201 219 31 0 chr21 427 491 -34907079 + (TA)n Simple_repeat Simple_repeat 1 66 0 837 58 117 0 chr21 1071 1191 -34906379 + MER85 DNA T2_type 4 137 -2 2853 185 47 7 chr21 2915 3509 -34904061 - MER54A LTR ERVL 0 901 284 931 107 0 0 chr21 3509 3630 -34903940 + FRAM SINE Alu 28 148 -28 1990 145 14 0 chr21 4278 4568 -34903002 - AluSx SINE Alu -18 294 1 2277 101 17 0 chr21 4620 4918 -34902652 - AluSc SINE Alu -6 303 1 21 0 0 0 chr21 4982 5003 -34902567 + AT_rich Low_complexity Low_complexity 1 21 0 2357 109 3 0 chr21 5702 6014 -34901556 + AluSp SINE Alu 1 313 0 724 194 0 2 chr21 6037 6293 -34901277 + AluJ SINE Alu 2 310 -2 285 29 0 0 chr21 6307 6341 -34901229 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 301 232 143 9 chr21 6589 6701 -34900869 - MIR SINE MIR -55 207 81 604 316 16 5 chr21 7495 7682 -34899888 + MER5A DNA MER1_type 1 189 0 2295 125 0 0 chr21 8426 8738 -34898832 + AluSx SINE Alu 1 312 0 2012 123 0 0 chr21 10808 11085 -34896485 + AluSx SINE Alu 11 287 -25 225 0 0 0 chr21 11088 11113 -34896457 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr21 12159 12186 -34895384 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 401 248 80 24 chr21 12447 12572 -34894998 + MIR SINE MIR 89 220 -42 566 224 66 86 chr21 12572 12979 -34894591 + L1MC5 LINE L1 7405 7803 -158 205 291 105 12 chr21 13154 13240 -34894330 + MIR SINE MIR 148 241 -21 252 0 0 0 chr21 13307 13335 -34894235 + (CA)n Simple_repeat Simple_repeat 2 29 0 183 42 0 0 chr21 13955 13979 -34893591 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1930 122 0 11 chr21 13982 14261 -34893309 - AluSx SINE Alu -36 276 1 482 278 16 42 chr21 14321 14512 -34893058 - MIR3 SINE MIR 0 208 23 370 279 9 9 chr21 14615 14726 -34892844 + MER112 DNA MER1_type 142 252 -8 622 170 119 6 chr21 15257 15416 -34892154 - MER96B DNA MER1_type? -238 179 3 580 177 0 0 chr21 15763 15859 -34891711 - AluSg/x SINE Alu -13 296 201 425 336 93 15 chr21 15870 16194 -34891376 + L1M4 LINE L1 3479 3827 -2319 2365 148 15 10 chr21 16195 16601 -34890969 + L1PA15-16 LINE L1 5 412 -6437 6455 122 33 10 chr21 16609 17761 -34889809 + L1PA15-16 LINE L1 1307 2484 -4365 745 164 138 48 chr21 17760 17991 -34889579 + L1P LINE L1 3756 4007 -2139 2322 104 3 0 chr21 17992 18289 -34889281 + AluSx SINE Alu 1 298 -14 2453 86 0 0 chr21 18291 18594 -34888976 + AluSq SINE Alu 1 303 -10 1700 164 22 3 chr21 18594 18906 -34888664 + L1PA16 LINE L1 5828 6145 -21 657 280 46 24 chr21 18980 19309 -34888261 + L1M4 LINE L1 3816 4151 -1995 1060 248 34 43 chr21 19566 20102 -34887468 + L1ME LINE L1 2640 3170 -2976 486 211 8 39 chr21 20106 20234 -34887336 + L1ME LINE L1 3194 3317 -2829 1735 244 121 61 chr21 20238 20881 -34886689 + L1ME LINE L1 3334 3937 -2209 1982 142 10 6 chr21 20881 21192 -34886378 - AluSx SINE Alu 0 312 1 1735 244 121 61 chr21 21192 21225 -34886345 + L1ME LINE L1 3937 3967 -2179 324 0 0 0 chr21 21225 21261 -34886309 + (CA)n Simple_repeat Simple_repeat 2 37 0 1735 244 121 61 chr21 21261 21496 -34886074 + L1ME LINE L1 3967 4187 -1959 1893 147 7 26 chr21 21496 21803 -34885767 + AluJb SINE Alu 1 301 -11 1735 244 121 61 chr21 21803 22308 -34885262 + L1ME LINE L1 4187 4836 -1310 286 239 0 23 chr21 22351 22439 -34885131 + L1P LINE L1 4914 4999 -1147 826 283 44 23 chr21 22672 23108 -34884462 + L1ME LINE L1 5262 5710 -452 2079 140 3 0 chr21 23108 23408 -34884162 + AluSx SINE Alu 1 301 -11 826 283 44 23 chr21 23408 23448 -34884122 + L1ME LINE L1 5710 5748 -414 1971 152 0 7 chr21 24108 24405 -34883165 + AluJb SINE Alu 3 297 -15 5313 139 42 34 chr21 25413 26644 -34880926 + L1MA8 LINE L1 4774 6024 -267 1592 124 124 16 chr21 26644 26901 -34880669 - AluSg1 SINE Alu -24 285 1 5313 139 42 34 chr21 26901 27172 -34880398 + L1MA8 LINE L1 6024 6291 0 322 313 20 0 chr21 27303 27402 -34880168 + CT-rich Low_complexity Low_complexity 2 102 0 426 39 0 0 chr21 29263 29315 -34878255 + (TA)n Simple_repeat Simple_repeat 1 52 0 3100 93 38 23 chr21 29916 30441 -34877129 - L1P4 LINE L1 -387 5787 5255 4264 230 32 25 chr21 30456 31641 -34875929 - L1PA12 LINE L1 -6379 1202 10 897 249 22 18 chr21 32125 32354 -34875216 + MLT1H LTR MaLR 72 301 -248 1492 103 34 0 chr21 32422 32656 -34874914 - L1MA5 LINE L1 -3 6297 6056 3091 190 15 31 chr21 32663 33663 -34873907 - L1 LINE L1 -3529 3319 2333 1951 156 3 7 chr21 33663 33970 -34873600 - AluSx SINE Alu -3 309 4 3091 190 15 31 chr21 33970 34089 -34873481 - L1 LINE L1 -4515 2333 2214 1915 167 10 0 chr21 34120 34413 -34873157 - AluSx SINE Alu -14 298 3 1946 212 31 9 chr21 34414 34961 -34872609 - L1 LINE L1 -4886 1963 1405 449 191 11 0 chr21 35337 35431 -34872139 + MLT1H LTR MaLR 433 527 -22 737 171 19 171 chr21 36775 37033 -34870537 + MER20 DNA MER1_type 1 219 0 676 224 33 77 chr21 37294 37477 -34870093 - MER5A DNA MER1_type -1 188 14 371 136 61 0 chr21 37968 38034 -34869536 - U2 snRNA snRNA -118 70 1 8129 148 21 23 chr21 38733 39145 -34868425 - L1MA2 LINE L1 -72 7651 7240 2473 80 0 0 chr21 39145 39446 -34868124 - AluSp SINE Alu -12 301 1 8129 148 21 23 chr21 39446 41605 -34865965 - L1MA2 LINE L1 -483 7240 5091 2165 134 0 0 chr21 41607 41913 -34865657 - AluSx SINE Alu -6 306 1 13779 132 29 14 chr21 41923 41966 -34865604 - L1MA2 LINE L1 -3890 3675 3634 2224 110 0 0 chr21 41966 42265 -34865305 - AluSc SINE Alu -8 301 3 13779 132 29 14 chr21 42265 44612 -34862958 - L1MA2 LINE L1 -3931 3634 1249 2014 113 0 0 chr21 44631 44897 -34862673 - AluSg SINE Alu -12 298 33 267 31 0 0 chr21 45114 45146 -34862424 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 216 67 0 0 chr21 46195 46225 -34861345 + (TA)n Simple_repeat Simple_repeat 2 31 0 2215 131 0 0 chr21 46237 46549 -34861021 - AluSx SINE Alu 0 312 1 5813 94 12 16 chr21 47568 48401 -34859169 + L1PA14 LINE L1 5332 6161 0 408 309 55 10 chr21 48842 49043 -34858527 + HAL1b LINE L1 466 675 -673 7825 44 1 1 chr21 49048 50098 -34857472 + L1PA5 LINE L1 5105 6154 0 2356 83 3 3 chr21 50635 50936 -34856634 + AluSc SINE Alu 1 301 -8 209 303 0 0 chr21 52421 52487 -34855083 + L2 LINE L2 2565 2630 -684 22 0 0 0 chr21 52508 52530 -34855040 + AT_rich Low_complexity Low_complexity 1 22 0 266 211 28 0 chr21 53733 53804 -34853766 + (TA)n Simple_repeat Simple_repeat 1 73 0 2091 156 71 6 chr21 53804 54169 -34853401 - Tigger1 DNA MER2_type -1 2417 2029 5338 224 46 26 chr21 54175 54698 -34852872 - L1 LINE L1 -2596 4571 4060 2432 58 7 7 chr21 54698 54990 -34852580 - L1PA5 LINE L1 -3 6151 5860 5338 224 46 26 chr21 54990 57130 -34850440 - L1 LINE L1 -3107 4060 1690 310 269 117 111 chr21 57285 58129 -34849441 - L1 LINE L1 -6025 1143 295 513 376 28 19 chr21 58438 58757 -34848813 - L1M2 LINE L1 -6336 513 192 476 328 73 15 chr21 58760 58964 -34848606 - L1 LINE L1 -6940 228 13 6968 143 35 19 chr21 58965 60128 -34847442 - Tigger1 DNA MER2_type -1236 1182 1 333 200 0 26 chr21 60129 60244 -34847326 + (TA)n Simple_repeat Simple_repeat 2 113 0 503 201 7 0 chr21 60293 60437 -34847133 + (TA)n Simple_repeat Simple_repeat 2 146 0 206 62 31 0 chr21 60480 60512 -34847058 + (TG)n Simple_repeat Simple_repeat 2 34 0 1818 138 7 4 chr21 61474 61749 -34845821 + AluSg SINE Alu 11 286 -24 26 30 0 0 chr21 61798 61831 -34845739 + AT_rich Low_complexity Low_complexity 1 33 0 756 33 0 0 chr21 63232 63323 -34844247 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 1833 163 7 3 chr21 64365 64666 -34842904 - AluSq SINE Alu -11 302 1 256 262 0 0 chr21 65586 65647 -34841923 + (TATG)n Simple_repeat Simple_repeat 2 62 0 2188 116 3 6 chr21 65815 66126 -34841444 - AluSg SINE Alu 0 310 1 219 36 0 0 chr21 67008 67036 -34840534 + (TGGA)n Simple_repeat Simple_repeat 2 29 0 2636 58 0 0 chr21 68147 68458 -34839112 - AluY SINE Alu 0 311 1 235 119 17 51 chr21 69228 69287 -34838283 + CT-rich Low_complexity Low_complexity 2 58 0 22 70 0 0 chr21 69327 69370 -34838200 + AT_rich Low_complexity Low_complexity 1 43 0 2062 132 7 0 chr21 69572 69859 -34837711 - AluSx SINE Alu -23 289 1 184 203 47 0 chr21 70499 70563 -34837007 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 1135 201 23 5 chr21 70728 70942 -34836628 + MLT1C LTR MaLR 250 467 0 788 271 120 49 chr21 71699 72065 -34835505 + MER57B LTR ERV1 39 430 -4 422 211 39 39 chr21 72191 72295 -34835275 + MER94 DNA DNA 2 105 -29 493 299 86 62 chr21 72343 72879 -34834691 + L1ME LINE L1 681 1229 -4890 245 305 19 0 chr21 73528 73633 -34833937 + L1ME LINE L1 3324 3430 -2699 584 306 66 12 chr21 73826 74068 -34833502 + L1ME LINE L1 4761 5015 -1114 2400 145 94 2 chr21 74292 74686 -34832884 - MSTB1 LTR MaLR -2 430 1 23 86 0 0 chr21 74757 74815 -34832755 + AT_rich Low_complexity Low_complexity 1 58 0 306 335 57 28 chr21 74831 75288 -34832282 + L1P2 LINE L1 5285 5754 -400 1542 222 77 58 chr21 75468 76154 -34831416 + L1MC4 LINE L1 6614 7364 -678 2141 128 3 0 chr21 76654 76951 -34830619 - AluSg SINE Alu -12 298 1 24 32 0 0 chr21 77124 77155 -34830415 + AT_rich Low_complexity Low_complexity 1 31 0 399 21 0 0 chr21 78672 78720 -34828850 + (TG)n Simple_repeat Simple_repeat 1 48 0 6249 22 10 0 chr21 81876 82563 -34825007 + L1PA3 LINE L1 5461 6154 -1 1045 128 6 6 chr21 82969 83133 -34824437 + L1MA6 LINE L1 6131 6294 -6 649 194 46 23 chr21 83137 83312 -34824258 + L1ME LINE L1 5247 5425 -917 40 73 0 0 chr21 83736 83818 -34823752 + GC_rich Low_complexity Low_complexity 1 82 0 206 143 0 71 chr21 83907 83963 -34823607 + (AGGGGG)n Simple_repeat Simple_repeat 6 57 0 1510 153 36 72 chr21 84854 84994 -34822576 + AluJb SINE Alu 3 146 -166 2249 79 7 7 chr21 84994 85286 -34822284 + AluY SINE Alu 1 292 -19 1510 153 36 72 chr21 85286 85452 -34822118 + AluJb SINE Alu 146 298 -14 346 308 6 39 chr21 85914 86070 -34821500 - L2 LINE L2 -4 3309 3159 333 299 104 0 chr21 86092 86226 -34821344 + L1ME LINE L1 5625 5772 -381 2221 98 0 7 chr21 86256 86552 -34821018 + AluSg SINE Alu 1 294 -16 2198 75 43 0 chr21 86568 86846 -34820724 + AluSx SINE Alu 1 290 -22 1793 98 80 15 chr21 87268 87560 -34820010 - AluSx SINE Alu 0 309 1 2162 103 27 3 chr21 87568 87869 -34819701 - AluSq SINE Alu -5 308 1 742 306 52 20 chr21 88026 88435 -34819135 - L2 LINE L2 -158 3155 2729 183 80 0 0 chr21 88584 88609 -34818961 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1622 162 0 25 chr21 88615 88899 -34818671 + AluJo SINE Alu 1 277 -35 267 103 0 0 chr21 88900 88939 -34818631 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 426 20 0 0 chr21 88938 88989 -34818581 + (CATA)n Simple_repeat Simple_repeat 2 52 0 30 27 0 0 chr21 89114 89151 -34818419 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr21 89396 89417 -34818153 + AT_rich Low_complexity Low_complexity 1 21 0 889 188 11 54 chr21 89880 90066 -34817504 + MER7C DNA MER2_type 1 178 -424 802 135 95 0 chr21 90042 90168 -34817402 + MER7C DNA MER2_type 465 602 0 325 226 55 39 chr21 90327 90516 -34817054 + MIR SINE MIR 14 241 -21 21 0 0 0 chr21 90977 90998 -34816572 + AT_rich Low_complexity Low_complexity 1 21 0 220 288 152 25 chr21 92448 92566 -34815004 + L2 LINE L2 2720 2852 -462 212 286 107 43 chr21 92749 92889 -34814681 + L2 LINE L2 3159 3307 -6 2035 138 24 0 chr21 93201 93498 -34814072 + AluSq SINE Alu 1 304 -9 2423 78 7 0 chr21 93498 93805 -34813765 + AluY SINE Alu 1 309 -2 1012 149 12 48 chr21 94014 94182 -34813388 + FRAM SINE Alu 5 166 0 809 251 55 17 chr21 94568 94803 -34812767 + HAL1 LINE L1 590 833 -1674 994 121 140 29 chr21 94888 95095 -34812475 - MER30 DNA MER1_type 0 230 1 614 230 125 10 chr21 95122 95322 -34812248 + HAL1 LINE L1 903 1125 -1382 593 233 35 60 chr21 95389 95621 -34811949 + HAL1 LINE L1 1257 1482 -1025 682 234 58 31 chr21 95692 95918 -34811652 + HAL1 LINE L1 1595 1826 -681 2221 96 20 0 chr21 96211 96513 -34811057 + AluY SINE Alu 1 308 -3 207 0 0 0 chr21 96543 96566 -34811004 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 3250 181 44 16 chr21 96782 97213 -34810357 + L1MA9 LINE L1 4038 4498 -1648 2163 108 0 23 chr21 97213 97519 -34810051 + AluSx SINE Alu 1 299 -13 3250 181 44 16 chr21 97519 97794 -34809776 + L1MA9 LINE L1 4498 4764 -1382 4291 169 44 55 chr21 97799 98789 -34808781 + L1MA9 LINE L1 4830 5804 -508 786 213 35 30 chr21 98789 98991 -34808579 + MER6B DNA MER2_type 4 206 -4 4291 169 44 55 chr21 98991 99458 -34808112 + L1MA9 LINE L1 5804 6274 -38 2660 32 3 3 chr21 99627 99938 -34807632 + AluY SINE Alu 1 311 0 271 156 42 73 chr21 99952 100048 -34807522 + L1M4 LINE L1 5738 5830 -344 218 250 21 0 chr21 100078 100126 -34807444 + (CA)n Simple_repeat Simple_repeat 2 50 0 2182 102 7 0 chr21 102536 102830 -34804740 - AluSx SINE Alu -16 296 1 739 319 72 39 chr21 102842 103228 -34804342 + L2 LINE L2 2579 2977 -337 2127 130 0 0 chr21 103309 103602 -34803968 - AluSx SINE Alu -19 293 1 794 176 0 0 chr21 103801 103932 -34803638 + FLAM_A SINE Alu 1 131 -2 1512 193 0 4 chr21 104080 104360 -34803210 + AluJb SINE Alu 28 306 -6 2271 72 0 10 chr21 105300 105590 -34801980 + AluY SINE Alu 1 287 -24 24 0 0 0 chr21 105961 105985 -34801585 + AT_rich Low_complexity Low_complexity 1 24 0 2063 109 0 21 chr21 107842 108127 -34799443 + AluSc SINE Alu 5 283 -26 270 0 0 0 chr21 108131 108161 -34799409 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 180 289 19 0 chr21 109062 109114 -34798456 - L2 LINE L2 -7 3306 3254 419 259 111 22 chr21 109607 109877 -34797693 + HAL1 LINE L1 1337 1630 -877 273 232 88 24 chr21 110232 110357 -34797213 + HAL1 LINE L1 2073 2205 -302 2103 131 3 0 chr21 110557 110855 -34796715 - AluSx SINE Alu -13 299 1 256 253 80 0 chr21 111013 111088 -34796482 - Cheshire DNA MER1_type 0 2420 2340 349 280 48 24 chr21 111066 111191 -34796379 - Cheshire DNA MER1_type -2132 288 161 230 208 38 19 chr21 111177 111230 -34796340 - Cheshire DNA MER1_type -2363 57 4 308 367 51 8 chr21 111363 111600 -34795970 + L2 LINE L2 1805 2051 -1263 578 278 61 33 chr21 111733 111978 -34795592 + L1MEc LINE L1 56 307 -6089 447 231 89 30 chr21 112321 112490 -34795080 + Charlie1 DNA MER1_type 47 225 -2536 491 189 31 16 chr21 112492 112619 -34794951 + Charlie1 DNA MER1_type 2627 2755 -6 530 157 41 116 chr21 115045 115128 -34792442 + Charlie5 DNA MER1_type 2427 2492 -93 1620 119 8 8 chr21 115128 115364 -34792206 - AluSq SINE Alu -22 291 56 530 157 41 116 chr21 115364 115452 -34792118 + Charlie5 DNA MER1_type 2492 2585 0 2096 148 0 0 chr21 115799 116103 -34791467 + AluSx SINE Alu 1 304 -8 2257 95 0 25 chr21 116180 116497 -34791073 - AluY SINE Alu -2 309 1 324 145 66 26 chr21 116812 116888 -34790682 - MER116 DNA Mariner -1 79 1 21 0 0 0 chr21 117522 117543 -34790027 + AT_rich Low_complexity Low_complexity 1 21 0 1638 229 50 43 chr21 117755 118167 -34789403 + L1M4 LINE L1 3076 3484 -2662 1629 122 45 4 chr21 118167 118412 -34789158 + AluSx SINE Alu 1 255 -57 2161 121 3 19 chr21 118412 118726 -34788844 + AluSq SINE Alu 3 311 -2 1638 229 50 43 chr21 118726 118936 -34788634 + L1M4 LINE L1 3483 3703 -2443 1560 171 77 14 chr21 118938 119225 -34788345 + AluJo SINE Alu 5 309 -3 485 246 43 23 chr21 119241 119486 -34788084 + L1ME1 LINE L1 5776 6036 -128 267 270 119 24 chr21 119478 119527 -34788043 + L1MA10 LINE L1 6194 6237 -97 225 0 0 0 chr21 119527 119552 -34788018 + (TA)n Simple_repeat Simple_repeat 2 26 0 267 270 119 24 chr21 119552 119628 -34787942 + L1MA10 LINE L1 6237 6331 -3 462 232 61 32 chr21 120650 120815 -34786755 - MIR SINE MIR 0 262 69 738 228 0 13 chr21 121017 121175 -34786395 - FRAM SINE Alu -20 156 1 2121 113 3 19 chr21 121801 122110 -34785460 - AluSx SINE Alu -8 304 1 180 357 31 10 chr21 124648 124746 -34782824 + L2 LINE L2 2051 2150 -1164 564 300 76 31 chr21 124909 125403 -34782167 + L2 LINE L2 2367 2918 -354 1881 142 30 3 chr21 125474 125769 -34781801 - AluSg SINE Alu -7 303 1 1883 151 10 10 chr21 127775 128087 -34779483 + AluSx SINE Alu 1 312 0 252 267 47 23 chr21 128525 128611 -34778959 - MER5B DNA MER1_type -89 89 2 714 153 0 29 chr21 128662 128799 -34778771 + FLAM_C SINE Alu 1 133 0 249 250 100 0 chr21 129576 129656 -34777914 + Charlie5 DNA MER1_type 2 89 -2523 653 169 151 0 chr21 129657 129823 -34777747 + Charlie5 DNA MER1_type 2395 2585 -27 26 50 0 0 chr21 131751 131791 -34775779 + AT_rich Low_complexity Low_complexity 1 40 0 1280 176 5 0 chr21 133586 133796 -34773774 - AluJo SINE Alu -14 298 88 1068 157 39 57 chr21 134303 134533 -34773037 + AluJo SINE Alu 86 311 -1 1775 271 49 19 chr21 134545 135234 -34772336 + L1MC4 LINE L1 5214 5403 -743 1413 243 90 61 chr21 135503 135690 -34771880 + L1MC4 LINE L1 6443 6623 -1419 1382 119 60 14 chr21 135690 135789 -34771781 + MER30 DNA MER1_type 2 95 -135 288 0 0 0 chr21 135789 135821 -34771749 + (CA)n Simple_repeat Simple_repeat 2 33 0 1382 119 60 14 chr21 135821 135939 -34771631 + MER30 DNA MER1_type 95 229 -1 1413 243 90 61 chr21 135939 136447 -34771123 + L1MC4 LINE L1 6623 7213 -829 2002 129 3 3 chr21 136447 136774 -34770796 - AluSx SINE Alu 0 327 1 1413 243 90 61 chr21 136774 136893 -34770677 + L1MC4 LINE L1 7213 7327 -715 268 299 77 8 chr21 136941 137058 -34770512 + L1MC4 LINE L1 7410 7534 -508 297 51 0 0 chr21 137371 137410 -34770160 + (CA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr21 138389 138421 -34769149 + AT_rich Low_complexity Low_complexity 1 32 0 892 230 88 45 chr21 140415 140767 -34766803 + L1ME1 LINE L1 5694 6060 -106 251 176 0 0 chr21 140771 140822 -34766748 + L1MA10 LINE L1 6284 6334 0 388 274 211 19 chr21 141406 141614 -34765956 + MIR SINE MIR 5 252 -10 1955 148 7 0 chr21 144091 144389 -34763181 - AluSx SINE Alu -12 300 1 689 201 69 6 chr21 144508 144667 -34762903 - MER58C DNA MER1_type -2 213 45 276 315 81 44 chr21 144782 145055 -34762515 + L2 LINE L2 1935 2217 -1097 580 89 0 0 chr21 145368 145447 -34762123 + MADE1 DNA Mariner 2 80 0 184 336 67 19 chr21 145687 145791 -34761779 + L2 LINE L2 2856 2964 -349 2096 119 3 0 chr21 145835 146129 -34761441 + AluSx SINE Alu 1 295 -17 186 318 63 16 chr21 146253 146316 -34761254 + L2 LINE L2 3155 3220 -52 283 273 0 0 chr21 146759 146825 -34760745 + Charlie5 DNA MER1_type 2364 2429 -183 580 303 55 13 chr21 148278 148561 -34759009 + L2 LINE L2 2723 3017 -296 2095 123 0 10 chr21 149258 149567 -34758003 + AluSg SINE Alu 1 306 -4 21 0 0 0 chr21 150513 150534 -34757036 + AT_rich Low_complexity Low_complexity 1 21 0 1484 101 0 0 chr21 153139 153327 -34754243 + AluY SINE Alu 7 194 -117 24 0 0 0 chr21 153368 153392 -34754178 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr21 154247 154283 -34753287 + AT_rich Low_complexity Low_complexity 1 36 0 1930 143 0 23 chr21 154345 154653 -34752917 + AluJb SINE Alu 1 301 -11 202 195 0 0 chr21 155366 155408 -34752162 - MIR SINE MIR -62 146 109 1338 180 81 8 chr21 155893 156154 -34751416 + MSTB LTR MaLR 1 280 -146 1222 94 6 0 chr21 156175 156335 -34751235 - AluSq SINE Alu -19 294 134 904 143 34 7 chr21 156335 156482 -34751088 + MSTB LTR MaLR 267 417 -9 234 128 0 0 chr21 156485 156524 -34751046 + (TA)n Simple_repeat Simple_repeat 2 40 0 1294 237 134 103 chr21 157778 158171 -34749399 + MLT1E2 LTR MaLR 1 395 -231 2209 98 3 31 chr21 158171 158489 -34749081 + AluSc SINE Alu 1 309 0 1294 237 134 103 chr21 158489 158727 -34748843 + MLT1E2 LTR MaLR 395 624 -2 304 254 97 97 chr21 159355 159393 -34748177 - MIR SINE MIR -35 227 190 2093 139 0 0 chr21 159393 159703 -34747867 + AluSx SINE Alu 2 311 -1 304 254 97 97 chr21 159703 159849 -34747721 - MIR SINE MIR -71 191 43 2211 123 0 10 chr21 159966 160274 -34747296 + AluSx SINE Alu 3 307 -5 656 240 47 63 chr21 162129 162383 -34745187 + L1ME1 LINE L1 4768 5017 -1129 1279 244 29 24 chr21 162579 163392 -34744178 + L1ME1 LINE L1 5265 6165 -1 1927 145 14 3 chr21 163613 163909 -34743661 + AluSx SINE Alu 3 301 -11 1212 273 54 33 chr21 163909 164484 -34743086 + L1MDa LINE L1 1316 1902 -4638 1241 251 12 27 chr21 164484 164886 -34742684 + L1MDa LINE L1 3 398 -6142 1771 277 57 57 chr21 164939 165658 -34741912 + L1MDa LINE L1 480 1197 -5346 2159 125 3 0 chr21 165658 165955 -34741615 + AluSx SINE Alu 1 298 -14 1771 277 57 57 chr21 165955 166152 -34741418 + L1MDa LINE L1 1197 1442 -5101 1906 144 4 0 chr21 166152 166429 -34741141 + AluSx SINE Alu 1 278 -34 1771 277 57 57 chr21 166429 166541 -34741029 + L1MDa LINE L1 1442 1552 -4991 1911 204 48 8 chr21 166573 167094 -34740476 + L1MDa LINE L1 1623 2164 -4376 2530 211 75 59 chr21 167094 167682 -34739888 + Charlie1 DNA MER1_type 1443 2021 -740 1783 130 79 0 chr21 167682 167959 -34739611 + AluSx SINE Alu 11 309 -3 2530 211 75 59 chr21 167959 168089 -34739481 + Charlie1 DNA MER1_type 2021 2148 -613 243 0 0 0 chr21 168089 168116 -34739454 + (TA)n Simple_repeat Simple_repeat 2 28 0 2075 127 0 0 chr21 168116 168407 -34739163 - AluSg1 SINE Alu -18 291 1 2530 211 75 59 chr21 168407 168545 -34739025 + Charlie1 DNA MER1_type 2147 2314 -447 25 65 0 0 chr21 168678 168724 -34738846 + AT_rich Low_complexity Low_complexity 1 46 0 6139 205 35 29 chr21 168826 170269 -34737301 - Cheshire DNA MER1_type -761 1659 208 11041 146 45 9 chr21 170269 170863 -34736707 + Tigger1 DNA MER2_type 439 1010 -1408 618 174 26 9 chr21 170863 170978 -34736592 + FLAM_C SINE Alu 1 117 -16 315 0 0 0 chr21 170983 171018 -34736552 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 11041 146 45 9 chr21 171018 171427 -34736143 + Tigger1 DNA MER2_type 1013 1406 -1012 2031 128 3 0 chr21 171427 171724 -34735846 + AluSx SINE Alu 1 298 -14 11041 146 45 9 chr21 171724 172624 -34734946 + Tigger1 DNA MER2_type 1406 2418 0 21 0 0 0 chr21 173120 173141 -34734429 + AT_rich Low_complexity Low_complexity 1 21 0 1848 117 11 8 chr21 173225 173491 -34734079 + AluSq SINE Alu 1 267 -46 2032 143 0 3 chr21 173571 173871 -34733699 + AluSx SINE Alu 1 299 -13 761 140 37 104 chr21 173881 174045 -34733525 + FRAM SINE Alu 1 152 -24 1504 204 0 36 chr21 174126 174263 -34733307 + AluJo SINE Alu 1 141 -171 1939 128 7 29 chr21 174263 174569 -34733001 + AluSx SINE Alu 1 299 -13 2156 128 0 0 chr21 174572 174878 -34732692 + AluSq SINE Alu 1 306 -7 1504 204 0 36 chr21 174878 175040 -34732530 + AluJo SINE Alu 143 293 -19 337 186 51 0 chr21 175452 175511 -34732059 - L2 LINE L2 0 3313 3252 1027 155 17 100 chr21 175554 175793 -34731777 + MER20 DNA MER1_type 1 219 0 533 313 58 28 chr21 176941 177267 -34730303 + L1ME LINE L1 5483 5818 -303 209 189 0 0 chr21 177418 177455 -34730115 + (TG)n Simple_repeat Simple_repeat 2 38 0 630 219 45 19 chr21 177930 178085 -34729485 + MIR SINE MIR 17 175 -87 216 167 0 0 chr21 178325 178373 -34729197 + (TG)n Simple_repeat Simple_repeat 2 49 0 406 261 108 27 chr21 178582 178804 -34728766 + L2 LINE L2 2818 3057 -215 537 80 0 0 chr21 178844 178919 -34728651 + (CCA)n Simple_repeat Simple_repeat 3 77 0 1790 200 45 56 chr21 179016 179587 -34727983 + L1MC5 LINE L1 6955 7519 -442 326 234 71 43 chr21 179640 179781 -34727789 + L1MC5 LINE L1 7616 7760 -201 2156 113 7 7 chr21 179782 180091 -34727479 + AluSx SINE Alu 1 309 -3 246 262 0 16 chr21 180091 180152 -34727418 + MIR SINE MIR 19 78 -184 240 172 31 78 chr21 180301 180365 -34727205 - MIR SINE MIR -56 152 92 717 189 141 44 chr21 180405 180611 -34726959 + MLT1J2 LTR MaLR 2 227 -223 232 296 0 28 chr21 180740 180811 -34726759 - MIR SINE MIR -106 156 88 36 0 0 0 chr21 181157 181193 -34726377 + AT_rich Low_complexity Low_complexity 1 36 0 2549 58 0 3 chr21 181435 181746 -34725824 - AluY SINE Alu -1 310 1 25 31 0 0 chr21 182074 182106 -34725464 + AT_rich Low_complexity Low_complexity 1 32 0 2410 88 0 0 chr21 182204 182511 -34725059 + AluSx SINE Alu 1 307 -5 1996 139 7 0 chr21 182682 182976 -34724594 - AluSp SINE Alu -17 296 1 1130 67 0 0 chr21 182976 183110 -34724460 - AluY SINE Alu -177 134 1 25 31 0 0 chr21 183121 183153 -34724417 + AT_rich Low_complexity Low_complexity 1 32 0 864 89 89 0 chr21 183172 183295 -34724275 + AluSc SINE Alu 160 293 -16 342 207 0 0 chr21 183301 183359 -34724211 + MLT1J2 LTR MaLR 331 388 -2 24 53 0 0 chr21 183380 183418 -34724152 + AT_rich Low_complexity Low_complexity 1 38 0 1511 164 63 0 chr21 183424 183662 -34723908 - AluJo SINE Alu -59 253 1 1587 170 22 50 chr21 183776 184134 -34723436 + L1PA16 LINE L1 5803 6150 -16 22 56 0 0 chr21 184253 184289 -34723281 + AT_rich Low_complexity Low_complexity 1 36 0 550 302 53 26 chr21 184463 184652 -34722918 - MIR SINE MIR -49 213 20 233 352 67 9 chr21 184673 184778 -34722792 - L2 LINE L2 -9 3263 3153 2237 90 7 0 chr21 184781 185071 -34722499 + AluSg1 SINE Alu 2 293 -16 2030 121 6 19 chr21 185134 185447 -34722123 - AluSx SINE Alu -3 309 1 1616 118 134 4 chr21 185447 185701 -34721869 - AluSg SINE Alu -20 290 4 317 190 17 0 chr21 185940 185998 -34721572 - Tigger7 DNA MER2_type -37 2450 2392 188 244 0 0 chr21 186431 186472 -34721098 - MIR SINE MIR -38 224 184 1134 184 0 10 chr21 186795 187050 -34720520 + AluJb SINE Alu 92 344 0 1954 87 77 25 chr21 187611 187897 -34719673 + AluSp SINE Alu 1 301 -12 1267 272 75 40 chr21 188068 188811 -34718759 + L2 LINE L2 2549 3313 0 322 247 31 10 chr21 188899 188996 -34718574 + MLT1L LTR MaLR 509 607 -8 1625 171 20 37 chr21 189181 189480 -34718090 - AluJb SINE Alu -18 294 1 2079 98 25 14 chr21 189481 189790 -34717780 - AluSx SINE Alu 0 312 1 2084 143 7 0 chr21 189824 190131 -34717439 + AluSx SINE Alu 1 309 -3 2033 127 4 0 chr21 190244 190520 -34717050 + AluSp SINE Alu 1 277 -36 394 261 39 46 chr21 191168 191475 -34716095 - HSREP522 Satellite telomeric -106 416 112 214 311 0 33 chr21 192683 192773 -34714797 + G-rich Low_complexity Low_complexity 4 90 0 316 197 0 14 chr21 193632 193703 -34713867 - L1 LINE L1 -3308 2838 2769 198 71 0 0 chr21 193711 193739 -34713831 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1801 138 32 3 chr21 193739 194015 -34713555 - AluSx SINE Alu -27 285 2 1464 208 14 23 chr21 194015 194479 -34713091 - L1 LINE L1 -2203 4646 4150 1629 234 16 0 chr21 194481 194852 -34712718 - MSTB LTR MaLR -49 377 1 3048 201 29 10 chr21 194852 195528 -34712042 - MST-int LTR MaLR 0 1735 1020 4152 241 30 19 chr21 195529 197098 -34710472 - L1PA15-16 LINE L1 -2695 4154 2553 2205 129 0 0 chr21 197098 197393 -34710177 + AluSx SINE Alu 1 295 -17 4152 241 30 19 chr21 197393 198000 -34709570 - L1PA15-16 LINE L1 -4296 2553 1954 406 326 61 64 chr21 198088 198431 -34709139 + L1ME LINE L1 5384 5725 -396 39 74 0 0 chr21 198506 198587 -34708983 + AT_rich Low_complexity Low_complexity 1 81 0 1459 186 29 22 chr21 198743 199018 -34708552 - AluJo SINE Alu -23 289 13 21 0 0 0 chr21 199161 199182 -34708388 + AT_rich Low_complexity Low_complexity 1 21 0 2123 131 13 0 chr21 199184 199308 -34708262 + AluSq SINE Alu 3 124 -189 351 0 0 0 chr21 199308 199347 -34708223 + (CA)n Simple_repeat Simple_repeat 2 40 0 2123 131 13 0 chr21 199347 199528 -34708042 + AluSq SINE Alu 124 312 -1 1350 74 0 0 chr21 200129 200292 -34707278 - AluSg SINE Alu -147 163 1 2341 61 31 10 chr21 200310 200657 -34706913 - AluY SINE Alu 0 311 1 1547 141 0 50 chr21 200657 200899 -34706671 + AluJb SINE Alu 67 296 -16 658 111 0 9 chr21 200908 201016 -34706554 + L1M4 LINE L1 5346 5452 -732 1673 156 17 44 chr21 201017 201151 -34706419 + AluJb SINE Alu 5 141 -171 2072 134 0 0 chr21 201151 201428 -34706142 + AluSg SINE Alu 1 277 -33 440 35 17 0 chr21 201433 201491 -34706079 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 1673 156 17 44 chr21 201491 201645 -34705925 + AluJb SINE Alu 145 291 -21 1936 114 41 28 chr21 201654 201944 -34705626 + AluSg SINE Alu 1 294 -16 1045 91 8 0 chr21 202404 202536 -34705034 + AluSq/x SINE Alu 4 136 -177 1663 106 0 0 chr21 202536 202753 -34704817 + AluY SINE Alu 1 217 -94 468 0 0 0 chr21 203657 203709 -34703861 + (GTTTG)n Simple_repeat Simple_repeat 1 52 0 2118 127 0 0 chr21 203709 203985 -34703585 - AluSx SINE Alu -31 281 6 1843 78 141 0 chr21 204703 204959 -34702611 - AluSq SINE Alu -11 292 1 209 356 67 0 chr21 204966 205070 -34702500 - MIR SINE MIR -116 146 36 1974 149 0 19 chr21 205127 205443 -34702127 + AluSx SINE Alu 1 310 -2 2264 115 0 3 chr21 205896 206201 -34701369 + AluSq SINE Alu 1 304 -9 1891 170 0 13 chr21 206525 206837 -34700733 + AluJb SINE Alu 3 310 -2 2022 112 72 0 chr21 206937 207213 -34700357 + AluSx SINE Alu 1 296 -16 2007 127 3 10 chr21 208329 208621 -34698949 - AluSg SINE Alu -20 290 1 331 174 26 39 chr21 208857 209012 -34698558 + (CAGAGA)n Simple_repeat Simple_repeat 2 154 0 532 126 22 55 chr21 209023 209206 -34698364 + (CAGAGA)n Simple_repeat Simple_repeat 2 178 0 504 158 30 36 chr21 209221 209566 -34698004 + (CAGAGA)n Simple_repeat Simple_repeat 1 342 0 2488 68 0 3 chr21 209624 209932 -34697638 + AluY SINE Alu 1 307 -4 456 105 13 20 chr21 210589 210741 -34696829 + (TAGA)n Simple_repeat Simple_repeat 1 151 0 668 105 22 33 chr21 210764 210945 -34696625 + (TAGA)n Simple_repeat Simple_repeat 1 179 0 413 87 48 19 chr21 210978 211082 -34696488 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 701 310 60 23 chr21 211125 211477 -34696093 - MLT1J LTR MaLR -45 466 102 1905 179 0 3 chr21 212250 212609 -34694961 + AluJb SINE Alu 1 358 0 221 243 40 101 chr21 212830 212978 -34694592 + L2 LINE L2 2080 2218 -1096 368 337 84 38 chr21 213127 213388 -34694182 + L2 LINE L2 2435 2707 -607 227 139 0 0 chr21 213445 213481 -34694089 + MLT1A2 LTR MaLR 24 59 -331 1410 185 108 15 chr21 213485 213644 -34693926 + MLT1A2 LTR MaLR 21 164 -210 231 36 0 0 chr21 213644 213672 -34693898 + (TC)n Simple_repeat Simple_repeat 2 29 0 1410 185 108 15 chr21 213672 213836 -34693734 + MLT1A2 LTR MaLR 164 374 0 1814 215 18 56 chr21 214179 214677 -34692893 - MLT1D LTR MaLR -6 499 21 282 149 43 0 chr21 214707 214754 -34692816 - MLT1D LTR MaLR -455 50 2 319 85 43 0 chr21 214853 214900 -34692670 - MLT1J LTR MaLR -455 50 2 294 125 42 0 chr21 214902 214950 -34692620 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 214951 214999 -34692571 - MLT1D LTR MaLR -455 50 1 334 64 43 0 chr21 215000 215047 -34692523 - MLT1D LTR MaLR -455 50 2 310 104 42 0 chr21 215049 215097 -34692473 - MLT1D LTR MaLR -455 50 1 331 83 42 0 chr21 215098 215146 -34692424 - MLT1D LTR MaLR -455 50 1 310 104 42 0 chr21 215147 215195 -34692375 - MLT1D LTR MaLR -455 50 1 338 83 42 0 chr21 215196 215244 -34692326 - MLT1D LTR MaLR -455 50 1 291 111 44 0 chr21 215245 215290 -34692280 - MLT1D LTR MaLR -456 49 3 318 104 42 0 chr21 215293 215341 -34692229 - MLT1D LTR MaLR -455 50 1 307 125 42 0 chr21 215342 215390 -34692180 - MLT1D LTR MaLR -455 50 1 348 64 43 0 chr21 215439 215486 -34692084 - MLT1D LTR MaLR -456 49 1 292 128 43 0 chr21 215487 215534 -34692036 - MLT1D LTR MaLR -456 49 1 251 191 0 21 chr21 215536 215583 -34691987 - MLT1E2 LTR MaLR -580 46 1 335 83 42 0 chr21 215636 215684 -34691886 - MLT1D LTR MaLR -455 50 1 329 104 42 0 chr21 215685 215733 -34691837 - MLT1D LTR MaLR -455 50 1 239 137 39 59 chr21 215734 215785 -34691785 - MLT1D LTR MaLR -455 50 1 325 85 43 0 chr21 215786 215833 -34691737 - MLT1D LTR MaLR -455 50 2 561 55 0 0 chr21 216229 216302 -34691268 + L1PA3 LINE L1 6080 6152 -3 2059 130 7 0 chr21 216462 216763 -34690807 - AluSx SINE Alu -9 303 1 414 180 18 9 chr21 217131 217242 -34690328 + CT-rich Low_complexity Low_complexity 2 113 0 970 143 0 16 chr21 217223 217405 -34690165 + (TTCTCC)n Simple_repeat Simple_repeat 1 179 0 3506 69 0 0 chr21 217417 217865 -34689705 - L1PA8 LINE L1 -15 6157 5710 1255 74 0 0 chr21 218069 218217 -34689353 + AluSg SINE Alu 1 148 -162 352 73 55 0 chr21 218217 218272 -34689298 - L1PA7 LINE L1 -329 5825 5768 945 138 6 12 chr21 218272 218432 -34689138 + L1PA13 LINE L1 5993 6151 -12 191 32 65 0 chr21 218432 218463 -34689107 + T-rich Low_complexity Low_complexity 5 37 0 956 107 71 0 chr21 218476 218616 -34688954 + AluSg SINE Alu 157 306 -4 226 111 0 0 chr21 218839 218875 -34688695 - L1PA14 LINE L1 -204 5957 5922 2049 141 0 0 chr21 218890 219181 -34688389 - AluSx SINE Alu -21 291 1 2049 144 0 16 chr21 219206 219518 -34688052 - AluSx SINE Alu -5 307 1 838 160 53 0 chr21 219519 219669 -34687901 - L1PA14 LINE L1 -227 5934 5777 936 138 6 12 chr21 219678 219838 -34687732 + L1PA13 LINE L1 5993 6151 -12 253 43 43 21 chr21 219841 219888 -34687682 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 502 163 0 43 chr21 219888 219966 -34687604 - AluSp/q SINE Alu -30 283 206 2373 91 0 0 chr21 221802 222098 -34685472 - AluY SINE Alu -14 297 2 1832 125 0 42 chr21 222174 222486 -34685084 - AluY SINE Alu 0 307 8 622 147 147 0 chr21 222572 222694 -34684876 - AluSp/q SINE Alu 0 306 170 455 260 24 0 chr21 222695 222785 -34684785 - L1PA16 LINE L1 -46 6120 6025 195 42 0 0 chr21 222785 222809 -34684761 + (CCCTG)n Simple_repeat Simple_repeat 4 27 0 455 260 24 0 chr21 222809 222845 -34684725 - L1PA16 LINE L1 -141 6025 5991 1503 188 52 42 chr21 222864 223172 -34684398 - AluSx SINE Alu -1 311 1 1077 163 25 49 chr21 223222 223467 -34684103 - L1PA16 LINE L1 -136 6030 5792 215 137 0 20 chr21 223859 223910 -34683660 + (TG)n Simple_repeat Simple_repeat 2 51 0 2130 83 0 11 chr21 223913 224190 -34683380 - AluY SINE Alu -37 274 1 1856 86 0 0 chr21 224200 224434 -34683136 - AluSx SINE Alu -25 287 54 2165 116 10 0 chr21 224552 224883 -34682687 + AluSx SINE Alu 1 334 0 2274 98 0 0 chr21 224983 225278 -34682292 + AluSx SINE Alu 1 295 -17 2098 113 0 23 chr21 225280 225580 -34681990 + AluSg SINE Alu 1 293 -17 2245 109 0 19 chr21 225582 225895 -34681675 + AluY SINE Alu 1 307 -4 835 122 35 6 chr21 226251 226767 -34680803 + GA-rich Low_complexity Low_complexity 1 531 0 1247 182 0 9 chr21 227114 227328 -34680242 - AluJo SINE Alu -11 301 90 842 196 163 48 chr21 227367 227501 -34680069 - AluJo SINE Alu -30 282 114 2239 92 14 3 chr21 227501 227796 -34679774 + AluY SINE Alu 1 298 -13 842 196 163 48 chr21 227796 227870 -34679700 - AluJo SINE Alu -198 114 50 1970 142 4 0 chr21 228071 228352 -34679218 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr21 228354 228377 -34679193 + (CATA)n Simple_repeat Simple_repeat 2 24 0 2356 99 0 6 chr21 228835 229147 -34678423 - AluSx SINE Alu -2 310 1 456 178 25 12 chr21 229576 229739 -34677831 + (TAGA)n Simple_repeat Simple_repeat 3 167 0 201 132 0 53 chr21 229827 229865 -34677705 + (TCTA)n Simple_repeat Simple_repeat 4 39 0 551 106 70 0 chr21 229866 230169 -34677401 + (TAGA)n Simple_repeat Simple_repeat 1 324 0 611 298 6 6 chr21 230279 230460 -34677110 - MLT1A1 LTR MaLR 0 365 185 340 209 15 0 chr21 230600 230667 -34676903 - MLT1A2 LTR MaLR -98 276 209 2240 104 0 0 chr21 230866 231256 -34676314 - AluSg SINE Alu 0 390 1 234 288 0 0 chr21 231258 231324 -34676246 - MLT1A2 LTR MaLR -210 155 90 1701 200 0 3 chr21 231348 231653 -34675917 - AluJb SINE Alu -2 310 7 2088 119 3 26 chr21 231661 232001 -34675569 - AluSx SINE Alu 0 312 7 2215 114 3 0 chr21 232009 232344 -34675226 - AluSx SINE Alu 0 312 1 2398 70 3 10 chr21 232585 232883 -34674687 - AluY SINE Alu -10 301 6 2280 74 3 52 chr21 232887 233213 -34674357 - AluY SINE Alu -1 310 1 2124 104 7 45 chr21 233924 234233 -34673337 + AluSx SINE Alu 1 297 -15 219 192 69 46 chr21 234300 234430 -34673140 + (TAGA)n Simple_repeat Simple_repeat 1 133 0 284 193 37 0 chr21 234474 234583 -34672987 + (TAGA)n Simple_repeat Simple_repeat 2 114 0 456 169 41 9 chr21 234703 235028 -34672542 + (TAGA)n Simple_repeat Simple_repeat 1 335 0 508 144 50 12 chr21 235057 235460 -34672110 + (TAGA)n Simple_repeat Simple_repeat 1 418 0 571 150 40 22 chr21 235471 236464 -34671106 + (TAGA)n Simple_repeat Simple_repeat 1 1010 0 273 29 0 0 chr21 237753 237787 -34669783 + (TG)n Simple_repeat Simple_repeat 1 34 0 797 248 103 14 chr21 239596 239878 -34667692 + L2 LINE L2 2844 3150 -163 1679 197 0 3 chr21 240340 240639 -34666931 - AluJb SINE Alu -14 298 1 4770 170 42 21 chr21 241274 242154 -34665416 + L1MA2 LINE L1 3418 4278 -2026 2355 84 0 7 chr21 242154 242453 -34665117 - AluY SINE Alu -13 298 2 4770 170 42 21 chr21 242453 244081 -34663489 + L1MA2 LINE L1 4278 6099 -205 1198 149 15 0 chr21 244192 244393 -34663177 + L1MA2 LINE L1 6101 6304 0 3716 205 25 35 chr21 245518 246406 -34661164 + L1MA8 LINE L1 5412 6290 -1 25 51 0 0 chr21 246470 246509 -34661061 + AT_rich Low_complexity Low_complexity 1 39 0 2535 41 0 31 chr21 247491 247808 -34659762 + AluY SINE Alu 1 307 -4 25 31 0 0 chr21 248245 248277 -34659293 + AT_rich Low_complexity Low_complexity 1 32 0 225 0 0 0 chr21 249578 249603 -34657967 + (A)n Simple_repeat Simple_repeat 1 25 0 39577 76 7 10 chr21 249606 255769 -34651801 + L1PA4 LINE L1 2 6147 -8 3247 215 49 15 chr21 255790 255860 -34651710 - L1PA15-16 LINE L1 -3546 3303 3237 826 75 9 0 chr21 255860 255967 -34651603 - L1PA4 LINE L1 -2 6153 6046 3247 215 49 15 chr21 255967 256927 -34650643 - L1PA15-16 LINE L1 -3612 3237 2249 1930 144 3 0 chr21 256927 257218 -34650352 - AluSx SINE Alu -20 292 1 3247 215 49 15 chr21 257218 257232 -34650338 - L1PA15-16 LINE L1 -4600 2249 2237 242 310 66 46 chr21 258479 258782 -34648788 - L2 LINE L2 -382 2932 2624 211 234 45 147 chr21 259016 259256 -34648314 + L2 LINE L2 2816 3014 -258 1552 183 43 0 chr21 259256 259513 -34648057 + AluJb SINE Alu 1 268 -44 211 234 45 147 chr21 259513 259605 -34647965 + L2 LINE L2 3014 3114 -158 297 196 71 0 chr21 260462 260518 -34647052 + FRAM SINE Alu 75 134 -32 505 235 56 72 chr21 260760 261096 -34646474 - L2 LINE L2 -219 3053 2725 309 214 0 0 chr21 261129 261185 -34646385 - AluJ/monomer SINE Alu -3 299 244 460 214 76 0 chr21 261186 261331 -34646239 - L1M4 LINE L1 -3213 2933 2778 574 240 48 77 chr21 263175 263297 -34644273 - L1M2 LINE L1 -705 5607 5483 1971 101 44 20 chr21 263297 263593 -34643977 - AluSx SINE Alu -7 305 3 574 240 48 77 chr21 263593 263783 -34643787 - L1M2 LINE L1 -829 5483 5304 804 265 50 22 chr21 264202 264564 -34643006 - L1M2 LINE L1 -1157 4989 4618 1785 239 66 20 chr21 264585 265447 -34642123 - L1MA6 LINE L1 -31 6269 5281 40 59 0 0 chr21 265859 265927 -34641643 + AT_rich Low_complexity Low_complexity 1 68 0 690 245 18 26 chr21 266171 266444 -34641126 - L1MA6 LINE L1 -1253 4893 4623 2904 252 23 28 chr21 266452 267354 -34640216 - L1MA6 LINE L1 -9 6291 5394 1406 238 36 28 chr21 267355 268095 -34639475 - L1P4 LINE L1 -565 5601 4855 2418 77 0 0 chr21 268423 268720 -34638850 + AluY SINE Alu 1 297 -14 6085 159 56 35 chr21 269952 270132 -34637438 - Tigger3b DNA MER2_type -1817 1211 1036 2062 137 26 65 chr21 270132 270355 -34637215 + MER1B DNA MER1_type 1 206 -2504 2147 97 35 0 chr21 270355 270645 -34636925 + AluSc SINE Alu 1 300 -9 2062 137 26 65 chr21 270645 270772 -34636798 + MER1B DNA MER1_type 206 337 0 6085 159 56 35 chr21 270772 270832 -34636738 - Tigger3b DNA MER2_type -1992 1036 979 1952 114 7 0 chr21 270832 271104 -34636466 + AluSp SINE Alu 33 306 -7 6085 159 56 35 chr21 271104 271775 -34635795 - Tigger3b DNA MER2_type -2049 979 266 2172 178 66 15 chr21 271775 272186 -34635384 - Tigger2a DNA MER2_type -2 432 1 6085 159 56 35 chr21 272186 272456 -34635114 - Tigger3b DNA MER2_type -2762 266 3 2107 106 0 30 chr21 272599 272900 -34634670 - AluY SINE Alu -19 292 1 1367 317 51 10 chr21 273144 273633 -34633937 + ERVL LTR ERVL 4292 4800 -964 1930 156 3 0 chr21 275480 275775 -34631795 - AluSx SINE Alu -14 298 3 682 252 137 25 chr21 276068 276389 -34631181 + L1ME LINE L1 5392 5748 -414 1720 212 121 22 chr21 276389 276894 -34630676 + L1MCa LINE L1 20 574 -5852 1013 155 95 0 chr21 276897 277150 -34630420 + L1MCa LINE L1 1515 1910 -4516 1090 171 88 0 chr21 277243 277459 -34630111 + Charlie1 DNA MER1_type 578 812 -1949 1983 144 3 0 chr21 277459 277765 -34629805 + AluSg SINE Alu 1 307 -3 5530 125 38 21 chr21 277769 278964 -34628606 + L1PA16 LINE L1 4951 6166 0 4631 53 0 0 chr21 279041 279608 -34627962 + HSATI Satellite Satellite 1 567 -10 1623 151 0 51 chr21 279608 279900 -34627670 + AluY SINE Alu 13 289 -22 266 99 59 46 chr21 279901 280053 -34627517 + (TA)n Simple_repeat Simple_repeat 1 154 0 447 53 80 42 chr21 280073 280340 -34627230 + (TA)n Simple_repeat Simple_repeat 1 277 0 430 144 29 23 chr21 280341 280515 -34627055 + (TTATA)n Simple_repeat Simple_repeat 5 179 0 485 82 61 30 chr21 280494 280791 -34626779 + (TA)n Simple_repeat Simple_repeat 1 306 0 208 99 70 0 chr21 280818 280889 -34626681 + (TA)n Simple_repeat Simple_repeat 2 77 0 1906 53 0 0 chr21 280889 281116 -34626454 + HSATI Satellite Satellite 1 227 -350 2447 152 5 1 chr21 1281122 1312440 -33595130 - ALR/alpha Satellite centromeric 0 33985 58 14243 34 0 0 chr21 1312440 1314925 -33592645 - L1PA2 LINE L1 -1 6154 3670 2447 152 5 1 chr21 1314925 1314984 -33592586 - ALR/alpha Satellite centromeric -33927 58 1 1217 121 11 0 chr21 1315089 1315271 -33592299 + AluSg/x SINE Alu 127 310 0 215 233 0 0 chr21 1315330 1315373 -33592197 + MIR SINE MIR 199 241 -21 1827 133 7 31 chr21 1315378 1315702 -33591868 - AluSc SINE Alu 0 317 1 1836 130 14 3 chr21 1315854 1316146 -33591424 + AluSq SINE Alu 1 295 -18 2252 79 0 0 chr21 1316148 1316504 -33591066 + AluY SINE Alu 3 358 0 23 0 0 0 chr21 1316824 1316847 -33590723 + AT_rich Low_complexity Low_complexity 1 23 0 29 60 0 0 chr21 1317450 1317500 -33590070 + AT_rich Low_complexity Low_complexity 1 50 0 1935 127 0 65 chr21 1317952 1318275 -33589295 - AluSg SINE Alu -8 302 1 1349 169 115 0 chr21 1318322 1318583 -33588987 - AluSq SINE Alu -12 291 1 2177 122 0 3 chr21 1318605 1318916 -33588654 - AluY SINE Alu 0 311 2 1878 168 7 0 chr21 1318956 1319259 -33588311 - AluSx SINE Alu -7 305 1 273 29 0 0 chr21 1320634 1320673 -33586897 + (TG)n Simple_repeat Simple_repeat 1 73 0 273 29 0 0 chr21 1320673 1320707 -33586863 + (TG)n Simple_repeat Simple_repeat 2 35 0 251 170 38 19 chr21 1321278 1321331 -33586239 - MLT1F1 LTR MaLR -83 484 431 930 342 32 32 chr21 1321415 1321980 -33585590 - HERVL LTR ERVL -1391 4263 3699 314 370 70 17 chr21 1322006 1322306 -33585264 - HERVL LTR ERVL -2092 3672 3357 415 219 45 77 chr21 1322688 1322735 -33584835 + L1ME1 LINE L1 5241 5288 -858 2084 102 0 14 chr21 1322735 1323020 -33584550 + AluY SINE Alu 20 300 -11 415 219 45 77 chr21 1323020 1323127 -33584443 + L1ME1 LINE L1 5288 5390 -756 990 268 137 7 chr21 1323129 1323677 -33583893 + L1ME1 LINE L1 5396 6017 -149 236 241 9 93 chr21 1324620 1324728 -33582842 - MIR SINE MIR -44 218 120 2273 97 0 0 chr21 1326011 1326310 -33581260 - AluY SINE Alu -8 303 5 2051 107 45 0 chr21 1326702 1326992 -33580578 + AluSq SINE Alu 1 303 -10 998 81 0 0 chr21 1327148 1327271 -33580299 + AluY SINE Alu 12 134 -177 1516 183 51 3 chr21 1327271 1327566 -33580004 + AluSx SINE Alu 1 309 -3 1970 159 0 0 chr21 1328577 1328879 -33578691 - AluSx SINE Alu 0 312 11 2118 121 3 3 chr21 1329630 1329928 -33577642 + AluSg SINE Alu 1 298 -12 1153 138 6 0 chr21 1330496 1330663 -33576907 + AluSg/x SINE Alu 127 294 -16 512 230 14 0 chr21 1330936 1331075 -33576495 + (CATATA)n Simple_repeat Simple_repeat 4 144 0 2112 130 17 3 chr21 1331314 1331613 -33575957 + AluSg SINE Alu 1 303 -7 28 111 0 0 chr21 1331744 1331870 -33575700 + AT_rich Low_complexity Low_complexity 1 126 0 2168 114 7 0 chr21 1332250 1332549 -33575021 - AluY SINE Alu -10 301 1 2177 121 6 10 chr21 1332614 1332928 -33574642 - AluSp SINE Alu 0 313 1 1820 157 44 0 chr21 1333273 1333566 -33574004 - AluSx SINE Alu -6 306 1 2193 115 0 13 chr21 1333588 1333893 -33573677 - AluY SINE Alu -8 303 3 670 276 89 22 chr21 1334016 1334241 -33573329 + MIR SINE MIR 3 242 -20 5746 154 61 24 chr21 1334271 1335176 -33572394 - Tigger3b DNA MER2_type -1797 1231 361 2044 143 0 3 chr21 1335176 1335483 -33572087 + AluSx SINE Alu 1 306 -6 2598 36 3 0 chr21 1335490 1335791 -33571779 + AluY SINE Alu 1 302 -9 5746 154 61 24 chr21 1335791 1336064 -33571506 - Tigger3b DNA MER2_type -2672 356 1 22 0 0 0 chr21 1336679 1336701 -33570869 + AT_rich Low_complexity Low_complexity 1 22 0 245 27 54 0 chr21 1337161 1337198 -33570372 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 2050 136 0 3 chr21 1337624 1337919 -33569651 + AluSc SINE Alu 3 296 -13 876 181 13 7 chr21 1338276 1338431 -33569139 - AluSg/x SINE Alu -21 289 134 2083 152 0 9 chr21 1338434 1338612 -33568958 - AluSx SINE Alu 0 312 137 1660 116 0 0 chr21 1338612 1338827 -33568743 - AluSg SINE Alu -95 215 1 2083 152 0 9 chr21 1338827 1338963 -33568607 - AluSx SINE Alu -175 137 1 3494 206 30 75 chr21 1339032 1340047 -33567523 + LTR5 LTR ERVK 1 969 0 2039 116 20 13 chr21 1341667 1341969 -33565601 + AluY SINE Alu 1 304 -7 3610 199 39 39 chr21 1341980 1342261 -33565309 + L1MB4 LINE L1 4905 5184 -996 2065 121 36 0 chr21 1342261 1342542 -33565028 + AluSg SINE Alu 1 291 -19 3610 199 39 39 chr21 1342542 1343544 -33564026 + L1MB4 LINE L1 5184 6180 0 2461 59 7 0 chr21 1344079 1344382 -33563188 - AluY SINE Alu -6 305 1 1493 185 102 10 chr21 1344725 1345039 -33562531 + MER61A LTR ERV1 1 343 0 2265 105 3 0 chr21 1345574 1345878 -33561692 - AluSc SINE Alu 0 309 5 2129 176 91 36 chr21 1346356 1346883 -33560687 - L1MA9 LINE L1 -2 6310 5755 304 294 31 12 chr21 1346877 1347037 -33560533 + L1MC3 LINE L1 5241 5403 -743 563 226 78 23 chr21 1347059 1347316 -33560254 + L1MCa LINE L1 1713 1983 -4443 374 299 60 0 chr21 1347332 1347449 -33560121 + L1MCa LINE L1 2057 2180 -4246 304 248 75 99 chr21 1347477 1347638 -33559932 + L1MCa LINE L1 2167 2323 -4103 1490 182 68 0 chr21 1347638 1347957 -33559613 + AluSx SINE Alu 1 337 0 3160 249 65 18 chr21 1347980 1349344 -33558226 + L1MCa LINE L1 2936 4363 -2063 267 152 0 0 chr21 1349379 1349425 -33558145 + L1MC3 LINE L1 5548 5593 -751 1101 151 6 6 chr21 1349491 1349670 -33557900 - AluSc SINE Alu -12 297 119 666 140 0 0 chr21 1349727 1349834 -33557736 - AluSq/x SINE Alu -206 107 1 608 215 34 38 chr21 1349834 1350043 -33557527 + L1MC3 LINE L1 5626 5833 -1952 2362 215 31 61 chr21 1350058 1350152 -33557418 + L1MC3 LINE L1 6004 6099 -1686 2303 72 7 13 chr21 1350152 1350457 -33557113 - AluY SINE Alu -8 303 1 2362 215 31 61 chr21 1350457 1350681 -33556889 + L1MC3 LINE L1 6099 6328 -1457 2279 100 0 19 chr21 1350681 1350990 -33556580 + AluSq SINE Alu 9 311 -2 2362 215 31 61 chr21 1350990 1351413 -33556157 + L1MC3 LINE L1 6328 6724 -1061 292 133 67 17 chr21 1351685 1351745 -33555825 - AluJb SINE Alu -7 295 233 398 182 0 0 chr21 1351752 1351829 -33555741 + L1MC/D LINE L1 5463 5539 -794 1157 222 16 12 chr21 1351830 1352073 -33555497 - AluJb SINE Alu -68 244 1 2249 65 33 29 chr21 1354498 1354833 -33552737 + AluY SINE Alu 1 311 0 1983 135 10 0 chr21 1354834 1355130 -33552440 + AluSx SINE Alu 1 299 -13 21 0 0 0 chr21 1356308 1356329 -33551241 + AT_rich Low_complexity Low_complexity 1 21 0 270 252 21 42 chr21 1357142 1357285 -33550285 - MER104 DNA MER2_type -37 143 4 515 316 65 17 chr21 1357378 1357609 -33549961 - MIR SINE MIR -1 261 20 21 57 0 0 chr21 1358029 1358064 -33549506 + AT_rich Low_complexity Low_complexity 1 35 0 299 305 19 0 chr21 1358698 1358803 -33548767 + MER102b DNA MER1_type 234 340 -1 22 70 0 0 chr21 1358858 1358901 -33548669 + AT_rich Low_complexity Low_complexity 1 43 0 2201 126 3 7 chr21 1359311 1359621 -33547949 - AluSc SINE Alu 0 309 1 259 312 91 0 chr21 1360155 1360232 -33547338 - L2 LINE L2 -50 3222 3139 22 56 0 0 chr21 1360642 1360678 -33546892 + AT_rich Low_complexity Low_complexity 1 36 0 1043 185 6 6 chr21 1360975 1361153 -33546417 + AluSx SINE Alu 2 179 -133 484 257 0 0 chr21 1362890 1362995 -33544575 + U6 snRNA snRNA 1 105 -2 31 58 0 0 chr21 1363440 1363492 -33544078 + AT_rich Low_complexity Low_complexity 1 52 0 605 186 0 0 chr21 1363663 1363765 -33543805 - AluJ/FLAM SINE Alu -210 102 1 39 38 0 0 chr21 1364754 1364807 -33542763 + AT_rich Low_complexity Low_complexity 1 53 0 45 105 0 0 chr21 1364928 1365099 -33542471 + AT_rich Low_complexity Low_complexity 1 171 0 364 141 0 0 chr21 1365100 1365166 -33542404 - FLAM SINE Alu -8 125 68 1421 192 44 64 chr21 1365218 1365665 -33541905 - Tigger2 DNA MER2_type 0 2718 1 229 200 11 56 chr21 1366433 1366523 -33541047 + (TTA)n Simple_repeat Simple_repeat 2 87 0 1973 132 7 19 chr21 1366668 1366978 -33540592 + AluSx SINE Alu 3 308 -4 2294 179 72 12 chr21 1367269 1367783 -33539787 + LTR10A LTR ERV1 3 547 -62 18922 189 28 27 chr21 1367821 1369713 -33537857 + HERVI LTR ERV1 26 1916 -5869 2277 98 0 3 chr21 1369713 1370008 -33537562 - AluY SINE Alu -17 294 1 18922 189 28 27 chr21 1370008 1373365 -33534205 + HERVI LTR ERV1 1916 5210 -2575 7171 237 14 35 chr21 1373363 1375292 -33532278 + LTR10A-int LTR ERV1 4758 6647 -2 2283 159 72 13 chr21 1375366 1375837 -33531733 + LTR10A LTR ERV1 1 499 -110 820 270 44 0 chr21 1376950 1377154 -33530416 - MER58A DNA MER1_type 0 224 12 26 50 0 0 chr21 1377366 1377406 -33530164 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr21 1377474 1377497 -33530073 + AT_rich Low_complexity Low_complexity 1 23 0 297 346 78 35 chr21 1377769 1378026 -33529544 - L2 LINE L2 -1015 2299 2032 1341 232 55 29 chr21 1378298 1378864 -33528706 - L1MEc LINE L1 -3558 2657 2122 557 249 51 61 chr21 1378913 1379110 -33528460 - L1MEc LINE L1 -4258 2138 1944 1280 350 44 39 chr21 1379476 1380068 -33527502 - L1MEc LINE L1 -5762 634 40 2298 75 7 16 chr21 1380560 1380867 -33526703 + AluY SINE Alu 1 304 -7 454 314 88 0 chr21 1381160 1381364 -33526206 - L1ME4a LINE L1 -283 5838 5617 31 0 0 0 chr21 1381518 1381549 -33526021 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr21 1381686 1381708 -33525862 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr21 1381839 1381878 -33525692 + AT_rich Low_complexity Low_complexity 1 39 0 1778 223 48 9 chr21 1382434 1382651 -33524919 - L1M4 LINE L1 -464 5720 5513 2055 66 0 4 chr21 1382651 1382910 -33524660 - AluY SINE Alu -53 258 1 1778 223 48 9 chr21 1382910 1383364 -33524206 - L1M4 LINE L1 -671 5513 5023 1382 186 8 11 chr21 1383366 1383629 -33523941 + L1PB4 LINE L1 5883 6144 -12 812 177 83 26 chr21 1383681 1383873 -33523697 - L1MB4 LINE L1 -2 6178 5976 353 276 37 22 chr21 1384040 1384174 -33523396 + L2 LINE L2 2661 2796 -518 336 347 60 7 chr21 1384305 1384455 -33523115 + L2 LINE L2 2967 3124 -189 874 185 25 0 chr21 1384477 1384634 -33522936 - AluJo SINE Alu -32 280 120 203 307 66 44 chr21 1384634 1384771 -33522799 + L2 LINE L2 3125 3264 -49 5842 129 25 11 chr21 1384915 1385414 -33522156 - L1P LINE L1 -2353 3793 3302 2175 121 0 0 chr21 1385414 1385711 -33521859 - AluSg SINE Alu -13 297 1 5842 129 25 11 chr21 1385711 1386184 -33521386 - L1P LINE L1 -2844 3302 2808 2773 91 0 0 chr21 1386202 1386574 -33520996 + L1PA8 LINE L1 5788 6159 -13 388 313 62 16 chr21 1386598 1386841 -33520729 + L1M4 LINE L1 4495 4748 -1398 1121 267 38 32 chr21 1386872 1387347 -33520223 + L1M4 LINE L1 4812 5289 -857 14959 47 2 1 chr21 1387384 1390022 -33517548 + L1PA5 LINE L1 3507 6145 -9 1984 104 32 26 chr21 1390812 1391121 -33516449 + AluY SINE Alu 1 311 0 1710 148 51 46 chr21 1391634 1392006 -33515564 + THE1C LTR MaLR 2 375 0 380 222 0 0 chr21 1392006 1392078 -33515492 + THE1C-int LTR MaLR 1 72 -1508 6522 145 10 8 chr21 1392071 1393215 -33514355 + THE1C-int LTR MaLR 216 1422 -158 1948 136 3 10 chr21 1394454 1394755 -33512815 + AluSq SINE Alu 1 299 -14 7741 98 4 1 chr21 1395319 1396387 -33511183 - MER11C LTR ERVK 0 1071 1 21 71 0 0 chr21 1396442 1396484 -33511086 + AT_rich Low_complexity Low_complexity 1 42 0 2000 138 0 0 chr21 1396586 1396877 -33510693 + AluSq SINE Alu 1 291 -22 2806 21 0 0 chr21 1397221 1397548 -33510022 - L1PA2 LINE L1 0 6155 5829 3522 30 0 5 chr21 1397548 1397977 -33509593 + L1P LINE L1 4778 5204 -942 21 0 0 0 chr21 1398092 1398113 -33509457 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 1398253 1398281 -33509289 + AT_rich Low_complexity Low_complexity 1 28 0 2337 82 0 3 chr21 1398485 1398791 -33508779 - AluY SINE Alu -6 305 1 1200 126 6 0 chr21 1400114 1400288 -33507282 + AluSx SINE Alu 1 175 -137 24 67 0 0 chr21 1400608 1400653 -33506917 + AT_rich Low_complexity Low_complexity 1 45 0 1026 152 162 0 chr21 1401282 1401480 -33506090 + MER30 DNA MER1_type 1 230 0 3650 203 39 17 chr21 1401689 1402507 -33505063 - L1PA16 LINE L1 -14 6152 5317 5229 273 48 16 chr21 1402510 1402966 -33504604 - L1 LINE L1 -864 5282 4842 198 0 0 0 chr21 1402966 1402988 -33504582 + (TG)n Simple_repeat Simple_repeat 2 23 0 5229 273 48 16 chr21 1402988 1404443 -33503127 - L1 LINE L1 -1304 4842 3310 4118 231 81 31 chr21 1404454 1404649 -33502921 + L1MA8 LINE L1 3897 4081 -2219 2085 116 3 0 chr21 1404649 1404943 -33502627 - AluY SINE Alu -16 295 1 4118 231 81 31 chr21 1404943 1406685 -33500885 + L1MA8 LINE L1 4081 5941 -359 565 213 173 4 chr21 1406696 1406921 -33500649 + L1MA8 LINE L1 6025 6287 -4 2054 136 0 0 chr21 1407664 1407951 -33499619 - AluSc SINE Alu -16 293 7 1928 156 0 7 chr21 1408644 1408951 -33498619 + AluSg SINE Alu 5 309 -1 849 162 37 11 chr21 1409585 1409776 -33497794 + L1MA3 LINE L1 6110 6305 0 632 312 65 12 chr21 1414595 1414623 -33492947 + L1MB5 LINE L1 1288 1313 -5071 1251 232 21 7 chr21 1414623 1414907 -33492663 + AluJb SINE Alu 1 288 -24 632 312 65 12 chr21 1414907 1415308 -33492262 + L1MB5 LINE L1 1313 1740 -4644 326 300 63 9 chr21 1415449 1415766 -33491804 + L1MB5 LINE L1 1966 2299 -4085 437 293 40 50 chr21 1415834 1416056 -33491514 + L1MB5 LINE L1 2390 2609 -3773 21 36 0 0 chr21 1416263 1416291 -33491279 + AT_rich Low_complexity Low_complexity 1 28 0 2126 112 10 0 chr21 1416345 1416650 -33490920 + AluY SINE Alu 1 308 -3 1788 146 33 0 chr21 1416675 1416949 -33490621 + AluSx SINE Alu 12 294 -18 448 282 40 44 chr21 1416987 1417239 -33490331 + L1MB5 LINE L1 2887 3137 -3245 737 264 52 18 chr21 1417242 1417571 -33489999 + L1MB5 LINE L1 4747 5086 -1296 2131 108 0 7 chr21 1417597 1417893 -33489677 - AluY SINE Alu -17 294 1 679 348 56 22 chr21 1417903 1418037 -33489533 + L1MB5 LINE L1 5930 6058 -352 1835 143 17 10 chr21 1418037 1418330 -33489240 + AluSp SINE Alu 1 295 -18 679 348 56 22 chr21 1418330 1418606 -33488964 + L1MB5 LINE L1 6058 6354 -56 2232 78 0 3 chr21 1419039 1419366 -33488204 + AluY SINE Alu 1 326 0 270 254 9 45 chr21 1419575 1419685 -33487885 + L1MB2 LINE L1 2887 2992 -4573 511 259 0 9 chr21 1419686 1419802 -33487768 + FLAM_C SINE Alu 1 115 -28 2008 124 0 10 chr21 1420060 1420378 -33487192 + AluSg1 SINE Alu 3 309 0 509 271 66 35 chr21 1420386 1420752 -33486818 + L1MB2 LINE L1 3269 3645 -3922 478 185 0 0 chr21 1420836 1420917 -33486653 + AluJ/FLAM SINE Alu 4 84 -228 652 278 54 11 chr21 1420917 1421266 -33486304 + L1MB2 LINE L1 3657 4020 -3545 1931 218 36 2 chr21 1421290 1421702 -33485868 - MSTB LTR MaLR 0 426 1 1327 206 33 11 chr21 1421832 1422108 -33485462 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr21 1422119 1422141 -33485429 + AT_rich Low_complexity Low_complexity 1 22 0 962 285 83 19 chr21 1422379 1423229 -33484341 + L1MB2 LINE L1 6086 6988 -599 22 0 0 0 chr21 1423243 1423265 -33484305 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr21 1423311 1423351 -33484219 + AT_rich Low_complexity Low_complexity 1 40 0 384 183 53 12 chr21 1423370 1423721 -33483849 + (TA)n Simple_repeat Simple_repeat 1 365 0 1681 196 50 34 chr21 1423726 1424109 -33483461 + L1MB2 LINE L1 7127 7519 -71 1226 243 7 10 chr21 1424109 1424397 -33483173 - AluJo SINE Alu -24 288 2 1681 196 50 34 chr21 1424397 1424452 -33483118 + L1MB2 LINE L1 7519 7572 -18 1868 103 4 8 chr21 1424670 1424932 -33482638 + AluSq SINE Alu 1 261 -52 451 288 31 18 chr21 1425273 1425436 -33482134 + L1MA9 LINE L1 701 865 -5090 3851 232 52 17 chr21 1425441 1427559 -33480011 + L1MA9 LINE L1 3981 6175 -25 22 35 0 0 chr21 1427634 1427663 -33479907 + AT_rich Low_complexity Low_complexity 1 29 0 203 413 0 0 chr21 1428116 1428191 -33479379 - L2 LINE L2 -498 2816 2742 327 341 30 1 chr21 1429437 1429598 -33477972 - MER5A DNA MER1_type -1 188 2 429 216 92 60 chr21 1429744 1429962 -33477608 + L1MC4 LINE L1 7281 7505 -537 2247 98 0 29 chr21 1430294 1430609 -33476961 - AluSx SINE Alu -6 306 1 235 331 162 7 chr21 1431463 1431611 -33475959 - MER5A DNA MER1_type 0 189 19 252 216 18 108 chr21 1431828 1431939 -33475631 - MIR SINE MIR -9 253 153 1996 127 3 3 chr21 1432023 1432306 -33475264 - AluSp SINE Alu -30 283 1 2219 174 16 5 chr21 1434030 1434462 -33473108 - LTR56 LTR ERV1 0 445 9 1370 180 26 16 chr21 1434952 1435380 -33472190 - MER67C LTR ERV1 -1 709 218 2051 119 10 0 chr21 1436286 1436581 -33470989 + AluSx SINE Alu 1 298 -14 2153 124 3 10 chr21 1436618 1436925 -33470645 - AluSp SINE Alu -8 305 1 22 0 0 0 chr21 1437263 1437285 -33470285 + AT_rich Low_complexity Low_complexity 1 22 0 1215 49 0 19 chr21 1437285 1437447 -33470123 - L1PA4 LINE L1 -1 6154 5996 695 131 5 0 chr21 1437452 1447063 -33460507 - CER Satellite Satellite 0 9650 1 40398 56 3 2 chr21 1447086 1453238 -33454332 + L1PA4 LINE L1 9 6164 0 566 306 107 38 chr21 1453321 1453713 -33453857 + L1MDa LINE L1 1514 1932 -4608 21 0 0 0 chr21 1453941 1453962 -33453608 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 1454078 1454102 -33453468 + AT_rich Low_complexity Low_complexity 1 24 0 361 233 39 23 chr21 1454356 1454485 -33453085 + L1MEc LINE L1 55 185 -6211 711 323 54 58 chr21 1454692 1455428 -33452142 + L1MEc LINE L1 442 1174 -5222 765 150 23 0 chr21 1455571 1455704 -33451866 - MSTB1 LTR MaLR -296 136 1 232 164 14 14 chr21 1456969 1457042 -33450528 + (TA)n Simple_repeat Simple_repeat 2 74 0 1391 181 87 56 chr21 1457076 1457458 -33450112 - LTR49 LTR ERV1 -168 427 30 2017 122 7 4 chr21 1457458 1457737 -33449833 + AluSq SINE Alu 14 293 -20 1391 181 87 56 chr21 1457737 1457768 -33449802 - LTR49 LTR ERV1 -565 30 1 21 57 0 0 chr21 1458161 1458196 -33449374 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr21 1458223 1458262 -33449308 + AT_rich Low_complexity Low_complexity 1 39 0 316 212 0 0 chr21 1458869 1458935 -33448635 + MER20 DNA MER1_type 151 216 -3 1775 163 58 21 chr21 1459075 1459504 -33448066 - LTR56 LTR ERV1 0 445 1 2212 187 91 11 chr21 1459688 1460238 -33447332 - LTR49 LTR ERV1 -1 594 1 31 58 0 0 chr21 1460804 1460856 -33446714 + AT_rich Low_complexity Low_complexity 1 52 0 317 263 26 20 chr21 1461013 1461165 -33446405 + (TA)n Simple_repeat Simple_repeat 1 153 0 26 0 0 0 chr21 1461280 1461306 -33446264 + AT_rich Low_complexity Low_complexity 1 26 0 13436 40 1 0 chr21 1461394 1463138 -33444432 - L1PA2 LINE L1 -1961 4185 2440 9971 31 0 2 chr21 1463138 1465105 -33442465 + L1PA2 LINE L1 4190 6155 0 22 35 0 0 chr21 1465105 1465134 -33442436 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr21 1465201 1465222 -33442348 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1236 253 46 10 chr21 1465938 1466353 -33441217 - MER54A LTR ERVL 0 901 472 2072 118 74 15 chr21 1466391 1466729 -33440841 - THE1B LTR MaLR 0 364 7 1499 214 51 2 chr21 1466738 1467131 -33440439 - MER54A LTR ERVL -489 412 1 1600 209 0 10 chr21 1468306 1468608 -33438962 - AluJo SINE Alu -3 309 11 1283 239 43 68 chr21 1469595 1469837 -33437733 - MLT1D LTR MaLR 0 505 258 2150 102 7 7 chr21 1469837 1470130 -33437440 - AluSc SINE Alu -16 293 1 1283 239 43 68 chr21 1470130 1470401 -33437169 - MLT1D LTR MaLR -247 258 5 472 213 22 0 chr21 1470496 1470632 -33436938 + GA-rich Low_complexity Low_complexity 2 140 0 1749 242 37 69 chr21 1470642 1471236 -33436334 + MER77 LTR ERV1 25 599 -6 648 321 3 3 chr21 1472372 1472687 -33434883 - L1MEc LINE L1 -3483 2732 2418 813 251 26 31 chr21 1472741 1473050 -33434520 - L1MEc LINE L1 -4038 2358 2050 3285 243 41 30 chr21 1473050 1473988 -33433582 + Tigger6a DNA MER2_type 2 955 -642 1731 192 3 7 chr21 1473988 1474295 -33433275 - AluJb SINE Alu -6 306 1 3285 243 41 30 chr21 1474295 1474426 -33433144 + Tigger6a DNA MER2_type 955 1083 0 813 251 26 31 chr21 1474426 1474503 -33433067 - L1MEc LINE L1 -4346 2050 1974 4963 170 8 22 chr21 1474551 1475727 -33431843 + L1PA16 LINE L1 5007 6165 -1 2321 114 0 0 chr21 1475907 1476214 -33431356 - AluSg SINE Alu -3 307 1 250 54 27 0 chr21 1476258 1476295 -33431275 - L1P LINE L1 -1219 4927 4890 3423 36 4 16 chr21 1476260 1476715 -33430855 + L1PA4 LINE L1 5699 6152 -3 227 229 118 79 chr21 1476720 1477025 -33430545 - L1MEc LINE L1 -4640 1756 1440 539 315 53 19 chr21 1477076 1477406 -33430164 - L1MEc LINE L1 -4516 1630 714 728 330 58 25 chr21 1477427 1477943 -33429627 - L1MEc LINE L1 -5714 682 150 1369 209 21 78 chr21 1479941 1480328 -33427242 - MLT1A1 LTR MaLR 0 365 1 1985 140 64 3 chr21 1480462 1480805 -33426765 + THE1B LTR MaLR 1 364 0 1850 138 32 11 chr21 1481039 1481322 -33426248 - AluSg SINE Alu -21 289 1 306 338 29 43 chr21 1481426 1481565 -33426005 + MER5A DNA MER1_type 52 188 -1 1117 72 0 0 chr21 1482357 1482496 -33425074 - AluY SINE Alu -17 294 156 243 0 0 0 chr21 1483629 1483656 -33423914 + (T)n Simple_repeat Simple_repeat 1 27 0 2449 69 0 10 chr21 1485334 1485637 -33421933 + AluY SINE Alu 1 300 -11 230 209 33 88 chr21 1486310 1486401 -33421169 + MIR SINE MIR 177 262 0 201 176 0 0 chr21 1487807 1487841 -33419729 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 2136 67 0 39 chr21 1487899 1488184 -33419386 - AluY SINE Alu 0 311 38 189 0 0 0 chr21 1488771 1488792 -33418778 + (TTGG)n Simple_repeat Simple_repeat 4 24 0 1103 243 72 65 chr21 1488823 1489271 -33418299 - MLT1C LTR MaLR -5 462 3 1993 201 8 2 chr21 1489679 1490077 -33417493 + L1PA16 LINE L1 5764 6163 -3 264 178 68 27 chr21 1490083 1490156 -33417414 + L1ME4a LINE L1 5968 6043 -78 201 147 0 0 chr21 1492371 1492405 -33415165 + (CA)n Simple_repeat Simple_repeat 1 34 0 4842 95 28 0 chr21 1492682 1493183 -33414387 - L1PA13 LINE L1 -7 6156 5627 2581 107 0 27 chr21 1493183 1493557 -33414013 + THE1B LTR MaLR 1 364 0 4842 95 28 0 chr21 1493557 1493778 -33413792 - L1PA13 LINE L1 -536 5627 5414 2535 188 13 15 chr21 1494158 1494845 -33412725 - L1M4 LINE L1 -405 6277 5592 689 233 28 40 chr21 1494864 1495117 -33412453 - L1M4 LINE L1 -2191 4453 4204 5091 188 15 20 chr21 1495122 1496696 -33410874 - L1PA16 LINE L1 -5 6864 5302 9766 118 17 29 chr21 1496690 1498156 -33409414 + THE1B-int LTR MaLR 133 1580 0 2562 100 5 24 chr21 1498156 1498527 -33409043 + THE1B LTR MaLR 1 364 0 6378 227 19 8 chr21 1498528 1500006 -33407564 - L1PA16 LINE L1 -5592 1257 5 596 217 17 1 chr21 1500051 1500188 -33407382 - L1M4 LINE L1 -2492 4152 4014 1817 277 46 38 chr21 1500231 1501749 -33405821 - L1M4c LINE L1 -3653 2991 1360 3803 256 45 40 chr21 1501771 1503045 -33404525 - L1M4c LINE L1 -5261 1281 2 303 319 34 8 chr21 1504084 1504203 -33403367 + L2 LINE L2 3192 3313 0 21 89 0 0 chr21 1504287 1504343 -33403227 + AT_rich Low_complexity Low_complexity 1 56 0 269 333 70 31 chr21 1504733 1504862 -33402708 - MLT1F LTR MaLR -107 435 302 320 252 119 63 chr21 1504834 1504977 -33402593 - MLT1G LTR MaLR -211 379 229 231 255 89 76 chr21 1505208 1505365 -33402205 + MIR SINE MIR 60 218 -44 809 287 14 5 chr21 1506225 1506448 -33401122 - L2 LINE L2 -1769 1545 1321 650 302 32 29 chr21 1506543 1506821 -33400749 + MLT1K LTR MaLR 300 578 -10 357 319 48 24 chr21 1507054 1507220 -33400350 - MIR SINE MIR -30 232 63 872 274 40 18 chr21 1507509 1507783 -33399787 - LTR16A LTR ERVL -154 296 17 2353 64 3 14 chr21 1507869 1508165 -33399405 - AluY SINE Alu -18 293 1 22 35 0 0 chr21 1508328 1508357 -33399213 + AT_rich Low_complexity Low_complexity 1 29 0 2564 183 55 6 chr21 1508973 1509465 -33398105 + MLT2B1 LTR ERVL 1 516 -4 225 0 0 0 chr21 1509625 1509650 -33397920 + (TCTA)n Simple_repeat Simple_repeat 4 28 0 3096 130 83 22 chr21 1510658 1511404 -33396166 - LTR12 LTR ERV1 0 1480 16 751 213 38 47 chr21 1511626 1511861 -33395709 - pTR5 LTR ERV1 -1463 975 743 2332 68 0 40 chr21 1511910 1512232 -33395338 + AluY SINE Alu 1 309 -2 27 49 0 0 chr21 1513508 1513549 -33394021 + AT_rich Low_complexity Low_complexity 1 41 0 225 152 22 0 chr21 1514559 1514605 -33392965 - HAL1 LINE L1 -134 2373 2327 2648 174 99 36 chr21 1515519 1516184 -33391386 + MER39 LTR ERV1 1 707 0 367 333 57 13 chr21 1516418 1516577 -33390993 - L2 LINE L2 -329 2984 2819 229 224 0 17 chr21 1516714 1516772 -33390798 + MER58B DNA MER1_type 1 57 -284 496 182 0 0 chr21 1516825 1516902 -33390668 + MER58B DNA MER1_type 264 340 -1 1471 201 14 10 chr21 1517261 1517554 -33390016 - AluJb SINE Alu -16 296 3 33 43 0 0 chr21 1518196 1518243 -33389327 + AT_rich Low_complexity Low_complexity 1 47 0 312 27 0 0 chr21 1520442 1520479 -33387091 + (TG)n Simple_repeat Simple_repeat 2 38 0 4059 190 33 21 chr21 1521102 1522671 -33384899 + L1MB1 LINE L1 4545 6123 -45 24 77 0 0 chr21 1522726 1522778 -33384792 + AT_rich Low_complexity Low_complexity 1 52 0 2509 65 0 3 chr21 1522805 1523115 -33384455 - AluY SINE Alu -2 309 1 2786 13 0 3 chr21 1523426 1523737 -33383833 - AluYa5 SINE Alu -1 310 1 27 49 0 0 chr21 1524562 1524603 -33382967 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr21 1525253 1525283 -33382287 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr21 1525400 1525438 -33382132 + AT_rich Low_complexity Low_complexity 1 38 0 2039 145 89 8 chr21 1525536 1525908 -33381662 - MSTA LTR MaLR 0 428 27 2469 156 20 0 chr21 1525933 1526330 -33381240 - MSTA-int LTR MaLR 0 1651 1247 594 202 17 6 chr21 1526406 1526579 -33380991 + CT-rich Low_complexity Low_complexity 3 177 0 311 0 26 0 chr21 1527144 1527183 -33380387 + (TA)n Simple_repeat Simple_repeat 1 40 0 4820 246 59 25 chr21 1527184 1529203 -33378367 - L1MEc LINE L1 -1355 4860 2769 2665 184 4 2 chr21 1529436 1529921 -33377649 - L1MA4 LINE L1 -195 6105 5620 658 221 7 13 chr21 1530062 1530216 -33377354 + L1M4 LINE L1 6 158 -6384 9714 196 39 27 chr21 1530251 1531025 -33376545 - L1MA4 LINE L1 -738 5567 4804 2076 101 18 4 chr21 1531025 1531326 -33376244 - AluSg SINE Alu 0 305 1 9714 196 39 27 chr21 1531326 1533212 -33374358 - L1MA4 LINE L1 -1501 4804 2300 378 251 96 16 chr21 1533183 1533370 -33374200 - L1MEc LINE L1 -3959 2437 2236 502 271 54 0 chr21 1533479 1533645 -33373925 - L1MB4 LINE L1 0 6180 6006 592 238 60 12 chr21 1533665 1533833 -33373737 - L1M4 LINE L1 -1281 4865 4690 2759 247 59 10 chr21 1533845 1534489 -33373081 - L1MB4 LINE L1 -180 6000 5389 2013 121 0 0 chr21 1534489 1534769 -33372801 - AluSq SINE Alu -31 282 3 2759 247 59 10 chr21 1534769 1535693 -33371877 - L1MB4 LINE L1 -791 5389 4352 1078 282 11 11 chr21 1535683 1536044 -33371526 - L1MB4 LINE L1 -2413 3733 3373 1999 126 0 3 chr21 1536619 1536905 -33370665 - AluSq SINE Alu -28 285 1 21 0 0 0 chr21 1536996 1537017 -33370553 + AT_rich Low_complexity Low_complexity 1 21 0 240 184 0 0 chr21 1537029 1537078 -33370492 + (CA)n Simple_repeat Simple_repeat 1 49 0 548 252 47 65 chr21 1537078 1537292 -33370278 - MIR SINE MIR -17 245 36 796 244 72 9 chr21 1537405 1537626 -33369944 - MER46A DNA MER2_type -1 235 1 1860 154 0 24 chr21 1537867 1538165 -33369405 + AluSx SINE Alu 1 291 -21 183 42 0 0 chr21 1538168 1538192 -33369378 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1540 155 121 6 chr21 1539541 1539984 -33367586 - L1MA4 LINE L1 -3 6297 5801 2250 154 37 2 chr21 1539981 1540206 -33367364 + L1M1 LINE L1 5367 5583 -717 399 41 0 0 chr21 1540206 1540255 -33367315 + (CAAAA)n Simple_repeat Simple_repeat 2 50 0 2037 134 0 0 chr21 1540257 1540540 -33367030 + AluSx SINE Alu 21 303 -9 2250 154 37 2 chr21 1540540 1540720 -33366850 + L1M1 LINE L1 5583 5789 -511 1211 219 62 3 chr21 1540769 1541061 -33366509 - L1MC3 LINE L1 -23 7762 7454 408 41 0 0 chr21 1541062 1541111 -33366459 + THE1A LTR MaLR 1 49 -306 952 55 8 0 chr21 1541111 1541238 -33366332 + THE1-int LTR MaLR 14 141 -1439 325 141 42 0 chr21 1541223 1541294 -33366276 + THE1-int LTR MaLR 1507 1580 0 286 116 0 0 chr21 1541294 1541337 -33366233 + THE1C LTR MaLR 1 43 -332 10006 103 9 8 chr21 1541337 1542754 -33364816 + THE1A-int LTR MaLR 163 1580 0 2348 103 20 8 chr21 1542754 1543105 -33364465 + THE1A LTR MaLR 1 355 0 818 210 44 6 chr21 1543105 1543286 -33364284 - L1MC3 LINE L1 -328 7457 7270 344 243 66 59 chr21 1543291 1543427 -33364143 - L1MA8 LINE L1 -25 6266 6130 10527 207 20 28 chr21 1543423 1547054 -33360516 - L1MC3 LINE L1 -508 7277 2405 1313 77 0 0 chr21 1547054 1547224 -33360346 - AluY SINE Alu -6 305 136 634 115 19 19 chr21 1547224 1547328 -33360242 + LTR1B LTR ERV1 723 826 0 478 190 111 0 chr21 1547328 1547451 -33360119 + MER67B LTR ERV1 60 156 -358 3004 159 45 34 chr21 1547461 1548144 -33359426 - LTR1B LTR ERV1 -88 697 1 1928 129 16 19 chr21 1548670 1548981 -33358589 - AluY SINE Alu -1 310 1 1890 161 0 0 chr21 1549336 1549635 -33357935 + AluSx SINE Alu 1 299 -13 2035 177 36 28 chr21 1552333 1552878 -33354692 + MLT2A2 LTR ERVL 1 551 -3 585 267 91 52 chr21 1552881 1553345 -33354225 - HAL1b LINE L1 -105 1243 762 743 272 58 28 chr21 1553455 1553782 -33353788 - HAL1b LINE L1 -779 569 233 2277 38 0 0 chr21 1553931 1554194 -33353376 + AluY SINE Alu 1 263 -48 230 0 33 0 chr21 1554208 1554238 -33353332 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 30 0 0 0 chr21 1554619 1554649 -33352921 + AT_rich Low_complexity Low_complexity 1 30 0 257 359 38 38 chr21 1554999 1555208 -33352362 + L3 LINE CR1 776 984 -593 362 369 0 0 chr21 1555768 1555879 -33351691 + MIR SINE MIR 39 149 -113 317 146 0 36 chr21 1556388 1556443 -33351127 + MER39 LTR ERV1 655 707 0 203 169 0 85 chr21 1556624 1556683 -33350887 + CT-rich Low_complexity Low_complexity 1 54 0 238 312 8 56 chr21 1556999 1557124 -33350446 + L2 LINE L2 3195 3313 0 774 230 8 60 chr21 1557176 1557411 -33350159 - HAL1 LINE L1 -754 1753 1531 711 287 60 11 chr21 1557412 1557778 -33349792 - HAL1 LINE L1 -868 1639 1256 422 190 84 7 chr21 1558096 1558238 -33349332 - HAL1 LINE L1 -1384 1123 971 2054 103 0 7 chr21 1559241 1559543 -33348027 + AluY SINE Alu 1 300 0 1146 297 47 45 chr21 1559591 1560076 -33347494 + MLT1E2 LTR MaLR 1 486 -140 2000 128 0 0 chr21 1560151 1560572 -33346998 + AluSq SINE Alu 3 423 0 321 26 0 0 chr21 1562069 1562107 -33345463 + (TG)n Simple_repeat Simple_repeat 1 38 0 33 80 0 0 chr21 1563555 1563630 -33343940 + AT_rich Low_complexity Low_complexity 1 75 0 1890 121 7 11 chr21 1564719 1565000 -33342570 - AluSx SINE Alu -32 280 1 851 125 0 0 chr21 1565025 1565153 -33342417 - AluSg/x SINE Alu -5 305 178 23 0 0 0 chr21 1565587 1565610 -33341960 + AT_rich Low_complexity Low_complexity 1 23 0 2192 108 15 6 chr21 1565610 1565952 -33341618 - L1PB1 LINE L1 -3 6148 5804 1428 162 37 5 chr21 1566011 1566387 -33341183 - L1MB3 LINE L1 0 6183 5777 234 0 0 0 chr21 1566387 1566413 -33341157 + (CA)n Simple_repeat Simple_repeat 1 26 0 1742 196 42 16 chr21 1566421 1566804 -33340766 - L1MB3 LINE L1 -378 5793 5401 1767 232 37 34 chr21 1566806 1567155 -33340415 + L1M4 LINE L1 4803 5149 -997 1817 118 17 37 chr21 1567155 1567451 -33340119 - AluSc SINE Alu -14 295 6 2168 128 0 10 chr21 1567456 1567769 -33339801 - AluSx SINE Alu -2 310 1 1767 232 37 34 chr21 1567769 1567981 -33339589 + L1M4 LINE L1 5152 5372 -774 861 248 30 52 chr21 1567982 1568298 -33339272 - L1MEc LINE L1 -3649 3292 3028 2517 52 0 0 chr21 1568298 1568604 -33338966 - AluY SINE Alu -5 306 1 861 248 30 52 chr21 1568604 1568769 -33338801 - L1MEc LINE L1 -3913 3028 2861 789 277 79 55 chr21 1568915 1569319 -33338251 - L1MEc LINE L1 -5355 1068 655 1217 300 49 44 chr21 1569328 1569918 -33337652 - L1MEc LINE L1 -5812 611 19 2401 60 0 3 chr21 1570316 1570616 -33336954 + AluY SINE Alu 2 300 -11 2249 195 45 10 chr21 1570688 1571180 -33336390 - LTR22 LTR ERVK 0 509 1 221 209 136 64 chr21 1571639 1571749 -33335821 - MIR SINE MIR -56 206 89 2388 75 0 0 chr21 1573002 1573296 -33334274 - AluY SINE Alu -17 294 1 3430 72 13 4 chr21 1573936 1574409 -33333161 + MER11A LTR ERVK 790 1266 0 7131 191 6 39 chr21 1574411 1575035 -33332535 - L1P LINE L1 -1226 4920 4277 1684 191 3 0 chr21 1575035 1575328 -33332242 - AluJb SINE Alu -18 294 1 7131 191 6 39 chr21 1575328 1575811 -33331759 - L1P LINE L1 -1869 4277 3876 2049 130 3 3 chr21 1575811 1576118 -33331452 - AluSc SINE Alu -2 307 1 7131 191 6 39 chr21 1576118 1576572 -33330998 - L1P LINE L1 -2270 3876 3409 513 301 57 66 chr21 1576594 1576929 -33330641 - MLT1H1 LTR MaLR -204 351 20 2411 74 0 0 chr21 1576930 1577226 -33330344 - AluY SINE Alu -15 296 1 289 215 116 14 chr21 1577252 1577411 -33330159 + L1ME LINE L1 5692 5866 -312 4199 184 11 25 chr21 1577442 1578254 -33329316 - L1MA8 LINE L1 -172 6119 5322 1932 149 10 0 chr21 1578254 1578550 -33329020 - AluSq SINE Alu -14 299 1 4199 184 11 25 chr21 1578550 1578757 -33328813 - L1MA8 LINE L1 -969 5322 5114 21 89 0 0 chr21 1579300 1579356 -33328214 + AT_rich Low_complexity Low_complexity 1 56 0 336 48 0 0 chr21 1579838 1579880 -33327690 + (CA)n Simple_repeat Simple_repeat 1 42 0 207 139 0 0 chr21 1580476 1580512 -33327058 + (TTG)n Simple_repeat Simple_repeat 2 37 0 1823 196 52 28 chr21 1580633 1581020 -33326550 - MSTD LTR MaLR 0 396 1 327 258 0 86 chr21 1581137 1581265 -33326305 + MER5B DNA MER1_type 19 135 -43 2343 57 0 0 chr21 1582850 1583178 -33324392 + AluY SINE Alu 1 328 0 240 35 0 0 chr21 1583988 1584017 -33323553 + (CA)n Simple_repeat Simple_repeat 2 30 0 1724 106 4 0 chr21 1584561 1584797 -33322773 - AluSx SINE Alu -16 296 60 3183 69 7 0 chr21 1584797 1585231 -33322339 - L1PA8 LINE L1 -2 6170 5734 1726 129 7 41 chr21 1585619 1585913 -33321657 - AluSx SINE Alu -18 294 11 26 30 0 0 chr21 1586114 1586147 -33321423 + AT_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr21 1587134 1587175 -33320395 + AT_rich Low_complexity Low_complexity 1 41 0 2175 114 3 0 chr21 1587297 1587594 -33319976 + AluSq SINE Alu 1 298 -15 617 316 43 8 chr21 1587807 1588063 -33319507 - LTR16A1 LTR ERVL -20 437 173 21 0 0 0 chr21 1588813 1588834 -33318736 + AT_rich Low_complexity Low_complexity 1 21 0 273 242 0 0 chr21 1588852 1588914 -33318656 - MIR SINE MIR -14 248 187 2123 130 0 0 chr21 1589866 1590159 -33317411 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 1590164 1590186 -33317384 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 1590221 1590254 -33317316 + AT_rich Low_complexity Low_complexity 1 33 0 216 67 0 0 chr21 1591269 1591299 -33316271 + (CA)n Simple_repeat Simple_repeat 1 30 0 628 294 43 7 chr21 1592130 1592406 -33315164 + L1ME4a LINE L1 5566 5851 -270 27 49 0 0 chr21 1592608 1592649 -33314921 + AT_rich Low_complexity Low_complexity 1 41 0 47 73 0 0 chr21 1593140 1593236 -33314334 + AT_rich Low_complexity Low_complexity 1 96 0 282 29 0 0 chr21 1593354 1593389 -33314181 + (GA)n Simple_repeat Simple_repeat 1 35 0 23 0 0 0 chr21 1593841 1593864 -33313706 + AT_rich Low_complexity Low_complexity 1 23 0 1172 85 0 0 chr21 1594234 1594387 -33313183 + AluSp SINE Alu 130 282 -31 180 0 0 0 chr21 1594394 1594414 -33313156 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 2093 98 35 0 chr21 1594425 1594711 -33312859 - AluSp SINE Alu -17 296 1 273 161 0 62 chr21 1594999 1595080 -33312490 + Charlie2 DNA MER1_type 2746 2821 -41 5135 159 42 29 chr21 1597375 1599070 -33308500 + L1MA5 LINE L1 4553 6271 -29 9045 117 5 1 chr21 1599070 1600352 -33307218 - HSMAR1 DNA Mariner 0 1287 1 5135 159 42 29 chr21 1600352 1600381 -33307189 + L1MA5 LINE L1 6271 6298 -2 1004 209 34 8 chr21 1600871 1601110 -33306460 - Zaphod DNA AcHobo -8 4015 3771 219 276 102 31 chr21 1602479 1602606 -33304964 - L2 LINE L2 -1 3271 3136 36 0 0 0 chr21 1602840 1602876 -33304694 + AT_rich Low_complexity Low_complexity 1 36 0 656 289 10 5 chr21 1604640 1604841 -33302729 - AluSg/x SINE Alu -5 305 104 985 254 28 43 chr21 1605046 1605543 -33302027 + MLT1H1 LTR MaLR 1 595 0 186 43 0 0 chr21 1605697 1605720 -33301850 + (TC)n Simple_repeat Simple_repeat 2 24 0 225 198 66 66 chr21 1605721 1605812 -33301758 + LTR66 LTR ERVL 177 267 -343 219 139 0 0 chr21 1606179 1606215 -33301355 + (CA)n Simple_repeat Simple_repeat 2 37 0 31 44 0 0 chr21 1606781 1606826 -33300744 + AT_rich Low_complexity Low_complexity 1 45 0 26 88 0 0 chr21 1607365 1607433 -33300137 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 53 chr21 1608028 1608045 -33299525 + AT_rich Low_complexity Low_complexity 1 17 -19 2002 124 3 20 chr21 1608045 1608351 -33299219 - AluSq SINE Alu -12 301 1 23 0 0 53 chr21 1608351 1608371 -33299199 + AT_rich Low_complexity Low_complexity 17 36 0 282 341 11 0 chr21 1608909 1608997 -33298573 + L2 LINE L2 3223 3311 -2 713 231 44 59 chr21 1609082 1609436 -33298134 + L2 LINE L2 2321 2755 -559 1220 329 45 11 chr21 1609626 1610088 -33297482 + L2 LINE L2 2815 3292 -21 2189 104 3 0 chr21 1610092 1610380 -33297190 + AluSc SINE Alu 5 293 -16 2234 132 5 27 chr21 1611475 1611847 -33295723 - THE1B LTR MaLR 0 364 1 217 217 0 33 chr21 1611854 1611914 -33295656 + (TAA)n Simple_repeat Simple_repeat 2 59 0 26 0 0 0 chr21 1612537 1612563 -33295007 + AT_rich Low_complexity Low_complexity 1 26 0 189 147 0 0 chr21 1614982 1615016 -33292554 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 271 43 0 43 chr21 1615101 1615148 -33292422 + (TTG)n Simple_repeat Simple_repeat 1 45 0 210 143 0 0 chr21 1615361 1615396 -33292174 + (T)n Simple_repeat Simple_repeat 1 35 0 248 172 0 16 chr21 1616939 1617003 -33290567 + (CA)n Simple_repeat Simple_repeat 2 64 0 336 24 0 0 chr21 1617062 1617103 -33290467 + (TG)n Simple_repeat Simple_repeat 2 42 0 186 118 0 0 chr21 1617891 1617925 -33289645 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 2377 142 37 40 chr21 1617969 1618398 -33289172 + MSTA LTR MaLR 1 428 0 208 158 35 18 chr21 1619403 1619460 -33288110 + T-rich Low_complexity Low_complexity 2 59 0 196 321 62 0 chr21 1619569 1619650 -33287920 + MIR SINE MIR 60 145 -63 1488 208 0 0 chr21 1621877 1622151 -33285419 + AluJo SINE Alu 30 303 -9 571 99 0 0 chr21 1622154 1622235 -33285335 + MER72 LTR ERV1 642 722 0 257 235 47 0 chr21 1623580 1623665 -33283905 + L1MC4 LINE L1 6614 6702 -1340 1473 173 123 62 chr21 1623691 1624032 -33283538 - MLT2D LTR ERVL -48 366 5 198 71 0 0 chr21 1624581 1624609 -33282961 + (CA)n Simple_repeat Simple_repeat 1 28 0 4972 189 76 41 chr21 1625189 1626700 -33280870 - MER52A LTR ERV1 0 1755 1 2399 66 0 10 chr21 1627352 1627654 -33279916 - AluY SINE Alu -12 299 1 402 101 0 0 chr21 1627670 1627739 -33279831 + (CA)n Simple_repeat Simple_repeat 2 70 0 285 204 0 0 chr21 1627739 1627783 -33279787 - FAM SINE Alu -69 106 63 2039 116 0 3 chr21 1627909 1628193 -33279377 + AluSq SINE Alu 1 283 -30 2265 185 46 78 chr21 1628654 1628746 -33278824 + L1MA9 LINE L1 5519 5612 -700 1867 158 7 0 chr21 1628746 1629037 -33278533 + AluSx SINE Alu 1 293 -19 2265 185 46 78 chr21 1629037 1629550 -33278020 + L1MA9 LINE L1 5612 6105 -207 447 207 43 0 chr21 1629552 1629668 -33277902 + L1MA9 LINE L1 6156 6276 -36 733 191 0 22 chr21 1630023 1630159 -33277411 + AluJo/FLAM SINE Alu 1 133 -179 383 179 0 0 chr21 1630160 1630227 -33277343 + AluJ/FRAM SINE Alu 228 294 -8 231 189 0 0 chr21 1631002 1631039 -33276531 + 5S rRNA rRNA 2 38 -83 709 263 117 17 chr21 1631044 1631482 -33276088 + L2 LINE L2 2413 2957 -357 256 353 8 15 chr21 1631503 1631636 -33275934 - MLT1J2 LTR MaLR -14 436 305 2131 109 7 0 chr21 1631974 1632257 -33275313 - AluSx SINE Alu -27 285 1 307 284 125 83 chr21 1632257 1632641 -33274929 + MLT1J1 LTR MaLR 28 427 -19 197 290 9 37 chr21 1632651 1632758 -33274812 + L2 LINE L2 3085 3188 -125 829 251 23 32 chr21 1632768 1632987 -33274583 + MER58A DNA MER1_type 2 218 -6 523 252 16 8 chr21 1632994 1633117 -33274453 + L2 LINE L2 3190 3313 0 941 235 118 76 chr21 1633134 1633619 -33273951 + MLT1D LTR MaLR 1 505 0 24 32 0 0 chr21 1634844 1634875 -33272695 + AT_rich Low_complexity Low_complexity 1 31 0 1188 274 62 32 chr21 1635896 1636480 -33271090 - HAL1b LINE L1 -736 612 12 1547 173 74 28 chr21 1637051 1637403 -33270167 + THE1C LTR MaLR 5 372 -3 6138 168 40 58 chr21 1637406 1638744 -33268826 + THE1C-int LTR MaLR 1 1314 -266 339 49 0 0 chr21 1638744 1638785 -33268785 - MLT2A2 LTR ERVL 0 464 424 216 0 0 0 chr21 1638786 1638810 -33268760 + (TA)n Simple_repeat Simple_repeat 2 25 0 2415 89 3 0 chr21 1638814 1639127 -33268443 - MLT2A2 LTR ERVL -139 314 1 41267 95 11 8 chr21 1639127 1644760 -33262810 - HERVL-A2-A2 LTR ERVL 0 5654 1 3156 107 16 7 chr21 1644760 1645209 -33262361 - MLT2A2 LTR ERVL 0 453 1 1702 119 15 4 chr21 1645209 1645477 -33262093 + THE1C-int LTR MaLR 1310 1580 0 1582 161 79 37 chr21 1645479 1645834 -33261736 + THE1C LTR MaLR 3 372 -3 351 0 0 0 chr21 1645834 1645873 -33261697 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 700 14 88 7 chr21 1645887 1646034 -33261536 + (TA)n Simple_repeat Simple_repeat 2 160 0 1822 229 76 19 chr21 1646034 1646466 -33261104 - MLT2B1 LTR ERVL -63 457 1 4409 186 21 10 chr21 1646508 1647334 -33260236 - ERVL-B1 LTR ERVL -235 5529 4695 1408 285 71 7 chr21 1647330 1647869 -33259701 - ERVL-B1 LTR ERVL -5084 591 5 948 258 98 24 chr21 1647873 1648286 -33259284 - MLT2B1 LTR ERVL 0 464 1 4490 222 73 42 chr21 1648330 1650329 -33257241 + L1MC3 LINE L1 3530 5581 -743 814 118 0 0 chr21 1650334 1650473 -33257097 - AluY SINE Alu 0 310 172 2620 221 87 15 chr21 1650478 1651206 -33256364 + L1MC3 LINE L1 5584 6363 -1422 1362 219 19 41 chr21 1651210 1651529 -33256041 + MSTD LTR MaLR 84 395 -1 445 98 12 12 chr21 1651530 1651612 -33255958 + (TCTA)n Simple_repeat Simple_repeat 2 83 0 2227 140 5 27 chr21 1652658 1653030 -33254540 + THE1B LTR MaLR 1 364 0 50 42 0 0 chr21 1654296 1654367 -33253203 + AT_rich Low_complexity Low_complexity 1 71 0 1301 78 0 31 chr21 1654458 1654649 -33252921 + L1PA8 LINE L1 5987 6171 -1 204 179 0 0 chr21 1654946 1654985 -33252585 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 199 93 47 0 chr21 1655601 1655644 -33251926 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr21 1655908 1655929 -33251641 + AT_rich Low_complexity Low_complexity 1 21 0 188 382 0 0 chr21 1657042 1657097 -33250473 + MIR SINE MIR 83 137 -125 25 0 0 0 chr21 1657183 1657208 -33250362 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr21 1657267 1657296 -33250274 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr21 1657320 1657349 -33250221 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr21 1657674 1657702 -33249868 + (T)n Simple_repeat Simple_repeat 1 28 0 4197 189 42 9 chr21 1658170 1658232 -33249338 - L1MC2 LINE L1 -6 6338 6280 2329 87 7 0 chr21 1658232 1658531 -33249039 + AluY SINE Alu 1 301 -10 4197 189 42 9 chr21 1658531 1659364 -33248206 - L1MC2 LINE L1 -64 6280 5413 2006 105 36 0 chr21 1659373 1659678 -33247892 - L1PA16 LINE L1 -9 6157 5842 715 131 78 0 chr21 1659678 1659831 -33247739 - L1MC2 LINE L1 -2365 5420 5256 2339 103 0 0 chr21 1661039 1661340 -33246230 - AluSq SINE Alu -12 301 1 941 203 17 0 chr21 1661725 1661902 -33245668 - AluSg/x SINE Alu -1 309 130 2128 133 0 9 chr21 1661902 1662217 -33245353 - AluSx SINE Alu 0 312 1 558 89 13 0 chr21 1662627 1662706 -33244864 - MADE1 DNA Mariner 0 80 1 913 266 22 0 chr21 1664052 1664274 -33243296 + MIR SINE MIR 36 262 0 526 220 55 0 chr21 1664839 1664948 -33242622 + MIR3 SINE MIR 82 196 -12 225 0 0 0 chr21 1665736 1665761 -33241809 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 1666235 1666256 -33241314 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr21 1666892 1666936 -33240634 + AT_rich Low_complexity Low_complexity 1 44 0 189 299 75 47 chr21 1667864 1667971 -33239599 + L2 LINE L2 3197 3306 -7 32 0 0 0 chr21 1668856 1668888 -33238682 + AT_rich Low_complexity Low_complexity 1 32 0 1203 242 168 66 chr21 1670167 1670654 -33236916 - MLT1F LTR MaLR 0 542 6 258 32 0 0 chr21 1671231 1671262 -33236308 + (TA)n Simple_repeat Simple_repeat 1 31 0 531 31 0 0 chr21 1671261 1671326 -33236244 + (GA)n Simple_repeat Simple_repeat 2 66 0 428 261 27 9 chr21 1671328 1671439 -33236131 + MER5B DNA MER1_type 63 175 -3 9650 206 11 24 chr21 1671678 1673914 -33233656 + L1 LINE L1 2286 4492 -1654 1136 157 0 0 chr21 1673915 1674093 -33233477 + AluSp SINE Alu 136 313 0 3205 227 9 1 chr21 1674093 1674828 -33232742 + L1 LINE L1 4479 5219 -927 470 127 7 72 chr21 1674829 1675125 -33232445 + (CCCTAA)n Simple_repeat Simple_repeat 1 276 0 2908 155 2 14 chr21 1675269 1675786 -33231784 - TAR1 Satellite telomeric -43 2068 1558 387 275 33 0 chr21 1677049 1677169 -33230401 + MIR SINE MIR 84 207 -55 236 30 30 0 chr21 1677378 1677411 -33230159 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 520 285 40 7 chr21 1678388 1678539 -33229031 - MIR3 SINE MIR -34 174 19 353 286 29 21 chr21 1678796 1678936 -33228634 - MIR SINE MIR -87 175 35 214 208 0 21 chr21 1679193 1679241 -33228329 + MIR SINE MIR 206 252 -10 270 284 51 60 chr21 1679891 1679991 -33227579 + MIR3 SINE MIR 79 178 -30 563 251 221 5 chr21 1680531 1680730 -33226840 - MIR SINE MIR -7 255 14 2335 92 0 3 chr21 1681159 1681462 -33226108 - AluSg SINE Alu -8 302 1 203 274 105 21 chr21 1682150 1682245 -33225325 + L2 LINE L2 3211 3313 0 550 314 41 18 chr21 1682547 1682767 -33224803 + MIR SINE MIR 2 226 -36 1192 138 33 38 chr21 1682889 1683099 -33224471 - AluJo SINE Alu -98 214 6 276 70 0 131 chr21 1683563 1683762 -33223808 + (TGGGGG)n Simple_repeat Simple_repeat 4 176 0 288 173 74 0 chr21 1683763 1683844 -33223726 + (TGGG)n Simple_repeat Simple_repeat 3 89 0 639 241 99 0 chr21 1684526 1684667 -33222903 + FRAM SINE Alu 1 155 -21 2076 122 0 3 chr21 1684669 1684963 -33222607 + AluSx SINE Alu 1 293 -19 22 0 0 0 chr21 1685239 1685261 -33222309 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 1685336 1685360 -33222210 + AT_rich Low_complexity Low_complexity 1 24 0 360 363 112 35 chr21 1685625 1685884 -33221686 + L1MDb LINE L1 365 643 -5766 393 261 102 25 chr21 1685969 1686126 -33221444 + L1MDb LINE L1 454 622 -5787 302 249 36 36 chr21 1687599 1687764 -33219806 - HSREP522 Satellite telomeric -290 232 68 334 271 43 53 chr21 1687877 1688180 -33219390 - HSREP522 Satellite telomeric -111 411 112 229 310 17 35 chr21 1689415 1689589 -33217981 + GA-rich Low_complexity Low_complexity 5 175 0 334 183 0 14 chr21 1690362 1690433 -33217137 - L1 LINE L1 -3308 2838 2769 219 36 0 0 chr21 1690440 1690468 -33217102 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1721 142 32 4 chr21 1690468 1690744 -33216826 - AluSx SINE Alu -27 285 2 2254 218 14 10 chr21 1690744 1691239 -33216331 - L1 LINE L1 -2203 3943 3447 1675 243 16 0 chr21 1691241 1691612 -33215958 - MSTB LTR MaLR -49 377 1 3237 204 21 3 chr21 1691612 1692233 -33215337 - MSTB-int LTR MaLR 0 1651 1020 4555 273 37 26 chr21 1692235 1693804 -33213766 - L1P LINE L1 -2696 3450 1860 2045 142 0 0 chr21 1693804 1694099 -33213471 + AluSx SINE Alu 1 295 -17 4555 273 37 26 chr21 1694099 1694224 -33213346 - L1P LINE L1 -4286 1860 1738 5596 128 41 53 chr21 1694237 1697009 -33210561 + SVA Other Other 433 1384 -2 351 0 0 0 chr21 1697038 1697077 -33210493 + (TG)n Simple_repeat Simple_repeat 2 40 0 323 310 63 7 chr21 1698464 1698606 -33208964 + L2 LINE L2 2722 2871 -443 359 273 0 0 chr21 1699412 1699500 -33208070 - L1MC4 LINE L1 -1339 6703 6616 22 56 0 0 chr21 1702390 1702426 -33205144 + AT_rich Low_complexity Low_complexity 1 36 0 617 308 85 21 chr21 1702565 1702896 -33204674 + L1ME4a LINE L1 5510 5861 -260 338 282 86 0 chr21 1703347 1703464 -33204106 - L2 LINE L2 0 3313 3187 1229 348 34 38 chr21 1703678 1704264 -33203306 + L1MEc LINE L1 365 948 -5773 248 231 58 70 chr21 1704334 1704490 -33203080 + L1MEc LINE L1 1298 1451 -5270 622 236 19 66 chr21 1704643 1704855 -33202715 + L1MEc LINE L1 2269 2470 -4251 1314 246 55 28 chr21 1704835 1704884 -33202686 + L1MEc LINE L1 2350 2396 -4144 303 28 0 0 chr21 1704884 1704920 -33202650 + (TA)n Simple_repeat Simple_repeat 1 36 0 1314 246 55 28 chr21 1704920 1705518 -33202052 + L1MEc LINE L1 2396 3016 -3524 1099 292 45 35 chr21 1705535 1705935 -33201635 + L1MEc LINE L1 3116 3519 -3021 1413 244 20 11 chr21 1705948 1706305 -33201265 + MLT1A1 LTR MaLR 6 365 0 4216 82 6 10 chr21 1706575 1707547 -33200023 + L1P2 LINE L1 4851 5816 -338 180 0 0 0 chr21 1708137 1708157 -33199413 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1039 41 0 0 chr21 1708159 1708303 -33199267 - AluY SINE Alu 0 304 161 449 154 11 0 chr21 1708335 1708426 -33199144 + (CA)n Simple_repeat Simple_repeat 1 92 0 24 85 0 0 chr21 1709832 1709891 -33197679 + AT_rich Low_complexity Low_complexity 1 59 0 332 213 0 27 chr21 1710583 1710658 -33196912 + MER5A DNA MER1_type 9 81 -108 1696 164 43 16 chr21 1711417 1711721 -33195849 - AluSx SINE Alu 0 312 1 23 33 0 0 chr21 1711723 1711753 -33195817 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr21 1712278 1712306 -33195264 + AT_rich Low_complexity Low_complexity 1 28 0 257 305 81 46 chr21 1713115 1713312 -33194258 - MIR SINE MIR -50 212 9 1937 101 0 4 chr21 1713939 1714197 -33193373 - AluY SINE Alu -5 306 50 21 57 0 0 chr21 1715985 1716020 -33191550 + AT_rich Low_complexity Low_complexity 1 35 0 24 67 0 0 chr21 1716855 1716900 -33190670 + AT_rich Low_complexity Low_complexity 1 45 0 725 249 61 0 chr21 1717167 1717364 -33190206 - L1MA4 LINE L1 -4 6296 6088 24 0 0 0 chr21 1717450 1717474 -33190096 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr21 1717722 1717745 -33189825 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr21 1718312 1718346 -33189224 + AT_rich Low_complexity Low_complexity 1 34 0 1723 68 0 5 chr21 1718516 1718735 -33188835 + AluY SINE Alu 84 301 -10 1822 148 34 3 chr21 1718745 1719043 -33188527 + AluSc SINE Alu 1 307 -2 25 0 0 0 chr21 1719056 1719081 -33188489 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr21 1719211 1719239 -33188331 + AT_rich Low_complexity Low_complexity 1 28 0 644 202 9 0 chr21 1719773 1719887 -33187683 - FLAM_A SINE Alu -15 118 4 2355 60 10 3 chr21 1720764 1721063 -33186507 - AluY SINE Alu -10 301 1 219 198 8 83 chr21 1722818 1722939 -33184631 + A-rich Low_complexity Low_complexity 5 116 0 398 378 5 15 chr21 1723403 1723599 -33183971 + MIR SINE MIR 63 256 -6 555 209 0 27 chr21 1723762 1723872 -33183698 + FLAM_A SINE Alu 4 110 -32 1032 189 53 66 chr21 1724335 1724579 -33182991 - MER21A LTR ERV1 -24 907 667 3149 194 49 23 chr21 1724573 1725232 -33182338 + MER44D DNA MER2_type 30 705 0 324 0 0 0 chr21 1725238 1725274 -33182296 + (TG)n Simple_repeat Simple_repeat 1 36 0 477 50 0 0 chr21 1725273 1725333 -33182237 + (GA)n Simple_repeat Simple_repeat 1 60 0 376 353 66 21 chr21 1725686 1725972 -33181598 + L2 LINE L2 2026 2324 -990 23 0 0 0 chr21 1726205 1726228 -33181342 + AT_rich Low_complexity Low_complexity 1 23 0 1645 215 55 27 chr21 1726285 1726761 -33180809 + LTR22B LTR ERVK 1 458 0 1800 122 25 7 chr21 1726765 1727044 -33180526 + HERVK22 LTR ERVK 12 295 -6542 817 247 54 0 chr21 1727052 1727238 -33180332 + MER58A DNA MER1_type 29 224 0 600 188 17 0 chr21 1727507 1727624 -33179946 + AluSp/q SINE Alu 171 289 -24 1739 160 21 4 chr21 1727993 1728297 -33179273 - AluSq SINE Alu 0 309 1 22 35 0 0 chr21 1729719 1729748 -33177822 + AT_rich Low_complexity Low_complexity 1 29 0 1602 195 7 0 chr21 1729869 1730161 -33177409 + AluSx SINE Alu 3 296 -16 19252 33 0 0 chr21 1730161 1733262 -33174308 + L1PA2 LINE L1 3054 6155 0 23 33 0 0 chr21 1734237 1734267 -33173303 + AT_rich Low_complexity Low_complexity 1 30 0 3499 57 15 4 chr21 1734550 1735005 -33172565 - L1PA4 LINE L1 0 6155 5696 1899 130 14 3 chr21 1735007 1735300 -33172270 - AluY SINE Alu -15 296 1 309 227 0 0 chr21 1736206 1736272 -33171298 + MER5A DNA MER1_type 16 81 -108 1996 110 0 0 chr21 1740142 1740415 -33167155 + AluY SINE Alu 1 273 -38 1615 188 17 3 chr21 1740529 1740821 -33166749 - AluSx SINE Alu -16 296 1 369 0 0 0 chr21 1741006 1741047 -33166523 + (CA)n Simple_repeat Simple_repeat 1 41 0 6586 74 31 3 chr21 1741857 1742727 -33164843 + MER11D LTR ERVK 1 894 -3 1624 187 0 7 chr21 1743851 1744145 -33163425 + AluSg SINE Alu 3 294 -16 289 354 127 25 chr21 1744773 1744931 -33162639 - L2 LINE L2 -2917 397 224 745 250 0 0 chr21 1745694 1745850 -33161720 - MER6B DNA MER2_type -54 156 1 1643 95 110 26 chr21 1746247 1746520 -33161050 + L1PA13 LINE L1 5861 6156 -7 1473 162 3 86 chr21 1746537 1746864 -33160706 + AluJb SINE Alu 3 302 -10 407 139 39 132 chr21 1747072 1747201 -33160369 + MLT1D LTR MaLR 92 208 -297 1258 242 21 3 chr21 1747207 1747496 -33160074 + AluJo SINE Alu 5 298 -14 1131 192 131 27 chr21 1747746 1748006 -33159564 + AluJo SINE Alu 1 287 -15 243 0 0 0 chr21 1748009 1748036 -33159534 + (GA)n Simple_repeat Simple_repeat 2 28 0 690 229 7 0 chr21 1748037 1748177 -33159393 - AluJo SINE Alu -148 164 24 1477 194 7 14 chr21 1748270 1748564 -33159006 + AluJb SINE Alu 1 292 -20 321 279 13 0 chr21 1748565 1748644 -33158926 + L1MB8 LINE L1 5495 5574 -588 683 202 0 31 chr21 1748670 1748799 -33158771 - FLAM_A SINE Alu -8 125 1 2671 214 22 26 chr21 1748799 1749420 -33158150 + L1MB8 LINE L1 5555 6173 -5 1572 172 3 35 chr21 1749441 1749731 -33157839 + AluJo SINE Alu 1 281 -31 1189 122 0 6 chr21 1749749 1749913 -33157657 + AluSq SINE Alu 1 163 -150 1484 133 0 5 chr21 1749926 1750144 -33157426 + AluSg/x SINE Alu 77 293 -17 277 255 11 11 chr21 1750167 1750261 -33157309 - LTR37A LTR ERV1 -93 333 240 1356 210 3 21 chr21 1750426 1750717 -33156853 - AluJo SINE Alu -26 286 1 648 210 0 8 chr21 1750748 1750872 -33156698 - FLAM_C SINE Alu -20 123 1 1326 254 78 18 chr21 1750972 1751461 -33156109 + L2 LINE L2 2458 2975 -339 1713 186 44 0 chr21 1751582 1751878 -33155692 - AluJo SINE Alu -3 309 1 1508 184 19 61 chr21 1751879 1752238 -33155332 - MLT1D LTR MaLR 0 505 162 690 193 0 0 chr21 1752238 1752357 -33155213 + AluJo SINE Alu 2 120 -192 1546 212 10 7 chr21 1752381 1752688 -33154882 + AluJo SINE Alu 1 308 -4 322 260 14 0 chr21 1752689 1752762 -33154808 + MER21B LTR ERV1 17 90 -773 715 160 53 124 chr21 1752856 1753081 -33154489 + MER58 DNA MER1_type 2189 2397 -23 237 260 117 26 chr21 1753096 1753173 -33154397 + L3 LINE CR1 1186 1269 -308 839 240 0 31 chr21 1753250 1753446 -33154124 + AluJo SINE Alu 108 297 -15 2162 105 7 0 chr21 1753543 1753837 -33153733 + AluSc SINE Alu 1 296 -13 1578 196 33 0 chr21 1753837 1754169 -33153401 + L1MB4 LINE L1 5332 5674 -506 2034 169 14 41 chr21 1754242 1754685 -33152885 + L1MB4 LINE L1 5693 6123 -57 195 227 0 0 chr21 1754811 1754855 -33152715 - MIR SINE MIR -152 110 67 252 204 0 0 chr21 1755553 1755602 -33151968 - MIR SINE MIR -56 206 158 2719 52 26 0 chr21 1755618 1755963 -33151607 - L1PA7 LINE L1 -30 6124 5771 1312 156 45 0 chr21 1756156 1756380 -33151190 - LOR1a LTR ERV1 0 497 264 1691 118 12 20 chr21 1756966 1757129 -33150441 - AluSq SINE Alu -23 290 128 228 35 0 0 chr21 1757129 1757158 -33150412 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1691 118 12 20 chr21 1757158 1757248 -33150322 - AluSq SINE Alu -185 128 39 548 200 0 0 chr21 1757248 1757343 -33150227 - FLAM_A SINE Alu -27 115 21 259 261 0 15 chr21 1757381 1757446 -33150124 + L1ME1 LINE L1 3492 3555 -2591 2010 228 77 57 chr21 1757651 1758394 -33149176 + L1ME1 LINE L1 5408 6165 -1 22 0 0 0 chr21 1758671 1758693 -33148877 + AT_rich Low_complexity Low_complexity 1 22 0 235 258 32 0 chr21 1759314 1759376 -33148194 + L1MB7 LINE L1 5885 5948 -236 1902 134 7 7 chr21 1759400 1759710 -33147860 + AluSx SINE Alu 1 312 0 523 129 20 50 chr21 1759740 1759841 -33147729 + L1MA4A LINE L1 6059 6156 -147 1589 143 53 0 chr21 1760821 1761066 -33146504 + AluSx SINE Alu 41 298 -14 279 104 0 0 chr21 1761493 1761541 -33146029 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 479 273 16 0 chr21 1761655 1761783 -33145787 + L1MC4 LINE L1 7770 7899 -143 585 231 8 0 chr21 1762322 1762439 -33145131 - FLAM_C SINE Alu -25 118 1 1624 205 3 0 chr21 1763079 1763367 -33144203 - AluJo SINE Alu -17 295 7 441 221 0 0 chr21 1763640 1763717 -33143853 + AluJ/FLAM SINE Alu 3 79 -233 1554 254 47 4 chr21 1763718 1764203 -33143367 + L1M4 LINE L1 4855 5360 -786 473 214 60 71 chr21 1764207 1764274 -33143296 + L1MB7 LINE L1 5040 5106 -1040 2186 117 7 0 chr21 1764274 1764574 -33142996 + AluY SINE Alu 1 302 -9 473 214 60 71 chr21 1764574 1764674 -33142896 + L1MB7 LINE L1 5106 5205 -941 1822 216 58 66 chr21 1764776 1764944 -33142626 + L1MB7 LINE L1 5221 5389 -795 1601 164 3 50 chr21 1764944 1765242 -33142328 + AluJb SINE Alu 22 305 -7 1822 216 58 66 chr21 1765242 1765934 -33141636 + L1MB7 LINE L1 5389 6175 -9 1515 211 24 14 chr21 1767795 1768084 -33139486 + AluJo SINE Alu 1 292 -20 844 205 141 25 chr21 1768204 1768487 -33139083 + MER33 DNA MER1_type 8 323 -1 468 214 54 9 chr21 1769152 1769264 -33138306 - Tigger1 DNA MER2_type 0 2418 2302 10611 147 27 24 chr21 1769262 1769561 -33138009 - Tigger1 DNA MER2_type -374 2044 1748 2226 110 13 0 chr21 1769561 1769860 -33137710 - AluSp SINE Alu -10 303 1 10611 147 27 24 chr21 1769860 1770139 -33137431 - Tigger1 DNA MER2_type -670 1748 1471 2164 123 0 0 chr21 1770139 1770432 -33137138 - AluSc SINE Alu -16 293 1 10611 147 27 24 chr21 1770432 1770466 -33137104 - Tigger1 DNA MER2_type -947 1471 1439 1281 207 24 30 chr21 1770466 1770761 -33136809 + AluJb SINE Alu 1 293 -19 10611 147 27 24 chr21 1770761 1772158 -33135412 - Tigger1 DNA MER2_type -979 1439 26 1921 155 3 17 chr21 1772738 1773034 -33134536 + AluSx SINE Alu 1 292 -20 1833 131 13 34 chr21 1773378 1773504 -33134066 + AluSg SINE Alu 3 130 -180 264 59 0 0 chr21 1773504 1773538 -33134032 + (TAA)n Simple_repeat Simple_repeat 3 36 0 1833 131 13 34 chr21 1773538 1773709 -33133861 + AluSg SINE Alu 130 294 -16 238 163 0 0 chr21 1774220 1774263 -33133307 - L1MC/D LINE L1 -2002 5806 5764 27 29 0 0 chr21 1774679 1774713 -33132857 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr21 1775562 1775588 -33131982 + AT_rich Low_complexity Low_complexity 1 26 0 673 210 45 13 chr21 1775793 1775950 -33131620 + AluJb SINE Alu 137 298 -14 758 200 0 0 chr21 1776082 1776207 -33131363 + FLAM_C SINE Alu 1 125 -8 1113 219 17 9 chr21 1776223 1776456 -33131114 + AluJo SINE Alu 1 235 -77 2451 70 0 7 chr21 1776505 1776804 -33130766 - AluY SINE Alu -14 297 1 1789 174 23 0 chr21 1776974 1777273 -33130297 + AluSx SINE Alu 1 306 -6 1653 207 6 6 chr21 1778417 1778769 -33128801 + L1MB3 LINE L1 5480 5831 -352 752 171 0 0 chr21 1778769 1778886 -33128684 + FLAM_C SINE Alu 1 117 -16 274 178 0 6 chr21 1778929 1778995 -33128575 + L1PB4 LINE L1 6091 6143 -13 302 265 76 117 chr21 1779072 1779336 -33128234 + L1M2a LINE L1 220 472 -6696 1216 318 39 65 chr21 1779457 1780569 -33127001 + L1P4 LINE L1 1229 2152 -5429 6561 253 19 16 chr21 1780568 1782515 -33125055 + L1P4 LINE L1 2570 4534 -3050 1964 149 24 0 chr21 1782515 1782811 -33124759 - AluSx SINE Alu -7 305 3 6561 253 19 16 chr21 1782811 1783413 -33124157 + L1P4 LINE L1 4534 5133 -2451 2097 135 0 3 chr21 1783423 1783720 -33123850 + AluSq SINE Alu 1 296 -17 552 110 71 0 chr21 1783720 1783993 -33123577 + (TA)n Simple_repeat Simple_repeat 1 292 0 4503 215 44 17 chr21 1784039 1784967 -33122603 + L1P4 LINE L1 5190 6092 -1511 7607 22 0 2 chr21 1784967 1786106 -33121464 + L1PA3 LINE L1 5043 6155 0 4503 215 44 17 chr21 1786106 1786179 -33121391 + L1P4 LINE L1 6092 6162 -1441 2169 117 10 0 chr21 1786179 1786486 -33121084 + AluSq SINE Alu 4 313 0 4503 215 44 17 chr21 1786486 1787289 -33120281 + L1P4 LINE L1 6162 7159 -444 290 195 34 2 chr21 1787333 1787407 -33120163 + L1MA6 LINE L1 5705 5780 -374 2340 165 47 2 chr21 1787532 1788022 -33119548 + L1MA6 LINE L1 5789 6300 0 1898 138 0 64 chr21 1788027 1788236 -33119334 + AluSx SINE Alu 1 183 -129 7658 26 0 0 chr21 1788236 1789938 -33117632 + L1PA3 LINE L1 4471 6155 0 1898 138 0 64 chr21 1789938 1790055 -33117515 + AluSx SINE Alu 183 306 -6 1468 261 34 11 chr21 1790055 1790499 -33117071 + L1MCa LINE L1 277 730 -5834 319 283 0 19 chr21 1790588 1790694 -33116876 + L1MCa LINE L1 516 619 -5426 2271 100 0 0 chr21 1791434 1791734 -33115836 + AluY SINE Alu 1 300 -11 183 80 0 0 chr21 1792097 1792122 -33115448 + (T)n Simple_repeat Simple_repeat 1 25 0 1971 118 52 0 chr21 1792919 1793208 -33114362 - AluSg SINE Alu -6 304 1 1892 186 72 20 chr21 1793481 1793954 -33113616 - L1MA9 LINE L1 -20 6292 5790 285 29 0 0 chr21 1793954 1793988 -33113582 + (CA)n Simple_repeat Simple_repeat 1 34 0 1892 186 72 20 chr21 1793988 1794015 -33113555 - L1MA9 LINE L1 -522 5790 5766 714 261 68 0 chr21 1794037 1794198 -33113372 - AluJo SINE Alu -54 258 87 1917 127 7 0 chr21 1794198 1794473 -33113097 - AluSg SINE Alu -33 277 1 1390 208 12 6 chr21 1794474 1794801 -33112769 - L1MA9 LINE L1 -585 5727 5399 2393 240 48 34 chr21 1794861 1795603 -33111967 - L1MA9 LINE L1 -836 5310 4551 2262 121 0 0 chr21 1795603 1795910 -33111660 - AluSc SINE Alu -2 307 1 2393 240 48 34 chr21 1795910 1796054 -33111516 - L1MA9 LINE L1 -1595 4551 4411 250 128 0 0 chr21 1796054 1796093 -33111477 + MADE1 DNA Mariner 1 39 -41 526 232 30 6 chr21 1796096 1796260 -33111310 - L1M4 LINE L1 -1728 4418 4251 357 43 0 0 chr21 1796644 1796691 -33110879 + (TG)n Simple_repeat Simple_repeat 2 48 0 30 0 0 0 chr21 1797157 1797187 -33110383 + AT_rich Low_complexity Low_complexity 1 30 0 793 274 77 17 chr21 1797463 1797981 -33109589 + L1M4 LINE L1 3742 4290 -1856 1817 116 4 32 chr21 1798043 1798320 -33109250 + AluSx SINE Alu 37 305 -7 1443 148 124 16 chr21 1798530 1798825 -33108745 - AluSx SINE Alu 0 323 1 849 125 56 24 chr21 1798825 1799036 -33108534 + MER6 DNA MER2_type 633 865 0 2285 104 0 7 chr21 1799581 1799879 -33107691 - AluSc SINE Alu -13 296 1 1984 155 14 0 chr21 1800150 1800465 -33107105 + AluSx SINE Alu 1 312 0 32 26 0 0 chr21 1800724 1800763 -33106807 + AT_rich Low_complexity Low_complexity 1 39 0 476 138 11 0 chr21 1800769 1800863 -33106707 + L1PB1 LINE L1 6056 6150 -1 182 91 30 0 chr21 1800881 1800914 -33106656 + A-rich Low_complexity Low_complexity 3 36 0 1648 197 3 10 chr21 1801134 1801433 -33106137 + AluJb SINE Alu 1 297 -15 395 206 0 0 chr21 1801434 1801507 -33106063 + L1MB8 LINE L1 5499 5571 -613 614 208 0 54 chr21 1801510 1801659 -33105911 - FLAM_A SINE Alu -1 141 1 2041 213 38 58 chr21 1801659 1802227 -33105343 + L1MB8 LINE L1 5555 6110 -68 1531 222 0 0 chr21 1802227 1802533 -33105037 - AluJb SINE Alu -6 306 1 2041 213 38 58 chr21 1802533 1802598 -33104972 + L1MB8 LINE L1 6110 6175 -3 2216 126 3 3 chr21 1802600 1802909 -33104661 + AluSx SINE Alu 1 309 -3 1676 176 0 23 chr21 1802924 1803226 -33104344 + AluJo SINE Alu 11 305 -7 1084 191 0 22 chr21 1803481 1803659 -33103911 - AluJb SINE Alu -137 175 2 854 242 80 36 chr21 1803662 1803730 -33103840 + MER21B LTR ERV1 426 490 -441 1638 187 3 23 chr21 1803730 1804030 -33103540 + AluJo SINE Alu 6 299 -13 854 242 80 36 chr21 1804030 1804304 -33103266 + MER21B LTR ERV1 490 848 -83 2088 130 0 10 chr21 1804595 1804896 -33102674 + AluSg SINE Alu 1 298 -12 1479 207 35 3 chr21 1805472 1805810 -33101760 + L1MB4 LINE L1 5480 5828 -355 698 215 0 0 chr21 1805812 1805933 -33101637 + FLAM_C SINE Alu 1 121 -22 522 0 0 0 chr21 1805933 1805991 -33101579 + (TA)n Simple_repeat Simple_repeat 2 59 0 587 140 53 0 chr21 1806003 1806117 -33101453 + L1MB4 LINE L1 5820 5939 -241 2341 87 0 3 chr21 1806118 1806417 -33101153 + AluY SINE Alu 1 298 -13 2102 143 0 0 chr21 1806452 1806752 -33100818 + AluSc SINE Alu 1 300 -9 247 213 0 49 chr21 1807723 1807784 -33099786 + GA-rich Low_complexity Low_complexity 1 58 0 324 64 0 0 chr21 1807843 1807890 -33099680 + (CA)n Simple_repeat Simple_repeat 2 48 0 242 143 20 0 chr21 1808051 1808100 -33099470 + CT-rich Low_complexity Low_complexity 2 51 0 220 284 99 62 chr21 1808213 1808291 -33099279 + MIR SINE MIR 29 103 -159 2391 172 24 0 chr21 1808291 1808709 -33098861 - MSTA LTR MaLR 0 428 1 220 284 99 62 chr21 1808709 1808792 -33098778 + MIR SINE MIR 103 196 -66 21 36 0 0 chr21 1809765 1809793 -33097777 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr21 1810151 1810188 -33097382 + AT_rich Low_complexity Low_complexity 1 37 0 24 67 0 0 chr21 1811547 1811592 -33095978 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 1811780 1811826 -33095744 + AT_rich Low_complexity Low_complexity 1 46 0 197 321 161 0 chr21 1813350 1813431 -33094139 + MIR SINE MIR 118 211 -51 543 256 222 0 chr21 1813923 1814103 -33093467 - MER58A DNA MER1_type -4 220 1 3681 112 14 12 chr21 1814440 1815003 -33092567 + LTR6A LTR ERV1 1 564 0 22 0 0 0 chr21 1816145 1816167 -33091403 + AT_rich Low_complexity Low_complexity 1 22 0 2211 91 30 0 chr21 1816886 1817183 -33090387 + AluY SINE Alu 1 306 -5 2073 131 7 3 chr21 1817491 1817796 -33089774 + AluSx SINE Alu 1 306 -6 2338 110 0 0 chr21 1818089 1818398 -33089172 - AluSg1 SINE Alu 0 309 1 332 217 75 0 chr21 1818867 1818987 -33088583 - L1MC4 LINE L1 0 8042 7914 392 294 53 4 chr21 1819039 1819301 -33088269 + L1M4 LINE L1 2890 3164 -2982 319 306 18 0 chr21 1819428 1819598 -33087972 - L1M4 LINE L1 -3267 2879 2707 5115 165 34 19 chr21 1819747 1820068 -33087502 - L1PB2 LINE L1 -4 6147 5832 267 31 0 0 chr21 1820068 1820100 -33087470 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 2067 138 0 0 chr21 1820103 1820386 -33087184 - AluSq SINE Alu -30 283 1 5115 165 34 19 chr21 1820386 1821752 -33085818 - L1PB2 LINE L1 -320 5831 4430 470 144 54 36 chr21 1821771 1821938 -33085632 + (CATATA)n Simple_repeat Simple_repeat 4 173 0 604 138 63 6 chr21 1821928 1822264 -33085306 + (TATATG)n Simple_repeat Simple_repeat 1 355 0 731 172 7 31 chr21 1822321 1822613 -33084957 + (CATATA)n Simple_repeat Simple_repeat 1 285 0 594 173 29 6 chr21 1822613 1822786 -33084784 + (TATATG)n Simple_repeat Simple_repeat 3 179 0 2241 208 56 5 chr21 1822786 1823362 -33084208 - L1PB2 LINE L1 -1747 4399 3795 455 290 39 0 chr21 1823358 1823565 -33084005 - L1M4 LINE L1 -3597 2549 2335 2739 179 5 4 chr21 1823917 1824469 -33083101 - L1PA12 LINE L1 -1131 5015 4463 5850 113 17 2 chr21 1824471 1825609 -33081961 + L1PA12 LINE L1 5026 6168 0 276 77 0 0 chr21 1825814 1825853 -33081717 + (TA)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr21 1825922 1825944 -33081626 + AT_rich Low_complexity Low_complexity 1 22 0 697 192 26 75 chr21 1826021 1826287 -33081283 + L1M1 LINE L1 3245 3497 -4068 2326 221 60 42 chr21 1826322 1827511 -33080059 + L1M1 LINE L1 3460 4700 -2865 1634 157 15 7 chr21 1827522 1827796 -33079774 + AluSx SINE Alu 1 276 -36 689 185 36 21 chr21 1827796 1827981 -33079589 - MER41-int LTR ERV1 -3111 2475 1839 1330 186 22 4 chr21 1827980 1828249 -33079321 - MER41-int LTR ERV1 -3592 2354 2081 387 250 0 24 chr21 1829487 1829611 -33077959 + GA-rich Low_complexity Low_complexity 3 123 0 235 275 72 21 chr21 1830812 1831005 -33076565 - HSREP522 Satellite telomeric -291 231 29 4282 198 38 62 chr21 1833135 1833856 -33073714 - L1 LINE L1 -814 6751 6076 2144 124 0 0 chr21 1833856 1834154 -33073416 - AluSg SINE Alu -12 298 1 4282 198 38 62 chr21 1834154 1834811 -33072759 - L1 LINE L1 -1489 6076 5405 1591 283 75 57 chr21 1834794 1835017 -33072553 - L1 LINE L1 -5176 2389 2172 2139 143 0 0 chr21 1835017 1835317 -33072253 - AluSx SINE Alu -10 302 3 1591 283 75 57 chr21 1835317 1836758 -33070812 - L1 LINE L1 -5393 2172 17 2132 271 54 10 chr21 1836756 1837663 -33069907 - L1M4 LINE L1 -1635 4511 3565 2008 142 3 0 chr21 1838080 1838383 -33069187 - AluSx SINE Alu -8 304 1 1569 211 3 10 chr21 1839560 1839863 -33067707 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr21 1840100 1840121 -33067449 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 1845804 1845854 -33061716 + AT_rich Low_complexity Low_complexity 1 50 0 30 45 0 0 chr21 1847326 1847370 -33060200 + AT_rich Low_complexity Low_complexity 1 44 0 728 176 24 6 chr21 1847560 1847730 -33059840 + L1MB2 LINE L1 5998 6170 -1 1994 141 0 0 chr21 1847832 1848116 -33059454 + AluSx SINE Alu 1 284 -28 231 88 0 0 chr21 1848116 1848150 -33059420 + (CATA)n Simple_repeat Simple_repeat 2 35 0 464 136 0 0 chr21 1848468 1848534 -33059036 + AluS SINE Alu 1 66 -247 4935 224 15 9 chr21 1848556 1849844 -33057726 - L1PA15-16 LINE L1 -3891 2958 1664 1966 234 54 6 chr21 1851331 1852012 -33055558 - L1M4 LINE L1 -3119 3027 2314 436 262 67 20 chr21 1852029 1852178 -33055392 + MER31B LTR ERV1 85 240 -226 3419 113 6 2 chr21 1852178 1852681 -33054889 + MER41A-int LTR ERV1 5439 5943 -3 3819 103 20 2 chr21 1852681 1853223 -33054347 + MER41A LTR ERV1 1 552 -2 912 230 14 19 chr21 1853535 1853748 -33053822 + MER58C DNA MER1_type 4 215 0 2559 149 50 28 chr21 1853839 1854374 -33053196 - LTR10A LTR ERV1 -62 547 1 11613 220 19 42 chr21 1854421 1857443 -33050127 - LTR10A-int LTR ERV1 -1 6648 3695 2225 60 6 0 chr21 1857419 1857734 -33049836 - LTR10A-int LTR ERV1 -4319 2577 2261 835 242 85 7 chr21 1860974 1861267 -33046303 + L1ME3A LINE L1 5854 6169 -1 1458 172 52 43 chr21 1862108 1862434 -33045136 - MER44D DNA MER2_type -6 603 5 240 261 46 0 chr21 1863050 1863115 -33044455 - L2 LINE L2 -1 3271 3204 23 0 0 0 chr21 1864605 1864628 -33042942 + AT_rich Low_complexity Low_complexity 1 23 0 625 144 0 76 chr21 1864831 1864963 -33042607 + L1PB3 LINE L1 6033 6154 0 25 0 0 0 chr21 1864963 1864988 -33042582 + AT_rich Low_complexity Low_complexity 1 25 0 190 370 20 20 chr21 1864999 1865099 -33042471 + MIR SINE MIR 33 132 -76 24 32 0 0 chr21 1865186 1865217 -33042353 + AT_rich Low_complexity Low_complexity 1 31 0 202 91 45 23 chr21 1865367 1865411 -33042159 + (TCTCTG)n Simple_repeat Simple_repeat 1 45 0 1544 208 31 29 chr21 1866154 1866567 -33041003 - L1MC3 LINE L1 -1722 6063 5650 860 287 36 17 chr21 1866593 1867013 -33040557 - L1MEc LINE L1 -3655 2560 2171 276 167 30 0 chr21 1867033 1867099 -33040471 - L1M1 LINE L1 -4609 2956 2889 318 306 56 32 chr21 1867160 1867376 -33040194 - L1MEc LINE L1 -4865 1531 1311 435 311 17 6 chr21 1867385 1867562 -33040008 - L1MEc LINE L1 -5126 1270 1092 21 0 0 0 chr21 1867622 1867643 -33039927 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 1867889 1867910 -33039660 + AT_rich Low_complexity Low_complexity 1 21 0 2149 103 3 3 chr21 1868012 1868428 -33039142 - AluSp SINE Alu 0 416 1 231 36 0 0 chr21 1868627 1868655 -33038915 + (TTG)n Simple_repeat Simple_repeat 3 30 0 564 344 45 35 chr21 1868669 1868957 -33038613 - L1MEc LINE L1 -6069 327 37 2667 29 3 0 chr21 1868970 1869279 -33038291 - AluY SINE Alu -1 310 1 3556 212 44 23 chr21 1869338 1870431 -33037139 - L1MB7 LINE L1 -26 6656 5540 2009 248 44 38 chr21 1870418 1871009 -33036561 - L1MB7 LINE L1 -3174 3470 2884 2177 19 16 0 chr21 1871009 1871267 -33036303 + L1PA4 LINE L1 5878 6139 -16 270 0 0 0 chr21 1871267 1871297 -33036273 + (TA)n Simple_repeat Simple_repeat 1 30 0 2009 248 44 38 chr21 1871297 1871582 -33035988 - L1MB7 LINE L1 -3759 2885 2589 555 240 53 38 chr21 1871666 1872044 -33035526 - L1MB7 LINE L1 -4190 2456 1984 549 247 25 12 chr21 1872058 1872220 -33035350 - L1MB7 LINE L1 -6377 165 2 2606 159 16 52 chr21 1872256 1872808 -33034762 + L1PA16 LINE L1 5635 6166 0 401 306 56 86 chr21 1873052 1873460 -33034110 - L1 LINE L1 -2138 4008 3613 31 26 0 0 chr21 1874339 1874377 -33033193 + AT_rich Low_complexity Low_complexity 1 38 0 612 172 0 0 chr21 1874377 1874476 -33033094 - AluJb SINE Alu -30 282 184 23 0 0 0 chr21 1874828 1874851 -33032719 + AT_rich Low_complexity Low_complexity 1 23 0 1240 224 57 33 chr21 1875996 1876327 -33031243 - MER2 DNA MER2_type 0 344 6 576 188 45 8 chr21 1876957 1877090 -33030480 - L1MD2 LINE L1 -425 5934 5797 647 180 8 39 chr21 1877244 1877372 -33030198 + MER63 DNA MER1_type 1 750 -312 252 338 62 12 chr21 1877561 1877721 -33029849 + MLT1H LTR MaLR 382 549 0 514 285 69 12 chr21 1878696 1878894 -33028676 + LTR33 LTR ERVL 33 216 -305 233 292 56 11 chr21 1879311 1879400 -33028170 + L2 LINE L2 2282 2374 -940 426 32 0 32 chr21 1879551 1879613 -33027957 + L1PA13 LINE L1 6102 6161 -2 3917 184 71 8 chr21 1879613 1880482 -33027088 - L1M1 LINE L1 -1813 5752 4829 3957 237 50 41 chr21 1880485 1882392 -33025178 - L1M1 LINE L1 -2773 4792 2804 2070 306 15 30 chr21 1882577 1883298 -33024272 - L1M1 LINE L1 -6455 1111 402 242 390 9 0 chr21 1883816 1883921 -33023649 + L2 LINE L2 3204 3309 -4 251 200 29 57 chr21 1883966 1884036 -33023534 - L1ME3A LINE L1 -5 6165 6098 1532 259 55 28 chr21 1884049 1884521 -33023049 - MLT1D LTR MaLR 0 505 21 335 163 98 73 chr21 1884644 1884767 -33022803 - L1ME3A LINE L1 -183 5987 5862 1001 294 64 28 chr21 1884832 1885329 -33022241 - L1ME3A LINE L1 -401 5769 5255 746 284 100 54 chr21 1885361 1885809 -33021761 - L1ME3A LINE L1 -905 5241 4773 2445 166 0 16 chr21 1885828 1886273 -33021297 - L1PA15 LINE L1 -5 6160 5723 605 191 25 38 chr21 1886401 1886558 -33021012 - L1ME3A LINE L1 -1453 4693 4539 2825 156 14 23 chr21 1886672 1887186 -33020384 - L1MA4 LINE L1 -159 6141 5633 1828 62 0 0 chr21 1887187 1887412 -33020158 - AluY SINE Alu -73 238 14 3744 164 24 47 chr21 1887413 1887868 -33019702 + L1MA5A LINE L1 5515 5945 -352 1979 111 11 4 chr21 1887868 1888167 -33019403 + AluSx SINE Alu 1 301 0 3744 164 24 47 chr21 1888167 1888511 -33019059 + L1MA5A LINE L1 5945 6296 -1 340 270 88 0 chr21 1888518 1888666 -33018904 - Charlie4a DNA MER1_type -102 406 246 6056 173 3 0 chr21 1888670 1889740 -33017830 + L1P LINE L1 3865 4937 -1209 431 340 45 20 chr21 1890915 1891115 -33016455 - MIR SINE MIR -1 261 57 7570 27 0 0 chr21 1891416 1892428 -33015142 - L1PA3 LINE L1 -3 6152 5141 17525 34 7 1 chr21 1892429 1894582 -33012988 + L1P LINE L1 2932 5098 -1048 23 0 0 0 chr21 1897889 1897912 -33009658 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr21 1898519 1898569 -33009001 + AT_rich Low_complexity Low_complexity 1 50 0 1593 176 6 35 chr21 1898824 1899143 -33008427 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr21 1899664 1899694 -33007876 + AT_rich Low_complexity Low_complexity 1 30 0 2049 97 3 52 chr21 1899823 1900131 -33007439 + AluSx SINE Alu 1 293 -19 2203 126 0 0 chr21 1900266 1900568 -33007002 + AluSg SINE Alu 1 302 -8 23 0 0 0 chr21 1901193 1901216 -33006354 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr21 1901981 1902005 -33005565 + AT_rich Low_complexity Low_complexity 1 24 0 1439 183 121 0 chr21 1902465 1902771 -33004799 + MER2 DNA MER2_type 2 344 0 25 51 0 0 chr21 1902916 1902955 -33004615 + AT_rich Low_complexity Low_complexity 1 39 0 57 79 0 0 chr21 1903216 1903343 -33004227 + AT_rich Low_complexity Low_complexity 1 127 0 1431 164 75 19 chr21 1903700 1904125 -33003445 - L1MA4A LINE L1 -23 6280 5771 2639 174 22 8 chr21 1904486 1905369 -33002201 - L1MA4A LINE L1 -556 5747 4853 275 157 0 0 chr21 1905505 1905556 -33002014 + MLT1D LTR MaLR 57 107 -398 12825 85 5 1 chr21 1905576 1908174 -32999396 + L1PA7 LINE L1 3542 6151 -3 843 211 57 14 chr21 1908180 1908389 -32999181 + MER96B DNA MER1_type? 177 394 -23 23 0 0 0 chr21 1908629 1908652 -32998918 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chr21 1908669 1908704 -32998866 + AT_rich Low_complexity Low_complexity 1 35 0 206 367 0 0 chr21 1908827 1908936 -32998634 + A-rich Low_complexity Low_complexity 1 109 0 3043 130 11 6 chr21 1909025 1909495 -32998075 + MER84 LTR ERVI 36 507 0 1042 99 0 19 chr21 1910009 1910170 -32997400 + L1P4 LINE L1 5333 5490 -671 2301 57 3 41 chr21 1910170 1910485 -32997085 + AluY SINE Alu 1 303 -8 826 276 90 33 chr21 1910650 1911049 -32996521 - L1M4 LINE L1 -1822 4324 3903 906 111 90 0 chr21 1911049 1911074 -32996496 - AluY SINE Alu -154 157 136 482 0 0 17 chr21 1911074 1911133 -32996437 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 906 111 90 0 chr21 1911133 1911251 -32996319 - AluY SINE Alu -175 136 1 381 22 0 0 chr21 1912419 1912465 -32995105 + (CA)n Simple_repeat Simple_repeat 1 46 0 180 77 0 0 chr21 1912620 1912646 -32994924 + (A)n Simple_repeat Simple_repeat 1 26 0 2219 128 0 10 chr21 1912648 1912961 -32994609 + AluSx SINE Alu 1 310 -2 373 92 231 0 chr21 1915062 1915127 -32992443 + MADE1 DNA Mariner 1 80 0 587 266 59 25 chr21 1916532 1916735 -32990835 - MIR SINE MIR 0 262 53 764 221 23 9 chr21 1916860 1917077 -32990493 + L1MC3 LINE L1 7566 7785 0 2251 105 3 0 chr21 1917087 1917382 -32990188 + AluY SINE Alu 1 296 -15 1958 69 0 8 chr21 1917918 1918178 -32989392 + AluY SINE Alu 54 311 0 266 0 29 0 chr21 1918455 1918489 -32989081 + (CA)n Simple_repeat Simple_repeat 2 36 0 2546 61 0 3 chr21 1918999 1919311 -32988259 + AluY SINE Alu 1 311 0 234 280 0 0 chr21 1919482 1919532 -32988038 - MER58 DNA MER1_type -285 56 7 227 189 108 40 chr21 1919953 1920027 -32987543 - MLT1H LTR MaLR 0 549 471 193 242 109 70 chr21 1920491 1920619 -32986951 + MIR SINE MIR 120 252 -10 2853 277 37 31 chr21 1921126 1921551 -32986019 + L1M4 LINE L1 2252 2673 -3473 2029 110 32 36 chr21 1921551 1921678 -32985892 + AluSx SINE Alu 1 127 -185 2409 88 13 0 chr21 1921678 1921984 -32985586 + AluSp SINE Alu 1 310 -3 2029 110 32 36 chr21 1921984 1922165 -32985405 + AluSx SINE Alu 127 308 -4 2853 277 37 31 chr21 1922165 1922393 -32985177 + L1M4 LINE L1 2673 2898 -3248 2922 104 15 11 chr21 1922393 1922854 -32984716 - L1PA10 LINE L1 0 6168 5706 2853 277 37 31 chr21 1922854 1923760 -32983810 + L1M4 LINE L1 2898 3821 -2325 273 172 0 0 chr21 1923874 1923938 -32983632 + CT-rich Low_complexity Low_complexity 1 64 0 2066 73 51 0 chr21 1923938 1924212 -32983358 - AluY SINE Alu -23 288 1 227 190 50 30 chr21 1925054 1925154 -32982416 + (CACG)n Simple_repeat Simple_repeat 2 103 0 1852 160 3 3 chr21 1927102 1927395 -32980175 - AluSg1 SINE Alu -15 294 2 2046 118 7 4 chr21 1927569 1927883 -32979687 + AluSg SINE Alu 1 315 0 2531 114 13 8 chr21 1929077 1929470 -32978100 + L1PA12 LINE L1 5774 6168 0 515 266 0 27 chr21 1929792 1929976 -32977594 - MER104 DNA MER2_type -1 179 1 226 291 14 51 chr21 1930169 1930308 -32977262 - MIR3 SINE MIR -38 170 20 297 0 0 0 chr21 1931518 1931551 -32976019 + (TG)n Simple_repeat Simple_repeat 2 34 0 752 169 0 0 chr21 1932195 1932313 -32975257 + FLAM_A SINE Alu 1 118 -15 560 182 0 34 chr21 1932487 1932746 -32974824 - AluJb SINE Alu -11 301 1 189 207 121 17 chr21 1933366 1933424 -32974146 - L2 LINE L2 -50 3263 3200 24 32 0 0 chr21 1933893 1933924 -32973646 + AT_rich Low_complexity Low_complexity 1 31 0 2657 16 0 0 chr21 1934506 1934811 -32972759 + L1PA2 LINE L1 5850 6154 -1 573 189 9 9 chr21 1936956 1937062 -32970508 + U6 snRNA snRNA 1 106 -1 3021 175 8 8 chr21 1938286 1938813 -32968757 - MER1A DNA MER1_type 0 527 1 300 192 0 0 chr21 1939042 1939094 -32968476 - MER91B DNA MER1_type -60 130 79 24 32 0 0 chr21 1939571 1939602 -32967968 + AT_rich Low_complexity Low_complexity 1 31 0 187 324 28 0 chr21 1940476 1940547 -32967023 - L2 LINE L2 -565 2749 2677 859 224 47 47 chr21 1940552 1940766 -32966804 - MER58A DNA MER1_type -3 221 8 2083 153 7 0 chr21 1942544 1942851 -32964719 + AluSc SINE Alu 1 309 0 1346 192 130 55 chr21 1942962 1943454 -32964116 - LTR61 LTR ERV1 0 595 1 23 33 0 0 chr21 1943838 1943868 -32963702 + AT_rich Low_complexity Low_complexity 1 30 0 29 60 0 0 chr21 1943948 1943998 -32963572 + AT_rich Low_complexity Low_complexity 1 50 0 54 49 0 0 chr21 1945041 1945123 -32962447 + AT_rich Low_complexity Low_complexity 1 82 0 180 355 9 45 chr21 1945535 1945645 -32961925 + MIR3 SINE MIR 90 195 -13 229 252 99 86 chr21 1946588 1946711 -32960859 + L1ME LINE L1 5387 5514 -607 2057 147 6 11 chr21 1946711 1947058 -32960512 - L1PA15 LINE L1 0 6165 5821 229 252 99 86 chr21 1947058 1947085 -32960485 + L1ME LINE L1 5514 5539 -582 355 200 0 0 chr21 1947669 1947734 -32959836 - MER58A DNA MER1_type 0 224 160 886 201 25 0 chr21 1947738 1947897 -32959673 - AluJb SINE Alu -18 294 132 482 198 11 0 chr21 1947917 1948008 -32959562 - MER58A DNA MER1_type -15 92 1 2513 281 105 28 chr21 1948609 1948981 -32958589 + L2 LINE L2 1777 2119 -1194 2167 133 0 0 chr21 1948981 1949282 -32958288 - AluSx SINE Alu -11 301 1 2513 281 105 28 chr21 1949282 1950041 -32957529 + L2 LINE L2 2119 3040 -273 266 352 115 39 chr21 1950399 1950581 -32956989 + L2 LINE L2 3076 3271 -1 22 0 0 0 chr21 1950715 1950737 -32956833 + AT_rich Low_complexity Low_complexity 1 22 0 1928 156 3 0 chr21 1950843 1951138 -32956432 - AluSx SINE Alu -16 296 1 23 0 0 0 chr21 1951143 1951166 -32956404 + AT_rich Low_complexity Low_complexity 1 23 0 1549 148 72 30 chr21 1952052 1952383 -32955187 + THE1C LTR MaLR 5 349 -26 2597 172 35 7 chr21 1952395 1953016 -32954554 - L1P5 LINE L1 -378 5776 5126 207 0 0 0 chr21 1953016 1953039 -32954531 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2597 172 35 7 chr21 1953039 1953100 -32954470 - L1P5 LINE L1 -1028 5126 5068 3453 209 27 11 chr21 1953100 1953987 -32953583 - L1 LINE L1 -1121 5025 4125 3067 143 24 10 chr21 1954227 1954731 -32952839 + MER1A DNA MER1_type 1 511 -18 204 125 0 0 chr21 1955121 1955153 -32952417 + (TG)n Simple_repeat Simple_repeat 2 33 0 180 0 0 0 chr21 1955161 1955181 -32952389 + (CA)n Simple_repeat Simple_repeat 2 21 0 327 25 0 0 chr21 1955903 1955943 -32951627 + (TG)n Simple_repeat Simple_repeat 2 41 0 879 178 0 0 chr21 1955948 1956094 -32951476 - AluSg/x SINE Alu -31 279 134 7754 184 6 1 chr21 1957284 1958645 -32948925 + L1PA12 LINE L1 637 2004 -5577 460 143 0 0 chr21 1958830 1958900 -32948670 - L1PA12 LINE L1 -6251 1330 1261 282 350 144 0 chr21 1959241 1959401 -32948169 + L1PA13 LINE L1 877 1059 -5728 3108 204 0 15 chr21 1959587 1960186 -32947384 + L1PA13 LINE L1 1395 1984 -4803 664 205 0 0 chr21 1960229 1960351 -32947219 - L1PA13 LINE L1 -6177 610 489 4608 176 23 8 chr21 1960343 1961358 -32946212 + L1PA13 LINE L1 1994 3039 -3758 2477 87 0 0 chr21 1961358 1961668 -32945902 + AluY SINE Alu 1 310 -1 4608 176 23 8 chr21 1961668 1961683 -32945887 + L1PA13 LINE L1 3039 3052 -3745 2195 191 134 54 chr21 1961684 1962632 -32944938 + MER4-int LTR ERV1 29 1097 -5501 6530 90 6 6 chr21 1962640 1963711 -32943859 - L1PA7 LINE L1 -3 6151 5051 3412 113 8 4 chr21 1963737 1964250 -32943320 + L1P LINE L1 4555 5069 -1077 2657 142 2 2 chr21 1968101 1968538 -32939032 - L1P LINE L1 -3745 2401 1965 1296 219 13 36 chr21 1968708 1969010 -32938560 - AluJo SINE Alu -16 296 2 1442 201 12 5 chr21 1970014 1970483 -32937087 + L1P4 LINE L1 5027 5496 -670 28 0 0 0 chr21 1970483 1970511 -32937059 + AT_rich Low_complexity Low_complexity 1 28 0 2106 114 0 16 chr21 1970621 1970927 -32936643 + AluSg SINE Alu 1 301 -9 499 314 72 34 chr21 1971117 1971672 -32935898 - L1MEc LINE L1 -4451 2671 2096 1063 269 86 44 chr21 1972017 1972564 -32935006 - L1MEc LINE L1 -4890 1533 964 228 67 0 0 chr21 1972573 1972603 -32934967 + (TG)n Simple_repeat Simple_repeat 1 30 0 235 194 0 0 chr21 1972788 1972824 -32934746 - L1MEc LINE L1 -5661 762 727 272 299 195 6 chr21 1974050 1974224 -32933346 - MIR SINE MIR 0 262 56 818 37 0 9 chr21 1974418 1974525 -32933045 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1433 176 3 84 chr21 1974528 1974851 -32932719 - AluJb SINE Alu -15 297 1 2314 65 58 0 chr21 1975741 1976035 -32931535 - AluSp SINE Alu -2 311 1 2215 110 7 0 chr21 1976273 1976563 -32931007 - AluSq SINE Alu -21 292 1 424 263 28 68 chr21 1976694 1976910 -32930660 - MIR SINE MIR -53 209 1 2093 147 0 0 chr21 1977823 1978135 -32929435 - AluSx SINE Alu 0 312 1 808 103 0 0 chr21 1978490 1978597 -32928973 + AluSc SINE Alu 1 107 -202 2163 203 40 4 chr21 1978607 1979084 -32928486 - L1MB3 LINE L1 -44 6139 5646 750 225 78 68 chr21 1979669 1980153 -32927417 + L1M4 LINE L1 4400 4935 -1211 285 283 6 17 chr21 1982324 1982504 -32925066 + (CA)n Simple_repeat Simple_repeat 2 179 0 229 256 48 12 chr21 1982546 1982714 -32924856 + (CA)n Simple_repeat Simple_repeat 2 175 0 2232 71 0 3 chr21 1982815 1983109 -32924461 - AluY SINE Alu -18 293 1 3279 48 0 4 chr21 1984290 1984748 -32922822 + L1P2 LINE L1 4984 5438 -716 6793 143 29 12 chr21 1986237 1987807 -32919763 - L1MA1 LINE L1 -9 6293 4687 2048 142 3 0 chr21 1987957 1988253 -32919317 + AluSq SINE Alu 1 297 -16 1270 238 75 64 chr21 1988560 1989157 -32918413 - L1ME1 LINE L1 -3 6163 5560 315 0 0 0 chr21 1990335 1990374 -32917196 + HY3 scRNA scRNA 62 100 -1 27 0 0 0 chr21 1990374 1990401 -32917169 + AT_rich Low_complexity Low_complexity 1 27 0 2009 196 61 28 chr21 1990931 1991436 -32916134 - L1MA7 LINE L1 -1 6290 5769 2581 208 60 28 chr21 1991440 1992088 -32915482 - L1MB8 LINE L1 -2 6176 5508 4586 190 37 16 chr21 1992082 1993603 -32913967 - L1MA7 LINE L1 -510 5781 4229 21 0 0 0 chr21 1994912 1994933 -32912637 + AT_rich Low_complexity Low_complexity 1 21 0 246 156 0 0 chr21 1996059 1996104 -32911466 + A-rich Low_complexity Low_complexity 1 45 0 29 47 0 0 chr21 1996809 1996852 -32910718 + AT_rich Low_complexity Low_complexity 1 43 0 474 230 0 9 chr21 1996877 1996990 -32910580 - L1MA7 LINE L1 -1904 4242 4131 186 43 0 0 chr21 1998287 1998310 -32909260 + (TGGGGG)n Simple_repeat Simple_repeat 3 25 0 250 263 152 20 chr21 2000832 2000931 -32906639 - MIR SINE MIR -63 145 34 201 196 0 0 chr21 2001864 2001910 -32905660 + (CA)n Simple_repeat Simple_repeat 2 47 0 215 375 92 38 chr21 2002697 2002881 -32904689 - L2 LINE L2 -29 3243 3050 451 255 49 33 chr21 2002975 2003159 -32904411 + MLT1L LTR MaLR 402 588 -27 1414 224 4 4 chr21 2003786 2004063 -32903507 - AluJb SINE Alu -35 277 1 25 31 0 0 chr21 2004144 2004176 -32903394 + AT_rich Low_complexity Low_complexity 1 32 0 1967 152 121 21 chr21 2004764 2005153 -32902417 + MSTA LTR MaLR 1 428 0 1732 178 3 29 chr21 2005482 2005791 -32901779 + AluJb SINE Alu 6 306 -6 216 0 0 0 chr21 2006405 2006429 -32901141 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1038 199 5 0 chr21 2006547 2006733 -32900837 - MER3 DNA MER1_type 0 209 23 22 0 0 0 chr21 2007507 2007529 -32900041 + AT_rich Low_complexity Low_complexity 1 22 0 501 282 87 46 chr21 2007648 2007874 -32899696 + L1ME4a LINE L1 5535 5779 -342 1691 185 3 3 chr21 2007874 2008161 -32899409 - AluSx SINE Alu -24 288 2 501 282 87 46 chr21 2008161 2008257 -32899313 + L1ME4a LINE L1 5779 5870 -251 228 100 0 0 chr21 2008529 2008569 -32899001 + (CA)n Simple_repeat Simple_repeat 1 40 0 358 246 113 56 chr21 2008585 2008727 -32898843 + L1ME4a LINE L1 5969 6118 -3 1487 224 10 3 chr21 2008769 2009068 -32898502 + AluJo SINE Alu 1 301 -11 1288 178 91 8 chr21 2009152 2009405 -32898165 - LTR4 LTR ERV1 -2 594 321 1306 156 49 17 chr21 2009440 2009742 -32897828 - LTR4 LTR ERV1 -239 357 26 243 152 0 0 chr21 2010870 2010916 -32896654 + (TGAA)n Simple_repeat Simple_repeat 1 46 0 608 246 66 6 chr21 2011011 2011178 -32896392 + MIR SINE MIR 20 196 -66 506 217 56 35 chr21 2011714 2011857 -32895713 + MLT1D LTR MaLR 48 193 -312 1245 196 0 48 chr21 2011859 2012130 -32895440 + AluJb SINE Alu 5 262 -50 1360 214 38 69 chr21 2016062 2016429 -32891141 + MER67C LTR ERV1 22 403 -234 33 43 0 0 chr21 2016867 2016914 -32890656 + AT_rich Low_complexity Low_complexity 1 47 0 232 318 47 0 chr21 2017038 2017145 -32890425 - MIR SINE MIR -71 191 80 408 257 0 19 chr21 2017293 2017398 -32890172 + L1M3e LINE L1 466 568 -6921 9055 240 35 17 chr21 2017957 2020813 -32886757 + L1M3e LINE L1 2007 4810 -2755 1567 188 14 10 chr21 2020813 2021105 -32886465 + AluJo SINE Alu 1 293 -19 792 57 48 0 chr21 2021113 2021237 -32886333 + GA-rich Low_complexity Low_complexity 3 132 0 9055 240 35 17 chr21 2021237 2022368 -32885202 + L1M3e LINE L1 4816 6071 -1494 429 293 11 6 chr21 2024650 2024824 -32882746 + (CA)n Simple_repeat Simple_repeat 1 175 0 269 325 0 0 chr21 2024851 2024965 -32882605 + (CA)n Simple_repeat Simple_repeat 1 114 0 1095 128 5 32 chr21 2025981 2026168 -32881402 + MER49 LTR ERV1 715 896 -27 22 56 0 0 chr21 2027759 2027795 -32879775 + AT_rich Low_complexity Low_complexity 1 36 0 38 39 0 0 chr21 2028555 2028607 -32878963 + AT_rich Low_complexity Low_complexity 1 52 0 2180 111 6 22 chr21 2028760 2029075 -32878495 - AluSp SINE Alu -1 312 3 684 296 47 18 chr21 2029339 2029677 -32877893 - L1MCa LINE L1 -3614 2812 2465 22 56 0 0 chr21 2029837 2029873 -32877697 + AT_rich Low_complexity Low_complexity 1 36 0 252 326 23 32 chr21 2029995 2030213 -32877357 - L1MCa LINE L1 -4503 1923 1708 21 0 0 0 chr21 2030884 2030905 -32876665 + AT_rich Low_complexity Low_complexity 1 21 0 977 79 0 16 chr21 2035914 2036031 -32871539 + AluY SINE Alu 1 117 -194 215 31 31 0 chr21 2036031 2036063 -32871507 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 28 79 0 0 chr21 2036242 2036305 -32871265 + AT_rich Low_complexity Low_complexity 1 63 0 355 127 63 32 chr21 2038435 2038518 -32869052 + AluJ/FRAM SINE Alu 229 302 0 2137 120 0 3 chr21 2038520 2038820 -32868750 + AluSp SINE Alu 1 299 -14 1736 166 34 7 chr21 2039132 2039427 -32868143 - AluJb SINE Alu -9 303 1 212 0 36 0 chr21 2039511 2039539 -32868031 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 286 227 80 0 chr21 2039581 2039656 -32867914 + MIR SINE MIR 112 192 -70 2225 103 3 0 chr21 2039686 2039988 -32867582 - AluSx SINE Alu -9 303 1 403 254 0 57 chr21 2040004 2040126 -32867444 - L2 LINE L2 -26 3287 3173 2071 134 10 3 chr21 2040425 2040732 -32866838 + AluJb SINE Alu 4 312 0 215 155 48 0 chr21 2042397 2042481 -32865089 + (TA)n Simple_repeat Simple_repeat 1 88 0 260 291 14 7 chr21 2042494 2042642 -32864928 + (TA)n Simple_repeat Simple_repeat 1 149 0 1209 130 16 0 chr21 2042674 2042858 -32864712 - AluSp SINE Alu -10 303 117 1232 251 49 44 chr21 2042858 2043452 -32864118 - L1M4 LINE L1 -921 5225 4629 28789 113 19 9 chr21 2043567 2047847 -32859723 + L1PA6 LINE L1 13 4337 -1809 4433 81 35 23 chr21 2047848 2048955 -32858615 + MER11A LTR ERVK 1 1266 0 7852 66 4 8 chr21 2048956 2050776 -32856794 + L1PA6 LINE L1 4334 6152 -2 2255 111 0 3 chr21 2051189 2051486 -32856084 - AluSg SINE Alu -14 296 1 558 307 18 14 chr21 2051631 2051849 -32855721 - L2 LINE L2 -8 3305 3087 1402 334 31 34 chr21 2051929 2052732 -32854838 - L2 LINE L2 -357 2957 2157 604 164 0 49 chr21 2053120 2053242 -32854328 - AluJb SINE Alu -195 117 2 5064 12 0 7 chr21 2053467 2054039 -32853531 - L1HS LINE L1 -1 6154 5587 246 62 0 0 chr21 2054039 2054071 -32853499 + (A)n Simple_repeat Simple_repeat 1 32 0 520 95 0 12 chr21 2054269 2054353 -32853217 - L1PB4 LINE L1 -2 6154 6072 592 175 38 60 chr21 2054416 2054599 -32852971 - L1MC5 LINE L1 -395 7566 7388 350 127 0 42 chr21 2054632 2054703 -32852867 + L1MC5 LINE L1 7605 7672 -289 4778 186 30 28 chr21 2055393 2056282 -32851288 + MER54A LTR ERVL 10 900 -1 25 99 0 0 chr21 2057194 2057275 -32850295 + AT_rich Low_complexity Low_complexity 1 81 0 21 0 0 0 chr21 2058571 2058592 -32848978 + AT_rich Low_complexity Low_complexity 1 21 0 249 258 30 0 chr21 2058592 2058658 -32848912 + MIR SINE MIR 64 131 -131 459 242 100 0 chr21 2059648 2059768 -32847802 + LTR16A1 LTR ERVL 168 299 -158 1711 194 148 17 chr21 2060081 2060494 -32847076 + MLT1C LTR MaLR 1 467 0 2118 100 4 0 chr21 2060745 2061044 -32846526 + AluSp SINE Alu 11 310 0 815 176 0 0 chr21 2061820 2061945 -32845625 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr21 2061945 2061973 -32845597 + AT_rich Low_complexity Low_complexity 1 28 0 2178 123 0 0 chr21 2062298 2062591 -32844979 + AluSg SINE Alu 1 293 -17 1726 184 59 6 chr21 2062705 2063042 -32844528 + MLT1A1 LTR MaLR 11 365 0 1885 117 8 8 chr21 2063421 2063686 -32843884 + AluSq SINE Alu 46 310 -3 30 0 0 0 chr21 2063975 2064005 -32843565 + AT_rich Low_complexity Low_complexity 1 30 0 439 257 9 0 chr21 2064277 2064390 -32843180 + LTR43 LTR ERV1 183 296 -306 332 338 55 0 chr21 2064646 2064791 -32842779 - LTR1B LTR ERV1 0 826 674 2011 206 127 35 chr21 2064767 2065475 -32842095 - LTR1B LTR ERV1 -98 922 1 233 202 101 67 chr21 2065710 2065799 -32841771 - MARNA DNA Mariner -480 106 15 878 227 99 6 chr21 2066644 2066816 -32840754 + MER5A DNA MER1_type 1 188 -1 467 232 0 24 chr21 2067556 2067692 -32839878 + MER5B DNA MER1_type 1 174 -4 519 122 0 0 chr21 2068290 2068364 -32839206 - MADE1 DNA Mariner -5 75 2 239 308 0 0 chr21 2068402 2068454 -32839116 + L2 LINE L2 3210 3261 -11 22 0 0 0 chr21 2068963 2068985 -32838585 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr21 2069365 2069409 -32838161 + AT_rich Low_complexity Low_complexity 1 44 0 1857 161 3 3 chr21 2070876 2071167 -32836403 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr21 2072150 2072171 -32835399 + AT_rich Low_complexity Low_complexity 1 21 0 2144 113 3 10 chr21 2072172 2072473 -32835097 + AluSc SINE Alu 1 299 -10 28 0 0 0 chr21 2072611 2072639 -32834931 + AT_rich Low_complexity Low_complexity 1 28 0 1935 157 3 7 chr21 2073095 2073388 -32834182 - AluSx SINE Alu -20 292 1 402 252 61 28 chr21 2073407 2073693 -32833877 - L1ME3A LINE L1 -180 5990 5657 551 