288 31604444 -3303126 + GA-rich Low_complexity Low_complexity 4 158 0 2010 136 44 20 chr21 31604445 31604835 -3302735 - MSTA LTR MaLR -29 399 1 183 200 127 18 chr21 31605789 31605844 -3301726 - L2 LINE L2 -10 3303 3243 580 261 80 40 chr21 31606117 31606366 -3301204 + MLT1K LTR MaLR 320 578 -10 208 244 0 0 chr21 31609153 31609198 -3298372 + (TG)n Simple_repeat Simple_repeat 1 45 0 201 191 16 48 chr21 31610996 31611059 -3296511 + (CCCTG)n Simple_repeat Simple_repeat 1 61 0 981 240 76 48 chr21 31612005 31612401 -3295169 - MLT1C LTR MaLR -60 407 1 190 212 0 0 chr21 31613236 31613269 -3294301 + MIR SINE MIR 114 146 -116 2808 108 10 2 chr21 31615603 31615641 -3291929 + L1PB1 LINE L1 5750 5786 -365 243 0 0 0 chr21 31615641 31615668 -3291902 + (TA)n Simple_repeat Simple_repeat 2 28 0 2808 108 10 2 chr21 31615668 31616026 -3291544 + L1PB1 LINE L1 5786 6149 -2 324 356 44 16 chr21 31616044 31616364 -3291206 + L1ME2 LINE L1 2153 2481 -3665 1223 287 47 48 chr21 31616588 31616710 -3290860 + L1ME2 LINE L1 2808 2929 -3217 2373 80 0 0 chr21 31616710 31617009 -3290561 - AluSx SINE Alu -13 299 1 1223 287 47 48 chr21 31617009 31617421 -3290149 + L1ME2 LINE L1 2929 3343 -2803 1909 148 10 13 chr21 31617421 31617731 -3289839 + AluSx SINE Alu 1 309 -3 1223 287 47 48 chr21 31617731 31617979 -3289591 + L1ME2 LINE L1 3343 3590 -2556 1793 257 51 53 chr21 31617998 31618160 -3289410 + L1ME2 LINE L1 4620 4781 -1383 2507 62 0 0 chr21 31618160 31618468 -3289102 + AluY SINE Alu 1 308 -3 1793 257 51 53 chr21 31618468 31619050 -3288520 + L1ME2 LINE L1 4781 5362 -802 1857 136 20 17 chr21 31619050 31619345 -3288225 + AluJb SINE Alu 5 300 -12 1793 257 51 53 chr21 31619345 31620112 -3287458 + L1ME2 LINE L1 5362 6130 -34 201 74 0 0 chr21 31620450 31620477 -3287093 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 668 87 27 54 chr21 31620576 31620760 -3286810 + (TCCC)n Simple_repeat Simple_repeat 2 180 0 374 182 36 0 chr21 31620774 31620884 -3286686 + CT-rich Low_complexity Low_complexity 3 116 0 206 231 0 0 chr21 31622250 31622289 -3285281 + (CACCAT)n Simple_repeat Simple_repeat 3 41 0 1957 127 19 13 chr21 31623164 31623471 -3284099 + AluSx SINE Alu 3 311 -1 775 231 36 0 chr21 31623471 31623696 -3283874 - L1MB3 LINE L1 -24 6159 5927 1077 272 50 11 chr21 31623697 31623826 -3283744 - L1MB3 LINE L1 -275 5908 5786 2171 89 7 3 chr21 31623826 31624117 -3283453 - AluSp SINE Alu -10 303 12 1077 272 50 11 chr21 31624117 31624365 -3283205 - L1MB3 LINE L1 -397 5786 5516 31 0 0 0 chr21 31624914 31624945 -3282625 + AT_rich Low_complexity Low_complexity 1 31 0 207 0 0 0 chr21 31625510 31625533 -3282037 + (CAG)n Simple_repeat Simple_repeat 2 24 0 264 59 0 0 chr21 31626720 31626754 -3280816 + (CA)n Simple_repeat Simple_repeat 1 34 0 1834 131 28 7 chr21 31632755 31633037 -3274533 + AluSx SINE Alu 1 288 -24 2150 95 20 16 chr21 31633495 31633799 -3273771 + AluSx SINE Alu 2 306 -6 2379 79 0 0 chr21 31634072 31634376 -3273194 + AluY SINE Alu 1 304 -7 266 328 6 22 chr21 31636891 31637074 -3270496 + C-rich Low_complexity Low_complexity 1 180 0 27 73 0 0 chr21 31637300 31637355 -3270215 + GC_rich Low_complexity Low_complexity 1 55 0 278 132 19 0 chr21 31637358 31637411 -3270159 + (CCG)n Simple_repeat Simple_repeat 1 54 0 211 259 26 26 chr21 31637429 31637545 -3270025 + (CCG)n Simple_repeat Simple_repeat 3 118 0 235 109 0 47 chr21 31637551 31637615 -3269955 + (CCCCG)n Simple_repeat Simple_repeat 4 64 0 23 0 0 0 chr21 31637615 31637638 -3269932 + GC_rich Low_complexity Low_complexity 1 23 0 43 85 0 0 chr21 31637784 31637890 -3269680 + GC_rich Low_complexity Low_complexity 1 106 0 21 82 0 0 chr21 31638025 31638074 -3269496 + GC_rich Low_complexity Low_complexity 1 49 0 27 29 0 0 chr21 31638207 31638241 -3269329 + GC_rich Low_complexity Low_complexity 1 34 0 369 0 0 0 chr21 31638711 31638752 -3268818 + (CA)n Simple_repeat Simple_repeat 1 41 0 1671 205 0 0 chr21 31638978 31639280 -3268290 + AluJb SINE Alu 1 302 -10 248 282 68 10 chr21 31641799 31641902 -3265668 - L2 LINE L2 -26 3246 3138 2322 57 27 0 chr21 31643336 31643632 -3263938 + AluY SINE Alu 5 308 -3 2372 100 0 0 chr21 31644769 31645079 -3262491 - AluSx SINE Alu -2 310 1 285 246 0 0 chr21 31645175 31645293 -3262277 + (CTG)n Simple_repeat Simple_repeat 3 120 0 1460 252 123 14 chr21 31645452 31645873 -3261697 - MLT1C LTR MaLR 0 467 1 820 183 12 12 chr21 31647205 31647374 -3260196 + L1MB3 LINE L1 5427 5595 -576 2406 182 59 0 chr21 31647397 31647841 -3259729 + L1MB3 LINE L1 5713 6182 -1 2152 106 10 0 chr21 31648401 31648704 -3258866 - AluSq SINE Alu -7 306 1 36 0 0 0 chr21 31648731 31648767 -3258803 + AT_rich Low_complexity Low_complexity 1 36 0 603 273 7 0 chr21 31648787 31648930 -3258640 + MSTD LTR MaLR 1 144 -252 30 59 0 0 chr21 31649067 31649118 -3258452 + AT_rich Low_complexity Low_complexity 1 51 0 22 0 0 0 chr21 31649204 31649226 -3258344 + AT_rich Low_complexity Low_complexity 1 22 0 424 359 49 45 chr21 31649282 31649547 -3258023 - L1ME3 LINE L1 -323 5839 5574 334 257 89 75 chr21 31649571 31649635 -3257935 - L1ME3 LINE L1 -659 5503 5441 1711 221 62 20 chr21 31649635 31650083 -3257487 - MLT1C LTR MaLR 0 467 1 334 257 89 75 chr21 31650083 31650205 -3257365 - L1ME3 LINE L1 -721 5441 5310 805 290 71 34 chr21 31650208 31650455 -3257115 - MLT1K LTR MaLR -1 587 350 1792 165 83 81 chr21 31650455 31650671 -3256899 + MSTD LTR MaLR 1 220 -176 414 0 0 0 chr21 31650671 31650717 -3256853 + (TG)n Simple_repeat Simple_repeat 1 46 0 1792 165 83 81 chr21 31650717 31650895 -3256675 + MSTD LTR MaLR 220 396 0 805 290 71 34 chr21 31650895 31651140 -3256430 - MLT1K LTR MaLR -238 350 7 212 342 0 0 chr21 31652324 31652397 -3255173 + (TG)n Simple_repeat Simple_repeat 1 73 0 349 344 0 17 chr21 31653416 31653596 -3253974 + (TG)n Simple_repeat Simple_repeat 2 178 0 219 224 0 0 chr21 31653637 31653713 -3253857 + (TG)n Simple_repeat Simple_repeat 1 76 0 246 279 16 16 chr21 31655139 31655268 -3252302 + (TG)n Simple_repeat Simple_repeat 1 129 0 865 210 25 0 chr21 31657608 31657770 -3249800 - FRAM SINE Alu 0 166 1 751 281 64 57 chr21 31658062 31658482 -3249088 - MLT1C LTR MaLR -36 431 9 1439 226 62 14 chr21 31659456 31659827 -3247743 - MLT1B LTR MaLR -1 389 1 819 229 43 13 chr21 31664725 31664988 -3242582 + MLT1C LTR MaLR 1 281 -180 310 288 73 93 chr21 31665894 31666099 -3241471 + L1ME2 LINE L1 5963 6163 -1 1826 197 108 5 chr21 31669440 31669877 -3237693 + MER31A LTR ERV1 1 482 -3 201 314 43 0 chr21 31671495 31671565 -3236005 - L2 LINE L2 -175 3097 3025 2235 110 0 0 chr21 31672955 31673264 -3234306 + AluSg SINE Alu 1 309 -1 313 204 34 23 chr21 31673777 31673880 -3233690 + L1MC2 LINE L1 6230 6336 -3 534 283 71 51 chr21 31675359 31675793 -3231777 + L1MC5 LINE L1 7352 7794 -167 2232 100 7 3 chr21 31676177 31676478 -3231092 + AluSx SINE Alu 1 302 -10 355 42 117 0 chr21 31678067 31678187 -3229383 + (CA)n Simple_repeat Simple_repeat 1 134 0 698 42 100 12 chr21 31678200 31678530 -3229040 + (CA)n Simple_repeat Simple_repeat 1 359 0 325 162 69 35 chr21 31678575 31678748 -3228822 + (CA)n Simple_repeat Simple_repeat 1 179 0 360 162 52 45 chr21 31678779 31678933 -3228637 + (CA)n Simple_repeat Simple_repeat 1 155 0 413 164 50 0 chr21 31678962 31679102 -3228468 + (TG)n Simple_repeat Simple_repeat 2 148 0 1297 229 71 109 chr21 31682120 31682696 -3224874 + MLT2B3 LTR ERVL 1 554 0 1650 269 44 41 chr21 31683141 31683345 -3224225 + L1ME LINE L1 444 646 -5434 2376 75 0 0 chr21 31683345 31683640 -3223930 + AluSg SINE Alu 1 295 -15 1650 269 44 41 chr21 31683640 31683997 -3223573 + L1ME LINE L1 646 1000 -5080 2366 97 3 0 chr21 31683997 31684308 -3223262 + AluSx SINE Alu 1 312 0 1650 269 44 41 chr21 31684308 31684664 -3222906 + L1ME LINE L1 1000 1366 -4714 1876 220 23 20 chr21 31684657 31685144 -3222426 + L1MC2 LINE L1 5832 6319 -25 2079 134 0 0 chr21 31685188 31685487 -3222083 - AluSx SINE Alu -9 303 5 454 239 18 36 chr21 31685537 31685582 -3221988 + L1ME LINE L1 1351 1395 -4685 681 113 0 0 chr21 31685582 31685679 -3221891 - L1PA5 LINE L1 0 6154 6058 454 239 18 36 chr21 31685679 31685800 -3221770 + L1ME LINE L1 1395 1514 -4566 2277 86 0 0 chr21 31685956 31686246 -3221324 + AluSx SINE Alu 1 290 -22 435 52 0 0 chr21 31686247 31686305 -3221265 + (CA)n Simple_repeat Simple_repeat 2 59 0 445 227 69 23 chr21 31687640 31688041 -3219529 + MLT1C LTR MaLR 21 452 -15 1386 184 24 0 chr21 31691104 31691354 -3216216 + AluJo SINE Alu 30 285 -27 183 327 93 28 chr21 31691427 31691534 -3216036 + L2 LINE L2 1383 1496 -1818 2131 104 4 0 chr21 31692332 31692636 -3214934 + AluSg SINE Alu 1 305 0 331 155 0 0 chr21 31693251 31693309 -3214261 - AluS SINE Alu -250 58 1 1961 145 3 10 chr21 31693381 31693684 -3213886 + AluSx SINE Alu 1 301 -11 232 261 64 25 chr21 31693684 31693841 -3213729 - L1MEd LINE L1 -5053 1066 904 425 219 10 0 chr21 31694020 31694116 -3213454 - L1MB5 LINE L1 0 6174 6078 338 193 10 91 chr21 31694629 31694760 -3212810 + MIR SINE MIR 56 172 -36 1596 197 54 11 chr21 31695815 31696165 -3211405 - MLT1A1 LTR MaLR 0 365 1 379 258 88 16 chr21 31697573 31697671 -3209899 + L1MC4a LINE L1 5732 5822 -1986 2166 121 0 0 chr21 31697671 31697976 -3209594 + AluSx SINE Alu 1 305 -7 379 258 88 16 chr21 31697976 31698059 -3209511 + L1MC4a LINE L1 5822 5926 -1882 302 248 31 31 chr21 31698261 31698390 -3209180 + LTR16C LTR ERVL 363 491 0 919 333 111 0 chr21 31698669 31699029 -3208541 + L1MB7 LINE L1 5696 6095 -89 1725 168 96 8 chr21 31699710 31700097 -3207473 - MSTA LTR MaLR -5 423 3 225 293 23 11 chr21 31700193 31700367 -3207203 + A-rich Low_complexity Low_complexity 4 179 0 2113 120 0 22 chr21 31700469 31700786 -3206784 + AluSx SINE Alu 1 310 -2 1678 181 18 0 chr21 31701203 31701485 -3206085 - AluJo SINE Alu -25 287 1 385 309 70 63 chr21 31701488 31701963 -3205607 - L1MC5 LINE L1 -30 7931 7454 523 193 144 50 chr21 31702239 31702330 -3205240 - L1MC5 LINE L1 -736 7225 7144 2537 50 0 0 chr21 31702330 31702630 -3204940 - AluY SINE Alu -11 300 1 523 193 144 50 chr21 31702630 31702719 -3204851 - L1MC5 LINE L1 -817 7144 7028 227 265 73 0 chr21 31703689 31703757 -3203813 - MIR SINE MIR -107 155 83 285 98 0 0 chr21 31706396 31706437 -3201133 + (CA)n Simple_repeat Simple_repeat 2 42 0 2359 226 60 52 chr21 31706480 31706987 -3200583 + L1MB3 LINE L1 4165 4682 -1464 1382 154 150 23 chr21 31706987 31707114 -3200456 - AluJo SINE Alu -1 301 192 1543 112 90 0 chr21 31707114 31707337 -3200233 - AluSc SINE Alu -66 243 1 1382 154 150 23 chr21 31707337 31707475 -3200095 - AluJo SINE Alu -110 192 2 2359 226 60 52 chr21 31707475 31707789 -3199781 + L1MB3 LINE L1 4682 4992 -1154 847 147 0 0 chr21 31707789 31707905 -3199665 + FLAM_C SINE Alu 2 117 -16 484 171 0 0 chr21 31707935 31708023 -3199547 + L1MB3 LINE L1 5776 5863 -320 1927 149 0 3 chr21 31708038 31708334 -3199236 - AluSx SINE Alu -17 295 1 247 288 96 0 chr21 31709137 31709210 -3198360 + Charlie7 DNA MER1_type 610 689 -1923 512 149 51 34 chr21 31710115 31710290 -3197280 + (CA)n Simple_repeat Simple_repeat 1 178 0 334 153 52 24 chr21 31710353 31710607 -3196963 + (CA)n Simple_repeat Simple_repeat 1 261 0 2638 171 14 41 chr21 31711539 31711783 -3195787 + MER44D DNA MER2_type 6 255 -2232 2277 92 3 25 chr21 31711783 31712098 -3195472 - AluSx SINE Alu -4 308 1 2638 171 14 41 chr21 31712098 31712413 -3195157 + MER44D DNA MER2_type 255 605 0 480 184 70 9 chr21 31712470 31712584 -3194986 - MLT1C LTR MaLR -344 123 3 411 230 81 0 chr21 31714026 31714113 -3193457 - L1M4 LINE L1 -1055 5091 4998 615 259 68 4 chr21 31714114 31714350 -3193220 - L1M4 LINE L1 -1157 4989 4739 559 346 103 22 chr21 31715989 31716301 -3191269 - L1ME LINE L1 -563 5603 5267 2871 107 36 11 chr21 31717532 31718007 -3189563 + LTR15 LTR ERV1 1 487 -6 412 349 61 0 chr21 31719540 31719738 -3187832 + L3 LINE CR1 1220 1429 -148 425 252 54 0 chr21 31720072 31720183 -3187387 + MER103 DNA DNA 7 123 -43 2703 132 59 2 chr21 31720244 31720668 -3186902 - MER83 LTR ERV1 0 448 1 787 195 28 51 chr21 31721620 31721835 -3185735 + MLT2C1 LTR ERVL 122 331 -66 189 300 88 61 chr21 31722225 31722522 -3185048 - L2 LINE L2 -2130 1184 880 331 353 0 0 chr21 31722901 31723034 -3184536 + (CA)n Simple_repeat Simple_repeat 2 134 0 1517 149 67 7 chr21 31724164 31724433 -3183137 + AluJo SINE Alu 21 305 -7 248 229 0 14 chr21 31728372 31728442 -3179128 + (CAGAGA)n Simple_repeat Simple_repeat 6 74 0 462 191 0 0 chr21 31728459 31728585 -3178985 + (CA)n Simple_repeat Simple_repeat 1 126 0 500 16 0 16 chr21 31729001 31729064 -3178506 + MER4A LTR ERV1 1 62 -602 3050 106 90 29 chr21 31729064 31729641 -3177929 + MER4B LTR ERV1 1 779 0 1756 41 105 95 chr21 31729641 31729911 -3177659 + MER4A LTR ERV1 59 334 -330 2192 90 0 17 chr21 31729911 31730212 -3177358 + AluSq SINE Alu 1 296 -17 2149 130 12 42 chr21 31730212 31730600 -3176970 + MER4A LTR ERV1 179 664 0 1988 145 0 0 chr21 31731713 31732024 -3175546 - AluSx SINE Alu -1 311 1 180 0 0 0 chr21 31733253 31733273 -3174297 + (T)n Simple_repeat Simple_repeat 1 20 0 207 200 105 57 chr21 31733350 31733455 -3174115 + L2 LINE L2 2874 2983 -330 1802 141 30 7 chr21 31733685 31733990 -3173580 + AluJb SINE Alu 1 312 0 4430 198 34 12 chr21 31734108 31735340 -3172230 + L1MB4 LINE L1 4903 6168 -12 4915 124 61 61 chr21 31735859 31736762 -3170808 + MER4D LTR ERV1 1 903 0 2035 109 3 3 chr21 31737241 31737534 -3170036 + AluSx SINE Alu 2 294 -18 1944 116 0 7 chr21 31737538 31737843 -3169727 + AluSq SINE Alu 1 303 0 1999 138 43 27 chr21 31738813 31739182 -3168388 + THE1C LTR MaLR 1 375 0 2012 109 0 77 chr21 31740387 31740725 -3166845 - AluSx SINE Alu 0 312 1 4227 113 120 7 chr21 31740969 31741669 -3165901 + MER4E LTR ERV1 1 779 0 22 0 0 0 chr21 31742071 31742093 -3165477 + AT_rich Low_complexity Low_complexity 1 22 0 515 225 197 6 chr21 31742386 31742564 -3165006 + L1ME LINE L1 1065 1276 -5147 399 216 14 0 chr21 31742595 31742669 -3164901 + MER58C DNA MER1_type 17 91 -124 446 125 12 0 chr21 31742690 31742770 -3164800 + (TCC)n Simple_repeat Simple_repeat 1 81 0 1379 208 3 7 chr21 31742770 31743058 -3164512 - AluJo SINE Alu -25 287 1 523 175 79 32 chr21 31743061 31743187 -3164383 + MER58C DNA MER1_type 80 211 -4 287 232 116 49 chr21 31743191 31743252 -3164318 + L1ME LINE L1 1284 1339 -5084 2174 109 0 0 chr21 31743252 31743589 -3163981 + AluSg SINE Alu 1 310 0 287 232 116 49 chr21 31743589 31743691 -3163879 + L1ME LINE L1 1339 1458 -4965 6250 213 50 27 chr21 31743782 31745768 -3161802 + L1ME LINE L1 4322 6350 -611 2177 95 0 0 chr21 31745768 31746184 -3161386 + AluSx SINE Alu 1 416 0 6250 213 50 27 chr21 31746184 31746257 -3161313 + L1ME LINE L1 6350 6420 -541 331 209 45 0 chr21 31746284 31746351 -3161219 + L1ME1 LINE L1 6092 6161 -5 2049 125 0 3 chr21 31746379 31746683 -3160887 + AluSx SINE Alu 1 303 -9 2014 113 3 0 chr21 31746766 31747072 -3160498 - AluSx SINE Alu 0 307 1 1411 271 84 31 chr21 31747088 31747722 -3159848 + HAL1 LINE L1 473 1139 -1368 777 278 107 65 chr21 31748008 31748849 -3158721 + L2 LINE L2 1698 2692 -622 1141 119 0 0 chr21 31748854 31749044 -3158526 - AluSg/x SINE Alu 0 309 120 286 394 79 4 chr21 31749047 31749288 -3158282 + L2 LINE L2 2697 2955 -359 5430 90 13 13 chr21 31749328 31750094 -3157476 + MER4E LTR ERV1 1 766 0 435 219 160 0 chr21 31750094 31750213 -3157357 + L1MCb LINE L1 5 142 -5903 2869 221 100 35 chr21 31750256 31751089 -3156481 + L1MCb LINE L1 207 1093 -4952 1909 163 22 75 chr21 31751090 31751502 -3156068 - MLT1B LTR MaLR 0 390 1 286 189 54 0 chr21 31751505 31751579 -3155991 + L1MCb LINE L1 1094 1171 -5393 211 211 0 0 chr21 31751759 31751797 -3155773 + L2 LINE L2 3234 3271 -1 447 209 56 75 chr21 31752251 31752557 -3155013 + L1MCb LINE L1 1148 1465 -5099 12609 181 32 17 chr21 31752556 31756684 -3150886 + L1MB7 LINE L1 3 4229 -2938 1308 219 7 20 chr21 31756684 31756985 -3150585 + AluJo SINE Alu 1 297 -15 12609 181 32 17 chr21 31756985 31758503 -3149067 + L1MB7 LINE L1 4229 5724 -1443 2359 162 87 6 chr21 31758556 31759030 -3148540 + L1MB7 LINE L1 6694 7205 0 666 204 85 43 chr21 31759025 31759206 -3148364 + L1MD3 LINE L1 7768 7961 -34 1934 100 54 0 chr21 31759206 31759485 -3148085 + AluSx SINE Alu 1 294 -18 666 204 85 43 chr21 31759485 31759514 -3148056 + L1MD3 LINE L1 7961 7987 -8 593 272 39 51 chr21 31759495 31759749 -3147821 - L1ME2 LINE L1 -7 6157 5907 233 151 19 19 chr21 31761514 31761567 -3146003 + L2 LINE L2 2921 2973 -299 393 230 40 20 chr21 31762220 31762320 -3145250 + L2 LINE L2 3180 3281 -32 782 272 52 5 chr21 31762366 31762674 -3144896 + L1ME1 LINE L1 4391 4710 -1436 1470 258 62 20 chr21 31762978 31763632 -3143938 + L1ME1 LINE L1 5121 5801 -369 1955 173 15 0 chr21 31763632 31763956 -3143614 + Tigger4(Zombi) DNA MER2_type 1 329 -2402 2526 129 11 0 chr21 31763961 31764341 -3143229 + Tigger4(Zombi) DNA MER2_type 2348 2731 0 878 172 86 43 chr21 31764351 31764560 -3143010 + MER20 DNA MER1_type 1 218 -1 321 232 125 0 chr21 31764576 31764688 -3142882 + L1ME1 LINE L1 5818 5943 -223 2000 141 0 0 chr21 31764865 31765164 -3142406 + AluSx SINE Alu 1 299 -13 13798 170 46 25 chr21 31765171 31767010 -3140560 + L1MA4A LINE L1 5 1803 -5202 2655 96 8 39 chr21 31767010 31767397 -3140173 - THE1C LTR MaLR 0 375 1 13798 170 46 25 chr21 31767397 31769872 -3137698 + L1MA4A LINE L1 1803 4223 -2782 2288 107 0 0 chr21 31769872 31770182 -3137388 + AluSg SINE Alu 1 310 0 13798 170 46 25 chr21 31770182 31772744 -3134826 + L1MA4A LINE L1 4223 7000 -5 249 289 0 24 chr21 31772749 31772832 -3134738 + GA-rich Low_complexity Low_complexity 4 84 0 2313 117 42 25 chr21 31774058 31774416 -3133154 - THE1B LTR MaLR 0 364 1 8813 97 12 0 chr21 31774416 31775568 -3132002 - THE1B-int LTR MaLR 0 1580 415 253 231 90 75 chr21 31776352 31776486 -3131084 + L1ME LINE L1 5505 5640 -481 3269 63 7 12 chr21 31776590 31777021 -3130549 - THE1B-int LTR MaLR -1151 429 1 2240 104 41 44 chr21 31777021 31777386 -3130184 - THE1B LTR MaLR 0 364 1 204 40 0 0 chr21 31778032 31778057 -3129513 + (A)n Simple_repeat Simple_repeat 1 25 0 330 264 14 86 chr21 31778374 31778514 -3129056 - MARNA DNA Mariner -56 530 401 1959 112 47 7 chr21 31778616 31778912 -3128658 + AluSg SINE Alu 1 308 -2 272 283 58 33 chr21 31779027 31779147 -3128423 + L2 LINE L2 1946 2068 -1246 332 290 63 51 chr21 31779232 31779482 -3128088 + L2 LINE L2 2780 3029 -284 308 208 56 72 chr21 31779518 31779643 -3127927 + L2 LINE L2 3121 3243 -70 2337 87 3 0 chr21 31779957 31780267 -3127303 - AluSx SINE Alu 0 312 2 279 264 97 45 chr21 31781048 31781203 -3126367 + MIR SINE MIR 46 208 -54 219 250 12 62 chr21 31783512 31783592 -3123978 + MIR SINE MIR 15 90 -172 2473 65 0 0 chr21 31784739 31785045 -3122525 - AluY SINE Alu -5 306 1 2114 120 3 0 chr21 31786225 31786526 -3121044 + AluSx SINE Alu 1 302 -10 405 211 0 0 chr21 31787268 31787344 -3120226 - MER116 DNA Mariner -4 76 1 235 232 73 24 chr21 31787772 31787854 -3119716 - MLT1L LTR MaLR -18 597 512 1197 171 87 128 chr21 31788039 31788508 -3119062 + LTR7 LTR ERV1 1 450 0 373 254 36 64 chr21 31788620 31788730 -3118840 + MER5B DNA MER1_type 7 113 -65 352 313 71 16 chr21 31790524 31790706 -3116864 + L2 LINE L2 2227 2418 -896 2374 84 0 0 chr21 31791493 31791803 -3115767 + AluY SINE Alu 1 310 -1 279 310 46 75 chr21 31791910 31792149 -3115421 - MLT1K LTR MaLR -165 423 192 1250 243 15 41 chr21 31794665 31795007 -3112563 - MLT2B1 LTR ERVL -184 336 4 374 363 133 33 chr21 31795011 31795372 -3112198 - L1MEd LINE L1 -5586 533 137 282 29 0 0 chr21 31795375 31795410 -3112160 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1541 181 3 14 chr21 31795413 31795701 -3111869 + AluJo SINE Alu 1 285 -27 198 217 174 14 chr21 31795811 31795880 -3111690 - L2 LINE L2 -660 2654 2575 1135 108 6 6 chr21 31795881 31796048 -3111522 + AluSg/x SINE Alu 128 294 -16 1185 246 58 36 chr21 31796055 31796384 -3111186 - L2 LINE L2 -745 2569 2234 748 154 16 0 chr21 31797178 31797301 -3110269 - AluSp/q SINE Alu 0 313 189 2290 94 3 0 chr21 31797772 31798080 -3109490 + AluSp SINE Alu 1 309 -4 2136 102 0 0 chr21 31798484 31798791 -3108779 + AluSq SINE Alu 1 307 0 636 309 82 5 chr21 31798847 31799067 -3108503 + MIR SINE MIR 5 241 -21 1344 199 111 72 chr21 31799309 31799741 -3107829 - LTR40b LTR ERVL -7 455 7 2951 216 58 49 chr21 31799744 31801410 -3106160 + L1ME1 LINE L1 4490 6161 -5 2905 165 45 13 chr21 31802037 31802570 -3105000 + MER44D DNA MER2_type 1 605 0 961 286 90 52 chr21 31803747 31804584 -3102986 + L1MEd LINE L1 624 1576 -1027 359 210 10 0 chr21 31805061 31805161 -3102409 + GA-rich Low_complexity Low_complexity 4 104 0 317 194 31 128 chr21 31805281 31805367 -3102203 + L1MEd LINE L1 2165 2223 -3906 1625 181 17 3 chr21 31805367 31805655 -3101915 + AluSx SINE Alu 1 292 -20 317 194 31 128 chr21 31805655 31805764 -3101806 + L1MEd LINE L1 2223 2341 -3788 1638 184 3 0 chr21 31805765 31806064 -3101506 + AluJo SINE Alu 1 300 -12 547 263 98 36 chr21 31806072 31806115 -3101455 + L1MEd LINE L1 2318 2357 -3772 1978 99 62 3 chr21 31806115 31806407 -3101163 - AluSg SINE Alu 0 310 2 547 263 98 36 chr21 31806407 31806587 -3100983 + L1MEd LINE L1 2357 2555 -3574 225 0 0 0 chr21 31806776 31806801 -3100769 + (CA)n Simple_repeat Simple_repeat 2 26 0 489 286 41 0 chr21 31806834 31806981 -3100589 + L1ME LINE L1 15 167 -5903 1368 170 9 76 chr21 31806982 31807299 -3100271 + AluJo SINE Alu 11 306 -6 686 214 100 18 chr21 31807762 31807907 -3099663 - MER96B DNA MER1_type? -4 413 243 1637 191 13 0 chr21 31807907 31808205 -3099365 - AluJo SINE Alu -10 302 1 686 214 100 18 chr21 31808205 31808279 -3099291 - MER96B DNA MER1_type? -174 243 176 2071 91 0 85 chr21 31808569 31808910 -3098660 - AluSx SINE Alu 0 312 1 630 227 0 30 chr21 31809267 31809399 -3098171 + MER58B DNA MER1_type 214 341 0 2213 112 0 0 chr21 31809900 31810205 -3097365 + AluSx SINE Alu 1 305 -7 377 258 73 22 chr21 31811338 31811516 -3096054 - L1ME3A LINE L1 -309 5861 5675 704 50 70 27 chr21 31814586 31814884 -3092686 + (CA)n Simple_repeat Simple_repeat 1 311 0 492 57 68 51 chr21 31814911 31815087 -3092483 + (CA)n Simple_repeat Simple_repeat 1 179 0 527 72 69 34 chr21 31815111 31815552 -3092018 + (CA)n Simple_repeat Simple_repeat 1 456 0 275 69 69 30 chr21 31815594 31815695 -3091875 + (CA)n Simple_repeat Simple_repeat 1 105 0 390 139 39 8 chr21 31815763 31815892 -3091678 + (CA)n Simple_repeat Simple_repeat 2 134 0 394 244 34 11 chr21 31815937 31816113 -3091457 + (CA)n Simple_repeat Simple_repeat 1 180 0 455 243 28 17 chr21 31816137 31816314 -3091256 + (CA)n Simple_repeat Simple_repeat 2 180 0 312 212 0 35 chr21 31817318 31817393 -3090177 + L1ME LINE L1 4055 4128 -2018 2070 130 0 10 chr21 31817393 31817693 -3089877 + AluJb SINE Alu 1 297 -15 4652 173 11 12 chr21 31817697 31819075 -3088495 + L1PA16 LINE L1 4351 5730 -436 1447 189 0 39 chr21 31819076 31819386 -3088184 + AluJo SINE Alu 9 307 0 2731 161 0 18 chr21 31819386 31819833 -3087737 + L1PA16 LINE L1 5719 6157 -9 227 270 81 27 chr21 31820481 31820629 -3086941 + L1ME LINE L1 5257 5412 -709 1683 144 3 57 chr21 31820696 31820994 -3086576 + AluJb SINE Alu 1 282 -30 384 269 126 33 chr21 31821071 31821342 -3086228 + L1ME LINE L1 5492 5787 -334 1178 174 0 46 chr21 31821426 31821644 -3085926 + AluJb SINE Alu 85 292 -20 283 362 38 24 chr21 31821737 31822036 -3085534 + L1MDa LINE L1 27 330 -6210 663 241 74 80 chr21 31822446 31822757 -3084813 + L1MDa LINE L1 917 1225 -5318 2670 43 0 0 chr21 31822758 31823061 -3084509 + AluY SINE Alu 1 303 -8 696 157 14 71 chr21 31823071 31823211 -3084359 + FLAM_A SINE Alu 1 132 -1 1131 252 41 85 chr21 31823284 31823920 -3083650 + MLT1E2 LTR MaLR 19 626 0 1976 161 3 0 chr21 31824471 31824769 -3082801 + AluJo SINE Alu 2 300 -12 1146 168 91 5 chr21 31825016 31825225 -3082345 + MER46A DNA MER2_type 9 235 -1 29 0 0 0 chr21 31826430 31826459 -3081111 + AT_rich Low_complexity Low_complexity 1 29 0 249 267 43 35 chr21 31826572 31826688 -3080882 + MLT1G3 LTR MaLR 75 191 -339 2034 152 3 0 chr21 31826750 31827047 -3080523 + AluSx SINE Alu 1 298 -14 2313 97 7 0 chr21 31827047 31827345 -3080225 + AluY SINE Alu 8 307 -4 359 254 113 34 chr21 31827403 31827580 -3079990 + MLT1G3 LTR MaLR 340 530 0 2207 123 0 0 chr21 31828060 31828361 -3079209 + AluSx SINE Alu 1 301 -11 1676 192 10 17 chr21 31828365 31828662 -3078908 + AluJo SINE Alu 1 295 -17 1362 167 8 30 chr21 31828780 31829043 -3078527 + L1ME1 LINE L1 4772 5028 -1118 2358 82 3 31 chr21 31829043 31829360 -3078210 + AluY SINE Alu 1 308 -3 493 200 67 0 chr21 31829374 31829464 -3078106 - AluJb SINE Alu -12 300 205 283 143 0 0 chr21 31829464 31829506 -3078064 - AluSc SINE Alu -129 170 129 943 181 0 0 chr21 31829502 31829651 -3077919 + Tigger1 DNA MER2_type 2270 2418 0 445 167 56 19 chr21 31829651 31829759 -3077811 + L1ME1 LINE L1 5225 5336 -810 7698 175 32 25 chr21 31829758 31830805 -3076765 + L1M3f LINE L1 6 1044 -5284 1516 208 14 3 chr21 31830805 31831089 -3076481 + AluJo SINE Alu 2 288 -24 426 69 0 0 chr21 31831089 31831147 -3076423 + (CAT)n Simple_repeat Simple_repeat 2 59 0 7698 175 32 25 chr21 31831147 31831633 -3075937 + L1M3f LINE L1 1044 1525 -4803 2099 152 0 0 chr21 31831633 31831942 -3075628 + AluSx SINE Alu 1 309 -3 7698 175 32 25 chr21 31831942 31833360 -3074210 + L1M3f LINE L1 1525 2974 -3354 769 206 8 0 chr21 31833360 31833491 -3074079 - FLAM_C SINE Alu 0 133 2 7698 175 32 25 chr21 31833491 31833897 -3073673 + L1M3f LINE L1 2974 3376 -2952 1088 176 29 0 chr21 31834434 31834638 -3072932 + L1ME1 LINE L1 5550 5759 -425 208 349 149 11 chr21 31834719 31834894 -3072676 - MIR3 SINE MIR -7 201 3 23 0 0 0 chr21 31835734 31835757 -3071813 + AT_rich Low_complexity Low_complexity 1 23 0 422 209 41 97 chr21 31835785 31835981 -3071589 + L1ME1 LINE L1 5962 6146 -20 2173 154 174 0 chr21 31836768 31837164 -3070406 + LTR24 LTR ERV1 3 467 0 2111 104 3 23 chr21 31837256 31837555 -3070015 - AluSx SINE Alu -14 298 6 271 298 24 13 chr21 31837911 31838053 -3069517 + MER5B DNA MER1_type 26 180 -9 11396 120 14 10 chr21 31838100 31839672 -3067898 + Tigger1 DNA MER2_type 1 1660 -758 2075 104 4 0 chr21 31839672 31839940 -3067630 + AluSp SINE Alu 1 269 -44 11396 120 14 10 chr21 31839940 31840703 -3066867 + Tigger1 DNA MER2_type 1660 2418 0 410 182 74 41 chr21 31841434 31841555 -3066015 + L1MB8 LINE L1 6045 6169 -9 343 221 12 0 chr21 31842272 31842435 -3065135 + (CA)n Simple_repeat Simple_repeat 1 165 0 459 189 0 27 chr21 31842457 31842642 -3064928 + (CA)n Simple_repeat Simple_repeat 1 180 0 524 198 5 0 chr21 31842665 31842886 -3064684 + (CA)n Simple_repeat Simple_repeat 1 222 0 425 147 15 0 chr21 31842886 31842954 -3064616 + Tigger2 DNA MER2_type 1 69 -2649 930 141 95 20 chr21 31842952 31843252 -3064318 + Tigger2 DNA MER2_type 2280 2703 -15 180 111 0 0 chr21 31843260 31843287 -3064283 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1942 166 133 18 chr21 31845543 31846000 -3061570 + L1MB8 LINE L1 4439 4948 -1198 2212 105 0 38 chr21 31846023 31846336 -3061234 + AluSx SINE Alu 1 301 -11 909 148 262 46 chr21 31846346 31846661 -3060909 + AluJo SINE Alu 1 366 0 1177 192 71 7 chr21 31846710 31847007 -3060563 + L1MB8 LINE L1 5055 5370 -776 2167 104 40 0 chr21 31847010 31847307 -3060263 + AluSx SINE Alu 3 311 -1 511 155 0 0 chr21 31847309 31847393 -3060177 + L1MB8 LINE L1 5652 5735 -443 874 154 0 0 chr21 31847395 31847538 -3060032 + FLAM_C SINE Alu 1 143 0 1224 201 107 10 chr21 31847539 31847847 -3059723 + L1MB8 LINE L1 5731 6068 -110 4889 214 50 46 chr21 31847835 31847875 -3059695 + L1MD2 LINE L1 3915 3953 -2406 243 0 0 0 chr21 31847875 31847902 -3059668 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1506 174 42 48 chr21 31847909 31848219 -3059351 + AluJo SINE Alu 1 308 -4 4889 214 50 46 chr21 31848219 31848566 -3059004 + L1MD2 LINE L1 3958 4302 -2057 1885 129 8 0 chr21 31848566 31848829 -3058741 + AluSx SINE Alu 1 265 -47 4889 214 50 46 chr21 31848829 31850408 -3057162 + L1MD2 LINE L1 4302 5899 -460 1560 189 7 14 chr21 31850408 31850699 -3056871 + AluJb SINE Alu 2 290 -22 4889 214 50 46 chr21 31850699 31851146 -3056424 + L1MD2 LINE L1 5899 6343 -16 2006 42 0 29 chr21 31851446 31851687 -3055883 - AluY SINE Alu -77 234 1 1840 104 116 8 chr21 31852054 31852322 -3055248 + AluSg1 SINE Alu 1 297 -12 910 138 0 22 chr21 31852402 31852540 -3055030 + AluJo SINE Alu 1 135 -177 27 0 0 0 chr21 31852572 31852599 -3054971 + AT_rich Low_complexity Low_complexity 1 27 0 896 173 23 6 chr21 31852599 31852772 -3054798 + AluJo SINE Alu 130 305 -7 1087 68 0 0 chr21 31853176 31853309 -3054261 - AluSx SINE Alu 0 310 178 632 133 0 0 chr21 31853309 31853399 -3054171 - AluSx SINE Alu -222 91 2 21 0 0 0 chr21 31853546 31853567 -3054003 + AT_rich Low_complexity Low_complexity 1 21 0 1885 119 62 108 chr21 31853684 31854066 -3053504 + MSTB1 LTR MaLR 16 377 -55 2381 73 10 0 chr21 31854066 31854366 -3053204 + AluY SINE Alu 2 304 -7 1885 119 62 108 chr21 31854366 31854420 -3053150 + MSTB1 LTR MaLR 377 432 0 1065 190 22 0 chr21 31855609 31855793 -3051777 - MER5A DNA MER1_type 0 189 2 789 125 62 23 chr21 31856422 31856550 -3051020 + FLAM_C SINE Alu 1 133 0 258 221 115 58 chr21 31857317 31857421 -3050149 + L2 LINE L2 3200 3309 -4 1913 118 45 14 chr21 31857632 31857919 -3049651 - AluSx SINE Alu -16 296 1 1747 120 0 0 chr21 31858100 31858341 -3049229 + AluSg/x SINE Alu 66 306 -6 394 267 58 41 chr21 31858575 31858747 -3048823 + LTR33 LTR ERVL 48 222 -299 397 183 75 58 chr21 31859315 31859435 -3048135 - L1MC4 LINE L1 0 8042 7921 983 158 7 0 chr21 31859454 31859606 -3047964 - AluSg/x SINE Alu -23 287 135 23 33 0 0 chr21 31859631 31859661 -3047909 + AT_rich Low_complexity Low_complexity 1 30 0 1209 134 0 0 chr21 31859661 31859840 -3047730 + AluSg/x SINE Alu 121 299 -11 21 36 0 0 chr21 31859969 31859997 -3047573 + AT_rich Low_complexity Low_complexity 1 28 0 2467 52 3 0 chr21 31860603 31860893 -3046677 - AluY SINE Alu -20 291 1 24 0 0 0 chr21 31860894 31860918 -3046652 + AT_rich Low_complexity Low_complexity 1 24 0 2338 112 0 0 chr21 31861091 31861396 -3046174 - AluSx SINE Alu -7 305 1 270 293 40 10 chr21 31861586 31861685 -3045885 - MIR SINE MIR -29 233 132 2211 93 7 0 chr21 31862519 31862809 -3044761 + AluSx SINE Alu 11 302 -10 225 262 0 0 chr21 31863226 31863242 -3044328 + GA-rich Low_complexity Low_complexity 4 19 -45 1961 102 7 32 chr21 31863242 31863525 -3044045 + AluSx SINE Alu 1 276 -36 225 262 0 0 chr21 31863525 31863569 -3044001 + GA-rich Low_complexity Low_complexity 18 64 0 581 51 0 41 chr21 31863570 31863668 -3043902 + (GGGAA)n Simple_repeat Simple_repeat 4 97 0 251 289 28 70 chr21 31864181 31864323 -3043247 - L2 LINE L2 -742 2572 2437 2318 192 50 12 chr21 31864427 31865043 -3042527 + LTR65 LTR ERV1 2 669 0 423 347 43 27 chr21 31865043 31865343 -3042227 - L2 LINE L2 -967 2347 2043 445 239 80 0 chr21 31865728 31865866 -3041704 - LTR33 LTR ERVL 0 521 373 400 233 87 38 chr21 31865894 31866081 -3041489 - LTR33 LTR ERVL -216 305 110 480 159 234 0 chr21 31867359 31867466 -3040104 + FLAM_C SINE Alu 2 133 -10 1773 134 54 0 chr21 31867477 31867754 -3039816 + AluSx SINE Alu 1 292 -20 1911 126 3 39 chr21 31869404 31869713 -3037857 + AluJo SINE Alu 1 298 -14 23 0 0 0 chr21 31869923 31869946 -3037624 + GC_rich Low_complexity Low_complexity 1 23 0 205 171 0 0 chr21 31870219 31870254 -3037316 + (CTGGGG)n Simple_repeat Simple_repeat 6 40 0 349 311 91 33 chr21 31870532 31870670 -3036900 - L2 LINE L2 -55 3258 3129 2494 68 7 0 chr21 31870670 31870980 -3036590 + AluSp SINE Alu 1 312 -1 349 311 91 33 chr21 31870980 31871231 -3036339 - L2 LINE L2 -184 3129 2795 252 340 100 58 chr21 31871561 31872091 -3035479 + L2 LINE L2 2174 2725 -589 463 200 19 48 chr21 31873146 31873251 -3034319 - L2 LINE L2 0 3313 3212 2022 121 30 7 chr21 31873647 31873945 -3033625 - AluSg SINE Alu -5 305 1 2283 108 0 13 chr21 31873945 31874250 -3033320 - AluSx SINE Alu -11 301 1 892 106 43 155 chr21 31874539 31874746 -3032824 + AluSp SINE Alu 130 313 0 2426 100 22 14 chr21 31875037 31875398 -3032172 - THE1B LTR MaLR 0 364 1 721 114 0 0 chr21 31875925 31876039 -3031531 - AluSg/x SINE Alu -2 307 194 1005 167 209 0 chr21 31876064 31876303 -3031267 + MSTB1 LTR MaLR 144 432 0 2132 111 7 7 chr21 31876826 31877123 -3030447 + AluSc SINE Alu 2 298 -11 787 223 36 46 chr21 31877185 31877490 -3030080 - L1MC5 LINE L1 -400 7561 7260 989 177 12 6 chr21 31877605 31877799 -3029771 - AluJo SINE Alu 0 312 118 287 104 0 83 chr21 31877818 31877866 -3029704 - Alu SINE Alu -17 285 242 433 145 0 13 chr21 31877866 31877942 -3029628 - AluJo SINE Alu -191 121 47 2373 98 0 3 chr21 31878314 31878620 -3028950 + AluSx SINE Alu 1 305 -7 2300 101 0 28 chr21 31878739 31879057 -3028513 - AluY SINE Alu -2 309 1 1144 120 150 0 chr21 31880974 31881174 -3026396 - MER30 DNA MER1_type 0 230 1 21 0 0 0 chr21 31881305 31881326 -3026244 + AT_rich Low_complexity Low_complexity 1 21 0 1898 145 10 26 chr21 31881751 31882062 -3025508 - AluJb SINE Alu -6 306 1 2016 145 13 3 chr21 31882072 31882375 -3025195 - AluSx SINE Alu -6 306 1 2509 91 0 0 chr21 31883740 31884049 -3023521 + AluSx SINE Alu 1 309 -3 2061 137 0 14 chr21 31884553 31884845 -3022725 - AluSx SINE Alu -24 288 1 237 65 0 0 chr21 31884970 31885001 -3022569 + (T)n Simple_repeat Simple_repeat 1 31 0 1032 172 101 0 chr21 31886125 31886232 -3021338 - MER30 DNA MER1_type 0 230 135 495 0 0 0 chr21 31886232 31886287 -3021283 + (TTTTA)n Simple_repeat Simple_repeat 2 56 0 1032 172 101 0 chr21 31886287 31886388 -3021182 - MER30 DNA MER1_type -95 135 1 4019 153 54 13 chr21 31888118 31888554 -3019016 - L1PB1 LINE L1 -217 5934 5517 2159 106 7 7 chr21 31888554 31888847 -3018723 - AluSq SINE Alu -20 293 1 4019 153 54 13 chr21 31888847 31889591 -3017979 - L1PB1 LINE L1 -634 5517 4705 1227 206 48 21 chr21 31889609 31889675 -3017895 - L1 LINE L1 -1347 4799 4736 2165 108 0 14 chr21 31889675 31889961 -3017609 - AluSx SINE Alu -30 282 1 1227 206 48 21 chr21 31889961 31890312 -3017258 - L1 LINE L1 -1410 4736 4360 1073 219 26 0 chr21 31890328 31890598 -3016972 - L1 LINE L1 -1742 4404 4128 2262 87 0 20 chr21 31890666 31890965 -3016605 + AluSg SINE Alu 1 293 -17 1588 177 64 4 chr21 31890967 31891233 -3016337 - AluJo SINE Alu -30 282 1 289 211 13 13 chr21 31891233 31891309 -3016261 + L1ME4a LINE L1 5990 6065 -56 2016 121 3 10 chr21 31891346 31891636 -3015934 + AluSq SINE Alu 1 288 -25 429 70 0 0 chr21 31891636 31891693 -3015877 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 1962 96 75 14 chr21 31891746 31892027 -3015543 - AluSp SINE Alu -15 298 1 1815 182 3 16 chr21 31892058 31892366 -3015204 + AluJb SINE Alu 1 304 -8 778 164 0 22 chr21 31892375 31892509 -3015061 + FLAM_C SINE Alu 3 133 0 2330 109 7 0 chr21 31893257 31893561 -3014009 - AluSx SINE Alu -6 306 1 21 0 0 0 chr21 31894076 31894097 -3013473 + AT_rich Low_complexity Low_complexity 1 21 0 2232 79 25 0 chr21 31894100 31894379 -3013191 + AluSx SINE Alu 15 300 -12 2523 61 0 0 chr21 31894464 31894759 -3012811 - AluY SINE Alu -16 295 1 39 0 0 0 chr21 31896118 31896157 -3011413 + AT_rich Low_complexity Low_complexity 1 39 0 1153 188 0 0 chr21 31896311 31896503 -3011067 + AluJo SINE Alu 85 276 -36 1655 139 54 4 chr21 31899204 31899463 -3008107 - AluSg SINE Alu -38 272 1 2284 99 0 34 chr21 31902012 31902335 -3005235 - AluSx SINE Alu 0 312 1 2331 100 0 13 chr21 31902707 31903006 -3004564 + AluSg SINE Alu 1 295 -15 330 309 0 0 chr21 31903060 31903144 -3004426 + (TG)n Simple_repeat Simple_repeat 2 85 0 1129 226 110 76 chr21 31907011 31907080 -3000490 + L1M4c LINE L1 659 724 -5660 1914 156 0 29 chr21 31907080 31907387 -3000183 + AluJb SINE Alu 1 298 -14 1129 226 110 76 chr21 31907387 31907623 -2999947 + L1M4c LINE L1 724 951 -5433 1810 59 130 7 chr21 31907623 31907893 -2999677 + AluSq SINE Alu 1 303 0 1129 226 110 76 chr21 31907893 31908527 -2999043 + L1M4c LINE L1 951 1603 -4781 788 188 117 47 chr21 31908536 31908566 -2999004 - L1MB5 LINE L1 -1 6173 6147 1922 135 20 14 chr21 31908566 31908862 -2998708 - AluSx SINE Alu -9 303 6 788 188 117 47 chr21 31908862 31908908 -2998662 - L1MB5 LINE L1 -27 6147 6106 3725 101 9 20 chr21 31908908 31909462 -2998108 + LTR14 LTR ERVK 1 548 0 788 188 117 47 chr21 31909462 31909640 -2997930 - L1MB5 LINE L1 -68 6106 5900 2076 129 3 13 chr21 31909757 31910059 -2997511 + AluSc SINE Alu 1 299 -10 2090 139 0 7 chr21 31911200 31911509 -2996061 + AluJb SINE Alu 1 307 -5 198 300 100 15 chr21 31911610 31911740 -2995830 - L2 LINE L2 0 3272 3132 2207 94 10 17 chr21 31911785 31912082 -2995488 - AluSc SINE Alu -14 295 1 353 258 22 0 chr21 31913960 31914049 -2993521 + MLT1A1 LTR MaLR 12 102 -263 890 262 66 35 chr21 31914073 31914331 -2993239 - MER7A DNA MER2_type -2692 346 79 2390 71 14 0 chr21 31914331 31914628 -2992942 + AluSx SINE Alu 1 301 -11 890 262 66 35 chr21 31914628 31914655 -2992915 - MER7A DNA MER2_type -2959 79 54 748 152 59 2 chr21 31914680 31914939 -2992631 - MLT1A1 LTR MaLR -33 332 1 2188 105 0 3 chr21 31915065 31915360 -2992210 + AluSx SINE Alu 1 294 -18 920 157 6 0 chr21 31915416 31915575 -2991995 + L1PA16 LINE L1 5804 5963 -203 1419 169 19 4 chr21 31915575 31915831 -2991739 + L1PA16 LINE L1 5902 6166 0 2155 128 0 0 chr21 31915834 31916146 -2991424 + AluSx SINE Alu 1 312 0 2390 97 0 0 chr21 31916366 31916677 -2990893 + AluSx SINE Alu 1 311 -1 2189 118 0 3 chr21 31916698 31917004 -2990566 + AluSx SINE Alu 1 305 -7 903 121 7 7 chr21 31917186 31917327 -2990243 - FLAM_C SINE Alu -2 141 1 2154 55 3 97 chr21 31917337 31917666 -2989904 - AluY SINE Alu -13 298 1 449 155 186 0 chr21 31917870 31917967 -2989603 + FLAM_C SINE Alu 1 115 -18 2429 165 26 9 chr21 31917967 31918385 -2989185 + MSTB LTR MaLR 1 426 0 953 191 6 0 chr21 31918414 31918576 -2988994 + FRAM SINE Alu 1 163 -3 382 317 19 0 chr21 31918860 31918964 -2988606 - L1MC3 LINE L1 -1714 6071 5966 1467 170 38 24 chr21 31918965 31919140 -2988430 - AluJo SINE Alu -17 295 113 212 0 36 0 chr21 31919140 31919168 -2988402 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1467 170 38 24 chr21 31919168 31919280 -2988290 - AluJo SINE Alu -199 113 4 3021 188 42 16 chr21 31919406 31919773 -2987797 - L1MC3 LINE L1 -373 5971 5576 2108 87 53 13 chr21 31919773 31920073 -2987497 - AluSx SINE Alu 0 312 1 3021 188 42 16 chr21 31920073 31920387 -2987183 - L1MC3 LINE L1 -768 5576 5272 1723 156 6 48 chr21 31920388 31920702 -2986868 + AluJb SINE Alu 2 302 -10 2136 79 0 0 chr21 31920702 31920967 -2986603 + AluSq SINE Alu 1 265 -48 460 122 0 52 chr21 31920979 31921094 -2986476 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 449 183 0 0 chr21 31921128 31921210 -2986360 - MER74C LTR ERVL 0 460 379 746 196 7 0 chr21 31921215 31921358 -2986212 - MER74C LTR ERVL 0 460 317 1711 194 64 5 chr21 31921361 31921798 -2985772 + L1MCa LINE L1 1096 1558 -4868 2234 57 14 17 chr21 31921839 31922136 -2985434 + AluY SINE Alu 15 310 -1 299 178 137 0 chr21 31922138 31922211 -2985359 + MER51A LTR ERV1 470 552 -82 2202 104 6 22 chr21 31922299 31922617 -2984953 + AluSp SINE Alu 1 313 0 3503 152 23 24 chr21 31922808 31923427 -2984143 + LTR35 LTR ERV1 1 618 0 1833 158 0 16 chr21 31923461 31923765 -2983805 - AluJo SINE Alu -2 310 12 2149 107 0 7 chr21 31923786 31924086 -2983484 - AluSg SINE Alu -11 299 2 1479 129 30 137 chr21 31924147 31924446 -2983124 + MER4E LTR ERV1 1 330 -436 2463 53 7 0 chr21 31924446 31924747 -2982823 - AluY SINE Alu -8 303 1 1479 129 30 137 chr21 31924747 31924791 -2982779 + MER4E LTR ERV1 330 377 -389 2149 53 53 3 chr21 31924791 31925076 -2982494 - AluY SINE Alu -7 304 6 1479 129 30 137 chr21 31925076 31925173 -2982397 + MER4E LTR ERV1 377 483 -283 2171 107 0 0 chr21 31925173 31925462 -2982108 - AluSg SINE Alu -20 290 2 2158 126 0 0 chr21 31925470 31925764 -2981806 - AluSx SINE Alu -18 294 1 1479 129 30 137 chr21 31925764 31925886 -2981684 + MER4E LTR ERV1 490 687 -79 2663 135 56 4 chr21 31925886 31926635 -2980935 + LTR1B LTR ERV1 1 826 0 480 132 0 0 chr21 31926635 31926718 -2980852 + MER4E LTR ERV1 697 779 0 300 94 0 94 chr21 31927854 31927918 -2979652 - MER49 LTR ERV1 -21 902 845 675 270 17 0 chr21 31927919 31928093 -2979477 - LTR1B LTR ERV1 0 826 650 2210 113 0 3 chr21 31928102 31928412 -2979158 - AluSg SINE Alu -1 309 1 33 0 0 0 chr21 31929214 31929247 -2978323 + GC_rich Low_complexity Low_complexity 1 33 0 210 71 0 0 chr21 31929271 31929299 -2978271 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 29 47 0 0 chr21 31929445 31929488 -2978082 + GC_rich Low_complexity Low_complexity 1 43 0 26 50 0 0 chr21 31929643 31929683 -2977887 + GC_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr21 31930086 31930107 -2977463 + GC_rich Low_complexity Low_complexity 1 21 0 494 220 17 8 chr21 31932887 31933005 -2974565 - MLT1E2 LTR MaLR 0 467 349 2390 69 0 7 chr21 31933222 31933527 -2974043 - AluY SINE Alu -8 303 1 2243 100 0 22 chr21 31933530 31933849 -2973721 - AluSx SINE Alu 0 312 1 1756 180 3 0 chr21 31934950 31935255 -2972315 + AluJo SINE Alu 3 308 -4 2279 81 0 3 chr21 31935430 31935726 -2971844 + AluY SINE Alu 1 295 -16 2143 119 3 3 chr21 31935916 31936228 -2971342 + AluSx SINE Alu 1 312 0 243 0 0 0 chr21 31936401 31936428 -2971142 + (TC)n Simple_repeat Simple_repeat 2 28 0 2314 67 6 13 chr21 31936649 31936962 -2970608 - AluY SINE Alu 0 311 1 1046 90 8 0 chr21 31936962 31937096 -2970474 - AluSq/x SINE Alu -178 135 1 435 236 21 13 chr21 31937154 31937399 -2970171 + (TG)n Simple_repeat Simple_repeat 1 247 0 1653 160 10 27 chr21 31940045 31940378 -2967192 + AluJo SINE Alu 1 312 0 261 0 0 0 chr21 31940491 31940520 -2967050 + (ATTG)n Simple_repeat Simple_repeat 2 30 0 2062 89 32 0 chr21 31940534 31940814 -2966756 - AluSx SINE Alu -23 289 1 522 237 82 91 chr21 31940821 31941062 -2966508 + MER63 DNA MER1_type 682 924 -137 1898 160 0 3 chr21 31941062 31941355 -2966215 + AluJo SINE Alu 3 294 -18 522 237 82 91 chr21 31941355 31941389 -2966181 + MER63 DNA MER1_type 924 957 -104 831 126 0 52 chr21 31941389 31941524 -2966046 - FLAM_C SINE Alu -5 128 1 522 237 82 91 chr21 31941524 31941589 -2965981 + MER63 DNA MER1_type 957 1020 -41 519 189 108 14 chr21 31941586 31941734 -2965836 - MLT1E2 LTR MaLR -326 300 139 2041 135 3 3 chr21 31943124 31943436 -2964134 - AluJb SINE Alu 0 312 1 186 150 0 0 chr21 31943626 31943666 -2963904 + (C)n Simple_repeat Simple_repeat 1 40 0 501 329 35 12 chr21 31944728 31944898 -2962672 + MIR SINE MIR 60 233 -29 283 186 17 0 chr21 31946824 31946883 -2960687 - L1M4 LINE L1 -434 5750 5691 940 162 12 17 chr21 31946998 31947010 -2960560 - AluJb SINE Alu -1 311 300 1913 164 0 3 chr21 31947010 31947322 -2960248 - AluJo SINE Alu -1 311 1 940 162 12 17 chr21 31947322 31947482 -2960088 - AluJb SINE Alu -12 300 140 431 243 18 0 chr21 31947488 31947599 -2959971 - MER68 LTR ERV1 -289 273 161 183 271 51 0 chr21 31948215 31948274 -2959296 + MIR3 SINE MIR 118 179 -29 1273 209 28 22 chr21 31948450 31948771 -2958799 + MLT1B LTR MaLR 1 323 -67 3064 97 6 23 chr21 31948836 31949311 -2958259 + LTR14 LTR ERVK 1 467 -81 1836 85 0 4 chr21 31949311 31949558 -2958012 - AluY SINE Alu -1 310 65 1136 87 0 7 chr21 31949561 31949711 -2957859 - AluSq/x SINE Alu -164 149 1 612 105 11 0 chr21 31949711 31949806 -2957764 + LTR14 LTR ERVK 453 548 0 2062 110 17 28 chr21 31949806 31950162 -2957408 - THE1C LTR MaLR -23 352 1 125 83 0 0 chr21 31951537 31951860 -2955710 + GC_rich Low_complexity Low_complexity 1 238 0 1870 157 0 7 chr21 31952565 31952870 -2954700 - AluJb SINE Alu -9 303 1 341 137 0 0 chr21 31952904 31952955 -2954615 - Alu SINE Alu -251 51 1 1502 164 56 25 chr21 31952983 31953269 -2954301 + AluJo SINE Alu 1 295 -17 1879 246 42 6 chr21 31954951 31955471 -2952099 + L1MB4 LINE L1 5429 5967 -213 833 223 22 6 chr21 31955487 31955526 -2952044 + L1MB3 LINE L1 5933 5970 -212 2298 99 0 0 chr21 31955526 31955829 -2951741 + AluSx SINE Alu 1 303 -9 833 223 22 6 chr21 31955829 31956042 -2951528 + L1MB3 LINE L1 5970 6181 -1 1795 193 0 0 chr21 31956103 31956403 -2951167 + AluJb SINE Alu 1 300 -12 866 210 31 58 chr21 31956675 31956799 -2950771 - MER58B DNA MER1_type -2095 325 210 1905 162 7 3 chr21 31956799 31957107 -2950463 - AluSx SINE Alu -3 309 1 866 210 31 58 chr21 31957107 31957239 -2950331 - MER58B DNA MER1_type -2210 210 76 1688 161 20 17 chr21 31957239 31957537 -2950033 + AluJb SINE Alu 1 299 -13 2223 84 24 0 chr21 31958599 31958897 -2948673 + AluSq SINE Alu 2 306 -7 213 65 22 43 chr21 31959073 31959119 -2948451 + (TCCC)n Simple_repeat Simple_repeat 1 45 0 2165 96 3 3 chr21 31959476 31959792 -2947778 - AluSx SINE Alu 0 317 2 584 243 0 6 chr21 31961088 31961269 -2946301 + (TG)n Simple_repeat Simple_repeat 1 180 0 330 225 0 0 chr21 31961301 31961381 -2946189 + (TG)n Simple_repeat Simple_repeat 1 80 0 1100 248 67 56 chr21 31961587 31961655 -2945915 - MLT1A1 LTR MaLR -2 363 297 2187 90 0 14 chr21 31961655 31961973 -2945597 + AluSx SINE Alu 1 314 0 1100 248 67 56 chr21 31961973 31962262 -2945308 - MLT1A1 LTR MaLR -68 297 1 240 111 0 0 chr21 31962490 31962526 -2945044 + (TG)n Simple_repeat Simple_repeat 1 36 0 342 268 0 0 chr21 31963551 31963674 -2943896 + (CA)n Simple_repeat Simple_repeat 1 123 0 201 74 0 0 chr21 31968364 31968391 -2939179 + (T)n Simple_repeat Simple_repeat 1 27 0 2337 103 0 0 chr21 31970553 31970864 -2936706 - AluSx SINE Alu 0 312 2 936 181 82 27 chr21 31973444 31973888 -2933682 - MLT1D LTR MaLR -6 499 2 921 146 66 94 chr21 31973911 31973991 -2933579 - LTR47A LTR ERVL 0 452 371 2272 100 0 3 chr21 31973991 31974301 -2933269 + AluSg SINE Alu 1 309 -1 921 146 66 94 chr21 31974301 31974628 -2932942 - LTR47A LTR ERVL -81 371 8 1697 152 19 29 chr21 31975395 31975710 -2931860 - AluJo SINE Alu 0 312 1 326 208 28 0 chr21 31975721 31975793 -2931777 - L1MB7 LINE L1 0 6184 6111 324 197 38 148 chr21 31975897 31975969 -2931601 + MLT1C LTR MaLR 17 95 -372 1666 138 0 127 chr21 31975969 31976118 -2931452 + AluJb SINE Alu 1 81 -231 2345 70 0 7 chr21 31976118 31976417 -2931153 + AluSp SINE Alu 2 298 -15 1666 138 0 127 chr21 31976417 31976622 -2930948 + AluJb SINE Alu 81 310 -2 324 197 38 148 chr21 31976622 31976732 -2930838 + MLT1C LTR MaLR 95 179 -288 2085 124 0 0 chr21 31976848 31977139 -2930431 + AluSx SINE Alu 1 291 -21 367 265 0 9 chr21 31977681 31977917 -2929653 + (CA)n Simple_repeat Simple_repeat 1 233 0 1758 154 0 10 chr21 31979915 31980208 -2927362 + AluJb SINE Alu 5 294 -18 2225 118 0 0 chr21 31980212 31980525 -2927045 + AluSq SINE Alu 