302 17 6 chr21 2074306 2074478 -32833092 - L1MC4 LINE L1 -145 7897 7724 293 237 0 0 chr21 2075135 2075194 -32832376 - L1MC5 LINE L1 -1199 6762 6704 407 221 81 0 chr21 2075195 2075281 -32832289 - L1MC4a LINE L1 -1112 6696 6604 199 290 58 77 chr21 2075832 2076039 -32831531 - L2 LINE L2 -1857 1457 1255 658 245 19 13 chr21 2076104 2076263 -32831307 - MER5B DNA MER1_type -18 160 1 518 115 0 13 chr21 2076564 2076642 -32830928 - MADE1 DNA Mariner -3 77 1 392 295 10 90 chr21 2077139 2077339 -32830231 - MIR3 SINE MIR -5 203 20 882 179 125 76 chr21 2085417 2085641 -32821929 + MER46A DNA MER2_type 2 236 0 1858 135 13 30 chr21 2085681 2085984 -32821586 + AluSg SINE Alu 1 298 -12 914 221 39 0 chr21 2087686 2087867 -32819703 + MER5A DNA MER1_type 2 189 0 1673 204 6 3 chr21 2091538 2091857 -32815713 + L1MC2 LINE L1 6024 6343 -1 2113 286 58 43 chr21 2092030 2092133 -32815437 - L2 LINE L2 -784 2530 2430 634 264 74 0 chr21 2092133 2092296 -32815274 + MER96 DNA MER1_type 1 175 0 2113 286 58 43 chr21 2092296 2093001 -32814569 - L2 LINE L2 -884 2430 1710 21 71 0 0 chr21 2093705 2093747 -32813823 + AT_rich Low_complexity Low_complexity 1 42 0 2191 128 0 0 chr21 2095292 2095582 -32811988 - AluSg SINE Alu -20 290 1 1056 157 65 11 chr21 2095791 2095976 -32811594 + L1PA16 LINE L1 5963 6157 -9 23 0 0 0 chr21 2096529 2096552 -32811018 + AT_rich Low_complexity Low_complexity 1 23 0 236 309 161 20 chr21 2097012 2097161 -32810409 - MIR3 SINE MIR -23 185 16 184 358 58 50 chr21 2097151 2097271 -32810299 - L2 LINE L2 -1 3271 3151 21 0 0 0 chr21 2100457 2100478 -32807092 + AT_rich Low_complexity Low_complexity 1 21 0 333 0 0 0 chr21 2100549 2100586 -32806984 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 2314 96 0 0 chr21 2100586 2100879 -32806691 - L1PA7 LINE L1 -16 6138 5846 296 302 73 10 chr21 2101157 2101253 -32806317 + L2 LINE L2 3151 3252 -20 24 53 0 0 chr21 2101433 2101471 -32806099 + AT_rich Low_complexity Low_complexity 1 38 0 1230 223 82 62 chr21 2101746 2101784 -32805786 + MLT1C LTR MaLR 6 42 -425 1961 177 3 62 chr21 2101784 2102123 -32805447 - MLT1A1 LTR MaLR 0 365 50 2202 98 35 0 chr21 2102123 2102410 -32805160 + AluSx SINE Alu 1 297 -15 1961 177 3 62 chr21 2102410 2102454 -32805116 - MLT1A1 LTR MaLR -315 50 5 1230 223 82 62 chr21 2102454 2102868 -32804702 + MLT1C LTR MaLR 42 467 0 29 28 0 0 chr21 2103157 2103193 -32804377 + AT_rich Low_complexity Low_complexity 1 36 0 2637 146 82 11 chr21 2103976 2104343 -32803227 - L1MB2 LINE L1 -2 6169 5759 261 0 0 0 chr21 2104343 2104372 -32803198 + (TA)n Simple_repeat Simple_repeat 1 29 0 2637 146 82 11 chr21 2104372 2104482 -32803088 - L1MB2 LINE L1 -412 5759 5658 1787 189 0 3 chr21 2104650 2104952 -32802618 + AluJo SINE Alu 1 301 -11 1192 55 6 22 chr21 2104952 2104970 -32802600 + (GAAA)n Simple_repeat Simple_repeat 1 196 0 1192 55 6 22 chr21 2104970 2105152 -32802418 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 1354 181 45 84 chr21 2105484 2105843 -32801727 - MLT1A1 LTR MaLR 0 365 21 2314 65 58 0 chr21 2106089 2106383 -32801187 - AluSp SINE Alu -2 311 1 2215 110 7 0 chr21 2106621 2106911 -32800659 - AluSq SINE Alu -21 292 1 424 263 28 68 chr21 2107042 2107258 -32800312 - MIR SINE MIR -53 209 1 831 216 51 31 chr21 2107984 2108239 -32799331 - LTR37B LTR ERV1 0 468 209 393 295 52 52 chr21 2108377 2108570 -32799000 - MIR SINE MIR -59 203 11 1651 93 0 0 chr21 2108803 2109018 -32798552 - L1PA6 LINE L1 0 6154 5940 620 216 33 39 chr21 2109455 2109564 -32798006 + MIR SINE MIR 14 123 -139 4640 116 32 32 chr21 2109564 2110255 -32797315 - LTR8 LTR ERV1 0 691 1 620 216 33 39 chr21 2110255 2110298 -32797272 + MIR SINE MIR 123 165 -97 1817 144 22 22 chr21 2112523 2112835 -32794735 + AluJb SINE Alu 1 312 0 211 333 25 0 chr21 2112843 2112924 -32794646 + MIR SINE MIR 160 242 -20 225 0 0 0 chr21 2112962 2112987 -32794583 + (T)n Simple_repeat Simple_repeat 1 25 0 315 221 35 62 chr21 2113127 2113240 -32794330 - MLT1J1 LTR MaLR -15 431 322 967 189 15 48 chr21 2113250 2113399 -32794171 - MLT1B LTR MaLR 0 390 248 4653 151 67 89 chr21 2113399 2114495 -32793075 - MER11C LTR ERVK 0 1071 1 967 189 15 48 chr21 2114495 2114551 -32793019 - MLT1B LTR MaLR -142 248 192 417 214 137 0 chr21 2114771 2114888 -32792682 - MLT1J2 LTR MaLR -305 145 13 233 330 58 75 chr21 2116870 2117058 -32790512 + MIR SINE MIR 25 209 -53 2070 190 11 6 chr21 2118051 2118414 -32789156 - MLT1A1 LTR MaLR 0 365 1 212 175 0 0 chr21 2120106 2120146 -32787424 + A-rich Low_complexity Low_complexity 2 41 0 184 307 45 23 chr21 2120927 2121015 -32786555 + MIR SINE MIR 58 147 -115 891 124 51 23 chr21 2121235 2121543 -32786027 + LTR7 LTR ERV1 1 450 0 1454 206 57 29 chr21 2122224 2122574 -32784996 + MER45B DNA AcHobo 445 804 -236 238 292 88 0 chr21 2122601 2122714 -32784856 + MIR SINE MIR 77 199 -63 358 232 0 0 chr21 2123861 2123930 -32783640 - L2 LINE L2 -3 3310 3242 333 352 31 0 chr21 2124034 2124162 -32783408 - MIR3 SINE MIR -42 166 35 275 71 24 0 chr21 2124560 2124602 -32782968 + (TC)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr21 2125704 2125727 -32781843 + AT_rich Low_complexity Low_complexity 1 23 0 343 299 70 5 chr21 2126140 2126334 -32781236 + MIR SINE MIR 19 228 -34 2522 51 0 0 chr21 2126871 2127163 -32780407 - AluY SINE Alu -19 292 1 1509 46 20 20 chr21 2127228 2127425 -32780145 - BC200 scRNA scRNA -3 197 1 552 95 0 0 chr21 2127833 2127917 -32779653 + (GA)n Simple_repeat Simple_repeat 1 84 0 459 0 0 0 chr21 2127917 2127968 -32779602 + (TG)n Simple_repeat Simple_repeat 1 51 0 3849 158 14 33 chr21 2129219 2129911 -32777659 - L1MA5 LINE L1 0 6300 5622 25 0 0 0 chr21 2131248 2131273 -32776297 + AT_rich Low_complexity Low_complexity 1 25 0 355 284 57 51 chr21 2132269 2132445 -32775125 + MIR3 SINE MIR 16 192 -16 720 230 36 12 chr21 2132465 2132630 -32774940 - MER45A DNA AcHobo 0 178 10 2280 108 0 3 chr21 2133771 2134076 -32773494 + AluSx SINE Alu 2 305 -7 1852 131 31 17 chr21 2134106 2134396 -32773174 - AluSq SINE Alu -19 294 1 629 247 14 0 chr21 2137185 2137331 -32770239 + MIR SINE MIR 113 260 -2 7904 71 2 2 chr21 2137545 2138514 -32769056 + LTR5 LTR ERVK 1 969 0 7595 33 1 0 chr21 2140128 2141013 -32766557 - L1PA3 LINE L1 0 6155 5270 2243 94 0 10 chr21 2143697 2143994 -32763576 - AluSg1 SINE Alu -15 294 1 324 127 0 0 chr21 2144115 2144170 -32763400 + (TG)n Simple_repeat Simple_repeat 1 55 0 1953 145 13 7 chr21 2145988 2146298 -32761272 - AluSx SINE Alu 0 312 1 26 0 0 0 chr21 2146525 2146551 -32761019 + AT_rich Low_complexity Low_complexity 1 26 0 582 279 53 0 chr21 2146551 2146738 -32760832 + MER67D LTR ERV1 225 400 -114 343 208 15 0 chr21 2147761 2147891 -32759679 + (CA)n Simple_repeat Simple_repeat 2 133 0 31 68 0 0 chr21 2150102 2150161 -32757409 + AT_rich Low_complexity Low_complexity 1 59 0 23 78 0 0 chr21 2150728 2150779 -32756791 + AT_rich Low_complexity Low_complexity 1 51 0 1357 206 11 28 chr21 2152362 2152649 -32754921 - AluJo SINE Alu -30 282 1 1393 161 62 46 chr21 2153398 2153700 -32753870 - MSTB LTR MaLR -3 423 117 985 152 168 0 chr21 2153700 2153801 -32753769 - MER30 DNA MER1_type 0 230 147 474 18 0 0 chr21 2153801 2153856 -32753714 + (TG)n Simple_repeat Simple_repeat 2 56 0 985 152 168 0 chr21 2153856 2153951 -32753619 - MER30 DNA MER1_type -83 147 1 827 130 16 0 chr21 2153951 2154073 -32753497 - MSTB LTR MaLR -302 124 1 352 321 72 45 chr21 2154098 2154363 -32753207 - L1ME LINE L1 -547 5623 5352 1464 272 35 5 chr21 2154730 2155127 -32752443 + MER70A LTR ERVL 15 423 -49 23 33 0 0 chr21 2155843 2155873 -32751697 + AT_rich Low_complexity Low_complexity 1 30 0 3162 134 24 2 chr21 2155880 2156386 -32751184 + L1PB1 LINE L1 5631 6147 -4 24 53 0 0 chr21 2158080 2158118 -32749452 + AT_rich Low_complexity Low_complexity 1 38 0 1239 200 45 41 chr21 2158118 2158408 -32749162 - AluJo SINE Alu -21 291 1 259 309 0 24 chr21 2159253 2159337 -32748233 - MIR SINE MIR -20 242 161 258 164 0 0 chr21 2159350 2159405 -32748165 + (CA)n Simple_repeat Simple_repeat 1 55 0 534 143 276 0 chr21 2159453 2159551 -32748019 + FLAM_C SINE Alu 2 126 -17 670 298 79 30 chr21 2159795 2160164 -32747406 - MLT1K LTR MaLR -2 586 200 915 207 90 9 chr21 2160745 2161134 -32746436 - LTR46 LTR ERV1 0 460 1 200 310 113 35 chr21 2161301 2161443 -32746127 - L2 LINE L2 -166 3147 2995 459 252 38 6 chr21 2162333 2162492 -32745078 + LTR33 LTR ERVL 295 458 -63 252 346 102 0 chr21 2162828 2162955 -32744615 + MIR SINE MIR 15 154 -108 389 330 0 0 chr21 2163188 2163306 -32744264 + MIR SINE MIR 23 140 -122 1026 254 26 6 chr21 2163429 2163740 -32743830 - LTR16C LTR ERVL -29 462 146 250 291 103 22 chr21 2164087 2164256 -32743314 - MIR SINE MIR -55 207 26 425 281 29 7 chr21 2169229 2169368 -32738202 - MSTA LTR MaLR -154 274 133 470 237 17 23 chr21 2169418 2169648 -32737922 + THE1-int LTR MaLR 907 1174 -406 230 250 18 0 chr21 2169650 2169706 -32737864 - MST-int LTR MaLR -616 1035 979 280 208 89 40 chr21 2169771 2169872 -32737698 - MSTA LTR MaLR -322 106 1 1049 208 96 20 chr21 2169872 2170165 -32737405 - MSTA-int LTR MaLR 0 1651 1337 324 203 54 14 chr21 2170190 2170264 -32737306 - MSTA LTR MaLR -257 171 95 397 208 21 10 chr21 2170341 2170437 -32737133 - MSTA LTR MaLR -331 97 1 5700 225 47 44 chr21 2170437 2172057 -32735513 - MSTA-int LTR MaLR 0 1651 28 389 204 31 10 chr21 2172054 2172152 -32735418 + THE1-int LTR MaLR 465 564 -1016 791 238 82 12 chr21 2172235 2172491 -32735079 - MSTA LTR MaLR -60 368 95 617 195 28 22 chr21 2172506 2172750 -32734820 + THE1-int LTR MaLR 907 1191 -389 256 214 18 0 chr21 2172738 2172794 -32734776 - THE1-int LTR MaLR -613 967 911 469 179 21 0 chr21 2172888 2172983 -32734587 - MSTA LTR MaLR -331 97 1 1387 202 3 40 chr21 2172983 2173330 -32734240 - MSTA-int LTR MaLR 0 1651 1318 294 226 32 0 chr21 2173337 2173399 -32734171 - MSTA LTR MaLR -269 159 96 391 243 19 0 chr21 2173470 2173573 -32733997 - MSTA LTR MaLR -323 105 1 5378 230 52 47 chr21 2173573 2175184 -32732386 - MSTB-int LTR MaLR 0 1651 34 297 275 37 9 chr21 2175188 2175297 -32732273 + THE1-int LTR MaLR 466 577 -1003 780 249 70 16 chr21 2175339 2175596 -32731974 - MSTB LTR MaLR -52 374 104 544 236 180 56 chr21 2175626 2175876 -32731694 + MST-int LTR MaLR 976 1256 -395 248 222 19 0 chr21 2175866 2175920 -32731650 - MST-int LTR MaLR -618 1033 979 3785 111 27 4 chr21 2175991 2176541 -32731029 + LTR6A LTR ERV1 1 563 -1 228 211 126 21 chr21 2176574 2176669 -32730901 - MSTB LTR MaLR -250 105 1 1187 211 39 45 chr21 2176669 2177005 -32730565 - MSTB-int LTR MaLR 0 1651 1318 353 235 10 0 chr21 2177154 2177252 -32730318 - MSTA LTR MaLR -329 99 1 515 198 9 0 chr21 2177252 2177368 -32730202 - MSTA-int LTR MaLR 0 1651 1535 3642 241 36 28 chr21 2177364 2178678 -32728892 - MSTA-int LTR MaLR -262 1389 26 438 230 166 7 chr21 2178674 2178813 -32728757 + MST-int LTR MaLR 507 667 -984 968 231 52 8 chr21 2178841 2179109 -32728461 - MSTA LTR MaLR -52 376 97 424 235 20 0 chr21 2179131 2179233 -32728337 + MST-int LTR MaLR 976 1079 -572 345 272 48 34 chr21 2179226 2179373 -32728197 + THE1-int LTR MaLR 1043 1191 -389 280 196 18 0 chr21 2179361 2179417 -32728153 - THE1-int LTR MaLR -613 967 911 274 197 33 0 chr21 2179533 2179594 -32727976 - MSTA LTR MaLR -363 65 3 1172 213 40 43 chr21 2179596 2179924 -32727646 - MSTA-int LTR MaLR 0 1651 1325 270 245 113 9 chr21 2179924 2180030 -32727540 - MSTA LTR MaLR -252 176 60 436 227 21 0 chr21 2180079 2180176 -32727394 - MSTA LTR MaLR -329 99 1 3426 253 59 35 chr21 2180176 2181303 -32726267 - MSTA-int LTR MaLR 0 1580 427 742 230 5 0 chr21 2181338 2181529 -32726041 - MSTA-int LTR MaLR -1421 230 39 539 173 173 8 chr21 2181538 2181671 -32725899 + MST-int LTR MaLR 507 661 -990 846 239 59 43 chr21 2181697 2182002 -32725568 - MSTA LTR MaLR -43 385 76 499 249 219 26 chr21 2182007 2182240 -32725330 + MST-int LTR MaLR 976 1253 -398 268 193 18 0 chr21 2182231 2182288 -32725282 - MST-int LTR MaLR -616 1035 978 415 194 11 0 chr21 2182388 2182481 -32725089 - MSTA LTR MaLR -334 94 1 1179 208 16 38 chr21 2182481 2182799 -32724771 - MSTA-int LTR MaLR 0 1651 1341 251 213 41 107 chr21 2182805 2182927 -32724643 - MSTA LTR MaLR -257 171 58 238 213 96 43 chr21 2182952 2183046 -32724524 - MSTB2 LTR MaLR -345 112 14 515 189 27 0 chr21 2183048 2183159 -32724411 - MSTB2-int LTR MaLR 0 1651 1538 273 186 93 41 chr21 2183282 2183379 -32724191 - MSTB2 LTR MaLR -342 115 14 5599 240 51 21 chr21 2183381 2184959 -32722611 - MSTA-int LTR MaLR 0 1651 28 269 256 168 7 chr21 2184953 2185090 -32722480 + MST-int LTR MaLR 503 661 -990 897 245 57 11 chr21 2185126 2185391 -32722179 - MSTA LTR MaLR -54 374 98 324 313 10 0 chr21 2185419 2185518 -32722052 + MST-int LTR MaLR 976 1075 -576 371 232 42 35 chr21 2185516 2185658 -32721912 + THE1-int LTR MaLR 1045 1187 -393 512 146 21 10 chr21 2185791 2185887 -32721683 - MSTA LTR MaLR -331 97 1 1399 201 3 40 chr21 2185887 2186235 -32721335 - MSTA-int LTR MaLR 0 1651 1317 223 235 0 29 chr21 2186297 2186365 -32721205 + C-rich Low_complexity Low_complexity 5 70 0 390 232 10 0 chr21 2186381 2186480 -32721090 - MSTA LTR MaLR -328 100 1 364 158 26 0 chr21 2186480 2186556 -32721014 - MSTA-int LTR MaLR 0 1651 1574 306 177 0 32 chr21 2186558 2186620 -32720950 + MSTA LTR MaLR 317 376 -52 5213 230 50 36 chr21 2186693 2188228 -32719342 - MSTA-int LTR MaLR -68 1583 28 415 245 32 32 chr21 2188223 2188378 -32719192 + THE1-int LTR MaLR 463 617 -963 964 243 56 4 chr21 2188395 2188662 -32718908 - MSTA LTR MaLR -52 376 96 296 256 12 0 chr21 2188687 2188769 -32718801 + MST-int LTR MaLR 976 1058 -593 471 242 40 34 chr21 2188778 2188927 -32718643 + THE1-int LTR MaLR 1039 1188 -392 241 193 35 18 chr21 2188917 2188974 -32718596 - MSTA-int LTR MaLR -612 968 911 410 208 10 0 chr21 2189070 2189166 -32718404 - MSTA LTR MaLR -331 97 1 1283 230 3 38 chr21 2189168 2189512 -32718058 - MST-int LTR MaLR -2 1649 1318 258 214 34 34 chr21 2189576 2189665 -32717905 + C-rich Low_complexity Low_complexity 4 92 0 5466 231 49 46 chr21 2189786 2191404 -32716166 - MSTA-int LTR MaLR 0 1651 28 323 224 147 56 chr21 2191401 2191544 -32716026 + MST-int LTR MaLR 506 661 -990 855 234 78 8 chr21 2191586 2191842 -32715728 - MSTA LTR MaLR -60 368 95 481 152 22 0 chr21 2191858 2191950 -32715620 + MST-int LTR MaLR 976 1069 -582 499 208 60 34 chr21 2191948 2192097 -32715473 + THE1-int LTR MaLR 1039 1191 -389 231 214 18 0 chr21 2192085 2192141 -32715429 - MST-int LTR MaLR -616 1035 979 369 202 32 0 chr21 2192235 2192329 -32715241 - MSTA LTR MaLR -331 97 1 1256 213 9 46 chr21 2192329 2192676 -32714894 - MSTA-int LTR MaLR 0 1651 1318 281 229 33 0 chr21 2192683 2192744 -32714826 - MSTA LTR MaLR -269 159 97 417 224 20 0 chr21 2192822 2192920 -32714650 - MSTA LTR MaLR -328 100 1 5501 227 54 41 chr21 2192920 2194518 -32713052 - MSTA-int LTR MaLR 0 1651 34 845 214 58 36 chr21 2194672 2194948 -32712622 - MSTA LTR MaLR -52 376 95 433 223 11 0 chr21 2194961 2195055 -32712515 + MST-int LTR MaLR 976 1070 -581 488 186 36 36 chr21 2195052 2195192 -32712378 + THE1-int LTR MaLR 1039 1178 -402 3815 106 27 4 chr21 2195317 2195867 -32711703 + LTR6A LTR ERV1 1 563 -1 391 204 21 0 chr21 2195899 2195992 -32711578 - MSTA LTR MaLR -333 95 1 1060 241 40 34 chr21 2195992 2196315 -32711255 - MSTA-int LTR MaLR 0 1651 1327 285 196 88 88 chr21 2196317 2196419 -32711151 - MSTA LTR MaLR -252 176 75 373 222 9 37 chr21 2196463 2196571 -32710999 - MSTA LTR MaLR -323 105 1 551 181 9 0 chr21 2196571 2196687 -32710883 - MSTA-int LTR MaLR 0 1651 1535 3532 241 37 30 chr21 2196683 2197992 -32709578 - MSTA-int LTR MaLR -262 1389 32 463 226 161 7 chr21 2197997 2198134 -32709436 + MST-int LTR MaLR 510 667 -984 935 235 67 11 chr21 2198162 2198447 -32709123 - MSTA LTR MaLR -52 376 76 451 232 33 22 chr21 2198451 2198694 -32708876 + THE1-int LTR MaLR 907 1191 -389 260 214 18 0 chr21 2198682 2198738 -32708832 - THE1-int LTR MaLR -613 967 911 274 197 33 0 chr21 2198854 2198915 -32708655 - MSTA LTR MaLR -363 65 3 1181 213 40 43 chr21 2198917 2199245 -32708325 - MSTA-int LTR MaLR 0 1651 1325 270 245 113 9 chr21 2199245 2199351 -32708219 - MSTA LTR MaLR -252 176 60 436 227 21 0 chr21 2199400 2199497 -32708073 - MSTA LTR MaLR -329 99 1 4756 246 45 43 chr21 2199497 2201035 -32706535 - MSTA-int LTR MaLR 0 1580 40 473 208 156 10 chr21 2201044 2201195 -32706375 + MST-int LTR MaLR 466 661 -963 794 250 52 45 chr21 2201203 2201491 -32706079 - MSTA LTR MaLR -43 385 96 646 229 179 21 chr21 2201514 2201754 -32705816 + MST-int LTR MaLR 976 1253 -398 249 172 17 35 chr21 2201745 2201803 -32705767 - MST-int LTR MaLR -616 1035 979 391 204 11 0 chr21 2201903 2201996 -32705574 - MSTA LTR MaLR -334 94 1 1072 223 22 47 chr21 2201996 2202315 -32705255 - MSTA-int LTR MaLR 0 1651 1341 303 219 49 85 chr21 2202321 2202403 -32705167 - MSTA LTR MaLR -257 171 93 616 159 9 0 chr21 2202571 2202684 -32704886 - MSTA-int LTR MaLR 0 1651 1538 361 250 7 34 chr21 2202696 2202844 -32704726 + C-rich Low_complexity Low_complexity 4 147 0 287 196 93 41 chr21 2202845 2202942 -32704628 - MSTB2 LTR MaLR -342 115 14 6185 229 52 22 chr21 2202944 2204521 -32703049 - MSTB-int LTR MaLR 0 1651 28 228 234 0 16 chr21 2204515 2204579 -32702991 + MST-int LTR MaLR 503 565 -1086 933 239 69 38 chr21 2204689 2204978 -32702592 - MSTB LTR MaLR -54 372 75 335 284 11 0 chr21 2204983 2205071 -32702499 + MST-int LTR MaLR 976 1064 -587 478 211 42 35 chr21 2205080 2205222 -32702348 + THE1-int LTR MaLR 1045 1187 -393 475 168 21 11 chr21 2205356 2205451 -32702119 - MSTB LTR MaLR -332 96 1 1351 226 3 41 chr21 2205451 2205792 -32701778 - MSTB-int LTR MaLR 0 1651 1324 331 234 149 0 chr21 2205792 2205899 -32701671 - MSTA LTR MaLR -248 180 58 376 263 10 0 chr21 2205944 2206043 -32701527 - MSTA LTR MaLR -328 100 1 406 145 26 0 chr21 2206043 2206119 -32701451 - MSTA-int LTR MaLR 0 1651 1574 242 143 0 0 chr21 2206139 2206174 -32701396 + MSTB2 LTR MaLR 363 397 -60 5669 220 52 37 chr21 2206254 2207786 -32699784 - MSTA-int LTR MaLR -68 1583 28 514 240 32 26 chr21 2207781 2207935 -32699635 + THE1-int LTR MaLR 463 617 -963 1064 242 55 10 chr21 2207952 2208241 -32699329 - MSTA LTR MaLR -52 376 75 546 258 179 21 chr21 2208244 2208484 -32699086 + MST-int LTR MaLR 976 1253 -398 226 193 35 18 chr21 2208474 2208531 -32699039 - THE1-int LTR MaLR -612 968 911 466 208 10 0 chr21 2208627 2208723 -32698847 - MSTA LTR MaLR -331 97 1 1477 206 9 44 chr21 2208725 2209069 -32698501 - MSTA-int LTR MaLR -2 1649 1318 347 231 0 0 chr21 2209076 2209141 -32698429 - MSTA LTR MaLR -269 159 95 210 287 32 0 chr21 2209142 2209236 -32698334 + (CACCC)n Simple_repeat Simple_repeat 3 99 0 5888 222 52 45 chr21 2209344 2210955 -32696615 - MSTA-int LTR MaLR -1 1650 28 385 194 41 20 chr21 2210952 2211050 -32696520 + THE1-int LTR MaLR 465 564 -1016 852 235 82 12 chr21 2211137 2211392 -32696178 - MSTA LTR MaLR -61 367 95 654 183 28 22 chr21 2211407 2211651 -32695919 + THE1-int LTR MaLR 907 1191 -389 260 214 18 0 chr21 2211639 2211695 -32695875 - THE1-int LTR MaLR -613 967 911 488 189 21 0 chr21 2211789 2211884 -32695686 - MSTA LTR MaLR -331 97 1 1408 213 3 40 chr21 2211884 2212231 -32695339 - MSTA-int LTR MaLR 0 1651 1318 277 258 32 0 chr21 2212238 2212300 -32695270 - MSTA LTR MaLR -269 159 96 393 219 42 21 chr21 2212377 2212473 -32695097 - MSTA LTR MaLR -328 100 3 5887 233 53 33 chr21 2212475 2214061 -32693509 - MSTA-int LTR MaLR 0 1651 34 299 239 64 37 chr21 2214065 2214174 -32693396 + THE1-int LTR MaLR 466 577 -1003 916 206 76 54 chr21 2214216 2214492 -32693078 - MSTA LTR MaLR -52 376 95 497 217 26 23 chr21 2214504 2214736 -32692834 + THE1-int LTR MaLR 907 1178 -402 3990 104 27 4 chr21 2214859 2215409 -32692161 + LTR6A LTR ERV1 1 563 -1 444 200 21 0 chr21 2215440 2215535 -32692035 - MSTA LTR MaLR -331 97 1 1135 211 53 43 chr21 2215535 2215857 -32691713 - MSTA-int LTR MaLR 0 1651 1327 310 262 103 9 chr21 2215859 2215966 -32691604 - MSTA LTR MaLR -252 176 60 435 224 10 0 chr21 2216015 2216113 -32691457 - MSTA LTR MaLR -329 99 1 577 190 9 0 chr21 2216113 2216229 -32691341 - MSTA-int LTR MaLR 0 1651 1535 4380 218 45 65 chr21 2216225 2217547 -32690023 - MSTA-int LTR MaLR -259 1321 27 514 240 32 26 chr21 2217540 2217694 -32689876 + THE1-int LTR MaLR 463 617 -963 1014 242 57 4 chr21 2217714 2217978 -32689592 - MSTA LTR MaLR -55 373 96 536 254 179 21 chr21 2218003 2218243 -32689327 + MST-int LTR MaLR 976 1253 -398 267 137 39 20 chr21 2218233 2218284 -32689286 - THE1-int LTR MaLR -612 968 917 448 211 11 0 chr21 2218387 2218482 -32689088 - MSTA LTR MaLR -332 96 1 1466 212 6 43 chr21 2218484 2218829 -32688741 - MSTA-int LTR MaLR -2 1649 1318 302 236 18 73 chr21 2218836 2218946 -32688624 - MSTA LTR MaLR -269 159 56 5450 237 60 24 chr21 2219104 2220668 -32686902 - MSTA-int LTR MaLR 0 1651 32 513 212 167 0 chr21 2220671 2220803 -32686767 + MST-int LTR MaLR 508 661 -990 1223 211 63 7 chr21 2220837 2221121 -32686449 - MSTA LTR MaLR -52 376 77 686 232 187 21 chr21 2221127 2221368 -32686202 + MST-int LTR MaLR 976 1256 -395 295 179 18 0 chr21 2221356 2221412 -32686158 - MSTA-int LTR MaLR -613 967 911 317 250 0 10 chr21 2221524 2221628 -32685942 - MSTA-int LTR MaLR -1521 130 28 434 296 33 0 chr21 2221625 2221777 -32685793 + THE1-int LTR MaLR 465 621 -959 987 227 45 54 chr21 2221792 2222174 -32685396 - MSTA LTR MaLR -52 376 14 1374 163 12 12 chr21 2222176 2222427 -32685143 - MSTA-int LTR MaLR 0 1651 1401 1333 185 0 0 chr21 2222424 2222662 -32684908 - MSTA-int LTR MaLR -1401 250 13 1330 246 95 3 chr21 2222691 2223028 -32684542 - MSTA LTR MaLR -60 368 1 2106 87 67 45 chr21 2225113 2225517 -32682053 + SN5 Satellite centromeric 1 413 -42 189 237 0 0 chr21 2225793 2225852 -32681718 + (TG)n Simple_repeat Simple_repeat 2 60 0 881 204 28 6 chr21 2227330 2227511 -32680059 + L1MC4 LINE L1 6819 7003 -1039 896 187 43 30 chr21 2227553 2227788 -32679782 + L1MC4 LINE L1 7137 7374 -668 266 271 200 35 chr21 2228587 2228757 -32678813 - L2 LINE L2 -166 3106 2909 21 0 0 0 chr21 2229352 2229373 -32678197 + AT_rich Low_complexity Low_complexity 1 21 0 2089 133 7 0 chr21 2229735 2230029 -32677541 + AluSc SINE Alu 1 296 -13 4505 172 43 19 chr21 2230189 2230852 -32676718 - L1PA16 LINE L1 0 6166 5467 207 0 0 0 chr21 2230852 2230875 -32676695 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4505 172 43 19 chr21 2230875 2231327 -32676243 - L1PA16 LINE L1 -699 5467 5027 1999 147 17 0 chr21 2231364 2231664 -32675906 - AluSx SINE Alu -7 305 1 1955 117 3 45 chr21 2231842 2232151 -32675419 - AluSg1 SINE Alu -10 299 4 2066 135 3 0 chr21 2232182 2232479 -32675091 + AluSg SINE Alu 1 298 -12 386 267 0 0 chr21 2233429 2233530 -32674040 + L1MA9 LINE L1 6163 6263 -49 1601 211 13 30 chr21 2235953 2236251 -32671319 + AluJo SINE Alu 3 295 -7 2980 215 32 11 chr21 2236364 2237480 -32670090 + L1MA5 LINE L1 4808 5946 -354 961 256 31 8 chr21 2237481 2237739 -32669831 + AluJo SINE Alu 1 264 -48 1364 178 65 0 chr21 2237806 2238082 -32669488 + L1MA5 LINE L1 6001 6294 -6 723 312 85 17 chr21 2238119 2238498 -32669072 + MLT1G1 LTR MaLR 79 561 -34 2150 223 46 12 chr21 2239843 2240793 -32666777 + L1MB8 LINE L1 4771 5757 -421 658 122 0 19 chr21 2240800 2240907 -32666663 + L1MB8 LINE L1 5732 5836 -342 2116 150 75 5 chr21 2240916 2241327 -32666243 + MER61C LTR ERV1 11 434 0 375 157 14 0 chr21 2241327 2241397 -32666173 + L1MB8 LINE L1 5833 5903 -275 989 212 35 17 chr21 2241419 2241650 -32665920 + L1MB8 LINE L1 5939 6173 -5 1023 204 56 39 chr21 2241870 2242234 -32665336 + MER4E LTR ERV1 1 375 -391 3395 119 44 0 chr21 2242330 2242810 -32664760 + L1PA10 LINE L1 5655 6155 -13 1936 147 3 58 chr21 2243196 2243522 -32664048 - AluSq SINE Alu -5 308 1 22 35 0 0 chr21 2244039 2244068 -32663502 + AT_rich Low_complexity Low_complexity 1 29 0 284 229 0 29 chr21 2244073 2244143 -32663427 - MER34B LTR ERV1 -94 471 404 1599 139 86 4 chr21 2244403 2244707 -32662863 + AluSg SINE Alu 1 326 0 193 279 0 44 chr21 2245548 2245616 -32661954 - L3 LINE CR1 -203 1374 1310 2119 120 0 3 chr21 2245956 2246264 -32661306 - AluSg SINE Alu 0 307 1 2257 129 3 0 chr21 2246613 2246924 -32660646 - AluSx SINE Alu 0 312 1 1361 211 46 4 chr21 2247353 2247512 -32660058 - AluJb SINE Alu -20 292 114 225 0 0 0 chr21 2247512 2247537 -32660033 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1361 211 46 4 chr21 2247537 2247657 -32659913 - AluJb SINE Alu -198 114 1 1936 217 81 26 chr21 2248759 2249252 -32658318 + L1MB8 LINE L1 5653 6172 -6 262 269 103 0 chr21 2250316 2250394 -32657176 + L2 LINE L2 2722 2807 -507 1014 233 40 18 chr21 2251108 2251383 -32656187 - L1MB7 LINE L1 0 6184 5904 5594 106 49 68 chr21 2251918 2254665 -32652905 - SVA Other Other -518 1381 343 23 0 0 0 chr21 2256733 2256756 -32650814 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 2257685 2257706 -32649864 + AT_rich Low_complexity Low_complexity 1 21 0 276 253 104 41 chr21 2257796 2258021 -32649549 - L1P4 LINE L1 -524 5642 5404 2028 142 0 13 chr21 2258140 2258457 -32649113 + AluSq SINE Alu 1 313 0 34 42 0 0 chr21 2258645 2258693 -32648877 + AT_rich Low_complexity Low_complexity 1 48 0 24 53 0 0 chr21 2258769 2258807 -32648763 + AT_rich Low_complexity Low_complexity 1 38 0 634 47 23 0 chr21 2260467 2260553 -32647017 - L1PA5 LINE L1 -1 6153 6066 26 30 0 0 chr21 2262550 2262583 -32644987 + AT_rich Low_complexity Low_complexity 1 33 0 26 64 0 0 chr21 2262837 2262884 -32644686 + AT_rich Low_complexity Low_complexity 1 47 0 1480 238 30 0 chr21 2263273 2263571 -32643999 + AluJo SINE Alu 1 307 -5 211 200 0 0 chr21 2263792 2263832 -32643738 - L2 LINE L2 -12 3301 3262 1947 159 7 0 chr21 2264114 2264416 -32643154 - AluSx SINE Alu -8 304 1 1939 154 11 0 chr21 2264879 2265165 -32642405 - AluSp SINE Alu -24 289 1 22 56 0 0 chr21 2266785 2266821 -32640749 + AT_rich Low_complexity Low_complexity 1 36 0 1882 165 0 0 chr21 2266933 2267236 -32640334 + AluSx SINE Alu 6 308 -4 244 196 0 0 chr21 2268232 2268278 -32639292 + (CA)n Simple_repeat Simple_repeat 1 46 0 279 181 208 0 chr21 2270465 2270537 -32637033 + MER5A DNA MER1_type 20 106 -83 2336 89 0 0 chr21 2271400 2271693 -32635877 - AluY SINE Alu -18 293 1 1261 250 0 24 chr21 2271889 2272185 -32635385 - AluJo SINE Alu -23 289 1 1569 213 0 7 chr21 2272219 2272501 -32635069 + AluJb SINE Alu 3 282 -30 6367 47 0 0 chr21 2272887 2273658 -32633912 + L1PA5 LINE L1 5376 6146 -8 21 89 0 0 chr21 2273892 2273948 -32633622 + AT_rich Low_complexity Low_complexity 1 56 0 1244 210 30 54 chr21 2274044 2274339 -32633231 + AluJb SINE Alu 13 300 -12 1885 123 6 85 chr21 2274513 2274831 -32632739 - AluSx SINE Alu -19 293 1 649 206 0 0 chr21 2275084 2275191 -32632379 - FLAM_A SINE Alu -35 107 1 22 35 0 0 chr21 2276490 2276519 -32631051 + AT_rich Low_complexity Low_complexity 1 29 0 563 240 0 24 chr21 2278575 2278700 -32628870 + FLAM_C SINE Alu 7 128 -15 647 166 45 19 chr21 2279146 2279303 -32628267 - MER21A LTR ERV1 -24 907 747 812 127 45 0 chr21 2279304 2279438 -32628132 + Tigger7 DNA MER2_type 2348 2487 0 2360 153 2 40 chr21 2280454 2280899 -32626671 + L1MC1 LINE L1 5906 6333 0 1883 164 17 0 chr21 2280909 2281202 -32626368 + AluSq SINE Alu 1 298 -15 28 0 0 0 chr21 2281239 2281267 -32626303 + AT_rich Low_complexity Low_complexity 1 28 0 2157 125 6 6 chr21 2281267 2281578 -32625992 + AluSx SINE Alu 1 311 -1 27 0 0 0 chr21 2281701 2281728 -32625842 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr21 2282059 2282096 -32625474 + AT_rich Low_complexity Low_complexity 1 37 0 2588 192 46 7 chr21 2282129 2282670 -32624900 + MER68 LTR ERV1 1 562 0 1299 161 0 109 chr21 2283036 2283340 -32624230 + AluJb SINE Alu 1 271 -41 863 187 0 0 chr21 2283421 2283560 -32624010 + FAM SINE Alu 22 160 -25 188 119 0 48 chr21 2283880 2283922 -32623648 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 1896 193 35 14 chr21 2284175 2284600 -32622970 + Tigger2a DNA MER2_type 1 434 0 21 71 0 0 chr21 2284600 2284642 -32622928 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 2284869 2284891 -32622679 + AT_rich Low_complexity Low_complexity 1 22 0 546 217 0 0 chr21 2286155 2286261 -32621309 - U6 snRNA snRNA -1 106 1 21 0 0 0 chr21 2286377 2286398 -32621172 + AT_rich Low_complexity Low_complexity 1 21 0 614 186 0 0 chr21 2287224 2287337 -32620233 + FLAM_C SINE Alu 31 143 0 2135 129 0 0 chr21 2288261 2288548 -32619022 + AluSc SINE Alu 1 287 -22 21 0 0 0 chr21 2290019 2290040 -32617530 + AT_rich Low_complexity Low_complexity 1 21 0 371 270 24 16 chr21 2290418 2290544 -32617026 - MER102b DNA MER1_type -1 340 214 342 0 0 0 chr21 2291543 2291581 -32615989 + (TG)n Simple_repeat Simple_repeat 1 38 0 483 288 121 25 chr21 2293503 2293701 -32613869 + MIR SINE MIR 20 236 -26 1656 186 3 7 chr21 2293709 2294004 -32613566 - AluJo SINE Alu -18 294 1 33 56 0 0 chr21 2294834 2294888 -32612682 + AT_rich Low_complexity Low_complexity 1 54 0 256 192 48 32 chr21 2295812 2295937 -32611633 + (TA)n Simple_repeat Simple_repeat 1 127 0 2128 132 3 0 chr21 2295949 2296260 -32611310 + AluSx SINE Alu 1 312 0 24 32 0 0 chr21 2296306 2296337 -32611233 + AT_rich Low_complexity Low_complexity 1 31 0 230 274 63 11 chr21 2298215 2298390 -32609180 - HSREP522 Satellite telomeric -291 231 48 334 250 19 37 chr21 2299024 2299240 -32608330 - HSREP522 Satellite telomeric -190 332 121 844 151 23 10 chr21 2299739 2300010 -32607560 + HSREP522 Satellite telomeric 1 274 -4 3880 220 62 10 chr21 2300010 2301287 -32606283 - L1 LINE L1 -2021 4125 2785 308 279 84 53 chr21 2301454 2301716 -32605854 + HSREP522 Satellite telomeric 40 309 -213 255 174 0 58 chr21 2302604 2302759 -32604811 + (CCCTG)n Simple_repeat Simple_repeat 1 146 0 190 167 8 56 chr21 2302915 2303041 -32604529 + (CCCTG)n Simple_repeat Simple_repeat 1 120 0 293 161 10 99 chr21 2303048 2303240 -32604330 + (GCCTG)n Simple_repeat Simple_repeat 5 179 0 319 164 5 97 chr21 2303106 2303301 -32604269 + (CCCTG)n Simple_repeat Simple_repeat 1 177 0 345 154 0 109 chr21 2303399 2303600 -32603970 + (CCCTG)n Simple_repeat Simple_repeat 1 179 0 231 158 0 59 chr21 2303633 2303734 -32603836 + (CCCTG)n Simple_repeat Simple_repeat 1 95 0 326 161 0 118 chr21 2303948 2304243 -32603327 + (CCCTG)n Simple_repeat Simple_repeat 1 260 0 331 159 5 101 chr21 2304291 2304480 -32603090 + (CCCTG)n Simple_repeat Simple_repeat 4 174 0 378 158 0 102 chr21 2304523 2304719 -32602851 + (CCCTG)n Simple_repeat Simple_repeat 1 176 0 311 119 0 89 chr21 2304751 2304919 -32602651 + (CCCTG)n Simple_repeat Simple_repeat 5 157 0 369 180 0 90 chr21 2304960 2305138 -32602432 + (CCCTG)n Simple_repeat Simple_repeat 4 165 0 227 121 7 94 chr21 2305193 2305342 -32602228 + (CCCTG)n Simple_repeat Simple_repeat 1 136 0 314 139 0 57 chr21 2305366 2305488 -32602082 + (CCCTG)n Simple_repeat Simple_repeat 2 116 0 962 144 47 56 chr21 2305519 2305734 -32601836 - L1MB7 LINE L1 -87 6097 5885 2189 121 3 3 chr21 2305818 2306115 -32601455 - AluSp SINE Alu -16 297 1 1232 141 0 5 chr21 2306148 2306333 -32601237 + AluSg/x SINE Alu 127 310 0 397 354 49 21 chr21 2306494 2306923 -32600647 - L1MC4a LINE L1 -1902 5906 5466 867 135 26 47 chr21 2306939 2307132 -32600438 + L1MA9 LINE L1 6124 6312 0 1562 245 75 9 chr21 2307367 2307832 -32599738 + L1ME1 LINE L1 5662 6157 -9 39778 68 9 4 chr21 2307851 2313264 -32594306 - L1P2 LINE L1 -711 5443 13 2428 133 65 99 chr21 2313542 2314159 -32593411 - L1MB3 LINE L1 -1 6182 5587 22 0 0 0 chr21 2314236 2314258 -32593312 + AT_rich Low_complexity Low_complexity 1 22 0 2277 122 0 0 chr21 2314402 2314706 -32592864 - AluSg SINE Alu -6 304 1 8008 226 55 23 chr21 2314843 2316773 -32590797 - L1MC4a LINE L1 -847 5299 3267 1953 154 10 3 chr21 2316773 2317066 -32590504 - AluSx SINE Alu -17 295 1 8008 226 55 23 chr21 2317066 2317696 -32589874 - L1MC4a LINE L1 -2879 3267 2658 2018 131 7 13 chr21 2318026 2318331 -32589239 + AluSx SINE Alu 6 308 -4 23 78 0 0 chr21 2320144 2320195 -32587375 + AT_rich Low_complexity Low_complexity 1 51 0 2156 107 24 3 chr21 2320389 2320680 -32586890 + AluSq SINE Alu 1 297 -16 2052 133 3 23 chr21 2321020 2321329 -32586241 + AluSg1 SINE Alu 1 303 -6 2342 74 0 0 chr21 2321342 2321656 -32585914 + AluY SINE Alu 2 315 0 1372 154 67 29 chr21 2323571 2323883 -32583687 - MER33 DNA MER1_type 0 324 1 1159 204 14 14 chr21 2323892 2324112 -32583458 - MER58A DNA MER1_type -1 223 4 1799 115 0 0 chr21 2324526 2324760 -32582810 + AluSq SINE Alu 1 234 -79 251 316 73 15 chr21 2325481 2325617 -32581953 + MIR SINE MIR 22 165 -97 267 114 0 0 chr21 2328396 2328440 -32579130 + (TCCC)n Simple_repeat Simple_repeat 1 44 0 2353 101 3 0 chr21 2334071 2334367 -32573203 + AluSg SINE Alu 1 297 -13 2004 132 3 10 chr21 2334378 2334682 -32572888 + AluSx SINE Alu 1 302 -10 1097 82 0 0 chr21 2335288 2335422 -32572148 - AluSq/x SINE Alu -179 134 1 2133 135 6 25 chr21 2335424 2335742 -32571828 - AluSx SINE Alu 0 312 1 249 290 16 0 chr21 2335948 2336010 -32571560 + L2 LINE L2 3251 3313 0 1579 212 10 7 chr21 2336289 2336596 -32570974 - AluJo SINE Alu -4 308 1 22 0 0 0 chr21 2336596 2336618 -32570952 + AT_rich Low_complexity Low_complexity 1 22 0 2077 104 76 0 chr21 2338489 2338777 -32568793 - AluSg SINE Alu 0 310 1 29 70 0 0 chr21 2339190 2339247 -32568323 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr21 2341762 2341790 -32565780 + AT_rich Low_complexity Low_complexity 1 28 0 191 242 136 30 chr21 2342010 2342076 -32565494 + L2 LINE L2 3191 3263 -9 544 283 31 25 chr21 2342252 2342411 -32565159 - MER5B DNA MER1_type -18 160 1 409 263 0 8 chr21 2343394 2343512 -32564058 + MLT1H LTR MaLR 359 475 -74 1954 131 58 0 chr21 2344318 2344609 -32562961 - AluSg SINE Alu 0 310 3 1406 252 25 13 chr21 2345602 2345998 -32561572 - MER93a LTR ERV1 0 402 2 542 228 50 78 chr21 2347106 2347325 -32560245 - MER92B LTR ERV1 -120 516 304 189 0 0 0 chr21 2347334 2347355 -32560215 + (T)n Simple_repeat Simple_repeat 1 21 0 993 236 69 18 chr21 2347593 2347945 -32559625 + MER21B LTR ERV1 417 856 -75 1525 217 80 32 chr21 2348657 2348825 -32558745 + MER67C LTR ERV1 1 160 -550 402 21 0 0 chr21 2348825 2348872 -32558698 + (TG)n Simple_repeat Simple_repeat 2 48 0 1525 217 80 32 chr21 2348872 2349253 -32558317 + MER67C LTR ERV1 160 657 -53 2374 54 0 19 chr21 2349253 2349569 -32558001 - AluY SINE Alu -1 310 1 1525 217 80 32 chr21 2349569 2349621 -32557949 + MER67C LTR ERV1 657 705 -5 2155 107 0 3 chr21 2351589 2351888 -32555682 + AluSq SINE Alu 1 298 -15 254 250 15 98 chr21 2352119 2352251 -32555319 + MIR SINE MIR 133 253 -9 317 315 0 0 chr21 2352694 2352786 -32554784 + MER5A DNA MER1_type 19 110 -79 669 344 100 34 chr21 2354426 2354978 -32552592 - L3 LINE CR1 -3 1574 987 2050 121 59 9 chr21 2355148 2355486 -32552084 - THE1A LTR MaLR 0 355 1 239 289 74 16 chr21 2356220 2356341 -32551229 - MER117 DNA MER1_type -53 144 17 603 274 6 24 chr21 2357323 2357491 -32550079 - LTR33 LTR ERVL -356 165 1 4423 92 3 2 chr21 2358521 2359127 -32548443 - L1PA14 LINE L1 -3 6158 5552 1055 351 11 15 chr21 2359578 2360039 -32547531 + L1MEc LINE L1 139 597 -5799 933 185 50 12 chr21 2360056 2360315 -32547255 + L1MEc LINE L1 663 931 -5465 4403 260 49 41 chr21 2360376 2361223 -32546347 + L1MEc LINE L1 1043 1881 -4334 2317 135 113 2 chr21 2361223 2361667 -32545903 + LTR54B LTR ERV1 4 496 -2 4403 260 49 41 chr21 2361667 2362056 -32545514 + L1MEc LINE L1 1881 2265 -3950 1999 103 17 17 chr21 2362056 2362347 -32545223 + AluSq SINE Alu 1 291 -22 4403 260 49 41 chr21 2362347 2363950 -32543620 + L1MEc LINE L1 2265 3916 -2299 892 236 44 25 chr21 2363975 2364250 -32543320 + L1MCb LINE L1 1 280 -5765 1196 253 81 16 chr21 2364265 2364637 -32542933 + L1MCb LINE L1 312 707 -5338 1023 125 7 0 chr21 2364640 2364792 -32542778 + AluSp SINE Alu 138 290 -23 362 97 48 0 chr21 2364792 2364854 -32542716 + (GAGTG)n Simple_repeat Simple_repeat 3 67 0 1304 247 11 11 chr21 2364857 2365209 -32542361 + L1MCb LINE L1 701 1052 -4993 260 119 24 0 chr21 2365209 2365251 -32542319 - U2 snRNA snRNA -145 43 1 431 185 100 15 chr21 2365251 2365381 -32542189 + L1MCb LINE L1 1048 1188 -4857 446 274 77 0 chr21 2365389 2365506 -32542064 + L1MCb LINE L1 1191 1316 -5248 1428 212 31 21 chr21 2365529 2366057 -32541513 + L1MCb LINE L1 1748 2146 -4418 2095 222 43 30 chr21 2366060 2366596 -32540974 - LTR55 LTR ERV -5 543 1 1514 245 30 9 chr21 2366687 2367375 -32540195 + L1MCb LINE L1 2286 2995 -3569 1726 251 69 46 chr21 2367377 2368177 -32539393 + L1MCb LINE L1 3475 4292 -2272 719 215 100 67 chr21 2368255 2368585 -32538985 + L1MCb LINE L1 5122 5462 -1102 1377 207 14 11 chr21 2368588 2368868 -32538702 + AluJo SINE Alu 6 286 -26 981 210 37 29 chr21 2368883 2369155 -32538415 + L1MCb LINE L1 5450 5723 -841 605 232 81 32 chr21 2369197 2369443 -32538127 + L1ME2 LINE L1 4581 4838 -1308 2086 238 88 28 chr21 2369442 2370353 -32537217 + L1ME2 LINE L1 5176 6143 -21 2273 108 22 41 chr21 2370468 2370883 -32536687 - L1PA13 LINE L1 -3 6160 5754 1066 107 0 7 chr21 2370891 2371041 -32536529 - AluSq/x SINE Alu -164 149 1 486 108 0 0 chr21 2371042 2371116 -32536454 - L1PA13 LINE L1 -1815 4331 4258 941 116 0 0 chr21 2371116 2371254 -32536316 + AluSg/x SINE Alu 172 309 -1 5266 154 18 5 chr21 2371256 2372149 -32535421 - L1PA13 LINE L1 -1887 4259 3355 1293 88 0 88 chr21 2372155 2372370 -32535200 - AluSx SINE Alu -116 196 1 366 207 0 67 chr21 2372417 2372596 -32534974 + (CAGGG)n Simple_repeat Simple_repeat 1 167 0 219 128 0 90 chr21 2372603 2372681 -32534889 + (CCCTG)n Simple_repeat Simple_repeat 1 71 0 882 113 0 8 chr21 2372736 2372869 -32534701 - AluSq/x SINE Alu -176 137 6 444 225 22 84 chr21 2372873 2373051 -32534519 + MIR SINE MIR 96 262 0 334 156 0 102 chr21 2373163 2373349 -32534221 + (CCCTG)n Simple_repeat Simple_repeat 3 169 0 289 174 0 104 chr21 2373542 2373743 -32533827 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 435 163 0 87 chr21 2373786 2373982 -32533588 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 378 167 3 96 chr21 2374012 2374329 -32533241 + (CAGGG)n Simple_repeat Simple_repeat 1 287 0 254 139 0 58 chr21 2374641 2374727 -32532843 + (CAGGG)n Simple_repeat Simple_repeat 1 81 0 385 182 5 88 chr21 2375010 2375202 -32532368 + (CAGGG)n Simple_repeat Simple_repeat 1 176 0 327 143 0 148 chr21 2375379 2375589 -32531981 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 189 178 0 59 chr21 2375814 2375915 -32531655 + (CAGGG)n Simple_repeat Simple_repeat 1 95 0 334 154 0 109 chr21 2375942 2376143 -32531427 + (CAGGG)n Simple_repeat Simple_repeat 1 179 0 277 157 0 116 chr21 2376178 2376376 -32531194 + (CAGGG)n Simple_repeat Simple_repeat 1 175 0 182 57 0 94 chr21 2376377 2376430 -32531140 + (CAGGC)n Simple_repeat Simple_repeat 5 52 0 211 159 8 56 chr21 2376511 2376637 -32530933 + (CAGGG)n Simple_repeat Simple_repeat 1 120 0 227 169 13 97 chr21 2376646 2376800 -32530770 + (CAGGC)n Simple_repeat Simple_repeat 3 143 0 221 182 0 53 chr21 2376839 2376971 -32530599 + (CAGGG)n Simple_repeat Simple_repeat 2 126 0 4158 215 64 9 chr21 2378292 2379568 -32528002 + L1 LINE L1 2785 4121 -2025 1006 150 16 6 chr21 2379568 2379840 -32527730 - HSREP522 Satellite telomeric -185 274 1 362 283 19 19 chr21 2380340 2380552 -32527018 + HSREP522 Satellite telomeric 121 332 -190 22 35 0 0 chr21 2383229 2383258 -32524312 + AT_rich Low_complexity Low_complexity 1 29 0 405 0 0 0 chr21 2383296 2383341 -32524229 + (TA)n Simple_repeat Simple_repeat 2 46 0 2067 125 3 0 chr21 2383347 2383658 -32523912 - AluSx SINE Alu 0 312 1 243 205 54 18 chr21 2383683 2383795 -32523775 + (TA)n Simple_repeat Simple_repeat 2 117 0 27 0 0 0 chr21 2384745 2384772 -32522798 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 2385238 2385259 -32522311 + AT_rich Low_complexity Low_complexity 1 21 0 1657 172 10 0 chr21 2385603 2385893 -32521677 + AluJo SINE Alu 1 293 -19 487 288 121 25 chr21 2385901 2386099 -32521471 - MIR SINE MIR -26 236 20 204 40 0 0 chr21 2387339 2387364 -32520206 + (TAA)n Simple_repeat Simple_repeat 3 27 0 200 242 11 0 chr21 2387553 2387648 -32519922 + CT-rich Low_complexity Low_complexity 2 97 0 247 300 0 0 chr21 2387712 2387792 -32519778 + (TG)n Simple_repeat Simple_repeat 1 80 0 591 204 15 0 chr21 2389191 2389323 -32518247 + GSATX Satellite centromeric 64 197 -21 576 219 4 17 chr21 2389337 2389574 -32517996 - GSATX Satellite centromeric -116 234 1 1012 222 10 14 chr21 2389590 2391989 -32515581 - GSATX Satellite centromeric -9 2389 1 683 204 0 0 chr21 2392003 2392145 -32515425 - GSATX Satellite centromeric -20 198 57 205 245 0 21 chr21 2394585 2394679 -32512891 + GA-rich Low_complexity Low_complexity 3 94 0 689 168 12 20 chr21 2394718 2394964 -32512606 + GA-rich Low_complexity Low_complexity 1 244 0 1227 209 7 47 chr21 2394989 2395285 -32512285 + AluJb SINE Alu 5 288 -24 1923 106 75 17 chr21 2395386 2395679 -32511891 + AluSg SINE Alu 1 310 0 398 168 35 9 chr21 2395682 2395795 -32511775 + GA-rich Low_complexity Low_complexity 4 119 0 1821 143 34 0 chr21 2396842 2397136 -32510434 + AluSx SINE Alu 1 304 -8 1466 160 4 0 chr21 2397137 2397368 -32510202 + PABL_A LTR ERV1 429 660 0 904 132 0 101 chr21 2397434 2397623 -32509947 + AluJo SINE Alu 120 289 -23 1114 243 74 13 chr21 2397756 2398065 -32509505 + ERVL LTR ERVL 3261 3588 -2176 226 176 59 39 chr21 2398075 2398126 -32509444 + AluSp SINE Alu 119 170 -133 4586 67 3 2 chr21 2398132 2398711 -32508859 - LTR14C LTR ERVK 0 587 8 1666 167 4 0 chr21 2398711 2398974 -32508596 + AluSx SINE Alu 29 292 -20 469 136 0 0 chr21 2399019 2399085 -32508485 + AluJ/FLAM SINE Alu 1 66 -246 1468 151 125 11 chr21 2399171 2399188 -32508382 - AluSp SINE Alu 0 303 289 288 0 0 0 chr21 2399188 2399220 -32508350 + (TAG)n Simple_repeat Simple_repeat 1 32 0 1468 151 125 11 chr21 2399220 2399474 -32508096 - AluSp SINE Alu -14 289 1 1982 107 37 4 chr21 2399476 2399771 -32507799 - AluSg SINE Alu 0 305 2 759 171 7 7 chr21 2400524 2400664 -32506906 + AluJb SINE Alu 2 141 -171 31 44 0 0 chr21 2400681 2400726 -32506844 + AT_rich Low_complexity Low_complexity 1 45 0 1198 161 141 24 chr21 2400804 2401059 -32506511 - AluJb SINE Alu -17 285 1 2183 119 3 0 chr21 2402930 2403233 -32504337 + AluSq SINE Alu 3 306 -7 1948 112 15 8 chr21 2403252 2403519 -32504051 - AluSx SINE Alu -43 269 1 2168 123 3 0 chr21 2403641 2403942 -32503628 - AluSq SINE Alu -11 302 1 1966 154 7 0 chr21 2404804 2405097 -32502473 - AluSx SINE Alu -17 295 1 2080 113 7 0 chr21 2405448 2405730 -32501840 + AluSx SINE Alu 3 286 -26 621 100 53 0 chr21 2405748 2405918 -32501652 + (TA)n Simple_repeat Simple_repeat 2 180 0 31 0 0 0 chr21 2405918 2405949 -32501621 + AT_rich Low_complexity Low_complexity 1 31 0 199 116 27 75 chr21 2405949 2406096 -32501474 + (TATAA)n Simple_repeat Simple_repeat 5 144 0 30 27 0 0 chr21 2406096 2406133 -32501437 + AT_rich Low_complexity Low_complexity 1 37 0 201 74 0 0 chr21 2406422 2406449 -32501121 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 3526 169 32 15 chr21 2406456 2406729 -32500841 - L1 LINE L1 -3243 3605 3338 2124 139 7 0 chr21 2406729 2407030 -32500540 - AluSx SINE Alu -9 303 1 3526 169 32 15 chr21 2407030 2407802 -32499768 - L1 LINE L1 -3510 3338 2540 24 53 0 0 chr21 2408637 2408675 -32498895 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr21 2409097 2409137 -32498433 + AT_rich Low_complexity Low_complexity 1 40 0 1123 107 117 29 chr21 2409734 2409939 -32497631 - LTR12 LTR ERV1 0 671 449 332 266 9 0 chr21 2409941 2410050 -32497520 - LTR30 LTR ERV1 -69 653 544 6204 99 21 26 chr21 2410050 2411200 -32496370 - pTR5 LTR ERV1 -413 2025 743 228 237 21 82 chr21 2411220 2411317 -32496253 + MIR3 SINE MIR 110 200 -8 1893 137 3 18 chr21 2411435 2411768 -32495802 + AluSx SINE Alu 1 329 0 1074 182 0 0 chr21 2411901 2412077 -32495493 - AluJ SINE Alu -5 307 132 1704 168 23 16 chr21 2412097 2412407 -32495163 + AluJo SINE Alu 1 312 0 189 0 0 0 chr21 2412576 2412597 -32494973 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1160 131 0 6 chr21 2412597 2412772 -32494798 + FRAM SINE Alu 1 174 -2 195 114 0 0 chr21 2412962 2412997 -32494573 + (T)n Simple_repeat Simple_repeat 1 35 0 188 0 74 0 chr21 2413708 2413735 -32493835 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 209 264 174 39 chr21 2414300 2414455 -32493115 - MER5A DNA MER1_type 0 189 14 190 326 61 0 chr21 2414566 2414664 -32492906 - L3 LINE CR1 -167 1410 1307 845 136 8 15 chr21 2414746 2414878 -32492692 - AluJ SINE Alu -171 141 11 2239 136 0 0 chr21 2414937 2415246 -32492324 - AluSq SINE Alu -2 311 3 241 245 0 0 chr21 2415486 2415535 -32492035 + MIR SINE MIR 3 51 -211 956 134 29 10 chr21 2415571 2416067 -32491503 + (CACCAT)n Simple_repeat Simple_repeat 1 505 0 412 302 8 0 chr21 2416073 2416202 -32491368 - MIR SINE MIR -49 213 84 230 290 86 54 chr21 2416255 2416441 -32491129 - L3 LINE CR1 -731 846 655 2014 162 0 0 chr21 2417804 2418101 -32489469 + AluJo SINE Alu 2 298 -14 442 207 35 17 chr21 2418162 2418278 -32489292 + MIR SINE MIR 145 262 0 2134 134 0 0 chr21 2418414 2418704 -32488866 - AluSx SINE Alu -17 295 6 1981 162 0 10 chr21 2418826 2419134 -32488436 - AluJb SINE Alu -7 305 1 751 294 29 8 chr21 2419192 2419430 -32488140 - MIR SINE MIR -2 260 18 1983 112 60 0 chr21 2420053 2420338 -32487232 + AluSx SINE Alu 1 302 -10 1463 169 6 88 chr21 2420707 2421026 -32486544 - MER4A LTR ERV1 0 664 372 631 122 10 10 chr21 2421078 2421176 -32486394 - MER4A LTR ERV1 -566 98 1 1883 143 4 0 chr21 2421248 2421528 -32486042 + AluSq SINE Alu 1 281 -32 195 100 0 0 chr21 2421528 2421558 -32486012 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 3664 223 37 34 chr21 2421559 2422226 -32485344 - L1M1 LINE L1 -5277 2288 1616 3802 117 25 9 chr21 2422226 2422781 -32484789 + LTR6A LTR ERV1 1 564 0 3664 223 37 34 chr21 2422781 2422946 -32484624 - L1M1 LINE L1 -5949 1616 1453 1812 164 0 16 chr21 2423085 2423389 -32484181 - AluSx SINE Alu -13 299 1 2208 111 0 43 chr21 2423540 2423864 -32483706 + AluSg SINE Alu 1 310 0 405 0 0 0 chr21 2423870 2423915 -32483655 + (TA)n Simple_repeat Simple_repeat 1 45 0 242 165 71 12 chr21 2423940 2424025 -32483545 + (TA)n Simple_repeat Simple_repeat 1 90 0 279 0 0 0 chr21 2424409 2424440 -32483130 + (TG)n Simple_repeat Simple_repeat 2 32 0 1918 183 2 64 chr21 2424779 2425053 -32482517 + MLT1B LTR MaLR 11 254 -136 1841 131 91 29 chr21 2425053 2425404 -32482166 - THE1C LTR MaLR -2 373 1 1918 183 2 64 chr21 2425404 2425534 -32482036 + MLT1B LTR MaLR 254 390 0 382 265 82 20 chr21 2425816 2425963 -32481607 + MIR SINE MIR 81 236 -26 27 49 0 0 chr21 2427780 2427821 -32479749 + AT_rich Low_complexity Low_complexity 1 41 0 2509 163 37 16 chr21 2428020 2428506 -32479064 - L1MA8 LINE L1 -1 6290 5795 198 95 14 68 chr21 2428544 2428618 -32478952 + (TA)n Simple_repeat Simple_repeat 1 70 0 5676 157 10 22 chr21 2428619 2429511 -32478059 - L1MA8 LINE L1 -502 5789 4922 980 212 5 27 chr21 2429511 2429733 -32477837 - L1PB4 LINE L1 0 6156 5940 5676 157 10 22 chr21 2429733 2430306 -32477264 - L1MA8 LINE L1 -1369 4922 4343 22 56 0 0 chr21 2430443 2430479 -32477091 + AT_rich Low_complexity Low_complexity 1 36 0 1372 270 34 31 chr21 2430578 2431361 -32476209 + L1MC3 LINE L1 841 1671 -5050 1731 113 57 60 chr21 2431361 2431571 -32475999 - THE1C LTR MaLR 0 375 165 2085 115 28 3 chr21 2431571 2431859 -32475711 + AluSc SINE Alu 1 295 -14 1731 113 57 60 chr21 2431859 2431983 -32475587 - THE1C LTR MaLR -210 165 42 365 332 51 28 chr21 2431983 2432197 -32475373 + HERV3 LTR ERV1 996 1214 -7212 251 91 0 0 chr21 2432384 2432417 -32475153 - THE1C LTR MaLR -342 33 1 386 350 47 13 chr21 2432420 2432654 -32474916 + L1MC3 LINE L1 1623 1864 -4676 553 237 65 75 chr21 2432813 2433185 -32474385 + LTR15 LTR ERV1 112 479 -14 24697 269 36 41 chr21 2433198 2441974 -32465596 + HERV15 LTR ERV1 1 8731 -4 277 278 16 48 chr21 2442336 2442462 -32465108 + LTR15 LTR ERV1 358 479 -14 1471 83 29 19 chr21 2442466 2442671 -32464899 + AluSp SINE Alu 89 295 -18 334 286 53 0 chr21 2442678 2442811 -32464759 + L1M1 LINE L1 2869 3008 -4557 592 245 62 65 chr21 2442928 2443205 -32464365 + L1MC3 LINE L1 2258 2534 -4187 237 108 0 0 chr21 2443205 2443242 -32464328 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 1805 121 11 11 chr21 2443247 2443520 -32464050 - AluSc SINE Alu -36 273 1 592 245 62 65 chr21 2443520 2443607 -32463963 + L1MC3 LINE L1 2538 2627 -4094 2061 244 65 34 chr21 2443601 2444124 -32463446 + L1MC3 LINE L1 5786 6301 -259 1807 199 21 0 chr21 2444124 2444460 -32463110 - MER2 DNA MER2_type 0 344 2 2061 244 65 34 chr21 2444460 2444676 -32462894 + L1MC3 LINE L1 6301 6509 -51 362 257 148 35 chr21 2445464 2445666 -32461904 + L1ME LINE L1 5592 5816 -305 194 344 146 0 chr21 2446088 2446184 -32461386 + MIR SINE MIR 79 188 -74 23 33 0 0 chr21 2447237 2447267 -32460303 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 2447464 2447488 -32460082 + AT_rich Low_complexity Low_complexity 1 24 0 924 170 0 0 chr21 2447857 2448004 -32459566 + AluSg/x SINE Alu 133 279 -31 3942 253 38 26 chr21 2448436 2448604 -32458966 + L1M2 LINE L1 1067 1232 -5616 2061 101 0 0 chr21 2448604 2448881 -32458689 - AluY SINE Alu 0 311 35 3942 253 38 26 chr21 2448881 2449686 -32457884 + L1M2 LINE L1 1232 2177 -4671 204 97 0 0 chr21 2449686 2449717 -32457853 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3942 253 38 26 chr21 2449717 2450333 -32457237 + L1M2 LINE L1 2177 2784 -4064 9039 200 34 17 chr21 2450342 2451604 -32455966 + L1P5 LINE L1 3160 4475 -1681 1420 211 6 32 chr21 2451604 2451917 -32455653 + AluJo SINE Alu 1 305 -7 9039 200 34 17 chr21 2451917 2452903 -32454667 + L1P5 LINE L1 4475 5443 -713 4458 226 23 16 chr21 2452906 2453889 -32453681 + L1M1 LINE L1 15 1004 -6561 10683 152 20 23 chr21 2453898 2455754 -32451816 + L1M1 LINE L1 1118 2968 -4597 534 186 0 24 chr21 2455755 2455879 -32451691 + L1PB4 LINE L1 6034 6154 -2 25 0 0 0 chr21 2456187 2456212 -32451358 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 2456264 2456285 -32451285 + AT_rich Low_complexity Low_complexity 1 21 0 336 344 38 0 chr21 2456331 2456491 -32451079 - L1ME LINE L1 -303 5818 5653 904 286 26 0 chr21 2456500 2456734 -32450836 - MIR SINE MIR -5 257 18 1516 283 49 32 chr21 2457131 2458009 -32449561 - L2 LINE L2 0 3313 2424 36 40 0 0 chr21 2458036 2458086 -32449484 + AT_rich Low_complexity Low_complexity 1 50 0 1294 50 12 0 chr21 2459824 2459985 -32447585 + L1PA7 LINE L1 5988 6150 -4 214 210 42 28 chr21 2460099 2460151 -32447419 + (TA)n Simple_repeat Simple_repeat 2 52 -94 1763 171 3 3 chr21 2460151 2460449 -32447121 - AluJb SINE Alu -14 298 1 214 210 42 28 chr21 2460449 2460539 -32447031 + (TA)n Simple_repeat Simple_repeat 52 146 0 25 31 0 0 chr21 2461132 2461164 -32446406 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr21 2462601 2462622 -32444948 + AT_rich Low_complexity Low_complexity 1 21 0 485 237 15 15 chr21 2462949 2463084 -32444486 - MIR SINE MIR -54 208 74 423 216 0 0 chr21 2463236 2463347 -32444223 + GA-rich Low_complexity Low_complexity 6 116 0 2243 115 7 0 chr21 2464438 2464742 -32442828 - AluSg SINE Alu -4 306 1 202 422 0 10 chr21 2464747 2464849 -32442721 + L2 LINE L2 2866 2966 -306 437 249 30 61 chr21 2465003 2465168 -32442402 + L2 LINE L2 3152 3311 -2 304 292 75 20 chr21 2465181 2465328 -32442242 + L2 LINE L2 3159 3313 0 1686 170 23 45 chr21 2466088 2466441 -32441129 + MER7A DNA MER2_type 4 346 0 1920 156 30 24 chr21 2466723 2467096 -32440474 - THE1C LTR MaLR 0 375 1 5141 120 8 5 chr21 2467096 2467848 -32439722 - THE1C-int LTR MaLR 0 1580 827 754 126 55 16 chr21 2467853 2467980 -32439590 - THE1C LTR MaLR -243 132 1 1549 108 0 9 chr21 2469737 2469997 -32437573 - AluSc SINE Alu 0 326 69 208 325 25 12 chr21 2470060 2470140 -32437430 + MIR3 SINE MIR 127 207 -1 218 217 0 0 chr21 2470406 2470452 -32437118 + (TA)n Simple_repeat Simple_repeat 1 46 0 395 339 81 18 chr21 2471170 2471391 -32436179 + L1MD2 LINE L1 456 690 -5840 22 0 0 0 chr21 2471771 2471793 -32435777 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 2472210 2472238 -32435332 + AT_rich Low_complexity Low_complexity 1 28 0 2921 227 69 46 chr21 2472489 2472801 -32434769 + L1MD2 LINE L1 983 1286 -5254 229 171 0 0 chr21 2472801 2472836 -32434734 + tRNA-Arg-AGA tRNA tRNA 1 35 -41 2921 227 69 46 chr21 2472836 2473656 -32433914 + L1MD2 LINE L1 1286 2176 -4364 1783 221 18 72 chr21 2473793 2474308 -32433262 + MLT1D LTR MaLR 19 505 0 1541 285 27 17 chr21 2474309 2474895 -32432675 + MLT1D-int LTR MaLR 2 593 -778 587 307 26 54 chr21 2475408 2475721 -32431849 + MLT1D-int LTR MaLR 1335 1638 -97 1538 256 44 51 chr21 2475799 2478927 -32428643 + L1MD2 LINE L1 3056 6182 -571 359 163 51 19 chr21 2478927 2479141 -32428429 + (TA)n Simple_repeat Simple_repeat 1 221 0 482 112 62 0 chr21 2479153 2479313 -32428257 + (TA)n Simple_repeat Simple_repeat 2 171 0 366 167 55 12 chr21 2479313 2479571 -32427999 + (TATAA)n Simple_repeat Simple_repeat 1 269 0 435 187 37 22 chr21 2479618 2479719 -32427851 - L1MD1 LINE L1 -280 5884 5780 228 83 28 0 chr21 2479783 2479819 -32427751 + L1P5 LINE L1 5783 5819 -332 850 160 22 33 chr21 2479789 2479970 -32427600 + L1MD2 LINE L1 5790 5968 -274 1144 248 50 24 chr21 2479974 2480313 -32427257 + L1MD2 LINE L1 6405 6752 -1 28 48 0 0 chr21 2480702 2480744 -32426826 + AT_rich Low_complexity Low_complexity 1 42 0 380 207 47 30 chr21 2481591 2481760 -32425810 + (TA)n Simple_repeat Simple_repeat 2 173 0 22 70 0 0 chr21 2481762 2481805 -32425765 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr21 2483787 2483814 -32423756 + AT_rich Low_complexity Low_complexity 1 27 0 43683 40 1 2 chr21 2484385 2490542 -32417028 + L1PA3 LINE L1 1 6152 -3 482 314 48 31 chr21 2490552 2490842 -32416728 - L2 LINE L2 -74 3239 2945 252 0 0 0 chr21 2492206 2492234 -32415336 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 2002 107 4 4 chr21 2492237 2492517 -32415053 - AluSg SINE Alu -30 280 1 987 273 52 11 chr21 2492543 2492924 -32414646 - L1ME3A LINE L1 -200 5970 5574 2476 44 7 0 chr21 2493562 2493860 -32413710 + AluY SINE Alu 1 300 -11 36 0 0 0 chr21 2493870 2493906 -32413664 + AT_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr21 2494174 2494225 -32413345 + AT_rich Low_complexity Low_complexity 1 51 0 936 70 0 0 chr21 2494454 2494582 -32412988 - L1PA5 LINE L1 0 6154 6027 390 258 16 23 chr21 2494589 2494717 -32412853 - L1MEd LINE L1 -3393 2736 2610 421 328 55 5 chr21 2494718 2494919 -32412651 - L1MEd LINE L1 -3596 2533 2323 274 77 0 0 chr21 2496283 2496322 -32411248 + MADE1 DNA Mariner 42 80 0 327 289 96 54 chr21 2496325 2496585 -32410985 - L1MEd LINE L1 -5286 833 563 3709 70 25 4 chr21 2497244 2498215 -32409355 + MER11A LTR ERVK 1 1266 0 412 285 39 8 chr21 2498705 2498835 -32408735 + MIR SINE MIR 122 255 -7 1463 0 0 6 chr21 2500221 2500395 -32407175 + L1P LINE L1 4334 4506 -1640 8173 31 0 0 chr21 2500395 2502152 -32405418 + L1PA4 LINE L1 4382 6152 -3 22 0 0 0 chr21 2502152 2502174 -32405396 + AT_rich Low_complexity Low_complexity 1 22 0 2062 110 3 20 chr21 2503261 2503561 -32404009 + AluSx SINE Alu 1 295 -17 24 0 0 0 chr21 2503601 2503625 -32403945 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr21 2503913 2503965 -32403605 + AT_rich Low_complexity Low_complexity 1 52 0 226 270 95 58 chr21 2504167 2504273 -32403297 - MIR SINE MIR -98 164 50 2156 153 0 21 chr21 2504273 2504646 -32402924 + MLT1A1 LTR MaLR 1 365 0 226 270 95 58 chr21 2504646 2504676 -32402894 - MIR SINE MIR -212 50 23 486 316 70 9 chr21 2505406 2505621 -32401949 - MIR SINE MIR 0 262 35 2148 102 0 0 chr21 2505971 2506256 -32401314 + AluSx SINE Alu 21 305 -7 27 73 0 0 chr21 2506429 2506484 -32401086 + AT_rich Low_complexity Low_complexity 1 55 0 187 234 21 0 chr21 2507200 2507247 -32400323 - L2 LINE L2 -9 3263 3216 34 42 0 0 chr21 2507528 2507576 -32399994 + AT_rich Low_complexity Low_complexity 1 48 0 214 196 20 0 chr21 2507806 2507857 -32399713 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 241 308 23 23 chr21 2508038 2508171 -32399399 + L1ME LINE L1 5529 5661 -460 2495 50 0 0 chr21 2508762 2509064 -32398506 + AluYa8 SINE Alu 1 302 -8 22 35 0 0 chr21 2509169 2509198 -32398372 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr21 2509737 2509762 -32397808 + AT_rich Low_complexity Low_complexity 1 25 0 2097 121 3 0 chr21 2509852 2510149 -32397421 + AluSx SINE Alu 5 302 -10 2039 231 36 26 chr21 2510250 2511311 -32396259 + L1M4c LINE L1 1506 2624 -869 4221 184 25 38 chr21 2511316 2512509 -32395061 + L1MB3 LINE L1 5015 6183 0 367 289 47 13 chr21 2513218 2513367 -32394203 + L1ME1 LINE L1 5045 5198 -948 2053 251 70 47 chr21 2513447 2514211 -32393359 + L1ME1 LINE L1 5318 6104 -62 1522 201 10 7 chr21 2514211 2514510 -32393060 + AluJo SINE Alu 1 300 -12 2053 251 70 47 chr21 2514510 2514571 -32392999 + L1ME1 LINE L1 6104 6162 -4 231 36 0 0 chr21 2514693 2514721 -32392849 + (CA)n Simple_repeat Simple_repeat 2 29 0 41 48 0 0 chr21 2514807 2514869 -32392701 + AT_rich Low_complexity Low_complexity 1 62 0 19509 184 19 16 chr21 2515022 2519101 -32388469 + L1PA11 LINE L1 1220 5309 -837 13571 32 0 18 chr21 2519101 2521528 -32386042 + L1PA4 LINE L1 3736 6153 -2 1898 124 14 0 chr21 2521529 2521812 -32385758 + L1PA11 LINE L1 5769 6055 -119 201 167 15 30 chr21 2521990 2522056 -32385514 + A-rich Low_complexity Low_complexity 5 69 0 345 323 62 16 chr21 2522673 2522865 -32384705 + L1MC/D LINE L1 5254 5454 -2354 405 226 85 67 chr21 2523868 2524032 -32383538 + MIR3 SINE MIR 33 199 -9 1352 128 56 12 chr21 2524859 2525108 -32382462 + L1MA5A LINE L1 6030 6289 -8 191 283 19 0 chr21 2525288 2525341 -32382229 - MER5A DNA MER1_type -45 144 91 276 256 89 0 chr21 2525905 2525995 -32381575 + MER5A DNA MER1_type 9 106 -83 1193 199 23 23 chr21 2526163 2526429 -32381141 + MER58B DNA MER1_type 59 324 -17 1766 163 7 0 chr21 2526441 2526730 -32380840 + AluJb SINE Alu 6 296 -16 180 152 0 0 chr21 2528277 2528310 -32379260 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 57 0 0 chr21 2528426 2528461 -32379109 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 2529089 2529118 -32378452 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 2529243 2529272 -32378298 + AT_rich Low_complexity Low_complexity 1 29 0 206 32 32 0 chr21 2530085 2530116 -32377454 + (ATG)n Simple_repeat Simple_repeat 2 33 0 225 180 100 0 chr21 2530118 2530168 -32377402 - MIR SINE MIR -10 252 198 183 42 0 0 chr21 2530631 2530655 -32376915 + (TA)n Simple_repeat Simple_repeat 2 25 0 24 32 0 0 chr21 2530758 2530789 -32376781 + AT_rich Low_complexity Low_complexity 1 31 0 435 38 0 0 chr21 2530952 2531005 -32376565 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 244 282 26 13 chr21 2531016 2531094 -32376476 - L2 LINE L2 -1 3312 3234 2267 99 3 0 chr21 2531355 2531649 -32375921 + AluSq SINE Alu 1 295 -18 247 234 16 0 chr21 2531688 2531752 -32375818 + (TA)n Simple_repeat Simple_repeat 2 66 0 266 330 61 9 chr21 2532669 2532784 -32374786 - MIR3 SINE MIR -48 160 40 24 53 0 0 chr21 2533738 2533776 -32373794 + GC_rich Low_complexity Low_complexity 1 38 0 333 344 51 0 chr21 2534750 2534948 -32372622 + MIR SINE MIR 19 229 -33 22 0 0 0 chr21 2535631 2535653 -32371917 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 2536559 2536583 -32370987 + AT_rich Low_complexity Low_complexity 1 24 0 351 22 22 0 chr21 2538288 2538334 -32369236 + MADE1 DNA Mariner 1 47 -33 201 343 76 35 chr21 2539072 2539244 -32368326 - MIR SINE MIR -46 216 38 250 226 0 40 chr21 2539860 2539984 -32367586 + (TA)n Simple_repeat Simple_repeat 1 119 0 214 306 0 20 chr21 2540300 2540349 -32367221 + MIR SINE MIR 34 81 -181 1378 201 51 0 chr21 2541048 2541302 -32366268 - MLT1C LTR MaLR 0 467 201 1142 186 43 125 chr21 2541310 2541686 -32365884 + MSTD LTR MaLR 1 345 -51 268 51 26 0 chr21 2541733 2541772 -32365798 + MSTD LTR MaLR 389 428 0 1167 149 10 5 chr21 2541772 2541966 -32365604 - MLT1C LTR MaLR -272 195 1 1613 158 56 11 chr21 2542506 2542790 -32364780 + AluSx SINE Alu 1 297 -15 341 316 51 0 chr21 2543111 2543228 -32364342 - MIR SINE MIR -69 139 17 262 130 0 87 chr21 2543591 2543660 -32363910 + MER3 DNA MER1_type 112 122 -87 1504 177 49 14 chr21 2543658 2544003 -32363567 + MER3 DNA MER1_type 2235 2591 0 2202 120 0 3 chr21 2544003 2544312 -32363258 + AluSx SINE Alu 1 308 -4 26 30 0 0 chr21 2545989 2546022 -32361548 + AT_rich Low_complexity Low_complexity 1 33 0 1819 141 25 40 chr21 2546156 2546510 -32361060 + THE1C LTR MaLR 1 349 -26 1021 94 13 0 chr21 2546525 2546674 -32360896 + THE1C-int LTR MaLR 6 156 -1424 9767 109 17 31 chr21 2546671 2548177 -32359393 + THE1C-int LTR MaLR 97 1580 0 2073 127 29 35 chr21 2548177 2548554 -32359016 + THE1C LTR MaLR 1 375 0 213 350 80 0 chr21 2549598 2549698 -32357872 + L2 LINE L2 2271 2378 -936 331 274 62 58 chr21 2551674 2551900 -32355670 - L2 LINE L2 -55 3258 3032 185 283 120 11 chr21 2551939 2552031 -32355539 - L2 LINE L2 -454 2860 2759 2275 301 59 19 chr21 2552047 2552727 -32354843 - L2 LINE L2 -662 2652 1924 1876 147 7 3 chr21 2552727 2553019 -32354551 + AluSx SINE Alu 1 293 -19 2275 301 59 19 chr21 2553019 2553250 -32354320 - L2 LINE L2 -1390 1924 1704 21 36 0 0 chr21 2553684 2553712 -32353858 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr21 2555492 2555519 -32352051 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 422 320 73 32 chr21 2557421 2557790 -32349780 - L1M4 LINE L1 -808 5338 4955 1795 189 22 38 chr21 2558931 2559302 -32348268 + MLT1A1 LTR MaLR 1 365 0 2737 144 31 54 chr21 2559850 2560406 -32347164 + L1MA7 LINE L1 5720 6262 -29 751 305 8 13 chr21 2560638 2560877 -32346693 + MLT2F LTR ERVL 179 416 -247 342 0 0 0 chr21 2560891 2560929 -32346641 + (TG)n Simple_repeat Simple_repeat 2 39 0 471 116 0 0 chr21 2561664 2561733 -32345837 - LTR1B LTR ERV1 0 826 758 1081 300 48 31 chr21 2562182 2562595 -32344975 + MLT1H1 LTR MaLR 9 428 -127 1521 307 63 13 chr21 2563835 2564308 -32343262 + L2 LINE L2 20 516 -2798 955 256 29 18 chr21 2564362 2564643 -32342927 + L2 LINE L2 609 892 -2422 2527 133 41 7 chr21 2565252 2565666 -32341904 - MSTA LTR MaLR 0 428 1 856 95 119 12 chr21 2566636 2566837 -32340733 + MER11B LTR ERVK 1 317 -949 336 118 0 0 chr21 2567041 2567092 -32340478 + MER11B LTR ERVK 309 359 -877 4115 155 92 30 chr21 2567068 2567966 -32339604 + MER11A LTR ERVK 308 1261 -5 1468 105 38 0 chr21 2568463 2568672 -32338898 - AluSg/x SINE Alu -13 297 81 1893 143 20 31 chr21 2570294 2570644 -32336926 - MER7A DNA MER2_type 0 346 3 450 0 0 0 chr21 2571736 2571786 -32335784 + (TG)n Simple_repeat Simple_repeat 2 51 0 250 207 17 17 chr21 2572203 2572261 -32335309 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 929 174 69 21 chr21 2572728 2573063 -32334507 - L1MC/D LINE L1 -745 5401 5140 4558 113 12 1 chr21 2573070 2573754 -32333816 - L1PA11 LINE L1 -3 6171 5481 602 159 0 0 chr21 2573756 2573863 -32333707 - L1 LINE L1 -1293 4853 4747 2537 28 0 0 chr21 2574166 2574451 -32333119 - AluY SINE Alu -19 292 8 476 73 0 12 chr21 2574663 2574745 -32332825 - L1PB1 LINE L1 -1 6150 6070 296 226 28 23 chr21 2574764 2574941 -32332629 + (TA)n Simple_repeat Simple_repeat 2 179 0 260 201 0 0 chr21 2574975 2575035 -32332535 + MLT2C2 LTR ERVL 417 463 -1 611 239 0 0 chr21 2575127 2575257 -32332313 - LTR16A LTR ERVL -5 445 316 2103 111 6 22 chr21 2575582 2575898 -32331672 - AluSq SINE Alu -2 311 1 1113 160 0 57 chr21 2576304 2576516 -32331054 + AluJb SINE Alu 110 309 -3 594 286 17 36 chr21 2576527 2576939 -32330631 + L1M4 LINE L1 2215 2618 -3528 868 248 22 13 chr21 2577254 2577480 -32330090 + ERVL LTR ERVL 4862 5089 -675 506 284 120 27 chr21 2578149 2578374 -32329196 + MIR SINE MIR 7 252 -10 23 33 0 0 chr21 2578715 2578745 -32328825 + AT_rich Low_complexity Low_complexity 1 30 0 1437 180 41 35 chr21 2578957 2579284 -32328286 + MER61B LTR ERV1 1 423 -2 512 224 33 20 chr21 2581223 2581375 -32326195 - MER104 DNA MER2_type -6 1889 1736 302 259 12 12 chr21 2581412 2581493 -32326077 - MER104 DNA MER2_type -557 1338 1258 531 248 80 24 chr21 2581543 2581793 -32325777 + MER34 LTR ERV1 1 344 -380 265 228 63 87 chr21 2581921 2582127 -32325443 + MER34 LTR ERV1 337 537 -5 541 292 57 50 chr21 2582134 2582415 -32325155 + L2 LINE L2 3031 3313 0 2176 126 103 5 chr21 2583287 2583676 -32323894 + MSTA LTR MaLR 1 427 -1 223 357 97 38 chr21 2583719 2583904 -32323666 + L2 LINE L2 3118 3313 0 190 320 96 51 chr21 2584129 2584326 -32323244 + MIR3 SINE MIR 2 207 -1 217 284 23 57 chr21 2585367 2585455 -32322115 - MIR SINE MIR -131 131 47 445 212 76 0 chr21 2585640 2585700 -32321870 - L1ME4a LINE L1 -1 6120 6066 225 0 0 0 chr21 2585700 2585725 -32321845 + (TA)n Simple_repeat Simple_repeat 1 25 0 445 212 76 0 chr21 2585725 2585782 -32321788 - L1ME4a LINE L1 -55 6066 5994 23 33 0 0 chr21 2585850 2585880 -32321690 + AT_rich Low_complexity Low_complexity 1 30 0 2158 209 56 47 chr21 2585880 2586580 -32320990 + Charlie1 DNA MER1_type 2052 2757 -4 2248 104 3 3 chr21 2586600 2586907 -32320663 + AluSc SINE Alu 1 307 -2 640 220 122 109 chr21 2587470 2587546 -32320024 + MSTD LTR MaLR 6 80 -316 2233 115 0 0 chr21 2587546 2587851 -32319719 - AluSg SINE Alu -5 305 1 640 220 122 109 chr21 2587851 2588160 -32319410 + MSTD LTR MaLR 80 396 0 284 158 18 0 chr21 2588623 2588680 -32318890 + (TA)n Simple_repeat Simple_repeat 1 58 0 321 150 33 0 chr21 2588681 2588741 -32318829 - Charlie1 DNA MER1_type -619 2142 2081 21 0 0 0 chr21 2592583 2592604 -32314966 + AT_rich Low_complexity Low_complexity 1 21 0 831 173 0 19 chr21 2593015 2593217 -32314353 + AluJb SINE Alu 2 291 -21 2000 139 0 0 chr21 2594090 2594385 -32313185 + AluSx SINE Alu 3 297 -15 973 246 73 26 chr21 2595531 2595894 -32311676 - MLT1H LTR MaLR -167 388 1 188 67 33 0 chr21 2596772 2596802 -32310768 + (CATATA)n Simple_repeat Simple_repeat 5 35 0 299 130 19 0 chr21 2596886 2596940 -32310630 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 27 29 0 0 chr21 2597192 2597226 -32310344 + AT_rich Low_complexity Low_complexity 1 34 0 615 335 62 56 chr21 2598518 2598605 -32308965 - L2 LINE L2 -908 2406 2321 6780 106 5 9 chr21 2598605 2599578 -32307992 - LTR5 LTR ERVK 0 969 1 615 335 62 56 chr21 2599578 2600025 -32307545 - L2 LINE L2 -993 2321 1869 2239 83 0 10 chr21 2600322 2600635 -32306935 + AluY SINE Alu 1 310 -1 24 0 0 0 chr21 2600690 2600714 -32306856 + AT_rich Low_complexity Low_complexity 1 24 0 1940 62 0 12 chr21 2601554 2601823 -32305747 - AluY SINE Alu 0 306 41 2504 105 22 8 chr21 2602065 2602435 -32305135 - THE1C LTR MaLR 0 375 1 1949 147 0 0 chr21 2603768 2604067 -32303503 + AluSx SINE Alu 1 299 -13 417 291 116 48 chr21 2604123 2604374 -32303196 - MLT1L LTR MaLR -227 388 121 1856 178 127 69 chr21 2606447 2606937 -32300633 - MLT2B1 LTR ERVL -2 518 1 555 297 30 6 chr21 2606945 2607110 -32300460 - MIR SINE MIR -70 192 24 210 91 0 0 chr21 2607179 2607212 -32300358 + (CA)n Simple_repeat Simple_repeat 2 34 0 1680 286 60 17 chr21 2607579 2608408 -32299162 - L2 LINE L2 -4 3309 2444 216 0 0 0 chr21 2609122 2609146 -32298424 + (TG)n Simple_repeat Simple_repeat 2 25 0 204 40 0 0 chr21 2609601 2609626 -32297944 + (TC)n Simple_repeat Simple_repeat 2 26 0 216 0 0 0 chr21 2610200 2610224 -32297346 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 1918 153 13 0 chr21 2610829 2611142 -32296428 + L1MC1 LINE L1 5997 6313 -20 1947 187 66 43 chr21 2611156 2611743 -32295827 - MER39 LTR ERV1 0 707 1 1860 161 38 16 chr21 2612150 2612517 -32295053 - THE1C LTR MaLR 0 375 1 2257 124 4 29 chr21 2612751 2612890 -32294680 + L1PB4 LINE L1 5658 5799 -357 444 118 0 0 chr21 2612890 2612958 -32294612 + (CA)n Simple_repeat Simple_repeat 2 69 0 2257 124 4 29 chr21 2612958 2613269 -32294301 + L1PB4 LINE L1 5799 6156 0 932 183 35 25 chr21 2613344 2613541 -32294029 + MER3 DNA MER1_type 2 200 -9 592 71 0 0 chr21 2614732 2614902 -32292668 - AluY SINE Alu 0 311 210 234 32 0 0 chr21 2614902 2614933 -32292637 - AluY SINE Alu -101 32 2 1542 200 16 16 chr21 2615316 2615681 -32291889 - L1MB1 LINE L1 -1 6167 5803 21 0 0 0 chr21 2616021 2616042 -32291528 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr21 2616421 2616447 -32291123 + AT_rich Low_complexity Low_complexity 1 26 0 2642 101 11 0 chr21 2616473 2616850 -32290720 - L1PA11 LINE L1 0 6174 5794 372 326 61 0 chr21 2617476 2617623 -32289947 - L2 LINE L2 0 3313 3158 2291 97 7 0 chr21 2618754 2619064 -32288506 + AluSp SINE Alu 1 312 -1 21 71 0 0 chr21 2619234 2619276 -32288294 + AT_rich Low_complexity Low_complexity 1 42 0 21 82 0 0 chr21 2619465 2619514 -32288056 + AT_rich Low_complexity Low_complexity 1 49 0 1685 229 22 6 chr21 2620559 2620940 -32286630 - MLT2D LTR ERVL -20 444 5 2110 103 3 0 chr21 2620943 2621277 -32286293 + AluSp SINE Alu 1 335 0 260 70 23 0 chr21 2621788 2621831 -32285739 + (TG)n Simple_repeat Simple_repeat 1 44 0 232 247 164 0 chr21 2622411 2622484 -32285086 - MIR SINE MIR -6 256 172 211 136 68 0 chr21 2623568 2623612 -32283958 + T-rich Low_complexity Low_complexity 5 51 0 2155 163 25 17 chr21 2624898 2625724 -32281846 + L1MA9 LINE L1 5434 6312 0 22 0 0 0 chr21 2627804 2627826 -32279744 + AT_rich Low_complexity Low_complexity 1 22 0 339 319 88 0 chr21 2627841 2627954 -32279616 - L2 LINE L2 -9 3263 3141 405 272 19 38 chr21 2629733 2629891 -32277679 + LTR16A LTR ERVL 220 374 -76 2228 140 20 43 chr21 2629923 2630322 -32277248 + MLT1B LTR MaLR 1 390 0 33 43 0 0 chr21 2630456 2630503 -32277067 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr21 2630889 2630911 -32276659 + AT_rich Low_complexity Low_complexity 1 22 0 183 297 139 77 chr21 2632373 2632582 -32274988 - L2 LINE L2 -107 3165 2944 218 342 38 13 chr21 2633070 2633149 -32274421 + L2 LINE L2 3184 3264 -8 29 0 0 0 chr21 2634349 2634378 -32273192 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 2634655 2634685 -32272885 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr21 2635633 2635656 -32271914 + AT_rich Low_complexity Low_complexity 1 23 0 225 301 12 60 chr21 2636533 2636616 -32270954 + L2 LINE L2 3235 3313 0 732 333 64 6 chr21 2637648 2637990 -32269580 + MER115 DNA AcHobo 332 693 0 2755 189 22 15 chr21 2638254 2638800 -32268770 - MER44D DNA MER2_type 0 605 1 2571 34 0 3 chr21 2639307 2639602 -32267968 - AluY SINE Alu -17 294 1 198 317 156 60 chr21 2639689 2639856 -32267714 - MIR SINE MIR -69 193 11 34 24 0 0 chr21 2640123 2640164 -32267406 + AT_rich Low_complexity Low_complexity 1 41 0 442 260 44 55 chr21 2640531 2640712 -32266858 + MIR SINE MIR 77 255 -7 787 116 18 24 chr21 2641688 2641852 -32265718 + GA-rich Low_complexity Low_complexity 4 166 0 2167 122 3 0 chr21 2642057 2642353 -32265217 + AluSx SINE Alu 1 297 -15 2418 274 62 26 chr21 2642637 2643767 -32263803 + L2 LINE L2 2138 3313 0 22 70 0 0 chr21 2644208 2644251 -32263319 + AT_rich Low_complexity Low_complexity 1 43 0 607 219 8 8 chr21 2644278 2644462 -32263108 + FLAM_A SINE Alu 1 184 0 345 100 0 0 chr21 2644465 2644515 -32263055 + (GGGGA)n Simple_repeat Simple_repeat 4 53 0 28352 113 15 12 chr21 2644527 2649973 -32257597 + L1P3 LINE L1 7 5476 -985 234 0 0 0 chr21 2649980 2650006 -32257564 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 783 136 28 11 chr21 2650007 2650183 -32257387 + GA-rich Low_complexity Low_complexity 1 179 0 1897 155 0 0 chr21 2650548 2650826 -32256744 + AluSx SINE Alu 1 278 -34 221 130 14 58 chr21 2652416 2652485 -32255085 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 256 148 33 0 chr21 2652597 2652658 -32254912 + CT-rich Low_complexity Low_complexity 5 67 0 710 278 70 25 chr21 2652893 2653249 -32254321 - L2 LINE L2 -1001 2313 1942 210 71 0 0 chr21 2653420 2653448 -32254122 + (TTG)n Simple_repeat Simple_repeat 2 29 0 380 275 22 0 chr21 2654039 2654130 -32253440 + MER81 DNA DNA 20 112 -2 194 323 21 11 chr21 2655201 2655294 -32252276 - MIR SINE MIR -68 140 47 284 254 56 0 chr21 2655884 2655955 -32251615 - MIR SINE MIR -71 191 117 363 265 0 12 chr21 2657100 2657183 -32250387 + MIR3 SINE MIR 113 194 -14 356 218 0 0 chr21 2657467 2657545 -32250025 + MER116 DNA Mariner 3 80 0 397 253 0 0 chr21 2657939 2658022 -32249548 - MER103 DNA DNA -78 88 6 26 30 0 0 chr21 2659227 2659260 -32248310 + AT_rich Low_complexity Low_complexity 1 33 0 257 254 151 30 chr21 2660631 2660863 -32246707 + HAL1 LINE L1 995 1254 -1253 2377 90 0 0 chr21 2660902 2661212 -32246358 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 2661692 2661715 -32245855 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 253 340 62 19 chr21 2661825 2661987 -32245583 - MLT1K LTR MaLR -46 542 374 2317 80 3 0 chr21 2663283 2663572 -32243998 + AluSp SINE Alu 1 290 -23 278 105 0 0 chr21 2663572 2663610 -32243960 + (GGAA)n Simple_repeat Simple_repeat 1 38 0 593 141 39 19 chr21 2663610 2663766 -32243804 + GA-rich Low_complexity Low_complexity 1 159 0 1245 206 35 16 chr21 2663924 2664240 -32243330 - MER33 DNA MER1_type -1 323 2 1818 138 46 3 chr21 2664801 2665083 -32242487 + AluSg SINE Alu 1 294 -16 394 270 9 0 chr21 2666217 2666328 -32241242 - LTR16B LTR ERVL -352 112 1 21 0 0 0 chr21 2667290 2667311 -32240259 + AT_rich Low_complexity Low_complexity 1 21 0 267 294 118 8 chr21 2667942 2668061 -32239509 + MIR3 SINE MIR 30 161 -47 416 279 27 9 chr21 2668093 2668204 -32239366 + MER5A DNA MER1_type 77 189 0 358 328 34 6 chr21 2668545 2668722 -32238848 + Charlie8 DNA MER1_type 100 281 -2136 27 29 0 0 chr21 2668794 2668828 -32238742 + AT_rich Low_complexity Low_complexity 1 34 0 1881 144 7 17 chr21 2669018 2669317 -32238253 - AluSx SINE Alu -16 296 1 1698 197 32 91 chr21 2669351 2669442 -32238128 - MLT1C LTR MaLR -3 464 369 186 43 0 0 chr21 2669442 2669465 -32238105 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 1421 156 3 122 chr21 2669467 2669662 -32237908 - AluJo SINE Alu -19 283 139 230 0 33 0 chr21 2669662 2669692 -32237878 + (TA)n Simple_repeat Simple_repeat 2 32 0 1421 156 3 122 chr21 2669692 2669817 -32237753 - AluJo SINE Alu -163 139 1 1698 197 32 91 chr21 2669817 2670215 -32237355 - MLT1C LTR MaLR -99 368 1 22 35 0 0 chr21 2670642 2670671 -32236899 + AT_rich Low_complexity Low_complexity 1 29 0 371 167 60 0 chr21 2671912 2671996 -32235574 - MER46C DNA MER2_type -11 327 239 447 270 15 0 chr21 2672033 2672170 -32235400 - MER46C DNA MER2_type -176 162 24 23 54 0 0 chr21 2672622 2672659 -32234911 + AT_rich Low_complexity Low_complexity 1 37 0 1424 200 70 0 chr21 2672820 2672916 -32234654 + AluJo SINE Alu 22 110 -202 615 14 0 0 chr21 2672916 2672988 -32234582 + (GAAA)n Simple_repeat Simple_repeat 2 73 0 1424 200 70 0 chr21 2672988 2673161 -32234409 + AluJo SINE Alu 110 310 -2 24 77 0 0 chr21 2673329 2673381 -32234189 + AT_rich Low_complexity Low_complexity 1 52 0 21 82 0 0 chr21 2674243 2674292 -32233278 + AT_rich Low_complexity Low_complexity 1 49 0 326 231 134 15 chr21 2674612 2674746 -32232824 + L2 LINE L2 1932 2081 -1233 325 262 126 10 chr21 2675001 2675104 -32232466 + L2 LINE L2 3199 3313 0 354 315 27 27 chr21 2675783 2675967 -32231603 + L1ME4a LINE L1 5750 5933 -188 2219 112 0 0 chr21 2677511 2677806 -32229764 + AluSx SINE Alu 3 297 -15 514 320 64 30 chr21 2679052 2679378 -32228192 + L2 LINE L2 2794 3138 -175 204 208 62 104 chr21 2679438 2679534 -32228036 + L2 LINE L2 3149 3240 -73 24 0 0 0 chr21 2679670 2679694 -32227876 + AT_rich Low_complexity Low_complexity 1 24 0 2250 78 0 0 chr21 2680583 2680908 -32226662 - AluSq SINE Alu 0 325 1 1348 199 16 51 chr21 2681327 2681638 -32225932 + AluJo SINE Alu 1 300 -12 24 77 0 0 chr21 2681735 2681787 -32225783 + AT_rich Low_complexity Low_complexity 1 52 0 1048 233 75 49 chr21 2682397 2682783 -32224787 + L1ME3A LINE L1 5751 6146 -24 21 57 0 0 chr21 2682874 2682909 -32224661 + AT_rich Low_complexity Low_complexity 1 35 0 247 281 74 37 chr21 2683182 2683317 -32224253 - MIR SINE MIR -15 247 108 378 149 0 15 chr21 2683538 2683605 -32223965 - MER116 DNA Mariner 0 80 15 413 287 8 8 chr21 2683859 2683981 -32223589 + MIR SINE MIR 141 262 0 2126 133 0 0 chr21 2684050 2684343 -32223227 - AluSx SINE Alu -17 295 3 1844 112 89 0 chr21 2684351 2684620 -32222950 - AluY SINE Alu -14 297 5 506 209 9 9 chr21 2685620 2685735 -32221835 - L1MEc LINE L1 -6246 150 36 522 297 79 55 chr21 2685846 2686263 -32221307 - MLT1J LTR MaLR -84 427 1 226 135 58 0 chr21 2686454 2686506 -32221064 + (CATATA)n Simple_repeat Simple_repeat 4 58 0 1961 131 7 0 chr21 2686823 2687105 -32220465 + AluSx SINE Alu 1 284 -28 644 272 61 35 chr21 2687413 2687641 -32219929 + MIR SINE MIR 12 245 -17 501 238 56 12 chr21 2687779 2687939 -32219631 - MLT1E LTR MaLR -128 414 248 513 248 55 88 chr21 2687994 2688232 -32219338 - MLT1E LTR MaLR -312 230 1 220 209 0 0 chr21 2691979 2692022 -32215548 + (TATG)n Simple_repeat Simple_repeat 2 44 0 803 164 0 0 chr21 2692114 2692236 -32215334 + FLAM_C SINE Alu 2 123 -20 25 0 0 0 chr21 2692242 2692267 -32215303 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 2692330 2692351 -32215219 + AT_rich Low_complexity Low_complexity 1 21 0 1071 68 0 0 chr21 2693165 2693297 -32214273 - AluY SINE Alu -179 132 1 2117 50 0 8 chr21 2693840 2694101 -32213469 + AluY SINE Alu 46 304 -7 566 323 41 41 chr21 2694332 2694623 -32212947 + L2 LINE L2 2861 3151 -162 1083 239 5 5 chr21 2694630 2694843 -32212727 + MER20 DNA MER1_type 1 213 -6 192 295 0 39 chr21 2694852 2694930 -32212640 + L2 LINE L2 3158 3232 -81 1988 160 48 34 chr21 2695196 2695738 -32211832 + MLT2A2 LTR ERVL 3 554 0 224 228 0 0 chr21 2696095 2696152 -32211418 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2223 120 0 0 chr21 2696284 2696583 -32210987 - AluSg SINE Alu -11 299 1 1462 108 25 0 chr21 2697489 2697693 -32209877 + AluSg/x SINE Alu 89 297 -13 24 32 0 0 chr21 2698102 2698133 -32209437 + AT_rich Low_complexity Low_complexity 1 31 0 398 278 100 0 chr21 2698185 2698365 -32209205 + L1ME LINE L1 5507 5704 -417 369 326 105 11 chr21 2698577 2698758 -32208812 + MLT1L LTR MaLR 350 547 -68 216 238 298 0 chr21 2699903 2699987 -32207583 + L2 LINE L2 3196 3304 -9 198 118 0 0 chr21 2701576 2701610 -32205960 + (CAAAAA)n Simple_repeat Simple_repeat 2 35 0 247 239 57 57 chr21 2702293 2702381 -32205189 + MLT1L LTR MaLR 1 88 -527 1307 238 99 31 chr21 2702438 2702955 -32204615 - MLT1E2 LTR MaLR 0 626 52 479 242 42 124 chr21 2703305 2703636 -32203934 - L1MC5 LINE L1 -974 6987 6684 617 237 0 0 chr21 2703856 2703991 -32203579 + FLAM_A SINE Alu 8 142 0 24 53 0 0 chr21 2704120 2704158 -32203412 + AT_rich Low_complexity Low_complexity 1 38 0 1923 219 19 17 chr21 2704558 2705023 -32202547 + MLT1C LTR MaLR 1 466 -1 1122 251 79 32 chr21 2705518 2706280 -32201290 + L1M4 LINE L1 4958 5769 -415 1190 261 80 27 chr21 2706312 2706725 -32200845 + L1ME1 LINE L1 5661 6095 -71 300 221 13 0 chr21 2706765 2706842 -32200728 + L1ME1 LINE L1 6084 6161 -5 1177 248 40 10 chr21 2707256 2707652 -32199918 - L1M3d LINE L1 -3218 2997 2590 324 0 0 0 chr21 2707662 2707698 -32199872 + (TG)n Simple_repeat Simple_repeat 1 36 0 337 227 0 0 chr21 2707737 2707803 -32199767 - L1M3d LINE L1 -3734 2481 2416 459 206 113 0 chr21 2707827 2707924 -32199646 - MER96 DNA MER1_type? -41 134 27 405 223 26 136 chr21 2707990 2708108 -32199462 - L1M3d LINE L1 -3794 2421 2348 1186 176 14 9 chr21 2708108 2708324 -32199246 + L1PB4 LINE L1 5928 6144 -12 405 223 26 136 chr21 2708324 2708478 -32199092 - L1M3d LINE L1 -3867 2348 2179 2139 65 76 7 chr21 2708786 2709077 -32198493 - AluY SINE Alu 0 311 1 26 88 0 0 chr21 2709137 2709205 -32198365 + AT_rich Low_complexity Low_complexity 1 68 0 410 266 97 52 chr21 2709224 2709981 -32197589 - L1M3d LINE L1 -4516 1620 1007 225 382 20 0 chr21 2710800 2710902 -32196668 + MER117 DNA MER1_type 45 148 -49 649 210 18 59 chr21 2712034 2712248 -32195322 - MLT1B LTR MaLR 0 390 173 189 94 0 0 chr21 2712264 2712296 -32195274 + (TG)n Simple_repeat Simple_repeat 2 33 0 639 232 37 6 chr21 2712331 2712495 -32195075 - MLT1B LTR MaLR -221 169 1 208 137 98 0 chr21 2713645 2713696 -32193874 + CT-rich Low_complexity Low_complexity 1 56 0 270 302 0 23 chr21 2713723 2713809 -32193761 - L2 LINE L2 -55 3217 3134 531 294 62 28 chr21 2714452 2714663 -32192907 - L1MC4a LINE L1 -1876 5932 5715 38 51 0 0 chr21 2714995 2715054 -32192516 + AT_rich Low_complexity Low_complexity 1 59 0 827 268 87 11 chr21 2715481 2715746 -32191824 - MLT2F LTR ERVL -233 430 146 529 303 80 17 chr21 2715915 2716215 -32191355 - L1ME3 LINE L1 -313 5849 5531 2688 124 70 0 chr21 2716218 2716687 -32190883 - L1MA4 LINE L1 -6 6294 5793 2893 129 13 6 chr21 2716687 2717204 -32190366 + L1M1 LINE L1 5203 5723 -580 391 312 76 22 chr21 2717192 2717468 -32190102 - L1ME3 LINE L1 -621 5545 5255 254 332 62 9 chr21 2717660 2717871 -32189699 - L1ME3 LINE L1 -1127 5019 4798 25 0 0 0 chr21 2717887 2717912 -32189658 + AT_rich Low_complexity Low_complexity 1 25 0 1430 155 43 75 chr21 2720886 2721208 -32186362 - AluJb SINE Alu 0 312 1 39 38 0 0 chr21 2721804 2721857 -32185713 + AT_rich Low_complexity Low_complexity 1 53 0 703 186 0 0 chr21 2721857 2721975 -32185595 - AluJb SINE Alu -194 118 1 23 33 0 0 chr21 2722092 2722122 -32185448 + AT_rich Low_complexity Low_complexity 1 30 0 321 319 74 0 chr21 2722517 2722652 -32184918 - MIR SINE MIR -44 218 74 4755 125 13 34 chr21 2723487 2723602 -32183968 - L1MA3 LINE L1 0 6305 6189 2105 128 103 30 chr21 2723602 2723999 -32183571 + MSTB LTR MaLR 1 426 0 4755 125 13 34 chr21 2723999 2724709 -32182861 - L1MA3 LINE L1 -116 6189 5497 2075 139 10 3 chr21 2724680 2725161 -32182409 - L1MA3 LINE L1 -741 5564 5084 863 131 103 40 chr21 2725161 2725274 -32182296 + MSTA LTR MaLR 243 347 -81 185 0 40 0 chr21 2725274 2725299 -32182271 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7217 10 0 13 chr21 2725299 2726121 -32181449 - L1PA3 LINE L1 -7 6148 5328 863 131 103 40 chr21 2726121 2726181 -32181389 + MSTA LTR MaLR 346 428 0 4878 158 26 2 chr21 2726213 2727144 -32180426 - L1MA3 LINE L1 -1071 5075 4123 5512 141 13 4 chr21 2727326 2727463 -32180107 - L1PA15 LINE L1 0 6165 6031 192 40 0 0 chr21 2727463 2727488 -32180082 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 5512 141 13 4 chr21 2727488 2729017 -32178553 - L1PA15 LINE L1 -134 6031 4486 2870 201 36 8 chr21 2729020 2729627 -32177943 - L1PA15 LINE L1 -1752 4394 3771 24 0 0 0 chr21 2731254 2731278 -32176292 + AT_rich Low_complexity Low_complexity 1 24 0 2029 147 0 0 chr21 2731285 2731571 -32175999 - AluSx SINE Alu -26 286 1 1301 194 24 76 chr21 2732007 2732348 -32175222 + MLT1B LTR MaLR 12 334 -56 295 327 82 80 chr21 2732383 2732909 -32174661 + L1MEd LINE L1 80 606 -5513 24 0 0 0 chr21 2733239 2733263 -32174307 + AT_rich Low_complexity Low_complexity 1 24 0 346 180 0 0 chr21 2733267 2733328 -32174242 + MSTB2 LTR MaLR 397 457 0 651 224 57 29 chr21 2733328 2733538 -32174032 + L1ME3 LINE L1 5939 6154 -8 2648 303 55 45 chr21 2733598 2736076 -32171494 + L1M2a LINE L1 -781 1584 -4729 1031 185 0 0 chr21 2736076 2736254 -32171316 + MER46A DNA MER2_type 1 178 -58 334 118 20 0 chr21 2736324 2736375 -32171195 + MER46A DNA MER2_type 185 236 0 850 188 78 16 chr21 2736375 2736655 -32170915 + L1M2a LINE L1 1185 1781 -4532 1213 253 58 5 chr21 2736682 2737081 -32170489 + L1M2a LINE L1 1819 2238 -4145 19787 169 19 21 chr21 2737057 2742800 -32164770 + L1MA1 LINE L1 22 5749 -1972 1602 183 7 33 chr21 2742800 2742981 -32164589 - AluJb SINE Alu -14 298 127 437 0 19 0 chr21 2742981 2743034 -32164536 + (TTTTA)n Simple_repeat Simple_repeat 2 55 0 1602 183 7 33 chr21 2743034 2743158 -32164412 - AluJb SINE Alu -185 127 1 19787 169 19 21 chr21 2743158 2745124 -32162446 + L1MA1 LINE L1 5749 7717 -4 6795 229 35 25 chr21 2745128 2746318 -32161252 + L1MA9 LINE L1 3052 4228 -3337 1839 188 35 14 chr21 2746318 2746685 -32160885 - THE1C LTR MaLR 0 375 1 6795 229 35 25 chr21 2746685 2746887 -32160683 + L1MA9 LINE L1 4228 4426 -3139 2109 99 10 23 chr21 2746887 2747191 -32160379 + AluSc SINE Alu 1 300 -9 6795 229 35 25 chr21 2747191 2748224 -32159346 + L1MA9 LINE L1 4426 5690 -1875 201 39 0 0 chr21 2748224 2748250 -32159320 + (CA)n Simple_repeat Simple_repeat 2 27 0 6795 229 35 25 chr21 2748250 2748564 -32159006 + L1MA9 LINE L1 5690 5999 -1566 1037 171 11 30 chr21 2748568 2748872 -32158698 + MER2 DNA MER2_type 9 343 -1 3701 182 21 44 chr21 2748872 2750362 -32157208 + L1MA9 LINE L1 5992 7444 -287 1588 171 11 82 chr21 2750372 2750728 -32156842 + MLT1B LTR MaLR 55 385 -5 4577 176 56 37 chr21 2751329 2752341 -32155229 + L1MC3 LINE L1 6754 7785 0 1026 98 0 0 chr21 2752617 2752749 -32154821 - AluY SINE Alu -179 132 1 485 178 44 15 chr21 2752926 2753061 -32154509 - Charlie7 DNA MER1_type 0 2612 2474 317 242 118 50 chr21 2753171 2753332 -32154238 - MLT1H LTR MaLR -5 544 373 570 122 0 0 chr21 2753412 2753510 -32154060 + (TG)n Simple_repeat Simple_repeat 2 99 0 480 269 70 13 chr21 2753608 2753764 -32153806 - MLT1F1 LTR MaLR -399 168 4 327 105 0 0 chr21 2754085 2754142 -32153428 + (T)n Simple_repeat Simple_repeat 1 57 0 541 131 33 6 chr21 2754301 2754547 -32153023 + AluSx SINE Alu 1 301 -8 2344 61 3 10 chr21 2756917 2757211 -32150359 - AluY SINE Alu -17 294 3 319 301 50 20 chr21 2757262 2757461 -32150109 - L1M4 LINE L1 -1175 4971 4767 530 307 40 16 chr21 2757686 2757937 -32149633 - L1M4 LINE L1 -1712 4434 4178 2021 127 0 7 chr21 2758113 2758423 -32149147 - AluSx SINE Alu 0 310 3 23 54 0 0 chr21 2758428 2758465 -32149105 + AT_rich Low_complexity Low_complexity 1 37 0 210 216 69 78 chr21 2760164 2760266 -32147304 - MIR SINE MIR -50 212 112 21 0 0 0 chr21 2760607 2760628 -32146942 + AT_rich Low_complexity Low_complexity 1 21 0 477 169 0 0 chr21 2760891 2760968 -32146602 - AluJ/FLAM SINE Alu -235 77 1 397 325 152 26 chr21 2762634 2763016 -32144554 + L2 LINE L2 2472 2901 -413 314 24 0 24 chr21 2763747 2763788 -32143782 + L1M1 LINE L1 5664 5703 -599 350 299 39 16 chr21 2763816 2763943 -32143627 + L2 LINE L2 3181 3310 -3 332 271 12 35 chr21 2763944 2764029 -32143541 - MIR SINE MIR -158 104 22 23 33 0 0 chr21 2765546 2765576 -32141994 + AT_rich Low_complexity Low_complexity 1 30 0 2112 169 38 6 chr21 2765608 2765974 -32141596 - MLT1B LTR MaLR -8 382 5 281 295 9 45 chr21 2766416 2766528 -32141042 - MIR SINE MIR -65 197 90 2383 99 0 3 chr21 2766808 2767121 -32140449 - AluSp SINE Alu -1 312 1 480 246 20 56 chr21 2767382 2767577 -32139993 - MER112 DNA MER1_type -35 225 38 695 296 39 30 chr21 2768368 2768571 -32138999 + MIR SINE MIR 8 212 -50 1579 301 43 16 chr21 2768593 2769104 -32138466 - MLT1H1 LTR MaLR -30 525 1 21 0 0 0 chr21 2769850 2769871 -32137699 + AT_rich Low_complexity Low_complexity 1 21 0 233 297 62 48 chr21 2770752 2770897 -32136673 + MIR SINE MIR 3 149 -113 364 297 81 48 chr21 2772887 2773255 -32134315 - MLT1I LTR MaLR -1 408 24 443 299 65 36 chr21 2773361 2773842 -32133728 - HAL1 LINE L1 -579 1928 1433 361 272 106 11 chr21 2773884 2774064 -32133506 - HAL1 LINE L1 -1138 1369 1173 1855 311 44 39 chr21 2774083 2775085 -32132485 - HAL1 LINE L1 -1388 1119 113 390 233 42 69 chr21 2775145 2775334 -32132236 - L1MC5 LINE L1 -46 7915 7732 38 0 0 0 chr21 2776524 2776562 -32131008 + AT_rich Low_complexity Low_complexity 1 38 0 1980 243 58 55 chr21 2776754 2777506 -32130064 + L1ME3A LINE L1 5411 6165 -5 189 282 0 0 chr21 2777773 2777812 -32129758 - MIR SINE MIR -133 75 37 5357 114 51 34 chr21 2777983 2778871 -32128699 + MER4D LTR ERV1 1 903 0 279 0 0 0 chr21 2779676 2779707 -32127863 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2947 171 19 76 chr21 2779864 2780597 -32126973 - LTR8 LTR ERV1 0 691 1 234 320 0 25 chr21 2781303 2781425 -32126145 + (TA)n Simple_repeat Simple_repeat 1 119 0 449 262 74 8 chr21 2782480 2782602 -32124968 + MER5B DNA MER1_type 1 130 -48 6124 95 10 9 chr21 2782608 2783509 -32124061 - L1PA12 LINE L1 0 6168 5267 266 245 0 0 chr21 2783595 2783648 -32123922 - MER5B DNA MER1_type 0 178 126 422 175 0 0 chr21 2783725 2783805 -32123765 - L1MB7 LINE L1 -8 6176 6097 453 239 0 9 chr21 2783869 2783978 -32123592 - L1M4 LINE L1 -2027 4617 4510 2929 248 40 55 chr21 2783971 2784956 -32122614 - L1M4 LINE L1 -5557 985 16 357 372 91 26 chr21 2785037 2785456 -32122114 - L2 LINE L2 -1157 2157 1712 388 272 45 78 chr21 2785680 2785869 -32121701 + MIR SINE MIR 7 199 -63 335 364 45 0 chr21 2785892 2786024 -32121546 + MIR3 SINE MIR 60 197 -11 325 333 50 30 chr21 2788224 2788422 -32119148 + MIR3 SINE MIR 4 205 -3 33 0 0 0 chr21 2790183 2790216 -32117354 + AT_rich Low_complexity Low_complexity 1 33 0 739 191 53 33 chr21 2792068 2792220 -32115350 + MER45A DNA AcHobo 1 155 -23 263 120 40 40 chr21 2792817 2792892 -32114678 + (TTAA)n Simple_repeat Simple_repeat 2 76 0 1157 102 11 11 chr21 2793504 2793519 -32114051 + (GAAA)n Simple_repeat Simple_repeat 3 16 -337 2145 84 3 21 chr21 2793519 2793805 -32113765 + AluSp SINE Alu 1 281 -32 1157 102 11 11 chr21 2793805 2794141 -32113429 + (GAAA)n Simple_repeat Simple_repeat 16 353 0 1365 236 62 44 chr21 2794291 2794787 -32112783 - MLT1D LTR MaLR 0 505 1 246 174 0 0 chr21 2796464 2796510 -32111060 + CT-rich Low_complexity Low_complexity 5 50 0 1647 78 0 23 chr21 2796648 2796865 -32110705 + AluSg SINE Alu 1 212 -98 272 100 0 0 chr21 2796865 2796905 -32110665 + AluSg SINE Alu 263 302 -6 391 274 75 70 chr21 2796951 2797152 -32110418 - LTR33 LTR ERVL -16 505 304 871 74 0 0 chr21 2797486 2797594 -32109976 - AluSq/x SINE Alu -205 108 1 2174 123 3 3 chr21 2798956 2799266 -32108304 + AluSx SINE Alu 1 310 -2 202 234 94 26 chr21 2799586 2799712 -32107858 - MIR SINE MIR -14 248 83 446 326 82 73 chr21 2801812 2802152 -32105418 - L2 LINE L2 -12 3260 2918 243 370 114 40 chr21 2802381 2802776 -32104794 - L2 LINE L2 -645 2669 2246 28 0 0 0 chr21 2803372 2803400 -32104170 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr21 2805002 2805027 -32102543 + AT_rich Low_complexity Low_complexity 1 25 0 647 217 25 6 chr21 2805134 2805291 -32102279 + MER105 DNA DNA 44 203 -1 21 0 0 0 chr21 2807881 2807902 -32099668 + AT_rich Low_complexity Low_complexity 1 21 0 784 109 9 0 chr21 2808824 2808934 -32098636 + MER34 LTR ERV1 1 111 -431 780 146 0 58 chr21 2808935 2809072 -32098498 - FLAM_C SINE Alu -12 131 3 2572 153 23 0 chr21 2809072 2809504 -32098066 + MER34 LTR ERV1 101 542 0 428 321 72 34 chr21 2809553 2809874 -32097696 - L1ME4a LINE L1 -190 5931 5599 219 36 0 0 chr21 2810779 2810807 -32096763 + (CAGG)n Simple_repeat Simple_repeat 3 30 0 351 0 0 0 chr21 2811242 2811281 -32096289 + (CA)n Simple_repeat Simple_repeat 2 40 0 5586 62 4 0 chr21 2811675 2812387 -32095183 + L1PA7 LINE L1 5440 6154 0 186 43 0 0 chr21 2813553 2813576 -32093994 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 191 240 115 39 chr21 2813955 2814059 -32093511 + MIR SINE MIR 40 151 -111 250 235 153 12 chr21 2814764 2814849 -32092721 + MIR SINE MIR 49 145 -117 208 229 0 14 chr21 2814957 2814981 -32092589 + (TTA)n Simple_repeat Simple_repeat 2 25 -45 1981 127 11 0 chr21 2814981 2815264 -32092306 + AluSx SINE Alu 2 287 -25 208 229 0 14 chr21 2815264 2815309 -32092261 + (TTA)n Simple_repeat Simple_repeat 25 70 0 205 205 0 0 chr21 2817156 2817195 -32090375 + A-rich Low_complexity Low_complexity 1 39 0 1222 153 165 54 chr21 2818557 2818818 -32088752 + AluJo SINE Alu 1 290 -12 1062 217 87 55 chr21 2820724 2821256 -32086314 + MLT1E1 LTR MaLR 68 626 0 573 264 43 24 chr21 2821364 2821572 -32085998 + L1PB1 LINE L1 6 217 -6646 14512 194 25 8 chr21 2821548 2826515 -32081055 + L1PB1 LINE L1 1392 6501 -366 2162 88 48 0 chr21 2826515 2826843 -32080727 + AluSc SINE Alu 1 342 0 2320 121 32 8 chr21 2826843 2827215 -32080355 + L1PB1 LINE L1 6485 6865 -2 2625 42 7 0 chr21 2827525 2827832 -32079738 + AluY SINE Alu 1 309 -2 629 327 52 57 chr21 2831039 2831169 -32076401 - L2 LINE L2 0 3313 3184 246 81 0 0 chr21 2831169 2831206 -32076364 + (TG)n Simple_repeat Simple_repeat 2 38 0 629 327 52 57 chr21 2831206 2831603 -32075967 - L2 LINE L2 -129 3184 2791 550 210 17 0 chr21 2831605 2831724 -32075846 + LTR16B LTR ERVL 1 121 -343 1341 331 73 46 chr21 2832055 2832336 -32075234 - L2 LINE L2 -593 2721 2449 24 32 0 0 chr21 2832336 2832367 -32075203 + AT_rich Low_complexity Low_complexity 1 31 0 1341 331 73 46 chr21 2832367 2832930 -32074640 - L2 LINE L2 -865 2449 1823 2727 187 46 23 chr21 2833011 2834008 -32073562 + L1MB7 LINE L1 4836 5854 -330 2092 113 7 0 chr21 2834057 2834357 -32073213 - AluSx SINE Alu -9 303 2 21 95 0 0 chr21 2835467 2835530 -32072040 + AT_rich Low_complexity Low_complexity 1 63 0 409 175 0 6 chr21 2835585 2835702 -32071868 + MER5A DNA MER1_type 1 189 0 608 276 164 33 chr21 2835759 2836089 -32071481 + L2 LINE L2 2936 3308 -5 24 0 0 0 chr21 2837336 2837360 -32070210 + AT_rich Low_complexity Low_complexity 1 24 0 218 206 32 16 chr21 2838031 2838094 -32069476 + (TA)n Simple_repeat Simple_repeat 1 64 0 2392 154 13 10 chr21 2838250 2838640 -32068930 + MER61B LTR ERV1 1 391 -34 32 0 0 0 chr21 2839138 2839170 -32068400 + AT_rich Low_complexity Low_complexity 1 32 0 1350 88 16 5 chr21 2839359 2839553 -32068017 + L1PA10 LINE L1 5973 6168 0 2573 190 43 38 chr21 2840190 2840791 -32066779 - MER6A DNA MER2_type 0 605 2 1079 249 64 17 chr21 2842184 2842530 -32065040 + L1MC5 LINE L1 5545 5906 -1902 1143 226 59 82 chr21 2842534 2843292 -32064278 + L1MC5 LINE L1 6923 7663 -298 368 196 61 54 chr21 2843303 2843451 -32064119 + L1MC5 LINE L1 7769 7917 -44 1878 129 0 11 chr21 2843526 2843835 -32063735 - AluSx SINE Alu 0 306 1 207 0 0 0 chr21 2845428 2845451 -32062119 + (A)n Simple_repeat Simple_repeat 1 23 0 31 44 0 0 chr21 2845651 2845696 -32061874 + AT_rich Low_complexity Low_complexity 1 45 0 394 304 19 12 chr21 2846516 2846677 -32060893 - MIR SINE MIR -15 247 86 2466 61 0 3 chr21 2847702 2848012 -32059558 + AluY SINE Alu 1 309 -2 300 292 95 0 chr21 2848284 2848421 -32059149 + MER117 DNA MER1_type 7 156 -41 32 43 0 0 chr21 2848631 2848677 -32058893 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr21 2849349 2849372 -32058198 + AT_rich Low_complexity Low_complexity 1 23 0 1701 148 14 41 chr21 2850569 2850884 -32056686 - AluJo SINE Alu 0 307 1 207 0 0 0 chr21 2852112 2852135 -32055435 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1269 39 13 0 chr21 2852184 2852339 -32055231 - AluY SINE Alu -11 300 144 311 380 25 10 chr21 2852384 2852584 -32054986 - MIR SINE MIR -58 204 2 287 130 0 0 chr21 2852844 2852890 -32054680 + MADE1 DNA Mariner 1 46 -34 1589 176 14 88 chr21 2853180 2853601 -32053969 + MLT1B LTR MaLR 1 390 0 529 271 96 32 chr21 2854563 2854751 -32052819 + L2 LINE L2 2531 2730 -584 406 355 61 4 chr21 2854824 2855055 -32052515 + L2 LINE L2 2862 3105 -208 526 271 14 29 chr21 2855289 2855429 -32052141 + MER5B DNA MER1_type 38 175 -3 10577 39 24 0 chr21 2856898 2858949 -32048621 + L1PA5 LINE L1 4078 6151 -3 1152 134 4 100 chr21 2859072 2859311 -32048259 - MER30 DNA MER1_type -13 217 2 299 273 0 0 chr21 2859329 2859395 -32048175 - L2 LINE L2 -1 3312 3247 918 211 29 10 chr21 2859463 2859667 -32047903 + AluJb SINE Alu 87 294 -18 213 87 87 22 chr21 2859667 2859713 -32047857 + GA-rich Low_complexity Low_complexity 1 49 0 1321 159 61 43 chr21 2860320 2860543 -32047027 + AluJo SINE Alu 1 231 -81 207 0 0 0 chr21 2860543 2860566 -32047004 + (TTAGGG)n Simple_repeat Simple_repeat 4 26 0 1321 159 61 43 chr21 2860566 2860619 -32046951 + AluJo SINE Alu 231 282 -30 1812 169 0 3 chr21 2861721 2862016 -32045554 - AluJb SINE Alu -16 296 3 23 33 0 0 chr21 2862313 2862343 -32045227 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 2864329 2864351 -32043219 + AT_rich Low_complexity Low_complexity 1 22 0 2122 104 0 4 chr21 2864381 2864659 -32042911 - AluSg SINE Alu -16 294 18 25 0 0 0 chr21 2865405 2865430 -32042140 + AT_rich Low_complexity Low_complexity 1 25 0 239 277 15 0 chr21 2869488 2869553 -32038017 - MIR SINE MIR -151 111 46 1938 172 8 27 chr21 2869996 2870363 -32037207 + MLT1A1 LTR MaLR 6 365 0 301 246 62 87 chr21 2870647 2870842 -32036728 - HAL1 LINE L1 -89 2418 2229 661 205 43 78 chr21 2871309 2871567 -32036003 - HAL1 LINE L1 -884 1623 1375 219 360 45 9 chr21 2871968 2872079 -32035491 + MIR SINE MIR 132 246 -16 1729 195 10 0 chr21 2872355 2872658 -32034912 - AluJo SINE Alu -1 311 6 255 286 36 0 chr21 2874106 2874190 -32033380 + (TATATG)n Simple_repeat Simple_repeat 2 88 0 258 337 35 6 chr21 2875406 2875578 -32031992 + L2 LINE L2 2829 3005 -267 301 182 61 0 chr21 2875792 2875858 -32031712 + L2 LINE L2 3203 3272 0 1855 144 0 16 chr21 2876063 2876368 -32031202 + AluSx SINE Alu 1 300 -12 1293 207 17 24 chr21 2877178 2877473 -32030097 - AluJo SINE Alu -19 293 1 830 178 100 6 chr21 2877975 2878155 -32029415 + LTR8 LTR ERV1 1 197 -494 541 200 27 9 chr21 2878505 2878615 -32028955 - MLT1C LTR MaLR 0 467 356 1666 196 99 73 chr21 2878599 2879135 -32028435 + LTR8A LTR ERV1 178 727 0 1794 190 29 74 chr21 2879259 2879748 -32027822 + MLT1C LTR MaLR 1 467 0 196 75 25 25 chr21 2880196 2880236 -32027334 + (TA)n Simple_repeat Simple_repeat 1 40 0 2182 93 31 3 chr21 2882680 2882971 -32024599 + AluSx SINE Alu 1 299 -13 2129 134 0 0 chr21 2884213 2884505 -32023065 - AluSx SINE Alu -20 292 1 29 78 0 0 chr21 2885010 2885074 -32022496 + AT_rich Low_complexity Low_complexity 1 64 0 300 259 114 15 chr21 2885407 2885538 -32022032 + MIR SINE MIR 35 178 -84 240 289 124 10 chr21 2885662 2885759 -32021811 - MER5B DNA MER1_type -1 177 70 287 277 60 12 chr21 2886249 2886332 -32021238 - MIR3 SINE MIR -28 180 94 1586 190 10 20 chr21 2886677 2886977 -32020593 + AluJo SINE Alu 1 297 -15 195 314 0 43 chr21 2888331 2888401 -32019169 + L2 LINE L2 2542 2608 -706 29 28 0 0 chr21 2889811 2889847 -32017723 + AT_rich Low_complexity Low_complexity 1 36 0 297 361 37 9 chr21 2889970 2890078 -32017492 - MIR SINE MIR -65 143 33 428 304 21 19 chr21 2890145 2890329 -32017241 + MIR SINE MIR 6 143 -65 189 0 0 0 chr21 2891199 2891220 -32016350 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 216 97 0 0 chr21 2892811 2892842 -32014728 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 2167 127 3 0 chr21 2894712 2894892 -32012678 - AluSg SINE Alu -1 309 126 486 49 0 0 chr21 2894892 2894953 -32012617 + (TA)n Simple_repeat Simple_repeat 2 62 0 2167 127 3 0 chr21 2894953 2895080 -32012490 - AluSg SINE Alu -184 126 1 1853 97 8 0 chr21 2896125 2896373 -32011197 + AluSg SINE Alu 56 305 -5 870 143 0 0 chr21 2897316 2897449 -32010121 - FLAM_C SINE Alu 0 133 1 263 357 0 0 chr21 2897569 2897653 -32009917 + L2 LINE L2 3199 3282 -31 334 336 56 8 chr21 2898679 2898804 -32008766 - MIR SINE MIR -112 150 20 511 263 32 45 chr21 2898852 2899008 -32008562 + MIR SINE MIR 1 154 -108 2507 58 0 6 chr21 2899014 2899327 -32008243 - AluY SINE Alu 0 311 1 23 0 0 0 chr21 2900499 2900522 -32007048 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 2903354 2903375 -32004195 + AT_rich Low_complexity Low_complexity 1 21 0 2384 103 0 0 chr21 2903652 2903962 -32003608 + AluSg SINE Alu 1 310 0 554 325 68 34 chr21 2904127 2904478 -32003092 - L2 LINE L2 0 3313 2951 767 307 59 24 chr21 2905013 2905384 -32002186 + L2 LINE L2 1919 2302 -1012 246 32 0 0 chr21 2905414 2905445 -32002125 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 7000 12 27 0 chr21 2905446 2906254 -32001316 - L1PA2 LINE L1 -5 6150 5321 452 300 67 17 chr21 2906853 2907033 -32000537 - MIR3 SINE MIR -1 207 19 248 148 98 0 chr21 2907206 2907267 -32000303 + L1MC4 LINE L1 6644 6710 -1332 1475 181 3 61 chr21 2907940 2908250 -31999320 - AluJo SINE Alu -12 300 9 27 0 0 0 chr21 2908811 2908838 -31998732 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 2909955 2909976 -31997594 + AT_rich Low_complexity Low_complexity 1 21 0 339 263 44 9 chr21 2911924 2912038 -31995532 + (TATATG)n Simple_repeat Simple_repeat 2 119 0 841 181 28 40 chr21 2912428 2912495 -31995075 + MLT1A1 LTR MaLR 1 67 -298 2306 181 24 2 chr21 2912495 2912914 -31994656 - MSTA LTR MaLR 0 428 1 841 181 28 40 chr21 2912914 2913023 -31994547 + MLT1A1 LTR MaLR 67 175 -190 788 155 16 0 chr21 2913031 2913160 -31994410 + MLT1A1 LTR MaLR 235 365 0 320 273 71 10 chr21 2913268 2913367 -31994203 - MIR SINE MIR -71 191 87 2198 231 30 27 chr21 2914089 2914652 -31992918 + MLT1F1 LTR MaLR 3 567 0 523 281 56 82 chr21 2915299 2915691 -31991879 - MLT1J LTR MaLR -19 492 111 1907 151 77 33 chr21 2916770 2916839 -31990731 + MSTB1 LTR MaLR 2 67 -365 1966 146 26 32 chr21 2916839 2917216 -31990354 + THE1C LTR MaLR 1 375 0 1907 151 77 33 chr21 2917216 2917536 -31990034 + MSTB1 LTR MaLR 67 408 -24 239 111 0 0 chr21 2917564 2917600 -31989970 + MSTB1 LTR MaLR 422 457 0 243 241 19 0 chr21 2918540 2918594 -31988976 + GA-rich Low_complexity Low_complexity 1 55 0 417 252 9 17 chr21 2918712 2918827 -31988743 - MIR SINE MIR -121 141 28 256 325 95 16 chr21 2919986 2920112 -31987458 + MIR3 SINE MIR 69 204 -4 318 321 0 0 chr21 2920353 2920434 -31987136 - MIR3 SINE MIR -13 195 115 777 272 34 5 chr21 2921902 2922108 -31985462 + MLT1G1 LTR MaLR 5 216 -379 597 196 30 0 chr21 2922111 2922244 -31985326 + FLAM_A SINE Alu 1 137 -5 971 266 103 36 chr21 2922254 2922678 -31984892 + MLT1G LTR MaLR 157 590 0 2347 50 4 0 chr21 2923483 2923813 -31983757 - AluY SINE Alu 0 333 3 22 56 0 0 chr21 2924024 2924060 -31983510 + AT_rich Low_complexity Low_complexity 1 36 0 26 82 0 0 chr21 2924199 2924260 -31983310 + AT_rich Low_complexity Low_complexity 1 61 0 3894 199 82 4 chr21 2925712 2926476 -31981094 + L1M1 LINE L1 12 835 -6730 21 36 0 0 chr21 2926827 2926855 -31980715 + AT_rich Low_complexity Low_complexity 1 28 0 237 132 0 0 chr21 2926951 2926989 -31980581 + (TA)n Simple_repeat Simple_repeat 2 39 0 4968 155 63 42 chr21 2927383 2928432 -31979138 + MER11C LTR ERVK 1 1071 0 1026 198 6 0 chr21 2928613 2928795 -31978775 - AluJo SINE Alu -24 288 106 2117 102 3 7 chr21 2929628 2929913 -31977657 + AluSc SINE Alu 1 284 -25 384 253 32 32 chr21 2930855 2931009 -31976561 + L1MC5 LINE L1 7075 7228 -733 207 250 0 39 chr21 2931313 2931365 -31976205 + MIR SINE MIR 200 249 -13 23 0 0 0 chr21 2931471 2931494 -31976076 + AT_rich Low_complexity Low_complexity 1 23 0 522 226 13 13 chr21 2931527 2931682 -31975888 + L1MC5 LINE L1 7315 7469 -492 492 244 82 53 chr21 2931721 2932077 -31975493 + L1MC5 LINE L1 7548 7913 -48 225 0 0 0 chr21 2933539 2933564 -31974006 + (A)n Simple_repeat Simple_repeat 1 25 0 301 75 38 0 chr21 2933695 2933748 -31973822 + A-rich Low_complexity Low_complexity 1 55 0 462 143 0 0 chr21 2936326 2936403 -31971167 + (TG)n Simple_repeat Simple_repeat 2 78 0 304 143 0 54 chr21 2937238 2937294 -31970276 - L2 LINE L2 0 3313 3261 1410 224 100 58 chr21 2937294 2937795 -31969775 - MER39 LTR ERV1 0 707 186 1743 150 72 31 chr21 2937867 2938227 -31969343 + THE1C LTR MaLR 1 375 0 41146 66 4 1 chr21 2938850 2944983 -31962587 + L1PA5 LINE L1 3 6152 -2 1345 139 63 0 chr21 2945862 2946114 -31961456 + L1MA5A LINE L1 6024 6291 -6 29 28 0 0 chr21 2946118 2946154 -31961416 + AT_rich Low_complexity Low_complexity 1 36 0 682 225 5 80 chr21 2946521 2946708 -31960862 - MIR SINE MIR -33 229 57 186 71 0 0 chr21 2949096 2949124 -31958446 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1557 111 5 0 chr21 2949150 2949357 -31958213 - AluSg SINE Alu -98 212 5 259 148 16 16 chr21 2949613 2949674 -31957896 + GA-rich Low_complexity Low_complexity 4 64 0 1430 267 111 30 chr21 2950293 2950791 -31956779 - MLT1E LTR MaLR -19 574 36 549 73 0 49 chr21 2950791 2950873 -31956697 + MLT2D LTR ERVL 1 78 -336 180 0 0 0 chr21 2950873 2950893 -31956677 + (TC)n Simple_repeat Simple_repeat 2 21 0 216 67 0 0 chr21 2950893 2950923 -31956647 + (CA)n Simple_repeat Simple_repeat 2 31 0 330 89 0 0 chr21 2950927 2950972 -31956598 + MLT2D LTR ERVL 370 414 0 255 246 18 0 chr21 2951514 2951571 -31955999 - tRNA-Ile-ATT tRNA tRNA -7 70 13 33 43 0 0 chr21 2951712 2951759 -31955811 + AT_rich Low_complexity Low_complexity 1 47 0 6249 95 5 25 chr21 2951764 2953061 -31954509 + L1PA8 LINE L1 4897 6172 0 198 0 0 0 chr21 2953520 2953542 -31954028 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1717 57 70 4 chr21 2953542 2953771 -31953799 - L1PA6 LINE L1 -18 6136 5893 1983 102 3 71 chr21 2954258 2954581 -31952989 + AluY SINE Alu 1 301 -10 397 221 0 35 chr21 2954772 2954858 -31952712 + Charlie5 DNA MER1_type 1 83 -2529 190 0 0 62 chr21 2954858 2954890 -31952680 + (TTTAA)n Simple_repeat Simple_repeat 1 30 0 967 182 60 30 chr21 2954934 2955203 -31952367 + Charlie5 DNA MER1_type 2348 2624 0 555 211 50 11 chr21 2955939 2956119 -31951451 - MER33 DNA MER1_type -111 213 27 563 231 41 18 chr21 2956138 2956307 -31951263 - MER58C DNA MER1_type 0 215 43 342 320 9 12 chr21 2956454 2956596 -31950974 - MIR SINE MIR -62 146 13 181 159 0 91 chr21 2956657 2956701 -31950869 - L2 LINE L2 0 3313 3274 2104 196 10 13 chr21 2956914 2957311 -31950259 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr21 2958356 2958378 -31949192 + AT_rich Low_complexity Low_complexity 1 22 0 184 288 137 14 chr21 2959159 2959232 -31948338 + MIR SINE MIR 31 112 -150 2394 157 48 0 chr21 2959497 2959910 -31947660 - Tigger2a DNA MER2_type -1 433 1 411 116 29 14 chr21 2960222 2960291 -31947279 - MER63 DNA MER1_type -314 747 678 21040 159 24 5 chr21 2961297 2964888 -31942682 + L1MA1 LINE L1 16 3675 -3890 8558 26 0 0 chr21 2964894 2965894 -31941676 - L1PA3 LINE L1 -1204 4942 3943 7615 25 0 3 chr21 2965894 2967134 -31940436 + L1PA3 LINE L1 4919 6155 0 13798 176 23 18 chr21 2967168 2967185 -31940385 + L1MA1 LINE L1 3672 3687 -4034 1888 171 0 0 chr21 2967185 2967470 -31940100 + AluSx SINE Alu 1 288 -24 405 0 0 0 chr21 2967470 2967515 -31940055 + (CA)n Simple_repeat Simple_repeat 2 46 0 1888 171 0 0 chr21 2967515 2967528 -31940042 + AluSx SINE Alu 287 299 -13 13798 176 23 18 chr21 2967528 2970891 -31936679 + L1MA1 LINE L1 3687 7068 -653 4169 98 5 2 chr21 2970898 2971497 -31936073 + L1MA1 LINE L1 7117 7717 -4 29 70 0 0 chr21 2971643 2971700 -31935870 + AT_rich Low_complexity Low_complexity 1 57 0 288 130 0 0 chr21 2972548 2972594 -31934976 + (GAAA)n Simple_repeat Simple_repeat 1 46 0 22 35 0 0 chr21 2972879 2972908 -31934662 + AT_rich Low_complexity Low_complexity 1 29 0 635 280 87 59 chr21 2973660 2974099 -31933471 + L1M4 LINE L1 4383 4833 -1313 4229 182 23 33 chr21 2976959 2977832 -31929738 - L1MB3 LINE L1 -2 6181 5318 328 87 0 0 chr21 2977842 2977888 -31929682 + Alu SINE Alu 248 293 -7 2149 210 40 21 chr21 2977901 2978473 -31929097 - L1MB3 LINE L1 -836 5310 4728 417 261 36 9 chr21 2978552 2978663 -31928907 - MIR SINE MIR -129 133 20 234 246 16 0 chr21 2978682 2978743 -31928827 + MIR SINE MIR 82 143 -119 32 0 0 0 chr21 2978872 2978904 -31928666 + AT_rich Low_complexity Low_complexity 1 32 0 2617 141 52 12 chr21 2978906 2979402 -31928168 - L1MA8 LINE L1 -4 6287 5772 1039 128 0 0 chr21 2979402 2979551 -31928019 + L1MA8 LINE L1 5624 5772 -519 267 236 0 0 chr21 2979904 2979959 -31927611 - MLT1L LTR MaLR -221 394 340 352 257 63 48 chr21 2980251 2980457 -31927113 - L1MC5 LINE L1 -41 7920 7712 225 333 37 28 chr21 2980535 2980643 -31926927 + MLT1G1 LTR MaLR 73 181 -414 1287 142 8 4 chr21 2980676 2980916 -31926654 - L1MA7 LINE L1 -1 6290 6050 720 229 151 48 chr21 2980921 2981266 -31926304 + MLT1G1 LTR MaLR 178 574 -21 214 208 0 21 chr21 2981325 2981373 -31926197 + GA-rich Low_complexity Low_complexity 2 48 0 2269 94 0 16 chr21 2981804 2982111 -31925459 - AluSg SINE Alu -8 302 1 274 207 11 58 chr21 2982146 2982233 -31925337 - L1MC5 LINE L1 -818 7143 7061 1814 153 52 30 chr21 2982269 2982636 -31924934 - THE1C LTR MaLR 0 375 1 232 294 0 0 chr21 2982676 2982727 -31924843 + polypyrimidine Low_complexity Low_complexity 2 52 0 460 283 62 26 chr21 2982745 2982971 -31924599 - L1MC4 LINE L1 -977 7065 6832 320 298 92 23 chr21 2983655 2983786 -31923784 + MIR SINE MIR 10 149 -113 207 114 0 0 chr21 2984782 2984817 -31922753 + (GA)n Simple_repeat Simple_repeat 2 36 0 450 0 0 0 chr21 2985020 2985070 -31922500 + (TA)n Simple_repeat Simple_repeat 2 51 0 5233 103 4 21 chr21 2985081 2985884 -31921686 - L1P LINE L1 -956 5190 4402 5068 119 12 1 chr21 2985882 2986652 -31920918 + L1P LINE L1 3626 4403 -1743 4168 80 5 7 chr21 2986662 2987235 -31920335 - L1PA7 LINE L1 -2 6152 5581 218 224 60 30 chr21 2987359 2987426 -31920144 + MIR3 SINE MIR 111 179 -29 2336 112 19 25 chr21 2987804 2988170 -31919400 + THE1B LTR MaLR 1 364 0 968 270 75 35 chr21 2988728 2989157 -31918413 - L1ME3 LINE L1 -31 6131 5686 222 150 0 0 chr21 2989195 2989235 -31918335 + (TA)n Simple_repeat Simple_repeat 1 40 0 349 287 0 0 chr21 2989241 2989328 -31918242 - L1MC4 LINE L1 -1342 6700 6614 309 143 0 0 chr21 2989314 2989363 -31918207 - L1MC4 LINE L1 -1339 6703 6655 508 306 135 5 chr21 2989398 2989591 -31917979 - L1ME3 LINE L1 -525 5641 5424 648 317 47 16 chr21 2989594 2990083 -31917487 - L1ME3 LINE L1 -745 5401 4898 278 362 68 18 chr21 2990301 2990464 -31917106 + MIR3 SINE MIR 23 193 -15 268 320 13 0 chr21 2992088 2992163 -31915407 - MIR SINE MIR -91 117 42 270 299 93 0 chr21 2992993 2993100 -31914470 + MIR3 SINE MIR 68 184 -24 391 350 96 39 chr21 2994992 2995452 -31912118 + L2 LINE L2 1634 2119 -1195 352 294 59 0 chr21 2995685 2995804 -31911766 - LTR16C LTR ERVL -3 488 363 368 325 19 13 chr21 2996647 2996801 -31910769 - Tigger8 DNA MER2_type -23 643 489 2210 128 28 11 chr21 2997337 2997695 -31909875 - THE1B LTR MaLR 0 364 1 510 200 144 31 chr21 2997855 2998015 -31909555 + MER5B DNA MER1_type 1 178 0 671 218 30 79 chr21 2998017 2998182 -31909388 + MER5A DNA MER1_type 29 185 -4 2670 80 19 3 chr21 2998983 2999358 -31908212 + L1PA8 LINE L1 5791 6171 -1 26 30 0 0 chr21 2999492 2999525 -31908045 + AT_rich Low_complexity Low_complexity 1 33 0 214 161 0 48 chr21 3000867 3000929 -31906641 + GA-rich Low_complexity Low_complexity 3 61 0 1671 192 72 3 chr21 3000929 3001263 -31906307 + MLT1A1 LTR MaLR 1 357 -8 625 182 11 17 chr21 3001298 3001474 -31906096 + GA-rich Low_complexity Low_complexity 4 178 0 2102 131 0 13 chr21 3001487 3001792 -31905778 - AluSx SINE Alu -11 301 1 1882 106 64 0 chr21 3002426 3002690 -31904880 - AluSq SINE Alu -25 288 8 220 359 51 39 chr21 3002713 3002969 -31904601 + L2 LINE L2 2808 3066 -206 212 305 34 0 chr21 3003120 3003179 -31904391 + L2 LINE L2 3202 3262 -10 2130 101 0 4 chr21 3003710 3003988 -31903582 - AluSc SINE Alu -16 293 17 242 216 0 20 chr21 3004616 3004667 -31902903 + MIR SINE MIR 6 55 -207 301 254 120 49 chr21 3005671 3005813 -31901757 - MER5A DNA MER1_type 0 189 38 2581 103 14 0 chr21 3007053 3007411 -31900159 - THE1B LTR MaLR 0 364 2 189 0 0 0 chr21 3009428 3009449 -31898121 + (CA)n Simple_repeat Simple_repeat 2 22 0 24 0 0 0 chr21 3010482 3010506 -31897064 + AT_rich Low_complexity Low_complexity 1 24 0 1645 168 27 20 chr21 3010506 3010804 -31896766 - AluJb SINE Alu -11 301 2 1786 48 0 5 chr21 3010807 3011017 -31896553 - AluY SINE Alu -17 294 86 315 0 0 0 chr21 3011656 3011691 -31895879 + (CA)n Simple_repeat Simple_repeat 2 36 0 1741 112 4 0 chr21 3012214 3012446 -31895124 + AluSq SINE Alu 16 248 -65 404 254 35 26 chr21 3013289 3013403 -31894167 - MIR SINE MIR -95 167 53 554 168 0 0 chr21 3014449 3014542 -31893028 + MLT1A1 LTR MaLR 1 93 -272 392 92 0 0 chr21 3014542 3014604 -31892966 - MLT2A1 LTR ERVL 0 444 336 337 121 64 23 chr21 3014618 3014791 -31892779 + (TA)n Simple_repeat Simple_repeat 1 180 0 198 0 0 0 chr21 3014858 3014880 -31892690 + (TA)n Simple_repeat Simple_repeat 2 23 0 3118 84 0 0 chr21 3014880 3015284 -31892286 - MLT2A1 LTR ERVL -40 404 1 984 234 61 19 chr21 3015284 3015545 -31892025 + MLT1A1 LTR MaLR 89 360 -5 777 277 55 3 chr21 3016132 3016545 -31891025 - MER110 LTR ERV1 0 491 46 365 312 35 21 chr21 3018574 3018718 -31888852 - MER5A DNA MER1_type -1 188 43 243 0 0 0 chr21 3019566 3019593 -31887977 + (TG)n Simple_repeat Simple_repeat 2 28 0 192 111 0 0 chr21 3020222 3020258 -31887312 + (T)n Simple_repeat Simple_repeat 1 36 0 317 260 26 13 chr21 3021093 3021170 -31886400 + MER5A DNA MER1_type 32 109 -80 2269 93 0 6 chr21 3021501 3021812 -31885758 - AluY SINE Alu -2 309 1 1690 216 30 60 chr21 3022287 3022786 -31884784 - MER31A LTR ERV1 -1 484 1 238 355 75 0 chr21 3023562 3023655 -31883915 - L2 LINE L2 -4 3309 3210 1858 135 72 26 chr21 3025336 3025684 -31881886 - THE1B LTR MaLR 0 364 1 301 379 25 17 chr21 3027980 3028215 -31879355 - L3 LINE CR1 -251 1326 1090 2194 74 51 3 chr21 3028285 3028581 -31878989 - AluY SINE Alu -1 310 1 1837 275 50 48 chr21 3030187 3031199 -31876371 + L1MEc LINE L1 1458 2471 -3925 2552 278 38 10 chr21 3031459 3032259 -31875311 - L1ME3A LINE L1 -11 6159 5338 478 282 55 4 chr21 3032290 3032545 -31875025 - L1ME3A LINE L1 -909 5237 4970 953 308 17 38 chr21 3033120 3033412 -31874158 + L1MDb LINE L1 3 288 -6121 325 276 71 126 chr21 3033424 3033678 -31873892 + L1MDb LINE L1 348 587 -5822 4442 218 91 37 chr21 3033679 3035099 -31872471 + L1MDb LINE L1 746 2087 -4319 1784 182 0 19 chr21 3035099 3035417 -31872153 + AluJb SINE Alu 1 312 0 4442 218 91 37 chr21 3035417 3035439 -31872131 + L1MDb LINE L1 2087 2106 -4300 1354 204 25 83 chr21 3035439 3035836 -31871734 - MLT1A2 LTR MaLR 0 374 1 4442 218 91 37 chr21 3035836 3035947 -31871623 + L1MDb LINE L1 2106 2210 -4196 225 0 0 0 chr21 3035947 3035972 -31871598 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 4442 218 91 37 chr21 3035972 3036157 -31871413 + L1MDb LINE L1 2210 2564 -3842 195 100 0 0 chr21 3037521 3037551 -31870019 + (CAATT)n Simple_repeat Simple_repeat 4 33 0 220 155 17 17 chr21 3037695 3037753 -31869817 + CT-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr21 3039749 3039770 -31867800 + AT_rich Low_complexity Low_complexity 1 21 0 4521 56 2 2 chr21 3039770 3040338 -31867232 - L1PA8 LINE L1 -9 6163 5596 1555 137 44 0 chr21 3041151 3041377 -31866193 + AluSx SINE Alu 1 236 -76 212 125 42 0 chr21 3041661 3041709 -31865861 + A-rich Low_complexity Low_complexity 4 53 0 2101 118 0 10 chr21 3041818 3042122 -31865448 + AluSc SINE Alu 1 301 -8 452 99 0 0 chr21 3042624 3042695 -31864875 - L1MA3 LINE L1 0 6305 6235 472 186 58 0 chr21 3043011 3043167 -31864403 + (TA)n Simple_repeat Simple_repeat 2 166 0 954 135 0 0 chr21 3043232 3043365 -31864205 + AluJo SINE Alu 2 134 -178 624 197 31 97 chr21 3043410 3043638 -31863932 + L1MC5 LINE L1 6755 6967 -994 690 224 110 26 chr21 3043932 3044178 -31863392 + L1MC5 LINE L1 7603 7876 -85 467 110 41 0 chr21 3044178 3044251 -31863319 - MADE1 DNA Mariner 0 80 5 690 224 110 26 chr21 3044251 3044276 -31863294 + L1MC5 LINE L1 7876 7897 -64 430 250 0 7 chr21 3044295 3044431 -31863139 - LTR37A LTR ERV1 0 426 292 585 236 21 58 chr21 3044538 3044729 -31862841 - LTR37A LTR ERV1 -217 209 26 2291 192 47 16 chr21 3044786 3045276 -31862294 + MLT1D LTR MaLR 1 505 0 1230 284 58 52 chr21 3045648 3046323 -31861247 - MER31-int LTR ERV1 -875 4061 3383 1404 205 31 0 chr21 3046430 3046689 -31860881 + AluJo SINE Alu 1 267 -45 566 219 65 47 chr21 3046706 3046875 -31860695 - MER58A DNA MER1_type -52 172 1 219 293 122 24 chr21 3047367 3047449 -31860121 - MER5B DNA MER1_type -87 91 2 1652 228 52 38 chr21 3047487 3047934 -31859636 - LTR40c LTR ERVL -12 453 1 591 235 39 88 chr21 3048123 3048408 -31859162 - MER31-int LTR ERV1 -1870 3066 2796 2151 139 0 0 chr21 3048613 3048922 -31858648 + AluSx SINE Alu 1 309 -3 2466 72 0 7 chr21 3049222 3049529 -31858041 - AluY SINE Alu -6 305 1 558 216 35 35 chr21 3049639 3049810 -31857760 + Charlie1 DNA MER1_type 2551 2721 -40 1798 168 6 25 chr21 3050062 3050378 -31857192 - AluJo SINE Alu 0 312 3 287 218 61 61 chr21 3050650 3050797 -31856773 - MER31-int LTR ERV1 -3488 1448 1302 2491 76 0 0 chr21 3050979 3051281 -31856289 - AluY SINE Alu -9 302 1 228 227 0 40 chr21 3051879 3051954 -31855616 - LTR37B LTR ERV1 0 468 397 844 189 52 0 chr21 3052161 3052314 -31855256 - MER3 DNA MER1_type -2 207 47 1850 177 85 22 chr21 3052650 3053052 -31854518 + MLT1C LTR MaLR 1 427 -40 899 224 35 51 chr21 3053050 3053362 -31854208 - LTR37A LTR ERV1 -42 384 78 258 169 112 67 chr21 3053801 3053890 -31853680 - MLT1J1 LTR MaLR -8 438 346 349 326 0 0 chr21 3055539 3055674 -31851896 + L1ME3 LINE L1 5732 5866 -296 3521 66 2 0 chr21 3056149 3056601 -31850969 - L1PA7 LINE L1 -12 6142 5690 249 291 63 0 chr21 3056811 3056890 -31850680 + L2 LINE L2 3180 3263 -50 225 225 84 14 chr21 3057662 3057733 -31849837 + MIR SINE MIR 178 253 -9 32 43 0 0 chr21 3057755 3057801 -31849769 + AT_rich Low_complexity Low_complexity 1 46 0 260 313 40 10 chr21 3058219 3058318 -31849252 + MIR SINE MIR 17 118 -90 22 0 0 0 chr21 3058487 3058509 -31849061 + AT_rich Low_complexity Low_complexity 1 22 0 264 219 245 84 chr21 3059065 3059208 -31848362 + MER5A DNA MER1_type 14 178 0 763 228 18 22 chr21 3061370 3061659 -31845911 + L1M4c LINE L1 2041 2322 -4060 375 224 61 30 chr21 3061635 3061800 -31845770 + L1M1 LINE L1 3455 3624 -3941 2115 106 3 3 chr21 3061829 3062145 -31845425 + AluSc SINE Alu 1 316 0 1635 146 175 26 chr21 3062149 3062492 -31845078 - MSTA LTR MaLR -34 394 1 8897 153 30 30 chr21 3062492 3064071 -31843499 - MSTA-int LTR MaLR 0 1580 3 2063 136 121 23 chr21 3064073 3064463 -31843107 - MSTA LTR MaLR 0 428 1 733 271 55 30 chr21 3064711 3064788 -31842782 + MIR SINE MIR 8 82 -180 1682 191 50 19 chr21 3064788 3065166 -31842404 - MLT1B LTR MaLR 0 390 1 733 271 55 30 chr21 3065166 3065324 -31842246 + MIR SINE MIR 82 249 -13 2134 134 3 0 chr21 3065795 3066100 -31841470 + AluSq SINE Alu 1 306 -7 1082 218 32 7 chr21 3066855 3067140 -31840430 + L1MA4 LINE L1 6004 6295 -5 223 240 0 0 chr21 3068122 3068172 -31839398 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 511 364 36 9 chr21 3068826 3069046 -31838524 + L2 LINE L2 2651 2876 -438 298 326 54 38 chr21 3069075 3069314 -31838256 + L2 LINE L2 2940 3182 -131 428 209 18 0 chr21 3069408 3069518 -31838052 + GA-rich Low_complexity Low_complexity 2 113 0 637 321 48 16 chr21 3070841 3071156 -31836414 + L1MB1 LINE L1 189 513 -5800 2809 246 40 21 chr21 3071838 3072915 -31834655 + L1MB1 LINE L1 975 2029 -4353 1934 208 3 3 chr21 3072915 3073280 -31834290 + MLT1A1 LTR MaLR 1 365 0 2809 246 40 21 chr21 3073280 3073303 -31834267 + L1MB1 LINE L1 2029 2050 -4332 22 94 0 0 chr21 3073303 3073367 -31834203 + AT_rich Low_complexity Low_complexity 1 64 0 2809 246 40 21 chr21 3073367 3074530 -31833040 + L1MB1 LINE L1 2050 3215 -3167 2745 200 46 9 chr21 3074525 3074971 -31832599 + L1MB1 LINE L1 4020 4501 -1881 225 65 0 0 chr21 3074971 3075002 -31832568 + (CA)n Simple_repeat Simple_repeat 2 32 0 2745 200 46 9 chr21 3075002 3075225 -31832345 + L1MB1 LINE L1 4501 4714 -1668 204 40 0 0 chr21 3075225 3075250 -31832320 + (CA)n Simple_repeat Simple_repeat 2 26 0 213 121 0 0 chr21 3076657 3076690 -31830880 + (TGG)n Simple_repeat Simple_repeat 1 33 0 3807 181 27 33 chr21 3076915 3078157 -31829413 + L1MB1 LINE L1 4701 5980 -424 2166 75 3 39 chr21 3078157 3078464 -31829106 + AluY SINE Alu 1 296 -15 3807 181 27 33 chr21 3078464 3078887 -31828683 + L1MB1 LINE L1 5980 6404 0 234 299 134 15 chr21 3080448 3080649 -31826921 + L2 LINE L2 1306 1530 -1784 363 250 62 0 chr21 3080708 3080804 -31826766 - L2 LINE L2 -20 3252 3151 279 365 65 0 chr21 3081175 3081375 -31826195 + L2 LINE L2 2082 2294 -1020 578 311 82 17 chr21 3081542 3081835 -31825735 - MLT1J1 LTR MaLR -73 373 62 2310 166 57 5 chr21 3082187 3082590 -31824980 + MSTB LTR MaLR 2 425 -1 25 65 0 0 chr21 3082608 3082654 -31824916 + AT_rich Low_complexity Low_complexity 1 46 0 315 0 0 0 chr21 3083274 3083309 -31824261 + (CA)n Simple_repeat Simple_repeat 2 36 0 570 277 76 72 chr21 3084478 3084897 -31822673 - L2 LINE L2 -63 3250 2830 363 157 0 0 chr21 3086142 3086212 -31821358 + (CA)n Simple_repeat Simple_repeat 2 71 0 2064 136 7 0 chr21 3086367 3086668 -31820902 + AluSq SINE Alu 2 304 -9 238 31 0 0 chr21 3087550 3087582 -31819988 + MADE1 DNA Mariner 49 80 0 334 287 23 11 chr21 3087988 3088075 -31819495 + MER5A DNA MER1_type 2 89 -100 533 233 14 10 chr21 3088131 3088252 -31819318 + MER5A DNA MER1_type 54 189 0 748 192 84 59 chr21 3088608 3088811 -31818759 + MLT1E2 LTR MaLR 1 208 -418 1109 185 16 49 chr21 3088911 3089154 -31818416 + MLT1E2 LTR MaLR 391 625 -1 2127 161 23 8 chr21 3089775 3090159 -31817411 - MLT1B LTR MaLR 0 390 1 613 301 32 0 chr21 3090621 3090807 -31816763 - MIR SINE MIR -11 251 60 822 217 57 12 chr21 3091686 3091930 -31815640 + L1MEc LINE L1 1610 1864 -4532 505 266 109 22 chr21 3093260 3093572 -31813998 + L1MEc LINE L1 1930 2268 -4128 1541 240 44 25 chr21 3093606 3094131 -31813439 + L1MEc LINE L1 2303 2837 -3378 515 153 31 0 chr21 3094167 3094265 -31813305 - L1MB4 LINE L1 -1 6179 6079 323 293 12 60 chr21 3094336 3094503 -31813067 + L1MEc LINE L1 3240 3398 -2817 1290 269 23 52 chr21 3094503 3095229 -31812341 + L1ME1 LINE L1 2892 3596 -2619 661 272 42 39 chr21 3095257 3095588 -31811982 + L1ME1 LINE L1 3863 4194 -2021 473 243 0 29 chr21 3095920 3096056 -31811514 + L1ME1 LINE L1 4517 4648 -1567 1116 123 0 18 chr21 3096060 3096230 -31811340 + THE1C LTR MaLR 1 167 -208 448 125 0 0 chr21 3096231 3096303 -31811267 - Alu SINE Alu -6 305 234 1478 110 28 5 chr21 3096303 3096521 -31811049 + THE1C LTR MaLR 153 375 0 37932 81 10 9 chr21 3096606 3098006 -31809564 + L1PA6 LINE L1 11 1408 -4765 205 29 59 0 chr21 3098006 3098040 -31809530 + (AAATG)n Simple_repeat Simple_repeat 5 40 0 37932 81 10 9 chr21 3098040 3102794 -31804776 + L1PA6 LINE L1 1408 6173 0 1631 230 57 37 chr21 3102908 3103503 -31804067 + L1ME1 LINE L1 4858 5464 -751 2423 227 47 20 chr21 3103534 3104221 -31803349 + L1ME1 LINE L1 5527 6231 -4 249 236 60 126 chr21 3105244 3105426 -31802144 - MLT1I LTR MaLR -19 390 221 485 267 80 27 chr21 3106601 3106751 -31800819 + MLT1F1 LTR MaLR 1 158 -384 2304 91 0 0 chr21 3106761 3107057 -31800513 + AluY SINE Alu 1 296 -15 716 255 39 60 chr21 3107069 3107505 -31800065 + MLT1F1 LTR MaLR 148 624 0 209 57 29 0 chr21 3107671 3107706 -31799864 + (TA)n Simple_repeat Simple_repeat 1 36 0 2328 151 16 3 chr21 3107713 3108078 -31799492 - THE1C LTR MaLR -5 370 1 1723 193 10 13 chr21 3108342 3108653 -31798917 - AluJo SINE Alu -2 310 1 1977 147 0 0 chr21 3109142 3109428 -31798142 - AluSx SINE Alu -24 288 3 1593 171 135 15 chr21 3109655 3109989 -31797581 + MLT1A2 LTR MaLR 1 374 0 919 271 99 43 chr21 3109991 3110363 -31797207 + MSTD LTR MaLR 1 393 -3 214 255 0 0 chr21 3110383 3110430 -31797140 + (ATG)n Simple_repeat Simple_repeat 2 48 0 326 277 69 46 chr21 3110440 3110570 -31797000 - MIR SINE MIR -17 245 113 489 303 85 0 chr21 3111881 3112046 -31795524 - MIR SINE MIR -29 233 55 717 196 94 0 chr21 3112754 3112862 -31794708 + AluJo SINE Alu 12 137 -175 450 0 0 0 chr21 3112862 3112912 -31794658 + (TAA)n Simple_repeat Simple_repeat 2 51 0 717 196 94 0 chr21 3112912 3112941 -31794629 + AluJo SINE Alu 137 162 -150 21 36 0 0 chr21 3113336 3113364 -31794206 + AT_rich Low_complexity Low_complexity 1 28 0 513 288 75 75 chr21 3113365 3113802 -31793768 + L1MEd LINE L1 787 1223 -5149 2669 240 45 31 chr21 3114182 3115968 -31791602 + L1M3 LINE L1 2 1858 -4353 482 253 7 27 chr21 3115966 3116136 -31791434 + L1MEd LINE L1 2351 2517 -3865 436 263 0 0 chr21 3116157 3116256 -31791314 + L1MEd LINE L1 3139 3237 -3145 5946 160 11 19 chr21 3116278 3118162 -31789408 - L1MA2 LINE L1 0 6304 4435 644 161 14 21 chr21 3118210 3118353 -31789217 + L1M3 LINE L1 4316 4457 -1753 35408 49 1 5 chr21 3118350 3123956 -31783614 + L1PA4 LINE L1 555 6155 0 30 0 0 0 chr21 3123985 3124015 -31783555 + AT_rich Low_complexity Low_complexity 1 30 0 3781 187 23 5 chr21 3124022 3124817 -31782753 + L1M3 LINE L1 4462 5270 -940 2098 172 47 15 chr21 3124817 3125223 -31782347 + MSTC LTR MaLR 1 419 -9 963 127 6 105 chr21 3125233 3125486 -31782084 + L1M3 LINE L1 5312 5535 -712 943 115 6 32 chr21 3125486 3125643 -31781927 + LTR19-int LTR ERV1 3445 3597 -1989 2211 47 0 0 chr21 3125643 3125901 -31781669 + AluY SINE Alu 40 297 -14 1965 167 46 28 chr21 3125904 3126299 -31781271 + LTR19-int LTR ERV1 4128 4529 -1417 4413 128 45 36 chr21 3126299 3127133 -31780437 + LTR19-int LTR ERV1 4404 4663 -460 4155 94 23 3 chr21 3127429 3128005 -31779565 + LTR8 LTR ERV1 1 587 -104 5093 161 30 21 chr21 3128013 3129573 -31777997 + L1MA7 LINE L1 4600 6183 -108 2389 62 27 0 chr21 3129573 3129865 -31777705 - AluY SINE Alu -11 300 1 5093 161 30 21 chr21 3129865 3129972 -31777598 + L1MA7 LINE L1 6183 6288 -3 589 194 0 0 chr21 3130040 3130143 -31777427 - Tigger7 DNA MER2_type 0 2487 2385 1434 202 23 4 chr21 3130138 3130400 -31777170 - Tigger7 DNA MER2_type -2220 267 1 877 240 74 15 chr21 3130436 3130847 -31776723 + L1MEc LINE L1 2121 2522 -3693 1234 282 50 3 chr21 3131020 3131403 -31776167 + L1MEc LINE L1 2731 3131 -3084 524 257 9 0 chr21 3131821 3131934 -31775636 + MER81 DNA DNA 1 114 0 210 37 0 0 chr21 3132591 3132618 -31774952 + (CA)n Simple_repeat Simple_repeat 2 28 0 650 164 58 32 chr21 3133793 3133976 -31773594 + L1MB3 LINE L1 5944 6147 -36 750 292 85 4 chr21 3134144 3134380 -31773190 + MIR SINE MIR 3 257 -5 25 83 0 0 chr21 3134708 3134768 -31772802 + AT_rich Low_complexity Low_complexity 1 60 0 22 0 0 0 chr21 3136921 3136943 -31770627 + AT_rich Low_complexity Low_complexity 1 22 0 547 255 107 23 chr21 3137092 3137308 -31770262 + MIR SINE MIR 29 262 0 1336 69 0 6 chr21 3137437 3137610 -31769960 - AluSg/x SINE Alu -3 306 135 180 0 0 0 chr21 3138637 3138657 -31768913 + (A)n Simple_repeat Simple_repeat 1 20 0 2758 16 0 0 chr21 3142344 3142657 -31764913 - L1P1 LINE L1 -478 5677 5365 4476 16 0 0 chr21 3142657 3143201 -31764369 + L1PA2 LINE L1 5642 6190 0 207 288 123 51 chr21 3144251 3144487 -31763083 + L2 LINE L2 2523 2775 -539 202 229 83 0 chr21 3144808 3144856 -31762714 + L2 LINE L2 3261 3312 -1 194 116 23 0 chr21 3145511 3145554 -31762016 + (TA)n Simple_repeat Simple_repeat 1 44 0 2087 115 45 0 chr21 3145608 3145895 -31761675 - AluSx SINE Alu -12 300 1 210 289 40 53 chr21 3146153 3146229 -31761341 - L3 LINE CR1 -11 1566 1492 1700 119 0 4 chr21 3146315 3146551 -31761019 + AluSq SINE Alu 1 235 -78 1623 226 42 53 chr21 3148146 3148672 -31758898 - MLT2B1 LTR ERVL 0 520 1 936 208 98 37 chr21 3149829 3150074 -31757496 - ORSL DNA AcHobo -15 260 1 1980 146 140 8 chr21 3150282 3150660 -31756910 - MSTA LTR MaLR 0 428 1 202 211 19 0 chr21 3150671 3150723 -31756847 + GA-rich Low_complexity Low_complexity 2 54 0 1516 201 16 73 chr21 3150890 3151274 -31756296 - MLT1B LTR MaLR 0 390 29 808 274 39 0 chr21 3151500 3151704 -31755866 + MIR SINE MIR 1 212 -50 497 186 20 29 chr21 3151936 3152038 -31755532 + MIR SINE MIR 118 218 -44 22 35 0 0 chr21 3153087 3153116 -31754454 + AT_rich Low_complexity Low_complexity 1 29 0 1758 181 14 0 chr21 3154129 3154422 -31753148 - AluJb SINE Alu -15 297 1 721 323 103 18 chr21 3155462 3155793 -31751777 - L2 LINE L2 -1 3312 2954 288 311 96 30 chr21 3157676 3157843 -31749727 - MIR SINE MIR -6 256 79 377 221 81 58 chr21 3158393 3158565 -31749005 + MER34 LTR ERV1 367 542 0 2878 146 69 22 chr21 3158724 3159257 -31748313 - LTR1 LTR ERV1 -2 783 226 1035 167 57 29 chr21 3159970 3160215 -31747355 - LTR1 LTR ERV1 -507 278 27 741 250 40 24 chr21 3160777 3161029 -31746541 + MER31-int LTR ERV1 894 1149 -5182 2623 78 20 0 chr21 3161198 3161546 -31746024 + THE1A LTR MaLR 1 355 0 1390 206 21 83 chr21 3161878 3162139 -31745431 + MER31-int LTR ERV1 3330 3555 -1381 2418 179 0 9 chr21 3162139 3162575 -31744995 + L1PB4 LINE L1 5711 6142 -14 1390 206 21 83 chr21 3162575 3162749 -31744821 + MER31-int LTR ERV1 3555 3738 -1198 495 140 130 0 chr21 3162749 3162849 -31744721 - MSTD LTR MaLR 0 396 284 2149 136 21 24 chr21 3162854 3163230 -31744340 - THE1C LTR MaLR 0 375 1 7540 133 9 22 chr21 3163230 3164399 -31743171 - THE1C-int LTR MaLR 0 1580 427 1320 150 59 66 chr21 3164405 3164692 -31742878 + THE1C LTR MaLR 86 370 -5 6923 54 14 1 chr21 3165920 3166988 -31740582 + L1PA7 LINE L1 5073 6152 -2 185 280 0 0 chr21 3167036 3167086 -31740484 + L2 LINE L2 3262 3311 -2 2111 130 3 0 chr21 3167484 3167783 -31739787 - AluSp SINE Alu -13 300 1 195 319 194 9 chr21 3167930 3168146 -31739424 + L2 LINE L2 1992 2247 -1067 267 333 101 14 chr21 3168543 3168681 -31738889 - L2 LINE L2 0 3313 3164 3414 138 23 0 chr21 3168832 3169399 -31738171 - L1PA16 LINE L1 -2 6164 5585 399 281 94 44 chr21 3169809 3169969 -31737601 - MIR SINE MIR -76 186 19 1115 185 13 12 chr21 3170867 3171221 -31736349 + MSTB LTR MaLR 1 426 0 2007 161 51 108 chr21 3171223 3171731 -31735839 + MLT1D LTR MaLR 23 501 -4 614 309 48 27 chr21 3171741 3172071 -31735499 - MLT1I LTR MaLR -61 348 12 1975 244 70 28 chr21 3172775 3173344 -31734226 + MLT1E LTR MaLR 1 593 0 195 277 0 0 chr21 3175073 3175120 -31732450 + MIR3 SINE MIR 118 164 -44 388 261 101 48 chr21 3175121 3175309 -31732261 - MLT1H LTR MaLR 0 549 352 1831 196 37 3 chr21 3176837 3177190 -31730380 - MLT1A1 LTR MaLR 0 365 1 2655 90 3 0 chr21 3177441 3177795 -31729775 - THE1A LTR MaLR 0 355 1 11101 113 2 6 chr21 3177805 3179390 -31728180 - THE1A-int LTR MaLR 0 1580 1 2728 80 8 0 chr21 3179390 3179742 -31727828 - THE1A LTR MaLR 0 355 1 25 0 0 0 chr21 3180735 3180760 -31726810 + AT_rich Low_complexity Low_complexity 1 25 0 1049 165 107 13 chr21 3183304 3183591 -31723979 - MER7A DNA MER2_type 0 336 12 184 318 68 0 chr21 3183809 3183897 -31723673 + L2 LINE L2 1881 1974 -1340 1922 221 31 15 chr21 3183898 3184356 -31723214 + MLT1C LTR MaLR 1 465 -2 1475 203 3 17 chr21 3184501 3184802 -31722768 - AluJo SINE Alu -15 297 1 627 307 72 16 chr21 3184998 3185249 -31722321 + L1ME LINE L1 5425 5689 -432 354 200 67 0 chr21 3185550 3185625 -31721945 - MER33 DNA MER1_type -244 80 1 2181 98 3 10 chr21 3185705 3186000 -31721570 + AluSx SINE Alu 1 293 -19 221 130 43 0 chr21 3187139 3187185 -31720385 + GA-rich Low_complexity Low_complexity 3 50 0 772 212 62 112 chr21 3189323 3189440 -31718130 - MLT1J1 LTR MaLR 0 446 325 324 0 0 0 chr21 3189440 3189476 -31718094 + (TG)n Simple_repeat Simple_repeat 2 37 0 772 212 62 112 chr21 3189476 3189777 -31717793 - MLT1J1 LTR MaLR -121 325 49 262 170 62 10 chr21 3190035 3190334 -31717236 + (TA)n Simple_repeat Simple_repeat 1 314 0 187 160 48 16 chr21 3190348 3190401 -31717169 + (TA)n Simple_repeat Simple_repeat 2 52 -78 2245 118 0 0 chr21 3190401 3190706 -31716864 + AluSc SINE Alu 1 305 -4 187 160 48 16 chr21 3190706 3190777 -31716793 + (TA)n Simple_repeat Simple_repeat 52 130 0 27 49 0 0 chr21 3193268 3193309 -31714261 + AT_rich Low_complexity Low_complexity 1 41 0 195 42 0 0 chr21 3194757 3194781 -31712789 + (A)n Simple_repeat Simple_repeat 1 24 0 368 325 20 66 chr21 3194854 3195051 -31712519 - MIR3 SINE MIR -2 206 19 365 289 70 0 chr21 3195202 3195330 -31712240 + MIR3 SINE MIR 65 201 -7 1733 135 126 33 chr21 3196231 3196564 -31711006 - THE1B LTR MaLR 0 364 1 541 265 22 44 chr21 3198317 3198498 -31709072 - MER5B DNA MER1_type -1 177 1 1457 137 47 94 chr21 3198882 3199223 -31708347 + AluSq SINE Alu 1 327 0 866 212 6 6 chr21 3199227 3199392 -31708178 + FRAM SINE Alu 1 164 -12 2354 143 0 14 chr21 3199507 3199877 -31707693 - MLT1A1 LTR MaLR 0 365 1 210 225 0 0 chr21 3199991 3200031 -31707539 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 2153 127 3 13 chr21 3200431 3200747 -31706823 + AluSq SINE Alu 1 313 0 222 353 0 12 chr21 3200821 3200906 -31706664 - MIR3 SINE MIR -1 207 124 427 295 34 75 chr21 3201384 3201652 -31705918 + MIR SINE MIR 6 262 0 23 0 0 0 chr21 3202366 3202389 -31705181 + AT_rich Low_complexity Low_complexity 1 23 0 2947 6 0 0 chr21 3202455 3202773 -31704797 + AluYb8 SINE Alu 1 318 0 1414 209 136 15 chr21 3202854 3203184 -31704386 + MLT1A2 LTR MaLR 1 370 -4 29 28 0 0 chr21 3203639 3203675 -31703895 + AT_rich Low_complexity Low_complexity 1 36 0 380 275 104 85 chr21 3204422 3204633 -31702937 - MIR SINE MIR 0 262 48 1587 65 97 0 chr21 3204982 3205199 -31702371 - AluSg SINE Alu -72 238 1 217 0 