1 313 0 1583 154 7 21 chr21 31981049 31981328 -2926242 - AluJb SINE Alu -1 311 37 180 372 74 30 chr21 31981674 31981972 -2925598 + L2 LINE L2 2898 3208 -64 2839 81 16 3 chr21 31981990 31982360 -2925210 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr21 31982539 31982561 -2925009 + AT_rich Low_complexity Low_complexity 1 22 0 1742 86 29 65 chr21 31982573 31982852 -2924718 - AluSx SINE Alu -30 282 14 2013 130 0 16 chr21 31983238 31983546 -2924024 - AluSx SINE Alu -9 303 1 254 308 103 0 chr21 31984164 31984271 -2923299 + MIR SINE MIR 4 121 -141 2093 108 14 0 chr21 31985330 31985627 -2921943 + AluSq SINE Alu 1 301 -12 260 300 0 33 chr21 31985749 31985839 -2921731 - MIR SINE MIR -70 192 106 909 204 57 23 chr21 31986054 31986393 -2921177 + MER31A LTR ERV1 1 373 -93 205 0 171 0 chr21 31986833 31986868 -2920702 + (CGGGG)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 31986980 31987002 -2920568 + GC_rich Low_complexity Low_complexity 1 22 0 2608 39 3 0 chr21 31987367 31987677 -2919893 - AluY SINE Alu 0 311 1 2266 88 0 0 chr21 31987677 31987974 -2919596 - AluSg SINE Alu -13 297 1 1476 179 84 7 chr21 31987974 31988259 -2919311 - AluJb SINE Alu -1 311 5 694 125 78 55 chr21 31988259 31988387 -2919183 - AluJo SINE Alu -175 137 7 502 202 87 29 chr21 31988992 31989200 -2918370 - MER89 LTR ERV1 0 559 340 1812 190 78 39 chr21 31989200 31989664 -2917906 - LTR26B LTR ERV1 0 531 50 257 128 21 0 chr21 31989664 31989711 -2917859 + CT-rich Low_complexity Low_complexity 4 51 0 1996 110 36 23 chr21 31989718 31990026 -2917544 - AluSx SINE Alu 0 312 1 45 0 0 0 chr21 31990054 31990099 -2917471 + AT_rich Low_complexity Low_complexity 1 45 0 240 212 0 0 chr21 31990164 31990230 -2917340 - MER89 LTR ERV1 -492 67 2 495 297 83 31 chr21 31990294 31990523 -2917047 + MIR SINE MIR 22 262 0 1574 153 4 8 chr21 31990583 31990845 -2916725 - AluJb SINE Alu -3 309 49 3656 181 45 25 chr21 31990845 31991487 -2916083 + LTR8A LTR ERV1 1 660 -67 2208 102 0 3 chr21 31991487 31991782 -2915788 - AluSx SINE Alu -17 295 2 3656 181 45 25 chr21 31991782 31991848 -2915722 + LTR8A LTR ERV1 660 723 -4 367 125 0 0 chr21 31991848 31991904 -2915666 - AluJb SINE Alu -246 56 1 1558 183 71 80 chr21 31992000 31992049 -2915521 + LTR56 LTR ERV1 1 49 -396 2170 85 3 10 chr21 31992049 31992343 -2915227 - AluY SINE Alu -19 292 1 1558 183 71 80 chr21 31992343 31992630 -2914940 + LTR56 LTR ERV1 49 337 -108 1985 123 0 7 chr21 31992630 31992946 -2914624 + AluSq SINE Alu 1 314 0 1558 183 71 80 chr21 31992946 31993055 -2914515 + LTR56 LTR ERV1 337 445 0 4471 68 7 0 chr21 31994302 31994850 -2912720 - MER41A LTR ERV1 0 554 3 743 184 0 0 chr21 31994954 31995068 -2912502 + AluJ SINE Alu 2 115 -187 2908 62 2 5 chr21 31995068 31995468 -2912102 + MLT2A1 LTR ERVL 2 400 -44 356 54 27 27 chr21 31995475 31995549 -2912021 + (TA)n Simple_repeat Simple_repeat 1 74 0 324 78 0 0 chr21 31995557 31995608 -2911962 + MLT2A1 LTR ERVL 399 449 -4 1090 171 6 0 chr21 31995609 31995784 -2911786 + AluJ SINE Alu 107 282 -30 212 0 36 0 chr21 31995789 31995817 -2911753 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2046 111 14 0 chr21 31996011 31996299 -2911271 + AluSx SINE Alu 1 292 -20 2147 74 35 0 chr21 31996366 31996650 -2910920 - AluY SINE Alu -17 294 1 496 248 14 14 chr21 31997857 31997998 -2909572 + MLT1C LTR MaLR 42 182 -285 636 97 10 6 chr21 31998002 31998256 -2909314 + AluSx SINE Alu 1 303 0 2105 107 0 19 chr21 31998287 31998595 -2908975 - AluSx SINE Alu -10 302 1 2501 31 0 0 chr21 31998689 31998977 -2908593 - AluY SINE Alu -23 288 1 2475 69 0 0 chr21 31999185 31999488 -2908082 - AluSg SINE Alu -6 304 2 895 126 48 18 chr21 31999502 31999669 -2907901 + AluJb SINE Alu 121 292 -20 486 213 138 63 chr21 32000600 32000671 -2906899 + MER5A DNA MER1_type 3 67 -122 634 191 46 30 chr21 32000671 32000802 -2906768 + FLAM_A SINE Alu 1 133 0 486 213 138 63 chr21 32000802 32000904 -2906666 + MER5A DNA MER1_type 67 189 0 1465 150 23 42 chr21 32000973 32001279 -2906291 - AluJb SINE Alu -12 300 1 2240 97 0 3 chr21 32001892 32002192 -2905378 - AluSq SINE Alu -14 299 1 228 67 0 0 chr21 32002960 32002990 -2904580 + (TGAG)n Simple_repeat Simple_repeat 1 30 0 447 287 66 0 chr21 32003483 32003605 -2903965 + MER5B DNA MER1_type 2 131 -47 1382 167 16 19 chr21 32005944 32006202 -2901368 - AluJb SINE Alu -17 295 39 1259 216 30 4 chr21 32006248 32006516 -2901054 + AluSc SINE Alu 1 275 -34 363 306 45 0 chr21 32008529 32008640 -2898930 + L2 LINE L2 2579 2694 -620 193 288 91 0 chr21 32011457 32011523 -2896047 - MER5A DNA MER1_type -1 188 117 1401 101 18 0 chr21 32011860 32012077 -2895493 - AluJo SINE Alu -9 303 83 801 266 55 0 chr21 32012204 32012422 -2895148 + MER46A DNA MER2_type 1 230 -6 2287 92 7 0 chr21 32015384 32015687 -2891883 + AluSp SINE Alu 1 305 -8 329 132 0 0 chr21 32016245 32016298 -2891272 + FRAM/FAM SINE Alu 24 76 -99 600 279 62 23 chr21 32016563 32016821 -2890749 - L1MB8 LINE L1 -353 5825 5558 674 179 41 0 chr21 32017208 32017331 -2890239 + FLAM_A SINE Alu 1 128 -5 434 276 61 43 chr21 32017405 32017568 -2890002 - L1MD3 LINE L1 -1170 6825 6660 2206 96 3 0 chr21 32017837 32018130 -2889440 - AluSg SINE Alu -16 294 1 427 208 92 8 chr21 32018171 32018291 -2889279 - MLT1A2 LTR MaLR -244 130 1 282 225 74 14 chr21 32018331 32018554 -2889016 - MLT2B1 LTR ERVL -57 357 72 239 250 17 0 chr21 32022353 32022413 -2885157 + MIR SINE MIR 90 150 -58 243 264 44 0 chr21 32023308 32023399 -2884171 - MLT1E1 LTR MaLR -254 400 306 2343 77 7 0 chr21 32024322 32024619 -2882951 - AluSg SINE Alu -11 299 1 233 332 53 21 chr21 32025447 32025634 -2881936 - L2 LINE L2 -273 3040 2848 210 242 23 53 chr21 32025674 32025806 -2881764 + G-rich Low_complexity Low_complexity 4 131 0 942 246 53 0 chr21 32025836 32026117 -2881453 - MLT1B LTR MaLR 0 390 95 528 219 8 16 chr21 32026205 32026328 -2881242 - MLT1B LTR MaLR -268 122 1 1681 155 0 43 chr21 32028583 32028887 -2878683 - AluJb SINE Alu -2 310 20 312 250 0 0 chr21 32028887 32028999 -2878571 + (CA)n Simple_repeat Simple_repeat 1 112 0 473 256 30 30 chr21 32029211 32029414 -2878156 - HAL1 LINE L1 -1322 1185 983 214 268 0 28 chr21 32029860 32029931 -2877639 + G-rich Low_complexity Low_complexity 6 74 0 356 276 38 0 chr21 32030439 32030544 -2877026 + MIR3 SINE MIR 78 186 -22 707 215 44 19 chr21 32030835 32031040 -2876530 + MLT1D LTR MaLR 60 269 -198 2182 94 3 0 chr21 32031228 32031527 -2876043 - AluSc SINE Alu -9 300 1 486 297 20 20 chr21 32031548 32031696 -2875874 + L1M4 LINE L1 3626 3773 -2373 23 33 0 0 chr21 32031890 32031920 -2875650 + AT_rich Low_complexity Low_complexity 1 30 0 514 14 0 41 chr21 32031930 32032003 -2875567 + (TCTCCC)n Simple_repeat Simple_repeat 5 74 0 6930 68 11 4 chr21 32032003 32033439 -2874131 + SVA Other Other 57 1386 0 1012 207 0 0 chr21 32033448 32033646 -2873924 + MLT1D LTR MaLR 262 459 -46 2474 60 0 0 chr21 32033673 32033973 -2873597 + AluY SINE Alu 2 301 -10 736 128 9 0 chr21 32033974 32034083 -2873487 - FLAM_A SINE Alu -32 110 1 1066 125 6 0 chr21 32034240 32034400 -2873170 - AluJb SINE Alu -5 307 147 420 297 64 0 chr21 32035966 32036168 -2871402 - MER115 DNA AcHobo -62 631 417 388 260 61 11 chr21 32036230 32036411 -2871159 - MER115 DNA AcHobo -415 278 89 869 109 0 43 chr21 32037634 32037772 -2869798 + AluSg/x SINE Alu 164 295 -14 1752 143 0 64 chr21 32037785 32038114 -2869456 + AluJo SINE Alu 1 308 -4 1554 120 0 0 chr21 32038123 32038332 -2869238 + AluSx SINE Alu 1 209 -103 418 160 13 13 chr21 32038334 32038409 -2869161 + AluJo SINE Alu 77 151 -161 1936 131 34 0 chr21 32038410 32038701 -2868869 + AluSx SINE Alu 1 301 -11 1026 242 55 10 chr21 32038707 32039193 -2868377 + L1ME LINE L1 5109 5661 -503 802 124 146 0 chr21 32039193 32039330 -2868240 + AluSg/x SINE Alu 138 294 -16 391 222 0 0 chr21 32039423 32039504 -2868066 - Charlie1a DNA MER1_type -1214 241 161 378 211 116 0 chr21 32039512 32039607 -2867963 - L1MB3 LINE L1 -8 6175 6070 332 299 79 16 chr21 32039659 32039786 -2867784 - L1MB3 LINE L1 -185 5993 5859 387 262 0 56 chr21 32039801 32039927 -2867643 - Charlie1a DNA MER1_type -1281 174 56 2263 71 0 0 chr21 32040526 32040834 -2866736 + AluY SINE Alu 2 309 0 530 172 40 33 chr21 32041188 32041339 -2866231 + Charlie4 DNA MER1_type 1804 1955 -6 328 161 0 0 chr21 32041340 32041396 -2866174 + U6 snRNA snRNA 1 56 -51 2012 132 7 0 chr21 32041429 32041725 -2865845 + AluJo SINE Alu 6 303 -9 252 341 15 8 chr21 32041971 32042103 -2865467 - L1MC4 LINE L1 -812 7230 7098 378 290 65 33 chr21 32042204 32042257 -2865313 - L1MC4 LINE L1 -938 7104 7054 2131 108 0 0 chr21 32042257 32042543 -2865027 - AluSx SINE Alu -14 298 13 378 290 65 33 chr21 32042543 32042754 -2864816 - L1MC4 LINE L1 -988 7054 6741 204 230 97 71 chr21 32043023 32043136 -2864434 + L2 LINE L2 2470 2585 -729 2200 108 0 0 chr21 32043669 32043966 -2863604 - AluSc SINE Alu -12 297 1 576 243 29 44 chr21 32043985 32044191 -2863379 + L1M3 LINE L1 5569 5771 -409 285 128 0 115 chr21 32044271 32044372 -2863198 + AluJ/FRAM SINE Alu 231 302 0 234 245 0 0 chr21 32046560 32046609 -2860961 + GA-rich Low_complexity Low_complexity 3 51 0 566 217 16 8 chr21 32046671 32046800 -2860770 + L1M4 LINE L1 14 143 -6399 1257 82 29 6 chr21 32046800 32047002 -2860568 + AluY SINE Alu 109 314 0 1314 217 75 55 chr21 32047003 32047454 -2860116 + L1M4 LINE L1 163 622 -5920 794 219 26 0 chr21 32047452 32047680 -2859890 + L1M4 LINE L1 3307 3540 -3104 3584 152 10 45 chr21 32047679 32047944 -2859626 + L1MC1 LINE L1 5430 5703 -630 1953 162 0 3 chr21 32047944 32048253 -2859317 + AluJo SINE Alu 1 308 -4 3584 152 10 45 chr21 32048253 32048501 -2859069 + L1MC1 LINE L1 5703 5958 -375 1899 249 76 23 chr21 32048501 32048597 -2858973 - MER34 LTR ERV1 0 542 452 1919 102 69 0 chr21 32048597 32048866 -2858704 + AluSx SINE Alu 1 289 -19 219 36 0 0 chr21 32048866 32048894 -2858676 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1899 249 76 23 chr21 32048898 32049316 -2858254 - MER34 LTR ERV1 -90 452 1 3584 152 10 45 chr21 32049316 32049514 -2858056 + L1MC1 LINE L1 5958 6117 -216 1895 122 18 4 chr21 32049516 32049828 -2857742 + AluSx SINE Alu 1 316 0 1011 245 82 19 chr21 32049828 32049874 -2857696 - L1ME LINE L1 -456 5708 5666 2513 49 13 0 chr21 32049874 32050180 -2857390 - AluY SINE Alu -1 310 1 1011 245 82 19 chr21 32050180 32050617 -2856953 - L1ME LINE L1 -498 5666 5195 1786 172 3 10 chr21 32050620 32050934 -2856636 - AluJo SINE Alu 0 312 1 1869 103 96 0 chr21 32050941 32051213 -2856357 - AluSx SINE Alu -14 298 1 1865 143 0 0 chr21 32051279 32051552 -2856018 + AluSx SINE Alu 1 273 -39 3313 218 49 60 chr21 32051553 32051833 -2855737 - L1ME LINE L1 -985 5161 4879 2216 74 0 0 chr21 32051833 32052149 -2855421 - AluY SINE Alu 0 316 1 3313 218 49 60 chr21 32052149 32052545 -2855025 - L1ME LINE L1 -1267 4879 4480 2219 114 0 0 chr21 32052545 32052843 -2854727 + AluSx SINE Alu 1 298 -14 3313 218 49 60 chr21 32052843 32053075 -2854495 - L1ME LINE L1 -1666 4480 4247 306 0 0 0 chr21 32053075 32053109 -2854461 + (TG)n Simple_repeat Simple_repeat 1 34 0 3313 218 49 60 chr21 32053109 32053451 -2854119 - L1ME LINE L1 -1899 4247 3920 2277 81 0 3 chr21 32053451 32053762 -2853808 - AluSp SINE Alu 0 312 3 3313 218 49 60 chr21 32053762 32053783 -2853787 - L1ME LINE L1 -2226 3920 3900 1767 133 0 8 chr21 32053831 32054087 -2853483 - AluSx SINE Alu -58 254 1 800 157 15 8 chr21 32054087 32054221 -2853349 - AluJo SINE Alu -177 135 1 2376 235 11 43 chr21 32054224 32054782 -2852788 - L1ME LINE L1 -2301 3845 3322 2325 88 0 0 chr21 32054782 32055076 -2852494 + AluSx SINE Alu 1 294 -18 2376 235 11 43 chr21 32055076 32055359 -2852211 - L1ME LINE L1 -2824 3322 3031 683 174 38 76 chr21 32055364 32055548 -2852022 - L1MC1 LINE L1 -5 6328 6152 1458 106 0 0 chr21 32055549 32055748 -2851822 - AluSg/x SINE Alu -10 300 102 819 226 69 23 chr21 32055888 32056149 -2851421 + MLT1F1 LTR MaLR 295 567 0 1881 157 7 10 chr21 32056514 32056813 -2850757 + AluJb SINE Alu 1 298 -14 1081 187 23 19 chr21 32056865 32057079 -2850491 - AluJb SINE Alu -89 223 9 2006 113 0 0 chr21 32057321 32057632 -2849938 + AluSx SINE Alu 2 312 0 2081 101 11 0 chr21 32058644 32058962 -2848608 - AluSx SINE Alu 0 321 1 491 244 87 98 chr21 32059149 32059506 -2848064 - MLT1H LTR MaLR 0 549 197 1141 101 0 0 chr21 32059538 32059696 -2847874 - AluSq SINE Alu -3 310 153 2603 133 4 58 chr21 32059696 32060177 -2847393 - MER41B LTR ERV1 -180 455 1 566 120 0 93 chr21 32060605 32060713 -2846857 + MER4A LTR ERV1 1 98 -566 470 92 22 144 chr21 32060713 32060805 -2846765 + MER4A LTR ERV1 261 363 -301 2316 98 7 0 chr21 32060805 32061101 -2846469 + AluSx SINE Alu 6 303 -9 470 92 22 144 chr21 32061101 32061190 -2846380 + MER4A LTR ERV1 363 479 -185 1684 179 39 19 chr21 32061194 32061558 -2846012 - THE1C LTR MaLR 0 375 5 259 93 0 47 chr21 32061558 32061601 -2845969 - THE1C LTR MaLR -334 41 1 1094 136 22 16 chr21 32061601 32061785 -2845785 + MER4A LTR ERV1 480 664 0 2404 66 14 0 chr21 32063238 32063526 -2844044 - AluSp SINE Alu -21 292 1 1851 188 0 3 chr21 32063528 32063837 -2843733 - AluJb SINE Alu -4 308 1 1390 219 35 28 chr21 32064450 32064837 -2842733 + MLT1B LTR MaLR 1 467 0 2018 137 20 0 chr21 32065799 32066092 -2841478 - AluSx SINE Alu -13 299 1 288 0 0 0 chr21 32066782 32066814 -2840756 + (TA)n Simple_repeat Simple_repeat 2 33 0 2595 52 16 7 chr21 32066815 32067123 -2840447 - AluY SINE Alu 0 311 1 2354 114 0 0 chr21 32067365 32067697 -2839873 + AluSq SINE Alu 2 333 0 2319 99 3 0 chr21 32067707 32068001 -2839569 + AluSx SINE Alu 5 299 -13 1961 136 7 18 chr21 32068004 32068326 -2839244 + AluSq SINE Alu 2 320 0 1659 155 4 4 chr21 32068330 32068582 -2838988 + AluJb SINE Alu 39 290 -22 2190 95 10 3 chr21 32068603 32068898 -2838672 - AluSx SINE Alu -15 297 1 3782 79 22 7 chr21 32070019 32070565 -2837005 - MER41A LTR ERV1 0 554 1 247 261 31 0 chr21 32070995 32071060 -2836510 - MIR SINE MIR -57 151 85 2163 114 3 13 chr21 32071449 32071757 -2835813 + AluSx SINE Alu 1 305 -7 431 176 0 55 chr21 32071869 32071960 -2835610 - AluY SINE Alu -8 303 218 218 331 79 29 chr21 32072042 32072181 -2835389 + MIR SINE MIR 60 205 -57 650 141 289 6 chr21 32072367 32072523 -2835047 - AluJb SINE Alu -31 281 82 1188 201 108 4 chr21 32072661 32072769 -2834801 + AluJo SINE Alu 11 106 -206 185 0 40 0 chr21 32072769 32072794 -2834776 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1188 201 108 4 chr21 32072794 32072934 -2834636 + AluJo SINE Alu 106 285 -27 35 0 0 0 chr21 32072937 32072972 -2834598 + AT_rich Low_complexity Low_complexity 1 35 0 2094 133 26 13 chr21 32073114 32073422 -2834148 - AluSx SINE Alu 0 312 1 2244 94 3 29 chr21 32073422 32073730 -2833840 - AluSg1 SINE Alu -9 300 1 21 0 0 0 chr21 32073791 32073812 -2833758 + AT_rich Low_complexity Low_complexity 1 21 0 1981 143 13 25 chr21 32074214 32074529 -2833041 + AluJo SINE Alu 1 311 -1 297 224 22 71 chr21 32075131 32075314 -2832256 + (CCCCG)n Simple_repeat Simple_repeat 5 178 0 285 243 11 74 chr21 32075277 32075466 -2832104 + C-rich Low_complexity Low_complexity 2 178 0 24 0 0 0 chr21 32075488 32075512 -2832058 + GC_rich Low_complexity Low_complexity 1 24 0 271 232 12 77 chr21 32075534 32075702 -2831868 + G-rich Low_complexity Low_complexity 2 158 0 33 17 0 51 chr21 32075851 32075910 -2831660 + GC_rich Low_complexity Low_complexity 1 56 0 25 31 0 0 chr21 32076063 32076095 -2831475 + GC_rich Low_complexity Low_complexity 1 32 0 697 168 8 0 chr21 32080273 32080392 -2827178 - FLAM_A SINE Alu -13 120 1 1840 125 10 38 chr21 32080822 32081133 -2826437 + AluSx SINE Alu 3 305 0 535 302 94 8 chr21 32081930 32082166 -2825404 - L1MC/D LINE L1 -764 5365 5238 879 304 75 51 chr21 32082427 32082567 -2825003 - L1MC/D LINE L1 -1633 4496 4361 2493 90 3 0 chr21 32082567 32082868 -2824702 - AluSx SINE Alu -10 302 1 879 304 75 51 chr21 32082868 32083178 -2824392 - L1MC/D LINE L1 -1768 4361 4035 1939 62 0 0 chr21 32083841 32084066 -2823504 - AluSx SINE Alu -87 225 1 1074 281 101 59 chr21 32084067 32084425 -2823145 - L1MC/D LINE L1 -2760 3369 2973 2155 107 35 0 chr21 32084425 32084714 -2822856 - AluSx SINE Alu -13 299 1 1074 281 101 59 chr21 32084714 32084978 -2822592 - L1MC/D LINE L1 -3156 2973 2721 507 292 68 4 chr21 32084985 32085235 -2822335 - L1MC/D LINE L1 -4711 1418 1153 1042 197 92 72 chr21 32085235 32085370 -2822200 + MER2 DNA MER2_type 1 132 -212 1948 101 4 4 chr21 32085370 32085627 -2821943 - AluSg SINE Alu -13 297 41 1042 197 92 72 chr21 32085627 32085826 -2821744 + MER2 DNA MER2_type 132 342 -2 559 255 25 46 chr21 32085853 32086006 -2821564 - L1MC/D LINE L1 -5011 1108 958 2271 93 3 3 chr21 32086006 32086296 -2821274 - AluSx SINE Alu -22 290 1 559 255 25 46 chr21 32086296 32086338 -2821232 - L1MC/D LINE L1 -5161 958 917 703 131 62 39 chr21 32086339 32086469 -2821101 - FLAM_C SINE Alu 0 133 1 483 264 63 113 chr21 32086469 32086912 -2820658 - L1MC/D LINE L1 -5152 967 547 1969 142 4 4 chr21 32087216 32087547 -2820023 - AluSx SINE Alu 0 331 1 2155 111 20 3 chr21 32087835 32088132 -2819438 - AluSp SINE Alu -11 302 1 1932 156 3 28 chr21 32089108 32089428 -2818142 - AluSx SINE Alu 0 312 1 2194 131 7 0 chr21 32089464 32089762 -2817808 + AluSx SINE Alu 9 308 -4 928 183 31 43 chr21 32091878 32092052 -2815518 + MER33 DNA MER1_type 49 221 -2364 2340 99 0 3 chr21 32092052 32092345 -2815225 - AluSx SINE Alu -20 292 1 928 183 31 43 chr21 32092345 32092427 -2815143 + MER33 DNA MER1_type 221 302 -22 2231 135 3 0 chr21 32093970 32094282 -2813288 - AluSq SINE Alu 0 313 1 1051 90 0 15 chr21 32094284 32094418 -2813152 - AluSp SINE Alu -181 132 1 257 150 12 38 chr21 32094605 32094685 -2812885 + CT-rich Low_complexity Low_complexity 2 79 0 2154 139 16 0 chr21 32095767 32096070 -2811500 - AluSx SINE Alu -2 310 3 248 88 0 0 chr21 32096589 32096623 -2810947 - L1MA2 LINE L1 -201 6103 6070 2144 128 7 0 chr21 32096651 32096940 -2810630 - AluSx SINE Alu -21 291 1 3231 109 64 0 chr21 32096940 32097455 -2810115 - L1MA3 LINE L1 -225 6080 5533 338 316 57 24 chr21 32097687 32097934 -2809636 + L1MC5 LINE L1 7509 7763 -198 1991 132 7 0 chr21 32098041 32098341 -2809229 - AluSx SINE Alu 0 302 1 1851 192 3 0 chr21 32098421 32098728 -2808842 - AluJb SINE Alu -4 308 1 1070 77 0 0 chr21 32098804 32098947 -2808623 + L1PA11 LINE L1 6032 6174 0 2214 126 0 0 chr21 32099097 32099391 -2808179 + AluSg SINE Alu 1 294 -16 292 337 66 42 chr21 32099460 32099748 -2807822 - L1M4c LINE L1 -1901 4481 4187 262 212 81 50 chr21 32099816 32099915 -2807655 - L1M4c LINE L1 -2299 4083 3982 723 192 0 0 chr21 32099915 32100040 -2807530 - Tigger1 DNA MER2_type 0 2418 2294 260 167 0 0 chr21 32100038 32100080 -2807490 + 5S rRNA rRNA 1 42 -79 1433 138 12 12 chr21 32100077 32100324 -2807246 - Tigger1 DNA MER2_type -105 2313 2067 12599 130 8 24 chr21 32100424 32100435 -2807135 - Tigger1 DNA MER2_type -336 2082 2072 1976 146 54 47 chr21 32100435 32100809 -2806761 + MSTA LTR MaLR 1 371 -57 1985 154 0 0 chr21 32100809 32101101 -2806469 - AluJb SINE Alu -20 292 1 2132 133 0 0 chr21 32101106 32101426 -2806144 - AluSx SINE Alu 0 320 1 1976 146 54 47 chr21 32101426 32101468 -2806102 + MSTA LTR MaLR 374 427 -1 12599 130 8 24 chr21 32101468 32101740 -2805830 - Tigger1 DNA MER2_type -346 2072 1797 2473 84 0 0 chr21 32101740 32102037 -2805533 + AluY SINE Alu 1 297 -14 12599 130 8 24 chr21 32102037 32102413 -2805157 - Tigger1 DNA MER2_type -621 1797 1416 2376 113 0 0 chr21 32102413 32102722 -2804848 + AluSq SINE Alu 1 309 -4 12599 130 8 24 chr21 32102722 32103205 -2804365 - Tigger1 DNA MER2_type -1002 1416 927 1467 221 0 20 chr21 32103205 32103499 -2804071 + AluJb SINE Alu 11 298 -14 12599 130 8 24 chr21 32103499 32104455 -2803115 - Tigger1 DNA MER2_type -1491 927 15 305 359 39 50 chr21 32104608 32104789 -2802781 - L1M4c LINE L1 -2527 3855 3677 845 229 11 47 chr21 32104789 32105122 -2802448 - L1MB7 LINE L1 0 6261 6003 2169 123 0 13 chr21 32105481 32105797 -2801773 - AluSx SINE Alu 0 312 1 408 306 31 56 chr21 32105914 32105991 -2801579 - L1M4c LINE L1 -3195 3187 3110 2075 101 28 14 chr21 32105991 32106141 -2801429 - AluSx SINE Alu -21 291 134 2253 124 0 13 chr21 32106141 32106456 -2801114 - AluSx SINE Alu -1 311 1 2075 101 28 14 chr21 32106456 32106592 -2800978 - AluSx SINE Alu -178 134 1 408 306 31 56 chr21 32106592 32106873 -2800697 - L1M4c LINE L1 -3272 3110 2838 811 281 26 6 chr21 32106991 32107340 -2800230 - L1M4c LINE L1 -3615 2767 2412 5661 84 57 18 chr21 32107340 32108544 -2799026 - SVA Other Other -1013 1386 19 2243 102 0 0 chr21 32108917 32109215 -2798355 - AluSx SINE Alu -14 298 14 814 154 23 0 chr21 32109274 32109404 -2798166 - AluJb SINE Alu -179 133 1 295 317 57 4 chr21 32109472 32109674 -2797896 - L1M4c LINE L1 -4640 1923 1562 447 259 53 0 chr21 32109763 32109894 -2797676 + L1ME3A LINE L1 5149 5286 -860 789 263 117 55 chr21 32111181 32111408 -2796162 + L1MEc LINE L1 646 857 -5358 1579 169 12 72 chr21 32111408 32111740 -2795830 + AluJo SINE Alu 1 312 0 789 263 117 55 chr21 32111740 32111889 -2795681 + L1MEc LINE L1 857 995 -5220 1712 154 42 7 chr21 32111889 32112175 -2795395 + AluJo SINE Alu 1 296 -16 789 263 117 55 chr21 32112175 32112653 -2794917 + L1MEc LINE L1 995 1394 -4821 393 224 19 9 chr21 32112654 32112761 -2794809 + L1MB3 LINE L1 4925 5032 -1114 2049 176 46 17 chr21 32112761 32112793 -2794777 + L1MB3 LINE L1 5758 5788 -395 1307 181 113 62 chr21 32112793 32113105 -2794465 - MLT1A2 LTR MaLR 0 374 40 1811 168 0 7 chr21 32113105 32113397 -2794173 + AluJb SINE Alu 1 290 -22 1307 181 113 62 chr21 32113397 32113438 -2794132 - MLT1A2 LTR MaLR -334 40 3 2049 176 46 17 chr21 32113438 32113819 -2793751 + L1MB3 LINE L1 5788 6183 0 399 56 0 0 chr21 32114444 32114498 -2793072 + (TG)n Simple_repeat Simple_repeat 2 55 0 2145 75 7 4 chr21 32115544 32115876 -2791694 - AluSc SINE Alu 0 333 1 533 314 44 41 chr21 32116775 32117094 -2790476 + L1ME3A LINE L1 5333 5652 -510 399 245 41 48 chr21 32117376 32117409 -2790161 + L1ME3A LINE L1 6020 6052 -118 1615 130 18 14 chr21 32117409 32117693 -2789877 - AluJo SINE Alu -1 311 27 399 245 41 48 chr21 32117693 32117806 -2789764 + L1ME3A LINE L1 6052 6165 -5 2471 57 0 0 chr21 32117826 32118127 -2789443 + AluY SINE Alu 3 303 -8 2409 69 0 3 chr21 32119681 32119984 -2787586 - AluY SINE Alu -9 302 1 387 278 42 84 chr21 32121293 32121484 -2786086 - L1ME4a LINE L1 0 6121 5939 311 336 56 0 chr21 32122839 32122946 -2784624 - L1M4 LINE L1 -1900 4246 4134 266 292 29 29 chr21 32123509 32123646 -2783924 - L1M4 LINE L1 -2295 3851 3715 393 152 51 130 chr21 32123654 32123704 -2783866 - Charlie1 DNA MER1_type 0 2761 2709 1891 119 47 4 chr21 32123704 32123982 -2783588 + AluJb SINE Alu 1 290 -22 393 152 51 130 chr21 32123982 32124027 -2783543 - Charlie1 DNA MER1_type -52 2709 2662 719 250 53 24 chr21 32124027 32124235 -2783335 + MER20 DNA MER1_type 3 216 -3 393 152 51 130 chr21 32124235 32124315 -2783255 - Charlie1 DNA MER1_type -99 2662 2599 545 322 94 79 chr21 32124654 32124917 -2782653 - L1M4 LINE L1 -2452 3694 3436 311 0 26 0 chr21 32124917 32124956 -2782614 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1547 148 38 4 chr21 32124965 32125228 -2782342 - AluJo SINE Alu -38 274 3 545 322 94 79 chr21 32125228 32125443 -2782127 - L1M4 LINE L1 -2717 3429 3219 2097 121 24 0 chr21 32125443 32125740 -2781830 - AluSx SINE Alu -8 304 1 545 322 94 79 chr21 32125740 32125794 -2781776 - L1M4 LINE L1 -2927 3219 3167 2277 92 7 0 chr21 32125794 32126100 -2781470 - AluSx SINE Alu -4 308 1 545 322 94 79 chr21 32126100 32126352 -2781218 - L1M4 LINE L1 -2979 3167 2975 1407 143 96 4 chr21 32127882 32128162 -2779408 - LTR36 LTR ERV1 0 611 306 234 152 91 0 chr21 32128164 32128263 -2779307 + (TTGTG)n Simple_repeat Simple_repeat 1 108 0 214 278 17 28 chr21 32128281 32128461 -2779109 + (TTGGGG)n Simple_repeat Simple_repeat 1 178 0 344 138 86 13 chr21 32128363 32128515 -2779055 + (TTGTG)n Simple_repeat Simple_repeat 1 163 0 1275 171 47 13 chr21 32128628 32128927 -2778643 - LTR36 LTR ERV1 -302 309 1 1938 125 35 0 chr21 32128977 32129265 -2778305 - AluSx SINE Alu -14 298 1 3863 129 49 6 chr21 32129555 32130182 -2777388 - L1PB2 LINE L1 0 6151 5498 713 170 0 0 chr21 32130183 32130289 -2777281 - U6 snRNA snRNA 0 107 2 328 172 8 25 chr21 32130596 32130718 -2776852 + (TG)n Simple_repeat Simple_repeat 1 120 0 2033 232 70 12 chr21 32130774 32131232 -2776338 + MER21B LTR ERV1 1 500 -363 2178 76 41 0 chr21 32131232 32131523 -2776047 + AluY SINE Alu 1 303 -8 2033 232 70 12 chr21 32131523 32131634 -2775936 + MER21B LTR ERV1 500 603 -260 867 201 63 0 chr21 32131651 32131840 -2775730 + MER21B LTR ERV1 410 610 -253 906 245 82 27 chr21 32133792 32134181 -2773389 - MER21B LTR ERV1 -62 869 383 2231 62 10 39 chr21 32134405 32134713 -2772857 - AluY SINE Alu -12 299 1 296 177 21 94 chr21 32134754 32134850 -2772720 - MER21B LTR ERV1 -759 104 16 238 218 129 50 chr21 32135058 32135159 -2772411 - MLT1J LTR MaLR -207 304 196 343 231 66 0 chr21 32136422 32136513 -2771057 + Charlie5 DNA MER1_type 2444 2540 -72 723 107 76 61 chr21 32137028 32137066 -2770504 - FLAM_C SINE Alu -169 143 107 2103 110 0 58 chr21 32137066 32137394 -2770176 + AluSx SINE Alu 1 309 -3 723 107 76 61 chr21 32137394 32137486 -2770084 - FLAM_C SINE Alu -205 107 11 243 24 0 0 chr21 32137645 32137686 -2769884 - L1MA3 LINE L1 0 6305 6265 596 224 0 8 chr21 32138062 32138187 -2769383 + MIR SINE MIR 19 142 -120 396 0 0 0 chr21 32142311 32142355 -2765215 + (TG)n Simple_repeat Simple_repeat 2 45 0 3127 266 54 17 chr21 32142380 32143041 -2764529 - L1MA7 LINE L1 -1 6290 5569 2209 98 3 0 chr21 32143041 32143338 -2764232 - AluSx SINE Alu -14 298 1 3127 266 54 17 chr21 32143338 32143820 -2763750 - L1MA7 LINE L1 -722 5569 5106 195 358 98 0 chr21 32143894 32144017 -2763553 - MIR SINE MIR -15 247 113 394 159 54 35 chr21 32145125 32145445 -2762125 + (CACGT)n Simple_repeat Simple_repeat 1 326 0 902 169 36 0 chr21 32147943 32148109 -2759461 - FRAM SINE Alu -3 173 2 210 118 0 0 chr21 32148459 32148493 -2759077 + (TC)n Simple_repeat Simple_repeat 2 35 0 324 64 0 0 chr21 32148493 32148540 -2759030 + (CA)n Simple_repeat Simple_repeat 1 47 0 2003 68 115 4 chr21 32148703 32148982 -2758588 - AluSq SINE Alu -3 310 1 698 205 50 30 chr21 32149088 32149288 -2758282 - MLT1F1 LTR MaLR -1 566 363 817 133 0 0 chr21 32151831 32151951 -2755619 + AluJb SINE Alu 179 298 -14 2377 58 0 32 chr21 32153450 32153758 -2753812 - AluY SINE Alu -9 302 5 324 267 93 0 chr21 32153825 32153911 -2753659 - L2 LINE L2 -20 3252 3159 299 278 90 41 chr21 32156397 32156655 -2750915 - L1MCc LINE L1 -5786 636 17 2168 124 0 0 chr21 32156706 32157004 -2750566 + AluSx SINE Alu 1 298 -14 201 213 0 0 chr21 32157146 32157193 -2750377 + (TG)n Simple_repeat Simple_repeat 2 48 0 210 71 0 0 chr21 32158067 32158095 -2749475 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1591 79 0 53 chr21 32158116 32158344 -2749226 - AluSq SINE Alu -97 216 1 249 281 109 47 chr21 32158747 32158875 -2748695 - MLT1L LTR MaLR -333 282 147 21 36 0 0 chr21 32159116 32159144 -2748426 + AT_rich Low_complexity Low_complexity 1 28 0 557 339 53 33 chr21 32159336 32159581 -2747989 - L1M4 LINE L1 -1324 4822 4573 564 295 55 38 chr21 32159584 32160049 -2747521 - MLT1H LTR MaLR 0 549 36 324 221 39 0 chr21 32160417 32160494 -2747076 + MLT1J1 LTR MaLR 242 321 -125 604 213 8 0 chr21 32162656 32162783 -2744787 - MLT1B LTR MaLR -215 175 48 313 314 72 14 chr21 32163354 32163561 -2744009 + L1MC4 LINE L1 7353 7571 -471 820 249 57 62 chr21 32163813 32164219 -2743351 + Charlie2 DNA MER1_type 2355 2758 -104 838 210 10 26 chr21 32164225 32164420 -2743150 + AluJo SINE Alu 121 312 0 1034 158 0 0 chr21 32165820 32165984 -2741586 - AluSq SINE Alu -16 297 134 1952 137 20 0 chr21 32166012 32166305 -2741265 + AluSx SINE Alu 1 299 -13 489 358 60 0 chr21 32166690 32166908 -2740662 + MIR SINE MIR 22 252 -10 586 271 95 5 chr21 32166947 32167157 -2740413 - MLT1F LTR MaLR -1 541 313 346 270 61 27 chr21 32167234 32167382 -2740188 - MLT1F LTR MaLR -364 231 79 346 221 65 0 chr21 32168516 32168593 -2738977 - L1ME4a LINE L1 -72 6049 5968 336 229 47 18 chr21 32168622 32168881 -2738689 + (TG)n Simple_repeat Simple_repeat 1 266 0 284 70 39 93 chr21 32168915 32169044 -2738526 + (GTGTG)n Simple_repeat Simple_repeat 4 125 0 383 102 84 21 chr21 32169054 32169346 -2738224 + (TG)n Simple_repeat Simple_repeat 1 310 0 345 117 33 83 chr21 32169350 32169470 -2738100 + (GTGTG)n Simple_repeat Simple_repeat 1 114 0 309 102 78 30 chr21 32169472 32169639 -2737931 + (TG)n Simple_repeat Simple_repeat 1 175 0 364 93 76 35 chr21 32169703 32169875 -2737695 + (TG)n Simple_repeat Simple_repeat 1 179 0 317 325 80 66 chr21 32170830 32171104 -2736466 + L1ME LINE L1 5538 5815 -306 2220 110 3 10 chr21 32171247 32171556 -2736014 + AluSx SINE Alu 1 307 -5 2493 55 0 6 chr21 32172379 32172690 -2734880 - AluY SINE Alu -2 309 1 309 289 62 0 chr21 32173126 32173254 -2734316 + L1MEd LINE L1 660 795 -5410 307 343 20 0 chr21 32173303 32173402 -2734168 + L1MEd LINE L1 981 1081 -5124 888 317 70 38 chr21 32173410 32173816 -2733754 + L1MEd LINE L1 984 1371 -4844 2174 120 7 0 chr21 32173816 32174124 -2733446 + AluSx SINE Alu 1 310 -2 888 317 70 38 chr21 32174124 32174484 -2733086 + L1MEd LINE L1 1371 1718 -4497 1854 94 0 0 chr21 32174491 32174735 -2732835 + AluSq SINE Alu 1 244 -69 984 67 0 44 chr21 32174735 32174870 -2732700 - AluSq/x SINE Alu -170 143 15 1928 143 3 3 chr21 32175312 32175612 -2731958 - AluJb SINE Alu -7 305 6 298 343 124 25 chr21 32175768 32175969 -2731601 + MIR SINE MIR 14 234 -28 1777 156 7 10 chr21 32175993 32176301 -2731269 - AluSx SINE Alu -5 307 1 223 258 0 72 chr21 32178548 32178715 -2728855 + (CGGGG)n Simple_repeat Simple_repeat 1 155 0 2180 107 0 3 chr21 32180047 32180073 -2727497 - AluSx SINE Alu -1 311 286 195 69 0 0 chr21 32180073 32180102 -2727468 + (TG)n Simple_repeat Simple_repeat 2 30 0 2180 107 0 3 chr21 32180102 32180375 -2727195 - AluSx SINE Alu -26 286 13 2166 108 3 0 chr21 32180397 32180694 -2726876 - AluSg SINE Alu -12 298 1 354 336 89 0 chr21 32181374 32181520 -2726050 + L1MEd LINE L1 2051 2209 -4187 2047 128 0 3 chr21 32182536 32182834 -2724736 - AluSx SINE Alu -15 297 1 208 184 20 0 chr21 32184344 32184393 -2723177 + T-rich Low_complexity Low_complexity 6 55 0 243 185 44 22 chr21 32184444 32184579 -2722991 + (TG)n Simple_repeat Simple_repeat 1 138 0 263 283 36 24 chr21 32184607 32184773 -2722797 + (TATG)n Simple_repeat Simple_repeat 1 168 0 392 218 67 12 chr21 32184701 32184866 -2722704 + (TG)n Simple_repeat Simple_repeat 1 174 0 308 186 53 27 chr21 32184883 32185153 -2722417 + (TG)n Simple_repeat Simple_repeat 1 277 0 227 311 22 22 chr21 32185375 32185555 -2722015 + (TG)n Simple_repeat Simple_repeat 1 180 0 408 251 17 17 chr21 32185584 32185759 -2721811 + (GTGTG)n Simple_repeat Simple_repeat 1 175 0 194 31 0 62 chr21 32186115 32186147 -2721423 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1972 138 3 0 chr21 32186456 32186753 -2720817 - AluSg SINE Alu -12 298 1 952 104 0 15 chr21 32186753 32186888 -2720682 - AluSg SINE Alu -177 133 1 466 232 54 16 chr21 32186890 32187075 -2720495 - LOR1-int LTR ERV1 -3878 4242 4051 2339 69 0 35 chr21 32187984 32188302 -2719268 + AluSc SINE Alu 1 307 -2 1788 147 6 35 chr21 32188647 32188997 -2718573 - AluJo SINE Alu 0 312 1 240 193 0 0 chr21 32189347 32189404 -2718166 + L1MEd LINE L1 83 139 -5980 2290 89 3 6 chr21 32189404 32189717 -2717853 + AluSx SINE Alu 1 312 0 654 383 22 16 chr21 32189725 32190041 -2717529 + L1MEd LINE L1 122 439 -5680 296 330 0 0 chr21 32190052 32190143 -2717427 + L1MEd LINE L1 462 552 -5567 2292 90 17 0 chr21 32190389 32190690 -2716880 + AluSg SINE Alu 1 306 -4 2101 116 7 7 chr21 32198766 32199076 -2708494 - AluSp SINE Alu -3 310 1 228 244 0 0 chr21 32199396 32199441 -2708129 + (CA)n Simple_repeat Simple_repeat 1 45 0 2558 58 0 0 chr21 32200153 32200461 -2707109 - AluY SINE Alu -3 308 1 906 138 8 0 chr21 32200488 32200618 -2706952 + FLAM_C SINE Alu 3 133 0 1263 154 18 48 chr21 32200633 32200860 -2706710 + AluJo SINE Alu 1 220 -92 256 184 0 0 chr21 32200860 32200909 -2706661 + AluSq/x SINE Alu 86 134 -168 2035 129 3 0 chr21 32200911 32201205 -2706365 + AluSx SINE Alu 1 295 -17 397 258 0 43 chr21 32201211 32201304 -2706266 - L1MC4 LINE L1 -1339 6703 6615 437 239 0 22 chr21 32201261 32201353 -2706217 + L1MC4 LINE L1 6614 6703 -1339 763 229 0 0 chr21 32201368 32201499 -2706071 + AluSc SINE Alu 118 248 -61 1255 167 25 0 chr21 32201500 32201704 -2705866 + AluJo SINE Alu 86 294 -18 2162 89 10 10 chr21 32202887 32203191 -2704379 - AluSx SINE Alu -8 304 1 2410 58 0 0 chr21 32203302 32203596 -2703974 + AluY SINE Alu 1 294 -17 1749 186 6 10 chr21 32205308 32205442 -2702128 + AluJb SINE Alu 1 134 -178 2391 96 3 0 chr21 32205442 32205743 -2701827 + AluSp SINE Alu 1 302 -11 1749 186 6 10 chr21 32205743 32205919 -2701651 + AluJb SINE Alu 134 310 -2 549 76 0 0 chr21 32206484 32206550 -2701020 - AluS SINE Alu -236 77 12 318 277 27 0 chr21 32206568 32206680 -2700890 - L1P LINE L1 -3106 3040 2926 430 145 60 0 chr21 32206710 32206793 -2700777 - U6 snRNA snRNA 0 107 20 2655 114 7 36 chr21 32206793 32207231 -2700339 - LTR3b LTR ERVK 0 437 13 3188 189 21 46 chr21 32207310 32208036 -2699534 - L1 LINE L1 -3222 3945 3244 1676 189 0 7 chr21 32208036 32208322 -2699248 + AluJo SINE Alu 2 285 -27 3188 189 21 46 chr21 32208322 32208466 -2699104 - L1 LINE L1 -3923 3244 3098 846 286 47 42 chr21 32208506 32208911 -2698659 - L1 LINE L1 -6761 407 1 508 145 19 38 chr21 32208911 32209050 -2698520 - L1M2 LINE L1 -864 5436 5296 2194 123 0 16 chr21 32209050 32209076 -2698494 - AluSx SINE Alu 0 312 287 224 77 26 0 chr21 32209076 32209115 -2698455 + (TA)n Simple_repeat Simple_repeat 2 41 0 2194 123 0 16 chr21 32209115 32209405 -2698165 - AluSx SINE Alu -25 287 1 508 145 19 38 chr21 32209405 32209789 -2697781 - L1M2 LINE L1 -1004 5296 4887 1780 163 20 7 chr21 32210053 32210347 -2697223 - AluJo SINE Alu -14 298 1 2602 38 0 35 chr21 32212453 32212766 -2694804 + AluY SINE Alu 1 302 -9 2373 88 0 3 chr21 32213223 32213517 -2694053 + AluSx SINE Alu 1 293 -19 23 33 0 0 chr21 32213517 32213547 -2694023 + AT_rich Low_complexity Low_complexity 1 30 0 189 265 29 29 chr21 32213584 32213652 -2693918 - MIR SINE MIR -97 165 98 867 213 12 0 chr21 32213745 32213914 -2693656 + FRAM SINE Alu 1 171 -5 2086 124 10 0 chr21 32214069 32214360 -2693210 - AluJb SINE Alu -18 294 1 406 229 29 19 chr21 32214446 32214551 -2693019 - L1PB3 LINE L1 -23 6131 6026 305 302 62 16 chr21 32214672 32214801 -2692769 - L1ME LINE L1 -372 5749 5615 2134 107 28 0 chr21 32214839 32215130 -2692440 + AluSx SINE Alu 1 299 -13 1717 151 25 4 chr21 32215279 32215557 -2692013 + AluSx SINE Alu 14 297 -15 2258 105 0 3 chr21 32215727 32216022 -2691548 + AluSx SINE Alu 1 294 -18 1724 231 55 23 chr21 32216022 32216356 -2691214 - L1MD1 LINE L1 -20 6222 5865 1797 168 3 3 chr21 32216356 32216654 -2690916 - AluJo SINE Alu -14 298 1 1724 231 55 23 chr21 32216654 32216833 -2690737 - L1MD1 LINE L1 -377 5865 5693 2319 92 10 3 chr21 32217506 32217812 -2689758 - AluSg SINE Alu -2 308 1 438 202 0 15 chr21 32217821 32217968 -2689602 - L1P5 LINE L1 -663 5488 5350 1588 164 29 11 chr21 32218353 32218628 -2688942 + AluJb SINE Alu 1 280 -32 997 283 77 31 chr21 32218661 32219134 -2688436 - L1M4 LINE L1 -4833 1709 1199 2295 114 0 0 chr21 32219134 32219433 -2688137 - AluSx SINE Alu -13 299 1 997 283 77 31 chr21 32219433 32219580 -2687990 - L1M4 LINE L1 -5343 1199 1060 892 217 43 10 chr21 32219875 32220082 -2687488 + MER58C DNA MER1_type 2 215 0 1790 169 7 3 chr21 32220149 32220444 -2687126 + AluJo SINE Alu 1 296 -16 2452 132 105 70 chr21 32220774 32220942 -2686628 + LTR24B LTR ERV1 8 169 -407 3009 149 67 2 chr21 32220942 32221437 -2686133 + MER1A DNA MER1_type 1 527 0 2452 132 105 70 chr21 32221437 32221813 -2685757 + LTR24B LTR ERV1 169 571 -5 1596 130 22 84 chr21 32221827 32222150 -2685420 + AluJb SINE Alu 1 303 -9 22 0 0 0 chr21 32222601 32222623 -2684947 + GC_rich Low_complexity Low_complexity 1 22 0 32 95 0 0 chr21 32222772 32222867 -2684703 + GC_rich Low_complexity Low_complexity 1 95 0 219 271 0 17 chr21 32224066 32224125 -2683445 + T-rich Low_complexity Low_complexity 37 94 0 1870 111 3 102 chr21 32224772 32225116 -2682454 - AluSx SINE Alu -2 310 1 817 208 44 0 chr21 32225804 32225963 -2681607 - FRAM SINE Alu 0 166 1 2301 102 3 0 chr21 32225999 32226302 -2681268 - AluSx SINE Alu -8 304 1 2503 72 10 0 chr21 32227038 32227343 -2680227 - AluY SINE Alu -3 308 1 181 289 0 0 chr21 32227764 32227816 -2679754 + MIR SINE MIR 201 252 -10 1701 233 87 19 chr21 32227823 32228364 -2679206 - MER119 DNA MER1_type -1 582 5 180 111 0 0 chr21 32228527 32228554 -2679016 + (T)n Simple_repeat Simple_repeat 1 27 0 1231 181 5 23 chr21 32228591 32228807 -2678763 + AluJb SINE Alu 86 297 -15 2404 79 21 0 chr21 32228807 32229098 -2678472 + AluSc SINE Alu 1 297 -12 1791 159 28 3 chr21 32229453 32229736 -2677834 - AluJb SINE Alu -20 292 3 235 174 22 0 chr21 32229939 32229985 -2677585 + L2 LINE L2 2448 2494 -820 547 231 50 0 chr21 32230015 32230162 -2677408 - MLT1D LTR MaLR -343 162 1 2448 70 6 22 chr21 32230498 32230813 -2676757 - AluY SINE Alu -1 310 1 1204 139 12 0 chr21 32230875 32231048 -2676522 + FRAM SINE Alu 1 172 -4 315 323 110 13 chr21 32231621 32231776 -2675794 - L2 LINE L2 -1 3271 3102 429 224 87 22 chr21 32231836 32232019 -2675551 - L1MC5 LINE L1 -34 7927 7733 819 258 50 38 chr21 32232022 32232415 -2675155 + MLT1A2 LTR MaLR 1 365 -25 1335 122 0 0 chr21 32232484 32232664 -2674906 - AluSq SINE Alu 0 313 134 2256 78 0 90 chr21 32232665 32233000 -2674570 - AluSp SINE Alu -6 307 3 504 229 108 38 chr21 32233066 32233404 -2674166 - L1MC5 LINE L1 -379 7582 7157 2588 52 0 10 chr21 32233414 32233723 -2673847 - AluY SINE Alu -5 306 1 743 219 47 88 chr21 32233723 32234134 -2673436 - L1MC5 LINE L1 -931 7030 6695 2115 140 0 22 chr21 32234155 32234469 -2673101 - AluSx SINE Alu 0 312 6 799 182 42 0 chr21 32234644 32234809 -2672761 - MER5A DNA MER1_type -1 188 17 391 302 100 48 chr21 32234924 32235235 -2672335 - L1MC4a LINE L1 -1432 6376 6050 540 0 0 0 chr21 32236210 32236270 -2671300 + (TG)n Simple_repeat Simple_repeat 2 61 0 340 336 28 0 chr21 32237913 32238020 -2669550 + MIR SINE MIR 23 132 -130 922 153 15 9 chr21 32238140 32238417 -2669153 + MLT1A1 LTR MaLR 54 365 0 2490 78 0 0 chr21 32239473 32239782 -2667788 - AluY SINE Alu -2 309 1 331 228 65 0 chr21 32239985 32240077 -2667493 - MLT1B LTR MaLR 0 467 370 838 195 50 45 chr21 32240096 32240317 -2667253 - MLT1B LTR MaLR -168 222 1 2492 81 3 3 chr21 32240848 32241156 -2666414 - AluSp SINE Alu -5 308 1 520 312 45 9 chr21 32241268 32241489 -2666081 - MIR SINE MIR -28 234 6 276 353 50 10 chr21 32241846 32242047 -2665523 + MIR SINE MIR 48 256 -6 280 291 119 8 chr21 32242151 32242285 -2665285 + MIR SINE MIR 37 185 -77 2408 98 3 0 chr21 32242763 32243068 -2664502 - AluSx SINE Alu -4 308 3 1896 162 0 7 chr21 32243967 32244270 -2663300 + AluJo SINE Alu 1 301 -11 304 317 121 103 chr21 32244509 32244963 -2662607 + HAL1 LINE L1 229 690 -1817 1354 202 24 14 chr21 32245470 32245804 -2661766 + MSTD LTR MaLR 1 396 0 1994 130 45 0 chr21 32245902 32246194 -2661376 + AluSq SINE Alu 7 311 -2 569 229 141 6 chr21 32249707 32249877 -2657693 - L1MC4 LINE L1 -1043 6999 6807 341 316 95 25 chr21 32249883 32249973 -2657597 - L1MC4a LINE L1 -1126 6682 6600 2386 91 3 0 chr21 32249973 32250269 -2657301 + AluSg SINE Alu 1 297 -13 341 316 95 25 chr21 32250269 32250336 -2657234 - L1MC4a LINE L1 -1208 6600 6514 277 336 0 9 chr21 32250338 32250445 -2657125 - L1MC4a LINE L1 -1326 6482 6377 1631 190 27 10 chr21 32250726 32251021 -2656549 - AluJb SINE Alu -7 305 6 1441 142 57 64 chr21 32251023 32251304 -2656266 - AluJb SINE Alu -33 279 1 377 307 49 28 chr21 32251311 32251637 -2655933 - L1MEc LINE L1 -2306 3909 3577 2240 97 17 0 chr21 32251762 32252060 -2655510 - AluSp SINE Alu -10 303 1 2040 118 51 0 chr21 32252104 32252400 -2655170 - AluSx SINE Alu -1 311 1 847 331 65 46 chr21 32252495 32253208 -2654362 - L1MEc LINE L1 -2977 3238 2513 447 341 84 28 chr21 32253307 32253594 -2653976 - L1M4 LINE L1 -1089 5057 4755 2345 106 0 0 chr21 32253598 32253900 -2653670 - AluSg SINE Alu -8 302 1 880 243 98 9 chr21 32253988 32254293 -2653277 + MLT1G1 LTR MaLR 6 264 -266 531 225 119 13 chr21 32254306 32254457 -2653113 + MLT1G1 LTR MaLR 429 595 0 377 232 167 54 chr21 32254481 32254649 -2652921 - L1M4 LINE L1 -1539 4607 4421 1076 263 54 39 chr21 32254789 32255049 -2652521 - L1MEc LINE L1 -4313 2083 1828 2244 97 10 7 chr21 32255049 32255348 -2652222 - AluSq SINE Alu -7 306 7 1076 263 54 39 chr21 32255348 32255404 -2652166 - L1MEc LINE L1 -4568 1828 1759 1846 65 0 0 chr21 32255404 32255621 -2651949 - AluSg SINE Alu -93 217 1 1076 263 54 39 chr21 32255621 32255634 -2651936 - L1MEc LINE L1 -4637 1759 1748 677 264 59 17 chr21 32255635 32255935 -2651635 - L1MEc LINE L1 -4620 1776 1300 2333 78 7 19 chr21 32255935 32256244 -2651326 - AluSg SINE Alu -5 305 1 677 264 59 17 chr21 32256244 32256334 -2651236 - L1MEc LINE L1 -5096 1300 1215 2315 80 13 20 chr21 32256895 32257196 -2650374 - AluSp SINE Alu -14 299 1 1775 158 63 0 chr21 32257568 32257853 -2649717 - AluSx SINE Alu -9 303 1 312 27 0 0 chr21 32257918 32257955 -2649615 + (TG)n Simple_repeat Simple_repeat 1 37 0 696 215 94 65 chr21 32257964 32258336 -2649234 - L1MEc LINE L1 -5165 1231 849 468 297 111 39 chr21 32258422 32258863 -2648707 - L1MEc LINE L1 -5832 564 92 2268 134 0 0 chr21 32258871 32259178 -2648392 - AluSx SINE Alu -1 311 5 189 0 0 0 chr21 32259186 32259207 -2648363 + (T)n Simple_repeat Simple_repeat 1 21 0 302 200 21 126 chr21 32259269 32259364 -2648206 - L1MC4 LINE L1 -985 7057 6973 347 295 53 47 chr21 32259447 32259769 -2647801 - L1MD3 LINE L1 -1209 6786 6444 1588 119 9 0 chr21 32260256 32260482 -2647088 - AluSg/x SINE Alu 0 310 83 2186 120 3 0 chr21 32261300 32261592 -2645978 - AluSx SINE Alu -19 293 1 841 314 77 11 chr21 32263685 32264035 -2643535 - L1ME4a LINE L1 -165 5956 5584 195 268 0 0 chr21 32265148 32265189 -2642381 - L2 LINE L2 -95 3177 3137 1960 136 45 3 chr21 32265696 32265982 -2641588 + AluJo SINE Alu 1 298 -14 241 280 0 0 chr21 32266311 32266361 -2641209 + polypyrimidine Low_complexity Low_complexity 3 52 0 1296 314 52 5 chr21 32266404 32266983 -2640587 + L1MC4a LINE L1 6773 7378 -430 885 263 56 28 chr21 32267059 32267382 -2640188 + L1MD3 LINE L1 7646 7977 -18 1386 185 70 42 chr21 32267393 32267677 -2639893 + L1MB3 LINE L1 5817 6114 -69 1985 128 51 3 chr21 32267677 32267973 -2639597 - AluSx SINE Alu -2 310 1 1386 185 70 42 chr21 32267973 32268045 -2639525 + L1MB3 LINE L1 6114 6183 0 214 283 195 9 chr21 32268383 32268496 -2639074 - L2 LINE L2 0 3313 3180 353 264 69 45 chr21 32268522 32268972 -2638598 - L2 LINE L2 -204 3109 2313 416 225 176 35 chr21 32269078 32269305 -2638265 - L2 LINE L2 -1139 2175 1917 24 0 0 0 chr21 32269818 32269842 -2637728 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 32270615 32270636 -2636934 + AT_rich Low_complexity Low_complexity 1 21 0 2204 80 32 35 chr21 32270653 32270964 -2636606 - AluY SINE Alu -1 310 1 2145 132 0 0 chr21 32270994 32271289 -2636281 - AluSx SINE Alu -17 295 1 333 68 0 0 chr21 32271292 32271336 -2636234 + (CA)n Simple_repeat Simple_repeat 2 45 0 2233 97 0 3 chr21 32271336 32271490 -2636080 - AluSc SINE Alu -21 288 135 222 60 40 20 chr21 32271490 32271540 -2636030 + (TTTAA)n Simple_repeat Simple_repeat 3 53 0 2325 46 18 11 chr21 32271540 32271822 -2635748 - AluY SINE Alu -27 284 1 2233 97 0 3 chr21 32271822 32271955 -2635615 - AluSc SINE Alu -172 137 1 24 67 0 0 chr21 32271957 32272002 -2635568 + AT_rich Low_complexity Low_complexity 1 45 0 685 258 146 41 chr21 32272623 32272987 -2634583 - L2 LINE L2 -1 3312 2911 345 24 0 0 chr21 32274692 32274734 -2632836 + (TG)n Simple_repeat Simple_repeat 1 42 0 731 143 16 24 chr21 32276252 32276378 -2631192 - AluJo SINE Alu -177 135 11 306 286 133 0 chr21 32277061 32277166 -2630404 - L1ME LINE L1 -328 5793 5675 273 234 96 21 chr21 32277169 32277263 -2630307 - L1ME LINE L1 -473 5648 5548 181 208 130 65 chr21 32277937 32278014 -2629556 - L2 LINE L2 -6 3266 3185 2365 92 3 0 chr21 32278228 32278523 -2629047 + AluSg SINE Alu 1 296 -14 357 348 36 0 chr21 32278525 32278637 -2628933 - L2 LINE L2 0 3272 3157 1898 161 27 3 chr21 32278991 32279290 -2628280 - AluSx SINE Alu -6 306 1 689 306 48 42 chr21 32279314 32280148 -2627422 + L1ME LINE L1 4891 5753 -417 803 87 0 0 chr21 32280285 32280388 -2627182 - AluSg/x SINE Alu -15 294 192 1150 244 90 17 chr21 32281332 32281734 -2625836 + L1ME3 LINE L1 5703 6133 -29 189 0 0 0 chr21 32282853 32282874 -2624696 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 2285 84 0 0 chr21 32282877 32283152 -2624418 - AluSp SINE Alu -38 275 1 284 189 14 40 chr21 32283805 32283879 -2623691 - MER104 DNA MER2_type -1806 89 18 24 53 0 0 chr21 32284365 32284403 -2623167 + AT_rich Low_complexity Low_complexity 1 38 0 1808 143 0 0 chr21 32285876 32286135 -2621435 - AluJo SINE Alu -14 298 40 2424 78 10 0 chr21 32286156 32286451 -2621119 + AluSp SINE Alu 1 298 -15 2046 125 17 3 chr21 32287695 32287983 -2619587 + AluSx SINE Alu 1 292 -20 21 0 0 0 chr21 32288393 32288414 -2619156 + AT_rich Low_complexity Low_complexity 1 21 0 957 160 0 19 chr21 32289187 32289343 -2618227 + FRAM SINE Alu 3 155 -11 2203 129 0 3 chr21 32290917 32291227 -2616343 - AluSx SINE Alu -3 309 1 513 184 28 9 chr21 32291273 32291382 -2616188 - L1MB8 LINE L1 -5 6173 6063 1036 235 98 7 chr21 32291406 32291581 -2615989 - AluJb SINE Alu 0 302 91 1566 196 8 0 chr21 32291581 32291847 -2615723 - AluJo SINE Alu -44 268 1 1036 235 98 7 chr21 32291847 32291948 -2615622 - AluJb SINE Alu -211 91 1 1664 128 33 0 chr21 32292032 32292274 -2615296 + AluJb SINE Alu 40 289 -23 2464 201 66 10 chr21 32294936 32295712 -2611858 - MER21B LTR ERV1 -29 902 1 935 174 64 106 chr21 32295828 32296110 -2611460 + AluJo SINE Alu 28 297 -15 898 219 33 14 chr21 32300741 32300956 -2606614 - MER20 DNA MER1_type 0 219 1 2437 63 0 3 chr21 32301299 32301586 -2605984 + AluSg SINE Alu 1 286 -24 2452 100 0 0 chr21 32301817 32302126 -2605444 - AluSc SINE Alu 0 309 1 26 0 0 0 chr21 32303118 32303144 -2604426 + AT_rich Low_complexity Low_complexity 1 26 0 2077 136 0 9 chr21 32303169 