29 29 chr21 3205621 3205655 -31701915 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 320 250 12 0 chr21 3206142 3206226 -31701344 - MIR SINE MIR 0 262 178 1594 162 48 101 chr21 3207570 3207945 -31699625 + MLT2C1 LTR ERVL 1 355 -42 4200 132 50 8 chr21 3207945 3208666 -31698904 - Tigger3(Golem) DNA MER2_type -2 3027 2277 507 214 10 10 chr21 3208657 3208760 -31698810 - Tigger3(Golem) DNA MER2_type -2921 108 6 28 71 0 0 chr21 3208849 3208905 -31698665 + AT_rich Low_complexity Low_complexity 1 56 0 376 235 47 0 chr21 3208905 3209075 -31698495 + (TA)n Simple_repeat Simple_repeat 1 178 0 116 83 0 0 chr21 3209102 3209379 -31698191 + AT_rich Low_complexity Low_complexity 1 277 0 90 89 0 0 chr21 3209395 3209632 -31697938 + AT_rich Low_complexity Low_complexity 1 237 0 459 220 42 0 chr21 3209637 3209805 -31697765 + (TA)n Simple_repeat Simple_repeat 2 176 0 501 262 33 11 chr21 3209828 3210011 -31697559 - LTR33 LTR ERVL -7 514 328 1838 128 3 18 chr21 3210281 3210563 -31697007 + AluJb SINE Alu 35 312 0 294 73 0 0 chr21 3211522 3211563 -31696007 + (TG)n Simple_repeat Simple_repeat 1 41 0 928 259 13 0 chr21 3212275 3212507 -31695063 + MIR SINE MIR 28 262 0 508 275 53 8 chr21 3213759 3213890 -31693680 + L2 LINE L2 3175 3311 -2 310 314 0 0 chr21 3214681 3214751 -31692819 + L2 LINE L2 3202 3271 -1 733 52 0 0 chr21 3214953 3215049 -31692521 - AluY SINE Alu -3 308 213 2393 73 0 0 chr21 3215470 3215772 -31691798 + AluY SINE Alu 1 302 -9 459 321 73 37 chr21 3216116 3216362 -31691208 + MIR SINE MIR 2 256 -6 2139 121 0 32 chr21 3216790 3217103 -31690467 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr21 3217459 3217482 -31690088 + AT_rich Low_complexity Low_complexity 1 23 0 1681 181 0 7 chr21 3218120 3218426 -31689144 + AluJb SINE Alu 3 306 0 2030 123 0 3 chr21 3220441 3220733 -31686837 + AluSc SINE Alu 1 291 -18 14018 173 14 17 chr21 3221911 3223815 -31683755 - L1MA3 LINE L1 -7 7717 5809 2167 85 0 0 chr21 3223815 3224127 -31683443 - AluY SINE Alu 0 312 1 14018 173 14 17 chr21 3224127 3226879 -31680691 - L1MA3 LINE L1 -1915 5809 3071 1027 159 90 5 chr21 3226883 3227072 -31680498 - AluJb SINE Alu -3 309 105 630 155 10 0 chr21 3227111 3227214 -31680356 - AluJb SINE Alu -185 127 24 16825 135 17 27 chr21 3227226 3228103 -31679467 - L1MA3 LINE L1 -4488 3077 2193 1659 196 6 19 chr21 3228103 3228415 -31679155 - AluJb SINE Alu 0 312 5 16825 135 17 27 chr21 3228415 3230449 -31677121 - L1MA3 LINE L1 -5372 2193 195 908 116 0 0 chr21 3230450 3230588 -31676982 + L1P LINE L1 3675 3812 -2334 955 74 0 20 chr21 3230605 3230753 -31676817 - L1P LINE L1 -1429 4717 4573 2490 66 0 0 chr21 3230754 3231073 -31676497 + L1PA7 LINE L1 5828 6146 -8 1059 151 26 0 chr21 3231087 3231279 -31676291 - L1MA3 LINE L1 -7357 208 12 342 43 0 0 chr21 3232158 3232205 -31675365 - MADE1 DNA Mariner 0 80 34 35 83 0 0 chr21 3232520 3232604 -31674966 + AT_rich Low_complexity Low_complexity 1 84 0 24 32 0 0 chr21 3232642 3232673 -31674897 + AT_rich Low_complexity Low_complexity 1 31 0 711 184 31 117 chr21 3233284 3233507 -31674063 - MER20 DNA MER1_type -1 218 15 587 210 25 12 chr21 3236615 3236777 -31670793 - L1ME2 LINE L1 -1 6232 6069 1887 240 86 29 chr21 3236782 3237529 -31670041 - L1ME2 LINE L1 -184 6047 5257 2128 113 0 19 chr21 3237784 3238102 -31669468 - AluSx SINE Alu 0 312 1 191 146 24 0 chr21 3238166 3238207 -31669363 + (TATG)n Simple_repeat Simple_repeat 2 43 0 662 235 49 6 chr21 3238212 3238395 -31669175 - L1ME2 LINE L1 -1301 4914 4724 865 221 55 58 chr21 3238417 3238598 -31668972 - L1ME2 LINE L1 -1726 4489 4308 2497 62 0 7 chr21 3238598 3238903 -31668667 - AluY SINE Alu -8 303 1 865 221 55 58 chr21 3238903 3239047 -31668523 - L1ME2 LINE L1 -1907 4308 4165 577 321 54 24 chr21 3239150 3240015 -31667555 - L1ME2 LINE L1 -4644 1573 831 291 125 62 21 chr21 3240032 3240128 -31667442 + (TTATA)n Simple_repeat Simple_repeat 1 100 0 316 23 0 93 chr21 3240140 3240226 -31667344 + (TTTA)n Simple_repeat Simple_repeat 3 80 0 779 296 96 54 chr21 3242765 3243320 -31664250 + HAL1 LINE L1 1080 1657 -850 35611 31 0 1 chr21 3244785 3250816 -31656754 + L1PA2 LINE L1 1 6155 0 356 253 46 0 chr21 3251462 3251549 -31656021 - MIR SINE MIR -6 256 166 21 0 0 0 chr21 3251559 3251580 -31655990 + AT_rich Low_complexity Low_complexity 1 21 0 38078 64 9 0 chr21 3251580 3257643 -31649927 - L1PA5 LINE L1 -3 6466 10 1979 141 10 13 chr21 3257658 3257964 -31649606 - AluSx SINE Alu -7 305 1 373 284 121 0 chr21 3258527 3258643 -31648927 + MIR3 SINE MIR 9 138 -70 2462 43 40 10 chr21 3259438 3259740 -31647830 - AluY SINE Alu 0 311 1 458 52 0 0 chr21 3259778 3259836 -31647734 - MER72 LTR ERV1 -30 692 635 445 293 9 17 chr21 3260416 3260532 -31647038 - MIR3 SINE MIR -48 160 46 902 281 94 50 chr21 3262495 3262608 -31644962 + L2 LINE L2 1852 1959 -1355 3161 191 56 60 chr21 3262608 3263503 -31644067 + MER97a DNA MER1_type 2 892 -2 902 281 94 50 chr21 3263503 3263891 -31643679 + L2 LINE L2 1959 2375 -939 2125 111 0 14 chr21 3264259 3264586 -31642984 + AluSx SINE Alu 1 323 0 365 342 93 34 chr21 3264653 3264890 -31642680 + L2 LINE L2 3022 3272 0 369 0 0 0 chr21 3266031 3266072 -31641498 + (TG)n Simple_repeat Simple_repeat 2 42 0 1788 214 72 35 chr21 3266313 3266800 -31640770 - MLT1D LTR MaLR 0 505 1 454 270 36 40 chr21 3267129 3267377 -31640193 + L1ME4a LINE L1 5635 5881 -240 548 278 34 25 chr21 3267467 3267766 -31639804 - MLT1G3 LTR MaLR -181 414 8 26 30 0 0 chr21 3267928 3267961 -31639609 + AT_rich Low_complexity Low_complexity 1 33 0 455 286 54 47 chr21 3269870 3270167 -31637403 + L1MB2 LINE L1 5630 5928 -243 1231 175 36 10 chr21 3269905 3270510 -31637060 + L1MC2 LINE L1 5661 6318 -26 2716 252 42 13 chr21 3271000 3271080 -31636490 + L1M4b LINE L1 29 105 -6754 2060 136 3 7 chr21 3271080 3271388 -31636182 + AluSx SINE Alu 1 307 -5 2716 252 42 13 chr21 3271388 3271978 -31635592 + L1M4b LINE L1 105 718 -6141 949 122 0 0 chr21 3272818 3272966 -31634604 + AluSg/x SINE Alu 163 310 0 201 298 0 0 chr21 3274101 3274148 -31633422 - L2 LINE L2 0 3272 3226 1153 116 0 3 chr21 3274158 3274390 -31633180 + AluSx SINE Alu 11 301 -9 379 35 35 0 chr21 3279702 3279759 -31627811 + (TA)n Simple_repeat Simple_repeat 1 59 0 481 241 68 56 chr21 3281323 3281485 -31626085 - MER5A DNA MER1_type -3 186 23 487 220 25 8 chr21 3287818 3287936 -31619634 + MER104 DNA MER2_type 56 175 -5 2231 120 0 0 chr21 3287970 3288271 -31619299 + AluSx SINE Alu 1 301 -11 2082 132 60 3 chr21 3290366 3290685 -31616885 - MER1B DNA MER1_type 0 337 1 1759 169 0 32 chr21 3291385 3291693 -31615877 - AluJb SINE Alu -14 298 1 3051 180 55 53 chr21 3291718 3292534 -31615036 - Looper DNA T2_type 0 1558 741 1619 183 0 18 chr21 3292534 3292818 -31614752 + AluJb SINE Alu 1 279 -33 1008 185 82 63 chr21 3292857 3293176 -31614394 - Looper DNA T2_type -806 752 428 789 198 12 58 chr21 3293181 3293353 -31614217 + FRAM SINE Alu 1 164 -2 183 156 0 0 chr21 3293364 3293396 -31614174 + GA-rich Low_complexity Low_complexity 2 33 0 1020 199 77 11 chr21 3293411 3293672 -31613898 - Looper DNA T2_type -1127 431 154 944 98 0 0 chr21 3297407 3297530 -31610040 - AluSg1 SINE Alu -186 123 1 21 0 0 0 chr21 3297899 3297920 -31609650 + AT_rich Low_complexity Low_complexity 1 21 0 1839 117 61 0 chr21 3297925 3298223 -31609347 + AluSg SINE Alu 1 314 0 1865 159 10 3 chr21 3299569 3299865 -31607705 - AluJb SINE Alu -12 300 3 22 0 0 0 chr21 3299970 3299992 -31607578 + AT_rich Low_complexity Low_complexity 1 22 0 12099 129 58 67 chr21 3300363 3302799 -31604771 + Tigger1 DNA MER2_type 5 2418 0 588 149 0 0 chr21 3303211 3303298 -31604272 - AluS SINE Alu -225 88 2 22 0 0 0 chr21 3303715 3303737 -31603833 + AT_rich Low_complexity Low_complexity 1 22 0 366 325 49 43 chr21 3304665 3304828 -31602742 - L3 LINE CR1 0 1577 1414 684 255 73 10 chr21 3305834 3306026 -31601544 + MIR SINE MIR 56 259 -3 500 44 0 15 chr21 3306139 3306207 -31601363 + (TAGA)n Simple_repeat Simple_repeat 1 67 0 234 191 0 0 chr21 3306207 3306254 -31601316 + (TA)n Simple_repeat Simple_repeat 2 48 0 219 69 0 0 chr21 3306652 3306681 -31600889 + (GGAGA)n Simple_repeat Simple_repeat 4 32 0 242 234 25 67 chr21 3306975 3307093 -31600477 - MIR SINE MIR -61 147 33 1533 160 10 41 chr21 3309773 3310066 -31597504 - AluJo SINE Alu -27 285 2 1236 142 9 24 chr21 3311303 3311514 -31596056 + AluJo SINE Alu 86 293 -19 2034 103 0 0 chr21 3311863 3312124 -31595446 - AluSx SINE Alu -31 281 21 282 308 69 30 chr21 3312894 3313064 -31594506 + MIR SINE MIR 10 186 -59 258 32 0 0 chr21 3313477 3313508 -31594062 + (TG)n Simple_repeat Simple_repeat 2 32 0 556 307 49 96 chr21 3313521 3313748 -31593822 + L2 LINE L2 2644 2880 -433 827 206 120 17 chr21 3313748 3314040 -31593530 - MER33 DNA MER1_type -2 322 1 556 307 49 96 chr21 3314040 3314421 -31593149 + L2 LINE L2 2880 3238 -75 35 0 0 0 chr21 3314552 3314587 -31592983 + AT_rich Low_complexity Low_complexity 1 35 0 250 176 24 0 chr21 3315406 3315491 -31592079 + (TA)n Simple_repeat Simple_repeat 2 88 0 479 263 25 0 chr21 3315492 3315610 -31591960 - MIR SINE MIR -47 215 95 2397 156 35 9 chr21 3316271 3316694 -31590876 + Tigger2a DNA MER2_type 1 434 0 1324 193 110 0 chr21 3316742 3316996 -31590574 - AluJo SINE Alu -30 282 1 439 315 40 0 chr21 3318057 3318206 -31589364 - L2 LINE L2 0 3313 3159 231 88 0 0 chr21 3320193 3320227 -31587343 + (CA)n Simple_repeat Simple_repeat 2 35 0 647 241 53 0 chr21 3326460 3326630 -31580940 + Charlie1 DNA MER1_type 1 179 -2582 653 202 16 0 chr21 3326655 3326784 -31580786 + Charlie1 DNA MER1_type 2631 2761 0 2417 52 0 0 chr21 3328918 3329206 -31578364 - AluY SINE Alu -21 290 3 26 30 0 0 chr21 3329217 3329250 -31578320 + AT_rich Low_complexity Low_complexity 1 33 0 265 108 0 0 chr21 3329947 3329984 -31577586 - MER103 DNA DNA -126 40 4 2215 112 7 0 chr21 3330167 3330470 -31577100 - AluSg SINE Alu -5 305 1 224 354 77 22 chr21 3331789 3331970 -31575600 + L2 LINE L2 3115 3305 -8 21 57 0 0 chr21 3332491 3332526 -31575044 + AT_rich Low_complexity Low_complexity 1 35 0 1216 222 25 39 chr21 3332660 3333015 -31574555 + L1ME1 LINE L1 5664 6013 -153 577 161 45 0 chr21 3333018 3333130 -31574440 + L1MA10 LINE L1 6209 6325 -9 476 247 68 56 chr21 3333137 3333477 -31574093 + L1ME4a LINE L1 5589 5932 -189 2262 93 7 3 chr21 3334322 3334755 -31572815 + AluY SINE Alu 1 434 0 832 148 0 8 chr21 3334948 3335076 -31572494 - FLAM_A SINE Alu -6 127 1 608 276 143 0 chr21 3335185 3335381 -31572189 - MIR SINE MIR 0 262 39 428 342 154 26 chr21 3336130 3336364 -31571206 - L2 LINE L2 -226 3087 2824 682 210 78 47 chr21 3336559 3336816 -31570754 - L1M4 LINE L1 -2008 4138 3874 44 20 0 0 chr21 3336838 3336889 -31570681 + AT_rich Low_complexity Low_complexity 1 51 0 435 117 26 26 chr21 3336929 3337006 -31570564 + L1MB8 LINE L1 4018 4094 -2052 308 260 83 30 chr21 3337022 3337191 -31570379 + L1MB8 LINE L1 4157 4334 -1812 2336 112 3 0 chr21 3337196 3337507 -31570063 - AluSx SINE Alu 0 312 1 382 123 0 0 chr21 3337602 3337659 -31569911 + AluJ/FLAM SINE Alu 2 58 -244 311 249 30 17 chr21 3337660 3337815 -31569755 + L1MB8 LINE L1 4442 4599 -1547 2376 220 63 50 chr21 3337807 3339298 -31568272 + L1ME1 LINE L1 4614 6161 -5 21 82 0 0 chr21 3339310 3339359 -31568211 + AT_rich Low_complexity Low_complexity 1 49 0 6161 99 23 2 chr21 3339382 3340282 -31567288 + L1PA11 LINE L1 5254 6172 -2 1936 183 54 17 chr21 3340413 3340965 -31566605 + L1MB8 LINE L1 5526 6176 -2 398 309 78 20 chr21 3341289 3341584 -31565986 + L1ME LINE L1 4496 4807 -1339 646 287 53 40 chr21 3341659 3341959 -31565611 + L1ME LINE L1 4910 5213 -933 2040 93 37 0 chr21 3341985 3342254 -31565316 + AluSq SINE Alu 6 284 -29 363 23 0 0 chr21 3342287 3342331 -31565239 + (TG)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr21 3342504 3342530 -31565040 + AT_rich Low_complexity Low_complexity 1 26 0 474 245 36 7 chr21 3342566 3342705 -31564865 + L1ME LINE L1 5321 5463 -707 369 217 101 16 chr21 3342951 3343080 -31564490 + L1MC4a LINE L1 6443 6582 -1226 2038 238 64 14 chr21 3343089 3343831 -31563739 + L1MC4 LINE L1 6927 7864 -178 776 286 65 19 chr21 3343914 3344321 -31563249 + L1ME3A LINE L1 5294 5725 -437 212 0 0 35 chr21 3344386 3344415 -31563155 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 336 289 118 5 chr21 3344433 3344575 -31562995 + L1ME3A LINE L1 5735 5887 -275 1199 85 40 0 chr21 3344578 3344755 -31562815 + L1MA1 LINE L1 6118 6301 -1 1226 260 178 10 chr21 3346570 3346981 -31560589 + L2 LINE L2 2277 2756 -558 798 256 52 63 chr21 3347037 3347385 -31560185 + L2 LINE L2 2953 3296 -17 712 174 38 0 chr21 3347406 3347538 -31560032 + FRAM SINE Alu 17 153 -23 213 39 0 0 chr21 3347541 3347567 -31560003 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 242 240 125 31 chr21 3347852 3347948 -31559622 + MLT1L LTR MaLR 371 475 -140 267 238 16 0 chr21 3348409 3348472 -31559098 + GA-rich Low_complexity Low_complexity 3 66 0 2474 67 0 0 chr21 3350665 3350963 -31556607 + AluY SINE Alu 3 300 -11 669 216 72 41 chr21 3350967 3351161 -31556409 - MIR SINE MIR -24 238 39 221 241 287 0 chr21 3351405 3351492 -31556078 - MIR SINE MIR -59 203 92 28 0 0 0 chr21 3352511 3352539 -31555031 + AT_rich Low_complexity Low_complexity 1 28 0 365 266 105 16 chr21 3352672 3352796 -31554774 - MIR SINE MIR -40 222 88 24 0 0 0 chr21 3352935 3352959 -31554611 + AT_rich Low_complexity Low_complexity 1 24 0 2178 82 0 4 chr21 3353276 3353557 -31554013 - AluSg SINE Alu -12 298 19 367 294 61 78 chr21 3356612 3356843 -31550727 - L2 LINE L2 -71 3242 3016 256 243 171 0 chr21 3356829 3356899 -31550671 - L2 LINE L2 -511 2803 2722 1110 163 71 77 chr21 3357795 3358121 -31549449 + MER33 DNA MER1_type 1 324 0 753 278 65 47 chr21 3358661 3359110 -31548460 + L1ME3A LINE L1 5585 6041 -129 25 65 0 0 chr21 3359563 3359609 -31547961 + AT_rich Low_complexity Low_complexity 1 46 0 1956 164 25 8 chr21 3360184 3360543 -31547027 + MLT1A1 LTR MaLR 1 365 0 2242 102 0 0 chr21 3361534 3361838 -31545732 - AluSx SINE Alu -8 304 1 273 294 0 15 chr21 3362583 3362651 -31544919 + L2 LINE L2 3206 3272 0 11087 123 10 3 chr21 3363003 3364757 -31542813 - Tigger1 DNA MER2_type -1 2417 651 1360 99 32 32 chr21 3364758 3364979 -31542591 - THE1C LTR MaLR -2 373 153 2349 68 3 0 chr21 3364979 3365272 -31542298 + AluY SINE Alu 1 294 -17 1326 60 24 0 chr21 3365286 3365454 -31542116 - THE1C LTR MaLR -203 172 1 3886 134 53 6 chr21 3365454 3366086 -31541484 - Tigger1 DNA MER2_type -1755 663 2 636 187 107 13 chr21 3368406 3368556 -31539014 + MER74B LTR ERVL 66 229 -393 267 258 114 18 chr21 3368788 3368955 -31538615 - MER88 LTR ERVL -218 246 64 183 80 0 0 chr21 3368992 3369017 -31538553 + (TG)n Simple_repeat Simple_repeat 2 26 0 213 315 41 0 chr21 3372454 3372527 -31535043 - L2 LINE L2 -8 3264 3189 226 269 0 43 chr21 3373657 3373750 -31533820 + A-rich Low_complexity Low_complexity 2 90 0 420 284 19 45 chr21 3375444 3375599 -31531971 + MIR SINE MIR 80 230 -32 222 118 0 0 chr21 3377245 3377279 -31530291 + (GGGA)n Simple_repeat Simple_repeat 4 37 0 27 0 0 0 chr21 3382252 3382279 -31525291 + GC_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr21 3382328 3382364 -31525206 + GC_rich Low_complexity Low_complexity 1 36 0 200 180 0 49 chr21 3382590 3382651 -31524919 + (CGGG)n Simple_repeat Simple_repeat 3 60 0 1257 178 56 44 chr21 3386383 3386703 -31520867 - MER33 DNA MER1_type 0 324 1 252 0 0 0 chr21 3388025 3388053 -31519517 + (CA)n Simple_repeat Simple_repeat 2 29 0 2380 169 45 13 chr21 3388061 3388698 -31518872 + L1ME LINE L1 4876 5530 -644 2459 203 91 0 chr21 3388710 3389218 -31518352 - MLT1F1 LTR MaLR -13 554 1 207 0 0 0 chr21 3390671 3390694 -31516876 + (TG)n Simple_repeat Simple_repeat 2 24 0 265 325 12 0 chr21 3390963 3391043 -31516527 - LTR67 LTR ERVL -363 194 114 2347 175 28 0 chr21 3391296 3391695 -31515875 - MSTB2 LTR MaLR 0 457 48 679 91 9 9 chr21 3391695 3391805 -31515765 + (TTCTC)n Simple_repeat Simple_repeat 3 112 0 1792 174 17 7 chr21 3391810 3392108 -31515462 - AluJb SINE Alu -11 301 1 413 109 0 31 chr21 3392108 3392172 -31515398 - MSTB2 LTR MaLR -395 62 1 1399 188 37 51 chr21 3394015 3394425 -31513145 - MER104 DNA MER2_type -38 1857 1283 207 0 0 0 chr21 3396591 3396614 -31510956 + (CA)n Simple_repeat Simple_repeat 2 24 0 297 267 56 11 chr21 3397635 3397725 -31509845 + L2 LINE L2 3177 3270 -2 647 299 51 82 chr21 3399263 3399772 -31507798 - MLT1K LTR MaLR -69 519 27 22 0 0 0 chr21 3400241 3400263 -31507307 + AT_rich Low_complexity Low_complexity 1 22 0 301 235 12 12 chr21 3401465 3401550 -31506020 + MLT1E1 LTR MaLR 570 654 0 383 291 132 30 chr21 3401760 3401994 -31505576 + L1ME LINE L1 5531 5788 -333 324 0 0 0 chr21 3402193 3402229 -31505341 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 0 0 0 chr21 3405001 3405024 -31502546 + (A)n Simple_repeat Simple_repeat 1 23 0 184 213 82 33 chr21 3405646 3405707 -31501863 + L3 LINE CR1 1513 1576 -1 1886 103 127 24 chr21 3406732 3407072 -31500498 + THE1C LTR MaLR 1 375 0 200 224 52 0 chr21 3407242 3407300 -31500270 + (TATATG)n Simple_repeat Simple_repeat 4 64 0 189 0 0 0 chr21 3407897 3407918 -31499652 + (TA)n Simple_repeat Simple_repeat 1 21 0 263 355 64 0 chr21 3408079 3408220 -31499350 + L1ME3 LINE L1 5492 5641 -529 248 200 9 45 chr21 3408270 3408380 -31499190 + A-rich Low_complexity Low_complexity 6 111 0 369 333 51 9 chr21 3408380 3408596 -31498974 + L1ME3 LINE L1 5716 5940 -222 346 276 10 10 chr21 3408734 3408832 -31498738 + L1MC4 LINE L1 7929 8026 -16 439 221 194 28 chr21 3409381 3409598 -31497972 + L1ME LINE L1 5571 5823 -298 1534 187 10 27 chr21 3409633 3409927 -31497643 + AluJo SINE Alu 1 289 -23 422 217 142 17 chr21 3410611 3410731 -31496839 + L2 LINE L2 3138 3272 0 227 346 45 40 chr21 3411311 3411513 -31496057 + L3 LINE CR1 1077 1279 -298 25 31 0 0 chr21 3412364 3412396 -31495174 + AT_rich Low_complexity Low_complexity 1 32 0 325 374 91 0 chr21 3414871 3415058 -31492512 + L1MC/D LINE L1 5419 5622 -2186 1817 146 23 16 chr21 3415166 3415475 -31492095 + AluSx SINE Alu 1 311 -1 24 67 0 0 chr21 3415627 3415672 -31491898 + AT_rich Low_complexity Low_complexity 1 45 0 223 186 0 0 chr21 3415791 3415834 -31491736 + T-rich Low_complexity Low_complexity 1 43 0 1779 233 40 13 chr21 3417429 3417906 -31489664 - MLT1E2 LTR MaLR 0 626 137 279 0 0 0 chr21 3418030 3418061 -31489509 + (CTA)n Simple_repeat Simple_repeat 3 33 0 505 295 75 20 chr21 3418083 3418283 -31489287 - MIR SINE MIR -34 228 18 2581 61 0 0 chr21 3419830 3420141 -31487429 + AluY SINE Alu 1 311 0 659 201 91 41 chr21 3422325 3422544 -31485026 + MIR SINE MIR 33 262 0 268 170 0 0 chr21 3422774 3422821 -31484749 - L2 LINE L2 0 3313 3267 851 114 0 30 chr21 3423829 3423960 -31483610 - AluJb SINE Alu -185 127 1 387 0 0 0 chr21 3424716 3424759 -31482811 + (TG)n Simple_repeat Simple_repeat 1 43 0 275 350 103 41 chr21 3425357 3425677 -31481893 - L2 LINE L2 -9 3263 2924 1996 213 61 49 chr21 3425687 3425896 -31481674 - L1MD2 LINE L1 -12 6347 6142 360 64 0 0 chr21 3425896 3425943 -31481627 + (TG)n Simple_repeat Simple_repeat 2 48 0 1996 213 61 49 chr21 3425943 3426386 -31481184 - L1MD2 LINE L1 -217 6142 5687 399 308 27 36 chr21 3427553 3427624 -31479946 + L1ME LINE L1 5527 5597 -524 2111 147 0 0 chr21 3427624 3427931 -31479639 - AluSx SINE Alu -5 307 1 399 308 27 36 chr21 3427931 3428080 -31479490 + L1ME LINE L1 5597 5745 -376 22 0 0 0 chr21 3428084 3428106 -31479464 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr21 3428778 3428802 -31478768 + AT_rich Low_complexity Low_complexity 1 24 0 719 281 60 23 chr21 3428977 3429387 -31478183 + L1ME LINE L1 5456 5881 -283 21 0 0 0 chr21 3432122 3432143 -31475427 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 3432450 3432486 -31475084 + AT_rich Low_complexity Low_complexity 1 36 0 25 27 0 68 chr21 3432575 3432605 -31474965 + AT_rich Low_complexity Low_complexity 1 31 -37 1676 143 8 16 chr21 3432605 3432856 -31474714 + AluSx SINE Alu 37 285 -27 25 27 0 68 chr21 3432856 3432872 -31474698 + AT_rich Low_complexity Low_complexity 31 47 -21 189 0 0 0 chr21 3432872 3432893 -31474677 + (TG)n Simple_repeat Simple_repeat 2 22 0 25 27 0 68 chr21 3432893 3432918 -31474652 + AT_rich Low_complexity Low_complexity 47 68 0 263 191 15 0 chr21 3433008 3433076 -31474494 + GA-rich Low_complexity Low_complexity 3 71 0 2310 102 3 0 chr21 3434047 3434342 -31473228 + AluSp SINE Alu 1 296 -17 701 186 0 0 chr21 3434392 3434521 -31473049 + MLT1A1 LTR MaLR 231 359 -6 272 295 18 54 chr21 3434858 3434970 -31472600 - MIR SINE MIR -115 147 40 1721 185 0 17 chr21 3435399 3435691 -31471879 + AluJb SINE Alu 1 287 -25 1600 166 98 0 chr21 3436199 3436464 -31471106 + AluJb SINE Alu 1 291 -21 2104 91 0 0 chr21 3436471 3436734 -31470836 + AluSg SINE Alu 39 301 -9 527 43 14 0 chr21 3437977 3438047 -31469523 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 213 288 50 0 chr21 3439059 3439139 -31468431 - L2 LINE L2 -3 3310 3227 426 330 36 13 chr21 3439259 3439483 -31468087 - L2 LINE L2 -1256 2058 1830 726 259 59 30 chr21 3440536 3440772 -31466798 + MIR SINE MIR 19 261 -1 1941 137 3 0 chr21 3443524 3443808 -31463762 + AluSx SINE Alu 1 285 -27 21 57 0 0 chr21 3444351 3444386 -31463184 + AT_rich Low_complexity Low_complexity 1 35 0 294 73 0 0 chr21 3446011 3446052 -31461518 + (CA)n Simple_repeat Simple_repeat 2 42 0 487 313 0 0 chr21 3446416 3446531 -31461039 + MIR SINE MIR 2 116 -146 1629 144 45 27 chr21 3446544 3446836 -31460734 - THE1B LTR MaLR -67 297 1 329 291 77 56 chr21 3447085 3447281 -31460289 - L2 LINE L2 -33 3280 3081 1044 143 5 16 chr21 3447530 3447719 -31459851 + MER20 DNA MER1_type 33 219 0 213 303 19 18 chr21 3447727 3447890 -31459680 - L2 LINE L2 -499 2815 2579 2192 167 32 41 chr21 3449934 3450370 -31457200 + MSTB1 LTR MaLR 1 432 0 403 353 0 15 chr21 3450492 3450625 -31456945 - L2 LINE L2 -20 3293 3163 286 289 106 0 chr21 3450694 3450798 -31456772 - L2 LINE L2 -273 3040 2926 2010 176 56 40 chr21 3450813 3451302 -31456268 - MLT1D LTR MaLR -4 563 4 182 140 0 20 chr21 3451693 3451743 -31455827 + (CAAAAA)n Simple_repeat Simple_repeat 6 54 0 208 197 14 0 chr21 3453773 3453826 -31453744 - MIR SINE MIR -36 172 113 189 262 0 0 chr21 3454194 3454236 -31453334 + L2 LINE L2 3213 3254 -18 1858 163 3 7 chr21 3454807 3455108 -31452462 + AluJb SINE Alu 1 300 -12 279 0 0 0 chr21 3455849 3455880 -31451690 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 225 0 28 chr21 3456949 3457020 -31450550 + A-rich Low_complexity Low_complexity 2 70 0 316 285 80 35 chr21 3459026 3459189 -31448381 - MIR SINE MIR -63 145 22 1759 142 0 74 chr21 3459678 3460015 -31447555 - AluJb SINE Alu 0 312 1 503 326 47 5 chr21 3460306 3460499 -31447071 - MIR SINE MIR -13 249 49 251 352 119 19 chr21 3460920 3461230 -31446340 + L2 LINE L2 2230 2570 -744 1048 186 0 0 chr21 3461583 3461755 -31445815 + FAM SINE Alu 1 172 -3 690 243 62 55 chr21 3461787 3462059 -31445511 + Charlie8 DNA MER1_type 2 275 -2142 1852 169 52 72 chr21 3462069 3462406 -31445164 + L1MC3 LINE L1 7302 7644 -398 1971 147 4 0 chr21 3462406 3462685 -31444885 - AluSx SINE Alu -22 290 11 1852 169 52 72 chr21 3462685 3462819 -31444751 + L1MC3 LINE L1 7644 8037 -5 2349 55 10 0 chr21 3463880 3464173 -31443397 - AluY SINE Alu -15 296 1 344 80 0 0 chr21 3464175 3464225 -31443345 + MADE1 DNA Mariner 31 80 0 577 168 15 44 chr21 3466784 3466921 -31440649 - MER3 DNA MER1_type 0 209 77 1999 126 14 0 chr21 3468059 3468344 -31439226 - AluSx SINE Alu -11 301 13 844 249 28 0 chr21 3469563 3469776 -31437794 - MER20 DNA MER1_type 0 219 1 205 259 0 17 chr21 3470752 3470810 -31436760 + CT-rich Low_complexity Low_complexity 5 61 0 948 320 34 29 chr21 3472179 3472602 -31434968 + MER115 DNA AcHobo 29 428 -265 2239 89 61 19 chr21 3472602 3472962 -31434608 - THE1C LTR MaLR 0 375 1 948 320 34 29 chr21 3472962 3473230 -31434340 + MER115 DNA AcHobo 428 693 0 369 0 0 0 chr21 3473526 3473567 -31434003 + (CA)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 3473777 3473799 -31433771 + AT_rich Low_complexity Low_complexity 1 22 0 220 356 176 17 chr21 3475121 3475643 -31431927 - L2 LINE L2 -2047 1267 663 234 361 39 13 chr21 3475842 3475997 -31431573 - L2 LINE L2 -2934 380 222 2111 127 41 36 chr21 3476494 3476856 -31430714 + THE1B LTR MaLR 1 364 0 398 211 13 0 chr21 3479272 3479348 -31428222 + L2 LINE L2 3195 3271 -42 2218 131 0 3 chr21 3479445 3479759 -31427811 - AluSq SINE Alu 0 313 1 2552 175 24 13 chr21 3479760 3480292 -31427278 + L1MB8 LINE L1 5631 6168 -10 300 284 78 0 chr21 3481418 3481520 -31426050 - MIR SINE MIR -65 197 88 23 0 0 0 chr21 3481557 3481580 -31425990 + AT_rich Low_complexity Low_complexity 1 23 0 1704 231 21 21 chr21 3481580 3481742 -31425828 - L1MA9 LINE L1 -38 6274 6113 2321 83 3 0 chr21 3481742 3482044 -31425526 - AluY SINE Alu -8 303 1 1704 231 21 21 chr21 3482044 3482365 -31425205 - L1MA9 LINE L1 -198 6114 5791 218 309 15 0 chr21 3484283 3484351 -31423219 + L2 LINE L2 3242 3310 -3 244 241 25 51 chr21 3484644 3484723 -31422847 - MIR3 SINE MIR -127 81 5 5910 98 24 12 chr21 3485610 3486648 -31420922 + L1PA10 LINE L1 5116 6149 -19 189 0 0 0 chr21 3486648 3486669 -31420901 + (TTAAA)n Simple_repeat Simple_repeat 1 21 0 5910 98 24 12 chr21 3486669 3486687 -31420883 + L1PA10 LINE L1 6149 6165 -3 409 289 7 22 chr21 3486938 3487073 -31420497 - MLT1L LTR MaLR -362 253 121 21 0 0 0 chr21 3487224 3487245 -31420325 + AT_rich Low_complexity Low_complexity 1 21 0 1613 187 53 34 chr21 3487316 3487674 -31419896 - MLT1A1 LTR MaLR 0 365 1 198 0 0 0 chr21 3487787 3487809 -31419761 + (A)n Simple_repeat Simple_repeat 1 22 0 2187 110 0 7 chr21 3489954 3490253 -31417317 - AluSq SINE Alu -16 297 1 217 224 102 0 chr21 3490560 3490609 -31416961 + MIR3 SINE MIR 120 173 -35 1556 187 29 0 chr21 3491742 3492020 -31415550 - AluJb SINE Alu -26 286 1 1293 205 7 15 chr21 3492637 3492910 -31414660 + AluJo SINE Alu 37 307 -5 2340 95 0 7 chr21 3493254 3493560 -31414010 + AluSq SINE Alu 1 304 -9 307 298 202 0 chr21 3494003 3494117 -31413453 - MER5A DNA MER1_type 0 189 53 289 245 10 69 chr21 3494735 3494837 -31412733 + MIR SINE MIR 40 135 -73 2226 93 24 0 chr21 3495546 3495835 -31411735 - AluSx SINE Alu -16 296 1 2506 54 0 0 chr21 3497076 3497374 -31410196 + AluY SINE Alu 10 307 -4 253 197 99 0 chr21 3497995 3498066 -31409504 - MIR3 SINE MIR -30 178 101 2147 85 3 30 chr21 3498242 3498592 -31408978 - AluY SINE Alu 0 342 1 8682 85 7 13 chr21 3498601 3500600 -31406970 - L1PA7 LINE L1 -3 6151 4143 333 264 118 0 chr21 3500789 3500899 -31406671 - L2 LINE L2 -4 3268 3146 213 383 111 21 chr21 3502186 3502421 -31405149 + L2 LINE L2 3017 3272 0 317 317 130 6 chr21 3502790 3502951 -31404619 + MIR SINE MIR 72 252 -10 1449 201 28 17 chr21 3503289 3503643 -31403927 + MLT1A1 LTR MaLR 1 358 -7 22 0 0 0 chr21 3504582 3504604 -31402966 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr21 3504638 3504659 -31402911 + AT_rich Low_complexity Low_complexity 1 21 0 2106 124 137 8 chr21 3505180 3505559 -31402011 - MSTA LTR MaLR 0 428 1 503 147 0 0 chr21 3505713 3505788 -31401782 + AluY SINE Alu 204 278 -33 212 395 18 9 chr21 3506124 3506238 -31401332 - L2 LINE L2 -553 2761 2647 388 291 81 35 chr21 3506245 3506417 -31401153 + L3 LINE CR1 351 530 -1047 383 273 145 15 chr21 3506902 3507081 -31400489 + MIR SINE MIR 34 236 -26 670 300 48 0 chr21 3507674 3507947 -31399623 + LTR33 LTR ERVL 1 286 -235 24 0 0 0 chr21 3508254 3508278 -31399292 + AT_rich Low_complexity Low_complexity 1 24 0 2212 70 31 0 chr21 3510463 3510474 -31397096 - AluY SINE Alu -15 296 287 477 0 0 0 chr21 3510474 3510527 -31397043 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 2212 70 31 0 chr21 3510527 3510802 -31396768 - AluY SINE Alu -24 287 1 808 173 8 17 chr21 3511271 3511601 -31395969 - MSTD LTR MaLR 0 396 1 1932 138 14 3 chr21 3512342 3512639 -31394931 + AluSx SINE Alu 2 301 -11 1815 170 3 20 chr21 3512801 3513107 -31394463 + AluJb SINE Alu 1 301 -11 375 267 40 48 chr21 3514351 3514624 -31392946 + L1MC5 LINE L1 7507 7777 -184 275 318 9 0 chr21 3514645 3514755 -31392815 + L1MC4 LINE L1 7926 8036 -6 400 302 90 28 chr21 3515058 3515270 -31392300 + MIR SINE MIR 17 241 -21 38 51 0 0 chr21 3516662 3516721 -31390849 + AT_rich Low_complexity Low_complexity 1 59 0 200 271 8 127 chr21 3517500 3517618 -31389952 - MIR3 SINE MIR -8 200 97 229 347 91 50 chr21 3517843 3517964 -31389606 - L2 LINE L2 -28 3244 3119 285 171 61 0 chr21 3518802 3518884 -31388686 + (TA)n Simple_repeat Simple_repeat 1 87 0 340 321 29 21 chr21 3518958 3519098 -31388472 + L1MC/D LINE L1 5682 5822 -1986 357 185 49 25 chr21 3519115 3519196 -31388374 + MIR SINE MIR 180 262 0 1771 160 12 91 chr21 3519342 3519761 -31387809 - MLT1B LTR MaLR -2 388 3 2538 44 0 3 chr21 3519884 3520180 -31387390 + AluY SINE Alu 2 296 -15 282 267 30 104 chr21 3521887 3522022 -31385548 - MIR3 SINE MIR -81 127 3 1639 227 6 6 chr21 3523317 3523670 -31383900 + MLT1A1 LTR MaLR 1 353 -12 1381 207 92 45 chr21 3524631 3525075 -31382495 + MLT1C LTR MaLR 3 467 0 724 291 17 34 chr21 3525440 3525674 -31381896 - MIR SINE MIR -8 254 25 327 345 72 29 chr21 3526773 3526912 -31380658 + L2 LINE L2 3127 3271 -1 25 75 0 0 chr21 3529899 3529952 -31377618 + AT_rich Low_complexity Low_complexity 1 53 0 219 364 0 0 chr21 3530696 3530773 -31376797 + CT-rich Low_complexity Low_complexity 3 79 0 1955 101 0 22 chr21 3530941 3531217 -31376353 + AluSq SINE Alu 43 312 -1 369 312 65 47 chr21 3531369 3531584 -31375986 - L2 LINE L2 -411 2903 2685 248 305 53 42 chr21 3531675 3531770 -31375800 - L2 LINE L2 0 3272 3177 911 51 0 0 chr21 3533380 3533498 -31374072 - L1PA5 LINE L1 0 6154 6037 672 43 21 0 chr21 3533498 3533591 -31373979 + L1PA6 LINE L1 5847 5941 -213 240 205 72 60 chr21 3533744 3533827 -31373743 + MIR SINE MIR 98 181 -81 293 260 76 32 chr21 3534645 3534799 -31372771 + L1MC5 LINE L1 7629 7775 -186 192 97 0 0 chr21 3534799 3534830 -31372740 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 293 260 76 32 chr21 3534830 3534854 -31372716 + L1MC5 LINE L1 7775 7797 -164 1446 215 0 17 chr21 3534854 3535147 -31372423 - AluJb SINE Alu -23 289 2 293 260 76 32 chr21 3535147 3535244 -31372326 + L1MC5 LINE L1 7797 7917 -44 4187 128 87 27 chr21 3535320 3536877 -31370693 - pTR5 LTR ERV1 0 2451 1520 2479 73 3 10 chr21 3537152 3537466 -31370104 + AluSx SINE Alu 1 312 0 318 87 0 0 chr21 3538453 3538499 -31369071 + (TG)n Simple_repeat Simple_repeat 1 46 0 180 0 0 0 chr21 3538498 3538518 -31369052 + (GA)n Simple_repeat Simple_repeat 1 20 0 245 221 73 0 chr21 3540604 3540672 -31366898 + MIR SINE MIR 84 156 -106 251 342 66 37 chr21 3541311 3541691 -31365879 + L2 LINE L2 2140 2530 -784 1804 170 38 39 chr21 3542251 3542797 -31364773 - MLT2A2 LTR ERVL 0 554 6 2293 108 0 10 chr21 3543330 3543636 -31363934 - AluSq SINE Alu -10 303 1 21 36 0 0 chr21 3543637 3543665 -31363905 + AT_rich Low_complexity Low_complexity 1 28 0 354 141 31 16 chr21 3544455 3544519 -31363051 + MER5A DNA MER1_type 125 189 0 391 237 59 8 chr21 3544871 3544989 -31362581 - MLT1J1 LTR MaLR -257 189 66 1858 132 22 39 chr21 3545104 3545415 -31362155 - AluSq SINE Alu -7 306 1 386 290 23 62 chr21 3545854 3546030 -31361540 - Charlie8 DNA MER1_type -2143 274 106 387 0 0 0 chr21 3546143 3546186 -31361384 + (TG)n Simple_repeat Simple_repeat 2 44 0 1791 166 0 18 chr21 3546186 3546470 -31361100 - AluJo SINE Alu -28 284 6 2202 92 0 0 chr21 3546640 3546947 -31360623 - AluSg SINE Alu 0 307 1 22 0 0 0 chr21 3547150 3547172 -31360398 + AT_rich Low_complexity Low_complexity 1 22 0 2272 98 3 0 chr21 3547637 3547933 -31359637 - AluSq SINE Alu -16 297 1 203 96 58 19 chr21 3548027 3548079 -31359491 + T-rich Low_complexity Low_complexity 2 55 0 1865 166 3 10 chr21 3548201 3548514 -31359056 - AluJb SINE Alu 0 312 2 212 216 27 27 chr21 3548609 3548683 -31358887 + CT-rich Low_complexity Low_complexity 2 75 0 351 272 114 75 chr21 3548789 3549123 -31358447 - HAL1 LINE L1 -1344 1163 817 1324 112 79 9 chr21 3549271 3549486 -31358084 - MER30 DNA MER1_type 0 230 1 449 301 35 22 chr21 3549654 3549880 -31357690 + LTR33A LTR ERVL 295 523 0 23 92 0 0 chr21 3550260 3550325 -31357245 + AT_rich Low_complexity Low_complexity 1 65 0 269 253 40 0 chr21 3551454 3551529 -31356041 + MLT1K LTR MaLR 511 588 0 2704 131 23 5 chr21 3551885 3552327 -31355243 + L1PA15 LINE L1 5709 6158 -7 839 131 81 45 chr21 3552775 3552973 -31354597 + THE1C LTR MaLR 83 287 -88 240 59 0 0 chr21 3553018 3553052 -31354518 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 802 238 44 67 chr21 3553371 3553392 -31354178 - MER39 LTR ERV1 -49 636 616 1449 117 101 79 chr21 3553392 3553759 -31353811 + THE1C LTR MaLR 1 375 0 802 238 44 67 chr21 3553759 3554122 -31353448 - MER39 LTR ERV1 -69 616 243 774 50 0 0 chr21 3554326 3554426 -31353144 - L1PA5 LINE L1 -6 6148 6049 266 79 0 0 chr21 3554426 3554464 -31353106 + L1P2 LINE L1 5698 5735 -419 1256 153 5 0 chr21 3554957 3555153 -31352417 - AluSg/x SINE Alu -1 309 113 591 267 116 27 chr21 3555888 3556034 -31351536 - MIR SINE MIR 0 262 88 1748 112 0 0 chr21 3556034 3556275 -31351295 + AluSq SINE Alu 1 241 -72 591 267 116 27 chr21 3556275 3556353 -31351217 - MIR SINE MIR -174 88 18 2383 159 26 14 chr21 3556896 3557317 -31350253 + MSTB LTR MaLR 1 426 0 369 0 0 0 chr21 3557489 3557530 -31350040 + (TA)n Simple_repeat Simple_repeat 2 42 0 1013 164 94 101 chr21 3557530 3557816 -31349754 - AluJo SINE Alu -18 284 1 497 250 88 7 chr21 3560948 3561096 -31346474 - MIR SINE MIR -55 207 48 826 244 49 10 chr21 3562766 3562971 -31344599 + MIR SINE MIR 40 252 -10 195 100 0 0 chr21 3563146 3563176 -31344394 + (TC)n Simple_repeat Simple_repeat 1 30 0 206 301 72 12 chr21 3563354 3563437 -31344133 + MER5A DNA MER1_type 91 178 -11 787 202 92 52 chr21 3564372 3564804 -31342766 - MLT1D LTR MaLR 0 505 5 306 0 0 0 chr21 3565695 3565729 -31341841 + (TA)n Simple_repeat Simple_repeat 2 35 0 2241 99 0 7 chr21 3565729 3566032 -31341538 - AluY SINE Alu -10 301 1 1370 185 83 23 chr21 3566101 3566366 -31341204 - AluJo SINE Alu -31 281 1 24 0 0 0 chr21 3567039 3567063 -31340507 + AT_rich Low_complexity Low_complexity 1 24 0 216 188 125 0 chr21 3567981 3568029 -31339541 + L2 LINE L2 3248 3301 -12 270 357 108 46 chr21 3569825 3570130 -31337440 - L2 LINE L2 -59 3213 2890 3118 108 20 0 chr21 3570738 3571182 -31336388 - MLT2A2 LTR ERVL 0 453 1 890 169 33 26 chr21 3571243 3571463 -31336107 + MLT1D LTR MaLR 22 239 -266 702 232 7 0 chr21 3571514 3571669 -31335901 + MLT1D LTR MaLR 337 492 -13 22 35 0 0 chr21 3572843 3572872 -31334698 + AT_rich Low_complexity Low_complexity 1 29 0 181 235 0 0 chr21 3572985 3573019 -31334551 - MIR SINE MIR -88 120 87 2281 106 0 3 chr21 3573271 3573572 -31333998 + AluSg SINE Alu 1 300 -10 206 64 0 85 chr21 3574712 3574759 -31332811 + (TTATA)n Simple_repeat Simple_repeat 3 45 0 22 0 0 0 chr21 3575366 3575388 -31332182 + AT_rich Low_complexity Low_complexity 1 22 0 649 327 15 21 chr21 3575771 3576016 -31331554 + MIR SINE MIR 15 262 0 270 160 0 0 chr21 3576041 3576091 -31331479 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 459 317 25 25 chr21 3577412 3577611 -31329959 - MIR SINE MIR -62 200 2 1009 220 9 22 chr21 3578372 3578599 -31328971 - MER58A DNA MER1_type 0 224 1 10536 31 0 0 chr21 3579160 3581184 -31326386 - L1PA3 LINE L1 -3 6152 4129 892 260 86 8 chr21 3582430 3582791 -31324779 - Charlie4a DNA MER1_type -1 507 119 1148 170 0 28 chr21 3583378 3583590 -31323980 + MER3 DNA MER1_type 4 209 0 2593 47 0 0 chr21 3584826 3585127 -31322443 + AluY SINE Alu 1 301 -10 686 262 52 22 chr21 3586053 3586282 -31321288 - MIR SINE MIR -22 240 5 1100 224 33 76 chr21 3586426 3586586 -31320984 + MLT1B LTR MaLR 15 180 -210 2210 128 0 0 chr21 3586586 3586891 -31320679 + AluSx SINE Alu 1 305 -7 1100 224 33 76 chr21 3586891 3587123 -31320447 + MLT1B LTR MaLR 180 390 0 261 139 0 0 chr21 3587659 3587702 -31319868 + (TTCTCC)n Simple_repeat Simple_repeat 6 48 0 1244 189 0 5 chr21 3587704 3587921 -31319649 - AluJo SINE Alu -4 308 93 1882 148 3 26 chr21 3588319 3588630 -31318940 + AluSx SINE Alu 1 304 -8 2500 112 0 6 chr21 3588863 3589220 -31318350 + THE1A LTR MaLR 1 355 0 2077 127 0 0 chr21 3589752 3590082 -31317488 - AluSx SINE Alu 0 330 1 331 320 24 32 chr21 3591289 3591414 -31316156 - MER5A DNA MER1_type -2 187 64 24 0 0 0 chr21 3594810 3594834 -31312736 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 3596681 3596702 -31310868 + AT_rich Low_complexity Low_complexity 1 21 0 769 161 0 8 chr21 3596702 3596820 -31310750 - AluJo SINE Alu -184 118 2 21 0 0 0 chr21 3597061 3597082 -31310488 + AT_rich Low_complexity Low_complexity 1 21 0 215 372 0 0 chr21 3597498 3597576 -31309994 + L2 LINE L2 3196 3273 -40 301 211 88 147 chr21 3597764 3597968 -31309602 - HAL1 LINE L1 -34 2473 2282 262 284 48 34 chr21 3597991 3598199 -31309371 - HAL1 LINE L1 -343 2164 1954 1063 306 56 25 chr21 3598297 3598631 -31308939 - HAL1 LINE L1 -622 1885 1534 1558 199 42 9 chr21 3598631 3598963 -31308607 - MER61A LTR ERV1 0 343 1 1063 306 56 25 chr21 3598963 3599059 -31308511 - HAL1 LINE L1 -973 1534 1442 238 257 50 10 chr21 3599172 3599273 -31308297 - HAL1 LINE L1 -1256 1251 1147 470 316 37 28 chr21 3599278 3599493 -31308077 - HAL1 LINE L1 -1416 1091 875 232 312 133 23 chr21 3599687 3599815 -31307755 - HAL1 LINE L1 -1867 640 499 22 80 0 0 chr21 3600166 3600216 -31307354 + AT_rich Low_complexity Low_complexity 1 50 0 204 245 0 0 chr21 3601200 3601249 -31306321 + A-rich Low_complexity Low_complexity 1 49 0 2302 132 25 6 chr21 3602098 3602455 -31305115 - THE1B LTR MaLR 0 364 1 1842 137 3 34 chr21 3602517 3602852 -31304718 - AluSx SINE Alu 0 326 1 25 75 0 0 chr21 3603754 3603807 -31303763 + AT_rich Low_complexity Low_complexity 1 53 0 1432 210 45 18 chr21 3604498 3604784 -31302786 - AluJo SINE Alu -18 294 1 2106 174 142 9 chr21 3606020 3606479 -31301091 + MLT2B1 LTR ERVL 1 520 0 6968 160 55 46 chr21 3606915 3608552 -31299018 - MER52A LTR ERV1 0 1755 1 419 301 25 25 chr21 3609393 3609589 -31297981 - LTR16A1 LTR ERVL -91 366 171 325 159 0 0 chr21 3613081 3613150 -31294420 - L1MA10 LINE L1 -2 6332 6264 903 230 38 83 chr21 3613153 3613385 -31294185 - L1MEc LINE L1 -5173 1223 1021 3331 142 9 15 chr21 3613385 3613915 -31293655 - MER1A DNA MER1_type 0 527 1 903 230 38 83 chr21 3613915 3614151 -31293419 - L1MEc LINE L1 -5375 1021 776 244 143 18 0 chr21 3614151 3614207 -31293363 - LTR66 LTR ERVL -382 228 172 217 200 40 0 chr21 3614207 3614257 -31293313 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 769 233 88 16 chr21 3614286 3614479 -31293091 - MIR SINE MIR -9 253 47 1425 265 63 25 chr21 3614482 3614991 -31292579 - L1MEc LINE L1 -5636 760 233 524 114 0 48 chr21 3615153 3615258 -31292312 + (TG)n Simple_repeat Simple_repeat 1 100 0 2167 102 0 3 chr21 3616361 3616714 -31290856 + AluSp SINE Alu 1 352 0 216 300 17 0 chr21 3617069 3617129 -31290441 + L2 LINE L2 3205 3265 -7 22 94 0 0 chr21 3617295 3617359 -31290211 + AT_rich Low_complexity Low_complexity 1 64 0 357 24 0 0 chr21 3617593 3617635 -31289935 + (CA)n Simple_repeat Simple_repeat 1 42 0 2116 131 35 71 chr21 3618692 3619058 -31288512 - LTR18A LTR ERVL -1 356 4 785 207 57 10 chr21 3619276 3619469 -31288101 - MIR SINE MIR -54 208 7 271 0 0 49 chr21 3620365 3620406 -31287164 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2435 179 26 13 chr21 3622583 3623119 -31284451 - L1MC2 LINE L1 -1 6343 5801 755 211 11 17 chr21 3623197 3623372 -31284198 + L1PB3 LINE L1 5969 6142 -12 2098 137 0 10 chr21 3625386 3625873 -31281697 + AluSx SINE Alu 3 312 0 277 272 70 35 chr21 3627651 3627765 -31279805 + MIR SINE MIR 33 150 -58 1526 207 42 6 chr21 3628771 3629124 -31278446 + MER47A DNA MER2_type 1 366 0 24 32 0 0 chr21 3629733 3629764 -31277806 + AT_rich Low_complexity Low_complexity 1 31 0 1748 162 60 30 chr21 3629809 3630173 -31277397 + THE1C LTR MaLR 1 375 0 1122 249 55 35 chr21 3631265 3631663 -31275907 - MLT1I LTR MaLR -1 408 3 1410 210 31 12 chr21 3631880 3632101 -31275469 - MER58B DNA MER1_type -2079 341 126 2381 96 0 3 chr21 3632101 3632413 -31275157 - AluY SINE Alu 0 311 1 1410 210 31 12 chr21 3632413 3632445 -31275125 - MER58B DNA MER1_type -2294 126 96 2326 108 0 0 chr21 3632445 3632740 -31274830 + AluSg SINE Alu 1 295 -15 1410 210 31 12 chr21 3632740 3632809 -31274761 - MER58B DNA MER1_type -2324 96 12 2177 92 0 10 chr21 3633766 3634060 -31273510 + AluSc SINE Alu 1 291 -18 2532 65 0 0 chr21 3634445 3634769 -31272801 - L1PA6 LINE L1 0 6154 5831 2320 106 39 25 chr21 3634788 3635147 -31272423 + THE1B LTR MaLR 1 364 0 1101 203 59 24 chr21 3635806 3635870 -31271700 - Charlie1 DNA MER1_type -4 2757 2697 586 212 50 11 chr21 3635870 3636049 -31271521 - MER53 DNA DNA 0 189 4 1101 203 59 24 chr21 3636049 3636452 -31271118 - Charlie1 DNA MER1_type -64 2697 2264 2070 130 9 22 chr21 3636467 3636783 -31270787 - AluSx SINE Alu 0 312 1 519 250 7 7 chr21 3636784 3636928 -31270642 - Charlie1 DNA MER1_type -481 2280 2137 2833 221 79 41 chr21 3636925 3637826 -31269744 - Charlie1a DNA MER1_type -519 936 2 5149 174 28 14 chr21 3638628 3639914 -31267656 - L1MA5 LINE L1 0 6300 4992 318 296 74 42 chr21 3639927 3640116 -31267454 + L2 LINE L2 3112 3306 -7 1548 196 11 21 chr21 3640116 3640401 -31267169 + AluJo SINE Alu 1 282 -30 210 37 0 0 chr21 3643502 3643529 -31264041 + (TAAAAA)n Simple_repeat Simple_repeat 2 28 0 292 219 16 0 chr21 3643789 3643853 -31263717 + MER52A LTR ERV1 1 65 -1690 4050 207 49 15 chr21 3644446 3645984 -31261586 + MER52A LTR ERV1 379 1755 0 23 0 0 0 chr21 3646137 3646160 -31261410 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr21 3647427 3647456 -31260114 + AT_rich Low_complexity Low_complexity 1 29 0 29 47 0 0 chr21 3648568 3648611 -31258959 + AT_rich Low_complexity Low_complexity 1 43 0 342 286 22 11 chr21 3648982 3649073 -31258497 + MER5A DNA MER1_type 11 102 -87 205 267 0 0 chr21 3649527 3649572 -31257998 + (TG)n Simple_repeat Simple_repeat 2 46 0 273 233 11 22 chr21 3649662 3649752 -31257818 - L1MC5 LINE L1 -44 7917 7829 310 237 0 0 chr21 3649929 3650005 -31257565 - L1ME2 LINE L1 -20 6144 6069 1249 222 109 35 chr21 3650026 3650485 -31257085 + L1ME2 LINE L1 5523 6015 -149 13667 161 27 4 chr21 3650493 3653316 -31254254 - L1PA12 LINE L1 -4004 3580 425 1122 263 13 19 chr21 3653580 3653956 -31253614 + L1M4 LINE L1 4048 4421 -1725 1577 213 58 3 chr21 3653980 3654116 -31253454 - L1PB4 LINE L1 -11 6145 5764 1058 164 26 0 chr21 3654147 3654342 -31253228 - L1PB4 LINE L1 -193 5963 5764 3364 224 23 17 chr21 3654345 3655274 -31252296 + L1M4 LINE L1 4415 5348 -798 1072 207 30 33 chr21 3655302 3655572 -31251998 + L1M4 LINE L1 5399 5667 -507 2603 61 0 0 chr21 3655578 3655889 -31251681 + AluY SINE Alu 1 311 0 4428 142 29 0 chr21 3655894 3656657 -31250913 + L1MA8 LINE L1 5500 6284 -7 21 57 0 0 chr21 3657131 3657166 -31250404 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr21 3657363 3657384 -31250186 + (A)n Simple_repeat Simple_repeat 1 21 0 1837 127 61 71 chr21 3658288 3658667 -31248903 + THE1C LTR MaLR 1 375 0 186 43 0 0 chr21 3658717 3658740 -31248830 + (T)n Simple_repeat Simple_repeat 1 23 0 213 344 10 31 chr21 3659051 3659147 -31248423 + L2 LINE L2 3137 3230 -42 215 296 204 0 chr21 3661450 3661538 -31246032 - L2 LINE L2 0 3313 3208 2183 114 0 3 chr21 3663487 3663785 -31243785 - AluSq SINE Alu -16 297 1 706 311 60 38 chr21 3664446 3664813 -31242757 - L2 LINE L2 -2 3311 2937 1705 262 18 7 chr21 3664813 3665367 -31242203 + L1 LINE L1 2700 3259 -2887 8543 177 27 44 chr21 3665525 3667694 -31239876 + L1PA16 LINE L1 3303 5509 -657 2309 104 0 3 chr21 3667694 3668001 -31239569 + AluSg SINE Alu 1 306 -4 8543 177 27 44 chr21 3668001 3668139 -31239431 + L1PA16 LINE L1 5509 5648 -518 2025 135 10 3 chr21 3668139 3668436 -31239134 + AluSx SINE Alu 1 299 -13 8543 177 27 44 chr21 3668436 3668836 -31238734 + L1PA16 LINE L1 5648 5956 -210 2211 130 0 0 chr21 3668836 3669144 -31238426 + AluSx SINE Alu 1 308 -4 8543 177 27 44 chr21 3669144 3669343 -31238227 + L1PA16 LINE L1 5956 6157 -9 185 279 0 23 chr21 3669366 3669409 -31238161 - L2 LINE L2 -364 2950 2909 348 308 43 0 chr21 3669759 3669876 -31237694 - LTR33 LTR ERVL -399 122 1 729 301 50 45 chr21 3669876 3670600 -31236970 - L2 LINE L2 -402 2912 2046 1007 189 6 8 chr21 3671123 3671337 -31236233 + MLT1D LTR MaLR 4 178 -327 307 221 89 132 chr21 3671394 3671584 -31235986 + MLT1D LTR MaLR 286 467 0 1112 173 64 54 chr21 3674508 3674803 -31232767 + MER33 DNA MER1_type 13 310 -14 180 0 0 0 chr21 3675066 3675086 -31232484 + (CA)n Simple_repeat Simple_repeat 2 21 0 373 256 23 0 chr21 3676314 3676400 -31231170 - MER5A DNA MER1_type -93 96 9 448 16 0 0 chr21 3678237 3678298 -31229272 - AluY SINE Alu -2 308 248 2116 213 77 5 chr21 3680880 3681057 -31226513 - L1ME1 LINE L1 -8 6158 5995 1960 164 0 0 chr21 3681057 3681368 -31226202 - AluSx SINE Alu -1 311 1 2116 213 77 5 chr21 3681368 3682234 -31225336 - L1ME1 LINE L1 -171 5995 5030 751 278 39 7 chr21 3682241 3682525 -31225045 - L1ME1 LINE L1 -3148 2998 2706 1085 158 0 0 chr21 3682620 3682791 -31224779 - Tigger4(Zombi) DNA MER2_type -1 2730 2560 3087 146 25 31 chr21 3683624 3684174 -31223396 - LTR10A LTR ERV1 -62 547 1 549 111 89 0 chr21 3684799 3684889 -31222681 + MER4A LTR ERV1 1 98 -566 1735 134 0 90 chr21 3684942 3685263 -31222307 + MER4A LTR ERV1 373 664 0 204 125 0 0 chr21 3685435 3685467 -31222103 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr21 3685790 3685818 -31221752 + AT_rich Low_complexity Low_complexity 1 28 0 1476 202 6 22 chr21 3685942 3686259 -31221311 - AluJo SINE Alu 0 312 1 1568 206 18 26 chr21 3686698 3687047 -31220523 - L1MB8 LINE L1 0 6178 5831 216 0 0 0 chr21 3687047 3687071 -31220499 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1568 206 18 26 chr21 3687071 3687104 -31220466 - L1MB8 LINE L1 -347 5831 5799 1341 179 14 21 chr21 3687112 3687397 -31220173 - L1MB8 LINE L1 -356 5828 5546 21 57 0 0 chr21 3687760 3687795 -31219775 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr21 3688953 3688975 -31218595 + AT_rich Low_complexity Low_complexity 1 22 0 716 261 6 6 chr21 3689294 3689459 -31218111 + MER5A DNA MER1_type 1 165 -24 180 311 66 60 chr21 3689480 3689647 -31217923 - MER5A DNA MER1_type 0 189 22 484 267 81 37 chr21 3689661 3689822 -31217748 + MER5B DNA MER1_type 8 175 -3 211 336 100 36 chr21 3690581 3690801 -31216769 + L2 LINE L2 2549 2782 -532 306 340 23 2 chr21 3692373 3692483 -31215087 - MIR SINE MIR -65 143 25 2537 62 0 3 chr21 3692483 3692791 -31214779 - AluY SINE Alu -4 307 1 306 340 23 2 chr21 3692791 3692803 -31214767 - MIR SINE MIR -183 25 15 442 279 66 11 chr21 3692999 3693182 -31214388 - MLT1I LTR MaLR -137 272 80 370 136 0 0 chr21 3693192 3693251 -31214319 + LTR1B LTR ERV1 1 59 -767 2232 157 47 19 chr21 3693341 3694048 -31213522 + LTR1B LTR ERV1 61 826 0 1883 281 94 29 chr21 3695646 3696371 -31211199 - L2 LINE L2 -436 2878 2107 1066 314 50 13 chr21 3696788 3697244 -31210326 + L2 LINE L2 1937 2409 -905 416 318 71 12 chr21 3697527 3697697 -31209873 - MIR3 SINE MIR -9 199 20 4246 163 81 4 chr21 3698436 3699201 -31208369 + LTR1B LTR ERV1 3 826 0 514 329 52 26 chr21 3699496 3699727 -31207843 + MIR SINE MIR 16 252 -10 1412 234 119 30 chr21 3699889 3700351 -31207219 - MLT1D LTR MaLR -2 503 1 2372 100 6 0 chr21 3702571 3702882 -31204688 + AluSq SINE Alu 1 313 0 675 318 80 3 chr21 3703379 3703665 -31203905 + L3 LINE CR1 1178 1485 -92 850 354 19 11 chr21 3703789 3704151 -31203419 + L1MEc LINE L1 32 396 -6000 1544 193 86 82 chr21 3704416 3704976 -31202594 + LTR1B LTR ERV1 265 826 0 1955 151 10 62 chr21 3704977 3705393 -31202177 + L1MA7 LINE L1 5617 6010 -281 783 196 0 21 chr21 3705567 3705710 -31201860 + FRAM SINE Alu 19 158 -18 307 243 0 87 chr21 3705840 3706025 -31201545 + (ATATG)n Simple_repeat Simple_repeat 5 173 0 222 272 0 84 chr21 3706183 3706374 -31201196 + (ATATG)n Simple_repeat Simple_repeat 5 179 0 474 306 60 8 chr21 3706421 3706804 -31200766 + L1MEc LINE L1 1278 1680 -4716 1008 234 46 54 chr21 3706801 3707305 -31200265 + L1MEc LINE L1 2945 3444 -2771 622 273 33 0 chr21 3707290 3707473 -31200097 + L1MEc LINE L1 1678 1866 -4530 253 254 77 43 chr21 3707519 3707634 -31199936 + L1MEc LINE L1 4545 4672 -1543 1845 144 17 45 chr21 3707634 3707988 -31199582 - MER2 DNA MER2_type 0 344 1 253 254 77 43 chr21 3707988 3708081 -31199489 + L1MEc LINE L1 4672 4760 -1455 271 296 30 7 chr21 3708234 3708369 -31199201 + L1P LINE L1 4878 5015 -1131 4949 132 25 25 chr21 3708534 3708915 -31198655 - L1PA16 LINE L1 -21 6145 5766 2334 143 23 10 chr21 3708915 3709313 -31198257 + MER57A LTR ERV1 1 403 0 4949 132 25 25 chr21 3709313 3709741 -31197829 - L1PA16 LINE L1 -400 5766 5329 2347 107 0 0 chr21 3709741 3710039 -31197531 - AluSx SINE Alu -14 298 1 4949 132 25 25 chr21 3710039 3710240 -31197330 - L1PA16 LINE L1 -837 5329 5130 1243 177 0 5 chr21 3710242 3710440 -31197130 - AluJb SINE Alu -17 295 99 1168 266 0 0 chr21 3710440 3710763 -31196807 - L1PA16 LINE L1 -1034 5112 4790 2454 211 8 5 chr21 3710756 3711362 -31196208 - L1 LINE L1 -1428 4718 4111 258 103 0 0 chr21 3711633 3711672 -31195898 + L1PA16 LINE L1 5925 5963 -203 593 184 54 20 chr21 3711674 3711821 -31195749 + L1PA16 LINE L1 6015 6166 0 26 30 0 0 chr21 3712445 3712478 -31195092 + AT_rich Low_complexity Low_complexity 1 33 0 231 358 32 25 chr21 3712732 3713257 -31194313 + L1MC/D LINE L1 4490 5018 -1128 1256 236 49 20 chr21 3713551 3713941 -31193629 + L1MC/D LINE L1 5363 5763 -2045 2320 145 40 42 chr21 3715048 3715475 -31192095 + MSTB LTR MaLR 1 426 0 486 282 130 99 chr21 3715499 3715608 -31191962 + L2 LINE L2 2804 2908 -405 1902 162 0 0 chr21 3715608 3715920 -31191650 + AluSx SINE Alu 1 312 0 486 282 130 99 chr21 3715920 3716141 -31191429 + L2 LINE L2 2908 3158 -155 1395 213 66 20 chr21 3716141 3716488 -31191082 - MLT1A1 LTR MaLR 0 365 3 486 282 130 99 chr21 3716488 3716647 -31190923 + L2 LINE L2 3158 3311 -2 1819 213 102 28 chr21 3716684 3717154 -31190416 + MLT1D LTR MaLR 1 505 0 297 0 0 0 chr21 3717245 3717278 -31190292 + (TC)n Simple_repeat Simple_repeat 2 34 0 186 43 0 0 chr21 3717277 3717300 -31190270 + (TG)n Simple_repeat Simple_repeat 2 24 0 690 170 0 0 chr21 3717317 3717464 -31190106 + GA-rich Low_complexity Low_complexity 2 148 0 1849 179 3 25 chr21 3717472 3717836 -31189734 - MLT2D LTR ERVL -56 358 3 464 203 8 45 chr21 3718337 3718470 -31189100 + MLT1K LTR MaLR 447 574 -14 694 271 76 46 chr21 3720694 3720996 -31186574 - MLT1J LTR MaLR -159 352 42 2734 13 0 0 chr21 3721628 3721931 -31185639 - AluY SINE Alu -8 303 1 24 67 0 0 chr21 3722076 3722121 -31185449 + AT_rich Low_complexity Low_complexity 1 45 0 2272 98 0 9 chr21 3722231 3722547 -31185023 - AluSq SINE Alu 0 313 1 369 295 36 0 chr21 3722574 3722686 -31184884 - MIR SINE MIR -37 225 110 23 33 0 0 chr21 3723767 3723797 -31183773 + AT_rich Low_complexity Low_complexity 1 30 0 541 309 76 14 chr21 3723895 3724118 -31183452 + L2 LINE L2 2297 2533 -781 193 374 53 48 chr21 3724227 3724414 -31183156 + L2 LINE L2 2670 2857 -457 1617 174 110 62 chr21 3725743 3726181 -31181389 + MLT1C LTR MaLR 1 459 -8 29 18 0 55 chr21 3728238 3728293 -31179277 + AT_rich Low_complexity Low_complexity 1 52 0 673 274 67 18 chr21 3728657 3728880 -31178690 + MIR SINE MIR 1 234 -28 565 280 85 10 chr21 3728922 3729122 -31178448 + MIR SINE MIR 14 228 -34 2490 117 11 16 chr21 3729573 3729950 -31177620 + THE1C LTR MaLR 1 375 0 243 0 0 0 chr21 3729996 3730023 -31177547 + (TG)n Simple_repeat Simple_repeat 2 28 0 2085 136 0 3 chr21 3731073 3731375 -31176195 - AluJb SINE Alu -1 311 11 3822 185 14 1 chr21 3731450 3732190 -31175380 + L1MB4 LINE L1 5430 6178 -2 380 276 119 23 chr21 3732537 3732934 -31174636 - L1MC/D LINE L1 -312 5809 5373 22 0 0 0 chr21 3736299 3736321 -31171249 + AT_rich Low_complexity Low_complexity 1 22 0 272 343 80 34 chr21 3736385 3736560 -31171010 - L3 LINE CR1 -100 1477 1295 436 292 82 10 chr21 3739887 3740082 -31167488 - MIR SINE MIR -14 248 40 299 354 34 6 chr21 3740682 3740860 -31166710 + HAL1 LINE L1 257 439 -2068 1668 268 86 55 chr21 3741309 3742521 -31165049 + HAL1 LINE L1 1115 2364 -143 288 305 0 19 chr21 3742650 3742755 -31164815 + A-rich Low_complexity Low_complexity 1 103 0 3012 180 92 44 chr21 3743020 3743771 -31163799 + LTR48 LTR ERV1 1 787 0 3264 184 36 55 chr21 3744940 3745710 -31161860 - L1MB8 LINE L1 0 6178 5431 2200 114 0 17 chr21 3745710 3746007 -31161563 - AluSx SINE Alu -20 292 1 3264 184 36 55 chr21 3746007 3746322 -31161248 - L1MB8 LINE L1 -747 5431 5112 374 358 40 10 chr21 3746526 3746727 -31160843 - MIR SINE MIR -31 231 25 2372 169 15 0 chr21 3749411 3749818 -31157752 - MSTB LTR MaLR -13 413 1 263 356 11 0 chr21 3749819 3749906 -31157664 - MIR SINE MIR -56 152 65 293 140 18 0 chr21 3750758 3750815 -31156755 + (CAA)n Simple_repeat Simple_repeat 3 60 0 1518 200 112 13 chr21 3751799 3752451 -31155119 - LTR48 LTR ERV1 -45 742 11 218 191 0 24 chr21 3752561 3752603 -31154967 + L3 LINE CR1 1535 1575 -2 183 211 35 88 chr21 3752752 3752809 -31154761 - L2 LINE L2 -81 3232 3179 222 37 0 0 chr21 3753232 3753259 -31154311 + (T)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr21 3754503 3754526 -31153044 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 3755395 3755416 -31152154 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 3756350 3756374 -31151196 + AT_rich Low_complexity Low_complexity 1 24 0 236 62 0 62 chr21 3756961 3757009 -31150561 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 213 311 92 8 chr21 3757369 3757488 -31150082 + L2 LINE L2 3178 3306 -7 2276 98 0 3 chr21 3760180 3760475 -31147095 + AluSq SINE Alu 1 294 -19 511 257 75 44 chr21 3764006 3764232 -31143338 - LTR33 LTR ERVL -158 363 131 356 186 0 0 chr21 3764439 3764498 -31143072 + MLT1B LTR MaLR 1 59 -408 888 211 0 6 chr21 3764499 3764679 -31142891 + MLT1B LTR MaLR 212 390 0 2223 109 7 0 chr21 3764845 3765148 -31142422 - AluSp SINE Alu -7 306 2 603 288 90 40 chr21 3765384 3765807 -31141763 - L1MDa LINE L1 -4790 1339 896 34 102 0 0 chr21 3765880 3765998 -31141572 + AT_rich Low_complexity Low_complexity 1 118 0 578 318 22 56 chr21 3766014 3766281 -31141289 - L1MDa LINE L1 -5292 827 570 4324 181 19 18 chr21 3766358 3766512 -31141058 - L1MB5 LINE L1 0 6174 6022 2571 118 5 3 chr21 3766512 3766886 -31140684 + THE1C LTR MaLR 1 375 0 4324 181 19 18 chr21 3766886 3767586 -31139984 - L1MB5 LINE L1 -152 6022 5319 22865 145 10 11 chr21 3767582 3772480 -31135090 - L1PA10 LINE L1 -1 6482 1590 2870 82 30 8 chr21 3772480 3772883 -31134687 + MLT2A1 LTR ERVL 3 480 -35 345 59 78 0 chr21 3772938 3772989 -31134581 + MLT2A2 LTR ERVL 399 453 0 4450 225 30 39 chr21 3772990 3774561 -31133009 - L1PA10 LINE L1 -4736 1139 3 3477 241 36 8 chr21 3774558 3775580 -31131990 - L1MB5 LINE L1 -820 5326 4276 189 0 0 0 chr21 3777049 3777070 -31130500 + (T)n Simple_repeat Simple_repeat 1 21 0 183 336 63 28 chr21 3777782 3777925 -31129645 + L2 LINE L2 2627 2774 -540 446 254 8 62 chr21 3779013 3779143 -31128427 + L2 LINE L2 3150 3272 0 10572 119 29 3 chr21 3780298 3782708 -31124862 + L1PA8 LINE L1 3721 6169 -3 990 190 60 154 chr21 3782721 3782820 -31124750 + MLT1A1 LTR MaLR 1 108 -257 2051 138 36 36 chr21 3782820 3783182 -31124388 + THE1B LTR MaLR 3 364 0 990 190 60 154 chr21 3783182 3783518 -31124052 + MLT1A1 LTR MaLR 108 364 -1 2658 162 16 2 chr21 3783737 3784179 -31123391 - MSTB2 LTR MaLR 0 457 1 80 11 0 0 chr21 3784234 3784321 -31123249 + AT_rich Low_complexity Low_complexity 1 87 0 241 230 184 0 chr21 3784978 3785065 -31122505 - MIR SINE MIR -11 251 149 845 199 11 6 chr21 3785849 3786030 -31121540 + MER53 DNA DNA 8 189 0 201 175 0 0 chr21 3786559 3786599 -31120971 + (CA)n Simple_repeat Simple_repeat 2 41 0 359 336 61 23 chr21 3786883 3787014 -31120556 + L2 LINE L2 3136 3271 -1 2243 121 10 0 chr21 3787729 3788035 -31119535 + AluSg SINE Alu 1 309 -1 351 0 0 0 chr21 3788520 3788559 -31119011 + (CA)n Simple_repeat Simple_repeat 2 40 0 189 0 0 0 chr21 3788558 3788579 -31118991 + (GA)n Simple_repeat Simple_repeat 2 22 0 351 0 0 0 chr21 3789387 3789426 -31118144 + (CA)n Simple_repeat Simple_repeat 2 40 0 188 204 82 20 chr21 3789677 3789726 -31117844 + L2 LINE L2 3220 3271 -1 563 234 118 46 chr21 3790218 3790595 -31116975 - MLT1D LTR MaLR -1 504 53 887 225 38 9 chr21 3790802 3791015 -31116555 - MER20 DNA MER1_type 0 219 1 24 32 0 0 chr21 3791119 3791150 -31116420 + AT_rich Low_complexity Low_complexity 1 31 0 2143 129 0 0 chr21 3791839 3792134 -31115436 + AluSx SINE Alu 1 295 -17 25 51 0 0 chr21 3792134 3792173 -31115397 + AT_rich Low_complexity Low_complexity 1 39 0 491 277 38 19 chr21 3792221 3792380 -31115190 + MARNA DNA Mariner 403 564 -22 716 279 158 0 chr21 3792538 3792760 -31114810 + MIR SINE MIR 3 259 -3 25 51 0 0 chr21 3793557 3793596 -31113974 + AT_rich Low_complexity Low_complexity 1 39 0 3230 230 26 33 chr21 3794307 3795191 -31112379 + L1ME1 LINE L1 5285 6162 -4 2190 126 29 27 chr21 3795448 3795822 -31111748 - THE1C LTR MaLR 0 375 1 390 271 0 58 chr21 3797338 3797493 -31110077 - MER117 DNA MER1_type -47 150 5 206 280 27 27 chr21 3797631 3797706 -31109864 - L2 LINE L2 -12 3260 3186 688 304 92 31 chr21 3797809 3798190 -31109380 + L2 LINE L2 2544 2947 -367 236 342 25 70 chr21 3798316 3798515 -31109055 + L2 LINE L2 3119 3308 -5 209 208 38 38 chr21 3798568 3798621 -31108949 - L2 LINE L2 -93 3220 3168 2188 109 0 0 chr21 3799116 3799410 -31108160 + AluSc SINE Alu 1 294 -15 22 0 0 0 chr21 3799849 3799871 -31107699 + AT_rich Low_complexity Low_complexity 1 22 0 458 252 58 0 chr21 3801699 3801802 -31105768 + MER81 DNA DNA 1 109 -5 23 0 0 0 chr21 3802430 3802453 -31105117 + AT_rich Low_complexity Low_complexity 1 23 0 2585 190 42 2 chr21 3802466 3802965 -31104605 + LTR53 LTR ERVL 1 519 0 555 252 0 0 chr21 3804311 3804470 -31103100 + (CA)n Simple_repeat Simple_repeat 2 160 0 344 368 0 31 chr21 3805966 3806129 -31101441 - MIR SINE MIR -60 202 45 888 223 164 53 chr21 3806131 3806626 -31100944 - MLT1E LTR MaLR -8 585 1 27 29 0 0 chr21 3806635 3806669 -31100901 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 3806941 3806969 -31100601 + AT_rich Low_complexity Low_complexity 1 28 0 278 0 54 0 chr21 3807030 3807067 -31100503 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 183 42 0 0 chr21 3807573 3807597 -31099973 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1933 222 36 53 chr21 3807732 3808255 -31099315 - MER77 LTR ERV1 -39 566 53 214 258 16 32 chr21 3809140 3809202 -31098368 - MER5A DNA MER1_type 0 189 129 256 304 39 49 chr21 3809197 3809299 -31098271 + MER5A DNA MER1_type 88 188 -1 455 307 21 0 chr21 3809578 3809718 -31097852 - MIR SINE MIR -11 251 109 275 266 0 0 chr21 3810001 3810065 -31097505 - MIR SINE MIR -12 250 187 1642 164 3 72 chr21 3810150 3810485 -31097085 + AluJb SINE Alu 1 312 0 276 286 41 31 chr21 3813403 3813501 -31094069 - MIR3 SINE MIR -6 202 104 364 307 58 22 chr21 3814236 3814373 -31093197 + L2 LINE L2 3125 3266 -6 194 342 125 8 chr21 3815918 3816038 -31091532 + L2 LINE L2 2610 2743 -571 23 33 0 0 chr21 3816983 3817013 -31090557 + AT_rich Low_complexity Low_complexity 1 30 0 955 191 11 6 chr21 3818179 3818357 -31089213 - MER58A DNA MER1_type 0 224 46 948 305 61 27 chr21 3819278 3819917 -31087653 - L2 LINE L2 -5 3308 2636 1187 212 59 28 chr21 3819917 3820271 -31087299 - MLT1A1 LTR MaLR 0 365 1 948 305 61 27 chr21 3820271 3820376 -31087194 - L2 LINE L2 -677 2636 2536 21 71 0 0 chr21 3820757 3820799 -31086771 + AT_rich Low_complexity Low_complexity 1 42 0 930 261 100 97 chr21 3820826 3821392 -31086178 - MLT1F1 LTR MaLR 0 567 2 4386 152 57 10 chr21 3822014 3822543 -31085027 - L1MB2 LINE L1 -3 6168 5586 1914 139 30 3 chr21 3822543 3822838 -31084732 - AluSx SINE Alu -9 303 1 4386 152 57 10 chr21 3822838 3823122 -31084448 - L1MB2 LINE L1 -585 5586 5317 468 86 0 74 chr21 3823150 3823175 -31084395 - L1PB4 LINE L1 -1 6155 6130 2113 145 112 20 chr21 3823175 3823567 -31084003 + MSTA LTR MaLR 1 428 0 468 86 0 74 chr21 3823567 3823622 -31083948 - L1PB4 LINE L1 -26 6130 6081 727 167 21 62 chr21 3823622 3823814 -31083756 - L1MB2 LINE L1 -815 5331 5148 23 0 0 0 chr21 3824180 3824203 -31083367 + AT_rich Low_complexity Low_complexity 1 23 0 248 321 146 15 chr21 3824662 3824949 -31082621 - L2 LINE L2 0 3313 2978 219 341 54 51 chr21 3824986 3825300 -31082270 - L2 LINE L2 -349 2965 2651 1022 181 33 58 chr21 3825302 3825545 -31082025 + MSTD LTR MaLR 3 239 -157 959 195 5 40 chr21 3825581 3825781 -31081789 + MSTD LTR MaLR 204 396 0 306 284 115 58 chr21 3825958 3826219 -31081351 - L2 LINE L2 -911 2403 2128 1008 140 28 0 chr21 3827783 3827962 -31079608 + L1MA5A LINE L1 6110 6293 -4 189 0 0 0 chr21 3827962 3827983 -31079587 + (TTAAA)n Simple_repeat Simple_repeat 3 23 0 21 36 0 0 chr21 3830074 3830102 -31077468 + AT_rich Low_complexity Low_complexity 1 28 0 247 266 165 0 chr21 3830215 3830294 -31077276 - L2 LINE L2 -1 3312 3221 25 51 0 0 chr21 3831751 3831790 -31075780 + AT_rich Low_complexity Low_complexity 1 39 0 186 219 48 105 chr21 3831947 3832052 -31075518 + L2 LINE L2 2545 2643 -671 27 49 0 0 chr21 3833537 3833578 -31073992 + AT_rich Low_complexity Low_complexity 1 41 0 210 71 0 0 chr21 3833951 3833979 -31073591 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 342 233 133 0 chr21 3834505 3834625 -31072945 + L1ME3 LINE L1 6025 6160 -2 1348 13 0 0 chr21 3835756 3835910 -31071660 + L1PA5 LINE L1 5990 6143 -11 279 0 0 0 chr21 3835911 3835942 -31071628 + (TA)n Simple_repeat Simple_repeat 1 31 0 743 260 40 9 chr21 3836153 3836380 -31071190 + L1ME LINE L1 5545 5778 -343 2387 120 10 34 chr21 3836731 3837115 -31070455 - THE1C LTR MaLR 0 375 1 458 61 15 0 chr21 3837185 3837251 -31070319 + (TG)n Simple_repeat Simple_repeat 2 68 0 1602 123 4 4 chr21 3837662 3837889 -31069681 + AluSg/x SINE Alu 72 298 -12 7048 172 19 19 chr21 3838967 3840208 -31067362 - MER52A LTR ERV1 0 1755 515 783 256 45 10 chr21 3840244 3840443 -31067127 - MLT1A1 LTR MaLR -156 209 4 21 0 0 0 chr21 3840615 3840636 -31066934 + AT_rich Low_complexity Low_complexity 1 21 0 1266 180 66 11 chr21 3841343 3841615 -31065955 + LTR1 LTR ERV1 1 287 -498 2672 97 24 0 chr21 3841620 3841990 -31065580 + LTR1 LTR ERV1 407 785 0 21 36 0 0 chr21 3845224 3845252 -31062318 + AT_rich Low_complexity Low_complexity 1 28 0 444 310 84 0 chr21 3846038 3846193 -31061377 + MIR3 SINE MIR 40 207 -1 300 161 25 136 chr21 3846774 3846892 -31060678 + L1ME1 LINE L1 1332 1436 -5423 1849 174 0 6 chr21 3847013 3847324 -31060246 + AluSx SINE Alu 1 309 -3 539 279 36 40 chr21 3847408 3847630 -31059940 + L1ME1 LINE L1 2895 3115 -4023 1844 126 41 80 chr21 3847655 3848044 -31059526 + THE1C LTR MaLR 2 375 0 463 209 135 0 chr21 3848068 3848216 -31059354 - L1M4 LINE L1 -820 5326 5159 2304 241 67 23 chr21 3848304 3848514 -31059056 + L1ME1 LINE L1 6217 6416 -561 1463 178 68 44 chr21 3848514 3848880 -31058690 + THE1C LTR MaLR 1 375 0 2304 241 67 23 chr21 3848880 3849398 -31058172 + L1ME1 LINE L1 6416 6977 0 689 266 55 68 chr21 3849586 3849894 -31057676 - MER68 LTR ERV1 -114 448 145 427 316 0 0 chr21 3850739 3850872 -31056698 + L1MC4a LINE L1 3997 4129 -2017 189 0 0 0 chr21 3851836 3851857 -31055713 + (TA)n Simple_repeat Simple_repeat 1 21 0 2312 236 101 20 chr21 3851953 3852689 -31054881 - LTR50 LTR ERVL 0 795 1 28 48 0 0 chr21 3853143 3853185 -31054385 + AT_rich Low_complexity Low_complexity 1 42 0 1173 150 35 0 chr21 3853296 3853496 -31054074 - L1PA12 LINE L1 -1 6167 5961 324 270 94 61 chr21 3853588 3853871 -31053699 + L1MC4a LINE L1 5567 5856 -271 218 182 23 0 chr21 3853878 3853922 -31053648 - L2 LINE L2 0 3272 3228 204 40 0 0 chr21 3853990 3854015 -31053555 + (CA)n Simple_repeat Simple_repeat 2 26 0 392 315 94 14 chr21 3854871 3855084 -31052486 + L1ME LINE L1 5482 5711 -410 518 288 89 57 chr21 3855169 3855629 -31051941 + L2 LINE L2 2766 3301 -12 557 271 39 72 chr21 3855982 3856189 -31051381 - MIR SINE MIR 0 262 63 189 289 0 0 chr21 3858118 3858163 -31049407 - MIR SINE MIR 0 262 218 255 93 0 0 chr21 3858389 3858432 -31049138 + (T)n Simple_repeat Simple_repeat 1 43 0 4763 91 20 0 chr21 3858823 3859486 -31048084 + L1PA10 LINE L1 5488 6163 -5 738 201 104 0 chr21 3859764 3859928 -31047642 + MER63A DNA MER1_type 1 181 -29 260 304 107 0 chr21 3860021 3860133 -31047437 - LTR33A LTR ERVL -345 178 55 213 292 15 15 chr21 3860288 3860353 -31047217 + L2 LINE L2 3208 3272 0 736 236 30 0 chr21 3860970 3861135 -31046435 - MER67A LTR ERV1 0 543 374 5503 177 39 15 chr21 3861135 3861597 -31045973 + L1MA3 LINE L1 18 467 -7098 2149 117 0 10 chr21 3861597 3861896 -31045674 - AluSq SINE Alu -17 296 1 5503 177 39 15 chr21 3861896 3862711 -31044859 + L1MA3 LINE L1 467 1704 -5861 10978 151 22 6 chr21 3862710 3865376 -31042194 + L1MA3 LINE L1 4674 7383 -341 304 345 0 36 chr21 3865675 3865814 -31041756 + L1MC/D LINE L1 5255 5388 -2420 596 311 44 16 chr21 3865829 3866012 -31041558 + L1MC/D LINE L1 5450 5637 -2171 1092 176 106 119 chr21 3867409 3867921 -31039649 - MLT1D LTR MaLR 0 505 1 405 267 0 0 chr21 3868057 3868143 -31039427 - MER58B DNA MER1_type 0 341 256 1746 222 64 35 chr21 3868146 3868632 -31038938 - MLT1D LTR MaLR -5 500 1 489 71 12 59 chr21 3868762 3868847 -31038723 - L1PA11 LINE L1 0 6174 6094 376 151 28 94 chr21 3869666 3869772 -31037798 - LTR33A LTR ERVL -2 521 423 1330 192 34 44 chr21 3869907 3870204 -31037366 - AluJo SINE Alu -17 295 2 329 254 88 18 chr21 3870378 3870492 -31037078 - LTR50 LTR ERVL -569 226 105 1333 99 6 0 chr21 3870621 3870793 -31036777 + AluSq SINE Alu 1 173 -140 23 0 0 0 chr21 3871682 3871705 -31035865 + AT_rich Low_complexity Low_complexity 1 23 0 286 75 0 0 chr21 3871907 3871947 -31035623 - L1PA3 LINE L1 -2702 3444 3405 16458 21 0 0 chr21 3871947 3874630 -31032940 + L1PA3 LINE L1 3468 6150 -5 744 241 91 91 chr21 3875148 3875570 -31032000 + MER34 LTR ERV1 4 428 -114 3035 157 33 62 chr21 3875570 3876200 -31031370 + LTR9 LTR ERV1 1 612 0 744 241 91 91 chr21 3876200 3876316 -31031254 + MER34 LTR ERV1 427 542 0 2373 122 145 94 chr21 3876518 3877147 -31030423 - MER4A LTR ERV1 -3 661 1 1569 290 20 46 chr21 3877334 3877570 -31030000 + MLT2F LTR ERVL 1 242 -421 1389 234 102 46 chr21 3877570 3878180 -31029390 - LTR48B LTR ERV1 0 644 1 1569 290 20 46 chr21 3878180 3878547 -31029023 + MLT2F LTR ERVL 242 588 -75 2247 214 48 28 chr21 3878577 3879248 -31028322 - MER21B LTR ERV1 -4 859 127 373 267 21 17 chr21 3879240 3879395 -31028175 - MER21B LTR ERV1 -400 205 11 27 0 0 0 chr21 3879472 3879499 -31028071 + AT_rich Low_complexity Low_complexity 1 27 0 1463 172 11 15 chr21 3879544 3879806 -31027764 - MLT1B LTR MaLR 0 390 130 1426 206 58 7 chr21 3879812 3880186 -31027384 + LTR32 LTR ERVL 17 471 0 599 172 82 0 chr21 3880186 3880306 -31027264 - MLT1B LTR MaLR -260 130 1 1696 204 93 80 chr21 3881301 3882074 -31025496 + L1MC5 LINE L1 6858 7640 -321 228 318 22 73 chr21 3882109 3882243 -31025327 - L2 LINE L2 -1018 2296 2172 827 190 76 47 chr21 3882243 3882454 -31025116 - MER20 DNA MER1_type -2 217 1 228 318 22 73 chr21 3882454 3882498 -31025072 - L2 LINE L2 -1142 2172 2127 197 364 39 0 chr21 3882547 3882624 -31024946 + MIR SINE MIR 107 186 -76 1765 181 29 39 chr21 3883229 3883643 -31023927 - L1MB7 LINE L1 -9 6175 5766 981 238 91 11 chr21 3883645 3883910 -31023660 + MLT1E2 LTR MaLR 341 626 0 390 42 0 0 chr21 3883933 3883981 -31023589 + (TG)n Simple_repeat Simple_repeat 1 48 0 1477 185 120 43 chr21 3885561 3885929 -31021641 - MSTD LTR MaLR 0 396 1 222 226 20 20 chr21 3886766 3886868 -31020702 + CT-rich Low_complexity Low_complexity 4 105 0 1906 98 33 4 chr21 3887461 3887737 -31019833 + L1PA11 LINE L1 5884 6167 -7 24 0 0 0 chr21 3887778 3887802 -31019768 + AT_rich Low_complexity Low_complexity 1 24 0 2442 61 0 0 chr21 3888162 3888456 -31019114 + AluSp SINE Alu 18 311 -2 736 293 44 20 chr21 3888572 3888821 -31018749 - MIR SINE MIR -1 261 7 2859 140 29 2 chr21 3888959 3889451 -31018119 + L1MA9 LINE L1 5808 6312 0 1266 157 5 0 chr21 3889838 3890042 -31017528 + MER2 DNA MER2_type 2 206 -138 27 0 0 0 chr21 3890050 3890077 -31017493 + AT_rich Low_complexity Low_complexity 1 27 0 345 290 136 51 chr21 3890208 3890384 -31017186 + MIR SINE MIR 14 204 -58 267 31 0 0 chr21 3890446 3890478 -31017092 + (TA)n Simple_repeat Simple_repeat 2 33 0 2962 211 80 44 chr21 3891053 3891921 -31015649 + L1ME3A LINE L1 5272 6170 0 21 36 0 0 chr21 3892081 3892109 -31015461 + AT_rich Low_complexity Low_complexity 1 28 0 904 241 54 5 chr21 3892252 3892455 -31015115 - MER20 DNA MER1_type 0 219 7 683 196 132 5 chr21 3892873 3893077 -31014493 - MER33 DNA MER1_type -93 231 2 291 218 36 45 chr21 3893193 3893303 -31014267 + L1M4 LINE L1 3717 3825 -2321 1883 150 44 0 chr21 3893421 3893715 -31013855 - AluSx SINE Alu -3 309 3 25 0 0 0 chr21 3893884 3893909 -31013661 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 3894009 3894044 -31013526 + AT_rich Low_complexity Low_complexity 1 35 0 3307 92 20 2 chr21 3894257 3894702 -31012868 + MLT2A2 LTR ERVL 1 453 0 24753 78 18 19 chr21 3894702 3900369 -31007201 + HERVL-A2 LTR ERVL 1 5654 0 2882 92 37 48 chr21 3900370 3900827 -31006743 + MLT2A2 LTR ERVL 2 453 0 21 36 0 0 chr21 3900848 3900876 -31006694 + AT_rich Low_complexity Low_complexity 1 28 0 183 139 0 0 chr21 3901236 3901272 -31006298 + (T)n Simple_repeat Simple_repeat 1 36 0 3839 145 34 32 chr21 3901510 3902226 -31005344 - LTR62 LTR ERVK 0 719 3 2543 72 0 0 chr21 3903203 3903510 -31004060 + AluY SINE Alu 3 309 -2 375 113 0 0 chr21 3903707 3903769 -31003801 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 233 289 79 13 chr21 3904136 3904212 -31003358 + L2 LINE L2 3150 3230 -42 1444 202 63 95 chr21 3904857 3905211 -31002359 + MER39 LTR ERV1 219 554 -153 2192 136 0 0 chr21 3905211 3905520 -31002050 - AluSx SINE Alu -1 311 3 1444 202 63 95 chr21 3905520 3905670 -31001900 + MER39 LTR ERV1 554 707 0 1657 199 0 7 chr21 3906443 3906750 -31000820 - AluJb SINE Alu -7 305 1 183 284 75 15 chr21 3907606 3907673 -30999897 + MIR SINE MIR 69 139 -69 1813 144 23 30 chr21 3907861 3908166 -30999404 - AluSx SINE Alu -9 303 1 1842 127 65 4 chr21 3908650 3908926 -30998644 - AluSx SINE Alu -19 293 1 189 0 0 0 chr21 3909405 3909426 -30998144 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1890 146 11 0 chr21 3909426 3909701 -30997869 - AluSq SINE Alu -32 281 4 209 339 39 24 chr21 3909868 3909995 -30997575 - MIR SINE MIR -123 139 11 21 36 0 0 chr21 3910018 3910046 -30997524 + AT_rich Low_complexity Low_complexity 1 28 0 884 228 53 30 chr21 3911169 3911432 -30996138 + MER39 LTR ERV1 341 609 -98 9855 135 12 21 chr21 3911433 3914173 -30993397 + L1MA1 LINE L1 3579 6295 -7 25 31 0 0 chr21 3914173 3914205 -30993365 + AT_rich Low_complexity Low_complexity 1 32 0 279 244 81 0 chr21 3914213 3914299 -30993271 + MER34B LTR ERV1 473 565 0 226 355 65 0 chr21 3914320 3914413 -30993157 + L2 LINE L2 3174 3272 0 2288 79 3 22 chr21 3914568 3914911 -30992659 - AluY SINE Alu 0 337 1 6178 80 0 5 chr21 3914935 3915281 -30992289 - L1PB1 LINE L1 0 6151 5805 327 85 0 0 chr21 3915281 3915328 -30992242 + (TG)n Simple_repeat Simple_repeat 1 47 0 6178 80 0 5 chr21 3915328 3915929 -30991641 - L1PB1 LINE L1 -346 5805 5187 1373 247 9 0 chr21 3915934 3916278 -30991292 + L1PB1 LINE L1 4833 5179 -967 1231 174 37 30 chr21 3916400 3916670 -30990900 + MLT2D LTR ERVL 1 272 -142 30 45 0 0 chr21 3918364 3918408 -30989162 + AT_rich Low_complexity Low_complexity 1 44 0 2312 163 32 12 chr21 3919183 3919589 -30987981 + MLT2C2 LTR ERVL 3 416 -48 348 43 0 0 chr21 3919594 3919640 -30987930 + (TC)n Simple_repeat Simple_repeat 1 46 0 453 19 0 0 chr21 3919640 3919694 -30987876 + (TG)n Simple_repeat Simple_repeat 2 55 0 367 216 0 43 chr21 3923646 3923831 -30983739 + (TAAA)n Simple_repeat Simple_repeat 4 180 0 67 55 0 0 chr21 3923838 3923947 -30983623 + AT_rich Low_complexity Low_complexity 1 109 0 960 143 87 6 chr21 3923947 3924108 -30983462 - AluSq SINE Alu -138 175 2 8036 215 40 44 chr21 3924496 3926671 -30980899 + L1MC1 LINE L1 24 2378 -4229 541 259 77 95 chr21 3926671 3927072 -30980498 + MSTD LTR MaLR 1 394 -2 8036 215 40 44 chr21 3927072 3927428 -30980142 + L1MC1 LINE L1 2378 2734 -3873 9272 202 43 23 chr21 3927563 3928236 -30979334 + L1MC1 LINE L1 2866 3524 -3089 2516 50 0 0 chr21 3928236 3928536 -30979034 + AluY SINE Alu 2 301 -10 9272 202 43 23 chr21 3928536 3930303 -30977267 + L1MC1 LINE L1 3524 5254 -1359 1299 142 41 5 chr21 3930303 3930522 -30977048 - MER30 DNA MER1_type -1 229 3 9272 202 43 23 chr21 3930522 3931102 -30976468 + L1MC1 LINE L1 5254 5957 -656 2877 177 60 6 chr21 3931102 3931581 -30975989 + MLT2B3 LTR ERVL 3 514 -40 723 10 31 0 chr21 3931581 3931677 -30975893 + (TCTA)n Simple_repeat Simple_repeat 3 101 0 2877 177 60 6 chr21 3931677 3931718 -30975852 + MLT2B3 LTR ERVL 514 551 -3 9272 202 43 23 chr21 3931718 3932024 -30975546 + L1MC1 LINE L1 5957 6255 -358 611 200 0 0 chr21 3932025 3932130 -30975440 + U6 snRNA snRNA 2 106 -1 1116 174 9 40 chr21 3932134 3932375 -30975195 + L1MC1 LINE L1 6396 6624 0 211 196 87 0 chr21 3933183 3933229 -30974341 + L2 LINE L2 3263 3312 -1 1834 178 0 13 chr21 3935069 3935373 -30972197 - AluJo SINE Alu -12 300 1 219 310 99 7 chr21 3935430 3935572 -30971998 - MIR SINE MIR -2 260 106 2270 111 0 13 chr21 3936777 3937093 -30970477 - AluSx SINE Alu 0 312 1 2198 100 0 0 chr21 3937177 3937466 -30970104 - AluSc SINE Alu 0 309 21 322 319 0 18 chr21 3937504 3937617 -30969953 - MER34 LTR ERV1 -431 111 1 1997 174 11 19 chr21 3938619 3938987 -30968583 - MLT1A1 LTR MaLR 0 365 1 2213 111 74 11 chr21 3941003 3941356 -30966214 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr21 3941604 3941632 -30965938 + AT_rich Low_complexity Low_complexity 1 28 0 1626 184 0 14 chr21 3943045 3943327 -30964243 + AluJb SINE Alu 1 278 -34 393 149 0 0 chr21 3943327 3943394 -30964176 + (CA)n Simple_repeat Simple_repeat 2 68 0 351 113 0 0 chr21 3943397 3943450 -30964120 + (GGAA)n Simple_repeat Simple_repeat 2 54 0 241 238 159 0 chr21 3943606 3943669 -30963901 + MIR SINE MIR 72 144 -118 25 65 0 0 chr21 3944299 3944345 -30963225 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 3944709 3944731 -30962839 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr21 3946195 3946234 -30961336 + (CA)n Simple_repeat Simple_repeat 2 40 0 393 39 0 0 chr21 3946233 3946284 -30961286 + (GA)n Simple_repeat Simple_repeat 2 52 0 423 0 0 0 chr21 3946995 3947042 -30960528 + (TG)n Simple_repeat Simple_repeat 1 47 0 2153 135 0 0 chr21 3947366 3947670 -30959900 + AluSx SINE Alu 1 304 -8 4524 158 38 11 chr21 3947969 3948934 -30958636 + L1MB3 LINE L1 5115 6101 -82 864 146 0 0 chr21 3948934 3949064 -30958506 + FRAM SINE Alu 28 157 -19 23 42 0 21 chr21 3949064 3949075 -30958495 + AT_rich Low_complexity Low_complexity 1 11 -36 402 143 71 0 chr21 3949075 3949159 -30958411 + L1MB3 LINE L1 6094 6183 0 23 42 0 21 chr21 3949159 3949195 -30958375 + AT_rich Low_complexity Low_complexity 11 47 0 1855 142 161 11 chr21 3951148 3951520 -30956050 - MSTA LTR MaLR 0 428 1 289 349 18 9 chr21 3951547 3951656 -30955914 - L3 LINE CR1 -30 1547 1438 22179 73 6 1 chr21 3951733 3954573 -30952997 - HERVL-A1 LTR ERVL -2798 2856 3 2864 86 19 62 chr21 3954575 3955039 -30952531 - MLT2A1 LTR ERVL 0 444 1 883 103 15 0 chr21 3955070 3955206 -30952364 - L1MB7 LINE L1 -9 6175 6038 3209 126 68 18 chr21 3956342 3956889 -30950681 + MER4B LTR ERV1 37 610 0 1955 141 0 0 chr21 3958034 3958360 -30949210 - AluJb SINE Alu 0 326 1 960 88 13 6 chr21 3958440 3958599 -30948971 + (TTCC)n Simple_repeat Simple_repeat 2 161 0 195 156 178 0 chr21 3959972 3960017 -30947553 + MIR SINE MIR 210 262 0 318 247 32 11 chr21 3960116 3960209 -30947361 - MER112 DNA MER1_type -33 227 133 1971 205 74 13 chr21 3960669 3961143 -30946427 - MLT1D LTR MaLR 0 505 3 23 0 0 0 chr21 3962135 3962158 -30945412 + AT_rich Low_complexity Low_complexity 1 23 0 276 325 106 0 chr21 3962451 3962574 -30944996 + MIR SINE MIR 114 249 -13 1994 117 3 29 chr21 3962633 3962940 -30944630 + AluSx SINE Alu 7 305 -7 2236 96 3 0 chr21 3963104 3963397 -30944173 - AluY SINE Alu -17 294 1 219 217 22 0 chr21 3963602 3963648 -30943922 + (TA)n Simple_repeat Simple_repeat 2 48 0 2658 229 31 21 chr21 3963731 3964407 -30943163 + L1MD3 LINE L1 7313 7995 0 2298 78 7 3 chr21 3964448 3964743 -30942827 - AluY SINE Alu -15 296 1 749 282 81 44 chr21 3964956 3965555 -30942015 + L1ME3A LINE L1 5296 5951 -219 1984 168 11 38 chr21 3965592 3965961 -30941609 + MLT1A1 LTR MaLR 1 359 -6 181 300 153 60 chr21 3966816 3966966 -30940604 - L2 LINE L2 -620 2694 2531 204 400 92 0 chr21 3968112 3968242 -30939328 + L2 LINE L2 3122 3263 -9 240 305 12 0 chr21 3969351 3969433 -30938137 + (TA)n Simple_repeat Simple_repeat 2 84 0 2430 33 0 0 chr21 3970495 3970770 -30936800 - AluY SINE Alu -16 295 21 619 277 59 46 chr21 3972083 3972321 -30935249 - MIR SINE MIR -7 255 15 348 318 42 50 chr21 3972377 3972616 -30934954 - L1ME LINE L1 -404 5760 5524 2166 125 0 0 chr21 3972944 3973248 -30934322 - AluSx SINE Alu -8 304 1 30 27 0 0 chr21 3973600 3973637 -30933933 + AT_rich Low_complexity Low_complexity 1 37 0 305 315 92 33 chr21 3973720 3973904 -30933666 - MIR SINE MIR -18 244 50 2321 61 0 0 chr21 3974085 3974364 -30933206 - AluY SINE Alu -32 279 1 3078 128 0 0 chr21 3975212 3975682 -30931888 - L1PB1 LINE L1 -4 6147 5678 1654 122 15 0 chr21 3976609 3976879 -30930691 + L1MA2 LINE L1 6031 6304 0 1134 175 41 26 chr21 3977011 3977280 -30930290 - MER97c DNA MER1_type? -387 703 431 378 0 0 0 chr21 3977284 3977326 -30930244 + (TG)n Simple_repeat Simple_repeat 2 43 0 1021 197 59 16 chr21 3977351 3977605 -30929965 - MER97c DNA MER1_type? -758 332 68 1801 146 101 5 chr21 3978262 3978661 -30928909 + LTR23 LTR ERV1 1 467 0 1487 163 19 19 chr21 3979465 3979729 -30927841 + AluJo SINE Alu 6 269 -43 37 23 0 0 chr21 3979739 3979783 -30927787 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr21 3981041 3981070 -30926500 + AT_rich Low_complexity Low_complexity 1 29 0 243 227 91 30 chr21 3981935 3982001 -30925569 - MIR SINE MIR -111 151 82 430 187 1 49 chr21 3982004 3982342 -30925228 + AluJo SINE Alu 1 303 -9 1718 167 0 56 chr21 3982490 3982813 -30924757 + AluJo SINE Alu 1 305 -7 1976 174 40 0 chr21 3982851 3983202 -30924368 + MLT1A1 LTR MaLR 1 365 0 1198 198 28 0 chr21 3983455 3983672 -30923898 - AluJo SINE Alu -21 291 69 1542 216 0 0 chr21 3984240 3984536 -30923034 - AluJo SINE Alu -11 301 6 21 0 0 0 chr21 3985165 3985186 -30922384 + AT_rich Low_complexity Low_complexity 1 21 0 333 47 0 0 chr21 3985311 3985354 -30922216 + (CA)n Simple_repeat Simple_repeat 2 44 0 2360 77 3 19 chr21 3986671 3986981 -30920589 + AluSp SINE Alu 1 305 -8 2227 107 7 0 chr21 3987906 3988214 -30919356 - AluSx SINE Alu 0 312 3 4665 67 17 33 chr21 3989931 3990574 -30916996 - SVA Other Other 0 1386 754 2276 70 0 14 chr21 3991243 3991554 -30916016 - AluY SINE Alu 0 307 1 1879 153 0 0 chr21 3991556 3991850 -30915720 - AluSx SINE Alu -18 294 1 1391 155 33 19 chr21 3993487 3993804 -30913766 + MLT1A1 LTR MaLR 11 365 0 573 255 2 14 chr21 3993809 3993974 -30913596 - MLT1B LTR MaLR 0 390 251 573 232 12 54 chr21 3994437 3994644 -30912926 + MLT1F LTR MaLR 1 185 -357 808 179 123 49 chr21 3994677 3994907 -30912663 + MLT1F LTR MaLR 320 540 -2 1667 214 50 60 chr21 3995967 3996452 -30911118 + L1MC4 LINE L1 6765 7244 -798 31 0 0 0 chr21 3996524 3996555 -30911015 + AT_rich Low_complexity Low_complexity 1 31 0 333 0 0 0 chr21 3996576 3996613 -30910957 + (CA)n Simple_repeat Simple_repeat 2 38 0 1648 206 52 3 chr21 3996613 3996939 -30910631 - MLT2C1 LTR ERVL -55 342 1 377 248 174 0 chr21 3996939 3997048 -30910522 + L1MC4 LINE L1 7257 7384 -658 1370 238 58 69 chr21 3997057 3997246 -30910324 + L1MC4 LINE L1 7438 7627 -415 2167 102 7 7 chr21 3997246 3997539 -30910031 + AluSg SINE Alu 6 298 -12 1370 238 58 69 chr21 3997539 3997947 -30909623 + L1MC4 LINE L1 7627 8029 -13 1233 183 9 9 chr21 3998436 3998666 -30908904 - AluJb SINE Alu -5 307 78 24 0 0 0 chr21 3999496 3999520 -30908050 + AT_rich Low_complexity Low_complexity 1 24 0 209 267 0 17 chr21 4000625 4000685 -30906885 + L2 LINE L2 3255 3313 0 451 345 18 85 chr21 4001359 4001806 -30905764 - L2 LINE L2 -49 3223 2807 23 0 0 0 chr21 4002208 4002231 -30905339 + AT_rich Low_complexity Low_complexity 1 23 0 390 277 30 0 chr21 4002351 4002452 -30905118 + MER5A DNA MER1_type 9 112 -77 1830 207 47 51 chr21 4003108 4003615 -30903955 - MLT1D LTR MaLR 0 505 1 357 316 59 53 chr21 4004405 4004898 -30902672 + L2 LINE L2 1613 2108 -1206 1903 208 11 0 chr21 4004934 4005295 -30902275 + MLT1A1 LTR MaLR 1 365 0 306 27 0 0 chr21 4006075 4006112 -30901458 - AluS SINE Alu -218 85 49 483 101 13 0 chr21 4006784 4006863 -30900707 - MADE1 DNA Mariner 0 80 1 2148 135 0 0 chr21 4007170 4007521 -30900049 - AluSx SINE Alu 0 351 1 820 250 48 0 chr21 4007659 4007847 -30899723 + MER20 DNA MER1_type 22 218 -1 1559 208 16 13 chr21 4008172 4008536 -30899034 + AluJo SINE Alu 3 367 0 260 189 14 0 chr21 4009269 4009343 -30898227 + (CCA)n Simple_repeat Simple_repeat 1 75 0 3959 187 31 23 chr21 4010115 4010896 -30896674 - LTR39 LTR ERV1 -7 787 1 602 51 13 0 chr21 4010955 4011034 -30896536 - MADE1 DNA Mariner 0 80 1 5083 165 47 18 chr21 4012500 4013602 -30893968 + L1MC2 LINE L1 5200 6332 -12 8231 84 40 18 chr21 4014946 4016892 -30890678 + L1PA7 LINE L1 4187 6153 -1 34 24 0 0 chr21 4017058 4017099 -30890471 + AT_rich Low_complexity Low_complexity 1 41 0 1539 252 66 55 chr21 4017161 4017240 -30890330 - L2 LINE L2 -910 2404 2327 2580 98 13 16 chr21 4017240 4017616 -30889954 - THE1C LTR MaLR 0 375 1 1539 252 66 55 chr21 4017616 4018367 -30889203 - L2 LINE L2 -987 2327 1458 428 226 89 42 chr21 4019631 4019799 -30887771 + L1MCa LINE L1 157 332 -6232 832 296 58 4 chr21 4019799 4020056 -30887514 + L1MCa LINE L1 171 441 -5604 792 267 43 19 chr21 4020267 4020373 -30887197 + L1MCa LINE L1 570 672 -5373 2647 146 19 9 chr21 4020373 4020797 -30886773 + MSTC LTR MaLR 1 428 0 792 267 43 19 chr21 4020797 4020948 -30886622 + L1MCa LINE L1 672 833 -5212 1680 209 7 27 chr21 4020963 4021370 -30886200 + L1MCa LINE L1 895 1293 -5271 373 299 90 28 chr21 4022202 4022346 -30885224 + MER5B DNA MER1_type 26 178 0 201 39 0 0 chr21 4022414 4022440 -30885130 + (CA)n Simple_repeat Simple_repeat 2 27 0 243 125 0 0 chr21 4022440 4022480 -30885090 + (TC)n Simple_repeat Simple_repeat 1 40 0 2110 102 85 20 chr21 4022863 4023205 -30884365 + THE1B LTR MaLR 1 364 0 2925 113 7 9 chr21 4023435 4023876 -30883694 + L1PA16 LINE L1 5718 6157 -9 2101 137 0 0 chr21 4023897 4024189 -30883381 + AluSx SINE Alu 1 292 -20 344 188 0 50 chr21 4024189 4024269 -30883301 + L1MC4 LINE L1 6617 6692 -1350 333 0 0 0 chr21 4024270 4024307 -30883263 + (GA)n Simple_repeat Simple_repeat 2 38 0 699 243 90 31 chr21 4025571 4025793 -30881777 - MIR SINE MIR -10 252 18 251 337 48 0 chr21 4025788 4025871 -30881699 + MER5A DNA MER1_type 9 95 -94 2238 95 0 0 chr21 4026080 4026386 -30881184 + AluSx SINE Alu 2 307 0 483 156 0 0 chr21 4026400 4026477 -30881093 + U13 snRNA snRNA 1 77 -27 504 0 0 0 chr21 4026678 4026734 -30880836 + (CA)n Simple_repeat Simple_repeat 2 57 0 751 244 13 0 chr21 4026746 4026902 -30880668 - FAM SINE Alu -17 158 1 5105 146 19 3 chr21 4027856 4028712 -30878858 - L1MA4 LINE L1 -24 6276 5408 828 134 21 70 chr21 4028752 4028938 -30878632 + L1M1 LINE L1 5254 5430 -870 1747 188 7 3 chr21 4029799 4030103 -30877467 + AluJo SINE Alu 1 305 -7 1864 173 7 0 chr21 4030221 4030528 -30877042 + AluJo SINE Alu 1 309 -3 2222 113 3 3 chr21 4030670 4030979 -30876591 - AluSx SINE Alu -3 309 1 21 57 0 0 chr21 4031966 4032001 -30875569 + AT_rich Low_complexity Low_complexity 1 35 0 342 0 0 0 chr21 4032120 4032158 -30875412 + (TG)n Simple_repeat Simple_repeat 2 39 0 2397 67 3 3 chr21 4032749 4033047 -30874523 + AluSp SINE Alu 1 298 -15 210 277 32 24 chr21 4033378 4033463 -30874107 + MER5B DNA MER1_type 47 143 -46 4877 115 1 6 chr21 4035902 4036635 -30870935 + L1PA14 LINE L1 5430 6159 -2 2231 105 0 0 chr21 4036829 4037115 -30870455 - AluY SINE Alu -25 286 1 196 200 36 36 chr21 4037395 4037450 -30870120 + MIR3 SINE MIR 3 57 -151 417 86 129 0 chr21 4037710 4037780 -30869790 + MADE1 DNA Mariner 2 80 0 2188 181 16 41 chr21 4037796 4037980 -30869590 + MSTB1 LTR MaLR 1 188 -244 2269 92 3 16 chr21 4037980 4038295 -30869275 - AluY SINE Alu 0 311 1 2188 181 16 41 chr21 4038295 4038553 -30869017 + MSTB1 LTR MaLR 188 432 0 23 0 0 0 chr21 4038571 4038594 -30868976 + AT_rich Low_complexity Low_complexity 1 23 0 1140 212 89 43 chr21 4039020 4039412 -30868158 - Charlie1 DNA MER1_type 0 2761 2352 3075 200 7 2 chr21 4039526 4040137 -30867433 - MSTB1-int LTR MaLR -1037 614 1 2348 142 58 22 chr21 4040137 4040554 -30867016 - MSTB1 LTR MaLR 0 432 1 503 295 74 41 chr21 4040563 4040807 -30866763 + MIR SINE MIR 2 253 -9 2129 242 78 5 chr21 4042029 4042629 -30864941 + LTR48B LTR ERV1 1 644 0 223 96 231 0 chr21 4043084 4043136 -30864434 - MIR SINE MIR -127 135 72 1666 197 31 31 chr21 4043730 4044120 -30863450 + MLT1B LTR MaLR 1 390 0 1924 130 7 7 chr21 4044462 4044761 -30862809 - AluSx SINE Alu -13 299 1 401 188 0 38 chr21 4044922 4045002 -30862568 + FLAM_A SINE Alu 17 93 -49 1568 203 7 62 chr21 4045199 4045618 -30861952 - MSTD LTR MaLR 0 396 1 23 0 0 0 chr21 4047573 4047596 -30859974 + GC_rich Low_complexity Low_complexity 1 23 0 200 181 0 83 chr21 4047627 4047699 -30859871 + G-rich Low_complexity Low_complexity 4 69 0 249 33 0 0 chr21 4048100 4048130 -30859440 + (CCG)n Simple_repeat Simple_repeat 3 32 0 26 30 0 0 chr21 4048245 4048278 -30859292 + GC_rich Low_complexity Low_complexity 1 33 0 267 133 0 0 chr21 4048700 4048745 -30858825 + (T)n Simple_repeat Simple_repeat 1 45 0 24 103 0 0 chr21 4050389 4050476 -30857094 + AT_rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chr21 4050870 4050893 -30856677 + GC_rich Low_complexity Low_complexity 1 23 0 295 229 16 0 chr21 4051051 4051112 -30856458 + L2 LINE L2 3247 3308 -5 716 139 9 0 chr21 4051195 4051303 -30856267 + AluJb SINE Alu 1 109 -203 2326 88 0 10 chr21 4051304 4051611 -30855959 + AluSg SINE Alu 2 305 -5 435 295 70 62 chr21 4052619 4052860 -30854710 - MIR SINE MIR -19 243 1 27 49 0 0 chr21 4052912 4052953 -30854617 + AT_rich Low_complexity Low_complexity 1 41 0 1779 154 18 21 chr21 4052969 4053299 -30854271 - MER2 DNA MER2_type 0 344 16 360 64 0 0 chr21 4053709 4053756 -30853814 + (TG)n Simple_repeat Simple_repeat 2 48 0 1814 152 0 0 chr21 4053850 4054113 -30853457 - AluSx SINE Alu -20 292 30 40 49 0 0 chr21 4054341 4054402 -30853168 + AT_rich Low_complexity Low_complexity 1 61 0 21 36 0 0 chr21 4054577 4054605 -30852965 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 4055036 4055058 -30852512 + AT_rich Low_complexity Low_complexity 1 22 0 542 332 65 45 chr21 4055359 4055519 -30852051 - L1M4 LINE L1 -1050 5096 4941 945 172 8 107 chr21 4055519 4055781 -30851789 - MER46A DNA MER2_type 0 236 1 542 332 65 45 chr21 4055781 4056021 -30851549 - L1M4 LINE L1 -1205 4941 4688 233 344 70 0 chr21 4056291 4056419 -30851151 - L1M4 LINE L1 -1796 4350 4214 1505 208 19 17 chr21 4056419 4056876 -30850694 + LTR2B LTR ERV1 1 490 0 297 0 0 0 chr21 4058386 4058419 -30849151 + (T)n Simple_repeat Simple_repeat 1 33 0 879 255 42 49 chr21 4058718 4059149 -30848421 - L1ME2 LINE L1 -112 6052 5625 823 252 16 8 chr21 4059153 4059392 -30848178 - L1ME2 LINE L1 -579 5585 5348 455 298 13 0 chr21 4060455 4060606 -30846964 - MER52A LTR ERV1 0 1755 1603 555 258 77 50 chr21 4060990 4061211 -30846359 - MER52A LTR ERV1 -458 1297 1071 571 203 36 51 chr21 4061372 4061510 -30846060 - LTR28 LTR ERV1 -869 151 16 1548 148 51 4 chr21 4062063 4062319 -30845251 - AluSx SINE Alu -5 307 40 2093 125 3 0 chr21 4062329 4062632 -30844938 - AluSq SINE Alu -9 304 1 201 175 0 0 chr21 4062775 4062815 -30844755 + CT-rich Low_complexity Low_complexity 2 41 0 328 173 127 0 chr21 4062939 4063049 -30844521 - L1M LINE L1 -789 5391 5268 2455 80 3 3 chr21 4063207 4063520 -30844050 - AluSq SINE Alu 0 313 1 829 228 95 78 chr21 4063557 4064211 -30843359 - L1ME2 LINE L1 -1086 5060 4373 1624 109 0 13 chr21 4064211 4064440 -30843130 - AluSc SINE Alu -83 226 1 829 228 95 78 chr21 4064440 4064544 -30843026 - L1ME2 LINE L1 -1773 4373 4272 397 277 43 0 chr21 4064608 4064702 -30842868 - L1ME2 LINE L1 -2028 4118 4021 465 229 0 0 chr21 4064951 4065047 -30842523 - Tigger7 DNA MER2_type 0 2487 2392 350 81 65 0 chr21 4065144 4065206 -30842364 - Tigger7 DNA MER2_type -79 2408 2343 586 105 70 99 chr21 4065213 4065384 -30842186 - Tigger7 DNA MER2_type -78 2409 2244 910 203 124 33 chr21 4065381 4065622 -30841948 - Tigger7 DNA MER2_type -287 263 1 346 324 71 13 chr21 4065622 4065847 -30841723 - L1M4 LINE L1 -905 5241 5004 25 0 0 28 chr21 4066025 4066039 -30841531 + AT_rich Low_complexity Low_complexity 1 14 -21 1562 180 3 62 chr21 4066039 4066344 -30841226 - AluJo SINE Alu -25 287 1 25 0 0 28 chr21 4066344 4066365 -30841205 + AT_rich Low_complexity Low_complexity 14 35 0 22 0 0 0 chr21 4066757 4066779 -30840791 + AT_rich Low_complexity Low_complexity 1 22 0 752 208 105 82 chr21 4067627 4067921 -30839649 + MER21B LTR ERV1 1 301 -562 285 29 0 0 chr21 4067926 4067960 -30839610 + (TG)n Simple_repeat Simple_repeat 2 35 0 2047 137 6 25 chr21 4067960 4068274 -30839296 - AluSx SINE Alu -4 308 1 2310 68 0 39 chr21 4068355 4068662 -30838908 - AluY SINE Alu -16 295 1 2129 105 7 0 chr21 4069688 4069973 -30837597 - AluSq SINE Alu -22 291 5 2291 81 14 0 chr21 4069973 4070258 -30837312 - AluSg SINE Alu -21 289 1 376 192 81 7 chr21 4071469 4071616 -30835954 - LTR48 LTR ERV1 -22 738 450 304 216 59 10 chr21 4071653 4071755 -30835815 - LTR48 LTR ERV1 -302 485 379 480 255 7 21 chr21 4071797 4071942 -30835628 - LTR49 LTR ERV1 -452 143 1 320 288 50 12 chr21 4072074 4072154 -30835416 - L2 LINE L2 0 3272 3190 2655 189 80 34 chr21 4073434 4074169 -30833401 - LTR48 LTR ERV1 -24 742 1 197 312 0 0 chr21 4074393 4074441 -30833129 + L2 LINE L2 3242 3289 -24 507 299 19 19 chr21 4075803 4075957 -30831613 + MER5A DNA MER1_type 35 188 -1 367 77 19 0 chr21 4075980 4076028 -30831542 - THE1B LTR MaLR 0 364 316 2075 122 6 6 chr21 4076028 4076348 -30831222 + THE1B LTR MaLR 1 320 -44 2299 130 6 6 chr21 4076348 4076702 -30830868 - THE1B LTR MaLR 0 364 11 22 0 0 0 chr21 4076702 4076724 -30830846 + AT_rich Low_complexity Low_complexity 1 22 0 3050 117 61 23 chr21 4077034 4077562 -30830008 - MER4B LTR ERV1 0 610 63 274 217 58 0 chr21 4077794 4077863 -30829707 + MLT1L LTR MaLR 3 75 -540 1425 239 119 13 chr21 4078495 4079017 -30828553 - L1MC4 LINE L1 -136 7906 7330 4254 142 19 4 chr21 4079017 4079721 -30827849 + MER50 LTR ERV1 1 714 -20 475 203 98 0 chr21 4079722 4079845 -30827725 - L1MC4 LINE L1 -712 7330 7196 746 279 57 12 chr21 4081519 4081763 -30825807 - MIR SINE MIR 0 262 8 425 215 0 11 chr21 4082361 4082454 -30825116 + MIR SINE MIR 171 262 0 653 324 58 0 chr21 4082680 4082921 -30824649 + L2 LINE L2 2574 2828 -486 346 303 64 32 chr21 4083130 4083318 -30824252 - L1M4 LINE L1 -1543 4603 4410 23 54 0 0 chr21 4084688 4084725 -30822845 + AT_rich Low_complexity Low_complexity 1 37 0 220 350 45 38 chr21 4084886 4085043 -30822527 + L2 LINE L2 2813 2970 -343 257 211 56 14 chr21 4088477 4088548 -30819022 - MER3 DNA MER1_type -134 75 2 197 278 44 22 chr21 4089233 4089323 -30818247 - L2 LINE L2 -377 2936 2845 395 266 17 85 chr21 4091046 4091223 -30816347 - MER102b DNA MER1_type -23 318 154 4554 202 94 38 chr21 4091415 4092778 -30814792 - Charlie1a DNA MER1_type -15 1440 2 23 0 0 0 chr21 4093484 4093507 -30814063 + GC_rich Low_complexity Low_complexity 1 23 0 1106 177 29 19 chr21 4094387 4094596 -30812974 + AluJo SINE Alu 84 294 -18 926 251 23 0 chr21 4096084 4096303 -30811267 - MER58A DNA MER1_type 0 224 1 260 266 71 35 chr21 4096508 4096621 -30810949 - MIR SINE MIR -67 195 79 33 73 0 0 chr21 4097186 4097254 -30810316 + AT_rich Low_complexity Low_complexity 1 68 0 25 31 0 0 chr21 4097490 4097522 -30810048 + AT_rich Low_complexity Low_complexity 1 32 0 320 226 132 9 chr21 4098435 4098541 -30809029 - HERVL68 LTR ERVL -1026 2011 1893 1546 278 42 7 chr21 4098712 4099161 -30808409 - HERVL68 LTR ERVL -1682 3848 3384 994 336 45 24 chr21 4099213 4099746 -30807824 + L1M2a LINE L1 4 547 -6621 3509 255 53 35 chr21 4100309 4101420 -30806150 + L1M2a LINE L1 1720 2809 -4358 2337 75 0 40 chr21 4101420 4101741 -30805829 + AluY SINE Alu 1 308 -3 3509 255 53 35 chr21 4101741 4102035 -30805535 + L1M2a LINE L1 2809 3096 -4071 2196 107 3 0 chr21 4102035 4102334 -30805236 + AluSp SINE Alu 1 300 -13 3509 255 53 35 chr21 4102334 4103091 -30804479 + L1M2a LINE L1 3096 3604 -3563 8951 196 43 4 chr21 4103104 4105218 -30802352 + L1M2a LINE L1 3651 5887 -1280 409 296 40 15 chr21 4105229 4105428 -30802142 + L1M4 LINE L1 4417 4620 -1526 257 350 60 0 chr21 4112503 4112620 -30794950 + L2 LINE L2 3190 3313 0 550 283 63 27 chr21 4114575 4114902 -30792668 + L1MEc LINE L1 878 1186 -5019 427 268 75 30 chr21 4114964 4115296 -30792274 + L1MEc LINE L1 1298 1644 -4752 263 307 149 29 chr21 4115411 4115487 -30792083 + L2 LINE L2 1732 1797 -1517 1409 176 54 45 chr21 4115487 4115822 -30791748 + MER44D DNA MER2_type 1 608 -1 263 307 149 29 chr21 4115822 4115986 -30791584 + L2 LINE L2 1797 2001 -1313 216 279 15 15 chr21 4116051 4116119 -30791451 + MER5B DNA MER1_type 111 178 0 355 118 0 0 chr21 4116347 4116398 -30791172 + L2 LINE L2 3263 3313 0 724 239 51 0 chr21 4118083 4118259 -30789311 + MIR SINE MIR 77 261 -1 27 49 0 0 chr21 4118268 4118309 -30789261 + AT_rich Low_complexity Low_complexity 1 41 0 1664 260 16 30 chr21 4120142 4120768 -30786802 + L1MEc LINE L1 2812 3428 -2787 1507 272 15 6 chr21 4120862 4121333 -30786237 + L1MEc LINE L1 3568 4042 -2173 204 130 74 19 chr21 4122113 4122167 -30785403 + (TTAAA)n Simple_repeat Simple_repeat 5 61 0 44 63 0 0 chr21 4122187 4122266 -30785304 + AT_rich Low_complexity Low_complexity 1 79 0 390 218 0 0 chr21 4122433 4122511 -30785059 + MIR SINE MIR 185 262 0 238 224 0 0 chr21 4124148 4124197 -30783373 + T-rich Low_complexity Low_complexity 1 49 0 1627 190 0 28 chr21 4124651 4124972 -30782598 - AluJo SINE Alu 0 312 1 1205 258 81 30 chr21 4125173 4125607 -30781963 - MLT1C LTR MaLR -5 462 7 243 0 0 0 chr21 4126291 4126318 -30781252 + (TG)n Simple_repeat Simple_repeat 2 28 0 264 215 152 13 chr21 4127087 4127166 -30780404 - MLT1J2 LTR MaLR -288 162 73 3858 141 26 5 chr21 4127235 4127879 -30779691 + L1MB2 LINE L1 5484 6141 -30 341 316 90 13 chr21 4128601 4128756 -30778814 - MIR SINE MIR -32 230 64 192 214 0 0 chr21 4129856 4129912 -30777658 + (TA)n Simple_repeat Simple_repeat 1 56 0 2413 60 0 10 chr21 4130111 4130411 -30777159 + AluY SINE Alu 1 297 -14 357 380 80 31 chr21 4131193 4131645 -30775925 + L2 LINE L2 1466 1939 -1375 1060 139 23 0 chr21 4131648 4131820 -30775750 + THE1A LTR MaLR 1 176 -179 489 123 12 0 chr21 4131815 4131896 -30775674 - THE1A LTR MaLR -120 235 154 1396 89 5 0 chr21 4131891 4132082 -30775488 + THE1A LTR MaLR 164 355 0 9989 103 11 4 chr21 4132082 4133460 -30774110 + THE1A-int LTR MaLR 1 1388 -192 1270 88 10 5 chr21 4133580 4133772 -30773798 + THE1A-int LTR MaLR 1388 1580 0 2413 116 3 3 chr21 4133772 4134127 -30773443 + THE1A LTR MaLR 1 355 0 2152 119 0 0 chr21 4134595 4134890 -30772680 + AluSx SINE Alu 2 296 -16 183 313 34 82 chr21 4134949 4135182 -30772388 + L2 LINE L2 2429 2650 -664 1915 148 10 62 chr21 4135251 4135635 -30771935 - THE1B LTR MaLR 0 364 1 478 284 59 34 chr21 4135736 4135940 -30771630 + L2 LINE L2 2851 3059 -213 25 75 0 0 chr21 4136006 4136059 -30771511 + AT_rich Low_complexity Low_complexity 1 53 0 297 330 0 41 chr21 4136092 4136189 -30771381 + L2 LINE L2 3153 3245 -27 293 238 152 57 chr21 4137280 4137385 -30770185 + L2 LINE L2 3199 3313 0 22 35 0 0 chr21 4138381 4138410 -30769160 + AT_rich Low_complexity Low_complexity 1 29 0 312 331 23 0 chr21 4138934 4139064 -30768506 - L1MC4a LINE L1 -1896 5912 5780 288 234 95 33 chr21 4139126 4139261 -30768309 - L1MC4a LINE L1 -481 5640 5545 380 176 0 9 chr21 4142241 4142349 -30765221 + CT-rich Low_complexity Low_complexity 4 110 0 1867 136 4 0 chr21 4142352 4142631 -30764939 - AluSx SINE Alu -3 309 30 21 0 0 0 chr21 4145031 4145052 -30762518 + AT_rich Low_complexity Low_complexity 1 21 0 438 94 0 0 chr21 4145486 4145550 -30762020 + (TG)n Simple_repeat Simple_repeat 2 65 0 221 308 75 75 chr21 4146137 4146390 -30761180 - L2 LINE L2 -730 2584 2332 2199 94 0 3 chr21 4146395 4146681 -30760889 - AluSc SINE Alu -24 285 1 1254 117 27 0 chr21 4146917 4147105 -30760465 - L1PA15 LINE L1 -21 6144 5952 321 304 72 8 chr21 4147107 4147232 -30760338 - L1MC/D LINE L1 -2181 5627 5495 233 211 48 72 chr21 4147315 4147481 -30760089 - L1 LINE L1 -770 5376 5215 2129 116 3 3 chr21 4150481 4150792 -30756778 + AluY SINE Alu 1 311 0 347 270 33 20 chr21 4151335 4151487 -30756083 - HAL1b LINE L1 -2 1346 1193 198 298 29 67 chr21 4155207 4155311 -30752259 + MER5B DNA MER1_type 61 160 -18 1599 165 41 10 chr21 4155683 4155974 -30751596 - AluSq SINE Alu -13 300 1 343 344 25 8 chr21 4157858 4157980 -30749590 + L2 LINE L2 2931 3054 -218 183 241 37 37 chr21 4159436 4159490 -30748080 + L2 LINE L2 3140 3193 -79 206 214 80 89 chr21 4159513 4159625 -30747945 - L2 LINE L2 -962 2352 2242 302 341 33 0 chr21 4159653 4159744 -30747826 - L2 LINE L2 -2127 1187 1094 240 336 16 0 chr21 4160345 4160467 -30747103 + MIR SINE MIR 16 139 -69 304 258 140 28 chr21 4162567 4162745 -30744825 - L1ME4a LINE L1 -213 5908 5711 238 164 0 98 chr21 4162759 4162820 -30744750 - L1ME4a LINE L1 -437 5684 5630 305 260 0 0 chr21 4162817 4162890 -30744680 - L1ME LINE L1 -437 5684 5612 345 140 0 0 chr21 4163846 4163903 -30743667 + (TA)n Simple_repeat Simple_repeat 1 57 0 2015 144 3 0 chr21 4163903 4164201 -30743369 - AluSx SINE Alu -8 304 6 23 0 0 0 chr21 4165840 4165863 -30741707 + AT_rich Low_complexity Low_complexity 1 23 0 256 328 35 58 chr21 4167061 4167235 -30740335 + MER91A DNA MER1_type 1 170 -26 275 211 18 0 chr21 4167298 4167355 -30740215 + MER91A DNA MER1_type 139 196 0 26 30 0 0 chr21 4168047 4168080 -30739490 + AT_rich Low_complexity Low_complexity 1 33 0 546 176 17 59 chr21 4168566 4168685 -30738885 + MER81 DNA DNA 1 114 0 222 37 0 0 chr21 4169245 4169272 -30738298 + (CA)n Simple_repeat Simple_repeat 1 27 0 346 303 72 5 chr21 4169283 4169491 -30738079 - HAL1 LINE L1 -332 2175 1954 815 277 66 5 chr21 4169498 4169711 -30737859 - HAL1 LINE L1 -577 1930 1705 542 270 158 5 chr21 4170085 4170281 -30737289 + MIR SINE MIR 37 262 0 249 305 0 0 chr21 4171017 4171122 -30736448 + (CA)n Simple_repeat Simple_repeat 2 106 0 21 0 0 0 chr21 4171366 4171387 -30736183 + AT_rich Low_complexity Low_complexity 1 21 0 392 366 69 16 chr21 4171400 4171717 -30735853 - L1 LINE L1 -2386 3760 3427 2113 104 0 0 chr21 4171881 4172188 -30735382 - AluSg SINE Alu 0 307 1 705 249 113 17 chr21 4173458 4173799 -30733771 - L1ME3A LINE L1 -60 6110 5745 2636 36 0 0 chr21 4174209 4174515 -30733055 - AluY SINE Alu -5 306 1 274 330 64 1 chr21 4174788 4174982 -30732588 + MIR SINE MIR 12 244 -18 633 309 105 38 chr21 4175979 4176525 -30731045 - L1M4 LINE L1 -1549 4597 4019 27 29 0 0 chr21 4176865 4176899 -30730671 + AT_rich Low_complexity Low_complexity 1 34 0 2376 65 0 10 chr21 4176932 4177239 -30730331 - AluY SINE Alu -7 304 1 252 59 0 0 chr21 4177703 4177737 -30729833 + (TA)n Simple_repeat Simple_repeat 2 35 0 1095 123 12 0 chr21 4177737 4177899 -30729671 - AluSg/x SINE Alu -15 295 132 2100 117 0 7 chr21 4177899 4178199 -30729371 - AluSx SINE Alu -14 298 1 370 296 49 14 chr21 4178270 4178412 -30729158 - L1M4 LINE L1 -3245 2901 2755 215 111 0 22 chr21 4178675 4178720 -30728850 + (TA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr21 4178720 4178740 -30728830 + (GA)n Simple_repeat Simple_repeat 2 21 0 1405 151 22 4 chr21 4179959 4180191 -30727379 + MER46A DNA MER2_type 1 236 0 22 35 0 0 chr21 4180734 4180763 -30726807 + AT_rich Low_complexity Low_complexity 1 29 0 2028 91 4 7 chr21 4181500 4181776 -30725794 + AluSg SINE Alu 1 275 -35 198 0 0 0 chr21 4181776 4181798 -30725772 + (T)n Simple_repeat Simple_repeat 1 22 0 914 209 47 19 chr21 4182463 4182674 -30724896 - MER20 DNA MER1_type -2 217 1 225 300 0 0 chr21 4183939 4183999 -30723571 + (TA)n Simple_repeat Simple_repeat 2 61 0 837 235 11 5 chr21 4184440 4184627 -30722943 - MIR SINE MIR -3 259 72 771 308 40 17 chr21 4185431 4185782 -30721788 + L1M4 LINE L1 4315 4673 -1473 919 215 105 0 chr21 4186352 4186552 -30721018 + MER58A DNA MER1_type 1 221 -3 1529 197 7 17 chr21 4186709 4187009 -30720561 + AluJo SINE Alu 3 299 -13 354 212 0 0 chr21 4187995 4188075 -30719495 - L1MC2 LINE L1 -11 6333 6254 21 57 0 0 chr21 4188328 4188363 -30719207 + AT_rich Low_complexity Low_complexity 1 35 0 605 205 70 19 chr21 4188675 4188831 -30718739 - MER3 DNA MER1_type -44 165 2 282 301 43 11 chr21 4189179 4189272 -30718298 - MIR SINE MIR -69 139 44 1179 82 0 6 chr21 4189596 4189754 -30717816 + AluSg/x SINE Alu 143 299 -11 234 0 0 0 chr21 4189759 4189785 -30717785 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr21 4190510 4190531 -30717039 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 4190644 4190672 -30716898 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr21 4190720 4190748 -30716822 + AT_rich Low_complexity Low_complexity 1 28 0 1444 196 0 35 chr21 4190849 4191165 -30716405 - AluJb SINE Alu -7 305 1 2024 98 31 0 chr21 4191250 4191537 -30716033 - AluSp SINE Alu -17 296 1 1870 129 0 50 chr21 4192634 4192936 -30714634 + AluSc SINE Alu 6 292 -17 217 333 77 13 chr21 4193202 4193280 -30714290 - L2 LINE L2 -51 3221 3139 1998 124 49 35 chr21 4194124 4194494 -30713076 - THE1C LTR MaLR 0 375 1 992 245 37 0 chr21 4194747 4194963 -30712607 + MER58A DNA MER1_type 1 224 0 203 309 111 0 chr21 4194964 4195045 -30712525 + L2 LINE L2 3190 3279 -34 25 51 0 0 chr21 4195815 4195854 -30711716 + AT_rich Low_complexity Low_complexity 1 39 0 231 188 0 0 chr21 4197056 4197104 -30710466 + (TA)n Simple_repeat Simple_repeat 2 49 0 11812 167 31 16 chr21 4198106 4199611 -30707959 - L1PA11 LINE L1 0 6174 4693 189 74 0 0 chr21 4199611 4199638 -30707932 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 11812 167 31 16 chr21 4199638 4201052 -30706518 - L1PA11 LINE L1 -1481 4693 3209 2232 74 0 44 chr21 4201052 4201350 -30706220 + AluY SINE Alu 12 296 -15 11812 167 31 16 chr21 4201350 4201615 -30705955 - L1PA11 LINE L1 -2965 3209 2949 640 230 84 28 chr21 4201911 4202089 -30705481 + MER5A DNA MER1_type 2 189 0 22 0 0 0 chr21 4202211 4202233 -30705337 + AT_rich Low_complexity Low_complexity 1 22 0 1651 171 41 69 chr21 4202487 4202879 -30704691 - MLT1B LTR MaLR 0 390 10 1578 210 0 0 chr21 4204065 4204360 -30703210 - AluJb SINE Alu -17 295 1 1048 259 13 13 chr21 4204715 4204954 -30702616 + MIR SINE MIR 13 251 -11 266 268 116 36 chr21 4205554 4205666 -30701904 + L2 LINE L2 3124 3244 -28 691 216 27 0 chr21 4205732 4205880 -30701690 - MER3 DNA MER1_type -57 152 1 686 248 91 5 chr21 4206364 4206574 -30700996 - LTR50 LTR ERVL -567 228 1 219 272 148 25 chr21 4206799 4206880 -30700690 - L2 LINE L2 -1 3312 3222 429 20 0 0 chr21 4209105 4209155 -30698415 + (CA)n Simple_repeat Simple_repeat 1 50 0 297 0 0 0 chr21 4209644 4209677 -30697893 + (A)n Simple_repeat Simple_repeat 1 33 0 888 262 134 30 chr21 4209677 4210169 -30697401 + L1ME3 LINE L1 5352 5894 -268 300 310 92 63 chr21 4210387 4210626 -30696944 - L2 LINE L2 -1020 2294 2049 221 277 62 0 chr21 4210715 4210780 -30696790 - L2 LINE L2 -1416 1898 1830 379 361 39 0 chr21 4211397 4211527 -30696043 + L1MEd LINE L1 577 711 -5494 23 33 0 0 chr21 4211559 4211589 -30695981 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr21 4211632 4211653 -30695917 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr21 4212514 4212538 -30695032 + AT_rich Low_complexity Low_complexity 1 24 0 281 190 0 35 chr21 4213079 4213137 -30694433 + U6 snRNA snRNA 52 107 0 13594 150 39 26 chr21 4213450 4216902 -30690668 + L1MA2 LINE L1 342 3747 -3976 1407 121 19 0 chr21 4216902 4217117 -30690453 - L1PA14 LINE L1 -9 6152 5934 13594 150 39 26 chr21 4217117 4220535 -30687035 + L1MA2 LINE L1 3747 7723 0 690 309 88 67 chr21 4220733 4221110 -30686460 + L1MEd LINE L1 940 1199 -5018 2589 42 0 3 chr21 4221110 4221416 -30686154 + AluY SINE Alu 7 311 0 690 309 88 67 chr21 4221416 4221883 -30685687 + L1MEd LINE L1 1199 1655 -4562 1540 267 39 15 chr21 4221900 4222312 -30685258 + L1M4 LINE L1 16 437 -6105 1943 173 18 23 chr21 4222320 4222708 -30684862 + MER50 LTR ERV1 349 734 0 355 272 32 16 chr21 4222985 4223110 -30684460 + L1M4 LINE L1 562 688 -5854 625 330 95 46 chr21 4223234 4223625 -30683945 - L1ME LINE L1 -5651 419 10 697 222 0 0 chr21 4223791 4223926 -30683644 + FLAM_C SINE Alu 3 137 -6 1609 153 0 58 chr21 4224520 4224833 -30682737 - AluJb SINE Alu -17 295 1 308 280 45 8 chr21 4224956 4225088 -30682482 - HAL1 LINE L1 -863 1644 1508 691 182 0 8 chr21 4225124 4225245 -30682325 - AluSc SINE Alu -65 244 125 2927 213 46 26 chr21 4225332 4225716 -30681854 - MER44D DNA MER2_type -1882 605 327 2234 53 40 30 chr21 4225716 4226016 -30681554 - AluY SINE Alu -8 303 1 2927 213 46 26 chr21 4226016 4226349 -30681221 - MER44D DNA MER2_type -2160 327 2 717 144 25 0 chr21 4226474 4226592 -30680978 + MER65B LTR ERV1 7 127 -404 3960 187 84 32 chr21 4226656 4227726 -30679844 + MER4-int LTR ERV1 1369 2494 -2377 1109 206 62 87 chr21 4227802 4228574 -30678996 + MER4-int LTR ERV1 1516 2435 -4323 2173 121 13 0 chr21 4228577 4228883 -30678687 - AluSq SINE Alu -3 310 1 17894 76 8 3 chr21 4229013 4232263 -30675307 - L1PA6 LINE L1 -1 6153 2896 207 0 0 0 chr21 4232327 4232350 -30675220 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 31966 36 1 1 chr21 4232352 4238506 -30669064 - L1PA3 LINE L1 -3 6152 1 7814 81 0 2 chr21 4238509 4239580 -30667990 - L1PA6 LINE L1 -3219 2927 1859 774 203 54 93 chr21 4239715 4240436 -30667134 + MER4-int LTR ERV1 3767 4481 -1850 530 157 43 71 chr21 4240436 4240576 -30666994 + MER65A LTR ERV1 310 445 0 396 247 19 78 chr21 4240636 4240790 -30666780 - MLT1I LTR MaLR -200 209 65 1377 248 70 13 chr21 4240931 4241406 -30666164 + MLT1D LTR MaLR 1 502 -3 24 77 0 0 chr21 4242175 4242227 -30665343 + AT_rich Low_complexity Low_complexity 1 52 0 2067 110 138 46 chr21 4242285 4242313 -30665257 + MSTA LTR MaLR 1 25 -403 2165 114 47 42 chr21 4242313 4242674 -30664896 - THE1B LTR MaLR 0 364 2 11400 109 4 0 chr21 4242675 4244249 -30663321 - THE1B-int LTR MaLR 0 1580 1 2118 130 54 23 chr21 4244249 4244602 -30662968 - THE1B LTR MaLR 0 364 1 2067 110 138 46 chr21 4244602 4244962 -30662608 + MSTA LTR MaLR 24 428 0 601 282 32 62 chr21 4245611 4245951 -30661619 - LTR41 LTR ERVL -7 766 437 616 228 28 17 chr21 4246114 4246294 -30661276 - LTR41 LTR ERVL -586 187 6 21 0 0 0 chr21 4247936 4247957 -30659613 + AT_rich Low_complexity Low_complexity 1 21 0 1923 159 3 3 chr21 4248828 4249124 -30658446 - AluSx SINE Alu -16 296 1 3566 237 70 35 chr21 4249256 4250379 -30657191 - L1MDa LINE L1 -5347 1193 32 3079 71 10 2 chr21 4250644 4251254 -30656316 + PABL_A LTR ERV1 1 660 0 2328 78 0 26 chr21 4251561 4251870 -30655700 - AluSc SINE Alu -8 301 1 2244 122 0 0 chr21 4251923 4252227 -30655343 + AluSx SINE Alu 1 304 -8 195 323 16 0 chr21 4252991 4253053 -30654517 + L2 LINE L2 3251 3313 0 664 282 133 25 chr21 4253695 4254056 -30653514 - MLT1J2 LTR MaLR -34 416 17 438 294 8 0 chr21 4254836 4254962 -30652608 + MIR SINE MIR 75 201 -61 21 0 0 0 chr21 4255030 4255051 -30652519 + AT_rich Low_complexity Low_complexity 1 21 0 753 240 35 30 chr21 4255107 4255307 -30652263 - L1ME1 LINE L1 -63 6172 5972 724 234 51 6 chr21 4255350 4255664 -30651906 - L1ME1 LINE L1 -697 5534 5212 502 292 7 0 chr21 4255665 4255809 -30651761 - L1ME1 LINE L1 -1127 5088 4944 2035 154 46 31 chr21 4255812 4256357 -30651213 - MLT2A2 LTR ERVL 0 554 1 725 264 58 29 chr21 4256417 4256799 -30650771 - L1ME1 LINE L1 -1347 4868 4476 950 237 30 39 chr21 4256799 4256866 -30650704 - L1ME1 LINE L1 -4488 1908 1842 2901 176 21 5 chr21 4256866 4257239 -30650331 - L1MB2 LINE L1 -3 6168 5778 1056 137 0 0 chr21 4257239 4257468 -30650102 + (TA)n Simple_repeat Simple_repeat 1 229 0 2901 176 21 5 chr21 4257468 4257648 -30649922 - L1MB2 LINE L1 -393 5778 5602 950 237 30 39 chr21 4257648 4257917 -30649653 - L1ME1 LINE L1 -4554 1842 1575 468 288 61 82 chr21 4258055 4258447 -30649123 - MLT1J2-int LTR MaLR -6 1365 982 327 287 88 7 chr21 4258921 4259057 -30648513 - MLT1J2-int LTR MaLR -760 611 465 6539 211 49 8 chr21 4259864 4261381 -30646189 - Cheshire DNA MER1_type 0 2420 841 279 170 57 0 chr21 4261386 4261439 -30646131 - Cheshire DNA MER1_type -2321 99 44 5236 124 30 6 chr21 4262333 4263266 -30644304 - L1PB1 LINE L1 -3 6148 5232 34 24 0 0 chr21 4263340 4263381 -30644189 + AT_rich Low_complexity Low_complexity 1 41 0 286 241 142 50 chr21 4263439 4263580 -30643990 + MIR SINE MIR 78 231 -31 267 209 15 0 chr21 4265140 4265207 -30642363 + (TTTG)n Simple_repeat Simple_repeat 2 69 0 1484 213 47 14 chr21 4266955 4267393 -30640177 - L1MC/D LINE L1 -718 5641 5191 2707 107 0 3 chr21 4267442 4267833 -30639737 - L1PA13 LINE L1 -1 6162 5773 18856 91 8 14 chr21 4267838 4270609 -30636961 - L1PA13 LINE L1 -914 5232 2479 2211 146 4 16 chr21 4270597 4271151 -30636419 - L1P4 LINE L1 -678 6923 6373 4443 181 11 10 chr21 4271149 4272031 -30635539 - L1P4 LINE L1 -3595 3989 3107 3472 173 16 9 chr21 4272039 4272618 -30634952 - L1P4 LINE L1 -6986 595 13 1412 218 54 40 chr21 4272701 4273086 -30634484 - L1MC/D LINE L1 -1098 5048 4653 1874 170 10 0 chr21 4273086 4273380 -30634190 - AluSx SINE Alu -15 297 1 1412 218 54 40 chr21 4273380 4273472 -30634098 - L1MC/D LINE L1 -1493 4653 4564 3908 208 38 14 chr21 4273493 4273878 -30633692 - L1MB7 LINE L1 0 6184 5810 3011 88 44 14 chr21 4273878 4274266 -30633304 + MLT2A1 LTR ERVL 1 405 -39 180 0 0 0 chr21 4274266 4274286 -30633284 + (TA)n Simple_repeat Simple_repeat 2 21 0 3011 88 44 14 chr21 4274286 4274328 -30633242 + MLT2A1 LTR ERVL 405 444 0 3908 208 38 14 chr21 4274328 4275561 -30632009 - L1MB7 LINE L1 -374 5810 4528 742 238 9 15 chr21 4275548 4275974 -30631596 + L1ME1 LINE L1 4841 5390 -788 568 226 99 63 chr21 4276035 4276256 -30631314 - MER34B LTR ERV1 -312 253 25 1264 234 75 18 chr21 4276264 4276653 -30630917 + L1ME1 LINE L1 5691 6101 -65 285 51 0 0 chr21 4276768 4276807 -30630763 + (TC)n Simple_repeat Simple_repeat 2 40 0 321 26 0 0 chr21 4277125 4277163 -30630407 + (CA)n Simple_repeat Simple_repeat 2 39 0 378 0 0 0 chr21 4277165 4277207 -30630363 + (TA)n Simple_repeat Simple_repeat 2 43 0 261 238 0 0 chr21 4277976 4278039 -30629531 + (ATG)n Simple_repeat Simple_repeat 2 64 0 23 0 0 0 chr21 4278362 4278385 -30629185 + AT_rich Low_complexity Low_complexity 1 23 0 2601 39 0 3 chr21 4278621 4278931 -30628639 - AluY SINE Alu -2 309 1 366 173 82 36 chr21 4279662 4279772 -30627798 - L1ME4a LINE L1 -11 6110 5996 2477 76 0 3 chr21 4280625 4280928 -30626642 + AluSq SINE Alu 1 302 -11 1148 102 28 0 chr21 4281211 4281387 -30626183 - L1MA3 LINE L1 0 6305 6125 268 261 239 0 chr21 4281577 4281669 -30625901 - MER5B DNA MER1_type -63 115 2 297 285 98 0 chr21 4283328 4283451 -30624119 - L2 LINE L2 -33 3280 3146 280 358 14 39 chr21 4283507 4283714 -30623856 - L2 LINE L2 -167 3146 2945 1667 225 59 53 chr21 4284100 4284612 -30622958 - MLT1E2 LTR MaLR 0 626 112 2410 206 13 11 chr21 4284622 4285092 -30622478 + MER21B LTR ERV1 1 471 -392 24 32 0 0 chr21 4285097 4285128 -30622442 + AT_rich Low_complexity Low_complexity 1 31 0 1342 194 96 50 chr21 4285153 4285530 -30622040 + MER21B LTR ERV1 454 847 -16 254 132 0 75 chr21 4285597 4285650 -30621920 - MLT1E2 LTR MaLR -605 49 1 270 0 0 0 chr21 4285686 4285716 -30621854 + (T)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr21 4286430 4286452 -30621118 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 4287688 4287709 -30619861 + (CAT)n Simple_repeat Simple_repeat 2 22 0 204 308 77 48 chr21 4287877 4287981 -30619589 - L2 LINE L2 -2919 395 289 2799 81 74 12 chr21 4288564 4288939 -30618631 + MLT2A1 LTR ERVL 1 406 -38 520 26 0 26 chr21 4288939 4289015 -30618555 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 2799 81 74 12 chr21 4289015 4289057 -30618513 + MLT2A1 LTR ERVL 406 444 0 21 36 0 0 chr21 4289912 4289940 -30617630 + AT_rich Low_complexity Low_complexity 1 28 0 1971 76 0 0 chr21 4290675 4290926 -30616644 - AluY SINE Alu -11 300 50 27 29 0 0 chr21 4291176 4291210 -30616360 + AT_rich Low_complexity Low_complexity 1 34 0 2104 97 10 30 chr21 4292320 4292662 -30614908 + AluSg SINE Alu 1 336 0 566 253 18 62 chr21 4294501 4294726 -30612844 - MER58C DNA MER1_type 0 215 1 3021 99 2 20 chr21 4297389 4297845 -30609725 - LTR7 LTR ERV1 -2 448 1 2275 113 51 3 chr21 4297845 4298217 -30609353 - HERVH LTR ERV1 0 7713 7324 1492 111 0 22 chr21 4298217 4298442 -30609128 - HERVH LTR ERV1 -1894 5819 5600 3090 131 2 2 chr21 4298443 4299057 -30608513 - HERVH LTR ERV1 -2564 5149 4488 5715 105 9 3 chr21 4299059 4299908 -30607662 - HERVH LTR ERV1 -3720 3993 3140 15303 96 9 24 chr21 4299894 4302681 -30604889 - HERVH LTR ERV1 -4721 2992 1 2998 101 2 22 chr21 4302683 4303140 -30604430 - LTR7 LTR ERV1 -2 448 1 197 389 19 9 chr21 4303418 4303526 -30604044 + MIR3 SINE MIR 13 121 -87 783 207 50 6 chr21 4304747 4304926 -30602644 - L1MB5 LINE L1 -8 6166 5980 21 0 0 0 chr21 4305315 4305336 -30602234 + AT_rich Low_complexity Low_complexity 1 21 0 245 106 0 21 chr21 4305523 4305570 -30602000 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 192 319 21 64 chr21 4305738 4305832 -30601738 - MIR SINE MIR -153 109 20 326 295 74 8 chr21 4305840 4305962 -30601608 + MIR3 SINE MIR 66 195 -13 22 35 0 0 chr21 4308268 4308297 -30599273 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 4308503 4308529 -30599041 + AT_rich Low_complexity Low_complexity 1 26 0 280 274 54 2 chr21 4309161 4309270 -30598300 + MIR SINE MIR 33 146 -62 284 92 0 0 chr21 4309442 4309484 -30598086 - MLT2C2 LTR ERVL 0 464 373 313 250 23 8 chr21 4309510 4309642 -30597928 + (TATAA)n Simple_repeat Simple_repeat 5 138 0 272 123 39 50 chr21 4309642 4309821 -30597749 + (TA)n Simple_repeat Simple_repeat 1 177 0 1465 247 52 46 chr21 4309881 4310362 -30597208 - MLT2B1 LTR ERVL -35 485 2 2350 93 0 10 chr21 4311035 4311347 -30596223 - AluSp SINE Alu -4 309 1 1414 201 105 85 chr21 4311619 4312326 -30595244 + MER69 DNA AcHobo 1466 2186 -340 390 195 42 100 chr21 4312320 4312447 -30595123 + MER69 DNA AcHobo 2337 2451 -75 2636 48 0 3 chr21 4312447 4312759 -30594811 - AluY SINE Alu 0 311 1 390 195 42 100 chr21 4312759 4312821 -30594749 + MER69 DNA AcHobo 2451 2515 -11 194 318 0 68 chr21 4312912 4313000 -30594570 + L2 LINE L2 3191 3272 0 181 222 0 93 chr21 4314276 4314330 -30593240 - L2 LINE L2 0 3313 3265 266 196 20 0 chr21 4314487 4314538 -30593032 - MIR3 SINE MIR -6 202 151 444 204 29 109 chr21 4314601 4314690 -30592880 - L2 LINE L2 0 3313 3237 2549 53 0 0 chr21 4314690 4314993 -30592577 + AluY SINE Alu 1 303 -8 444 204 29 109 chr21 4314993 4315040 -30592530 - L2 LINE L2 -76 3237 3188 23 0 0 0 chr21 4316785 4316808 -30590762 + AT_rich Low_complexity Low_complexity 1 23 0 2279 115 11 11 chr21 4319110 4319467 -30588103 + L1PA10 LINE L1 5812 6168 0 437 312 49 39 chr21 4319994 4320199 -30587371 + L1MEc LINE L1 1531 1737 -4659 2095 110 3 3 chr21 4320405 4320696 -30586874 + AluSq SINE Alu 1 291 -22 707 310 66 17 chr21 4321665 4321952 -30585618 - MLT1I LTR MaLR -49 360 60 3094 156 66 9 chr21 4322147 4322522 -30585048 - MER6A DNA MER2_type -260 605 184 204 40 0 0 chr21 4322522 4322547 -30585023 + (CA)n Simple_repeat Simple_repeat 2 26 0 3094 156 66 9 chr21 4322547 4322743 -30584827 - MER6A DNA MER2_type -681 184 1 2609 43 0 0 chr21 4322789 4323093 -30584477 - AluY SINE Alu -7 304 1 26 74 0 0 chr21 4324316 4324370 -30583200 + AT_rich Low_complexity Low_complexity 1 54 0 651 228 20 13 chr21 4324413 4324562 -30583008 + MER58B DNA MER1_type 191 340 -1 420 318 40 0 chr21 4324565 4324741 -30582829 + MIR SINE MIR 77 259 -3 237 33 0 0 chr21 4325508 4325538 -30582032 + (CA)n Simple_repeat Simple_repeat 1 30 0 359 277 77 51 chr21 4325716 4325990 -30581580 + L1ME LINE L1 5542 5822 -299 261 0 0 0 chr21 4326094 4326123 -30581447 + (CA)n Simple_repeat Simple_repeat 2 30 0 481 168 38 0 chr21 4326903 4327121 -30580449 + (TA)n Simple_repeat Simple_repeat 1 226 0 300 256 48 40 chr21 4327248 4327373 -30580197 - L1ME LINE L1 -685 5436 5311 789 274 14 46 chr21 4327377 4327596 -30579974 + MER58A DNA MER1_type 2 213 -11 417 291 60 20 chr21 4328443 4328594 -30578976 + MLT1I LTR MaLR 253 409 0 432 0 0 0 chr21 4329604 4329652 -30577918 + (TG)n Simple_repeat Simple_repeat 2 49 0 2217 120 0 0 chr21 4330464 4330764 -30576806 - AluSq SINE Alu -13 300 1 1575 172 11 11 chr21 4332153 4332420 -30575150 + Tigger7 DNA MER2_type 1 267 -2220 528 216 0 0 chr21 4332419 4332516 -30575054 + Tigger7 DNA MER2_type 2391 2487 0 9238 35 3 0 chr21 4332561 4334453 -30573117 - L1PA4 LINE L1 0 6155 4259 21 57 0 0 chr21 4335089 4335124 -30572446 + AT_rich Low_complexity Low_complexity 1 35 0 525 268 68 54 chr21 4335656 4335861 -30571709 - MIR SINE MIR -9 253 46 196 275 55 55 chr21 4335869 4335978 -30571592 + MIR SINE MIR 99 207 -55 275 276 40 0 chr21 4336260 4336336 -30571234 + L1ME LINE L1 5566 5644 -477 794 150 52 40 chr21 4336508 4336681 -30570889 + L1PA14 LINE L1 5985 6159 -2 1771 191 8 40 chr21 4337216 4337435 -30570135 - MLT1A1 LTR MaLR 0 365 161 1962 123 0 0 chr21 4337435 4337704 -30569866 - AluSc SINE Alu -1 308 40 1771 191 8 40 chr21 4337704 4337861 -30569709 - MLT1A1 LTR MaLR -204 161 1 334 298 56 45 chr21 4340524 4340722 -30566848 + L2 LINE L2 1917 2116 -1198 2362 102 0 0 chr21 4341847 4342150 -30565420 + AluSx SINE Alu 1 303 -9 266 143 0 0 chr21 4343277 4343319 -30564251 - MLT1D LTR MaLR 0 505 464 2445 62 0 3 chr21 4344109 4344413 -30563157 - AluY SINE Alu -8 303 1 2462 57 0 0 chr21 4344880 4345179 -30562391 + AluY SINE Alu 1 299 -12 608 238 69 6 chr21 4345600 4345760 -30561810 + MLT1H LTR MaLR 1 170 -379 1776 166 0 11 chr21 4345767 4346050 -30561520 + AluJo SINE Alu 10 289 -23 252 292 14 14 chr21 4346068 4346140 -30561430 + MLT1H LTR MaLR 121 192 -363 252 175 127 0 chr21 4346295 4346358 -30561212 + MLT1H LTR MaLR 479 549 0 291 273 93 90 chr21 4347338 4347616 -30559954 - MLT1H LTR MaLR -33 516 238 755 184 114 13 chr21 4348465 4348623 -30558947 + FAM SINE Alu 1 174 -1 1558 194 32 0 chr21 4350357 4350640 -30556930 + AluJb SINE Alu 1 292 -20 21 0 0 0 chr21 4352653 4352674 -30554896 + AT_rich Low_complexity Low_complexity 1 21 0 180 360 81 9 chr21 4352989 4353100 -30554470 + L2 LINE L2 3146 3264 -8 428 242 10 0 chr21 4353246 4353345 -30554225 - U6 snRNA snRNA -6 101 2 28 29 0 0 chr21 4353510 4353545 -30554025 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr21 4354052 4354076 -30553494 + AT_rich Low_complexity Low_complexity 1 24 0 1600 153 56 17 chr21 4354353 4354521 -30553049 - AluSx SINE Alu -13 299 114 198 0 0 0 chr21 4354521 4354543 -30553027 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1600 153 56 17 chr21 4354543 4354662 -30552908 - AluSx SINE Alu -198 114 1 1757 175 17 0 chr21 4354665 4354957 -30552613 - AluJb SINE Alu -15 297 1 492 258 88 81 chr21 4355637 4356021 -30551549 - HAL1 LINE L1 -2120 387 1 2454 117 11 16 chr21 4357022 4357399 -30550171 - THE1C LTR MaLR 0 375 1 498 239 23 68 chr21 4358659 4358835 -30548735 + MER21B LTR ERV1 141 308 -555 507 210 52 127 chr21 4358959 4359250 -30548320 + MER21A LTR ERV1 500 768 -163 350 303 42 21 chr21 4360222 4360364 -30547206 + LTR16B LTR ERVL 107 251 -213 25 65 0 0 chr21 4361186 4361232 -30546338 + AT_rich Low_complexity Low_complexity 1 46 0 1460 218 20 83 chr21 4361386 4361933 -30545637 - MLT2B2 LTR ERVL -8 546 29 186 118 0 0 chr21 4363077 4363111 -30544459 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 189 370 10 10 chr21 4363868 4363968 -30543602 + L2 LINE L2 3204 3303 -10 208 308 202 10 chr21 4363980 4364084 -30543486 + MIR3 SINE MIR 71 194 -14 2538 40 0 3 chr21 4364086 4364382 -30543188 + AluY SINE Alu 1 295 -16 1018 192 92 19 chr21 4364967 4365208 -30542362 - MLT1A1 LTR MaLR -104 261 1 353 223 132 18 chr21 4367208 4367374 -30540196 + L1ME LINE L1 5574 5758 -363 1996 138 10 0 chr21 4367568 4368063 -30539507 + L1MA1 LINE L1 5001 5500 -743 5351 87 29 33 chr21 4368870 4369710 -30537860 + L1MA1 LINE L1 5467 6302 0 1040 17 0 0 chr21 4370601 4370720 -30536850 - L1PA3 LINE L1 0 6155 6037 1377 266 59 46 chr21 4371576 4372019 -30535551 - MLT1J LTR MaLR -4 507 56 1697 243 108 0 chr21 4372019 4372475 -30535095 + MLT1D LTR MaLR 1 505 0 1377 266 59 46 chr21 4372475 4372508 -30535062 - MLT1J LTR MaLR -455 56 25 2447 90 0 0 chr21 4372530 4372860 -30534710 - AluSg SINE Alu 0 330 1 2174 193 21 45 chr21 4373471 4373985 -30533585 + MLT1D LTR MaLR 1 502 -3 1101 74 0 0 chr21 4375305 4375440 -30532130 - AluSg/x SINE Alu -19 291 157 991 239 23 42 chr21 4377093 4377473 -30530097 - L1ME3 LINE L1 0 6170 5806 508 313 55 5 chr21 4377492 4377693 -30529877 - L1ME3 LINE L1 -471 5699 5489 7237 179 67 67 chr21 4377693 4379375 -30528195 - MER52A LTR ERV1 0 1755 1 2345 89 0 3 chr21 4379527 4379831 -30527739 - AluY SINE Alu -6 305 3 642 270 83 106 chr21 4380002 4380435 -30527135 - MLT1H LTR MaLR -120 429 7 23 54 0 0 chr21 4380490 4380527 -30527043 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr21 4380741 4380776 -30526794 + AT_rich Low_complexity Low_complexity 1 35 0 617 284 35 0 chr21 4380913 4381145 -30526425 - L1ME3 LINE L1 -1451 4695 4456 434 204 127 23 chr21 4381156 4381376 -30526194 - L1ME3 LINE L1 -1712 4434 4192 398 53 18 0 chr21 4381522 4381579 -30525991 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2026 278 58 25 chr21 4381586 4382855 -30524715 - L1ME3 LINE L1 -2155 3991 2728 440 304 70 9 chr21 4383011 4383353 -30524217 - L1ME3 LINE L1 -3650 2496 2134 512 226 19 82 chr21 4383608 4383767 -30523803 - MLT1E2 LTR MaLR -476 150 2 2148 125 6 3 chr21 4384108 4384419 -30523151 - AluSx SINE Alu 0 312 1 22 0 0 0 chr21 4384449 4384471 -30523099 + AT_rich Low_complexity Low_complexity 1 22 0 281 182 0 15 chr21 4386328 4386394 -30521176 + (TA)n Simple_repeat Simple_repeat 1 65 0 32 0 0 0 chr21 4386896 4386928 -30520642 + AT_rich Low_complexity Low_complexity 1 32 0 229 192 39 0 chr21 4387902 4387954 -30519616 + (TA)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr21 4392799 4392842 -30514728 + AT_rich Low_complexity Low_complexity 1 43 0 561 255 115 13 chr21 4395475 4395632 -30511938 + MIR SINE MIR 13 185 -77 23 0 0 0 chr21 4395724 4395747 -30511823 + AT_rich Low_complexity Low_complexity 1 23 0 269 305 63 0 chr21 4396327 4396422 -30511148 + MIR SINE MIR 111 211 -51 564 200 35 17 chr21 4397897 4398012 -30509558 - L2 LINE L2 -4 3309 3193 28 71 0 0 chr21 4398790 4398846 -30508724 + AT_rich Low_complexity Low_complexity 1 56 0 240 333 0 0 chr21 4400018 4400087 -30507483 + MIR SINE MIR 31 99 -109 2572 108 6 0 chr21 4401305 4401667 -30505903 - THE1B LTR MaLR 0 364 1 388 287 18 30 chr21 4402842 4403006 -30504564 + MLT1J2 LTR MaLR 7 168 -282 22 0 0 0 chr21 4403229 4403251 -30504319 + AT_rich Low_complexity Low_complexity 1 22 0 390 309 0 8 chr21 4403465 4403591 -30503979 - MLT1I LTR MaLR -277 132 8 489 288 27 14 chr21 4404416 4404635 -30502935 - L1MC5 LINE L1 -32 7929 7708 2348 248 58 20 chr21 4405818 4406524 -30501046 - L1ME1 LINE L1 -20 6215 5483 405 256 45 0 chr21 4406521 4406654 -30500916 - L1ME1 LINE L1 -2471 3744 3606 4783 270 58 41 chr21 4406736 4407202 -30500368 - L1M4 LINE L1 -818 5328 4872 1739 131 0 15 chr21 4407202 4407462 -30500108 + AluSx SINE Alu 40 295 -17 4783 270 58 41 chr21 4407462 4409403 -30498167 - L1M4 LINE L1 -1274 4872 2879 2220 55 0 0 chr21 4409455 4409751 -30497819 - AluY SINE Alu 0 305 10 290 135 77 0 chr21 4409766 4409818 -30497752 - L1M4 LINE L1 -3347 2799 2744 350 218 99 0 chr21 4410048 4410149 -30497421 - L1MA9 LINE L1 -22 6290 6180 589 258 46 0 chr21 4410199 4410416 -30497154 - L1M4 LINE L1 -3760 2386 2160 30 45 0 0 chr21 4410537 4410581 -30496989 + AT_rich Low_complexity Low_complexity 1 44 0 1376 285 62 30 chr21 4410834 4411556 -30496014 - L1ME1 LINE L1 -4579 1817 1073 1128 181 28 14 chr21 4411559 4411775 -30495795 - AluSx SINE Alu -76 236 18 1920 138 0 3 chr21 4411807 4412113 -30495457 - AluSx SINE Alu 0 305 1 2357 167 26 72 chr21 4413425 4413463 -30494107 - MLT2B2 LTR ERVL 0 515 477 497 68 14 0 chr21 4413463 4413537 -30494033 + (TAGA)n Simple_repeat Simple_repeat 2 76 0 2263 99 0 0 chr21 4413547 4413841 -30493729 + AluSg SINE Alu 1 294 -16 2357 167 26 72 chr21 4413841 4414330 -30493240 - MLT2B2 LTR ERVL -47 468 2 370 239 45 97 chr21 4414523 4414657 -30492913 - MIR3 SINE MIR -74 134 8 318 26 0 0 chr21 4415430 4415469 -30492101 + (TG)n Simple_repeat Simple_repeat 2 40 0 317 382 88 8 chr21 4415482 4415720 -30491850 + L2 LINE L2 2499 2755 -559 260 169 34 0 chr21 4415858 4415917 -30491653 + MER112 DNA MER1_type 67 127 -133 1096 136 124 33 chr21 4417584 4417891 -30489679 - L1M2 LINE L1 -748 5398 5202 9173 192 21 10 chr21 4417883 4419880 -30487690 - L1M2 LINE L1 -1417 4729 2710 310 234 199 55 chr21 4420509 4420710 -30486860 - L2 LINE L2 -82 3231 3002 3434 163 77 58 chr21 4421987 4422207 -30485363 - L1M LINE L1 -783 5363 5149 2443 28 0 7 chr21 4422207 4422522 -30485048 - AluY SINE Alu 0 313 1 3434 163 77 58 chr21 4422522 4422913 -30484657 - L1M LINE L1 -997 5149 4763 2239 110 7 0 chr21 4422913 4423221 -30484349 - AluSx SINE Alu 0 312 3 3434 163 77 58 chr21 4423221 4423463 -30484107 - L1M LINE L1 -1383 4763 4527 883 188 6 0 chr21 4423466 4423647 -30483923 + L1 LINE L1 4172 4353 -1793 26 50 0 0 chr21 4423750 4423790 -30483780 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr21 4424171 4424199 -30483371 + AT_rich Low_complexity Low_complexity 1 28 0 1975 187 15 20 chr21 4424631 4425027 -30482543 - MSTD LTR MaLR 0 396 3 725 276 156 16 chr21 4425296 4425876 -30481694 - L2 LINE L2 -4 3309 2635 1490 206 64 18 chr21 4425976 4426306 -30481264 - MER82 DNA MER2_type -107 546 202 928 228 35 0 chr21 4426797 4426994 -30480576 - MER82 DNA MER2_type -449 204 1 1705 150 53 71 chr21 4427024 4427417 -30480153 + MLT1B LTR MaLR 1 386 -4 288 324 18 0 chr21 4427468 4427579 -30479991 - L2 LINE L2 -735 2579 2467 25 0 0 0 chr21 4427819 4427844 -30479726 + AT_rich Low_complexity Low_complexity 1 25 0 22 35 0 0 chr21 4428882 4428911 -30478659 + AT_rich Low_complexity Low_complexity 1 29 0 349 340 5 65 chr21 4429108 4429323 -30478247 - MIR SINE MIR -55 207 6 22 70 0 0 chr21 4431791 4431834 -30475736 + AT_rich Low_complexity Low_complexity 1 43 0 1152 158 32 45 chr21 4431839 4431877 -30475693 + AluJo SINE Alu 3 40 -272 2067 113 76 48 chr21 4431877 4432065 -30475505 - THE1B LTR MaLR 0 364 183 1969 86 16 0 chr21 4432065 4432322 -30475248 - AluY SINE Alu -14 297 37 2067 113 76 48 chr21 4432322 4432487 -30475083 - THE1B LTR MaLR -181 183 1 1152 158 32 45 chr21 4432487 4432669 -30474901 + AluJo SINE Alu 40 220 -92 1474 124 0 5 chr21 4432799 4433009 -30474561 + AluSg/x SINE Alu 97 305 -5 328 352 79 14 chr21 4433013 4433229 -30474341 + L1M4c LINE L1 1026 1255 -5129 611 203 8 0 chr21 4433599 4433722 -30473848 - MER3 DNA MER1_type 0 209 86 445 333 65 53 chr21 4433909 4434230 -30473340 - HAL1 LINE L1 -1745 762 438 499 295 50 75 chr21 4434268 4434546 -30473024 - HAL1 LINE L1 -2132 375 105 689 263 59 59 chr21 4434906 4435161 -30472409 + MIR SINE MIR 6 260 -2 26 0 0 0 chr21 4436315 4436341 -30471229 + AT_rich Low_complexity Low_complexity 1 26 0 581 297 98 14 chr21 4437268 4437685 -30469885 - L1M4 LINE L1 -1219 4927 4476 413 309 47 7 chr21 4437774 4437923 -30469647 - L1M4 LINE L1 -1796 4350 4196 764 278 30 36 chr21 4438159 4438561 -30469009 - L1P4 LINE L1 -669 5492 5080 2157 102 6 10 chr21 4438561 4438874 -30468696 - AluSx SINE Alu 0 312 1 764 278 30 36 chr21 4438874 4439025 -30468545 - L1P4 LINE L1 -1081 5080 4930 257 120 40 0 chr21 4439025 4439075 -30468495 + (TA)n Simple_repeat Simple_repeat 1 52 0 729 179 6 48 chr21 4439610 4439778 -30467792 - L1PA15 LINE L1 0 6165 6005 375 178 14 14 chr21 4439969 4440042 -30467528 - Tigger2 DNA MER2_type -2645 73 1 723 274 84 65 chr21 4440253 4440976 -30466594 - L1MEd LINE L1 -4814 1315 580 23 33 0 0 chr21 4444479 4444509 -30463061 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 4444939 4444961 -30462609 + AT_rich Low_complexity Low_complexity 1 22 0 6664 79 0 5 chr21 4445320 4446482 -30461088 - L1PA7 LINE L1 0 6469 5307 25287 122 11 12 chr21 4446482 4451479 -30456091 - L1PA7 LINE L1 -1441 5020 8 22 0 0 0 chr21 4451891 4451913 -30455657 + AT_rich Low_complexity Low_complexity 1 22 0 231 253 114 38 chr21 4453249 4453328 -30454242 - MIR SINE MIR -61 147 63 3416 140 15 2 chr21 4453705 4454225 -30453345 + MER1A DNA MER1_type 1 527 0 316 267 0 12 chr21 4454339 4454425 -30453145 + MIR SINE MIR 173 257 -5 817 121 0 0 chr21 4456108 4456232 -30451338 + MER2 DNA MER2_type 67 190 -154 6052 155 89 6 chr21 4456232 4457076 -30450494 + Tigger3b DNA MER2_type 1 965 -2063 2051 148 44 101 chr21 4457076 4457530 -30450040 - MSTA LTR MaLR 0 428 1 6052 155 89 6 chr21 4457530 4457822 -30449748 + Tigger3b DNA MER2_type 965 1231 0 713 251 103 0 chr21 4457996 4458199 -30449371 - MER58A DNA MER1_type 0 224 1 415 299 45 6 chr21 4458613 4458770 -30448800 + L2 LINE L2 2420 2582 -732 3908 113 41 2 chr21 4459236 4459840 -30447730 - L1PA13 LINE L1 -2 6812 6185 2026 109 0 0 chr21 4459854 4460120 -30447450 - AluSc SINE Alu -8 301 36 14731 180 14 11 chr21 4460120 4463055 -30444515 - L1PA13 LINE L1 -749 6048 3104 2049 216 5 8 chr21 4463045 4463444 -30444126 - L1PA13 LINE L1 -5123 1664 1267 3954 199 24 8 chr21 4463864 4464588 -30442982 - L1PA13 LINE L1 -6049 738 4 12853 138 17 5 chr21 4464605 4466630 -30440940 + Tigger1 DNA MER2_type 103 2150 -268 1487 170 8 0 chr21 4466777 4467036 -30440534 + Tigger1 DNA MER2_type 2158 2418 0 21 0 0 0 chr21 4467251 4467272 -30440298 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 4467526 4467564 -30440006 + AT_rich Low_complexity Low_complexity 1 38 0 2870 6 0 0 chr21 4467742 4468053 -30439517 - AluYa5 SINE Alu 0 311 1 200 204 0 45 chr21 4468227 4468271 -30439299 + L2 LINE L2 3211 3252 -20 18133 29 1 1 chr21 4468312 4471249 -30436321 - L1PA3 LINE L1 -3 6152 3214 208 288 15 30 chr21 4471319 4471385 -30436185 + L2 LINE L2 3196 3260 -12 223 274 0 0 chr21 4471387 4471449 -30436121 + T-rich Low_complexity Low_complexity 1 62 0 23 0 0 0 chr21 4472049 4472072 -30435498 + AT_rich Low_complexity Low_complexity 1 23 0 338 0 24 0 chr21 4472779 4472821 -30434749 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 540 202 12 89 chr21 4473636 4473700 -30433870 + MIR SINE MIR 106 173 -89 2038 128 7 3 chr21 4473700 4473997 -30433573 - AluSx SINE Alu -14 298 1 540 202 12 89 chr21 4473997 4474100 -30433470 + MIR SINE MIR 173 260 -2 1668 144 27 33 chr21 4474318 4474617 -30432953 + AluJb SINE Alu 1 297 -15 620 307 9 42 chr21 4474940 4475155 -30432415 + MIR SINE MIR 49 256 -6 2071 135 0 0 chr21 4475509 4475806 -30431764 - AluSg SINE Alu -13 297 1 716 236 33 6 chr21 4476692 4476874 -30430696 + MER5A DNA MER1_type 1 187 -2 22 0 0 0 chr21 4478174 4478196 -30429374 + AT_rich Low_complexity Low_complexity 1 22 0 1779 167 7 0 chr21 4478200 4478499 -30429071 + AluSx SINE Alu 1 301 -11 945 140 11 6 chr21 4478527 4478706 -30428864 + CT-rich Low_complexity Low_complexity 1 180 0 1517 153 68 82 chr21 4478745 4479014 -30428556 - MER46B DNA MER2_type -2496 235 96 1913 58 0 0 chr21 4479014 4479254 -30428316 - L1PA4 LINE L1 -3 6152 5913 1517 153 68 82 chr21 4479254 4479349 -30428221 - MER46B DNA MER2_type -2635 96 1 25 31 0 0 chr21 4479490 4479522 -30428048 + AT_rich Low_complexity Low_complexity 1 32 0 1843 119 56 0 chr21 4479593 4479861 -30427709 - AluSx SINE Alu -10 302 20 977 168 12 0 chr21 4480456 4480629 -30426941 + MER5B DNA MER1_type 4 178 0 761 227 11 6 chr21 4481748 4481924 -30425646 + MER44D DNA MER2_type 3 449 -160 486 200 22 0 chr21 4481957 4482047 -30425523 + MER44D DNA MER2_type 514 605 0 2125 88 0 7 chr21 4482115 4482398 -30425172 - AluSc SINE Alu 0 309 29 378 0 0 0 chr21 4483601 4483643 -30423927 + (A)n Simple_repeat Simple_repeat 1 42 0 396 0 0 0 chr21 4484976 4485020 -30422550 + (TG)n Simple_repeat Simple_repeat 2 45 0 249 295 48 60 chr21 4486230 4486396 -30421174 + MIR3 SINE MIR 32 195 -13 21 0 0 0 chr21 4486522 4486543 -30421027 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr21 4488085 4488112 -30419458 + (TG)n Simple_repeat Simple_repeat 2 28 0 12966 137 50 40 chr21 4488733 4489423 -30418147 - Tigger1 DNA MER2_type 0 2418 1736 2514 69 0 0 chr21 4489423 4489727 -30417843 - AluY SINE Alu -7 304 1 12966 137 50 40 chr21 4489727 4490772 -30416798 - Tigger1 DNA MER2_type -682 1736 702 2637 45 0 0 chr21 4490772 4491083 -30416487 - AluY SINE Alu 0 311 1 12966 137 50 40 chr21 4491083 4491321 -30416249 - Tigger1 DNA MER2_type -1716 702 468 1808 142 51 0 chr21 4491321 4491476 -30416094 - AluSx SINE Alu -21 291 114 213 65 0 0 chr21 4491476 4491507 -30416063 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1808 142 51 0 chr21 4491507 4491626 -30415944 - AluSx SINE Alu -198 114 3 12966 137 50 40 chr21 4491626 4492046 -30415524 - Tigger1 DNA MER2_type -1950 468 1 219 185 19 0 chr21 4492367 4492421 -30415149 + (TA)n Simple_repeat Simple_repeat 2 56 0 295 152 53 12 chr21 4492506 4492677 -30414893 + (TA)n Simple_repeat Simple_repeat 1 178 0 374 287 21 0 chr21 4493761 4493855 -30413715 + MIR SINE MIR 31 126 -136 346 364 35 12 chr21 4496318 4496491 -30411079 - MIR SINE MIR -36 226 50 195 42 0 0 chr21 4496753 4496777 -30410793 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 29 47 0 0 chr21 4496995 4497038 -30410532 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 4497077 4497099 -30410471 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr21 4497181 4497210 -30410360 + AT_rich Low_complexity Low_complexity 1 29 0 321 293 87 7 chr21 4499968 4500118 -30407452 - HAL1 LINE L1 -115 2392 2231 328 244 6 83 chr21 4500128 4500296 -30407274 - HAL1 LINE L1 -309 2198 2044 601 128 8 8 chr21 4500297 4500414 -30407156 + (TCCC)n Simple_repeat Simple_repeat 3 119 0 2137 93 7 10 chr21 4500416 4500705 -30406865 - AluSx SINE Alu -14 298 11 267 331 6 11 chr21 4500706 4500814 -30406756 + CT-rich Low_complexity Low_complexity 3 177 0 223 47 0 47 chr21 4501131 4501174 -30406396 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 501 231 0 16 chr21 4501204 4501325 -30406245 + MLT1D LTR MaLR 365 483 -22 559 201 13 0 chr21 4501592 4501741 -30405829 + C-rich Low_complexity Low_complexity 1 151 0 2312 103 0 0 chr21 4501946 4502327 -30405243 + AluSg SINE Alu 1 381 0 267 315 117 49 chr21 4502592 4502644 -30404926 - L2 LINE L2 -459 2855 2808 225 0 0 0 chr21 4502644 4502669 -30404901 + (TTA)n Simple_repeat Simple_repeat 2 26 0 267 315 117 49 chr21 4502669 4502924 -30404646 - L2 LINE L2 -506 2808 2527 869 196 29 0 chr21 4503341 4503514 -30404056 - AluJo SINE Alu -134 178 1 584 174 7 20 chr21 4505628 4505777 -30401793 + CT-rich Low_complexity Low_complexity 3 149 0 946 310 58 19 chr21 4506690 4507067 -30400503 + L2 LINE L2 2922 3313 0 313 350 0 0 chr21 4507086 4507209 -30400361 - L1ME LINE L1 -521 5600 5478 2149 90 3 10 chr21 4507266 4507567 -30400003 - AluSg SINE Alu -3 307 9 3018 138 15 4 chr21 4507739 4508219 -30399351 - L1PA16 LINE L1 -14 6152 5668 37 23 0 0 chr21 4509756 4509800 -30397770 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr21 4510565 4510590 -30396980 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr21 4511694 4511716 -30395854 + AT_rich Low_complexity Low_complexity 1 22 0 297 0 0 0 chr21 4515143 4515176 -30392394 + (TG)n Simple_repeat Simple_repeat 1 33 0 2197 93 7 29 chr21 4515615 4515925 -30391645 - AluSc SINE Alu -5 304 2 659 176 0 8 chr21 4517893 4518012 -30389558 - MSTD LTR MaLR -1 395 278 4508 80 20 2 chr21 4518082 4518694 -30388876 - L1PA10 LINE L1 -10 6158 5536 848 222 38 5 chr21 4518817 4519002 -30388568 - MSTD LTR MaLR -205 191 1 188 386 51 0 chr21 4519072 4519248 -30388322 + L2 LINE L2 2040 2224 -1090 621 321 64 0 chr21 4519548 4519797 -30387773 - LTR16C LTR ERVL -222 269 5 419 308 23 68 chr21 4519812 4520078 -30387492 - L1ME LINE L1 -372 5749 5496 2481 74 0 13 chr21 4520078 4520387 -30387183 - AluSp SINE Alu -8 305 1 2196 122 0 10 chr21 4521261 4521565 -30386005 - AluSx SINE Alu -9 303 3 300 348 22 0 chr21 4521631 4521723 -30385847 - L2 LINE L2 -15 3298 3205 1980 112 3 75 chr21 4523772 4524092 -30383478 + AluSx SINE Alu 4 300 -12 26 64 0 0 chr21 4524197 4524244 -30383326 + AT_rich Low_complexity Low_complexity 1 47 0 26 82 0 0 chr21 4524930 4524991 -30382579 + AT_rich Low_complexity Low_complexity 1 61 0 222 37 0 0 chr21 4525809 4525836 -30381734 + (CA)n Simple_repeat Simple_repeat 2 28 0 2050 106 7 0 chr21 4527228 4527510 -30380060 + AluSx SINE Alu 1 284 -28 1216 131 11 0 chr21 4527510 4527538 -30380032 + AluSq SINE Alu 1 312 0 23 33 0 0 chr21 4528843 4528873 -30378697 + AT_rich Low_complexity Low_complexity 1 30 0 286 300 92 8 chr21 4529240 4529370 -30378200 - MLT1J2 LTR MaLR -263 187 47 2013 127 7 10 chr21 4532509 4532809 -30374761 - AluSp SINE Alu -13 300 2 355 306 90 0 chr21 4534594 4534738 -30372832 + MIR SINE MIR 50 206 -56 344 111 16 0 chr21 4536044 4536107 -30371463 + (TA)n Simple_repeat Simple_repeat 1 64 0 2494 67 0 10 chr21 4536109 4536446 -30371124 - AluY SINE Alu 0 334 1 24 0 0 0 chr21 4536456 4536480 -30371090 + AT_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr21 4537908 4537940 -30369630 + (TG)n Simple_repeat Simple_repeat 2 33 0 2123 121 16 0 chr21 4537944 4538251 -30369319 - AluSp SINE Alu -1 312 1 342 0 0 0 chr21 4538631 4538669 -30368901 + (TA)n Simple_repeat Simple_repeat 2 39 0 209 330 94 66 chr21 4538685 4539003 -30368567 - L2 LINE L2 -1387 1927 1601 332 278 7 69 chr21 4539395 4539539 -30368031 + L2 LINE L2 2614 2748 -566 254 273 71 30 chr21 4541800 4541899 -30365671 + MIR SINE MIR 44 146 -62 29731 109 19 10 chr21 4542162 4548538 -30359032 + L1PA7 LINE L1 1 6464 -5 26 0 0 0 chr21 4549095 4549121 -30358449 + AT_rich Low_complexity Low_complexity 1 26 0 757 252 25 10 chr21 4549926 4550124 -30357446 + MIR SINE MIR 46 246 -16 21 36 0 0 chr21 4550561 4550589 -30356981 + AT_rich Low_complexity Low_complexity 1 28 0 305 143 0 0 chr21 4551284 4551333 -30356237 - L1MC4 LINE L1 -1339 6703 6655 1793 174 0 10 chr21 4551333 4551631 -30355939 - AluSx SINE Alu -7 305 11 203 328 15 0 chr21 4552394 4552461 -30355109 - L2 LINE L2 0 3272 3205 25 31 0 0 chr21 4552701 4552733 -30354837 + AT_rich Low_complexity Low_complexity 1 32 0 386 323 47 28 chr21 4553788 4554042 -30353528 - L3 LINE CR1 -593 984 726 27 62 0 0 chr21 4555012 4555060 -30352510 + AT_rich Low_complexity Low_complexity 1 48 0 23 33 0 0 chr21 4555119 4555149 -30352421 + AT_rich Low_complexity Low_complexity 1 30 0 270 246 15 0 chr21 4555393 4555458 -30352112 - MER5B DNA MER1_type -3 175 110 259 206 137 14 chr21 4555463 4555536 -30352034 + L1MA10 LINE L1 6213 6294 -40 446 319 0 8 chr21 4555624 4555743 -30351827 - MER5B DNA MER1_type -59 119 2 251 209 0 70 chr21 4555810 4555896 -30351674 - L1MC4 LINE L1 -1339 6703 6624 180 0 0 0 chr21 4555896 4555916 -30351654 + (TG)n Simple_repeat Simple_repeat 2 21 0 1731 167 7 10 chr21 4555933 4556226 -30351344 - AluJo SINE Alu -20 292 1 1418 142 0 9 chr21 4556276 4556487 -30351083 + AluJb SINE Alu 87 295 -17 2030 142 7 0 chr21 4557354 4557663 -30349907 - AluSx SINE Alu 0 312 2 683 192 0 0 chr21 4558611 4558731 -30348839 - FLAM_A SINE Alu -13 129 10 21 0 0 0 chr21 4558849 4558870 -30348700 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr21 4560742 4560772 -30346798 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr21 4561613 4561651 -30345919 + AT_rich Low_complexity Low_complexity 1 38 0 2059 133 3 7 chr21 4561998 4562307 -30345263 + AluSx SINE Alu 5 312 0 23 33 0 0 chr21 4562694 4562724 -30344846 + AT_rich Low_complexity Low_complexity 1 30 0 1612 199 6 18 chr21 4564333 4564670 -30342900 - MLT1A1 LTR MaLR -7 358 26 22 0 0 0 chr21 4565316 4565338 -30342232 + AT_rich Low_complexity Low_complexity 1 22 0 2034 124 7 0 chr21 4565548 4565847 -30341723 + AluSx SINE Alu 1 301 -11 387 0 0 0 chr21 4565866 4565909 -30341661 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2069 101 0 37 chr21 4565909 4566207 -30341363 - AluSx SINE Alu -25 287 1 2008 121 50 0 chr21 4567585 4567883 -30339687 - AluSq SINE Alu 0 313 1 186 167 0 0 chr21 4569060 4569096 -30338474 + (TA)n Simple_repeat Simple_repeat 2 37 0 1348 96 5 11 chr21 4569203 4569420 -30338150 - AluSg/x SINE Alu 0 322 107 506 139 13 0 chr21 4569454 4569533 -30338037 - L1PB4 LINE L1 -12 6144 6065 1816 159 43 35 chr21 4571495 4571866 -30335704 - THE1C LTR MaLR -1 374 1 24 32 0 0 chr21 4575916 4575947 -30331623 + AT_rich Low_complexity Low_complexity 1 31 0 255 208 21 10 chr21 4577735 4577831 -30329739 + (TA)n Simple_repeat Simple_repeat 2 98 0 364 307 45 12 chr21 4577919 4578163 -30329407 + HAL1b LINE L1 629 880 -468 303 28 0 0 chr21 4578414 4578450 -30329120 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 252 0 0 0 chr21 4578567 4578595 -30328975 + (T)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr21 4579195 4579219 -30328351 + AT_rich Low_complexity Low_complexity 1 24 0 2155 108 7 0 chr21 4580572 4580867 -30326703 - AluSq SINE Alu -16 297 1 341 245 127 10 chr21 4581005 4581132 -30326438 + MIR SINE MIR 62 200 -62 311 78 20 0 chr21 4581679 4581730 -30325840 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 184 265 153 31 chr21 4582393 4582491 -30325079 + MIR3 SINE MIR 93 202 -6 1704 103 0 0 chr21 4583344 4583567 -30324003 + AluSg/x SINE Alu 76 298 -12 219 333 78 11 chr21 4585628 4585718 -30321852 - L2 LINE L2 -15 3298 3203 639 294 72 8 chr21 4587775 4588010 -30319560 - MIR SINE MIR -10 252 3 1042 208 30 118 chr21 4588901 4589301 -30318269 - MLT1A1 LTR MaLR 0 365 1 313 214 0 0 chr21 4589352 4589408 -30318162 - Charlie5 DNA MER1_type -2556 56 1 198 0 0 0 chr21 4590948 4590970 -30316600 + (A)n Simple_repeat Simple_repeat 1 22 0 239 104 21 0 chr21 4590990 4591038 -30316532 + (GA)n Simple_repeat Simple_repeat 2 50 0 2319 107 0 0 chr21 4591365 4591664 -30315906 + AluSx SINE Alu 1 299 -13 23 54 0 0 chr21 4591683 4591720 -30315850 + AT_rich Low_complexity Low_complexity 1 37 0 1989 147 0 0 chr21 4592935 4593235 -30314335 + AluSx SINE Alu 1 300 -12 438 310 99 6 chr21 4594015 4594186 -30313384 - MIR SINE MIR -62 200 14 269 380 82 0 chr21 4594719 4594877 -30312693 - MIR SINE MIR -87 175 5 1276 208 64 69 chr21 4595182 4595571 -30311999 - MLT1B LTR MaLR -3 387 1 26 0 0 0 chr21 4596408 4596434 -30311136 + AT_rich Low_complexity Low_complexity 1 26 0 423 0 0 0 chr21 4602492 4602539 -30305031 + (TG)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr21 4602779 4602804 -30304766 + AT_rich Low_complexity Low_complexity 1 25 0 23 54 0 0 chr21 4602856 4602893 -30304677 + AT_rich Low_complexity Low_complexity 1 37 0 199 310 0 46 chr21 4604849 4604936 -30302634 + MIR SINE MIR 59 141 -121 183 42 0 0 chr21 4608061 4608085 -30299485 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2624 10 0 7 chr21 4608145 4608445 -30299125 - AluYb8 SINE Alu -17 301 4 1000 322 94 26 chr21 4610293 4611197 -30296373 + L2 LINE L2 2339 3309 -4 729 153 0 0 chr21 4611486 4611597 -30295973 + AluSg/x SINE Alu 171 281 -29 2778 0 0 7 chr21 4613886 4614194 -30293376 - AluY SINE Alu -5 306 1 677 208 13 13 chr21 4614194 4614343 -30293227 - L1MD3 LINE L1 -7 7988 7837 1160 106 12 0 chr21 4614400 4614586 -30292984 + AluSp SINE Alu 120 307 0 904 322 42 21 chr21 4615185 4615592 -30291978 + L2 LINE L2 2420 2838 -476 2285 128 11 13 chr21 4615592 4615968 -30291602 + THE1C LTR MaLR 1 375 0 904 322 42 21 chr21 4615968 4615986 -30291584 + L2 LINE L2 2838 2854 -460 1012 91 0 0 chr21 4617030 4617162 -30290408 + AluSg SINE Alu 2 133 -177 2428 88 0 0 chr21 4617162 4617470 -30290100 + AluSg SINE Alu 1 308 -2 25 51 0 0 chr21 4617960 4617999 -30289571 + AT_rich Low_complexity Low_complexity 1 39 0 1549 162 52 0 chr21 4619001 4619273 -30288297 + AluSx SINE Alu 1 286 -26 22 35 0 0 chr21 4620518 4620547 -30287023 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 4621459 4621487 -30286083 + AT_rich Low_complexity Low_complexity 1 28 0 853 176 176 32 chr21 4621677 4621955 -30285615 + L1MA9 LINE L1 5995 6312 0 222 109 0 65 chr21 4623547 4623593 -30283977 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 23 33 0 0 chr21 4624205 4624235 -30283335 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr21 4624805 4624831 -30282739 + AT_rich Low_complexity Low_complexity 1 26 0 229 323 15 0 chr21 4629945 4630010 -30277560 + L2 LINE L2 3248 3313 0 827 256 5 28 chr21 4630493 4630704 -30276866 - MER63A DNA MER1_type -4 206 1 250 64 43 0 chr21 4631842 4631889 -30275681 + LTR66 LTR ERVL 173 221 -389 27 29 0 0 chr21 4632602 4632636 -30274934 + AT_rich Low_complexity Low_complexity 1 34 0 28 91 0 0 chr21 4633513 4633590 -30273980 + AT_rich Low_complexity Low_complexity 1 77 0 363 229 17 8 chr21 4633874 4634121 -30273449 + (TA)n Simple_repeat Simple_repeat 1 249 0 368 200 13 0 chr21 4634600 4634675 -30272895 - MER5A DNA MER1_type -87 102 27 293 309 67 57 chr21 4634670 4634880 -30272690 + MIR SINE MIR 7 218 -44 290 311 0 0 chr21 4635057 4635131 -30272439 - L2 LINE L2 0 3272 3199 182 333 50 0 chr21 4636618 4636678 -30270892 - L2 LINE L2 -5 3308 3246 689 313 40 36 chr21 4636752 4637277 -30270293 - L2 LINE L2 -158 3155 2636 191 114 29 0 chr21 4637464 4637499 -30270071 + CT-rich Low_complexity Low_complexity 1 36 0 690 324 26 22 chr21 4637779 4638051 -30269519 - L2 LINE L2 -832 2482 2210 23 0 0 0 chr21 4638167 4638190 -30269380 + AT_rich Low_complexity Low_complexity 1 23 0 277 305 32 21 chr21 4638299 4638394 -30269176 + MER5A DNA MER1_type 7 102 -87 24 53 0 0 chr21 4638540 4638578 -30268992 + AT_rich Low_complexity Low_complexity 1 38 0 209 205 0 0 chr21 4640262 4640301 -30267269 + (TATG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr21 4641056 4641079 -30266491 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 4642025 4642050 -30265520 + AT_rich Low_complexity Low_complexity 1 25 0 292 174 41 0 chr21 4642421 4642542 -30265028 + (TA)n Simple_repeat Simple_repeat 1 126 0 262 211 63 0 chr21 4643461 4643556 -30264014 + (TA)n Simple_repeat Simple_repeat 2 102 0 398 19 0 19 chr21 4643757 4643809 -30263761 + (TG)n Simple_repeat Simple_repeat 2 52 0 700 295 52 71 chr21 4643896 4644438 -30263132 - L2 LINE L2 0 3313 2730 2136 109 3 0 chr21 4644497 4644790 -30262780 + AluSc SINE Alu 1 294 -15 23 68 0 0 chr21 4645657 4645701 -30261869 + AT_rich Low_complexity Low_complexity 1 44 0 212 264 40 80 chr21 4647476 4647601 -30259969 + L3 LINE CR1 842 961 -616 221 264 28 42 chr21 4648839 4648911 -30258659 - MER5A DNA MER1_type -110 79 9 398 299 9 23 chr21 4649033 4649177 -30258393 + MIR SINE MIR 26 169 -39 288 237 53 0 chr21 4649235 4649311 -30258259 - MER116 DNA Mariner 0 80 1 22 0 0 0 chr21 4649710 4649732 -30257838 + AT_rich Low_complexity Low_complexity 1 22 0 1224 114 0 0 chr21 4650346 4650522 -30257048 - AluSg/x SINE Alu -10 300 125 1910 233 59 0 chr21 4650548 4651000 -30256570 + L1MB3 LINE L1 5610 6086 -97 1067 127 38 139 chr21 4651343 4651610 -30255960 - MLT1A1 LTR MaLR -125 240 1 198 291 93 12 chr21 4651637 4651723 -30255847 + MIR SINE MIR 170 262 0 2210 119 3 0 chr21 4651975 4652287 -30255283 - AluSp SINE Alu 0 313 1 229 296 25 37 chr21 4652444 4652525 -30255045 - MIR SINE MIR -110 98 19 2336 66 7 3 chr21 4652931 4653232 -30254338 - AluY SINE Alu -9 302 1 28 79 0 0 chr21 4654248 4654311 -30253259 + AT_rich Low_complexity Low_complexity 1 63 0 657 247 98 0 chr21 4655343 4655517 -30252053 + MIR SINE MIR 11 201 -61 23 33 0 0 chr21 4656793 4656823 -30250747 + AT_rich Low_complexity Low_complexity 1 30 0 229 159 32 0 chr21 4657793 4657856 -30249714 + (TA)n Simple_repeat Simple_repeat 2 66 0 241 308 15 0 chr21 4658249 4658314 -30249256 - L3 LINE CR1 -1 1576 1511 1708 168 85 0 chr21 4658860 4659188 -30248382 - MER93b LTR ERV1 -17 356 1 220 208 151 82 chr21 4659629 4659788 -30247782 - L2 LINE L2 -55 3258 3089 37 39 0 0 chr21 4659983 4660034 -30247536 + AT_rich Low_complexity Low_complexity 1 51 0 379 310 60 19 chr21 4660269 4660485 -30247085 - L1MEd LINE L1 -5084 1035 811 22 0 0 0 chr21 4661464 4661486 -30246084 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr21 4662985 4663028 -30244542 + AT_rich Low_complexity Low_complexity 1 43 0 440 319 43 34 chr21 4664078 4664313 -30243257 + MIR SINE MIR 26 262 0 1774 179 3 3 chr21 4666749 4667039 -30240531 - AluJb SINE Alu -22 290 1 25 65 0 0 chr21 4667304 4667350 -30240220 + AT_rich Low_complexity Low_complexity 1 46 0 229 220 0 0 chr21 4667442 4667492 -30240078 + A-rich Low_complexity Low_complexity 1 50 0 1908 135 3 26 chr21 4667508 4667811 -30239759 - AluSp SINE Alu -17 296 1 1122 209 106 32 chr21 4668054 4668394 -30239176 - MLT1A1 LTR MaLR 0 365 1 633 211 106 19 chr21 4668404 4668565 -30239005 - MLT1A1-int LTR MaLR -11 1724 1550 518 279 55 40 chr21 4668643 4668844 -30238726 - L1ME LINE L1 -303 5818 5615 255 61 0 0 chr21 4669202 4669235 -30238335 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 1873 117 50 73 chr21 4669260 4669644 -30237926 + THE1C LTR MaLR 1 375 0 470 199 109 51 chr21 4669697 4669853 -30237717 + MER50 LTR ERV1 1 165 -569 1648 197 90 57 chr21 4669918 4670395 -30237175 + MER50 LTR ERV1 240 732 -2 871 317 68 36 chr21 4670727 4670953 -30236617 - L2 LINE L2 -378 2936 2719 2551 41 0 10 chr21 4670953 4671116 -30236454 - AluY SINE Alu 0 311 1 1205 53 0 7 chr21 4671117 4671267 -30236303 - AluY SINE Alu -162 149 1 473 323 77 19 chr21 4671268 4671550 -30236020 - L2 LINE L2 -600 2714 2450 2401 109 14 0 chr21 4671550 4671900 -30235670 + THE1A LTR MaLR 1 355 0 473 323 77 19 chr21 4671900 4672104 -30235466 - L2 LINE L2 -864 2450 2180 244 300 81 19 chr21 4672827 4672987 -30234583 - MIR SINE MIR -46 216 47 200 299 0 13 chr21 4673000 4673077 -30234493 + (TA)n Simple_repeat Simple_repeat 2 77 0 21 0 0 0 chr21 4673354 4673375 -30234195 + AT_rich Low_complexity Low_complexity 1 21 0 2008 133 0 7 chr21 4674132 4674425 -30233145 - AluSx SINE Alu -21 291 1 2074 76 0 0 chr21 4674912 4675174 -30232396 + AluY SINE Alu 37 298 -13 396 0 0 0 chr21 4675327 4675371 -30232199 + (TG)n Simple_repeat Simple_repeat 2 45 0 5020 153 27 3 chr21 4676509 4677396 -30230174 - L1MA6 LINE L1 0 6300 5393 672 90 69 3 chr21 4677396 4677717 -30229853 + (TA)n Simple_repeat Simple_repeat 1 342 0 225 62 92 0 chr21 4677735 4677800 -30229770 + (TA)n Simple_repeat Simple_repeat 1 71 0 447 60 104 12 chr21 4677818 4678069 -30229501 + (TA)n Simple_repeat Simple_repeat 1 274 0 26 0 0 0 chr21 4678069 4678095 -30229475 + AT_rich Low_complexity Low_complexity 1 26 0 3022 148 34 40 chr21 4678095 4678771 -30228799 - L1MA6 LINE L1 -759 5387 4716 1599 145 62 6 chr21 4678790 4679115 -30228455 + L1MA5A LINE L1 5955 6297 0 287 138 0 0 chr21 4679120 4679178 -30228392 + L1MA4A LINE L1 6241 6298 -5 24 32 0 0 chr21 4679215 4679246 -30228324 + AT_rich Low_complexity Low_complexity 1 31 0 2919 9 0 0 chr21 4679374 4679690 -30227880 - AluYb8 SINE Alu -2 316 1 191 306 82 41 chr21 4680657 4680755 -30226815 + MIR3 SINE MIR 84 185 -23 204 188 0 0 chr21 4682319 4682351 -30225219 + polypyrimidine Low_complexity Low_complexity 1 32 0 264 224 0 0 chr21 4682452 4682519 -30225051 + (TA)n Simple_repeat Simple_repeat 1 67 0 36 53 0 0 chr21 4682522 4682579 -30224991 + AT_rich Low_complexity Low_complexity 1 57 0 1889 97 23 0 chr21 4683165 4683339 -30224231 - AluSg SINE Alu -7 303 120 192 40 0 0 chr21 4683339 4683364 -30224206 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1889 97 23 0 chr21 4683364 4683447 -30224123 - AluSg SINE Alu -190 120 40 23 54 0 0 chr21 4686224 4686261 -30221309 + AT_rich Low_complexity Low_complexity 1 37 0 2213 108 3 23 chr21 4686280 4686585 -30220985 + AluSx SINE Alu 2 300 -12 261 0 0 0 chr21 4687066 4687095 -30220475 + (A)n Simple_repeat Simple_repeat 1 29 0 2177 92 3 0 chr21 4687098 4687380 -30220190 + AluSq SINE Alu 1 283 -30 26 64 0 0 chr21 4689403 4689450 -30218120 + AT_rich Low_complexity Low_complexity 1 47 0 606 312 12 47 chr21 4689468 4689601 -30217969 + MIR SINE MIR 19 140 -122 2118 117 0 25 chr21 4689601 4689917 -30217653 + AluSx SINE Alu 1 308 -4 606 312 12 47 chr21 4689917 4690036 -30217534 + MIR SINE MIR 140 262 0 671 310 113 43 chr21 4690377 4691022 -30216548 + L2 LINE L2 2635 3313 0 2272 105 0 3 chr21 4691130 4691424 -30216146 + AluSg SINE Alu 1 293 -17 258 282 0 0 chr21 4695603 4695706 -30211864 + (TA)n Simple_repeat Simple_repeat 1 103 0 239 79 0 26 chr21 4697448 4697486 -30210084 + HSMAR1 DNA Mariner 1 37 -1250 999 50 0 0 chr21 4697759 4697879 -30209691 - AluY SINE Alu -1 310 191 29 28 0 0 chr21 4699523 4699559 -30208011 + AT_rich Low_complexity Low_complexity 1 36 0 633 278 15 30 chr21 4701542 4701740 -30205830 - L2 LINE L2 0 3313 3119 1024 179 58 29 chr21 4701741 4701948 -30205622 + AluJb SINE Alu 2 214 -98 337 343 37 0 chr21 4701977 4702085 -30205485 - L2 LINE L2 -254 3059 2948 2225 117 7 0 chr21 4703789 4704098 -30203472 - AluSx SINE Alu -1 311 1 22 0 0 0 chr21 4705205 4705227 -30202343 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 4705342 4705365 -30202205 + AT_rich Low_complexity Low_complexity 1 23 0 1172 262 35 11 chr21 4705476 4705842 -30201728 - L1MC4a LINE L1 -7 7801 7427 2508 179 71 54 chr21 4706156 4706459 -30201111 - MLT2B3 LTR ERVL -8 546 229 3381 127 39 6 chr21 4706459 4706995 -30200575 - MER41C LTR ERV1 0 554 1 2508 179 71 54 chr21 4706995 4707228 -30200342 - MLT2B3 LTR ERVL -325 229 1 184 264 54 78 chr21 4707530 4707659 -30199911 + L2 LINE L2 1796 1921 -1393 2510 74 0 0 chr21 4708382 4708692 -30198878 - AluY SINE Alu -1 310 1 899 126 0 20 chr21 4709790 4709941 -30197629 - LTR7 LTR ERV1 0 450 303 833 135 30 31 chr21 4710220 4710388 -30197182 - LTR7 LTR ERV1 -232 218 1 3416 133 6 9 chr21 4710388 4710931 -30196639 - HERVH LTR ERV1 0 7713 7173 26 0 0 0 chr21 4710943 4710969 -30196601 + AT_rich Low_complexity Low_complexity 1 26 0 950 131 7 0 chr21 4710985 4711130 -30196440 - HERVH LTR ERV1 -765 6948 6803 252 0 0 0 chr21 4711132 4711160 -30196410 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6678 39 4 0 chr21 4711160 4711964 -30195606 - L1PA3 LINE L1 -18 6137 5331 1696 206 3 0 chr21 4711964 4712290 -30195280 - HERVH LTR ERV1 -898 6815 6489 5471 228 22 17 chr21 4712290 4714085 -30193485 - HERVH LTR ERV1 -3184 5235 2790 8535 144 7 38 chr21 4714059 4715556 -30192014 - HERVH LTR ERV1 -5275 2438 989 896 191 64 20 chr21 4715566 4715770 -30191800 - LTR7 LTR ERV1 0 450 238 882 123 10 20 chr21 4716199 4716367 -30191203 - LTR7 LTR ERV1 -232 218 1 1911 163 31 98 chr21 4717987 4718265 -30189305 - MER21B LTR ERV1 -49 814 519 2217 105 0 3 chr21 4718265 4718561 -30189009 - AluSg SINE Alu -13 297 3 2079 124 3 7 chr21 4718567 4718874 -30188696 - AluSq SINE Alu -7 306 1 1911 163 31 98 chr21 4718874 4719036 -30188534 - MER21B LTR ERV1 -349 514 397 813 188 74 0 chr21 4719036 4719185 -30188385 + AluSg/x SINE Alu 135 294 -16 1314 211 8 31 chr21 4719208 4719468 -30188102 - MER21B LTR ERV1 -460 403 150 14134 150 46 16 chr21 4719576 4721169 -30186401 - Tigger2 DNA MER2_type -4 2714 1002 2072 102 44 0 chr21 4721169 4721462 -30186108 - AluSx SINE Alu -6 306 1 14134 150 46 16 chr21 4721462 4722495 -30185075 - Tigger2 DNA MER2_type -1716 1002 1 192 40 0 0 chr21 4723338 4723363 -30184207 + (CA)n Simple_repeat Simple_repeat 2 26 0 855 239 4 31 chr21 4723497 4723618 -30183952 + AluJo SINE Alu 1 115 -197 216 0 0 0 chr21 4723618 4723642 -30183928 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 855 239 4 31 chr21 4723642 4723746 -30183824 + AluJo SINE Alu 115 220 -92 626 122 0 13 chr21 4723746 4723877 -30183693 + AluSg/x SINE Alu 86 288 -21 452 335 6 12 chr21 4724755 4724919 -30182651 + MIR SINE MIR 68 230 -32 547 205 5 32 chr21 4725364 4725549 -30182021 + GA-rich Low_complexity Low_complexity 1 180 0 2427 258 45 32 chr21 4727066 4727764 -30179806 - L1MC3 LINE L1 -12 7915 7228 17755 44 6 0 chr21 4727764 4730817 -30176753 - L1PA5 LINE L1 -8 6146 3146 2427 258 45 32 chr21 4730817 4730975 -30176595 - L1MC3 LINE L1 -699 7228 7074 288 0 0 0 chr21 4730975 4731007 -30176563 + (GA)n Simple_repeat Simple_repeat 2 33 0 1865 146 7 26 chr21 4731007 4731316 -30176254 + AluSq SINE Alu 3 305 -8 2427 258 45 32 chr21 4731316 4731748 -30175822 - L1MC3 LINE L1 -852 7075 6675 1254 269 24 5 chr21 4731983 4732761 -30174809 - L1M4 LINE L1 -1886 4260 3433 21 36 0 0 chr21 4732790 4732818 -30174752 + AT_rich Low_complexity Low_complexity 1 28 0 387 163 163 31 chr21 4734061 4734159 -30173411 - MLT1E1 LTR MaLR -543 111 1 1954 164 51 0 chr21 4734928 4735299 -30172271 - MLT1B LTR MaLR 0 390 1 276 30 0 0 chr21 4735426 4735459 -30172111 + (TA)n Simple_repeat Simple_repeat 1 33 0 183 80 0 0 chr21 4738165 4738190 -30169380 + (T)n Simple_repeat Simple_repeat 1 25 0 26 50 0 0 chr21 4739731 4739771 -30167799 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr21 4740260 4740290 -30167280 + AT_rich Low_complexity Low_complexity 1 30 0 692 184 7 21 chr21 4743092 4743233 -30164337 - FAM SINE Alu -6 43 1 330 248 150 7 chr21 4745029 4745182 -30162388 - MIR SINE MIR -37 225 51 581 265 42 21 chr21 4746760 4746998 -30160572 - L1ME3 LINE L1 -190 5972 5730 2487 68 0 0 chr21 4747492 4747803 -30159767 - AluY SINE Alu 0 311 1 27 29 0 0 chr21 4748527 4748561 -30159009 + AT_rich Low_complexity Low_complexity 1 34 0 28 48 0 0 chr21 4749804 4749846 -30157724 + AT_rich Low_complexity Low_complexity 1 42 0 329 298 105 18 chr21 4752246 4752417 -30155153 + MIR SINE MIR 18 203 -59 22 0 0 0 chr21 4753288 4753310 -30154260 + AT_rich Low_complexity Low_complexity 1 22 0 213 214 0 0 chr21 4753629 4753671 -30153899 + A-rich Low_complexity Low_complexity 1 42 0 205 364 0 0 chr21 4754453 4754519 -30153051 + MIR SINE MIR 57 122 -140 1955 161 0 3 chr21 4754857 4755162 -30152408 + AluSx SINE Alu 7 310 -2 2174 122 0 0 chr21 4756166 4756469 -30151101 - AluSc SINE Alu -6 303 1 1677 177 7 0 chr21 4757518 4757789 -30149781 + AluJb SINE Alu 1 273 -39 219 36 0 0 chr21 4758216 4758244 -30149326 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2126 127 0 7 chr21 4758319 4758619 -30148951 - AluSx SINE Alu -11 301 4 22 35 0 0 chr21 4758657 4758686 -30148884 + AT_rich Low_complexity Low_complexity 1 29 0 2297 100 0 6 chr21 4759099 4759410 -30148160 + AluSg SINE Alu 1 309 -1 446 361 58 45 chr21 4759809 4760205 -30147365 + L2 LINE L2 2862 3262 -10 297 302 39 77 chr21 4760486 4760668 -30146902 - MIR3 SINE MIR -3 205 31 613 201 7 28 chr21 4760711 4760855 -30146715 - L1MD3 LINE L1 -14 7981 7841 2700 227 59 27 chr21 4760857 4761034 -30146536 - L1MC4a LINE L1 -226 7582 7412 6175 31 1 3 chr21 4761034 4761775 -30145795 - L1PA5 LINE L1 -1 6153 5414 2700 227 59 27 chr21 4761775 4763167 -30144403 - L1MC4a LINE L1 -396 7412 5775 5766 161 58 8 chr21 4763170 4764260 -30143310 + Tigger3b DNA MER2_type 1 1144 -87 583 156 56 56 chr21 4764344 4764504 -30143066 + Tigger3b DNA MER2_type 1072 1231 0 355 280 35 0 chr21 4764506 4764649 -30142921 - L1MC4a LINE L1 -2037 5771 5624 625 290 87 23 chr21 4764803 4764949 -30142621 - L1MC4a LINE L1 -866 5280 5145 1741 119 103 0 chr21 4764949 4765202 -30142368 + AluSg SINE Alu 1 279 -31 625 290 87 23 chr21 4765202 4765852 -30141718 - L1MC4a LINE L1 -1001 5145 4674 428 330 67 19 chr21 4765860 4766442 -30141128 - L1MC4a LINE L1 -1482 4664 4055 340 250 8 8 chr21 4766484 4766606 -30140964 + (TATATG)n Simple_repeat Simple_repeat 4 128 -7 225 0 0 0 chr21 4766606 4766631 -30140939 + (CA)n Simple_repeat Simple_repeat 2 26 0 340 250 8 8 chr21 4766631 4766640 -30140930 + (TATATG)n Simple_repeat Simple_repeat 127 135 0 364 325 50 3 chr21 4766815 4767126 -30140444 - L1MC4a LINE L1 -2315 3831 3502 367 282 71 61 chr21 4767295 4767575 -30139995 - L1MC4a LINE L1 -2812 3334 3052 223 241 13 63 chr21 4767646 4767725 -30139845 - MER5A DNA MER1_type -45 144 70 298 350 17 17 chr21 4771278 4771395 -30136175 - MIR SINE MIR -67 141 25 309 118 0 0 chr21 4771916 4771967 -30135603 + (T)n Simple_repeat Simple_repeat 1 51 0 222 118 0 0 chr21 4772101 4772135 -30135435 + (TG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr21 4774863 4774885 -30132685 + AT_rich Low_complexity Low_complexity 1 22 0 247 206 0 22 chr21 4776383 4776475 -30131095 + (TA)n Simple_repeat Simple_repeat 2 91 0 190 295 116 45 chr21 4777130 4777242 -30130328 - L2 LINE L2 -10 3303 3184 2191 130 22 19 chr21 4777664 4778026 -30129544 - THE1B LTR MaLR -1 363 1 23 0 0 0 chr21 4778267 4778290 -30129280 + AT_rich Low_complexity Low_complexity 1 23 0 1713 169 158 11 chr21 4778827 4779200 -30128370 + MSTA LTR MaLR 1 428 0 414 39 0 0 chr21 4780245 4780297 -30127273 + (CA)n Simple_repeat Simple_repeat 1 52 0 1975 157 19 32 chr21 4780700 4781069 -30126501 + THE1B LTR MaLR 1 364 0 11364 90 17 1 chr21 4781069 4782624 -30124946 + THE1B-int LTR MaLR 1 1580 0 2114 141 30 28 chr21 4782624 4782987 -30124583 + THE1B LTR MaLR 1 364 0 238 342 40 33 chr21 4783316 4783468 -30124102 - MER5A DNA MER1_type -21 168 16 209 108 27 0 chr21 4784142 4784179 -30123391 + (TATG)n Simple_repeat Simple_repeat 3 40 0 226 371 89 34 chr21 4784568 4784918 -30122652 + L2 LINE L2 2303 2671 -643 27 73 0 0 chr21 4785034 4785089 -30122481 + AT_rich Low_complexity Low_complexity 1 55 0 186 363 52 36 chr21 4785214 4785407 -30122163 + L2 LINE L2 2807 3002 -270 1721 172 3 34 chr21 4786282 4786602 -30120968 + AluJb SINE Alu 1 310 -2 207 301 14 0 chr21 4787595 4787668 -30119902 - L2 LINE L2 -252 3061 2988 318 278 95 53 chr21 4787853 4788022 -30119548 - L2 LINE L2 -106 3207 3032 246 315 45 36 chr21 4788587 4788698 -30118872 - L2 LINE L2 -1 3312 3201 39 60 0 0 chr21 4789978 4790045 -30117525 + AT_rich Low_complexity Low_complexity 1 67 0 315 231 48 39 chr21 4790471 4790575 -30116995 + MIR SINE MIR 47 151 -111 1591 142 31 3 chr21 4790703 4790991 -30116579 - L1MA3 LINE L1 0 6305 6010 760 203 0 0 chr21 4791041 4791169 -30116401 - FLAM_C SINE Alu -11 132 5 246 286 135 8 chr21 4791397 4791530 -30116040 + L2 LINE L2 3085 3234 -79 24 0 0 0 chr21 4791543 4791567 -30116003 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr21 4792500 4792521 -30115049 + AT_rich Low_complexity Low_complexity 1 21 0 1398 30 0 12 chr21 4793583 4793751 -30113819 - AluY SINE Alu -7 304 139 21 0 0 0 chr21 4794682 4794703 -30112867 + AT_rich Low_complexity Low_complexity 1 21 0 8943 145 24 20 chr21 4795046 4797770 -30109800 - L1MA1 LINE L1 -6 6296 3566 4000 105 30 49 chr21 4797770 4798466 -30109104 - L1PB1 LINE L1 0 7570 6888 12490 202 14 12 chr21 4798518 4799587 -30107983 - L1PB1 LINE L1 -672 6898 5833 702 35 0 0 chr21 4799587 4799672 -30107898 + (TTTTA)n Simple_repeat Simple_repeat 3 87 0 12490 202 14 12 chr21 4799672 4799691 -30107879 - L1PB1 LINE L1 -1737 5833 5816 2256 71 4 0 chr21 4799691 4800008 -30107562 - AluY SINE Alu 0 318 1 12490 202 14 12 chr21 4800008 4801946 -30105624 - L1PB1 LINE L1 -1754 5816 3863 238 69 86 0 chr21 4801967 4802025 -30105545 + (TA)n Simple_repeat Simple_repeat 2 64 0 482 209 6 49 chr21 4802031 4802194 -30105376 - L1PB1 LINE L1 -3653 3912 3757 272 85 0 0 chr21 4802222 4802269 -30105301 - LTR66 LTR ERVL -392 218 172 509 159 40 17 chr21 4802315 4802491 -30105079 + (TA)n Simple_repeat Simple_repeat 1 180 0 1670 121 11 10 chr21 4802491 4803167 -30104403 - L1PB1 LINE L1 -3689 3876 3141 5556 142 38 8 chr21 4803181 4804114 -30103456 - L1PB1 LINE L1 -5049 2516 1556 273 286 0 0 chr21 4804370 4804433 -30103137 + MIR3 SINE MIR 125 187 -21 22 0 0 0 chr21 4804586 4804608 -30102962 + AT_rich Low_complexity Low_complexity 1 22 0 1787 154 27 10 chr21 4804775 4805068 -30102502 - AluSx SINE Alu -10 302 5 2069 123 3 16 chr21 4806824 4807133 -30100437 - AluSg SINE Alu -5 305 1 285 320 51 27 chr21 4807515 4807771 -30099799 - L1ME4a LINE L1 -104 6017 5756 189 333 53 13 chr21 4808181 4808256 -30099314 + L2 LINE L2 3125 3202 -70 2130 121 0 3 chr21 4808326 4808623 -30098947 + AluSx SINE Alu 1 296 -16 180 0 0 0 chr21 4809579 4809599 -30097971 + (CAA)n Simple_repeat Simple_repeat 2 21 0 311 133 0 17 chr21 4809912 4809972 -30097598 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 1130 244 42 53 chr21 4809983 4810344 -30097226 + MLT1A2 LTR MaLR 3 359 -15 464 254 8 8 chr21 4810473 4810603 -30096967 - L1MC4a LINE L1 -247 7561 7432 191 323 0 0 chr21 4810636 4810698 -30096872 + L2 LINE L2 3248 3309 -4 292 391 6 11 chr21 4811374 4811553 -30096017 + (TG)n Simple_repeat Simple_repeat 1 178 0 196 118 59 0 chr21 4811613 4811647 -30095923 - L2 LINE L2 -956 2358 2323 2081 107 7 20 chr21 4811663 4811963 -30095607 + AluSg SINE Alu 1 296 -14 225 316 17 34 chr21 4813965 4814082 -30093488 - L2 LINE L2 -927 2387 2273 21 0 0 0 chr21 4814354 4814375 -30093195 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr21 4815359 4815401 -30092169 + AT_rich Low_complexity Low_complexity 1 42 0 2261 213 14 24 chr21 4815608 4816162 -30091408 - L1PB1 LINE L1 -762 5384 4836 5132 100 20 18 chr21 4816157 4816944 -30090626 + L1PB1 LINE L1 5361 6149 -2 183 100 0 0 chr21 4817328 4817358 -30090212 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 988 186 37 11 chr21 4818541 4818729 -30088841 - MSTD LTR MaLR 0 396 204 23 33 0 0 chr21 4820547 4820577 -30086993 + AT_rich Low_complexity Low_complexity 1 30 0 303 93 0 0 chr21 4820867 4820910 -30086660 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 2176 112 0 7 chr21 4821140 4821444 -30086126 + AluSx SINE Alu 11 312 0 180 0 0 0 chr21 4823535 4823555 -30084015 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2091 147 0 0 chr21 4826025 4826331 -30081239 - AluSx SINE Alu -4 308 3 39 50 0 0 chr21 4826453 4826513 -30081057 + AT_rich Low_complexity Low_complexity 1 60 0 270 95 0 0 chr21 4827129 4827171 -30080399 + (TG)n Simple_repeat Simple_repeat 1 42 0 296 282 14 0 chr21 4827410 4827481 -30080089 + tRNA-Ile-ATT tRNA tRNA 1 72 -5 21 0 0 0 chr21 4828327 4828348 -30079222 + AT_rich Low_complexity Low_complexity 1 21 0 6761 62 10 0 chr21 4829152 4830035 -30077535 - L1PA6 LINE L1 0 6154 5263 1133 151 0 16 chr21 4830378 4830564 -30077006 - AluJb SINE Alu -45 267 85 23 0 0 0 chr21 4831395 4831418 -30076152 + AT_rich Low_complexity Low_complexity 1 23 0 5467 181 38 29 chr21 4831709 4833952 -30073618 - L1PA16 LINE L1 0 6166 3916 207 167 0 0 chr21 4834878 4834920 -30072650 + (CATA)n Simple_repeat Simple_repeat 2 43 0 542 236 0 56 chr21 4834959 4835103 -30072467 - FLAM_A SINE Alu -6 136 1 234 222 30 40 chr21 4835944 4836043 -30071527 + A-rich Low_complexity Low_complexity 5 102 0 260 151 55 0 chr21 4836326 4836399 -30071171 + (TA)n Simple_repeat Simple_repeat 1 77 0 27 0 0 0 chr21 4836399 4836426 -30071144 + AT_rich Low_complexity Low_complexity 1 27 0 653 192 51 0 chr21 4836455 4836611 -30070959 - L1 LINE L1 -1710 4436 4273 22 36 0 55 chr21 4838152 4838207 -30069363 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 4838445 4838483 -30069087 + AT_rich Low_complexity Low_complexity 1 38 0 369 0 0 0 chr21 4838734 4838775 -30068795 + (TG)n Simple_repeat Simple_repeat 2 42 0 2398 67 0 0 chr21 4838775 4839061 -30068509 - AluY SINE Alu -22 289 1 544 28 99 0 chr21 4839206 4839277 -30068293 + L1PA10 LINE L1 5801 5878 -290 1848 136 0 0 chr21 4839541 4839806 -30067764 - AluSq SINE Alu -48 265 1 1206 251 74 3 chr21 4840246 4840557 -30067013 + MER58B DNA MER1_type 7 339 -2 3496 195 76 59 chr21 4840757 4841795 -30065775 - L1MD1 LINE L1 -5 6631 5577 1266 226 67 6 chr21 4841817 4842158 -30065412 - MER34B LTR ERV1 -20 545 184 296 184 9 138 chr21 4842189 4842298 -30065272 - MER34B LTR ERV1 -466 99 5 736 244 30 0 chr21 4842304 4842537 -30065033 - L1MD1 LINE L1 -965 5575 5336 240 149 0 0 chr21 4842556 4842603 -30064967 + (TC)n Simple_repeat Simple_repeat 1 47 0 314 261 0 14 chr21 4842604 4842673 -30064897 - L1MD1 LINE L1 -1208 5332 5265 2156 96 0 4 chr21 4842678 4842959 -30064611 + AluSx SINE Alu 17 296 -16 422 235 0 76 chr21 4842959 4843091 -30064479 - L1MD1 LINE L1 -1268 5272 5151 25 51 0 0 chr21 4843113 4843152 -30064418 + AT_rich Low_complexity Low_complexity 1 39 0 889 279 59 3 chr21 4843187 4843545 -30064025 - L1MD1 LINE L1 -1406 5134 4757 1214 231 0 38 chr21 4843542 4843858 -30063712 - L1MD1 LINE L1 -2057 4483 4180 8775 101 26 8 chr21 4843860 4845052 -30062518 - HSMAR1 DNA Mariner -1 1286 70 2391 73 0 25 chr21 4845052 4845369 -30062201 - AluY SINE Alu -2 309 1 8775 101 26 8 chr21 4845369 4845410 -30062160 - HSMAR1 DNA Mariner -1217 70 31 6587 241 56 49 chr21 4845425 4845626 -30061944 - L1MD1 LINE L1 -2365 4175 3977 2294 108 0 0 chr21 4845626 4845933 -30061637 + AluSq SINE Alu 1 307 -6 6587 241 56 49 chr21 4845933 4846023 -30061547 - L1MD1 LINE L1 -2563 3977 3889 1784 172 0 23 chr21 4846023 4846331 -30061239 - AluJo SINE Alu -11 301 1 6587 241 56 49 chr21 4846331 4847275 -30060295 - L1MD1 LINE L1 -2651 3889 2953 2336 88 7 0 chr21 4847275 4847583 -30059987 + AluSg SINE Alu 1 310 0 6587 241 56 49 chr21 4847583 4850400 -30057170 - L1MD1 LINE L1 -3587 2953 3 362 227 23 11 chr21 4850696 4850784 -30056786 + L2 LINE L2 3225 3313 0 256 250 0 0 chr21 4852784 4852864 -30054706 + T-rich Low_complexity Low_complexity 1 80 0 243 0 0 0 chr21 4853287 4853314 -30054256 + (A)n Simple_repeat Simple_repeat 1 27 0 218 104 0 42 chr21 4853328 4853376 -30054194 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 426 274 131 11 chr21 4858143 4858318 -30049252 + L2 LINE L2 3118 3313 0 24 53 0 0 chr21 4858828 4858866 -30048704 + AT_rich Low_complexity Low_complexity 1 38 0 2073 126 3 3 chr21 4859909 4860210 -30047360 + AluSx SINE Alu 3 303 -9 219 139 0 0 chr21 4860797 4860833 -30046737 + (GGGA)n Simple_repeat Simple_repeat 1 36 0 4740 6 0 0 chr21 4862217 4862751 -30044819 - L1HS LINE L1 0 6155 5622 296 298 83 0 chr21 4863082 4863203 -30044367 - MIR3 SINE MIR -28 180 50 2048 115 10 0 chr21 4863874 4864169 -30043401 + AluSx SINE Alu 8 305 -7 898 209 17 0 chr21 4865650 4865827 -30041743 + MER3 DNA MER1_type 30 209 0 207 224 17 17 chr21 4865976 4866034 -30041536 + T-rich Low_complexity Low_complexity 2 59 0 186 0 0 39 chr21 4866313 4866339 -30041231 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 2126 113 0 0 chr21 4866339 4866621 -30040949 - AluSg SINE Alu -28 282 1 32 43 0 0 chr21 4866879 4866925 -30040645 + AT_rich Low_complexity Low_complexity 1 46 0 703 227 78 0 chr21 4867079 4867233 -30040337 + FRAM SINE Alu 1 165 -11 22 56 0 0 chr21 4867418 4867454 -30040116 + AT_rich Low_complexity Low_complexity 1 36 0 2112 163 52 45 chr21 4867481 4867696 -30039874 - Tigger2 DNA MER2_type 0 2718 2506 2193 96 3 26 chr21 4867696 4867999 -30039571 + AluSp SINE Alu 1 296 -17 2112 163 52 45 chr21 4867999 4868225 -30039345 - Tigger2 DNA MER2_type -212 2506 2274 424 188 0 0 chr21 4868216 4868285 -30039285 - Tigger2 DNA MER2_type -2649 69 1 304 321 100 38 chr21 4869368 4869608 -30037962 + MIR SINE MIR 7 261 -1 207 0 0 0 chr21 4869721 4869744 -30037826 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 21 36 0 0 chr21 4870401 4870429 -30037141 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr21 4870580 4870601 -30036969 + AT_rich Low_complexity Low_complexity 1 21 0 2248 103 3 0 chr21 4871077 4871377 -30036193 - AluSx SINE Alu -11 301 1 313 227 0 0 chr21 4871648 4871723 -30035847 - MER53 DNA DNA -12 177 103 31 26 0 0 chr21 4871914 4871952 -30035618 + AT_rich Low_complexity Low_complexity 1 38 0 2303 93 0 3 chr21 4872876 4873188 -30034382 + AluSq SINE Alu 1 311 -2 1487 74 15 0 chr21 4873756 4873958 -30033612 - AluY SINE Alu -10 301 97 218 330 99 73 chr21 4874408 4874531 -30033039 + MIR SINE MIR 23 141 -121 2648 39 0 0 chr21 4874531 4874841 -30032729 + AluY SINE Alu 2 311 0 218 330 99 73 chr21 4874841 4874950 -30032620 + MIR SINE MIR 141 261 -1 246 62 0 0 chr21 4875713 4875745 -30031825 + (CTTA)n Simple_repeat Simple_repeat 2 33 0 1984 161 0 0 chr21 4876093 4876397 -30031173 + AluSx SINE Alu 5 308 -4 293 138 155 0 chr21 4876402 4876460 -30031110 + MIR3 SINE MIR 114 180 -28 1071 189 0 11 chr21 4876467 4876657 -30030913 + AluSg/x SINE Alu 110 297 -13 334 338 153 6 chr21 4876957 4877114 -30030456 + MIR SINE MIR 31 210 -52 294 326 41 20 chr21 4878876 4878974 -30028596 - MIR SINE MIR -150 112 13 185 237 171 13 chr21 4880045 4880121 -30027449 - MIR SINE MIR -126 136 49 409 314 115 13 chr21 4880137 4880293 -30027277 - L2 LINE L2 0 3272 3101 2047 96 58 0 chr21 4881213 4881504 -30026066 - AluSx SINE Alu -4 308 1 1978 113 7 0 chr21 4881939 4882245 -30025325 + AluSq SINE Alu 2 309 0 778 167 0 8 chr21 4883296 4883428 -30024142 + FLAM_C SINE Alu 1 131 -2 24 32 0 0 chr21 4883967 4883998 -30023572 + AT_rich Low_complexity Low_complexity 1 31 0 815 107 21 43 chr21 4888618 4888758 -30018812 + L1MA3 LINE L1 6169 6305 0 2100 100 0 0 chr21 4890552 4890833 -30016737 - AluY SINE Alu -30 281 1 280 336 82 16 chr21 4891196 4891318 -30016252 + MIR SINE MIR 34 163 -99 24 0 0 0 chr21 4892563 4892587 -30014983 + AT_rich Low_complexity Low_complexity 1 24 0 207 69 0 0 chr21 4892740 4892769 -30014801 + (TC)n Simple_repeat Simple_repeat 2 30 0 288 70 0 0 chr21 4892789 4892832 -30014738 + (CA)n Simple_repeat Simple_repeat 1 43 0 1979 86 6 60 chr21 4893083 4893434 -30014136 + AluSg SINE Alu 1 310 0 1984 94 43 0 chr21 4893454 4893730 -30013840 + AluSc SINE Alu 1 288 -21 22 56 0 0 chr21 4893915 4893951 -30013619 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 4894423 4894461 -30013109 + AT_rich Low_complexity Low_complexity 1 38 0 558 166 34 40 chr21 4895142 4895317 -30012253 + (TATATG)n Simple_repeat Simple_repeat 3 176 0 486 184 39 39 chr21 4895342 4895521 -30012049 + (TATATG)n Simple_repeat Simple_repeat 2 180 0 21 0 0 0 chr21 4899352 4899373 -30008197 + AT_rich Low_complexity Low_complexity 1 21 0 2180 122 3 0 chr21 4900048 4900351 -30007219 - AluSx SINE Alu -8 304 1 589 337 16 5 chr21 4900554 4900744 -30006826 - MIR3 SINE MIR -12 196 5 1993 124 37 0 chr21 4901047 4901346 -30006224 - AluSx SINE Alu -2 310 1 330 45 0 0 chr21 4902145 4902189 -30005381 + (CA)n Simple_repeat Simple_repeat 2 45 0 2118 111 3 3 chr21 4902242 4902548 -30005022 + AluSg SINE Alu 1 306 -4 213 65 0 0 chr21 4902626 4902657 -30004913 + (A)n Simple_repeat Simple_repeat 1 31 0 644 237 98 21 chr21 4903146 4903340 -30004230 + MER3 DNA MER1_type 1 209 0 274 283 20 10 chr21 4904697 4904796 -30002774 + CT-rich Low_complexity Low_complexity 1 100 0 31 44 0 0 chr21 4905544 4905589 -30001981 + AT_rich Low_complexity Low_complexity 1 45 0 2484 25 0 0 chr21 4913548 4913830 -29993740 + AluY SINE Alu 28 309 -2 393 267 7 82 chr21 4913927 4914062 -29993508 + MLT1K LTR MaLR 273 397 -191 432 260 60 100 chr21 4914188 4914457 -29993113 - MLT1K LTR MaLR -162 426 169 185 94 31 0 chr21 4915086 4915118 -29992452 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 1868 89 4 0 chr21 4916994 4917242 -29990328 + AluSp SINE Alu 65 313 0 2167 99 13 0 chr21 4917444 4917748 -29989822 - AluY SINE Alu -3 308 1 273 239 97 69 chr21 4918176 4918316 -29989254 - MER5A DNA MER1_type -26 163 7 367 289 64 43 chr21 4918972 4919159 -29988411 - MLT1J LTR MaLR -255 256 66 21 36 0 0 chr21 4919611 4919639 -29987931 + AT_rich Low_complexity Low_complexity 1 28 0 229 359 8 8 chr21 4920011 4920128 -29987442 - L2 LINE L2 -713 2601 2485 2038 101 26 0 chr21 4921213 4921481 -29986089 + AluSx SINE Alu 1 275 -37 237 132 0 0 chr21 4924722 4924760 -29982810 + (TG)n Simple_repeat Simple_repeat 1 38 0 202 259 62 12 chr21 4925010 4925091 -29982479 + L2 LINE L2 3188 3272 0 528 314 66 38 chr21 4925221 4925508 -29982062 + L2 LINE L2 2576 2870 -444 601 250 141 59 chr21 4925559 4925879 -29981691 + L2 LINE L2 2968 3313 0 1119 201 5 19 chr21 4926178 4926392 -29981178 - MER58A DNA MER1_type -13 211 1 305 53 0 0 chr21 4926677 4926715 -29980855 + MER63 DNA MER1_type 1 38 -1023 402 182 0 116 chr21 4928113 4928234 -29979336 - L1MC5 LINE L1 -19 7942 7836 263 188 0 58 chr21 4928239 4928308 -29979262 - L1MC5 LINE L1 -124 7837 7773 661 284 89 16 chr21 4928308 4928565 -29979005 - L1MC5 LINE L1 -428 7533 7258 200 111 28 0 chr21 4928566 4928602 -29978968 + A-rich Low_complexity Low_complexity 3 39 0 1948 143 4 0 chr21 4930082 4930396 -29977174 + AluSx SINE Alu 3 317 0 2692 172 27 19 chr21 4930522 4931085 -29976485 - L1MB1 LINE L1 -1 6167 5601 858 139 14 0 chr21 4931085 4931220 -29976350 - L1PB3 LINE L1 -2 6152 6007 21 0 0 0 chr21 4931222 4931243 -29976327 + AT_rich Low_complexity Low_complexity 1 21 0 2008 106 3 46 chr21 4931246 4931549 -29976021 - AluSq SINE Alu -23 290 1 1753 186 25 0 chr21 4931549 4931910 -29975660 - L1MB1 LINE L1 -727 5607 5238 2862 14 0 0 chr21 4932137 4932483 -29975087 - L1PA3 LINE L1 -831 5315 4970 7097 29 0 0 chr21 4932483 4933311 -29974259 + L1PA3 LINE L1 5319 6152 -3 989 61 0 0 chr21 4934097 4934212 -29973358 - AluY SINE Alu -175 136 22 1282 114 6 0 chr21 4934232 4934408 -29973162 - AluSg/x SINE Alu -10 300 124 2484 69 0 0 chr21 4934408 4934713 -29972857 - AluY SINE Alu -6 305 1 412 295 101 40 chr21 4934713 4935003 -29972567 - L3 LINE CR1 -3 1574 1230 434 324 105 44 chr21 4935219 4935431 -29972139 - MER68 LTR ERV1 -12 550 314 1598 195 89 22 chr21 4935431 4935800 -29971770 - MSTD LTR MaLR -2 394 1 434 324 105 44 chr21 4935800 4935883 -29971687 - MER68 LTR ERV1 -248 314 237 207 265 137 49 chr21 4936571 4936673 -29970897 - L2 LINE L2 0 3272 3162 1140 239 83 57 chr21 4937238 4937695 -29969875 - L2 LINE L2 -4 3309 2841 2197 41 0 11 chr21 4937734 4938001 -29969569 - AluY SINE Alu -15 296 33 447 206 32 13 chr21 4938056 4938223 -29969347 + MER33 DNA MER1_type 1 214 -110 3222 186 63 27 chr21 4938237 4939013 -29968557 - L1MD2 LINE L1 0 6359 5556 284 140 0 18 chr21 4939013 4939070 -29968500 + MER33 DNA MER1_type 234 289 -35 705 287 25 5 chr21 4939264 4939466 -29968104 + MIR SINE MIR 1 206 -56 2533 111 5 19 chr21 4939574 4939943 -29967627 - THE1B LTR MaLR 0 364 1 351 309 16 8 chr21 4939944 4940067 -29967503 + L2 LINE L2 3165 3288 -25 216 0 0 0 chr21 4940075 4940099 -29967471 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 342 67 0 0 chr21 4940689 4940734 -29966836 + (CA)n Simple_repeat Simple_repeat 2 46 0 615 310 65 4 chr21 4941366 4941598 -29965972 - MIR SINE MIR -8 254 9 25 51 0 0 chr21 4942033 4942072 -29965498 + AT_rich Low_complexity Low_complexity 1 39 0 23 0 0 0 chr21 4943085 4943108 -29964462 + AT_rich Low_complexity Low_complexity 1 23 0 768 225 39 0 chr21 4943824 4944006 -29963564 - MER5A DNA MER1_type 0 189 1 855 164 0 0 chr21 4944119 4944247 -29963323 - FLAM_C SINE Alu -4 129 2 2186 120 0 0 chr21 4944346 4944647 -29962923 + AluSg SINE Alu 1 301 -9 2423 80 0 0 chr21 4945117 4945418 -29962152 - AluSg SINE Alu -9 301 1 587 275 6 34 chr21 4945520 4945698 -29961872 - MER5B DNA MER1_type -5 173 1 2082 117 17 0 chr21 4945784 4946083 -29961487 + AluSp SINE Alu 1 304 -9 204 258 15 30 chr21 4946307 4946373 -29961197 - L2 LINE L2 -16 3256 3192 21 0 0 0 chr21 4946700 4946721 -29960849 + AT_rich Low_complexity Low_complexity 1 21 0 2750 70 120 0 chr21 4948884 4949284 -29958286 + LTR7 LTR ERV1 1 448 -2 278 333 30 10 chr21 4950112 4950211 -29957359 - L2 LINE L2 -10 3303 3203 208 289 62 70 chr21 4950509 4950637 -29956933 - L2 LINE L2 -421 2893 2767 22 0 0 0 chr21 4952047 4952069 -29955501 + AT_rich Low_complexity Low_complexity 1 22 0 1377 227 64 6 chr21 4952877 4953221 -29954349 + MLT1A1 LTR MaLR 1 364 -1 535 292 26 31 chr21 4953530 4953722 -29953848 + MLT1K LTR MaLR 69 259 -329 184 232 116 14 chr21 4953921 4953990 -29953580 + L2 LINE L2 2714 2789 -525 892 195 53 0 chr21 4954365 4954534 -29953036 + MER5A DNA MER1_type 1 178 -11 442 279 85 8 chr21 4955102 4955231 -29952339 + MIR SINE MIR 12 150 -112 255 348 80 9 chr21 4956018 4956130 -29951440 - L2 LINE L2 -21 3292 3173 2412 66 3 0 chr21 4956263 4956565 -29951005 + AluY SINE Alu 1 303 -8 1758 199 18 22 chr21 4956723 4957184 -29950386 + LTR2B LTR ERV1 1 490 0 24 0 0 0 chr21 4957994 4958018 -29949552 + AT_rich Low_complexity Low_complexity 1 24 0 238 377 60 36 chr21 4958103 4958355 -29949215 + L2 LINE L2 3015 3272 0 267 31 0 0 chr21 4958615 4958647 -29948923 + (TG)n Simple_repeat Simple_repeat 2 33 0 2262 106 0 0 chr21 4958755 4959056 -29948514 - AluSx SINE Alu -11 301 1 2261 118 0 29 chr21 4959253 4959600 -29947970 - MER1B DNA MER1_type 0 337 1 21 36 0 0 chr21 4960150 4960178 -29947392 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr21 4960339 4960381 -29947189 + AT_rich Low_complexity Low_complexity 1 42 0 251 259 0 0 chr21 4960914 4960972 -29946598 + (TG)n Simple_repeat Simple_repeat 2 59 0 1121 256 6 31 chr21 4961264 4961588 -29945982 - L1ME2 LINE L1 -9 6224 5909 255 255 0 20 chr21 4961589 4961640 -29945930 + MLT1E1 LTR MaLR 1 50 -543 1662 256 51 35 chr21 4961688 4962180 -29945390 + MLT1E1 LTR MaLR 148 647 -7 1212 282 40 39 chr21 4962223 4962763 -29944807 - MLT1E LTR MaLR 0 593 1 2253 245 65 37 chr21 4962764 4963476 -29944094 - L1ME2 LINE L1 -356 5877 5090 21 0 0 0 chr21 4963476 4963497 -29944073 + AT_rich Low_complexity Low_complexity 1 21 0 2253 245 65 37 chr21 4963497 4964095 -29943475 - L1ME2 LINE L1 -1143 5090 4510 2712 244 78 27 chr21 4964147 4965176 -29942394 - L1ME2 LINE L1 -1788 4427 3347 1373 286 62 55 chr21 4965204 4966229 -29941341 - L1ME2 LINE L1 -5007 1389 357 894 184 8 115 chr21 4969180 4969424 -29938146 + MER20 DNA MER1_type 1 218 -1 261 146 90 0 chr21 4970339 4970406 -29937164 - L1MD3 LINE L1 -4 7990 7708 1130 197 20 7 chr21 4970407 4970813 -29936757 - L1MC3 LINE L1 -115 7670 7235 27 29 0 0 chr21 4970838 4970872 -29936698 + AT_rich Low_complexity Low_complexity 1 34 0 2439 72 3 0 chr21 4971464 4971771 -29935799 + AluSc SINE Alu 2 309 0 22 0 0 0 chr21 4971970 4971992 -29935578 + AT_rich Low_complexity Low_complexity 1 22 0 328 319 109 77 chr21 4972648 4972911 -29934659 + L1ME3 LINE L1 441 725 -5394 5331 73 1 6 chr21 4972911 4973620 -29933950 + L1PA8 LINE L1 5467 6172 0 328 319 109 77 chr21 4973620 4973786 -29933784 + L1ME3 LINE L1 725 884 -5235 4317 93 37 2 chr21 4975500 4976124 -29931446 + L1PA13 LINE L1 5509 6154 -9 423 0 0 0 chr21 4976124 4976171 -29931399 + (CA)n Simple_repeat Simple_repeat 2 48 0 628 270 22 39 chr21 4976280 4976510 -29931060 - L2 LINE L2 -1 3312 3087 201 224 0 75 chr21 4976662 4976729 -29930841 - MIR SINE MIR -12 250 189 953 250 67 58 chr21 4976780 4977316 -29930254 + L1ME3 LINE L1 4364 4904 -1225 1695 291 29 13 chr21 4977785 4978152 -29929418 + L1ME3 LINE L1 5472 5855 -290 1924 106 7 3 chr21 4978152 4978472 -29929098 + AluSg SINE Alu 1 321 0 1695 291 29 13 chr21 4978472 4978715 -29928855 + L1ME3 LINE L1 5855 6093 -52 819 253 60 29 chr21 4978790 4978948 -29928622 + L1MC5 LINE L1 7533 7685 -276 2327 63 0 66 chr21 4978948 4979298 -29928272 - L1PA7 LINE L1 -7 6147 5821 819 253 60 29 chr21 4979298 4979522 -29928048 + L1MC5 LINE L1 7685 7927 -34 1670 135 15 0 chr21 4979541 4979801 -29927769 + L1PA16 LINE L1 5894 6157 -9 231 295 32 21 chr21 4980077 4980172 -29927398 + L1ME LINE L1 1236 1331 -5095 302 248 92 0 chr21 4980407 4980516 -29927054 + L1ME LINE L1 1642 1760 -4668 843 288 95 26 chr21 4980809 4981348 -29926222 + L1ME LINE L1 2304 2839 -3587 652 336 55 38 chr21 4981436 4981853 -29925717 + L1ME LINE L1 3005 3428 -2998 859 239 35 44 chr21 4982020 4982338 -29925232 + L1ME LINE L1 3386 3700 -2726 7266 50 3 0 chr21 4982383 4983280 -29924290 - L1PA6 LINE L1 -1 6153 5254 304 280 0 0 chr21 4983295 4983388 -29924182 + L1ME LINE L1 3762 3854 -2572 486 256 30 0 chr21 4983377 4983510 -29924060 + L1ME LINE L1 5741 5877 -565 21 0 0 0 chr21 4984071 4984092 -29923478 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 4984756 4984784 -29922786 + AT_rich Low_complexity Low_complexity 1 28 0 2427 59 0 0 chr21 4985662 4985967 -29921603 + AluY SINE Alu 1 305 -6 526 246 8 45 chr21 4986154 4986288 -29921282 - L2 LINE L2 -8 3305 3177 211 282 122 23 chr21 4986348 4986479 -29921091 - L2 LINE L2 -462 2852 2709 24 0 0 0 chr21 4986860 4986884 -29920686 + AT_rich Low_complexity Low_complexity 1 24 0 2098 217 67 23 chr21 4986980 4987972 -29919598 + L1MD3 LINE L1 6583 7844 -151 466 202 0 30 chr21 4987974 4988073 -29919497 + L1MD3 LINE L1 7899 7994 -1 373 224 0 0 chr21 4990684 4990751 -29916819 + MER69 DNA AcHobo 5 71 -2455 437 271 7 14 chr21 4990754 4990898 -29916672 + MER69 DNA AcHobo 2384 2526 0 225 0 0 0 chr21 4990935 4990960 -29916610 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 302 43 22 chr21 4991185 4991324 -29916246 + L1 LINE L1 2266 2407 -3739 1990 174 14 11 chr21 4991324 4991675 -29915895 - MLT1A1 LTR MaLR 0 365 14 578 311 87 28 chr21 4992125 4992447 -29915123 + L1MEd LINE L1 288 628 -5491 554 222 21 109 chr21 4994672 4994911 -29912659 - MER20 DNA MER1_type 0 219 2 510 295 16 0 chr21 4994990 4995119 -29912451 - MIR SINE MIR -110 152 22 23 33 0 0 chr21 4997497 4997527 -29910043 + AT_rich Low_complexity Low_complexity 1 30 0 27 73 0 0 chr21 4997566 4997621 -29909949 + AT_rich Low_complexity Low_complexity 1 55 0 1813 240 84 22 chr21 4998278 4998438 -29909132 - MLT1E3 LTR MaLR 0 624 475 2523 111 8 3 chr21 4998438 4998800 -29908770 + THE1B LTR MaLR 1 364 0 1813 240 84 22 chr21 4998800 4999212 -29908358 - MLT1E3 LTR MaLR -149 475 57 1606 135 60 83 chr21 5000009 5000393 -29907177 - THE1C LTR MaLR 0 375 1 225 0 0 0 chr21 5000497 5000522 -29907048 + (TA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr21 5000737 5000766 -29906804 + AT_rich Low_complexity Low_complexity 1 29 0 261 57 0 0 chr21 5001065 5001100 -29906470 + (TC)n Simple_repeat Simple_repeat 1 35 0 433 253 39 66 chr21 5002003 5002185 -29905385 + MER5B DNA MER1_type 1 177 -1 481 304 58 23 chr21 5002193 5002364 -29905206 + MER5B DNA MER1_type 2 178 0 21 57 0 0 chr21 5004464 5004499 -29903071 + AT_rich Low_complexity Low_complexity 1 35 0 1667 181 4 0 chr21 5005194 5005498 -29902072 + AluSx SINE Alu 1 305 0 2443 59 0 0 chr21 5005586 5005891 -29901679 - AluY SINE Alu 0 311 7 1557 178 105 11 chr21 5005930 5006312 -29901258 + L1MC3 LINE L1 7368 7785 0 925 210 26 0 chr21 5006608 5006803 -29900767 + MER3 DNA MER1_type 1 200 -9 2498 46 3 3 chr21 5007320 5007624 -29899946 + AluY SINE Alu 1 304 -7 2030 306 94 50 chr21 5007882 5009019 -29898551 + L2 LINE L2 88 1274 -2040 316 315 39 0 chr21 5009246 5009373 -29898197 + L2 LINE L2 1534 1665 -1649 422 257 40 20 chr21 5009409 5009557 -29898013 + L2 LINE L2 2983 3133 -180 1605 149 68 49 chr21 5011822 5012190 -29895380 - THE1C LTR MaLR 0 375 1 9255 142 15 38 chr21 5012190 5013804 -29893766 - THE1C-int LTR MaLR 0 1580 4 1649 169 60 35 chr21 5013807 5014173 -29893397 - THE1C LTR MaLR 0 375 1 2096 123 0 0 chr21 5014802 5015114 -29892456 + AluSx SINE Alu 1 312 0 2047 243 39 29 chr21 5017033 5018035 -29889535 - L1ME3 LINE L1 -212 6186 5115 451 270 105 26 chr21 5018065 5018217 -29889353 - L1ME3 LINE L1 -1329 5053 4890 983 282 41 0 chr21 5018220 5018585 -29888985 - L1ME3 LINE L1 -1497 4885 4506 389 300 159 36 chr21 5018587 5018807 -29888763 - L1ME3 LINE L1 -4843 1541 1295 922 302 79 59 chr21 5018880 5019365 -29888205 - L1ME3 LINE L1 -5215 1348 874 2424 74 0 3 chr21 5019365 5019677 -29887893 - AluY SINE Alu 0 311 1 922 302 79 59 chr21 5019677 5020245 -29887325 - L1ME3 LINE L1 -5689 874 274 1278 251 16 9 chr21 5020842 5021225 -29886345 + L1ME LINE L1 5440 5774 -392 4343 43 2 2 chr21 5021229 5021764 -29885806 - L1PA5 LINE L1 -4 6150 5616 24 32 0 0 chr21 5022361 5022392 -29885178 + AT_rich Low_complexity Low_complexity 1 31 0 26 30 0 0 chr21 5023297 5023330 -29884240 + AT_rich Low_complexity Low_complexity 1 33 0 2209 105 0 10 chr21 5024340 5024634 -29882936 - AluSx SINE Alu -21 291 1 222 349 31 39 chr21 5024732 5024861 -29882709 - MIR SINE MIR -118 144 17 1770 122 4 19 chr21 5026895 5027158 -29880412 - THE1B LTR MaLR -105 259 1 1961 106 4 8 chr21 5027328 5027592 -29879978 + AluSq SINE Alu 36 298 -15 516 105 12 0 chr21 5027612 5027698 -29879872 + L1PA13 LINE L1 6076 6162 -1 23 0 0 0 chr21 5027718 5027741 -29879829 + AT_rich Low_complexity Low_complexity 1 23 0 1760 197 27 49 chr21 5028993 5029182 -29878388 - Charlie4a DNA MER1_type -1457 504 312 1695 185 23 3 chr21 5029182 5029484 -29878086 - AluJb SINE Alu -4 308 1 1760 197 27 49 chr21 5029484 5029807 -29877763 - Charlie4a DNA MER1_type -1649 312 3 2761 87 42 10 chr21 5030052 5030456 -29877114 - L1PA8 LINE L1 0 6172 5756 1905 73 4 0 chr21 5030457 5030704 -29876866 + L1PA8 LINE L1 5520 5767 -405 21 36 0 0 chr21 5032045 5032073 -29875497 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr21 5032080 5032101 -29875469 + (TA)n Simple_repeat Simple_repeat 2 22 0 345 239 0 0 chr21 5032186 5032257 -29875313 - MLT1L LTR MaLR -381 234 164 466 283 17 0 chr21 5032704 5032824 -29874746 + L2 LINE L2 3192 3313 0 4513 195 26 1 chr21 5034351 5035325 -29872245 - L1 LINE L1 -1344 4802 3805 4940 129 20 12 chr21 5035297 5036106 -29871464 + L1PA16 LINE L1 5336 6150 -16 41 48 0 0 chr21 5036107 5036169 -29871401 + AT_rich Low_complexity Low_complexity 1 62 0 996 151 6 6 chr21 5036831 5036990 -29870580 + U1 snRNA snRNA 7 165 0 346 212 97 109 chr21 5037108 5037273 -29870297 + L1ME4a LINE L1 5725 5887 -234 280 267 48 32 chr21 5037277 5037464 -29870106 + L1ME4a LINE L1 5928 6117 -4 6160 57 5 1 chr21 5038319 5039104 -29868466 + L1PA7 LINE L1 5367 6154 0 615 321 5 16 chr21 5039605 5039798 -29867772 + MIR SINE MIR 12 202 -60 211 304 29 80 chr21 5041964 5042102 -29865468 + L2 LINE L2 2302 2432 -882 324 183 0 17 chr21 5043923 5043983 -29863587 + Zaphod DNA AcHobo 179 237 -3786 702 235 53 51 chr21 5044018 5044599 -29862971 + Zaphod DNA AcHobo 295 988 -3035 613 247 69 9 chr21 5044605 5044836 -29862734 + Zaphod DNA AcHobo 3593 3837 -186 2824 13 0 0 chr21 5045998 5046309 -29861261 + AluYa5 SINE Alu 1 311 0 26 0 0 0 chr21 5046658 5046684 -29860886 + AT_rich Low_complexity Low_complexity 1 26 0 2383 65 3 10 chr21 5047880 5048189 -29859381 - AluY SINE Alu -4 307 1 306 0 0 0 chr21 5048196 5048230 -29859340 + (TTA)n Simple_repeat Simple_repeat 3 36 0 5624 32 0 0 chr21 5048230 5048892 -29858678 - L1PA4 LINE L1 -18 6137 5476 9442 26 3 1 chr21 5048903 5050798 -29856772 - L1PA4 LINE L1 0 6155 4259 1857 19 0 0 chr21 5050798 5051010 -29856560 + L1PA4 LINE L1 5940 6154 -1 21222 99 19 4 chr21 5051027 5054953 -29852617 + L1PA7 LINE L1 2175 6154 0 251 71 24 0 chr21 5055508 5055550 -29852020 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1602 197 44 19 chr21 5057316 5057681 -29849889 + MLT1A2 LTR MaLR 1 374 0 607 230 99 6 chr21 5058287 5058448 -29849122 - MER45A DNA AcHobo -1 177 2 440 275 161 0 chr21 5060683 5060832 -29846738 - MIR SINE MIR 0 262 90 254 73 24 0 chr21 5061132 5061173 -29846397 + (TC)n Simple_repeat Simple_repeat 1 42 0 555 248 20 0 chr21 5062315 5062468 -29845102 + L1MA10 LINE L1 6176 6331 -3 201 94 0 0 chr21 5063745 5063777 -29843793 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 874 159 0 21 chr21 5065131 5065414 -29842156 + (TA)n Simple_repeat Simple_repeat 1 277 0 361 278 0 0 chr21 5065424 5065514 -29842056 + L1MC4 LINE L1 6614 6703 -1339 386 250 0 0 chr21 5065446 5065534 -29842036 - L1MC4 LINE L1 -1339 6703 6616 1832 183 41 68 chr21 5065754 5066192 -29841378 + MSTB LTR MaLR 1 426 0 2073 70 7 0 chr21 5066798 5067069 -29840501 - AluY SINE Alu 0 311 39 27 49 0 0 chr21 5067652 5067693 -29839877 + AT_rich Low_complexity Low_complexity 1 41 0 180 0 0 0 chr21 5069387 5069407 -29838163 + (T)n Simple_repeat Simple_repeat 1 20 0 1750 288 47 4 chr21 5071249 5071777 -29835793 - MLT1H1 LTR MaLR -2 553 3 627 227 82 41 chr21 5071897 5072240 -29835330 + L1MC5 LINE L1 7524 7880 -81 356 299 7 82 chr21 5072546 5072693 -29834877 - L2 LINE L2 0 3272 3137 495 48 0 0 chr21 5073071 5073133 -29834437 + (TTCC)n Simple_repeat Simple_repeat 3 64 0 589 263 66 70 chr21 5073315 5073356 -29834214 - MIR SINE MIR -32 230 190 2044 115 7 0 chr21 5073356 5073635 -29833935 + AluSq SINE Alu 1 281 -32 212 0 0 35 chr21 5073636 5073665 -29833905 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 589 263 66 70 chr21 5073665 5073849 -29833721 - MIR SINE MIR -71 191 4 235 271 57 0 chr21 5073899 5073969 -29833601 + MLT1I LTR MaLR 80 153 -256 21542 32 0 0 chr21 5074705 5078083 -29829487 + L1PA4 LINE L1 2769 6153 -2 1480 244 70 70 chr21 5078163 5078705 -29828865 - MLT1F1 LTR MaLR 0 567 1 9396 155 22 17 chr21 5078725 5078746 -29828824 + L1MA3 LINE L1 3431 3450 -2855 1615 204 0 32 chr21 5078746 5079060 -29828510 + AluJb SINE Alu 3 306 -6 9396 155 22 17 chr21 5079060 5081906 -29825664 + L1MA3 LINE L1 3450 6305 0 180 0 0 0 chr21 5082219 5082239 -29825331 + (TG)n Simple_repeat Simple_repeat 2 21 0 257 75 25 0 chr21 5082238 5082278 -29825292 + (TA)n Simple_repeat Simple_repeat 2 42 0 2057 107 0 0 chr21 5082354 5082670 -29824900 - AluY SINE Alu 0 316 1 257 274 0 105 chr21 5083730 5083825 -29823745 - L2 LINE L2 0 3272 3188 1454 175 24 3 chr21 5085039 5085330 -29822240 + L1MB3 LINE L1 5887 6183 0 542 285 26 55 chr21 5085452 5085761 -29821809 + HAL1b LINE L1 368 667 -681 332 329 84 12 chr21 5085783 5085950 -29821620 + HAL1b LINE L1 733 911 -437 604 287 24 6 chr21 5086543 5086707 -29820863 + MIR3 SINE MIR 41 207 -1 1762 135 7 31 chr21 5086964 5087290 -29820280 - AluSx SINE Alu 0 319 1 23 54 0 0 chr21 5089212 5089249 -29818321 + AT_rich Low_complexity Low_complexity 1 37 0 943 109 0 0 chr21 5089814 5089942 -29817628 + AluYb8 SINE Alu 5 132 -186 180 0 0 0 chr21 5089942 5089962 -29817608 + (A)n Simple_repeat Simple_repeat 1 20 0 236 189 0 0 chr21 5090033 5090086 -29817484 + A-rich Low_complexity Low_complexity 1 53 0 328 336 0 33 chr21 5090945 5091067 -29816503 + L2 LINE L2 3180 3297 -16 477 333 71 18 chr21 5093806 5094031 -29813539 - MIR SINE MIR -12 250 14 773 234 99 20 chr21 5096907 5097211 -29810359 + L1MC4 LINE L1 6832 7159 -883 664 213 13 0 chr21 5097219 5097369 -29810201 + L1MC4a LINE L1 7124 7275 -533 2473 181 53 10 chr21 5097380 5097887 -29809683 + MER34 LTR ERV1 11 539 -3 348 240 32 56 chr21 5097889 5098014 -29809556 + L1MC4a LINE L1 7272 7393 -415 1883 166 0 16 chr21 5098285 5098599 -29808971 + AluJo SINE Alu 1 309 -3 1220 128 0 0 chr21 5099363 5099535 -29808035 + L1PA7 LINE L1 1 172 -6289 4785 171 18 35 chr21 5099534 5100505 -29807065 + L1PA7 LINE L1 1104 2059 -4397 16642 102 11 0 chr21 5100505 5103788 -29803782 + L1PA7 LINE L1 3187 6465 -4 25 65 0 0 chr21 5103901 5103947 -29803623 + AT_rich Low_complexity Low_complexity 1 46 0 318 132 0 0 chr21 5104561 5104614 -29802956 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 305 126 29 chr21 5104779 5104953 -29802617 - L2 LINE L2 -908 2406 2216 424 293 95 48 chr21 5107190 5107675 -29799895 - L1ME3 LINE L1 -337 5825 5314 1580 209 3 3 chr21 5107675 5107972 -29799598 - AluJo SINE Alu -15 297 1 424 293 95 48 chr21 5107972 5108023 -29799547 - L1ME3 LINE L1 -848 5314 5267 1263 287 40 42 chr21 5108068 5108558 -29799012 - L1ME3 LINE L1 -998 5148 4657 1959 110 4 0 chr21 5108558 5108854 -29798716 - AluSq SINE Alu 0 317 21 1263 287 40 42 chr21 5108854 5108885 -29798685 - L1ME3 LINE L1 -1489 4657 4627 532 260 68 23 chr21 5108935 5109200 -29798370 - L1ME3 LINE L1 -1545 4601 4325 21 71 0 0 chr21 5109775 5109817 -29797753 + AT_rich Low_complexity Low_complexity 1 42 0 28 0 0 0 chr21 5110316 5110344 -29797226 + AT_rich Low_complexity Low_complexity 1 28 0 256 163 23 0 chr21 5112856 5112899 -29794671 - L3 LINE CR1 -944 633 590 297 260 26 0 chr21 5112919 5112996 -29794574 - L2 LINE L2 -2 3311 3233 516 333 66 29 chr21 5113265 5113613 -29793957 + L1MC/D LINE L1 5462 5822 -1986 521 263 41 29 chr21 5114775 5114946 -29792624 - MER69A DNA AcHobo -1 176 4 222 37 0 0 chr21 5116247 5116274 -29791296 + (A)n Simple_repeat Simple_repeat 1 27 0 624 306 51 5 chr21 5116864 5117060 -29790510 - MIR SINE MIR 0 262 58 677 299 47 49 chr21 5117818 5118223 -29789347 - MLT1I LTR MaLR 0 409 6 241 111 0 0 chr21 5120894 5120930 -29786640 + L2 LINE L2 3271 3306 -7 534 349 59 22 chr21 5121119 5121443 -29786127 - L3 LINE CR1 -193 1384 1049 272 296 74 28 chr21 5121451 5121559 -29786011 - L2 LINE L2 -1 3312 3200 24 0 0 0 chr21 5121721 5121745 -29785825 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr21 5121967 5122011 -29785559 + AT_rich Low_complexity Low_complexity 1 44 0 486 286 149 32 chr21 5122978 5123321 -29784249 + L1ME2 LINE L1 860 1242 -5154 1160 270 78 66 chr21 5123322 5124227 -29783343 + L1ME2 LINE L1 1343 2258 -4138 458 355 5 9 chr21 5124293 5124510 -29783060 + ERVL LTR ERVL 4258 4473 -1291 1031 283 49 17 chr21 5125953 5126360 -29781210 + L1ME2 LINE L1 4524 4943 -1272 22 35 0 0 chr21 5126360 5126389 -29781181 + AT_rich Low_complexity Low_complexity 1 29 0 948 240 32 58 chr21 5126414 5127021 -29780549 + L1ME2 LINE L1 4917 5512 -719 2106 183 0 3 chr21 5127053 5127419 -29780151 + MLT1A1 LTR MaLR 1 365 0 906 253 56 9 chr21 5127458 5127921 -29779649 + L1ME2 LINE L1 5647 6182 -51 208 261 0 22 chr21 5128555 5128601 -29778969 + MER5A DNA MER1_type 40 84 -105 22 56 0 0 chr21 5130829 5130865 -29776705 + AT_rich Low_complexity Low_complexity 1 36 0 324 352 116 46 chr21 5131147 5131519 -29776051 + L1M4 LINE L1 3951 4348 -1798 392 267 48 77 chr21 5131541 5131878 -29775692 + L1MEc LINE L1 3099 3425 -2790 558 311 90 56 chr21 5131985 5132627 -29774943 + L1M4 LINE L1 4570 5233 -913 246 280 122 65 chr21 5133149 5133363 -29774207 + L2 LINE L2 2564 2789 -525 250 333 0 0 chr21 5133699 5133774 -29773796 + L2 LINE L2 3237 3311 -2 198 0 0 0 chr21 5133867 5133889 -29773681 + (GAAAA)n Simple_repeat Simple_repeat 4 25 0 425 274 55 65 chr21 5134462 5134663 -29772907 - LTR67 LTR ERVL -2 555 357 716 253 12 24 chr21 5135232 5135402 -29772168 - MER20 DNA MER1_type -11 208 41 1908 139 10 7 chr21 5135567 5135877 -29771693 - AluSq SINE Alu -2 311 1 2441 47 3 3 chr21 5135901 5136199 -29771371 - AluY SINE Alu -13 298 1 34 42 0 0 chr21 5136220 5136268 -29771302 + AT_rich Low_complexity Low_complexity 1 48 0 1567 179 13 23 chr21 5136690 5136998 -29770572 + AluJb SINE Alu 1 305 -7 252 149 0 0 chr21 5137342 5137389 -29770181 + (TC)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr21 5137937 5137960 -29769610 + AT_rich Low_complexity Low_complexity 1 23 0 311 280 0 17 chr21 5139044 5139162 -29768408 + (TA)n Simple_repeat Simple_repeat 1 116 0 576 274 49 36 chr21 5139232 5139455 -29768115 + MIR SINE MIR 37 262 0 1577 209 0 7 chr21 5139916 5140223 -29767347 - AluJb SINE Alu -7 305 1 1096 331 36 29 chr21 5140236 5140852 -29766718 + HERV16 LTR ERVL 37 656 -4340 1753 171 10 7 chr21 5141034 5141493 -29766077 - AluJb SINE Alu 0 460 1 1625 291 34 30 chr21 5142316 5143462 -29764108 + HERV16 LTR ERVL 1818 3027 -1969 194 165 10 31 chr21 5143618 5143715 -29763855 + (TA)n Simple_repeat Simple_repeat 2 96 0 2495 149 13 10 chr21 5143718 5143734 -29763836 - MSTA LTR MaLR -26 387 373 2041 135 7 0 chr21 5143734 5144031 -29763539 + AluSx SINE Alu 1 299 -13 2495 149 13 10 chr21 5144031 5144416 -29763154 - MSTA LTR MaLR -40 373 1 1594 186 96 6 chr21 5144580 5144914 -29762656 + MLT1A1 LTR MaLR 2 365 0 2214 65 3 58 chr21 5147005 5147313 -29760257 - AluY SINE Alu -8 303 13 279 339 63 26 chr21 5149892 5150081 -29757489 - L2 LINE L2 -5 3308 3113 204 239 15 0 chr21 5150458 5150525 -29757045 + (TA)n Simple_repeat Simple_repeat 2 69 0 180 0 0 0 chr21 5150900 5150920 -29756650 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 24 32 0 0 chr21 5151329 5151360 -29756210 + AT_rich Low_complexity Low_complexity 1 31 0 1684 282 44 45 chr21 5152331 5153130 -29754440 + L1ME LINE L1 191 988 -5082 1442 231 50 2 chr21 5153136 5153633 -29753937 + L1MC4 LINE L1 7281 7846 -149 1375 268 48 23 chr21 5153616 5154221 -29753349 + L1M4 LINE L1 4542 5161 -985 213 356 0 0 chr21 5157029 5157102 -29750468 + L2 LINE L2 3226 3298 -15 225 325 77 8 chr21 5157936 5158053 -29749517 + MIR SINE MIR 5 129 -133 191 196 98 0 chr21 5161424 5161475 -29746095 - MIR SINE MIR -75 187 132 23 33 0 0 chr21 5162371 5162401 -29745169 + AT_rich Low_complexity Low_complexity 1 30 0 216 291 12 58 chr21 5163139 5163225 -29744345 - MIR SINE MIR -18 244 163 324 0 0 0 chr21 5163658 5163694 -29743876 + (A)n Simple_repeat Simple_repeat 1 36 0 434 214 0 0 chr21 5163782 5163866 -29743704 - AluJb SINE Alu -187 125 42 1151 258 71 32 chr21 5164052 5164432 -29743138 - MSTD LTR MaLR -1 395 1 232 259 0 0 chr21 5164464 5164518 -29743052 + (CATA)n Simple_repeat Simple_repeat 3 56 0 781 330 39 17 chr21 5165294 5165652 -29741918 + LTR33 LTR ERVL 155 520 -1 24 0 0 0 chr21 5165737 5165761 -29741809 + AT_rich Low_complexity Low_complexity 1 24 0 358 273 47 0 chr21 5165776 5165904 -29741666 + MER110 LTR ERV1 310 443 -48 22 0 0 0 chr21 5165970 5165992 -29741578 + AT_rich Low_complexity Low_complexity 1 22 0 268 242 23 31 chr21 5168267 5168395 -29739175 + (CATATA)n Simple_repeat Simple_repeat 3 129 0 259 136 0 23 chr21 5168708 5168752 -29738818 - tRNA-Cys-TGC tRNA tRNA -30 45 3 32 26 0 0 chr21 5169212 5169251 -29738319 + AT_rich Low_complexity Low_complexity 1 39 0 290 101 38 51 chr21 5170969 5171048 -29736522 + GA-rich Low_complexity Low_complexity 4 81 0 21 36 0 0 chr21 5172308 5172336 -29735234 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr21 5172450 5172489 -29735081 + AT_rich Low_complexity Low_complexity 1 39 0 329 115 0 0 chr21 5172510 5172562 -29735008 - AluSc SINE Alu 0 299 248 3030 221 61 56 chr21 5172657 5174024 -29733546 - L1M4c LINE L1 -4352 2211 800 265 255 0 0 chr21 5174115 5174162 -29733408 - L1M3de LINE L1 -5258 1395 1349 24 91 0 0 chr21 5175782 5175848 -29731722 + AT_rich Low_complexity Low_complexity 1 66 0 2362 72 0 7 chr21 5176943 5177247 -29730323 + AluY SINE Alu 1 302 -9 1632 179 4 7 chr21 5177573 5177852 -29729718 + AluJb SINE Alu 1 278 -34 3241 123 16 15 chr21 5177854 5178568 -29729002 - L1P5 LINE L1 -412 5739 5030 189 107 0 0 chr21 5178704 5178732 -29728838 + (T)n Simple_repeat Simple_repeat 1 28 0 487 271 25 0 chr21 5180491 5180613 -29726957 - L1ME LINE L1 -472 5649 5525 21 0 0 0 chr21 5183200 5183221 -29724349 + AT_rich Low_complexity Low_complexity 1 21 0 322 311 47 9 chr21 5184553 5184659 -29722911 - MIR SINE MIR -66 142 33 2125 140 7 0 chr21 5185585 5185892 -29721678 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr21 5185995 5186026 -29721544 + AT_rich Low_complexity Low_complexity 1 31 0 776 192 26 0 chr21 5186535 5186691 -29720879 + L1MA7 LINE L1 5893 6052 -239 501 174 25 25 chr21 5186692 5186813 -29720757 + L1MA7 LINE L1 6160 6280 -11 353 353 7 7 chr21 5187128 5187281 -29720289 + MIR SINE MIR 110 262 0 789 257 5 28 chr21 5187723 5187937 -29719633 - LTR16A1 LTR ERVL 0 457 249 35 63 0 0 chr21 5189042 5189105 -29718465 + AT_rich Low_complexity Low_complexity 1 63 0 221 163 20 0 chr21 5189164 5189213 -29718357 + CT-rich Low_complexity Low_complexity 3 52 0 23 0 0 0 chr21 5190561 5190584 -29716986 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr21 5192279 5192321 -29715249 + AT_rich Low_complexity Low_complexity 1 42 0 2946 181 6 0 chr21 5192628 5193110 -29714460 + L1MA4 LINE L1 1 485 -4843 315 187 0 27 chr21 5193115 5193190 -29714380 + L1P LINE L1 3775 3847 -2299 7330 174 27 16 chr21 5193180 5195548 -29712022 + L1MA4 LINE L1 4051 6452 -30 22 0 0 0 chr21 5195558 5195580 -29711990 + AT_rich Low_complexity Low_complexity 1 22 0 941 305 58 22 chr21 5195580 5195941 -29711629 + L2 LINE L2 2131 2504 -810 2317 97 3 0 chr21 5196841 5197150 -29710420 + AluY SINE Alu 1 310 -1 25542 149 17 16 chr21 5197226 5202785 -29704785 + L1PA10 LINE L1 859 6483 0 1606 0 0 0 chr21 5202899 5203079 -29704491 + L1PA3 LINE L1 5792 5971 -184 696 253 55 93 chr21 5203265 5203629 -29703941 - MLT1H LTR MaLR -188 361 12 748 277 71 19 chr21 5205134 5205401 -29702169 - MLT1H LTR MaLR -261 288 8 1543 204 3 0 chr21 5207315 5207599 -29699971 - AluJo SINE Alu -12 300 16 582 154 46 120 chr21 5209202 5209377 -29698193 + MLT1D LTR MaLR 5 166 -460 1299 209 4 8 chr21 5209419 5209678 -29697892 + MLT1D LTR MaLR 248 505 0 2561 82 119 5 chr21 5210046 5210448 -29697122 + LTR7 LTR ERV1 1 448 -2 27696 84 19 13 chr21 5210450 5214417 -29693153 + HERVH LTR ERV1 1 3993 -3720 4164 155 1 3 chr21 5214419 5215082 -29692488 + HERVH LTR ERV1 4488 5149 -2564 1370 128 23 5 chr21 5215079 5215298 -29692272 + HERVH LTR ERV1 5597 5819 -1894 2254 107 53 13 chr21 5215298 5215673 -29691897 + HERVH LTR ERV1 7324 7713 0 2490 87 119 10 chr21 5215673 5216077 -29691493 + LTR7 LTR ERV1 1 448 -2 240 356 115 11 chr21 5216088 5216262 -29691308 + L2 LINE L2 3117 3308 -5 1714 142 31 3 chr21 5216312 5216600 -29690970 - THE1C LTR MaLR 0 375 80 963 183 48 11 chr21 5216598 5216784 -29690786 - THE1C LTR MaLR -182 193 1 441 264 101 68 chr21 5216929 5217346 -29690224 - MLT1H LTR MaLR 0 595 118 803 230 67 80 chr21 5217362 5217747 -29689823 + MLT2B1 LTR ERVL 22 415 -100 227 167 56 19 chr21 5217783 5217837 -29689733 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 24 67 0 0 chr21 5218066 5218111 -29689459 + AT_rich Low_complexity Low_complexity 1 45 0 36 40 0 0 chr21 5218327 5218377 -29689193 + AT_rich Low_complexity Low_complexity 1 50 0 238 218 0 51 chr21 5219539 5219617 -29687953 + T-rich Low_complexity Low_complexity 2 75 0 2118 124 3 3 chr21 5219645 5219943 -29687627 + AluSq SINE Alu 1 298 -15 445 272 22 15 chr21 5220771 5220907 -29686663 - MLT2E LTR ERVL -490 138 2 823 250 43 47 chr21 5221370 5221626 -29685944 + LTR40b LTR ERVL 193 447 -15 988 115 6 0 chr21 5221932 5222088 -29685482 - L1MA4A LINE L1 -11 6292 6136 11718 183 33 27 chr21 5222094 5224957 -29682613 + L1MA4A LINE L1 2630 5502 -801 1479 112 105 112 chr21 5224957 5225271 -29682299 + AluSx SINE Alu 1 312 0 11718 183 33 27 chr21 5225271 5225905 -29681665 + L1MA4A LINE L1 5502 6131 -172 1073 261 68 12 chr21 5225905 5226230 -29681340 - ERVL LTR ERVL -526 5238 4896 824 313 13 0 chr21 5226558 5226788 -29680782 - ERVL LTR ERVL -1352 4412 4180 308 348 43 0 chr21 5226976 5227091 -29680479 - ERVL LTR ERVL -1904 3860 3741 482 290 47 24 chr21 5227143 5227312 -29680258 + MIR SINE MIR 89 261 -1 239 273 80 23 chr21 5229514 5229602 -29677968 - MIR3 SINE MIR -8 200 108 2220 115 0 0 chr21 5231548 5231860 -29675710 - AluSx SINE Alu 0 312 1 2495 80 122 5 chr21 5231967 5232368 -29675202 + LTR7 LTR ERV1 1 448 -2 15798 100 16 19 chr21 5232370 5235249 -29672321 + HERVH LTR ERV1 1 2995 -4718 6225 76 6 2 chr21 5235228 5236079 -29671491 + HERVH LTR ERV1 3140 3993 -3720 4325 142 0 3 chr21 5236081 5236745 -29670825 + HERVH LTR ERV1 4488 5149 -2564 1280 137 38 0 chr21 5236746 5236958 -29670612 + HERVH LTR ERV1 5600 5819 -1894 2346 100 48 13 chr21 5236956 5237335 -29670235 + HERVH LTR ERV1 7322 7713 0 2528 84 119 7 chr21 5237335 5237738 -29669832 + LTR7 LTR ERV1 1 448 -2 23 86 0 0 chr21 5238540 5238598 -29668972 + AT_rich Low_complexity Low_complexity 1 58 0 3337 35 12 0 chr21 5239336 5239739 -29667831 + L1PA3 LINE L1 5745 6152 -3 1498 215 16 50 chr21 5240544 5240921 -29666649 + MLT1A2 LTR MaLR 11 374 0 1425 243 22 3 chr21 5241933 5242254 -29665316 + MER58B DNA MER1_type 1 327 -14 795 197 0 0 chr21 5243519 5243656 -29663914 + MSTD LTR MaLR 3 139 -257 1142 162 6 0 chr21 5243671 5243850 -29663720 + AluJb SINE Alu 131 310 -2 905 186 69 14 chr21 5243891 5244104 -29663466 + MSTD LTR MaLR 212 396 0 7707 220 75 63 chr21 5244104 5244828 -29662742 + Zaphod DNA AcHobo 238 952 -3071 492 231 66 41 chr21 5244828 5244949 -29662621 + FLAM_A SINE Alu 2 125 -8 7707 220 75 63 chr21 5244949 5246756 -29660814 + Zaphod DNA AcHobo 952 2735 -1288 1802 138 7 4 chr21 5246756 5247025 -29660545 + AluSx SINE Alu 33 302 -10 7707 220 75 63 chr21 5247025 5247043 -29660527 + Zaphod DNA AcHobo 2735 2751 -1272 413 189 278 0 chr21 5247043 5247133 -29660437 + FLAM_A SINE Alu 1 115 -18 219 69 0 0 chr21 5247133 5247162 -29660408 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 7707 220 75 63 chr21 5247162 5247791 -29659779 + Zaphod DNA AcHobo 2750 3458 -565 915 215 61 7 chr21 5247860 5248139 -29659431 + Zaphod DNA AcHobo 3556 3849 -174 389 262 0 10 chr21 5248178 5248281 -29659289 + MER115 DNA AcHobo 592 693 0 243 152 0 0 chr21 5248446 5248492 -29659078 + T-rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr21 5249154 5249178 -29658392 + AT_rich Low_complexity Low_complexity 1 24 0 2122 100 7 0 chr21 5249215 5249495 -29658075 + AluSq SINE Alu 15 296 -17 1169 355 27 17 chr21 5250171 5250765 -29656805 - HERVL LTR ERVL -2104 3550 2951 1537 114 18 4 chr21 5250958 5251185 -29656385 - MER30 DNA MER1_type 0 230 1 294 350 35 20 chr21 5252203 5252400 -29655170 - LTR33 LTR ERVL -303 218 19 300 357 73 63 chr21 5252683 5252983 -29654587 - L2 LINE L2 -35 3237 2935 14103 201 32 30 chr21 5253594 5254232 -29653338 - L1MA4 LINE L1 -3 6479 5844 1880 156 3 3 chr21 5254232 5254539 -29653031 - AluSx SINE Alu -5 307 1 14103 201 32 30 chr21 5254539 5254894 -29652676 - L1MA4 LINE L1 -638 5844 5491 5197 55 8 5 chr21 5254894 5255565 -29652005 - L1PA7 LINE L1 -1 6153 5481 1454 188 30 20 chr21 5255565 5255863 -29651707 - AluSx SINE Alu -11 301 1 14103 201 32 30 chr21 5255863 5260532 -29647038 - L1MA4 LINE L1 -991 5491 833 189 0 0 0 chr21 5260532 5260553 -29647017 + (TG)n Simple_repeat Simple_repeat 2 22 0 14103 201 32 30 chr21 5260553 5261386 -29646184 - L1MA4 LINE L1 -5649 833 3 2363 68 7 3 chr21 5261782 5262091 -29645479 + AluY SINE Alu 1 310 -1 231 88 0 0 chr21 5262162 5262196 -29645374 + (A)n Simple_repeat Simple_repeat 1 34 0 1028 162 0 0 chr21 5262880 5263047 -29644523 + MLT1B LTR MaLR 2 168 -222 14464 184 37 28 chr21 5263061 5267995 -29639575 + L1MA3 LINE L1 14 5047 -2677 2429 84 0 0 chr21 5267995 5268304 -29639266 + AluY SINE Alu 2 310 -1 14464 184 37 28 chr21 5268304 5271004 -29636566 + L1MA3 LINE L1 5047 7722 -2 313 151 0 0 chr21 5271025 5271078 -29636492 + L1MB8 LINE L1 6126 6178 0 972 181 6 0 chr21 5271155 5271326 -29636244 + MLT1B LTR MaLR 219 390 0 2143 121 3 0 chr21 5271726 5272024 -29635546 - AluSx SINE Alu -13 299 1 2013 242 38 16 chr21 5272603 5273106 -29634464 - LTR40a LTR ERVL -5 514 1 410 236 45 11 chr21 5273440 5273529 -29634041 + MER58A DNA MER1_type 1 92 -15 1038 174 35 5 chr21 5273534 5273735 -29633835 - L1PA16 LINE L1 -4 6162 5956 712 215 38 25 chr21 5273760 5273918 -29633652 + MER58A DNA MER1_type 65 224 0 2373 149 29 7 chr21 5273947 5274363 -29633207 + L1PA16 LINE L1 5729 6153 -13 1693 161 0 4 chr21 5275769 5276036 -29631534 - AluJo SINE Alu -44 268 3 2116 163 51 22 chr21 5276227 5276639 -29630931 - MSTB LTR MaLR -2 424 1 2201 240 107 72 chr21 5276833 5277793 -29629777 + L1MC4a LINE L1 6441 7434 -374 613 255 73 0 chr21 5277943 5278245 -29629325 + L1MC4 LINE L1 7690 8028 -14 5878 132 80 2 chr21 5278423 5279723 -29627847 - L1MA1 LINE L1 -7 7316 5930 3031 214 24 19 chr21 5279721 5281317 -29626253 - L1 LINE L1 -815 5331 3649 342 197 28 0 chr21 5281346 5281417 -29626153 + L1M4 LINE L1 474 546 -5996 2135 250 29 17 chr21 5281438 5282097 -29625473 + L1M4 LINE L1 4639 5305 -1339 1995 129 0 0 chr21 5282103 5282423 -29625147 - AluSg SINE Alu 0 320 1 502 209 9 9 chr21 5282433 5282538 -29625032 - L1MA1 LINE L1 -1237 5930 5826 2144 234 25 12 chr21 5282539 5283053 -29624517 - L1MA1 LINE L1 -3402 3765 3245 6552 215 30 22 chr21 5283063 5285438 -29622132 - L1MA1 LINE L1 -3970 3198 809 235 186 0 0 chr21 5288635 5288678 -29618892 - MSTB1 LTR MaLR -13 419 377 353 178 12 31 chr21 5288704 5288867 -29618703 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 375 187 64 35 chr21 5288892 5289063 -29618507 + (CATTA)n Simple_repeat Simple_repeat 3 178 0 429 165 44 66 chr21 5289104 5289286 -29618284 + (CATTA)n Simple_repeat Simple_repeat 1 178 0 431 200 0 63 chr21 5289211 5289401 -29618169 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 448 137 16 33 chr21 5289413 5289595 -29617975 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 333 187 0 36 chr21 5289653 5289819 -29617751 + (CATAA)n Simple_repeat Simple_repeat 5 164 0 491 185 3 31 chr21 5289825 5290150 -29617420 + (TATAA)n Simple_repeat Simple_repeat 1 315 0 376 119 17 0 chr21 5290166 5290225 -29617345 - MSTB1 LTR MaLR -372 60 1 609 120 55 0 chr21 5290276 5290568 -29617002 + (TATAG)n Simple_repeat Simple_repeat 1 307 0 203 118 44 29 chr21 5290568 5290636 -29616934 + (CTATA)n Simple_repeat Simple_repeat 2 70 0 399 48 102 24 chr21 5290639 5290806 -29616764 + (TA)n Simple_repeat Simple_repeat 1 180 0 338 160 19 64 chr21 5290807 5290963 -29616607 + (TTATA)n Simple_repeat Simple_repeat 1 149 0 439 96 51 40 chr21 5290963 5291140 -29616430 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 21 57 0 0 chr21 5291140 5291175 -29616395 + AT_rich Low_complexity Low_complexity 1 35 0 282 116 0 0 chr21 5291183 5291226 -29616344 + MSTB1 LTR MaLR 377 419 -13 2020 144 49 44 chr21 5291243 5291610 -29615960 - MSTB1 LTR MaLR -63 369 1 259 271 124 16 chr21 5292439 5292568 -29615002 - MIR SINE MIR -73 189 47 471 290 49 19 chr21 5292573 5292735 -29614835 + MIR SINE MIR 20 186 -76 307 82 41 0 chr21 5293288 5293337 -29614233 - Alu SINE Alu -6 294 244 938 167 0 0 chr21 5293337 5293481 -29614089 - AluJ SINE Alu -33 279 136 329 82 82 0 chr21 5293491 5293564 -29614006 + CT-rich Low_complexity Low_complexity 2 80 0 838 160 0 0 chr21 5293566 5293697 -29613873 - AluJ SINE Alu -169 133 3 21 0 0 0 chr21 5294452 5294473 -29613097 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr21 5295144 5295190 -29612380 + (CA)n Simple_repeat Simple_repeat 2 47 0 635 272 94 13 chr21 5295307 5295531 -29612039 - MIR SINE MIR 0 262 21 602 260 45 59 chr21 5295709 5295790 -29611780 + LTR41 LTR ERVL 1 82 -691 2083 171 26 0 chr21 5295790 5296169 -29611401 - MLT1B LTR MaLR -1 389 1 602 260 45 59 chr21 5296169 5296375 -29611195 + LTR41 LTR ERVL 82 284 -489 362 207 116 167 chr21 5296602 5297052 -29610518 + LTR41 LTR ERVL 337 763 -10 253 239 0 0 chr21 5297126 5297193 -29610377 + L1M4 LINE L1 4171 4237 -1909 329 205 23 78 chr21 5297608 5297753 -29609817 + MER58C DNA MER1_type 40 212 -3 194 246 18 18 chr21 5297761 5297818 -29609752 - L2 LINE L2 -1335 1979 1923 21 36 0 0 chr21 5298574 5298602 -29608968 + AT_rich Low_complexity Low_complexity 1 28 0 2156 248 45 24 chr21 5298610 5299351 -29608219 + L1M4 LINE L1 3289 4044 -2102 2062 75 0 0 chr21 5299674 5299942 -29607628 - L1PA8 LINE L1 -1 6171 5904 21 82 0 0 chr21 5300521 5300570 -29607000 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr21 5301140 5301169 -29606401 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr21 5301313 5301343 -29606227 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr21 5301782 5301811 -29605759 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 5301833 5301861 -29605709 + AT_rich Low_complexity Low_complexity 1 28 0 524 302 77 6 chr21 5303658 5303827 -29603743 - MLT1J2 LTR MaLR 0 450 270 13867 185 32 2 chr21 5304520 5307942 -29599628 - L1 LINE L1 -1026 6539 3017 501 189 0 146 chr21 5308605 5308790 -29598780 + MER53 DNA DNA 25 182 -7 408 187 0 0 chr21 5308730 5308805 -29598765 - MER53 DNA DNA -113 76 2 395 398 11 6 chr21 5309395 5309576 -29597994 - LTR16C LTR ERVL -4 487 306 1497 209 11 58 chr21 5310236 5310599 -29596971 + MLT2D LTR ERVL 3 348 -66 253 231 34 0 chr21 5310608 5310755 -29596815 + (TA)n Simple_repeat Simple_repeat 2 153 0 22 0 0 0 chr21 5311725 5311747 -29595823 + AT_rich Low_complexity Low_complexity 1 22 0 416 378 27 0 chr21 5312984 5313132 -29594438 - L2 LINE L2 -2079 1235 1084 1252 269 22 30 chr21 5313269 5313743 -29593827 + L1ME1 LINE L1 38 613 -5783 501 267 27 0 chr21 5313883 5314070 -29593500 + L1ME1 LINE L1 859 1050 -5346 1660 254 58 67 chr21 5314068 5314598 -29592972 + L1ME1 LINE L1 2742 3276 -2939 201 74 0 0 chr21 5314598 5314625 -29592945 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 40 0 0 chr21 5314634 5314659 -29592911 + (GA)n Simple_repeat Simple_repeat 2 26 0 1660 254 58 67 chr21 5314659 5315040 -29592530 + L1ME1 LINE L1 3284 3654 -2561 742 229 46 17 chr21 5315076 5315316 -29592254 + L1ME1 LINE L1 3781 4027 -2188 1546 246 68 20 chr21 5315357 5315800 -29591770 + MLT1D LTR MaLR 40 503 -2 631 233 40 50 chr21 5315800 5316002 -29591568 + L1ME1 LINE L1 4043 4242 -1973 1418 247 83 38 chr21 5316046 5316364 -29591206 + L1ME1 LINE L1 4324 4626 -1589 739 286 14 23 chr21 5316364 5316581 -29590989 - MER58C DNA MER1_type 0 215 1 1418 247 83 38 chr21 5316581 5316915 -29590655 + L1ME1 LINE L1 4626 5005 -1210 2028 139 48 23 chr21 5317025 5317378 -29590192 - THE1B LTR MaLR -2 362 1 702 267 0 0 chr21 5317570 5317716 -29589854 + MER58B DNA MER1_type 196 341 0 2728 232 27 68 chr21 5317727 5318659 -29588911 + L1ME1 LINE L1 5337 6230 -5 234 242 164 78 chr21 5318826 5318954 -29588616 - MER5B DNA MER1_type -39 139 1 249 180 0 0 chr21 5322010 5322060 -29585510 + T-rich Low_complexity Low_complexity 1 50 0 2091 126 0 7 chr21 5322466 5322768 -29584802 + AluSg SINE Alu 1 300 -10 3038 160 10 12 chr21 5323310 5323828 -29583742 + Tigger1 DNA MER2_type 31 547 -1871 6260 109 0 7 chr21 5323828 5325735 -29581835 + L1PA12 LINE L1 4261 6165 -3 2407 117 28 17 chr21 5327420 5327778 -29579792 + THE1B LTR MaLR 1 362 -2 912 135 0 0 chr21 5328516 5328664 -29578906 + (GAAA)n Simple_repeat Simple_repeat 2 149 0 279 173 0 0 chr21 5328664 5328716 -29578854 + G-rich Low_complexity Low_complexity 2 53 0 270 295 16 21 chr21 5328842 5328950 -29578620 - MIR SINE MIR -78 130 24 229 167 17 17 chr21 5330831 5330891 -29576679 + GA-rich Low_complexity Low_complexity 1 60 0 692 194 7 0 chr21 5332013 5332168 -29575402 - MER3 DNA MER1_type 0 2585 2430 322 221 44 0 chr21 5332166 5332234 -29575336 - MER3 DNA MER1_type -92 117 47 243 170 0 0 chr21 5333059 5333106 -29574464 + (AATTG)n Simple_repeat Simple_repeat 3 49 0 2710 253 44 13 chr21 5333173 5334019 -29573551 + L1M4 LINE L1 3658 4529 -1617 1592 239 65 5 chr21 5334021 5334742 -29572828 + L1M4 LINE L1 4570 5341 -805 6238 167 45 36 chr21 5334743 5335704 -29571866 + L1PA8A LINE L1 5131 4720 -1411 204 40 0 0 chr21 5335704 5335729 -29571841 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 6238 167 45 36 chr21 5335729 5337128 -29570442 + L1PA8A LINE L1 4719 6104 -27 844 175 42 25 chr21 5337124 5337372 -29570198 + L1MC2 LINE L1 6137 7704 -13 2024 147 0 3 chr21 5337372 5337686 -29569884 + AluSp SINE Alu 1 313 0 426 250 100 0 chr21 5338077 5338217 -29569353 + L2 LINE L2 1889 2042 -1272 273 29 0 0 chr21 5338220 5338254 -29569316 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 0 0 0 chr21 5338268 5338289 -29569281 + (GA)n Simple_repeat Simple_repeat 2 22 0 377 348 75 19 chr21 5338301 5338620 -29568950 + L2 LINE L2 2110 2446 -868 336 148 0 0 chr21 5339166 5339227 -29568343 + (TC)n Simple_repeat Simple_repeat 1 61 0 218 182 0 0 chr21 5339357 5339401 -29568169 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 25 0 0 0 chr21 5339440 5339465 -29568105 + AT_rich Low_complexity Low_complexity 1 25 0 1945 96 48 0 chr21 5340339 5340658 -29566912 + AluSx SINE Alu 1 332 0 21 71 0 0 chr21 5341442 5341484 -29566086 + AT_rich Low_complexity Low_complexity 1 42 0 376 126 0 165 chr21 5342955 5343082 -29564488 + L1MA8 LINE L1 6004 6109 -182 266 345 113 28 chr21 5344840 5344982 -29562588 + MER5A DNA MER1_type 35 188 -1 2192 97 0 6 chr21 5345287 5345598 -29561972 + AluY SINE Alu 1 309 -2 963 157 17 23 chr21 5345613 5345785 -29561785 + AluSg/x SINE Alu 127 297 -13 22 56 0 0 chr21 5346635 5346671 -29560899 + AT_rich Low_complexity Low_complexity 1 36 0 462 224 41 29 chr21 5346799 5346969 -29560601 + L1MC4a LINE L1 5317 5488 -2320 742 207 123 18 chr21 5347145 5347374 -29560196 - MLT1E2 LTR MaLR 0 626 364 235 213 0 0 chr21 5347374 5347421 -29560149 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 226 259 0 44 chr21 5347423 5347517 -29560053 - MLT1D LTR MaLR -269 357 255 621 267 25 43 chr21 5347799 5348080 -29559490 + L1MC4a LINE L1 5677 5952 -1856 726 267 5 16 chr21 5348855 5349042 -29558528 - MLT1B LTR MaLR 0 374 190 833 209 102 5 chr21 5349079 5349116 -29558454 - MLT1B LTR MaLR -175 215 1 727 208 75 6 chr21 5349116 5349275 -29558295 - MLT1B LTR MaLR -220 170 1 762 11 0 0 chr21 5349748 5349835 -29557735 + (AATAG)n Simple_repeat Simple_repeat 5 91 0 1938 158 33 43 chr21 5350601 5350804 -29556766 - MLT1A1 LTR MaLR 0 365 166 2211 128 0 0 chr21 5350804 5351110 -29556460 + AluSx SINE Alu 3 308 -4 1938 158 33 43 chr21 5351110 5351274 -29556296 - MLT1A1 LTR MaLR -199 166 2 24 0 0 0 chr21 5351500 5351524 -29556046 + AT_rich Low_complexity Low_complexity 1 24 0 37543 83 12 8 chr21 5351990 5358093 -29549477 + L1PA6 LINE L1 22 6154 0 21 0 0 0 chr21 5358093 5358114 -29549456 + AT_rich Low_complexity Low_complexity 1 21 0 2103 122 0 39 chr21 5358132 5358443 -29549127 - AluSg SINE Alu -11 299 1 222 356 15 23 chr21 5358469 5358601 -29548969 + MER5A DNA MER1_type 18 148 -41 1679 130 0 4 chr21 5359120 5359374 -29548196 - L1PA15 LINE L1 -4 6161 5909 252 0 0 0 chr21 5361172 5361200 -29546370 + (TC)n Simple_repeat Simple_repeat 1 28 0 658 272 51 28 chr21 5363310 5363564 -29544006 - Charlie8 DNA MER1_type -2156 261 2 25 0 0 0 chr21 5363937 5363962 -29543608 + AT_rich Low_complexity Low_complexity 1 25 0 203 217 33 0 chr21 5364610 5364670 -29542900 + T-rich Low_complexity Low_complexity 1 62 0 2424 78 7 0 chr21 5364750 5365059 -29542511 - AluY SINE Alu 0 311 1 417 316 112 40 chr21 5365075 5365398 -29542172 - MLT1L LTR MaLR -80 535 190 309 303 41 21 chr21 5365412 5365557 -29542013 - MLT1J LTR MaLR -363 148 1 1981 174 59 45 chr21 5365822 5366246 -29541324 - MSTB1 LTR MaLR -2 430 1 373 235 0 0 chr21 5366976 5367057 -29540513 - MER52A LTR ERV1 -82 1673 1593 244 290 0 0 chr21 5367130 5367192 -29540378 - MER52A LTR ERV1 -346 1409 1348 941 231 66 49 chr21 5367431 5367855 -29539715 - MER52A LTR ERV1 -523 1232 663 21 57 0 0 chr21 5371790 5371825 -29535745 + AT_rich Low_complexity Low_complexity 1 35 0 5135 177 27 20 chr21 5371842 5372486 -29535084 - L1PA16 LINE L1 -21 6145 5507 2354 106 0 0 chr21 5372486 5372798 -29534772 - AluSx SINE Alu 0 312 1 5135 177 27 20 chr21 5372798 5374002 -29533568 - L1PA16 LINE L1 -659 5507 4288 2309 228 12 8 chr21 5373993 5374589 -29532981 - L1 LINE L1 -1628 4518 3921 189 200 0 67 chr21 5376430 5376490 -29531080 - L2 LINE L2 -341 2972 2917 25 31 0 0 chr21 5377106 5377138 -29530432 + AT_rich Low_complexity Low_complexity 1 32 0 592 245 42 42 chr21 5377226 5377442 -29530128 - L1MA9 LINE L1 -39 6273 6058 6466 76 18 10 chr21 5379844 5380772 -29526798 + L1PA10 LINE L1 5223 6157 -11 1378 221 17 40 chr21 5382695 5383048 -29524522 - MLT1A1 LTR MaLR -2 363 19 21 0 0 0 chr21 5383107 5383128 -29524442 + AT_rich Low_complexity Low_complexity 1 21 0 188 293 0 0 chr21 5383466 5383507 -29524063 - L3 LINE CR1 -13 1564 1524 1572 318 55 5 chr21 5384276 5384930 -29522640 - HERV16 LTR ERVL -4205 791 105 676 305 82 72 chr21 5385030 5385433 -29522137 - LTR16A LTR ERVL -23 427 21 379 310 8 0 chr21 5385467 5385596 -29521974 + L1MC4 LINE L1 6920 7049 -993 967 277 38 40 chr21 5385648 5385995 -29521575 + L1MC4 LINE L1 7093 7438 -604 557 299 62 24 chr21 5385996 5386337 -29521233 + L1MC4 LINE L1 7450 7803 -239 38 51 0 0 chr21 5386481 5386540 -29521030 + AT_rich Low_complexity Low_complexity 1 59 0 335 311 0 0 chr21 5386953 5387043 -29520527 + L1MC4 LINE L1 6614 6703 -1339 349 300 0 0 chr21 5386965 5387055 -29520515 - L1MC4 LINE L1 -1339 6703 6614 635 172 90 0 chr21 5387076 5387198 -29520372 + FLAM_A SINE Alu 1 133 0 2372 123 5 21 chr21 5388627 5389008 -29518562 - THE1C LTR MaLR 0 375 1 2013 117 29 0 chr21 5390241 5390555 -29517015 - AluSx SINE Alu 0 322 1 2070 135 7 0 chr21 5390885 5391188 -29516382 + AluSq SINE Alu 1 305 -8 505 192 16 0 chr21 5391188 5391313 -29516257 + GA-rich Low_complexity Low_complexity 1 127 0 1698 218 60 3 chr21 5391428 5391638 -29515932 - MLT1F LTR MaLR -5 537 340 2626 163 5 0 chr21 5391638 5392068 -29515502 + MSTB1 LTR MaLR 1 432 0 1698 218 60 3 chr21 5392068 5392370 -29515200 - MLT1F LTR MaLR -202 340 1 275 291 78 82 chr21 5392370 5392576 -29514994 - L2 LINE L2 -967 2347 2143 1042 212 57 79 chr21 5392996 5393364 -29514206 - MLT1A2 LTR MaLR -13 361 2 247 293 114 29 chr21 5393928 5394068 -29513502 - MIR SINE MIR -110 152 1 22 0 0 0 chr21 5394589 5394611 -29512959 + AT_rich Low_complexity Low_complexity 1 22 0 996 148 0 12 chr21 5397835 5398002 -29509568 + FRAM SINE Alu 12 166 -10 898 230 13 44 chr21 5398187 5398413 -29509157 + MER20 DNA MER1_type 1 219 0 36 82 0 0 chr21 5398598 5398683 -29508887 + AT_rich Low_complexity Low_complexity 1 85 0 310 202 3 57 chr21 5399967 5400117 -29507453 - MER39 LTR ERV1 -20 687 380 907 203 212 0 chr21 5400135 5400347 -29507223 - AluJo SINE Alu -17 295 39 648 207 43 117 chr21 5400358 5400658 -29506912 - MER39 LTR ERV1 -170 537 260 402 151 0 0 chr21 5400756 5400829 -29506741 + (CA)n Simple_repeat Simple_repeat 1 73 0 1736 162 29 76 chr21 5401468 5401888 -29505682 + MSTB1 LTR MaLR 29 428 -4 201 129 0 0 chr21 5402108 5402139 -29505431 + (TTTTTG)n Simple_repeat Simple_repeat 6 36 0 22 0 0 0 chr21 5402325 5402347 -29505223 + AT_rich Low_complexity Low_complexity 1 22 0 855 0 0 0 chr21 5403007 5403102 -29504468 + (TA)n Simple_repeat Simple_repeat 1 95 0 351 0 0 0 chr21 5403101 5403140 -29504430 + (GA)n Simple_repeat Simple_repeat 2 40 0 207 0 0 0 chr21 5403156 5403179 -29504391 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 677 298 60 5 chr21 5404100 5404318 -29503252 - MIR SINE MIR -32 230 1 27 0 0 0 chr21 5404782 5404809 -29502761 + AT_rich Low_complexity Low_complexity 1 27 0 183 227 45 0 chr21 5405254 5405298 -29502272 + L2 LINE L2 3214 3259 -13 561 181 13 7 chr21 5405422 5405571 -29501999 + GA-rich Low_complexity Low_complexity 3 152 0 2983 67 9 20 chr21 5405571 5406018 -29501552 + LTR7 LTR ERV1 1 442 -8 209 159 45 0 chr21 5406022 5406066 -29501504 + GA-rich Low_complexity Low_complexity 2 47 0 1668 223 40 3 chr21 5407915 5408291 -29499279 - MLT1B LTR MaLR 0 390 1 34887 40 2 1 chr21 5408351 5414368 -29493202 + L1PA3 LINE L1 1 6155 0 2136 164 83 8 chr21 5414601 5414997 -29492573 + MSTB LTR MaLR 1 426 0 1662 162 18 6 chr21 5416001 5416329 -29491241 + L1MA4A LINE L1 5966 6297 -6 23 78 0 0 chr21 5416405 5416456 -29491114 + AT_rich Low_complexity Low_complexity 1 51 0 352 293 73 40 chr21 5417052 5417202 -29490368 - L1ME4a LINE L1 -35 6086 5932 25 31 0 0 chr21 5417281 5417313 -29490257 + AT_rich Low_complexity Low_complexity 1 32 0 729 257 22 0 chr21 5417336 5417515 -29490055 - MLT2B1 LTR ERVL 0 520 338 2915 16 0 0 chr21 5417898 5418244 -29489326 + AluYb8 SINE Alu 1 346 0 184 273 52 26 chr21 5418870 5418947 -29488623 + L2 LINE L2 3160 3238 -75 1568 217 46 11 chr21 5419177 5419546 -29488024 + MER70B LTR ERVL 93 474 -104 262 171 0 0 chr21 5419577 5419618 -29487952 - MLT1E2 LTR MaLR -570 56 16 2961 216 54 11 chr21 5420110 5420408 -29487162 + MER45B DNA AcHobo 243 527 -1054 2612 83 11 0 chr21 5420408 5420759 -29486811 + THE1A LTR MaLR 1 355 0 2961 216 54 11 chr21 5420759 5421215 -29486355 + MER45B DNA AcHobo 527 1030 -10 21 0 0 0 chr21 5421445 5421466 -29486104 + AT_rich Low_complexity Low_complexity 1 21 0 6266 252 21 24 chr21 5422131 5424558 -29483012 + L1PA11 LINE L1 1 3208 -4376 11678 158 12 15 chr21 5424561 5426861 -29480709 + L1PA11 LINE L1 3671 5963 -1621 2514 91 0 19 chr21 5426861 5427223 -29480347 - THE1A LTR MaLR 0 355 1 10808 110 1 1 chr21 5427223 5428779 -29478791 - THE1A-int LTR MaLR -25 1555 1 2553 107 3 0 chr21 5428779 5429133 -29478437 - THE1A LTR MaLR 0 355 1 5553 108 34 25 chr21 5429133 5430789 -29476781 + L1PA11 LINE L1 5959 7612 0 25 0 0 0 chr21 5431170 5431195 -29476375 + AT_rich Low_complexity Low_complexity 1 25 0 899 122 96 0 chr21 5431210 5431366 -29476204 + L1PA13 LINE L1 5974 6144 -19 2120 110 7 0 chr21 5432567 5432848 -29474722 + AluSq SINE Alu 1 283 -30 3873 168 22 7 chr21 5433067 5433801 -29473769 - L1MB1 LINE L1 0 6168 5424 1229 178 9 9 chr21 5433821 5434034 -29473536 + AluJb SINE Alu 87 299 -13 448 64 0 77 chr21 5434037 5434115 -29473455 + L1M3 LINE L1 5363 5434 -734 261 0 0 0 chr21 5434330 5434359 -29473211 + (T)n Simple_repeat Simple_repeat 1 29 0 423 276 145 28 chr21 5435662 5435945 -29471625 + L2 LINE L2 1363 1678 -1636 257 287 32 76 chr21 5435988 5436145 -29471425 + L2 LINE L2 1809 1958 -1356 311 260 51 117 chr21 5436162 5436358 -29471212 - L2 LINE L2 0 3313 3131 1295 255 65 19 chr21 5436373 5436788 -29470782 - MER70B LTR ERVL -144 434 1 1325 293 70 25 chr21 5436803 5437453 -29470117 - L2 LINE L2 -192 3121 2433 943 266 83 8 chr21 5437615 5438008 -29469562 - L2 LINE L2 -1208 2106 1657 494 245 56 21 chr21 5438010 5438153 -29469417 + L2 LINE L2 2397 2544 -770 731 221 81 81 chr21 5438191 5438675 -29468895 + L1MC5 LINE L1 7193 7676 -285 757 144 8 8 chr21 5438691 5438855 -29468715 - AluJ SINE Alu 0 329 166 675 154 0 0 chr21 5438853 5438957 -29468613 - AluJ SINE Alu -203 109 6 3623 53 0 7 chr21 5439278 5439729 -29467841 + LTR7 LTR ERV1 1 448 -2 18728 104 10 18 chr21 5439731 5442749 -29464821 + HERVH LTR ERV1 1 2995 -4718 748 160 49 0 chr21 5442728 5442872 -29464698 + HERVH LTR ERV1 3140 3290 -4423 7750 114 4 7 chr21 5442862 5444589 -29462981 + HERVH LTR ERV1 3492 5233 -1858 1339 120 19 0 chr21 5444590 5444806 -29462764 + HERVH LTR ERV1 5600 5819 -1894 2365 84 42 13 chr21 5444806 5445185 -29462385 + HERVH LTR ERV1 7324 7713 0 2835 88 2 7 chr21 5445185 5445595 -29461975 + LTR7 LTR ERV1 1 408 -42 844 112 154 7 chr21 5447626 5447769 -29459801 + AluSp SINE Alu 137 300 -13 26 0 0 0 chr21 5448521 5448547 -29459023 + AT_rich Low_complexity Low_complexity 1 26 0 573 328 44 41 chr21 5449642 5449980 -29457590 + L1PBb LINE L1 14 352 -6497 9697 233 23 24 chr21 5451235 5452603 -29454967 + L1PBb LINE L1 1452 2820 -4028 2201 124 7 0 chr21 5452603 5452910 -29454660 + AluSg SINE Alu 1 309 -1 9697 233 23 24 chr21 5452910 5455128 -29452442 + L1PBb LINE L1 2820 5122 -1726 2349 64 0 14 chr21 5455158 5455455 -29452115 + AluY SINE Alu 16 308 -3 4092 147 8 0 chr21 5455457 5456124 -29451446 + L1PA16 LINE L1 5491 6162 -4 442 250 76 0 chr21 5456281 5456413 -29451157 + Charlie7 DNA MER1_type 1 142 -2470 303 200 338 0 chr21 5456516 5456596 -29450974 + FLAM_C SINE Alu 1 107 -26 234 62 0 0 chr21 5456651 5456683 -29450887 + (GGAA)n Simple_repeat Simple_repeat 2 33 0 921 227 0 0 chr21 5456685 5456857 -29450713 + AluJb SINE Alu 136 307 -5 255 152 0 0 chr21 5457110 5457156 -29450414 + GA-rich Low_complexity Low_complexity 3 48 0 2092 128 3 10 chr21 5457201 5457505 -29450065 + AluSg SINE Alu 1 302 -8 436 381 75 54 chr21 5458117 5458466 -29449104 - L2 LINE L2 0 3272 2917 511 252 35 17 chr21 5458819 5459072 -29448498 - L1ME LINE L1 -5183 1764 1385 732 298 59 32 chr21 5460250 5460589 -29446981 + LTR16C LTR ERVL 131 478 -13 189 107 0 0 chr21 5461045 5461073 -29446497 + (TG)n Simple_repeat Simple_repeat 2 29 0 907 194 26 31 chr21 5462035 5462226 -29445344 + MER20 DNA MER1_type 29 218 -1 10032 165 22 23 chr21 5464432 5464767 -29442803 + L1M1 LINE L1 1868 2202 -5363 2405 94 3 0 chr21 5464767 5465076 -29442494 - AluSp SINE Alu -3 310 1 10032 165 22 23 chr21 5465076 5467289 -29440281 + L1M1 LINE L1 2202 4417 -3148 227 29 0 0 chr21 5467292 5467326 -29440244 - L1PA2 LINE L1 -4 6151 6118 1077 213 41 0 chr21 5467321 5467612 -29439958 + L1M1 LINE L1 4408 4710 -2855 478 219 21 96 chr21 5467622 5467709 -29439861 + L1M1 LINE L1 4798 4866 -2699 1692 179 0 21 chr21 5467709 5468024 -29439546 + AluSx SINE Alu 1 309 0 478 219 21 96 chr21 5468024 5468122 -29439448 + L1M1 LINE L1 4866 4970 -2595 11294 189 20 11 chr21 5468120 5468176 -29439394 - L1P LINE L1 -1406 4740 4686 2127 140 73 12 chr21 5468176 5468519 -29439051 - THE1B LTR MaLR 0 364 1 11294 189 20 11 chr21 5468519 5470760 -29436810 - L1P LINE L1 -1460 4686 2422 31030 68 3 3 chr21 5470767 5475745 -29431825 + L1PA6 LINE L1 1178 6154 0 1125 245 0 8 chr21 5475992 5476233 -29431337 - MER8 DNA MER2_type 0 239 1 480 334 29 15 chr21 5477921 5478134 -29429436 - MIR SINE MIR -3 259 45 366 295 27 40 chr21 5479049 5479198 -29428372 - AluYb8 SINE Alu -7 301 155 219 309 15 0 chr21 5479607 5479675 -29427895 + L2 LINE L2 3242 3310 -3 1022 269 58 72 chr21 5479920 5480473 -29427097 + MLT1H LTR MaLR 1 545 -4 37 52 0 0 chr21 5480742 5480800 -29426770 + AT_rich Low_complexity Low_complexity 1 58 0 783 71 0 0 chr21 5481381 5481479 -29426091 + L1PA3 LINE L1 1 98 -6048 36132 37 4 1 chr21 5481477 5486870 -29420700 + L1PA3 LINE L1 623 6155 0 2529 65 0 0 chr21 5487514 5487820 -29419750 - AluY SINE Alu -5 306 1 459 295 16 0 chr21 5487979 5488101 -29419469 + MLT1I LTR MaLR 67 190 -219 987 205 0 0 chr21 5488483 5488668 -29418902 - L1PB4 LINE L1 -5 6151 5967 203 184 0 0 chr21 5488737 5488775 -29418795 + A-rich Low_complexity Low_complexity 1 38 0 7288 21 9 2 chr21 5490244 5491107 -29416463 - L1PA3 LINE L1 0 6155 5287 1069 58 0 0 chr21 5491106 5491245 -29416325 + L1P LINE L1 1920 2058 -4088 32 57 0 0 chr21 5491391 5491444 -29416126 + AT_rich Low_complexity Low_complexity 1 53 0 299 264 21 50 chr21 5491881 5492021 -29415549 - MIR SINE MIR -10 252 117 912 263 32 53 chr21 5492062 5492125 -29415445 + L1M4c LINE L1 2046 2109 -4397 2137 123 0 0 chr21 5492125 5492426 -29415144 - AluY SINE Alu -10 301 1 912 263 32 53 chr21 5492426 5492906 -29414664 + L1M4c LINE L1 2109 2620 -3886 369 145 118 0 chr21 5492907 5492983 -29414587 + L1M4c LINE L1 3815 3899 -2483 821 241 36 22 chr21 5493011 5493886 -29413684 + L1MB7 LINE L1 2582 3443 -2939 2186 134 3 0 chr21 5493886 5494192 -29413378 + AluSx SINE Alu 1 307 -5 821 241 36 22 chr21 5494192 5495203 -29412367 + L1MB7 LINE L1 3443 4730 -1652 4325 147 58 37 chr21 5495194 5496025 -29411545 + L1PB1 LINE L1 728 1575 -6010 8950 241 22 9 chr21 5496037 5499018 -29408552 + L1PB1 LINE L1 2804 5803 -1781 299 164 0 0 chr21 5499019 5499080 -29408490 + LTR1B LTR ERV1 1 61 -765 1405 106 55 5 chr21 5499084 5499301 -29408269 - MER52-int LTR ERV1 -4571 2520 2293 26119 152 7 11 chr21 5499299 5503389 -29404181 + LTR1B-int LTR ERV1 2527 6601 -490 1496 151 73 0 chr21 5503399 5503658 -29403912 + LTR1B-int LTR ERV1 6745 7022 -69 1426 252 121 53 chr21 5503660 5504370 -29403200 + LTR1B LTR ERV1 69 826 0 5775 161 14 12 chr21 5504370 5506154 -29401416 + L1PB1 LINE L1 5802 7587 -2 4297 189 38 5 chr21 5506161 5507695 -29399875 + L1MB7 LINE L1 4711 6294 -126 4223 165 14 0 chr21 5507708 5508434 -29399136 - L1PB4 LINE L1 -20 6136 5401 592 85 217 0 chr21 5508435 5508541 -29399029 + L1MB7 LINE L1 6276 6404 -16 27 29 0 0 chr21 5508541 5508575 -29398995 + AT_rich Low_complexity Low_complexity 1 34 0 877 263 80 112 chr21 5508804 5509802 -29397768 + MER52A LTR ERV1 640 1755 0 3495 182 55 34 chr21 5509802 5510533 -29397037 + MER52A-int LTR ERV1 2 747 -6344 1408 144 7 88 chr21 5510530 5510814 -29396756 + MER52A-int LTR ERV1 878 1138 -5953 2174 151 58 2 chr21 5511130 5511542 -29396028 + LTR19A LTR ERV1 1 435 -51 2042 51 0 0 chr21 5511543 5511796 -29395774 - L1PA5 LINE L1 -204 5950 5698 1473 74 5 10 chr21 5511796 5511999 -29395571 + L1PA5 LINE L1 5953 6154 0 359 85 17 0 chr21 5512002 5512061 -29395509 + LTR19A LTR ERV1 425 484 -2 457 275 38 56 chr21 5512334 5512494 -29395076 - MIR3 SINE MIR -21 187 31 705 109 16 16 chr21 5515681 5515809 -29391761 + (GGAA)n Simple_repeat Simple_repeat 2 129 0 210 37 0 0 chr21 5517806 5517833 -29389737 + (CA)n Simple_repeat Simple_repeat 2 28 0 228 86 0 0 chr21 5518120 5518155 -29389415 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 577 259 77 41 chr21 5518365 5518585 -29388985 - MLT1D LTR MaLR -263 242 15 1044 314 71 35 chr21 5518666 5519089 -29388481 + HAL1 LINE L1 562 999 -1508 311 290 44 23 chr21 5519144 5519388 -29388182 + L1MEc LINE L1 19 1799 -777 1923 286 71 8 chr21 5519385 5520127 -29387443 + L1ME1 LINE L1 193 981 -5415 1098 274 46 24 chr21 5520168 5520709 -29386861 + L1ME1 LINE L1 1094 1646 -4750 1688 217 67 22 chr21 5520946 5521393 -29386177 + MLT1C LTR MaLR 1 467 0 331 289 61 34 chr21 5521501 5521600 -29385970 + L1ME1 LINE L1 3173 3268 -2947 7005 66 1 0 chr21 5521600 5522991 -29384579 + L1PA7 LINE L1 4761 6153 -1 331 289 61 34 chr21 5522991 5523185 -29384385 + L1ME1 LINE L1 3268 3474 -2741 2217 217 35 29 chr21 5523169 5523765 -29383805 + L1ME1 LINE L1 4593 5195 -1020 2278 126 8 30 chr21 5523765 5524137 -29383433 - THE1B LTR MaLR 0 364 1 2217 217 35 29 chr21 5524137 5524194 -29383376 + L1ME1 LINE L1 5195 5250 -965 1342 189 36 8 chr21 5524217 5524466 -29383104 - AluJo SINE Alu -56 256 1 2362 252 31 9 chr21 5524484 5525279 -29382291 + L1ME1 LINE L1 5245 6054 -181 326 276 63 29 chr21 5525306 5525545 -29382025 + L1MC4 LINE L1 6983 7229 -813 32 0 0 0 chr21 5526506 5526538 -29381032 + AT_rich Low_complexity Low_complexity 1 32 0 236 278 56 106 chr21 5526716 5526914 -29380656 - MER21A LTR ERV1 -109 822 635 619 274 36 50 chr21 5526927 5527318 -29380252 - MER21B LTR ERV1 -421 442 21 582 287 101 22 chr21 5527589 5527857 -29379713 + MER110 LTR ERV1 195 483 -8 632 171 103 20 chr21 5527959 5528105 -29379465 + LTR40b LTR ERVL 305 462 0 321 325 12 6 chr21 5529596 5529759 -29377811 + GA-rich Low_complexity Low_complexity 2 165 0 1252 209 35 60 chr21 5529982 5530351 -29377219 + MLT1A1 LTR MaLR 4 363 -2 24 0 0 0 chr21 5530460 5530484 -29377086 + AT_rich Low_complexity Low_complexity 1 24 0 1699 121 103 18 chr21 5530563 5530836 -29376734 - MER1B DNA MER1_type 0 339 44 474 88 0 0 chr21 5531414 5531482 -29376088 + (TA)n Simple_repeat Simple_repeat 2 69 0 1094 149 20 5 chr21 5534467 5534662 -29372908 + L1PB1 LINE L1 3 200 -6663 8973 121 27 5 chr21 5534654 5536586 -29370984 + L1PB1 LINE L1 625 2740 -4123 12370 193 10 7 chr21 5536575 5539764 -29367806 + L1PB1 LINE L1 3310 6508 -359 2454 118 11 0 chr21 5539802 5540167 -29367403 + L1PB1 LINE L1 6498 6866 -1 274 326 74 37 chr21 5540268 5540458 -29367112 + MIR SINE MIR 46 242 -20 23 0 0 0 chr21 5540657 5540680 -29366890 + AT_rich Low_complexity Low_complexity 1 23 0 1184 181 50 32 chr21 5541182 5541464 -29366106 - L1PB4 LINE L1 -1 6155 5869 1372 234 34 2 chr21 5542058 5542468 -29365102 + L1MA3 LINE L1 2938 3360 -2786 549 0 0 0 chr21 5542469 5542530 -29365040 + (TA)n Simple_repeat Simple_repeat 2 62 0 8374 174 10 17 chr21 5542656 5544782 -29362788 + L1MA3 LINE L1 3362 5480 -743 3624 114 15 0 chr21 5544782 5545323 -29362247 + L1PA14 LINE L1 5606 6159 -2 5548 114 2 8 chr21 5545335 5546179 -29361391 + L1MA3 LINE L1 5460 6298 -7 1392 205 52 74 chr21 5546204 5546636 -29360934 - MLT1C LTR MaLR -38 588 8 1797 214 29 78 chr21 5546642 5547127 -29360443 - MLT1C-int LTR MaLR 0 1371 911 2612 204 75 29 chr21 5547267 5548006 -29359564 - MLT1C-int LTR MaLR -477 894 4 280 133 0 22 chr21 5548008 5548053 -29359517 - MLT2C1 LTR ERVL 0 397 354 271 231 0 0 chr21 5548060 5548112 -29359458 - MLT2C1 LTR ERVL -228 169 118 1669 172 3 21 chr21 5548118 5548403 -29359167 + AluJo SINE Alu 2 281 -31 1965 120 15 19 chr21 5548453 5548777 -29358793 + L1MA8 LINE L1 5948 6270 -21 398 267 96 96 chr21 5549380 5549736 -29357834 - L1MC4a LINE L1 -1774 6034 5679 2174 106 10 10 chr21 5550369 5550672 -29356898 - AluSg SINE Alu -7 303 1 3122 81 2 0 chr21 5552290 5552711 -29354859 + L1P LINE L1 4172 4593 -1553 2099 104 3 7 chr21 5552711 5552998 -29354572 + AluSq SINE Alu 22 307 -6 1937 154 0 6 chr21 5553121 5553432 -29354138 + AluSx SINE Alu 3 311 -1 320 217 0 24 chr21 5554371 5554454 -29353116 + LTR33 LTR ERVL 441 521 0 1489 158 0 14 chr21 5554814 5555092 -29352478 + L1MA4 LINE L1 6020 6293 -7 309 267 69 74 chr21 5555696 5555913 -29351657 - L2 LINE L2 -1063 2251 2036 23 0 0 0 chr21 5556449 5556472 -29351098 + AT_rich Low_complexity Low_complexity 1 23 0 403 269 94 60 chr21 5557216 5557461 -29350109 + LTR16A LTR ERVL 19 270 -180 668 270 35 6 chr21 5557617 5557791 -29349779 + HERV16 LTR ERVL 1 179 -4817 29217 106 15 22 chr21 5558008 5564476 -29343094 + L1PA7 LINE L1 1 6469 0 1336 212 13 55 chr21 5564678 5564989 -29342581 + AluJo SINE Alu 1 298 -4 2258 140 6 25 chr21 5565085 5565449 -29342121 + THE1B LTR MaLR 8 364 0 11471 108 2 0 chr21 5565449 5567025 -29340545 + THE1B-int LTR MaLR 1 1580 0 1984 147 46 26 chr21 5567025 5567372 -29340198 + THE1B LTR MaLR 1 354 -10 21 0 0 0 chr21 5568159 5568180 -29339390 + AT_rich Low_complexity Low_complexity 1 21 0 294 224 17 0 chr21 5570580 5570638 -29336932 + L1ME LINE L1 5521 5579 -542 767 321 91 13 chr21 5570685 5571242 -29336328 + L2 LINE L2 2550 3171 -142 1086 141 0 6 chr21 5571371 5571541 -29336029 + AluSg/x SINE Alu 136 304 -6 274 277 0 0 chr21 5571544 5571609 -29335961 + L2 LINE L2 3226 3290 -23 251 279 0 0 chr21 5571908 5571987 -29335583 + A-rich Low_complexity Low_complexity 1 79 0 1745 72 0 79 chr21 5572442 5572720 -29334850 - L1P LINE L1 -1188 4958 4703 327 318 91 34 chr21 5573551 5573815 -29333755 + HAL1 LINE L1 2228 2506 -1 992 353 69 44 chr21 5573832 5573986 -29333584 - L2 LINE L2 -1300 2014 1865 1760 171 0 35 chr21 5573986 5574302 -29333268 + AluJb SINE Alu 1 305 -7 992 353 69 44 chr21 5574302 5575071 -29332499 - L2 LINE L2 -1449 1865 1068 194 278 111 14 chr21 5575204 5575276 -29332294 - L2 LINE L2 -2254 1060 982 364 342 88 67 chr21 5576390 5576901 -29330669 - L2 LINE L2 -834 2480 1959 26 50 0 0 chr21 5576986 5577026 -29330544 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr21 5578813 5578833 -29328737 + (A)n Simple_repeat Simple_repeat 1 20 0 1789 135 11 11 chr21 5579043 5579351 -29328219 - AluSx SINE Alu 0 310 3 538 231 15 0 chr21 5579780 5579914 -29327656 + L1PB4 LINE L1 6021 6156 0 482 205 232 33 chr21 5579985 5580136 -29327434 + MER5A DNA MER1_type 9 189 0 869 152 0 14 chr21 5584560 5584698 -29322872 + FAM SINE Alu 37 172 -13 23 0 0 0 chr21 5585012 5585035 -29322535 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 5587053 5587075 -29320495 + AT_rich Low_complexity Low_complexity 1 22 0 14942 80 12 1 chr21 5589145 5591115 -29316455 + L1PA4 LINE L1 2 1991 -4155 21778 46 3 1 chr21 5591085 5595399 -29312171 + L1PA4 LINE L1 1839 6151 -4 552 252 66 87 chr21 5595402 5595660 -29311910 + L1M4b LINE L1 64 626 -6229 457 262 62 108 chr21 5595781 5596151 -29311419 + L1M4b LINE L1 836 1188 -5667 248 75 0 25 chr21 5596265 5596305 -29311265 + (GAAA)n Simple_repeat Simple_repeat 2 40 0 327 246 33 76 chr21 5596307 5596518 -29311052 + L1M4b LINE L1 1240 1441 -5418 12164 199 41 15 chr21 5596521 5598929 -29308641 + L1M1 LINE L1 14 2482 -5083 2508 195 19 41 chr21 5598925 5599822 -29307748 + L1M1 LINE L1 3475 4409 -3156 438 187 0 0 chr21 5599822 5599897 -29307673 + THE1C LTR MaLR 301 375 0 7472 121 19 2 chr21 5599897 5600968 -29306602 + THE1C-int LTR MaLR 1 1089 -491 22688 156 15 7 chr21 5600971 5605097 -29302473 + L1P4 LINE L1 1363 5521 -647 829 267 50 5 chr21 5605101 5605303 -29302267 + L1M4b LINE L1 3419 3629 -3328 4843 93 9 9 chr21 5605305 5605952 -29301618 + L1PA10 LINE L1 5517 6163 -5 485 243 40 36 chr21 5605996 5606218 -29301352 + L1M4b LINE L1 1536 1758 -5097 952 180 39 0 chr21 5606322 5606500 -29301070 + MER2 DNA MER2_type 159 343 -1 2266 182 55 16 chr21 5606500 5606988 -29300582 + L1MA9 LINE L1 5785 6291 -21 1099 239 46 46 chr21 5607011 5607400 -29300170 + L1M4b LINE L1 4776 5164 -1793 1248 224 0 20 chr21 5607415 5607670 -29299900 + AluJo SINE Alu 1 250 -62 6094 199 15 8 chr21 5607685 5608888 -29298682 + L1PA13 LINE L1 1181 2403 -4394 2596 131 11 0 chr21 5608888 5609248 -29298322 + THE1B LTR MaLR 1 364 0 6094 199 15 8 chr21 5609248 5609340 -29298230 + L1PA13 LINE L1 2403 2493 -4304 7354 58 14 17 chr21 5609342 5610946 -29296624 - SVA Other Other -723 1386 19 239 95 191 0 chr21 5610946 5610988 -29296582 + LTR9B LTR ERV1 88 137 -507 11959 225 26 2 chr21 5611081 5612385 -29295185 + L1PA13 LINE L1 2480 3751 -3046 377 20 20 0 chr21 5612385 5612435 -29295135 + (CA)n Simple_repeat Simple_repeat 2 52 0 11959 225 26 2 chr21 5612435 5613894 -29293676 + L1PA13 LINE L1 3751 5309 -1488 1734 164 38 67 chr21 5614827 5615198 -29292372 + LTR12 LTR ERV1 81 440 -231 3940 210 67 49 chr21 5615215 5616302 -29291268 + HERV9 LTR ERV1 54 1160 -7239 29067 148 12 14 chr21 5616340 5623278 -29284292 + HERV9 LTR ERV1 1361 8157 -242 6794 8 0 3 chr21 5623279 5624030 -29283540 - L1HS LINE L1 -1 6154 5406 1785 139 7 0 chr21 5624030 5624304 -29283266 + HERV9 LTR ERV1 8120 8395 -4 1012 231 101 32 chr21 5624338 5624684 -29282886 + pTR5 LTR ERV1 1850 2219 -219 1922 152 3 3 chr21 5625248 5625544 -29282026 + AluJo SINE Alu 1 296 -16 2240 185 27 6 chr21 5625629 5626115 -29281455 + L1PA13 LINE L1 5295 5790 -1007 30565 108 8 18 chr21 5626140 5626541 -29281029 + L1PA7 LINE L1 3 407 -6062 252 0 0 0 chr21 5626541 5626569 -29281001 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 30565 108 8 18 chr21 5626569 5629411 -29278159 + L1PA7 LINE L1 407 3276 -3193 1659 124 56 12 chr21 5629411 5629661 -29277909 + AluY SINE Alu 33 293 -18 30565 108 8 18 chr21 5629661 5632881 -29274689 + L1PA7 LINE L1 3276 6432 -37 10047 226 27 17 chr21 5632879 5635759 -29271811 + L1PA12 LINE L1 2626 5536 -2048 6342 168 9 7 chr21 5635810 5636849 -29270721 + L1MA3 LINE L1 12 1052 -6513 864 200 50 0 chr21 5636850 5637010 -29270560 + L1MA3 LINE L1 1856 2023 -5542 10539 176 23 28 chr21 5637004 5637645 -29269925 + L1MA3 LINE L1 2693 3336 -4229 4251 54 0 2 chr21 5637645 5638143 -29269427 + L1PA7 LINE L1 5651 6147 -7 10539 176 23 28 chr21 5638143 5639162 -29268408 + L1MA3 LINE L1 3336 4359 -3206 1353 180 83 55 chr21 5639162 5639451 -29268119 + AluJb SINE Alu 4 300 -12 10539 176 23 28 chr21 5639451 5639584 -29267986 + L1MA3 LINE L1 4359 4491 -3074 1581 180 32 4 chr21 5639584 5639862 -29267708 + AluJb SINE Alu 10 295 -17 10539 176 23 28 chr21 5639862 5641305 -29266265 + L1MA3 LINE L1 4491 5909 -1656 1439 198 0 34 chr21 5641309 5641572 -29265998 + AluJb SINE Alu 4 257 -55 678 34 112 0 chr21 5641581 5641670 -29265900 + L1MA3 LINE L1 5854 5952 -353 6653 138 27 9 chr21 5641714 5641787 -29265783 + L1MA3 LINE L1 5895 5965 -1759 2084 144 3 0 chr21 5641787 5642085 -29265485 + AluSx SINE Alu 1 299 -13 6653 138 27 9 chr21 5642085 5643808 -29263762 + L1MA3 LINE L1 5965 7724 0 537 185 140 0 chr21 5643789 5643901 -29263669 + L1 LINE L1 4133 4275 -1871 405 0 0 0 chr21 5643901 5643946 -29263624 + (CA)n Simple_repeat Simple_repeat 2 46 0 537 185 140 0 chr21 5643946 5643990 -29263580 + L1 LINE L1 4275 4311 -1835 1948 237 26 22 chr21 5644246 5644710 -29262860 - MLT1C LTR MaLR 0 467 2 37523 37 1 2 chr21 5645321 5651372 -29256198 + L1PA2 LINE L1 1 6172 0 1405 158 56 8 chr21 5651378 5651644 -29255926 + L1MB3 LINE L1 5889 6167 -16 269 105 23 75 chr21 5651651 5651784 -29255786 + (TA)n Simple_repeat Simple_repeat 1 126 0 43 0 0 0 chr21 5651799 5651842 -29255728 + AT_rich Low_complexity Low_complexity 1 43 0 323 303 119 0 chr21 5653121 5653230 -29254340 + Charlie8 DNA MER1_type 155 276 -2141 27 29 0 0 chr21 5653585 5653619 -29253951 + AT_rich Low_complexity Low_complexity 1 34 0 2368 103 0 3 chr21 5653693 5654003 -29253567 - AluSq SINE Alu -4 309 1 1722 140 30 0 chr21 5654234 5654394 -29253176 - L1MA4 LINE L1 -7 6293 6139 1900 107 7 37 chr21 5654394 5654714 -29252856 + AluSx SINE Alu 5 312 0 1722 140 30 0 chr21 5654714 5654853 -29252717 - L1MA4 LINE L1 -161 6139 5985 23 0 0 0 chr21 5655277 5655300 -29252270 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr21 5655695 5655720 -29251850 + (TG)n Simple_repeat Simple_repeat 1 25 0 1129 107 0 6 chr21 5656686 5656845 -29250725 - L1PA13 LINE L1 -6 6157 6000 302 308 58 23 chr21 5657155 5657327 -29250243 - HAL1 LINE L1 -936 1571 1394 3256 119 22 2 chr21 5657327 5657771 -29249799 - MLT2A2 LTR ERVL 0 453 1 20397 77 5 2 chr21 5657771 5660356 -29247214 - HERVL-A2 LTR ERVL 0 5654 3063 3353 121 13 0 chr21 5660370 5660817 -29246753 - MLT2A2 LTR ERVL 0 453 1 2843 101 0 0 chr21 5661380 5661735 -29245835 + THE1A LTR MaLR 1 355 0 12486 102 2 1 chr21 5661735 5663312 -29244258 + THE1A-int LTR MaLR 1 1580 0 2628 81 60 0 chr21 5663312 5663647 -29243923 + THE1A LTR MaLR 1 355 0 734 209 57 0 chr21 5663771 5663929 -29243641 - L1MC3 LINE L1 0 7785 7619 3147 172 18 2 chr21 5663939 5664486 -29243084 - L1MC3 LINE L1 -322 7463 6908 5520 167 26 14 chr21 5665695 5666334 -29241236 - L1PB4 LINE L1 -3 6153 5523 1730 171 3 17 chr21 5666334 5666627 -29240943 - AluJo SINE Alu -21 291 3 5520 167 26 14 chr21 5666627 5667843 -29239727 - L1PB4 LINE L1 -633 5523 4276 1760 227 146 78 chr21 5668077 5668654 -29238916 - MLT1E2 LTR MaLR -8 616 1 3995 218 53 24 chr21 5669819 5670331 -29237239 + L1PBa LINE L1 6 501 -6362 1733 91 56 4 chr21 5670331 5670583 -29236987 + AluY SINE Alu 36 300 -11 3995 218 53 24 chr21 5670583 5671083 -29236487 + L1PBa LINE L1 501 1048 -5815 5996 144 25 13 chr21 5671084 5672195 -29235375 + L1PBa LINE L1 1093 2359 -4504 265 231 0 0 chr21 5672195 5672247 -29235323 + LTR30 LTR ERV1 1 52 -670 1440 98 35 17 chr21 5672247 5672499 -29235071 + LTR12 LTR ERV1 38 2039 -399 285 198 37 25 chr21 5672502 5672583 -29234987 + LTR30 LTR ERV1 561 642 -80 749 110 0 0 chr21 5672586 5672686 -29234884 + LTR12 LTR ERV1 572 671 0 4822 216 17 9 chr21 5672687 5674068 -29233502 + L1PBa LINE L1 2424 3803 -3059 423 119 34 0 chr21 5674068 5674127 -29233443 - AluS SINE Alu -232 81 21 292 211 35 0 chr21 5674158 5674215 -29233355 - MLT1F1 LTR MaLR -332 235 177 21 57 0 0 chr21 5674246 5674281 -29233289 + AT_rich Low_complexity Low_complexity 1 35 0 451 300 86 64 chr21 5674411 5674678 -29232892 - LTR67 LTR ERVL -256 301 29 1618 159 81 4 chr21 5676060 5676331 -29231239 + AluJo SINE Alu 2 293 -19 1774 213 47 63 chr21 5676338 5676366 -29231204 - MLT2B1 LTR ERVL -20 500 473 294 73 0 0 chr21 5676366 5676407 -29231163 + (TG)n Simple_repeat Simple_repeat 2 42 0 1774 213 47 63 chr21 5676407 5676886 -29230684 - MLT2B1 LTR ERVL -47 473 1 1845 219 69 79 chr21 5676931 5677589 -29229981 + MLT1E2 LTR MaLR 1 626 0 647 327 70 43 chr21 5677589 5677951 -29229619 - ERVL LTR ERVL -1278 4486 4102 2881 115 26 28 chr21 5677951 5678378 -29229192 + MSTA LTR MaLR 3 428 0 647 327 70 43 chr21 5678378 5678574 -29228996 - ERVL LTR ERVL -1662 4102 3913 2151 85 61 0 chr21 5678764 5679057 -29228513 - AluSp SINE Alu -2 311 1 783 149 12 38 chr21 5679399 5679661 -29227909 + AluJ SINE Alu 1 312 0 2244 97 3 3 chr21 5679663 5679963 -29227607 + AluY SINE Alu 3 302 -9 292 277 132 57 chr21 5680113 5680272 -29227298 - ERVL LTR ERVL -2549 3105 2935 1503 160 12 20 chr21 5680836 5681080 -29226490 + MLT1D LTR MaLR 1 242 -263 560 180 137 43 chr21 5681076 5681215 -29226355 + MLT1D LTR MaLR 354 505 0 1656 158 0 8 chr21 5681319 5681584 -29225986 + AluJo SINE Alu 22 284 -28 22 0 0 0 chr21 5681584 5681606 -29225964 + AT_rich Low_complexity Low_complexity 1 22 0 2239 92 7 0 chr21 5681865 5682196 -29225374 + AluSp SINE Alu 1 333 0 34 24 0 0 chr21 5682788 5682829 -29224741 + AT_rich Low_complexity Low_complexity 1 41 0 2662 132 0 3 chr21 5683052 5683417 -29224153 - THE1B LTR MaLR 0 364 1 2070 188 28 19 chr21 5683458 5683820 -29223750 + MLT1A1 LTR MaLR 1 365 0 275 261 15 100 chr21 5683901 5683987 -29223583 + MER94 DNA DNA 11 84 -50 2259 103 0 7 chr21 5683987 5684288 -29223282 + AluY SINE Alu 1 299 -12 275 261 15 100 chr21 5684288 5684331 -29223239 + MER94 DNA DNA 84 129 -5 1867 142 3 39 chr21 5684845 5685154 -29222416 + AluSp SINE Alu 1 298 -15 219 242 0 0 chr21 5685685 5685747 -29221823 + (TATATG)n Simple_repeat Simple_repeat 6 67 0 874 219 127 0 chr21 5686614 5686819 -29220751 - MIR SINE MIR -21 241 11 2024 165 105 33 chr21 5686886 5687055 -29220515 + MSTA LTR MaLR 1 156 -272 1841 131 11 0 chr21 5687055 5687330 -29220240 + AluSx SINE Alu 16 293 -19 2024 165 105 33 chr21 5687330 5687559 -29220011 + MSTA LTR MaLR 156 428 0 252 184 0 0 chr21 5687746 5687795 -29219775 + (TA)n Simple_repeat Simple_repeat 1 49 0 229 149 0 0 chr21 5687798 5687845 -29219725 - LTR66 LTR ERVL -397 213 167 1696 154 19 0 chr21 5687901 5688116 -29219454 - AluJo SINE Alu -41 271 1 331 161 0 17 chr21 5688119 5688179 -29219391 - Alu SINE Alu -254 48 1 709 237 17 35 chr21 5688352 5688525 -29219045 - MER45A DNA AcHobo -8 170 1 645 243 14 0 chr21 5688571 5688711 -29218859 + MER34 LTR ERV1 4 145 -397 1991 171 64 9 chr21 5688860 5689206 -29218364 + MLT1A1 LTR MaLR 1 365 0 222 37 0 0 chr21 5690660 5690687 -29216883 + (GAA)n Simple_repeat Simple_repeat 2 28 0 193 114 0 45 chr21 5690784 5690828 -29216742 + (TAA)n Simple_repeat Simple_repeat 1 42 0 19195 79 7 1 chr21 5691287 5693869 -29213701 + L1PA6 LINE L1 1380 3976 -2170 37824 35 1 1 chr21 5693877 5699769 -29207801 + L1PA2 LINE L1 1 6018 -137 351 0 0 0 chr21 5699772 5699811 -29207759 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 11603 65 2 2 chr21 5699811 5701997 -29205573 + L1PA6 LINE L1 3965 6154 0 2175 112 0 3 chr21 5702058 5702353 -29205217 - AluSx SINE Alu -18 294 1 374 237 32 32 chr21 5702637 5702730 -29204840 - MER5A DNA MER1_type -79 110 18 3939 98 2 0 chr21 5702825 5703333 -29204237 - L1PB1 LINE L1 0 6151 5643 2108 253 66 9 chr21 5705456 5705641 -29201929 - MER119 DNA MER1_type -2 581 408 1755 144 17 34 chr21 5705641 5705939 -29201631 - AluJo SINE Alu -19 293 1 2108 253 66 9 chr21 5705939 5705961 -29201609 - MER119 DNA MER1_type -175 408 389 2805 221 5 19 chr21 5705961 5706536 -29201034 - MLT1F1 LTR MaLR 0 567 1 2108 253 66 9 chr21 5706536 5706873 -29200697 - MER119 DNA MER1_type -194 389 5 30 45 0 0 chr21 5707020 5707064 -29200506 + AT_rich Low_complexity Low_complexity 1 44 0 405 243 65 0 chr21 5707393 5707500 -29200070 + HAL1 LINE L1 28 141 -2366 2578 52 7 0 chr21 5708105 5708412 -29199158 - AluY SINE Alu -2 309 1 364 217 76 0 chr21 5708463 5708555 -29199015 - L1MC4 LINE L1 -2 8040 7942 497 191 0 0 chr21 5708634 5708723 -29198847 - L1MC4 LINE L1 -148 7894 7806 2188 99 0 7 chr21 5708890 5709183 -29198387 + AluSc SINE Alu 1 291 -18 646 249 88 80 chr21 5709330 5709346 -29198224 + HAL1 LINE L1 2015 2029 -478 405 0 0 0 chr21 5709346 5709391 -29198179 + (CA)n Simple_repeat Simple_repeat 2 46 0 646 249 88 80 chr21 5709391 5709464 -29198106 + HAL1 LINE L1 2029 2100 -407 2467 253 6 12 chr21 5709464 5709981 -29197589 - LTR40a LTR ERVL -4 515 2 646 249 88 80 chr21 5709981 5710379 -29197191 + HAL1 LINE L1 2100 2507 0 861 163 8 0 chr21 5710386 5710515 -29197055 + FLAM_A SINE Alu 1 130 -3 1935 159 0 13 chr21 5710520 5710654 -29196916 + AluJo SINE Alu 3 137 -175 2111 107 3 58 chr21 5710654 5710982 -29196588 + AluSx SINE Alu 1 310 -2 1935 159 0 13 chr21 5710982 5711161 -29196409 + AluJo SINE Alu 137 312 0 301 314 25 62 chr21 5711811 5712053 -29195517 - L1ME4a LINE L1 -84 6037 5805 2121 110 23 19 chr21 5712074 5712384 -29195186 - AluSx SINE Alu -1 311 1 277 136 0 23 chr21 5713315 5713391 -29194179 - AluSx SINE Alu 0 315 241 1218 130 0 11 chr21 5713391 5713568 -29194002 - AluSx SINE Alu -137 175 1 1906 143 21 7 chr21 5713594 5713881 -29193689 + AluSx SINE Alu 14 304 -8 379 234 48 32 chr21 5713951 5714075 -29193495 + HAL1 LINE L1 829 954 -1553 24 32 0 0 chr21 5714075 5714106 -29193464 + AT_rich Low_complexity Low_complexity 1 31 0 1862 276 71 58 chr21 5714301 5715387 -29192183 + HAL1 LINE L1 1271 2373 -134 772 226 0 8 chr21 5715387 5715520 -29192050 + FLAM_A SINE Alu 1 132 -1 1862 276 71 58 chr21 5715520 5715579 -29191991 + HAL1 LINE L1 2373 2430 -77 744 173 24 4 chr21 5715579 5715828 -29191742 + GA-rich Low_complexity Low_complexity 1 254 0 215 200 0 0 chr21 5715970 5716005 -29191565 + polypurine Low_complexity Low_complexity 3 37 0 535 154 26 0 chr21 5716822 5716900 -29190670 - AluJo SINE Alu -14 298 219 850 188 7 0 chr21 5716896 5717034 -29190536 - AluJo SINE Alu -172 140 2 2114 116 28 0 chr21 5717041 5717325 -29190245 - AluSx SINE Alu -20 292 1 252 295 71 89 chr21 5717483 5717595 -29189975 + MIR SINE MIR 35 144 -64 1644 133 38 44 chr21 5717609 5718045 -29189525 + AluSq SINE Alu 1 434 0 185 272 110 37 chr21 5718624 5718760 -29188810 - MIR3 SINE MIR -5 203 58 2181 128 0 3 chr21 5719054 5719351 -29188219 + AluSx SINE Alu 1 296 -16 331 248 78 47 chr21 5720402 5720531 -29187039 + MIR SINE MIR 121 253 -9 323 316 74 62 chr21 5721499 5721838 -29185732 - LTR16C LTR ERVL -31 460 118 1406 174 23 72 chr21 5722114 5722256 -29185314 + AluJo SINE Alu 1 122 -190 2339 81 3 0 chr21 5722256 5722551 -29185019 + AluSp SINE Alu 2 297 -16 1406 174 23 72 chr21 5722551 5722712 -29184858 + AluJo SINE Alu 122 289 -23 23 78 0 0 chr21 5722957 5723008 -29184562 + AT_rich Low_complexity Low_complexity 1 51 0 400 159 91 23 chr21 5723826 5723914 -29183656 - MLT1H LTR MaLR 0 590 474 183 80 0 0 chr21 5723926 5723951 -29183619 + (GGCTG)n Simple_repeat Simple_repeat 4 28 0 667 259 64 48 chr21 5724031 5724225 -29183345 - MLT1H LTR MaLR -213 336 136 2181 132 54 17 chr21 5724225 5724574 -29182996 - THE1B LTR MaLR -2 362 1 667 259 64 48 chr21 5724574 5724630 -29182940 - MLT1H LTR MaLR -413 136 82 2310 139 39 28 chr21 5724725 5725085 -29182485 + THE1B LTR MaLR 1 364 0 2296 98 10 0 chr21 5725129 5725435 -29182135 + AluSp SINE Alu 1 309 -4 302 273 36 9 chr21 5725766 5725876 -29181694 - MIR SINE MIR -26 236 124 1139 243 69 18 chr21 5725998 5726450 -29181120 + L1ME3A LINE L1 5474 5951 -219 1577 286 36 5 chr21 5726848 5727296 -29180274 - LTR16B LTR ERVL 0 464 3 2694 114 5 8 chr21 5727596 5727972 -29179598 - THE1C LTR MaLR 0 375 1 595 168 101 8 chr21 5728137 5728256 -29179314 + MER1B DNA MER1_type 1 130 -167 1810 89 12 4 chr21 5728255 5728503 -29179067 + MER1B DNA MER1_type 120 329 0 1896 158 20 0 chr21 5729061 5729365 -29178205 - AluSx SINE Alu -2 310 1 2207 122 0 19 chr21 5730753 5731072 -29176498 + AluSq SINE Alu 1 313 0 421 277 43 14 chr21 5731996 5732137 -29175433 - MLT1L LTR MaLR -293 322 178 2306 95 3 0 chr21 5733481 5733776 -29173794 + AluSx SINE Alu 1 296 -16 292 286 0 16 chr21 5734548 5734611 -29172959 + L2 LINE L2 3206 3267 -5 277 231 269 8 chr21 5734615 5734749 -29172821 - MIR SINE MIR -47 215 47 1937 137 3 47 chr21 5735005 5735327 -29172243 - AluJb SINE Alu -4 308 1 1059 107 7 7 chr21 5735486 5735636 -29171934 + AluSq/x SINE Alu 1 150 -163 2423 86 3 0 chr21 5736112 5736415 -29171155 - AluSg SINE Alu -6 304 1 418 217 19 130 chr21 5737921 5738082 -29169488 - LTR67 LTR ERVL -52 505 363 1829 210 47 54 chr21 5738545 5738641 -29168929 + MER119 DNA MER1_type 3 98 -485 2115 127 3 13 chr21 5738641 5738956 -29168614 + AluSx SINE Alu 1 312 0 1829 210 47 54 chr21 5738956 5739374 -29168196 + MER119 DNA MER1_type 98 513 -70 21 0 0 0 chr21 5739613 5739634 -29167936 + AT_rich Low_complexity Low_complexity 1 21 0 1900 117 95 0 chr21 5739812 5740085 -29167485 + AluSx SINE Alu 1 299 -13 1902 175 3 0 chr21 5740463 5740772 -29166798 - AluJb SINE Alu -2 310 1 1097 233 67 74 chr21 5740889 5741253 -29166317 + MLT1E LTR MaLR 193 555 -38 2066 107 0 75 chr21 5741253 5741571 -29165999 - AluSx SINE Alu -16 296 3 1097 233 67 74 chr21 5741571 5741610 -29165960 + MLT1E LTR MaLR 555 593 0 1010 219 63 49 chr21 5741610 5742019 -29165551 + L1MC4 LINE L1 7536 8031 -11 2646 128 0 31 chr21 5742796 5743210 -29164360 + MSTA LTR MaLR 1 401 -27 2285 104 3 0 chr21 5743221 5743530 -29164040 - AluSx SINE Alu -2 310 1 659 146 0 0 chr21 5744182 5744271 -29163299 - AluJ/FLAM SINE Alu -223 89 1 1585 216 116 48 chr21 5744427 5744462 -29163108 - L1MC4 LINE L1 -146 7896 7865 2057 127 0 7 chr21 5744462 5744779 -29162791 + AluSx SINE Alu 1 315 0 1585 216 116 48 chr21 5744779 5745241 -29162329 - L1MC4 LINE L1 -177 7865 7364 571 245 20 20 chr21 5745293 5745421 -29162149 + L1MC3 LINE L1 5698 5828 -1957 2011 119 3 20 chr21 5745421 5745715 -29161855 + AluSx SINE Alu 1 289 -23 571 245 20 20 chr21 5745715 5745737 -29161833 + L1MC3 LINE L1 5827 5848 -1937 829 213 68 29 chr21 5745717 5745924 -29161646 + L1ME1 LINE L1 5880 6094 -72 236 160 0 40 chr21 5745925 5745975 -29161595 + Alu SINE Alu 122 169 -134 1659 127 17 124 chr21 5746037 5746384 -29161186 - AluSx SINE Alu -2 310 1 1626 158 0 119 chr21 5746411 5746765 -29160805 - AluJb SINE Alu 0 312 1 24 0 0 0 chr21 5746781 5746805 -29160765 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 5747332 5747363 -29160207 + AT_rich Low_complexity Low_complexity 1 31 0 2147 83 7 20 chr21 5747363 5747664 -29159906 + AluSc SINE Alu 1 297 -12 477 332 24 10 chr21 5748158 5748366 -29159204 + LTR16C LTR ERVL 209 419 -72 2249 85 3 0 chr21 5748504 5748806 -29158764 + AluSq SINE Alu 1 303 0 1309 94 6 6 chr21 5749158 5749338 -29158232 - AluSg/x SINE Alu -3 307 128 560 152 43 0 chr21 5749393 5749485 -29158085 + U6 snRNA snRNA 12 107 0 1749 99 8 4 chr21 5749485 5749737 -29157833 + L1MA2 LINE L1 6048 6300 -4 183 303 20 61 chr21 5749775 5749874 -29157696 - MIR SINE MIR -150 112 18 698 189 15 15 chr21 5750042 5750241 -29157329 + FLAM_C SINE Alu 1 199 0 408 91 0 15 chr21 5750175 5750417 -29157153 + (GAAA)n Simple_repeat Simple_repeat 3 243 0 912 161 7 0 chr21 5750418 5750561 -29157009 + FRAM SINE Alu 1 140 -36 459 92 0 0 chr21 5750568 5750633 -29156937 + (GGAA)n Simple_repeat Simple_repeat 2 66 0 1977 128 42 78 chr21 5750784 5751117 -29156453 + MLT1B LTR MaLR 21 340 -50 2367 68 14 3 chr21 5751117 5751411 -29156159 + AluSp SINE Alu 2 298 -15 1977 128 42 78 chr21 5751411 5751459 -29156111 + MLT1B LTR MaLR 340 388 -2 23 0 0 0 chr21 5752380 5752403 -29155167 + AT_rich Low_complexity Low_complexity 1 23 0 2480 67 0 10 chr21 5752461 5752775 -29154795 + AluY SINE Alu 1 311 0 2331 102 0 7 chr21 5752808 5753113 -29154457 - AluSq SINE Alu -10 303 1 1389 179 145 36 chr21 5753455 5753902 -29153668 + LTR54B LTR ERV1 2 497 -1 462 219 0 0 chr21 5754015 5754120 -29153450 + GA-rich Low_complexity Low_complexity 1 105 0 2033 122 0 0 chr21 5755207 5755494 -29152076 + AluSq SINE Alu 1 287 -26 892 126 7 44 chr21 5757056 5757191 -29150379 + FLAM_C SINE Alu 1 130 -3 1141 199 6 65 chr21 5757883 5757904 -29149666 - MER33 DNA MER1_type -2269 316 295 2258 108 0 3 chr21 5757904 5758200 -29149370 + AluSx SINE Alu 1 295 -17 1141 199 6 65 chr21 5758200 5758514 -29149056 - MER33 DNA MER1_type -2290 295 1 1085 234 57 36 chr21 5760798 5761358 -29146212 - LTR48B LTR ERV1 0 644 1 447 19 0 0 chr21 5761804 5761856 -29145714 + (TG)n Simple_repeat Simple_repeat 1 52 0 1761 159 0 61 chr21 5761884 5762119 -29145451 - AluJo SINE Alu -1 311 100 2360 77 3 10 chr21 5762119 5762418 -29145152 - AluSg1 SINE Alu -12 297 1 1761 159 0 61 chr21 5762418 5762509 -29145061 - AluJo SINE Alu -212 100 5 972 148 94 20 chr21 5762535 5762738 -29144832 - L1PA16 LINE L1 -2 6164 5947 2553 44 0 0 chr21 5763029 5763323 -29144247 + AluY SINE Alu 1 294 -17 1875 142 7 3 chr21 5763719 5764027 -29143543 - AluJb SINE Alu 0 310 2 288 338 15 7 chr21 5764030 5764166 -29143404 - L1MC/D LINE L1 -1983 5825 5689 2087 140 3 0 chr21 5764168 5764468 -29143102 + AluSx SINE Alu 1 301 -11 257 194 0 28 chr21 5765054 5765126 -29142444 + T-rich Low_complexity Low_complexity 3 72 0 716 236 0 0 chr21 5765129 5765252 -29142318 - FLAM_A SINE Alu -10 123 1 2368 80 3 16 chr21 5765980 5766292 -29141278 - AluY SINE Alu -2 309 2 822 142 55 8 chr21 5766326 5766453 -29141117 + FLAM_C SINE Alu 1 133 0 30 27 0 0 chr21 5766453 5766490 -29141080 + AT_rich