32303485 -2604085 - AluSq SINE Alu 0 313 1 1863 154 17 0 chr21 32303569 32303862 -2603708 + AluJb SINE Alu 5 302 -10 2072 121 3 3 chr21 32303864 32304161 -2603409 + AluSx SINE Alu 1 297 -15 209 143 0 63 chr21 32305344 32305407 -2602163 + (TAAA)n Simple_repeat Simple_repeat 1 59 0 30 0 0 0 chr21 32305410 32305440 -2602130 + AT_rich Low_complexity Low_complexity 1 30 0 1015 151 13 0 chr21 32305444 32305603 -2601967 - AluJo/FRAM SINE Alu -18 294 134 2081 106 27 0 chr21 32305603 32305926 -2601644 - AluSp SINE Alu 0 313 1 2121 104 0 22 chr21 32305940 32306256 -2601314 - AluSg1 SINE Alu 0 309 1 1013 229 83 23 chr21 32306260 32307031 -2600539 - L1M4 LINE L1 -494 5690 4844 563 331 50 50 chr21 32307892 32308049 -2599521 + L1MC4 LINE L1 7720 7876 -166 2101 123 3 3 chr21 32308049 32308359 -2599211 - AluSx SINE Alu -2 310 1 563 331 50 50 chr21 32308359 32308524 -2599046 + L1MC4 LINE L1 7875 8042 0 591 149 0 0 chr21 32308928 32309015 -2598555 - AluJ/FLAM SINE Alu -225 87 1 1709 215 65 17 chr21 32309015 32309489 -2598081 - Charlie1 DNA MER1_type -575 2186 1690 731 253 74 11 chr21 32309520 32309871 -2597699 + L1MD2 LINE L1 5726 6135 -224 300 271 23 70 chr21 32310998 32311062 -2596508 - MIR SINE MIR 0 262 205 8154 135 29 23 chr21 32311062 32311262 -2596308 + HSMAR2 DNA Mariner 1 198 -1104 2177 89 7 0 chr21 32311262 32311569 -2596001 + AluSq SINE Alu 1 309 0 8154 135 29 23 chr21 32311569 32312660 -2594910 + HSMAR2 DNA Mariner 198 1301 -1 300 271 23 70 chr21 32312660 32312724 -2594846 - MIR SINE MIR -57 205 140 1776 97 115 0 chr21 32317079 32317358 -2590212 - AluSx SINE Alu -1 311 1 211 234 108 54 chr21 32318810 32318921 -2588649 + L2 LINE L2 2988 3104 -209 11796 146 35 18 chr21 32320006 32321004 -2586566 + Tigger1 DNA MER2_type 13 993 -1425 2095 148 0 0 chr21 32321004 32321315 -2586255 + AluSx SINE Alu 1 311 -1 11796 146 35 18 chr21 32321315 32322097 -2585473 + Tigger1 DNA MER2_type 993 1840 -578 2154 105 0 20 chr21 32322097 32322403 -2585167 - AluSq SINE Alu -13 300 1 11796 146 35 18 chr21 32322403 32322868 -2584702 + Tigger1 DNA MER2_type 1840 2296 -122 2096 109 0 35 chr21 32323335 32323505 -2584065 - AluSg SINE Alu -9 301 145 2215 86 0 10 chr21 32323505 32323819 -2583751 - AluY SINE Alu 0 311 1 2096 109 0 35 chr21 32323819 32323960 -2583610 - AluSg SINE Alu -165 145 1 228 86 0 0 chr21 32326189 32326224 -2581346 + (GGA)n Simple_repeat Simple_repeat 1 35 0 220 250 18 0 chr21 32327085 32327141 -2580429 - L2 LINE L2 -18 3254 3198 1667 169 14 3 chr21 32328701 32328991 -2578579 - AluJb SINE Alu -19 293 1 1685 184 7 7 chr21 32333048 32333357 -2574213 + AluJb SINE Alu 1 309 -3 784 246 35 25 chr21 32333768 32334053 -2573517 - L1M3 LINE L1 -617 5563 5276 1813 159 17 3 chr21 32334585 32334887 -2572683 - AluJo SINE Alu 0 312 7 1547 118 26 21 chr21 32335319 32335690 -2571880 - Charlie3 DNA MER1_type -1 2709 1 338 324 16 28 chr21 32337839 32338021 -2569549 + MER58A DNA MER1_type 1 180 -44 195 42 0 0 chr21 32338244 32338268 -2569302 + (A)n Simple_repeat Simple_repeat 1 24 0 2069 130 0 13 chr21 32339992 32340327 -2567243 - AluSx SINE Alu 0 312 1 2326 70 3 0 chr21 32343143 32343442 -2564128 + AluSp SINE Alu 3 302 -11 2082 114 44 0 chr21 32344646 32344944 -2562626 - AluSx SINE Alu -1 311 1 180 226 113 0 chr21 32345684 32345737 -2561833 + MIR SINE MIR 90 148 -60 1431 194 50 7 chr21 32348074 32348373 -2559197 - AluJo SINE Alu 0 312 1 900 201 120 0 chr21 32349904 32350138 -2557432 - MER21A LTR ERV1 -90 841 580 551 145 81 0 chr21 32350144 32350268 -2557302 - MER21A LTR ERV1 -667 264 131 1765 114 70 0 chr21 32352375 32352647 -2554923 - AluSq SINE Alu -22 291 1 240 116 23 0 chr21 32353174 32353217 -2554353 - MLT1G1 LTR MaLR -7 588 545 378 204 0 87 chr21 32358053 32358249 -2549321 + C-rich Low_complexity Low_complexity 1 179 0 186 330 85 51 chr21 32358648 32358942 -2548628 + L2 LINE L2 2869 3172 -100 4794 177 38 26 chr21 32359160 32360367 -2547203 - L1MC1 LINE L1 -1 6612 5391 186 43 0 0 chr21 32360385 32360408 -2547162 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 706 173 0 0 chr21 32360408 32360518 -2547052 - FLAM_C SINE Alu -31 112 3 892 264 78 0 chr21 32360526 32360859 -2546711 - L1MC1 LINE L1 -1050 5376 5018 343 262 126 0 chr21 32361528 32361631 -2545939 + L1 LINE L1 4403 4518 -1628 2305 173 127 38 chr21 32361637 32361783 -2545787 - L1MC1 LINE L1 -3879 2728 2596 1855 119 18 0 chr21 32361783 32362090 -2545480 - AluSx SINE Alu 0 312 1 2305 173 127 38 chr21 32362090 32362465 -2545105 - L1MC1 LINE L1 -4011 2596 2256 1739 140 72 0 chr21 32362465 32362744 -2544826 - AluJo SINE Alu -9 303 5 2305 173 127 38 chr21 32362744 32362898 -2544672 - L1MC1 LINE L1 -4351 2256 2117 1630 176 69 0 chr21 32362898 32363188 -2544382 + AluJo SINE Alu 1 310 -2 2305 173 127 38 chr21 32363188 32363604 -2543966 - L1MC1 LINE L1 -4490 2117 1417 1411 241 53 12 chr21 32364216 32364615 -2542955 - L1MB3 LINE L1 -301 5882 5468 368 351 7 13 chr21 32365578 32365732 -2541838 + (CGTG)n Simple_repeat Simple_repeat 2 154 0 443 215 89 7 chr21 32367135 32367270 -2540300 - MLT1C LTR MaLR -316 151 6 745 262 124 0 chr21 32368222 32368520 -2539050 - MLT1B LTR MaLR -54 336 2 189 0 0 0 chr21 32368529 32368550 -2539020 + (TG)n Simple_repeat Simple_repeat 2 22 0 2037 124 13 3 chr21 32368797 32368980 -2538590 - AluSq SINE Alu -3 310 121 306 0 0 0 chr21 32368980 32369014 -2538556 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2037 124 13 3 chr21 32369014 32369137 -2538433 - AluSq SINE Alu -192 121 1 194 202 258 0 chr21 32369418 32369507 -2538063 + MIR3 SINE MIR 47 158 -50 318 110 16 110 chr21 32370525 32370716 -2536854 + (CCCTG)n Simple_repeat Simple_repeat 3 175 0 303 108 0 124 chr21 32370788 32370974 -2536596 + (CCCTG)n Simple_repeat Simple_repeat 3 165 0 2429 87 0 0 chr21 32372356 32372668 -2534902 - AluSq SINE Alu -1 312 1 271 260 0 52 chr21 32374961 32375038 -2532532 + MLT1D LTR MaLR 84 156 -349 397 338 20 0 chr21 32375519 32375667 -2531903 - MER5B DNA MER1_type -18 160 10 261 179 15 30 chr21 32378120 32378187 -2529383 - L1M3 LINE L1 -531 5652 5587 2254 102 0 0 chr21 32379090 32379395 -2528175 - AluSx SINE Alu -7 305 1 1297 209 4 0 chr21 32379933 32380187 -2527383 - AluJo SINE Alu -57 255 1 679 221 39 11 chr21 32380187 32380368 -2527202 - L1M3 LINE L1 -555 5616 5431 190 264 139 28 chr21 32381596 32381740 -2525830 + L2 LINE L2 2842 3001 -312 208 231 19 0 chr21 32381855 32381907 -2525663 + L2 LINE L2 3215 3267 -5 3911 132 29 19 chr21 32382452 32383081 -2524489 - MER41B LTR ERV1 0 635 1 861 141 0 22 chr21 32384214 32384349 -2523221 - FLAM_C SINE Alu -1 132 1 898 197 69 69 chr21 32384710 32384819 -2522751 - Ricksha DNA DNA -25 3229 3121 2287 69 7 0 chr21 32384819 32385130 -2522440 + AluY SINE Alu 1 313 0 898 197 69 69 chr21 32385130 32385324 -2522246 - Ricksha DNA DNA -132 3122 2925 429 81 0 0 chr21 32385942 32386004 -2521566 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 2142 129 7 0 chr21 32386016 32386325 -2521245 - AluSx SINE Alu -1 311 1 325 186 12 70 chr21 32387175 32387261 -2520309 - MLT1C LTR MaLR -336 131 51 196 143 0 41 chr21 32387644 32387693 -2519877 + (CTGGGG)n Simple_repeat Simple_repeat 2 48 0 1310 259 29 6 chr21 32387905 32388248 -2519322 + L1MB3 LINE L1 5529 5879 -295 701 278 55 0 chr21 32388267 32388522 -2519048 + L1MB3 LINE L1 5915 6183 0 600 245 88 42 chr21 32388575 32388943 -2518627 - MLT1E3 LTR MaLR -158 461 106 21 0 0 0 chr21 32389776 32389797 -2517773 + AT_rich Low_complexity Low_complexity 1 21 0 519 250 0 0 chr21 32390202 32390326 -2517244 + MLT1G1 LTR MaLR 465 588 -7 1927 130 14 7 chr21 32390329 32390622 -2516948 + AluSx SINE Alu 1 295 -17 406 281 65 0 chr21 32390836 32390981 -2516589 - MER63 DNA MER1_type -31 1657 27 223 143 0 0 chr21 32391415 32391450 -2516120 + MIR SINE MIR 113 147 -115 202 349 6 36 chr21 32394372 32394538 -2513032 + (CATTC)n Simple_repeat Simple_repeat 3 163 0 2384 80 0 0 chr21 32397713 32398014 -2509556 - AluSx SINE Alu -6 306 6 499 342 46 36 chr21 32398033 32398220 -2509350 - L1 LINE L1 -2290 3856 3664 2156 105 3 0 chr21 32398220 32398514 -2509056 - AluSp SINE Alu -18 295 1 499 342 46 36 chr21 32398514 32398590 -2508980 - L1 LINE L1 -2482 3664 3590 1271 95 238 0 chr21 32399567 32399824 -2507746 + AluJb SINE Alu 34 284 -28 2162 111 0 13 chr21 32399940 32400238 -2507332 + AluSx SINE Alu 1 294 -18 847 137 0 30 chr21 32400248 32400379 -2507191 + FLAM_C SINE Alu 1 127 -16 2035 140 17 0 chr21 32400390 32400690 -2506880 + AluSx SINE Alu 1 305 -7 726 269 0 0 chr21 32400798 32401010 -2506560 - L1M4 LINE L1 -1005 5141 4930 953 108 0 0 chr21 32401794 32401942 -2505628 - L1P LINE L1 -4231 1915 1768 1804 151 79 19 chr21 32402130 32402448 -2505122 + MER1B DNA MER1_type 1 337 0 583 191 82 27 chr21 32403041 32403227 -2504343 - MER89 LTR ERV1 -90 469 268 2104 118 0 7 chr21 32403227 32403531 -2504039 + AluSx SINE Alu 1 302 -10 583 191 82 27 chr21 32403531 32403564 -2504006 - MER89 LTR ERV1 -291 268 238 378 219 31 0 chr21 32403756 32403852 -2503718 - MER89 LTR ERV1 -458 101 3 584 204 80 0 chr21 32403852 32404013 -2503557 - Charlie2 DNA MER1_type -82 2780 2607 1709 159 3 21 chr21 32404017 32404306 -2503264 + AluJb SINE Alu 1 284 -28 932 204 164 13 chr21 32404413 32404731 -2502839 + MLT1D LTR MaLR 135 500 -5 705 200 36 0 chr21 32406440 32406605 -2500965 + MER20 DNA MER1_type 3 173 -46 439 304 112 47 chr21 32408339 32408453 -2499117 - HAL1 LINE L1 -197 2310 2205 2561 55 0 3 chr21 32408453 32408765 -2498805 - AluY SINE Alu 0 311 1 1959 133 3 3 chr21 32408769 32409062 -2498508 - AluSx SINE Alu -19 293 1 439 304 112 47 chr21 32409062 32409156 -2498414 - HAL1 LINE L1 -304 2203 2083 1364 209 54 0 chr21 32409156 32409472 -2498098 - MER65A LTR ERV1 0 445 113 2407 81 0 0 chr21 32409503 32409810 -2497760 + AluSq SINE Alu 2 308 -5 2606 167 50 2 chr21 32409850 32410365 -2497205 + LTR9B LTR ERV1 105 644 0 350 230 0 0 chr21 32410365 32410439 -2497131 - MER65B LTR ERV1 -414 117 44 1834 116 15 0 chr21 32410442 32410701 -2496869 - AluSg SINE Alu -47 263 1 227 138 52 0 chr21 32410712 32410770 -2496800 - MER65B LTR ERV1 -470 61 1 1826 228 23 13 chr21 32410770 32411240 -2496330 - MER65B-int LTR ERV1 0 4871 4397 1472 240 50 25 chr21 32411267 32411631 -2495939 - MER65B-int LTR ERV1 -855 4016 3640 849 104 0 76 chr21 32411631 32411775 -2495795 - FLAM_C SINE Alu 0 133 1 1472 240 50 25 chr21 32411775 32411814 -2495756 - MER65B-int LTR ERV1 -1231 3640 3603 269 104 146 0 chr21 32411825 32411873 -2495697 - MER31-int LTR ERV1 -940 5391 5337 280 138 0 77 chr21 32411897 32411962 -2495608 - MER31-int LTR ERV1 -978 3958 3899 2081 109 0 17 chr21 32411962 32412264 -2495306 - AluSq SINE Alu -16 297 1 310 248 41 20 chr21 32412285 32412383 -2495187 - MER31-int LTR ERV1 -1010 5588 3723 26 0 0 0 chr21 32412413 32412439 -2495131 + AT_rich Low_complexity Low_complexity 1 26 0 360 274 11 0 chr21 32412456 32412551 -2495019 + MLT1A2 LTR MaLR 276 371 -3 185 172 0 0 chr21 32413360 32413389 -2494181 + L2 LINE L2 3230 3258 -14 1198 158 135 94 chr21 32413846 32414283 -2493287 - LTR8A LTR ERV1 0 727 273 202 53 0 53 chr21 32415135 32415173 -2492397 + (AGGGGG)n Simple_repeat Simple_repeat 6 41 0 2186 83 3 10 chr21 32415503 32415803 -2491767 + AluSg1 SINE Alu 4 301 -8 291 214 45 27 chr21 32416023 32416135 -2491435 + MLT1C LTR MaLR 1 114 -353 2368 100 0 0 chr21 32416155 32416465 -2491105 - AluSq SINE Alu -1 312 3 483 296 62 9 chr21 32416580 32416806 -2490764 + MLT1C LTR MaLR 214 451 -16 476 211 28 21 chr21 32416950 32417092 -2490478 + LTR37A LTR ERV1 284 426 0 277 260 0 0 chr21 32418220 32418293 -2489277 + MER20 DNA MER1_type 1 73 -146 632 245 126 47 chr21 32420369 32420687 -2486883 - MER2 DNA MER2_type 0 344 2 818 167 8 0 chr21 32420695 32420827 -2486743 - FLAM_A SINE Alu 0 133 1 546 179 11 6 chr21 32421163 32421342 -2486228 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 786 148 0 7 chr21 32421376 32421641 -2485929 + (TGGA)n Simple_repeat Simple_repeat 1 263 0 629 146 6 17 chr21 32421654 32421832 -2485738 + (TGGA)n Simple_repeat Simple_repeat 2 177 0 330 191 30 32 chr21 32422071 32422346 -2485224 + (TGAG)n Simple_repeat Simple_repeat 1 274 0 557 138 0 87 chr21 32422374 32422569 -2485001 + (TGAA)n Simple_repeat Simple_repeat 1 178 0 520 135 22 65 chr21 32422616 32422801 -2484769 + (TGAA)n Simple_repeat Simple_repeat 1 177 0 21 0 0 0 chr21 32422926 32422947 -2484623 + AT_rich Low_complexity Low_complexity 1 21 0 2195 92 0 0 chr21 32423360 32423663 -2483907 + AluSx SINE Alu 1 303 0 4196 116 14 33 chr21 32424267 32424513 -2483057 + MER41B LTR ERV1 1 250 -385 2303 60 0 17 chr21 32424513 32424811 -2482759 - AluY SINE Alu -18 293 1 1454 92 0 14 chr21 32424811 32425018 -2482552 - AluSg/x SINE Alu -12 298 95 4196 116 14 33 chr21 32425018 32425146 -2482424 + MER41B LTR ERV1 249 378 -257 1932 160 3 6 chr21 32425146 32425458 -2482112 + AluSx SINE Alu 1 311 -1 4196 116 14 33 chr21 32425458 32425726 -2481844 + MER41B LTR ERV1 378 633 -2 375 294 15 22 chr21 32425746 32425882 -2481688 - MER4D LTR ERV1 0 903 769 2829 202 13 50 chr21 32425997 32426154 -2481416 - MER4D LTR ERV1 -110 793 632 2275 94 0 0 chr21 32426154 32426452 -2481118 - AluSx SINE Alu -9 303 6 2829 202 13 50 chr21 32426452 32426973 -2480597 - MER4D LTR ERV1 -271 632 140 291 194 14 125 chr21 32426981 32427065 -2480505 - LTR38B LTR ERV1 0 610 547 2560 52 0 0 chr21 32427065 32427375 -2480195 + AluY SINE Alu 2 311 0 291 194 14 125 chr21 32427375 32427434 -2480136 - LTR38B LTR ERV1 -63 547 483 3667 145 55 3 chr21 32427554 32428230 -2479340 + MER50 LTR ERV1 1 711 -23 348 212 136 0 chr21 32428700 32428818 -2478752 - MER4D LTR ERV1 -769 134 1 558 108 0 0 chr21 32430155 32430238 -2477332 + (GGA)n Simple_repeat Simple_repeat 1 83 0 451 87 76 98 chr21 32431180 32431272 -2476298 - AluSg/x SINE Alu -18 291 202 1408 106 5 10 chr21 32431339 32431537 -2476033 - AluSq SINE Alu -116 197 1 1994 121 28 0 chr21 32432019 32432308 -2475262 - AluSx SINE Alu -15 297 1 2493 61 3 0 chr21 32432318 32432628 -2474942 - AluY SINE Alu 0 311 1 1835 164 0 3 chr21 32432630 32432946 -2474624 - AluJo SINE Alu 0 312 1 1334 166 0 14 chr21 32433088 32433311 -2474259 - AluJb SINE Alu -7 305 86 23 0 0 0 chr21 32433313 32433336 -2474234 + AT_rich Low_complexity Low_complexity 1 23 0 2243 96 0 10 chr21 32434104 32434273 -2473297 - AluSg SINE Alu -10 300 134 2257 101 7 0 chr21 32434273 32434579 -2472991 - AluSp SINE Alu -5 308 1 2243 96 0 10 chr21 32434579 32434712 -2472858 - AluSg SINE Alu -176 134 1 195 100 0 0 chr21 32434755 32434785 -2472785 + (A)n Simple_repeat Simple_repeat 1 30 0 1924 122 49 0 chr21 32434812 32435100 -2472470 + AluSx SINE Alu 1 302 -10 321 313 23 14 chr21 32435936 32436165 -2471405 + G-rich Low_complexity Low_complexity 1 230 0 217 349 0 0 chr21 32436594 32436680 -2470890 - MIR3 SINE MIR -16 192 107 402 234 76 38 chr21 32436913 32437097 -2470473 - MER20 DNA MER1_type 0 219 29 2356 57 3 13 chr21 32441260 32441559 -2466011 - AluY SINE Alu -15 296 1 2349 82 0 7 chr21 32442130 32442433 -2465137 - AluY SINE Alu -10 301 1 2284 93 13 0 chr21 32442461 32442762 -2464808 + AluSp SINE Alu 1 305 -8 395 222 139 20 chr21 32442762 32442792 -2464778 - L1MB5 LINE L1 -11 6169 6144 1527 193 34 14 chr21 32442792 32443088 -2464482 - AluJo SINE Alu -10 302 1 395 222 139 20 chr21 32443088 32443107 -2464463 - L1MB5 LINE L1 -36 6144 6129 1999 135 7 0 chr21 32443107 32443410 -2464160 - AluSx SINE Alu -7 305 1 395 222 139 20 chr21 32443410 32443541 -2464029 - L1MB5 LINE L1 -51 6129 5990 1172 161 16 0 chr21 32443746 32443939 -2463631 + AluJo SINE Alu 5 200 -112 1090 295 61 14 chr21 32443955 32444399 -2463171 - L1MB5 LINE L1 -197 5977 5513 348 248 206 21 chr21 32444524 32444665 -2462905 - MER5B DNA MER1_type -4 174 8 372 299 48 0 chr21 32444868 32445015 -2462555 + MER45A DNA AcHobo 1 154 -24 1878 122 32 0 chr21 32446423 32446702 -2460868 + AluJo SINE Alu 5 292 -20 2320 80 13 0 chr21 32446708 32447007 -2460563 + AluSg SINE Alu 1 303 -7 2070 113 0 3 chr21 32448096 32448389 -2459181 - AluSx SINE Alu -19 293 2 180 0 0 0 chr21 32449250 32449270 -2458300 + (A)n Simple_repeat Simple_repeat 1 20 0 212 240 16 50 chr21 32450943 32451064 -2456506 + C-rich Low_complexity Low_complexity 3 119 0 23 33 0 0 chr21 32451394 32451424 -2456146 + GC_rich Low_complexity Low_complexity 1 30 0 208 143 0 0 chr21 32451840 32451875 -2455695 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 246 305 110 0 chr21 32453686 32453768 -2453802 + MIR SINE MIR 51 141 -121 1539 213 70 12 chr21 32454277 32454606 -2452964 - MER7A DNA MER2_type 0 346 1 1937 127 3 16 chr21 32455060 32455367 -2452203 + AluJo SINE Alu 1 303 -9 186 43 0 0 chr21 32457617 32457640 -2449930 + (TCC)n Simple_repeat Simple_repeat 2 24 0 276 364 6 0 chr21 32458797 32458970 -2448600 + (TG)n Simple_repeat Simple_repeat 1 174 0 2886 180 35 35 chr21 32459682 32460397 -2447173 + MER49 LTR ERV1 199 913 -10 219 195 27 34 chr21 32460759 32460908 -2446662 + (TG)n Simple_repeat Simple_repeat 1 148 0 341 296 24 48 chr21 32461743 32461910 -2445660 + L1MA10 LINE L1 6010 6334 0 877 189 34 0 chr21 32462488 32462663 -2444907 + MER4D LTR ERV1 547 727 -176 1510 136 124 8 chr21 32462674 32462932 -2444638 - AluJb SINE Alu -24 288 1 597 241 10 72 chr21 32462932 32462995 -2444575 + MER4D LTR ERV1 713 778 -125 2287 53 0 3 chr21 32462995 32463324 -2444246 + AluY SINE Alu 2 329 0 597 241 10 72 chr21 32463324 32463454 -2444116 + MER4D LTR ERV1 778 895 -8 2187 102 0 7 chr21 32463825 32464128 -2443442 + AluSx SINE Alu 1 301 -11 2138 109 0 7 chr21 32465215 32465518 -2442052 - AluSx SINE Alu -11 301 1 1958 97 54 0 chr21 32465629 32465907 -2441663 + AluSx SINE Alu 1 293 -19 1719 71 9 5 chr21 32466810 32467034 -2440536 - AluSg/x SINE Alu -8 302 78 2137 109 10 0 chr21 32467488 32467791 -2439779 + AluSq SINE Alu 1 306 -7 2498 11 4 0 chr21 32467791 32468115 -2439455 + AluYa5 SINE Alu 1 325 0 889 263 81 39 chr21 32468117 32468524 -2439046 - MLT1C LTR MaLR -36 431 8 539 216 0 0 chr21 32470161 32470286 -2437284 + L1MB8 LINE L1 4414 4538 -1608 1054 171 6 0 chr21 32470287 32470468 -2437102 + AluSg/x SINE Alu 128 309 -1 564 234 71 0 chr21 32470468 32470622 -2436948 + L1MB8 LINE L1 4535 4699 -1447 737 206 5 62 chr21 32470591 32470800 -2436770 + L1MB8 LINE L1 5933 6129 -49 1812 141 7 18 chr21 32470867 32471144 -2436426 - AluJb SINE Alu -34 278 5 25 31 0 0 chr21 32472339 32472371 -2435199 + GC_rich Low_complexity Low_complexity 1 32 0 243 216 0 88 chr21 32472498 32472623 -2434947 + G-rich Low_complexity Low_complexity 6 119 0 425 265 15 58 chr21 32472657 32473270 -2434300 + G-rich Low_complexity Low_complexity 1 586 0 253 275 18 42 chr21 32473399 32473566 -2434004 + (GGGTG)n Simple_repeat Simple_repeat 3 165 0 409 300 146 35 chr21 32473943 32474230 -2433340 + L1MC3 LINE L1 7467 7785 0 2489 53 0 34 chr21 32474513 32474835 -2432735 - AluY SINE Alu 0 311 1 1671 99 113 55 chr21 32474837 32474978 -2432592 - AluYa5 SINE Alu -2 309 178 261 0 0 0 chr21 32474978 32475007 -2432563 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1888 112 22 0 chr21 32475011 32475278 -2432292 - AluSg SINE Alu -35 275 3 1671 99 113 55 chr21 32475278 32475423 -2432147 - AluYa5 SINE Alu -135 176 1 1240 86 145 68 chr21 32475425 32475568 -2432002 - AluSx SINE Alu -3 309 140 2070 106 0 3 chr21 32475568 32475851 -2431719 - AluSg SINE Alu -24 286 5 1240 86 145 68 chr21 32475851 32475941 -2431629 - AluSx SINE Alu -172 140 58 2227 100 10 0 chr21 32475970 32476279 -2431291 - AluSx SINE Alu 0 312 1 1947 69 102 4 chr21 32476854 32477128 -2430442 - AluY SINE Alu -10 301 1 568 300 40 4 chr21 32478215 32478442 -2429128 + MER90 LTR ERV1 30 264 -311 683 326 75 68 chr21 32478868 32479077 -2428493 - L1M4 LINE L1 -803 5343 5137 2081 113 0 17 chr21 32479077 32479379 -2428191 - AluSg SINE Alu -13 297 1 683 326 75 68 chr21 32479379 32479773 -2427797 - L1M4 LINE L1 -1009 5137 4736 2307 100 0 0 chr21 32479961 32480260 -2427310 + AluSq SINE Alu 1 299 -14 779 147 17 2 chr21 32480275 32480506 -2427064 + AluJo SINE Alu 8 299 -13 2339 80 13 10 chr21 32480539 32480851 -2426719 - AluSp SINE Alu 0 313 1 2364 86 0 3 chr21 32480851 32481154 -2426416 - AluSp SINE Alu -11 302 1 1782 147 42 0 chr21 32481188 32481474 -2426096 + AluSx SINE Alu 1 298 -14 2395 87 0 3 chr21 32481533 32481845 -2425725 - AluSx SINE Alu -1 311 1 671 340 60 44 chr21 32483840 32484186 -2423384 + L1M4 LINE L1 4641 4995 -1151 2179 93 7 7 chr21 32484186 32484486 -2423084 + AluSx SINE Alu 1 300 -12 671 340 60 44 chr21 32484486 32484524 -2423046 + L1M4 LINE L1 4995 5031 -1115 1455 161 59 22 chr21 32484612 32484648 -2422922 - MER34B LTR ERV1 0 565 532 1950 125 14 0 chr21 32484648 32484959 -2422611 - AluSx SINE Alu 0 315 1 1455 161 59 22 chr21 32484959 32485243 -2422327 - MER34B LTR ERV1 -33 532 232 1800 146 58 48 chr21 32485244 32485622 -2421948 - MSTB LTR MaLR -1 425 44 533 138 0 0 chr21 32485736 32485823 -2421747 - MSTB LTR MaLR -339 87 1 521 194 46 0 chr21 32485823 32485931 -2421639 - MER34B LTR ERV1 -329 236 124 2730 234 57 34 chr21 32485931 32486630 -2420940 + L1M4 LINE L1 3877 4559 -1587 2201 99 7 0 chr21 32486630 32486922 -2420648 - AluSc SINE Alu -15 294 1 2730 234 57 34 chr21 32486922 32487032 -2420538 + L1M4 LINE L1 4559 4665 -1481 2164 113 23 0 chr21 32487032 32487332 -2420238 + AluSx SINE Alu 1 307 -5 2730 234 57 34 chr21 32487332 32487489 -2420081 + L1M4 LINE L1 4665 4866 -1280 4286 171 47 37 chr21 32487503 32487803 -2419767 - L1MB5 LINE L1 -17 6157 5861 2368 57 7 0 chr21 32487803 32488100 -2419470 - AluY SINE Alu -10 301 3 4286 171 47 37 chr21 32488100 32488460 -2419110 - L1MB5 LINE L1 -313 5861 5506 2415 68 13 0 chr21 32488460 32488767 -2418803 - AluY SINE Alu 0 311 1 4286 171 47 37 chr21 32488767 32489102 -2418468 - L1MB5 LINE L1 -668 5506 5153 2072 112 0 3 chr21 32489102 32489454 -2418116 - AluSq SINE Alu 0 351 1 4286 171 47 37 chr21 32489454 32489624 -2417946 - L1MB5 LINE L1 -1021 5153 4986 864 244 52 36 chr21 32489629 32489936 -2417634 + L1M4 LINE L1 4849 5160 -986 1010 114 14 123 chr21 32490479 32490690 -2416880 + AluSg/x SINE Alu 115 302 -8 1050 185 42 75 chr21 32490690 32490842 -2416728 - MLT1A1 LTR MaLR -66 299 161 2131 91 14 0 chr21 32490842 32491128 -2416442 - AluSx SINE Alu -22 290 1 1050 185 42 75 chr21 32491128 32491283 -2416287 - MLT1A1 LTR MaLR -204 161 2 2426 44 7 3 chr21 32491415 32491712 -2415858 + AluY SINE Alu 3 300 -11 223 122 73 0 chr21 32491985 32492026 -2415544 - MIR SINE MIR -56 152 109 390 349 48 26 chr21 32492490 32492679 -2414891 + MIR SINE MIR 51 243 -19 6229 93 12 3 chr21 32493250 32494098 -2413472 - LTR5 LTR ERVK 0 969 115 454 86 43 0 chr21 32494098 32494168 -2413402 - LTR5 LTR ERVK -896 73 1 347 228 11 33 chr21 32495625 32495717 -2411853 - MIR SINE MIR -114 148 59 182 335 52 29 chr21 32498180 32498353 -2409217 + L2 LINE L2 2932 3108 -164 328 222 37 0 chr21 32499544 32499625 -2407945 - MLT1C LTR MaLR -116 389 306 582 123 109 10 chr21 32499705 32499833 -2407737 - MLT1C LTR MaLR -204 186 53 248 57 5 153 chr21 32504395 32504604 -2402966 + (CACCC)n Simple_repeat Simple_repeat 1 178 0 320 116 6 81 chr21 32504556 32504728 -2402842 + (CCCCCA)n Simple_repeat Simple_repeat 3 161 0 1357 120 0 0 chr21 32508355 32508546 -2399024 + AluSq SINE Alu 116 306 -7 3143 169 90 15 chr21 32508548 32509168 -2398402 - L1MB3 LINE L1 -23 6160 5483 2096 95 0 74 chr21 32509168 32509506 -2398064 - AluSq SINE Alu 0 313 1 3143 169 90 15 chr21 32509506 32509565 -2398005 - L1MB3 LINE L1 -700 5483 5430 288 0 0 0 chr21 32509588 32509620 -2397950 + (CA)n Simple_repeat Simple_repeat 2 33 0 203 105 53 0 chr21 32509969 32510007 -2397563 + GA-rich Low_complexity Low_complexity 3 42 0 191 39 19 77 chr21 32510386 32510438 -2397132 + (CGGGG)n Simple_repeat Simple_repeat 1 49 0 28 86 0 0 chr21 32510649 32510719 -2396851 + GC_rich Low_complexity Low_complexity 1 70 0 327 89 30 0 chr21 32511912 32511980 -2395590 + Alu SINE Alu 1 48 -254 242 208 52 78 chr21 32513119 32513196 -2394374 + MIR3 SINE MIR 108 182 -26 2259 89 3 3 chr21 32513341 32513643 -2393927 + AluSx SINE Alu 1 302 -10 1313 77 0 56 chr21 32513646 32513842 -2393728 + AluSg/x SINE Alu 126 310 0 2274 99 0 0 chr21 32518950 32519252 -2388318 - AluSx SINE Alu -10 302 1 357 246 66 66 chr21 32519337 32519565 -2388005 - LTR29 LTR ERV1 -390 232 5 486 260 0 0 chr21 32521541 32521932 -2385638 + (CA)n Simple_repeat Simple_repeat 1 391 0 301 285 15 15 chr21 32526937 32527067 -2380503 + (TG)n Simple_repeat Simple_repeat 1 130 0 284 163 12 0 chr21 32527083 32527169 -2380401 + (TG)n Simple_repeat Simple_repeat 2 88 0 2002 97 14 11 chr21 32530847 32531125 -2376445 + AluSq SINE Alu 14 292 -21 270 365 52 4 chr21 32531503 32531736 -2375834 + MER33 DNA MER1_type 32 275 -49 206 244 26 13 chr21 32533723 32533801 -2373769 + GA-rich Low_complexity Low_complexity 2 80 0 220 200 0 0 chr21 32535838 32535878 -2371692 + (CTGGGG)n Simple_repeat Simple_repeat 6 45 0 553 269 34 0 chr21 32544982 32545149 -2362421 - MIR SINE MIR -57 151 12 2014 140 3 7 chr21 32547193 32547501 -2360069 + AluSx SINE Alu 2 308 -4 327 248 25 0 chr21 32549071 32549312 -2358258 + C-rich Low_complexity Low_complexity 1 247 0 307 227 32 0 chr21 32549325 32549479 -2358091 + C-rich Low_complexity Low_complexity 3 161 0 24 53 0 0 chr21 32549585 32549623 -2357947 + GC_rich Low_complexity Low_complexity 1 38 0 2051 172 112 27 chr21 32550253 32550457 -2357113 + LTR8A LTR ERV1 1 186 -541 3311 173 22 68 chr21 32550457 32551181 -2356389 + LTR8 LTR ERV1 1 691 0 2051 172 112 27 chr21 32551181 32551523 -2356047 + LTR8A LTR ERV1 186 593 -134 1283 81 0 5 chr21 32551547 32551732 -2355838 - MER4A LTR ERV1 0 664 481 2259 81 0 29 chr21 32551770 32551927 -2355643 + AluSq SINE Alu 1 146 -167 2791 95 95 5 chr21 32551927 32552338 -2355232 - LTR7 LTR ERV1 -2 448 1 2259 81 0 29 chr21 32552338 32552488 -2355082 + AluSq SINE Alu 146 299 -14 247 175 0 0 chr21 32552488 32552528 -2355042 - MER4D LTR ERV1 -196 676 637 2734 94 31 0 chr21 32552564 32552988 -2354582 - MER4A LTR ERV1 -227 437 1 754 66 33 25 chr21 32553330 32553452 -2354118 + MER4E LTR ERV1 1 123 -656 4854 115 28 51 chr21 32553453 32553798 -2353772 - MER4E LTR ERV1 0 779 427 1963 46 0 46 chr21 32553798 32554057 -2353513 + AluY SINE Alu 2 248 -63 4854 115 28 51 chr21 32554057 32554491 -2353079 - MER4E LTR ERV1 -352 427 17 2403 70 0 3 chr21 32554491 32554793 -2352777 + AluY SINE Alu 1 301 -10 4854 115 28 51 chr21 32554793 32554810 -2352760 - MER4E LTR ERV1 -762 17 1 229 219 48 86 chr21 32555535 32555640 -2351930 - MLT1E3 LTR MaLR -19 605 505 217 286 16 0 chr21 32555763 32555826 -2351744 + GA-rich Low_complexity Low_complexity 112 175 0 313 200 31 0 chr21 32556484 32556549 -2351021 + MER58A DNA MER1_type 1 67 -40 1801 141 3 24 chr21 32556549 32556700 -2350870 - AluSx SINE Alu 0 307 154 2729 92 102 7 chr21 32556700 32557111 -2350459 + LTR7 LTR ERV1 1 450 0 1801 141 3 24 chr21 32557111 32557272 -2350298 - AluSx SINE Alu -153 154 1 1845 156 78 13 chr21 32557307 32557653 -2349917 - MSTA LTR MaLR 0 428 51 2188 91 7 0 chr21 32557653 32557940 -2349630 - AluSx SINE Alu -23 289 1 1845 156 78 13 chr21 32557940 32557990 -2349580 - MSTA LTR MaLR -377 51 6 2094 175 73 19 chr21 32558014 32558425 -2349145 - Tigger2a DNA MER2_type -1 433 1 22 94 0 0 chr21 32560593 32560657 -2346913 + GC_rich Low_complexity Low_complexity 1 64 0 21 57 0 0 chr21 32560672 32560707 -2346863 + GC_rich Low_complexity Low_complexity 1 35 0 221 313 12 25 chr21 32560857 32561020 -2346550 + (GGGTG)n Simple_repeat Simple_repeat 1 161 0 286 241 5 84 chr21 32560901 32561092 -2346478 + (CGGGG)n Simple_repeat Simple_repeat 4 179 0 287 266 23 35 chr21 32560962 32561135 -2346435 + G-rich Low_complexity Low_complexity 5 175 0 185 0 40 0 chr21 32561527 32561552 -2346018 + (GGCTG)n Simple_repeat Simple_repeat 4 29 0 1906 151 0 3 chr21 32563263 32563568 -2344002 + AluSx SINE Alu 1 304 -8 749 127 22 0 chr21 32566300 32566434 -2341136 + MER2 DNA MER2_type 70 206 -138 461 18 0 0 chr21 32566453 32566509 -2341061 + AluY SINE Alu 1 56 -256 539 75 0 0 chr21 32566505 32566572 -2340998 - AluS SINE Alu -246 67 1 1097 109 6 0 chr21 32566747 32566922 -2340648 - MER41B LTR ERV1 0 635 460 805 99 0 0 chr21 32566922 32567033 -2340537 - AluSx SINE Alu -12 298 188 756 100 0 0 chr21 32567033 32567133 -2340437 - AluSx SINE Alu -213 100 1 2573 135 24 2 chr21 32567133 32567591 -2339979 - MER41B LTR ERV1 -167 468 1 268 308 142 8 chr21 32567761 32567881 -2339689 - MER68 LTR ERV1 -6 556 421 779 261 74 0 chr21 32567968 32568251 -2339319 - MER68 LTR ERV1 -258 304 1 266 273 82 18 chr21 32568614 32568724 -2338846 + MIR3 SINE MIR 45 161 -47 2082 155 20 31 chr21 32569157 32569719 -2337851 - LTR12 LTR ERV1 -219 2219 59 213 263 213 8 chr21 32569827 32569953 -2337617 - MIR SINE MIR -65 143 5 634 86 0 0 chr21 32569996 32570089 -2337481 - LTR12 LTR ERV1 -451 220 128 2125 132 0 7 chr21 32570090 32570112 -2337458 - AluSg SINE Alu -2 308 287 270 81 0 0 chr21 32570112 32570149 -2337421 + (TA)n Simple_repeat Simple_repeat 1 37 0 2125 132 0 7 chr21 32570149 32570436 -2337134 - AluSg SINE Alu -23 287 1 303 159 32 0 chr21 32570802 32570865 -2336705 - L1MD3 LINE L1 -10 7985 7921 904 234 89 3 chr21 32570937 32570950 -2336620 - L1MD2 LINE L1 -216 6143 6133 2159 127 0 0 chr21 32570950 32571257 -2336313 - AluSx SINE Alu -5 307 1 904 234 89 3 chr21 32571257 32571534 -2336036 - L1MD2 LINE L1 -226 6133 5828 1564 138 123 0 chr21 32571534 32571802 -2335768 - AluSx SINE Alu -10 302 2 2481 171 93 30 chr21 32571862 32572103 -2335467 - L1MDa LINE L1 -3890 2650 2426 1910 156 0 3 chr21 32572103 32572391 -2335179 - AluSx SINE Alu -17 295 9 2481 171 93 30 chr21 32572391 32572613 -2334957 - L1MDa LINE L1 -4114 2426 2219 2123 110 0 28 chr21 32572613 32572931 -2334639 + AluY SINE Alu 1 309 -2 2481 171 93 30 chr21 32572931 32573166 -2334404 - L1MDa LINE L1 -4321 2219 1907 1904 133 10 0 chr21 32573168 32573462 -2334108 - AluSg SINE Alu -13 297 1 2764 231 65 34 chr21 32573473 32574483 -2333087 - L1MDa LINE L1 -4815 1725 624 237 135 126 54 chr21 32576601 32576712 -2330858 + (CAGGA)n Simple_repeat Simple_repeat 1 119 0 278 284 0 25 chr21 32576634 32576715 -2330855 + G-rich Low_complexity Low_complexity 6 84 0 244 342 43 17 chr21 32577795 32577912 -2329658 - MIR SINE MIR -95 167 48 222 163 47 0 chr21 32578476 32578519 -2329051 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 1806 133 47 0 chr21 32578519 32578797 -2328773 - AluJb SINE Alu -21 291 1 2394 73 0 19 chr21 32578806 32579122 -2328448 - AluSx SINE Alu -2 310 1 353 277 70 55 chr21 32581383 32581654 -2325916 - MLT1C LTR MaLR -7 460 186 367 260 40 76 chr21 32581916 32582166 -2325404 - MLT1D LTR MaLR -260 245 5 1763 141 44 4 chr21 32582241 32582511 -2325059 + AluSx SINE Alu 1 281 -31 198 71 0 0 chr21 32582511 32582539 -2325031 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1976 123 30 0 chr21 32582612 32582912 -2324658 + AluSx SINE Alu 1 309 -3 1642 269 44 66 chr21 32582915 32583568 -2324002 - MLT1D-int LTR MaLR -97 1274 635 2345 91 7 0 chr21 32583568 32583877 -2323693 - AluSx SINE Alu -1 311 1 1642 269 44 66 chr21 32583877 32583904 -2323666 - MLT1D-int LTR MaLR -736 635 609 2290 205 5 60 chr21 32584020 32584391 -2323179 - MLT1D-int LTR MaLR -772 599 209 2263 116 0 0 chr21 32584391 32584701 -2322869 - AluSx SINE Alu -2 310 1 2290 205 5 60 chr21 32584701 32584721 -2322849 - MLT1D-int LTR MaLR -1162 209 189 3495 133 11 26 chr21 32584721 32585256 -2322314 - MER1A DNA MER1_type 0 527 1 2290 205 5 60 chr21 32585256 32585318 -2322252 - MLT1D-int LTR MaLR -1182 189 125 1774 125 47 0 chr21 32585318 32585597 -2321973 - AluJb SINE Alu -17 295 4 2290 205 5 60 chr21 32585597 32585761 -2321809 - MLT1D-int LTR MaLR -1246 125 14 311 292 55 60 chr21 32585773 32586134 -2321436 - MLT1C LTR MaLR 0 467 42 686 187 149 0 chr21 32586801 32586935 -2320635 - FRAM SINE Alu -12 154 1 538 212 62 38 chr21 32587177 32587337 -2320233 - MER5A DNA MER1_type -21 168 5 254 145 0 97 chr21 32587353 32587415 -2320155 - MER5A DNA MER1_type -129 60 5 311 169 13 78 chr21 32587408 32587485 -2320085 - MER5A DNA MER1_type -113 76 5 224 358 25 0 chr21 32591164 32591245 -2316325 + MIR SINE MIR 84 166 -96 771 112 35 18 chr21 32591770 32591940 -2315630 + (TGGA)n Simple_repeat Simple_repeat 3 175 0 737 128 23 17 chr21 32591931 32592015 -2315555 + (TAGA)n Simple_repeat Simple_repeat 3 85 -90 2080 126 0 3 chr21 32592015 32592316 -2315254 + AluSx SINE Alu 1 300 -12 737 128 23 17 chr21 32592316 32592403 -2315167 + (TAGA)n Simple_repeat Simple_repeat 85 175 0 472 173 8 16 chr21 32592464 32592591 -2314979 + (TAGA)n Simple_repeat Simple_repeat 4 129 0 735 167 0 17 chr21 32592605 32592785 -2314785 + (TAGA)n Simple_repeat Simple_repeat 3 179 0 1800 254 52 19 chr21 32593983 32594633 -2312937 + L1 LINE L1 2718 3389 -2757 1190 200 42 92 chr21 32594633 32595087 -2312483 - MSTD LTR MaLR 0 432 1 2753 203 55 2 chr21 32595087 32595722 -2311848 + L1 LINE L1 3385 4053 -2093 5896 178 16 32 chr21 32595720 32596014 -2311556 + L1MB3 LINE L1 2971 3268 -2915 2249 144 21 21 chr21 32596014 32596388 -2311182 - THE1C LTR MaLR -1 374 1 5896 178 16 32 chr21 32596388 32596495 -2311075 + L1MB3 LINE L1 3268 3375 -2808 2018 82 6 82 chr21 32596495 32596814 -2310756 + AluY SINE Alu 2 296 -15 5896 178 16 32 chr21 32596814 32597298 -2310272 + L1MB3 LINE L1 3375 3865 -2318 1799 165 14 0 chr21 32597298 32597583 -2309987 + AluJb SINE Alu 1 289 -23 5896 178 16 32 chr21 32597583 32598937 -2308633 + L1MB3 LINE L1 3865 6134 -49 1423 155 48 76 chr21 32598937 32599253 -2308317 + AluJb SINE Alu 1 307 -5 5896 178 16 32 chr21 32599253 32599302 -2308268 + L1MB3 LINE L1 6134 6182 -1 2987 243 77 7 chr21 32599326 32600264 -2307306 - L1ME1 LINE L1 -5 6161 5124 2315 81 3 0 chr21 32600264 32600561 -2307009 - AluY SINE Alu -13 298 1 2987 243 77 7 chr21 32600561 32600758 -2306812 - L1ME1 LINE L1 -1042 5124 4942 21 0 0 0 chr21 32601867 32601888 -2305682 + GC_rich Low_complexity Low_complexity 1 21 0 1297 193 71 79 chr21 32602131 32602344 -2305226 - MLT1B LTR MaLR 0 390 177 1725 148 13 7 chr21 32602344 32602648 -2304922 - AluJb SINE Alu -1 311 6 1687 163 0 27 chr21 32602655 32602956 -2304614 - AluJb SINE Alu -19 293 1 1297 193 71 79 chr21 32602956 32603127 -2304443 - MLT1B LTR MaLR -219 171 1 237 342 56 26 chr21 32603703 32604200 -2303370 - L1ME1 LINE L1 -2260 3886 3375 2006 120 17 3 chr21 32604260 32604559 -2303011 - AluSq SINE Alu -10 303 1 2299 88 0 0 chr21 32604704 32605009 -2302561 - AluY SINE Alu -6 305 1 2199 92 3 3 chr21 32607433 32607727 -2299843 - AluSg SINE Alu -16 294 1 1214 172 22 70 chr21 32608435 32608597 -2298973 - LTR8 LTR ERV1 0 691 546 2174 106 3 0 chr21 32608597 32608889 -2298681 - AluSq SINE Alu -18 295 3 1214 172 22 70 chr21 32608889 32608999 -2298571 - LTR8 LTR ERV1 -145 546 432 1712 208 19 67 chr21 32609017 32609497 -2298073 - LTR8 LTR ERV1 -234 457 1 837 206 103 5 chr21 32612886 32613109 -2294461 - MER77 LTR ERV1 -297 308 64 560 238 0 6 chr21 32613848 32614012 -2293558 + (CA)n Simple_repeat Simple_repeat 2 164 0 251 211 0 0 chr21 32614047 32614099 -2293471 - MER4-int LTR ERV1 -5436 1162 1111 566 221 14 14 chr21 32614115 32614419 -2293151 + (CATA)n Simple_repeat Simple_repeat 1 304 0 304 206 0 68 chr21 32614447 32614520 -2293050 - L1MCa LINE L1 -4363 2063 1996 465 248 0 0 chr21 32614520 32614621 -2292949 + (CA)n Simple_repeat Simple_repeat 1 101 0 529 214 17 21 chr21 32614621 32614857 -2292713 + (CATA)n Simple_repeat Simple_repeat 1 234 0 327 226 23 40 chr21 32615029 32615206 -2292364 + (ATGGTG)n Simple_repeat Simple_repeat 6 179 0 313 242 17 39 chr21 32615286 32615464 -2292106 + (ATGGTG)n Simple_repeat Simple_repeat 4 177 0 189 167 0 0 chr21 32616599 32616635 -2290935 + L2 LINE L2 3024 3059 -213 213 94 0 0 chr21 32617518 32617550 -2290020 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 1487 122 95 8 chr21 32617551 32617813 -2289757 - AluJb SINE Alu -24 288 4 234 0 0 0 chr21 32617841 32617867 -2289703 + (T)n Simple_repeat Simple_repeat 1 26 0 1326 224 75 0 chr21 32617937 32618280 -2289290 - L1MB7 LINE L1 -116 6068 5698 52 0 0 0 chr21 32618280 32618332 -2289238 + AT_rich Low_complexity Low_complexity 1 52 0 1937 106 53 3 chr21 32618355 32618637 -2288933 - AluSq SINE Alu -17 296 1 1511 211 54 76 chr21 32618637 32619045 -2288525 - L1M4 LINE L1 -441 5737 5328 2303 86 0 0 chr21 32619045 32619346 -2288224 - AluSg SINE Alu -9 301 1 1511 211 54 76 chr21 32619346 32619653 -2287917 - L1M4 LINE L1 -850 5328 5016 886 245 30 0 chr21 32619689 32619889 -2287681 - L1M4 LINE L1 -1208 4938 4733 264 143 0 0 chr21 32619888 32619930 -2287640 - L1M4 LINE L1 -1372 4774 4733 245 167 0 0 chr21 32619970 32620012 -2287558 - L1M4 LINE L1 -1372 4774 4733 258 143 0 0 chr21 32620085 32620127 -2287443 - L1M4 LINE L1 -1372 4774 4733 255 53 105 0 chr21 32620126 32620164 -2287406 - L1M4 LINE L1 -1372 4774 4733 263 143 0 0 chr21 32620204 32620246 -2287324 - L1M4 LINE L1 -1372 4774 4733 228 105 105 0 chr21 32620282 32620320 -2287250 - L1M4 LINE L1 -1372 4774 4733 235 191 0 0 chr21 32620360 32620407 -2287163 - L1M4 LINE L1 -1372 4774 4728 254 143 0 0 chr21 32620401 32620443 -2287127 - L1M4 LINE L1 -1372 4774 4733 226 191 0 0 chr21 32620442 32620484 -2287086 - L1M4 LINE L1 -1372 4774 4733 280 119 0 0 chr21 32620483 32620525 -2287045 - L1M4 LINE L1 -1372 4774 4733 263 143 0 0 chr21 32620524 32620566 -2287004 - L1M4 LINE L1 -1372 4774 4733 245 167 0 0 chr21 32620606 32620648 -2286922 - L1M4 LINE L1 -1372 4774 4733 291 95 0 0 chr21 32620721 32620763 -2286807 - L1M4 LINE L1 -1372 4774 4733 255 53 105 0 chr21 32620762 32620800 -2286770 - L1M4 LINE L1 -1372 4774 4733 263 143 0 0 chr21 32620840 32620882 -2286688 - L1M4 LINE L1 -1372 4774 4733 228 105 105 0 chr21 32620918 32620956 -2286614 - L1M4 LINE L1 -1372 4774 4733 270 170 0 0 chr21 32620996 32621043 -2286527 - L1M4 LINE L1 -1372 4774 4728 242 167 0 0 chr21 32621037 32621079 -2286491 - L1M4 LINE L1 -1372 4774 4733 277 145 0 81 chr21 32621058 32621120 -2286450 - L1M4 LINE L1 -1357 4789 4733 269 119 0 0 chr21 32621119 32621161 -2286409 - L1M4 LINE L1 -1372 4774 4733 280 119 0 0 chr21 32621160 32621202 -2286368 - L1M4 LINE L1 -1372 4774 4733 263 143 0 0 chr21 32621201 32621243 -2286327 - L1M4 LINE L1 -1372 4774 4733 245 167 0 0 chr21 32621242 32621284 -2286286 - L1M4 LINE L1 -1372 4774 4733 254 191 0 0 chr21 32621283 32621330 -2286240 - L1M4 LINE L1 -1372 4774 4728 277 145 0 81 chr21 32621345 32621407 -2286163 - L1M4 LINE L1 -1357 4789 4733 264 143 0 0 chr21 32621406 32621448 -2286122 - L1M4 LINE L1 -1372 4774 4733 5090 226 28 15 chr21 32621447 32623032 -2284538 - L1M4 LINE L1 -1372 4774 3100 512 233 47 0 chr21 32623033 32623162 -2284408 - L1M4 LINE L1 -2075 4071 3937 310 248 37 18 chr21 32623141 32623250 -2284320 - L1M4 LINE L1 -3029 3117 3007 288 268 70 21 chr21 32623297 32623439 -2284131 - L1ME4a LINE L1 -7 6114 5966 2350 82 0 19 chr21 32623615 32623933 -2283637 - AluSq SINE Alu -1 312 1 623 220 27 26 chr21 32624920 32625103 -2282467 - LTR45 LTR ERV1 0 525 355 599 268 66 0 chr21 32625612 32625795 -2281775 + MLT1D LTR MaLR 1 195 -310 775 227 102 0 chr21 32625827 32626043 -2281527 + MLT1D LTR MaLR 268 505 0 25 0 0 0 chr21 32628395 32628420 -2279150 + GC_rich Low_complexity Low_complexity 1 25 0 236 162 0 0 chr21 32629903 32629940 -2277630 + (TGG)n Simple_repeat Simple_repeat 3 39 0 815 179 6 0 chr21 32629945 32630124 -2277446 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 939 174 0 0 chr21 32630101 32630389 -2277181 + (TGG)n Simple_repeat Simple_repeat 1 288 0 233 324 120 0 chr21 32630537 32630645 -2276925 + L2 LINE L2 2939 3059 -254 213 312 21 21 chr21 32630737 32630830 -2276740 + L2 LINE L2 3161 3253 -19 2302 85 0 0 chr21 32631428 32631721 -2275849 + AluSg SINE Alu 1 293 -17 1302 169 0 22 chr21 32631879 32632104 -2275466 + AluJo SINE Alu 1 220 -92 328 83 0 0 chr21 32632104 32632152 -2275418 + AluJo SINE Alu 86 133 -169 607 156 141 37 chr21 32632175 32632310 -2275260 + AluJo SINE Alu 137 285 -17 276 227 80 0 chr21 32636355 32636430 -2271140 - MIR SINE MIR -117 145 65 1348 282 81 39 chr21 32639439 32639665 -2267905 - L1M4 LINE L1 -1545 4601 4386 2308 107 3 0 chr21 32639665 32639975 -2267595 - AluSq SINE Alu 0 313 3 1348 282 81 39 chr21 32639975 32640804 -2266766 - L1M4 LINE L1 -1760 4386 3468 2831 13 0 0 chr21 32640804 32641119 -2266451 - AluYb8 SINE Alu -3 315 1 1348 282 81 39 chr21 32641119 32641510 -2266060 - L1M4 LINE L1 -2678 3468 3095 824 165 0 8 chr21 32641695 32641828 -2265742 - FLAM_C SINE Alu 0 133 2 1951 117 3 30 chr21 32641866 32642166 -2265404 - AluSg SINE Alu -18 292 1 370 51 0 34 chr21 32642332 32642391 -2265179 + (CCCTAA)n Simple_repeat Simple_repeat 2 58 0 1452 195 122 0 chr21 32642513 32642883 -2264687 - MLT1C LTR MaLR 0 467 53 242 321 52 37 chr21 32642910 32643044 -2264526 + L2 LINE L2 1543 1678 -1636 323 378 0 0 chr21 32644615 32644795 -2262775 + (ATGGTG)n Simple_repeat Simple_repeat 1 180 0 233 297 69 0 chr21 32647160 32647261 -2260309 - L1ME LINE L1 -494 5627 5520 1814 162 10 3 chr21 32650107 32650410 -2257160 - AluJb SINE Alu -7 305 1 1904 100 4 0 chr21 32650445 32650695 -2256875 + AluSx SINE Alu 1 251 -61 198 0 0 0 chr21 32650695 32650717 -2256853 + (A)n Simple_repeat Simple_repeat 1 22 0 396 198 23 0 chr21 32650717 32650803 -2256767 - L1MB5 LINE L1 -47 6127 6040 423 252 14 29 chr21 32650807 32650946 -2256624 - L1MB5 LINE L1 -182 5992 5856 359 319 32 32 chr21 32655561 32655718 -2251852 + L1ME2 LINE L1 1285 1441 -5099 2347 92 0 0 chr21 32656111 32656414 -2251156 + AluSq SINE Alu 1 303 -10 525 221 23 15 chr21 32656798 32656929 -2250641 - MLT1A2 LTR MaLR -6 368 237 609 231 25 66 chr21 32656935 32657033 -2250537 + L1MA9 LINE L1 6080 6180 -132 1609 133 57 66 chr21 32657033 32657334 -2250236 + AluSx SINE Alu 6 303 -9 302 109 234 16 chr21 32657338 32657402 -2250168 + MADE1 DNA Mariner 1 78 -2 609 231 25 66 chr21 32657402 32657541 -2250029 + L1MA9 LINE L1 6183 6312 0 24 0 0 0 chr21 32658176 32658200 -2249370 + AT_rich Low_complexity Low_complexity 1 24 0 2042 137 0 7 chr21 32658348 32658654 -2248916 + AluSx SINE Alu 1 304 -8 419 303 84 0 chr21 32661388 32661543 -2246027 + L1ME2 LINE L1 2157 2324 -4397 806 281 78 9 chr21 32661904 32662224 -2245346 - L1MC4 LINE L1 -442 7600 7259 341 234 39 0 chr21 32662242 32662319 -2245251 + L1ME2 LINE L1 2645 2724 -3816 434 184 19 29 chr21 32662405 32662508 -2245062 + L1ME2 LINE L1 2859 2960 -3580 1287 178 0 0 chr21 32662508 32662721 -2244849 - AluJb SINE Alu -19 293 81 1010 235 75 29 chr21 32662829 32663227 -2244343 + L1ME2 LINE L1 3085 3508 -3032 2192 114 0 9 chr21 32663227 32663542 -2244028 + AluSx SINE Alu 1 312 0 1010 235 75 29 chr21 32663542 32663594 -2243976 + L1ME2 LINE L1 3508 3556 -2984 1022 277 50 7 chr21 32663598 32663880 -2243690 + L1ME2 LINE L1 3578 3871 -2669 628 207 101 24 chr21 32663881 32664089 -2243481 + L1ME2 LINE L1 4153 4376 -2164 1641 224 57 19 chr21 32664071 32665192 -2242378 + L1ME2 LINE L1 5270 6502 -56 385 231 83 25 chr21 32665126 32665247 -2242323 + L1MA10 LINE L1 6599 6726 -2 203 224 0 45 chr21 32665520 32665587 -2241983 + C-rich Low_complexity Low_complexity 2 65 0 225 264 45 39 chr21 32665663 32665893 -2241677 + C-rich Low_complexity Low_complexity 1 231 0 26 74 0 0 chr21 32666198 32666252 -2241318 + GC_rich Low_complexity Low_complexity 1 54 0 1800 92 0 0 chr21 32668615 32668854 -2238716 - AluSx SINE Alu -73 239 1 225 196 0 0 chr21 32670533 32670589 -2236981 + C-rich Low_complexity Low_complexity 2 57 0 441 154 29 36 chr21 32671127 32671376 -2236194 + (CCCTAA)n Simple_repeat Simple_repeat 1 247 0 368 245 101 75 chr21 32673904 32673952 -2233618 - L1MC5 LINE L1 -160 7801 7756 185 0 0 39 chr21 32673952 32673978 -2233592 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 368 245 101 75 chr21 32673978 32674117 -2233453 - L1MC5 LINE L1 -205 7756 7609 578 226 8 0 chr21 32675103 32675227 -2232343 + MLT1D LTR MaLR 2 126 -379 777 190 45 0 chr21 32675336 32675515 -2232055 + MLT1D LTR MaLR 314 500 -5 184 228 0 20 chr21 32675768 32675869 -2231701 + (CA)n Simple_repeat Simple_repeat 1 99 0 338 273 0 38 chr21 32675903 32676086 -2231484 + (CA)n Simple_repeat Simple_repeat 2 177 0 352 215 0 82 chr21 32676125 32676320 -2231250 + (CA)n Simple_repeat Simple_repeat 2 180 0 431 239 0 48 chr21 32676447 32676635 -2230935 + (CA)n Simple_repeat Simple_repeat 2 180 0 349 248 57 65 chr21 32676794 32676965 -2230605 - MIR SINE MIR -66 142 19 891 145 48 0 chr21 32678756 32678945 -2228625 - AluSg/x SINE Alu 0 326 131 25 31 0 0 chr21 32679248 32679280 -2228290 + AT_rich Low_complexity Low_complexity 1 32 0 801 167 28 94 chr21 32679294 32679474 -2228096 + AluSg/x SINE Alu 135 302 -8 240 35 0 0 chr21 32679474 32679503 -2228067 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 2511 43 0 3 chr21 32680756 32681058 -2226512 - AluY SINE Alu -10 301 1 1258 168 82 45 chr21 32681332 32681591 -2225979 - MSTA LTR MaLR 0 428 110 4829 115 32 35 chr21 32681591 32682372 -2225198 + MER4E LTR ERV1 1 779 0 1258 168 82 45 chr21 32682372 32682487 -2225083 - MSTA LTR MaLR -318 110 1 1547 207 20 3 chr21 32682905 32683209 -2224361 - AluJb SINE Alu -3 309 1 2379 90 3 0 chr21 32683649 32683961 -2223609 + AluSp SINE Alu 1 313 0 3209 163 12 12 chr21 32685597 32686187 -2221383 + MER50 LTR ERV1 122 711 -23 390 113 32 0 chr21 32686204 32686266 -2221304 + MER50-int LTR ERV1 1 64 -7141 1515 113 4 0 chr21 32686263 32686492 -2221078 + MER50-int LTR ERV1 1005 1234 -5971 1413 174 72 30 chr21 32686518 32686851 -2220719 + THE1C LTR MaLR 29 375 0 3324 124 33 11 chr21 32686851 32687422 -2220148 + MER50-int LTR ERV1 1238 1821 -5384 2232 146 15 10 chr21 32687468 32687873 -2219697 + MER41-int LTR ERV1 1003 1409 -3471 692 123 43 29 chr21 32687870 32688008 -2219562 + MER41-int LTR ERV1 4308 4447 -1499 635 217 103 54 chr21 32689262 32689487 -2218083 - MLT2D LTR ERVL 0 397 149 8095 68 4 19 chr21 32689487 32690509 -2217061 - LTR13 LTR ERVK 0 1007 1 635 217 103 54 chr21 32690509 32690576 -2216994 - MLT2D LTR ERVL -248 149 87 859 226 21 11 chr21 32690911 32691097 -2216473 + MER53 DNA DNA 1 188 -1 1239 176 69 29 chr21 32691580 32691886 -2215684 - THE1C LTR MaLR 0 375 58 243 200 86 0 chr21 32691878 32691948 -2215622 - THE1C LTR MaLR -242 133 58 243 200 86 0 chr21 32692002 32692072 -2215498 - THE1C LTR MaLR -242 133 58 254 186 43 0 chr21 32692115 32692185 -2215385 - THE1C LTR MaLR -231 144 72 246 152 51 0 chr21 32692188 32692247 -2215323 - THE1C LTR MaLR -242 133 72 258 186 86 0 chr21 32692250 32692320 -2215250 - THE1C LTR MaLR -242 133 58 243 200 86 0 chr21 32692312 32692382 -2215188 - THE1C LTR MaLR -242 133 58 431 156 28 83 chr21 32692436 32692545 -2215025 - THE1C LTR MaLR -242 133 31 302 309 12 0 chr21 32692861 32692942 -2214628 - MIR SINE MIR -64 144 63 1955 134 3 16 chr21 32693412 32693717 -2213853 + AluSx SINE Alu 6 306 -6 429 303 56 0 chr21 32694009 32694151 -2213419 - MIR3 SINE MIR -12 196 47 1224 162 47 10 chr21 32694896 32695192 -2212378 - MER101 LTR ERV1 -7 467 222 302 189 35 47 chr21 32695225 32695394 -2212176 + (CGGG)n Simple_repeat Simple_repeat 2 168 0 983 201 29 0 chr21 32695400 32695609 -2211961 - MER101B LTR ERV1 -355 215 1 3636 123 97 83 chr21 32695774 32696548 -2211022 + LTR1 LTR ERV1 1 785 0 17447 116 30 14 chr21 32696647 32697154 -2210416 + HUERS-P2 LTR ERV1 241 738 -2350 7807 14 9 2 chr21 32697154 32698326 -2209244 - L1PA3 LINE L1 0 6155 4976 17447 116 30 14 chr21 32698326 32700621 -2206949 + HUERS-P2 LTR ERV1 738 3088 0 3834 109 56 119 chr21 32700664 32701502 -2206068 + LTR1 LTR ERV1 1 785 0 732 147 9 0 chr21 32701736 32701852 -2205718 - FLAM_C SINE Alu -26 117 1 1331 92 5 60 chr21 32701879 32702096 -2205474 - L1PA10 LINE L1 -4 6164 5960 3624 127 38 10 chr21 32702900 32703475 -2204095 + LTR10C LTR ERV1 1 591 0 262 238 36 12 chr21 32704398 32704482 -2203088 + LTR23 LTR ERV1 352 437 0 2031 118 27 0 chr21 32704695 32704991 -2202579 - AluSg SINE Alu -6 304 1 603 247 0 20 chr21 32705698 32705844 -2201726 + MIR SINE MIR 8 150 -112 248 340 0 75 chr21 32706317 32706423 -2201147 + MIR3 SINE MIR 109 206 -2 303 202 0 43 chr21 32707250 32707344 -2200226 + MER4A LTR ERV1 1 90 -574 553 250 16 16 chr21 32707831 32708019 -2199551 + MER4C LTR ERV1 275 462 -3 2353 164 88 14 chr21 32708253 32708686 -2198884 - MER4C LTR ERV1 0 465 1 210 260 0 120 chr21 32710471 32710571 -2196999 - MIR3 SINE MIR -42 166 79 21 57 0 0 chr21 32710916 32710951 -2196619 + AT_rich Low_complexity Low_complexity 1 35 0 1730 155 0 60 chr21 32711558 32711704 -2195866 + AluSx SINE Alu 1 119 -193 2271 86 0 7 chr21 32711704 32712005 -2195565 + AluY SINE Alu 1 299 -12 1730 155 0 60 chr21 32712005 32712175 -2195395 + AluSx SINE Alu 119 298 -14 461 349 83 36 chr21 32712189 32712490 -2195080 + L1M4 LINE L1 3510 3824 -2322 2204 92 0 0 chr21 32715466 32715769 -2191801 - AluSx SINE Alu 0 303 1 2443 202 24 20 chr21 32715774 32716270 -2191300 - L1MB3 LINE L1 -2 6181 5684 554 302 42 14 chr21 32717397 32717609 -2189961 + L1MB7 LINE L1 5794 6011 -173 22 0 0 0 chr21 32721264 32721286 -2186284 + GC_rich Low_complexity Low_complexity 1 22 0 200 356 0 0 chr21 32721602 32721675 -2185895 + (CA)n Simple_repeat Simple_repeat 2 74 0 486 285 31 29 chr21 32721635 32722018 -2185552 + (CATG)n Simple_repeat Simple_repeat 1 383 0 336 252 99 0 chr21 32723369 32723500 -2184070 + MER53 DNA DNA 7 150 -39 256 245 64 0 chr21 32726395 32726491 -2181079 + MIR SINE MIR 43 145 -63 306 309 64 0 chr21 32729104 32729214 -2178356 - L3 LINE CR1 -346 1231 1115 2345 83 0 10 chr21 32729408 32729721 -2177849 - AluY SINE Alu -1 310 1 200 339 45 0 chr21 32730817 32730929 -2176641 + L2 LINE L2 3142 3258 -14 750 189 6 0 chr21 32733352 32733712 -2173858 + (CAGT)n Simple_repeat Simple_repeat 1 362 0 497 223 6 0 chr21 32733748 32733914 -2173656 + (CAGT)n Simple_repeat Simple_repeat 3 169 0 709 168 17 3 chr21 32733938 32734243 -2173327 + (CAGT)n Simple_repeat Simple_repeat 1 309 0 672 193 10 2 chr21 32734289 32734782 -2172788 + (CAGT)n Simple_repeat Simple_repeat 1 497 0 687 197 0 0 chr21 32734803 32734981 -2172589 + (CAGT)n Simple_repeat Simple_repeat 2 179 0 798 190 8 0 chr21 32735005 32735635 -2171935 + (CAGT)n Simple_repeat Simple_repeat 1 635 0 322 196 21 0 chr21 32735675 32735772 -2171798 + (CAGT)n Simple_repeat Simple_repeat 2 100 0 380 299 46 82 chr21 32736414 32736608 -2170962 + L1ME LINE L1 5583 5769 -352 232 230 35 124 chr21 32736953 32737066 -2170504 + L2 LINE L2 3197 3299 -14 899 151 0 22 chr21 32740639 32740958 -2166612 + (TCCA)n Simple_repeat Simple_repeat 1 311 0 371 211 137 0 chr21 32740966 32741061 -2166509 - L2 LINE L2 -3 3310 3203 536 218 116 0 chr21 32741840 32741987 -2165583 - MLT1C LTR MaLR -298 169 6 26 30 0 0 chr21 32743016 32743049 -2164521 + AT_rich Low_complexity Low_complexity 1 33 0 213 333 0 29 chr21 32744337 32744475 -2163095 + G-rich Low_complexity Low_complexity 4 137 0 364 183 33 44 chr21 32744546 32744785 -2162785 + (GGGTG)n Simple_repeat Simple_repeat 1 236 0 1472 156 46 1 chr21 32744971 32745648 -2161922 + L1MB3 LINE L1 5428 6182 -1 1716 82 5 0 chr21 32746027 32746234 -2161336 - AluSx SINE Alu -82 230 23 246 220 0 0 chr21 32746245 32746295 -2161275 - LOR1b LTR ERV1 -371 90 41 311 335 11 16 chr21 32747040 32747225 -2160345 + L1M4 LINE L1 4106 4289 -1857 212 216 62 10 chr21 32750199 32750296 -2157274 + (CAGG)n Simple_repeat Simple_repeat 4 105 0 321 123 0 0 chr21 32750574 32750639 -2156931 + (TGAG)n Simple_repeat Simple_repeat 4 68 0 24 0 0 0 chr21 32751360 32751384 -2156186 + AT_rich Low_complexity Low_complexity 1 24 0 350 108 77 15 chr21 32751397 32751462 -2156108 - AluJ/FLAM SINE Alu -233 69 1 317 363 41 6 chr21 32751486 32751657 -2155913 + L2 LINE L2 3095 3271 -1 641 307 71 49 chr21 32752223 32752853 -2154717 + L1ME LINE L1 529 1076 -5006 1628 198 16 3 chr21 32752856 32753164 -2154406 + AluJb SINE Alu 1 312 0 766 297 70 12 chr21 32753198 32753629 -2153941 + L1ME LINE L1 1230 1685 -4576 1125 264 55 22 chr21 32753899 32754301 -2153269 + MLT1C LTR MaLR 53 467 0 476 289 21 0 chr21 32754470 32754612 -2152958 - L1MC/D LINE L1 -883 5476 5332 670 269 14 5 chr21 32754625 32754837 -2152733 + L1ME1 LINE L1 5890 6103 -63 2492 62 3 0 chr21 32755428 32755718 -2151852 + AluY SINE Alu 1 291 -20 21 0 0 0 chr21 32755721 32755742 -2151828 + AT_rich Low_complexity Low_complexity 1 21 0 2171 238 29 35 chr21 32755742 32756603 -2150967 + L1ME LINE L1 2506 3361 -2719 3689 246 80 55 chr21 32756614 32756747 -2150823 - L1M4c LINE L1 -4592 2054 1926 2186 74 22 0 chr21 32756747 32757018 -2150552 - AluY SINE Alu -34 277 1 3689 246 80 55 chr21 32757018 32758815 -2148755 - L1M4c LINE L1 -4720 1926 90 1222 197 63 8 chr21 32759310 32759751 -2147819 - LTR10D LTR ERV1 0 513 1 279 113 0 0 chr21 32761880 32761933 -2145637 + (TGAG)n Simple_repeat Simple_repeat 4 56 0 361 319 25 0 chr21 32763598 32763717 -2143853 - MIR SINE MIR -126 136 15 1488 189 42 25 chr21 32764445 32764804 -2142766 + MLT1A1 LTR MaLR 1 365 0 296 197 0 16 chr21 32765040 32765101 -2142469 + Charlie5 DNA MER1_type 21 80 -2532 2141 136 3 0 chr21 32766487 32766795 -2140775 + AluSg SINE Alu 2 310 0 2219 102 3 7 chr21 32766801 32767095 -2140475 + AluSg SINE Alu 1 293 -17 386 339 80 8 chr21 32767330 32767581 -2139989 - Charlie4a DNA MER1_type -114 394 126 280 304 26 9 chr21 32767690 32767805 -2139765 + L1MEd LINE L1 962 1078 -5294 22 0 0 0 chr21 32767837 32767859 -2139711 + AT_rich Low_complexity Low_complexity 1 22 0 297 68 0 0 chr21 32769139 32769183 -2138387 + (TGAG)n Simple_repeat Simple_repeat 4 47 0 16084 111 3 0 chr21 32770417 32772865 -2134705 + L1P LINE L1 2180 4633 -1513 1390 288 34 6 chr21 32772863 32773484 -2134086 + L1MEd LINE L1 1331 2112 -4451 956 314 38 49 chr21 32773513 32773966 -2133604 + L1MEc LINE L1 1733 2180 -4216 3241 249 25 15 chr21 32773979 32774058 -2133512 + L1MEc LINE L1 2167 2244 -3971 2583 208 72 5 chr21 32774058 32774670 -2132900 + MER82 DNA MER2_type 1 653 0 3241 249 25 15 chr21 32774670 32775683 -2131887 + L1MEc LINE L1 2244 3225 -2990 4162 210 56 35 chr21 32775675 32776320 -2131250 + L1MEc LINE L1 3630 4260 -1978 1688 148 111 4 chr21 32776320 32776590 -2130980 + AluSg1 SINE Alu 1 299 -10 4162 210 56 35 chr21 32776590 32777672 -2129898 + L1MEc LINE L1 4260 5495 -743 323 262 47 0 chr21 32777941 32778048 -2129522 - L3 LINE CR1 -57 1520 1409 216 308 0 0 chr21 32778512 32778577 -2128993 - MIR SINE MIR -91 171 107 287 244 44 0 chr21 32781091 32781181 -2126389 + L1MEd LINE L1 3378 3471 -2911 589 207 86 8 chr21 32781410 32781603 -2125967 + L1MEd LINE L1 3781 3982 -2400 907 141 0 0 chr21 32781620 32781741 -2125829 - FLAM_C SINE Alu -22 121 1 771 274 65 32 chr21 32781858 32782307 -2125263 + L1MD3 LINE L1 6670 7171 -871 572 317 91 0 chr21 32782479 32782687 -2124883 + L1MD3 LINE L1 7535 7761 -234 1526 192 94 25 chr21 32783052 32783226 -2124344 + MLT1C LTR MaLR 1 162 -305 468 0 0 0 chr21 32783226 32783278 -2124292 + (CA)n Simple_repeat Simple_repeat 2 53 0 1526 192 94 25 chr21 32783278 32783540 -2124030 + MLT1C LTR MaLR 162 467 0 2333 297 29 20 chr21 32787147 32787684 -2119886 + L1M4 LINE L1 2602 3133 -3013 2059 162 46 14 chr21 32787684 32788097 -2119473 - MSTB LTR MaLR 0 426 1 2333 297 29 20 chr21 32788097 32788234 -2119336 + L1M4 LINE L1 3133 3267 -2879 2263 99 73 14 chr21 32788234 32788578 -2118992 + THE1B LTR MaLR 1 364 0 2333 297 29 20 chr21 32788578 32788896 -2118674 + L1M4 LINE L1 3267 3604 -2542 224 215 65 9 chr21 32790661 32790768 -2116802 + (CAGG)n Simple_repeat Simple_repeat 4 116 0 321 82 0 0 chr21 32791010 32791059 -2116511 + (TGAG)n Simple_repeat Simple_repeat 4 52 0 308 271 65 19 chr21 32791638 32791793 -2115777 - HAL1 LINE L1 -776 1731 1570 22 35 0 0 chr21 32791794 32791823 -2115747 + AT_rich Low_complexity Low_complexity 1 29 0 1825 150 54 3 chr21 32793182 32793389 -2114181 - AluSx SINE Alu 0 352 122 186 43 0 0 chr21 32793389 32793412 -2114158 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1825 150 54 3 chr21 32793412 32793541 -2114029 - AluSx SINE Alu -230 122 1 206 214 0 0 chr21 32793957 32793999 -2113571 + (TG)n Simple_repeat Simple_repeat 2 43 0 1172 168 86 41 chr21 32794118 32794409 -2113161 - L1MA9 LINE L1 0 6312 6009 2195 175 30 2 chr21 32794493 32794922 -2112648 - L1MA9 LINE L1 -314 5998 5558 186 43 0 0 chr21 32795001 32795024 -2112546 + (TC)n Simple_repeat Simple_repeat 1 23 0 415 336 75 53 chr21 32795032 32795446 -2112124 - L1M4 LINE L1 -2472 3674 3252 385 281 69 119 chr21 32795819 32796239 -2111331 - HAL1 LINE L1 -1187 1320 922 7042 162 13 2 chr21 32797163 32799077 -2108493 + L1PB1 LINE L1 3858 5795 -356 326 218 56 2 chr21 32799077 32799160 -2108410 + L1MC4 LINE L1 1995 6983 -1339 2357 111 0 8 chr21 32799183 32799560 -2108010 + L1PB1 LINE L1 5777 6150 -1 641 234 18 78 chr21 32799607 32799825 -2107745 - L1MB7 LINE L1 -302 5882 5678 470 274 71 6 chr21 32799815 32799983 -2107587 - L1M4 LINE L1 -451 6127 5949 2882 185 43 11 chr21 32803873 32804483 -2103087 + MER49 LTR ERV1 1 629 -294 1179 154 99 55 chr21 32804960 32805232 -2102338 + MER49 LTR ERV1 626 909 -14 2334 110 3 3 chr21 32805232 32805533 -2102037 - AluSx SINE Alu -11 301 1 183 170 0 0 chr21 32805610 32805657 -2101913 + CT-rich Low_complexity Low_complexity 2 48 0 1634 281 41 0 chr21 32805687 32806146 -2101424 + MER82 DNA MER2_type 7 484 -169 232 234 62 0 chr21 32806265 32806329 -2101241 - L1MC/D LINE L1 -1949 5859 5792 1756 231 133 11 chr21 32806337 32806865 -2100705 - MLT1E LTR MaLR 0 593 2 392 330 88 17 chr21 32807048 32807287 -2100283 - L1M4 LINE L1 -722 5914 5659 353 247 38 13 chr21 32807597 32807832 -2099738 - L1M4 LINE L1 -3649 2891 2642 2335 110 10 0 chr21 32807841 32808151 -2099419 - AluSq SINE Alu 0 313 1 671 278 98 45 chr21 32808151 32808417 -2099153 - L1M4 LINE L1 -4023 2698 2419 1949 234 26 18 chr21 32808419 32808927 -2098643 + LTR10D LTR ERV1 2 513 0 21 0 0 0 chr21 32809158 32809179 -2098391 + AT_rich Low_complexity Low_complexity 1 21 0 412 305 34 39 chr21 32809180 32809413 -2098157 - L1MEc LINE L1 -4482 2062 1827 342 0 0 0 chr21 32809554 32809592 -2097978 + (TC)n Simple_repeat Simple_repeat 1 38 0 282 56 0 0 chr21 32810985 32811021 -2096549 + (CTCA)n Simple_repeat Simple_repeat 2 37 0 1208 228 143 10 chr21 32812906 32813402 -2094168 + MER68 LTR ERV1 1 562 0 286 261 78 17 chr21 32814426 32814541 -2093029 + MLT1J2 LTR MaLR 42 163 -287 3050 167 16 0 chr21 32814952 32815497 -2092073 - L1 LINE L1 -1911 4235 3682 5020 179 20 29 chr21 32815520 32817515 -2090055 + L1MA7 LINE L1 4258 6175 -116 2124 116 11 0 chr21 32817515 32817799 -2089771 - AluSc SINE Alu -1 308 22 5020 179 20 29 chr21 32817799 32817912 -2089658 + L1MA7 LINE L1 6175 6287 -4 860 228 37 30 chr21 32818099 32818367 -2089203 + L1MB8 LINE L1 5439 5708 -458 523 254 59 55 chr21 32818408 32818680 -2088890 + L1MB8 LINE L1 5905 6177 -1 633 306 5 56 chr21 32818730 32818946 -2088624 - MER63A DNA MER1_type 0 210 6 535 350 98 14 chr21 32818959 32819236 -2088334 + L1ME3A LINE L1 5254 5553 -2232 785 265 62 25 chr21 32819239 32819563 -2088007 + L1ME3A LINE L1 5566 5901 -261 314 336 25 25 chr21 32819568 32819690 -2087880 + L1ME3A LINE L1 5935 6056 -114 1627 236 28 14 chr21 32819693 32820130 -2087440 + HAL1 LINE L1 1552 1994 -513 6433 88 6 2 chr21 32820509 32821644 -2085926 + THE1A-int LTR MaLR 404 1580 0 2548 93 3 3 chr21 32821644 32821999 -2085571 + THE1A LTR MaLR 1 355 0 258 197 84 14 chr21 32823178 32823320 -2084250 + (CCTG)n Simple_repeat Simple_repeat 4 155 0 266 286 0 0 chr21 32825610 32825673 -2081897 + L1MC/D LINE L1 5702 5764 -2044 208 139 0 0 chr21 32825992 32826028 -2081542 + (T)n Simple_repeat Simple_repeat 1 36 0 278 49 0 24 chr21 32827503 32827544 -2080026 + (CTCA)n Simple_repeat Simple_repeat 1 40 0 3540 253 65 65 chr21 32828440 32828518 -2079052 + L1M4 LINE L1 5 81 -6565 1766 149 61 30 chr21 32828518 32828881 -2078689 + THE1C LTR MaLR 2 375 0 3540 253 65 65 chr21 32828881 32830850 -2076720 + L1M4 LINE L1 81 2089 -4557 2741 258 25 22 chr21 32830841 32831874 -2075696 - L1M4 LINE L1 -2719 3427 2392 298 345 14 0 chr21 32832124 32832269 -2075301 - L1MEc LINE L1 -2562 4082 3936 841 264 19 5 chr21 32832276 32832492 -2075078 - L1ME1 LINE L1 -58 6108 5890 521 275 21 1 chr21 32832500 32832686 -2074884 + L1MC/D LINE L1 5327 5516 -828 1448 255 50 24 chr21 32832827 32833228 -2074342 - MLT1C LTR MaLR 0 467 51 2110 152 64 15 chr21 32833228 32833636 -2073934 + MSTA LTR MaLR 1 428 0 1448 255 50 24 chr21 32833636 32833689 -2073881 - MLT1C LTR MaLR -416 51 1 817 305 62 19 chr21 32833928 32834463 -2073107 - L1MEc LINE L1 -4576 2169 1612 486 343 57 9 chr21 32834526 32834736 -2072834 - L1MEc LINE L1 -5061 1401 1182 265 284 19 19 chr21 32834758 32834913 -2072657 - L1MEc LINE L1 -4966 1079 925 367 317 0 8 chr21 32835557 32835677 -2071893 - L2 LINE L2 0 3313 3195 833 110 8 8 chr21 32835754 32835881 -2071689 + FLAM_C SINE Alu 1 127 -6 222 143 0 0 chr21 32837533 32837582 -2069988 + (CTCA)n Simple_repeat Simple_repeat 4 52 0 1049 195 52 2 chr21 32839704 32840008 -2067562 - MLT1B LTR MaLR -11 379 1 1031 258 54 27 chr21 32840703 32841072 -2066498 + L1M4 LINE L1 361 739 -5803 3604 197 49 60 chr21 32841131 32841878 -2065692 + L1M4 LINE L1 720 1474 -5172 2137 125 0 29 chr21 32841878 32842191 -2065379 + AluSx SINE Alu 1 304 -8 3604 197 49 60 chr21 32842191 32842313 -2065257 + L1M4 LINE L1 1474 1596 -5050 1022 150 64 14 chr21 32842313 32842533 -2065037 + L1MB3 LINE L1 5945 6175 -8 3604 197 49 60 chr21 32842533 32842997 -2064573 + L1M4 LINE L1 1596 2061 -4585 2162 125 0 31 chr21 32842997 32843317 -2064253 + AluSg SINE Alu 1 310 0 3604 197 49 60 chr21 32843317 32843331 -2064239 + L1M4 LINE L1 2061 2074 -4572 259 239 0 0 chr21 32843331 32843402 -2064168 - L1 LINE L1 -2713 3433 3363 2695 234 34 36 chr21 32843448 32844388 -2063182 - L1 LINE L1 -2770 3376 2439 1516 182 18 46 chr21 32844416 32844696 -2062874 + AluJo SINE Alu 11 282 -30 3850 191 38 36 chr21 32844702 32845506 -2062064 + L1MB5 LINE L1 4910 5718 -456 2558 68 0 3 chr21 32845506 32845813 -2061757 + AluSx SINE Alu 1 306 -6 3850 191 38 36 chr21 32845813 32846271 -2061299 + L1MB5 LINE L1 5718 6174 0 237 98 0 0 chr21 32847789 32847830 -2059740 + (CTCA)n Simple_repeat Simple_repeat 4 44 0 2072 229 63 36 chr21 32850402 32851005 -2056565 + L1MB7 LINE L1 5557 6175 -9 868 334 67 58 chr21 32852412 32852953 -2054617 + L1M4 LINE L1 3223 3779 -2367 3542 180 23 16 chr21 32852953 32853005 -2054565 + L1MA9 LINE L1 5557 5607 -705 2540 64 3 16 chr21 32853005 32853319 -2054251 + AluY SINE Alu 1 310 -1 3542 180 23 16 chr21 32853319 32854017 -2053553 + L1MA9 LINE L1 5607 6312 0 868 334 67 58 chr21 32854017 32854465 -2053105 + L1M4 LINE L1 3779 4221 -1925 635 271 60 24 chr21 32855248 32855580 -2051990 + HAL1 LINE L1 1318 1661 -846 2207 113 14 3 chr21 32855802 32856095 -2051475 - AluSg SINE Alu -14 296 1 2470 57 44 0 chr21 32856301 32856598 -2050972 + AluSg SINE Alu 1 310 0 249 98 0 0 chr21 32856828 32856869 -2050701 + (CTCA)n Simple_repeat Simple_repeat 4 44 0 1748 147 35 11 chr21 32860394 32860679 -2046891 + AluJb SINE Alu 12 303 -9 930 211 45 150 chr21 32860682 32861150 -2046420 + MLT1C LTR MaLR 34 452 -15 971 288 52 26 chr21 32861812 32862271 -2045299 - MLT1D LTR MaLR -34 471 1 574 117 58 19 chr21 32862288 32862391 -2045179 - LTR64 LTR ERVK -5 553 447 280 154 108 0 chr21 32862385 32862419 -2045151 + LTR64 LTR ERVK 475 504 -54 2565 62 0 0 chr21 32862419 32862726 -2044844 - AluY SINE Alu -4 307 1 280 154 108 0 chr21 32862726 32862756 -2044814 + LTR64 LTR ERVK 504 546 -12 471 281 47 8 chr21 32863148 32863276 -2044294 + MER65-int LTR ERV1 712 844 -4027 723 169 47 27 chr21 32863170 32863318 -2044252 + LTR57-int LTR ERVL 310 460 -4883 2381 86 3 7 chr21 32863318 32863619 -2043951 + AluY SINE Alu 1 300 -11 1115 198 58 75 chr21 32863619 32863978 -2043592 + LTR64 LTR ERVK 188 540 -18 222 326 78 50 chr21 32865623 32865764 -2041806 - MIR SINE MIR -117 145 1 656 330 60 28 chr21 32866667 32867365 -2040205 - L1M4c LINE L1 -4569 1994 1182 209 184 0 0 chr21 32867644 32867682 -2039888 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 904 220 38 0 chr21 32867787 32867996 -2039574 - MER58A DNA MER1_type -3 221 5 1390 249 65 100 chr21 32869301 32870091 -2037479 + L1MCc LINE L1 658 1419 -5004 756 192 7 7 chr21 32870103 32870254 -2037316 + FRAM SINE Alu 21 171 -5 8067 262 55 29 chr21 32870261 32871128 -2036442 + L1MCc LINE L1 1414 2257 -4684 2116 101 4 0 chr21 32871128 32871395 -2036175 + AluSq SINE Alu 1 268 -45 8067 262 55 29 chr21 32871395 32871453 -2036117 + L1MCc LINE L1 2257 2312 -4629 2340 31 58 27 chr21 32871453 32871747 -2035823 + AluY SINE Alu 1 303 -8 8067 262 55 29 chr21 32871747 32871986 -2035584 + L1MCc LINE L1 2312 2543 -4398 2943 96 0 27 chr21 32871986 32872425 -2035145 - MSTA LTR MaLR -1 427 1 8067 262 55 29 chr21 32872425 32875153 -2032417 + L1MCc LINE L1 2543 5584 -1357 461 163 0 58 chr21 32875144 32875247 -2032323 + L1M4 LINE L1 5598 5697 -479 4511 199 49 18 chr21 32878229 32879342 -2028228 + L1 LINE L1 3859 5006 -1140 288 282 87 13 chr21 32879336 32879586 -2027984 + L1MDa LINE L1 1257 1572 -5047 2299 96 3 0 chr21 32879596 32879889 -2027681 + AluSc SINE Alu 11 304 -5 7389 182 25 31 chr21 32880754 32882732 -2024838 + L1MA4A LINE L1 11 1999 -4850 2531 70 0 0 chr21 32882732 32883033 -2024537 + AluY SINE Alu 1 301 -10 7389 182 25 31 chr21 32883033 32883115 -2024455 + L1MA4A LINE L1 1999 2080 -4769 1966 145 132 5 chr21 32883115 32883495 -2024075 + MSTA LTR MaLR 1 428 0 7389 182 25 31 chr21 32883495 32883855 -2023715 + L1MA4A LINE L1 2080 2611 -4238 2578 226 3 8 chr21 32883841 32884457 -2023113 + L1MA4A LINE L1 3128 3740 -3108 680 198 8 0 chr21 32884458 32884584 -2022986 + FLAM_A SINE Alu 11 137 -5 4894 181 16 4 chr21 32884584 32884878 -2022692 + L1MA4A LINE L1 3745 4034 -2814 1757 175 0 37 chr21 32884878 32885175 -2022395 + AluJb SINE Alu 1 286 -26 486 0 0 0 chr21 32885175 32885229 -2022341 + (TG)n Simple_repeat Simple_repeat 2 55 0 4894 181 16 4 chr21 32885229 32885970 -2021600 + L1MA4A LINE L1 4033 4794 -2054 7388 136 33 10 chr21 32888609 32888637 -2018933 + L1MA4A LINE L1 4786 4812 -2193 2258 123 78 5 chr21 32888637 32889036 -2018534 + MSTA LTR MaLR 1 428 0 7388 136 33 10 chr21 32889036 32889312 -2018258 + L1MA4A LINE L1 4812 5080 -1925 2554 111 89 2 chr21 32889312 32889726 -2017844 + LTR47A LTR ERVL 3 452 0 7388 136 33 10 chr21 32889726 32891576 -2015994 + L1MA4A LINE L1 5080 6994 -11 1832 176 0 10 chr21 32893825 32894120 -2013450 + AluJo SINE Alu 1 292 -20 422 272 63 44 chr21 32894176 32894659 -2012911 + L1MB4 LINE L1 1456 2164 -4793 1761 168 11 0 chr21 32894695 32894980 -2012590 + AluJo SINE Alu 1 288 -24 234 344 0 0 chr21 32894998 32895088 -2012482 + L1MB4 LINE L1 2382 2471 -4667 222 326 78 50 chr21 32896181 32896322 -2011248 + MIR SINE MIR 1 145 -117 249 357 28 0 chr21 32897622 32897765 -2009805 + L3 LINE CR1 1306 1452 -125 650 296 47 26 chr21 32897797 32898141 -2009429 + L1ME2 LINE L1 5714 6064 -100 2300 84 37 0 chr21 32898880 32899179 -2008391 + AluY SINE Alu 1 310 -1 894 330 60 40 chr21 32899561 32899662 -2007908 + HAL1 LINE L1 862 959 -1548 2688 40 0 0 chr21 32899662 32899960 -2007610 + AluY SINE Alu 1 298 -13 894 330 60 40 chr21 32899960 32900117 -2007453 + HAL1 LINE L1 959 1111 -1396 2851 66 59 12 chr21 32900117 32900154 -2007416 - MLT2A1 LTR ERVL 0 444 410 252 0 0 0 chr21 32900154 32900182 -2007388 + (TA)n Simple_repeat Simple_repeat 2 29 0 2851 66 59 12 chr21 32900182 32900567 -2007003 - MLT2A1 LTR ERVL -34 410 2 894 330 60 40 chr21 32900567 32900889 -2006681 + HAL1 LINE L1 1111 1455 -1052 249 287 0 0 chr21 32900890 32900977 -2006593 + HAL1b LINE L1 359 445 -903 642 207 7 22 chr21 32901218 32901353 -2006217 - FLAM_A SINE Alu 0 133 1 279 175 0 0 chr21 32901494 32901551 -2006019 + C-rich Low_complexity Low_complexity 1 57 0 905 226 52 0 chr21 32901930 32902200 -2005370 + L1MB4 LINE L1 3203 3486 -3471 7574 199 33 16 chr21 32902179 32904401 -2003169 + L1MB4 LINE L1 4325 6581 -410 988 270 15 15 chr21 32904402 32904626 -2002944 + L1M4 LINE L1 4714 4940 -1206 2108 174 2 5 chr21 32904626 32905034 -2002536 + L1MB4 LINE L1 6579 6985 -6 988 270 15 15 chr21 32905034 32905076 -2002494 + L1M4 LINE L1 4939 4980 -1166 299 278 39 32 chr21 32906013 32906165 -2001405 - MER63 DNA MER1_type -6 1682 677 603 308 67 13 chr21 32906768 32906992 -2000578 + MIR SINE MIR 2 237 -25 306 265 11 33 chr21 32907421 32907602 -1999968 + (CTCA)n Simple_repeat Simple_repeat 2 178 0 21 0 0 31 chr21 32909347 32909361 -1998209 + AT_rich Low_complexity Low_complexity 1 14 -17 1839 148 18 0 chr21 32909361 32909644 -1997926 + AluJb SINE Alu 1 288 -24 21 0 0 31 chr21 32909644 32909661 -1997909 + AT_rich Low_complexity Low_complexity 14 31 0 1247 113 40 0 chr21 32909663 32909840 -1997730 + AluJb SINE Alu 120 303 -9 245 281 116 20 chr21 32911266 32911412 -1996158 - MIR SINE MIR -59 203 44 372 203 59 34 chr21 32911437 32911555 -1996015 + MLT1D LTR MaLR 1 109 -396 1138 266 32 35 chr21 32911564 32911782 -1995788 - L1MA5A LINE L1 -3 6294 6076 2688 147 51 18 chr21 32911782 32912292 -1995278 - MER1A DNA MER1_type 0 527 1 1138 266 32 35 chr21 32912292 32912449 -1995121 - L1MA5A LINE L1 -221 6076 5920 8764 41 2 1 chr21 32915462 32916532 -1991038 + MER11C LTR ERVK 1 1071 0 351 294 0 0 chr21 32916747 32916927 -1990643 + (CA)n Simple_repeat Simple_repeat 1 180 0 365 0 22 0 chr21 32918449 32918494 -1989076 + (CA)n Simple_repeat Simple_repeat 1 46 0 219 180 0 20 chr21 32918503 32918553 -1989017 + GA-rich Low_complexity Low_complexity 1 49 0 216 0 0 0 chr21 32920854 32920878 -1986692 + (CCCCCA)n Simple_repeat Simple_repeat 2 25 0 25 0 0 0 chr21 32922044 32922069 -1985501 + GC_rich Low_complexity Low_complexity 1 25 0 279 255 9 38 chr21 32923259 32923365 -1984205 + GA-rich Low_complexity Low_complexity 1 103 0 325 307 47 0 chr21 32924158 32924310 -1983260 + MIR SINE MIR 58 219 -43 1560 201 7 3 chr21 32924468 32924761 -1982809 + AluJo SINE Alu 1 294 -18 222 69 0 0 chr21 32924762 32924791 -1982779 + (GGAA)n Simple_repeat Simple_repeat 4 32 0 264 149 0 0 chr21 32924791 32924838 -1982732 + (GGGGA)n Simple_repeat Simple_repeat 2 48 0 1859 172 88 13 chr21 32924839 32925216 -1982354 + MSTA LTR MaLR 20 424 -4 1287 178 13 9 chr21 32925941 32926171 -1981399 - AluJo SINE Alu 0 312 82 1978 135 140 11 chr21 32926362 32926741 -1980829 + MSTA LTR MaLR 1 428 0 513 0 0 0 chr21 32927177 32927234 -1980336 + (TG)n Simple_repeat Simple_repeat 2 58 0 907 105 0 0 chr21 32927235 32927349 -1980221 - AluJb SINE Alu -194 118 5 328 91 0 0 chr21 32927349 32927393 -1980177 - Alu SINE Alu -258 44 1 330 311 89 54 chr21 32928104 32928454 -1979116 - L1M4 LINE L1 -1699 4447 4086 446 291 37 11 chr21 32928543 32928732 -1978838 - L1M4 LINE L1 -2201 3945 3752 235 256 77 0 chr21 32928861 32928939 -1978631 + L2 LINE L2 2393 2476 -838 294 308 39 50 chr21 32929771 32930050 -1977520 - L1MC4 LINE L1 -48 7994 7719 2181 145 14 3 chr21 32931299 32931658 -1975912 + MLT2D LTR ERVL 1 363 -51 351 0 0 0 chr21 32931668 32931707 -1975863 + (CA)n Simple_repeat Simple_repeat 2 40 0 383 0 21 0 chr21 32931740 32931787 -1975783 + (TAGA)n Simple_repeat Simple_repeat 4 51 0 2242 111 0 0 chr21 32931787 32932094 -1975476 + AluSx SINE Alu 1 307 -5 2396 86 0 0 chr21 32932345 32932648 -1974922 - AluSg SINE Alu -7 303 1 2048 101 0 64 chr21 32932690 32933016 -1974554 - AluSc SINE Alu -4 305 1 2386 76 3 0 chr21 32935096 32935397 -1972173 + AluSp SINE Alu 1 302 -11 1243 153 11 27 chr21 32935822 32935946 -1971624 + L1MA4 LINE L1 5189 5314 -943 1909 142 0 35 chr21 32935946 32936262 -1971308 + AluJb SINE Alu 1 305 -7 1243 153 11 27 chr21 32936262 32936467 -1971103 + L1MA4 LINE L1 5314 5514 -743 2293 132 37 0 chr21 32936515 32936925 -1970645 + L1MA4 LINE L1 5598 6022 -278 22 0 0 0 chr21 32937007 32937029 -1970541 + AT_rich Low_complexity Low_complexity 1 22 0 2206 62 4 0 chr21 32938799 32939072 -1968498 + AluSp SINE Alu 37 310 -3 1199 245 69 29 chr21 32940491 32940838 -1966732 - MLT1A1 LTR MaLR -4 361 1 3100 250 72 69 chr21 32940850 32942192 -1965378 - MLT1A1-int LTR MaLR -15 1356 12 1516 208 12 9 chr21 32942234 32942561 -1965009 - MLT1A1 LTR MaLR -37 328 1 1526 271 73 30 chr21 32943100 32943769 -1963801 - MER21B LTR ERV1 -58 805 108 292 143 43 14 chr21 32943823 32943893 -1963677 - MER21B LTR ERV1 -684 179 108 237 180 0 49 chr21 32943880 32943941 -1963629 - MER21B LTR ERV1 -677 186 129 312 273 45 0 chr21 32946426 32946536 -1961034 - MLT1B LTR MaLR -114 391 277 400 244 89 0 chr21 32946601 32946736 -1960834 - MLT1B LTR MaLR -221 169 23 186 346 83 0 chr21 32946745 32946878 -1960692 - MIR3 SINE MIR -7 201 58 256 207 0 58 chr21 32947614 32947701 -1959869 + G-rich Low_complexity Low_complexity 3 84 0 190 349 54 8 chr21 32948314 32948443 -1959127 - L2 LINE L2 -192 3080 2946 261 329 74 34 chr21 32948665 32948963 -1958607 + L1MC/D LINE L1 5579 5888 -1920 207 265 0 0 chr21 32949846 32949895 -1957675 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 198 103 0 0 chr21 32950118 32950147 -1957423 + (TCTCCC)n Simple_repeat Simple_repeat 1 29 0 787 230 124 14 chr21 32950161 32950452 -1957118 + MLT1F LTR MaLR 209 531 -11 2540 137 68 7 chr21 32950735 32951144 -1956426 + MER61C LTR ERV1 1 434 0 641 224 14 20 chr21 32951144 32951291 -1956279 + MER61C-int LTR ERV1 2 147 -5070 919 131 21 76 chr21 32951525 32951762 -1955808 + MER61C-int LTR ERV1 336 559 -4658 2030 116 0 4 chr21 32951763 32952038 -1955532 + AluSq SINE Alu 1 274 -39 996 127 6 11 chr21 32952043 32952224 -1955346 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 762 148 7 13 chr21 32952224 32952379 -1955191 + GA-rich Low_complexity Low_complexity 1 154 0 1816 110 7 14 chr21 32952379 32952671 -1954899 + MER61C-int LTR ERV1 550 839 -4378 3682 98 40 7 chr21 32952671 32953276 -1954294 + MER61C-int LTR ERV1 957 1581 -3636 18400 105 25 12 chr21 32953267 32956321 -1951249 + MER61C-int LTR ERV1 2125 5216 -1 1545 150 94 3 chr21 32956337 32956657 -1950913 + MER61C LTR ERV1 85 433 -1 935 140 26 66 chr21 32956796 32956930 -1950640 - MER4D LTR ERV1 0 903 780 2135 121 0 0 chr21 32956930 32957228 -1950342 - AluSx SINE Alu -14 298 1 935 140 26 66 chr21 32957228 32957321 -1950249 - MER4D LTR ERV1 -123 780 685 603 81 10 20 chr21 32957325 32957424 -1950146 + MER61C LTR ERV1 1 98 -566 3721 103 6 16 chr21 32957424 32957940 -1949630 - MER9 LTR ERVK 0 511 1 1529 117 171 83 chr21 32957942 32958317 -1949253 + MER4A LTR ERV1 257 664 0 533 205 0 0 chr21 32958317 32958438 -1949132 - LTR39 LTR ERV1 -264 530 410 352 109 0 0 chr21 32958486 32958541 -1949029 - MER49 LTR ERV1 -633 290 236 686 132 19 0 chr21 32958555 32958661 -1948909 - FRAM SINE Alu -23 153 46 476 151 0 0 chr21 32958672 32958758 -1948812 - MER49 LTR ERV1 -837 86 1 300 240 47 8 chr21 32958814 32958943 -1948627 + Charlie2 DNA MER1_type 2366 2499 -363 540 258 67 6 chr21 32959223 32959401 -1948169 + MER5A DNA MER1_type 1 189 0 365 220 0 10 chr21 32963056 32963156 -1944414 + GA-rich Low_complexity Low_complexity 4 102 0 525 305 0 7 chr21 32963314 32963468 -1944102 + (TG)n Simple_repeat Simple_repeat 2 154 0 2510 47 0 0 chr21 32964669 32964967 -1942603 + AluY SINE Alu 1 298 -13 506 340 51 31 chr21 32965094 32965350 -1942220 + L1MEd LINE L1 618 878 -5327 482 179 14 3 chr21 32965427 32965537 -1942033 - MLT1D LTR MaLR -10 480 261 632 327 4 48 chr21 32965539 32965790 -1941780 + L1MEd LINE L1 1232 1471 -4925 294 64 0 0 chr21 32966011 32966058 -1941512 + Alu SINE Alu 256 302 0 1819 183 0 0 chr21 32966166 32966461 -1941109 + AluJb SINE Alu 1 295 -17 2912 94 26 0 chr21 32966715 32967141 -1940429 - LTR3b LTR ERVK 0 437 1 373 241 71 53 chr21 32968450 32968620 -1938950 + MLT1I LTR MaLR 235 407 -2 323 333 29 14 chr21 32970909 32971047 -1936523 + L1MEc LINE L1 210 349 -6047 524 347 60 13 chr21 32971824 32972210 -1935360 + L1MEc LINE L1 732 1135 -5070 270 276 0 0 chr21 32972212 32972299 -1935271 + (TG)n Simple_repeat Simple_repeat 1 87 0 268 286 92 0 chr21 32972556 32972675 -1934895 - MER20 DNA MER1_type -89 130 1 195 114 0 0 chr21 32973435 32973470 -1934100 + (CAGAGA)n Simple_repeat Simple_repeat 2 36 0 339 335 60 16 chr21 32975523 32975705 -1931865 - MIR SINE MIR -44 218 29 705 242 128 0 chr21 32978283 32978510 -1929060 + MER68 LTR ERV1 1 256 -306 572 248 58 12 chr21 32978536 32978778 -1928792 + MER68 LTR ERV1 303 555 -7 250 294 111 0 chr21 32978968 32979094 -1928476 - Charlie4a DNA MER1_type -103 405 266 2530 63 7 0 chr21 32979820 32980119 -1927451 - AluY SINE Alu -10 301 1 2164 128 0 0 chr21 32980861 32981158 -1926412 - AluY SINE Alu -14 297 1 266 306 60 6 chr21 32983375 32983558 -1924012 + L2 LINE L2 2851 3043 -229 27 0 0 0 chr21 32986728 32986755 -1920815 + AT_rich Low_complexity Low_complexity 1 27 0 2812 88 6 0 chr21 32986991 32987353 -1920217 + THE1B LTR MaLR 1 364 0 2422 100 0 0 chr21 32987967 32988278 -1919292 + AluSx SINE Alu 1 311 -1 24 0 0 0 chr21 32989383 32989407 -1918163 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr21 32990522 32990544 -1917026 + AT_rich Low_complexity Low_complexity 1 22 0 1073 217 56 9 chr21 32992725 32994312 -1913258 + L1MB7 LINE L1 4469 6174 -10 1823 164 0 3 chr21 32994314 32994606 -1912964 + AluJo SINE Alu 1 291 -21 268 186 14 14 chr21 32994608 32994678 -1912892 + GA-rich Low_complexity Low_complexity 4 73 0 304 325 73 8 chr21 32994707 32994830 -1912740 - L1MC4a LINE L1 -1909 5899 5769 2363 112 0 0 chr21 32997251 32997564 -1910006 + AluSq SINE Alu 1 313 0 2622 62 3 0 chr21 32998721 32999029 -1908541 - AluY SINE Alu -2 309 1 331 105 18 18 chr21 32999155 32999212 -1908358 - AluJ/FRAM SINE Alu -16 286 230 463 287 75 33 chr21 32999472 32999544 -1908026 + L1ME LINE L1 4640 4708 -1438 2604 71 0 0 chr21 32999544 32999854 -1907716 + AluSx SINE Alu 1 310 -2 463 287 75 33 chr21 32999854 33000116 -1907454 + L1ME LINE L1 4708 4988 -1158 1591 162 147 6 chr21 33000180 33000500 -1907070 + MLT1A1 LTR MaLR 1 365 0 1109 195 107 77 chr21 33000500 33000875 -1906695 + L1ME LINE L1 5364 5749 -417 1942 131 81 39 chr21 33000875 33001235 -1906335 + THE1C LTR MaLR 1 375 0 6934 107 29 29 chr21 33001235 33002754 -1904816 + THE1C-int LTR MaLR 1 1580 0 1849 159 58 22 chr21 33002755 33003114 -1904456 + THE1C LTR MaLR 1 372 -3 219 282 168 13 chr21 33003291 33003440 -1904130 - L2 LINE L2 -1231 2083 1912 636 247 61 32 chr21 33004150 33004399 -1903171 + L1MC/D LINE L1 5562 5816 -368 738 140 66 14 chr21 33004476 33004711 -1902859 + MLT1B LTR MaLR 86 383 -7 642 234 48 56 chr21 33004714 33004966 -1902604 + L1ME LINE L1 4914 5163 -983 2548 65 3 0 chr21 33004968 33005274 -1902296 - AluY SINE Alu -4 307 1 535 200 123 121 chr21 33005274 33005427 -1902143 + L1ME LINE L1 5272 5423 -743 2013 125 33 3 chr21 33005427 33005730 -1901840 + AluSx SINE Alu 1 312 0 535 200 123 121 chr21 33005730 33005795 -1901775 + L1ME LINE L1 5423 5486 -680 1911 185 0 0 chr21 33005795 33006103 -1901467 + AluJb SINE Alu 5 312 0 535 200 123 121 chr21 33006103 33006298 -1901272 + L1ME LINE L1 5486 5687 -479 784 220 16 65 chr21 33006304 33006549 -1901021 + MLT1C LTR MaLR 193 425 -42 311 303 45 26 chr21 33006651 33006806 -1900764 + MIR3 SINE MIR 50 207 -1 681 231 62 63 chr21 33007053 33007512 -1900058 - MLT1E1 LTR MaLR 0 654 147 2663 42 3 0 chr21 33007876 33008183 -1899387 + AluY SINE Alu 1 308 -3 287 138 35 17 chr21 33008367 33008425 -1899145 + MER65B LTR ERV1 1 59 -472 977 194 17 6 chr21 33008438 33008618 -1898952 + AluJb SINE Alu 122 303 -9 10898 127 77 17 chr21 33008645 33010707 -1896863 - Tigger1 DNA MER2_type -195 2223 2 1071 189 19 0 chr21 33010868 33011074 -1896496 - MER2 DNA MER2_type -134 210 1 266 236 173 24 chr21 33011325 33011452 -1896118 - MIR3 SINE MIR -48 160 15 325 303 130 38 chr21 33013335 33013758 -1893812 + L2 LINE L2 2851 3312 -1 267 173 0 19 chr21 33014362 33014414 -1893156 + MER53 DNA DNA 139 189 0 593 196 0 0 chr21 33014929 33015026 -1892544 + FLAM_A SINE Alu 1 97 -45 1014 96 128 0 chr21 33015054 33015210 -1892360 + MSTA LTR MaLR 253 428 0 2351 82 0 10 chr21 33018672 33018966 -1888604 + AluY SINE Alu 1 291 -20 21 71 0 0 chr21 33019323 33019365 -1888205 + AT_rich Low_complexity Low_complexity 1 42 0 349 172 162 0 chr21 33020615 33020714 -1886856 + HAL1 LINE L1 21 135 -2372 849 187 0 0 chr21 33021339 33021624 -1885946 + (CA)n Simple_repeat Simple_repeat 1 285 0 1978 139 7 0 chr21 33021737 33022024 -1885546 + AluJo SINE Alu 5 293 -19 836 247 107 71 chr21 33022037 33022495 -1885075 + HAL1 LINE L1 1032 1527 -980 1891 133 6 71 chr21 33022495 33022819 -1884751 - AluJo SINE Alu -7 305 3 836 247 107 71 chr21 33022819 33023068 -1884502 + HAL1 LINE L1 1527 1765 -742 342 244 96 0 chr21 33023882 33023997 -1883573 + L1MC5 LINE L1 6991 7116 -845 753 157 9 0 chr21 33024862 33024977 -1882593 + FLAM_C SINE Alu 2 117 -26 301 163 0 71 chr21 33028250 33028348 -1879222 + (CGGGG)n Simple_repeat Simple_repeat 4 94 0 24 67 0 0 chr21 33028585 33028630 -1878940 + GC_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr21 33028924 33028960 -1878610 + GC_rich Low_complexity Low_complexity 1 36 0 274 228 120 0 chr21 33029100 33029192 -1878378 - MIR SINE MIR -118 144 42 2079 116 24 0 chr21 33030673 33030966 -1876604 + AluSg SINE Alu 1 300 -10 2072 144 0 3 chr21 33031100 33031406 -1876164 + AluSx SINE Alu 1 305 -7 1124 230 33 83 chr21 33031740 33031776 -1875794 - MLT1B LTR MaLR -7 383 347 2280 89 3 0 chr21 33031776 33032078 -1875492 + AluSp SINE Alu 1 303 -10 1124 230 33 83 chr21 33032078 33032437 -1875133 - MLT1B LTR MaLR -43 347 8 934 316 78 81 chr21 33032619 33033123 -1874447 + L1MEc LINE L1 660 1164 -5051 1472 118 135 13 chr21 33033123 33033360 -1874210 + AluSg SINE Alu 24 289 -21 934 316 78 81 chr21 33033360 33033679 -1873891 + L1MEc LINE L1 1164 1635 -4580 3451 99 2 4 chr21 33033679 33034145 -1873425 + MER4C LTR ERV1 1 465 0 934 316 78 81 chr21 33034145 33034291 -1873279 + L1MEc LINE L1 1635 1780 -4435 5711 61 26 60 chr21 33034490 33035387 -1872183 + SVA Other Other 1 866 -520 6551 57 35 33 chr21 33035441 33036415 -1871155 + SVA Other Other 432 1407 0 1669 113 0 0 chr21 33037075 33037305 -1870265 + AluSq SINE Alu 84 313 0 276 154 19 0 chr21 33037488 33037540 -1870030 - MIR SINE MIR -94 168 116 405 360 76 51 chr21 33037570 33037926 -1869644 + L1MCb LINE L1 382 746 -5676 898 231 100 21 chr21 33038421 33038711 -1868859 + L1MCb LINE L1 1128 1440 -4983 246 321 81 52 chr21 33038811 33039394 -1868176 + L1MCb LINE L1 1582 2181 -4760 357 339 78 42 chr21 33040051 33040461 -1867109 + L1ME LINE L1 320 744 -5326 2654 101 77 33 chr21 33040504 33041049 -1866521 - MER51A LTR ERV1 0 634 129 252 0 0 0 chr21 33041049 33041077 -1866493 + (TGGGGG)n Simple_repeat Simple_repeat 3 30 0 2654 101 77 33 chr21 33041077 33041212 -1866358 - MER51A LTR ERV1 -505 129 1 927 133 0 7 chr21 33041213 33041356 -1866214 - FRAM SINE Alu -34 142 1 1401 271 85 23 chr21 33041404 33042156 -1865414 + L1ME LINE L1 800 1598 -4482 303 206 15 0 chr21 33042229 33042297 -1865273 - MER58 DNA MER1_type 0 2420 2352 844 116 0 16 chr21 33042340 33042469 -1865101 + AluJo/FLAM SINE Alu 1 127 -185 2193 107 0 3 chr21 33042472 33042772 -1864798 - AluSg SINE Alu -11 299 1 21 0 0 0 chr21 33042775 33042796 -1864774 + AT_rich Low_complexity Low_complexity 1 21 0 4279 181 53 45 chr21 33042810 33043757 -1863813 + LTR13 LTR ERVK 1 954 0 2279 31 3 31 chr21 33043789 33044078 -1863492 - AluY SINE Alu -30 281 1 31 0 0 0 chr21 33044121 33044152 -1863418 + AT_rich Low_complexity Low_complexity 1 31 0 725 250 47 84 chr21 33044322 33044666 -1862904 + L1M4 LINE L1 4573 4903 -1243 502 300 106 0 chr21 33045177 33045337 -1862233 + MER5A DNA MER1_type 6 182 -7 409 257 122 0 chr21 33045491 33045639 -1861931 - MER5B DNA MER1_type -4 174 9 513 53 0 140 chr21 33046414 33046621 -1860949 + (CACCC)n Simple_repeat Simple_repeat 3 180 0 620 14 0 163 chr21 33046651 33046866 -1860704 + (CACCC)n Simple_repeat Simple_repeat 1 180 0 486 274 40 0 chr21 33047169 33047344 -1860226 + MLT1B LTR MaLR 202 383 -7 228 202 0 45 chr21 33047943 33048032 -1859538 + GA-rich Low_complexity Low_complexity 3 87 0 233 310 10 0 chr21 33048528 33048628 -1858942 + (CCCCG)n Simple_repeat Simple_repeat 4 104 0 418 277 173 41 chr21 33049383 33049654 -1857916 - MLT1H LTR MaLR -89 460 154 1646 146 77 17 chr21 33049870 33050157 -1857413 + AluJo SINE Alu 1 304 -8 2369 72 3 3 chr21 33050164 33050470 -1857100 + AluY SINE Alu 1 306 -5 576 192 8 48 chr21 33050729 33050854 -1856716 + FLAM_A SINE Alu 12 131 -11 730 218 56 5 chr21 33050938 33051135 -1856435 - MLT2B1 LTR ERVL -312 208 2 1139 272 88 0 chr21 33052128 33052448 -1855122 - MER7A DNA MER2_type 0 346 1 856 161 0 0 chr21 33052837 33052967 -1854603 - FLAM_C SINE Alu -8 135 6 334 219 42 10 chr21 33053898 33053994 -1853576 + MLT1A2 LTR MaLR 1 99 -275 207 179 0 0 chr21 33054019 33054058 -1853512 + (TCTCTG)n Simple_repeat Simple_repeat 5 43 0 180 125 0 0 chr21 33054120 33054152 -1853418 + (TCTCTG)n Simple_repeat Simple_repeat 6 37 0 183 80 0 0 chr21 33054189 33054214 -1853356 + (TC)n Simple_repeat Simple_repeat 1 25 0 279 283 28 0 chr21 33054287 33054393 -1853177 + MLT1A2 LTR MaLR 282 390 0 2461 48 3 19 chr21 33054405 33054721 -1852849 + AluY SINE Alu 1 311 0 2972 158 99 2 chr21 33055164 33055419 -1852151 - MER41C LTR ERV1 0 554 325 2358 87 0 6 chr21 33055419 33055730 -1851840 - AluSx SINE Alu -3 309 1 2972 158 99 2 chr21 33055730 33055979 -1851591 - MER41C LTR ERV1 -229 325 1 374 235 20 69 chr21 33058175 33058277 -1849293 + L1MC/D LINE L1 5557 5653 -2155 2292 100 0 0 chr21 33058488 33058788 -1848782 - AluSx SINE Alu -12 300 1 2083 95 7 7 chr21 33058922 33059216 -1848354 - AluSq SINE Alu -19 294 1 2198 110 7 0 chr21 33062621 33062922 -1844648 - AluSq SINE Alu -10 303 1 222 118 0 0 chr21 33063597 33063631 -1843939 + (TG)n Simple_repeat Simple_repeat 2 35 0 2417 76 0 3 chr21 33063667 33063970 -1843600 + AluY SINE Alu 1 302 -9 1509 195 3 36 chr21 33067636 33067943 -1839627 + AluJb SINE Alu 1 297 -15 724 195 61 61 chr21 33068748 33068994 -1838576 + LTR53 LTR ERVL 1 246 -273 730 280 40 15 chr21 33069167 33069454 -1838116 + L1ME LINE L1 5344 5640 -522 2084 66 0 4 chr21 33070528 33070786 -1836784 + AluY SINE Alu 1 257 -54 207 0 0 0 chr21 33070792 33070815 -1836755 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2302 75 7 0 chr21 33071251 33071543 -1836027 - AluSc SINE Alu -15 294 1 238 288 0 0 chr21 33072240 33072306 -1835264 + L2 LINE L2 3202 3267 -5 2271 87 7 0 chr21 33072680 33072980 -1834590 + AluSp SINE Alu 1 302 -11 2191 101 7 7 chr21 33074830 33075138 -1832432 - AluSq SINE Alu -5 308 1 207 0 0 0 chr21 33076651 33076674 -1830896 + (CA)n Simple_repeat Simple_repeat 2 24 0 215 245 20 20 chr21 33076695 33076797 -1830773 + (CA)n Simple_repeat Simple_repeat 2 103 0 225 0 0 0 chr21 33076816 33076841 -1830729 + (CA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr21 33076865 33076888 -1830682 + (CA)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chr21 33076913 33076936 -1830634 + (CA)n Simple_repeat Simple_repeat 2 24 0 261 132 26 13 chr21 33077077 33077153 -1830417 + (CA)n Simple_repeat Simple_repeat 2 78 0 1164 217 38 23 chr21 33077161 33077555 -1830015 + L1ME2 LINE L1 5384 5700 -464 504 274 65 0 chr21 33077688 33077874 -1829696 + L1ME2 LINE L1 5798 5995 -169 1977 242 155 54 chr21 33078780 33079870 -1827700 + L1MC4 LINE L1 6705 7904 -138 834 179 0 0 chr21 33079906 33080040 -1827530 - AluJo SINE Alu -178 134 1 26 74 0 0 chr21 33080045 33080099 -1827471 + AT_rich Low_complexity Low_complexity 1 54 0 2146 95 51 0 chr21 33080700 33080994 -1826576 + AluSx SINE Alu 1 309 -3 192 274 48 0 chr21 33082978 33083040 -1824530 + L2 LINE L2 2677 2741 -573 27 49 0 0 chr21 33083898 33083939 -1823631 + GC_rich Low_complexity Low_complexity 1 41 0 216 177 0 133 chr21 33084332 33084445 -1823125 + (CGAGG)n Simple_repeat Simple_repeat 5 102 0 402 224 40 8 chr21 33085284 33085409 -1822161 + LTR24B LTR ERV1 438 566 -10 849 255 57 38 chr21 33085555 33085927 -1821643 + LTR24B-int LTR ERV1 308 686 -4437 2301 92 0 0 chr21 33086577 33086870 -1820700 - AluSg SINE Alu -17 293 1 2101 126 10 0 chr21 33087560 33087862 -1819708 - AluSp SINE Alu -8 305 1 4094 96 50 21 chr21 33088381 33088996 -1818574 - LTR10E LTR ERV1 0 633 1 251 185 86 0 chr21 33089701 33089782 -1817788 + PRIMA41-int LTR ERV1 4993 5080 -1721 2190 105 7 0 chr21 33089857 33090151 -1817419 + AluSx SINE Alu 1 296 -16 302 296 19 0 chr21 33090467 33090575 -1816995 + PRIMA41-int LTR ERV1 7189 7298 -458 1869 132 31 0 chr21 33090887 33091174 -1816396 + AluSx SINE Alu 1 296 -16 233 356 11 11 chr21 33092438 33092525 -1815045 - MIR SINE MIR -161 101 15 1343 205 55 93 chr21 33092741 33093283 -1814287 - LTR26E LTR ERV1 -13 609 1 2196 95 0 14 chr21 33093433 33093727 -1813843 - AluSc SINE Alu -19 290 1 619 243 58 0 chr21 33093765 33093938 -1813632 - MER5A DNA MER1_type -1 188 6 1218 162 27 9 chr21 33094209 33094431 -1813139 - AluJo SINE Alu -2 310 85 601 154 0 0 chr21 33094496 33094587 -1812983 - AluJo SINE Alu -221 91 1 270 253 13 38 chr21 33094667 33094746 -1812824 + MER81 DNA DNA 2 78 -36 2120 93 52 0 chr21 33102779 33103069 -1804501 + AluSx SINE Alu 1 305 -7 195 114 0 0 chr21 33103175 33103210 -1804360 + (A)n Simple_repeat Simple_repeat 1 35 0 479 135 41 35 chr21 33104321 33104491 -1803079 + (CAGAGA)n Simple_repeat Simple_repeat 2 172 0 1819 145 3 0 chr21 33105707 33105997 -1801573 + AluJo SINE Alu 18 308 -4 2086 113 33 0 chr21 33106001 33106364 -1801206 + AluSq SINE Alu 1 373 0 253 290 131 0 chr21 33106576 33106683 -1800887 + MER63 DNA MER1_type 706 826 -235 222 247 135 11 chr21 33108013 33108102 -1799468 - MIR SINE MIR -103 159 60 1641 217 90 65 chr21 33108373 33108953 -1798617 + MER77 LTR ERV1 5 598 -7 362 353 0 22 chr21 33112312 33112580 -1794990 + (TG)n Simple_repeat Simple_repeat 1 262 0 447 355 0 14 chr21 33112688 33113071 -1794499 + (TG)n Simple_repeat Simple_repeat 1 377 0 489 319 0 16 chr21 33113083 33113265 -1794305 + (TG)n Simple_repeat Simple_repeat 2 180 0 212 347 14 0 chr21 33114517 33114589 -1792981 + L2 LINE L2 3200 3272 0 559 208 30 14 chr21 33114736 33115233 -1792337 + (CA)n Simple_repeat Simple_repeat 1 505 0 324 153 35 0 chr21 33115248 33115333 -1792237 + (CA)n Simple_repeat Simple_repeat 2 89 0 210 188 30 36 chr21 33115929 33116012 -1791558 + MIR SINE MIR 63 146 -62 273 88 70 0 chr21 33116569 33116626 -1790944 + CT-rich Low_complexity Low_complexity 1 61 0 817 169 0 0 chr21 33116626 33116756 -1790814 - AluSx SINE Alu -2 308 179 772 44 0 0 chr21 33116762 33116853 -1790717 - AluSx SINE Alu -213 100 10 363 209 23 0 chr21 33116933 33117019 -1790551 + MER103 DNA DNA 8 95 -71 1657 214 43 13 chr21 33118751 33118842 -1788728 + LTR2 LTR ERV1 41 128 -321 207 0 0 0 chr21 33118842 33118865 -1788705 + (TTA)n Simple_repeat Simple_repeat 1 23 0 1657 214 43 13 chr21 33118865 33119170 -1788400 + LTR2 LTR ERV1 128 449 0 391 260 27 20 chr21 33119197 33119343 -1788227 + L1MC4 LINE L1 6807 6953 -1089 539 272 83 7 chr21 33119638 33119914 -1787656 + L1MC4 LINE L1 7334 7630 -412 277 258 22 11 chr21 33120112 33120201 -1787369 + L1MC4 LINE L1 7696 7785 -257 384 329 30 6 chr21 33121488 33121655 -1785915 + (CA)n Simple_repeat Simple_repeat 1 171 0 398 175 35 0 chr21 33121688 33121802 -1785768 + (CA)n Simple_repeat Simple_repeat 2 119 0 1701 173 0 32 chr21 33125092 33125404 -1782166 + AluJb SINE Alu 11 312 0 2152 95 10 3 chr21 33125469 33125765 -1781805 - AluY SINE Alu -13 298 1 2171 93 0 0 chr21 33126359 33126662 -1780908 - AluSg SINE Alu 0 303 1 2330 80 7 0 chr21 33127027 33127328 -1780242 + AluSq SINE Alu 1 303 -10 344 328 0 55 chr21 33127444 33127572 -1779998 + L1ME4a LINE L1 5266 5386 -776 374 287 107 40 chr21 33127742 33127892 -1779678 + L1ME4a LINE L1 5956 6115 -6 237 288 18 0 chr21 33128934 33129004 -1778566 - MIR SINE MIR -45 163 92 255 127 9 100 chr21 33130682 33130792 -1776778 + (CACAC)n Simple_repeat Simple_repeat 1 100 0 222 118 0 0 chr21 33132024 33132058 -1775512 + (GGA)n Simple_repeat Simple_repeat 2 35 0 2143 114 0 16 chr21 33132149 33132465 -1775105 - AluSq SINE Alu -2 311 1 1583 154 51 38 chr21 33132826 33133119 -1774451 + AluJb SINE Alu 5 301 -11 315 364 0 33 chr21 33133133 33133254 -1774316 + L1M2 LINE L1 2756 2872 -3977 319 278 90 72 chr21 33133334 33133669 -1773901 + L1MC5 LINE L1 7103 7443 -518 644 259 17 66 chr21 33133760 33134061 -1773509 + L1MC5 LINE L1 7640 7925 -36 836 206 22 0 chr21 33134071 33134251 -1773319 + L1MB3 LINE L1 5998 6181 -2 301 299 61 88 chr21 33134350 33134589 -1772981 + L1M2 LINE L1 3043 3276 -3572 2131 134 0 3 chr21 33134589 33134902 -1772668 + AluSx SINE Alu 1 312 0 301 299 61 88 chr21 33134902 33134923 -1772647 + L1M2 LINE L1 3276 3296 -3552 389 200 33 0 chr21 33135606 33135696 -1771874 + L1MB7 LINE L1 6005 6097 -87 476 239 0 0 chr21 33135759 33135851 -1771719 + AluJb SINE Alu 213 304 -8 585 42 0 0 chr21 33135852 33135924 -1771646 + (GGAA)n Simple_repeat Simple_repeat 1 72 0 609 239 24 81 chr21 33135939 33136236 -1771334 + L1MDb LINE L1 802 1081 -5328 2213 74 0 80 chr21 33136238 33136575 -1770995 + AluY SINE Alu 1 310 -1 21 0 0 0 chr21 33136575 33136596 -1770974 + AT_rich Low_complexity Low_complexity 1 21 0 321 346 47 16 chr21 33138745 33138872 -1768698 + HAL1 LINE L1 2006 2136 -371 285 29 0 0 chr21 33139048 33139082 -1768488 + (TCGGG)n Simple_repeat Simple_repeat 5 38 0 810 237 32 0 chr21 33139976 33140162 -1767408 - MER58A DNA MER1_type -31 193 2 263 200 0 0 chr21 33141408 33141468 -1766102 + L1ME4a LINE L1 6058 6117 -4 273 185 37 0 chr21 33142721 33142775 -1764795 - MIR SINE MIR -116 146 91 24 32 0 0 chr21 33143006 33143037 -1764533 + GC_rich Low_complexity Low_complexity 1 31 0 403 299 30 0 chr21 33144402 33144536 -1763034 - MER5A DNA MER1_type -20 169 32 224 320 86 55 chr21 33144869 33144997 -1762573 - L2 LINE L2 -206 3066 2935 2470 74 0 0 chr21 33146366 33146677 -1760893 - AluY SINE Alu 0 311 1 577 291 48 22 chr21 33147165 33147436 -1760134 + MER34 LTR ERV1 33 310 -232 711 202 44 0 chr21 33147470 33147628 -1759942 + MER34 LTR ERV1 378 542 0 1542 178 18 22 chr21 33147678 33147953 -1759617 + AluJo SINE Alu 9 282 -30 22 0 0 0 chr21 33147953 33147975 -1759595 + AT_rich Low_complexity Low_complexity 1 22 0 1845 194 44 21 chr21 33148102 33148489 -1759081 - MSTD LTR MaLR 0 396 1 2242 95 3 0 chr21 33148544 33148838 -1758732 - AluSp SINE Alu -18 295 1 437 81 32 0 chr21 33148972 33149034 -1758536 + Alu SINE Alu 231 294 -17 1636 149 3 17 chr21 33149861 33150150 -1757420 + AluJo SINE Alu 1 285 -27 29 78 0 0 chr21 33150561 33150625 -1756945 + GC_rich Low_complexity Low_complexity 1 64 0 483 219 101 25 chr21 33150984 33151103 -1756467 - L1MB8 LINE L1 -140 6038 5911 1151 257 110 36 chr21 33151105 33151786 -1755784 - L1M4 LINE L1 -4834 2021 1333 403 341 45 0 chr21 33152256 33152479 -1755091 - L1M4 LINE L1 -6025 834 602 1719 255 110 4 chr21 33152994 33153484 -1754086 - MER34 LTR ERV1 0 542 1 431 300 43 29 chr21 33155232 33155407 -1752163 + MIR SINE MIR 45 222 -21 1909 93 0 80 chr21 33156128 33156475 -1751095 - AluSc SINE Alu 0 309 1 1078 164 22 22 chr21 33159144 33159369 -1748201 - MER52A LTR ERV1 0 1755 1531 680 236 58 0 chr21 33159440 33159614 -1747956 - MER52A LTR ERV1 -1220 535 352 430 328 62 23 chr21 33164302 33164479 -1743091 - L1M4 LINE L1 -1844 4302 4119 2054 119 26 7 chr21 33165373 33165675 -1741895 + AluSx SINE Alu 1 308 -4 852 188 0 24 chr21 33165960 33166125 -1741445 - AluJb SINE Alu -15 297 137 427 315 68 71 chr21 33171601 33171748 -1735822 - L1M4 LINE L1 -2608 3538 3392 1593 188 0 28 chr21 33171748 33172035 -1735535 + AluJo SINE Alu 11 289 -23 427 315 68 71 chr21 33172035 33172399 -1735171 - L1M4 LINE L1 -2754 3392 2931 2727 227 92 17 chr21 33172608 33172770 -1734800 - L1ME2 LINE L1 -1 6163 5195 2379 220 98 11 chr21 33172780 33173525 -1734045 - L1ME2 LINE L1 -173 5991 5185 2141 87 3 7 chr21 33173525 33173814 -1733756 - AluSc SINE Alu -6 303 16 2379 220 98 11 chr21 33173814 33173870 -1733700 - L1ME2 LINE L1 -979 5185 5135 198 103 0 0 chr21 33173879 33173908 -1733662 + (TG)n Simple_repeat Simple_repeat 2 30 0 2105 236 46 27 chr21 33173910 33174805 -1732765 - L1ME2 LINE L1 -1048 5098 4171 553 386 59 15 chr21 33175852 33176256 -1731314 - L1ME2 LINE L1 -2050 4096 3675 2426 63 0 0 chr21 33179195 33179494 -1728076 - AluY SINE Alu -12 299 1 217 146 91 18 chr21 33179762 33179817 -1727753 + MIR SINE MIR 84 142 -120 1272 234 81 52 chr21 33180030 33180509 -1727061 - L1MC3 LINE L1 -19 7766 7274 574 251 60 26 chr21 33180728 33180995 -1726575 - L1MC3 LINE L1 -805 6980 6703 821 138 0 50 chr21 33184987 33185146 -1722424 - AluJb SINE Alu 0 312 162 527 160 0 88 chr21 33188888 33189279 -1718291 + (CGGGG)n Simple_repeat Simple_repeat 1 356 0 1669 159 30 3 chr21 33189396 33189691 -1717879 + AluJb SINE Alu 1 303 -9 360 174 14 0 chr21 33191335 33191404 -1716166 - MLT1C LTR MaLR -297 170 101 223 279 77 29 chr21 33194049 33194153 -1713417 - MIR SINE MIR -76 132 24 413 201 30 12 chr21 33194474 33194810 -1712760 + (CA)n Simple_repeat Simple_repeat 1 342 0 278 294 35 71 chr21 33196820 33196990 -1710580 + MIR3 SINE MIR 41 204 -4 588 250 0 0 chr21 33198803 33198979 -1708591 + (TG)n Simple_repeat Simple_repeat 1 176 0 206 294 101 25 chr21 33200685 33200804 -1706766 + MIR SINE MIR 16 143 -119 216 143 0 0 chr21 33202970 33203012 -1704558 + (TG)n Simple_repeat Simple_repeat 1 42 0 308 209 12 0 chr21 33204920 33205006 -1702564 + (TG)n Simple_repeat Simple_repeat 2 88 0 274 196 18 0 chr21 33210350 33210406 -1697164 - MER63 DNA MER1_type -320 741 685 417 265 43 0 chr21 33211217 33211334 -1696236 + L1MC4 LINE L1 5846 5967 -2075 294 254 36 7 chr21 33212502 33212640 -1694930 + (CTGGGG)n Simple_repeat Simple_repeat 1 142 0 184 217 22 0 chr21 33212675 33212767 -1694803 + (CTGGGG)n Simple_repeat Simple_repeat 1 94 0 224 208 267 20 chr21 33214215 33214316 -1693254 + MIR3 SINE MIR 31 156 -52 345 298 144 33 chr21 33214857 33215038 -1692532 - L1MB8 LINE L1 -1 6177 5977 799 303 20 40 chr21 33215047 33215372 -1692198 - L1MB8 LINE L1 -246 5938 5619 2078 196 52 0 chr21 33215372 33215776 -1691794 + MSTB LTR MaLR 1 425 -1 799 303 20 40 chr21 33215776 33215797 -1691773 - L1MB8 LINE L1 -565 5619 5599 348 317 61 0 chr21 33215816 33215980 -1691590 - L1M4c LINE L1 -4536 2110 1937 279 211 35 18 chr21 33215993 33216107 -1691463 + (TA)n Simple_repeat Simple_repeat 2 117 0 5031 208 67 28 chr21 33216119 33217721 -1689849 - L1M4c LINE L1 -4701 1945 278 577 190 17 0 chr21 33217753 33217869 -1689701 - L1M4c LINE L1 -6411 131 14 851 224 58 96 chr21 33217889 33218170 -1689400 - L1ME2 LINE L1 -1 6163 5902 213 39 0 0 chr21 33218170 33218196 -1689374 + (TTG)n Simple_repeat Simple_repeat 2 27 0 851 224 58 96 chr21 33218196 33218329 -1689241 - L1ME2 LINE L1 -262 5902 5765 1737 225 56 40 chr21 33218319 33218594 -1688976 - L1ME1 LINE L1 -299 5936 5667 2469 47 7 3 chr21 33218594 33218895 -1688675 - AluY SINE Alu -9 302 1 1737 225 56 40 chr21 33218895 33219002 -1688568 - L1ME1 LINE L1 -568 5667 5563 1437 222 38 62 chr21 33219002 33219402 -1688168 - MLT1B LTR MaLR 0 390 1 1737 225 56 40 chr21 33219402 33220061 -1687509 - L1ME1 LINE L1 -672 5563 4882 3471 266 38 24 chr21 33220064 33221341 -1686229 - L1ME1 LINE L1 -1374 4841 3548 942 270 46 13 chr21 33221337 33221741 -1685829 - L1ME1 LINE L1 -5954 442 23 247 192 58 67 chr21 33221735 33221839 -1685731 - L1ME4a LINE L1 0 6121 6019 318 260 116 1 chr21 33222892 33223029 -1684541 - MLT1D LTR MaLR -352 153 1 2604 152 18 32 chr21 33224005 33224372 -1683198 - MER41E LTR ERV1 0 512 152 2287 97 3 0 chr21 33224372 33224672 -1682898 - AluSx SINE Alu -11 301 1 2604 152 18 32 chr21 33224672 33224811 -1682759 - MER41E LTR ERV1 -360 152 13 215 213 0 21 chr21 33225854 33225901 -1681669 + G-rich Low_complexity Low_complexity 2 47 0 372 347 32 0 chr21 33227482 33227606 -1679964 - L1ME4a LINE L1 -2 6119 5992 243 200 18 0 chr21 33227733 33227788 -1679782 - L1M3 LINE L1 -583 5751 5696 1659 216 79 23 chr21 33228171 33228652 -1678918 + L1MB3 LINE L1 5330 5837 -346 203 218 58 46 chr21 33228857 33228944 -1678626 + G-rich Low_complexity Low_complexity 1 88 0 237 219 14 27 chr21 33229330 33229403 -1678167 + (CCCCAG)n Simple_repeat Simple_repeat 3 74 0 28 71 0 0 chr21 33229433 33229489 -1678081 + GC_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr21 33229578 33229612 -1677958 + GC_rich Low_complexity Low_complexity 1 34 0 318 293 121 20 chr21 33231093 33231192 -1676378 + L1M LINE L1 5316 5424 -697 1872 162 7 0 chr21 33233589 33233897 -1673673 + AluJb SINE Alu 1 310 -2 332 230 6 61 chr21 33233924 33234089 -1673481 + L1MEd LINE L1 918 1073 -5046 201 267 0 0 chr21 33234358 33234403 -1673167 + GA-rich Low_complexity Low_complexity 2 46 0 2219 112 0 6 chr21 33234426 33234738 -1672832 + AluSx SINE Alu 1 310 -2 3399 109 13 6 chr21 33234810 33236008 -1671562 - L1PA11 LINE L1 0 6174 4883 2331 85 0 0 chr21 33239400 33239695 -1667875 + AluSq SINE Alu 6 300 -13 413 220 46 0 chr21 33239695 33239804 -1667766 - MLT1D LTR MaLR -391 114 1 814 202 62 29 chr21 33242573 33242815 -1664755 + MER65A LTR ERV1 2 251 -194 210 147 0 0 chr21 33244137 33244171 -1663399 + (TC)n Simple_repeat Simple_repeat 1 34 0 588 143 0 0 chr21 33244950 33245048 -1662522 + (TCCTG)n Simple_repeat Simple_repeat 1 98 0 283 310 69 17 chr21 33245102 33245334 -1662236 - L2 LINE L2 -666 2648 2405 804 345 19 59 chr21 33246404 33246766 -1660804 + HAL1 LINE L1 949 1297 -1210 951 195 0 0 chr21 33246766 33246930 -1660640 + FRAM SINE Alu 2 165 -1 410 270 65 14 chr21 33246943 33247158 -1660412 + HAL1 LINE L1 1283 1508 -999 486 329 14 5 chr21 33247173 33247386 -1660184 + HAL1 LINE L1 1458 1672 -835 258 136 0 0 chr21 33247400 33247444 -1660126 - Alu SINE Alu -11 291 248 29 0 0 0 chr21 33248123 33248152 -1659418 + AT_rich Low_complexity Low_complexity 1 29 0 721 154 0 0 chr21 33248178 33248288 -1659282 - FLAM_C SINE Alu -33 110 1 2253 83 30 0 chr21 33248854 33249156 -1658414 + AluY SINE Alu 1 311 0 2043 128 0 3 chr21 33249432 33249730 -1657840 + AluSx SINE Alu 1 297 -15 1030 178 6 0 chr21 33249739 33249908 -1657662 + AluJb SINE Alu 140 309 -3 21 57 0 0 chr21 33250151 33250186 -1657384 + AT_rich Low_complexity Low_complexity 1 35 0 747 126 34 34 chr21 33252420 33252931 -1654639 + (TG)n Simple_repeat Simple_repeat 1 511 0 785 27 33 54 chr21 33252977 33253161 -1654409 + (TG)n Simple_repeat Simple_repeat 1 180 0 448 253 21 59 chr21 33253683 33253869 -1653701 + L1MC4 LINE L1 7864 8042 0 680 249 19 5 chr21 33255028 33255237 -1652333 + L1ME2 LINE L1 5885 6096 -68 5540 183 38 7 chr21 33255252 33256347 -1651223 + L1MC1 LINE L1 4697 5862 -471 2107 194 0 5 chr21 33256347 33256714 -1650856 - MLT1A1 LTR MaLR 0 365 1 5540 183 38 7 chr21 33256714 33257202 -1650368 + L1MC1 LINE L1 5862 6333 0 2014 141 7 0 chr21 33257314 33257613 -1649957 + AluSx SINE Alu 3 303 -9 406 336 62 10 chr21 33257801 33258009 -1649561 + HAL1 LINE L1 1458 1676 -831 2183 108 0 3 chr21 33258221 33258518 -1649052 + AluSq SINE Alu 1 296 -17 232 261 78 17 chr21 33260266 33260381 -1647189 + MLT1J1 LTR MaLR 38 159 -287 247 281 85 24 chr21 33261430 33261594 -1645976 - L1ME LINE L1 -235 5886 5713 302 338 64 59 chr21 33261760 33261979 -1645591 - L1ME LINE L1 -2330 5478 5259 377 326 51 20 chr21 33262209 33262405 -1645165 + MIR SINE MIR 51 252 -10 1964 132 14 0 chr21 33262929 33263216 -1644354 + AluJo SINE Alu 3 293 -19 848 192 36 7 chr21 33263269 33263476 -1644094 - MLT2B1 LTR ERVL -198 216 1 494 262 50 33 chr21 33264970 33265210 -1642360 + L1MEc LINE L1 29 272 -6124 2162 40 0 0 chr21 33266022 33266275 -1641295 + L1PA4 LINE L1 5903 6155 0 424 183 26 17 chr21 33267315 33267430 -1640140 - HAL1b LINE L1 -248 1100 985 641 296 51 32 chr21 33267839 33267977 -1639593 + L1MC/D LINE L1 5118 5252 -966 2303 97 0 31 chr21 33267977 33268298 -1639272 - AluSx SINE Alu -1 311 1 641 296 51 32 chr21 33268298 33268628 -1638942 + L1MC/D LINE L1 5252 5460 -758 390 245 0 36 chr21 33268860 33268999 -1638571 + G-rich Low_complexity Low_complexity 2 135 0 207 172 13 64 chr21 33269022 33269179 -1638391 + G-rich Low_complexity Low_complexity 3 151 0 2156 124 0 7 chr21 33269275 33269581 -1637989 + AluSx SINE Alu 1 304 -8 2354 76 0 30 chr21 33270067 33270368 -1637202 - AluY SINE Alu -19 292 1 550 300 9 47 chr21 33271039 33271272 -1636298 + MER45C DNA AcHobo 728 951 -2 1183 241 11 0 chr21 33271363 33271624 -1635946 + Tigger7 DNA MER2_type 1 264 -2223 1063 178 19 14 chr21 33271676 33271890 -1635680 + MLT2B3 LTR ERVL 321 535 -19 239 157 20 0 chr21 33271890 33271941 -1635629 + (TCTG)n Simple_repeat Simple_repeat 1 52 0 870 259 40 25 chr21 33272087 33272412 -1635158 + L1M4 LINE L1 4105 4434 -1712 2282 197 28 34 chr21 33272418 33272956 -1634614 + MLT2B3 LTR ERVL 1 535 -19 273 116 0 35 chr21 33272963 33273026 -1634544 + MLT2C1 LTR ERVL 351 390 -7 365 227 0 0 chr21 33273030 33273105 -1634465 + L1M4 LINE L1 4436 4510 -1636 977 188 5 54 chr21 33273105 33273262 -1634308 + MLT1A1 LTR MaLR 1 145 -220 2403 88 0 3 chr21 33273262 33273559 -1634011 + AluSg SINE Alu 1 296 -14 977 188 5 54 chr21 33273559 33273624 -1633946 + MLT1A1 LTR MaLR 145 212 -153 844 234 26 0 chr21 33273622 33273814 -1633756 - MLT2B3 LTR ERVL -79 475 279 687 165 118 0 chr21 33273812 33273939 -1633631 + MLT1A1 LTR MaLR 224 365 0 881 249 98 10 chr21 33273939 33274244 -1633326 + L1M4 LINE L1 4506 4837 -1309 1651 176 3 24 chr21 33274249 33274539 -1633031 + AluJb SINE Alu 3 286 -26 191 204 19 0 chr21 33274670 33274724 -1632846 + C-rich Low_complexity Low_complexity 5 59 0 2992 290 62 25 chr21 33276137 33277856 -1629714 + L1ME3A LINE L1 3796 5581 -583 1110 274 35 22 chr21 33277964 33278281 -1629289 + L1ME3A LINE L1 5850 6170 0 309 167 0 0 chr21 33279209 33279269 -1628301 - FRAM SINE Alu -70 96 37 338 347 103 28 chr21 33279272 33279592 -1627978 + L2 LINE L2 2030 2373 -941 264 230 40 27 chr21 33279967 33280041 -1627529 - MER58C DNA MER1_type -14 201 127 21 0 0 0 chr21 33281186 33281207 -1626363 + AT_rich Low_complexity Low_complexity 1 21 0 191 30 0 61 chr21 33284187 33284220 -1623350 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 209 238 48 27 chr21 33284403 33284550 -1623020 + G-rich Low_complexity Low_complexity 4 153 0 431 176 19 37 chr21 33284592 33284700 -1622870 + FLAM_A SINE Alu 15 120 -22 27 49 0 0 chr21 33284938 33284979 -1622591 + GC_rich Low_complexity Low_complexity 1 41 0 321 128 21 21 chr21 33284979 33285073 -1622497 + (CGG)n Simple_repeat Simple_repeat 1 94 0 219 227 39 23 chr21 33285148 33285276 -1622294 + (CGCGG)n Simple_repeat Simple_repeat 1 130 0 21 0 0 0 chr21 33285939 33285960 -1621610 + GC_rich Low_complexity Low_complexity 1 21 0 345 224 10 61 chr21 33287239 33287337 -1620233 - L2 LINE L2 -1 3271 3179 2525 71 0 6 chr21 33287825 33288136 -1619434 + AluY SINE Alu 1 309 -2 368 315 28 28 chr21 33288742 33288885 -1618685 - L2 LINE L2 -2 3311 3169 453 268 113 47 chr21 33289057 33289270 -1618300 - L2 LINE L2 -419 2895 2669 829 215 54 15 chr21 33289260 33289485 -1618085 - MIR SINE MIR -24 238 4 610 234 68 22 chr21 33289599 33289821 -1617749 - MER104 DNA MER2_type -4 1891 1660 264 296 40 20 chr21 33290198 33290350 -1617220 - L2 LINE L2 -990 2324 2170 809 204 164 22 chr21 33290506 33290830 -1616740 - L2 LINE L2 -1373 1941 1572 24 0 0 0 chr21 33291095 33291119 -1616451 + AT_rich Low_complexity Low_complexity 1 24 0 1676 156 3 0 chr21 33291788 33292071 -1615499 + Tigger5 DNA MER2_type 2040 2323 0 349 156 234 0 chr21 33292690 33292767 -1614803 - Tigger5 DNA MER2_type -1 2322 2228 303 241 83 83 chr21 33293084 33293217 -1614353 - MIR SINE MIR -1 261 129 454 299 75 16 chr21 33293189 33293376 -1614194 + L2 LINE L2 2567 2764 -550 2016 139 3 20 chr21 33294140 33294441 -1613129 - AluJb SINE Alu -16 296 1 699 268 97 44 chr21 33296801 33297275 -1610295 - L1ME2 LINE L1 -32 6132 5634 339 231 22 11 chr21 33297604 33297695 -1609875 + L1MD3 LINE L1 5591 5682 -2126 1231 272 83 51 chr21 33297697 33299603 -1607967 + L1MD3 LINE L1 5731 7866 -129 309 250 50 0 chr21 33299687 33299767 -1607803 + L1MC4a LINE L1 7725 7808 0 550 282 47 52 chr21 33300364 33300708 -1606862 - L1 LINE L1 -2008 4138 3797 418 214 0 0 chr21 33300896 33300980 -1606590 + MER63 DNA MER1_type 677 760 -302 280 241 0 0 chr21 33300978 33301036 -1606534 + MER63 DNA MER1_type 984 1041 -20 190 376 75 0 chr21 33301506 33301599 -1605971 - L2 LINE L2 -21 3292 3193 23 33 0 0 chr21 33303250 33303280 -1604290 + AT_rich Low_complexity Low_complexity 1 30 0 2213 80 56 0 chr21 33307193 33307480 -1600090 - AluY SINE Alu -8 303 1 344 266 144 6 chr21 33308340 33308513 -1599057 + L2 LINE L2 2305 2501 -813 327 239 150 9 chr21 33309048 33309161 -1598409 + MIR SINE MIR 113 241 -21 1779 92 107 32 chr21 33309822 33310103 -1597467 + AluSx SINE Alu 1 302 -10 200 209 0 0 chr21 33311430 33311473 -1596097 + (CAG)n Simple_repeat Simple_repeat 3 45 0 1855 143 16 29 chr21 33312328 33312636 -1594934 - AluJo SINE Alu -8 304 1 1559 143 82 66 chr21 33312926 33313351 -1594219 + L1MC3 LINE L1 6766 7197 -588 506 247 40 7 chr21 33313376 33313526 -1594044 + L1MC3 LINE L1 7257 7411 -374 459 152 28 11 chr21 33313539 33313638 -1593932 + L1MC3 LINE L1 7457 7679 -241 2384 116 61 12 chr21 33313693 33314143 -1593427 - MER1A DNA MER1_type 0 529 1 332 202 83 0 chr21 33314189 33314273 -1593297 + L1MC2 LINE L1 6254 6344 0 297 139 139 0 chr21 33314676 33314748 -1592822 + MER69 DNA AcHobo 286 367 -2159 2086 130 0 3 chr21 33315524 33315846 -1591724 - AluSx SINE Alu 0 321 1 306 228 152 33 chr21 33317385 33317477 -1590093 + L1M4 LINE L1 4149 4251 -1895 365 312 88 32 chr21 33317489 33317922 -1589648 + L1M4 LINE L1 4299 4755 -1391 1412 138 30 0 chr21 33318308 33318511 -1589059 + AluJb SINE Alu 83 291 -21 301 291 73 18 chr21 33318595 33318705 -1588865 + L1M LINE L1 5264 5379 -2429 569 256 0 6 chr21 33319583 33319763 -1587807 + (TG)n Simple_repeat Simple_repeat 1 179 0 1722 185 25 0 chr21 33321742 33322061 -1585509 - L1MC1 LINE L1 -2 6331 6005 503 291 48 12 chr21 33322138 33322303 -1585267 - L1ME3A LINE L1 -328 5842 5672 320 296 9 0 chr21 33323175 33323283 -1584287 + MER94 DNA DNA 14 122 -12 2329 85 0 0 chr21 33323591 33323892 -1583678 + AluSg SINE Alu 1 301 0 432 130 0 0 chr21 33323904 33323973 -1583597 + (TG)n Simple_repeat Simple_repeat 2 70 0 394 347 18 24 chr21 33325143 33325310 -1582260 - MIR SINE MIR 0 262 97 2815 101 0 3 chr21 33326964 33327339 -1580231 - THE1C LTR MaLR 0 375 2 458 325 13 21 chr21 33328854 33329088 -1578482 - HAL1 LINE L1 -825 1682 1451 1624 171 0 4 chr21 33329552 33329810 -1577760 - AluJo SINE Alu -26 286 30 374 330 94 41 chr21 33331670 33331988 -1575582 - L1MEc LINE L1 -4638 1758 1424 346 362 43 5 chr21 33332017 33332202 -1575368 - L1MEc LINE L1 -5185 1211 1020 198 0 0 0 chr21 33333723 33333745 -1573825 + (TG)n Simple_repeat Simple_repeat 2 23 0 1656 197 0 3 chr21 33333759 33334049 -1573521 - AluJo SINE Alu -17 295 7 1721 200 0 0 chr21 33334054 33334349 -1573221 - AluJb SINE Alu -15 297 3 258 222 42 0 chr21 33334418 33334490 -1573080 - L1ME2 LINE L1 -202 5962 5888 1865 174 0 16 chr21 33334818 33335128 -1572442 - AluJb SINE Alu -7 305 1 1795 167 7 17 chr21 33335198 33335217 -1572353 - AluJb SINE Alu -16 296 278 438 20 0 0 chr21 33335217 33335268 -1572302 + (TG)n Simple_repeat Simple_repeat 1 51 0 1795 167 7 17 chr21 33335268 33335547 -1572023 - AluJb SINE Alu -34 278 1 993 300 69 19 chr21 33336190 33336826 -1570744 - L1M4 LINE L1 -2898 3248 2581 314 325 51 51 chr21 33336900 33337155 -1570415 - MIR SINE MIR -5 257 3 258 257 48 48 chr21 33337325 33337430 -1570140 - MIR SINE MIR -88 120 16 2051 127 7 0 chr21 33339420 33339696 -1567874 + AluSx SINE Alu 22 299 -13 285 307 26 69 chr21 33343086 33343392 -1564178 - MER31-int LTR ERV1 -1136 3800 3508 1226 199 101 9 chr21 33343649 33343986 -1563584 - MLT1E1 LTR MaLR -158 496 129 21 0 0 0 chr21 33345192 33345213 -1562357 + AT_rich Low_complexity Low_complexity 1 21 0 433 204 102 0 chr21 33345505 33345613 -1561957 + MER58C DNA MER1_type 59 177 -38 264 126 138 46 chr21 33347041 33347128 -1560442 - L2 LINE L2 -2 3270 3176 2181 136 0 0 chr21 33349415 33349725 -1557845 - AluSx SINE Alu -2 310 1 411 228 38 95 chr21 33350404 33350438 -1557132 - L1ME1 LINE L1 -5 6161 6127 2073 98 4 0 chr21 33350438 33350704 -1556866 - AluSq SINE Alu -2 311 45 411 228 38 95 chr21 33350704 33350827 -1556743 - L1ME1 LINE L1 -39 6127 6013 409 250 43 0 chr21 33350834 33350950 -1556620 - MER90 LTR ERV1 -428 186 66 213 94 0 0 chr21 33351125 33351157 -1556413 + (TG)n Simple_repeat Simple_repeat 1 32 0 27 62 0 0 chr21 33351296 33351344 -1556226 + AT_rich Low_complexity Low_complexity 1 48 0 1894 138 10 27 chr21 33351414 33351711 -1555859 + AluJb SINE Alu 1 292 -20 279 272 195 0 chr21 33353743 33353938 -1553632 + L2 LINE L2 2252 2484 -830 209 277 102 62 chr21 33353979 33354156 -1553414 + L2 LINE L2 2650 2833 -481 555 265 44 0 chr21 33354452 33354588 -1552982 + L2 LINE L2 3172 3313 0 879 228 52 14 chr21 33355699 33355988 -1551582 - MER74B LTR ERVL -51 571 272 511 218 54 27 chr21 33356041 33356188 -1551382 - MER74B LTR ERVL -471 151 1 1325 232 46 14 chr21 33359888 33360301 -1547269 - Zaphod DNA AcHobo -2 4021 3596 348 155 70 0 chr21 33360394 33360465 -1547105 + MER58B DNA MER1_type 257 332 -9 517 196 75 65 chr21 33360472 33360507 -1547063 - Zaphod DNA AcHobo -3034 989 956 2067 113 44 10 chr21 33360507 33360800 -1546770 + AluSx SINE Alu 1 303 -9 517 196 75 65 chr21 33360800 33361086 -1546484 - Zaphod DNA AcHobo -3067 956 665 1336 167 29 13 chr21 33361110 33361781 -1545789 + MER54B LTR ERVL 1 791 -2 1043 239 104 25 chr21 33361781 33362282 -1545288 - Zaphod DNA AcHobo -3378 645 77 605 194 24 0 chr21 33366024 33366194 -1541376 + (TCCA)n Simple_repeat Simple_repeat 3 176 0 691 127 28 39 chr21 33366212 33366393 -1541177 + (TCCA)n Simple_repeat Simple_repeat 1 179 0 760 124 55 18 chr21 33366421 33366873 -1540697 + (TCCA)n Simple_repeat Simple_repeat 1 468 0 732 130 41 27 chr21 33366889 33367174 -1540396 + (TCCA)n Simple_repeat Simple_repeat 1 288 0 296 292 93 31 chr21 33368295 33368456 -1539114 - MLT1J2 LTR MaLR -139 311 141 250 154 123 0 chr21 33369502 33369567 -1538003 - L1ME4a LINE L1 0 6515 6443 1995 134 53 34 chr21 33369594 33369951 -1537619 - THE1B LTR MaLR 0 364 1 4247 171 28 29 chr21 33371611 33373089 -1534481 + MER52A LTR ERV1 1 1755 0 2156 90 45 0 chr21 33377977 33378265 -1529305 + AluSx SINE Alu 1 301 -11 363 58 19 0 chr21 33378266 33378318 -1529252 - L1MD2 LINE L1 -14 6345 6293 2323 201 71 22 chr21 33378318 33379261 -1528309 - L1ME4a LINE L1 -562 6074 5089 1529 223 92 42 chr21 33379256 33380108 -1527462 - L1ME4a LINE L1 -5341 1199 99 660 219 122 47 chr21 33380561 33380840 -1526730 - L1MC5 LINE L1 -51 7910 7611 194 278 0 19 chr21 33380869 33380923 -1526647 + L2 LINE L2 3211 3263 -9 222 149 30 30 chr21 33381077 33381144 -1526426 + (TA)n Simple_repeat Simple_repeat 1 67 0 2155 74 0 0 chr21 33384928 33385185 -1522385 + AluSx SINE Alu 1 257 -55 429 90 0 0 chr21 33385190 33385257 -1522313 + (CATA)n Simple_repeat Simple_repeat 2 68 0 21 57 0 0 chr21 33385956 33385991 -1521579 + AT_rich Low_complexity Low_complexity 1 35 0 260 27 27 0 chr21 33392088 33392125 -1515445 + (TTG)n Simple_repeat Simple_repeat 2 39 0 358 283 26 0 chr21 33392281 33392394 -1515176 + MIR SINE MIR 77 192 -70 2253 122 0 7 chr21 33394958 33395260 -1512310 - AluJb SINE Alu -12 300 1 249 276 60 49 chr21 33397068 33397253 -1510317 - L1M1 LINE L1 -847 5453 5267 6074 200 51 14 chr21 33397303 33398624 -1508946 - L1M1 LINE L1 -1250 4896 3520 2320 110 0 0 chr21 33398624 33398916 -1508654 - AluSx SINE Alu -20 292 1 6074 200 51 14 chr21 33398916 33398981 -1508589 - L1M1 LINE L1 -2626 3520 3459 3674 228 52 50 chr21 33399005 33399325 -1508245 - L1M4 LINE L1 -3816 2566 2248 2324 132 28 28 chr21 33399325 33399688 -1507882 - THE1B LTR MaLR 0 364 2 3674 228 52 50 chr21 33399688 33401167 -1506403 - L1M4 LINE L1 -4134 2248 777 367 293 65 38 chr21 33401459 33401644 -1505926 - L1M4 LINE L1 -5756 547 181 370 291 14 27 chr21 33401895 33402043 -1505527 - L1M4 LINE L1 -2098 4048 3903 429 272 81 31 chr21 33402044 33402305 -1505265 - L1M4 LINE L1 -2277 3869 3596 288 0 0 0 chr21 33402359 33402391 -1505179 + (TA)n Simple_repeat Simple_repeat 2 33 0 270 0 0 0 chr21 33402391 33402421 -1505149 + (T)n Simple_repeat Simple_repeat 1 30 0 666 243 28 22 chr21 33402826 33403007 -1504563 + MLT1G1 LTR MaLR 9 190 -405 236 231 0 19 chr21 33403056 33403108 -1504462 + MLT1G1 LTR MaLR 215 265 -290 1780 221 38 36 chr21 33403220 33403726 -1503844 + L1ME1 LINE L1 3261 3767 -2379 1694 242 25 19 chr21 33403813 33404289 -1503281 + L1ME1 LINE L1 3903 4381 -1765 1479 192 14 0 chr21 33404298 33404585 -1502985 + L1ME1 LINE L1 4448 4738 -1408 1814 158 42 6 chr21 33404640 33404970 -1502600 - L1MC1 LINE L1 -12 6321 5980 4372 197 47 10 chr21 33405072 33406725 -1500845 - L1MC1 LINE L1 -301 6032 4315 2516 230 84 54 chr21 33406706 33407422 -1500148 + L1ME1 LINE L1 4845 5538 -628 1720 143 85 0 chr21 33407422 33407694 -1499876 + AluSx SINE Alu 1 295 -17 2516 230 84 54 chr21 33407694 33407729 -1499841 + L1ME1 LINE L1 5538 5570 -596 2345 104 0 0 chr21 33407729 33408026 -1499544 + AluSg SINE Alu 1 297 -13 2516 230 84 54 chr21 33408026 33408550 -1499020 + L1ME1 LINE L1 5570 6160 -6 321 26 0 0 chr21 33409007 33409045 -1498525 + (CA)n Simple_repeat Simple_repeat 1 38 0 671 243 84 50 chr21 33410963 33411321 -1496249 - MER89 LTR ERV1 0 559 190 355 250 18 27 chr21 33412120 33412232 -1495338 - L2 LINE L2 0 3313 3203 229 311 106 7 chr21 33412713 33412864 -1494706 - L2 LINE L2 -722 2592 2427 843 180 52 6 chr21 33414316 33414488 -1493082 - Tigger7 DNA MER2_type -1 2486 2307 922 223 71 1 chr21 33414470 33414748 -1492822 - Tigger7 DNA MER2_type -2163 324 10 1803 173 0 10 chr21 33415498 33415799 -1491771 + AluJb SINE Alu 14 311 -1 2402 93 0 0 chr21 33417071 33417383 -1490187 - AluSx SINE Alu 0 312 1 513 147 0 0 chr21 33419115 33419210 -1488360 + (TG)n Simple_repeat Simple_repeat 1 95 0 403 326 91 21 chr21 33420716 33420903 -1486667 + L3 LINE CR1 1370 1569 -8 21 0 0 0 chr21 33422527 33422548 -1485022 + AT_rich Low_complexity Low_complexity 1 21 0 306 298 87 0 chr21 33423465 33423569 -1484001 - L2 LINE L2 -16 3297 3185 277 356 17 8 chr21 33423632 33423750 -1483820 + MER5B DNA MER1_type 58 176 -2 23 0 0 0 chr21 33423857 33423880 -1483690 + AT_rich Low_complexity Low_complexity 1 23 0 3072 256 33 14 chr21 33423900 33425417 -1482153 - L1ME1 LINE L1 -5 6161 4620 1020 197 8 52 chr21 33425418 33425550 -1482020 - L1ME1 LINE L1 -1997 4149 4032 1772 186 0 0 chr21 33425550 33425857 -1481713 - AluJo SINE Alu -5 307 1 1020 197 8 52 chr21 33425857 33425973 -1481597 - L1ME1 LINE L1 -2114 4032 3912 659 206 8 0 chr21 33425998 33426124 -1481446 + FLAM_A SINE Alu 8 134 -8 469 271 52 17 chr21 33426124 33426344 -1481226 - L1ME1 LINE L1 -2243 3903 3666 4028 243 69 28 chr21 33426343 33428944 -1478626 - L1MEc LINE L1 -2506 3709 977 248 278 139 62 chr21 33428996 33429190 -1478380 - L1MEc LINE L1 -5949 447 239 3504 129 26 72 chr21 33429602 33429753 -1477817 - HSMAR2 DNA Mariner 0 1302 1146 2036 110 3 3 chr21 33429753 33430043 -1477527 + AluSc SINE Alu 1 290 -19 3504 129 26 72 chr21 33430043 33430572 -1476998 - HSMAR2 DNA Mariner -156 1146 653 1528 92 9 0 chr21 33430570 33430787 -1476783 - HSMAR2 DNA Mariner -1081 221 3 225 0 0 0 chr21 33435580 33435605 -1471965 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 525 234 97 0 chr21 33438536 33438681 -1468889 - MER63C DNA MER1_type -55 875 717 1583 246 94 2 chr21 33438862 33439309 -1468261 - MER63C DNA MER1_type -442 488 1 2062 115 0 0 chr21 33440077 33440358 -1467212 + AluSg SINE Alu 5 286 -20 207 0 0 0 chr21 33440358 33440381 -1467189 + (CA)n Simple_repeat Simple_repeat 2 24 0 2435 60 0 0 chr21 33440394 33440694 -1466876 + AluY SINE Alu 1 300 -11 21 57 0 0 chr21 33441192 33441227 -1466343 + AT_rich Low_complexity Low_complexity 1 35 0 2535 27 7 0 chr21 33441368 33441669 -1465901 - AluY SINE Alu -8 303 1 2369 71 0 10 chr21 33441697 33442007 -1465563 + AluSx SINE Alu 1 307 -5 1479 166 61 18 chr21 33443114 33443391 -1464179 - AluJo SINE Alu -23 289 1 2936 233 83 39 chr21 33443456 33444534 -1463036 + Charlie2a DNA MER1_type 1236 2361 -501 292 259 0 35 chr21 33444740 33444825 -1462745 + G-rich Low_complexity Low_complexity 6 87 0 4533 175 44 8 chr21 33447356 33448545 -1459025 + L1MC1 LINE L1 4789 6024 -309 1823 119 43 11 chr21 33448545 33448823 -1458747 - AluSq SINE Alu -26 287 1 3117 161 32 3 chr21 33448823 33449893 -1457677 + L1M1 LINE L1 3202 4304 -3261 7403 161 38 12 chr21 33449887 33450791 -1456779 + L1M1 LINE L1 5291 6257 -1443 2022 118 0 10 chr21 33450791 33451088 -1456482 + AluSx SINE Alu 1 294 -18 7403 161 38 12 chr21 33451088 33451808 -1455762 + L1M1 LINE L1 6257 6957 -743 396 360 76 6 chr21 33451930 33452102 -1455468 + L1M2 LINE L1 1056 1239 -5610 3881 166 21 76 chr21 33452109 33452801 -1454769 + L1M2 LINE L1 1348 2076 -4773 1732 176 20 0 chr21 33452801 33453102 -1454468 - AluJb SINE Alu -5 307 1 3881 166 21 76 chr21 33453102 33453164 -1454406 + L1M2 LINE L1 2076 2140 -4709 2085 100 7 0 chr21 33453164 33453454 -1454116 + AluSp SINE Alu 1 292 -21 2413 87 3 0 chr21 33453458 33453770 -1453800 + AluSp SINE Alu 1 313 0 3881 166 21 76 chr21 33453770 33453947 -1453623 + L1M2 LINE L1 2143 2234 -4615 740 233 17 57 chr21 33454076 33454376 -1453194 - L1MEd LINE L1 -4864 1255 968 396 74 0 0 chr21 33454708 33454762 -1452808 + U2 snRNA snRNA 7 60 -128 305 114 0 150 chr21 33456092 33456259 -1451311 + (TGGGGG)n Simple_repeat Simple_repeat 3 144 0 2324 75 3 0 chr21 33457726 33458020 -1449550 + AluSp SINE Alu 1 295 -18 369 293 75 38 chr21 33458094 33458333 -1449237 - L1ME LINE L1 -298 5823 5576 515 309 91 5 chr21 33458603 33458823 -1448747 - MIR SINE MIR -3 259 21 453 297 22 0 chr21 33459526 33459664 -1447906 + MLT1E2 LTR MaLR 387 527 -99 372 304 84 11 chr21 33459873 33460064 -1447506 - L1MEd LINE L1 -3904 2480 2276 1675 157 0 34 chr21 33460210 33460503 -1447067 + AluJo SINE Alu 18 300 -12 310 329 46 19 chr21 33460816 33461032 -1446538 - HAL1 LINE L1 -861 1646 1425 1007 270 96 21 chr21 33461086 33461615 -1445955 - L1MEd LINE L1 -4870 1502 934 452 303 88 70 chr21 33461727 33462011 -1445559 - L1MEd LINE L1 -5607 765 477 592 172 8 47 chr21 33463346 33463474 -1444096 + MLT1B LTR MaLR 7 129 -261 622 257 83 12 chr21 33463539 33463792 -1443778 + MLT1B LTR MaLR 106 376 -14 353 235 8 50 chr21 33464143 33464262 -1443308 - MLT1H LTR MaLR 0 549 436 473 222 0 6 chr21 33465354 33465521 -1442049 + GA-rich Low_complexity Low_complexity 1 166 0 214 224 13 26 chr21 33465526 33465602 -1441968 + (CAGAGA)n Simple_repeat Simple_repeat 2 76 0 240 293 53 30 chr21 33466342 33466475 -1441095 + MLT1K LTR MaLR 444 579 -9 403 371 53 39 chr21 33470777 33471519 -1436051 + MER110-int LTR ERV1 2079 2830 -1817 2288 97 0 0 chr21 33472022 33472321 -1435249 + AluSx SINE Alu 1 299 -13 600 272 95 32 chr21 33473045 33473365 -1434205 + MER57A LTR ERV1 1 337 -36 1818 113 16 68 chr21 33473369 33473679 -1433891 - AluSx SINE Alu -17 295 2 294 200 9 91 chr21 33475141 33475251 -1432319 + G-rich Low_complexity Low_complexity 6 106 0 294 29 0 0 chr21 33478477 33478512 -1429058 + (TCTCCC)n Simple_repeat Simple_repeat 1 35 0 5238 82 39 11 chr21 33478521 33479418 -1428152 + SVA Other Other 47 866 -592 6446 61 16 24 chr21 33479433 33480317 -1427253 + SVA Other Other 510 1386 0 501 231 75 0 chr21 33480779 33480913 -1426657 + L1PB1 LINE L1 54 197 -6666 6533 160 37 7 chr21 33480910 33484731 -1422839 + L1PB1 LINE L1 1113 5268 -1599 180 0 0 0 chr21 33484731 33484751 -1422819 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 6533 160 37 7 chr21 33484751 33486401 -1421169 + L1PB1 LINE L1 5268 6867 0 2283 103 0 0 chr21 33486416 33486718 -1420852 + AluSx SINE Alu 1 302 -10 186 128 0 0 chr21 33486724 33486763 -1420807 + (TAAAAA)n Simple_repeat Simple_repeat 4 42 0 21 0 0 0 chr21 33489598 33489619 -1417951 + AT_rich Low_complexity Low_complexity 1 21 0 2192 85 0 22 chr21 33489619 33489937 -1417633 + AluY SINE Alu 1 311 0 290 335 0 0 chr21 33493691 33493858 -1413712 + G-rich Low_complexity Low_complexity 1 167 0 966 226 94 14 chr21 33496717 33497107 -1410463 - Charlie1b DNA MER1_type -4 519 79 363 246 14 40 chr21 33497648 33498003 -1409567 + C-rich Low_complexity Low_complexity 1 345 0 323 290 6 38 chr21 33498025 33498208 -1409362 + C-rich Low_complexity Low_complexity 4 180 0 23 0 0 0 chr21 33498403 33498426 -1409144 + GC_rich Low_complexity Low_complexity 1 23 0 232 224 35 12 chr21 33498758 33498874 -1408696 + (CGGGG)n Simple_repeat Simple_repeat 1 118 0 273 256 119 25 chr21 33499415 33499575 -1407995 + L1M4 LINE L1 3443 3617 -2529 494 263 90 0 chr21 33499576 33499709 -1407861 + L1M4 LINE L1 3620 3764 -2382 4545 161 84 9 chr21 33499720 33500560 -1407010 - MER4D LTR ERV1 0 903 1 943 174 5 5 chr21 33500664 33500848 -1406722 - LTR2 LTR ERV1 0 449 266 268 316 0 76 chr21 33500844 33501015 -1406555 - LTR2 LTR ERV1 -289 160 3 237 279 156 13 chr21 33501381 33501535 -1406035 + L1M4 LINE L1 5413 5588 -596 1707 194 46 35 chr21 33501537 33501970 -1405600 - LTR42 LTR ERVL 0 495 58 449 215 33 8 chr21 33506214 33506335 -1401235 - MLT1B LTR MaLR -11 379 256 397 189 11 22 chr21 33506357 33506447 -1401123 - MLT1B LTR MaLR -285 89 1 419 368 58 19 chr21 33506452 33506713 -1400857 - L1 LINE L1 -1135 5011 4741 365 357 99 40 chr21 33506818 33507244 -1400326 - L1 LINE L1 -1539 4607 4157 997 253 4 9 chr21 33507307 33507532 -1400038 + MER58A DNA MER1_type 1 224 0 243 350 19 25 chr21 33507637 33507794 -1399776 - L1 LINE L1 -2207 3939 3784 2680 116 80 5 chr21 33507925 33508323 -1399247 + MSTA LTR MaLR 1 428 0 589 326 60 9 chr21 33508391 33508624 -1398946 - MIR SINE MIR 0 262 18 2002 116 32 29 chr21 33508806 33509117 -1398453 - AluSx SINE Alu 0 312 1 1461 149 21 82 chr21 33509686 33510014 -1397556 + AluJo SINE Alu 1 308 -4 289 250 0 98 chr21 33514151 33514263 -1393307 + MLT1A2 LTR MaLR 25 125 -249 1369 265 16 38 chr21 33515339 33515712 -1391858 + MLT1A1 LTR MaLR 1 365 0 316 176 52 0 chr21 33515790 33515878 -1391692 - L1MC4 LINE L1 0 8042 7904 2146 98 0 14 chr21 33515915 33516210 -1391360 - AluSx SINE Alu 0 312 22 262 242 15 0 chr21 33516228 33516294 -1391276 - L1MC4 LINE L1 -422 7620 7554 819 295 68 24 chr21 33516384 33516850 -1390720 - L1MC4 LINE L1 -602 7206 6829 232 362 23 6 chr21 33518092 33518269 -1389301 + (CA)n Simple_repeat Simple_repeat 1 180 0 252 307 0 0 chr21 33520600 33520779 -1386791 + (CA)n Simple_repeat Simple_repeat 2 180 0 214 250 0 0 chr21 33520808 33520856 -1386714 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 106 0 0 chr21 33521450 33521743 -1385827 + AluSq SINE Alu 9 301 -12 750 175 22 15 chr21 33522120 33522257 -1385313 - L1MC1 LINE L1 0 6333 6196 315 0 0 0 chr21 33522282 33522317 -1385253 + (CA)n Simple_repeat Simple_repeat 2 36 0 483 48 0 0 chr21 33522384 33522446 -1385124 + (TCCA)n Simple_repeat Simple_repeat 2 63 0 4828 206 37 9 chr21 33522480 33523945 -1383625 + L1MC1 LINE L1 4828 6333 0 497 108 12 0 chr21 33524145 33524228 -1383342 + L1PA10 LINE L1 3418 3501 -2645 6269 116 5 4 chr21 33524316 33525327 -1382243 - L1PA10 LINE L1 -1760 4386 3375 6369 142 32 0 chr21 33525327 33527079 -1380491 + L1PA10 LINE L1 4391 6168 0 205 224 118 0 chr21 33527642 33527718 -1379852 + MER5A DNA MER1_type 9 93 -96 402 204 43 0 chr21 33527918 33528011 -1379559 - MER5A DNA MER1_type -80 109 13 208 208 69 56 chr21 33531177 33531249 -1376321 + MER5A DNA MER1_type 17 89 -100 335 169 157 11 chr21 33532070 33532159 -1375411 - MER58B DNA MER1_type 0 341 240 1921 128 3 3 chr21 33532396 33532678 -1374892 + AluSx SINE Alu 1 282 -30 251 280 65 0 chr21 33532696 33532789 -1374781 - L1MCa LINE L1 -4478 1948 1850 253 279 0 0 chr21 33537565 33537626 -1369944 + L2 LINE L2 3002 3062 -210 322 276 0 41 chr21 33537705 33537803 -1369767 - L2 LINE L2 -18 3295 3202 861 229 0 10 chr21 33538935 33539127 -1368443 - MER66B LTR ERV1 -270 216 27 1538 221 43 8 chr21 33539374 33539749 -1367821 - MLT1B LTR MaLR -2 388 1 339 211 34 88 chr21 33541829 33541976 -1365594 + MER96B DNA MER1_type? 256 394 -23 352 286 7 20 chr21 33542532 33542679 -1364891 + G-rich Low_complexity Low_complexity 4 148 0 251 211 11 0 chr21 33542873 33542968 -1364602 + (TG)n Simple_repeat Simple_repeat 2 97 0 582 184 0 0 chr21 33542979 33543153 -1364417 + (TG)n Simple_repeat Simple_repeat 1 174 0 314 250 6 0 chr21 33543209 33543377 -1364193 + (TG)n Simple_repeat Simple_repeat 2 170 0 296 288 96 10 chr21 33544200 33544398 -1363172 + L2 LINE L2 2852 3066 -247 237 277 60 12 chr21 33544427 33544510 -1363060 + L2 LINE L2 3176 3262 -51 787 239 60 30 chr21 33547597 33547865 -1359705 + MLT1F LTR MaLR 267 542 0 1723 215 84 25 chr21 33547961 33548402 -1359168 + MLT1C LTR MaLR 1 467 0 2263 109 0 3 chr21 33548433 33548744 -1358826 + AluSq SINE Alu 3 312 -1 2355 65 0 0 chr21 33549582 33549874 -1357696 - AluY SINE Alu -19 292 1 411 186 0 58 chr21 33550305 33550391 -1357179 - L1MC2 LINE L1 0 6344 6264 451 254 162 0 chr21 33550402 33550544 -1357026 - L1MC2 LINE L1 -113 6231 6067 1305 101 2 2 chr21 33550904 33551258 -1356312 + (TCCA)n Simple_repeat Simple_repeat 1 532 0 797 153 6 45 chr21 33552591 33552748 -1354822 + L1MB7 LINE L1 6034 6184 0 646 271 69 67 chr21 33552748 33552960 -1354610 + L1M4 LINE L1 4276 4486 -1660 1912 122 49 0 chr21 33552960 33553247 -1354323 + AluSx SINE Alu 3 303 -9 646 271 69 67 chr21 33553247 33553524 -1354046 + L1M4 LINE L1 4486 4766 -1380 1910 109 14 21 chr21 33554247 33554565 -1353005 + AluSg SINE Alu 1 316 0 21 57 0 0 chr21 33556780 33556815 -1350755 + AT_rich Low_complexity Low_complexity 1 35 0 2074 133 0 0 chr21 33556820 33557129 -1350441 - AluSx SINE Alu -3 309 1 1932 156 3 0 chr21 33557136 33557425 -1350145 - AluJo SINE Alu -22 290 1 322 299 78 52 chr21 33557442 33557787 -1349783 + L1MC4a LINE L1 6414 6767 -1041 251 260 52 0 chr21 33558132 33558209 -1349361 + L1MC4 LINE L1 7099 7179 -863 415 276 26 0 chr21 33559480 33559596 -1347974 + MIR SINE MIR 32 150 -112 1879 145 0 14 chr21 33560014 33560310 -1347260 + AluJo SINE Alu 17 308 -4 344 358 17 11 chr21 33560764 33560943 -1346627 + (CA)n Simple_repeat Simple_repeat 1 180 0 255 281 39 23 chr21 33560966 33561094 -1346476 + (CA)n Simple_repeat Simple_repeat 1 130 0 351 269 15 30 chr21 33561106 33561368 -1346202 + (CA)n Simple_repeat Simple_repeat 1 258 0 2359 99 0 0 chr21 33562769 33563082 -1344488 + AluSq SINE Alu 1 313 0 264 315 0 0 chr21 33563683 33563756 -1343814 + (CA)n Simple_repeat Simple_repeat 2 74 0 711 231 121 42 chr21 33563760 33564115 -1343455 + MLT1B LTR MaLR 2 384 -6 203 385 0 22 chr21 33564312 33564494 -1343076 + (CATATA)n Simple_repeat Simple_repeat 1 178 0 555 333 0 6 chr21 33564644 33564815 -1342755 + MIR SINE MIR 14 183 -79 2387 287 54 15 chr21 33564886 33564955 -1342615 + L1MC/D LINE L1 2841 2906 -3240 658 193 22 37 chr21 33564955 33565090 -1342480 + FLAM_A SINE Alu 1 133 0 2387 287 54 15 chr21 33565090 33565775 -1341795 + L1MC/D LINE L1 2906 3660 -2486 1748 168 73 24 chr21 33565775 33566145 -1341425 + MLT1B LTR MaLR 1 388 -2 2387 287 54 15 chr21 33566145 33566551 -1341019 + L1MC/D LINE L1 3660 4048 -2098 494 154 87 10 chr21 33566636 33566740 -1340830 + MLT1B LTR MaLR 25 136 -254 414 322 41 0 chr21 33566752 33566873 -1340697 + L1MC/D LINE L1 4061 4186 -1960 459 271 82 0 chr21 33566873 33567043 -1340527 + LTR50 LTR ERVL 2 185 -610 231 284 30 0 chr21 33567054 33567121 -1340449 + L1MC4 LINE L1 7602 7670 -372 1796 229 151 9 chr21 33567278 33567841 -1339729 + LTR48B LTR ERV1 1 643 -1 346 260 13 0 chr21 33569284 33569361 -1338209 - MIR SINE MIR -87 175 98 434 183 17 78 chr21 33571038 33571084 -1336486 + MLT1D LTR MaLR 417 434 -71 2200 82 24 0 chr21 33571084 33571378 -1336192 - AluSx SINE Alu -11 301 1 434 183 17 78 chr21 33571378 33571446 -1336124 + MLT1D LTR MaLR 434 505 0 434 269 14 50 chr21 33573726 33573867 -1333703 + L1MC/D LINE L1 5169 5304 -842 286 219 49 0 chr21 33574155 33574237 -1333333 + L1MC/D LINE L1 5665 5750 -492 2168 95 16 10 chr21 33576700 33577006 -1330564 + AluSg SINE Alu 1 308 -2 584 243 60 11 chr21 33578737 33578922 -1328648 - MER67C LTR ERV1 0 710 517 355 212 24 0 chr21 33578998 33579083 -1328487 - MER67C LTR ERV1 -506 204 118 307 266 45 17 chr21 33579504 33579710 -1327860 - L1M3 LINE L1 -425 5827 5618 574 324 44 31 chr21 33579883 33580244 -1327326 - L1M3 LINE L1 -843 5372 4969 2401 75 0 0 chr21 33580280 33580586 -1326984 + AluSx SINE Alu 1 306 -6 973 310 85 32 chr21 33580605 33581114 -1326456 - L1M3 LINE L1 -3767 2457 1952 1401 232 77 97 chr21 33581114 33581753 -1325817 + MLT1E2 LTR MaLR 1 626 0 973 310 85 32 chr21 33581753 33581813 -1325757 - L1M3 LINE L1 -4272 1952 1897 377 326 0 0 chr21 33581956 33582054 -1325516 - L1MDa LINE L1 -4567 1973 1876 918 250 32 0 chr21 33582056 33582340 -1325230 + L1MD3 LINE L1 6960 7252 -743 372 328 0 0 chr21 33582348 33582467 -1325103 + MLT1F1 LTR MaLR 1 119 -448 1825 232 55 12 chr21 33582471 33583039 -1324531 + L1MD3 LINE L1 7402 7993 -2 1530 213 29 0 chr21 33583086 33583396 -1324174 - MER2 DNA MER2_type -25 319 1 421 321 107 33 chr21 33583396 33583611 -1323959 - HAL1 LINE L1 -936 1571 1341 250 259 102 54 chr21 33583705 33583852 -1323718 - MLT1H LTR MaLR -264 285 132 274 217 29 0 chr21 33585059 33585128 -1322442 + C-rich Low_complexity Low_complexity 4 74 0 319 197 0 92 chr21 33586007 33586149 -1321421 + G-rich Low_complexity Low_complexity 3 131 0 754 264 91 54 chr21 33587770 33588288 -1319282 + MER34 LTR ERV1 4 540 -2 284 296 9 87 chr21 33590172 33590287 -1317283 - MIR SINE MIR -128 134 29 180 100 0 180 chr21 33593014 33593064 -1314506 + L2 LINE L2 3181 3221 -92 545 294 65 16 chr21 33593184 33593493 -1314077 + MLT1D LTR MaLR 3 326 -179 305 266 32 11 chr21 33593540 33593634 -1313936 + MLT1D LTR MaLR 363 458 -9 194 299 47 47 chr21 33594412 33594519 -1313051 - MER5B DNA MER1_type -67 111 5 2113 114 0 7 chr21 33594787 33595086 -1312484 - AluSx SINE Alu -15 297 1 24 0 0 0 chr21 33595103 33595127 -1312443 + AT_rich Low_complexity Low_complexity 1 24 0 205 327 91 0 chr21 33597872 33597982 -1309588 + MER5A DNA MER1_type 5 124 -65 210 193 0 0 chr21 33598266 33598323 -1309247 + (TG)n Simple_repeat Simple_repeat 2 58 0 270 282 24 16 chr21 33599736 33599860 -1307710 + LTR33 LTR ERVL 376 500 -21 2182 119 3 0 chr21 33599924 33600234 -1307336 - AluY SINE Alu 0 311 1 698 144 51 0 chr21 33601973 33602091 -1305479 - THE1B LTR MaLR -240 124 1 282 75 0 0 chr21 33602126 33602166 -1305404 - THE1C LTR MaLR -335 40 1 674 342 48 27 chr21 33602265 33602748 -1304822 - L1ME1 LINE L1 -5 6161 5669 336 341 0 0 chr21 33602750 33602841 -1304729 - L1ME1 LINE L1 -521 5643 5553 395 289 0 0 chr21 33603009 33603106 -1304464 - MIR SINE MIR -116 146 50 274 300 113 33 chr21 33604721 33604871 -1302699 - MIR SINE MIR -74 188 27 406 354 81 42 chr21 33605254 33605653 -1301917 - L1ME1 LINE L1 -1733 4413 3961 2097 146 7 0 chr21 33605653 33605962 -1301608 + AluJb SINE Alu 1 311 -1 406 354 81 42 chr21 33605962 33606121 -1301449 - L1ME1 LINE L1 -2185 3961 3810 2082 110 0 0 chr21 33606324 33606606 -1300964 - AluSx SINE Alu -26 286 5 332 320 50 32 chr21 33606865 33607084 -1300486 - L1ME LINE L1 -489 6069 5847 1053 256 24 6 chr21 33607463 33607803 -1299767 - L1ME LINE L1 -1274 5266 4921 2442 254 72 18 chr21 33607830 33608728 -1298842 - L1ME LINE L1 -1751 4789 3843 822 232 0 0 chr21 33608795 33608976 -1298594 - AluJo SINE Alu -16 296 116 2197 102 7 0 chr21 33609052 33609345 -1298225 + AluSx SINE Alu 1 295 -17 2434 256 58 46 chr21 33609385 33610387 -1297183 - L1MEc LINE L1 -2936 3604 2619 2245 93 7 3 chr21 33610387 33610697 -1296873 + AluY SINE Alu 1 311 0 2434 256 58 46 chr21 33610697 33611117 -1296453 - L1MEc LINE L1 -3921 2619 2205 341 316 31 77 chr21 33611336 33611387 -1296183 - L1MEc LINE L1 -4614 1926 1874 2174 114 0 0 chr21 33611387 33611684 -1295886 + AluY SINE Alu 1 297 -14 341 316 31 77 chr21 33611684 33611828 -1295742 - L1MEc LINE L1 -4666 1874 1740 759 280 56 8 chr21 33611921 33612317 -1295253 - L1MEc LINE L1 -5007 1533 1119 284 221 6 19 chr21 33614079 33614237 -1293333 + (CA)n Simple_repeat Simple_repeat 2 157 0 24 32 0 0 chr21 33615464 33615495 -1292075 + GC_rich Low_complexity Low_complexity 1 31 0 284 110 7 90 chr21 33615523 33615668 -1291902 + (CCCCG)n Simple_repeat Simple_repeat 2 134 0 2145 104 0 16 chr21 33622774 33623082 -1284488 - AluSx SINE Alu -9 303 1 276 120 0 0 chr21 33624578 33624628 -1282942 + (GGA)n Simple_repeat Simple_repeat 1 50 0 309 225 100 8 chr21 33625385 33625505 -1282065 + MLT1D LTR MaLR 98 228 -277 301 256 0 11 chr21 33632565 33632741 -1274829 + (CA)n Simple_repeat Simple_repeat 1 174 0 2003 100 0 81 chr21 33633333 33633654 -1273916 - AluSp SINE Alu -18 295 1 34 24 0 0 chr21 33634019 33634060 -1273510 + GC_rich Low_complexity Low_complexity 1 41 0 2294 91 0 0 chr21 33636648 33636945 -1270625 - AluSx SINE Alu -15 297 1 695 235 12 6 chr21 33639004 33639174 -1268396 - L1MB5 LINE L1 0 6174 6004 2184 97 7 13 chr21 33639431 33639741 -1267829 - AluSc SINE Alu -1 308 1 224 279 51 13 chr21 33644291 33644370 -1263200 + MIR SINE MIR 77 158 -104 183 205 0 54 chr21 33645753 33645865 -1261705 + GA-rich Low_complexity Low_complexity 1 106 0 263 194 30 0 chr21 33647171 33647238 -1260332 + (CTGGGG)n Simple_repeat Simple_repeat 4 72 0 206 152 17 0 chr21 33647643 33647702 -1259868 + (CA)n Simple_repeat Simple_repeat 1 60 0 432 224 0 0 chr21 33647714 33647884 -1259686 + (CA)n Simple_repeat Simple_repeat 1 170 0 216 188 0 0 chr21 33647898 33647962 -1259608 + (CA)n Simple_repeat Simple_repeat 1 64 0 405 230 0 0 chr21 33647974 33648152 -1259418 + (CA)n Simple_repeat Simple_repeat 1 178 0 459 219 0 0 chr21 33648164 33648342 -1259228 + (CA)n Simple_repeat Simple_repeat 1 178 0 411 228 0 0 chr21 33648428 33648608 -1258962 + (CA)n Simple_repeat Simple_repeat 1 180 0 213 236 0 0 chr21 33648628 33648734 -1258836 + (CA)n Simple_repeat Simple_repeat 1 106 0 450 220 0 0 chr21 33648746 33648923 -1258647 + (CA)n Simple_repeat Simple_repeat 1 177 0 279 358 31 31 chr21 33651287 33651449 -1256121 + MER5B DNA MER1_type 13 174 -4 409 305 92 52 chr21 33653219 33653698 -1253872 - L1M2 LINE L1 -5612 1237 740 3083 266 51 2 chr21 33655510 33656914 -1250656 - L1MB7 LINE L1 -10 6174 4700 3794 214 96 40 chr21 33656928 33657735 -1249835 + L1M4 LINE L1 3370 4277 -1869 224 20 0 82 chr21 33657735 33657784 -1249786 + (TA)n Simple_repeat Simple_repeat 1 45 0 3794 214 96 40 chr21 33657784 33658252 -1249318 + L1M4 LINE L1 4277 4717 -1429 247 434 0 6 chr21 33658822 33658997 -1248573 + (CA)n Simple_repeat Simple_repeat 1 174 0 297 324 34 28 chr21 33658898 33659077 -1248493 + (CATG)n Simple_repeat Simple_repeat 1 180 0 297 301 64 19 chr21 33659139 33659295 -1248275 - L1MC4 LINE L1 -186 7856 7694 478 265 0 48 chr21 33662897 33663086 -1244484 + (TATG)n Simple_repeat Simple_repeat 1 180 0 401 344 0 16 chr21 33663117 33663300 -1244270 + (TG)n Simple_repeat Simple_repeat 1 180 0 446 269 5 54 chr21 