Low_complexity Low_complexity 1 37 0 3026 158 34 14 chr21 5767317 5767818 -29139752 - MER41E LTR ERV1 -1 511 1 2046 106 26 29 chr21 5768413 5768724 -29138846 + AluSx SINE Alu 1 310 -2 832 146 0 8 chr21 5768736 5768859 -29138711 + FLAM_C SINE Alu 3 124 -19 264 185 0 0 chr21 5769027 5769081 -29138489 + (TG)n Simple_repeat Simple_repeat 1 54 0 795 161 0 0 chr21 5769081 5769199 -29138371 - FLAM_C SINE Alu -23 120 3 277 218 0 18 chr21 5769204 5769259 -29138311 + MER5B DNA MER1_type 120 173 -5 354 203 0 0 chr21 5770096 5770155 -29137415 + AluJb SINE Alu 52 110 -192 2169 119 0 0 chr21 5770160 5770453 -29137117 - AluSx SINE Alu -16 296 4 207 0 0 0 chr21 5770482 5770505 -29137065 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 247 245 19 0 chr21 5770517 5770570 -29137000 + U7 snRNA snRNA 9 62 -1 256 170 64 0 chr21 5770852 5770899 -29136671 - AluJo SINE Alu -168 134 85 342 0 0 0 chr21 5771360 5771398 -29136172 + (T)n Simple_repeat Simple_repeat 1 38 0 2690 42 0 0 chr21 5771566 5771872 -29135698 + AluY SINE Alu 1 306 -5 493 172 0 11 chr21 5772510 5772597 -29134973 - AluSp/q SINE Alu -13 300 215 607 40 0 0 chr21 5772623 5772697 -29134873 - tRNA-Gly-GGC tRNA tRNA 0 74 1 1786 136 0 42 chr21 5772811 5773121 -29134449 + AluJo SINE Alu 1 297 -15 27 49 0 0 chr21 5773263 5773304 -29134266 + AT_rich Low_complexity Low_complexity 1 41 0 271 333 9 27 chr21 5773537 5773648 -29133922 + L3 LINE CR1 1060 1168 -409 1480 113 0 0 chr21 5773775 5773978 -29133592 + AluSg/x SINE Alu 104 306 -4 2482 57 3 3 chr21 5774071 5774370 -29133200 + AluSp SINE Alu 1 299 -14 222 253 84 24 chr21 5774509 5774592 -29132978 - L2 LINE L2 -427 2887 2800 38 51 0 0 chr21 5774676 5774735 -29132835 + AT_rich Low_complexity Low_complexity 1 59 0 2066 91 32 7 chr21 5774800 5775085 -29132485 - AluSq SINE Alu -19 294 3 2007 102 92 0 chr21 5775085 5775369 -29132201 - AluSx SINE Alu -2 310 1 403 237 0 10 chr21 5775383 5775480 -29132090 + MIR SINE MIR 100 195 -67 343 176 176 69 chr21 5775485 5775517 -29132053 + L2 LINE L2 3201 3228 -85 520 256 131 35 chr21 5775517 5775716 -29131854 - MER20 DNA MER1_type -1 218 1 343 176 176 69 chr21 5775716 5775785 -29131785 + L2 LINE L2 3228 3313 0 1451 175 14 35 chr21 5776162 5776447 -29131123 - MLT2D LTR ERVL 0 414 136 1938 149 0 3 chr21 5776447 5776736 -29130834 + AluJb SINE Alu 1 288 -24 1027 139 6 30 chr21 5776759 5776925 -29130645 + AluSg/x SINE Alu 120 281 -29 1648 139 85 36 chr21 5776948 5777279 -29130291 - THE1C LTR MaLR -28 347 1 598 230 7 15 chr21 5777306 5777441 -29130129 - MLT2D LTR ERVL -270 144 11 1937 157 3 3 chr21 5777441 5777740 -29129830 + AluJb SINE Alu 1 299 -13 906 111 7 49 chr21 5779502 5779646 -29127924 + FLAM_C SINE Alu 6 143 0 859 158 0 0 chr21 5779652 5779772 -29127798 + AluJb SINE Alu 181 300 -12 2011 117 11 11 chr21 5779981 5780309 -29127261 - AluSx SINE Alu 0 328 1 2503 73 0 0 chr21 5780687 5780989 -29126581 + AluY SINE Alu 1 302 -9 2414 96 0 3 chr21 5782031 5782344 -29125226 - AluSx SINE Alu 0 312 1 32 43 0 0 chr21 5782372 5782418 -29125152 + AT_rich Low_complexity Low_complexity 1 46 0 2322 84 3 19 chr21 5782834 5783143 -29124427 + AluSg SINE Alu 1 304 -6 2167 122 3 0 chr21 5783185 5783487 -29124083 + AluSc SINE Alu 1 303 -6 195 42 0 0 chr21 5783536 5783560 -29124010 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2228 114 3 0 chr21 5783562 5783859 -29123711 - AluSx SINE Alu -14 298 1 237 182 0 0 chr21 5784053 5784097 -29123473 - L1MC4 LINE L1 -1338 6704 6661 1249 192 3 78 chr21 5784115 5784437 -29123133 - AluJo SINE Alu -9 303 6 2240 89 0 7 chr21 5784597 5784916 -29122654 - AluSg SINE Alu 0 319 3 627 212 79 18 chr21 5784917 5785082 -29122488 + MER5B DNA MER1_type 4 178 0 28 48 0 0 chr21 5785128 5785170 -29122400 + AT_rich Low_complexity Low_complexity 1 42 0 287 232 0 0 chr21 5785922 5785978 -29121592 - MIR3 SINE MIR -21 187 132 1345 152 134 32 chr21 5786198 5786362 -29121208 - AluJo SINE Alu 0 312 166 2021 155 0 0 chr21 5786362 5786665 -29120905 - AluJb SINE Alu -9 303 1 1345 152 134 32 chr21 5786665 5786783 -29120787 - AluJo SINE Alu -146 166 1 2454 43 17 0 chr21 5787039 5787338 -29120232 - AluY SINE Alu -2 309 6 1028 124 47 42 chr21 5787383 5787576 -29119994 + L1MB3 LINE L1 5975 6168 -15 225 0 0 0 chr21 5787576 5787601 -29119969 + (TG)n Simple_repeat Simple_repeat 2 26 0 1065 187 5 48 chr21 5787601 5787810 -29119760 - AluJo SINE Alu -21 291 92 2124 144 0 3 chr21 5787892 5788205 -29119365 - AluJo SINE Alu 0 312 1 2164 107 19 7 chr21 5788244 5788553 -29119017 - AluSp SINE Alu 0 313 1 2231 105 7 0 chr21 5788580 5788875 -29118695 + AluSx SINE Alu 1 297 -15 2173 102 0 11 chr21 5789122 5789436 -29118134 - AluSx SINE Alu 0 311 1 240 243 29 48 chr21 5790751 5790854 -29116716 + MIR SINE MIR 138 238 -24 2473 76 0 0 chr21 5791045 5791349 -29116221 + AluSg SINE Alu 1 304 -6 2426 165 24 7 chr21 5791617 5792036 -29115534 + MSTB LTR MaLR 1 426 0 509 240 139 51 chr21 5793138 5793503 -29114067 + HAL1b LINE L1 66 472 -876 1893 226 53 68 chr21 5793503 5793668 -29113902 + MLT1F LTR MaLR 3 169 -373 2210 84 27 10 chr21 5793668 5793965 -29113605 + AluSp SINE Alu 1 302 -11 1893 226 53 68 chr21 5793965 5794347 -29113223 + MLT1F LTR MaLR 169 542 0 509 240 139 51 chr21 5794347 5794390 -29113180 + HAL1b LINE L1 472 510 -838 238 214 0 0 chr21 5794398 5794440 -29113130 + HAL1b LINE L1 490 531 -817 2194 109 0 3 chr21 5794479 5794791 -29112779 + AluSq SINE Alu 2 312 0 734 250 17 6 chr21 5794814 5794990 -29112580 + AluJb SINE Alu 126 303 -9 558 245 65 82 chr21 5794991 5795407 -29112163 + HAL1b LINE L1 611 1019 -329 2528 63 0 0 chr21 5795418 5795717 -29111853 - AluY SINE Alu -12 299 1 2345 103 3 0 chr21 5795799 5796111 -29111459 - AluSp SINE Alu 0 313 1 1956 153 0 0 chr21 5796180 5796508 -29111062 - AluJo SINE Alu 0 330 3 551 297 57 19 chr21 5796512 5796721 -29110849 - L1ME LINE L1 -308 5813 5597 558 250 97 10 chr21 5796756 5796952 -29110618 - MIR SINE MIR -4 258 46 391 290 110 0 chr21 5796996 5797141 -29110429 + MIR SINE MIR 37 197 -65 2412 86 3 0 chr21 5797141 5797444 -29110126 + AluSg SINE Alu 2 305 -5 750 164 0 8 chr21 5798188 5798339 -29109231 + FLAM_C SINE Alu 1 133 0 1990 215 121 56 chr21 5798492 5798536 -29109034 - Zaphod DNA AcHobo -3196 827 787 2307 80 3 3 chr21 5798536 5798847 -29108723 - AluSp SINE Alu 0 311 1 1990 215 121 56 chr21 5798847 5799466 -29108104 - Zaphod DNA AcHobo -3236 787 103 2202 130 3 0 chr21 5799466 5799773 -29107797 - AluSx SINE Alu -4 308 1 1990 215 121 56 chr21 5799773 5799878 -29107692 - Zaphod DNA AcHobo -3920 103 6 2208 95 0 3 chr21 5800110 5800444 -29107126 + AluSg SINE Alu 1 333 0 1966 155 0 0 chr21 5801148 5801538 -29106032 - AluSx SINE Alu 0 390 1 1400 149 73 45 chr21 5801690 5801978 -29105592 + AluJo SINE Alu 17 312 0 237 33 0 0 chr21 5801978 5802008 -29105562 + (TA)n Simple_repeat Simple_repeat 2 31 0 24 0 0 0 chr21 5802060 5802084 -29105486 + AT_rich Low_complexity Low_complexity 1 24 0 500 281 90 4 chr21 5802097 5802364 -29105206 - L1ME4a LINE L1 -2 6119 5830 2442 83 7 0 chr21 5802373 5802675 -29104895 - AluSp SINE Alu -8 305 2 915 220 6 0 chr21 5802679 5802847 -29104723 - FAM SINE Alu -6 169 1 2457 62 0 0 chr21 5802856 5803188 -29104382 - AluY SINE Alu 0 311 1 2628 55 0 3 chr21 5803641 5803953 -29103617 - AluY SINE Alu 0 311 1 1492 108 0 19 chr21 5803999 5804211 -29103359 - AluSx SINE Alu -2 308 101 2157 106 27 0 chr21 5804211 5804504 -29103066 + AluSq SINE Alu 1 301 -12 2154 101 7 19 chr21 5804506 5804813 -29102757 + AluSx SINE Alu 1 303 -9 894 95 0 0 chr21 5804813 5804929 -29102641 - AluSx SINE Alu -197 116 1 330 229 72 0 chr21 5805152 5805235 -29102335 + L1ME3A LINE L1 6071 6159 -11 378 0 0 0 chr21 5805270 5805312 -29102258 + (TG)n Simple_repeat Simple_repeat 2 43 0 186 43 0 0 chr21 5805459 5805482 -29102088 + (CA)n Simple_repeat Simple_repeat 2 24 0 32 26 0 0 chr21 5806887 5806926 -29100644 + AT_rich Low_complexity Low_complexity 1 39 0 399 227 67 25 chr21 5807659 5807778 -29099792 + MER96B DNA MER1_type? 1 124 -293 212 57 0 29 chr21 5807911 5807946 -29099624 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2035 112 3 18 chr21 5807948 5808233 -29099337 - AluSx SINE Alu -31 281 1 3917 77 28 9 chr21 5808258 5808792 -29098778 - L1PA10 LINE L1 -9 6159 5616 2125 121 3 3 chr21 5808797 5809095 -29098475 - AluSg SINE Alu -12 298 1 202 250 138 0 chr21 5809297 5809377 -29098193 + MIR SINE MIR 171 261 -1 939 257 32 8 chr21 5809624 5809877 -29097693 + LTR16B LTR ERVL 204 462 -2 206 31 0 31 chr21 5810175 5810207 -29097363 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 862 144 0 27 chr21 5811057 5811203 -29096367 - FLAM_C SINE Alu -1 142 1 2446 154 31 19 chr21 5811626 5812047 -29095523 - MSTB LTR MaLR 0 426 1 1854 177 0 0 chr21 5812181 5812475 -29095095 + AluJb SINE Alu 1 294 -18 1003 304 77 17 chr21 5812629 5813031 -29094539 + LTR16C LTR ERVL 1 426 -65 1314 112 52 4 chr21 5814446 5814679 -29092891 - L1MA4 LINE L1 -14 6286 6043 6821 23 0 0 chr21 5815534 5816308 -29091262 - L1PA3 LINE L1 0 6155 5382 202 338 159 0 chr21 5816582 5816789 -29090781 + L2 LINE L2 2301 2540 -774 2137 105 42 0 chr21 5817599 5817885 -29089685 + AluSg SINE Alu 3 300 -10 634 192 0 25 chr21 5817892 5818012 -29089558 + FLAM_C SINE Alu 1 117 -16 392 258 40 71 chr21 5818061 5818259 -29089311 - L2 LINE L2 0 3313 3122 24 0 0 0 chr21 5818292 5818316 -29089254 + AT_rich Low_complexity Low_complexity 1 24 0 243 307 79 0 chr21 5818740 5818854 -29088716 - L2 LINE L2 -217 3055 2933 2409 93 3 0 chr21 5819927 5820229 -29087341 - AluSx SINE Alu -7 305 3 512 194 12 2 chr21 5820320 5820502 -29087068 - ORSL DNA AcHobo -61 214 1 2020 111 14 4 chr21 5820663 5820967 -29086603 + AluSq SINE Alu 1 307 0 1851 107 114 0 chr21 5821102 5821364 -29086206 + AluSx SINE Alu 1 292 -20 740 97 18 0 chr21 5821365 5821479 -29086091 + LTR9B LTR ERV1 445 560 -84 492 330 36 39 chr21 5821487 5821660 -29085910 + L1MEd LINE L1 466 639 -5480 2223 97 7 0 chr21 5821660 5821960 -29085610 + AluSq SINE Alu 1 302 -11 492 330 36 39 chr21 5821960 5822095 -29085475 + L1MEd LINE L1 639 773 -5346 670 174 0 90 chr21 5822095 5822171 -29085399 + FLAM_A SINE Alu 1 82 -229 2052 136 7 0 chr21 5822171 5822458 -29085112 - AluSp SINE Alu -24 289 1 670 174 0 90 chr21 5822458 5822512 -29085058 + FLAM_A SINE Alu 82 120 -191 198 0 0 0 chr21 5822512 5822534 -29085036 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 670 174 0 90 chr21 5822534 5822546 -29085024 + FLAM_A SINE Alu 120 131 -180 2256 128 0 3 chr21 5822548 5822861 -29084709 + AluSx SINE Alu 1 312 0 569 252 70 45 chr21 5822861 5823301 -29084269 + L1MEd LINE L1 755 1205 -4914 2174 118 10 0 chr21 5823366 5823662 -29083908 + AluSq SINE Alu 1 299 -14 4866 117 34 14 chr21 5823829 5824150 -29083420 + MER4E LTR ERV1 1 314 -465 2153 93 3 26 chr21 5824150 5824463 -29083107 + AluSc SINE Alu 1 306 -3 2335 63 0 0 chr21 5824463 5824748 -29082822 - AluSx SINE Alu -27 285 1 4866 117 34 14 chr21 5824748 5825188 -29082382 + MER4E LTR ERV1 313 778 -1 335 291 89 48 chr21 5825389 5825747 -29081823 + HAL1 LINE L1 1 373 -2134 2222 97 3 3 chr21 5825750 5826039 -29081531 + AluSc SINE Alu 1 289 -20 2317 85 24 0 chr21 5826150 5826445 -29081125 - AluSp SINE Alu -10 303 2 2126 104 20 3 chr21 5826532 5826829 -29080741 + AluSx SINE Alu 1 302 -10 2098 104 7 0 chr21 5827517 5827797 -29079773 + AluSx SINE Alu 1 282 -30 285 92 15 31 chr21 5828124 5828189 -29079381 + (TCC)n Simple_repeat Simple_repeat 3 66 0 218 189 0 19 chr21 5828247 5828300 -29079270 + CT-rich Low_complexity Low_complexity 3 54 0 1008 108 12 30 chr21 5828429 5828596 -29078974 - AluJo SINE Alu -117 195 32 1641 65 0 0 chr21 5828596 5828795 -29078775 + AluSg/x SINE Alu 72 270 -40 216 86 0 0 chr21 5829172 5829207 -29078363 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 2517 41 3 3 chr21 5829209 5829504 -29078066 - AluY SINE Alu -16 295 1 251 281 0 16 chr21 5829504 5829568 -29078002 + MER5B DNA MER1_type 114 176 -2 342 264 23 0 chr21 5829818 5829905 -29077665 - MIR SINE MIR -28 234 146 261 88 0 0 chr21 5830167 5830201 -29077369 - FRAM/FAM SINE Alu -120 55 22 2134 98 35 0 chr21 5832475 5832760 -29074810 - AluSp SINE Alu -17 296 2 1391 170 33 65 chr21 5832993 5833299 -29074271 + AluJb SINE Alu 1 296 -16 2370 60 20 3 chr21 5833367 5833666 -29073904 + AluY SINE Alu 1 304 -7 223 135 0 39 chr21 5833863 5833915 -29073655 + (TAG)n Simple_repeat Simple_repeat 1 50 0 517 272 19 25 chr21 5833926 5834088 -29073482 - MIR SINE MIR -18 244 84 1327 140 159 15 chr21 5834524 5834795 -29072775 + L1MA8 LINE L1 5982 6291 0 21 36 0 0 chr21 5836235 5836263 -29071307 + AT_rich Low_complexity Low_complexity 1 28 0 213 328 84 25 chr21 5837037 5837156 -29070414 + L2 LINE L2 3146 3271 -1 1655 92 0 0 chr21 5837598 5837804 -29069766 + AluSg/x SINE Alu 83 288 -22 267 103 0 0 chr21 5837814 5837853 -29069717 + (CA)n Simple_repeat Simple_repeat 2 40 0 206 295 21 74 chr21 5837863 5837958 -29069612 + L2 LINE L2 2236 2325 -989 219 219 41 68 chr21 5838221 5838294 -29069276 - MER5A DNA MER1_type -86 103 33 329 359 105 11 chr21 5838655 5838931 -29068639 - L2 LINE L2 -862 2452 2151 2222 99 0 0 chr21 5839156 5839460 -29068110 - AluSx SINE Alu 0 304 1 492 180 57 41 chr21 5839844 5839966 -29067604 - FLAM_A SINE Alu -1 141 18 2395 90 3 0 chr21 5839975 5840285 -29067285 - AluSp SINE Alu -2 311 1 243 361 34 38 chr21 5840285 5840548 -29067022 + L2 LINE L2 1754 2015 -1299 187 218 55 0 chr21 5841153 5841208 -29066362 - L2 LINE L2 -1637 1677 1620 44 20 0 0 chr21 5841496 5841547 -29066023 + AT_rich Low_complexity Low_complexity 1 51 0 2183 118 10 0 chr21 5841688 5841866 -29065704 - AluSx SINE Alu -4 308 124 330 26 0 0 chr21 5841866 5841905 -29065665 + (TG)n Simple_repeat Simple_repeat 2 40 0 2183 118 10 0 chr21 5841905 5842031 -29065539 - AluSx SINE Alu -188 124 1 2283 96 0 46 chr21 5842116 5842440 -29065130 + AluSx SINE Alu 1 309 -3 1824 125 26 72 chr21 5842450 5842754 -29064816 + AluJo SINE Alu 1 290 -22 1184 177 138 0 chr21 5843705 5843988 -29063582 - MER33 DNA MER1_type 0 324 3 22 0 0 0 chr21 5844318 5844340 -29063230 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr21 5844669 5844690 -29062880 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 689 125 48 0 chr21 5844981 5845085 -29062485 - HY1 scRNA scRNA -3 109 1 410 63 0 48 chr21 5845621 5845706 -29061864 - Alu SINE Alu 0 309 241 2354 97 0 3 chr21 5845899 5846210 -29061360 - AluY SINE Alu 0 311 2 2323 69 7 7 chr21 5846255 5846545 -29061025 - AluSp SINE Alu -23 290 1 2362 82 20 0 chr21 5846864 5847168 -29060402 - AluSg SINE Alu 0 310 1 2075 141 0 0 chr21 5847168 5847458 -29060112 - AluSx SINE Alu -21 291 1 1049 231 104 92 chr21 5847641 5847772 -29059798 - L1ME2 LINE L1 -48 6116 5988 2147 97 0 55 chr21 5847772 5848102 -29059468 - AluSx SINE Alu 0 312 1 1049 231 104 92 chr21 5848102 5848369 -29059201 - L1ME2 LINE L1 -176 5988 5726 2209 123 0 0 chr21 5848369 5848670 -29058900 + AluSx SINE Alu 1 301 -11 1049 231 104 92 chr21 5848670 5848855 -29058715 - L1ME2 LINE L1 -438 5726 5520 2277 113 0 3 chr21 5848855 5849165 -29058405 + AluSg SINE Alu 1 309 -1 1049 231 104 92 chr21 5849165 5849260 -29058310 - L1ME2 LINE L1 -644 5520 5428 506 226 113 0 chr21 5849617 5849732 -29057838 - FLAM_C SINE Alu -13 130 3 1322 179 48 55 chr21 5849762 5850053 -29057517 - AluJo SINE Alu -6 306 18 229 322 11 11 chr21 5850347 5850437 -29057133 + L2 LINE L2 1859 1948 -1366 450 260 98 54 chr21 5850570 5850774 -29056796 - MIR SINE MIR -2 260 48 507 274 6 32 chr21 5851385 5851542 -29056028 + MIR SINE MIR 110 262 0 537 129 0 0 chr21 5851845 5851938 -29055632 + (TA)n Simple_repeat Simple_repeat 1 93 0 2176 92 37 0 chr21 5851938 5852232 -29055338 - AluSg SINE Alu -5 305 1 2128 123 13 0 chr21 5852618 5852919 -29054651 - AluSx SINE Alu -7 305 1 1029 186 11 5 chr21 5852979 5853167 -29054403 - AluJb SINE Alu -26 286 98 807 146 0 42 chr21 5853184 5853328 -29054242 - AluJo SINE Alu -162 150 13 1828 168 0 3 chr21 5853562 5853859 -29053711 + AluJo SINE Alu 1 296 -16 182 226 16 48 chr21 5854518 5854580 -29052990 - L2 LINE L2 -188 3084 3025 2251 113 0 3 chr21 5854594 5854895 -29052675 - AluSx SINE Alu -12 300 1 232 287 75 43 chr21 5855551 5855645 -29051925 - L2 LINE L2 -5 3267 3171 2178 98 7 3 chr21 5855840 5856136 -29051434 - AluY SINE Alu -13 298 2 296 308 136 45 chr21 5856187 5856361 -29051209 - L2 LINE L2 -422 2892 2735 1742 156 3 41 chr21 5856361 5856675 -29050895 + AluJo SINE Alu 1 302 -10 296 308 136 45 chr21 5856675 5856831 -29050739 - L2 LINE L2 -579 2735 2532 1300 217 52 37 chr21 5857754 5858137 -29049433 - MLT1A2 LTR MaLR 0 390 11 21 36 0 0 chr21 5858159 5858187 -29049383 + AT_rich Low_complexity Low_complexity 1 28 0 258 177 25 51 chr21 5858456 5858535 -29049035 - L1MC/D LINE L1 -2052 5756 5680 28 0 0 0 chr21 5858739 5858767 -29048803 + AT_rich Low_complexity Low_complexity 1 28 0 2393 139 62 58 chr21 5858791 5859108 -29048462 - L1MC1 LINE L1 0 6333 6012 2387 57 0 20 chr21 5859108 5859405 -29048165 + AluY SINE Alu 1 291 -20 2393 139 62 58 chr21 5859405 5859589 -29047981 - L1MC1 LINE L1 -321 6012 5830 1339 180 105 24 chr21 5859556 5859889 -29047681 - L1MC4a LINE L1 -368 7440 7081 966 120 0 8 chr21 5861718 5861851 -29045719 + FLAM_C SINE Alu 1 132 -1 365 250 73 0 chr21 5862239 5862335 -29045235 - MLT1H LTR MaLR -15 534 432 363 230 93 22 chr21 5862430 5862569 -29045001 - MLT1H LTR MaLR -286 263 115 225 0 0 0 chr21 5862910 5862935 -29044635 + (T)n Simple_repeat Simple_repeat 1 25 0 1471 106 0 34 chr21 5863268 5863476 -29044094 - AluSg/x SINE Alu -18 292 92 2200 131 3 0 chr21 5863610 5863916 -29043654 - AluSq SINE Alu -6 307 1 2387 84 202 6 chr21 5864175 5864532 -29043038 - MSTA LTR MaLR -1 427 1 21 0 0 0 chr21 5865588 5865609 -29041961 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 5865889 5865923 -29041647 + AT_rich Low_complexity Low_complexity 1 34 0 275 154 220 22 chr21 5867037 5867128 -29040442 - MIR SINE MIR -77 131 23 213 233 68 117 chr21 5867088 5867251 -29040319 + MIR SINE MIR 50 204 -58 2192 102 10 0 chr21 5867912 5868205 -29039365 + AluSg SINE Alu 1 296 -14 1808 141 25 0 chr21 5868955 5869258 -29038312 + AluSx SINE Alu 1 310 0 31 0 0 0 chr21 5870739 5870770 -29036800 + AT_rich Low_complexity Low_complexity 1 31 0 2022 123 0 0 chr21 5870770 5871039 -29036531 - AluSx SINE Alu -22 290 22 2159 118 13 0 chr21 5871449 5871754 -29035816 - AluY SINE Alu -2 309 1 183 309 86 0 chr21 5872855 5872936 -29034634 - L2 LINE L2 -357 2915 2828 1202 196 51 18 chr21 5873206 5873481 -29034089 - L1MD3 LINE L1 -11 7984 7701 962 205 65 5 chr21 5873479 5873694 -29033876 - L1MC4a LINE L1 -462 7346 7119 342 211 83 42 chr21 5874742 5874881 -29032689 + L1ME2 LINE L1 5561 5721 -462 365 261 43 9 chr21 5874970 5875085 -29032485 + LTR65 LTR ERV1 1 119 -550 346 174 93 23 chr21 5875399 5875485 -29032085 + L1ME2 LINE L1 5710 5801 -365 591 208 84 59 chr21 5875493 5875695 -29031875 + L1ME2 LINE L1 5833 6039 -125 25 31 0 0 chr21 5875919 5875951 -29031619 + AT_rich Low_complexity Low_complexity 1 32 0 1506 168 4 19 chr21 5875978 5876246 -29031324 - AluJo SINE Alu -25 287 24 1530 168 42 42 chr21 5877041 5877326 -29030244 - AluJb SINE Alu -17 285 1 1756 153 29 19 chr21 5877498 5877806 -29029764 - AluJb SINE Alu 0 312 2 1644 144 47 7 chr21 5879862 5880140 -29027430 - Tigger1 DNA MER2_type -52 2366 2078 1513 156 0 8 chr21 5880155 5880392 -29027178 - AluJb SINE Alu -10 302 68 3876 145 14 6 chr21 5880392 5881025 -29026545 - Tigger1 DNA MER2_type -1314 1104 467 446 197 0 0 chr21 5881032 5881108 -29026462 + FRAM SINE Alu 55 130 -46 2347 153 38 26 chr21 5881130 5881497 -29026073 - Tigger1 DNA MER2_type -1935 483 109 2541 63 0 0 chr21 5881497 5881799 -29025771 + AluY SINE Alu 1 302 -9 2347 153 38 26 chr21 5881799 5881855 -29025715 - Tigger1 DNA MER2_type -2309 109 55 1556 168 78 48 chr21 5881969 5882048 -29025522 + MER2 DNA MER2_type 2 77 -267 809 97 89 32 chr21 5882048 5882172 -29025398 + FLAM_C SINE Alu 1 131 -2 1556 168 78 48 chr21 5882172 5882425 -29025145 + MER2 DNA MER2_type 77 344 0 28 71 0 0 chr21 5882517 5882573 -29024997 + AT_rich Low_complexity Low_complexity 1 56 0 2190 110 0 0 chr21 5882566 5882856 -29024714 - AluSx SINE Alu -6 306 17 288 0 0 0 chr21 5883120 5883152 -29024418 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 0 0 0 chr21 5883661 5883682 -29023888 + AT_rich Low_complexity Low_complexity 1 21 0 207 100 0 0 chr21 5884784 5884814 -29022756 + (A)n Simple_repeat Simple_repeat 1 30 0 32 57 0 0 chr21 5885527 5885580 -29021990 + AT_rich Low_complexity Low_complexity 1 53 0 2529 60 0 0 chr21 5885963 5886265 -29021305 - AluY SINE Alu -9 302 1 840 145 15 0 chr21 5886397 5886528 -29021042 - FLAM_C SINE Alu 0 133 1 188 67 33 0 chr21 5887197 5887227 -29020343 + (TA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr21 5887527 5887557 -29020013 + AT_rich Low_complexity Low_complexity 1 30 0 1147 225 7 33 chr21 5888262 5888533 -29019037 - MLT1A1 LTR MaLR -75 290 27 1126 133 8 112 chr21 5888717 5888958 -29018612 - MER20 DNA MER1_type -1 218 3 252 192 141 13 chr21 5889051 5889129 -29018441 + MIR SINE MIR 98 185 -77 2102 102 3 36 chr21 5889917 5890221 -29017349 + AluSx SINE Alu 1 294 -18 1030 192 81 119 chr21 5890818 5891203 -29016367 - MLT1B LTR MaLR -20 370 1 2119 107 21 0 chr21 5891464 5891754 -29015816 + AluSx SINE Alu 1 296 -16 267 88 0 0 chr21 5891848 5891882 -29015688 - U2 snRNA snRNA -154 34 1 485 358 78 12 chr21 5892277 5892612 -29014958 - L2 LINE L2 -862 2452 2096 486 269 69 6 chr21 5892585 5892745 -29014825 - L2 LINE L2 -935 2379 2210 504 48 0 0 chr21 5892826 5892889 -29014681 + (CATA)n Simple_repeat Simple_repeat 2 64 0 1681 146 18 4 chr21 5893008 5893315 -29014255 - AluJo SINE Alu 0 314 4 2193 76 0 11 chr21 5893330 5893605 -29013965 - AluY SINE Alu -14 297 26 2487 77 0 0 chr21 5893643 5893942 -29013628 + AluSx SINE Alu 1 299 -13 574 269 86 51 chr21 5894099 5894333 -29013237 + MIR SINE MIR 19 260 -2 312 281 62 23 chr21 5894389 5894517 -29013053 - MER94 DNA DNA 0 134 2 617 149 37 0 chr21 5894636 5894743 -29012827 + HY1 scRNA scRNA 2 112 0 427 103 0 0 chr21 5894944 5895002 -29012568 + Alu SINE Alu 238 295 -17 252 0 0 0 chr21 5895450 5895478 -29012092 + (T)n Simple_repeat Simple_repeat 1 28 0 3021 147 60 30 chr21 5895583 5896182 -29011388 - L1MB1 LINE L1 -109 6059 5443 192 191 95 0 chr21 5896212 5896275 -29011295 - L2 LINE L2 -1122 2192 2124 1868 105 54 11 chr21 5896392 5896669 -29010901 + AluJb SINE Alu 1 289 -23 2345 98 0 0 chr21 5897114 5897421 -29010149 - AluY SINE Alu -4 307 1 773 194 8 0 chr21 5897830 5897959 -29009611 - FLAM_C SINE Alu -13 130 1 26 0 0 0 chr21 5898010 5898036 -29009534 + AT_rich Low_complexity Low_complexity 1 26 0 1650 158 35 3 chr21 5898174 5898458 -29009112 + AluJb SINE Alu 1 293 -19 1783 177 0 0 chr21 5898596 5898878 -29008692 - AluJb SINE Alu -20 292 11 520 311 6 0 chr21 5898985 5899162 -29008408 - L1MC/D LINE L1 -1999 5809 5632 1785 128 13 27 chr21 5899401 5899699 -29007871 + AluJo SINE Alu 3 296 -16 284 0 0 27 chr21 5899758 5899795 -29007775 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 951 79 0 29 chr21 5899796 5899935 -29007635 - AluSq SINE Alu -32 281 147 1049 104 0 7 chr21 5900003 5900147 -29007423 - AluSq SINE Alu -167 146 4 21 0 0 0 chr21 5900157 5900178 -29007392 + AT_rich Low_complexity Low_complexity 1 21 0 263 180 180 0 chr21 5901971 5902032 -29005538 + MIR SINE MIR 3 74 -188 285 263 0 0 chr21 5902070 5902146 -29005424 + MIR SINE MIR 185 260 -2 2224 84 24 3 chr21 5902387 5902685 -29004885 + AluSg SINE Alu 1 304 -6 2358 62 0 7 chr21 5903365 5903653 -29003917 - AluSc SINE Alu -21 288 3 341 115 51 0 chr21 5904195 5904273 -29003297 + (TA)n Simple_repeat Simple_repeat 1 82 0 736 185 0 0 chr21 5904307 5904426 -29003144 - FLAM_C SINE Alu -12 131 13 8807 31 7 1 chr21 5904576 5906411 -29001159 - L1PA4 LINE L1 -1 6154 4315 400 257 32 73 chr21 5907441 5907659 -28999911 - L1ME LINE L1 -302 5819 5611 26 0 0 0 chr21 5907896 5907922 -28999648 + AT_rich Low_complexity Low_complexity 1 26 0 303 317 113 7 chr21 5908994 5909136 -28998434 + MIR SINE MIR 24 180 -82 25 0 0 0 chr21 5909159 5909184 -28998386 + AT_rich Low_complexity Low_complexity 1 25 0 814 124 8 0 chr21 5910066 5910187 -28997383 + MER2 DNA MER2_type 2 123 -221 26 30 0 0 chr21 5910218 5910251 -28997319 + AT_rich Low_complexity Low_complexity 1 33 0 253 238 70 128 chr21 5912481 5912536 -28995034 + MER5A DNA MER1_type 1 58 -125 2312 83 13 0 chr21 5912536 5912850 -28994720 + L1PA14 LINE L1 5844 6161 0 253 238 70 128 chr21 5912850 5912966 -28994604 + MER5A DNA MER1_type 58 167 -16 22 0 0 0 chr21 5913138 5913160 -28994410 + AT_rich Low_complexity Low_complexity 1 22 0 868 245 82 49 chr21 5913352 5913865 -28993705 - L1MC4a LINE L1 -456 5714 5396 1949 219 52 41 chr21 5913946 5914582 -28992988 - L1MC4a LINE L1 -818 5328 4686 376 280 16 24 chr21 5914584 5914709 -28992861 - L1MC4a LINE L1 -1504 4642 4519 276 30 0 0 chr21 5915464 5915497 -28992073 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 30 0 0 0 chr21 5916029 5916059 -28991511 + AT_rich Low_complexity Low_complexity 1 30 0 1662 170 7 17 chr21 5917019 5917308 -28990262 - AluJb SINE Alu -17 295 10 2355 89 0 10 chr21 5917313 5917617 -28989953 - AluSx SINE Alu -11 301 1 849 173 0 0 chr21 5918376 5918509 -28989061 + AluJo SINE Alu 1 133 -169 2505 57 0 3 chr21 5918719 5919015 -28988555 + AluSg SINE Alu 1 295 -15 424 248 14 71 chr21 5919021 5919162 -28988408 + MIR3 SINE MIR 28 160 -48 807 237 6 6 chr21 5919214 5919391 -28988179 + AluJo SINE Alu 136 312 0 284 309 49 0 chr21 5921541 5921664 -28985906 + L2 LINE L2 2932 3060 -212 2089 96 10 14 chr21 5921999 5922292 -28985278 + AluSq SINE Alu 1 292 -21 186 344 104 21 chr21 5923661 5923757 -28983813 + MIR SINE MIR 38 141 -67 768 285 50 0 chr21 5923937 5924158 -28983412 - MIR SINE MIR 0 262 31 505 283 66 0 chr21 5924593 5924791 -28982779 - L1ME LINE L1 -348 5773 5563 1537 186 13 36 chr21 5925922 5926223 -28981347 + AluJo SINE Alu 1 294 -18 1425 167 51 19 chr21 5927404 5927715 -28979855 + L1MB8 LINE L1 5546 5866 -312 2335 167 25 15 chr21 5927715 5928179 -28979391 + L1MB8 LINE L1 5684 6162 -16 301 239 124 90 chr21 5930346 5930580 -28976990 + L1M2 LINE L1 780 1021 -5828 21 0 0 0 chr21 5931685 5931706 -28975864 + AT_rich Low_complexity Low_complexity 1 21 0 1799 185 3 0 chr21 5932299 5932596 -28974974 + AluJb SINE Alu 1 298 -14 1860 162 53 34 chr21 5932843 5933201 -28974369 + MLT1A1 LTR MaLR 1 365 0 805 104 27 15 chr21 5933226 5933442 -28974128 - Tigger7 DNA MER2_type 0 2487 2232 2220 110 3 10 chr21 5933806 5934114 -28973456 + AluSx SINE Alu 1 306 -6 1972 86 0 0 chr21 5934173 5934418 -28973152 - AluY SINE Alu -12 299 55 213 39 0 0 chr21 5935135 5935161 -28972409 + (TTG)n Simple_repeat Simple_repeat 2 27 0 291 0 0 0 chr21 5935238 5935269 -28972301 - U6 snRNA snRNA -76 31 1 3732 127 30 2 chr21 5935329 5935905 -28971665 - Tigger1 DNA MER2_type -2 2416 1825 678 179 119 8 chr21 5935906 5936040 -28971530 + FRAM SINE Alu 1 147 -29 4954 119 3 12 chr21 5936040 5936362 -28971208 - Tigger1 DNA MER2_type -624 1794 1470 2171 123 3 19 chr21 5936362 5936672 -28970898 - AluSg SINE Alu -5 305 1 4954 119 3 12 chr21 5936672 5937074 -28970496 - Tigger1 DNA MER2_type -948 1470 1077 539 237 0 0 chr21 5937076 5937169 -28970401 + AluS SINE Alu 2 94 -219 1277 127 0 135 chr21 5937181 5937448 -28970122 + AluSg SINE Alu 64 294 -16 6903 131 20 8 chr21 5937451 5938524 -28969046 - Tigger1 DNA MER2_type -1330 1088 3 247 170 43 0 chr21 5938586 5938633 -28968937 - MLT2C2 LTR ERVL -2 513 465 23 0 0 0 chr21 5938634 5938657 -28968913 + AT_rich Low_complexity Low_complexity 1 23 0 1682 185 177 0 chr21 5938673 5939024 -28968546 - MLT2C2 LTR ERVL -51 413 1 1323 211 56 38 chr21 5939356 5939697 -28967873 + MLT1A1 LTR MaLR 19 365 0 256 108 0 0 chr21 5940835 5940872 -28966698 - AluJb SINE Alu -9 293 257 1333 151 0 10 chr21 5940873 5941079 -28966491 - AluJb SINE Alu -108 204 1 1324 287 57 55 chr21 5941314 5942053 -28965517 + L2 LINE L2 2153 2892 -422 1664 211 64 103 chr21 5942073 5942600 -28964970 - MLT1E2 LTR MaLR -1 625 1 532 257 129 40 chr21 5942702 5942974 -28964596 + L2 LINE L2 3010 3305 -8 406 289 120 82 chr21 5943078 5943171 -28964399 - L3 LINE CR1 -1092 485 397 951 113 60 6 chr21 5943171 5943339 -28964231 + L1MA4 LINE L1 6109 6285 -15 406 289 120 82 chr21 5943339 5943587 -28963983 - L3 LINE CR1 -1180 397 131 21 0 0 0 chr21 5944100 5944121 -28963449 + AT_rich Low_complexity Low_complexity 1 21 0 195 219 0 0 chr21 5944598 5944639 -28962931 + L2 LINE L2 3230 3270 -2 384 349 24 30 chr21 5944681 5944850 -28962720 - MIR3 SINE MIR -25 183 16 2271 105 3 0 chr21 5944912 5945208 -28962362 + AluSp SINE Alu 1 297 -16 566 143 133 0 chr21 5945365 5945463 -28962107 + AluJ SINE Alu 22 132 -180 391 324 0 29 chr21 5945946 5946037 -28961533 - L2 LINE L2 -5 3267 3180 1681 229 51 77 chr21 5946037 5946341 -28961229 - MLT2B3 LTR ERVL 0 554 270 2476 67 0 7 chr21 5946341 5946640 -28960930 - AluSx SINE Alu -15 297 1 1681 229 51 77 chr21 5946640 5946904 -28960666 - MLT2B3 LTR ERVL -284 270 1 391 324 0 29 chr21 5946904 5946948 -28960622 - L2 LINE L2 -92 3180 3136 1869 130 0 34 chr21 5946961 5947253 -28960317 + AluSx SINE Alu 27 308 -4 943 192 6 17 chr21 5947253 5947448 -28960122 + AluJ SINE Alu 134 312 0 754 164 9 0 chr21 5947529 5947639 -28959931 + FLAM_A SINE Alu 1 111 -31 300 111 0 0 chr21 5947644 5947689 -28959881 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 203 200 0 0 chr21 5948471 5948506 -28959064 + T-rich Low_complexity Low_complexity 1 35 0 1461 160 4 4 chr21 5949712 5949949 -28957621 - AluJb SINE Alu -75 237 1 2388 66 7 7 chr21 5950423 5950724 -28956846 + AluY SINE Alu 1 301 -10 680 229 15 0 chr21 5950848 5950979 -28956591 + MER39 LTR ERV1 1 133 -574 2827 157 90 37 chr21 5950952 5951120 -28956450 + LTR48 LTR ERV1 132 290 -497 1769 139 45 7 chr21 5951120 5951408 -28956162 + AluJo SINE Alu 1 299 -13 2827 157 90 37 chr21 5951408 5951862 -28955708 + LTR48 LTR ERV1 290 787 0 924 188 0 24 chr21 5952577 5952747 -28954823 - FAM SINE Alu -9 40 1 289 341 23 31 chr21 5952975 5953104 -28954466 - MIR3 SINE MIR -51 157 30 24 0 0 0 chr21 5953403 5953427 -28954143 + AT_rich Low_complexity Low_complexity 1 24 0 2513 222 24 16 chr21 5953561 5954186 -28953384 - L1M4 LINE L1 -1429 4717 4088 25 0 0 0 chr21 5954194 5954219 -28953351 + AT_rich Low_complexity Low_complexity 1 25 0 541 231 48 21 chr21 5954669 5954834 -28952736 - MLT1G3 LTR MaLR -180 410 177 1937 100 32 55 chr21 5954955 5955264 -28952306 - AluSx SINE Alu -10 302 1 455 117 0 13 chr21 5955385 5955462 -28952108 + (TTCC)n Simple_repeat Simple_repeat 1 76 0 1786 138 6 55 chr21 5955554 5955881 -28951689 + AluSx SINE Alu 1 311 -1 305 356 43 5 chr21 5955928 5956116 -28951454 + L2 LINE L2 2824 3018 -254 727 212 15 0 chr21 5956842 5956974 -28950596 + AluJo SINE Alu 1 134 -178 2831 119 46 5 chr21 5957262 5957673 -28949897 - MSTA LTR MaLR 0 428 1 10154 170 16 4 chr21 5957676 5959304 -28948266 - MSTA-int LTR MaLR -4 1647 1 2599 143 44 7 chr21 5959304 5959717 -28947853 - MSTA LTR MaLR 0 428 1 238 309 104 48 chr21 5959896 5960147 -28947423 - L2 LINE L2 -834 2480 2204 1442 226 40 0 chr21 5960147 5960322 -28947248 - AluJb SINE Alu -3 309 116 300 27 0 0 chr21 5960322 5960359 -28947211 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 1442 226 40 0 chr21 5960359 5960480 -28947090 - AluJb SINE Alu -196 116 1 238 309 104 48 chr21 5960480 5960564 -28947006 - L2 LINE L2 -1110 2204 2126 324 276 20 20 chr21 5960623 5960721 -28946849 - MER5A DNA MER1_type -76 113 16 207 139 0 0 chr21 5960849 5960885 -28946685 + (GA)n Simple_repeat Simple_repeat 2 37 0 246 358 58 23 chr21 5961314 5961574 -28945996 - L2 LINE L2 -1930 1384 1116 437 286 56 25 chr21 5961833 5961994 -28945576 + MER5B DNA MER1_type 12 177 -1 2182 162 20 0 chr21 5962103 5962449 -28945121 - MLT1A1 LTR MaLR -3 362 10 2248 144 38 71 chr21 5962630 5963052 -28944518 + MSTB LTR MaLR 19 426 0 300 258 62 107 chr21 5963873 5964164 -28943406 - L1ME4a LINE L1 -157 5964 5687 597 293 80 20 chr21 5964194 5964494 -28943076 - L1ME4a LINE L1 -2186 5622 5305 24 0 0 0 chr21 5964689 5964713 -28942857 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr21 5964723 5964747 -28942823 + AT_rich Low_complexity Low_complexity 1 24 0 571 172 104 8 chr21 5965132 5965266 -28942304 + ORSL DNA AcHobo 30 176 -99 1012 175 208 29 chr21 5965397 5965637 -28941933 - AluYa5 SINE Alu -18 283 1 262 283 115 32 chr21 5965943 5966068 -28941502 - MLT1H1 LTR MaLR 0 555 415 302 362 36 0 chr21 5966077 5966215 -28941355 + L2 LINE L2 1860 2002 -1312 1832 251 22 28 chr21 5966311 5966810 -28940760 - MLT1D LTR MaLR 0 505 10 901 154 64 0 chr21 5967120 5967276 -28940294 + FAM SINE Alu 1 41 -8 303 206 0 69 chr21 5968487 5968589 -28938981 + (TATATG)n Simple_repeat Simple_repeat 4 98 0 1459 149 48 10 chr21 5968591 5968880 -28938690 - L1MA7 LINE L1 -5 6286 5987 290 324 44 15 chr21 5969642 5969778 -28937792 + MIR SINE MIR 110 249 -13 22 0 0 0 chr21 5969878 5969900 -28937670 + AT_rich Low_complexity Low_complexity 1 22 0 4943 62 23 0 chr21 5970530 5971131 -28936439 + L1PA7 LINE L1 5534 6148 -6 2409 80 6 10 chr21 5971404 5971718 -28935852 - AluSp SINE Alu 0 313 1 528 232 76 45 chr21 5971753 5971977 -28935593 - HAL1 LINE L1 -1 2506 2276 647 276 57 50 chr21 5972096 5972375 -28935195 - HAL1 LINE L1 -271 2236 1956 2600 239 75 60 chr21 5972419 5973463 -28934107 - HAL1 LINE L1 -629 1878 820 4126 162 27 7 chr21 5973543 5974240 -28933330 - MER50 LTR ERV1 -23 711 1 1014 186 5 29 chr21 5974240 5974442 -28933128 + MER3 DNA MER1_type 13 209 0 407 282 102 93 chr21 5974708 5974875 -28932695 - HAL1 LINE L1 -2171 336 172 2304 85 14 0 chr21 5974875 5975168 -28932402 - AluSc SINE Alu -12 297 1 407 282 102 93 chr21 5975168 5975182 -28932388 - HAL1 LINE L1 -2335 172 160 1609 147 15 33 chr21 5975182 5975454 -28932116 - AluJo SINE Alu -45 267 1 407 282 102 93 chr21 5975454 5975594 -28931976 - HAL1 LINE L1 -2347 160 11 1167 196 31 24 chr21 5977045 5977300 -28930270 - LTR48B LTR ERV1 -7 637 381 1249 192 74 24 chr21 5977375 5977712 -28929858 - LTR48 LTR ERV1 -376 268 1 408 333 94 9 chr21 5977749 5977962 -28929608 - MIR SINE MIR -12 250 20 2184 95 0 0 chr21 5979244 5979545 -28928025 + AluSc SINE Alu 6 306 0 2034 141 3 3 chr21 5979567 5979873 -28927697 + AluSq SINE Alu 1 306 -7 2727 23 0 0 chr21 5980349 5980652 -28926918 + AluY SINE Alu 1 303 -8 590 202 9 0 chr21 5980936 5981045 -28926525 + MER63 DNA MER1_type 949 1058 -3 417 298 19 0 chr21 5981823 5981927 -28925643 + L2 LINE L2 3166 3271 -1 3406 154 14 30 chr21 5981983 5982651 -28924919 + L1MC1 LINE L1 5173 5828 -505 1284 179 49 0 chr21 5982651 5982875 -28924695 + AluJb SINE Alu 1 235 -77 1588 145 74 27 chr21 5982875 5983171 -28924399 + L1MC1 LINE L1 5841 6150 -183 712 188 56 7 chr21 5983171 5983315 -28924255 + LTR54B LTR ERV1 1 151 -347 1481 136 4 0 chr21 5983365 5983593 -28923977 + LTR54 LTR ERV1 282 510 0 697 186 5 62 chr21 5983593 5983674 -28923896 + L1MC1 LINE L1 6150 6234 -99 192 40 0 0 chr21 5983674 5983699 -28923871 + (TG)n Simple_repeat Simple_repeat 2 26 0 697 186 5 62 chr21 5983699 5983798 -28923772 + L1MC1 LINE L1 6234 6321 -12 2272 107 0 0 chr21 5983798 5984097 -28923473 + AluY SINE Alu 1 299 -12 697 186 5 62 chr21 5984097 5984109 -28923461 + L1MC1 LINE L1 6321 6332 -1 1525 235 43 3 chr21 5984528 5984883 -28922687 - LTR51 LTR ERV1 -96 626 241 1848 137 68 30 chr21 5985014 5985351 -28922219 - MER61C LTR ERV1 0 434 85 253 293 122 0 chr21 5985399 5985481 -28922089 - MER101B LTR ERV1 -469 101 10 2116 96 48 0 chr21 5985954 5986246 -28921324 - AluSq SINE Alu -7 306 1 837 128 0 38 chr21 5986958 5987091 -28920479 + FLAM_C SINE Alu 1 128 -15 2102 108 17 3 chr21 5987404 5987692 -28919878 - AluSg SINE Alu -18 292 1 484 281 65 7 chr21 5987696 5987835 -28919735 - MIR SINE MIR -114 148 2 198 0 0 0 chr21 5988171 5988193 -28919377 + (TC)n Simple_repeat Simple_repeat 1 22 0 1254 156 14 18 chr21 5988262 5988480 -28919090 + MLT1B LTR MaLR 1 217 -173 889 175 75 18 chr21 5988494 5988719 -28918851 + MER39 LTR ERV1 1 281 -426 1990 130 45 60 chr21 5988699 5988938 -28918632 + MER39 LTR ERV1 175 416 -291 2278 128 0 0 chr21 5988938 5989250 -28918320 - AluSx SINE Alu 0 312 1 1990 130 45 60 chr21 5989250 5989406 -28918164 + MER39 LTR ERV1 416 707 0 766 206 31 12 chr21 5989406 5989566 -28918004 + MLT1B LTR MaLR 228 390 0 1831 151 34 7 chr21 5990174 5990465 -28917105 + AluJo SINE Alu 1 299 -13 249 139 0 0 chr21 5991543 5991586 -28915984 + (A)n Simple_repeat Simple_repeat 1 43 0 465 66 40 26 chr21 5992775 5992851 -28914719 + MADE1 DNA Mariner 2 78 -2 5175 72 25 15 chr21 5993043 5993465 -28914105 + PABL_A LTR ERV1 1 433 -227 2270 108 3 13 chr21 5993465 5993780 -28913790 + AluSx SINE Alu 1 312 0 5175 72 25 15 chr21 5993780 5994011 -28913559 + PABL_A LTR ERV1 433 660 0 4120 187 39 53 chr21 5994387 5995354 -28912216 - LTR13 LTR ERVK 0 954 1 2305 83 0 30 chr21 5995423 5995724 -28911846 + AluY SINE Alu 1 292 -19 25 0 0 0 chr21 5995742 5995767 -28911803 + AT_rich Low_complexity Low_complexity 1 25 0 3411 123 86 2 chr21 5995940 5996426 -28911144 + MER1A DNA MER1_type 1 527 0 2338 82 3 0 chr21 5997599 5997892 -28909678 + AluSg SINE Alu 5 298 -12 921 217 21 77 chr21 5998137 5998174 -28909396 - MER58A DNA MER1_type -2196 224 187 2478 60 0 3 chr21 5998174 5998473 -28909097 + AluY SINE Alu 1 298 -13 921 217 21 77 chr21 5998473 5998670 -28908900 - MER58A DNA MER1_type -2233 187 3 3423 110 41 20 chr21 5999369 5999969 -28907601 - MER4B LTR ERV1 0 779 2 260 266 81 58 chr21 5999985 6000084 -28907486 + MER5B DNA MER1_type 61 161 -28 1484 142 41 90 chr21 6000172 6000537 -28907033 - LTR49 LTR ERV1 0 595 249 532 123 0 0 chr21 6000534 6000615 -28906955 - LTR49 LTR ERV1 -266 329 249 1891 98 115 0 chr21 6000612 6000907 -28906663 - LTR49 LTR ERV1 -266 329 1 26 64 0 0 chr21 6001253 6001300 -28906270 + AT_rich Low_complexity Low_complexity 1 47 0 14968 191 23 14 chr21 6001301 6001658 -28905912 - L1PB1 LINE L1 -1 6866 6514 441 0 0 0 chr21 6001658 6001707 -28905863 + (TG)n Simple_repeat Simple_repeat 2 50 0 14968 191 23 14 chr21 6001707 6003117 -28904453 - L1PB1 LINE L1 -353 6514 5118 243 0 0 0 chr21 6003117 6003144 -28904426 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 14968 191 23 14 chr21 6003144 6006902 -28900668 - L1PB1 LINE L1 -1749 5118 1094 1919 207 12 5 chr21 6006906 6007322 -28900248 - L1PB1 LINE L1 -5817 1046 628 968 282 65 16 chr21 6007365 6007794 -28899776 - L1PB1 LINE L1 -6313 550 101 4140 136 30 19 chr21 6008077 6008704 -28898866 + MER41B LTR ERV1 1 634 -1 2488 40 7 3 chr21 6009194 6009492 -28898078 - AluY SINE Alu -12 299 1 2266 118 0 0 chr21 6010330 6010636 -28896934 - AluSg1 SINE Alu -3 306 1 2516 51 3 16 chr21 6011105 6011417 -28896153 - AluY SINE Alu -3 308 1 1925 129 0 41 chr21 6011933 6012054 -28895516 - AluSx SINE Alu 0 302 178 7681 81 2 1 chr21 6012054 6013021 -28894549 - LTR5 LTR ERVK -1 968 1 1925 129 0 41 chr21 6013021 6013213 -28894357 - AluSx SINE Alu -124 178 1 269 276 95 59 chr21 6013268 6013453 -28894117 + MER5A DNA MER1_type 2 178 0 384 22 0 0 chr21 6013550 6013595 -28893975 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 625 233 68 34 chr21 6014223 6014429 -28893141 - LTR7 LTR ERV1 0 450 238 625 130 0 0 chr21 6014939 6015031 -28892539 - LTR7 LTR ERV1 -358 92 1 285 286 61 20 chr21 6015130 6015228 -28892342 - L2 LINE L2 -84 3229 3128 501 320 60 39 chr21 6015231 6015615 -28891955 - L2 LINE L2 -118 3195 2804 2151 112 33 3 chr21 6015679 6015983 -28891587 - AluSp SINE Alu 0 313 1 2304 120 0 0 chr21 6016123 6016432 -28891138 + AluSg SINE Alu 1 309 -1 2060 133 0 0 chr21 6016587 6016872 -28890698 - AluSx SINE Alu -27 285 1 1762 168 0 30 chr21 6016880 6017184 -28890386 - AluJb SINE Alu -17 295 1 434 327 76 18 chr21 6017185 6017408 -28890162 - L2 LINE L2 -1000 2314 2079 1422 186 29 26 chr21 6017438 6017744 -28889826 - MER21B LTR ERV1 0 863 557 2256 96 3 0 chr21 6018173 6018466 -28889104 - AluSc SINE Alu -12 297 4 4986 114 20 44 chr21 6018697 6019485 -28888085 - MER4E LTR ERV1 -10 769 1 311 151 329 0 chr21 6019502 6019575 -28887995 - MER21B LTR ERV1 -308 555 459 238 61 0 0 chr21 6019573 6019606 -28887964 + Tigger1 DNA MER2_type 1444 1476 -942 2069 111 7 14 chr21 6019613 6019901 -28887669 + AluSx SINE Alu 6 291 -21 2681 183 49 0 chr21 6019908 6020361 -28887209 - MER21B LTR ERV1 -388 475 1 235 303 101 27 chr21 6020374 6020562 -28887008 - L2 LINE L2 -1369 1945 1744 212 146 0 49 chr21 6020859 6020900 -28886670 + (TATG)n Simple_repeat Simple_repeat 1 39 0 2504 132 22 79 chr21 6020900 6021354 -28886216 + MSTA LTR MaLR 1 428 0 392 0 21 0 chr21 6021357 6021405 -28886165 + (TG)n Simple_repeat Simple_repeat 2 50 0 2436 74 3 0 chr21 6021411 6021707 -28885863 - AluSp SINE Alu -15 298 2 277 100 20 0 chr21 6021819 6021869 -28885701 - L1MB5 LINE L1 -25 6149 6099 962 121 5 27 chr21 6021869 6022060 -28885510 + MER4B LTR ERV1 1 225 -385 2132 240 32 11 chr21 6022072 6022610 -28884960 + L1PBa LINE L1 6 554 -6309 2342 170 14 21 chr21 6022640 6023075 -28884495 + L1PBa LINE L1 617 1048 -5815 8402 138 33 6 chr21 6023076 6024576 -28882994 + L1PBa LINE L1 1093 2782 -4081 5305 186 43 5 chr21 6024581 6025685 -28881885 + L1 LINE L1 2826 3972 -2890 1019 94 7 7 chr21 6025690 6025828 -28881742 - L1PA11 LINE L1 -2 6172 6035 862 46 55 0 chr21 6025828 6025937 -28881633 - MER85 DNA T2_type -24 115 1 1077 79 6 18 chr21 6025937 6026101 -28881469 - L1PA11 LINE L1 -121 6053 5892 2032 128 18 98 chr21 6026104 6026503 -28881067 + MER4B LTR ERV1 188 554 -56 627 83 73 28 chr21 6026483 6026592 -28880978 + MER4D LTR ERV1 759 872 0 1069 154 0 18 chr21 6026651 6026820 -28880750 + FRAM SINE Alu 1 163 -13 1192 194 75 18 chr21 6026864 6027116 -28880454 - L1MB5 LINE L1 -178 5996 5702 5300 151 5 21 chr21 6027112 6027116 -28880454 - L1MB2 LINE L1 -38 6133 5160 7123 172 18 38 chr21 6027117 6029585 -28877985 - L1MB1 LINE L1 -39 6129 3718 240 171 0 53 chr21 6030135 6030211 -28877359 + CT-rich Low_complexity Low_complexity 4 75 0 1061 201 20 126 chr21 6030407 6030850 -28876720 - L1MA8 LINE L1 -17 6274 5879 4917 101 23 1 chr21 6030870 6031561 -28876009 - THE1B-int LTR MaLR -874 706 1 1442 137 31 42 chr21 6031561 6031860 -28875710 - THE1B LTR MaLR 0 364 44 1954 134 25 0 chr21 6033222 6033505 -28874065 - AluSx SINE Alu -22 290 1 1692 178 21 45 chr21 6033705 6034042 -28873528 - MLT1C LTR MaLR -2 465 137 2647 196 25 25 chr21 6034044 6034682 -28872888 + L1PB4 LINE L1 3000 3637 -2509 1301 159 0 32 chr21 6034725 6034945 -28872625 - AluSx SINE Alu -99 213 1 3998 192 11 22 chr21 6034949 6035621 -28871949 + L1PB4 LINE L1 3623 4286 -1860 2824 88 5 39 chr21 6035621 6035660 -28871910 - THE1C LTR MaLR 0 375 336 2347 61 14 7 chr21 6035660 6035956 -28871614 + AluY SINE Alu 1 298 -13 2824 88 5 39 chr21 6035956 6036304 -28871266 - THE1C LTR MaLR -39 336 1 3998 192 11 22 chr21 6036304 6036466 -28871104 + L1PB4 LINE L1 4286 4448 -1698 7019 58 4 42 chr21 6036474 6037466 -28870104 - SVA Other Other 0 1386 433 2706 75 32 70 chr21 6037534 6038944 -28868626 - SVA Other Other -520 866 393 5003 167 21 19 chr21 6039006 6040471 -28867099 + L1PB4 LINE L1 4435 5915 -241 2129 106 0 33 chr21 6040471 6040772 -28866798 + AluSg SINE Alu 1 291 -19 5003 167 21 19 chr21 6040772 6041014 -28866556 + L1PB4 LINE L1 5915 6155 -1 648 201 21 14 chr21 6041014 6041158 -28866412 - MLT1C LTR MaLR -319 148 4 400 350 49 74 chr21 6041367 6041664 -28865906 + L2 LINE L2 2488 2772 -542 599 163 43 113 chr21 6041664 6041805 -28865765 + FLAM_A SINE Alu 1 131 -2 400 350 49 74 chr21 6041805 6041938 -28865632 + L2 LINE L2 2772 2907 -407 355 306 179 8 chr21 6041931 6042065 -28865505 - MER5A DNA MER1_type -7 182 26 386 289 78 121 chr21 6042118 6042464 -28865106 + L2 LINE L2 2932 3262 -10 332 123 0 18 chr21 6042465 6042522 -28865048 + MER50 LTR ERV1 499 554 -180 1257 52 0 0 chr21 6042540 6042694 -28864876 - AluY SINE Alu -14 297 144 740 172 7 40 chr21 6042694 6042845 -28864725 + MER50 LTR ERV1 587 732 -2 341 180 0 0 chr21 6042845 6042906 -28864664 + MER50-int LTR ERV1 43 103 -7102 243 146 0 0 chr21 6042908 6042949 -28864621 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 481 192 20 20 chr21 6043883 6043982 -28863588 - MER63 DNA MER1_type -311 751 27 275 311 85 18 chr21 6044384 6044548 -28863022 - LTR16A LTR ERVL -258 192 18 2176 258 25 25 chr21 6045072 6045627 -28861943 + MLT1H1 LTR MaLR 1 555 0 1709 149 29 11 chr21 6045687 6045968 -28861602 - AluJb SINE Alu 0 312 27 316 286 24 32 chr21 6046896 6047022 -28860548 - MIR SINE MIR -95 167 43 292 246 63 63 chr21 6047064 6047206 -28860364 - L2 LINE L2 0 3313 3172 297 243 14 0 chr21 6047781 6047855 -28859715 + MER116 DNA Mariner 1 75 -5 232 246 66 0 chr21 6047922 6047983 -28859587 + MIR SINE MIR 87 151 -111 2471 50 0 7 chr21 6048022 6048325 -28859245 + AluY SINE Alu 1 301 -10 2467 142 25 0 chr21 6048349 6048742 -28858828 - L1 LINE L1 -981 5165 4763 1077 254 98 10 chr21 6048742 6049049 -28858521 + MER69 DNA AcHobo 50 383 -843 393 224 157 8 chr21 6049438 6049572 -28857998 + MER69 DNA AcHobo 2218 2371 -155 843 169 6 52 chr21 6049575 6049791 -28857779 - AluJb SINE Alu 0 312 134 2418 73 3 3 chr21 6049791 6050093 -28857477 - AluY SINE Alu -9 302 1 451 206 66 15 chr21 6050117 6050253 -28857317 + MER69 DNA AcHobo 2375 2517 -9 440 248 73 77 chr21 6050713 6050947 -28856623 + MLT1J1 LTR MaLR 1 233 -213 302 257 28 32 chr21 6051107 6051252 -28856318 + MIR SINE MIR 61 200 -61 1653 211 60 0 chr21 6051352 6051754 -28855816 - L1MD3 LINE L1 0 7995 7570 2501 124 81 2 chr21 6051769 6052163 -28855407 - MSTA LTR MaLR 0 428 4 231 250 0 0 chr21 6052626 6052678 -28854892 + GA-rich Low_complexity Low_complexity 3 54 0 2521 41 0 3 chr21 6053449 6053743 -28853827 - AluY SINE Alu -18 293 1 1560 194 32 0 chr21 6054546 6054824 -28852746 - AluJo SINE Alu -25 287 1 2332 91 0 7 chr21 6055143 6055450 -28852120 - AluSc SINE Alu -4 305 1 1526 251 43 14 chr21 6056373 6056795 -28850775 - MER57B LTR ERV1 0 434 1 2150 153 21 30 chr21 6057357 6057840 -28849730 - MER39 LTR ERV1 0 707 178 734 188 9 0 chr21 6057844 6057956 -28849614 + AluJb SINE Alu 6 118 -194 23 33 0 0 chr21 6057962 6057992 -28849578 + AT_rich Low_complexity Low_complexity 1 30 0 949 159 94 0 chr21 6057992 6058162 -28849408 - MER39 LTR ERV1 -513 194 9 3799 139 29 10 chr21 6059511 6060147 -28847423 - MER39B LTR ERV1 -1 630 1 7225 153 31 41 chr21 6060203 6061631 -28845939 - MER39B-int LTR ERV1 -148 6183 4769 1537 188 14 24 chr21 6061627 6061915 -28845655 - MER39B-int LTR ERV1 -6046 285 1 752 187 116 30 chr21 6061919 6061996 -28845574 - MER39B LTR ERV1 -3 650 581 1598 175 24 7 chr21 6061996 6062287 -28845283 - AluJo SINE Alu -16 296 1 752 187 116 30 chr21 6062287 6062407 -28845163 - MER39B LTR ERV1 -72 581 436 655 62 0 0 chr21 6062409 6062489 -28845081 + AluSx SINE Alu 2 81 -232 2297 98 0 22 chr21 6062490 6062805 -28844765 + AluY SINE Alu 1 308 -3 1661 109 30 0 chr21 6062805 6063034 -28844536 + AluSx SINE Alu 71 307 -3 2687 134 24 61 chr21 6063034 6063329 -28844241 - MER39B LTR ERV1 -208 445 172 2643 51 0 3 chr21 6063329 6063641 -28843929 - AluY SINE Alu 0 311 1 2687 134 24 61 chr21 6063641 6063807 -28843763 - MER39B LTR ERV1 -481 172 1 876 191 84 83 chr21 6063807 6064121 -28843449 - MER39 LTR ERV1 -77 630 174 246 247 22 45 chr21 6064719 6064808 -28842762 - MER34 LTR ERV1 -13 529 443 533 241 121 36 chr21 6064913 6065242 -28842328 - LTR48 LTR ERV1 -304 483 7 214 244 0 0 chr21 6065880 6065925 -28841645 + T-rich Low_complexity Low_complexity 5 49 0 28616 34 1 1 chr21 6065927 6070127 -28837443 - L1PA4 LINE L1 0 6155 1957 21 57 0 0 chr21 6071222 6071257 -28836313 + AT_rich Low_complexity Low_complexity 1 35 0 216 158 0 0 chr21 6071395 6071433 -28836137 + (TATG)n Simple_repeat Simple_repeat 3 40 0 2226 151 43 14 chr21 6071436 6072059 -28835511 + MER39 LTR ERV1 1 707 0 207 294 29 0 chr21 6072061 6072129 -28835441 + (TATG)n Simple_repeat Simple_repeat 2 71 0 838 277 58 43 chr21 6072204 6072853 -28834717 - L1MC4a LINE L1 -1841 5967 5256 30 0 0 0 chr21 6073044 6073074 -28834496 + AT_rich Low_complexity Low_complexity 1 30 0 1681 196 14 3 chr21 6073091 6073387 -28834183 - AluJb SINE Alu -11 301 3 335 304 77 80 chr21 6073471 6073584 -28833986 - L1MC4a LINE L1 -1200 4946 4834 1684 189 0 0 chr21 6073584 6073869 -28833701 - AluJo SINE Alu -25 287 3 1914 162 0 7 chr21 6073877 6074180 -28833390 - AluJb SINE Alu -11 301 1 335 304 77 80 chr21 6074180 6074422 -28833148 - L1MC4a LINE L1 -1319 4827 4583 589 124 0 0 chr21 6074495 6074584 -28832986 - AluSg/x SINE Alu -5 304 216 4299 121 123 78 chr21 6074587 6075992 -28831578 - pTR5 LTR ERV1 0 2438 761 598 189 25 33 chr21 6075975 6076097 -28831473 - AluSp SINE Alu -57 256 136 1767 152 72 21 chr21 6076209 6076572 -28830998 + MER39 LTR ERV1 1 344 -363 1872 193 55 24 chr21 6076572 6076991 -28830579 + MSTB1 LTR MaLR 1 432 0 1767 152 72 21 chr21 6076991 6077239 -28830331 + MER39 LTR ERV1 344 707 0 282 179 15 0 chr21 6077402 6077469 -28830101 - L1MA8 LINE L1 -2 6289 6222 276 136 0 0 chr21 6077470 6077514 -28830056 - Alu SINE Alu -258 44 1 3063 179 39 23 chr21 6077575 6078268 -28829302 + MER67C LTR ERV1 7 710 0 715 232 67 74 chr21 6078276 6078573 -28828997 + MLT1J LTR MaLR 217 511 0 1492 208 61 14 chr21 6079700 6080046 -28827524 + MLT1A1 LTR MaLR 1 362 -3 917 176 7 7 chr21 6080513 6080666 -28826904 - FRAM SINE Alu -4 172 20 272 276 60 55 chr21 6080702 6080919 -28826651 - L1MC4a LINE L1 -1907 5901 5684 255 31 0 0 chr21 6082392 6082424 -28825146 + (CA)n Simple_repeat Simple_repeat 2 33 0 660 222 138 6 chr21 6082586 6082753 -28824817 - MER5A DNA MER1_type 0 189 1 75 45 0 0 chr21 6083216 6083326 -28824244 + AT_rich Low_complexity Low_complexity 1 110 0 430 210 70 0 chr21 6083326 6083426 -28824144 - MER45 DNA AcHobo -61 117 11 269 220 0 0 chr21 6083635 6083685 -28823885 + MER5A DNA MER1_type 9 58 -131 21 0 0 56 chr21 6083952 6083969 -28823601 + AT_rich Low_complexity Low_complexity 1 17 -17 2516 61 0 3 chr21 6083969 6084281 -28823289 + AluY SINE Alu 1 311 0 21 0 0 56 chr21 6084281 6084299 -28823271 + AT_rich Low_complexity Low_complexity 17 34 0 22 70 0 0 chr21 6084316 6084359 -28823211 + AT_rich Low_complexity Low_complexity 1 43 0 1566 183 20 22 chr21 6084911 6085266 -28822304 - MLT1A1 LTR MaLR -11 354 1 30062 94 10 10 chr21 6087612 6094063 -28813507 - L1PA7 LINE L1 0 6469 2 491 255 115 5 chr21 6094499 6094691 -28812879 + MIR SINE MIR 22 234 -28 24 32 0 0 chr21 6094705 6094736 -28812834 + AT_rich Low_complexity Low_complexity 1 31 0 246 62 0 0 chr21 6094845 6094877 -28812693 + (TATG)n Simple_repeat Simple_repeat 4 35 0 641 267 63 0 chr21 6095709 6095900 -28811670 + MIR SINE MIR 60 262 0 38 22 0 0 chr21 6096246 6096291 -28811279 + AT_rich Low_complexity Low_complexity 1 45 0 2385 103 3 0 chr21 6096335 6096647 -28810923 - AluSq SINE Alu 0 313 1 539 245 14 0 chr21 6096720 6096859 -28810711 - L1MC4 LINE L1 -658 7384 7244 745 247 94 50 chr21 6096915 6097389 -28810181 - L1MC4 LINE L1 -889 6919 6451 444 205 27 18 chr21 6097433 6097545 -28810025 + MER4A LTR ERV1 1 113 -551 1423 246 52 62 chr21 6097567 6098149 -28809421 + LTR34 LTR ERV1 104 679 -20 210 71 0 0 chr21 6099771 6099799 -28807771 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 1778 166 41 19 chr21 6100930 6101297 -28806273 + MLT2D LTR ERVL 38 412 -2 454 211 11 0 chr21 6101943 6102033 -28805537 - MIR3 SINE MIR -14 194 104 2028 196 23 15 chr21 6103325 6103718 -28803852 - MSTD LTR MaLR 0 396 1 234 345 109 0 chr21 6103754 6103873 -28803697 + L2 LINE L2 1853 1984 -1330 1924 168 0 22 chr21 6104152 6104467 -28803103 - AluJo SINE Alu 0 312 5 291 208 139 0 chr21 6104696 6104797 -28802773 - LTR67 LTR ERVL -10 547 433 821 236 82 71 chr21 6105875 6106163 -28801407 + L1ME2 LINE L1 5711 6007 -157 2240 103 3 0 chr21 6106163 6106455 -28801115 + AluSx SINE Alu 1 293 -19 821 236 82 71 chr21 6106455 6106615 -28800955 + L1ME2 LINE L1 6007 6164 0 306 0 0 0 chr21 6107112 6107146 -28800424 + (CA)n Simple_repeat Simple_repeat 1 34 0 23 0 0 0 chr21 6107383 6107406 -28800164 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr21 6110855 6110881 -28796689 + AT_rich Low_complexity Low_complexity 1 26 0 379 339 92 11 chr21 6111818 6111992 -28795578 + MIR SINE MIR 29 216 -46 498 232 38 63 chr21 6112206 6112521 -28795049 + L1MC5 LINE L1 7630 7936 -25 1100 138 46 6 chr21 6112643 6112817 -28794753 + AluJb SINE Alu 1 181 -131 447 237 103 43 chr21 6113295 6113331 -28794239 + MER112 DNA MER1_type 6 38 -222 1904 143 13 7 chr21 6113331 6113631 -28793939 - AluJo SINE Alu -10 302 1 447 237 103 43 chr21 6113631 6113826 -28793744 + MER112 DNA MER1_type 38 251 -9 35 0 0 0 chr21 6115766 6115801 -28791769 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 6116184 6116212 -28791358 + AT_rich Low_complexity Low_complexity 1 28 0 387 346 82 25 chr21 6117543 6117702 -28789868 + L2 LINE L2 3104 3271 -1 23 0 0 0 chr21 6117704 6117727 -28789843 + AT_rich Low_complexity Low_complexity 1 23 0 4265 58 74 71 chr21 6118757 6119133 -28788437 + L1PA7 LINE L1 5491 5871 -283 2538 48 0 0 chr21 6119133 6119428 -28788142 - AluY SINE Alu -16 295 1 4265 58 74 71 chr21 6119428 6119712 -28787858 + L1PA7 LINE L1 5871 6153 -1 1829 149 0 11 chr21 6120030 6120305 -28787265 - AluSx SINE Alu -23 289 18 1585 176 34 20 chr21 6121097 6121392 -28786178 + AluJb SINE Alu 1 299 -13 804 177 109 21 chr21 6122893 6123085 -28784485 + MER3 DNA MER1_type 1 209 0 2186 119 0 0 chr21 6123186 6123472 -28784098 - AluSq SINE Alu -27 286 1 2118 105 4 4 chr21 6124415 6124691 -28782879 + AluSq SINE Alu 1 276 -37 1243 153 181 8 chr21 6124982 6125236 -28782334 + MSTA LTR MaLR 1 298 -130 282 79 0 0 chr21 6125267 6125305 -28782265 + MSTA LTR MaLR 380 417 -11 5725 162 22 39 chr21 6125314 6126467 -28781103 + MSTA-int LTR MaLR 3 1135 -445 1155 125 29 19 chr21 6126467 6126675 -28780895 + MSTA-int LTR MaLR 1371 1580 0 1778 150 161 6 chr21 6126675 6127036 -28780534 + MSTA LTR MaLR 1 417 -11 467 281 41 6 chr21 6127501 6127672 -28779898 + L2 LINE L2 3133 3309 -4 22 35 0 0 chr21 6128137 6128166 -28779404 + AT_rich Low_complexity Low_complexity 1 29 0 1633 177 77 32 chr21 6130201 6130386 -28777184 + MSTD LTR MaLR 1 176 -220 2473 80 0 0 chr21 6130386 6130697 -28776873 + AluY SINE Alu 1 311 0 1633 177 77 32 chr21 6130697 6130890 -28776680 + MSTD LTR MaLR 176 396 0 1050 156 68 5 chr21 6131472 6131664 -28775906 - MER46A DNA MER2_type 0 236 33 440 274 120 0 chr21 6131723 6131840 -28775730 + FLAM_A SINE Alu 10 140 -2 2635 132 21 9 chr21 6132298 6132721 -28774849 - MSTA LTR MaLR 0 428 1 2262 105 7 0 chr21 6133523 6133817 -28773753 - AluSp SINE Alu -17 296 1 583 336 34 8 chr21 6134373 6134608 -28772962 + MIR SINE MIR 1 241 -21 341 239 123 15 chr21 6134603 6134733 -28772837 + MIR3 SINE MIR 63 206 -2 730 206 0 15 chr21 6134843 6134974 -28772596 - FLAM_A SINE Alu -2 131 3 22 0 0 0 chr21 6135513 6135535 -28772035 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 6137236 6137264 -28770306 + GC_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 6137528 6137559 -28770011 + GC_rich Low_complexity Low_complexity 1 31 0 224 242 30 15 chr21 6138000 6138066 -28769504 - MIR SINE MIR -103 105 39 480 299 147 0 chr21 6138272 6138429 -28769141 + MER5A DNA MER1_type 9 188 -1 956 251 67 6 chr21 6138713 6139044 -28768526 - L1ME2 LINE L1 -6 6158 5808 1415 147 4 4 chr21 6139045 6139283 -28768287 - MSTB1 LTR MaLR -1 431 194 32 0 0 0 chr21 6139292 6139324 -28768246 + AT_rich Low_complexity Low_complexity 1 32 0 385 227 20 80 chr21 6139324 6139474 -28768096 - MSTB1 LTR MaLR -239 187 47 1768 178 3 13 chr21 6139477 6139781 -28767789 + AluJb SINE Alu 5 305 -7 1120 208 56 15 chr21 6139781 6140297 -28767273 + MLT1E2 LTR MaLR 27 615 -9 997 128 64 0 chr21 6140957 6141113 -28766457 + THE1B LTR MaLR 199 364 0 1952 137 79 0 chr21 6141289 6141670 -28765900 - Tigger3(Golem) DNA MER2_type -150 2879 2469 1965 158 104 15 chr21 6141672 6142065 -28765505 - MSTA LTR MaLR 0 428 1 4010 108 24 14 chr21 6142065 6142703 -28764867 - MSTA-int LTR MaLR 0 1580 937 2002 134 152 8 chr21 6143451 6143825 -28763745 + MSTA LTR MaLR 1 428 0 2032 139 0 13 chr21 6144350 6144653 -28762917 + AluJb SINE Alu 1 299 -13 1926 145 3 3 chr21 6145087 6145390 -28762180 + AluSc SINE Alu 1 303 0 2464 158 2 34 chr21 6146084 6146532 -28761038 - MER57B LTR ERV1 0 434 1 403 338 28 28 chr21 6146661 6146803 -28760767 - L2 LINE L2 0 3313 3172 578 291 78 60 chr21 6147185 6147584 -28759986 - MLT1J2 LTR MaLR -44 406 1 584 246 95 81 chr21 6148529 6148627 -28758943 + L2 LINE L2 3026 3121 -192 237 83 0 0 chr21 6148627 6148663 -28758907 + (TA)n Simple_repeat Simple_repeat 2 37 0 584 246 95 81 chr21 6148663 6148848 -28758722 + L2 LINE L2 3121 3313 0 1864 141 3 11 chr21 6149196 6149480 -28758090 - AluJo SINE Alu -4 308 27 255 311 109 50 chr21 6149810 6149929 -28757641 - L2 LINE L2 0 3272 3147 1739 134 0 0 chr21 6150768 6151006 -28756564 + AluSx SINE Alu 6 243 -69 2571 37 0 3 chr21 6151288 6151586 -28755984 - AluY SINE Alu -14 297 1 763 152 21 14 chr21 6152846 6152991 -28754579 - LTR23 LTR ERV1 -1 436 291 474 91 13 0 chr21 6152990 6153067 -28754503 - LTR23 LTR ERV1 -356 81 4 2651 157 73 77 chr21 6154283 6155061 -28752509 - LTR49-int LTR ERV1 -1843 4488 3714 8745 144 67 78 chr21 6155188 6157277 -28750293 - LTR49-int LTR ERV1 -2709 3622 1558 263 49 24 0 chr21 6158248 6158289 -28749281 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 1263 160 69 11 chr21 6158492 6158754 -28748816 - LTR23 LTR ERV1 0 437 161 790 146 49 0 chr21 6158827 6158971 -28748599 - LTR23 LTR ERV1 -286 151 1 1750 214 102 13 chr21 6160472 6161029 -28746541 - L1ME2 LINE L1 -110 6054 5448 881 249 24 41 chr21 6161024 6161301 -28746269 + L1M4 LINE L1 5030 5304 -857 2379 86 0 0 chr21 6161301 6161604 -28745966 + AluY SINE Alu 1 303 -8 881 249 24 41 chr21 6161604 6161718 -28745852 + L1M4 LINE L1 5304 5418 -743 795 204 39 0 chr21 6162363 6162544 -28745026 - MER20 DNA MER1_type -3 216 29 829 130 163 3 chr21 6162613 6162908 -28744662 - MSTA LTR MaLR 0 428 1 230 250 77 0 chr21 6164651 6164703 -28742867 - L2 LINE L2 -12 3260 3205 579 308 78 52 chr21 6164983 6165370 -28742200 + LTR67 LTR ERVL 7 403 -154 306 246 0 0 chr21 6165432 6165497 -28742073 + MER31B LTR ERV1 4 68 -398 654 244 107 70 chr21 6165509 6166134 -28741436 + MER67A LTR ERV1 1 543 0 1159 204 108 26 chr21 6166222 6166565 -28741005 - MLT1H LTR MaLR -137 412 42 1070 191 69 20 chr21 6166803 6167106 -28740464 - MER33 DNA MER1_type 0 324 7 2300 83 0 27 chr21 6167233 6167533 -28740037 - AluSc SINE Alu -17 292 1 623 313 34 7 chr21 6167563 6167904 -28739666 - LTR16C LTR ERVL 0 491 97 1837 163 29 23 chr21 6168038 6168388 -28739182 - MLT1A1 LTR MaLR 0 365 14 2146 141 3 3 chr21 6169495 6169807 -28737763 + AluJb SINE Alu 1 312 0 2155 293 64 23 chr21 6170935 6171118 -28736452 + L2 LINE L2 1116 1290 -2024 1949 150 13 0 chr21 6171118 6171425 -28736145 - AluSx SINE Alu -1 311 1 2155 293 64 23 chr21 6171425 6172401 -28735169 + L2 LINE L2 1290 2378 -936 681 150 8 8 chr21 6172407 6172534 -28735036 - L1MB8 LINE L1 -13 6165 6039 334 113 0 0 chr21 6172540 6172593 -28734977 - L1MB8 LINE L1 -235 5943 5891 3557 136 21 59 chr21 6172593 6173306 -28734264 + Ricksha DNA DNA 2565 3250 -4 1671 176 43 0 chr21 6173313 6173636 -28733934 - L1MB8 LINE L1 -281 5897 5561 1195 225 35 59 chr21 6173770 6174143 -28733427 + L2 LINE L2 2341 2704 -610 270 152 0 0 chr21 6174160 6174206 -28733364 + Ricksha DNA DNA 3201 3246 -8 2189 124 0 6 chr21 6174985 6175300 -28732270 + AluSq SINE Alu 1 313 0 23 33 0 0 chr21 6175342 6175372 -28732198 + AT_rich Low_complexity Low_complexity 1 30 0 540 215 0 0 chr21 6175501 6175608 -28731962 - MER33 DNA MER1_type -217 107 1 390 280 75 43 chr21 6175623 6175809 -28731761 + LTR67 LTR ERVL 354 545 -12 301 261 70 42 chr21 6175904 6176046 -28731524 + MLT1I LTR MaLR 1 146 -263 1724 113 33 33 chr21 6176753 6177055 -28730515 + L1PA10 LINE L1 5867 6168 0 440 243 7 59 chr21 6177082 6177218 -28730352 - L1ME1 LINE L1 -10 6156 6028 231 36 0 0 chr21 6178057 6178085 -28729485 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 788 307 69 37 chr21 6178085 6178252 -28729318 - L2 LINE L2 -16 3297 3137 3867 115 30 13 chr21 6178252 6178852 -28728718 - MER4B LTR ERV1 0 610 1 788 307 69 37 chr21 6178852 6179120 -28728450 - L2 LINE L2 -176 3137 2848 985 326 39 14 chr21 6179319 6179828 -28727742 + ERVL LTR ERVL 3600 4121 -1643 370 245 73 40 chr21 6180003 6180154 -28727416 + ERVL LTR ERVL 4408 4563 -1201 369 0 0 0 chr21 6180930 6180971 -28726599 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 6180971 6181006 -28726564 + AT_rich Low_complexity Low_complexity 1 35 0 1291 183 4 21 chr21 6181015 6181256 -28726314 - AluJb SINE Alu -75 237 1 416 228 104 62 chr21 6181565 6181758 -28725812 + L2 LINE L2 3113 3313 0 1652 185 0 23 chr21 6182104 6182407 -28725163 + AluJb SINE Alu 1 296 -16 2215 117 3 16 chr21 6182532 6182840 -28724730 + AluSx SINE Alu 1 304 -8 1942 156 0 13 chr21 6183404 6183711 -28723859 - AluJo SINE Alu -9 303 1 226 289 90 32 chr21 6183776 6183932 -28723638 - MLT1J LTR MaLR -5 506 342 247 355 50 8 chr21 6184245 6184366 -28723204 - L2 LINE L2 -11 3261 3136 1164 149 34 0 chr21 6184403 6184611 -28722959 - MER61A LTR ERV1 0 343 129 7149 99 11 2 chr21 6184856 6186766 -28720804 + L1PA8A LINE L1 4208 6129 -2 673 316 74 47 chr21 6186843 6187314 -28720256 - L2 LINE L2 -556 2758 2275 2693 214 3 23 chr21 6187333 6187898 -28719672 - MLT2B3 LTR ERVL 0 554 1 2122 180 58 2 chr21 6187898 6188360 -28719210 - ERVL-B3 LTR ERVL -7 5757 5270 1563 146 142 0 chr21 6188362 6188650 -28718920 - ERVL-B3 LTR ERVL -695 5069 4741 10917 168 28 9 chr21 6188645 6190856 -28716714 - ERVL-B1 LTR ERVL -2286 3478 1158 22 0 0 0 chr21 6190856 6190878 -28716692 + AT_rich Low_complexity Low_complexity 1 22 0 36 23 0 0 chr21 6191125 6191168 -28716402 + AT_rich Low_complexity Low_complexity 1 43 0 405 224 80 38 chr21 6191363 6191626 -28715944 - L1M4 LINE L1 -1575 4571 4298 1453 209 7 27 chr21 6191658 6191955 -28715615 - AluJo SINE Alu -21 291 1 4778 193 57 43 chr21 6191955 6193106 -28714464 - ERVL-B1 LTR ERVL -4594 1170 4 2331 216 18 18 chr21 6193114 6193629 -28713941 - MLT2B1 LTR ERVL -5 515 1 240 345 21 7 chr21 6193629 6193771 -28713799 - L2 LINE L2 -1061 2253 2110 419 384 53 49 chr21 6193839 6194290 -28713280 - L2 LINE L2 -11 3261 2809 443 262 86 45 chr21 6194600 6194821 -28712749 + MLT1K LTR MaLR 329 558 -30 396 260 59 14 chr21 6194897 6195116 -28712454 + L1ME3A LINE L1 4382 4610 -1536 26 30 0 0 chr21 6195131 6195164 -28712406 + AT_rich Low_complexity Low_complexity 1 33 0 192 152 0 0 chr21 6195164 6195197 -28712373 + (CA)n Simple_repeat Simple_repeat 2 34 0 1975 264 49 24 chr21 6195301 6196021 -28711549 + L1ME3A LINE L1 4749 5511 -651 1723 122 106 0 chr21 6196021 6196300 -28711270 + AluSg SINE Alu 1 306 0 1975 264 49 24 chr21 6196300 6196794 -28710776 + L1ME3A LINE L1 5511 5991 -171 474 284 15 8 chr21 6196799 6196933 -28710637 + L1ME3A LINE L1 6029 6163 -7 2468 74 0 13 chr21 6197204 6197515 -28710055 + AluSx SINE Alu 1 307 -5 1051 178 44 0 chr21 6198093 6198273 -28709297 + AluJb SINE Alu 124 311 -1 198 150 0 0 chr21 6199215 6199255 -28708315 + (TG)n Simple_repeat Simple_repeat 2 41 0 1778 78 16 4 chr21 6199712 6199954 -28707616 + L1PA7 LINE L1 5907 6151 -3 2283 109 0 3 chr21 6200031 6200343 -28707227 - AluY SINE Alu 0 311 1 1998 143 10 0 chr21 6200513 6200813 -28706757 + AluJb SINE Alu 1 303 -9 2396 56 0 23 chr21 6202095 6202400 -28705170 - AluY SINE Alu -13 298 1 520 333 16 16 chr21 6204606 6204849 -28702721 + MLT1J2 LTR MaLR 37 279 -171 737 214 51 39 chr21 6204868 6205141 -28702429 + Charlie4a DNA MER1_type 78 357 -1604 1700 169 43 7 chr21 6205141 6205420 -28702150 + AluJo SINE Alu 1 289 -23 737 214 51 39 chr21 6205420 6205478 -28702092 + Charlie4a DNA MER1_type 357 413 -95 523 249 73 12 chr21 6205699 6205864 -28701706 - MER105 DNA DNA -29 175 1 26 0 0 0 chr21 6206776 6206802 -28700768 + AT_rich Low_complexity Low_complexity 1 26 0 800 241 61 45 chr21 6207026 6207475 -28700095 + MLT2B1 LTR ERVL 4 464 0 1836 116 84 0 chr21 6208944 6209219 -28698351 - AluSx SINE Alu -14 298 1 621 51 0 0 chr21 6209572 6209651 -28697919 + MADE1 DNA Mariner 1 79 -1 575 230 56 31 chr21 6210809 6211005 -28696565 + MLT1J2 LTR MaLR 1 201 -249 333 214 84 71 chr21 6211345 6211499 -28696071 - L1MC4 LINE L1 0 8042 7887 505 275 73 35 chr21 6211510 6211852 -28695718 - L1MC4 LINE L1 -218 7824 7470 13420 199 18 11 chr21 6212395 6213182 -28694388 - L1PB1 LINE L1 -2 6865 6085 2303 104 0 0 chr21 6213182 6213481 -28694089 - AluY SINE Alu -12 299 1 13420 199 18 11 chr21 6213481 6217534 -28690036 - L1PB1 LINE L1 -782 6085 1724 2716 85 95 5 chr21 6217534 6217945 -28689625 - LTR7 LTR ERV1 -2 448 1 13420 199 18 11 chr21 6217945 6218582 -28688988 - L1PB1 LINE L1 -5143 1724 1093 1883 192 12 7 chr21 6218585 6219001 -28688569 - L1PB1 LINE L1 -5817 1046 629 1315 287 36 4 chr21 6219046 6219575 -28687995 - L1PB1 LINE L1 -6312 551 6 2594 42 0 0 chr21 6220023 6220334 -28687236 - AluY SINE Alu 0 311 1 1901 179 10 37 chr21 6220339 6220742 -28686828 + MLT2C1 LTR ERVL 6 397 0 1339 243 34 29 chr21 6221712 6221796 -28685774 - MER63B DNA MER1_type -652 410 328 1812 148 3 30 chr21 6221796 6222093 -28685477 + AluJo SINE Alu 1 289 -23 1339 243 34 29 chr21 6222093 6222416 -28685154 - MER63B DNA MER1_type -734 328 1 259 261 67 101 chr21 6222506 6222549 -28685021 - L2 LINE L2 0 3272 3229 1749 246 20 13 chr21 6222549 6223008 -28684562 + LTR40b LTR ERVL 1 462 0 259 261 67 101 chr21 6223008 6223083 -28684487 - L2 LINE L2 -43 3229 3158 23 54 0 0 chr21 6223113 6223150 -28684420 + AT_rich Low_complexity Low_complexity 1 37 0 844 123 0 8 chr21 6223326 6223456 -28684114 + FLAM_C SINE Alu 2 130 -3 1846 93 6 121 chr21 6224262 6224594 -28682976 + AluSx SINE Alu 1 294 -8 2329 83 0 0 chr21 6225489 6225790 -28681780 + AluY SINE Alu 1 301 -10 13762 22 7 0 chr21 6225951 6228339 -28679231 - L1PA3 LINE L1 -2 6153 3756 29 70 0 0 chr21 6228391 6228448 -28679122 + AT_rich Low_complexity Low_complexity 1 57 0 2414 50 0 0 chr21 6228944 6229226 -28678344 + AluY SINE Alu 30 311 0 232 125 25 0 chr21 6229268 6229308 -28678262 - MER63B DNA MER1_type -395 41 1 738 203 11 103 chr21 6229692 6229802 -28677768 + MER96B DNA MER1_type? 2 121 -296 1377 136 7 61 chr21 6229802 6229992 -28677578 - L1PB2 LINE L1 -2 6149 5977 2563 46 0 10 chr21 6229992 6230299 -28677271 - AluY SINE Alu -7 304 1 1377 136 7 61 chr21 6230299 6230387 -28677183 - L1PB2 LINE L1 -174 5977 5886 738 203 11 103 chr21 6230387 6230547 -28677023 + MER96B DNA MER1_type? 121 247 -170 348 296 44 0 chr21 6231191 6231326 -28676244 - MIR SINE MIR 0 262 122 1062 252 45 0 chr21 6231972 6232238 -28675332 - MLT1A1 LTR MaLR -6 359 82 1116 216 29 22 chr21 6232242 6232515 -28675055 + MER21B LTR ERV1 156 430 -433 22 0 0 0 chr21 6234258 6234280 -28673290 + AT_rich Low_complexity Low_complexity 1 22 0 422 306 89 60 chr21 6234358 6234694 -28672876 - L1M4 LINE L1 -1391 4755 4410 2645 193 10 25 chr21 6234814 6235337 -28672233 + MLT2B2 LTR ERVL 1 515 0 698 278 57 5 chr21 6235475 6235669 -28671901 - LTR33 LTR ERVL -317 204 1 255 61 0 0 chr21 6235732 6235765 -28671805 + (TG)n Simple_repeat Simple_repeat 2 34 0 716 260 20 15 chr21 6236076 6236162 -28671408 + MIR SINE MIR 66 150 -112 1780 147 87 35 chr21 6236162 6236508 -28671062 - THE1B LTR MaLR 0 364 1 11719 97 8 4 chr21 6236508 6238083 -28669487 - THE1B-int LTR MaLR 0 1580 1 2427 127 5 19 chr21 6238083 6238452 -28669118 - THE1B LTR MaLR 0 364 1 716 260 20 15 chr21 6238452 6238559 -28669011 + MIR SINE MIR 149 262 0 283 161 65 0 chr21 6238828 6238886 -28668684 + MLT1J LTR MaLR 106 167 -344 1209 217 15 51 chr21 6238886 6239222 -28668348 - MLT2D LTR ERVL 0 414 91 626 322 47 16 chr21 6239253 6239570 -28668000 + MLT1J2 LTR MaLR 121 447 -3 1539 136 11 79 chr21 6240618 6240979 -28666591 - MER4A LTR ERV1 0 664 270 616 102 10 10 chr21 6240993 6241091 -28666479 - MER4A LTR ERV1 -566 98 1 253 252 9 96 chr21 6241172 6241287 -28666283 - MIR SINE MIR -77 185 81 2261 104 0 3 chr21 6241321 6241619 -28665951 - AluSg SINE Alu -13 297 1 2084 126 32 29 chr21 6244258 6244632 -28662938 - THE1C LTR MaLR 0 375 1 294 73 0 0 chr21 6244836 6244877 -28662693 + (CA)n Simple_repeat Simple_repeat 2 42 0 517 133 38 0 chr21 6244881 6244986 -28662584 + (TATG)n Simple_repeat Simple_repeat 2 110 0 345 207 21 11 chr21 6244986 6245080 -28662490 + L1MC4 LINE L1 1995 6981 -1341 212 175 0 0 chr21 6245667 6245707 -28661863 + L2 LINE L2 3273 3312 -1 204 363 89 14 chr21 6246263 6246409 -28661161 - L2 LINE L2 -222 3050 2894 1374 264 41 14 chr21 6247241 6247657 -28659913 + L1PB4 LINE L1 10 436 -6413 352 192 0 68 chr21 6247852 6247925 -28659645 + L1PB4 LINE L1 412 479 -6370 350 232 37 49 chr21 6248103 6248185 -28659385 + L1PB4 LINE L1 402 482 -6367 888 306 95 69 chr21 6248262 6248651 -28658919 + L1PB4 LINE L1 668 1066 -5783 1453 209 11 3 chr21 6249254 6249612 -28657958 + L1PB4 LINE L1 1679 2039 -4809 4903 161 15 18 chr21 6249617 6250577 -28656993 + L1PB4 LINE L1 5648 6610 -248 7828 72 3 2 chr21 6250577 6251545 -28656025 - LTR5 LTR ERVK 0 969 1 4903 161 15 18 chr21 6251545 6251617 -28655953 + L1PB4 LINE L1 6610 6681 -177 2245 109 7 7 chr21 6251617 6251920 -28655650 + AluSc SINE Alu 1 303 -6 4903 161 15 18 chr21 6251920 6252100 -28655470 + L1PB4 LINE L1 6681 6858 0 746 289 8 36 chr21 6253028 6253281 -28654289 - MIR SINE MIR -8 254 9 2243 98 0 26 chr21 6254652 6254959 -28652611 + AluSg SINE Alu 1 299 -11 265 320 39 29 chr21 6255679 6255782 -28651788 - L2 LINE L2 0 3313 3210 192 97 0 0 chr21 6256242 6256273 -28651297 + (TA)n Simple_repeat Simple_repeat 2 32 0 2498 57 0 10 chr21 6256322 6256636 -28650934 - AluY SINE Alu 0 311 1 2287 167 12 2 chr21 6256930 6257350 -28650220 - L1MB1 LINE L1 -1 6167 5744 32 57 0 0 chr21 6257371 6257424 -28650146 + AT_rich Low_complexity Low_complexity 1 53 0 626 262 23 0 chr21 6257817 6257989 -28649581 + MER45A DNA AcHobo 1 176 -2 527 287 57 32 chr21 6257993 6258307 -28649263 + L1ME3A LINE L1 5578 5899 -271 207 0 0 0 chr21 6259145 6259168 -28648402 + (T)n Simple_repeat Simple_repeat 1 23 0 24 32 0 0 chr21 6259486 6259517 -28648053 + AT_rich Low_complexity Low_complexity 1 31 0 1923 168 14 24 chr21 6259568 6259937 -28647633 - MLT1A1 LTR MaLR 0 365 1 2427 131 28 0 chr21 6260081 6260433 -28647137 + THE1B LTR MaLR 1 362 -2 881 264 14 71 chr21 6260531 6260627 -28646943 + MLT2C1 LTR ERVL 1 101 -296 2026 151 140 8 chr21 6260627 6261005 -28646565 + MSTA LTR MaLR 1 428 0 881 264 14 71 chr21 6261005 6261329 -28646241 + MLT2C1 LTR ERVL 101 397 0 2194 291 43 18 chr21 6261375 6262115 -28645455 + L1M3b LINE L1 1 759 -5522 2560 276 36 23 chr21 6262209 6262787 -28644783 + L1M3b LINE L1 617 1186 -5165 2304 77 7 7 chr21 6262787 6263084 -28644486 + AluY SINE Alu 1 297 -14 2560 276 36 23 chr21 6263084 6263890 -28643680 + L1M3b LINE L1 1186 2034 -4317 2165 58 0 11 chr21 6263994 6264270 -28643300 + AluY SINE Alu 1 273 -38 449 151 47 0 chr21 6264272 6264358 -28643212 + L1M1 LINE L1 2920 3009 -4556 1674 204 43 11 chr21 6264362 6264889 -28642681 - L1 LINE L1 -3594 3971 3385 1297 219 9 0 chr21 6264938 6265253 -28642317 + L1M1 LINE L1 4125 4442 -3123 3344 178 44 1 chr21 6265254 6265391 -28642179 + L1PB4 LINE L1 5156 5286 -870 282 29 0 0 chr21 6265391 6265426 -28642144 + (CA)n Simple_repeat Simple_repeat 2 36 0 3344 178 44 1 chr21 6265426 6266165 -28641405 + L1PB4 LINE L1 5286 6154 -2 2739 172 68 3 chr21 6266181 6266814 -28640756 + L1M1 LINE L1 4434 5107 -2458 204 213 0 0 chr21 6267825 6267872 -28639698 + A-rich Low_complexity Low_complexity 1 47 0 347 0 23 0 chr21 6268351 6268394 -28639176 + (CA)n Simple_repeat Simple_repeat 2 45 0 288 0 0 0 chr21 6268966 6268998 -28638572 + (TG)n Simple_repeat Simple_repeat 2 33 0 978 310 69 33 chr21 6269482 6269810 -28637760 + L1MEc LINE L1 995 1310 -5086 1417 176 151 7 chr21 6269810 6270082 -28637488 + AluJo SINE Alu 1 311 -1 978 310 69 33 chr21 6270082 6270602 -28636968 + L1MEc LINE L1 1310 1902 -4494 1882 127 66 33 chr21 6270602 6270964 -28636606 - THE1C LTR MaLR -1 374 1 978 310 69 33 chr21 6270964 6271153 -28636417 + L1MEc LINE L1 1902 2083 -4313 955 215 0 0 chr21 6271178 6271350 -28636220 + FRAM SINE Alu 1 171 -5 1111 251 60 72 chr21 6271352 6271590 -28635980 + L1MEc LINE L1 2107 2346 -3869 2188 109 3 0 chr21 6271590 6271875 -28635695 + AluSg SINE Alu 3 288 -22 1111 251 60 72 chr21 6271875 6272192 -28635378 + L1MEc LINE L1 2346 2623 -3592 2331 171 16 63 chr21 6272193 6272697 -28634873 + MLT2B1 LTR ERVL 1 480 -40 79 44 0 0 chr21 6272697 6272811 -28634759 + AT_rich Low_complexity Low_complexity 1 114 0 842 140 0 42 chr21 6272811 6272954 -28634616 - MLT1A1 LTR MaLR -2 363 227 2348 165 31 10 chr21 6273932 6274345 -28633225 + MSTB LTR MaLR 1 422 -4 1654 164 11 11 chr21 6274375 6274656 -28632914 - MLT1A1 LTR MaLR -2 363 83 1116 154 27 0 chr21 6274702 6274890 -28632680 + MLT2B1 LTR ERVL 1 193 -327 384 102 34 0 chr21 6274895 6274954 -28632616 - MLT1A1 LTR MaLR -273 92 32 262 358 57 39 chr21 6274970 6275352 -28632218 + L2 LINE L2 2456 2887 -427 182 0 64 85 chr21 6275567 6275614 -28631956 + (TAAAAA)n Simple_repeat Simple_repeat 6 51 0 276 387 18 35 chr21 6276042 6276326 -28631244 - L3 LINE CR1 -331 1246 968 21 0 0 0 chr21 6278145 6278166 -28629404 + AT_rich Low_complexity Low_complexity 1 21 0 301 286 26 0 chr21 6278911 6278988 -28628582 + L2 LINE L2 3230 3308 -5 2383 68 0 3 chr21 6280640 6280955 -28626615 + AluY SINE Alu 1 314 0 2313 144 11 3 chr21 6281195 6281556 -28626014 - THE1B LTR MaLR 0 364 1 220 273 0 0 chr21 6282182 6282237 -28625333 + (CA)n Simple_repeat Simple_repeat 1 55 0 22 35 0 0 chr21 6282898 6282927 -28624643 + AT_rich Low_complexity Low_complexity 1 29 0 243 88 0 0 chr21 6283300 6283334 -28624236 + (TCC)n Simple_repeat Simple_repeat 3 36 0 22 0 0 0 chr21 6283767 6283789 -28623781 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr21 6283884 6283917 -28623653 + AT_rich Low_complexity Low_complexity 1 33 0 2063 120 10 0 chr21 6284750 6285042 -28622528 - AluSx SINE Alu -17 295 1 182 298 0 0 chr21 6285667 6285714 -28621856 - L2 LINE L2 -8 3305 3259 192 393 0 0 chr21 6286509 6286570 -28621000 + L2 LINE L2 3205 3265 -7 940 92 0 0 chr21 6288459 6288590 -28618980 - L1PB1 LINE L1 0 6151 6021 6993 58 5 0 chr21 6288598 6289491 -28618079 - L1PA7 LINE L1 -3 6151 5255 12618 85 12 5 chr21 6289489 6291248 -28616322 + L1PA7 LINE L1 3467 5239 -907 2332 80 6 16 chr21 6291264 6291576 -28615994 - AluY SINE Alu 0 311 3 1953 139 4 0 chr21 6292121 6292428 -28615142 - AluSg SINE Alu 0 308 1 246 119 75 0 chr21 6292778 6292845 -28614725 + (TA)n Simple_repeat Simple_repeat 1 72 0 716 115 0 0 chr21 6292904 6293008 -28614562 + AluSg1 SINE Alu 1 104 -205 1869 121 99 10 chr21 6293008 6293321 -28614249 + L1PA15 LINE L1 5825 6165 0 215 336 40 80 chr21 6293360 6293610 -28613960 + L2 LINE L2 2813 3052 -220 1307 158 10 0 chr21 6293948 6294157 -28613413 + AluSg1 SINE Alu 100 310 0 22 70 0 0 chr21 6294557 6294600 -28612970 + AT_rich Low_complexity Low_complexity 1 43 0 343 295 41 8 chr21 6294944 6295066 -28612504 - MIR SINE MIR -40 222 97 2197 83 20 20 chr21 6295217 6295518 -28612052 - AluSc SINE Alu -8 301 1 1941 92 0 11 chr21 6295539 6295799 -28611771 + AluSc SINE Alu 45 301 -8 2408 217 32 40 chr21 6295848 6296000 -28611570 - MLT1E2 LTR MaLR 0 626 474 2242 98 0 0 chr21 6296000 6296295 -28611275 + AluSg SINE Alu 1 295 -15 2468 71 3 0 chr21 6296295 6296605 -28610965 + AluY SINE Alu 1 311 0 2408 217 32 40 chr21 6296605 6297082 -28610488 - MLT1E2 LTR MaLR -150 476 1 257 246 237 61 chr21 6298743 6298857 -28608713 + MIR SINE MIR 20 153 -109 22 0 0 0 chr21 6299250 6299272 -28608298 + AT_rich Low_complexity Low_complexity 1 22 0 2025 99 0 65 chr21 6300552 6300875 -28606695 - AluSx SINE Alu -2 310 9 309 335 60 28 chr21 6301300 6301584 -28605986 - L1MC/D LINE L1 -2404 5591 5299 3207 182 87 35 chr21 6301597 6302332 -28605238 - L1MA10 LINE L1 -9 6325 5553 398 291 30 20 chr21 6302895 6303098 -28604472 - L1MC/D LINE L1 -1486 4660 4456 1009 178 7 4 chr21 6303644 6303960 -28603610 - MLT1A1 LTR MaLR -11 354 4 25 65 0 0 chr21 6303984 6304030 -28603540 + AT_rich Low_complexity Low_complexity 1 46 0 4814 73 3 0 chr21 6304035 6304665 -28602905 - L1PA7 LINE L1 -11 6143 5512 241 210 89 73 chr21 6304938 6305062 -28602508 + L3 LINE CR1 825 950 -627 5249 22 0 0 chr21 6306256 6306857 -28600713 - L1PA3 LINE L1 0 6155 5555 35 24 0 0 chr21 6308028 6308070 -28599500 + AT_rich Low_complexity Low_complexity 1 42 0 243 222 12 37 chr21 6308072 6308153 -28599417 + (TCTCTG)n Simple_repeat Simple_repeat 4 82 0 5842 158 22 25 chr21 6308536 6310575 -28596995 - L1MA4 LINE L1 0 7002 4949 225 0 0 0 chr21 6310577 6310602 -28596968 + (T)n Simple_repeat Simple_repeat 1 25 0 1351 114 10 0 chr21 6310618 6310811 -28596759 - AluSp SINE Alu -118 195 1 1342 164 36 29 chr21 6310812 6311068 -28596502 - L1MA4 LINE L1 -1904 4944 4684 4395 115 3 3 chr21 6311068 6311727 -28595843 - L1PA13 LINE L1 0 6163 5505 1314 207 17 0 chr21 6311727 6312075 -28595495 - L1MA4 LINE L1 -2754 4094 3741 2238 291 80 57 chr21 6312080 6313470 -28594100 - L1MA4 LINE L1 -5473 1376 8 197 235 139 70 chr21 6314226 6314341 -28593229 + L2 LINE L2 3127 3249 -23 340 335 68 31 chr21 6314544 6314705 -28592865 + L3 LINE CR1 1354 1520 -57 2505 104 0 30 chr21 6315382 6315746 -28591824 - THE1A LTR MaLR 0 355 3 11636 96 5 0 chr21 6315748 6317320 -28590250 - THE1A-int LTR MaLR 0 1580 1 2508 110 3 3 chr21 6317320 6317675 -28589895 - THE1A LTR MaLR 0 355 1 207 0 0 0 chr21 6319633 6319656 -28587914 + (T)n Simple_repeat Simple_repeat 1 23 0 22 56 0 0 chr21 6320297 6320333 -28587237 + AT_rich Low_complexity Low_complexity 1 36 0 2561 30 7 3 chr21 6320701 6321006 -28586564 + AluY SINE Alu 1 306 -5 63 26 0 0 chr21 6321226 6321303 -28586267 + AT_rich Low_complexity Low_complexity 1 77 0 288 238 25 25 chr21 6321303 6321383 -28586187 - MIR SINE MIR 0 262 183 1958 170 128 0 chr21 6321563 6321939 -28585631 - LTR64 LTR ERVK -29 529 106 213 339 74 25 chr21 6322563 6322684 -28584886 + MIR SINE MIR 70 196 -66 186 159 0 114 chr21 6322892 6322936 -28584634 - MIR SINE MIR -111 151 113 887 255 20 24 chr21 6322980 6323227 -28584343 + MIR SINE MIR 6 251 -11 1186 93 116 28 chr21 6323632 6323737 -28583833 + L1PA10 LINE L1 5934 6028 -140 2094 135 8 42 chr21 6323737 6324114 -28583456 + THE1B LTR MaLR 1 364 0 1186 93 116 28 chr21 6324114 6324224 -28583346 + L1PA10 LINE L1 6028 6168 0 2399 158 62 58 chr21 6326006 6326168 -28581402 - L1MA10 LINE L1 0 6334 6174 210 37 0 0 chr21 6326168 6326195 -28581375 + (TG)n Simple_repeat Simple_repeat 2 28 0 2399 158 62 58 chr21 6326195 6326565 -28581005 - L1MA10 LINE L1 -160 6174 5800 25 51 0 0 chr21 6327323 6327362 -28580208 + AT_rich Low_complexity Low_complexity 1 39 0 2082 70 0 0 chr21 6327504 6327760 -28579810 + AluY SINE Alu 39 294 -17 1701 35 8 97 chr21 6327928 6328185 -28579385 + AluY SINE Alu 76 309 -2 300 170 75 0 chr21 6329805 6329858 -28577712 - L2 LINE L2 -5 3308 3252 30 45 0 0 chr21 6330933 6330977 -28576593 + AT_rich Low_complexity Low_complexity 1 44 0 789 231 18 0 chr21 6330985 6331154 -28576416 + LTR16C LTR ERVL 320 491 0 2410 87 0 0 chr21 6331495 6331794 -28575776 - AluSx SINE Alu -13 299 1 1871 116 3 14 chr21 6332063 6332348 -28575222 + L1PA16 LINE L1 5719 6000 -166 2156 196 49 0 chr21 6332348 6332756 -28574814 + MSTA LTR MaLR 1 428 0 1308 158 18 0 chr21 6332756 6332978 -28574592 + MSTA-int LTR MaLR 1 226 -1425 2140 136 125 10 chr21 6332978 6333361 -28574209 + MSTA LTR MaLR 1 427 -1 4822 200 31 4 chr21 6333362 6334322 -28573248 + MSTA-int LTR MaLR 1 986 -665 287 118 0 212 chr21 6334329 6334414 -28573156 + MSTA-int LTR MaLR 714 780 -871 4365 127 6 12 chr21 6334409 6335070 -28572500 + MSTA-int LTR MaLR 923 1579 -1 1120 132 162 17 chr21 6335071 6335306 -28572264 + MSTA LTR MaLR 1 269 -159 4676 190 16 11 chr21 6335306 6336163 -28571407 + MSTA-int LTR MaLR 790 1651 0 2361 182 44 0 chr21 6336165 6336572 -28570998 + MSTA LTR MaLR 3 427 -1 341 102 0 0 chr21 6336604 6336653 -28570917 - MADE1 DNA Mariner -30 50 2 1628 128 28 7 chr21 6337196 6337486 -28570084 + L1MA3 LINE L1 6010 6305 0 21 57 0 0 chr21 6337511 6337546 -28570024 + AT_rich Low_complexity Low_complexity 1 35 0 523 309 73 29 chr21 6337581 6337856 -28569714 - MLT1I LTR MaLR -50 359 73 541 247 39 26 chr21 6338520 6338674 -28568896 + MLT1A2 LTR MaLR 1 156 -218 740 145 8 8 chr21 6338682 6338799 -28568771 + FLAM_C SINE Alu 1 117 -16 259 246 14 14 chr21 6338944 6339013 -28568557 - L2 LINE L2 -1061 2253 2185 709 194 0 87 chr21 6339732 6339928 -28567642 + MLT1A2 LTR MaLR 1 179 -195 916 247 65 55 chr21 6339941 6340398 -28567172 - MLT1C LTR MaLR 0 467 1 24 32 0 0 chr21 6343443 6343474 -28564096 + AT_rich Low_complexity Low_complexity 1 31 0 2055 153 8 33 chr21 6343490 6343888 -28563682 - MLT1B LTR MaLR -2 388 1 391 271 90 15 chr21 6343889 6344022 -28563548 + L2 LINE L2 3171 3313 0 1558 204 14 3 chr21 6344855 6345140 -28562430 + AluJo SINE Alu 1 288 -24 1630 211 14 27 chr21 6345537 6345907 -28561663 + MLT1A1 LTR MaLR 1 365 0 272 26 0 26 chr21 6346069 6346107 -28561463 + (TCCCC)n Simple_repeat Simple_repeat 1 37 0 501 62 0 0 chr21 6346128 6346193 -28561377 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 371 259 37 74 chr21 6346221 6346275 -28561295 + L2 LINE L2 3176 3230 -83 2368 97 0 6 chr21 6346275 6346586 -28560984 + AluSq SINE Alu 1 309 -4 371 259 37 74 chr21 6346586 6346666 -28560904 + L2 LINE L2 3230 3305 -8 1153 259 86 70 chr21 6347878 6348432 -28559138 + MLT1F1 LTR MaLR 1 564 -3 205 208 139 56 chr21 6348752 6348824 -28558746 + L3 LINE CR1 373 450 -1127 1372 157 35 7 chr21 6349927 6350213 -28557357 + L1MA8 LINE L1 5993 6286 -5 539 256 23 40 chr21 6350280 6350456 -28557114 + ERVL LTR ERVL 2291 2463 -3301 681 329 91 15 chr21 6350734 6351278 -28556292 - L2 LINE L2 0 3313 2690 4209 270 66 7 chr21 6353052 6354524 -28553046 - L1MEc LINE L1 -4296 1920 108 302 289 55 0 chr21 6355756 6355884 -28551686 - L1MEc LINE L1 -4856 1540 1406 251 337 66 33 chr21 6355991 6356172 -28551398 + HAL1b LINE L1 406 592 -756 27 49 0 0 chr21 6357642 6357683 -28549887 + AT_rich Low_complexity Low_complexity 1 41 0 393 310 54 16 chr21 6359089 6359273 -28548297 + MIR SINE MIR 18 208 -54 22 0 0 0 chr21 6359818 6359840 -28547730 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr21 6360027 6360055 -28547515 + AT_rich Low_complexity Low_complexity 1 28 0 4471 196 70 22 chr21 6361057 6361577 -28545993 + MER45B DNA AcHobo 1 495 -1086 1956 106 80 40 chr21 6361577 6361927 -28545643 - THE1B LTR MaLR 0 364 1 4471 196 70 22 chr21 6361927 6362399 -28545171 + MER45B DNA AcHobo 495 1040 0 605 354 78 16 chr21 6362715 6363085 -28544485 - L2 LINE L2 0 3313 2921 1058 244 82 53 chr21 6363094 6363498 -28544072 + MLT1C LTR MaLR 1 421 -46 1368 180 32 122 chr21 6363498 6363899 -28543671 + MLT1A1 LTR MaLR 1 365 0 1058 244 82 53 chr21 6363899 6363948 -28543622 + MLT1C LTR MaLR 421 467 0 398 362 86 40 chr21 6363948 6364368 -28543202 - L2 LINE L2 -398 2916 2478 23 0 0 0 chr21 6365275 6365298 -28542272 + AT_rich Low_complexity Low_complexity 1 23 0 2162 155 18 25 chr21 6367355 6367748 -28539822 - MLT1B LTR MaLR 0 390 1 351 303 85 38 chr21 6367773 6367984 -28539586 - L2 LINE L2 -18 3295 3075 569 309 65 78 chr21 6368052 6368719 -28538851 - L2 LINE L2 -419 2895 2238 3516 39 0 2 chr21 6368789 6369220 -28538350 - L1PA7 LINE L1 0 6154 5725 21 0 0 0 chr21 6369264 6369285 -28538285 + AT_rich Low_complexity Low_complexity 1 21 0 325 174 20 60 chr21 6371715 6371864 -28535706 + (TA)n Simple_repeat Simple_repeat 2 144 0 268 250 0 0 chr21 6371995 6372063 -28535507 + (TA)n Simple_repeat Simple_repeat 1 68 0 1495 164 46 7 chr21 6372261 6372542 -28535028 + L1MA7 LINE L1 5776 6067 -224 736 145 72 20 chr21 6372543 6372695 -28534875 + L1MA7 LINE L1 6127 6286 -5 225 403 22 17 chr21 6372762 6372943 -28534627 + L2 LINE L2 870 1051 -2263 646 258 11 0 chr21 6373935 6374121 -28533449 - HAL1 LINE L1 -810 1697 1510 40 79 0 0 chr21 6374160 6374249 -28533321 + AT_rich Low_complexity Low_complexity 1 89 0 821 271 67 38 chr21 6374249 6375074 -28532496 - HAL1 LINE L1 -1050 1457 557 1713 153 28 22 chr21 6375197 6375517 -28532053 - L1MC1 LINE L1 -8 6325 6004 1635 158 7 3 chr21 6375702 6376005 -28531565 - L1MA5 LINE L1 -10 6290 5987 3251 96 38 8 chr21 6376005 6376505 -28531065 + L1MA5 LINE L1 5435 5949 -351 1257 235 35 61 chr21 6376852 6377247 -28530323 + MLT1B LTR MaLR 1 385 -5 1364 86 109 5 chr21 6377359 6377580 -28529990 - L1PA11 LINE L1 0 6174 5931 542 121 0 0 chr21 6377582 6377665 -28529905 + L1PA11 LINE L1 5867 5949 -219 474 349 53 19 chr21 6377706 6378024 -28529546 + L2 LINE L2 2377 2705 -609 1905 144 18 0 chr21 6378033 6378337 -28529233 + AluJb SINE Alu 1 309 0 1201 171 0 14 chr21 6380126 6380337 -28527233 - AluSx SINE Alu -70 242 35 2222 103 0 0 chr21 6380348 6380638 -28526932 + AluSx SINE Alu 5 294 -18 203 229 0 0 chr21 6380736 6380771 -28526799 + polypurine Low_complexity Low_complexity 4 38 0 212 250 0 45 chr21 6381698 6381786 -28525784 + CT-rich Low_complexity Low_complexity 1 84 0 316 258 62 39 chr21 6382132 6382260 -28525310 + L2 LINE L2 3182 3312 -1 919 257 18 37 chr21 6382337 6382609 -28524961 + MLT2B1 LTR ERVL 198 464 -56 253 137 78 0 chr21 6382669 6382720 -28524850 + MLT2B1 LTR ERVL 461 515 0 2050 147 10 70 chr21 6384500 6384915 -28522655 + MLT1B LTR MaLR 1 390 0 2174 182 34 43 chr21 6385075 6385543 -28522027 + MLT1C LTR MaLR 3 466 -1 23 0 0 0 chr21 6385922 6385945 -28521625 + AT_rich Low_complexity Low_complexity 1 23 0 2298 108 0 0 chr21 6386050 6386357 -28521213 - AluSq SINE Alu -6 307 1 637 274 38 5 chr21 6386749 6386935 -28520635 - LTR40b LTR ERVL -93 369 178 209 83 28 0 chr21 6387382 6387418 -28520152 + (TA)n Simple_repeat Simple_repeat 2 38 0 918 139 0 0 chr21 6387636 6387765 -28519805 - AluJo SINE Alu -178 134 6 206 200 0 0 chr21 6387777 6387812 -28519758 + polypyrimidine Low_complexity Low_complexity 2 36 0 518 108 12 0 chr21 6387812 6387895 -28519675 + (TTCCC)n Simple_repeat Simple_repeat 1 84 0 232 204 19 0 chr21 6387901 6387955 -28519615 + T-rich Low_complexity Low_complexity 5 59 0 798 83 58 0 chr21 6387974 6388094 -28519476 + L1PB1 LINE L1 6022 6148 -3 398 239 11 0 chr21 6388366 6388454 -28519116 - LTR40a LTR ERVL -275 244 156 2102 131 3 0 chr21 6389007 6389305 -28518265 - AluSg SINE Alu -11 299 1 197 348 36 22 chr21 6389306 6389444 -28518126 + L2 LINE L2 2617 2756 -558 201 60 0 90 chr21 6389563 6389630 -28517940 + (CATTT)n Simple_repeat Simple_repeat 1 61 0 29 60 0 0 chr21 6391746 6391796 -28515774 + AT_rich Low_complexity Low_complexity 1 50 0 481 283 26 7 chr21 6393307 6393459 -28514111 + MIR SINE MIR 30 184 -78 1693 246 3 6 chr21 6393603 6393969 -28513601 + MLT1A1 LTR MaLR 1 365 0 2521 163 41 19 chr21 6393975 6394579 -28512991 + MLT1A1-int LTR MaLR 6 711 -1024 601 279 56 42 chr21 6394594 6394832 -28512738 + MLT1A1-int LTR MaLR 1016 1303 -432 1872 226 25 30 chr21 6394870 6395343 -28512227 + MLT1A1-int LTR MaLR 1264 1734 -1 1971 167 28 31 chr21 6395345 6395705 -28511865 + MLT1A1 LTR MaLR 2 360 -5 2611 93 3 35 chr21 6395981 6396357 -28511213 - THE1B LTR MaLR 0 364 1 572 277 75 0 chr21 6396638 6396826 -28510744 - MIR SINE MIR -56 206 5 1855 170 27 16 chr21 6396839 6397215 -28510355 - L1PB4 LINE L1 0 6858 6479 188 101 50 59 chr21 6397221 6397340 -28510230 + (TA)n Simple_repeat Simple_repeat 1 118 0 253 165 46 46 chr21 6397355 6397464 -28510106 + (TA)n Simple_repeat Simple_repeat 1 109 0 717 177 4 9 chr21 6397468 6397608 -28509962 - L1P2 LINE L1 -348 5806 5664 303 247 0 0 chr21 6397589 6397662 -28509908 + L1P4 LINE L1 5664 5736 -432 7062 195 10 16 chr21 6397706 6399259 -28508311 - L1PB4 LINE L1 -512 6346 4807 2315 109 0 0 chr21 6399259 6399562 -28508008 + AluSq SINE Alu 1 303 -10 7062 195 10 16 chr21 6399562 6399878 -28507692 - L1PB4 LINE L1 -2051 4807 4491 1785 159 133 18 chr21 6399878 6400262 -28507308 + MSTA LTR MaLR 1 428 0 9232 140 27 36 chr21 6400264 6401845 -28505725 + MSTA-int LTR MaLR 3 1569 -11 1237 181 107 22 chr21 6401846 6402116 -28505454 + MSTA LTR MaLR 3 295 -133 7276 229 32 9 chr21 6402146 6402781 -28504789 - L1PB4 LINE L1 -3012 3836 3217 369 0 0 0 chr21 6402781 6402822 -28504748 + (TG)n Simple_repeat Simple_repeat 1 41 0 7276 229 32 9 chr21 6402822 6404900 -28502670 - L1PB4 LINE L1 -3631 3217 1060 1870 142 144 21 chr21 6405653 6406034 -28501536 - MSTA LTR MaLR 0 428 1 469 333 54 6 chr21 6406244 6406412 -28501158 - L1PB4 LINE L1 -6399 450 275 23 54 0 0 chr21 6407156 6407193 -28500377 + AT_rich Low_complexity Low_complexity 1 37 0 407 337 37 6 chr21 6408444 6408607 -28498963 + HAL1 LINE L1 1096 1263 -1244 3793 219 14 27 chr21 6408639 6409482 -28498088 + L1MA2 LINE L1 17 848 -6717 11860 158 24 11 chr21 6409457 6412706 -28494864 + L1MA2 LINE L1 1097 4304 -3419 2100 150 0 0 chr21 6412706 6413012 -28494558 + AluSx SINE Alu 3 308 -4 11860 158 24 11 chr21 6413012 6413830 -28493740 + L1MA2 LINE L1 4304 5110 -2613 5215 156 38 30 chr21 6413830 6414893 -28492677 + MER11C LTR ERVK 1 1071 0 11860 158 24 11 chr21 6414893 6417252 -28490318 + L1MA2 LINE L1 5110 7723 0 34 24 0 0 chr21 6417253 6417294 -28490276 + AT_rich Low_complexity Low_complexity 1 41 0 369 333 78 0 chr21 6417329 6417521 -28490049 + HAL1 LINE L1 1340 1546 -961 306 230 62 101 chr21 6417832 6418041 -28489529 + HAL1 LINE L1 1948 2148 -359 194 392 0 0 chr21 6418762 6418836 -28488734 + MIR3 SINE MIR 86 159 -49 2210 120 22 27 chr21 6418871 6419237 -28488333 + THE1B LTR MaLR 1 364 0 1652 289 51 8 chr21 6421298 6421786 -28485784 - MLT1H1 LTR MaLR -2 553 45 1935 124 79 25 chr21 6422050 6422404 -28485166 + THE1C LTR MaLR 1 373 -2 461 261 39 20 chr21 6423430 6423583 -28483987 + MER5B DNA MER1_type 1 156 -22 2318 97 3 3 chr21 6424348 6424659 -28482911 - AluY SINE Alu 0 311 1 635 333 19 26 chr21 6424937 6425246 -28482324 + HERVL LTR ERVL 2284 2590 -3064 256 279 12 23 chr21 6425519 6425605 -28481965 + HERVL LTR ERVL 3776 3860 -1904 269 301 21 32 chr21 6426260 6426353 -28481217 + HERVL LTR ERVL 4859 4950 -535 315 0 0 0 chr21 6426702 6426737 -28480833 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 6427556 6427577 -28479993 + AT_rich Low_complexity Low_complexity 1 21 0 646 281 22 5 chr21 6428164 6428349 -28479221 + MLT1H1 LTR MaLR 25 212 -343 7104 121 17 6 chr21 6430104 6431246 -28476324 + L1MA1 LINE L1 4467 5639 -663 2005 131 147 26 chr21 6431246 6431627 -28475943 - MSTA LTR MaLR 0 428 2 7104 121 17 6 chr21 6431627 6432299 -28475271 + L1MA1 LINE L1 5639 6302 0 1902 102 69 7 chr21 6432325 6432599 -28474971 - AluSq SINE Alu -21 292 2 286 363 84 23 chr21 6433484 6433746 -28473824 + L2 LINE L2 211 488 -2826 190 325 161 49 chr21 6433734 6434162 -28473408 + L2 LINE L2 1865 2340 -974 260 324 0 0 chr21 6435439 6435513 -28472057 - L2 LINE L2 -63 3209 3136 284 30 0 91 chr21 6435544 6435610 -28471960 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 195 303 11 67 chr21 6436061 6436150 -28471420 - L2 LINE L2 -1 3312 3229 514 288 7 0 chr21 6436933 6437086 -28470484 - L1MA10 LINE L1 -11 6323 6170 237 262 66 0 chr21 6437631 6437692 -28469878 - MIR3 SINE MIR -6 202 138 682 281 84 34 chr21 6438980 6439054 -28468516 + L2 LINE L2 2151 2220 -1094 1331 94 133 0 chr21 6439054 6439257 -28468313 + MER30 DNA MER1_type 1 230 0 682 281 84 34 chr21 6439257 6439502 -28468068 + L2 LINE L2 2220 2486 -828 1515 172 20 40 chr21 6441073 6441282 -28466288 + LTR53 LTR ERVL 1 204 -315 1275 205 72 61 chr21 6441282 6441673 -28465897 - MSTD LTR MaLR 0 396 2 1515 172 20 40 chr21 6441673 6441765 -28465805 + LTR53 LTR ERVL 204 296 -223 1433 72 6 6 chr21 6441767 6441947 -28465623 + AluSq SINE Alu 3 182 -131 891 252 69 0 chr21 6441957 6442159 -28465411 + LTR53 LTR ERVL 281 496 -23 200 351 65 45 chr21 6442942 6443096 -28464474 + MIR SINE MIR 62 218 -44 248 330 50 20 chr21 6443141 6443241 -28464329 - L2 LINE L2 -2 3270 3168 237 22 0 67 chr21 6443430 6443475 -28464095 + (TTAA)n Simple_repeat Simple_repeat 1 42 0 1052 109 0 0 chr21 6443475 6443613 -28463957 - AluSg/x SINE Alu -27 283 146 1147 120 16 16 chr21 6443707 6443899 -28463671 + Tigger1 DNA MER2_type 1900 2091 -327 623 206 79 16 chr21 6443899 6444025 -28463545 + FRAM SINE Alu 20 153 -23 1914 175 9 3 chr21 6444025 6444357 -28463213 + Tigger1 DNA MER2_type 2084 2417 -1 651 134 0 55 chr21 6444359 6444486 -28463084 - L1 LINE L1 -1542 4604 4485 535 186 25 103 chr21 6445007 6445211 -28462359 + L1MB7 LINE L1 5989 6176 -8 476 269 5 75 chr21 6445214 6445415 -28462155 + L1MC5 LINE L1 6727 6913 -1048 261 0 0 0 chr21 6445537 6445566 -28462004 + (T)n Simple_repeat Simple_repeat 1 29 0 644 223 23 0 chr21 6445567 6445697 -28461873 - MLT1E LTR MaLR -47 546 414 810 194 12 0 chr21 6445722 6445882 -28461688 + L1M4c LINE L1 1221 1382 -5002 2449 65 13 3 chr21 6445883 6446224 -28461346 + AluY SINE Alu 1 344 0 27 49 0 0 chr21 6446909 6446950 -28460620 + AT_rich Low_complexity Low_complexity 1 41 0 414 39 0 0 chr21 6447757 6447809 -28459761 + (TG)n Simple_repeat Simple_repeat 1 52 0 591 277 25 0 chr21 6448029 6448188 -28459382 + MIR SINE MIR 100 262 0 896 172 22 27 chr21 6448776 6448969 -28458601 - MLT1B LTR MaLR -2 384 173 382 48 0 32 chr21 6448971 6449034 -28458536 + (GA)n Simple_repeat Simple_repeat 2 62 0 572 161 84 71 chr21 6449045 6449200 -28458370 - MLT1B LTR MaLR -204 161 5 612 107 29 0 chr21 6449945 6450048 -28457522 - L1PA4 LINE L1 0 6155 6050 293 219 78 0 chr21 6450957 6451021 -28456549 + MLT1I LTR MaLR 107 175 -234 1091 257 68 25 chr21 6451357 6451816 -28455754 + LTR40a LTR ERVL 19 517 -2 203 61 30 0 chr21 6451853 6451886 -28455684 + (TCTA)n Simple_repeat Simple_repeat 1 34 0 2218 127 0 0 chr21 6453691 6453998 -28453572 + AluSc SINE Alu 1 307 -2 233 82 0 82 chr21 6454565 6454626 -28452944 + LTR66 LTR ERVL 158 213 -397 187 211 14 14 chr21 6454626 6454697 -28452873 + (CATA)n Simple_repeat Simple_repeat 2 72 0 215 188 50 100 chr21 6458086 6458166 -28449404 + MIR SINE MIR 86 161 -101 30 59 0 0 chr21 6459133 6459184 -28448386 + AT_rich Low_complexity Low_complexity 1 51 0 22 35 0 0 chr21 6462102 6462131 -28445439 + AT_rich Low_complexity Low_complexity 1 29 0 2521 40 3 3 chr21 6463019 6463322 -28444248 + AluY SINE Alu 1 303 -8 2132 85 3 33 chr21 6463806 6463827 -28443743 - AluY SINE Alu 0 311 291 181 0 0 0 chr21 6463827 6463847 -28443723 + (TTG)n Simple_repeat Simple_repeat 2 180 0 2132 85 3 33 chr21 6463847 6464130 -28443440 - AluY SINE Alu -20 291 12 2209 156 5 13 chr21 6464187 6464565 -28443005 + THE1C LTR MaLR 1 375 0 839 173 7 27 chr21 6465470 6465620 -28441950 - MER58B DNA MER1_type 0 341 195 382 329 64 30 chr21 6465640 6465874 -28441696 + MLT1L LTR MaLR 22 263 -352 3016 128 17 12 chr21 6467727 6468322 -28439248 - MER4E LTR ERV1 0 779 1 651 265 15 20 chr21 6468324 6468528 -28439042 - MLT1A1 LTR MaLR -76 289 87 3444 208 66 63 chr21 6468535 6468669 -28438901 + MER21A LTR ERV1 30 162 -769 2309 101 3 0 chr21 6468669 6468977 -28438593 + AluSg1 SINE Alu 1 309 0 3444 208 66 63 chr21 6468977 6469735 -28437835 + MER21A LTR ERV1 162 925 -6 500 151 70 0 chr21 6469744 6469830 -28437740 - MLT1A1 LTR MaLR -278 96 5 417 20 0 0 chr21 6469853 6469903 -28437667 + (TG)n Simple_repeat Simple_repeat 1 50 0 1460 247 84 18 chr21 6470159 6470684 -28436886 - MLT1E LTR MaLR -2 591 1 1715 243 7 41 chr21 6470921 6471358 -28436212 - MLT1E2 LTR MaLR 0 626 205 276 264 49 62 chr21 6471334 6471478 -28436092 - MLT1J1 LTR MaLR -372 254 113 482 218 24 24 chr21 6471481 6471605 -28435965 + MER34 LTR ERV1 10 133 -409 436 232 129 79 chr21 6471656 6471897 -28435673 - MLT1J1 LTR MaLR -8 438 186 353 160 223 53 chr21 6472506 6472600 -28434970 - MLT1J1 LTR MaLR -514 110 1 427 226 0 20 chr21 6474165 6474267 -28433303 - L1 LINE L1 -985 5161 5062 44 35 0 0 chr21 6474316 6474374 -28433196 + AT_rich Low_complexity Low_complexity 1 58 0 729 245 88 20 chr21 6474561 6474865 -28432705 - MLT1G LTR MaLR -14 576 223 2388 100 0 0 chr21 6476420 6476731 -28430839 + AluSq SINE Alu 1 311 -2 778 155 171 36 chr21 6476930 6477123 -28430447 + MER20 DNA MER1_type 1 219 0 1479 245 55 36 chr21 6477460 6477954 -28429616 + MLT1D LTR MaLR 3 505 0 468 355 29 0 chr21 6477967 6478139 -28429431 - MIR SINE MIR -67 195 19 6261 82 19 5 chr21 6478197 6479083 -28428487 - L1PA13 LINE L1 0 6163 5265 420 221 64 105 chr21 6479764 6479936 -28427634 - L1ME3A LINE L1 -12 6158 5994 282 245 0 0 chr21 6479965 6480018 -28427552 - L1ME3A LINE L1 -180 5990 5938 1592 182 4 4 chr21 6480018 6480282 -28427288 - MLT1C LTR MaLR 0 467 204 305 47 23 0 chr21 6480282 6480325 -28427245 + (TC)n Simple_repeat Simple_repeat 2 45 0 1039 198 0 14 chr21 6480340 6480547 -28427023 - MLT1C LTR MaLR -263 204 1 715 229 0 0 chr21 6480674 6480805 -28426765 - FLAM_A SINE Alu -1 132 2 430 223 18 9 chr21 6480920 6481032 -28426538 - L1ME3A LINE L1 -394 5776 5664 22 56 0 0 chr21 6481439 6481475 -28426095 + AT_rich Low_complexity Low_complexity 1 36 0 361 195 69 23 chr21 6482417 6482504 -28425066 + MIR SINE MIR 102 192 -70 624 306 50 73 chr21 6482506 6482873 -28424697 + L2 LINE L2 2219 2578 -736 905 241 38 5 chr21 6482873 6483085 -28424485 - MER20 DNA MER1_type 0 219 1 624 306 50 73 chr21 6483085 6483113 -28424457 + L2 LINE L2 2578 2605 -709 597 217 51 0 chr21 6483291 6483429 -28424141 - MLT1G1 LTR MaLR -9 586 442 617 332 39 36 chr21 6483443 6483723 -28423847 - MLT1G1 LTR MaLR -314 281 1 1504 268 85 39 chr21 6483782 6484405 -28423165 - MLT1E1 LTR MaLR 0 654 3 28 48 0 0 chr21 6484526 6484568 -28423002 + AT_rich Low_complexity Low_complexity 1 42 0 332 292 98 70 chr21 6484599 6484996 -28422574 - L1M4 LINE L1 -2375 3771 3364 405 0 0 0 chr21 6485078 6485123 -28422447 + (TG)n Simple_repeat Simple_repeat 2 46 0 2430 77 0 0 chr21 6485176 6485475 -28422095 - AluY SINE Alu -12 299 1 2118 172 42 36 chr21 6485658 6486202 -28421368 + MLT2A2 LTR ERVL 1 554 0 331 288 25 0 chr21 6486206 6486286 -28421284 - MIR SINE MIR -149 113 32 1780 178 37 12 chr21 6486293 6486866 -28420704 - L1M4 LINE L1 -669 6003 5415 1117 259 55 8 chr21 6486868 6487265 -28420305 - L1M4 LINE L1 -2475 4169 3754 895 248 78 27 chr21 6487291 6488702 -28418868 - L1 LINE L1 -1318 5064 1925 433 350 9 28 chr21 6488717 6488934 -28418636 - L1M4 LINE L1 -4522 2122 1910 4572 214 53 47 chr21 6488941 6489055 -28418515 - L1M4 LINE L1 -5192 1350 1238 2784 22 0 3 chr21 6489055 6489373 -28418197 - AluYb8 SINE Alu -1 317 1 4572 214 53 47 chr21 6489373 6490586 -28416984 - L1M4 LINE L1 -5304 1238 16 1838 241 56 76 chr21 6490606 6491212 -28416358 - MLT1E1 LTR MaLR -4 650 57 426 79 0 0 chr21 6491965 6492028 -28415542 + (TA)n Simple_repeat Simple_repeat 1 63 0 214 204 20 20 chr21 6493137 6493186 -28414384 - L2 LINE L2 0 3313 3265 2170 100 7 3 chr21 6493186 6493477 -28414093 + AluSg SINE Alu 9 300 -10 651 319 86 6 chr21 6493812 6494138 -28413432 - L2 LINE L2 -938 2376 2025 29 28 0 0 chr21 6494912 6494948 -28412622 + AT_rich Low_complexity Low_complexity 1 36 0 2469 150 18 23 chr21 6496270 6496704 -28410866 - Tigger2a DNA MER2_type 0 434 3 525 277 61 7 chr21 6497851 6497999 -28409571 + MIR SINE MIR 107 262 0 1691 179 31 0 chr21 6498018 6498308 -28409262 - AluJb SINE Alu -11 301 3 453 273 93 23 chr21 6498687 6498859 -28408711 + MIR SINE MIR 66 249 -13 2481 185 52 61 chr21 6499115 6499257 -28408313 - L1MB8 LINE L1 -17 6161 6019 2269 67 40 0 chr21 6499257 6499556 -28408014 - AluY SINE Alu 0 311 1 2481 185 52 61 chr21 6499556 6500052 -28407518 - L1MB8 LINE L1 -159 6019 5529 760 163 35 0 chr21 6500270 6500411 -28407159 + L1MA9 LINE L1 6167 6312 0 3898 61 2 2 chr21 6502890 6503396 -28404174 - L1PA7 LINE L1 0 6154 5649 1883 191 22 25 chr21 6503526 6503892 -28403678 - MLT1A1 LTR MaLR 0 365 1 338 326 47 8 chr21 6504068 6504197 -28403373 - MLT1K LTR MaLR -302 286 153 26 0 0 0 chr21 6504262 6504288 -28403282 + AT_rich Low_complexity Low_complexity 1 26 0 197 291 97 29 chr21 6505384 6505487 -28402083 + L2 LINE L2 1307 1416 -1898 355 306 113 26 chr21 6505864 6506093 -28401477 + L2 LINE L2 1860 2108 -1206 465 302 8 0 chr21 6506169 6506298 -28401272 + L2 LINE L2 2243 2372 -942 2039 156 58 67 chr21 6506606 6507055 -28400515 - MER65A LTR ERV1 0 445 1 4846 242 84 45 chr21 6507271 6507496 -28400074 + Charlie6 DNA MER1_type 162 377 -3123 2423 92 0 0 chr21 6507496 6507801 -28399769 - AluSx SINE Alu -7 305 1 4846 242 84 45 chr21 6507801 6509341 -28398229 + Charlie6 DNA MER1_type 377 1995 -1505 861 215 5 5 chr21 6509343 6509543 -28398027 - L1MB8 LINE L1 -692 5476 5277 1342 172 0 19 chr21 6509546 6509807 -28397763 + L1MB1 LINE L1 5873 6128 -40 4067 211 88 31 chr21 6509814 6511205 -28396365 + Charlie6 DNA MER1_type 1993 3500 0 2156 107 0 20 chr21 6511280 6511632 -28395938 + AluSg SINE Alu 1 310 0 538 307 59 77 chr21 6511747 6512458 -28395112 + L2 LINE L2 2379 3075 -238 842 158 27 22 chr21 6512497 6512680 -28394890 - L1MA8 LINE L1 -12 6279 6096 2413 130 14 69 chr21 6512689 6512895 -28394675 - L1MA8 LINE L1 -2 6289 6073 378 0 0 0 chr21 6512895 6512937 -28394633 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2232 85 0 0 chr21 6512937 6513220 -28394350 - AluY SINE Alu -28 283 1 2413 130 14 69 chr21 6513220 6513505 -28394065 - L1MA8 LINE L1 -216 6075 5824 442 225 50 115 chr21 6513515 6513715 -28393855 + L2 LINE L2 3109 3295 -18 334 194 14 14 chr21 6513883 6513955 -28393615 + MIR3 SINE MIR 119 190 -18 1760 146 40 63 chr21 6514624 6515021 -28392549 + L1MA9 LINE L1 5923 6310 -2 22 56 0 0 chr21 6515062 6515098 -28392472 + AT_rich Low_complexity Low_complexity 1 36 0 1945 133 3 16 chr21 6515195 6515503 -28392067 + AluSx SINE Alu 1 304 -8 3727 196 56 16 chr21 6517176 6518013 -28389557 - L1MC2 LINE L1 -11 6333 5463 1421 237 68 5 chr21 6518559 6518955 -28388615 + MLT1C LTR MaLR 39 459 -8 23 0 0 0 chr21 6519186 6519209 -28388361 + AT_rich Low_complexity Low_complexity 1 23 0 2419 66 0 3 chr21 6519667 6519971 -28387599 - AluY SINE Alu -8 303 1 286 240 125 10 chr21 6520195 6520291 -28387279 + MLT1A2 LTR MaLR 66 172 -218 937 198 6 11 chr21 6520373 6520550 -28387020 + MLT1A2 LTR MaLR 199 374 0 21 0 0 0 chr21 6521333 6521354 -28386216 + AT_rich Low_complexity Low_complexity 1 21 0 2216 160 20 2 chr21 6522935 6523329 -28384241 - L1 LINE L1 -1972 5593 5193 1047 242 14 0 chr21 6523321 6523602 -28383968 - L1 LINE L1 -2990 4575 4291 1195 130 0 0 chr21 6523604 6523773 -28383797 - AluSg/x SINE Alu -13 297 129 20984 151 35 30 chr21 6523773 6524730 -28382840 - L1 LINE L1 -3267 4298 3347 320 0 25 0 chr21 6524730 6524770 -28382800 + (TTA)n Simple_repeat Simple_repeat 3 43 0 3130 39 3 0 chr21 6524770 6525151 -28382419 - L1PA6 LINE L1 -18 6136 5755 20984 151 35 30 chr21 6525151 6528440 -28379130 - L1 LINE L1 -4217 3348 18 955 275 111 70 chr21 6528440 6529001 -28378569 + L2 LINE L2 2436 3011 -302 294 50 0 0 chr21 6529008 6529048 -28378522 + (CA)n Simple_repeat Simple_repeat 2 41 0 481 278 49 44 chr21 6529060 6529265 -28378305 + L2 LINE L2 3108 3313 0 26 0 0 0 chr21 6530358 6530384 -28377186 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr21 6532907 6532928 -28374642 + AT_rich Low_complexity Low_complexity 1 21 0 222 312 0 0 chr21 6533922 6533999 -28373571 + CT-rich Low_complexity Low_complexity 3 79 0 3774 170 10 10 chr21 6534015 6534476 -28373094 - L1MA4 LINE L1 -11 6991 6528 1987 127 49 35 chr21 6534476 6534845 -28372725 - THE1C LTR MaLR -1 374 1 3774 170 10 10 chr21 6534845 6535089 -28372481 - L1MA4 LINE L1 -473 6529 6286 2283 147 3 3 chr21 6535090 6535465 -28372105 - THE1C LTR MaLR 0 375 1 9571 110 70 33 chr21 6535470 6536988 -28370582 - THE1C-int LTR MaLR -6 1574 1 2377 131 11 8 chr21 6536988 6537362 -28370208 - THE1C LTR MaLR 0 375 1 1950 153 9 15 chr21 6537362 6537980 -28369590 - L1MA4 LINE L1 -713 6289 5673 5879 201 36 6 chr21 6537980 6539559 -28368011 - L1MA4 LINE L1 -3787 3061 1427 521 356 91 82 chr21 6539573 6540047 -28367523 - L1MA4 LINE L1 -5730 1119 569 1637 282 19 44 chr21 6540177 6540719 -28366851 - L1MA4 LINE L1 -6320 529 2 186 71 0 0 chr21 6541181 6541209 -28366361 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 262 183 77 0 chr21 6541621 6541692 -28365878 + MLT1I LTR MaLR 326 450 0 565 259 42 48 chr21 6542129 6542318 -28365252 + MIR SINE MIR 33 220 -42 1901 151 7 0 chr21 6544174 6544465 -28363105 - AluSx SINE Alu -19 293 1 27 29 0 0 chr21 6544530 6544564 -28363006 + AT_rich Low_complexity Low_complexity 1 34 0 2021 157 46 6 chr21 6544801 6545152 -28362418 - MLT1A1 LTR MaLR 0 365 1 182 348 37 55 chr21 6545458 6545622 -28361948 + MIR SINE MIR 53 213 -49 22 23 0 45 chr21 6550132 6550156 -28357414 + AT_rich Low_complexity Low_complexity 1 24 -18 1640 178 54 9 chr21 6550156 6550505 -28357065 - MLT1A1 LTR MaLR 0 365 1 22 23 0 45 chr21 6550505 6550524 -28357046 + AT_rich Low_complexity Low_complexity 24 42 0 339 25 0 0 chr21 6550809 6550849 -28356721 + (TA)n Simple_repeat Simple_repeat 2 41 0 1226 157 0 0 chr21 6550868 6551126 -28356444 - L1MA7 LINE L1 -61 6230 5867 952 215 56 24 chr21 6551150 6551401 -28356169 + MIR SINE MIR 4 262 0 21 0 0 0 chr21 6553239 6553260 -28354310 + AT_rich Low_complexity Low_complexity 1 21 0 2210 141 13 19 chr21 6553892 6554269 -28353301 - THE1C LTR MaLR 0 375 1 220 217 67 17 chr21 6554746 6554806 -28352764 - L2 LINE L2 -10 3303 3241 2286 114 11 8 chr21 6556100 6556452 -28351118 - THE1A LTR MaLR -2 353 1 203 340 0 0 chr21 6557793 6557846 -28349724 + polypurine Low_complexity Low_complexity 2 54 0 591 172 164 0 chr21 6561414 6561536 -28346034 - FRAM SINE Alu -16 160 19 830 101 32 18 chr21 6566451 6566671 -28340899 + (TA)n Simple_repeat Simple_repeat 1 223 0 421 125 38 12 chr21 6566671 6566751 -28340819 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 680 79 76 0 chr21 6566762 6567018 -28340552 + (TA)n Simple_repeat Simple_repeat 1 275 0 326 278 11 0 chr21 6567540 6567630 -28339940 + MIR SINE MIR 1 91 -171 219 304 89 37 chr21 6568004 6568139 -28339431 - MIR SINE MIR -118 144 3 43 35 0 0 chr21 6568292 6568349 -28339221 + AT_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chr21 6568412 6568462 -28339108 + AT_rich Low_complexity Low_complexity 1 50 0 26 88 0 0 chr21 6568779 6568847 -28338723 + AT_rich Low_complexity Low_complexity 1 68 0 262 111 0 69 chr21 6569244 6569349 -28338221 + (TTTA)n Simple_repeat Simple_repeat 1 97 0 29 0 0 0 chr21 6569357 6569386 -28338184 + AT_rich Low_complexity Low_complexity 1 29 0 213 77 6 128 chr21 6569386 6569542 -28338028 + (TTTA)n Simple_repeat Simple_repeat 2 138 0 70 11 0 11 chr21 6569542 6569592 -28337978 + AT_rich Low_complexity Low_complexity 1 51 -36 181 0 0 65 chr21 6569592 6569623 -28337947 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 70 11 0 11 chr21 6569623 6569660 -28337910 + AT_rich Low_complexity Low_complexity 51 87 0 630 93 0 10 chr21 6569718 6569815 -28337755 + L1PA12 LINE L1 6071 6166 -2 21 57 0 0 chr21 6569835 6569870 -28337700 + AT_rich Low_complexity Low_complexity 1 35 0 181 130 65 0 chr21 6572555 6572601 -28334969 + (TCTA)n Simple_repeat Simple_repeat 1 49 0 33 56 0 0 chr21 6575257 6575311 -28332259 + AT_rich Low_complexity Low_complexity 1 54 0 21 0 0 0 chr21 6576339 6576360 -28331210 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 6576516 6576549 -28331021 + AT_rich Low_complexity Low_complexity 1 33 0 201 189 0 19 chr21 6576609 6576662 -28330908 + T-rich Low_complexity Low_complexity 4 55 0 22 35 0 0 chr21 6576763 6576792 -28330778 + AT_rich Low_complexity Low_complexity 1 29 0 995 115 30 12 chr21 6577246 6577411 -28330159 + L1PA11 LINE L1 6007 6174 0 21 0 0 0 chr21 6577483 6577504 -28330066 + AT_rich Low_complexity Low_complexity 1 21 0 33 25 0 0 chr21 6577975 6578015 -28329555 + AT_rich Low_complexity Low_complexity 1 40 0 1737 160 7 3 chr21 6578397 6578684 -28328886 + AluJb SINE Alu 1 288 -24 329 58 19 0 chr21 6578687 6578739 -28328831 + (CAA)n Simple_repeat Simple_repeat 2 54 0 527 29 0 0 chr21 6579170 6579240 -28328330 + L1PA2 LINE L1 6086 6155 0 2048 114 3 10 chr21 6579250 6579547 -28328023 + AluSx SINE Alu 1 295 -17 30 45 0 0 chr21 6579864 6579908 -28327662 + AT_rich Low_complexity Low_complexity 1 44 0 1786 141 21 93 chr21 6580122 6580497 -28327073 - MER7A DNA MER2_type 0 346 1 239 366 24 0 chr21 6580915 6581038 -28326532 - MIR SINE MIR -61 201 76 1853 103 0 0 chr21 6582239 6582491 -28325079 + AluSx SINE Alu 54 305 -7 456 81 0 0 chr21 6582983 6583045 -28324525 + L1P5 LINE L1 5729 5790 -361 410 244 0 0 chr21 6583047 6583137 -28324433 + L1MC4 LINE L1 6614 6703 -1339 207 0 0 0 chr21 6583155 6583178 -28324392 + (CA)n Simple_repeat Simple_repeat 2 24 0 2440 124 0 3 chr21 6583178 6583548 -28324022 + L1PB1 LINE L1 5782 6150 -1 1898 135 68 42 chr21 6586133 6586488 -28321082 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr21 6587660 6587683 -28319887 + AT_rich Low_complexity Low_complexity 1 23 0 43 47 0 0 chr21 6588045 6588109 -28319461 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr21 6588588 6588617 -28318953 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr21 6589452 6589476 -28318094 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 5359 82 23 4 chr21 6589481 6590213 -28317357 - L1PA8A LINE L1 -13 6118 5373 2167 95 0 3 chr21 6590310 6590638 -28316932 + AluSq SINE Alu 3 329 0 855 204 50 6 chr21 6590788 6590969 -28316601 - MER5A DNA MER1_type 0 189 1 378 284 39 0 chr21 6592126 6592228 -28315342 - MIR SINE MIR -156 106 1 2316 77 0 22 chr21 6594619 6594932 -28312638 - AluSx SINE Alu -6 306 1 2161 96 0 10 chr21 6596304 6596606 -28310964 + AluY SINE Alu 1 299 -12 207 0 0 0 chr21 6596791 6596814 -28310756 + (T)n Simple_repeat Simple_repeat 1 23 0 2520 50 0 28 chr21 6597180 6597500 -28310070 - AluY SINE Alu 0 311 1 29 0 0 0 chr21 6597549 6597578 -28309992 + AT_rich Low_complexity Low_complexity 1 29 0 2141 97 16 23 chr21 6598161 6598470 -28309100 + AluSc SINE Alu 1 307 -2 368 277 6 43 chr21 6599336 6599490 -28308080 - MER5B DNA MER1_type -2 176 46 2539 48 0 3 chr21 6599682 6599992 -28307578 + AluY SINE Alu 1 309 -2 21 0 0 0 chr21 6601323 6601344 -28306226 + AT_rich Low_complexity Low_complexity 1 21 0 243 347 21 21 chr21 6602222 6602317 -28305253 + MER5A DNA MER1_type 45 139 -50 1979 106 4 0 chr21 6602620 6602893 -28304677 + AluSq SINE Alu 36 309 -4 21 0 0 0 chr21 6603802 6603823 -28303747 + AT_rich Low_complexity Low_complexity 1 21 0 1145 292 82 40 chr21 6603963 6604592 -28302978 + L2 LINE L2 1990 2693 -621 304 371 17 9 chr21 6605002 6605118 -28302452 + L2 LINE L2 3156 3272 0 2992 179 14 0 chr21 6605793 6606350 -28301220 + L1PB4 LINE L1 5586 6150 -6 2118 88 26 26 chr21 6606395 6606702 -28300868 - AluSx SINE Alu -5 307 1 21 57 0 0 chr21 6606832 6606867 -28300703 + AT_rich Low_complexity Low_complexity 1 35 0 2299 88 3 0 chr21 6607097 6607393 -28300177 + AluSp SINE Alu 1 297 -16 374 304 32 6 chr21 6607680 6607838 -28299732 + L1ME1 LINE L1 5982 6143 -23 780 305 67 46 chr21 6607846 6608368 -28299202 + L1MC4a LINE L1 6344 6876 -932 651 263 59 16 chr21 6608596 6608851 -28298719 + L1MC4 LINE L1 7777 8042 0 317 325 33 33 chr21 6609018 6609169 -28298401 - MIR SINE MIR -98 164 14 2986 168 43 6 chr21 6609768 6610305 -28297265 + MER41D LTR ERV1 1 557 0 602 273 96 15 chr21 6612696 6612894 -28294676 + MIR SINE MIR 49 262 0 2462 56 0 3 chr21 6613737 6614042 -28293528 + AluY SINE Alu 1 304 -7 196 109 22 22 chr21 6614191 6614237 -28293333 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 24 77 0 0 chr21 6614463 6614515 -28293055 + AT_rich Low_complexity Low_complexity 1 52 0 506 263 0 72 chr21 6617596 6617790 -28289780 + MER5A DNA MER1_type 7 186 -3 728 116 20 20 chr21 6618053 6618199 -28289371 + CT-rich Low_complexity Low_complexity 3 148 0 1965 130 30 10 chr21 6618210 6618511 -28289059 - AluSx SINE Alu -5 307 1 24 32 0 0 chr21 6618572 6618603 -28288967 + AT_rich Low_complexity Low_complexity 1 31 0 216 0 0 0 chr21 6620775 6620799 -28286771 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 321 333 18 0 chr21 6621167 6621281 -28286289 + GA-rich Low_complexity Low_complexity 1 116 0 868 244 84 45 chr21 6622325 6622636 -28284934 + Charlie4a DNA MER1_type 4 326 -182 27 49 0 0 chr21 6622644 6622685 -28284885 + AT_rich Low_complexity Low_complexity 1 41 0 584 203 14 132 chr21 6622921 6623050 -28284520 - MER5A DNA MER1_type -2 187 91 2637 23 0 0 chr21 6623050 6623354 -28284216 - AluY SINE Alu -7 304 1 584 203 14 132 chr21 6623354 6623436 -28284134 - MER5A DNA MER1_type -98 91 1 27 29 0 0 chr21 6623907 6623941 -28283629 + AT_rich Low_complexity Low_complexity 1 34 0 261 0 0 0 chr21 6626243 6626272 -28281298 + (CA)n Simple_repeat Simple_repeat 2 30 0 4702 45 12 2 chr21 6626465 6627049 -28280521 - L1PA7 LINE L1 -1 6153 5564 3442 60 0 52 chr21 6627050 6627719 -28279851 + L1PA7 LINE L1 4918 5565 -589 6871 161 12 24 chr21 6627903 6629707 -28277863 + L1MA7 LINE L1 3964 5745 -555 21 57 0 0 chr21 6630322 6630357 -28277213 + AT_rich Low_complexity Low_complexity 1 35 0 1327 176 57 7 chr21 6630924 6631203 -28276367 + L1MA7 LINE L1 5926 6218 -73 226 141 16 16 chr21 6631292 6631356 -28276214 + L1MA7 LINE L1 6216 6279 -12 336 307 61 25 chr21 6632013 6632148 -28275422 + MIR SINE MIR 17 160 -102 2259 95 3 0 chr21 6632148 6632444 -28275126 - AluSq SINE Alu -16 297 1 336 307 61 25 chr21 6632444 6632471 -28275099 + MIR SINE MIR 160 185 -77 807 38 19 0 chr21 6633257 6633362 -28274208 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 6633362 6633384 -28274186 + AT_rich Low_complexity Low_complexity 1 22 0 873 47 0 0 chr21 6633431 6633538 -28274032 + L1PA5 LINE L1 6039 6145 -9 22 0 0 0 chr21 6633538 6633560 -28274010 + AT_rich Low_complexity Low_complexity 1 22 0 898 37 0 0 chr21 6633607 6633714 -28273856 + L1PA5 LINE L1 6039 6145 -9 853 65 0 0 chr21 6633785 6633892 -28273678 + L1PA5 LINE L1 6039 6145 -9 26 0 0 0 chr21 6633892 6633918 -28273652 + AT_rich Low_complexity Low_complexity 1 26 0 192 40 0 0 chr21 6635559 6635584 -28271986 + (TG)n Simple_repeat Simple_repeat 2 26 0 1362 57 0 0 chr21 6635622 6635798 -28271772 + (CATCC)n Simple_repeat Simple_repeat 3 178 0 30 0 0 0 chr21 6636273 6636303 -28271267 + AT_rich Low_complexity Low_complexity 1 30 0 286 313 78 36 chr21 6637005 6637171 -28270399 + MIR SINE MIR 11 183 -79 2396 65 3 3 chr21 6637289 6637595 -28269975 - AluSp SINE Alu -7 306 1 27 29 0 0 chr21 6638101 6638135 -28269435 + AT_rich Low_complexity Low_complexity 1 34 0 2358 68 7 0 chr21 6639207 6639516 -28268054 - AluY SINE Alu 0 311 1 4332 161 11 21 chr21 6640067 6640889 -28266681 + L1MA4 LINE L1 5480 6293 -7 2269 130 28 8 chr21 6641091 6641444 -28266126 - THE1B LTR MaLR -4 360 1 28 0 0 0 chr21 6642463 6642491 -28265079 + AT_rich Low_complexity Low_complexity 1 28 0 252 212 0 0 chr21 6643660 6643726 -28263844 + (TA)n Simple_repeat Simple_repeat 2 67 0 1467 103 0 5 chr21 6645718 6645921 -28261649 + AluSg/x SINE Alu 81 282 -28 25 51 0 0 chr21 6646105 6646144 -28261426 + AT_rich Low_complexity Low_complexity 1 39 0 2183 124 22 3 chr21 6646437 6646793 -28260777 + L1MA3 LINE L1 5943 6305 0 24 0 0 0 chr21 6647580 6647604 -28259966 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr21 6647768 6647798 -28259772 + AT_rich Low_complexity Low_complexity 1 30 0 363 337 130 33 chr21 6647841 6648325 -28259245 + L2 LINE L2 2299 2829 -485 21 0 0 0 chr21 6648553 6648574 -28258996 + AT_rich Low_complexity Low_complexity 1 21 0 2466 47 0 3 chr21 6648657 6648958 -28258612 + AluY SINE Alu 1 300 -11 339 330 17 0 chr21 6649682 6649797 -28257773 + MIR SINE MIR 146 262 0 1003 84 51 6 chr21 6650225 6650409 -28257161 - L1P LINE L1 -743 5403 5226 4795 111 8 1 chr21 6650409 6651126 -28256444 + L1PA13 LINE L1 5440 6162 -1 23 33 0 0 chr21 6651405 6651435 -28256135 + AT_rich Low_complexity Low_complexity 1 30 0 238 352 23 47 chr21 6652465 6652593 -28254977 - MIR SINE MIR -79 183 59 21 0 0 0 chr21 6654404 6654425 -28253145 + AT_rich Low_complexity Low_complexity 1 21 0 796 228 12 0 chr21 6654530 6654701 -28252869 - FAM SINE Alu -2 173 1 729 154 0 0 chr21 6654943 6655060 -28252510 - AluSq/x SINE Alu -196 117 1 348 103 0 0 chr21 6656561 6656619 -28250951 + (GA)n Simple_repeat Simple_repeat 2 59 0 23 0 0 0 chr21 6656945 6656968 -28250602 + AT_rich Low_complexity Low_complexity 1 23 0 2207 162 39 34 chr21 6657911 6658455 -28249115 + MLT2A2 LTR ERVL 1 553 -1 22 0 0 0 chr21 6658530 6658552 -28249018 + AT_rich Low_complexity Low_complexity 1 22 0 1612 194 0 29 chr21 6658921 6659236 -28248334 - AluJo SINE Alu -5 307 2 235 323 0 0 chr21 6660099 6660161 -28247409 - L2 LINE L2 -15 3257 3196 192 152 0 0 chr21 6660177 6660210 -28247360 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 185 362 38 12 chr21 6660252 6660332 -28247238 - MIR SINE MIR -62 146 65 186 189 0 0 chr21 6660575 6660612 -28246958 + GA-rich Low_complexity Low_complexity 3 39 0 21 0 0 0 chr21 6663077 6663098 -28244472 + AT_rich Low_complexity Low_complexity 1 21 0 2522 50 0 0 chr21 6663326 6663629 -28243941 + AluY SINE Alu 1 303 -8 21 36 0 0 chr21 6664235 6664263 -28243307 + AT_rich Low_complexity Low_complexity 1 28 0 248 330 104 0 chr21 6664272 6664378 -28243192 - L3 LINE CR1 -241 1336 1220 1742 157 28 3 chr21 6665110 6665396 -28242174 - AluSx SINE Alu -19 293 1 381 235 0 3 chr21 6665693 6665783 -28241787 + AluJ/FLAM SINE Alu 1 68 -234 414 60 0 60 chr21 6665788 6665855 -28241715 + HERVK14 LTR ERVK 5880 5942 -3 1168 169 15 10 chr21 6665860 6666061 -28241509 + AluJo SINE Alu 93 294 -18 540 309 51 39 chr21 6666703 6666959 -28240611 - MIR SINE MIR -1 261 3 596 305 64 58 chr21 6668239 6668774 -28238796 + L2 LINE L2 2510 3312 -1 1821 169 30 21 chr21 6669231 6669603 -28237967 + THE1C LTR MaLR 1 375 0 183 222 95 32 chr21 6669799 6669862 -28237708 + L2 LINE L2 3200 3266 -6 461 327 0 28 chr21 6670235 6670452 -28237118 + L1 LINE L1 4186 4396 -1750 305 290 0 0 chr21 6671756 6671849 -28235721 + (TCTA)n Simple_repeat Simple_repeat 2 94 0 525 251 42 54 chr21 6672407 6672646 -28234924 + MER106A DNA MER1_type 1 236 0 197 311 44 44 chr21 6673444 6673534 -28234036 + MIR SINE MIR 3 92 -170 21 36 0 0 chr21 6674219 6674247 -28233323 + AT_rich Low_complexity Low_complexity 1 28 0 29 60 0 0 chr21 6675789 6675839 -28231731 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr21 6676798 6676828 -28230742 + AT_rich Low_complexity Low_complexity 1 30 0 2809 184 77 2 chr21 6677809 6678384 -28229186 - L1MB1 LINE L1 -1 6167 5550 1599 205 40 5 chr21 6678385 6678780 -28228790 - L1MB1 LINE L1 -1220 4926 4518 25 31 0 0 chr21 6680502 6680534 -28227036 + AT_rich Low_complexity Low_complexity 1 32 0 217 215 169 0 chr21 6680569 6680634 -28226936 - MIR SINE MIR -4 258 183 21 57 0 0 chr21 6681348 6681383 -28226187 + AT_rich Low_complexity Low_complexity 1 35 0 784 171 22 15 chr21 6683316 6683573 -28223997 + CT-rich Low_complexity Low_complexity 1 258 0 2098 100 30 0 chr21 6683597 6683896 -28223674 - AluSq SINE Alu 0 313 6 26 50 0 0 chr21 6684793 6684833 -28222737 + AT_rich Low_complexity Low_complexity 1 40 0 504 273 201 10 chr21 6685550 6685744 -28221826 - MIR SINE MIR -1 261 31 464 299 32 6 chr21 6686158 6686315 -28221255 + MLT1J2 LTR MaLR 6 166 -284 1036 193 173 24 chr21 6688929 6689224 -28218346 - MER44D DNA MER2_type 0 609 1 49 66 0 0 chr21 6689824 6689915 -28217655 + AT_rich Low_complexity Low_complexity 1 91 0 369 0 0 0 chr21 6689965 6690006 -28217564 + (TG)n Simple_repeat Simple_repeat 2 42 0 35 0 0 0 chr21 6691306 6691341 -28216229 + AT_rich Low_complexity Low_complexity 1 35 0 206 403 40 0 chr21 6691718 6691842 -28215728 - L2 LINE L2 0 3313 3185 2872 3 0 0 chr21 6692058 6692371 -28215199 + AluYb8 SINE Alu 1 313 -5 22 0 0 0 chr21 6694067 6694089 -28213481 + AT_rich Low_complexity Low_complexity 1 22 0 189 204 23 0 chr21 6696672 6696716 -28210854 + L2 LINE L2 3269 3313 0 26 0 0 0 chr21 6697118 6697144 -28210426 + AT_rich Low_complexity Low_complexity 1 26 0 29 0 0 0 chr21 6697188 6697217 -28210353 + AT_rich Low_complexity Low_complexity 1 29 0 340 312 106 26 chr21 6697541 6697730 -28209840 + MIR SINE MIR 3 206 -56 351 0 0 0 chr21 6698034 6698073 -28209497 + (CA)n Simple_repeat Simple_repeat 1 39 0 1095 110 64 0 chr21 6699680 6699853 -28207717 + L1PA13 LINE L1 5980 6163 0 307 350 77 16 chr21 6699947 6700141 -28207429 + MIR SINE MIR 7 212 -50 278 232 11 63 chr21 6700456 6700551 -28207019 + MER46C DNA MER2_type 79 168 -170 300 250 62 0 chr21 6700536 6700632 -28206938 + Tigger4(Zombi) DNA MER2_type 2630 2731 0 34 42 0 0 chr21 6700811 6700859 -28206711 + AT_rich Low_complexity Low_complexity 1 48 0 33 66 0 0 chr21 6702945 6703006 -28204564 + AT_rich Low_complexity Low_complexity 1 61 0 424 253 104 63 chr21 6703442 6703618 -28203952 + MLT1L LTR MaLR 355 543 -72 2167 96 0 3 chr21 6703618 6703909 -28203661 - AluSc SINE Alu -19 290 1 424 253 104 63 chr21 6703909 6703953 -28203617 + MLT1L LTR MaLR 543 584 -31 424 300 15 15 chr21 6704059 6704189 -28203381 - MIR SINE MIR -114 148 19 201 175 0 0 chr21 6704432 6704472 -28203098 + CT-rich Low_complexity Low_complexity 3 42 0 534 31 0 0 chr21 6705463 6705527 -28202043 + (CA)n Simple_repeat Simple_repeat 2 65 0 204 171 0 49 chr21 6705527 6705568 -28202002 - MIR SINE MIR -167 95 57 28 29 0 0 chr21 6705779 6705814 -28201756 + AT_rich Low_complexity Low_complexity 1 35 0 671 153 18 18 chr21 6706925 6707152 -28200418 + GA-rich Low_complexity Low_complexity 1 227 0 1929 156 46 22 chr21 6708646 6709012 -28198558 - THE1C LTR MaLR 0 375 1 9214 131 50 12 chr21 6709012 6710531 -28197039 - THE1C-int LTR MaLR 0 1580 4 1972 132 62 14 chr21 6710531 6710883 -28196687 - THE1C LTR MaLR -3 372 1 216 360 33 20 chr21 6711065 6711215 -28196355 + L3 LINE CR1 1248 1399 -178 417 54 0 0 chr21 6712382 6712438 -28195132 + (TC)n Simple_repeat Simple_repeat 1 56 0 346 294 74 23 chr21 6714178 6714354 -28193216 + MIR SINE MIR 22 201 -61 2427 74 0 0 chr21 6714359 6714658 -28192912 + AluY SINE Alu 1 299 -12 456 67 0 0 chr21 6714658 6714718 -28192852 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 201 283 50 0 chr21 6715311 6715371 -28192199 - L2 LINE L2 -20 3293 3231 1178 238 44 0 chr21 6717362 6717660 -28189910 + L1MD3 LINE L1 7674 7984 -11 5926 179 5 3 chr21 6717690 6719619 -28187951 + L1PA16 LINE L1 4234 6166 0 2263 85 3 0 chr21 6720125 6720419 -28187151 + AluSc SINE Alu 10 304 -5 489 296 63 19 chr21 6720553 6720712 -28186858 + MIR SINE MIR 13 178 -84 348 324 61 37 chr21 6723343 6723834 -28183736 + L1MC/D LINE L1 4713 5215 -931 664 305 40 34 chr21 6723900 6724225 -28183345 - LTR16C LTR ERVL -32 459 133 232 321 96 55 chr21 6724543 6724814 -28182756 + L1MC/D LINE L1 5525 5806 -2002 1069 194 8 57 chr21 6725303 6725550 -28182020 - AluJo SINE Alu 0 312 78 659 259 73 68 chr21 6726875 6727215 -28180355 - HAL1b LINE L1 -747 601 260 677 174 0 7 chr21 6727676 6727814 -28179756 + CT-rich Low_complexity Low_complexity 1 137 0 216 0 0 0 chr21 6730590 6730614 -28176956 + (CTG)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr21 6730808 6730841 -28176729 + AT_rich Low_complexity Low_complexity 1 33 0 798 130 18 27 chr21 6731052 6731275 -28176295 + CT-rich Low_complexity Low_complexity 1 221 0 2023 98 0 44 chr21 6731294 6731590 -28175980 - AluSg1 SINE Alu -22 287 5 1207 161 0 0 chr21 6731597 6731789 -28175781 - AluJo SINE Alu -15 297 106 24 0 0 0 chr21 6731798 6731822 -28175748 + AT_rich Low_complexity Low_complexity 1 24 0 5027 193 26 22 chr21 6732046 6733623 -28173947 - L1MA10 LINE L1 -3 6331 4748 2796 190 28 14 chr21 6733626 6734263 -28173307 + L1MA10 LINE L1 4102 4747 -1399 190 227 0 45 chr21 6735694 6735782 -28171788 + (CATA)n Simple_repeat Simple_repeat 3 86 0 24 0 0 0 chr21 6736586 6736610 -28170960 + AT_rich Low_complexity Low_complexity 1 24 0 2028 182 56 25 chr21 6736795 6737080 -28170490 + MER65C LTR ERV1 3 308 -153 2444 77 0 0 chr21 6737080 6737391 -28170179 - AluY SINE Alu 0 311 1 2028 182 56 25 chr21 6737391 6737550 -28170020 + MER65C LTR ERV1 308 461 0 1959 139 0 7 chr21 6739851 6740152 -28167418 - AluSx SINE Alu -13 299 1 603 292 21 79 chr21 6740363 6740603 -28166967 - MIR SINE MIR -1 261 36 427 330 76 18 chr21 6740619 6740843 -28166727 + MLT2F LTR ERVL 6 242 -421 2457 32 3 29 chr21 6741273 6741582 -28165988 - AluY SINE Alu -10 301 1 428 242 27 7 chr21 6742746 6742895 -28164675 + (TA)n Simple_repeat Simple_repeat 2 153 0 182 182 0 45 chr21 6743789 6743833 -28163737 - L2 LINE L2 -15 3257 3216 567 294 33 28 chr21 6744053 6744233 -28163337 - MIR SINE MIR -52 210 30 8085 99 31 5 chr21 6746111 6747267 -28160303 + THE1A-int LTR MaLR 395 1580 0 2176 135 17 9 chr21 6747267 6747615 -28159955 + THE1A LTR MaLR 1 351 -4 23 54 0 0 chr21 6749416 6749453 -28158117 + AT_rich Low_complexity Low_complexity 1 37 0 1610 209 53 31 chr21 6750233 6750687 -28156883 + MLT1C LTR MaLR 1 464 -3 1532 164 110 7 chr21 6751277 6751558 -28156012 + AluJb SINE Alu 1 310 -2 294 301 20 7 chr21 6752100 6752253 -28155317 + (TA)n Simple_repeat Simple_repeat 2 156 0 11370 30 4 1 chr21 6752970 6754357 -28153213 - L1PA3 LINE L1 -1967 4179 2787 10004 22 0 0 chr21 6754357 6756354 -28151216 + L1PA3 LINE L1 4191 6153 -2 11370 30 4 1 chr21 6756354 6756379 -28151191 - L1P LINE L1 -3359 2787 2764 21 36 0 0 chr21 6757087 6757115 -28150455 + AT_rich Low_complexity Low_complexity 1 28 0 188 289 0 0 chr21 6757163 6757208 -28150362 - MIR SINE MIR -129 133 89 2595 30 3 0 chr21 6757959 6758261 -28149309 + AluY SINE Alu 1 303 -8 2046 100 44 0 chr21 6758878 6759189 -28148381 + AluSq SINE Alu 2 324 0 2275 103 0 7 chr21 6759193 6759503 -28148067 + AluSg SINE Alu 3 310 0 1976 130 0 0 chr21 6759528 6759857 -28147713 - AluSx SINE Alu 0 329 1 22 35 0 0 chr21 6760052 6760081 -28147489 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr21 6760346 6760372 -28147198 + AT_rich Low_complexity Low_complexity 1 26 0 320 333 47 30 chr21 6761060 6761399 -28146171 + L1PA12 LINE L1 11 355 -7226 3174 104 0 2 chr21 6762061 6762513 -28145057 + L1PA7 LINE L1 5704 6154 0 2247 161 25 23 chr21 6762513 6762814 -28144756 - L1MA6 LINE L1 -90 6210 5906 359 110 11 132 chr21 6762814 6762905 -28144665 + MADE1 DNA Mariner 1 80 0 2247 161 25 23 chr21 6762905 6763039 -28144531 - L1MA6 LINE L1 -394 5906 5774 415 142 35 55 chr21 6763059 6763073 -28144497 - L1P5 LINE L1 -362 5794 5781 1731 150 88 0 chr21 6763073 6763347 -28144223 - AluSx SINE Alu -14 298 1 415 142 35 55 chr21 6763347 6763432 -28144138 - L1P5 LINE L1 -375 5781 5702 7755 171 24 24 chr21 6763428 6765031 -28142539 + L1M2 LINE L1 3740 5340 -960 2088 125 14 0 chr21 6765031 6765326 -28142244 + AluSg SINE Alu 1 299 -11 7755 171 24 24 chr21 6765326 6765375 -28142195 + L1M2 LINE L1 5340 5387 -913 1840 164 40 30 chr21 6765375 6765746 -28141824 + THE1C LTR MaLR 1 375 0 7755 171 24 24 chr21 6765746 6766044 -28141526 + L1M2 LINE L1 5387 5708 -592 417 382 24 20 chr21 6766180 6766434 -28141136 + MIR SINE MIR 5 259 -3 357 24 0 0 chr21 6767726 6767768 -28139802 + (CA)n Simple_repeat Simple_repeat 2 43 0 239 191 12 60 chr21 6769740 6769824 -28137746 + (CATG)n Simple_repeat Simple_repeat 4 83 0 1364 170 4 30 chr21 6770249 6770514 -28137056 + AluJb SINE Alu 1 258 -54 1573 175 12 6 chr21 6770634 6770954 -28136616 - L1MA10 LINE L1 -1 6333 6012 395 61 0 0 chr21 6771211 6771260 -28136310 - MLT2D LTR ERVL 0 414 366 458 237 130 38 chr21 6771296 6771427 -28136143 - MLT2D LTR ERVL -41 373 231 2290 170 20 0 chr21 6771454 6771860 -28135710 + L1MB1 LINE L1 5579 5992 -197 2389 208 47 36 chr21 6772240 6772788 -28134782 - MLT2B3 LTR ERVL 0 554 1 2535 102 39 6 chr21 6772793 6773156 -28134414 + THE1C LTR MaLR 1 375 0 508 283 78 29 chr21 6774851 6775095 -28132475 + MIR SINE MIR 6 261 -1 630 267 101 68 chr21 6776768 6777136 -28130434 - L1M4 LINE L1 -985 5161 4807 2113 112 0 0 chr21 6777136 6777421 -28130149 - AluSx SINE Alu -7 305 21 630 267 101 68 chr21 6777421 6777941 -28129629 - L1M4 LINE L1 -1339 4807 4243 415 301 68 6 chr21 6777988 6778164 -28129406 - L1M4 LINE L1 -1961 4185 3999 1638 192 62 30 chr21 6778353 6778754 -28128816 - MLT2D LTR ERVL 0 414 1 2793 164 33 4 chr21 6778838 6779321 -28128249 + LOR1a LTR ERV1 1 497 0 22 0 0 0 chr21 6780156 6780178 -28127392 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr21 6780418 6780438 -28127132 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1960 67 4 11 chr21 6780622 6780889 -28126681 + L1PA7 LINE L1 1687 1951 -4195 22421 84 5 10 chr21 6780931 6781760 -28125810 + L1PA7 LINE L1 2132 2964 -3197 2373 79 3 0 chr21 6781760 6782065 -28125505 + AluY SINE Alu 1 306 -5 22421 84 5 10 chr21 6782065 6785293 -28122277 + L1PA7 LINE L1 2964 6161 0 21 0 0 0 chr21 6787317 6787338 -28120232 + AT_rich Low_complexity Low_complexity 1 21 0 273 196 0 0 chr21 6790323 6790379 -28117191 + (TA)n Simple_repeat Simple_repeat 1 56 0 314 272 16 8 chr21 6791967 6792092 -28115478 + (TA)n Simple_repeat Simple_repeat 1 126 0 2174 119 3 0 chr21 6792163 6792457 -28115113 - AluSq SINE Alu -18 295 1 1642 148 0 8 chr21 6793208 6793465 -28114105 + AluJb SINE Alu 34 288 -24 529 267 48 36 chr21 6794969 6795134 -28112436 + MER5A DNA MER1_type 23 189 0 277 152 0 102 chr21 6795355 6795414 -28112156 - MLT1K LTR MaLR -16 572 520 1159 228 55 7 chr21 6796239 6796546 -28111024 - L1MD3 LINE L1 -2 7993 7672 822 239 27 40 chr21 6796558 6796780 -28110790 - L1MD3 LINE L1 -382 7613 7395 995 179 87 5 chr21 6796799 6797017 -28110553 - MER46A DNA MER2_type 0 236 1 218 180 0 40 chr21 6797116 6797166 -28110404 + (CATA)n Simple_repeat Simple_repeat 2 49 0 5146 54 3 1 chr21 6797401 6798054 -28109516 + L1PA7 LINE L1 5287 5940 -214 195 409 15 8 chr21 6798176 6798308 -28109262 - L3 LINE CR1 -416 1161 1029 24 0 0 0 chr21 6800036 6800060 -28107510 + AT_rich Low_complexity Low_complexity 1 24 0 1177 148 19 0 chr21 6800230 6800446 -28107124 + L1MA4A LINE L1 6077 6296 -7 26 0 0 0 chr21 6800458 6800484 -28107086 + AT_rich Low_complexity Low_complexity 1 26 0 212 175 63 0 chr21 6800681 6800744 -28106826 + (CTTAT)n Simple_repeat Simple_repeat 3 69 0 981 247 49 47 chr21 6801600 6802009 -28105561 - L1ME3A LINE L1 -1 6169 5760 204 40 0 0 chr21 6802400 6802425 -28105145 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 700 310 66 36 chr21 6802480 6802812 -28104758 - L1ME3A LINE L1 -1181 4965 4624 618 287 50 19 chr21 6803104 6803362 -28104208 - L1ME3A LINE L1 -1910 4236 3971 2342 124 22 0 chr21 6803582 6803938 -28103632 - THE1B LTR MaLR 0 364 1 325 272 103 22 chr21 6804264 6804427 -28103143 - MIR SINE MIR -59 203 24 201 167 0 0 chr21 6804614 6804650 -28102920 + A-rich Low_complexity Low_complexity 6 41 0 185 316 74 63 chr21 6804879 6805069 -28102501 + L2 LINE L2 530 721 -2593 524 341 35 48 chr21 6805828 6806375 -28101195 - L2 LINE L2 -2 3311 2776 2263 301 129 21 chr21 6806352 6807303 -28100267 - L2 LINE L2 -1163 2151 1098 2248 135 26 0 chr21 6807303 6807650 -28099920 - THE1B LTR MaLR -8 356 1 1818 158 21 24 chr21 6807787 6808123 -28099447 - MER1B DNA MER1_type -1 336 2 495 219 8 55 chr21 6809148 6809276 -28098294 - L2 LINE L2 0 3313 3192 23 78 0 0 chr21 6809703 6809754 -28097816 + AT_rich Low_complexity Low_complexity 1 51 0 886 279 56 31 chr21 6809800 6810155 -28097415 - MER104 DNA MER2_type -1527 368 5 27 29 0 0 chr21 6811002 6811036 -28096534 + AT_rich Low_complexity Low_complexity 1 34 0 1066 35 0 21 chr21 6811823 6811965 -28095605 + L1PA5 LINE L1 6016 6154 0 2424 53 13 0 chr21 6812121 6812421 -28095149 + AluY SINE Alu 1 304 -7 647 146 0 0 chr21 6812524 6812620 -28094950 + FLAM_C SINE