33663273 33663459 -1244111 + (TATG)n Simple_repeat Simple_repeat 1 177 0 306 321 5 49 chr21 33663372 33663556 -1244014 + (TATATG)n Simple_repeat Simple_repeat 4 179 0 471 251 11 44 chr21 33663579 33663905 -1243665 + (TATG)n Simple_repeat Simple_repeat 1 315 0 232 394 0 0 chr21 33663886 33663980 -1243590 + (CGTG)n Simple_repeat Simple_repeat 2 95 0 272 289 36 12 chr21 33665092 33665175 -1242395 + MIR SINE MIR 60 144 -118 234 337 69 0 chr21 33667680 33667781 -1239789 - MIR SINE MIR -66 196 89 216 0 0 0 chr21 33668642 33668666 -1238904 + (GGGA)n Simple_repeat Simple_repeat 4 27 0 302 298 70 38 chr21 33670553 33670711 -1236859 - MIR SINE MIR -85 177 15 844 168 81 25 chr21 33671526 33671753 -1235817 - L1MA9 LINE L1 -53 6247 5996 547 149 19 0 chr21 33671788 33671895 -1235675 + L1M4c LINE L1 1665 1773 -4611 760 114 58 3 chr21 33672176 33672329 -1235241 - L1MA9 LINE L1 -186 6003 5847 8556 163 50 8 chr21 33672327 33674108 -1233462 - L1M4c LINE L1 -4509 1875 20 2213 117 3 0 chr21 33674155 33674462 -1233108 + AluSp SINE Alu 1 308 -5 1199 184 19 8 chr21 33675034 33675290 -1232280 - MLT1D LTR MaLR -1 504 246 325 282 46 8 chr21 33675351 33675482 -1232088 - MLT1D LTR MaLR -369 136 1 363 265 68 53 chr21 33680716 33680848 -1226722 - L1ME LINE L1 -669 5452 5319 189 0 0 0 chr21 33680965 33680986 -1226584 + (T)n Simple_repeat Simple_repeat 1 21 0 2312 95 0 16 chr21 33681009 33681326 -1226244 - AluSx SINE Alu 0 312 1 2302 55 41 0 chr21 33682758 33683050 -1224520 - AluY SINE Alu -7 304 1 504 118 58 6 chr21 33684790 33685129 -1222441 + (TG)n Simple_repeat Simple_repeat 1 356 0 231 104 70 35 chr21 33687041 33687156 -1220414 + (TG)n Simple_repeat Simple_repeat 1 119 0 497 123 38 48 chr21 33687197 33687491 -1220079 + (TG)n Simple_repeat Simple_repeat 1 291 0 201 211 0 0 chr21 33689669 33689726 -1217844 + (TG)n Simple_repeat Simple_repeat 1 57 0 412 227 30 30 chr21 33689740 33690047 -1217523 + (CA)n Simple_repeat Simple_repeat 1 307 0 263 141 50 20 chr21 33690058 33690157 -1217413 + (CA)n Simple_repeat Simple_repeat 1 102 0 413 327 0 29 chr21 33694400 33694757 -1212813 + (CA)n Simple_repeat Simple_repeat 1 346 0 222 256 0 24 chr21 33694797 33694922 -1212648 + (CA)n Simple_repeat Simple_repeat 1 122 0 1656 109 0 68 chr21 33695575 33695840 -1211730 - AluSq SINE Alu -66 247 1 967 204 0 0 chr21 33695889 33696051 -1211519 + FRAM SINE Alu 1 162 -14 351 195 10 57 chr21 33700341 33700655 -1206915 + C-rich Low_complexity Low_complexity 1 299 0 278 243 54 0 chr21 33702542 33702616 -1204954 + MIR SINE MIR 79 156 -106 200 200 0 0 chr21 33704300 33704340 -1203230 + CT-rich Low_complexity Low_complexity 6 45 0 222 208 0 0 chr21 33706224 33706277 -1201293 + (CA)n Simple_repeat Simple_repeat 1 53 0 263 275 7 70 chr21 33706288 33706430 -1201140 + (CATATA)n Simple_repeat Simple_repeat 3 135 0 225 269 0 0 chr21 33706488 33706566 -1201004 + (CATA)n Simple_repeat Simple_repeat 1 78 0 301 372 41 29 chr21 33709600 33709772 -1197798 + L1M4c LINE L1 1536 1709 -4719 465 356 108 15 chr21 33710270 33710557 -1197013 + L1M4c LINE L1 2231 2520 -3908 298 147 28 28 chr21 33710603 33710746 -1196824 + (TG)n Simple_repeat Simple_repeat 1 143 0 207 161 52 17 chr21 33710799 33710973 -1196597 + (TG)n Simple_repeat Simple_repeat 1 180 0 261 102 78 23 chr21 33710998 33711126 -1196444 + (GTGTG)n Simple_repeat Simple_repeat 1 135 0 254 99 74 25 chr21 33711155 33711317 -1196253 + (TG)n Simple_repeat Simple_repeat 2 171 0 296 140 86 11 chr21 33711322 33711415 -1196155 + (GTGTG)n Simple_repeat Simple_repeat 1 100 0 298 113 65 18 chr21 33711415 33711583 -1195987 + (TG)n Simple_repeat Simple_repeat 2 177 0 268 132 26 40 chr21 33711588 33711664 -1195906 + (GTGTG)n Simple_repeat Simple_repeat 1 75 0 3279 26 0 0 chr21 33713542 33713963 -1193607 - L1P1 LINE L1 -433 5722 5302 3330 18 0 8 chr21 33713963 33714341 -1193229 + L1PA3 LINE L1 5777 6154 -1 25 0 0 0 chr21 33714341 33714366 -1193204 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr21 33715038 33715068 -1192502 + GC_rich Low_complexity Low_complexity 1 30 0 262 250 0 50 chr21 33717250 33717370 -1190200 + CT-rich Low_complexity Low_complexity 2 115 0 677 224 15 5 chr21 33718503 33719082 -1188488 + (TGGG)n Simple_repeat Simple_repeat 1 584 0 268 181 47 0 chr21 33721478 33721649 -1185921 + (CA)n Simple_repeat Simple_repeat 2 180 0 291 276 158 0 chr21 33727484 33727611 -1179959 + L1MD1 LINE L1 32 178 -6362 646 240 52 16 chr21 33727689 33727881 -1179689 + L1MD1 LINE L1 190 388 -6152 4258 217 68 47 chr21 33727917 33731119 -1176451 + L1MD1 LINE L1 452 4813 -1727 1937 157 44 39 chr21 33731119 33731292 -1176278 + MLT1B LTR MaLR 1 172 -218 2333 100 3 0 chr21 33731292 33731603 -1175967 + AluSp SINE Alu 1 312 -1 1937 157 44 39 chr21 33731603 33731817 -1175753 + MLT1B LTR MaLR 172 390 0 4258 217 68 47 chr21 33731817 33732504 -1175066 + L1MD1 LINE L1 4813 5484 -1056 336 338 15 29 chr21 33732507 33732643 -1174927 + L1MD1 LINE L1 5513 5646 -894 3355 198 62 43 chr21 33732644 33733615 -1173955 + L1MD1 LINE L1 5648 6636 0 755 139 8 0 chr21 33736800 33736929 -1170641 - MER46B DNA MER2_type -60 176 47 571 206 35 65 chr21 33736995 33737129 -1170441 - MER46B DNA MER2_type -2690 41 36 2225 101 14 0 chr21 33737129 33737425 -1170145 - AluSx SINE Alu -12 300 1 571 206 35 65 chr21 33737425 33737460 -1170110 - MER46B DNA MER2_type -2695 36 2 471 328 29 29 chr21 33739116 33739320 -1168250 + L1ME LINE L1 5565 5768 -353 221 245 29 0 chr21 33740131 33740270 -1167300 + (TG)n Simple_repeat Simple_repeat 2 144 0 245 208 39 7 chr21 33740353 33740507 -1167063 + (TG)n Simple_repeat Simple_repeat 2 160 0 281 228 32 14 chr21 33740524 33740804 -1166766 + (TG)n Simple_repeat Simple_repeat 1 285 0 285 209 40 0 chr21 33740822 33740970 -1166600 + (TG)n Simple_repeat Simple_repeat 1 154 0 235 239 0 102 chr21 33741620 33741817 -1165753 + G-rich Low_complexity Low_complexity 3 179 0 2191 124 0 3 chr21 33742988 33743294 -1164276 - AluSx SINE Alu -7 305 1 186 43 0 0 chr21 33751584 33751607 -1155963 + (GAA)n Simple_repeat Simple_repeat 2 24 0 23 54 0 0 chr21 33753017 33753054 -1154516 + GC_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr21 33753570 33753599 -1153971 + GC_rich Low_complexity Low_complexity 1 29 0 268 340 0 0 chr21 33755643 33755743 -1151827 + (CA)n Simple_repeat Simple_repeat 2 101 0 2351 133 30 5 chr21 33755743 33756150 -1151420 + MSTB LTR MaLR 1 417 -9 288 292 9 9 chr21 33756157 33756263 -1151307 + (CA)n Simple_repeat Simple_repeat 1 106 0 985 286 36 3 chr21 33757484 33757841 -1149729 + L1ME2 LINE L1 4163 4531 -1615 2844 148 20 9 chr21 33757841 33758448 -1149122 + MER4B LTR ERV1 1 779 0 701 234 27 0 chr21 33758448 33758636 -1148934 + L1ME2 LINE L1 4528 4720 -1426 441 321 76 4 chr21 33758637 33758874 -1148696 + L1ME2 LINE L1 4789 5042 -1104 1040 257 97 35 chr21 33758898 33759030 -1148540 + L1ME2 LINE L1 5197 5319 -845 2061 111 0 0 chr21 33759030 33759310 -1148260 + AluSx SINE Alu 1 280 -32 201 39 0 0 chr21 33759310 33759336 -1148234 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1040 257 97 35 chr21 33759336 33759784 -1147786 + L1ME2 LINE L1 5318 5833 -331 254 143 0 67 chr21 33760197 33760316 -1147254 + (AGGGGG)n Simple_repeat Simple_repeat 3 113 0 210 222 0 30 chr21 33761401 33761500 -1146070 + C-rich Low_complexity Low_complexity 1 96 0 898 86 47 0 chr21 33761710 33761838 -1145732 + AluSp/q SINE Alu 171 304 -9 436 339 75 54 chr21 33761842 33762267 -1145303 - L1M4 LINE L1 -2973 3173 2740 984 165 43 5 chr21 33764020 33764208 -1143362 - L1MB3 LINE L1 -1 6182 5988 229 259 0 82 chr21 33764215 33764350 -1143220 + C-rich Low_complexity Low_complexity 6 129 0 369 308 71 9 chr21 33764389 33764600 -1142970 - L1MB3 LINE L1 -260 5923 5700 22 35 0 0 chr21 33764994 33765023 -1142547 + GC_rich Low_complexity Low_complexity 1 29 0 282 236 4 22 chr21 33765033 33765319 -1142251 + G-rich Low_complexity Low_complexity 1 280 0 25 0 0 0 chr21 33765373 33765398 -1142172 + GC_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr21 33765481 33765502 -1142068 + (CGGGG)n Simple_repeat Simple_repeat 3 23 0 246 222 0 16 chr21 33766287 33766350 -1141220 - Charlie8 DNA MER1_type -2252 165 104 21 36 0 0 chr21 33766376 33766404 -1141166 + AT_rich Low_complexity Low_complexity 1 28 0 2306 107 0 0 chr21 33768640 33768949 -1138621 - AluSc SINE Alu 0 309 1 308 351 46 23 chr21 33768956 33769087 -1138483 + L1M4 LINE L1 5059 5192 -954 2109 116 0 0 chr21 33771321 33771648 -1135922 + AluSx SINE Alu 1 327 0 2275 109 0 0 chr21 33771693 33771997 -1135573 + AluSc SINE Alu 1 304 -5 814 328 25 12 chr21 33772244 33772643 -1134927 + L1MEc LINE L1 34 437 -5959 2862 254 21 18 chr21 33772718 33773608 -1133962 + L1MEc LINE L1 355 1247 -5149 2043 286 60 33 chr21 33773640 33773903 -1133667 + L1MEc LINE L1 1329 1583 -4632 2373 94 0 0 chr21 33773903 33774212 -1133358 - AluSc SINE Alu 0 309 1 2043 286 60 33 chr21 33774212 33774542 -1133028 + L1MEc LINE L1 1583 1903 -4312 1839 144 3 39 chr21 33774542 33774848 -1132722 + AluJb SINE Alu 1 295 -17 2043 286 60 33 chr21 33774848 33775737 -1131833 + L1MEc LINE L1 1903 2826 -3389 2386 59 3 13 chr21 33775737 33776042 -1131528 + AluY SINE Alu 1 302 -9 2043 286 60 33 chr21 33776042 33776248 -1131322 + L1MEc LINE L1 2826 3025 -3190 810 186 94 36 chr21 33776254 33776529 -1131041 - L1MCa LINE L1 -4093 3472 3182 892 243 49 15 chr21 33776533 33776861 -1130709 - L1M1 LINE L1 -4428 3137 2817 7892 211 35 15 chr21 33776984 33777590 -1129980 + L1MC3 LINE L1 5789 4846 -1320 1503 192 73 44 chr21 33777590 33777975 -1129595 - MSTD LTR MaLR 0 396 1 7892 211 35 15 chr21 33777975 33779306 -1128264 + L1MC3 LINE L1 4845 6148 -18 2148 96 13 20 chr21 33779322 33779625 -1127945 + AluSx SINE Alu 11 311 -1 288 147 118 0 chr21 33779664 33779732 -1127838 + L1ME LINE L1 5365 5440 -726 2157 91 0 23 chr21 33779737 33780045 -1127525 + AluY SINE Alu 5 305 -6 1947 133 0 0 chr21 33780143 33780422 -1127148 - AluSx SINE Alu -33 279 1 2091 113 3 0 chr21 33782435 33782728 -1124842 - AluSx SINE Alu -18 294 1 226 228 89 0 chr21 33791440 33791519 -1116051 + MLT1G LTR MaLR 203 288 -302 2214 76 41 0 chr21 33791625 33791916 -1115654 - AluY SINE Alu -8 303 1 250 222 0 0 chr21 33793056 33793119 -1114451 - L1MEc LINE L1 -3641 2574 2512 329 353 45 13 chr21 33793211 33793367 -1114203 - L1MEc LINE L1 -3752 2463 2303 2082 136 12 40 chr21 33793557 33793903 -1113667 - MER1B DNA MER1_type 0 337 2 2040 201 48 5 chr21 33794198 33794610 -1112960 + MER63B DNA MER1_type 3 432 -4 285 211 111 22 chr21 33795444 33795534 -1112036 - MLT1G1 LTR MaLR -485 110 13 2224 108 3 0 chr21 33795544 33795849 -1111721 + AluSp SINE Alu 1 306 -7 302 250 80 10 chr21 33795882 33795982 -1111588 - MLT1G1-int LTR MaLR -21 1714 1608 262 298 16 50 chr21 33796418 33796539 -1111031 - MLT1G1-int LTR MaLR -496 875 759 818 309 66 59 chr21 33797735 33798700 -1108870 - L1MEc LINE L1 -5402 994 23 335 312 95 38 chr21 33798711 33799268 -1108302 - L1MEc LINE L1 -4749 1561 913 2057 97 10 32 chr21 33799304 33799615 -1107955 + AluSx SINE Alu 1 304 -8 30 0 0 0 chr21 33799804 33799834 -1107736 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr21 33799887 33799908 -1107662 + GC_rich Low_complexity Low_complexity 1 21 0 369 151 22 86 chr21 33800439 33800578 -1106992 + (CGGGG)n Simple_repeat Simple_repeat 5 134 0 240 35 0 0 chr21 33800821 33800850 -1106720 + (CGGGGG)n Simple_repeat Simple_repeat 5 33 0 327 195 39 18 chr21 33801131 33801422 -1106148 + (CA)n Simple_repeat Simple_repeat 1 297 0 366 154 65 6 chr21 33801441 33801610 -1105960 + (CA)n Simple_repeat Simple_repeat 1 179 0 309 132 83 0 chr21 33801634 33801778 -1105792 + (CA)n Simple_repeat Simple_repeat 1 156 0 297 155 62 10 chr21 33801793 33801890 -1105680 + (CA)n Simple_repeat Simple_repeat 2 103 0 322 326 69 35 chr21 33802676 33802820 -1104750 + L1M4 LINE L1 3682 3830 -2316 946 96 45 6 chr21 33802841 33802998 -1104572 + MER51B LTR ERV1 1 163 -214 2567 58 89 0 chr21 33803225 33803551 -1104019 + THE1A LTR MaLR 1 355 0 1614 177 23 7 chr21 33804180 33804480 -1103090 - AluJo SINE Alu -2 310 6 453 324 7 0 chr21 33805446 33805591 -1101979 + (TG)n Simple_repeat Simple_repeat 1 146 0 2363 155 48 10 chr21 33806765 33807177 -1100393 - MSTA LTR MaLR 0 428 1 2242 68 7 0 chr21 33807188 33807497 -1100073 - AluY SINE Alu 0 311 1 2249 89 3 0 chr21 33807503 33807794 -1099776 - AluSp SINE Alu -21 292 1 869 109 0 68 chr21 33809552 33809699 -1097871 + AluSg/x SINE Alu 155 291 -19 1694 171 79 8 chr21 33809926 33810294 -1097276 + MSTB1 LTR MaLR 1 394 -38 2046 133 0 13 chr21 33811011 33811327 -1096243 - AluSx SINE Alu 0 312 1 366 176 11 11 chr21 33811940 33812031 -1095539 + L1ME LINE L1 5394 5484 -678 1509 213 7 13 chr21 33812037 33812342 -1095228 + AluJo SINE Alu 1 303 -9 5449 200 29 5 chr21 33812361 33814491 -1093079 - L1 LINE L1 -3353 3814 1634 4234 187 68 19 chr21 33814488 33815393 -1092177 - L1 LINE L1 -6123 1045 85 1995 132 0 35 chr21 33815393 33815703 -1091867 + AluSq SINE Alu 1 299 -14 4234 187 68 19 chr21 33815703 33815790 -1091780 - L1 LINE L1 -7083 85 4 539 150 125 0 chr21 33815795 33815915 -1091655 + Tigger3(Golem) DNA MER2_type 2738 2872 -157 334 224 53 0 chr21 33815909 33815985 -1091585 + Tigger3(Golem) DNA MER2_type 2793 2872 -157 312 247 52 0 chr21 33815979 33816056 -1091514 + Tigger3(Golem) DNA MER2_type 2793 2873 -156 324 224 53 0 chr21 33816049 33816125 -1091445 + Tigger3(Golem) DNA MER2_type 2793 2872 -157 394 145 58 0 chr21 33816119 33816188 -1091382 + Tigger3(Golem) DNA MER2_type 2793 2865 -164 331 224 53 0 chr21 33816259 33816335 -1091235 + Tigger3(Golem) DNA MER2_type 2793 2872 -157 317 231 51 0 chr21 33816328 33816406 -1091164 + Tigger3(Golem) DNA MER2_type 2792 2873 -156 295 247 52 0 chr21 33816399 33816476 -1091094 + Tigger3(Golem) DNA MER2_type 2793 2873 -156 278 250 53 0 chr21 33816470 33816546 -1091024 + Tigger3(Golem) DNA MER2_type 2794 2873 -156 353 174 58 0 chr21 33816539 33816608 -1090962 + Tigger3(Golem) DNA MER2_type 2793 2865 -164 322 203 58 0 chr21 33816612 33816681 -1090889 + Tigger3(Golem) DNA MER2_type 2800 2872 -157 365 197 53 0 chr21 33816675 33816751 -1090819 + Tigger3(Golem) DNA MER2_type 2793 2872 -157 343 211 53 0 chr21 33816745 33816821 -1090749 + Tigger3(Golem) DNA MER2_type 2793 2872 -157 375 169 52 0 chr21 33816814 33816891 -1090679 + Tigger3(Golem) DNA MER2_type 2792 2872 -157 1063 202 35 0 chr21 33816885 33817113 -1090457 + Tigger3(Golem) DNA MER2_type 2793 3028 -1 274 308 92 36 chr21 33817117 33817312 -1090258 + L1MB5 LINE L1 5804 6009 -165 438 181 42 12 chr21 33817338 33817504 -1090066 + GA-rich Low_complexity Low_complexity 2 172 0 1992 280 29 43 chr21 33817998 33818837 -1088733 - L1ME3 LINE L1 -2 6160 5334 286 304 60 70 chr21 33820002 33820082 -1087488 - L1ME3 LINE L1 -865 5281 5202 2125 109 10 16 chr21 33820082 33820394 -1087176 - AluSg SINE Alu 0 310 1 286 304 60 70 chr21 33820394 33820714 -1086856 - L1ME3 LINE L1 -944 5202 4885 657 271 50 8 chr21 33820804 33820992 -1086578 - L1ME3 LINE L1 -2166 3980 3778 1837 163 13 3 chr21 33820992 33821299 -1086271 - AluJo SINE Alu -2 310 1 657 271 50 8 chr21 33821299 33821350 -1086220 - L1ME3 LINE L1 -2368 3778 3731 622 374 63 17 chr21 33821523 33821873 -1085697 - L1ME3 LINE L1 -2715 3431 3066 482 318 83 24 chr21 33823545 33823815 -1083755 + L1MDa LINE L1 1229 1613 -4813 2325 69 0 0 chr21 33823999 33824287 -1083283 - AluY SINE Alu -21 290 3 2155 91 7 0 chr21 33824435 33824721 -1082849 + AluSq SINE Alu 1 288 -25 276 30 0 0 chr21 33824725 33824758 -1082812 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 410 323 119 25 chr21 33824839 33825189 -1082381 + L1ME LINE L1 5297 5672 -490 2482 44 0 0 chr21 33825545 33825841 -1081729 + AluY SINE Alu 1 296 -15 204 233 27 41 chr21 33827263 33827336 -1080234 + CT-rich Low_complexity Low_complexity 1 72 0 3420 162 22 75 chr21 33829214 33829942 -1077628 - LTR8 LTR ERV1 -2 689 1 489 284 35 42 chr21 33829987 33830288 -1077282 - MLT1G LTR MaLR -331 259 2 198 242 0 32 chr21 33830288 33830350 -1077220 + MIR SINE MIR 99 158 -104 227 188 42 0 chr21 33830353 33830401 -1077169 - MER116 DNA Mariner -28 52 3 1958 242 66 23 chr21 33830790 33831518 -1076052 - Charlie7 DNA MER1_type -122 2490 1732 4094 56 8 0 chr21 33831723 33832223 -1075347 + L1PA5 LINE L1 5647 6150 -4 1726 186 89 17 chr21 33833119 33833479 -1074091 + MLT1B LTR MaLR 1 386 -4 1247 153 4 52 chr21 33833668 33833845 -1073725 - AluJo SINE Alu -9 303 138 2262 104 0 3 chr21 33833845 33834152 -1073418 - AluSp SINE Alu -7 306 1 1247 153 4 52 chr21 33834152 33834203 -1073367 - AluJo SINE Alu -174 138 86 768 204 21 11 chr21 33834260 33834451 -1073119 + MLT1A2 LTR MaLR 175 367 -7 1210 139 0 0 chr21 33835400 33835573 -1071997 + AluJb SINE Alu 134 306 -6 7815 100 3 9 chr21 33835814 33837297 -1070273 - L1PA8A LINE L1 -3 6128 4652 2200 123 3 0 chr21 33837297 33837607 -1069963 + AluSx SINE Alu 1 311 -1 7815 100 3 9 chr21 33837607 33838032 -1069538 - L1PA8A LINE L1 -1479 4652 4226 3919 95 20 0 chr21 33838032 33838642 -1068928 + L1PA8A LINE L1 3611 4232 -1914 253 237 35 18 chr21 33838707 33838821 -1068749 - LTR16C LTR ERVL -13 478 363 296 367 30 21 chr21 33840132 33840629 -1066941 - MERVL LTR ERVL -765 4999 4456 345 278 83 28 chr21 33840629 33840809 -1066761 - MLT1F LTR MaLR 0 542 353 456 289 70 0 chr21 33841137 33841265 -1066305 - MLT1G LTR MaLR -439 151 15 1002 349 41 7 chr21 33842198 33842785 -1064785 - MERVL LTR ERVL -2305 3459 2853 303 67 40 40 chr21 33844188 33844263 -1063307 + (TG)n Simple_repeat Simple_repeat 1 75 0 254 106 21 0 chr21 33846750 33846797 -1060773 + (TC)n Simple_repeat Simple_repeat 2 49 0 781 148 8 0 chr21 33849097 33849219 -1058351 - FLAM_C SINE Alu -10 123 1 22 80 0 0 chr21 33850290 33850340 -1057230 + GC_rich Low_complexity Low_complexity 1 50 0 247 274 38 32 chr21 33850580 33850737 -1056833 + C-rich Low_complexity Low_complexity 3 160 0 302 267 0 70 chr21 33850635 33850770 -1056800 + (CCCCG)n Simple_repeat Simple_repeat 1 309 0 223 208 10 102 chr21 33850771 33850968 -1056602 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 34 0 0 0 chr21 33851080 33851114 -1056456 + GC_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr21 33851135 33851157 -1056413 + GC_rich Low_complexity Low_complexity 1 22 0 271 250 20 0 chr21 33851181 33851305 -1056265 + (CCG)n Simple_repeat Simple_repeat 1 126 0 32 81 0 0 chr21 33851454 33851528 -1056042 + GC_rich Low_complexity Low_complexity 1 74 0 29 47 0 0 chr21 33851734 33851777 -1055793 + GC_rich Low_complexity Low_complexity 1 43 0 474 18 0 0 chr21 33853522 33853577 -1053993 + (TC)n Simple_repeat Simple_repeat 2 56 0 351 0 0 0 chr21 33853576 33853615 -1053955 + (TG)n Simple_repeat Simple_repeat 2 40 0 720 147 0 0 chr21 33853921 33854037 -1053533 - MSTC LTR MaLR 0 428 313 1116 97 65 21 chr21 33854037 33854223 -1053347 - MSTC LTR MaLR -234 194 1 201 326 11 34 chr21 33854741 33854830 -1052740 - L2 LINE L2 -2 3270 3184 271 333 11 0 chr21 33854946 33855039 -1052531 - L2 LINE L2 -192 3080 2987 1680 169 94 50 chr21 33855235 33855715 -1051855 + MLT1D LTR MaLR 3 503 -2 308 295 91 12 chr21 33856106 33856347 -1051223 - L1M2 LINE L1 -782 5518 5259 2217 106 75 29 chr21 33856496 33856844 -1050726 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr21 33856863 33856885 -1050685 + AT_rich Low_complexity Low_complexity 1 22 0 384 264 45 34 chr21 33856893 33857071 -1050499 - L1M2 LINE L1 -1144 5002 4823 887 316 62 41 chr21 33857077 33857515 -1050055 - L1M4 LINE L1 -1929 4217 3763 1515 177 8 41 chr21 33857515 33857781 -1049789 + AluJb SINE Alu 1 257 -55 887 316 62 41 chr21 33857781 33857902 -1049668 - L1M4 LINE L1 -2383 3763 3646 1544 188 0 15 chr21 33857920 33858186 -1049384 - AluJo SINE Alu -13 299 38 319 229 34 25 chr21 33858309 33858427 -1049143 - MLT1I LTR MaLR -253 156 38 1247 216 22 8 chr21 33858415 33858683 -1048887 + MLT1E LTR MaLR 319 590 -3 697 261 72 21 chr21 33858789 33859263 -1048307 - L1ME4a LINE L1 -2 6188 5661 327 238 66 33 chr21 33859738 33859860 -1047710 - L1ME4a LINE L1 -2 6119 5994 238 297 0 62 chr21 33859861 33859911 -1047659 - L1ME4a LINE L1 -2346 3869 3817 2318 83 0 7 chr21 33859911 33860211 -1047359 - AluSx SINE Alu -14 298 1 238 297 0 62 chr21 33860211 33860288 -1047282 - L1ME4a LINE L1 -2398 3817 3750 1041 279 68 28 chr21 33860288 33860682 -1046888 - L1ME4a LINE L1 -3052 3163 2754 420 297 46 38 chr21 33860816 33861387 -1046183 - L1MEc LINE L1 -3624 2591 2066 365 337 16 42 chr21 33861660 33861807 -1045763 - L1MEc LINE L1 -4576 1820 1678 2473 83 0 0 chr21 33861807 33862107 -1045463 - AluSc SINE Alu -9 300 1 365 337 16 42 chr21 33862107 33862152 -1045418 - L1MEc LINE L1 -4718 1678 1633 2922 173 42 3 chr21 33862185 33862775 -1044795 - L1MB7 LINE L1 -21 6163 5551 1075 173 13 34 chr21 33862796 33863070 -1044500 - L1ME LINE L1 -575 5825 5560 6926 50 20 2 chr21 33863070 33864123 -1043447 + L1PA7 LINE L1 5084 6152 -2 3301 192 41 9 chr21 33864150 33864282 -1043288 - L1ME LINE L1 -810 5572 5446 2410 94 0 0 chr21 33864282 33864589 -1042981 - AluY SINE Alu -4 307 1 3301 192 41 9 chr21 33864589 33865254 -1042316 - L1ME LINE L1 -936 5446 4749 5928 224 57 27 chr21 33865252 33865784 -1041786 - L1ME LINE L1 -1868 4514 4000 2039 139 0 0 chr21 33865784 33866072 -1041498 - AluSx SINE Alu -24 288 1 5928 224 57 27 chr21 33866072 33866801 -1040769 - L1ME LINE L1 -2382 4000 3294 1863 164 0 25 chr21 33866801 33867119 -1040451 - AluJo SINE Alu -2 310 1 5928 224 57 27 chr21 33867119 33868044 -1039526 - L1ME LINE L1 -3088 3294 2259 2110 117 0 7 chr21 33868226 33868517 -1039053 + AluSx SINE Alu 2 290 -22 5069 120 40 22 chr21 33868616 33869639 -1037931 - L1PB4 LINE L1 -2 6154 5118 1318 159 16 72 chr21 33869639 33869890 -1037680 - AluJb SINE Alu -75 237 1 2470 173 42 13 chr21 33869890 33869955 -1037615 - L1PB4 LINE L1 -1028 5118 5056 7427 80 34 1 chr21 33869955 33870631 -1036939 + LTR13 LTR ERVK 1 720 -287 189 0 0 0 chr21 33870631 33870652 -1036918 + (TC)n Simple_repeat Simple_repeat 1 21 0 7427 80 34 1 chr21 33870652 33870950 -1036620 + LTR13 LTR ERVK 720 1007 0 2470 173 42 13 chr21 33870950 33871498 -1036072 - L1PB4 LINE L1 -1090 5056 4487 621 275 20 14 chr21 33871628 33871681 -1035889 + L1 LINE L1 2709 2760 -4805 197 33 33 0 chr21 33871681 33871711 -1035859 + (TAA)n Simple_repeat Simple_repeat 2 32 0 621 275 20 14 chr21 33871711 33871978 -1035592 + L1 LINE L1 2760 3054 -4511 25 0 0 0 chr21 33872059 33872084 -1035486 + AT_rich Low_complexity Low_complexity 1 25 0 2709 10 0 3 chr21 33872085 33872395 -1035175 - L1PA2 LINE L1 -1 6154 5846 1137 197 16 48 chr21 33872399 33872592 -1034978 - L1PB4 LINE L1 -1637 4509 4328 1676 195 3 24 chr21 33872592 33872889 -1034681 + AluJb SINE Alu 5 295 -17 1137 197 16 48 chr21 33872889 33873010 -1034560 - L1PB4 LINE L1 -1818 4328 4205 3941 190 6 7 chr21 33873004 33873818 -1033752 + L1PB4 LINE L1 4828 5640 -1925 1167 257 31 8 chr21 33873815 33874200 -1033370 - L1M4c LINE L1 -4480 2166 1773 664 146 0 0 chr21 33874200 33874303 -1033267 - AluSc SINE Alu -15 294 192 785 213 115 0 chr21 33874303 33874547 -1033023 - L1M4c LINE L1 -4868 1778 1507 403 138 23 11 chr21 33874547 33874634 -1032936 + CT-rich Low_complexity Low_complexity 1 88 0 819 177 0 0 chr21 33874652 33874776 -1032794 - FLAM_C SINE Alu -19 124 1 4742 213 70 53 chr21 33874776 33876272 -1031298 - L1M4c LINE L1 -5020 1522 2 336 311 73 7 chr21 33876281 33876432 -1031138 - L1MEc LINE L1 -4762 1959 1799 384 272 62 36 chr21 33876492 33876797 -1030773 - L1MEc LINE L1 -4866 1664 1352 4354 150 44 15 chr21 33876888 33877274 -1030296 - L1MB3 LINE L1 -7 6176 5803 369 0 0 0 chr21 33877274 33877315 -1030255 + (TA)n Simple_repeat Simple_repeat 2 42 0 4354 150 44 15 chr21 33877315 33877790 -1029780 - L1MB3 LINE L1 -380 5803 5290 961 195 87 0 chr21 33879058 33879289 -1028281 - MER90 LTR ERV1 -96 479 229 2503 129 86 0 chr21 33879445 33879839 -1027731 + MSTC LTR MaLR 1 428 0 982 241 60 12 chr21 33881611 33882018 -1025552 + LTR47B LTR ERVL 13 437 -6 3118 198 35 0 chr21 33883145 33883803 -1023767 + Charlie1a DNA MER1_type 16 696 -759 8233 131 37 9 chr21 33883813 33884231 -1023339 + Tigger1 DNA MER2_type 26 431 -1987 2008 133 33 3 chr21 33884231 33884531 -1023039 - AluSx SINE Alu -3 309 1 8233 131 37 9 chr21 33884531 33885526 -1022044 + Tigger1 DNA MER2_type 431 1478 -940 1021 91 0 0 chr21 33885528 33885660 -1021910 + AluYa8 SINE Alu 1 132 -178 1108 71 0 0 chr21 33885662 33885803 -1021767 + AluY SINE Alu 170 310 -1 5819 103 14 39 chr21 33885805 33886581 -1020989 + Tigger1 DNA MER2_type 1465 2214 -204 2289 104 13 7 chr21 33886581 33886889 -1020681 - AluSx SINE Alu -2 310 1 5819 103 14 39 chr21 33886889 33887089 -1020481 + Tigger1 DNA MER2_type 2214 2417 -1 3023 253 74 38 chr21 33887089 33888325 -1019245 - L1MB3 LINE L1 -877 5269 3971 1162 192 65 78 chr21 33888325 33888695 -1018875 - MLT1A1 LTR MaLR 0 365 1 3023 253 74 38 chr21 33888695 33888899 -1018671 - L1MB3 LINE L1 -2175 3971 3776 469 165 0 0 chr21 33888902 33888981 -1018589 - Tigger5 DNA MER2_type 0 2323 2245 683 218 6 17 chr21 33889099 33889278 -1018292 - L1MB3 LINE L1 -2377 3769 3593 277 240 125 0 chr21 33889270 33889374 -1018196 + L1MDb LINE L1 1191 1307 -5102 521 152 36 0 chr21 33889552 33889664 -1017906 - L1MEc LINE L1 -6146 394 279 1065 158 27 0 chr21 33889704 33889887 -1017683 - L1MEc LINE L1 -6334 206 19 2566 269 57 20 chr21 33889895 33890488 -1017082 - L2 LINE L2 -613 2701 2064 207 0 0 0 chr21 33890488 33890511 -1017059 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2566 269 57 20 chr21 33890511 33890795 -1016775 - L2 LINE L2 -1250 2064 1792 2306 64 7 0 chr21 33891132 33891415 -1016155 + AluY SINE Alu 20 304 -7 1580 155 71 34 chr21 33891424 33891721 -1015849 + AluJo SINE Alu 2 309 -3 2375 156 35 28 chr21 33891860 33892283 -1015287 + MSTB LTR MaLR 1 426 0 1717 127 23 19 chr21 33892593 33892900 -1014670 + L1MB3 LINE L1 5876 6183 0 264 264 36 9 chr21 33892928 33893038 -1014532 + L1ME1 LINE L1 304 416 -5956 216 0 0 0 chr21 33893344 33893368 -1014202 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2310 113 3 0 chr21 33893384 33893686 -1013884 - AluSx SINE Alu -9 303 1 680 245 75 16 chr21 33893959 33894334 -1013236 + L1ME1 LINE L1 945 1341 -5222 549 259 56 34 chr21 33894330 33894866 -1012704 + L1ME1 LINE L1 1209 1912 -4474 471 216 57 11 chr21 33894924 33895100 -1012470 + L1ME1 LINE L1 2318 2501 -4062 319 176 83 0 chr21 33895073 33895181 -1012389 + L1ME1 LINE L1 2434 2550 -3832 324 189 106 38 chr21 33895182 33895194 -1012376 + L1ME1 LINE L1 2617 2627 -3755 2235 105 0 7 chr21 33895194 33895499 -1012071 - AluY SINE Alu -8 303 1 324 189 106 38 chr21 33895499 33895618 -1011952 + L1ME1 LINE L1 2627 2757 -3625 355 265 7 0 chr21 33895636 33895772 -1011798 + L1ME1 LINE L1 2807 2943 -3439 227 163 0 0 chr21 33895789 33895832 -1011738 + L1ME1 LINE L1 3021 3063 -3319 797 275 13 13 chr21 33895902 33896131 -1011439 + L1ME1 LINE L1 3185 3413 -2969 1716 256 83 45 chr21 33896151 33897095 -1010475 + L1ME1 LINE L1 3445 4424 -1958 2807 202 86 25 chr21 33897136 33898234 -1009336 + L1ME1 LINE L1 4512 5680 -718 1042 265 30 24 chr21 33898243 33898613 -1008957 + L1ME1 LINE L1 5397 5768 -398 330 202 109 36 chr21 33898743 33898878 -1008692 + L1ME1 LINE L1 5958 6092 -70 241 206 14 14 chr21 33898881 33898954 -1008616 + (TA)n Simple_repeat Simple_repeat 1 73 0 3652 226 45 31 chr21 33899683 33900739 -1006831 + L1M4 LINE L1 3055 4125 -2021 863 276 94 7 chr21 33900736 33901044 -1006526 + L1ME1 LINE L1 6063 6397 -5 861 250 70 4 chr21 33901108 33901352 -1006218 + L1ME LINE L1 1555 1814 -4582 1167 254 63 5 chr21 33901716 33902098 -1005472 + L1ME LINE L1 2214 2617 -3598 322 286 17 0 chr21 33902109 33902228 -1005342 + L1ME LINE L1 4332 4452 -1763 393 362 45 28 chr21 33902232 33902591 -1004979 + L1ME LINE L1 4516 4880 -1335 630 250 11 17 chr21 33902621 33902801 -1004769 + LTR41 LTR ERVL 1 179 -594 613 227 58 72 chr21 33902926 33903204 -1004366 + LTR41 LTR ERVL 499 772 -1 1745 261 28 49 chr21 33903205 33903267 -1004303 + L1ME LINE L1 4915 4977 -1254 2526 75 0 3 chr21 33903267 33903575 -1003995 + AluSg SINE Alu 1 307 -3 1745 261 28 49 chr21 33903575 33903979 -1003591 + L1ME LINE L1 4977 5388 -843 2403 88 0 0 chr21 33903979 33904273 -1003297 + AluSc SINE Alu 1 294 -15 1745 261 28 49 chr21 33904273 33904794 -1002776 + L1ME LINE L1 5388 5887 -344 21 0 0 0 chr21 33904864 33904885 -1002685 + AT_rich Low_complexity Low_complexity 1 21 0 1778 179 0 32 chr21 33904932 33905240 -1002330 + AluJb SINE Alu 2 299 -13 2419 107 30 28 chr21 33907015 33907378 -1000192 - THE1B LTR MaLR 0 364 1 949 62 8 0 chr21 33907378 33907507 -1000063 - THE1B-int LTR MaLR 0 1580 1451 2345 202 79 43 chr21 33908848 33909036 -998534 - Charlie1 DNA MER1_type -4 2757 2577 2002 140 7 0 chr21 33909036 33909328 -998242 - AluSx SINE Alu -18 294 1 2345 202 79 43 chr21 33909328 33909871 -997699 - Charlie1 DNA MER1_type -184 2577 2000 7686 100 26 11 chr21 33909871 33910979 -996591 - Tigger1 DNA MER2_type -1 2417 1293 364 276 59 50 chr21 33910999 33911346 -996224 - L2 LINE L2 -491 2823 2434 309 233 122 0 chr21 33913122 33913212 -994358 - MER58C DNA MER1_type 0 215 115 318 229 105 9 chr21 33913627 33913732 -993838 + MER5B DNA MER1_type 7 121 -57 234 155 10 58 chr21 33913910 33914013 -993557 + CT-rich Low_complexity Low_complexity 4 101 0 309 211 202 18 chr21 33914644 33914702 -992868 - MER5A DNA MER1_type 0 189 143 2236 109 0 0 chr21 33914702 33915020 -992550 + AluSx SINE Alu 1 318 0 309 211 202 18 chr21 33915020 33915074 -992496 - MER5A DNA MER1_type -46 143 55 199 238 38 50 chr21 33915772 33915852 -991718 - MER5A DNA MER1_type -92 97 19 249 184 20 0 chr21 33916498 33916547 -991023 + MIR SINE MIR 92 141 -67 8642 174 52 60 chr21 33917044 33917629 -989941 - L1MC3 LINE L1 0 7995 7407 3458 25 0 5 chr21 33917629 33918033 -989537 - L1PA4 LINE L1 -8 6147 5746 8642 174 52 60 chr21 33918033 33919965 -987605 - L1MC3 LINE L1 -588 7407 5398 1698 166 0 66 chr21 33920161 33920493 -987077 - AluJb SINE Alu -2 310 1 661 249 81 0 chr21 33921601 33921798 -985772 + L2 LINE L2 2159 2371 -943 497 267 131 33 chr21 33922061 33922378 -985192 + L1ME LINE L1 5318 5659 -511 760 182 40 40 chr21 33922826 33923002 -984568 - L1MB7 LINE L1 -19 6663 6488 8910 202 41 27 chr21 33923016 33923828 -983742 - L1MB7 LINE L1 -588 6088 5289 1672 190 62 19 chr21 33923828 33924202 -983368 - MLT1B LTR MaLR 0 390 1 8910 202 41 27 chr21 33924202 33925940 -981630 - L1MB7 LINE L1 -1387 5289 3507 1305 224 16 37 chr21 33925939 33926261 -981309 - L1MB7 LINE L1 -6220 322 8 2078 119 57 41 chr21 33926904 33927273 -980297 + THE1C LTR MaLR 1 375 0 3217 49 3 0 chr21 33927551 33927937 -979633 - L1PA7 LINE L1 -12 6142 5756 321 79 16 79 chr21 33927937 33927998 -979572 + L1PA8 LINE L1 6114 6172 0 2366 103 0 0 chr21 33928599 33928900 -978670 + AluSx SINE Alu 1 301 -11 227 287 16 39 chr21 33929506 33929635 -977935 + L1P4 LINE L1 5679 5804 -370 1975 98 3 49 chr21 33930188 33930493 -977077 + AluSc SINE Alu 1 291 -18 241 278 178 26 chr21 33933642 33933872 -973698 - L2 LINE L2 -924 2390 2126 2063 216 25 28 chr21 33934253 33934817 -972753 - L1M4 LINE L1 -750 5465 4904 2343 152 56 14 chr21 33934871 33935353 -972217 - MER74A LTR ERVL -55 503 2 1910 257 61 19 chr21 33935629 33936354 -971216 - L1MEc LINE L1 -2065 4150 3396 3110 186 45 34 chr21 33936354 33937084 -970486 - L1MB5 LINE L1 -8 6166 5429 916 181 20 70 chr21 33937297 33937496 -970074 - AluJo SINE Alu -87 225 37 3021 229 48 22 chr21 33937531 33938643 -968927 - L1MEc LINE L1 -3005 3210 2103 1565 248 51 36 chr21 33939123 33939755 -967815 - L1MEc LINE L1 -4286 2110 1470 198 0 0 0 chr21 33940026 33940048 -967522 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1478 162 101 18 chr21 33940124 33940401 -967169 - AluJo SINE Alu -12 300 1 1519 274 64 53 chr21 33940499 33940748 -966822 - L1MEc LINE L1 -5224 1172 927 2375 77 6 16 chr21 33940748 33941059 -966511 - AluY SINE Alu -3 308 1 219 36 0 0 chr21 33941059 33941087 -966483 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 1766 146 0 0 chr21 33941088 33941335 -966235 - AluSx SINE Alu -31 281 35 1519 274 64 53 chr21 33941335 33941928 -965642 - L1MEc LINE L1 -5468 928 318 243 326 35 0 chr21 33943713 33943799 -963771 - MIR SINE MIR -84 124 36 2455 57 7 0 chr21 33945726 33946022 -961548 - AluY SINE Alu -13 298 1 21 0 0 0 chr21 33947829 33947850 -959720 + AT_rich Low_complexity Low_complexity 1 21 0 403 311 153 0 chr21 33947862 33948045 -959525 + HAL1 LINE L1 1 211 -2296 427 176 5 78 chr21 33948048 33948241 -959329 + (TG)n Simple_repeat Simple_repeat 1 179 0 663 224 105 58 chr21 33948850 33949145 -958425 + HAL1 LINE L1 2199 2507 0 22 0 0 0 chr21 33949165 33949187 -958383 + AT_rich Low_complexity Low_complexity 1 22 0 328 322 116 62 chr21 33949501 33949793 -957777 - L1MC/D LINE L1 -1986 5822 5515 775 289 118 62 chr21 33950055 33950708 -956862 - L1MC/D LINE L1 -1128 5018 4309 354 217 0 0 chr21 33951095 33951215 -956355 + (TTAGGG)n Simple_repeat Simple_repeat 6 125 0 236 100 25 0 chr21 33951587 33951627 -955943 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 36 0 0 chr21 33951650 33951678 -955892 + AT_rich Low_complexity Low_complexity 1 28 0 1410 195 59 7 chr21 33951678 33951965 -955605 - AluJo SINE Alu 0 302 1 23 33 0 0 chr21 33952295 33952325 -955245 + AT_rich Low_complexity Low_complexity 1 30 0 2414 123 19 6 chr21 33954482 33954841 -952729 - THE1B LTR MaLR 0 364 1 186 256 66 50 chr21 33956287 33956408 -951162 + MIR SINE MIR 22 144 -118 401 281 14 53 chr21 33957296 33957548 -950022 - L1MC4a LINE L1 -182 7671 7464 319 203 16 0 chr21 33957925 33957989 -949581 - L1MC4 LINE L1 -1017 7025 6961 237 177 48 16 chr21 33958007 33958069 -949501 + CT-rich Low_complexity Low_complexity 4 67 0 748 294 57 7 chr21 33958097 33958344 -949226 - L1MC4 LINE L1 -1133 6909 6645 198 0 0 0 chr21 33958344 33958366 -949204 + (TG)n Simple_repeat Simple_repeat 2 23 0 748 294 57 7 chr21 33958366 33958400 -949170 - L1MC4 LINE L1 -1397 6645 6614 500 178 40 0 chr21 33958793 33958894 -948676 - L1MB4 LINE L1 -1 6179 6075 845 264 128 23 chr21 33959049 33959488 -948082 - L1MB4 LINE L1 -2070 5738 5254 463 226 78 58 chr21 33959725 33960070 -947500 - L1MB4 LINE L1 -2953 3193 2842 26 64 0 0 chr21 33960080 33960127 -947443 + AT_rich Low_complexity Low_complexity 1 47 0 1472 147 56 35 chr21 33960340 33960625 -946945 + AluJo SINE Alu 22 312 0 353 261 35 29 chr21 33960729 33961030 -946540 - L1MB4 LINE L1 -3677 2469 2132 23 0 0 0 chr21 33961524 33961547 -946023 + AT_rich Low_complexity Low_complexity 1 23 0 457 252 67 29 chr21 33962180 33962418 -945152 - L1MEc LINE L1 -4784 1612 1366 587 207 27 27 chr21 33962431 33962596 -944974 - L1ME1 LINE L1 0 6184 6011 2238 237 29 44 chr21 33962652 33963996 -943574 - L1MB1 LINE L1 -248 5920 4558 4053 192 68 33 chr21 33964038 33965356 -942214 - L1MB7 LINE L1 -18 6166 4687 1850 107 45 10 chr21 33965356 33965645 -941925 - AluSx SINE Alu -13 299 1 4053 192 68 33 chr21 33965645 33966335 -941235 - L1MB7 LINE L1 -1497 4687 4023 460 222 80 17 chr21 33966351 33966527 -941043 - L1MB7 LINE L1 -2178 3968 3782 858 225 54 38 chr21 33966537 33966853 -940717 - L1MB7 LINE L1 -2400 3746 3426 866 268 89 25 chr21 33967052 33967474 -940096 + L1ME LINE L1 1034 1428 -4701 406 65 226 0 chr21 33967474 33967536 -940034 - MADE1 DNA Mariner 0 80 5 866 268 89 25 chr21 33967536 33967638 -939932 + L1ME LINE L1 1428 1586 -4543 979 194 6 0 chr21 33967638 33967808 -939762 - FAM SINE Alu -4 171 1 866 268 89 25 chr21 33967808 33967827 -939743 + L1ME LINE L1 1586 1602 -4527 2146 76 38 3 chr21 33968272 33968560 -939010 + AluSq SINE Alu 1 298 -15 390 238 40 32 chr21 33969513 33969639 -937931 - MLT1E1 LTR MaLR -8 646 520 652 264 25 86 chr21 33969696 33969946 -937624 - MLT1F1 LTR MaLR -271 296 67 1699 118 62 42 chr21 33969946 33970252 -937318 - AluSx SINE Alu 0 312 1 652 264 25 86 chr21 33970252 33970316 -937254 - MLT1F1 LTR MaLR -500 67 1 2376 80 3 0 chr21 33971578 33971890 -935680 - AluSp SINE Alu 0 313 1 759 226 139 84 chr21 33973731 33974076 -933494 + MLT1A2 LTR MaLR 2 365 0 2623 191 80 15 chr21 33974515 33975106 -932464 - L1MB5 LINE L1 -1 6173 5545 253 224 132 0 chr21 33975107 33975183 -932387 - MIR SINE MIR -96 166 81 252 319 21 32 chr21 33978822 33978916 -928654 + L3 LINE CR1 903 995 -582 1759 255 43 2 chr21 33978933 33979446 -928124 + L1ME LINE L1 3820 4353 -1776 4584 160 15 19 chr21 33979454 33980698 -926872 - L1MA4A LINE L1 -5 7000 5704 1020 138 5 25 chr21 33980722 33980918 -926652 - L1MA4A LINE L1 -1107 5741 5550 645 114 38 0 chr21 33980903 33981008 -926562 - L1M LINE L1 -890 5413 5305 9632 202 38 40 chr21 33981021 33981591 -925979 - L1MA4A LINE L1 -1308 5540 4971 2025 93 59 14 chr21 33981591 33981880 -925690 + AluSc SINE Alu 1 302 -7 9632 202 38 40 chr21 33981880 33982868 -924702 - L1MA4A LINE L1 -1877 4971 3983 1620 166 6 34 chr21 33982868 33983188 -924382 - AluJo SINE Alu -1 311 1 9632 202 38 40 chr21 33983188 33984357 -923213 - L1MA4A LINE L1 -2865 3983 2812 9641 205 30 27 chr21 33984358 33986483 -921087 - L1MA4A LINE L1 -4054 2795 665 2222 243 16 4 chr21 33986580 33987065 -920505 - L1MA4A LINE L1 -6356 493 3 838 217 83 4 chr21 33987070 33987310 -920260 + L1ME LINE L1 4354 4612 -1517 2092 237 47 39 chr21 33987318 33987778 -919792 + L1ME LINE L1 4703 5173 -1002 4863 168 22 21 chr21 33987778 33988678 -918892 + MER54A LTR ERVL 1 901 0 2092 237 47 39 chr21 33988678 33988941 -918629 + L1ME LINE L1 5173 5432 -743 707 217 109 36 chr21 33988948 33989169 -918401 + L1ME LINE L1 5462 5698 -451 321 194 0 0 chr21 33989172 33989234 -918336 + L1ME LINE L1 5722 5783 -366 560 235 104 44 chr21 33989324 33989507 -918063 - L1ME1 LINE L1 -187 5979 5786 286 291 64 67 chr21 33989678 33990272 -917298 + L1MEc LINE L1 876 1467 -4929 371 238 55 15 chr21 33990627 33990786 -916784 - L1P5 LINE L1 -690 5461 5299 239 279 12 12 chr21 33990800 33990886 -916684 + HAL1b LINE L1 403 488 -860 6726 60 10 26 chr21 33991935 33993595 -913975 + SVA Other Other 35 1350 -36 246 32 0 0 chr21 33993595 33993626 -913944 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 6726 60 10 26 chr21 33993626 33993662 -913908 + SVA Other Other 1350 1385 -1 2127 120 0 0 chr21 33993758 33994059 -913511 - AluSq SINE Alu -12 301 1 1732 142 0 40 chr21 33994723 33995025 -912545 - AluJo SINE Alu -22 290 1 221 314 0 4 chr21 33996630 33996877 -910693 + (TG)n Simple_repeat Simple_repeat 1 245 0 347 282 106 74 chr21 33996987 33997326 -910244 - L2 LINE L2 -287 2985 2625 2364 57 0 3 chr21 33997326 33997626 -909944 + AluY SINE Alu 1 299 -12 347 282 106 74 chr21 33997626 33997842 -909728 - L2 LINE L2 -647 2625 2417 324 324 134 16 chr21 33997886 33998465 -909105 - L2 LINE L2 -996 2318 1643 288 337 134 14 chr21 33998743 33999034 -908536 - L2 LINE L2 -1987 1327 1002 455 308 6 0 chr21 34001187 34001356 -906214 + HAL1 LINE L1 1491 1660 -847 936 221 0 0 chr21 34001708 34001889 -905681 + AluJo SINE Alu 107 287 -25 2351 68 0 0 chr21 34002116 34002411 -905159 + AluY SINE Alu 1 295 -16 204 217 0 0 chr21 34002772 34002818 -904752 + T-rich Low_complexity Low_complexity 3 48 0 394 353 73 77 chr21 34003093 34003792 -903778 + L1 LINE L1 3071 3766 -2380 451 323 58 66 chr21 34003813 34004270 -903300 - HAL1b LINE L1 -1104 3199 1 365 262 66 0 chr21 34004478 34004600 -902970 + L1MC4 LINE L1 7741 7870 -172 213 132 0 0 chr21 34004713 34004751 -902819 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 396 322 11 11 chr21 34004769 34004949 -902621 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 232 248 8 8 chr21 34005002 34005131 -902439 + (TGGA)n Simple_repeat Simple_repeat 1 129 0 358 280 3 16 chr21 34005143 34005467 -902103 + (TGGA)n Simple_repeat Simple_repeat 1 319 0 289 265 0 18 chr21 34005479 34005768 -901802 + (TGGA)n Simple_repeat Simple_repeat 1 283 0 282 238 0 18 chr21 34005866 34006030 -901540 + (TGGA)n Simple_repeat Simple_repeat 1 161 0 363 314 25 8 chr21 34006634 34006752 -900818 + L1MC4 LINE L1 7923 8042 0 1289 170 206 4 chr21 34006767 34007044 -900526 + MER44D DNA MER2_type 1 603 -6 10237 72 7 0 chr21 34014520 34016659 -890911 + L1PA7 LINE L1 4003 6143 -11 735 273 43 0 chr21 34017253 34017440 -890130 + MLT1E1 LTR MaLR 3 197 -457 633 226 81 24 chr21 34017508 34017687 -889883 - L1MEc LINE L1 -2180 4035 3868 279 71 0 0 chr21 34017687 34017729 -889841 + (TG)n Simple_repeat Simple_repeat 1 42 0 1533 148 0 82 chr21 34017729 34018033 -889537 - AluJo SINE Alu -33 279 1 633 226 81 24 chr21 34018033 34018100 -889470 - L1MEc LINE L1 -2346 3869 3774 645 292 93 37 chr21 34018309 34018631 -888939 - L1MEc LINE L1 -2685 3530 3191 663 253 41 13 chr21 34018663 34019012 -888558 - MLT1E2 LTR MaLR -30 475 74 531 304 51 13 chr21 34019020 34019497 -888073 - L1MEc LINE L1 -3690 2525 2072 441 248 67 40 chr21 34019501 34019650 -887920 - L1MEc LINE L1 -4341 2055 1903 860 106 16 0 chr21 34019652 34019775 -887795 - MER4D LTR ERV1 -2 870 746 1016 287 50 70 chr21 34019781 34019887 -887683 - L1MEc LINE L1 -4595 1801 1694 1929 92 51 0 chr21 34019887 34020160 -887410 - AluSx SINE Alu -25 287 1 1016 287 50 70 chr21 34020160 34020911 -886659 - L1MEc LINE L1 -4702 1694 966 2163 106 0 7 chr21 34020911 34021212 -886358 - AluSx SINE Alu -13 299 1 1016 287 50 70 chr21 34021212 34021375 -886195 - L1MEc LINE L1 -5430 966 801 2189 154 19 8 chr21 34021388 34021759 -885811 - Tigger3b DNA MER2_type -1 1230 856 680 34 108 0 chr21 34021771 34022093 -885477 + (TGAG)n Simple_repeat Simple_repeat 1 358 0 778 6 107 0 chr21 34022107 34023001 -884569 + (TGAG)n Simple_repeat Simple_repeat 1 989 0 729 0 112 0 chr21 34023025 34023186 -884384 + (TGAG)n Simple_repeat Simple_repeat 1 179 0 1366 118 56 43 chr21 34023186 34023200 -884370 - Tigger3b DNA MER2_type -2148 880 868 757 7 106 0 chr21 34023200 34023617 -883953 + (TGAG)n Simple_repeat Simple_repeat 1 461 0 1366 118 56 43 chr21 34023617 34023895 -883675 - Tigger3b DNA MER2_type -2160 868 578 512 86 0 57 chr21 34023896 34024001 -883569 + (TCCCC)n Simple_repeat Simple_repeat 1 99 0 2764 196 15 7 chr21 34024001 34024548 -883022 - Tigger3b DNA MER2_type -679 552 2 1387 196 103 40 chr21 34025325 34025491 -882079 - L1MC2 LINE L1 -1 6343 6189 2203 81 7 0 chr21 34025491 34025788 -881782 - AluY SINE Alu -12 299 1 1387 196 103 40 chr21 34025788 34026018 -881552 - L1MC2 LINE L1 -155 6189 5922 368 207 12 12 chr21 34026001 34026083 -881487 - L1MC1 LINE L1 -704 5629 5548 3717 188 55 0 chr21 34026083 34026774 -880796 + L1MC1 LINE L1 5596 6325 -8 895 224 43 9 chr21 34030218 34030450 -877120 - L1MC3 LINE L1 -289 7496 7257 2132 121 0 6 chr21 34031196 34031510 -876060 - AluSx SINE Alu 0 312 1 2089 84 49 0 chr21 34033458 34033742 -873828 + AluSp SINE Alu 1 298 -15 271 348 43 18 chr21 34033848 34034012 -873558 + L1ME2 LINE L1 5830 5997 -167 1484 280 70 31 chr21 34033992 34034478 -873092 + L1MDa LINE L1 20 524 -6016 1039 282 98 24 chr21 34034650 34035108 -872462 + L1MDa LINE L1 865 1356 -5184 1098 169 5 5 chr21 34038704 34038905 -868665 + AluJb SINE Alu 110 310 -2 3589 120 96 29 chr21 34039078 34039186 -868384 - MER41B LTR ERV1 0 635 536 2049 123 0 0 chr21 34039186 34039479 -868091 - AluSx SINE Alu -19 293 1 3589 120 96 29 chr21 34039479 34039963 -867607 - MER41B LTR ERV1 -99 536 3 2402 98 52 30 chr21 34040179 34040546 -867024 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr21 34044204 34044227 -863343 + AT_rich Low_complexity Low_complexity 1 23 0 451 308 113 42 chr21 34044364 34044712 -862858 - L1ME LINE L1 -309 5812 5429 295 267 78 0 chr21 34044713 34044803 -862767 + MLT1G1 LTR MaLR 38 134 -461 497 238 7 28 chr21 34045333 34045476 -862094 - L1MC5 LINE L1 -728 7233 7094 352 284 53 0 chr21 34045479 34045574 -861996 - L1MC5 LINE L1 -865 7096 6997 482 242 62 71 chr21 34045736 34045867 -861703 - L1MC5 LINE L1 -1102 6859 6729 180 0 0 0 chr21 34045867 34045887 -861683 + (TAA)n Simple_repeat Simple_repeat 1 20 0 482 242 62 71 chr21 34045887 34045995 -861575 - L1MC5 LINE L1 -1232 6729 6622 30 77 0 0 chr21 34046015 34046080 -861490 + AT_rich Low_complexity Low_complexity 1 65 0 317 291 79 69 chr21 34046100 34046303 -861267 - L1MC4a LINE L1 -1327 6481 6277 2037 117 72 65 chr21 34047097 34047152 -860418 + Tigger3(Golem) DNA MER2_type 2285 2338 -690 2262 101 0 10 chr21 34047152 34047450 -860120 - AluSq SINE Alu -13 300 6 2037 117 72 65 chr21 34047450 34047639 -859931 + Tigger3(Golem) DNA MER2_type 2338 2524 -504 2490 72 0 16 chr21 34047639 34047945 -859625 + AluY SINE Alu 1 301 -10 2037 117 72 65 chr21 34047945 34048160 -859410 + Tigger3(Golem) DNA MER2_type 2524 2748 -280 1294 197 40 0 chr21 34048160 34048383 -859187 - AluJb SINE Alu -80 232 1 1537 151 29 18 chr21 34048390 34048669 -858901 + Tigger3(Golem) DNA MER2_type 2747 3028 -1 330 394 31 6 chr21 34048699 34048859 -858711 - HAL1b LINE L1 -1184 164 1 213 39 0 0 chr21 34049858 34049884 -857686 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 1136 278 60 3 chr21 34049959 34050311 -857259 - L1MDa LINE L1 -5353 1187 816 844 259 25 5 chr21 34050533 34050730 -856840 - L1MDa LINE L1 -6320 220 20 545 299 101 56 chr21 34050852 34051137 -856433 - L1 LINE L1 -2983 3163 2863 190 207 0 36 chr21 34052271 34052411 -855159 + (TA)n Simple_repeat Simple_repeat 1 135 0 358 318 0 23 chr21 34052916 34053089 -854481 + (TG)n Simple_repeat Simple_repeat 1 169 0 224 333 0 26 chr21 34053105 34053222 -854348 + (TG)n Simple_repeat Simple_repeat 2 115 0 322 340 66 68 chr21 34053834 34054228 -853342 - L1 LINE L1 -3372 2774 2382 617 319 52 19 chr21 34054991 34055358 -852212 - HAL1b LINE L1 -766 582 204 1567 151 79 3 chr21 34055531 34055822 -851748 - MER51B LTR ERV1 -2 375 63 358 179 65 68 chr21 34055880 34056022 -851548 - MER51A LTR ERV1 -236 141 1 2158 97 7 26 chr21 34056667 34056975 -850595 - AluSx SINE Alu -10 302 1 35 24 0 0 chr21 34057080 34057122 -850448 + AT_rich Low_complexity Low_complexity 1 42 0 435 304 90 42 chr21 34058368 34058702 -848868 + L1M4 LINE L1 2864 3181 -2965 2265 102 10 0 chr21 34058702 34058995 -848575 + AluSg SINE Alu 1 296 -14 435 304 90 42 chr21 34058995 34059076 -848494 + L1M4 LINE L1 3181 3257 -2889 288 77 0 0 chr21 34059076 34059115 -848455 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 435 304 90 42 chr21 34059115 34059409 -848161 + L1M4 LINE L1 3257 3608 -2538 1477 164 42 0 chr21 34059429 34059715 -847855 + L1MA6 LINE L1 6002 6299 -1 494 222 20 0 chr21 34060224 34060323 -847247 + MLT1D LTR MaLR 350 450 -55 294 223 87 19 chr21 34060365 34060468 -847102 + L1M LINE L1 5313 5422 -2386 1609 103 12 4 chr21 34060822 34061065 -846505 - MER51A LTR ERV1 -1 633 389 294 161 36 0 chr21 34061036 34061092 -846478 - MER51B LTR ERV1 -272 105 48 304 171 171 13 chr21 34061082 34061158 -846412 - MER51A LTR ERV1 -546 88 1 747 243 48 19 chr21 34061736 34062108 -845462 - L1MB5 LINE L1 -2 6181 5777 358 225 0 0 chr21 34062173 34062253 -845317 - L1MB5 LINE L1 -1727 4419 4340 2698 181 13 33 chr21 34063317 34063863 -843707 + MER4E LTR ERV1 2 536 -243 2021 185 41 17 chr21 34063863 34064132 -843438 + MSTB LTR MaLR 1 285 -141 4664 116 44 4 chr21 34064132 34064881 -842689 - MER4E LTR ERV1 0 779 1 2021 185 41 17 chr21 34064881 34065027 -842543 + MSTB LTR MaLR 285 426 0 1014 181 84 26 chr21 34065029 34065255 -842315 + MER4E LTR ERV1 541 779 0 601 253 28 6 chr21 34065575 34065757 -841813 - MER4C LTR ERV1 0 465 280 929 184 50 110 chr21 34065785 34066149 -841421 - MER4A LTR ERV1 -322 342 1 2643 90 0 6 chr21 34066190 34066556 -841014 + THE1B LTR MaLR 1 364 0 249 100 150 17 chr21 34067991 34068051 -839519 + L1MC4a LINE L1 6731 6798 -1010 773 225 59 119 chr21 34069302 34069689 -837881 - MLT1A1 LTR MaLR -1 364 1 260 296 30 68 chr21 34073567 34073699 -833871 + MER5A DNA MER1_type 1 127 -62 203 298 0 0 chr21 34074241 34074298 -833272 + C-rich Low_complexity Low_complexity 1 57 0 198 71 0 0 chr21 34075874 34075902 -831668 + (T)n Simple_repeat Simple_repeat 1 28 0 370 296 86 65 chr21 34077414 34077705 -829865 - L1M3c LINE L1 -4796 1345 1049 1234 168 180 0 chr21 34081263 34081519 -826051 - AluJb SINE Alu 0 302 1 529 55 0 0 chr21 34081523 34081596 -825974 - AluJ/FLAM SINE Alu -238 74 2 424 284 69 35 chr21 34081752 34081964 -825606 - L1MDa LINE L1 -1554 4872 4650 1706 81 8 13 chr21 34081964 34082198 -825372 - AluSg/x SINE Alu -2 308 76 424 284 69 35 chr21 34082198 34082217 -825353 - L1MDa LINE L1 -1776 4650 4633 2061 119 39 7 chr21 34084991 34085277 -822293 + AluSq SINE Alu 1 295 -18 546 269 78 8 chr21 34086415 34086450 -821120 + L1MDa LINE L1 1238 1269 -5271 180 0 0 0 chr21 34086450 34086470 -821100 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1735 167 7 3 chr21 34086472 34086754 -820816 - AluJo SINE Alu -29 283 1 546 269 78 8 chr21 34086754 34086957 -820613 + L1MDa LINE L1 1269 1496 -5044 1167 247 68 19 chr21 34086969 34087438 -820132 + L1MDa LINE L1 3065 3556 -2984 267 270 10 40 chr21 34088047 34088147 -819423 - L2 LINE L2 -15 3257 3161 669 275 50 32 chr21 34088508 34088788 -818782 - L1MDa LINE L1 -2120 4306 4022 417 62 78 0 chr21 34088793 34088857 -818713 - L1MA7 LINE L1 -75 6216 6148 692 214 45 7 chr21 34088857 34089011 -818559 - AluJo SINE Alu -106 206 47 283 149 0 0 chr21 34089015 34089062 -818508 + FLAM SINE Alu 86 132 -1 3838 186 52 13 chr21 34089065 34090382 -817188 - L1MA8 LINE L1 -162 6129 4759 3023 247 30 18 chr21 34090381 34091395 -816175 - L1MDa LINE L1 -3010 3416 2380 1902 171 13 7 chr21 34091395 34091705 -815865 - AluJo SINE Alu 0 312 1 3023 247 30 18 chr21 34091705 34091881 -815689 - L1MDa LINE L1 -4046 2380 2208 304 269 30 0 chr21 34091907 34091974 -815596 - L1MDa LINE L1 -4363 2063 1995 206 182 0 23 chr21 34091975 34092019 -815551 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 1360 130 5 15 chr21 34092045 34092245 -815325 - AluJb SINE Alu -27 285 88 3888 220 120 28 chr21 34092245 34093594 -813976 - L1MDa LINE L1 -4212 2328 856 1836 260 98 5 chr21 34094122 34094776 -812794 - L1MDa LINE L1 -5794 746 32 350 360 71 10 chr21 34094817 34095014 -812556 + MIR SINE MIR 19 227 -35 806 320 64 28 chr21 34098572 34099075 -808495 + L1ME1 LINE L1 5494 6014 -152 381 257 35 0 chr21 34099437 34099550 -808020 - LTR24B LTR ERV1 -2 574 458 21 71 0 0 chr21 34102348 34102390 -805180 + AT_rich Low_complexity Low_complexity 1 42 0 229 167 42 0 chr21 34105124 34105172 -802398 - L1MC4 LINE L1 -1168 6874 6825 266 161 204 32 chr21 34107781 34107874 -799696 + MIR SINE MIR 35 143 -65 802 111 0 13 chr21 34109103 34109256 -798314 + (GA)n Simple_repeat Simple_repeat 1 151 0 495 211 72 30 chr21 34109390 34109556 -798014 - MER89 LTR ERV1 0 559 387 5736 225 47 27 chr21 34110021 34111906 -795664 - MER89-int LTR ERV1 -195 6606 4654 1688 256 23 7 chr21 34111931 34112373 -795197 - MER89-int LTR ERV1 -2104 4697 4249 931 300 37 53 chr21 34112377 34112863 -794707 - MER89-int LTR ERV1 -2510 4291 3814 1477 212 52 0 chr21 34112976 34113321 -794249 - MLT1B LTR MaLR 0 390 28 661 320 100 12 chr21 34113410 34113844 -793726 - MER89-int LTR ERV1 -4019 2782 171 1508 282 96 68 chr21 34114012 34115927 -791643 - MER89-int LTR ERV1 -4277 2524 458 191 342 114 0 chr21 34122630 34122744 -784826 - MIR SINE MIR -72 190 64 258 193 0 0 chr21 34127284 34127341 -780229 + (TG)n Simple_repeat Simple_repeat 1 57 0 439 220 0 76 chr21 34127991 34128123 -779447 + MLT1A1 LTR MaLR 1 122 -306 688 271 4 31 chr21 34128171 34128400 -779170 + MLT1A1 LTR MaLR 142 364 -1 1991 126 3 10 chr21 34129031 34129325 -778245 + AluSx SINE Alu 1 292 -20 1775 182 0 3 chr21 34129769 34130066 -777504 + AluJo SINE Alu 1 296 -16 314 339 101 30 chr21 34132857 34133025 -774545 + L1MDa LINE L1 2419 2598 -3942 404 263 105 66 chr21 34133057 34133272 -774298 + L1MDa LINE L1 2597 2831 -3709 22 0 0 0 chr21 34133302 34133324 -774246 + AT_rich Low_complexity Low_complexity 1 22 0 1679 219 58 0 chr21 34133602 34133995 -773575 + Tigger3b DNA MER2_type 1 416 -815 310 265 98 20 chr21 34134449 34134551 -773019 + L1M LINE L1 5255 5364 -995 357 158 0 32 chr21 34134760 34134855 -772715 + CT-rich Low_complexity Low_complexity 3 94 0 268 308 143 8 chr21 34134975 34135108 -772462 - MIR3 SINE MIR -47 161 11 181 214 48 0 chr21 34135262 34135304 -772266 - MIR3 SINE MIR -54 154 111 206 222 0 0 chr21 34137638 34137683 -769887 + (CTGGGG)n Simple_repeat Simple_repeat 5 49 0 204 167 0 0 chr21 34148412 34148460 -759110 + (CGGGA)n Simple_repeat Simple_repeat 2 49 0 572 278 62 38 chr21 34152603 34152894 -754676 - MLT1A1 LTR MaLR -38 327 30 937 293 91 26 chr21 34152938 34153477 -754093 + MLT1E LTR MaLR 3 576 -17 2145 94 7 3 chr21 34154386 34154696 -752874 - AluSq SINE Alu 0 313 4 376 243 40 75 chr21 34154732 34154905 -752665 - MER69 DNA AcHobo -1503 1023 857 2062 98 14 10 chr21 34157123 34157419 -750151 + AluJb SINE Alu 1 297 -15 274 223 101 72 chr21 34158925 34159064 -748506 - L1MCc LINE L1 -5999 424 282 369 239 42 0 chr21 34159140 34159267 -748303 - L1MCa LINE L1 -5860 324 50 1825 210 76 9 chr21 34159267 34159714 -747856 - LTR39 LTR ERV1 0 794 318 689 194 16 65 chr21 34159742 34159853 -747717 - LTR39 LTR ERV1 -570 224 124 3008 36 20 0 chr21 34159853 34160210 -747360 - L1PA4 LINE L1 -3 6152 5789 689 194 16 65 chr21 34160210 34160284 -747286 - LTR39 LTR ERV1 -670 124 48 3413 79 77 12 chr21 34160525 34161007 -746563 - LTR10D LTR ERV1 0 513 1 4314 122 44 3 chr21 34161348 34161979 -745591 + PABL_A LTR ERV1 4 660 0 772 249 105 46 chr21 34162236 34162521 -745049 - L1M4 LINE L1 -2800 3346 3045 1036 157 0 0 chr21 34162523 34162682 -744888 - FRAM SINE Alu 0 40 1 1760 119 93 16 chr21 34162682 34163211 -744359 - LTR10E LTR ERV1 0 633 6 836 173 6 36 chr21 34163211 34163379 -744191 - AluJo SINE Alu -149 163 1 306 245 10 59 chr21 34164109 34164150 -743420 + HERVL40 LTR ERVL 5432 5473 -57 2224 182 41 10 chr21 34164150 34164563 -743007 - MSTB LTR MaLR 0 426 1 306 245 10 59 chr21 34164563 34164623 -742947 + HERVL40 LTR ERVL 5473 5528 -2 1164 212 71 83 chr21 34164626 34165046 -742524 + LTR40a LTR ERVL 2 416 -103 1897 157 3 0 chr21 34165222 34165521 -742049 + AluJo SINE Alu 9 308 -4 603 244 75 42 chr21 34166493 34166706 -740864 + L1M4 LINE L1 4945 5164 -982 652 330 72 5 chr21 34166766 34167155 -740415 + L1M4 LINE L1 5293 5706 -468 2681 91 8 6 chr21 34167979 34168342 -739228 - THE1B LTR MaLR 0 364 1 857 94 51 0 chr21 34168342 34168480 -739090 - THE1B-int LTR MaLR 0 1580 1436 7898 98 44 17 chr21 34168472 34169739 -737831 - THE1B-int LTR MaLR -278 1302 1 1655 78 0 4 chr21 34169739 34169970 -737600 - THE1B LTR MaLR 0 364 135 1661 156 14 7 chr21 34169970 34170310 -737260 - MER61C LTR ERV1 0 434 1 965 106 0 0 chr21 34170310 34170448 -737122 - THE1B LTR MaLR -226 138 1 383 337 79 6 chr21 34170461 34170639 -736931 - MIR SINE MIR -52 210 20 440 299 73 10 chr21 34170747 34171035 -736535 + L1MC4a LINE L1 4381 4686 -1460 2479 133 78 5 chr21 34171209 34171607 -735963 + MSTA LTR MaLR 1 427 -1 10393 154 24 9 chr21 34171608 34173234 -734336 + MSTA-int LTR MaLR 1 1651 0 2286 131 36 72 chr21 34173234 34173630 -733940 + MSTA LTR MaLR 1 381 -47 2282 109 0 3 chr21 34173630 34173943 -733627 - AluSq SINE Alu -1 312 1 2286 131 36 72 chr21 34173943 34173990 -733580 + MSTA LTR MaLR 381 428 0 259 226 0 0 chr21 34174023 34174085 -733485 + L1P LINE L1 4900 4961 -1185 898 144 189 9 chr21 34174144 34174366 -733204 + MER21A LTR ERV1 3 264 -667 1941 202 126 14 chr21 34174371 34174871 -732699 + MER21A LTR ERV1 376 931 0 232 291 57 14 chr21 34174874 34175015 -732555 + L1MC4a LINE L1 4964 5110 -1036 359 182 30 91 chr21 34175129 34175257 -732313 + L1MC4a LINE L1 5254 5367 -2441 2712 10 0 0 chr21 34175257 34175559 -732011 + AluYa5 SINE Alu 1 302 -9 359 182 30 91 chr21 34175559 34175628 -731942 + L1MC4a LINE L1 5367 5439 -2369 385 279 57 27 chr21 34175741 34176384 -731186 + L1MC4a LINE L1 5610 6303 -1505 1847 129 30 20 chr21 34176384 34176679 -730891 + AluSx SINE Alu 1 298 -14 385 279 57 27 chr21 34176679 34176750 -730820 + L1MC4a LINE L1 6303 6370 -1438 26 30 0 0 chr21 34176754 34176787 -730783 + AT_rich Low_complexity Low_complexity 1 33 0 546 265 19 0 chr21 34176787 34176947 -730623 + L1MC4a LINE L1 6319 6514 -1294 1503 248 39 31 chr21 34176995 34177378 -730192 + MLT1B LTR MaLR 1 386 -4 465 188 10 23 chr21 34177443 34177573 -729997 - LTR24 LTR ERV1 0 467 308 473 261 153 0 chr21 34177598 34177774 -729796 + L1MC4 LINE L1 7446 7648 -394 265 302 84 8 chr21 34179554 34179673 -727897 - MIR3 SINE MIR -76 132 5 225 0 0 0 chr21 34181134 34181159 -726411 + (T)n Simple_repeat Simple_repeat 1 25 0 9102 49 2 2 chr21 34183134 34184205 -723365 - MER11C LTR ERVK 0 1071 1 249 33 0 0 chr21 34184502 34184532 -723038 + (TGGGGG)n Simple_repeat Simple_repeat 1 30 0 271 205 26 17 chr21 34184708 34184825 -722745 + CT-rich Low_complexity Low_complexity 6 123 0 507 186 39 0 chr21 34185268 34185424 -722146 + GA-rich Low_complexity Low_complexity 2 163 0 406 245 4 41 chr21 34185454 34185742 -721828 + G-rich Low_complexity Low_complexity 1 277 0 307 236 13 17 chr21 34185749 34185990 -721580 + GA-rich Low_complexity Low_complexity 1 240 0 2293 86 0 0 chr21 34186262 34186553 -721017 + AluSx SINE Alu 5 295 -17 1814 148 4 4 chr21 34187379 34187656 -719914 + AluJb SINE Alu 1 277 -35 285 98 0 0 chr21 34187677 34187718 -719852 + (GGA)n Simple_repeat Simple_repeat 3 43 0 209 98 24 0 chr21 34188013 34188054 -719516 + (TC)n Simple_repeat Simple_repeat 2 43 0 817 71 49 29 chr21 34188057 34188411 -719159 + (TCTCTG)n Simple_repeat Simple_repeat 1 361 0 822 81 11 43 chr21 34188422 34188607 -718963 + (TCTCTG)n Simple_repeat Simple_repeat 2 180 0 743 89 30 18 chr21 34189070 34189238 -718332 + (TCCCC)n Simple_repeat Simple_repeat 3 172 0 233 200 22 0 chr21 34191236 34191281 -716289 + MIR SINE MIR 100 145 -117 507 71 106 0 chr21 34192122 34192235 -715335 + (CAGAGA)n Simple_repeat Simple_repeat 2 126 0 795 73 48 24 chr21 34192258 34192423 -715147 + (CAGAGA)n Simple_repeat Simple_repeat 4 172 0 324 351 54 60 chr21 34192425 34192940 -714630 + L1M4c LINE L1 795 1306 -5078 321 280 35 35 chr21 34196142 34196285 -711285 + Charlie8 DNA MER1_type 51 193 -2224 374 302 17 34 chr21 34197942 34198121 -709449 + (GGGTG)n Simple_repeat Simple_repeat 5 180 0 255 241 18 54 chr21 34198906 34199018 -708552 + G-rich Low_complexity Low_complexity 2 109 0 253 264 11 11 chr21 34208085 34208176 -699394 + G-rich Low_complexity Low_complexity 3 93 0 439 199 0 75 chr21 34213400 34213586 -693984 + G-rich Low_complexity Low_complexity 3 174 0 378 216 0 79 chr21 34213694 34213884 -693686 + G-rich Low_complexity Low_complexity 3 177 0 198 309 52 41 chr21 34214178 34214275 -693295 + MIR SINE MIR 85 182 -80 1798 154 70 54 chr21 34215448 34215499 -692071 - THE1C LTR MaLR 0 375 326 2433 57 3 16 chr21 34215499 34215814 -691756 - AluY SINE Alu 0 311 1 1798 154 70 54 chr21 34215814 34216131 -691439 - THE1C LTR MaLR -49 326 1 382 221 121 0 chr21 34217970 34218110 -689460 + MLT1E1 LTR MaLR 428 584 -70 631 236 0 0 chr21 34219202 34219329 -688241 + (TG)n Simple_repeat Simple_repeat 1 127 0 726 162 12 52 chr21 34219717 34219890 -687680 + L1MC4 LINE L1 7689 7854 -188 1713 259 66 6 chr21 34220313 34221398 -686172 - L1ME LINE L1 -464 5771 4611 1038 223 22 15 chr21 34221412 34221685 -685885 - MSTB2 LTR MaLR 0 457 183 1347 260 64 30 chr21 34221718 34222394 -685176 - L1ME LINE L1 -1630 4585 3887 4492 180 33 38 chr21 34222416 34223811 -683759 - L1MD1 LINE L1 -8 6628 5245 338 202 219 10 chr21 34223810 34223976 -683594 - L1MD1 LINE L1 -4963 1577 1379 942 128 0 14 chr21 34223976 34224124 -683446 - AluSg/x SINE Alu 0 310 165 2340 247 47 52 chr21 34224124 34225372 -682198 - L1MD1 LINE L1 -5157 1383 4 1545 170 57 7 chr21 34225409 34225691 -681879 + AluJb SINE Alu 1 296 -16 320 342 106 24 chr21 34225725 34225979 -681591 - L1ME LINE L1 -3994 2402 2128 1241 241 50 66 chr21 34226037 34226414 -681156 - MLT1A2 LTR MaLR 0 374 4 1793 137 14 7 chr21 34226566 34226858 -680712 - AluSx SINE Alu -18 294 1 303 300 58 17 chr21 34227518 34227638 -679932 - MIR3 SINE MIR -69 139 15 242 359 0 0 chr21 34228266 34228330 -679240 + MIR SINE MIR 2 65 -197 2638 48 0 0 chr21 34228529 34228840 -678730 + AluY SINE Alu 1 311 0 289 252 50 40 chr21 34230115 34230214 -677356 - MLT1L LTR MaLR -338 277 178 320 342 20 14 chr21 34230695 34230841 -676729 - MIR SINE MIR -85 177 31 488 319 39 11 chr21 34231562 34231744 -675826 + L1ME LINE L1 5638 5824 -297 1500 240 58 13 chr21 34231750 34232455 -675115 + L1ME3 LINE L1 5409 6162 0 225 200 147 11 chr21 34233587 34233682 -673888 + L1M3de LINE L1 1820 1927 -4726 3502 232 55 25 chr21 34233957 34234789 -672781 + L1ME LINE L1 3692 4576 -1570 2012 115 49 0 chr21 34234789 34235076 -672494 - AluSx SINE Alu -11 301 1 3502 232 55 25 chr21 34235076 34235507 -672063 + L1ME LINE L1 4576 4993 -1153 776 168 0 0 chr21 34235510 34235629 -671941 + FLAM_A SINE Alu 5 123 -10 337 325 24 16 chr21 34236646 34236772 -670798 - MIR SINE MIR -62 146 20 433 307 169 0 chr21 34237159 34237348 -670222 + HAL1 LINE L1 1450 1670 -837 1311 190 141 25 chr21 34238080 34238407 -669163 + MLT1A1 LTR MaLR 1 365 0 2215 105 0 0 chr21 34238585 34238881 -668689 - AluSc SINE Alu -12 297 2 301 371 0 0 chr21 34239131 34239228 -668342 - L1MC/D LINE L1 -2203 5839 5743 710 316 0 0 chr21 34239331 34239543 -668027 - L1MC/D LINE L1 -708 5470 5259 881 254 19 19 chr21 34239546 34239759 -667811 - L1MC/D LINE L1 -891 5255 5043 828 270 35 4 chr21 34239765 34240024 -667546 - L1MC/D LINE L1 -1134 5012 4746 280 164 49 0 chr21 34240097 34240158 -667412 - MSTB LTR MaLR -360 66 3 509 237 42 53 chr21 34240162 34240352 -667218 + MLT1D LTR MaLR 267 454 -51 315 268 8 8 chr21 34240387 34240510 -667060 + L1ME LINE L1 5352 5474 -859 280 335 35 23 chr21 34240760 34240933 -666637 + L1ME LINE L1 5557 5731 -435 290 205 0 71 chr21 34246927 34246966 -660604 - MER63 DNA MER1_type -52 1009 969 2196 89 10 0 chr21 34246966 34247257 -660313 - AluSx SINE Alu -16 296 3 290 205 0 71 chr21 34247257 34247329 -660241 - MER63 DNA MER1_type -92 969 906 2368 138 25 3 chr21 34248297 34248653 -658917 + THE1B LTR MaLR 1 364 0 284 211 0 13 chr21 34249078 34249154 -658416 + L1MD2 LINE L1 1625 1699 -4841 203 204 0 58 chr21 34249329 34249466 -658104 + (CACAC)n Simple_repeat Simple_repeat 1 129 0 2003 240 100 39 chr21 34249481 34249601 -657969 + L1MD2 LINE L1 1660 1771 -4769 1780 147 48 7 chr21 34249601 34249893 -657677 + AluSx SINE Alu 1 304 -8 2003 240 100 39 chr21 34249893 34249932 -657638 + L1MD2 LINE L1 1771 1806 -4734 1711 111 0 0 chr21 34249932 34250166 -657404 - AluSq SINE Alu -79 234 1 2003 240 100 39 chr21 34250166 34250850 -656720 + L1MD2 LINE L1 1806 2447 -4093 1568 204 10 3 chr21 34250850 34251158 -656412 + AluJb SINE Alu 1 310 -2 2003 240 100 39 chr21 34251158 34251398 -656172 + L1MD2 LINE L1 2447 2671 -3869 1794 53 84 30 chr21 34251398 34251660 -655910 + AluY SINE Alu 21 296 -15 2003 240 100 39 chr21 34251660 34251951 -655619 + L1MD2 LINE L1 2671 3118 -3422 767 161 0 0 chr21 34251986 34252104 -655466 + FLAM_C SINE Alu 1 118 -25 2087 255 70 39 chr21 34252112 34253158 -654412 + L1MD2 LINE L1 3139 4216 -2324 827 219 30 99 chr21 34253151 34253516 -654054 + L1MD2 LINE L1 6129 6491 -69 753 193 48 31 chr21 34253520 34253748 -653822 + L1MD3 LINE L1 7764 7995 0 907 144 0 20 chr21 34253751 34253897 -653673 + FLAM_C SINE Alu 1 143 0 749 323 45 18 chr21 34253908 34254304 -653266 + L1ME2 LINE L1 5328 5734 -430 2166 112 0 10 chr21 34254358 34254670 -652900 - AluSx SINE Alu -2 310 2 346 319 76 7 chr21 34254709 34254853 -652717 + L1ME2 LINE L1 5893 6046 -118 653 216 14 0 chr21 34256352 34256491 -651079 + L1ME1 LINE L1 6015 6155 -11 1240 277 58 24 chr21 34258932 34259430 -648140 + Charlie1 DNA MER1_type 2228 2742 -19 372 229 38 0 chr21 34259991 34260096 -647474 + MLT1B LTR MaLR 247 355 -35 857 280 88 0 chr21 34260859 34261177 -646393 - L1ME LINE L1 -401 5763 5418 219 69 0 0 chr21 34261195 34261224 -646346 + (CA)n Simple_repeat Simple_repeat 2 30 0 765 248 78 40 chr21 34261224 34261567 -646003 - L1ME LINE L1 -1351 4795 4434 1965 142 3 3 chr21 34261567 34261876 -645694 - AluJb SINE Alu -3 309 1 765 248 78 40 chr21 34261876 34261928 -645642 - L1ME LINE L1 -1712 4434 4385 189 247 0 0 chr21 34262369 34262466 -645104 + CT-rich Low_complexity Low_complexity 3 99 0 229 295 8 16 chr21 34262479 34262601 -644969 + CT-rich Low_complexity Low_complexity 3 123 0 993 104 0 80 chr21 34263113 34263276 -644294 + AluJb SINE Alu 1 150 -162 247 213 16 0 chr21 34265494 34265555 -642015 - LTR37B LTR ERV1 0 468 407 3626 129 45 36 chr21 34268865 34269578 -637992 + LTR8A LTR ERV1 1 719 -8 527 215 0 0 chr21 34270919 34271026 -636544 - MER57A LTR ERV1 -162 241 135 376 226 0 38 chr21 34271072 34271178 -636392 - Tigger5 DNA MER2_type 0 2323 2222 255 280 75 11 chr21 34271219 34271312 -636258 - MER57A LTR ERV1 -304 99 1 2182 212 17 15 chr21 34271728 34272195 -635375 + L1MB5 LINE L1 5700 6167 -7 611 171 8 0 chr21 34272195 34272324 -635246 + GA-rich Low_complexity Low_complexity 4 133 0 305 310 66 20 chr21 34275641 34275838 -631732 - MERVL LTR ERVL -617 4868 4663 642 242 0 0 chr21 34276039 34276813 -630757 + (TG)n Simple_repeat Simple_repeat 1 774 0 615 228 0 0 chr21 34276835 34277015 -630555 + (TG)n Simple_repeat Simple_repeat 1 180 0 535 316 53 0 chr21 34277104 34277294 -630276 - L1MC4a LINE L1 -1225 6583 6384 2136 115 0 31 chr21 34277914 34278236 -629334 + AluSx SINE Alu 1 312 0 221 238 48 16 chr21 34278965 34279028 -628542 + MIR3 SINE MIR 8 72 -136 839 192 37 11 chr21 34279078 34279265 -628305 - MLT1A1 LTR MaLR -2 363 172 430 105 0 0 chr21 34279748 34279805 -627765 + Alu SINE Alu 1 57 -253 1354 95 91 69 chr21 34279871 34280103 -627467 + AluSg/x SINE Alu 66 302 -10 2740 265 52 40 chr21 34280103 34281239 -626331 + L1M4 LINE L1 2294 3415 -2731 1917 112 0 83 chr21 34281239 34281578 -625992 - AluJb SINE Alu -1 311 1 2740 265 52 40 chr21 34281578 34281775 -625795 + L1M4 LINE L1 3415 3608 -2538 2049 121 0 3 chr21 34281775 34282065 -625505 - AluSx SINE Alu -23 289 1 2740 265 52 40 chr21 34282065 34282540 -625030 + L1M4 LINE L1 3608 4342 -1804 298 184 184 35 chr21 34282600 34282687 -624883 + AluJ/FLAM SINE Alu 3 102 -200 8130 122 4 0 chr21 34282687 34284775 -622795 + L1PA10 LINE L1 4085 6158 -10 295 134 104 0 chr21 34284799 34284866 -622704 - MLT1B LTR MaLR -193 197 124 818 209 39 0 chr21 34285622 34285828 -621742 + MLT1B LTR MaLR 26 239 -151 603 240 0 0 chr21 34287215 34287438 -620132 + (CA)n Simple_repeat Simple_repeat 1 223 0 280 320 0 0 chr21 34289486 34289564 -618006 - MIR SINE MIR -115 147 70 909 225 14 3 chr21 34293486 34293775 -613795 + L1M4 LINE L1 3150 3441 -2705 889 273 55 27 chr21 34293812 34294492 -613078 + L1M4 LINE L1 3535 4199 -1947 2470 131 5 21 chr21 34294492 34294873 -612697 - THE1C LTR MaLR 0 375 1 889 273 55 27 chr21 34294873 34295008 -612562 + L1M4 LINE L1 4199 4329 -1817 553 254 6 6 chr21 34295024 34295189 -612381 + L1M4 LINE L1 313 477 -6362 1187 225 24 43 chr21 34295184 34295558 -612012 + L1MB7 LINE L1 5818 6184 0 442 302 65 29 chr21 34295854 34296414 -611156 + L1M4 LINE L1 1279 2052 -4879 596 316 49 7 chr21 34296416 34296720 -610850 + L1M4 LINE L1 2109 2425 -4697 410 247 33 71 chr21 34296720 34296902 -610668 + MLT1F LTR MaLR 6 180 -362 205 162 0 0 chr21 34297597 34297634 -609936 + (TGG)n Simple_repeat Simple_repeat 2 38 0 1295 272 39 21 chr21 34297634 34298130 -609440 + MLT1H LTR MaLR 2 549 0 588 200 24 31 chr21 34298130 34298389 -609181 + (ATGGTG)n Simple_repeat Simple_repeat 1 257 0 1287 105 0 3 chr21 34298389 34298971 -608599 + (TGG)n Simple_repeat Simple_repeat 1 761 0 263 320 40 20 chr21 34301173 34301273 -606297 + MIR3 SINE MIR 58 159 -49 1460 310 84 8 chr21 34301566 34302297 -605273 - HERV16 LTR ERVL -1902 3094 2524 917 287 10 7 chr21 34302532 34302828 -604742 - HERV16 LTR ERVL -2786 2210 1914 325 330 85 0 chr21 34303002 34303178 -604392 - HERV16 LTR ERVL -3832 1164 974 270 309 29 37 chr21 34303855 34303991 -603579 - HERV16 LTR ERVL -4797 199 65 233 265 0 0 chr21 34304445 34304513 -603057 + (CA)n Simple_repeat Simple_repeat 1 68 0 352 180 31 0 chr21 34304526 34304687 -602883 + (CA)n Simple_repeat Simple_repeat 2 167 0 24 32 0 0 chr21 34305335 34305366 -602204 + GC_rich Low_complexity Low_complexity 1 31 0 224 225 0 79 chr21 34305431 34305520 -602050 + C-rich Low_complexity Low_complexity 2 83 0 2372 54 6 19 chr21 34306668 34306981 -600589 + AluSx SINE Alu 1 309 -3 207 0 0 0 chr21 34307388 34307411 -600159 + (T)n Simple_repeat Simple_repeat 1 23 0 1122 136 40 15 chr21 34307572 34307801 -599769 - AluJb SINE Alu 0 312 88 198 0 0 0 chr21 34307809 34307831 -599739 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 8705 201 39 29 chr21 34307889 34311286 -596284 - L1MB3 LINE L1 -2 6181 2750 5552 138 34 15 chr21 34311294 34312594 -594976 + L1M4c LINE L1 407 1914 -4468 1729 172 0 28 chr21 34312594 34312906 -594664 + AluJb SINE Alu 1 304 0 5552 138 34 15 chr21 34312906 34313724 -593846 + L1M4c LINE L1 1914 2716 -3666 578 238 146 44 chr21 34313816 34314022 -593548 + MIR SINE MIR 8 234 -28 5209 117 22 13 chr21 34314738 34315508 -592062 + MER4E LTR ERV1 1 777 -2 240 254 28 0 chr21 34315551 34315622 -591948 + CT-rich Low_complexity Low_complexity 2 74 0 247 224 92 0 chr21 34315642 34315740 -591830 - L1M4 LINE L1 -1906 4240 4134 3323 209 73 80 chr21 34316298 34317576 -589994 - MER52A LTR ERV1 0 1278 46 297 177 16 0 chr21 34317731 34317793 -589777 - MER52A LTR ERV1 -1692 63 1 1079 158 0 0 chr21 34320867 34321038 -586532 - AluJ SINE Alu -4 308 138 328 100 0 0 chr21 34321039 34321089 -586481 + AluJ/F(R)AM SINE Alu 152 201 -101 815 110 31 8 chr21 34321094 34321221 -586349 - AluJ SINE Alu -182 130 1 2448 69 0 3 chr21 34321643 34321948 -585622 + AluSc SINE Alu 1 304 -5 318 50 0 0 chr21 34324415 34324455 -583115 + (CA)n Simple_repeat Simple_repeat 2 41 0 560 260 16 0 chr21 34331004 34331329 -576241 + (TGGG)n Simple_repeat Simple_repeat 1 330 0 667 225 14 0 chr21 34331335 34331790 -575780 + (TGGA)n Simple_repeat Simple_repeat 1 461 0 215 229 21 0 chr21 34331792 34331840 -575730 + (TGGG)n Simple_repeat Simple_repeat 4 52 0 591 330 70 0 chr21 34335389 34335589 -571981 - L1M4 LINE L1 -2296 3850 3637 434 211 53 0 chr21 34336301 34336434 -571136 - MER67B LTR ERV1 -511 150 11 485 181 26 43 chr21 34341713 34341815 -565755 - MLT1C LTR MaLR -308 159 58 212 57 0 29 chr21 34341815 34341850 -565720 + (TTGGGG)n Simple_repeat Simple_repeat 1 34 0 485 181 26 43 chr21 34341850 34341863 -565707 - MLT1C LTR MaLR -409 58 46 203 138 7 103 chr21 34343220 34343365 -564205 + C-rich Low_complexity Low_complexity 1 131 0 1731 166 20 0 chr21 34345390 34345686 -561884 - AluJb SINE Alu -8 304 3 1422 204 7 37 chr21 34348650 34348944 -558626 - AluJo SINE Alu -27 285 1 3495 125 10 111 chr21 34349673 34350536 -557034 - pTR5 LTR ERV1 -3 2448 1352 755 175 10 27 chr21 34350776 34350882 -556688 + CT-rich Low_complexity Low_complexity 1 107 -1337 6529 125 44 13 chr21 34350882 34351859 -555711 + LTR13 LTR ERVK 1 1007 0 755 175 10 27 chr21 34351859 34352244 -555326 + CT-rich Low_complexity Low_complexity 107 1444 0 252 282 7 35 chr21 34353210 34353352 -554218 + C-rich Low_complexity Low_complexity 1 138 0 2233 104 0 22 chr21 34355154 34355470 -552100 + AluSg1 SINE Alu 1 309 0 1458 252 85 51 chr21 34355573 34355839 -551731 + L1MC4 LINE L1 7214 7470 -572 1585 184 32 23 chr21 34355839 34356148 -551422 + AluJo SINE Alu 1 312 0 1458 252 85 51 chr21 34356148 34356620 -550950 + L1MC4 LINE L1 7470 7977 -65 981 216 15 0 chr21 34364025 34364224 -543346 - AluJ SINE Alu -1 311 110 1780 97 110 7 chr21 34364224 34364533 -543037 + THE1B LTR MaLR 1 341 -23 838 115 0 0 chr21 34364543 34364656 -542914 - AluJ SINE Alu -199 113 1 2459 64 0 0 chr21 34364666 34364964 -542606 - AluY SINE Alu -3 308 11 776 225 34 19 chr21 34365386 34365595 -541975 + MLT1B LTR MaLR 163 374 -16 1138 257 44 58 chr21 34366746 34367311 -540259 + MER74B LTR ERVL 66 622 0 210 206 0 48 chr21 34368472 34368535 -539035 + G-rich Low_complexity Low_complexity 4 63 0 2123 95 3 3 chr21 34370088 34370384 -537186 - AluSx SINE Alu -16 296 1 3302 205 36 37 chr21 34370527 34371492 -536078 - L1M4 LINE L1 -714 5464 4499 1788 176 0 19 chr21 34371492 34371810 -535760 - AluJb SINE Alu 0 312 1 3302 205 36 37 chr21 34371810 34371860 -535710 - L1M4 LINE L1 -1679 4499 4450 2407 76 0 0 chr21 34372009 34372312 -535258 + AluSg SINE Alu 1 303 -7 813 271 18 14 chr21 34372439 34372716 -534854 + L1M4 LINE L1 3192 3469 -2677 1141 169 219 47 chr21 34372717 34373055 -534515 + LTR44 LTR ERV1 1 396 -123 230 239 15 45 chr21 34373056 34373123 -534447 + LTR44 LTR ERV1 341 405 -114 894 166 47 0 chr21 34373193 34373362 -534208 + LTR44 LTR ERV1 343 519 0 436 250 56 7 chr21 34373364 34373508 -534062 + L1M4 LINE L1 3472 3622 -2524 454 128 43 0 chr21 34373489 34373583 -533987 + L1M1 LINE L1 3481 3578 -3987 2162 120 0 0 chr21 34373584 34373875 -533695 + AluSx SINE Alu 4 294 -18 4271 192 22 26 chr21 34373934 34375030 -532540 + L1M1 LINE L1 3561 4651 -2914 1183 152 0 62 chr21 34375030 34375254 -532316 + AluJo SINE Alu 1 210 -102 1428 203 24 16 chr21 34375271 34375650 -531920 + L1M4 LINE L1 4964 5345 -801 643 71 0 0 chr21 34378858 34378943 -528627 + AluY SINE Alu 214 298 -13 608 383 54 32 chr21 34379101 34379511 -528059 + L1M1 LINE L1 4755 5173 -2392 3635 189 37 1 chr21 34380198 34380903 -526667 + L1PA13 LINE L1 4 733 -6054 1094 152 10 10 chr21 34381339 34381543 -526027 + L1PA13 LINE L1 1394 1597 -5190 2114 127 0 16 chr21 34381543 34381858 -525712 + AluSx SINE Alu 1 310 -2 15467 147 22 10 chr21 34381858 34385449 -522121 + L1PA13 LINE L1 2836 6476 -338 2306 88 7 0 chr21 34385449 34385754 -521816 + AluSq SINE Alu 1 307 -6 15467 147 22 10 chr21 34385754 34386097 -521473 + L1PA13 LINE L1 6476 6813 -1 2089 136 0 0 chr21 34386102 34386404 -521166 + AluSx SINE Alu 1 302 -10 1641 141 17 34 chr21 34386463 34386754 -520816 + AluJo SINE Alu 10 295 -17 772 151 56 0 chr21 34386761 34386887 -520683 + FLAM_C SINE Alu 1 133 0 523 304 124 0 chr21 34392727 34392888 -514682 - L1 LINE L1 -2349 3797 3617 643 132 70 0 chr21 34393076 34393190 -514380 + L1MC1 LINE L1 6212 6333 0 974 214 0 5 chr21 34393341 34393528 -514042 + AluJb SINE Alu 104 289 -23 340 167 39 0 chr21 34393542 34393620 -513950 + L1MC/D LINE L1 5153 5233 -913 979 151 0 7 chr21 34393641 34393793 -513777 - FRAM SINE Alu -24 152 2 989 158 0 6 chr21 34393795 34393966 -513604 - L1MC1 LINE L1 -129 6204 6035 1151 56 0 0 chr21 34393967 34394110 -513460 + AluY SINE Alu 154 296 -15 1333 102 80 0 chr21 34394110 34394335 -513235 + L1MC/D LINE L1 5325 5567 -766 2456 64 0 6 chr21 34394335 34394648 -512922 - AluY SINE Alu 0 311 1 1333 188 103 54 chr21 34394654 34394808 -512762 - L1M4 LINE L1 -819 5327 5182 1577 182 7 7 chr21 34394808 34395088 -512482 - AluJb SINE Alu -20 292 13 1333 188 103 54 chr21 34395088 34395379 -512191 - L1M4 LINE L1 -964 5182 4860 823 284 107 18 chr21 34395366 34395823 -511747 - L1M4 LINE L1 -3311 2835 2338 234 381 0 0 chr21 34400005 34400102 -507468 + (TG)n Simple_repeat Simple_repeat 1 97 0 268 346 6 33 chr21 34400036 34400218 -507352 + (TATG)n Simple_repeat Simple_repeat 4 180 0 312 373 0 27 chr21 34400151 34400336 -507234 + (TG)n Simple_repeat Simple_repeat 1 180 0 275 390 4 14 chr21 34400351 34400570 -507000 + (TG)n Simple_repeat Simple_repeat 1 216 0 324 371 6 11 chr21 34400601 34400779 -506791 + (TG)n Simple_repeat Simple_repeat 2 178 0 424 346 6 11 chr21 34400819 34400998 -506572 + (TG)n Simple_repeat Simple_repeat 1 178 0 375 350 6 11 chr21 34401061 34401238 -506332 + (TG)n Simple_repeat Simple_repeat 1 176 0 202 394 0 0 chr21 34401301 34401405 -506165 + (TG)n Simple_repeat Simple_repeat 1 104 0 309 383 0 0 chr21 34401420 34401574 -505996 + (TG)n Simple_repeat Simple_repeat 1 154 0 1436 157 78 41 chr21 34402796 34403112 -504458 + AluJo SINE Alu 1 312 0 328 353 67 17 chr21 34404087 34404206 -503364 + HAL1b LINE L1 73 197 -1151 1037 230 16 12 chr21 34404415 34404667 -502903 + MLT1E LTR MaLR 341 593 0 473 295 48 17 chr21 34404726 34405021 -502549 + L1MC1 LINE L1 3344 3647 -2499 478 271 131 51 chr21 34405027 34405105 -502465 + L1MC1 LINE L1 3674 3744 -2402 2317 82 13 3 chr21 34405105 34405411 -502159 + AluY SINE Alu 2 310 -1 478 271 131 51 chr21 34405411 34405546 -502024 + L1MC1 LINE L1 3744 3904 -2242 1414 158 4 4 chr21 34405552 34405780 -501790 + AluJo SINE Alu 72 299 -13 515 188 42 12 chr21 34405783 34405948 -501622 + L1MC1 LINE L1 4321 4490 -1656 2972 203 51 12 chr21 34405949 34407384 -500186 + L1MC1 LINE L1 4561 6090 -243 532 211 46 56 chr21 34407411 34407618 -499952 + L1MC2 LINE L1 6169 6344 0 1416 200 169 103 chr21 34407666 34408471 -499099 + L1MC4 LINE L1 7043 7900 -142 2332 55 10 0 chr21 34409297 34409590 -497980 - AluY SINE Alu -14 297 2 2753 13 0 0 chr21 34409610 34409919 -497651 + AluYa5 SINE Alu 1 309 -2 1658 182 30 3 chr21 34410100 34410396 -497174 + AluJo SINE Alu 1 304 -8 237 308 92 0 chr21 34410543 34410673 -496897 - MIR SINE MIR -87 175 34 1976 136 0 13 chr21 34411514 34411823 -495747 + AluSx SINE Alu 7 311 -1 296 164 0 0 chr21 34412079 34412140 -495430 + Alu SINE Alu 242 302 0 295 345 25 16 chr21 34412150 34412469 -495101 + L1P LINE L1 3478 3799 -2347 509 241 15 7 chr21 34412555 34412713 -494857 + L1ME LINE L1 5610 5769 -393 2336 79 0 7 chr21 34417558 34417863 -489707 - AluSg1 SINE Alu -6 303 1 2175 91 0 10 chr21 34418628 34418926 -488644 - AluY SINE Alu -16 295 1 220 172 17 17 chr21 34419538 34419596 -487974 + (CAGGG)n Simple_repeat Simple_repeat 4 61 0 442 276 37 12 chr21 34424280 34424443 -483127 + L1MD3 LINE L1 7828 7994 -1 2192 89 16 7 chr21 34424466 34424770 -482800 + AluSx SINE Alu 5 311 -1 2092 105 17 0 chr21 34425844 34426139 -481431 + AluSx SINE Alu 1 300 -12 2259 97 0 3 chr21 34426223 34426522 -481048 - AluSc SINE Alu -11 298 1 1614 176 11 14 chr21 34428860 34429144 -478426 - AluJo SINE Alu -18 294 12 8003 57 21 3 chr21 34431002 34431991 -475579 + LTR13 LTR ERVK 1 1007 0 215 262 50 38 chr21 34432129 34432209 -475361 - MIR SINE MIR -56 152 72 699 161 15 51 chr21 34432327 34432464 -475106 + AluJo/FLAM SINE Alu 2 133 -169 911 130 1 38 chr21 34432464 34432513 -475057 + AluSp SINE Alu 134 183 -130 8659 42 0 7 chr21 34432513 34433527 -474043 + LTR13 LTR ERVK 1 1007 0 911 130 1 38 chr21 34433527 34433659 -473911 + AluSp SINE Alu 183 273 -40 250 130 0 0 chr21 34435667 34435713 -471857 + L1MD3 LINE L1 7934 7979 -16 183 104 62 0 chr21 34436304 34436352 -471218 + (CCCCG)n Simple_repeat Simple_repeat 3 53 0 283 116 0 83 chr21 34436580 34436701 -470869 + (TGGGGG)n Simple_repeat Simple_repeat 3 113 0 807 278 116 24 chr21 34438342 34438412 -469158 - L2 LINE L2 -852 2462 2400 1843 154 3 13 chr21 34438412 34438710 -468860 - AluJo SINE Alu -17 295 1 807 278 116 24 chr21 34438710 34439177 -468393 - L2 LINE L2 -914 2400 1827 546 222 85 20 chr21 34439816 34439969 -467601 + MLT1F LTR MaLR 285 447 -95 325 233 0 0 chr21 34440178 34440238 -467332 + HAL1 LINE L1 1568 1627 -880 3312 191 76 60 chr21 34440276 34441074 -466496 - MER21B LTR ERV1 -52 811 1 361 175 50 62 chr21 34441104 34441184 -466386 + HAL1 LINE L1 1685 1763 -744 902 237 80 67 chr21 34441185 34441636 -465934 + HAL1 LINE L1 1864 2320 -187 299 244 237 0 chr21 34441682 34441838 -465732 - L2 LINE L2 -1826 1488 1296 1666 167 19 0 chr21 34443172 34443430 -464140 - AluJo SINE Alu -49 263 1 273 269 77 15 chr21 34443533 34443663 -463907 - L1ME LINE L1 -393 5728 5591 224 363 18 18 chr21 34443834 34443947 -463623 + MIR SINE MIR 20 132 -130 2312 113 0 3 chr21 34444598 34444900 -462670 - AluSx SINE Alu -11 301 1 1647 178 38 3 chr21 34444902 34445194 -462376 - AluJb SINE Alu -10 302 1 2485 80 3 0 chr21 34445315 34445616 -461954 + AluSq SINE Alu 1 302 -11 2309 120 0 0 chr21 34445923 34446223 -461347 + AluSx SINE Alu 1 300 -12 1396 268 118 31 chr21 34446274 34447347 -460223 - L2 LINE L2 0 3313 2067 606 308 128 35 chr21 34447444 34447905 -459665 - L2 LINE L2 -1488 1826 1323 219 214 18 18 chr21 34451466 34451522 -456048 + MER5A DNA MER1_type 115 170 -19 754 129 15 23 chr21 34453165 34453297 -454273 - FLAM_A SINE Alu -2 131 1 637 257 57 0 chr21 34453538 34453713 -453857 + AluJo SINE Alu 113 297 -15 668 182 8 23 chr21 34454621 34454753 -452817 - FLAM_A SINE Alu -3 130 1 2017 100 104 0 chr21 34454871 34455150 -452420 - AluSx SINE Alu 0 312 5 849 127 0 56 chr21 34455315 34455457 -452113 + AluJo SINE Alu 1 134 -178 534 281 88 28 chr21 34455985 34456234 -451336 + HAL1 LINE L1 775 1038 -1469 845 249 102 12 chr21 34456239 34456484 -451086 + HAL1 LINE L1 1051 1317 -1190 1916 164 10 3 chr21 34456693 34456986 -450584 - AluJb SINE Alu -17 295 1 236 299 46 0 chr21 34457208 34457295 -450275 - MIR SINE MIR -9 253 163 251 193 0 0 chr21 34457393 34457450 -450120 - MIR SINE MIR -147 115 59 1387 250 93 21 chr21 34457840 34458363 -449207 + MLT1F1 LTR MaLR 1 567 0 1596 132 101 35 chr21 34459376 34459664 -447906 - AluJo SINE Alu -5 307 1 1875 137 31 10 chr21 34459905 34460197 -447373 + AluSx SINE Alu 1 298 -14 696 102 29 22 chr21 34460212 34460349 -447221 + L1MB7 LINE L1 6047 6184 0 1874 160 14 10 chr21 34460358 34460646 -446924 + AluJb SINE Alu 1 289 -23 1042 141 153 51 chr21 34460898 34461153 -446417 + MSTA LTR MaLR 1 281 -147 297 202 108 75 chr21 34461138 34461341 -446229 + MSTA LTR MaLR 92 292 -136 282 190 83 4 chr21 34461353 34461437 -446133 + MSTB LTR MaLR 122 212 -214 1387 113 181 8 chr21 34461415 34461680 -445890 + MSTA LTR MaLR 118 428 0 237 293 155 17 chr21 34462466 34462582 -444988 - L2 LINE L2 0 3272 3141 181 310 103 9 chr21 34462881 34462997 -444573 - L2 LINE L2 -581 2733 2607 240 292 45 22 chr21 34463124 34463213 -444357 - L2 LINE L2 -1000 2314 2224 2153 111 7 7 chr21 34464690 34464997 -442573 + AluSx SINE Alu 1 307 -5 258 258 41 98 chr21 34464998 34465138 -442432 + L1MC/D LINE L1 5602 5730 -2078 2461 66 0 20 chr21 34465138 34465439 -442131 + AluSg SINE Alu 3 297 -13 258 258 41 98 chr21 34465439 34465492 -442078 + L1MC/D LINE L1 5730 5784 -2024 204 40 0 0 chr21 34466231 34466256 -441314 + (TG)n Simple_repeat Simple_repeat 2 26 0 2553 63 0 3 chr21 34466671 34466974 -440596 + AluY SINE Alu 1 302 -9 2074 131 0 36 chr21 34466985 34467128 -440442 + AluSx SINE Alu 1 129 -183 2379 88 24 0 chr21 34467128 34467424 -440146 + AluY SINE Alu 1 303 -8 2074 131 0 36 chr21 34467424 34467585 -439985 + AluSx SINE Alu 129 294 -18 871 185 26 0 chr21 34467779 34467930 -439640 - FAM SINE Alu -13 172 18 2292 117 0 3 chr21 34468950 34469257 -438313 + AluSc SINE Alu 1 306 -3 1254 149 4 52 chr21 34469300 34469548 -438022 + MER46A DNA MER2_type 1 236 0 1083 197 59 82 chr21 34469592 34469866 -437704 + L1M4 LINE L1 3412 3691 -2455 1951 185 0 0 chr21 34469866 34470174 -437396 + AluJo SINE Alu 4 311 -1 2628 42 7 3 chr21 34470183 34470490 -437080 + AluY SINE Alu 1 308 -3 1083 197 59 82 chr21 34470490 34470545 -437025 + L1M4 LINE L1 3699 3743 -2403 2418 96 0 3 chr21 34470545 34470857 -436713 + AluY SINE Alu 1 311 0 1171 211 3 48 chr21 34470859 34470999 -436571 + L1M4 LINE L1 4423 4545 -1601 2092 123 16 7 chr21 34470999 34471308 -436262 + AluSx SINE Alu 1 312 0 1171 211 3 48 chr21 34471308 34471461 -436109 + L1M4 LINE L1 4545 4703 -1443 280 250 42 21 chr21 34471438 34471534 -436036 + L1M4 LINE L1 5023 5120 -1026 1781 162 10 36 chr21 34475106 34475409 -432161 + AluJb SINE Alu 1 295 -17 2438 101 0 0 chr21 34475412 34475720 -431850 + AluSx SINE Alu 1 308 -4 511 299 18 24 chr21 34475815 34475982 -431588 - L2 LINE L2 -1 3312 3147 1938 112 36 14 chr21 34476259 34476555 -431015 + AluSx SINE Alu 1 302 0 1630 147 47 30 chr21 34476617 34476917 -430653 - AluJo SINE Alu -7 305 1 877 162 7 7 chr21 34478155 34478303 -429267 + FRAM SINE Alu 1 148 -18 807 211 0 12 chr21 34478662 34478823 -428747 - AluJo/FRAM SINE Alu -6 296 138 1340 145 14 36 chr21 34478824 34479045 -428525 - AluJb SINE Alu -10 302 87 2153 129 3 6 chr21 34479075 34479386 -428184 + AluSx SINE Alu 1 310 -2 2054 110 57 0 chr21 34480491 34480772 -426798 - AluSx SINE Alu -15 297 1 365 194 0 0 chr21 34482135 34482151 -425419 + AluSg/x SINE Alu 120 135 -167 1853 155 3 13 chr21 34482151 34482460 -425110 + AluJb SINE Alu 1 306 -6 2040 112 3 29 chr21 34483467 34483781 -423789 + AluSp SINE Alu 1 306 -7 2344 74 3 0 chr21 34483940 34484237 -423333 - AluSp SINE Alu -14 299 2 1801 142 0 42 chr21 34484238 34484548 -423022 - AluSx SINE Alu -15 297 1 1176 160 0 58 chr21 34485452 34485677 -421893 + AluJo SINE Alu 87 298 -14 2306 69 3 0 chr21 34486178 34486469 -421101 - AluY SINE Alu -19 292 1 1614 92 9 9 chr21 34486570 34486797 -420773 + AluSg/x SINE Alu 68 294 -16 293 182 0 0 chr21 34487900 34487955 -419615 + AluJo SINE Alu 80 134 -168 2237 72 3 7 chr21 34488310 34488603 -418967 - AluY SINE Alu -19 292 1 808 206 0 0 chr21 34489038 34489179 -418391 + FLAM_C SINE Alu 2 142 -1 1843 144 10 0 chr21 34489216 34489515 -418055 + AluSx SINE Alu 1 302 -10 705 183 0 38 chr21 34489523 34489654 -417916 + FLAM_C SINE Alu 6 131 -12 24 0 0 0 chr21 34489655 34489679 -417891 + AT_rich Low_complexity Low_complexity 1 24 0 771 182 84 15 chr21 34489683 34489886 -417684 + L1M3 LINE L1 5601 5817 -363 2332 84 0 3 chr21 34490020 34490331 -417239 + AluY SINE Alu 1 310 -1 2216 99 0 0 chr21 34490419 34490722 -416848 - AluY SINE Alu -8 303 1 224 308 51 0 chr21 34494016 34494133 -413437 + C-rich Low_complexity Low_complexity 2 124 0 225 0 0 0 chr21 34494680 34494705 -412865 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1793 104 17 35 chr21 34494709 34494998 -412572 - AluSx SINE Alu -28 284 1 368 211 8 68 chr21 34495040 34495173 -412397 - L1MC5 LINE L1 -1 7960 7836 2041 107 0 64 chr21 34495206 34495534 -412036 + AluSq SINE Alu 1 307 -6 2318 90 0 10 chr21 34495893 34496205 -411365 + AluSc SINE Alu 1 309 0 1642 159 0 22 chr21 34496253 34496530 -411040 + AluJb SINE Alu 21 291 -21 1456 114 63 82 chr21 34496806 34496939 -410631 - MER65A LTR ERV1 -3 442 308 2217 93 0 26 chr21 34496939 34497251 -410319 - AluSx SINE Alu -8 304 1 1456 114 63 82 chr21 34497251 34497434 -410136 - MER65A LTR ERV1 -137 308 132 270 119 0 0 chr21 34497437 34497479 -410091 - MER65B LTR ERV1 -357 174 133 275 116 0 0 chr21 34497485 34497528 -410042 - MER65B LTR ERV1 -357 174 132 738 163 41 76 chr21 34497531 34497703 -409867 - MER65B LTR ERV1 -357 174 9 2176 98 0 7 chr21 34497704 34498001 -409569 - AluSg SINE Alu -15 295 1 2217 82 0 20 chr21 34498129 34498261 -409309 + AluSq SINE Alu 6 139 -174 2006 74 106 0 chr21 34498261 34498544 -409026 + AluSp SINE Alu 1 313 0 2217 82 0 20 chr21 34498544 34498714 -408856 + AluSq SINE Alu 139 302 -11 1350 195 87 76 chr21 34499329 34499765 -407805 - LTR8A LTR ERV1 0 727 287 453 209 0 11 chr21 34499847 34499938 -407632 - LTR8A LTR ERV1 -466 261 172 442 250 0 42 chr21 34499939 34500071 -407499 - MER87 LTR ERV1 -356 185 75 263 288 0 0 chr21 34500055 34500114 -407456 - MER87 LTR ERV1 -396 145 87 263 288 0 0 chr21 34500129 34500188 -407382 - MER87 LTR ERV1 -396 145 87 259 318 0 0 chr21 34500203 34500266 -407304 - MER87 LTR ERV1 -396 145 83 274 302 0 0 chr21 34500277 34500340 -407230 - MER87 LTR ERV1 -396 145 83 263 288 0 0 chr21 34500351 34500410 -407160 - MER87 LTR ERV1 -396 145 87 248 305 0 0 chr21 34500425 34500484 -407086 - MER87 LTR ERV1 -396 145 87 279 271 0 0 chr21 34500499 34500558 -407012 - MER87 LTR ERV1 -396 145 87 274 302 0 0 chr21 34500573 34500636 -406934 - MER87 LTR ERV1 -396 145 83 263 288 0 0 chr21 34500647 34500706 -406864 - MER87 LTR ERV1 -396 145 87 263 288 0 0 chr21 34500721 34500780 -406790 - MER87 LTR ERV1 -396 145 87 274 302 0 0 chr21 34500795 34500858 -406712 - MER87 LTR ERV1 -396 145 83 259 318 0 0 chr21 34500869 34500932 -406638 - MER87 LTR ERV1 -396 145 83 248 305 0 0 chr21 34500943 34501002 -406568 - MER87 LTR ERV1 -396 145 87 259 318 0 0 chr21 34501017 34501080 -406490 - MER87 LTR ERV1 -396 145 83 248 305 0 0 chr21 34501091 34501150 -406420 - MER87 LTR ERV1 -396 145 87 259 318 0 0 chr21 34501165 34501228 -406342 - MER87 LTR ERV1 -396 145 83 263 288 0 0 chr21 34501239 34501298 -406272 - MER87 LTR ERV1 -396 145 87 248 305 0 0 chr21 34501313 34501372 -406198 - MER87 LTR ERV1 -396 145 87 259 318 0 0 chr21 34501387 34501450 -406120 - MER87 LTR ERV1 -396 145 83 259 318 0 0 chr21 34501461 34501524 -406046 - MER87 LTR ERV1 -396 145 83 259 318 0 0 chr21 34501535 34501598 -405972 - MER87 LTR ERV1 -396 145 83 290 286 0 0 chr21 34501609 34501672 -405898 - MER87 LTR ERV1 -396 145 83 274 302 0 0 chr21 34501683 34501746 -405824 - MER87 LTR ERV1 -396 145 83 259 318 0 0 chr21 34501757 34501820 -405750 - MER87 LTR ERV1 -396 145 83 263 288 0 0 chr21 34501831 34501890 -405680 - MER87 LTR ERV1 -396 145 87 263 288 0 0 chr21 34501905 34501964 -405606 - MER87 LTR ERV1 -396 145 87 259 318 0 0 chr21 34501979 34502042 -405528 - MER87 LTR ERV1 -396 145 83 263 288 0 0 chr21 34502053 34502112 -405458 - MER87 LTR ERV1 -396 145 87 259 318 0 0 chr21 34502127 34502190 -405380 - MER87 LTR ERV1 -396 145 83 225 94 0 0 chr21 34502977 34503009 -404561 + (TCC)n Simple_repeat Simple_repeat 1 32 0 2317 70 3 7 chr21 34504210 34504511 -403059 + AluSp SINE Alu 1 300 -13 1826 65 0 0 chr21 34504514 34504745 -402825 + AluSq SINE Alu 1 231 -82 180 154 0 62 chr21 34504747 34504812 -402758 + C-rich Low_complexity Low_complexity 2 62 0 2407 41 0 3 chr21 34505932 34506226 -401344 - AluY SINE Alu -18 293 1 1880 136 10 14 chr21 34506228 34506523 -401047 - AluSx SINE Alu -18 294 1 198 103 0 0 chr21 34506533 34506562 -401008 + (T)n Simple_repeat Simple_repeat 1 29 0 1241 159 0 5 chr21 34506564 34506765 -400805 - AluSx SINE Alu -112 200 1 2323 70 0 22 chr21 34507646 34507961 -399609 + AluY SINE Alu 1 308 -3 1778 159 0 17 chr21 34508631 34508932 -398638 - AluJo SINE Alu -4 308 13 207 0 0 0 chr21 34509569 34509592 -397978 + (TGG)n Simple_repeat Simple_repeat 1 23 0 734 280 58 14 chr21 34510500 34510515 -397055 + L1MB2 LINE L1 5152 5165 -999 1537 137 6 132 chr21 34510515 34510857 -396713 + AluJo SINE Alu 2 300 -2 734 280 58 14 chr21 34510857 34511067 -396503 + L1MB2 LINE L1 5165 5364 -800 1385 157 66 46 chr21 34511067 34511175 -396395 + AluJo SINE Alu 1 105 -207 261 0 0 0 chr21 34511175 34511204 -396366 + (CA)n Simple_repeat Simple_repeat 2 30 0 342 0 0 0 chr21 34511206 34511244 -396326 + (TA)n Simple_repeat Simple_repeat 2 39 0 2190 66 0 0 chr21 34511244 34511518 -396052 - AluY SINE Alu -7 304 31 2331 81 0 13 chr21 34511518 34511827 -395743 - AluY SINE Alu -6 305 1 1385 157 66 46 chr21 34511827 34512018 -395552 + AluJo SINE Alu 104 311 -1 734 280 58 14 chr21 34512018 34512214 -395356 + L1MB2 LINE L1 5364 5591 -573 1050 219 86 19 chr21 34512304 34512560 -395010 + L1MB2 LINE L1 5732 6004 -167 849 233 84 19 chr21 34512561 34512823 -394747 + L1MB2 LINE L1 5888 6166 -5 1868 171 0 0 chr21 34512823 34513122 -394448 - AluJb SINE Alu -8 304 6 2276 66 7 10 chr21 34513155 34513456 -394114 + AluY SINE Alu 1 300 -11 634 186 0 9 chr21 34513472 34513585 -393985 + FLAM_A SINE Alu 22 133 -9 373 175 15 2 chr21 34513586 34513661 -393909 + MLT1D LTR MaLR 115 187 -324 2054 88 28 3 chr21 34513724 34514007 -393563 + AluSc SINE Alu 1 290 -19 1845 159 3 13 chr21 34514070 34514385 -393185 - AluJb SINE Alu 0 312 1 2202 112 0 0 chr21 34514390 34514693 -392877 - AluSx SINE Alu -9 303 1 762 119 0 0 chr21 34514702 34514803 -392767 - FLAM_C SINE Alu -36 107 7 805 219 21 0 chr21 34515303 34515490 -392080 + L1ME2 LINE L1 5393 5583 -583 1121 141 6 0 chr21 34515490 34515660 -391910 - AluSg/x SINE Alu -11 299 129 2177 90 0 0 chr21 34515680 34515969 -391601 + AluSg SINE Alu 3 291 -19 575 244 0 0 chr21 34515980 34516103 -391467 + L1ME2 LINE L1 5617 5739 -425 370 86 0 23 chr21 34516103 34516170 -391400 + MSTC LTR MaLR 22 84 -315 2035 114 37 43 chr21 34516180 34516530 -391040 + MSTC LTR MaLR 38 385 -43 1123 86 0 0 chr21 34516534 34516674 -390896 + AluSq/x SINE Alu 1 140 -173 2221 90 3 3 chr21 34516676 34516976 -390594 + AluSq SINE Alu 1 300 -13 304 65 109 0 chr21 34516976 34517022 -390548 + MSTC LTR MaLR 378 428 0 1041 216 41 61 chr21 34517022 34517212 -390358 + L1ME2 LINE L1 5748 5930 -234 2005 92 3 11 chr21 34517212 34517521 -390049 + AluSg1 SINE Alu 1 307 0 1041 216 41 61 chr21 34517521 34517691 -389879 + L1ME2 LINE L1 5930 6102 -62 2169 102 6 6 chr21 34517692 34518005 -389565 + AluSq SINE Alu 1 313 0 1765 162 0 3 chr21 34518024 34518307 -389263 + AluSx SINE Alu 1 282 -30 189 0 0 0 chr21 34518317 34518338 -389232 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 1876 135 7 10 chr21 34518364 34518667 -388903 - AluSx SINE Alu -10 302 1 858 170 0 6 chr21 34519128 34519408 -388162 + (TCCA)n Simple_repeat Simple_repeat 1 456 -43 990 140 0 0 chr21 34519408 34519587 -387983 + (CCCA)n Simple_repeat Simple_repeat 2 180 0 858 170 0 6 chr21 34519587 