Alu 26 121 -22 180 338 29 0 chr21 6812638 6812706 -28094864 - MIR SINE MIR -109 153 84 22 0 0 0 chr21 6813874 6813896 -28093674 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr21 6815251 6815285 -28092285 + (GA)n Simple_repeat Simple_repeat 1 34 0 445 286 142 31 chr21 6815355 6815783 -28091787 + MLT1D LTR MaLR 2 390 0 1125 200 47 59 chr21 6815958 6816397 -28091173 - MLT1B LTR MaLR -7 383 1 30 27 0 0 chr21 6817486 6817523 -28090047 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr21 6817954 6817990 -28089580 + AT_rich Low_complexity Low_complexity 1 36 0 10628 90 8 1 chr21 6820274 6822561 -28085009 + L1PA7 LINE L1 3857 6143 -11 419 35 18 0 chr21 6822562 6822619 -28084951 + (TA)n Simple_repeat Simple_repeat 2 59 0 21 36 0 0 chr21 6823010 6823038 -28084532 + AT_rich Low_complexity Low_complexity 1 28 0 5661 163 22 23 chr21 6823237 6825216 -28082354 - L1MA6 LINE L1 -9 6291 4316 316 92 71 20 chr21 6825664 6825762 -28081808 + (TATAA)n Simple_repeat Simple_repeat 5 107 0 266 318 47 37 chr21 6826450 6826712 -28080858 + L3 LINE CR1 744 1050 -527 275 324 0 99 chr21 6826982 6827124 -28080446 - L2 LINE L2 -8 3305 3178 1743 141 76 25 chr21 6827260 6827615 -28079955 + THE1C LTR MaLR 1 373 -2 4822 221 32 6 chr21 6827622 6828662 -28078908 + THE1C-int LTR MaLR 5 1071 -580 1597 130 24 0 chr21 6828768 6829022 -28078548 + THE1C-int LTR MaLR 1004 1263 -317 28 48 0 0 chr21 6829363 6829405 -28078165 + AT_rich Low_complexity Low_complexity 1 42 0 1991 130 0 3 chr21 6830432 6830765 -28076805 + AluSx SINE Alu 1 332 0 252 0 0 0 chr21 6831722 6831750 -28075820 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 1406 78 12 121 chr21 6833051 6833308 -28074262 - MER30 DNA MER1_type 0 230 2 1535 207 3 19 chr21 6836699 6837008 -28070562 + AluJo SINE Alu 6 309 -3 207 0 0 0 chr21 6837034 6837057 -28070513 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 57 0 0 chr21 6841554 6841589 -28065981 + AT_rich Low_complexity Low_complexity 1 35 0 213 39 0 0 chr21 6843985 6844011 -28063559 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 228 111 0 0 chr21 6844031 6844067 -28063503 + (TC)n Simple_repeat Simple_repeat 2 37 0 739 237 19 0 chr21 6844200 6844415 -28063155 - L1MC3 LINE L1 -8 7777 7559 2889 211 55 2 chr21 6844427 6845076 -28062494 - L1MC3 LINE L1 -265 7520 6852 543 233 105 23 chr21 6845105 6845277 -28062293 + MER5A DNA MER1_type 4 189 0 1785 98 28 47 chr21 6845325 6845370 -28062200 - L1MA5 LINE L1 -10 6290 6246 2145 111 7 0 chr21 6845370 6845667 -28061903 - AluSx SINE Alu -13 299 1 1785 98 28 47 chr21 6845667 6845938 -28061632 - L1MA5 LINE L1 -54 6246 5980 336 102 0 0 chr21 6846411 6846460 -28061110 + (TG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr21 6846713 6846734 -28060836 + AT_rich Low_complexity Low_complexity 1 21 0 195 139 0 0 chr21 6848185 6848221 -28059349 + (CA)n Simple_repeat Simple_repeat 1 36 0 30 45 0 0 chr21 6848252 6848296 -28059274 + AT_rich Low_complexity Low_complexity 1 44 0 524 121 11 22 chr21 6848923 6849014 -28058556 + L1MA4 LINE L1 5569 5658 -642 2283 98 0 3 chr21 6849052 6849347 -28058223 + AluSq SINE Alu 4 297 -16 2904 188 6 43 chr21 6849356 6850006 -28057564 + L1MA4 LINE L1 5675 6300 0 438 323 49 18 chr21 6850355 6850433 -28057137 + MIR SINE MIR 3 77 -185 3418 184 50 13 chr21 6850433 6851129 -28056441 + MER72 LTR ERV1 1 722 0 438 323 49 18 chr21 6851129 6851276 -28056294 + MIR SINE MIR 77 235 -27 25 0 0 0 chr21 6852262 6852287 -28055283 + AT_rich Low_complexity Low_complexity 1 25 0 1640 196 10 16 chr21 6852358 6852669 -28054901 - AluJb SINE Alu -1 311 3 23 54 0 0 chr21 6852937 6852974 -28054596 + AT_rich Low_complexity Low_complexity 1 37 0 236 292 154 46 chr21 6853855 6853985 -28053585 + L2 LINE L2 2564 2707 -607 214 386 28 34 chr21 6854118 6854294 -28053276 + L2 LINE L2 2918 3092 -221 23 33 0 0 chr21 6854343 6854373 -28053197 + AT_rich Low_complexity Low_complexity 1 30 0 37 0 0 0 chr21 6854855 6854892 -28052678 + AT_rich Low_complexity Low_complexity 1 37 0 563 64 0 0 chr21 6855487 6855565 -28052005 - AluJ/FRAM SINE Alu -11 301 224 315 273 45 105 chr21 6855667 6855942 -28051628 + MLT1J1 LTR MaLR 9 271 -175 842 199 0 13 chr21 6857502 6857658 -28049912 + FRAM SINE Alu 1 153 -23 576 307 73 23 chr21 6858109 6858451 -28049119 - L1ME3A LINE L1 -8 6162 5804 386 264 38 9 chr21 6858456 6858562 -28049008 - L1ME3A LINE L1 -406 5756 5648 423 366 55 18 chr21 6858720 6858993 -28048577 - L1MEc LINE L1 -4647 1960 1678 397 334 62 23 chr21 6859056 6859364 -28048206 - L1MEc LINE L1 -4929 1497 1178 2050 148 83 42 chr21 6861169 6861603 -28045967 + LTR47A LTR ERVL 1 452 0 219 273 182 0 chr21 6861777 6861854 -28045716 + L2 LINE L2 2152 2242 -1072 2793 177 9 45 chr21 6862213 6862789 -28044781 - MER41D LTR ERV1 0 557 3 193 352 82 21 chr21 6863013 6863246 -28044324 - L2 LINE L2 -1124 2190 1944 258 241 0 23 chr21 6866495 6866582 -28040988 + (TTAAA)n Simple_repeat Simple_repeat 1 85 0 210 37 0 0 chr21 6867796 6867823 -28039747 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2271 46 42 3 chr21 6868707 6868991 -28038579 + AluY SINE Alu 11 305 -6 1026 262 57 75 chr21 6870230 6870760 -28036810 - MLT2B1 LTR ERVL 0 520 1 1603 212 39 11 chr21 6871606 6871955 -28035615 - MLT1A1 LTR MaLR 0 365 5 2499 261 33 33 chr21 6872063 6872880 -28034690 - L1ME1 LINE L1 -41 6125 5309 2367 227 84 57 chr21 6872877 6873797 -28033773 + L1M4 LINE L1 3923 4867 -1279 5903 126 16 3 chr21 6873801 6874739 -28032831 - L1PA8A LINE L1 -1095 5051 4102 6275 89 9 3 chr21 6874740 6875775 -28031795 + L1PA8A LINE L1 5059 6104 -27 355 291 25 77 chr21 6877007 6877203 -28030367 - MLT1J LTR MaLR -205 306 121 1697 186 0 14 chr21 6878275 6878565 -28029005 + AluJb SINE Alu 1 286 -26 26 30 0 0 chr21 6878854 6878887 -28028683 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 6878924 6878983 -28028587 + MIR SINE MIR 64 123 -139 365 141 64 0 chr21 6879108 6879186 -28028384 - LTR50 LTR ERVL -2 793 711 2244 105 8 45 chr21 6879223 6879575 -28027995 - SVA Other Other -191 1195 857 59093 40 0 1 chr21 6879575 6886566 -28021004 - HERVK LTR ERVK -95 7148 162 8101 55 1 0 chr21 6886566 6887531 -28020039 - LTR5 LTR ERVK -3 966 1 26 30 0 0 chr21 6887612 6887645 -28019925 + AT_rich Low_complexity Low_complexity 1 33 0 209 288 17 0 chr21 6887682 6887741 -28019829 + MIR SINE MIR 64 123 -139 365 235 72 47 chr21 6887866 6888090 -28019480 - LTR50 LTR ERVL -2 793 297 440 195 203 50 chr21 6888136 6888377 -28019193 - LTR50 LTR ERVL -387 408 131 2120 111 16 13 chr21 6888531 6888838 -28018732 - AluSg SINE Alu -2 308 1 183 42 0 0 chr21 6888873 6888897 -28018673 + (TTCC)n Simple_repeat Simple_repeat 3 26 0 302 80 20 0 chr21 6890057 6890107 -28017463 + (GA)n Simple_repeat Simple_repeat 2 52 0 282 206 0 0 chr21 6890103 6890171 -28017399 + GA-rich Low_complexity Low_complexity 2 69 0 3348 117 2 34 chr21 6890523 6891060 -28016510 - L1PB2 LINE L1 -2 6149 5630 548 192 0 8 chr21 6891060 6891190 -28016380 + L1 LINE L1 5180 5308 -838 7637 196 16 21 chr21 6891182 6893072 -28014498 - L1PBb LINE L1 -2105 4098 2173 2116 111 3 3 chr21 6893072 6893370 -28014200 - AluY SINE Alu -13 298 1 7637 196 16 21 chr21 6893370 6895219 -28012351 - L1PBb LINE L1 -4030 2173 317 505 196 0 0 chr21 6895878 6895970 -28011600 - L1PBb LINE L1 -5421 783 692 243 0 0 0 chr21 6895970 6895997 -28011573 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 345 284 33 8 chr21 6896162 6896353 -28011217 + LTR16C LTR ERVL 97 329 -162 447 342 32 0 chr21 6897337 6897527 -28010043 + LTR16C LTR ERVL 97 292 -199 1157 312 44 48 chr21 6900573 6901076 -28006494 + MER45C DNA AcHobo 3 503 -450 587 148 0 0 chr21 6903106 6903194 -28004376 + AluSp SINE Alu 132 219 -94 2377 41 0 7 chr21 6904125 6904417 -28003153 - AluY SINE Alu -21 290 1 273 119 0 0 chr21 6906384 6906426 -28001144 + (A)n Simple_repeat Simple_repeat 1 42 0 1945 311 81 59 chr21 6907739 6908985 -27998585 + L2 LINE L2 338 1610 -1704 218 325 88 18 chr21 6910742 6910856 -27996714 + L3 LINE CR1 382 503 -1074 25 0 0 0 chr21 6911064 6911089 -27996481 + AT_rich Low_complexity Low_complexity 1 25 0 854 62 0 9 chr21 6911541 6911654 -27995916 - L1PA7 LINE L1 -5 6149 6038 1050 312 8 3 chr21 6912914 6913267 -27994303 - HAL1 LINE L1 -584 1923 1569 216 191 0 0 chr21 6913517 6913559 -27994011 + T-rich Low_complexity Low_complexity 1 42 0 587 238 48 34 chr21 6913823 6914092 -27993478 - HAL1 LINE L1 -1414 1093 821 22 56 0 0 chr21 6914306 6914342 -27993228 + AT_rich Low_complexity Low_complexity 1 36 0 621 327 124 39 chr21 6914363 6914871 -27992699 - L1PBb LINE L1 -1945 619 69 4277 45 33 0 chr21 6914881 6915420 -27992150 + L1PA5 LINE L1 5598 6154 0 1571 133 0 0 chr21 6916289 6916514 -27991056 + AluSx SINE Alu 1 225 -87 624 120 0 56 chr21 6916514 6916622 -27990948 + AluSg/x SINE Alu 191 292 -17 198 0 0 0 chr21 6916710 6916732 -27990838 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6436 67 8 0 chr21 6916732 6917940 -27989630 - L1PA7 LINE L1 -18 6136 4903 208 158 35 35 chr21 6918068 6918125 -27989445 + CT-rich Low_complexity Low_complexity 4 60 0 21 36 0 0 chr21 6918702 6918730 -27988840 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 6919263 6919291 -27988279 + AT_rich Low_complexity Low_complexity 1 28 0 1434 193 10 53 chr21 6921102 6921403 -27986167 - AluJo SINE Alu -22 290 3 225 132 15 29 chr21 6922095 6922163 -27985407 + (TTA)n Simple_repeat Simple_repeat 1 67 0 711 279 52 28 chr21 6922202 6922453 -27985117 - MIR SINE MIR -2 260 4 180 125 0 0 chr21 6922694 6922726 -27984844 + (CTTTG)n Simple_repeat Simple_repeat 3 34 0 1271 215 12 80 chr21 6923388 6923788 -27983782 + MLT1A2 LTR MaLR 1 373 -1 22 0 0 0 chr21 6924393 6924415 -27983155 + AT_rich Low_complexity Low_complexity 1 22 0 31 88 0 0 chr21 6925047 6925127 -27982443 + AT_rich Low_complexity Low_complexity 1 80 0 261 167 0 0 chr21 6927361 6927415 -27980155 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 0 0 0 chr21 6927642 6927663 -27979907 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 6927792 6927830 -27979740 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr21 6928558 6928590 -27978980 + AT_rich Low_complexity Low_complexity 1 32 0 244 387 66 15 chr21 6928731 6928868 -27978702 + L2 LINE L2 3129 3272 0 699 204 0 7 chr21 6929554 6929691 -27977879 + MLT1A1 LTR MaLR 13 148 -217 207 98 49 24 chr21 6929814 6929855 -27977715 + A-rich Low_complexity Low_complexity 6 47 0 1306 201 24 54 chr21 6930339 6930588 -27976982 - MSTD LTR MaLR 0 396 156 1616 123 0 0 chr21 6930588 6930816 -27976754 + AluSg/x SINE Alu 83 310 0 1306 201 24 54 chr21 6930816 6930864 -27976706 - MSTD LTR MaLR -240 156 108 704 368 20 0 chr21 6931070 6931372 -27976198 + MLT1I LTR MaLR 92 399 -10 342 275 13 87 chr21 6931374 6931418 -27976152 + MLT2F LTR ERVL 1 47 -616 369 0 0 0 chr21 6931418 6931459 -27976111 + (CA)n Simple_repeat Simple_repeat 2 42 0 1621 194 0 0 chr21 6931461 6931749 -27975821 - AluJb SINE Alu -24 288 1 342 275 13 87 chr21 6931749 6931850 -27975720 + MLT2F LTR ERVL 48 138 -525 278 274 17 26 chr21 6932044 6932161 -27975409 + MLT2F LTR ERVL 546 661 -2 22 0 0 0 chr21 6934699 6934721 -27972849 + AT_rich Low_complexity Low_complexity 1 22 0 254 266 77 70 chr21 6937920 6938232 -27969338 + HAL1 LINE L1 1033 1346 -1161 21 0 0 0 chr21 6938234 6938255 -27969315 + AT_rich Low_complexity Low_complexity 1 21 0 1584 215 24 53 chr21 6939858 6940313 -27967257 - LTR47B LTR ERVL -1 442 1 213 246 0 64 chr21 6941333 6941443 -27966127 + A-rich Low_complexity Low_complexity 3 105 0 1092 311 29 23 chr21 6941875 6942261 -27965309 - LTR16C LTR ERVL 0 491 104 351 340 43 21 chr21 6942823 6943102 -27964468 - L1ME LINE L1 -582 6002 5718 26 64 0 0 chr21 6943106 6943153 -27964417 + AT_rich Low_complexity Low_complexity 1 47 0 218 200 0 0 chr21 6943794 6943844 -27963726 + T-rich Low_complexity Low_complexity 1 50 0 1565 37 0 0 chr21 6943851 6944042 -27963528 - L1PA3 LINE L1 0 6155 5965 30 45 0 0 chr21 6944096 6944140 -27963430 + AT_rich Low_complexity Low_complexity 1 44 0 2062 255 54 45 chr21 6944913 6947119 -27960451 - L1MCb LINE L1 -3212 3352 822 1923 168 60 3 chr21 6947119 6947500 -27960070 + MER57A LTR ERV1 1 403 0 2062 255 54 45 chr21 6947500 6948200 -27959370 - L1MCb LINE L1 -5742 822 130 271 306 9 18 chr21 6948216 6948327 -27959243 - L1MCb LINE L1 -6291 273 164 198 0 0 0 chr21 6948373 6948395 -27959175 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 23 54 0 0 chr21 6949691 6949728 -27957842 + AT_rich Low_complexity Low_complexity 1 37 0 350 284 88 100 chr21 6950110 6950600 -27956970 - MLT1H1 LTR MaLR -12 543 60 255 31 0 0 chr21 6950739 6950771 -27956799 + (TG)n Simple_repeat Simple_repeat 2 33 0 26 50 0 0 chr21 6951162 6951202 -27956368 + AT_rich Low_complexity Low_complexity 1 40 0 27 0 0 0 chr21 6951741 6951768 -27955802 + AT_rich Low_complexity Low_complexity 1 27 0 738 235 20 6 chr21 6951828 6953011 -27954559 + L1PA14 LINE L1 1564 2820 -3326 1957 154 18 6 chr21 6953016 6953348 -27954222 + THE1C LTR MaLR 3 338 -37 11813 184 30 0 chr21 6953358 6953705 -27953865 + L1PA14 LINE L1 2815 3150 -3011 438 20 0 0 chr21 6953705 6953756 -27953814 + (CA)n Simple_repeat Simple_repeat 2 52 0 11813 184 30 0 chr21 6953756 6956694 -27950876 + L1PA14 LINE L1 3150 6148 -13 21 0 0 0 chr21 6956695 6956716 -27950854 + AT_rich Low_complexity Low_complexity 1 21 0 381 295 8 8 chr21 6956824 6956953 -27950617 - L1ME3A LINE L1 -207 5963 5835 218 81 27 0 chr21 6956998 6957035 -27950535 + (CA)n Simple_repeat Simple_repeat 1 38 0 225 250 0 0 chr21 6957107 6957167 -27950403 + GA-rich Low_complexity Low_complexity 1 60 0 552 296 49 33 chr21 6957174 6957542 -27950028 - L1ME3A LINE L1 -535 5629 5256 522 376 35 3 chr21 6957679 6958022 -27949548 - L1ME3A LINE L1 -1059 5087 4734 28 29 0 0 chr21 6958372 6958407 -27949163 + AT_rich Low_complexity Low_complexity 1 35 0 1137 332 42 15 chr21 6959327 6959975 -27947595 - L1ME3A LINE L1 -2923 3223 2559 1718 269 60 40 chr21 6960058 6960310 -27947260 - L1ME1 LINE L1 -5 6161 5916 2175 203 5 7 chr21 6960310 6960728 -27946842 - MER47B DNA MER2_type -1 417 1 1718 269 60 40 chr21 6960728 6961126 -27946444 - L1ME1 LINE L1 -250 5916 5498 252 323 82 32 chr21 6962027 6962185 -27945385 + MIR SINE MIR 13 178 -84 572 266 87 60 chr21 6962453 6962822 -27944748 + MER34 LTR ERV1 161 539 -3 707 173 154 0 chr21 6963081 6963237 -27944333 - MLT1D LTR MaLR 0 505 326 2013 130 3 9 chr21 6963269 6963584 -27943986 - MER4A LTR ERV1 -2 662 350 788 88 9 0 chr21 6963614 6963727 -27943843 - MER4A LTR ERV1 -306 358 245 299 125 0 0 chr21 6963733 6963781 -27943789 - MER4A LTR ERV1 -616 48 1 452 218 62 87 chr21 6963782 6964032 -27943538 - MLT1D LTR MaLR -198 269 19 2115 105 7 0 chr21 6965239 6965525 -27942045 - AluSg SINE Alu -11 299 12 535 14 14 14 chr21 6966394 6966467 -27941103 + (TCTA)n Simple_repeat Simple_repeat 3 75 0 22 0 0 0 chr21 6966537 6966559 -27941011 + AT_rich Low_complexity Low_complexity 1 22 0 384 252 94 31 chr21 6967031 6967190 -27940380 - MIR SINE MIR -8 254 86 995 243 14 0 chr21 6968030 6968252 -27939318 + MER58B DNA MER1_type 116 340 -1 841 241 0 0 chr21 6968634 6968800 -27938770 + FRAM SINE Alu 1 166 0 21 104 0 0 chr21 6969766 6969843 -27937727 + AT_rich Low_complexity Low_complexity 1 77 0 972 201 50 39 chr21 6970074 6970203 -27937367 + MSTD LTR MaLR 23 149 -247 2067 131 3 0 chr21 6970203 6970508 -27937062 + AluSx SINE Alu 1 306 -6 972 201 50 39 chr21 6970508 6970705 -27936865 + MSTD LTR MaLR 149 396 0 266 325 50 25 chr21 6971636 6971796 -27935774 - MIR SINE MIR -12 250 87 349 340 62 72 chr21 6972095 6972245 -27935325 + L3 LINE CR1 970 1120 -457 2155 114 0 19 chr21 6972245 6972560 -27935010 + AluSg SINE Alu 1 309 -1 349 340 62 72 chr21 6972560 6972782 -27934788 + L3 LINE CR1 1120 1338 -239 26 30 0 0 chr21 6973510 6973543 -27934027 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr21 6973862 6973883 -27933687 + AT_rich Low_complexity Low_complexity 1 21 0 761 148 35 9 chr21 6974702 6974862 -27932708 - L1PA16 LINE L1 -439 5726 5555 1770 169 73 5 chr21 6974849 6975253 -27932317 + L1PA16 LINE L1 5700 6166 0 21 0 0 0 chr21 6975287 6975308 -27932262 + AT_rich Low_complexity Low_complexity 1 21 0 2432 81 0 3 chr21 6975308 6975617 -27931953 - AluY SINE Alu -3 308 1 1941 255 65 34 chr21 6977024 6977780 -27929790 - L1ME1 LINE L1 -5 6230 5452 337 244 0 12 chr21 6977781 6977863 -27929707 - L1ME1 LINE L1 -6280 116 36 209 135 27 0 chr21 6977888 6977925 -27929645 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 252 314 128 0 chr21 6978246 6978348 -27929222 + L2 LINE L2 3199 3313 0 21 57 0 0 chr21 6978385 6978420 -27929150 + AT_rich Low_complexity Low_complexity 1 35 0 23 78 0 0 chr21 6978682 6978733 -27928837 + AT_rich Low_complexity Low_complexity 1 51 0 327 79 13 158 chr21 6979892 6979968 -27927602 + MER4E LTR ERV1 1 65 -545 186 43 0 0 chr21 6980060 6980083 -27927487 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2858 115 24 12 chr21 6980100 6980639 -27926931 + MER4E LTR ERV1 56 766 0 3775 241 21 47 chr21 6980898 6981922 -27925648 - MSTD-int LTR MaLR -736 999 2 1366 221 33 40 chr21 6981924 6982323 -27925247 - MSTD LTR MaLR 0 396 1 282 277 0 12 chr21 6982334 6982417 -27925153 - MLT1E2 LTR MaLR -340 286 205 2488 54 0 0 chr21 6982988 6983285 -27924285 - AluY SINE Alu -10 301 5 21 0 0 0 chr21 6986378 6986399 -27921171 + AT_rich Low_complexity Low_complexity 1 21 0 451 329 101 14 chr21 6986571 6986790 -27920780 + MLT1J LTR MaLR 96 333 -178 2470 61 0 6 chr21 6987177 6987490 -27920080 + AluY SINE Alu 1 311 0 435 38 0 0 chr21 6987993 6988046 -27919524 + (TTA)n Simple_repeat Simple_repeat 2 54 0 2527 213 29 13 chr21 6988053 6988574 -27918996 + LTR31 LTR ERV1 75 603 -16 1605 178 110 10 chr21 6988586 6988985 -27918585 + L1MA3 LINE L1 3323 3761 -2385 1082 108 7 0 chr21 6988986 6989134 -27918436 - AluSq/x SINE Alu -164 149 1 6543 151 18 10 chr21 6989134 6991092 -27916478 + L1MA3 LINE L1 4323 6295 -10 23 0 0 0 chr21 6991396 6991419 -27916151 + AT_rich Low_complexity Low_complexity 1 23 0 517 91 0 0 chr21 6991713 6991790 -27915780 - L1MA1 LINE L1 -2 6300 6224 420 174 25 0 chr21 6992761 6992882 -27914688 + (TA)n Simple_repeat Simple_repeat 2 125 0 1124 281 60 50 chr21 6993531 6994086 -27913484 + L1MEc LINE L1 250 809 -5798 888 209 5 24 chr21 6994090 6994296 -27913274 + L1MD3 LINE L1 7778 7979 -16 343 318 46 29 chr21 6994807 6994980 -27912590 + L1ME3A LINE L1 5965 6140 -30 317 284 0 0 chr21 6995656 6995744 -27911826 - MER69 DNA AcHobo 0 2526 2439 289 237 132 0 chr21 6995753 6995829 -27911741 - MER69 DNA AcHobo -2394 132 47 2121 317 50 55 chr21 6999778 7000813 -27906757 - L2 LINE L2 -1007 2307 1278 2344 72 0 25 chr21 7000813 7001132 -27906438 - AluY SINE Alu 0 311 1 2121 317 50 55 chr21 7001132 7001286 -27906284 - L2 LINE L2 -2036 1278 1125 1204 219 51 56 chr21 7001502 7001718 -27905852 - MLT1B LTR MaLR 0 390 175 222 37 0 0 chr21 7001718 7001745 -27905825 + (TG)n Simple_repeat Simple_repeat 2 28 0 1204 219 51 56 chr21 7001745 7001920 -27905650 - MLT1B LTR MaLR -215 175 1 1347 193 19 57 chr21 7002654 7003006 -27904564 + AluJb SINE Alu 5 344 0 325 312 45 32 chr21 7003007 7003164 -27904406 + L1MEc LINE L1 1550 1708 -4718 2273 264 52 4 chr21 7003500 7004057 -27903513 - MER45B DNA AcHobo -455 585 2 1239 284 14 40 chr21 7004158 7004313 -27903257 + L1M4 LINE L1 4351 4509 -1637 507 117 13 0 chr21 7004313 7004390 -27903180 - MADE1 DNA Mariner -2 78 1 1239 284 14 40 chr21 7004390 7004809 -27902761 + L1M4 LINE L1 4509 4910 -1236 1825 146 34 71 chr21 7005062 7005440 -27902130 - THE1B LTR MaLR 0 364 1 886 226 20 15 chr21 7006732 7006936 -27900634 + MLT2C2 LTR ERVL 1 205 -259 1819 221 69 13 chr21 7007032 7007484 -27900086 + ERVL LTR ERVL 761 1237 -4527 605 164 27 68 chr21 7007493 7007639 -27899931 - ERVL LTR ERVL -4027 1737 1598 1954 209 78 7 chr21 7007640 7008061 -27899509 + ERVL LTR ERVL 1719 2169 -3595 1856 202 9 3 chr21 7008056 7008402 -27899168 + ERVL LTR ERVL 2368 2715 -3049 295 258 0 0 chr21 7008555 7008621 -27898949 + ERVL LTR ERVL 2650 2715 -3049 324 261 0 0 chr21 7008917 7008986 -27898584 + ERVL LTR ERVL 2647 2715 -3049 371 214 0 0 chr21 7008989 7009059 -27898511 + ERVL LTR ERVL 2646 2715 -3049 3168 63 65 0 chr21 7009075 7009519 -27898051 - L1P LINE L1 -1460 4686 4214 1944 116 50 47 chr21 7009999 7010041 -27897529 - THE1B LTR MaLR 0 364 324 1934 125 6 41 chr21 7010041 7010361 -27897209 + AluSg SINE Alu 1 309 -1 1944 116 50 47 chr21 7010361 7010681 -27896889 - THE1B LTR MaLR -40 324 1 11203 108 6 7 chr21 7010681 7012262 -27895308 - THE1B-int LTR MaLR 0 1580 1 1852 113 96 38 chr21 7012262 7012606 -27894964 - THE1B LTR MaLR 0 364 1 411 348 67 42 chr21 7012918 7013320 -27894250 - L1ME3A LINE L1 -286 5884 5473 3787 153 68 9 chr21 7013528 7013753 -27893817 + L1MA9 LINE L1 5531 5741 -571 288 0 0 0 chr21 7013753 7013785 -27893785 + (CA)n Simple_repeat Simple_repeat 1 32 0 3787 153 68 9 chr21 7013785 7014293 -27893277 + L1MA9 LINE L1 5741 6307 -5 1229 154 14 36 chr21 7014372 7014389 -27893181 - AluJb SINE Alu -13 299 283 207 0 0 0 chr21 7014389 7014412 -27893158 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1229 154 14 36 chr21 7014412 7014615 -27892955 - AluJb SINE Alu -29 283 84 302 274 16 86 chr21 7014670 7014856 -27892714 + L1ME2 LINE L1 4233 4405 -1741 233 250 34 11 chr21 7015059 7015147 -27892423 + (TATATG)n Simple_repeat Simple_repeat 1 90 0 2281 256 68 24 chr21 7015405 7016063 -27891507 + L1ME2 LINE L1 5126 5847 -317 180 0 0 0 chr21 7016063 7016083 -27891487 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 2281 256 68 24 chr21 7016083 7016396 -27891174 + L1ME2 LINE L1 5847 6145 -19 820 172 25 0 chr21 7016662 7016819 -27890751 + MER47A DNA MER2_type 61 221 -145 23 0 0 0 chr21 7016913 7016936 -27890634 + AT_rich Low_complexity Low_complexity 1 23 0 1787 162 28 9 chr21 7017869 7018189 -27889381 + MER47A DNA MER2_type 2 327 -39 2951 162 16 16 chr21 7018192 7018704 -27888866 + MSTA-int LTR MaLR 1063 1574 -6 2040 139 132 5 chr21 7018709 7019089 -27888481 + MSTA LTR MaLR 1 428 0 849 227 11 0 chr21 7019562 7019738 -27887832 - MSTD LTR MaLR 0 396 219 299 229 8 74 chr21 7020263 7020385 -27887185 + L1ME1 LINE L1 5964 6079 -85 42 48 0 0 chr21 7020445 7020508 -27887062 + AT_rich Low_complexity Low_complexity 1 63 0 22 70 0 0 chr21 7020700 7020743 -27886827 + AT_rich Low_complexity Low_complexity 1 43 0 434 275 46 60 chr21 7021437 7021682 -27885888 + L1MD3 LINE L1 7337 7670 -325 1914 173 21 0 chr21 7022047 7022383 -27885187 + MER2 DNA MER2_type 2 344 0 431 133 40 0 chr21 7022598 7022673 -27884897 - MADE1 DNA Mariner -2 78 1 45 87 0 0 chr21 7022749 7022864 -27884706 + AT_rich Low_complexity Low_complexity 1 115 0 1111 223 59 74 chr21 7022901 7023238 -27884332 + MLT2D LTR ERVL 83 414 0 610 293 78 48 chr21 7023241 7023675 -27883895 + L1ME LINE L1 4385 4831 -1315 445 303 77 17 chr21 7024037 7024311 -27883259 + L1ME LINE L1 5352 5643 -519 1808 150 85 21 chr21 7024379 7024719 -27882851 + THE1B LTR MaLR 1 362 -2 1040 184 0 39 chr21 7024895 7025101 -27882469 + Tigger2a DNA MER2_type 1 198 -236 192 315 0 0 chr21 7025101 7025212 -27882358 + C-rich Low_complexity Low_complexity 3 113 0 1839 143 41 0 chr21 7025212 7025506 -27882064 - AluSx SINE Alu -6 306 1 954 126 24 2 chr21 7025506 7025712 -27881858 + Tigger2a DNA MER2_type 193 443 -1 21 0 0 0 chr21 7026872 7026893 -27880677 + AT_rich Low_complexity Low_complexity 1 21 0 29 84 0 0 chr21 7026941 7027012 -27880558 + AT_rich Low_complexity Low_complexity 1 71 0 327 282 117 22 chr21 7027043 7027203 -27880367 + MER20B DNA MER1_type 5 178 -41 289 333 39 46 chr21 7027892 7028045 -27879525 + L2 LINE L2 2301 2452 -862 991 145 0 10 chr21 7028200 7028393 -27879177 + L1MA6 LINE L1 6110 6300 0 22 0 0 0 chr21 7028399 7028421 -27879149 + AT_rich Low_complexity Low_complexity 1 22 0 313 284 15 30 chr21 7029088 7029222 -27878348 + L1M4 LINE L1 4473 4604 -1542 1771 150 82 20 chr21 7029700 7030053 -27877517 + THE1C LTR MaLR 1 375 0 9582 118 36 46 chr21 7030053 7031649 -27875921 + THE1C-int LTR MaLR 1 1580 0 1945 132 76 20 chr21 7031649 7032004 -27875566 + THE1C LTR MaLR 1 375 0 2005 131 0 7 chr21 7032324 7032614 -27874956 + AluSc SINE Alu 1 288 -21 246 220 0 0 chr21 7033028 7033087 -27874483 + (TA)n Simple_repeat Simple_repeat 2 60 0 253 190 38 0 chr21 7033283 7033362 -27874208 + CT-rich Low_complexity Low_complexity 2 83 0 264 130 0 0 chr21 7034535 7034581 -27872989 + (TG)n Simple_repeat Simple_repeat 1 46 0 246 136 0 0 chr21 7034900 7034944 -27872626 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 1507 237 17 11 chr21 7035543 7035902 -27871668 - MLT1A1 LTR MaLR 0 365 5 1704 214 88 38 chr21 7037454 7037931 -27869639 + MER21B LTR ERV1 147 647 -216 22 35 0 0 chr21 7038898 7038927 -27868643 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 7039021 7039056 -27868514 + AT_rich Low_complexity Low_complexity 1 35 0 3451 155 43 41 chr21 7039723 7040447 -27867123 + LTR8A LTR ERV1 3 727 0 189 74 0 0 chr21 7040851 7040878 -27866692 + (TTA)n Simple_repeat Simple_repeat 1 27 0 655 263 27 49 chr21 7042339 7042563 -27865007 + MER20 DNA MER1_type 1 219 0 2213 259 55 48 chr21 7042619 7043452 -27864118 + L1 LINE L1 5 843 -6006 390 43 0 0 chr21 7043483 7043530 -27864040 - L1PA4 LINE L1 -262 5892 5846 2318 32 0 0 chr21 7043530 7043844 -27863726 + L1PA4 LINE L1 5876 6190 0 362 289 18 54 chr21 7043969 7044116 -27863454 + L1 LINE L1 790 949 -5900 1464 216 5 35 chr21 7044131 7044525 -27863045 + L1MA4 LINE L1 2734 3115 -3031 31 0 0 0 chr21 7044525 7044556 -27863014 + AT_rich Low_complexity Low_complexity 1 31 0 547 191 118 0 chr21 7044560 7044670 -27862900 - FLAM_C SINE Alu -10 123 1 9903 181 28 33 chr21 7044671 7047647 -27859923 + L1MA4 LINE L1 3100 6055 -245 236 351 0 14 chr21 7047885 7047959 -27859611 + L2 LINE L2 3150 3222 -50 21 57 0 0 chr21 7049058 7049093 -27858477 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr21 7049549 7049591 -27857979 + AT_rich Low_complexity Low_complexity 1 42 0 3188 111 43 11 chr21 7049760 7050294 -27857276 - L1MA2 LINE L1 0 6304 5754 2016 138 45 17 chr21 7050296 7050650 -27856920 + THE1B LTR MaLR 1 364 0 10777 109 4 1 chr21 7050653 7052136 -27855434 + THE1B-int LTR MaLR 94 1580 0 1815 186 49 9 chr21 7052136 7052486 -27855084 + THE1B LTR MaLR 1 364 0 5990 166 33 15 chr21 7052486 7054148 -27853422 - L1MA2 LINE L1 -567 5737 4049 1406 195 19 39 chr21 7054328 7054636 -27852934 + AluJb SINE Alu 11 312 0 27 0 0 0 chr21 7055234 7055261 -27852309 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr21 7056482 7056505 -27851065 + AT_rich Low_complexity Low_complexity 1 23 0 357 24 0 0 chr21 7059925 7059967 -27847603 + (CA)n Simple_repeat Simple_repeat 2 43 0 333 157 57 0 chr21 7060743 7060813 -27846757 - MER53 DNA DNA 0 189 116 335 115 141 0 chr21 7060753 7060831 -27846739 + MER53 DNA DNA 20 108 -81 180 366 39 20 chr21 7062962 7063115 -27844455 + L2 LINE L2 1758 1913 -1401 254 236 32 0 chr21 7063910 7064033 -27843537 + (TA)n Simple_repeat Simple_repeat 2 128 0 24 32 0 0 chr21 7064061 7064092 -27843478 + AT_rich Low_complexity Low_complexity 1 31 0 203 167 62 7 chr21 7064138 7064282 -27843288 + (TA)n Simple_repeat Simple_repeat 1 152 0 670 188 12 0 chr21 7064404 7064564 -27843006 + (TA)n Simple_repeat Simple_repeat 2 163 0 339 171 0 0 chr21 7064582 7064658 -27842912 + (TA)n Simple_repeat Simple_repeat 2 77 0 547 294 73 47 chr21 7065475 7066025 -27841545 - L1ME3A LINE L1 -224 5946 5383 2291 114 0 3 chr21 7066257 7066564 -27841006 - AluSx SINE Alu -6 306 1 31 26 0 0 chr21 7066596 7066634 -27840936 + AT_rich Low_complexity Low_complexity 1 38 0 1654 206 8 48 chr21 7066634 7067007 -27840563 - MER52A LTR ERV1 -1397 358 1 1149 212 30 8 chr21 7067091 7067355 -27840215 + L1MD3 LINE L1 7574 7843 -152 809 206 16 11 chr21 7067359 7067548 -27840022 - MER4C LTR ERV1 0 465 276 362 242 67 58 chr21 7067759 7067879 -27839691 - MER4C LTR ERV1 -209 256 136 259 213 40 13 chr21 7067902 7067977 -27839593 - LTR24B LTR ERV1 -499 77 1 6495 168 47 20 chr21 7068040 7069207 -27838363 + MER52A LTR ERV1 557 1755 0 1728 147 17 22 chr21 7069342 7069689 -27837881 - MER4A LTR ERV1 0 664 261 648 121 0 10 chr21 7069689 7069788 -27837782 - MER4A LTR ERV1 -566 98 1 2587 46 0 0 chr21 7069797 7070103 -27837467 - AluY SINE Alu -5 306 1 262 311 38 15 chr21 7070384 7070516 -27837054 - L1MEd LINE L1 -5812 307 173 22 35 0 0 chr21 7070562 7070591 -27836979 + AT_rich Low_complexity Low_complexity 1 29 0 551 245 0 0 chr21 7070859 7070965 -27836605 + MER46B DNA MER2_type 1 106 -255 5983 67 13 13 chr21 7070967 7071745 -27835825 - LTR17 LTR ERV1 -2 778 1 2323 68 0 0 chr21 7071745 7072037 -27835533 - HERV17 LTR ERV1 0 8626 8335 299 51 0 0 chr21 7072027 7072066 -27835504 - HERV17 LTR ERV1 -1078 7548 7510 47722 60 11 2 chr21 7072059 7078028 -27829542 - HERV17 LTR ERV1 -2607 6019 1 5782 79 18 13 chr21 7078028 7078772 -27828798 - LTR17 LTR ERV1 -32 748 1 1237 165 89 0 chr21 7078772 7079008 -27828562 + MER46B DNA MER2_type 103 234 -2 25 0 0 0 chr21 7079311 7079336 -27828234 + AT_rich Low_complexity Low_complexity 1 25 0 1493 186 32 32 chr21 7079890 7080175 -27827395 + AluJo SINE Alu 4 288 -24 23 33 0 0 chr21 7080217 7080247 -27827323 + AT_rich Low_complexity Low_complexity 1 30 0 970 189 77 20 chr21 7080450 7080786 -27826784 - MSTD LTR MaLR 0 396 1 5410 275 47 28 chr21 7080791 7082488 -27825082 - MSTD-int LTR MaLR -6 1729 2 878 229 6 6 chr21 7082490 7082669 -27824901 - MSTD LTR MaLR 0 396 218 476 316 0 0 chr21 7082708 7082825 -27824745 - MSTD LTR MaLR -310 118 2 3760 114 35 122 chr21 7082870 7083730 -27823840 + LTR1 LTR ERV1 1 785 0 1714 180 41 39 chr21 7085402 7085791 -27821779 - MLT1B LTR MaLR 0 390 1 602 236 52 47 chr21 7086376 7086567 -27821003 + MIR SINE MIR 60 251 -11 1404 214 83 32 chr21 7087148 7087555 -27820015 + MSTC LTR MaLR 1 428 0 23 0 0 0 chr21 7089327 7089350 -27818220 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr21 7089632 7089654 -27817916 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr21 7091506 7091547 -27816023 + AT_rich Low_complexity Low_complexity 1 41 0 2710 205 16 4 chr21 7091685 7092201 -27815369 + Tigger7 DNA MER2_type 4 525 -208 559 139 58 0 chr21 7092195 7092281 -27815289 + Tigger7 DNA MER2_type 2396 2486 -1 1960 200 21 71 chr21 7092783 7093359 -27814211 + LTR27 LTR ERV1 3 620 -141 3549 233 68 29 chr21 7094315 7095217 -27812353 - Charlie1a DNA MER1_type -1320 1441 442 2101 189 153 10 chr21 7095217 7095708 -27811862 - MER68 LTR ERV1 -1 561 1 3549 233 68 29 chr21 7095708 7096169 -27811401 - Charlie1a DNA MER1_type -2319 442 1 1865 125 0 0 chr21 7096531 7096787 -27810783 - AluSx SINE Alu -17 295 40 242 354 23 23 chr21 7097700 7097830 -27809740 + L2 LINE L2 3134 3263 -9 485 221 8 0 chr21 7097843 7097965 -27809605 + L1M4 LINE L1 4745 4867 -1279 1681 127 52 0 chr21 7097979 7098231 -27809339 + MER41C LTR ERV1 1 265 -289 2008 119 0 0 chr21 7098233 7098501 -27809069 + AluSx SINE Alu 1 268 -44 636 93 0 0 chr21 7098501 7098587 -27808983 + AluSg/x SINE Alu 216 301 -8 1499 156 41 0 chr21 7098589 7098858 -27808712 + MER41C LTR ERV1 273 552 -2 346 127 130 7 chr21 7098869 7098946 -27808624 - THE1B LTR MaLR -97 260 184 201 161 36 18 chr21 7099079 7099135 -27808435 + (TA)n Simple_repeat Simple_repeat 1 57 0 1945 209 21 5 chr21 7099135 7099560 -27808010 + Tigger2a DNA MER2_type 2 433 -1 21 57 0 0 chr21 7101362 7101397 -27806173 + AT_rich Low_complexity Low_complexity 1 35 0 2460 119 16 3 chr21 7101823 7102193 -27805377 - THE1C LTR MaLR 0 375 1 1517 149 38 101 chr21 7103660 7103933 -27803637 - L1MA8 LINE L1 -3 6288 6048 1852 165 10 0 chr21 7103933 7104224 -27803346 + AluSx SINE Alu 1 294 -18 1517 149 38 101 chr21 7104224 7104367 -27803203 - L1MA8 LINE L1 -243 6048 5898 642 282 56 30 chr21 7104577 7104811 -27802759 + MIR SINE MIR 20 259 -3 289 388 104 13 chr21 7105088 7105472 -27802098 + L2 LINE L2 2440 2858 -456 4376 36 0 1 chr21 7106414 7107033 -27800537 - L1PA4 LINE L1 -713 5442 4869 5908 37 1 0 chr21 7107033 7107733 -27799837 + L1PA4 LINE L1 5447 6155 0 297 0 0 0 chr21 7108642 7108675 -27798895 + (CA)n Simple_repeat Simple_repeat 2 34 0 393 305 44 22 chr21 7108950 7109176 -27798394 - L1ME3A LINE L1 -315 5855 5625 514 104 13 0 chr21 7109281 7109358 -27798212 + MADE1 DNA Mariner 1 78 -2 2424 105 19 11 chr21 7109377 7109738 -27797832 + THE1C LTR MaLR 1 364 -11 23 0 0 0 chr21 7109874 7109897 -27797673 + AT_rich Low_complexity Low_complexity 1 23 0 803 83 25 0 chr21 7110020 7110141 -27797429 - Alu SINE Alu -13 297 174 934 69 0 0 chr21 7110141 7110257 -27797313 - AluY SINE Alu -195 116 1 21 0 0 0 chr21 7110264 7110285 -27797285 + AT_rich Low_complexity Low_complexity 1 21 0 6240 150 49 12 chr21 7111170 7111763 -27795807 + Tigger3b DNA MER2_type 40 610 -2418 2269 108 0 3 chr21 7111763 7112070 -27795500 - AluSc SINE Alu -3 306 1 6240 150 49 12 chr21 7112070 7112625 -27794945 + Tigger3b DNA MER2_type 610 1230 -1 260 300 73 66 chr21 7112651 7114009 -27793561 - L1M4 LINE L1 -1777 4369 3003 2023 165 88 0 chr21 7114061 7114425 -27793145 + MER57A LTR ERV1 8 403 0 189 0 0 0 chr21 7114695 7114716 -27792854 + (A)n Simple_repeat Simple_repeat 1 21 0 1927 138 0 0 chr21 7114716 7114984 -27792586 + AluSx SINE Alu 1 268 -44 378 42 0 0 chr21 7114984 7115032 -27792538 + (CA)n Simple_repeat Simple_repeat 1 48 0 2113 141 22 33 chr21 7115516 7115884 -27791686 + THE1B LTR MaLR 1 364 0 11459 93 19 3 chr21 7115884 7117438 -27790132 + THE1B-int LTR MaLR 1 1580 0 2162 114 24 38 chr21 7117438 7117807 -27789763 + THE1B LTR MaLR 1 364 0 2381 46 7 0 chr21 7119092 7119375 -27788195 - AluSc SINE Alu -9 300 16 2232 121 0 9 chr21 7119980 7120295 -27787275 - AluSx SINE Alu 0 312 1 21 0 0 0 chr21 7121171 7121192 -27786378 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 7121603 7121626 -27785944 + AT_rich Low_complexity Low_complexity 1 23 0 2681 189 9 2 chr21 7121633 7122307 -27785263 - MER72 LTR ERV1 -7 715 5 3916 57 14 2 chr21 7122384 7122891 -27784679 + LTR10D LTR ERV1 1 513 0 794 303 58 16 chr21 7123331 7123763 -27783807 + HAL1 LINE L1 1391 1840 -667 2648 165 9 0 chr21 7123816 7124271 -27783299 + L1PB3 LINE L1 5689 6147 -7 25 31 0 0 chr21 7124644 7124676 -27782894 + AT_rich Low_complexity Low_complexity 1 32 0 249 108 0 0 chr21 7125605 7125642 -27781928 + (CA)n Simple_repeat Simple_repeat 2 38 0 226 308 177 8 chr21 7125656 7125786 -27781784 + L2 LINE L2 2259 2410 -904 278 337 0 0 chr21 7125873 7125965 -27781605 + L2 LINE L2 2563 2654 -660 2405 171 5 3 chr21 7126272 7126657 -27780913 - MSTA LTR MaLR 0 428 43 6566 86 5 2 chr21 7126657 7127522 -27780048 + HERVL-A2 LTR ERVL 4788 5654 0 3210 106 11 9 chr21 7127522 7127974 -27779596 + MLT2A2 LTR ERVL 1 453 0 6016 212 15 10 chr21 7127975 7129178 -27778392 - MSTA-int LTR MaLR -442 1209 1 2265 155 2 60 chr21 7129180 7129632 -27777938 - MSTA LTR MaLR -2 426 1 783 335 47 66 chr21 7129673 7130510 -27777060 - L2 LINE L2 -517 2797 1977 1292 163 60 82 chr21 7130627 7130946 -27776624 + THE1C LTR MaLR 29 340 -35 1477 173 68 0 chr21 7130946 7131224 -27776346 - AluSx SINE Alu -2 310 14 652 297 29 5 chr21 7131384 7131648 -27775922 - L2 LINE L2 -1612 1702 1386 497 355 36 9 chr21 7131738 7131972 -27775598 + L2 LINE L2 2789 3027 -286 323 302 110 39 chr21 7132240 7132422 -27775148 + HAL1 LINE L1 2226 2420 -87 21 0 0 0 chr21 7133063 7133084 -27774486 + AT_rich Low_complexity Low_complexity 1 21 0 350 173 13 0 chr21 7133414 7133489 -27774081 + (TG)n Simple_repeat Simple_repeat 1 76 0 381 88 0 18 chr21 7133967 7134024 -27773546 + MSTA LTR MaLR 5 60 -368 21 0 0 0 chr21 7137184 7137205 -27770365 + AT_rich Low_complexity Low_complexity 1 21 0 473 316 23 6 chr21 7138319 7138490 -27769080 - LTR16A LTR ERVL -2 448 275 21 26 0 26 chr21 7138736 7138751 -27768819 + AT_rich Low_complexity Low_complexity 1 15 -23 2517 65 0 0 chr21 7138751 7139060 -27768510 - AluY SINE Alu -2 309 1 21 26 0 26 chr21 7139060 7139083 -27768487 + AT_rich Low_complexity Low_complexity 15 38 0 22 0 0 0 chr21 7139106 7139128 -27768442 + AT_rich Low_complexity Low_complexity 1 22 0 6800 71 3 5 chr21 7139129 7140811 -27766759 - L1PA8 LINE L1 -8 6164 4481 532 74 0 37 chr21 7140813 7140894 -27766676 + L1PA8 LINE L1 4388 4465 -1681 234 139 0 0 chr21 7141264 7141300 -27766270 + U2 snRNA snRNA 1 36 -152 247 64 21 21 chr21 7144807 7144854 -27762716 + (CAAAAA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr21 7145548 7145571 -27761999 + AT_rich Low_complexity Low_complexity 1 23 0 234 192 0 0 chr21 7145633 7145685 -27761885 + GA-rich Low_complexity Low_complexity 2 53 0 186 209 0 0 chr21 7145984 7146027 -27761543 + A-rich Low_complexity Low_complexity 2 44 0 2008 117 0 3 chr21 7146183 7146507 -27761063 - AluSx SINE Alu 0 323 1 32 0 0 0 chr21 7147072 7147104 -27760466 + AT_rich Low_complexity Low_complexity 1 32 0 973 236 43 43 chr21 7147158 7147509 -27760061 - MER114 LTR ERV 0 648 298 37 23 0 0 chr21 7147829 7147873 -27759697 + AT_rich Low_complexity Low_complexity 1 44 0 2311 75 7 0 chr21 7147893 7148201 -27759369 + AluY SINE Alu 1 310 -1 207 0 0 0 chr21 7150026 7150049 -27757521 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1770 220 9 28 chr21 7151012 7151434 -27756136 + MLT2D LTR ERVL 1 414 0 204 0 54 27 chr21 7151985 7152022 -27755548 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 6090 82 17 2 chr21 7152024 7152863 -27754707 - L1PA8A LINE L1 -27 6104 5254 3749 107 9 0 chr21 7152861 7153405 -27754165 + L1PA8A LINE L1 4700 5248 -898 12491 250 35 12 chr21 7153403 7158656 -27748914 - L1PA16 LINE L1 -45 7559 2179 533 368 14 18 chr21 7158845 7159065 -27748505 - L1PA16 LINE L1 -6568 1006 788 23 33 0 0 chr21 7160614 7160644 -27746926 + AT_rich Low_complexity Low_complexity 1 30 0 321 313 65 60 chr21 7161474 7161675 -27745895 - MLT1H LTR MaLR -242 307 106 707 249 92 0 chr21 7162855 7163028 -27744542 + LTR16A LTR ERVL 253 441 -9 658 265 26 57 chr21 7163267 7163497 -27744073 - MIR SINE MIR -39 223 1 2355 170 16 21 chr21 7163498 7163934 -27743636 - Tigger2a DNA MER2_type 0 434 1 228 313 65 32 chr21 7164043 7164260 -27743310 - L2 LINE L2 -963 2351 2128 666 146 0 0 chr21 7164278 7164381 -27743189 + FLAM_A SINE Alu 18 120 -22 180 0 0 0 chr21 7164381 7164401 -27743169 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 27 92 0 0 chr21 7164942 7165018 -27742552 + AT_rich Low_complexity Low_complexity 1 76 0 21 36 0 0 chr21 7165663 7165691 -27741879 + AT_rich Low_complexity Low_complexity 1 28 0 2045 106 7 3 chr21 7165981 7166273 -27741297 + AluSc SINE Alu 1 293 -16 825 142 52 0 chr21 7166445 7166579 -27740991 + THE1-int LTR MaLR 150 290 -1290 1529 274 35 53 chr21 7166677 7167188 -27740382 + L1MDa LINE L1 33 534 -6006 269 266 2 0 chr21 7167189 7167255 -27740315 + L1MDa LINE L1 580 953 -5587 1710 161 28 34 chr21 7167322 7167675 -27739895 + THE1C LTR MaLR 25 375 0 7660 216 30 17 chr21 7167701 7169320 -27738250 + THE1C-int LTR MaLR 7 1645 -6 1752 166 32 29 chr21 7169325 7169699 -27737871 + THE1C LTR MaLR 1 375 0 613 166 127 59 chr21 7169699 7169870 -27737700 + L1MDa LINE L1 947 1105 -5435 4275 154 10 36 chr21 7169870 7170670 -27736900 - MER4E LTR ERV1 0 779 1 613 166 127 59 chr21 7170670 7170727 -27736843 + L1MDa LINE L1 1105 1157 -5383 2354 128 5 16 chr21 7170727 7171095 -27736475 - THE1B LTR MaLR 0 364 1 613 166 127 59 chr21 7171095 7171169 -27736401 + L1MDa LINE L1 1157 1225 -5315 2087 138 0 6 chr21 7171169 7171481 -27736089 + AluSg SINE Alu 1 310 0 613 166 127 59 chr21 7171481 7171502 -27736068 + L1MDa LINE L1 1225 1304 -5236 773 280 27 4 chr21 7171507 7171768 -27735802 + L1MDa LINE L1 2872 3138 -3402 775 202 32 36 chr21 7171853 7172101 -27735469 + L1MDa LINE L1 3180 3426 -3114 23 0 0 0 chr21 7172257 7172280 -27735290 + AT_rich Low_complexity Low_complexity 1 23 0 255 299 9 47 chr21 7173961 7174068 -27733502 - L2 LINE L2 -39 3274 3172 282 56 0 0 chr21 7174401 7174437 -27733133 + (TG)n Simple_repeat Simple_repeat 1 36 0 251 351 78 38 chr21 7175491 7175912 -27731658 - L2 LINE L2 -1491 1823 1386 1657 238 46 15 chr21 7177064 7177425 -27730145 + MLT2D LTR ERVL 1 376 -38 768 52 0 0 chr21 7177425 7177522 -27730048 + (TA)n Simple_repeat Simple_repeat 2 98 0 1657 238 46 15 chr21 7177522 7177551 -27730019 + MLT2D LTR ERVL 376 403 -11 607 217 0 17 chr21 7177666 7177786 -27729784 + FRAM SINE Alu 37 154 -22 21 36 0 0 chr21 7177980 7178008 -27729562 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr21 7178435 7178457 -27729113 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 7179179 7179207 -27728363 + AT_rich Low_complexity Low_complexity 1 28 0 1124 108 0 0 chr21 7179357 7179514 -27728056 + AluSg/x SINE Alu 139 295 -15 1007 302 99 64 chr21 7180269 7181038 -27726532 + L2 LINE L2 1595 2390 -924 327 273 55 18 chr21 7181178 7181288 -27726282 + L2 LINE L2 2597 2710 -604 29 0 0 0 chr21 7181560 7181589 -27725981 + AT_rich Low_complexity Low_complexity 1 29 0 13852 181 38 15 chr21 7182184 7183554 -27724016 - L1PA13 LINE L1 -4 7597 6261 1659 176 27 29 chr21 7183554 7183928 -27723642 + THE1C LTR MaLR 3 375 0 13852 181 38 15 chr21 7183928 7184379 -27723191 - L1PA13 LINE L1 -1340 6261 5822 1856 143 9 40 chr21 7184379 7184701 -27722869 - AluSx SINE Alu 0 312 1 13852 181 38 15 chr21 7184701 7186787 -27720783 - L1PA13 LINE L1 -1779 5822 3606 216 0 0 0 chr21 7187272 7187296 -27720274 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 2153 232 13 15 chr21 7187297 7187841 -27719729 - L1PA13 LINE L1 -3975 3609 3067 1859 157 0 27 chr21 7187842 7188136 -27719434 + AluSx SINE Alu 1 286 -26 442 209 0 0 chr21 7188190 7188276 -27719294 - L1PA13 LINE L1 -4510 3071 2986 26 0 0 0 chr21 7188276 7188302 -27719268 + AT_rich Low_complexity Low_complexity 1 26 0 30647 32 1 1 chr21 7188302 7194327 -27713243 - L1PA3 LINE L1 -3 6152 4 3344 143 12 0 chr21 7194330 7194891 -27712679 - L1PA13 LINE L1 -4581 3000 2433 5236 251 42 16 chr21 7194937 7195133 -27712437 - L1PA13 LINE L1 -6202 1379 1190 1926 174 120 5 chr21 7195133 7195517 -27712053 - MSTA LTR MaLR 0 428 1 5236 251 42 16 chr21 7195517 7196657 -27710913 - L1PA13 LINE L1 -6391 1190 8 21 0 0 0 chr21 7196877 7196898 -27710672 + AT_rich Low_complexity Low_complexity 1 21 0 1918 159 7 0 chr21 7197622 7197931 -27709639 + AluSx SINE Alu 1 311 -1 674 299 11 0 chr21 7198762 7198946 -27708624 - MER5A DNA MER1_type -2 187 2 17614 119 22 9 chr21 7199596 7202268 -27705302 - Charlie3 DNA MER1_type -4 2706 2 4519 105 27 1 chr21 7202396 7202749 -27704821 - L1PB1 LINE L1 -1 6150 5807 342 0 0 0 chr21 7202749 7202787 -27704783 + (TG)n Simple_repeat Simple_repeat 2 39 0 4519 105 27 1 chr21 7202787 7203109 -27704461 - L1PB1 LINE L1 -344 5807 5458 342 0 0 0 chr21 7203497 7203535 -27704035 + (TG)n Simple_repeat Simple_repeat 2 39 0 730 206 8 0 chr21 7205831 7205962 -27701608 + AluJb SINE Alu 1 132 -180 871 218 6 0 chr21 7205996 7206166 -27701404 + AluJb SINE Alu 122 292 -20 24 53 0 0 chr21 7207377 7207415 -27700155 + AT_rich Low_complexity Low_complexity 1 38 0 373 291 0 16 chr21 7207649 7207776 -27699794 + (TA)n Simple_repeat Simple_repeat 2 126 0 1425 273 24 15 chr21 7207778 7208393 -27699177 + L1MC2 LINE L1 2681 3301 -2845 453 324 24 14 chr21 7208415 7208628 -27698942 + L1MC2 LINE L1 3421 3635 -2511 1140 224 81 36 chr21 7208631 7208966 -27698604 - MLT1A1 LTR MaLR -6 359 10 1971 237 40 20 chr21 7208972 7209580 -27697990 + L1MC2 LINE L1 3629 4248 -1898 2277 181 66 58 chr21 7209607 7210226 -27697344 + L1MC2 LINE L1 5706 6329 -15 192 77 0 0 chr21 7210253 7210279 -27697291 + (A)n Simple_repeat Simple_repeat 1 26 0 23 54 0 0 chr21 7210431 7210468 -27697102 + AT_rich Low_complexity Low_complexity 1 37 0 939 283 89 76 chr21 7210642 7211577 -27695993 - HAL1 LINE L1 -246 2261 1315 369 244 93 43 chr21 7211578 7211836 -27695734 - HAL1 LINE L1 -1224 1283 995 202 250 40 92 chr21 7212314 7212390 -27695180 - L2 LINE L2 0 3313 3242 1664 177 13 28 chr21 7214048 7214365 -27693205 + AluSx SINE Alu 1 312 0 189 147 0 0 chr21 7214673 7214707 -27692863 + (GA)n Simple_repeat Simple_repeat 1 34 0 24 32 0 0 chr21 7215504 7215535 -27692035 + AT_rich Low_complexity Low_complexity 1 31 0 978 325 31 41 chr21 7215578 7215822 -27691748 - L1ME LINE L1 -4326 1935 1690 3699 111 19 7 chr21 7215822 7216406 -27691164 - L1PA13 LINE L1 -5 6158 5568 978 325 31 41 chr21 7216406 7216717 -27690853 - L1ME LINE L1 -4571 1690 1386 323 296 56 38 chr21 7216747 7217949 -27689621 - L1ME LINE L1 -4831 1249 3 203 253 0 53 chr21 7218855 7218950 -27688620 + (CAAA)n Simple_repeat Simple_repeat 3 92 0 459 339 33 25 chr21 7219235 7219601 -27687969 + MER20B DNA MER1_type 93 461 -323 1519 173 35 28 chr21 7219760 7220049 -27687521 - AluJb SINE Alu -21 291 1 453 309 89 78 chr21 7220208 7220789 -27686781 + L1ME4a LINE L1 5452 6038 -83 30 27 0 0 chr21 7222545 7222582 -27684988 + AT_rich Low_complexity Low_complexity 1 37 0 25 65 0 0 chr21 7223216 7223262 -27684308 + AT_rich Low_complexity Low_complexity 1 46 0 328 292 28 28 chr21 7223411 7223555 -27684015 - L1MD1 LINE L1 -285 5957 5814 202 186 0 51 chr21 7224466 7224525 -27683045 + CT-rich Low_complexity Low_complexity 1 56 0 832 242 61 34 chr21 7224600 7224897 -27682673 - MER2 DNA MER2_type 0 344 40 927 195 43 17 chr21 7226357 7226588 -27680982 + L1MB3 LINE L1 5945 6181 -2 2046 105 0 4 chr21 7226668 7226944 -27680626 + AluSg SINE Alu 1 275 -35 270 0 0 0 chr21 7226944 7226974 -27680596 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1571 162 99 24 chr21 7228290 7228623 -27678947 + THE1B LTR MaLR 1 358 -6 670 131 10 0 chr21 7229074 7229173 -27678397 + MSTA LTR MaLR 1 100 -328 1069 62 8 0 chr21 7229174 7229304 -27678266 + AluY SINE Alu 130 260 -51 18987 168 26 18 chr21 7229305 7232734 -27674836 - L1M1 LINE L1 -4098 3467 10 777 229 64 117 chr21 7232773 7233148 -27674422 - MER57A LTR ERV1 -3 400 46 235 230 69 0 chr21 7234041 7234128 -27673442 + (TA)n Simple_repeat Simple_repeat 2 94 0 2181 216 51 2 chr21 7235784 7236233 -27671337 - LTR42 LTR ERVL -24 471 1 289 296 19 82 chr21 7236403 7236562 -27671008 + MIR SINE MIR 88 236 -26 4713 164 39 24 chr21 7236617 7237527 -27670043 + MER49 LTR ERV1 1 923 0 472 286 66 19 chr21 7237839 7238052 -27669518 + MIR SINE MIR 40 262 0 1649 162 133 3 chr21 7239093 7239438 -27668132 - MLT1B LTR MaLR 0 390 1 935 226 51 72 chr21 7239492 7239824 -27667746 - MLT1D LTR MaLR -180 325 1 771 193 70 102 chr21 7242441 7242726 -27664844 + L1MB8 LINE L1 5902 6177 -1 466 296 15 7 chr21 7244359 7244494 -27663076 + LTR16B LTR ERVL 185 320 -144 474 178 0 0 chr21 7245039 7245129 -27662441 + CT-rich Low_complexity Low_complexity 4 93 0 180 0 0 0 chr21 7245580 7245600 -27661970 + (TG)n Simple_repeat Simple_repeat 2 21 0 2400 58 0 0 chr21 7245644 7245939 -27661631 + AluY SINE Alu 1 295 -16 222 191 0 0 chr21 7247146 7247193 -27660377 + (CA)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr21 7248689 7248711 -27658859 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr21 7249099 7249135 -27658435 + AT_rich Low_complexity Low_complexity 1 36 0 53 30 0 0 chr21 7249194 7249261 -27658309 + AT_rich Low_complexity Low_complexity 1 67 0 631 299 16 0 chr21 7249952 7250136 -27657434 - MER5A DNA MER1_type -1 188 2 209 210 16 0 chr21 7250717 7250779 -27656791 + (TA)n Simple_repeat Simple_repeat 1 63 0 2129 93 7 3 chr21 7250813 7251103 -27656467 + AluSc SINE Alu 1 291 -18 21 0 0 0 chr21 7254608 7254629 -27652941 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr21 7255502 7255535 -27652035 + AT_rich Low_complexity Low_complexity 1 33 0 205 73 24 49 chr21 7255650 7255691 -27651879 + (TTTTG)n Simple_repeat Simple_repeat 3 42 0 25 0 0 0 chr21 7256421 7256446 -27651124 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr21 7256544 7256570 -27651000 + AT_rich Low_complexity Low_complexity 1 26 0 203 133 0 0 chr21 7256710 7256740 -27650830 + (TG)n Simple_repeat Simple_repeat 1 30 0 29 84 0 0 chr21 7258027 7258098 -27649472 + AT_rich Low_complexity Low_complexity 1 71 0 2074 231 32 10 chr21 7259782 7259870 -27647700 - MLT1D LTR MaLR 0 505 420 3413 140 4 4 chr21 7259870 7260397 -27647173 + MER1A DNA MER1_type 1 527 0 2074 231 32 10 chr21 7260397 7260802 -27646768 - MLT1D LTR MaLR -85 420 1 312 27 0 0 chr21 7262583 7262620 -27644950 + (CA)n Simple_repeat Simple_repeat 1 37 0 31 0 0 0 chr21 7262790 7262821 -27644749 + AT_rich Low_complexity Low_complexity 1 31 0 29 28 0 0 chr21 7263079 7263115 -27644455 + AT_rich Low_complexity Low_complexity 1 36 0 393 22 0 0 chr21 7264041 7264087 -27643483 + (TG)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr21 7264915 7264938 -27642632 + AT_rich Low_complexity Low_complexity 1 23 0 880 95 6 7 chr21 7265026 7265176 -27642394 - L1PA8A LINE L1 -406 5725 5590 237 234 128 21 chr21 7265341 7265435 -27642135 - MIR SINE MIR -93 169 66 3546 160 18 37 chr21 7265444 7266168 -27641402 + MER50 LTR ERV1 1 710 -24 23 54 0 0 chr21 7266340 7266377 -27641193 + AT_rich Low_complexity Low_complexity 1 37 0 1020 157 124 23 chr21 7266724 7266941 -27640629 - AluJo SINE Alu -59 253 15 1603 216 20 14 chr21 7267595 7268222 -27639348 - L1MB8 LINE L1 0 6178 5459 2161 188 44 69 chr21 7268222 7268790 -27638780 + MLT2B3 LTR ERVL 1 554 0 1603 216 20 14 chr21 7268790 7269165 -27638405 - L1MB8 LINE L1 -719 5459 5088 361 154 0 0 chr21 7269168 7269246 -27638324 - L1MB8 LINE L1 -1090 5056 4979 22 0 0 0 chr21 7269294 7269316 -27638254 + AT_rich Low_complexity Low_complexity 1 22 0 973 293 44 15 chr21 7269756 7270097 -27637473 - L1M4b LINE L1 -5913 946 596 1005 217 56 97 chr21 7270126 7270499 -27637071 + MLT1A2 LTR MaLR 12 369 -5 906 285 72 55 chr21 7270534 7271022 -27636548 - L1M4b LINE L1 -6353 506 11 503 306 77 55 chr21 7272763 7273090 -27634480 - MLT1H LTR MaLR -204 345 12 188 162 12 62 chr21 7273528 7273608 -27633962 + (TATATG)n Simple_repeat Simple_repeat 3 78 0 28 29 0 0 chr21 7273905 7273940 -27633630 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr21 7274001 7274030 -27633540 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr21 7274120 7274143 -27633427 + (TA)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr21 7274155 7274183 -27633387 + AT_rich Low_complexity Low_complexity 1 28 0 45 83 0 0 chr21 7275190 7275298 -27632272 + AT_rich Low_complexity Low_complexity 1 108 0 4376 142 61 18 chr21 7275298 7276133 -27631437 - L1MA5 LINE L1 -15 6285 5415 3428 187 24 30 chr21 7276133 7276934 -27630636 + L1MA5 LINE L1 4608 5403 -743 269 378 61 5 chr21 7277133 7277329 -27630241 + MIR SINE MIR 49 255 -7 186 43 0 0 chr21 7279088 7279111 -27628459 + (CA)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr21 7279342 7279363 -27628207 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr21 7280717 7280745 -27626825 + AT_rich Low_complexity Low_complexity 1 28 0 743 163 0 31 chr21 7281628 7281757 -27625813 - AluJb SINE Alu -187 125 1 226 278 0 42 chr21 7282245 7282317 -27625253 + G-rich Low_complexity Low_complexity 5 73 0 458 200 113 0 chr21 7282829 7282900 -27624670 + L1MA9 LINE L1 6079 6141 -171 360 0 0 0 chr21 7282900 7282940 -27624630 + (CA)n Simple_repeat Simple_repeat 1 40 0 458 200 113 0 chr21 7282940 7282983 -27624587 + L1MA9 LINE L1 6141 6206 -106 1967 186 36 31 chr21 7282986 7283534 -27624036 - MLT2A2 LTR ERVL 0 554 1 2242 83 0 0 chr21 7284746 7285034 -27622536 - AluSg SINE Alu -22 288 1 1670 76 0 9 chr21 7285709 7285933 -27621637 + AluY SINE Alu 76 297 -14 254 109 47 47 chr21 7286936 7287000 -27620570 + T-rich Low_complexity Low_complexity 2 65 0 35 54 0 0 chr21 7287901 7287957 -27619613 + AT_rich Low_complexity Low_complexity 1 56 0 2321 82 0 3 chr21 7288303 7288607 -27618963 + AluY SINE Alu 1 303 -8 1100 204 19 23 chr21 7290115 7290379 -27617191 + L1MA8 LINE L1 5982 6244 -47 5227 195 15 42 chr21 7290397 7291923 -27615647 + L1PA11 LINE L1 1176 2676 -3785 8005 157 37 18 chr21 7291923 7294152 -27613418 + L1PA11 LINE L1 4192 6486 -3 359 292 84 32 chr21 7294467 7294621 -27612949 + MLT1J LTR MaLR 1 162 -349 189 308 77 15 chr21 7294905 7295035 -27612535 - L2 LINE L2 -1265 2049 1912 1707 144 40 7 chr21 7295426 7295704 -27611866 + AluJo SINE Alu 1 287 -25 29 47 0 0 chr21 7295867 7295910 -27611660 + AT_rich Low_complexity Low_complexity 1 43 0 237 344 0 42 chr21 7298575 7298671 -27608899 + MLT1J1 LTR MaLR 28 119 -327 2209 112 3 0 chr21 7299039 7299333 -27608237 + AluSc SINE Alu 1 295 -14 21 0 0 0 chr21 7299446 7299467 -27608103 + AT_rich Low_complexity Low_complexity 1 21 0 1079 226 104 27 chr21 7299733 7300136 -27607434 + MER104 DNA MER2_type 1288 1892 -3 21 0 0 0 chr21 7300172 7300193 -27607377 + AT_rich Low_complexity Low_complexity 1 21 0 515 310 102 7 chr21 7300829 7301145 -27606425 + MLT1J2 LTR MaLR 1 344 -106 242 266 0 0 chr21 7301340 7301408 -27606162 + L1MC/D LINE L1 5304 5364 -782 543 271 21 7 chr21 7301410 7301554 -27606016 + MLT1A1 LTR MaLR 3 148 -217 463 230 111 0 chr21 7301558 7301684 -27605886 + L1MC/D LINE L1 5493 5632 -727 1386 156 0 9 chr21 7301728 7301959 -27605611 - MER4A LTR ERV1 0 664 436 304 71 24 0 chr21 7302051 7302093 -27605477 - MER4A LTR ERV1 -361 303 261 699 101 0 10 chr21 7302093 7302192 -27605378 - MER4A LTR ERV1 -566 98 1 801 256 9 13 chr21 7302196 7302427 -27605143 + LTR8 LTR ERV1 55 261 -435 1280 204 103 25 chr21 7302520 7302888 -27604682 + LTR8A LTR ERV1 287 683 -44 5939 214 47 47 chr21 7302888 7304302 -27603268 - MER65C-int LTR ERV1 -722 3469 2055 713 269 90 16 chr21 7304536 7304792 -27602778 - MER101B LTR ERV1 -272 298 24 2057 223 3 10 chr21 7304829 7305215 -27602355 - MER65C-int LTR ERV1 -2148 2043 1661 1319 200 39 101 chr21 7305289 7305933 -27601637 + LTR28 LTR ERV1 69 732 -94 1985 187 61 25 chr21 7306244 7306640 -27600930 - MER65C-int LTR ERV1 -2527 1664 1255 2613 38 0 6 chr21 7306641 7306954 -27600616 + AluY SINE Alu 1 311 0 1154 44 0 20 chr21 7307152 7307449 -27600121 - L1PA7 LINE L1 -3 6151 5814 2861 243 21 27 chr21 7307449 7308162 -27599408 - MER65C-int LTR ERV1 -2531 4227 3519 2372 216 31 4 chr21 7308688 7309175 -27598395 - MER65C-int LTR ERV1 -3691 500 1 197 119 24 0 chr21 7310135 7310177 -27597393 + A-rich Low_complexity Low_complexity 1 43 0 208 141 14 42 chr21 7310210 7310281 -27597289 + (TTAAA)n Simple_repeat Simple_repeat 1 69 0 33 73 0 0 chr21 7310290 7310358 -27597212 + AT_rich Low_complexity Low_complexity 1 68 0 258 328 37 62 chr21 7310710 7310799 -27596771 + L2 LINE L2 2935 3025 -288 2023 114 3 10 chr21 7310799 7311107 -27596463 - AluSx SINE Alu -6 306 1 258 328 37 62 chr21 7311107 7311340 -27596230 + L2 LINE L2 3025 3249 -64 1641 176 3 7 chr21 7311416 7311712 -27595858 - MER65C LTR ERV1 -1 460 166 32 0 0 0 chr21 7311777 7311809 -27595761 + AT_rich Low_complexity Low_complexity 1 32 0 264 321 37 45 chr21 7311991 7312125 -27595445 + MIR SINE MIR 45 177 -85 1535 213 6 13 chr21 7312348 7312662 -27594908 + AluJb SINE Alu 1 312 0 308 186 0 14 chr21 7312665 7312735 -27594835 + GA-rich Low_complexity Low_complexity 3 71 0 1498 120 5 5 chr21 7312782 7313036 -27594534 - AluSq SINE Alu 0 319 66 2180 200 50 2 chr21 7313268 7313708 -27593862 - LOR1b LTR ERV1 0 461 1 24 67 0 0 chr21 7314315 7314360 -27593210 + AT_rich Low_complexity Low_complexity 1 45 0 25 65 0 0 chr21 7314423 7314469 -27593101 + AT_rich Low_complexity Low_complexity 1 46 0 279 330 10 0 chr21 7314509 7314606 -27592964 + (TATATG)n Simple_repeat Simple_repeat 3 100 0 24 0 0 0 chr21 7315032 7315056 -27592514 + AT_rich Low_complexity Low_complexity 1 24 0 1876 205 70 0 chr21 7315645 7316015 -27591555 + MSTD LTR MaLR 1 396 0 749 280 10 0 chr21 7316369 7316576 -27590994 - MER6B DNA MER2_type -1 209 1 833 194 0 7 chr21 7316877 7317032 -27590538 + MLT1A1 LTR MaLR 1 154 -211 407 209 43 61 chr21 7317035 7317150 -27590420 + FLAM_C SINE Alu 4 116 -17 210 118 0 0 chr21 7317152 7317186 -27590384 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 614 274 19 13 chr21 7317187 7317344 -27590226 + MLT1A1 LTR MaLR 149 306 -59 210 143 0 0 chr21 7317481 7317516 -27590054 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 24 53 0 0 chr21 7317751 7317789 -27589781 + AT_rich Low_complexity Low_complexity 1 38 0 28 48 0 0 chr21 7319571 7319613 -27587957 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr21 7320919 7320945 -27586625 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 21 0 0 0 chr21 7321534 7321555 -27586015 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr21 7321839 7321862 -27585708 + AT_rich Low_complexity Low_complexity 1 23 0 488 220 20 0 chr21 7321863 7321963 -27585607 - FLAM_A SINE Alu -21 121 20 1796 258 29 35 chr21 7322208 7322692 -27584878 + MLT1E3 LTR MaLR 144 624 0 1137 153 18 9 chr21 7323366 7323595 -27583975 - L1PA13 LINE L1 0 6163 5933 22 0 0 0 chr21 7324113 7324135 -27583435 + AT_rich Low_complexity Low_complexity 1 22 0 384 22 0 0 chr21 7324654 7324699 -27582871 + (CA)n Simple_repeat Simple_repeat 2 46 0 7834 180 53 17 chr21 7324714 7326740 -27580830 + L1MC1 LINE L1 22 2204 -4222 883 287 80 0 chr21 7326767 7327091 -27580479 + L1MC1 LINE L1 4739 5088 -1338 5249 13 0 0 chr21 7327091 7327689 -27579881 + L1HS LINE L1 5556 6153 -2 186 71 0 0 chr21 7327690 7327718 -27579852 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 5125 195 43 17 chr21 7327721 7329212 -27578358 + L1MC1 LINE L1 5087 6612 -1 687 242 59 59 chr21 7329256 7329475 -27578095 + MER20 DNA MER1_type 1 219 0 186 43 0 0 chr21 7330505 7330528 -27577042 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 619 180 62 45 chr21 7331125 7331139 -27576431 + MER53 DNA DNA 9 21 -168 2052 129 20 3 chr21 7331139 7331442 -27576128 + AluSx SINE Alu 1 308 -4 619 180 62 45 chr21 7331442 7331605 -27575965 + MER53 DNA DNA 21 189 0 36 23 0 0 chr21 7334275 7334318 -27573252 + AT_rich Low_complexity Low_complexity 1 43 0 24 67 0 0 chr21 7335278 7335323 -27572247 + AT_rich Low_complexity Low_complexity 1 45 0 252 91 0 0 chr21 7335658 7335691 -27571879 - MLT1I LTR MaLR -269 140 108 182 319 77 11 chr21 7337688 7337779 -27569791 - L2 LINE L2 0 3313 3217 185 250 39 19 chr21 7338442 7338494 -27569076 + MER5A DNA MER1_type 128 180 -9 771 282 11 11 chr21 7338559 7338736 -27568834 + MER5A DNA MER1_type 13 189 0 1694 228 33 31 chr21 7339074 7339530 -27568040 + MSTB2 LTR MaLR 1 457 0 1208 81 6 0 chr21 7339686 7339860 -27567710 + (TCTCC)n Simple_repeat Simple_repeat 4 178 0 354 45 0 0 chr21 7339861 7339905 -27567665 + (TCCCC)n Simple_repeat Simple_repeat 4 47 0 189 0 0 0 chr21 7339905 7339926 -27567644 + (TTTTC)n Simple_repeat Simple_repeat 2 22 0 2334 18 4 4 chr21 7339928 7340207 -27567363 - AluY SINE Alu -32 279 1 318 26 0 0 chr21 7340990 7341029 -27566541 + (TG)n Simple_repeat Simple_repeat 2 40 0 437 91 0 13 chr21 7341523 7341600 -27565970 + (TAAAA)n Simple_repeat Simple_repeat 2 77 0 696 189 30 80 chr21 7341939 7342140 -27565430 - L1MC/D LINE L1 -2042 5743 5553 1137 223 29 7 chr21 7342139 7342417 -27565153 + L1MC3 LINE L1 6197 6480 -1305 3067 214 45 45 chr21 7342420 7343224 -27564346 + L1MC3 LINE L1 6558 7361 -424 2252 97 0 3 chr21 7343237 7343537 -27564033 + AluSp SINE Alu 1 299 -14 22 0 0 0 chr21 7344127 7344149 -27563421 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr21 7344345 7344386 -27563184 + AT_rich Low_complexity Low_complexity 1 41 0 30 59 0 0 chr21 7344413 7344464 -27563106 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr21 7344582 7344617 -27562953 + AT_rich Low_complexity Low_complexity 1 35 0 223 279 16 16 chr21 7344995 7345056 -27562514 + L2 LINE L2 3211 3271 -1 212 244 0 0 chr21 7347344 7347385 -27560185 + polypyrimidine Low_complexity Low_complexity 2 42 0 309 381 86 30 chr21 7347574 7347876 -27559694 + L2 LINE L2 2492 2810 -504 24 32 0 0 chr21 7348946 7348977 -27558593 + AT_rich Low_complexity Low_complexity 1 31 0 227 137 0 20 chr21 7349569 7349620 -27557950 + L1MCa LINE L1 2005 2054 -4372 254 356 91 58 chr21 7350774 7351103 -27556467 + L2 LINE L2 2924 3263 -9 193 411 50 7 chr21 7351190 7351331 -27556239 - L2 LINE L2 -427 2887 2741 1804 137 11 0 chr21 7351843 7352120 -27555450 + AluSq SINE Alu 17 296 -17 207 182 45 30 chr21 7352147 7352213 -27555357 + A-rich Low_complexity Low_complexity 2 68 0 273 240 141 25 chr21 7353095 7353216 -27554354 - L3 LINE CR1 -542 1035 901 456 233 75 44 chr21 7353790 7353860 -27553710 + MIR SINE MIR 99 165 -97 2019 134 0 16 chr21 7353860 7354167 -27553403 - AluSc SINE Alu -7 302 1 456 233 75 44 chr21 7354167 7354255 -27553315 + MIR SINE MIR 165 262 0 21 0 0 0 chr21 7354255 7354276 -27553294 + AT_rich Low_complexity Low_complexity 1 21 0 2041 121 13 7 chr21 7354969 7355275 -27552295 - AluSg SINE Alu 0 310 3 2524 68 0 0 chr21 7355617 7355928 -27551642 - AluY SINE Alu 0 311 1 443 307 45 11 chr21 7356252 7356431 -27551139 + LTR16A1 LTR ERVL 55 239 -218 21 95 0 0 chr21 7356895 7356958 -27550612 + AT_rich Low_complexity Low_complexity 1 63 0 2986 82 13 22 chr21 7357231 7357682 -27549888 - L1PA13 LINE L1 -5 6158 5712 23 33 0 0 chr21 7357922 7357952 -27549618 + AT_rich Low_complexity Low_complexity 1 30 0 1875 148 3 14 chr21 7357961 7358252 -27549318 - AluSg SINE Alu -20 290 3 272 249 41 95 chr21 7358490 7358659 -27548911 + HAL1 LINE L1 90 249 -2258 6179 131 3 4 chr21 7358654 7359588 -27547982 - THE1B-int LTR MaLR -647 933 1 1753 128 119 33 chr21 7359588 7359923 -27547647 - THE1B LTR MaLR 0 364 1 792 275 75 81 chr21 7361477 7361997 -27545573 - MLT1H LTR MaLR -8 541 25 399 41 0 0 chr21 7362291 7362340 -27545230 + (CA)n Simple_repeat Simple_repeat 2 50 0 219 342 25 0 chr21 7362784 7362863 -27544707 - L2 LINE L2 -797 2517 2437 1832 108 4 0 chr21 7363142 7363391 -27544179 - AluSg SINE Alu -19 291 42 1852 152 52 38 chr21 7365915 7366283 -27541287 - THE1C LTR MaLR -2 373 1 265 303 156 0 chr21 7366289 7366398 -27541172 - L2 LINE L2 0 3313 3188 1948 281 57 29 chr21 7366481 7367233 -27540337 - L2 LINE L2 -243 3070 2299 194 277 32 64 chr21 7367564 7367658 -27539912 - L2 LINE L2 0 3272 3182 1445 203 37 26 chr21 7368036 7368385 -27539185 + MLT1A2 LTR MaLR 1 353 -21 656 167 14 22 chr21 7368404 7368542 -27539028 + MLT1A2-int LTR MaLR 2 138 -1597 1014 243 40 40 chr21 7368549 7368853 -27538717 - MER67B LTR ERV1 -357 304 1 231 206 63 0 chr21 7368883 7368946 -27538624 - L1 LINE L1 -1599 4547 4481 347 277 36 24 chr21 7369474 7369640 -27537930 - L1 LINE L1 -2237 3909 3742 477 95 0 12 chr21 7369643 7369727 -27537843 - Alu SINE Alu -2 309 227 564 246 16 8 chr21 7369794 7369920 -27537650 + MLT2B1 LTR ERVL 345 471 -49 210 200 20 0 chr21 7369957 7370007 -27537563 + (TA)n Simple_repeat Simple_repeat 2 52 0 203 122 54 40 chr21 7370190 7370264 -27537306 + (TATAA)n Simple_repeat Simple_repeat 1 75 0 948 203 14 14 chr21 7370355 7370567 -27537003 - L1MA9 LINE L1 -42 6270 6059 2773 208 47 25 chr21 7370569 7371551 -27536019 - L1MA9 LINE L1 -620 5692 4698 584 184 0 0 chr21 7371669 7371767 -27535803 + LTR52-int LTR ERVL 1999 2096 -3589 401 154 96 48 chr21 7371923 7372027 -27535543 + LTR52-int LTR ERVL 1088 1196 -2360 247 171 24 0 chr21 7372654 7372695 -27534875 + 5S rRNA rRNA 1 42 -79 213 132 0 0 chr21 7373251 7373289 -27534281 + (CA)n Simple_repeat Simple_repeat 2 39 0 9703 163 21 30 chr21 7373810 7375278 -27532292 + Tigger1 DNA MER2_type 1 1453 -965 2522 104 13 11 chr21 7375278 7375654 -27531916 - L1PA13 LINE L1 -4 6159 5783 9703 163 21 30 chr21 7375654 7375948 -27531622 + Tigger1 DNA MER2_type 1453 1748 -670 1397 177 44 4 chr21 7375952 7376200 -27531370 + AluSx SINE Alu 6 263 -49 693 167 16 8 chr21 7378323 7378449 -27529121 + FLAM_C SINE Alu 1 127 -16 710 160 0 16 chr21 7379821 7379946 -27527624 - FLAM_C SINE Alu -20 123 1 33 25 0 0 chr21 7380041 7380081 -27527489 + AT_rich Low_complexity Low_complexity 1 40 0 2143 125 10 13 chr21 7380284 7380638 -27526932 - AluSx SINE Alu 0 355 3 929 248 60 10 chr21 7381012 7381465 -27526105 + MER34 LTR ERV1 14 517 -25 1955 172 77 0 chr21 7381521 7381887 -27525683 + MER57A LTR ERV1 8 401 -2 22 35 0 0 chr21 7382407 7382436 -27525134 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 7382674 7382695 -27524875 + AT_rich Low_complexity Low_complexity 1 21 0 2030 259 53 51 chr21 7382880 7383116 -27524454 + LTR27 LTR ERV1 7 1750 -5 1486 253 63 56 chr21 7383133 7383918 -27523652 + LTR28 LTR ERV1 264 1750 -5 709 175 51 45 chr21 7384625 7384802 -27522768 - L1MD1 LINE L1 0 6242 6065 444 266 87 39 chr21 7384834 7385063 -27522507 - L1M4 LINE L1 -3028 3118 2879 1356 272 20 20 chr21 7385063 7385456 -27522114 - L1MDa LINE L1 -6030 510 118 41 58 0 0 chr21 7385463 7385532 -27522038 + AT_rich Low_complexity Low_complexity 1 69 0 24 67 0 0 chr21 7385933 7385978 -27521592 + AT_rich Low_complexity Low_complexity 1 45 0 279 71 0 0 chr21 7387232 7387274 -27520296 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 3215 138 25 27 chr21 7387451 7388234 -27519336 + L1P5 LINE L1 4992 5775 -376 23 33 0 0 chr21 7388575 7388605 -27518965 + AT_rich Low_complexity Low_complexity 1 30 0 581 265 80 99 chr21 7388703 7389126 -27518444 - MLT1H LTR MaLR -3 546 132 1798 198 50 22 chr21 7389394 7389758 -27517812 + MSTA LTR MaLR 51 424 -4 2128 154 25 0 chr21 7389763 7390127 -27517443 + MSTA-int LTR MaLR 2 374 -1277 28605 27 1 0 chr21 7390126 7394344 -27513226 - L1PA2 LINE L1 0 6155 1934 6380 214 8 18 chr21 7394309 7395078 -27512492 + MSTA-int LTR MaLR 347 1121 -530 1731 162 32 51 chr21 7395078 7395449 -27512121 + THE1B LTR MaLR 1 364 0 11058 115 8 0 chr21 7395449 7397016 -27510554 + THE1B-int LTR MaLR 1 1580 0 1689 132 21 103 chr21 7397016 7397403 -27510167 + THE1A LTR MaLR 1 355 0 6380 214 8 18 chr21 7397403 7397609 -27509961 + MSTA-int LTR MaLR 1119 1325 -326 4261 141 16 12 chr21 7397609 7398297 -27509273 + LTR8 LTR ERV1 1 691 0 6380 214 8 18 chr21 7398297 7398635 -27508935 + MSTA-int LTR MaLR 1325 1651 0 405 242 0 10 chr21 7398637 7398736 -27508834 + MSTA LTR MaLR 3 100 -326 2426 147 24 24 chr21 7398736 7399152 -27508418 - MSTA LTR MaLR 0 428 13 985 83 0 0 chr21 7399206 7399339 -27508231 + L1MA1 LINE L1 6170 6302 0 1434 182 18 25 chr21 7399371 7399645 -27507925 + MSTA LTR MaLR 157 428 0 2149 106 0 3 chr21 7400307 7400613 -27506957 - AluSg SINE Alu 0 305 1 1704 151 89 31 chr21 7401146 7401471 -27506099 - THE1B LTR MaLR 0 364 21 965 339 54 14 chr21 7401471 7401899 -27505671 + L2 LINE L2 2371 2815 -499 491 330 24 29 chr21 7402061 7402267 -27505303 + L2 LINE L2 2873 3077 -236 519 114 0 0 chr21 7402577 7402656 -27504914 + AluSg/x SINE Alu 215 293 -16 1747 214 41 31 chr21 7402658 7403045 -27504525 - MSTB LTR MaLR -35 391 1 357 198 37 12 chr21 7403121 7403202 -27504368 + MLT1D LTR MaLR 48 130 -375 1137 189 8 29 chr21 7403203 7403408 -27504162 + MLT1D-int LTR MaLR 371 572 -799 1619 180 54 10 chr21 7403408 7403703 -27503867 - AluSx SINE Alu -4 308 1 1137 189 8 29 chr21 7403703 7403735 -27503835 + MLT1D-int LTR MaLR 572 603 -768 866 288 4 9 chr21 7403867 7404093 -27503477 + MLT1D-int LTR MaLR 659 883 -488 1084 287 59 51 chr21 7404177 7404668 -27502902 + MLT1D-int LTR MaLR 877 1371 0 1561 257 62 24 chr21 7404668 7405135 -27502435 + MLT1D LTR MaLR 1 485 -20 400 276 155 6 chr21 7405158 7405339 -27502231 + LTR33A LTR ERVL 287 494 -29 1173 195 5 0 chr21 7407293 7407493 -27500077 - MER47B DNA MER2_type -1 417 217 1793 184 37 6 chr21 7407854 7408208 -27499362 + MLT2C1 LTR ERVL 1 480 -40 3693 233 34 16 chr21 7408270 7408927 -27498643 + MLT1D-int LTR MaLR 1 680 -691 2269 205 29 0 chr21 7408927 7409371 -27498199 + MSTB2 LTR MaLR 1 457 0 3693 233 34 16 chr21 7409371 7409594 -27497976 + MLT1D-int LTR MaLR 680 897 -474 309 148 16 0 chr21 7409650 7409711 -27497859 + MLT1D-int LTR MaLR 1293 1354 -17 1168 235 56 3 chr21 7409755 7410161 -27497409 + MLT1C LTR MaLR 16 465 -2 21 0 0 0 chr21 7410345 7410366 -27497204 + AT_rich Low_complexity Low_complexity 1 21 0 401 290 80 22 chr21 7411525 7411663 -27495907 - L2 LINE L2 -689 2625 2480 644 299 74 56 chr21 7411702 7411860 -27495710 - L2 LINE L2 -904 2410 2256 2176 125 0 0 chr21 7411860 7412157 -27495413 - AluSx SINE Alu -13 299 3 644 299 74 56 chr21 7412157 7412225 -27495345 - L2 LINE L2 -1058 2256 2191 656 216 210 0 chr21 7412225 7412406 -27495164 - MER20 DNA MER1_type 0 219 1 644 299 74 56 chr21 7412406 7412482 -27495088 - L2 LINE L2 -1123 2191 2098 2051 129 6 10 chr21 7412482 7412793 -27494777 + AluSx SINE Alu 1 310 -2 644 299 74 56 chr21 7412793 7412826 -27494744 - L2 LINE L2 -1216 2098 2067 453 342 28 20 chr21 7412811 7413065 -27494505 - L2 LINE L2 -1201 2113 1858 1207 216 57 90 chr21 7413686 7414108 -27493462 + LTR52 LTR ERVL 12 419 -2 309 151 0 0 chr21 7414181 7414234 -27493336 + GA-rich Low_complexity Low_complexity 3 55 0 1940 133 123 0 chr21 7415073 7415397 -27492173 + THE1B LTR MaLR 1 364 0 2001 141 3 0 chr21 7415422 7415719 -27491851 + AluSx SINE Alu 1 298 -14 199 400 67 0 chr21 7416195 7416390 -27491180 - L2 LINE L2 -2861 453 246 24 32 0 0 chr21 7416965 7416996 -27490574 + AT_rich Low_complexity Low_complexity 1 31 0 1695 238 30 8 chr21 7417032 7417432 -27490138 - MLT2D LTR ERVL 0 414 6 23 0 0 0 chr21 7418309 7418332 -27489238 + AT_rich Low_complexity Low_complexity 1 23 0 1959 114 0 7 chr21 7418996 7419276 -27488294 - AluSg SINE Alu -2 308 31 21 36 0 0 chr21 7419975 7420003 -27487567 + AT_rich Low_complexity Low_complexity 1 28 0 1220 160 52 3 chr21 7421319 7421628 -27485942 + MSTA LTR MaLR 1 428 0 3535 194 35 50 chr21 7421730 7422699 -27484871 + LTR5 LTR ERVK 1 955 -14 1033 148 144 4 chr21 7422806 7423056 -27484514 - L1MA7 LINE L1 0 6291 6007 998 138 36 67 chr21 7423199 7423424 -27484146 - L1MA7 LINE L1 -280 6011 5794 658 219 19 32 chr21 7423424 7423579 -27483991 + MSTD LTR MaLR 1 153 -243 342 282 8 17 chr21 7423682 7423799 -27483771 + MSTD LTR MaLR 250 365 0 1696 198 38 0 chr21 7423799 7424138 -27483432 - L1M2 LINE L1 -493 5798 5447 30 27 0 0 chr21 7424571 7424608 -27482962 + AT_rich Low_complexity Low_complexity 1 37 0 4126 33 0 0 chr21 7424782 7425352 -27482218 - L1PA5 LINE L1 -691 5463 4894 5552 43 32 0 chr21 7425352 7426031 -27481539 + L1PA5 LINE L1 5450 6152 -2 23 33 0 0 chr21 7426032 7426062 -27481508 + AT_rich Low_complexity Low_complexity 1 30 0 39 22 0 0 chr21 7426521 7426567 -27481003 + AT_rich Low_complexity Low_complexity 1 46 0 515 326 28 14 chr21 7426885 7427103 -27480467 + LTR16A LTR ERVL 34 254 -196 516 351 34 8 chr21 7427500 7427768 -27479802 + HERV16 LTR ERVL 261 535 -4461 467 16 0 16 chr21 7428056 7428117 -27479453 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 309 266 135 76 chr21 7429229 7429466 -27478104 + HERV16 LTR ERVL 2192 2442 -2554 589 266 83 31 chr21 7429725 7429917 -27477653 + MER20 DNA MER1_type 18 219 0 1982 143 10 0 chr21 7429933 7430226 -27477344 - AluSx SINE Alu -16 296 1 702 307 42 0 chr21 7430299 7430511 -27477059 + LTR16A LTR ERVL 230 450 0 26 64 0 0 chr21 7430601 7430648 -27476922 + AT_rich Low_complexity Low_complexity 1 47 0 31 88 0 0 chr21 7431325 7431405 -27476165 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr21 7431513 7431534 -27476036 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr21 7433165 7433203 -27474367 + AT_rich Low_complexity Low_complexity 1 38 0 2010 196 65 9 chr21 7433777 7434182 -27473388 - L1MB3 LINE L1 -2 6181 5746 213 39 0 0 chr21 7434182 7434208 -27473362 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 2010 196 65 9 chr21 7434208 7434261 -27473309 - L1MB3 LINE L1 -437 5746 5697 2737 207 36 28 chr21 7434263 7435235 -27472335 - L1MB3 LINE L1 -525 5658 4673 3041 222 52 35 chr21 7435247 7436214 -27471356 - L1MB3 LINE L1 -1516 4630 3648 436 237 3 0 chr21 7436260 7436370 -27471200 - L1MCa LINE L1 -3950 2614 2517 2675 262 53 32 chr21 7436364 7436486 -27471084 - L1MCa LINE L1 -4948 1097 979 1812 157 29 32 chr21 7436486 7436862 -27470708 - THE1C LTR MaLR 0 375 1 2675 262 53 32 chr21 7436862 7437580 -27469990 - L1MCa LINE L1 -5066 979 236 3638 122 71 2 chr21 7437580 7438170 -27469400 + MER41B LTR ERV1 1 631 -4 2675 262 53 32 chr21 7438170 7438201 -27469369 - L1MCa LINE L1 -5809 236 207 2657 176 35 76 chr21 7438289 7439010 -27468560 - LTR8 LTR ERV1 0 691 1 438 228 83 67 chr21 7439443 7439623 -27467947 - L1MCa LINE L1 -5855 190 8 2716 3 3 0 chr21 7439636 7439935 -27467635 + AluYa5 SINE Alu 1 300 -11 25 31 0 0 chr21 7440437 7440469 -27467101 + AT_rich Low_complexity Low_complexity 1 32 0 1178 148 35 0 chr21 7441747 7441950 -27465620 - Tigger7 DNA MER2_type 0 2487 2278 2272 190 9 46 chr21 7441953 7442406 -27465164 - Tigger7 DNA MER2_type -2048 439 4 23 54 0 0 chr21 7442494 7442531 -27465039 + AT_rich Low_complexity Low_complexity 1 37 0 1323 277 56 45 chr21 7442862 7443648 -27463922 - HAL1b LINE L1 -429 919 125 260 276 49 32 chr21 7444897 7444990 -27462580 + MLT1J2 LTR MaLR 51 145 -305 1346 215 94 30 chr21 7444990 7445353 -27462217 - MLT1B LTR MaLR 0 390 5 225 94 0 0 chr21 7445435 7445467 -27462103 + (CA)n Simple_repeat Simple_repeat 1 32 0 403 314 51 6 chr21 7445698 7445711 -27461859 + L1ME3 LINE L1 5678 5689 -481 2122 102 24 0 chr21 7445711 7446005 -27461565 + AluSg SINE Alu 1 301 -9 403 314 51 6 chr21 7446005 7446250 -27461320 + L1ME3 LINE L1 5689 5948 -222 25 83 0 0 chr21 7446469 7446529 -27461041 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr21 7446610 7446631 -27460939 + AT_rich Low_complexity Low_complexity 1 21 0 2202 95 0 10 chr21 7446688 7446993 -27460577 + AluY SINE Alu 1 302 -9 248 275 110 0 chr21 7448251 7448342 -27459228 + MIR SINE MIR 118 218 -44 891 250 107 29 chr21 7448503 7448811 -27458759 + LTR28 LTR ERV1 1 332 -688 679 231 8 27 chr21 7448816 7448991 -27458579 + MER52A LTR ERV1 334 1232 -10 1648 177 31 26 chr21 7450176 7450526 -27457044 - L1MA4 LINE L1 -14 6286 5935 428 164 0 0 chr21 7450531 7450604 -27456966 + L1MA4 LINE L1 5868 5940 -363 399 339 28 27 chr21 7450746 7450993 -27456577 - L1ME3A LINE L1 -163 6003 5761 21 36 0 0 chr21 7451252 7451280 -27456290 + AT_rich Low_complexity Low_complexity 1 28 0 363 325 114 0 chr21 7452212 7452335 -27455235 + MLT1E LTR MaLR 3 139 -454 1373 219 70 110 chr21 7452326 7452870 -27454700 + MLT1E LTR MaLR 103 593 0 2615 33 3 0 chr21 7454337 7454644 -27452926 - AluY SINE Alu -3 308 1 466 234 0 0 chr21 7455077 7455171 -27452399 - AluJo SINE Alu -9 303 210 22 0 0 0 chr21 7455171 7455193 -27452377 + AT_rich Low_complexity Low_complexity 1 22 0 644 221 7 7 chr21 7455193 7455338 -27452232 - AluJo SINE Alu -167 145 1 2628 144 32 8 chr21 7456532 7457004 -27450566 - MER31A LTR ERV1 0 485 3 5142 181 25 15 chr21 7457838 7457949 -27449621 - L1PA16 LINE L1 0 6166 6058 1865 150 58 14 chr21 7457949 7458308 -27449262 - THE1C LTR MaLR 0 375 1 5142 181 25 15 chr21 7458308 7459636 -27447934 - L1PA16 LINE L1 -108 6058 4710 22 35 0 0 chr21 7459971 7460000 -27447570 + AT_rich Low_complexity Low_complexity 1 29 0 368 338 0 32 chr21 7460029 7460183 -27447387 - L2 LINE L2 0 3313 3165 735 174 38 0 chr21 7460482 7460614 -27446956 + LTR40a LTR ERVL 6 142 -377 926 216 64 39 chr21 7460734 7460885 -27446685 + MER34 LTR ERV1 11 157 -385 2536 66 0 0 chr21 7460885 7461188 -27446382 + AluY SINE Alu 1 303 -8 926 216 64 39 chr21 7461188 7461526 -27446044 + MER34 LTR ERV1 157 539 -3 248 178 0 0 chr21 7461730 7461775 -27445795 + LTR40c LTR ERVL 407 451 -14 752 164 0 79 chr21 7462079 7462251 -27445319 - FRAM SINE Alu 0 165 6 23 0 0 0 chr21 7462881 7462904 -27444666 + AT_rich Low_complexity Low_complexity 1 23 0 346 67 0 0 chr21 7463264 7463309 -27444261 - L1PA13 LINE L1 -19 6144 6100 21 57 0 0 chr21 7463829 7463864 -27443706 + AT_rich Low_complexity Low_complexity 1 35 0 505 282 34 43 chr21 7464090 7464299 -27443271 - ERVL LTR ERVL -1005 4649 4443 250 286 0 0 chr21 7464536 7464599 -27442971 - ERVL LTR ERVL -1455 4199 4137 1567 305 61 48 chr21 7464600 7464943 -27442627 - ERVL LTR ERVL -2814 2840 2503 2016 128 3 3 chr21 7464943 7465249 -27442321 - AluSg SINE Alu -2 308 3 1567 305 61 48 chr21 7465249 7466038 -27441532 - ERVL LTR ERVL -3151 2503 1722 1140 243 27 46 chr21 7466080 7466450 -27441120 - MLT1A1 LTR MaLR 0 365 3 442 291 89 57 chr21 7466516 7466920 -27440650 - MLT2F LTR ERVL 0 663 214 401 226 12 0 chr21 7466965 7467049 -27440521 - MLT2F LTR ERVL -578 85 1 23844 40 3 0 chr21 7467880 7471601 -27435969 + L1PA5 LINE L1 2410 6146 -8 321 26 0 0 chr21 7472336 7472374 -27435196 + (TA)n Simple_repeat Simple_repeat 2 39 0 1276 257 48 69 chr21 7472410 7472889 -27434681 + MLT1E1 LTR MaLR 14 482 -172 2668 211 21 36 chr21 7472934 7473366 -27434204 - L1P4 LINE L1 -583 6285 5848 2460 71 0 0 chr21 7473366 7473677 -27433893 - AluY SINE Alu 0 311 1 2668 211 21 36 chr21 7473677 7474092 -27433478 - L1P4 LINE L1 -1020 5848 5404 492 71 0 0 chr21 7474092 7474162 -27433408 - Alu SINE Alu -5 306 237 7019 242 26 33 chr21 7474162 7474690 -27432880 - L1 LINE L1 -1435 5414 4884 2161 102 7 10 chr21 7474690 7474995 -27432575 + AluSx SINE Alu 2 305 -7 7019 242 26 33 chr21 7474995 7476752 -27430818 - L1 LINE L1 -1965 4884 3144 11260 206 43 42 chr21 7476805 7476934 -27430636 - L1P4 LINE L1 -3891 2958 2831 1915 144 0 10 chr21 7476934 7477233 -27430337 + AluSq SINE Alu 1 296 -17 11260 206 43 42 chr21 7477233 7479817 -27427753 - L1P4 LINE L1 -4018 2831 240 1576 228 29 81 chr21 7479822 7480366 -27427204 - L1 LINE L1 -3104 4461 3946 2176 154 37 19 chr21 7480398 7480770 -27426800 - MSTA LTR MaLR 0 428 50 1267 173 101 25 chr21 7480770 7481047 -27426523 - MSTA LTR MaLR 0 428 131 4491 196 21 18 chr21 7481047 7481448 -27426122 - L1 LINE L1 -6664 901 503 2135 107 0 0 chr21 7481448 7481746 -27425824 - AluSc SINE Alu -11 298 1 4491 196 21 18 chr21 7481746 7482232 -27425338 - L1 LINE L1 -7062 503 11 253 333 74 37 chr21 7482234 7482396 -27425174 + L2 LINE L2 2598 2765 -549 357 172 0 62 chr21 7482512 7482576 -27424994 + MER21B LTR ERV1 643 777 -154 500 0 17 0 chr21 7484337 7484397 -27423173 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2800 229 91 40 chr21 7484484 7485287 -27422283 + MER21B LTR ERV1 19 862 -1 25 31 0 0 chr21 7485373 7485405 -27422165 + AT_rich Low_complexity Low_complexity 1 32 0 1096 84 26 0 chr21 7485635 7485790 -27421780 + L1MA1 LINE L1 6134 6292 -10 275 282 0 0 chr21 7486389 7486460 -27421110 + A-rich Low_complexity Low_complexity 2 72 0 350 229 41 8 chr21 7487090 7487212 -27420358 + (TA)n Simple_repeat Simple_repeat 1 126 0 1113 164 0 0 chr21 7487576 7487747 -27419823 - AluSg/x SINE Alu -5 305 135 29 47 0 0 chr21 7490536 7490579 -27416991 + AT_rich Low_complexity Low_complexity 1 43 0 1471 208 29 69 chr21 7490607 7491087 -27416483 - LTR37B LTR ERV1 -2 466 6 38 39 0 0 chr21 7491585 7491637 -27415933 + AT_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr21 7491825 7491856 -27415714 + AT_rich Low_complexity Low_complexity 1 31 0 2266 114 0 0 chr21 7492097 7492404 -27415166 - AluSx SINE Alu -5 307 1 21 36 0 0 chr21 7492410 7492438 -27415132 + AT_rich Low_complexity Low_complexity 1 28 0 200 196 0 39 chr21 7492975 7493026 -27414544 + (TAA)n Simple_repeat Simple_repeat 2 50 0 1957 65 111 8 chr21 7493713 7494019 -27413551 + AluY SINE Alu 1 311 0 483 311 92 41 chr21 7494917 7495210 -27412360 + MLT1H LTR MaLR 134 441 -108 346 269 74 0 chr21 7495246 7495354 -27412216 - LTR16A1 LTR ERVL -2 455 340 268 263 68 25 chr21 7495586 7495704 -27411866 - LTR16A1 LTR ERVL -334 123 1 1286 225 56 22 chr21 7496090 7496450 -27411120 - MLT1A2 LTR MaLR 0 374 3 270 360 55 0 chr21 7496895 7497059 -27410511 - MIR SINE MIR -74 188 16 1282 114 4 2 chr21 7498746 7498975 -27408595 + AluSp SINE Alu 20 301 -12 21 57 0 0 chr21 7499109 7499144 -27408426 + AT_rich Low_complexity Low_complexity 1 35 0 2419 88 0 0 chr21 7499358 7499677 -27407893 - LTR14C LTR ERVK 0 587 269 674 207 78 52 chr21 7499688 7499886 -27407684 - L1MEc LINE L1 -4145 2251 2043 2477 185 96 8 chr21 7499886 7500357 -27407213 + MLT2B3 LTR ERVL 1 522 -32 940 58 26 19 chr21 7500357 7500511 -27407059 + (TCTA)n Simple_repeat Simple_repeat 2 156 0 2477 185 96 8 chr21 7500511 7500548 -27407022 + MLT2B3 LTR ERVL 522 554 0 674 207 78 52 chr21 7500548 7500619 -27406951 - L1MEc LINE L1 -4353 2043 1975 1318 320 19 10 chr21 7500833 7501314 -27406256 - L1MEc LINE L1 -5865 531 47 2114 58 0 4 chr21 7501317 7501595 -27405975 + L1PA7 LINE L1 5875 6151 -3 2318 86 3 3 chr21 7502094 7502398 -27405172 + AluY SINE Alu 1 304 -7 29 78 0 0 chr21 7503047 7503111 -27404459 + AT_rich Low_complexity Low_complexity 1 64 0 1848 279 44 26 chr21 7503993 7504595 -27402975 - HERVL40 LTR ERVL -2055 982 910 195 42 0 0 chr21 7504939 7504963 -27402607 + (TC)n Simple_repeat Simple_repeat 1 24 0 585 310 5 35 chr21 7504989 7505192 -27402378 - HERVL40 LTR ERVL -3963 1567 1371 2896 104 45 23 chr21 7505237 7505279 -27402291 - MLT2A2 LTR ERVL 0 453 413 333 0 0 0 chr21 7505279 7505316 -27402254 + (CA)n Simple_repeat Simple_repeat 2 38 0 2896 104 45 23 chr21 7505316 7505716 -27401854 - MLT2A2 LTR ERVL -40 413 1 1552 214 34 26 chr21 7505772 7506111 -27401459 + L1MB5 LINE L1 5781 6125 -49 2743 146 94 14 chr21 7506111 7506598 -27400972 + MER1A DNA MER1_type 2 527 0 1552 214 34 26 chr21 7506598 7506641 -27400929 + L1MB5 LINE L1 6125 6166 -8 1638 226 62 57 chr21 7507298 7507811 -27399759 - LTR40a LTR ERVL 0 519 4 1250 132 0 0 chr21 7508353 7508527 -27399043 - AluSg/x SINE Alu -10 300 127 560 59 50 10 chr21 7508635 7508736 -27398834 + GA-rich Low_complexity Low_complexity 4 108 0 23 33 0 0 chr21 7509696 7509726 -27397844 + AT_rich Low_complexity Low_complexity 1 30 0 1219 182 47 40 chr21 7510110 7510271 -27397299 - L1MB8 LINE L1 -6 6172 6007 2321 155 20 0 chr21 7510271 7510664 -27396906 - MER57A LTR ERV1 0 403 3 1219 182 47 40 chr21 7510664 7510799 -27396771 - L1MB8 LINE L1 -171 6007 5874 264 59 0 0 chr21 7511098 7511132 -27396438 + (TC)n Simple_repeat Simple_repeat 2 35 0 1739 148 25 3 chr21 7511133 7511416 -27396154 - AluSx SINE Alu -23 289 1 246 325 38 0 chr21 7511752 7511832 -27395738 - L2 LINE L2 -4 3268 3186 2150 160 44 42 chr21 7512007 7512271 -27395299 + Tigger2a DNA MER2_type 2 269 -2439 7382 153 32 4 chr21 7512271 7513535 -27394035 + HSMAR2 DNA Mariner 2 1300 -2 2150 160 44 42 chr21 7513535 7513702 -27393868 + Tigger2a DNA MER2_type 269 434 0 32 0 0 0 chr21 7513738 7513770 -27393800 + AT_rich Low_complexity Low_complexity 1 32 0 781 320 95 53 chr21 7514477 7514983 -27392587 + HAL1 LINE L1 545 1071 -1436 21 57 0 0 chr21 7514983 7515018 -27392552 + AT_rich Low_complexity Low_complexity 1 35 0 2159 99 7 7 chr21 7518220 7518513 -27389057 + AluSx SINE Alu 1 293 -19 399 21 0 0 chr21 7518515 7518563 -27389007 + (CA)n Simple_repeat Simple_repeat 1 48 0 37 32 0 16 chr21 7518991 7519007 -27388563 + AT_rich Low_complexity Low_complexity 1 16 -45 3351 184 24 12 chr21 7519007 7519677 -27387893 - L1MB7 LINE L1 -16 6168 5491 37 32 0 16 chr21 7519677 7519722 -27387848 + AT_rich Low_complexity Low_complexity 16 61 0 805 194 99 5 chr21 7520297 7520498 -27387072 - MER45R DNA AcHobo -378 1203 984 1291 223 16 0 chr21 7520501 7520752 -27386818 + L1M1 LINE L1 18 272 -7293 949 211 0 0 chr21 7521010 7521195 -27386375 + MLT1B LTR MaLR 1 185 -205 3008 160 19 4 chr21 7521198 7521730 -27385840 + L1MA5 LINE L1 5757 6296 -4 770 229 32 5 chr21 7521774 7521962 -27385608 + MLT1B LTR MaLR 192 384 -6 619 225 20 53 chr21 7521981 7522132 -27385438 - MER45 DNA AcHobo -1435 146 1 1308 209 3 46 chr21 7522415 7522722 -27384848 + AluJo SINE Alu 1 294 -18 210 278 0 0 chr21 7522812 7522866 -27384704 - MIR SINE MIR -42 220 167 2117 107 0 10 chr21 7522940 7523248 -27384322 + AluSx SINE Alu 1 305 -7 201 250 19 157 chr21 7523650 7523758 -27383812 + L2 LINE L2 2977 3069 -203 2704 120 21 2 chr21 7524125 7524551 -27383019 - MER57B LTR ERV1 0 434 1 10711 157 31 3 chr21 7524560 7526380 -27381190 - Tigger1 DNA MER2_type 0 2418 547 2459 204 0 2 chr21 7526439 7526885 -27380685 - Tigger1 DNA MER2_type -1964 454 10 201 39 0 0 chr21 7526885 7526911 -27380659 + (TG)n Simple_repeat Simple_repeat 2 27 0 1796 208 39 25 chr21 7527347 7527769 -27379801 - MLT2B2 LTR ERVL -40 480 6 1059 255 35 19 chr21 7527877 7528191 -27379379 - MLT1H LTR MaLR -224 325 7 2320 156 34 10 chr21 7529490 7529908 -27377662 + MSTA LTR MaLR 1 428 0 735 255 11 21 chr21 7530605 7530793 -27376777 + MLT1H LTR MaLR 97 282 -267 2687 35 0 0 chr21 7532409 7532719 -27374851 + AluY SINE Alu 1 310 -1 1679 196 0 0 chr21 7532735 7533026 -27374544 + AluSx SINE Alu 9 299 -13 387 41 0 0 chr21 7534625 7534674 -27372896 + (CA)n Simple_repeat Simple_repeat 2 50 0 228 296 68 0 chr21 7534683 7534771 -27372799 - MIR SINE MIR -65 197 104 209 319 94 42 chr21 7535146 7535337 -27372233 - MIR SINE MIR -59 203 3 975 245 13 39 chr21 7535925 7535968 -27371602 - L1MD3 LINE L1 -19 7976 7933 541 89 13 0 chr21 7535968 7536047 -27371523 + MADE1 DNA Mariner 1 80 0 975 245 13 39 chr21 7536047 7536201 -27371369 - L1MD3 LINE L1 -62 7933 7787 2439 72 0 3 chr21 7536201 7536507 -27371063 - AluY SINE Alu -6 305 1 975 245 13 39 chr21 7536507 7536618 -27370952 - L1MD3 LINE L1 -208 7787 7675 22 80 0 0 chr21 7536779 7536829 -27370741 + AT_rich Low_complexity Low_complexity 1 50 0 2573 118 13 5 chr21 7537045 7537417 -27370153 + THE1C LTR MaLR 1 375 0 340 246 33 25 chr21 7537919 7538041 -27369529 + GA-rich Low_complexity Low_complexity 1 123 0 297 331 49 14 chr21 7540883 7541025 -27366545 - L2 LINE L2 -497 2817 2671 241 349 155 30 chr21 7541569 7541833 -27365737 + L2 LINE L2 2378 2674 -640 629 298 65 11 chr21 7542122 7542397 -27365173 - L1MB7 LINE L1 -10 6174 5885 877 235 77 0 chr21 7542417 7542638 -27364932 - L1ME1 LINE L1 -335 5831 5594 1301 165 57 0 chr21 7542638 7542868 -27364702 - AluJb SINE Alu -64 248 6 2217 242 23 29 chr21 7542872 7543834 -27363736 - L1ME1 LINE L1 -574 5604 4656 240 274 29 10 chr21 7544240 7544342 -27363228 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 2010 140 56 25 chr21 7544624 7544981 -27362589 - MER39 LTR ERV1 0 707 340 305 182 12 4 chr21 7544982 7545062 -27362508 - MER39 LTR ERV1 -418 254 154 589 157 67 129 chr21 7545065 7545243 -27362327 + THE1C LTR MaLR 3 169 -206 2428 43 3 0 chr21 7545247 7545547 -27362023 + L1PA4 LINE L1 5852 6152 -3 209 122 24 0 chr21 7545576 7545617 -27361953 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 1054 122 29 44 chr21 7545619 7545823 -27361747 + THE1C LTR MaLR 175 375 0 1045 136 114 5 chr21 7545823 7546006 -27361564 - MER39 LTR ERV1 -504 203 1 264 30 0 0 chr21 7546576 7546609 -27360961 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 27 73 0 0 chr21 7548946 7549001 -27358569 + AT_rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr21 7549960 7549986 -27357584 + AT_rich Low_complexity Low_complexity 1 26 0 368 268 39 46 chr21 7550198 7550351 -27357219 + L2 LINE L2 2226 2377 -937 294 29 0 0 chr21 7550954 7550989 -27356581 + (TC)n Simple_repeat Simple_repeat 2 36 0 321 68 0 0 chr21 7550988 7551032 -27356538 + (TG)n Simple_repeat Simple_repeat 1 44 0 5985 194 58 35 chr21 7551034 7552138 -27355432 - L1MC3 LINE L1 -743 5403 4326 369 0 0 0 chr21 7552138 7552179 -27355391 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1985 102 7 18 chr21 7552182 7552467 -27355103 - AluSp SINE Alu -31 282 1 5985 194 58 35 chr21 7552467 7552973 -27354597 - L1MC3 LINE L1 -456 5690 5197 564 191 23 30 chr21 7552992 7553123 -27354447 - L1MCb LINE L1 -5742 303 174 3051 232 16 21 chr21 7553333 7554138 -27353432 + L1MC3 LINE L1 6962 7762 -23 1854 206 71 64 chr21 7554627 7555176 -27352394 + MLT2B3 LTR ERVL 1 553 -1 28 0 0 0 chr21 7557794 7557822 -27349748 + AT_rich Low_complexity Low_complexity 1 28 0 2182 138 36 17 chr21 7557826 7558238 -27349332 - L1MA3 LINE L1 -6 6299 5880 21 57 0 0 chr21 7558652 7558687 -27348883 + AT_rich Low_complexity Low_complexity 1 35 0 1556 192 20 10 chr21 7560567 7560864 -27346706 - AluJo SINE Alu -12 300 1 22 0 0 0 chr21 7561914 7561936 -27345634 + AT_rich Low_complexity Low_complexity 1 22 0 2877 191 34 31 chr21 7565792 7566472 -27341098 - L1MC2 LINE L1 -132 6212 5531 2129 234 18 37 chr21 7566523 7567400 -27340170 - L1MC2 LINE L1 -743 5403 4653 5687 103 0 0 chr21 7567505 7567696 -27339874 - L1PB1 LINE L1 0 6151 5961 2002 138 3 0 chr21 7567696 7567993 -27339577 - AluSp SINE Alu -15 298 1 5687 103 0 0 chr21 7567993 7568806 -27338764 - L1PB1 LINE L1 -189 5962 5161 7515 213 20 1 chr21 7568822 7570113 -27337457 + L1 LINE L1 2377 3709 -2437 213 65 0 0 chr21 7570113 7570144 -27337426 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 7515 213 20 1 chr21 7570144 7570539 -27337031 + L1 LINE L1 3709 4095 -2051 186 103 0 0 chr21 7571834 7571863 -27335707 + (TA)n Simple_repeat Simple_repeat 2 30 0 201 239 0 0 chr21 7572182 7572228 -27335342 + A-rich Low_complexity Low_complexity 3 48 0 180 0 0 0 chr21 7573158 7573178 -27334392 + (TA)n Simple_repeat Simple_repeat 1 20 0 237 215 15 15 chr21 7573224 7573289 -27334281 + (TA)n Simple_repeat Simple_repeat 1 65 0 23 0 0 0 chr21 7575011 7575034 -27332536 + AT_rich Low_complexity Low_complexity 1 23 0 799 241 42 23 chr21 7575613 7575829 -27331741 + LTR50 LTR ERVL 4 223 -572 212 143 24 0 chr21 7576098 7576140 -27331430 + (CATA)n Simple_repeat Simple_repeat 4 46 0 2835 206 15 18 chr21 7576143 7576744 -27330826 + MER6A DNA MER2_type 6 604 -1 277 136 59 34 chr21 7576744 7576862 -27330708 + (TA)n Simple_repeat Simple_repeat 1 121 0 342 168 16 79 chr21 7576774 7576964 -27330606 + (TATAA)n Simple_repeat Simple_repeat 2 179 0 1446 214 84 9 chr21 7577017 7577349 -27330221 - MLT1A1 LTR MaLR 0 365 9 419 188 0 8 chr21 7577406 7577534 -27330036 + (TA)n Simple_repeat Simple_repeat 1 127 0 435 19 0 0 chr21 7578884 7578936 -27328634 + (CA)n Simple_repeat Simple_repeat 1 52 0 34 96 0 0 chr21 7579171 7579275 -27328295 + AT_rich Low_complexity Low_complexity 1 104 0 1344 244 98 34 chr21 7579835 7580045 -27327525 + MLT1C LTR MaLR 1 196 -271 2180 108 7 0 chr21 7580045 7580350 -27327220 - AluSx SINE Alu -5 307 1 1344 244 98 34 chr21 7580350 7580578 -27326992 + MLT1C LTR MaLR 196 467 0 23 0 0 0 chr21 7581202 7581225 -27326345 + AT_rich Low_complexity Low_complexity 1 23 0 2358 178 34 2 chr21 7581969 7582412 -27325158 + MSTB2 LTR MaLR 1 457 0 240 35 0 0 chr21 7582576 7582605 -27324965 + (TG)n Simple_repeat Simple_repeat 2 30 0 211 176 0 0 chr21 7582804 7582838 -27324732 + (CAT)n Simple_repeat Simple_repeat 3 36 0 4171 169 32 6 chr21 7582839 7583617 -27323953 - L1MC1 LINE L1 -197 6136 5341 246 208 0 0 chr21 7584901 7584954 -27322616 + (TA)n Simple_repeat Simple_repeat 1 53 0 243 0 0 0 chr21 7585882 7585909 -27321661 + (TG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr21 7586312 7586340 -27321230 + AT_rich Low_complexity Low_complexity 1 28 0 30 105 0 0 chr21 7587914 7588028 -27319542 + AT_rich Low_complexity Low_complexity 1 114 0 731 222 106 28 chr21 7588171 7588455 -27319115 + Zaphod DNA AcHobo 3709 4014 -9 229 313 107 71 chr21 7588732 7589042 -27318528 + MLT1K LTR MaLR 190 510 -78 21 0 0 0 chr21 7589467 7589488 -27318082 + AT_rich Low_complexity Low_complexity 1 21 0 315 295 123 62 chr21 7589517 7589658 -27317912 - L2 LINE L2 -244 3069 2905 1989 158 48 22 chr21 7589658 7590013 -27317557 + THE1B LTR MaLR 1 364 0 315 295 123 62 chr21 7590013 7590115 -27317455 - L2 LINE L2 -408 2905 2811 1927 198 19 3 chr21 7590361 7590720 -27316850 - MLT1A1 LTR MaLR 0 365 1 25 0 0 0 chr21 7592473 7592498 -27315072 + AT_rich Low_complexity Low_complexity 1 25 0 1431 134 5 0 chr21 7592589 7592805 -27314765 - AluSg/x SINE Alu 0 310 94 374 214 51 20 chr21 7592896 7592994 -27314576 - MLT1J2 LTR MaLR -345 105 5 2662 208 71 79 chr21 7595097 7595873 -27311697 - MER21A LTR ERV1 -26 905 136 711 183 12 49 chr21 7595875 7596052 -27311518 - MER21A LTR ERV1 -531 165 13 29 70 0 0 chr21 7596679 7596736 -27310834 + AT_rich Low_complexity Low_complexity 1 57 0 542 342 50 35 chr21 7598154 7598390 -27309180 - L1ME4a LINE L1 -195 5926 5680 2161 168 16 45 chr21 7598390 7598837 -27308733 - Tigger2a DNA MER2_type 0 434 1 542 342 50 35 chr21 7598837 7599000 -27308570 - L1ME4a LINE L1 -441 5680 5521 607 157 0 82 chr21 7599360 7599494 -27308076 - MER82 DNA MER2_type -250 403 281 929 215 5 0 chr21 7599518 7599704 -27307866 + MER2 DNA MER2_type 23 209 -135 1491 185 0 11 chr21 7599804 7600074 -27307496 - MER82 DNA MER2_type -373 280 14 255 371 89 5 chr21 7600112 7600314 -27307256 + L1MEd LINE L1 115 333 -5786 2672 29 7 0 chr21 7600402 7600710 -27306860 + AluY SINE Alu 2 311 0 299 314 90 6 chr21 7600806 7600962 -27306608 + L1MEd LINE L1 506 674 -5445 34 65 0 0 chr21 7601062 7601124 -27306446 + AT_rich Low_complexity Low_complexity 1 62 0 304 320 115 51 chr21 7601172 7601425 -27306145 + L1MEd LINE L1 989 1257 -4862 1927 148 0 13 chr21 7601616 7601914 -27305656 + AluSx SINE Alu 1 294 -18 294 164 0 0 chr21 7601924 7601979 -27305591 + (CA)n Simple_repeat Simple_repeat 2 56 0 23 68 0 0 chr21 7602181 7602225 -27305345 + AT_rich Low_complexity Low_complexity 1 44 0 284 102 20 0 chr21 7602742 7602791 -27304779 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 204 135 0 0 chr21 7603376 7603413 -27304157 + (TTCC)n Simple_repeat Simple_repeat 3 39 0 1459 86 14 32 chr21 7603413 7603634 -27303936 - AluSx SINE Alu -32 280 64 348 313 68 6 chr21 7603634 7603797 -27303773 + L1M4 LINE L1 3911 4083 -2063 21 89 0 0 chr21 7603947 7604003 -27303567 + AT_rich Low_complexity Low_complexity 1 56 0 27 29 0 0 chr21 7604126 7604160 -27303410 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr21 7604206 7604234 -27303336 + AT_rich Low_complexity Low_complexity 1 28 0 346 304 103 16 chr21 7604367 7604551 -27303019 + L1M4 LINE L1 4741 4940 -1206 22 0 0 0 chr21 7604651 7604673 -27302897 + AT_rich Low_complexity Low_complexity 1 22 0 262 246 0 0 chr21 7604889 7604946 -27302624 - MIR SINE MIR -70 192 136 2162 95 0 10 chr21 7606130 7606426 -27301144 + AluSx SINE Alu 1 293 -19 2148 92 3 0 chr21 7607008 7607291 -27300279 + AluSg SINE Alu 1 284 -26 432 0 0 0 chr21 7607291 7607339 -27300231 + (CATA)n Simple_repeat Simple_repeat 2 49 0 277 176 12 35 chr21 7607590 7607675 -27299895 + CT-rich Low_complexity Low_complexity 2 84 0 340 276 0 0 chr21 7607838 7607914 -27299656 + L2 LINE L2 3238 3313 0 2201 161 31 0 chr21 7608070 7608461 -27299109 + L1PB4 LINE L1 5754 6156 0 206 387 77 18 chr21 7608538 7608760 -27298810 + L2 LINE L2 2828 3062 -251 502 186 0 110 chr21 7609104 7609249 -27298321 - MER3 DNA MER1_type 0 209 81 1562 195 96 3 chr21 7609319 7609653 -27297917 + MLT1A1 LTR MaLR 1 365 0 1493 235 104 46 chr21 7610309 7610790 -27296780 + MER67D LTR ERV1 3 511 -3 25 0 0 0 chr21 7610867 7610892 -27296678 + AT_rich Low_complexity Low_complexity 1 25 0 410 165 0 12 chr21 7611199 7611284 -27296286 + CT-rich Low_complexity Low_complexity 3 86 0 243 0 0 0 chr21 7611302 7611329 -27296241 + (TG)n Simple_repeat Simple_repeat 1 27 0 251 231 132 33 chr21 7612651 7612742 -27294828 + LTR48 LTR ERV1 353 452 -335 5552 148 32 7 chr21 7612742 7614239 -27293331 + L1PA10 LINE L1 2147 3605 -2563 312 27 0 0 chr21 7614239 7614276 -27293294 + (CAA)n Simple_repeat Simple_repeat 3 39 0 5552 148 32 7 chr21 7614276 7616287 -27291283 + L1PA10 LINE L1 3605 5819 -349 2265 118 6 11 chr21 7616350 7616698 -27290872 + L1PA10 LINE L1 5820 6165 -3 493 285 54 62 chr21 7617540 7617782 -27289788 + L1MC4 LINE L1 6746 6985 -1057 25 31 0 0 chr21 7618167 7618199 -27289371 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 7619172 7619195 -27288375 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr21 7619523 7619560 -27288010 + AT_rich Low_complexity Low_complexity 1 37 0 542 159 23 15 chr21 7620722 7620854 -27286716 + CT-rich Low_complexity Low_complexity 2 134 0 305 117 17 0 chr21 7621014 7621074 -27286496 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 57 0 0 chr21 7621255 7621290 -27286280 + AT_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr21 7622601 7622637 -27284933 + AT_rich Low_complexity Low_complexity 1 36 0 321 185 0 0 chr21 7623373 7623438 -27284132 + GA-rich Low_complexity Low_complexity 3 67 0 1917 188 6 0 chr21 7624917 7625258 -27282312 + MER61A LTR ERV1 1 343 0 219 286 0 0 chr21 7626553 7626616 -27280954 + (CATA)n Simple_repeat Simple_repeat 3 65 0 1881 153 3 13 chr21 7626648 7626962 -27280608 - AluSx SINE Alu -1 311 1 28 61 0 0 chr21 7627458 7627507 -27280063 + AT_rich Low_complexity Low_complexity 1 49 0 584 292 135 0 chr21 7627915 7628093 -27279477 + MER119 DNA MER1_type 4 205 -378 680 164 34 28 chr21 7628108 7628285 -27279285 + MER119 DNA MER1_type 329 506 -77 2136 126 7 7 chr21 7628287 7628589 -27278981 - AluSx SINE Alu -8 304 3 1648 221 9 14 chr21 7629020 7629369 -27278201 - MER65C LTR ERV1 -112 349 3 1551 196 3 25 chr21 7629922 7630238 -27277332 - AluJb SINE Alu -2 310 2 222 146 21 0 chr21 7630634 7630682 -27276888 + (TA)n Simple_repeat Simple_repeat 1 49 0 1427 239 98 25 chr21 7630893 7631291 -27276279 + MLT1F1 LTR MaLR 1 427 -140 23 33 0 0 chr21 7632497 7632527 -27275043 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr21 7633448 7633496 -27274074 + AT_rich Low_complexity Low_complexity 1 48 0 219 300 14 0 chr21 7633775 7633784 -27273786 + (TATATG)n Simple_repeat Simple_repeat 4 11 -63 189 0 0 0 chr21 7633784 7633805 -27273765 + (CA)n Simple_repeat Simple_repeat 2 22 0 219 300 14 0 chr21 7633805 7633865 -27273705 + (TATATG)n Simple_repeat Simple_repeat 11 74 0 1101 131 0 0 chr21 7633866 7634042 -27273528 + (TA)n Simple_repeat Simple_repeat 1 176 0 1749 161 64 25 chr21 7634042 7634402 -27273168 - THE1C LTR MaLR -1 374 1 349 316 58 0 chr21 7634492 7634717 -27272853 + L1P LINE L1 3673 3910 -2236 1063 138 35 42 chr21 7634718 7635002 -27272568 - THE1C LTR MaLR 0 375 1 5768 154 9 40 chr21 7635002 7636009 -27271561 - THE1C-int LTR MaLR 0 1580 605 850 309 25 37 chr21 7636055 7636463 -27271107 + L1ME LINE L1 3943 4345 -1801 599 240 22 44 chr21 7636485 7636714 -27270856 + L1ME LINE L1 5374 5597 -567 24 32 0 0 chr21 7637280 7637311 -27270259 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 7638046 7638069 -27269501 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 7639149 7639177 -27268393 + AT_rich Low_complexity Low_complexity 1 28 0 449 196 34 7 chr21 7639773 7639889 -27267681 - MLT1F1 LTR MaLR 0 567 474 1546 230 71 29 chr21 7642941 7643004 -27264566 - MLT2B1 LTR ERVL 0 515 456 369 43 0 0 chr21 7643004 7643051 -27264519 + (CA)n Simple_repeat Simple_repeat 2 48 0 1546 230 71 29 chr21 7643051 7643496 -27264074 - MLT2B1 LTR ERVL -59 456 1 211 192 39 0 chr21 7643683 7643735 -27263835 + (CTTAA)n Simple_repeat Simple_repeat 4 57 0 22 35 0 0 chr21 7643833 7643862 -27263708 + AT_rich Low_complexity Low_complexity 1 29 0 276 208 65 52 chr21 7644698 7644775 -27262795 - L2 LINE L2 0 3313 3236 1656 192 16 0 chr21 7645407 7645592 -27261978 - AluJb SINE Alu 0 312 119 252 0 0 0 chr21 7645592 7645620 -27261950 + (TTA)n Simple_repeat Simple_repeat 2 29 0 1656 192 16 0 chr21 7645620 7645741 -27261829 - AluJb SINE Alu -193 119 1 289 355 118 21 chr21 7646078 7646365 -27261205 + L2 LINE L2 2925 3239 -74 21 36 0 0 chr21 7646399 7646427 -27261143 + AT_rich Low_complexity Low_complexity 1 28 0 2740 10 0 3 chr21 7646615 7646923 -27260647 + AluYa5 SINE Alu 1 307 -4 4647 219 41 20 chr21 7647219 7648442 -27259128 - L1MC3 LINE L1 0 7785 6570 213 169 0 0 chr21 7648446 7648505 -27259065 + (TA)n Simple_repeat Simple_repeat 2 60 0 859 249 40 16 chr21 7648509 7648762 -27258808 - L1MC3 LINE L1 -1139 6646 6388 625 332 44 22 chr21 7648796 7649386 -27258184 - L1MCb LINE L1 -3942 2803 2201 601 276 15 49 chr21 7649410 7649576 -27257994 - L1MCb LINE L1 -4507 2139 1969 2674 29 0 0 chr21 7649576 7649882 -27257688 + AluYb8 SINE Alu 1 306 -12 601 276 15 49 chr21 7649882 7650079 -27257491 - L1MCb LINE L1 -4677 1969 1794 180 0 0 0 chr21 7650101 7650121 -27257449 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2959 242 44 49 chr21 7650189 7650268 -27257302 - L1MCb LINE L1 -4851 1194 1116 1540 138 0 0 chr21 7650268 7650485 -27257085 - AluSg/x SINE Alu -19 291 75 2959 242 44 49 chr21 7650485 7651063 -27256507 - L1MCb LINE L1 -4929 1116 889 1940 137 3 25 chr21 7651063 7651377 -27256193 + AluSx SINE Alu 1 307 -5 2959 242 44 49 chr21 7651377 7652221 -27255349 - L1MCb LINE L1 -5156 889 42 1956 150 34 47 chr21 7653880 7654093 -27253477 - THE1C LTR MaLR 0 375 168 2054 121 17 3 chr21 7654093 7654382 -27253188 + AluSx SINE Alu 3 295 -17 1956 150 34 47 chr21 7654382 7654548 -27253022 - THE1C LTR MaLR -207 168 1 23 0 0 0 chr21 7655086 7655109 -27252461 + AT_rich Low_complexity Low_complexity 1 23 0 2273 94 0 7 chr21 7659678 7659975 -27247595 + AluSg SINE Alu 3 297 -13 2056 143 0 0 chr21 7660630 7660937 -27246633 - AluSp SINE Alu -6 307 1 232 341 24 24 chr21 7661003 7661170 -27246400 - MLT1L LTR MaLR -312 303 137 1102 249 30 19 chr21 7663166 7663528 -27244042 + L1M4 LINE L1 2724 3089 -3057 1080 151 0 6 chr21 7663531 7663697 -27243873 + U1 snRNA snRNA 1 165 0 393 267 26 5 chr21 7663720 7663911 -27243659 + L1M4 LINE L1 3063 3257 -2889 443 222 0 6 chr21 7663914 7664094 -27243476 + (TA)n Simple_repeat Simple_repeat 2 180 0 819 154 0 0 chr21 7664116 7664285 -27243285 + (TA)n Simple_repeat Simple_repeat 2 170 0 313 245 0 43 chr21 7664291 7664385 -27243185 + L1MC4 LINE L1 6614 6703 -1339 1155 142 6 11 chr21 7664409 7664592 -27242978 - MER4B LTR ERV1 -5 605 424 375 211 13 0 chr21 7664594 7664670 -27242900 - MER4A LTR ERV1 -146 518 442 431 203 0 0 chr21 7664706 7664780 -27242790 - MER4A LTR ERV1 -219 445 372 452 183 0 12 chr21 7664833 7664915 -27242655 - MER4A LTR ERV1 -567 97 17 1293 306 39 6 chr21 7665002 7665547 -27242023 + L1M4 LINE L1 3330 3892 -2254 587 267 43 0 chr21 7665557 7665718 -27241852 + L1M4 LINE L1 3958 4125 -2021 2200 116 0 0 chr21 7665830 7666140 -27241430 + AluSg SINE Alu 1 310 0 2548 276 25 10 chr21 7666691 7667607 -27239963 + L1M4 LINE L1 2211 3140 -3006 1972 103 41 14 chr21 7668059 7668350 -27239220 - AluSx SINE Alu -13 299 1 189 74 0 0 chr21 7668452 7668479 -27239091 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 28 71 0 0 chr21 7669791 7669847 -27237723 + AT_rich Low_complexity Low_complexity 1 56 0 395 358 74 42 chr21 7670487 7670772 -27236798 + L1MEd LINE L1 124 417 -5702 2207 100 3 7 chr21 7671041 7671350 -27236220 - AluSg SINE Alu -2 308 1 215 159 23 0 chr21 7671526 7671570 -27236000 + A-rich Low_complexity Low_complexity 2 46 0 447 320 62 0 chr21 7672172 7672350 -27235220 + L1MEd LINE L1 2203 2391 -3738 24 32 0 0 chr21 7672470 7672501 -27235069 + AT_rich Low_complexity Low_complexity 1 31 0 470 329 62 40 chr21 7672601 7672972 -27234598 - L1ME3A LINE L1 -107 6063 5685 1052 276 70 17 chr21 7672999 7673354 -27234216 - L1ME3A LINE L1 -540 5630 5257 22 35 0 0 chr21 7673446 7673475 -27234095 + AT_rich Low_complexity Low_complexity 1 29 0 26 74 0 0 chr21 7673544 7673598 -27233972 + AT_rich Low_complexity Low_complexity 1 54 0 1522 198 3 20 chr21 7673598 7673891 -27233679 - AluJo SINE Alu -24 288 1 620 291 65 28 chr21 7673981 7674441 -27233129 - L1ME3A LINE L1 -1250 4896 4420 1024 208 60 13 chr21 7674876 7675193 -27232377 + L1MEd LINE L1 2960 3291 -2838 1629 203 25 6 chr21 7675210 7675570 -27232000 + L1MEd LINE L1 3657 4023 -2106 21 57 0 0 chr21 7675571 7675606 -27231964 + AT_rich Low_complexity Low_complexity 1 35 0 281 26 26 0 chr21 7675850 7675888 -27231682 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 22 70 0 0 chr21 7676496 7676539 -27231031 + AT_rich Low_complexity Low_complexity 1 43 0 1932 100 3 97 chr21 7676745 7677076 -27230494 - AluSx SINE Alu -2 300 1 4045 117 14 11 chr21 7681113 7681755 -27225815 - L1PA13 LINE L1 0 6163 5520 372 47 31 16 chr21 7682844 7682908 -27224662 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 1134 132 0 0 chr21 7683515 7683682 -27223888 + AluSg/x SINE Alu 131 297 -13 282 188 0 0 chr21 7683725 7683773 -27223797 + MLT1F LTR MaLR 489 536 -6 25 0 0 0 chr21 7684882 7684907 -27222663 + AT_rich Low_complexity Low_complexity 1 25 0 180 77 0 0 chr21 7685271 7685297 -27222273 + (TAGA)n Simple_repeat Simple_repeat 1 26 0 31 58 0 0 chr21 7685336 7685388 -27222182 + AT_rich Low_complexity Low_complexity 1 52 0 207 0 0 0 chr21 7685903 7685926 -27221644 + (TA)n Simple_repeat Simple_repeat 1 23 0 23 0 0 0 chr21 7686339 7686362 -27221208 + AT_rich Low_complexity Low_complexity 1 23 0 607 325 25 17 chr21 7687236 7687473 -27220097 + L2 LINE L2 2205 2443 -871 510 240 56 28 chr21 7687547 7687726 -27219844 + MLT1J1 LTR MaLR 96 279 -167 324 334 114 43 chr21 7687898 7688248 -27219322 + L2 LINE L2 2500 2874 -440 385 309 119 41 chr21 7688570 7688865 -27218705 - L1ME LINE L1 -534 5636 5319 5146 153 22 35 chr21 7689227 7690377 -27217193 + L1PA15 LINE L1 5007 6152 -13 2095 127 7 0 chr21 7690514 7690813 -27216757 - AluSx SINE Alu -11 301 1 441 177 25 0 chr21 7690833 7690912 -27216658 - AluY SINE Alu -16 295 215 388 285 54 16 chr21 7692084 7692270 -27215300 - MER46C DNA MER2_type -145 193 1 30 45 0 0 chr21 7692481 7692525 -27215045 + AT_rich Low_complexity Low_complexity 1 44 0 1623 226 8 8 chr21 7693333 7693696 -27213874 - MLT1A1 LTR MaLR 0 365 3 28 48 0 0 chr21 7693732 7693774 -27213796 + AT_rich Low_complexity Low_complexity 1 42 0 2744 19 0 0 chr21 7693801 7694114 -27213456 + AluYb8 SINE Alu 1 313 -5 6996 40 1 0 chr21 7694276 7695120 -27212450 - L1PA4 LINE L1 -1 6154 5310 4890 34 3 0 chr21 7695115 7695712 -27211858 + L1PA4 LINE L1 4711 5309 -837 667 208 8 0 chr21 7696420 7696540 -27211030 - FLAM_A SINE Alu -16 126 6 21 36 0 0 chr21 7697137 7697165 -27210405 + AT_rich Low_complexity Low_complexity 1 28 0 697 304 39 0 chr21 7698033 7698240 -27209330 + MER58C DNA MER1_type 1 215 0 1939 221 34 23 chr21 7698252 7698782 -27208788 - L1MB8 LINE L1 0 6178 5643 407 270 52 28 chr21 7698794 7699005 -27208565 - L1ME LINE L1 -801 5345 5130 829 206 0 0 chr21 7699022 7699187 -27208383 - L1ME LINE L1 -1075 5071 4907 638 196 67 63 chr21 7702332 7702570 -27205000 + MLT1A1 LTR MaLR 1 301 -95 432 254 45 9 chr21 7702947 7703116 -27204454 + FLAM_A SINE Alu 1 173 0 1123 330 59 11 chr21 7704225 7704786 -27202784 + L2 LINE L2 2061 2648 -666 456 308 120 57 chr21 7704843 7705291 -27202279 + L2 LINE L2 2722 3212 -101 1851 246 105 20 chr21 7705291 7705843 -27201727 - MLT1E2 LTR MaLR 0 626 28 258 363 45 72 chr21 7706831 7707206 -27200364 - L2 LINE L2 -383 2931 2567 25 31 0 0 chr21 7707344 7707376 -27200194 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 7708846 7708885 -27198685 + AT_rich Low_complexity Low_complexity 1 39 0 1576 187 26 0 chr21 7708885 7709158 -27198412 - AluJo SINE Alu -25 287 8 23 0 0 0 chr21 7711440 7711463 -27196107 + AT_rich Low_complexity Low_complexity 1 23 0 271 292 9 19 chr21 7711469 7711575 -27195995 + GA-rich Low_complexity Low_complexity 2 106 0 21 0 0 0 chr21 7711886 7711907 -27195663 + AT_rich Low_complexity Low_complexity 1 21 0 582 198 26 9 chr21 7711909 7712025 -27195545 - FLAM_A SINE Alu -15 118 1 2031 148 0 0 chr21 7712635 7712933 -27194637 + AluSx SINE Alu 3 300 -12 22 0 0 0 chr21 7713063 7713085 -27194485 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr21 7715044 7715082 -27192488 + AT_rich Low_complexity Low_complexity 1 38 0 353 181 49 62 chr21 7715161 7715305 -27192265 - MER69 DNA AcHobo -7 2519 2378 21 36 0 0 chr21 7715774 7715802 -27191768 + AT_rich Low_complexity Low_complexity 1 28 0 1497 175 45 78 chr21 7717103 7717502 -27190068 - MLT1B LTR MaLR 0 390 5 225 200 0 0 chr21 7717632 7717672 -27189898 + (CATA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr21 7717869 7717893 -27189677 + AT_rich Low_complexity Low_complexity 1 24 0 2271 89 3 3 chr21 7718335 7718639 -27188931 + AluSp SINE Alu 1 304 -9 1868 188 9 6 chr21 7718935 7719280 -27188290 - MER7A DNA MER2_type -1 345 2 260 242 0 16 chr21 7720227 7720289 -27187281 - MLT2D LTR ERVL -353 61 1 923 237 40 18 chr21 7721364 7721588 -27185982 + MLT2B1 LTR ERVL 1 229 -291 185 0 40 0 chr21 7721592 7721617 -27185953 + (TC)n Simple_repeat Simple_repeat 1 26 0 261 246 14 14 chr21 7721636 7721705 -27185865 + MLT2B1 LTR ERVL 386 454 -66 405 81 0 0 chr21 7721705 7721767 -27185803 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 258 136 0 0 chr21 7723655 7723699 -27183871 + (CA)n Simple_repeat Simple_repeat 1 44 0 2311 156 4 31 chr21 7723777 7724227 -27183343 + L1MA4A LINE L1 5864 6301 -2 220 246 0 16 chr21 7725434 7725495 -27182075 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr21 7725968 7726008 -27181562 + AT_rich Low_complexity Low_complexity 1 40 0 315 0 0 0 chr21 7726586 7726621 -27180949 + (CA)n Simple_repeat Simple_repeat 2 36 0 288 0 0 0 chr21 7726645 7726677 -27180893 + (CATATA)n Simple_repeat Simple_repeat 5 36 0 873 247 74 39 chr21 7726678 7726967 -27180603 + L1MC4 LINE L1 6648 6783 -1002 1653 188 33 18 chr21 7726967 7727049 -27180521 - MER2 DNA MER2_type 0 344 265 2251 101 0 16 chr21 7727049 7727367 -27180203 + AluSp SINE Alu 1 313 0 1653 188 33 18 chr21 7727367 7727620 -27179950 - MER2 DNA MER2_type -79 265 4 575 236 0 0 chr21 7727805 7727915 -27179655 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 232 190 40 10 chr21 7728065 7728165 -27179405 + (TA)n Simple_repeat Simple_repeat 1 103 0 296 355 47 33 chr21 7728945 7729156 -27178414 - MLT1J LTR MaLR -115 396 183 543 302 146 40 chr21 7729560 7729937 -27177633 - HAL1 LINE L1 -860 1647 1231 1793 178 98 25 chr21 7729965 7730364 -27177206 + MSTA LTR MaLR 1 428 0 8492 161 6 49 chr21 7730366 7730741 -27176829 + MSTA-int LTR MaLR 3 393 -1187 2187 81 0 3 chr21 7730741 7731052 -27176518 - AluY SINE Alu 0 310 1 8492 161 6 49 chr21 7731052 7732325 -27175245 + MSTA-int LTR MaLR 393 1580 0 1863 157 152 11 chr21 7732325 7732700 -27174870 + MSTA LTR MaLR 1 428 0 1436 184 92 3 chr21 7733981 7734297 -27173273 + MER2 DNA MER2_type 1 344 0 276 273 66 16 chr21 7734523 7734644 -27172926 + MIR SINE MIR 78 204 -58 34 55 0 0 chr21 7734714 7734769 -27172801 + AT_rich Low_complexity Low_complexity 1 55 0 326 398 59 0 chr21 7735605 7735723 -27171847 - L2 LINE L2 0 3272 3148 2472 59 3 0 chr21 7735870 7736175 -27171395 - AluY SINE Alu -5 306 1 246 340 0 39 chr21 7736329 7736432 -27171138 - MIR SINE MIR -116 146 48 2054 203 3 0 chr21 7736432 7736821 -27170749 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr21 7737356 7737380 -27170190 + AT_rich Low_complexity Low_complexity 1 24 0 1091 145 0 0 chr21 7737461 7737627 -27169943 - AluSp SINE Alu -11 302 137 2163 175 58 17 chr21 7739581 7739992 -27167578 + MSTA LTR MaLR 1 428 0 32 43 0 0 chr21 7741911 7741957 -27165613 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr21 7742125 7742147 -27165423 + AT_rich Low_complexity Low_complexity 1 22 0 29687 117 8 9 chr21 7742236 7748693 -27158877 + L1PA7 LINE L1 1 6466 -3 235 296 77 42 chr21 7748722 7748950 -27158620 - MLT1L LTR MaLR -79 536 207 2778 13 0 0 chr21 7749001 7749308 -27158262 - AluYb8 SINE Alu -11 307 1 283 342 61 0 chr21 7749320 7749434 -27158136 - MLT1L LTR MaLR -372 243 123 257 318 0 0 chr21 7749624 7749687 -27157883 - MIR SINE MIR -152 110 48 2028 293 33 5 chr21 7751588 7752188 -27155382 - MLT2F LTR ERVL -44 619 3 299 318 40 8 chr21 7752278 7752404 -27155166 - L1ME LINE L1 -707 5455 5326 31 92 0 0 chr21 7752728 7752815 -27154755 + AT_rich Low_complexity Low_complexity 1 87 0 2617 231 58 67 chr21 7754319 7755189 -27152381 - MER21B LTR ERV1 -1 862 1 866 175 30 98 chr21 7756387 7756621 -27150949 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 7756684 7756712 -27150858 + AT_rich Low_complexity Low_complexity 1 28 0 632 280 37 26 chr21 7756992 7757527 -27150043 + L1M4 LINE L1 2117 2698 -3448 1637 212 3 0 chr21 7758001 7758307 -27149263 + AluJb SINE Alu 1 307 -5 23 78 0 0 chr21 7758364 7758415 -27149155 + AT_rich Low_complexity Low_complexity 1 51 0 330 322 7 34 chr21 7759215 7759364 -27148206 - MIR3 SINE MIR -4 204 60 2045 132 3 0 chr21 7760530 7760825 -27146745 + AluSg SINE Alu 1 296 -14 2068 169 9 0 chr21 7761941 7762285 -27145285 - MER7A DNA MER2_type 0 346 2 269 247 79 11 chr21 7763290 7763379 -27144191 + MIR SINE MIR 95 189 -73 186 43 0 0 chr21 7763553 7763576 -27143994 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 2061 100 7 0 chr21 7763576 7763855 -27143715 - AluSq SINE Alu -32 281 1 24 32 0 0 chr21 7764068 7764099 -27143471 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr21 7765137 7765157 -27142413 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 11144 188 24 27 chr21 7765670 7769305 -27138265 + L1PA15 LINE L1 2544 6163 -2 439 277 13 26 chr21 7770049 7770204 -27137366 - MLT1E LTR MaLR -2 591 439 956 163 121 0 chr21 7770207 7770397 -27137173 + MER46B DNA MER2_type 3 90 -146 21 36 0 0 chr21 7772789 7772817 -27134753 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr21 7774725 7774755 -27132815 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 7774819 7774843 -27132727 + AT_rich Low_complexity Low_complexity 1 24 0 1456 192 33 59 chr21 7775273 7775316 -27132254 - MLT1B LTR MaLR 0 390 347 1971 160 33 30 chr21 7775316 7775679 -27131891 - THE1B LTR MaLR 0 364 1 1456 192 33 59 chr21 7775679 7776025 -27131545 - MLT1B LTR MaLR -43 347 11 1511 212 24 17 chr21 7776052 7776340 -27131230 + AluJo SINE Alu 3 292 -20 1056 207 66 77 chr21 7776693 7777070 -27130500 + MER93b LTR ERV1 1 373 0 2346 55 7 35 chr21 7777292 7777602 -27129968 + AluY SINE Alu 1 301 -10 1284 175 30 26 chr21 7777733 7778001 -27129569 - AluSx SINE Alu -4 308 40 288 130 0 0 chr21 7779262 7779308 -27128262 + (TA)n Simple_repeat Simple_repeat 2 47 0 1265 223 32 8 chr21 7779438 7779895 -27127675 + MLT1D LTR MaLR 1 505 0 275 49 24 0 chr21 7779967 7780008 -27127562 + (CA)n Simple_repeat Simple_repeat 1 42 0 204 40 0 0 chr21 7780007 7780032 -27127538 + (GA)n Simple_repeat Simple_repeat 2 26 0 1716 175 57 14 chr21 7780116 7780465 -27127105 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr21 7781316 7781344 -27126226 + AT_rich Low_complexity Low_complexity 1 28 0 576 160 50 25 chr21 7781620 7781739 -27125831 + MER34 LTR ERV1 24 145 -397 23 0 0 0 chr21 7781832 7781855 -27125715 + AT_rich Low_complexity Low_complexity 1 23 0 1961 282 28 39 chr21 7781896 7782308 -27125262 + L1ME1 LINE L1 131 533 -5863 1399 246 86 44 chr21 7782308 7782807 -27124763 - MLT2B1 LTR ERVL 0 520 1 1961 282 28 39 chr21 7782807 7783121 -27124449 + L1ME1 LINE L1 533 849 -5547 325 281 61 57 chr21 7783207 7783699 -27123871 + L1ME1 LINE L1 996 1489 -4907 1872 240 81 52 chr21 7783728 7784677 -27122893 + L1ME1 LINE L1 4684 5689 -546 2371 61 0 48 chr21 7784677 7784988 -27122582 - AluY SINE Alu -15 296 1 1872 240 81 52 chr21 7784988 7785546 -27122024 + L1ME1 LINE L1 5689 6230 -5 1539 139 79 60 chr21 7787077 7787445 -27120125 - THE1C LTR MaLR 0 375 1 356 324 66 7 chr21 7787655 7787791 -27119779 + MLT1H1 LTR MaLR 24 167 -388 518 250 50 38 chr21 7787914 7788074 -27119496 + MLT1G3 LTR MaLR 369 530 0 3209 121 26 12 chr21 7789042 7789546 -27118024 + MER9 LTR ERVK 1 511 0 21 36 0 0 chr21 7790248 7790276 -27117294 + AT_rich Low_complexity Low_complexity 1 28 0 268 334 45 19 chr21 7790310 7790535 -27117035 + MLT1G LTR MaLR 62 290 -259 441 0 0 0 chr21 7790559 7790608 -27116962 + (GA)n Simple_repeat Simple_repeat 2 50 0 454 244 64 26 chr21 7790642 7790798 -27116772 + MLT1G LTR MaLR 419 580 -10 1327 206 150 3 chr21 7791005 7791345 -27116225 + MLT1B LTR MaLR 1 390 0 226 299 0 0 chr21 7791521 7791608 -27115962 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 255 79 0 0 chr21 7791610 7791648 -27115922 + (TG)n Simple_repeat Simple_repeat 1 38 0 2012 115 0 43 chr21 7792187 7792492 -27115078 + AluSq SINE Alu 1 292 -21 22 80 0 0 chr21 7793082 7793132 -27114438 + AT_rich Low_complexity Low_complexity 1 50 0 201 122 49 0 chr21 7793944 7793985 -27113585 + (TTA)n Simple_repeat Simple_repeat 2 44 0 235 205 27 18 chr21 7794260 7794372 -27113198 + (TA)n Simple_repeat Simple_repeat 2 114 0 201 184 18 35 chr21 7794394 7794508 -27113062 + (TA)n Simple_repeat Simple_repeat 1 112 0 2331 142 13 8 chr21 7794510 7794883 -27112687 - THE1C LTR MaLR 0 375 1 8888 142 59 7 chr21 7794883 7796384 -27111186 - THE1C-int LTR MaLR 0 1580 1 1948 161 13 3 chr21 7796427 7796732 -27110838 + AluSx SINE Alu 3 310 -2 1927 143 90 18 chr21 7796756 7797091 -27110479 - THE1B LTR MaLR 0 364 6 11070 112 4 3 chr21 7797096 7798673 -27108897 - THE1B-int LTR MaLR -1 1579 1 1902 121 81 29 chr21 7798673 7799019 -27108551 - THE1B LTR MaLR 0 364 1 2322 133 0 0 chr21 7799019 7799350 -27108220 - THE1C LTR MaLR -44 331 1 2401 75 0 0 chr21 7800723 7801018 -27106552 + AluY SINE Alu 1 295 -16 35 0 0 0 chr21 7801018 7801053 -27106517 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr21 7802234 7802262 -27105308 + AT_rich Low_complexity Low_complexity 1 28 0 1770 182 0 3 chr21 7803105 7803396 -27104174 + AluJb SINE Alu 1 290 -22 24 67 0 0 chr21 7803449 7803494 -27104076 + AT_rich Low_complexity Low_complexity 1 45 0 24 0 0 0 chr21 7803975 7803999 -27103571 + AT_rich Low_complexity Low_complexity 1 24 0 257 51 26 0 chr21 7804559 7804598 -27102972 + (TG)n Simple_repeat Simple_repeat 2 41 0 1352 199 49 120 chr21 7806097 7806705 -27100865 - MER34B LTR ERV1 0 565 1 405 0 0 0 chr21 7807263 7807308 -27100262 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr21 7807865 7807900 -27099670 + AT_rich Low_complexity Low_complexity 1 35 0 484 238 12 62 chr21 7808781 7809015 -27098555 + MER58 DNA MER1_type 1 2420 0 1143 228 8 12 chr21 7809233 7809483 -27098087 - MLT1D LTR MaLR -4 501 253 794 215 56 53 chr21 7809510 7809794 -27097776 - MLT1D LTR MaLR -220 285 1 2702 151 40 17 chr21 7810022 7810565 -27097005 + LTR38 LTR ERV1 1 556 0 560 291 64 30 chr21 7811040 7811301 -27096269 + L1ME LINE L1 560 836 -5560 259 312 53 53 chr21 7811425 7811726 -27095844 + L1ME LINE L1 779 1079 -5330 5011 116 128 33 chr21 7811808 7813194 -27094376 + pTR5 LTR ERV1 742 2438 0 2093 230 77 2 chr21 7813669 7814108 -27093462 + MER70A LRE ERV 1 472 0 26 30 0 0 chr21 7815179 7815212 -27092358 + AT_rich Low_complexity Low_complexity 1 33 0 251 179 0 0 chr21 7815692 7815731 -27091839 + AluSp/q SINE Alu 228 266 -37 240 111 0 0 chr21 7815868 7815904 -27091666 + (A)n Simple_repeat Simple_repeat 1 36 0 40 73 0 0 chr21 7816516 7816598 -27090972 + AT_rich Low_complexity Low_complexity 1 82 0 540 207 6 77 chr21 7816712 7816835 -27090735 + L1MB8 LINE L1 6021 6130 -48 3288 164 2 22 chr21 7816835 7817372 -27090198 + MER1A DNA MER1_type 1 526 -1 540 207 6 77 chr21 7817372 7817417 -27090153 + L1MB8 LINE L1 6130 6177 -1 26 30 0 0 chr21 7817484 7817517 -27090053 + AT_rich Low_complexity Low_complexity 1 33 0 231 132 26 0 chr21 7817782 7817820 -27089750 - LTR33A LTR ERVL 0 523 485 1004 256 100 94 chr21 7817789 7818301 -27089269 - LTR41 LTR ERVL -6 767 253 521 335 21 46 chr21 7819046 7819330 -27088240 + LTR16A LTR ERVL 57 333 -117 2337 145 49 5 chr21 7819330 7819738 -27087832 - MSTA LTR MaLR 0 428 3 192 152 0 0 chr21 7819874 7819907 -27087663 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr21 7820294 7820315 -27087255 + AT_rich Low_complexity Low_complexity 1 21 0 12512 232 37 29 chr21 7820630 7823228 -27084342 - L1MA4 LINE L1 -19 7302 4728 423 0 0 0 chr21 7823228 7823275 -27084295 + (TG)n Simple_repeat Simple_repeat 2 48 0 12512 232 37 29 chr21 7823275 7825755 -27081815 - L1MA4 LINE L1 -2593 4728 2110 189 0 0 0 chr21 7825755 7825776 -27081794 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 12512 232 37 29 chr21 7825776 7827596 -27079974 - L1MA4 LINE L1 -5211 2110 307 450 259 121 0 chr21 7827598 7827714 -27079856 - L1M2a LINE L1 -6467 701 572 4200 186 27 30 chr21 7827910 7828823 -27078747 + L1MC1 LINE L1 5406 6316 -17 1670 158 100 0 chr21 7829052 7829331 -27078239 + AluSx SINE Alu 1 307 -5 249 267 60 127 chr21 7829390 7829540 -27078030 + MIR3 SINE MIR 39 178 -30 729 162 7 7 chr21 7829841 7829983 -27077587 + L1MA10 LINE L1 6191 6332 -2 2221 112 0 3 chr21 7829991 7830287 -27077283 + AluSx SINE Alu 1 295 -17 3632 194 20 9 chr21 7832522 7833348 -27074222 + L1PA15 LINE L1 1534 2376 -4421 5301 190 8 7 chr21 7833354 7835001 -27072569 + L1PA15 LINE L1 4906 6553 -263 1399 179 0 8 chr21 7835168 7835425 -27072145 + L1PA15 LINE L1 6557 6811 -5 234 0 0 0 chr21 7837337 7837363 -27070207 + (GA)n Simple_repeat Simple_repeat 1 26 0 25 102 0 0 chr21 7838610 7838698 -27068872 + AT_rich Low_complexity Low_complexity 1 88 0 1582 190 7 23 chr21 7839010 7839315 -27068255 - AluJo SINE Alu -12 300 1 1944 188 11 0 chr21 7839435 7839796 -27067774 - MER47A DNA MER2_type 0 366 2 1898 249 69 27 chr21 7840011 7840574 -27066996 - MLT1E LTR MaLR 0 593 7 534 297 91 96 chr21 7842582 7842882 -27064688 - L2 LINE L2 -7 3306 3007 2288 113 0 0 chr21 7842882 7843191 -27064379 + AluSg SINE Alu 1 309 -1 534 297 91 96 chr21 7843191 7843307 -27064263 - L2 LINE L2 -306 3007 2892 1668 211 83 5 chr21 7843374 7843783 -27063787 + MSTB1 LTR MaLR 1 432 0 189 281 0 16 chr21 7843783 7843847 -27063723 - L2 LINE L2 -386 2886 2824 21 0 0 0 chr21 7844883 7844904 -27062666 + AT_rich Low_complexity Low_complexity 1 21 0 4585 157 48 62 chr21 7845196 7846215 -27061355 - L1MC1 LINE L1 0 6333 5329 726 270 13 17 chr21 7846217 7846450 -27061120 - L1MC1 LINE L1 -864 5282 5051 25 31 0 0 chr21 7846488 7846520 -27061050 + AT_rich Low_complexity Low_complexity 1 32 0 2032 119 0 3 chr21 7849734 7850019 -27057551 + AluSg SINE Alu 13 296 -14 818 266 16 4 chr21 7850446 7850698 -27056872 + L1MA9 LINE L1 6020 6274 -38 36 23 0 0 chr21 7851086 7851129 -27056441 + AT_rich Low_complexity Low_complexity 1 43 0 31 0 0 0 chr21 7851197 7851228 -27056342 + AT_rich Low_complexity Low_complexity 1 31 0 294 29 0 0 chr21 7851486 7851521 -27056049 + (CA)n Simple_repeat Simple_repeat 2 36 0 2449 43 0 0 chr21 7851550 7851855 -27055715 + AluY SINE Alu 1 305 0 22 56 0 0 chr21 7852063 7852099 -27055471 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr21 7852159 7852182 -27055388 + AT_rich Low_complexity Low_complexity 1 23 0 22 94 0 0 chr21 7852415 7852479 -27055091 + AT_rich Low_complexity Low_complexity 1 64 0 25 31 0 0 chr21 7852652 7852684 -27054886 + AT_rich Low_complexity Low_complexity 1 32 0 244 217 0 14 chr21 7852986 7853055 -27054515 + A-rich Low_complexity Low_complexity 2 69 0 315 214 0 0 chr21 7853140 7853210 -27054360 + (TA)n Simple_repeat Simple_repeat 1 70 0 196 286 75 53 chr21 7853661 7853794 -27053776 - MIR3 SINE MIR -65 143 8 1545 179 81 17 chr21 7853801 7854160 -27053410 + MLT1B LTR MaLR 1 423 -5 4024 47 0 6 chr21 7854236 7854745 -27052825 - L1PA5 LINE L1 -5 6149 5644 1890 59 0 0 chr21 7855344 7855581 -27051989 - L1PA5 LINE L1 -2 6152 5916 28 48 0 0 chr21 7857152 7857194 -27050376 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr21 7857461 7857504 -27050066 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr21 7858014 7858038 -27049532 + AT_rich Low_complexity Low_complexity 1 24 0 1924 121 28 0 chr21 7858275 7858565 -27049005 + L1PA11 LINE L1 5877 6174 0 854 245 98 26 chr21 7858574 7858880 -27048690 + LTR50 LTR ERVL 3 330 -465 256 231 46 0 chr21 7859115 7859180 -27048390 + LTR50 LTR ERVL 728 795 0 245 299 109 40 chr21 7859464 7859638 -27047932 + L2 LINE L2 3128 3313 0 682 141 118 24 chr21 7859680 7859850 -27047720 + MER53 DNA DNA 4 189 0 1596 148 48 9 chr21 7860537 7861078 -27046492 - LTR24C LTR ERV1 0 635 1 831 239 34 90 chr21 7861192 7861400 -27046170 - L2 LINE L2 -858 2456 2275 2353 134 16 6 chr21 7861400 7861765 -27045805 + MER83C LTR ERV1 1 369 -4 831 239 34 90 chr21 7861765 7861911 -27045659 - L2 LINE L2 -1039 2275 2122 2357 85 0 0 chr21 7861919 7862212 -27045358 - AluY SINE Alu -18 293 1 1782 238 75 35 chr21 7862261 7862355 -27045215 + MER21B LTR ERV1 1 90 -773 225 23 23 45 chr21 7862355 7862399 -27045171 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1782 238 75 35 chr21 7862399 7862784 -27044786 + MER21B LTR ERV1 90 499 -364 854 192 5 55 chr21 7862785 7862807 -27044763 - L1MD3 LINE L1 -201 7794 7772 3985 84 55 9 chr21 7862807 7863388 -27044182 + LTR14B LTR ERVK 1 608 0 854 192 5 55 chr21 7863388 7863584 -27043986 - L1MD3 LINE L1 -223 7772 7587 849 195 113 6 chr21 7863655 7863854 -27043716 + LTR49 LTR ERV1 3 213 -382 993 162 11 47 chr21 7863854 7864045 -27043525 - THE1B LTR MaLR 0 364 181 348 158 59 50 chr21 7864093 7864194 -27043376 - LTR48 LTR ERV1 -56 731 630 1196 190 47 43 chr21 7864207 7864486 -27043084 - AluJo SINE Alu -10 302 23 1078 165 53 138 chr21 7864511 7864887 -27042683 - LTR49 LTR ERV1 -251 344 1 770 240 63 45 chr21 7864890 7865111 -27042459 + MER21A LTR ERV1 621 845 -86 1472 195 75 21 chr21 7865218 7865362 -27042208 - LTR49 LTR ERV1 -241 354 219 2309 133 8 22 chr21 7865362 7865731 -27041839 + THE1B LTR MaLR 1 364 0 1472 195 75 21 chr21 7865731 7865920 -27041650 - LTR49 LTR ERV1 -376 219 3 939 195 35 22 chr21 7865964 7866262 -27041308 + L1MC3 LINE L1 7375 7808 -154 1840 179 27 42 chr21 7866287 7866689 -27040881 + MER57A LTR ERV1 8 403 0 198 0 0 0 chr21 7867568 7867590 -27039980 + (TC)n Simple_repeat Simple_repeat 1 22 0 288 0 0 0 chr21 7867589 7867621 -27039949 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 0 0 0 chr21 7868549 7868573 -27038997 + AT_rich Low_complexity Low_complexity 1 24 0 461 61 0 15 chr21 7869488 7869554 -27038016 + (TAGA)n Simple_repeat Simple_repeat 4 68 0 2232 192 72 82 chr21 7869839 7870533 -27037037 + LTR8 LTR ERV1 4 690 -1 25 0 0 0 chr21 7870756 7870781 -27036789 + AT_rich Low_complexity Low_complexity 1 25 0 201 74 0 0 chr21 7871659 7871686 -27035884 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 30 0 0 chr21 7873760 7873793 -27033777 + AT_rich Low_complexity Low_complexity 1 33 0 2976 119 26 2 chr21 7874030 7874484 -27033086 - MER4C LTR ERV1 0 465 1 503 244 99 74 chr21 7874546 7874881 -27032689 - LTR48B LTR ERV1 -13 774 449 2399 108 5 24 chr21 7874881 7875252 -27032318 - THE1B LTR MaLR 0 364 1 503 244 99 74 chr21 7875252 7875361 -27032209 - LTR48B LTR ERV1 -338 449 122 1603 228 82 41 chr21 7875520 7876011 -27031559 - MER67D LTR ERV1 -2 512 2 1997 137 0 0 chr21 7876570 7876876 -27030694 - AluSx SINE Alu 0 306 1 1881 266 28 19 chr21 7876879 7877582 -27029988 - L1MEc LINE L1 -3327 2888 2179 1067 236 51 42 chr21 7877582 7877895 -27029675 - L1MEc LINE L1 -4178 2218 1903 876 266 81 26 chr21 7878096 7878655 -27028915 - L1MEc LINE L1 -4836 1310 832 639 292 29 12 chr21 7879063 7879306 -27028264 - L1MEc LINE L1 -6090 306 60 517 271 0 71 chr21 7879627 7879688 -27027882 + MIR SINE MIR 72 136 -126 2416 56 0 3 chr21 7879688 7879994 -27027576 - AluY SINE Alu -6 305 1 517 271 0 71 chr21 7879994 7880102 -27027468 + MIR SINE MIR 136 229 -33 27 0 0 0 chr21 7881334 7881361 -27026209 + AT_rich Low_complexity Low_complexity 1 27 0 1400 184 36 53 chr21 7881722 7882026 -27025544 - AluJo SINE Alu -1 301 3 362 226 39 20 chr21 7882067 7882169 -27025401 + L1ME1 LINE L1 6060 6163 -3 201 108 0 0 chr21 7882200 7882237 -27025333 + (CAT)n Simple_repeat Simple_repeat 1 37 0 186 43 0 0 chr21 7882421 7882444 -27025126 + (CA)n Simple_repeat Simple_repeat 2 24 0 521 305 49 25 chr21 7882688 7882891 -27024679 + MIR SINE MIR 1 208 -54 256 271 0 0 chr21 7884399 7884458 -27023112 + MIR3 SINE MIR 120 178 -30 1009 325 29 16 chr21 7885016 7885401 -27022169 + REP3 LTR ERV 1 390 -172 22 35 0 0 chr21 7885446 7885475 -27022095 + AT_rich Low_complexity Low_complexity 1 29 0 1442 239 35 21 chr21 7885743 7886120 -27021450 - MER70A LTR ERVL -14 458 77 257 192 45 13 chr21 7886120 7886354 -27021216 + (TA)n Simple_repeat Simple_repeat 1 241 0 1755 190 81 0 chr21 7886572 7886904 -27020666 + MLT1A1 LTR MaLR 7 365 0 1354 311 42 24 chr21 7886948 7886998 -27020572 + L1MEc LINE L1 204 252 -6144 1877 175 67 3 chr21 7886998 7887370 -27020200 - MSTD LTR MaLR 0 396 1 1354 311 42 24 chr21 7887370 7887872 -27019698 + L1MEc LINE L1 252 766 -5630 25 31 0 0 chr21 7888374 7888406 -27019164 + AT_rich Low_complexity Low_complexity 1 32 0 1497 275 58 52 chr21 7888542 7889312 -27018258 + L1ME1 LINE L1 5295 6069 -97 409 217 12 0 chr21 7890237 7890320 -27017250 - MIR SINE MIR -78 184 101 2625 180 25 65 chr21 7890384 7890798 -27016772 - MER6A DNA MER2_type -260 605 223 414 0 0 0 chr21 7890798 7890844 -27016726 + (CA)n Simple_repeat Simple_repeat 1 46 0 2625 180 25 65 chr21 7890844 7891057 -27016513 - MER6A DNA MER2_type -642 223 3 2318 54 0 35 chr21 7892488 7892803 -27014767 - AluY SINE Alu -7 304 1 464 282 30 0 chr21 7893049 7893180 -27014390 + MIR3 SINE MIR 69 203 -5 213 196 0 0 chr21 7896264 7896310 -27011260 + (TA)n Simple_repeat Simple_repeat 1 46 0 276 239 0 30 chr21 7896705 7896772 -27010798 - L2 LINE L2 -4 3309 3245 1339 197 47 3 chr21 7897111 7897431 -27010139 - Ricksha DNA DNA -7 3247 2914 2114 118 0 16 chr21 7897433 7897748 -27009822 + AluSq SINE Alu 1 310 -3 207 119 95 0 chr21 7897748 7897790 -27009780 + GA-rich Low_complexity Low_complexity 1 46 0 5854 175 28 6 chr21 7897790 7897826 -27009744 - Ricksha DNA DNA -313 2933 2899 204 67 0 0 chr21 7897826 7897856 -27009714 + (TA)n Simple_repeat Simple_repeat 1 30 0 5854 175 28 6 chr21 7897856 7898909 -27008661 - Ricksha DNA DNA -347 2899 1821 1464 174 7 62 chr21 7898907 7899211 -27008359 - Ricksha DNA DNA -2957 289 3 365 287 105 53 chr21 7899217 7899597 -27007973 - L1M4 LINE L1 -3097 3049 2650 21 36 0 0 chr21 7901385 7901413 -27006157 + AT_rich Low_complexity Low_complexity 1 28 0 562 319 45 24 chr21 7902128 7902420 -27005150 + ERVL LTR ERVL 2071 2368 -3396 4787 214 64 26 chr21 7902482 7902625 -27004945 - L1MC1 LINE L1 -25 6588 6452 1516 175 38 24 chr21 7902625 7902916 -27004654 + AluJo SINE Alu 2 296 -16 4787 214 64 26 chr21 7902916 7904654 -27002916 - L1MC1 LINE L1 -161 6452 4639 1850 258 25 40 chr21 7904687 7904869 -27002701 - L1MC1 LINE L1 -1865 4561 4378 2274 105 0 0 chr21 7904869 7905174 -27002396 + AluY SINE Alu 1 305 -6 1850 258 25 40 chr21 7905174 7905639 -27001931 - L1MC1 LINE L1 -2048 4378 3924 591 251 44 4 chr21 7905733 7905960 -27001610 - L1MC1 LINE L1 -2872 3554 3319 1570 180 27 88 chr21 7905967 7906511 -27001059 + MLT2A2 LTR ERVL 27 554 0 2875 229 31 25 chr21 7906516 7907443 -27000127 - L1MC1 LINE L1 -3106 3320 2384 2126 113 0 3 chr21 7907443 7907735 -26999835 - AluSg SINE Alu -19 291 1 2875 229 31 25 chr21 7907735 7907887 -26999683 - L1MC1 LINE L1 -4042 2384 2234 1008 318 43 10 chr21 7907931 7908346 -26999224 + L2 LINE L2 1924 2352 -962 2569 185 111 32 chr21 7908379 7909001 -26998569 + LTR51 LTR ERV1 1 671 0 2236 99 0 0 chr21 7910091 7910393 -26997177 - AluSg SINE Alu -8 302 1 618 173 30 81 chr21 7910893 7911090 -26996480 + MER53 DNA DNA 2 188 -1 22 35 0 0 chr21 7913448 7913477 -26994093 + AT_rich Low_complexity Low_complexity 1 29 0 1874 160 0 0 chr21 7913715 7914062 -26993508 + AluSx SINE Alu 1 347 0 1688 217 17 8 chr21 7914314 7914674 -26992896 + MLT1A1 LTR MaLR 3 365 0 23 0 0 0 chr21 7914911 7914934 -26992636 + AT_rich Low_complexity Low_complexity 1 23 0 1226 184 0 8 chr21 7915605 7915866 -26991704 + L1MA4 LINE L1 6038 6296 -4 308 24 24 0 chr21 7916280 7916321 -26991249 + (TG)n Simple_repeat Simple_repeat 1 42 0 356 279 36 0 chr21 7916335 7916446 -26991124 - Charlie7 DNA MER1_type -556 2056 1942 21 71 0 0 chr21 7917228 7917270 -26990300 + AT_rich Low_complexity Low_complexity 1 42 0 2184 120 0 0 chr21 7917279 7917579 -26989991 + AluSq SINE Alu 1 300 -13 696 163 0 31 chr21 7917581 7917710 -26989860 - L1PB4 LINE L1 -17 6139 6015 22 88 0 0 chr21 7918044 7918101 -26989469 + AT_rich Low_complexity Low_complexity 1 57 0 1862 155 0 3 chr21 7918221 7918517 -26989053 - AluSx SINE Alu -17 295 1 27 29 0 0 chr21 7918735 7918769 -26988801 + AT_rich Low_complexity Low_complexity 1 34 0 1933 147 16 3 chr21 7918868 7919182 -26988388 - MER57A LTR ERV1 -85 318 1 1648 138 24 0 chr21 