34519631 -387939 + (TCCA)n Simple_repeat Simple_repeat 456 499 0 1860 90 0 0 chr21 34519818 34520063 -387507 - AluSq SINE Alu -15 298 54 418 93 0 0 chr21 34520112 34520166 -387404 - AluSq SINE Alu -263 55 2 604 152 0 0 chr21 34520169 34520268 -387302 - L1ME LINE L1 -682 5484 5386 1287 239 85 13 chr21 34520562 34520880 -386690 - MER58B DNA MER1_type 0 341 1 1669 103 0 0 chr21 34521651 34521875 -385695 - AluSx SINE Alu -88 224 1 808 176 12 24 chr21 34523503 34523668 -383902 + AluJb SINE Alu 138 300 -12 1959 152 0 0 chr21 34523671 34523967 -383603 + AluSx SINE Alu 1 296 -16 312 299 65 0 chr21 34524417 34524524 -383046 + MIR SINE MIR 83 196 -66 804 159 0 8 chr21 34526986 34527112 -380458 + AluJo/FLAM SINE Alu 9 133 -179 2141 93 10 6 chr21 34527114 34527426 -380144 + AluSq SINE Alu 1 313 0 392 109 0 0 chr21 34527548 34527603 -379967 + LTR62 LTR ERVK 1 55 -664 2101 89 10 10 chr21 34527607 34527899 -379671 - AluSq SINE Alu -21 292 1 635 112 0 28 chr21 34527928 34528035 -379535 + AluSp/q SINE Alu 205 308 -5 1400 144 95 1 chr21 34528036 34528490 -379080 + LTR62 LTR ERVK 66 612 -107 560 207 44 0 chr21 34528531 34528666 -378904 - L1MC3 LINE L1 0 7785 7645 1140 135 0 0 chr21 34528676 34528770 -378800 - AluSg/x SINE Alu -22 288 126 533 116 0 0 chr21 34528770 34528839 -378731 - AluSc SINE Alu -115 194 126 2303 209 78 0 chr21 34528857 34529394 -378176 - L1MC3 LINE L1 -125 7660 7082 372 97 0 0 chr21 34529399 34529461 -378109 - Alu SINE Alu 0 302 241 1789 152 13 7 chr21 34529504 34529806 -377764 + AluJb SINE Alu 1 304 -8 540 110 24 0 chr21 34530206 34530288 -377282 + AluSg/x SINE Alu 212 295 -14 225 306 54 27 chr21 34530903 34531050 -376520 - MER4E LTR ERV1 -153 613 463 388 169 49 49 chr21 34532030 34532172 -375398 + (CGGGG)n Simple_repeat Simple_repeat 2 143 0 23 33 0 0 chr21 34532282 34532312 -375258 + GC_rich Low_complexity Low_complexity 1 30 0 2116 99 3 0 chr21 34534229 34534523 -373047 + AluSx SINE Alu 1 295 -17 2437 62 3 0 chr21 34534548 34534856 -372714 - AluY SINE Alu -2 309 1 943 205 0 0 chr21 34534896 34535062 -372508 - FRAM SINE Alu 0 166 1 812 184 13 0 chr21 34535752 34535904 -371666 - AluSg/x SINE Alu -2 308 155 2135 114 3 0 chr21 34535960 34536258 -371312 - AluSq SINE Alu -14 299 1 1989 125 0 7 chr21 34536274 34536571 -370999 - AluSg SINE Alu -15 295 1 1659 189 0 3 chr21 34537615 34537916 -369654 - AluJb SINE Alu -12 300 1 285 89 0 0 chr21 34538515 34538560 -369010 + (TG)n Simple_repeat Simple_repeat 1 45 0 827 205 12 0 chr21 34538656 34538822 -368748 - AluJb SINE Alu -12 300 133 1303 173 197 8 chr21 34539031 34539285 -368285 + AluJo SINE Alu 1 302 0 2167 104 0 0 chr21 34539375 34539672 -367898 + AluSq SINE Alu 1 297 -16 624 187 7 0 chr21 34539806 34539945 -367625 - Looper DNA T2_type -8 1550 1411 664 222 161 6 chr21 34539958 34540325 -367245 - Looper DNA T2_type -598 960 520 1690 148 7 21 chr21 34540326 34540616 -366954 + AluJo SINE Alu 3 288 -24 2286 98 3 0 chr21 34540649 34540955 -366615 + AluY SINE Alu 1 307 -4 1128 83 51 0 chr21 34540955 34541111 -366459 + AluSg/x SINE Alu 132 295 -15 861 81 0 0 chr21 34541116 34541227 -366343 + AluSq/x SINE Alu 1 111 -202 877 106 0 0 chr21 34541227 34541350 -366220 + AluSc SINE Alu 173 295 -14 2361 71 3 0 chr21 34541422 34541719 -365851 + AluY SINE Alu 1 298 -13 1092 64 14 0 chr21 34542911 34543051 -364519 + AluSg SINE Alu 1 142 -168 1809 125 49 30 chr21 34543170 34543475 -364095 - AluSx SINE Alu -1 311 1 2152 82 11 0 chr21 34543481 34543763 -363807 - AluSq SINE Alu -17 296 12 3237 250 47 62 chr21 34543960 34544480 -363090 - L1MC3 LINE L1 -833 6952 6426 258 56 0 0 chr21 34544480 34544516 -363054 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 1670 110 83 0 chr21 34544520 34544774 -362796 - AluSx SINE Alu -37 275 1 3237 250 47 62 chr21 34544774 34545081 -362489 - L1MC3 LINE L1 -1362 6423 6113 2232 75 3 7 chr21 34545081 34545375 -362195 - AluSp SINE Alu -14 299 7 1777 148 3 17 chr21 34545381 34545671 -361899 - AluJo SINE Alu -22 290 5 3237 250 47 62 chr21 34545671 34546092 -361478 - L1MC3 LINE L1 -1677 6108 5710 1902 108 30 43 chr21 34546100 34546270 -361300 - AluSx SINE Alu -11 301 135 1991 100 7 10 chr21 34546270 34546579 -360991 - AluSx SINE Alu 0 312 1 1902 108 30 43 chr21 34546579 34546713 -360857 - AluSx SINE Alu -177 135 1 3053 100 14 11 chr21 34546877 34547316 -360254 - MLT2A2 LTR ERVL -13 440 1 555 296 108 45 chr21 34547344 34547484 -360086 - L1MEd LINE L1 -4863 1256 1126 2559 90 16 27 chr21 34547484 34547851 -359719 - THE1B LTR MaLR -1 363 1 555 296 108 45 chr21 34547851 34548109 -359461 - L1MEd LINE L1 -4993 1126 833 1552 108 0 18 chr21 34548172 34548395 -359175 - AluSg/x SINE Alu -17 293 75 2015 119 3 0 chr21 34548395 34548680 -358890 - AluSx SINE Alu -26 286 1 35 0 0 0 chr21 34548970 34549005 -358565 + AT_rich Low_complexity Low_complexity 1 35 0 809 172 0 8 chr21 34549029 34549163 -358407 - AluJo SINE Alu -178 134 2 1229 210 12 0 chr21 34549175 34549427 -358143 - AluJo SINE Alu -8 304 50 1040 174 0 21 chr21 34549434 34549606 -357964 - AluSg/x SINE Alu -7 303 134 1965 144 0 0 chr21 34549606 34549904 -357666 - AluSx SINE Alu -14 298 1 1040 174 0 21 chr21 34549904 34549921 -357649 - AluSg/x SINE Alu -176 134 118 466 163 0 12 chr21 34549921 34550007 -357563 - L1P5 LINE L1 -583 5568 5484 5344 209 40 7 chr21 34549980 34550025 -357545 - L1 LINE L1 -1617 4529 4487 2104 100 33 7 chr21 34550025 34550326 -357244 - AluSc SINE Alu 0 309 1 5344 209 40 7 chr21 34550326 34551550 -356020 - L1 LINE L1 -1659 4487 3218 2257 84 0 31 chr21 34551550 34551871 -355699 - AluY SINE Alu 0 311 1 2244 98 3 0 chr21 34552709 34553014 -354556 - AluSx SINE Alu -6 306 1 1275 286 56 7 chr21 34553075 34553561 -354009 - L1MB5 LINE L1 0 6174 5655 1905 127 0 36 chr21 34556115 34556423 -351147 - AluJo SINE Alu -15 297 1 501 188 0 0 chr21 34557440 34557520 -350050 + AluSg1 SINE Alu 2 81 -228 1153 105 17 12 chr21 34557520 34557714 -349856 + AluSq SINE Alu 127 313 0 597 282 95 0 chr21 34560102 34560345 -347225 - MLT1E2 LTR MaLR -1 625 351 333 0 0 0 chr21 34561213 34561250 -346320 + (TG)n Simple_repeat Simple_repeat 1 37 0 258 283 40 0 chr21 34561991 34562090 -345480 + MER3 DNA MER1_type 6 108 -101 180 0 0 0 chr21 34564941 34564961 -342609 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1576 145 57 8 chr21 34564965 34565227 -342343 - AluSx SINE Alu -37 275 1 199 347 61 0 chr21 34565887 34565985 -341585 - L3 LINE CR1 -865 712 609 2129 94 0 42 chr21 34566099 34566290 -341280 - AluSx SINE Alu 0 324 151 2325 82 0 25 chr21 34566290 34566606 -340964 - AluY SINE Alu -3 308 1 2129 94 0 42 chr21 34566606 34566751 -340819 - AluSx SINE Alu -173 151 1 788 279 91 71 chr21 34566939 34566979 -340591 - L1MEc LINE L1 -3893 2503 2465 2145 111 3 0 chr21 34566979 34567285 -340285 - AluSg SINE Alu -3 307 1 788 279 91 71 chr21 34567285 34567353 -340217 - L1MEc LINE L1 -3931 2465 2400 1979 139 26 0 chr21 34567353 34567655 -339915 - AluJb SINE Alu -2 310 1 788 279 91 71 chr21 34567655 34567712 -339858 - L1MEc LINE L1 -3996 2400 2346 2237 66 13 16 chr21 34567712 34568016 -339554 - AluY SINE Alu -3 308 6 2374 71 0 0 chr21 34568019 34568316 -339254 - AluY SINE Alu -14 297 1 788 279 91 71 chr21 34568316 34568607 -338963 - L1MEc LINE L1 -4051 2345 2061 1943 122 20 20 chr21 34568607 34568911 -338659 + AluSx SINE Alu 1 304 -8 788 279 91 71 chr21 34568911 34569239 -338331 - L1MEc LINE L1 -4335 2061 1696 846 274 42 42 chr21 34569353 34569783 -337787 - L1MEc LINE L1 -5323 882 453 796 109 31 16 chr21 34570157 34570381 -337189 + AluJo SINE Alu 1 298 -14 2246 81 7 0 chr21 34574809 34575105 -332465 - AluSx SINE Alu -14 298 1 1568 140 67 21 chr21 34575389 34575674 -331896 + AluJb SINE Alu 1 298 -14 2203 67 0 11 chr21 34575674 34575958 -331612 + AluY SINE Alu 13 293 -18 829 174 0 0 chr21 34576739 34576871 -330699 - FLAM_C SINE Alu 0 133 2 1120 185 27 14 chr21 34578123 34578252 -329318 + AluJo SINE Alu 1 136 -176 2256 88 0 31 chr21 34578252 34578572 -328998 + AluY SINE Alu 1 310 -1 1120 185 27 14 chr21 34578572 34578664 -328906 + AluJo SINE Alu 136 225 -87 1442 158 102 3 chr21 34578703 34578987 -328583 - AluJb SINE Alu 0 312 1 332 183 0 57 chr21 34579275 34579530 -328040 + (CA)n Simple_repeat Simple_repeat 1 240 0 316 206 5 53 chr21 34579657 34579846 -327724 + (CA)n Simple_repeat Simple_repeat 1 180 0 263 143 48 32 chr21 34579882 34579945 -327625 - MER4-int LTR ERV1 -5439 1159 1096 1687 172 28 0 chr21 34580521 34580812 -326758 - AluJo SINE Alu -13 299 1 2202 78 17 0 chr21 34580928 34581223 -326347 - AluSc SINE Alu -9 300 1 2309 77 7 0 chr21 34581228 34581526 -326044 - AluSg SINE Alu -10 300 1 2314 92 3 0 chr21 34582066 34582370 -325200 + AluSp SINE Alu 1 305 -8 23 33 0 0 chr21 34582791 34582821 -324749 + AT_rich Low_complexity Low_complexity 1 30 0 1175 211 70 7 chr21 34585090 34585375 -322195 + AluJo SINE Alu 10 312 0 238 256 65 0 chr21 34585440 34585543 -322027 - L1M4 LINE L1 -248 5936 5825 1387 213 65 104 chr21 34585644 34586184 -321386 - MER44D DNA MER2_type 0 605 32 766 270 53 41 chr21 34586454 34586982 -320588 - L1MDb LINE L1 -4574 2251 1608 189 74 0 0 chr21 34586982 34587009 -320561 + (TTA)n Simple_repeat Simple_repeat 2 28 0 766 270 53 41 chr21 34587009 34587309 -320261 - L1MDb LINE L1 -5217 1608 1313 1040 304 79 26 chr21 34587314 34587652 -319918 - L1MDb LINE L1 -5754 788 415 2415 65 16 0 chr21 34587652 34587958 -319612 - AluY SINE Alu 0 311 1 1040 304 79 26 chr21 34587958 34588110 -319460 - L1MDb LINE L1 -6127 415 272 1863 126 7 39 chr21 34588381 34588691 -318879 + AluSx SINE Alu 1 300 -12 441 0 0 0 chr21 34588695 34588744 -318826 + (TG)n Simple_repeat Simple_repeat 2 50 0 359 236 45 0 chr21 34589361 34589450 -318120 - L1MB3 LINE L1 -9 6174 6082 602 170 34 20 chr21 34592446 34592573 -314997 - L1MB3 LINE L1 -60 6123 5992 1885 147 0 3 chr21 34592573 34592865 -314705 + AluJo SINE Alu 3 293 -19 602 170 34 20 chr21 34592865 34592884 -314686 - L1MB3 LINE L1 -191 5992 5975 2464 60 0 0 chr21 34595427 34595728 -311842 + AluY SINE Alu 1 301 -10 437 192 0 0 chr21 34597299 34597372 -310198 + AluJ/FLAM SINE Alu 1 73 -239 1153 160 75 0 chr21 34597627 34597827 -309743 + AluJo SINE Alu 85 299 -13 192 331 89 0 chr21 34597840 34597964 -309606 - L2 LINE L2 -1054 2260 2126 25 0 0 0 chr21 34599576 34599601 -307969 + AT_rich Low_complexity Low_complexity 1 25 0 2194 101 3 3 chr21 34599712 34600019 -307551 - AluSx SINE Alu -5 307 1 657 260 157 59 chr21 34603699 34604088 -303482 - MSTC LTR MaLR -1 427 1 207 0 0 0 chr21 34604098 34604121 -303449 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2015 115 4 0 chr21 34604121 34604400 -303170 - AluSx SINE Alu -32 280 1 779 281 125 15 chr21 34605908 34606300 -301270 - L1MD1 LINE L1 -14 6228 5794 2424 69 0 0 chr21 34606305 34606611 -300959 - AluY SINE Alu 0 311 6 2388 81 0 3 chr21 34608007 34608317 -299253 - AluSx SINE Alu -3 309 1 184 225 50 0 chr21 34608514 34608554 -299016 - L2 LINE L2 -5 3267 3226 2170 102 6 10 chr21 34609335 34609649 -297921 - AluSq SINE Alu 0 313 1 21 71 0 0 chr21 34609746 34609788 -297782 + AT_rich Low_complexity Low_complexity 1 42 0 24 53 0 0 chr21 34610432 34610470 -297100 + AT_rich Low_complexity Low_complexity 1 38 0 1684 142 55 7 chr21 34612167 34612442 -295128 + AluJb SINE Alu 5 292 -20 1344 204 31 17 chr21 34612452 34612741 -294829 + AluJb SINE Alu 1 293 -19 2087 89 14 3 chr21 34612913 34613205 -294365 + AluSx SINE Alu 1 295 -17 21 36 0 0 chr21 34613290 34613318 -294252 + AT_rich Low_complexity Low_complexity 1 28 0 403 338 83 0 chr21 34613789 34613946 -293624 - L1M4 LINE L1 -1643 4503 4334 2448 258 97 41 chr21 34613952 34614832 -292738 - L1M4 LINE L1 -1827 4319 3349 2381 62 0 7 chr21 34614832 34615140 -292430 - AluY SINE Alu -5 306 1 2448 258 97 41 chr21 34615140 34615497 -292073 - L1M4 LINE L1 -2797 3349 3013 1884 231 59 49 chr21 34615697 34616217 -291353 - L1ME1 LINE L1 -300 5866 5353 2097 93 13 17 chr21 34616217 34616517 -291053 - AluSx SINE Alu -9 303 5 1884 231 59 49 chr21 34616517 34616681 -290889 - L1ME1 LINE L1 -813 5353 5163 2013 128 10 0 chr21 34616681 34616985 -290585 - AluSx SINE Alu -5 307 1 1884 231 59 49 chr21 34616985 34617000 -290570 - L1ME1 LINE L1 -1003 5163 5150 1832 144 27 0 chr21 34617092 34617391 -290179 - AluSx SINE Alu -5 307 1 292 309 103 26 chr21 34617983 34618177 -289393 + MIR SINE MIR 18 226 -36 2389 90 0 0 chr21 34621479 34621789 -285781 - AluSx SINE Alu -2 310 1 189 0 0 0 chr21 34621916 34621937 -285633 + (TCC)n Simple_repeat Simple_repeat 3 23 0 183 42 0 0 chr21 34622022 34622046 -285524 + (TCC)n Simple_repeat Simple_repeat 3 26 0 2384 73 0 25 chr21 34622863 34623180 -284390 - AluSg1 SINE Alu 0 309 1 2257 94 3 3 chr21 34624682 34624989 -282581 - AluSg SINE Alu -3 307 1 1732 148 3 11 chr21 34625129 34625412 -282158 + AluJb SINE Alu 14 294 -18 305 179 18 0 chr21 34626071 34626127 -281443 - L1MC4 LINE L1 -302 7740 7684 864 217 0 0 chr21 34627243 34627404 -280166 - AluJb SINE Alu -17 295 135 308 324 76 38 chr21 34627749 34627987 -279583 - L1M4b LINE L1 -5188 1671 1425 408 216 199 39 chr21 34630251 34630432 -277138 + MER6B DNA MER2_type 1 210 0 836 121 9 0 chr21 34630463 34630579 -276991 + FLAM_C SINE Alu 1 117 -16 1748 152 45 0 chr21 34630697 34630987 -276583 - AluJb SINE Alu -9 303 1 743 134 35 6 chr21 34631192 34631363 -276207 + GA-rich Low_complexity Low_complexity 2 177 0 286 302 16 16 chr21 34632179 34632308 -275262 + (CTCCG)n Simple_repeat Simple_repeat 5 133 0 273 57 0 0 chr21 34633559 34633594 -273976 + (T)n Simple_repeat Simple_repeat 1 35 0 1715 100 0 0 chr21 34633598 34633829 -273741 - AluSg1 SINE Alu -78 231 1 410 273 16 2 chr21 34634785 34634981 -272589 - MLT1A2 LTR MaLR -2 388 157 379 268 95 45 chr21 34637034 34637213 -270357 - L1M4 LINE L1 -2457 3689 3502 991 285 27 15 chr21 34639794 34640131 -267439 - L1M4 LINE L1 -1312 4834 4494 1917 126 14 0 chr21 34640132 34640417 -267153 - AluSx SINE Alu -23 289 1 418 186 0 35 chr21 34640484 34640570 -267000 - AluS SINE Alu -1 310 228 2121 111 0 3 chr21 34640596 34640893 -266677 + AluSq SINE Alu 1 296 -17 2110 100 3 29 chr21 34641264 34641574 -265996 - AluSg SINE Alu -8 302 1 2219 103 3 6 chr21 34642711 34643022 -264548 - AluSx SINE Alu -2 310 1 2256 71 0 0 chr21 34643032 34643338 -264232 - AluY SINE Alu 0 306 1 22 0 0 0 chr21 34643965 34643987 -263583 + GC_rich Low_complexity Low_complexity 1 22 0 2184 100 10 3 chr21 34646166 34646465 -261105 - AluSg SINE Alu -9 301 1 33 25 0 0 chr21 34646570 34646610 -260960 + AT_rich Low_complexity Low_complexity 1 40 0 788 148 7 22 chr21 34646824 34646959 -260611 - AluJb SINE Alu -6 306 174 1128 202 48 9 chr21 34646979 34647207 -260363 + MER2 DNA MER2_type 108 344 0 815 211 6 0 chr21 34650706 34650877 -256693 - AluJo SINE Alu -4 308 137 2132 99 3 3 chr21 34653487 34653780 -253790 - AluSx SINE Alu -19 293 1 1573 167 7 7 chr21 34653876 34654152 -253418 - AluJb SINE Alu -16 296 21 792 176 0 22 chr21 34654184 34654320 -253250 - AluJo SINE Alu -169 133 1 1719 103 0 0 chr21 34654470 34654703 -252867 + AluSg SINE Alu 1 233 -77 237 200 106 59 chr21 34655481 34655566 -252004 - MER21B LTR ERV1 -125 738 650 822 107 25 0 chr21 34655586 34655707 -251863 - AluJb SINE Alu -188 124 1 589 256 108 63 chr21 34655715 34655984 -251586 - MER21A LTR ERV1 -146 785 505 4245 72 47 22 chr21 34656029 34656813 -250757 - MER11A LTR ERVK 0 1266 225 1865 76 0 8 chr21 34656813 34657063 -250507 - AluY SINE Alu -1 310 63 4245 72 47 22 chr21 34657063 34657294 -250276 - MER11A LTR ERVK -1041 225 1 843 241 62 13 chr21 34657301 34657525 -250045 - MER21B LTR ERV1 -523 340 106 2407 127 68 22 chr21 34657572 34657943 -249627 + MSTA LTR MaLR 1 394 -34 2003 122 17 0 chr21 34657943 34658231 -249339 - AluSx SINE Alu -19 293 1 2407 127 68 22 chr21 34658231 34658268 -249302 + MSTA LTR MaLR 394 428 0 667 346 88 36 chr21 34658394 34658670 -248900 + ERVL LTR ERVL 3451 3754 -2010 2009 101 3 7 chr21 34658670 34658957 -248613 + AluSc SINE Alu 12 297 -12 667 346 88 36 chr21 34658957 34659064 -248506 + ERVL LTR ERVL 3754 3854 -1910 994 311 65 35 chr21 34659600 34660228 -247342 - HERV16 LTR ERVL -1245 4240 3594 2094 103 20 3 chr21 34661240 34661532 -246038 - AluSg SINE Alu -13 297 1 692 299 34 19 chr21 34662001 34662269 -245301 - HERV16 LTR ERVL -3021 1975 1704 806 228 11 5 chr21 34662272 34662456 -245114 - AluJo SINE Alu -8 304 120 1004 295 60 51 chr21 34663022 34663575 -243995 + MLT1F1 LTR MaLR 1 558 -9 271 197 136 15 chr21 34663583 34663649 -243921 - HERV16 LTR ERVL -3926 1070 997 2019 131 96 81 chr21 34663762 34664220 -243350 + MLT1C LTR MaLR 1 465 -2 1286 179 8 12 chr21 34664396 34664647 -242923 + AluJo SINE Alu 41 290 -22 1814 152 30 7 chr21 34664721 34665024 -242546 - AluJb SINE Alu -2 310 1 547 236 118 6 chr21 34665427 34665605 -241965 - LTR16A LTR ERVL 0 450 253 21 57 0 0 chr21 34666043 34666078 -241492 + GC_rich Low_complexity Low_complexity 1 35 0 358 276 19 0 chr21 34667550 34667655 -239915 + MIR SINE MIR 111 217 -45 243 269 39 13 chr21 34668054 34668132 -239438 - MIR SINE MIR -60 202 123 2251 92 0 0 chr21 34668196 34668490 -239080 - AluSx SINE Alu -18 294 1 1325 145 160 37 chr21 34668519 34668788 -238782 + AluJo SINE Alu 1 302 0 1448 168 52 8 chr21 34669284 34669552 -238018 + AluJb SINE Alu 11 290 -22 351 0 0 0 chr21 34671177 34671216 -236354 + (TG)n Simple_repeat Simple_repeat 2 40 0 2161 91 0 3 chr21 34671219 34671504 -236066 - AluSg SINE Alu -26 284 1 2294 81 3 0 chr21 34671608 34671903 -235667 + AluSq SINE Alu 1 296 -17 1136 223 27 37 chr21 34671956 34672290 -235280 - MSTD LTR MaLR 0 396 41 243 0 0 0 chr21 34672314 34672341 -235229 + (T)n Simple_repeat Simple_repeat 1 27 0 1463 120 0 27 chr21 34672782 34673007 -234563 + AluSp SINE Alu 1 219 -94 4834 190 54 35 chr21 34673008 34673839 -233731 + Charlie1a DNA MER1_type 73 886 -1875 2257 89 3 0 chr21 34673839 34674142 -233428 - AluSg SINE Alu -6 304 1 4834 190 54 35 chr21 34674142 34674511 -233059 + Charlie1a DNA MER1_type 886 1300 -1461 2567 57 0 0 chr21 34674511 34674811 -232759 + AluY SINE Alu 1 300 -11 4834 190 54 35 chr21 34674811 34674852 -232718 + Charlie1a DNA MER1_type 1300 1339 -116 244 0 0 0 chr21 34674852 34674879 -232691 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 702 211 0 0 chr21 34674879 34675002 -232568 - FRAM SINE Alu -27 149 27 1565 156 49 55 chr21 34675327 34675478 -232092 + AluJb SINE Alu 1 151 -161 2118 113 13 7 chr21 34675478 34675778 -231792 + AluSx SINE Alu 1 302 -10 1565 156 49 55 chr21 34675778 34675934 -231636 + AluJb SINE Alu 151 306 -6 2028 185 55 2 chr21 34675942 34676358 -231212 + L1MA10 LINE L1 5897 6334 0 454 258 33 0 chr21 34677156 34677276 -230294 + LTR16B LTR ERVL 188 311 -153 2223 95 6 35 chr21 34677552 34677689 -229881 + AluSq SINE Alu 1 140 -173 2352 85 3 0 chr21 34677689 34677982 -229588 + AluSp SINE Alu 1 294 -19 2137 118 24 0 chr21 34677987 34678276 -229294 + AluSg SINE Alu 1 296 -14 2223 95 6 35 chr21 34678276 34678447 -229123 + AluSq SINE Alu 144 306 -7 1537 172 26 8 chr21 34678559 34678827 -228743 - AluJo SINE Alu -39 273 1 654 159 9 9 chr21 34678836 34678949 -228621 - L1MC1 LINE L1 -13 6320 6208 1598 165 89 21 chr21 34679529 34679856 -227714 + MLT1B LTR MaLR 35 383 -7 963 184 68 0 chr21 34680370 34680560 -227010 + MER3 DNA MER1_type 3 205 -4 1195 191 42 0 chr21 34680749 34680964 -226606 + AluJb SINE Alu 72 295 -17 2416 109 0 0 chr21 34681000 34681312 -226258 - AluSx SINE Alu 0 312 1 334 313 112 44 chr21 34681448 34681990 -225580 - L2 LINE L2 -607 2707 2066 630 179 0 90 chr21 34682133 34682278 -225292 - FLAM_A SINE Alu -1 132 1 2329 69 10 36 chr21 34683450 34683753 -223817 + AluY SINE Alu 1 295 -16 2006 138 3 13 chr21 34684149 34684453 -223117 - AluSx SINE Alu -11 301 1 2040 102 58 0 chr21 34684761 34685036 -222534 + AluSg SINE Alu 3 293 -17 225 0 0 0 chr21 34685040 34685065 -222505 + (TG)n Simple_repeat Simple_repeat 2 26 0 2156 109 3 32 chr21 34685066 34685379 -222191 - AluSx SINE Alu -8 304 1 817 240 24 62 chr21 34685575 34685712 -221858 - L1M4 LINE L1 -1407 4739 4598 2491 61 3 0 chr21 34685712 34686007 -221563 - AluSp SINE Alu -16 297 2 817 240 24 62 chr21 34686007 34686206 -221364 - L1M4 LINE L1 -1548 4598 4416 1774 154 20 27 chr21 34687036 34687329 -220241 - AluJo SINE Alu -21 291 1 2416 98 33 19 chr21 34687608 34687967 -219603 - THE1B LTR MaLR 0 364 1 610 134 54 18 chr21 34688474 34688586 -218984 + FRAM SINE Alu 60 175 -1 2496 213 31 10 chr21 34688586 34689183 -218387 - L1MD2 LINE L1 -117 6047 5428 757 199 49 37 chr21 34689195 34689265 -218305 + L1MC/D LINE L1 3118 3186 -2960 2373 98 7 0 chr21 34689265 34689571 -217999 + AluSx SINE Alu 1 308 -4 757 199 49 37 chr21 34689571 34689746 -217824 + L1MC/D LINE L1 3186 3366 -2780 2143 168 73 5 chr21 34689755 34690166 -217404 + Tigger3b DNA MER2_type 3 441 -790 1595 201 91 30 chr21 34691757 34692186 -215384 - L1ME1 LINE L1 -3 6163 5709 314 143 0 0 chr21 34692452 34692501 -215069 - FLAM SINE Alu -7 126 78 189 0 0 0 chr21 34692733 34692754 -214816 + (TG)n Simple_repeat Simple_repeat 2 22 0 503 248 97 71 chr21 34692962 34693287 -214283 + L1MC/D LINE L1 4911 5247 -899 2400 102 0 0 chr21 34693287 34693591 -213979 + AluSg SINE Alu 1 304 -6 503 248 97 71 chr21 34693591 34693616 -213954 + L1MC/D LINE L1 5247 5270 -876 1598 184 41 0 chr21 34693719 34693985 -213585 - AluJo SINE Alu -30 282 6 644 293 60 21 chr21 34696047 34696371 -211199 + L1MC/D LINE L1 5351 5635 -486 218 167 0 0 chr21 34696559 34696595 -210975 + (CA)n Simple_repeat Simple_repeat 2 37 0 246 193 0 0 chr21 34696595 34696652 -210918 + (TG)n Simple_repeat Simple_repeat 1 57 0 450 284 77 0 chr21 34697011 34697166 -210404 - MLT1G LTR MaLR -392 198 32 23 0 0 0 chr21 34699056 34699079 -208491 + AT_rich Low_complexity Low_complexity 1 23 0 2095 219 22 32 chr21 34699354 34699942 -207628 - L1MD2 LINE L1 -869 5277 4696 1405 192 33 60 chr21 34700027 34700177 -207393 + MLT1A2 LTR MaLR 18 171 -203 1748 138 105 0 chr21 34700177 34700453 -207117 + AluSg SINE Alu 1 305 -5 1405 192 33 60 chr21 34700453 34700667 -206903 + MLT1A2 LTR MaLR 171 372 -2 574 287 97 4 chr21 34700968 34701226 -206344 - HAL1 LINE L1 -845 1662 1381 1270 255 75 74 chr21 34701822 34702525 -205045 - L1MC5 LINE L1 -620 7341 6638 601 0 22 33 chr21 34702620 34702676 -204894 + (TTCTC)n Simple_repeat Simple_repeat 1 146 0 601 0 22 33 chr21 34702676 34702768 -204802 + (TTCTC)n Simple_repeat Simple_repeat 5 95 0 2248 95 3 0 chr21 34702777 34703060 -204510 - AluSp SINE Alu -25 288 5 1460 179 45 39 chr21 34703100 34703288 -204282 - AluJo SINE Alu -2 310 118 2178 110 3 0 chr21 34703288 34703578 -203992 + AluSg SINE Alu 1 291 -19 1460 179 45 39 chr21 34703578 34703697 -203873 - AluJo SINE Alu -194 118 1 1622 99 36 0 chr21 34703964 34704186 -203384 + MER30 DNA MER1_type 1 230 0 281 256 58 70 chr21 34707270 34707426 -200144 - MIR3 SINE MIR -39 169 16 1744 179 0 32 chr21 34708911 34709219 -198351 - AluJo SINE Alu -14 298 1 1780 181 14 0 chr21 34709630 34709922 -197648 - AluJo SINE Alu -10 302 7 2387 90 0 0 chr21 34709934 34710234 -197336 - AluSx SINE Alu -2 310 11 2239 122 0 10 chr21 34710537 34710840 -196730 + AluSx SINE Alu 1 300 -12 2132 116 0 0 chr21 34711065 34711522 -196048 - AluSx SINE Alu 0 457 1 26 0 0 0 chr21 34712551 34712577 -194993 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr21 34712722 34712764 -194806 + AT_rich Low_complexity Low_complexity 1 42 0 3206 220 33 47 chr21 34712768 34712823 -194747 - L1ME1 LINE L1 -5 6161 6107 2251 87 0 7 chr21 34712823 34713110 -194460 + AluY SINE Alu 1 285 -26 3206 220 33 47 chr21 34713110 34713622 -193948 - L1ME1 LINE L1 -59 6107 5608 2111 127 3 3 chr21 34713622 34713914 -193656 - AluSx SINE Alu -20 292 1 3206 220 33 47 chr21 34713914 34714223 -193347 - L1ME1 LINE L1 -558 5608 5296 387 0 0 0 chr21 34714223 34714266 -193304 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 2079 222 49 23 chr21 34714266 34714288 -193282 - L1ME1 LINE L1 -847 5299 5279 1738 125 103 0 chr21 34714288 34714569 -193001 - AluSg SINE Alu 0 310 1 2079 222 49 23 chr21 34714569 34715179 -192391 - L1ME1 LINE L1 -867 5279 4690 1505 142 24 133 chr21 34715195 34715534 -192036 - AluSx SINE Alu 0 302 1 1586 179 13 33 chr21 34715539 34715840 -191730 - AluJo SINE Alu -17 295 1 2466 53 0 0 chr21 34715850 34716133 -191437 - AluY SINE Alu -7 304 22 394 273 40 0 chr21 34716136 34716235 -191335 - Charlie1a DNA MER1_type -1351 104 2 2283 102 7 0 chr21 34716237 34716541 -191029 + AluSc SINE Alu 1 306 -3 3547 69 9 4 chr21 34717504 34717955 -189615 - MLT2A2 LTR ERVL 0 453 1 2492 75 0 10 chr21 34718124 34718429 -189141 - AluY SINE Alu -9 302 1 415 243 0 19 chr21 34719342 34719449 -188121 - L1ME3A LINE L1 -204 5966 5862 333 227 184 35 chr21 34719458 34719599 -187971 - L1ME3A LINE L1 -43 6196 6035 3060 251 83 62 chr21 34719641 34720126 -187444 - L1ME3A LINE L1 -336 5895 5422 1672 136 18 100 chr21 34720126 34720456 -187114 - AluJo SINE Alu -9 303 1 3060 251 83 62 chr21 34720456 34721169 -186401 - L1ME3A LINE L1 -809 5422 4726 1421 118 4 49 chr21 34721169 34721415 -186155 + MER46A DNA MER2_type 2 236 0 3060 251 83 62 chr21 34721415 34721650 -185920 - L1ME3A LINE L1 -1505 4726 4497 2440 61 3 10 chr21 34721650 34721946 -185624 + AluY SINE Alu 2 295 -16 3060 251 83 62 chr21 34721946 34722600 -184970 - L1ME3A LINE L1 -1734 4497 3759 1571 193 7 3 chr21 34723036 34723332 -184238 - AluJb SINE Alu -15 297 1 335 288 51 8 chr21 34723376 34723494 -184076 - L1ME3A LINE L1 -4453 1762 1640 435 271 59 75 chr21 34723729 34723981 -183589 - L1MEc LINE L1 -4901 1357 1120 2398 88 0 7 chr21 34723981 34724289 -183281 - AluY SINE Alu -5 306 1 435 271 59 75 chr21 34724289 34724547 -183023 - L1MEc LINE L1 -5138 1120 859 2050 124 9 53 chr21 34724551 34724874 -182696 - AluJb SINE Alu -3 309 1 273 271 73 4 chr21 34725543 34725683 -181887 - L1ME3A LINE L1 -281 5883 5726 335 311 25 8 chr21 34725684 34725806 -181764 - L1ME3A LINE L1 -447 5723 5600 611 259 70 13 chr21 34725832 34726060 -181510 - L1ME3A LINE L1 -605 5557 5317 2085 146 0 0 chr21 34726071 34726358 -181212 + AluSx SINE Alu 1 287 -25 3437 126 9 6 chr21 34726367 34726916 -180654 - MER41B LTR ERV1 -84 551 1 3033 98 31 35 chr21 34726916 34727359 -180211 - MER41B-int LTR ERV1 0 5946 5504 2622 71 0 0 chr21 34727359 34727670 -179900 - AluY SINE Alu 0 311 1 3033 98 31 35 chr21 34727670 34727708 -179862 - MER41B-int LTR ERV1 -442 5504 5467 7832 113 38 29 chr21 34727711 34728677 -178893 - MER41B-int LTR ERV1 -1354 4592 3793 2322 123 0 0 chr21 34728677 34728985 -178585 - AluSx SINE Alu -4 308 1 7832 113 38 29 chr21 34728985 34729517 -178053 - MER41B-int LTR ERV1 -2153 3793 3267 4335 110 49 6 chr21 34729517 34730358 -177212 - MER41B-int LTR ERV1 -2890 3166 2354 255 111 89 0 chr21 34730359 34730404 -177166 - MER41B-int LTR ERV1 -3934 2012 1964 25 0 0 0 chr21 34730404 34730429 -177141 + AT_rich Low_complexity Low_complexity 1 25 0 2343 85 3 0 chr21 34730429 34730711 -176859 - AluSp SINE Alu -20 293 11 2061 81 27 68 chr21 34730724 34731041 -176529 - AluSg SINE Alu 0 305 1 405 168 243 9 chr21 34731041 34731148 -176422 - MER41B-int LTR ERV1 -3970 1976 1845 1208 151 41 0 chr21 34731124 34731342 -176228 - MER41B-int LTR ERV1 -4328 1618 1392 4396 117 23 18 chr21 34731343 34732029 -175541 - MER41B-int LTR ERV1 -5256 690 1 1010 117 0 0 chr21 34732029 34732183 -175387 - MER41B LTR ERV1 0 635 482 1742 276 97 62 chr21 34732208 34732371 -175199 - L1ME3A LINE L1 -860 5286 5130 2174 131 3 3 chr21 34732371 34732683 -174887 - AluSx SINE Alu 0 312 1 1742 276 97 62 chr21 34732683 34733115 -174455 - L1ME3A LINE L1 -1016 5130 4715 654 157 20 0 chr21 34733115 34733217 -174353 + U6 snRNA snRNA 2 105 -2 1742 276 97 62 chr21 34733217 34733360 -174210 - L1ME3A LINE L1 -1431 4715 4578 2335 80 0 7 chr21 34733360 34733707 -173863 - AluSq SINE Alu 0 345 1 1742 276 97 62 chr21 34733707 34733894 -173676 - L1ME3A LINE L1 -1568 4578 4399 2088 125 7 3 chr21 34733894 34734191 -173379 - AluSq SINE Alu -15 298 1 1742 276 97 62 chr21 34734191 34734744 -172826 - L1ME3A LINE L1 -1747 4399 3752 2153 123 10 3 chr21 34734822 34735122 -172448 - AluSx SINE Alu -10 302 1 189 269 0 0 chr21 34735932 34735999 -171571 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 1816 141 79 3 chr21 34736034 34736324 -171246 - AluSx SINE Alu 0 312 1 2281 106 3 3 chr21 34736814 34737116 -170454 + AluSx SINE Alu 1 302 -10 924 211 45 0 chr21 34737415 34737614 -169956 - MER3 DNA MER1_type 0 209 2 471 258 99 133 chr21 34737736 34738171 -169399 + HAL1 LINE L1 738 1157 -1350 520 281 76 19 chr21 34738310 34738573 -168997 + HAL1 LINE L1 1453 1730 -777 302 253 77 11 chr21 34741311 34741402 -166168 - MER3 DNA MER1_type 0 209 113 291 77 0 19 chr21 34742763 34742815 -164755 - L1MA7 LINE L1 -3 6288 6238 787 186 0 0 chr21 34742935 34743059 -164511 + FLAM_C SINE Alu 2 125 -18 24 53 0 0 chr21 34743065 34743103 -164467 + AT_rich Low_complexity Low_complexity 1 38 0 1899 180 7 0 chr21 34743292 34743598 -163972 + 7SLRNA srpRNA srpRNA 1 308 -12 2408 116 0 0 chr21 34744118 34744428 -163142 + AluSx SINE Alu 1 310 -2 2462 89 0 3 chr21 34748228 34748532 -159038 + AluSq SINE Alu 1 303 -10 284 218 0 39 chr21 34748707 34748785 -158785 - MLT1G LTR MaLR -54 488 414 376 280 27 43 chr21 34748850 34749036 -158534 - MLT1G LTR MaLR -292 298 116 929 85 0 0 chr21 34749450 34749568 -158002 - AluSc SINE Alu -16 293 176 1246 239 72 41 chr21 34751776 34752194 -155376 - LTR47B LTR ERVL 0 443 13 24 32 0 0 chr21 34752430 34752461 -155109 + AT_rich Low_complexity Low_complexity 1 31 0 821 176 35 70 chr21 34753813 34754040 -153530 + MER20 DNA MER1_type 1 219 0 1960 134 10 22 chr21 34755153 34755466 -152104 - AluJo SINE Alu -3 309 1 324 48 0 0 chr21 34755671 34755713 -151857 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr21 34756930 34756951 -150619 + AT_rich Low_complexity Low_complexity 1 21 0 1135 175 106 20 chr21 34757510 34757802 -149768 - L1MA7 LINE L1 0 6291 5975 1028 76 0 0 chr21 34761384 34761503 -146067 + AluSq/x SINE Alu 7 125 -188 2371 86 0 7 chr21 34763898 34764201 -143369 + AluSc SINE Alu 1 301 -8 2324 110 7 0 chr21 34766312 34766620 -140950 + AluSx SINE Alu 1 310 -2 236 182 0 23 chr21 34770738 34770782 -136788 - MIR SINE MIR -108 154 112 2409 85 0 0 chr21 34775734 34776029 -131541 + AluY SINE Alu 1 295 -16 23 54 0 0 chr21 34777411 34777448 -130122 + AT_rich Low_complexity Low_complexity 1 37 0 1648 126 81 36 chr21 34778259 34778496 -129074 + L1MEc LINE L1 1263 1519 -4865 2035 153 21 24 chr21 34778496 34778830 -128740 + MER1B DNA MER1_type 5 337 0 1648 126 81 36 chr21 34778830 34778901 -128669 + L1MEc LINE L1 1519 1585 -4799 5350 78 0 1 chr21 34778896 34779593 -127977 - L1P LINE L1 -1495 4651 3956 1689 131 146 0 chr21 34779593 34779936 -127634 + Tigger3(Golem) DNA MER2_type 2331 2723 -306 2032 132 121 6 chr21 34779951 34780291 -127279 + MSTC LTR MaLR 47 425 -3 1666 151 48 32 chr21 34780291 34780592 -126978 + Tigger3(Golem) DNA MER2_type 2723 3028 -1 8028 213 86 22 chr21 34780640 34780875 -126695 + L1M4c LINE L1 2271 2490 -3892 1619 177 61 7 chr21 34780875 34781169 -126401 + AluJb SINE Alu 3 312 0 8028 213 86 22 chr21 34781169 34783460 -124110 + L1M4c LINE L1 2490 4947 -1435 370 264 112 0 chr21 34783496 34783621 -123949 + L1MEc LINE L1 1785 1923 -4640 25891 163 10 16 chr21 34783619 34785527 -122043 - L1PA10 LINE L1 -8 6475 4556 2451 87 0 0 chr21 34785527 34785826 -121744 + AluSc SINE Alu 1 299 -10 25891 163 10 16 chr21 34785826 34790254 -117316 - L1PA10 LINE L1 -1927 4556 14 2732 218 84 52 chr21 34790389 34791033 -116537 + L1MEc LINE L1 2385 3007 -3375 1598 214 52 18 chr21 34791033 34791416 -116154 + MSTD LTR MaLR 1 396 0 2732 218 84 52 chr21 34791416 34792143 -115427 + L1MEc LINE L1 3007 3710 -2672 369 0 0 0 chr21 34792143 34792184 -115386 + (TA)n Simple_repeat Simple_repeat 2 42 0 2458 82 13 0 chr21 34792184 34792488 -115082 - AluY SINE Alu -3 308 1 2732 218 84 52 chr21 34792488 34792767 -114803 + L1MEc LINE L1 3709 4137 -2245 412 156 25 2 chr21 34792771 34792845 -114725 + LTR28 LTR ERV1 7 94 -542 770 218 56 0 chr21 34792864 34793043 -114527 + L1PB1 LINE L1 6 194 -6669 13971 187 33 14 chr21 34793043 34795063 -112507 + L1PB1 LINE L1 903 2885 -3982 2164 83 43 4 chr21 34795063 34795340 -112230 + AluY SINE Alu 1 288 -23 13971 187 33 14 chr21 34795340 34798732 -108838 + L1PB1 LINE L1 2885 6214 -653 1796 112 63 112 chr21 34798732 34799115 -108455 + THE1B LTR MaLR 1 364 0 11663 98 9 1 chr21 34799115 34800682 -106888 + THE1B-int LTR MaLR 1 1580 0 2074 119 58 47 chr21 34800682 34801042 -106528 + THE1B LTR MaLR 1 364 0 13971 187 33 14 chr21 34801042 34801212 -106358 + L1PB1 LINE L1 6213 6867 0 2341 209 55 52 chr21 34801242 34801506 -106064 + LTR28 LTR ERV1 85 347 -673 2378 72 7 0 chr21 34801506 34801798 -105772 + AluY SINE Alu 1 294 -17 2341 209 55 52 chr21 34801798 34802154 -105416 + LTR28 LTR ERV1 347 707 -313 252 179 107 0 chr21 34802250 34802334 -105236 + L1M4 LINE L1 3951 4043 -2103 2150 69 0 0 chr21 34805850 34806110 -101460 - AluSg SINE Alu -17 293 34 1909 146 7 16 chr21 34807755 34808063 -99507 + AluJb SINE Alu 1 305 -7 204 167 0 0 chr21 34813233 34813269 -94301 - L3 LINE CR1 -7 1570 1535 700 278 50 39 chr21 34814713 34815084 -92486 + HERVL LTR ERVL 1511 1821 -3833 1964 296 33 12 chr21 34815322 34815547 -92023 + HERVL LTR ERVL 2195 2414 -3071 3114 178 18 9 chr21 34815547 34816098 -91472 - MER41D LTR ERV1 0 557 2 1964 296 33 12 chr21 34816098 34816694 -90876 + HERVL LTR ERVL 2414 3031 -2454 1879 276 48 12 chr21 34816936 34817534 -90036 + HERVL LTR ERVL 3379 3998 -1766 662 253 101 97 chr21 34817904 34818359 -89211 - LTR40c LTR ERVL -7 458 2 476 149 74 58 chr21 34818507 34818628 -88942 + LTR41 LTR ERVL 650 772 -1 2679 45 0 3 chr21 34818713 34819022 -88548 + AluY SINE Alu 1 308 -3 3381 216 31 6 chr21 34819101 34820428 -87142 - L1MCa LINE L1 -3016 3410 1867 5885 116 29 47 chr21 34820428 34821089 -86481 - L1PA13 LINE L1 -1 6162 5508 2145 91 3 88 chr21 34821089 34821430 -86140 - AluSx SINE Alu 0 312 1 5885 116 29 47 chr21 34821430 34821929 -85641 - L1PA13 LINE L1 -655 5508 5002 11523 165 12 20 chr21 34821941 34823320 -84250 - L1PA13 LINE L1 -1927 4219 2863 2091 162 0 0 chr21 34823320 34823628 -83942 - AluSx SINE Alu -4 308 1 11523 165 12 20 chr21 34823628 34824389 -83181 - L1PA13 LINE L1 -3283 2863 2097 790 142 90 39 chr21 34824389 34824550 -83020 - L1MCa LINE L1 -4550 1876 1610 2803 73 24 14 chr21 34824550 34824921 -82649 - THE1C LTR MaLR 0 375 1 790 142 90 39 chr21 34824921 34824951 -82619 - L1MCa LINE L1 -4816 1610 1583 4145 145 36 34 chr21 34824954 34825262 -82308 + Tigger3b DNA MER2_type 5 311 -2717 539 15 15 0 chr21 34825262 34825330 -82240 + (TCTA)n Simple_repeat Simple_repeat 4 72 0 4145 145 36 34 chr21 34825330 34825770 -81800 + Tigger3b DNA MER2_type 311 757 -2271 2251 122 0 0 chr21 34825770 34826072 -81498 - AluSx SINE Alu -9 303 2 4145 145 36 34 chr21 34826072 34826109 -81461 + Tigger3b DNA MER2_type 757 792 -439 611 184 0 72 chr21 34826112 34826237 -81333 + FLAM_C SINE Alu 3 118 -25 180 0 0 0 chr21 34826237 34826257 -81313 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 318 206 15 15 chr21 34826257 34826325 -81245 + Tigger3b DNA MER2_type 785 852 -379 2448 162 32 16 chr21 34826347 34826779 -80791 + Tigger3b DNA MER2_type 792 1230 -1 7546 159 67 19 chr21 34826780 34828274 -79296 - L1MCa LINE L1 -4841 1585 21 2110 120 14 0 chr21 34830410 34830702 -76868 + AluSx SINE Alu 16 311 -1 2038 103 44 11 chr21 34830884 34831157 -76413 + AluSq SINE Alu 1 282 -31 27 0 0 0 chr21 34831157 34831184 -76386 + AT_rich Low_complexity Low_complexity 1 27 0 253 206 73 0 chr21 34832417 34832485 -75085 - MIR SINE MIR -188 74 2 1953 159 10 0 chr21 34832551 34832841 -74729 - AluSx SINE Alu -19 293 1 322 209 165 44 chr21 34832841 34832932 -74638 - MLT1G1 LTR MaLR -490 105 4 256 320 58 32 chr21 34833441 34833597 -73973 - MLT1-int LTR MaLR -525 846 687 435 235 186 6 chr21 34834181 34834364 -73206 - MLT1G LTR MaLR 0 590 375 398 245 98 33 chr21 34834464 34834648 -72922 - MLT1G LTR MaLR -376 214 19 2598 98 8 19 chr21 34834696 34835073 -72497 - THE1C LTR MaLR -2 373 1 1659 174 33 76 chr21 34835074 34835162 -72408 + MLT1B LTR MaLR 7 97 -293 2421 149 71 2 chr21 34835162 34835585 -71985 - LTR47A LTR ERVL 0 452 1 1659 174 33 76 chr21 34835585 34835892 -71678 + MLT1B LTR MaLR 97 385 -5 896 242 109 39 chr21 34835940 34836225 -71345 - MLT1E LTR MaLR -221 372 68 610 287 75 39 chr21 34836250 34836609 -70961 + LTR52 LTR ERVL 35 406 -15 656 259 76 57 chr21 34836882 34837279 -70291 - L1M4 LINE L1 -3568 2578 2169 2096 132 0 20 chr21 34837279 34837583 -69987 + AluSx SINE Alu 1 298 -14 656 259 76 57 chr21 34837583 34837644 -69926 - L1M4 LINE L1 -3977 2169 2111 713 74 0 0 chr21 34837662 34837757 -69813 - L1PA7 LINE L1 -2 6152 6058 22 0 0 0 chr21 34837826 34837848 -69722 + AT_rich Low_complexity Low_complexity 1 22 0 6518 54 16 4 chr21 34838302 34839130 -68440 - L1PA7 LINE L1 0 6154 5317 921 125 0 0 chr21 34839106 34839285 -68285 - L1P3 LINE L1 -4687 1459 1289 10543 137 82 59 chr21 34839287 34840647 -66923 - MER4A-int LTR ERV1 -4192 2406 968 1995 136 10 7 chr21 34840647 34840942 -66628 + AluSx SINE Alu 1 296 -16 10543 137 82 59 chr21 34840942 34841933 -65637 - MER4A-int LTR ERV1 -5630 968 1 1843 155 42 96 chr21 34841936 34842582 -64988 - MER4A LTR ERV1 0 664 9 22 35 0 0 chr21 34843098 34843127 -64443 + GC_rich Low_complexity Low_complexity 1 29 0 290 172 31 0 chr21 34845240 34845304 -62266 + (TATATG)n Simple_repeat Simple_repeat 5 70 0 849 213 7 0 chr21 34845318 34845473 -62097 + FAM SINE Alu 16 171 -14 330 232 57 2 chr21 34845864 34845973 -61597 - L1MC/D LINE L1 -369 5855 5748 367 327 111 10 chr21 34845978 34846177 -61393 - L1MC/D LINE L1 -2170 5707 5489 1707 229 119 59 chr21 34846255 34847184 -60386 - L1M4 LINE L1 -2856 3290 2284 309 26 0 0 chr21 34847184 34847222 -60348 + (TG)n Simple_repeat Simple_repeat 2 39 0 1707 229 119 59 chr21 34847222 34847389 -60181 - L1M4 LINE L1 -3862 2284 2128 564 297 79 23 chr21 34847600 34847903 -59667 - L1MC/D LINE L1 -4391 2005 1686 2112 69 0 8 chr21 34847933 34848194 -59376 - AluY SINE Alu -9 302 44 428 312 69 5 chr21 34848203 34848392 -59178 - L1MC/D LINE L1 -5061 1335 1135 933 157 0 0 chr21 34848495 34848635 -58935 + AluJb SINE Alu 160 299 -13 2056 129 0 23 chr21 34848900 34849209 -58361 + AluSx SINE Alu 1 302 -10 270 81 0 0 chr21 34849214 34849251 -58319 + (TG)n Simple_repeat Simple_repeat 2 38 0 2090 133 0 13 chr21 34850235 34850543 -57027 + AluSx SINE Alu 1 304 -8 1178 224 53 29 chr21 34852075 34852356 -55214 - MER58B DNA MER1_type -53 288 1 1665 143 3 95 chr21 34852448 34852784 -54786 + AluJo SINE Alu 1 305 -7 822 204 12 12 chr21 34852814 34852976 -54594 + FRAM SINE Alu 1 162 -14 2066 142 10 0 chr21 34853199 34853508 -54062 - AluSx SINE Alu 0 312 1 277 259 109 65 chr21 34854090 34854291 -53279 - L1MC/D LINE L1 -2050 5758 5549 571 191 33 5 chr21 34854296 34854454 -53116 - MLT1A1 LTR MaLR -3 362 225 267 296 28 0 chr21 34854505 34854576 -52994 - MLT1A1 LTR MaLR -323 73 1 685 224 17 23 chr21 34854984 34855158 -52412 - FRAM SINE Alu -3 173 1 22 88 0 0 chr21 34855184 34855241 -52329 + AT_rich Low_complexity Low_complexity 1 57 0 195 100 0 0 chr21 34861416 34861446 -46124 + (T)n Simple_repeat Simple_repeat 1 30 0 377 208 60 37 chr21 34861630 34861881 -45689 + L1ME4a LINE L1 5642 5942 -179 236 339 28 9 chr21 34861893 34862002 -45568 + L1MD2 LINE L1 10 120 -6289 1132 192 20 0 chr21 34862160 34862363 -45207 - MER2 DNA MER2_type -137 207 1 2058 228 44 15 chr21 34862459 34863077 -44493 + L1MD2 LINE L1 3649 4284 -2122 406 220 93 0 chr21 34863208 34863326 -44244 + L1MD2 LINE L1 4645 4773 -1633 420 254 51 22 chr21 34863327 34863465 -44105 + L1MD2 LINE L1 4792 4933 -1473 2236 142 52 32 chr21 34863472 34863879 -43691 + MSTB1 LTR MaLR 16 430 -2 2703 238 77 23 chr21 34863879 34865260 -42310 + L1MD2 LINE L1 4927 6382 -237 397 217 80 46 chr21 34865316 34865491 -42079 + L1ME4a LINE L1 5930 6110 -11 540 211 28 0 chr21 34865625 34865734 -41836 - MER45B DNA AcHobo -623 417 306 23 68 0 0 chr21 34867017 34867061 -40509 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr21 34867444 34867466 -40104 + AT_rich Low_complexity Low_complexity 1 22 0 373 200 6 73 chr21 34869438 34869603 -37967 + G-rich Low_complexity Low_complexity 6 159 0 218 204 23 0 chr21 34872397 34872441 -35129 + L2 LINE L2 3269 3313 0 23 78 0 0 chr21 34872567 34872618 -34952 + AT_rich Low_complexity Low_complexity 1 51 0 1899 135 0 20 chr21 34872618 34872922 -34648 + AluJo SINE Alu 1 298 -14 289 317 29 0 chr21 34872923 34873027 -34543 - L1ME3A LINE L1 -15 6155 6049 572 258 44 26 chr21 34873112 34873383 -34187 - L1ME3A LINE L1 -241 5923 5648 327 251 58 29 chr21 34873504 34873675 -33895 - L1ME3A LINE L1 -726 5436 5261 288 0 0 0 chr21 34873729 34873761 -33809 + (T)n Simple_repeat Simple_repeat 1 32 0 2297 92 3 0 chr21 34873797 34874101 -33469 - AluSx SINE Alu -7 305 1 777 205 0 0 chr21 34874190 34874317 -33253 + AluJo SINE Alu 9 135 -177 1975 104 0 0 chr21 34874317 34874586 -32984 + AluSx SINE Alu 1 269 -43 5533 19 0 0 chr21 34876262 34876881 -30689 - L1PA3 LINE L1 -4 6151 5533 1010 235 53 67 chr21 34878908 34879430 -28140 - MLT1E2 LTR MaLR 0 525 31 232 296 0 45 chr21 34879484 34879572 -27998 - L1ME LINE L1 -524 5646 5563 820 243 68 34 chr21 34879587 34880011 -27559 - L1ME LINE L1 -1330 4816 4356 1322 147 29 109 chr21 34880011 34880324 -27246 + AluJo SINE Alu 1 288 -24 820 243 68 34 chr21 34880324 34880399 -27171 - L1ME LINE L1 -1790 4356 4285 2202 206 9 7 chr21 34880440 34881016 -26554 + L1MA4A LINE L1 5643 6280 -23 308 347 0 0 chr21 34881123 34881247 -26323 - MIR SINE MIR -15 247 124 22 56 0 0 chr21 34881654 34881690 -25880 + AT_rich Low_complexity Low_complexity 1 36 0 252 284 29 17 chr21 34882079 34882184 -25386 + GA-rich Low_complexity Low_complexity 1 106 0 412 312 82 19 chr21 34882556 34882808 -24762 + L2 LINE L2 2731 3017 -296 1627 120 0 47 chr21 34882808 34883082 -24488 - AluSx SINE Alu -8 304 44 412 312 82 19 chr21 34883082 34883245 -24325 + L2 LINE L2 3017 3168 -145 7330 47 9 6 chr21 34883906 34885202 -22368 - L1PA7 LINE L1 0 6154 4854 856 243 66 3 chr21 34885277 34885565 -22005 + L1ME2 LINE L1 5622 5927 -239 1304 150 58 68 chr21 34885565 34885858 -21712 - AluJb SINE Alu -14 298 9 399 254 88 37 chr21 34885872 34886089 -21481 + L1ME2 LINE L1 5928 6155 -9 345 283 133 29 chr21 34887270 34887443 -20127 + HAL1 LINE L1 164 354 -2153 366 280 68 23 chr21 34887597 34887729 -19841 + HAL1 LINE L1 537 674 -1833 445 194 19 19 chr21 34887926 34888029 -19541 + MER74A LTR ERVL 145 247 -311 22 35 0 0 chr21 34888749 34888778 -18792 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr21 34890198 34890244 -17326 + (A)n Simple_repeat Simple_repeat 1 46 0 234 287 0 17 chr21 34890587 34890768 -16802 + (TTAGGG)n Simple_repeat Simple_repeat 2 179 0 1692 160 10 14 chr21 34891455 34891749 -15821 - MER4A LTR ERV1 0 664 372 618 122 10 10 chr21 34891801 34891899 -15671 - MER4A LTR ERV1 -566 98 1 1400 175 54 72 chr21 34892767 34893156 -14414 - L1MC3 LINE L1 -1 7784 7403 1128 242 68 11 chr21 34893165 34893533 -14037 - L1MC3 LINE L1 -490 7295 6927 441 279 98 0 chr21 34893536 34893658 -13912 - L1MC4a LINE L1 -940 6868 6735 1580 255 30 11 chr21 34893658 34894120 -13450 - L1MC3 LINE L1 -1100 6685 6272 1773 169 43 70 chr21 34894123 34894567 -13003 - MSTB1 LTR MaLR 0 432 1 227 292 0 15 chr21 34894676 34894741 -12829 - L1MC4 LINE L1 -1913 6129 6066 914 226 17 17 chr21 34894742 34894972 -12598 - L1MC4 LINE L1 -1794 5991 5762 296 182 9 91 chr21 34895099 34895209 -12361 - MER72-int LTR ERV1 -561 4375 4275 1416 143 0 0 chr21 34895212 34895435 -12135 - AluJb SINE Alu -22 290 68 2060 199 32 7 chr21 34895474 34895905 -11665 - MER72-int LTR ERV1 -636 4300 3859 1339 260 44 8 chr21 34895943 34896305 -11265 - LTR10C LTR ERV1 -29 562 188 297 0 0 0 chr21 34896325 34896358 -11212 + (CA)n Simple_repeat Simple_repeat 2 34 0 3064 214 44 73 chr21 34896414 34897206 -10364 - MER72-int LTR ERV1 -1063 3873 3112 2207 103 0 0 chr21 34897206 34897506 -10064 - AluY SINE Alu -10 301 2 3064 214 44 73 chr21 34897506 34897676 -9894 - MER72-int LTR ERV1 -1824 3112 2939 1256 191 88 64 chr21 34897734 34898201 -9369 - MER72-int LTR ERV1 -2760 2176 1699 1562 208 20 27 chr21 34898805 34899252 -8318 - MER72-int LTR ERV1 -3430 1506 1063 330 221 29 0 chr21 34899255 34899323 -8247 + MLT2B3 LTR ERVL 3 72 -482 404 147 29 0 chr21 34899348 34899416 -8154 + MLT2B3 LTR ERVL 3 72 -482 371 162 29 0 chr21 34899441 34899509 -8061 + MLT2B3 LTR ERVL 3 72 -482 344 191 29 0 chr21 34899627 34899695 -7875 + MLT2B3 LTR ERVL 3 72 -482 333 167 61 0 chr21 34899720 34899786 -7784 + MLT2B3 LTR ERVL 3 72 -482 417 147 29 0 chr21 34899811 34899879 -7691 + MLT2B3 LTR ERVL 3 72 -482 354 191 29 0 chr21 34899904 34899972 -7598 + MLT2B3 LTR ERVL 3 72 -482 354 191 29 0 chr21 34899997 34900065 -7505 + MLT2B3 LTR ERVL 3 72 -482 2150 220 72 23 chr21 34900090 34900224 -7346 + MLT2B2 LTR ERVL 3 129 -386 2224 144 41 6 chr21 34900224 34900586 -6984 + THE1C LTR MaLR 1 375 0 2150 220 72 23 chr21 34900586 34900937 -6633 + MLT2B2 LTR ERVL 129 512 -3 660 266 23 28 chr21 34900943 34901308 -6262 - MER72-int LTR ERV1 -3873 1063 620 886 266 50 35 chr21 34901283 34901621 -5949 - MER72-int LTR ERV1 -4421 515 173 3870 139 72 50 chr21 34902023 34902088 -5482 - MER72 LTR ERV1 0 722 660 2159 98 3 3 chr21 34902088 34902384 -5186 - AluSq SINE Alu -15 298 3 3870 139 72 50 chr21 34902384 34903024 -4546 - MER72 LTR ERV1 -62 660 1 556 255 21 16 chr21 34903233 34903421 -4149 - L1MC/D LINE L1 -2020 5765 5577 748 185 57 24 chr21 34903426 34903637 -3933 - MER34B LTR ERV1 -2 563 346 248 274 0 0 chr21 34903887 34903949 -3621 - MER34 LTR ERV1 -477 65 4 1233 227 75 21 chr21 34904024 34904604 -2966 - L1MC/D LINE L1 -745 5401 4898 2690 16 0 0 chr21 34904837 34905141 -2429 + AluYb8 SINE Alu 5 308 -10 623 154 43 8 chr21 34905141 34905258 -2312 + LTR60 LTR ERV1 159 279 -307 8954 56 24 7 chr21 34905389 34906414 -1156 + TAR1 Satellite telomeric 1 1007 -1107 1458 78 0 0 chr21 34906414 34906914 -656 + SUBTEL_sat Satellite Satellite 1 500 0 8954 56 24 7 chr21 34906914 34907428 -142 + TAR1 Satellite telomeric 1007 2072 -42 1057 28 7 7 chr21 34907428 34907570 0 + (TTAGGG)n Simple_repeat Simple_repeat 1 142 0