7919182 7919435 -26988135 - MER57A-int LTR ERV1 0 7537 7279 693 126 31 31 chr21 7919435 7919562 -26988008 - LTR54B LTR ERV1 -367 131 5 15543 154 21 40 chr21 7919563 7921111 -26986459 - MER57A-int LTR ERV1 -389 7148 5571 1865 128 4 0 chr21 7921111 7921384 -26986186 + AluSc SINE Alu 1 274 -35 15543 154 21 40 chr21 7921384 7923305 -26984265 - MER57A-int LTR ERV1 -1966 5571 1709 300 267 19 19 chr21 7923739 7923844 -26983726 - MER57A-int LTR ERV1 -3724 1399 1295 4516 168 16 34 chr21 7924456 7925312 -26982258 - MER57A-int LTR ERV1 -6696 841 1 2218 161 20 5 chr21 7925312 7925709 -26981861 - MER57A LTR ERV1 0 403 1 607 218 86 37 chr21 7925726 7925969 -26981601 - MER69 DNA AcHobo -82 2444 2190 680 286 58 62 chr21 7926467 7926915 -26980655 - MER57A LTR ERV1 0 556 138 227 179 0 0 chr21 7927046 7927085 -26980485 - MLT2C1 LTR ERVL 0 397 359 26 0 0 0 chr21 7927085 7927111 -26980459 + AT_rich Low_complexity Low_complexity 1 26 0 22 94 0 0 chr21 7927167 7927231 -26980339 + AT_rich Low_complexity Low_complexity 1 64 0 275 269 25 8 chr21 7927284 7927403 -26980167 + (TA)n Simple_repeat Simple_repeat 2 122 0 1591 196 51 0 chr21 7927407 7927723 -26979847 - MLT2C1 LTR ERVL -57 340 9 547 241 18 0 chr21 7929298 7929450 -26978120 + L1MB5 LINE L1 5835 5995 -189 390 204 28 0 chr21 7929453 7929553 -26978017 + L1MB7 LINE L1 5877 5985 -189 24 0 0 0 chr21 7929818 7929842 -26977728 + AT_rich Low_complexity Low_complexity 1 24 0 1459 174 36 60 chr21 7930872 7931256 -26976314 + THE1C LTR MaLR 1 375 0 2064 134 0 0 chr21 7931287 7931579 -26975991 - AluSg SINE Alu -3 307 16 22 0 0 0 chr21 7932640 7932662 -26974908 + AT_rich Low_complexity Low_complexity 1 22 0 243 250 33 0 chr21 7932692 7932752 -26974818 - L1ME3 LINE L1 -24 6138 6077 22 80 0 0 chr21 7932906 7932956 -26974614 + AT_rich Low_complexity Low_complexity 1 50 0 184 68 23 45 chr21 7933064 7933108 -26974462 + (TTTTTG)n Simple_repeat Simple_repeat 2 44 0 358 348 57 0 chr21 7934477 7934635 -26972935 + L2 LINE L2 2980 3146 -167 1430 181 10 111 chr21 7934866 7935270 -26972300 + MLT1A1 LTR MaLR 1 363 -2 315 336 8 8 chr21 7938960 7939079 -26968491 + MLT1E2 LTR MaLR 213 331 -295 1803 225 131 31 chr21 7940071 7940590 -26966980 + MLT1E2 LTR MaLR 52 622 -4 2009 143 0 0 chr21 7940922 7941216 -26966354 + AluSx SINE Alu 1 294 -18 328 307 24 24 chr21 7941353 7941480 -26966090 + MLT1H LTR MaLR 136 262 -287 31 0 0 0 chr21 7941733 7941764 -26965806 + AT_rich Low_complexity Low_complexity 1 31 0 2114 183 10 0 chr21 7941794 7942192 -26965378 + MER57A LTR ERV1 2 403 0 21 89 0 0 chr21 7942919 7942975 -26964595 + AT_rich Low_complexity Low_complexity 1 56 0 22 35 0 0 chr21 7943007 7943036 -26964534 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr21 7943256 7943285 -26964285 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr21 7943525 7943548 -26964022 + AT_rich Low_complexity Low_complexity 1 23 0 1204 183 87 68 chr21 7943754 7944121 -26963449 - MLT1A2 LTR MaLR 0 374 1 21 89 0 0 chr21 7944499 7944555 -26963015 + AT_rich Low_complexity Low_complexity 1 56 0 1719 150 36 65 chr21 7945896 7946210 -26961360 + THE1C LTR MaLR 1 304 -71 2272 102 0 19 chr21 7946210 7946524 -26961046 + AluY SINE Alu 1 308 -3 1719 150 36 65 chr21 7946524 7946595 -26960975 + THE1C LTR MaLR 304 375 0 9218 148 30 18 chr21 7946595 7948141 -26959429 + THE1C-int LTR MaLR 15 1579 -1 1764 170 52 25 chr21 7948141 7948506 -26959064 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr21 7948843 7948864 -26958706 + AT_rich Low_complexity Low_complexity 1 21 0 342 138 0 0 chr21 7949044 7949102 -26958468 + (TG)n Simple_repeat Simple_repeat 1 58 0 1175 244 106 42 chr21 7949285 7949770 -26957800 - MLT1E2 LTR MaLR -81 573 7 360 0 0 0 chr21 7950454 7950494 -26957076 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 2002 142 0 0 chr21 7950497 7950779 -26956791 - AluSq SINE Alu -31 282 1 1534 246 55 10 chr21 7950910 7951313 -26956257 + L1PB1 LINE L1 14 434 -7131 7953 198 24 10 chr21 7951311 7953767 -26953803 + L1PB1 LINE L1 4722 7210 -360 276 213 0 0 chr21 7953767 7953828 -26953742 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 2404 121 11 3 chr21 7953828 7954201 -26953369 + L1PB1 LINE L1 7195 7570 0 1161 169 42 4 chr21 7954287 7954639 -26952931 + L1M1 LINE L1 5101 5462 -743 1378 126 35 0 chr21 7954642 7954872 -26952698 + L1MA2 LINE L1 6056 6293 -11 21 57 0 0 chr21 7955221 7955256 -26952314 + AT_rich Low_complexity Low_complexity 1 35 0 254 304 20 0 chr21 7955428 7955530 -26952040 + (TATATG)n Simple_repeat Simple_repeat 3 106 0 21 0 0 0 chr21 7955783 7955804 -26951766 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr21 7957508 7957540 -26950030 + AT_rich Low_complexity Low_complexity 1 32 0 25 51 0 0 chr21 7957746 7957785 -26949785 + AT_rich Low_complexity Low_complexity 1 39 0 53 57 0 0 chr21 7957984 7958072 -26949498 + AT_rich Low_complexity Low_complexity 1 88 0 351 119 0 0 chr21 7958429 7958496 -26949074 + (TATG)n Simple_repeat Simple_repeat 2 68 0 1323 232 0 7 chr21 7958496 7958780 -26948790 - AluJo SINE Alu -25 287 6 572 246 98 61 chr21 7959086 7959147 -26948423 - MLT1E LTR MaLR 0 593 536 2050 32 4 0 chr21 7959147 7959397 -26948173 - L1PA7 LINE L1 -18 6136 5886 572 246 98 61 chr21 7959397 7959599 -26947971 - MLT1E LTR MaLR -57 536 320 328 326 28 67 chr21 7959694 7959872 -26947698 - MLT1E LTR MaLR -362 180 10 2255 134 11 6 chr21 7960694 7961045 -26946525 + THE1C LTR MaLR 3 355 -20 2406 63 0 3 chr21 7961099 7961402 -26946168 - AluY SINE Alu -9 302 1 288 277 64 21 chr21 7961758 7961899 -26945671 - L1ME4a LINE L1 0 6121 5975 360 206 37 37 chr21 7962236 7962343 -26945227 - MLT1E2 LTR MaLR -1 625 519 258 271 0 0 chr21 7962556 7962615 -26944955 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 30 89 0 0 chr21 7962930 7963009 -26944561 + AT_rich Low_complexity Low_complexity 1 79 0 330 303 48 48 chr21 7963168 7963333 -26944237 - MIR3 SINE MIR -36 172 8 199 360 88 8 chr21 7963986 7964111 -26943459 - L2 LINE L2 -498 2816 2682 21 0 0 0 chr21 7964627 7964648 -26942922 + AT_rich Low_complexity Low_complexity 1 21 0 1095 225 26 1 chr21 7965594 7965863 -26941707 - MLT1D LTR MaLR -2 503 245 805 219 31 53 chr21 7965880 7966186 -26941384 + MLT2B1 LTR ERVL 79 479 -41 284 127 63 16 chr21 7966189 7966315 -26941255 + (TA)n Simple_repeat Simple_repeat 2 133 0 373 223 22 82 chr21 7966441 7966625 -26940945 - L1MC4 LINE L1 -131 7911 7739 453 339 70 31 chr21 7966643 7967027 -26940543 - L1M4c LINE L1 -4704 1680 1282 2451 54 0 0 chr21 7967897 7968192 -26939378 + AluY SINE Alu 6 300 -11 512 68 81 0 chr21 7968590 7968664 -26938906 - MADE1 DNA Mariner 0 80 1 22 35 0 0 chr21 7969187 7969216 -26938354 + AT_rich Low_complexity Low_complexity 1 29 0 2344 113 42 8 chr21 7970509 7970888 -26936682 + L1MA3 LINE L1 5914 6305 0 2251 109 0 3 chr21 7970986 7971290 -26936280 + AluSq SINE Alu 1 303 -10 27 0 0 0 chr21 7971650 7971677 -26935893 + AT_rich Low_complexity Low_complexity 1 27 0 207 100 0 0 chr21 7972963 7972993 -26934577 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 1963 135 3 10 chr21 7973224 7973561 -26934009 + AluSq SINE Alu 4 338 0 21 0 0 0 chr21 7974096 7974117 -26933453 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr21 7975536 7975583 -26931987 + AT_rich Low_complexity Low_complexity 1 47 0 858 298 12 4 chr21 7975716 7975974 -26931596 + MLT1E1 LTR MaLR 3 262 -392 432 319 19 6 chr21 7976020 7976177 -26931393 + MLT1E1 LTR MaLR 313 471 -153 663 250 32 6 chr21 7976326 7976482 -26931088 + MLT1E1 LTR MaLR 495 654 0 250 224 0 66 chr21 7977195 7977271 -26930299 + L1MB1 LINE L1 5981 6051 -117 2895 225 64 28 chr21 7977576 7978465 -26929105 - L1M4c LINE L1 -1959 4251 3331 313 146 0 0 chr21 7978468 7978516 -26929054 - L1M4c LINE L1 -3451 2759 2712 3025 119 12 8 chr21 7978513 7979528 -26928042 + L1PBa LINE L1 2307 3369 -3493 1904 260 56 42 chr21 7979743 7980634 -26926936 - L1M4c LINE L1 -4523 1608 800 1634 209 38 51 chr21 7980637 7981010 -26926560 + Tigger4(Zombi) DNA MER2_type 2 369 -2362 4899 190 34 40 chr21 7981011 7982089 -26925481 + Tigger4(Zombi) DNA MER2_type 1660 2731 0 543 281 44 10 chr21 7982089 7982292 -26925278 - L1M4c LINE L1 -5007 1134 925 760 350 31 19 chr21 7982930 7983290 -26924280 - L1M4c LINE L1 -5524 607 244 1189 218 23 33 chr21 7983536 7983874 -26923696 + MER89 LTR ERV1 3 471 -88 3070 219 53 21 chr21 7983998 7984802 -26922768 + L1MB3 LINE L1 5320 6149 -34 9432 158 43 7 chr21 7986516 7988812 -26918758 - Tigger1 DNA MER2_type 0 2418 2 56 29 0 0 chr21 7989144 7989214 -26918356 + AT_rich Low_complexity Low_complexity 1 70 0 2797 152 9 9 chr21 7989791 7990258 -26917312 + L1 LINE L1 3830 4296 -1850 2006 98 0 7 chr21 7991369 7991669 -26915901 - AluSg SINE Alu 0 311 14 5545 34 0 0 chr21 7991914 7992571 -26914999 + L1PA5 LINE L1 5494 6150 -4 46 78 0 0 chr21 7993231 7993333 -26914237 + AT_rich Low_complexity Low_complexity 1 102 0 952 198 65 11 chr21 7994513 7994776 -26912794 - L1MC3 LINE L1 -30 7755 7479 984 219 34 34 chr21 7994803 7995036 -26912534 - L1MC3 LINE L1 -400 7385 7153 2016 197 27 47 chr21 7995061 7995549 -26912021 - L1MC3 LINE L1 -756 7029 6552 2142 64 74 3 chr21 7995560 7995857 -26911713 - LTR17 LTR ERV1 0 780 463 1289 180 44 11 chr21 7995857 7997387 -26910183 - L1P3 LINE L1 -3278 3183 1561 689 109 10 0 chr21 7997395 7997496 -26910074 + LTR9B LTR ERV1 1 102 -542 1772 196 9 18 chr21 7997500 7997842 -26909728 + HUERS-P3b LTR ERV1 157 495 -6923 11622 123 14 17 chr21 7997965 7999723 -26907847 + HUERS-P3b LTR ERV1 891 2642 -4776 2378 186 29 5 chr21 7999723 8000143 -26907427 - LTR8 LTR ERV1 -250 441 12 1932 138 19 6 chr21 8000145 8000321 -26907249 + HUERS-P3b LTR ERV1 3064 3247 -4171 2448 44 0 3 chr21 8000321 8000614 -26906956 - AluY SINE Alu -6 305 14 1932 138 19 6 chr21 8000614 8000756 -26906814 + HUERS-P3b LTR ERV1 3247 3386 -4032 2070 150 3 0 chr21 8000727 8001041 -26906529 + HUERS-P3 LTR ERV1 8601 8915 -4 4278 109 9 8 chr21 8001045 8001687 -26905883 + LTR9B LTR ERV1 2 644 0 3593 207 27 18 chr21 8001687 8003271 -26904299 - L1P3 LINE L1 -4734 1141 1 947 189 38 77 chr21 8003279 8003728 -26903842 - L1MCa LINE L1 -4508 2056 1537 556 253 59 59 chr21 8003740 8003961 -26903609 - L1MCa LINE L1 -5001 1563 1343 459 213 28 28 chr21 8004001 8004109 -26903461 - FLAM_A SINE Alu -17 125 18 238 148 0 37 chr21 8004115 8004169 -26903401 - L1MCa LINE L1 -5364 1200 1149 1889 257 75 52 chr21 8004168 8004845 -26902725 - L1MCa LINE L1 -5346 699 7 250 260 28 72 chr21 8005710 8005891 -26901679 - L1ME LINE L1 -239 5882 5710 1980 88 46 7 chr21 8006343 8006627 -26900943 - AluY SINE Alu -16 295 1 207 0 0 0 chr21 8007604 8007627 -26899943 + (TG)n Simple_repeat Simple_repeat 2 24 0 25 75 0 0 chr21 8007809 8007862 -26899708 + AT_rich Low_complexity Low_complexity 1 53 0 786 295 44 49 chr21 8007862 8008473 -26899097 - L1MC5 LINE L1 -449 7512 6905 563 279 21 7 chr21 8008521 8008661 -26898909 - L1MC5 LINE L1 -1087 6874 6733 240 59 0 0 chr21 8011266 8011300 -26896270 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 1613 252 49 34 chr21 8011402 8011937 -26895633 - LTR55 LTR ERV -5 543 1 2097 144 19 25 chr21 8012526 8012888 -26894682 + THE1B LTR MaLR 1 360 -4 24 0 0 0 chr21 8013208 8013232 -26894338 + AT_rich Low_complexity Low_complexity 1 24 0 201 266 46 12 chr21 8014939 8015112 -26892458 + (TA)n Simple_repeat Simple_repeat 1 179 0 1393 201 88 31 chr21 8015259 8015613 -26891957 - MLT1A2 LTR MaLR 0 374 1 825 365 47 8 chr21 8016275 8016782 -26890788 - HERV16 LTR ERVL -2233 3531 3005 407 367 40 14 chr21 8016838 8017116 -26890454 - HERV16 LTR ERVL -2097 2899 2615 24 0 0 0 chr21 8017647 8017671 -26889899 + AT_rich Low_complexity Low_complexity 1 24 0 1908 154 26 32 chr21 8018144 8018521 -26889049 - THE1C LTR MaLR 0 375 1 2193 107 0 31 chr21 8019521 8019840 -26887730 - AluSq SINE Alu -4 309 1 260 314 65 48 chr21 8020290 8020580 -26886990 - HERV16 LTR ERVL -4340 656 362 314 45 23 0 chr21 8022013 8022057 -26885513 + (CA)n Simple_repeat Simple_repeat 2 46 0 1371 163 68 31 chr21 8022132 8022426 -26885144 - THE1C LTR MaLR -70 305 1 2115 166 38 20 chr21 8022431 8022828 -26884742 + MSTB1 LTR MaLR 28 431 -1 415 239 57 0 chr21 8023784 8023872 -26883698 - Tigger7 DNA MER2_type 0 2487 2395 1639 190 36 33 chr21 8023872 8024204 -26883366 - Tigger7 DNA MER2_type -212 521 189 2042 146 54 14 chr21 8024973 8025323 -26882247 + THE1B LTR MaLR 1 364 0 11201 111 3 0 chr21 8025324 8026898 -26880672 + THE1B-int LTR MaLR 2 1580 0 2233 126 54 14 chr21 8026898 8027248 -26880322 + THE1B LTR MaLR 1 364 0 28 0 0 0 chr21 8028309 8028337 -26879233 + AT_rich Low_complexity Low_complexity 1 28 0 397 294 56 48 chr21 8028343 8028595 -26878975 + L2 LINE L2 2151 2404 -910 273 333 93 52 chr21 8028873 8029182 -26878388 + L2 LINE L2 2743 3066 -247 22 56 0 0 chr21 8029247 8029283 -26878287 + AT_rich Low_complexity Low_complexity 1 36 0 783 325 89 24 chr21 8029771 8030319 -26877251 + L2 LINE L2 2708 3293 -20 225 184 20 20 chr21 8030682 8030731 -26876839 + MLT1E1 LTR MaLR 1 49 -605 27 49 0 0 chr21 8032399 8032440 -26875130 + AT_rich Low_complexity Low_complexity 1 41 0 2768 233 32 12 chr21 8032980 8033823 -26873747 + L1MD2 LINE L1 5135 5997 -362 674 243 45 69 chr21 8033831 8034115 -26873455 + L1MC3 LINE L1 6038 7743 -42 213 65 0 0 chr21 8034838 8034869 -26872701 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 2000 141 0 0 chr21 8034873 8035170 -26872400 + AluSx SINE Alu 1 297 -15 31 58 0 0 chr21 8036045 8036097 -26871473 + AT_rich Low_complexity Low_complexity 1 52 0 24 53 0 0 chr21 8036459 8036497 -26871073 + AT_rich Low_complexity Low_complexity 1 38 0 1376 172 52 49 chr21 8039051 8039478 -26868092 - MLT2B2 LTR ERVL -35 480 6 7709 159 57 9 chr21 8040366 8040434 -26867136 - Tigger1 DNA MER2_type -916 1502 1439 1998 140 0 7 chr21 8040434 8040741 -26866829 + AluSx SINE Alu 3 307 -5 7709 159 57 9 chr21 8040741 8041924 -26865646 - Tigger1 DNA MER2_type -979 1439 174 222 37 0 0 chr21 8041924 8041951 -26865619 + (TAA)n Simple_repeat Simple_repeat 3 29 0 7709 159 57 9 chr21 8041951 8042101 -26865469 - Tigger1 DNA MER2_type -2244 174 33 200 250 10 40 chr21 8042268 8042368 -26865202 + T-rich Low_complexity Low_complexity 2 98 0 1459 201 3 39 chr21 8042442 8042750 -26864820 + AluJo SINE Alu 3 299 -13 22 56 0 0 chr21 8043451 8043487 -26864083 + AT_rich Low_complexity Low_complexity 1 36 0 23 86 0 0 chr21 8043629 8043687 -26863883 + AT_rich Low_complexity Low_complexity 1 58 0 1629 181 7 3 chr21 8046463 8046761 -26860809 - AluJo SINE Alu -13 299 1 21 0 0 0 chr21 8046971 8046992 -26860578 + AT_rich Low_complexity Low_complexity 1 21 0 193 54 0 54 chr21 8047010 8047047 -26860523 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 8047614 8047635 -26859935 + AT_rich Low_complexity Low_complexity 1 21 0 1495 120 0 21 chr21 8047790 8048023 -26859547 - AluSg/x SINE Alu -6 304 77 29 70 0 0 chr21 8048569 8048626 -26858944 + AT_rich Low_complexity Low_complexity 1 57 0 2209 110 0 0 chr21 8050099 8050399 -26857171 - AluSx SINE Alu -12 300 1 329 117 17 0 chr21 8050497 8050557 -26857013 + (TA)n Simple_repeat Simple_repeat 2 62 0 186 43 0 0 chr21 8050878 8050901 -26856669 + (TA)n Simple_repeat Simple_repeat 2 24 0 14070 43 8 0 chr21 8050901 8053399 -26854171 - L1PA5 LINE L1 -5 6149 3628 1455 156 22 0 chr21 8053929 8054160 -26853410 - MER4A LTR ERV1 0 664 429 510 133 89 0 chr21 8054300 8054390 -26853180 - MER4A LTR ERV1 -566 98 1 21 57 0 0 chr21 8054442 8054477 -26853093 + AT_rich Low_complexity Low_complexity 1 35 0 238 83 0 0 chr21 8054503 8054539 -26853031 + tRNA-Cys-TGC tRNA tRNA 1 36 -39 855 241 86 34 chr21 8054566 8054976 -26852594 + MLT1C LTR MaLR 1 452 -15 234 86 0 0 chr21 8055195 8055209 -26852361 + (CAT)n Simple_repeat Simple_repeat 2 15 -21 3372 96 15 0 chr21 8055209 8055688 -26851882 - LTR19A LTR ERV1 0 486 1 234 86 0 0 chr21 8055688 8055708 -26851862 + (CAT)n Simple_repeat Simple_repeat 14 36 0 369 0 0 0 chr21 8055758 8055799 -26851771 + (TG)n Simple_repeat Simple_repeat 2 42 0 219 325 0 12 chr21 8057163 8057246 -26850324 - MIR SINE MIR 0 262 181 23 0 0 0 chr21 8057632 8057655 -26849915 + AT_rich Low_complexity Low_complexity 1 23 0 266 250 0 0 chr21 8058288 8058352 -26849218 + A-rich Low_complexity Low_complexity 1 64 0 308 255 0 29 chr21 8058385 8058487 -26849083 + A-rich Low_complexity Low_complexity 2 100 0 22 80 0 0 chr21 8058994 8059044 -26848526 + AT_rich Low_complexity Low_complexity 1 50 0 183 156 0 0 chr21 8059337 8059369 -26848201 + GA-rich Low_complexity Low_complexity 3 34 0 7636 25 2 1 chr21 8059753 8060672 -26846898 - L1P LINE L1 -925 5221 4302 6976 31 1 0 chr21 8060672 8061116 -26846454 + L1PA3 LINE L1 5323 6152 -3 3150 39 3 0 chr21 8061116 8061499 -26846071 + L1PA3 LINE L1 5769 6152 -3 23 33 0 0 chr21 8061499 8061529 -26846041 + AT_rich Low_complexity Low_complexity 1 30 0 694 286 76 44 chr21 8062060 8062565 -26845005 + L1MC/D LINE L1 5002 5518 -760 1001 242 68 32 chr21 8063120 8063500 -26844070 + L1MC4a LINE L1 6198 6591 -1217 1189 239 25 48 chr21 8063511 8063951 -26843619 + L1MC4 LINE L1 6825 7254 -788 352 239 85 0 chr21 8064027 8064157 -26843413 + L1MC4 LINE L1 7902 8042 0 407 333 59 14 chr21 8064532 8064754 -26842816 + MIR SINE MIR 29 260 -2 22 35 0 0 chr21 8065436 8065465 -26842105 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr21 8065738 8065784 -26841786 + AT_rich Low_complexity Low_complexity 1 46 0 621 246 0 0 chr21 8067091 8067217 -26840353 + MER7A DNA MER2_type 2 125 -221 5914 148 48 50 chr21 8067416 8068405 -26839165 + Tigger3b DNA MER2_type 1 988 -2040 1865 102 34 4 chr21 8068405 8068671 -26838899 - AluSq SINE Alu -35 278 5 5914 148 48 50 chr21 8068671 8068915 -26838655 + Tigger3b DNA MER2_type 988 1231 0 371 323 50 50 chr21 8069401 8069602 -26837968 + L2 LINE L2 2861 3061 -211 22 0 0 0 chr21 8069680 8069702 -26837868 + AT_rich Low_complexity Low_complexity 1 22 0 489 283 52 36 chr21 8070047 8070298 -26837272 + L1MC/D LINE L1 2202 2456 -3690 472 231 57 24 chr21 8070326 8070538 -26837032 + L1MC/D LINE L1 2511 2729 -3417 610 259 76 58 chr21 8070541 8070885 -26836685 + L1MC/D LINE L1 2713 3062 -3084 294 298 67 26 chr21 8070924 8071266 -26836304 + L1MC/D LINE L1 3117 3472 -2674 432 253 41 53 chr21 8071333 8071503 -26836067 + L1MC/D LINE L1 3560 3727 -2419 293 303 101 54 chr21 8071520 8071831 -26835739 + L1MC/D LINE L1 3713 4055 -2091 2187 107 0 16 chr21 8071831 8072141 -26835429 + AluSp SINE Alu 1 305 -8 293 303 101 54 chr21 8072141 8072294 -26835276 + L1MC/D LINE L1 4055 4199 -1947 1620 215 13 32 chr21 8072316 8072688 -26834882 - MLT1A1 LTR MaLR 0 365 1 419 279 68 7 chr21 8072707 8072854 -26834716 + L1MC/D LINE L1 4249 4404 -1742 1009 221 14 0 chr21 8072863 8073076 -26834494 + L1MC/D LINE L1 5471 5686 -647 689 197 8 18 chr21 8073097 8073244 -26834326 - MSTC LTR MaLR -296 161 3 376 272 64 8 chr21 8073253 8073378 -26834192 + L1ME LINE L1 5589 5720 -442 1931 116 0 8 chr21 8073899 8074199 -26833371 + AluSc SINE Alu 16 313 0 278 50 25 0 chr21 8077182 8077222 -26830348 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 174 0 22 chr21 8079627 8079673 -26827897 + (TA)n Simple_repeat Simple_repeat 2 46 0 477 90 0 0 chr21 8079988 8080055 -26827515 + (TG)n Simple_repeat Simple_repeat 2 68 0 1492 200 54 11 chr21 8080063 8080413 -26827157 - MLT1A1 LTR MaLR 0 365 1 207 267 0 0 chr21 8080464 8080509 -26827061 + (CA)n Simple_repeat Simple_repeat 2 46 0 1546 129 8 0 chr21 8080554 8080802 -26826768 - L1PA13 LINE L1 -4 6159 5910 1781 223 8 6 chr21 8080835 8081194 -26826376 - MLT2D LTR ERVL -52 362 3 2434 73 0 0 chr21 8081553 8081855 -26825715 - AluY SINE Alu -8 303 2 1554 170 61 45 chr21 8081999 8082358 -26825212 + MLT1A1 LTR MaLR 1 365 0 193 51 51 26 chr21 8082428 8082467 -26825103 + (TTATA)n Simple_repeat Simple_repeat 1 40 0 202 211 0 0 chr21 8083185 8083223 -26824347 + GA-rich Low_complexity Low_complexity 1 38 0 1264 118 86 16 chr21 8084801 8085046 -26822524 - L1MA8 LINE L1 -4 6287 6026 40 37 0 0 chr21 8085047 8085101 -26822469 + AT_rich Low_complexity Low_complexity 1 54 0 367 141 16 0 chr21 8085102 8085166 -26822404 - L1PA16 LINE L1 -3 6163 6099 4397 178 41 13 chr21 8085168 8085903 -26821667 - L1PA16 LINE L1 -105 6061 5291 189 0 0 0 chr21 8085903 8085924 -26821646 + (TTTTA)n Simple_repeat Simple_repeat 5 25 0 4397 178 41 13 chr21 8085924 8086350 -26821220 - L1PA16 LINE L1 -875 5291 4879 261 341 46 32 chr21 8087027 8087244 -26820326 - HAL1 LINE L1 -609 1898 1679 23 0 0 0 chr21 8087436 8087459 -26820111 + AT_rich Low_complexity Low_complexity 1 23 0 36 53 0 0 chr21 8087538 8087595 -26819975 + AT_rich Low_complexity Low_complexity 1 57 0 1920 108 3 14 chr21 8087837 8088154 -26819416 + AluSq SINE Alu 1 314 0 214 336 0 8 chr21 8090548 8090670 -26816900 + (CCA)n Simple_repeat Simple_repeat 1 121 0 248 0 31 0 chr21 8090845 8090877 -26816693 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 258 116 0 0 chr21 8090977 8091020 -26816550 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 266 47 0 chr21 8091058 8091122 -26816448 - L2 LINE L2 -32 3281 3215 314 290 0 50 chr21 8091236 8091248 -26816322 - L1MC4 LINE L1 -1334 6708 6697 2022 135 0 0 chr21 8091248 8091537 -26816033 + AluSx SINE Alu 1 289 -23 314 290 0 50 chr21 8091537 8091624 -26815946 - L1MC4 LINE L1 -1345 6697 6614 317 250 0 62 chr21 8091544 8091640 -26815930 + L1MC4 LINE L1 6614 6703 -1339 245 133 0 0 chr21 8091654 8091699 -26815871 - LTR66 LTR ERVL -393 217 173 241 113 0 0 chr21 8091728 8091781 -26815789 - LTR66 LTR ERVL -393 217 165 22 35 0 0 chr21 8093177 8093206 -26814364 + AT_rich Low_complexity Low_complexity 1 29 0 384 77 0 0 chr21 8093480 8093532 -26814038 + (CA)n Simple_repeat Simple_repeat 1 52 0 255 61 0 0 chr21 8094795 8094828 -26812742 + (TG)n Simple_repeat Simple_repeat 2 34 0 216 0 0 0 chr21 8095516 8095540 -26812030 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 262 283 123 9 chr21 8095781 8095887 -26811683 - L2 LINE L2 -19 3253 3136 1128 266 25 6 chr21 8096973 8097342 -26810228 + MSTD LTR MaLR 1 396 0 3462 71 6 40 chr21 8097697 8098168 -26809402 - L1PA7 LINE L1 -7 6147 5661 1885 114 0 0 chr21 8098168 8098423 -26809147 - AluY SINE Alu -13 298 44 3462 71 6 40 chr21 8098423 8099032 -26808538 - L1PA7 LINE L1 -493 5661 4890 4080 139 22 74 chr21 8100111 8100939 -26806631 + LTR1 LTR ERV1 1 785 0 1905 130 75 23 chr21 8101232 8101578 -26805992 - THE1B LTR MaLR 0 364 1 11617 88 4 10 chr21 8101579 8103167 -26804403 - THE1B-int LTR MaLR -1 1579 1 2070 135 48 22 chr21 8103167 8103522 -26804048 - THE1B LTR MaLR 0 364 1 1949 185 11 21 chr21 8104250 8104623 -26802947 + MSTB1 LTR MaLR 1 369 -63 193 29 59 0 chr21 8105560 8105594 -26801976 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 0 0 0 chr21 8105594 8105619 -26801951 + AT_rich Low_complexity Low_complexity 1 25 0 1481 239 11 16 chr21 8105646 8106010 -26801560 - MLT1A1 LTR MaLR 0 365 4 2219 91 0 9 chr21 8107306 8107624 -26799946 - L1PA6 LINE L1 0 6154 5840 2114 47 0 0 chr21 8107624 8107879 -26799691 + L1P2 LINE L1 5407 5661 -493 25 31 0 0 chr21 8107990 8108022 -26799548 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr21 8108856 8108879 -26798691 + AT_rich Low_complexity Low_complexity 1 23 0 2310 87 0 3 chr21 8109220 8109532 -26798038 - AluY SINE Alu 0 311 1 25 0 0 0 chr21 8112505 8112530 -26795040 + AT_rich Low_complexity Low_complexity 1 25 0 227 306 135 9 chr21 8112653 8112764 -26794806 + MLT1I LTR MaLR 81 205 -204 338 221 29 0 chr21 8113443 8113511 -26794059 + MER76 LTR ERV 1 70 -618 1615 242 100 53 chr21 8113590 8113821 -26793749 + MER76 LTR ERV 63 282 -406 1792 123 27 10 chr21 8113821 8114121 -26793449 - AluSx SINE Alu -7 305 1 1615 242 100 53 chr21 8114121 8114487 -26793083 + MER76 LTR ERV 282 688 0 837 332 44 32 chr21 8114605 8115169 -26792401 - HERVL LTR ERVL -2728 2926 2356 1870 137 0 17 chr21 8117718 8118011 -26789559 - AluSx SINE Alu -15 297 10 295 332 46 36 chr21 8118209 8118405 -26789165 + MER63A DNA MER1_type 1 198 -12 1710 81 13 0 chr21 8118848 8119082 -26788488 - L1PA8 LINE L1 -9 6163 5927 419 345 5 15 chr21 8119360 8119557 -26788013 - MIR SINE MIR -31 231 37 226 206 59 0 chr21 8120008 8120076 -26787494 - L1M4b LINE L1 -5210 1649 1578 225 65 0 0 chr21 8120170 8120201 -26787369 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1510 154 56 8 chr21 8120204 8120471 -26787099 - AluSx SINE Alu -32 280 1 291 54 0 0 chr21 8120745 8120782 -26786788 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 279 330 10 0 chr21 8121223 8121320 -26786250 - MER69 DNA AcHobo -2419 107 10 34 24 0 0 chr21 8121962 8122003 -26785567 + AT_rich Low_complexity Low_complexity 1 41 0 282 115 0 0 chr21 8122587 8122639 -26784931 + (GA)n Simple_repeat Simple_repeat 1 52 0 1120 95 0 0 chr21 8123161 8123308 -26784262 - AluY SINE Alu -164 147 1 218 19 58 58 chr21 8123322 8123374 -26784196 + (TTTTG)n Simple_repeat Simple_repeat 1 52 0 1013 130 6 0 chr21 8123713 8123874 -26783696 - AluSg/x SINE Alu -3 307 146 766 306 80 34 chr21 8124460 8124875 -26782695 + L2 LINE L2 2876 3309 -4 23 86 0 0 chr21 8126446 8126504 -26781066 + AT_rich Low_complexity Low_complexity 1 58 0 263 289 123 9 chr21 8127139 8127253 -26780317 - MIR SINE MIR -57 205 79 25 51 0 0 chr21 8127458 8127497 -26780073 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr21 8128374 8128402 -26779168 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 8129006 8129050 -26778520 + AT_rich Low_complexity Low_complexity 1 44 0 26125 55 6 2 chr21 8130966 8135090 -26772480 + L1PA5 LINE L1 2012 6153 -1 1969 177 83 5 chr21 8137196 8137591 -26769979 + MSTA LTR MaLR 1 426 -2 27 49 0 0 chr21 8138037 8138078 -26769492 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr21 8138285 8138309 -26769261 + AT_rich Low_complexity Low_complexity 1 24 0 309 109 0 0 chr21 8139436 8139482 -26768088 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 77 0 0 chr21 8139509 8139561 -26768009 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr21 8140044 8140077 -26767493 + AT_rich Low_complexity Low_complexity 1 33 0 256 136 51 0 chr21 8140095 8140154 -26767416 + (CATA)n Simple_repeat Simple_repeat 1 62 0 42 0 0 0 chr21 8141150 8141192 -26766378 + AT_rich Low_complexity Low_complexity 1 42 0 2496 182 14 41 chr21 8142098 8142354 -26765216 - MER70B LTR ERVL -103 475 237 1898 83 29 40 chr21 8142354 8142630 -26764940 - AluSx SINE Alu -19 293 21 2496 182 14 41 chr21 8142630 8142861 -26764709 - MER70B LTR ERVL -341 237 1 204 216 0 0 chr21 8143357 8143408 -26764162 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 1558 85 0 5 chr21 8143995 8144196 -26763374 + AluY SINE Alu 1 200 -111 1731 178 88 19 chr21 8144998 8145520 -26762050 - MLT2A2 LTR ERVL 0 554 1 446 326 71 41 chr21 8146669 8147037 -26760533 + ERVL LTR ERVL 4087 4465 -1299 222 203 72 0 chr21 8148647 8148716 -26758854 + A-rich Low_complexity Low_complexity 3 76 0 30 27 0 0 chr21 8149757 8149794 -26757776 + AT_rich Low_complexity Low_complexity 1 37 0 384 179 0 12 chr21 8149809 8149893 -26757677 - L1PB4 LINE L1 0 6156 6074 271 248 9 19 chr21 8150300 8150405 -26757165 + (TA)n Simple_repeat Simple_repeat 2 105 0 1622 249 83 78 chr21 8151426 8151930 -26755640 - MLT1E1 LTR MaLR -1 653 144 1366 233 50 11 chr21 8151930 8152290 -26755280 - MLT1A2 LTR MaLR 0 374 1 1622 249 83 78 chr21 8152290 8152423 -26755147 - MLT1E1 LTR MaLR -510 144 13 225 295 16 33 chr21 8152512 8152634 -26754936 + GA-rich Low_complexity Low_complexity 4 123 0 205 241 8 45 chr21 8152915 8153048 -26754522 + CT-rich Low_complexity Low_complexity 3 130 0 854 283 62 4 chr21 8153532 8153808 -26753762 + MLT1C LTR MaLR 7 298 -169 1073 86 0 0 chr21 8154973 8155113 -26752457 - AluSg/x SINE Alu -17 293 154 516 146 0 0 chr21 8155116 8155198 -26752372 - AluY SINE Alu -236 82 1 11742 175 43 26 chr21 8156262 8158691 -26748879 + L1M4c LINE L1 18 2487 -3897 1305 203 103 11 chr21 8158689 8159049 -26748521 + L1MB3 LINE L1 5783 6175 -8 32 0 0 0 chr21 8160298 8160330 -26747240 + AT_rich Low_complexity Low_complexity 1 32 0 519 335 35 22 chr21 8160970 8161200 -26746370 + MIR SINE MIR 12 244 -18 2360 62 0 20 chr21 8161792 8162098 -26745472 + AluY SINE Alu 1 300 -11 477 198 0 0 chr21 8162101 8162202 -26745368 + GA-rich Low_complexity Low_complexity 2 102 0 235 143 0 0 chr21 8162212 8162247 -26745323 + MLT1I LTR MaLR 100 134 -275 285 208 10 69 chr21 8162714 8162815 -26744755 - MLT1K LTR MaLR -2 586 492 592 263 20 0 chr21 8162961 8163113 -26744457 - MIR SINE MIR -1 261 107 210 208 0 0 chr21 8163131 8163184 -26744386 + (TA)n Simple_repeat Simple_repeat 1 53 0 24 32 0 0 chr21 8163933 8163964 -26743606 + AT_rich Low_complexity Low_complexity 1 31 0 537 285 201 44 chr21 8164034 8164378 -26743192 + L2 LINE L2 2913 3310 -3 262 253 51 13 chr21 8164740 8164819 -26742751 - MIR SINE MIR -73 189 108 2554 37 0 34 chr21 8164897 8165218 -26742352 - AluY SINE Alu 0 311 2 258 148 0 0 chr21 8167489 8167543 -26740027 + (TA)n Simple_repeat Simple_repeat 1 54 0 21 71 0 0 chr21 8167854 8167896 -26739674 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr21 8168329 8168353 -26739217 + AT_rich Low_complexity Low_complexity 1 24 0 887 85 0 8 chr21 8169785 8169914 -26737656 + L1MA4 LINE L1 6162 6289 -11 22 35 0 0 chr21 8171011 8171040 -26736530 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr21 8171294 8171329 -26736241 + AT_rich Low_complexity Low_complexity 1 35 0 200 203 17 34 chr21 8171350 8171409 -26736161 + (ATTG)n Simple_repeat Simple_repeat 4 61 0 3990 195 44 29 chr21 8171444 8172906 -26734664 - MER52A LTR ERV1 0 1755 3 1562 132 38 7 chr21 8172908 8173386 -26734184 - MER52A-int LTR ERV1 0 7091 6563 1038 217 97 8 chr21 8173373 8173654 -26733916 - MER52-int LTR ERV1 -3818 3273 2942 559 128 0 0 chr21 8173654 8173747 -26733823 + MLT2A2 LTR ERVL 1 93 -360 1095 150 0 0 chr21 8173747 8173907 -26733663 - THE1B LTR MaLR 0 364 205 1748 180 0 58 chr21 8173904 8174248 -26733322 - MER52A LTR ERV1 -1008 747 424 584 244 6 65 chr21 8174239 8174407 -26733163 - MER52A LTR ERV1 -1581 174 17 1333 196 18 97 chr21 8174512 8174905 -26732665 + MLT1A1 LTR MaLR 4 365 0 1933 241 50 63 chr21 8174969 8175240 -26732330 - MER76 LTR ERV -78 610 337 2229 118 0 0 chr21 8175240 8175544 -26732026 + AluSx SINE Alu 1 304 -8 1933 241 50 63 chr21 8175544 8175890 -26731680 - MER76 LTR ERV -351 337 1 225 0 0 0 chr21 8175950 8175975 -26731595 + (A)n Simple_repeat Simple_repeat 1 25 0 28 86 0 0 chr21 8176446 8176516 -26731054 + AT_rich Low_complexity Low_complexity 1 70 0 24 77 0 0 chr21 8177894 8177946 -26729624 + AT_rich Low_complexity Low_complexity 1 52 0 23 86 0 0 chr21 8178200 8178258 -26729312 + AT_rich Low_complexity Low_complexity 1 58 0 201 229 0 0 chr21 8179084 8179119 -26728451 + (TG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr21 8179424 8179452 -26728118 + AT_rich Low_complexity Low_complexity 1 28 0 2214 90 7 10 chr21 8180285 8180586 -26726984 - AluSc SINE Alu -9 300 1 245 333 56 41 chr21 8180649 8180844 -26726726 + L1MC/D LINE L1 5528 5725 -2083 602 293 27 31 chr21 8181550 8181772 -26725798 - MIR SINE MIR -10 252 32 34 24 0 0 chr21 8181778 8181819 -26725751 + AT_rich Low_complexity Low_complexity 1 41 0 2165 181 28 32 chr21 8182088 8182524 -26725046 + Tigger2a DNA MER2_type 1 434 0 22 0 0 0 chr21 8182613 8182635 -26724935 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr21 8184732 8184779 -26722791 + AT_rich Low_complexity Low_complexity 1 47 0 354 98 0 0 chr21 8185365 8185416 -26722154 + (TG)n Simple_repeat Simple_repeat 2 52 0 189 246 0 0 chr21 8185770 8185835 -26721735 + (CA)n Simple_repeat Simple_repeat 2 66 0 228 35 0 0 chr21 8186643 8186672 -26720898 + (TC)n Simple_repeat Simple_repeat 1 29 0 207 0 0 0 chr21 8186671 8186694 -26720876 + (CA)n Simple_repeat Simple_repeat 1 23 0 982 200 121 6 chr21 8187034 8187389 -26720181 + Charlie1b DNA MER1_type 70 465 -58 221 359 66 0 chr21 8187871 8187977 -26719593 + L2 LINE L2 2256 2368 -946 559 246 107 26 chr21 8188024 8188395 -26719175 + L1MB7 LINE L1 852 1244 -5140 1605 244 29 59 chr21 8188410 8189087 -26718483 + L1MB7 LINE L1 2282 2939 -3443 1509 250 65 13 chr21 8189083 8189680 -26717890 + L1MB7 LINE L1 2785 3412 -2970 1020 152 0 0 chr21 8189695 8189874 -26717696 + AluSg/x SINE Alu 133 311 0 699 264 20 23 chr21 8189885 8190184 -26717386 + L1MB7 LINE L1 3413 3710 -2672 3287 223 46 24 chr21 8190208 8190249 -26717321 + L1MB7 LINE L1 3773 3812 -2608 2207 100 0 3 chr21 8190249 8190550 -26717020 + AluY SINE Alu 1 300 -11 3287 223 46 24 chr21 8190550 8190812 -26716758 + L1MB7 LINE L1 3812 4067 -2353 207 114 0 0 chr21 8190812 8190847 -26716723 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3287 223 46 24 chr21 8190847 8191128 -26716442 + L1MB7 LINE L1 4067 4340 -2080 315 0 0 0 chr21 8191128 8191163 -26716407 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3287 223 46 24 chr21 8191163 8191947 -26715623 + L1MB7 LINE L1 4340 5105 -1315 2086 117 0 3 chr21 8191947 8192237 -26715333 + AluSc SINE Alu 1 289 -20 3287 223 46 24 chr21 8192237 8192867 -26714703 + L1MB7 LINE L1 5105 5719 -701 1847 103 136 30 chr21 8192867 8193206 -26714364 - THE1C LTR MaLR 0 375 1 3287 223 46 24 chr21 8193206 8193677 -26713893 + L1MB7 LINE L1 5719 6406 -14 4690 169 42 4 chr21 8195001 8196531 -26711039 + L1PA16 LINE L1 4488 6068 -98 2267 65 0 3 chr21 8197680 8197997 -26709573 - AluY SINE Alu 0 311 1 38 96 0 0 chr21 8198694 8198809 -26708761 + AT_rich Low_complexity Low_complexity 1 115 0 22 56 0 0 chr21 8199596 8199632 -26707938 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr21 8200146 8200170 -26707400 + AT_rich Low_complexity Low_complexity 1 24 0 220 204 0 0 chr21 8201615 8201659 -26705911 + (CAA)n Simple_repeat Simple_repeat 2 45 0 518 272 39 28 chr21 8202183 8202363 -26705207 - MLT1H LTR MaLR -335 214 33 293 93 19 0 chr21 8202736 8202790 -26704780 + (TG)n Simple_repeat Simple_repeat 1 55 0 5613 100 27 28 chr21 8202885 8203247 -26704323 + L1PA13 LINE L1 5111 5472 -691 2162 102 3 0 chr21 8203247 8203531 -26704039 - AluY SINE Alu -26 285 1 5613 100 27 28 chr21 8203531 8204211 -26703359 + L1PA13 LINE L1 5472 6152 -11 2105 107 0 19 chr21 8205056 8205366 -26702204 + AluSg SINE Alu 1 304 -6 1348 236 36 16 chr21 8205640 8205971 -26701599 + MLT1A1 LTR MaLR 22 624 -2 28 29 0 0 chr21 8206277 8206312 -26701258 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr21 8206423 8206446 -26701124 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr21 8207034 8207075 -26700495 + AT_rich Low_complexity Low_complexity 1 41 0 1262 56 26 67 chr21 8208632 8208732 -26698838 - L1PA13 LINE L1 -2 6161 6071 1809 128 35 98 chr21 8208732 8209132 -26698438 + THE1C LTR MaLR 1 375 0 1262 56 26 67 chr21 8209132 8209226 -26698344 - L1PA13 LINE L1 -92 6071 5975 1960 126 0 3 chr21 8209226 8209512 -26698058 - AluSg SINE Alu -6 304 20 1718 166 130 38 chr21 8209937 8210162 -26697408 + MSTA LTR MaLR 1 204 -224 2335 61 3 0 chr21 8210162 8210459 -26697111 + AluY SINE Alu 2 299 -12 1718 166 130 38 chr21 8210459 8210625 -26696945 + MSTA LTR MaLR 204 428 0 22 0 0 0 chr21 8211148 8211170 -26696400 + AT_rich Low_complexity Low_complexity 1 22 0 301 318 23 8 chr21 8211223 8211352 -26696218 - L1MCa LINE L1 -4501 1925 1795 1129 36 0 0 chr21 8211486 8211624 -26695946 - L1PA5 LINE L1 0 6154 6017 2775 209 11 68 chr21 8212258 8213023 -26694547 - L1MA7 LINE L1 -1 6290 5570 1925 182 39 13 chr21 8213292 8213681 -26693889 - MSTB LTR MaLR 0 426 28 1713 165 140 16 chr21 8214206 8214570 -26693000 + MSTA LTR MaLR 1 409 -19 1259 280 96 39 chr21 8215263 8215702 -26691868 - MLT1E LTR MaLR -129 464 1 27 29 0 0 chr21 8215962 8215996 -26691574 + AT_rich Low_complexity Low_complexity 1 34 0 298 350 12 55 chr21 8216855 8217018 -26690552 + L2 LINE L2 3125 3280 -33 513 141 7 42 chr21 8217123 8217265 -26690305 + CT-rich Low_complexity Low_complexity 2 138 0 252 0 0 0 chr21 8217263 8217291 -26690279 + (TC)n Simple_repeat Simple_repeat 1 28 0 1351 148 109 42 chr21 8217292 8217576 -26689994 - AluJb SINE Alu -9 303 1 222 91 0 0 chr21 8218040 8218073 -26689497 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 609 373 26 22 chr21 8218165 8218476 -26689094 + L1M2 LINE L1 1 312 -6537 6619 76 56 0 chr21 8219658 8221044 -26686526 - L1PA7 LINE L1 0 6154 4728 6626 82 5 16 chr21 8221044 8221982 -26685588 + L1PA7 LINE L1 3792 4719 -1427 3003 262 42 20 chr21 8221983 8223084 -26684486 - L1M4 LINE L1 -956 5190 4066 301 288 0 0 chr21 8223242 8223322 -26684248 - MIR SINE MIR 0 262 183 27 49 0 0 chr21 8223948 8223989 -26683581 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr21 8224022 8224058 -26683512 + AT_rich Low_complexity Low_complexity 1 36 0 48 67 0 0 chr21 8225268 8225358 -26682212 + AT_rich Low_complexity Low_complexity 1 90 0 2095 132 3 3 chr21 8225369 8225679 -26681891 + AluSx SINE Alu 1 310 -2 22 35 0 0 chr21 8225701 8225730 -26681840 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 8226778 8226799 -26680771 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr21 8227135 8227185 -26680385 + AT_rich Low_complexity Low_complexity 1 50 0 346 238 89 20 chr21 8228049 8228150 -26679420 - L1ME LINE L1 -460 5661 5554 2023 201 30 59 chr21 8228150 8228642 -26678928 - MER66B LTR ERV1 0 486 9 9057 162 32 32 chr21 8228725 8229484 -26678086 - Ricksha DNA DNA -8 3238 2480 1465 179 0 39 chr21 8229484 8229769 -26677801 + AluJo SINE Alu 14 287 -25 9057 162 32 32 chr21 8229769 8230791 -26676779 - Ricksha DNA DNA -765 2481 1457 2004 89 0 11 chr21 8230793 8231062 -26676508 + AluSx SINE Alu 3 268 -44 234 0 0 0 chr21 8231074 8231100 -26676470 + (CAAA)n Simple_repeat Simple_repeat 4 29 0 892 106 15 0 chr21 8231137 8231269 -26676301 - L1PA13 LINE L1 -261 5902 5769 1390 114 27 0 chr21 8231269 8231488 -26676082 + L1PA13 LINE L1 5939 6163 0 1458 196 7 0 chr21 8231513 8231788 -26675782 + AluJb SINE Alu 12 288 -24 3475 151 19 3 chr21 8231789 8232377 -26675193 - Ricksha DNA DNA -1814 1432 836 316 296 88 0 chr21 8232376 8232501 -26675069 - MLT2D LTR ERVL -112 441 306 2415 197 166 10 chr21 8232396 8232979 -26674591 - Ricksha DNA DNA -2534 712 39 649 276 67 30 chr21 8236043 8236340 -26671230 - L1MC4 LINE L1 -970 7072 6765 1789 269 36 18 chr21 8237551 8238225 -26669345 + L1MC1 LINE L1 4312 4997 -1149 4484 165 37 9 chr21 8238256 8239104 -26668466 + L1MC1 LINE L1 5463 6333 0 326 205 60 0 chr21 8240057 8240140 -26667430 - LTR49 LTR ERV1 0 595 508 356 239 92 0 chr21 8240121 8240230 -26667340 - LTR48 LTR ERV1 -189 598 480 563 202 97 1 chr21 8240223 8240469 -26667101 - LTR48B LTR ERV1 -308 336 48 1443 229 31 11 chr21 8240558 8240916 -26666654 - MLT1A1 LTR MaLR 0 365 1 785 278 54 57 chr21 8241041 8241466 -26666104 + MLT2C2 LTR ERVL 1 424 -40 23 33 0 0 chr21 8241490 8241520 -26666050 + AT_rich Low_complexity Low_complexity 1 30 0 241 176 9 37 chr21 8241521 8241629 -26665941 + (TA)n Simple_repeat Simple_repeat 2 106 0 22 0 0 0 chr21 8241825 8241847 -26665723 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr21 8242095 8242129 -26665441 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr21 8243753 8243783 -26663787 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr21 8244560 8244582 -26662988 + AT_rich Low_complexity Low_complexity 1 22 0 408 190 140 20 chr21 8245730 8245939 -26661631 + FLAM_C SINE Alu 32 252 0 839 169 0 0 chr21 8245943 8246079 -26661491 + FRAM SINE Alu 24 159 -17 2322 62 0 0 chr21 8246955 8247247 -26660323 - AluY SINE Alu -19 292 1 553 329 48 0 chr21 8249712 8249919 -26657651 + L2 LINE L2 2724 2940 -374 465 208 24 83 chr21 8250078 8250246 -26657324 + L2 LINE L2 3153 3310 -3 333 299 0 0 chr21 8250844 8250931 -26656639 + L1MC4 LINE L1 6614 6700 -1342 278 132 53 0 chr21 8252230 8252306 -26655264 + (TA)n Simple_repeat Simple_repeat 1 80 0 330 343 84 6 chr21 8254360 8254526 -26653044 + MLT1J LTR MaLR 20 198 -313 990 98 6 12 chr21 8255870 8256034 -26651536 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 1407 291 40 30 chr21 8257052 8257358 -26650212 - MLT1C-int LTR MaLR -771 600 284 1969 120 0 10 chr21 8257358 8257658 -26649912 - AluSc SINE Alu -10 299 3 1407 291 40 30 chr21 8257658 8257943 -26649627 - MLT1C-int LTR MaLR -1087 284 3 192 40 0 0 chr21 8258934 8258959 -26648611 + (TG)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr21 8259255 8259276 -26648294 + AT_rich Low_complexity Low_complexity 1 21 0 544 339 62 7 chr21 8259378 8259652 -26647918 + MLT1J1 LTR MaLR 15 303 -143 185 61 30 0 chr21 8259718 8259732 -26647838 + (CAAAAA)n Simple_repeat Simple_repeat 2 14 -21 2505 41 0 16 chr21 8259732 8260048 -26647522 + AluY SINE Alu 1 311 0 185 61 30 0 chr21 8260048 8260066 -26647504 + (CAAAAA)n Simple_repeat Simple_repeat 14 35 0 22 70 0 0 chr21 8261544 8261587 -26645983 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr21 8261628 8261653 -26645917 + AT_rich Low_complexity Low_complexity 1 25 0 32 56 0 14 chr21 8261816 8261855 -26645715 + AT_rich Low_complexity Low_complexity 1 40 -30 6107 179 20 1 chr21 8261855 8261922 -26645648 - L1PA11 LINE L1 -2 6172 6108 1905 109 52 80 chr21 8261922 8262308 -26645262 - THE1C LTR MaLR 0 375 1 6107 179 20 1 chr21 8262308 8264240 -26643330 - L1PA11 LINE L1 -66 6108 4182 32 56 0 14 chr21 8264240 8264271 -26643299 + AT_rich Low_complexity Low_complexity 40 70 0 207 0 0 0 chr21 8264274 8264297 -26643273 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1490 58 0 11 chr21 8264297 8264487 -26643083 - L1PA3 LINE L1 -6 6149 5962 4732 144 19 5 chr21 8264495 8265147 -26642423 - L1PA11 LINE L1 -1982 4164 3498 207 0 0 0 chr21 8265147 8265170 -26642400 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4732 144 19 5 chr21 8265170 8265300 -26642270 - L1PA11 LINE L1 -2648 3498 3371 2440 212 2 0 chr21 8265300 8265743 -26641827 - MLT1C LTR MaLR -15 452 9 24 0 0 0 chr21 8267286 8267310 -26640260 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr21 8267310 8267333 -26640237 + (TG)n Simple_repeat Simple_repeat 2 24 0 21 82 0 0 chr21 8268431 8268480 -26639090 + AT_rich Low_complexity Low_complexity 1 49 0 331 240 87 27 chr21 8268857 8269007 -26638563 + MLT1J LTR MaLR 1 159 -352 3452 130 32 2 chr21 8270792 8271354 -26636216 - L1PA10 LINE L1 -1169 4977 4399 5644 111 34 12 chr21 8271358 8272528 -26635042 + L1PA10 LINE L1 4979 6167 -1 680 211 36 12 chr21 8273115 8273246 -26634324 - L1M2 LINE L1 -492 5808 5669 2100 114 4 0 chr21 8273246 8273572 -26633998 - AluSq SINE Alu 0 328 2 680 211 36 12 chr21 8273572 8273626 -26633944 - L1M2 LINE L1 -631 5669 5618 253 89 0 0 chr21 8273692 8273737 -26633833 + LTR66 LTR ERVL 166 210 -400 355 252 7 7 chr21 8273739 8273894 -26633676 + (TA)n Simple_repeat Simple_repeat 1 155 0 22 35 0 0 chr21 8273894 8273923 -26633647 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr21 8274060 8274081 -26633489 + AT_rich Low_complexity Low_complexity 1 21 0 7936 188 49 27 chr21 8274147 8277044 -26630526 - L1MA6 LINE L1 0 6504 3556 14491 25 1 0 chr21 8277072 8279552 -26628018 - L1PA4 LINE L1 -3 6152 3671 4663 26 0 0 chr21 8279552 8280118 -26627452 + L1PA4 LINE L1 3095 3660 -2486 1454 233 55 6 chr21 8280197 8280690 -26626880 - L1MA6 LINE L1 -2908 3442 2926 1851 252 19 9 chr21 8280714 8281222 -26626348 - L1MA6 LINE L1 -3405 2945 2455 696 221 28 0 chr21 8281285 8281430 -26626140 - FAM SINE Alu -23 162 14 2685 278 64 49 chr21 8281442 8282000 -26625570 - L1MA6 LINE L1 -3959 2391 1843 213 39 0 0 chr21 8282000 8282026 -26625544 + (TG)n Simple_repeat Simple_repeat 1 26 0 2685 278 64 49 chr21 8282026 8283479 -26624091 - L1MA6 LINE L1 -4507 1843 588 1125 301 24 34 chr21 8283982 8284391 -26623179 - L1MA6 LINE L1 -5872 409 5 27 0 0 0 chr21 8284441 8284468 -26623102 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr21 8284502 8284523 -26623047 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr21 8284845 8284866 -26622704 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr21 8284915 8284958 -26622612 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr21 8284985 8285007 -26622563 + AT_rich Low_complexity Low_complexity 1 22 0 362 258 57 7 chr21 8285789 8285973 -26621597 - L1ME LINE L1 -661 5501 5300 2281 186 33 22 chr21 8285975 8286431 -26621139 + MLT1C LTR MaLR 1 461 -6 573 281 65 12 chr21 8286444 8286690 -26620880 - L1ME LINE L1 -852 5294 5036 1072 312 98 32 chr21 8286691 8287555 -26620015 - L1ME LINE L1 -1116 5030 4107 251 265 92 0 chr21 8288001 8288099 -26619471 + MIR SINE MIR 153 259 -3 459 52 0 0 chr21 8288656 8288714 -26618856 + (TTCC)n Simple_repeat Simple_repeat 4 61 0 2055 138 0 3 chr21 8288720 8289031 -26618539 - AluSx SINE Alu -2 310 1 1542 84 5 0 chr21 8289168 8289370 -26618200 - AluSp SINE Alu -110 203 1 26 30 0 0 chr21 8289402 8289435 -26618135 + AT_rich Low_complexity Low_complexity 1 33 0 6065 112 11 34 chr21 8289443 8290331 -26617239 - L1MA3 LINE L1 0 6305 5441 1498 204 0 44 chr21 8290331 8290649 -26616921 - AluJb SINE Alu -8 304 1 6065 112 11 34 chr21 8290649 8290751 -26616819 - L1MA3 LINE L1 -864 5441 5338 1541 206 24 5 chr21 8290752 8291131 -26616439 + L1MA3 LINE L1 4948 5333 -813 326 313 23 0 chr21 8291656 8291787 -26615783 - L1ME LINE L1 -2215 3931 3798 853 269 61 22 chr21 8292012 8292461 -26615109 - MLT1E LTR MaLR 0 593 137 25 51 0 0 chr21 8292598 8292637 -26614933 + AT_rich Low_complexity Low_complexity 1 39 0 4736 208 30 17 chr21 8292841 8294360 -26613210 - L1MC1 LINE L1 -5 6328 4788 646 200 0 15 chr21 8294608 8294738 -26612832 + FLAM_C SINE Alu 4 131 -12 336 143 0 0 chr21 8294752 8294808 -26612762 + (A)n Simple_repeat Simple_repeat 1 56 0 21 36 0 0 chr21 8295718 8295746 -26611824 + AT_rich Low_complexity Low_complexity 1 28 0 1390 105 16 89 chr21 8296260 8296508 -26611062 + MER30 DNA MER1_type 1 230 0 535 343 64 39 chr21 8296744 8297152 -26610418 - LTR16B LTR ERVL -27 437 20 226 257 68 0 chr21 8299578 8299652 -26607918 + MLT1G1 LTR MaLR 8 86 -509 676 289 75 0 chr21 8299777 8299964 -26607606 + MLT1G LTR MaLR 356 556 -34 2186 95 3 13 chr21 8300068 8300399 -26607171 - AluY SINE Alu 0 311 1 223 254 159 0 chr21 8300743 8300806 -26606764 - MIR SINE MIR -157 105 33 2889 93 37 9 chr21 8302258 8302297 -26605273 - MLT2A1 LTR ERVL 0 444 408 540 116 0 0 chr21 8302297 8302392 -26605178 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 2889 93 37 9 chr21 8302392 8302784 -26604786 - MLT2A1 LTR ERVL -36 408 1 2384 53 0 0 chr21 8302799 8303110 -26604460 - AluY SINE Alu 0 311 1 293 100 20 0 chr21 8303693 8303743 -26603827 + (TG)n Simple_repeat Simple_repeat 2 52 0 23 54 0 0 chr21 8303937 8303974 -26603596 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr21 8305110 8305132 -26602438 + AT_rich Low_complexity Low_complexity 1 22 0 2209 107 16 0 chr21 8305196 8305504 -26602066 - AluSp SINE Alu 0 313 1 503 230 20 34 chr21 8306667 8306830 -26600740 + MLT1G1 LTR MaLR 1 119 -411 5259 217 76 40 chr21 8306830 8307055 -26600515 - L1MC3 LINE L1 -297 7906 7691 2258 69 0 0 chr21 8307055 8307329 -26600241 - AluY SINE Alu -3 308 35 5259 217 76 40 chr21 8307329 8308664 -26598906 - L1MC3 LINE L1 -512 7691 6289 3594 253 41 31 chr21 8308664 8310385 -26597185 - L1MC3 LINE L1 -715 6047 4308 24 0 0 0 chr21 8310425 8310449 -26597121 + AT_rich Low_complexity Low_complexity 1 24 0 405 0 0 0 chr21 8310449 8310494 -26597076 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 249 232 29 0 chr21 8310527 8310596 -26596974 - L1MC3 LINE L1 -2286 4278 4208 401 297 61 32 chr21 8310606 8310916 -26596654 - L1MC3 LINE L1 -2576 3988 3670 1076 272 66 17 chr21 8310977 8311459 -26596111 - L1MC3 LINE L1 -4849 1196 691 1523 239 18 51 chr21 8312061 8312509 -26595061 + MER82 DNA MER2_type 215 647 -6 1165 282 71 65 chr21 8312518 8312884 -26594686 - L1MC3 LINE L1 -5360 685 312 2065 151 0 0 chr21 8312884 8313188 -26594382 + AluSq SINE Alu 3 306 -7 1165 282 71 65 chr21 8313188 8313437 -26594133 - L1MC3 LINE L1 -5733 312 66 27 29 0 0 chr21 8313493 8313527 -26594043 + AT_rich Low_complexity Low_complexity 1 34 0 1579 261 4 41 chr21 8313597 8314061 -26593509 - LTR2 LTR ERV1 0 449 3 13485 150 12 1 chr21 8314063 8316213 -26591357 - Harlequin LTR ERV1 -1 6895 4721 9693 201 28 10 chr21 8316246 8318137 -26589433 - HERVE LTR ERV1 -5888 1925 1 1779 231 7 41 chr21 8318137 8318600 -26588970 - LTR2 LTR ERV1 0 449 3 365 298 107 25 chr21 8318739 8319102 -26588468 - L1ME3A LINE L1 -230 5940 5548 225 291 106 43 chr21 8319233 8319374 -26588196 + L1MC/D LINE L1 5631 5780 -2028 2445 37 0 17 chr21 8320253 8320550 -26587020 + AluY SINE Alu 1 292 -19 1081 242 4 17 chr21 8320789 8321055 -26586515 - AluJb SINE Alu 0 312 50 1182 210 74 86 chr21 8322934 8323356 -26584214 + MER66A LTR ERV1 98 478 0 29 47 0 0 chr21 8324097 8324140 -26583430 + AT_rich Low_complexity Low_complexity 1 43 0 276 218 0 35 chr21 8324491 8324578 -26582992 + CT-rich Low_complexity Low_complexity 1 84 0 369 238 25 41 chr21 8326049 8326171 -26581399 + MER20 DNA MER1_type 99 218 -1 324 120 0 0 chr21 8326791 8326841 -26580729 + (CA)n Simple_repeat Simple_repeat 2 51 0 1299 192 96 43 chr21 8327271 8327645 -26579925 - MSTD LTR MaLR 0 396 3 866 154 13 98 chr21 8328670 8328904 -26578666 - L1MA8 LINE L1 -53 6238 6025 3184 197 10 13 chr21 8328924 8329194 -26578376 - L1MA8 LINE L1 -53 6238 5969 1278 233 38 10 chr21 8329194 8329482 -26578088 - AluJo SINE Alu -13 299 4 3184 197 10 13 chr21 8329482 8329891 -26577679 - L1MA8 LINE L1 -322 5969 5561 207 100 0 0 chr21 8330473 8330503 -26577067 + (TTA)n Simple_repeat Simple_repeat 2 31 0 958 163 0 0 chr21 8330505 8330658 -26576912 - FRAM SINE Alu -30 146 1 180 0 0 0 chr21 8330666 8330686 -26576884 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2154 135 0 0 chr21 8330696 8331008 -26576562 + AluSx SINE Alu 1 312 0 703 234 7 7 chr21 8331018 8331163 -26576407 + FRAM SINE Alu 1 145 -31 21 36 0 0 chr21 8332927 8332955 -26574615 + AT_rich Low_complexity Low_complexity 1 28 0 2458 41 3 3 chr21 8332955 8333250 -26574320 + AluY SINE Alu 1 295 -16 1505 173 78 33 chr21 8333423 8333782 -26573788 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr21 8334090 8334121 -26573449 + AT_rich Low_complexity Low_complexity 1 31 0 1265 261 18 5 chr21 8335539 8335938 -26571632 - L1MD3 LINE L1 -1 7994 7591 337 237 122 86 chr21 8336006 8336145 -26571425 + L1MC3 LINE L1 6572 6695 -1090 373 145 0 58 chr21 8336146 8336215 -26571355 + L1MD3 LINE L1 6742 6806 -1189 712 204 60 106 chr21 8336229 8336464 -26571106 - L1MD3 LINE L1 -435 7560 7337 2228 257 94 45 chr21 8336586 8337009 -26570561 - L1MC3 LINE L1 -632 7153 6752 2429 71 0 0 chr21 8337009 8337317 -26570253 + AluY SINE Alu 1 308 -3 2228 257 94 45 chr21 8337317 8337576 -26569994 - L1MC3 LINE L1 -1033 6752 6507 2482 47 7 0 chr21 8337576 8337874 -26569696 - AluY SINE Alu -11 300 1 2228 257 94 45 chr21 8337874 8338202 -26569368 - L1MC3 LINE L1 -1278 6507 6092 436 384 21 12 chr21 8339094 8339336 -26568234 + L2 LINE L2 892 1135 -2179 33 73 0 0 chr21 8339505 8339573 -26567997 + AT_rich Low_complexity Low_complexity 1 68 0 23 33 0 0 chr21 8339870 8339900 -26567670 + AT_rich Low_complexity Low_complexity 1 30 0 3521 63 0 0 chr21 8339930 8340377 -26567193 - L1PA7 LINE L1 -7 6147 5701 514 46 0 0 chr21 8340377 8340442 -26567128 + L1PA7 LINE L1 5631 5695 -477 1656 181 25 0 chr21 8340788 8341103 -26566467 - L1MC3 LINE L1 -22 7763 7441 24 85 0 0 chr21 8341160 8341219 -26566351 + AT_rich Low_complexity Low_complexity 1 59 0 856 234 0 30 chr21 8344291 8344488 -26563082 - MLT1B LTR MaLR -16 374 184 961 52 0 15 chr21 8345443 8345577 -26561993 + (GAAA)n Simple_repeat Simple_repeat 1 132 0 1282 206 49 31 chr21 8346175 8346461 -26561109 + MLT2B1 LTR ERVL 16 306 -214 25 0 0 0 chr21 8347312 8347337 -26560233 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 8347522 8347543 -26560027 + AT_rich Low_complexity Low_complexity 1 21 0 34 42 0 0 chr21 8347616 8347664 -26559906 + AT_rich Low_complexity Low_complexity 1 48 0 1378 220 26 36 chr21 8348542 8348849 -26558721 + MLT2B1 LTR ERVL 1 304 -216 7328 167 68 36 chr21 8348849 8349297 -26558273 - MER52A LTR ERV1 0 1755 1323 2275 114 0 0 chr21 8349297 8349604 -26557966 - AluSq SINE Alu -6 307 1 7328 167 68 36 chr21 8349604 8350788 -26556782 - MER52A LTR ERV1 -432 1323 1 868 222 66 28 chr21 8350788 8351000 -26556570 + MLT2B1 LTR ERVL 301 520 0 388 319 35 0 chr21 8352416 8352557 -26555013 - L1M4 LINE L1 -1870 4276 4131 2012 111 4 0 chr21 8352566 8352845 -26554725 - AluSg SINE Alu -11 299 20 734 73 29 15 chr21 8352959 8353095 -26554475 + (TCTA)n Simple_repeat Simple_repeat 1 138 0 741 298 28 17 chr21 8353239 8353699 -26553871 + L1ME1 LINE L1 2219 2683 -3463 32 67 0 0 chr21 8353812 8353872 -26553698 + AT_rich Low_complexity Low_complexity 1 60 0 265 182 26 13 chr21 8353972 8354049 -26553521 + (TA)n Simple_repeat Simple_repeat 2 79 0 240 217 109 22 chr21 8354057 8354149 -26553421 + L1ME1 LINE L1 4499 4598 -1548 39 50 0 0 chr21 8354437 8354497 -26553073 + AT_rich Low_complexity Low_complexity 1 60 0 2256 131 16 22 chr21 8354831 8355197 -26552373 + THE1B LTR MaLR 1 364 0 11460 96 7 1 chr21 8355197 8356768 -26550802 + THE1B-int LTR MaLR 1 1580 0 2090 153 16 25 chr21 8356768 8357135 -26550435 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr21 8357345 8357369 -26550201 + AT_rich Low_complexity Low_complexity 1 24 0 1564 120 0 4 chr21 8357599 8357840 -26549730 - L1PA13 LINE L1 -4 6159 5920 1272 99 11 5 chr21 8357840 8358031 -26549539 + L1PA13 LINE L1 5728 5919 -249 2357 60 0 17 chr21 8358191 8358491 -26549079 - AluY SINE Alu -16 295 1 2662 237 19 38 chr21 8359422 8360191 -26547379 + L1ME1 LINE L1 5408 6162 -4 216 97 0 0 chr21 8360827 8360858 -26546712 + (ATTG)n Simple_repeat Simple_repeat 4 34 0 624 164 27 9 chr21 8361167 8361277 -26546293 - FRAM SINE Alu -22 154 43 1918 177 5 18 chr21 8361882 8361931 -26545639 - L1MB3 LINE L1 -2 6181 6133 2397 130 67 24 chr21 8361931 8362347 -26545223 + MER57B LTR ERV1 1 434 0 1918 177 5 18 chr21 8362347 8362681 -26544889 - L1MB3 LINE L1 -50 6133 5803 2034 240 27 4 chr21 8362715 8363270 -26544300 - L1MB3 LINE L1 -837 5309 4742 347 147 133 0 chr21 8363269 8363344 -26544226 + L1M3 LINE L1 5350 5434 -749 8195 228 31 16 chr21 8363340 8366333 -26541237 + L1PA13 LINE L1 695 3755 -3042 201 39 0 0 chr21 8366333 8366359 -26541211 + (CAA)n Simple_repeat Simple_repeat 3 28 0 8195 228 31 16 chr21 8366359 8366594 -26540976 + L1PA13 LINE L1 3755 3985 -2812 1833 147 52 38 chr21 8366596 8366669 -26540901 + THE1C LTR MaLR 3 74 -301 5203 97 12 40 chr21 8366669 8367471 -26540099 - LTR17 LTR ERV1 0 780 1 1833 147 52 38 chr21 8367471 8367765 -26539805 + THE1C LTR MaLR 74 375 0 8425 150 66 11 chr21 8367765 8369263 -26538307 + THE1C-int LTR MaLR 1 1580 0 682 96 85 28 chr21 8369263 8369409 -26538161 + THE1C LTR MaLR 1 109 -266 412 303 57 58 chr21 8369412 8370609 -26536961 - L1MDb LINE L1 -4210 2051 819 494 292 64 47 chr21 8370623 8370856 -26536714 - L1MDb LINE L1 -5330 740 504 450 333 118 7 chr21 8370858 8371137 -26536433 - L1MDb LINE L1 -5589 481 172 263 91 0 0 chr21 8371765 8371798 -26535772 - U2 snRNA snRNA -155 33 1 28 61 0 0 chr21 8372323 8372372 -26535198 + AT_rich Low_complexity Low_complexity 1 49 0 213 211 0 0 chr21 8372372 8372424 -26535146 + (TA)n Simple_repeat Simple_repeat 1 52 0 2961 272 59 53 chr21 8372483 8373051 -26534519 + L1MB8 LINE L1 17 580 -6279 2034 110 0 0 chr21 8373051 8373332 -26534238 + AluSg SINE Alu 30 310 0 2961 272 59 53 chr21 8373332 8373919 -26533651 + L1MB8 LINE L1 580 1179 -5680 1521 207 18 67 chr21 8374366 8374619 -26532951 + MER39 LTR ERV1 340 570 -137 1692 181 0 21 chr21 8374619 8374942 -26532628 - AluSx SINE Alu 0 319 3 1521 207 18 67 chr21 8374942 8375074 -26532496 + MER39 LTR ERV1 570 707 0 840 252 79 34 chr21 8375113 8375586 -26531984 + L1MB8 LINE L1 2810 3311 -3646 573 120 11 0 chr21 8375633 8375725 -26531845 + MLT2B2 LTR ERVL 5 97 -418 2779 161 26 6 chr21 8375772 8376268 -26531302 - MER84 LTR ERV1 0 507 2 450 111 42 14 chr21 8376268 8376340 -26531230 - MER84 LTR ERVI -433 74 1 541 203 110 0 chr21 8376343 8376461 -26531109 + MLT2B1 LTR ERVL 312 442 -78 209 57 29 0 chr21 8376496 8376531 -26531039 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 1448 218 32 35 chr21 8376578 8377070 -26530500 + L1MB8 LINE L1 3371 3861 -3096 725 190 39 4 chr21 8377070 8377352 -26530218 + MLT1B LTR MaLR 1 318 -72 367 259 22 0 chr21 8377427 8377562 -26530008 + L1MB8 LINE L1 3858 3995 -2962 1265 275 28 26 chr21 8377715 8378216 -26529354 + L1MB8 LINE L1 4186 4687 -2270 3071 226 67 36 chr21 8378464 8378799 -26528771 + L1MB8 LINE L1 5170 5493 -1496 1641 191 7 7 chr21 8378799 8379098 -26528472 + AluJo SINE Alu 6 304 -8 3071 226 67 36 chr21 8379098 8379937 -26527633 + L1MB8 LINE L1 5493 6411 -578 2358 68 13 0 chr21 8379937 8380244 -26527326 + AluY SINE Alu 1 311 0 3071 226 67 36 chr21 8380244 8380837 -26526733 + L1MB8 LINE L1 6411 6984 -5 349 232 115 19 chr21 8381325 8381348 -26526222 - MLT1H LTR MaLR -4 563 544 5551 134 13 4 chr21 8381348 8382349 -26525221 + L1PA15 LINE L1 5157 6165 0 349 232 115 19 chr21 8382349 8382459 -26525111 - MLT1H LTR MaLR -23 544 420 2070 134 22 22 chr21 8382551 8383148 -26524422 + MER4A LTR ERV1 1 465 0 709 313 4 13 chr21 8383148 8383375 -26524195 - MLT1H LTR MaLR -253 296 72 34 42 0 0 chr21 8385138 8385186 -26522384 + AT_rich Low_complexity Low_complexity 1 48 0 3460 64 21 13 chr21 8386681 8387150 -26520420 + L1PA10 LINE L1 5694 6166 -2 21 36 0 0 chr21 8387160 8387188 -26520382 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr21 8387251 8387282 -26520288 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr21 8389225 8389248 -26518322 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 8390051 8390072 -26517498 + AT_rich Low_complexity Low_complexity 1 21 0 502 316 91 61 chr21 8391048 8391488 -26516082 + L1M4 LINE L1 3787 4239 -1907 24 53 0 0 chr21 8391759 8391797 -26515773 + AT_rich Low_complexity Low_complexity 1 38 0 847 270 21 62 chr21 8392108 8392619 -26514951 + L1MC3 LINE L1 6530 6953 -832 232 342 58 0 chr21 8392729 8392849 -26514721 + L1MC4 LINE L1 7316 7442 -600 22 56 0 0 chr21 8392909 8392945 -26514625 + AT_rich Low_complexity Low_complexity 1 36 0 313 241 115 47 chr21 8392989 8393180 -26514390 + L1MC4 LINE L1 7584 7787 -255 207 204 0 0 chr21 8393271 8393320 -26514250 + (TA)n Simple_repeat Simple_repeat 1 49 0 317 217 65 51 chr21 8393336 8393474 -26514096 + L1MC4 LINE L1 7902 8041 -1 243 0 0 0 chr21 8394097 8394124 -26513446 + (TG)n Simple_repeat Simple_repeat 1 27 0 7741 13 0 0 chr21 8394838 8396180 -26511390 - L1PA2 LINE L1 -2 6153 4814 8293 112 7 24 chr21 8396181 8397051 -26510519 + HSMAR1 DNA Mariner 96 941 -346 2272 87 3 3 chr21 8397051 8397360 -26510210 + AluY SINE Alu 1 309 -2 8293 112 7 24 chr21 8397360 8397702 -26509868 + HSMAR1 DNA Mariner 941 1287 0 208 143 0 0 chr21 8397802 8397837 -26509733 + (TG)n Simple_repeat Simple_repeat 2 36 0 25 51 0 0 chr21 8398194 8398233 -26509337 + AT_rich Low_complexity Low_complexity 1 39 0 28 29 0 0 chr21 8398783 8398818 -26508752 + AT_rich Low_complexity Low_complexity 1 35 0 1518 154 65 94 chr21 8399662 8400064 -26507506 - MLT1B LTR MaLR 0 390 1 291 321 122 23 chr21 8400289 8400420 -26507150 + MIR SINE MIR 8 151 -111 294 29 0 0 chr21 8401532 8401567 -26506003 + (TG)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr21 8401732 8401761 -26505809 + AT_rich Low_complexity Low_complexity 1 29 0 613 250 134 55 chr21 8401846 8402006 -26505564 + LTR33 LTR ERVL 1 147 -374 1369 195 19 73 chr21 8402006 8402416 -26505154 + MLT1B LTR MaLR 1 388 -2 613 250 134 55 chr21 8402416 8402547 -26505023 + LTR33 LTR ERVL 147 315 -206 1954 108 0 21 chr21 8402700 8402979 -26504591 - AluSq SINE Alu -17 296 24 233 231 48 19 chr21 8403061 8403165 -26504405 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 2316 129 11 24 chr21 8403317 8403697 -26503873 + THE1C LTR MaLR 1 375 0 2168 92 3 10 chr21 8404456 8404748 -26502822 + AluSq SINE Alu 13 302 -11 1873 110 0 0 chr21 8407569 8407833 -26499737 + AluSc SINE Alu 43 306 -3 1141 253 67 36 chr21 8407877 8408323 -26499247 - L1ME1 LINE L1 -4 6162 5703 453 205 0 0 chr21 8408409 8408521 -26499049 + (TA)n Simple_repeat Simple_repeat 1 112 0 332 191 15 0 chr21 8408524 8408592 -26498978 - L1MCa LINE L1 -4363 2063 1995 991 262 15 32 chr21 8408600 8409196 -26498374 - L1ME1 LINE L1 -588 5578 4995 1789 167 7 3 chr21 8409258 8409558 -26498012 - AluJo SINE Alu -11 301 1 430 241 46 84 chr21 8409674 8409968 -26497602 + MLT2C1 LTR ERVL 126 413 -1 388 282 0 19 chr21 8409971 8410074 -26497496 - L1ME1 LINE L1 -1230 4916 4816 2292 59 3 0 chr21 8410077 8410363 -26497207 - AluY SINE Alu -24 287 1 237 293 0 0 chr21 8410419 8410477 -26497093 - L1ME1 LINE L1 -1371 4775 4718 542 284 33 16 chr21 8411595 8411778 -26495792 - MER5A DNA MER1_type 0 189 4 904 203 173 5 chr21 8411860 8412062 -26495508 + MER8 DNA MER2_type 2 237 -2 2183 166 11 82 chr21 8412089 8412612 -26494958 - MER101B LTR ERV1 0 570 85 23 0 0 0 chr21 8413245 8413268 -26494302 + AT_rich Low_complexity Low_complexity 1 23 0 2156 113 3 0 chr21 8413620 8413922 -26493648 - AluSx SINE Alu -9 303 1 186 43 0 0 chr21 8414040 8414063 -26493507 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 23 0 0 0 chr21 8414357 8414380 -26493190 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr21 8414483 8414508 -26493062 + AT_rich Low_complexity Low_complexity 1 25 0 2371 156 32 28 chr21 8415722 8416153 -26491417 - Tigger2a DNA MER2_type -1 433 1 207 359 69 53 chr21 8416681 8417113 -26490457 + L2 LINE L2 2028 2466 -848 2207 102 3 0 chr21 8417130 8417424 -26490146 - AluSx SINE Alu -17 295 1 654 224 33 6 chr21 8418045 8418228 -26489342 + MER53 DNA DNA 2 189 0 2645 20 0 0 chr21 8418331 8418629 -26488941 + AluY SINE Alu 1 298 -13 1451 276 61 29 chr21 8419035 8419896 -26487674 - L1ME1 LINE L1 -5 6161 5258 2535 105 36 10 chr21 8420475 8420865 -26486705 + MLT2A1 LTR ERVL 1 400 -44 201 117 50 0 chr21 8420872 8420932 -26486638 + (TA)n Simple_repeat Simple_repeat 2 64 0 331 125 0 0 chr21 8420949 8420997 -26486573 + MLT2A1 LTR ERVL 473 520 0 17530 82 3 1 chr21 8420997 8423283 -26484287 + HERVL-A1 LTR ERVL 1 2290 -3364 263 213 75 43 chr21 8423523 8423617 -26483953 + MER52A LTR ERV1 1096 1192 -563 216 0 0 0 chr21 8424354 8424378 -26483192 + (A)n Simple_repeat Simple_repeat 1 24 0 312 356 78 15 chr21 8424617 8424822 -26482748 - MIR SINE MIR -44 218 1 22 35 0 0 chr21 8425277 8425306 -26482264 + AT_rich Low_complexity Low_complexity 1 29 0 218 176 20 0 chr21 8425324 8425375 -26482195 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 56 0 0 chr21 8426045 8426081 -26481489 + AT_rich Low_complexity Low_complexity 1 36 0 521 352 62 34 chr21 8426524 8426919 -26480651 - L2 LINE L2 -276 3037 2632 946 320 75 54 chr21 8427108 8427916 -26479654 - L2 LINE L2 0 3313 2475 280 241 0 0 chr21 8428193 8428247 -26479323 - L2 LINE L2 -2065 1249 1196 306 73 0 0 chr21 8428362 8428403 -26479167 + (T)n Simple_repeat Simple_repeat 1 41 0 530 191 25 96 chr21 8428814 8428971 -26478599 + MER49 LTR ERV1 5 150 -773 396 278 20 24 chr21 8428938 8429103 -26478467 + MER49 LTR ERV1 471 623 -99 216 122 0 0 chr21 8429245 8429286 -26478284 + (TG)n Simple_repeat Simple_repeat 2 42 0 1424 134 0 27 chr21 8429790 8430014 -26477556 - MER1B DNA MER1_type -2 337 120 290 26 26 0 chr21 8430014 8430022 -26477548 + (TG)n Simple_repeat Simple_repeat 1 48 0 290 26 26 0 chr21 8430022 8430061 -26477509 + (TG)n Simple_repeat Simple_repeat 2 41 0 341 173 0 13 chr21 8430143 8430218 -26477352 + (TA)n Simple_repeat Simple_repeat 1 74 0 13590 194 23 14 chr21 8430218 8433870 -26473700 - L1P5 LINE L1 -360 6507 2826 14863 142 26 3 chr21 8433878 8436305 -26471265 - L1P5 LINE L1 -4106 2757 275 1019 181 6 0 chr21 8436306 8436488 -26471082 - L1P5 LINE L1 -6678 185 3 405 229 70 38 chr21 8436563 8436720 -26470850 + L1ME3 LINE L1 6000 6161 -1 21 57 0 0 chr21 8437172 8437207 -26470363 + AT_rich Low_complexity Low_complexity 1 35 0 27 29 0 0 chr21 8437539 8437573 -26469997 + AT_rich Low_complexity Low_complexity 1 34 0 2227 97 7 0 chr21 8437590 8437889 -26469681 - AluSg SINE Alu -9 301 1 552 214 8 0 chr21 8437897 8438014 -26469556 + L1PA16 LINE L1 6048 6165 -1 1843 205 32 3 chr21 8439019 8439366 -26468204 - MLT1A1 LTR MaLR 0 365 9 565 316 87 0 chr21 8439485 8439716 -26467854 - MLT1I LTR MaLR 0 409 159 861 361 45 21 chr21 8441464 8442090 -26465480 - HERVL LTR ERVL -2257 3397 2757 2353 54 10 3 chr21 8442252 8442548 -26465022 + AluY SINE Alu 1 298 -13 1972 85 27 0 chr21 8444822 8445080 -26462490 + AluY SINE Alu 33 297 -14 366 23 0 0 chr21 8445696 8445739 -26461831 + (TG)n Simple_repeat Simple_repeat 2 44 0 2402 77 1 0 chr21 8445882 8446782 -26460788 - L1P LINE L1 -2515 3631 2551 4216 62 4 0 chr21 8446782 8447349 -26460221 + L1PA6 LINE L1 5605 6173 0 24 32 0 0 chr21 8447406 8447437 -26460133 + AT_rich Low_complexity Low_complexity 1 31 0 977 138 33 6 chr21 8447470 8447651 -26459919 + L1MA4 LINE L1 6109 6294 -6 23 0 0 0 chr21 8447693 8447716 -26459854 + AT_rich Low_complexity Low_complexity 1 23 0 1072 162 128 0 chr21 8447717 8447921 -26459649 - MER30 DNA MER1_type 0 230 1 21 36 0 0 chr21 8447960 8447988 -26459582 + AT_rich Low_complexity Low_complexity 1 28 0 1061 143 7 0 chr21 8448341 8448519 -26459051 - AluSg/x SINE Alu 0 308 130 2388 74 0 16 chr21 8448520 8448832 -26458738 - AluY SINE Alu -4 307 1 1410 160 4 9 chr21 8450436 8450667 -26456903 - MER4B LTR ERV1 0 610 381 599 139 0 30 chr21 8450808 8450909 -26456661 - MER4A LTR ERV1 -566 98 1 2567 83 53 6 chr21 8451340 8451700 -26455870 + MER51B LTR ERV1 1 377 0 267 312 40 87 chr21 8451996 8452071 -26455499 + L2 LINE L2 271 348 -2966 1887 123 3 40 chr21 8452071 8452371 -26455199 - AluY SINE Alu -22 289 1 267 312 40 87 chr21 8452371 8452468 -26455102 + L2 LINE L2 348 435 -2879 21 0 0 0 chr21 8452602 8452623 -26454947 + AT_rich Low_complexity Low_complexity 1 21 0 241 321 29 29 chr21 8453041 8453181 -26454389 + L2 LINE L2 1931 2070 -1244 296 47 0 23 chr21 8453269 8453312 -26454258 + (CA)n Simple_repeat Simple_repeat 1 42 0 613 81 0 0 chr21 8453455 8453541 -26454029 + MSTB1 LTR MaLR 1 86 -346 23 68 0 0 chr21 8454521 8454565 -26453005 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr21 8454783 8454827 -26452743 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr21 8455140 8455163 -26452407 + AT_rich Low_complexity Low_complexity 1 23 0 23 78 0 0 chr21 8455635 8455686 -26451884 + AT_rich Low_complexity Low_complexity 1 51 0 570 222 48 113 chr21 8455744 8456186 -26451384 - MER57A LTR ERV1 0 403 6 246 196 20 0 chr21 8456467 8456518 -26451052 + L2 LINE L2 3261 3312 -1 23 0 0 0 chr21 8457305 8457328 -26450242 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr21 8458280 8458303 -26449267 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr21 8458879 8458907 -26448663 + AT_rich Low_complexity Low_complexity 1 28 0 30 45 0 0 chr21 8459100 8459144 -26448426 + AT_rich Low_complexity Low_complexity 1 44 0 33 73 0 0 chr21 8459194 8459262 -26448308 + AT_rich Low_complexity Low_complexity 1 68 0 802 178 0 15 chr21 8459370 8459505 -26448065 - FLAM_C SINE Alu 0 133 1 330 115 0 0 chr21 8459536 8459588 -26447982 + (TTCC)n Simple_repeat Simple_repeat 1 52 0 2029 135 10 3 chr21 8459588 8459891 -26447679 - AluSx SINE Alu -7 305 1 34 0 0 0 chr21 8460277 8460311 -26447259 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr21 8460359 8460395 -26447175 + AT_rich Low_complexity Low_complexity 1 36 0 1760 73 0 9 chr21 8461056 8461330 -26446240 - AluSx SINE Alu 0 323 52 389 282 33 70 chr21 8462127 8462340 -26445230 + HAL1 LINE L1 1515 1719 -788 21 36 0 0 chr21 8463039 8463067 -26444503 + AT_rich Low_complexity Low_complexity 1 28 0 43 20 0 0 chr21 8463643 8463693 -26443877 + AT_rich Low_complexity Low_complexity 1 50 0 1944 95 7 28 chr21 8465243 8465564 -26442006 + AluSc SINE Alu 2 316 0 2014 163 27 57 chr21 8466485 8466926 -26440644 + MSTC LTR MaLR 1 428 0 28 29 0 0 chr21 8467027 8467062 -26440508 + AT_rich Low_complexity Low_complexity 1 35 0 1867 163 96 27 chr21 8467233 8467638 -26439932 - Tigger2a DNA MER2_type 0 434 2 2123 80 40 0 chr21 8467895 8468171 -26439399 + AluY SINE Alu 1 287 -24 294 73 0 0 chr21 8468171 8468212 -26439358 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr21 8468629 8468650 -26438920 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr21 8468917 8468944 -26438626 + AT_rich Low_complexity Low_complexity 1 27 0 324 292 14 0 chr21 8469185 8469257 -26438313 + MER5A DNA MER1_type 9 81 -108 1677 306 59 38 chr21 8469386 8470367 -26437203 + L1PBa LINE L1 -656 345 -5859 962 258 14 21 chr21 8470383 8470960 -26436610 + L1PBa LINE L1 1 994 -5210 1587 174 177 11 chr21 8470960 8471327 -26436243 - MSTA LTR MaLR 0 428 1 5278 144 13 9 chr21 8471327 8472165 -26435405 - MSTA-int LTR MaLR 0 1580 740 838 220 10 24 chr21 8472171 8472384 -26435186 - MSTA-int LTR MaLR -1154 426 280 3573 143 23 64 chr21 8472376 8473084 -26434486 - THE1-int LTR MaLR -899 681 3 4209 190 41 14 chr21 8473325 8474451 -26433119 + L1PB3 LINE L1 215 1309 -4894 2129 153 16 11 chr21 8474451 8474824 -26432746 + THE1C LTR MaLR 1 375 0 4209 190 41 14 chr21 8474824 8475014 -26432556 + L1PB3 LINE L1 1309 3355 -2848 503 147 0 86 chr21 8475020 8475136 -26432434 + MER50 LTR ERV1 499 604 -130 3532 223 10 42 chr21 8475140 8476002 -26431568 + L1PB3 LINE L1 3346 4179 -2024 7176 49 1 0 chr21 8476002 8477432 -26430138 - L1PA5 LINE L1 0 6154 4724 3532 223 10 42 chr21 8477432 8477483 -26430087 + L1PB3 LINE L1 4179 4230 -1973 5573 181 10 7 chr21 8477479 8479526 -26428044 + L1PB3 LINE L1 4157 6204 -7 24 0 0 0 chr21 8479529 8479553 -26428017 + AT_rich Low_complexity Low_complexity 1 24 0 714 229 86 6 chr21 8479719 8479894 -26427676 + MER5A DNA MER1_type 1 189 0 315 146 0 0 chr21 8480369 8480424 -26427146 + (TA)n Simple_repeat Simple_repeat 2 56 0 2414 97 0 0 chr21 8480567 8480876 -26426694 + AluSx SINE Alu 1 309 -3 2173 47 32 0 chr21 8480933 8481212 -26426358 + L1PA3 LINE L1 5868 6155 0 23 0 0 0 chr21 8482168 8482191 -26425379 + AT_rich Low_complexity Low_complexity 1 23 0 258 56 0 0 chr21 8483823 8483859 -26423711 + (GA)n Simple_repeat Simple_repeat 1 36 0 23 0 0 0 chr21 8484062 8484085 -26423485 + AT_rich Low_complexity Low_complexity 1 23 0 222 105 0 0 chr21 8484764 8484802 -26422768 + (A)n Simple_repeat Simple_repeat 1 38 0 28 61 0 0 chr21 8484943 8484992 -26422578 + AT_rich Low_complexity Low_complexity 1 49 0 253 333 79 44 chr21 8485404 8485632 -26421938 - L2 LINE L2 -418 2896 2661 1057 253 45 92 chr21 8485636 8485920 -26421650 + MLT1E3 LTR MaLR 2 298 -326 1854 193 62 31 chr21 8485920 8486339 -26421231 - MSTB1 LTR MaLR 0 432 1 1057 253 45 92 chr21 8486339 8486731 -26420839 + MLT1E3 LTR MaLR 298 624 0 371 205 0 0 chr21 8487875 8487985 -26419585 + MLT1E3 LTR MaLR 62 189 -438 857 201 22 112 chr21 8488109 8488329 -26419241 + MLT1E3 LTR MaLR 380 573 -51 1908 234 74 10 chr21 8488329 8488371 -26419199 - MLT2B2 LTR ERVL 0 515 477 246 81 0 0 chr21 8488371 8488408 -26419162 + (CA)n Simple_repeat Simple_repeat 2 38 0 1908 234 74 10 chr21 8488408 8488849 -26418721 - MLT2B2 LTR ERVL -38 477 1 857 201 22 112 chr21 8488849 8488897 -26418673 + MLT1E3 LTR MaLR 573 624 0 198 360 22 7 chr21 8488905 8489044 -26418526 + L2 LINE L2 2238 2378 -936 429 276 31 0 chr21 8490362 8490489 -26417081 + L1MD1 LINE L1 6060 6190 -52 4736 184 24 8 chr21 8490494 8491729 -26415841 - L1PB4 LINE L1 -8 6148 4892 867 284 141 72 chr21 8491777 8491976 -26415594 + L2 LINE L2 1764 1948 -1366 2222 94 0 13 chr21 8491976 8492274 -26415296 - AluSc SINE Alu -13 296 3 867 284 141 72 chr21 8492274 8492777 -26414793 + L2 LINE L2 1948 2514 -800 322 284 21 21 chr21 8493842 8493937 -26413633 + L2 LINE L2 2530 2624 -690 2107 102 0 24 chr21 8494049 8494344 -26413226 + AluSc SINE Alu 1 288 -21 1830 132 14 7 chr21 8494449 8494744 -26412826 + AluSg SINE Alu 2 298 -12 28 29 0 0 chr21 8495141 8495176 -26412394 + AT_rich Low_complexity Low_complexity 1 35 0 319 207 109 35 chr21 8495866 8496040 -26411530 + HAL1 LINE L1 950 1136 -1371 343 290 30 59 chr21 8496217 8496386 -26411184 + HAL1 LINE L1 1399 1562 -945 695 325 50 54 chr21 8496476 8496996 -26410574 + HAL1 LINE L1 1988 2505 -2 690 216 6 41 chr21 8498080 8498251 -26409319 - MLT-int LTR MaLR -903 832 668 2380 46 7 10 chr21 8498248 8498552 -26409018 - AluY SINE Alu -8 303 1 203 211 39 31 chr21 8499436 8499564 -26408006 + CT-rich Low_complexity Low_complexity 4 132 0 1649 264 29 3 chr21 8500526 8500905 -26406665 + MER70B LTR ERVL 1 389 -189 267 181 208 14 chr21 8500892 8500964 -26406606 - MLT1A1 LTR MaLR -279 86 1 425 200 8 58 chr21 8501046 8501166 -26406404 - MLT1C LTR MaLR -353 114 1 22 56 0 0 chr21 8501167 8501203 -26406367 + AT_rich Low_complexity Low_complexity 1 36 0 763 41 0 0 chr21 8501507 8501605 -26405965 - L1PA4 LINE L1 0 6155 6058 209 243 14 14 chr21 8502625 8502695 -26404875 + (TCTA)n Simple_repeat Simple_repeat 3 72 0 773 284 120 28 chr21 8502791 8503183 -26404387 - MLT1D LTR MaLR -39 428 22 382 202 12 0 chr21 8503333 8503413 -26404157 - MER96B DNA MER1_type? -192 225 145 1493 194 47 26 chr21 8503413 8503753 -26403817 - MLT1A1 LTR MaLR 0 365 19 1185 251 70 44 chr21 8504004 8504578 -26402992 - L1MC4 LINE L1 -424 7618 7030 537 323 15 20 chr21 8504582 8504780 -26402790 - L1MC4 LINE L1 -1049 6993 6797 323 320 70 11 chr21 8504780 8505140 -26402430 - L1ME LINE L1 -4825 1821 1438 49 18 0 0 chr21 8505183 8505239 -26402331 + AT_rich Low_complexity Low_complexity 1 56 0 342 362 60 37 chr21 8505667 8505965 -26401605 - L1ME LINE L1 -5760 874 570 2272 50 3 7 chr21 8506923 8507220 -26400350 + AluY SINE Alu 1 296 -15 249 116 43 0 chr21 8507222 8507291 -26400279 + (TA)n Simple_repeat Simple_repeat 2 73 0 719 297 75 67 chr21 8509450 8509941 -26397629 + Charlie2 DNA MER1_type 95 589 -2193 393 319 29 58 chr21 8510150 8510391 -26397179 + L2 LINE L2 2511 2744 -570 24 67 0 0 chr21 8512600 8512645 -26394925 + AT_rich Low_complexity Low_complexity 1 45 0 28 61 0 0 chr21 8512713 8512762 -26394808 + AT_rich Low_complexity Low_complexity 1 49 0 902 261 59 63 chr21 8514849 8514876 -26392694 + L1MD1 LINE L1 19 45 -6378 2424 232 4 22 chr21 8514876 8515427 -26392143 - MER87 LTR ERV1 0 541 1 902 261 59 63 chr21 8515427 8515858 -26391712 + L1MD1 LINE L1 45 475 -5948 381 22 0 0 chr21 8516262 8516308 -26391262 + (CA)n Simple_repeat Simple_repeat 2 47 0 594 237 96 92 chr21 8516308 8516523 -26391047 + L1MD1 LINE L1 4482 4695 -2246 1892 144 14 0 chr21 8516523 8516807 -26390763 + AluSx SINE Alu 1 288 -24 594 237 96 92 chr21 8516807 8517145 -26390425 + L1MD1 LINE L1 4695 5040 -1901 1816 197 23 41 chr21 8517159 8517601 -26389969 + L1MD1 LINE L1 6366 6799 -355 786 182 30 6 chr21 8517607 8517772 -26389798 + L1MD1 LINE L1 6851 7019 -18 7902 17 0 0 chr21 8517922 8519388 -26388182 - L1HS LINE L1 -2 6153 4688 4741 20 0 0 chr21 8519382 8519941 -26387629 + L1P LINE L1 4177 4735 -1411 25 0 0 0 chr21 8520160 8520185 -26387385 + AT_rich Low_complexity Low_complexity 1 25 0 2174 113 27 0 chr21 8520545 8520880 -26386690 - L1PA15 LINE L1 -196 5969 5626 1281 112 5 0 chr21 8520880 8521066 -26386504 + L1PA15 LINE L1 5973 6160 -5 344 22 22 0 chr21 8521714 8521759 -26385811 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 420 169 14 0 chr21 8521774 8521845 -26385725 - L1PA8 LINE L1 -200 5972 5901 769 285 55 29 chr21 8522261 8522535 -26385035 + MLT1I LTR MaLR 117 397 -12 24 0 0 0 chr21 8522660 8522684 -26384886 + AT_rich Low_complexity Low_complexity 1 24 0 560 309 65 23 chr21 8523095 8523357 -26384213 + L1MCb LINE L1 1 273 -5772 1750 88 133 236 chr21 8523359 8523973 -26383597 + LTR12 LTR ERV1 15 538 -133 1069 292 39 17 chr21 8523973 8524516 -26383054 + L1MCb LINE L1 960 1573 -4889 1751 154 197 7 chr21 8524768 8525184 -26382386 + LTR54B LTR ERV1 3 497 -1 21 0 0 0 chr21 8528045 8528066 -26379504 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr21 8528515 8528545 -26379025 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 2056 115 0 3 chr21 8528683 8528978 -26378592 - AluSg SINE Alu -16 294 1 203 79 26 0 chr21 8530404 8530442 -26377128 + (TTTTA)n Simple_repeat Simple_repeat 3 41 0 41 72 0 0 chr21 8530866 8530949 -26376621 + AT_rich Low_complexity Low_complexity 1 83 0 28 29 0 0 chr21 8531102 8531137 -26376433 + AT_rich Low_complexity Low_complexity 1 35 0 850 233 72 40 chr21 8531382 8531730 -26375840 - LTR25 LTR ERV1 -21 773 415 261 180 180 0 chr21 8531701 8531762 -26375808 - MER51A LTR ERV1 -354 280 209 234 254 0 15 chr21 8531755 8531822 -26375748 - LTR27 LTR ERV1 -418 218 153 331 331 65 56 chr21 8532211 8532251 -26375319 - MLT1J LTR MaLR -48 463 425 575 97 0 11 chr21 8532251 8532344 -26375226 + (TA)n Simple_repeat Simple_repeat 2 93 0 331 331 65 56 chr21 8532344 8532626 -26374944 - MLT1J LTR MaLR -86 425 138 272 179 0 24 chr21 8532632 8532716 -26374854 + (TATAA)n Simple_repeat Simple_repeat 4 85 0 23 0 0 0 chr21 8532792 8532815 -26374755 + AT_rich Low_complexity Low_complexity 1 23 0 1042 160 17 0 chr21 8532846 8533021 -26374549 + MER82 DNA MER2_type 54 231 -422 279 54 0 0 chr21 8533421 8533458 -26374112 + (CA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr21 8533507 8533528 -26374042 + AT_rich Low_complexity Low_complexity 1 21 0 233 125 0 0 chr21 8533831 8533863 -26373707 - MER70A LTR ERVL 0 472 441 2059 234 55 4 chr21 8533861 8534314 -26373256 - MER70B LTR ERVL -102 476 1 29 28 0 0 chr21 8535125 8535161 -26372409 + AT_rich Low_complexity Low_complexity 1 36 0 214 198 21 31 chr21 8535268 8535364 -26372206 + GA-rich Low_complexity Low_complexity 2 96 0 446 123 0 14 chr21 8535732 8535805 -26371765 - L1PA14 LINE L1 -28 6133 6062 1317 147 4 4 chr21 8535805 8536056 -26371514 + L1P LINE L1 5128 5378 -768 3134 234 82 69 chr21 8536595 8537651 -26369919 + MSTD-int LTR MaLR 666 1735 0 411 285 23 23 chr21 8537651 8537781 -26369789 + MSTD LTR MaLR 1 130 -298 835 216 23 6 chr21 8537817 8537993 -26369577 + MSTD LTR MaLR 218 396 0 232 303 83 15 chr21 8539231 8539363 -26368207 + L2 LINE L2 1284 1424 -1890 2263 81 3 0 chr21 8540323 8540618 -26366952 - AluSp SINE Alu -17 296 1 2232 97 10 3 chr21 8541295 8541603 -26365967 - AluSx SINE Alu -2 310 1 262 161 71 0 chr21 8541751 8541807 -26365763 + MLT1J1 LTR MaLR 385 444 -2 24 91 0 0 chr21 8542128 8542194 -26365376 + AT_rich Low_complexity Low_complexity 1 66 0 192 152 0 0 chr21 8543333 8543366 -26364204 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 33 43 0 0 chr21 8543583 8543630 -26363940 + AT_rich Low_complexity Low_complexity 1 47 0 2183 94 0 0 chr21 8544542 8544961 -26362609 + AluSq SINE Alu 2 420 0 237 260 68 89 chr21 8545860 8546006 -26361564 - MIR SINE MIR -16 246 104 249 108 0 0 chr21 8546620 8546657 -26360913 + (CA)n Simple_repeat Simple_repeat 2 38 0 522 0 0 0 chr21 8547962 8548020 -26359550 + (TTTTC)n Simple_repeat Simple_repeat 2 59 0 408 20 0 0 chr21 8548911 8548960 -26358610 + (CA)n Simple_repeat Simple_repeat 2 50 0 191 299 39 39 chr21 8549423 8549500 -26358070 + L2 LINE L2 3190 3266 -47 1055 157 47 51 chr21 8549654 8549890 -26357680 - AluJo SINE Alu -24 288 54 23 0 0 0 chr21 8550037 8550060 -26357510 + AT_rich Low_complexity Low_complexity 1 23 0 10106 186 29 17 chr21 8550071 8553372 -26354198 - L1MA5 LINE L1 -2 7000 3665 13402 122 9 2 chr21 8553386 8556217 -26351353 - L1PA8A LINE L1 0 6131 3273 3072 166 5 7 chr21 8556218 8556791 -26350779 + L1PA8A LINE L1 2681 3252 -2894 232 236 55 87 chr21 8556785 8556912 -26350658 - L1PA8A LINE L1 -3172 2974 2852 1093 254 36 4 chr21 8556979 8557259 -26350311 - L1MA5 LINE L1 -3331 3517 3229 1788 148 22 0 chr21 8557271 8557542 -26350028 - AluSx SINE Alu -13 299 23 285 238 0 0 chr21 8557578 8557641 -26349929 - L1MA5 LINE L1 -3857 2991 2929 5945 184 33 34 chr21 8557670 8557712 -26349858 - L1MA5 LINE L1 -3945 2904 2863 1824 149 7 0 chr21 8557712 8558014 -26349556 + AluSx SINE Alu 4 307 0 5945 184 33 34 chr21 8558014 8558999 -26348571 - L1MA5 LINE L1 -3986 2863 1873 2256 176 26 9 chr21 8558999 8559420 -26348150 - MSTA LTR MaLR 0 428 1 5945 184 33 34 chr21 8559420 8559858 -26347712 - L1MA5 LINE L1 -4976 1873 1436 323 372 67 54 chr21 8559886 8560075 -26347495 - L1MA5 LINE L1 -5631 1218 860 1530 279 31 40 chr21 8560263 8560808 -26346762 - L1MA5 LINE L1 -6299 550 11 22 88 0 0 chr21 8561375 8561432 -26346138 + AT_rich Low_complexity Low_complexity 1 57 0 22 80 0 0 chr21 8562297 8562347 -26345223 + AT_rich Low_complexity Low_complexity 1 50 0 2154 68 20 10 chr21 8562518 8562812 -26344758 - AluY SINE Alu -14 297 1 23 0 0 0 chr21 8563513 8563536 -26344034 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr21 8563597 8563618 -26343952 + AT_rich Low_complexity Low_complexity 1 21 0 694 204 0 8 chr21 8567077 8567209 -26340361 + FLAM_C SINE Alu 1 131 -12 31 26 0 0 chr21 8567210 8567248 -26340322 + AT_rich Low_complexity Low_complexity 1 38 0 1663 185 11 0 chr21 8567737 8568023 -26339547 - AluJb SINE Alu -17 295 7 647 281 6 6 chr21 8568557 8568724 -26338846 - MIR SINE MIR -44 218 52 27 29 0 0 chr21 8569172 8569206 -26338364 + AT_rich Low_complexity Low_complexity 1 34 0 2091 111 0 29 chr21 8569260 8569566 -26338004 - AluSq SINE Alu -16 297 1 200 326 11 86 chr21 8569837 8570012 -26337558 - MIR SINE MIR -91 171 10 3648 188 116 33 chr21 8571726 8572581 -26334989 - MER21A LTR ERV1 0 931 6 2410 75 13 0 chr21 8572627 8572964 -26334606 + AluSp SINE Alu 2 342 0 457 282 68 59 chr21 8573703 8574245 -26333325 + L1M4 LINE L1 2299 2845 -3301 408 20 0 0 chr21 8574484 8574533 -26333037 + (CA)n Simple_repeat Simple_repeat 2 50 0 1343 171 66 58 chr21 8575743 8576105 -26331465 - MLT1A1 LTR MaLR 0 365 1 3947 170 80 17 chr21 8576603 8577349 -26330221 + MER54B LTR ERVL 1 793 0 29 0 0 0 chr21 8579292 8579321 -26328249 + AT_rich Low_complexity Low_complexity 1 29 0 261 267 11 22 chr21 8579646 8579736 -26327834 + (TATATG)n Simple_repeat Simple_repeat 5 93 0 2287 160 13 61 chr21 8580032 8580488 -26327082 - Tigger2 DNA MER2_type 0 2718 1 2054 91 14 11 chr21 8580782 8581103 -26326467 + AluSq SINE Alu 7 328 0 2002 110 3 27 chr21 8581402 8581701 -26325869 + AluSg SINE Alu 1 292 -18 21 36 0 0 chr21 8582025 8582053 -26325517 + AT_rich Low_complexity Low_complexity 1 28 0 653 124 0 9 chr21 8582353 8582458 -26325112 + AluSg/x SINE Alu 196 299 -10 23 0 0 0 chr21 8582514 8582537 -26325033 + AT_rich Low_complexity Low_complexity 1 23 0 2283 95 3 0 chr21 8582950 8583256 -26324314 - AluSp SINE Alu -5 308 2 27 49 0 0 chr21 8583982 8584023 -26323547 + AT_rich Low_complexity Low_complexity 1 41 0 386 230 101 22 chr21 8586590 8586729 -26320841 - MER110A LTR ERV1 -275 193 44 1832 191 2 72 chr21 8586729 8587143 -26320427 + MLT1B LTR MaLR 1 385 -5 26 30 0 0 chr21 8587320 8587353 -26320217 + AT_rich Low_complexity Low_complexity 1 33 0 2061 122 0 16 chr21 8587638 8587961 -26319609 - AluSg1 SINE Alu 0 309 5 1690 214 6 26 chr21 8587966 8588316 -26319254 - MLT1A1 LTR MaLR -13 352 10 289 301 77 56 chr21 8588327 8588470 -26319100 + MER5B DNA MER1_type 6 151 -27 1230 228 83 8 chr21 8588717 8589072 -26318498 - LTR2 LTR ERV1 0 490 58 3766 51 45 0 chr21 8589317 8589786 -26317784 + LTR2B LTR ERV1 1 490 0 23 33 0 0 chr21 8590130 8590160 -26317410 + AT_rich Low_complexity Low_complexity 1 30 0 482 306 66 24 chr21 8590953 8591241 -26316329 + L1M4 LINE L1 2 301 -6241 857 284 80 34 chr21 8591265 8591701 -26315869 + L1M4 LINE L1 357 812 -5730 1893 195 64 36 chr21 8591855 8592049 -26315521 + L1MB5 LINE L1 5282 5469 -705 3059 98 12 58 chr21 8592049 8592229 -26315341 - L1PA13 LINE L1 -8 6155 5968 1457 191 122 22 chr21 8592229 8592638 -26314932 + LTR7 LTR ERV1 1 450 0 3059 98 12 58 chr21 8592638 8592957 -26314613 - L1PA13 LINE L1 -195 5968 5679 636 38 0 0 chr21 8592958 8593037 -26314533 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 1893 195 64 36 chr21 8593037 8593338 -26314232 + L1MB5 LINE L1 5469 5797 -377 294 29 0 0 chr21 8593338 8593373 -26314197 + (CA)n Simple_repeat Simple_repeat 2 36 0 1893 195 64 36 chr21 8593373 8593407 -26314163 + L1MB5 LINE L1 5797 5829 -345 1213 231 43 67 chr21 8593409 8593428 -26314142 + MLT1A1 LTR MaLR 2 20 -345 2176 170 59 2 chr21 8593428 8593833 -26313737 - MSTC LTR MaLR 0 428 1 1213 231 43 67 chr21 8593833 8594186 -26313384 + MLT1A1 LTR MaLR 20 365 0 1460 182 34 62 chr21 8594186 8594538 -26313032 + L1MB5 LINE L1 5826 6167 -7 276 267 93 56 chr21 8594837 8594998 -26312572 + MER34 LTR ERV1 11 177 -365 629 146 29 0 chr21 8595006 8595109 -26312461 + MER4E LTR ERV1 661 766 0 21 0 0 0 chr21 8595896 8595917 -26311653 + AT_rich Low_complexity Low_complexity 1 21 0 1643 232 41 60 chr21 8597345 8597909 -26309661 - MER21B LTR ERV1 -27 836 284 355 264 0 0 chr21 8598145 8598217 -26309353 - MER21B LTR ERV1 -773 90 19 27 0 0 0 chr21 8598303 8598330 -26309240 + AT_rich Low_complexity Low_complexity 1 27 0 403 175 124 124 chr21 8598357 8598551 -26309019 + LTR49 LTR ERV1 402 595 0 934 264 11 39 chr21 8598571 8598738 -26308832 - MER93a LTR ERV1 0 402 245 2363 143 3 3 chr21 8598738 8599101 -26308469 + THE1B LTR MaLR 2 364 0 934 264 11 39 chr21 8599101 8599217 -26308353 - MER93a LTR ERV1 -157 245 127 279 150 0 0 chr21 8599323 8599383 -26308187 + (TA)n Simple_repeat Simple_repeat 1 60 0 25 51 0 0 chr21 8600143 8600182 -26307388 + AT_rich Low_complexity Low_complexity 1 39 0 2380 77 0 3 chr21 8600382 8600682 -26306888 - AluY SINE Alu -12 299 1 357 330 49 22 chr21 8600838 8601023 -26306547 + L1M4 LINE L1 3912 4101 -2045 195 222 0 0 chr21 8601681 8601726 -26305844 + (TATATG)n Simple_repeat Simple_repeat 3 47 0 25 0 0 0 chr21 8602567 8602592 -26304978 + AT_rich Low_complexity Low_complexity 1 25 0 558 261 56 48 chr21 8603391 8603786 -26303784 - L1M4 LINE L1 -2793 3353 2956 948 232 79 85 chr21 8604051 8604434 -26303136 + MLT1C LTR MaLR 1 382 -85 2124 128 0 22 chr21 8604434 8604746 -26302824 - AluSx SINE Alu -7 305 1 948 232 79 85 chr21 8604746 8604832 -26302738 + MLT1C LTR MaLR 382 467 0 704 330 31 3 chr21 8604861 8605152 -26302418 - L1MCb LINE L1 -4851 1194 896 300 342 27 0 chr21 8605339 8605450 -26302120 - L1MCb LINE L1 -5902 143 30 467 92 100 0 chr21 8605710 8605943 -26301627 + (TA)n Simple_repeat Simple_repeat 1 256 0 550 146 37 30 chr21 8605944 8606108 -26301462 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 491 100 85 7 chr21 8606114 8606875 -26300695 + (TA)n Simple_repeat Simple_repeat 1 820 0 381 209 34 23 chr21 8606904 8607081 -26300489 + (TA)n Simple_repeat Simple_repeat 2 180 0 412 222 29 23 chr21 8607002 8607173 -26300397 + (TTATA)n Simple_repeat Simple_repeat 3 174 0 352 116 79 6 chr21 8607174 8607338 -26300232 + (TA)n Simple_repeat Simple_repeat 1 176 0 21 36 0 0 chr21 8607643 8607671 -26299899 + AT_rich Low_complexity Low_complexity 1 28 0 3210 147 18 43 chr21 8607698 8608318 -26299252 + L1MA3 LINE L1 5696 6299 -6 924 234 56 31 chr21 8608558 8608903 -26298667 - MLT1A2 LTR MaLR -5 385 1 314 80 20 0 chr21 8609016 8609066 -26298504 + (CA)n Simple_repeat Simple_repeat 2 52 0 2164 101 0 0 chr21 8609827 8610113 -26297457 + AluSx SINE Alu 27 312 0 3655 102 2 4 chr21 8611118 8611627 -26295943 - MER9 LTR ERVK 0 511 4 216 0 0 0 chr21 8611627 8611651 -26295919 + (CA)n Simple_repeat Simple_repeat 2 25 0 408 319 47 43 chr21 8612136 8612390 -26295180 + MIR SINE MIR 1 255 -7 584 227 33 74 chr21 8612610 8613047 -26294523 - MLT1D LTR MaLR 0 505 1 21 0 0 0 chr21 8614171 8614192 -26293378 + AT_rich Low_complexity Low_complexity 1 21 0 2162 123 0 7 chr21 8614201 8614511 -26293059 + AluSq SINE Alu 2 309 -4 241 341 89 7 chr21 8615153 8615288 -26292282 - HAL1 LINE L1 -1618 889 744 2061 239 96 13 chr21 8616418 8617053 -26290517 - MER76 LTR ERV 0 688 1 606 288 14 0 chr21 8617122 8617268 -26290302 + MIR SINE MIR 4 151 -111 1415 221 69 20 chr21 8617904 8618252 -26289318 + MLT1A1 LTR MaLR 1 365 0 22 35 0 0 chr21 8618524 8618553 -26289017 + AT_rich Low_complexity Low_complexity 1 29 0 261 0 0 0 chr21 8618823 8618852 -26288718 + (TA)n Simple_repeat Simple_repeat 1 29 0 401 102 17 0 chr21 8620256 8620315 -26287255 + MLT2A2 LTR ERVL 1 60 -393 679 65 0 0 chr21 8620316 8620408 -26287162 + AluY SINE Alu 212 303 -8 1667 187 21 38 chr21 8620411 8620917 -26286653 + MLT2A2 LTR ERVL 54 554 0 458 79 0 0 chr21 8621503 8621566 -26286004 - L1P3 LINE L1 -742 5430 5368 1992 134 0 0 chr21 8621566 8621879 -26285691 - L1P3 LINE L1 -1087 5059 4747 1975 143 3 10 chr21 8622531 8622839 -26284731 + AluSx SINE Alu 1 306 -6 2175 208 30 56 chr21 8623235 8623806 -26283764 - MER89 LTR ERV1 0 559 4 1820 61 0 0 chr21 8623920 8624148 -26283422 - L1PA7 LINE L1 -8 6146 5919 369 207 0 0 chr21 8626746 8626833 -26280737 + (CA)n Simple_repeat Simple_repeat 2 88 0 25 0 0 0 chr21 8626864 8626889 -26280681 + AT_rich Low_complexity Low_complexity 1 25 0 2686 191 16 14 chr21 8627079 8627644 -26279926 - L1MB3 LINE L1 -1 6182 5617 240 385 67 15 chr21 8628106 8628301 -26279269 + L2 LINE L2 2971 3175 -138 213 39 0 0 chr21 8630230 8630256 -26277314 + (GA)n Simple_repeat Simple_repeat 2 27 0 23 33 0 0 chr21 8630708 8630738 -26276832 + AT_rich Low_complexity Low_complexity 1 30 0 722 223 51 6 chr21 8630878 8631053 -26276517 + L1PB4 LINE L1 5902 6084 -72 1657 189 10 0 chr21 8632248 8632539 -26275031 - AluJb SINE Alu -16 296 3 458 197 88 36 chr21 8632587 8632724 -26274846 - L1 LINE L1 -1067 5079 4936 2063 191 98 7 chr21 8632724 8633144 -26274426 + LTR32 LTR ERVL 14 471 0 5266 173 22 3 chr21 8633149 8634183 -26273387 - L1 LINE L1 -1212 4934 3881 5064 170 30 28 chr21 8634181 8634546 -26273024 + L1MA4 LINE L1 5075 5438 -862 2849 10 0 0 chr21 8634546 8634859 -26272711 - AluYb8 SINE Alu -5 313 1 5064 170 30 28 chr21 8634859 8635678 -26271892 + L1MA4 LINE L1 5438 6266 -34 2109 183 52 0 chr21 8635678 8636083 -26271487 - MSTB LTR MaLR 0 426 1 5064 170 30 28 chr21 8636083 8636113 -26271457 + L1MA4 LINE L1 6266 6294 -6 425 242 42 102 chr21 8636232 8636566 -26271004 + L1ME1 LINE L1 1747 2060 -4480 318 148 0 0 chr21 8636585 8636639 -26270931 + (CATA)n Simple_repeat Simple_repeat 3 56 0 29 0 0 0 chr21 8636646 8636675 -26270895 + AT_rich Low_complexity Low_complexity 1 29 0 684 275 56 28 chr21 8636846 8637275 -26270295 + L1ME1 LINE L1 2406 2846 -3875 1032 241 37 62 chr21 8637412 8637733 -26269837 + L1ME1 LINE L1 5893 6203 -357 946 156 6 39 chr21 8637733 8637913 -26269657 + L1PA16 LINE L1 5992 6165 -1 1032 241 37 62 chr21 8637913 8637997 -26269573 + L1ME1 LINE L1 6203 6288 -272 557 301 41 32 chr21 8638032 8638278 -26269292 + L1ME1 LINE L1 6302 6549 -11 1326 159 15 8 chr21 8638383 8638647 -26268923 - L1MA4 LINE L1 -1 6299 6034 2191 88 3 10 chr21 8639064 8639359 -26268211 - AluSc SINE Alu -16 293 1 3822 183 23 33 chr21 8640235 8642858 -26264712 - L1MA8 LINE L1 -192 6099 3352 813 219 79 46 chr21 8643219 8643548 -26264022 + MER69 DNA AcHobo 2187 2526 0 285 273 162 7 chr21 8643650 8643804 -26263766 - MIR SINE MIR -27 235 58 1364 199 38 55 chr21 8644432 8644604 -26262966 + MLT1B LTR MaLR 1 175 -215 1994 137 3 3 chr21 8644604 8644904 -26262666 + AluJb SINE Alu 3 302 -10 1364 199 38 55 chr21 8644904 8645128 -26262442 + MLT1B LTR MaLR 175 390 0 1488 218 42 8 chr21 8645335 8645688 -26261882 - MLT1A1 LTR MaLR 0 365 1 256 357 54 0 chr21 8645792 8645904 -26261666 + L2 LINE L2 3196 3313 0 262 227 10 10 chr21 8647352 8647449 -26260121 + (TA)n Simple_repeat Simple_repeat 1 97 0 22 0 0 0 chr21 8648436 8648458 -26259112 + AT_rich Low_complexity Low_complexity 1 22 0 1945 172 26 28 chr21 8649080 8649099 -26258471 - MLT1B LTR MaLR -2 388 370 1984 177 16 63 chr21 8649099 8649546 -26258024 - MSTC LTR MaLR 0 428 3 1945 172 26 28 chr21 8649546 8649915 -26257655 - MLT1B LTR MaLR -20 370 1 32 57 0 0 chr21 8650374 8650427 -26257143 + AT_rich Low_complexity Low_complexity 1 53 0 1696 136 0 0 chr21 8652016 8652258 -26255312 + AluSg SINE Alu 49 290 -20 313 296 57 86 chr21 8652271 8652585 -26254985 + L1MEc LINE L1 106 410 -5986 1352 319 53 39 chr21 8652585 8653388 -26254182 + L1MEc LINE L1 887 1701 -4695 940 246 51 49 chr21 8653411 8653879 -26253691 + L1MEc LINE L1 1762 2230 -4166 664 192 17 27 chr21 8653905 8654092 -26253478 + MER33 DNA MER1_type 1 172 -108 679 258 26 18 chr21 8654218 8654447 -26253123 + L1M4 LINE L1 4434 4664 -1482 220 169 17 17 chr21 8654570 8654629 -26252941 + (TA)n Simple_repeat Simple_repeat 2 60 0 435 38 0 0 chr21 8655273 8655326 -26252244 + (CA)n Simple_repeat Simple_repeat 2 54 0 205 366 14 0 chr21 8655911 8655982 -26251588 + L2 LINE L2 3177 3248 -24 21 36 0 0 chr21 8656145 8656173 -26251397 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr21 8657149 8657183 -26250387 + AT_rich Low_complexity Low_complexity 1 34 0 254 179 0 30 chr21 8658158 8658225 -26249345 + (TATATG)n Simple_repeat Simple_repeat 2 66 0 307 306 0 0 chr21 8658336 8658421 -26249149 - L1MC4 LINE L1 -1342 6700 6616 31 0 0 0 chr21 8658495 8658526 -26249044 + AT_rich Low_complexity Low_complexity 1 31 0 30 27 0 0 chr21 8658688 8658725 -26248845 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr21 8658949 8658971 -26248599 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr21 8659066 8659089 -26248481 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr21 8659213 8659259 -26248311 + AT_rich Low_complexity Low_complexity 1 46 0 371 335 60 83 chr21 8660767 8661164 -26246406 - L2 LINE L2 -62 3210 2823 21 0 0 0 chr21 8661623 8661644 -26245926 + AT_rich Low_complexity Low_complexity 1 21 0 1939 116 61 7 chr21 8662368 8662661 -26244909 + AluSx SINE Alu 2 310 -2 4796 98 19 23 chr21 8662979 8663760 -26243810 - L1PA10 LINE L1 0 6168 5436 3569 143 31 2 chr21 8663760 8664203 -26243367 + L1P LINE L1 4725 5193 -975 261 0 0 0 chr21 8664203 8664232 -26243338 + (CA)n Simple_repeat Simple_repeat 2 30 0 3569 143 31 2 chr21 8664232 8664473 -26243097 + L1P LINE L1 5193 5426 -742 1386 276 28 42 chr21 8665793 8666391 -26241179 + MER92B LTR ERV1 1 590 -46 21 57 0 0 chr21 8666690 8666725 -26240845 + AT_rich Low_complexity Low_complexity 1 35 0 204 212 0 45 chr21 8667185 8667251 -26240319 + T-rich Low_complexity Low_complexity 1 63 0 1555 188 36 21 chr21 8668993 8669377 -26238193 + L1MB8 LINE L1 5789 6178 0 1445 208 0 30 chr21 8669400 8669698 -26237872 + AluJo SINE Alu 1 289 -23 224 211 0 0 chr21 8670211 8670263 -26237307 + (CA)n Simple_repeat Simple_repeat 2 53 0 2221 95 10 0 chr21 8670263 8670557 -26237013 - AluSp SINE Alu -16 297 1 180 0 0 0 chr21 8670563 8670583 -26236987 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 2255 113 0 0 chr21 8671466 8671775 -26235795 + AluSg SINE Alu 1 309 -1 1271 251 84 44 chr21 8672327 8673026 -26234544 - MER21B LTR ERV1 -79 784 21 2077 100 0 4 chr21 8673027 8673307 -26234263 - AluSg SINE Alu -9 301 23 874 280 49 36 chr21 8673445 8673749 -26233821 + MER92A LTR ERV1 3 310 -102 25 51 0 0 chr21 8674133 8674172 -26233398 + AT_rich Low_complexity Low_complexity 1 39 0 358 208 9 38 chr21 8675070 8675176 -26232394 + 7SK RNA RNA 1 103 -90 242 198 111 49 chr21 8676267 8676348 -26231222 + L3 LINE CR1 1484 1569 -8 373 362 67 22 chr21 8676713 8677025 -26230545 + L2 LINE L2 2560 2885 -429 21 71 0 0 chr21 8677827 8677869 -26229701 + AT_rich Low_complexity Low_complexity 1 42 0 1422 210 10 32 chr21 8677903 8678212 -26229358 + AluJb SINE Alu 1 302 -10 6821 139 20 18 chr21 8678249 8680023 -26227547 + L1MA1 LINE L1 4522 6302 0 239 351 61 0 chr21 8680299 8680413 -26227157 + L2 LINE L2 3193 3313 0 818 234 11 16 chr21 8683374 8683558 -26224012 + MER2 DNA MER2_type 1 183 -161 8377 146 44 19 chr21 8683556 8684972 -26222598 - Tigger2 DNA MER2_type -6 2712 1262 5267 168 10 44 chr21 8684953 8685043 -26222527 - Tigger2 DNA MER2_type -1730 988 896 1936 125 4 0 chr21 8685043 8685324 -26222246 - AluY SINE Alu -29 282 1 5267 168 10 44 chr21 8685324 8685782 -26221788 - Tigger2 DNA MER2_type -1822 896 489 2288 100 0 0 chr21 8685782 8686082 -26221488 - AluSc SINE Alu -9 300 1 5267 168 10 44 chr21 8686082 8686555 -26221015 - Tigger2 DNA MER2_type -2229 489 1 2230 88 0 17 chr21 8686790 8687084 -26220486 + AluSc SINE Alu 1 289 -20 32 0 0 0 chr21 8687281 8687313 -26220257 + AT_rich Low_complexity Low_complexity 1 32 0 203 255 20 0 chr21 8687373 8687424 -26220146 - L2 LINE L2 -15 3257 3206 549 364 46 4 chr21 8687790 8688029 -26219541 + MIR SINE MIR 11 259 -3 991 160 0 78 chr21 8689194 8689304 -26218266 + MLT1E2 LTR MaLR 1 89 -301 1922 157 7 0 chr21 8689304 8689604 -26217966 + AluSq SINE Alu 1 302 -11 991 160 0 78 chr21 8689604 8689699 -26217871 + MLT1E2 LTR MaLR 89 190 -200 1111 168 62 0 chr21 8689892 8690101 -26217469 - Tigger1 DNA MER2_type -5 2413 2192 928 164 0 7 chr21 8690098 8690250 -26217320 - Tigger1 DNA MER2_type -2267 151 1 204 119 71 0 chr21 8690305 8690347 -26217223 + GA-rich Low_complexity Low_complexity 3 47 0 1401 277 75 16 chr21 8690347 8690733 -26216837 + MLT1E2 LTR MaLR 215 623 -3 207 0 0 0 chr21 8692468 8692491 -26215079 + (TG)n Simple_repeat Simple_repeat 2 24 0 40 49 0 0 chr21 8692846 8692907 -26214663 + AT_rich Low_complexity Low_complexity 1 61 0 2576 43 0 0 chr21 8692975 8693280 -26214290 + AluY SINE Alu 1 305 -6 1481 234 27 40 chr21 8694829 8695230 -26212340 + MSTD LTR MaLR 1 396 0 372 311 16 0 chr21 8695293 8695415 -26212155 - L1ME1 LINE L1 -9 6157 6034 412 279 31 12 chr21 8695432 8695593 -26211977 - L1ME1 LINE L1 -279 5899 5736 343 36 0 36 chr21 8695645 8695700 -26211870 + (TA)n Simple_repeat Simple_repeat 1 53 0 329 62 21 0 chr21 8695708 8695756 -26211814 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 1523 174 16 0 chr21 8695800 8696053 -26211517 - Tigger3(Golem) DNA MER2_type -2 3027 2771 7464 238 44 18 chr21 8696111 8699271 -26208299 - L1MC1 LINE L1 -76 6537 3276 1624 198 3 0 chr21 8699271 8699599 -26207971 + AluJb SINE Alu 1 329 0 7464 238 44 18 chr21 8699599 8699938 -26207632 - L1MC1 LINE L1 -3337 3276 2947 1406 185 0 4 chr21 8699959 8700197 -26207373 - AluJb SINE Alu -75 237 1 1077 282 8 3 chr21 8700271 8700640 -26206930 - L1MC1 LINE L1 -3548 2878 2508 4939 159 63 6 chr21 8700634 8701787 -26205783 + L1PA15 LINE L1 4954 6164 -1 2326 203 39 34 chr21 8701797 8702492 -26205078 - L1MC1 LINE L1 -3948 2478 1828 2499 165 14 27 chr21 8702492 8703008 -26204562 - L1MA9 LINE L1 0 6312 5804 824 153 45 0 chr21 8703009 8703166 -26204404 - L1MA9 LINE L1 -804 5508 5345 536 241 0 15 chr21 8703167 8703304 -26204266 + L1M4 LINE L1 4863 4997 -1149 4688 192 48 44 chr21 8703422 8704588 -26202982 - L1MC1 LINE L1 -4532 1894 578 1631 231 27 12 chr21 8704601 8705114 -26202456 - L1MC1 LINE L1 -5816 610 33 21 36 0 0 chr21 8705266 8705294 -26202276 + AT_rich Low_complexity Low_complexity 1 28 0 250 157 45 11 chr21 8705329 8705418 -26202152 + (TA)n Simple_repeat Simple_repeat 1 92 0 25 65 0 0 chr21 8705482 8705528 -26202042 + AT_rich Low_complexity Low_complexity 1 46 0 211 262 0 0 chr21 8705624 8705666 -26201904 + (CA)n Simple_repeat Simple_repeat 2 43 0 359 351 35 12 chr21 8705829 8706000 -26201570 + MIR SINE MIR 88 262 0 4324 90 42 14 chr21 8707261 8707903 -26199667 + LTR30 LTR ERV1 63 722 0 391 238 0 0 chr21 8709350 8709434 -26198136 - AluSq SINE Alu -99 204 121 6762 66 6 9 chr21 8709474 8710979 -26196591 - L1PA7 LINE L1 -27 6127 4629 30 27 0 0 chr21 8711417 8711454 -26196116 + AT_rich Low_complexity Low_complexity 1 37 0 5265 100 1 3 chr21 8711498 8712245 -26195325 - L1PA8 LINE L1 -4 6168 5423 25 0 0 0 chr21 8712851 8712876 -26194694 + AT_rich Low_complexity Low_complexity 1 25 0 258 179 0 0 chr21 8713462 8713518 -26194052 + GA-rich Low_complexity Low_complexity 1 56 0 289 79 0 0 chr21 8713710 8713748 -26193822 + MADE1 DNA Mariner 1 38 -42 188 237 0 0 chr21 8714013 8714051 -26193519 + MIR SINE MIR 25 62 -200 306 278 8 40 chr21 8714114 8714240 -26193330 - MER104 DNA MER2_type -1773 122 1 22 70 0 0 chr21 8714435 8714478 -26193092 + AT_rich Low_complexity Low_complexity 1 43 0 4795 174 84 15 chr21 8715209 8716163 -26191407 - LTR28 LTR ERV1 0 1020 1 22 56 0 0 chr21 8717051 8717087 -26190483 + AT_rich Low_complexity Low_complexity 1 36 0 24 53 0 0 chr21 8719008 8719046 -26188524 + AT_rich Low_complexity Low_complexity 1 38 0 23 78 0 0 chr21 8720122 8720173 -26187397 + AT_rich Low_complexity Low_complexity 1 51 0 425 257 52 22 chr21 8721256 8721392 -26186178 - L2 LINE L2 -1 3312 3173 187 344 93 11 chr21 8721561 8721744 -26185826 - L2 LINE L2 -340 2974 2777 2306 112 56 13 chr21 8721744 8722138 -26185432 - LTR12 LTR ERV1 -237 1523 77 2070 110 0 0 chr21 8724215 8724496 -26183074 - AluSc SINE Alu -28 281 1 1955 164 38 35 chr21 8725613 8726040 -26181530 - LTR23 LTR ERV1 0 437 10 25 0 0 0 chr21 8726154 8726179 -26181391 + AT_rich Low_complexity Low_complexity 1 25 0 862 157 0 0 chr21 8726466 8726606 -26180964 - FRAM SINE Alu -7 169 30 201 147 0 0 chr21 8726723 8726757 -26180813 + (TATG)n Simple_repeat Simple_repeat 3 36 0 4899 133 11 44 chr21 8726820 8727722 -26179848 + MER4D LTR ERV1 1 872 0 1611 236 119 33 chr21 8728119 8728391 -26179179 - MLT1F1 LTR MaLR 0 567 320 1910 159 36 36 chr21 8728391 8728755 -26178815 - THE1B LTR MaLR 0 364 1 1611 236 119 33 chr21 8728755 8729004 -26178566 - MLT1F1 LTR MaLR -247 320 1 709 279 146 7 chr21 8731144 8731424 -26176146 + MLT1C LTR MaLR 146 464 -3 23 54 0 0 chr21 8732885 8732922 -26174648 + AT_rich Low_complexity Low_complexity 1 37 0 211 111 0 28 chr21 8733731 8733767 -26173803 + (CA)n Simple_repeat Simple_repeat 2 36 0 21 0 0 0 chr21 8734314 8734335 -26173235 + AT_rich Low_complexity Low_complexity 1 21 0 192 40 0 0 chr21 8735429 8735454 -26172116 + (TC)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr21 8735486 8735507 -26172063 + AT_rich Low_complexity Low_complexity 1 21 0 285 330 11 0 chr21 8735583 8735671 -26171899 + CT-rich Low_complexity Low_complexity 1 89 0 2035 120 7 13 chr21 8736287 8736586 -26170984 + AluSx SINE Alu 1 297 -15 962 128 0 0 chr21 8737019 8737152 -26170418 + AluSp SINE Alu 3 135 -178 282 332 113 36 chr21 8737173 8737447 -26170123 + L2 LINE L2 1743 2037 -1277 320 338 31 12 chr21 8737494 8737654 -26169916 + L2 LINE L2 2127 2289 -1025 283 305 65 25 chr21 8739048 8739116 -26168454 - MERVL LTR ERVL -992 4493 4286 2218 137 24 19 chr21 8739427 8739800 -26167770 - THE1C LTR MaLR 0 375 1 183 42 0 0 chr21 8739866 8739890 -26167680 + (CAAAAA)n Simple_repeat Simple_repeat 2 25 0 265 287 27 87 chr21 8740818 8740968 -26166602 - ERVL LTR ERVL -4230 1534 1394 286 176 35 71 chr21 8741072 8741157 -26166413 - ERVL LTR ERVL -4044 952 871 487 96 108 0 chr21 8741941 8742024 -26165546 - MLT1B LTR MaLR -283 107 16 2160 162 14 0 chr21 8742434 8742793 -26164777 - THE1B LTR MaLR 0 364 1 1152 281 52 97 chr21 8745499 8745753 -26161817 + L2 LINE L2 1876 2140 -1174 2072 157 54 40 chr21 8745753 8746179 -26161391 - MSTB1 LTR MaLR 0 432 1 1152 281 52 97 chr21 8746179 8746758 -26160812 + L2 LINE L2 2140 2671 -643 2521 180 19 17 chr21 8746758 8747231 -26160339 - Tigger5 DNA MER2_type -1 2322 1849 1904 114 2 119 chr21 8747261 8747663 -26159907 - THE1A LTR MaLR 0 355 1 2411 93 3 0 chr21 8747667 8747991 -26159579 - THE1A-int LTR MaLR -4 1576 1252 872 188 59 55 chr21 8748014 8748269 -26159301 + THE1C LTR MaLR 120 375 0 3146 85 6 60 chr21 8748272 8748772 -26158798 + THE1-int LTR MaLR 3 478 -1102 428 212 13 4 chr21 8749178 8749423 -26158147 + (TA)n Simple_repeat Simple_repeat 1 247 0 1471 177 14 22 chr21 8749424 8749701 -26157869 + AluJb SINE Alu 1 275 -37 341 90 103 0 chr21 8749718 8749873 -26157697 + (TA)n Simple_repeat Simple_repeat 2 172 0 259 105 51 38 chr21 8749881 8750051 -26157519 + (TATAA)n Simple_repeat Simple_repeat 1 172 0 23587 171 19 19 chr21 8751142 8753631 -26153939 + L1PA10 LINE L1 3 2491 -3992 2178 106 3 3 chr21 8753631 8753934 -26153636 + AluY SINE Alu 1 303 -8 23587 171 19 19 chr21 8753934 8757791 -26149779 + L1PA10 LINE L1 2491 6481 -2 22 35 0 0 chr21 8758109 8758138 -26149432 + AT_rich Low_complexity Low_complexity 1 29 0 1056 218 55 117 chr21 8758758 8759125 -26148445 + MLT1C LTR MaLR 59 396 -71 2186 118 0 0 chr21 8759125 8759422 -26148148 - AluSg1 SINE Alu -12 297 1 1056 218 55 117 chr21 8759422 8759490 -26148080 + MLT1C LTR MaLR 396 467 0 23 0 0 0 chr21 8759555 8759578 -26147992 + AT_rich Low_complexity Low_complexity 1 23 0 2119 106 27 0 chr21 8760076 8760369 -26147201 - AluSg1 SINE Alu -8 301 1 314 259 0 36 chr21 8760605 8760717 -26146853 - LTR41 LTR ERVL -12 761 654 1930 174 36 72 chr21 8761260 8761453 -26146117 + MLT2A2 LTR ERVL 1 199 -355 2488 34 41 0 chr21 8761453 8761745 -26145825 + AluY SINE Alu 1 304 -7 1930 174 36 72 chr21 8761745 8762131 -26145439 + MLT2A2 LTR ERVL 199 554 0 277 174 0 0 chr21 8762156 8762202 -26145368 - LTR41 LTR ERVL -622 151 106 21 0 0 0 chr21 8763136 8763157 -26144413 + AT_rich Low_complexity Low_complexity 1 21 0 330 339 16 0 chr21 8763328 8763449 -26144121 + MIR SINE MIR 18 140 -122 366 23 0 0 chr21 8764170 8764213 -26143357 + (TG)n Simple_repeat Simple_repeat 2 44 0 182 354 0 0 chr21 8764488 8764570 -26143000 + MIR SINE MIR 179 260 -2 1974 145 0 16 chr21 8764816 8765133 -26142437 + AluJb SINE Alu 1 312 0 198 143 0 0 chr21 8765672 8765707 -26141863 + (TG)n Simple_repeat Simple_repeat 1 35 0 1145 190 9 22 chr21 8766240 8766472 -26141098 - L1MC1 LINE L1 -2 6331 6103 213 288 0 14 chr21 8767689 8767762 -26139808 + A-rich Low_complexity Low_complexity 2 73 0 357 24 0 0 chr21 8767771 8767813 -26139757 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 174 0 29 chr21 8767909 8767978 -26139592 + (TA)n Simple_repeat Simple_repeat 2 68 0 319 322 0 0 chr21 8768266 8768409 -26139161 + L1MC4 LINE L1 6601 6703 -1339 333 0 0 0 chr21 8768409 8768446 -26139124 + (GA)n Simple_repeat Simple_repeat 2 38 0 1668 167 0 42 chr21 8769044 8769350 -26138220 + AluJb SINE Alu 4 296 -16 3315 77 13 24 chr21 8769813 8770269 -26137301 + MLT2A2 LTR ERVL 3 453 0 376 312 38 32 chr21 8770538 8770695 -26136875 - MIR SINE MIR -64 198 41 325 291 36 0 chr21 8770901 8771011 -26136559 + MIR SINE MIR 64 177 -85 428 314 85 27 chr21 8772368 8772626 -26134944 - L2 LINE L2 0 3313 3041 22 0 0 0 chr21 8772705 8772727 -26134843 + AT_rich Low_complexity Low_complexity 1 22 0 3050 196 57 39 chr21 8772828 8773315 -26134255 - L1MC2 LINE L1 -11 6333 5824 2197 113 3 3 chr21 8773315 8773615 -26133955 - AluSx SINE Alu -10 302 3 3050 196 57 39 chr21 8773615 8773931 -26133639 - L1MC2 LINE L1 -520 5824 5515 226 214 0 0 chr21 8773930 8773972 -26133598 - L1MC2 LINE L1 -2486 5556 5515 1335 178 8 12 chr21 8773971 8774261 -26133309 - L1MC2 LINE L1 -788 5556 5283 348 156 16 0 chr21 8774294 8774358 -26133212 - L1MC2 LINE L1 -878 5268 5204 5006 259 54 14 chr21 8774361 8776356 -26131214 - L1MC2 LINE L1 -1207 4939 2865 23 74 0 42 chr21 8777582 8777677 -26129893 + AT_rich Low_complexity Low_complexity 1 91 0 1584 296 55 11 chr21 8777850 8778474 -26129096 + L1MA9 LINE L1 12 698 -5257 481 186 0 59 chr21 8778480 8778598 -26128972 - L1 LINE L1 -1030 5116 5006 1117 233 47 53 chr21 8778798 8779388 -26128182 + L1MA9 LINE L1 686 1272 -4693 4402 164 33 76 chr21 8779399 8780726 -26126844 + L1MA9 LINE L1 4530 5760 -440 2109 69 0 0 chr21 8780726 8781001 -26126569 + L1PA5 LINE L1 5878 6152 -2 4402 164 33 76 chr21 8781001 8781423 -26126147 + L1MA9 LINE L1 5760 6199 -1 21 36 0 0 chr21 8782877 8782905 -26124665 + AT_rich Low_complexity Low_complexity 1 28 0 285 422 58 0 chr21 8783194 8783367 -26124203 + MER91A DNA MER1_type 2 184 -12 40 49 0 0 chr21 8783815 8783876 -26123694 + AT_rich Low_complexity Low_complexity 1 61 0 2508 184 56 26 chr21 8783967 8784020 -26123550 - L1MA7 LINE L1 -8 6283 6233 225 0 0 0 chr21 8784020 8784045 -26123525 + (TA)n Simple_repeat Simple_repeat 1 25 0 2508 184 56 26 chr21 8784045 8784567 -26123003 - L1MA7 LINE L1 -58 6233 5691 29 60 0 0 chr21 8784879 8784929 -26122641 + AT_rich Low_complexity Low_complexity 1 50 0 440 111 85 0 chr21 8786886 8787039 -26120531 + (TA)n Simple_repeat Simple_repeat 1 166 0 2056 179 46 113 chr21 8788532 8789080 -26118490 + MLT2B2 LTR ERVL 5 515 0 24 67 0 0 chr21 8789466 8789511 -26118059 + AT_rich Low_complexity Low_complexity 1 45 0 572 288 58 89 chr21 8790194 8790576 -26116994 + LTR33A LTR ERVL 1 370 -153 183 100 0 0 chr21 8790865 8790895 -26116675 + (TTTTTG)n Simple_repeat Simple_repeat 4 33 0 193 346 39 0 chr21 8792828 8792906 -26114664 + L2 LINE L2 3230 3310 -3 2582 242 40 2 chr21 8793394 8794014 -26113556 - MER82 DNA MER2_type 0 653 10 2201 81 56 0 chr21 8794018 8794302 -26113268 + AluY SINE Alu 1 300 -11 1304 224 61 20 chr21 8794479 8794774 -26112796 + AluJo SINE Alu 1 307 -5 13197 160 34 6 chr21 8795007 8797336 -26110234 + Tigger1 DNA MER2_type 24 2417 -1 29 60 0 0 chr21 8797580 8797630 -26109940 + AT_rich Low_complexity Low_complexity 1 50 0 554 168 19 0 chr21 8799154 8799261 -26108309 - L1MB1 LINE L1 -271 5897 5789 291 121 86 0 chr21 8799262 8799320 -26108250 + L1MB1 LINE L1 6099 6161 -28 21 0 0 0 chr21 8800944 8800965 -26106605 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr21 8801570 8801621 -26105949 + AT_rich Low_complexity Low_complexity 1 51 0 565 273 81 20 chr21 8802904 8803102 -26104468 - LTR33 LTR ERVL -236 285 76 422 217 77 86 chr21 8803167 8803504 -26104066 + L1M4 LINE L1 4511 4844 -1302 546 278 71 39 chr21 8803560 8803996 -26103574 - Charlie2 DNA MER1_type -524 2338 1889 1127 115 19 0 chr21 8805411 8805568 -26102002 + AluSg/x SINE Alu 130 289 -21 24 0 0 0 chr21 8805802 8805826 -26101744 + AT_rich Low_complexity Low_complexity 1 24 0 823 153 0 0 chr21 8805922 8806053 -26101517 + FLAM_A SINE Alu 3 133 0 688 276 22 22 chr21 8806270 8806498 -26101072 + MIR SINE MIR 6 233 -29 783 295 4 18 chr21 8806584 8806811 -26100759 - MER58A DNA MER1_type 0 224 1 2155 89 21 3 chr21 8807774 8808056 -26099514 - AluSq SINE Alu -26 287 1 207 204 0 0 chr21 8808349 8808393 -26099177 + T-rich Low_complexity Low_complexity 1 44 0 1079 0 62 0 chr21 8808960 8809106 -26098464 + (TTTTA)n Simple_repeat Simple_repeat 5 159 0 1987 121 0 14 chr21 8809108 8809398 -26098172 - AluSx SINE Alu -26 286 1 780 216 72 14 chr21 8809820 8810028 -26097542 - L1MD2 LINE L1 -3 6356 6137 335 256 0 35 chr21 8810029 8810115 -26097455 - L1MD2 LINE L1 -198 6161 6079 2754 252 49 53 chr21 8810118 8811876 -26095694 - L1MD2 LINE L1 -696 5546 3758 2369 92 0 0 chr21 8811876 8812180 -26095390 + AluSg SINE Alu 1 304 -6 2754 252 49 53 chr21 8812180 8812756 -26094814 - L1MD2 LINE L1 -2484 3758 3181 2233 113 71 11 chr21 8813034 8813388 -26094182 - THE1C LTR MaLR 0 375 1 2392 151 11 0 chr21 8813782 8814153 -26093417 - THE1C LTR MaLR 0 375 1 2934 67 0 0 chr21 8814324 8814700 -26092870 - L1PA5 LINE L1 -1 6153 5778 1110 222 19 5 chr21 8815896 8816112 -26091458 - MLT1A1 LTR MaLR 0 365 147 1021 191 0 47 chr21 8816114 8816329 -26091241 - L1P LINE L1 -2208 3938 3734 965 138 108 15 chr21 8816328 8816531 -26091039 - L1P4 LINE L1 -691 6178 5957 2597 93 6 0 chr21 8816535 8816888 -26090682 - THE1A LTR MaLR 0 355 1 1955 89 4 4 chr21 8816888 8817157 -26090413 - THE1A-int LTR MaLR 0 1580 1312 3999 95 0 0 chr21 8817152 8817698 -26089872 - THE1A-int LTR MaLR -1034 546 1 2549 96 3 25 chr21 8817698 8818061 -26089509 - THE1A LTR MaLR 0 355 1 11770 226 32 20 chr21 8818063 8819419 -26088151 - L1P4 LINE L1 -894 5955 4617 300 27 0 0 chr21 8819419 8819456 -26088114 + (TG)n Simple_repeat Simple_repeat 1 37 0 11770 226 32 20 chr21 8819456 8819664 -26087906 - L1P4 LINE L1 -2232 4617 4413 2491 105 8 0 chr21 8819664 8820016 -26087554 - THE1A LTR MaLR 0 355 1 10655 117 25 0 chr21 8820016 8821558 -26086012 - THE1A-int LTR MaLR 0 1580 1 2228 91 109 0 chr21 8821558 8821878 -26085692 - THE1A LTR MaLR 0 355 1 11770 226 32 20 chr21 8821878 8822555 -26085015 - L1P4 LINE L1 -2436 4413 3746 1514 209 150 3 chr21 8822555 8822928 -26084642 + MSTA LTR MaLR 1 428 0 11770 226 32 20 chr21 8822928 8824038 -26083532 - L1P4 LINE L1 -3103 3746 2651 1376 240 21 3 chr21 8824038 8824325 -26083245 + AluJb SINE Alu 1 292 -10 11770 226 32 20 chr21 8824325 8825575 -26081995 - L1P4 LINE L1 -4198 2651 1268 1099 318 82 78 chr21 8825902 8826946 -26080624 - L1PA12 LINE L1 -5792 1793 10 240 59 0 0 chr21 8826959 8826993 -26080577 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 21 57 0 0 chr21 8827589 8827624 -26079946 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr21 8828160 8828197 -26079373 + AT_rich Low_complexity Low_complexity 1 37 0 1766 169 21 24 chr21 8828237 8828609 -26078961 - THE1C LTR MaLR 0 375 5 9519 139 35 12 chr21 8828614 8830158 -26077412 - THE1C-int LTR MaLR -1 1579 1 1997 140 26 34 chr21 8830158 8830536 -26077034 - THE1C LTR MaLR 0 375 1 1376 115 46 5 chr21 8831081 8831298 -26076272 + MER30 DNA MER1_type 5 230 0 23 0 0 87 chr21 8831442 8831466 -26076104 + AT_rich Low_complexity Low_complexity 1 21 -21 2254 77 3 14 chr21 8831466 8831763 -26075807 - AluSq SINE Alu -19 294 1 23 0 0 87 chr21 8831763 8831784 -26075786 + AT_rich Low_complexity Low_complexity 21 42 0 531 333 80 40 chr21 8832067 8832493 -26075077 - LTR16A1 LTR ERVL -14 443 1 2290 102 0 0 chr21 8833395 8833700 -26073870 - AluSx SINE Alu -7 305 1 25 65 0 0 chr21 8834705 8834751 -26072819 + AT_rich Low_complexity Low_complexity 1 46 0 500 325 64 13 chr21 8834918 8835152 -26072418 + Charlie8 DNA MER1_type 12 257 -2160 21 36 0 0 chr21 8835646 8835674 -26071896 + AT_rich Low_complexity Low_complexity 1 28 0 342 284 67 67 chr21 8835758 8836099 -26071471 - L1ME LINE L1 -297 5824 5484 190 325 8 114 chr21 8836244 8836367 -26071203 + MIR SINE MIR 5 114 -148 22 35 0 0 chr21 8836423 8836452 -26071118 + AT_rich Low_complexity Low_complexity 1 29 0 1080 30 0 0 chr21 8836453 8836584 -26070986 - L1PA6 LINE L1 -2 6152 6022 299 129 6 48 chr21 8836686 8836707 -26070863 - Alu SINE Alu -260 42 60 1656 117 0 0 chr21 8836707 8836938 -26070632 - AluSg/x SINE Alu -1 309 79 299 129 6 48 chr21 8836938 8836996 -26070574 - Alu SINE Alu -241 61 2 2004 185 5 16 chr21 8838689 8839056 -26068514 - MLT1A1 LTR MaLR -2 363 1 21 57 0 0 chr21 8839300 8839335 -26068235 + AT_rich Low_complexity Low_complexity 1 35 0 399 182 0 0 chr21 8839521 8839598 -26067972 + (TA)n Simple_repeat Simple_repeat 2 78 0 26 64 0 0 chr21 8839615 8839662 -26067908 + AT_rich Low_complexity Low_complexity 1 47 0 1580 273 136 4 chr21 8839882 8840417 -26067153 - MLT1E2 LTR MaLR 0 626 21 4861 177 36 12 chr21 8840468 8841433 -26066137 - L1MC2 LINE L1 -3 6341 5354 2157 44 7 11 chr21 8842898 8843168 -26064402 - AluY SINE Alu -9 302 34 661 182 157 6 chr21 8843275 8843434 -26064136 - MSTA LTR MaLR -245 183 1 24 32 0 0 chr21 8843913 8843944 -26063626 + AT_rich Low_complexity Low_complexity 1 31 0 38 68 0 0 chr21 8844483 8844556 -26063014 + AT_rich Low_complexity Low_complexity 1 73 0 27 29 0 0 chr21 8844753 8844787 -26062783 + AT_rich Low_complexity Low_complexity 1 34 0 778 266 57 54 chr21 8845453 8845787 -26061783 - L1MC4a LINE L1 -1868 5940 5606 28 48 0 0 chr21 8845828 8845870 -26061700 + AT_rich Low_complexity Low_complexity 1 42 0 260 263 33 53 chr21 8849218 8849370 -26058200 + L1P LINE L1 2913 3061 -3085 262 165 10 52 chr21 8849439 8849536 -26058034 + L1M4 LINE L1 3159 3251 -2895 329 229 25 41 chr21 8849855 8849977 -26057593 + L1M4 LINE L1 4374 4493 -1653 1704 142 59 14 chr21 8849980 8850268 -26057302 + AluSx SINE Alu 1 301 -11 563 227 103 31 chr21 8850348 8850440 -26057130 + L1MC3 LINE L1 6414 6498 -1287 1996 199 26 26 chr21 8850440 8850866 -26056704 + MSTB LTR MaLR 1 426 0 563 227 103 31 chr21 8850866 8850967 -26056603 + L1MC3 LINE L1 6498 6621 -1164 1310 248 88 29 chr21 8850990 8851446 -26056124 + MER74B LTR ERVL 66 548 -74 4363 204 39 48 chr21 8851514 8852351 -26055219 + L1MC3 LINE L1 6631 7457 -328 531 261 117 67 chr21 8852351 8852552 -26055018 + MLT1D LTR MaLR 3 192 -313 2099 138 0 0 chr21 8852552 8852864 -26054706 - AluSx SINE Alu 0 312 1 531 261 117 67 chr21 8852864 8853141 -26054429 + MLT1D LTR MaLR 192 505 0 4363 204 39 48 chr21 8853141 8853438 -26054132 + L1MC3 LINE L1 7457 7755 -30 27 29 0 0 chr21 8853728 8853762 -26053808 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr21 8853873 8853901 -26053669 + AT_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr21 8853978 8854000 -26053570 + (T)n Simple_repeat Simple_repeat 1 22 0 244 121 0 0 chr21 8854236 8854269 -26053301 + U2 snRNA snRNA 1 33 -155 1795 191 70 31 chr21 8854586 8855120 -26052450 - MLT2A2 LTR ERVL 0 554 1 883 249 26 0 chr21 8855127 8855320 -26052250 + MLT1E2 LTR MaLR 318 515 -111 3667 177 118 27 chr21 8856016 8857061 -26050509 - MER52C LTR ERV1 0 1278 1 22 0 0 0 chr21 8857323 8857345 -26050225 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr21 8858060 8858086 -26049484 + (CA)n Simple_repeat Simple_repeat 1 26 0 2307 70 0 10 chr21 8858206 8858507 -26049063 + AluY SINE Alu 1 298 -13 194 215 0 15 chr21 8859866 8859931 -26047639 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 25 31 0 0 chr21 8860502 8860534 -26047036 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr21 8860567 8860588 -26046982 + AT_rich Low_complexity Low_complexity 1 21 0 962 282 108 22 chr21 8860615 8861161 -26046409 - L1ME3 LINE L1 -82 6080 5488 669 292 49 26 chr21 8861225 8861694 -26045876 - L1ME3 LINE L1 -748 5398 4919 601 270 72 35 chr21 8861716 8862034 -26045536 - L1ME3 LINE L1 -1276 4870 4541 2396 43 0 0 chr21 8863480 8863798 -26043772 + AluY SINE Alu 1 318 0 563 106 0 0 chr21 8864423 8864508 -26043062 - L1PA8 LINE L1 -1 6171 6087 2630 40 0 0 chr21 8865973 8866276 -26041294 + AluY SINE Alu 2 304 -7 30 27 0 0 chr21 8866422 8866459 -26041111 + AT_rich Low_complexity Low_complexity 1 37 0 2244 82 13 13 chr21 8867142 8867447 -26040123 + AluY SINE Alu 1 305 -6 2034 131 152 8 chr21 8867577 8867951 -26039619 + MSTA LTR MaLR 1 428 0 187 206 0 0 chr21 8869286 8869320 -26038250 - L2 LINE L2 -12 3301 3268 333 0 0 0 chr21 8871511 8871548 -26036022 + (TG)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr21 8871771 8871793 -26035777 + AT_rich Low_complexity Low_complexity 1 22 0 319 301 122 39 chr21 8872014 8872170 -26035400 + MER5B DNA MER1_type 4 172 -6 225 0 0 0 chr21 8872709 8872734 -26034836 + (TA)n Simple_repeat Simple_repeat 2 26 0 180 77 0 0 chr21 8875130 8875156 -26032414 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 1546 77 15 58 chr21 8875160 8875419 -26032151 - L1MA1 LINE L1 -10 6292 6045 1981 128 0 20 chr21 8875508 8875812 -26031758 + AluSx SINE Alu 1 298 -14 1369 178 0 8 chr21 8877345 8877587 -26029983 - L1PA16 LINE L1 -9 6157 5918 344 177 0 16 chr21 8877588 8877650 -26029920 + L1PA16 LINE L1 6078 6138 -28 267 154 39 0 chr21 8877655 8877707 -26029863 + L1PA16 LINE L1 5918 5971 -195 983 148 13 18 chr21 8877699 8877885 -26029685 - L1PA16 LINE L1 -247 5919 5726 381 369 52 9 chr21 8877944 8878177 -26029393 - MIR SINE MIR -2 260 18 327 244 65 54 chr21 8878339 8878507 -26029063 + L1MDa LINE L1 1871 2040 -4500 24 32 0 0 chr21 8878717 8878748 -26028822 + AT_rich Low_complexity Low_complexity 1 31 0 1630 188 10 3 chr21 8879091 8879384 -26028186 + AluJo SINE Alu 8 302 -10 1730 136 3 31 chr21 8879820 8880106 -26027464 + AluJb SINE Alu 14 291 -21 484 132 13 0 chr21 8881351 8881427 -26026143 + MADE1 DNA Mariner 3 79 -1 954 262 84 80 chr21 8881429 8881794 -26025776 - MLT1H1 LTR MaLR -57 533 165 2184 82 3 0 chr21 8881794 8882121 -26025449 - AluY SINE Alu 0 328 1 954 262 84 80 chr21 8882121 8882278 -26025292 - MLT1H1 LTR MaLR -425 165 10 2169 114 0 3 chr21 8884480 8884778 -26022792 - AluSx SINE Alu -15 297 1 22 0 0 0 chr21 8884904 8884926 -26022644 + AT_rich Low_complexity Low_complexity 1 22 0 43 81 0 0 chr21 8885007 8885106 -26022464 + AT_rich Low_complexity Low_complexity 1 99 0 633 219 0 0 chr21 8885295 8885414 -26022156 - FLAM_A SINE Alu -11 122 4 2201 249 88 78 chr21 8886127 8887528 -26020042 + L1MB8 LINE L1 587 1990 -4656 1906 145 3 7 chr21 8887528 8887824 -26019746 - AluSx SINE Alu -17 295 1 2201 249 88 78 chr21 8887824 8887933 -26019637 + L1MB8 LINE L1 1990 2096 -4550 2005 248 74 41 chr21 8888089 8889098 -26018472 + L1MB8 LINE L1 3166 4208 -2436 1379 256 30 46 chr21 8889125 8889625 -26017945 + LTR55 LTR ERV 52 543 -5 1814 259 29 28 chr21 8889635 8890249 -26017321 + L1MB8 LINE L1 4217 4831 -1813 2695 224 41 61 chr21 8890235 8891296 -26016274 + L1MB8 LINE L1 5633 6674 -2 406 289 28 0 chr21 8891498 8891618 -26015952 + MIR SINE MIR 28 151 -57 24 32 0 0 chr21 8892435 8892466 -26015104 + AT_rich Low_complexity Low_complexity 1 31 0 1978 133 0 3 chr21 8893495 8893808 -26013762 + AluSx SINE Alu 1 312 0 228 186 23 0 chr21 8894062 8894105 -26013465 - L2 LINE L2 -3 3310 3267 1923 137 0 0 chr21 8895478 8895755 -26011815 + AluSx SINE Alu 21 297 -15 4126 120 5 0 chr21 8896440 8897038 -26010532 - L1PA10 LINE L1 -4 6164 5564 2231 118 0 0 chr21 8897856 8898169 -26009401 - AluSq SINE Alu 0 313 1 2186 153 109 10 chr21 8899015 8899426 -26008144 - LTR47A LTR ERVL 0 452 1 544 284 6 25 chr21 8899859 8900021 -26007549 + MIR3 SINE MIR 47 205 -3 2368 88 7 0 chr21 8901496 8901803 -26005767 + AluSq SINE Alu 3 311 -2 504 255 118 7 chr21 8902446 8902599 -26004971 - MLT1E2 LTR MaLR -374 252 83 180 77 0 0 chr21 8902652 8902678 -26004892 + (A)n Simple_repeat Simple_repeat 1 26 0 1924 122 58 92 chr21 8902728 8902908 -26004662 + LTR12 LTR ERV1 18 203 -468 2328 67 0 0 chr21 8902908 8903214 -26004356 + AluY SINE Alu 1 306 0 1924 122 58 92 chr21 8903214 8903467 -26004103 + LTR12 LTR ERV1 203 437 -234 246 181 0 96 chr21 8903782 8903876 -26003694 + L1MDa LINE L1 2541 2625 -3915 444 278 121 35 chr21 8903934 8904280 -26003290 + L1M4 LINE L1 3883 4258 -1888 339 202 71 10 chr21 8904331 8904430 -26003140 + L1M4 LINE L1 4324 4428 -1718 559 241 72 55 chr21 8904487 8904724 -26002846 + L1M4 LINE L1 4447 4687 -1459 1499 181 65 0 chr21 8904754 8905014 -26002556 - AluSg SINE Alu -33 277 1 458 256 56 31 chr21 8905016 8905176 -26002394 + L1M4 LINE L1 4682 4845 -1301 684 161 0 0 chr21 8905176 8905319 -26002251 + (TA)n Simple_repeat Simple_repeat 1 143 0 322 376 0 0 chr21 8905330 8905492 -26002078 + (TATATG)n Simple_repeat Simple_repeat 3 164 0 324 0 0 0 chr21 8905509 8905545 -26002025 + (CA)n Simple_repeat Simple_repeat 2 37 0 198 0 0 0 chr21 8905546 8905568 -26002002 + (TA)n Simple_repeat Simple_repeat 1 22 0 189 0 0 0 chr21 8905616 8905637 -26001933 + (CA)n Simple_repeat Simple_repeat 2 22 0 189 0 0 0 chr21 8905683 8905704 -26001866 + (TA)n Simple_repeat Simple_repeat 2 22 0 183 80 0 0 chr21 8905776 8905801 -26001769 + (TA)n Simple_repeat Simple_repeat 1 25 0 192 152 0 0 chr21 8905936 8905969 -26001601 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 147 0 0 chr21 8905969 8906003 -26001567 + (CA)n Simple_repeat Simple_repeat 2 35 0 484 219 0 14 chr21 8906082 8906228 -26001342 + (TA)n Simple_repeat Simple_repeat 1 144 0 319 253 0 22 chr21 8906239 8906331 -26001239 + (TATATG)n Simple_repeat Simple_repeat 1 89 0 288 0 0 0 chr21 8906383 8906415 -26001155 + (TA)n Simple_repeat Simple_repeat 1 32 0 186 133 0 0 chr21 8906492 8906522 -26001048 + (TA)n Simple_repeat Simple_repeat 1 30 0 383 208 0 52 chr21 8906652 8906748 -26000822 + L1MC4 LINE L1 6613 6703 -1339 192 200 0 0 chr21 8906748 8906788 -26000782 + (TA)n Simple_repeat Simple_repeat 2 41 0 306 0 0 0 chr21 8906788 8906822 -26000748 + (CA)n Simple_repeat Simple_repeat 2 35 0 325 196 9 28 chr21 8906909 8907016 -26000554 + (TG)n Simple_repeat Simple_repeat 2 106 0 295 248 9 29 chr21 8907032 8907137 -26000433 + (TA)n Simple_repeat Simple_repeat 2 104 0 211 172 35 0 chr21 8907187 8907245 -26000325 + (TA)n Simple_repeat Simple_repeat 2 61 0 220 54 71 18 chr21 8907498 8907554 -26000016 + (TATAA)n Simple_repeat Simple_repeat 1 59 0 271 164 41 57 chr21 8907603 8907725 -25999845 + (TATAA)n Simple_repeat Simple_repeat 2 121 0 192 158 0 0 chr21 8907915 8907953 -25999617 + GA-rich Low_complexity Low_complexity 1 38 0 1549 191 0 10 chr21 8908155 8908443 -25999127 + MER7A DNA MER2_type 64 346 0 1092 259 86 5 chr21 8908457 8908916 -25998654 - L1MEc LINE L1 -3625 3332 2888 344 278 89 97 chr21 8908962 8909332 -25998238 - L1MEc LINE L1 -4317 2821 2455 499 333 64 28 chr21 8909538 8909701 -25997869 - L1MEc LINE L1 -4645 2493 2337 183 42 0 0 chr21 8909701 8909725 -25997845 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 499 333 64 28 chr21 8909725 8910033 -25997537 - L1MEc LINE L1 -4801 2337 2005 723 263 42 16 chr21 8910056 8910368 -25997202 - L1MEc LINE L1 -5040 1815 1496 750 255 39 67 chr21 8910378 8910688 -25996882 + MLT2B3 LTR ERVL 1 342 -178 3139 142 24 30 chr21 8910695 8911229 -25996341 - MER61E LTR ERV1 -38 531 1 656 157 8 75 chr21 8911241 8911347 -25996223 + MLT2B1 LTR ERVL 362 459 -61 1254 154 121 77 chr21 8911347 8911776 -25995794 - LTR7 LTR ERV1 -2 448 1 656 157 8 75 chr21 8911776 8911803 -25995767 + MLT2B1 LTR ERVL 459 486 -34 499 287 40 76 chr21 8911860 8912163 -25995407 - L1MEc LINE L1 -5363 1496 1205 297 100 0 0 chr21 8912319 8912369 -25995201 + (TG)n Simple_repeat Simple_repeat 1 50 0 3658 30 0 0 chr21 8912838 8913272 -25994298 - L1PA4 LINE L1 -4 6151 5718 1876 192 76 46 chr21 8913335 8913725 -25993845 - MER34 LTR ERV1 0 542 132 2329 73 0 0 chr21 8913725 8914025 -25993545 - AluY SINE Alu -11 300 1 1876 192 76 46 chr21 8914025 8914135 -25993435 - MER34 LTR ERV1 -410 132 27 282 300 20 30 chr21 8914389 8914489 -25993081 - MER20B DNA MER1_type -638 146 48 269 196 0 0 chr21 8917764 8917815 -25989755 - L1MC4 LINE L1 -1344 6698 6648 503 184 29 0 chr21 8918009 8918112 -25989458 + L1MA9 LINE L1 6169 6274 -38 1969 132 3 3 chr21 8918316 8918605 -25988965 + AluSx SINE Alu 11 299 -13 21 0 0 0 chr21 8918689 8918710 -25988860 + AT_rich Low_complexity Low_complexity 1 21 0 306 169 0 0 chr21 8919010 8919075 -25988495 + (TG)n Simple_repeat Simple_repeat 2 66 0 697 180 16 0 chr21 8919092 8919220 -25988350 + FRAM SINE Alu 38 167 -9 240 314 51 29 chr21 8919993 8920130 -25987440 + L1MC/D LINE L1 5577 5716 -2092 279 157 0 0 chr21 8920396 8920447 -25987123 + (TA)n Simple_repeat Simple_repeat 1 51 0 21 0 0 0 chr21 8920973 8920994 -25986576 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr21 8921758 8921792 -25985778 + AT_rich Low_complexity Low_complexity 1 34 0 2016 101 0 4 chr21 8921869 8922222 -25985348 - AluSc SINE Alu 0 358 7 5984 169 18 8 chr21 8922540 8923608 -25983962 + Tigger1 DNA MER2_type 1 1079 -1339 17585 182 25 6 chr21 8923629 8924925 -25982645 + L1MA1 LINE L1 461 1730 -5835 198 0 0 0 chr21 8924925 8924947 -25982623 + (GA)n Simple_repeat Simple_repeat 1 22 0 17585 182 25 6 chr21 8924947 8928022 -25979548 + L1MA1 LINE L1 1730 4918 -2647 4246 129 3 1 chr21 8928017 8928765 -25978805 + L1MA1 LINE L1 6546 7295 -426 632 175 0 0 chr21 8928762 8928876 -25978694 + L1M1 LINE L1 5584 5697 -1868 453 94 16 0 chr21 8928884 8928948 -25978622 - L1MA1 LINE L1 -415 5887 5823 2696 102 10 0 chr21 8928951 8929351 -25978219 + L1MA1 LINE L1 5899 6302 0 7452 157 7 45 chr21 8929366 8930171 -25977399 + Tigger1 DNA MER2_type 1061 1895 -523 1273 214 23 45 chr21 8930171 8930479 -25977091 - AluJo SINE Alu -9 303 3 7452 157 7 45 chr21 8930479 8930879 -25976691 + Tigger1 DNA MER2_type 1895 2208 -210 2008 106 4 7 chr21 8930879 8931154 -25976416 - AluSc SINE Alu -15 294 21 7452 157 7 45 chr21 8931154 8931358 -25976212 + Tigger1 DNA MER2_type 2208 2418 0 294 217 0 0 chr21 8931628 8931697 -25975873 + (TA)n Simple_repeat Simple_repeat 1 69 0 1323 185 102 10 chr21 8931920 8932223 -25975347 + THE1C LTR MaLR 1 331 -44 3309 131 14 19 chr21 8932225 8933166 -25974404 + THE1C-int LTR MaLR 596 1580 0 1864 121 55 71 chr21 8933166 8933547 -25974023 + THE1C LTR MaLR 1 375 0 323 303 45 32 chr21 8933745 8933900 -25973670 + L1ME2 LINE L1 5486 5642 -691 22 35 0 0 chr21 8934219 8934248 -25973322 + AT_rich Low_complexity Low_complexity 1 29 0 27 87 0 0 chr21 8934398 8934467 -25973103 + AT_rich Low_complexity Low_complexity 1 69 0 30 27 0 0 chr21 8934508 8934545 -25973025 + AT_rich Low_complexity Low_complexity 1 37 0 265 188 25 0 chr21 8935089 8935169 -25972401 + (TA)n Simple_repeat Simple_repeat 2 83 0 3085 117 6 32 chr21 8935456 8935954 -25971616 + LTR22B LTR ERVK 5 489 -3 983 320 31 23 chr21 8937192 8937582 -25969988 + LTR40a LTR ERVL 3 395 -124 335 309 21 10 chr21 8937685 8937782 -25969788 - L2 LINE L2 -29 3284 3187 40 49 0 0 chr21 8937804 8937865 -25969705 + AT_rich Low_complexity Low_complexity 1 61 0 333 376 41 25 chr21 8938321 8938688 -25968882 - L2 LINE L2 -963 2351 1979 29 78 0 0 chr21 8938795 8938859 -25968711 + AT_rich Low_complexity Low_complexity 1 64 0 8485 178 37 6 chr21 8941151 8942753 -25964817 - MSTA-int LTR MaLR 0 1651 1 2366 141 69 12 chr21 8942753 8943158 -25964412 - MSTA LTR MaLR 0 428 1 2052 122 127 16 chr21 8943237 8943622 -25963948 - MSTA LTR MaLR 0 428 1 208 176 59 0 chr21 8943966 8944017 -25963553 + T-rich Low_complexity Low_complexity 3 56 0 378 94 0 0 chr21 8945681 8945734 -25961836 + U2 snRNA snRNA 1 53 -135 1489 210 7 0 chr21 8945962 8946257 -25961313 + AluJb SINE Alu 1 297 -15 326 23 0 0 chr21 8946786 8946830 -25960740 + L1PA2 LINE L1 6110 6153 -2 308 266 93 103 chr21 8947003 8947304 -25960266 + L1ME2 LINE L1 5789 6086 -78 593 175 39 0 chr21 8947320 8947423 -25960147 - FLAM_A SINE Alu -35 107 1 195 100 0 0 chr21 8947458 8947488 -25960082 + (CA)n Simple_repeat Simple_repeat 2 31 0 3093 178 41 64 chr21 8948989 8949696 -25957874 - LTR8 LTR ERV1 0 691 1 2239 107 3 3 chr21 8950777 8951086 -25956484 - AluSc SINE Alu 0 309 1 230 271 0 0 chr21 8951447 8951506 -25956064 + (TA)n Simple_repeat Simple_repeat 1 59 0 1106 228 20 64 chr21 8952934 8953325 -25954245 + MLT1A2 LTR MaLR 1 374 0 24 0 0 0 chr21 8953706 8953730 -25953840 + AT_rich Low_complexity Low_complexity 1 24 0 231 157 0 0 chr21 8953890 8953941 -25953629 + (TA)n Simple_repeat Simple_repeat 1 51 0 308 224 31 0 chr21 8953997 8954095 -25953475 + (TA)n Simple_repeat Simple_repeat 2 102 0 342 312 125 10 chr21 8954155 8954347 -25953223 + L1MD3 LINE L1 5734 5947 -2048 2548 137 83 5 chr21 8954460 8954904 -25952666 - MER31A LTR ERV1 -6 479 1 42 0 0 0 chr21 8954978 8955020 -25952550 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr21 8955042 8955064 -25952506 + AT_rich Low_complexity Low_complexity 1 22 0 1995 115 11 0 chr21 8955231 8955517 -25952053 + AluSq SINE Alu 1 289 -24 189 0 0 0 chr21 8955527 8955548 -25952022 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 197 136 74 12 chr21 8955593 8955674 -25951896 + (TA)n Simple_repeat Simple_repeat 1 86 0 1645 218 6 3 chr21 8956028 8956359 -25951211 - MLT1A1 LTR MaLR 0 365 34 771 228 0 5 chr21 8956614 8956798 -25950772 - L1M4 LINE L1 -3275 2871 2689 2712 167 8 41 chr21 8958009 8958597 -25948973 + L1MB3 LINE L1 5606 6174 -9 2454 39 3 29 chr21 8959153 8959465 -25948105 + AluY SINE Alu 1 304 -7 1281 192 0 25 chr21 8960458 8960703 -25946867 + AluJo SINE Alu 12 250 -62 2109 54 11 4 chr21 8960829 8961107 -25946463 + L1PA7 LINE L1 5874 6153 -1 228 309 32 56 chr21 8962200 8962326 -25945244 + MIR SINE MIR 20 142 -66 22 0 0 0 chr21 8962966 8962988 -25944582 + AT_rich Low_complexity Low_complexity 1 22 0 7342 201 57 29 chr21 8963663 8965280 -25942290 + MER52A LTR ERV1 217 1755 0 187 206 191 0 chr21 8965436 8965499 -25942071 + MIR SINE MIR 120 194 -68 851 200 40 15 chr21 8965744 8966019 -25941551 + Tigger1 DNA MER2_type 2 304 -2114 10289 163 33 8 chr21 8966019 8967870 -25939700 + Tigger1 DNA MER2_type 521 2418 0 4261 183 13 24 chr21 8967870 8968719 -25938851 + L1MC1 LINE L1 5443 6282 -51 1891 56 0 0 chr21 8969227 8969459 -25938111 - AluSc SINE Alu 0 309 78 473 145 0 0 chr21 8969459 8969535 -25938035 + AluS SINE Alu 2 77 -232 186 404 0 20 chr21 8969537 8969636 -25937934 + L3 LINE CR1 1455 1551 -26 946 167 49 20 chr21 8969922 8970126 -25937444 - L1MA4 LINE L1 -7 6293 6084 250 111 0 0 chr21 8970791 8970827 -25936743 - MIR SINE MIR -109 153 118 534 283 65 35 chr21 8972977 8973466 -25934104 - MLT1G1 LTR MaLR -2 593 23 30 27 0 0 chr21 8973683 8973720 -25933850 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr21 8973795 8973832 -25933738 + AT_rich Low_complexity Low_complexity 1 37 0 32 43 0 0 chr21 8973915 8973961 -25933609 + AT_rich Low_complexity Low_complexity 1 46 0 2052 120 17 3 chr21 8974600 8974900 -25932670 - AluSc SINE Alu -5 304 1 252 116 0 87 chr21 8975389 8975458 -25932112 + (TAAAA)n Simple_repeat Simple_repeat 5 67 0 22 0 0 0 chr21 8975464 8975486 -25932084 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr21 8975570 8975598 -25931972 + AT_rich Low_complexity Low_complexity 1 28 0 889 229 59 81 chr21 8975658 8976029 -25931541 - MLT1A1 LTR MaLR -2 363 1 222 189 0 0 chr21 8976035 8976072 -25931498 + (TG)n Simple_repeat Simple_repeat 2 38 0 401 284 6 0 chr21 8976082 8976251 -25931319 + (TA)n Simple_repeat Simple_repeat 1 170 0 1814 131 36 0 chr21 8976300 8976605 -25930965 + AluSq SINE Alu 1 315 0 21 95 0 0 chr21 8979210 8979273 -25928297 + AT_rich Low_complexity Low_complexity 1 63 0 342 272 48 19 chr21 8979946 8980049 -25927521 - MER110 LTR ERV1 0 491 386 799 172 31 0 chr21 8980212 8980375 -25927195 - MER110A LTR ERV1 -300 168 1 22 35 0 0 chr21 8980559 8980588 -25926982 + AT_rich Low_complexity Low_complexity 1 29 0 1300 140 31 19 chr21 8981065 8981350 -25926220 + MER61C LTR ERV1 1 378 -56 259 128 0 21 chr21 8981585 8981632 -25925938 + MER61B LTR ERV1 380 425 0 1897 192 87 60 chr21 8982532 8983151 -25924419 - MER92B LTR ERV1 0 636 1 320 282 16 40 chr21 8983647 8983771 -25923799 + MIR SINE MIR 46 166 -96 2916 190 14 17 chr21 8983825 8984414 -25923156 + L1MA6 LINE L1 3907 4493 -1653 4602 170 14 23 chr21 8984411 8985290 -25922280 + L1MA6 LINE L1 5385 6257 -43 2085 118 0 17 chr21 8985290 8985587 -25921983 - AluSx SINE Alu -16 296 5 4602 170 14 23 chr21 8985587 8985623 -25921947 + L1MA6 LINE L1 6257 6292 -8 242 208 0 0 chr21 8987130 8987183 -25920387 - L1PB4 LINE L1 -2 6154 6102 279 354 49 21 chr21 8987326 8987470 -25920100 - MIR SINE MIR -112 150 3 663 270 80 31 chr21 8987471 8987760 -25919810 - MER102b DNA MER1_type 0 341 39 1962 107 48 0 chr21 8988487 8988776 -25918794 + AluSc SINE Alu 7 309 0 207 298 36 6 chr21 8989349 8989449 -25918121 + MIR SINE MIR 21 123 -85 27 49 0 0 chr21 8990058 8990099 -25917471 + AT_rich Low_complexity Low_complexity 1 41 0 1977 174 63 27 chr21 8990508 8990921 -25916649 + MSTA LTR MaLR 1 428 0 7425 187 50 27 chr21 8990921 8992536 -25915034 + MSTA-int LTR MaLR 1 1651 0 2123 191 62 2 chr21 8992536 8992940 -25914630 + MSTA LTR MaLR 1 428 0 459 227 8 17 chr21 8992987 8993106 -25914464 - MER58B DNA MER1_type -8 333 216 326 176 0 0 chr21 8993101 8993152 -25914418 - MER58B DNA MER1_type -288 53 3 706 293 77 5 chr21 8993229 8993451 -25914119 - MIR SINE MIR -7 255 18 24 0 0 0 chr21 8993629 8993653 -25913917 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr21 8994153 8994185 -25913385 + AT_rich Low_complexity Low_complexity 1 32 0 344 291 109 11 chr21 8995855 8996030 -25911540 - MIR SINE MIR -1 261 70 492 29 0 0 chr21 8998031 8998101 -25909469 - AluY SINE Alu 0 310 241 1325 211 33 21 chr21 8998504 8998841 -25908729 + L1MA9 LINE L1 5970 6310 -2 322 328 26 37 chr21 8999309 8999580 -25907990 + L1P LINE L1 3899 4166 -1980 321 68 0 0 chr21 9000006 9000050 -25907520 + (TG)n Simple_repeat Simple_repeat 2 45 0 2231 82 34 3 chr21 9000070 9000361 -25907209 - AluSq SINE Alu -11 302 3 717 290 45 100 chr21 9000902 9001536 -25906034 + L1ME3A LINE L1 5260 5849 -321 1066 199 43 115 chr21 9001536 9001928 -25905642 + MLT1A1 LTR MaLR 1 364 -1 717 290 45 100 chr21 9001928 9002034 -25905536 + L1ME3A LINE L1 5849 5959 -211 1777 177 47 56 chr21 9002189 9002246 -25905324 + MSTB LTR MaLR 1 57 -369 2405 77 0 3 chr21 9002246 9002556 -25905014 + AluY SINE Alu 1 309 -2 1777 177 47 56 chr21 9002556 9002928 -25904642 + MSTB LTR MaLR 57 426 0 30 59 0 0 chr21 9003038 9003089 -25904481 + AT_rich Low_complexity Low_complexity 1 51 0 3263 162 23 16 chr21 9003947 9004455 -25903115 + L1MC2 LINE L1 5323 5826 -518 2050 152 0 7 chr21 9004455 9004764 -25902806 + AluSx SINE Alu 1 307 -5 3263 162 23 16 chr21 9004764 9004942 -25902628 + L1MC2 LINE L1 5826 6079 -265 468 0 0 0 chr21 9004942 9004994 -25902576 + (TA)n Simple_repeat Simple_repeat 2 53 0 3263 162 23 16 chr21 9004994 9005084 -25902486 + L1MC2 LINE L1 6079 6167 -177 498 208 75 81 chr21 9005085 9005258 -25902312 + MLT1B LTR MaLR 1 172 -218 413 133 26 9 chr21 9005290 9005403 -25902167 + (CA)n Simple_repeat Simple_repeat 2 116 0 309 125 0 0 chr21 9005425 9005481 -25902089 + (TC)n Simple_repeat Simple_repeat 1 56 0 589 217 43 31 chr21 9005495 9005656 -25901914 + MLT1B LTR MaLR 201 363 -27 605 239 55 0 chr21 9005667 9005830 -25901740 + L1MC2 LINE L1 6165 6336 -8 198 71 0 0 chr21 9006270 9006298 -25901272 + (TG)n Simple_repeat Simple_repeat 1 28 0 185 0 40 0 chr21 9006297 9006322 -25901248 + (GA)n Simple_repeat Simple_repeat 1 26 0 1619 191 4 4 chr21 9007417 9007695 -25899875 + AluJb SINE Alu 2 279 -33 293 366 91 29 chr21 9007961 9008136 -25899434 - MIR SINE MIR -31 231 46 261 269 27 54 chr21 9008608 9008750 -25898820 - L2 LINE L2 -20 3293 3154 1865 149 58 25 chr21 9008750 9009113 -25898457 - THE1C LTR MaLR 0 375 1 1977 207 14 29 chr21 9009424 9009844 -25897726 + MLT2D LTR ERVL 1 414 0 1439 173 63 66 chr21 9010075 9010440 -25897130 + THE1B LTR MaLR 1 364 0 1623 214 56 0 chr21 9010827 9011278 -25896292 + L1MCa LINE L1 18 538 -5888 492 331 60 44 chr21 9011655 9012039 -25895531 + L1MCc LINE L1 786 1175 -5248 21 36 0 0 chr21 9012039 9012067 -25895503 + AT_rich Low_complexity Low_complexity 1 28 0 837 265 43 20 chr21 9012167 9012572 -25894998 + L1MCc LINE L1 1211 1625 -4887 2567 65 0 0 chr21 9012572 9012881 -25894689 + AluY SINE Alu 1 309 -2 261 0 0 0 chr21 9012913 9012942 -25894628 + (TG)n Simple_repeat Simple_repeat 2 30 0 1491 205 16 19 chr21 9013232 9013539 -25894031 + AluJo SINE Alu 1 306 -6 25 0 0 0 chr21 9013597 9013622 -25893948 + AT_rich Low_complexity Low_complexity 1 25 0 1059 233 15 38 chr21 9013694 9013960 -25893610 + L1ME1 LINE L1 8 267 -6275 3318 198 35 21 chr21 9014199 9015051 -25892519 + L1ME1 LINE L1 768 1631 -4911 4101 226 89 53 chr21 9015050 9015483 -25892087 + L1ME1 LINE L1 4246 4662 -2002 282 56 0 0 chr21 9015483 9015519 -25892051 + (CA)n Simple_repeat Simple_repeat 2 37 0 4101 226 89 53 chr21 9015519 9016217 -25891353 + L1ME1 LINE L1 4662 5333 -1331 1830 168 45 25 chr21 9016217 9016574 -25890996 + THE1B LTR MaLR 1 364 0 10012 108 31 43 chr21 9016575 9018172 -25889398 + THE1C-int LTR MaLR 2 1580 0 2022 160 53 3 chr21 9018172 9018529 -25889041 + THE1C LTR MaLR 1 375 0 4101 226 89 53 chr21 9018529 9019166 -25888404 + L1ME1 LINE L1 5333 5946 -718 189 0 0 0 chr21 9019166 9019187 -25888383 + (TA)n Simple_repeat Simple_repeat 2 22 0 4101 226 89 53 chr21 9019187 9019751 -25887819 + L1ME1 LINE L1 5946 6659 -5 225 0 0 0 chr21 9019787 9019812 -25887758 + (CCA)n Simple_repeat Simple_repeat 2 26 0 1264 213 58 101 chr21 9020092 9020358 -25887212 + MER50 LTR ERV1 240 475 -259 2341 52 3 39 chr21 9020358 9020665 -25886905 - AluY SINE Alu -15 296 1 1264 213 58 101 chr21 9020665 9020915 -25886655 + MER50 LTR ERV1 475 734 0 276 355 12 47 chr21 9020981 9021153 -25886417 + L2 LINE L2 2243 2408 -906 229 224 20 0 chr21 9021243 9021292 -25886278 + L2 LINE L2 3264 3313 0 968 211 68 0 chr21 9022428 9022679 -25884891 - L1MA4 LINE L1 -6 6294 6027 684 192 0 8 chr21 9023030 9023150 -25884420 + FLAM_C SINE Alu 12 130 -13 27 0 0 0 chr21 9023664 9023691 -25883879 + AT_rich Low_complexity Low_complexity 1 27 0 2146 119 3 0 chr21 9023767 9024060 -25883510 + AluSp SINE Alu 1 294 -19 359 127 0 0 chr21 9024618 9024673 -25882897 - MADE1 DNA Mariner 0 80 26 2037 217 57 6 chr21 9025002 9025153 -25882417 + L1MB1 LINE L1 5677 5819 -370 1853 128 0 15 chr21 9025153 9025427 -25882143 + AluSx SINE Alu 38 307 -5 2037 217 57 6 chr21 9025427 9025745 -25881825 + L1MB1 LINE L1 5819 6170 -19 2430 46 0 33 chr21 9027668 9027972 -25879598 - AluY SINE Alu -6 305 12 251 175 16 32 chr21 9028379 9028442 -25879128 + L1ME4a LINE L1 5982 6043 -78 25 83 0 0 chr21 9028454 9028514 -25879056 + AT_rich Low_complexity Low_complexity 1 60 0 202 352 28 0 chr21 9029004 9029075 -25878495 - MIR SINE MIR -161 101 29 2059 122 0 33 chr21 9030966 9031270 -25876300 + AluSq SINE Alu 1 294 -19 2204 183 45 2 chr21 9031396 9031861 -25875709 - MER31A LTR ERV1 0 485 1 599 155 0 46 chr21 9032537 9032711 -25874859 + (TA)n Simple_repeat Simple_repeat 2 167 0 198 0 0 0 chr21 9032761 9032783 -25874787 + (TA)n Simple_repeat Simple_repeat 2 23 0 704 206 14 21 chr21 9035485 9035626 -25871944 - MER68 LTR ERV1 -8 554 415 785 254 0 26 chr21 9035630 9035819 -25871751 + MLT1B LTR MaLR 4 187 -187 327 136 0 0 chr21 9035819 9035878 -25871692 + (TC)n Simple_repeat Simple_repeat 2 60 0 910 247 0 0 chr21 9035879 9036065 -25871505 + MLT1B LTR MaLR 205 390 0 2333 169 38 5 chr21 9036072 9036469 -25871101 - MER68 LTR ERV1 -152 410 1 2231 92 0 10 chr21 9037106 9037401 -25870169 + AluY SINE Alu 1 292 -19 201 213 0 0 chr21 9037932 9037979 -25869591 + (TA)n Simple_repeat Simple_repeat 2 48 0 192 40 0 0 chr21 9038571 9038596 -25868974 + (TA)n Simple_repeat Simple_repeat 1 25 0 225 108 0 0 chr21 9038595 9038632 -25868938 + (CA)n Simple_repeat Simple_repeat 2 38 0 1156 257 107 113 chr21 9039207 9040001 -25867569 + MER21B LTR ERV1 13 801 -62 1044 276 76 59 chr21 9040678 9042169 -25865401 - L1M4 LINE L1 -1098 5048 3336 2121 131 0 3 chr21 9042315 9042627 -25864943 - AluSq SINE Alu -2 311 1 363 269 53 53 chr21 9042630 9042801 -25864769 - L1M4 LINE L1 -3016 3130 2960 321 290 14 14 chr21 9043037 9043182 -25864388 - L1M4 LINE L1 -3351 2795 2651 1751 240 25 16 chr21 9047871 9048313 -25859257 - LTR40a LTR ERVL -3 516 71 980 262 50 0 chr21 9048367 9048626 -25858944 - HERVL40 LTR ERVL -12 5518 5247 364 307 24 12 chr21 9048584 9048750 -25858820 - MER68-int LTR ERV1 -316 6485 6318 456 286 0 0 chr21 9049600 9049705 -25857865 - HERVL40 LTR ERVL -1162 4368 4264 2035 289 50 17 chr21 9049825 9050489 -25857081 - HERVL40 LTR ERVL -1415 4115 3430 439 271 41 16 chr21 9050554 9050676 -25856894 - HERVL40 LTR ERVL -2190 3340 3216 664 207 14 0 chr21 9050677 9050817 -25856753 - LTR40a LTR ERVL -317 202 61 2229 82 11 0 chr21 9051075 9051378 -25856192 + AluY SINE Alu 1 306 0 1419 206 69 53 chr21 9051843 9052222 -25855348 - MLT1B LTR MaLR -3 387 3 2375 87 0 3 chr21 9052228 9052540 -25855030 - AluY SINE Alu 0 311 1 2062 246 46 6 chr21 9053028 9053549 -25854021 - REP3 LTR ERV -20 542 1 663 197 95 0 chr21 9055553 9055690 -25851880 - MLT1D LTR MaLR -349 156 7 1135 357 27 27 chr21 9056140 9056888 -25850682 + ERVL LTR ERVL 3686 4433 -1331 2316 90 33 41 chr21 9057138 9057505 -25850065 + THE1B LTR MaLR 1 364 0 25 0 0 0 chr21 9059031 9059056 -25848514 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr21 9059382 9059403 -25848167 + AT_rich Low_complexity Low_complexity 1 21 0 302 0 0 26 chr21 9059785 9059824 -25847746 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 435 225 83 17 chr21 9059905 9060025 -25847545 + LTR50 LTR ERVL 1 128 -667 774 256 47 38 chr21 9060031 9060348 -25847222 + L1ME2 LINE L1 5844 6163 -1 231 61 0 0 chr21 9060424 9060457 -25847113 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 2022 103 0 25 chr21 9060464 9060745 -25846825 - AluSx SINE Alu -38 274 1 316 0 45 0 chr21 9060877 9060921 -25846649 + (TA)n Simple_repeat Simple_repeat 2 47 0 319 187 22 14 chr21 9062675 9062814 -25844756 + (TA)n Simple_repeat Simple_repeat 1 140 0 197 389 22 0 chr21 9063413 9063503 -25844067 - MIR SINE MIR -66 142 51 29 60 0 0 chr21 9064933 9064983 -25842587 + AT_rich Low_complexity Low_complexity 1 50 0 2047 123 0 35 chr21 9065685 9065995 -25841575 - AluSg SINE Alu -11 299 1 530 287 44 19 chr21 9066497 9066673 -25840897 + MER58B DNA MER1_type 36 341 0 2332 104 8 8 chr21 9068538 9068895 -25838675 + L1PA13 LINE L1 5799 6155 -8 248 146 0 0 chr21 9069196 9069237 -25838333 - Alu SINE Alu -5 170 130 390 42 0 0 chr21 9069336 9069384 -25838186 + (CA)n Simple_repeat Simple_repeat 2 49 0 1245 198 31 38 chr21 9070096 9070384 -25837186 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr21 9070440 9070473 -25837097 + AT_rich Low_complexity Low_complexity 1 33 0 40 49 0 0 chr21 9071253 9071314 -25836256 + AT_rich Low_complexity Low_complexity 1 61 0 1109 43 0 0 chr21 9071658 9071796 -25835774 - L1PA5 LINE L1 0 6154 6017 811 221 66 89 chr21 9073252 9073719 -25833851 + MLT1F1 LTR MaLR 63 654 0 361 262 138 7 chr21 9074143 9074288 -25833282 - L2 LINE L2 -942 2372 2209 209 186 0 0 chr21 9076405 9076448 -25831122 + GA-rich Low_complexity Low_complexity 2 44 0 375 23 0 0 chr21 9076451 9076495 -25831075 + (CA)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr21 9076805 9076826 -25830744 + AT_rich Low_complexity Low_complexity 1 21 0 2104 112 0 7 chr21 9077001 9077296 -25830274 - AluSg SINE Alu -17 293 1 209 250 18 0 chr21 9077619 9077675 -25829895 + (TA)n Simple_repeat Simple_repeat 2 58 0 207 152 0 0 chr21 9077705 9077751 -25829819 + (CA)n Simple_repeat Simple_repeat 1 46 0 23 33 0 0 chr21 9078088 9078116 -25829454 + AT_rich Low_complexity Low_complexity 1 30 0 434 337 25 10 chr21 9079414 9079610 -25827960 + L2 LINE L2 2378 2576 -738 651 216 91 30 chr21 9079846 9080078 -25827492 + L1MCc LINE L1 1277 1522 -4901 21 36 0 0 chr21 9080413 9080441 -25827129 + AT_rich Low_complexity Low_complexity 1 28 0 919 236 4 31 chr21 9080469 9080694 -25826876 + MER20 DNA MER1_type 1 219 0 30 45 0 0 chr21 9080946 9080990 -25826580 + AT_rich Low_complexity Low_complexity 1 44 0 414 233 45 0 chr21 9081044 9081177 -25826393 + L1MCc LINE L1 2901 3039 -4083 521 258 6 0 chr21 9081179 9081357 -25826213 + L1MCc LINE L1 3037 3215 -3726 292 352 47 22 chr21 9081389 9081838 -25825732 + L1MCc LINE L1 3291 3750 -3191 1755 291 38 25 chr21 9081855 9082548 -25825022 + L1MCc LINE L1 3783 4484 -2457 659 220 82 35 chr21 9082661 9082916 -25824654 + L1MCc LINE L1 5232 5498 -1443 373 299 11 20 chr21 9082947 9083181 -25824389 + L1MCc LINE L1 5986 6219 -743 920 276 41 22 chr21 9083200 9083566 -25824004 - L1M4 LINE L1 -1072 5074 4702 420 270 11 86 chr21 9083566 9083740 -25823830 + L2 LINE L2 3148 3308 -5 778 237 93 66 chr21 9083867 9084319 -25823251 - Charlie4a DNA MER1_type -5 503 40 12908 159 34 21 chr21 9084322 9084559 -25823011 - Tigger1 DNA MER2_type 0 2418 2185 210 37 0 0 chr21 9084559 9084586 -25822984 + (TTG)n Simple_repeat Simple_repeat 1 27 0 12908 159 34 21 chr21 9084586 9086736 -25820834 - Tigger1 DNA MER2_type -233 2185 2 1624 201 0 7 chr21 9087683 9087976 -25819594 + AluJo SINE Alu 11 301 -11 1817 149 3 13 chr21 9088935 9089236 -25818334 - AluSx SINE Alu -14 298 1 2226 125 0 0 chr21 9089981 9090277 -25817293 - AluSx SINE Alu -16 296 1 3386 90 14 34 chr21 9090313 9090814 -25816756 + L1PA8A LINE L1 5629 6119 -12 2127 104 34 0 chr21 9090820 9091117 -25816453 + AluY SINE Alu 1 307 -4 501 343 107 66 chr21 9091117 9091648 -25815922 - L2 LINE L2 -2704 610 58 23 33 0 0 chr21 9092176 9092206 -25815364 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr21 9092495 9092532 -25815038 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr21 9093654 9093682 -25813888 + AT_rich Low_complexity Low_complexity 1 28 0 2152 161 46 15 chr21 9094039 9094430 -25813140 - MER61D LTR ERV1 0 501 99 20473 123 27 15 chr21 9094445 9094706 -25812864 - MER61D-int LTR ERV1 0 5217 4961 2054 122 0 14 chr21 9094706 9095002 -25812568 + AluSx SINE Alu 5 296 -16 20473 123 27 15 chr21 9095002 9097946 -25809624 - MER61D-int LTR ERV1 -256 4961 1972 2624 153 2 13 chr21 9097925 9098464 -25809106 - MER61D-int LTR ERV1 -3574 2012 1214 1175 109 11 11 chr21 9098465 9098640 -25808930 - MER61D LTR ERV1 -184 317 143 2326 201 95 87 chr21 9098640 9099637 -25807933 - MER61D-int LTR ERV1 -4060 1157 153 309 103 0 17 chr21 9099647 9099705 -25807865 + Alu SINE Alu 1 57 -243 3509 129 9 9 chr21 9099705 9100263 -25807307 - MER61-int LTR ERV1 -2066 3151 2594 1142 82 0 13 chr21 9100267 9100425 -25807145 + AluSc SINE Alu 70 225 -84 249 212 141 12 chr21 9100425 9100510 -25807060 + LTR10A LTR ERV1 3 98 -511 1653 152 65 50 chr21 9100560 9100940 -25806630 + LTR10A LTR ERV1 177 609 0 579 49 12 0 chr21 9100940 9101022 -25806548 + AluSc SINE Alu 220 302 -7 32 67 0 0 chr21 9101128 9101188 -25806382 + AT_rich Low_complexity Low_complexity 1 60 0 285 283 72 100 chr21 9102122 9102401 -25805169 + MLT1I LTR MaLR 111 381 -28 980 212 99 75 chr21 9105812 9105922 -25801648 + MER31B LTR ERV1 3 109 -357 1761 180 3 7 chr21 9105922 9106217 -25801353 + AluJo SINE Alu 1 294 -18 980 212 99 75 chr21 9106217 9106559 -25801011 + MER31B LTR ERV1 109 466 0 1117 159 84 1 chr21 9106639 9107041 -25800529 - MER31A LTR ERV1 -6 479 1 2626 195 82 33 chr21 9107324 9108063 -25799507 + LTR48 LTR ERV1 7 699 -8 28 29 0 0 chr21 9109330 9109365 -25798205 + AT_rich Low_complexity Low_complexity 1 35 0 1910 208 88 11 chr21 9109627 9110094 -25797476 + MER67C LTR ERV1 3 505 -205 1039 125 57 5 chr21 9110146 9110338 -25797232 + Tigger5 DNA MER2_type 2030 2231 -92 3671 156 99 3 chr21 9110331 9110974 -25796596 + MER50 LTR ERV1 7 711 -23 533 189 11 0 chr21 9110974 9111069 -25796501 + Tigger5 DNA MER2_type 2228 2323 0 1035 171 9 23 chr21 9111069 9111233 -25796337 + MER67C LTR ERV1 504 666 -44 2421 85 3 0 chr21 9111233 9111538 -25796032 + AluY SINE Alu 1 306 -5 1035 171 9 23 chr21 9111538 9111580 -25795990 + MER67C LTR ERV1 666 707 -3 2280 190 113 29 chr21 9111814 9112501 -25795069 + LTR48 LTR ERV1 7 787 0 374 244 38 30 chr21 9112501 9112628 -25794942 - MER110A LTR ERV1 -339 129 2 3849 169 43 34 chr21 9112695 9113482 -25794088 + LTR39 LTR ERV1 1 794 0 183 42 0 0 chr21 9114605 9114629 -25792941 + (TA)n Simple_repeat Simple_repeat 2 25 0 5410 100 1 3 chr21 9114788 9115549 -25792021 + L1PA11 LINE L1 5413 6172 -2 1624 165 19 0 chr21 9115810 9116070 -25791500 + AluJo SINE Alu 23 287 -25 22 0 0 0 chr21 9116148 9116170 -25791400 + AT_rich Low_complexity Low_complexity 1 22 0 553 332 37 0 chr21 9116197 9116387 -25791183 - MIR SINE MIR -38 224 28 2079 109 3 3 chr21 9116852 9117183 -25790387 - AluSc SINE Alu 0 331 1 1352 157 39 26 chr21 9117650 9117879 -25789691 + MER1B DNA MER1_type 59 290 -49 1790 129 40 18 chr21 9118739 9119017 -25788553 + THE1B LTR MaLR 1 284 -80 1393 68 0 0 chr21 9119881 9120058 -25787512 + AluY SINE Alu 135 311 0 21 0 0 0 chr21 9120527 9120548 -25787022 + AT_rich Low_complexity Low_complexity 1 21 0 498 270 76 38 chr21 9120670 9120855 -25786715 + MER63A DNA MER1_type 1 192 -18 536 168 0 9 chr21 9124420 9124527 -25783043 + FLAM_C SINE Alu 36 141 -2 526 237 96 40 chr21 9124529 9124706 -25782864 - MLT1L LTR MaLR -87 528 342 1780 154 18 7 chr21 9125263 9125573 -25781997 + AluSx SINE Alu 1 313 0 453 333 108 0 chr21 9125723 9125909 -25781661 + MIR SINE MIR 9 214 -48 1889 127 67 51 chr21 9127148 9127479 -25780091 + MER1B DNA MER1_type 1 336 -1 26 50 0 0 chr21 9127760 9127800 -25779770 + AT_rich Low_complexity Low_complexity 1 40 0 29 78 0 0 chr21 9129066 9129130 -25778440 + AT_rich Low_complexity Low_complexity 1 64 0 1072 231 166 92 chr21 9129525 9130134 -25777436 - MLT1E1 LTR MaLR 0 654 1 848 214 24 0 chr21 9133776 9133944 -25773626 - MLT1A1 LTR MaLR 0 365 194 251 214 0 0 chr21 9134324 9134366 -25773204 - MLT1J2 LTR MaLR -132 318 277 267 54 0 0 chr21 9134372 9134409 -25773161 + (TTTTTG)n Simple_repeat Simple_repeat 3 39 0 793 289 19 27 chr21 9134919 9135182 -25772388 - MIR SINE MIR 0 262 2 2566 30 0 3 chr21 9135351 9135652 -25771918 - AluY SINE Alu -11 300 1 242 299 0 15 chr21 9135692 9135759 -25771811 + L2 LINE L2 3229 3294 -19 35 0 0 0 chr21 9135949 9135984 -25771586 + AT_rich Low_complexity Low_complexity 1 35 0 4870 167 9 16 chr21 9136003 9136943 -25770627 - L1PB4 LINE L1 -1 6155 5222 5084 167 14 3 chr21 9139449 9140364 -25767206 - L1MA4 LINE L1 0 6300 5376 184 220 169 0 chr21 9140571 9140630 -25766940 + L2 LINE L2 3192 3260 -12 24 0 0 0 chr21 9140714 9140738 -25766832 + AT_rich Low_complexity Low_complexity 1 24 0 573 121 12 0 chr21 9142682 9142765 -25764805 - AluJb SINE Alu -17 295 212 1026 255 42 27 chr21 9142772 9143381 -25764189 - LTR48B LTR ERV1 -1 643 1 285 184 9 167 chr21 9143381 9143487 -25764083 + MLT1C LTR MaLR 60 147 -320 911 207 10 29 chr21 9143485 9143693 -25763877 + MLT1C LTR MaLR 264 467 0 1921 156 27 30 chr21 9143724 9144089 -25763481 - THE1C LTR MaLR 0 375 12 2511 104 16 19 chr21 9144655 9145031 -25762539 - THE1C LTR MaLR 0 375 1 195 220 0 0 chr21 9145037 9145087 -25762483 + CT-rich Low_complexity Low_complexity 27 76 0 324 0 0 0 chr21 9145134 9145170 -25762400 + (TA)n Simple_repeat Simple_repeat 2 37 0 2597 40 0 3 chr21 9145170 9145470 -25762100 - AluY SINE Alu -12 299 1 2201 136 30 22 chr21 9145742 9146103 -25761467 - THE1B LTR MaLR 0 364 1 676 241 70 0 chr21 9149878 9150065 -25757505 + MER67D LTR ERV1 310 509 -5 22 56 0 0 chr21 9151106 9151142 -25756428 + AT_rich Low_complexity Low_complexity 1 36 0 229 255 0 0 chr21 9151143 9151190 -25756380 - MIR SINE MIR -208 54 8 2386 43 0 0 chr21 9151243 9151562 -25756008 + AluY SINE Alu 5 323 0 261 337 109 27 chr21 9151705 9151889 -25755681 - MIR SINE MIR 0 262 64 229 136 30 0 chr21 9152139 9152205 -25755365 + (CA)n Simple_repeat Simple_repeat 1 68 0 190 156 31 0 chr21 9152237 9152301 -25755269 + (CA)n Simple_repeat Simple_repeat 1 66 0 190 156 31 0 chr21 9152333 9152397 -25755173 + (CA)n Simple_repeat Simple_repeat 1 66 0 1391 102 68 34 chr21 9153331 9153567 -25754003 - L1PA14 LINE L1 -6 6155 5912 1725 110 8 0 chr21 9154360 9154596 -25752974 + AluSq SINE Alu 1 238 -75 469 186 23 0 chr21 9155333 9155419 -25752151 + FLAM_A SINE Alu 37 124 -18 1059 309 36 18 chr21 9155481 9155872 -25751698 - LTR16C LTR ERVL -4 487 90 244 286 48 82 chr21 9156019 9156200 -25751370 - L1MC/D LINE L1 -2260 5548 5379 2494 88 0 0 chr21 9156200 9156508 -25751062 - AluSp SINE Alu -5 308 1 244 286 48 82 chr21 9156508 9156620 -25750950 - L1MC/D LINE L1 -2429 5379 5265 5006 153 36 39 chr21 9156871 9157161 -25750409 - L1MA5A LINE L1 0 6297 6008 3434 111 6 14 chr21 9157161 9157676 -25749894 + MER9 LTR ERVK 1 511 0 5006 153 36 39 chr21 9157676 9158620 -25748950 - L1MA5A LINE L1 -289 6008 5061 682 231 0 0 chr21 9159179 9159300 -25748270 + FLAM_A SINE Alu 2 122 -11 286 189 40 0 chr21 9159326 9159400 -25748170 + L1MB2 LINE L1 6094 6170 -1 2154 120 3 0 chr21 9159402 9159694 -25747876 + AluSx SINE Alu 1 293 -19 25 31 0 0 chr21 9159699 9159731 -25747839 + AT_rich Low_complexity Low_complexity 1 32 0 402 291 51 0 chr21 9160980 9161097 -25746473 + MLT1J1 LTR MaLR 1 123 -323 1653 165 88 3 chr21 9161105 9161390 -25746180 + THE1-int LTR MaLR 797 1105 -475 1101 258 16 0 chr21 9161684 9161936 -25745634 - MLT1A1 LTR MaLR 0 365 110 339 133 13 0 chr21 9162037 9162097 -25745473 + LTR41 LTR ERVL 715 795 0 796 255 98 51 chr21 9162161 9162671 -25744899 + HAL1 LINE L1 617 1150 -1357 2300 89 0 3 chr21 9162875 9163168 -25744402 + AluSx SINE Alu 8 299 -13 597 297 68 4 chr21 9163187 9163450 -25744120 + HAL1 LINE L1 1404 1683 -824 540 298 115 68 chr21 9163602 9164002 -25743568 + HAL1 LINE L1 1877 2295 -212 2359 90 0 6 chr21 9164139 9164451 -25743119 - AluY SINE Alu -1 310 1 2197 116 3 0 chr21 9164962 9165272 -25742298 - AluSx SINE Alu -1 311 1 412 387 0 28 chr21 9166026 9166238 -25741332 + L3 LINE CR1 1352 1557 -20 252 0 0 0 chr21 9167011 9167039 -25740531 + (TTTG)n Simple_repeat Simple_repeat 4 31 0 22 0 0 0 chr21 9167603 9167625 -25739945 + AT_rich Low_complexity Low_complexity 1 22 0 2181 189 29 10 chr21 9167928 9168346 -25739224 - MSTB1 LTR MaLR -6 426 1 288 299 37 37 chr21 9168465 9168572 -25738998 - MIR SINE MIR -151 111 5 3774 141 10 72 chr21 9169967 9170699 -25736871 - LTR8 LTR ERV1 -5 686 1 450 228 20 0 chr21 9171173 9171274 -25736296 - MIR SINE MIR 0 262 160 1966 200 83 33 chr21 9171276 9171756 -25735814 - MLT1D LTR MaLR -1 504 1 551 275 84 14 chr21 9171760 9171902 -25735668 - MIR SINE MIR -109 153 2 388 263 6 70 chr21 9172279 9172435 -25735135 + MER5A DNA MER1_type 43 188 -1 715 191 98 17 chr21 9172466 9172639 -25734931 + MER20 DNA MER1_type 1 187 -32 21 36 0 0 chr21 9172843 9172871 -25734699 + AT_rich Low_complexity Low_complexity 1 28 0 2404 94 0 0 chr21 9172999 9173306 -25734264 + AluSc SINE Alu 1 307 -2 361 220 154 0 chr21 9173353 9173444 -25734126 + MIR SINE MIR 38 142 -120 48 43 0 0 chr21 9175788 9175857 -25731713 + AT_rich Low_complexity Low_complexity 1 69 0 269 333 22 15 chr21 9176028 9176163 -25731407 + (TATATG)n Simple_repeat Simple_repeat 5 140 0 1016 139 0 0 chr21 9176234 9176399 -25731171 + L1MA4 LINE L1 6129 6293 -7 28 0 0 0 chr21 9176482 9176510 -25731060 + AT_rich Low_complexity Low_complexity 1 28 0 221 0 35 0 chr21 9178112 9178141 -25729429 + (CATA)n Simple_repeat Simple_repeat 3 32 0 297 167 0 0 chr21 9178620 9178674 -25728896 + GA-rich Low_complexity Low_complexity 3 56 0 1469 194 45 45 chr21 9179398 9179779 -25727791 + MLT1B LTR MaLR 10 390 0 204 97 0 0 chr21 9179857 9179888 -25727682 + (TTTTC)n Simple_repeat Simple_repeat 1 31 0 202 309 128 0 chr21 9180907 9181001 -25726569 - MIR SINE MIR -123 139 34 264 284 0 0 chr21 9182312 9182379 -25725191 + (TATATG)n Simple_repeat Simple_repeat 2 68 0 27 0 0 0 chr21 9182382 9182409 -25725161 + AT_rich Low_complexity Low_complexity 1 27 0 5545 122 40 7 chr21 9182508 9183562 -25724008 - L1PA14 LINE L1 -1 6160 5098 328 188 12 12 chr21 9185727 9185812 -25721758 + CT-rich Low_complexity Low_complexity 2 86 0 357 292 53 0 chr21 9186291 9186404 -25721166 + MIR3 SINE MIR 81 199 -9 1030 86 33 0 chr21 9186548 9186699 -25720871 - L1PA11 LINE L1 -1 6173 6018 367 155 0 0 chr21 9187159 9187217 -25720353 + LTR16C LTR ERVL 425 482 -9 189 0 0 0 chr21 9187249 9187270 -25720300 + (CA)n Simple_repeat Simple_repeat 1 21 0 23 0 0 0 chr21 9187599 9187622 -25719948 + AT_rich Low_complexity Low_complexity 1 23 0 458 136 118 55 chr21 9188022 9188132 -25719438 + FLAM_C SINE Alu 5 121 -12 25 0 0 0 chr21 9188135 9188160 -25719410 + AT_rich Low_complexity Low_complexity 1 25 0 460 283 189 0 chr21 9188382 9188562 -25719008 + L2 LINE L2 2725 2938 -376 23 0 0 0 chr21 9189181 9189204 -25718366 + AT_rich Low_complexity Low_complexity 1 23 0 1737 162 11 0 chr21 9191122 9191436 -25716134 - AluJo SINE Alu 0 319 3 350 331 24 36 chr21 9191750 9191916 -25715654 + L2 LINE L2 3150 3313 0 443 288 27 14 chr21 9192359 9192505 -25715065 - L3 LINE CR1 -751 826 679 1638 218 43 48 chr21 9192608 9193071 -25714499 - MLT1C LTR MaLR 0 467 7 189 0 0 0 chr21 9193234 9193255 -25714315 + (TG)n Simple_repeat Simple_repeat 2 22 0 2343 78 0 3 chr21 9193369 9193663 -25713907 - AluSc SINE Alu -16 293 1 22 0 0 0 chr21 9194532 9194554 -25713016 + AT_rich Low_complexity Low_complexity 1 22 0 746 134 0 8 chr21 9195414 9195533 -25712037 - FLAM_C SINE Alu -25 118 1 369 114 0 43 chr21 9196503 9196573 -25710997 - L1MC2 LINE L1 -130 6214 6148 271 45 68 0 chr21 9196608 9196652 -25710918 + L1MC2 LINE L1 6150 6196 -148 1238 194 30 11 chr21 9196616 9196879 -25710691 - L1MC2 LINE L1 -160 6184 5917 21 89 0 0 chr21 9197331 9197387 -25710183 + AT_rich Low_complexity Low_complexity 1 56 0 196 120 40 0 chr21 9198750 9198800 -25708770 + (TCTA)n Simple_repeat Simple_repeat 1 52 0 216 0 0 0 chr21 9199970 9199994 -25707576 + (TC)n Simple_repeat Simple_repeat 2 25 0 192 152 0 0 chr21 9202453 9202486 -25705084 + L2 LINE L2 2703 2735 -579 1650 254 28 24 chr21 9202871 9203410 -25704160 - MLT1F LTR MaLR 0 542 2 4896 133 13 1 chr21 9204443 9205917 -25701653 - L1PA16 LINE L1 -9 6157 4705 1121 262 80 31 chr21 9207981 9208405 -25699165 + MSTB2 LTR MaLR 1 445 -12 1602 204 64 12 chr21 9208741 9209085 -25698485 + MLT1A1 LTR MaLR 4 365 0 256 316 63 0 chr21 9211687 9211766 -25695804 - L2 LINE L2 -50 3222 3139 1392 179 47 50 chr21 9212245 9212542 -25695028 - AluJo SINE Alu -16 296 1 2052 183 49 2 chr21 9213259 9213668 -25693902 + MSTA LTR MaLR 1 428 0 597 171 0 0 chr21 9215206 9215323 -25692247 + (TG)n Simple_repeat Simple_repeat 2 118 0 2244 107 3 0 chr21 9215516 9215816 -25691754 - AluSp SINE Alu -12 301 1 423 270 97 5 chr21 9216804 9216989 -25690581 - LTR33A LTR ERVL -91 432 231 1592 187 62 30 chr21 9217067 9217436 -25690134 + MLT1B LTR MaLR 1 381 -9 252 246 150 20 chr21 9217619 9217754 -25689816 - MIR SINE MIR -82 180 2 360 0 0 0 chr21 9217892 9217932 -25689638 + (TG)n Simple_repeat Simple_repeat 1 40 0 1531 176 23 0 chr21 9218082 9218338 -25689232 - AluJb SINE Alu -20 292 31 219 167 0 0 chr21 9218394 9218436 -25689134 + (TG)n Simple_repeat Simple_repeat 2 43 0 1204 119 5 25 chr21 9219714 9219915 -25687655 + L1PA11 LINE L1 5977 6173 -1 2420 49 0 7 chr21 9220166 9220470 -25687100 + AluY SINE Alu 1 302 -9 926 201 67 24 chr21 9221486 9221695 -25685875 + MER20 DNA MER1_type 1 218 -1 21 36 0 0 chr21 9222473 9222501 -25685069 + AT_rich Low_complexity Low_complexity 1 28 0 578 250 0 8 chr21 9222709 9222829 -25684741 + MER45A DNA AcHobo 59 177 -1 1596 195 7 0 chr21 9222995 9223292 -25684278 + L1PB4 LINE L1 5808 6106 -50 2663 98 5 5 chr21 9223292 9223668 -25683902 + MLT2A1 LTR ERVL 1 376 -68 326 213 31 6 chr21 9223706 9223870 -25683700 + (TA)n Simple_repeat Simple_repeat 1 168 0 359 80 0 2147483648 chr21 9223839 9223907 -25683663 + MLT2A1 LTR ERVL 390 444 0 243 125 0 21 chr21 9223907 9223955 -25683615 + L1PA16 LINE L1 6102 6148 -18 337 266 89 32 chr21 9223981 9224105 -25683465 - MER20 DNA MER1_type -8 211 81 1942 131 10 10 chr21 9224677 9224989 -25682581 + AluSx SINE Alu 1 312 0 25 0 0 0 chr21 9226124 9226149 -25681421 + AT_rich Low_complexity Low_complexity 1 25 0 2205 69 3 38 chr21 9226820 9227140 -25680430 + AluY SINE Alu 1 309 -2 339 345 99 0 chr21 9227323 9227494 -25680076 - MIR SINE MIR -74 188 1 28 61 0 0 chr21 9228085 9228134 -25679436 + AT_rich Low_complexity Low_complexity 1 49 0 327 308 15 15 chr21 9228355 9228553 -25679017 + L1MC/D LINE L1 2190 2387 -3759 1971 148 0 0 chr21 9228679 9228977 -25678593 - AluSx SINE Alu -14 298 1 1918 162 0 10 chr21 9229526 9229929 -25677641 - AluJb SINE Alu 0 405 6 21 0 0 0 chr21 9230391 9230412 -25677158 + AT_rich Low_complexity Low_complexity 1 21 0 325 257 80 70 chr21 9230646 9230783 -25676787 + L1MC/D LINE L1 2676 2817 -3329 2428 151 51 7 chr21 9230783 9231193 -25676377 - MSTA LTR MaLR 0 428 1 325 257 80 70 chr21 9231193 9231242 -25676328 + L1MC/D LINE L1 2817 2864 -3282 218 274 0 12 chr21 9231357 9231441 -25676129 + A-rich Low_complexity Low_complexity 6 88 0 2571 42 0 0 chr21 9232674 9232980 -25674590 + AluY SINE Alu 1 306 -5 553 258 85 31 chr21 9232993 9233253 -25674317 + L1MC/D LINE L1 5286 5559 -2249 5091 159 13 8 chr21 9233282 9234568 -25673002 - L1PA16 LINE L1 -4 6162 4874 5520 221 17 15 chr21 9234569 9235873 -25671697 + L1P LINE L1 3382 4688 -1458 295 225 12 0 chr21 9235875 9235955 -25671615 + L1 LINE L1 4786 4866 -1280 190 143 41 0 chr21 9236236 9236285 -25671285 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 191 273 15 30 chr21 9236702 9236768 -25670802 + MIR SINE MIR 82 146 -62 1911 126 4 4 chr21 9236959 9237284 -25670286 + AluSc SINE Alu 1 325 0 33 43 0 0 chr21 9237498 9237545 -25670025 + AT_rich Low_complexity Low_complexity 1 47 0 317 118 24 24 chr21 9237545 9237630 -25669940 + (TA)n Simple_repeat Simple_repeat 2 86 0 367 51 17 17 chr21 9238623 9238682 -25668888 + (TAGA)n Simple_repeat Simple_repeat 4 62 0 6413 65 33 4 chr21 9239226 9240199 -25667371 - L1PA7 LINE L1 -6 6148 5151 21341 118 13 16 chr21 9240201 9244616 -25662954 + L1P3 LINE L1 2 4430 -2031 261 0 0 0 chr21 9244971 9245000 -25662570 + (TG)n Simple_repeat Simple_repeat 2 30 0 4928 116 7 7 chr21 9245707 9246438 -25661132 + LTR17 LTR ERV1 1 731 -49 24 32 0 0 chr21 9246490 9246521 -25661049 + AT_rich Low_complexity Low_complexity 1 31 0 2072 226 117 5 chr21 9247270 9247859 -25659711 + L1MC4 LINE L1 7080 7734 -308 21 57 0 0 chr21 9248275 9248310 -25659260 + AT_rich Low_complexity Low_complexity 1 35 0 299 109 0 0 chr21 9248481 9248527 -25659043 + MADE1 DNA Mariner 35 80 0 438 141 65 33 chr21 9249591 9249683 -25657887 + MLT1J2 LTR MaLR 335 429 -21 220 402 0 0 chr21 9250191 9250298 -25657272 - MIR SINE MIR -33 229 123 225 65 0 0 chr21 9253164 9253195 -25654375 + (TTG)n Simple_repeat Simple_repeat 2 32 0 1959 143 7 10 chr21 9253730 9254038 -25653532 - AluSx SINE Alu 0 312 6 21 36 0 0 chr21 9254621 9254649 -25652921 + AT_rich Low_complexity Low_complexity 1 28 0 7957 87 11 0 chr21 9254724 9256142 -25651428 + L1P3 LINE L1 4242 5670 -484 318 50 0 0 chr21 9256412 9256452 -25651118 + (CA)n Simple_repeat Simple_repeat 2 41 0 670 131 0 0 chr21 9256508 9256607 -25650963 + AluSp/q SINE Alu 187 285 -28 1839 169 22 34 chr21 9257261 9257522 -25650048 - MER47A DNA MER2_type -1960 363 106 2045 131 123 11 chr21 9257522 9257903 -25649667 - MSTA LTR MaLR -4 424 1 1839 169 22 34 chr21 9257903 9257996 -25649574 - MER47A DNA MER2_type -2217 106 13 1381 244 110 21 chr21 9258029 9258447 -25649123 - MLT2B1 LTR ERVL -65 455 1 240 86 0 0 chr21 9260338 9260373 -25647197 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 185 243 81 27 chr21 9260866 9260940 -25646630 + MER5B DNA MER1_type 101 178 0 207 278 14 14 chr21 9261005 9261077 -25646493 - MER5B DNA MER1_type -80 98 27 25 0 0 0 chr21 9261388 9261413 -25646157 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr21 9261528 9261563 -25646007 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr21 9263767 9263798 -25643772 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr21 9264226 9264268 -25643302 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr21 9264290 9264320 -25643250 + AT_rich Low_complexity Low_complexity 1 30 0 222 315 47 34 chr21 9264585 9264734 -25642836 + L2 LINE L2 1865 2015 -1299 1369 242 65 55 chr21 9265168 9265746 -25641824 + MLT1E3 LTR MaLR 70 624 0 1318 271 80 8 chr21 9265746 9266245 -25641325 - L1ME3A LINE L1 -88 6082 5548 641 304 92 50 chr21 9266316 9266793 -25640777 - L1ME3A LINE L1 -912 5234 4738 369 0 0 0 chr21 9266883 9266924 -25640646 + (CA)n Simple_repeat Simple_repeat 2 42 0 32 26 0 0 chr21 9267051 9267090 -25640480 + AT_rich Low_complexity Low_complexity 1 39 0 376 269 50 17 chr21 9268022 9268141 -25639429 - L1ME3A LINE L1 -2140 4006 3884 1114 199 20 10 chr21 9268273 9268686 -25638884 - LTR54 LTR ERV1 0 510 8 24 67 0 0 chr21 9269959 9270004 -25637566 + AT_rich Low_complexity Low_complexity 1 45 0 2063 106 3 0 chr21 9271465 9271776 -25635794 + AluSq SINE Alu 1 312 0 417 198 0 0 chr21 9271776 9271862 -25635708 + (CATATA)n Simple_repeat Simple_repeat 5 90 0 192 97 0 0 chr21 9272620 9272651 -25634919 + (TC)n Simple_repeat Simple_repeat 2 32 0 191 356 148 0 chr21 9272738 9272853 -25634717 + MIR SINE MIR 52 183 -79 350 294 28 18 chr21 9273480 9273589 -25633981 - MIR SINE MIR -59 149 40 4309 20 0 0 chr21 9273617 9274300 -25633270 + L1P1 LINE L1 5074 5756 -399 1073 136 90 11 chr21 9275968 9276145 -25631425 - AluSg SINE Alu -118 192 2 897 217 30 5 chr21 9276268 9276471 -25631099 - MER3 DNA MER1_type -1 208 1 10289 103 14 0 chr21 9276842 9278194 -25629376 + L1PA8 LINE L1 3841 5202 -970 2246 99 0 7 chr21 9278194 9278496 -25629074 + AluSg SINE Alu 1 300 -10 10289 103 14 0 chr21 9278496 9279477 -25628093 + L1PA8 LINE L1 5202 6167 -5 588 218 59 68 chr21 9281002 9281364 -25626206 - LTR37A LTR ERV1 0 426 42 22 56 0 0 chr21 9281371 9281407 -25626163 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr21 9281567 9281588 -25625982 + AT_rich Low_complexity Low_complexity 1 21 0 511 291 26 0 chr21 9282539 9282690 -25624880 + MIR SINE MIR 56 210 -52 652 230 0 0 chr21 9283112 9283238 -25624332 + FRAM SINE Alu 1 123 -53 1832 205 32 15 chr21 9283238 9283642 -25623928 - L1MA10 LINE L1 -21 6313 5903 1979 177 7 27 chr21 9283631 9284043 -25623527 + L1MA10 LINE L1 5483 5886 -282 195 69 0 0 chr21 9285366 9285395 -25622175 + (TAA)n Simple_repeat Simple_repeat 2 30 0 211 234 0 0 chr21 9285551 9285598 -25621972 + (TA)n Simple_repeat Simple_repeat 2 48 0 222 96 39 19 chr21 9288290 9288342 -25619228 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 535 73 0 0 chr21 9288657 9288755 -25618815 - AluSp/q SINE Alu 0 318 221 184 29 29 29 chr21 9290266 9290300 -25617270 + (CAAAAA)n Simple_repeat Simple_repeat 4 37 0 1773 85 127 0 chr21 9290660 9290919 -25616651 + AluSg SINE Alu 1 292 -8 24 0 0 0 chr21 9291050 9291074 -25616496 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr21 9291145 9291181 -25616389 + AT_rich Low_complexity Low_complexity 1 36 0 287 260 30 30 chr21 9291212 9291381 -25616189 + (CATATA)n Simple_repeat Simple_repeat 3 171 0 29 78 0 0 chr21 9291444 9291508 -25616062 + AT_rich Low_complexity Low_complexity 1 64 0 345 47 0 0 chr21 9291741 9291784 -25615786 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 25 0 0 0 chr21 9293082 9293107 -25614463 + AT_rich Low_complexity Low_complexity 1 25 0 2235 47 0 43 chr21 9293473 9293772 -25613798 - AluY SINE Alu -9 302 17 369 0 0 0 chr21 9293886 9293927 -25613643 + (A)n Simple_repeat Simple_repeat 1 41 0 22 0 0 0 chr21 9294403 9294425 -25613145 + AT_rich Low_complexity Low_complexity 1 22 0 2115 81 20 14 chr21 9294702 9294998 -25612572 + AluSp SINE Alu 1 298 -15 5385 154 24 25 chr21 9295830 9296951 -25610619 - L1MA5 LINE L1 -1 7001 5880 5945 209 51 14 chr21 9296944 9297322 -25610248 - L1MA5 LINE L1 -1357 5491 5129 1951 153 0 13 chr21 9297322 9297629 -25609941 - AluSx SINE Alu -9 303 1 5945 209 51 14 chr21 9297629 9299207 -25608363 - L1MA5 LINE L1 -1719 5129 3076 5582 231 55 19 chr21 9299213 9299928 -25607642 - L1MA5 LINE L1 -3816 3032 2344 1693 145 39 7 chr21 9299928 9300083 -25607487 - AluSx SINE Alu -21 291 122 279 0 0 0 chr21 9300083 9300114 -25607456 + (TG)n Simple_repeat Simple_repeat 1 31 0 1693 145 39 7 chr21 9300114 9300240 -25607330 - AluSx SINE Alu -190 122 1 5582 231 55 19 chr21 9300240 9300478 -25607092 - L1MA5 LINE L1 -4504 2344 2116 216 0 0 0 chr21 9300478 9300502 -25607068 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 5582 231 55 19 chr21 9300502 9300656 -25606914 - L1MA5 LINE L1 -4732 2116 1969 333 0 0 0 chr21 9300656 9300693 -25606877 + (TA)n Simple_repeat Simple_repeat 2 38 0 5582 231 55 19 chr21 9300693 9301284 -25606286 - L1MA5 LINE L1 -4879 1969 1269 526 282 31 41 chr21 9301349 9301544 -25606026 - L1MA5 LINE L1 -6267 582 390 736 253 61 61 chr21 9301564 9301841 -25605729 - L1MA5 LINE L1 -6562 287 11 204 303 119 18 chr21 9301940 9302049 -25605521 + MIR3 SINE MIR 83 202 -6 2037 150 33 11 chr21 9303609 9303976 -25603594 - THE1C LTR MaLR 0 375 1 2651 32 0 0 chr21 9304698 9305007 -25602563 + AluY SINE Alu 1 309 -2 21 82 0 0 chr21 9305681 9305730 -25601840 + AT_rich Low_complexity Low_complexity 1 49 0 2003 120 0 7 chr21 9306691 9307139 -25600431 + AluSq SINE Alu 13 458 0 933 227 23 2 chr21 9307217 9307449 -25600121 + MLT1A1 LTR MaLR 1 251 -123 1620 162 18 7 chr21 9307881 9308158 -25599412 + AluSx SINE Alu 1 280 -32 245 144 44 0 chr21 9308162 9308252 -25599318 + (TA)n Simple_repeat Simple_repeat 2 95 0 568 200 44 62 chr21 9308385 9308545 -25599025 - MER20 DNA MER1_type -25 194 38 2077 94 0 7 chr21 9308797 9309083 -25598487 + AluY SINE Alu 1 284 -27 180 0 0 0 chr21 9309096 9309116 -25598454 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2021 107 17 10 chr21 9310016 9310305 -25597265 + AluSp SINE Alu 1 291 -22 23 0 0 0 chr21 9310305 9310328 -25597242 + AT_rich Low_complexity Low_complexity 1 23 0 294 247 113 0 chr21 9310384 9310481 -25597089 + L1ME4a LINE L1 5944 6051 -70 724 226 51 34 chr21 9312899 9313238 -25594332 - MSTD LTR MaLR 0 396 19 334 68 17 17 chr21 9313799 9313858 -25593712 + (TC)n Simple_repeat Simple_repeat 1 59 0 2178 103 17 0 chr21 9314059 9314351 -25593219 - AluSg SINE Alu -13 297 1 378 0 0 0 chr21 9314541 9314583 -25592987 + (TG)n Simple_repeat Simple_repeat 1 42 0 749 203 123 5 chr21 9314587 9314774 -25592796 + MER2 DNA MER2_type 2 210 -134 188 228 18 0 chr21 9316192 9316249 -25591321 + (TAG)n Simple_repeat Simple_repeat 2 59 0 1661 182 24 7 chr21 9316511 9316802 -25590768 - AluSx SINE Alu -16 296 1 1484 272 15 48 chr21 9316807 9317039 -25590531 - L1MD2 LINE L1 -1 6358 6149 1908 167 14 16 chr21 9317039 9317404 -25590166 - MLT1A1 LTR MaLR 0 365 2 1484 272 15 48 chr21 9317404 9317645 -25589925 - L1MD2 LINE L1 -210 6149 5901 247 307 9 53 chr21 9317795 9317909 -25589661 + L2 LINE L2 3205 3313 0 21 0 0 0 chr21 9318289 9318310 -25589260 + AT_rich Low_complexity Low_complexity 1 21 0 281 26 26 0 chr21 9320155 9320193 -25587377 + (TG)n Simple_repeat Simple_repeat 2 40 0 639 249 151 45 chr21 9320355 9320752 -25586818 + LTR33 LTR ERVL 83 521 0 2084 53 85 11 chr21 9321799 9322080 -25585490 + AluY SINE Alu 1 302 -9 23 33 0 0 chr21 9322357 9322387 -25585183 + AT_rich Low_complexity Low_complexity 1 30 0 460 196 10 0 chr21 9323144 9323241 -25584329 + MER5A DNA MER1_type 9 106 -83 21 0 0 0 chr21 9323334 9323355 -25584215 + AT_rich Low_complexity Low_complexity 1 21 0 347 184 142 57 chr21 9323654 9323795 -25583775 + L2 LINE L2 2637 2789 -525 609 258 72 72 chr21 9323888 9324249 -25583321 + L2 LINE L2 2953 3313 0 305 155 42 14 chr21 9324500 9324571 -25582999 - L1MA5A LINE L1 -3 6294 6222 796 138 48 7 chr21 9324571 9324716 -25582854 - THE1B LTR MaLR -5 359 209 253 297 81 27 chr21 9325019 9325130 -25582440 + L2 LINE L2 3197 3313 0 34 55 0 0 chr21 9325440 9325495 -25582075 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr21 9325586 9325607 -25581963 + AT_rich Low_complexity Low_complexity 1 21 0 29 60 0 0 chr21 9325893 9325943 -25581627 + AT_rich Low_complexity Low_complexity 1 50 0 24 32 0 0 chr21 9325965 9325996 -25581574 + AT_rich Low_complexity Low_complexity 1 31 0 201 330 66 0 chr21 9326468 9326559 -25581011 + L2 LINE L2 2372 2468 -846 233 135 19 0 chr21 9328501 9328553 -25579017 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 22 0 0 0 chr21 9329317 9329339 -25578231 + AT_rich Low_complexity Low_complexity 1 22 0 1491 205 95 31 chr21 9329438 9329882 -25577688 - Tigger6a DNA MER2_type -30 1053 582 2827 215 27 6 chr21 9329881 9330514 -25577056 - Tigger6a DNA MER2_type -433 650 5 403 262 79 0 chr21 9331600 9331726 -25575844 - MIR SINE MIR -26 236 101 2214 131 38 14 chr21 9332416 9332782 -25574788 - THE1C LTR MaLR 0 375 1 254 222 69 0 chr21 9335040 9335112 -25572458 + MLT1I LTR MaLR 90 166 -243 265 330 121 11 chr21 9337541 9337632 -25569938 - L2 LINE L2 -31 3282 3182 393 258 68 74 chr21 9337869 9338059 -25569511 + MLT1F LTR MaLR 149 337 -258 706 288 72 0 chr21 9338053 9338275 -25569295 + MLT1F LTR MaLR 305 542 0 317 321 114 16 chr21 9338654 9338838 -25568732 + L1ME LINE L1 5360 5561 -601 1448 158 0 16 chr21 9339176 9339430 -25568140 + AluJo SINE Alu 63 312 0 24 0 0 0 chr21 9339528 9339552 -25568018 + AT_rich Low_complexity Low_complexity 1 24 0 394 351 40 7 chr21 9340277 9340428 -25567142 - MIR SINE MIR -43 219 64 21 82 0 0 chr21 9340660 9340709 -25566861 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr21 9342428 9342449 -25565121 + AT_rich Low_complexity Low_complexity 1 21 0 351 70 0 0 chr21 9342492 9342549 -25565021 + L1MA2 LINE L1 6248 6304 0 1389 198 65 19 chr21 9343095 9343418 -25564152 - LTR42 LTR ERVL -23 472 135 685 145 24 16 chr21 9343481 9343605 -25563965 - LTR42 LTR ERVL -370 125 1 470 307 42 61 chr21 9344386 9344961 -25562609 - L2 LINE L2 -1030 2284 1276 1644 227 44 57 chr21 9346227 9346774 -25560796 + Charlie1a DNA MER1_type 50 589 -866 2277 88 17 0 chr21 9347932 9348227 -25559343 - AluSq SINE Alu -13 300 1 451 90 0 22 chr21 9349064 9349153 -25558417 + (TG)n Simple_repeat Simple_repeat 2 88 0 21 0 0 0 chr21 9349436 9349457 -25558113 + AT_rich Low_complexity Low_complexity 1 21 0 2339 75 3 7 chr21 9349681 9349987 -25557583 + AluY SINE Alu 3 307 -4 25 0 0 0 chr21 9350100 9350125 -25557445 + AT_rich Low_complexity Low_complexity 1 25 0 907 184 23 6 chr21 9350245 9350419 -25557151 - L1MA9 LINE L1 -232 6080 5904 1110 201 85 61 chr21 9350417 9350745 -25556825 + L1MA9 LINE L1 5553 5888 -424 314 302 0 17 chr21 9351712 9351828 -25555742 + CT-rich Low_complexity Low_complexity 1 114 0 2234 84 7 0 chr21 9353826 9354122 -25553448 - AluSg SINE Alu -12 298 1 27 49 0 0 chr21 9356149 9356190 -25551380 + AT_rich Low_complexity Low_complexity 1 41 0 2041 80 3 27 chr21 9356220 9356520 -25551050 + AluY SINE Alu 3 295 -16 415 220 30 30 chr21 9356826 9356926 -25550644 - MIR SINE MIR -56 206 107 2213 81 0 7 chr21 9356955 9357250 -25550320 - AluSc SINE Alu -13 296 4 30 27 0 0 chr21 9357370 9357407 -25550163 + AT_rich Low_complexity Low_complexity 1 37 0 1299 227 22 22 chr21 9357974 9358295 -25549275 - MER63 DNA MER1_type 0 1061 741 448 128 74 3 chr21 9358466 9358822 -25548748 + (TA)n Simple_repeat Simple_repeat 1 381 0 198 0 0 0 chr21 9359343 9359365 -25548205 + (A)n Simple_repeat Simple_repeat 1 22 0 2452 158 38 14 chr21 9360427 9360932 -25546638 - L1MA4 LINE L1 -3 6297 5781 21 36 0 0 chr21 9360969 9360997 -25546573 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 9362123 9362152 -25545418 + AT_rich Low_complexity Low_complexity 1 29 0 268 198 111 12 chr21 9362363 9362444 -25545126 - L1MA9 LINE L1 -22 6290 6202 746 204 39 23 chr21 9362590 9362882 -25544688 - MLT1A1 LTR MaLR -15 350 1 26 30 0 0 chr21 9363240 9363273 -25544297 + AT_rich Low_complexity Low_complexity 1 33 0 1977 106 4 4 chr21 9364405 9364679 -25542891 - AluSp SINE Alu -39 274 1 1074 224 46 4 chr21 9365014 9365251 -25542319 - MLT1D LTR MaLR -4 501 255 219 309 0 0 chr21 9365274 9365342 -25542228 + CT-rich Low_complexity Low_complexity 3 70 0 1052 202 24 44 chr21 9365342 9365590 -25541980 - MLT1D LTR MaLR -260 245 3 646 297 6 6 chr21 9366435 9366617 -25540953 - MLT1I LTR MaLR -159 250 69 2119 121 0 10 chr21 9367171 9367476 -25540094 - AluSg SINE Alu -8 302 1 1410 184 6 69 chr21 9367817 9368060 -25539510 - AluJo SINE Alu -12 300 80 2382 55 0 39 chr21 9368060 9368371 -25539199 + AluY SINE Alu 2 300 -11 1410 184 6 69 chr21 9368371 9368447 -25539123 - AluJo SINE Alu -232 80 1 1823 145 0 21 chr21 9369571 9369861 -25537709 - AluSx SINE Alu -15 297 14 807 121 16 0 chr21 9370127 9370251 -25537319 - AluSq/x SINE Alu -187 126 1 1871 97 86 0 chr21 9370603 9370871 -25536699 + AluSp SINE Alu 1 291 -22 755 291 62 47 chr21 9372074 9372524 -25535046 + MLT1C LTR MaLR 11 467 0 24 0 0 0 chr21 9372813 9372837 -25534733 + AT_rich Low_complexity Low_complexity 1 24 0 25 51 0 0 chr21 9373617 9373656 -25533914 + AT_rich Low_complexity Low_complexity 1 39 0 1380 227 49 94 chr21 9374383 9375067 -25532503 - L1MC5 LINE L1 -697 7264 6603 2438 74 0 3 chr21 9375473 9375785 -25531785 - AluY SINE Alu 0 311 1 2110 122 10 3 chr21 9377174 9377470 -25530100 + AluSc SINE Alu 1 298 -11 22 0 0 0 chr21 9379295 9379317 -25528253 + AT_rich Low_complexity Low_complexity 1 22 0 251 103 52 69 chr21 9379550 9379608 -25527962 - MLT2B1 LTR ERVL 0 520 464 231 36 0 0 chr21 9379653 9379681 -25527889 + (TA)n Simple_repeat Simple_repeat 2 29 0 477 183 0 0 chr21 9380521 9380603 -25526967 - AluJ/FRAM SINE Alu -17 295 214 384 247 20 20 chr21 9380692 9380838 -25526732 + (TA)n Simple_repeat Simple_repeat 1 146 0 23 33 0 0 chr21 9380889 9380919 -25526651 + AT_rich Low_complexity Low_complexity 1 30 0 1438 199 34 43 chr21 9381045 9381372 -25526198 - MLT2B1 LTR ERVL -196 324 1 2670 268 88 32 chr21 9382130 9382505 -25525065 - L1MDa LINE L1 -1298 5242 4890 5032 69 3 1 chr21 9382505 9383172 -25524398 - L1PA8 LINE L1 0 6172 5505 2670 268 88 32 chr21 9383172 9384164 -25523406 - L1MDa LINE L1 -1650 4890 3798 22 0 0 0 chr21 9384174 9384196 -25523374 + AT_rich Low_complexity Low_complexity 1 22 0 1133 289 73 33 chr21 9384232 9384381 -25523189 - L1MDa LINE L1 -3292 3248 3106 614 65 76 11 chr21 9384381 9384473 -25523097 - L1PA4 LINE L1 -4 6151 6054 1133 289 73 33 chr21 9384473 9384898 -25522672 - L1MDa LINE L1 -3434 3106 2651 460 294 97 42 chr21 9385007 9385316 -25522254 - L1MDa LINE L1 -4828 1712 1387 822 311 52 30 chr21 9387296 9387795 -25519775 + L1MC5 LINE L1 7421 7930 -31 383 38 19 0 chr21 9389672 9389725 -25517845 + (TAGA)n Simple_repeat Simple_repeat 1 54 0 330 298 88 0 chr21 9391075 9391189 -25516381 + MIR SINE MIR 20 143 -119 5900 155 49 22 chr21 9391395 9391437 -25516133 + Tigger3b DNA MER2_type 36 75 -2953 2000 105 20 30 chr21 9391437 9391732 -25515838 + AluSc SINE Alu 1 292 -17 5900 155 49 22 chr21 9391732 9392851 -25514719 + Tigger3b DNA MER2_type 75 1228 -3 219 232 18 18 chr21 9392874 9392930 -25514640 + (TG)n Simple_repeat Simple_repeat 1 56 0 23 68 0 0 chr21 9393400 9393444 -25514126 + AT_rich Low_complexity Low_complexity 1 44 0 233 106 0 21 chr21 9394429 9394476 -25513094 + (TTTA)n Simple_repeat Simple_repeat 3 48 0 195 42 0 0 chr21 9394668 9394692 -25512878 + (TG)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr21 9394691 9394712 -25512858 + (GA)n Simple_repeat Simple_repeat 1 21 0 431 352 38 14 chr21 9396784 9396997 -25510573 - MIR SINE MIR -24 238 21 244 310 103 0 chr21 9398037 9398124 -25509446 - MIR SINE MIR -1 261 166 578 242 76 45 chr21 9398532 9398730 -25508840 - MER77 LTR ERV1 -380 225 22 27 62 0 0 chr21 9398805 9398853 -25508717 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr21 9399305 9399326 -25508244 + AT_rich Low_complexity Low_complexity 1 21 0 2323 70 0 0 chr21 9399326 9399612 -25507958 - AluSg SINE Alu -24 286 1 27 29 0 0 chr21 9400492 9400526 -25507044 + AT_rich Low_complexity Low_complexity 1 34 0 6618 223 39 33 chr21 9400567 9402773 -25504797 + L1MC1 LINE L1 3120 5366 -967 1777 147 7 33 chr21 9402773 9403080 -25504490 + AluJb SINE Alu 1 299 -13 6618 223 39 33 chr21 9403080 9404049 -25503521 + L1MC1 LINE L1 5366 6327 -6 420 302 69 29 chr21 9404417 9404662 -25502908 - MIR SINE MIR -6 256 2 21 57 0 0 chr21 9405998 9406033 -25501537 + AT_rich Low_complexity Low_complexity 1 35 0 2086 97 14 10 chr21 9407039 9407329 -25500241 - AluSq SINE Alu -22 291 1 690 199 31 42 chr21 9407391 9407582 -25499988 + MER53 DNA DNA 1 189 0 23 33 0 0 chr21 9407694 9407724 -25499846 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr21 9407837 9407861 -25499709 + AT_rich Low_complexity Low_complexity 1 24 0 308 325 110 0 chr21 9408177 9408340 -25499230 - L2 LINE L2 -569 2745 2565 198 344 69 61 chr21 9408343 9408359 -25499211 - L2 LINE L2 -710 2604 2590 2169 109 0 3 chr21 9408359 9408662 -25498908 + AluSc SINE Alu 1 302 -7 198 344 69 61 chr21 9408662 9408892 -25498678 - L2 LINE L2 -724 2590 2356 22 0 0 0 chr21 9409828 9409850 -25497720 + AT_rich Low_complexity Low_complexity 1 22 0 208 238 12 12 chr21 9410809 9410889 -25496681 + CT-rich Low_complexity Low_complexity 1 80 0 195 129 0 0 chr21 9410894 9410925 -25496645 + (TTCC)n Simple_repeat Simple_repeat 1 31 0 22 56 0 0 chr21 9411078 9411114 -25496456 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr21 9411543 9411565 -25496005 + AT_rich Low_complexity Low_complexity 1 22 0 37 39 0 0 chr21 9411863 9411914 -25495656 + AT_rich Low_complexity Low_complexity 1 51 0 294 217 11 33 chr21 9412954 9413046 -25494524 - MLT1G1 LTR MaLR 0 626 537 466 289 44 36 chr21 9413107 9413332 -25494238 - MLT1G1 LTR MaLR -206 389 163 243 128 21 0 chr21 9413358 9413405 -25494165 - L1MA4A LINE L1 -7 6296 6249 739 185 56 0 chr21 9413400 9413562 -25494008 - L1 LINE L1 -794 5352 5182 21 36 0 0 chr21 9413643 9413671 -25493899 + AT_rich Low_complexity Low_complexity 1 28 0 597 286 99 89 chr21 9414696 9415018 -25492552 + L2 LINE L2 2894 3222 -91 899 128 0 8 chr21 9415018 9415151 -25492419 + FLAM_C SINE Alu 2 133 0 597 286 99 89 chr21 9415151 9415244 -25492326 + L2 LINE L2 3222 3313 0 23 54 0 0 chr21 9415274 9415311 -25492259 + AT_rich Low_complexity Low_complexity 1 37 0 690 365 4 8 chr21 9416191 9416446 -25491124 - MIR SINE MIR -3 259 6 22 0 0 0 chr21 9417409 9417431 -25490139 + AT_rich Low_complexity Low_complexity 1 22 0 472 232 45 45 chr21 9417536 9417713 -25489857 - MER5B DNA MER1_type 0 178 2 609 311 48 29 chr21 9418776 9419152 -25488418 + L1ME3A LINE L1 5691 6073 -97 25 0 0 0 chr21 9419546 9419571 -25487999 + AT_rich Low_complexity Low_complexity 1 25 0 2050 98 22 0 chr21 9420055 9420359 -25487211 + AluSx SINE Alu 1 310 0 216 0 0 0 chr21 9420548 9420572 -25486998 + (CAA)n Simple_repeat Simple_repeat 1 24 0 23 0 0 0 chr21 9421959 9421982 -25485588 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr21 9422383 9422413 -25485157 + AT_rich Low_complexity Low_complexity 1 30 0 751 176 0 22 chr21 9422551 9422687 -25484883 + FLAM_C SINE Alu 1 133 0 714 276 6 11 chr21 9423779 9423953 -25483617 + MIR SINE MIR 22 194 -68 26 30 0 0 chr21 9424520 9424553 -25483017 + AT_rich Low_complexity Low_complexity 1 33 0 375 299 0 56 chr21 9424814 9424958 -25482612 - L2 LINE L2 0 3313 3178 462 352 93 11 chr21 9424990 9425047 -25482523 - L2 LINE L2 -1121 2193 2142 2091 123 7 3 chr21 9425047 9425357 -25482213 + AluSq SINE Alu 1 311 -2 462 352 93 11 chr21 9425357 9425750 -25481820 - L2 LINE L2 -1172 2142 1706 26 50 0 0 chr21 9426361 9426401 -25481169 + AT_rich Low_complexity Low_complexity 1 40 0 2435 81 0 0 chr21 9426594 9426901 -25480669 - AluSc SINE Alu -2 307 1 195 318 0 0 chr21 9427471 9427534 -25480036 - MIR SINE MIR -15 247 185 23 33 0 0 chr21 9427785 9427815 -25479755 + AT_rich Low_complexity Low_complexity 1 30 0 829 197 22 45 chr21 9427815 9428127 -25479443 - L1MA9 LINE L1 -21 6291 5891 1070 278 56 28 chr21 9429227 9429587 -25477983 + LTR16A LTR ERVL 2 371 -79 1849 194 23 59 chr21 9429862 9430232 -25477338 + MSTA LTR MaLR 6 359 -69 2197 118 0 0 chr21 9430232 9430537 -25477033 - AluSx SINE Alu -7 305 1 1849 194 23 59 chr21 9430537 9430604 -25476966 + MSTA LTR MaLR 359 427 -1 22 35 0 0 chr21 9431190 9431219 -25476351 + AT_rich Low_complexity Low_complexity 1 29 0 408 40 0 0 chr21 9431287 9431337 -25476233 + (TG)n Simple_repeat Simple_repeat 2 51 0 180 0 0 0 chr21 9433859 9433879 -25473691 + (T)n Simple_repeat Simple_repeat 1 20 0 641 307 44 9 chr21 9434902 9435162 -25472408 + MER5A DNA MER1_type 1 176 -2 864 238 34 72 chr21 9435195 9435460 -25472110 + MIR SINE MIR 3 257 -5 2284 101 3 0 chr21 9435516 9435823 -25471747 - AluSp SINE Alu -5 308 1 28 0 0 0 chr21 9437388 9437416 -25470154 + AT_rich Low_complexity Low_complexity 1 28 0 219 260 0 0 chr21 9438137 9438187 -25469383 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 22 0 0 0 chr21 9438287 9438309 -25469261 + AT_rich Low_complexity Low_complexity 1 22 0 1701 227 8 3 chr21 9438792 9439153 -25468417 - MLT1A1 LTR MaLR -2 363 1 22 35 0 0 chr21 9441953 9441982 -25465588 + AT_rich Low_complexity Low_complexity 1 29 0 1135 188 110 31 chr21 9442348 9442603 -25464967 - AluJo SINE Alu -37 275 1 504 0 0 0 chr21 9444075 9444131 -25463439 + (CA)n Simple_repeat Simple_repeat 2 57 0 213 44 22 44 chr21 9444703 9444748 -25462822 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 182 261 58 14 chr21 9444939 9445008 -25462562 + L2 LINE L2 3145 3216 -56 3250 229 32 24 chr21 9445013 9445846 -25461724 + L1MD2 LINE L1 5493 6332 -27 2263 91 7 0 chr21 9445850 9446147 -25461423 - AluY SINE Alu -12 299 1 192 97 0 0 chr21 9446191 9446222 -25461348 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 236 120 20 0 chr21 9447809 9447859 -25459711 + LTR66 LTR ERVL 164 214 -396 406 141 11 33 chr21 9447859 9447951 -25459619 + (TA)n Simple_repeat Simple_repeat 2 91 0 1736 134 3 35 chr21 9448565 9448855 -25458715 + AluSx SINE Alu 21 301 -11 204 231 0 0 chr21 9448865 9448917 -25458653 + (TG)n Simple_repeat Simple_repeat 2 53 0 262 240 68 103 chr21 9449232 9449378 -25458192 - L2 LINE L2 -10 3303 3163 685 268 104 66 chr21 9450634 9451257 -25456313 + MLT1E1 LTR MaLR 1 647 -7 399 172 106 111 chr21 9451522 9451702 -25455868 + MLT1D LTR MaLR 1 179 -447 498 178 11 11 chr21 9451775 9451865 -25455705 + MLT1D LTR MaLR 301 390 -115 1904 123 8 0 chr21 9451870 9452138 -25455432 + AluSx SINE Alu 1 270 -42 319 136 0 123 chr21 9452141 9452161 -25455409 + MLT1D LTR MaLR 556 577 -49 1527 96 59 14 chr21 9452161 9452381 -25455189 - MER30 DNA MER1_type 0 230 1 319 136 0 123 chr21 9452381 9452441 -25455129 + MLT1D LTR MaLR 577 626 0 6356 172 32 6 chr21 9452499 9453690 -25453880 + Tigger3b DNA MER2_type 10 1231 0 225 200 73 0 chr21 9453861 9453916 -25453654 - MER5A DNA MER1_type -83 106 48 11497 166 20 17 chr21 9453972 9456136 -25451434 + Tigger1 DNA MER2_type 2 2173 -245 21 0 0 0 chr21 9456329 9456350 -25451220 + AT_rich Low_complexity Low_complexity 1 21 0 2993 80 40 0 chr21 9458103 9458530 -25449040 + L1PA10 LINE L1 5724 6167 -1 31 58 0 0 chr21 9458731 9458783 -25448787 + AT_rich Low_complexity Low_complexity 1 52 0 2598 169 43 0 chr21 9458952 9459437 -25448133 + L1PA16 LINE L1 5661 6166 0 21 0 0 0 chr21 9460615 9460636 -25446934 + AT_rich Low_complexity Low_complexity 1 21 0 320 324 117 24 chr21 9461063 9461276 -25446294 + L1MB8 LINE L1 5143 5375 -771 300 357 32 6 chr21 9461532 9461689 -25445881 + L1MB8 LINE L1 5717 5877 -301 26 50 0 0 chr21 9462276 9462316 -25445254 + AT_rich Low_complexity Low_complexity 1 40 0 267 308 26 17 chr21 9462645 9462762 -25444808 - MIR SINE MIR -122 140 23 288 271 93 14 chr21 9463070 9463210 -25444360 - MIR SINE MIR -30 232 82 31 0 0 0 chr21 9463293 9463324 -25444246 + AT_rich Low_complexity Low_complexity 1 31 0 270 0 0 0 chr21 9469865 9469895 -25437675 + (TG)n Simple_repeat Simple_repeat 1 30 0 2291 95 0 3 chr21 9471055 9471361 -25436209 - AluSx SINE Alu -3 309 5 38 0 0 0 chr21 9471675 9471713 -25435857 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr21 9472338 9472360 -25435210 + AT_rich Low_complexity Low_complexity 1 22 0 306 213 0 0 chr21 9473054 9473115 -25434455 + CT-rich Low_complexity Low_complexity 2 62 0 21 0 0 0 chr21 9473449 9473470 -25434100 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr21 9473758 9473780 -25433790 + AT_rich Low_complexity Low_complexity 1 22 0 503 205 103 19 chr21 9473891 9474047 -25433523 + MIR SINE MIR 85 253 -9 2685 174 50 18 chr21 9475321 9475936 -25431634 - L1MA7 LINE L1 -6 6285 5651 23 0 0 0 chr21 9476144 9476167 -25431403 + AT_rich Low_complexity Low_complexity 1 23 0 326 289 79 40 chr21 9477029 9477181 -25430389 + MER5B DNA MER1_type 21 178 0 2299 91 0 0 chr21 9477675 9477973 -25429597 + AluSc SINE Alu 1 298 -11 222 295 54 0 chr21 9478882 9479011 -25428559 + (TAGG)n Simple_repeat Simple_repeat 2 137 0 935 247 55 12 chr21 9479038 9479293 -25428277 + MLT1F1 LTR MaLR 6 271 -296 682 162 45 45 chr21 9479356 9479510 -25428060 + MLT1F1 LTR MaLR 406 559 -8 2392 47 0 0 chr21 9480151 9480430 -25427140 + AluY SINE Alu 6 284 -27 273 269 15 0 chr21 9480972 9481039 -25426531 + CT-rich Low_complexity Low_complexity 1 68 0 193 321 0 0 chr21 9481260 9481316 -25426254 - MIR SINE MIR -111 151 96 2358 68 0 3 chr21 9481623 9481915 -25425655 + AluY SINE Alu 21 311 0 182 91 30 0 chr21 9482183 9482216 -25425354 + (TAA)n Simple_repeat Simple_repeat 1 34 0 186 43 0 0 chr21 9482780 9482803 -25424767 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 198 71 0 0 chr21 9484259 9484287 -25423283 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 3781 83 88 0 chr21 9484287 9484830 -25422740 - L1PA8 LINE L1 -24 6148 5558 2079 104 13 0 chr21 9484829 9485147 -25422423 - L1PA8A LINE L1 -810 5336 5015 1632 100 4 0 chr21 9485144 9485374 -25422196 + L1PA8A LINE L1 5327 5557 -574 252 198 83 0 chr21 9485452 9485573 -25421997 + (TATAA)n Simple_repeat Simple_repeat 1 131 0 1768 185 28 11 chr21 9486447 9486803 -25420767 + MLT1A1 LTR MaLR 4 365 0 356 375 60 14 chr21 9487271 9487487 -25420083 - MIR SINE MIR -24 238 13 392 158 0 12 chr21 9488007 9488089 -25419481 + (TG)n Simple_repeat Simple_repeat 2 82 0 208 242 73 73 chr21 9488677 9488801 -25418769 + L2 LINE L2 3111 3234 -79 2123 98 0 11 chr21 9489181 9489496 -25418074 + AluSq SINE Alu 1 312 0 1858 138 44 0 chr21 9490693 9490989 -25416581 - AluSg SINE Alu -1 309 1 464 360 78 44 chr21 9491382 9491968 -25415602 + L1M2 LINE L1 3 608 -6241 463 306 4 28 chr21 9492774 9493022 -25414548 + L1PA16 LINE L1 1371 1612 -5238 423 0 0 0 chr21 9493028 9493075 -25414495 + (CA)n Simple_repeat Simple_repeat 2 48 0 5716 250 24 24 chr21 9493079 9495605 -25411965 + L1PA16 LINE L1 1948 4477 -2372 5132 215 19 8 chr21 9495593 9495820 -25411750 + L1PA16 LINE L1 4680 4903 -1966 2067 130 67 14 chr21 9495820 9496166 -25411404 - THE1B LTR MaLR 0 364 1 5132 215 19 8 chr21 9496166 9496373 -25411197 + L1PA16 LINE L1 4903 5106 -1763 189 0 0 0 chr21 9496373 9496394 -25411176 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 5132 215 19 8 chr21 9496394 9497749 -25409821 + L1PA16 LINE L1 5106 6491 -378 279 133 0 0 chr21 9497775 9497820 -25409750 + (CA)n Simple_repeat Simple_repeat 2 46 0 314 132 24 24 chr21 9497851 9497934 -25409636 + (TA)n Simple_repeat Simple_repeat 2 84 0 295 209 33 44 chr21 9497994 9498085 -25409485 + L1MC4 LINE L1 6614 6703 -1339 513 177 16 8 chr21 9498089 9498213 -25409357 + (TA)n Simple_repeat Simple_repeat 2 126 0 300 241 46 0 chr21 9498213 9498300 -25409270 - L1MC4 LINE L1 -1338 6704 6614 226 196 36 18 chr21 9498300 9498356 -25409214 + (TATG)n Simple_repeat Simple_repeat 1 57 0 288 250 48 0 chr21 9498356 9498440 -25409130 - L1MC4 LINE L1 -1340 6702 6615 551 157 41 7 chr21 9498440 9498587 -25408983 + (TA)n Simple_repeat Simple_repeat 2 153 0 245 286 12 0 chr21 9498588 9498672 -25408898 + L1MC4 LINE L1 6614 6698 -1344 1743 176 55 25 chr21 9498653 9499017 -25408553 + L1PA16 LINE L1 6479 6853 -16 3602 43 2 0 chr21 9499541 9499985 -25407585 + L1PA5 LINE L1 5703 6147 -7 939 133 1 10 chr21 9500006 9500158 -25407412 - L1PA13 LINE L1 -22 6150 6002 180 278 0 0 chr21 9500843 9500879 -25406691 - L2 LINE L2 -16 3256 3221 297 357 64 7 chr21 9504341 9504481 -25403089 - L2 LINE L2 0 3272 3125 1682 55 0 9 chr21 9504949 9505167 -25402403 + L1PA5 LINE L1 5939 6154 0 292 333 11 11 chr21 9505451 9505544 -25402026 + MER5A DNA MER1_type 31 123 -66 333 155 0 0 chr21 9505584 9505642 -25401928 + (CA)n Simple_repeat Simple_repeat 2 59 0 461 67 0 40 chr21 9506043 9506118 -25401452 + (CA)n Simple_repeat Simple_repeat 1 72 0 396 259 35 94 chr21 9506201 9506371 -25401199 + MIR SINE MIR 36 195 -67 214 171 29 43 chr21 9506846 9506916 -25400654 + T-rich Low_complexity Low_complexity 4 72 0 2182 90 7 3 chr21 9506992 9507291 -25400279 + AluSp SINE Alu 1 300 -13 26 0 0 0 chr21 9507466 9507492 -25400078 + AT_rich Low_complexity Low_complexity 1 26 0 30 45 0 0 chr21 9508087 9508131 -25399439 + AT_rich Low_complexity Low_complexity 1 44 0 2571 55 0 0 chr21 9508269 9508578 -25398992 + AluY SINE Alu 3 311 0 31 0 0 0 chr21 9508581 9508612 -25398958 + AT_rich Low_complexity Low_complexity 1 31 0 21 57 0 0 chr21 9509882 9509917 -25397653 + AT_rich Low_complexity Low_complexity 1 35 0 31 58 0 0 chr21 9510023 9510075 -25397495 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr21 9511896 9511917 -25395653 + AT_rich Low_complexity Low_complexity 1 21 0 2091 91 11 0 chr21 9512463 9512748 -25394822 - AluSq SINE Alu -8 305 18 186 43 0 0 chr21 9513275 9513298 -25394272 + (TG)n Simple_repeat Simple_repeat 2 24 0 1970 126 3 31 chr21 9513881 9514199 -25393371 - AluSx SINE Alu -3 309 1 23 68 0 0 chr21 9514247 9514291 -25393279 + AT_rich Low_complexity Low_complexity 1 44 0 30 77 0 0 chr21 9514961 9515026 -25392544 + AT_rich Low_complexity Low_complexity 1 65 0 28 0 0 0 chr21 9517708 9517736 -25389834 + AT_rich Low_complexity Low_complexity 1 28 0 596 222 84 49 chr21 9518095 9518298 -25389272 + MIR SINE MIR 15 224 -38 213 39 0 0 chr21 9518775 9518801 -25388769 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 343 285 103 24 chr21 9519092 9519257 -25388313 - L2 LINE L2 -444 2870 2693 1381 221 62 9 chr21 9521070 9521395 -25386175 + MER2 DNA MER2_type 2 343 -1 26 30 0 0 chr21 9521617 9521650 -25385920 + AT_rich Low_complexity Low_complexity 1 33 0 206 341 98 24 chr21 9522327 9522450 -25385120 - L2 LINE L2 -4 3268 3137 295 298 40 40 chr21 9522605 9522729 -25384841 - L2 LINE L2 -279 2993 2870 198 381 55 48 chr21 9522795 9523105 -25384465 - L2 LINE L2 -460 2854 2543 26 0 0 0 chr21 9523411 9523437 -25384133 + AT_rich Low_complexity Low_complexity 1 26 0 217 250 0 16 chr21 9523849 9523913 -25383657 + L2 LINE L2 2205 2267 -1047 462 298 62 5 chr21 9523927 9524135 -25383435 - MLT1J1 LTR MaLR -25 421 202 180 0 0 0 chr21 9524588 9524608 -25382962 + (CA)n Simple_repeat Simple_repeat 1 20 0 27 49 0 0 chr21 9525024 9525065 -25382505 + AT_rich Low_complexity Low_complexity 1 41 0 551 104 0 0 chr21 9525235 9525312 -25382258 + MADE1 DNA Mariner 4 80 0 349 362 29 43 chr21 9526663 9526939 -25380631 + MLT1I LTR MaLR 99 370 -39 192 40 0 0 chr21 9526994 9527019 -25380551 + (TC)n Simple_repeat Simple_repeat 2 26 0 454 0 16 32 chr21 9529738 9529801 -25377769 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 282 160 0 0 chr21 9530721 9530771 -25376799 + CT-rich Low_complexity Low_complexity 4 53 0 1259 193 70 30 chr21 9530963 9531294 -25376276 + MER2 DNA MER2_type 1 344 0 1273 253 3 6 chr21 9532182 9532530 -25375040 - L1P LINE L1 -783 5363 5017 3265 5 0 0 chr21 9532543 9532911 -25374659 - L1PA2 LINE L1 0 6155 5788 4293 10 0 0 chr21 9532911 9533401 -25374169 + L1PA2 LINE L1 5283 5772 -383 1044 222 50 11 chr21 9533400 9533661 -25373909 - L1P LINE L1 -1119 5027 4757 3852 162 33 4 chr21 9533660 9534389 -25373181 + L1PA16 LINE L1 5391 6166 0 2156 241 82 59 chr21 9534497 9536194 -25371376 - L1ME1 LINE L1 -230 6172 4427 2064 127 0 0 chr21 9536194 9536511 -25371059 + AluSx SINE Alu 1 317 0 2156 241 82 59 chr21 9536511 9536782 -25370788 - L1ME1 LINE L1 -1975 4427 4164 1446 241 25 14 chr21 9536786 9537271 -25370299 - L1ME1 LINE L1 -2878 3504 3015 1436 251 62 13 chr21 9537284 9537712 -25369858 - L1ME1 LINE L1 -3436 2946 2511 2857 116 19 9 chr21 9537712 9538177 -25369393 - L1MA1 LINE L1 0 6302 5833 1436 251 62 13 chr21 9538177 9538384 -25369186 - L1ME1 LINE L1 -3871 2511 2316 1628 246 52 74 chr21 9538569 9539204 -25368366 - MLT1E2 LTR MaLR -5 621 1 249 108 0 0 chr21 9539218 9539255 -25368315 + (CA)n Simple_repeat Simple_repeat 1 37 0 1015 303 34 26 chr21 9539316 9539870 -25367700 - L1ME1 LINE L1 -4551 1833 1295 2269 284 34 52 chr21 9539997 9541177 -25366393 - L1ME1 LINE L1 -5216 1347 190 30 27 0 0 chr21 9541349 9541386 -25366184 + AT_rich Low_complexity Low_complexity 1 37 0 624 291 27 9 chr21 9541846 9542066 -25365504 - L1ME1 LINE L1 -23 6143 5920 351 176 40 14 chr21 9542093 9542167 -25365403 + Tigger1 DNA MER2_type 1264 1339 -1079 272 285 65 23 chr21 9542168 9542382 -25365188 - L1MDa LINE L1 -1413 5127 4905 2355 75 0 3 chr21 9542494 9542799 -25364771 - AluY SINE Alu -7 304 1 853 288 57 48 chr21 9542799 9543472 -25364098 - L1MDa LINE L1 -1626 4914 4236 200 173 39 0 chr21 9543480 9543532 -25364038 + (TATAA)n Simple_repeat Simple_repeat 3 56 0 22 0 0 0 chr21 9543625 9543647 -25363923 + AT_rich Low_complexity Low_complexity 1 22 0 1604 285 49 37 chr21 9543698 9544457 -25363113 - L1MDa LINE L1 -2309 4231 3464 1014 260 57 3 chr21 9544470 9545003 -25362567 - L1MDa LINE L1 -3613 2927 2370 296 258 80 31 chr21 9545177 9545402 -25362168 - L1MDa LINE L1 -4365 2175 1940 228 235 35 35 chr21 9545773 9545858 -25361712 - L1M3de LINE L1 -4658 1995 1911 180 0 0 0 chr21 9545918 9545938 -25361632 + (TTG)n Simple_repeat Simple_repeat 2 21 0 360 216 202 32 chr21 9545986 9546204 -25361366 - L1MDa LINE L1 -5274 1266 1012 847 29 0 0 chr21 9547430 9547532 -25360038 - L1PA5 LINE L1 -4 6150 6049 2214 104 0 25 chr21 9547684 9548002 -25359568 - AluSx SINE Alu -2 310 1 489 224 75 0 chr21 9548058 9548219 -25359351 + LTR55 LTR ERV 74 246 -302 23 86 0 0 chr21 9548651 9548709 -25358861 + AT_rich Low_complexity Low_complexity 1 58 0 1438 201 29 7 chr21 9548709 9548988 -25358582 - AluJb SINE Alu -22 290 6 24 0 0 0 chr21 9549433 9549457 -25358113 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr21 9549665 9549710 -25357860 + AT_rich Low_complexity Low_complexity 1 45 0 739 139 0 23 chr21 9550171 9550300 -25357270 + FRAM SINE Alu 46 171 -5 2104 112 11 0 chr21 9550525 9550812 -25356758 + AluSg SINE Alu 7 296 -14 2261 194 23 5 chr21 9552305 9552883 -25354687 - L1P LINE L1 -743 5403 4833 4079 144 40 19 chr21 9552887 9553611 -25353959 + L1PA16 LINE L1 5407 6145 -21 533 77 13 0 chr21 9555281 9555359 -25352211 + L1PA5 LINE L1 6073 6151 -3 25 90 0 0 chr21 9556189 9556256 -25351314 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr21 9557822 9557843 -25349727 + AT_rich Low_complexity Low_complexity 1 21 0 482 137 0 0 chr21 9558230 9558303 -25349267 - AluSc SINE Alu -228 81 9 1271 85 0 0 chr21 9558322 9558486 -25349084 + AluSc SINE Alu 140 303 -6 258 45 296 0 chr21 9558639 9558683 -25348887 - L1PA16 LINE L1 -9 6157 6101 398 240 60 20 chr21 9558683 9558783 -25348787 + L1MB8 LINE L1 5947 6050 -128 610 196 65 46 chr21 9558827 9558980 -25348590 - MLT1B LTR MaLR -234 156 1 25 31 0 0 chr21 9559167 9559199 -25348371 + AT_rich Low_complexity Low_complexity 1 32 0 1317 273 69 37 chr21 9559207 9559231 -25348339 - L1MEc LINE L1 -2338 3877 3855 5649 151 76 26 chr21 9559231 9560110 -25347460 + Tigger3b DNA MER2_type 1 955 -2073 2073 110 28 0 chr21 9560110 9560401 -25347169 - AluSx SINE Alu -12 300 2 5649 151 76 26 chr21 9560401 9560693 -25346877 + Tigger3b DNA MER2_type 955 1231 0 1317 273 69 37 chr21 9560693 9561405 -25346165 - L1MEc LINE L1 -2360 3855 3117 434 230 10 0 chr21 9561803 9561903 -25345667 - L1MEc LINE L1 -3603 2612 2512 521 260 81 12 chr21 9562039 9562297 -25345273 - L1MEc LINE L1 -5263 1133 858 1347 215 31 3 chr21 9562303 9562591 -25344979 - AluJb SINE Alu -14 298 3 352 65 0 32 chr21 9562673 9562735 -25344835 + (TA)n Simple_repeat Simple_repeat 1 60 0 1726 143 14 7 chr21 9562762 9563042 -25344528 - AluSx SINE Alu -30 282 1 1948 136 0 23 chr21 9563054 9563363 -25344207 - AluSg SINE Alu -8 302 1 1516 290 32 19 chr21 9563366 9563959 -25343611 - L1MEc LINE L1 -5580 816 216 1605 127 104 15 chr21 9565120 9565388 -25342182 - AluSx SINE Alu -20 292 1 26 74 0 0 chr21 9565611 9565665 -25341905 + AT_rich Low_complexity Low_complexity 1 54 0 257 171 0 0 chr21 9565906 9565947 -25341623 - MER112 DNA MER1_type -215 45 5 24 0 0 0 chr21 9566276 9566300 -25341270 + AT_rich Low_complexity Low_complexity 1 24 0 1316 47 23 0 chr21 9567556 9567728 -25339842 + L1PA4 LINE L1 5978 6153 -2 21 36 0 0 chr21 9567927 9567955 -25339615 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 9568836 9568865 -25338705 + AT_rich Low_complexity Low_complexity 1 29 0 253 360 0 0 chr21 9569105 9569194 -25338376 + (TA)n Simple_repeat Simple_repeat 1 89 0 233 274 48 16 chr21 9571901 9571963 -25335607 + MIR SINE MIR 13 76 -186 190 302 0 0 chr21 9572408 9572461 -25335109 + MER5A DNA MER1_type 36 88 -101 855 264 45 106 chr21 9573372 9573959 -25333611 - MLT1G1 LTR MaLR -13 529 16 551 281 18 12 chr21 9573969 9574136 -25333434 - MIR SINE MIR -73 189 22 8599 163 43 2 chr21 9574425 9574509 -25333061 + L1MA1 LINE L1 15 94 -7471 366 23 0 0 chr21 9574509 9574552 -25333018 + (CA)n Simple_repeat Simple_repeat 2 44 0 8599 163 43 2 chr21 9574552 9576975 -25330595 + L1MA1 LINE L1 94 2691 -4874 341 82 0 0 chr21 9577019 9577068 -25330502 + L1MA1 LINE L1 2672 2720 -4845 13561 157 34 34 chr21 9577063 9581372 -25326198 + L1MA1 LINE L1 3413 7721 0 27 0 0 0 chr21 9581372 9581399 -25326171 + AT_rich Low_complexity Low_complexity 1 27 0 2122 62 9 100 chr21 9581962 9582303 -25325267 + AluY SINE Alu 1 310 -1 21 71 0 0 chr21 9582707 9582749 -25324821 + AT_rich Low_complexity Low_complexity 1 42 0 239 0 0 31 chr21 9582890 9582922 -25324648 + (TTTTG)n Simple_repeat Simple_repeat 4 34 0 1663 145 0 15 chr21 9582922 9583186 -25324384 - AluSx SINE Alu -32 280 21 1360 172 6 114 chr21 9583226 9583435 -25324135 - AluJb SINE Alu -5 297 136 180 0 0 0 chr21 9583435 9583455 -25324115 + (TGG)n Simple_repeat Simple_repeat 1 20 0 1360 172 6 114 chr21 9583455 9583577 -25323993 - AluJb SINE Alu -166 136 2 323 262 83 35 chr21 9583695 9583840 -25323730 + MIR SINE MIR 54 205 -57 306 129 14 14 chr21 9583901 9583971 -25323599 + L1PA6 LINE L1 6080 6149 -5 22 0 0 0 chr21 9583977 9583999 -25323571 + AT_rich Low_complexity Low_complexity 1 22 0 1494 118 0 35 chr21 9584006 9584234 -25323336 - AluSg/x SINE Alu -8 302 83 1688 137 0 99 chr21 9586310 9586653 -25320917 + AluSx SINE Alu 3 311 -1 404 135 14 0 chr21 9586664 9586738 -25320832 + GA-rich Low_complexity Low_complexity 4 78 0 1988 101 25 0 chr21 9586760 9587065 -25320505 - AluSx SINE Alu 0 312 1 27 0 0 0 chr21 9587520 9587547 -25320023 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr21 9587688 9587711 -25319859 + AT_rich Low_complexity Low_complexity 1 23 0 2064 93 7 0 chr21 9587866 9588144 -25319426 + AluSp SINE Alu 2 281 -32 351 0 0 0 chr21 9588144 9588183 -25319387 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 24 53 0 0 chr21 9589000 9589038 -25318532 + AT_rich Low_complexity Low_complexity 1 38 0 218 200 20 0 chr21 9589619 9589669 -25317901 + (CA)n Simple_repeat Simple_repeat 1 51 0 23 68 0 0 chr21 9591128 9591172 -25316398 + AT_rich Low_complexity Low_complexity 1 44 0 1051 338 43 18 chr21 9591717 9592223 -25315347 + L2 LINE L2 950 1468 -1846 189 74 0 0 chr21 9592384 9592411 -25315159 + (CA)n Simple_repeat Simple_repeat 2 28 0 1608 288 130 34 chr21 9592444 9593052 -25314518 + L2 LINE L2 1814 2508 -806 429 220 0 0 chr21 9593052 9593143 -25314427 - L1PA15 LINE L1 -7 6158 6068 1608 288 130 34 chr21 9593143 9593278 -25314292 + L2 LINE L2 2508 2629 -685 346 143 36 0 chr21 9593284 9593340 -25314230 - MER57B LTR ERV1 -195 239 182 293 345 84 0 chr21 9593350 9593469 -25314101 + L2 LINE L2 2642 2770 -544 923 152 12 30 chr21 9593549 9593714 -25313856 - FRAM SINE Alu -15 161 1 411 211 0 0 chr21 9595750 9595845 -25311725 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 321 26 0 0 chr21 9596391 9596429 -25311141 + (TG)n Simple_repeat Simple_repeat 2 39 0 1138 275 35 33 chr21 9596476 9597022 -25310548 + L1MEc LINE L1 606 1152 -5244 393 154 66 55 chr21 9597037 9597128 -25310442 - L1P5 LINE L1 -495 5659 5568 280 228 0 0 chr21 9597897 9597954 -25309616 - L1MC5 LINE L1 -74 7887 7831 568 179 0 0 chr21 9598398 9598504 -25309066 - L1PB4 LINE L1 -8 6148 6043 589 367 22 0 chr21 9598833 9599062 -25308508 - MIR SINE MIR -26 236 3 22 0 0 0 chr21 9599168 9599190 -25308380 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr21 9599217 9599258 -25308312 + AT_rich Low_complexity Low_complexity 1 41 0 247 344 82 28 chr21 9599427 9599606 -25307964 + L2 LINE L2 2461 2662 -652 1774 174 28 25 chr21 9599606 9599968 -25307602 - MLT1A1 LTR MaLR -2 363 1 247 344 82 28 chr21 9599968 9600070 -25307500 + L2 LINE L2 2662 2757 -557 2818 209 71 32 chr21 9600112 9600889 -25306681 - L1MB8 LINE L1 -2 6176 5370 544 283 94 16 chr21 9601827 9602018 -25305552 + MIR SINE MIR 23 228 -34 22 0 0 0 chr21 9602081 9602103 -25305467 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr21 9603022 9603049 -25304521 + (CA)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr21 9605689 9605711 -25301859 + AT_rich Low_complexity Low_complexity 1 22 0 1411 41 0 0 chr21 9606150 9606321 -25301249 + L1PA3 LINE L1 5983 6153 -2 237 33 0 0 chr21 9606351 9606381 -25301189 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 30 77 0 0 chr21 9606807 9606872 -25300698 + AT_rich Low_complexity Low_complexity 1 65 0 482 296 43 31 chr21 9608324 9608581 -25298989 - L1ME1 LINE L1 -6 6094 5835 374 78 0 16 chr21 9608625 9608689 -25298881 - L1MA9 LINE L1 -10 6302 6240 4453 184 41 17 chr21 9608708 9609774 -25297796 - L1MA7 LINE L1 -2 6289 5198 436 291 58 5 chr21 9609811 9610000 -25297570 - L1ME1 LINE L1 -328 5772 5574 1306 271 51 9 chr21 9610302 9610874 -25296696 - L1ME1 LINE L1 -2884 3196 2601 2998 115 22 2 chr21 9610917 9611361 -25296209 - MLT2A2 LTR ERVL 0 453 1 263 272 136 0 chr21 9611420 9611523 -25296047 - L1ME1 LINE L1 -3591 2489 2373 1265 229 49 46 chr21 9611530 9611941 -25295629 - MLT1D LTR MaLR 0 505 94 595 268 66 16 chr21 9612029 9612272 -25295298 - L1ME1 LINE L1 -3731 2349 2095 219 69 0 0 chr21 9612644 9612673 -25294897 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 627 294 45 59 chr21 9612950 9613665 -25293905 - L1ME1 LINE L1 -4473 1607 895 2050 109 0 51 chr21 9613665 9613977 -25293593 - AluSg SINE Alu -14 296 1 627 294 45 59 chr21 9613977 9614313 -25293257 - L1ME1 LINE L1 -5185 895 556 321 333 109 6 chr21 9614383 9614539 -25293031 - L1ME1 LINE L1 -5578 492 321 29 28 0 0 chr21 9614945 9614981 -25292589 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr21 9615407 9615441 -25292129 + AT_rich Low_complexity Low_complexity 1 34 0 417 39 0 0 chr21 9616519 9616570 -25291000 + (CA)n Simple_repeat Simple_repeat 2 52 0 23 33 0 0 chr21 9616984 9617014 -25290556 + AT_rich Low_complexity Low_complexity 1 30 0 793 222 24 12 chr21 9618303 9618323 -25289247 - MLT1A2 LTR MaLR -212 162 144 411 21 0 0 chr21 9618323 9618371 -25289199 + (CA)n Simple_repeat Simple_repeat 1 48 0 793 222 24 12 chr21 9618371 9618541 -25289029 - MLT1A2 LTR MaLR -230 144 9 422 329 35 31 chr21 9619472 9619700 -25287870 - L2 LINE L2 -281 3032 2804 1064 200 0 9 chr21 9619826 9620046 -25287524 + Charlie5 DNA MER1_type 2234 2451 -161 2850 168 37 18 chr21 9620072 9620219 -25287351 - L1MA4 LINE L1 -1 6299 6156 2293 138 6 6 chr21 9620219 9620581 -25286989 - THE1B LTR MaLR 0 364 3 2850 168 37 18 chr21 9620581 9621006 -25286564 - L1MA4 LINE L1 -144 6156 5716 2061 102 0 0 chr21 9621014 9621289 -25286281 - AluSc SINE Alu -29 280 6 488 250 6 61 chr21 9621501 9621665 -25285905 - L2 LINE L2 -544 2770 2616 609 235 0 0 chr21 9622218 9622333 -25285237 + FLAM_A SINE Alu 1 115 -18 213 94 0 0 chr21 9622336 9622368 -25285202 + (TAA)n Simple_repeat Simple_repeat 1 32 0 6213 85 11 1 chr21 9623099 9624503 -25283067 - L1PA13 LINE L1 -19 6144 4743 2319 50 4 0 chr21 9625623 9625904 -25281666 - AluY SINE Alu 0 311 30 1921 135 3 35 chr21 9626196 9626507 -25281063 + AluSx SINE Alu 1 301 -11 3483 188 22 1 chr21 9626579 9627569 -25280001 + L1P5 LINE L1 4553 5559 -592 3508 186 60 34 chr21 9627573 9628909 -25278661 - MER52A LTR ERV1 0 1755 204 3650 112 52 0 chr21 9629004 9629567 -25278003 + L1PB1 LINE L1 5559 6150 -1 1080 279 43 30 chr21 9629988 9630357 -25277213 - MER87 LTR ERV1 0 541 168 27 29 0 0 chr21 9630709 9630743 -25276827 + AT_rich Low_complexity Low_complexity 1 34 0 901 126 74 0 chr21 9631740 9631875 -25275695 - AluSg/x SINE Alu -14 296 152 2849 194 79 9 chr21 9632350 9632983 -25274587 - L1MA7 LINE L1 -5 6286 5610 4361 75 33 4 chr21 9632983 9633985 -25273585 + MER11A LTR ERVK 1 1266 0 1568 185 28 6 chr21 9633985 9634309 -25273261 - L1MA7 LINE L1 -697 5615 5285 281 189 0 14 chr21 9635399 9635417 -25272153 + (TATATG)n Simple_repeat Simple_repeat 2 19 -55 1679 143 110 33 chr21 9635417 9635753 -25271817 + THE1B LTR MaLR 3 364 0 281 189 0 14 chr21 9635753 9635808 -25271762 + (TATATG)n Simple_repeat Simple_repeat 19 74 0 440 319 6 0 chr21 9635812 9635978 -25271592 + (TA)n Simple_repeat Simple_repeat 2 168 0 21 36 0 0 chr21 9636077 9636105 -25271465 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr21 9636622 9636652 -25270918 + AT_rich Low_complexity Low_complexity 1 30 0 1628 181 60 77 chr21 9637236 9637701 -25269869 - MER31B LTR ERV1 -9 457 1 28 29 0 0 chr21 9639563 9639598 -25267972 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr21 9639891 9639926 -25267644 + AT_rich Low_complexity Low_complexity 1 35 0 2234 65 0 71 chr21 9640971 9641293 -25266277 + AluY SINE Alu 1 299 -12 2305 90 0 0 chr21 9641869 9642159 -25265411 + AluSc SINE Alu 1 290 -19 313 219 0 0 chr21 9642162 9642226 -25265344 + L1MC4 LINE L1 6640 6703 -1339 381 233 5 34 chr21 9642184 9642302 -25265268 - L1MC4 LINE L1 -1339 6703 6614 22 70 0 0 chr21 9642584 9642627 -25264943 + AT_rich Low_complexity Low_complexity 1 43 0 1347 236 39 32 chr21 9643193 9643572 -25263998 - MLT1B LTR MaLR -5 366 4 12958 147 19 38 chr21 9644640 9645601 -25261969 - Tigger1 DNA MER2_type 0 2418 1440 2320 74 3 0 chr21 9645601 9645910 -25261660 - AluY SINE Alu -1 310 1 12958 147 19 38 chr21 9645910 9646472 -25261098 - Tigger1 DNA MER2_type -978 1440 869 2475 49 10 0 chr21 9646472 9646776 -25260794 - AluY SINE Alu -4 307 1 12958 147 19 38 chr21 9646776 9647715 -25259855 - Tigger1 DNA MER2_type -1549 869 2 267 157 0 0 chr21 9649226 9649277 -25258293 + (TA)n Simple_repeat Simple_repeat 2 52 0 1491 251 13 0 chr21 9649784 9650162 -25257408 + L1MA4 LINE L1 5912 6294 -6 189 0 0 0 chr21 9650446 9650467 -25257103 + (T)n Simple_repeat Simple_repeat 1 21 0 5678 35 0 0 chr21 9650501 9651179 -25256391 - L1PA4 LINE L1 -1 6154 5477 23 33 0 0 chr21 9651689 9651719 -25255851 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr21 9652124 9652156 -25255414 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr21 9652811 9652838 -25254732 + AT_rich Low_complexity Low_complexity 1 27 0 1427 183 76 3 chr21 9653295 9653601 -25253969 + L1PB4 LINE L1 5840 6151 -3 28 71 0 0 chr21 9654152 9654208 -25253362 + AT_rich Low_complexity Low_complexity 1 56 0 628 318 144 11 chr21 9654554 9654909 -25252661 - L3 LINE CR1 -426 1151 750 2216 110 0 22 chr21 9655890 9656208 -25251362 + AluSq SINE Alu 2 312 -1 463 134 0 12 chr21 9656328 9656410 -25251160 + L1PA6 LINE L1 6069 6149 -5 1210 247 51 20 chr21 9657000 9657352 -25250218 - MLT1A1 LTR MaLR -2 363 1 995 142 23 5 chr21 9658590 9658808 -25248762 + L1MA9 LINE L1 5700 6075 -237 266 332 80 32 chr21 9659068 9659255 -25248315 - MIR SINE MIR -66 196 1 205 169 68 51 chr21 9660008 9660067 -25247503 - MIR SINE MIR -7 255 196 1768 176 7 3 chr21 9661159 9661466 -25246104 - AluSx SINE Alu -4 308 1 1736 127 24 115 chr21 9661538 9661905 -25245665 - THE1C LTR MaLR 0 375 47 2325 88 0 7 chr21 9661905 9662211 -25245359 + AluSc SINE Alu 1 304 -5 1736 127 24 115 chr21 9662211 9662253 -25245317 - THE1C LTR MaLR -328 47 3 210 37 0 0 chr21 9662259 9662286 -25245284 + (TG)n Simple_repeat Simple_repeat 2 28 0 36 77 0 0 chr21 9663844 9663922 -25243648 + AT_rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr21 9664509 9664531 -25243039 + AT_rich Low_complexity Low_complexity 1 22 0 2145 88 0 14 chr21 9664597 9664945 -25242625 + AluY SINE Alu 1 344 0 210 200 14 43 chr21 9667605 9667675 -25239895 + (TTATA)n Simple_repeat Simple_repeat 1 68 0 1898 140 6 41 chr21 9667899 9668214 -25239356 - AluSx SINE Alu -8 304 1 201 74 0 0 chr21 9668348 9668375 -25239195 + (TTG)n Simple_repeat Simple_repeat 2 28 0 243 0 0 0 chr21 9668614 9668641 -25238929 + (TG)n Simple_repeat Simple_repeat 2 28 0 236 327 49 86 chr21 9668641 9669026 -25238544 - L1MEd LINE L1 -5738 381 11 21 0 0 0 chr21 9669048 9669069 -25238501 + AT_rich Low_complexity Low_complexity 1 21 0 1369 218 19 29 chr21 9669940 9670247 -25237323 + AluJo SINE Alu 1 304 -8 2175 85 0 36 chr21 9670262 9670568 -25237002 - AluSx SINE Alu -17 295 1 613 235 50 0 chr21 9671300 9671479 -25236091 - L1MD3 LINE L1 -3 7992 7805 1605 172 6 28 chr21 9671539 9671859 -25235711 + AluSq SINE Alu 1 313 0 761 344 80 17 chr21 9672569 9673031 -25234539 - L2 LINE L2 -4 3309 2819 293 291 94 73 chr21 9673202 9673635 -25233935 - L2 LINE L2 -504 2810 2361 412 289 102 24 chr21 9673673 9673839 -25233731 - L2 LINE L2 -1003 2311 2133 764 60 0 0 chr21 9674124 9674224 -25233346 - L1P LINE L1 -3106 3040 2941 2657 53 3 3 chr21 9674226 9674565 -25233005 + L1PA6 LINE L1 5803 6141 -13 15386 141 11 6 chr21 9675050 9677646 -25229924 - L1PA8 LINE L1 -2065 4081 1473 8053 117 9 1 chr21 9677645 9679682 -25227888 + L1PA8 LINE L1 4095 6190 0 22 56 0 0 chr21 9680697 9680733 -25226837 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr21 9681041 9681069 -25226501 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr21 9681306 9681334 -25226236 + AT_rich Low_complexity Low_complexity 1 28 0 233 163 20 0 chr21 9681364 9681413 -25226157 + (TA)n Simple_repeat Simple_repeat 1 50 0 252 59 0 0 chr21 9681426 9681460 -25226110 + (TG)n Simple_repeat Simple_repeat 1 34 0 1478 153 71 19 chr21 9681501 9681769 -25225801 - AluJo SINE Alu -30 282 1 198 0 0 0 chr21 9681911 9681933 -25225637 + (TATG)n Simple_repeat Simple_repeat 2 23 0 369 0 0 0 chr21 9681933 9681974 -25225596 + (CA)n Simple_repeat Simple_repeat 2 42 0 281 270 10 0 chr21 9683309 9683409 -25224161 + (CATA)n Simple_repeat Simple_repeat 4 104 0 271 265 68 83 chr21 9683463 9683595 -25223975 - L2 LINE L2 0 3313 3184 37 23 0 0 chr21 9683621 9683665 -25223905 + AT_rich Low_complexity Low_complexity 1 44 0 486 89 71 18 chr21 9683665 9683833 -25223737 + (TA)n Simple_repeat Simple_repeat 2 178 0 24 0 0 0 chr21 9683834 9683858 -25223712 + AT_rich Low_complexity Low_complexity 1 24 0 180 150 53 35 chr21 9683864 9683977 -25223593 + (TATAA)n Simple_repeat Simple_repeat 5 119 0 32 0 0 0 chr21 9684020 9684052 -25223518 + AT_rich Low_complexity Low_complexity 1 32 0 437 64 96 6 chr21 9684055 9684211 -25223359 + (TA)n Simple_repeat Simple_repeat 1 170 0 227 145 48 36 chr21 9684214 9684297 -25223273 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 316 291 99 33 chr21 9684318 9684500 -25223070 - L2 LINE L2 -168 3145 2952 212 258 61 15 chr21 9685315 9685381 -25222189 - L2 LINE L2 -5 3267 3199 198 0 0 0 chr21 9686350 9686372 -25221198 + (A)n Simple_repeat Simple_repeat 1 22 0 26 30 0 0 chr21 9686854 9686887 -25220683 + AT_rich Low_complexity Low_complexity 1 33 0 476 153 0 0 chr21 9687713 9687798 -25219772 + L1MA9 LINE L1 4964 5048 -1098 1489 248 34 0 chr21 9687801 9688152 -25219418 + MLT1A1 LTR MaLR 3 365 0 2922 232 38 47 chr21 9688152 9688499 -25219071 + MLT1A1-int LTR MaLR 1 349 -1386 2145 125 0 0 chr21 9688499 9688795 -25218775 + AluSg SINE Alu 1 296 -14 2922 232 38 47 chr21 9688795 9689282 -25218288 + MLT1A1-int LTR MaLR 349 828 -907 1337 200 21 14 chr21 9689604 9689889 -25217681 + MLT1A1 LTR MaLR 79 365 0 2068 223 28 52 chr21 9689890 9690982 -25216588 + L1MA9 LINE L1 5046 6106 -206 821 175 44 31 chr21 9691020 9691249 -25216321 + L1MA9 LINE L1 6081 6312 0 346 129 0 32 chr21 9695622 9695684 -25211886 + FLAM SINE Alu 73 132 -1 23 33 0 0 chr21 9696333 9696363 -25211207 + AT_rich Low_complexity Low_complexity 1 30 0 680 196 8 0 chr21 9696445 9696578 -25210992 + FLAM_C SINE Alu 1 134 -9 32 43 0 0 chr21 9696689 9696735 -25210835 + AT_rich Low_complexity Low_complexity 1 46 0 192 77 0 0 chr21 9697717 9697743 -25209827 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 339 149 0 0 chr21 9698514 9698588 -25208982 + (TA)n Simple_repeat Simple_repeat 2 75 0 1558 195 0 49 chr21 9698708 9699036 -25208534 + AluJb SINE Alu 1 312 0 28 71 0 0 chr21 9700899 9700955 -25206615 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr21 9702647 9702668 -25204902 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr21 9703786 9703822 -25203748 + AT_rich Low_complexity Low_complexity 1 36 0 390 42 0 0 chr21 9704112 9704160 -25203410 + (CA)n Simple_repeat Simple_repeat 2 49 0 369 158 30 0 chr21 9704445 9704546 -25203024 + (TA)n Simple_repeat Simple_repeat 1 104 0 285 241 21 55 chr21 9705918 9706063 -25201507 + (TATATG)n Simple_repeat Simple_repeat 5 144 0 273 115 77 0 chr21 9706123 9706201 -25201369 + (TA)n Simple_repeat Simple_repeat 1 84 0 222 338 60 30 chr21 9706491 9706624 -25200946 + L2 LINE L2 3133 3269 -3 25 31 0 0 chr21 9710296 9710328 -25197242 + AT_rich Low_complexity Low_complexity 1 32 0 2426 59 0 3 chr21 9710446 9710753 -25196817 + AluY SINE Alu 1 306 -5 2510 46 0 3 chr21 9711229 9711535 -25196035 + AluY SINE Alu 1 305 -6 216 360 111 29 chr21 9711591 9711897 -25195673 - L2 LINE L2 -339 2975 2645 207 326 22 11 chr21 9712275 9712364 -25195206 + L2 LINE L2 3223 3312 -1 305 239 65 0 chr21 9712474 9712566 -25195004 - L2 LINE L2 -1266 2048 1951 2068 115 14 0 chr21 9712966 9713254 -25194316 + AluSg SINE Alu 1 292 -18 28 61 0 0 chr21 9713466 9713515 -25194055 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr21 9713611 9713632 -25193938 + AT_rich Low_complexity Low_complexity 1 21 0 36 53 0 0 chr21 9713880 9713937 -25193633 + AT_rich Low_complexity Low_complexity 1 57 0 21 0 0 0 chr21 9715782 9715803 -25191767 + AT_rich Low_complexity Low_complexity 1 21 0 2625 33 0 3 chr21 9717167 9717474 -25190096 + AluY SINE Alu 1 306 -5 23 0 0 0 chr21 9719421 9719444 -25188126 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr21 9719624 9719650 -25187920 + AT_rich Low_complexity Low_complexity 1 26 0 1774 149 3 16 chr21 9720095 9720440 -25187130 - AluSx SINE Alu 0 341 1 329 214 10 0 chr21 9720514 9720612 -25186958 + CT-rich Low_complexity Low_complexity 2 100 0 22 0 0 0 chr21 9721699 9721721 -25185849 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr21 9722676 9722698 -25184872 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr21 9723171 9723202 -25184368 + AT_rich Low_complexity Low_complexity 1 31 0 28 0 0 0 chr21 9723759 9723787 -25183783 + AT_rich Low_complexity Low_complexity 1 28 0 2312 214 4 16 chr21 9724521 9725035 -25182535 - L1MC1 LINE L1 -1 6332 5825 32 0 0 0 chr21 9725963 9725995 -25181575 + AT_rich Low_complexity Low_complexity 1 32 0 204 125 36 18 chr21 9727125 9727181 -25180389 + (TA)n Simple_repeat Simple_repeat 2 58 0 2655 195 26 3 chr21 9727215 9728088 -25179482 - L1P4 LINE L1 -464 5702 4808 2026 161 57 10 chr21 9728098 9728501 -25179069 + L1PA16 LINE L1 5736 6157 -9 26 74 0 0 chr21 9729389 9729443 -25178127 + AT_rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr21 9730260 9730283 -25177287 + AT_rich Low_complexity Low_complexity 1 23 0 2101 102 20 3 chr21 9730391 9730685 -25176885 - AluSc SINE Alu -10 299 1 25 0 0 0 chr21 9732129 9732154 -25175416 + AT_rich Low_complexity Low_complexity 1 25 0 2326 216 43 4 chr21 9734252 9734781 -25172789 - MER44D DNA MER2_type 0 605 1 26 82 0 0 chr21 9734961 9735022 -25172548 + AT_rich Low_complexity Low_complexity 1 61 0 297 301 58 39 chr21 9735382 9735485 -25172085 + MIR SINE MIR 82 186 -76 1318 123 41 8 chr21 9735936 9736179 -25171391 - L1MA2 LINE L1 0 6304 6054 689 243 9 46 chr21 9736375 9736593 -25170977 + MLT1A2 LTR MaLR 119 328 -46 34 42 0 0 chr21 9736879 9736927 -25170643 + AT_rich Low_complexity Low_complexity 1 48 0 22 88 0 0 chr21 9738215 9738272 -25169298 + AT_rich Low_complexity Low_complexity 1 57 0 2254 81 14 7 chr21 9738655 9738951 -25168619 + AluSc SINE Alu 1 298 -11 336 83 0 0 chr21 9739943 9739991 -25167579 + (T)n Simple_repeat Simple_repeat 1 48 0 752 251 61 42 chr21 9741349 9741679 -25165891 - L1ME2 LINE L1 -25 6139 5804 361 280 120 22 chr21 9741931 9742156 -25165414 - L1ME2 LINE L1 -9 6155 5909 6054 191 35 18 chr21 9742161 9744355 -25163215 - L1MA4 LINE L1 -43 6257 4023 2702 240 17 11 chr21 9744354 9745113 -25162457 - L1MA4 LINE L1 -3012 3134 2371 213 231 8 51 chr21 9745219 9745336 -25162234 + (CATATA)n Simple_repeat Simple_repeat 3 114 0 1883 103 42 0 chr21 9745378 9745640 -25161930 + AluSq SINE Alu 41 313 0 24 0 0 0 chr21 9746133 9746157 -25161413 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 9746634 9746665 -25160905 + AT_rich Low_complexity Low_complexity 1 31 0 227 86 0 0 chr21 9747302 9747337 -25160233 - L1ME2 LINE L1 -253 5911 5877 25 51 0 0 chr21 9747495 9747534 -25160036 + AT_rich Low_complexity Low_complexity 1 39 0 1903 132 54 0 chr21 9748720 9749015 -25158555 + AluSx SINE Alu 1 311 -1 263 273 67 87 chr21 9749119 9749269 -25158301 + MIR SINE MIR 90 236 -26 21 0 0 0 chr21 9749749 9749770 -25157800 + AT_rich Low_complexity Low_complexity 1 21 0 372 328 31 31 chr21 9749858 9750050 -25157520 - L2 LINE L2 -3 3310 3119 588 349 87 30 chr21 9750155 9750685 -25156885 - L2 LINE L2 -338 2976 2417 25 0 0 0 chr21 9751285 9751310 -25156260 + AT_rich Low_complexity Low_complexity 1 25 0 37 62 0 0 chr21 9751412 9751477 -25156093 + AT_rich Low_complexity Low_complexity 1 65 0 5729 194 64 58 chr21 9751697 9753140 -25154430 + L1MCa LINE L1 7 1459 -4967 330 198 11 28 chr21 9753144 9753326 -25154244 + (TA)n Simple_repeat Simple_repeat 2 180 0 181 181 0 28 chr21 9753388 9753460 -25154110 + (TA)n Simple_repeat Simple_repeat 2 71 0 777 179 17 105 chr21 9753490 9753765 -25153805 + L1MCa LINE L1 1480 1820 -4606 1931 139 20 3 chr21 9753765 9754068 -25153502 - AluSg SINE Alu -2 308 1 777 179 17 105 chr21 9754068 9754123 -25153447 + L1MCa LINE L1 1820 1878 -4548 2040 199 9 14 chr21 9754179 9754616 -25152954 - L1 LINE L1 -836 5310 4876 1515 227 76 33 chr21 9754617 9755183 -25152387 + L1MCa LINE L1 1981 2574 -4033 198 0 0 0 chr21 9755183 9755205 -25152365 + (CA)n Simple_repeat Simple_repeat 1 22 0 1515 227 76 33 chr21 9755205 9755330 -25152240 + L1MCa LINE L1 2574 2692 -3915 549 290 42 14 chr21 9755374 9755588 -25151982 + L1MCa LINE L1 2668 2887 -3539 593 130 0 0 chr21 9755592 9755684 -25151886 + AluSp/q SINE Alu 201 292 -21 3867 263 28 15 chr21 9755818 9756116 -25151454 + L1MCa LINE L1 2926 4240 -2186 6885 230 38 19 chr21 9756116 9758258 -25149312 + L1MC1 LINE L1 2948 5178 -1155 1887 84 0 4 chr21 9758258 9758496 -25149074 - AluSg SINE Alu -14 296 60 6885 230 38 19 chr21 9758496 9759668 -25147902 + L1MC1 LINE L1 5178 6326 -7 25 0 0 0 chr21 9760987 9761012 -25146558 + AT_rich Low_complexity Low_complexity 1 25 0 47 19 0 0 chr21 9761174 9761228 -25146342 + AT_rich Low_complexity Low_complexity 1 54 0 820 159 0 16 chr21 9761228 9761538 -25146032 + (TTTAA)n Simple_repeat Simple_repeat 1 304 0 257 229 14 14 chr21 9761796 9761866 -25145704 - L1MC/D LINE L1 -1959 5849 5780 1742 48 4 57 chr21 9762904 9763152 -25144418 + AluY SINE Alu 62 296 -15 395 229 9 9 chr21 9763261 9763370 -25144200 + L1ME LINE L1 5711 5819 -302 28 29 0 0 chr21 9763525 9763560 -25144010 + AT_rich Low_complexity Low_complexity 1 35 0 26 0 0 0 chr21 9763639 9763665 -25143905 + AT_rich Low_complexity Low_complexity 1 26 0 321 314 85 20 chr21 9763939 9764092 -25143478 - MER104 DNA MER2_type -387 1508 1346 1155 247 70 38 chr21 9764354 9764771 -25142799 - L1MC2 LINE L1 -251 6093 5664 35 63 0 0 chr21 9765240 9765303 -25142267 + AT_rich Low_complexity Low_complexity 1 63 0 21 0 0 0 chr21 9765877 9765898 -25141672 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr21 9766525 9766573 -25140997 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr21 9767423 9767451 -25140119 + AT_rich Low_complexity Low_complexity 1 28 0 2153 102 10 0 chr21 9767530 9767834 -25139736 - AluSp SINE Alu -6 307 1 189 0 0 0 chr21 9768221 9768242 -25139328 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 659 110 11 0 chr21 9768258 9768349 -25139221 - AluSx SINE Alu -27 282 191 996 121 0 0 chr21 9768350 9768491 -25139079 - AluSx SINE Alu -172 141 1 28 48 0 0 chr21 9768776 9768818 -25138752 + AT_rich Low_complexity Low_complexity 1 42 0 246 62 0 0 chr21 9769269 9769301 -25138269 + (TTG)n Simple_repeat Simple_repeat 2 33 0 26 64 0 0 chr21 9769935 9769982 -25137588 + AT_rich Low_complexity Low_complexity 1 47 0 233 106 0 43 chr21 9771030 9771077 -25136493 + (TTTTG)n Simple_repeat Simple_repeat 5 49 0 363 96 0 0 chr21 9771399 9771451 -25136119 + (TA)n Simple_repeat Simple_repeat 2 53 0 21 36 0 0 chr21 9772060 9772088 -25135482 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr21 9772149 9772178 -25135392 + AT_rich Low_complexity Low_complexity 1 29 0 33 43 0 0 chr21 9772232 9772279 -25135291 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr21 9772748 9772769 -25134801 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr21 9773463 9773498 -25134072 + AT_rich Low_complexity Low_complexity 1 35 0 670 247 50 11 chr21 9774693 9774875 -25132695 + MER5A DNA MER1_type 1 189 0 30 0 0 0 chr21 9775707 9775737 -25131833 + AT_rich Low_complexity Low_complexity 1 30 0 28 79 0 0 chr21 9775879 9775942 -25131628 + AT_rich Low_complexity Low_complexity 1 63 0 321 368 20 49 chr21 9776601 9776848 -25130722 + MIR SINE MIR 19 258 -4 314 274 71 0 chr21 9777938 9778022 -25129548 + L1MC4 LINE L1 6613 6702 -1340 261 360 49 5 chr21 9778444 9778647 -25128923 - MLT1D-int LTR MaLR -870 501 290 1435 217 106 56 chr21 9778778 9779167 -25128403 - MLT1D LTR MaLR 0 505 86 198 0 0 0 chr21 9779176 9779198 -25128372 + (TGG)n Simple_repeat Simple_repeat 1 22 0 1903 166 0 3 chr21 9779198 9779501 -25128069 - AluSx SINE Alu -8 304 1 1435 217 106 56 chr21 9779501 9779591 -25127979 - MLT1D LTR MaLR -419 86 2 5625 229 21 2 chr21 9779776 9780922 -25126648 - ERVL LTR ERVL -2366 3398 2231 1723 259 22 14 chr21 9780896 9781458 -25126112 - ERVL LTR ERVL -5089 586 2 23 54 0 0 chr21 9781609 9781646 -25125924 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr21 9781771 9781795 -25125775 + AT_rich Low_complexity Low_complexity 1 24 0 1069 293 17 10 chr21 9782259 9782662 -25124908 - L1M4 LINE L1 -3413 2733 2328 701 268 34 48 chr21 9782677 9782787 -25124783 + L1ME1 LINE L1 5812 5922 -244 338 42 21 0 chr21 9782787 9782835 -25124735 + (CA)n Simple_repeat Simple_repeat 2 50 0 701 268 34 48 chr21 9782835 9783079 -25124491 + L1ME1 LINE L1 5922 6161 -5 1604 195 129 8 chr21 9783623 9784003 -25123567 + MSTB LTR MaLR 1 426 0 1481 188 16 2 chr21 9784188 9784618 -25122952 - L1PA16 LINE L1 -3 6866 6402 1772 209 52 11 chr21 9784687 9785055 -25122515 + MSTB LTR MaLR 1 383 -43 324 155 56 0 chr21 9785079 9785150 -25122420 + MSTB LTR MaLR 352 426 0 13248 239 19 25 chr21 9785153 9788028 -25119542 - L1PA16 LINE L1 -500 6368 3516 2006 147 0 3 chr21 9788028 9788328 -25119242 - AluSg1 SINE Alu -10 299 1 13248 239 19 25 chr21 9788328 9790159 -25117411 - L1PA16 LINE L1 -3352 3516 1676 2021 149 6 12 chr21 9790221 9790549 -25117021 + THE1B LTR MaLR 1 326 -38 229 0 185 0 chr21 9790552 9790633 -25116937 + (TTAA)n Simple_repeat Simple_repeat 2 97 0 23 68 0 0 chr21 9790634 9790678 -25116892 + AT_rich Low_complexity Low_complexity 1 44 0 246 86 29 0 chr21 9790678 9790713 -25116857 + THE1B LTR MaLR 340 375 0 1810 173 16 0 chr21 9791657 9791964 -25115606 - AluSx SINE Alu 0 312 1 1104 238 64 51 chr21 9792129 9792520 -25115050 + LTR47B LTR ERVL 11 406 -37 26 0 0 0 chr21 9792647 9792673 -25114897 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr21 9792866 9792890 -25114680 + AT_rich Low_complexity Low_complexity 1 24 0 1920 141 3 0 chr21 9792893 9793215 -25114355 + AluSx SINE Alu 1 323 0 970 249 47 30 chr21 9793371 9793800 -25113770 - L1MDb LINE L1 -5079 1330 895 2235 110 48 20 chr21 9793838 9794192 -25113378 - THE1B LTR MaLR 0 364 1 9235 109 36 81 chr21 9794192 9795845 -25111725 - THE1B-int LTR MaLR 0 1580 1 1927 149 19 27 chr21 9795845 9796221 -25111349 - THE1C LTR MaLR 0 375 3 1416 230 3 0 chr21 9796388 9796671 -25110899 + AluJb SINE Alu 1 284 -28 23 33 0 0 chr21 9796672 9796702 -25110868 + AT_rich Low_complexity Low_complexity 1 30 0 1489 227 44 10 chr21 9797253 9797636 -25109934 + MSTD LTR MaLR 1 396 0 605 206 15 0 chr21 9799415 9799546 -25108024 + FLAM_C SINE Alu 1 133 0 21 36 0 0 chr21 9800000 9800028 -25107542 + AT_rich Low_complexity Low_complexity 1 28 0 1072 132 89 0 chr21 9800375 9800565 -25107005 - L1MA2 LINE L1 0 6304 6098 557 108 0 0 chr21 9800566 9800649 -25106921 + L1MA1 LINE L1 5879 5961 -341 469 270 22 65 chr21 9800681 9800866 -25106704 + L1MDb LINE L1 5 181 -6228 218 116 23 0 chr21 9800892 9800935 -25106635 + (CA)n Simple_repeat Simple_repeat 1 44 0 777 184 64 86 chr21 9801254 9801336 -25106234 + L1MDb LINE L1 697 779 -5630 1395 216 70 6 chr21 9801336 9801679 -25105891 + MLT1A1 LTR MaLR 1 365 0 777 184 64 86 chr21 9801679 9801829 -25105741 + L1MDb LINE L1 779 924 -5485 1148 263 49 11 chr21 9801829 9802256 -25105314 - LTR68 LTR ERV1 0 740 233 2045 123 51 21 chr21 9802409 9802743 -25104827 + THE1B LTR MaLR 1 344 -20 4475 84 2 0 chr21 9802749 9803347 -25104223 + THE1B-int LTR MaLR 2 600 -980 1839 129 38 7 chr21 9803380 9803667 -25103903 - AluSx SINE Alu -16 296 1 1932 137 3 38 chr21 9804648 9804963 -25102607 - AluSx SINE Alu -8 304 1 379 271 99 26 chr21 9805057 9805208 -25102362 + MER97c DNA MER1_type? 15 176 -914 773 236 50 0 chr21 9806265 9806464 -25101106 + MER3 DNA MER1_type 1 209 0 1809 165 62 15 chr21 9806688 9807027 -25100543 - MLT1A1 LTR MaLR 0 365 11 288 267 38 19 chr21 9807105 9807210 -25100360 - MLT1I LTR MaLR -203 206 100 306 374 24 24 chr21 9807289 9807495 -25100075 + MIR SINE MIR 57 262 0 1621 150 14 35 chr21 9807775 9808061 -25099509 + AluY SINE Alu 1 280 -31 460 56 28 0 chr21 9808062 9808134 -25099436 + (TC)n Simple_repeat Simple_repeat 1 74 0 1558 184 9 44 chr21 9808195 9808510 -25099060 + AluJo SINE Alu 5 308 -4 270 0 0 0 chr21 9809166 9809196 -25098374 + (CA)n Simple_repeat Simple_repeat 2 31 0 22 73 0 15 chr21 9810554 9810601 -25096969 + AT_rich Low_complexity Low_complexity 1 48 -19 2222 95 0 3 chr21 9810601 9810896 -25096674 - AluSx SINE Alu -18 294 1 22 73 0 15 chr21 9810896 9810916 -25096654 + AT_rich Low_complexity Low_complexity 48 67 0 1467 212 0 3 chr21 9811035 9811327 -25096243 + AluJo SINE Alu 1 291 -21 8818 181 15 15 chr21 9811983 9814073 -25093497 + Tigger1 DNA MER2_type 273 2414 -4 1566 135 135 32 chr21 9814073 9814413 -25093157 + THE1C LTR MaLR 1 375 0 9362 135 31 19 chr21 9814414 9815974 -25091596 + THE1C-int LTR MaLR 2 1580 0 1809 147 57 38 chr21 9815974 9816342 -25091228 + THE1C LTR MaLR 1 375 0 268 314 67 54 chr21 9817128 9817351 -25090219 + L2 LINE L2 2621 2846 -468 22 0 0 0 chr21 9817711 9817733 -25089837 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr21 9818416 9818454 -25089116 + AT_rich Low_complexity Low_complexity 1 38 0 184 250 94 0 chr21 9818555 9818619 -25088951 - MIR SINE MIR -13 249 180 547 322 25 15 chr21 9818624 9818823 -25088747 - MIR SINE MIR -56 206 6 570 330 70 7 chr21 9819275 9819560 -25088010 + L1MC4 LINE L1 6703 7005 -1037 986 311 65 19 chr21 9819962 9820332 -25087238 + L1MB8 LINE L1 18 404 -6455 1866 248 48 16 chr21 9820469 9820954 -25086616 + L1MB8 LINE L1 4872 5340 -1617 1869 201 32 3 chr21 9820954 9821333 -25086237 + MLT1B LTR MaLR 1 390 0 1866 248 48 16 chr21 9821333 9821699 -25085871 + L1MB8 LINE L1 5340 5844 -1113 1356 64 0 0 chr21 9821699 9821872 -25085698 - L1PA4 LINE L1 -7 6148 5976 1666 40 0 0 chr21 9821872 9822071 -25085499 + L1PA4 LINE L1 5749 5947 -208 3833 221 34 10 chr21 9822091 9823201 -25084369 + L1MB8 LINE L1 5844 6982 -7 2081 152 11 24 chr21 9824115 9824484 -25083086 - THE1B LTR MaLR 0 364 1 11039 108 10 1 chr21 9824484 9826049 -25081521 - THE1B-int LTR MaLR 0 1580 1 1650 184 66 20 chr21 9826049 9826397 -25081173 - THE1B LTR MaLR 0 364 1 897 296 50 9 chr21 9826463 9826796 -25080774 + MLT1F1 LTR MaLR 186 564 -3 1234 245 19 7 chr21 9827415 9827836 -25079734 - L1 LINE L1 -2681 3465 3040 4059 250 12 11 chr21 9827945 9828665 -25078905 - L1PA15-16 LINE L1 -3561 3288 2561 1787 191 0 7 chr21 9828665 9828969 -25078601 - AluSx SINE Alu -8 304 3 4059 250 12 11 chr21 9828969 9829591 -25077979 - L1PA15-16 LINE L1 -4288 2561 1941 3204 221 17 6 chr21 9829643 9830366 -25077204 + L1P LINE L1 3463 4193 -1953 400 326 44 0 chr21 9830366 9830501 -25077069 + L1M4 LINE L1 4208 4348 -1798 558 68 14 0 chr21 9832579 9832653 -25074917 + MADE1 DNA Mariner 2 76 -4 21 0 0 0 chr21 9832930 9832951 -25074619 + AT_rich Low_complexity Low_complexity 1 21 0 349 265 106 66 chr21 9833305 9833456 -25074114 - L2 LINE L2 0 3272 3116 1765 107 55 48 chr21 9834068 9834357 -25073213 + AluSx SINE Alu 1 291 -21 1500 169 67 44 chr21 9834441 9834785 -25072785 + L1MB3 LINE L1 5832 6183 0 260 331 49 7 chr21 9835701 9835843 -25071727 + LTR67 LTR ERVL 408 555 -2 231 36 0 0 chr21 9835858 9835886 -25071684 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 243 362 29 19 chr21 9836187 9836292 -25071278 + MER5A DNA MER1_type 1 106 -83 1043 134 16 16 chr21 9837893 9838079 -25069491 - MER46B DNA MER2_type 0 236 51 327 147 59 0 chr21 9838083 9838185 -25069385 + (TA)n Simple_repeat Simple_repeat 1 108 0 2061 113 0 3 chr21 9838189 9838472 -25069098 - AluSx SINE Alu -30 282 1 1138 145 0 6 chr21 9838472 9838651 -25068919 - MER46B DNA MER2_type -180 56 4 227 253 126 21 chr21 9839069 9839164 -25068406 + L1ME LINE L1 5756 5860 -310 1166 217 19 4 chr21 9839303 9839566 -25068004 + LTR48B LTR ERV1 1 267 -377 807 209 64 18 chr21 9839588 9839808 -25067762 + LTR48B LTR ERV1 384 613 -31 762 275 78 73 chr21 9840096 9840795 -25066775 + L2 LINE L2 2565 3313 0 535 223 14 68 chr21 9840900 9841048 -25066522 - MER7C DNA MER2_type 0 602 463 2424 205 13 25 chr21 9841065 9841587 -25065983 - MER7C DNA MER2_type -83 519 4 2178 206 17 7 chr21 9842473 9842895 -25064675 + MSTB LTR MaLR 1 426 0 189 296 37 37 chr21 9845006 9845087 -25062483 - MER5B DNA MER1_type -62 116 36 920 208 10 10 chr21 9845418 9845615 -25061955 - L1MB5 LINE L1 -9 6165 5969 818 272 0 16 chr21 9846479 9846663 -25060907 + Tigger7 DNA MER2_type 3 183 -2304 759 258 70 8 chr21 9846802 9847046 -25060524 - MER46C DNA MER2_type 0 338 80 22 0 0 0 chr21 9849144 9849166 -25058404 + AT_rich Low_complexity Low_complexity 1 22 0 523 238 50 27 chr21 9849620 9849897 -25057673 - LTR37A LTR ERV1 0 426 195 1705 187 0 0 chr21 9850660 9850944 -25056626 - AluJo SINE Alu -28 284 1 2202 204 24 4 chr21 9853124 9853615 -25053955 - L1MB4 LINE L1 0 6180 5680 309 372 7 20 chr21 9853671 9853824 -25053746 - L1M4 LINE L1 -6382 160 10 22 70 0 0 chr21 9854656 9854699 -25052871 + AT_rich Low_complexity Low_complexity 1 43 0 1925 118 32 0 chr21 9859227 9859548 -25048022 - AluSx SINE Alu 0 332 3 378 208 13 0 chr21 9859777 9859854 -25047716 + MER67D LTR ERV1 432 509 -5 303 235 0 74 chr21 9861163 9861244 -25046326 + MIR SINE MIR 28 102 -160 4766 163 0 15 chr21 9861255 9862067 -25045503 + L1MC1 LINE L1 5514 6313 -20 380 296 23 15 chr21 9862086 9862218 -25045352 + MIR SINE MIR 97 229 -33 243 284 15 0 chr21 9862850 9862917 -25044653 - Charlie1 DNA MER1_type -2687 74 7 5488 224 31 1 chr21 9864730 9865888 -25041682 - THE1C-int LTR MaLR -439 1212 20 1926 158 27 29 chr21 9865894 9866268 -25041302 - THE1C LTR MaLR 0 375 3 311 222 42 0 chr21 9867085 9867157 -25040413 + Tigger2 DNA MER2_type 1 75 -2643 2113 188 16 18 chr21 9867154 9867591 -25039979 + Tigger2 DNA MER2_type 2283 2718 0 26 50 0 0 chr21 9867775 9867815 -25039755 + AT_rich Low_complexity Low_complexity 1 40 0 1990 124 7 0 chr21 9867816 9868098 -25039472 - AluSp SINE Alu -29 284 1 7590 176 25 33 chr21 9868103 9870489 -25037081 - L1MA5A LINE L1 0 6297 3942 1880 128 3 28 chr21 9870489 9870778 -25036792 + AluSx SINE Alu 1 282 -30 7590 176 25 33 chr21 9870778 9871232 -25036338 - L1MA5A LINE L1 -2355 3942 3486 21 36 0 0 chr21 9871240 9871268 -25036302 + AT_rich Low_complexity Low_complexity 1 28 0 2123 252 56 7 chr21 9872218 9872789 -25034781 - MER82 DNA MER2_type -54 599 1 1668 175 3 10 chr21 9872860 9873157 -25034413 - AluJb SINE Alu -15 297 3 258 279 15 0 chr21 9874325 9874393 -25033177 + (TATG)n Simple_repeat Simple_repeat 3 71 0 2358 136 3 0 chr21 9874753 9875107 -25032463 + THE1A LTR MaLR 1 355 0 11090 110 4 1 chr21 9875107 9876682 -25030888 + THE1A-int LTR MaLR 1 1580 0 2509 102 3 0 chr21 9876682 9877025 -25030545 + THE1A LTR MaLR 1 344 -11 531 350 129 29 chr21 9877252 9877880 -25029690 + L2 LINE L2 1990 2680 -634 21 57 0 0 chr21 9879022 9879057 -25028513 + AT_rich Low_complexity Low_complexity 1 35 0 1729 221 83 66 chr21 9879446 9879949 -25027621 - MLT2B1 LTR ERVL -6 514 3 274 292 0 0 chr21 9880016 9880081 -25027489 + MIR SINE MIR 11 75 -187 683 266 45 10 chr21 9880480 9880769 -25026801 - Charlie2 DNA MER1_type -69 2793 2495 21 57 0 0 chr21 9880769 9880804 -25026766 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr21 9880960 9880990 -25026580 + AT_rich Low_complexity Low_complexity 1 30 0 2005 176 34 14 chr21 9881041 9881398 -25026172 + THE1B LTR MaLR 1 364 0 10609 111 26 1 chr21 9881398 9882939 -25024631 + THE1B-int LTR MaLR 1 1580 0 1918 174 54 14 chr21 9882939 9883289 -25024281 + THE1B LTR MaLR 1 364 0 2326 75 0 13 chr21 9883731 9884036 -25023534 + AluY SINE Alu 1 301 -10 1266 263 78 16 chr21 9886129 9886502 -25021068 - MSTD LTR MaLR 0 396 1 3442 39 0 0 chr21 9888324 9888735 -25018835 - L1PA5 LINE L1 -432 5722 5312 3429 43 7 14 chr21 9888738 9889177 -25018393 + L1PA5 LINE L1 5714 6149 -5 29 28 0 0 chr21 9889842 9889878 -25017692 + AT_rich Low_complexity Low_complexity 1 36 0 3131 105 13 0 chr21 9890083 9890530 -25017040 - MLT2A2 LTR ERVL 0 453 1 2079 194 28 21 chr21 9891068 9891491 -25016079 + Tigger2a DNA MER2_type 8 433 -1 2981 20 0 0 chr21 9891638 9891984 -25015586 - L1PA2 LINE L1 -2 6153 5808 4379 20 0 0 chr21 9891984 9892490 -25015080 + L1P LINE L1 3935 4440 -1706 265 354 28 50 chr21 9894729 9895275 -25012295 + HAL1 LINE L1 1101 1634 -873 200 384 51 14 chr21 9896091 9896229 -25011341 - MIR SINE MIR -117 145 3 23 78 0 0 chr21 9896935 9896986 -25010584 + AT_rich Low_complexity Low_complexity 1 51 0 2428 180 27 14 chr21 9898313 9898796 -25008774 + L1PA16 LINE L1 5676 6164 -2 2273 123 37 0 chr21 9899684 9900034 -25007536 - THE1B LTR MaLR 0 364 2 7835 130 3 0 chr21 9900035 9901185 -25006385 - THE1B-int LTR MaLR 0 1580 427 1573 259 83 49 chr21 9902126 9902682 -25004888 - MLT1E LTR MaLR -1 592 18 2063 151 0 0 chr21 9904300 9904612 -25002958 + AluSq SINE Alu 1 312 -1 1406 244 32 44 chr21 9905154 9905564 -25002006 - MLT1E2 LTR MaLR 0 626 222 237 209 108 62 chr21 9905574 9905703 -25001867 - MLT1E1 LTR MaLR -380 246 112 257 196 0 22 chr21 9905775 9905821 -25001749 - MLT1E1 LTR MaLR -605 49 5 684 270 78 61 chr21 9906009 9906035 -25001535 + L1MCb LINE L1 1 25 -6020 1608 235 82 9 chr21 9906035 9906499 -25001071 - MLT1D LTR MaLR -3 502 5 684 270 78 61 chr21 9906499 9906765 -25000805 + L1MCb LINE L1 25 298 -5747 596 227 131 23 chr21 9907028 9907255 -25000315 - LOR1a LTR ERV1 -38 459 192 263 197 91 0 chr21 9907252 9907318 -25000252 - LOR1a LTR ERV1 -189 308 237 2064 124 0 0 chr21 9907323 9907614 -24999956 - AluSx SINE Alu -17 295 5 1370 264 48 14 chr21 9907859 9908714 -24998856 + L1MCb LINE L1 653 1540 -4851 25 83 0 0 chr21 9908720 9908780 -24998790 + AT_rich Low_complexity Low_complexity 1 60 0 2794 138 0 56 chr21 9908818 9909319 -24998251 - L1PA15 LINE L1 -3 6813 6341 14652 233 19 13 chr21 9909389 9910089 -24997481 - L1PA15 LINE L1 -484 6332 5638 183 42 0 0 chr21 9910089 9910113 -24997457 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 14652 233 19 13 chr21 9910113 9914347 -24993223 - L1PA15 LINE L1 -1178 5638 1357 183 338 14 0 chr21 9915015 9915089 -24992481 + L2 LINE L2 2244 2318 -996 191 275 72 29 chr21 9916107 9916176 -24991394 - L2 LINE L2 0 3313 3242 181 351 75 0 chr21 9916236 9916330 -24991240 + L2 LINE L2 1247 1347 -1967 1907 169 36 28 chr21 9917308 9917669 -24989901 - THE1B LTR MaLR 0 364 1 445 268 20 39 chr21 9917958 9918111 -24989459 - MLT1G LTR MaLR 0 590 441 266 176 0 0 chr21 9918168 9918219 -24989351 - L1MA9 LINE L1 -38 6274 6224 25 0 0 0 chr21 9918654 9918679 -24988891 + AT_rich Low_complexity Low_complexity 1 25 0 1200 291 127 57 chr21 9919420 9920333 -24987237 - L2 LINE L2 -1 3312 2301 26 50 0 0 chr21 9921159 9921199 -24986371 + AT_rich Low_complexity Low_complexity 1 40 0 919 158 0 19 chr21 9923728 9923886 -24983684 - AluSg/x SINE Alu -17 292 138 1071 308 72 31 chr21 9924586 9925140 -24982430 + MLT1E LTR MaLR 6 593 0 21 0 0 0 chr21 9925738 9925759 -24981811 + AT_rich Low_complexity Low_complexity 1 21 0 1781 186 66 24 chr21 9926928 9927305 -24980265 + MER57A LTR ERV1 11 403 0 2183 94 0 19 chr21 9927431 9927740 -24979830 - AluSc SINE Alu -6 303 1 2598 51 0 0 chr21 9928021 9928332 -24979238 + AluY SINE Alu 1 311 0 312 325 31 6 chr21 9928543 9928706 -24978864 - MER110A LTR ERV1 -13 455 289 2207 122 3 0 chr21 9929344 9929655 -24977915 - AluSp SINE Alu -1 312 1 187 229 62 0 chr21 9929905 9929953 -24977617 - L2 LINE L2 0 3313 3263 556 70 105 0 chr21 9931390 9931476 -24976094 - L1PA8 LINE L1 -14 6158 6064 1771 196 54 48 chr21 9931938 9932401 -24975169 + MER31B LTR ERV1 1 466 0 192 77 0 0 chr21 9932541 9932567 -24975003 + (T)n Simple_repeat Simple_repeat 1 26 0 237 289 70 55 chr21 9932606 9932734 -24974836 + MIR SINE MIR 35 164 -98 247 212 28 56 chr21 9933648 9933827 -24973743 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 333 179 9 36 chr21 9933778 9933890 -24973680 + (TA)n Simple_repeat Simple_repeat 1 109 0 2346 90 0 3 chr21 9936054 9936364 -24971206 - AluSc SINE Alu 0 309 1 363 82 0 0 chr21 9937021 9937070 -24970500 - Alu SINE Alu -4 296 248 354 289 75 53 chr21 9937230 9937417 -24970153 + L1MC5 LINE L1 7253 7443 -518 4169 48 8 0 chr21 9937428 9937947 -24969623 - L1PA5 LINE L1 -1551 4595 4073 7391 37 1 1 chr21 9937941 9939536 -24968034 + L1PA5 LINE L1 4562 6157 0 5529 43 0 1 chr21 9939537 9940249 -24967321 - L1P LINE L1 -2733 3413 2703 4848 41 3 0 chr21 9940249 9940853 -24966717 + L1PA4 LINE L1 5565 6189 0 738 248 63 71 chr21 9941035 9941386 -24966184 + L1MC5 LINE L1 7601 7948 -13 596 231 52 58 chr21 9941539 9941634 -24965936 + MER33 DNA MER1_type 19 113 -2472 788 147 45 6 chr21 9941634 9941811 -24965759 - L1MA7 LINE L1 -2 6289 6106 596 231 52 58 chr21 9941811 9942023 -24965547 + MER33 DNA MER1_type 113 324 0 307 262 134 29 chr21 9945499 9945671 -24961899 - MLT1G1 LTR MaLR -5 537 348 402 299 42 30 chr21 9945913 9946080 -24961490 - MLT1G1 LTR MaLR -416 179 11 258 331 69 54 chr21 9946131 9946481 -24961089 + L2 LINE L2 1353 1707 -1607 255 357 8 24 chr21 9946637 9946763 -24960807 + L2 LINE L2 1881 2004 -1310 21 0 0 0 chr21 9947075 9947096 -24960474 + AT_rich Low_complexity Low_complexity 1 21 0 293 135 11 101 chr21 9948357 9948535 -24959035 + (TA)n Simple_repeat Simple_repeat 1 162 0 396 171 59 29 chr21 9948447 9948617 -24958953 + (CTATA)n Simple_repeat Simple_repeat 2 176 0 325 135 21 88 chr21 9948584 9948776 -24958794 + (TA)n Simple_repeat Simple_repeat 2 180 0 350 142 136 25 chr21 9948905 9949067 -24958503 + (CTATA)n Simple_repeat Simple_repeat 1 180 0 228 145 50 44 chr21 9949385 9949544 -24958026 + (CTATA)n Simple_repeat Simple_repeat 2 161 0 218 149 75 30 chr21 9949544 9949611 -24957959 + (TATAG)n Simple_repeat Simple_repeat 3 72 0 246 231 0 0 chr21 9949644 9949709 -24957861 + (TA)n Simple_repeat Simple_repeat 2 66 0 1176 179 64 44 chr21 9950579 9950875 -24956695 + MLT1B LTR MaLR 4 305 -85 621 72 0 0 chr21 9951386 9951469 -24956101 + (TTCC)n Simple_repeat Simple_repeat 2 84 0 1401 215 22 0 chr21 9951469 9951743 -24955827 - AluJb SINE Alu -32 280 1 289 265 53 65 chr21 9953256 9953501 -24954069 + L1ME LINE L1 5588 5829 -292 2150 70 0 18 chr21 9953541 9953880 -24953690 - AluY SINE Alu 0 334 1 21 0 0 0 chr21 9953933 9953954 -24953616 + AT_rich Low_complexity Low_complexity 1 21 0 1010 275 95 67 chr21 9953972 9954423 -24953147 + MLT2B1 LTR ERVL 1 464 0 21 57 0 0 chr21 9955220 9955255 -24952315 + AT_rich Low_complexity Low_complexity 1 35 0 189 171 0 0 chr21 9955783 9955818 -24951752 + CT-rich Low_complexity Low_complexity 2 36 0 2229 104 0 3 chr21 9956496 9956803 -24950767 - AluSc SINE Alu -1 308 3 914 176 39 0 chr21 9957042 9957195 -24950375 + Tigger7 DNA MER2_type 1 159 -2328 1580 142 0 35 chr21 9957210 9957498 -24950072 + Tigger7 DNA MER2_type 2210 2487 0 24 53 0 0 chr21 9957961 9957999 -24949571 + AT_rich Low_complexity Low_complexity 1 38 0 327 178 14 14 chr21 9958404 9958477 -24949093 - L1PA15 LINE L1 -20 6145 6073 237 252 57 82 chr21 9959571 9959730 -24947840 + LTR33A LTR ERVL 362 516 -7 235 269 85 23 chr21 9959752 9959882 -24947688 + LTR16C LTR ERVL 352 489 -2 180 0 0 0 chr21 9960135 9960155 -24947415 + (TA)n Simple_repeat Simple_repeat 1 20 0 2067 73 33 4 chr21 9960159 9960475 -24947095 - AluY SINE Alu 0 324 1 25 31 0 0 chr21 9960699 9960731 -24946839 + AT_rich Low_complexity Low_complexity 1 32 0 450 308 111 32 chr21 9962693 9963130 -24944440 - L2 LINE L2 -137 3176 2717 192 152 0 0 chr21 9963579 9963612 -24943958 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 555 269 69 49 chr21 9963618 9963923 -24943647 - MER46C DNA MER2_type -18 320 10 260 234 16 0 chr21 9964020 9964084 -24943486 + LTR53 LTR ERVL 1 65 -454 570 202 9 0 chr21 9965133 9965242 -24942328 + L1MA6 LINE L1 5688 5797 -494 2303 149 64 2 chr21 9965245 9965669 -24941901 + L1MA6 LINE L1 5844 6293 -7 710 225 114 92 chr21 9968038 9968240 -24939330 - MLT1B LTR MaLR 0 390 194 249 57 0 0 chr21 9968240 9968275 -24939295 + (CAAA)n Simple_repeat Simple_repeat 4 38 0 710 225 114 92 chr21 9968275 9968335 -24939235 - MLT1B LTR MaLR -196 194 137 2208 137 20 6 chr21 9968335 9968692 -24938878 - THE1B LTR MaLR 0 364 3 710 225 114 92 chr21 9968692 9968788 -24938782 - MLT1B LTR MaLR -253 137 23 1044 208 10 0 chr21 9969203 9969400 -24938170 - MLT1B LTR MaLR 0 390 192 4049 177 22 15 chr21 9969427 9970228 -24937342 + L1MC1 LINE L1 5527 6333 0 365 289 111 0 chr21 9971485 9971620 -24935950 - L2 LINE L2 -998 2316 2167 252 0 0 0 chr21 9971787 9971815 -24935755 + (T)n Simple_repeat Simple_repeat 1 28 0 874 331 20 3 chr21 9971826 9972170 -24935400 + LTR16A LTR ERVL 96 445 -5 450 343 52 16 chr21 9972161 9972409 -24935161 - MLT1J LTR MaLR -184 327 71 2340 59 0 56 chr21 9973576 9973900 -24933670 - AluY SINE Alu -5 306 1 1368 219 81 55 chr21 9974375 9974867 -24932703 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr21 9975456 9975478 -24932092 + AT_rich Low_complexity Low_complexity 1 22 0 2391 111 14 3 chr21 9975976 9976326 -24931244 + THE1A LTR MaLR 1 354 -1 10524 98 20 39 chr21 9976327 9977937 -24929633 + THE1A-int LTR MaLR 1 1580 0 2563 75 8 30 chr21 9977939 9978240 -24929330 + THE1A LTR MaLR 3 297 -58 1670 109 26 89 chr21 9978240 9978376 -24929194 + AluSx SINE Alu 1 144 -172 2105 92 4 4 chr21 9978376 9978688 -24928882 + AluSg SINE Alu 1 312 0 1670 109 26 89 chr21 9978688 9978885 -24928685 + AluSx SINE Alu 144 316 0 2563 75 8 30 chr21 9978885 9978943 -24928627 + THE1A LTR MaLR 297 355 0 22 70 0 0 chr21 9979158 9979201 -24928369 + AT_rich Low_complexity Low_complexity 1 43 0 2226 95 0 7 chr21 9979373 9979678 -24927892 - AluY SINE Alu -8 303 1 334 259 9 37 chr21 9980638 9980746 -24926824 + CT-rich Low_complexity Low_complexity 4 108 0 22 56 0 0 chr21 9980749 9980785 -24926785 + AT_rich Low_complexity Low_complexity 1 36 0 271 265 0 15 chr21 9982340 9982408 -24925162 + (TAG)n Simple_repeat Simple_repeat 1 67 0 512 291 63 0 chr21 9982458 9982633 -24924937 - MIR SINE MIR -21 241 56 673 259 27 5 chr21 9982732 9982917 -24924653 - MER5A DNA MER1_type 0 189 1 329 247 62 10 chr21 9983781 9983878 -24923692 + MER5B DNA MER1_type 1 102 -76 21 36 0 0 chr21 9984551 9984579 -24922991 + AT_rich Low_complexity Low_complexity 1 28 0 766 209 40 22 chr21 9984850 9985075 -24922495 + Charlie5 DNA MER1_type 2356 2584 -28 1182 239 0 12 chr21 9986069 9986324 -24921246 - MLT1D LTR MaLR 0 505 254 261 128 0 0 chr21 9986387 9986434 -24921136 + (TG)n Simple_repeat Simple_repeat 1 47 0 279 252 43 70 chr21 9986447 9986562 -24921008 - MLT1D LTR MaLR -367 138 27 1727 139 15 7 chr21 9986849 9987162 -24920408 - AluY SINE Alu 0 321 7 1721 229 25 10 chr21 9987417 9987823 -24919747 - MLT2C2 LTR ERVL -52 412 1 481 216 36 149 chr21 9988512 9988734 -24918836 - MLT1A1 LTR MaLR -2 363 167 201 74 0 0 chr21 9988796 9988823 -24918747 + (A)n Simple_repeat Simple_repeat 1 27 0 850 190 32 6 chr21 9988830 9988988 -24918582 - MLT1A1 LTR MaLR -203 162 1 1120 287 73 61 chr21 9989382 9989877 -24917693 - MLT1E LTR MaLR 0 593 93 447 225 5 118 chr21 9989856 9990043 -24917527 - MLT1E LTR MaLR -427 166 1 625 297 76 60 chr21 9992959 9993339 -24914231 + MLT1G1 LTR MaLR 200 585 -10 22 0 0 0 chr21 9993378 9993400 -24914170 + AT_rich Low_complexity Low_complexity 1 22 0 396 0 0 0 chr21 9993616 9993660 -24913910 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 216 86 0 0 chr21 9993818 9993853 -24913717 + (CCCTAA)n Simple_repeat Simple_repeat 5 39 0 21 57 0 0 chr21 9995241 9995276 -24912294 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr21 9995890 9995918 -24911652 + AT_rich Low_complexity Low_complexity 1 28 0 1258 41 35 12 chr21 9996503 9996673 -24910897 + L1PA4 LINE L1 5982 6155 0 543 305 76 64 chr21 9998739 9999159 -24908411 - MLT1J2 LTR MaLR -21 429 5 1245 253 50 71 chr21 9999725 10000049 -24907521 + MER67D LTR ERV1 1 311 -203 1572 174 35 0 chr21 10000049 10000336 -24907234 + L1PA16 LINE L1 5861 6157 -9 1245 253 50 71 chr21 10000336 10000532 -24907038 + MER67D LTR ERV1 311 510 -4 21 36 0 0 chr21 10002363 10002391 -24905179 + AT_rich Low_complexity Low_complexity 1 28 0 1342 271 78 0 chr21 10003200 10003595 -24903975 - MER97c DNA MER1_type? -635 455 30 1303 42 42 0 chr21 10004286 10004454 -24903116 - L1PA4 LINE L1 0 6155 5981 1574 21 0 0 chr21 10004454 10004640 -24902930 + L1PA4 LINE L1 5794 5979 -176 23 68 0 0 chr21 10005102 10005146 -24902424 + AT_rich Low_complexity Low_complexity 1 44 0 195 129 0 0 chr21 10005238 10005269 -24902301 + (GAAA)n Simple_repeat Simple_repeat 3 33 0 510 91 13 0 chr21 10005753 10005830 -24901740 - MADE1 DNA Mariner -2 78 1 414 0 0 0 chr21 10005948 10005994 -24901576 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 226 140 40 0 chr21 10006004 10006054 -24901516 - L1MC4 LINE L1 -1339 6703 6652 198 191 0 0 chr21 10006393 10006435 -24901135 + (TA)n Simple_repeat Simple_repeat 2 43 0 3279 158 13 48 chr21 10007206 10007729 -24899841 - L1MA2 LINE L1 -9 7714 7218 1838 149 7 7 chr21 10007729 10008037 -24899533 - AluSx SINE Alu -1 311 4 3279 158 13 48 chr21 10008037 10008186 -24899384 - L1MA2 LINE L1 -505 7218 7065 1714 137 14 31 chr21 10008204 10008497 -24899073 - THE1B LTR MaLR -76 288 1 10844 101 31 1 chr21 10008497 10010032 -24897538 - THE1B-int LTR MaLR 0 1580 1 2389 94 33 25 chr21 10010032 10010393 -24897177 - THE1B LTR MaLR 0 364 1 13531 183 40 17 chr21 10010393 10011207 -24896363 - L1MA2 LINE L1 -652 7069 6275 381 22 0 0 chr21 10011207 10011253 -24896317 + (TG)n Simple_repeat Simple_repeat 2 47 0 13531 183 40 17 chr21 10011253 10012532 -24895038 - L1MA2 LINE L1 -1446 6275 5027 1960 144 3 10 chr21 10012532 10012837 -24894733 - AluSx SINE Alu -9 303 1 13531 183 40 17 chr21 10012837 10014059 -24893511 - L1MA2 LINE L1 -2694 5027 3675 2031 206 21 11 chr21 10014061 10014494 -24893076 - L1MA2 LINE L1 -5800 1765 1329 2581 210 31 24 chr21 10014461 10015042 -24892528 - L1MA2 LINE L1 -6959 606 22 24 0 0 0 chr21 10015628 10015652 -24891918 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr21 10016039 10016070 -24891500 + AT_rich Low_complexity Low_complexity 1 31 0 255 303 147 9 chr21 10017121 10017230 -24890340 + L2 LINE L2 3187 3310 -3 1818 182 0 3 chr21 10017718 10018031 -24889539 - AluSx SINE Alu 0 312 1 308 254 0 0 chr21 10018129 10018192 -24889378 - MIR SINE MIR -116 146 84 24 0 0 0 chr21 10018571 10018595 -24888975 + AT_rich Low_complexity Low_complexity 1 24 0 287 406 0 0 chr21 10020373 10020506 -24887064 - MER5A DNA MER1_type -56 133 1 1812 91 0 0 chr21 10021000 10021231 -24886339 + AluSc SINE Alu 3 233 -76 2239 112 0 0 chr21 10021242 10021538 -24886032 + AluSc SINE Alu 3 298 -11 2280 68 3 0 chr21 10021538 10021831 -24885739 + AluY SINE Alu 1 294 -17 189 0 0 0 chr21 10022115 10022136 -24885434 + (T)n Simple_repeat Simple_repeat 1 21 0 217 62 0 83 chr21 10024161 10024209 -24883361 + (CTAAT)n Simple_repeat Simple_repeat 1 44 0 1362 148 4 8 chr21 10024366 10024616 -24882954 + L1MA5A LINE L1 6045 6293 -4 22 0 0 0 chr21 10024639 10024661 -24882909 + AT_rich Low_complexity Low_complexity 1 22 0 2235 112 3 0 chr21 10024780 10025092 -24882478 - AluSq SINE Alu 0 313 1 568 275 31 13 chr21 10025750 10026020 -24881550 + MLT2F LTR ERVL 10 328 -335 44 56 0 0 chr21 10027222 10027294 -24880276 + AT_rich Low_complexity Low_complexity 1 72 0 1967 82 15 4 chr21 10027654 10027921 -24879649 + AluY SINE Alu 36 305 -6 512 218 98 8 chr21 10028122 10028255 -24879315 + MLT1C LTR MaLR 6 150 -317 207 77 51 26 chr21 10028275 10028314 -24879256 + (AGTAG)n Simple_repeat Simple_repeat 4 43 0 328 298 0 0 chr21 10028532 10028636 -24878934 + MLT1D LTR MaLR 402 505 0 986 263 62 66 chr21 10028650 10029213 -24878357 + L1MC4a LINE L1 6058 6618 -1190 31 82 0 0 chr21 10029688 10029761 -24877809 + AT_rich Low_complexity Low_complexity 1 73 0 30 27 0 0 chr21 10030359 10030396 -24877174 + AT_rich Low_complexity Low_complexity 1 37 0 1627 242 60 72 chr21 10030821 10031541 -24876029 + L1ME1 LINE L1 5358 6068 -98 189 74 0 0 chr21 10033144 10033171 -24874399 + (TG)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr21 10033494 10033516 -24874054 + AT_rich Low_complexity Low_complexity 1 22 0 1761 133 4 0 chr21 10033801 10034049 -24873521 + AluSx SINE Alu 1 249 -63 2166 129 131 8 chr21 10034239 10034620 -24872950 + MSTA LTR MaLR 1 428 0 1420 213 3 36 chr21 10035026 10035327 -24872243 + AluJo SINE Alu 9 299 -13 1902 186 43 24 chr21 10036184 10036445 -24871125 + MLT2A2 LTR ERVL 1 255 -299 1840 161 53 28 chr21 10036445 10036800 -24870770 + THE1B LTR MaLR 1 364 0 1902 186 43 24 chr21 10036800 10037088 -24870482 + MLT2A2 LTR ERVL 255 554 0 2432 52 0 10 chr21 10039912 10040219 -24867351 + AluY SINE Alu 3 306 -5 26 64 0 0 chr21 10040629 10040676 -24866894 + AT_rich Low_complexity Low_complexity 1 47 0 24 67 0 0 chr21 10040936 10040981 -24866589 + AT_rich Low_complexity Low_complexity 1 45 0 25 51 0 0 chr21 10041710 10041749 -24865821 + AT_rich Low_complexity Low_complexity 1 39 0 705 285 136 23 chr21 10041865 10042499 -24865071 - Charlie7 DNA MER1_type -1883 729 2 339 316 70 0 chr21 10043151 10043246 -24864324 - L2 LINE L2 -689 2625 2523 405 342 60 39 chr21 10043246 10043480 -24864090 + MIR SINE MIR 3 241 -21 702 311 96 29 chr21 10043498 10044212 -24863358 - L2 LINE L2 -821 2493 1717 1480 332 57 18 chr21 10044473 10045142 -24862428 - L2 LINE L2 -1970 1344 650 22 35 0 0 chr21 10045637 10045666 -24861904 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr21 10045898 10045926 -24861644 + AT_rich Low_complexity Low_complexity 1 28 0 431 311 30 6 chr21 10046151 10046318 -24861252 + MIR SINE MIR 92 262 0 617 292 120 22 chr21 10046826 10047100 -24860470 - LTR16C LTR ERVL -9 482 182 261 0 0 0 chr21 10047219 10047248 -24860322 + (TG)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr21 10048741 10048772 -24858798 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr21 10048953 10048984 -24858586 + AT_rich Low_complexity Low_complexity 1 31 0 400 162 27 0 chr21 10049299 10049373 -24858197 - AluJ/FRAM SINE Alu -4 298 223 1851 205 99 83 chr21 10050556 10051194 -24856376 - L1MC3 LINE L1 -8 7777 7130 3667 167 34 3 chr21 10051927 10052656 -24854914 + L1MA8 LINE L1 5537 6288 -3 333 296 93 6 chr21 10052883 10053055 -24854515 - MLT1L LTR MaLR -17 598 412 5128 160 26 1 chr21 10053543 10054726 -24852844 - L1PA16 LINE L1 -77 6089 4885 911 152 7 0 chr21 10054726 10054871 -24852699 + Tigger3(Golem) DNA MER2_type 2845 2990 -39 23 0 0 0 chr21 10054895 10054918 -24852652 + AT_rich Low_complexity Low_complexity 1 23 0 549 311 27 31 chr21 10055166 10055388 -24852182 - LTR33 LTR ERVL -298 223 3 2151 114 0 0 chr21 10056330 10056627 -24850943 - AluSg SINE Alu -13 297 1 21 36 0 0 chr21 10057161 10057189 -24850381 + AT_rich Low_complexity Low_complexity 1 28 0 1126 259 4 8 chr21 10057324 10057575 -24849995 + MLT1A1 LTR MaLR 114 363 -2 22 0 0 0 chr21 10058360 10058382 -24849188 + AT_rich Low_complexity Low_complexity 1 22 0 410 199 157 99 chr21 10058979 10059048 -24848522 - LTR48 LTR ERV1 -7 780 716 3364 158 5 34 chr21 10059048 10059675 -24847895 - MER4B LTR ERV1 -1 609 1 410 199 157 99 chr21 10059675 10059796 -24847774 - LTR48 LTR ERV1 -71 716 579 859 196 127 59 chr21 10059817 10060198 -24847372 - LTR48 LTR ERV1 -337 450 1 2645 191 61 2 chr21 10060212 10060756 -24846814 + LTR59 LTR ERV1 1 576 -21 409 308 112 6 chr21 10061792 10061961 -24845609 + LTR1 LTR ERV1 36 222 -563 1091 226 109 66 chr21 10062028 10062422 -24845148 + LTR1B LTR ERV1 311 721 -105 301 176 0 0 chr21 10062644 10062695 -24844875 - L1MC4 LINE L1 -1339 6703 6653 1426 163 45 120 chr21 10062697 10063072 -24844498 + MER7A DNA MER2_type 1 345 -1 294 29 0 0 chr21 10063072 10063107 -24844463 + (CA)n Simple_repeat Simple_repeat 2 36 0 947 264 108 60 chr21 10063142 10063577 -24843993 - MLT2B1 LTR ERVL -64 456 1 198 103 0 0 chr21 10064189 10064218 -24843352 + (TC)n Simple_repeat Simple_repeat 2 30 0 24 53 0 0 chr21 10064959 10064997 -24842573 + AT_rich Low_complexity Low_complexity 1 38 0 1140 183 10 0 chr21 10064997 10065205 -24842365 - MER2 DNA MER2_type -134 210 1 1613 222 45 82 chr21 10065348 10066052 -24841518 - L1MEc LINE L1 -1454 4761 4084 1602 196 11 21 chr21 10066202 10066555 -24841015 - MER21B LTR ERV1 -459 404 8 565 301 90 13 chr21 10066566 10067034 -24840536 - L1MEc LINE L1 -2275 3940 3420 1801 180 38 24 chr21 10067052 10067425 -24840145 - MER65A LTR ERV1 -28 417 40 986 127 6 0 chr21 10067475 10067632 -24839938 - L1PB1 LINE L1 0 6151 5994 750 315 45 10 chr21 10067650 10067964 -24839606 - L1MEc LINE L1 -2787 3428 3104 600 244 90 15 chr21 10067965 10068231 -24839339 - L1MEc LINE L1 -3129 3086 2801 1468 253 73 32 chr21 10068492 10069025 -24838545 - L1MEc LINE L1 -3876 2520 1966 4312 24 2 0 chr21 10069069 10069575 -24837995 - L1PA3 LINE L1 -1141 5005 4499 7551 31 0 1 chr21 10069575 10070747 -24836823 + L1PA3 LINE L1 4985 6155 0 2318 171 21 23 chr21 10070978 10071412 -24836158 - Tigger2a DNA MER2_type 0 434 2 257 151 19 0 chr21 10071418 10071471 -24836099 + (TG)n Simple_repeat Simple_repeat 1 54 0 688 262 103 28 chr21 10071487 10071777 -24835793 - L1MEc LINE L1 -4470 1926 1615 263 288 44 12 chr21 10072192 10072352 -24835218 - L1MEc LINE L1 -5011 1194 1030 229 268 0 0 chr21 10072357 10072413 -24835157 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 2265 104 0 3 chr21 10072412 10072743 -24834827 - AluSc SINE Alu 0 330 1 2332 168 36 19 chr21 10073219 10073695 -24833875 - L1MA4 LINE L1 -114 6186 5703 21 0 0 0 chr21 10073922 10073943 -24833627 + AT_rich Low_complexity Low_complexity 1 21 0 1522 201 38 0 chr21 10074069 10074382 -24833188 + L1MC3 LINE L1 7198 7522 -263 23 33 0 0 chr21 10074486 10074516 -24833054 + AT_rich Low_complexity Low_complexity 1 30 0 1770 159 3 7 chr21 10074595 10074884 -24832686 - AluSx SINE Alu -24 288 1 3532 146 57 33 chr21 10076143 10076994 -24830576 + LTR12 LTR ERV1 59 670 -1 1109 194 32 14 chr21 10078642 10078859 -24828711 - AluJo SINE Alu -91 221 1 1571 190 14 11 chr21 10078859 10079212 -24828358 - L1MA4 LINE L1 -815 5331 4978 328 274 68 27 chr21 10079222 10079368 -24828202 - L1M2a LINE L1 -5429 1739 1588 414 85 0 0 chr21 10080185 10080244 -24827326 + (TG)n Simple_repeat Simple_repeat 2 60 0 304 335 87 5 chr21 10080450 10080635 -24826935 - MIR SINE MIR -47 215 16 190 280 32 65 chr21 10083633 10083726 -24823844 - MIR SINE MIR -46 216 127 344 279 29 10 chr21 10083783 10083887 -24823683 + MER5A DNA MER1_type 7 112 -77 1924 247 29 11 chr21 10084288 10084737 -24822833 - MER70B LTR ERVL -121 457 1 204 40 0 0 chr21 10084746 10084771 -24822799 + (CA)n Simple_repeat Simple_repeat 2 26 0 2081 104 0 0 chr21 10085035 10085340 -24822230 + AluSg1 SINE Alu 2 306 0 2210 108 0 0 chr21 10085899 10086204 -24821366 + AluSg SINE Alu 1 305 -5 3105 183 34 9 chr21 10086834 10087489 -24820081 - L1PA13 LINE L1 -756 5390 4720 4680 130 39 0 chr21 10087498 10088246 -24819324 + L1PA13 LINE L1 5385 6161 -2 2061 95 23 0 chr21 10088276 10088581 -24818989 + L1PA13 LINE L1 5845 6156 -7 837 120 8 41 chr21 10090189 10090436 -24817134 + (GAAA)n Simple_repeat Simple_repeat 1 238 0 23 0 0 0 chr21 10091391 10091414 -24816156 + AT_rich Low_complexity Low_complexity 1 23 0 1333 301 64 36 chr21 10093138 10093839 -24813731 - L2 LINE L2 -338 2976 2256